Sequence Modifications Mass Mass Fractional Part Protein Groups Proteins Gene Names Protein Names Unique (Groups) Unique (Proteins) Acetyl (Protein N-term) Carbamidomethyl (C) Oxidation (M) Missed cleavages Identification type P Identification type S Fraction Average Fraction Std. Dev. Fraction 1 Fraction 2 Fraction 3 Fraction 4 Fraction 5 Fraction 6 Fraction 7 Fraction 8 Experiment P Experiment S Retention time Calibrated retention time Charges PEP MS/MS scan number Raw file Score Delta score Reverse Potential contaminant Reporter intensity corrected 1 Reporter intensity corrected 2 Reporter intensity corrected 3 Reporter intensity corrected 4 Reporter intensity corrected 5 Reporter intensity corrected 6 Reporter intensity corrected 7 Reporter intensity corrected 8 Reporter intensity corrected 9 Reporter intensity corrected 10 Reporter intensity corrected 11 Reporter intensity 1 Reporter intensity 2 Reporter intensity 3 Reporter intensity 4 Reporter intensity 5 Reporter intensity 6 Reporter intensity 7 Reporter intensity 8 Reporter intensity 9 Reporter intensity 10 Reporter intensity 11 Reporter intensity count 1 Reporter intensity count 2 Reporter intensity count 3 Reporter intensity count 4 Reporter intensity count 5 Reporter intensity count 6 Reporter intensity count 7 Reporter intensity count 8 Reporter intensity count 9 Reporter intensity count 10 Reporter intensity count 11 Reporter intensity corrected 1 P Reporter intensity corrected 2 P Reporter intensity corrected 3 P Reporter intensity corrected 4 P Reporter intensity corrected 5 P Reporter intensity corrected 6 P Reporter intensity corrected 7 P Reporter intensity corrected 8 P Reporter intensity corrected 9 P Reporter intensity corrected 10 P Reporter intensity corrected 11 P Reporter intensity 1 P Reporter intensity 2 P Reporter intensity 3 P Reporter intensity 4 P Reporter intensity 5 P Reporter intensity 6 P Reporter intensity 7 P Reporter intensity 8 P Reporter intensity 9 P Reporter intensity 10 P Reporter intensity 11 P Reporter intensity count 1 P Reporter intensity count 2 P Reporter intensity count 3 P Reporter intensity count 4 P Reporter intensity count 5 P Reporter intensity count 6 P Reporter intensity count 7 P Reporter intensity count 8 P Reporter intensity count 9 P Reporter intensity count 10 P Reporter intensity count 11 P Reporter intensity corrected 1 S Reporter intensity corrected 2 S Reporter intensity corrected 3 S Reporter intensity corrected 4 S Reporter intensity corrected 5 S Reporter intensity corrected 6 S Reporter intensity corrected 7 S Reporter intensity corrected 8 S Reporter intensity corrected 9 S Reporter intensity corrected 10 S Reporter intensity corrected 11 S Reporter intensity 1 S Reporter intensity 2 S Reporter intensity 3 S Reporter intensity 4 S Reporter intensity 5 S Reporter intensity 6 S Reporter intensity 7 S Reporter intensity 8 S Reporter intensity 9 S Reporter intensity 10 S Reporter intensity 11 S Reporter intensity count 1 S Reporter intensity count 2 S Reporter intensity count 3 S Reporter intensity count 4 S Reporter intensity count 5 S Reporter intensity count 6 S Reporter intensity count 7 S Reporter intensity count 8 S Reporter intensity count 9 S Reporter intensity count 10 S Reporter intensity count 11 S Intensity Intensity P Intensity S id Protein group IDs Peptide ID Evidence IDs MS/MS IDs Best MS/MS Carbamidomethyl (C) site IDs Oxidation (M) site IDs MS/MS Count Taxonomy IDs AAAAAAAAAAGAAGGR Acetyl (Protein N-term) 1239.632 0.63199703 2102 Q86U42;Q86U42-2 PABPN1 Polyadenylate-binding protein 2 yes no 1 0 0 0 By MS/MS By MS/MS 4.5 1.12 2 2 2 2 4 4 53.615 53.645 2 1.4358E-52 15040 20211116_3444_TMUAki_TMT10x_S_F5 157.75 136.2 23206000 38006000 487580 39751000 29331000 35535000 24719000 31908000 28837000 28300000 32095000 21611000 35470000 2442100 40366000 28036000 36379000 25442000 32517000 29272000 27788000 30860000 9 9 8 9 9 9 9 9 9 9 9 10727000 16675000 134250 17327000 16217000 23678000 12657000 13122000 12795000 12878000 15081000 9989000 15562000 1091400 17726000 15468000 23493000 13029000 13867000 13092000 12587000 14478000 4 4 4 4 4 4 4 4 4 4 4 12479000 21330000 353330 22424000 13114000 11856000 12062000 18786000 16042000 15423000 17014000 11622000 19908000 1350800 22641000 12568000 12886000 12413000 18650000 16180000 15201000 16382000 5 5 4 5 5 5 5 5 5 5 5 9996700000 4468900000 5527800000 0 2102 0 0;1;2;3;4;5;6;7 0;1;2;3;4;5;6;7;8 7 9 AAAAAAAAAPAAAATAPTTAATTAATAAQ Unmodified 2367.203 0.2030165 962 P37108 SRP14 Signal recognition particle 14 kDa protein yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.756 2 3 2 4 3 57.362 57.684 2;3 9.8381E-25 18978 20211116_3446_TMUAki_TMT10x_S_F7 143.86 130.66 19849000 32157000 702660 36308000 30126000 49180000 25851000 36187000 38099000 33524000 31021000 18486000 30022000 1974200 36940000 28816000 49015000 26825000 37368000 37972000 32851000 30144000 12 12 4 12 12 12 12 12 12 12 12 15914000 24620000 584660 28659000 25262000 44369000 21235000 29357000 31450000 27228000 24230000 14822000 22989000 1633000 29187000 24154000 43894000 22067000 30542000 31292000 26680000 23597000 7 7 3 7 7 7 7 7 7 7 7 3935200 7536900 118000 7648800 4864000 4810800 4615600 6829300 6648900 6296400 6791100 3664600 7033200 341190 7752700 4662000 5121300 4757700 6825700 6680200 6171300 6546700 5 5 1 5 5 5 5 5 5 5 5 16851000000 12831000000 4019800000 1 962 1 8;9;10;11;12;13;14 9;10;11;12;13;14;15;16 14 8 AAAAAAAAAVSR Unmodified 999.54614 0.54614213 2508 Q96JP5;Q96JP5-2 ZFP91 E3 ubiquitin-protein ligase ZFP91 yes no 0 0 0 0 By MS/MS 1 0 1 1 35.768 35.734 2 0.0010949 10231 20211116_3439_TMUAki_TMT10x_S_F1 81.525 57.37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2508 2 15 17 17 1 AAAAAAAGDSDSWDADAFSVEDPVRK Acetyl (Protein N-term) 2634.1834 0.18340327 360 O75822;O75822-2;O75822-3 EIF3J Eukaryotic translation initiation factor 3 subunit J yes no 1 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 73.036 72.928 3 1.6614E-29 25334 20211116_3439_TMUAki_TMT10x_S_F1 116.74 113.21 9728900 16716000 141190 15486000 10879000 17717000 13121000 10329000 9514200 10783000 12394000 9059600 15594000 954280 15918000 10496000 17745000 13080000 10888000 9939100 10512000 11867000 6 6 6 6 6 6 6 6 6 6 6 7051200 12011000 122390 11056000 7716100 14784000 9927900 7538300 6985400 7888000 9024000 6566300 11204000 707970 11402000 7461600 14668000 9863600 8040500 7307500 7689400 8642000 4 4 4 4 4 4 4 4 4 4 4 2677700 4705800 18803 4429900 3162800 2932900 3193300 2790900 2528900 2894500 3370000 2493300 4389900 246310 4516300 3034600 3077000 3216900 2847900 2631600 2822700 3224900 2 2 2 2 2 2 2 2 2 2 2 2036400000 1468800000 567540000 3 360 3 16;17;18 18;19;20;21;22;23 22 6 AAAAAAALQAK Unmodified 955.54508 0.5450795 953 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 3.09 4 4 4 6 6 43.718 43.885 2;3 8.1418E-30 11604 20211116_3436_TMUAki_TMT10x_P_F8 266.65 207.44 31502000 53267000 348200 46246000 37091000 47627000 35479000 26754000 30823000 29279000 36945000 29333000 49678000 2954700 47695000 35541000 47965000 35928000 28331000 31778000 28492000 35450000 12 12 10 12 12 12 12 12 12 12 12 21957000 36150000 244380 31526000 26477000 39513000 24703000 18243000 21299000 20300000 25192000 20445000 33715000 2061100 32608000 25354000 39282000 25045000 19683000 21955000 19741000 24181000 6 6 5 6 6 6 6 6 6 6 6 9544700 17117000 103820 14720000 10614000 8114700 10776000 8511600 9523900 8979200 11753000 8887800 15963000 893600 15087000 10187000 8683100 10883000 8648000 9822800 8750300 11269000 6 6 5 6 6 6 6 6 6 6 6 4012400000 2686500000 1325900000 4 953 4 19;20;21;22;23;24;25;26;27;28;29;30 24;25;26;27;28;29;30;31;32;33;34;35 28 12 AAAAAAGAASGLPGPVAQGLK Acetyl (Protein N-term) 1789.9686 0.96864688 2533 Q96P70 IPO9 Importin-9 yes yes 1 0 0 0 By MS/MS By MS/MS 6.8 0.4 1 4 2 3 71.407 71.726 2;3 1.1894E-26 24720 20211116_3446_TMUAki_TMT10x_S_F7 102.66 83.418 13604000 23511000 43786 20513000 15886000 23644000 16712000 16653000 16795000 15942000 18263000 12667000 21927000 1170000 21185000 15254000 23737000 16911000 17263000 17135000 15599000 17572000 5 5 3 5 5 5 5 5 5 5 5 8288700 13936000 28434 12566000 8732800 17274000 10582000 10239000 10324000 9851900 11124000 7717500 12999000 689270 12987000 8419600 17149000 10629000 10754000 10542000 9637800 10706000 3 3 1 3 3 3 3 3 3 3 3 5315400 9575000 15352 7946900 7153500 6369900 6130000 6414000 6471200 6090100 7138800 4949200 8928400 480730 8198500 6834300 6587500 6282000 6509400 6592100 5961200 6865800 2 2 2 2 2 2 2 2 2 2 2 3252200000 1526200000 1726000000 5 2533 5 31;32;33;34;35 36;37;38;39;40;41 40 6 AAAAAAGAGPEMVR Acetyl (Protein N-term);Oxidation (M) 1299.6241 0.62413446 845 P28482;P28482-2 MAPK1 Mitogen-activated protein kinase 1 yes no 1 0 1 0 By MS/MS By MS/MS 2 0 2 1 1 35.704 35.641 2 1.3638E-06 8419 20211116_3440_TMUAki_TMT10x_S_F2 51.727 39.68 337850 560050 7946.4 818260 1335200 1042000 665100 615210 667510 495100 687870 314630 523550 49333 819870 1263900 1038100 709750 643450 679690 488490 662930 2 2 1 2 2 2 2 2 2 2 2 294950 497230 7946.4 733980 1287000 999030 605150 568870 606550 442990 614600 274680 464860 45754 736020 1217400 991730 649530 596330 617290 437830 592630 1 1 1 1 1 1 1 1 1 1 1 42901 62813 0 84280 48212 42984 59951 46342 60952 52109 73274 39945 58691 3579.7 83846 46520 46412 60228 47121 62401 50655 70304 1 1 0 1 1 1 1 1 1 1 1 187880000 168190000 19686000 6 845 6 36;37 42;43 43 1014 2 AAAAAAGAGPEMVR Acetyl (Protein N-term) 1283.6292 0.62921983 845 P28482;P28482-2 MAPK1 Mitogen-activated protein kinase 1 yes no 1 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 44.448 44.299 2 1.0918E-06 13300 20211116_3429_TMUAki_TMT10x_P_F2 72.582 61.214 4898400 8259300 125930 10327000 6933400 5708400 4891800 5262200 5691300 3977600 7182900 4561800 7714600 551970 10320000 6604400 6090200 5093500 5334300 5807900 3937700 6882900 3 3 3 3 3 3 3 3 3 3 3 2092500 3313800 81764 4114600 4521500 3465400 2425500 1928300 1986600 1397800 2812800 1948900 3095200 283700 4131300 4287700 3535800 2556300 2022200 2069600 1387000 2687800 1 1 1 1 1 1 1 1 1 1 1 2805900 4945500 44166 6212400 2412000 2243000 2466300 3333900 3704700 2579800 4370200 2612900 4619400 268270 6188800 2316700 2554400 2537200 3312000 3738300 2550700 4195100 2 2 2 2 2 2 2 2 2 2 2 340650000 193730000 146920000 7 845 6 38;39 44;45;46 44 3 AAAAAAGEAR Acetyl (Protein N-term) 899.44609 0.44609374 573 P09417;P09417-2 QDPR Dihydropteridine reductase yes no 1 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 29.177 29.218 2 0.00068529 5728 20211116_3428_TMUAki_TMT10x_P_F1 63.534 63.534 300710 490610 3846.5 394610 480470 466630 379640 268740 299860 295680 353470 280010 457430 31033 410430 458390 466480 387880 284030 310450 287660 339320 2 2 2 2 2 2 2 2 2 2 2 148870 234130 926.69 191850 239340 266260 171750 128940 162160 160190 177500 138620 218310 14473 199810 227840 263580 177450 138960 165930 155160 170750 1 1 1 1 1 1 1 1 1 1 1 151830 256480 2919.8 202770 241130 200370 207890 139800 137700 135490 175970 141390 239120 16560 210610 230550 202910 210440 145060 144510 132500 168570 1 1 1 1 1 1 1 1 1 1 1 7098300 3161800 3936400 8 573 7 40;41 47;48 47 2 AAAAAAGEARR Acetyl (Protein N-term) 1055.5472 0.54720476 573 P09417;P09417-2 QDPR Dihydropteridine reductase yes no 1 0 0 1 By MS/MS By MS/MS 3.33 1.25 1 1 1 2 1 26.472 26.27 2 6.8814E-08 5770 20211116_3429_TMUAki_TMT10x_P_F2 87.308 77.558 101860 158910 1979 153150 121470 157050 115870 99744 111510 118170 123660 94858 148260 7144.3 156710 116450 158460 117690 104860 114070 114650 118920 3 3 1 3 3 3 3 3 3 3 3 77822 105650 1979 114870 87643 123550 83295 77903 76049 76779 86370 72474 98614 7144.3 116670 84047 124310 84493 81477 78051 75032 82998 2 2 1 2 2 2 2 2 2 2 2 24040 53261 0 38279 33832 33493 32576 21841 35463 41390 37293 22384 49642 0 40038 32408 34154 33198 23380 36016 39618 35919 1 1 0 1 1 1 1 1 1 1 1 4413400 2960500 1452900 9 573 8 42;43;44 49;50;51 49 3 AAAAAAGPSPGSGPGDSPEGPEGEAPERR Acetyl (Protein N-term) 2686.2219 0.22191404 3134 Q9UID3 VPS51 Vacuolar protein sorting-associated protein 51 homolog yes yes 1 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 35.607 35.59 3 1.2613E-63 10185 20211116_3439_TMUAki_TMT10x_S_F1 162.27 143.23 106190 218650 0 284210 205710 206320 118540 261080 289100 191300 241160 98860 204270 5958.1 284150 194970 216220 130080 260600 284940 189710 234120 3 3 0 3 3 3 3 3 3 3 3 37899 70407 0 83866 146720 143430 70629 100250 100980 64760 92775 35279 65747 3512.5 85498 138690 141480 76560 103040 101110 64710 89751 1 1 0 1 1 1 1 1 1 1 1 68287 148240 0 200340 58993 62889 47909 160830 188120 126540 148380 63581 138520 2445.6 198650 56278 74746 53517 157550 183840 125000 144370 2 2 0 2 2 2 2 2 2 2 2 75956000 53658000 22299000 10 3134 9 45;46 52;53;54 53 3 AAAAAAGSGTPREEEGPAGEAAASQPQAPTSVPGAR Acetyl (Protein N-term) 3329.5872 0.58723826 2920 Q9NR33 POLE4 DNA polymerase epsilon subunit 4 yes yes 1 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 43.31 43.173 3 1.0355E-60 12823 20211116_3429_TMUAki_TMT10x_P_F2 121.2 111.61 114110 228970 1650.3 230400 221680 343170 162530 191650 210920 170330 208850 106260 213660 5053 236630 211170 339240 167970 201860 212380 167240 201540 4 4 1 4 4 4 3 4 4 4 4 98583 205230 1650.3 208130 210580 330760 162530 164860 181540 156890 185200 91803 191510 5053 213960 200800 325660 167970 175750 183990 153550 178540 3 3 1 3 3 3 3 3 3 3 3 15527 23744 0 22273 11104 12410 0 26792 29374 13448 23651 14457 22150 0 22679 10368 13574 0 26115 28394 13684 22993 1 1 0 1 1 1 0 1 1 1 1 227880000 159170000 68710000 11 2920 10 47;48 55;56;57;58 56 4 AAAAAATAAAAASIR Acetyl (Protein N-term) 1298.6943 0.69426293 2309 Q8WVM8 SCFD1 Sec1 family domain-containing protein 1 yes yes 1 0 0 0 By MS/MS 6 0 1 1 66.884 66.817 2 8.4226E-15 20748 20211116_3445_TMUAki_TMT10x_S_F6 90.434 74.236 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 2309 11 49 59 59 1 AAAAAEQQQFYLLLGNLLSPDNVVRK Acetyl (Protein N-term) 2870.529 0.52904209 84 O00410 IPO5 Importin-5 yes yes 1 0 0 1 By MS/MS By MS/MS 3.2 2.4 4 1 3 2 83.236 83.234 3;4 4.9197E-73 29054 20211116_3429_TMUAki_TMT10x_P_F2 169.9 162.19 3654400 6234400 27255 5595600 5055300 6277600 4139500 3847800 3703800 4133000 4615700 3402600 5814900 298780 5763700 4824000 6298500 4233300 4043400 3819400 4024800 4424300 7 7 3 7 7 7 7 7 7 7 7 950310 1521000 15495 1333400 824860 2281400 938880 905210 946060 971910 1157600 884940 1418500 71298 1387700 794700 2234700 946610 991810 969640 946470 1110100 3 3 1 3 3 3 3 3 3 3 3 2704100 4713400 11760 4262200 4230400 3996200 3200600 2942600 2757700 3161100 3458100 2517700 4396400 227480 4376000 4029300 4063700 3286700 3051600 2849800 3078300 3314200 4 4 2 4 4 4 4 4 4 4 4 473570000 235680000 237880000 13 84 12 50;51;52;53;54 60;61;62;63;64;65;66 60 7 AAAAAGTATSQR Acetyl (Protein N-term) 1116.5523 0.55234972 3256 Q9Y2Z0;Q9Y2Z0-2 SUGT1 Suppressor of G2 allele of SKP1 homolog yes no 1 0 0 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 28.947 28.84 2 3.1264E-16 5525 20211116_3428_TMUAki_TMT10x_P_F1 121.5 90.199 457970 774710 9587.6 680320 737490 669330 552550 521540 541870 482880 635240 426490 722540 50819 700540 703070 679230 569810 536570 555040 473200 609900 4 4 4 4 4 4 4 4 4 4 4 230150 347930 2724.5 301660 472890 427810 268680 215350 243280 208820 279710 214310 324480 25020 312900 448460 423270 282420 229480 249900 204210 268700 2 2 2 2 2 2 2 2 2 2 2 227820 426780 6863.1 378660 264610 241520 283870 306200 298600 274070 355530 212180 398050 25799 387640 254620 255960 287390 307090 305150 268990 341210 2 2 2 2 2 2 2 2 2 2 2 53164000 40407000 12757000 14 3256 13 55;56;57;58 67;68;69;70 67 4 AAAAAMAEQESAR Acetyl (Protein N-term);Oxidation (M) 1333.5932 0.59322826 2061 Q7L5D6 GET4 Golgi to ER traffic protein 4 homolog yes yes 1 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 34.916 34.911 2 5.2762E-15 9872 20211116_3439_TMUAki_TMT10x_S_F1 115.42 93.271 499170 764090 33286 944540 747970 789890 552450 603700 611580 565610 700540 465020 713650 75890 948520 714290 810040 572420 622060 622740 553970 673030 2 2 2 2 2 2 2 2 2 2 2 271870 420540 28790 556900 592900 615280 377510 346060 373630 343480 401190 253350 392920 53868 559370 564830 617160 394070 365360 381260 335570 386160 1 1 1 1 1 1 1 1 1 1 1 227300 343550 4495.8 387640 155070 174600 174930 257640 237940 222130 299360 211670 320730 22023 389150 149460 192880 178350 256700 241490 218410 286880 1 1 1 1 1 1 1 1 1 1 1 280740000 150800000 129940000 15 2061 14 59;60 71;72 72 2573 2 AAAAAMAEQESAR Acetyl (Protein N-term) 1317.5983 0.59831364 2061 Q7L5D6 GET4 Golgi to ER traffic protein 4 homolog yes yes 1 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 45.67 45.449 2 3.011E-28 12162 20211116_3428_TMUAki_TMT10x_P_F1 159.34 152.89 1096600 1782600 12566 1907800 1022300 952760 923830 1445000 1257100 1309600 1640700 1021100 1663800 101580 1923100 978510 1040600 952540 1440300 1277900 1284600 1570900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1096600 1782600 12566 1907800 1022300 952760 923830 1445000 1257100 1309600 1640700 1021100 1663800 101580 1923100 978510 1040600 952540 1440300 1277900 1284600 1570900 1 1 1 1 1 1 1 1 1 1 1 120710000 0 120710000 16 2061 14 61;62 73;74 73 2 AAAAASAPQQLSDEELFSQLRR Acetyl (Protein N-term) 2400.2034 0.20335085 3250 Q9Y2U8 LEMD3 Inner nuclear membrane protein Man1 yes yes 1 0 0 1 By MS/MS 3.67 0.471 1 2 3 69.573 69.264 3 3.1428E-10 25007 20211116_3441_TMUAki_TMT10x_S_F3 84.166 68.925 1514300 2631000 39973 2268500 2149200 1876300 1918200 1991700 1994000 2126500 2311600 1410300 2453600 171690 2334000 2057400 1938200 1960100 2023200 2036500 2071300 2220100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1514300 2631000 39973 2268500 2149200 1876300 1918200 1991700 1994000 2126500 2311600 1410300 2453600 171690 2334000 2057400 1938200 1960100 2023200 2036500 2071300 2220100 1 1 1 1 1 1 1 1 1 1 1 666060000 0 666060000 17 3250 15 63;64;65 75;76 75 2 AAAAASASQDELNQLER Acetyl (Protein N-term) 1785.8493 0.8493196 1953 Q5VYK3 ECM29 Proteasome-associated protein ECM29 homolog yes yes 1 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 62.093 61.955 2 7.0162E-70 18945 20211116_3428_TMUAki_TMT10x_P_F1 228.83 188.98 2035600 3821500 18965 3193000 2680300 3992200 2943700 3137100 3068700 3001000 3121400 1895300 3563500 174750 3313800 2576400 3998400 2976000 3228700 3118300 2936600 3009400 2 2 1 2 2 2 2 2 2 2 2 972800 1796500 18965 1534500 1189000 2689400 1652000 1685300 1713200 1594300 1533000 905910 1675300 101350 1601300 1152800 2646000 1653400 1761400 1733900 1560800 1484400 1 1 1 1 1 1 1 1 1 1 1 1062800 2025000 0 1658500 1491300 1302700 1291700 1451800 1355500 1406700 1588400 989360 1888200 73394 1712500 1423600 1352400 1322600 1467200 1384400 1375700 1525100 1 1 0 1 1 1 1 1 1 1 1 803830000 487370000 316460000 18 1953 16 66;67 77;78 77 2 AAAADSFSGGPAGVR Acetyl (Protein N-term) 1374.6528 0.65279205 2438 Q96E14 RMI2 RecQ-mediated genome instability protein 2 yes yes 1 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 47.189 47.137 2 3.0002E-10 13145 20211116_3440_TMUAki_TMT10x_S_F2 91.701 79.854 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19 2438 17 68;69 79;80 80 2 AAAAECDVVMAATEPELLDDQEAKR Acetyl (Protein N-term);Oxidation (M) 2760.2582 0.25822447 2590 Q99615 DNAJC7 DnaJ homolog subfamily C member 7 yes yes 1 0 1 1 By MS/MS By MS/MS 1 0 4 2 2 73.42 73.365 3 2.041E-13 23722 20211116_3428_TMUAki_TMT10x_P_F1 88.627 81.515 1752400 3046100 0 2702800 1552200 3146200 2087700 1799000 1713400 1712700 1983100 1631400 2841100 106080 2788200 1499400 3147500 2078000 1894500 1769000 1676300 1904700 1 1 0 1 1 1 1 1 1 1 1 1752400 3046100 0 2702800 1552200 3146200 2087700 1799000 1713400 1712700 1983100 1631400 2841100 106080 2788200 1499400 3147500 2078000 1894500 1769000 1676300 1904700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1037200000 567940000 469290000 20 2590 18 70;71;72;73 81;82;83 82 2822 3 AAAAEGVLATR Acetyl (Protein N-term) 1070.572 0.57202253 2015 Q6QNY1 BLOC1S2 Biogenesis of lysosome-related organelles complex 1 subunit 2 yes yes 1 0 0 0 By MS/MS By MS/MS 1.4 0.49 3 2 3 2 51.649 51.472 2 3.0831E-08 16224 20211116_3429_TMUAki_TMT10x_P_F2 98.055 87.238 4000800 6207100 14587 6740900 4776300 5034000 3837600 5062100 4814400 4588500 5079900 3724800 5793900 299130 6813600 4553300 5234200 3972000 5131200 4864500 4500900 4892200 3 3 1 3 3 3 3 3 3 3 3 1100100 1742000 0 1723200 2374200 2674000 1358800 1588400 1497100 1429000 1417900 1024200 1625400 87387 1773500 2249500 2641100 1435600 1665000 1514200 1402200 1370300 1 1 0 1 1 1 1 1 1 1 1 2900700 4465100 14587 5017700 2402100 2360000 2478900 3473700 3317200 3159500 3662000 2700600 4168500 211740 5040100 2303700 2593200 2536400 3466200 3350300 3098700 3521900 2 2 1 2 2 2 2 2 2 2 2 547850000 351270000 196580000 21 2015 19 74;75;76;77;78 84;85;86;87 85 4 AAAAELSLLEK Acetyl (Protein N-term) 1156.634 0.63395409 209 O43324;O43324-2 EEF1E1 Eukaryotic translation elongation factor 1 epsilon-1 yes no 1 0 0 0 By MS/MS By MS/MS 2 0.707 2 4 2 5 3 52.804 52.714 2 4.3452E-11 25799 20211116_3428_TMUAki_TMT10x_P_F1 90.15 58.861 25641000 41389000 165.68 39705000 29721000 35976000 30539000 24338000 23214000 26627000 30538000 23871000 38614000 1808000 40568000 28494000 36619000 30708000 25401000 24197000 25911000 29232000 7 7 1 7 7 7 7 7 7 7 7 11777000 18724000 165.68 17342000 11217000 20601000 13135000 11304000 10533000 11871000 13346000 10965000 17466000 833540 17838000 10795000 20577000 13143000 11979000 10929000 11571000 12787000 4 4 1 4 4 4 4 4 4 4 4 13864000 22665000 0 22363000 18504000 15376000 17404000 13034000 12681000 14756000 17192000 12907000 21148000 974490 22730000 17699000 16042000 17565000 13422000 13268000 14341000 16445000 3 3 0 3 3 3 3 3 3 3 3 3811000000 1786000000 2025000000 22 209 20 79;80;81;82;83;84;85;86 88;89;90;91;92;93;94;95 88 8 AAAAGAAAAAAAEGEAPAEMGALLLEK Acetyl (Protein N-term) 2437.2159 0.21588937 2512 Q96KQ7;Q96KQ7-2;Q96KQ7-3 EHMT2 Histone-lysine N-methyltransferase EHMT2 yes no 1 0 0 0 By MS/MS By MS/MS 2.75 0.829 2 1 1 2 2 82.303 82.284 3 2.6562E-33 28679 20211116_3429_TMUAki_TMT10x_P_F2 89.197 82.78 8700600 12598000 60648 13382000 8357900 9660800 9542800 3600100 3301600 4392500 8401100 8101600 11758000 392830 13541000 8047400 9935100 9424500 3990000 3812800 4257300 7946400 5 5 3 5 5 5 5 5 5 5 5 6130800 9139500 58525 9153900 5186700 7209800 6537100 2133500 1928500 2721000 5709200 5708800 8528100 318120 9308400 5010700 7350700 6417600 2443000 2297700 2633300 5390400 3 3 2 3 3 3 3 3 3 3 3 2569800 3458600 2122.5 4227800 3171200 2451000 3005700 1466600 1373100 1671500 2691900 2392800 3230100 74715 4232200 3036600 2584400 3006900 1547000 1515100 1624000 2556000 2 2 1 2 2 2 2 2 2 2 2 1993400000 1205900000 787490000 23 2512 21 87;88;89;90 96;97;98;99;100 96 5 AAAAGGGGPGTAVGATGSGIAAAAAGLAVYR Acetyl (Protein N-term) 2555.3092 0.30921291 2379 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 1 0 0 0 By MS/MS By MS/MS 8 0 3 2 1 91.594 91.471 3 1.8136E-10 31248 20211116_3447_TMUAki_TMT10x_S_F8 60.993 42.161 165710 258650 2596.5 223500 166090 332490 209070 226280 236890 250410 214960 154310 241210 16100 232120 160490 329610 210680 236150 239000 243570 208050 2 2 1 2 2 2 2 2 2 2 2 150630 233900 2596.5 201890 150260 312990 190090 208710 220120 233120 193220 140270 218130 14903 209880 145230 309660 191670 218190 221660 226670 187220 1 1 1 1 1 1 1 1 1 1 1 15083 24749 0 21610 15827 19494 18973 17576 16774 17291 21747 14044 23082 1196.9 22236 15251 19947 19012 17958 17338 16899 20824 1 1 0 1 1 1 1 1 1 1 1 7091400 6463400 627960 24 2379 22 91;92;93 101;102;103 103 3 AAAAKPNNLSLVVHGPGDLR Acetyl (Protein N-term) 2041.1069 0.10687169 1473 Q00796;Q00796-2 SORD Sorbitol dehydrogenase yes no 1 0 0 1 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 52.843 53.109 3 1.5893E-41 16535 20211116_3435_TMUAki_TMT10x_P_F7 95.666 77.041 15620000 27985000 140620 29727000 21001000 26652000 17939000 22458000 22066000 20734000 21332000 14545000 26119000 1494000 30158000 20068000 27247000 18484000 22994000 22242000 20321000 20601000 9 9 7 9 9 9 9 9 9 9 9 7888000 14414000 52586 15251000 13474000 19679000 11182000 11823000 11623000 10521000 10691000 7344900 13453000 773770 15565000 12865000 19598000 11476000 12378000 11772000 10329000 10343000 4 4 2 4 4 4 4 4 4 4 4 7732000 13570000 88036 14477000 7526600 6972600 6756500 10635000 10443000 10213000 10640000 7199900 12666000 720210 14592000 7202800 7648400 7007800 10616000 10470000 9992300 10258000 5 5 5 5 5 5 5 5 5 5 5 6980700000 3058500000 3922200000 25 1473 23 94;95;96;97;98;99 104;105;106;107;108;109;110;111;112;113 106 10 AAAAMAAAAGGGAGAAR Acetyl (Protein N-term);Oxidation (M) 1372.6517 0.65174619 2999 Q9NX46 ADPRHL2 Poly(ADP-ribose) glycohydrolase ARH3 yes yes 1 0 1 0 By MS/MS 3 0 1 1 35.695 35.455 2 4.6344E-11 11201 20211116_3441_TMUAki_TMT10x_S_F3 74.306 67.647 159530 291170 6223.1 345890 172210 152750 174970 211880 227510 173430 256290 148580 271900 19203 346110 165570 168850 178960 211290 230180 170960 246340 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 159530 291170 6223.1 345890 172210 152750 174970 211880 227510 173430 256290 148580 271900 19203 346110 165570 168850 178960 211290 230180 170960 246340 1 1 1 1 1 1 1 1 1 1 1 31319000 0 31319000 26 2999 24 100 114 114 3067 1 AAAAPGASPSPGGDAAWSEAGPGPRPLAR Unmodified 2641.2997 0.29971085 1183 P52701;P52701-3;P52701-2 MSH6 DNA mismatch repair protein Msh6 yes no 0 0 0 1 By MS/MS By MS/MS 6.2 0.4 4 1 2 3 45.251 45.448 3;4 1.081E-142 11943 20211116_3445_TMUAki_TMT10x_S_F6 337.4 314.75 8413100 15212000 32084 16040000 13016000 13532000 9883000 10883000 11332000 9907100 12867000 7833100 14197000 589840 16268000 12398000 13881000 10233000 11170000 11519000 9716000 12365000 7 7 2 7 7 7 7 7 7 7 7 3691300 7054800 0 7907600 8576000 9496600 6466100 5071800 5507100 4620900 5811300 3436400 6586100 299460 8030600 8165100 9477100 6639400 5366400 5655300 4531600 5596600 3 3 0 3 3 3 3 3 3 3 3 4721800 8156800 32084 8132900 4439500 4035600 3417000 5811500 5824500 5286200 7056100 4396700 7611000 290380 8237300 4233100 4403800 3594000 5803400 5863800 5184400 6768600 4 4 2 4 4 4 4 4 4 4 4 1818400000 1052900000 765490000 27 1183 25 101;102;103;104;105 115;116;117;118;119;120;121 118 7 AAAASAAEAGIATTGTEDSDDALLK Unmodified 2319.1078 0.10777871 1232 P55036 PSMD4 26S proteasome non-ATPase regulatory subunit 4 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 3 1 62.132 61.934 3 2.7192E-60 20941 20211116_3430_TMUAki_TMT10x_P_F3 222.06 211.72 4090300 7172200 50800 6844900 5409500 9120300 5455400 6164100 5898400 5431700 5832000 3808800 6691200 393220 7040100 5190400 9084400 5545000 6394500 5978900 5335000 5628000 4 4 3 4 4 4 4 4 4 4 4 3331700 5613000 11028 5294500 4492900 8129600 4656000 4896500 4620100 4299300 4677500 3102100 5236400 291050 5466200 4312000 8034400 4713200 5123700 4703700 4223600 4510500 3 3 2 3 3 3 3 3 3 3 3 758640 1559100 39772 1550400 916630 990650 799360 1267600 1278400 1132300 1154500 706660 1454800 102180 1573900 878370 1050000 831790 1270800 1275200 1111500 1117500 1 1 1 1 1 1 1 1 1 1 1 3813100000 3116800000 696240000 28 1232 26 106;107;108;109 122;123;124;125 123 4 AAAAVSESWPELELAERER Acetyl (Protein N-term) 2155.0546 0.054561351 2188 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 1 0 0 1 By MS/MS 1 0 1 1 72.811 72.702 3 2.6567E-07 25263 20211116_3439_TMUAki_TMT10x_S_F1 69.122 63 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29 2188 27 110 126 126 1 AAAAVVAAAAR Unmodified 940.54541 0.54541385 2313 Q8WWH5 TRUB1 Probable tRNA pseudouridine synthase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 38 38.356 2 0.0002756 9366 20211116_3436_TMUAki_TMT10x_P_F8 95.541 77.915 3389400 5552400 2246.8 6404200 8924100 7260200 4208400 5672000 6753500 4473000 6193100 3155800 5184200 348470 6485900 8437600 7307700 4594200 5811200 6739300 4418000 5991600 3 3 1 3 3 3 3 3 3 3 3 2049700 3356700 0 3738400 7944700 6266800 3173800 3414600 3935300 2721500 3587800 1908400 3133500 240360 3824700 7497000 6164100 3492400 3595000 3957800 2686500 3471800 2 2 0 2 2 2 2 2 2 2 2 1339700 2195800 2246.8 2665700 979350 993380 1034600 2257400 2818300 1751500 2605300 1247400 2050600 108110 2661300 940570 1143500 1101800 2216200 2781500 1731500 2519800 1 1 1 1 1 1 1 1 1 1 1 47435000 26087000 21348000 30 2313 28 111;112 127;128;129 128 3 AAAAVVEFQR Acetyl (Protein N-term) 1102.5771 0.57710791 73 O00231;O00231-2 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 1 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 57.317 57.116 2 3.8888E-11 18998 20211116_3439_TMUAki_TMT10x_S_F1 147.19 127.62 14133000 21406000 305630 24075000 22996000 26116000 16486000 16653000 16750000 15403000 19093000 13161000 19984000 1544600 24403000 21902000 26266000 17071000 17372000 17112000 15095000 18346000 6 6 4 6 6 6 6 6 6 6 6 9892200 14852000 164080 16167000 18703000 22389000 13032000 11731000 11159000 10421000 12929000 9211600 13864000 1060400 16493000 17798000 22185000 13458000 12425000 11497000 10231000 12417000 4 4 2 4 4 4 4 4 4 4 4 4240700 6554000 141550 7907900 4292400 3726900 3453400 4922300 5591100 4982200 6164200 3949600 6120700 484230 7909200 4103200 4081500 3613000 4946200 5614800 4863400 5928700 2 2 2 2 2 2 2 2 2 2 2 3912400000 2300800000 1611600000 31 73 29 113;114;115;116;117;118 130;131;132;133;134;135;136 134 7 AAADGGGPGGASVGTEEDGGGVGHR Acetyl (Protein N-term) 2178.9526 0.95261548 20 A6NHR9;A6NHR9-2 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 1 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 32.412 32.428 3 1.3724E-48 6951 20211116_3428_TMUAki_TMT10x_P_F1 179.03 172.44 120080 179120 5370.1 256510 158530 169720 133020 157980 202960 135740 189130 111840 167430 14085 254920 151600 177990 138430 160550 202930 133490 182880 3 3 2 3 3 3 3 3 3 3 3 35560 55404 0 77719 94053 98700 57873 44285 54208 39446 50064 33099 51782 2353.9 78024 89181 98032 60481 47628 55161 38724 48424 1 1 0 1 1 1 1 1 1 1 1 84521 123720 5370.1 178790 64476 71024 75149 113690 148750 96293 139070 78737 115650 11731 176890 62416 79960 77947 112920 147770 94761 134450 2 2 2 2 2 2 2 2 2 2 2 45468000 30459000 15009000 32 20 30 119;120 137;138;139 137 3 AAADSDPNLDPLMNPHIR Oxidation (M) 1961.9265 0.92652407 406 O95159 ZFPL1 Zinc finger protein-like 1 yes yes 0 0 1 0 By MS/MS 3 0 2 2 45.593 45.252 3 8.2687E-07 15168 20211116_3441_TMUAki_TMT10x_S_F3 87.669 75.523 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33 406 31 121;122 140;141 140 308 2 AAAEDVNVTFEDQQK Unmodified 1663.7689 0.76894402 2906 Q9NQP4 PFDN4 Prefoldin subunit 4 yes yes 0 0 0 0 By MS/MS By MS/MS 2.17 1.07 2 2 1 1 2 4 49.067 48.952 3 7.7902E-24 16637 20211116_3441_TMUAki_TMT10x_S_F3 181.26 161.58 23283000 36555000 305370 41917000 32675000 35940000 25713000 27136000 28799000 24653000 29577000 21680000 34130000 2276800 42294000 31169000 36784000 26541000 27960000 29190000 24179000 28507000 7 7 5 7 7 7 7 7 7 7 7 13230000 20266000 220250 23964000 23160000 27695000 17176000 15758000 17175000 14403000 16913000 12320000 18924000 1371600 24242000 22066000 27715000 17735000 16584000 17463000 14122000 16323000 3 3 1 3 3 3 3 3 3 3 3 10052000 16289000 85115 17953000 9514400 8245200 8537000 11378000 11624000 10250000 12664000 9360200 15206000 905190 18052000 9103400 9068800 8806100 11376000 11727000 10057000 12184000 4 4 4 4 4 4 4 4 4 4 4 2641100000 1023200000 1617900000 34 2906 32 123;124;125;126;127;128 142;143;144;145;146;147;148;149 147 8 AAAEEEDGGPEGPNRER Acetyl (Protein N-term) 1824.7874 0.78744763 2614 Q99942 RNF5 E3 ubiquitin-protein ligase RNF5 yes yes 1 0 0 1 By MS/MS 1 0 1 1 27.596 27.596 2 1.97E-08 5059 20211116_3428_TMUAki_TMT10x_P_F1 77.593 67.361 2068 6442.4 0 0 6836.9 5839.8 4737.5 1965.7 1776.4 2761.9 2418.7 1925.5 5987.4 0 0 6502.8 5501.9 4823.6 2217.9 1959.6 2664.7 2313.4 1 1 0 0 1 1 1 1 1 1 1 2068 6442.4 0 0 6836.9 5839.8 4737.5 1965.7 1776.4 2761.9 2418.7 1925.5 5987.4 0 0 6502.8 5501.9 4823.6 2217.9 1959.6 2664.7 2313.4 1 1 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2240100 2240100 0 35 2614 33 129 150 150 1 AAAEEGHIIPR Unmodified 1162.6095 0.60947067 436 O95551;O95551-2;O95551-3 TDP2 Tyrosyl-DNA phosphodiesterase 2 yes no 0 0 0 0 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 31.412 31.253 3 1.0697E-05 9540 20211116_3441_TMUAki_TMT10x_S_F3 105.46 74.082 818850 1317800 4679.4 1469200 1059800 999110 880750 806910 795930 842160 1036400 762440 1230200 72282 1481100 1011800 1042500 900120 831160 821960 821050 992370 2 2 1 2 2 2 2 2 2 2 2 372750 604250 0 639650 634280 670180 446860 420820 391390 426780 465800 347040 563960 31224 650510 603240 675240 461360 440620 403240 416570 447030 1 1 0 1 1 1 1 1 1 1 1 446100 713570 4679.4 829570 425570 328930 433890 386090 404530 415380 570640 415400 666270 41058 830620 408550 367260 438770 390540 418720 404480 545340 1 1 1 1 1 1 1 1 1 1 1 50853000 21446000 29407000 36 436 34 130;131;132 151;152 152 2 AAAEELLAR Unmodified 942.51345 0.51344502 184 O15357 INPPL1 Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2 yes yes 0 0 0 0 By MS/MS 3 0 1 1 43.533 43.579 2 0.0384 13359 20211116_3430_TMUAki_TMT10x_P_F3 63.961 32.119 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37 184 35 133 153 153 1 AAAEQAISVR Unmodified 1014.5458 0.54580778 1486 Q01780;Q01780-2 EXOSC10 Exosome component 10 yes no 0 0 0 0 By MS/MS 3 0 1 1 33.938 33.699 2 0.009997 10496 20211116_3441_TMUAki_TMT10x_S_F3 67.207 35.336 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38 1486 36 134 154 154 1 AAAEVAGQFVIK Unmodified 1202.6659 0.66592292 480 P02786 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes yes 0 0 0 0 By MS/MS By MS/MS 6.75 0.433 1 3 1 3 59.592 60.01 2;3 3.4605E-15 19910 20211116_3446_TMUAki_TMT10x_S_F7 190.86 89.317 20674000 34454000 8852.6 37625000 24218000 23593000 22074000 19823000 18081000 19780000 25362000 19249000 32161000 1655300 37950000 23161000 24816000 22380000 20344000 18828000 19320000 24241000 4 4 1 4 4 4 4 4 4 4 4 5979100 9510900 8852.6 10305000 8057400 10917000 6722300 5382200 4881400 5666500 7170900 5567200 8877700 533070 10466000 7692800 10959000 6831600 5760100 5127800 5522500 6846600 1 1 1 1 1 1 1 1 1 1 1 14695000 24943000 0 27320000 16161000 12676000 15352000 14441000 13200000 14114000 18191000 13682000 23283000 1122300 27484000 15468000 13857000 15548000 14584000 13700000 13798000 17394000 3 3 0 3 3 3 3 3 3 3 3 1131400000 506840000 624530000 39 480 37 135;136;137;138 155;156;157;158;159 157 5 AAAFEEQENETVVVK Unmodified 1662.8101 0.81008055 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 52.303 52.074 3 7.0804E-07 16928 20211116_3430_TMUAki_TMT10x_P_F3 112.72 94.127 6491600 10693000 116000 11146000 9734500 12498000 7921000 8159100 8373200 7342200 9187400 6045200 9979600 691730 11359000 9295300 12551000 8143500 8490200 8527400 7204500 8837500 4 4 4 4 4 4 4 4 4 4 4 4883000 7935900 92008 8003900 7999600 11051000 6325100 6066100 6201800 5456100 6732700 4547200 7405300 534230 8206100 7633900 10958000 6499600 6400900 6333500 5353800 6478400 3 3 3 3 3 3 3 3 3 3 3 1608600 2757300 23996 3141900 1734900 1447300 1595900 2093000 2171500 1886200 2454700 1498000 2574300 157500 3152700 1661500 1593500 1643900 2089200 2194000 1850600 2359200 1 1 1 1 1 1 1 1 1 1 1 548580000 354780000 193800000 40 3293 38 139;140;141;142 160;161;162;163 161 4 AAAGAAATHLEVAR Acetyl (Protein N-term) 1349.7052 0.70516197 2548 Q96S52 PIGS GPI transamidase component PIG-S yes yes 1 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 37.235 37.103 2 1.2322E-29 10518 20211116_3429_TMUAki_TMT10x_P_F2 135.8 117.02 1112000 2042900 20091 2263200 1603900 1710900 1257900 1743500 1776500 1442900 1929800 1035500 1907100 114350 2285000 1530200 1777800 1310000 1762000 1790000 1421600 1856800 5 5 2 5 5 5 5 5 5 5 5 351140 678380 10443 712550 850360 948580 537970 576400 613670 534680 623700 327020 633130 45836 728030 808140 943430 564360 603570 621350 523910 601350 1 1 1 1 1 1 1 1 1 1 1 760900 1364500 9647.8 1550600 753580 762370 719890 1167100 1162800 908190 1306100 708520 1273900 68519 1557000 722080 834370 745690 1158500 1168700 897660 1255500 4 4 1 4 4 4 4 4 4 4 4 78778000 46827000 31951000 41 2548 39 143;144;145 164;165;166;167;168 164 5 AAAGAAATHLEVAR Unmodified 1307.6946 0.69459728 2548 Q96S52 PIGS GPI transamidase component PIG-S yes yes 0 0 0 0 By MS/MS 5 0 1 1 32.113 32.053 3 2.9018E-05 7541 20211116_3433_TMUAki_TMT10x_P_F5 98.439 69.092 428080 684680 1980.6 746250 888120 822990 504350 437070 471170 387800 575650 398600 639110 43780 758100 842050 825010 530620 462390 484500 380780 552070 1 1 1 1 1 1 1 1 1 1 1 428080 684680 1980.6 746250 888120 822990 504350 437070 471170 387800 575650 398600 639110 43780 758100 842050 825010 530620 462390 484500 380780 552070 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 66553000 66553000 0 42 2548 39 146 169 169 1 AAAGVVSGK Acetyl (Protein N-term) 800.43922 0.43921744 2269 Q8TC07-2;Q8TC07 TBC1D15 TBC1 domain family member 15 yes no 1 0 0 0 By MS/MS 3 0 1 1 38.222 38.265 2 0.0042932 11268 20211116_3430_TMUAki_TMT10x_P_F3 40.002 20.642 229270 397210 0 349250 314030 394120 261700 194840 197610 204300 270840 213470 370460 19817 360350 299770 394260 266200 208440 206430 199140 259000 1 1 0 1 1 1 1 1 1 1 1 229270 397210 0 349250 314030 394120 261700 194840 197610 204300 270840 213470 370460 19817 360350 299770 394260 266200 208440 206430 199140 259000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6798700 6798700 0 43 2269 40 147 170 170 1 AAAIGIDLGTTYSCVGVFQHGK Unmodified 2264.126 0.12595216 596 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 0 0 By MS/MS By MS/MS 2.75 2.17 2 4 1 1 3 5 69.342 69.152 3;4 1.1883E-44 22110 20211116_3440_TMUAki_TMT10x_S_F2 202.5 189.83 62968000 103190000 1030000 95248000 69648000 111570000 76119000 70410000 62509000 70395000 77185000 58636000 96254000 6126100 97973000 66997000 111730000 76451000 73665000 64709000 68752000 74004000 12 12 8 12 12 12 12 12 12 12 12 48693000 76277000 600000 69654000 47395000 92015000 55631000 51964000 46207000 51941000 56740000 45341000 71150000 4497100 71860000 45683000 91460000 55707000 54854000 47794000 50729000 54409000 8 8 5 8 8 8 8 8 8 8 8 14275000 26909000 429950 25594000 22252000 19557000 20488000 18447000 16302000 18455000 20445000 13294000 25104000 1629000 26113000 21314000 20271000 20744000 18812000 16915000 18024000 19594000 4 4 3 4 4 4 4 4 4 4 4 7384700000 4215400000 3169200000 44 596 41 148;149;150;151;152;153;154;155 171;172;173;174;175;176;177;178;179;180;181;182;183;184 182 14 AAALEFLNR Unmodified 1003.5451 0.5450795 897 P31948;P31948-2 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 By MS/MS 7 0 1 1 56.884 57.618 2 5.8416E-05 18359 20211116_3435_TMUAki_TMT10x_P_F7 147.06 110.87 9927500 15888000 0 18573000 18169000 22506000 12937000 12281000 13141000 12119000 14088000 9242800 14836000 860260 18817000 17285000 22455000 13403000 12998000 13393000 11843000 13561000 2 2 0 2 2 2 2 2 2 2 2 9927500 15888000 0 18573000 18169000 22506000 12937000 12281000 13141000 12119000 14088000 9242800 14836000 860260 18817000 17285000 22455000 13403000 12998000 13393000 11843000 13561000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 527280000 527280000 0 45 897 42 156 185;186 185 2 AAALEFLNRFEEAK Unmodified 1607.8308 0.83075641 897 P31948;P31948-2 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 1 By MS/MS By MS/MS 6.62 0.992 1 3 2 2 4 4 74.25 74.31 3 5.8831E-24 25817 20211116_3446_TMUAki_TMT10x_S_F7 195.2 170.78 83977000 118470000 1117600 149660000 66831000 94908000 76306000 53370000 58627000 61988000 83742000 78197000 110660000 7384900 149650000 64362000 99130000 76358000 56617000 61308000 60186000 80005000 7 7 5 7 7 7 7 7 7 7 7 62160000 87848000 1057600 110740000 48589000 79250000 53597000 40569000 44176000 46931000 62176000 57883000 82057000 5739300 110880000 46766000 81808000 53812000 43390000 45993000 45573000 59421000 5 5 4 5 5 5 5 5 5 5 5 21818000 30619000 59963 38920000 18242000 15658000 22710000 12801000 14451000 15056000 21566000 20314000 28601000 1645700 38771000 17596000 17322000 22546000 13227000 15315000 14612000 20584000 2 2 1 2 2 2 2 2 2 2 2 7037400000 3587700000 3449700000 46 897 43 157;158;159;160;161;162;163;164 187;188;189;190;191;192;193;194;195;196;197 196 11 AAALEFLNRFEEAKR Unmodified 1763.9319 0.93186744 897 P31948;P31948-2 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 2 By MS/MS By MS/MS 2 0.707 2 4 2 4 4 67.235 66.984 3;4 8.073E-34 22469 20211116_3429_TMUAki_TMT10x_P_F2 233.78 199.09 74705000 113040000 1184100 117470000 77469000 90920000 85059000 66213000 68598000 70035000 84177000 69564000 105490000 7067100 119130000 74526000 93705000 85373000 68682000 71060000 68242000 80720000 9 9 7 9 9 9 9 9 9 9 9 33666000 49615000 1087600 51779000 32820000 49706000 38098000 28419000 31078000 29596000 36623000 31354000 46304000 3792900 52639000 31668000 50286000 38151000 30004000 32120000 28856000 35157000 4 4 4 4 4 4 4 4 4 4 4 41039000 63422000 96485 65690000 44649000 41214000 46961000 37794000 37520000 40439000 47554000 38210000 59188000 3274200 66488000 42858000 43419000 47221000 38678000 38940000 39386000 45563000 5 5 3 5 5 5 5 5 5 5 5 15261000000 8158600000 7102000000 47 897 44 165;166;167;168;169;170;171;172 198;199;200;201;202;203;204;205 199 8 AAANFFSASCVPCADQSSFPK Unmodified 2260.9881 0.98813804 49 CON__Q29443;CON__Q0IIK2 yes no 0 0 0 0 By MS/MS 8 0 1 1 69.781 69.613 3 6.4975E-08 21621 20211116_3447_TMUAki_TMT10x_S_F8 90.968 82.865 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 48 49 45 173 206 206 1 AAAPAPEEEMDECEQALAAEPK Oxidation (M) 2372.0148 0.014806305 821 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 1 0 By MS/MS By MS/MS 1.67 0.667 4 4 1 4 5 49.049 48.892 3;4 3.9437E-14 15594 20211116_3439_TMUAki_TMT10x_S_F1 123 119.05 31387000 51766000 283390 64174000 47942000 60236000 36811000 46542000 50803000 39566000 47168000 29224000 48349000 2879600 64533000 45692000 61300000 38354000 47803000 50942000 38930000 45614000 16 16 8 16 16 16 16 16 16 16 16 19082000 30644000 176380 38969000 39117000 51673000 28995000 28086000 30653000 23651000 28979000 17767000 28625000 1847000 39357000 37252000 51327000 29992000 29613000 31052000 23281000 28007000 9 9 4 9 9 9 9 9 9 9 9 12305000 21122000 107010 25205000 8824800 8563400 7815700 18456000 20150000 15916000 18189000 11457000 19724000 1032600 25176000 8440200 9972700 8362400 18189000 19889000 15649000 17607000 7 7 4 7 7 7 7 7 7 7 7 9938600000 6397900000 3540700000 49 821 46 174;175;176;177;178;179;180;181;182 207;208;209;210;211;212;213;214;215;216;217;218;219;220;221;222;223 216 989 17 AAAPAPEEEMDECEQALAAEPK Unmodified 2356.0199 0.019891683 821 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 By MS/MS By MS/MS 1.8 0.872 5 2 3 5 5 59.657 59.444 2;3;4 2.1269E-26 17863 20211116_3428_TMUAki_TMT10x_P_F1 169.79 159 43703000 69034000 215020 79941000 47302000 55289000 45996000 32534000 26976000 31352000 47703000 40689000 64457000 3403500 80414000 45305000 57334000 46135000 34191000 29011000 30669000 45376000 16 16 6 16 16 16 16 16 16 16 16 28561000 42263000 95878 50188000 32951000 43663000 33491000 19693000 16166000 19111000 29583000 26590000 39466000 2128200 50542000 31589000 44344000 33407000 21215000 17681000 18688000 28122000 8 8 2 8 8 8 8 8 8 8 8 15142000 26771000 119150 29754000 14351000 11626000 12505000 12841000 10810000 12242000 18120000 14099000 24991000 1275300 29872000 13716000 12989000 12729000 12976000 11330000 11981000 17254000 8 8 4 8 8 8 8 8 8 8 8 12147000000 7450000000 4697400000 50 821 46 183;184;185;186;187;188;189;190;191;192 224;225;226;227;228;229;230;231;232;233;234;235;236;237;238;239;240 229 17 AAAPQAWAGPMEEPPQAQAPPR Oxidation (M) 2286.0851 0.085149973 1858 Q16643;Q16643-3;Q16643-2 DBN1 Drebrin yes no 0 0 1 0 By MS/MS 4 0 1 1 46.294 46.419 3 2.3494E-10 12862 20211116_3431_TMUAki_TMT10x_P_F4 102.37 94.541 519530 784090 7003.5 913450 1237600 1399900 814300 765750 723570 610420 799120 483790 732130 59657 930010 1176400 1381900 845300 805920 742760 602570 768540 1 1 1 1 1 1 1 1 1 1 1 519530 784090 7003.5 913450 1237600 1399900 814300 765750 723570 610420 799120 483790 732130 59657 930010 1176400 1381900 845300 805920 742760 602570 768540 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 375550000 375550000 0 51 1858 47 193 241 241 2472 1 AAAPRPPVSAASGRPQDDTDSSR Unmodified 2308.1156 0.11559848 2290 Q8TF74 WIPF2 WAS/WASL-interacting protein family member 2 yes yes 0 0 0 2 By MS/MS 4.5 0.5 1 1 2 28.925 28.912 4 1.0765E-10 5918 20211116_3431_TMUAki_TMT10x_P_F4 103.92 95.046 212580 335700 0 284220 380790 498270 227580 165670 219800 175080 340790 197860 313060 10268 296790 360640 486930 238610 185510 228240 170600 325000 2 2 0 2 2 2 2 2 2 2 2 212580 335700 0 284220 380790 498270 227580 165670 219800 175080 340790 197860 313060 10268 296790 360640 486930 238610 185510 228240 170600 325000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27303000 27303000 0 52 2290 48 194;195 242;243 242 2 AAAQLLQSQAQQSGAQQTK Unmodified 1956.0025 0.0024662011 2965 Q9NVA2;Q9NVA2-2 SEPT11 Septin-11 yes no 0 0 0 0 By MS/MS 8 0 1 1 45.361 45.303 3 8.3083E-42 11759 20211116_3447_TMUAki_TMT10x_S_F8 216.77 195.21 623900 1187100 11243 1549200 617880 512320 605180 1160600 1248400 858550 1265500 581000 1109000 62120 1539400 592820 600450 634440 1138300 1242500 850950 1220300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 623900 1187100 11243 1549200 617880 512320 605180 1160600 1248400 858550 1265500 581000 1109000 62120 1539400 592820 600450 634440 1138300 1242500 850950 1220300 1 1 1 1 1 1 1 1 1 1 1 106470000 0 106470000 53 2965 49 196 244 244 1 AAAQLLQSQAQQSGAQQTKK Unmodified 2084.0974 0.097429219 2965 Q9NVA2;Q9NVA2-2 SEPT11 Septin-11 yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 42.053 41.931 4 6.25E-25 10925 20211116_3440_TMUAki_TMT10x_S_F2 175.21 146.32 1665200 2374100 5319.3 3093200 5510900 3871300 2265500 2851700 3375300 1781200 2799500 1550400 2218000 187970 3116400 5202200 3872900 2502000 2918800 3364800 1783700 2718400 3 3 2 3 3 3 3 3 3 3 3 1406900 1987000 5319.3 2588200 5288700 3698800 2026400 2376100 2845100 1503900 2292400 1310000 1856300 175970 2614500 4989400 3669800 2251400 2456500 2839000 1504800 2228500 2 2 2 2 2 2 2 2 2 2 2 258240 387120 0 505020 222180 172540 239080 475650 530130 277230 507080 240380 361670 12001 501910 212880 203090 250640 462370 525760 278930 489870 1 1 0 1 1 1 1 1 1 1 1 132250000 105530000 26723000 54 2965 50 197;198 245;246;247 247 3 AAASGQPRPEMQCPAEHEEDMYR 2 Oxidation (M) 2691.1112 0.11118308 2418 Q96BN8 OTULIN Ubiquitin thioesterase otulin yes yes 0 0 2 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 28.811 28.557 4 2.0293E-15 6943 20211116_3429_TMUAki_TMT10x_P_F2 126.97 119.26 42744 75781 0 95761 123730 105290 60669 90028 138920 61122 71495 39796 70786 3148 96423 117030 106330 67259 91440 135510 60886 71056 2 2 0 2 2 2 2 2 2 2 2 28780 44509 0 54666 113850 92861 47045 51308 74946 37844 45664 26793 41570 3148 55622 107460 91311 52077 53861 73985 37516 44957 1 1 0 1 1 1 1 1 1 1 1 13964 31272 0 41095 9881.1 12432 13624 38720 63978 23278 25831 13002 29216 0 40801 9568.6 15024 15182 37579 61529 23370 26099 1 1 0 1 1 1 1 1 1 1 1 40331000 24498000 15833000 55 2418 51 199;200 248;249 248 2745;2746 2 AAASGQPRPEMQCPAEHEEDMYR Oxidation (M) 2675.1163 0.11626846 2418 Q96BN8 OTULIN Ubiquitin thioesterase otulin yes yes 0 0 1 1 By MS/MS 2 0 1 1 31.507 31.28 4 2.3241E-11 8045 20211116_3429_TMUAki_TMT10x_P_F2 115.96 108.25 45794 78213 4274 111670 179820 146240 87804 69478 65357 62376 89068 42671 73106 9657 112080 170370 145130 93179 74302 68313 61212 85186 1 1 1 1 1 1 1 1 1 1 1 45794 78213 4274 111670 179820 146240 87804 69478 65357 62376 89068 42671 73106 9657 112080 170370 145130 93179 74302 68313 61212 85186 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 45326000 45326000 0 56 2418 51 201 250 250 2745;2746 1 AAATGAVAASAASGQAEGK Acetyl (Protein N-term) 1629.7958 0.79582747 2986 Q9NWH9 SLTM SAFB-like transcription modulator yes yes 1 0 0 0 By MS/MS By MS/MS 2.8 0.748 2 2 1 2 3 46.762 46.662 2 3.2323E-135 14577 20211116_3430_TMUAki_TMT10x_P_F3 241.15 224.13 3188300 5269300 4790.6 6092200 3294200 3532200 2624200 4325500 4375200 3877700 4509500 2968600 4919900 258990 6118700 3141300 3774100 2751100 4344400 4379100 3805600 4346000 5 5 3 5 5 5 5 5 5 5 5 748430 1094500 2804.5 1373500 1300700 1647000 942800 893890 1001200 846320 939470 696880 1022400 72398 1385500 1238300 1644100 976840 945430 1013800 828520 908180 1 1 1 1 1 1 1 1 1 1 1 2439900 4174700 1986.1 4718800 1993500 1885200 1681400 3431600 3373900 3031400 3570000 2271700 3897500 186590 4733100 1903000 2130100 1774200 3399000 3365300 2977100 3437800 4 4 2 4 4 4 4 4 4 4 4 780300000 412410000 367900000 57 2986 52 202;203;204;205;206 251;252;253;254;255 251 5 AAATGAVAASAASGQAEGKK Acetyl (Protein N-term) 1757.8908 0.89079049 2986 Q9NWH9 SLTM SAFB-like transcription modulator yes yes 1 0 0 1 By MS/MS By MS/MS 4.67 0.745 3 2 1 3 3 42.619 42.771 3 3.8004E-24 10677 20211116_3444_TMUAki_TMT10x_S_F5 88.176 81.226 3131700 5403600 46609 5688500 4520500 5272000 3429800 6216400 5772600 5149400 5265500 2916200 5043200 305560 5776900 4308800 5417700 3608500 6240800 5752100 5073100 5095200 4 4 2 4 4 4 4 4 4 4 4 1174000 1932400 0 1917000 2559500 3395200 1745700 2417800 2241300 2077500 1958900 1093000 1803000 110270 1978800 2433300 3345700 1828700 2497400 2248400 2043100 1898500 1 1 0 1 1 1 1 1 1 1 1 1957800 3471200 46609 3771500 1961000 1876800 1684000 3798600 3531300 3071800 3306600 1823100 3240100 195290 3798000 1875500 2072000 1779800 3743400 3503700 3030000 3196700 3 3 2 3 3 3 3 3 3 3 3 491630000 270270000 221360000 58 2986 53 207;208;209;210;211;212 256;257;258;259;260;261 260 6 AAATPESQEPQAK Unmodified 1326.6416 0.64155866 1087 P49006 MARCKSL1 MARCKS-related protein yes yes 0 0 0 0 By MS/MS 3 0 1 1 31.195 30.942 3 3.786E-06 9450 20211116_3441_TMUAki_TMT10x_S_F3 103.2 88.785 182490 327280 4398.5 264250 223770 194170 230950 207910 218280 191580 248440 169940 305150 19807 272980 215010 202440 233500 210210 223690 187780 238720 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 182490 327280 4398.5 264250 223770 194170 230950 207910 218280 191580 248440 169940 305150 19807 272980 215010 202440 233500 210210 223690 187780 238720 1 1 1 1 1 1 1 1 1 1 1 42609000 0 42609000 59 1087 54 213 262 262 1 AAATQPDAKDTPDEPWAFPAR Unmodified 2254.0655 0.065460388 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 1 By MS/MS 5 0 2 2 53.072 53.272 3 1.1977E-19 16006 20211116_3433_TMUAki_TMT10x_P_F5 155.93 147.11 1613500 2869000 27025 3172400 2932700 3546700 2740100 1241400 1063200 1337300 2094600 1502500 2678200 177430 3220600 2808800 3538300 2737600 1381400 1191600 1302200 1988600 1 1 1 1 1 1 1 1 1 1 1 1613500 2869000 27025 3172400 2932700 3546700 2740100 1241400 1063200 1337300 2094600 1502500 2678200 177430 3220600 2808800 3538300 2737600 1381400 1191600 1302200 1988600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 275020000 275020000 0 60 2048 55 214;215 263;264 263 2 AAAVAAAGAGEPQSPDELLPK Acetyl (Protein N-term) 2004.0164 0.016384931 2940 Q9NS69 TOMM22 Mitochondrial import receptor subunit TOM22 homolog yes yes 1 0 0 0 By MS/MS 3 0 1 1 74.844 74.658 2 1.0063E-13 27096 20211116_3441_TMUAki_TMT10x_S_F3 71.529 51.887 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 61 2940 56 216 265 265 1 AAAVAMETDDAGNRLR Acetyl (Protein N-term) 1701.8104 0.81043168 3274 Q9Y3C7 MED31 Mediator of RNA polymerase II transcription subunit 31 yes yes 1 0 0 1 By MS/MS 1 0 1 1 47.023 46.791 2 1.8574E-06 14785 20211116_3439_TMUAki_TMT10x_S_F1 56.359 44.723 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 62 3274 57 217 266 266 1 AAAVLPVLDLAQR Unmodified 1335.7874 0.78743503 733 P19404 NDUFV2 NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 6.4 2.73 1 1 3 2 3 72.431 72.478 2 3.6674E-06 22855 20211116_3447_TMUAki_TMT10x_S_F8 104.52 50.115 15069000 25513000 54646 22474000 16990000 29991000 17795000 21740000 18171000 17410000 19686000 14031000 23795000 1214900 23254000 16307000 29904000 18019000 22391000 18523000 17182000 18943000 4 4 1 4 4 4 4 4 4 4 4 15069000 25513000 54646 22474000 16990000 29991000 17795000 21740000 18171000 17410000 19686000 14031000 23795000 1214900 23254000 16307000 29904000 18019000 22391000 18523000 17182000 18943000 4 4 1 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 627740000 627740000 0 63 733 58 218;219;220;221;222 267;268;269;270;271;272;273;274 273 8 AAAVLSGPSAGSAAGVPGGTGGLSAVSSGPR Acetyl (Protein N-term) 2607.3253 0.3252569 2173 Q8IZL8 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes yes 1 0 0 0 By MS/MS 6.5 0.5 1 1 2 69.771 69.971 3 1.1504E-06 23637 20211116_3435_TMUAki_TMT10x_P_F7 45.748 31.587 1988200 3030700 0 3174200 1878200 3504500 2233700 1948900 1872500 2064000 2505200 1850900 2828500 128560 3233000 1807600 3514800 2236000 2063400 1943200 2011100 2397100 1 1 0 1 1 1 1 1 1 1 1 1988200 3030700 0 3174200 1878200 3504500 2233700 1948900 1872500 2064000 2505200 1850900 2828500 128560 3233000 1807600 3514800 2236000 2063400 1943200 2011100 2397100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1787200000 1787200000 0 64 2173 59 223;224 275 275 1 AAAVSSVVR Acetyl (Protein N-term) 900.50288 0.50288033 16 A6NDU8 C5orf51 UPF0600 protein C5orf51 yes yes 1 0 0 0 By MS/MS 3 0 1 1 44.006 43.671 2 0.00014741 14541 20211116_3441_TMUAki_TMT10x_S_F3 63.673 63.673 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 65 16 60 225 276 276 1 AADAEAEVASLNR Unmodified 1315.6368 0.63680763 525 P06753 TPM3 Tropomyosin alpha-3 chain yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 38.651 38.699 3 1.5673E-06 9595 20211116_3428_TMUAki_TMT10x_P_F1 113.99 3.0647 969790 1597300 22352 1681400 1802100 1644300 1449900 1153900 1066700 974420 1520000 903140 1490700 112890 1708800 1720400 1666400 1477300 1192600 1118000 959060 1452200 2 2 2 2 2 2 2 2 2 2 2 669550 1078200 13558 1092000 1511900 1386800 1166600 818570 790170 664070 1098600 623520 1006100 79944 1117500 1441900 1381900 1189700 856320 831270 654930 1050200 1 1 1 1 1 1 1 1 1 1 1 300240 519060 8793.2 589320 290120 257500 283340 335340 276500 310340 421340 279620 484600 32945 591280 278540 284540 287540 336270 286730 304130 401970 1 1 1 1 1 1 1 1 1 1 1 92432000 52772000 39660000 66 525 61 226;227;228 277;278;279 277 3 AADAEAEVASLNRR Unmodified 1471.7379 0.73791866 525 P06753 TPM3 Tropomyosin alpha-3 chain yes yes 0 0 0 1 By MS/MS 1 0 1 1 34.409 34.398 3 4.9761E-19 9669 20211116_3439_TMUAki_TMT10x_S_F1 169.46 0.41055 403580 636160 2818.4 763410 365980 317490 391440 410170 511180 366200 600730 375790 594090 35560 763150 351730 353030 399430 411040 517980 359470 576730 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 403580 636160 2818.4 763410 365980 317490 391440 410170 511180 366200 600730 375790 594090 35560 763150 351730 353030 399430 411040 517980 359470 576730 1 1 1 1 1 1 1 1 1 1 1 67469000 0 67469000 67 525 62 229 280 280 1 AADAVEDLR Unmodified 958.47197 0.47197413 3190 Q9UNF0;Q9UNF0-2 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 yes no 0 0 0 0 By MS/MS 1.5 0.5 1 1 2 37.426 37.433 2 0.0050584 11097 20211116_3439_TMUAki_TMT10x_S_F1 78.516 46.161 829350 1446000 3702.6 1581900 857140 722450 793810 966040 1100600 889830 1200100 772210 1349700 69581 1591300 820300 794470 818000 967630 1109700 872190 1154600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 829350 1446000 3702.6 1581900 857140 722450 793810 966040 1100600 889830 1200100 772210 1349700 69581 1591300 820300 794470 818000 967630 1109700 872190 1154600 2 2 1 2 2 2 2 2 2 2 2 26620000 0 26620000 68 3190 63 230;231 281;282 281 2 AADEEAFEDNSEEYIR Unmodified 1886.7806 0.78063091 1234 P55060;P55060-3;P55060-4 CSE1L Exportin-2 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 3 1 2 52.661 52.471 2;3 1.0435E-35 15027 20211116_3428_TMUAki_TMT10x_P_F1 207.31 188.49 12857000 22098000 79058 25993000 13002000 13965000 10402000 14665000 15335000 13824000 17131000 11971000 20634000 1091400 26062000 12403000 14984000 10840000 14850000 15448000 13536000 16470000 7 7 5 7 7 7 7 7 7 7 7 3224600 4880100 11816 5537700 5907900 7657700 4415100 4549400 4995700 4023400 4348000 3002300 4556100 297860 5634600 5626800 7600500 4574500 4766700 5033800 3951100 4214400 2 2 1 2 2 2 2 2 2 2 2 9632300 17218000 67242 20456000 7094000 6307400 5986700 10116000 10339000 9800600 12783000 8968900 16078000 793520 20428000 6776200 7383900 6265200 10083000 10415000 9584700 12255000 5 5 4 5 5 5 5 5 5 5 5 1826000000 1043100000 782900000 69 1234 64 232;233;234 283;284;285;286;287;288;289 284 7 AADEEAFEDNSEEYIRR Unmodified 2042.8817 0.88174194 1234 P55060;P55060-3;P55060-4 CSE1L Exportin-2 yes no 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 4 2 2 4 4 45.208 45.072 3;4 7.9518E-70 11976 20211116_3428_TMUAki_TMT10x_P_F1 306.96 284.73 13960000 22745000 74870 28383000 21355000 25465000 15485000 22615000 24652000 19237000 20663000 12998000 21245000 1155600 28514000 20322000 26058000 16297000 23036000 24537000 18927000 20057000 11 11 7 11 11 11 11 11 11 11 11 7429100 11784000 15282 14741000 17300000 21218000 12400000 12596000 13389000 10329000 10786000 6916100 11007000 616960 14926000 16456000 21023000 12865000 13174000 13485000 10181000 10485000 5 5 2 5 5 5 5 5 5 5 5 6531200 10962000 59589 13642000 4055200 4246200 3084300 10019000 11263000 8908100 9877600 6081400 10238000 538660 13587000 3865900 5035000 3432500 9862300 11052000 8745900 9571400 6 6 5 6 6 6 6 6 6 6 6 24434000000 19197000000 5236900000 70 1234 65 235;236;237;238;239;240;241;242 290;291;292;293;294;295;296;297;298;299;300 290 11 AADFQLHTHVNDGTEFGGSIYQK Unmodified 2534.1826 0.18261541 3228 Q9Y277;Q9Y277-2 VDAC3 Voltage-dependent anion-selective channel protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 5.83 0.687 2 3 1 2 4 52.929 53.133 3;4 3.6632E-58 15077 20211116_3445_TMUAki_TMT10x_S_F6 237.61 223 34954000 62044000 301110 69676000 45725000 50054000 38643000 42720000 39727000 40119000 45830000 32547000 57922000 2308600 70248000 43677000 52037000 39601000 43727000 40584000 39289000 44022000 9 9 4 9 9 9 9 9 9 9 9 13447000 22177000 22233 25672000 19040000 28616000 15555000 16382000 15293000 15182000 16780000 12520000 20707000 294800 25987000 18170000 28696000 15952000 17238000 15622000 14877000 16141000 3 3 1 3 3 3 3 3 3 3 3 21507000 39867000 278880 44004000 26685000 21438000 23088000 26338000 24434000 24937000 29050000 20026000 37215000 2013800 44261000 25506000 23341000 23649000 26490000 24962000 24413000 27880000 6 6 3 6 6 6 6 6 6 6 6 10263000000 3740100000 6522600000 71 3228 66 243;244;245;246;247;248 301;302;303;304;305;306;307;308;309 305 9 AADFSDPAFLAHTNR Unmodified 1631.7692 0.76921879 29 CON__ENSEMBL:ENSBTAP00000018574 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 49.483 49.627 3 3.2468E-14 14649 20211116_3442_TMUAki_TMT10x_S_F4 142.67 119 + 6323400 11354000 4818.6 11760000 9232700 12225000 7974700 9018700 9582700 8678500 9490500 5887300 10596000 507680 11975000 8817400 12353000 8204700 9321200 9675100 8489900 9158000 3 3 1 3 3 3 3 3 3 3 3 3580600 6446800 0 6431000 6623800 9723900 5645300 4758700 5523300 4892300 5235300 3333600 6015500 294320 6611000 6323700 9591400 5773600 5092900 5614100 4772500 5059200 1 1 0 1 1 1 1 1 1 1 1 2742800 4907500 4818.6 5328800 2608900 2501300 2329500 4260000 4059400 3786200 4255200 2553700 4580800 213360 5364200 2493700 2762100 2431100 4228300 4061000 3717300 4098800 2 2 1 2 2 2 2 2 2 2 2 444600000 280740000 163860000 72 29 67 249;250;251;252 310;311;312;313;314 312 5 AADHLKPFLDDSTLR Unmodified 1697.8737 0.87368386 212 O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes yes 0 0 0 1 By MS/MS 6 0 1 1 49.641 49.791 4 9.8331E-05 13710 20211116_3445_TMUAki_TMT10x_S_F6 88.768 78.815 2531500 4374000 28169 4943900 2046500 2034600 1712900 3644600 4045500 3662300 3714000 2357300 4083500 229340 4959900 1955600 2288400 1827200 3624900 4001800 3576100 3593000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2531500 4374000 28169 4943900 2046500 2034600 1712900 3644600 4045500 3662300 3714000 2357300 4083500 229340 4959900 1955600 2288400 1827200 3624900 4001800 3576100 3593000 1 1 1 1 1 1 1 1 1 1 1 427930000 0 427930000 73 212 68 253 315 315 1 AADLNGDLTATREEFTAFLHPEEFEHMK Oxidation (M) 3234.4928 0.49279252 1787 Q15293;Q15293-2 RCN1 Reticulocalbin-1 yes no 0 0 1 1 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 76.567 76.528 5 0.00085985 24841 20211116_3428_TMUAki_TMT10x_P_F1 60.176 53.527 7031200 11351000 62080 9961500 7608400 12209000 8833300 6932000 7224200 7925100 8684000 6547100 10586000 639320 10294000 7329200 12181000 8846100 7344000 7471600 7699100 8331900 3 3 2 3 3 3 3 3 3 3 3 5170600 7968200 58190 7224000 4976900 9906500 6340200 5057800 5327500 5911800 6267700 4814700 7432400 470640 7462300 4809300 9817600 6328500 5412700 5497500 5738600 6017100 2 2 1 2 2 2 2 2 2 2 2 1860500 3382700 3889.4 2737500 2631500 2302900 2493100 1874200 1896700 2013300 2416200 1732400 3154000 168670 2831800 2519900 2363200 2517600 1931300 1974100 1960500 2314800 1 1 1 1 1 1 1 1 1 1 1 3251800000 2307700000 944130000 74 1787 69 254;255;256 316;317 316 2402 2 AADPPAENSSAPEAEQGGAE Unmodified 1896.7973 0.79734361 1410 P67809 YBX1 Nuclease-sensitive element-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 34.436 34.431 3 1.0553E-06 7727 20211116_3428_TMUAki_TMT10x_P_F1 87.668 76.814 465980 759830 6829.7 944500 827650 623790 480030 600960 613580 503870 724660 433930 709690 49960 945700 785260 654750 509220 609260 622310 496110 695610 4 4 3 4 4 4 4 4 4 4 4 199000 331040 1131.1 389290 627850 426100 259430 206300 217580 198820 304890 185300 309120 23455 393580 592810 426870 281110 220620 226280 194490 291420 2 2 1 2 2 2 2 2 2 2 2 266980 428790 5698.6 555200 199800 197700 220600 394660 396000 305050 419770 248630 400580 26505 552120 192450 227880 228110 388640 396030 301620 404200 2 2 2 2 2 2 2 2 2 2 2 105290000 77925000 27361000 75 1410 70 257;258 318;319;320;321 318 4 AADRLEQELLR Unmodified 1312.7099 0.709913 2012 Q6PK04 CCDC137 Coiled-coil domain-containing protein 137 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0 3 1 2 47.986 47.961 3 2.3915E-08 16269 20211116_3441_TMUAki_TMT10x_S_F3 124.21 88.496 898830 1648700 8475.1 1530700 2389400 2826900 1434200 1806500 1794600 1650100 1655000 836960 1537900 103290 1589200 2267600 2776900 1515900 1883500 1804900 1618000 1600900 1 1 1 1 1 1 1 1 1 1 1 898830 1648700 8475.1 1530700 2389400 2826900 1434200 1806500 1794600 1650100 1655000 836960 1537900 103290 1589200 2267600 2776900 1515900 1883500 1804900 1618000 1600900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 118460000 118460000 0 76 2012 71 259;260;261 322;323;324 324 3 AADSICDGDLVDSQIR Unmodified 1733.789 0.78902753 930 P35251;P35251-2 RFC1 Replication factor C subunit 1 yes no 0 0 0 0 By MS/MS 1 0 1 1 52.725 52.725 3 0.063995 15131 20211116_3428_TMUAki_TMT10x_P_F1 37.851 28.897 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 77 930 72 262 325 325 1 AADSQNSGEGNTGAAESSFSQEVSR Unmodified 2485.0589 0.05893104 641 P12270 TPR Nucleoprotein TPR yes yes 0 0 0 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 38.608 38.5 3 3.1267E-97 9272 20211116_3440_TMUAki_TMT10x_S_F2 286.72 273.53 821350 1232900 27177 2323100 1845900 1532900 887640 1652600 2222700 1121700 1722000 764930 1154500 104350 2281100 1747200 1613000 991810 1658300 2185100 1117400 1676700 7 7 4 7 7 7 7 7 7 7 7 317160 407970 24904 855620 1569100 1292300 667490 604660 796880 366230 624210 295490 382360 67039 847780 1483400 1274100 728210 642340 798900 367500 607500 2 2 2 2 2 2 2 2 2 2 2 504190 824910 2272.6 1467400 276750 240600 220160 1048000 1425900 755480 1097800 469440 772140 37310 1433300 263850 338930 263600 1016000 1386200 749890 1069200 5 5 2 5 5 5 5 5 5 5 5 663040000 442880000 220170000 78 641 73 263;264;265;266;267 326;327;328;329;330;331;332 331 7 AAEAAAAPAESAAPAAGEEPSKEEGEPK Unmodified 2635.2249 0.22493374 1437 P80723 BASP1 Brain acid soluble protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 3 1 39.072 38.916 4;5 2.5762E-25 11075 20211116_3429_TMUAki_TMT10x_P_F2 157.68 149 3891400 5827700 63982 8815900 18426000 10648000 5873300 5814400 8301400 4372900 7682600 3623300 5449100 533740 8810000 17353000 10626000 6689000 6112500 8317000 4330200 7430200 7 7 3 7 7 7 7 7 7 7 7 3282100 4975300 63982 7545500 18027000 10305000 5511400 4910700 7239900 3772000 6609900 3056200 4652100 498940 7557400 16972000 10206000 6298400 5231000 7267300 3730900 6395800 6 6 3 6 6 6 6 6 6 6 6 609230 852470 0 1270400 398970 343070 361840 903670 1061500 600880 1072700 567150 797010 34793 1252600 380780 419290 390630 881430 1049700 599330 1034400 1 1 0 1 1 1 1 1 1 1 1 811460000 767910000 43544000 79 1437 74 268;269;270;271 333;334;335;336;337;338;339 337 7 AAEAADLGLGAAVPVELRR Acetyl (Protein N-term) 1920.0429 0.042874453 3325 Q9Y5Q8;Q9Y5Q8-2;Q9Y5Q8-3 GTF3C5 General transcription factor 3C polypeptide 5 yes no 1 0 0 1 By MS/MS 3 0 2 2 72.774 72.46 2;3 4.8276E-41 26253 20211116_3441_TMUAki_TMT10x_S_F3 141.37 125.23 2439800 4457300 62011 3804100 3038400 2683500 3406300 2493800 2187400 2493600 3117500 2272200 4156700 268450 3910200 2926300 2798700 3398200 2545100 2311600 2435400 2978600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2439800 4457300 62011 3804100 3038400 2683500 3406300 2493800 2187400 2493600 3117500 2272200 4156700 268450 3910200 2926300 2798700 3398200 2545100 2311600 2435400 2978600 2 2 2 2 2 2 2 2 2 2 2 312960000 0 312960000 80 3325 75 272;273 340;341 340 2 AAEAAPPTQEAQGETEPTEQAPDALEQAADTSRR Unmodified 3535.6299 0.62989094 2181 Q8N163;Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 1.86 0.833 3 2 2 3 4 46.435 46.27 3;4 1.2505E-88 12492 20211116_3428_TMUAki_TMT10x_P_F1 241.77 221.51 3073200 4717600 20620 6229100 3650400 4112500 2379400 4194900 4262100 3822200 3900200 2861500 4407700 92762 6216300 3463000 4322000 2538300 4249800 4240700 3748300 3773500 9 9 3 9 7 9 9 9 9 9 9 1456700 2026600 0 3042700 3158800 3251200 1811600 2041500 1818700 1859900 1872400 1356200 1894900 12524 3035400 2994200 3272100 1908300 2131200 1851800 1823900 1804500 3 3 0 3 3 3 3 3 3 3 3 1616500 2691000 20620 3186400 491550 861340 567770 2153500 2443400 1962300 2027800 1505300 2512800 80238 3180800 468830 1049900 629990 2118600 2388900 1924400 1969000 6 6 3 6 4 6 6 6 6 6 6 4729700000 3074500000 1655200000 81 2181 76 274;275;276;277;278;279;280 342;343;344;345;346;347;348;349;350 342 9 AAEADGPLKR Acetyl (Protein N-term) 1068.5564 0.55637247 326 O75352;O75352-2 MPDU1 Mannose-P-dolichol utilization defect 1 protein yes no 1 0 0 1 By MS/MS 2 0 1 1 33.684 33.462 2 0.0071418 8880 20211116_3429_TMUAki_TMT10x_P_F2 58.981 40.175 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 82 326 77 281 351 351 1 AAEAEVELSAR Unmodified 1144.5724 0.57241646 2171 Q8IZ83;Q8IZ83-3 ALDH16A1 Aldehyde dehydrogenase family 16 member A1 yes no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 37.435 37.441 2 1.0201E-15 11096 20211116_3439_TMUAki_TMT10x_S_F1 204.52 161.44 698070 1165500 0 1288600 755820 631760 708060 911840 911440 782000 1023900 649930 1088000 53821 1296100 723200 690410 727000 909080 922320 769100 984270 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 698070 1165500 0 1288600 755820 631760 708060 911840 911440 782000 1023900 649930 1088000 53821 1296100 723200 690410 727000 909080 922320 769100 984270 2 2 0 2 2 2 2 2 2 2 2 38583000 0 38583000 83 2171 78 282;283;284 352;353;354 353 3 AAEAEVELSARR Unmodified 1300.6735 0.67352749 2171 Q8IZ83;Q8IZ83-3 ALDH16A1 Aldehyde dehydrogenase family 16 member A1 yes no 0 0 0 1 By matching By MS/MS 2 0 2 1 1 33.151 33.072 3 0.0028807 7476 20211116_3440_TMUAki_TMT10x_S_F2 69.229 46.35 63047 98313 4611.5 123280 70652 58180 70482 66004 67753 64514 84426 58738 91830 9631.3 123030 68020 63461 71417 66668 69638 63069 80927 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 63047 98313 4611.5 123280 70652 58180 70482 66004 67753 64514 84426 58738 91830 9631.3 123030 68020 63461 71417 66668 69638 63069 80927 1 1 1 1 1 1 1 1 1 1 1 23426000 20784000 2641900 84 2171 79 285;286 355 355 1 AAEAGGAEEQYGFLTTPTK Unmodified 1939.9163 0.91633654 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 0.943 3 6 4 2 6 9 58.795 58.793 2;3;4 2.6462E-68 17153 20211116_3444_TMUAki_TMT10x_S_F5 249.19 223.47 30795000 52057000 429280 57168000 45772000 61011000 38431000 40638000 41762000 36363000 41810000 28675000 48594000 3063200 58018000 43723000 61459000 39469000 42218000 42342000 35690000 40331000 12 12 9 12 12 12 12 12 12 12 12 22000000 36820000 277110 39241000 37943000 53666000 32000000 28684000 29480000 25611000 28873000 20486000 34366000 2205800 40077000 36243000 53220000 32692000 30333000 30079000 25140000 27872000 9 9 6 9 9 9 9 9 9 9 9 8794300 15238000 152170 17927000 7828700 7345300 6431200 11954000 12282000 10752000 12936000 8189500 14228000 857410 17940000 7480600 8239200 6777700 11886000 12262000 10550000 12459000 3 3 3 3 3 3 3 3 3 3 3 5725000000 3520400000 2204600000 85 1057 80 287;288;289;290;291;292;293;294;295;296;297;298;299;300;301 356;357;358;359;360;361;362;363;364;365;366;367;368;369;370 369 15 AAEAHVDAHYYEQNEQPTGTCAACITGDNR Unmodified 3348.416 0.41601553 1241 P55263;P55263-3;P55263-4;P55263-2 ADK Adenosine kinase yes no 0 0 0 0 By MS/MS By MS/MS 2.7 1.27 2 3 2 2 1 4 6 37.49 37.481 4 5.4914E-57 10424 20211116_3442_TMUAki_TMT10x_S_F4 205.12 200.84 2403400 4132800 24459 4541600 3770600 5240600 3499400 3140800 2993200 3028200 2891000 2237800 3857900 135170 4614700 3609000 5248500 3548100 3296000 3063600 2962200 2792000 12 12 3 12 12 12 12 12 12 12 12 1899600 3279700 15095 3582900 3306000 4808800 3120300 2477200 2300600 2405600 2188300 1768800 3061400 96622 3652000 3165800 4770900 3149400 2634200 2372400 2352400 2114400 6 6 1 6 6 6 6 6 6 6 6 503750 853170 9363.4 958710 464590 431740 379060 663630 692600 622630 702770 469030 796490 38545 962710 443210 477540 398670 661800 691240 609780 677620 6 6 2 6 6 6 6 6 6 6 6 2367200000 1457100000 910090000 86 1241 81 302;303;304;305;306;307;308;309;310;311 371;372;373;374;375;376;377;378;379;380;381;382 382 12 AAEAVAAAVGTGATTAAVMAAAGIAAIGPAK Oxidation (M) 2639.3953 0.39525072 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 1 0 By MS/MS By MS/MS 3 0.686 4 9 4 8 9 84.371 84.335 3;4 4.0786E-36 28441 20211116_3430_TMUAki_TMT10x_P_F3 176.53 157.74 32196000 55339000 527590 46631000 38627000 57109000 41552000 43983000 45236000 45708000 46632000 29981000 51605000 3152800 48343000 37136000 57238000 42109000 45433000 45908000 44569000 44941000 25 25 18 25 25 25 25 25 25 25 25 15060000 24632000 281080 20887000 14545000 33057000 17496000 19741000 20646000 21213000 20911000 14023000 22970000 1423700 21755000 14033000 32627000 17691000 20788000 20875000 20657000 20164000 12 12 8 12 12 12 12 12 12 12 12 17137000 30708000 246510 25744000 24081000 24052000 24056000 24242000 24591000 24494000 25721000 15958000 28635000 1729100 26588000 23104000 24611000 24419000 24645000 25033000 23912000 24777000 13 13 10 13 13 13 13 13 13 13 13 21966000000 12064000000 9901900000 87 1057 82 312;313;314;315;316;317;318;319;320;321;322;323;324;325;326;327;328 383;384;385;386;387;388;389;390;391;392;393;394;395;396;397;398;399;400;401;402;403;404;405 387 1367 23 AAEAVAAAVGTGATTAAVMAAAGIAAIGPAK Unmodified 2623.4003 0.4003361 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.25 0.924 3 4 4 1 5 7 83.191 83.195 3;4 4.0802E-57 27380 20211116_3445_TMUAki_TMT10x_S_F6 201.16 178.78 16046000 26070000 218790 25611000 18923000 16246000 18435000 9783800 9446000 12007000 18230000 14941000 24325000 1425200 26020000 18140000 16983000 18446000 10340000 10315000 11635000 17314000 17 17 10 17 17 17 17 17 17 17 17 4126100 6367300 58454 6698900 4013500 5705500 4489000 2735600 2498700 3222200 4520500 3841700 5942600 334740 6795700 3859900 5806900 4466900 2945900 2700900 3126900 4298100 5 5 3 5 5 5 5 5 5 5 5 11920000 19703000 160340 18912000 14910000 10541000 13946000 7048100 6947200 8785000 13709000 11100000 18382000 1090400 19224000 14280000 11176000 13979000 7394300 7613800 8508400 13015000 12 12 7 12 12 12 12 12 12 12 12 2681400000 1079700000 1601700000 88 1057 82 329;330;331;332;333;334;335;336;337;338;339;340 406;407;408;409;410;411;412;413;414;415;416;417;418;419;420;421;422;423 421 18 AAECNIVVTQPR Unmodified 1356.682 0.68198369 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 By MS/MS By MS/MS 3.82 1.11 2 2 3 4 6 5 36.398 36.357 2;3 4.172E-15 7976 20211116_3444_TMUAki_TMT10x_S_F5 188.96 154.15 9107900 14442000 35071 15110000 15463000 13684000 10341000 10045000 11625000 9273400 12609000 8480400 13478000 848350 15347000 14698000 13946000 10797000 10374000 11805000 9088700 12133000 12 12 7 12 12 12 12 12 12 12 12 4859600 7597500 7245.2 7824300 11154000 9818800 5567300 5455900 6357800 4840000 6604800 4524700 7090100 477810 7995900 10554000 9781700 5963700 5748900 6442200 4752400 6363700 5 5 3 5 5 5 5 5 5 5 5 4248300 6844500 27826 7286100 4308200 3865000 4773800 4589200 5267200 4433400 6004600 3955700 6388300 370540 7350700 4143800 4164700 4833200 4624700 5363000 4336300 5769600 7 7 4 7 7 7 7 7 7 7 7 1194300000 920450000 273810000 89 1546 83 341;342;343;344;345;346;347;348;349;350;351 424;425;426;427;428;429;430;431;432;433;434;435;436;437 433 14 AAEDDEDDDVDTK Unmodified 1436.5427 0.54269205 516 P06454;P06454-2 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 4 2 2 33.421 33.426 2;3 1.3036E-43 9302 20211116_3439_TMUAki_TMT10x_S_F1 277.96 262.07 865710 1380000 0 1058900 1110800 1411300 974010 737360 842960 619030 1041000 806030 1286500 71328 1108200 1061400 1400800 991080 780160 870330 609450 998090 3 3 0 3 3 3 3 3 3 3 3 225430 345930 0 334530 443920 434210 268650 231350 266870 188170 296050 209890 322750 20503 343570 421160 431640 281610 244160 272610 185550 284690 1 1 0 1 1 1 1 1 1 1 1 640280 1034100 0 724340 666870 977050 705360 506010 576090 430860 744960 596140 963730 50825 764600 640220 969180 709460 536000 597730 423900 713410 2 2 0 2 2 2 2 2 2 2 2 56111000 18526000 37585000 90 516 84 352;353;354;355 438;439;440 440 3 AAEDDEDDDVDTKK Unmodified 1564.6377 0.63765507 516 P06454;P06454-2 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 33.185 33.114 3 1.6763E-29 9196 20211116_3439_TMUAki_TMT10x_S_F1 205.3 187.81 1816000 2684800 0 1589900 1685400 3043100 1649000 1523900 1381900 1208600 1954100 1690800 2501100 146000 1721000 1615000 2976300 1666300 1616600 1437800 1193400 1867300 2 2 0 2 2 2 2 2 2 2 2 1284900 1809700 0 1088400 1056100 1952600 1026300 1035100 936760 812820 1310400 1196400 1685900 102330 1174200 1011800 1915300 1039800 1092100 970170 803000 1252500 1 1 0 1 1 1 1 1 1 1 1 531050 875060 0 501510 629350 1090500 622650 488810 445130 395800 643740 494450 815120 43677 546820 603170 1061100 626430 524570 467660 390390 614840 1 1 0 1 1 1 1 1 1 1 1 126220000 93650000 32569000 91 516 85 356;357;358 441;442 442 2 AAEEAFVNDIDESSPGTEWER Unmodified 2351.019 0.018963706 580 P09496-2;P09496-5 CLTA Clathrin light chain A yes no 0 0 0 0 By MS/MS By MS/MS 1.2 0.4 4 1 2 3 70.555 70.477 2;3 5.9634E-76 22343 20211116_3428_TMUAki_TMT10x_P_F1 271.43 260.49 24044000 39755000 321720 40689000 28241000 33654000 30675000 17989000 16218000 19661000 27605000 22389000 37099000 2285600 41339000 27156000 34366000 30540000 19130000 17536000 19133000 26277000 8 8 6 8 8 8 8 8 8 8 8 16080000 26704000 192680 26621000 17965000 26342000 21152000 11360000 10222000 12773000 17841000 14973000 24917000 1484800 27160000 17313000 26516000 20950000 12348000 11148000 12416000 16975000 5 5 4 5 5 5 5 5 5 5 5 7963500 13051000 129040 14068000 10277000 7312300 9523000 6628500 5996200 6888200 9764100 7415700 12182000 800790 14179000 9842000 7850600 9589800 6781700 6388100 6716700 9302500 3 3 2 3 3 3 3 3 3 3 3 7145500000 3592700000 3552800000 92 580 86 359;360;361;362;363 443;444;445;446;447;448;449;450;451 447 9 AAEEEDEADPKR Unmodified 1358.595 0.5950024 750 P20962 PTMS Parathymosin yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 28.795 28.795 3 9.7027E-05 5529 20211116_3428_TMUAki_TMT10x_P_F1 96.745 80.491 41361 69297 1752.1 56932 78950 166890 62002 150570 90536 81556 88852 38524 64615 5588.4 60598 75381 162870 64661 151840 90796 82495 85765 1 1 1 1 1 1 1 1 1 1 1 41361 69297 1752.1 56932 78950 166890 62002 150570 90536 81556 88852 38524 64615 5588.4 60598 75381 162870 64661 151840 90796 82495 85765 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5857700 5857700 0 93 750 87 364;365 452;453 452 2 AAEEIGIK Unmodified 829.45453 0.45453316 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 42.174 41.859 2 0.0019713 12411 20211116_3430_TMUAki_TMT10x_P_F3 117.1 61.087 1343500 2171200 13010 2388900 1422400 1086400 1461500 1385000 1508100 1380100 1858000 1251000 2026800 124610 2402200 1365700 1193800 1481900 1393000 1544600 1348100 1781500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1343500 2171200 13010 2388900 1422400 1086400 1461500 1385000 1508100 1380100 1858000 1251000 2026800 124610 2402200 1365700 1193800 1481900 1393000 1544600 1348100 1781500 1 1 1 1 1 1 1 1 1 1 1 28662000 0 28662000 94 629 88 366;367 454;455 454 2 AAEEPSKVEEK Unmodified 1215.5983 0.59829686 857 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate yes yes 0 0 0 1 By MS/MS 3 0 1 1 32.176 31.931 3 1.0372E-05 9793 20211116_3441_TMUAki_TMT10x_S_F3 111.31 80.921 1369400 2278700 4641.4 1736400 1323900 1442900 1451800 753750 893620 789110 1348600 1275100 2124300 117220 1805400 1273000 1472500 1448600 802200 949670 769230 1286800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1369400 2278700 4641.4 1736400 1323900 1442900 1451800 753750 893620 789110 1348600 1275100 2124300 117220 1805400 1273000 1472500 1448600 802200 949670 769230 1286800 2 2 2 2 2 2 2 2 2 2 2 49614000 0 49614000 95 857 89 368 456;457 456 2 AAEIHSRPQSSRPVLLSK Acetyl (Protein N-term) 2017.1069 0.10687169 2143 Q8IWB7 WDFY1 WD repeat and FYVE domain-containing protein 1 yes yes 1 0 0 2 By MS/MS 1 0 1 1 34.858 34.858 4 1.0836E-17 7918 20211116_3428_TMUAki_TMT10x_P_F1 126.88 109.67 833280 1406400 19757 1836800 2225500 2276500 1162500 1185400 1288400 964820 1185600 776020 1313900 107000 1850000 2108400 2267600 1238700 1253700 1301500 951380 1146900 2 2 2 2 2 2 2 2 2 2 2 833280 1406400 19757 1836800 2225500 2276500 1162500 1185400 1288400 964820 1185600 776020 1313900 107000 1850000 2108400 2267600 1238700 1253700 1301500 951380 1146900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 179820000 179820000 0 96 2143 90 369 458;459 459 2 AAEIYGVTHTR Unmodified 1216.62 0.62003536 2871 Q9HCS7 XAB2 Pre-mRNA-splicing factor SYF1 yes yes 0 0 0 0 By MS/MS 5 0 1 1 33.126 33.303 3 0.0072835 6806 20211116_3444_TMUAki_TMT10x_S_F5 61.194 49.328 235210 411120 10560 399380 245620 213080 288560 233820 252100 233940 322150 219080 383580 29488 405480 237230 229030 289330 236690 260550 228470 308600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 235210 411120 10560 399380 245620 213080 288560 233820 252100 233940 322150 219080 383580 29488 405480 237230 229030 289330 236690 260550 228470 308600 1 1 1 1 1 1 1 1 1 1 1 10457000 0 10457000 97 2871 91 370 460 460 1 AAELEMELNEHSLVIDTLK Oxidation (M) 2170.0827 0.082749937 3123 Q9UHV9 PFDN2 Prefoldin subunit 2 yes yes 0 0 1 0 By MS/MS By MS/MS 2.17 1.07 2 2 1 1 3 3 74.674 74.588 3;4 4.2163E-24 23923 20211116_3428_TMUAki_TMT10x_P_F1 171.98 151.33 13991000 24312000 133290 20095000 14194000 23466000 15102000 14622000 17307000 17217000 17702000 13028000 22670000 1217000 20849000 13636000 23499000 15340000 15390000 17525000 16708000 17064000 5 5 3 5 5 5 5 5 5 5 5 9985800 16197000 34442 13609000 8643500 17798000 9239500 9192500 10988000 10962000 11753000 9297400 15104000 771200 14129000 8300300 17679000 9395000 9833500 11129000 10633000 11314000 3 3 1 3 3 3 3 3 3 3 3 4005500 8114800 98846 6485800 5550300 5668500 5862700 5429200 6318900 6255100 5948600 3730300 7565900 445840 6719400 5335700 5819700 5944600 5556900 6395300 6075000 5749800 2 2 2 2 2 2 2 2 2 2 2 4251000000 2721300000 1529700000 98 3123 92 371;372;373;374;375;376 461;462;463;464;465 463 3144 5 AAELEMELNEHSLVIDTLKEVDETRK Oxidation (M) 3027.507 0.5070456 3123 Q9UHV9 PFDN2 Prefoldin subunit 2 yes yes 0 0 1 2 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 74.492 74.394 5 4.5133E-30 25462 20211116_3429_TMUAki_TMT10x_P_F2 162.03 150.29 26326000 53180000 581730 35245000 39341000 70681000 42225000 73023000 65999000 64327000 50970000 24515000 49556000 2708300 37752000 37817000 69872000 43416000 73866000 65569000 63183000 49634000 12 12 8 12 12 12 12 12 12 12 12 10808000 22260000 365190 13128000 12773000 41661000 19167000 35429000 32172000 30229000 22541000 10065000 20737000 1173800 14464000 12425000 40541000 19510000 36181000 31819000 29737000 22042000 5 5 4 5 5 5 5 5 5 5 5 15519000 30920000 216540 22118000 26568000 29020000 23058000 37594000 33826000 34098000 28429000 14450000 28819000 1534500 23289000 25392000 29330000 23905000 37686000 33750000 33446000 27592000 7 7 4 7 7 7 7 7 7 7 7 4084500000 1803400000 2281200000 99 3123 93 377;378;379;380;381 466;467;468;469;470;471;472;473;474;475;476;477 468 3144 12 AAELETDIR Unmodified 1016.5138 0.51383895 395 O94906;O94906-2 PRPF6 Pre-mRNA-processing factor 6 yes no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 39.478 39.46 2 0.00033944 11791 20211116_3439_TMUAki_TMT10x_S_F1 127.68 53.552 4309700 6701900 78306 7734000 5289100 4701500 4236900 4991900 4957600 4178800 5786500 4013300 6257500 434850 7771700 5049200 4983200 4375000 5036400 5041400 4114700 5556400 5 5 4 5 5 5 5 5 5 5 5 1042700 1577600 0 1765200 2188700 2009600 1337500 1185200 1178600 1024000 1400000 970780 1472800 93344 1791200 2076600 2013600 1396300 1241800 1213800 1006800 1343700 1 1 0 1 1 1 1 1 1 1 1 3267000 5124300 78306 5968700 3100500 2691900 2899300 3806700 3779000 3154800 4386500 3042500 4784700 341500 5980500 2972600 2969500 2978700 3794600 3827600 3108000 4212700 4 4 4 4 4 4 4 4 4 4 4 185710000 103760000 81950000 100 395 94 382;383;384 478;479;480;481;482 480 5 AAELIANSLATAGDGLIELR Unmodified 1997.0793 0.079319539 924 P35232 PHB Prohibitin yes yes 0 0 0 0 By MS/MS By MS/MS 5.04 1.9 1 2 2 4 5 3 5 2 13 11 78.166 78.17 2;3 8.1142E-134 27028 20211116_3431_TMUAki_TMT10x_P_F4 376.6 337.97 38932000 60698000 298360 58381000 41866000 52843000 48077000 32356000 32506000 35919000 44497000 36250000 56629000 2321300 59639000 40301000 53714000 47960000 34038000 34176000 34933000 42553000 27 27 9 27 27 27 27 27 27 27 27 21167000 33876000 251740 32929000 19782000 34734000 25056000 18585000 18257000 19902000 25418000 19710000 31606000 1386000 33687000 19108000 34910000 24929000 19751000 19125000 19383000 24298000 15 15 5 15 15 15 15 15 15 15 15 17765000 26822000 46620 25452000 22084000 18109000 23021000 13771000 14249000 16017000 19079000 16540000 25022000 935280 25952000 21192000 18804000 23030000 14288000 15051000 15550000 18255000 12 12 4 12 12 12 12 12 12 12 12 35898000000 19319000000 16579000000 101 924 95 385;386;387;388;389;390;391;392;393;394;395;396;397;398;399;400;401;402;403;404;405;406;407;408 483;484;485;486;487;488;489;490;491;492;493;494;495;496;497;498;499;500;501;502;503;504;505;506;507;508;509;510 486 28 AAELLAR Unmodified 742.43374 0.43373813 1224 P54707;P54707-2 ATP12A Potassium-transporting ATPase alpha chain 2 yes no 0 0 0 0 By MS/MS By MS/MS 4 0.632 1 3 1 1 4 35.668 35.843 2 0.010369 8859 20211116_3431_TMUAki_TMT10x_P_F4 97.602 0 613360 1004200 7170.9 971490 669160 566400 683810 750650 778300 616590 933570 571150 936920 58316 987330 642430 606140 695780 749900 793160 607710 895770 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 613360 1004200 7170.9 971490 669160 566400 683810 750650 778300 616590 933570 571150 936920 58316 987330 642430 606140 695780 749900 793160 607710 895770 1 1 1 1 1 1 1 1 1 1 1 14138000 0 14138000 102 1224 96 409;410;411;412;413 511;512;513;514;515 511 5 AAELTATQVEEEEEEEDFRK Unmodified 2352.0605 0.06049417 355 O75717;O75717-2 WDHD1 WD repeat and HMG-box DNA-binding protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 53.477 53.332 3 3.5749E-59 15367 20211116_3428_TMUAki_TMT10x_P_F1 253.48 234.45 5146000 8315800 107950 9384900 8158800 11368000 6800800 7385400 7873100 6352700 7230000 4792200 7763500 569440 9528300 7795400 11369000 7002600 7679100 7939800 6246900 6994500 3 3 3 3 3 3 3 3 3 3 3 3923900 6188800 76445 6940800 7210600 10407000 6228900 5514200 5941500 4716800 5284000 3654100 5777600 442600 7079500 6893800 10278000 6360700 5829500 6033700 4639500 5117700 2 2 2 2 2 2 2 2 2 2 2 1222100 2127000 31509 2444100 948200 961600 571900 1871200 1931600 1635900 1946000 1138100 1985900 126850 2448800 901630 1091500 641870 1849600 1906100 1607400 1876800 1 1 1 1 1 1 1 1 1 1 1 528320000 293930000 234390000 103 355 97 414;415 516;517;518 516 3 AAESLADPTEYENLFPGLK Unmodified 2064.0052 0.0051515425 936 P35606;P35606-2 COPB2 Coatomer subunit beta' yes no 0 0 0 0 By MS/MS 6 0 1 1 79.077 79.069 3 0.001706 25721 20211116_3445_TMUAki_TMT10x_S_F6 63.827 41.294 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 104 936 98 416 519 519 1 AAEVLNK Unmodified 743.41775 0.41775372 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS 4 0 2 2 33.967 34.046 2 0.0075351 8688 20211116_3442_TMUAki_TMT10x_S_F4 131.04 71.832 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 105 1171 99 417;418 520;521 521 2 AAFDDAIAELDTLSEESYK Unmodified 2086.9583 0.95826093 1342 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 0 0 By MS/MS By MS/MS 2.13 1.16 13 15 7 2 1 1 14 25 58.704 58.682 2;3;4 2.0636E-133 28276 20211116_3429_TMUAki_TMT10x_P_F2 383.06 361.3 387920000 545320000 1184700 780480000 245710000 379900000 341510000 177830000 185960000 213000000 361150000 361170000 509720000 27287000 773620000 237870000 407180000 336300000 192060000 202200000 206570000 342970000 37 37 13 37 36 37 36 37 37 37 37 284490000 389240000 616660 560480000 161380000 295020000 203680000 126360000 130600000 146960000 253760000 264870000 363850000 19665000 555720000 155710000 313130000 201840000 137600000 140430000 142680000 240980000 12 12 3 12 11 12 11 12 12 12 12 103430000 156080000 568020 219990000 84329000 84874000 137830000 51470000 55356000 66041000 107400000 96298000 145880000 7622100 217900000 82160000 94048000 134460000 54453000 61771000 63899000 101990000 25 25 10 25 25 25 25 25 25 25 25 90485000000 54307000000 36178000000 106 1342 100 419;420;421;422;423;424;425;426;427;428;429;430;431;432;433;434;435;436;437;438;439;440;441;442;443;444;445;446;447;448;449;450;451;452;453;454;455;456;457 522;523;524;525;526;527;528;529;530;531;532;533;534;535;536;537;538;539;540;541;542;543;544;545;546;547;548;549;550;551;552;553;554;555;556;557;558;559;560;561;562;563;564;565;566;567;568;569;570;571 532 50 AAFGEEVDAVDTGISR Unmodified 1635.774 0.77402939 79 O00273;O00273-2 DFFA DNA fragmentation factor subunit alpha yes no 0 0 0 0 By MS/MS By MS/MS 2 0.866 3 2 3 4 4 57.603 57.377 2;3 2.2524E-52 17072 20211116_3428_TMUAki_TMT10x_P_F1 266.28 237.88 21998000 35205000 249630 38488000 29347000 37395000 26204000 22104000 22351000 21897000 26434000 20483000 32862000 2086300 39016000 28071000 37820000 26625000 23239000 23052000 21394000 25374000 6 6 4 6 6 6 6 6 6 6 6 17311000 27014000 186570 30307000 23424000 32578000 21568000 15572000 15995000 16159000 20062000 16119000 25219000 1621700 30719000 22420000 32666000 21802000 16708000 16660000 15757000 19227000 4 4 2 4 4 4 4 4 4 4 4 4686800 8191500 63055 8181300 5923900 4817300 4635300 6532000 6356200 5738200 6371900 4364300 7643500 464660 8296700 5651500 5153600 4822500 6531000 6391600 5636900 6146300 2 2 2 2 2 2 2 2 2 2 2 2195000000 1310900000 884160000 107 79 101 458;459;460;461;462;463;464;465 572;573;574;575;576;577;578;579 573 8 AAFGISDSYVDGSSFDPQRR Unmodified 2174.0029 0.0028601316 3216 Q9UQ35;Q9UQ35-2;Q9UQ35-3 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 58.213 58.318 3 4.8353E-09 16843 20211116_3434_TMUAki_TMT10x_P_F6 112.3 103.04 28424000 51450000 78178 45462000 40000000 58918000 36988000 44340000 43287000 41207000 42430000 26465000 47986000 2470500 47003000 38275000 58864000 37871000 45723000 43731000 40374000 40957000 8 8 3 8 8 8 8 8 8 8 8 18417000 32884000 65490 29160000 28803000 47888000 27558000 29778000 27862000 26671000 28232000 17148000 30671000 1663300 30291000 27585000 47223000 28028000 31097000 28345000 26176000 27223000 5 5 2 5 5 5 5 5 5 5 5 10007000 18566000 12688 16302000 11197000 11030000 9430500 14562000 15425000 14536000 14198000 9317400 17315000 807170 16712000 10689000 11642000 9843700 14626000 15386000 14198000 13734000 3 3 1 3 3 3 3 3 3 3 3 4899500000 2413100000 2486500000 108 3216 102 466;467;468;469 580;581;582;583;584;585;586;587 583 8 AAFGLSEAGFNTACVTK Unmodified 1742.8298 0.82977013 882 P31040;P31040-3;P31040-2 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 7.6 0.49 2 3 2 3 65.55 65.716 2;3 1.5837E-52 20514 20211116_3436_TMUAki_TMT10x_P_F8 260.81 232.61 20135000 34405000 265630 34466000 23077000 23262000 21290000 16790000 14578000 17416000 23478000 18749000 32104000 1955200 34989000 22098000 24243000 21481000 17417000 15440000 16983000 22373000 5 5 4 5 5 5 5 5 5 5 5 6042200 9874600 92627 10008000 6612600 9942900 7070100 5520100 4376900 5437300 6847400 5626500 9214500 592380 10200000 6357400 10034000 7064200 5833200 4658300 5313800 6529000 2 2 1 2 2 2 2 2 2 2 2 14092000 24530000 173000 24457000 16464000 13319000 14220000 11270000 10201000 11978000 16631000 13123000 22889000 1362800 24789000 15741000 14210000 14417000 11583000 10782000 11669000 15844000 3 3 3 3 3 3 3 3 3 3 3 2441000000 1292700000 1148300000 109 882 103 470;471;472;473;474 588;589;590;591;592;593 588 6 AAFNSGK Unmodified 693.34459 0.34458878 489 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 31.541 31.57 2 0.0096673 7764 20211116_3433_TMUAki_TMT10x_P_F5 98.997 62.022 3507800 5427500 0 4296900 3458600 5006700 3444100 2012600 2214400 2349800 3597900 3266000 5060200 276430 4474000 3315000 4989400 3456200 2207500 2355700 2281100 3427900 3 3 0 3 3 3 3 3 3 3 3 3282200 5048200 0 4003700 3274000 4767500 3162800 1887600 2062000 2185800 3343600 3056000 4706600 260870 4169700 3135700 4745000 3179900 2073400 2191400 2122500 3185800 1 1 0 1 1 1 1 1 1 1 1 225640 379370 0 293130 184610 239130 281250 125010 152390 164060 254260 210070 353670 15559 304330 179270 244370 276240 134020 164280 158620 242120 2 2 0 2 2 2 2 2 2 2 2 97976000 91783000 6193100 110 489 104 475;476 594;595;596 594 3 AAFTAFEEAQLPR Unmodified 1449.7252 0.72522871 2427 Q96CT7 CCDC124 Coiled-coil domain-containing protein 124 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.775 3 4 3 5 5 65.156 65.193 2;3 3.7849E-25 19745 20211116_3444_TMUAki_TMT10x_S_F5 224.58 194.32 29913000 49599000 367470 49187000 34014000 46316000 34436000 29988000 28944000 30301000 36876000 27854000 46279000 2778900 50165000 32640000 46994000 34738000 31323000 29967000 29581000 35327000 11 11 9 11 11 11 11 11 11 11 11 20117000 32204000 240410 32343000 21887000 36253000 24131000 19865000 19333000 19544000 24013000 18732000 30050000 1815600 33044000 21051000 36323000 24212000 21015000 20044000 19101000 23019000 7 7 5 7 7 7 7 7 7 7 7 9796500 17395000 127060 16844000 12127000 10063000 10305000 10123000 9610800 10757000 12863000 9122500 16229000 963250 17121000 11590000 10671000 10527000 10308000 9923200 10480000 12308000 4 4 4 4 4 4 4 4 4 4 4 4442100000 2152000000 2290100000 111 2427 105 477;478;479;480;481;482;483;484;485;486 597;598;599;600;601;602;603;604;605;606;607;608 605 12 AAFTVSLDPGPLEQFPHSMEPQLR Oxidation (M) 2682.3112 0.31118674 3154 Q9UKD2 MRTO4 mRNA turnover protein 4 homolog yes yes 0 0 1 0 By MS/MS 6.5 0.5 1 1 2 71.585 71.662 3 3.1652E-05 22703 20211116_3445_TMUAki_TMT10x_S_F6 67.76 55.868 1324400 2694200 59820 2135500 2442100 2750700 2224000 4095700 4464500 3973700 2910800 1233600 2511900 181210 2227200 2339700 2794500 2336700 4092700 4388700 3885900 2856100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1324400 2694200 59820 2135500 2442100 2750700 2224000 4095700 4464500 3973700 2910800 1233600 2511900 181210 2227200 2339700 2794500 2336700 4092700 4388700 3885900 2856100 1 1 1 1 1 1 1 1 1 1 1 1102200000 0 1102200000 112 3154 106 487;488 609 609 3166 1 AAFVLPEFAR Unmodified 1119.6077 0.60767975 735 P19623 SRM Spermidine synthase yes yes 0 0 0 0 By MS/MS By MS/MS 5.43 2.87 2 1 2 2 3 4 68.897 68.966 2 2.1573E-08 21291 20211116_3447_TMUAki_TMT10x_S_F8 169.09 70.633 48835000 80156000 165180 75949000 56681000 67463000 53346000 55000000 49313000 53838000 58308000 45470000 74779000 4170200 77651000 54266000 68970000 54160000 56514000 50663000 52629000 55970000 7 7 3 7 7 7 7 7 7 7 7 22210000 35833000 134880 34121000 23800000 41962000 25758000 24959000 22295000 24696000 26580000 20680000 33429000 1979800 35047000 22877000 41883000 25918000 26227000 22985000 24130000 25508000 3 3 2 3 3 3 3 3 3 3 3 26625000 44323000 30305 41828000 32882000 25501000 27588000 30041000 27017000 29142000 31729000 24790000 41349000 2190400 42604000 31389000 27088000 28242000 30287000 27678000 28499000 30462000 4 4 1 4 4 4 4 4 4 4 4 5966100000 3205000000 2761100000 113 735 107 489;490;491;492;493;494;495 610;611;612;613;614;615;616 616 7 AAGAGAAK Unmodified 615.33402 0.33402409 693 P16401 HIST1H1B Histone H1.5 yes yes 0 0 0 0 By MS/MS 5 0 1 1 26.437 26.363 2 0.0073567 5275 20211116_3433_TMUAki_TMT10x_P_F5 89.673 32.21 128050 201890 1885.5 136490 125640 204590 133880 130190 119770 108480 127750 119240 188140 12340 144880 120790 202550 134940 135470 122750 106840 122990 1 1 1 1 1 1 1 1 1 1 1 128050 201890 1885.5 136490 125640 204590 133880 130190 119770 108480 127750 119240 188140 12340 144880 120790 202550 134940 135470 122750 106840 122990 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1241500 1241500 0 114 693 108 496 617 617 1 AAGEVLEPANLLAEEKDEDLLFE Unmodified 2514.2377 0.23773025 3321 Q9Y5K8 ATP6V1D V-type proton ATPase subunit D yes yes 0 0 0 1 By MS/MS By matching 1 0 2 1 1 79.972 79.954 3 0.0088199 26288 20211116_3428_TMUAki_TMT10x_P_F1 44.105 35.504 2367600 4493300 0 4274900 2334000 4226400 2548000 1966200 1629100 2644100 3122900 2204300 4191900 176110 4375800 2242000 4257800 2544900 2133400 1750600 2554400 2966300 1 1 0 1 1 1 1 1 1 1 1 2367600 4493300 0 4274900 2334000 4226400 2548000 1966200 1629100 2644100 3122900 2204300 4191900 176110 4375800 2242000 4257800 2544900 2133400 1750600 2554400 2966300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1374200000 1027300000 346890000 115 3321 109 497;498 618 618 1 AAGFERPSPVQLK Unmodified 1398.7619 0.76194857 3120 Q9UHI6;Q9UHI6-2 DDX20 Probable ATP-dependent RNA helicase DDX20 yes no 0 0 0 1 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 43.165 43.161 3 2.7683E-12 10814 20211116_3447_TMUAki_TMT10x_S_F8 157.56 128.83 3664900 5754900 97801 7329900 5882400 5529100 2967000 5550500 6126500 4592600 5852200 3413100 5375800 426050 7339500 5572900 5744300 3259800 5613600 6084700 4524900 5653900 3 3 3 3 3 3 3 3 3 3 3 1414400 2263500 40163 2794500 4122900 3878400 1382100 2172300 2470000 1915600 2335200 1317200 2114100 192630 2829600 3886700 3845900 1578900 2287100 2460400 1881400 2256800 1 1 1 1 1 1 1 1 1 1 1 2250600 3491400 57638 4535400 1759500 1650700 1584800 3378200 3656500 2677100 3517100 2095900 3261700 233430 4510000 1686200 1898400 1680800 3326500 3624200 2643500 3397100 2 2 2 2 2 2 2 2 2 2 2 317190000 189160000 128030000 116 3120 110 499;500;501 619;620;621 621 3 AAGFKDPLLASGTDGVGTK Unmodified 1803.9367 0.93667805 766 P22102 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes yes 0 0 0 1 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 56.419 57.048 3 1.4879E-17 18107 20211116_3435_TMUAki_TMT10x_P_F7 147.9 130.41 14814000 24967000 190970 28021000 20115000 24769000 14587000 21929000 22966000 20014000 21209000 13795000 23308000 1480400 28321000 19160000 25370000 15345000 22382000 22935000 19626000 20514000 2 2 2 2 2 2 2 2 2 2 2 6530200 11814000 63590 12477000 14641000 18893000 10644000 10108000 10455000 9019300 9374900 6080700 11026000 714260 12778000 13942000 18654000 11000000 10688000 10606000 8853600 9077100 1 1 1 1 1 1 1 1 1 1 1 8284300 13153000 127380 15543000 5473400 5876100 3943300 11821000 12511000 10995000 11834000 7714400 12282000 766170 15543000 5217400 6716100 4345100 11694000 12329000 10772000 11437000 1 1 1 1 1 1 1 1 1 1 1 2787700000 1606500000 1181300000 117 766 111 502;503;504 622;623;624 622 3 AAGGATPK Unmodified 671.36024 0.36023884 695 P16403 HIST1H1C Histone H1.2 yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 26.596 26.588 2 0.0066819 4537 20211116_3431_TMUAki_TMT10x_P_F4 91.626 12.158 373810 560870 11129 466840 318930 540560 318000 249190 240830 271340 371840 348130 523000 40594 484000 306450 539590 320220 268720 253030 264090 354640 3 3 3 3 3 3 3 3 3 3 3 373810 560870 11129 466840 318930 540560 318000 249190 240830 271340 371840 348130 523000 40594 484000 306450 539590 320220 268720 253030 264090 354640 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6311600 6311600 0 118 695 112 505;506 625;626;627 625 3 AAGHEPHLLAR Unmodified 1170.6258 0.62578944 2499 Q96IR7 HPDL 4-hydroxyphenylpyruvate dioxygenase-like protein yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 27.992 27.98 3 7.8215E-06 5424 20211116_3431_TMUAki_TMT10x_P_F4 110.39 90.601 127860 184400 0 157370 154540 199430 109550 110820 117360 113430 161230 119050 171970 10374 163080 147010 198580 113720 117220 120610 110670 154180 1 1 0 1 1 1 1 1 1 1 1 127860 184400 0 157370 154540 199430 109550 110820 117360 113430 161230 119050 171970 10374 163080 147010 198580 113720 117220 120610 110670 154180 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8856800 8856800 0 119 2499 113 507;508 628 628 1 AAGLALK Unmodified 642.40646 0.40646075 3410 yes yes 0 0 0 0 By MS/MS By MS/MS 6.75 0.829 4 2 2 3 5 39.083 39.354 2 0.0050816 11207 20211116_3435_TMUAki_TMT10x_P_F7 110.24 56.773 + 8714500 14503000 4975.3 13894000 14963000 15209000 10602000 9737500 10232000 8689500 11435000 8113600 13531000 749730 14237000 14234000 15290000 10970000 10145000 10468000 8529800 10994000 10 10 1 10 10 10 10 10 10 10 10 5710100 9435400 0 8877300 11834000 12520000 7265300 6609200 6972600 5758200 7577900 5316400 8802100 516220 9150200 11230000 12397000 7599300 6992600 7127700 5658800 7291400 5 5 0 5 5 5 5 5 5 5 5 3004400 5068000 4975.3 5016500 3129000 2689200 3336400 3128400 3259000 2931300 3856900 2797300 4728800 233520 5086500 3004400 2893000 3371000 3152600 3340100 2871000 3702100 5 5 1 5 5 5 5 5 5 5 5 309630000 96050000 213580000 120 3410 114 509;510;511;512;513;514;515;516 629;630;631;632;633;634 631 6 AAGLATMISTMRPDIDNMDEYVR 3 Oxidation (M) 2617.1822 0.18222276 345 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 3 1 By MS/MS 5 0 1 1 51.281 51.467 3 0.00046856 14106 20211116_3444_TMUAki_TMT10x_S_F5 61.959 55.494 1685500 2997600 7506.4 2449900 1676600 2616100 1591000 5921400 6915200 5397800 3714900 1569300 2795000 130050 2540500 1604800 2729200 1783100 5838000 6688400 5293400 3682700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1685500 2997600 7506.4 2449900 1676600 2616100 1591000 5921400 6915200 5397800 3714900 1569300 2795000 130050 2540500 1604800 2729200 1783100 5838000 6688400 5293400 3682700 2 2 1 2 2 2 2 2 2 2 2 714370000 0 714370000 121 345 115 517 635;636 636 249;250;251 2 AAGLATMISTMRPDIDNMDEYVR Oxidation (M) 2585.1924 0.19239352 345 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 1 1 By MS/MS 6 0 1 1 68.925 68.848 3 0.0057365 21581 20211116_3445_TMUAki_TMT10x_S_F6 49.106 39.576 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 122 345 115 518 637 637 249;250;251 1 AAGLVSDLDADSGLTLSR Unmodified 1759.8952 0.89520716 2705 Q9BW92;Q9BW92-2 TARS2 Threonine--tRNA ligase, mitochondrial yes no 0 0 0 0 By MS/MS 4 0 1 1 69.981 69.804 3 1.148E-10 22983 20211116_3442_TMUAki_TMT10x_S_F4 119.68 104.99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 123 2705 116 519 638 638 1 AAGNPGSLAAPIDHKPCSAPLEPK Unmodified 2397.2111 0.21107877 1720 Q14676;Q14676-2;Q14676-3 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 45.651 45.94 4 5.9994E-29 11807 20211116_3434_TMUAki_TMT10x_P_F6 161.53 148.21 1407200 2413800 16432 3017700 2604400 2652900 1524700 2724000 2546400 2255000 2412800 1310300 2254600 139420 3030400 2470500 2726700 1634700 2752000 2541100 2221700 2331700 2 2 1 2 2 2 2 2 2 2 2 731650 1287500 16432 1602800 2113700 2230100 1162100 1501400 1386700 1134200 1225900 681370 1202500 95329 1622300 2003700 2216800 1235500 1552300 1395200 1122900 1187500 1 1 1 1 1 1 1 1 1 1 1 675580 1126300 0 1414900 490750 422870 362630 1222600 1159700 1120800 1186900 628950 1052100 44088 1408200 466730 509950 399200 1199700 1145900 1098800 1144200 1 1 0 1 1 1 1 1 1 1 1 715580000 245940000 469640000 124 1720 117 520;521 639;640 639 2 AAGPLLTDECR Unmodified 1201.5761 0.57612163 2625 Q9BQ69 MACROD1 O-acetyl-ADP-ribose deacetylase MACROD1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 38.451 38.563 2 1.8687E-35 12908 20211116_3441_TMUAki_TMT10x_S_F3 254.82 234.49 81667 128630 0 159260 276230 189630 114400 95242 111700 75666 110670 76026 120140 7771.4 160760 260680 189190 124420 101010 113720 74706 106790 1 1 0 1 1 1 1 1 1 1 1 81667 128630 0 159260 276230 189630 114400 95242 111700 75666 110670 76026 120140 7771.4 160760 260680 189190 124420 101010 113720 74706 106790 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 56892000 43059000 13833000 125 2625 118 522;523;524 641;642 642 2 AAGSDGTELFDQVHR Unmodified 1601.7434 0.74339797 2053 Q7L1T6 CYB5R4 Cytochrome b5 reductase 4 yes yes 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 41.89 41.773 3 1.4595E-06 12533 20211116_3430_TMUAki_TMT10x_P_F3 103.3 69.599 1129700 1770100 17609 1973500 2735100 2603800 1618100 1649800 1759200 1347400 1743000 1052000 1652500 132550 2008400 2595500 2592300 1704000 1716500 1782900 1328400 1681900 2 2 2 2 2 2 2 2 2 2 2 1129700 1770100 17609 1973500 2735100 2603800 1618100 1649800 1759200 1347400 1743000 1052000 1652500 132550 2008400 2595500 2592300 1704000 1716500 1782900 1328400 1681900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 121120000 121120000 0 126 2053 119 525;526 643;644 644 2 AAGTAAALAFLSQESR Acetyl (Protein N-term) 1604.8158 0.81583463 349 O75607 NPM3 Nucleoplasmin-3 yes yes 1 0 0 0 By MS/MS By MS/MS 5.5 0.957 1 2 2 1 4 2 80.48 80.487 2 1.7529E-93 26287 20211116_3445_TMUAki_TMT10x_S_F6 203.51 178.63 11213000 19885000 271670 20528000 14696000 19981000 16490000 14900000 12524000 12914000 16331000 10443000 18558000 774580 20888000 14150000 20275000 16510000 15346000 13050000 12695000 15636000 7 7 3 7 7 7 7 7 7 7 7 6805600 12740000 211360 13127000 9720100 14594000 10699000 9967500 8377300 8389600 10709000 6338300 11890000 483010 13387000 9357500 14673000 10730000 10321000 8706800 8258700 10258000 4 4 2 4 4 4 4 4 4 4 4 4407800 7144900 60314 7400400 4975600 5386400 5791000 4932600 4147000 4524800 5622600 4104200 6667900 291570 7501400 4792100 5601400 5780500 5025900 4343200 4436000 5378200 3 3 1 3 3 3 3 3 3 3 3 13726000000 6630000000 7096300000 127 349 120 527;528;529;530;531;532 645;646;647;648;649;650;651 650 7 AAGTLYTYPENWR Acetyl (Protein N-term) 1582.7416 0.74160705 821 P26641 EEF1G Elongation factor 1-gamma yes yes 1 0 0 0 By MS/MS By MS/MS 3.56 1.07 2 2 3 2 5 4 70.452 70.313 2 3.957E-26 22662 20211116_3431_TMUAki_TMT10x_P_F4 163.88 146.06 17735000 28043000 109300 26039000 18837000 27557000 20511000 18217000 18230000 17915000 22306000 16513000 26160000 1127900 26728000 18102000 27770000 20647000 18984000 18790000 17509000 21391000 11 11 4 11 11 11 11 11 11 11 11 11307000 17176000 42192 16208000 10937000 20637000 13426000 12052000 11576000 11039000 14713000 10527000 16024000 718670 16669000 10546000 20557000 13431000 12657000 11969000 10823000 14096000 7 7 2 7 7 7 7 7 7 7 7 6428600 10867000 67112 9830900 7899400 6919800 7085600 6164700 6654200 6875900 7593300 5986100 10136000 409200 10059000 7556900 7212100 7216400 6327200 6821700 6686000 7295900 4 4 2 4 4 4 4 4 4 4 4 11654000000 6430100000 5224000000 128 821 121 533;534;535;536;537;538;539;540;541 652;653;654;655;656;657;658;659;660;661;662;663 656 12 AAGVEAAAEVAATEIK Acetyl (Protein N-term) 1541.7937 0.7937022 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 1 0 0 0 By MS/MS By MS/MS 2.1 0.624 6 24 10 30 10 42.311 42.215 2 3.8293E-53 26211 20211116_3428_TMUAki_TMT10x_P_F1 168.3 147.97 61395000 98108000 579870 97691000 62518000 83032000 75363000 49887000 50342000 57861000 72431000 57168000 91544000 5510400 99471000 60295000 84747000 74997000 52633000 53093000 56181000 69187000 37 37 21 37 37 37 37 37 37 37 37 30632000 49040000 369850 46594000 29053000 49463000 34744000 25207000 24445000 28663000 34449000 28524000 45750000 2822600 47750000 28020000 49668000 34626000 26957000 25674000 27851000 32922000 27 27 17 27 27 27 27 27 27 27 27 30763000 49068000 210020 51097000 33465000 33569000 40619000 24679000 25897000 29198000 37981000 28644000 45794000 2687800 51722000 32275000 35079000 40371000 25676000 27418000 28330000 36265000 10 10 4 10 10 10 10 10 10 10 10 15912000000 8936400000 6975700000 129 1171 122 542;543;544;545;546;547;548;549;550;551;552;553;554;555;556;557;558;559;560;561;562;563;564;565;566;567;568;569;570;571;572;573;574;575;576;577;578;579;580;581 664;665;666;667;668;669;670;671;672;673;674;675;676;677;678;679;680;681;682;683;684;685;686;687;688;689;690;691;692;693;694;695;696;697;698;699;700;701;702;703;704;705;706;707 664 44 AAGVEAAAEVAATEIKMEEESGAPGVPSGNGAPGPK Acetyl (Protein N-term);Oxidation (M) 3406.6198 0.61984352 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M no no 1 0 1 1 By matching 2 0 1 1 20.836 20.866 4 1 NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 479480 0 479480 130 1171 123 582 0 AAGVNVEPFWPGLFAK Unmodified 1701.8879 0.88787736 506 P05386 RPLP1 60S acidic ribosomal protein P1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.89 1.64 9 30 33 4 1 3 4 51 33 68.135 68.086 2;3 3.0345E-52 28096 20211116_3430_TMUAki_TMT10x_P_F3 262.54 221.09 670160000 1065000000 296560 1140100000 656440000 702420000 702380000 244560000 196710000 326000000 657270000 623900000 994010000 45090000 1151200000 629990000 728300000 694400000 274190000 238590000 315030000 619790000 75 75 37 75 74 74 75 75 75 75 74 341300000 514750000 156040 567520000 305570000 475160000 355270000 124890000 97092000 159090000 338570000 317740000 480520000 22291000 573850000 293890000 481880000 349780000 145680000 118640000 153960000 319130000 43 43 20 43 43 43 43 43 43 43 42 328860000 550210000 140520 572540000 350870000 227260000 347110000 119660000 99621000 166910000 318710000 306170000 513490000 22800000 577340000 336100000 246410000 344620000 128510000 119950000 161070000 300660000 32 32 17 32 31 31 32 32 32 32 32 108260000000 63137000000 45126000000 131 506 124 583;584;585;586;587;588;589;590;591;592;593;594;595;596;597;598;599;600;601;602;603;604;605;606;607;608;609;610;611;612;613;614;615;616;617;618;619;620;621;622;623;624;625;626;627;628;629;630;631;632;633;634;635;636;637;638;639;640;641;642;643;644;645;646;647;648;649;650;651;652;653;654;655;656;657;658;659;660;661;662;663;664;665;666 708;709;710;711;712;713;714;715;716;717;718;719;720;721;722;723;724;725;726;727;728;729;730;731;732;733;734;735;736;737;738;739;740;741;742;743;744;745;746;747;748;749;750;751;752;753;754;755;756;757;758;759;760;761;762;763;764;765;766;767;768;769;770;771;772;773;774;775;776;777;778;779;780;781;782;783;784;785;786;787;788;789;790;791;792;793;794;795;796;797;798;799;800;801;802 740 95 AAGYDLYSAYDYTIPPMEK Oxidation (M) 2182.9769 0.97688788 908 P33316;P33316-2 DUT Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 5 0.707 1 2 1 2 2 70.8 70.813 3 3.0457E-05 22128 20211116_3445_TMUAki_TMT10x_S_F6 79.805 69.017 17783000 31944000 100550 21441000 25671000 27323000 20731000 26454000 26070000 26664000 26700000 16557000 29768000 1507900 22703000 24485000 27453000 21452000 26947000 26310000 26033000 25737000 5 5 2 5 5 5 5 5 5 5 5 1673300 2604700 44206 2041900 1512300 3403300 1958500 2164500 2110200 2126400 2219400 1558300 2428400 177670 2143200 1464000 3355300 1967900 2262100 2144000 2078300 2137600 1 1 1 1 1 1 1 1 1 1 1 16109000 29339000 56340 19399000 24158000 23920000 18773000 24290000 23960000 24538000 24481000 14998000 27339000 1330200 20560000 23021000 24097000 19484000 24685000 24166000 23955000 23600000 4 4 1 4 4 4 4 4 4 4 4 3012200000 1220900000 1791200000 132 908 125 667;668;669;670 803;804;805;806;807 806 1117 5 AAGYDLYSAYDYTIPPMEK Unmodified 2166.982 0.98197326 908 P33316;P33316-2 DUT Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial yes no 0 0 0 0 By MS/MS 6 0 1 1 77.364 77.333 3 3.2297E-06 25048 20211116_3445_TMUAki_TMT10x_S_F6 88.992 77.722 2495800 5036700 32178 4211700 4231300 2711600 3567200 2932100 3195900 3116200 3218600 2324000 4696700 261210 4332500 4042400 2859900 3641600 2975600 3268300 3035800 3104100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2495800 5036700 32178 4211700 4231300 2711600 3567200 2932100 3195900 3116200 3218600 2324000 4696700 261210 4332500 4042400 2859900 3641600 2975600 3268300 3035800 3104100 1 1 1 1 1 1 1 1 1 1 1 1038900000 0 1038900000 133 908 125 671 808 808 1 AAHEALGQFCCALHK Unmodified 1711.7923 0.79227919 2289 Q8TEX9;Q8TEX9-2 IPO4 Importin-4 yes no 0 0 0 0 By MS/MS 8 0 1 1 44.378 44.534 4 9.4606E-10 11917 20211116_3436_TMUAki_TMT10x_P_F8 131.35 109.15 2412700 3787000 34400 3974400 4844800 5085800 2979700 3195100 3083300 2566900 3408800 2246700 3534400 266150 4057900 4600600 5070100 3123100 3325200 3143700 2532800 3278300 2 2 2 2 2 2 2 2 2 2 2 2412700 3787000 34400 3974400 4844800 5085800 2979700 3195100 3083300 2566900 3408800 2246700 3534400 266150 4057900 4600600 5070100 3123100 3325200 3143700 2532800 3278300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 89291000 89291000 0 134 2289 126 672 809;810 809 2 AAHGVLLQALDEMR Oxidation (M) 1538.7875 0.78751139 2333 Q8WZA9 IRGQ Immunity-related GTPase family Q protein yes yes 0 0 1 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 46.323 46.458 3 0.0023886 12385 20211116_3445_TMUAki_TMT10x_S_F6 65.895 55.047 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 135 2333 127 673;674;675 811;812;813 813 2676 3 AAHIFNEALVCHQIR Unmodified 1777.9046 0.90460683 245 O43795;O43795-2 MYO1B Unconventional myosin-Ib yes no 0 0 0 0 By MS/MS By MS/MS 6.57 2.32 1 3 3 4 3 43.467 43.668 3;4 6.7131E-15 11513 20211116_3436_TMUAki_TMT10x_P_F8 157.5 146.85 2967900 4762000 35654 5665600 3040200 3043600 2938700 3854400 3980900 3337900 3880800 2763600 4446900 204820 5676800 2914100 3280500 3018400 3862500 4000700 3281300 3746700 6 6 4 6 6 6 6 6 6 6 6 574280 855150 0 895430 885120 1015500 704240 614590 559020 527240 646770 534640 798090 42970 912440 843560 1018100 719300 642490 578180 518530 621200 1 1 0 1 1 1 1 1 1 1 1 2393600 3906900 35654 4770200 2155100 2028100 2234400 3239800 3421900 2810700 3234000 2228900 3648800 161850 4764400 2070600 2262400 2299100 3220000 3422500 2762700 3125500 5 5 4 5 5 5 5 5 5 5 5 1455500000 955170000 500320000 136 245 128 676;677;678;679;680;681;682 814;815;816;817;818;819;820;821 815 8 AAHLCAEAALR Unmodified 1181.5975 0.59752577 3217 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 0 0 By MS/MS By MS/MS 4.54 1.81 2 3 4 8 9 4 2 3 14 21 31.65 31.715 2;3 1.0272E-15 7375 20211116_3431_TMUAki_TMT10x_P_F4 204.42 177.64 17790000 27463000 217000 29723000 25037000 24319000 18559000 18268000 16447000 17062000 22205000 16564000 25635000 1534800 30082000 23841000 24972000 19098000 18843000 17029000 16714000 21242000 38 38 23 38 38 38 38 38 38 38 38 10617000 15585000 89019 16589000 16858000 17990000 11028000 9743600 8608700 9578200 12097000 9884700 14547000 873440 16874000 16011000 18056000 11416000 10318000 8987600 9361400 11562000 15 15 9 15 15 15 15 15 15 15 15 7173200 11878000 127980 13134000 8179500 6328400 7530500 8524200 7838800 7484300 10108000 6679300 11088000 661380 13208000 7830000 6916100 7682000 8524900 8041600 7352400 9680400 23 23 14 23 23 23 23 23 23 23 23 6322300000 4030300000 2292000000 137 3217 129 683;684;685;686;687;688;689;690;691;692;693;694;695;696;697;698;699;700;701;702;703;704;705;706;707;708;709;710;711;712;713;714;715;716;717 822;823;824;825;826;827;828;829;830;831;832;833;834;835;836;837;838;839;840;841;842;843;844;845;846;847;848;849;850;851;852;853;854;855;856;857;858;859;860;861;862;863;864;865;866;867 828 46 AAHSEGNTTAGLDMR Unmodified 1529.6893 0.68925391 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 29.41 29.257 3 4.6109E-24 8766 20211116_3441_TMUAki_TMT10x_S_F3 188.63 175.75 357760 545730 0 578470 621550 557100 441240 268490 302150 270210 441740 333050 509350 25586 587510 590940 562370 452690 287600 318420 263830 421810 3 3 0 3 3 3 3 3 3 3 3 229750 324750 0 378910 491280 450330 283020 191140 219730 186960 294120 213900 303220 19238 383790 465600 448540 296010 207300 228950 182770 281420 2 2 0 2 2 2 2 2 2 2 2 128010 220990 0 199560 130270 106770 158220 77347 82414 83250 147630 119150 206120 6348.3 203710 125340 113830 156680 80303 89473 81063 140390 1 1 0 1 1 1 1 1 1 1 1 55967000 32634000 23333000 138 1429 130 718;719;720 868;869;870 870 3 AAHSEGNTTAGLDMR Oxidation (M) 1545.6842 0.68416853 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 1 0 By MS/MS 3 0 1 1 26.272 25.979 3 2.1134E-05 7488 20211116_3441_TMUAki_TMT10x_S_F3 97.45 78.206 28372 64011 0 55420 34180 31134 32203 36278 40879 31370 41684 26417 59697 0 56781 32723 33331 33036 36479 41236 30840 40186 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28372 64011 0 55420 34180 31134 32203 36278 40879 31370 41684 26417 59697 0 56781 32723 33331 33036 36479 41236 30840 40186 1 1 0 1 1 1 1 1 1 1 1 22718000 0 22718000 139 1429 130 721 871 871 1922 1 AAIAASEVLVDSAEEGSLAAAAELAAQKR Acetyl (Protein N-term) 2853.472 0.47198072 453 O95926;O95926-2 SYF2 Pre-mRNA-splicing factor SYF2 yes no 1 0 0 1 By MS/MS 2 0 1 1 82.988 82.988 3 1.3299E-63 28964 20211116_3429_TMUAki_TMT10x_P_F2 166.49 155.24 897630 1250400 0 1157900 787750 1520100 737890 801710 854870 879270 1013500 835510 1166500 38241 1193200 751820 1510100 754700 853700 870190 855550 972790 2 2 0 2 2 2 2 2 2 2 2 897630 1250400 0 1157900 787750 1520100 737890 801710 854870 879270 1013500 835510 1166500 38241 1193200 751820 1510100 754700 853700 870190 855550 972790 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 249050000 249050000 0 140 453 131 722 872;873 872 2 AAIDWFDGK Unmodified 1021.4869 0.48689592 940;2366 P35637;P35637-2;Q92804;Q92804-2 FUS;TAF15 RNA-binding protein FUS;TATA-binding protein-associated factor 2N no no 0 0 0 0 By MS/MS By MS/MS 5 1.41 2 2 2 2 2 5 5 68.901 68.847 2 3.0756E-05 24887 20211116_3441_TMUAki_TMT10x_S_F3 130.96 21.249 153890000 247380000 1200600 286310000 203500000 174430000 178700000 94472000 89200000 112630000 183410000 143290000 230980000 14227000 287660000 194550000 182800000 179790000 100630000 98004000 109250000 174010000 10 10 7 10 10 10 10 10 10 10 10 60809000 95426000 507200 114930000 116290000 114760000 103070000 36519000 32871000 44726000 73324000 56623000 89116000 6288600 115860000 111200000 115160000 103070000 41325000 37949000 43343000 69481000 4 4 3 4 4 4 4 4 4 4 4 93079000 151960000 693400 171390000 87205000 59668000 75623000 57953000 56328000 67907000 110080000 86668000 141860000 7938500 171800000 83345000 67638000 76716000 59307000 60056000 65911000 104530000 6 6 4 6 6 6 6 6 6 6 6 13713000000 7792600000 5920200000 141 940;2366 132 723;724;725;726;727;728;729;730;731;732 874;875;876;877;878;879;880;881;882;883;884;885;886 879 13 AAIGLLAR Unmodified 783.49667 0.49667274 541 P07741;P07741-2 APRT Adenine phosphoribosyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 47.585 47.405 2 0.0032291 13181 20211116_3440_TMUAki_TMT10x_S_F2 99.279 19.825 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 142 541 133 733;734 887;888 888 2 AAIISAEGDSK Unmodified 1060.5401 0.5400537 924 P35232 PHB Prohibitin yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 39.635 39.756 2;3 1.6851E-12 11585 20211116_3430_TMUAki_TMT10x_P_F3 144.77 117.29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 143 924 134 735;736 889;890 889 2 AAILPTSIFLTNK Unmodified 1387.8075 0.80750177 128 O14744;O14744-5;O14744-2;O14744-3 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed yes no 0 0 0 0 By MS/MS By matching 4 0 2 1 1 77.788 77.772 2 3.5829E-25 25781 20211116_3431_TMUAki_TMT10x_P_F4 225.3 194.62 9276700 14891000 0 13280000 9611700 17490000 10868000 10162000 9011600 11130000 12255000 8637000 13889000 711090 13725000 9243700 17393000 10901000 10731000 9364100 10830000 11721000 2 2 0 2 2 2 2 2 2 2 2 9276700 14891000 0 13280000 9611700 17490000 10868000 10162000 9011600 11130000 12255000 8637000 13889000 711090 13725000 9243700 17393000 10901000 10731000 9364100 10830000 11721000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1553500000 753270000 800280000 144 128 135 737;738 891;892 891 2 AAILPTSIFLTNKK Unmodified 1515.9025 0.90246479 128 O14744;O14744-5;O14744-2;O14744-3 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed yes no 0 0 0 1 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 68.176 68.324 3 4.7577E-08 21356 20211116_3445_TMUAki_TMT10x_S_F6 121.42 87.636 60497000 103280000 1136500 106240000 72271000 94997000 68364000 72396000 68001000 71063000 77444000 56337000 96378000 6239700 108010000 69267000 96962000 69537000 74708000 69530000 69459000 74415000 9 9 9 9 9 9 9 9 9 9 9 31231000 53675000 486400 55189000 40329000 65389000 38920000 38061000 35846000 36581000 39888000 29083000 50090000 3170000 56347000 38663000 65371000 39457000 40033000 36745000 35788000 38353000 5 5 5 5 5 5 5 5 5 5 5 29266000 49600000 650080 51055000 31942000 29608000 29444000 34335000 32155000 34482000 37556000 27255000 46288000 3069700 51661000 30604000 31592000 30081000 34675000 32786000 33671000 36062000 4 4 4 4 4 4 4 4 4 4 4 5250400000 2045700000 3204700000 145 128 136 739;740;741;742;743;744 893;894;895;896;897;898;899;900;901 900 9 AAILQTEVDALR Unmodified 1298.7194 0.71941505 2133 Q8IUD2;Q8IUD2-4;Q8IUD2-2;Q8IUD2-3;O15083 ERC1;ERC2 ELKS/Rab6-interacting/CAST family member 1;ERC protein 2 yes no 0 0 0 0 By MS/MS 4 0 1 1 62.359 62.222 2 1.3638E-05 19874 20211116_3442_TMUAki_TMT10x_S_F4 103.69 73.524 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 146 2133 137 745 902 902 1 AAKLEILQQQLQVANEAR Unmodified 2022.1222 0.12218741 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 64.811 64.631 3 1.0995E-23 21577 20211116_3429_TMUAki_TMT10x_P_F2 171.04 164 11443000 20631000 148400 15851000 14615000 21282000 14887000 17565000 16745000 16795000 17040000 10656000 19233000 1116100 16590000 14028000 21262000 15144000 18024000 16965000 16435000 16429000 4 4 2 4 4 4 4 4 4 4 4 7148900 12643000 85363 9423700 7783800 15879000 9523800 10919000 10671000 10789000 10478000 6656900 11786000 675220 9937700 7512000 15667000 9604900 11348000 10799000 10542000 10114000 2 2 1 2 2 2 2 2 2 2 2 4294400 7987500 63034 6427700 6830900 5403300 5363000 6646600 6074500 6006500 6561900 3998900 7447400 440840 6652100 6516100 5595600 5538700 6675900 6166000 5892600 6315000 2 2 1 2 2 2 2 2 2 2 2 2194600000 1355600000 838930000 147 1741 138 746;747;748 903;904;905;906 904 4 AAKPSVPK Unmodified 796.48069 0.48068833 2336 Q92522 H1FX Histone H1x yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 31.932 31.962 3 0.020831 8692 20211116_3439_TMUAki_TMT10x_S_F1 61.09 42.65 1445400 2544800 7928 2102900 1649900 1413000 2088000 1181900 1306900 1322700 1736200 1345900 2373000 130090 2166200 1593500 1476800 2070800 1217600 1378900 1286000 1661500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1445400 2544800 7928 2102900 1649900 1413000 2088000 1181900 1306900 1322700 1736200 1345900 2373000 130090 2166200 1593500 1476800 2070800 1217600 1378900 1286000 1661500 1 1 1 1 1 1 1 1 1 1 1 76302000 0 76302000 148 2336 139 749;750 907;908 908 2 AAKVATK Unmodified 687.42792 0.42792448 2344 Q92576;Q92576-2 PHF3 PHD finger protein 3 yes no 0 0 0 1 By MS/MS 2 0 1 1 30.727 30.501 3 0.05269 7711 20211116_3429_TMUAki_TMT10x_P_F2 54.549 13.322 2451300 4361800 8632.6 1893900 2919700 7620500 2774000 6913300 1954600 4251000 4216400 2282500 4060800 217840 2192000 2796400 7394200 2796000 6984900 2104500 4261400 3997400 1 1 1 1 1 1 1 1 1 1 1 2451300 4361800 8632.6 1893900 2919700 7620500 2774000 6913300 1954600 4251000 4216400 2282500 4060800 217840 2192000 2796400 7394200 2796000 6984900 2104500 4261400 3997400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 114020000 114020000 0 149 2344 140 751 909 909 1 AALAHPFFQDVTKPVPHLR Unmodified 2143.1691 0.16907802 797 P24941;P24941-2 CDK2 Cyclin-dependent kinase 2 yes no 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 52.378 52.501 5 1.4163E-23 15871 20211116_3442_TMUAki_TMT10x_S_F4 162.41 152.83 5862400 8846400 0 9917500 7067800 8865700 6760100 6404000 7224700 6778800 6840800 5457800 8258600 154730 10026000 6763800 9041300 6887600 6646600 7316000 6605100 6610900 2 2 0 2 2 2 2 2 2 2 2 2870800 4434500 0 5435800 4841400 6152200 4680000 3550700 4325100 3689200 3583900 2673000 4141600 0 5485400 4638100 6164800 4744600 3745600 4389300 3597400 3480200 1 1 0 1 1 1 1 1 1 1 1 2991600 4411800 0 4481700 2226400 2713500 2080100 2853300 2899700 3089600 3256900 2784800 4117000 154730 4540700 2125700 2876500 2143000 2901000 2926700 3007700 3130800 1 1 0 1 1 1 1 1 1 1 1 2722900000 1379100000 1343800000 150 797 141 752;753 910;911 911 2 AALAPLPPLPAQFK Acetyl (Protein N-term) 1474.8548 0.85478632 2882 Q9NP79 VTA1 Vacuolar protein sorting-associated protein VTA1 homolog yes yes 1 0 0 0 By MS/MS By MS/MS 5 3.06 4 1 1 3 4 7 6 74.657 74.656 2;3 1.2586E-23 26547 20211116_3428_TMUAki_TMT10x_P_F1 143.86 101.88 22151000 37262000 230540 31971000 24866000 38183000 27056000 25338000 24036000 23730000 28417000 20625000 34749000 1907700 33082000 23900000 38226000 27236000 26362000 24740000 23242000 27277000 12 12 5 12 12 12 12 12 12 12 12 13920000 23048000 212640 19871000 14581000 28637000 17826000 16130000 15544000 15092000 17881000 12961000 21495000 1216200 20628000 14065000 28351000 17841000 17000000 15996000 14783000 17177000 6 6 3 6 6 6 6 6 6 6 6 8231800 14213000 17891 12099000 10285000 9545900 9230600 9207800 8492000 8637800 10535000 7664500 13255000 691520 12454000 9834400 9874600 9395300 9361900 8744000 8459600 10100000 6 6 2 6 6 6 6 6 6 6 6 7845100000 5455600000 2389500000 151 2882 142 754;755;756;757;758;759;760;761;762;763;764;765;766 912;913;914;915;916;917;918;919;920;921;922;923;924;925 912 14 AALCAVHVIR Unmodified 1108.6175 0.61753293 241 O43747;O43747-2 AP1G1 AP-1 complex subunit gamma-1 yes no 0 0 0 0 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 37.382 37.394 3 5.9459E-07 11050 20211116_3439_TMUAki_TMT10x_S_F1 154.12 132.03 2696100 4220400 0 4270000 4848300 5681500 3659100 4266800 4374800 3921200 4004400 2510100 3938200 223020 4373700 4616800 5669100 3795900 4399200 4406100 3843900 3874300 5 5 0 5 5 5 5 5 5 5 5 1877100 2837700 0 2938500 3987800 4790500 2714300 3115000 3250400 2823600 2811900 1747600 2648300 161300 3018300 3790100 4728400 2836400 3242900 3267700 2769700 2726100 3 3 0 3 3 3 3 3 3 3 3 818930 1382600 0 1331500 860460 891030 944780 1151800 1124400 1097600 1192500 762450 1290000 61726 1355400 826730 940750 959480 1156300 1138400 1074200 1148200 2 2 0 2 2 2 2 2 2 2 2 492090000 317580000 174510000 152 241 143 767;768;769;770;771;772 926;927;928;929;930;931 929 6 AALDGTPGMIGYGMAK 2 Oxidation (M) 1583.7324 0.73236428 573 P09417;P09417-2 QDPR Dihydropteridine reductase yes no 0 0 2 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 49.016 49.196 3 0.0023833 13244 20211116_3444_TMUAki_TMT10x_S_F5 61.409 46.437 1216600 2251100 0 2553900 1394400 1000600 1182600 2276400 2455000 1910200 2103600 1132400 2101600 56360 2560800 1328700 1143900 1250000 2239200 2429400 1880700 2040200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1216600 2251100 0 2553900 1394400 1000600 1182600 2276400 2455000 1910200 2103600 1132400 2101600 56360 2560800 1328700 1143900 1250000 2239200 2429400 1880700 2040200 1 1 0 1 1 1 1 1 1 1 1 155230000 0 155230000 153 573 144 773;774 932;933 933 541;542 2 AALDSLSLFTSLGLSEQK Acetyl (Protein N-term) 1921.0044 0.004423261 1065 P47897;P47897-2 QARS Glutamine--tRNA ligase yes no 1 0 0 0 By MS/MS 4 0 3 3 84.343 84.352 2;3 2.9321E-31 28478 20211116_3431_TMUAki_TMT10x_P_F4 112.43 88.825 1458400 2262800 8666.1 2270900 1413100 2940200 1711300 1371600 1512600 1673000 1838600 1357900 2111500 120850 2326100 1362500 2918700 1714100 1482800 1559000 1621500 1763600 3 3 2 3 3 3 3 3 3 3 3 1458400 2262800 8666.1 2270900 1413100 2940200 1711300 1371600 1512600 1673000 1838600 1357900 2111500 120850 2326100 1362500 2918700 1714100 1482800 1559000 1621500 1763600 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 103760000 103760000 0 154 1065 145 775;776;777 934;935;936;937 936 4 AALEALGSCLNNK Unmodified 1359.6816 0.68164933 915 P34897;P34897-3;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.73 2.93 3 4 4 6 5 61.63 61.91 2;3 3.848E-78 18935 20211116_3436_TMUAki_TMT10x_P_F8 341.15 246.3 53843000 87012000 759190 99776000 80210000 93048000 59854000 66138000 61542000 62029000 71548000 50138000 81239000 5440200 100790000 76437000 94601000 61829000 68480000 62889000 60750000 68710000 10 10 7 10 10 10 10 10 10 10 10 31124000 48229000 525240 55827000 58571000 71754000 40887000 37469000 35317000 34912000 39298000 28983000 45031000 3417900 56654000 55746000 71345000 42225000 39750000 36314000 34203000 37786000 5 5 4 5 5 5 5 5 5 5 5 22719000 38783000 233960 43950000 21639000 21294000 18967000 28669000 26225000 27117000 32250000 21155000 36208000 2022300 44132000 20691000 23256000 19604000 28730000 26575000 26548000 30924000 5 5 3 5 5 5 5 5 5 5 5 8859700000 5292300000 3567400000 155 915 146 778;779;780;781;782;783;784;785;786;787;788 938;939;940;941;942;943;944;945;946;947;948;949 944 12 AALEALGSCLNNKYSEGYPGKR Unmodified 2397.1747 0.17469326 915 P34897;P34897-3;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 2 By MS/MS 3 0 1 1 60.352 59.933 4 1.9798E-05 21203 20211116_3441_TMUAki_TMT10x_S_F3 80.238 72.151 5102800 9849300 42900 7983900 13690000 7100500 5080000 10159000 7589800 7165400 8540600 4751600 9183400 583310 8263500 12913000 7356700 5680800 10085000 7645300 7121500 8209300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5102800 9849300 42900 7983900 13690000 7100500 5080000 10159000 7589800 7165400 8540600 4751600 9183400 583310 8263500 12913000 7356700 5680800 10085000 7645300 7121500 8209300 2 2 2 2 2 2 2 2 2 2 2 681360000 0 681360000 156 915 147 789 950;951 951 2 AALEAVGGTVVLE Unmodified 1227.6711 0.67106787 1189 P52815 MRPL12 39S ribosomal protein L12, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3.1 1.3 1 3 2 2 2 4 6 74.561 74.466 2 7.1047E-12 27000 20211116_3441_TMUAki_TMT10x_S_F3 156.51 134.36 20905000 34269000 195140 32777000 23950000 29871000 25626000 22506000 20707000 22233000 26571000 19465000 31971000 1860500 33500000 23012000 30444000 25754000 23246000 21489000 21725000 25450000 10 10 5 10 10 10 10 10 10 10 10 9487500 14935000 106600 14533000 8913500 16621000 10828000 9363500 8884200 9610200 11889000 8834500 13935000 862760 14886000 8600200 16640000 10823000 9893800 9229900 9375600 11376000 4 4 2 4 4 4 4 4 4 4 4 11417000 19334000 88540 18244000 15036000 13250000 14798000 13143000 11823000 12623000 14682000 10630000 18036000 997790 18614000 14412000 13804000 14931000 13352000 12260000 12349000 14075000 6 6 3 6 6 6 6 6 6 6 6 3977700000 1781800000 2195900000 157 1189 148 790;791;792;793;794;795;796;797;798;799 952;953;954;955;956;957;958;959;960;961;962;963 960 12 AALEEFSR Unmodified 921.4556 0.45559579 2379 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 42.078 42.132 2 0.0090462 11668 20211116_3442_TMUAki_TMT10x_S_F4 82.426 14.962 1507900 2249200 0 2690500 4241100 3489900 1986600 1756400 1842800 1659300 2167800 1403900 2100400 151050 2725600 4009100 3467000 2128500 1870400 1892500 1624600 2081100 2 2 0 2 2 2 2 2 2 2 2 1507900 2249200 0 2690500 4241100 3489900 1986600 1756400 1842800 1659300 2167800 1403900 2100400 151050 2725600 4009100 3467000 2128500 1870400 1892500 1624600 2081100 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 77398000 77398000 0 158 2379 149 800;801;802 964;965;966;967 967 4 AALEEVYPDLTPEETRR Unmodified 1987.9851 0.9850848 2772 Q9H0D6;Q9H0D6-2 XRN2 5'-3' exoribonuclease 2 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 53.709 53.531 3 1.3683E-11 16984 20211116_3429_TMUAki_TMT10x_P_F2 138.81 115.45 27210000 45083000 470180 47745000 31877000 39194000 26390000 36743000 35510000 32680000 38515000 25339000 42077000 2526000 48391000 30456000 40401000 27338000 37360000 35833000 32085000 37061000 14 14 13 14 14 14 14 14 14 14 14 10399000 17098000 244820 18458000 16697000 24622000 13901000 14631000 14283000 12454000 14680000 9684600 15959000 1178500 18827000 15954000 24479000 14258000 15314000 14528000 12253000 14149000 6 6 6 6 6 6 6 6 6 6 6 16811000 27986000 225360 29286000 15180000 14572000 12490000 22112000 21227000 20226000 23834000 15654000 26118000 1347400 29565000 14501000 15922000 13080000 22045000 21305000 19832000 22912000 8 8 7 8 8 8 8 8 8 8 8 3693000000 1921600000 1771400000 159 2772 150 803;804;805;806;807;808;809;810 968;969;970;971;972;973;974;975;976;977;978;979;980;981;982 970 15 AALETDENLLLCAPTGAGK Unmodified 1942.967 0.9669919 352 O75643;O75643-2 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 0 0 0 0 By MS/MS By MS/MS 4.14 0.833 2 2 3 4 3 70.078 69.879 3 1.5031E-12 22974 20211116_3442_TMUAki_TMT10x_S_F4 132.64 121.2 33472000 56031000 69054 56755000 37046000 44745000 38443000 30758000 27576000 33924000 41606000 31165000 52286000 2660900 57669000 35546000 46009000 38585000 32073000 29027000 33002000 39701000 9 9 3 9 9 9 9 9 9 9 9 14718000 23795000 39132 23838000 17284000 27487000 18411000 14320000 12138000 15138000 18085000 13703000 22204000 1133500 24370000 16593000 27481000 18422000 15249000 12834000 14750000 17262000 4 4 1 4 4 4 4 4 4 4 4 18754000 32236000 29922 32917000 19762000 17258000 20032000 16438000 15438000 18786000 23521000 17461000 30082000 1527400 33299000 18953000 18529000 20163000 16825000 16193000 18251000 22440000 5 5 2 5 5 5 5 5 5 5 5 2896400000 1724700000 1171700000 160 352 151 811;812;813;814;815;816;817 983;984;985;986;987;988;989;990;991;992;993;994 992 12 AALEYLEDIDLK Unmodified 1391.7184 0.718412 2646 Q9BRX8;Q9BRX8-2 FAM213A Redox-regulatory protein FAM213A yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 78.752 78.695 2;3 8.1184E-17 27242 20211116_3429_TMUAki_TMT10x_P_F2 213.34 161.07 13810000 23693000 188300 22026000 17053000 19248000 17020000 11259000 11089000 12507000 16183000 12859000 22102000 1322900 22546000 16359000 19601000 17082000 11888000 11722000 12163000 15453000 3 3 2 3 3 3 3 3 3 3 3 5794100 9402300 72523 8665100 5212600 9399300 5979400 4528200 4470100 5322700 6348200 5395400 8770600 539820 8902800 5021800 9420700 5978300 4873500 4680200 5165700 6065800 1 1 1 1 1 1 1 1 1 1 1 8015500 14291000 115780 13361000 11841000 9849100 11040000 6731200 6619200 7184000 9834400 7463700 13332000 783130 13643000 11338000 10180000 11104000 7014800 7041500 6997600 9387300 2 2 1 2 2 2 2 2 2 2 2 1727000000 752670000 974360000 161 2646 152 818;819;820 995;996;997 995 3 AALGEPVRLER Acetyl (Protein N-term) 1251.6935 0.69353465 2955 Q9NUP9 LIN7C Protein lin-7 homolog C yes yes 1 0 0 1 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 43.676 43.564 2 9.7615E-07 12996 20211116_3429_TMUAki_TMT10x_P_F2 79.986 48.051 6641600 11005000 79616 12137000 12494000 12383000 9101700 9754900 8612300 7847900 10397000 6184500 10273000 696910 12305000 11898000 12541000 9394500 9993600 8846300 7743300 9974300 8 8 6 8 8 8 8 8 8 8 8 4208700 6933600 49461 7453600 10261000 10614000 6895400 6435000 5682600 5236500 6804400 3919000 6471800 474930 7614400 9756500 10524000 7132700 6717700 5873900 5163600 6529200 5 5 4 5 5 5 5 5 5 5 5 2432900 4071700 30155 4683000 2232900 1768900 2206300 3319800 2929700 2611500 3592500 2265500 3801600 221980 4690700 2141800 2016600 2261700 3275900 2972300 2579700 3445100 3 3 2 3 3 3 3 3 3 3 3 771500000 489600000 281900000 162 2955 153 821;822;823;824;825;826 998;999;1000;1001;1002;1003;1004;1005;1006 1000 9 AALGPLVTGLYDVQAFK Unmodified 1761.9665 0.96652161 618 P11172 UMPS Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase yes yes 0 0 0 0 By MS/MS By MS/MS 2.2 0.4 4 1 2 3 79.955 79.926 2;3 1.345E-57 26455 20211116_3440_TMUAki_TMT10x_S_F2 243.53 219.92 13880000 22201000 0 21298000 14077000 19103000 16642000 11695000 11926000 13010000 15636000 12923000 20712000 989510 21758000 13552000 19430000 16601000 12304000 12471000 12652000 14968000 3 3 0 3 3 3 3 3 3 3 3 9208100 13352000 0 13092000 7231400 13998000 10047000 7568300 7826300 8458500 9718900 8573200 12458000 671500 13388000 7000500 14060000 9975200 8046100 8126300 8224300 9316900 2 2 0 2 2 2 2 2 2 2 2 4672100 8848800 0 8206000 6845900 5105000 6595400 4127000 4100000 4551200 5916800 4349400 8254400 318010 8370500 6551400 5369900 6625900 4258100 4344700 4427500 5651500 1 1 0 1 1 1 1 1 1 1 1 2966400000 1005300000 1961200000 163 618 154 827;828;829;830;831 1007;1008;1009;1010;1011 1011 5 AALGPSSQNVTEYVVR Acetyl (Protein N-term) 1731.8792 0.87916317 932 P35269 GTF2F1 General transcription factor IIF subunit 1 yes yes 1 0 0 0 By MS/MS 4 0 1 1 65.006 65.105 2 3.1906E-06 20569 20211116_3431_TMUAki_TMT10x_P_F4 71.176 41.366 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 164 932 155 832 1012 1012 1 AALGVLESDLPSAVTLLK Acetyl (Protein N-term) 1838.0401 0.040080486 2242 Q8NEJ9;Q8NEJ9-2 NGDN Neuroguidin yes no 1 0 0 0 By MS/MS By MS/MS 3.71 1.6 1 4 3 4 1 4 8 9 84.366 84.365 2;3 9.2301E-58 27862 20211116_3445_TMUAki_TMT10x_S_F6 174.68 155.9 14187000 23426000 63600 22710000 16326000 22278000 17435000 14958000 14122000 15239000 17352000 13210000 21856000 1080900 23212000 15681000 22557000 17525000 15586000 14626000 14871000 16639000 18 18 7 18 18 18 18 18 18 18 18 8630600 13714000 31821 13703000 8232900 15704000 10204000 9135800 8395400 9012600 9948000 8035700 12797000 590870 14010000 7942300 15727000 10192000 9616400 8675200 8807300 9548400 9 9 4 9 9 9 9 9 9 9 9 5556800 9711600 31779 9006800 8093500 6574300 7231000 5822100 5726300 6225900 7403600 5173800 9059300 490040 9201800 7738400 6830600 7333200 5969600 5950800 6063900 7090100 9 9 3 9 9 9 9 9 9 9 9 1439100000 737150000 701930000 165 2242 156 833;834;835;836;837;838;839;840;841;842;843;844;845;846;847;848;849 1013;1014;1015;1016;1017;1018;1019;1020;1021;1022;1023;1024;1025;1026;1027;1028;1029 1029 17 AALLEFEERER Unmodified 1361.6939 0.69392858 2449 Q96EV2 RBM33 RNA-binding protein 33 yes yes 0 0 0 1 By matching By MS/MS 2.5 0.5 1 1 1 1 48.028 47.714 3 1.3881E-05 16183 20211116_3441_TMUAki_TMT10x_S_F3 107.09 70.11 1068400 1844700 15040 1923800 1253300 964680 1075700 1693100 1495100 1295200 1525200 994910 1721600 105190 1942700 1198200 1058300 1113400 1672700 1503800 1281300 1470400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1068400 1844700 15040 1923800 1253300 964680 1075700 1693100 1495100 1295200 1525200 994910 1721600 105190 1942700 1198200 1058300 1113400 1672700 1503800 1281300 1470400 1 1 1 1 1 1 1 1 1 1 1 208270000 100670000 107600000 166 2449 157 850;851 1030 1030 1 AALLELWELRR Unmodified 1368.7878 0.78776939 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 71.915 71.544 3 3.2255E-15 22914 20211116_3440_TMUAki_TMT10x_S_F2 167.18 119.17 1559500 2227600 9337.8 2292300 1701000 1173500 1657800 937850 802750 1077700 1614300 1452100 2078800 139980 2317300 1630400 1259200 1657300 969630 882870 1046800 1532200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1559500 2227600 9337.8 2292300 1701000 1173500 1657800 937850 802750 1077700 1614300 1452100 2078800 139980 2317300 1630400 1259200 1657300 969630 882870 1046800 1532200 1 1 1 1 1 1 1 1 1 1 1 297790000 0 297790000 167 1663 158 852;853;854;855 1031;1032;1033;1034 1033 4 AALLNQHYQVNFK Unmodified 1544.81 0.80996139 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 52.998 52.807 3 1.0257E-19 16705 20211116_3429_TMUAki_TMT10x_P_F2 194.17 167.2 27927000 46644000 317420 50770000 42153000 44559000 30618000 45053000 41987000 40414000 41580000 26005000 43539000 2734400 51410000 40142000 45788000 32012000 45643000 42203000 39662000 40124000 6 6 5 6 6 6 6 6 6 6 6 12207000 18810000 76210 20598000 24617000 30699000 17231000 18547000 17489000 16646000 16651000 11366000 17558000 1180900 21038000 23418000 30378000 17872000 19414000 17751000 16336000 16089000 3 3 2 3 3 3 3 3 3 3 3 15720000 27834000 241210 30173000 17536000 13860000 13387000 26506000 24498000 23768000 24929000 14639000 25981000 1553500 30372000 16724000 15410000 14140000 26229000 24451000 23326000 24035000 3 3 3 3 3 3 3 3 3 3 3 5995400000 3744200000 2251200000 168 542 159 856;857;858;859;860 1035;1036;1037;1038;1039;1040 1036 6 AALLTER Unmodified 772.4443 0.44430282 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 35.608 35.632 2 0.00461 8296 20211116_3442_TMUAki_TMT10x_S_F4 112.59 41.46 7791800 13430000 0 13324000 14169000 14056000 8976000 6822700 6122400 5825300 9768900 7252900 12532000 476960 13611000 13438000 14112000 9287900 7272000 6482700 5730400 9310800 7 7 0 7 7 7 7 7 7 7 7 6680100 11572000 0 11629000 12945000 13082000 7723800 5790700 5000600 4780500 8366300 6217900 10798000 407640 11882000 12266000 13073000 8023300 6225300 5325800 4710500 7966400 2 2 0 2 2 2 2 2 2 2 2 1111700 1858800 0 1694100 1223800 974380 1252200 1032000 1121800 1044800 1402600 1034900 1733800 69318 1729100 1172600 1038300 1264600 1046700 1156900 1019900 1344400 5 5 0 5 5 5 5 5 5 5 5 244550000 212020000 32532000 169 3317 160 861;862;863;864 1041;1042;1043;1044;1045;1046;1047;1048 1045 8 AALNALQPPEFR Unmodified 1325.7092 0.70918471 1888 Q3ZAQ7 VMA21 Vacuolar ATPase assembly integral membrane protein VMA21 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 3 1 2 59.572 60.189 2 1.5171E-11 19808 20211116_3446_TMUAki_TMT10x_S_F7 128.03 104.18 3920800 6492500 10199 6220400 5181600 8579700 5210600 5301800 4966000 4849100 5104100 3650700 6057200 352220 6400300 4969700 8521200 5276200 5542400 5067700 4754600 4919400 1 1 1 1 1 1 1 1 1 1 1 3920800 6492500 10199 6220400 5181600 8579700 5210600 5301800 4966000 4849100 5104100 3650700 6057200 352220 6400300 4969700 8521200 5276200 5542400 5067700 4754600 4919400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 900070000 594590000 305490000 170 1888 161 865;866;867 1049;1050 1050 2 AALQEELQLCK Unmodified 1301.6649 0.66493664 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 2 4 4 6 4 57.829 57.887 2;3 8.7861E-19 17624 20211116_3431_TMUAki_TMT10x_P_F4 228.64 174.22 59380000 95068000 469030 101710000 66699000 71108000 52244000 66785000 63099000 62064000 71932000 55290000 88733000 5261800 102840000 63606000 74231000 54085000 67980000 64031000 60810000 69117000 11 11 7 11 11 11 11 11 11 11 11 24919000 38323000 49128 42148000 37144000 45026000 26747000 24276000 24042000 23471000 28237000 23201000 35774000 2104400 42771000 35345000 45225000 27590000 25705000 24726000 22957000 27110000 4 4 1 4 4 4 4 4 4 4 4 34461000 56745000 419900 59565000 29555000 26082000 25497000 42509000 39057000 38593000 43695000 32089000 52959000 3157400 60066000 28261000 29005000 26495000 42274000 39305000 37853000 42007000 7 7 6 7 7 7 7 7 7 7 7 5500600000 3054100000 2446600000 171 1092 162 868;869;870;871;872;873;874;875;876;877 1051;1052;1053;1054;1055;1056;1057;1058;1059;1060;1061;1062 1053 12 AALQELLSK Unmodified 971.56515 0.56514624 1372 P62851 RPS25 40S ribosomal protein S25 yes yes 0 0 0 0 By MS/MS By MS/MS 6.83 1.07 1 1 2 2 4 2 66.831 67.012 2 0.00052247 20708 20211116_3447_TMUAki_TMT10x_S_F8 119.68 82.205 228010000 367420000 5461700 420950000 322090000 359640000 276730000 178160000 165450000 197040000 260710000 212340000 343040000 25311000 424740000 308020000 366080000 279620000 190860000 176570000 191660000 248550000 8 8 8 8 8 8 8 8 8 8 8 152760000 240300000 4375700 273580000 247410000 295390000 207840000 122280000 113200000 127590000 167090000 142260000 224350000 18068000 277070000 236500000 295690000 209960000 133220000 121220000 124390000 159520000 5 5 5 5 5 5 5 5 5 5 5 75253000 127120000 1085900 147370000 74679000 64246000 68882000 55882000 52247000 69448000 93619000 70077000 118690000 7243000 147670000 71526000 70390000 69658000 57645000 55348000 67268000 89030000 3 3 3 3 3 3 3 3 3 3 3 11605000000 6595800000 5009500000 172 1372 163 878;879;880;881;882;883 1063;1064;1065;1066;1067;1068;1069;1070 1070 8 AALQELLSKGLIKLVSK Unmodified 1810.1292 0.12917026 1372 P62851 RPS25 40S ribosomal protein S25 yes yes 0 0 0 2 By matching By MS/MS 8 0 2 1 1 79.234 79.222 4 2.1855E-22 25495 20211116_3447_TMUAki_TMT10x_S_F8 178.77 178.77 4611100 7791400 0 5528400 15675000 4261700 5667600 5746100 3464000 4527900 5008200 4293000 7261700 496490 5780800 14775000 4453100 6203900 5730900 3675200 4472400 4783400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4611100 7791400 0 5528400 15675000 4261700 5667600 5746100 3464000 4527900 5008200 4293000 7261700 496490 5780800 14775000 4453100 6203900 5730900 3675200 4472400 4783400 1 1 0 1 1 1 1 1 1 1 1 3354500000 1001300000 2353200000 173 1372 164 884;885 1071 1071 1 AALRDLGCHVELR Unmodified 1508.7882 0.78818009 1986 Q6NXE6;Q6NXE6-2 ARMC6 Armadillo repeat-containing protein 6 yes no 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 38.87 39.092 4 1.4813E-05 10986 20211116_3435_TMUAki_TMT10x_P_F7 101.61 79.133 261090 382490 0 421570 512980 547910 301340 320950 321900 284310 326130 243090 357050 23818 429200 486460 545280 317370 336680 326730 279190 314470 1 1 0 1 1 1 1 1 1 1 1 261090 382490 0 421570 512980 547910 301340 320950 321900 284310 326130 243090 357050 23818 429200 486460 545280 317370 336680 326730 279190 314470 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57171000 57171000 0 174 1986 165 886;887 1072 1072 1 AALRDYETVVK Unmodified 1263.6823 0.68230126 1197 P53041 PPP5C Serine/threonine-protein phosphatase 5 yes yes 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 44.375 44.519 3 1.24E-07 11322 20211116_3444_TMUAki_TMT10x_S_F5 116.54 81.818 5394900 8533600 44700 10431000 10734000 9560500 6361300 7806800 8079900 6607900 8020300 5023400 7969900 548070 10494000 10184000 9753900 6734400 7990000 8142600 6503000 7738700 4 4 3 4 4 4 4 4 4 4 4 3272900 5120500 21962 6201100 8686200 7901300 4443200 4793800 4790000 3969700 4740100 3047400 4782100 351990 6275300 8222400 7874700 4739600 5006200 4856100 3911000 4574100 2 2 1 2 2 2 2 2 2 2 2 2122000 3413100 22738 4229700 2047700 1659100 1918100 3012900 3289900 2638200 3280200 1976000 3187800 196080 4218900 1961500 1879200 1994900 2983800 3286500 2592100 3164600 2 2 2 2 2 2 2 2 2 2 2 337940000 240050000 97895000 175 1197 166 888;889;890;891 1073;1074;1075;1076;1077;1078 1076 6 AALRPLVKPK Unmodified 1091.7179 0.71789891 1382 P62910 RPL32 60S ribosomal protein L32 yes yes 0 0 0 2 By MS/MS 4 0 1 1 36.603 36.631 3 0.035301 9021 20211116_3431_TMUAki_TMT10x_P_F4 61.78 53.996 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 176 1382 167 892 1079 1079 1 AALSALESFLK Unmodified 1148.6441 0.64412484 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 79.952 79.935 2 2.0033E-14 26452 20211116_3440_TMUAki_TMT10x_S_F2 161.17 130.6 3260600 5295600 10439 5258300 3283400 5840100 3872200 2800900 3252100 3460500 4054400 3036000 4941200 280370 5375700 3163700 5845400 3877800 3020900 3364000 3352500 3886300 1 1 1 1 1 1 1 1 1 1 1 3260600 5295600 10439 5258300 3283400 5840100 3872200 2800900 3252100 3460500 4054400 3036000 4941200 280370 5375700 3163700 5845400 3877800 3020900 3364000 3352500 3886300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 488400000 488400000 0 177 1433 168 893;894 1080;1081 1081 2 AALSSQQQQQLALLLQQFQTLK Unmodified 2484.37 0.37002225 2028 Q6Y7W6;Q6Y7W6-4;Q6Y7W6-5;Q6Y7W6-3 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 4 2 2 81.212 81.211 3;4 8.1986E-69 26594 20211116_3445_TMUAki_TMT10x_S_F6 254.71 230.82 11473000 18477000 120480 18286000 13075000 14869000 14044000 9229100 8970700 9908700 13394000 10682000 17240000 941520 18618000 12559000 15232000 14037000 9688500 9505100 9649300 12784000 8 8 4 8 8 8 8 8 8 8 8 5059000 7609500 45905 7796500 4703800 7933100 5471000 4196600 3866100 4454700 5774000 4710200 7101100 388180 7942500 4527800 7989300 5459600 4463100 4071000 4340100 5510900 3 3 1 3 3 3 3 3 3 3 3 6414200 10867000 74571 10490000 8370900 6936200 8572600 5032500 5104600 5453900 7619700 5972200 10139000 553350 10675000 8031100 7242500 8577700 5225400 5434100 5309200 7272600 5 5 3 5 5 5 5 5 5 5 5 3558100000 1334300000 2223800000 178 2028 169 895;896;897;898 1082;1083;1084;1085;1086;1087;1088;1089 1085 8 AALTAEHFAALQSLLK Acetyl (Protein N-term) 1724.9461 0.94612052 3041 Q9P000;Q9P000-2 COMMD9 COMM domain-containing protein 9 yes no 1 0 0 0 By MS/MS By matching 8 0 2 1 1 79.523 79.518 2 1.1416E-10 26233 20211116_3436_TMUAki_TMT10x_P_F8 57.175 40.504 1778800 2722500 36205 2645100 1665900 3040000 2404800 1696400 1423300 1969300 2091700 1656500 2540100 179640 2709800 1618100 3042400 2370300 1800800 1514600 1912000 1997100 1 1 1 1 1 1 1 1 1 1 1 1778800 2722500 36205 2645100 1665900 3040000 2404800 1696400 1423300 1969300 2091700 1656500 2540100 179640 2709800 1618100 3042400 2370300 1800800 1514600 1912000 1997100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 814290000 528730000 285560000 179 3041 170 899;900 1090 1090 1 AALTGLLHR Unmodified 950.56615 0.56614929 1237 P55084;P55084-2 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 43.207 43.12 3 2.3645E-06 11438 20211116_3440_TMUAki_TMT10x_S_F2 173.48 145.65 535590 875370 6251.6 951670 682670 626190 556730 639870 634660 583320 686640 498730 817100 51838 960610 651760 658300 573710 648190 644090 572030 660770 3 3 2 3 3 3 3 3 3 3 3 138120 194450 2092.4 233970 256930 254190 150270 140920 132880 132580 145800 128620 181590 15065 236200 243810 255160 157460 148750 136410 129830 140250 1 1 1 1 1 1 1 1 1 1 1 397470 680920 4159.2 717710 425740 371990 406460 498940 501780 450740 540840 370110 635510 36773 724410 407960 403140 416250 499440 507690 442210 520520 2 2 1 2 2 2 2 2 2 2 2 163610000 58886000 104730000 180 1237 171 901;902;903;904;905 1091;1092;1093;1094;1095 1094 5 AALTIDEK Unmodified 859.4651 0.46509784 45 CON__P34955 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 43.058 43.005 2 0.00042542 14265 20211116_3441_TMUAki_TMT10x_S_F3 145.63 93.779 + 17420000 26219000 86876 26540000 29556000 34047000 25863000 36355000 43490000 30441000 28190000 16220000 24466000 1591300 27164000 28245000 34274000 26973000 36670000 42929000 29974000 27668000 8 8 4 8 8 8 8 8 8 8 8 11408000 17100000 45916 16687000 21868000 28987000 20600000 23177000 27118000 19242000 17802000 10622000 15954000 1062300 17237000 20934000 28641000 21164000 23740000 26972000 18955000 17461000 5 5 2 5 5 5 5 5 5 5 5 6012200 9119200 40960 9852300 7687700 5059600 5263100 13179000 16372000 11199000 10388000 5598100 8512000 528990 9927500 7310800 5632500 5809200 12930000 15957000 11019000 10206000 3 3 2 3 3 3 3 3 3 3 3 1031200000 602490000 428730000 181 45 172 906;907;908;909;910;911 1096;1097;1098;1099;1100;1101;1102;1103;1104 1102 9 AALTTLFK Acetyl (Protein N-term) 905.52222 0.52221879 2511 Q96KP4;Q96KP4-2 CNDP2 Cytosolic non-specific dipeptidase yes no 1 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 80.052 80.062 2 0.0010265 27841 20211116_3435_TMUAki_TMT10x_P_F7 68.915 68.915 12945000 22651000 16560 20927000 14141000 18824000 15965000 12140000 11910000 13608000 15660000 12052000 21129000 973630 21440000 13598000 19157000 15974000 12725000 12427000 13230000 14990000 5 5 1 5 5 5 5 5 5 5 5 6715600 11254000 16560 10791000 7317400 12838000 8313300 6605900 6163900 7378800 7958900 6252400 10499000 507770 11072000 7037600 12812000 8313900 7054100 6428500 7174700 7622100 3 3 1 3 3 3 3 3 3 3 3 6229100 11397000 0 10136000 6824100 5986100 7652200 5534200 5746500 6229600 7700900 5799400 10630000 465860 10368000 6560300 6344100 7659600 5670400 5998800 6055500 7368300 2 2 0 2 2 2 2 2 2 2 2 2263200000 1098100000 1165100000 182 2511 173 912;913;914;915;916 1105;1106;1107;1108;1109 1106 5 AALVGGTTMIIDHVVPEPGSSLLTSFEK Oxidation (M) 2884.4892 0.48921069 1691 Q14194-2;Q14194 CRMP1 Dihydropyrimidinase-related protein 1 yes no 0 0 1 0 By MS/MS By matching 7.67 0.471 1 2 2 1 79.095 79.108 4 1.3946E-12 25942 20211116_3436_TMUAki_TMT10x_P_F8 103.29 90.608 3762400 6086700 0 4951800 2962200 6017800 3930900 3548100 3506100 3581200 4086500 3502800 5675300 254490 5147800 2861600 6009200 3923500 3733000 3606000 3496200 3924100 1 1 0 1 1 1 1 1 1 1 1 3762400 6086700 0 4951800 2962200 6017800 3930900 3548100 3506100 3581200 4086500 3502800 5675300 254490 5147800 2861600 6009200 3923500 3733000 3606000 3496200 3924100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1962000000 1735200000 226840000 183 1691 174 917;918;919 1110 1110 2261 1 AALVGGTTMIIDHVVPEPGSSLLTSFEK Unmodified 2868.4943 0.49429607 1691 Q14194-2;Q14194 CRMP1 Dihydropyrimidinase-related protein 1 yes no 0 0 0 0 By MS/MS 8 0 1 1 79.638 79.624 4 5.6014E-13 25664 20211116_3447_TMUAki_TMT10x_S_F8 115.11 101.79 1952900 3441600 72436 3700300 2995400 2187000 2815900 1132200 998370 1363700 2312300 1818900 3212300 244020 3734000 2872000 2297600 2809400 1211300 1141800 1322300 2189900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1952900 3441600 72436 3700300 2995400 2187000 2815900 1132200 998370 1363700 2312300 1818900 3212300 244020 3734000 2872000 2297600 2809400 1211300 1141800 1322300 2189900 1 1 1 1 1 1 1 1 1 1 1 441940000 0 441940000 184 1691 174 920 1111 1111 1 AALVGGTTMIIGHVLPDKETSLVDAYEK Oxidation (M) 2943.5263 0.52632448 2617 Q9BPU6 DPYSL5 Dihydropyrimidinase-related protein 5 yes yes 0 0 1 1 By MS/MS By MS/MS 6 2.92 1 1 2 2 2 74.892 74.905 4 6.4933E-42 23743 20211116_3447_TMUAki_TMT10x_S_F8 180.83 168.75 28285000 49599000 75598 41447000 32413000 57134000 35086000 40654000 39238000 40657000 38697000 26334000 46251000 2173000 43093000 31132000 56866000 35578000 42166000 39717000 39708000 37347000 7 7 3 7 7 7 7 7 7 7 7 20354000 34546000 60988 29808000 21001000 45090000 24339000 28170000 26549000 27658000 27042000 18950000 32217000 1501800 30973000 20208000 44612000 24582000 29480000 26930000 27034000 26072000 4 4 2 4 4 4 4 4 4 4 4 7930700 15053000 14610 11639000 11412000 12044000 10747000 12484000 12688000 12999000 11655000 7384000 14033000 671150 12121000 10923000 12254000 10996000 12686000 12787000 12674000 11275000 3 3 1 3 3 3 3 3 3 3 3 4971100000 3093100000 1878000000 185 2617 175 921;922;923;924 1112;1113;1114;1115;1116;1117;1118 1118 2863 7 AALVGGTTMIIGHVLPDKETSLVDAYEK Unmodified 2927.5314 0.53140985 2617 Q9BPU6 DPYSL5 Dihydropyrimidinase-related protein 5 yes yes 0 0 0 1 By MS/MS 7.5 0.5 1 1 2 77.074 77.076 4 2.8151E-09 24619 20211116_3447_TMUAki_TMT10x_S_F8 97.542 90.266 7720600 13177000 75674 13743000 9677300 5492100 10528000 5072200 3906600 4557300 7937200 7189200 12298000 738020 13857000 9305000 6094500 10430000 5162900 4407100 4472100 7531900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7720600 13177000 75674 13743000 9677300 5492100 10528000 5072200 3906600 4557300 7937200 7189200 12298000 738020 13857000 9305000 6094500 10430000 5162900 4407100 4472100 7531900 1 1 1 1 1 1 1 1 1 1 1 3437000000 0 3437000000 186 2617 175 925;926 1119 1119 1 AALYRPGLR Acetyl (Protein N-term) 1057.6033 0.60326308 1865 Q16822;Q16822-2 PCK2 Phosphoenolpyruvate carboxykinase [GTP], mitochondrial yes no 1 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 38.409 38.68 2 0.0014268 9484 20211116_3436_TMUAki_TMT10x_P_F8 51.787 21.119 608310 954500 11563 998060 1222300 1260200 778870 709210 760220 657980 742210 566480 890810 69809 1019000 1161500 1255200 812650 747350 773570 644730 716540 1 1 1 1 1 1 1 1 1 1 1 608310 954500 11563 998060 1222300 1260200 778870 709210 760220 657980 742210 566480 890810 69809 1019000 1161500 1255200 812650 747350 773570 644730 716540 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34647000 34647000 0 187 1865 176 927;928;929 1120;1121;1122 1121 3 AAMEALVVEVTK Oxidation (M) 1275.6744 0.67443869 1546 Q08211;Q08211-2 DHX9 ATP-dependent RNA helicase A yes no 0 0 1 0 By MS/MS By MS/MS 4.25 0.433 3 1 2 2 56.047 56.199 2;3 1.9295E-05 16956 20211116_3431_TMUAki_TMT10x_P_F4 106.29 86.529 6011600 9357100 60887 10329000 8497300 12263000 6710300 6832300 6559200 7528600 7706800 5597600 8734800 568400 10497000 8105000 12252000 6895300 7241600 6720200 7324100 7399000 2 2 1 2 2 2 2 2 2 2 2 6011600 9357100 60887 10329000 8497300 12263000 6710300 6832300 6559200 7528600 7706800 5597600 8734800 568400 10497000 8105000 12252000 6895300 7241600 6720200 7324100 7399000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 543350000 543350000 0 188 1546 178 930;931;932;933 1123;1124;1125;1126;1127 1124 2074 5 AAMEALVVEVTK Unmodified 1259.6795 0.67952407 1546 Q08211;Q08211-2 DHX9 ATP-dependent RNA helicase A yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 2 4 3 3 75.692 75.695 2;3 7.485E-06 25397 20211116_3442_TMUAki_TMT10x_S_F4 113.38 97.176 21698000 34610000 203040 38060000 28211000 25181000 23975000 18692000 16141000 18207000 26391000 20204000 32308000 2052700 38392000 26954000 26301000 24298000 19317000 17127000 17802000 25141000 5 5 4 5 5 5 5 5 5 5 5 8611600 14156000 99016 14656000 9173000 13420000 9432800 7647700 6767200 7692900 10635000 8018900 13211000 814100 14898000 8808000 13618000 9472000 8068300 7138300 7511400 10140000 2 2 2 2 2 2 2 2 2 2 2 13086000 20454000 104020 23404000 19038000 11761000 14542000 11044000 9373500 10514000 15755000 12185000 19097000 1238600 23493000 18146000 12683000 14826000 11249000 9988500 10290000 15001000 3 3 2 3 3 3 3 3 3 3 3 1335600000 745400000 590240000 189 1546 178 934;935;936;937;938;939 1128;1129;1130;1131;1132 1130 5 AAMEALVVEVTKQPAIISQLDPVNER Oxidation (M) 2836.5004 0.50044408 1546 Q08211;Q08211-2 DHX9 ATP-dependent RNA helicase A yes no 0 0 1 1 By MS/MS 5 0 1 1 77.148 77.172 4 0.0045088 25812 20211116_3433_TMUAki_TMT10x_P_F5 50.857 42.149 3592300 6059700 129030 5131900 3515400 7785400 4039500 3843500 3582700 4126900 4603900 3345800 5650800 417010 5340600 3391700 7679000 4055900 4115200 3701000 4018900 4409600 1 1 1 1 1 1 1 1 1 1 1 3592300 6059700 129030 5131900 3515400 7785400 4039500 3843500 3582700 4126900 4603900 3345800 5650800 417010 5340600 3391700 7679000 4055900 4115200 3701000 4018900 4409600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1804000000 1804000000 0 190 1546 179 940 1133 1133 2074 1 AAMEALVVEVTKQPAIISQLDPVNER Unmodified 2820.5055 0.50552945 1546 Q08211;Q08211-2 DHX9 ATP-dependent RNA helicase A yes no 0 0 0 1 By MS/MS By MS/MS 7 0.577 1 4 1 2 4 79.805 79.821 3;4 8.7504E-24 27744 20211116_3435_TMUAki_TMT10x_P_F7 155.73 136.7 8017500 12739000 157200 11987000 9793500 9328100 9566700 5455100 5139100 6639600 8822900 7466100 11884000 821940 12242000 9393300 9579800 9578700 5777300 5552600 6435800 8397100 3 3 2 3 3 3 3 3 3 3 3 3293700 5414100 0 4825600 3219200 5583500 3910100 2776200 2569800 2848200 3634800 3066600 5049700 257880 4975800 3103200 5578300 3888600 2966500 2710800 2778700 3473400 1 1 0 1 1 1 1 1 1 1 1 4723800 7325200 157200 7161200 6574200 3744600 5656600 2678900 2569300 3791500 5188100 4399500 6834600 564060 7266100 6290100 4001500 5690200 2810800 2841800 3657100 4923700 2 2 2 2 2 2 2 2 2 2 2 3250600000 1174500000 2076100000 191 1546 179 941;942;943;944;945;946 1134;1135;1136 1134 3 AAMEPIVISAK Oxidation (M) 1144.6162 0.61619553 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 1 0 By MS/MS 5 0 1 1 46.834 46.997 3 0.039432 12312 20211116_3444_TMUAki_TMT10x_S_F5 51.286 28.753 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 192 3293 180 947 1137 1137 3261 1 AANAAENDFSVSQAEMSSR Oxidation (M) 1999.8541 0.85414698 2241 Q8NE71;Q8NE71-2 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 1 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 40.588 40.455 3 5.7382E-09 10195 20211116_3440_TMUAki_TMT10x_S_F2 117.17 107.64 1546000 2534900 16823 3519100 2849000 2634500 1648400 2962700 3563700 2178300 2601400 1439400 2369000 139150 3507300 2701100 2745800 1794200 2972200 3507500 2159800 2539200 6 6 4 6 6 6 6 6 6 6 6 537970 943100 8677.7 1241100 2041200 1920300 878830 1121000 1320300 759820 947470 500910 881130 67175 1255200 1928000 1896400 965880 1169300 1310700 756960 925540 2 2 1 2 2 2 2 2 2 2 2 1008000 1591800 8145.8 2278000 807870 714190 769620 1841700 2243400 1418500 1653900 938520 1487900 71974 2252100 773090 849370 828280 1802900 2196800 1402800 1613700 4 4 3 4 4 4 4 4 4 4 4 733440000 526040000 207400000 193 2241 181 948;949;950;951;952 1138;1139;1140;1141;1142;1143 1141 2636 6 AANAAENDFSVSQAEMSSR Unmodified 1983.8592 0.85923236 2241 Q8NE71;Q8NE71-2 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 46.335 46.161 3 1.6794E-31 14411 20211116_3430_TMUAki_TMT10x_P_F3 183.71 177.27 1066600 1754800 30701 2220800 1646700 1653700 1221700 1556500 1436300 1205100 1558200 993300 1639100 125160 2224200 1570100 1717500 1268100 1576900 1456100 1191500 1499400 2 2 2 2 2 2 2 2 2 2 2 548300 864940 1924.5 1081100 1277000 1272700 861620 782240 700480 599840 751560 510540 807890 57458 1090500 1214100 1273700 890710 814620 721480 593350 723420 1 1 1 1 1 1 1 1 1 1 1 518250 889810 28776 1139700 369730 381010 360080 774240 735790 605270 806630 482760 831230 67705 1133700 356010 443790 377380 762290 734620 598100 775930 1 1 1 1 1 1 1 1 1 1 1 189150000 106150000 82996000 194 2241 181 953;954;955 1144;1145;1146 1145 3 AANATTNPSQLLPLELVDK Acetyl (Protein N-term) 2036.079 0.078985188 3307 Q9Y4Y9 LSM5 U6 snRNA-associated Sm-like protein LSm5 yes yes 1 0 0 0 By MS/MS By MS/MS 4.5 1.12 4 4 4 4 8 8 80.771 80.759 2;3 9.6004E-25 27005 20211116_3431_TMUAki_TMT10x_P_F4 147.87 130 87714000 152190000 447070 142850000 103840000 128370000 113430000 80246000 77413000 87238000 110200000 81664000 141970000 6137800 146170000 99754000 130590000 113440000 84227000 81493000 84913000 105290000 19 19 8 19 19 19 19 19 19 19 19 45087000 75744000 293120 71229000 42399000 75907000 52496000 41123000 39888000 45497000 53830000 41979000 70660000 2954300 73054000 40891000 76259000 52331000 43697000 41626000 44255000 51497000 11 11 4 11 11 11 11 11 11 11 11 42627000 76444000 153950 71623000 61444000 52465000 60930000 39123000 37524000 41740000 56367000 39685000 71312000 3183500 73121000 58863000 54330000 61106000 40530000 39867000 40658000 53792000 8 8 4 8 8 8 8 8 8 8 8 28261000000 11735000000 16526000000 195 3307 182 956;957;958;959;960;961;962;963;964;965;966;967;968;969;970;971 1147;1148;1149;1150;1151;1152;1153;1154;1155;1156;1157;1158;1159;1160;1161;1162;1163;1164;1165 1150 19 AANDAGYFNDEMAPIEVK Oxidation (M) 1969.8728 0.87275716 1019 P42765 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 58.879 58.695 3 2.8135E-08 17906 20211116_3440_TMUAki_TMT10x_S_F2 109.42 94.651 19096000 32629000 67763 35282000 29873000 38923000 22323000 29920000 32285000 28814000 28324000 17779000 30456000 1566300 35861000 28443000 39225000 23346000 30842000 32268000 28187000 27446000 9 9 2 9 9 9 9 9 9 9 9 11102000 18553000 41495 20865000 22720000 31168000 16027000 17467000 19178000 17095000 16391000 10337000 17321000 979630 21276000 21610000 30809000 16704000 18440000 19274000 16711000 15898000 5 5 1 5 5 5 5 5 5 5 5 7994000 14076000 26268 14418000 7153200 7754400 6295600 12453000 13107000 11719000 11933000 7442700 13136000 586640 14585000 6833100 8416300 6641600 12402000 12994000 11476000 11548000 4 4 1 4 4 4 4 4 4 4 4 2980800000 1776300000 1204500000 196 1019 183 972;973;974;975;976;977 1166;1167;1168;1169;1170;1171;1172;1173;1174 1171 1315 9 AANPVDFLSK Unmodified 1060.5553 0.55530983 2164 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 61.203 61.805 2 1.5411E-06 20107 20211116_3435_TMUAki_TMT10x_P_F7 154.35 107.26 9901000 16383000 168590 18321000 16371000 19816000 12668000 15927000 15876000 15220000 15348000 9220100 15295000 1068600 18576000 15614000 20008000 13143000 16368000 15992000 14894000 14822000 2 2 2 2 2 2 2 2 2 2 2 5622000 9027100 114350 10449000 11586000 15483000 8668700 9186600 9317900 8608100 9099300 5235500 8428600 656210 10635000 11043000 15321000 8965700 9640700 9443200 8430900 8784500 1 1 1 1 1 1 1 1 1 1 1 4279000 7356200 54236 7871400 4784600 4333800 3999700 6740200 6558600 6611700 6248700 3984600 6866100 412390 7940900 4571200 4687300 4177300 6727700 6549300 6462600 6037500 1 1 1 1 1 1 1 1 1 1 1 803190000 414500000 388690000 197 2164 184 978;979 1175;1176 1175 2 AANSLEAFIFETQDK Unmodified 1682.8152 0.81516593 3301 Q9Y4L1 HYOU1 Hypoxia up-regulated protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 78.43 78.368 3 9.6534E-06 27614 20211116_3430_TMUAki_TMT10x_P_F3 100.23 87.109 7977700 12576000 186080 12080000 9973800 11067000 10089000 7769200 7502100 7931700 9674500 7429400 11733000 862780 12343000 9577500 11263000 10147000 8070500 7822400 7739800 9265400 3 3 3 3 3 3 3 3 3 3 3 2474500 4237800 50761 3830300 2679700 4832700 3327900 2608600 2632400 2310100 3247700 2304400 3952800 255330 3951300 2588800 4811400 3320200 2755600 2730200 2268400 3113900 1 1 1 1 1 1 1 1 1 1 1 5503200 8337800 135320 8249200 7294100 6234400 6760900 5160600 4869700 5621600 6426800 5125000 7779700 607450 8391700 6988700 6451300 6827200 5314900 5092100 5471300 6151500 2 2 2 2 2 2 2 2 2 2 2 1827400000 785730000 1041600000 198 3301 185 980;981;982 1177;1178;1179 1177 3 AANVLITR Unmodified 856.51305 0.51305109 1143 P50750;P50750-2 CDK9 Cyclin-dependent kinase 9 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 36.035 36.463 2 0.0061151 7995 20211116_3447_TMUAki_TMT10x_S_F8 93.267 27.591 824250 1306100 842.92 1382100 1443100 1443900 997150 910960 981920 813470 1149600 767430 1219000 73442 1405600 1372300 1455100 1034300 950170 1005600 798500 1103800 3 3 1 3 3 3 3 3 3 3 3 553550 865500 842.92 933130 1175500 1201100 734240 613040 675190 553870 796400 515390 807860 52622 951170 1115900 1193900 766020 651210 693780 543370 764510 2 2 1 2 2 2 2 2 2 2 2 270710 440550 0 449020 267620 242730 262910 297910 306730 259600 353240 252040 411110 20820 454390 256390 261240 268280 298970 311780 255120 339310 1 1 0 1 1 1 1 1 1 1 1 59881000 36107000 23774000 199 1143 186 983;984;985 1180;1181;1182 1182 3 AAPAGGFQNIACLR Unmodified 1444.7245 0.7245172 3082 Q9UBP6 METTL1 tRNA (guanine-N(7)-)-methyltransferase yes yes 0 0 0 0 By MS/MS 1 0 1 1 53.702 53.413 3 0.010138 17478 20211116_3439_TMUAki_TMT10x_S_F1 58.754 42.617 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 200 3082 187 986 1183 1183 1 AAPCIYWLPLTDSQIVQK Unmodified 2102.087 0.087047453 3160 Q9UKV3;Q9UKV3-5;Q9UKV3-2;Q9UKV3-3 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 0 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 79.073 79.041 2;3 3.818E-12 27406 20211116_3429_TMUAki_TMT10x_P_F2 129.01 103.14 12989000 19727000 194880 19926000 13247000 19829000 15626000 9899100 8612000 10760000 14705000 12095000 18408000 1155800 20313000 12766000 19983000 15508000 10592000 9284400 10473000 13997000 4 4 2 4 4 4 4 4 4 4 4 11772000 17791000 194880 17880000 11351000 18666000 14173000 9172100 7875100 9847600 13366000 10962000 16601000 1097500 18246000 10963000 18754000 14034000 9824900 8482000 9589900 12724000 3 3 2 3 3 3 3 3 3 3 3 1217300 1936600 0 2046600 1896000 1162100 1452900 727040 736890 912400 1339700 1133000 1807500 58338 2066900 1803500 1228600 1474700 766710 802380 883470 1273700 1 1 0 1 1 1 1 1 1 1 1 4770500000 3555100000 1215400000 201 3160 188 987;988;989;990 1184;1185;1186;1187 1186 4 AAPDILIATPGR Unmodified 1193.6768 0.67682195 2476 Q96GQ7 DDX27 Probable ATP-dependent RNA helicase DDX27 yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 53.477 53.627 2 1.0118E-05 15325 20211116_3445_TMUAki_TMT10x_S_F6 110.18 84.729 5083700 8654800 0 10370000 4736900 3788200 4276100 7516400 6262000 5861100 7211300 4732500 8082200 303800 10359000 4523000 4348900 4423000 7404400 6317300 5792500 6927100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5083700 8654800 0 10370000 4736900 3788200 4276100 7516400 6262000 5861100 7211300 4732500 8082200 303800 10359000 4523000 4348900 4423000 7404400 6317300 5792500 6927100 1 1 0 1 1 1 1 1 1 1 1 389000000 0 389000000 202 2476 189 991;992;993 1188;1189 1189 2 AAPEASGTPSSDAVSRLEEEMR Oxidation (M) 2305.0492 0.049217977 883 P31146 CORO1A Coronin-1A yes yes 0 0 1 1 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 41.701 41.729 3 0.0017653 10798 20211116_3440_TMUAki_TMT10x_S_F2 60.398 42.383 1048800 1665200 19712 2133000 2717600 2700200 1492900 2192100 2331700 1713300 1928900 976680 1555600 128700 2151500 2576200 2704400 1604300 2240100 2321100 1693000 1873200 2 2 2 2 2 2 2 2 2 2 2 695410 1034600 8718.3 1406000 2404500 2410700 1315200 1393500 1535300 1145400 1265600 647560 966810 89716 1423200 2278700 2371000 1397800 1460700 1542700 1128900 1229300 1 1 1 1 1 1 1 1 1 1 1 353380 630570 10994 726990 313120 289550 177740 798600 796480 567870 663280 329120 588750 38980 728300 297500 333400 206520 779360 778470 564120 643970 1 1 1 1 1 1 1 1 1 1 1 175550000 104840000 70705000 203 883 190 994;995 1190;1191 1191 1056 2 AAPEEPQQRPPEAVAAAPAGTTSSR Unmodified 2488.2306 0.23062824 2508 Q96JP5;Q96JP5-2 ZFP91 E3 ubiquitin-protein ligase ZFP91 yes no 0 0 0 1 By MS/MS 4 0 1 1 33.276 33.303 3 2.318E-48 7701 20211116_3431_TMUAki_TMT10x_P_F4 206.03 183.13 95203 143230 4081.4 212940 537740 412920 172220 193380 298440 133450 202520 88674 133900 17895 215300 506670 403390 197710 205900 294690 132800 198340 1 1 1 1 1 1 1 1 1 1 1 95203 143230 4081.4 212940 537740 412920 172220 193380 298440 133450 202520 88674 133900 17895 215300 506670 403390 197710 205900 294690 132800 198340 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50757000 50757000 0 204 2508 191 996 1192 1192 1 AAPFSLEYR Unmodified 1052.5291 0.52909508 1777 Q15181 PPA1 Inorganic pyrophosphatase yes yes 0 0 0 0 By MS/MS By MS/MS 6 1.1 1 2 2 3 2 51.435 51.748 2 1.3443E-05 14507 20211116_3445_TMUAki_TMT10x_S_F6 158.56 92.89 35519000 63389000 232670 70166000 67351000 65480000 41600000 69585000 67463000 54767000 61897000 33073000 59174000 3509600 71032000 63939000 67088000 44344000 70099000 67303000 54099000 59882000 6 6 4 6 6 6 6 6 6 6 6 16042000 28262000 211310 30099000 47195000 50236000 27337000 31674000 32139000 26135000 28096000 14939000 26378000 1963300 30877000 44767000 49518000 28916000 32975000 32342000 25753000 27228000 3 3 3 3 3 3 3 3 3 3 3 19477000 35127000 21364 40067000 20155000 15244000 14264000 37911000 35324000 28632000 33801000 18134000 32796000 1546300 40155000 19173000 17570000 15428000 37124000 34960000 28346000 32654000 3 3 1 3 3 3 3 3 3 3 3 3146000000 1978500000 1167600000 205 1777 192 997;998;999;1000;1001 1193;1194;1195;1196;1197;1198 1196 6 AAPGAEFAPNK Unmodified 1071.5349 0.53490874 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 0 By MS/MS By MS/MS 4.83 0.898 3 1 2 1 5 40.042 40.204 2;3 1.1724E-05 10817 20211116_3442_TMUAki_TMT10x_S_F4 103.7 75.301 2820500 4716100 23847 5182900 2758100 2255400 2862300 2752200 3323900 2561300 3991500 2626300 4402300 250780 5210700 2648400 2489400 2912200 2767500 3385000 2509400 3829800 4 4 3 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2820500 4716100 23847 5182900 2758100 2255400 2862300 2752200 3323900 2561300 3991500 2626300 4402300 250780 5210700 2648400 2489400 2912200 2767500 3385000 2509400 3829800 4 4 3 4 4 4 4 4 4 4 4 198090000 0 198090000 206 1779 193 1002;1003;1004;1005;1006;1007 1199;1200;1201;1202;1203;1204;1205 1200 7 AAPGPALCLFDVDGTLTAPR Acetyl (Protein N-term) 2083.0408 0.040825542 181 O15305;O15305-2 PMM2 Phosphomannomutase 2 yes no 1 0 0 0 By MS/MS By MS/MS 4.29 1.03 2 2 2 1 3 4 81.549 81.537 2 8.4049E-25 29852 20211116_3441_TMUAki_TMT10x_S_F3 175.28 145.94 1700300 3186000 38835 3283100 2304200 2504200 2477500 1691900 1783000 2162300 2798100 1583400 2973300 183750 3330800 2216000 2580900 2482500 1775300 1880300 2092400 2667800 5 5 3 5 5 5 5 5 5 5 5 469160 725010 29345 826320 509990 731500 497210 409360 420920 519820 612300 437050 676890 66817 834410 490460 743810 502650 435770 438350 503130 584740 1 1 1 1 1 1 1 1 1 1 1 1231100 2461000 9489.9 2456800 1794200 1772700 1980300 1282500 1362000 1642500 2185800 1146300 2296400 116930 2496400 1725500 1837100 1979800 1339500 1441900 1589300 2083000 4 4 2 4 4 4 4 4 4 4 4 956090000 480570000 475520000 207 181 194 1008;1009;1010;1011;1012;1013;1014 1206;1207;1208;1209;1210;1211 1208 6 AAPGPGPSTFSFVPPSK Unmodified 1642.8355 0.83550744 941 P35658;P35658-3;P35658-4;P35658-2;P35658-5 NUP214 Nuclear pore complex protein Nup214 yes no 0 0 0 0 By MS/MS 2 0 1 1 62.983 62.746 3 0.020494 19533 20211116_3440_TMUAki_TMT10x_S_F2 42.314 29.334 5274800 8550600 225920 8981700 6247000 5549700 5424700 6008400 6025200 6116700 6985400 4913000 7980200 661480 9081100 5983000 5875600 5564100 6089000 6137400 5969500 6708800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5274800 8550600 225920 8981700 6247000 5549700 5424700 6008400 6025200 6116700 6985400 4913000 7980200 661480 9081100 5983000 5875600 5564100 6089000 6137400 5969500 6708800 1 1 1 1 1 1 1 1 1 1 1 357870000 0 357870000 208 941 195 1015 1212 1212 1 AAPKPPFQSHFCVVSKPK Unmodified 2024.0666 0.066586783 587 P09884 POLA1 DNA polymerase alpha catalytic subunit yes yes 0 0 0 2 By MS/MS 5 0 1 1 43.289 43.392 5 2.239E-08 12034 20211116_3433_TMUAki_TMT10x_P_F5 115.98 101.94 12115000 19035000 40702 21570000 23942000 25740000 13663000 11437000 9418000 10426000 14435000 11281000 17771000 1185900 21888000 22699000 25643000 14265000 12320000 9945000 10225000 13770000 3 3 1 3 3 3 3 3 3 3 3 12115000 19035000 40702 21570000 23942000 25740000 13663000 11437000 9418000 10426000 14435000 11281000 17771000 1185900 21888000 22699000 25643000 14265000 12320000 9945000 10225000 13770000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 396810000 396810000 0 209 587 196 1016 1213;1214;1215 1215 3 AAPLAAPPPAPAAPPAVAPPAGPR Unmodified 2124.1844 0.18439373 2016 Q6SPF0 SAMD1 Atherin yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 55.724 55.423 3 1.6754E-06 16231 20211116_3428_TMUAki_TMT10x_P_F1 84.499 64.66 1016400 1679700 18379 1864400 953110 951620 814280 1344700 1439000 1257400 1357000 946510 1568100 100510 1875300 911510 1034600 852560 1344800 1433700 1231600 1311500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1016400 1679700 18379 1864400 953110 951620 814280 1344700 1439000 1257400 1357000 946510 1568100 100510 1875300 911510 1034600 852560 1344800 1433700 1231600 1311500 1 1 1 1 1 1 1 1 1 1 1 127940000 0 127940000 210 2016 197 1017;1018 1216;1217 1216 2 AAPLDSIHSLAAYYIDCIR Unmodified 2148.0674 0.067374644 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 78.992 78.964 3 8.5435E-32 26066 20211116_3440_TMUAki_TMT10x_S_F2 191.37 176.9 5617500 9145200 0 8909900 6546800 6937300 6594800 4025800 3763000 4146400 5560600 5229500 8532600 357650 9076700 6270700 7123500 6599200 4243700 4015900 4044600 5308400 2 2 0 2 2 2 2 2 2 2 2 3150800 5143100 0 5120500 3643800 4512000 4144900 2076200 1930200 2157700 2853500 2932900 4799000 171750 5216300 3500200 4579400 4109600 2236300 2093300 2104000 2724100 1 1 0 1 1 1 1 1 1 1 1 2466700 4002100 0 3789400 2903000 2425300 2449900 1949600 1832800 1988700 2707100 2296600 3733600 185900 3860400 2770500 2544200 2489700 2007400 1922600 1940600 2584400 1 1 0 1 1 1 1 1 1 1 1 1940000000 503760000 1436300000 211 1092 198 1019;1020 1218;1219 1219 2 AAPLIPLSQQIPTGNSLYESYYK Acetyl (Protein N-term) 2594.3268 0.32682003 3074 Q9UBC2;Q9UBC2-2;Q9UBC2-4;Q9UBC2-3 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 yes no 1 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 80.958 80.972 3 1.98E-11 26184 20211116_3447_TMUAki_TMT10x_S_F8 88.755 85.914 5744800 10423000 35488 9652200 7511200 8206900 7568100 5561000 5183900 5956500 7327300 5348800 9723200 472560 9879700 7201600 8390300 7599800 5799400 5454100 5801200 7002100 4 4 2 4 4 4 4 4 4 4 4 2166700 3861900 2577.8 3889900 2165800 4311900 2762700 2348600 2223000 2395200 2736400 2017200 3603700 149910 3972600 2089700 4322500 2754400 2488300 2303400 2337300 2623800 2 2 1 2 2 2 2 2 2 2 2 3578100 6561400 32911 5762400 5345400 3895000 4805300 3212400 2960800 3561400 4590900 3331600 6119500 322650 5907100 5111900 4067800 4845400 3311100 3150700 3463800 4378200 2 2 1 2 2 2 2 2 2 2 2 2645900000 1329600000 1316300000 212 3074 199 1021;1022;1023;1024 1220;1221;1222;1223 1223 4 AAPPGEYFSVGSQVSCR Acetyl (Protein N-term) 1852.8414 0.84139745 1885 Q3MHD2;Q3MHD2-2 LSM12 Protein LSM12 homolog yes no 1 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 63.165 63.27 2 4.7899E-30 20270 20211116_3442_TMUAki_TMT10x_S_F4 148.13 136.96 2808400 4968100 0 4629700 3139200 6543500 3955300 4103500 3940600 3909800 3877300 2614400 4634500 168630 4775500 3026000 6493200 3968900 4289500 4007300 3826500 3742200 2 2 0 2 2 2 2 2 2 2 2 2808400 4968100 0 4629700 3139200 6543500 3955300 4103500 3940600 3909800 3877300 2614400 4634500 168630 4775500 3026000 6493200 3968900 4289500 4007300 3826500 3742200 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 624030000 624030000 0 213 1885 200 1025;1026 1224;1225;1226 1226 3 AAPREEPLTPR Unmodified 1235.6622 0.66223452 184 O15357;O15357-2 INPPL1 Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2 yes no 0 0 0 1 By MS/MS 3 0 1 1 29.15 28.877 3 0.0020602 8650 20211116_3441_TMUAki_TMT10x_S_F3 75.739 54.951 182820 282920 0 235510 197940 184140 184570 153000 167060 155090 238360 170200 263820 12249 242840 189260 190060 187380 157190 173250 151380 227730 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 182820 282920 0 235510 197940 184140 184570 153000 167060 155090 238360 170200 263820 12249 242840 189260 190060 187380 157190 173250 151380 227730 1 1 0 1 1 1 1 1 1 1 1 6353200 0 6353200 214 184 201 1027 1227 1227 1 AAPRPAPVAQPPAAAPPSAVGSSAAAPR Unmodified 2532.3561 0.35610352 3351 Q9Y6H1;Q5T1J5 CHCHD2;CHCHD2P9 Coiled-coil-helix-coiled-coil-helix domain-containing protein 2;Putative coiled-coil-helix-coiled-coil-helix domain-containing protein CHCHD2P9, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 2.14 1.77 6 5 2 1 7 7 34.595 34.505 3;4;5 1.574E-52 10295 20211116_3429_TMUAki_TMT10x_P_F2 213.39 197.97 7680400 12860000 73332 15375000 11147000 12226000 8570900 11258000 12627000 10481000 12368000 7151600 12009000 603050 15460000 10626000 12627000 8954100 11472000 12659000 10269000 11939000 23 23 8 23 23 23 23 23 23 23 23 2830300 4375700 43527 5131700 7066000 7327000 4310100 4003900 4446300 3614300 4441700 2635500 4085800 298440 5214600 6707100 7254200 4520300 4226900 4517200 3545900 4284900 12 12 6 12 12 12 12 12 12 12 12 4850100 8484500 29805 10243000 4080800 4898700 4260800 7254600 8180500 6867000 7926000 4516100 7923500 304610 10245000 3919100 5373100 4433800 7245400 8141700 6722700 7653800 11 11 2 11 11 11 11 11 11 11 11 18455000000 12681000000 5774100000 215 3351 202 1028;1029;1030;1031;1032;1033;1034;1035;1036;1037;1038;1039;1040;1041 1228;1229;1230;1231;1232;1233;1234;1235;1236;1237;1238;1239;1240;1241;1242;1243;1244;1245;1246;1247;1248;1249;1250 1235 23 AAPSDGFKPR Acetyl (Protein N-term) 1086.5458 0.54580778 2383 Q92979 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes yes 1 0 0 1 By MS/MS By MS/MS 4 0.816 1 1 1 1 2 35.658 35.645 2 0.00021362 8695 20211116_3431_TMUAki_TMT10x_P_F4 109.71 91.729 2430100 4064800 34134 4007200 4874300 4869600 3316300 3179300 3703400 2923800 3633900 2262900 3792700 265410 4105000 4636500 4869600 3457400 3310200 3748200 2866100 3507600 3 3 2 3 3 3 3 3 3 3 3 1522900 2549200 23475 2509400 3632000 3879800 2198000 2008700 2374100 1874500 2311500 1418100 2378500 177670 2583400 3447900 3825900 2309900 2132700 2405300 1836200 2231800 1 1 1 1 1 1 1 1 1 1 1 907240 1515600 10659 1497700 1242300 989810 1118400 1170600 1329300 1049300 1322400 844790 1414200 87734 1521600 1188500 1043700 1147400 1177500 1342900 1029800 1275900 2 2 1 2 2 2 2 2 2 2 2 150910000 93172000 57742000 216 2383 203 1042;1043;1044 1251;1252;1253 1251 3 AAPSGGVNCEEFAEFQELLK Acetyl (Protein N-term) 2237.031 0.031048717 1900 Q4VC31 CCDC58 Coiled-coil domain-containing protein 58 yes yes 1 0 0 0 By MS/MS By MS/MS 1.67 0.745 3 2 1 3 3 81.481 81.465 2;3 1.1495E-07 26907 20211116_3428_TMUAki_TMT10x_P_F1 100.55 76.17 12409000 19684000 36114 19045000 13532000 16140000 14737000 11046000 11702000 12833000 15286000 11554000 18365000 989420 19431000 13002000 16507000 14791000 11541000 12165000 12460000 14635000 5 5 2 5 5 5 5 5 5 5 5 5897800 8381600 12669 8742700 4957600 8949600 6129700 4968600 5232900 5924300 7167400 5491500 7822300 486310 8896600 4783700 9015000 6128600 5281200 5431500 5746600 6854300 2 2 1 2 2 2 2 2 2 2 2 6511700 11302000 23445 10302000 8574800 7190200 8607000 6076900 6469200 6908900 8118200 6062500 10543000 503110 10534000 8218500 7491800 8662500 6259700 6733300 6713400 7780300 3 3 1 3 3 3 3 3 3 3 3 4205800000 2524300000 1681500000 217 1900 204 1045;1046;1047;1048;1049;1050 1254;1255;1256;1257;1258;1259 1255 6 AAPVDLELKK Acetyl (Protein N-term) 1124.6441 0.64412484 301 O60925 PFDN1 Prefoldin subunit 1 yes yes 1 0 0 1 By MS/MS 4 0 1 1 56.85 56.994 2 0.0026773 17237 20211116_3431_TMUAki_TMT10x_P_F4 66.435 31.335 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 218 301 205 1051 1260 1260 1 AAPVLLR Unmodified 738.47521 0.47520902 2175 Q8N0U8;Q8N0U8-2 VKORC1L1 Vitamin K epoxide reductase complex subunit 1-like protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 2 3 38.963 39.34 2 0.0021801 11352 20211116_3446_TMUAki_TMT10x_S_F7 128.89 18.722 3853500 6164100 35576 6510800 6041400 6212700 4144000 4248800 4766600 4078300 4930200 3588200 5753100 379210 6613200 5746900 6303300 4321900 4413900 4827800 3990100 4750900 5 5 4 5 5 5 5 5 5 5 5 2336600 3534400 24604 3923700 4524200 4633400 2430200 2464000 2857200 2355600 2876400 2175800 3299400 247290 3985900 4286900 4627700 2587700 2611400 2888700 2305100 2774100 2 2 2 2 2 2 2 2 2 2 2 1516900 2629700 10972 2587200 1517100 1579300 1713800 1784800 1909400 1722700 2053800 1412400 2453700 131920 2627300 1460000 1675600 1734200 1802500 1939000 1685000 1976800 3 3 2 3 3 3 3 3 3 3 3 183660000 90529000 93130000 219 2175 206 1052;1053;1054;1055;1056 1261;1262;1263;1264;1265 1264 5 AAQAPSSFQLLYDLK Unmodified 1650.8617 0.86172219 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 6.41 2.61 4 1 5 12 15 7 80.859 80.853 2;3 7.3148E-38 24904 20211116_3447_TMUAki_TMT10x_S_F8 252.42 227.65 109180000 176550000 829700 158450000 120320000 161620000 132760000 107010000 106180000 115680000 128480000 101660000 164670000 9395100 162970000 115690000 163230000 133190000 111820000 109980000 112620000 123250000 21 21 10 21 21 21 21 21 21 21 21 57161000 91632000 263600 80887000 55173000 104690000 68449000 56658000 55361000 60612000 65557000 53221000 85462000 4493100 83632000 53222000 104100000 68331000 60148000 57255000 59034000 62925000 14 14 6 14 14 14 14 14 14 14 14 52016000 84914000 566100 77565000 65146000 56936000 64314000 50352000 50822000 55069000 62921000 48436000 79207000 4902000 79339000 62470000 59127000 64862000 51668000 52722000 53589000 60323000 7 7 4 7 7 7 7 7 7 7 7 22437000000 12243000000 10194000000 220 629 207 1057;1058;1059;1060;1061;1062;1063;1064;1065;1066;1067;1068;1069;1070;1071;1072;1073;1074;1075;1076;1077;1078 1266;1267;1268;1269;1270;1271;1272;1273;1274;1275;1276;1277;1278;1279;1280;1281;1282;1283;1284;1285;1286;1287;1288;1289 1289 24 AAQDLCEEALR Unmodified 1274.5925 0.59249998 395 O94906;O94906-2 PRPF6 Pre-mRNA-processing factor 6 yes no 0 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 3 1 42.027 42.074 2 1.99E-30 11106 20211116_3440_TMUAki_TMT10x_S_F2 274.5 189.12 1183100 1741300 3878 2394600 2755200 2047400 1305800 1476700 1845300 1199400 1880700 1101600 1627300 119750 2391500 2605300 2094300 1417000 1522000 1855000 1182900 1813100 3 3 2 3 3 3 3 3 3 3 3 671890 962370 3878 1300300 2317200 1669200 865070 792210 1010600 652650 1022000 625630 899250 82362 1308200 2185600 1658100 957910 845550 1022100 643160 985490 2 2 2 2 2 2 2 2 2 2 2 511240 778940 0 1094300 437990 378150 440710 684530 834770 546800 858730 475990 728020 37384 1083300 419780 436290 459090 676400 832840 539710 827650 1 1 0 1 1 1 1 1 1 1 1 69196000 35546000 33650000 221 395 208 1079;1080;1081;1082 1290;1291;1292;1293;1294 1294 5 AAQDRDQIYR Unmodified 1234.6054 0.60544792 1389 P62995;P62995-3 TRA2B Transformer-2 protein homolog beta yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 27.204 26.943 2;3 1.0893E-09 7934 20211116_3441_TMUAki_TMT10x_S_F3 181.4 137.63 566070 955060 0 793710 767510 767520 703630 513670 568500 537510 714920 527030 890570 41617 820720 733960 777810 712880 535790 589460 523980 685120 4 4 0 4 4 4 4 4 4 4 4 254000 383240 0 339170 354330 457070 274420 228860 244660 243560 297750 236470 357430 18912 350890 337510 453230 281610 244650 252080 237260 285580 2 2 0 2 2 2 2 2 2 2 2 312070 571830 0 454530 413170 310450 429210 284810 323840 293960 417170 290560 533140 22705 469830 396450 324570 431260 291140 337380 286720 399540 2 2 0 2 2 2 2 2 2 2 2 44959000 16884000 28075000 222 1389 209 1083;1084;1085;1086 1295;1296;1297;1298 1297 4 AAQEEYVK Unmodified 936.45526 0.45526144 482 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 By matching By MS/MS 2.5 0.5 1 1 1 1 33.929 33.698 2 0.00047048 10499 20211116_3441_TMUAki_TMT10x_S_F3 158.07 113.94 729600 1165700 3495.7 1094100 529610 478810 720700 271900 379580 326610 644020 679360 1087500 60946 1112000 512830 521080 710480 288530 410470 316730 613080 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 729600 1165700 3495.7 1094100 529610 478810 720700 271900 379580 326610 644020 679360 1087500 60946 1112000 512830 521080 710480 288530 410470 316730 613080 1 1 1 1 1 1 1 1 1 1 1 37518000 17850000 19668000 223 482 210 1087;1088 1299 1299 1 AAQEEYVKR Unmodified 1092.5564 0.55637247 482 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 29.795 29.644 3 3.4366E-06 6216 20211116_3431_TMUAki_TMT10x_P_F4 160.53 114.53 2032500 3309500 8445.4 2172600 2434800 3258200 2303500 1765100 1780100 1764800 2311500 1892500 3083900 180090 2312900 2331700 3218700 2327200 1869900 1852700 1723600 2213400 3 3 2 3 3 3 3 3 3 3 3 1408700 2218700 2507.9 1474500 1513800 2505600 1470200 1180300 1264100 1190900 1566900 1311600 2067500 118690 1572200 1450500 2459100 1487200 1267200 1305700 1162600 1502100 2 2 1 2 2 2 2 2 2 2 2 623750 1090800 5937.5 698070 920930 752650 833350 584790 516020 573940 744650 580820 1016400 61409 740700 881190 759610 840050 602720 546960 560980 711260 1 1 1 1 1 1 1 1 1 1 1 203800000 131030000 72772000 224 482 211 1089;1090;1091 1300;1301;1302 1301 3 AAQGEPQVQFK Acetyl (Protein N-term) 1243.6197 0.619701 1368 P62826 RAN GTP-binding nuclear protein Ran yes yes 1 0 0 0 By MS/MS By MS/MS 2.75 0.924 1 4 4 3 6 6 50.853 50.742 2;3 1.135E-11 17505 20211116_3441_TMUAki_TMT10x_S_F3 119.27 104.19 34719000 54703000 427000 76672000 78078000 64984000 39801000 57281000 71434000 45396000 61264000 32327000 51126000 3463000 76491000 73901000 66749000 43352000 58273000 70927000 44826000 59414000 15 15 9 15 15 15 15 15 15 15 15 17827000 27782000 310860 36664000 64599000 53003000 27469000 27925000 33976000 22675000 29571000 16600000 25956000 2196600 37020000 61011000 52424000 30006000 29501000 34123000 22362000 28663000 6 6 4 6 6 6 6 6 6 6 6 16892000 26921000 116130 40008000 13479000 11981000 12331000 29356000 37458000 22721000 31693000 15727000 25169000 1266400 39471000 12890000 14325000 13346000 28772000 36803000 22464000 30751000 9 9 5 9 9 9 9 9 9 9 9 11771000000 7370600000 4400700000 225 1368 212 1092;1093;1094;1095;1096;1097;1098;1099;1100;1101;1102;1103 1303;1304;1305;1306;1307;1308;1309;1310;1311;1312;1313;1314;1315;1316;1317 1313 15 AAQQQEEQEEKEEEDDEQTLHR Unmodified 2698.159 0.15903902 1425 P78318 IGBP1 Immunoglobulin-binding protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 32.002 32.017 4 1.2749E-55 6773 20211116_3428_TMUAki_TMT10x_P_F1 229.46 217.34 316140 413600 16377 1094600 2213100 928540 454500 641810 1230500 267160 956750 294450 388470 64335 1066100 2078600 949740 576990 655810 1208100 276360 931420 2 2 1 2 2 2 2 2 2 2 2 174070 188090 16377 520740 2106800 832390 342630 305260 571010 127160 467170 162190 176750 56763 512410 1976700 816920 446860 331640 567220 131520 453870 1 1 1 1 1 1 1 1 1 1 1 142070 225500 0 573830 106310 96151 111870 336550 659480 140010 489580 132260 211720 7572.2 553660 101840 132820 130140 324170 640920 144840 477540 1 1 0 1 1 1 1 1 1 1 1 144080000 88720000 55364000 226 1425 213 1104;1105 1318;1319 1318 2 AAQTELGQQILADFEEAFPSQGTK Unmodified 2578.2551 0.25511165 1946 Q5VIR6;Q5VIR6-2;Q5VIR6-3;Q5VIR6-1 VPS53 Vacuolar protein sorting-associated protein 53 homolog yes no 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 81.539 81.518 3 0.053935 29836 20211116_3441_TMUAki_TMT10x_S_F3 34.125 25.306 344310 612160 0 572330 463250 481460 437750 340680 425980 473760 527330 320540 571060 23864 585330 443130 492920 445000 357470 437480 457210 505560 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 344310 612160 0 572330 463250 481460 437750 340680 425980 473760 527330 320540 571060 23864 585330 443130 492920 445000 357470 437480 457210 505560 1 1 0 1 1 1 1 1 1 1 1 268530000 0 268530000 227 1946 214 1106;1107 1320 1320 1 AAQTGQVDGELIR Unmodified 1356.6997 0.69974224 399 O94964;O94964-2;O94964-4 SOGA1 Protein SOGA1;N-terminal form;C-terminal 80 kDa form yes no 0 0 0 0 By MS/MS 3 0 1 1 41.595 41.288 3 0.097021 13656 20211116_3441_TMUAki_TMT10x_S_F3 27.664 2.2268 62670000 105530000 0 98232000 78280000 58146000 79285000 63248000 70733000 63378000 72373000 58352000 98445000 0 100130000 75084000 61822000 80105000 64052000 72391000 61893000 69765000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 62670000 105530000 0 98232000 78280000 58146000 79285000 63248000 70733000 63378000 72373000 58352000 98445000 0 100130000 75084000 61822000 80105000 64052000 72391000 61893000 69765000 1 1 0 1 1 1 1 1 1 1 1 335420000 0 335420000 228 399 215 1108 1321 1321 1 AAREECPVFTPPGGETLDQVK Unmodified 2300.1107 0.11069602 2901 Q9NQ88 TIGAR Fructose-2,6-bisphosphatase TIGAR yes yes 0 0 0 1 By MS/MS 4 0 1 1 52.552 52.718 3 9.9556E-05 15473 20211116_3431_TMUAki_TMT10x_P_F4 66.644 50.521 2248000 3400200 54991 4392000 5029600 5198900 3702900 2362700 2432200 2375500 3000800 2093500 3176500 276580 4422600 4792600 5182800 3786100 2545700 2550100 2319500 2877100 1 1 1 1 1 1 1 1 1 1 1 2248000 3400200 54991 4392000 5029600 5198900 3702900 2362700 2432200 2375500 3000800 2093500 3176500 276580 4422600 4792600 5182800 3786100 2545700 2550100 2319500 2877100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 270800000 270800000 0 229 2901 216 1109 1322 1322 1 AAREPNIDR Unmodified 1040.5363 0.53630573 788 P23588;P23588-2 EIF4B Eukaryotic translation initiation factor 4B yes no 0 0 0 1 By MS/MS 3 0 1 1 26.097 25.797 3 0.00027824 7440 20211116_3441_TMUAki_TMT10x_S_F3 119.62 89.362 85312 165360 0 112880 95811 84024 96454 72493 83803 67872 116890 79421 154100 5617.4 118430 91780 87119 97412 74149 86982 66478 111730 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 85312 165360 0 112880 95811 84024 96454 72493 83803 67872 116890 79421 154100 5617.4 118430 91780 87119 97412 74149 86982 66478 111730 1 1 0 1 1 1 1 1 1 1 1 3101800 0 3101800 230 788 217 1110 1323 1323 1 AASAAAAELQASGGPR Acetyl (Protein N-term) 1468.727 0.72701962 2870 Q9HCN4 GPN1 GPN-loop GTPase 1 yes yes 1 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 51.515 51.257 2 5.0039E-29 16147 20211116_3429_TMUAki_TMT10x_P_F2 125.46 114.58 6290900 10649000 118790 11842000 8046700 9812200 6397300 7427100 8326800 7748300 8252600 5858300 9941000 656850 11966000 7681300 10068000 6635000 7681300 8384000 7554100 7963300 4 4 4 4 4 4 4 4 4 4 4 3022000 4746500 18004 5371000 5016000 6851600 3833900 3775300 4044900 3645500 3866100 2813900 4431300 295250 5457300 4781000 6819500 3957300 3989900 4099400 3565800 3735000 2 2 2 2 2 2 2 2 2 2 2 3268900 5902300 100780 6470900 3030700 2960600 2563400 3651700 4281900 4102800 4386500 3044400 5509600 361610 6508800 2900300 3248100 2677800 3691400 4284600 3988400 4228300 2 2 2 2 2 2 2 2 2 2 2 315480000 159900000 155580000 231 2870 218 1111;1112;1113 1324;1325;1326;1327 1324 4 AASAAAASAAAASAASGSPGPGEGSAGGEK Acetyl (Protein N-term) 2428.1102 0.11023833 1615 Q13263;Q13263-2 TRIM28 Transcription intermediary factor 1-beta yes no 1 0 0 0 By MS/MS By MS/MS 3.5 0.866 1 3 3 1 4 4 56.39 56.33 2;3 9.7679E-115 17032 20211116_3431_TMUAki_TMT10x_P_F4 162.77 153.76 11014000 17709000 104570 18507000 13087000 18399000 11602000 14309000 15431000 14893000 14765000 10254000 16527000 730110 18822000 12509000 18658000 11964000 14773000 15508000 14522000 14263000 8 8 5 8 8 8 8 8 8 8 8 5812300 9250500 60122 9134700 7950900 13278000 7447300 7424300 8376100 8097200 7785900 5411900 8631300 358160 9389000 7612000 13139000 7609200 7864100 8459600 7880400 7529100 5 5 3 5 5 5 5 5 5 5 5 5201300 8458000 44449 9372600 5136600 5121000 4154300 6884900 7055400 6796300 6978600 4842500 7895600 371940 9433400 4896700 5518900 4355000 6908400 7048000 6641300 6734400 3 3 2 3 3 3 3 3 3 3 3 16473000000 9075800000 7397100000 232 1615 219 1114;1115;1116;1117;1118;1119;1120;1121 1328;1329;1330;1331;1332;1333;1334;1335;1336 1332 9 AASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATK Unmodified 3668.7123 0.71233221 3163 Q9UKY7;Q9UKY7-2 CDV3 Protein CDV3 homolog yes no 0 0 0 1 By MS/MS 6.33 0.471 2 1 3 33.477 33.786 4;5;6 5.1534E-09 9509 20211116_3446_TMUAki_TMT10x_S_F7 77.84 71.745 71253 123680 0 149350 90854 61270 80867 84113 117630 65179 108300 66343 115510 0 149230 86864 67712 83687 83801 117730 64438 104760 4 5 0 5 5 4 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 71253 123680 0 149350 90854 61270 80867 84113 117630 65179 108300 66343 115510 0 149230 86864 67712 83687 83801 117730 64438 104760 4 5 0 5 5 4 5 5 5 5 5 13287000 0 13287000 233 3163 220 1122;1123;1124 1337;1338;1339;1340;1341 1340 5 AASADSTTEGTPADGFTVLSTK Unmodified 2126.0015 0.0015227276 327 O75367;O75367-2;O75367-3 H2AFY Core histone macro-H2A.1 yes no 0 0 0 0 By MS/MS By MS/MS 4.46 0.929 2 5 4 2 7 6 60.114 60.095 2;3 6.4198E-92 18972 20211116_3442_TMUAki_TMT10x_S_F4 310.36 294.82 30874000 54076000 205980 61058000 38057000 48484000 32266000 46056000 47364000 39252000 47295000 28746000 50485000 2060300 61608000 36334000 50114000 33499000 46746000 47522000 38616000 45626000 14 14 7 14 14 14 14 14 14 14 14 12858000 23170000 128850 24045000 22560000 34293000 20661000 18237000 18145000 15298000 19721000 11972000 21623000 817670 24621000 21586000 33942000 20979000 19264000 18625000 15062000 18975000 6 6 3 6 6 6 6 6 6 6 6 18017000 30907000 77131 37013000 15497000 14191000 11605000 27820000 29219000 23954000 27575000 16774000 28862000 1242600 36987000 14748000 16171000 12520000 27481000 28896000 23554000 26651000 8 8 4 8 8 8 8 8 8 8 8 17598000000 9713200000 7884600000 234 327 221 1125;1126;1127;1128;1129;1130;1131;1132;1133;1134;1135;1136;1137 1342;1343;1344;1345;1346;1347;1348;1349;1350;1351;1352;1353;1354;1355;1356;1357;1358 1354 17 AASAFFTYVSLSQEGR Unmodified 1732.842 0.84204938 64 O00154-4;O00154;O00154-6;O00154-7;O00154-5 ACOT7 Cytosolic acyl coenzyme A thioester hydrolase yes no 0 0 0 0 By MS/MS By MS/MS 2.33 0.667 1 4 4 5 4 76.862 76.772 2;3 2.1051E-107 26398 20211116_3429_TMUAki_TMT10x_P_F2 356.68 330.76 36660000 66181000 215160 55315000 44234000 63140000 48900000 44217000 41700000 45594000 48258000 34134000 61714000 3112100 57315000 42528000 63415000 49135000 45953000 42971000 44473000 46350000 11 11 6 11 11 11 11 11 11 11 11 19062000 33252000 93387 27861000 21428000 41534000 25057000 23524000 21625000 23324000 24323000 17749000 31008000 1618400 29008000 20638000 41064000 25120000 24821000 22246000 22788000 23380000 5 5 4 5 5 5 5 5 5 5 5 17598000 32929000 121780 27454000 22805000 21606000 23843000 20693000 20075000 22270000 23934000 16385000 30706000 1493700 28307000 21890000 22351000 24014000 21132000 20725000 21685000 22969000 6 6 2 6 6 6 6 6 6 6 6 6012900000 2298600000 3714200000 235 64 222 1138;1139;1140;1141;1142;1143;1144;1145;1146 1359;1360;1361;1362;1363;1364;1365;1366;1367;1368;1369;1370;1371 1360 13 AASAGQEPLHNEELAGAGR Unmodified 1876.9028 0.90275216 2491 Q96HY6;Q96HY6-2 DDRGK1 DDRGK domain-containing protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 33.046 32.815 3 2.8696E-24 8648 20211116_3429_TMUAki_TMT10x_P_F2 173.98 142.16 477220 797730 0 883320 895160 772360 572790 510990 615880 399960 725780 444260 744680 35317 893430 849560 787800 599200 529400 628570 395200 696730 2 2 0 2 2 2 2 2 2 2 2 253980 420060 0 486280 617780 559750 367720 265730 365150 225380 389640 236430 392210 20208 492510 585680 559090 385990 283810 372460 221780 375120 1 1 0 1 1 1 1 1 1 1 1 223240 377670 0 397040 277380 212620 205070 245250 250740 174580 336140 207830 352480 15110 400920 263880 228710 213200 245600 256110 173420 321620 1 1 0 1 1 1 1 1 1 1 1 79466000 52587000 26878000 236 2491 223 1147;1148 1372;1373 1372 2 AASAGVPYHGEVPVSLAR Unmodified 1779.9268 0.92678206 154 O15020;O15020-2 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 44.671 44.786 3 2.7319E-06 11355 20211116_3434_TMUAki_TMT10x_P_F6 95.814 67.009 4077200 6888200 28894 7946200 6508100 7397400 4456300 7518300 7815600 6254700 6598700 3796000 6431400 346950 8023500 6187000 7572600 4731500 7600200 7760900 6160700 6403200 4 4 2 4 4 4 4 4 4 4 4 2102100 3332000 28894 3958600 4581200 5733100 3018900 3709700 3794300 3125900 3069900 1957500 3111500 235930 4020700 4355100 5685600 3167900 3856400 3800500 3076900 2983900 2 2 2 2 2 2 2 2 2 2 2 1975100 3556200 0 3987600 1926900 1664300 1437400 3808600 4021300 3128800 3528800 1838600 3319900 111030 4002800 1831900 1887000 1563600 3743800 3960400 3083800 3419300 2 2 0 2 2 2 2 2 2 2 2 524530000 383330000 141200000 237 154 224 1149;1150 1374;1375;1376;1377 1375 4 AASCVLLHTGQK Acetyl (Protein N-term) 1325.6762 0.67617003 669 P14550 AKR1A1 Alcohol dehydrogenase [NADP(+)] yes yes 1 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 45.399 45.533 2 5.1451E-20 12854 20211116_3433_TMUAki_TMT10x_P_F5 121.73 41.567 6485300 10600000 32099 12485000 11390000 12673000 7113300 10390000 11174000 9337600 10086000 6038500 9897500 611620 12606000 10814000 12848000 7564700 10648000 11151000 9163000 9763000 5 5 2 5 5 5 5 5 5 5 5 3276000 5030000 10382 6097500 8307200 9583500 4390200 4894300 5327000 4477900 4882800 3050200 4697500 330980 6197100 7866100 9442600 4686900 5200300 5362500 4390500 4724000 2 2 1 2 2 2 2 2 2 2 2 3209300 5569600 21718 6387600 3083000 3089800 2723200 5495700 5846900 4859700 5203000 2988300 5200100 280630 6409300 2948100 3405200 2877700 5447200 5788600 4772400 5039000 3 3 1 3 3 3 3 3 3 3 3 1515100000 884200000 630920000 238 669 225 1151;1152;1153;1154 1378;1379;1380;1381;1382 1378 5 AASDIAMTELPPTHPIR Oxidation (M) 1834.9247 0.92473315 1342 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 1 0 By MS/MS By MS/MS 4.08 1.08 10 5 6 3 15 9 40.366 40.431 3;4 1.1045E-11 11657 20211116_3442_TMUAki_TMT10x_S_F4 138.28 127.34 50783000 80687000 602190 95534000 105210000 110380000 65359000 90394000 95261000 73513000 85285000 47287000 75345000 4144900 96634000 99895000 111080000 69305000 92410000 95250000 72492000 82580000 48 48 23 48 48 48 48 48 48 48 48 32292000 49886000 358170 58392000 89426000 94830000 50788000 58721000 58823000 47018000 51322000 30069000 46581000 3130200 59514000 84787000 93548000 53785000 61175000 59225000 46402000 49741000 29 29 15 29 29 29 29 29 29 29 29 18491000 30801000 244020 37142000 15780000 15549000 14571000 31673000 36438000 26495000 33963000 17218000 28765000 1014600 37120000 15108000 17534000 15520000 31234000 36025000 26090000 32839000 19 19 8 19 19 19 19 19 19 19 19 11850000000 8150400000 3699500000 239 1342 226 1155;1156;1157;1158;1159;1160;1161;1162;1163;1164;1165;1166;1167;1168;1169;1170;1171;1172;1173;1174;1175;1176;1177;1178 1383;1384;1385;1386;1387;1388;1389;1390;1391;1392;1393;1394;1395;1396;1397;1398;1399;1400;1401;1402;1403;1404;1405;1406;1407;1408;1409;1410;1411;1412;1413;1414;1415;1416;1417;1418;1419;1420;1421;1422;1423;1424;1425;1426;1427;1428;1429;1430;1431;1432;1433;1434;1435;1436 1421 1797 54 AASDIAMTELPPTHPIR Unmodified 1818.9298 0.92981853 1342 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 0 0 By MS/MS By MS/MS 4.45 1.16 3 3 2 3 6 5 48.831 48.895 3 1.3217E-21 14061 20211116_3431_TMUAki_TMT10x_P_F4 165.34 151.66 53284000 87968000 603520 101470000 92526000 87464000 60333000 66445000 67335000 57802000 76449000 49616000 82134000 4971400 102360000 87933000 89494000 63099000 68359000 68519000 56809000 73465000 26 26 16 26 26 26 26 26 26 26 26 29945000 47014000 396760 54713000 68568000 68020000 42541000 35195000 35795000 31278000 41960000 27884000 43898000 3265400 55472000 65107000 67736000 44303000 37323000 36929000 30709000 40287000 13 13 10 13 13 13 13 13 13 13 13 23339000 40954000 206750 46760000 23958000 19444000 17793000 31250000 31541000 26524000 34488000 21732000 38236000 1706000 46884000 22825000 21758000 18796000 31036000 31590000 26099000 33178000 13 13 6 13 13 13 13 13 13 13 13 7451800000 4292400000 3159400000 240 1342 226 1179;1180;1181;1182;1183;1184;1185;1186;1187;1188;1189 1437;1438;1439;1440;1441;1442;1443;1444;1445;1446;1447;1448;1449;1450;1451;1452;1453;1454;1455;1456;1457;1458;1459;1460;1461;1462;1463;1464;1465 1441 29 AASDIWKPVLSIDTEPR Unmodified 1896.9945 0.99452728 2507 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 0 0 0 1 By MS/MS 7 0 1 1 67.62 67.962 3 1.8334E-15 23209 20211116_3446_TMUAki_TMT10x_S_F7 150.45 129.51 7960800 13482000 170810 13877000 9349800 6683500 8562100 6551500 5084200 6595600 8997700 7413500 12582000 838650 14021000 8955600 7249400 8618400 6669100 5463400 6439800 8558600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7960800 13482000 170810 13877000 9349800 6683500 8562100 6551500 5084200 6595600 8997700 7413500 12582000 838650 14021000 8955600 7249400 8618400 6669100 5463400 6439800 8558600 2 2 2 2 2 2 2 2 2 2 2 694160000 0 694160000 241 2507 227 1190 1466;1467 1466 2 AASFRPGLVSETLSVR Unmodified 1688.921 0.9209684 3198 Q9UNS1;Q9UNS1-2 TIMELESS Protein timeless homolog yes no 0 0 0 1 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 51.936 51.739 3 1.2564E-35 15022 20211116_3440_TMUAki_TMT10x_S_F2 209.08 177.56 7987600 13560000 34345 14615000 12101000 13656000 10033000 8157600 7371600 7905800 10473000 7437200 12657000 707670 14821000 11550000 13848000 10202000 8564100 7725800 7731600 10007000 3 3 1 3 3 3 3 3 3 3 3 5186500 8684300 0 9348900 9417000 11260000 7692500 5244600 4811300 4951600 6819000 4828800 8105900 445060 9519100 8983300 11218000 7803800 5627200 5092000 4848100 6515800 2 2 0 2 2 2 2 2 2 2 2 2801200 4875900 34345 5266400 2684000 2395800 2340100 2913000 2560300 2954200 3653900 2608400 4551200 262600 5302100 2567000 2629400 2398500 2936900 2633900 2883600 3490900 1 1 1 1 1 1 1 1 1 1 1 1071000000 735570000 335420000 242 3198 228 1191;1192;1193;1194 1468;1469;1470 1470 3 AASGEAKPK Unmodified 857.46068 0.46068117 606;695;693 P10412;P16401;P16403 HIST1H1E;HIST1H1B;HIST1H1C Histone H1.4;Histone H1.5;Histone H1.2 no no 0 0 0 1 By MS/MS By MS/MS 4 1.15 1 1 1 3 4 2 26.071 26.023 2;3 0.00060009 5702 20211116_3433_TMUAki_TMT10x_P_F5 102.06 74.44 5170900 6566300 17025 4088100 2798200 6106800 2955700 3796600 3029900 2719700 4310200 4814800 6117800 411340 4375700 2688000 6044800 2992200 3944500 3124600 2700600 4118200 4 4 4 4 4 4 4 4 4 4 4 5170900 6566300 17025 4088100 2798200 6106800 2955700 3796600 3029900 2719700 4310200 4814800 6117800 411340 4375700 2688000 6044800 2992200 3944500 3124600 2700600 4118200 4 4 4 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 305790000 195970000 109820000 243 606;693;695 229 1195;1196;1197;1198;1199;1200 1471;1472;1473;1474;1475 1473 5 AASGESGTSGGGGSTEEAFMTFYSEVK Acetyl (Protein N-term) 2685.1388 0.13882084 370 O75937 DNAJC8 DnaJ homolog subfamily C member 8 yes yes 1 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 80.417 80.398 3 4.3794E-06 28368 20211116_3439_TMUAki_TMT10x_S_F1 56.625 42.464 6655700 12348000 29080 11508000 7423500 7966800 8803900 4443400 4800000 5569000 7517500 6197100 11519000 564800 11746000 7152800 8255300 8734100 4729200 5154900 5392600 7167700 3 3 2 3 3 3 3 3 3 3 3 2526800 4549800 10663 4206500 2342400 3826900 3492600 1603600 1670100 2169400 2691600 2352700 4244200 216840 4309900 2275500 3872100 3426200 1759600 1815000 2095500 2564900 1 1 1 1 1 1 1 1 1 1 1 4128900 7798400 18417 7301400 5081100 4139900 5311300 2839700 3129900 3399500 4825900 3844400 7274900 347960 7436500 4877300 4383300 5307900 2969600 3339800 3297100 4602800 2 2 1 2 2 2 2 2 2 2 2 1823900000 564400000 1259500000 244 370 230 1201;1202;1203 1476;1477 1477 2 AASIFGGAKPVDTAAR Unmodified 1530.8154 0.8154407 788 P23588;P23588-2 EIF4B Eukaryotic translation initiation factor 4B yes no 0 0 0 1 By MS/MS By MS/MS 4.14 3.09 2 2 1 2 3 4 45.837 45.76 3 1.8122E-35 12270 20211116_3428_TMUAki_TMT10x_P_F1 204.81 182.28 42820000 64458000 172070 84479000 90861000 78345000 47420000 65206000 73101000 50294000 69946000 39870000 60221000 4182700 84676000 86027000 79896000 51166000 66514000 73132000 49734000 67572000 11 11 5 11 11 11 11 11 11 11 11 22293000 32061000 101810 43217000 76106000 64243000 33561000 33499000 38949000 26484000 36228000 20757000 29958000 2643100 43615000 71907000 63458000 36434000 35401000 39292000 26154000 35032000 5 5 3 5 5 5 5 5 5 5 5 20527000 32397000 70264 41262000 14755000 14102000 13858000 31708000 34152000 23810000 33717000 19112000 30263000 1539600 41062000 14120000 16437000 14732000 31113000 33841000 23579000 32539000 6 6 2 6 6 6 6 6 6 6 6 6501400000 4482200000 2019100000 245 788 231 1204;1205;1206;1207;1208;1209;1210 1478;1479;1480;1481;1482;1483;1484;1485;1486;1487;1488;1489 1479 12 AASITSEVFNK Unmodified 1165.5979 0.59790293 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 0 0 By MS/MS 6 0 1 1 55.939 56.012 2 2.9562E-08 16303 20211116_3445_TMUAki_TMT10x_S_F6 152.54 120.22 3195900 4872900 34200 5860300 2730800 2237900 2440800 4250500 4211500 3420100 4743900 2976000 4550700 290320 5854600 2613200 2548500 2545800 4195200 4225900 3374500 4559800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3195900 4872900 34200 5860300 2730800 2237900 2440800 4250500 4211500 3420100 4743900 2976000 4550700 290320 5854600 2613200 2548500 2545800 4195200 4225900 3374500 4559800 1 1 1 1 1 1 1 1 1 1 1 353810000 0 353810000 246 3317 232 1211 1490 1490 1 AASLTEDRDR Unmodified 1132.5473 0.54726434 1511 Q04637;Q04637-3;Q04637-8;Q04637-5;Q04637-4;Q04637-9;Q04637-6;Q04637-7 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 1 By MS/MS 2 0 1 1 26.61 26.373 3 0.0044617 6117 20211116_3429_TMUAki_TMT10x_P_F2 70.389 41.877 199910 315550 0 252320 193000 288640 199380 111100 133940 137760 202940 186130 294210 15989 262420 185190 287820 199880 122720 141580 133450 193640 1 1 0 1 1 1 1 1 1 1 1 199910 315550 0 252320 193000 288640 199380 111100 133940 137760 202940 186130 294210 15989 262420 185190 287820 199880 122720 141580 133450 193640 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2171100 2171100 0 247 1511 233 1212 1491 1491 1 AASQAVEEMR Acetyl (Protein N-term);Oxidation (M) 1148.5132 0.51318702 170 O15160;O15160-2 POLR1C DNA-directed RNA polymerases I and III subunit RPAC1 yes no 1 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 30.107 30.107 2 3.4653E-05 6049 20211116_3428_TMUAki_TMT10x_P_F1 66.568 60.066 60791 90920 3999.2 98429 135620 134770 82432 73210 72124 77827 98214 56632 84866 9815.2 100430 128950 133670 86077 77680 74751 75819 93936 1 1 1 1 1 1 1 1 1 1 1 60791 90920 3999.2 98429 135620 134770 82432 73210 72124 77827 98214 56632 84866 9815.2 100430 128950 133670 86077 77680 74751 75819 93936 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9513700 9513700 0 248 170 234 1213;1214 1492;1493 1492 131 2 AASQSTQVPTITEGVAAALLLLK Unmodified 2281.2893 0.28931231 2350 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.4 0.49 3 2 2 3 82.618 82.598 3 4.0425E-11 29315 20211116_3430_TMUAki_TMT10x_P_F3 107.21 84.31 1112000 1675500 1066.9 1596200 1099400 1924000 1245100 1084400 1140500 1230700 1430800 1035400 1563100 87943 1638800 1057600 1920900 1252100 1149300 1175100 1196000 1371200 2 2 1 2 2 2 2 2 2 2 2 860980 1282100 1066.9 1201400 838580 1633000 882240 838120 830150 952720 1116800 801660 1196100 72062 1237800 805230 1619100 891000 895690 856990 925750 1068500 1 1 1 1 1 1 1 1 1 1 1 251060 393340 0 394710 260870 291010 362810 246280 310360 278020 313980 233720 367030 15881 401020 252370 301850 361060 253610 318160 270220 302770 1 1 0 1 1 1 1 1 1 1 1 541670000 340760000 200910000 249 2350 235 1215;1216;1217;1218;1219 1494;1495;1496 1494 3 AASTASHRPIK Acetyl (Protein N-term) 1179.636 0.63601977 999 P41236;Q6NXS1 PPP1R2;PPP1R2P3 Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3 yes no 1 0 0 1 By MS/MS 5 0 1 1 24.2 24.123 3 0.0033966 4518 20211116_3433_TMUAki_TMT10x_P_F5 67.153 51.272 76871 106170 3689.8 102890 91895 129460 89325 91718 67866 57612 91627 71602 99052 10022 105590 88272 129400 90076 94136 70825 57672 87654 1 1 1 1 1 1 1 1 1 1 1 76871 106170 3689.8 102890 91895 129460 89325 91718 67866 57612 91627 71602 99052 10022 105590 88272 129400 90076 94136 70825 57672 87654 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3043200 3043200 0 250 999 236 1220 1497 1497 1 AATAAADFTAK Unmodified 1036.5189 0.51892433 3284 Q9Y3F4;Q9Y3F4-2 STRAP Serine-threonine kinase receptor-associated protein yes no 0 0 0 0 By MS/MS By MS/MS 5 0.577 1 4 1 2 4 42.735 42.865 2;3 4.1072E-16 10631 20211116_3444_TMUAki_TMT10x_S_F5 213.03 171.58 6840200 10981000 160310 11587000 9678600 8544700 7881800 6038200 6578600 5808800 8529600 6370100 10248000 756260 11732000 9244900 8836100 8048500 6258900 6818800 5682600 8167800 4 4 4 4 4 4 4 4 4 4 4 2864400 4338000 61096 4531200 5445000 4865900 3481800 2673200 2868300 2400500 3364900 2667500 4048600 330560 4613900 5175300 4887200 3615400 2820400 2962500 2355700 3230600 1 1 1 1 1 1 1 1 1 1 1 3975900 6642700 99215 7055900 4233600 3678800 4400000 3365000 3710200 3408200 5164700 3702700 6199900 425700 7118500 4069600 3949000 4433000 3438500 3856300 3326900 4937200 3 3 3 3 3 3 3 3 3 3 3 473950000 162670000 311280000 251 3284 237 1221;1222;1223;1224;1225;1226 1498;1499;1500;1501;1502;1503 1501 6 AATAPLLEAVDNLSAFASNPEFSSIPAQISPEGR Unmodified 3469.7365 0.73652826 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.4 1.36 1 1 2 1 4 1 82.644 82.653 4 1.5269E-73 28909 20211116_3435_TMUAki_TMT10x_P_F7 219.65 217.9 1992400 3377400 5851.6 3095700 2176900 3658200 2392100 2246200 2267400 2488200 2634300 1854900 3150400 86533 3186400 2091300 3660300 2411300 2362300 2325200 2420100 2529800 8 8 2 8 8 8 8 8 8 8 8 1567900 2511400 5851.6 2264100 1623900 3120900 1837200 1595500 1679500 1814300 1962600 1459700 2342500 86533 2340100 1561100 3092300 1847500 1705700 1725600 1762900 1884500 6 6 2 6 6 6 6 6 6 6 6 424420 865960 0 831530 552930 537280 554900 650740 587850 673870 671700 395180 807900 0 846330 530220 568050 563780 656590 599570 657180 645370 2 2 0 2 2 2 2 2 2 2 2 860970000 496090000 364880000 252 3293 238 1227;1228;1229;1230;1231 1504;1505;1506;1507;1508;1509;1510;1511 1507 8 AATFFGEVVK Acetyl (Protein N-term) 1109.5757 0.57571092 432 O95456;O95456-2 PSMG1 Proteasome assembly chaperone 1 yes no 1 0 0 0 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 79.419 79.4 2 1.525E-06 26861 20211116_3442_TMUAki_TMT10x_S_F4 69.825 26.824 19119000 32062000 45676 29234000 20341000 27870000 22475000 15655000 15325000 17971000 22288000 17801000 29907000 1514300 30003000 19551000 28202000 22464000 16603000 16151000 17456000 21285000 5 5 2 5 5 5 5 5 5 5 5 11169000 18570000 45676 17230000 10871000 19590000 13117000 8981400 8820600 10451000 13444000 10399000 17323000 938980 17707000 10481000 19573000 13054000 9711100 9325500 10147000 12826000 3 3 2 3 3 3 3 3 3 3 3 7950200 13492000 0 12005000 9469500 8280500 9358000 6673800 6504600 7519200 8844300 7401600 12584000 575320 12296000 9070200 8629200 9409700 6891900 6825200 7308800 8459400 2 2 0 2 2 2 2 2 2 2 2 3056100000 1682400000 1373800000 253 432 239 1232;1233;1234;1235 1512;1513;1514;1515;1516 1515 5 AATIIEER Unmodified 901.4869 0.48689592 1501 Q02952;Q02952-3;Q02952-2 AKAP12 A-kinase anchor protein 12 yes no 0 0 0 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 35.393 35.31 2 0.0030971 9763 20211116_3429_TMUAki_TMT10x_P_F2 102 66.752 4413200 7170100 77918 7002200 7790000 7588800 5635700 5419200 5792000 4786100 6342100 4109700 6689800 476200 7164000 7419400 7646000 5834000 5600400 5905100 4700500 6101000 5 5 3 5 5 5 5 5 5 5 5 2752500 4379600 66431 4221100 5828000 5905500 3645700 3393500 3674400 2992200 3988100 2563300 4086100 333180 4342600 5537300 5855700 3813000 3565000 3748000 2938900 3837500 2 2 2 2 2 2 2 2 2 2 2 1660800 2790500 11487 2781100 1962000 1683300 1989900 2025700 2117600 1793900 2354000 1546400 2603800 143010 2821400 1882000 1790200 2021000 2035400 2157100 1761600 2263500 3 3 1 3 3 3 3 3 3 3 3 139460000 67990000 71471000 254 1501 240 1236;1237;1238;1239;1240 1517;1518;1519;1520;1521 1518 5 AATITATSPGALWGLDR Unmodified 1699.8893 0.88933392 886 P31323 PRKAR2B cAMP-dependent protein kinase type II-beta regulatory subunit yes yes 0 0 0 0 By MS/MS 1 0 1 1 69.18 68.992 3 3.2701E-07 23788 20211116_3439_TMUAki_TMT10x_S_F1 103.04 84.446 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 255 886 241 1241 1522 1522 1 AATMTAAGHHAEVVVDPEDER Oxidation (M) 2221.007 0.0069592315 1669 Q13895 BYSL Bystin yes yes 0 0 1 0 By MS/MS By MS/MS 2 0.816 1 1 1 1 2 30.924 30.781 4 2.1422E-19 9381 20211116_3441_TMUAki_TMT10x_S_F3 149.94 130.73 775630 1116300 0 1658000 1462300 1040800 718940 1042400 1349600 703010 1106400 721980 1043700 48951 1643900 1381800 1098400 787640 1049600 1336700 700570 1074800 3 3 0 3 3 3 3 3 3 3 3 297810 419160 0 610940 1118100 775530 349560 348260 531830 287680 414520 277230 391830 29341 612170 1052300 770300 400400 373840 528910 283460 403500 1 1 0 1 1 1 1 1 1 1 1 477820 697160 0 1047000 344150 265240 369380 694100 817730 415320 691880 444750 651830 19610 1031800 329450 328070 387240 675730 807820 417110 671330 2 2 0 2 2 2 2 2 2 2 2 163860000 100780000 63075000 256 1669 242 1242;1243;1244 1523;1524;1525 1525 2241 3 AATSPALFNR Unmodified 1046.5509 0.55089316 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS 7 0 1 1 37.309 37.99 2 0.0097295 11057 20211116_3446_TMUAki_TMT10x_S_F7 67.897 43.925 308620 481490 0 656060 251240 216660 258640 407510 518010 338690 440800 287330 449930 21167 650390 240850 252110 269990 402640 512900 333620 427610 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 308620 481490 0 656060 251240 216660 258640 407510 518010 338690 440800 287330 449930 21167 650390 240850 252110 269990 402640 512900 333620 427610 2 2 0 2 2 2 2 2 2 2 2 4880200 0 4880200 257 1695 243 1245 1526;1527 1527 2 AATVENAVLLETNTVEEK Unmodified 1929.9895 0.98950148 1945 Q5UIP0;Q5UIP0-2 RIF1 Telomere-associated protein RIF1 yes no 0 0 0 0 By MS/MS 3 0 1 1 69.927 69.485 3 2.0104E-05 25094 20211116_3441_TMUAki_TMT10x_S_F3 84.375 65.052 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 258 1945 244 1246 1528 1528 1 AAVAASVGLSEGPAGSR Unmodified 1498.774 0.77396981 2104 Q86U90 YRDC YrdC domain-containing protein, mitochondrial yes yes 0 0 0 0 By MS/MS 6 0 1 1 43.199 43.252 3 0.001637 10731 20211116_3434_TMUAki_TMT10x_P_F6 65.231 49.094 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 259 2104 245 1247 1529 1529 1 AAVAGEDGR Unmodified 844.40389 0.40389457 545 P07910-2;P07910-4;P07910;O60812;B7ZW38;B2RXH8;P0DMR1 HNRNPC;HNRNPCL1;HNRNPCL3;HNRNPCL2;HNRNPCL4 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2;Heterogeneous nuclear ribonucleoprotein C-like 4 yes no 0 0 0 0 By MS/MS 2 0 1 1 24.272 24.045 2 0.012778 5275 20211116_3429_TMUAki_TMT10x_P_F2 65.156 36.733 50750 83951 0 68261 62888 76888 58794 44730 46782 49879 53934 47247 78276 3545.3 70875 60143 77074 59480 47255 48372 48502 51807 1 1 0 1 1 1 1 1 1 1 1 50750 83951 0 68261 62888 76888 58794 44730 46782 49879 53934 47247 78276 3545.3 70875 60143 77074 59480 47255 48372 48502 51807 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 960390 960390 0 260 545 246 1248 1530 1530 1 AAVATFLQSVQVPEFTPK Unmodified 1932.0357 0.03566381 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.14 0.639 1 4 2 3 4 79.499 79.455 3;4 0.01079 26835 20211116_3442_TMUAki_TMT10x_S_F4 46.133 32.301 455530000 685030000 11302000 671730000 478690000 736880000 607980000 481210000 464820000 503500000 560310000 424200000 639160000 45752000 687190000 462740000 740920000 605500000 502830000 482520000 490830000 537560000 8 8 6 8 8 8 8 8 8 8 8 252170000 364320000 6817600 379230000 220930000 486390000 316450000 269330000 262180000 272400000 312900000 234850000 340000000 26823000 387430000 214650000 484020000 314320000 284880000 270900000 265910000 300280000 3 3 3 3 3 3 3 3 3 3 3 203360000 320710000 4484200 292500000 257760000 250490000 291520000 211890000 202630000 231100000 247410000 189360000 299150000 18929000 299760000 248080000 256900000 291190000 217950000 211620000 224920000 237280000 5 5 3 5 5 5 5 5 5 5 5 18129000000 7168700000 10960000000 261 769 247 1249;1250;1251;1252;1253;1254;1255 1531;1532;1533 1532 3 AAVAWEAGKPLSIEEIEVAPPK Unmodified 2304.2365 0.23654846 631 P11766 ADH5 Alcohol dehydrogenase class-3 yes yes 0 0 0 1 By MS/MS By MS/MS 6.4 0.49 3 2 2 3 72.954 72.988 3;4 2.0827E-19 22935 20211116_3434_TMUAki_TMT10x_P_F6 144.88 125.99 26159000 41343000 450710 40452000 27501000 26536000 31175000 16880000 14998000 19546000 29359000 24359000 38574000 2547100 41123000 26485000 27674000 30929000 17729000 16475000 18979000 27877000 6 6 4 6 6 6 6 6 6 6 6 6391300 10033000 55837 9589800 6660800 9551300 8629500 3844500 3364300 4505800 6934300 5951200 9360200 574410 9813900 6438800 9604400 8487400 4216700 3779700 4373400 6578800 2 2 1 2 2 2 2 2 2 2 2 19768000 31310000 394880 30862000 20840000 16984000 22545000 13035000 11634000 15040000 22425000 18408000 29214000 1972700 31309000 20046000 18070000 22442000 13512000 12696000 14606000 21298000 4 4 3 4 4 4 4 4 4 4 4 4887000000 1902900000 2984200000 262 631 248 1256;1257;1258;1259;1260 1534;1535;1536;1537;1538;1539 1534 6 AAVEEGIVLGGGCALLR Unmodified 1683.8978 0.89779012 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4.37 1.7 3 4 7 5 12 8 4 18 25 63.124 63.068 2;3 1.7583E-70 21960 20211116_3445_TMUAki_TMT10x_S_F6 314.78 253.81 146220000 239430000 833240 223970000 165580000 198330000 167180000 145430000 126840000 149780000 175800000 136140000 223350000 11065000 229190000 158760000 202440000 168250000 150660000 132540000 146100000 168080000 44 44 15 44 44 44 44 44 44 44 44 65795000 104650000 220110 99908000 62351000 113830000 71858000 64336000 57909000 65640000 75477000 61256000 97628000 4772900 102470000 59983000 113990000 71959000 67949000 60146000 64054000 72266000 19 19 5 19 19 19 19 19 19 19 19 80424000 134780000 613120 124060000 103230000 84500000 95327000 81089000 68928000 84138000 100330000 74882000 125730000 6291800 126730000 98777000 88446000 96290000 82709000 72392000 82048000 95810000 25 25 10 25 25 25 25 25 25 25 25 102630000000 52418000000 50215000000 263 613 249 1261;1262;1263;1264;1265;1266;1267;1268;1269;1270;1271;1272;1273;1274;1275;1276;1277;1278;1279;1280;1281;1282;1283;1284;1285;1286;1287;1288;1289;1290;1291;1292;1293;1294;1295;1296;1297;1298;1299;1300;1301;1302;1303 1540;1541;1542;1543;1544;1545;1546;1547;1548;1549;1550;1551;1552;1553;1554;1555;1556;1557;1558;1559;1560;1561;1562;1563;1564;1565;1566;1567;1568;1569;1570;1571;1572;1573;1574;1575;1576;1577;1578;1579;1580;1581;1582;1583;1584;1585;1586;1587;1588;1589;1590;1591;1592;1593;1594;1595;1596;1597;1598;1599 1591 60 AAVEGTVEAGATVESTAC Unmodified 1721.7778 0.77779414 1091 P49321;P49321-3;P49321-4;P49321-2 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 0 By MS/MS By MS/MS 1.86 0.639 2 4 1 4 3 92.989 92.989 3 9.9057E-05 29839 20211116_3429_TMUAki_TMT10x_P_F2 72.898 58.992 196990 297690 57.077 286450 205820 354760 243170 198930 221230 251110 240900 183410 277740 10408 294050 198270 353690 244020 211680 226720 243090 231780 6 6 1 6 6 6 6 6 6 6 6 173030 264440 57.077 249820 176630 332370 211420 175800 192890 218700 208490 161110 246700 10408 257130 170210 329980 212060 187930 197600 211830 200640 4 4 1 4 4 4 4 4 4 4 4 23955 33252 0 36632 29191 22396 31744 23127 28334 32402 32411 22304 31040 0 36919 28054 23710 31960 23755 29119 31264 31140 2 2 0 2 2 2 2 2 2 2 2 20228000 8473500 11754000 264 1091 250 1304;1305;1306;1307;1308;1309;1310 1600;1601;1602;1603;1604;1605;1606;1607 1604 8 AAVELEEPEDAR Unmodified 1327.6256 0.62557424 395 O94906;O94906-2 PRPF6 Pre-mRNA-processing factor 6 yes no 0 0 0 0 By matching By MS/MS 1 0 2 1 1 40.047 39.977 2 0.00050997 11948 20211116_3439_TMUAki_TMT10x_S_F1 84.896 57.798 371940 592380 0 752460 305120 278200 335660 497770 695620 418780 576680 346210 553350 18102 749230 292560 317600 350020 492650 687700 412250 559990 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 371940 592380 0 752460 305120 278200 335660 497770 695620 418780 576680 346210 553350 18102 749230 292560 317600 350020 492650 687700 412250 559990 1 1 0 1 1 1 1 1 1 1 1 63803000 42583000 21220000 265 395 251 1311;1312 1608 1608 1 AAVENLPTFLVELSR Unmodified 1657.9039 0.90392136 1739 Q14974 KPNB1 Importin subunit beta-1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.91 1.21 1 5 4 8 14 20 12 74.144 74.151 2;3 4.5065E-72 28177 20211116_3446_TMUAki_TMT10x_S_F7 323.68 277.69 172880000 280340000 432850 263790000 195860000 259520000 206470000 162470000 167640000 181600000 211530000 160950000 261520000 10560000 270210000 187920000 262460000 207680000 170660000 173800000 176570000 202700000 37 37 19 37 37 37 37 37 37 37 37 99397000 157960000 180430 151640000 93278000 173710000 109000000 95304000 96107000 105220000 121420000 92537000 147370000 6157400 155470000 89745000 173840000 109340000 101150000 99234000 102350000 116350000 25 25 15 25 25 25 25 25 25 25 25 73482000 122380000 252420 112150000 102590000 85803000 97475000 67169000 71531000 76377000 90105000 68411000 114150000 4402200 114740000 98173000 88617000 98337000 69509000 74565000 74214000 86346000 12 12 4 12 12 12 12 12 12 12 12 63889000000 28100000000 35789000000 266 1739 252 1313;1314;1315;1316;1317;1318;1319;1320;1321;1322;1323;1324;1325;1326;1327;1328;1329;1330;1331;1332;1333;1334;1335;1336;1337;1338;1339;1340;1341;1342;1343;1344 1609;1610;1611;1612;1613;1614;1615;1616;1617;1618;1619;1620;1621;1622;1623;1624;1625;1626;1627;1628;1629;1630;1631;1632;1633;1634;1635;1636;1637;1638;1639;1640;1641;1642;1643;1644;1645;1646;1647;1648;1649;1650;1651;1652;1653;1654 1647 46 AAVESLGFILFR Unmodified 1321.7394 0.73942221 2575 Q99460;Q99460-2 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 79.959 79.912 2 1.4145E-20 29185 20211116_3441_TMUAki_TMT10x_S_F3 237.44 177 20522000 31114000 200490 27375000 21137000 37192000 23710000 23332000 22587000 24746000 24430000 19108000 29018000 1733400 28337000 20334000 36971000 23881000 24464000 23093000 24110000 23510000 3 3 2 3 3 3 3 3 3 3 3 14499000 19935000 90461 19006000 13730000 29492000 14966000 14553000 14671000 15495000 15297000 13499000 18598000 1112200 19611000 13191000 29062000 15107000 15579000 14960000 15095000 14737000 2 2 1 2 2 2 2 2 2 2 2 6022600 11179000 110030 8368900 7407500 7699400 8744000 8778800 7916500 9250300 9133000 5608500 10421000 621250 8726200 7142900 7909200 8773900 8885300 8133000 9014900 8772600 1 1 1 1 1 1 1 1 1 1 1 2355700000 1670500000 685210000 267 2575 253 1345;1346;1347 1655;1656;1657 1657 3 AAVEWFDGK Unmodified 1021.4869 0.48689592 1489 Q01844;Q01844-6;Q01844-3;Q01844-5;Q01844-2 EWSR1 RNA-binding protein EWS yes no 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 61.397 61.476 2 1.5991E-05 19292 20211116_3433_TMUAki_TMT10x_P_F5 157.91 35.394 55012000 82309000 368700 102850000 91223000 73803000 68631000 35591000 33002000 38750000 65184000 51223000 76880000 5273200 103040000 86914000 76118000 69694000 38209000 36275000 37715000 61884000 8 8 4 8 8 8 8 8 8 8 8 34304000 50311000 191560 61731000 72133000 60152000 51110000 21274000 21260000 24010000 39217000 31940000 46988000 3424200 62146000 68640000 60503000 52019000 23674000 23572000 23337000 37275000 5 5 2 5 5 5 5 5 5 5 5 20708000 31998000 177140 41117000 19090000 13650000 17521000 14317000 11742000 14740000 25966000 19283000 29891000 1849000 40891000 18275000 15615000 17676000 14535000 12703000 14378000 24609000 3 3 2 3 3 3 3 3 3 3 3 1723900000 1208400000 515510000 268 1489 254 1348;1349;1350;1351;1352 1658;1659;1660;1661;1662;1663;1664;1665 1660 8 AAVFEEIDTYERR Unmodified 1597.7736 0.77363546 2457 Q96F86 EDC3 Enhancer of mRNA-decapping protein 3 yes yes 0 0 0 1 By MS/MS 3 0 1 1 54.9 54.513 3 4.3026E-06 18984 20211116_3441_TMUAki_TMT10x_S_F3 99.941 84.051 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 269 2457 255 1353 1666 1666 1 AAVGRPLDKHEGALETLLR Unmodified 2045.1382 0.13817182 2301 Q8WUM4;Q8WUM4-2;Q8WUM4-3 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 2 By MS/MS By MS/MS 7.4 0.49 3 2 3 2 46.817 47.148 4;5 1.005E-40 14687 20211116_3446_TMUAki_TMT10x_S_F7 204.78 179.22 19060000 29102000 58055 30627000 23203000 26802000 19512000 19613000 19027000 19815000 23102000 17747000 27161000 1648800 31080000 22156000 27379000 19969000 20310000 19522000 19344000 22159000 5 5 3 5 5 5 5 5 5 5 5 9701900 14677000 37798 15581000 14931000 19393000 11369000 10605000 10480000 10545000 12004000 9033400 13698000 874370 15888000 14227000 19324000 11691000 11224000 10755000 10302000 11532000 3 3 2 3 3 3 3 3 3 3 3 9358300 14425000 20257 15046000 8271600 7408500 8142700 9007500 8546800 9269400 11098000 8713700 13462000 774460 15192000 7928900 8054400 8278700 9085300 8767800 9042200 10627000 2 2 1 2 2 2 2 2 2 2 2 3285000000 1903300000 1381700000 270 2301 256 1354;1355;1356;1357;1358 1667;1668;1669;1670;1671 1670 5 AAVHTYGIASVPNQPLKK Unmodified 1893.0472 0.047231549 3120 Q9UHI6 DDX20 Probable ATP-dependent RNA helicase DDX20 yes yes 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 43.818 43.659 4 3.4022E-12 14518 20211116_3441_TMUAki_TMT10x_S_F3 131.4 121.3 513520 859390 212.05 1186100 401990 396870 325670 804980 910280 639510 845270 478140 803120 41210 1175100 383540 462160 352430 792900 898170 631400 817410 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 513520 859390 212.05 1186100 401990 396870 325670 804980 910280 639510 845270 478140 803120 41210 1175100 383540 462160 352430 792900 898170 631400 817410 1 1 1 1 1 1 1 1 1 1 1 80643000 0 80643000 271 3120 257 1359;1360 1672 1672 1 AAVHYDR Unmodified 830.4035 0.40350064 2113 Q86V81 ALYREF THO complex subunit 4 yes yes 0 0 0 0 By MS/MS 3 0 1 1 25.651 25.351 3 0.013995 7250 20211116_3441_TMUAki_TMT10x_S_F3 75.854 36.312 57889 84566 4252.7 80979 72656 55713 77149 54394 54395 65859 71285 53932 78895 8969.5 82487 70036 58286 77317 55714 56933 63849 68243 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57889 84566 4252.7 80979 72656 55713 77149 54394 54395 65859 71285 53932 78895 8969.5 82487 70036 58286 77317 55714 56933 63849 68243 1 1 1 1 1 1 1 1 1 1 1 3556200 0 3556200 272 2113 258 1361 1673 1673 1 AAVIGDVIR Unmodified 912.53927 0.53926584 2918 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 48.472 48.624 2 0.00014212 12955 20211116_3444_TMUAki_TMT10x_S_F5 137.9 94.658 23751000 34898000 835820 40816000 36428000 32972000 24957000 25020000 23392000 20768000 30836000 22120000 32586000 2925600 41104000 34692000 33895000 25867000 25713000 24130000 20458000 29516000 5 5 5 5 5 5 5 5 5 5 5 14164000 19017000 482190 21749000 26557000 25256000 16138000 13959000 12860000 11448000 17616000 13192000 17755000 1797200 22047000 25231000 25259000 16812000 14688000 13395000 11284000 16846000 3 3 3 3 3 3 3 3 3 3 3 9586700 15881000 353630 19067000 9871400 7716400 8819800 11061000 10532000 9320000 13220000 8928800 14831000 1128400 19057000 9460100 8636300 9054300 11025000 10735000 9174100 12670000 2 2 2 2 2 2 2 2 2 2 2 1352100000 1006600000 345540000 273 2918 259 1362;1363;1364;1365;1366 1674;1675;1676;1677;1678 1677 5 AAVKDVEEEKFPTQLSR Unmodified 1946.0109 0.010905622 1881 Q2TAY7;Q2TAY7-2 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes no 0 0 0 2 By MS/MS By matching 6.67 0.471 1 2 2 1 47.636 48.026 4 1.4113E-10 12601 20211116_3434_TMUAki_TMT10x_P_F6 125.03 109.88 9171900 15147000 112180 15517000 29074000 33071000 16852000 20473000 18149000 16157000 16938000 8540500 14135000 1112400 16067000 27575000 32325000 17773000 21322000 18364000 15958000 16377000 3 3 2 3 3 3 3 3 3 3 3 9171900 15147000 112180 15517000 29074000 33071000 16852000 20473000 18149000 16157000 16938000 8540500 14135000 1112400 16067000 27575000 32325000 17773000 21322000 18364000 15958000 16377000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1337300000 1077900000 259420000 274 1881 260 1367;1368;1369 1679;1680;1681 1679 3 AAVLGENGR Unmodified 885.46683 0.46682918 3158 Q9UKM9;Q9UKM9-2 RALY RNA-binding protein Raly yes no 0 0 0 0 By MS/MS 3 0 1 1 31.626 31.373 2 0.0039741 9595 20211116_3441_TMUAki_TMT10x_S_F3 77.318 50.064 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 275 3158 261 1370 1682 1682 1 AAVLLEQER Unmodified 1027.5662 0.56620887 1633 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 0 0 By MS/MS 3 0 1 1 42.258 42.313 2 0.053128 12912 20211116_3430_TMUAki_TMT10x_P_F3 55.112 26.166 386730 634880 6698.4 760940 992780 1001600 584830 690500 594450 497490 666930 360130 592880 46793 770980 942070 998510 614850 711970 606900 493820 641120 1 1 1 1 1 1 1 1 1 1 1 386730 634880 6698.4 760940 992780 1001600 584830 690500 594450 497490 666930 360130 592880 46793 770980 942070 998510 614850 711970 606900 493820 641120 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25179000 25179000 0 276 1633 262 1371 1683 1683 1 AAVLQQVLER Acetyl (Protein N-term) 1167.6612 0.66117189 641 P12270;P12270-2 TPR Nucleoprotein TPR yes no 1 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 79.993 79.944 2 9.0299E-09 29225 20211116_3441_TMUAki_TMT10x_S_F3 144.09 125.31 2522000 4127500 177980 3827200 2811900 3212600 3177500 2238700 2646200 2429400 2875600 2349600 3850300 379030 3916400 2716200 3288800 3187500 2331000 2723400 2364800 2766800 3 3 3 3 3 3 3 3 3 3 3 911550 1423700 47353 1421100 934440 1600200 1023500 869270 1007200 824520 997420 849100 1328500 120030 1452600 901090 1602700 1033000 919360 1025000 807110 962480 1 1 1 1 1 1 1 1 1 1 1 1610500 2703800 130630 2406100 1877500 1612400 2154000 1369400 1638900 1604900 1878100 1500500 2521800 259000 2463800 1815100 1686100 2154500 1411600 1698400 1557700 1804400 2 2 2 2 2 2 2 2 2 2 2 1235200000 244490000 990680000 277 641 263 1372;1373;1374 1684;1685;1686 1685 3 AAVPLGGFLCNVADK Unmodified 1530.7864 0.78644876 2064 Q7L8L6 FASTKD5 FAST kinase domain-containing protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 75.331 75.285 3 2.3023E-06 24455 20211116_3436_TMUAki_TMT10x_P_F8 87.498 58.858 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 278 2064 264 1375;1376 1687;1688 1687 2 AAVPSGASTGIYEALELR Unmodified 1803.9367 0.93667805 520;568;661 P06733;P09104;P09104-2;P13929;P13929-3;P13929-2 ENO1;ENO2;ENO3 Alpha-enolase;Gamma-enolase;Beta-enolase no no 0 0 0 0 By MS/MS By MS/MS 5.81 1.44 3 7 8 25 16 45 4 52 56 45.242 45.28 2;3 2.6868E-90 21511 20211116_3434_TMUAki_TMT10x_P_F6 328.29 278.79 157080000 269590000 730200 246230000 187020000 272890000 207670000 171630000 163440000 184500000 197260000 146260000 251470000 10098000 253240000 179820000 274080000 208200000 180000000 169410000 179660000 189240000 105 106 43 106 106 106 106 106 106 106 106 90440000 154080000 343980 140720000 108520000 197280000 126070000 99773000 95056000 105140000 109710000 84205000 143720000 5740400 145350000 104470000 195300000 126000000 106520000 98581000 102470000 105380000 57 58 27 58 58 58 58 58 58 58 58 66644000 115510000 386220 105510000 78493000 75609000 81602000 71861000 68384000 79358000 87546000 62052000 107740000 4357700 107890000 75344000 78785000 82201000 73476000 70828000 77196000 83860000 48 48 16 48 48 48 48 48 48 48 48 210100000000 109130000000 100970000000 279 520;568;661 265 1377;1378;1379;1380;1381;1382;1383;1384;1385;1386;1387;1388;1389;1390;1391;1392;1393;1394;1395;1396;1397;1398;1399;1400;1401;1402;1403;1404;1405;1406;1407;1408;1409;1410;1411;1412;1413;1414;1415;1416;1417;1418;1419;1420;1421;1422;1423;1424;1425;1426;1427;1428;1429;1430;1431;1432;1433;1434;1435;1436;1437;1438;1439;1440;1441;1442;1443;1444;1445;1446;1447;1448;1449;1450;1451;1452;1453;1454;1455;1456;1457;1458;1459;1460;1461;1462;1463;1464;1465;1466;1467;1468;1469;1470;1471;1472;1473;1474;1475;1476;1477;1478;1479;1480;1481;1482;1483;1484 1689;1690;1691;1692;1693;1694;1695;1696;1697;1698;1699;1700;1701;1702;1703;1704;1705;1706;1707;1708;1709;1710;1711;1712;1713;1714;1715;1716;1717;1718;1719;1720;1721;1722;1723;1724;1725;1726;1727;1728;1729;1730;1731;1732;1733;1734;1735;1736;1737;1738;1739;1740;1741;1742;1743;1744;1745;1746;1747;1748;1749;1750;1751;1752;1753;1754;1755;1756;1757;1758;1759;1760;1761;1762;1763;1764;1765;1766;1767;1768;1769;1770;1771;1772;1773;1774;1775;1776;1777;1778;1779;1780;1781;1782;1783;1784;1785;1786;1787;1788;1789;1790;1791;1792;1793;1794;1795;1796;1797;1798;1799;1800;1801;1802;1803;1804;1805;1806;1807;1808;1809;1810;1811;1812;1813;1814 1720 126 AAVPSGASTGIYEALELRDGDK Unmodified 2219.107 0.10699085 568;661 P09104;P09104-2;P13929;P13929-3;P13929-2 ENO2;ENO3 Gamma-enolase;Beta-enolase no no 0 0 0 1 By MS/MS By MS/MS 5 0.775 3 4 3 5 5 63.194 63.241 3;4 6.9878E-46 19796 20211116_3431_TMUAki_TMT10x_P_F4 218.07 196.84 63677000 93316000 205650 120550000 64494000 69551000 55416000 45630000 44327000 45739000 66121000 59288000 87176000 5171300 120290000 61604000 73462000 56343000 47604000 46354000 44667000 63110000 11 11 5 11 11 11 11 11 11 11 11 37755000 54469000 84300 71686000 35149000 52372000 33280000 26941000 26134000 27431000 38773000 35152000 50890000 2915700 71626000 33644000 53973000 33633000 28690000 27348000 26770000 37012000 6 6 2 6 6 6 6 6 6 6 6 25922000 38847000 121350 48863000 29345000 17179000 22137000 18689000 18193000 18309000 27348000 24136000 36286000 2255600 48667000 27960000 19489000 22709000 18914000 19006000 17897000 26098000 5 5 3 5 5 5 5 5 5 5 5 7514500000 4017000000 3497500000 280 568;661 266 1485;1486;1487;1488;1489;1490;1491;1492;1493;1494 1815;1816;1817;1818;1819;1820;1821;1822;1823;1824;1825 1815 11 AAVPSGASTGIYEALELRDGDKQR Unmodified 2503.2667 0.26667939 568 P09104;P09104-2 ENO2 Gamma-enolase yes no 0 0 0 2 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 55.858 56.005 4 6.002E-105 15974 20211116_3444_TMUAki_TMT10x_S_F5 301.34 278.35 11105000 18773000 89892 16419000 16188000 21352000 14364000 19365000 17420000 16461000 18285000 10340000 17509000 936590 16990000 15473000 21403000 14760000 19702000 17619000 16196000 17612000 5 5 2 5 5 5 5 5 5 5 5 7187300 11950000 0 10414000 10319000 16925000 10163000 12164000 11203000 10187000 12139000 6691000 11145000 500650 10830000 9881300 16734000 10349000 12549000 11385000 10031000 11681000 3 3 0 3 3 3 3 3 3 3 3 3918100 6822700 89892 6005000 5869400 4426300 4201300 7201100 6217200 6273700 6146000 3648800 6363300 435940 6160200 5591400 4668900 4411200 7153700 6234200 6165400 5931100 2 2 2 2 2 2 2 2 2 2 2 3088500000 2396100000 692340000 281 568 267 1495;1496;1497 1826;1827;1828;1829;1830 1829 5 AAVPSGASTGIYEALELRDNDK Unmodified 2276.1285 0.12845458 520 P06733 ENO1 Alpha-enolase yes yes 0 0 0 1 By MS/MS By MS/MS 4.21 1.78 2 4 4 5 5 5 3 14 14 63.355 63.349 2;3;4 2.6965E-102 19919 20211116_3442_TMUAki_TMT10x_S_F4 321.13 296.53 503670000 762590000 5236100 894530000 500770000 533290000 453660000 379970000 382370000 380370000 520940000 468990000 712070000 44947000 897840000 479190000 562120000 460420000 394070000 397030000 371470000 498240000 50 50 35 50 50 50 50 50 50 50 50 245600000 347900000 2029600 410620000 224030000 350890000 222620000 182890000 188650000 182080000 237790000 228680000 324870000 20916000 413580000 214830000 357370000 224840000 194400000 195150000 177870000 227870000 23 23 18 23 23 23 23 23 23 23 23 258070000 414680000 3206500 483900000 276740000 182400000 231040000 197080000 193720000 198290000 283150000 240310000 387200000 24031000 484260000 264360000 204740000 235590000 199670000 201890000 193610000 270370000 27 27 17 27 27 27 27 27 27 27 27 172910000000 89840000000 83066000000 282 520 268 1498;1499;1500;1501;1502;1503;1504;1505;1506;1507;1508;1509;1510;1511;1512;1513;1514;1515;1516;1517;1518;1519;1520;1521;1522;1523;1524;1525 1831;1832;1833;1834;1835;1836;1837;1838;1839;1840;1841;1842;1843;1844;1845;1846;1847;1848;1849;1850;1851;1852;1853;1854;1855;1856;1857;1858;1859;1860;1861;1862;1863;1864;1865;1866;1867;1868;1869;1870;1871;1872;1873;1874;1875;1876;1877;1878;1879;1880;1881;1882 1866 52 AAVPSGASTGIYEALELRDNDKTR Unmodified 2533.2772 0.27724408 520 P06733 ENO1 Alpha-enolase yes yes 0 0 0 2 By MS/MS By MS/MS 5.91 1.24 2 2 3 3 1 5 6 56.128 56.336 3;4 3.3547E-105 15989 20211116_3434_TMUAki_TMT10x_P_F6 307.76 296.77 98346000 189430000 1344300 129790000 207830000 308430000 158780000 357910000 330520000 293700000 224650000 91578000 176540000 7924500 139300000 198120000 304300000 168940000 359480000 324980000 289490000 219990000 19 19 12 19 19 19 19 19 19 19 19 56503000 98463000 985960 72774000 101300000 211140000 111930000 179580000 167420000 148160000 115780000 52618000 91780000 4685900 78125000 97459000 205850000 114700000 183230000 166060000 145990000 113290000 11 11 8 11 11 11 11 11 11 11 11 41842000 90969000 358390 57021000 106530000 97295000 46855000 178330000 163100000 145540000 108870000 38961000 84757000 3238500 61171000 100660000 98455000 54246000 176250000 158910000 143490000 106700000 8 8 4 8 8 8 8 8 8 8 8 61862000000 29498000000 32363000000 283 520 269 1526;1527;1528;1529;1530;1531;1532;1533;1534;1535;1536 1883;1884;1885;1886;1887;1888;1889;1890;1891;1892;1893;1894;1895;1896;1897;1898;1899;1900;1901;1902 1886 20 AAVPSIK Unmodified 684.41703 0.41702544 473 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.08 0.493 1 9 2 3 9 34.214 34.58 2 0.0016255 9668 20211116_3446_TMUAki_TMT10x_S_F7 135.35 85.311 15864000 27347000 61880 27627000 21429000 21300000 19918000 16944000 18116000 16576000 21431000 14770000 25519000 1361800 28070000 20507000 21992000 20227000 17436000 18626000 16204000 20571000 16 16 7 16 16 16 16 16 16 16 16 6198700 10310000 13100 10031000 11452000 12114000 8251600 6173900 6454600 6142800 7911600 5771200 9619200 547090 10284000 10898000 12079000 8481700 6576100 6696800 6000600 7586900 4 4 1 4 4 4 4 4 4 4 4 9665100 17037000 48781 17596000 9976600 9186000 11666000 10770000 11661000 10433000 13519000 8999200 15900000 814680 17785000 9609100 9912400 11745000 10860000 11930000 10204000 12984000 12 12 6 12 12 12 12 12 12 12 12 648470000 329960000 318510000 284 473 270 1537;1538;1539;1540;1541;1542;1543;1544;1545;1546;1547;1548 1903;1904;1905;1906;1907;1908;1909;1910;1911;1912;1913;1914;1915;1916;1917;1918;1919;1920;1921 1915 19 AAVQAAEVK Acetyl (Protein N-term) 927.50255 0.50254598 1760 Q15046 KARS Lysine--tRNA ligase yes yes 1 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 42.637 42.557 2 1.5759E-05 12627 20211116_3429_TMUAki_TMT10x_P_F2 70.919 56.933 1190900 1999800 0 2442500 1104300 1133300 1300700 1295000 1425600 1300100 1631600 1108600 1867700 74971 2440900 1062400 1238900 1312900 1308600 1452100 1269500 1567600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1190900 1999800 0 2442500 1104300 1133300 1300700 1295000 1425600 1300100 1631600 1108600 1867700 74971 2440900 1062400 1238900 1312900 1308600 1452100 1269500 1567600 1 1 0 1 1 1 1 1 1 1 1 71378000 0 71378000 285 1760 271 1549;1550;1551;1552 1922;1923;1924 1922 3 AAVQAAEVKVDGSEPK Acetyl (Protein N-term) 1639.8417 0.84171503 1760 Q15046 KARS Lysine--tRNA ligase yes yes 1 0 0 1 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 54.347 54.079 3 1.3065E-10 17714 20211116_3430_TMUAki_TMT10x_P_F3 100.41 83.531 12672000 20809000 101060 22359000 23392000 27694000 16405000 20567000 19864000 17568000 18549000 11800000 19423000 1288700 22780000 22260000 27724000 17113000 21181000 20010000 17281000 17934000 4 4 3 4 4 4 4 4 4 4 4 9644900 16072000 101060 16982000 20616000 25392000 14088000 15804000 15303000 13241000 14314000 8981100 15000000 1047500 17386000 19609000 25133000 14669000 16476000 15479000 13038000 13839000 3 3 3 3 3 3 3 3 3 3 3 3027200 4737300 0 5377000 2776300 2302500 2317700 4762800 4561300 4327000 4235100 2818600 4422800 241270 5394300 2650100 2590500 2444400 4705200 4530600 4243900 4095600 1 1 0 1 1 1 1 1 1 1 1 1055400000 748830000 306520000 286 1760 272 1553;1554;1555 1925;1926;1927;1928 1927 4 AAVTPGKK Unmodified 770.46504 0.46503826 729 P19338 NCL Nucleolin yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 30.084 30.117 3 0.031636 7894 20211116_3439_TMUAki_TMT10x_S_F1 57.59 32.714 901490 1500200 0 1155200 875650 1257100 994080 819240 812220 739480 1036900 839340 1398500 70203 1204400 842320 1264500 996510 852660 842230 725500 993350 2 2 0 2 2 2 2 2 2 2 2 446170 722000 0 568770 484580 809270 510760 395730 392360 362270 494070 415420 673130 35797 594660 465180 800300 513050 422220 407950 355190 473460 1 1 0 1 1 1 1 1 1 1 1 455320 778160 0 586470 391070 447830 483320 423510 419860 377210 542870 423920 725390 34407 609760 377140 464220 483460 430440 434280 370310 519880 1 1 0 1 1 1 1 1 1 1 1 36595000 13248000 23347000 287 729 273 1556;1557 1929;1930 1930 2 AAVTSLFAK Unmodified 906.51747 0.51746776 53 CON__Q3SX09 yes yes 0 0 0 0 By MS/MS By MS/MS 2.25 0.829 1 1 2 2 2 59.421 59.161 2 4.573E-06 19304 20211116_3429_TMUAki_TMT10x_P_F2 185.84 98.514 + 7493200 12790000 59583 12692000 23132000 28342000 13058000 27131000 30771000 21247000 16999000 6977100 11934000 864260 13189000 21929000 27880000 14320000 27470000 30040000 20994000 16825000 3 3 1 3 3 3 3 3 3 3 3 7493200 12790000 59583 12692000 23132000 28342000 13058000 27131000 30771000 21247000 16999000 6977100 11934000 864260 13189000 21929000 27880000 14320000 27470000 30040000 20994000 16825000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 717510000 717510000 0 288 53 274 1558;1559;1560;1561 1931;1932;1933;1934;1935 1931 5 AAVVENVVK Acetyl (Protein N-term) 969.5495 0.54949617 2364 Q92785;Q92785-2 DPF2 Zinc finger protein ubi-d4 yes no 1 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 63.503 63.238 2 3.8285E-05 22495 20211116_3441_TMUAki_TMT10x_S_F3 65.038 53.669 2218600 3724500 26054 3795700 3348100 5035200 2938300 2934500 3075400 3063100 3279400 2065900 3475600 224040 3885800 3201600 5005800 3006100 3093500 3129900 2986300 3157200 1 1 1 1 1 1 1 1 1 1 1 2218600 3724500 26054 3795700 3348100 5035200 2938300 2934500 3075400 3063100 3279400 2065900 3475600 224040 3885800 3201600 5005800 3006100 3093500 3129900 2986300 3157200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 462400000 298830000 163570000 289 2364 275 1562;1563;1564 1936;1937 1937 2 AAVVVSK Unmodified 672.41703 0.41702544 1740 Q14978;Q14978-2;Q14978-3 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 0 0 0 0 By MS/MS 6 0 2 2 24.39 24.423 2 0.03159 4085 20211116_3434_TMUAki_TMT10x_P_F6 79.116 51.591 1213800 2056200 2375.7 2076200 2051800 2263700 1504900 1216600 1254500 1129000 1508000 1130200 1918700 113810 2119400 1953700 2271000 1547300 1287200 1296200 1106300 1446800 2 2 1 2 2 2 2 2 2 2 2 1213800 2056200 2375.7 2076200 2051800 2263700 1504900 1216600 1254500 1129000 1508000 1130200 1918700 113810 2119400 1953700 2271000 1547300 1287200 1296200 1106300 1446800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 41734000 41734000 0 290 1740 276 1565;1566 1938;1939 1938 2 AAWEVDSGRR Unmodified 1145.5578 0.55776945 623 P11310;P11310-2 ACADM Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 1 By MS/MS 4 0 1 1 31.694 31.724 3 0.004945 7073 20211116_3431_TMUAki_TMT10x_P_F4 69.786 56.093 1771600 2485200 0 2098800 1884100 2265500 1520200 1158600 1237600 1140700 1954600 1649500 2317500 146470 2170900 1797300 2272800 1552300 1233300 1296900 1114800 1863400 1 1 0 1 1 1 1 1 1 1 1 1771600 2485200 0 2098800 1884100 2265500 1520200 1158600 1237600 1140700 1954600 1649500 2317500 146470 2170900 1797300 2272800 1552300 1233300 1296900 1114800 1863400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22694000 22694000 0 291 623 277 1567 1940 1940 1 AAYDIEVNTR Unmodified 1150.5619 0.56185177 373 O75955;O75955-2 FLOT1 Flotillin-1 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 39.806 39.677 2 0.00058907 11421 20211116_3430_TMUAki_TMT10x_P_F3 103.26 80.236 1012700 1596000 8371.9 1803200 1285700 1159800 1059000 1125600 1160700 977990 1368200 942970 1490000 95585 1815300 1227600 1220400 1089200 1141800 1183700 961230 1313400 3 3 3 3 3 3 3 3 3 3 3 393180 592850 6794 653560 670970 620120 428280 330100 331930 328630 455760 366140 553420 42820 661950 637670 627280 444130 350220 346290 321020 435820 2 2 2 2 2 2 2 2 2 2 2 619500 1003200 1577.9 1149700 614730 539630 630690 795540 828780 649350 912420 576830 936630 52765 1153400 589930 593120 645030 791560 837440 640210 877590 1 1 1 1 1 1 1 1 1 1 1 52395000 14366000 38029000 292 373 278 1568;1569 1941;1942;1943 1942 3 AAYFGIYDTAK Unmodified 1218.5921 0.59208927 502 P05141 SLC25A5 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed yes yes 0 0 0 0 By MS/MS 7 0 2 2 86.795 86.816 2 4.8297E-14 30748 20211116_3446_TMUAki_TMT10x_S_F7 150.85 129.95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 293 502 279 1570;1571 1944;1945 1944 2 AAYFGVYDTAK Unmodified 1204.5764 0.57643921 639;638 P12235;P12236 SLC25A4;SLC25A6 ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 0 0 0 0 By MS/MS 7 0 2 2 55.66 56.389 2;3 1.904E-17 17849 20211116_3435_TMUAki_TMT10x_P_F7 192.92 161.69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 294 638;639 280 1572;1573 1946;1947 1946 2 AAYLSDPR Unmodified 891.44503 0.4450311 1433 P78527 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 0 0 0 0 By matching By MS/MS 3.33 1.25 1 1 1 1 2 34.403 34.308 2 0.0068661 7160 20211116_3444_TMUAki_TMT10x_S_F5 91.093 52.855 736560 1246100 44601 1305100 785790 720860 750750 947450 1054000 805820 1079800 686140 1163000 103320 1318500 755280 775490 772740 947620 1059900 792840 1040800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 736560 1246100 44601 1305100 785790 720860 750750 947450 1054000 805820 1079800 686140 1163000 103320 1318500 755280 775490 772740 947620 1059900 792840 1040800 2 2 2 2 2 2 2 2 2 2 2 35901000 9457500 26444000 295 1433 281 1574;1575;1576 1948;1949 1949 2 AAYNPGQAVPWNAVK Unmodified 1584.8049 0.80487601 2181 Q8N163;Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 0 By MS/MS 1 0 1 1 59.577 59.577 3 8.9488E-07 17934 20211116_3428_TMUAki_TMT10x_P_F1 110.38 89.917 4552100 6855100 264940 7680500 6877700 8340600 6406200 4897100 4760300 4414800 5812900 4240500 6399600 656890 7787000 6598900 8378800 6471800 5138400 4952200 4331600 5574900 1 1 1 1 1 1 1 1 1 1 1 4552100 6855100 264940 7680500 6877700 8340600 6406200 4897100 4760300 4414800 5812900 4240500 6399600 656890 7787000 6598900 8378800 6471800 5138400 4952200 4331600 5574900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 338260000 338260000 0 296 2181 282 1577 1950 1950 1 AAYNVTLLNFMDPQK Oxidation (M) 1739.8553 0.8552566 2747 Q9C0B1 FTO Alpha-ketoglutarate-dependent dioxygenase FTO yes yes 0 0 1 0 By MS/MS 8 0 1 1 70.638 70.466 3 4.7686E-05 21918 20211116_3447_TMUAki_TMT10x_S_F8 91.076 71.498 2395300 4218700 105820 3476100 4264800 3737100 3269200 3738100 3506600 3434000 3329700 2231100 3933700 323390 3602600 4070600 3791100 3375500 3791400 3550700 3366400 3217500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2395300 4218700 105820 3476100 4264800 3737100 3269200 3738100 3506600 3434000 3329700 2231100 3933700 323390 3602600 4070600 3791100 3375500 3791400 3550700 3366400 3217500 1 1 1 1 1 1 1 1 1 1 1 266580000 0 266580000 297 2747 283 1578 1951 1951 2929 1 AAYPDLENPPLLVTPSQQAK Unmodified 2151.1212 0.12118435 1218 P54136;P54136-2 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 5.75 0.433 1 3 3 1 69.691 69.67 3;4 6.5912E-09 21513 20211116_3434_TMUAki_TMT10x_P_F6 102.33 92.636 15843000 25933000 229300 26748000 17662000 24416000 18474000 14614000 14032000 15610000 18344000 14753000 24202000 1475400 27195000 16964000 24797000 18559000 15383000 14622000 15205000 17563000 4 4 2 4 4 4 4 4 4 4 4 11594000 18859000 229300 19044000 13084000 20665000 14224000 11062000 10728000 11428000 13211000 10797000 17598000 1190000 19439000 12588000 20737000 14260000 11743000 11155000 11146000 12667000 3 3 2 3 3 3 3 3 3 3 3 4249500 7074300 0 7704300 4577700 3750400 4250700 3551900 3303600 4181900 5133400 3956100 6603500 285390 7756100 4376400 4060100 4299400 3640200 3467200 4058300 4895400 1 1 0 1 1 1 1 1 1 1 1 3063600000 2170100000 893510000 298 1218 284 1579;1580;1581;1582 1952;1953;1954;1955 1953 4 AAYWEEEPAEVRR Unmodified 1604.7583 0.75831975 3359 Q9Y6Y8;Q9Y6Y8-2 SEC23IP SEC23-interacting protein yes no 0 0 0 1 By MS/MS 2 0 1 1 40.215 39.955 3 1.7829E-18 11502 20211116_3429_TMUAki_TMT10x_P_F2 151.7 133.56 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 299 3359 285 1583 1956 1956 1 AAYYPPSQIAQLRPSPR Unmodified 1914.0112 0.011180394 634 P11940;P11940-2 PABPC1 Polyadenylate-binding protein 1 yes no 0 0 0 1 By MS/MS 4 0 1 1 47.681 47.855 3 5.3129E-15 13919 20211116_3442_TMUAki_TMT10x_S_F4 128.45 107.22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 300 634 286 1584 1957 1957 1 ACADATLSQITNNIDPVGR Unmodified 2014.9742 0.97420254 1376 P62873;P62873-2 GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.707 2 4 2 4 4 68.265 68.272 2;3 4.0811E-90 21062 20211116_3444_TMUAki_TMT10x_S_F5 316.1 265.9 30898000 54939000 436360 49465000 38552000 52265000 40848000 40763000 37494000 40222000 43509000 28772000 51243000 2968500 50891000 37042000 52813000 41210000 42009000 38504000 39305000 41785000 10 10 5 10 10 10 10 10 10 10 10 15586000 27214000 250460 24510000 18912000 34193000 21810000 18667000 17515000 19407000 20901000 14514000 25383000 1505200 25340000 18218000 33887000 21838000 19785000 18127000 18923000 20057000 5 5 2 5 5 5 5 5 5 5 5 15312000 27725000 185900 24955000 19640000 18072000 19038000 22096000 19979000 20816000 22608000 14258000 25860000 1463300 25551000 18825000 18926000 19372000 22224000 20377000 20382000 21728000 5 5 3 5 5 5 5 5 5 5 5 6594300000 3364900000 3229400000 301 1376 287 1585;1586;1587;1588;1589;1590;1591;1592 1958;1959;1960;1961;1962;1963;1964;1965;1966;1967 1966 10 ACALQVLSAILEGSK Unmodified 1558.8389 0.83887826 1968 Q6AI08 HEATR6 HEAT repeat-containing protein 6 yes yes 0 0 0 0 By MS/MS 4 0.816 1 1 1 3 81.806 81.796 3 6.5444E-07 27811 20211116_3442_TMUAki_TMT10x_S_F4 113.4 90.517 2952000 4960300 26273 4610500 3404300 3358200 3506800 2521200 2265900 2814000 3817500 2748700 4627100 274320 4709500 3268300 3479600 3513300 2614400 2414600 2736300 3634600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2952000 4960300 26273 4610500 3404300 3358200 3506800 2521200 2265900 2814000 3817500 2748700 4627100 274320 4709500 3268300 3479600 3513300 2614400 2414600 2736300 3634600 2 2 1 2 2 2 2 2 2 2 2 720130000 0 720130000 302 1968 288 1593;1594;1595 1968;1969 1968 2 ACANPAAGSVILLENLR Unmodified 1767.9302 0.93015288 473 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.79 1.61 1 5 4 4 14 10 18 77.246 77.252 2;3 2.4187E-124 22463 20211116_3447_TMUAki_TMT10x_S_F8 384.93 356.84 102290000 174310000 460330 159900000 131070000 150630000 121820000 126780000 115420000 124830000 134550000 95231000 162590000 7565200 164010000 125360000 153490000 123850000 130050000 118380000 121990000 129200000 35 35 14 35 35 35 35 35 35 35 35 37328000 61229000 57141 56931000 41279000 77905000 47518000 44614000 40955000 43609000 46944000 34752000 57117000 2638000 58696000 39703000 77323000 47670000 47011000 42164000 42632000 45100000 9 9 2 9 9 9 9 9 9 9 9 64961000 113080000 403190 102970000 89790000 72728000 74299000 82170000 74463000 81218000 87602000 60479000 105480000 4927200 105310000 85653000 76168000 76179000 83040000 76213000 79361000 84100000 26 26 12 26 26 26 26 26 26 26 26 82349000000 42661000000 39689000000 303 473 289 1596;1597;1598;1599;1600;1601;1602;1603;1604;1605;1606;1607;1608;1609;1610;1611;1612;1613;1614;1615;1616;1617;1618;1619;1620;1621;1622;1623 1970;1971;1972;1973;1974;1975;1976;1977;1978;1979;1980;1981;1982;1983;1984;1985;1986;1987;1988;1989;1990;1991;1992;1993;1994;1995;1996;1997;1998;1999;2000;2001;2002;2003;2004;2005;2006;2007;2008;2009;2010;2011 1996 42 ACARPLISVYSEK Acetyl (Protein N-term) 1534.7814 0.78136338 953 P36578 RPL4 60S ribosomal protein L4 yes yes 1 0 0 1 By MS/MS By MS/MS 5.71 1.03 1 2 2 2 4 3 53.95 54.158 2 3.0591E-28 16977 20211116_3435_TMUAki_TMT10x_P_F7 65.695 36.737 63864000 100910000 20023 112890000 60886000 58888000 49560000 48939000 55494000 54805000 71039000 59454000 94207000 4047600 113510000 58018000 63098000 51047000 50435000 56747000 53283000 68048000 7 7 1 7 7 7 7 7 7 7 7 18601000 29592000 0 32570000 26445000 33521000 19866000 15269000 17381000 16244000 19629000 17318000 27624000 1473300 33030000 25180000 33680000 20418000 16475000 17871000 15825000 18866000 3 3 0 3 3 3 3 3 3 3 3 45263000 71320000 20023 80323000 34442000 25367000 29694000 33670000 38112000 38560000 51410000 42136000 66583000 2574300 80485000 32838000 29418000 30629000 33961000 38876000 37459000 49182000 4 4 1 4 4 4 4 4 4 4 4 11616000000 5767300000 5848800000 304 953 290 1624;1625;1626;1627;1628;1629;1630 2012;2013;2014;2015;2016;2017;2018;2019 2015 8 ACARPLISVYSEKGESSGK Acetyl (Protein N-term) 2080.0259 0.02590376 953 P36578 RPL4 60S ribosomal protein L4 yes yes 1 0 0 2 By matching By MS/MS 6.5 0.5 2 2 1 3 49.248 49.6 3;4 5.4869E-12 15676 20211116_3446_TMUAki_TMT10x_S_F7 58.672 46.757 10943000 22684000 231670 16594000 17691000 16682000 10396000 47827000 38155000 34339000 28499000 10190000 21144000 1217700 17360000 16794000 17689000 11786000 46652000 37259000 34093000 27790000 4 4 4 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10943000 22684000 231670 16594000 17691000 16682000 10396000 47827000 38155000 34339000 28499000 10190000 21144000 1217700 17360000 16794000 17689000 11786000 46652000 37259000 34093000 27790000 4 4 4 4 4 4 4 4 4 4 4 2311200000 266970000 2044300000 305 953 291 1631;1632;1633;1634 2020;2021;2022;2023 2023 4 ACCPLEGVRPSPQQTEYR Unmodified 2146.9888 0.98880675 2170 Q8IZ69;Q8IZ69-2 TRMT2A tRNA (uracil-5-)-methyltransferase homolog A yes no 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 37.344 37.419 3 3.5377E-50 9695 20211116_3433_TMUAki_TMT10x_P_F5 221.47 202.2 719060 1149700 9069.1 1550400 1356900 1437800 845360 943130 1053800 778990 1030900 669550 1074300 73067 1551700 1288500 1460600 890680 978960 1062100 767560 995190 2 2 1 2 2 2 2 2 2 2 2 454350 727400 9069.1 1006900 1195400 1289600 715790 621310 717410 516090 647570 423110 679790 56500 1011600 1134700 1281300 751190 662290 727290 508370 626850 1 1 1 1 1 1 1 1 1 1 1 264710 422330 0 543560 161490 148220 129570 321820 336370 262900 383340 246440 394530 16567 540050 153780 179290 139500 316680 334820 259190 368340 1 1 0 1 1 1 1 1 1 1 1 118060000 86431000 31625000 306 2170 292 1635;1636 2024;2025 2024 2 ACDLGHIWACANASR Unmodified 1700.7511 0.75114266 2420 Q96BR5 COA7 Cytochrome c oxidase assembly factor 7 yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 50.838 51.035 3 0.00053781 14033 20211116_3447_TMUAki_TMT10x_S_F8 73.833 66.109 3853100 7226900 71430 6899500 4395400 4092800 3600400 7359600 6342600 5967900 6443900 3588100 6742200 393610 7019800 4198900 4416000 3778500 7276200 6336100 5885900 6213000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3853100 7226900 71430 6899500 4395400 4092800 3600400 7359600 6342600 5967900 6443900 3588100 6742200 393610 7019800 4198900 4416000 3778500 7276200 6336100 5885900 6213000 2 2 2 2 2 2 2 2 2 2 2 329850000 0 329850000 307 2420 293 1637;1638;1639 2026;2027;2028 2027 3 ACDSVTSNVLPLLLEQFHK Unmodified 2170.1092 0.10923946 2564 Q96T76;Q96T76-9;Q96T76-8 MMS19 MMS19 nucleotide excision repair protein homolog yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 79.152 79.14 3 2.1373E-12 25447 20211116_3447_TMUAki_TMT10x_S_F8 129.11 109.53 8278800 12951000 95116 12616000 8419300 12928000 9774200 7600100 7321900 8012200 9500300 7709100 12083000 773190 12899000 8112400 13032000 9767700 8008500 7633400 7808200 9097200 3 3 2 3 3 3 3 3 3 3 3 5522500 8149200 29255 8276900 5154100 9834800 6196500 4941500 5071300 5389600 6011000 5142200 7604500 476170 8458100 4969700 9813000 6196000 5284600 5241800 5245300 5769500 2 2 1 2 2 2 2 2 2 2 2 2756300 4801400 65861 4339100 3265200 3093600 3577800 2658600 2250600 2622600 3489300 2566900 4478500 297030 4440700 3142600 3218600 3571700 2723900 2391700 2562800 3327700 1 1 1 1 1 1 1 1 1 1 1 2895600000 1887300000 1008300000 308 2564 294 1640;1641 2029;2030;2031 2031 3 ACEFAGFQCQIQFGPHNEQK Unmodified 2395.0474 0.047384258 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By matching 7 0 2 1 1 57.615 58.243 3 4.4057E-09 18644 20211116_3435_TMUAki_TMT10x_P_F7 108.71 94.1 2897400 4840500 0 4691900 3299200 5706300 3546300 3186900 2741500 2728000 4016300 2697700 4516200 236950 4812200 3169000 5694000 3559400 3353600 2869500 2683200 3834900 1 1 0 1 1 1 1 1 1 1 1 2897400 4840500 0 4691900 3299200 5706300 3546300 3186900 2741500 2728000 4016300 2697700 4516200 236950 4812200 3169000 5694000 3559400 3353600 2869500 2683200 3834900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2026100000 937630000 1088400000 309 3293 295 1642;1643 2032 2032 1 ACFGGLFANLIRPGDAK Unmodified 1805.9247 0.92467357 2915 Q9NR09 BIRC6 Baculoviral IAP repeat-containing protein 6 yes yes 0 0 0 1 By MS/MS 5 0 1 1 75.439 75.469 3 0.00044953 25099 20211116_3433_TMUAki_TMT10x_P_F5 69.188 50.113 4240300 6764300 45905 6784700 4357300 7811800 4900300 4096500 3392100 4057100 4688500 3948500 6311900 395970 6935400 4194400 7811300 4895500 4351400 3562900 3964000 4482700 2 2 2 2 2 2 2 2 2 2 2 4240300 6764300 45905 6784700 4357300 7811800 4900300 4096500 3392100 4057100 4688500 3948500 6311900 395970 6935400 4194400 7811300 4895500 4351400 3562900 3964000 4482700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 371510000 371510000 0 310 2915 296 1644 2033;2034 2034 2 ACGDSTLTQITAGLDPVGR Unmodified 1930.9418 0.94183978 1377 P62879 GNB2 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 69.3 69.362 3 1.8386E-07 21458 20211116_3444_TMUAki_TMT10x_S_F5 101.5 87.841 14386000 22352000 236640 22704000 16541000 21611000 15907000 14759000 13245000 14397000 17914000 13396000 20858000 1385800 23121000 15855000 21929000 16086000 15341000 13757000 14076000 17136000 5 5 3 5 5 5 5 5 5 5 5 9264300 14083000 153960 14516000 11206000 17096000 10891000 9987400 8578400 9347200 11808000 8627000 13142000 924940 14817000 10745000 17097000 10992000 10494000 8942800 9155400 11291000 3 3 2 3 3 3 3 3 3 3 3 5121800 8269400 82679 8188300 5334800 4515300 5015800 4771700 4666800 5050000 6105400 4769100 7715900 460890 8304200 5109400 4832200 5093600 4846900 4814000 4920700 5845200 2 2 1 2 2 2 2 2 2 2 2 1962000000 1237400000 724640000 311 1377 297 1645;1646;1647;1648 2035;2036;2037;2038;2039;2040 2040 6 ACGKFEISAIR Unmodified 1250.6441 0.64414162 2466 Q96G03 PGM2 Phosphoglucomutase-2 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 1 1 1 1 44.82 44.787 3 0.036627 11967 20211116_3436_TMUAki_TMT10x_P_F8 50.897 23.276 3257000 5242200 0 5467500 5647000 5949200 3652100 4745600 4273200 4004900 4480700 3032400 4892400 277350 5569000 5362800 6003900 3828000 4863600 4327400 3941900 4316000 2 2 0 2 2 2 2 2 2 2 2 2151600 3363500 0 3546100 4427000 4899400 2675000 2872000 2708800 2558300 2815900 2003200 3139200 192230 3624900 4199600 4862200 2806000 3012900 2758100 2511500 2713100 1 1 0 1 1 1 1 1 1 1 1 1105400 1878700 0 1921400 1220000 1049700 977140 1873600 1564400 1446500 1664800 1029200 1753200 85114 1944100 1163200 1141700 1022000 1850600 1569400 1430400 1602800 1 1 0 1 1 1 1 1 1 1 1 171500000 103500000 68005000 312 2466 298 1649;1650 2041;2042 2041 2 ACGLNFADLMAR Unmodified 1337.622 0.62202597 2580 Q99536 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes yes 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 69.074 69.369 2 1.9547E-09 22072 20211116_3436_TMUAki_TMT10x_P_F8 157.97 137.42 5737700 8913400 37841 9143800 6435300 9641800 7046100 4293000 4410300 4644100 6594600 5342600 8318000 515610 9319400 6187700 9671500 7033600 4645300 4679500 4521200 6294000 2 2 1 2 2 2 2 2 2 2 2 5737700 8913400 37841 9143800 6435300 9641800 7046100 4293000 4410300 4644100 6594600 5342600 8318000 515610 9319400 6187700 9671500 7033600 4645300 4679500 4521200 6294000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 763970000 763970000 0 313 2580 299 1651;1652 2043;2044 2044 2 ACGLVASNLNLKPGECLR Acetyl (Protein N-term) 2013.0136 0.013564934 572 P09382 LGALS1 Galectin-1 yes yes 1 0 0 1 By MS/MS By MS/MS 7 0 4 2 2 64.419 64.957 2;3 3.83E-50 21976 20211116_3446_TMUAki_TMT10x_S_F7 158.58 148.57 47535000 78963000 832660 76077000 57996000 70103000 53491000 49993000 43498000 50691000 54569000 44263000 73670000 4532200 77726000 55525000 71332000 54185000 51865000 45082000 49478000 52298000 7 7 3 7 7 7 7 7 7 7 7 21328000 34481000 422890 34249000 25613000 43127000 25719000 23020000 19102000 23634000 25026000 19862000 32174000 2208900 35089000 24586000 42935000 25878000 24438000 19933000 23057000 23958000 3 3 2 3 3 3 3 3 3 3 3 26207000 44481000 409770 41828000 32384000 26975000 27772000 26974000 24396000 27056000 29543000 24401000 41496000 2323300 42637000 30939000 28397000 28307000 27427000 25149000 26421000 28340000 4 4 1 4 4 4 4 4 4 4 4 3748200000 2123400000 1624800000 314 572 300 1653;1654;1655;1656 2045;2046;2047;2048;2049;2050;2051 2050 7 ACGNFGIPCELR Unmodified 1392.6278 0.62783962 767 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 0 0 By MS/MS By MS/MS 5.25 1.16 1 2 4 3 2 6 6 53.442 53.636 2;3 4.4045E-17 14876 20211116_3434_TMUAki_TMT10x_P_F6 215.83 171.48 73991000 125170000 1530500 149110000 96009000 95095000 70014000 86041000 71788000 77634000 99671000 68902000 116890000 7668500 149620000 91484000 100000000 72432000 87686000 73943000 76167000 95285000 13 13 9 13 13 13 13 13 13 13 13 24759000 41522000 368750 47539000 52132000 57010000 36770000 29239000 24693000 26486000 31500000 23055000 38767000 2766100 48214000 49621000 56870000 37727000 31047000 25891000 25981000 30176000 5 5 4 5 5 5 5 5 5 5 5 49232000 83650000 1161800 101570000 43877000 38085000 33243000 56802000 47095000 51148000 68171000 45847000 78122000 4902400 101400000 41863000 43135000 34705000 56639000 48053000 50187000 65110000 8 8 5 8 8 8 8 8 8 8 8 18278000000 10453000000 7824600000 315 767 301 1657;1658;1659;1660;1661;1662;1663;1664;1665;1666;1667;1668 2052;2053;2054;2055;2056;2057;2058;2059;2060;2061;2062;2063;2064 2055 13 ACGVDFEIR Unmodified 1065.4913 0.49132937 900 P32121;P32121-5;P32121-2;P32121-3;P32121-4 ARRB2 Beta-arrestin-2 yes no 0 0 0 0 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 47.725 47.681 2 0.00117 16220 20211116_3441_TMUAki_TMT10x_S_F3 85.161 56.012 7328100 11458000 137270 13821000 11014000 11236000 8026000 10623000 9683000 8114500 10920000 6824100 10700000 778730 13894000 10494000 11592000 8348700 10756000 9822200 8028400 10496000 3 3 2 3 3 3 3 3 3 3 3 3913800 6249400 84529 6882500 7679100 8665200 5227500 5251600 4789900 4258400 5401000 3644700 5833700 447610 7003300 7306000 8640900 5417100 5482100 4913800 4199900 5191300 2 2 1 2 2 2 2 2 2 2 2 3414300 5208400 52743 6938200 3335200 2570400 2798500 5370900 4893100 3856100 5519000 3179400 4866400 331110 6890600 3187700 2950900 2931600 5274100 4908400 3828500 5304600 1 1 1 1 1 1 1 1 1 1 1 337860000 231900000 105970000 316 900 302 1669;1670;1671;1672 2065;2066;2067;2068 2067 4 ACGVSRPVIACSVTIK Unmodified 1716.9015 0.90149529 1245 P55769 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.957 2 4 4 2 6 6 44.82 44.728 3;4 1.0326E-29 12083 20211116_3440_TMUAki_TMT10x_S_F2 197.14 150.39 61972000 93686000 881460 103000000 92010000 93464000 64885000 74690000 67603000 67639000 78074000 57709000 87454000 6346000 104270000 87593000 95381000 67318000 76676000 69027000 66350000 74991000 16 16 14 16 16 16 16 16 16 16 16 33368000 48009000 627050 53966000 63001000 70311000 38757000 39870000 37424000 35753000 41705000 31073000 44820000 3743700 54878000 59836000 69936000 40539000 41950000 38283000 35088000 40098000 8 8 7 8 8 8 8 8 8 8 8 28605000 45677000 254410 49029000 29009000 23153000 26128000 34820000 30179000 31886000 36370000 26636000 42634000 2602300 49394000 27757000 25445000 26778000 34726000 30744000 31262000 34893000 8 8 7 8 8 8 8 8 8 8 8 12216000000 7748400000 4468100000 317 1245 303 1673;1674;1675;1676;1677;1678;1679;1680;1681;1682;1683;1684 2069;2070;2071;2072;2073;2074;2075;2076;2077;2078;2079;2080;2081;2082;2083;2084 2078 16 ACILCVHPR Unmodified 1124.5583 0.5583035 1726 Q14690 PDCD11 Protein RRP5 homolog yes yes 0 0 0 0 By MS/MS By matching 1 0 2 1 1 35.045 35.028 3 0.00010811 8006 20211116_3428_TMUAki_TMT10x_P_F1 130.22 113.59 762140 1073400 2876.1 1099100 1365800 1381700 882750 739220 758790 721620 986290 709650 1001700 74322 1123700 1297600 1375700 916830 783480 785440 705500 944390 2 2 2 2 2 2 2 2 2 2 2 762140 1073400 2876.1 1099100 1365800 1381700 882750 739220 758790 721620 986290 709650 1001700 74322 1123700 1297600 1375700 916830 783480 785440 705500 944390 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 88257000 39541000 48716000 318 1726 304 1685;1686 2085;2086 2085 2 ACIPVGLLGK Unmodified 1026.5896 0.58958685 2476 Q96GQ7 DDX27 Probable ATP-dependent RNA helicase DDX27 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 65.128 64.823 2 6.3253E-10 20426 20211116_3440_TMUAki_TMT10x_S_F2 170.06 119.45 5020700 8706600 12533 7752000 8195800 11463000 6698900 6759300 6302600 6484400 7251100 4674900 8120600 472400 8031200 7821600 11343000 6861000 7101600 6462800 6344300 6965500 1 1 1 1 1 1 1 1 1 1 1 5020700 8706600 12533 7752000 8195800 11463000 6698900 6759300 6302600 6484400 7251100 4674900 8120600 472400 8031200 7821600 11343000 6861000 7101600 6462800 6344300 6965500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 377660000 377660000 0 319 2476 305 1687;1688 2087;2088 2088 2 ACLDTAVENMPSLK Oxidation (M) 1563.7273 0.7272789 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 1 0 By MS/MS 4 0 1 1 50.844 51.006 3 9.3551E-05 14824 20211116_3431_TMUAki_TMT10x_P_F4 89.013 68.906 9778600 14239000 56066 15852000 19303000 21196000 11999000 12561000 12163000 10178000 13102000 9104400 13292000 891050 16137000 18322000 21069000 12558000 13135000 12400000 10039000 12610000 2 2 1 2 2 2 2 2 2 2 2 9778600 14239000 56066 15852000 19303000 21196000 11999000 12561000 12163000 10178000 13102000 9104400 13292000 891050 16137000 18322000 21069000 12558000 13135000 12400000 10039000 12610000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 324220000 324220000 0 320 1092 306 1689 2089;2090 2090 1421 2 ACLDTAVENMPSLK Unmodified 1547.7324 0.73236428 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 64.5 64.54 3 2.5078E-09 19806 20211116_3445_TMUAki_TMT10x_S_F6 126.32 104.76 26070000 43748000 212010 49125000 28489000 29546000 24322000 20434000 17158000 21534000 29860000 24274000 40841000 2290000 49443000 27218000 31102000 24667000 21269000 18220000 20986000 28412000 5 5 3 5 5 5 5 5 5 5 5 10535000 17472000 60682 19351000 15689000 18461000 13474000 8480100 7159900 8529200 11361000 9809400 16311000 950690 19596000 14988000 18637000 13588000 9127200 7709300 8328000 10830000 2 2 1 2 2 2 2 2 2 2 2 15534000 26275000 151330 29773000 12801000 11085000 10848000 11954000 9998500 13005000 18499000 14465000 24531000 1339300 29847000 12231000 12465000 11079000 12142000 10511000 12658000 17582000 3 3 2 3 3 3 3 3 3 3 3 1844800000 780850000 1063900000 321 1092 306 1690;1691;1692;1693 2091;2092;2093;2094;2095 2095 5 ACLDYPVTSVLPPASLCK Unmodified 1989.9904 0.99036988 1211 P53801 PTTG1IP Pituitary tumor-transforming gene 1 protein-interacting protein yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 75.662 75.676 3 3.8531E-12 24653 20211116_3436_TMUAki_TMT10x_P_F8 128.9 102.46 8414800 14001000 109140 11582000 7959200 17191000 9566900 10360000 9956500 10222000 10528000 7835800 13056000 568840 12070000 7678700 17013000 9632200 10874000 10132000 9988900 10138000 3 3 2 3 3 3 3 3 3 3 3 8414800 14001000 109140 11582000 7959200 17191000 9566900 10360000 9956500 10222000 10528000 7835800 13056000 568840 12070000 7678700 17013000 9632200 10874000 10132000 9988900 10138000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 567370000 567370000 0 322 1211 307 1694;1695 2096;2097;2098;2099 2097 4 ACLISLGYDVENDRQGEAEFNR Unmodified 2555.1711 0.17106445 235 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 1 By MS/MS By MS/MS 3.17 1.07 2 2 1 1 3 3 63.182 63.023 3 1.7849E-44 22454 20211116_3441_TMUAki_TMT10x_S_F3 201.61 191.42 18154000 30880000 58250 32225000 21504000 27754000 22057000 20966000 18780000 21969000 24719000 16904000 28820000 1568800 32713000 20634000 28397000 22243000 21690000 19460000 21415000 23661000 5 5 2 5 5 5 5 5 5 5 5 6797700 11452000 0 11369000 7676500 14744000 8712100 7641500 7075000 8234700 8847400 6329200 10685000 555570 11655000 7385300 14653000 8732200 8145500 7332100 8018000 8479900 2 2 0 2 2 2 2 2 2 2 2 11357000 19429000 58250 20855000 13828000 13009000 13345000 13325000 11705000 13734000 15871000 10574000 18135000 1013200 21058000 13249000 13744000 13511000 13544000 12128000 13397000 15181000 3 3 2 3 3 3 3 3 3 3 3 3567500000 1346800000 2220600000 323 235 308 1696;1697;1698;1699;1700;1701 2100;2101;2102;2103;2104 2103 5 ACNCLLLK Unmodified 990.49906 0.49905728 568;661 P09104;P09104-2;P13929;P13929-3;P13929-2 ENO2;ENO3 Gamma-enolase;Beta-enolase no no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 49.269 49.266 2 0.0020803 13835 20211116_3436_TMUAki_TMT10x_P_F8 128.57 42.48 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 324 568;661 309 1702;1703 2105;2106 2105 2 ACNQLGQFLQHR Unmodified 1470.715 0.71501515 400 O94973;O94973-2;O94973-3;O95782;O95782-2 AP2A2;AP2A1 AP-2 complex subunit alpha-2;AP-2 complex subunit alpha-1 yes no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 44.658 44.586 3 4.6324E-09 11828 20211116_3428_TMUAki_TMT10x_P_F1 144.55 94.258 1330100 2221700 0 2414200 2043700 2095100 1539300 1896300 1809900 1612200 2079800 1238000 2073800 67500 2444500 1943500 2149500 1596100 1929500 1839000 1586300 1998000 2 2 0 2 2 2 2 2 2 2 2 585930 1038700 0 1146800 1357100 1534800 1029600 843780 851230 815130 1028300 545230 969610 18920 1168100 1290400 1524100 1055900 891920 880070 797280 986510 1 1 0 1 1 1 1 1 1 1 1 744150 1183100 0 1267500 686600 560220 509730 1052500 958660 797120 1051500 692780 1104200 48580 1276500 653100 625410 540190 1037600 958920 789030 1011500 1 1 0 1 1 1 1 1 1 1 1 428750000 255440000 173310000 325 400 310 1704;1705;1706 2107;2108 2107 2 ACPPGTAACLVR Unmodified 1271.6115 0.61146128 630 P11717 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 36.042 36.253 2 6.1546E-15 9699 20211116_3435_TMUAki_TMT10x_P_F7 183.67 155.93 187970 279080 3257.4 331410 432460 386720 234330 165860 199560 161690 258590 175040 260610 22044 335220 409880 385590 246980 179660 206630 158090 247630 2 2 2 2 2 2 2 2 2 2 2 187970 279080 3257.4 331410 432460 386720 234330 165860 199560 161690 258590 175040 260610 22044 335220 409880 385590 246980 179660 206630 158090 247630 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25397000 25397000 0 326 630 311 1707;1708 2109;2110 2110 2 ACPRPEGLNFQDLK Unmodified 1643.809 0.80897511 689 P15927;P15927-2;P15927-3 RPA2 Replication protein A 32 kDa subunit yes no 0 0 0 1 By MS/MS By MS/MS 6.29 1.03 2 2 2 1 3 4 50.506 50.798 3 4.0969E-21 16138 20211116_3446_TMUAki_TMT10x_S_F7 179.79 142.24 52385000 86207000 302830 110820000 71886000 82042000 53046000 59572000 57130000 59262000 68891000 48776000 80532000 4767500 110890000 68464000 84849000 54918000 61694000 58358000 57891000 66093000 7 7 5 7 7 7 7 7 7 7 7 28692000 45952000 118150 58558000 56862000 64444000 39197000 31916000 30645000 32121000 36694000 26716000 42926000 2855800 58936000 54083000 64557000 40419000 34098000 31765000 31363000 35210000 4 4 3 4 4 4 4 4 4 4 4 23692000 40255000 184670 52265000 15024000 17598000 13848000 27657000 26485000 27141000 32198000 22060000 37607000 1911700 51952000 14381000 20292000 14499000 27596000 26594000 26529000 30883000 3 3 2 3 3 3 3 3 3 3 3 9329300000 5498000000 3831300000 327 689 312 1709;1710;1711;1712;1713;1714;1715 2111;2112;2113;2114;2115;2116;2117;2118 2117 8 ACQIFVR Unmodified 892.45891 0.45890703 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 38.635 38.951 2 0.0022615 11737 20211116_3439_TMUAki_TMT10x_S_F1 127.95 78.636 9371300 15491000 202410 17301000 15359000 11670000 9722000 13316000 12117000 11727000 14351000 8726900 14462000 1022500 17438000 14595000 12273000 10230000 13408000 12301000 11519000 13775000 7 7 5 7 7 7 7 7 7 7 7 3355000 5284900 19149 5879300 9548100 6970100 4317900 3962200 3636800 3900900 4636200 3123800 4933600 355800 5972200 9023100 6965800 4632200 4178500 3765100 3812300 4441400 3 3 1 3 3 3 3 3 3 3 3 6016300 10207000 183260 11421000 5810500 4700200 5404100 9353400 8480100 7826500 9714600 5603100 9528300 666700 11465000 5572200 5307300 5598100 9229300 8536200 7706600 9333100 4 4 4 4 4 4 4 4 4 4 4 568650000 191840000 376820000 328 1171 313 1716;1717;1718;1719;1720;1721 2119;2120;2121;2122;2123;2124;2125;2126 2124 8 ACQLSVVVDDKK Unmodified 1360.7021 0.70205043 811 P26358;P26358-2;P26358-3 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 0 0 0 1 By matching By MS/MS 6 0.707 1 2 1 1 3 46.609 46.745 3 4.4543E-08 12463 20211116_3445_TMUAki_TMT10x_S_F6 139.3 109.24 7940200 12908000 76287 13411000 7756200 6814100 6828100 7482200 7174900 6996600 9298900 7393500 12046000 692900 13547000 7416100 7363700 6985300 7559100 7359500 6853300 8904600 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7940200 12908000 76287 13411000 7756200 6814100 6828100 7482200 7174900 6996600 9298900 7393500 12046000 692900 13547000 7416100 7363700 6985300 7559100 7359500 6853300 8904600 3 3 1 3 3 3 3 3 3 3 3 765480000 354480000 411000000 329 811 314 1722;1723;1724;1725 2127;2128;2129;2130 2129 4 ACQSIYPLHDVFVR Unmodified 1703.8454 0.84536062 1305 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 0 0 By MS/MS By MS/MS 5.24 2.56 2 2 2 1 2 4 4 9 8 55.052 55.163 2;3 4.0288E-43 15702 20211116_3447_TMUAki_TMT10x_S_F8 265.53 216.18 108630000 187360000 2219600 182570000 134300000 157980000 118490000 121930000 118370000 118700000 138960000 101150000 174810000 10876000 186220000 128470000 161650000 121010000 125690000 121150000 116060000 133420000 23 23 14 23 23 23 23 23 23 23 23 53290000 86807000 719840 84225000 79634000 106590000 67668000 55752000 55837000 55686000 64148000 49620000 80991000 5033800 86440000 76072000 106060000 68898000 59248000 57617000 54389000 61624000 13 13 8 13 13 13 13 13 13 13 13 55336000 100550000 1499800 98342000 54663000 51395000 50825000 66174000 62530000 63012000 74816000 51533000 93819000 5842400 99779000 52399000 55586000 52117000 66441000 63537000 61672000 71792000 10 10 6 10 10 10 10 10 10 10 10 53787000000 31598000000 22189000000 330 1305 315 1726;1727;1728;1729;1730;1731;1732;1733;1734;1735;1736;1737;1738;1739;1740;1741;1742 2131;2132;2133;2134;2135;2136;2137;2138;2139;2140;2141;2142;2143;2144;2145;2146;2147;2148;2149;2150;2151;2152;2153;2154;2155 2155 25 ACQSIYPLHDVFVRK Unmodified 1831.9403 0.94032364 1305 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 0 1 By MS/MS By MS/MS 3 2.14 1 3 2 1 5 2 50.739 50.589 3;4 1.3141E-19 16251 20211116_3430_TMUAki_TMT10x_P_F3 171.21 151.89 33214000 50654000 90572 63024000 44509000 50112000 31953000 32917000 30503000 31041000 36820000 30923000 47312000 2658200 63228000 42345000 51461000 33023000 34279000 31319000 30394000 35323000 9 9 2 9 9 9 9 9 9 9 9 21223000 32415000 90572 40398000 34740000 42381000 23884000 21608000 18891000 19618000 23218000 19759000 30276000 1803700 40678000 33028000 42586000 24640000 22959000 19591000 19242000 22263000 6 6 2 6 6 6 6 6 6 6 6 11991000 18239000 0 22626000 9768900 7731600 8068300 11309000 11612000 11423000 13602000 11164000 17035000 854510 22549000 9317100 8875500 8382700 11321000 11729000 11152000 13060000 3 3 0 3 3 3 3 3 3 3 3 13268000000 8920200000 4347400000 331 1305 316 1743;1744;1745;1746;1747;1748;1749 2156;2157;2158;2159;2160;2161;2162;2163;2164 2160 9 ACTILLR Unmodified 845.47931 0.47930812 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 By MS/MS By MS/MS 5.5 2.69 2 2 2 2 4 4 42.463 42.626 2 0.0025686 12401 20211116_3435_TMUAki_TMT10x_P_F7 124.37 49.063 27196000 42601000 150760 46456000 46332000 42574000 28384000 31834000 29612000 27432000 34735000 25321000 39766000 2387200 47063000 43965000 43370000 29768000 32777000 30253000 26973000 33349000 9 9 5 9 9 9 9 9 9 9 9 16844000 25441000 96400 28658000 36059000 34232000 19144000 20352000 18781000 17650000 21550000 15683000 23751000 1661400 29092000 34150000 34218000 20291000 21313000 19221000 17349000 20703000 5 5 3 5 5 5 5 5 5 5 5 10352000 17161000 54360 17798000 10273000 8341800 9240400 11482000 10831000 9781900 13186000 9638100 16015000 725820 17971000 9815500 9151900 9476200 11464000 11032000 9623500 12647000 4 4 2 4 4 4 4 4 4 4 4 2941100000 1839400000 1101700000 332 1094 317 1750;1751;1752;1753;1754;1755;1756;1757 2165;2166;2167;2168;2169;2170;2171 2165 7 ACTQPRPNYASNFSVIGAR Unmodified 2108.0222 0.022155786 150 O14976;O14976-2 GAK Cyclin-G-associated kinase yes no 0 0 0 1 By MS/MS By MS/MS 3 0 2 1 1 43.368 43.228 3 1.382E-50 14408 20211116_3441_TMUAki_TMT10x_S_F3 226.45 191.52 1283000 2276100 15436 2624100 1894000 2077300 1336800 1645800 1680100 1453000 1737700 1194700 2125100 123440 2644300 1802600 2140200 1395700 1689300 1696300 1427000 1674500 3 3 1 3 3 3 3 3 3 3 3 615860 989510 0 1256600 1272900 1512000 860070 721050 808790 696280 801030 573380 924320 54385 1266900 1209800 1506800 892400 772290 824770 681040 772960 2 2 0 2 2 2 2 2 2 2 2 667140 1286600 15436 1367600 621040 565260 476740 924740 871350 756710 936670 621290 1200800 69051 1377400 592790 633410 503340 917040 871500 745960 901550 1 1 1 1 1 1 1 1 1 1 1 143920000 74006000 69913000 333 150 318 1758;1759 2172;2173;2174 2174 3 ACVLELEER Unmodified 1117.5438 0.54375887 2700 Q9BW19 KIFC1 Kinesin-like protein KIFC1 yes yes 0 0 0 0 By MS/MS 2 0 1 1 46.812 46.758 2 0.0022059 12978 20211116_3440_TMUAki_TMT10x_S_F2 88.177 62.238 1435500 2128400 0 2536400 1408400 1203900 1090500 1872700 1849000 1620700 1935000 1336500 1987500 115450 2538800 1342200 1323700 1146200 1862700 1850900 1593200 1863900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1435500 2128400 0 2536400 1408400 1203900 1090500 1872700 1849000 1620700 1935000 1336500 1987500 115450 2538800 1342200 1323700 1146200 1862700 1850900 1593200 1863900 1 1 0 1 1 1 1 1 1 1 1 86057000 0 86057000 334 2700 319 1760 2175 2175 1 ACYGVLR Unmodified 837.41671 0.41670786 783 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 0 By MS/MS By MS/MS 6 1 1 1 1 1 32.447 32.611 2 0.044525 8850 20211116_3435_TMUAki_TMT10x_P_F7 67.285 40.42 253940 412010 0 393730 246530 193450 263940 161210 163810 184720 291870 236420 384380 18231 399960 236640 208700 263710 166230 175580 179440 277590 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 253940 412010 0 393730 246530 193450 263940 161210 163810 184720 291870 236420 384380 18231 399960 236640 208700 263710 166230 175580 179440 277590 1 1 0 1 1 1 1 1 1 1 1 17267000 0 17267000 335 783 320 1761;1762 2176;2177 2176 2 ACYLSINPQKDETLETEK Unmodified 2138.0201 0.02014968 1298 P61163 ACTR1A Alpha-centractin yes yes 0 0 0 1 By MS/MS By MS/MS 6.25 0.433 3 1 2 2 55.029 55.117 3;4 4.7224E-31 15927 20211116_3445_TMUAki_TMT10x_S_F6 182.17 156.56 14481000 26430000 151180 30411000 21071000 24376000 15015000 18909000 17712000 17670000 20682000 13484000 24677000 1377800 30653000 20057000 25082000 15630000 19465000 18006000 17308000 19859000 4 4 3 4 4 4 4 4 4 4 4 6719800 12678000 145540 14133000 15075000 19149000 10975000 9784300 9085300 9157900 9633500 6257800 11835000 809770 14390000 14360000 18988000 11288000 10402000 9344900 8969900 9276200 2 2 2 2 2 2 2 2 2 2 2 7761300 13752000 5642.3 16278000 5995600 5227500 4040000 9125100 8626400 8511700 11049000 7226100 12841000 568000 16263000 5696400 6094700 4342200 9062800 8661100 8338200 10583000 2 2 1 2 2 2 2 2 2 2 2 2363800000 1461300000 902500000 336 1298 321 1763;1764;1765;1766 2178;2179;2180;2181;2182 2180 5 ADAASQVLLGSGLTILSQPLMYVK Acetyl (Protein N-term);Oxidation (M) 2532.3509 0.35092629 3346 Q9Y6C9 MTCH2 Mitochondrial carrier homolog 2 yes yes 1 0 1 0 By MS/MS By MS/MS 1.86 0.639 2 4 1 4 3 85.271 85.267 2;3;4 3.9931E-48 29863 20211116_3429_TMUAki_TMT10x_P_F2 95.57 66.229 1494600 2519700 15163 1971800 1496400 2833800 1710700 2163000 2231800 2234000 1988500 1391600 2349100 123960 2063100 1440200 2818700 1740200 2235200 2239000 2178900 1925800 7 7 3 7 7 7 7 7 7 7 7 1106900 1871100 4979.8 1495900 975910 2307800 1155500 1648000 1693700 1724800 1487100 1030600 1744600 80469 1564700 939650 2286200 1179400 1711200 1692100 1681400 1441000 5 5 1 5 5 5 5 5 5 5 5 387670 648570 10183 475890 520460 526020 555180 514990 538150 509180 501390 361040 604540 43491 498430 500530 532540 560800 523990 546920 497530 484810 2 2 2 2 2 2 2 2 2 2 2 1283000000 1092800000 190190000 337 3346 322 1767;1768;1769;1770;1771;1772;1773 2183;2184;2185;2186;2187;2188;2189 2186 3294 7 ADAASQVLLGSGLTILSQPLMYVK Acetyl (Protein N-term) 2516.356 0.35601167 3346 Q9Y6C9 MTCH2 Mitochondrial carrier homolog 2 yes yes 1 0 0 0 By MS/MS 2 0 1 1 85.606 85.605 3 1.9249E-23 30021 20211116_3429_TMUAki_TMT10x_P_F2 95.48 74.541 276370 448520 8663.1 388590 248160 395800 301190 176680 165360 208580 303300 257390 418290 30592 400770 239810 397850 298530 191650 179060 202390 288310 1 1 1 1 1 1 1 1 1 1 1 276370 448520 8663.1 388590 248160 395800 301190 176680 165360 208580 303300 257390 418290 30592 400770 239810 397850 298530 191650 179060 202390 288310 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35871000 35871000 0 338 3346 322 1774 2190 2190 1 ADAASSLTVDVTPPTAK Unmodified 1642.8414 0.84138068 2833 Q9H8Y8;Q9H8Y8-2;Q9H8Y8-3 GORASP2 Golgi reassembly-stacking protein 2 yes no 0 0 0 0 By MS/MS 5 0 1 1 56.437 56.63 3 0.017978 17333 20211116_3433_TMUAki_TMT10x_P_F5 46.892 34.014 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 339 2833 323 1775 2191 2191 1 ADAEVIILPK Acetyl (Protein N-term) 1109.6332 0.6332258 294 O60832;O60832-2 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 1 0 0 0 By MS/MS By MS/MS 3.25 0.829 1 1 2 2 2 76.138 76.045 2 6.2319E-05 24837 20211116_3440_TMUAki_TMT10x_S_F2 50.878 27.321 5175900 8556300 0 7691700 5996900 8082600 6488200 6027000 5709700 5963300 6746700 4818800 7980700 388350 7913700 5759100 8163700 6531400 6229700 5879500 5826700 6476200 2 2 0 2 2 2 2 2 2 2 2 3078800 4774200 0 4462000 3115500 5897700 3812600 3486400 3502400 3635600 4074300 2866500 4453700 237740 4595500 3003600 5865400 3821300 3670900 3597000 3544600 3912600 1 1 0 1 1 1 1 1 1 1 1 2097100 3782000 0 3229700 2881400 2185000 2675500 2540600 2207300 2327700 2672400 1952300 3527000 150610 3318200 2755500 2298300 2710200 2558800 2282500 2282200 2563600 1 1 0 1 1 1 1 1 1 1 1 532860000 333560000 199300000 340 294 324 1776;1777;1778;1779 2192;2193;2194;2195 2194 4 ADAFGDELFSVFEGDSTTAAGTK Acetyl (Protein N-term) 2377.0598 0.059765888 1010 P42285 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 1 0 0 0 By MS/MS By MS/MS 2.11 1.2 4 2 1 2 4 5 84.115 84.111 2;3 2.9316E-46 27981 20211116_3428_TMUAki_TMT10x_P_F1 122.33 100.13 9463400 15149000 26808 14055000 10968000 14746000 10915000 10742000 10223000 11271000 11409000 8811100 14131000 775150 14426000 10513000 14889000 11053000 11139000 10473000 10986000 10969000 10 10 4 10 10 10 10 10 10 10 10 4095500 6522300 21529 6247100 3960600 8185200 4382100 5226500 4385900 4874500 5290300 3813200 6084900 326570 6421500 3807500 8152500 4423000 5452700 4493900 4775200 5075300 5 5 3 5 5 5 5 5 5 5 5 5367900 8626300 5279 7808100 7007500 6560500 6533100 5515200 5837500 6396900 6119000 4997900 8046200 448570 8004600 6705900 6736900 6630100 5686700 5979100 6211300 5894100 5 5 1 5 5 5 5 5 5 5 5 1385000000 944640000 440320000 341 1010 325 1780;1781;1782;1783;1784;1785;1786;1787;1788 2196;2197;2198;2199;2200;2201;2202;2203;2204;2205;2206 2198 11 ADAFGDELFSVFEGDSTTAAGTKK Acetyl (Protein N-term) 2505.1547 0.15472891 1010 P42285 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 1 0 0 1 By MS/MS By MS/MS 2.73 1.21 2 3 3 2 1 7 4 81.121 81.104 3;4 1.2444E-37 29662 20211116_3441_TMUAki_TMT10x_S_F3 123.14 114.54 22184000 34164000 227380 32768000 21282000 31532000 25431000 16667000 18209000 18401000 24380000 20656000 31873000 1693400 33509000 20514000 31865000 25356000 17748000 19059000 17900000 23328000 9 9 3 9 9 9 9 9 9 9 9 14053000 20080000 117540 20267000 10158000 22425000 14394000 10599000 11081000 10924000 14624000 13085000 18737000 1099000 20695000 9845900 22446000 14277000 11383000 11544000 10655000 13998000 5 5 1 5 5 5 5 5 5 5 5 8131000 14084000 109840 12501000 11124000 9107100 11037000 6067700 7127500 7477900 9756100 7571300 13136000 594320 12814000 10669000 9418700 11079000 6364800 7515400 7245200 9330000 4 4 2 4 4 4 4 4 4 4 4 10190000000 7567100000 2623200000 342 1010 326 1789;1790;1791;1792;1793;1794;1795;1796;1797;1798;1799 2207;2208;2209;2210;2211;2212;2213;2214;2215 2214 9 ADAHEEDELRAAEEQR Unmodified 1867.8296 0.82964679 1912 Q567U6 CCDC93 Coiled-coil domain-containing protein 93 yes yes 0 0 0 1 By MS/MS By matching 1 0 2 1 1 32.999 33.004 4 0.006578 7216 20211116_3428_TMUAki_TMT10x_P_F1 58.98 38.027 194020 303010 4082.9 363970 539570 424580 221060 218180 247550 183120 241880 180680 282970 24730 367910 509610 424160 241700 231200 250480 180290 233510 1 1 1 1 1 1 1 1 1 1 1 194020 303010 4082.9 363970 539570 424580 221060 218180 247550 183120 241880 180680 282970 24730 367910 509610 424160 241700 231200 250480 180290 233510 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27918000 14023000 13895000 343 1912 327 1800;1801 2216 2216 1 ADALYPVVSAASICAK Unmodified 1634.8338 0.83379288 358 O75792 RNASEH2A Ribonuclease H2 subunit A yes yes 0 0 0 0 By MS/MS 8 0 1 1 70.218 70.299 3 0.00022731 22406 20211116_3436_TMUAki_TMT10x_P_F8 71.781 29.263 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 344 358 328 1802 2217 2217 1 ADANKAEVPGATGGDSPHLQPAEPPGEPR Acetyl (Protein N-term) 2906.3795 0.37947732 3065 Q9P2K5;Q9P2K5-2;Q9P2K5-4 MYEF2 Myelin expression factor 2 yes no 1 0 0 1 By MS/MS By MS/MS 2.67 0.745 3 2 1 1 5 43.714 43.595 3;4 1.3773E-52 14511 20211116_3441_TMUAki_TMT10x_S_F3 84.878 77.345 1315500 2419000 16998 2799700 1662600 2343300 1139100 4772700 5021900 3347600 3109100 1224900 2258600 111470 2822500 1580900 2469900 1303000 4687300 4871100 3328100 3058500 6 6 3 6 6 6 6 6 6 6 6 483440 809700 4113.7 965850 1123400 1734300 774540 866840 937890 760310 701580 450050 756120 38020 985790 1067700 1699900 808950 921930 938610 746950 684100 2 2 1 2 2 2 2 2 2 2 2 832080 1609300 12884 1833900 539200 608940 364600 3905900 4084000 2587300 2407600 774820 1502500 73454 1836700 513180 769990 494100 3765400 3932500 2581200 2374400 4 4 2 4 4 4 4 4 4 4 4 427090000 149300000 277790000 345 3065 329 1803;1804;1805;1806;1807;1808 2218;2219;2220;2221;2222;2223 2223 6 ADAPVALVVHMAPASVLVDSR Unmodified 2117.1303 0.13030925 2622 Q9BQ52;Q9BQ52-4;Q9BQ52-2 ELAC2 Zinc phosphodiesterase ELAC protein 2 yes no 0 0 0 0 By MS/MS 8 0 1 1 75.364 75.378 3 0.0046261 24506 20211116_3436_TMUAki_TMT10x_P_F8 52.541 32.152 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 346 2622 330 1809 2224 2224 1 ADARQEEDSYEIFICHANVIR Unmodified 2535.1812 0.1812352 2489 Q96HS1;Q96HS1-2 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 3.33 0.943 1 2 2 1 58.014 57.951 4 6.6989E-05 18846 20211116_3429_TMUAki_TMT10x_P_F2 73.688 60.84 16262000 28705000 32256 26279000 20511000 34271000 20793000 23598000 15800000 18969000 23765000 15140000 26776000 1233600 27100000 19662000 34180000 20922000 24393000 16575000 18717000 22679000 3 3 1 3 3 3 3 3 3 3 3 10838000 19117000 32256 16231000 13917000 28020000 14197000 16529000 10425000 12821000 15662000 10090000 17828000 782060 16938000 13341000 27559000 14270000 17274000 10957000 12674000 14946000 2 2 1 2 2 2 2 2 2 2 2 5423500 9587600 0 10049000 6593400 6251300 6595700 7068900 5375400 6148500 8103300 5049700 8947900 451540 10162000 6321200 6621000 6652400 7118300 5618700 6042900 7732500 1 1 0 1 1 1 1 1 1 1 1 1477200000 1093600000 383530000 347 2489 331 1810;1811;1812 2225;2226 2225 2 ADDADEFGYSR Unmodified 1244.4946 0.49456007 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 By MS/MS 1 0 1 1 38.609 38.609 2 6.3241E-08 9447 20211116_3428_TMUAki_TMT10x_P_F1 143.5 118.56 360410 493460 0 751620 2294000 1008400 523820 493160 617590 407130 634880 335560 461420 54720 752380 2155000 999910 626800 524840 624800 401170 611910 1 1 0 1 1 1 1 1 1 1 1 360410 493460 0 751620 2294000 1008400 523820 493160 617590 407130 634880 335560 461420 54720 752380 2155000 999910 626800 524840 624800 401170 611910 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 91322000 91322000 0 348 2048 332 1813 2227 2227 1 ADDGRPFPQVIK Unmodified 1341.7041 0.70409934 482 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 1 By MS/MS By MS/MS 5 1.41 2 2 2 2 2 5 5 45.005 45.159 3 3.9766E-15 11768 20211116_3445_TMUAki_TMT10x_S_F6 180.09 150.79 72645000 111570000 654520 156940000 169750000 133840000 84615000 106410000 110420000 85270000 110900000 67642000 104280000 7656800 156560000 160640000 137160000 91079000 108940000 111220000 84150000 106960000 13 13 7 13 13 13 13 13 13 13 13 42970000 63859000 470180 89656000 147820000 113860000 64996000 62136000 64954000 49919000 63574000 40011000 59684000 5245100 90004000 139670000 113340000 70258000 65420000 66033000 49257000 61370000 7 7 4 7 7 7 7 7 7 7 7 29675000 47711000 184340 67285000 21929000 19982000 19618000 44271000 45462000 35351000 47323000 27631000 44592000 2411700 66552000 20973000 23819000 20821000 43519000 45185000 34893000 45593000 6 6 3 6 6 6 6 6 6 6 6 23913000000 15297000000 8616200000 349 482 333 1814;1815;1816;1817;1818;1819;1820;1821;1822;1823 2228;2229;2230;2231;2232;2233;2234;2235;2236;2237;2238;2239;2240 2238 13 ADDIDIEAMLEAPYKKDENK Acetyl (Protein N-term);Oxidation (M) 2365.0995 0.099522213 1711 Q14498;Q14498-2;Q14498-3 RBM39 RNA-binding protein 39 yes no 1 0 1 2 By MS/MS By MS/MS 2.12 1.05 3 2 2 1 3 5 65.479 65.269 3;4 7.0533E-07 22395 20211116_3430_TMUAki_TMT10x_P_F3 50.425 36.797 20238000 35773000 261430 29015000 26934000 35812000 25514000 32078000 36678000 34582000 30011000 18845000 33354000 1914600 30179000 25799000 35980000 26300000 32878000 36588000 33671000 29157000 8 8 4 8 8 8 8 8 8 8 8 5582100 9676400 12168 7891700 6641200 15013000 7208500 8881600 11195000 10481000 7996700 5197500 9022500 479730 8283400 6382300 14718000 7405600 9387500 11101000 10171000 7813100 2 2 1 2 2 2 2 2 2 2 2 14656000 26096000 249260 21123000 20293000 20799000 18306000 23196000 25483000 24101000 22014000 13647000 24332000 1434900 21895000 19417000 21263000 18894000 23490000 25487000 23501000 21344000 6 6 3 6 6 6 6 6 6 6 6 3131900000 1617700000 1514300000 350 1711 335 1824;1825;1826;1827;1828;1829;1830;1831 2241;2242;2243;2244;2245;2246;2247;2248;2249 2242 2299 9 ADDLDFETGDAGASATFPMQCSALR Acetyl (Protein N-term) 2687.1479 0.14794574 1404 P63241;Q6IS14 EIF5A;EIF5AL1 Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like yes no 1 0 0 0 By MS/MS By MS/MS 2 1 1 1 1 1 79.424 79.399 2 3.743E-27 28959 20211116_3441_TMUAki_TMT10x_S_F3 115.31 104.26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 351 1404 336 1832;1833 2250;2251 2251 2 ADDLDFETGDAGASATFPMQCSALRK Acetyl (Protein N-term);Oxidation (M) 2831.2378 0.23782338 1404 P63241;Q6IS14 EIF5A;EIF5AL1 Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like yes no 1 0 1 1 By MS/MS By MS/MS 3.07 1.22 2 2 5 3 2 7 7 67.922 67.727 2;3 1.2104E-19 23330 20211116_3430_TMUAki_TMT10x_P_F3 69.261 63.621 19258000 33145000 139400 28781000 23265000 28355000 22034000 23387000 26797000 24997000 25164000 17930000 30911000 1468100 29664000 22266000 28801000 22562000 24077000 26995000 24347000 24325000 19 19 8 19 19 19 19 19 19 19 19 6851400 10793000 69061 9676000 6386400 13435000 8302800 8036000 8908500 8475400 8396200 6379500 10066000 553610 10006000 6172900 13333000 8340500 8456100 9018100 8259400 8115400 7 7 3 7 7 7 7 7 7 7 7 12406000 22352000 70335 19105000 16879000 14920000 13731000 15350000 17889000 16521000 16768000 11550000 20845000 914530 19657000 16094000 15467000 14221000 15621000 17977000 16087000 16210000 12 12 5 12 12 12 12 12 12 12 12 31632000000 14653000000 16978000000 352 1404 337 1834;1835;1836;1837;1838;1839;1840;1841;1842;1843;1844;1845;1846;1847 2252;2253;2254;2255;2256;2257;2258;2259;2260;2261;2262;2263;2264;2265;2266;2267;2268;2269;2270;2271 2257 1884 20 ADDLDFETGDAGASATFPMQCSALRK Acetyl (Protein N-term) 2815.2429 0.24290876 1404 P63241;Q6IS14 EIF5A;EIF5AL1 Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like yes no 1 0 0 1 By MS/MS By MS/MS 3.41 1.46 2 3 4 3 4 1 8 9 75.094 75.023 2;3 5.5128E-103 23768 20211116_3444_TMUAki_TMT10x_S_F5 209.41 196.29 122410000 203510000 506940 195190000 129260000 156390000 135930000 81741000 85080000 98865000 133360000 113970000 189870000 8612000 199130000 124050000 160030000 135960000 87389000 90493000 95852000 127150000 22 22 8 22 22 22 22 22 22 22 22 66294000 107720000 376490 101420000 58258000 105430000 77675000 46166000 46198000 53149000 73365000 61725000 100490000 4544100 103970000 56341000 105830000 76800000 50139000 49340000 51621000 69931000 11 11 4 11 11 11 11 11 11 11 11 56115000 95793000 130450 93767000 71002000 50953000 58253000 35575000 38883000 45716000 59994000 52242000 89378000 4067900 95160000 67708000 54203000 59155000 37250000 41153000 44231000 57220000 11 11 4 11 11 11 11 11 11 11 11 34493000000 18003000000 16490000000 353 1404 337 1848;1849;1850;1851;1852;1853;1854;1855;1856;1857;1858;1859;1860;1861;1862;1863;1864 2272;2273;2274;2275;2276;2277;2278;2279;2280;2281;2282;2283;2284;2285;2286;2287;2288;2289;2290;2291;2292;2293;2294 2293 23 ADDPLRLDQELQQPQTQEK Unmodified 2251.1081 0.10805348 1573 Q12888;Q12888-3;Q12888-2 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 0 1 By MS/MS 3.5 0.5 1 1 2 54.237 54.231 3 3.9112E-11 17787 20211116_3430_TMUAki_TMT10x_P_F3 123.14 103.3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 354 1573 338 1865;1866 2295;2296 2295 2 ADDPSSYMEVVQAANTSGNWEELVK Oxidation (M) 2755.2283 0.22830455 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 1 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 77.905 77.889 3 1.7666E-08 26233 20211116_3442_TMUAki_TMT10x_S_F4 98.74 90.553 4456900 7719700 36574 6221200 5335000 5786200 6175900 4251200 3478800 4513600 5762100 4150000 7197700 402020 6446000 5137900 5886900 6137000 4407700 3738100 4397400 5487800 3 3 2 3 3 3 3 3 3 3 3 1358000 2113400 20490 1831600 1058100 2204000 1511000 1322500 1066600 1462700 1588500 1264600 1971000 127480 1894000 1027200 2202600 1495300 1393300 1123100 1422700 1516200 1 1 1 1 1 1 1 1 1 1 1 3098900 5606300 16084 4389600 4276900 3582100 4664900 2928700 2412200 3050900 4173600 2885400 5226700 274540 4552000 4110700 3684400 4641800 3014300 2615100 2974700 3971600 2 2 1 2 2 2 2 2 2 2 2 1565800000 887460000 678310000 355 1471 339 1867;1868;1869 2297;2298;2299;2300 2299 1973 4 ADDTFEALCIEPFSSPPELPDVMKPQDSGSSANEQAVQ Unmodified 4105.8409 0.84087127 1794 Q15370 TCEB2 Transcription elongation factor B polypeptide 2 yes yes 0 0 0 1 By MS/MS 3 0 1 1 80.304 80.259 4 0.023918 29344 20211116_3441_TMUAki_TMT10x_S_F3 37.857 32.804 1340100 2265900 18767 2161000 1496300 1148800 2028000 522770 392350 579960 1455900 1247900 2113900 130780 2196800 1449200 1218700 1978600 564820 508460 564060 1371600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1340100 2265900 18767 2161000 1496300 1148800 2028000 522770 392350 579960 1455900 1247900 2113900 130780 2196800 1449200 1218700 1978600 564820 508460 564060 1371600 1 1 1 1 1 1 1 1 1 1 1 789800000 0 789800000 356 1794 340 1870 2301 2301 1 ADDVDQQQTTNTVEEPLDLIR Acetyl (Protein N-term) 2441.1558 0.15579154 1351 P62310 LSM3 U6 snRNA-associated Sm-like protein LSm3 yes yes 1 0 0 0 By MS/MS 1 0 1 1 78.18 78.18 2 1.1505E-23 25525 20211116_3428_TMUAki_TMT10x_P_F1 129.95 121.85 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 357 1351 341 1871 2302 2302 1 ADEASELACPTPK Unmodified 1387.6289 0.62894506 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS 3 0 1 1 42.157 42.212 3 0.0006063 12800 20211116_3430_TMUAki_TMT10x_P_F3 71.558 56.585 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 358 1092 342 1872 2303 2303 1 ADEASELACPTPKEDGLAQQQTQLNLR Unmodified 2982.4353 0.43527764 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 1 By MS/MS By MS/MS 3.75 0.433 1 3 2 2 55.436 55.417 3;4 1.0364E-51 17070 20211116_3442_TMUAki_TMT10x_S_F4 200.54 190.48 2175400 3816100 47479 3813800 2248600 2665200 1821200 2473900 2303500 2413800 2848400 2025800 3560800 225630 3873700 2148200 2781700 1884600 2523200 2341700 2359900 2730900 2 2 2 2 2 2 2 2 2 2 2 798490 1250900 1328.4 1379800 1022400 1519900 1029900 890940 903270 866120 1015200 743480 1167700 70575 1400600 980630 1525500 1040300 936840 928430 846920 975850 1 1 1 1 1 1 1 1 1 1 1 1376900 2565300 46151 2434000 1226100 1145400 791280 1583000 1400300 1547700 1833200 1282300 2393200 155050 2473100 1167500 1256100 844220 1586300 1413200 1513000 1755000 1 1 1 1 1 1 1 1 1 1 1 1868500000 1224000000 644460000 359 1092 343 1873;1874;1875;1876 2304;2305;2306 2305 3 ADEDPIMGFHQMFLLK Oxidation (M) 1906.8957 0.89574121 1328 P61970 NUTF2 Nuclear transport factor 2 yes yes 0 0 1 0 By MS/MS By MS/MS 6 0.577 1 4 1 2 4 75.204 75.185 3 2.6935E-05 24368 20211116_3434_TMUAki_TMT10x_P_F6 88.507 69.675 36362000 57082000 500030 65678000 33088000 35970000 40426000 20248000 17811000 23230000 37677000 33860000 53296000 3434800 65951000 31941000 38123000 39922000 21469000 19814000 22565000 35730000 5 5 5 5 5 5 5 5 5 5 5 10979000 17014000 203780 17747000 10650000 16676000 12016000 7058000 5855800 7813800 11248000 10224000 15878000 1095600 18037000 10259000 16838000 11926000 7684100 6418200 7600200 10684000 2 2 2 2 2 2 2 2 2 2 2 25383000 40069000 296250 47931000 22438000 19295000 28410000 13190000 11955000 15416000 26429000 23636000 37418000 2339300 47914000 21683000 21285000 27996000 13785000 13396000 14964000 25047000 3 3 3 3 3 3 3 3 3 3 3 2089600000 546220000 1543400000 360 1328 344 1877;1878;1879;1880;1881;1882 2307;2308;2309;2310;2311;2312;2313 2309 1776;1777 7 ADEDPIMGFHQMFLLK 2 Oxidation (M) 1922.8907 0.89065583 1328 P61970 NUTF2 Nuclear transport factor 2 yes yes 0 0 2 0 By MS/MS By MS/MS 5.86 0.99 1 1 3 2 3 4 65.288 65.465 3 0.00016041 19778 20211116_3434_TMUAki_TMT10x_P_F6 76.358 57.762 24774000 41810000 141310 36846000 27924000 43491000 30500000 43112000 43717000 43616000 38048000 23067000 38995000 2095200 38039000 26839000 43887000 31212000 43868000 43695000 42577000 36879000 7 7 2 7 7 7 7 7 7 7 7 6972000 11203000 0 10413000 7717500 16365000 8527000 11474000 11115000 11708000 10383000 6491200 10451000 535580 10768000 7416800 16195000 8687100 11920000 11168000 11425000 10039000 2 2 0 2 2 2 2 2 2 2 2 17801000 30607000 141310 26433000 20206000 27125000 21973000 31638000 32602000 31909000 27664000 16575000 28544000 1559600 27271000 19422000 27692000 22525000 31948000 32527000 31153000 26839000 5 5 2 5 5 5 5 5 5 5 5 3818900000 791520000 3027400000 361 1328 344 1883;1884;1885;1886;1887;1888;1889 2314;2315;2316;2317;2318;2319;2320;2321;2322 2315 1776;1777 9 ADEELEALRR Acetyl (Protein N-term) 1242.6204 0.62042929 127 O14737;O14737-2 PDCD5 Programmed cell death protein 5 yes no 1 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 44.374 44.269 2 5.3561E-10 11669 20211116_3428_TMUAki_TMT10x_P_F1 141.39 131.64 3167400 5105000 17070 6340400 4206200 3867900 3289000 4708200 4816700 3906400 4502000 2948800 4768100 240980 6344100 4007700 4111800 3431400 4720600 4822200 3848300 4352700 3 3 1 3 3 3 3 3 3 3 3 1048600 1676200 0 1995600 2256400 2295500 1621600 1450100 1441700 1025700 1285500 976140 1565200 80110 2017800 2146000 2301000 1672500 1504300 1469000 1019300 1244900 1 1 0 1 1 1 1 1 1 1 1 2118800 3428800 17070 4344800 1949800 1572500 1667400 3258100 3375100 2880700 3216500 1972700 3202800 160870 4326300 1861700 1810800 1758900 3216300 3353200 2829000 3107800 2 2 1 2 2 2 2 2 2 2 2 2212400000 1536400000 676000000 362 127 345 1890;1891 2323;2324;2325 2323 3 ADEGISFR Unmodified 893.4243 0.42429566 1533 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.69 2.37 1 2 3 1 2 2 2 8 5 37.789 37.921 2 0.00046252 10412 20211116_3430_TMUAki_TMT10x_P_F3 155.88 86.493 23433000 34235000 48035 39987000 54534000 36190000 25294000 22870000 24357000 21820000 31618000 21817000 31966000 2158700 40330000 51540000 36803000 27157000 23894000 25078000 21354000 30276000 18 18 7 18 18 18 18 18 18 18 18 17874000 25875000 16808 29923000 48736000 31344000 19156000 16716000 18100000 15987000 23787000 16641000 24159000 1690000 30261000 45973000 31515000 20945000 17712000 18662000 15644000 22771000 10 10 2 10 10 10 10 10 10 10 10 5559100 8359700 31227 10064000 5797500 4846400 6138200 6154700 6257200 5833200 7830400 5176100 7806900 468710 10069000 5567800 5288500 6212100 6182000 6416200 5710200 7505000 8 8 5 8 8 8 8 8 8 8 8 3857300000 2505500000 1351800000 363 1533 346 1892;1893;1894;1895;1896;1897;1898;1899;1900;1901;1902;1903;1904 2326;2327;2328;2329;2330;2331;2332;2333;2334;2335;2336;2337;2338;2339;2340;2341;2342;2343;2344 2331 19 ADEHVIDQGDDGDNFYVIER Unmodified 2306.0087 0.0087333705 660 P13861;P13861-2 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit yes no 0 0 0 0 By MS/MS 2 0 1 1 54.413 54.217 3 5.8115E-14 16070 20211116_3440_TMUAki_TMT10x_S_F2 139.81 122.31 726650 1446100 0 1546100 719650 766720 696460 1064500 985930 871720 1141400 676360 1349700 31821 1558500 687610 835850 716620 1061500 995870 859300 1096300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 726650 1446100 0 1546100 719650 766720 696460 1064500 985930 871720 1141400 676360 1349700 31821 1558500 687610 835850 716620 1061500 995870 859300 1096300 1 1 0 1 1 1 1 1 1 1 1 330050000 0 330050000 364 660 347 1905 2345 2345 1 ADFCIIHYAGK Unmodified 1293.6176 0.61759251 934;935 P35579;P35579-2;P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH9;MYH10 Myosin-9;Myosin-10 no no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 54.628 55.022 3 1.1085E-05 17333 20211116_3435_TMUAki_TMT10x_P_F7 104.79 81.046 9891100 18334000 179290 17255000 16765000 19381000 12979000 21532000 17551000 18437000 17591000 9210900 17104000 1083400 17711000 15990000 19661000 13505000 21691000 17656000 18134000 16968000 3 3 3 3 3 3 3 3 3 3 3 3061100 5382200 41.777 5246100 9307500 11875000 6017200 7381600 5975700 6523500 5595100 2850200 5021700 341310 5460700 8841800 11588000 6274300 7706200 6067600 6406500 5409100 1 1 1 1 1 1 1 1 1 1 1 6830000 12952000 179250 12009000 7457100 7505700 6961800 14150000 11575000 11914000 11996000 6360700 12082000 742090 12251000 7148700 8073400 7230400 13985000 11589000 11728000 11559000 2 2 2 2 2 2 2 2 2 2 2 1571700000 646670000 925050000 365 934;935 348 1906;1907;1908;1909 2346;2347;2348;2349 2346 4 ADFDDRVSDEEK Acetyl (Protein N-term) 1466.6161 0.61613177 1192 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 1 0 0 1 By MS/MS By MS/MS 1 0 4 2 2 42.114 42.054 2;3 1.2604E-09 10772 20211116_3428_TMUAki_TMT10x_P_F1 117.83 102.22 4296500 5903000 28748 10609000 17525000 10931000 6080000 8409800 10350000 5291200 8405300 4000200 5525700 512090 10496000 16514000 11060000 6897800 8584400 10273000 5296100 8168500 6 6 3 6 6 6 6 6 6 6 6 3161700 4379800 28509 7314000 16814000 10355000 5345200 6699800 7580800 4213400 5979500 2943700 4097800 437700 7299700 15833000 10279000 6090800 6922000 7557600 4217500 5817800 4 4 2 4 4 4 4 4 4 4 4 1134800 1523200 239.42 3295300 710640 576080 734770 1710000 2769100 1077800 2425800 1056500 1427900 74389 3195900 681110 780080 807020 1662500 2715900 1078700 2350700 2 2 1 2 2 2 2 2 2 2 2 616500000 507150000 109350000 366 1192 349 1910;1911;1912;1913 2350;2351;2352;2353;2354;2355;2356 2350 7 ADFDDRVSDEEKVR Acetyl (Protein N-term) 1721.7857 0.78565671 1192 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 1 0 0 2 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 38.877 38.871 3 1.7243E-29 9605 20211116_3428_TMUAki_TMT10x_P_F1 173.59 165.87 1022600 1995600 36142 2170000 4009500 5146000 2242300 9010000 7175000 4273400 3740200 952370 1862700 157230 2245900 3802100 5145700 2519500 8824000 6961600 4368700 3714400 4 4 3 4 4 4 4 4 4 4 4 483970 908130 16216 935010 3328000 4407600 1633700 5407700 4215300 2426900 2235200 450720 847480 92005 1003900 3149300 4298500 1825700 5358500 4105100 2493000 2217500 2 2 1 2 2 2 2 2 2 2 2 538610 1087500 19926 1235000 681460 738410 608550 3602300 2959700 1846500 1505100 501650 1015300 65226 1242000 652790 847230 693880 3465500 2856500 1875700 1496900 2 2 2 2 2 2 2 2 2 2 2 313840000 194020000 119810000 367 1192 350 1914;1915;1916 2357;2358;2359;2360 2357 4 ADFDTYDDR Acetyl (Protein N-term) 1158.4465 0.44654725 1765 Q15056-2;Q15056 EIF4H Eukaryotic translation initiation factor 4H yes no 1 0 0 0 By MS/MS 1 0 1 1 47.738 47.496 2 0.0026583 15068 20211116_3439_TMUAki_TMT10x_S_F1 66.546 56.959 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 368 1765 351 1917 2361 2361 1 ADFDTYDDRAYSSFGGGR Acetyl (Protein N-term) 2040.845 0.84496251 1765 Q15056-2;Q15056 EIF4H Eukaryotic translation initiation factor 4H yes no 1 0 0 1 By MS/MS By MS/MS 1 0 3 2 1 59.27 59.121 2 1.7583E-50 19796 20211116_3439_TMUAki_TMT10x_S_F1 189.33 175.56 419050 762090 0 874690 407130 438770 493870 678210 635680 571910 707970 390170 711530 33687 877860 392490 479260 500800 674290 643060 562940 680710 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 419050 762090 0 874690 407130 438770 493870 678210 635680 571910 707970 390170 711530 33687 877860 392490 479260 500800 674290 643060 562940 680710 1 1 0 1 1 1 1 1 1 1 1 348050000 193700000 154360000 369 1765 352 1918;1919;1920 2362;2363 2363 2 ADFPAGIPECGTDALR Unmodified 1688.7828 0.78281994 820 P26640 VARS Valine--tRNA ligase yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.667 4 4 1 4 5 60.016 59.961 2;3 3.2945E-35 18508 20211116_3431_TMUAki_TMT10x_P_F4 205.31 178.2 17364000 28730000 202520 29178000 23292000 34835000 22352000 19789000 17984000 19096000 21484000 16168000 26810000 1626400 29819000 22316000 34800000 22587000 20859000 18611000 18679000 20616000 8 8 6 8 8 8 8 8 8 8 8 16403000 27033000 197120 27478000 22250000 33972000 21448000 18559000 16909000 17933000 20182000 15273000 25226000 1540500 28097000 21320000 33862000 21657000 19629000 17517000 17541000 19367000 7 7 5 7 7 7 7 7 7 7 7 961160 1697500 5399.9 1700200 1041900 862220 904080 1229800 1074800 1162500 1302100 894980 1583900 85850 1721800 995860 938320 929530 1229800 1094000 1138200 1249100 1 1 1 1 1 1 1 1 1 1 1 3939600000 2515100000 1424500000 370 820 353 1921;1922;1923;1924;1925;1926;1927;1928;1929 2364;2365;2366;2367;2368;2369;2370;2371;2372;2373 2369 10 ADFQGISPER Unmodified 1118.5356 0.53563702 1320 P61803 DAD1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 41.169 41.038 2 0.00010073 12070 20211116_3430_TMUAki_TMT10x_P_F3 123.11 93.962 1121300 1757400 29282 2390200 1664900 1323400 1143500 1461600 1627700 1162700 1878900 1044200 1642200 127860 2377800 1585000 1417100 1202200 1470200 1643600 1147900 1804700 2 2 2 2 2 2 2 2 2 2 2 270860 411960 4076.3 527930 935080 617130 372720 314140 386640 263020 403300 252220 384830 35558 531720 882710 616380 407900 333150 393320 258980 388530 1 1 1 1 1 1 1 1 1 1 1 850410 1345500 25205 1862300 729790 706310 770810 1147500 1241100 899720 1475600 792010 1257400 92306 1846100 702310 800760 794280 1137000 1250300 888930 1416200 1 1 1 1 1 1 1 1 1 1 1 98184000 53061000 45124000 371 1320 354 1930;1931 2374;2375 2374 2 ADFREPNAEVPRPIPHIGPDYIPTEEER Unmodified 3243.5949 0.59488982 2998 Q9NX40;Q9NX40-3;Q9NX40-2;Q9NX40-4 OCIAD1 OCIA domain-containing protein 1 yes no 0 0 0 2 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 53.8 53.88 5 3.9055E-25 15069 20211116_3444_TMUAki_TMT10x_S_F5 156.27 139.47 13226000 22610000 106460 20542000 18778000 26768000 16652000 18017000 16793000 15756000 19126000 12315000 21089000 1166300 21196000 17951000 26689000 17007000 18693000 17161000 15481000 18378000 5 5 2 5 5 5 5 5 5 5 5 10967000 18595000 80371 16940000 16155000 24466000 14599000 14922000 13459000 12818000 15880000 10211000 17345000 949600 17511000 15449000 24246000 14855000 15590000 13828000 12606000 15244000 4 4 1 4 4 4 4 4 4 4 4 2259400 4014400 26088 3602500 2623600 2302100 2053000 3095100 3334000 2937300 3246400 2104000 3744300 216740 3684800 2502900 2443300 2151900 3102100 3332600 2875200 3134400 1 1 1 1 1 1 1 1 1 1 1 6905500000 4964600000 1940900000 372 2998 355 1932;1933;1934;1935;1936 2376;2377;2378;2379;2380 2380 5 ADGELNVDSLITR Acetyl (Protein N-term) 1443.7205 0.72053726 1334 P62140 PPP1CB Serine/threonine-protein phosphatase PP1-beta catalytic subunit yes yes 1 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 74.778 74.702 2 5.417E-19 25604 20211116_3429_TMUAki_TMT10x_P_F2 129.88 117.25 8039200 13151000 252040 11712000 9560100 13003000 9832300 10272000 9456000 9922400 10977000 7487100 12266000 922700 12069000 9188800 13105000 9947500 10571000 9690300 9705100 10542000 4 4 4 4 4 4 4 4 4 4 4 4156400 6586200 147200 5730500 4279900 8307100 5376100 5260600 4939100 4850300 5321200 3871100 6142400 483510 5945000 4140200 8235300 5382400 5490100 5057400 4753900 5121300 2 2 2 2 2 2 2 2 2 2 2 3882800 6565000 104840 5981200 5280200 4695400 4456200 5011300 4516900 5072100 5656100 3616000 6123600 439190 6123800 5048600 4869800 4565100 5081100 4632900 4951200 5421000 2 2 2 2 2 2 2 2 2 2 2 1233700000 812970000 420740000 373 1334 356 1937;1938;1939;1940 2381;2382;2383;2384 2382 4 ADGILVPGGFGIR Unmodified 1270.7034 0.70337105 2926 Q9NRF8 CTPS2 CTP synthase 2 yes yes 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 68.883 68.984 2 0.0019952 23140 20211116_3435_TMUAki_TMT10x_P_F7 69.276 37.341 9595700 15799000 237180 13370000 11082000 21253000 12094000 15733000 14144000 14492000 13908000 8935200 14733000 900410 13930000 10656000 21041000 12278000 16237000 14291000 14205000 13424000 2 2 1 2 2 2 2 2 2 2 2 9595700 15799000 237180 13370000 11082000 21253000 12094000 15733000 14144000 14492000 13908000 8935200 14733000 900410 13930000 10656000 21041000 12278000 16237000 14291000 14205000 13424000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 908290000 908290000 0 374 2926 357 1941;1942 2385;2386;2387 2385 3 ADGIVSK Unmodified 688.37555 0.37555455 1403 P63220 RPS21 40S ribosomal protein S21 yes yes 0 0 0 0 By MS/MS By MS/MS 4.4 0.8 1 1 3 3 2 35.703 35.684 2 0.031495 9052 20211116_3433_TMUAki_TMT10x_P_F5 75.109 2.8757 2917600 4894200 28424 4324800 3667700 4926200 3233300 3100500 3161800 2926400 3762500 2716800 4564600 272620 4461200 3507100 4940400 3300200 3239300 3241000 2865200 3611000 2 2 1 2 2 2 2 2 2 2 2 2226000 3722800 0 3159500 2957700 4154100 2477200 2126700 2162300 2061100 2709600 2072600 3471700 188530 3277800 2823500 4125000 2528100 2262600 2232900 2015700 2596900 1 1 0 1 1 1 1 1 1 1 1 691580 1171300 28424 1165300 709970 772170 756160 973850 999520 865250 1052900 644140 1092900 84084 1183400 683630 815420 772130 976720 1008100 849520 1014100 1 1 1 1 1 1 1 1 1 1 1 96957000 71441000 25516000 375 1403 358 1943;1944;1945;1946;1947 2388;2389;2390 2389 3 ADGQVAELLLR Acetyl (Protein N-term) 1225.6667 0.6666512 3231 Q9Y285;Q9Y285-2 FARSA Phenylalanine--tRNA ligase alpha subunit yes no 1 0 0 0 By MS/MS By MS/MS 2.4 1.2 2 2 1 2 3 78.638 78.591 2 3.6598E-16 25704 20211116_3428_TMUAki_TMT10x_P_F1 151.97 134.88 5165700 8105200 145910 8242900 5313000 5917600 6329000 4644700 4484600 4826700 6134600 4810900 7563500 566320 8364700 5128800 6143200 6309500 4792100 4701600 4706500 5866700 3 3 3 3 3 3 3 3 3 3 3 1147800 1689300 44720 1574200 1075900 1894000 1316500 1105300 1109400 1008300 1336300 1069100 1575900 135830 1618800 1040400 1892100 1316400 1160700 1145700 988800 1282100 1 1 1 1 1 1 1 1 1 1 1 4017900 6415900 101190 6668800 4237100 4023500 5012400 3539400 3375300 3818300 4798200 3741800 5987600 430480 6745800 4088400 4251200 4993100 3631400 3555900 3717700 4584600 2 2 2 2 2 2 2 2 2 2 2 1618100000 618140000 999930000 376 3231 359 1948;1949;1950;1951;1952 2391;2392;2393 2391 3 ADGYEPPVQESV Unmodified 1289.5776 0.57756142 1305 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.894 2 1 2 2 3 51.384 51.207 2 1.5577E-05 16543 20211116_3439_TMUAki_TMT10x_S_F1 103.55 92.673 7719500 13273000 110080 16624000 13311000 12667000 8076900 12821000 15361000 10117000 13542000 7188200 12397000 682760 16663000 12636000 13152000 8691900 12947000 15244000 9991900 13120000 7 7 5 7 7 7 7 7 7 7 7 3220400 5210100 69752 6402300 9358500 8746000 4744100 5006700 6106200 3978100 5386600 2999000 4866100 417970 6482300 8861600 8681300 5095600 5248400 6126800 3927600 5218500 3 3 3 3 3 3 3 3 3 3 3 4499100 8062600 40332 10221000 3952200 3921300 3332800 7814200 9255200 6138600 8155500 4189200 7531400 264790 10181000 3774500 4470800 3596400 7698300 9117400 6064300 7901300 4 4 2 4 4 4 4 4 4 4 4 1752000000 1075200000 676810000 377 1305 360 1953;1954;1955;1956;1957 2394;2395;2396;2397;2398;2399;2400 2398 7 ADGYVLEGK Unmodified 950.47091 0.4709115 1338 P62241 RPS8 40S ribosomal protein S8 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 45.87 45.802 2 0.00040901 14237 20211116_3430_TMUAki_TMT10x_P_F3 89.08 52.523 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 378 1338 361 1958;1959;1960 2401;2402;2403 2401 3 ADHDFVVQEDFMK Oxidation (M) 1595.6926 0.69260795 1357 P62333 PSMC6 26S protease regulatory subunit 10B yes yes 0 0 1 0 By MS/MS By MS/MS 2.78 1.31 2 2 2 2 1 4 5 49.479 49.404 3 0.00069421 16834 20211116_3441_TMUAki_TMT10x_S_F3 77.204 62.858 15947000 26164000 106700 27519000 23659000 27216000 18020000 24541000 24752000 21750000 24860000 14849000 24418000 1466700 27973000 22546000 27684000 18782000 25003000 24891000 21357000 23978000 8 8 4 8 8 8 8 8 8 8 8 8704700 13725000 47428 13767000 16767000 20798000 12144000 13936000 14134000 12024000 13628000 8105000 12807000 846280 14147000 15961000 20599000 12622000 14458000 14274000 11822000 13162000 4 4 2 4 4 4 4 4 4 4 4 7242300 12439000 59273 13752000 6892500 6418100 5875700 10605000 10618000 9725500 11232000 6743500 11611000 620450 13826000 6584900 7084800 6159900 10545000 10616000 9534700 10816000 4 4 2 4 4 4 4 4 4 4 4 3423700000 1859400000 1564300000 379 1357 362 1961;1962;1963;1964;1965;1966;1967;1968;1969 2404;2405;2406;2407;2408;2409;2410;2411;2412 2411 1816 9 ADHDFVVQEDFMK Unmodified 1579.6977 0.69769333 1357 P62333 PSMC6 26S protease regulatory subunit 10B yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 56.347 56.216 3 3.1955E-06 17353 20211116_3442_TMUAki_TMT10x_S_F4 101.32 83.403 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 380 1357 362 1970;1971 2413;2414 2414 2 ADHGEPIGR Unmodified 950.45699 0.45699277 553 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 0 By MS/MS 3 0 2 2 25.342 25.042 2;3 0.00043323 7121 20211116_3441_TMUAki_TMT10x_S_F3 101.65 81.86 166910 314930 3342 232830 189410 212250 241650 174170 153790 165240 197040 155420 293550 12360 243020 183030 216640 239660 178740 161830 161750 188740 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 166910 314930 3342 232830 189410 212250 241650 174170 153790 165240 197040 155420 293550 12360 243020 183030 216640 239660 178740 161830 161750 188740 3 3 1 3 3 3 3 3 3 3 3 20257000 0 20257000 381 553 363 1972;1973 2415;2416;2417 2415 3 ADHQPLTEASYVNLPTIALCNTDSPLR Unmodified 2995.4709 0.47093486 565 P08865 RPSA 40S ribosomal protein SA yes yes 0 0 0 0 By MS/MS By MS/MS 6 1.38 4 4 5 4 4 10 11 72.791 72.806 2;3;4 8.1206E-93 23172 20211116_3445_TMUAki_TMT10x_S_F6 273.33 259.92 67781000 112020000 930720 108200000 74750000 103110000 83281000 64769000 60701000 67484000 83608000 63116000 104510000 4949900 110570000 71923000 104500000 83330000 67869000 63554000 65797000 79945000 41 41 21 41 41 41 41 41 41 41 41 39421000 64144000 686040 61662000 37918000 72261000 47913000 34844000 34316000 38028000 48322000 36709000 59844000 3183300 63239000 36643000 72120000 47657000 37410000 36003000 37009000 46181000 20 20 12 20 20 20 20 20 20 20 20 28360000 47877000 244680 46534000 36832000 30851000 35368000 29925000 26385000 29456000 35287000 26406000 44669000 1766700 47333000 35280000 32375000 35673000 30459000 27551000 28788000 33764000 21 21 9 21 21 21 21 21 21 21 21 86527000000 41798000000 44729000000 382 565 364 1974;1975;1976;1977;1978;1979;1980;1981;1982;1983;1984;1985;1986;1987;1988;1989;1990;1991;1992;1993;1994 2418;2419;2420;2421;2422;2423;2424;2425;2426;2427;2428;2429;2430;2431;2432;2433;2434;2435;2436;2437;2438;2439;2440;2441;2442;2443;2444;2445;2446;2447;2448;2449;2450;2451;2452;2453;2454;2455;2456;2457;2458 2451 41 ADHSFSDGVPSDSVEAAK Acetyl (Protein N-term) 1859.8174 0.81735077 2602 Q99733;Q99733-2 NAP1L4 Nucleosome assembly protein 1-like 4 no no 1 0 0 0 By matching 3 0 1 1 46.953 46.608 3 1 NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 70783000 0 70783000 383 2602 365 1995 0 ADIDNKEQSELDQDLDDVEEVEEEETGEETK Acetyl (Protein N-term) 3621.5337 0.53370968 1240 P55209;P55209-2 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 1 0 0 1 By matching By MS/MS 1 0 2 1 1 79.458 79.44 3 4.4045E-15 28025 20211116_3439_TMUAki_TMT10x_S_F1 68.934 58.418 1741500 3172600 0 2913700 2061800 1725200 2300100 833090 1039600 1059500 1859500 1621500 2959400 140670 2972900 1982400 1810800 2281600 898830 1141900 1025400 1768400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1741500 3172600 0 2913700 2061800 1725200 2300100 833090 1039600 1059500 1859500 1621500 2959400 140670 2972900 1982400 1810800 2281600 898830 1141900 1025400 1768400 1 1 0 1 1 1 1 1 1 1 1 3608000000 1592500000 2015500000 384 1240 366 1996;1997 2459 2459 1 ADIEVACYGYEGIDAVK Unmodified 1871.8611 0.86112984 504 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 70.047 69.843 3 6.4784E-06 24194 20211116_3430_TMUAki_TMT10x_P_F3 96.666 86.181 9583800 16595000 149750 15551000 11781000 15301000 11467000 11756000 10153000 12220000 13344000 8924300 15481000 939940 15935000 11296000 15523000 11607000 12145000 10500000 11916000 12773000 4 4 3 4 4 4 4 4 4 4 4 4505000 7589900 67067 7108800 4886100 9862500 5818700 5657600 4908700 5689600 6025300 4194900 7080400 416370 7327300 4710900 9782900 5825300 5965400 5073200 5555500 5777900 2 2 1 2 2 2 2 2 2 2 2 5078800 9004700 82685 8442500 6895200 5438400 5647800 6098300 5244300 6530700 7318200 4729500 8400200 523560 8607600 6585100 5740400 5781500 6180000 5426400 6360400 6995400 2 2 2 2 2 2 2 2 2 2 2 1758100000 808500000 949620000 385 504 368 1998;1999;2000;2001 2460;2461;2462;2463 2460 4 ADIFMFDEPSSYLDVK Oxidation (M) 1891.855 0.85498183 1303 P61221 ABCE1 ATP-binding cassette sub-family E member 1 yes yes 0 0 1 0 By MS/MS By MS/MS 4.78 1.13 2 1 3 3 5 4 78.856 78.845 2;3 2.657E-06 25287 20211116_3434_TMUAki_TMT10x_P_F6 87.932 70.015 15999000 26468000 4605.4 24903000 20245000 21759000 20727000 16238000 16082000 18868000 19516000 14894000 24692000 1043300 25469000 19402000 22236000 20856000 16867000 16686000 18319000 18720000 5 5 1 5 5 5 5 5 5 5 5 4668600 7089000 4605.4 7062700 4388600 8951800 5218700 4777100 4961000 5682800 5781500 4346700 6614700 363100 7235200 4227600 8909200 5242200 5094800 5087300 5512800 5551800 2 2 1 2 2 2 2 2 2 2 2 11330000 19379000 0 17841000 15856000 12807000 15509000 11461000 11121000 13185000 13734000 10547000 18077000 680150 18234000 15174000 13327000 15613000 11772000 11598000 12806000 13168000 3 3 0 3 3 3 3 3 3 3 3 3520000000 1087100000 2432900000 386 1303 369 2002;2003;2004;2005;2006;2007;2008;2009;2010 2464;2465;2466;2467;2468;2469;2470;2471 2468 1757 8 ADIFVDPVLHTACALDIK Unmodified 1997.0292 0.029198224 2375 Q92896;Q92896-2;Q92896-3 GLG1 Golgi apparatus protein 1 yes no 0 0 0 0 By MS/MS By matching 7 0 2 1 1 78.446 78.495 3 7.0451E-06 27212 20211116_3435_TMUAki_TMT10x_P_F7 85.636 69.513 5157200 8065800 0 7928000 5419000 9584600 6493400 4453000 4886500 4892600 6617500 4801500 7525800 380990 8122400 5219700 9546600 6480600 4799600 5102900 4760200 6330100 1 1 0 1 1 1 1 1 1 1 1 5157200 8065800 0 7928000 5419000 9584600 6493400 4453000 4886500 4892600 6617500 4801500 7525800 380990 8122400 5219700 9546600 6480600 4799600 5102900 4760200 6330100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2043000000 1045500000 997510000 387 2375 370 2011;2012 2472 2472 1 ADISLDELIRK Acetyl (Protein N-term) 1313.7191 0.7190807 2725 Q9BY77;Q9BY77-2 POLDIP3 Polymerase delta-interacting protein 3 yes no 1 0 0 1 By MS/MS 2.5 0.5 1 1 2 75.185 75.046 2 9.3291E-08 26233 20211116_3430_TMUAki_TMT10x_P_F3 102.62 81.997 2651400 4025500 3165.4 4232100 2807200 4427300 2764400 2492500 2551200 2529000 3248100 2468800 3757000 224950 4305800 2690800 4454700 2799700 2632900 2629400 2468500 3111800 1 1 1 1 1 1 1 1 1 1 1 2651400 4025500 3165.4 4232100 2807200 4427300 2764400 2492500 2551200 2529000 3248100 2468800 3757000 224950 4305800 2690800 4454700 2799700 2632900 2629400 2468500 3111800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 318190000 318190000 0 388 2725 371 2013;2014 2473;2474 2474 2 ADKDYHFKVDNDENEHQLSLR Unmodified 2572.1942 0.19424273 524 P06748;P06748-3;P06748-2 NPM1 Nucleophosmin yes no 0 0 0 2 By MS/MS By MS/MS 5.16 0.987 1 4 6 7 1 13 6 35.614 35.658 4;5;6 8.7996E-83 8831 20211116_3434_TMUAki_TMT10x_P_F6 287.14 270.65 78381000 133900000 827310 122190000 203890000 234720000 115700000 245780000 223410000 194060000 153280000 72974000 124900000 7237300 127170000 193240000 232420000 125310000 247790000 220080000 191660000 150030000 35 35 15 35 35 35 35 35 35 35 35 33394000 60948000 189270 46755000 155300000 192530000 79177000 144250000 127340000 109610000 74595000 31085000 56818000 3365800 50880000 146930000 186060000 85784000 148060000 125570000 108480000 73592000 23 23 10 23 23 23 23 23 23 23 23 44987000 72953000 638050 75437000 48595000 42194000 36525000 101530000 96067000 84453000 78682000 41889000 68082000 3871500 76285000 46309000 46368000 39523000 99726000 94509000 83185000 76440000 12 12 5 12 12 12 12 12 12 12 12 33835000000 24124000000 9711100000 389 524 372 2015;2016;2017;2018;2019;2020;2021;2022;2023;2024;2025;2026;2027;2028;2029;2030;2031;2032;2033 2475;2476;2477;2478;2479;2480;2481;2482;2483;2484;2485;2486;2487;2488;2489;2490;2491;2492;2493;2494;2495;2496;2497;2498;2499;2500;2501;2502;2503;2504;2505;2506;2507;2508;2509 2497 35 ADKEAAFDDAVEER Acetyl (Protein N-term) 1606.7111 0.71109479 1553 Q09028;Q09028-3 RBBP4 Histone-binding protein RBBP4 yes no 1 0 0 1 By MS/MS By MS/MS 1.5 0.5 4 4 4 4 52.706 52.561 2;3 2.5207E-37 17046 20211116_3439_TMUAki_TMT10x_S_F1 152.64 90.859 8697700 18482000 100180 12915000 21182000 35098000 17303000 35027000 30212000 24753000 21799000 8098300 17225000 880230 13900000 20212000 34385000 18153000 35309000 29873000 24599000 21289000 4 4 2 4 4 4 4 4 4 4 4 5699100 12023000 91164 7702300 17555000 30948000 14700000 24508000 20983000 17253000 14817000 5306200 11203000 620720 8510400 16760000 29949000 15255000 25026000 20853000 17149000 14485000 2 2 1 2 2 2 2 2 2 2 2 2998600 6459000 9012 5212500 3627000 4150000 2602600 10519000 9229700 7500400 6982000 2792000 6022300 259510 5389800 3452100 4436400 2898600 10283000 9019900 7449700 6804900 2 2 1 2 2 2 2 2 2 2 2 7491500000 4726300000 2765200000 390 1553 373 2034;2035;2036;2037;2038;2039;2040;2041 2510;2511;2512;2513;2514;2515;2516;2517 2514 8 ADKMDMSLDDIIK Acetyl (Protein N-term);2 Oxidation (M) 1567.711 0.71096013 2113 Q86V81 ALYREF THO complex subunit 4 yes yes 1 0 2 1 By MS/MS By MS/MS 2.5 0.957 1 2 2 1 3 3 59.656 59.442 2;3 0.0012484 19882 20211116_3430_TMUAki_TMT10x_P_F3 52.79 35.354 9088200 15579000 16736 14505000 12801000 22332000 10911000 24187000 30247000 19551000 16978000 8461500 14533000 742050 14990000 12222000 22309000 11765000 24359000 29454000 19286000 16789000 6 6 2 6 6 6 6 6 6 6 6 5215700 8640000 0 8292200 9285500 18075000 7936900 12188000 15375000 10132000 9097000 4855900 8060700 434700 8630200 8865900 17678000 8351500 12627000 15094000 9980000 8969900 3 3 0 3 3 3 3 3 3 3 3 3872500 6938900 16736 6212400 3515100 4257200 2973800 11999000 14872000 9419600 7881300 3605600 6472000 307350 6359700 3356300 4631500 3413100 11732000 14361000 9305900 7819200 3 3 2 3 3 3 3 3 3 3 3 2224900000 1216100000 1008800000 391 2113 374 2042;2043;2044;2045;2046;2047 2518;2519;2520;2521;2522;2523 2520 2593;2594 6 ADKMDMSLDDIIK Acetyl (Protein N-term);Oxidation (M) 1551.716 0.71604551 2113 Q86V81 ALYREF THO complex subunit 4 yes yes 1 0 1 1 By MS/MS By MS/MS 3.6 1.02 1 1 2 1 3 2 69.083 69.011 2;3 0.00067903 24121 20211116_3429_TMUAki_TMT10x_P_F2 45.973 22.368 9913100 15886000 51798 15574000 12315000 15074000 12411000 7769400 6989200 8858400 12109000 9230500 14822000 900030 15903000 11813000 15223000 12417000 8300600 7529300 8606800 11523000 3 3 2 3 3 3 3 3 3 3 3 6418700 10046000 7849.2 9594300 8493400 12197000 9141600 4978000 4397300 5541700 7507400 5976400 9372800 564770 9858600 8160400 12103000 9092000 5442500 4791500 5389100 7145900 2 2 1 2 2 2 2 2 2 2 2 3494500 5839500 43949 5979800 3821200 2876300 3269800 2791300 2591900 3316800 4602000 3254000 5449400 335250 6044000 3652700 3119700 3324500 2858100 2737800 3217700 4377100 1 1 1 1 1 1 1 1 1 1 1 1277100000 648500000 628600000 392 2113 374 2048;2049;2050;2051;2052 2524;2525;2526;2527 2524 2593;2594 4 ADKMDMSLDDIIK Acetyl (Protein N-term) 1535.7211 0.72113089 2113 Q86V81 ALYREF THO complex subunit 4 yes yes 1 0 0 1 By matching By MS/MS 3 1 1 1 1 1 77.293 77.236 2 1 NaN NaN 11502000 20691000 528380 21847000 15033000 11305000 14752000 5772900 5719700 7225000 13239000 10713000 19311000 1495500 22048000 14439000 12042000 14698000 6192100 6480900 6996500 12538000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11502000 20691000 528380 21847000 15033000 11305000 14752000 5772900 5719700 7225000 13239000 10713000 19311000 1495500 22048000 14439000 12042000 14698000 6192100 6480900 6996500 12538000 1 1 1 1 1 1 1 1 1 1 1 1037400000 330640000 706740000 393 2113 374 2053;2054 0 ADKPDMGEIASFDK Acetyl (Protein N-term);Oxidation (M) 1580.7028 0.70283829 1409 P63313 TMSB10 Thymosin beta-10 yes yes 1 0 1 1 By MS/MS By MS/MS 3.08 1.38 2 3 3 2 3 5 8 52.577 52.479 2;3 1.0378E-06 18082 20211116_3441_TMUAki_TMT10x_S_F3 81.799 66.533 51805000 81527000 554420 113820000 103700000 110940000 55587000 89680000 115920000 65848000 84788000 48236000 76194000 5150500 113790000 98231000 112720000 60767000 91540000 114180000 65293000 82755000 12 12 6 12 12 12 12 12 12 12 12 32377000 47475000 284500 66186000 88508000 96811000 42404000 50945000 65820000 38366000 49417000 30147000 44369000 3452400 66657000 83705000 95704000 46147000 53735000 65354000 37989000 48179000 6 6 3 6 6 6 6 6 6 6 6 19427000 34052000 269920 47633000 15191000 14130000 13183000 38735000 50095000 27482000 35371000 18090000 31825000 1698100 47134000 14525000 17014000 14620000 37805000 48826000 27304000 34577000 6 6 3 6 6 6 6 6 6 6 6 12527000000 6073000000 6454000000 394 1409 375 2055;2056;2057;2058;2059;2060;2061;2062;2063;2064;2065;2066;2067 2528;2529;2530;2531;2532;2533;2534;2535;2536;2537;2538;2539;2540 2538 1894 13 ADKPDMGEIASFDK Acetyl (Protein N-term) 1564.7079 0.70792366 1409 P63313 TMSB10 Thymosin beta-10 yes yes 1 0 0 1 By MS/MS By MS/MS 3.67 1.43 1 2 2 3 3 1 6 6 63.592 63.489 2;3 5.0516E-33 19871 20211116_3431_TMUAki_TMT10x_P_F4 117.45 82.002 114260000 193120000 766570 245440000 101130000 98045000 96578000 50708000 38024000 55846000 121210000 106390000 180390000 9184400 244490000 96844000 107910000 96389000 54100000 44197000 54331000 114350000 12 12 4 12 12 12 12 12 12 12 12 41847000 66160000 47478 84115000 53204000 60237000 55612000 18774000 14689000 21537000 41703000 38961000 61802000 3323800 84186000 51055000 61906000 55017000 21263000 17693000 20920000 39393000 6 6 1 6 6 6 6 6 6 6 6 72413000 126960000 719090 161330000 47923000 37808000 40967000 31934000 23335000 34309000 79508000 67425000 118590000 5860600 160310000 45789000 46004000 41372000 32836000 26504000 33411000 74960000 6 6 3 6 6 6 6 6 6 6 6 18344000000 10139000000 8204500000 395 1409 375 2068;2069;2070;2071;2072;2073;2074;2075;2076;2077;2078;2079 2541;2542;2543;2544;2545;2546;2547;2548;2549;2550;2551;2552;2553 2544 13 ADLATAPPHVTVVR Unmodified 1445.7991 0.79906235 2188 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 0 0 0 0 By MS/MS By matching 5.33 0.471 2 1 2 1 39.674 39.731 3 0.00028586 9148 20211116_3434_TMUAki_TMT10x_P_F6 80.706 56.414 3150900 5015200 57021 5538800 8023900 7863200 4595400 4830800 4394600 3891500 4662100 2934100 4681700 371520 5648200 7610200 7799000 4834300 5036600 4489000 3839300 4489100 3 3 2 3 3 3 3 3 3 3 3 3150900 5015200 57021 5538800 8023900 7863200 4595400 4830800 4394600 3891500 4662100 2934100 4681700 371520 5648200 7610200 7799000 4834300 5036600 4489000 3839300 4489100 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 154230000 122140000 32094000 396 2188 376 2080;2081;2082 2554;2555;2556 2555 3 ADLDKLNIDSIIQR Acetyl (Protein N-term) 1654.889 0.88899957 957 P36873;P36873-2 PPP1CC Serine/threonine-protein phosphatase PP1-gamma catalytic subunit yes no 1 0 0 1 By MS/MS By MS/MS 4 0.707 1 2 1 3 1 77.464 77.436 2 2.8662E-09 25646 20211116_3431_TMUAki_TMT10x_P_F4 74.962 46.756 10125000 17872000 17593 12737000 11785000 18822000 12677000 12565000 12825000 13057000 13577000 9425800 16657000 721740 13448000 11314000 18659000 12816000 13106000 13067000 12732000 13074000 3 3 1 3 3 3 3 3 3 3 3 6467000 11463000 17593 8210800 6978700 14020000 8330900 8406800 8269500 8700700 8768700 6021000 10684000 491800 8692900 6722200 13798000 8377800 8839500 8433200 8485400 8443400 2 2 1 2 2 2 2 2 2 2 2 3657500 6409300 0 4526500 4806600 4802200 4345700 4158500 4555300 4356400 4808600 3404800 5973500 229940 4754900 4591400 4860700 4438600 4266500 4634000 4246500 4630900 1 1 0 1 1 1 1 1 1 1 1 2608000000 1994600000 613330000 397 957 377 2083;2084;2085;2086 2557;2558;2559 2557 3 ADLEAQRDVTYEEAK Unmodified 1736.8217 0.82170787 1295 P61106 RAB14 Ras-related protein Rab-14 yes yes 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 40.728 40.561 3 2.1669E-10 10324 20211116_3440_TMUAki_TMT10x_S_F2 139.08 121.83 2311100 3591500 35303 4594200 4956900 3890000 2723100 3050100 3574300 2493200 3621200 2152200 3355000 261570 4605400 4698900 3987400 2905300 3126900 3600600 2457900 3491700 3 3 3 3 3 3 3 3 3 3 3 1186200 1926700 23541 2346200 3728100 2971200 1645400 1563800 1773000 1200900 1809600 1104600 1799300 155880 2373200 3523800 2956700 1781900 1650100 1799500 1187800 1744600 1 1 1 1 1 1 1 1 1 1 1 1125000 1664800 11762 2248000 1228800 918790 1077700 1486400 1801300 1292300 1811500 1047600 1555600 105690 2232300 1175200 1030700 1123400 1476800 1801200 1270100 1747200 2 2 2 2 2 2 2 2 2 2 2 213800000 124380000 89420000 398 1295 378 2087;2088;2089 2560;2561;2562 2561 3 ADLEEQLSDEEK Acetyl (Protein N-term) 1446.6362 0.63619851 1062 P47755;P47755-2 CAPZA2 F-actin-capping protein subunit alpha-2 yes no 1 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 64.143 64.017 2 1.5124E-12 21773 20211116_3439_TMUAki_TMT10x_S_F1 140.75 121.97 7220900 12329000 0 12763000 9101400 11815000 8006600 7812000 8272500 8605700 9384100 6723200 11506000 598530 12976000 8697600 12005000 8186900 8168500 8443700 8372100 9018000 2 2 0 2 2 2 2 2 2 2 2 3480500 5888900 0 6312100 5496400 8075200 4682100 3579900 3834900 3970000 4490600 3240600 5496500 306560 6435800 5249100 8016700 4765600 3878400 3961700 3861300 4311600 1 1 0 1 1 1 1 1 1 1 1 3740400 6440100 0 6451000 3605000 3740200 3324500 4232100 4437600 4635700 4893500 3482500 6009400 291970 6539700 3448500 3988500 3421300 4290100 4482000 4510800 4706500 1 1 0 1 1 1 1 1 1 1 1 1045200000 558450000 486730000 399 1062 379 2090;2091 2563;2564 2564 2 ADLEEQLSDEEKVR Acetyl (Protein N-term) 1701.8057 0.80572345 1062 P47755;P47755-2 CAPZA2 F-actin-capping protein subunit alpha-2 yes no 1 0 0 1 By MS/MS 1 0 1 1 56.922 56.922 2 7.1197E-30 16850 20211116_3428_TMUAki_TMT10x_P_F1 188.04 173.26 776310 1635500 0 1366500 2151900 3918700 2004200 3041200 2522400 2317600 1787800 722700 1525100 67531 1451200 2058600 3814900 2056700 3114700 2517300 2293300 1747400 1 1 0 1 1 1 1 1 1 1 1 776310 1635500 0 1366500 2151900 3918700 2004200 3041200 2522400 2317600 1787800 722700 1525100 67531 1451200 2058600 3814900 2056700 3114700 2517300 2293300 1747400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 218500000 218500000 0 400 1062 380 2092 2565 2565 1 ADLIAYLK Unmodified 905.52222 0.52221879 1463 P99999 CYCS Cytochrome c yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 73.364 73.445 2 0.0019987 25011 20211116_3435_TMUAki_TMT10x_P_F7 114.93 51.446 35310000 56522000 276720 65587000 60291000 69322000 42056000 53127000 44970000 49416000 52845000 32879000 52775000 3535200 66325000 57368000 70026000 43703000 54722000 45901000 48415000 50734000 4 4 4 4 4 4 4 4 4 4 4 21383000 32783000 102910 39230000 41696000 53952000 26703000 31381000 26979000 29322000 30928000 19911000 30614000 2153200 39786000 39610000 53547000 27879000 32983000 27575000 28722000 29713000 2 2 2 2 2 2 2 2 2 2 2 13927000 23739000 173810 26357000 18594000 15370000 15352000 21747000 17990000 20094000 21917000 12969000 22161000 1382000 26539000 17758000 16479000 15824000 21739000 18326000 19693000 21021000 2 2 2 2 2 2 2 2 2 2 2 4523800000 2701500000 1822300000 401 1463 381 2093;2094;2095;2096 2566;2567;2568;2569 2566 4 ADLIAYLKK Unmodified 1033.6172 0.61718181 1463 P99999 CYCS Cytochrome c yes yes 0 0 0 1 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 67.18 66.857 3 7.9962E-05 21170 20211116_3440_TMUAki_TMT10x_S_F2 98.048 68.899 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 402 1463 382 2097;2098;2099 2570;2571;2572 2571 3 ADLINNLGTIAK Unmodified 1241.698 0.69795133 553;544;1914 P07900;P07900-2;Q14568;P08238;Q58FF8 HSP90AA1;HSP90AA2P;HSP90AB1;HSP90AB2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 no no 0 0 0 0 By MS/MS By MS/MS 5.76 2.39 4 1 4 4 4 8 11 14 68.858 68.922 2;3 2.5464E-30 23118 20211116_3446_TMUAki_TMT10x_S_F7 261.49 218.62 829890000 1393600000 2538900 1643800000 1381700000 1515900000 926660000 1219600000 1251200000 1092900000 1203700000 772660000 1301300000 69225000 1657300000 1313000000 1545500000 973790000 1251100000 1257000000 1072600000 1162600000 40 40 15 40 40 40 40 40 40 40 40 467040000 770200000 2084200 899590000 1092900000 1215200000 681350000 686030000 695150000 610000000 652940000 434860000 719170000 46468000 913310000 1037600000 1206600000 713070000 721930000 705090000 598890000 631170000 18 18 8 18 18 18 18 18 18 18 18 362850000 623360000 454670 744180000 288790000 300640000 245310000 533550000 556060000 482940000 550750000 337800000 582110000 22757000 744020000 275400000 338860000 260720000 529210000 551910000 473750000 531450000 22 22 7 22 22 22 22 22 22 22 22 139200000000 78529000000 60672000000 403 544;553;1914 383 2100;2101;2102;2103;2104;2105;2106;2107;2108;2109;2110;2111;2112;2113;2114;2115;2116;2117;2118;2119;2120;2121;2122;2123;2124 2573;2574;2575;2576;2577;2578;2579;2580;2581;2582;2583;2584;2585;2586;2587;2588;2589;2590;2591;2592;2593;2594;2595;2596;2597;2598;2599;2600;2601;2602;2603;2604;2605;2606;2607;2608;2609;2610;2611;2612;2613;2614;2615;2616 2601 44 ADLLLSTQPGREEGSPLELER Unmodified 2309.1863 0.18630381 551 P08195;P08195-3;P08195-2;P08195-4 SLC3A2 4F2 cell-surface antigen heavy chain yes no 0 0 0 1 By MS/MS By MS/MS 4.17 0.687 1 3 2 3 3 63.464 63.301 3 1.0138E-34 22559 20211116_3441_TMUAki_TMT10x_S_F3 181.85 163.09 8982100 14126000 54472 13892000 11090000 14653000 11151000 12027000 11323000 11956000 12018000 8363500 13180000 803170 14200000 10637000 14821000 11313000 12358000 11537000 11680000 11571000 4 4 2 4 4 4 4 4 4 4 4 5109900 8047300 0 7578100 5838300 10529000 6212800 7001900 6306400 6453700 6587200 4757700 7507200 412060 7808200 5606000 10465000 6285200 7280700 6421600 6325600 6345700 2 2 0 2 2 2 2 2 2 2 2 3872200 6078700 54472 6313800 5251300 4123700 4938400 5024700 5017000 5502300 5430400 3605800 5673000 391120 6391800 5030700 4356300 5028000 5077600 5115200 5354200 5225700 2 2 2 2 2 2 2 2 2 2 2 1804800000 572740000 1232000000 404 551 384 2125;2126;2127;2128;2129;2130 2617;2618;2619;2620;2621;2622;2623 2621 7 ADLLQREEEEEEEEDQEGDRETTIR Unmodified 3047.3439 0.34393925 1781 Q15269 PWP2 Periodic tryptophan protein 2 homolog yes yes 0 0 0 2 By MS/MS By MS/MS 1.2 0.4 4 1 2 3 45.807 45.744 3;4 1.5586E-193 12550 20211116_3440_TMUAki_TMT10x_S_F2 423.21 398.97 9691900 17251000 25363 18982000 11036000 13056000 8786200 15371000 14947000 13759000 14251000 9022700 16104000 597790 19154000 10513000 13718000 9220500 15463000 14911000 13505000 13769000 9 9 1 9 9 9 9 9 9 9 9 2933100 5029500 0 5794400 5568600 7858200 4725900 4427100 4712900 3926500 4100300 2730300 4695900 185510 5888000 5312100 7801000 4837300 4659300 4773400 3855500 3974300 4 4 0 4 4 4 4 4 4 4 4 6758800 12222000 25363 13187000 5467000 5197400 4060300 10944000 10234000 9832900 10151000 6292400 11408000 412280 13266000 5200900 5916800 4383200 10804000 10138000 9649100 9794600 5 5 1 5 5 5 5 5 5 5 5 4279500000 2658200000 1621300000 405 1781 385 2131;2132;2133;2134;2135 2624;2625;2626;2627;2628;2629;2630;2631;2632;2633 2632 10 ADLPEGVAVSGPSPAEFCRK Unmodified 2086.0153 0.015339073 2156 Q8IXI1 RHOT2 Mitochondrial Rho GTPase 2 yes yes 0 0 0 1 By MS/MS 6 0 1 1 54.859 54.947 3 0.0010878 15471 20211116_3434_TMUAki_TMT10x_P_F6 65.022 36.442 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 406 2156 386 2136 2634 2634 1 ADLSLADALTEPSPDIEGEIKR Acetyl (Protein N-term) 2381.1962 0.19619979 833 P27816;P27816-6;P27816-2;P27816-5;P27816-7 MAP4 Microtubule-associated protein 4 yes no 1 0 0 1 By MS/MS 1.5 0.5 1 1 2 78.506 78.49 3 2.2716E-10 25694 20211116_3428_TMUAki_TMT10x_P_F1 70.897 58.38 1847400 2851900 36964 2946400 1865900 3634900 2335500 2124500 2014500 1999300 2389900 1720400 2661500 187870 3009400 1803200 3626600 2334500 2232500 2076700 1957800 2293900 1 1 1 1 1 1 1 1 1 1 1 1847400 2851900 36964 2946400 1865900 3634900 2335500 2124500 2014500 1999300 2389900 1720400 2661500 187870 3009400 1803200 3626600 2334500 2232500 2076700 1957800 2293900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 861680000 861680000 0 407 833 387 2137;2138 2635 2635 1 ADLVIVGAEGVVENGGIINK Unmodified 1966.0735 0.073505879 1696 Q14232 EIF2B1 Translation initiation factor eIF-2B subunit alpha yes yes 0 0 0 0 By MS/MS By MS/MS 5 1 1 1 3 3 4 4 78.813 78.797 3;4 1.7181E-18 26470 20211116_3433_TMUAki_TMT10x_P_F5 152.71 130.51 17985000 29877000 164640 26550000 21608000 27619000 22730000 19801000 19220000 20988000 23161000 16746000 27866000 1619200 27337000 20752000 27895000 22889000 20562000 19847000 20449000 22221000 7 7 4 7 7 7 7 7 7 7 7 7728700 12111000 147250 10915000 7618400 15255000 8542100 8154000 7930400 8521300 9273800 7197300 11296000 776450 11285000 7337000 15114000 8597300 8659800 8142200 8307200 8904500 3 3 3 3 3 3 3 3 3 3 3 10256000 17766000 17385 15635000 13989000 12364000 14188000 11647000 11290000 12467000 13888000 9548700 16570000 842730 16052000 13415000 12781000 14291000 11903000 11705000 12142000 13316000 4 4 1 4 4 4 4 4 4 4 4 4650700000 1944800000 2705900000 408 1696 388 2139;2140;2141;2142;2143;2144;2145;2146 2636;2637;2638;2639;2640;2641;2642 2636 7 ADMQNLVER Acetyl (Protein N-term);Oxidation (M) 1132.5183 0.5182724 1482 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 yes no 1 0 1 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 34.118 34.136 2 0.00083516 7820 20211116_3428_TMUAki_TMT10x_P_F1 68.625 63.77 578740 924390 2248.9 969710 952760 852110 610390 878600 896090 727890 906780 538840 862720 50127 984310 904740 875920 645890 887450 899490 717110 874400 3 3 1 3 3 3 3 3 3 3 3 245320 371180 0 411770 638370 545520 307580 356190 348830 261010 397460 228400 346500 22722 419200 603580 543240 330560 368850 354800 258830 381910 1 1 0 1 1 1 1 1 1 1 1 333410 553210 2248.9 557950 314390 306590 302810 522420 547260 466890 509320 310440 516220 27404 565100 301160 332690 315320 518600 544700 458280 492490 2 2 1 2 2 2 2 2 2 2 2 97965000 63177000 34788000 409 1482 389 2147;2148;2149 2643;2644;2645 2643 2007 3 ADMQNLVER Acetyl (Protein N-term) 1116.5234 0.52335778 1482 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 yes no 1 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 51.714 51.573 2 0.00021771 14678 20211116_3428_TMUAki_TMT10x_P_F1 90.657 79.288 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 410 1482 389 2150;2151 2646;2647 2646 2 ADPEELFTKLEK Unmodified 1418.7293 0.72931103 3348 Q9Y6E0;Q9Y6E0-2 STK24 Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit yes no 0 0 0 1 By MS/MS 5 0 1 1 68.508 68.596 3 0.014812 22295 20211116_3433_TMUAki_TMT10x_P_F5 58.079 37.972 6465900 9514100 70285 9712500 7632700 11789000 7393100 5737200 5147900 6086700 7185100 6020900 8878400 617910 9925400 7316900 11746000 7442200 6149000 5407600 5930200 6868200 1 1 1 1 1 1 1 1 1 1 1 6465900 9514100 70285 9712500 7632700 11789000 7393100 5737200 5147900 6086700 7185100 6020900 8878400 617910 9925400 7316900 11746000 7442200 6149000 5407600 5930200 6868200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 281560000 281560000 0 411 3348 390 2152 2648 2648 1 ADPSIVQALSLYDGLV Unmodified 1659.872 0.87195253 1335 P62166;P62166-2 NCS1 Neuronal calcium sensor 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.67 1.49 3 3 4 1 1 5 7 84.079 84.076 2;3 3.6724E-10 28352 20211116_3431_TMUAki_TMT10x_P_F4 124.67 102.14 2765000 4408900 32800 4751200 3255000 5432100 3295500 2935300 3139200 3337000 3697000 2574600 4115300 256800 4833000 3123400 5435800 3335800 3122400 3220300 3242600 3549100 9 9 6 9 9 9 9 9 9 9 9 1915500 2978900 19084 3188500 2089500 4441300 2200700 2051200 2250400 2366400 2565200 1783700 2780400 173000 3256700 2007100 4393500 2228000 2215600 2298400 2298200 2464800 5 5 3 5 5 5 5 5 5 5 5 849440 1430100 13716 1562700 1165500 990780 1094800 884100 888810 970650 1131700 790980 1334900 83798 1576300 1116300 1042200 1107800 906860 921850 944430 1084200 4 4 3 4 4 4 4 4 4 4 4 327520000 207760000 119760000 412 1335 391 2153;2154;2155;2156;2157;2158;2159;2160;2161;2162;2163;2164 2649;2650;2651;2652;2653;2654;2655;2656;2657 2652 9 ADQDRLDLEER Unmodified 1358.6426 0.64262129 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 33.298 33.227 3 1.6753E-06 9234 20211116_3439_TMUAki_TMT10x_S_F1 123.28 92.712 1468800 2107200 11188 2424300 2923100 2383300 1667100 1687500 1859200 1419400 2120500 1367600 1967500 138120 2450200 2771000 2414800 1762700 1742800 1892300 1397300 2037500 3 3 1 3 3 3 3 3 3 3 3 1007900 1393800 0 1606400 2482100 1978100 1177700 1120000 1219500 926370 1407400 938380 1301300 89759 1629300 2346200 1973000 1264000 1176300 1245400 912720 1351900 2 2 0 2 2 2 2 2 2 2 2 460890 713490 11188 817890 441040 405140 489490 567490 639690 493050 713120 429220 666150 48360 820840 424790 441840 498630 566560 646810 484600 685650 1 1 1 1 1 1 1 1 1 1 1 123760000 83136000 40627000 413 1723 392 2165;2166;2167 2658;2659;2660 2660 3 ADQELMTYSHDNIICGITSVSFSK Oxidation (M) 2731.2469 0.24693151 1376 P62873;P62873-2 GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 yes no 0 0 1 0 By MS/MS 7 0 1 1 73.381 73.66 4 0.00095273 25107 20211116_3435_TMUAki_TMT10x_P_F7 60.472 46.456 7488100 12320000 158210 11037000 7104400 15574000 8048600 9008500 8798600 8999500 8864900 6973400 11491000 762880 11418000 6845300 15439000 8137900 9490300 8920600 8789700 8549600 2 2 2 2 2 2 2 2 2 2 2 7488100 12320000 158210 11037000 7104400 15574000 8048600 9008500 8798600 8999500 8864900 6973400 11491000 762880 11418000 6845300 15439000 8137900 9490300 8920600 8789700 8549600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 873750000 873750000 0 414 1376 393 2168 2661;2662 2661 1848 2 ADQLCQQELR Unmodified 1259.5928 0.59283433 995 P41219;P41219-2 PRPH Peripherin yes no 0 0 0 0 By MS/MS 2 0 1 1 33.254 33.335 2 0.011767 7571 20211116_3440_TMUAki_TMT10x_S_F2 64.04 44.942 36954 51174 0 57617 41789 30859 38541 32074 39284 30786 48510 34405 47775 2705.4 57924 39960 33115 39286 32511 40259 30120 46510 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36954 51174 0 57617 41789 30859 38541 32074 39284 30786 48510 34405 47775 2705.4 57924 39960 33115 39286 32511 40259 30120 46510 1 1 0 1 1 1 1 1 1 1 1 837640 0 837640 415 995 394 2169 2663 2663 1 ADQLTEEQIAEFK Acetyl (Protein N-term) 1562.7464 0.74641766 599 P0DP25;P0DP24;P0DP23 yes no 1 0 0 0 By MS/MS By MS/MS 2.32 0.837 12 43 25 6 1 47 40 45.098 45.009 2;3 5.6116E-26 24483 20211116_3428_TMUAki_TMT10x_P_F1 161.76 139.68 122550000 197330000 597550 206310000 122060000 161010000 129970000 99989000 99760000 108230000 137960000 114100000 184170000 9763200 209160000 117220000 165450000 130490000 104990000 104170000 105360000 131900000 76 76 32 76 76 76 76 76 76 76 76 68095000 105630000 354580 111540000 65875000 111280000 73430000 54372000 56488000 60080000 74637000 63400000 98585000 5219000 113370000 63330000 112100000 73564000 58325000 58852000 58442000 71438000 44 44 15 44 44 44 44 44 44 44 44 54456000 91704000 242970 94777000 56189000 49728000 56541000 45618000 43272000 48150000 63319000 50704000 85581000 4544200 95797000 53887000 53345000 56922000 46664000 45314000 46922000 60461000 32 32 17 32 32 32 32 32 32 32 32 71494000000 37248000000 34247000000 416 599 395 2170;2171;2172;2173;2174;2175;2176;2177;2178;2179;2180;2181;2182;2183;2184;2185;2186;2187;2188;2189;2190;2191;2192;2193;2194;2195;2196;2197;2198;2199;2200;2201;2202;2203;2204;2205;2206;2207;2208;2209;2210;2211;2212;2213;2214;2215;2216;2217;2218;2219;2220;2221;2222;2223;2224;2225;2226;2227;2228;2229;2230;2231;2232;2233;2234;2235;2236;2237;2238;2239;2240;2241;2242;2243;2244;2245;2246;2247;2248;2249;2250;2251;2252;2253;2254;2255;2256 2664;2665;2666;2667;2668;2669;2670;2671;2672;2673;2674;2675;2676;2677;2678;2679;2680;2681;2682;2683;2684;2685;2686;2687;2688;2689;2690;2691;2692;2693;2694;2695;2696;2697;2698;2699;2700;2701;2702;2703;2704;2705;2706;2707;2708;2709;2710;2711;2712;2713;2714;2715;2716;2717;2718;2719;2720;2721;2722;2723;2724;2725;2726;2727;2728;2729;2730;2731;2732;2733;2734;2735;2736;2737;2738;2739;2740;2741;2742;2743;2744;2745;2746;2747;2748;2749;2750;2751 2664 88 ADQLTEEQIAEFKEAFSLFDK Acetyl (Protein N-term) 2500.201 0.20095082 599 P0DP25;P0DP24;P0DP23 yes no 1 0 0 1 By MS/MS By MS/MS 3.33 0.943 1 2 2 1 83.197 83.198 3 3.3486E-26 28390 20211116_3442_TMUAki_TMT10x_S_F4 125.88 116.72 3918200 6155300 21773 3859300 3848900 6573600 4392500 3625700 3792200 4008700 5034700 3648400 5735000 344160 4139900 3705500 6463100 4408500 3846600 3928200 3899300 4818300 3 3 3 3 3 3 3 3 3 3 3 3239900 4925800 12670 3029900 2750900 5788400 3453700 2955100 3100200 3206600 4068500 3016800 4589200 273570 3266100 2656100 5663000 3455500 3155100 3203800 3121300 3894800 2 2 2 2 2 2 2 2 2 2 2 678260 1229500 9102.9 829420 1098000 785240 938780 670580 691930 802140 966150 631590 1145800 70594 873740 1049300 800100 952920 691530 724450 777990 923520 1 1 1 1 1 1 1 1 1 1 1 321050000 264600000 56445000 417 599 396 2257;2258;2259 2752;2753;2754 2754 3 ADQLTEEQIAEFKEAFSLFDKDGDGTITTK Acetyl (Protein N-term) 3388.6198 0.61982675 599 P0DP25;P0DP24;P0DP23 yes no 1 0 0 2 By MS/MS By MS/MS 3.89 1.73 2 2 4 3 3 3 1 8 10 81.404 81.395 3;4 1.1947E-56 28786 20211116_3430_TMUAki_TMT10x_P_F3 180.85 175.4 71275000 146730000 636480 52864000 170380000 212370000 136260000 197570000 184300000 184470000 154860000 66361000 136570000 6941100 62945000 162480000 206180000 141490000 201230000 184350000 180710000 150300000 18 18 11 18 18 18 18 18 18 18 18 27415000 55515000 311220 19597000 36522000 98808000 54941000 74746000 69755000 68966000 54874000 25527000 51667000 2599600 23713000 35495000 95233000 55225000 77038000 69788000 67594000 53395000 9 9 6 9 9 9 9 9 9 9 9 43860000 91218000 325260 33267000 133850000 113570000 81321000 122830000 114540000 115510000 99983000 40834000 84899000 4341600 39232000 126990000 110950000 86263000 124200000 114560000 113110000 96901000 9 9 5 9 9 9 9 9 9 9 9 26226000000 11023000000 15202000000 418 599 397 2260;2261;2262;2263;2264;2265;2266;2267;2268;2269;2270;2271;2272;2273;2274;2275;2276;2277 2755;2756;2757;2758;2759;2760;2761;2762;2763;2764;2765;2766;2767;2768;2769;2770;2771;2772 2757 18 ADQQYECVAEIGEGAYGK Unmodified 1986.8629 0.86292076 1469 Q00534 CDK6 Cyclin-dependent kinase 6 yes yes 0 0 0 0 By MS/MS By MS/MS 2.8 0.748 2 2 1 3 2 60.513 60.192 3 2.9783E-10 18592 20211116_3431_TMUAki_TMT10x_P_F4 109.54 98.6 8339200 14528000 25777 15075000 10614000 14378000 9658300 9293200 8578100 9139300 10493000 7764300 13558000 685500 15330000 10151000 14576000 9813400 9700700 8842000 8932300 10063000 4 4 1 4 4 4 4 4 4 4 4 6009800 10046000 25777 10211000 8478400 12632000 7881600 6335100 6263200 6624700 7658800 5595500 9374500 512840 10441000 8113200 12578000 7975800 6767500 6492100 6458100 7345000 3 3 1 3 3 3 3 3 3 3 3 2329400 4482200 0 4863800 2135500 1746500 1776700 2958100 2314900 2514700 2834400 2168800 4183800 172650 4888300 2037500 1998700 1837600 2933100 2349900 2474200 2718200 1 1 0 1 1 1 1 1 1 1 1 4370900000 2934100000 1436800000 419 1469 398 2278;2279;2280;2281;2282 2773;2774;2775;2776;2777;2778 2776 6 ADRDESSPYAAMLAAQDVAQR Oxidation (M) 2280.0441 0.044073019 1343 P62263 RPS14 40S ribosomal protein S14 yes yes 0 0 1 1 By MS/MS By MS/MS 2.88 0.992 2 2 9 2 1 10 6 40.916 40.883 3;4 1.073E-28 12259 20211116_3430_TMUAki_TMT10x_P_F3 179.84 165.07 9552400 15695000 85985 17299000 14131000 19206000 10882000 16521000 17025000 13499000 14166000 8894400 14651000 580180 17563000 13469000 19388000 11398000 16842000 16950000 13309000 13754000 23 23 8 23 23 23 23 23 23 23 23 5868200 9642700 61473 10514000 11188000 16266000 8291600 10218000 10350000 8321400 8424100 5464200 9000900 390650 10750000 10657000 16080000 8625700 10637000 10371000 8205200 8186000 15 15 6 15 15 15 15 15 15 15 15 3684200 6052000 24512 6785700 2942700 2939400 2590000 6303000 6674600 5178000 5742300 3430200 5649900 189530 6813200 2812000 3307300 2772000 6205000 6578400 5103500 5568300 8 8 2 8 8 8 8 8 8 8 8 5480500000 3368900000 2111600000 420 1343 399 2283;2284;2285;2286;2287;2288;2289;2290;2291;2292;2293;2294;2295;2296;2297;2298 2779;2780;2781;2782;2783;2784;2785;2786;2787;2788;2789;2790;2791;2792;2793;2794;2795;2796;2797;2798;2799;2800;2801;2802 2787 1804 24 ADRDESSPYAAMLAAQDVAQR Unmodified 2264.0492 0.049158397 1343 P62263 RPS14 40S ribosomal protein S14 yes yes 0 0 0 1 By MS/MS By MS/MS 4 0.816 2 2 2 2 4 55.303 55.248 3 6.3936E-45 19245 20211116_3441_TMUAki_TMT10x_S_F3 215.65 199.34 18365000 31067000 68282 33863000 22262000 24078000 20065000 14090000 13402000 14688000 20813000 17100000 28999000 1511100 34202000 21286000 24908000 20261000 14848000 14189000 14321000 19848000 9 9 2 9 9 9 9 9 9 9 9 10189000 17135000 26487 18112000 14343000 18188000 13443000 8282200 7911500 8363300 11605000 9486100 15992000 815360 18409000 13724000 18301000 13511000 8923100 8421700 8164700 11081000 5 5 1 5 5 5 5 5 5 5 5 8176700 13932000 41795 15751000 7918700 5890100 6621900 5808000 5490300 6324900 9208200 7613500 13007000 695770 15793000 7561600 6606800 6749700 5924800 5766900 6156000 8767800 4 4 1 4 4 4 4 4 4 4 4 6235700000 2594500000 3641200000 421 1343 399 2299;2300;2301;2302;2303;2304 2803;2804;2805;2806;2807;2808;2809;2810;2811;2812 2809 10 ADSELQLVEQR Acetyl (Protein N-term) 1328.6572 0.65720872 541 P07741;P07741-2 APRT Adenine phosphoribosyltransferase yes no 1 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 58.363 58.214 2 1.5022E-14 17363 20211116_3428_TMUAki_TMT10x_P_F1 120.31 86.948 8301700 16366000 622240 15871000 12813000 18275000 12110000 18703000 18129000 15897000 15800000 7734300 15269000 1331400 16262000 12306000 18478000 12506000 18910000 18097000 15642000 15314000 2 2 2 2 2 2 2 2 2 2 2 3891400 8169700 308340 7957900 8215000 13036000 7357500 8866800 7853400 7080200 7449100 3625600 7622400 670540 8209200 7874000 12873000 7523300 9172000 7953400 6988500 7198400 1 1 1 1 1 1 1 1 1 1 1 4410300 8196100 313900 7912800 4598500 5239100 4752100 9836000 10275000 8817000 8350700 4108800 7646800 660820 8052400 4432100 5605400 4983200 9738100 10143000 8653100 8115200 1 1 1 1 1 1 1 1 1 1 1 2438000000 1332700000 1105300000 422 541 400 2305;2306 2813;2814 2813 2 ADSGTAGGAALAAPAPGPGSGGPGPR Acetyl (Protein N-term) 2158.0403 0.04030827 2423 Q96C90 PPP1R14B Protein phosphatase 1 regulatory subunit 14B yes yes 1 0 0 0 By MS/MS By MS/MS 3.14 0.639 1 4 2 3 4 46.714 46.671 2;3 1.128E-153 15798 20211116_3441_TMUAki_TMT10x_S_F3 180.56 161.32 6804900 11108000 42981 13287000 11249000 9599500 8428300 7044800 6393600 6418800 8778300 6335500 10373000 344980 13346000 10712000 9949400 8633700 7272900 6678100 6294700 8394200 5 5 2 5 5 5 5 5 5 5 5 3943000 6630200 8379 7843400 8811600 7735200 5706500 4493500 3813900 3917100 5162900 3670900 6191200 121770 7914200 8367700 7813900 5892100 4715000 4010700 3849400 4938700 3 3 1 3 3 3 3 3 3 3 3 2861900 4477900 34602 5443900 2437600 1864300 2721800 2551300 2579700 2501700 3615300 2664600 4181900 223210 5431900 2343900 2135500 2741600 2557900 2667300 2445300 3455500 2 2 1 2 2 2 2 2 2 2 2 1477000000 977050000 499910000 423 2423 401 2307;2308;2309;2310;2311;2312;2313 2815;2816;2817;2818;2819;2820 2819 6 ADSLLAVVK Unmodified 914.54368 0.54368251 1804;1683 Q15424;Q15424-3;Q15424-2;Q15424-4;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 no no 0 0 0 0 By MS/MS 7 0 1 1 63.534 64.205 2 2.4054E-05 21097 20211116_3435_TMUAki_TMT10x_P_F7 140.5 105.4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 424 1804;1683 402 2314 2821 2821 1 ADSLLAVVKR Unmodified 1070.6448 0.64479354 1804;1683 Q15424;Q15424-3;Q15424-2;Q15424-4;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 no no 0 0 0 1 By MS/MS 2 0 1 1 54.88 54.674 3 4.5969E-09 16220 20211116_3440_TMUAki_TMT10x_S_F2 131.09 99.593 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 425 1804;1683 403 2315 2822 2822 1 ADTLDPALLRPGR Unmodified 1393.7678 0.76776222 1032 P43686;P43686-2 PSMC4 26S protease regulatory subunit 6B yes no 0 0 0 1 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 47.718 47.859 3 1.4716E-11 12962 20211116_3445_TMUAki_TMT10x_S_F6 145 119.06 8777400 14188000 68869 17029000 20546000 17063000 11342000 9588400 9210000 8679600 12054000 8172200 13250000 832640 17173000 19465000 17213000 11920000 10099000 9563800 8514400 11540000 3 3 2 3 3 3 3 3 3 3 3 7086600 11408000 28606 13624000 19224000 15604000 10083000 7315000 6868700 6649600 9518800 6597500 10653000 660100 13772000 18196000 15588000 10606000 7835800 7222400 6521800 9100400 2 2 1 2 2 2 2 2 2 2 2 1690800 2780900 40263 3404800 1322100 1458900 1258700 2273400 2341300 2030000 2534900 1574600 2597200 172540 3400300 1268500 1624600 1313600 2263000 2341400 1992600 2439300 1 1 1 1 1 1 1 1 1 1 1 1091600000 598450000 493160000 426 1032 404 2316;2317;2318 2823;2824;2825 2825 3 ADTLDPALLRPGRLDR Unmodified 1777.9799 0.97988027 1032 P43686;P43686-2 PSMC4 26S protease regulatory subunit 6B yes no 0 0 0 2 By MS/MS By MS/MS 6.5 0.5 4 4 4 4 47.702 48.059 3;4 2.1962E-10 12602 20211116_3434_TMUAki_TMT10x_P_F6 128.9 87.252 14640000 24202000 125430 25482000 24250000 28760000 17413000 23564000 22131000 19538000 21560000 13632000 22588000 1406100 25955000 23084000 28980000 18167000 24100000 22287000 19248000 20816000 9 9 5 9 9 9 9 9 9 9 9 9492200 15493000 103950 16194000 18790000 24080000 13374000 15073000 14438000 12791000 14314000 8838700 14460000 981260 16589000 17885000 23842000 13882000 15712000 14637000 12587000 13812000 6 6 4 6 6 6 6 6 6 6 6 5148000 8708500 21480 9287700 5460400 4679900 4039000 8491000 7692400 6747300 7245700 4793300 8128100 424840 9365200 5199600 5137500 4284400 8388600 7650000 6661600 7003500 3 3 1 3 3 3 3 3 3 3 3 4113900000 2490900000 1623000000 427 1032 405 2319;2320;2321;2322;2323;2324;2325;2326 2826;2827;2828;2829;2830;2831;2832;2833;2834;2835 2827 10 ADTLSLPWK Unmodified 1029.5495 0.54949617 3104 Q9UFH2 DNAH17 Dynein heavy chain 17, axonemal yes yes 0 0 0 0 By MS/MS By MS/MS 5 1.49 2 2 1 2 2 4 5 82.575 82.572 2 0.0093844 28123 20211116_3442_TMUAki_TMT10x_S_F4 71.029 40.371 6428900 10155000 36657 10497000 7315100 10020000 7264800 6206000 6120400 6986800 8144900 5985900 9477200 465000 10677000 7012300 10152000 7336200 6525700 6348300 6791500 7794400 9 9 4 9 9 9 9 9 9 9 9 4169500 6508300 32408 6772100 4271900 7345700 4545500 4040700 3931500 4552800 5311200 3882300 6073900 288540 6898600 4103800 7373700 4577300 4290500 4075400 4425400 5080800 5 5 3 5 5 5 5 5 5 5 5 2259400 3646900 4249.6 3724400 3043200 2674400 2719300 2165300 2188900 2434000 2833800 2103500 3403300 176460 3778400 2908400 2777800 2758800 2235300 2272900 2366100 2713700 4 4 1 4 4 4 4 4 4 4 4 1396700000 705340000 691330000 428 3104 406 2327;2328;2329;2330;2331;2332;2333;2334;2335 2836;2837;2838;2839;2840;2841;2842;2843;2844 2842 9 ADTLTLEER Unmodified 1046.5244 0.52440364 3118 Q9UHD8-5;Q9UHD8;Q9UHD8-2;Q9UHD8-7;Q9UHD8-3;Q9UHD8-4;Q9UHD8-9;Q9UHD8-8 SEPT9 Septin-9 yes no 0 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 39.444 39.348 2 8.7382E-08 11389 20211116_3429_TMUAki_TMT10x_P_F2 211.48 156.71 5652100 8189300 4073.6 8934400 6990700 6450500 5683300 4716900 5010000 4544400 6408100 5262400 7644300 451500 9024800 6667900 6685600 5812300 4878200 5175900 4445400 6138400 6 6 2 6 6 6 6 6 6 6 6 2710700 3781100 2314.3 4215100 4186000 4037400 2686900 2160600 2291200 2160200 2899500 2523700 3529800 223290 4266800 3974700 4081800 2791600 2291400 2369800 2109800 2778200 3 3 1 3 3 3 3 3 3 3 3 2941400 4408200 1759.3 4719400 2804700 2413200 2996400 2556300 2718700 2384100 3508700 2738600 4114500 228210 4758100 2693200 2603800 3020700 2586700 2806000 2335600 3360200 3 3 1 3 3 3 3 3 3 3 3 690180000 427300000 262880000 429 3118 407 2336;2337;2338;2339;2340;2341 2845;2846;2847;2848;2849 2845 5 ADTLTPEECQQFK Unmodified 1565.7032 0.70317264 1838 Q16181;Q16181-2 SEPT7 Septin-7 yes no 0 0 0 0 By MS/MS 3 0 1 1 48.117 48.086 3 0.0001576 15268 20211116_3430_TMUAki_TMT10x_P_F3 84.352 33.521 579370 867760 9221.2 1133300 1467100 1398200 769480 811170 818810 638730 825160 539520 810710 69060 1141300 1389700 1394900 818520 849210 831070 630920 795800 1 1 1 1 1 1 1 1 1 1 1 579370 867760 9221.2 1133300 1467100 1398200 769480 811170 818810 638730 825160 539520 810710 69060 1141300 1389700 1394900 818520 849210 831070 630920 795800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 140990000 140990000 0 430 1838 408 2342 2850 2850 1 ADTNLGNILLNVLIPPNMPCTR Oxidation (M) 2451.2614 0.26139978 3162 Q9UKX7;Q9UKX7-2 NUP50 Nuclear pore complex protein Nup50 yes no 0 0 1 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 81.459 81.437 3 1.9206E-08 27661 20211116_3442_TMUAki_TMT10x_S_F4 100.85 91.059 2703900 4660600 91432 4319400 3064600 4323800 3463000 2893300 3159700 3069300 3714900 2518200 4347500 308830 4430700 2953700 4372400 3482500 3019100 3247400 2990400 3566400 4 4 3 4 4 4 4 4 4 4 4 1492700 2370700 70880 2178400 1304800 2727600 1596100 1619200 1672200 1591000 2015700 1390400 2211400 187180 2244100 1262700 2719900 1606100 1701400 1710100 1555000 1933900 2 2 2 2 2 2 2 2 2 2 2 1211100 2289900 20552 2141000 1759800 1596200 1866900 1274000 1487500 1478300 1699200 1127800 2136100 121650 2186600 1691000 1652500 1876400 1317700 1537400 1435400 1632600 2 2 1 2 2 2 2 2 2 2 2 1321900000 649580000 672280000 431 3162 409 2343;2344;2345;2346 2851;2852;2853;2854 2853 3171 4 ADTNLGNILLNVLIPPNMPCTR Unmodified 2435.2665 0.26648516 3162 Q9UKX7;Q9UKX7-2 NUP50 Nuclear pore complex protein Nup50 yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 82.208 82.211 3 2.5221E-35 27587 20211116_3431_TMUAki_TMT10x_P_F4 187.07 177.15 4112100 6579600 41687 6851800 4616300 4358500 4909100 2615500 2306200 3083000 4920800 3828700 6140500 258770 6933500 4433000 4554800 4883600 2761200 2552900 2991700 4666000 4 4 2 4 4 4 4 4 4 4 4 897180 1388700 0 1501600 854110 1194500 1072500 561110 382450 628090 1121300 834980 1296200 25589 1519300 821310 1221600 1055100 604470 445490 610660 1058800 1 1 0 1 1 1 1 1 1 1 1 3214900 5190900 41687 5350200 3762200 3164100 3836600 2054400 1923800 2454900 3799500 2993700 4844300 233180 5414100 3611700 3333200 3828500 2156700 2107400 2381100 3607200 3 3 2 3 3 3 3 3 3 3 3 997780000 471130000 526650000 432 3162 409 2347;2348;2349 2855;2856;2857;2858 2855 4 ADVDISGPK Unmodified 900.45526 0.45526144 1555 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 38.413 38.517 2 0.0019204 10759 20211116_3430_TMUAki_TMT10x_P_F3 91.867 15.697 846880 1422600 0 1500600 905750 977950 877450 1344800 1370700 1096400 1311400 788480 1327700 64675 1517500 867350 1036800 906780 1341300 1370800 1081000 1266900 2 2 0 2 2 2 2 2 2 2 2 120480 169030 0 195590 186960 247800 126630 136350 162800 125820 162190 112170 157830 9397.8 198440 177650 246720 132720 143940 164020 123320 156480 1 1 0 1 1 1 1 1 1 1 1 726400 1253600 0 1305000 718800 730140 750820 1208400 1207900 970580 1149200 676310 1169900 55277 1319100 689710 790030 774060 1197400 1206800 957720 1110400 1 1 0 1 1 1 1 1 1 1 1 30482000 7669500 22813000 433 1555 410 2350;2351 2859;2860 2859 2 ADVDVQPYAFTTK Unmodified 1453.7089 0.70890994 2735 Q9BZE4;Q9BZE4-3;Q9BZE4-2 GTPBP4 Nucleolar GTP-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 5 0 3 2 1 58.914 59.096 2;3 2.2243E-06 18342 20211116_3433_TMUAki_TMT10x_P_F5 105.36 76.782 4887100 7645000 73710 8509000 8007600 10123000 6099600 5739000 5220700 4860000 5998800 4550900 7136900 517580 8643700 7634600 10114000 6259700 6029900 5377200 4782800 5762700 1 1 1 1 1 1 1 1 1 1 1 4887100 7645000 73710 8509000 8007600 10123000 6099600 5739000 5220700 4860000 5998800 4550900 7136900 517580 8643700 7634600 10114000 6259700 6029900 5377200 4782800 5762700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 319330000 319330000 0 434 2735 411 2352;2353;2354 2861;2862;2863 2862 3 ADVFHAYLSLLK Unmodified 1375.75 0.7499869 2116 Q86VP6;Q86VP6-2;Q86VP6-3 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 78.719 78.708 3 1.3358E-07 26541 20211116_3442_TMUAki_TMT10x_S_F4 131.69 99.683 16398000 27432000 0 29335000 14910000 22100000 18962000 12235000 13557000 15398000 17155000 15267000 25604000 1186200 29684000 14388000 22738000 18854000 13032000 14157000 14909000 16437000 2 2 0 2 2 2 2 2 2 2 2 8193700 13718000 0 14547000 8519700 14094000 8957700 6071900 6973900 7567600 8252100 7628600 12803000 614380 14775000 8175600 14206000 9001900 6623100 7226900 7329300 7921000 1 1 0 1 1 1 1 1 1 1 1 8204600 13714000 0 14788000 6390400 8005600 10004000 6162900 6583600 7830800 8902900 7638600 12801000 571860 14909000 6212900 8532500 9852600 6408900 6929700 7579200 8516500 1 1 0 1 1 1 1 1 1 1 1 3126800000 1870600000 1256200000 435 2116 412 2355;2356 2864;2865 2865 2 ADVIQATGDAICIFR Unmodified 1648.8243 0.82429083 1550 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.82 1.26 2 3 4 8 11 21 7 68.295 68.315 2;3 1.263E-60 27131 20211116_3446_TMUAki_TMT10x_S_F7 299.66 267.79 88135000 145300000 444090 133970000 103110000 126440000 106590000 87830000 77665000 94418000 107240000 82060000 135540000 7255100 137360000 98940000 128400000 107050000 91445000 81326000 91942000 102540000 26 26 11 26 26 26 26 26 26 26 26 38998000 60090000 192800 56502000 34007000 69732000 42295000 38381000 32590000 41464000 44337000 36310000 56057000 3010300 58092000 32806000 69518000 42168000 40698000 33996000 40369000 42407000 16 16 9 16 16 16 16 16 16 16 16 49137000 85209000 251280 77473000 69106000 56704000 64299000 49449000 45075000 52954000 62903000 45750000 79480000 4244900 79271000 66134000 58884000 64877000 50748000 47330000 51574000 60129000 10 10 2 10 10 10 10 10 10 10 10 24718000000 9677500000 15041000000 436 1550 413 2357;2358;2359;2360;2361;2362;2363;2364;2365;2366;2367;2368;2369;2370;2371;2372;2373;2374;2375;2376;2377;2378;2379;2380;2381;2382;2383;2384 2866;2867;2868;2869;2870;2871;2872;2873;2874;2875;2876;2877;2878;2879;2880;2881;2882;2883;2884;2885;2886;2887;2888;2889;2890;2891;2892;2893;2894;2895;2896;2897;2898 2893 33 ADVLDLHEAGGEDFAMDEDGDESIHK Acetyl (Protein N-term);Oxidation (M) 2872.1981 0.19812664 3327 Q9Y5S9;Q9Y5S9-2 RBM8A RNA-binding protein 8A yes no 1 0 1 0 By MS/MS By MS/MS 1 0 4 2 2 64.31 64.184 3;4 1.5441E-23 19796 20211116_3428_TMUAki_TMT10x_P_F1 49.638 46.54 16348000 27257000 271040 26168000 19955000 36454000 16508000 18563000 18918000 26988000 20932000 15223000 25429000 1500100 26927000 19053000 36101000 17000000 20029000 19212000 26010000 20130000 7 7 4 7 7 7 7 7 7 7 7 9797700 15289000 244820 15093000 11213000 26512000 10139000 10289000 10916000 15601000 11931000 9123400 14265000 935400 15582000 10731000 25940000 10365000 11439000 11107000 15018000 11478000 4 4 2 4 4 4 4 4 4 4 4 6550600 11968000 26215 11075000 8742100 9942200 6369100 8274700 8002300 11386000 9001200 6099200 11164000 564700 11344000 8322100 10161000 6635100 8590500 8104900 10992000 8652200 3 3 2 3 3 3 3 3 3 3 3 6202600000 3645600000 2557000000 437 3327 414 2385;2386;2387;2388 2899;2900;2901;2902;2903;2904;2905 2899 3284 7 ADVQSIIGLQR Unmodified 1198.667 0.66698555 1615 Q13263;Q13263-2 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 57.142 57.353 2 1.0162E-08 16812 20211116_3445_TMUAki_TMT10x_S_F6 157.75 109.79 21897000 34666000 114490 44139000 23007000 24410000 20383000 25005000 25036000 23549000 28557000 20388000 32383000 1850300 44065000 21995000 26097000 20957000 25350000 25391000 23060000 27438000 4 4 1 4 4 4 4 4 4 4 4 5627000 8954800 0 11356000 8989100 11122000 7250700 5904100 6115100 5357900 7073200 5239200 8364800 501510 11412000 8574700 11228000 7410400 6249900 6304700 5255300 6793600 1 1 0 1 1 1 1 1 1 1 1 16270000 25712000 114490 32783000 14018000 13287000 13132000 19101000 18921000 18192000 21483000 15149000 24018000 1348800 32653000 13421000 14870000 13546000 19100000 19086000 17804000 20645000 3 3 1 3 3 3 3 3 3 3 3 1535100000 715460000 819640000 438 1615 415 2389;2390;2391;2392;2393;2394 2906;2907;2908;2909;2910;2911 2909 6 ADWLSHYWMPK Oxidation (M) 1448.6547 0.6547063 554 P08243;P08243-2;P08243-3 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes no 0 0 1 0 By MS/MS By matching 2 0 2 1 1 66.967 66.703 3 0.0002308 22401 20211116_3429_TMUAki_TMT10x_P_F2 85.958 73.002 2318400 3936700 77968 3802100 4532600 5937900 5165600 2222900 2292500 2452200 3499600 2159300 3672900 295890 3920300 4366700 5833900 5117700 2454400 2500800 2385500 3338600 1 1 1 1 1 1 1 1 1 1 1 2318400 3936700 77968 3802100 4532600 5937900 5165600 2222900 2292500 2452200 3499600 2159300 3672900 295890 3920300 4366700 5833900 5117700 2454400 2500800 2385500 3338600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517240000 360780000 156460000 439 554 416 2395;2396 2912 2912 513 1 ADWWTNTAHYNR Unmodified 1533.6749 0.67492447 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 By MS/MS 7 0 1 1 45.555 46.089 3 0.0010659 13767 20211116_3435_TMUAki_TMT10x_P_F7 70.438 52.126 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 440 1997 417 2397 2913 2913 1 ADYSTVPPPSSGSAGGGGGGGGGGGVNDAFK Acetyl (Protein N-term) 2678.1845 0.1844659 2408;2407 Q96AE4-2;Q96AE4 FUBP1 Far upstream element-binding protein 1 no no 1 0 0 0 By MS/MS By MS/MS 3.25 0.433 3 1 1 3 58.898 58.728 3 1.839E-15 19627 20211116_3430_TMUAki_TMT10x_P_F3 91.66 87.589 3389100 5607200 45907 6522200 4408800 5781000 3679100 4410000 4252500 4130000 4644000 3156000 5235500 338050 6578000 4211800 5904200 3787800 4544500 4315000 4045100 4467800 5 5 5 5 5 5 5 5 5 5 5 1661300 2777500 26307 3151500 2734800 4396000 2410900 2359400 2258900 2170700 2512800 1547000 2593100 177280 3207300 2615700 4355800 2457700 2496000 2313700 2127800 2416100 3 3 3 3 3 3 3 3 3 3 3 1727900 2829700 19599 3370700 1674000 1385000 1268200 2050600 1993600 1959200 2131300 1609000 2642400 160770 3370700 1596100 1548400 1330100 2048600 2001300 1917200 2051700 2 2 2 2 2 2 2 2 2 2 2 1282600000 648390000 634170000 441 2408;2407 418 2398;2399;2400;2401 2914;2915;2916;2917;2918;2919;2920 2916 7 AEAALEEESR Unmodified 1103.5095 0.50948185 2393 Q969G3;Q969G3-6;Q969G3-5;Q969G3-3;Q969G3-2;Q969G3-4 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 0 0 0 0 By MS/MS 1 0 1 1 33.28 33.29 2 0.064591 9276 20211116_3439_TMUAki_TMT10x_S_F1 52.6 28.75 200450 371910 2742.5 469770 169480 143630 201410 412420 557370 226710 412790 186660 347400 18741 467450 163470 172480 213650 400190 546330 229070 402680 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 200450 371910 2742.5 469770 169480 143630 201410 412420 557370 226710 412790 186660 347400 18741 467450 163470 172480 213650 400190 546330 229070 402680 1 1 1 1 1 1 1 1 1 1 1 10583000 0 10583000 442 2393 419 2402 2921 2921 1 AEAALLLLPEAAAER Acetyl (Protein N-term) 1578.8617 0.86172219 2504 Q96JB2;Q96JB2-2 COG3 Conserved oligomeric Golgi complex subunit 3 yes no 1 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 82.33 82.311 2 1.1291E-23 28683 20211116_3429_TMUAki_TMT10x_P_F2 128.08 102.86 5029000 7936800 88976 8728700 5606400 6808800 5751400 4446800 4697700 4935400 6468600 4683000 7408900 479800 8820000 5382900 7001700 5793700 4655000 4888100 4800100 6185200 7 7 4 7 7 7 7 7 7 7 7 2499700 3886900 32390 4310100 2452200 4091600 2569400 2166900 2259700 2440000 3301500 2327600 3628400 227050 4363800 2355600 4138400 2590500 2308400 2349400 2371700 3152500 3 3 1 3 3 3 3 3 3 3 3 2529400 4050000 56585 4418600 3154100 2717200 3182000 2279900 2438000 2495500 3167200 2355400 3780400 252750 4456200 3027300 2863300 3203200 2346600 2538700 2428300 3032700 4 4 3 4 4 4 4 4 4 4 4 1098400000 563710000 534730000 443 2504 420 2403;2404;2405;2406;2407;2408 2922;2923;2924;2925;2926;2927;2928 2923 7 AEACFVNCVER Unmodified 1353.5806 0.58055508 256 O60220 TIMM8A Mitochondrial import inner membrane translocase subunit Tim8 A yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 43.33 43.242 2 8.709E-11 13101 20211116_3430_TMUAki_TMT10x_P_F3 160.61 143.52 2137400 3252400 0 4180700 3003100 2496300 1910500 2693500 2507100 2195000 2926700 1989900 3038300 151810 4174200 2849600 2651400 2013500 2713700 2539300 2164300 2810300 3 3 0 3 3 3 3 3 3 3 3 737530 1028200 0 1414800 1874400 1568900 925940 857690 746320 736150 923330 686610 960840 63982 1418300 1772600 1572800 983250 904290 773390 723970 885230 1 1 0 1 1 1 1 1 1 1 1 1399900 2224300 0 2765900 1128600 927450 984610 1835800 1760800 1458800 2003300 1303300 2077500 87829 2755900 1077000 1078600 1030300 1809400 1765900 1440300 1925000 2 2 0 2 2 2 2 2 2 2 2 183440000 77016000 106420000 444 256 421 2409;2410;2411 2929;2930;2931 2929 3 AEADKNDK Unmodified 889.41412 0.4141249 553;544 P07900;P07900-2;P08238;Q58FF7 HSP90AA1;HSP90AB1;HSP90AB3P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 no no 0 0 0 1 By MS/MS 3 0 1 1 27.786 27.502 3 0.076238 8090 20211116_3441_TMUAki_TMT10x_S_F3 48.64 22.042 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 445 544;553 422 2412 2932 2932 1 AEAEAAAVHGAR Unmodified 1151.5683 0.56833414 1940 Q5T8P6;Q5T8P6-2;Q5T8P6-3;Q5T8P6-5;Q5T8P6-4 RBM26 RNA-binding protein 26 yes no 0 0 0 0 By MS/MS 2 0 1 1 27.148 26.911 3 0.014595 6352 20211116_3429_TMUAki_TMT10x_P_F2 55.261 29.702 86870 120150 995.32 114170 104970 150460 98426 69087 80795 93588 111150 80892 112090 8383.3 117440 100550 149210 99634 75083 84043 90393 106280 1 1 1 1 1 1 1 1 1 1 1 86870 120150 995.32 114170 104970 150460 98426 69087 80795 93588 111150 80892 112090 8383.3 117440 100550 149210 99634 75083 84043 90393 106280 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4533100 4533100 0 446 1940 423 2413 2933 2933 1 AEAERPEEQAEASGLKK Unmodified 1841.9119 0.91191986 1501 Q02952;Q02952-3;Q02952-2 AKAP12 A-kinase anchor protein 12 yes no 0 0 0 2 By matching By MS/MS 2.5 0.5 1 1 1 1 34.195 33.964 4 2.6217E-21 10574 20211116_3441_TMUAki_TMT10x_S_F3 166.57 149.49 297340 502640 11507 581240 357330 291540 342700 334530 426520 312790 481650 276940 469310 36216 583080 342950 315840 350980 337310 432200 306380 462920 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 297340 502640 11507 581240 357330 291540 342700 334530 426520 312790 481650 276940 469310 36216 583080 342950 315840 350980 337310 432200 306380 462920 1 1 1 1 1 1 1 1 1 1 1 57128000 19863000 37264000 447 1501 424 2414;2415 2934 2934 1 AEAGAGSATEFQFR Unmodified 1440.6634 0.66335673 1056 P46783;Q9NQ39 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like yes no 0 0 0 0 By MS/MS By MS/MS 3.09 0.793 3 4 4 5 6 45.331 45.324 2;3 3.2683E-60 14040 20211116_3430_TMUAki_TMT10x_P_F3 297.83 265.82 16904000 26761000 91473 31802000 27236000 29866000 18324000 26573000 27647000 21886000 26200000 15738000 24990000 1378900 32058000 25880000 30471000 19342000 27043000 27667000 21568000 25319000 14 14 5 14 14 14 14 14 14 14 14 8507300 13111000 73451 15732000 20207000 23748000 12367000 13889000 14415000 11612000 13427000 7920600 12244000 794040 15984000 19173000 23477000 13018000 14550000 14540000 11434000 12983000 6 6 3 6 6 6 6 6 6 6 6 8396900 13650000 18022 16070000 7028700 6118200 5957000 12684000 13231000 10275000 12773000 7817600 12746000 584870 16075000 6706500 6994200 6323700 12493000 13126000 10134000 12336000 8 8 2 8 8 8 8 8 8 8 8 2784700000 1653200000 1131500000 448 1056 425 2416;2417;2418;2419;2420;2421;2422;2423;2424;2425;2426 2935;2936;2937;2938;2939;2940;2941;2942;2943;2944;2945;2946;2947;2948;2949 2937 15 AEAGDNLGALVR Unmodified 1184.6149 0.61494998 1097 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 2 3 46.072 46.067 2 7.9911E-24 15499 20211116_3441_TMUAki_TMT10x_S_F3 240.15 179.47 9781200 14938000 0 19994000 16035000 13486000 9346600 12354000 13918000 9799700 13504000 9107000 13958000 860720 19943000 15204000 14114000 9971900 12541000 13945000 9676200 13040000 4 4 0 4 4 4 4 4 4 4 4 5076700 7390000 0 9797000 12565000 10401000 6197000 6870100 7667100 5586600 7310500 4726800 6904600 510480 9833600 11886000 10479000 6664300 7124800 7723000 5509000 7063200 2 2 0 2 2 2 2 2 2 2 2 4704500 7548100 0 10197000 3470100 3084900 3149700 5484000 6251300 4213200 6194000 4380100 7053000 350240 10109000 3317800 3635300 3307600 5416700 6221800 4167200 5976900 2 2 0 2 2 2 2 2 2 2 2 1996400000 1352400000 644010000 449 1097 426 2427;2428;2429;2430;2431 2950;2951;2952;2953;2954 2953 5 AEAGVPAEFSIWTR Unmodified 1532.7623 0.7623425 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 5.4 0.663 1 4 5 6 4 69.902 69.908 2;3 4.3198E-37 22548 20211116_3431_TMUAki_TMT10x_P_F4 244.45 209.22 35923000 57818000 77048 57016000 41572000 40786000 41535000 20477000 16327000 22851000 38447000 33447000 53948000 2973600 57980000 39854000 42095000 41352000 21916000 18498000 22220000 36404000 7 7 3 7 7 7 7 7 7 7 7 16137000 25793000 66828 25326000 18795000 25000000 20713000 9885400 8113400 11214000 18195000 15025000 24066000 1369100 25865000 18069000 25149000 20520000 10853000 9163000 10897000 17240000 4 4 2 4 4 4 4 4 4 4 4 19787000 32026000 10220 31690000 22777000 15786000 20822000 10592000 8213900 11637000 20252000 18423000 29882000 1604500 32115000 21785000 16946000 20833000 11062000 9335100 11323000 19164000 3 3 1 3 3 3 3 3 3 3 3 4321300000 2261400000 2059900000 450 755 427 2432;2433;2434;2435;2436;2437;2438;2439;2440;2441 2955;2956;2957;2958;2959;2960;2961;2962;2963;2964;2965;2966 2955 12 AEAVESAQAGDKCDFTGTLIVVPDVSK Unmodified 2806.3695 0.36948948 1716 Q14566 MCM6 DNA replication licensing factor MCM6 yes yes 0 0 0 1 By MS/MS By MS/MS 5.71 1.03 1 2 2 2 4 3 70.533 70.636 4 8.5997E-42 21907 20211116_3434_TMUAki_TMT10x_P_F6 186.28 168.94 32992000 60038000 404150 52733000 39714000 57856000 41351000 41951000 39947000 41668000 46660000 30721000 55994000 3054400 54389000 38135000 58266000 41815000 43447000 40939000 40707000 44804000 12 12 8 12 12 12 12 12 12 12 12 16124000 28566000 301290 24905000 17456000 36546000 21439000 20762000 19466000 20736000 21834000 15015000 26642000 1636200 25840000 16856000 36158000 21477000 21905000 19973000 20253000 20989000 6 6 6 6 6 6 6 6 6 6 6 16868000 31472000 102860 27828000 22258000 21310000 19912000 21189000 20481000 20932000 24826000 15706000 29353000 1418200 28549000 21279000 22108000 20338000 21542000 20965000 20454000 23814000 6 6 2 6 6 6 6 6 6 6 6 10342000000 5403000000 4938600000 451 1716 428 2442;2443;2444;2445;2446;2447;2448 2967;2968;2969;2970;2971;2972;2973;2974;2975;2976;2977;2978 2970 12 AECLAMLGRYPEAQSVASDILR Oxidation (M) 2465.2043 0.20427883 2590 Q99615;Q99615-2 DNAJC7 DnaJ homolog subfamily C member 7 yes no 0 0 1 1 By MS/MS 7 0 1 1 68.644 68.953 3 5.6389E-12 23622 20211116_3446_TMUAki_TMT10x_S_F7 107.03 97.276 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 452 2590 429 2449 2979 2979 2823 1 AECRPAASENYMR Oxidation (M) 1569.6664 0.66640998 662 P13984 GTF2F2 General transcription factor IIF subunit 2 yes yes 0 0 1 1 By MS/MS 3 0 1 1 26.52 26.227 3 0.034465 7611 20211116_3441_TMUAki_TMT10x_S_F3 47.532 14.123 26950 55794 0 52712 41169 29714 34441 24984 26319 25418 43436 25093 52050 0 53649 39305 31583 35035 25654 27738 24807 41372 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26950 55794 0 52712 41169 29714 34441 24984 26319 25418 43436 25093 52050 0 53649 39305 31583 35035 25654 27738 24807 41372 1 1 0 1 1 1 1 1 1 1 1 2509900 0 2509900 453 662 430 2450 2980 2980 724 1 AEDAVEAIR Unmodified 972.48762 0.4876242 2707 Q9BWF3;Q9BWF3-3;Q9BWF3-4;Q9BWF3-2;Q9BQ04 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 0 0 0 0 By MS/MS 2 0 1 1 37.766 37.527 2 0.0007293 10524 20211116_3429_TMUAki_TMT10x_P_F2 113.66 52.976 1122900 1747800 0 1871900 2351500 2137200 1439600 1184400 1302700 1045300 1508000 1045500 1631300 107920 1904800 2231700 2139500 1503700 1248200 1338500 1026700 1448300 1 1 0 1 1 1 1 1 1 1 1 1122900 1747800 0 1871900 2351500 2137200 1439600 1184400 1302700 1045300 1508000 1045500 1631300 107920 1904800 2231700 2139500 1503700 1248200 1338500 1026700 1448300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33639000 33639000 0 454 2707 431 2451 2981 2981 1 AEDGATPSPSNETPK Unmodified 1499.674 0.673981 857 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 32.693 32.459 3 1.0466E-14 10002 20211116_3441_TMUAki_TMT10x_S_F3 154.72 128.6 465540 767450 9684.5 807370 787000 825680 619460 544410 637320 922550 713180 433540 716260 52124 821100 750990 833700 637650 579030 650270 885430 685630 2 2 2 2 2 2 2 2 2 2 2 246540 391900 9435.2 438030 589550 637580 400020 309720 378700 543580 391180 229630 365850 34038 446590 561100 629840 415000 338450 386640 521250 376970 1 1 1 1 1 1 1 1 1 1 1 219000 375550 249.32 369340 197450 188100 219440 234690 258620 378970 322000 203910 350410 18087 374510 189890 203850 222650 240580 263630 364180 308660 1 1 1 1 1 1 1 1 1 1 1 67105000 39312000 27793000 455 857 432 2452;2453 2982;2983 2983 2 AEDGSVIDYELIDQDAR Unmodified 1907.8749 0.87486565 537 P07355;P07355-2 ANXA2 Annexin A2 yes no 0 0 0 0 By MS/MS 1 0 1 1 64.505 64.505 3 4.089E-10 19941 20211116_3428_TMUAki_TMT10x_P_F1 113.29 102.43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 456 537 433 2454 2984 2984 1 AEDNADTLALVFEAPNQEK Unmodified 2073.9855 0.98547873 635 P12004 PCNA Proliferating cell nuclear antigen yes yes 0 0 0 0 By MS/MS By MS/MS 2.72 1.17 6 5 11 5 2 15 14 74.422 74.349 2;3;4 8.5428E-103 27454 20211116_3441_TMUAki_TMT10x_S_F3 338.48 312.12 139480000 229910000 1655200 215770000 128670000 184730000 155470000 101640000 107000000 114450000 154640000 129880000 214480000 11403000 220650000 124110000 188240000 154790000 107910000 112660000 111250000 147710000 38 38 23 38 38 38 38 38 38 38 38 71320000 110950000 552110 105200000 56887000 107010000 69627000 48749000 52347000 55601000 73866000 66407000 103510000 4954500 107750000 54873000 107590000 69425000 52710000 54774000 54021000 70589000 18 18 11 18 18 18 18 18 18 18 18 68159000 118960000 1103100 110570000 71788000 77728000 85838000 52887000 54648000 58851000 80779000 63469000 110970000 6449000 112900000 69235000 80652000 85369000 55204000 57887000 57231000 77116000 20 20 12 20 20 20 20 20 20 20 20 50199000000 26983000000 23215000000 457 635 434 2455;2456;2457;2458;2459;2460;2461;2462;2463;2464;2465;2466;2467;2468;2469;2470;2471;2472;2473;2474;2475;2476;2477;2478;2479;2480;2481;2482;2483 2985;2986;2987;2988;2989;2990;2991;2992;2993;2994;2995;2996;2997;2998;2999;3000;3001;3002;3003;3004;3005;3006;3007;3008;3009;3010;3011;3012;3013;3014;3015;3016;3017;3018;3019;3020;3021;3022;3023;3024;3025;3026 3017 42 AEDNFEDIITKPPVRK Unmodified 1870.9789 0.97887721 3350 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 yes yes 0 0 0 2 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 53.349 53.488 4 1.3537E-35 14863 20211116_3434_TMUAki_TMT10x_P_F6 211.9 203.3 15032000 25091000 95342 29652000 22120000 24493000 15887000 20031000 20660000 19134000 22122000 13996000 23430000 1371300 29851000 21055000 25170000 16588000 20565000 20861000 18724000 21295000 5 5 2 5 5 5 5 5 5 5 5 7523200 12447000 48445 14659000 16662000 19039000 11494000 10008000 10186000 9751100 11018000 7004800 11622000 753260 14864000 15847000 18922000 11889000 10623000 10449000 9534000 10603000 3 3 1 3 3 3 3 3 3 3 3 7508800 12644000 46897 14993000 5457700 5454700 4392100 10024000 10475000 9382700 11103000 6991600 11807000 618000 14987000 5207800 6247900 4699100 9941600 10412000 9190100 10692000 2 2 1 2 2 2 2 2 2 2 2 1724000000 1054500000 669480000 458 3350 435 2484;2485;2486 3027;3028;3029;3030;3031 3029 5 AEEDAGK Unmodified 718.31335 0.31334823 3371 yes yes 0 0 0 0 By MS/MS 3 0 1 1 27.352 27.068 2 0.073539 7946 20211116_3441_TMUAki_TMT10x_S_F3 60.39 35.391 + 138840 281990 0 256560 131670 164160 101760 90661 87278 110300 160710 129260 263030 9645.8 262140 125390 171280 104340 96475 92029 106920 152760 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 138840 281990 0 256560 131670 164160 101760 90661 87278 110300 160710 129260 263030 9645.8 262140 125390 171280 104340 96475 92029 106920 152760 1 1 0 1 1 1 1 1 1 1 1 3845700 0 3845700 459 3371 436 2487 3032 3032 1 AEEDEILNR Unmodified 1087.5146 0.51456723 834 P27824;P27824-2;P27824-3 CANX Calnexin yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 37.501 37.458 2 0.0021003 10940 20211116_3439_TMUAki_TMT10x_S_F1 89.542 64.452 1046000 1663900 15993 1830000 2209200 1590400 1144900 1647600 1783900 1339500 1812500 973950 1553200 103190 1851500 2091600 1636300 1236800 1663100 1787800 1320900 1747600 2 2 1 2 2 2 2 2 2 2 2 394390 647370 0 681730 1563900 1158600 633910 601820 675900 528480 685400 367100 604190 34348 700180 1475200 1138400 692930 637790 686110 519160 660880 1 1 0 1 1 1 1 1 1 1 1 651630 1016500 15993 1148200 645310 431800 511010 1045800 1108000 810990 1127100 606850 948990 68841 1151400 616340 497880 543840 1025300 1101700 801730 1086700 1 1 1 1 1 1 1 1 1 1 1 55874000 32671000 23203000 460 834 437 2488;2489 3033;3034 3034 2 AEEGIAAGGVMDVNTALQEVLK Acetyl (Protein N-term);Oxidation (M) 2272.1257 0.12567738 801 P25398 RPS12 40S ribosomal protein S12 yes yes 1 0 1 0 By MS/MS By MS/MS 2.18 0.873 8 20 7 4 19 20 54.812 54.759 2;3 3.0746E-83 28918 20211116_3430_TMUAki_TMT10x_P_F3 190.1 173.07 68317000 115390000 1523600 97279000 73145000 121360000 80380000 88239000 97209000 92597000 93908000 63616000 107600000 6139300 100880000 70366000 121400000 81675000 91517000 98040000 90255000 90692000 46 46 19 46 46 46 46 46 46 46 46 39448000 65612000 1409200 53339000 33510000 83003000 40741000 52655000 57986000 54033000 52452000 36736000 61177000 3931100 55725000 32361000 82047000 41481000 55109000 58040000 52715000 50770000 15 15 7 15 15 15 15 15 15 15 15 28870000 49780000 114390 43940000 39636000 38352000 39639000 35584000 39223000 38564000 41456000 26881000 46428000 2208200 45155000 38005000 39353000 40194000 36408000 40000000 37541000 39922000 31 31 12 31 31 31 31 31 31 31 31 42622000000 26635000000 15987000000 461 801 438 2490;2491;2492;2493;2494;2495;2496;2497;2498;2499;2500;2501;2502;2503;2504;2505;2506;2507;2508;2509;2510;2511;2512;2513;2514;2515;2516;2517;2518;2519;2520;2521;2522;2523;2524;2525;2526;2527;2528 3035;3036;3037;3038;3039;3040;3041;3042;3043;3044;3045;3046;3047;3048;3049;3050;3051;3052;3053;3054;3055;3056;3057;3058;3059;3060;3061;3062;3063;3064;3065;3066;3067;3068;3069;3070;3071;3072;3073;3074;3075;3076;3077;3078;3079;3080;3081;3082;3083 3047 949 49 AEEGIAAGGVMDVNTALQEVLK Acetyl (Protein N-term) 2256.1308 0.13076276 801 P25398 RPS12 40S ribosomal protein S12 yes yes 1 0 0 0 By MS/MS By MS/MS 1.92 1.06 12 6 4 3 8 17 74.781 74.76 2;3 1.6552E-181 30386 20211116_3441_TMUAki_TMT10x_S_F3 278.46 261.09 64565000 101000000 499990 104740000 67049000 64445000 74719000 27009000 21074000 33752000 65748000 60118000 94260000 4869500 105980000 64491000 67296000 73729000 29552000 25372000 32686000 62042000 33 33 18 33 33 33 33 33 33 33 33 32765000 50512000 360180 54005000 29291000 41298000 37870000 13981000 9584400 17100000 33262000 30510000 47146000 2312000 54657000 28319000 42241000 37089000 15687000 11828000 16572000 31354000 12 12 7 12 12 12 12 12 12 12 12 31800000 50490000 139810 50730000 37759000 23147000 36850000 13028000 11489000 16652000 32486000 29608000 47114000 2557400 51324000 36172000 25055000 36641000 13865000 13543000 16113000 30688000 21 21 11 21 21 21 21 21 21 21 21 13669000000 6777800000 6890900000 462 801 438 2529;2530;2531;2532;2533;2534;2535;2536;2537;2538;2539;2540;2541;2542;2543;2544;2545;2546;2547;2548;2549;2550;2551;2552;2553 3084;3085;3086;3087;3088;3089;3090;3091;3092;3093;3094;3095;3096;3097;3098;3099;3100;3101;3102;3103;3104;3105;3106;3107;3108;3109;3110;3111;3112;3113;3114;3115;3116;3117;3118;3119 3116 36 AEEILEK Unmodified 830.43855 0.43854874 1383 P62913;P62913-2 RPL11 60S ribosomal protein L11 yes no 0 0 0 0 By MS/MS 3 0 1 1 46.133 45.788 2 0.005438 15461 20211116_3441_TMUAki_TMT10x_S_F3 108.46 37.548 1744300 3150800 45985 3137900 1703500 1379400 1815900 1875900 1793200 1725300 2448200 1624500 2940000 186900 3175800 1639000 1524800 1835300 1877700 1848500 1691200 2341400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1744300 3150800 45985 3137900 1703500 1379400 1815900 1875900 1793200 1725300 2448200 1624500 2940000 186900 3175800 1639000 1524800 1835300 1877700 1848500 1691200 2341400 1 1 1 1 1 1 1 1 1 1 1 82650000 0 82650000 463 1383 439 2554 3120 3120 1 AEEQPQVELFVK Acetyl (Protein N-term) 1457.7402 0.74021007 80 O00299 CLIC1 Chloride intracellular channel protein 1 yes yes 1 0 0 0 By MS/MS By MS/MS 2.38 1 3 4 4 2 7 6 74.996 74.898 2;3 4.5249E-06 25618 20211116_3429_TMUAki_TMT10x_P_F2 96.331 77.716 28199000 47060000 298340 41461000 32730000 47175000 35863000 35110000 34464000 34454000 37664000 26257000 43891000 2536900 42778000 31470000 47435000 36170000 36286000 35236000 33676000 36234000 12 12 6 12 12 12 12 12 12 12 12 15583000 24983000 175880 21854000 15550000 31361000 19473000 19485000 19031000 18961000 20489000 14510000 23300000 1397000 22658000 15016000 31095000 19534000 20395000 19432000 18540000 19720000 6 6 3 6 6 6 6 6 6 6 6 12616000 22077000 122460 19607000 17179000 15814000 16389000 15624000 15434000 15492000 17174000 11747000 20591000 1139900 20120000 16454000 16340000 16636000 15891000 15805000 15136000 16514000 6 6 3 6 6 6 6 6 6 6 6 7228900000 4254600000 2974400000 464 80 440 2555;2556;2557;2558;2559;2560;2561;2562;2563;2564;2565;2566;2567 3121;3122;3123;3124;3125;3126;3127;3128;3129;3130;3131;3132;3133;3134;3135 3123 15 AEERAELSEGQVR Unmodified 1472.7219 0.72193424 578 P09493-4 TPM1 Tropomyosin alpha-1 chain no no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 29.556 29.506 3 1.5414E-11 7735 20211116_3439_TMUAki_TMT10x_S_F1 144.27 120.52 278290 506350 7640.3 467820 433770 509500 352320 277770 288240 262660 387230 259170 472340 32370 480590 414340 511260 359650 293660 299550 257150 370490 3 3 3 3 3 3 3 3 3 3 3 192440 355080 7513.5 331270 338330 416750 236860 207900 213490 190920 273350 179240 331240 25000 340910 322310 414590 244830 221410 220340 187160 261840 2 2 2 2 2 2 2 2 2 2 2 85848 151270 126.82 136540 95446 92748 115470 69866 74750 71739 113880 79934 141100 7370 139680 92029 96673 114810 72246 79215 69987 108650 1 1 1 1 1 1 1 1 1 1 1 20584000 15501000 5083100 465 578 441 2568;2569;2570 3136;3137;3138 3138 3 AEEVATFFAK Unmodified 1111.555 0.55497548 624 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.6 1.02 2 2 4 2 5 5 66.775 66.931 2;3 4.9622E-10 20779 20211116_3445_TMUAki_TMT10x_S_F6 195.7 154.51 70318000 112630000 741500 120840000 89000000 115840000 74931000 100430000 93869000 93051000 96367000 65477000 105120000 6588000 122620000 85015000 117980000 77327000 102670000 94755000 91183000 92884000 8 8 6 8 8 8 8 8 8 8 8 33692000 51807000 302220 55804000 53978000 80707000 42481000 47833000 45540000 44255000 44261000 31373000 48357000 3288400 57020000 51481000 79944000 43786000 50185000 46150000 43370000 42736000 4 4 3 4 4 4 4 4 4 4 4 36625000 60820000 439280 65034000 35022000 35137000 32449000 52600000 48329000 48796000 52106000 34104000 56767000 3299600 65601000 33535000 38032000 33541000 52485000 48605000 47813000 50148000 4 4 3 4 4 4 4 4 4 4 4 5059300000 3023700000 2035600000 466 624 442 2571;2572;2573;2574;2575;2576;2577;2578;2579;2580 3139;3140;3141;3142;3143;3144;3145;3146;3147;3148;3149 3145 11 AEEYEFLTPVEEAPK Unmodified 1750.8301 0.83014729 1179 P52565 ARHGDIA Rho GDP-dissociation inhibitor 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.56 1.17 8 7 9 7 1 14 18 66.57 66.423 2;3;4 2.0805E-51 21420 20211116_3440_TMUAki_TMT10x_S_F2 288.35 259.45 180700000 305400000 969670 299340000 205250000 270500000 201380000 204950000 194210000 202690000 227530000 168240000 284940000 14335000 305380000 196640000 275880000 204250000 211620000 199070000 198050000 218460000 38 38 18 38 38 38 38 38 38 38 38 99761000 165080000 566300 160340000 114950000 190340000 122980000 110420000 103150000 109920000 123090000 92882000 154020000 7804100 164360000 110380000 190260000 123710000 116290000 106510000 107370000 118120000 17 17 7 17 17 17 17 17 17 17 17 80939000 140310000 403370 139010000 90300000 80162000 78403000 94527000 91055000 92774000 104450000 75359000 130920000 6530400 141020000 86264000 85616000 80541000 95331000 92555000 90680000 100340000 21 21 11 21 21 21 21 21 21 21 21 56266000000 31631000000 24636000000 467 1179 443 2581;2582;2583;2584;2585;2586;2587;2588;2589;2590;2591;2592;2593;2594;2595;2596;2597;2598;2599;2600;2601;2602;2603;2604;2605;2606;2607;2608;2609;2610;2611;2612 3150;3151;3152;3153;3154;3155;3156;3157;3158;3159;3160;3161;3162;3163;3164;3165;3166;3167;3168;3169;3170;3171;3172;3173;3174;3175;3176;3177;3178;3179;3180;3181;3182;3183;3184;3185;3186;3187;3188;3189;3190;3191;3192 3176 43 AEFEVHEVYAVDVLVSSGEGK Unmodified 2263.1008 0.10084284 3217 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 97.636 97.636 3 7.3611E-05 33056 20211116_3428_TMUAki_TMT10x_P_F1 65.784 50.694 285100 449760 4196.1 405860 248710 510620 317780 274940 287080 321160 322750 265440 419510 21252 418710 240090 508420 317780 292820 294670 311760 310240 4 4 2 4 4 4 4 4 4 4 4 285100 449760 4196.1 405860 248710 510620 317780 274940 287080 321160 322750 265440 419510 21252 418710 240090 508420 317780 292820 294670 311760 310240 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1398600 1398600 0 468 3217 444 2613;2614 3193;3194;3195;3196;3197 3195 5 AEFFADVVPAVR Unmodified 1319.6874 0.68738664 3126 Q9UHY7 ENOPH1 Enolase-phosphatase E1 yes yes 0 0 0 0 By MS/MS 6 0 1 1 72.264 72.208 2 0.0030673 22569 20211116_3434_TMUAki_TMT10x_P_F6 70.441 38.31 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 469 3126 445 2615 3198 3198 1 AEFGDFDIK Unmodified 1040.4815 0.48147619 2146 Q8IWS0;Q8IWS0-5;Q8IWS0-3;Q8IWS0-2;Q8IWS0-4 PHF6 PHD finger protein 6 yes no 0 0 0 0 By MS/MS By MS/MS 3.4 0.49 3 2 3 2 63.716 63.416 2 3.0421E-05 21592 20211116_3430_TMUAki_TMT10x_P_F3 131.44 77.031 8812100 15398000 77325 16765000 9257800 9352800 8327700 15243000 15673000 13559000 13609000 8205500 14373000 808890 16896000 8858100 10118000 8723200 15150000 15550000 13312000 13192000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8812100 15398000 77325 16765000 9257800 9352800 8327700 15243000 15673000 13559000 13609000 8205500 14373000 808890 16896000 8858100 10118000 8723200 15150000 15550000 13312000 13192000 2 2 2 2 2 2 2 2 2 2 2 993900000 0 993900000 470 2146 446 2616;2617;2618;2619;2620 3199;3200;3201;3202;3203 3199 5 AEFTSPPSLFK Unmodified 1222.6234 0.6233894 2019 Q6UN15;Q6UN15-3;Q6UN15-4;Q6UN15-5 FIP1L1 Pre-mRNA 3'-end-processing factor FIP1 yes no 0 0 0 0 By MS/MS 8 0 1 1 65.059 65.005 2 9.6996E-07 19714 20211116_3447_TMUAki_TMT10x_S_F8 135.86 98.131 3426400 6343100 128200 6569500 4404400 3504000 3823900 4349100 4280700 4187400 5120700 3191300 5919700 417250 6640200 4216400 3777700 3923200 4374300 4364700 4096300 4913800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3426400 6343100 128200 6569500 4404400 3504000 3823900 4349100 4280700 4187400 5120700 3191300 5919700 417250 6640200 4216400 3777700 3923200 4374300 4364700 4096300 4913800 1 1 1 1 1 1 1 1 1 1 1 362970000 0 362970000 471 2019 447 2621 3204 3204 1 AEFTVETR Unmodified 951.46616 0.46616048 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 2.67 1.11 1 2 1 2 1 5 36.584 36.604 2 0.0017212 8577 20211116_3440_TMUAki_TMT10x_S_F2 118.32 76.432 1160400 1703200 0 1846900 1008500 1048500 1103000 1218000 1183800 1049400 1509200 1080400 1589800 83086 1862100 968630 1121200 1116300 1224800 1212300 1031900 1445800 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1160400 1703200 0 1846900 1008500 1048500 1103000 1218000 1183800 1049400 1509200 1080400 1589800 83086 1862100 968630 1121200 1116300 1224800 1212300 1031900 1445800 2 2 0 2 2 2 2 2 2 2 2 58055000 0 58055000 472 755 448 2622;2623;2624;2625;2626;2627 3205;3206;3207;3208;3209;3210 3207 6 AEFVEVTK Unmodified 921.48075 0.48074791 38 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS 3.71 1.03 1 2 2 2 4 3 48.415 48.413 2 0.00041592 14080 20211116_3442_TMUAki_TMT10x_S_F4 143.01 74.589 + 37925000 49078000 247990 48800000 67946000 57465000 52308000 94142000 89537000 71626000 61993000 35313000 45794000 3720000 49934000 64767000 58831000 55028000 93192000 88482000 70882000 60655000 7 7 5 7 7 7 7 7 7 7 7 22677000 27784000 126120 27513000 45526000 46923000 38888000 54073000 56658000 40788000 36040000 21115000 25924000 2317600 28377000 43493000 46766000 40343000 54219000 56131000 40383000 35405000 4 4 3 4 4 4 4 4 4 4 4 15248000 21294000 121870 21287000 22420000 10542000 13420000 40069000 32879000 30838000 25952000 14198000 19869000 1402400 21556000 21273000 12066000 14685000 38973000 32351000 30498000 25250000 3 3 2 3 3 3 3 3 3 3 3 3493000000 2141600000 1351400000 473 38 449 2628;2629;2630;2631;2632;2633;2634 3211;3212;3213;3214;3215;3216;3217 3216 7 AEGDVAALNRR Unmodified 1170.6105 0.6105333 1413 P67936 TPM4 Tropomyosin alpha-4 chain yes yes 0 0 0 1 By MS/MS 3 0 1 1 30.551 30.294 3 0.0002345 9188 20211116_3441_TMUAki_TMT10x_S_F3 91.752 66.876 + 190160 285480 759.68 301260 200120 197340 210620 176670 180540 159950 259070 177060 266440 16613 304660 192200 206980 212160 180170 187770 156900 247490 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 190160 285480 759.68 301260 200120 197340 210620 176670 180540 159950 259070 177060 266440 16613 304660 192200 206980 212160 180170 187770 156900 247490 1 1 1 1 1 1 1 1 1 1 1 20582000 0 20582000 474 1413 450 2635 3218 3218 1 AEGFVDALHR Unmodified 1113.5567 0.55670682 2494 Q96I24 FUBP3 Far upstream element-binding protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 42.424 42.429 3 2.4744E-05 12742 20211116_3430_TMUAki_TMT10x_P_F3 99.788 69.224 381350 624140 15159 700520 350870 356780 324790 582990 601850 503580 591450 355190 582680 45317 704110 336700 389750 339380 578950 599790 495090 570880 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 381350 624140 15159 700520 350870 356780 324790 582990 601850 503580 591450 355190 582680 45317 704110 336700 389750 339380 578950 599790 495090 570880 1 1 1 1 1 1 1 1 1 1 1 196170000 0 196170000 475 2494 451 2636;2637;2638;2639;2640 3219;3220;3221 3219 3 AEGLDCSYTVLFGK Unmodified 1558.7337 0.73374448 1981 Q6NS38;Q6NS38-2 ALKBH2 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 yes no 0 0 0 0 By MS/MS 6 0 1 1 74.484 74.422 3 3.2576E-10 23848 20211116_3445_TMUAki_TMT10x_S_F6 121.28 107.62 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 476 1981 452 2641 3222 3222 1 AEGPEEARGHPPGQDDGGGDHEPVPSLR Acetyl (Protein N-term) 2904.3023 0.30228963 3088 Q9UBU6 FAM8A1 Protein FAM8A1 yes yes 1 0 0 1 By MS/MS 1 0 1 1 33.327 33.327 4 1.4136E-12 7334 20211116_3428_TMUAki_TMT10x_P_F1 56.914 48.828 34730 50715 0 62006 81235 88343 47170 48708 43323 30868 50068 32328 47364 2385 62852 76961 87483 49508 50990 44482 30882 48090 1 1 0 1 1 1 1 1 1 1 1 34730 50715 0 62006 81235 88343 47170 48708 43323 30868 50068 32328 47364 2385 62852 76961 87483 49508 50990 44482 30882 48090 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19178000 19178000 0 477 3088 453 2642 3223 3223 1 AEGPEVDVNLPK Unmodified 1266.6456 0.6455814 1555 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS 3 0 1 1 52.093 51.967 3 0.000917 16843 20211116_3430_TMUAki_TMT10x_P_F3 72.846 57.981 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 478 1555 454 2643 3224 3224 1 AEGSDVANAVLDGADCIMLSGETAK Oxidation (M) 2509.1312 0.13123305 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 1 0 By MS/MS By MS/MS 2.68 1.13 3 6 5 4 1 10 9 75.236 75.156 2;3;4 7.4559E-48 26349 20211116_3430_TMUAki_TMT10x_P_F3 203.78 190.66 86198000 146830000 973960 130310000 87239000 146180000 108320000 98782000 104310000 113070000 114720000 80263000 136950000 7138700 134350000 84211000 146880000 108650000 103250000 106670000 109840000 110350000 33 33 20 33 33 33 33 33 33 33 33 43758000 74911000 564330 65935000 41891000 88110000 51535000 49208000 52835000 57504000 58255000 40745000 69867000 3611300 68230000 40427000 87518000 51810000 52243000 53886000 55820000 56028000 16 16 9 16 16 16 16 16 16 16 16 42440000 71919000 409630 64379000 45348000 58074000 56787000 49574000 51478000 55567000 56469000 39517000 67080000 3527400 66115000 43784000 59360000 56839000 51011000 52780000 54023000 54319000 17 17 11 17 17 17 17 17 17 17 17 24033000000 14280000000 9752900000 479 670;671 455 2644;2645;2646;2647;2648;2649;2650;2651;2652;2653;2654;2655;2656;2657;2658;2659;2660;2661;2662 3225;3226;3227;3228;3229;3230;3231;3232;3233;3234;3235;3236;3237;3238;3239;3240;3241;3242;3243;3244;3245;3246;3247;3248;3249;3250;3251;3252;3253;3254;3255;3256;3257;3258 3236 733 34 AEGSDVANAVLDGADCIMLSGETAK Unmodified 2493.1363 0.13631842 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 By MS/MS By MS/MS 2.69 1.21 3 5 3 4 1 7 9 71.24 71.199 3;4 2.4066E-48 27416 20211116_3429_TMUAki_TMT10x_P_F2 199.94 176.61 83427000 134610000 1078600 142510000 78759000 87061000 103840000 38138000 32787000 48528000 86963000 77682000 125630000 6741500 143990000 76179000 91013000 101820000 41556000 38387000 46967000 82213000 19 19 10 19 19 19 19 19 19 19 19 36956000 56544000 493370 59973000 32535000 45327000 42627000 17120000 13911000 21307000 37075000 34410000 52774000 3100300 60721000 31456000 46445000 41822000 18956000 16230000 20637000 35048000 8 8 4 8 8 8 8 8 8 8 8 46471000 78064000 585230 82533000 46224000 41735000 61217000 21018000 18876000 27220000 49888000 43272000 72859000 3641200 83272000 44723000 44568000 60000000 22600000 22157000 26329000 47165000 11 11 6 11 11 11 11 11 11 11 11 27755000000 12465000000 15291000000 480 670;671 455 2663;2664;2665;2666;2667;2668;2669;2670;2671;2672;2673;2674;2675;2676;2677;2678 3259;3260;3261;3262;3263;3264;3265;3266;3267;3268;3269;3270;3271;3272;3273;3274;3275;3276;3277 3259 19 AEGSDVANAVLDGADCIMLSGETAKGDYPLEAVR Oxidation (M) 3509.629 0.629028 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 1 1 By MS/MS By MS/MS 3.43 1.09 1 3 7 6 4 11 10 70.955 70.908 3;4;5 8.7648E-31 28106 20211116_3441_TMUAki_TMT10x_S_F3 149.67 147.91 112900000 193290000 748140 156670000 139450000 198510000 134190000 146790000 150160000 159750000 147500000 105120000 180220000 6899400 163040000 133540000 198490000 136880000 152250000 151970000 155480000 142370000 31 31 14 31 31 31 31 31 31 31 31 60776000 104150000 555540 83799000 52881000 126020000 64210000 74734000 79287000 83242000 78599000 56591000 97103000 3103300 87557000 51008000 124620000 65005000 78827000 79976000 80948000 75843000 18 18 7 18 18 18 18 18 18 18 18 52122000 89142000 192610 72871000 86565000 72491000 69981000 72059000 70877000 76507000 68899000 48524000 83118000 3796100 75484000 82532000 73863000 71880000 73420000 71996000 74537000 66526000 13 13 7 13 13 13 13 13 13 13 13 96101000000 52896000000 43205000000 481 670;671 456 2679;2680;2681;2682;2683;2684;2685;2686;2687;2688;2689;2690;2691;2692;2693;2694;2695;2696;2697;2698;2699 3278;3279;3280;3281;3282;3283;3284;3285;3286;3287;3288;3289;3290;3291;3292;3293;3294;3295;3296;3297;3298;3299;3300;3301;3302;3303;3304;3305;3306;3307;3308 3302 733 31 AEGSDVANAVLDGADCIMLSGETAKGDYPLEAVR Unmodified 3493.6341 0.63411338 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 1 By MS/MS By MS/MS 3 1.21 2 5 6 3 3 10 9 79.193 79.165 3;4;5 5.7851E-61 27407 20211116_3429_TMUAki_TMT10x_P_F2 216.29 207.15 87014000 159510000 551170 155050000 100880000 93646000 108970000 41673000 31499000 49948000 91899000 81021000 148820000 4908400 157580000 96948000 98020000 107710000 45240000 37578000 48441000 86782000 20 20 8 20 20 20 20 20 20 20 20 47219000 83851000 164430 80548000 42985000 61162000 56983000 23831000 17223000 25336000 49537000 43966000 78230000 2526700 82116000 41572000 62664000 55837000 26158000 20408000 24683000 46786000 11 11 4 11 11 11 11 11 11 11 11 39795000 75657000 386740 74504000 57892000 32485000 51986000 17842000 14276000 24612000 42362000 37055000 70591000 2381700 75459000 55377000 35356000 51873000 19082000 17170000 23758000 39995000 9 9 4 9 9 9 9 9 9 9 9 56463000000 26224000000 30239000000 482 670;671 456 2700;2701;2702;2703;2704;2705;2706;2707;2708;2709;2710;2711;2712;2713;2714;2715;2716;2717;2718 3309;3310;3311;3312;3313;3314;3315;3316;3317;3318;3319;3320;3321;3322;3323;3324;3325;3326;3327 3310 19 AEGYAEGDLTLYHR Unmodified 1593.7423 0.74233534 2164 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 43.783 43.741 3 9.5985E-38 13307 20211116_3430_TMUAki_TMT10x_P_F3 249.75 216.07 7758200 13182000 114490 14483000 13165000 12133000 9037900 10264000 10245000 8458900 11436000 7223800 12305000 737880 14648000 12521000 12463000 9420700 10476000 10412000 8335800 10995000 8 8 4 8 8 8 8 8 8 8 8 4181900 6777900 88947 7903600 9591000 9458300 5777800 5310700 5630500 4562900 6138200 3894000 6328700 454380 8006700 9102500 9446400 6055500 5586400 5752500 4487200 5905600 4 4 2 4 4 4 4 4 4 4 4 3576300 6404500 25538 6579700 3574100 2674500 3260100 4953300 4614200 3896000 5297400 3329800 5976700 283500 6641600 3418300 3016700 3365200 4889500 4659100 3848600 5089000 4 4 2 4 4 4 4 4 4 4 4 1464800000 886520000 578230000 483 2164 457 2719;2720;2721;2722;2723;2724 3328;3329;3330;3331;3332;3333;3334;3335 3330 8 AEGYEVAHGGR Unmodified 1144.5261 0.52613497 1197 P53041 PPP5C Serine/threonine-protein phosphatase 5 yes yes 0 0 0 0 By matching By MS/MS 2.5 0.5 1 1 1 1 26.96 26.697 3 0.058882 7916 20211116_3441_TMUAki_TMT10x_S_F3 38.58 18.251 44537 69744 0 73441 60690 47088 52464 50270 45104 49294 71210 41450 65092 1659.8 74267 57839 49667 53419 50921 47134 48184 67885 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 44537 69744 0 73441 60690 47088 52464 50270 45104 49294 71210 41450 65092 1659.8 74267 57839 49667 53419 50921 47134 48184 67885 1 1 0 1 1 1 1 1 1 1 1 2942400 1215200 1727200 484 1197 458 2725;2726 3336 3336 1 AEHDQLLLNYAK Unmodified 1413.7252 0.72522871 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 47.576 47.731 3 8.1349E-05 13433 20211116_3431_TMUAki_TMT10x_P_F4 95.094 70.712 5954100 9340300 59775 11806000 10131000 10608000 7222800 8757700 8769800 6951600 8481800 5544300 8724700 607840 11852000 9644700 10839000 7526400 8943500 8843800 6863700 8191000 2 2 2 2 2 2 2 2 2 2 2 3339900 5079200 3294.3 6699600 7635400 8722700 5137000 5127200 5247500 4135500 4883700 3109800 4745500 340140 6750500 7258600 8680500 5344800 5364700 5320700 4079800 4722300 1 1 1 1 1 1 1 1 1 1 1 2614100 4261200 56481 5106700 2495700 1884900 2085800 3630500 3522200 2816100 3598100 2434400 3979300 267710 5101800 2386100 2158200 2181600 3578800 3523100 2783900 3468600 1 1 1 1 1 1 1 1 1 1 1 551360000 409400000 141960000 485 748 459 2727;2728 3337;3338 3337 2 AEIIADK Unmodified 758.41742 0.41741937 1601 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 40.951 40.934 2 0.0041413 11102 20211116_3442_TMUAki_TMT10x_S_F4 114.93 8.985 9510500 15383000 57773 14833000 9533200 7942700 11249000 6308000 7100800 6714500 10742000 8855600 14352000 842640 15068000 9187500 8479700 11192000 6508200 7534600 6541000 10250000 4 4 4 4 4 4 4 4 4 4 4 661150 958860 599.28 888690 819740 968890 672850 446450 520030 527920 671080 615600 894450 57593 912760 782350 970350 685450 482720 541090 512230 642690 1 1 1 1 1 1 1 1 1 1 1 8849300 14425000 57174 13944000 8713500 6973800 10576000 5861500 6580700 6186600 10071000 8240000 13458000 785050 14155000 8405200 7509400 10507000 6025500 6993500 6028800 9607400 3 3 3 3 3 3 3 3 3 3 3 398670000 95038000 303630000 486 1601 460 2729;2730;2731;2732 3339;3340;3341;3342;3343 3342 5 AEIITVSDGR Unmodified 1059.556 0.55603812 2634 Q9BRG1 VPS25 Vacuolar protein-sorting-associated protein 25 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 41.057 40.932 2 2.7531E-11 13574 20211116_3441_TMUAki_TMT10x_S_F3 213.53 165.36 1542200 2575600 34451 2767200 1693800 1769500 1617400 1287300 1333800 1236400 1983200 1436200 2404000 162090 2794600 1624300 1853400 1635800 1331600 1392400 1209700 1893000 2 2 2 2 2 2 2 2 2 2 2 535590 810420 6343.2 836920 719270 805150 494610 391810 400650 379210 555700 498740 756300 52888 851450 684410 812900 510550 418850 417210 370870 531260 1 1 1 1 1 1 1 1 1 1 1 1006600 1765200 28108 1930300 974570 964380 1122700 895450 933140 857240 1427500 937480 1647700 109200 1943100 939890 1040500 1125200 912770 975150 838800 1361700 1 1 1 1 1 1 1 1 1 1 1 81932000 27003000 54929000 487 2634 461 2733;2734 3344;3345 3345 2 AEISFEDRK Unmodified 1093.5404 0.54038805 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 1 By MS/MS By MS/MS 3.5 1.12 1 1 1 1 1 3 37.165 37.174 3 9.2106E-05 11963 20211116_3441_TMUAki_TMT10x_S_F3 136.84 86.717 7553500 10436000 66426 12572000 7697300 7229700 7126200 4941600 4948200 5216100 7682600 7033500 9746000 683360 12595000 7369700 7643300 7190800 5148000 5226200 5083000 7326500 6 6 5 6 6 6 6 6 6 6 6 3667800 4786500 19788 5744100 4162300 4185600 2807900 1968600 2165800 2232600 3429500 3415200 4469900 329450 5769000 3958200 4310300 2899100 2121300 2276200 2169600 3269200 1 1 1 1 1 1 1 1 1 1 1 3885700 5649600 46639 6828300 3535000 3044100 4318300 2973000 2782400 2983500 4253100 3618200 5276100 353900 6826100 3411600 3333000 4291700 3026700 2950000 2913400 4057200 5 5 4 5 5 5 5 5 5 5 5 345970000 210700000 135270000 488 755 462 2735;2736;2737;2738 3346;3347;3348;3349;3350;3351 3349 6 AEISNAIDQYVTGTIGEDEDLIK Unmodified 2493.2122 0.21224378 892 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 80.393 80.375 3 4.261E-11 26448 20211116_3428_TMUAki_TMT10x_P_F1 106.43 91.345 5567500 8603600 133610 8128700 5993800 7576400 6710400 4564400 4515500 5185800 6565300 5184900 8026300 592070 8317900 5773200 7684700 6701200 4811300 4762500 5039100 6269800 2 2 2 2 2 2 2 2 2 2 2 2947800 4680600 63260 3976800 2972200 4678500 3225600 2028300 2203300 2591700 3196000 2745100 4364900 303690 4117200 2860100 4663300 3226900 2212900 2321500 2507900 3052400 1 1 1 1 1 1 1 1 1 1 1 2619700 3923000 70348 4151800 3021500 2897800 3484800 2536000 2312200 2594100 3369200 2439700 3661400 288380 4200600 2913100 3021300 3474300 2598400 2441100 2531200 3217500 1 1 1 1 1 1 1 1 1 1 1 2257300000 1526700000 730630000 489 892 463 2739;2740 3352;3353 3352 2 AEITLVATKPEK Unmodified 1298.7446 0.74456717 3077 Q9UBF2;Q9UBF2-2 COPG2 Coatomer subunit gamma-2 yes no 0 0 0 1 By MS/MS 6 0 1 1 48.286 48.443 3 4.7503E-13 13166 20211116_3445_TMUAki_TMT10x_S_F6 144.27 110.48 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 490 3077 464 2741 3354 3354 1 AEKDEPGAWEETFK Unmodified 1635.7417 0.74166663 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 1 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 52.481 52.624 3 0.00042994 15432 20211116_3431_TMUAki_TMT10x_P_F4 80.488 69.048 8638000 13884000 37556 18873000 14980000 11215000 10338000 4862200 5511200 6181500 10649000 8043000 12974000 827970 18786000 14248000 11755000 10580000 5303700 6000200 5982900 10114000 2 2 1 2 2 2 2 2 2 2 2 4892900 7619800 37556 10049000 12719000 9414200 8059000 2626900 3089300 3391100 5950600 4556000 7119200 550260 10071000 12081000 9477200 8264400 3036200 3461800 3280500 5651700 1 1 1 1 1 1 1 1 1 1 1 3745100 6264000 0 8823400 2260600 1800900 2279500 2235400 2421900 2790400 4698700 3487000 5854600 277700 8715600 2167200 2277600 2315600 2267500 2538400 2702400 4462100 1 1 0 1 1 1 1 1 1 1 1 806700000 447910000 358790000 491 1730 465 2742;2743;2744 3355;3356 3355 2 AEKTEVLSEDLLQIER Unmodified 1871.984 0.98402217 1965 Q68EM7;Q68EM7-2;Q68EM7-6;Q68EM7-5;Q68EM7-4 ARHGAP17 Rho GTPase-activating protein 17 yes no 0 0 0 1 By MS/MS 2 0 1 1 65.903 65.592 3 0.0086305 21976 20211116_3429_TMUAki_TMT10x_P_F2 58.123 42.181 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 492 1965 466 2745 3357 3357 1 AELDDTPMR Unmodified 1046.4703 0.47025958 777 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 36.295 36.394 2 3.2753E-05 10390 20211116_3429_TMUAki_TMT10x_P_F2 128.12 110.14 325210 546680 1469.9 636070 298440 217750 364400 228230 229740 207320 416840 302810 510450 27957 636330 287910 247870 362010 230890 246260 203340 396320 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 325210 546680 1469.9 636070 298440 217750 364400 228230 229740 207320 416840 302810 510450 27957 636330 287910 247870 362010 230890 246260 203340 396320 1 1 1 1 1 1 1 1 1 1 1 24855000 0 24855000 493 777 467 2746;2747 3358;3359 3358 2 AELEIQK Unmodified 829.45453 0.45453316 541 P07741;P07741-2 APRT Adenine phosphoribosyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 43.128 43.343 2 0.010793 12063 20211116_3442_TMUAki_TMT10x_S_F4 97.798 30.766 2650400 3947900 182.45 5064700 2113000 2255400 2429700 3300900 3154500 2785700 3386600 2467700 3688000 212380 5046000 2034000 2494400 2470400 3287900 3185700 2741900 3259700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2650400 3947900 182.45 5064700 2113000 2255400 2429700 3300900 3154500 2785700 3386600 2467700 3688000 212380 5046000 2034000 2494400 2470400 3287900 3185700 2741900 3259700 1 1 1 1 1 1 1 1 1 1 1 83027000 0 83027000 494 541 468 2748;2749 3360;3361 3361 2 AELGTDLLSQLSLEDQK Unmodified 1858.9524 0.95238769 3219 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 78.71 78.698 3 0.1058 25317 20211116_3444_TMUAki_TMT10x_S_F5 20.575 7.1615 22026000 32496000 249370 30198000 19526000 12660000 22850000 5311800 5236800 6902000 18700000 20511000 30314000 2023500 30707000 18821000 13814000 22458000 5819200 6576000 6675300 17622000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22026000 32496000 249370 30198000 19526000 12660000 22850000 5311800 5236800 6902000 18700000 20511000 30314000 2023500 30707000 18821000 13814000 22458000 5819200 6576000 6675300 17622000 1 1 1 1 1 1 1 1 1 1 1 864540000 0 864540000 495 3219 469 2750;2751 3362 3362 1 AELGTDLLSQLSLEDQKR Unmodified 2015.0535 0.053498719 3219 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 1 By MS/MS 6 0 1 1 73.911 73.837 3 5.9012E-31 23614 20211116_3445_TMUAki_TMT10x_S_F6 178.52 142.88 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 496 3219 470 2752 3363 3363 1 AELLDNEKPAAVVAPITTGYTVK Unmodified 2399.2948 0.29479162 2855 Q9HB71;Q9HB71-3 CACYBP Calcyclin-binding protein yes no 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 68.096 68.286 4 0.0034773 22846 20211116_3435_TMUAki_TMT10x_P_F7 57.068 47.411 17234000 30338000 0 29515000 22766000 25658000 21730000 17372000 15677000 17356000 21179000 16045000 28305000 1260600 30110000 21787000 26191000 21908000 18080000 16408000 16951000 20261000 2 2 0 2 2 2 2 2 2 2 2 7854500 13899000 0 14616000 10283000 16435000 10317000 8840200 8499800 8921400 9914300 7312900 12972000 625200 14887000 9857000 16460000 10407000 9373800 8776800 8709800 9520200 1 1 0 1 1 1 1 1 1 1 1 9379800 16439000 0 14899000 12482000 9223200 11413000 8531600 7176800 8434200 11265000 8732100 15334000 635410 15224000 11930000 9730600 11501000 8706300 7631600 8241300 10740000 1 1 0 1 1 1 1 1 1 1 1 2587700000 1482600000 1105100000 497 2855 471 2753;2754;2755;2756 3364;3365 3364 2 AELLLPEADRPGPR Unmodified 1532.8311 0.83109076 158 O15069 NACAD NAC-alpha domain-containing protein 1 yes yes 0 0 0 1 By MS/MS 5 0 1 1 47.57 47.742 3 0.00017259 13745 20211116_3433_TMUAki_TMT10x_P_F5 85.163 71.483 1698100 2911900 32067 3647400 4762300 4631600 2598400 2690200 2466900 2105300 2624000 1581400 2719900 213590 3683700 4513900 4614100 2744700 2815700 2521000 2080200 2526400 1 1 1 1 1 1 1 1 1 1 1 1698100 2911900 32067 3647400 4762300 4631600 2598400 2690200 2466900 2105300 2624000 1581400 2719900 213590 3683700 4513900 4614100 2744700 2815700 2521000 2080200 2526400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 170590000 170590000 0 498 158 472 2757 3366 3366 1 AELNEFLTR Unmodified 1091.5611 0.56112349 783 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 0 By MS/MS By MS/MS 3.22 1.31 1 2 2 2 2 5 4 56.757 56.678 2 1.1462E-07 19826 20211116_3441_TMUAki_TMT10x_S_F3 209.21 158.51 63069000 100120000 503450 121050000 78595000 89117000 60412000 79782000 83249000 76364000 85079000 58725000 93497000 5686500 121530000 74919000 92546000 62936000 81486000 83757000 74721000 82016000 9 9 5 9 9 9 9 9 9 9 9 28229000 41956000 138710 51643000 53282000 62822000 36753000 33555000 36165000 32069000 35694000 26284000 39186000 2642300 52167000 50671000 62652000 38126000 35549000 36801000 31381000 34447000 4 4 2 4 4 4 4 4 4 4 4 34839000 58160000 364740 69402000 25313000 26295000 23659000 46227000 47084000 44295000 49385000 32441000 54312000 3044300 69363000 24248000 29894000 24810000 45937000 46957000 43340000 47568000 5 5 3 5 5 5 5 5 5 5 5 13816000000 7682900000 6133400000 499 783 473 2758;2759;2760;2761;2762;2763;2764;2765;2766 3367;3368;3369;3370;3371;3372;3373;3374;3375;3376 3374 10 AELNPWPEYIYTR Unmodified 1650.8042 0.80420731 819 P26639;P26639-2 TARS Threonine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 71.022 70.951 2 1.2643E-14 22054 20211116_3434_TMUAki_TMT10x_P_F6 172.74 144.01 6065000 10099000 93835 10202000 6336000 7731300 8230100 3603700 3550000 4666800 6841300 5647800 9423400 594070 10364000 6128500 7935800 8104200 3904100 3933100 4514100 6497700 2 2 2 2 2 2 2 2 2 2 2 2886100 4407100 17851 4440500 3143600 4538400 3822900 1824500 1748300 2079500 3084800 2687400 4112400 259520 4529200 3032300 4556400 3778000 1999600 1916800 2020400 2934400 1 1 1 1 1 1 1 1 1 1 1 3178900 5691400 75984 5761600 3192400 3193000 4407200 1779200 1801600 2587400 3756500 2960400 5311000 334560 5834500 3096200 3379500 4326200 1904500 2016200 2493700 3563300 1 1 1 1 1 1 1 1 1 1 1 518490000 208000000 310490000 500 819 474 2767;2768;2769 3377;3378;3379 3377 3 AELPPGPGAVGR Unmodified 1119.6037 0.60365701 3127;3128 Q9UI10;Q9UI10-2;Q9UI10-3 EIF2B4 Translation initiation factor eIF-2B subunit delta no no 0 0 0 0 By MS/MS 4 0 1 1 37.452 37.609 2 0.0002238 9765 20211116_3442_TMUAki_TMT10x_S_F4 94.909 20.978 364520 571010 18397 683720 340250 350240 398770 304310 357090 313530 462280 339550 533240 47028 684560 328840 376340 400140 312000 368840 305830 442690 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 364520 571010 18397 683720 340250 350240 398770 304310 357090 313530 462280 339550 533240 47028 684560 328840 376340 400140 312000 368840 305830 442690 1 1 1 1 1 1 1 1 1 1 1 12373000 0 12373000 501 3127;3128 475 2770 3380 3380 1 AELRDDPIISTHLAK Unmodified 1677.905 0.90498399 73 O00231;O00231-2 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 0 0 0 1 By MS/MS By matching 5.33 0.471 2 1 2 1 45.452 45.575 4 0.00091418 11616 20211116_3434_TMUAki_TMT10x_P_F6 73.834 57.149 3032700 4662500 10190 5327900 6495900 6728800 3704200 3931300 3955500 3217400 4183800 2823400 4353100 246210 5409300 6154900 6705600 3911100 4116900 4021100 3171700 4028800 2 2 1 2 2 2 2 2 2 2 2 3032700 4662500 10190 5327900 6495900 6728800 3704200 3931300 3955500 3217400 4183800 2823400 4353100 246210 5409300 6154900 6705600 3911100 4116900 4021100 3171700 4028800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 616560000 507150000 109410000 502 73 477 2771;2772;2773 3381;3382 3382 2 AELSEEALLSVLPTIR Acetyl (Protein N-term) 1781.9775 0.97748023 1036 P45974;P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 1 0 0 0 By MS/MS By MS/MS 2.45 1.37 4 2 2 2 1 4 7 83.871 83.862 2 6.7433E-48 28650 20211116_3442_TMUAki_TMT10x_S_F4 148.18 125.35 6453100 11327000 89049 10354000 7227200 11447000 9075500 7788900 8738700 7994100 9504800 6008300 10565000 531480 10648000 6975300 11512000 9098600 8110000 8932000 7799000 9145200 8 8 6 8 8 8 8 8 8 8 8 3540200 5802600 19344 5183200 3454800 7752000 4665800 4418400 5205300 4535600 5246600 3295900 5412200 252870 5369900 3340500 7663900 4686100 4664100 5273300 4424900 5059900 4 4 3 4 4 4 4 4 4 4 4 2912900 5524000 69705 5171100 3772400 3694600 4409700 3370600 3533400 3458500 4258200 2712400 5153200 278610 5278200 3634800 3847600 4412500 3445900 3658700 3374100 4085300 4 4 3 4 4 4 4 4 4 4 4 2348200000 1251400000 1096800000 503 1036 478 2774;2775;2776;2777;2778;2779;2780;2781;2782;2783;2784 3383;3384;3385;3386;3387;3388;3389;3390;3391;3392;3393 3392 11 AELSEEALLSVLPTIRVPK Acetyl (Protein N-term) 2106.1936 0.19362101 1036 P45974;P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 1 0 0 1 By MS/MS 6 0.816 1 1 1 3 81.535 81.551 3 0.0032261 26462 20211116_3444_TMUAki_TMT10x_S_F5 46.702 34.076 964690 1567300 57236 1474000 1227100 1089700 1138600 1034800 1019400 1081900 1341500 898650 1462100 137000 1504500 1177900 1132500 1155900 1056300 1053700 1054700 1284100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 964690 1567300 57236 1474000 1227100 1089700 1138600 1034800 1019400 1081900 1341500 898650 1462100 137000 1504500 1177900 1132500 1155900 1056300 1053700 1054700 1284100 1 1 1 1 1 1 1 1 1 1 1 302340000 0 302340000 504 1036 479 2785;2786;2787 3394 3394 1 AELYKEPTNEELNR Unmodified 1704.8319 0.83187862 2817 Q9H6R4;Q9H6R4-2;Q9H6R4-4;Q9H6R4-3 NOL6 Nucleolar protein 6 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 40.104 39.986 3 0.00031448 10392 20211116_3431_TMUAki_TMT10x_P_F4 81.594 62.519 2183600 3466900 18911 4791400 7020600 6339600 3375400 5189000 6159500 3394100 4234900 2033100 3239900 244280 4817600 6639700 6337000 3700600 5280200 6076100 3388800 4144800 3 3 2 3 3 3 3 3 3 3 3 1724100 2707800 12516 3780700 6633500 5971500 2989800 4384400 5169200 2835900 3389800 1605200 2530600 201240 3813900 6268200 5912600 3290700 4491500 5100200 2833500 3325100 2 2 1 2 2 2 2 2 2 2 2 459560 759100 6395 1010700 387110 368070 385590 804630 990330 558230 845060 427940 709260 43046 1003700 371530 424420 409920 788680 975880 555340 819700 1 1 1 1 1 1 1 1 1 1 1 159170000 131780000 27392000 505 2817 480 2788;2789 3395;3396;3397 3395 3 AENDVDNELLDYEDDEVETAAGGDGAEAPAKK Acetyl (Protein N-term) 3391.4699 0.46992763 1665 Q13838;Q13838-2 DDX39B Spliceosome RNA helicase DDX39B yes no 1 0 0 1 By MS/MS By MS/MS 1.33 0.667 7 1 1 4 5 75.548 75.482 3;4;5 1.6984E-26 24342 20211116_3428_TMUAki_TMT10x_P_F1 106.65 105.04 67893000 128080000 415750 110830000 81318000 113190000 86943000 79086000 83828000 87712000 96641000 63215000 119450000 4839200 114320000 78112000 114400000 87800000 82389000 85872000 85308000 92829000 17 17 13 17 17 17 17 17 17 17 17 35047000 60770000 202120 53170000 37220000 70848000 45165000 39812000 40275000 42853000 46708000 32631000 56677000 2735000 55043000 35875000 70387000 45246000 42135000 41415000 41727000 44858000 8 8 6 8 8 8 8 8 8 8 8 32846000 67310000 213630 57663000 44098000 42347000 41779000 39274000 43554000 44858000 49933000 30584000 62771000 2104200 59278000 42237000 44016000 42554000 40253000 44457000 43581000 47971000 9 9 7 9 9 9 9 9 9 9 9 44262000000 27040000000 17222000000 506 1665 481 2790;2791;2792;2793;2794;2795;2796;2797;2798 3398;3399;3400;3401;3402;3403;3404;3405;3406;3407;3408;3409;3410;3411;3412;3413;3414 3398 17 AENFFILR Unmodified 1008.5393 0.53926584 1269 P59998;P59998-3;P59998-2;P59998-4 ARPC4 Actin-related protein 2/3 complex subunit 4 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 64.101 64.414 2 0.002369 19453 20211116_3447_TMUAki_TMT10x_S_F8 110.41 51.812 27080000 47304000 418690 44047000 38654000 48490000 33147000 36165000 30105000 31352000 37362000 25218000 44127000 2797400 45232000 36950000 48847000 33816000 37248000 31017000 30819000 35817000 5 5 5 5 5 5 5 5 5 5 5 12823000 22514000 213620 21090000 21257000 33637000 17603000 17590000 14219000 14969000 17716000 11941000 21003000 1380400 21804000 20303000 33132000 17942000 18616000 14737000 14727000 16982000 2 2 2 2 2 2 2 2 2 2 2 14257000 24790000 205060 22957000 17397000 14853000 15544000 18575000 15886000 16384000 19646000 13276000 23125000 1417100 23428000 16647000 15715000 15874000 18632000 16280000 16091000 18835000 3 3 3 3 3 3 3 3 3 3 3 1782500000 1042100000 740470000 507 1269 482 2799;2800;2801;2802 3415;3416;3417;3418;3419 3418 5 AENGKLVINGNPITIFQER Unmodified 2112.1328 0.13275209 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 1 By MS/MS By MS/MS 6 2.92 1 1 2 2 2 65.996 66.117 3 3.2242E-12 20621 20211116_3436_TMUAki_TMT10x_P_F8 128.41 117.81 51166000 91854000 615630 72553000 57180000 83444000 69849000 60958000 61355000 64871000 68265000 47642000 85637000 4568800 75542000 55161000 83830000 69926000 63230000 63035000 63195000 65639000 11 11 7 11 11 11 11 11 11 11 11 15435000 26234000 149150 21878000 18380000 34836000 20779000 18277000 18687000 20288000 20537000 14372000 24463000 1441500 22821000 17691000 34317000 20887000 19479000 19168000 19732000 19754000 4 4 3 4 4 4 4 4 4 4 4 35731000 65620000 466480 50675000 38801000 48609000 49070000 42680000 42668000 44583000 47729000 33270000 61174000 3127300 52722000 37470000 49513000 49039000 43750000 43867000 43464000 45885000 7 7 4 7 7 7 7 7 7 7 7 5027700000 2456100000 2571600000 508 489 483 2803;2804;2805;2806 3420;3421;3422;3423;3424;3425;3426;3427;3428;3429;3430 3423 11 AENGKLVINGNPITIFQERDPSK Unmodified 2539.3395 0.3394504 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 2 By MS/MS By MS/MS 5.83 2.67 4 3 5 6 8 10 61.429 61.592 3;4;5 1.7932E-56 18760 20211116_3436_TMUAki_TMT10x_P_F8 226.56 200.14 313200000 541290000 3153200 425720000 413260000 588110000 397240000 407590000 385320000 381360000 403370000 291620000 504650000 27776000 444900000 395920000 585050000 403400000 422740000 393160000 373540000 388560000 28 28 17 28 28 28 28 28 28 28 28 210910000 358110000 2367200 285650000 278500000 478840000 289860000 273090000 259770000 255890000 267930000 196380000 333890000 18999000 299420000 267360000 471270000 292490000 287530000 265880000 250620000 258210000 15 15 11 15 15 15 15 15 15 15 15 102280000 183180000 785940 140070000 134760000 109270000 107380000 134500000 125550000 125470000 135440000 95239000 170770000 8776900 145480000 128560000 113780000 110910000 135210000 127280000 122910000 130350000 13 13 6 13 13 13 13 13 13 13 13 86843000000 48138000000 38705000000 509 489 484 2807;2808;2809;2810;2811;2812;2813;2814;2815;2816;2817;2818;2819;2820;2821;2822;2823;2824 3431;3432;3433;3434;3435;3436;3437;3438;3439;3440;3441;3442;3443;3444;3445;3446;3447;3448;3449;3450;3451;3452;3453;3454;3455;3456;3457;3458 3444 28 AENLGEVLRGDR Unmodified 1327.6844 0.68442653 2340 Q92544 TM9SF4 Transmembrane 9 superfamily member 4 yes yes 0 0 0 1 By MS/MS By MS/MS 3.75 0.829 2 1 1 2 2 42.678 42.684 3 5.3925E-07 12890 20211116_3430_TMUAki_TMT10x_P_F3 121.24 86.544 1897400 2766800 11365 3381600 3047900 2809200 1873000 2768500 2814600 2199300 2767100 1766700 2584000 184010 3397800 2893600 2896200 1990500 2799800 2820500 2171400 2670800 3 3 3 3 3 3 3 3 3 3 3 959660 1336100 10057 1601200 2362300 2163300 1328800 1303700 1372100 1097000 1313300 893620 1247700 108580 1623200 2239700 2149900 1403200 1362700 1391900 1079900 1268700 2 2 2 2 2 2 2 2 2 2 2 937700 1430700 1308.7 1780400 685580 645830 544260 1464800 1442500 1102300 1453900 873110 1336300 75431 1774600 653890 746320 587260 1437100 1428600 1091500 1402100 1 1 1 1 1 1 1 1 1 1 1 286470000 172430000 114040000 510 2340 485 2825;2826;2827;2828 3459;3460;3461 3459 3 AENNSEVGASGYGVPGPTWDR Unmodified 2161.9665 0.96647463 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 By MS/MS By MS/MS 3.44 0.831 1 4 3 1 4 5 52.474 52.423 2;3 9.7431E-181 15413 20211116_3431_TMUAki_TMT10x_P_F4 416.08 380.87 13522000 22350000 113470 27326000 20600000 26097000 17060000 21542000 22300000 18732000 20181000 12590000 20874000 1186800 27507000 19661000 26559000 17652000 22048000 22381000 18410000 19534000 13 13 5 13 13 13 13 13 13 13 13 8154200 13409000 23567 16199000 15854000 21166000 12326000 13405000 13767000 11413000 12554000 7591800 12522000 711650 16403000 15108000 21082000 12732000 13961000 13899000 11229000 12148000 9 9 2 9 9 9 9 9 9 9 9 5367500 8941000 89903 11127000 4746200 4931200 4734100 8137400 8532500 7318600 7627100 4998000 8351100 475150 11104000 4553100 5477800 4920200 8087200 8482000 7181500 7385600 4 4 3 4 4 4 4 4 4 4 4 3378100000 2165500000 1212600000 511 1546 486 2829;2830;2831;2832;2833;2834;2835;2836;2837 3462;3463;3464;3465;3466;3467;3468;3469;3470;3471;3472;3473;3474;3475 3470 14 AEPAIIPATR Unmodified 1037.5869 0.58694431 2688 Q9BVA0 KATNB1 Katanin p80 WD40 repeat-containing subunit B1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 38.708 38.889 2 0.084196 10475 20211116_3442_TMUAki_TMT10x_S_F4 48.602 36.395 310970 519990 19880 584630 340290 269130 322500 436900 455310 383830 525070 289690 485450 44720 587130 327050 297400 332170 434150 459860 377060 504360 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 310970 519990 19880 584630 340290 269130 322500 436900 455310 383830 525070 289690 485450 44720 587130 327050 297400 332170 434150 459860 377060 504360 1 1 1 1 1 1 1 1 1 1 1 13434000 0 13434000 512 2688 487 2838 3476 3476 1 AEPAKIEAFR Unmodified 1130.6084 0.60840804 473 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 1 By MS/MS By MS/MS 5 0.894 2 1 2 2 3 38.726 38.845 3 0.024152 10225 20211116_3431_TMUAki_TMT10x_P_F4 61.435 32.708 4706100 7206500 51562 8003900 8798500 7155500 5308600 6784700 6606200 5452700 6808200 4382100 6727400 483840 8096300 8351100 7333600 5607400 6877000 6671100 5380300 6561400 5 5 4 5 5 5 5 5 5 5 5 1990200 2880800 7772.1 3298700 5798200 4397000 2348700 2820600 2768600 2200100 2757100 1853100 2689700 225580 3352100 5473300 4376200 2575700 2928700 2797800 2174300 2660000 1 1 1 1 1 1 1 1 1 1 1 2715900 4325700 43790 4705200 3000400 2758600 2960000 3964100 3837700 3252600 4051100 2529000 4037700 258260 4744100 2877800 2957400 3031700 3948300 3873300 3206000 3901400 4 4 3 4 4 4 4 4 4 4 4 513850000 156960000 356900000 513 473 488 2839;2840;2841;2842;2843 3477;3478;3479;3480;3481;3482 3477 6 AEPASVAAESLAGSR Acetyl (Protein N-term) 1456.7158 0.71578623 2909 Q9NQT5-2;Q9NQT5 EXOSC3 Exosome complex component RRP40 yes no 1 0 0 0 By MS/MS 1.5 0.5 1 1 2 56.107 55.981 2 5.3581E-10 18030 20211116_3429_TMUAki_TMT10x_P_F2 103.43 90.055 4372300 6781900 59945 6509400 8001900 13865000 6521800 11677000 11031000 9470300 7877800 4071500 6327200 469200 6769900 7639000 13622000 6832300 11916000 10913000 9340100 7697100 2 2 2 2 2 2 2 2 2 2 2 4372300 6781900 59945 6509400 8001900 13865000 6521800 11677000 11031000 9470300 7877800 4071500 6327200 469200 6769900 7639000 13622000 6832300 11916000 10913000 9340100 7697100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 755530000 755530000 0 514 2909 489 2844;2845 3483;3484 3484 2 AEPDYIEDDNPELIRPQK Acetyl (Protein N-term) 2183.0382 0.038242585 2768 Q9H098 FAM107B Protein FAM107B yes yes 1 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 60.452 60.309 3 5.4205E-06 20247 20211116_3439_TMUAki_TMT10x_S_F1 102.08 92.028 12726000 20878000 208710 23534000 13471000 15890000 12343000 14038000 13534000 14644000 15798000 11851000 19491000 1231600 23707000 12899000 16618000 12616000 14384000 13797000 14278000 15170000 3 3 2 3 3 3 3 3 3 3 3 3723400 5796700 0 6066600 4580000 7571200 4594100 4220600 4030500 4636000 4652100 3466600 5409900 292210 6192400 4390000 7544900 4641800 4472700 4147100 4510600 4468500 1 1 0 1 1 1 1 1 1 1 1 9003000 15081000 208710 17468000 8890900 8319100 7749000 9817200 9503300 10009000 11146000 8384200 14082000 939350 17514000 8508900 9072900 7974200 9911600 9649500 9767000 10701000 2 2 2 2 2 2 2 2 2 2 2 1174800000 612010000 562750000 515 2768 490 2846;2847 3485;3486;3487 3486 3 AEPEAGEEQAGDDRDSGGPVLQFDYEAVANR Unmodified 3291.4552 0.45522104 1253 P56182 RRP1 Ribosomal RNA processing protein 1 homolog A yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 59.941 59.794 4 2.5514E-57 20039 20211116_3439_TMUAki_TMT10x_S_F1 212.27 202.48 4554400 7950200 70334 7730600 6053800 9427300 5857200 6871500 6098300 6225300 6334800 4241000 7417600 449930 7927400 5803000 9441800 5958900 7096100 6201800 6106600 6103600 3 3 2 3 3 3 3 3 3 3 3 3146600 5479400 70334 5476700 4318600 7790200 4452400 4921900 4238000 4605800 4430800 2930300 5112800 342840 5621900 4148500 7729000 4502600 5139600 4327700 4511300 4268300 2 2 2 2 2 2 2 2 2 2 2 1407800 2470800 0 2253900 1735200 1637100 1404800 1949600 1860200 1619500 1903900 1310700 2304700 107090 2305400 1654500 1712800 1456300 1956600 1874100 1595300 1835300 1 1 0 1 1 1 1 1 1 1 1 2348400000 1293200000 1055200000 516 1253 491 2848;2849 3488;3489;3490 3490 3 AEPEDHYFLLTEPPLNTPENR Unmodified 2481.1812 0.18121843 1296 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 2.86 1.12 1 2 1 3 4 3 63.283 63.044 3 2.068E-26 21397 20211116_3430_TMUAki_TMT10x_P_F3 166.57 155.3 23506000 37768000 304390 44610000 29353000 35338000 24323000 20357000 24192000 22187000 28705000 21889000 35267000 2284200 44887000 28035000 36235000 24931000 21508000 24777000 21593000 27551000 7 7 6 7 7 7 7 7 7 7 7 16777000 26115000 185450 30705000 23637000 29839000 19151000 14225000 16648000 15499000 19689000 15622000 24385000 1629600 30987000 22561000 30100000 19583000 15289000 17154000 15085000 18899000 5 5 4 5 5 5 5 5 5 5 5 6729500 11653000 118940 13905000 5716500 5499100 5171800 6131700 7543800 6687300 9016200 6266700 10882000 654590 13900000 5474800 6134800 5347900 6219000 7623000 6508300 8652000 2 2 2 2 2 2 2 2 2 2 2 2588800000 1569100000 1019700000 517 1296 492 2850;2851;2852;2853;2854;2855;2856 3491;3492;3493;3494;3495;3496;3497;3498;3499;3500 3495 10 AEPPKAPEQEQAAPGPAAGGEAPK Unmodified 2297.1288 0.12878893 1437 P80723 BASP1 Brain acid soluble protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.25 0.829 1 1 2 2 2 36.494 36.476 4 4.2484E-29 11583 20211116_3441_TMUAki_TMT10x_S_F3 166.89 142.29 1801300 2505000 3409.1 4670600 8583600 4518100 2635300 2713200 4696400 1747800 3699400 1676900 2345500 214120 4609500 8078900 4571600 3048000 2820800 4652200 1746800 3599500 5 5 2 5 5 5 5 5 5 5 5 1095000 1517100 1326.2 2946000 7945900 3991800 1996400 1682900 2967000 1100200 2350600 1019400 1421000 169260 2920100 7468200 3950200 2366100 1810200 2954000 1098500 2286600 2 2 1 2 2 2 2 2 2 2 2 706250 987860 2082.9 1724600 637760 526270 638980 1030300 1729500 647580 1348800 657490 924530 44864 1689400 610710 621370 681840 1010700 1698200 648230 1312900 3 3 1 3 3 3 3 3 3 3 3 768860000 634230000 134620000 518 1437 493 2857;2858;2859;2860 3501;3502;3503;3504;3505 3503 5 AEPPQAMNALMR 2 Oxidation (M) 1359.6275 0.62750527 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 2 0 By MS/MS By MS/MS 4.75 0.829 2 1 1 1 3 32.894 33.004 3 0.029659 7587 20211116_3431_TMUAki_TMT10x_P_F4 47.815 35.967 1202400 1911300 14141 2011000 1780300 1702200 1375000 1174700 1264100 1113700 1540500 1119600 1783800 113850 2039900 1697400 1741200 1412400 1219100 1300700 1090200 1477500 6 6 2 6 6 6 6 6 6 6 6 714270 1079300 4700.1 1151000 1285400 1273000 803270 728410 801420 658760 885890 665090 1007400 71596 1171000 1220600 1277100 839940 766000 818390 646250 851970 1 1 1 1 1 1 1 1 1 1 1 488120 831980 9441.2 859980 494980 429180 571690 446240 462720 454940 654620 454520 776430 42254 868900 476800 464180 572510 453100 482320 443960 625540 5 5 1 5 5 5 5 5 5 5 5 80802000 68607000 12195000 519 1576 494 2861;2862;2863;2864 3506 3506 2126;2127 1 AEPPQAMNALMR Unmodified 1327.6377 0.63767603 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 0 By MS/MS 6 0 1 1 49.238 49.337 2 0.00015592 13177 20211116_3434_TMUAki_TMT10x_P_F6 97.284 82.018 5622500 8905200 12755 10448000 14638000 12022000 7667800 6621200 6872800 5553300 7512300 5235200 8315300 604300 10573000 13861000 12029000 8117700 6972600 7049400 5467600 7227000 1 1 1 1 1 1 1 1 1 1 1 5622500 8905200 12755 10448000 14638000 12022000 7667800 6621200 6872800 5553300 7512300 5235200 8315300 604300 10573000 13861000 12029000 8117700 6972600 7049400 5467600 7227000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 316730000 316730000 0 520 1576 494 2865 3507 3507 1 AEPPQCTSLAWSADGQTLFAGYTDNLVR Unmodified 3067.4345 0.43454936 1405 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 5.89 0.737 3 4 2 4 5 79.448 79.455 3;4 7.1903E-34 25596 20211116_3445_TMUAki_TMT10x_S_F6 176.09 168.89 12822000 21942000 215610 19401000 16097000 16732000 16337000 14401000 13250000 14733000 15778000 11939000 20465000 1037000 19931000 15451000 17158000 16464000 14770000 13705000 14375000 15143000 9 9 4 9 9 9 9 9 9 9 9 3826500 5765200 33188 5070400 3385900 6134200 3882800 3110400 2990300 3326600 4001700 3562900 5376900 188000 5237600 3259800 6115600 3884900 3321500 3117100 3240000 3829000 4 4 1 4 4 4 4 4 4 4 4 8995100 16177000 182430 14330000 12712000 10598000 12455000 11291000 10260000 11406000 11777000 8376500 15088000 848980 14694000 12191000 11042000 12579000 11448000 10588000 11135000 11314000 5 5 3 5 5 5 5 5 5 5 5 9494700000 3756300000 5738400000 521 1405 495 2866;2867;2868;2869;2870;2871;2872;2873;2874 3508;3509;3510;3511;3512;3513;3514;3515;3516 3513 9 AEPSGAETRPPIR Acetyl (Protein N-term) 1421.7263 0.72629134 2932 Q9NRR5;Q9NRR5-2 UBQLN4 Ubiquilin-4 yes no 1 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 30.978 30.919 2 5.4539E-23 8286 20211116_3439_TMUAki_TMT10x_S_F1 189.18 174.24 242330 394870 3957 395930 416200 432670 315030 281830 297330 250580 375230 225660 368460 25548 404380 396730 435120 324290 293220 306020 246020 359560 3 3 2 3 3 3 3 3 3 3 3 209420 344510 3957 324190 388420 394080 274510 240140 245300 214010 325090 195020 321390 23557 333210 369810 393690 283500 251140 253660 210090 311140 2 2 2 2 2 2 2 2 2 2 2 32903 50366 0 71731 27784 38584 40520 41690 52028 36571 50137 30631 47077 1990.4 71173 26918 41421 40791 42077 52359 35928 48424 1 1 0 1 1 1 1 1 1 1 1 149520000 108580000 40936000 522 2932 496 2875;2876;2877 3517;3518;3519 3519 3 AEPTVCSFLTK Acetyl (Protein N-term) 1293.6275 0.6274885 2482 Q96H79;Q96H79-2 ZC3HAV1L Zinc finger CCCH-type antiviral protein 1-like yes no 1 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 75.442 75.376 2 1.7646E-05 25195 20211116_3442_TMUAki_TMT10x_S_F4 87.806 58.459 11036000 18301000 86641 17006000 11800000 15149000 12270000 10176000 9767600 11537000 12734000 10276000 17072000 950180 17412000 11328000 15435000 12344000 10638000 10152000 11211000 12192000 4 4 2 4 4 4 4 4 4 4 4 5720200 8938700 86641 8804100 5253600 9937700 6520100 5122300 5042800 5683300 6385000 5326700 8340300 548460 9008100 5074400 9945800 6501700 5467800 5242400 5527400 6117800 2 2 2 2 2 2 2 2 2 2 2 5316300 9362400 0 8201600 6546400 5210800 5749900 5054000 4724800 5853400 6348800 4949500 8731800 401720 8404200 6253300 5489400 5842200 5170400 4909100 5683800 6074200 2 2 0 2 2 2 2 2 2 2 2 997350000 647770000 349570000 523 2482 497 2878;2879;2880;2881;2882 3520;3521;3522;3523;3524;3525 3523 6 AEPVEVVAPR Unmodified 1065.5819 0.58185893 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 34.396 34.371 2 1.5938E-08 12306 20211116_3441_TMUAki_TMT10x_S_F3 172.23 136.94 7009900 11366000 70359 11815000 15649000 14193000 9056700 8932900 10246000 8187700 10239000 6527200 10607000 730640 12057000 14841000 14194000 9568100 9325600 10371000 8027200 9877500 7 7 4 7 7 7 7 7 7 7 7 5090000 8074100 41513 8428800 13619000 12413000 6813200 6947300 8091200 6182000 7526100 4739400 7535300 545450 8633300 12888000 12277000 7306400 7316500 8155400 6069200 7277600 4 4 2 4 4 4 4 4 4 4 4 1919900 3291600 28846 3386100 2029900 1780100 2243500 1985600 2155000 2005700 2713100 1787800 3071800 185190 3423700 1953400 1917200 2261800 2009100 2216000 1958000 2599900 3 3 2 3 3 3 3 3 3 3 3 1419900000 965960000 453970000 524 586 498 2883;2884;2885;2886 3526;3527;3528;3529;3530;3531;3532 3530 7 AEPYCSVLPGFTFIQHLPLSER Unmodified 2560.2784 0.27843005 2675 Q9BUJ2;Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2-3 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.2 2 1 1 2 4 2 78.666 78.658 3 1.1323E-44 25749 20211116_3428_TMUAki_TMT10x_P_F1 203.26 194.08 14164000 23147000 184650 22092000 16527000 21094000 16778000 13867000 12060000 13888000 17156000 13189000 21594000 1156200 22597000 15861000 21388000 16859000 14465000 12657000 13563000 16392000 6 6 3 6 6 6 6 6 6 6 6 7743500 11743000 102460 11374000 6846300 13986000 7913600 7754700 6736300 7749000 9046000 7210300 10956000 677790 11669000 6594500 13947000 7934900 8198700 6986500 7568300 8654900 3 3 2 3 3 3 3 3 3 3 3 6420100 11404000 82190 10718000 9680700 7108000 8863900 6112600 5324100 6139500 8109600 5978300 10638000 478380 10928000 9266700 7441400 8924200 6265900 5670100 5995000 7736800 3 3 1 3 3 3 3 3 3 3 3 9811800000 6570300000 3241500000 525 2675 499 2887;2888;2889;2890;2891;2892 3533;3534;3535;3536;3537;3538 3533 6 AEQDVENDLLDYDEEEEPQAPQESTPAPPKK Acetyl (Protein N-term) 3552.5904 0.59037711 63 O00148;O00148-2;O00148-3 DDX39A ATP-dependent RNA helicase DDX39A yes no 1 0 0 1 By MS/MS 1 0 1 1 70.983 70.983 3 5.1047E-06 22635 20211116_3428_TMUAki_TMT10x_P_F1 60.481 58.424 1289400 1889100 0 2094800 1107100 2205600 1487800 867410 1041200 997030 1362200 1200300 1763500 69056 2124200 1068800 2210000 1475500 953330 1090200 968410 1304200 1 1 0 1 1 1 1 1 1 1 1 1289400 1889100 0 2094800 1107100 2205600 1487800 867410 1041200 997030 1362200 1200300 1763500 69056 2124200 1068800 2210000 1475500 953330 1090200 968410 1304200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1489600000 1489600000 0 526 63 500 2893 3539 3539 1 AEQEPTAEQLAQIAAENEEDEHSVNYKPPAQK Acetyl (Protein N-term) 3605.6758 0.6757785 1179 P52565;P52565-2 ARHGDIA Rho GDP-dissociation inhibitor 1 yes no 1 0 0 1 By MS/MS By MS/MS 2.11 1.07 7 6 3 3 10 9 64.4 64.229 3;4;5 1.7307E-35 21727 20211116_3439_TMUAki_TMT10x_S_F1 154.49 150 87881000 149980000 826370 141260000 102620000 147620000 105280000 99564000 100940000 101040000 107160000 81828000 139910000 6460500 144820000 98477000 148920000 106520000 103700000 103100000 98624000 103180000 29 29 13 29 29 29 29 29 29 29 29 44038000 77378000 494140 72388000 47760000 98922000 59575000 51260000 53360000 54688000 50274000 41006000 72183000 2894100 74597000 46109000 98068000 59620000 54625000 54447000 53270000 48593000 15 15 6 15 15 15 15 15 15 15 15 43843000 72599000 332230 68869000 54856000 48701000 45706000 48304000 47585000 46356000 56883000 40822000 67729000 3566400 70219000 52368000 50848000 46898000 49074000 48657000 45354000 54585000 14 14 7 14 14 14 14 14 14 14 14 89751000000 48561000000 41190000000 527 1179 501 2894;2895;2896;2897;2898;2899;2900;2901;2902;2903;2904;2905;2906;2907;2908;2909;2910;2911;2912 3540;3541;3542;3543;3544;3545;3546;3547;3548;3549;3550;3551;3552;3553;3554;3555;3556;3557;3558;3559;3560;3561;3562;3563;3564;3565;3566;3567;3568 3556 29 AEQINQAAGEASAVLAK Unmodified 1669.8635 0.8635131 3148 Q9UJZ1;Q9UJZ1-2 STOML2 Stomatin-like protein 2, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 62.807 62.805 3 1.3862E-06 18679 20211116_3434_TMUAki_TMT10x_P_F6 91.475 71.897 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 528 3148 502 2913;2914 3569;3570 3569 2 AEQLFSSALCAAR Unmodified 1422.6925 0.69254837 2472 Q96GD0 PDXP Pyridoxal phosphate phosphatase yes yes 0 0 0 0 By MS/MS 8 0 1 1 64.044 64.215 2 4.3874E-12 19886 20211116_3436_TMUAki_TMT10x_P_F8 126.5 84.161 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 529 2472 503 2915 3571 3571 1 AEQVALSR Acetyl (Protein N-term) 914.48214 0.48214489 626 P11413;P11413-2 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 1 0 0 0 By MS/MS 3 0 1 1 33.804 33.782 2 0.0045451 9533 20211116_3430_TMUAki_TMT10x_P_F3 74.255 63.186 39494 63648 1885.9 69511 59536 72925 50230 42752 42602 38221 51975 36787 59413 5312.6 70549 56967 73402 51201 44854 44006 37515 49848 1 1 1 1 1 1 1 1 1 1 1 39494 63648 1885.9 69511 59536 72925 50230 42752 42602 38221 51975 36787 59413 5312.6 70549 56967 73402 51201 44854 44006 37515 49848 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1034300 1034300 0 530 626 504 2916 3572 3572 1 AERDSALETLQGQLEEK Unmodified 1915.9487 0.9486993 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 3 0 2 1 1 56.496 56.19 3 2.8656E-30 19615 20211116_3441_TMUAki_TMT10x_S_F3 172.56 149.42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 531 1741 505 2917;2918 3573;3574 3574 2 AERENADIIR Unmodified 1185.6102 0.61019895 2973;1941 Q9NVI7;Q9NVI7-2;Q9NVI7-3;Q5T9A4-2;Q5T9A4;Q5T9A4-3 ATAD3A;ATAD3B ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B no no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 28.509 28.462 3 0.05744 6999 20211116_3429_TMUAki_TMT10x_P_F2 43.781 21.453 629010 1017800 11956 796730 741330 1102700 719750 579350 622330 589930 740540 585760 948920 64865 832990 711000 1092800 728190 615770 641580 575720 710710 2 2 2 2 2 2 2 2 2 2 2 541000 882520 10293 671760 646710 1017400 616180 488690 513310 484180 625010 503800 822700 55926 705360 619950 1003200 623430 523410 530670 473060 599470 1 1 1 1 1 1 1 1 1 1 1 88006 135310 1662.7 124970 94614 85363 103570 90659 109030 105750 115530 81955 126220 8938.5 127630 91046 89524 104760 92360 110910 102660 111250 1 1 1 1 1 1 1 1 1 1 1 13117000 10499000 2617300 532 2973;1941 506 2919;2920;2921 3575;3576 3575 2 AERGELDLTGAK Acetyl (Protein N-term) 1300.6623 0.6622941 662 P13984 GTF2F2 General transcription factor IIF subunit 2 yes yes 1 0 0 1 By MS/MS 2.5 0.5 1 1 2 44.166 44.161 2 3.1426E-07 11882 20211116_3440_TMUAki_TMT10x_S_F2 63.624 34.881 844320 1333400 0 1724900 689650 629260 709870 1170200 1300000 961510 1275300 786120 1245600 64578 1715600 661570 720790 737270 1156200 1295800 947660 1231000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 844320 1333400 0 1724900 689650 629260 709870 1170200 1300000 961510 1275300 786120 1245600 64578 1715600 661570 720790 737270 1156200 1295800 947660 1231000 1 1 0 1 1 1 1 1 1 1 1 56612000 0 56612000 533 662 507 2922;2923 3577;3578 3577 2 AERPEDLNLPNAVITR Acetyl (Protein N-term) 1848.9694 0.96937516 2927 Q9NRF9 POLE3 DNA polymerase epsilon subunit 3 yes yes 1 0 0 1 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 56.66 56.374 2 3.3241E-69 18668 20211116_3430_TMUAki_TMT10x_P_F3 145.08 95.606 1930000 3380900 22855 3354400 2778600 4046300 2439600 2678900 2762900 2754000 2891800 1797200 3154600 192400 3434300 2657100 4048700 2502300 2794900 2801200 2686600 2785600 4 4 3 4 4 4 4 4 4 4 4 1528300 2546500 13753 2548000 2218800 3537000 2027200 2068300 2084100 2065500 2188100 1423100 2376200 148400 2614100 2123400 3509300 2068100 2177000 2121400 2017400 2107600 3 3 2 3 3 3 3 3 3 3 3 401760 834360 9101.5 806400 559840 509280 412350 610550 678820 688460 703660 374150 778440 44005 820190 533650 539430 434230 617990 679810 669180 678030 1 1 1 1 1 1 1 1 1 1 1 1831100000 1238100000 592970000 534 2927 508 2924;2925;2926 3579;3580;3581;3582 3581 4 AESDWDTVTVLR Acetyl (Protein N-term) 1432.6834 0.68342347 296 O60869;O60869-2;O60869-3 EDF1 Endothelial differentiation-related factor 1 yes no 1 0 0 0 By MS/MS 1 0 1 1 73.109 73 2 0.028894 25385 20211116_3439_TMUAki_TMT10x_S_F1 50.452 40.314 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 535 296 509 2927 3583 3583 1 AESDWDTVTVLRK Acetyl (Protein N-term) 1560.7784 0.77838649 296 O60869;O60869-2;O60869-3 EDF1 Endothelial differentiation-related factor 1 yes no 1 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 63.381 63.19 2 9.8659E-26 21493 20211116_3430_TMUAki_TMT10x_P_F3 167.67 144.93 12527000 20780000 70235 21544000 17778000 18862000 16185000 8543200 8329600 9288900 14147000 11664000 19393000 1118000 21885000 17007000 19149000 16257000 9229200 9024200 9041300 13467000 4 4 2 4 4 4 4 4 4 4 4 10525000 17344000 70235 18037000 15414000 16879000 14360000 6405300 6301900 7331600 11459000 9800300 16186000 958270 18334000 14754000 17032000 14371000 7068800 6946700 7122300 10894000 3 3 2 3 3 3 3 3 3 3 3 2001800 3436600 0 3507500 2364600 1982200 1825100 2137900 2027700 1957300 2688700 1863800 3207000 159730 3550400 2253000 2117000 1885700 2160400 2077400 1919100 2573200 1 1 0 1 1 1 1 1 1 1 1 2422000000 1341200000 1080800000 536 296 510 2928;2929;2930;2931 3584;3585;3586;3587 3584 4 AESSESFTMASSPAQR Acetyl (Protein N-term);Oxidation (M) 1742.7417 0.74174299 1114 P49736 MCM2 DNA replication licensing factor MCM2 yes yes 1 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 38.424 38.367 2 4.601E-29 11311 20211116_3439_TMUAki_TMT10x_S_F1 106.38 98.78 130860 242180 3747.9 295940 244920 251480 156620 239230 302650 230270 226740 121870 226180 15939 297440 232850 258660 168010 243580 298810 225260 221080 2 2 2 2 2 2 2 2 2 2 2 68376 119570 1202.9 130310 197110 198440 100220 110370 148900 109820 112400 63674 111610 8593 133200 186640 195980 108230 116640 148050 107280 109560 1 1 1 1 1 1 1 1 1 1 1 62480 122610 2544.9 165620 47807 53043 56410 128860 153750 120450 114340 58194 114570 7346.3 164240 46210 62685 59782 126940 150750 117980 111520 1 1 1 1 1 1 1 1 1 1 1 95325000 77178000 18147000 537 1114 512 2932;2933 3588;3589 3589 1475 2 AETEEAEEPEEDGEEHVCVSASK Unmodified 2560.0395 0.039500731 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS 1 0 2 2 38.166 38.08 3;4 1.4774E-36 11219 20211116_3439_TMUAki_TMT10x_S_F1 188.19 175.52 1162700 1744500 17949 3038700 539030 578200 767020 1154500 1671700 953440 1578000 1082700 1632700 93426 2971800 522950 753750 794100 1138700 1657700 939460 1525100 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1162700 1744500 17949 3038700 539030 578200 767020 1154500 1671700 953440 1578000 1082700 1632700 93426 2971800 522950 753750 794100 1138700 1657700 939460 1525100 3 3 2 3 3 3 3 3 3 3 3 97778000 0 97778000 538 1057 513 2934;2935 3590;3591;3592 3592 3 AETEEGPDVLR Unmodified 1214.5779 0.57789577 1808 Q15436;Q15436-2 SEC23A Protein transport protein Sec23A yes no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 35.572 35.671 2 5.9655E-12 8738 20211116_3428_TMUAki_TMT10x_P_F1 142.92 113.97 110580 185360 0 239040 103440 97807 122610 112030 126020 108000 166450 102950 173160 7358.3 237960 99553 108670 123470 113060 129490 105650 159320 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 110580 185360 0 239040 103440 97807 122610 112030 126020 108000 166450 102950 173160 7358.3 237960 99553 108670 123470 113060 129490 105650 159320 1 1 0 1 1 1 1 1 1 1 1 5898700 0 5898700 539 1808 514 2936;2937;2938 3593;3594;3595 3593 3 AETLEFNDVYQEVK Acetyl (Protein N-term) 1725.8097 0.8097462 1550 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 1 0 0 0 By MS/MS By MS/MS 2.04 0.735 12 22 14 35 13 43.715 43.633 2 3.2493E-37 6199 20211116_3430_TMUAki_TMT10x_P_F3 161.17 146.3 43173000 72714000 255880 76649000 46577000 66500000 52393000 40264000 39261000 43213000 57121000 40198000 67864000 3036500 77765000 44807000 67782000 52433000 42350000 41150000 42083000 54550000 35 35 16 35 35 35 35 35 35 35 35 26857000 45609000 227030 47183000 26245000 47923000 32176000 26369000 25469000 26662000 34082000 25007000 42564000 2309600 48034000 25320000 48291000 32120000 27906000 26510000 26027000 32611000 27 27 10 27 27 27 27 27 27 27 27 16316000 27104000 28854 29466000 20332000 18576000 20216000 13895000 13792000 16551000 23040000 15191000 25300000 726960 29730000 19487000 19491000 20313000 14443000 14640000 16055000 21939000 8 8 6 8 8 8 8 8 8 8 8 13562000000 6529700000 7031900000 540 1550 515 2939;2940;2941;2942;2943;2944;2945;2946;2947;2948;2949;2950;2951;2952;2953;2954;2955;2956;2957;2958;2959;2960;2961;2962;2963;2964;2965;2966;2967;2968;2969;2970;2971;2972;2973;2974;2975;2976;2977;2978;2979;2980;2981;2982;2983;2984;2985;2986 3596;3597;3598;3599;3600;3601;3602;3603;3604;3605;3606;3607;3608;3609;3610;3611;3612;3613;3614;3615;3616;3617;3618;3619;3620;3621;3622;3623;3624;3625;3626;3627;3628;3629;3630;3631;3632;3633;3634;3635;3636;3637;3638;3639;3640;3641 3621 46 AETLMTVTDPVHDIAFAPNLGR Oxidation (M) 2383.1842 0.18419532 2441 Q96EE3-1;Q96EE3 SEH1L Nucleoporin SEH1 yes no 0 0 1 0 By MS/MS 5 0 1 1 69.621 69.697 3 0.004387 22712 20211116_3433_TMUAki_TMT10x_P_F5 51.503 36.248 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 541 2441 516 2987 3642 3642 2753 1 AETLMTVTDPVHDIAFAPNLGR Unmodified 2367.1893 0.18928069 2441 Q96EE3-1;Q96EE3 SEH1L Nucleoporin SEH1 yes no 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 76.505 76.488 3 8.8855E-20 24680 20211116_3445_TMUAki_TMT10x_S_F6 150.98 128.77 5308900 8468600 118320 8897000 6598000 4976200 6554700 4052900 4014900 5048100 6302200 4943900 7903700 562070 8987500 6332100 5290500 6572300 4197100 4276800 4889200 6008700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5308900 8468600 118320 8897000 6598000 4976200 6554700 4052900 4014900 5048100 6302200 4943900 7903700 562070 8987500 6332100 5290500 6572300 4197100 4276800 4889200 6008700 2 2 1 2 2 2 2 2 2 2 2 806560000 0 806560000 542 2441 516 2988;2989 3643;3644 3644 2 AETLSGLGDSGAAGAAALSSASSETGTR Acetyl (Protein N-term) 2536.1889 0.18888258 1804 Q15424;Q15424-3;Q15424-2;Q15424-4 SAFB Scaffold attachment factor B1 yes no 1 0 0 0 By MS/MS By MS/MS 2.5 0.5 3 3 3 3 71.714 71.459 2;3 2.7999E-124 23089 20211116_3440_TMUAki_TMT10x_S_F2 223.29 196.32 13875000 23079000 128060 18026000 15360000 30214000 17437000 23820000 20742000 21426000 20454000 12919000 21517000 1242500 18928000 14784000 29884000 17680000 24470000 20947000 21024000 19740000 6 6 3 6 6 6 6 6 6 6 6 8180200 13046000 128060 10048000 7639300 22879000 9963700 14046000 11833000 12793000 11443000 7617600 12162000 789960 10654000 7391100 22318000 10043000 14690000 11942000 12546000 11051000 3 3 3 3 3 3 3 3 3 3 3 5694500 10033000 0 7977900 7720200 7334500 7472800 9774100 8909000 8632600 9010300 5301700 9354500 452560 8274300 7393200 7566400 7637400 9780300 9004100 8478100 8688800 3 3 0 3 3 3 3 3 3 3 3 2306900000 1029600000 1277300000 543 1804 517 2990;2991;2992;2993;2994;2995 3645;3646;3647;3648;3649;3650;3651;3652;3653 3652 9 AETLSGLGDSGAAGAAALSSASSETGTRR Acetyl (Protein N-term) 2692.29 0.28999361 1804 Q15424;Q15424-3;Q15424-2;Q15424-4 SAFB Scaffold attachment factor B1 yes no 1 0 0 1 By MS/MS By MS/MS 3.5 0.5 4 4 5 3 61.394 61.251 2;3 9.1056E-143 19022 20211116_3431_TMUAki_TMT10x_P_F4 231.37 194.12 4217200 7473400 147390 7774300 6030900 7241100 5229200 5514500 5786600 5266100 6122800 3927500 6974600 303110 7901900 5769300 7370800 5363400 5686500 5874400 5153400 5896000 7 7 1 7 7 7 7 7 7 7 7 2274700 4159000 147390 4510800 3338200 5485100 3536600 3322500 3405400 3239000 3501700 2118800 3882100 303110 4591400 3212600 5479200 3572900 3484700 3473600 3166800 3375000 4 4 1 4 4 4 4 4 4 4 4 1942500 3314500 0 3263600 2692600 1756000 1692600 2192100 2381100 2027100 2621100 1808700 3092600 0 3310400 2556700 1891600 1790500 2201800 2400800 1986500 2521000 3 3 0 3 3 3 3 3 3 3 3 9121800000 5322500000 3799300000 544 1804 518 2996;2997;2998;2999;3000;3001;3002;3003 3654;3655;3656;3657;3658;3659;3660 3658 7 AEVAAEFLNDRVPNCNVVPHFNK Unmodified 2639.2915 0.29145435 2268 Q8TBC4;Q8TBC4-2 UBA3 NEDD8-activating enzyme E1 catalytic subunit yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 64.292 64.554 4 2.6863E-15 21220 20211116_3435_TMUAki_TMT10x_P_F7 130.05 118.75 18422000 32745000 287200 32464000 24146000 30478000 22854000 22733000 21082000 23373000 25588000 17154000 30554000 1832400 33109000 23135000 30998000 23195000 23523000 21685000 22801000 24544000 4 4 3 4 4 4 4 4 4 4 4 9763300 16206000 85531 16147000 12336000 20370000 13249000 11887000 11097000 12185000 12605000 9090900 15122000 882470 16540000 11854000 20300000 13325000 12523000 11437000 11888000 12113000 2 2 1 2 2 2 2 2 2 2 2 8658300 16539000 201670 16318000 11810000 10109000 9605500 10846000 9984400 11188000 12983000 8063200 15432000 949930 16569000 11281000 10698000 9870300 11001000 10247000 10913000 12431000 2 2 2 2 2 2 2 2 2 2 2 3967800000 2622900000 1344900000 545 2268 519 3004;3005;3006 3661;3662;3663;3664 3661 4 AEVEETLK Acetyl (Protein N-term) 959.48114 0.48114184 2884 Q9NP97;Q8TF09;Q9NP97-2 DYNLRB1;DYNLRB2 Dynein light chain roadblock-type 1;Dynein light chain roadblock-type 2 yes no 1 0 0 0 By MS/MS 1 0 1 1 52.311 52.03 2 0.028212 16911 20211116_3439_TMUAki_TMT10x_S_F1 42.835 25.908 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 546 2884 520 3007 3665 3665 1 AEVEVADELLENLAK Unmodified 1641.8461 0.84613171 2061 Q7L5D6;Q7L5D6-2 GET4 Golgi to ER traffic protein 4 homolog yes no 0 0 0 0 By MS/MS By MS/MS 1.44 0.497 5 4 3 6 71.333 71.313 2;3 1.3447E-51 26550 20211116_3428_TMUAki_TMT10x_P_F1 291.22 246.91 22749000 34330000 44477 39513000 18741000 26967000 22286000 10768000 12189000 16183000 22172000 21179000 32053000 1473400 39756000 18036000 27882000 22108000 11928000 13197000 15582000 21080000 6 6 2 6 6 6 6 6 6 6 6 18538000 27524000 44477 31662000 14067000 23151000 16966000 8163400 9266200 13098000 17622000 17258000 25698000 1140000 31881000 13539000 23772000 16819000 9204100 10060000 12589000 16741000 4 4 2 4 4 4 4 4 4 4 4 4211100 6806400 0 7850800 4674000 3816300 5320500 2604800 2923100 3084900 4550200 3920800 6355000 333330 7875000 4496500 4109400 5288800 2723900 3136400 2993100 4339000 2 2 0 2 2 2 2 2 2 2 2 3760100000 2408300000 1351800000 547 2061 521 3008;3009;3010;3011;3012;3013;3014;3015;3016 3666;3667;3668;3669;3670;3671;3672;3673 3666 8 AEVIMNYHVGETVLSLQK Oxidation (M) 2046.0456 0.045576569 1798 Q15393;Q15393-3 SF3B3 Splicing factor 3B subunit 3 yes no 0 0 1 0 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 62.041 62.293 3 2.9343E-07 18515 20211116_3434_TMUAki_TMT10x_P_F6 99.891 85.459 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 548 1798 522 3017;3018 3674;3675 3674 2417 2 AEVIMNYHVGETVLSLQK Unmodified 2030.0507 0.050661947 1798 Q15393;Q15393-3 SF3B3 Splicing factor 3B subunit 3 yes no 0 0 0 0 By MS/MS 8 0 1 1 69.034 69.135 3 0.001522 21923 20211116_3436_TMUAki_TMT10x_P_F8 64.83 46.692 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 549 1798 522 3019 3676 3676 1 AEVITCDVLLVCIGRR Unmodified 1872.9914 0.99137293 582 P09622;P09622-3;P09622-2 DLD Dihydrolipoyl dehydrogenase, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 39.604 39.907 3 0.055432 9479 20211116_3447_TMUAki_TMT10x_S_F8 39.005 8.8712 1245100 2083000 11761 2603600 3945200 2939800 1723900 2061200 2315800 1521000 2148800 1159400 1945600 151120 2624400 3727600 2954400 1883100 2123800 2324100 1507700 2078000 3 3 2 3 3 3 3 3 3 3 3 902630 1540600 8886.9 1897400 3640900 2699400 1426500 1495600 1760500 1149500 1549900 840500 1438800 120590 1922400 3435900 2673400 1573100 1571000 1768900 1136900 1501700 2 2 1 2 2 2 2 2 2 2 2 342510 542470 2873.6 706250 304250 240360 297470 565570 555280 371490 598850 318930 506790 30538 701950 291730 280910 310070 552810 555160 370820 576340 1 1 1 1 1 1 1 1 1 1 1 280150000 215920000 64233000 550 582 523 3020;3021;3022 3677 3677 1 AEVLISTVGPEDCVVPFLTRPK Unmodified 2426.2879 0.28793211 1254 P56192;P56192-2 MARS Methionine--tRNA ligase, cytoplasmic yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 77.475 77.453 3 3.0958E-14 25380 20211116_3436_TMUAki_TMT10x_P_F8 131.18 111.2 9209300 16623000 182380 15237000 12108000 14259000 13589000 12316000 12072000 12191000 13439000 8575900 15506000 950860 15627000 11656000 14543000 13660000 12617000 12396000 11912000 12921000 3 3 2 3 3 3 3 3 3 3 3 3309800 6037400 75095 5865500 3626900 6788100 4566800 4148600 3918300 4246100 4840500 3082300 5632900 348830 6009700 3505800 6799000 4563100 4354200 4047300 4142900 4640900 1 1 1 1 1 1 1 1 1 1 1 5899500 10585000 107290 9371200 8481100 7470700 9022300 8167600 8154100 7944900 8598000 5493600 9872700 602030 9617500 8150600 7743500 9096600 8262400 8349200 7768600 8280500 2 2 1 2 2 2 2 2 2 2 2 2236600000 1319700000 916880000 551 1254 524 3023;3024 3678;3679;3680 3678 3 AEVQVLVLDGR Acetyl (Protein N-term) 1239.6823 0.68230126 983 P40429 RPL13A 60S ribosomal protein L13a yes yes 1 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 74.94 74.905 2 1.968E-07 24157 20211116_3428_TMUAki_TMT10x_P_F1 108.43 87.531 3245200 5236600 60281 5101600 3545400 4800100 3902500 3166800 2979200 3371100 3917900 3022100 4885800 329440 5209500 3412200 4871900 3911200 3308300 3104500 3284000 3750400 2 2 2 2 2 2 2 2 2 2 2 1491900 2453900 19152 2378900 1570700 2801700 1824300 1446900 1333800 1583200 1869300 1389200 2289400 142640 2438500 1513600 2797700 1822000 1543600 1397400 1540600 1786700 1 1 1 1 1 1 1 1 1 1 1 1753300 2782800 41129 2722700 1974800 1998400 2078100 1719800 1645400 1788000 2048600 1632800 2596400 186800 2771000 1898600 2074200 2089100 1764700 1707200 1743400 1963700 1 1 1 1 1 1 1 1 1 1 1 534650000 341420000 193230000 552 983 525 3025;3026;3027;3028 3681;3682;3683;3684 3681 4 AEVTMGDPHQQTLAR Oxidation (M) 1668.789 0.78896795 1661 Q13769 THOC5 THO complex subunit 5 homolog yes yes 0 0 1 0 By MS/MS 3 0 1 1 29.728 29.465 3 0.00087375 8883 20211116_3441_TMUAki_TMT10x_S_F3 67.102 55.488 50108 90631 2786.1 86167 49369 42381 56280 51182 43727 45868 66297 46676 84551 6740.5 87565 47680 46074 56337 51435 45835 45016 63256 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50108 90631 2786.1 86167 49369 42381 56280 51182 43727 45868 66297 46676 84551 6740.5 87565 47680 46074 56337 51435 45835 45016 63256 1 1 1 1 1 1 1 1 1 1 1 5595700 0 5595700 553 1661 526 3029 3685 3685 2222 1 AEYEGDGIPTVFVAVAGR Unmodified 1849.921 0.92102798 767 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 0 0 By MS/MS By MS/MS 3.85 0.948 1 4 4 4 8 5 74.744 74.662 2;3 5.8586E-63 24423 20211116_3431_TMUAki_TMT10x_P_F4 261.38 243.95 30501000 48991000 109890 50508000 32658000 41283000 35338000 24113000 23899000 27007000 35085000 28397000 45719000 2355000 51281000 31369000 42239000 35351000 25469000 25210000 26257000 33499000 12 12 5 12 12 12 12 12 12 12 12 16240000 25471000 58936 26601000 15588000 26333000 18147000 12183000 12794000 14027000 18722000 15120000 23771000 1221700 27053000 15003000 26525000 18108000 13156000 13461000 13623000 17877000 6 6 3 6 6 6 6 6 6 6 6 14261000 23520000 50953 23907000 17071000 14950000 17191000 11929000 11104000 12981000 16364000 13277000 21948000 1133200 24228000 16366000 15714000 17243000 12313000 11750000 12634000 15623000 6 6 2 6 6 6 6 6 6 6 6 5841900000 3345900000 2496000000 554 767 527 3030;3031;3032;3033;3034;3035;3036;3037;3038;3039;3040;3041;3042 3686;3687;3688;3689;3690;3691;3692;3693;3694;3695;3696;3697;3698;3699 3688 14 AEYLASIFGTEK Acetyl (Protein N-term) 1369.6765 0.67654718 597 Q01081;P0DN76;Q01081-2;Q8WU68;Q01081-3;Q8WU68-3;Q8WU68-2 U2AF1;U2AF1L4 Splicing factor U2AF 35 kDa subunit;Splicing factor U2AF 26 kDa subunit yes no 1 0 0 0 By MS/MS By MS/MS 3.56 1.94 3 10 10 3 3 3 2 2 18 18 67.094 67.06 2;3 8.0311E-25 27860 20211116_3431_TMUAki_TMT10x_P_F4 176.83 148.66 237270000 397780000 1721800 355270000 255650000 342170000 256250000 212590000 190340000 229460000 291280000 220910000 371010000 15828000 364330000 245040000 346320000 257590000 223190000 200100000 223400000 277870000 29 29 9 28 28 28 27 29 29 29 29 116950000 186760000 1681500 184850000 93385000 215030000 104400000 109630000 86497000 113960000 137270000 108890000 174260000 7333000 189160000 89837000 214820000 104690000 116910000 90581000 111120000 130850000 16 16 6 16 16 16 15 16 16 16 16 120320000 211020000 40308 170420000 162260000 127150000 151850000 102960000 103840000 115490000 154010000 112010000 196750000 8494600 175160000 155200000 131500000 152900000 106280000 109520000 112280000 147020000 13 13 3 12 12 12 12 13 13 13 13 79244000000 38275000000 40969000000 555 597 528 3043;3044;3045;3046;3047;3048;3049;3050;3051;3052;3053;3054;3055;3056;3057;3058;3059;3060;3061;3062;3063;3064;3065;3066;3067;3068;3069;3070;3071;3072;3073;3074;3075;3076;3077;3078 3700;3701;3702;3703;3704;3705;3706;3707;3708;3709;3710;3711;3712;3713;3714;3715;3716;3717;3718;3719;3720;3721;3722;3723;3724;3725;3726;3727;3728;3729;3730;3731;3732;3733;3734;3735;3736;3737 3710 38 AFADALEVIPMALSENSGMNPIQTMTEVR 3 Oxidation (M) 3182.4934 0.49338614 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 3 0 By MS/MS By MS/MS 3.75 1.09 1 2 1 2 2 80.04 80.035 3;4 0.00044693 27088 20211116_3442_TMUAki_TMT10x_S_F4 60.419 49.515 2290400 3765000 0 3140100 2993100 3466600 3072400 2895300 3201200 2929300 3285200 2132300 3510800 83280 3252400 2869900 3498600 3116300 2973600 3254000 2859500 3166500 3 3 0 3 3 3 3 3 3 3 3 504190 785230 0 770670 484820 985680 604660 732440 707490 763690 685340 469420 732640 37697 790460 467630 985190 610250 758410 714470 744580 661810 1 1 0 1 1 1 1 1 1 1 1 1786200 2979800 0 2369400 2508300 2480900 2467700 2162900 2493700 2165600 2599900 1662900 2778200 45583 2461900 2402300 2513400 2506100 2215200 2539500 2114900 2504700 2 2 0 2 2 2 2 2 2 2 2 3858000000 1416100000 2441900000 556 1079 529 3079;3080;3081;3082 3738;3739;3740 3739 1399;1400;1401 3 AFADALEVIPMALSENSGMNPIQTMTEVR Oxidation (M) 3150.5036 0.5035569 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 1 0 By MS/MS By MS/MS 5.46 1.22 1 2 3 4 3 4 9 82.164 82.169 3;4 1.9625E-34 29173 20211116_3446_TMUAki_TMT10x_S_F7 177.3 166.09 4728700 7686400 28430 7951600 6042600 5076500 5929300 3619900 3206300 3901800 5735000 4402800 7173300 325170 8050200 5790700 5316200 5936000 3762400 3470700 3799100 5454100 13 13 5 13 13 13 13 13 13 13 13 824770 1350800 8647.1 1195400 811710 1189900 976890 607530 471960 632070 922380 768010 1259800 47333 1230400 782980 1199500 966630 647820 518220 616300 875850 3 3 2 3 3 3 3 3 3 3 3 3903900 6335600 19783 6756100 5230900 3886600 4952500 3012400 2734300 3269800 4812600 3634800 5913400 277840 6819800 5007700 4116800 4969400 3114600 2952500 3182800 4578200 10 10 3 10 10 10 10 10 10 10 10 2188900000 478270000 1710600000 557 1079 529 3083;3084;3085;3086;3087;3088;3089;3090;3091;3092;3093;3094;3095 3741;3742;3743;3744;3745;3746;3747;3748;3749;3750;3751;3752;3753 3752 1399;1400;1401 13 AFADALEVIPMALSENSGMNPIQTMTEVR 2 Oxidation (M) 3166.4985 0.49847152 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 2 0 By MS/MS By MS/MS 5.33 1.25 1 2 2 1 3 3 81.073 81.07 4 0.0006273 26245 20211116_3444_TMUAki_TMT10x_S_F5 59.046 46.732 7301900 12648000 89223 11998000 8559200 9859800 9625500 5830900 5555000 6960100 9258600 6799000 11799000 648310 12254000 8235400 10086000 9581800 6165600 5960800 6751100 8816800 7 7 3 7 7 7 7 7 7 7 7 2521000 4357900 28842 4244000 2432700 4270600 2850200 2269000 1990600 2382100 3243000 2347300 4066000 212010 4338000 2343300 4303900 2842600 2411400 2107200 2321800 3089600 2 2 1 2 2 2 2 2 2 2 2 4780900 8289900 60381 7753800 6126500 5589200 6775300 3561800 3564400 4578100 6015700 4451700 7733400 436310 7915600 5892100 5781900 6739100 3754200 3853600 4429300 5727200 5 5 2 5 5 5 5 5 5 5 5 4129300000 1719500000 2409800000 558 1079 529 3096;3097;3098;3099;3100;3101 3754;3755;3756;3757;3758;3759;3760 3758 1399;1400;1401 7 AFADAMEVIPSTLAENAGLNPISTVTELR Oxidation (M) 3045.5329 0.53286642 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 1 0 By MS/MS By MS/MS 4.57 1.59 3 2 6 3 4 3 11 10 80.111 80.107 2;3;4 1.7031E-64 26139 20211116_3445_TMUAki_TMT10x_S_F6 224.53 212.78 33227000 55365000 453240 49015000 34823000 53765000 46303000 37181000 38567000 39464000 44566000 30939000 51638000 2256500 50523000 33683000 54106000 46128000 38708000 39787000 38448000 42806000 28 28 9 28 28 28 28 28 28 28 28 16199000 26851000 340840 23887000 14904000 31802000 19495000 18720000 18889000 19799000 21444000 15084000 25043000 1431300 24696000 14413000 31615000 19516000 19726000 19333000 19292000 20608000 13 13 5 13 13 13 13 13 13 13 13 17028000 28515000 112400 25128000 19918000 21963000 26808000 18461000 19678000 19664000 23122000 15855000 26595000 825250 25826000 19270000 22491000 26612000 18982000 20454000 19156000 22198000 15 15 4 15 15 15 15 15 15 15 15 46344000000 21704000000 24640000000 559 1147 530 3102;3103;3104;3105;3106;3107;3108;3109;3110;3111;3112;3113;3114;3115;3116;3117;3118;3119;3120;3121;3122 3761;3762;3763;3764;3765;3766;3767;3768;3769;3770;3771;3772;3773;3774;3775;3776;3777;3778;3779;3780;3781;3782;3783;3784;3785;3786;3787;3788;3789;3790 3784 1520 30 AFADAMEVIPSTLAENAGLNPISTVTELR Unmodified 3029.538 0.53795179 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 By MS/MS By MS/MS 5.38 1.39 1 4 1 3 4 6 7 82.141 82.144 3;4 7.8857E-53 27563 20211116_3431_TMUAki_TMT10x_P_F4 209.16 192.76 8339900 13034000 106120 13942000 10219000 10489000 11121000 5308800 5579400 6073200 10323000 7765700 12165000 571690 14107000 9825100 10782000 11062000 5681900 6086900 5899900 9811000 14 14 9 14 14 14 14 14 14 14 14 3220500 4922900 30394 5463100 3573500 5860800 4311000 2291300 2356500 2459400 4172100 2998600 4595600 194380 5541100 3444500 5865800 4273800 2514900 2547300 2395000 3968500 6 6 3 6 6 6 6 6 6 6 6 5119300 8110600 75727 8479000 6645400 4628500 6810000 3017400 3222900 3613800 6150500 4767200 7569400 377310 8566400 6380600 4916500 6788000 3167100 3539600 3504900 5842500 8 8 6 8 8 8 8 8 8 8 8 3845800000 1800100000 2045800000 560 1147 530 3123;3124;3125;3126;3127;3128;3129;3130;3131;3132;3133;3134;3135 3791;3792;3793;3794;3795;3796;3797;3798;3799;3800;3801;3802;3803;3804 3792 14 AFADPEVLRR Unmodified 1172.6302 0.63020611 314 O75179;O75179-3;O75179-6;O75179-7;O75179-2;Q8IWZ3;Q8IWZ3-6;O75179-5;O75179-4;Q8IWZ3-4;Q8IWZ3-5;Q8IWZ3-2 ANKRD17;ANKHD1 Ankyrin repeat domain-containing protein 17;Ankyrin repeat and KH domain-containing protein 1 yes no 0 0 0 1 By MS/MS 6 0 1 1 39.677 39.84 3 0.00079406 9690 20211116_3445_TMUAki_TMT10x_S_F6 90.263 72.414 308980 516960 3578 567050 288510 260700 280440 359720 419660 333250 474920 287720 482560 28665 570360 276650 286710 289190 359950 422800 326560 456430 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 308980 516960 3578 567050 288510 260700 280440 359720 419660 333250 474920 287720 482560 28665 570360 276650 286710 289190 359950 422800 326560 456430 1 1 1 1 1 1 1 1 1 1 1 20863000 0 20863000 561 314 531 3136 3805 3805 1 AFAETHIK Unmodified 915.48142 0.48141661 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 34.879 34.948 3 0.00044054 7419 20211116_3444_TMUAki_TMT10x_S_F5 126.62 86.353 3080700 5000700 0 4828800 3616600 3175500 3183800 2250000 2411300 2173200 3229900 2868300 4665500 244920 4913600 3455700 3316100 3228200 2332000 2515900 2125600 3090400 3 3 0 3 3 3 3 3 3 3 3 1496200 2422500 0 2291300 1923500 1838700 1379200 1060300 1152700 1034000 1503900 1393100 2259900 123720 2340000 1830200 1883600 1420400 1116500 1195000 1010900 1439800 1 1 0 1 1 1 1 1 1 1 1 1584500 2578200 0 2537400 1693100 1336700 1804600 1189700 1258600 1139200 1726000 1475200 2405600 121200 2573500 1625400 1432500 1807800 1215500 1320900 1114700 1650600 2 2 0 2 2 2 2 2 2 2 2 150650000 93782000 56871000 562 1018 532 3137;3138 3806;3807;3808 3808 3 AFAHITGGGLLENIPR Unmodified 1664.8998 0.89983903 766 P22102 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 60.921 60.82 3 1.0453E-29 18413 20211116_3428_TMUAki_TMT10x_P_F1 196.18 171.62 21342000 36098000 424510 34254000 27225000 40047000 26829000 29363000 26809000 28629000 31202000 19875000 33676000 2244500 35162000 26120000 40200000 27233000 30371000 27430000 27990000 29963000 10 10 8 10 10 10 10 10 10 10 10 12773000 20935000 145610 20337000 17344000 30692000 17580000 17714000 16083000 17007000 18215000 11894000 19533000 1255800 20944000 16644000 30336000 17774000 18644000 16503000 16639000 17505000 6 6 4 6 6 6 6 6 6 6 6 8568600 15163000 278900 13917000 9881500 9355400 9248100 11649000 10725000 11622000 12987000 7980300 14144000 988710 14218000 9475800 9863600 9459600 11727000 10927000 11352000 12458000 4 4 4 4 4 4 4 4 4 4 4 7157300000 4092500000 3064900000 563 766 533 3139;3140;3141;3142;3143;3144 3809;3810;3811;3812;3813;3814;3815;3816;3817;3818 3809 10 AFALNDLDDYEK Unmodified 1412.646 0.64597533 1688 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes yes 0 0 0 0 By MS/MS 4 0 1 1 68.183 68.265 2 0.001427 21866 20211116_3431_TMUAki_TMT10x_P_F4 79.659 63.405 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 564 1688 534 3145 3819 3819 1 AFAMIIDKLEEDISSSMTNSTAASRPPVTLR 2 Oxidation (M) 3382.6749 0.67485598 1792 Q15366;Q15366-6;Q15366-3;Q15366-2;Q15366-4;Q15366-5;Q15366-7;Q15366-8 PCBP2 Poly(rC)-binding protein 2 yes no 0 0 2 2 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 79.536 79.544 4 0.0030744 26229 20211116_3436_TMUAki_TMT10x_P_F8 46.834 44.723 10474000 17344000 122750 13661000 13000000 16810000 11767000 14962000 18832000 16058000 13791000 9753100 16170000 1012400 14244000 12441000 16889000 12219000 15338000 18670000 15638000 13460000 3 3 2 3 3 3 3 3 3 3 3 2630000 4101600 0 3019000 1796100 5815500 2386900 4546500 6531100 5159800 4034200 2448800 3823200 200680 3198100 1736700 5723400 2518500 4705000 6374400 5014100 3968900 1 1 0 1 1 1 1 1 1 1 1 7843900 13243000 122750 10642000 11203000 10994000 9379700 10415000 12301000 10898000 9757300 7304400 12347000 811760 11046000 10704000 11166000 9700000 10633000 12296000 10624000 9491200 2 2 2 2 2 2 2 2 2 2 2 4567100000 2442000000 2125200000 565 1792 535 3146;3147;3148 3820 3820 2411;2412 1 AFANLRK Acetyl (Protein N-term) 860.48684 0.48683634 201 O43175 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 1 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 42.638 42.916 2 0.0010053 11228 20211116_3436_TMUAki_TMT10x_P_F8 68.033 63.178 3540400 5941600 8442.9 5907700 7675000 6741300 4176900 6340500 7296400 4650500 6220900 3296400 5544000 344410 6041700 7270700 6807200 4516300 6416300 7248100 4611600 6034300 3 3 1 3 3 3 3 3 3 3 3 1539900 2505200 0 2478400 5682500 4752400 2347900 2654500 3152900 2033600 2743000 1433800 2337500 179680 2564200 5364500 4654100 2580900 2786200 3157700 2011700 2658800 1 1 0 1 1 1 1 1 1 1 1 2000500 3436400 8442.9 3429400 1992400 1988900 1829000 3686100 4143500 2616900 3477900 1862600 3206500 164740 3477500 1906200 2153100 1935400 3630100 4090400 2599800 3375600 2 2 1 2 2 2 2 2 2 2 2 305870000 175360000 130510000 566 201 536 3149;3150;3151 3821;3822;3823 3821 3 AFDIIER Unmodified 862.45487 0.45486751 2184 Q8N1F7;Q8N1F7-2 NUP93 Nuclear pore complex protein Nup93 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 51.053 50.934 2 0.072247 17547 20211116_3441_TMUAki_TMT10x_S_F3 60.682 28.727 4228600 6828200 0 7667000 5243100 5864700 4073500 5769800 5940900 4793500 6085900 3937000 6374600 328680 7735400 4995500 6083600 4250900 5841900 5967200 4721800 5866400 2 2 0 2 2 2 2 2 2 2 2 1498500 2406200 0 2691000 2909900 3641700 1851600 2171700 2301400 1763600 2303700 1395100 2246300 117560 2739300 2761800 3618300 1947400 2270000 2321600 1739300 2222200 1 1 0 1 1 1 1 1 1 1 1 2730100 4422100 0 4976100 2333200 2223000 2221900 3598200 3639500 3029800 3782200 2541900 4128300 211120 4996100 2233700 2465400 2303500 3571900 3645600 2982500 3644200 1 1 0 1 1 1 1 1 1 1 1 329920000 156040000 173880000 567 2184 537 3152;3153;3154 3824 3824 1 AFDLIVDRPVTLVR Unmodified 1612.9301 0.93007653 456 O96000;O96000-2 NDUFB10 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 66.591 66.487 3 3.9905E-25 20779 20211116_3428_TMUAki_TMT10x_P_F1 199.03 166.97 13613000 22523000 30223 22023000 16620000 15885000 16065000 9850300 9410700 9742300 15937000 12675000 21015000 1141600 22411000 15920000 16426000 16118000 10316000 10097000 9519300 15172000 4 4 2 4 4 4 4 4 4 4 4 3132400 4761200 24267 4609300 2532600 4124700 3125200 2276300 2099100 2161400 3587800 2916800 4442200 273910 4705700 2444700 4190300 3107300 2404200 2233200 2115600 3414900 1 1 1 1 1 1 1 1 1 1 1 10481000 17762000 5955.2 17414000 14087000 11760000 12939000 7574000 7311600 7580900 12349000 9758400 16573000 867700 17705000 13476000 12235000 13011000 7912200 7863300 7403600 11757000 3 3 1 3 3 3 3 3 3 3 3 2981300000 572100000 2409200000 568 456 538 3155;3156;3157;3158 3825;3826;3827;3828;3829 3825 5 AFDLVPPEAVPEQKDPDPEFPTVK Unmodified 2664.3323 0.33229934 2466 Q96G03;Q96G03-2 PGM2 Phosphoglucomutase-2 yes no 0 0 0 1 By MS/MS By MS/MS 5 0.816 1 1 1 1 2 75.462 75.421 4 0.0093793 25263 20211116_3442_TMUAki_TMT10x_S_F4 44.632 25.913 10348000 17776000 157110 17585000 13148000 13945000 12734000 12083000 11488000 12153000 13718000 9635400 16586000 739290 17899000 12604000 14388000 12900000 12381000 11820000 11866000 13164000 4 4 1 4 4 4 4 4 4 4 4 3683500 5716300 0 5329400 3792900 7369500 4215300 4015000 4225000 4320900 4518200 3429400 5332500 270580 5494700 3645100 7306300 4254000 4260600 4308200 4207400 4349500 2 2 0 2 2 2 2 2 2 2 2 6664000 12060000 157110 12256000 9355100 6575000 8519100 8068000 7262600 7832000 9199500 6206000 11254000 468710 12404000 8958600 7082100 8646100 8120600 7512200 7658800 8814400 2 2 1 2 2 2 2 2 2 2 2 2584000000 615650000 1968400000 569 2466 539 3159;3160;3161 3830;3831;3832;3833 3832 4 AFDQGADAIYDHINEGK Unmodified 1862.8435 0.84350594 3097 Q9UDW1 UQCR10 Cytochrome b-c1 complex subunit 9 yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 58.275 58.275 3 4.8851E-07 18262 20211116_3442_TMUAki_TMT10x_S_F4 101.28 86.188 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 570 3097 540 3162;3163;3164 3834;3835;3836 3836 3 AFDSGIIPMEFVNK Oxidation (M) 1582.7701 0.77012999 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 1 0 By MS/MS By MS/MS 6 0.775 3 4 3 6 4 73.269 73.326 2;3 2.3787E-06 24988 20211116_3435_TMUAki_TMT10x_P_F7 107.17 86.502 61732000 102450000 463240 103200000 68970000 96452000 71431000 65389000 64607000 69765000 77221000 57480000 95600000 5373400 105130000 66203000 97977000 72116000 68182000 66473000 67956000 74102000 14 14 7 14 14 14 14 14 14 14 14 39873000 64753000 153430 66990000 42498000 71771000 44989000 37900000 38507000 41532000 46751000 37125000 60430000 3238900 68254000 40805000 72059000 45303000 40352000 39750000 40413000 44844000 8 8 3 8 8 8 8 8 8 8 8 21859000 37698000 309810 36213000 26472000 24681000 26442000 27489000 26100000 28233000 30471000 20355000 35171000 2134500 36876000 25398000 25918000 26812000 27829000 26722000 27544000 29259000 6 6 4 6 6 6 6 6 6 6 6 8666100000 4345400000 4320700000 571 1200 541 3165;3166;3167;3168;3169;3170;3171;3172;3173;3174 3837;3838;3839;3840;3841;3842;3843;3844;3845;3846;3847;3848;3849;3850 3842 1600 14 AFDSGIIPMEFVNK Unmodified 1566.7752 0.77521537 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 By MS/MS By MS/MS 6.86 0.639 2 4 1 3 4 78.434 78.452 2;3 0.00025072 27634 20211116_3446_TMUAki_TMT10x_S_F7 89.171 49.462 22809000 35913000 466200 36454000 22253000 21542000 26712000 12555000 10898000 14617000 22657000 21240000 33512000 2200700 36928000 21470000 22664000 26373000 13280000 12197000 14191000 21493000 4 4 3 4 4 4 4 4 4 4 4 5187000 8577300 118380 7985300 4904000 7651800 5711900 3626400 3437000 4295600 5621500 4830500 8001300 536400 8183200 4729700 7725300 5681100 3910200 3673600 4167800 5355300 1 1 1 1 1 1 1 1 1 1 1 17622000 27336000 347820 28468000 17349000 13890000 21000000 8928300 7461400 10322000 17036000 16409000 25511000 1664300 28745000 16740000 14938000 20691000 9369900 8522900 10023000 16137000 3 3 2 3 3 3 3 3 3 3 3 4316300000 2027400000 2288900000 572 1200 541 3175;3176;3177;3178;3179;3180;3181 3851;3852;3853;3854 3854 4 AFDTAGNGYCR Unmodified 1230.5088 0.50877035 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS 4 0 1 1 35.741 35.766 2 0.0029476 8686 20211116_3431_TMUAki_TMT10x_P_F4 77.14 57.625 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 573 1092 542 3182 3855 3855 1 AFELMHSGK Unmodified 1018.4906 0.49060109 631 P11766 ADH5 Alcohol dehydrogenase class-3 yes yes 0 0 0 0 By MS/MS 7 0 1 1 41.676 42.269 3 0.032171 12658 20211116_3446_TMUAki_TMT10x_S_F7 57.348 30.675 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 574 631 543 3183 3856 3856 1 AFEPYLEILEVYSTK Unmodified 1800.9186 0.91856837 433 O95470 SGPL1 Sphingosine-1-phosphate lyase 1 yes yes 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 81.818 81.821 3 0.017063 26487 20211116_3434_TMUAki_TMT10x_P_F6 45.084 24.131 1632400 2908300 17320 2772200 1785600 3041500 1998500 1651600 1591900 1893700 2203000 1520000 2713200 152130 2841700 1718400 3050600 2003400 1756600 1659000 1839500 2106200 2 2 1 2 2 2 2 2 2 2 2 1632400 2908300 17320 2772200 1785600 3041500 1998500 1651600 1591900 1893700 2203000 1520000 2713200 152130 2841700 1718400 3050600 2003400 1756600 1659000 1839500 2106200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 95304000 95304000 0 575 433 544 3184;3185 3857;3858 3857 2 AFESDVFHNR Unmodified 1220.5574 0.5574351 114 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 38.494 38.674 3 9.8825E-08 10247 20211116_3442_TMUAki_TMT10x_S_F4 117.02 103.25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 576 114 545 3186 3859 3859 1 AFEVSENGNLVVSGK Unmodified 1548.7784 0.77838649 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 5.22 0.629 1 5 3 5 4 58.336 58.464 2;3 3.4257E-32 18113 20211116_3433_TMUAki_TMT10x_P_F5 193.28 161.06 28018000 46929000 48088 47824000 32768000 39003000 27718000 31665000 32174000 29968000 33915000 26087000 43793000 2299200 48593000 31287000 40113000 28518000 32514000 32598000 29339000 32662000 6 6 2 6 6 6 6 6 6 6 6 13013000 21419000 35026 21176000 19042000 26925000 16123000 14863000 15604000 15393000 16136000 12116000 19986000 1132400 21706000 18183000 26803000 16491000 15737000 15916000 15012000 15550000 3 3 1 3 3 3 3 3 3 3 3 15005000 25510000 13062 26648000 13726000 12078000 11595000 16801000 16570000 14576000 17779000 13971000 23808000 1166700 26887000 13104000 13309000 12027000 16777000 16682000 14327000 17113000 3 3 1 3 3 3 3 3 3 3 3 3322800000 2002700000 1320100000 577 1092 546 3187;3188;3189;3190;3191;3192;3193;3194;3195 3860;3861;3862;3863;3864;3865;3866;3867;3868;3869 3863 10 AFFAGSQR Unmodified 882.4348 0.43480077 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 By MS/MS By MS/MS 4 3.29 2 1 2 3 2 38.31 38.474 2 0.015311 11404 20211116_3439_TMUAki_TMT10x_S_F1 77.072 42.14 1161600 1971600 8823.8 2060900 1152500 1007500 936340 1875900 1913400 1488900 1826200 1081600 1840000 104400 2080400 1100200 1110900 991320 1851900 1900700 1470100 1764300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1161600 1971600 8823.8 2060900 1152500 1007500 936340 1875900 1913400 1488900 1826200 1081600 1840000 104400 2080400 1100200 1110900 991320 1851900 1900700 1470100 1764300 2 2 2 2 2 2 2 2 2 2 2 63987000 0 63987000 578 1730 547 3196;3197;3198;3199;3200 3870;3871;3872;3873;3874 3873 5 AFFESHPAPSAER Unmodified 1444.6735 0.67352749 1246 P55786;P55786-2 NPEPPS Puromycin-sensitive aminopeptidase yes no 0 0 0 0 By MS/MS By MS/MS 4.25 0.829 1 1 2 2 2 35.782 35.836 3 4.5894E-15 7758 20211116_3444_TMUAki_TMT10x_S_F5 172.92 154.41 6565600 9314300 998.72 11605000 14707000 13328000 8140700 7290800 7842100 6985500 8616600 6112400 8699800 545710 11703000 13929000 13335000 8591500 7708300 8018500 6835000 8288100 5 5 1 5 5 5 5 5 5 5 5 6069200 8534600 998.72 10726000 14251000 12879000 7701400 6609100 7117200 6420000 7899000 5650200 7971900 507010 10820000 13492000 12847000 8136200 7030400 7293800 6277900 7595700 4 4 1 4 4 4 4 4 4 4 4 496410 779650 0 878680 456420 448490 439260 681750 724880 565500 717570 462190 727870 38702 882970 437080 488670 455300 677900 724680 557090 692440 1 1 0 1 1 1 1 1 1 1 1 1164500000 1015400000 149120000 579 1246 548 3201;3202;3203;3204 3875;3876;3877;3878;3879;3880 3880 6 AFFSEVER Unmodified 983.47125 0.47124585 3217 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 0 0 By MS/MS By MS/MS 3.22 1.31 1 2 2 2 2 4 5 50.098 50.051 2 7.7299E-07 14364 20211116_3431_TMUAki_TMT10x_P_F4 217.64 156.84 59629000 94197000 577920 111230000 88268000 91654000 59734000 85715000 87497000 74583000 86741000 55521000 87959000 5402900 111980000 83922000 94445000 62942000 87116000 87771000 73300000 83699000 11 11 6 11 11 11 11 11 11 11 11 25241000 37392000 46647 46349000 58225000 63182000 33613000 35742000 37889000 30822000 35379000 23500000 34924000 2226300 46902000 55189000 62710000 35514000 37578000 38270000 30306000 34206000 4 4 1 4 4 4 4 4 4 4 4 34387000 56804000 531270 64883000 30043000 28472000 26121000 49973000 49608000 43761000 51362000 32021000 53035000 3176600 65076000 28734000 31734000 27428000 49538000 49502000 42995000 49493000 7 7 5 7 7 7 7 7 7 7 7 12758000000 7044000000 5714300000 580 3217 549 3205;3206;3207;3208;3209;3210;3211;3212;3213 3881;3882;3883;3884;3885;3886;3887;3888;3889;3890;3891 3883 11 AFFSEVERR Unmodified 1139.5724 0.57235688 3217 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 0 1 By MS/MS By MS/MS 5.14 1.25 1 1 2 2 1 3 4 40.43 40.609 3 9.2567E-08 9729 20211116_3434_TMUAki_TMT10x_P_F6 205.14 148.41 36681000 58568000 770830 61955000 55376000 51658000 37774000 51369000 47444000 43145000 49790000 34159000 54663000 3925200 62811000 52695000 53255000 39535000 51997000 47927000 42476000 47958000 11 11 5 11 11 11 11 11 11 11 11 13461000 20528000 16779 23165000 29943000 30907000 16396000 19691000 17642000 16378000 17879000 12533000 19165000 1285600 23561000 28366000 30756000 17379000 20487000 17901000 16132000 17239000 4 4 1 4 4 4 4 4 4 4 4 23220000 38040000 754050 38791000 25434000 20752000 21377000 31678000 29803000 26767000 31911000 21626000 35498000 2639600 39250000 24329000 22499000 22157000 31509000 30025000 26344000 30719000 7 7 4 7 7 7 7 7 7 7 7 3308600000 2049500000 1259100000 581 3217 550 3214;3215;3216;3217;3218;3219;3220 3892;3893;3894;3895;3896;3897;3898;3899;3900;3901 3895 10 AFGFSHLEALLDDSK Unmodified 1648.8097 0.80968662 2463 Q96FW1 OTUB1 Ubiquitin thioesterase OTUB1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.71 1.87 1 1 2 2 2 3 3 7 7 77.187 77.187 3 5.7684E-24 24652 20211116_3444_TMUAki_TMT10x_S_F5 185.95 150.21 79083000 126770000 628490 116790000 86460000 103920000 96243000 59391000 61728000 68505000 90465000 73637000 118250000 7082000 119660000 83176000 105660000 96043000 62905000 65327000 66530000 86379000 8 8 6 8 8 8 8 8 8 8 8 37523000 60226000 198620 55102000 33253000 60866000 41324000 28685000 30912000 33108000 42964000 34938000 56178000 3072700 56661000 32089000 60928000 41172000 30921000 32331000 32153000 41073000 4 4 2 4 4 4 4 4 4 4 4 41560000 66542000 429870 61691000 53207000 43053000 54919000 30706000 30816000 35397000 47501000 38700000 62073000 4009400 62999000 51086000 44732000 54871000 31984000 32996000 34378000 45306000 4 4 4 4 4 4 4 4 4 4 4 16924000000 7900400000 9023100000 582 2463 551 3221;3222;3223;3224;3225;3226;3227;3228;3229;3230;3231;3232;3233;3234 3902;3903;3904;3905;3906;3907;3908;3909;3910;3911;3912;3913;3914 3909 13 AFGILKR Unmodified 803.50176 0.50175812 547 P07954;P07954-2 FH Fumarate hydratase, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.957 1 2 2 1 3 3 42.554 42.693 3 0.0021839 10568 20211116_3444_TMUAki_TMT10x_S_F5 116.35 78.116 5096400 8117900 0 7369800 7490100 6260900 5869200 7130600 6064200 6780400 7195800 4744900 7572100 416900 7554600 7138600 6466100 6044200 7195600 6200900 6636500 6906500 4 4 0 4 4 4 4 4 4 4 4 556290 871830 0 818680 1230200 1167400 672950 736670 805610 705410 749220 517890 813320 47491 844160 1165000 1158100 715850 769790 811770 690230 724490 1 1 0 1 1 1 1 1 1 1 1 4540100 7246100 0 6551100 6259900 5093500 5196200 6394000 5258600 6075000 6446600 4227000 6758800 369400 6710500 5973500 5308000 5328300 6425800 5389200 5946300 6182100 3 3 0 3 3 3 3 3 3 3 3 233620000 31255000 202360000 583 547 552 3235;3236;3237;3238;3239;3240 3915;3916;3917;3918;3919;3920 3920 6 AFGIPIR Unmodified 772.45956 0.45955895 517 P06493 CDK1 Cyclin-dependent kinase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.89 2.77 2 2 2 1 2 5 4 51.762 51.704 2 0.0014663 14856 20211116_3436_TMUAki_TMT10x_P_F8 137.2 44.924 59046000 95100000 233980 97411000 79636000 85836000 62198000 67425000 66117000 62574000 76107000 54977000 88747000 5147600 99039000 75918000 87744000 64123000 69337000 67446000 61313000 73109000 9 9 4 9 9 9 9 9 9 9 9 26452000 41658000 151810 42870000 45615000 55499000 31587000 31045000 30403000 28494000 33558000 24628000 38876000 2394700 43837000 43381000 55210000 32737000 32722000 31094000 27934000 32275000 4 4 2 4 4 4 4 4 4 4 4 32594000 53442000 82172 54541000 34021000 30336000 30611000 36380000 35714000 34080000 42549000 30349000 49871000 2752900 55201000 32537000 32534000 31387000 36615000 36352000 33379000 40834000 5 5 2 5 5 5 5 5 5 5 5 5365800000 3459000000 1906900000 584 517 553 3241;3242;3243;3244;3245;3246;3247;3248;3249 3921;3922;3923;3924;3925;3926;3927;3928;3929 3924 9 AFGIPVR Unmodified 758.44391 0.44390889 1470 Q00535;Q00535-2 CDK5 Cyclin-dependent-like kinase 5 yes no 0 0 0 0 By MS/MS 1 0 1 1 46.683 46.683 2 0.04152 12678 20211116_3428_TMUAki_TMT10x_P_F1 67.76 36.182 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 585 1470 554 3250 3930 3930 1 AFGPGLEGGLVNK Unmodified 1257.6717 0.67173657 1703 Q14315;Q14315-2 FLNC Filamin-C yes no 0 0 0 0 By MS/MS 8 0 1 1 27.96 28.16 3 0.050201 4989 20211116_3447_TMUAki_TMT10x_S_F8 43.991 10.105 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 586 1703 555 3251 3931 3931 1 AFGPGLQGGSAGSPAR Unmodified 1428.711 0.71097563 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 5.19 2.9 5 3 4 4 8 8 38.877 39.111 2;3 3.0888E-93 9184 20211116_3447_TMUAki_TMT10x_S_F8 347.73 307.79 5486500 8773100 58544 10901000 10781000 8897900 6392800 8595800 10042000 7116800 9310900 5108700 8194200 554700 10940000 10229000 9181300 6826900 8710600 10030000 7011600 9004500 16 16 8 16 16 16 16 16 16 16 16 2304500 3538000 22533 4418100 7798400 6412700 3554400 3838400 4491200 3208400 4013100 2145900 3304600 283580 4474900 7371800 6352000 3856300 4013600 4511000 3159400 3886100 5 5 3 5 5 5 5 5 5 5 5 3182000 5235100 36011 6482500 2983100 2485200 2838400 4757500 5550500 3908400 5297800 2962800 4889600 271120 6465300 2857600 2829400 2970600 4697000 5519100 3852100 5118400 11 11 5 11 11 11 11 11 11 11 11 1671200000 1010600000 660640000 587 755 556 3252;3253;3254;3255;3256;3257;3258;3259;3260;3261;3262;3263;3264;3265;3266;3267 3932;3933;3934;3935;3936;3937;3938;3939;3940;3941;3942;3943;3944;3945;3946;3947;3948 3947 17 AFGSGIDIKPGTPPIAGR Unmodified 1752.9523 0.95226853 3311 Q9Y520;Q9Y520-3;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520-7;Q9Y520-2 PRRC2C Protein PRRC2C yes no 0 0 0 1 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 55.871 55.716 3 9.5393E-09 17919 20211116_3429_TMUAki_TMT10x_P_F2 118.72 80.699 15198000 24829000 31276 26758000 20261000 25326000 16331000 22056000 20896000 19487000 21495000 14151000 23175000 1344000 27140000 19330000 25815000 16912000 22513000 21079000 19137000 20717000 4 4 3 4 4 4 4 4 4 4 4 7542600 11652000 1011.3 12738000 12352000 17994000 10218000 10567000 10103000 8821700 10230000 7022800 10876000 677540 12997000 11789000 17840000 10473000 11066000 10288000 8687600 9864900 2 2 1 2 2 2 2 2 2 2 2 7655400 13177000 30264 14020000 7909800 7331600 6113200 11490000 10793000 10665000 11265000 7128200 12299000 666460 14143000 7540900 7974900 6439700 11447000 10792000 10450000 10852000 2 2 2 2 2 2 2 2 2 2 2 1272500000 951660000 320860000 588 3311 557 3268;3269;3270 3949;3950;3951;3952 3950 4 AFGVPVR Unmodified 744.42826 0.42825883 797 P24941;P24941-2 CDK2 Cyclin-dependent kinase 2 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 39.666 40.299 2 0.011913 10235 20211116_3436_TMUAki_TMT10x_P_F8 94.151 71.915 1079400 1768000 17277 1856000 1016400 863300 1055900 1124200 1167700 1031900 1403900 1005100 1650100 104710 1872400 976600 946570 1072400 1127000 1191400 1011600 1347000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1079400 1768000 17277 1856000 1016400 863300 1055900 1124200 1167700 1031900 1403900 1005100 1650100 104710 1872400 976600 946570 1072400 1127000 1191400 1011600 1347000 2 2 2 2 2 2 2 2 2 2 2 23254000 0 23254000 589 797 558 3271;3272;3273 3953;3954;3955;3956 3953 4 AFHNEAQVNPER Unmodified 1410.664 0.66402543 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 1.49 2 1 1 1 1 4 2 29.249 29.175 3 2.9056E-09 6040 20211116_3431_TMUAki_TMT10x_P_F4 150.49 137.61 713640 1131300 5760.1 960890 1006600 1073700 788890 663630 710650 656700 949350 664490 1054900 65881 993990 959860 1077700 809160 695220 734860 641650 908410 4 4 1 4 4 4 4 4 4 4 4 476060 722020 5760.1 623980 751330 848010 504080 438270 459850 440630 650010 443290 673350 47699 646840 714480 840870 522870 466350 476500 430250 621150 2 2 1 2 2 2 2 2 2 2 2 237590 409240 0 336910 255260 225730 284810 225360 250800 216060 299340 221200 381590 18182 347150 245380 236800 286300 228870 258360 211400 287260 2 2 0 2 2 2 2 2 2 2 2 104950000 58848000 46099000 590 712 559 3274;3275;3276;3277;3278;3279 3957;3958;3959;3960 3958 4 AFHNEAQVNPERK Unmodified 1538.759 0.75898845 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 1 By MS/MS By MS/MS 4.6 0.49 2 3 4 1 28.672 28.677 3;4 1.9598E-15 6314 20211116_3431_TMUAki_TMT10x_P_F4 177.93 154.7 3599700 6330500 102970 5952500 4934900 4714300 4211200 4079400 4597100 3694500 5044800 3352400 5905600 413100 6080700 4719900 4864800 4321400 4168100 4675700 3624100 4852600 5 5 5 5 5 5 5 5 5 5 5 1183500 1875300 21375 1824900 2282600 2302600 1460000 1224500 1332000 1176600 1566700 1102100 1749700 133430 1872400 2169300 2292000 1520000 1297900 1369000 1151100 1504100 4 4 4 4 4 4 4 4 4 4 4 2416200 4455200 81591 4127600 2652300 2411800 2751200 2854900 3265100 2517900 3478100 2250300 4155900 279660 4208300 2550600 2572800 2801400 2870200 3306700 2473000 3348600 1 1 1 1 1 1 1 1 1 1 1 727720000 500220000 227500000 591 712 560 3280;3281;3282;3283;3284 3961;3962;3963;3964;3965 3961 5 AFHPDLEFVGK Unmodified 1258.6346 0.63462279 450 O95864;O95864-3;O95864-4;O95864-2 FADS2 Fatty acid desaturase 2 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 57.016 57.14 3 8.8081E-06 17547 20211116_3433_TMUAki_TMT10x_P_F5 108.7 93.309 19131000 29976000 250650 33082000 19660000 20627000 16923000 14747000 14282000 14201000 19924000 17815000 27983000 1827100 33344000 18797000 21649000 17227000 15274000 14845000 13892000 19045000 3 3 3 3 3 3 3 3 3 3 3 5436600 8291800 33192 8919300 5573500 7518400 4670100 3691300 3379600 3613500 5642500 5062200 7739500 483580 9033800 5323500 7659700 4744300 3943900 3574900 3532300 5373100 1 1 1 1 1 1 1 1 1 1 1 13695000 21685000 217450 24163000 14087000 13108000 12253000 11056000 10902000 10588000 14282000 12753000 20243000 1343500 24310000 13474000 13990000 12483000 11330000 11270000 10360000 13672000 2 2 2 2 2 2 2 2 2 2 2 1321500000 444200000 877250000 592 450 561 3285;3286 3966;3967;3968 3966 3 AFHPFIAGPYNR Unmodified 1388.699 0.69895438 1467 Q00341;Q00341-2 HDLBP Vigilin yes no 0 0 0 0 By MS/MS 3 0 1 1 48.411 48.058 3 0.00014674 16327 20211116_3441_TMUAki_TMT10x_S_F3 88.948 65.722 1126000 1853200 0 1961300 1123000 949360 899510 1578200 1394800 1231600 1536200 1048300 1729600 86856 1978100 1070700 1043700 939430 1562500 1402400 1217100 1477500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1126000 1853200 0 1961300 1123000 949360 899510 1578200 1394800 1231600 1536200 1048300 1729600 86856 1978100 1070700 1043700 939430 1562500 1402400 1217100 1477500 1 1 0 1 1 1 1 1 1 1 1 99193000 0 99193000 593 1467 562 3287 3969 3969 1 AFIAHFQDNLHSVNR Unmodified 1767.8805 0.88050057 1994 Q6P2C8;Q6P2C8-4;Q6P2C8-2 MED27 Mediator of RNA polymerase II transcription subunit 27 yes no 0 0 0 0 By MS/MS 2 0 1 1 45.772 45.744 4 3.3028E-14 12533 20211116_3440_TMUAki_TMT10x_S_F2 145.92 136.47 681190 1182000 0 1241000 653030 595100 511520 925490 936640 860790 1029100 634250 1103100 55510 1252200 622560 653510 539410 922360 937550 843360 989910 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 681190 1182000 0 1241000 653030 595100 511520 925490 936640 860790 1029100 634250 1103100 55510 1252200 622560 653510 539410 922360 937550 843360 989910 1 1 0 1 1 1 1 1 1 1 1 341760000 0 341760000 594 1994 563 3288 3970 3970 1 AFIITGQTYTR Unmodified 1269.6717 0.67173657 875 P30566;P30566-2 ADSL Adenylosuccinate lyase yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 3 3 2 4 53 52.76 2;3 1.27E-14 18262 20211116_3441_TMUAki_TMT10x_S_F3 193.01 129.85 11605000 18576000 0 19875000 16141000 19580000 13090000 15819000 14393000 14373000 15486000 10804000 17338000 837920 20180000 15388000 19880000 13477000 16230000 14624000 14097000 14905000 4 4 0 4 4 4 4 4 4 4 4 6046900 9104800 0 10504000 10214000 14514000 8119000 8317600 7540300 7402000 7839900 5629600 8500900 477900 10677000 9736100 14399000 8327100 8742100 7707000 7266900 7553600 2 2 0 2 2 2 2 2 2 2 2 5558300 9471000 0 9371100 5926600 5065600 4970600 7501200 6852500 6971000 7646600 5174500 8837100 360020 9502800 5651800 5480800 5150100 7487900 6917100 6830100 7351800 2 2 0 2 2 2 2 2 2 2 2 2658700000 1461200000 1197500000 595 875 564 3289;3290;3291;3292;3293;3294 3971;3972;3973;3974;3975;3976 3975 6 AFIPAIDSFGFETDLR Unmodified 1797.8938 0.8937506 1757 Q15029;Q15029-2;Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 By MS/MS By MS/MS 5.8 1.38 4 2 4 3 2 6 9 80.058 80.064 2;3 9.7811E-43 25751 20211116_3434_TMUAki_TMT10x_P_F6 231.67 193.32 20923000 34323000 204320 32325000 22726000 31408000 24777000 19205000 19052000 20495000 24860000 19481000 32020000 1784500 33104000 21844000 31779000 24848000 20181000 19839000 19963000 23802000 11 11 5 11 11 11 11 11 11 11 11 11405000 18152000 174640 17205000 10701000 20342000 12584000 10436000 10160000 11308000 13435000 10620000 16934000 1019600 17666000 10313000 20307000 12591000 11137000 10558000 11008000 12859000 6 6 4 6 6 6 6 6 6 6 6 9517700 16172000 29682 15120000 12025000 11066000 12193000 8769100 8892300 9187100 11425000 8861500 15086000 764830 15438000 11530000 11472000 12257000 9044200 9280800 8955400 10943000 5 5 1 5 5 5 5 5 5 5 5 7524600000 3418900000 4105700000 596 1757 565 3295;3296;3297;3298;3299;3300;3301;3302;3303;3304;3305;3306;3307;3308;3309 3977;3978;3979;3980;3981;3982;3983;3984;3985;3986;3987;3988;3989 3980 13 AFIRPFR Unmodified 905.52356 0.5235562 11 A5PLL7 TMEM189 Transmembrane protein 189 yes yes 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 39.603 39.766 3 0.0029599 9672 20211116_3445_TMUAki_TMT10x_S_F6 107.74 59.571 185020 256660 6134.3 305440 120330 185810 174030 142040 141000 160110 181670 172320 239670 20151 306370 117100 195680 172690 147170 146330 155630 173990 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 185020 256660 6134.3 305440 120330 185810 174030 142040 141000 160110 181670 172320 239670 20151 306370 117100 195680 172690 147170 146330 155630 173990 1 1 1 1 1 1 1 1 1 1 1 31374000 0 31374000 597 11 566 3310;3311 3990;3991 3990 2 AFITNIPFDVK Unmodified 1263.6863 0.68632401 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS By MS/MS 4.23 2.94 3 4 1 2 3 7 6 71.907 71.879 2;3 2.2736E-23 25073 20211116_3428_TMUAki_TMT10x_P_F1 247.22 183.41 173980000 257910000 438150 303330000 114110000 206730000 178140000 97901000 148600000 148330000 177990000 161990000 240830000 12739000 304800000 110970000 214120000 176430000 106540000 153510000 142790000 170790000 10 10 4 10 10 10 10 10 10 10 10 94904000 136500000 90599 161780000 74085000 126860000 83978000 52740000 78769000 80918000 94180000 88360000 127470000 6979700 162730000 71247000 129720000 84504000 58206000 80909000 77867000 90375000 6 6 2 6 6 6 6 6 6 6 6 79076000 121410000 347550 141560000 40024000 79874000 94160000 45162000 69835000 67416000 83812000 73626000 113360000 5759000 142070000 39721000 84395000 91927000 48335000 72606000 64925000 80418000 4 4 2 4 4 4 4 4 4 4 4 25189000000 13667000000 11522000000 598 1171 567 3312;3313;3314;3315;3316;3317;3318;3319;3320;3321;3322;3323;3324 3992;3993;3994;3995;3996;3997;3998;3999;4000;4001;4002;4003 3992 12 AFITNIPFDVKWQSLKDLVK Unmodified 2361.3097 0.30965383 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 2 By MS/MS By matching 6.67 0.471 1 2 2 1 79.173 79.195 4 6.0347E-18 27510 20211116_3435_TMUAki_TMT10x_P_F7 147.9 132.64 16770000 27615000 0 20025000 21015000 26768000 24565000 9108000 6481500 11085000 15416000 15614000 25740000 1411700 21066000 20237000 26457000 24172000 10211000 7702100 10745000 14594000 2 2 0 2 2 2 2 2 2 2 2 16770000 27615000 0 20025000 21015000 26768000 24565000 9108000 6481500 11085000 15416000 15614000 25740000 1411700 21066000 20237000 26457000 24172000 10211000 7702100 10745000 14594000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3381500000 1770800000 1610700000 599 1171 568 3325;3326;3327 4004;4005 4004 2 AFKDEYMVNLVR Unmodified 1483.7493 0.74933497 3021 Q9NYK5;Q9NYK5-2 MRPL39 39S ribosomal protein L39, mitochondrial yes no 0 0 0 1 By MS/MS 8 0 1 1 58.059 58.036 3 0.071525 16830 20211116_3447_TMUAki_TMT10x_S_F8 39.364 18.701 5206300 9231700 100840 9025800 6272500 4655100 4979700 6256300 5432700 5399700 6582300 4848300 8613400 540540 9156900 5988000 5047900 5132800 6254500 5547800 5309000 6314100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5206300 9231700 100840 9025800 6272500 4655100 4979700 6256300 5432700 5399700 6582300 4848300 8613400 540540 9156900 5988000 5047900 5132800 6254500 5547800 5309000 6314100 1 1 1 1 1 1 1 1 1 1 1 215350000 0 215350000 600 3021 569 3328 4006 4006 1 AFKDIDIEDLEELDPDFIMAK Oxidation (M) 2482.1825 0.18252356 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 1 1 By MS/MS By matching 1.5 0.5 1 1 1 1 79.559 79.547 4 6.5809E-05 26133 20211116_3428_TMUAki_TMT10x_P_F1 72.443 57.022 1245600 2292100 35077 2173100 1291200 2828900 1786200 1685900 1597100 1714400 1912000 1160100 2138300 136600 2235100 1252700 2815700 1780100 1772600 1644200 1673200 1834700 1 1 1 1 1 1 1 1 1 1 1 1245600 2292100 35077 2173100 1291200 2828900 1786200 1685900 1597100 1714400 1912000 1160100 2138300 136600 2235100 1252700 2815700 1780100 1772600 1644200 1673200 1834700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1243100000 669190000 573890000 601 1684 570 3329;3330 4007 4007 2247 1 AFLADPSAFVAAAPVAAATTAAPAAAAAPAK Unmodified 2751.4596 0.45956554 508 P05388;P05388-2 RPLP0 60S acidic ribosomal protein P0 yes no 0 0 0 0 By MS/MS By MS/MS 3.04 1.43 1 9 13 3 1 1 14 14 59.738 59.695 2;3;4 2.4141E-37 26073 20211116_3440_TMUAki_TMT10x_S_F2 179.81 167.25 48806000 91196000 460740 85295000 48721000 69170000 64669000 39767000 41210000 46272000 54337000 45445000 85073000 2640000 87190000 47134000 70800000 64037000 42111000 43417000 44924000 52011000 32 32 15 32 32 32 32 32 32 32 32 27064000 44347000 176550 40337000 22081000 42683000 33700000 18117000 17555000 24666000 27284000 25199000 41365000 1062200 41468000 21467000 42786000 33076000 19856000 18911000 23820000 26019000 11 11 5 11 11 11 11 11 11 11 11 21742000 46849000 284180 44958000 26640000 26487000 30969000 21649000 23655000 21606000 27053000 20246000 43708000 1577800 45722000 25667000 28014000 30961000 22254000 24506000 21103000 25992000 21 21 10 21 21 21 21 21 21 21 21 57244000000 30181000000 27063000000 602 508 572 3331;3332;3333;3334;3335;3336;3337;3338;3339;3340;3341;3342;3343;3344;3345;3346;3347;3348;3349;3350;3351;3352;3353;3354;3355;3356;3357;3358 4008;4009;4010;4011;4012;4013;4014;4015;4016;4017;4018;4019;4020;4021;4022;4023;4024;4025;4026;4027;4028;4029;4030;4031;4032;4033;4034;4035;4036 4017 29 AFLASPEYVNLPINGNGK Unmodified 1902.984 0.98396259 571 P09211 GSTP1 Glutathione S-transferase P yes yes 0 0 0 0 By MS/MS By MS/MS 5 3.29 2 1 2 3 2 74.613 74.562 3 2.9108E-12 23626 20211116_3447_TMUAki_TMT10x_S_F8 131.86 112.54 29648000 51716000 407820 49784000 28767000 44088000 36631000 27465000 29084000 30920000 36820000 27608000 48250000 2778800 50839000 27803000 44891000 36512000 28867000 30193000 30056000 35279000 6 6 5 6 6 6 6 6 6 6 6 9288300 16444000 53014 15739000 9768700 17978000 11666000 8620600 9998000 9884600 12055000 8648400 15341000 779270 16140000 9414600 17967000 11682000 9274900 10317000 9601700 11565000 2 2 1 2 2 2 2 2 2 2 2 20360000 35273000 354810 34045000 18999000 26109000 24965000 18845000 19086000 21035000 24765000 18960000 32909000 1999600 34699000 18388000 26925000 24829000 19592000 19875000 20454000 23714000 4 4 4 4 4 4 4 4 4 4 4 3025300000 1686500000 1338700000 603 571 574 3359;3360;3361;3362;3363 4037;4038;4039;4040;4041;4042;4043 4043 7 AFLASPEYVNLPINGNGKQ Unmodified 2031.0425 0.042540102 571 P09211 GSTP1 Glutathione S-transferase P yes yes 0 0 0 1 By MS/MS By MS/MS 5.69 3 3 1 3 6 6 7 73.739 73.753 2;3;4 1.6039E-53 25682 20211116_3439_TMUAki_TMT10x_S_F1 221.55 182.91 51177000 85493000 288250 73903000 53304000 77086000 59682000 51809000 57457000 58038000 64259000 47652000 79731000 3911400 76259000 51280000 77765000 60136000 54138000 58791000 56427000 61778000 16 16 10 16 16 16 16 16 16 16 16 24429000 38950000 159120 33460000 22467000 45528000 26742000 23885000 27420000 26433000 28755000 22746000 36324000 1551400 34703000 21654000 45150000 26923000 25453000 27913000 25711000 27697000 7 7 3 7 7 7 7 7 7 7 7 26748000 46543000 129130 40443000 30837000 31558000 32940000 27924000 30037000 31605000 35504000 24905000 43407000 2360000 41556000 29626000 32615000 33213000 28685000 30879000 30716000 34080000 9 9 7 9 9 9 9 9 9 9 9 19355000000 11765000000 7590100000 604 571 575 3364;3365;3366;3367;3368;3369;3370;3371;3372;3373;3374;3375;3376 4044;4045;4046;4047;4048;4049;4050;4051;4052;4053;4054;4055;4056;4057;4058;4059;4060 4053 17 AFLDALQNQAEASSK Unmodified 1591.7842 0.78420015 1578 Q12931;Q12931-2 TRAP1 Heat shock protein 75 kDa, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 6.78 0.916 1 2 4 2 5 4 69.393 69.565 2;3 1.1801E-43 23880 20211116_3446_TMUAki_TMT10x_S_F7 269.2 240.46 59869000 95894000 1018700 105240000 74916000 91036000 70027000 63933000 51586000 57051000 74019000 55751000 89514000 6044300 106490000 71767000 93009000 70716000 66165000 54083000 56003000 70709000 9 9 8 9 9 9 9 9 9 9 9 36382000 55945000 437220 61357000 47026000 70017000 46645000 36582000 32191000 33152000 42928000 33878000 52223000 3493500 62342000 45102000 70043000 46886000 38778000 33762000 32519000 41079000 5 5 4 5 5 5 5 5 5 5 5 23487000 39948000 581470 43885000 27891000 21019000 23382000 27351000 19396000 23900000 31091000 21873000 37291000 2550800 44150000 26665000 22966000 23830000 27386000 20321000 23484000 29630000 4 4 4 4 4 4 4 4 4 4 4 7921300000 4220000000 3701300000 605 1578 576 3377;3378;3379;3380;3381;3382;3383;3384;3385 4061;4062;4063;4064;4065;4066;4067;4068;4069;4070 4070 10 AFLDFHALPYQVVEVNPVRR Unmodified 2369.2644 0.26443497 2827 Q9H7Z7 PTGES2 Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form yes yes 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 72.262 72.007 4 4.1283E-51 26143 20211116_3441_TMUAki_TMT10x_S_F3 219.79 197.36 3871700 7125800 86264 6286200 5306000 4093900 4890500 3535200 2948100 3489200 4631400 3605400 6646000 400490 6439500 5081100 4293300 4922200 3621200 3143900 3409600 4415600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3871700 7125800 86264 6286200 5306000 4093900 4890500 3535200 2948100 3489200 4631400 3605400 6646000 400490 6439500 5081100 4293300 4922200 3621200 3143900 3409600 4415600 2 2 1 2 2 2 2 2 2 2 2 1113300000 0 1113300000 606 2827 577 3386;3387 4071;4072 4072 2 AFLDNPGILSELCGTLSR Unmodified 1961.9881 0.98806169 1986 Q6NXE6;Q6NXE6-2 ARMC6 Armadillo repeat-containing protein 6 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 3 2 1 79.805 79.8 3 2.4281E-17 25728 20211116_3447_TMUAki_TMT10x_S_F8 143.99 124.67 3181500 4899300 42643 4926800 3194500 4450300 3760900 2457400 2149300 3059400 3286900 2962600 4571700 303690 5017000 3079800 4518300 3735300 2617100 2297400 2963200 3135500 2 2 2 2 2 2 2 2 2 2 2 1963900 2917400 31246 3032200 1629900 3103300 2301500 1386900 1157400 1815300 1918600 1828800 2722700 187260 3086300 1581600 3118400 2264000 1509500 1254500 1755300 1827200 1 1 1 1 1 1 1 1 1 1 1 1217600 1981900 11398 1894500 1564500 1347000 1459300 1070500 991890 1244100 1368300 1133800 1849000 116430 1930700 1498200 1399800 1471300 1107600 1042900 1207900 1308300 1 1 1 1 1 1 1 1 1 1 1 809420000 595730000 213690000 607 1986 578 3388;3389;3390 4073;4074;4075 4075 3 AFLDSLPDVK Unmodified 1103.5863 0.58627561 180 O15294;O15294-3;O15294-2;O15294-4 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes no 0 0 0 0 By MS/MS 6 0 1 1 70.187 70.137 2 7.1071E-05 21723 20211116_3434_TMUAki_TMT10x_P_F6 99.802 62.327 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 608 180 579 3391 4076 4076 1 AFLEENNLDYIIR Unmodified 1608.8148 0.814772 1197 P53041 PPP5C Serine/threonine-protein phosphatase 5 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.756 2 3 2 3 4 75.79 75.729 2;3 3.3669E-24 25160 20211116_3433_TMUAki_TMT10x_P_F5 196.16 147.97 20753000 35806000 90618 32870000 27608000 26377000 25969000 20231000 20262000 21652000 26786000 19323000 33400000 1765700 33643000 26427000 27134000 26250000 20922000 21095000 21088000 25638000 9 9 4 9 9 9 9 9 9 9 9 4767600 8121100 18880 7806300 5100100 8914700 5895600 4311900 4443100 4610300 5925900 4439000 7576600 385960 8002500 4909300 8909900 5893600 4625300 4636200 4490300 5670600 2 2 1 2 2 2 2 2 2 2 2 15986000 27685000 71738 25064000 22507000 17463000 20073000 15919000 15819000 17042000 20860000 14884000 25823000 1379700 25641000 21518000 18224000 20357000 16297000 16458000 16598000 19967000 7 7 3 7 7 7 7 7 7 7 7 1499500000 735940000 763540000 609 1197 580 3392;3393;3394;3395;3396;3397;3398 4077;4078;4079;4080;4081;4082;4083;4084;4085;4086;4087 4079 11 AFLIEEQK Unmodified 976.52295 0.52294707 1089 P49207 RPL34 60S ribosomal protein L34 yes yes 0 0 0 0 By MS/MS By MS/MS 4.29 1.03 2 2 2 1 3 4 53.965 53.966 2 0.00043538 18808 20211116_3441_TMUAki_TMT10x_S_F3 148.38 86.42 63901000 99060000 323840 118470000 101680000 85122000 64356000 75145000 76008000 67634000 86941000 59499000 92506000 5841100 118990000 96556000 88549000 67591000 76681000 77203000 66364000 83530000 8 8 4 8 8 8 8 8 8 8 8 26042000 38116000 77322 46700000 64762000 54399000 31043000 28184000 28974000 25487000 33173000 24248000 35599000 2744700 47151000 61252000 54354000 33187000 29898000 29715000 25003000 31871000 3 3 2 3 3 3 3 3 3 3 3 37859000 60944000 246520 71768000 36915000 30723000 33313000 46961000 47034000 42146000 53768000 35250000 56908000 3096500 71837000 35304000 34195000 34404000 46783000 47487000 41361000 51660000 5 5 2 5 5 5 5 5 5 5 5 4022200000 2625100000 1397100000 610 1089 581 3399;3400;3401;3402;3403;3404;3405 4088;4089;4090;4091;4092;4093;4094;4095;4096 4091 9 AFLPLLK Unmodified 800.51601 0.5160112 1726 Q14690 PDCD11 Protein RRP5 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 73.136 73.182 2 0.0024249 23898 20211116_3431_TMUAki_TMT10x_P_F4 126.05 77.804 10208000 15134000 0 14869000 13263000 22407000 12589000 13936000 13113000 14186000 14192000 9501400 14121000 474290 15300000 12673000 22172000 12821000 14604000 13356000 13844000 13657000 1 1 0 1 1 1 1 1 1 1 1 10208000 15134000 0 14869000 13263000 22407000 12589000 13936000 13113000 14186000 14192000 9501400 14121000 474290 15300000 12673000 22172000 12821000 14604000 13356000 13844000 13657000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 647000000 647000000 0 611 1726 582 3406;3407;3408;3409;3410 4097;4098;4099;4100;4101 4097 5 AFLQAILEHEEQDEEEDEVPDDETVNQMIAR Oxidation (M) 3657.6264 0.62644504 1154 P51532-5;P51532-2;P51532-3;P51532-4 SMARCA4 Transcription activator BRG1 yes no 0 0 1 0 By MS/MS By MS/MS 1 0 3 1 2 77.748 77.713 3;4 4.9784E-15 25354 20211116_3428_TMUAki_TMT10x_P_F1 104.24 99.48 4319000 7335000 140060 6338500 5203500 6693200 5436500 4865700 5077600 5104100 5971400 4022400 6840600 499370 6542000 5003600 6755600 5491200 5046400 5213000 4975100 5732700 3 3 2 3 3 3 3 3 3 3 3 1779700 2960600 57023 2375800 1821300 3295900 2086600 1863700 1932000 2493600 2511300 1657500 2760400 201280 2478800 1756400 3268700 2097900 1986000 1992800 2409500 2404600 1 1 1 1 1 1 1 1 1 1 1 2539200 4374400 83035 3962700 3382300 3397200 3349900 3001900 3145600 2610500 3460100 2364900 4080300 298090 4063200 3247200 3486900 3393300 3060400 3220200 2565700 3328100 2 2 1 2 2 2 2 2 2 2 2 1877300000 763440000 1113900000 612 1154 583 3411;3412;3413 4102;4103;4104 4102 1537 3 AFLQGGQEATDIALLLR Unmodified 1814.989 0.98904797 1694 Q14203;Q14203-6;Q14203-3;Q14203-4;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 By MS/MS 7 0 1 1 79.443 79.483 3 8.4416E-05 28031 20211116_3446_TMUAki_TMT10x_S_F7 79.393 64.698 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 613 1694 584 3414 4105 4105 1 AFLTGVDPILGHQLSAR Unmodified 1793.9788 0.97881763 2004 Q6P9B9 INTS5 Integrator complex subunit 5 yes yes 0 0 0 0 By MS/MS 2 0 1 1 66.917 66.701 3 1.4745E-05 21091 20211116_3440_TMUAki_TMT10x_S_F2 89.502 61.205 5321800 9789600 29560 8930900 6838200 6292000 6737700 7559500 7272900 7613300 7834500 4954900 9131500 431900 9132100 6552200 6601100 6856200 7623600 7395400 7433400 7540200 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5321800 9789600 29560 8930900 6838200 6292000 6737700 7559500 7272900 7613300 7834500 4954900 9131500 431900 9132100 6552200 6601100 6856200 7623600 7395400 7433400 7540200 3 3 2 3 3 3 3 3 3 3 3 211090000 0 211090000 614 2004 585 3415 4106;4107;4108 4107 3 AFLTLAEDILR Unmodified 1260.7078 0.70778773 1290 P61026 RAB10 Ras-related protein Rab-10 yes yes 0 0 0 0 By MS/MS By MS/MS 6.11 1.45 2 1 2 2 2 4 5 81.498 81.503 2 3.1069E-14 28446 20211116_3435_TMUAki_TMT10x_P_F7 182.76 123.85 14716000 23895000 76985 21803000 17793000 19572000 17555000 13490000 13769000 14255000 17763000 13702000 22289000 1290900 22357000 17056000 19939000 17702000 14045000 14315000 13890000 17011000 9 9 4 9 9 9 9 9 9 9 9 5571500 8614800 43069 7976800 5697500 9980600 5946100 5312100 5658700 5608300 6953900 5187900 8036200 495750 8212600 5471300 9939000 6009500 5645400 5815300 5465200 6668100 3 3 1 3 3 3 3 3 3 3 3 9144500 15280000 33917 13827000 12095000 9591100 11609000 8177800 8110000 8646200 10809000 8514400 14252000 795190 14145000 11585000 10000000 11692000 8400000 8499400 8425000 10343000 6 6 3 6 6 6 6 6 6 6 6 1532200000 550350000 981830000 615 1290 586 3416;3417;3418;3419;3420;3421;3422;3423;3424 4109;4110;4111;4112;4113;4114;4115;4116;4117 4110 9 AFMTADLPNELIELLEK Oxidation (M) 1962.002 0.00198042 1471 Q00610;Q00610-2;P53675;P53675-2 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 1 0 By MS/MS By MS/MS 4.2 1.33 1 2 1 1 2 3 82.488 82.492 3 1.5559E-15 27688 20211116_3431_TMUAki_TMT10x_P_F4 148.24 127.01 20792000 34087000 74479 31345000 20519000 31944000 25100000 15665000 18980000 20196000 23250000 19358000 31796000 828270 32180000 19783000 32140000 25031000 16885000 19729000 19538000 22296000 5 5 1 5 5 5 5 5 5 5 5 13107000 21588000 74479 19447000 11571000 23081000 15097000 9319300 11976000 12562000 14083000 12204000 20135000 338620 20045000 11188000 22980000 15032000 10267000 12394000 12135000 13520000 2 2 1 2 2 2 2 2 2 2 2 7684900 12499000 0 11898000 8948000 8862700 10003000 6345900 7004800 7633800 9167300 7154000 11661000 489660 12135000 8595600 9159400 9998300 6617700 7334100 7402500 8776400 3 3 0 3 3 3 3 3 3 3 3 2753900000 1167000000 1586900000 616 1471 587 3425;3426;3427;3428;3429 4118;4119;4120;4121 4118 1974 4 AFNDPFIQK Unmodified 1078.5447 0.54474515 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 0 By MS/MS By MS/MS 6.4 0.917 2 3 4 1 4 6 64.593 64.701 2;3 4.8011E-05 17831 20211116_3444_TMUAki_TMT10x_S_F5 149.72 86.155 47040000 75276000 845970 85062000 74995000 94451000 58700000 67540000 70761000 63091000 69183000 43803000 70277000 4902700 86227000 71539000 95036000 60768000 69895000 71403000 61801000 66787000 14 14 8 14 14 14 14 14 14 14 14 31642000 48998000 793890 55617000 60491000 80549000 45785000 45588000 47904000 42138000 45974000 29467000 45745000 3673400 56644000 57673000 79734000 47276000 48012000 48573000 41296000 44409000 4 4 3 4 4 4 4 4 4 4 4 15397000 26278000 52081 29445000 14504000 13902000 12915000 21952000 22857000 20953000 23209000 14336000 24532000 1229300 29583000 13865000 15302000 13491000 21883000 22830000 20505000 22378000 10 10 5 10 10 10 10 10 10 10 10 7798100000 4526000000 3272100000 617 2345 588 3430;3431;3432;3433;3434;3435;3436;3437;3438;3439 4122;4123;4124;4125;4126;4127;4128;4129;4130;4131;4132;4133;4134;4135;4136 4127 15 AFNSSSFNSNTFLTR Unmodified 1691.7903 0.79034816 1040 P46060 RANGAP1 Ran GTPase-activating protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.75 0.433 1 3 2 2 60.828 60.455 2;3 1.663E-85 21405 20211116_3441_TMUAki_TMT10x_S_F3 350.43 330.67 10598000 18256000 56426 17783000 10861000 14010000 11049000 11793000 11917000 12235000 13811000 9867900 17033000 902590 18118000 10420000 14455000 11224000 12115000 12153000 11931000 13264000 4 4 2 4 4 4 4 4 4 4 4 3605800 5404100 0 5097200 4181400 7105500 4484400 3829700 3884400 3761800 4298900 3357200 5041500 283790 5251600 4015400 7041200 4514300 4057100 3992700 3676800 4134200 1 1 0 1 1 1 1 1 1 1 1 6992100 12851000 56426 12685000 6679300 6904000 6564200 7963100 8032800 8473200 9511900 6510700 11991000 618810 12866000 6404300 7413700 6709800 8058200 8160200 8254400 9130000 3 3 2 3 3 3 3 3 3 3 3 2268800000 749550000 1519200000 618 1040 589 3440;3441;3442;3443 4137;4138;4139;4140;4141 4139 5 AFPEHLYQR Unmodified 1159.5774 0.57744226 1691 Q14194-2;Q14194 CRMP1 Dihydropyrimidinase-related protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.6 0.49 2 3 4 1 35.732 35.768 3 1.0686E-05 7349 20211116_3434_TMUAki_TMT10x_P_F6 109.11 89.348 530880 842140 15392 989390 645460 621830 537810 692950 642750 683770 763070 494410 786360 59963 993450 617130 657750 554400 700680 653560 668190 732380 4 4 4 4 4 4 4 4 4 4 4 167600 267010 8560.6 296070 323110 334450 217440 162530 169320 155860 217360 156110 249260 24051 300560 307670 334480 224600 173730 176070 152490 208190 3 3 3 3 3 3 3 3 3 3 3 363280 575130 6831.5 693320 322360 287380 320360 530420 473420 527920 545700 338300 537100 35912 692880 309450 323270 329800 526950 477490 515690 524180 1 1 1 1 1 1 1 1 1 1 1 80260000 55197000 25063000 619 1691 590 3444;3445;3446;3447;3448 4142;4143;4144;4145;4146;4147 4145 6 AFPLQCIHIAEGHTK Unmodified 1720.8719 0.87190972 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4;Q7Z4S6-6 KIF21A Kinesin-like protein KIF21A yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 48.538 48.806 4 3.3733E-14 13657 20211116_3436_TMUAki_TMT10x_P_F8 145.61 132.48 49290000 80844000 292480 107080000 84453000 80070000 47226000 50465000 52999000 49771000 63905000 45893000 75534000 2813100 106990000 80036000 82571000 50029000 52783000 54052000 48637000 61309000 8 8 2 8 8 8 8 8 8 8 8 29612000 44326000 70097 59074000 65084000 64822000 33813000 27155000 28645000 24973000 36926000 27570000 41416000 1995200 59309000 61602000 64835000 35773000 29445000 29662000 24480000 35365000 4 4 1 4 4 4 4 4 4 4 4 19678000 36518000 222390 48011000 19369000 15248000 13413000 23311000 24354000 24797000 26979000 18323000 34118000 817920 47678000 18435000 17736000 14256000 23338000 24390000 24157000 25945000 4 4 1 4 4 4 4 4 4 4 4 5145600000 2982100000 2163500000 620 2082 591 3449;3450;3451;3452 4148;4149;4150;4151;4152;4153;4154 4151 7 AFPMPGFDEH Oxidation (M) 1162.4753 0.47534495 915 P34897;P34897-3;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 3.5 1.12 2 2 2 2 4 4 50.107 50.087 2 0.00019348 17111 20211116_3441_TMUAki_TMT10x_S_F3 120.65 117.97 31644000 55576000 384820 53952000 48938000 62934000 36729000 58304000 58718000 50011000 53255000 29466000 51852000 3163300 55289000 46636000 63455000 38575000 59265000 58580000 49185000 51542000 12 12 11 12 12 12 12 12 12 12 12 14744000 24498000 141540 22788000 30701000 44555000 21469000 26857000 26543000 22737000 23433000 13729000 22853000 1516800 23694000 29210000 43649000 22417000 28076000 26671000 22376000 22702000 5 5 4 5 5 5 5 5 5 5 5 16900000 31078000 243280 31163000 18237000 18380000 15260000 31447000 32175000 27274000 29821000 15737000 28999000 1646600 31594000 17426000 19806000 16158000 31189000 31909000 26809000 28840000 7 7 7 7 7 7 7 7 7 7 7 5265300000 2749600000 2515700000 621 915 592 3453;3454;3455;3456;3457;3458;3459;3460 4155;4156;4157;4158;4159;4160;4161;4162;4163;4164;4165;4166 4163 1144 12 AFPMPGFDEH Unmodified 1146.4804 0.48043033 915 P34897;P34897-3;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 3.83 0.898 3 1 2 3 3 64.209 64.221 2 1.0739E-09 21945 20211116_3430_TMUAki_TMT10x_P_F3 164.24 156.3 26235000 43794000 226970 44940000 33338000 32489000 29542000 24645000 21707000 25036000 32233000 24428000 40869000 2384000 45579000 31878000 33689000 29921000 25465000 22800000 24436000 30768000 7 7 3 7 7 7 7 7 7 7 7 7586400 12426000 204570 13010000 9781200 14674000 9562600 7309900 6680400 7792900 9140500 7065200 11597000 850350 13256000 9385600 14680000 9622000 7818300 7009600 7591100 8741400 2 2 2 2 2 2 2 2 2 2 2 18648000 31368000 22401 31930000 23557000 17815000 19979000 17335000 15027000 17244000 23092000 17363000 29271000 1533600 32323000 22493000 19009000 20299000 17646000 15790000 16845000 22027000 5 5 1 5 5 5 5 5 5 5 5 1322600000 420010000 902620000 622 915 592 3461;3462;3463;3464;3465;3466 4167;4168;4169;4170;4171;4172;4173;4174;4175;4176 4168 10 AFPNPYADYNK Unmodified 1298.5932 0.5931519 247 O43813 LANCL1 LanC-like protein 1 yes yes 0 0 0 0 By MS/MS 7 0 1 1 54.318 54.838 3 0.0073365 17769 20211116_3446_TMUAki_TMT10x_S_F7 61.165 45.625 3869900 6060000 0 7567700 3073300 2715300 2699200 4324000 3747200 3343600 4715100 3602900 5660300 260200 7541200 2934200 3101700 2789900 4285900 3800600 3306000 4518500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3869900 6060000 0 7567700 3073300 2715300 2699200 4324000 3747200 3343600 4715100 3602900 5660300 260200 7541200 2934200 3101700 2789900 4285900 3800600 3306000 4518500 1 1 0 1 1 1 1 1 1 1 1 226070000 0 226070000 623 247 593 3467 4177 4177 1 AFPPGADGAELAPRPGPR Unmodified 1774.9115 0.91146635 2144 Q8IWD4;Q8IWD4-4;Q8IWD4-3 CCDC117 Coiled-coil domain-containing protein 117 yes no 0 0 0 1 By MS/MS 6.67 0.471 1 2 3 42.29 42.661 3 2.2657E-06 10845 20211116_3445_TMUAki_TMT10x_S_F6 98.508 82.968 942380 1527900 37804 1956100 680780 683700 631860 1275700 1353500 1127600 1426400 877730 1427300 109700 1946300 653830 788300 665820 1262800 1347900 1107400 1373800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 942380 1527900 37804 1956100 680780 683700 631860 1275700 1353500 1127600 1426400 877730 1427300 109700 1946300 653830 788300 665820 1262800 1347900 1107400 1373800 1 1 1 1 1 1 1 1 1 1 1 41463000 0 41463000 624 2144 594 3468;3469;3470 4178;4179 4178 2 AFQQSVEQDNLFDISTEEGSTK Unmodified 2472.1292 0.12924244 1726 Q14690 PDCD11 Protein RRP5 homolog yes yes 0 0 0 0 By MS/MS 1.5 0.5 1 1 2 72.262 72.142 3 1.9098E-06 25023 20211116_3439_TMUAki_TMT10x_S_F1 82.267 69.079 1400400 2602600 28770 2390500 2066500 1762400 1833500 1761300 1969100 1837000 2159600 1304100 2427700 152240 2444300 1977300 1834100 1876200 1793100 2004000 1791000 2077400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1400400 2602600 28770 2390500 2066500 1762400 1833500 1761300 1969100 1837000 2159600 1304100 2427700 152240 2444300 1977300 1834100 1876200 1793100 2004000 1791000 2077400 1 1 1 1 1 1 1 1 1 1 1 529870000 0 529870000 625 1726 595 3471;3472 4180 4180 1 AFQYVETHGEVCPANWTPDSPTIKPSPAASK Unmodified 3384.6085 0.60849098 862 P30048;P30048-2 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 4 4 4 4 60.42 60.775 4;5 4.0451E-28 20213 20211116_3446_TMUAki_TMT10x_S_F7 159.59 148.48 118570000 203900000 1168300 220600000 145110000 145470000 126290000 104170000 97762000 103240000 145710000 110400000 190320000 8966500 222750000 138680000 151900000 128200000 107970000 102410000 100870000 139080000 16 16 9 16 16 16 16 16 16 16 16 41380000 66427000 545320 72220000 59595000 80406000 55404000 37339000 35849000 34993000 47903000 38529000 62005000 3693800 73389000 57038000 80440000 55813000 40067000 37754000 34273000 45837000 5 5 3 5 5 5 5 5 5 5 5 77188000 137470000 623010 148380000 85520000 65063000 70882000 66827000 61912000 68247000 97805000 71871000 128310000 5272600 149360000 81646000 71460000 72386000 67899000 64651000 66595000 93238000 11 11 6 11 11 11 11 11 11 11 11 31226000000 17902000000 13324000000 626 862 596 3473;3474;3475;3476;3477;3478;3479;3480 4181;4182;4183;4184;4185;4186;4187;4188;4189;4190;4191;4192;4193;4194;4195;4196 4188 16 AFREEAIK Unmodified 962.51853 0.5185304 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 34.511 34.563 3 0.00030106 8559 20211116_3433_TMUAki_TMT10x_P_F5 138.06 47.462 8497200 12506000 161710 14308000 10250000 13828000 6979800 6163400 6769400 6884100 9670900 7913000 11676000 879730 14462000 9755300 13944000 7244400 6674900 6998900 6693600 9239300 4 4 4 4 4 4 4 4 4 4 4 7393200 10772000 145740 12323000 9371500 12942000 5613800 5335800 5855100 6005200 8325300 6884900 10057000 776480 12471000 8900100 12975000 5898200 5829000 6033600 5837400 7954600 3 3 3 3 3 3 3 3 3 3 3 1104000 1734000 15966 1985300 878050 885960 1366100 827560 914330 878830 1345600 1028100 1618900 103250 1991100 855150 969050 1346200 845890 965250 856200 1284700 1 1 1 1 1 1 1 1 1 1 1 478080000 403520000 74559000 627 648 597 3481;3482;3483 4197;4198;4199;4200 4199 4 AFREEAIKFSEEQR Unmodified 1738.8638 0.86384745 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 2 By MS/MS By MS/MS 3.83 1.21 2 3 3 3 1 7 5 42.75 42.774 3;4 1.4906E-23 10600 20211116_3444_TMUAki_TMT10x_S_F5 192.46 167.4 15685000 27907000 271350 24525000 28876000 37126000 21578000 34191000 35452000 31060000 28233000 14606000 26027000 1709600 25447000 27518000 36978000 22698000 34818000 35203000 30464000 27459000 13 13 11 13 13 13 13 13 13 13 13 9338200 16215000 202540 14275000 22686000 29080000 15634000 19610000 20490000 18078000 16372000 8696100 15123000 1121500 14921000 21586000 28499000 16377000 20370000 20486000 17719000 15921000 7 7 5 7 7 7 7 7 7 7 7 6346900 11691000 68809 10251000 6189200 8045800 5944000 14581000 14962000 12982000 11861000 5910100 10904000 588120 10526000 5932500 8479400 6321300 14448000 14717000 12745000 11538000 6 6 6 6 6 6 6 6 6 6 6 4059300000 2742100000 1317200000 628 648 598 3484;3485;3486;3487;3488;3489;3490;3491;3492;3493;3494;3495 4201;4202;4203;4204;4205;4206;4207;4208;4209;4210;4211;4212;4213 4212 13 AFSDPFVEAEK Unmodified 1238.5819 0.58191851 916 P34932;P34932-2 HSPA4 Heat shock 70 kDa protein 4 yes no 0 0 0 0 By MS/MS By MS/MS 3.13 1.15 1 4 4 4 2 8 7 63.079 62.909 2;3 3.6092E-23 21332 20211116_3430_TMUAki_TMT10x_P_F3 241.13 186.52 84496000 142220000 691680 154770000 115900000 143250000 96121000 111270000 119480000 109790000 117750000 78675000 132760000 7477600 156840000 110640000 145930000 99257000 114700000 120460000 107290000 113650000 17 17 6 17 17 17 17 17 17 17 17 44703000 73600000 172070 80089000 77272000 109330000 64157000 57555000 63537000 59343000 61093000 41622000 68701000 4043600 81683000 73754000 108410000 65743000 61184000 64579000 57884000 59010000 9 9 3 9 9 9 9 9 9 9 9 39793000 68624000 519610 74684000 38629000 33921000 31965000 53716000 55938000 50447000 56661000 37053000 64056000 3433900 75152000 36882000 37515000 33514000 53518000 55884000 49403000 54637000 8 8 3 8 8 8 8 8 8 8 8 10983000000 6230400000 4752200000 629 916 599 3496;3497;3498;3499;3500;3501;3502;3503;3504;3505;3506;3507;3508;3509;3510 4214;4215;4216;4217;4218;4219;4220;4221;4222;4223;4224;4225;4226;4227;4228;4229;4230;4231;4232 4219 19 AFSEVPDRAPDSRPEEALDSSR Unmodified 2430.1411 0.14114453 1898 Q4V9L6 TMEM119 Transmembrane protein 119 yes yes 0 0 0 2 By MS/MS 2.5 0.5 1 1 2 40.855 40.74 4 2.996E-19 13360 20211116_3441_TMUAki_TMT10x_S_F3 145.72 134.2 825020 1626700 33659 1942000 676960 664410 589150 1193800 1243900 1110500 1353300 768420 1519000 97696 1939800 648940 767550 622460 1184500 1240700 1088000 1302100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 825020 1626700 33659 1942000 676960 664410 589150 1193800 1243900 1110500 1353300 768420 1519000 97696 1939800 648940 767550 622460 1184500 1240700 1088000 1302100 2 2 2 2 2 2 2 2 2 2 2 170370000 0 170370000 630 1898 600 3511;3512 4233;4234 4234 2 AFSITQGLLK Unmodified 1076.623 0.62299547 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 0 By MS/MS 3 0 1 1 69.085 68.628 2 0.0065662 24772 20211116_3441_TMUAki_TMT10x_S_F3 73.887 48.06 4386600 8597500 0 7078300 6370200 5149300 4351000 6708400 6527500 6470300 6362800 4083500 8016700 275800 7299500 6049800 5399800 4586400 6734800 6539500 6329100 6143100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4386600 8597500 0 7078300 6370200 5149300 4351000 6708400 6527500 6470300 6362800 4083500 8016700 275800 7299500 6049800 5399800 4586400 6734800 6539500 6329100 6143100 1 1 0 1 1 1 1 1 1 1 1 478010000 0 478010000 631 157 601 3513 4235 4235 1 AFSPTTVNTGR Unmodified 1149.5778 0.57783619 1317 P61619;P61619-3 SEC61A1 Protein transport protein Sec61 subunit alpha isoform 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 34.29 34.65 2 2.0035E-11 7322 20211116_3447_TMUAki_TMT10x_S_F8 136.84 96.839 97530 159170 693.06 191160 303510 196760 113590 101180 106120 108120 142570 90801 148640 9799.1 192840 286170 197950 124920 107900 109580 105310 136400 2 2 1 2 2 2 2 2 2 2 2 97530 159170 693.06 191160 303510 196760 113590 101180 106120 108120 142570 90801 148640 9799.1 192840 286170 197950 124920 107900 109580 105310 136400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16391000 16391000 0 632 1317 602 3514;3515;3516 4236;4237;4238 4238 3 AFSQFGK Unmodified 783.39154 0.39153897 271;272 O60506;O60506-2;O60506-3;O60506-4;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 46.851 46.795 2 0.0071098 12728 20211116_3428_TMUAki_TMT10x_P_F1 139.31 98.367 5279000 8666200 109960 9062600 9518000 9658100 6630500 6652500 7725600 6250500 7654100 4916000 8088000 599510 9226200 9060300 9734700 6910500 6903400 7809000 6121200 7385800 2 2 2 2 2 2 2 2 2 2 2 3139400 4966000 88210 5235300 7682800 7738900 4505300 3829700 4285100 3573100 4362900 2923800 4634800 406120 5359200 7292100 7641600 4729300 4083400 4371800 3500200 4206300 1 1 1 1 1 1 1 1 1 1 1 2139500 3700200 21749 3827300 1835100 1919200 2125200 2822800 3440500 2677400 3291100 1992300 3453200 193390 3867000 1768200 2093100 2181200 2820000 3437300 2620900 3179500 1 1 1 1 1 1 1 1 1 1 1 159990000 88853000 71132000 633 271;272 603 3517;3518;3519 4239;4240;4241 4239 3 AFSQFGKLER Unmodified 1181.6193 0.61930707 271;272 O60506;O60506-2;O60506-3;O60506-4;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 1 By MS/MS By matching 1 0 2 1 1 46.265 46.149 3 0.00018196 12458 20211116_3428_TMUAki_TMT10x_P_F1 112.64 85.235 1212400 1860300 15384 2017000 4048900 4217100 2077600 3625500 3469300 2147700 2474500 1128900 1736400 154580 2079500 3833700 4147100 2253500 3671800 3433200 2158500 2417800 1 1 1 1 1 1 1 1 1 1 1 1212400 1860300 15384 2017000 4048900 4217100 2077600 3625500 3469300 2147700 2474500 1128900 1736400 154580 2079500 3833700 4147100 2253500 3671800 3433200 2158500 2417800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 236760000 138200000 98561000 634 271;272 604 3520;3521 4242 4242 1 AFSQFVRPLIAAK Unmodified 1446.8347 0.83471958 1735 Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 65.462 65.707 3 6.7994E-12 20387 20211116_3445_TMUAki_TMT10x_S_F6 153.32 128.39 37962000 64892000 689160 67633000 48880000 57597000 40027000 46294000 40718000 42537000 49157000 35351000 60562000 3942500 68653000 46688000 59041000 41085000 47526000 41693000 41698000 47159000 5 5 5 5 5 5 5 5 5 5 5 18582000 30948000 260550 31124000 27801000 42489000 24230000 21688000 19098000 19821000 22977000 17303000 28878000 1912500 31909000 26583000 42116000 24606000 23045000 19792000 19435000 22045000 3 3 3 3 3 3 3 3 3 3 3 19380000 33944000 428600 36509000 21080000 15108000 15796000 24606000 21620000 22716000 26180000 18048000 31683000 2030000 36744000 20105000 16925000 16479000 24481000 21901000 22263000 25114000 2 2 2 2 2 2 2 2 2 2 2 3576700000 2038100000 1538600000 635 1735 605 3522;3523;3524;3525 4243;4244;4245;4246;4247 4246 5 AFSSNPVVR Unmodified 975.51378 0.51377937 1903 Q53F19;Q53F19-2 C17orf85 Uncharacterized protein C17orf85 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 35.105 35.53 2 0.0001067 7583 20211116_3447_TMUAki_TMT10x_S_F8 139.74 101.32 358100 566240 8957.6 633930 640220 638180 453100 411610 402930 374210 542750 333480 528610 40845 642000 609640 644780 467830 428810 417070 367010 519240 3 3 2 3 3 3 3 3 3 3 3 267220 412340 8957.6 456430 533600 558320 344580 312740 288550 270950 395170 248880 384930 34234 464050 507430 556970 357670 329110 299790 266340 377910 2 2 2 2 2 2 2 2 2 2 2 90876 153890 0 177500 106620 79861 108520 98872 114380 103260 147580 84605 143690 6611.2 177950 102210 87807 110160 99699 117280 100670 141330 1 1 0 1 1 1 1 1 1 1 1 23517000 14885000 8631800 636 1903 606 3526;3527;3528 4248;4249;4250 4250 3 AFSSPQEEEEAGFTGRR Unmodified 1896.8602 0.86021864 1698 Q14241 TCEB3 Transcription elongation factor B polypeptide 3 yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 38.909 38.638 3 1.2063E-39 11013 20211116_3429_TMUAki_TMT10x_P_F2 192.55 151.74 498080 816420 0 1130600 343860 331590 336240 892810 955820 723150 812300 463750 762980 37553 1119200 329410 399700 360640 874350 940180 713250 788040 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 498080 816420 0 1130600 343860 331590 336240 892810 955820 723150 812300 463750 762980 37553 1119200 329410 399700 360640 874350 940180 713250 788040 1 1 0 1 1 1 1 1 1 1 1 90258000 0 90258000 637 1698 607 3529;3530 4251;4252 4251 2 AFSVFLFNTENK Unmodified 1415.7085 0.70851601 1670 Q13907;Q13907-2 IDI1 Isopentenyl-diphosphate Delta-isomerase 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.43 0.495 4 3 3 4 78.317 78.262 2;3 4.8697E-09 25771 20211116_3440_TMUAki_TMT10x_S_F2 154.24 132.94 36792000 59284000 310000 53988000 40027000 46245000 44131000 40899000 38766000 42978000 42642000 34257000 55298000 3144300 55335000 38487000 47468000 44384000 41916000 39810000 41889000 41015000 7 7 4 7 7 7 7 7 7 7 7 14085000 22127000 214090 20475000 13290000 22908000 16172000 14863000 14656000 16654000 16597000 13116000 20641000 1356200 21041000 12828000 23007000 16206000 15571000 15045000 16192000 15951000 3 3 3 3 3 3 3 3 3 3 3 22706000 37157000 95912 33514000 26738000 23336000 27959000 26037000 24110000 26324000 26045000 21141000 34658000 1788100 34295000 25658000 24462000 28177000 26345000 24765000 25697000 25065000 4 4 1 4 4 4 4 4 4 4 4 7468300000 3473600000 3994800000 638 1670 608 3531;3532;3533;3534;3535;3536;3537 4253;4254;4255;4256;4257;4258;4259 4258 7 AFTCDDLFR Unmodified 1143.5019 0.50189405 1315 P61599;P61599-2 NAA20 N-alpha-acetyltransferase 20 yes no 0 0 0 0 By MS/MS 4 0 1 1 59.195 59.101 2 0.0072995 18586 20211116_3442_TMUAki_TMT10x_S_F4 68.016 61.652 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 639 1315 609 3538 4260 4260 1 AFTELFQVACAKPPPLGLCDYPSSR Unmodified 2823.3724 0.37240679 1688 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 3 3 2 4 78.622 78.575 3;4 7.3836E-12 28645 20211116_3441_TMUAki_TMT10x_S_F3 116.7 102.83 22826000 39803000 13424 36644000 30406000 29130000 29852000 23445000 23130000 24854000 30074000 21250000 37128000 1385300 37494000 29118000 30012000 30101000 24166000 24072000 24215000 28797000 7 7 1 7 7 7 7 7 7 7 7 4711000 8354300 13424 7309000 5179300 10704000 6116500 6398100 5947200 6391800 6774400 4386500 7791500 140480 7580900 4990600 10598000 6150000 6722200 6087000 6242800 6509400 2 2 1 2 2 2 2 2 2 2 2 18115000 31448000 0 29335000 25226000 18426000 23736000 17046000 17183000 18462000 23300000 16864000 29337000 1244800 29913000 24128000 19413000 23951000 17444000 17985000 17972000 22287000 5 5 0 5 5 5 5 5 5 5 5 3919400000 1322600000 2596800000 640 1688 610 3539;3540;3541;3542;3543;3544 4261;4262;4263;4264;4265;4266;4267 4264 7 AFTGFIVEADTPGIQIGRK Unmodified 2019.0789 0.078925608 623 P11310;P11310-2 ACADM Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 70.628 70.554 3 5.7899E-41 24427 20211116_3439_TMUAki_TMT10x_S_F1 209.7 188.64 18433000 30078000 135710 25313000 19248000 26374000 18150000 20573000 20523000 20062000 22513000 17161000 28048000 1367300 26176000 18417000 26673000 18542000 21194000 20845000 19615000 21656000 3 3 2 3 3 3 3 3 3 3 3 13221000 20598000 49675 17316000 10603000 19476000 11638000 14022000 14352000 13896000 15095000 12308000 19208000 806970 17929000 10176000 19586000 11835000 14528000 14509000 13577000 14539000 2 2 1 2 2 2 2 2 2 2 2 5211300 9479600 86032 7996900 8645200 6897800 6512600 6550500 6170600 6166200 7417200 4852800 8839900 560320 8246400 8241000 7087000 6706900 6666100 6336700 6038100 7116500 1 1 1 1 1 1 1 1 1 1 1 2933900000 1819200000 1114700000 641 623 611 3545;3546 4268;4269;4270 4270 3 AFTGREFDELNPSAQR Unmodified 1836.8755 0.87547477 697 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 0 1 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 49.021 49.187 3 6.2269E-47 13474 20211116_3445_TMUAki_TMT10x_S_F6 246.95 225.5 23355000 39544000 61447 44508000 37939000 39665000 24613000 33765000 33583000 28020000 33405000 21745000 36917000 1994500 44982000 36033000 40574000 25940000 34455000 33766000 27603000 32230000 8 8 3 8 8 8 8 8 8 8 8 12484000 20756000 61447 23626000 26597000 31530000 17743000 18096000 18367000 15051000 17928000 11624000 19378000 1231100 24018000 25280000 31331000 18480000 18986000 18642000 14825000 17308000 4 4 3 4 4 4 4 4 4 4 4 10871000 18788000 0 20882000 11341000 8135200 6870100 15668000 15216000 12970000 15477000 10120000 17539000 763430 20965000 10753000 9243200 7460700 15470000 15123000 12778000 14922000 4 4 0 4 4 4 4 4 4 4 4 3132600000 1437100000 1695400000 642 697 612 3547;3548;3549;3550;3551;3552 4271;4272;4273;4274;4275;4276;4277;4278;4279 4279 9 AFTHTAQYDEAISDYFR Unmodified 2033.9119 0.91191986 892 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 By MS/MS By MS/MS 5 1.22 1 2 2 2 1 3 5 62.384 62.483 3 2.6522E-37 19739 20211116_3433_TMUAki_TMT10x_P_F5 218.12 202.97 48657000 88923000 743470 83248000 59614000 79687000 60212000 61314000 57033000 61416000 66080000 45308000 82953000 4037800 85274000 57204000 80987000 60946000 63270000 58481000 59977000 63465000 17 17 9 17 17 17 17 17 17 17 17 21800000 37706000 496590 35919000 26571000 48772000 30261000 26967000 26054000 27327000 29354000 20302000 35177000 2085100 36961000 25597000 48403000 30372000 28530000 26807000 26675000 28214000 8 8 5 8 8 8 8 8 8 8 8 26857000 51217000 246880 47329000 33043000 30916000 29951000 34347000 30979000 34088000 36726000 25006000 47777000 1952700 48313000 31607000 32584000 30574000 34741000 31675000 33303000 35250000 9 9 4 9 9 9 9 9 9 9 9 9793700000 5258200000 4535400000 643 892 613 3553;3554;3555;3556;3557;3558;3559;3560 4280;4281;4282;4283;4284;4285;4286;4287;4288;4289;4290;4291;4292;4293;4294;4295;4296;4297 4284 18 AFTHTAQYDEAISDYFRK Unmodified 2162.0069 0.006882877 892 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 1 By MS/MS By MS/MS 7.29 0.7 1 3 3 3 4 59.065 59.347 3;4 8.3014E-64 17359 20211116_3447_TMUAki_TMT10x_S_F8 271.68 239.53 45855000 76229000 123400 80340000 58754000 72942000 55238000 58444000 56178000 54067000 61206000 42692000 71145000 3606500 81559000 56224000 74439000 56243000 60023000 57289000 52985000 58888000 6 6 2 6 6 6 6 6 6 6 6 19871000 35044000 101340 36480000 25023000 45721000 27473000 24631000 25006000 25086000 26527000 18501000 32705000 1650000 37252000 24050000 45533000 27663000 26121000 25601000 24481000 25542000 2 2 1 2 2 2 2 2 2 2 2 25984000 41185000 22062 43860000 33731000 27221000 27765000 33813000 31172000 28981000 34679000 24191000 38440000 1956500 44307000 32173000 28905000 28580000 33901000 31688000 28503000 33345000 4 4 1 4 4 4 4 4 4 4 4 13928000000 7514700000 6413500000 644 892 614 3561;3562;3563;3564;3565;3566;3567 4298;4299;4300;4301;4302 4302 5 AFTKPEEACSFILSADFPALVVK Unmodified 2539.3032 0.30324782 766 P22102;P22102-2 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 0 0 0 1 By MS/MS By MS/MS 2.75 3.03 3 1 3 1 79.28 79.267 3;4 4.6576E-15 26011 20211116_3428_TMUAki_TMT10x_P_F1 122 106.03 10352000 15297000 174740 14714000 9769300 15564000 11271000 9282200 8684000 9549400 11464000 9640300 14271000 1013000 15065000 9415600 15662000 11274000 9762500 9046400 9315400 10973000 3 3 3 3 3 3 3 3 3 3 3 7498200 10949000 109320 10253000 6360800 12768000 7728800 6694800 6425700 6964700 8116700 6982400 10214000 707610 10547000 6140000 12716000 7727800 7121400 6654100 6791000 7777500 2 2 2 2 2 2 2 2 2 2 2 2854000 4347400 65426 4461000 3408500 2796000 3542600 2587400 2258300 2584600 3347400 2657800 4057000 305360 4518100 3275600 2946400 3546700 2641100 2392300 2524400 3195400 1 1 1 1 1 1 1 1 1 1 1 4322600000 3488900000 833750000 645 766 615 3568;3569;3570;3571 4303;4304;4305;4306 4303 4 AFTMDCITLEGDQVSHR Oxidation (M) 1994.8826 0.88261034 3219 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 1 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 47.491 47.475 3 1.065E-21 16071 20211116_3441_TMUAki_TMT10x_S_F3 168.05 151.52 5247900 8685100 31165 10178000 8631400 10119000 6434800 6918200 7732100 6645600 7322300 4886100 8109700 452640 10277000 8219000 10240000 6682100 7187300 7794800 6501600 7076200 5 5 2 5 5 5 5 5 5 5 5 3746800 6110700 31165 7227100 7413900 8813900 5359400 4164500 4783300 4137300 4794000 3488400 5706100 342170 7317700 7055900 8776600 5525900 4468000 4891800 4041800 4624300 3 3 2 3 3 3 3 3 3 3 3 1501200 2574400 0 2950600 1217500 1304700 1075400 2753600 2948800 2508300 2528200 1397600 2403600 110470 2958900 1163200 1463300 1156200 2719200 2903000 2459800 2451900 2 2 0 2 2 2 2 2 2 2 2 1199000000 759980000 439070000 646 3219 616 3572;3573;3574;3575 4307;4308;4309;4310;4311 4310 3206 5 AFTMDCITLEGDQVSHR Unmodified 1978.8877 0.88769572 3219 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 57.386 57.342 3 0.0036651 17409 20211116_3431_TMUAki_TMT10x_P_F4 58.539 46.374 15698000 24925000 141110 26249000 26366000 37134000 19762000 23065000 23487000 21151000 22924000 14617000 23263000 1582400 26848000 25124000 36842000 20506000 24104000 23711000 20736000 22131000 3 3 3 3 3 3 3 3 3 3 3 15698000 24925000 141110 26249000 26366000 37134000 19762000 23065000 23487000 21151000 22924000 14617000 23263000 1582400 26848000 25124000 36842000 20506000 24104000 23711000 20736000 22131000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 608140000 608140000 0 647 3219 616 3576;3577 4312;4313;4314 4313 3 AFTPFSGPK Unmodified 950.48617 0.48616764 646 P12955;P12955-2;P12955-3 PEPD Xaa-Pro dipeptidase yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 53.924 53.729 2 0.00063041 17141 20211116_3429_TMUAki_TMT10x_P_F2 86.67 45.018 4476500 7269100 19067 7771300 4638500 3851500 3823700 6399900 5803300 5873300 6196900 4168200 6784700 391170 7833900 4428300 4222700 3982500 6362600 5831200 5757800 5965800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4476500 7269100 19067 7771300 4638500 3851500 3823700 6399900 5803300 5873300 6196900 4168200 6784700 391170 7833900 4428300 4222700 3982500 6362600 5831200 5757800 5965800 1 1 1 1 1 1 1 1 1 1 1 327640000 0 327640000 648 646 617 3578;3579;3580 4315;4316;4317 4315 3 AFTTTLNLLPYHK Unmodified 1517.8242 0.82421447 251 O43847;O43847-2 NRD1 Nardilysin yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 66.884 66.783 3 7.2703E-05 21231 20211116_3431_TMUAki_TMT10x_P_F4 94.191 79.219 3338000 5930200 189120 6092800 3917000 7241300 4659800 3709900 3556000 3869700 4117900 3109400 5534100 461100 6221300 3785900 7226700 4653600 3955000 3685900 3772800 3955000 1 1 1 1 1 1 1 1 1 1 1 3338000 5930200 189120 6092800 3917000 7241300 4659800 3709900 3556000 3869700 4117900 3109400 5534100 461100 6221300 3785900 7226700 4653600 3955000 3685900 3772800 3955000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 784250000 784250000 0 649 251 618 3581;3582;3583 4318;4319 4318 2 AFTYINLDK Unmodified 1083.5601 0.56006086 480 P02786 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes yes 0 0 0 0 By MS/MS 7 0 1 1 63.077 63.533 2 3.0376E-05 21350 20211116_3446_TMUAki_TMT10x_S_F7 131.5 91.072 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 650 480 619 3584 4320 4320 1 AFVAGVLPFK Unmodified 1047.6117 0.6117025 88 O00442;O00442-2 RTCA RNA 3'-terminal phosphate cyclase yes no 0 0 0 0 By MS/MS By MS/MS 4.25 0.433 3 1 3 1 75.131 75.121 2;3 7.5981E-07 24662 20211116_3431_TMUAki_TMT10x_P_F4 157.52 126.86 12156000 19621000 166620 19857000 15559000 19600000 16005000 13764000 11727000 14274000 15650000 11320000 18309000 1206200 20237000 14939000 19852000 16079000 14304000 12256000 13920000 14975000 3 3 2 3 3 3 3 3 3 3 3 7881500 12297000 166620 12702000 9951200 15351000 11015000 9202500 7794000 9569000 10107000 7339700 11476000 837700 12969000 9578500 15337000 11018000 9677700 8152100 9330500 9677900 2 2 2 2 2 2 2 2 2 2 2 4274600 7324500 0 7155200 5607500 4249600 4989700 4561500 3932800 4705200 5543200 3980000 6833900 368540 7268000 5360900 4515400 5060800 4626400 4104300 4589400 5297500 1 1 0 1 1 1 1 1 1 1 1 1041400000 796050000 245360000 651 88 620 3585;3586;3587;3588 4321;4322;4323;4324 4321 4 AFVAIGDYNGHVGLGVK Unmodified 1715.8995 0.89950468 687 P15880 RPS2 40S ribosomal protein S2 yes yes 0 0 0 0 By MS/MS By MS/MS 3.75 2.83 5 2 1 2 2 7 5 61.581 61.65 2;3;4 5.2533E-51 18776 20211116_3428_TMUAki_TMT10x_P_F1 236.61 202.65 139500000 237140000 2167100 236270000 165030000 235730000 161700000 155570000 141720000 156230000 168250000 129900000 221270000 13491000 241090000 158260000 238380000 163570000 162240000 145990000 152550000 161480000 17 17 15 17 17 17 17 17 17 17 17 87143000 150730000 943200 147190000 111760000 186130000 110170000 100170000 90968000 100200000 104110000 81143000 140630000 7996200 150990000 107150000 185280000 111240000 106190000 93851000 97864000 100020000 10 10 8 10 10 10 10 10 10 10 10 52358000 86414000 1223900 89079000 53269000 49603000 51525000 55394000 50755000 56025000 64140000 48759000 80643000 5494300 90097000 51108000 53098000 52332000 56047000 52143000 54691000 61459000 7 7 7 7 7 7 7 7 7 7 7 21158000000 12062000000 9096100000 652 687 621 3589;3590;3591;3592;3593;3594;3595;3596;3597;3598;3599;3600 4325;4326;4327;4328;4329;4330;4331;4332;4333;4334;4335;4336;4337;4338;4339;4340;4341;4342;4343 4330 19 AFVDFLSDEIK Unmodified 1282.6445 0.64451877 1535 Q07021 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4 1.41 2 2 2 2 2 4 6 79.225 79.206 2 2.2103E-23 26764 20211116_3442_TMUAki_TMT10x_S_F4 247.51 145.87 39374000 58412000 48701 72296000 34223000 29743000 38948000 14643000 18165000 19711000 37620000 36659000 54557000 2906700 72137000 32915000 32586000 38616000 15802000 20079000 19042000 35688000 6 6 1 6 6 6 6 6 6 6 6 11619000 17429000 0 20951000 9379700 11582000 9982300 4362100 5688900 6090900 10923000 10817000 16276000 795250 20985000 9000000 12215000 9961100 4851200 6161100 5877500 10375000 2 2 0 2 2 2 2 2 2 2 2 27756000 40983000 48701 51345000 24844000 18161000 28965000 10281000 12476000 13620000 26697000 25842000 38280000 2111400 51152000 23915000 20371000 28655000 10951000 13918000 13165000 25313000 4 4 1 4 4 4 4 4 4 4 4 5717700000 2822600000 2895200000 653 1535 622 3601;3602;3603;3604;3605;3606;3607;3608;3609;3610 4344;4345;4346;4347;4348;4349;4350 4348 7 AFVDFLSDEIKEER Unmodified 1696.8308 0.83081599 1535 Q07021 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 2.58 1.66 7 4 3 2 1 2 9 10 74.204 74.158 2;3 2.7041E-37 25262 20211116_3440_TMUAki_TMT10x_S_F2 242.07 207.89 359340000 614680000 4068100 494450000 439840000 658750000 488530000 518650000 421830000 486430000 511390000 334610000 573110000 33928000 515370000 423160000 657810000 490930000 533440000 435240000 476400000 490540000 22 22 14 22 22 22 22 22 22 22 22 173640000 289410000 1527300 227610000 170890000 375240000 231980000 246940000 214710000 233880000 240840000 161690000 269820000 15601000 238770000 165480000 370280000 231580000 257150000 220110000 228960000 231520000 8 8 4 8 8 8 8 8 8 8 8 185700000 325270000 2540800 266840000 268950000 283510000 256550000 271720000 207130000 252540000 270540000 172920000 303290000 18327000 276590000 257680000 287530000 259350000 276280000 215130000 247440000 259020000 14 14 10 14 14 14 14 14 14 14 14 62062000000 31186000000 30876000000 654 1535 623 3611;3612;3613;3614;3615;3616;3617;3618;3619;3620;3621;3622;3623;3624;3625;3626;3627;3628;3629 4351;4352;4353;4354;4355;4356;4357;4358;4359;4360;4361;4362;4363;4364;4365;4366;4367;4368;4369;4370;4371;4372;4373;4374;4375 4364 25 AFVDFLSDEIKEERK Unmodified 1824.9258 0.92577901 1535 Q07021 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes yes 0 0 0 2 By MS/MS By MS/MS 5.09 1.98 1 2 2 3 4 3 5 2 11 11 71.161 71.142 3;4 2.691E-51 23035 20211116_3431_TMUAki_TMT10x_P_F4 283.45 258.13 469750000 735500000 5561600 761610000 472250000 503160000 455120000 219770000 322610000 327200000 470840000 437400000 686400000 41317000 771260000 452540000 522160000 458440000 240970000 339260000 315140000 449610000 33 33 23 33 33 33 33 33 33 33 33 243740000 361910000 2145100 388290000 221000000 319000000 233820000 111870000 169190000 168890000 232130000 226950000 337790000 20496000 393220000 212270000 324590000 234510000 125900000 177180000 162600000 221980000 17 17 11 17 17 17 17 17 17 17 17 226010000 373600000 3416500 373310000 251250000 184160000 221300000 107900000 153420000 158310000 238700000 210450000 348600000 20821000 378030000 240270000 197570000 223940000 115070000 162080000 152530000 227630000 16 16 12 16 16 16 16 16 16 16 16 52505000000 28177000000 24328000000 655 1535 624 3630;3631;3632;3633;3634;3635;3636;3637;3638;3639;3640;3641;3642;3643;3644;3645;3646;3647;3648;3649;3650;3651 4376;4377;4378;4379;4380;4381;4382;4383;4384;4385;4386;4387;4388;4389;4390;4391;4392;4393;4394;4395;4396;4397;4398;4399;4400;4401;4402;4403;4404;4405;4406;4407;4408;4409;4410 4381 35 AFVGFEYEDSR Unmodified 1318.583 0.58298115 2235 Q8ND04;Q8ND04-2 SMG8 Protein SMG8 yes no 0 0 0 0 By MS/MS 3 0 1 1 57.457 57.225 2 0.0046548 19016 20211116_3430_TMUAki_TMT10x_P_F3 70.908 55.279 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 656 2235 625 3652 4411 4411 1 AFVHWYVGEGMEEGEFSEAR Oxidation (M) 2345.0059 0.005896599 1417;2044 P68363;P68363-2;P68366;P68366-2;Q71U36;Q71U36-2;Q9BQE3;P0DPH8;P0DPH7;Q9NY65;Q9NY65-2 TUBA1B;TUBA4A;TUBA1A;TUBA1C;TUBA8 Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-8 chain no no 0 0 1 0 By MS/MS By MS/MS 3 1.41 2 2 2 2 2 5 5 60.678 60.558 3 9.0818E-13 21417 20211116_3441_TMUAki_TMT10x_S_F3 122.01 118.72 29925000 50829000 259730 43871000 34326000 57186000 38685000 39516000 34893000 41843000 40424000 27864000 47402000 1949600 45446000 33031000 57039000 38895000 41139000 35860000 40770000 38824000 18 18 9 18 18 18 18 18 18 18 18 15508000 27129000 174550 23780000 21689000 40792000 21844000 22120000 19335000 22382000 22116000 14441000 25302000 1049900 24751000 20808000 40087000 22072000 23440000 19879000 21849000 21248000 10 10 5 10 10 10 10 10 10 10 10 14417000 23699000 85187 20091000 12637000 16394000 16841000 17397000 15558000 19461000 18308000 13423000 22100000 899650 20695000 12224000 16952000 16823000 17699000 15981000 18921000 17576000 8 8 4 8 8 8 8 8 8 8 8 14122000000 7908200000 6213400000 657 1417;2044 626 3653;3654;3655;3656;3657;3658;3659;3660;3661;3662 4412;4413;4414;4415;4416;4417;4418;4419;4420;4421;4422;4423;4424;4425;4426;4427;4428;4429 4425 1906 18 AFVHWYVGEGMEEGEFSEAR Unmodified 2329.011 0.010981977 1417;2044 P68363;P68363-2;P68366;P68366-2;Q71U36;Q71U36-2;Q9BQE3;P0DPH8;P0DPH7;Q9NY65;Q9NY65-2 TUBA1B;TUBA4A;TUBA1A;TUBA1C;TUBA8 Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-8 chain no no 0 0 0 0 By MS/MS By MS/MS 2.75 0.433 1 3 2 2 67.388 67.088 3 9.5059E-25 23112 20211116_3430_TMUAki_TMT10x_P_F3 171.98 160.02 10944000 17545000 54152 15182000 11218000 20575000 13494000 9061700 8889100 9572300 11944000 10189000 16362000 881930 15735000 10812000 20369000 13426000 9809600 9353100 9327700 11427000 4 4 2 4 4 4 4 4 4 4 4 10944000 17545000 54152 15182000 11218000 20575000 13494000 9061700 8889100 9572300 11944000 10189000 16362000 881930 15735000 10812000 20369000 13426000 9809600 9353100 9327700 11427000 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1361300000 1361300000 0 658 1417;2044 626 3663;3664;3665;3666 4430;4431;4432;4433;4434;4435 4432 6 AFVHWYVGEGMEEGEFSEAREDMAALEK 2 Oxidation (M) 3248.4067 0.40667963 1417;2044 P68363;P68363-2;P68366;P68366-2;Q71U36;Q71U36-2;Q9BQE3 TUBA1B;TUBA4A;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain no no 0 0 2 1 By MS/MS By MS/MS 2.6 1.2 2 3 3 1 1 3 7 64.416 64.185 4 3.0764E-07 20164 20211116_3440_TMUAki_TMT10x_S_F2 81.974 75.143 50672000 86305000 174130 63764000 49877000 93669000 70621000 49648000 61366000 73636000 61983000 47178000 80447000 3436000 67089000 48326000 92590000 70262000 53418000 62857000 70928000 59774000 12 12 5 12 12 12 12 12 12 12 12 30773000 50270000 23510 38215000 28936000 67283000 40055000 28805000 36752000 44221000 35729000 28650000 46862000 1749500 40272000 28003000 65886000 39946000 31690000 37497000 42553000 34498000 5 5 2 5 5 5 5 5 5 5 5 19899000 36034000 150620 25549000 20941000 26386000 30565000 20843000 24614000 29415000 26254000 18528000 33585000 1686500 26818000 20322000 26704000 30316000 21728000 25359000 28375000 25275000 7 7 3 7 7 7 7 7 7 7 7 19908000000 8664700000 11244000000 659 1417;2044 627 3667;3668;3669;3670;3671;3672;3673;3674;3675;3676 4436;4437;4438;4439;4440;4441;4442;4443;4444;4445;4446 4443 1906;1907 11 AFVHWYVGEGMEEGEFSEAREDMAALEK Oxidation (M) 3232.4118 0.411765 1417;2044 P68363;P68363-2;P68366;P68366-2;Q71U36;Q71U36-2;Q9BQE3 TUBA1B;TUBA4A;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain no no 0 0 1 1 By MS/MS By MS/MS 2.17 1.07 2 2 1 1 3 3 73.726 73.616 4 3.9701E-33 23663 20211116_3428_TMUAki_TMT10x_P_F1 165.62 162.49 58703000 98293000 92063 76213000 55250000 65490000 76022000 21359000 21610000 33036000 52775000 54655000 91635000 3471700 79149000 53470000 66387000 74342000 24293000 25472000 31784000 49945000 11 11 2 11 11 11 11 11 11 11 11 36473000 60073000 52877 45417000 34816000 46140000 42977000 12067000 12108000 19894000 30112000 33958000 56000000 1828500 47379000 33571000 46194000 42211000 14222000 14307000 19107000 28491000 6 6 1 6 6 6 6 6 6 6 6 22230000 38220000 39186 30796000 20434000 19350000 33045000 9292700 9502800 13143000 22663000 20697000 35636000 1643200 31771000 19899000 20192000 32130000 10071000 11165000 12677000 21454000 5 5 1 5 5 5 5 5 5 5 5 9563300000 4862700000 4700600000 660 1417;2044 627 3677;3678;3679;3680;3681;3682 4447;4448;4449;4450;4451;4452;4453;4454;4455;4456;4457 4449 1906;1907 11 AFVPPLAEDLLAR Unmodified 1410.7871 0.78710068 2531 Q96P48;Q96P48-1;Q96P48-5;Q96P48-7;Q96P48-2;Q96P48-4;Q96P48-3 ARAP1 Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 yes no 0 0 0 0 By MS/MS 6 0 1 1 79.023 79.015 2 0.0015014 25699 20211116_3445_TMUAki_TMT10x_S_F6 73.781 43.095 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 661 2531 628 3683 4458 4458 1 AFVPQLR Unmodified 829.48102 0.48102268 1154 P51532-5;P51532-2;P51532-3;P51532-4;P51532 SMARCA4 Transcription activator BRG1 yes no 0 0 0 0 By MS/MS 1.5 0.5 1 1 2 47.67 47.51 2 0.053822 13298 20211116_3440_TMUAki_TMT10x_S_F2 67.035 32.143 2648300 4085500 0 4673100 2425600 2086500 2428700 2410900 2265900 2462200 3162500 2465700 3814400 197260 4687100 2324600 2292400 2458400 2436400 2344100 2402600 3023000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2648300 4085500 0 4673100 2425600 2086500 2428700 2410900 2265900 2462200 3162500 2465700 3814400 197260 4687100 2324600 2292400 2458400 2436400 2344100 2402600 3023000 1 1 0 1 1 1 1 1 1 1 1 129040000 0 129040000 662 1154 629 3684;3685 4459 4459 1 AFVRPSGTEDVVR Unmodified 1431.747 0.74702678 427 O95394;O95394-3;O95394-4 PGM3 Phosphoacetylglucosamine mutase yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.499 35.553 3 8.0027E-15 7663 20211116_3444_TMUAki_TMT10x_S_F5 171.36 132.72 4399300 6624500 19536 7625500 9370400 7811600 5474700 5559500 6321100 4834800 6791000 4096200 6185100 429640 7711300 8886500 7895800 5783100 5744500 6410300 4751700 6536500 4 4 2 4 4 4 4 4 4 4 4 3082800 4459700 0 5022100 8031500 6672000 4037100 3565900 4143700 3153900 4438800 2870200 4163500 301970 5108300 7599100 6625400 4307200 3770000 4221300 3097200 4272900 2 2 0 2 2 2 2 2 2 2 2 1316500 2164800 19536 2603400 1338900 1139600 1437600 1993500 2177400 1680900 2352100 1226000 2021600 127670 2603000 1287500 1270400 1475900 1974400 2189000 1654500 2263600 2 2 2 2 2 2 2 2 2 2 2 597570000 480270000 117300000 663 427 630 3686;3687;3688 4460;4461;4462;4463 4463 4 AFVSMVYSEEGAEDR Oxidation (M) 1704.7301 0.73011567 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 1 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 50.736 50.477 2 8.3538E-32 15793 20211116_3429_TMUAki_TMT10x_P_F2 186.82 174.32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 664 1723 631 3689;3690;3691 4464;4465;4466 4464 2311 3 AFVSMVYSEEGAEDRTFAR Oxidation (M) 2179.9844 0.98443288 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 1 1 By MS/MS 4 0 1 1 52.555 52.634 3 2.9591E-12 15858 20211116_3442_TMUAki_TMT10x_S_F4 130.64 121.36 2463200 3735900 52346 5937900 1924200 1830900 1619200 2842200 3115900 2999300 3344000 2293900 3494200 245450 5840700 1840500 2141200 1704700 2843400 3112500 2922800 3218800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2463200 3735900 52346 5937900 1924200 1830900 1619200 2842200 3115900 2999300 3344000 2293900 3494200 245450 5840700 1840500 2141200 1704700 2843400 3112500 2922800 3218800 1 1 1 1 1 1 1 1 1 1 1 442250000 0 442250000 665 1723 632 3692 4467 4467 2311 1 AFYGDTLVTGFAR Unmodified 1416.7038 0.70376498 2864 Q9HCC0;Q9HCC0-2 MCCC2 Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 8 0 3 1 2 68.172 68.172 2;3 1.6995E-29 20995 20211116_3447_TMUAki_TMT10x_S_F8 241.63 221.64 6654200 11333000 58707 10770000 6416200 8532800 7477700 6417300 6006900 6892600 7163100 6195600 10572000 539530 10994000 6178200 8783200 7483900 6645700 6216400 6712000 6874200 2 2 1 2 2 2 2 2 2 2 2 3358100 5713100 58707 5509300 3025900 5245600 3747700 3218700 3200000 3411200 3691900 3127100 5330200 328470 5630800 2923000 5314600 3746800 3380600 3296900 3323600 3546300 1 1 1 1 1 1 1 1 1 1 1 3296100 5619600 0 5261000 3390300 3287200 3729900 3198600 2806900 3481400 3471100 3068500 5242300 211060 5362900 3255200 3468500 3737100 3265100 2919500 3388400 3327900 1 1 0 1 1 1 1 1 1 1 1 898950000 501950000 397000000 666 2864 633 3693;3694;3695 4468;4469;4470 4469 3 AFYPEEISSMVLTK Oxidation (M) 1629.796 0.79601039 596 P0DMV8;P0DMV9 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B no no 0 0 1 0 By MS/MS By MS/MS 5.67 0.943 1 1 3 1 5 1 71.48 71.408 3 8.8353E-07 22579 20211116_3434_TMUAki_TMT10x_P_F6 97.551 83.889 11900000 18729000 0 19162000 13759000 13334000 15002000 11910000 10916000 12901000 15083000 11080000 17478000 932570 19431000 13219000 13911000 15026000 12210000 11432000 12559000 14421000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11900000 18729000 0 19162000 13759000 13334000 15002000 11910000 10916000 12901000 15083000 11080000 17478000 932570 19431000 13219000 13911000 15026000 12210000 11432000 12559000 14421000 2 2 0 2 2 2 2 2 2 2 2 997730000 425240000 572490000 667 596 634 3696;3697;3698;3699;3700;3701 4471;4472;4473;4474;4475;4476 4473 570 6 AFYPEEISSMVLTK Unmodified 1613.8011 0.80109577 596 P0DMV8;P0DMV9 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B no no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 78.429 78.456 2;3 1.9017E-13 27628 20211116_3446_TMUAki_TMT10x_S_F7 127.52 108.42 8443100 12773000 0 13490000 8012300 11962000 10246000 6872400 6982800 8448500 10559000 7860300 11921000 567900 13688000 7730500 12166000 10175000 7291400 7373500 8186300 10075000 2 2 0 2 2 2 2 2 2 2 2 4082400 6314400 0 6064900 3359400 6578900 4580300 3063700 3264300 4187300 5107000 3800600 5891100 267190 6212500 3247900 6591500 4541400 3326000 3443800 4043300 4869500 1 1 0 1 1 1 1 1 1 1 1 4360700 6458600 0 7424900 4652900 5382700 5665500 3808700 3718500 4261200 5452300 4059700 6030200 300710 7475800 4482700 5574100 5633600 3965400 3929600 4143100 5206000 1 1 0 1 1 1 1 1 1 1 1 1112600000 394790000 717760000 668 596 634 3702;3703;3704 4477;4478;4479 4479 3 AGAAERELPLYR Unmodified 1344.715 0.71499837 568 P09104;P09104-2 ENO2 Gamma-enolase yes no 0 0 0 1 By MS/MS 4 0 1 1 38.081 38.122 3 5.2334E-15 9622 20211116_3431_TMUAki_TMT10x_P_F4 151.55 118.49 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 669 568 635 3705 4480 4480 1 AGAAPYVQAFDSLLAGPVAEYLK Unmodified 2350.2209 0.2208984 1482 Q01518 CAP1 Adenylyl cyclase-associated protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.9 2.66 1 3 2 2 2 7 3 82.75 82.748 3;4 5.1018E-21 27567 20211116_3440_TMUAki_TMT10x_S_F2 151.82 115.33 10598000 17324000 45137 16765000 12216000 15438000 13357000 10123000 10200000 11415000 13375000 9867800 16163000 854790 17123000 11739000 15690000 13391000 10599000 10628000 11095000 12804000 11 11 5 11 11 11 11 11 11 11 11 5001900 8036000 13480 7745300 4536400 8644100 5911100 4877000 4882200 5439700 6137100 4656900 7497300 359050 7935400 4381000 8666000 5892100 5165500 5056400 5289500 5881400 4 4 1 4 4 4 4 4 4 4 4 5596500 9288300 31657 9019700 7679200 6794300 7446000 5245700 5318100 5975100 7238000 5210900 8666000 495740 9187300 7357500 7024000 7499100 5433500 5571500 5805500 6922800 7 7 4 7 7 7 7 7 7 7 7 2022200000 831410000 1190800000 670 1482 636 3706;3707;3708;3709;3710;3711;3712;3713;3714;3715 4481;4482;4483;4484;4485;4486;4487;4488;4489;4490;4491;4492;4493 4488 13 AGAATQASLESAPR Acetyl (Protein N-term) 1370.679 0.6790068 2716 Q9BXR0;Q9BXR0-2 QTRT1 Queuine tRNA-ribosyltransferase yes no 1 0 0 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 3 2 39.528 39.57 2 2.3238E-33 9849 20211116_3440_TMUAki_TMT10x_S_F2 158.05 139.27 186110 326230 1962.4 370370 167220 160630 145980 369870 380800 281900 326810 173300 304570 16994 371580 159930 181280 156450 362870 375200 278940 316930 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 186110 326230 1962.4 370370 167220 160630 145980 369870 380800 281900 326810 173300 304570 16994 371580 159930 181280 156450 362870 375200 278940 316930 1 1 1 1 1 1 1 1 1 1 1 63457000 8164200 55293000 671 2716 637 3716;3717;3718;3719;3720 4494;4495;4496;4497 4497 4 AGAGALLR Unmodified 727.43407 0.43407249 995 P41219;P41219-2 PRPH Peripherin yes no 0 0 0 0 By MS/MS 6 0 1 1 28.827 28.811 2 0.10714 5179 20211116_3434_TMUAki_TMT10x_P_F6 46.766 11.566 19721 27975 344.05 28869 29975 38155 23109 18984 21770 22467 22676 18365 26107 2099.3 29527 28589 37866 23758 20373 22238 21799 21847 1 1 1 1 1 1 1 1 1 1 1 19721 27975 344.05 28869 29975 38155 23109 18984 21770 22467 22676 18365 26107 2099.3 29527 28589 37866 23758 20373 22238 21799 21847 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 452090 452090 0 672 995 638 3721 4498 4498 1 AGAGLGDGERK Unmodified 1029.5203 0.52032131 2715 Q9BXP5;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3 SRRT Serrate RNA effector molecule homolog yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 28.942 28.929 3 0.01245 5922 20211116_3431_TMUAki_TMT10x_P_F4 60.691 21.367 558110 858360 1535.1 801990 717940 887180 613190 435020 415550 430200 625930 519640 800730 46289 823420 685610 888390 621340 464970 438870 420360 597300 2 2 1 2 2 2 2 2 2 2 2 558110 858360 1535.1 801990 717940 887180 613190 435020 415550 430200 625930 519640 800730 46289 823420 685610 888390 621340 464970 438870 420360 597300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15081000 15081000 0 673 2715 639 3722;3723 4499 4499 1 AGAGPGGPPQKPAPSSQR Unmodified 1658.8489 0.84886609 3318 Q9Y5J1 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 29.647 29.68 3 2.5841E-17 7796 20211116_3439_TMUAki_TMT10x_S_F1 148.15 128.88 226260 394710 5586.9 363270 258940 276290 261020 162450 192700 171950 266930 210710 368190 24423 371510 248670 284270 262540 171200 201670 167550 255200 2 2 2 2 2 2 2 2 2 2 2 85114 153350 5359.2 131600 110480 172120 101880 66477 73852 62144 99404 79290 143010 12406 136400 106040 170470 102920 72790 77265 60872 95101 1 1 1 1 1 1 1 1 1 1 1 141140 241360 227.69 231670 148460 104170 159140 95977 118850 109810 167520 131420 225180 12016 235120 142630 113800 159620 98410 124400 106670 160100 1 1 1 1 1 1 1 1 1 1 1 13055000 6007300 7047600 674 3318 640 3724;3725 4500;4501 4501 2 AGAGSAAVSGAGTPVAGPTGR Acetyl (Protein N-term) 1752.8755 0.87547477 419 O95295 SNAPIN SNARE-associated protein Snapin yes yes 1 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 39.116 39.159 2 4.0526E-89 10842 20211116_3442_TMUAki_TMT10x_S_F4 176.89 154.75 23480 37104 1749.3 62463 128580 112780 63236 74683 118130 61508 67223 21875 34717 5048.9 62684 121750 110930 69259 77461 115970 60615 66424 1 1 1 1 1 1 1 1 1 1 1 23480 37104 1749.3 62463 128580 112780 63236 74683 118130 61508 67223 21875 34717 5048.9 62684 121750 110930 69259 77461 115970 60615 66424 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14244000 14244000 0 675 419 641 3726;3727 4502;4503 4503 2 AGAGSATLSMAYAGAR Oxidation (M) 1469.6933 0.69327665 989 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 6.49 2.35 5 1 2 11 16 20 15 34.643 34.924 2;3 3.9265E-16 8230 20211116_3435_TMUAki_TMT10x_P_F7 159 132.66 7971300 12573000 155790 14363000 14945000 14120000 9513800 9050000 9630600 7874300 10912000 7422800 11738000 810400 14523000 14200000 14285000 9937900 9422100 9837900 7738900 10487000 52 52 20 52 52 52 52 52 52 52 52 5542300 8704300 122670 9921800 12572000 12384000 7391600 6730000 7255700 5753400 7685900 5161100 8126600 597540 10073000 11929000 12337000 7764300 7098700 7402600 5659300 7400900 39 39 15 39 39 39 39 39 39 39 39 2428900 3868600 33119 4441300 2373600 1735700 2122200 2320000 2374900 2120900 3226300 2261700 3611900 212860 4450000 2270400 1948300 2173600 2323400 2435200 2079600 3085900 13 13 5 13 13 13 13 13 13 13 13 1254700000 1041900000 212810000 676 989 642 3728;3729;3730;3731;3732;3733;3734;3735;3736;3737;3738;3739;3740;3741;3742;3743;3744;3745;3746;3747;3748;3749;3750;3751;3752;3753;3754;3755;3756;3757;3758;3759;3760;3761;3762 4504;4505;4506;4507;4508;4509;4510;4511;4512;4513;4514;4515;4516;4517;4518;4519;4520;4521;4522;4523;4524;4525;4526;4527;4528;4529;4530;4531;4532;4533;4534;4535;4536;4537;4538;4539;4540;4541;4542;4543;4544;4545;4546;4547;4548;4549;4550;4551;4552;4553;4554;4555;4556;4557;4558;4559;4560;4561;4562;4563 4530 1269 60 AGAGSATLSMAYAGAR Unmodified 1453.6984 0.69836203 989 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.18 3.19 4 3 4 6 5 45.019 45.054 2;3 4.9687E-124 13449 20211116_3435_TMUAki_TMT10x_P_F7 385.3 344.27 16566000 26276000 271230 32589000 22453000 18756000 17797000 11389000 9735600 11457000 19089000 15426000 24542000 1579700 32594000 21420000 19795000 18046000 11954000 10589000 11187000 18125000 11 11 6 11 11 11 11 11 11 11 11 9112500 14353000 165370 17066000 16622000 14403000 11846000 5698800 4988900 5953500 10333000 8485300 13403000 937660 17178000 15823000 14641000 12053000 6241100 5565000 5804000 9802200 5 5 2 5 5 5 5 5 5 5 5 7453500 11924000 105870 15524000 5830400 4353300 5951300 5690400 4746800 5503400 8756400 6940300 11140000 642010 15416000 5596600 5153900 5993000 5712600 5024000 5382600 8322800 6 6 4 6 6 6 6 6 6 6 6 2955900000 2031200000 924760000 677 989 642 3763;3764;3765;3766;3767;3768;3769;3770;3771;3772;3773 4564;4565;4566;4567;4568;4569;4570;4571;4572;4573;4574;4575;4576 4566 13 AGAHLQGGAK Unmodified 908.48281 0.48281359 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS 4.43 1.4 1 1 1 2 2 5 2 25.685 25.616 2;3 3.6882E-06 5385 20211116_3433_TMUAki_TMT10x_P_F5 145.63 64.337 13369000 20659000 307520 18786000 16650000 17700000 16283000 11079000 12541000 11286000 16667000 12450000 19270000 1432500 19281000 15974000 17950000 16420000 11605000 13069000 11014000 15950000 6 6 3 6 6 6 6 6 6 6 6 8131600 12311000 171980 11138000 11589000 12795000 9322400 6582800 7550300 6738500 10296000 7572600 11483000 876700 11470000 11065000 12793000 9519700 7011100 7856200 6574700 9847600 4 4 2 4 4 4 4 4 4 4 4 5237500 8347900 135550 7648000 5061200 4905200 6960500 4496500 4990900 4547000 6370100 4877600 7786900 555790 7810700 4908700 5157100 6900000 4593900 5212500 4438800 6102300 2 2 1 2 2 2 2 2 2 2 2 564360000 387460000 176900000 678 489 643 3774;3775;3776;3777;3778;3779;3780 4577;4578;4579;4580;4581;4582 4580 6 AGAHLQGGAKR Unmodified 1064.5839 0.58392462 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 1 By MS/MS By MS/MS 3.33 3.3 4 2 3 3 23.672 23.756 3;4 3.2129E-08 5979 20211116_3439_TMUAki_TMT10x_S_F1 145.25 109.83 33741000 48841000 0 60777000 3080600 11723000 12293000 8906500 8021900 6137800 7912300 31415000 45618000 268760 60426000 3017000 14905000 11856000 9114700 8343900 6108600 7636100 6 6 0 6 4 6 6 6 6 6 6 15914000 11752000 0 15758000 2356500 6329600 4946300 3277900 3493000 2690900 3612700 14817000 10981000 210870 15652000 2319300 6961200 4836900 3469200 3621400 2652200 3481300 3 3 0 3 3 3 3 3 3 3 3 17827000 37089000 0 45018000 724120 5393000 7347100 5628500 4528900 3447000 4299600 16599000 34637000 57889 44773000 697690 7943500 7018900 5645500 4722600 3456400 4154800 3 3 0 3 1 3 3 3 3 3 3 481650000 216490000 265170000 679 489 644 3781;3782;3783;3784;3785;3786 4583;4584;4585;4586;4587;4588 4587 6 AGAIAPCEVTVPAQNTGLGPEK Unmodified 2179.0943 0.094317676 508 P05388;P05388-2;Q8NHW5 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 0 0 0 0 By MS/MS By MS/MS 5.25 0.901 4 5 6 1 8 8 57.354 57.484 2;3;4 2.5499E-56 16496 20211116_3434_TMUAki_TMT10x_P_F6 237.07 209.41 68438000 119080000 1346700 126740000 93122000 120480000 75969000 96644000 95943000 90848000 96927000 63732000 111140000 6298700 128660000 88933000 122590000 78574000 99290000 96766000 88965000 93472000 19 19 12 19 19 19 19 19 19 19 19 35092000 60711000 628080 65442000 66286000 93558000 53149000 50056000 51293000 47300000 50342000 32678000 56668000 2982600 66848000 63261000 92599000 54540000 53007000 52230000 46309000 48593000 10 10 6 10 10 10 10 10 10 10 10 33346000 58366000 718630 61296000 26836000 26923000 22820000 46588000 44650000 43548000 46585000 31054000 54472000 3316100 61811000 25672000 29989000 24033000 46284000 44537000 42656000 44879000 9 9 6 9 9 9 9 9 9 9 9 35925000000 20738000000 15187000000 680 508 645 3787;3788;3789;3790;3791;3792;3793;3794;3795;3796;3797;3798;3799;3800;3801;3802 4589;4590;4591;4592;4593;4594;4595;4596;4597;4598;4599;4600;4601;4602;4603;4604;4605;4606;4607;4608 4598 20 AGAKPDQIGIITPYEGQR Unmodified 1913.0007 0.0006752871 2376 Q92900;Q92900-2 UPF1 Regulator of nonsense transcripts 1 yes no 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 49.389 49.681 3 2.4195E-15 15772 20211116_3446_TMUAki_TMT10x_S_F7 133.93 122.99 9764700 16797000 153690 19120000 17216000 22588000 12574000 16578000 16858000 14315000 14412000 9092700 15682000 1012000 19394000 16398000 22662000 13130000 17091000 16876000 14074000 13978000 4 4 2 4 4 4 4 4 4 4 4 7272200 12126000 153690 14099000 15334000 20690000 11124000 12077000 12694000 10414000 10357000 6772100 11322000 839510 14343000 14605000 20478000 11552000 12664000 12762000 10239000 10063000 3 3 2 3 3 3 3 3 3 3 3 2492500 4671200 0 5021100 1882500 1897500 1449600 4500400 4164000 3900700 4055000 2320500 4360000 172440 5050900 1792400 2184200 1577100 4426400 4113500 3834300 3915100 1 1 0 1 1 1 1 1 1 1 1 2191500000 1675700000 515820000 681 2376 646 3803;3804;3805;3806 4609;4610;4611;4612;4613 4613 5 AGALHAQVER Unmodified 1050.557 0.55704117 2629 Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 27.227 27.168 2;3 9.3734E-05 5136 20211116_3431_TMUAki_TMT10x_P_F4 116.13 89.617 543440 827540 2168.9 788840 663880 828370 681850 559060 543150 525560 687200 506000 772040 43380 808070 637020 835400 686390 581000 563750 514670 658460 7 7 3 7 7 7 7 7 7 7 7 324040 488050 2168.9 473360 439750 630910 393410 364700 356100 341430 425340 301730 455350 26205 486300 420560 627030 400320 383540 366360 334420 408170 6 6 3 6 6 6 6 6 6 6 6 219400 339490 0 315480 224130 197460 288440 194360 187050 184130 261870 204270 316690 17174 321770 216460 208370 286080 197460 197380 180250 250300 1 1 0 1 1 1 1 1 1 1 1 14179000 7080200 7099000 682 2629 647 3807;3808;3809 4614;4615;4616;4617;4618;4619;4620 4616 7 AGATSEGVLANFFNSLLSK Unmodified 1924.9894 0.9894419 3350 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 82.343 82.326 3 2.0368E-41 27636 20211116_3431_TMUAki_TMT10x_P_F4 213.91 181.52 4495600 7192300 0 6674400 4781200 7165800 5740400 3957500 4090400 4232500 4933300 4185300 6709200 299260 6853000 4603500 7197700 5721500 4193900 4263400 4122400 4732900 2 2 0 2 2 2 2 2 2 2 2 2865700 4059900 0 3766800 2587600 4690100 2813300 2076100 2380700 2786000 2530000 2668000 3787200 195900 3877200 2484300 4662300 2828500 2264000 2446200 2691700 2435900 1 1 0 1 1 1 1 1 1 1 1 1629900 3132400 0 2907700 2193600 2475700 2927100 1881500 1709700 1446500 2403400 1517300 2922000 103360 2975700 2119200 2535400 2893000 1929900 1817200 1430600 2297000 1 1 0 1 1 1 1 1 1 1 1 1357300000 543760000 813550000 683 3350 648 3810;3811;3812;3813;3814 4621;4622 4621 2 AGATSEGVLANFFNSLLSKK Unmodified 2053.0844 0.084404917 3350 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 yes yes 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 80.315 80.315 3;4 2.129E-13 25882 20211116_3434_TMUAki_TMT10x_P_F6 137.05 133.39 3007400 4968000 8240.9 4499500 3183400 4524500 3616700 2474600 2172400 2660500 3230400 2800200 4633900 259480 4623700 3063800 4561600 3601200 2625000 2310800 2590800 3083500 2 2 2 2 2 2 2 2 2 2 2 1713800 2777300 6071 2482400 1593800 2979200 1895300 1465900 1119300 1421700 1644900 1595700 2590400 146060 2560800 1536100 2970400 1882700 1565500 1191300 1390300 1570500 1 1 1 1 1 1 1 1 1 1 1 1293600 2190700 2169.9 2017000 1589700 1545300 1721400 1008700 1053200 1238900 1585500 1204500 2043500 113420 2062900 1527700 1591300 1718500 1059600 1119500 1200400 1513000 1 1 1 1 1 1 1 1 1 1 1 1242100000 650280000 591860000 684 3350 649 3815;3816 4623;4624 4623 2 AGAVAEEVLAAIR Unmodified 1268.7089 0.70885036 550 P08183;P08183-2 ABCB1 Multidrug resistance protein 1 yes no 0 0 0 0 By MS/MS 5 0 1 1 78.137 78.148 2 3.3411E-05 25055 20211116_3444_TMUAki_TMT10x_S_F5 87.298 43.786 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 685 550 650 3817 4625 4625 1 AGCECLNESDEHGFDNCLR Unmodified 2281.8787 0.87866395 213 O43396 TXNL1 Thioredoxin-like protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 40.438 40.27 3 7.6962E-32 11702 20211116_3429_TMUAki_TMT10x_P_F2 192.16 187.45 410490 779540 0 946480 883520 1138700 683640 713280 669390 665510 726700 382160 728020 35084 956650 841770 1138600 703450 745250 683640 651940 699240 2 2 0 2 2 2 2 2 2 2 2 280930 538620 0 655360 783520 1032100 583120 484860 448250 469880 497360 261560 503030 28245 665960 746110 1015900 597790 520140 463660 459530 478260 1 1 0 1 1 1 1 1 1 1 1 129560 240920 0 291120 99992 106610 100520 228420 221140 195620 229340 120610 224990 6839.2 290690 95664 122730 105660 225110 219980 192410 220980 1 1 0 1 1 1 1 1 1 1 1 174870000 125200000 49668000 686 213 651 3818;3819;3820 4626;4627 4626 2 AGCECLNESDEHGFDNCLRK Unmodified 2409.9736 0.97362697 213 O43396 TXNL1 Thioredoxin-like protein 1 yes yes 0 0 0 1 By MS/MS 4 0 1 1 39.736 39.787 4 3.0585E-25 10280 20211116_3431_TMUAki_TMT10x_P_F4 177.6 168.99 1771200 2779000 6860.2 3767400 5160300 5038500 2517300 2357900 2603200 1943300 2932400 1649200 2596800 195700 3792500 4881600 4994200 2694300 2520300 2656300 1915000 2818600 2 2 1 2 2 2 2 2 2 2 2 1771200 2779000 6860.2 3767400 5160300 5038500 2517300 2357900 2603200 1943300 2932400 1649200 2596800 195700 3792500 4881600 4994200 2694300 2520300 2656300 1915000 2818600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 209850000 209850000 0 687 213 652 3821 4628;4629 4628 2 AGDEIDEPSERER Unmodified 1501.6645 0.66447894 2517 Q96ME7;Q96ME7-2;Q96ME7-3 ZNF512 Zinc finger protein 512 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 26.133 26.185 3 0.00018929 5240 20211116_3428_TMUAki_TMT10x_P_F1 87.216 66.553 54841 99215 482.15 86479 90600 86495 68166 56369 66523 83283 93425 51054 92531 3997.1 89122 86239 87437 70266 59638 68702 80230 89291 2 2 1 2 2 2 2 2 2 2 2 34180 62695 0 50691 56912 59030 38814 31529 44021 41518 54198 31813 58456 1652.4 52686 54017 59003 40478 33744 44917 40137 51968 1 1 0 1 1 1 1 1 1 1 1 20661 36520 482.15 35787 33688 27465 29352 24839 22502 41765 39227 19241 34075 2344.7 36436 32222 28434 29788 25894 23785 40093 37323 1 1 1 1 1 1 1 1 1 1 1 2142900 1289200 853680 688 2517 653 3822;3823 4630;4631 4630 2 AGDFLENHYR Unmodified 1220.5574 0.5574351 52 CON__Q2UVX4 yes yes 0 0 0 0 By MS/MS 4 0 2 2 36.724 36.856 3 3.6915E-09 9577 20211116_3442_TMUAki_TMT10x_S_F4 135.86 116.25 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 689 52 654 3824;3825 4632;4633 4633 2 AGDLRDTGIFLDLMHLK Oxidation (M) 1929.9982 0.99823245 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 1 1 By MS/MS By MS/MS 6.83 0.687 2 3 1 2 4 70.138 70.253 3;4 1.0554E-05 21822 20211116_3447_TMUAki_TMT10x_S_F8 96.054 77.222 39587000 63041000 906120 61778000 49044000 71959000 45612000 62777000 62703000 55844000 55469000 36866000 58819000 4256100 63265000 46995000 72473000 46975000 64083000 62785000 54826000 53733000 9 9 8 9 9 9 9 9 9 9 9 23630000 37314000 595330 35342000 26301000 54002000 27751000 38924000 39472000 35794000 32766000 22006000 34811000 2551300 36473000 25291000 53524000 28436000 40243000 39405000 35087000 31816000 5 5 5 5 5 5 5 5 5 5 5 15957000 25727000 310780 26436000 22743000 17957000 17862000 23852000 23230000 20050000 22704000 14860000 24008000 1704700 26792000 21703000 18949000 18539000 23840000 23379000 19739000 21918000 4 4 3 4 4 4 4 4 4 4 4 7886000000 3467800000 4418200000 690 647 655 3826;3827;3828;3829;3830;3831 4634;4635;4636;4637;4638;4639;4640;4641;4642 4642 688 9 AGDLRDTGIFLDLMHLK Unmodified 1914.0033 0.003317824 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 77.872 77.879 4 2.2E-05 24947 20211116_3447_TMUAki_TMT10x_S_F8 91.065 57.518 15726000 26556000 68749 25416000 21838000 13502000 17796000 7984700 5524300 8028300 14952000 14642000 24775000 1353600 25831000 20835000 14366000 17883000 8398100 6491600 7839100 14132000 3 3 1 3 3 3 3 3 3 3 3 5431600 8437600 0 7435400 5069800 5889300 5929000 2504400 1875600 2223200 4289400 5056900 7869500 388640 7633000 4879100 6019000 5843600 2708700 2171100 2182900 4063100 1 1 0 1 1 1 1 1 1 1 1 10294000 18118000 68749 17981000 16768000 7613100 11867000 5480300 3648700 5805200 10662000 9585300 16905000 965010 18198000 15956000 8347300 12039000 5689300 4320400 5656200 10068000 2 2 1 2 2 2 2 2 2 2 2 3680600000 1514200000 2166300000 691 647 655 3832;3833;3834 4643;4644;4645 4645 3 AGDMENAENILTVMR 2 Oxidation (M) 1694.7604 0.76036994 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 2 0 By MS/MS By MS/MS 2.67 0.471 2 4 3 3 46.896 46.723 2;3 0.0011897 14620 20211116_3430_TMUAki_TMT10x_P_F3 64.201 59.903 6255900 11109000 204920 12033000 9686200 11639000 7558200 9433000 9125600 7619100 9655000 5826300 10370000 750540 12205000 9246000 11832000 7826400 9647800 9233900 7516000 9297400 6 6 4 6 6 6 6 6 6 6 6 3100100 5737100 173030 6455600 7094300 8620600 4876200 4847200 4988500 4294400 5168600 2887700 5356000 468160 6567400 6756700 8563800 5065600 5102200 5076400 4216900 4980400 3 3 2 3 3 3 3 3 3 3 3 3155800 5372200 31889 5577600 2591900 3018400 2682000 4585800 4137100 3324800 4486400 2938600 5013600 282380 5637300 2489400 3268100 2760800 4545700 4157500 3299100 4317000 3 3 2 3 3 3 3 3 3 3 3 971180000 668700000 302470000 692 1018 656 3835;3836;3837;3838;3839;3840 4646;4647;4648;4649;4650;4651 4647 1308;1309 6 AGDREDITEPAICALR Unmodified 1785.8679 0.86794655 923 P35222 CTNNB1 Catenin beta-1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 45.144 44.989 3 5.5518E-43 13906 20211116_3430_TMUAki_TMT10x_P_F3 231.21 200.73 16404000 27319000 239760 33481000 25894000 27246000 16738000 22578000 23064000 19872000 22838000 15275000 25515000 1599700 33628000 24605000 28036000 17652000 23110000 23179000 19520000 22038000 9 9 5 9 9 9 9 9 9 9 9 9015800 14521000 50357 17835000 18286000 21829000 11860000 11703000 11603000 10868000 12026000 8394600 13562000 874340 18020000 17372000 21764000 12358000 12384000 11830000 10649000 11588000 5 5 2 5 5 5 5 5 5 5 5 7388700 12798000 189400 15647000 7607400 5416700 4877700 10875000 11461000 9004200 10812000 6880500 11952000 725370 15608000 7232900 6271800 5294100 10726000 11348000 8871100 10450000 4 4 3 4 4 4 4 4 4 4 4 1128500000 694980000 433550000 693 923 657 3841;3842;3843;3844 4652;4653;4654;4655;4656;4657;4658;4659;4660 4655 9 AGDRQPEWLEEQQGR Unmodified 1797.8394 0.83942362 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 36.015 36.015 3 9.2026E-33 9943 20211116_3429_TMUAki_TMT10x_P_F2 197.47 183.44 307400 481610 0 754390 1282600 845150 508040 398190 387700 353340 494100 286170 450420 32968 751690 1209900 845340 552110 426060 403460 346940 473340 1 1 0 1 1 1 1 1 1 1 1 307400 481610 0 754390 1282600 845150 508040 398190 387700 353340 494100 286170 450420 32968 751690 1209900 845340 552110 426060 403460 346940 473340 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 61819000 61819000 0 694 1741 658 3845;3846 4661;4662 4662 2 AGDTLSGTCLLIANKR Unmodified 1688.888 0.88795372 2124 Q86X55;Q86X55-1 CARM1 Histone-arginine methyltransferase CARM1 yes no 0 0 0 1 By MS/MS 1 0 1 1 52.489 52.489 3 8.3688E-67 15035 20211116_3428_TMUAki_TMT10x_P_F1 271.08 239.65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 695 2124 659 3847 4663 4663 1 AGDTVIPLYIPQCGECK Unmodified 1919.9121 0.91211956 631 P11766 ADH5 Alcohol dehydrogenase class-3 yes yes 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 69.535 69.585 3 4.0637E-15 23451 20211116_3435_TMUAki_TMT10x_P_F7 128.71 116.35 20575000 32611000 21965 33385000 22643000 31723000 22669000 20865000 18563000 20287000 24216000 19157000 30432000 1680300 33978000 21708000 32176000 22865000 21744000 19265000 19837000 23185000 7 7 1 7 7 7 7 7 7 7 7 13194000 20451000 21965 20317000 14805000 25128000 16227000 13451000 12063000 13303000 16176000 12285000 19082000 1093900 20808000 14230000 25040000 16256000 14261000 12600000 12999000 15477000 5 5 1 5 5 5 5 5 5 5 5 7380800 12160000 0 13068000 7838400 6594900 6442100 7414000 6499800 6984000 8040200 6872000 11350000 586420 13170000 7478600 7136100 6609200 7483800 6664500 6838700 7708400 2 2 0 2 2 2 2 2 2 2 2 4001000000 1956300000 2044600000 696 631 660 3848;3849;3850;3851;3852;3853 4664;4665;4666;4667;4668;4669;4670;4671 4669 8 AGDTVSYVICQDGSNLTASQR Unmodified 2241.0332 0.033173982 587 P09884 POLA1 DNA polymerase alpha catalytic subunit yes yes 0 0 0 0 By MS/MS 5 0 1 1 57.237 57.428 3 1.0293E-10 17704 20211116_3433_TMUAki_TMT10x_P_F5 116.98 80.337 1347400 2254100 0 2587800 2518600 3407100 2015700 1793400 1612100 1658300 1810000 1254500 2104600 113880 2628600 2401400 3384200 2058500 1900800 1664700 1625200 1739900 1 1 0 1 1 1 1 1 1 1 1 1347400 2254100 0 2587800 2518600 3407100 2015700 1793400 1612100 1658300 1810000 1254500 2104600 113880 2628600 2401400 3384200 2058500 1900800 1664700 1625200 1739900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 445530000 445530000 0 697 587 661 3854 4672 4672 1 AGDVEEDASQLIFPK Unmodified 1617.7886 0.78861683 194 O15514 POLR2D DNA-directed RNA polymerase II subunit RPB4 yes yes 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 2 3 73.533 73.373 3 3.0309E-14 25580 20211116_3430_TMUAki_TMT10x_P_F3 143.86 132.06 22690000 39426000 337000 36911000 25748000 31956000 26944000 22749000 21937000 22940000 28697000 21129000 36779000 2209200 37759000 24737000 32653000 27113000 23600000 22776000 22397000 27473000 9 9 7 9 9 9 9 9 9 9 9 10381000 16457000 52061 14775000 10044000 18571000 11736000 10090000 9596100 10112000 12499000 9666200 15349000 875560 15248000 9674300 18494000 11750000 10687000 9959100 9874800 11968000 4 4 2 4 4 4 4 4 4 4 4 12309000 22970000 284930 22136000 15705000 13385000 15208000 12659000 12340000 12828000 16197000 11463000 21430000 1333600 22510000 15063000 14159000 15363000 12912000 12817000 12522000 15506000 5 5 5 5 5 5 5 5 5 5 5 2167200000 1163700000 1003500000 698 194 662 3855;3856;3857;3858;3859 4673;4674;4675;4676;4677;4678;4679;4680;4681 4675 9 AGEAGKLEEVMQELR Unmodified 1658.8298 0.82977013 2632 Q9BR76 CORO1B Coronin-1B yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 0.957 1 2 2 1 2 4 69.125 68.966 3 1.5936E-06 22613 20211116_3442_TMUAki_TMT10x_S_F4 107.57 84.692 17098000 27108000 130730 29137000 18967000 18469000 18716000 11283000 10264000 12018000 19382000 15921000 25302000 1545800 29422000 18186000 19312000 18736000 11856000 11135000 11707000 18415000 3 3 2 3 3 3 3 3 3 3 3 6538800 9507100 0 9821100 6432700 9374500 7481700 4041100 3583900 4223900 6974300 6088100 8872300 520860 9990300 6193000 9457800 7413500 4383300 3936900 4117700 6622900 1 1 0 1 1 1 1 1 1 1 1 10559000 17601000 130730 19316000 12534000 9094500 11234000 7241700 6679600 7794000 12408000 9832700 16430000 1024900 19432000 11993000 9853700 11322000 7472900 7197900 7589200 11792000 2 2 2 2 2 2 2 2 2 2 2 1332400000 475440000 856980000 699 2632 663 3860;3861;3862;3863;3864;3865 4682;4683;4684;4685 4685 4 AGEARPGPTAESASGPSEDPSVNFLK Unmodified 2570.2249 0.22487416 1638 Q13501;Q13501-2 SQSTM1 Sequestosome-1 yes no 0 0 0 1 By MS/MS 4 0 1 1 49.632 49.764 4 2.8749E-17 14722 20211116_3442_TMUAki_TMT10x_S_F4 128.29 106.49 1176200 2027900 0 2094400 1233600 1123900 841830 1931300 1862300 1701200 1843900 1094900 1892500 67052 2117400 1171000 1223000 905980 1916000 1849300 1671000 1779300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1176200 2027900 0 2094400 1233600 1123900 841830 1931300 1862300 1701200 1843900 1094900 1892500 67052 2117400 1171000 1223000 905980 1916000 1849300 1671000 1779300 1 1 0 1 1 1 1 1 1 1 1 225070000 0 225070000 700 1638 664 3866 4686 4686 1 AGEGNEEISNMIHSYIK Oxidation (M) 1906.8731 0.87309151 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4;Q7Z4S6-6 KIF21A Kinesin-like protein KIF21A yes no 0 0 1 0 By MS/MS By MS/MS 4.71 0.7 3 3 1 3 4 50.828 50.986 3 3.7694E-10 15297 20211116_3433_TMUAki_TMT10x_P_F5 114.27 94.697 9278100 15960000 187050 18640000 12580000 14182000 9304000 12138000 13063000 11759000 13332000 8640300 14902000 989790 18760000 11991000 14676000 9725200 12433000 13135000 11500000 12852000 5 5 5 5 5 5 5 5 5 5 5 4018400 6296300 102090 7631300 7966600 9456700 5837400 4666600 5136700 4771600 5199400 3742200 5880100 483590 7718200 7591400 9413600 6010800 4989600 5258600 4655900 5013700 2 2 2 2 2 2 2 2 2 2 2 5259800 9663200 84955 11009000 4613600 4724900 3466600 7471900 7926500 6986900 8132500 4898000 9021800 506200 11042000 4400100 5262700 3714400 7443800 7876000 6843800 7838800 3 3 3 3 3 3 3 3 3 3 3 935950000 385580000 550370000 701 2082 665 3867;3868;3869;3870;3871;3872;3873 4687;4688;4689;4690;4691;4692;4693;4694 4690 2582 8 AGEGNEEISNMIHSYIK Unmodified 1890.8782 0.87817689 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4;Q7Z4S6-6 KIF21A Kinesin-like protein KIF21A yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 65.611 65.697 3 1.5023E-05 21061 20211116_3433_TMUAki_TMT10x_P_F5 89.261 72.183 8477100 13453000 70336 16635000 11243000 11421000 9242400 8280800 8087000 7941600 10571000 7893500 12565000 807100 16668000 10734000 11886000 9443800 8567600 8365800 7770100 10120000 2 2 2 2 2 2 2 2 2 2 2 3850600 5492400 49190 7156700 5997000 7249700 4970300 3601300 3475700 3445100 4553800 3585700 5131200 395150 7184800 5727400 7297800 5049000 3841000 3639600 3371100 4359500 1 1 1 1 1 1 1 1 1 1 1 4626400 7960300 21146 9478600 5246100 4170900 4272100 4679500 4611300 4496500 6016700 4307800 7433500 411950 9483200 5007000 4587800 4394800 4726600 4726200 4399100 5760600 1 1 1 1 1 1 1 1 1 1 1 809580000 464700000 344880000 702 2082 665 3874;3875 4695;4696 4695 2 AGEIELELQR Unmodified 1156.6088 0.60880197 2276 Q8TD30 GPT2 Alanine aminotransferase 2 yes yes 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 2 3 50.928 50.667 2 0.0034179 16293 20211116_3430_TMUAki_TMT10x_P_F3 76.228 39.534 11003000 19784000 209580 19186000 14789000 16147000 12749000 15480000 16307000 13478000 16708000 10247000 18459000 1160600 19570000 14141000 16622000 13149000 15713000 16448000 13246000 16105000 4 4 4 4 4 4 4 4 4 4 4 3959500 7037900 89554 7204100 6155800 9135600 5695400 5690200 6256300 4873100 6143600 3687300 6567700 442490 7366500 5896300 9110200 5818500 5934800 6336200 4793000 5930000 1 1 1 1 1 1 1 1 1 1 1 7043600 12746000 120030 11982000 8632700 7011800 7053500 9790200 10050000 8605100 10564000 6559200 11891000 718090 12203000 8245000 7512200 7330000 9778300 10111000 8453000 10175000 3 3 3 3 3 3 3 3 3 3 3 566610000 284380000 282230000 703 2276 666 3876;3877;3878;3879;3880 4697;4698;4699;4700;4701 4698 5 AGELTEDEVER Unmodified 1246.5677 0.56772501 1345 P62269 RPS18 40S ribosomal protein S18 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 35.553 35.536 2 7.1436E-38 10111 20211116_3439_TMUAki_TMT10x_S_F1 285.62 239.92 2213700 4232300 0 2497300 5818000 4652300 3434500 4253000 4169600 3220800 4876300 2061100 3942700 216630 2702400 5517500 4597600 3631100 4313400 4234700 3188100 4682100 3 3 0 3 3 3 3 3 3 3 3 584740 1052000 0 627430 2871600 2135300 526160 1093000 1107200 781290 1180800 544430 980010 78779 692610 2694300 2058800 674330 1154500 1103600 775890 1136800 1 1 0 1 1 1 1 1 1 1 1 1629000 3180400 0 1869900 2946400 2517100 2908300 3160000 3062400 2439500 3695500 1516600 2962700 137860 2009800 2823200 2538800 2956800 3158900 3131200 2412200 3545300 2 2 0 2 2 2 2 2 2 2 2 349030000 195160000 153870000 704 1345 667 3881;3882 4702;4703;4704 4703 3 AGEMELKPFNGEDYTCITFQPDLSK Oxidation (M) 2905.315 0.31501107 625 P11388;P11388-2;P11388-3;P11388-4 TOP2A DNA topoisomerase 2-alpha yes no 0 0 1 1 By matching By MS/MS 5.6 0.8 3 1 1 1 4 72.158 72.204 3;4 2.3715E-08 22937 20211116_3445_TMUAki_TMT10x_S_F6 99.064 87.099 8989800 15226000 40879 13121000 11447000 11889000 10066000 11568000 11406000 12760000 11690000 8369800 14200000 715590 13516000 10937000 12181000 10324000 11813000 11555000 12413000 11268000 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8989800 15226000 40879 13121000 11447000 11889000 10066000 11568000 11406000 12760000 11690000 8369800 14200000 715590 13516000 10937000 12181000 10324000 11813000 11555000 12413000 11268000 4 4 2 4 4 4 4 4 4 4 4 3852600000 747040000 3105500000 705 625 668 3883;3884;3885;3886;3887 4705;4706;4707 4707 642 3 AGEQLAPFLPQLVPR Unmodified 1634.9144 0.91442646 1953 Q5VYK3 ECM29 Proteasome-associated protein ECM29 homolog yes yes 0 0 0 0 By MS/MS 1 0 1 1 77.889 77.889 2 4.7454E-06 25406 20211116_3428_TMUAki_TMT10x_P_F1 92.925 51.477 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 706 1953 670 3888 4708 4708 1 AGERPELCR Unmodified 1086.524 0.52402648 728 P19174-2;P19174 PLCG1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 26.95 26.685 3 1.4827E-05 7877 20211116_3441_TMUAki_TMT10x_S_F3 154.85 127.89 242480 397240 0 337650 262670 290840 261500 194990 199840 179710 274530 225760 370450 19335 347970 251770 297020 263410 202630 208650 176150 262510 2 2 0 2 2 2 2 2 2 2 2 92563 160910 0 123060 109710 160290 105430 95489 90323 81901 120990 86184 150000 7818 128770 105080 159540 106700 99950 93637 80549 115760 1 1 0 1 1 1 1 1 1 1 1 149920 236330 0 214590 152960 130550 156070 99501 109510 97812 153540 139580 220440 11517 219200 146690 137480 156700 102680 115010 95598 146750 1 1 0 1 1 1 1 1 1 1 1 8286900 1671200 6615700 707 728 671 3889;3890 4709;4710 4710 2 AGESVLVHGASGGVGLAACQIAR Unmodified 2179.1168 0.11678445 1547 Q08257;Q08257-3;Q08257-2 CRYZ Quinone oxidoreductase yes no 0 0 0 0 By MS/MS 7 0 1 1 50.978 51.47 3 3.7967E-25 16432 20211116_3446_TMUAki_TMT10x_S_F7 158.44 137.19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 708 1547 672 3891 4711 4711 1 AGEVFIHK Unmodified 899.4865 0.48650199 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 0 By MS/MS By MS/MS 4.8 1.47 1 1 2 2 3 1 5 5 38.52 38.567 3 0.0011547 8749 20211116_3445_TMUAki_TMT10x_S_F6 101.99 60.009 12183000 18005000 157640 19928000 13562000 14305000 13071000 9547700 10138000 9894700 13154000 11344000 16807000 1152000 20110000 13000000 14813000 13194000 9957900 10549000 9649400 12596000 14 14 9 14 14 14 14 14 14 14 14 6392300 8942000 85335 10031000 8231000 9530700 6551200 4629700 5129000 4828300 6662300 5952400 8347900 625320 10149000 7854600 9629900 6689000 4960500 5334500 4707400 6379400 4 4 3 4 4 4 4 4 4 4 4 5790200 9062700 72309 9897200 5331000 4774600 6520200 4917900 5008800 5066400 6491600 5391700 8459600 526690 9961200 5145000 5183200 6504800 4997400 5214400 4942000 6216400 10 10 6 10 10 10 10 10 10 10 10 3076000000 1938700000 1137300000 709 1779 673 3892;3893;3894;3895;3896;3897;3898;3899;3900;3901 4712;4713;4714;4715;4716;4717;4718;4719;4720;4721;4722;4723;4724;4725;4726 4724 15 AGEVVPPAMYQFSQYVCQQTGLQIPQLPAPPK Unmodified 3541.7738 0.77378217 1956 Q5XKP0 QIL1 Protein QIL1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 81.097 81.082 4 1.6969E-06 27545 20211116_3442_TMUAki_TMT10x_S_F4 70.213 61.147 747790 1114600 0 1282000 915500 600780 1057100 387600 412750 471420 746770 696100 1040700 43470 1285900 880020 649260 1044900 407350 459950 456960 710040 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 747790 1114600 0 1282000 915500 600780 1057100 387600 412750 471420 746770 696100 1040700 43470 1285900 880020 649260 1044900 407350 459950 456960 710040 1 1 0 1 1 1 1 1 1 1 1 439510000 0 439510000 710 1956 674 3902 4727 4727 1 AGFAGDDAPR Unmodified 975.44101 0.44100836 1276;1406;1414;595 P60709;Q6S8J3;A5A3E0;P0CG38;P63261;P68133;P68032;P62736;P63267;P63267-2;P0CG39 ACTB;POTEE;POTEF;POTEI;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2;POTEJ Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle;POTE ankyrin domain family member J no no 0 0 0 0 By MS/MS By MS/MS 3.17 1.52 2 3 2 1 4 6 6 29.453 29.423 2;3 1.1553E-11 8371 20211116_3429_TMUAki_TMT10x_P_F2 216.57 157.78 88350000 150040000 302730 146360000 108620000 104760000 104390000 68796000 78259000 67373000 111290000 82253000 139990000 6335200 148950000 103960000 108480000 105300000 71720000 81931000 65858000 106340000 18 18 5 18 18 18 18 18 18 18 18 27070000 44208000 90945 44064000 42388000 49991000 27150000 21285000 26092000 21442000 32435000 25204000 41250000 2401900 45051000 40256000 49917000 28303000 23094000 26815000 20934000 31092000 6 6 1 6 6 6 6 6 6 6 6 61281000 105840000 211790 102300000 66230000 54769000 77238000 47511000 52167000 45931000 78858000 57049000 98743000 3933300 103900000 63702000 58564000 76994000 48625000 55115000 44924000 75246000 12 12 4 12 12 12 12 12 12 12 12 14867000000 8309800000 6557200000 711 1276;1406;1414;595 675 3903;3904;3905;3906;3907;3908;3909;3910;3911;3912;3913;3914 4728;4729;4730;4731;4732;4733;4734;4735;4736;4737;4738;4739;4740;4741;4742;4743;4744;4745 4729 18 AGFAGDQIPK Unmodified 1002.5134 0.51344502 1298;1005 P42025;P61163 ACTR1B;ACTR1A Beta-centractin;Alpha-centractin no no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 45.199 45.326 2 0.0014394 12798 20211116_3433_TMUAki_TMT10x_P_F5 89.698 18.174 2553800 4416900 94898 5318900 7645900 6188700 3700700 3290100 3743300 2926800 4186300 2378600 4124800 371490 5375400 7237800 6185800 3961400 3480500 3822000 2873400 4024700 1 1 1 1 1 1 1 1 1 1 1 2553800 4416900 94898 5318900 7645900 6188700 3700700 3290100 3743300 2926800 4186300 2378600 4124800 371490 5375400 7237800 6185800 3961400 3480500 3822000 2873400 4024700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 716700000 716700000 0 712 1005;1298 676 3915;3916 4746 4746 1 AGFFCPICSLFYSGEK Unmodified 1881.843 0.84297736 1738 Q14966;Q14966-5 ZNF638 Zinc finger protein 638 yes no 0 0 0 0 By MS/MS 4 0 1 1 80.011 80.02 3 3.7126E-10 26691 20211116_3431_TMUAki_TMT10x_P_F4 118.13 101.05 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 713 1738 677 3917 4747 4747 1 AGFFGTVVEYGAER Unmodified 1501.7201 0.72014333 2970 Q9NVH1;Q9NVH1-3;Q9NVH1-2 DNAJC11 DnaJ homolog subfamily C member 11 yes no 0 0 0 0 By MS/MS 6 0 1 1 68.24 68.163 2 2.6206E-14 21301 20211116_3445_TMUAki_TMT10x_S_F6 143 117.61 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 714 2970 678 3918 4748 4748 1 AGFLDLK Unmodified 762.42759 0.42759012 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS 7 0 1 1 59.192 59.924 2 0.012462 19323 20211116_3435_TMUAki_TMT10x_P_F7 92.925 21.896 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 715 3293 680 3919 4749 4749 1 AGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVR Unmodified 2874.4373 0.43726697 2475 Q96GM5;Q96GM5-2 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 56.936 56.785 4 0.0019108 16804 20211116_3428_TMUAki_TMT10x_P_F1 44.167 35.347 5167000 10150000 0 7570100 7077500 9739400 6509000 18500000 16021000 13096000 11094000 4810300 9461400 372380 7937400 6766600 9984900 6926500 18205000 15707000 13013000 10855000 3 3 0 3 3 3 3 3 3 3 3 1558800 2777000 0 2215500 2157600 3878400 2721700 4304700 3856800 3336200 3179100 1451300 2589200 129520 2324700 2082400 3858100 2766400 4326200 3849900 3298200 3087700 1 1 0 1 1 1 1 1 1 1 1 3608200 7373000 0 5354600 4920000 5861000 3787200 14195000 12164000 9759900 7915400 3359000 6872200 242860 5612700 4684200 6126800 4160100 13879000 11857000 9714800 7767200 2 2 0 2 2 2 2 2 2 2 2 1016300000 614730000 401550000 716 2475 681 3920;3921 4750 4750 1 AGFSGGMVVDYPNSAK Unmodified 1598.7399 0.73989249 237 O43709;O43709-3 WBSCR22 Probable 18S rRNA (guanine-N(7))-methyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 56.004 56.631 3 0.0001475 18480 20211116_3446_TMUAki_TMT10x_S_F7 79.346 58.095 13476000 23975000 143950 20383000 19075000 32807000 20338000 24786000 20399000 21087000 21327000 12548000 22358000 1329800 21234000 18331000 32475000 20565000 25495000 20782000 20747000 20545000 3 3 3 3 3 3 3 3 3 3 3 9399000 17012000 123150 13301000 14874000 29327000 16415000 19253000 14903000 16228000 15820000 8752400 15860000 970700 14071000 14308000 28662000 16523000 19993000 15260000 15974000 15232000 2 2 2 2 2 2 2 2 2 2 2 4076500 6963400 20799 7082700 4201100 3480100 3922900 5532900 5496100 4859300 5507300 3795800 6498100 359100 7163200 4022500 3813600 4042400 5501700 5522900 4773600 5312400 1 1 1 1 1 1 1 1 1 1 1 1186800000 631830000 554920000 717 237 682 3922;3923 4751 4751 1 AGGAARPVSLR Unmodified 1053.6043 0.60432571 2016 Q6SPF0 SAMD1 Atherin yes yes 0 0 0 1 By MS/MS By matching 1.75 0.829 2 1 1 2 2 25.95 25.846 3 0.011497 4049 20211116_3428_TMUAki_TMT10x_P_F1 60.754 35.878 251750 417000 12582 371250 351300 492290 305390 275180 298710 199280 328350 234500 388930 33992 383780 336450 489170 311960 288470 305230 197760 315830 2 2 2 2 2 2 2 2 2 2 2 251750 417000 12582 371250 351300 492290 305390 275180 298710 199280 328350 234500 388930 33992 383780 336450 489170 311960 288470 305230 197760 315830 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10174000 5725200 4448300 718 2016 683 3924;3925;3926;3927 4752;4753 4752 2 AGGAAVVITEPEHTK Unmodified 1478.7729 0.77290718 3056 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 0 By MS/MS By MS/MS 3.79 1 1 1 3 10 4 7 12 34.097 34.097 3;4 1.197E-33 9220 20211116_3431_TMUAki_TMT10x_P_F4 224.05 202.59 29184000 43004000 254990 47379000 37677000 34241000 28284000 40323000 44839000 34903000 41335000 27175000 40144000 2721400 47829000 35903000 35829000 29694000 40529000 44767000 34311000 39982000 19 19 12 19 19 19 19 19 19 19 19 10608000 15809000 89797 16203000 19310000 20349000 12551000 11492000 11908000 10656000 13821000 9877300 14753000 1039000 16563000 18348000 20276000 13064000 12107000 12211000 10441000 13273000 7 7 4 7 7 7 7 7 7 7 7 18576000 27195000 165190 31176000 18367000 13892000 15734000 28831000 32931000 24247000 27514000 17297000 25390000 1682400 31265000 17554000 15554000 16629000 28422000 32557000 23870000 26709000 12 12 8 12 12 12 12 12 12 12 12 5290700000 2906900000 2383900000 719 3056 684 3928;3929;3930;3931;3932;3933;3934;3935;3936;3937;3938;3939;3940;3941;3942;3943;3944;3945;3946 4754;4755;4756;4757;4758;4759;4760;4761;4762;4763;4764;4765;4766;4767;4768;4769;4770;4771;4772;4773;4774;4775 4757 22 AGGAAVVITEPEHTKER Unmodified 1763.9166 0.91661131 3056 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 33.252 33.238 4 0.0067478 7771 20211116_3431_TMUAki_TMT10x_P_F4 58.09 45.323 800710 1341600 17016 1607400 2165400 2355300 1190700 1691700 1668800 1363800 1659000 745540 1252800 84412 1632200 2051700 2338400 1273600 1743700 1676400 1345500 1600700 2 2 1 2 2 2 2 2 2 2 2 800710 1341600 17016 1607400 2165400 2355300 1190700 1691700 1668800 1363800 1659000 745540 1252800 84412 1632200 2051700 2338400 1273600 1743700 1676400 1345500 1600700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 298470000 298470000 0 720 3056 685 3947;3948 4776;4777 4776 2 AGGAGVPAFYTPTGYGTLVQEGGSPIK Unmodified 2594.3017 0.30166791 1248 P55809 OXCT1 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 7.75 0.433 1 3 3 1 75.685 75.659 3;4 5.3962E-42 24035 20211116_3447_TMUAki_TMT10x_S_F8 185.41 170.94 13630000 21166000 0 19616000 13409000 20200000 15224000 13127000 13101000 13713000 15208000 12689000 19744000 615440 20130000 12894000 20384000 15281000 13721000 13496000 13368000 14606000 5 5 0 5 5 5 5 5 5 5 5 9930200 15113000 0 14064000 8372500 15984000 10464000 9387000 9500200 9687100 10751000 9245400 14098000 343670 14450000 8075200 16017000 10475000 9886000 9751400 9448500 10332000 3 3 0 3 3 3 3 3 3 3 3 3699300 6052800 0 5552700 5036300 4216200 4759800 3740000 3601200 4025700 4457400 3444000 5646000 271770 5680000 4818600 4366900 4806600 3835100 3744700 3919900 4273400 2 2 0 2 2 2 2 2 2 2 2 4194500000 2724100000 1470400000 721 1248 686 3949;3950;3951;3952 4778;4779;4780;4781;4782;4783 4782 6 AGGALCHILGAAYK Unmodified 1400.7235 0.72345457 2379 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 56.004 55.699 3 2.4841E-06 19455 20211116_3441_TMUAki_TMT10x_S_F3 106.67 85.036 5974800 9505800 70799 10506000 7972100 9526600 6408800 7415300 6492900 6659100 7911700 5563500 8873700 575720 10632000 7608100 9718000 6585000 7623300 6652100 6534800 7588200 2 2 1 2 2 2 2 2 2 2 2 2909700 4585300 70799 5074800 5359000 6829700 3853100 3882600 3192900 3318900 3960700 2709700 4280400 341520 5168800 5104900 6783200 3966700 4079400 3304300 3264700 3796900 1 1 1 1 1 1 1 1 1 1 1 3065100 4920500 0 5431000 2613100 2696900 2555600 3532800 3300100 3340200 3951100 2853800 4593300 234200 5463500 2503200 2934900 2618300 3543900 3347800 3270200 3791300 1 1 0 1 1 1 1 1 1 1 1 669830000 371010000 298820000 722 2379 687 3953;3954;3955 4784;4785;4786 4786 3 AGGDAEPRPAEPPAWAGGAR Unmodified 1931.9238 0.92382195 2489 Q96HS1;Q96HS1-2 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 37.139 36.893 3 6.711E-23 9116 20211116_3431_TMUAki_TMT10x_P_F4 155.49 140.4 835230 1269000 6126.6 1762800 495660 453380 467460 602990 732320 591570 1129900 777650 1185900 59756 1743900 474250 546000 483830 605190 747520 578230 1077600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 835230 1269000 6126.6 1762800 495660 453380 467460 602990 732320 591570 1129900 777650 1185900 59756 1743900 474250 546000 483830 605190 747520 578230 1077600 2 2 1 2 2 2 2 2 2 2 2 71372000 0 71372000 723 2489 688 3956;3957;3958;3959 4787;4788;4789;4790;4791 4788 5 AGGEAGVTLGQPHLSR Acetyl (Protein N-term) 1590.8114 0.81141795 993 P41091;Q2VIR3;Q2VIR3-2 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 1 0 0 0 By MS/MS By MS/MS 3.25 1.64 2 1 1 2 2 39.837 39.93 2 1.1901E-107 9818 20211116_3445_TMUAki_TMT10x_S_F6 231.17 219.45 409790 655390 713.06 962600 389770 360640 320330 604540 744090 488670 727140 381520 612700 29101 951310 371690 410010 341670 598880 737840 482040 701970 3 3 1 3 3 3 3 3 3 3 3 24948 63741 0 80126 97147 78781 50310 37861 46146 38935 52326 23223 59538 2327.6 80564 91923 79420 53352 40592 47347 37982 50286 1 1 0 1 1 1 1 1 1 1 1 384840 591650 713.06 882470 292620 281860 270020 566680 697940 449740 674820 358290 553160 26774 870740 279760 330590 288320 558290 690490 444060 651690 2 2 1 2 2 2 2 2 2 2 2 92849000 11122000 81727000 724 993 689 3960;3961;3962;3963 4792;4793;4794;4795 4795 4 AGGEESQFEMDI Oxidation (M) 1327.5238 0.52381129 1643 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 yes yes 0 0 1 0 By MS/MS 1 0 1 1 56.811 56.51 2 0.0037869 18747 20211116_3439_TMUAki_TMT10x_S_F1 73.573 63.159 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 725 1643 690 3964 4796 4796 2210 1 AGGFLMK Oxidation (M) 738.37345 0.37344606 473 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 1 0 By MS/MS By MS/MS 8 0 2 1 1 43.996 44.069 2 0.044904 11691 20211116_3436_TMUAki_TMT10x_P_F8 79.439 48.435 5650800 9091800 0 8999400 8889800 9535400 6979700 6842400 6766800 6266500 7541900 5261300 8483300 500890 9195500 8475100 9620400 7173100 7075500 6920900 6143900 7251400 2 2 0 2 2 2 2 2 2 2 2 3524600 5486700 0 5525100 6781700 7460900 4635700 4330700 4207400 3850200 4551800 3281700 5119900 330360 5662700 6448100 7411000 4801200 4546700 4311300 3780100 4380300 1 1 0 1 1 1 1 1 1 1 1 2126200 3605100 0 3474400 2108100 2074400 2344000 2511700 2559400 2416200 2990100 1979700 3363400 170520 3532700 2027000 2209500 2371900 2528800 2609600 2363700 2871100 1 1 0 1 1 1 1 1 1 1 1 510610000 336490000 174120000 726 473 691 3965;3966 4797 4797 364 1 AGGGAAEQEELHYIPIR Unmodified 1809.901 0.90096124 2275 Q8TD19 NEK9 Serine/threonine-protein kinase Nek9 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 46.255 46.082 3 0.0041741 14416 20211116_3430_TMUAki_TMT10x_P_F3 57.788 47.795 3176700 5000100 30209 5896900 5352100 5899700 3578300 4533400 5175600 4221600 4809700 2958100 4669000 321990 5952500 5089100 5979400 3771900 4668900 5182400 4135900 4651100 2 2 2 2 2 2 2 2 2 2 2 1709300 2541800 2443.8 3008400 3913400 4648000 2486200 2570800 2875100 2260100 2506300 1591500 2373500 174860 3060600 3716700 4587200 2608600 2709400 2894900 2220100 2429200 1 1 1 1 1 1 1 1 1 1 1 1467500 2458300 27765 2888500 1438700 1251700 1092100 1962600 2300400 1961500 2303400 1366600 2295500 147140 2891900 1372400 1392100 1163300 1959500 2287500 1915700 2221900 1 1 1 1 1 1 1 1 1 1 1 171540000 105900000 65642000 727 2275 692 3967;3968;3969 4798;4799;4800 4798 3 AGGIETIANEFSDR Unmodified 1478.7001 0.70013617 2345 Q92598;Q92598-2;Q92598-3 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 0 By MS/MS By MS/MS 3 1.41 4 4 4 4 4 10 10 62.916 62.753 2;3 5.5709E-61 22284 20211116_3441_TMUAki_TMT10x_S_F3 312.82 284.65 146260000 238380000 339360 235920000 159170000 195830000 145390000 160570000 153510000 157770000 175810000 136170000 222420000 10196000 240250000 152210000 201180000 148440000 164950000 156600000 154200000 168910000 27 27 9 27 27 27 27 27 27 27 27 65942000 105100000 84852 106300000 76484000 125850000 75127000 71591000 69684000 72849000 78175000 61393000 98075000 4913500 108650000 73257000 125780000 76107000 75564000 71431000 71097000 75150000 13 13 4 13 13 13 13 13 13 13 13 80317000 133280000 254510 129620000 82688000 69982000 70258000 88976000 83823000 84924000 97636000 74780000 124350000 5282800 131600000 78950000 75399000 72336000 89385000 85172000 83108000 93758000 14 14 5 14 14 14 14 14 14 14 14 29427000000 15449000000 13978000000 728 2345 693 3970;3971;3972;3973;3974;3975;3976;3977;3978;3979;3980;3981;3982;3983;3984;3985;3986;3987;3988;3989 4801;4802;4803;4804;4805;4806;4807;4808;4809;4810;4811;4812;4813;4814;4815;4816;4817;4818;4819;4820;4821;4822;4823;4824;4825;4826;4827;4828;4829 4823 29 AGGIETIANEYSDR Unmodified 1494.6951 0.69505079 916 P34932;P34932-2 HSPA4 Heat shock 70 kDa protein 4 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 4 4 4 4 8 8 51.473 51.36 2;3 2.0493E-60 16121 20211116_3429_TMUAki_TMT10x_P_F2 304.57 277.32 63874000 108330000 127600 114140000 101680000 111550000 74162000 92425000 88096000 81023000 89122000 59462000 101100000 4378500 115990000 96706000 113370000 77096000 94595000 89050000 79601000 85941000 21 21 4 21 21 21 21 21 21 21 21 36711000 59798000 50767 64631000 70362000 88837000 50838000 51787000 50184000 46030000 49403000 34175000 55816000 2738700 65955000 66925000 88176000 52568000 54351000 51055000 45192000 47681000 12 12 1 12 12 12 12 12 12 12 12 27164000 48528000 76832 49509000 31313000 22709000 23324000 40638000 37912000 34993000 39719000 25287000 45285000 1639800 50037000 29780000 25190000 24528000 40244000 37995000 34409000 38260000 9 9 3 9 9 9 9 9 9 9 9 9902200000 6259200000 3642900000 729 916 694 3990;3991;3992;3993;3994;3995;3996;3997;3998;3999;4000;4001;4002;4003;4004;4005 4830;4831;4832;4833;4834;4835;4836;4837;4838;4839;4840;4841;4842;4843;4844;4845;4846;4847;4848;4849;4850 4836 21 AGGPATPLSPTR Unmodified 1123.5986 0.59857163 1505 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 0 By MS/MS 5 0 1 1 32.488 32.652 2 3.6524E-07 6581 20211116_3444_TMUAki_TMT10x_S_F5 131.52 82.722 105260 159640 0 181770 111690 76211 83394 91851 112510 89894 131730 97985 149040 6450.5 182290 106220 84502 86971 92539 113870 87876 126480 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 105260 159640 0 181770 111690 76211 83394 91851 112510 89894 131730 97985 149040 6450.5 182290 106220 84502 86971 92539 113870 87876 126480 1 1 0 1 1 1 1 1 1 1 1 6508100 0 6508100 730 1505 695 4006 4851 4851 1 AGGPHLEYFVR Unmodified 1244.6302 0.63020611 529 P07101;P07101-3;P07101-4;P07101-2;P07101-6;P07101-5 TH Tyrosine 3-monooxygenase yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 42.403 42.714 3 1.9092E-08 10824 20211116_3445_TMUAki_TMT10x_S_F6 146.71 127.47 2150300 3444600 48043 3942800 3905900 4275200 2591000 3255900 3067900 2683900 3058500 2002500 3216100 247640 3992100 3715000 4311900 2711600 3344700 3099800 2644800 2950700 4 4 4 4 4 4 4 4 4 4 4 1368100 2082300 25909 2415600 3117100 3636300 1942400 2003300 1886500 1688700 1838100 1274000 1944200 162070 2459000 2960900 3592400 2029900 2109800 1919900 1662200 1774600 2 2 2 2 2 2 2 2 2 2 2 782240 1362300 22135 1527200 788730 638970 648600 1252600 1181400 995220 1220400 728510 1271800 85573 1533100 754090 719520 681730 1234900 1179900 982590 1176000 2 2 2 2 2 2 2 2 2 2 2 428730000 258480000 170250000 731 529 696 4007;4008;4009;4010 4852;4853;4854;4855 4854 4 AGGPTTPLSPTR Unmodified 1153.6091 0.60913632 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 29.983 30.034 2 1.3545E-11 8132 20211116_3433_TMUAki_TMT10x_P_F5 165.58 126.57 6144100 9982000 45195 11022000 18236000 16249000 8825900 10573000 11948000 8488600 9650600 5721000 9318200 710370 11249000 17251000 16104000 9541200 10974000 11937000 8376300 9380700 3 3 1 3 3 3 3 3 3 3 3 6032400 9797900 45195 10810000 18129000 16170000 8700000 10459000 11807000 8379400 9479800 5617100 9146200 703910 11037000 17148000 16014000 9414000 10860000 11793000 8269400 9216800 2 2 1 2 2 2 2 2 2 2 2 111670 184170 0 211720 107310 79306 125900 114740 141680 109180 170790 103950 171950 6459.2 212060 103180 89755 127220 114700 144480 106860 163860 1 1 0 1 1 1 1 1 1 1 1 512840000 485780000 27058000 732 748 697 4011;4012;4013 4856;4857;4858 4856 3 AGGSASAMLQPLLDNQVGFK Oxidation (M) 2019.0095 0.0095254139 745 P20618 PSMB1 Proteasome subunit beta type-1 yes yes 0 0 1 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 68.037 68.214 3 7.0569E-13 22783 20211116_3435_TMUAki_TMT10x_P_F7 126.25 115.14 9292500 16781000 288720 14314000 10135000 17172000 11381000 10961000 11856000 11458000 12319000 8654400 15650000 1051300 14819000 9767100 17178000 11494000 11473000 12057000 11170000 11869000 3 3 3 3 3 3 3 3 3 3 3 6272600 11156000 284920 9529200 6511900 13026000 7477100 7219400 8114600 7732200 8351400 5842600 10404000 788930 9888600 6285500 12924000 7553600 7648600 8235700 7530500 8049000 2 2 2 2 2 2 2 2 2 2 2 3019900 5625000 3803.1 4784600 3623400 4146200 3904400 3741700 3741700 3725500 3967700 2811800 5245500 262370 4930800 3481600 4254100 3940700 3824200 3821600 3639200 3820500 1 1 1 1 1 1 1 1 1 1 1 2036500000 1526600000 509940000 733 745 698 4014;4015;4016 4859;4860;4861 4859 854 3 AGGSASAMLQPLLDNQVGFK Unmodified 2003.0146 0.014610792 745 P20618 PSMB1 Proteasome subunit beta type-1 yes yes 0 0 0 0 By MS/MS 8 0 1 1 85.164 85.163 3 0.064742 28479 20211116_3436_TMUAki_TMT10x_P_F8 36.207 12.166 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 734 745 698 4017 4862 4862 1 AGGVFTPGAAFSK Unmodified 1208.619 0.61897272 2230 Q8NBX0 SCCPDH Saccharopine dehydrogenase-like oxidoreductase yes yes 0 0 0 0 By MS/MS 2 0 1 1 58.064 57.838 2 4.8415E-09 17550 20211116_3440_TMUAki_TMT10x_S_F2 132.25 95.916 1999700 3646600 0 3891200 2021300 2189600 1616100 3156000 3345800 2646500 3091000 1861300 3403600 86562 3927000 1922700 2357300 1714000 3144800 3319100 2605700 2989700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1999700 3646600 0 3891200 2021300 2189600 1616100 3156000 3345800 2646500 3091000 1861300 3403600 86562 3927000 1922700 2357300 1714000 3144800 3319100 2605700 2989700 1 1 0 1 1 1 1 1 1 1 1 284210000 0 284210000 735 2230 699 4018 4863 4863 1 AGHCAVAINTR Unmodified 1168.5771 0.57712468 1160 P51610;P51610-2;P51610-4;P51610-3 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 0 0 By MS/MS 5 0 1 1 26.963 26.889 3 0.090124 5474 20211116_3433_TMUAki_TMT10x_P_F5 30.563 15.191 427260 650690 0 551030 418390 622520 432880 330980 325990 332540 507920 397800 606790 33083 570250 401390 623220 435020 351280 342770 324710 484340 1 1 0 1 1 1 1 1 1 1 1 427260 650690 0 551030 418390 622520 432880 330980 325990 332540 507920 397800 606790 33083 570250 401390 623220 435020 351280 342770 324710 484340 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6997400 6997400 0 736 1160 700 4019 4864 4864 1 AGHFDKEIVPVLVSTR Unmodified 1766.9679 0.9679186 2706 Q9BWD1;Q9BWD1-2 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 52.439 52.739 4 8.6627E-15 16943 20211116_3446_TMUAki_TMT10x_S_F7 141.86 127.07 6037300 10978000 92663 8581600 11781000 16063000 8337800 16939000 13070000 12667000 10994000 5621500 10235000 383990 9035800 11211000 15922000 8784000 17051000 13016000 12548000 10670000 4 4 1 4 4 4 4 4 4 4 4 3988900 7204800 92663 5656200 8613600 12819000 6058100 10137000 7931900 7584200 6520500 3714700 6717100 268330 5986800 8200500 12557000 6336600 10365000 7937300 7512300 6333800 2 2 1 2 2 2 2 2 2 2 2 2048400 3773600 0 2925400 3167700 3243400 2279700 6802300 5138500 5083300 4473900 1906700 3518000 115660 3049000 3010500 3364500 2447300 6685100 5078800 5035400 4336300 2 2 0 2 2 2 2 2 2 2 2 2781300000 1562200000 1219100000 737 2706 701 4020;4021;4022;4023 4865;4866;4867;4868 4867 4 AGHFDKEIVPVLVSTRK Unmodified 1895.0629 0.062881613 2706 Q9BWD1;Q9BWD1-2 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes no 0 0 0 2 By matching By MS/MS 1.5 0.5 1 1 1 1 49.575 49.511 5 1.0353E-07 14143 20211116_3440_TMUAki_TMT10x_S_F2 113.47 99.443 1332800 2480500 2231.5 2276900 1827200 1552900 1402000 3867000 3552100 2942000 2744100 1241000 2313800 119500 2326400 1741400 1678700 1510900 3787200 3490900 2911400 2672200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1332800 2480500 2231.5 2276900 1827200 1552900 1402000 3867000 3552100 2942000 2744100 1241000 2313800 119500 2326400 1741400 1678700 1510900 3787200 3490900 2911400 2672200 1 1 1 1 1 1 1 1 1 1 1 439910000 192760000 247150000 738 2706 702 4024;4025 4869 4869 1 AGHNVIALVGGATAR Unmodified 1405.779 0.77899561 3257 Q9Y2Z4 YARS2 Tyrosine--tRNA ligase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 2 4 3 3 42.094 42.113 2;3 1.7807E-09 11036 20211116_3440_TMUAki_TMT10x_S_F2 132.59 92.155 1913500 2321300 0 2315100 3183200 2710300 1879600 2275700 2122300 1669900 2733000 1781400 2166000 140140 2368100 3017100 2726900 1982200 2317600 2170100 1655900 2617500 2 2 0 2 2 2 2 2 2 2 2 1699500 1975000 0 1877000 2997200 2546900 1746200 1982700 1816400 1433000 2425100 1582100 1842500 126970 1931800 2840300 2540600 1838800 2027800 1866400 1422200 2320500 1 1 0 1 1 1 1 1 1 1 1 213980 346300 0 438040 185950 163450 133460 293090 305900 236900 307930 199200 323480 13164 436290 176710 186360 143460 289770 303730 233680 296990 1 1 0 1 1 1 1 1 1 1 1 204030000 178010000 26023000 739 3257 703 4026;4027;4028;4029;4030;4031 4870;4871;4872;4873;4874;4875 4874 6 AGHQFGVTWR Unmodified 1157.573 0.57302558 2452 Q96EY7 PTCD3 Pentatricopeptide repeat domain-containing protein 3, mitochondrial yes yes 0 0 0 0 By matching By MS/MS 1.33 0.471 2 1 1 2 36.56 36.573 3 0.00019096 8491 20211116_3440_TMUAki_TMT10x_S_F2 106.16 88.176 648130 1028900 2447.8 1134500 550590 505900 581160 573850 579560 523690 807180 603470 960500 52869 1140500 528730 555680 587840 578520 597750 513530 771610 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 648130 1028900 2447.8 1134500 550590 505900 581160 573850 579560 523690 807180 603470 960500 52869 1140500 528730 555680 587840 578520 597750 513530 771610 2 2 1 2 2 2 2 2 2 2 2 69264000 28432000 40833000 740 2452 704 4032;4033;4034 4876;4877 4877 2 AGHYAASIIIR Unmodified 1170.6509 0.65094155 1241 P55263;P55263-3;P55263-4;P55263-2 ADK Adenosine kinase yes no 0 0 0 0 By MS/MS By MS/MS 4.33 2.94 2 2 1 1 3 5 4 38.21 38.259 2;3 2.3688E-08 9398 20211116_3428_TMUAki_TMT10x_P_F1 143.4 126 7008600 11769000 172500 12302000 11901000 11069000 8509300 11456000 13182000 8374000 11116000 6527000 10983000 810350 12494000 11337000 11361000 8953300 11536000 13133000 8305400 10788000 11 11 11 11 11 11 11 11 11 11 11 3800000 6064600 111190 6483700 8428500 8510000 5294900 5317500 6191600 4267000 5683700 3539000 5660500 483500 6615200 8009600 8472700 5562500 5536200 6241600 4210600 5498600 7 7 7 7 7 7 7 7 7 7 7 3208700 5704000 61303 5818600 3472900 2559100 3214300 6138500 6990700 4107000 5432700 2988000 5322800 326850 5879100 3327200 2888500 3390900 5999700 6891300 4094800 5288900 4 4 4 4 4 4 4 4 4 4 4 678350000 419570000 258780000 741 1241 705 4035;4036;4037;4038;4039;4040;4041;4042;4043 4878;4879;4880;4881;4882;4883;4884;4885;4886;4887;4888 4878 11 AGHYLELGAEIAR Unmodified 1398.7256 0.72556306 268 O60476 MAN1A2 Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB yes yes 0 0 0 0 By MS/MS 5 0 1 1 49.173 49.353 3 0.00074046 13263 20211116_3444_TMUAki_TMT10x_S_F5 68.034 38.227 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 742 268 706 4044 4889 4889 1 AGIATHFVDSEK Unmodified 1273.6303 0.63026569 1984 Q6NVY1;Q6NVY1-2 HIBCH 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 42.574 42.7 3 0.0019627 10617 20211116_3444_TMUAki_TMT10x_S_F5 68.676 47.118 2189100 3313200 55880 4475500 1675800 1337600 1834400 1729500 1825400 1833000 2619700 2038600 3095900 226380 4436800 1614200 1565000 1852100 1741800 1885600 1785900 2502600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2189100 3313200 55880 4475500 1675800 1337600 1834400 1729500 1825400 1833000 2619700 2038600 3095900 226380 4436800 1614200 1565000 1852100 1741800 1885600 1785900 2502600 1 1 1 1 1 1 1 1 1 1 1 43386000 0 43386000 743 1984 707 4045;4046 4890;4891 4891 2 AGIEGPLLASDVGR Unmodified 1353.7252 0.72522871 719 P18583;P18583-3;P18583-5;P18583-6;P18583-10;P18583-4;P18583-7;P18583-9;P18583-2 SON Protein SON yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 55.873 55.754 2 1.465E-29 16739 20211116_3431_TMUAki_TMT10x_P_F4 212.09 168.85 11435000 18760000 84645 19113000 15246000 20887000 13433000 16614000 15777000 15298000 15819000 10647000 17507000 978670 19500000 14571000 21072000 13793000 17068000 15949000 14995000 15259000 5 5 2 5 5 5 5 5 5 5 5 6860200 11900000 84645 11461000 11083000 16762000 9819700 10285000 9772400 9395000 9659300 6387900 11102000 670070 11803000 10598000 16604000 10025000 10757000 9939800 9212300 9321500 3 3 2 3 3 3 3 3 3 3 3 4574400 6860700 0 7652100 4162700 4124500 3613000 6329300 6004200 5903500 6160100 4258700 6404700 308600 7697800 3973400 4468900 3767600 6311200 6009100 5783200 5937600 2 2 0 2 2 2 2 2 2 2 2 1685800000 926170000 759650000 744 719 708 4047;4048;4049;4050 4892;4893;4894;4895;4896 4893 5 AGIEGPLLASDVGRDR Unmodified 1624.8533 0.85328277 719 P18583;P18583-3;P18583-5;P18583-6;P18583-10;P18583-4;P18583-7;P18583-9;P18583-2 SON Protein SON yes no 0 0 0 1 By MS/MS 3 0 1 1 47.077 47.052 3 0.060806 14814 20211116_3430_TMUAki_TMT10x_P_F3 37.583 21.956 2481800 3423000 43890 4938500 4683800 4671500 2658800 2583500 2189300 2046200 3232400 2311100 3199700 277500 4927000 4442800 4728600 2788300 2716000 2284800 2020600 3085900 1 1 1 1 1 1 1 1 1 1 1 2481800 3423000 43890 4938500 4683800 4671500 2658800 2583500 2189300 2046200 3232400 2311100 3199700 277500 4927000 4442800 4728600 2788300 2716000 2284800 2020600 3085900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 85567000 85567000 0 745 719 709 4051 4897 4897 1 AGIFQPHVR Unmodified 1023.5614 0.56139826 354 O75694;O75694-2 NUP155 Nuclear pore complex protein Nup155 yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 3 1 35.087 35.07 3 7.7178E-06 9549 20211116_3429_TMUAki_TMT10x_P_F2 143.12 85.84 1316900 2013000 59298 2491100 2074800 1911100 1448800 1576000 1560000 1397700 1905800 1226600 1880200 174420 2498900 1977200 1975100 1505700 1613900 1594500 1372400 1827800 4 4 3 4 4 4 4 4 4 4 4 599100 878940 19588 1076300 1436600 1245900 809390 690870 696550 606010 836160 557970 820890 79655 1086600 1362900 1246300 850300 727900 718510 595360 802290 2 2 2 2 2 2 2 2 2 2 2 717770 1134100 39710 1414800 638160 665220 639390 885120 863490 791730 1069700 668610 1059300 94769 1412300 614290 728860 655430 886040 875960 777090 1025500 2 2 1 2 2 2 2 2 2 2 2 254280000 152540000 101740000 746 354 710 4052;4053;4054;4055 4898;4899;4900;4901;4902;4903 4901 6 AGIIASAR Unmodified 757.44464 0.44463717 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 32.717 32.772 2 0.0021457 6427 20211116_3444_TMUAki_TMT10x_S_F5 113.14 64.79 951520 1687300 0 1537000 1954100 1857500 1227500 1160400 1211100 995560 1299800 885830 1573900 76828 1583400 1854400 1856900 1282600 1210100 1235900 979110 1251100 2 2 0 2 2 2 2 2 2 2 2 748710 1338300 0 1221000 1762500 1732000 1050100 968220 1025400 843030 1038100 697030 1248300 63828 1261500 1671300 1715800 1101700 1019200 1044700 828500 1001000 1 1 0 1 1 1 1 1 1 1 1 202800 349010 0 315990 191570 125500 177390 192220 185610 152540 261730 188800 325540 13001 321840 183090 141100 180930 190880 191170 150610 250120 1 1 0 1 1 1 1 1 1 1 1 66565000 55030000 11535000 747 653 711 4056;4057 4904;4905 4905 2 AGIICQLNAR Unmodified 1114.5917 0.59171211 911 P33991 MCM4 DNA replication licensing factor MCM4 yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 45.47 45.442 2 0.0017838 12439 20211116_3440_TMUAki_TMT10x_S_F2 84.476 60.14 936100 1608200 24345 1863700 865830 739390 629260 1385500 1329400 1138800 1429300 871790 1501600 99314 1866500 825730 837120 672330 1368700 1325300 1122400 1375700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 936100 1608200 24345 1863700 865830 739390 629260 1385500 1329400 1138800 1429300 871790 1501600 99314 1866500 825730 837120 672330 1368700 1325300 1122400 1375700 1 1 1 1 1 1 1 1 1 1 1 55522000 0 55522000 748 911 712 4058;4059;4060 4906;4907;4908 4908 3 AGIISTVEVLK Unmodified 1128.6754 0.67542497 1246 P55786;P55786-2 NPEPPS Puromycin-sensitive aminopeptidase yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 66.991 67.464 2 1.6512E-14 23001 20211116_3446_TMUAki_TMT10x_S_F7 190.88 139.03 21411000 33860000 584810 34843000 25456000 31652000 24916000 19817000 17707000 21421000 26238000 19940000 31599000 2376800 35428000 24430000 32176000 25078000 20794000 18632000 20855000 25047000 2 2 2 2 2 2 2 2 2 2 2 10503000 16594000 417820 15292000 13263000 21010000 13416000 9605900 8240000 10435000 12314000 9782100 15479000 1298800 15778000 12746000 20794000 13440000 10367000 8753900 10157000 11753000 1 1 1 1 1 1 1 1 1 1 1 10909000 17266000 166990 19551000 12193000 10643000 11499000 10211000 9467400 10986000 13924000 10158000 16120000 1078000 19650000 11684000 11382000 11638000 10427000 9878500 10698000 13294000 1 1 1 1 1 1 1 1 1 1 1 1691100000 839820000 851270000 749 1246 713 4061;4062 4909;4910 4910 2 AGILTTLNAR Unmodified 1028.5978 0.59784335 913 P33993;P33993-3 MCM7 DNA replication licensing factor MCM7 yes no 0 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 50.283 50.087 2 1.5971E-06 14327 20211116_3440_TMUAki_TMT10x_S_F2 154.12 129.12 6852500 11417000 49035 12285000 13392000 13629000 7275400 11165000 11679000 9088300 11155000 6380700 10657000 705400 12491000 12690000 13746000 7835900 11414000 11670000 8961700 10777000 2 2 2 2 2 2 2 2 2 2 2 4311300 6570200 40175 7093700 10992000 11804000 5574400 6615700 7203600 5462600 6735400 4014500 6132700 488450 7270200 10406000 11618000 5988100 6953700 7240500 5382600 6511900 1 1 1 1 1 1 1 1 1 1 1 2541200 4847300 8859.4 5191200 2399500 1824800 1701000 4549200 4475900 3625700 4420000 2366200 4524300 216950 5221300 2283700 2127800 1847900 4460200 4430000 3579100 4265500 1 1 1 1 1 1 1 1 1 1 1 728150000 508840000 219320000 750 913 714 4063;4064;4065;4066 4911;4912;4913;4914 4913 4 AGIPVYAWK Unmodified 1003.5491 0.54910224 786 P23526;P23526-2 AHCY Adenosylhomocysteinase yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 62.436 62.129 2 9.1509E-05 21056 20211116_3430_TMUAki_TMT10x_P_F3 140.53 93.445 50201000 85614000 1068700 95482000 68332000 60867000 57138000 35893000 33156000 36873000 63419000 46749000 79924000 5255300 96193000 65293000 63581000 57800000 37783000 35854000 35971000 60241000 6 6 4 6 6 6 6 6 6 6 6 17632000 27865000 429680 30872000 37746000 37795000 30670000 11419000 10823000 11833000 21368000 16420000 26013000 2087500 31386000 36037000 37483000 30866000 12953000 12253000 11540000 20286000 2 2 1 2 2 2 2 2 2 2 2 32569000 57748000 639050 64610000 30586000 23072000 26468000 24474000 22334000 25040000 42051000 30329000 53911000 3167900 64807000 29256000 26098000 26935000 24830000 23601000 24432000 39955000 4 4 3 4 4 4 4 4 4 4 4 2720300000 1553100000 1167300000 751 786 715 4067;4068;4069;4070 4915;4916;4917;4918;4919;4920 4916 6 AGISFIIK Unmodified 847.51674 0.51673948 1428 P78347;P78347-2;P78347-4;P78347-3;P78347-5 GTF2I General transcription factor II-I yes no 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 64.604 64.152 2 0.0030556 20111 20211116_3440_TMUAki_TMT10x_S_F2 100.15 41.572 4338400 7033300 0 7054500 3527800 5117300 4796900 4866700 5434600 4942800 5292700 4039300 6562900 319140 7166300 3412700 5327000 4819100 4963100 5495800 4824300 5110100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4338400 7033300 0 7054500 3527800 5117300 4796900 4866700 5434600 4942800 5292700 4039300 6562900 319140 7166300 3412700 5327000 4819100 4963100 5495800 4824300 5110100 1 1 0 1 1 1 1 1 1 1 1 197760000 0 197760000 752 1428 716 4071;4072 4921;4922 4921 2 AGITTIEAVK Acetyl (Protein N-term) 1043.5863 0.58627561 526;527 P06753-2;P06753-3;P06753-5;P06753-4;P06753-6 TPM3 Tropomyosin alpha-3 chain no no 1 0 0 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 63.813 63.59 2 4.2909E-06 21185 20211116_3429_TMUAki_TMT10x_P_F2 83.005 67.923 85985000 140460000 411690 143850000 100730000 128180000 99144000 91909000 94005000 95343000 107530000 80056000 131080000 6776700 146280000 96510000 130730000 100490000 95380000 96339000 92975000 103320000 10 10 6 10 10 10 10 10 10 10 10 46834000 74696000 88236 76461000 61135000 88174000 57880000 47253000 48530000 50582000 57282000 43601000 69706000 3232200 78054000 58482000 88184000 58591000 50209000 50091000 49264000 54987000 4 4 1 4 4 4 4 4 4 4 4 39150000 65767000 323450 67392000 39597000 40005000 41264000 44656000 45475000 44760000 50252000 36455000 61374000 3544400 68227000 38028000 42548000 41899000 45172000 46249000 43711000 48329000 6 6 5 6 6 6 6 6 6 6 6 7824700000 3923000000 3901700000 753 526;527 717 4073;4074;4075;4076;4077;4078;4079;4080 4923;4924;4925;4926;4927;4928;4929;4930;4931;4932;4933 4925 11 AGITTIEAVKR Acetyl (Protein N-term) 1199.6874 0.68738664 526;527 P06753-2;P06753-3;P06753-5;P06753-4;P06753-6 TPM3 Tropomyosin alpha-3 chain no no 1 0 0 1 By MS/MS By MS/MS 4.22 1.31 1 2 2 2 2 5 4 51.214 51.233 2 1.159E-12 15245 20211116_3442_TMUAki_TMT10x_S_F4 105.94 81.781 100310000 175420000 354130 192980000 166970000 191300000 109130000 160900000 168030000 145280000 149840000 93394000 163750000 7394300 195610000 158610000 194300000 115550000 164660000 167720000 142530000 145110000 11 11 4 11 11 11 11 11 11 11 11 57545000 95667000 324980 106340000 125040000 151120000 78595000 87560000 91295000 77069000 81629000 53579000 89308000 4313500 108400000 118720000 149760000 82544000 91919000 91978000 75701000 79043000 7 7 3 7 7 7 7 7 7 7 7 42765000 79750000 29148 86644000 41932000 40180000 30538000 73336000 76733000 68209000 68211000 39815000 74441000 3080800 87210000 39890000 44543000 33001000 72737000 75739000 66828000 66065000 4 4 1 4 4 4 4 4 4 4 4 17406000000 9759800000 7646400000 754 526;527 718 4081;4082;4083;4084;4085;4086;4087;4088;4089 4934;4935;4936;4937;4938;4939;4940;4941;4942;4943;4944 4942 11 AGIVTSLQAR Unmodified 1014.5822 0.58219329 1114 P49736 MCM2 DNA replication licensing factor MCM2 yes yes 0 0 0 0 By MS/MS By MS/MS 5 3.29 2 1 2 2 3 41.879 41.922 2 3.8018E-06 10227 20211116_3447_TMUAki_TMT10x_S_F8 145.17 65.266 6498100 10528000 8474 11779000 12637000 10460000 6822700 9136600 9308600 7494100 9785700 6050400 9828400 621400 11909000 11971000 10708000 7301600 9307100 9378100 7386800 9425100 4 4 2 4 4 4 4 4 4 4 4 3311500 5021100 8474 6035500 9456900 8044800 4325200 4559000 4791400 3836900 4947400 3083400 4689000 368510 6115600 8939200 7993300 4670000 4789600 4859600 3777100 4767700 2 2 2 2 2 2 2 2 2 2 2 3186600 5506800 0 5743800 3180100 2415400 2497500 4577600 4517200 3657200 4838300 2967000 5139400 252890 5793100 3031400 2714500 2631600 4517500 4518500 3609700 4657400 2 2 0 2 2 2 2 2 2 2 2 337140000 219440000 117700000 755 1114 719 4090;4091;4092;4093;4094 4945;4946;4947;4948;4949 4949 5 AGKFPSLLTHNENMVAK Oxidation (M) 1871.9564 0.95636763 1381 P62906 RPL10A 60S ribosomal protein L10a yes yes 0 0 1 1 By MS/MS By MS/MS 3.36 2.47 4 3 2 2 1 2 7 7 45.847 45.847 3;4;5 8.2145E-11 13869 20211116_3429_TMUAki_TMT10x_P_F2 127.3 109.81 59740000 107050000 1001800 123530000 104010000 124380000 60770000 118000000 121660000 96749000 98452000 55629000 99947000 6238200 124870000 98684000 126510000 65787000 119660000 120280000 95366000 95691000 23 23 14 23 23 23 23 23 23 23 23 30691000 51740000 327840 60629000 84983000 102480000 44661000 60085000 59890000 45228000 46636000 28577000 48312000 3350900 61849000 80475000 100870000 47881000 62785000 59791000 44784000 45398000 11 11 5 11 11 11 11 11 11 11 11 29048000 55305000 673920 62901000 19024000 21893000 16109000 57918000 61770000 51521000 51816000 27052000 51634000 2887300 63019000 18208000 25643000 17906000 56878000 60489000 50582000 50293000 12 12 9 12 12 12 12 12 12 12 12 12126000000 9130000000 2995900000 756 1381 720 4095;4096;4097;4098;4099;4100;4101;4102;4103;4104;4105;4106;4107;4108 4950;4951;4952;4953;4954;4955;4956;4957;4958;4959;4960;4961;4962;4963;4964;4965;4966;4967;4968;4969;4970;4971;4972;4973 4956 1851 24 AGKFPSLLTHNENMVAK Unmodified 1855.9615 0.96145301 1381 P62906 RPL10A 60S ribosomal protein L10a yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.756 2 3 2 4 3 51.179 50.978 3;4 8.5342E-36 15937 20211116_3429_TMUAki_TMT10x_P_F2 206.95 184.94 32089000 53438000 1035400 71030000 44827000 41232000 32480000 20631000 17772000 22680000 37719000 29886000 49929000 3782800 70774000 42733000 43379000 33136000 22078000 19431000 22066000 35769000 7 7 5 7 7 7 7 7 7 7 7 16092000 24921000 524840 34163000 33779000 31884000 22809000 10444000 9420300 11132000 18128000 14987000 23289000 2050000 34165000 32144000 32140000 23295000 11721000 10478000 10844000 17218000 4 4 2 4 4 4 4 4 4 4 4 15997000 28517000 510600 36868000 11047000 9347600 9670900 10188000 8351300 11548000 19592000 14898000 26640000 1732800 36610000 10589000 11239000 9840800 10357000 8952600 11222000 18551000 3 3 3 3 3 3 3 3 3 3 3 5929400000 4029000000 1900300000 757 1381 720 4109;4110;4111;4112;4113;4114;4115 4974;4975;4976;4977;4978;4979;4980 4975 7 AGKLDPHLVLDQLR Unmodified 1573.894 0.89402537 934;935 P35579;P35579-2;P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH9;MYH10 Myosin-9;Myosin-10 no no 0 0 0 1 By MS/MS By MS/MS 8 0 4 2 2 57.15 57.207 3;4 1.653E-06 16539 20211116_3447_TMUAki_TMT10x_S_F8 114.63 83.629 21605000 36770000 253350 35642000 34384000 44705000 25383000 46489000 37235000 35940000 34469000 20118000 34306000 2194200 36576000 32757000 45023000 26585000 46861000 37264000 35535000 33337000 6 6 5 6 6 6 6 6 6 6 6 10614000 17552000 157710 16762000 20282000 32501000 15464000 22232000 18347000 17016000 16402000 9884300 16375000 1162400 17391000 19336000 31908000 16027000 22966000 18470000 16833000 15883000 3 3 3 3 3 3 3 3 3 3 3 10991000 19218000 95642 18881000 14102000 12204000 9919700 24257000 18888000 18924000 18067000 10234000 17931000 1031800 19186000 13421000 13115000 10558000 23895000 18793000 18702000 17454000 3 3 2 3 3 3 3 3 3 3 3 3568100000 2042200000 1525900000 758 934;935 721 4116;4117;4118;4119 4981;4982;4983;4984;4985;4986 4985 6 AGKPVICATQMLESMIK 2 Oxidation (M) 1907.9519 0.95187588 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 2 1 By MS/MS By MS/MS 4.22 3.39 4 1 4 4 5 58.168 58.108 3;4 1.4954E-05 19295 20211116_3439_TMUAki_TMT10x_S_F1 89.358 76.378 95414000 162650000 1169400 148930000 115540000 193940000 105940000 187230000 215740000 183210000 155190000 88846000 151710000 8908200 153580000 110590000 194640000 111360000 190580000 212520000 179100000 151580000 23 23 15 23 23 23 23 23 23 23 23 47814000 78172000 399730 73330000 66850000 127720000 58612000 86505000 101310000 87380000 75426000 44520000 72924000 4302500 75964000 63896000 125830000 61205000 90058000 100280000 85304000 73562000 10 10 5 10 10 10 10 10 10 10 10 47601000 84474000 769700 75603000 48690000 66219000 47330000 100720000 114430000 95834000 79762000 44326000 78790000 4605700 77614000 46694000 68814000 50157000 100520000 112250000 93798000 78017000 13 13 10 13 13 13 13 13 13 13 13 13534000000 6725400000 6809000000 759 670;671 722 4120;4121;4122;4123;4124;4125;4126;4127;4128 4987;4988;4989;4990;4991;4992;4993;4994;4995;4996;4997;4998;4999;5000;5001;5002;5003;5004;5005;5006;5007;5008;5009 4997 734;735 23 AGKPVICATQMLESMIK Oxidation (M) 1891.957 0.95696126 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 1 1 By MS/MS By MS/MS 1.91 0.583 5 15 3 14 9 66.384 66.218 3;4 5.6648E-11 20933 20211116_3440_TMUAki_TMT10x_S_F2 131.56 112.96 204600000 310210000 849640 319950000 195730000 249120000 221580000 111920000 93406000 138180000 205470000 190500000 289490000 16420000 324660000 188300000 255080000 219440000 121500000 104610000 133870000 194740000 35 35 19 35 35 35 35 35 35 35 35 122830000 177950000 203640 187690000 116910000 173600000 135110000 63062000 52116000 79751000 117850000 114360000 166090000 9500400 190580000 112520000 175230000 133530000 70195000 58984000 77202000 111650000 22 22 10 22 22 22 22 22 22 22 22 81770000 132250000 646010 132260000 78818000 75528000 86467000 48853000 41290000 58432000 87613000 76138000 123410000 6919400 134080000 75779000 79843000 85909000 51304000 45626000 56673000 83083000 13 13 9 13 13 13 13 13 13 13 13 27027000000 15030000000 11996000000 760 670;671 722 4129;4130;4131;4132;4133;4134;4135;4136;4137;4138;4139;4140;4141;4142;4143;4144;4145;4146;4147;4148;4149;4150;4151 5010;5011;5012;5013;5014;5015;5016;5017;5018;5019;5020;5021;5022;5023;5024;5025;5026;5027;5028;5029;5030;5031;5032;5033;5034;5035;5036;5037;5038;5039;5040;5041;5042;5043;5044 5036 734;735 35 AGKPVICATQMLESMIK Unmodified 1875.962 0.96204664 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 1 By MS/MS By MS/MS 3.33 0.816 2 2 5 4 5 78.146 78.108 3;4 2.414E-29 28435 20211116_3441_TMUAki_TMT10x_S_F3 188.49 169.66 258550000 375130000 2414000 519920000 189820000 145410000 267300000 37806000 28647000 57471000 208420000 240750000 350570000 21649000 514580000 184030000 168820000 259700000 44458000 45966000 55319000 195490000 13 13 9 13 13 13 13 13 13 13 13 89485000 124240000 868250 167440000 63201000 65890000 92176000 17821000 14212000 22777000 70718000 83325000 116090000 7737300 166250000 61374000 72308000 89569000 20693000 19875000 22041000 66470000 7 7 5 7 7 7 7 7 7 7 7 169070000 250890000 1545800 352480000 126620000 79521000 175130000 19986000 14434000 34693000 137700000 157420000 234480000 13912000 348330000 122660000 96510000 170130000 23765000 26090000 33277000 129020000 6 6 4 6 6 6 6 6 6 6 6 31194000000 15198000000 15996000000 761 670;671 722 4152;4153;4154;4155;4156;4157;4158;4159;4160 5045;5046;5047;5048;5049;5050;5051;5052;5053;5054;5055;5056;5057;5058 5054 14 AGKPYQLQIYPNER Unmodified 1675.8682 0.86820455 2101 Q86TI2;Q86TI2-2 DPP9 Dipeptidyl peptidase 9 yes no 0 0 0 1 By MS/MS 1 0 1 1 45.658 45.658 3 0.0004139 12260 20211116_3428_TMUAki_TMT10x_P_F1 71.031 55.141 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 762 2101 723 4161 5059 5059 1 AGKYEQAIQCYTEAISLCPTEK Unmodified 2559.1985 0.19852475 386 O94826 TOMM70A Mitochondrial import receptor subunit TOM70 yes yes 0 0 0 1 By MS/MS 7 0 1 1 73.265 73.436 4 3.7001E-10 25539 20211116_3446_TMUAki_TMT10x_S_F7 103.95 88.692 1944400 3821500 72348 3233700 3043600 2899400 2811000 3272200 3108000 3102700 2917700 1811000 3563600 244030 3335500 2916900 2982700 2872700 3303100 3142100 3037300 2820500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1944400 3821500 72348 3233700 3043600 2899400 2811000 3272200 3108000 3102700 2917700 1811000 3563600 244030 3335500 2916900 2982700 2872700 3303100 3142100 3037300 2820500 1 1 1 1 1 1 1 1 1 1 1 489910000 0 489910000 763 386 724 4162 5060 5060 1 AGLELLSDQGYR Acetyl (Protein N-term) 1362.6779 0.67794416 2888 Q9NPD3 EXOSC4 Exosome complex component RRP41 yes yes 1 0 0 0 By MS/MS By MS/MS 2 0.894 2 1 2 3 2 75.215 75.102 2 9.1067E-12 25745 20211116_3429_TMUAki_TMT10x_P_F2 131.5 118.24 6777000 10986000 221610 10217000 7282300 12442000 8094000 7883700 7187900 7799100 9115700 6311700 10248000 772950 10510000 7016300 12435000 8139600 8243100 7420600 7620500 8733900 4 4 3 4 4 4 4 4 4 4 4 5686000 8810400 158310 8108800 5650800 11069000 6568800 6567600 6068600 6562400 7466500 5295400 8218400 615940 8366200 5450700 10993000 6599500 6904600 6245200 6409400 7159300 3 3 2 3 3 3 3 3 3 3 3 1091000 2175600 63300 2107900 1631500 1372600 1525200 1316000 1119400 1236800 1649300 1016300 2029800 157010 2144200 1565500 1442400 1540100 1338500 1175300 1211100 1574600 1 1 1 1 1 1 1 1 1 1 1 1117200000 806130000 311100000 764 2888 725 4163;4164;4165;4166;4167 5061;5062;5063;5064;5065 5062 5 AGLEVLFASAAPAITCR Acetyl (Protein N-term) 1787.924 0.92400487 2337 Q92530 PSMF1 Proteasome inhibitor PI31 subunit yes yes 1 0 0 0 By MS/MS By MS/MS 6.73 1.29 1 1 2 3 4 5 6 83.511 83.521 2;3 2.9588E-60 29246 20211116_3435_TMUAki_TMT10x_P_F7 208.72 189.4 2718200 4469400 36435 4193800 2817200 4848300 3388600 3165900 3420900 3471100 3473100 2531100 4169400 236430 4307700 2717100 4860900 3408300 3312900 3480700 3377400 3348700 9 9 3 9 9 9 9 9 9 9 9 1914800 3114700 20370 2914300 1928000 3959900 2404500 2208200 2432600 2442300 2512900 1783000 2905600 156450 3002800 1861300 3930300 2415000 2340600 2476400 2375600 2421600 5 5 2 5 5 5 5 5 5 5 5 803360 1354700 16065 1279600 889200 888360 984070 957630 988330 1028800 960190 748110 1263800 79985 1304800 855780 930690 993360 972290 1004300 1001800 927130 4 4 1 4 4 4 4 4 4 4 4 1491900000 761590000 730330000 765 2337 726 4168;4169;4170;4171;4172;4173;4174;4175;4176;4177;4178 5066;5067;5068;5069;5070;5071;5072;5073;5074;5075;5076 5068 11 AGLGHPAAFGR Acetyl (Protein N-term) 1094.5621 0.56212655 382 O94760 DDAH1 N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 yes yes 1 0 0 0 By MS/MS By MS/MS 4.4 1.36 1 1 2 1 3 2 35.311 35.348 2 2.9493E-19 7760 20211116_3444_TMUAki_TMT10x_S_F5 145.34 137.99 1355000 2332300 16016 2644400 3167200 2966700 1807600 1464500 2028300 1456100 2173200 1261600 2177400 122300 2680500 3001700 2968600 1911500 1564600 2058900 1422500 2091900 4 4 3 4 4 4 4 4 4 4 4 1113900 1923700 4323.5 2207300 2927100 2734600 1559500 1124500 1663000 1165200 1802100 1037000 1796100 91424 2239700 2770500 2717100 1656600 1225800 1692200 1136300 1734100 3 3 2 3 3 3 3 3 3 3 3 241130 408610 11693 437140 240170 232120 248100 340030 365290 290940 371110 224600 381380 30875 440870 231190 251540 254880 338800 366700 286170 357820 1 1 1 1 1 1 1 1 1 1 1 677910000 380660000 297250000 766 382 727 4179;4180;4181;4182;4183 5077;5078;5079;5080;5081;5082 5082 6 AGLGLGGRPPPQPPREER Unmodified 1883.0126 0.012577377 2035 Q6ZSJ8 C1orf122 Uncharacterized protein C1orf122 yes yes 0 0 0 2 By MS/MS 1 0 1 1 32.092 32.122 4 9.9061E-12 8785 20211116_3439_TMUAki_TMT10x_S_F1 126.63 116.35 282590 466100 1518.3 535910 264720 263000 289720 388350 427970 331240 444080 263080 435180 18644 537700 254160 287580 296850 386810 429910 325860 427890 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 282590 466100 1518.3 535910 264720 263000 289720 388350 427970 331240 444080 263080 435180 18644 537700 254160 287580 296850 386810 429910 325860 427890 2 2 1 2 2 2 2 2 2 2 2 22455000 0 22455000 767 2035 728 4184 5083;5084 5083 2 AGLGSGLSLSGLVHPELSR Unmodified 1849.0058 0.005760665 1115 P49748;P49748-2;P49748-3 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS 3 0 1 1 65.774 65.316 3 9.2331E-05 23401 20211116_3441_TMUAki_TMT10x_S_F3 69.612 46.733 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 768 1115 729 4185 5085 5085 1 AGLLEPEVFHLNPAK Unmodified 1633.8828 0.88279198 789 P23786 CPT2 Carnitine O-palmitoyltransferase 2, mitochondrial yes yes 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 63.995 64.334 3 3.2782E-05 21136 20211116_3435_TMUAki_TMT10x_P_F7 94.728 78.504 10626000 17715000 173990 16203000 13750000 24147000 14354000 16348000 15037000 15485000 14796000 9895600 16525000 1086900 16755000 13210000 23934000 14549000 16989000 15259000 15159000 14280000 2 2 2 2 2 2 2 2 2 2 2 10626000 17715000 173990 16203000 13750000 24147000 14354000 16348000 15037000 15485000 14796000 9895600 16525000 1086900 16755000 13210000 23934000 14549000 16989000 15259000 15159000 14280000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 961760000 961760000 0 769 789 730 4186;4187 5086;5087 5087 2 AGLLGQPR Unmodified 810.47119 0.47118627 3319 Q9Y5J7 TIMM9 Mitochondrial import inner membrane translocase subunit Tim9 yes yes 0 0 0 0 By MS/MS By matching 7.67 0.471 1 2 2 1 34.175 34.607 2 0.023749 9147 20211116_3435_TMUAki_TMT10x_P_F7 68.485 29.666 230700 341730 0 327360 362410 394020 247020 215280 217550 222610 264140 214750 318820 15001 335970 344210 393270 255680 228120 224260 217110 253360 1 1 0 1 1 1 1 1 1 1 1 230700 341730 0 327360 362410 394020 247020 215280 217550 222610 264140 214750 318820 15001 335970 344210 393270 255680 228120 224260 217110 253360 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 48094000 25601000 22493000 770 3319 731 4188;4189;4190 5088 5088 1 AGLLQPPVR Unmodified 949.5709 0.57090032 2152 Q8IX12;Q8IX12-2 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 45.037 45.013 2 0.013008 11634 20211116_3447_TMUAki_TMT10x_S_F8 64.757 47.2 7640200 13125000 51094 14447000 10957000 11066000 8097100 10687000 11267000 10145000 11278000 7114100 12252000 717590 14594000 10436000 11473000 8460900 10869000 11324000 9930000 10879000 4 4 2 4 4 4 4 4 4 4 4 2607000 4366100 0 4836300 6297400 6060900 3788200 3560700 3626800 3283700 3989100 2427400 4075800 264220 4919000 5974900 6042700 3968700 3738200 3709500 3218400 3836900 1 1 0 1 1 1 1 1 1 1 1 5033200 8758500 51094 9610300 4659200 5005300 4308900 7126100 7640500 6860800 7288600 4686700 8175800 453380 9675100 4461400 5430700 4492200 7130300 7614600 6711600 7042000 3 3 2 3 3 3 3 3 3 3 3 304650000 206110000 98546000 771 2152 732 4191;4192;4193;4194 5089;5090;5091;5092 5092 4 AGLLQVYIHTQK Unmodified 1369.7718 0.77178497 2383 Q92979 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 56.824 56.519 3 8.1349E-05 19788 20211116_3441_TMUAki_TMT10x_S_F3 95.094 76.958 24414000 40425000 504570 45302000 32672000 37368000 31706000 20992000 18880000 22044000 28780000 22735000 37739000 2610000 45753000 31334000 38190000 31814000 22201000 20120000 21486000 27456000 4 4 4 4 4 4 4 4 4 4 4 14351000 24188000 231920 27606000 21205000 27692000 20685000 10935000 9952300 11579000 15804000 13364000 22583000 1501900 27922000 20334000 27829000 20676000 11983000 10802000 11282000 15065000 2 2 2 2 2 2 2 2 2 2 2 10063000 16237000 272650 17696000 11467000 9676300 11021000 10057000 8927600 10465000 12975000 9371400 15156000 1108000 17830000 11000000 10361000 11138000 10218000 9317500 10204000 12392000 2 2 2 2 2 2 2 2 2 2 2 911580000 477910000 433670000 772 2383 733 4195;4196;4197 5093;5094;5095;5096;5097 5096 5 AGLNSLEAVK Acetyl (Protein N-term) 1042.5659 0.56587452 1413 P67936 TPM4 Tropomyosin alpha-4 chain yes yes 1 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 63.132 62.77 2 2.5308E-05 22336 20211116_3441_TMUAki_TMT10x_S_F3 71.223 56.141 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 773 1413 734 4198;4199 5098;5099 5099 2 AGLNSLEAVKR Acetyl (Protein N-term) 1198.667 0.66698555 1413 P67936 TPM4 Tropomyosin alpha-4 chain yes yes 1 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 49.824 50.001 2 1.7462E-15 14639 20211116_3433_TMUAki_TMT10x_P_F5 128.36 109.7 + 7040000 12430000 105800 13494000 14026000 15386000 9219500 10953000 12579000 9817000 11277000 6555600 11603000 770500 13720000 13334000 15458000 9707100 11326000 12603000 9634600 10918000 3 3 2 3 3 3 3 3 3 3 3 4652700 8312100 105800 8755800 11929000 13575000 7270300 7171200 8189100 6521200 7237700 4332900 7757800 586250 8973100 11328000 13388000 7646600 7594900 8257100 6395700 7011400 2 2 2 2 2 2 2 2 2 2 2 2387300 4118000 0 4738500 2096900 1811400 1949300 3782100 4389500 3295800 4038800 2222700 3844800 184240 4746400 2006200 2070200 2060500 3731300 4346300 3238900 3907000 1 1 0 1 1 1 1 1 1 1 1 1167400000 850610000 316750000 774 1413 735 4200;4201;4202;4203 5100;5101;5102;5103 5101 4 AGLQFPVGR Unmodified 943.52395 0.52395013 592;690;2391;2134;591 Q6FI13;P0C0S8;Q99878;Q9BTM1;Q16777;Q96KK5;P20671;Q9BTM1-2;Q71UI9-5;P16104;Q8IUE6;Q93077;Q7L7L0;P04908;Q71UI9;P0C0S5;Q71UI9-2 HIST2H2AA3;HIST1H2AG;HIST1H2AJ;H2AFJ;HIST2H2AC;HIST1H2AH;HIST1H2AD;H2AFV;H2AFX;HIST2H2AB;HIST1H2AC;HIST3H2A;HIST1H2AB;H2AFZ Histone H2A type 2-A;Histone H2A type 1;Histone H2A type 1-J;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-H;Histone H2A type 1-D;Histone H2A.V;Histone H2AX;Histone H2A type 2-B;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A.Z no no 0 0 0 0 By MS/MS By MS/MS 2.87 2.07 11 13 5 2 2 2 2 2 25 14 40.941 40.902 2 8.695E-11 14947 20211116_3429_TMUAki_TMT10x_P_F2 227.94 152.75 1422000000 2261600000 15225000 2837300000 3002500000 2817700000 1572100000 2813200000 2899100000 2253500000 2449400000 1323900000 2112400000 120770000 2853500000 2842100000 2871600000 1710500000 2843100000 2875300000 2224000000 2376800000 61 61 21 61 61 61 61 60 60 61 60 720240000 1117100000 2353200 1357200000 2380800000 2216900000 1058600000 1342500000 1454300000 1073000000 1185400000 670450000 1043300000 62506000 1380500000 2248300000 2185700000 1155100000 1401000000 1452700000 1059100000 1151900000 36 36 13 36 36 36 36 36 36 36 36 701790000 1144400000 12871000 1480000000 621680000 600800000 513530000 1470700000 1444700000 1180500000 1264000000 653490000 1069100000 58267000 1473000000 593840000 685840000 555380000 1442100000 1422600000 1164900000 1224900000 25 25 8 25 25 25 25 24 24 25 24 461370000000 272020000000 189350000000 775 592;690;2134;2391;591 736 4204;4205;4206;4207;4208;4209;4210;4211;4212;4213;4214;4215;4216;4217;4218;4219;4220;4221;4222;4223;4224;4225;4226;4227;4228;4229;4230;4231;4232;4233;4234;4235;4236;4237;4238;4239;4240;4241;4242 5104;5105;5106;5107;5108;5109;5110;5111;5112;5113;5114;5115;5116;5117;5118;5119;5120;5121;5122;5123;5124;5125;5126;5127;5128;5129;5130;5131;5132;5133;5134;5135;5136;5137;5138;5139;5140;5141;5142;5143;5144;5145;5146;5147;5148;5149;5150;5151;5152;5153;5154;5155;5156;5157;5158;5159;5160;5161;5162;5163;5164;5165;5166;5167;5168;5169 5129 66 AGLSDLELRR Acetyl (Protein N-term) 1170.6357 0.63568542 2233 Q8NC56 LEMD2 LEM domain-containing protein 2 yes yes 1 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 47.58 47.5 2 2.4461E-06 13267 20211116_3440_TMUAki_TMT10x_S_F2 107.69 83.507 1595300 2790500 28305 3078100 1449900 1166800 1332500 2117000 1986200 1737000 2316300 1485600 2604900 156610 3091200 1389000 1327900 1378000 2093100 2003700 1712100 2224300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1595300 2790500 28305 3078100 1449900 1166800 1332500 2117000 1986200 1737000 2316300 1485600 2604900 156610 3091200 1389000 1327900 1378000 2093100 2003700 1712100 2224300 1 1 1 1 1 1 1 1 1 1 1 101410000 0 101410000 776 2233 737 4243;4244 5170;5171 5171 2 AGLSQSLFER Unmodified 1106.572 0.57202253 2376 Q92900;Q92900-2 UPF1 Regulator of nonsense transcripts 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 50.33 50.451 2 2.8796E-06 13994 20211116_3445_TMUAki_TMT10x_S_F6 148.91 105.15 3563700 5632500 3656.4 6548800 2657100 2955700 2569100 5075600 5641400 4750300 5086100 3318200 5259200 286160 6562400 2545800 3280300 2705700 5043800 5585000 4652800 4923600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3563700 5632500 3656.4 6548800 2657100 2955700 2569100 5075600 5641400 4750300 5086100 3318200 5259200 286160 6562400 2545800 3280300 2705700 5043800 5585000 4652800 4923600 1 1 1 1 1 1 1 1 1 1 1 321710000 177630000 144090000 777 2376 738 4245;4246;4247 5172;5173 5173 2 AGLTFNHDPPLSQNQR Unmodified 1793.8809 0.8808945 2077 Q7Z3U7;Q7Z3U7-2;Q7Z3U7-6;Q7Z3U7-5 MON2 Protein MON2 homolog yes no 0 0 0 0 By MS/MS 6 0 1 1 38.106 38.102 3 0.00040527 8704 20211116_3434_TMUAki_TMT10x_P_F6 71.354 41.023 244630 402800 0 512450 770780 685260 410720 341720 370320 331080 359970 227770 376260 27426 517620 729990 679720 434180 364450 378140 323790 347570 1 1 0 1 1 1 1 1 1 1 1 244630 402800 0 512450 770780 685260 410720 341720 370320 331080 359970 227770 376260 27426 517620 729990 679720 434180 364450 378140 323790 347570 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24439000 24439000 0 778 2077 739 4248 5174 5174 1 AGLTVRDPAVDR Acetyl (Protein N-term) 1310.6943 0.69426293 907 P33240;P33240-2 CSTF2 Cleavage stimulation factor subunit 2 yes no 1 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 38.093 37.982 2 6.0505E-12 10655 20211116_3429_TMUAki_TMT10x_P_F2 96.034 53.2 823160 1375800 26275 1605200 1846700 1675700 1150800 1331400 1452000 1066900 1432400 766640 1284600 107070 1622400 1754800 1695000 1213000 1363200 1463300 1052800 1382400 3 3 3 3 3 3 3 3 3 3 3 612630 979670 13594 1109200 1662900 1516800 969120 979680 1097700 774020 1009500 570520 914620 78170 1128500 1577800 1508000 1023300 1017000 1107900 764420 976530 2 2 2 2 2 2 2 2 2 2 2 210530 396160 12681 496030 183800 158850 181700 351740 354310 292840 422920 196120 370030 28898 493930 176950 186950 189760 346130 355330 288420 405850 1 1 1 1 1 1 1 1 1 1 1 305760000 259970000 45792000 779 907 740 4249;4250;4251 5175;5176;5177 5176 3 AGLVIGK Unmodified 656.42211 0.42211082 2408;2407;2380 Q92945;Q96AE4-2;Q96AE4 KHSRP;FUBP1 Far upstream element-binding protein 2;Far upstream element-binding protein 1 no no 0 0 0 0 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 45.256 45.48 2 0.0051535 13566 20211116_3435_TMUAki_TMT10x_P_F7 109.88 54.486 48228000 74599000 49868 74766000 70152000 81344000 57046000 60450000 61836000 52076000 64991000 44900000 69610000 3720200 76361000 66897000 81993000 58698000 62265000 62810000 51205000 62597000 6 6 1 6 6 6 6 6 6 6 6 31910000 48192000 49868 48694000 52600000 66263000 39856000 37827000 40525000 33422000 41876000 29708000 44970000 2530800 49903000 50089000 65781000 41115000 39763000 41246000 32823000 40355000 4 4 1 4 4 4 4 4 4 4 4 16317000 26407000 0 26073000 17552000 15081000 17190000 22623000 21310000 18654000 23115000 15192000 24640000 1189300 26458000 16808000 16211000 17583000 22502000 21563000 18382000 22242000 2 2 0 2 2 2 2 2 2 2 2 2956500000 2100000000 856560000 780 2380;2408;2407 741 4252;4253;4254;4255;4256;4257 5178;5179;5180;5181;5182;5183;5184 5180 7 AGLYGLPR Unmodified 845.47594 0.4759373 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 44.494 44.652 2 0.0017724 11365 20211116_3447_TMUAki_TMT10x_S_F8 117.7 56.738 16446000 26468000 19853 29358000 24928000 25133000 15646000 20196000 21151000 17700000 20631000 15312000 24708000 1362800 29683000 23661000 25754000 16526000 20709000 21258000 17389000 19918000 6 6 2 6 6 6 6 6 6 6 6 9311800 15115000 19365 16336000 19364000 20016000 10583000 11431000 11993000 9981500 11337000 8669700 14108000 841130 16634000 18342000 19971000 11238000 12012000 12116000 9808100 10957000 3 3 1 3 3 3 3 3 3 3 3 7134200 11353000 488.39 13022000 5563600 5117000 5062500 8765300 9158500 7718200 9294000 6642300 10600000 521630 13049000 5318900 5782500 5288100 8696500 9142800 7581100 8961400 3 3 1 3 3 3 3 3 3 3 3 2122900000 1145000000 977950000 781 1092 742 4258;4259;4260;4261;4262;4263 5185;5186;5187;5188;5189;5190 5190 6 AGMTHIVR Unmodified 883.46981 0.46980607 975 P39023 RPL3 60S ribosomal protein L3 yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 28.998 28.928 3 0.034253 6297 20211116_3433_TMUAki_TMT10x_P_F5 49.96 34.521 186340 289620 2145 253360 226510 284610 197000 120060 152850 148660 205190 173520 270110 18011 261500 216580 284320 200000 131230 159290 144010 196320 1 1 1 1 1 1 1 1 1 1 1 186340 289620 2145 253360 226510 284610 197000 120060 152850 148660 205190 173520 270110 18011 261500 216580 284320 200000 131230 159290 144010 196320 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7670400 7670400 0 782 975 743 4264;4265 5191;5192 5191 2 AGNAIHAILLYR Unmodified 1310.7459 0.74590457 1135 P50416;P50416-2 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 53.778 53.612 3 7.9615E-08 15754 20211116_3431_TMUAki_TMT10x_P_F4 106.67 92.898 3877600 6715900 10167 7152400 3717400 3546900 3828500 5058900 4715000 4816100 5199400 3610500 6268300 328710 7211900 3567800 3869800 3905100 5059900 4775100 4713700 5000700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3877600 6715900 10167 7152400 3717400 3546900 3828500 5058900 4715000 4816100 5199400 3610500 6268300 328710 7211900 3567800 3869800 3905100 5059900 4775100 4713700 5000700 2 2 2 2 2 2 2 2 2 2 2 733800000 0 733800000 783 1135 744 4266;4267;4268;4269 5193;5194;5195;5196 5194 4 AGNEKEEGETADTVGCCSLR Unmodified 2181.9267 0.92666 624 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.816 1 1 1 1 2 34.591 34.433 3 4.4325E-91 9274 20211116_3429_TMUAki_TMT10x_P_F2 319.19 301.37 2246800 3447400 3661.7 6249400 16222000 7434400 4073500 4153300 7377600 2291300 6188900 2091800 3227300 353230 6195200 15247000 7426900 4869400 4332600 7318700 2314500 6007000 3 3 2 3 3 3 3 3 3 3 3 1313200 1956100 0 3300800 15243000 6747600 3049400 2487600 4412800 1318100 3807400 1222500 1830300 271790 3323900 14307000 6565700 3773000 2709200 4408100 1335500 3691600 1 1 0 1 1 1 1 1 1 1 1 933610 1491300 3661.7 2948600 978210 686840 1024100 1665700 2964800 973140 2381500 869310 1397000 81440 2871300 939330 861210 1096400 1623500 2910500 978950 2315400 2 2 2 2 2 2 2 2 2 2 2 393350000 260540000 132810000 784 624 745 4270;4271;4272 5197;5198;5199 5197 3 AGNFYVPAEPK Unmodified 1191.5924 0.59242362 716 P18124 RPL7 60S ribosomal protein L7 yes yes 0 0 0 0 By MS/MS By MS/MS 5.6 0.49 2 3 3 2 50.58 50.724 2;3 5.836E-07 13722 20211116_3434_TMUAki_TMT10x_P_F6 138.08 109.34 12106000 20077000 93614 25797000 21068000 17667000 13706000 15051000 16317000 13291000 17878000 11273000 18755000 1210400 25791000 20021000 18441000 14369000 15383000 16541000 13054000 17198000 5 5 4 5 5 5 5 5 5 5 5 5031700 7959000 6828 10667000 14584000 12454000 8750700 5648900 6668200 5156900 7317400 4685000 7436700 551240 10718000 13837000 12424000 9116700 6072100 6897900 5056800 7038700 2 2 1 2 2 2 2 2 2 2 2 7074500 12118000 86786 15130000 6484400 5213600 4955700 9402500 9648900 8134500 10560000 6587700 11318000 659140 15074000 6184400 6017100 5252000 9310400 9643000 7996800 10159000 3 3 3 3 3 3 3 3 3 3 3 776500000 430310000 346190000 785 716 746 4273;4274;4275;4276;4277 5200;5201;5202;5203;5204;5205 5202 6 AGNLGGGVVTIER Unmodified 1241.6728 0.67279921 931 P35268 RPL22 60S ribosomal protein L22 yes yes 0 0 0 0 By MS/MS By MS/MS 4.71 1.22 3 3 4 3 1 6 8 43.902 44.02 2;3 1.9877E-29 11360 20211116_3445_TMUAki_TMT10x_S_F6 238.92 192.95 43531000 67426000 205370 83545000 73877000 63941000 43297000 51019000 56007000 44625000 58978000 40531000 62976000 3857700 83798000 70057000 66058000 45911000 52333000 56527000 43846000 56802000 17 17 5 17 17 17 17 17 17 17 17 21875000 32933000 96124 40392000 55285000 48468000 26140000 23965000 27480000 21532000 28582000 20367000 30758000 2121400 40800000 52267000 48328000 28081000 25530000 27936000 21130000 27538000 7 7 2 7 7 7 7 7 7 7 7 21656000 34493000 109250 43154000 18592000 15473000 17157000 27053000 28527000 23093000 30396000 20164000 32218000 1736200 42998000 17790000 17730000 17830000 26803000 28590000 22717000 29264000 10 10 3 10 10 10 10 10 10 10 10 10229000000 4550600000 5678500000 786 931 747 4278;4279;4280;4281;4282;4283;4284;4285;4286;4287;4288;4289;4290;4291 5206;5207;5208;5209;5210;5211;5212;5213;5214;5215;5216;5217;5218;5219;5220;5221;5222;5223;5224;5225 5223 20 AGNNMLLVGVHGPR Oxidation (M) 1449.7511 0.7510663 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 1 0 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 31.946 31.97 3 6.5556E-08 10246 20211116_3439_TMUAki_TMT10x_S_F1 121.21 97.458 7621800 12576000 109620 14472000 15605000 14999000 10151000 12341000 12150000 9720700 12371000 7096600 11742000 735300 14638000 14825000 15188000 10644000 12603000 12281000 9601700 11927000 7 7 6 7 7 7 7 7 7 7 7 4484300 7412700 43543 8657900 12474000 12235000 7183900 7611100 7500900 5810400 7420900 4174800 6921500 413690 8798000 11823000 12139000 7573300 7917900 7614200 5749000 7161100 3 3 2 3 3 3 3 3 3 3 3 3137600 5163100 66079 5813900 3130400 2764500 2967500 4729700 4648700 3910200 4950200 2921900 4820200 321610 5839600 3001500 3048600 3070600 4685100 4666400 3852700 4766000 4 4 4 4 4 4 4 4 4 4 4 1449200000 904280000 544970000 787 755 748 4292;4293;4294;4295;4296;4297 5226;5227;5228;5229;5230;5231;5232 5230 871 7 AGNNMLLVGVHGPR Unmodified 1433.7562 0.75615168 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 42.529 42.482 3 3.1033E-14 11117 20211116_3440_TMUAki_TMT10x_S_F2 152.38 133.92 3174800 5554400 64434 6296300 6678700 6634800 4345900 4572000 4707400 4143200 5032900 2956500 5185600 361550 6375900 6348400 6691800 4541400 4739800 4784700 4064200 4844900 5 5 3 5 5 5 5 5 5 5 5 2281300 3801200 27836 4444900 5790400 5747600 3475000 2985300 3279200 2890900 3518800 2124200 3549300 253440 4508600 5494900 5712900 3639900 3171800 3353100 2827300 3387000 3 3 1 3 3 3 3 3 3 3 3 893500 1753200 36597 1851400 888270 887160 870890 1586700 1428200 1252300 1514100 832210 1636300 108110 1867400 853490 978970 901540 1567900 1431600 1236800 1457900 2 2 2 2 2 2 2 2 2 2 2 1161700000 833320000 328360000 788 755 748 4298;4299;4300;4301;4302;4303 5233;5234;5235;5236;5237;5238 5237 6 AGNVIFR Unmodified 775.43407 0.43407249 1248 P55809 OXCT1 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial yes yes 0 0 0 0 By MS/MS 8 0 1 1 38.001 38.274 2 0.10366 9315 20211116_3436_TMUAki_TMT10x_P_F8 53.576 11.101 582390 806170 3423.2 920010 1049400 1001300 652190 560130 586680 554570 710620 542280 752660 58015 931740 996470 1005100 680290 591600 604110 541850 681680 1 1 1 1 1 1 1 1 1 1 1 582390 806170 3423.2 920010 1049400 1001300 652190 560130 586680 554570 710620 542280 752660 58015 931740 996470 1005100 680290 591600 604110 541850 681680 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22960000 22960000 0 789 1248 749 4304 5239 5239 1 AGPESDAQYQFTGIKK Unmodified 1738.8526 0.85261407 2501 Q96IX5 USMG5 Up-regulated during skeletal muscle growth protein 5 yes yes 0 0 0 1 By MS/MS By MS/MS 6 0 3 2 1 48.494 48.61 3;4 7.0922E-29 13241 20211116_3445_TMUAki_TMT10x_S_F6 185.33 160.01 6545000 10285000 21859 14463000 14314000 11924000 7268200 9577600 9773100 7371700 9605400 6093900 9612900 640330 14422000 13547000 12251000 7818400 9790200 9826900 7290500 9271200 3 3 1 3 3 3 3 3 3 3 3 4212200 6620100 21859 9185200 12819000 10713000 6142400 6069700 6375500 4790200 6139500 3921900 6186900 463710 9212000 12123000 10715000 6586800 6367300 6467400 4731000 5929900 2 2 1 2 2 2 2 2 2 2 2 2332800 3665200 0 5278200 1495300 1211100 1125800 3507900 3397600 2581600 3465900 2172000 3426000 176630 5209900 1424200 1536200 1231600 3423000 3359500 2559500 3341300 1 1 0 1 1 1 1 1 1 1 1 964030000 726900000 237130000 790 2501 750 4305;4306;4307 5240;5241;5242 5242 3 AGPGSEELTVTNAR Unmodified 1400.6896 0.68957148 2700 Q9BW19 KIFC1 Kinesin-like protein KIFC1 yes yes 0 0 0 0 By MS/MS 2 0 2 2 32.01 32.067 2;3 0.00054859 7112 20211116_3440_TMUAki_TMT10x_S_F2 77.64 51.042 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 791 2700 751 4308;4309 5243;5244 5244 2 AGPGVVR Unmodified 654.38131 0.38130863 1824 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 27.182 27.173 2 0.0067185 5660 20211116_3433_TMUAki_TMT10x_P_F5 102.14 46.088 638310 1086700 0 846990 794420 1182200 762400 544510 610680 586040 770490 594270 1013100 47475 886020 760430 1169300 770310 587040 633570 570650 738320 2 2 0 2 2 2 2 2 2 2 2 638310 1086700 0 846990 794420 1182200 762400 544510 610680 586040 770490 594270 1013100 47475 886020 760430 1169300 770310 587040 633570 570650 738320 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 52829000 52829000 0 792 1824 752 4310;4311;4312 5245;5246;5247 5246 3 AGPGVVRK Unmodified 782.47627 0.47627165 1824 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 28.329 28.282 3 0.00355 5357 20211116_3428_TMUAki_TMT10x_P_F1 92.822 78.158 916960 1446000 10265 1472000 1009000 1006700 814480 352640 498180 464660 827130 853840 1349400 85832 1492900 963110 1039500 826540 394900 532320 449190 787710 3 3 2 3 3 3 3 3 3 3 3 864840 1357000 10265 1384800 948410 964770 760540 322940 458290 431590 778160 805320 1266300 82438 1404500 905280 994330 771910 363990 490810 417040 740760 2 2 2 2 2 2 2 2 2 2 2 52119 89042 0 87132 60559 41894 53946 29694 39887 33064 48965 48520 83079 3394.4 88347 57832 45195 54630 30907 41515 32153 46953 1 1 0 1 1 1 1 1 1 1 1 45314000 36370000 8944200 793 1824 753 4313;4314;4315 5248;5249 5248 2 AGPIWDLR Unmodified 926.4974 0.49740102 271;272;211 O60506;O60506-2;O60506-3;O60506-4;O60506-5;O43390;O43390-2;O43390-3;O43390-4 SYNCRIP;HNRNPR Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R no no 0 0 0 0 By MS/MS By MS/MS 5.71 1.03 1 2 2 2 4 3 56.453 56.582 2 0.0017872 18491 20211116_3446_TMUAki_TMT10x_S_F7 107.59 62.512 39549000 62245000 130570 71387000 59002000 56046000 45183000 33250000 28012000 34305000 49625000 36822000 58115000 3349500 71951000 56213000 57530000 46022000 34989000 30015000 33461000 47203000 6 6 1 6 6 6 6 6 6 6 6 20733000 31436000 0 37027000 40382000 41957000 29606000 17060000 14398000 17226000 25187000 19303000 29354000 1814000 37453000 38437000 41879000 30123000 18606000 15696000 16817000 23963000 3 3 0 3 3 3 3 3 3 3 3 18816000 30808000 130570 34360000 18620000 14089000 15577000 16191000 13614000 17079000 24438000 17519000 28761000 1535500 34499000 17776000 15650000 15899000 16382000 14320000 16644000 23240000 3 3 1 3 3 3 3 3 3 3 3 4027900000 2552300000 1475500000 794 271;272;211 754 4316;4317;4318;4319;4320;4321;4322 5250;5251;5252;5253;5254;5255;5256;5257 5257 8 AGPLGPGPGDGCFTLPGHR Unmodified 1861.8894 0.8893507 68 O00192;O00192-2 ARVCF Armadillo repeat protein deleted in velo-cardio-facial syndrome yes no 0 0 0 0 By MS/MS 7 0 1 1 50.695 51.368 3 2.083E-07 15855 20211116_3435_TMUAki_TMT10x_P_F7 98.796 78.415 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 795 68 755 4323 5258 5258 1 AGPQPLALQLEQLLNPR Acetyl (Protein N-term) 1899.0578 0.057796236 3014 Q9NY61 AATF Protein AATF yes yes 1 0 0 0 By MS/MS 6.5 0.5 1 1 2 83.71 83.731 2 2.1295E-36 29786 20211116_3446_TMUAki_TMT10x_S_F7 168.94 146.25 212140 364940 0 319680 353990 286230 291710 254800 266620 299210 326810 197510 340360 18860 328820 337810 292950 298370 261980 274470 290390 313400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 212140 364940 0 319680 353990 286230 291710 254800 266620 299210 326810 197510 340360 18860 328820 337810 292950 298370 261980 274470 290390 313400 1 1 0 1 1 1 1 1 1 1 1 12932000 0 12932000 796 3014 756 4324;4325 5259 5259 1 AGQAFRK Acetyl (Protein N-term) 818.43989 0.43988615 1316 P61604 HSPE1 10 kDa heat shock protein, mitochondrial yes yes 1 0 0 1 By MS/MS 5 0 1 1 23.983 24.065 2 0.013118 4146 20211116_3444_TMUAki_TMT10x_S_F5 51.688 46.833 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 797 1316 757 4326 5260 5260 1 AGQAVDDFIEK Unmodified 1191.5772 0.57716749 1170 P52209;P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 By MS/MS By MS/MS 3.12 0.781 2 3 3 6 2 56.48 56.318 2;3 1.707E-14 18156 20211116_3429_TMUAki_TMT10x_P_F2 190.57 127.99 27744000 41781000 258630 58057000 73615000 63657000 37196000 43109000 51968000 35915000 45178000 25834000 39047000 3131700 58162000 69682000 64042000 40091000 44652000 51982000 35372000 43792000 8 8 6 8 8 8 8 8 8 8 8 19844000 29448000 220810 40313000 67341000 57752000 31089000 30549000 37124000 25842000 31875000 18478000 27519000 2490000 40619000 63670000 57147000 33617000 32292000 37317000 25432000 30911000 6 6 5 6 6 6 6 6 6 6 6 7900000 12333000 37821 17744000 6273600 5904700 6107100 12560000 14844000 10073000 13303000 7355800 11528000 641760 17542000 6011900 6895200 6473900 12360000 14665000 9940200 12881000 2 2 1 2 2 2 2 2 2 2 2 3233300000 2089600000 1143700000 798 1170 758 4327;4328;4329;4330;4331;4332;4333;4334 5261;5262;5263;5264;5265;5266;5267;5268;5269;5270 5261 10 AGQPLQLLDASWYLPK Unmodified 1798.9618 0.96177059 800 P25325;P25325-2 MPST 3-mercaptopyruvate sulfurtransferase yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 79.864 79.845 2;3 1.5808E-15 27709 20211116_3429_TMUAki_TMT10x_P_F2 143.79 118.13 4421900 7150400 24404 7198200 5873200 4377100 5862100 2514100 2476700 3292700 4819900 4117400 6672300 409670 7297800 5632700 4591300 5841900 2673500 2750900 3183700 4577000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4421900 7150400 24404 7198200 5873200 4377100 5862100 2514100 2476700 3292700 4819900 4117400 6672300 409670 7297800 5632700 4591300 5841900 2673500 2750900 3183700 4577000 1 1 1 1 1 1 1 1 1 1 1 1181600000 0 1181600000 799 800 759 4335;4336 5271;5272 5271 2 AGQQGLSVAFDLATHR Unmodified 1669.8536 0.85361712 762 P22033 MUT Methylmalonyl-CoA mutase, mitochondrial yes yes 0 0 0 0 By MS/MS 7 0 2 2 57.325 57.848 3 0.011859 19029 20211116_3446_TMUAki_TMT10x_S_F7 50.392 35.702 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 800 762 760 4337;4338 5273;5274 5274 2 AGQTTYSGVIDCFRK Unmodified 1701.8145 0.81445442 3141 Q9UJS0;Q9UJS0-2;O75746;O75746-2 SLC25A13;SLC25A12 Calcium-binding mitochondrial carrier protein Aralar2;Calcium-binding mitochondrial carrier protein Aralar1 yes no 0 0 0 1 By MS/MS By MS/MS 5.2 3.06 1 1 1 2 2 3 50.807 50.899 3 7.2167E-30 14523 20211116_3436_TMUAki_TMT10x_P_F8 205.28 178.66 22531000 37771000 186900 43631000 28756000 31649000 20776000 32365000 26509000 27744000 31764000 20979000 35266000 2024000 43918000 27376000 32997000 21669000 32732000 26904000 27286000 30479000 5 5 2 5 5 5 5 5 5 5 5 8466300 13855000 169740 15370000 18577000 22192000 12955000 12736000 11286000 11214000 12102000 7884100 12934000 982540 15675000 17680000 21975000 13383000 13381000 11583000 11014000 11649000 2 2 1 2 2 2 2 2 2 2 2 14065000 23916000 17162 28262000 10179000 9456800 7820800 19629000 15223000 16530000 19662000 13095000 22332000 1041400 28243000 9696300 11022000 8285400 19351000 15321000 16272000 18830000 3 3 1 3 3 3 3 3 3 3 3 2122000000 936290000 1185700000 801 3141 761 4339;4340;4341;4342;4343 5275;5276;5277;5278;5279 5275 5 AGQVFLEELGNHK Unmodified 1440.7361 0.73612775 581 P09543;P09543-2 CNP 2',3'-cyclic-nucleotide 3'-phosphodiesterase yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 57.748 57.909 3 6.9243E-07 16759 20211116_3444_TMUAki_TMT10x_S_F5 118.24 92.803 8221900 14171000 21594 15176000 10557000 13789000 9164400 10523000 10633000 10035000 11063000 7655300 13227000 709820 15391000 10088000 14060000 9414100 10849000 10768000 9820900 10659000 2 2 1 2 2 2 2 2 2 2 2 4384500 7306900 21594 7958100 6862400 9964800 5870200 5718600 5603900 5082200 5945000 4082600 6820500 418340 8102600 6556300 9932300 5998000 6009600 5724700 4989700 5724400 1 1 1 1 1 1 1 1 1 1 1 3837300 6864000 0 7218300 3695100 3824300 3294200 4804300 5029100 4953000 5118400 3572700 6406200 291480 7288100 3531400 4127300 3416100 4839700 5043500 4831200 4934700 1 1 0 1 1 1 1 1 1 1 1 673190000 408430000 264760000 802 581 762 4344;4345;4346;4347 5280;5281;5282;5283 5282 4 AGRLPACVVDCGTGYTK Acetyl (Protein N-term) 1865.8764 0.87640275 1296 P61158 ACTR3 Actin-related protein 3 yes yes 1 0 0 1 By MS/MS By MS/MS 6 0 3 2 1 52.433 52.544 2 2.9178E-36 14871 20211116_3445_TMUAki_TMT10x_S_F6 86.262 60.789 732160 1320300 0 1326600 897570 627670 467790 924090 976790 880660 929040 681590 1232000 47640 1342500 848830 689200 512730 923290 969740 861890 897680 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 732160 1320300 0 1326600 897570 627670 467790 924090 976790 880660 929040 681590 1232000 47640 1342500 848830 689200 512730 923290 969740 861890 897680 1 1 0 1 1 1 1 1 1 1 1 324320000 185380000 138930000 803 1296 763 4348;4349;4350 5284;5285 5285 2 AGRPQYDTK Unmodified 1034.5145 0.51450765 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 1 By MS/MS 5 0 1 1 27.558 27.486 3 0.00045722 5711 20211116_3433_TMUAki_TMT10x_P_F5 109.79 81.391 395850 613600 4822.3 487910 390680 647410 372100 261770 287300 285000 435650 368610 572090 37241 509010 374430 641040 375790 286300 301250 277390 415670 2 2 2 2 2 2 2 2 2 2 2 395850 613600 4822.3 487910 390680 647410 372100 261770 287300 285000 435650 368610 572090 37241 509010 374430 641040 375790 286300 301250 277390 415670 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8284800 8284800 0 804 352 764 4351 5286;5287 5286 2 AGRSEAVVEYVFSGSR Unmodified 1712.8482 0.84819739 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 51.623 52.214 3 0.0010167 16208 20211116_3435_TMUAki_TMT10x_P_F7 63.226 42.273 8283300 14708000 60427 12895000 10418000 13906000 9183500 16691000 15666000 13480000 13252000 7712500 13717000 716830 13298000 9958100 14167000 9580500 16734000 15568000 13298000 12858000 2 2 1 2 2 2 2 2 2 2 2 3437300 5821300 0 5309100 4725100 7957000 4345300 5416700 5216500 4462500 4805400 3200000 5430000 246880 5491900 4517500 7885700 4454500 5607000 5254200 4397600 4648300 1 1 0 1 1 1 1 1 1 1 1 4846000 8886200 60427 7585600 5692700 5948900 4838200 11274000 10450000 9017800 8446400 4512500 8286900 469940 7806000 5440600 6281000 5126000 11127000 10314000 8900300 8210000 1 1 1 1 1 1 1 1 1 1 1 757390000 318210000 439180000 805 2048 765 4352;4353 5288 5288 1 AGSRYEDFSNLGTTHLLR Unmodified 2036.0076 0.007551579 774 P22695 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 47.122 47.443 4 2.2241E-31 14806 20211116_3446_TMUAki_TMT10x_S_F7 192.55 165.74 6702100 11026000 156230 11964000 9239000 7931100 5754100 10048000 9160600 8244300 9633600 6241100 10292000 685450 12079000 8777300 8376000 6124300 10055000 9187000 8126100 9278600 5 5 3 5 5 5 5 5 5 5 5 1623700 2485600 51645 2858500 3115300 3839200 2039800 2391600 2146500 1981900 2304000 1512200 2320700 203640 2904500 2963200 3818100 2128600 2492400 2184600 1952500 2217700 1 1 1 1 1 1 1 1 1 1 1 5078400 8540800 104580 9105400 6123700 4091800 3714400 7656000 7014000 6262400 7329700 4728900 7971600 481810 9174200 5814100 4557800 3995800 7562500 7002400 6173600 7060900 4 4 2 4 4 4 4 4 4 4 4 1317800000 527330000 790460000 806 774 766 4354;4355;4356 5289;5290;5291;5292;5293 5290 5 AGSSESIAAFIQR Unmodified 1335.6783 0.67827852 1047 P46379;P46379-2;P46379-3;P46379-4;P46379-5 BAG6 Large proline-rich protein BAG6 yes no 0 0 0 0 By matching By MS/MS 6 0 3 1 2 55.416 55.505 2 6.2792E-18 16163 20211116_3445_TMUAki_TMT10x_S_F6 147.62 125.63 4800900 9249900 41028 9743100 5073200 4922100 4519400 6755200 6341200 6178000 7101400 4470400 8633000 440080 9832700 4853000 5352900 4669600 6758400 6398300 6057500 6826900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4800900 9249900 41028 9743100 5073200 4922100 4519400 6755200 6341200 6178000 7101400 4470400 8633000 440080 9832700 4853000 5352900 4669600 6758400 6398300 6057500 6826900 2 2 2 2 2 2 2 2 2 2 2 481100000 209870000 271230000 807 1047 767 4357;4358;4359 5294;5295;5296 5296 3 AGTFQAFEQFGQQLLAHGHYASPEIK Unmodified 2874.4089 0.40892695 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By matching By MS/MS 2 0 2 1 1 78.055 78.014 4 1.1693E-17 25675 20211116_3440_TMUAki_TMT10x_S_F2 133.95 119.54 4527300 8809000 0 9005100 5791700 6187300 6070100 5500100 5041100 5483700 6236000 4215200 8220500 371410 9130700 5558900 6461600 6110800 5626400 5215800 5356300 5978700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4527300 8809000 0 9005100 5791700 6187300 6070100 5500100 5041100 5483700 6236000 4215200 8220500 371410 9130700 5558900 6461600 6110800 5626400 5215800 5356300 5978700 1 1 0 1 1 1 1 1 1 1 1 4636600000 2422800000 2213800000 808 1663 768 4360;4361 5297 5297 1 AGTGLVAGEVVVDALPYFDQGYEAPGVR Acetyl (Protein N-term) 2891.4341 0.43413865 368 O75934 BCAS2 Pre-mRNA-splicing factor SPF27 yes yes 1 0 0 0 By MS/MS By MS/MS 3 0.816 1 1 1 1 2 83.433 83.423 3 1.8008E-18 30601 20211116_3441_TMUAki_TMT10x_S_F3 80.132 67.469 988780 1603900 15752 1610300 1223800 1368500 1265200 987730 1025900 1124900 1498500 920740 1496600 86497 1638700 1175200 1400500 1273800 1027600 1070900 1093000 1430900 6 6 3 6 6 6 6 6 6 6 6 239060 318150 0 284390 204080 516270 240700 215420 252720 250850 404720 222570 296740 17715 295980 196490 504880 242610 235260 261970 243530 385710 1 1 0 1 1 1 1 1 1 1 1 749720 1285700 15752 1325900 1019700 852260 1024500 772310 773130 874070 1093800 698170 1199900 68782 1342700 978730 895640 1031200 792310 808900 849470 1045200 5 5 3 5 5 5 5 5 5 5 5 234350000 175320000 59031000 809 368 769 4362;4363;4364 5298;5299;5300;5301;5302;5303 5299 6 AGTGVDNVDLEAATR Unmodified 1487.7216 0.72159989 201 O43175 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.866 3 2 3 4 4 43.699 43.613 2;3 1.5579E-72 13195 20211116_3430_TMUAki_TMT10x_P_F3 331.31 291.43 4668200 7488300 174300 9220900 11926000 11905000 6631100 9392000 11166000 7396000 9460900 4347600 6993900 613270 9324600 11310000 11906000 7143500 9616200 11101000 7305500 9179400 6 6 4 6 6 6 6 6 6 6 6 2963500 4388600 174300 5460200 9961900 10032000 4753900 5361600 6527500 4710400 5305700 2760600 4099100 506150 5563000 9431600 9832900 5149300 5667500 6519700 4627300 5156100 4 4 4 4 4 4 4 4 4 4 4 1704800 3099700 0 3760600 1964400 1872700 1877200 4030300 4638700 2685600 4155200 1587000 2894800 107120 3761600 1878900 2072700 1994200 3948600 4581100 2678300 4023300 2 2 0 2 2 2 2 2 2 2 2 1095300000 836330000 258970000 810 201 770 4365;4366;4367;4368;4369;4370;4371;4372 5304;5305;5306;5307;5308;5309;5310;5311 5305 8 AGTGVDNVDLEAATRK Unmodified 1615.8166 0.81656291 201 O43175 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 1 By MS/MS By MS/MS 4.22 1.31 1 2 2 2 2 5 4 42.822 42.818 3 3.4693E-47 10675 20211116_3444_TMUAki_TMT10x_S_F5 252.05 227.11 12850000 19464000 226880 28166000 38199000 24173000 17117000 13324000 20151000 11831000 21535000 11966000 18195000 1631800 28060000 36111000 24628000 18559000 14049000 20417000 11616000 20731000 7 7 7 7 7 7 7 7 7 7 7 8006700 11801000 133100 17432000 32791000 20534000 11844000 7665400 12193000 7200700 13131000 7456000 11033000 1135000 17433000 30923000 20438000 13120000 8429200 12422000 7051700 12638000 4 4 4 4 4 4 4 4 4 4 4 4843400 7662900 93783 10734000 5408500 3639100 5272800 5658200 7958900 4630100 8404200 4510400 7161800 496870 10627000 5188200 4190200 5438700 5620200 7995100 4564300 8093500 3 3 3 3 3 3 3 3 3 3 3 2732800000 1908100000 824640000 811 201 771 4373;4374;4375;4376;4377;4378;4379;4380;4381 5312;5313;5314;5315;5316;5317;5318;5319;5320 5319 9 AGTQIENIDEDFRDGLK Unmodified 1919.9225 0.92248455 235 O43707;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.957 1 2 2 1 3 3 60.642 60.507 3 5.1705E-51 21383 20211116_3441_TMUAki_TMT10x_S_F3 229.4 208.17 58952000 95496000 265080 104200000 72643000 98040000 66030000 58839000 60544000 61732000 73918000 54891000 89141000 5102100 105590000 69489000 99376000 67153000 61888000 62308000 60172000 70892000 8 8 3 8 8 8 8 8 8 8 8 41941000 66538000 184730 73434000 54806000 82935000 51244000 41071000 42398000 42924000 51595000 39051000 62113000 3637900 74570000 52460000 82962000 51891000 43927000 43846000 41846000 49487000 6 6 2 6 6 6 6 6 6 6 6 17011000 28958000 80354 30765000 17837000 15105000 14786000 17768000 18147000 18808000 22323000 15840000 27028000 1464200 31023000 17029000 16414000 15262000 17962000 18462000 18326000 21405000 2 2 1 2 2 2 2 2 2 2 2 4431600000 3195700000 1235900000 812 235 772 4382;4383;4384;4385;4386;4387 5321;5322;5323;5324;5325;5326;5327;5328;5329;5330 5327 10 AGTQIENIEEDFRDGLK Unmodified 1933.9381 0.93813461 644 P12814;P12814-2;P12814-3;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 1 By MS/MS By MS/MS 2.4 1.2 2 2 1 2 3 69.184 68.968 3 3.1859E-43 21671 20211116_3428_TMUAki_TMT10x_P_F1 229.61 197.73 23717000 40873000 294210 41512000 28623000 32835000 28484000 22139000 23455000 24146000 29313000 22085000 38141000 2309200 42174000 27459000 33745000 28744000 23109000 24289000 23500000 28096000 4 4 4 4 4 4 4 4 4 4 4 10218000 17080000 38486 18194000 11929000 19182000 13349000 9124800 10025000 10106000 12329000 9514600 15941000 906990 18497000 11476000 19254000 13363000 9814400 10426000 9829800 11822000 1 1 1 1 1 1 1 1 1 1 1 13498000 23793000 255720 23318000 16694000 13653000 15136000 13014000 13430000 14040000 16983000 12570000 22200000 1402200 23677000 15983000 14491000 15381000 13295000 13863000 13670000 16273000 3 3 3 3 3 3 3 3 3 3 3 4353900000 2479700000 1874200000 813 644 773 4388;4389;4390;4391;4392 5331;5332;5333;5334 5331 4 AGTVVLDDVELR Acetyl (Protein N-term) 1327.6983 0.69834526 799 P25205 MCM3 DNA replication licensing factor MCM3 yes yes 1 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 74.176 74.099 2 6.341E-31 25776 20211116_3439_TMUAki_TMT10x_S_F1 195.79 173.29 7613000 12756000 147490 12183000 8528200 12307000 9535400 8478700 8551100 8966600 9484300 7089300 11901000 744400 12471000 8209100 12444000 9589000 8828400 8775400 8737100 9120300 4 4 3 4 4 4 4 4 4 4 4 4589700 7710200 15388 7229700 4452900 8778900 5529500 4867900 4958900 5313600 5393000 4273600 7192600 392940 7432600 4297600 8760000 5534800 5160100 5085200 5171100 5189000 2 2 2 2 2 2 2 2 2 2 2 3023300 5046200 132100 4953300 4075300 3527900 4005900 3610800 3592200 3653000 4091300 2815700 4708300 351450 5038400 3911500 3683800 4054200 3668300 3690200 3566000 3931300 2 2 1 2 2 2 2 2 2 2 2 5712900000 2999400000 2713500000 814 799 774 4393;4394;4395;4396 5335;5336;5337;5338 5337 4 AGVAFFHLQDYDQAR Unmodified 1736.8271 0.82706802 2200 Q8N5M4 TTC9C Tetratricopeptide repeat protein 9C yes yes 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 58.749 58.954 3 2.858E-14 17511 20211116_3445_TMUAki_TMT10x_S_F6 144.8 133.7 10328000 17548000 116510 18373000 12217000 12919000 11688000 12656000 12334000 12499000 13805000 9616400 16378000 905280 18604000 11703000 13492000 11904000 12877000 12572000 12213000 13271000 4 4 2 4 4 4 4 4 4 4 4 2444200 3780300 0 3961800 3576200 4919500 3416700 3116700 2698600 2767800 2899400 2275100 3528100 138790 4043200 3419900 4912100 3451800 3249400 2783900 2717600 2790700 1 1 0 1 1 1 1 1 1 1 1 7883600 13768000 116510 14411000 8641100 7999800 8271600 9539600 9635500 9731000 10905000 7341300 12850000 766490 14561000 8282800 8579800 8451800 9627200 9787900 9495900 10481000 3 3 2 3 3 3 3 3 3 3 3 1247000000 585850000 661120000 815 2200 775 4397;4398;4399 5339;5340;5341;5342 5340 4 AGVAPLQVK Unmodified 881.53345 0.53345218 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 43.601 43.88 2 0.00072801 11119 20211116_3447_TMUAki_TMT10x_S_F8 113.7 62.73 2408900 4467800 28760 4371000 2446600 2063000 1915100 3838300 3600800 2928100 4441300 2243100 4168600 216590 4431400 2333600 2283900 2022600 3785700 3619300 2897200 4258400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2408900 4467800 28760 4371000 2446600 2063000 1915100 3838300 3600800 2928100 4441300 2243100 4168600 216590 4431400 2333600 2283900 2022600 3785700 3619300 2897200 4258400 2 2 1 2 2 2 2 2 2 2 2 83092000 0 83092000 816 755 776 4400;4401 5343;5344 5344 2 AGVGEPPEPGGRPEPGPR Unmodified 1754.87 0.86999547 1742 Q14997 PSME4 Proteasome activator complex subunit 4 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 31.481 31.37 3 1.2515E-17 9544 20211116_3441_TMUAki_TMT10x_S_F3 154.49 136.79 501060 847810 18424 929460 991200 871820 600350 589640 678790 526430 741530 466680 791400 65577 941570 941690 885370 631830 611860 689340 516750 713380 2 2 2 2 2 2 2 2 2 2 2 282990 481910 8723.2 509700 784340 712570 382620 332720 388770 306470 411600 263550 449780 38613 521050 742490 704870 409310 356670 396050 300390 396350 1 1 1 1 1 1 1 1 1 1 1 218080 365900 9701 419750 206860 159260 217730 256920 290020 219970 329930 203120 341620 26964 420520 199210 180500 222520 255180 293290 216350 317030 1 1 1 1 1 1 1 1 1 1 1 101690000 47864000 53826000 817 1742 777 4402;4403;4404 5345;5346;5347 5347 3 AGVHAPEEVGPR Unmodified 1217.6153 0.61528433 2526 Q96NT0;Q96NT0-2 CCDC115 Coiled-coil domain-containing protein 115 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 29.836 29.59 3 0.00017689 8890 20211116_3441_TMUAki_TMT10x_S_F3 86.114 56.738 397010 677010 3037.7 550780 543810 606880 496830 430780 454330 393380 513870 369650 631250 35187 571640 520270 610830 505100 445750 466180 385740 493860 2 2 1 2 2 2 2 2 2 2 2 166480 271920 3037.7 221930 302810 394900 225780 252310 286960 233130 245050 155030 253540 18542 232520 288590 388430 234940 263150 287770 228470 237690 1 1 1 1 1 1 1 1 1 1 1 230530 405090 0 328860 241010 211970 271060 178470 167380 160260 268810 214630 377710 16644 339130 231680 222400 270160 182600 178410 157260 256180 1 1 0 1 1 1 1 1 1 1 1 16002000 6584100 9418100 818 2526 778 4405;4406 5348;5349 5349 2 AGVHIKLPNLGKHEK Unmodified 1639.9522 0.95220895 642 P12277 CKB Creatine kinase B-type yes yes 0 0 0 2 By MS/MS By MS/MS 2 0.577 1 4 1 3 3 39.14 39.037 5;6 1.6284E-09 12617 20211116_3441_TMUAki_TMT10x_S_F3 127.71 110.77 7748400 11713000 23937 13080000 10801000 8359600 7918900 7199200 7109700 7090700 9069300 7214500 10934000 680760 13177000 10284000 8781300 8158100 7374900 7337800 6929600 8688200 5 5 3 5 5 5 5 5 5 5 5 2166200 2911900 0 3447600 4981600 4000700 2499800 1992100 2090300 1896700 2541800 2016900 2719100 209170 3487600 4713600 3996400 2652800 2123900 2160500 1856400 2438000 1 1 0 1 1 1 1 1 1 1 1 5582200 8800900 23937 9632800 5819700 4358900 5419000 5207100 5019400 5194000 6527500 5197600 8215300 471600 9689500 5570500 4784900 5505300 5251000 5177400 5073200 6250100 4 4 3 4 4 4 4 4 4 4 4 723060000 394340000 328730000 819 642 779 4407;4408;4409;4410;4411;4412 5350;5351;5352;5353;5354 5354 5 AGVIFPVGR Unmodified 914.53379 0.53378653 3051;327 Q9P0M6;O75367;O75367-2;O75367-3 H2AFY2;H2AFY Core histone macro-H2A.2;Core histone macro-H2A.1 no no 0 0 0 0 By MS/MS By MS/MS 4.2 2.79 2 2 2 2 2 5 5 51.831 51.753 2 3.9676E-06 16290 20211116_3429_TMUAki_TMT10x_P_F2 187.72 138.36 93305000 143060000 349670 156500000 140870000 167390000 104810000 121150000 120690000 113600000 125720000 86872000 133540000 7922200 158870000 134140000 168820000 108690000 125280000 122270000 111260000 121120000 10 10 5 10 10 10 10 10 10 10 10 66932000 100570000 262250 109640000 113390000 143810000 80688000 86274000 86117000 82036000 90097000 62320000 93872000 6179100 111720000 107900000 143110000 83723000 90495000 87513000 80296000 86790000 6 6 4 6 6 6 6 6 6 6 6 26373000 42495000 87419 46857000 27482000 23580000 24125000 34874000 34576000 31567000 35624000 24552000 39669000 1743000 47145000 26237000 25711000 24970000 34789000 34755000 30966000 34332000 4 4 1 4 4 4 4 4 4 4 4 18517000000 11914000000 6603100000 820 3051;327 780 4413;4414;4415;4416;4417;4418;4419;4420;4421;4422 5355;5356;5357;5358;5359;5360;5361;5362;5363;5364 5357 10 AGVLAGHDNR Unmodified 1008.5101 0.51009098 1376;1377 P62879;Q9HAV0;P62879-2;P62873;P62873-2 GNB2;GNB4;GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein subunit beta-4;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 no no 0 0 0 0 By MS/MS By MS/MS 3.67 0.943 1 1 3 1 5 1 27.271 27.072 2;3 5.4268E-05 4282 20211116_3431_TMUAki_TMT10x_P_F4 91.584 67.429 955880 1577800 1381.6 1178300 1062400 1562100 1124300 943470 859980 847120 1174600 890010 1470800 79640 1236000 1020100 1553800 1129000 987600 897620 831310 1123400 3 3 1 3 3 3 3 3 3 3 3 686140 1114200 1381.6 858330 715000 1242400 787420 655860 608270 604870 830380 638870 1038700 58279 899450 687460 1228800 789390 694910 634530 592850 794170 2 2 1 2 2 2 2 2 2 2 2 269740 463610 0 319950 347360 319730 336870 287620 251710 242250 344250 251140 432060 21361 336550 332670 325020 339610 292690 263080 238460 329220 1 1 0 1 1 1 1 1 1 1 1 14191000 7029200 7161500 821 1377;1376 781 4423;4424;4425;4426;4427;4428 5365;5366;5367;5368;5369;5370 5366 6 AGVLAHLEEER Unmodified 1222.6306 0.63060004 934;935 P35579;P35579-2;P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH9;MYH10 Myosin-9;Myosin-10 no no 0 0 0 0 By MS/MS 2 0 1 1 42.833 42.545 3 0.090423 12569 20211116_3429_TMUAki_TMT10x_P_F2 38.58 7.2076 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 822 934;935 782 4429 5371 5371 1 AGVLAHLEEERDLK Unmodified 1578.8366 0.83657007 934;935 P35579;P35579-2;P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH9;MYH10 Myosin-9;Myosin-10 no no 0 0 0 1 By MS/MS By MS/MS 4.5 1.12 2 2 2 2 4 4 47.953 48.016 4 7.5889E-24 16357 20211116_3441_TMUAki_TMT10x_S_F3 194.86 137.06 22191000 35728000 239310 44973000 45046000 43230000 27094000 29861000 23057000 25414000 33170000 20663000 33373000 2347100 45201000 42753000 43847000 28297000 30902000 23992000 25004000 31685000 12 12 11 12 12 12 12 12 12 12 12 14633000 23587000 151110 29309000 38862000 37846000 21972000 19658000 15462000 16974000 22022000 13626000 22031000 1657600 29624000 36845000 37620000 22969000 20825000 16247000 16688000 21041000 7 7 6 7 7 7 7 7 7 7 7 7557500 12141000 88205 15664000 6184000 5383600 5122600 10203000 7595600 8440700 11148000 7037400 11342000 689540 15578000 5908200 6226900 5328200 10078000 7745000 8316200 10644000 5 5 5 5 5 5 5 5 5 5 5 4460900000 2600300000 1860600000 823 934;935 783 4430;4431;4432;4433;4434;4435;4436;4437 5372;5373;5374;5375;5376;5377;5378;5379;5380;5381;5382;5383 5379 12 AGVNTVTTLVENK Unmodified 1344.7249 0.72489436 1358 P62424 RPL7A 60S ribosomal protein L7a yes yes 0 0 0 0 By MS/MS 5 0 1 1 57.991 58.179 2 5.4999E-06 17967 20211116_3433_TMUAki_TMT10x_P_F5 103.46 74.3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 824 1358 784 4438 5384 5384 1 AGVNTVTTLVENKK Unmodified 1472.8199 0.81985737 1358 P62424 RPL7A 60S ribosomal protein L7a yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 53.864 53.796 3 2.1752E-29 17632 20211116_3439_TMUAki_TMT10x_S_F1 201.3 167.03 37775000 57231000 508630 80726000 75197000 65658000 39734000 50967000 51660000 41704000 57305000 35176000 53491000 4129900 80469000 71241000 67487000 42527000 52284000 52234000 41112000 55105000 8 8 8 8 8 8 8 8 8 8 8 20292000 30498000 305020 41754000 62099000 53530000 28050000 26588000 26665000 22300000 29399000 18896000 28500000 2552200 41977000 58706000 53201000 30189000 28264000 27284000 21956000 28275000 4 4 4 4 4 4 4 4 4 4 4 17483000 26733000 203610 38973000 13098000 12128000 11684000 24379000 24995000 19403000 27906000 16280000 24991000 1577800 38493000 12535000 14286000 12338000 24020000 24949000 19155000 26830000 4 4 4 4 4 4 4 4 4 4 4 2847400000 1832100000 1015300000 825 1358 785 4439;4440;4441;4442 5385;5386;5387;5388;5389;5390;5391;5392 5389 8 AGVSGCFSTFQPTTGHR Unmodified 1808.8264 0.82641609 2442 Q96EK4 THAP11 THAP domain-containing protein 11 yes yes 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 41.926 41.784 3 2.9138E-23 10569 20211116_3428_TMUAki_TMT10x_P_F1 179.56 158.98 787430 1328300 51565 1767200 2345700 2141400 1338300 1205200 1175400 992750 1396800 733520 1241100 130550 1777500 2226700 2137400 1405100 1266300 1210800 978320 1340600 2 2 1 2 2 2 2 2 2 2 2 787430 1328300 51565 1767200 2345700 2141400 1338300 1205200 1175400 992750 1396800 733520 1241100 130550 1777500 2226700 2137400 1405100 1266300 1210800 978320 1340600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 203710000 203710000 0 826 2442 786 4443;4444;4445;4446 5393;5394;5395;5396 5393 4 AGVSVKPFQVK Unmodified 1158.6761 0.67609367 1500 Q02880;Q02880-2 TOP2B DNA topoisomerase 2-beta yes no 0 0 0 1 By MS/MS 3 0 1 1 47.126 46.78 3 0.0012632 15813 20211116_3441_TMUAki_TMT10x_S_F3 77.593 44.184 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 827 1500 787 4447 5397 5397 1 AGWNAYIDNLMADGTCQDAAIVGYK Acetyl (Protein N-term);Oxidation (M) 2774.2316 0.23161579 540 P07737;CON__P02584 PFN1 Profilin-1 yes no 1 0 1 0 By MS/MS By MS/MS 4.25 1.39 1 2 1 2 2 3 5 81.514 81.502 3 1.2856E-11 26113 20211116_3434_TMUAki_TMT10x_P_F6 68.552 57.863 24930000 37235000 108600 48093000 29619000 22268000 34700000 9677600 9295700 14367000 28408000 23212000 34785000 2097500 47910000 28526000 23995000 34146000 10615000 11247000 13838000 26812000 9 9 5 9 9 9 9 9 9 9 9 11793000 18686000 67764 22993000 9824100 12444000 12741000 4545500 5064700 6965600 13528000 10981000 17452000 1013300 22995000 9497300 13150000 12533000 5092600 5788700 6703200 12788000 4 4 4 4 4 4 4 4 4 4 4 13137000 18549000 40839 25100000 19795000 9824300 21959000 5132000 4231000 7401300 14880000 12231000 17333000 1084200 24915000 19028000 10845000 21612000 5522600 5458000 7135000 14024000 5 5 1 5 5 5 5 5 5 5 5 6494900000 2537200000 3957800000 828 540 788 4448;4449;4450;4451;4452;4453;4454;4455 5398;5399;5400;5401;5402;5403;5404;5405;5406 5401 470 9 AGWNAYIDNLMADGTCQDAAIVGYK Acetyl (Protein N-term) 2758.2367 0.23670117 540 P07737;CON__P02584 PFN1 Profilin-1 yes no 1 0 0 0 By MS/MS By MS/MS 3.33 1.11 2 1 2 1 3 3 83.063 83.056 3 8.1706E-23 28295 20211116_3442_TMUAki_TMT10x_S_F4 91.729 87.701 21259000 27650000 173390 47339000 21113000 11127000 27215000 3768100 3607200 5098600 19011000 19795000 25874000 1871100 46361000 20404000 13404000 26555000 4242300 5249300 4924800 17863000 9 9 5 9 9 9 9 9 9 9 9 12521000 15769000 87113 27586000 11074000 6872900 13854000 1857700 1768700 2611900 10867000 11658000 14758000 1077300 26998000 10692000 8166600 13533000 2164500 2651000 2519900 10202000 4 4 2 4 4 4 4 4 4 4 4 8737800 11881000 86277 19753000 10039000 4254100 13361000 1910300 1838500 2486700 8144200 8136200 11116000 793820 19364000 9712500 5237100 13022000 2077800 2598300 2404900 7661200 5 5 3 5 5 5 5 5 5 5 5 2817800000 1658100000 1159700000 829 540 788 4456;4457;4458;4459;4460;4461 5407;5408;5409;5410;5411;5412;5413;5414;5415 5412 9 AGYIIPLQGPGLTTTESR Unmodified 1872.9945 0.99452728 604 P10253 GAA Lysosomal alpha-glucosidase;76 kDa lysosomal alpha-glucosidase;70 kDa lysosomal alpha-glucosidase yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 66.669 66.581 3 1.2243E-12 20328 20211116_3447_TMUAki_TMT10x_S_F8 137.17 110.45 5432700 9268700 54272 8495500 6883000 6002800 5995500 6339900 6116500 6692100 7305100 5058500 8645800 487260 8684100 6578500 6276600 6131600 6439500 6259400 6521400 7010200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5432700 9268700 54272 8495500 6883000 6002800 5995500 6339900 6116500 6692100 7305100 5058500 8645800 487260 8684100 6578500 6276600 6131600 6439500 6259400 6521400 7010200 2 2 1 2 2 2 2 2 2 2 2 611030000 0 611030000 830 604 789 4462;4463 5416;5417;5418 5417 3 AGYPQYVSEILEK Unmodified 1495.7559 0.75586013 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.667 4 4 1 4 5 73.29 73.246 2;3 5.6639E-22 24230 20211116_3433_TMUAki_TMT10x_P_F5 176.42 141.2 21567000 38360000 110840 34717000 26205000 25403000 23505000 22073000 19486000 20159000 24828000 20081000 35780000 1765000 35536000 25053000 26379000 23859000 22553000 20189000 19767000 23785000 6 6 3 6 6 6 6 6 6 6 6 4173700 6980000 39953 7097200 3528300 6634400 3749600 3918500 3767600 3649700 4705000 3886400 6513600 374220 7225100 3391100 6726200 3792400 4113100 3865400 3575600 4509800 2 2 2 2 2 2 2 2 2 2 2 17394000 31380000 70888 27620000 22677000 18769000 19755000 18155000 15718000 16509000 20123000 16194000 29266000 1390800 28310000 21662000 19653000 20067000 18440000 16324000 16192000 19276000 4 4 1 4 4 4 4 4 4 4 4 2434200000 1067500000 1366700000 831 1018 790 4464;4465;4466;4467;4468;4469;4470;4471;4472 5419;5420;5421;5422;5423;5424;5425;5426;5427;5428;5429 5420 11 AGYSLQELFHLTR Unmodified 1533.794 0.79397698 2708 Q9BWH6;Q9BWH6-2 RPAP1 RNA polymerase II-associated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 1 1 1 1 69.758 69.714 3 0.00029207 24115 20211116_3439_TMUAki_TMT10x_S_F1 79.81 62.443 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 832 2708 791 4473;4474 5430;5431 5431 2 AGYTDKVVIGMDVAASEFFR Oxidation (M) 2191.062 0.061954915 520 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 1 1 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 71.719 71.926 3 6.901E-05 24913 20211116_3446_TMUAki_TMT10x_S_F7 75.533 70.323 1388300 2479200 0 2203300 2546500 4279300 1832000 11290000 12476000 9657600 4865500 1292700 2312300 0 2298300 2423800 4389000 2225100 11077000 11957000 9499400 4929100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1388300 2479200 0 2203300 2546500 4279300 1832000 11290000 12476000 9657600 4865500 1292700 2312300 0 2298300 2423800 4389000 2225100 11077000 11957000 9499400 4929100 1 1 0 1 1 1 1 1 1 1 1 907560000 0 907560000 833 520 792 4475;4476 5432;5433 5433 429 2 AHAAIRENPVYEK Unmodified 1496.7736 0.77357588 1051 P46777 RPL5 60S ribosomal protein L5 yes yes 0 0 0 1 By MS/MS 4.67 0.471 1 2 3 31.369 31.338 3;4 1.0324E-14 7219 20211116_3433_TMUAki_TMT10x_P_F5 168.89 134.5 643780 1024200 18793 976340 1399900 1511400 743170 1023600 936920 797490 999020 599570 955470 81478 1007400 1326900 1495700 794170 1058600 946880 788180 961800 2 2 2 2 2 2 2 2 2 2 2 643780 1024200 18793 976340 1399900 1511400 743170 1023600 936920 797490 999020 599570 955470 81478 1007400 1326900 1495700 794170 1058600 946880 788180 961800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78370000 78370000 0 834 1051 793 4477;4478;4479 5434;5435 5435 2 AHAAQVTCVAASPHKDSVFLSCSEDNR Unmodified 2956.3556 0.35558753 2627 Q9BQA1 WDR77 Methylosome protein 50 yes yes 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 38.128 38.208 5 9.473E-18 8683 20211116_3434_TMUAki_TMT10x_P_F6 132.35 118.62 444180 766160 5062.9 825680 849510 1029300 565160 631380 620050 536450 696730 413550 715130 39283 841170 807190 1027100 589830 659190 631120 527840 669730 3 3 1 3 3 3 3 3 3 3 3 342200 577400 0 617640 758100 929060 498040 481230 431370 403280 531260 318560 538920 26258 631910 719840 917190 516710 509550 445300 397080 509390 2 2 0 2 2 2 2 2 2 2 2 101980 188760 5062.9 208040 91411 100250 67122 150150 188690 133170 165470 94991 176200 13025 209260 87345 109900 73118 149640 185810 130760 160340 1 1 1 1 1 1 1 1 1 1 1 67998000 50733000 17265000 835 2627 794 4480;4481 5436;5437;5438 5436 3 AHAASVFLTLLHFDSPPIPHVPHRGELEK Unmodified 3214.704 0.70398676 2669 Q9BTW9;Q9BTW9-4 TBCD Tubulin-specific chaperone D yes no 0 0 0 1 By MS/MS 4 0 2 2 98.385 98.31 7 0.0016691 33009 20211116_3442_TMUAki_TMT10x_S_F4 52.707 45.514 45551 66132 40.745 71088 51787 48015 53819 59954 55372 46998 55449 42412 61727 1867.9 71826 49710 50606 54533 59967 56267 46435 53487 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 45551 66132 40.745 71088 51787 48015 53819 59954 55372 46998 55449 42412 61727 1867.9 71826 49710 50606 54533 59967 56267 46435 53487 2 2 1 2 2 2 2 2 2 2 2 4484200 0 4484200 836 2669 795 4482;4483 5439;5440 5439 2 AHAAVWNAQEAQADFAK Unmodified 1826.87 0.86999547 66 O00170 AIP AH receptor-interacting protein yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 47.785 47.91 3 0.031891 12982 20211116_3445_TMUAki_TMT10x_S_F6 39.753 23.447 10229000 17340000 51760 18309000 14493000 18600000 10538000 13702000 15107000 12790000 12680000 9524300 16183000 877280 18614000 13796000 18821000 11037000 14152000 15083000 12529000 12307000 2 2 1 2 2 2 2 2 2 2 2 5424200 9229300 0 9149200 11077000 14832000 7512400 7880700 8585100 6785900 6556200 5049800 8611600 450120 9424300 10527000 14603000 7839800 8330600 8614900 6672500 6387400 1 1 0 1 1 1 1 1 1 1 1 4805200 8110300 51760 9159600 3416000 3767900 3025300 5821700 6521800 6004100 6123700 4474500 7571700 427160 9189500 3268700 4217200 3197300 5820900 6467700 5856400 5919600 1 1 1 1 1 1 1 1 1 1 1 604620000 281570000 323050000 837 66 796 4484;4485 5441;5442 5442 2 AHADDELAALR Unmodified 1180.5836 0.58364985 1080 P48681 NES Nestin yes yes 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 35.691 35.566 3 2.7769E-09 9730 20211116_3429_TMUAki_TMT10x_P_F2 158.47 116.13 1986500 3198100 40211 3276800 3342900 3120900 2354100 1776600 1924200 1665500 2617100 1850000 2984500 221170 3335000 3182900 3158800 2426200 1870800 2001000 1631100 2503200 3 3 3 3 3 3 3 3 3 3 3 1280600 2053700 22194 1990000 2667700 2545000 1645700 1266600 1424100 1148600 1704300 1192600 1916100 146280 2042900 2533500 2529700 1715900 1348800 1468400 1126600 1635400 2 2 2 2 2 2 2 2 2 2 2 705880 1144400 18017 1286800 675210 575960 708350 509920 500160 516870 912840 657380 1068400 74884 1292100 649340 629120 710330 521990 532580 504510 867810 1 1 1 1 1 1 1 1 1 1 1 165110000 127050000 38056000 838 1080 797 4486;4487;4488;4489 5443;5444;5445 5444 3 AHAIITLGK Unmodified 922.56 0.56000128 1016 P42695 NCAPD3 Condensin-2 complex subunit D3 yes yes 0 0 0 0 By MS/MS 1.5 0.5 1 1 2 40.619 40.574 3 0.0022466 10376 20211116_3440_TMUAki_TMT10x_S_F2 76.827 58.047 545810 831540 12946 943020 542920 453300 555300 546810 548350 521150 691880 508300 776330 57277 946840 521670 494100 562400 550470 563250 510040 662990 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 545810 831540 12946 943020 542920 453300 555300 546810 548350 521150 691880 508300 776330 57277 946840 521670 494100 562400 550470 563250 510040 662990 1 1 1 1 1 1 1 1 1 1 1 39746000 0 39746000 839 1016 798 4490;4491 5446 5446 1 AHDGAEVCSAIFSK Unmodified 1490.6824 0.68237762 1516 Q05048 CSTF1 Cleavage stimulation factor subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 46.048 46.208 3 0.0044093 12010 20211116_3444_TMUAki_TMT10x_S_F5 60.55 40.711 6013900 10201000 97727 11948000 7935200 8896400 6507900 8854200 9977900 7837400 9040100 5600200 9525300 615900 12020000 7578700 9250300 6783300 8974000 9965700 7696300 8749600 3 3 2 3 3 3 3 3 3 3 3 1944000 3513000 65562 4150600 4424300 5512400 3272700 3168600 3627300 2838300 3096200 1810600 3280400 257010 4209600 4217200 5479000 3390800 3330000 3655800 2785700 3003200 1 1 1 1 1 1 1 1 1 1 1 4069800 6688200 32165 7797800 3510900 3384000 3235200 5685600 6350700 4999100 5943900 3789600 6245000 358890 7810700 3361400 3771400 3392500 5644100 6309900 4910700 5746400 2 2 1 2 2 2 2 2 2 2 2 363090000 187060000 176030000 840 1516 799 4492;4493;4494;4495 5447;5448;5449 5449 3 AHEILPNLVCCSAK Unmodified 1610.7909 0.79088221 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 49.403 49.677 3 1.4857E-09 13421 20211116_3447_TMUAki_TMT10x_S_F8 132.31 112.73 37307000 60810000 431190 75950000 48324000 44311000 34483000 35095000 32037000 35692000 46745000 34739000 56799000 3566600 75939000 46008000 46886000 35626000 36165000 33222000 34834000 44637000 8 8 5 8 8 8 8 8 8 8 8 14365000 23066000 286180 28390000 31226000 29371000 19421000 13345000 11931000 12831000 17800000 13377000 21543000 1650100 28601000 29658000 29501000 20085000 14361000 12674000 12552000 16989000 3 3 2 3 3 3 3 3 3 3 3 22941000 37743000 145010 47560000 17098000 14940000 15063000 21750000 20106000 22861000 28944000 21361000 35255000 1916500 47338000 16350000 17385000 15541000 21804000 20548000 22282000 27648000 5 5 3 5 5 5 5 5 5 5 5 3032500000 1596700000 1435800000 841 1146 800 4496;4497;4498;4499 5450;5451;5452;5453;5454;5455;5456;5457 5455 8 AHEPTYFTVDCAEAGQGDVSIGIK Unmodified 2564.1853 0.18531753 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS 4 0 2 2 60.441 60.329 3;4 9.8719E-17 19088 20211116_3442_TMUAki_TMT10x_S_F4 127.01 110.7 4489600 7657800 64156 7154300 5886100 5227600 4872800 6223800 5345900 5706800 6688400 4180000 7143600 368370 7305300 5616900 5466800 5010300 6262200 5465500 5594900 6410500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4489600 7657800 64156 7154300 5886100 5227600 4872800 6223800 5345900 5706800 6688400 4180000 7143600 368370 7305300 5616900 5466800 5010300 6262200 5465500 5594900 6410500 2 2 1 2 2 2 2 2 2 2 2 1245200000 0 1245200000 842 755 801 4500;4501 5458;5459 5459 2 AHEVGAQGGPPVAQVEQDLPISR Unmodified 2354.1979 0.19787154 1720 Q14676;Q14676-2;Q14676-3;Q14676-4 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 51.819 51.69 3 1.9077E-36 15502 20211116_3442_TMUAki_TMT10x_S_F4 184.95 165.56 5514100 9818900 50330 10663000 8372100 10350000 6310400 8876000 8898600 7679800 8095400 5134200 9165200 502130 10814000 7976000 10530000 6588800 9063100 8911100 7549800 7834200 6 6 4 6 6 6 6 6 6 6 6 3052700 5127600 47460 5666600 5942800 8232200 4455800 4694100 4756300 4284700 4478600 2842700 4786600 337800 5781100 5663800 8148700 4606700 4938900 4815700 4201600 4328900 3 3 3 3 3 3 3 3 3 3 3 2461400 4691300 2869.6 4996700 2429200 2118000 1854600 4181900 4142300 3395100 3616800 2291500 4378600 164330 5032900 2312200 2381600 1982100 4124200 4095300 3348200 3505300 3 3 1 3 3 3 3 3 3 3 3 921310000 298960000 622350000 843 1720 802 4502;4503;4504 5460;5461;5462;5463;5464;5465 5465 6 AHFGLPSVEAEDKEGKPPISVK Unmodified 2334.222 0.22196103 2717 Q9BXS5;Q9BXS5-2 AP1M1 AP-1 complex subunit mu-1 yes no 0 0 0 2 By MS/MS By MS/MS 7 0 2 1 1 51.119 51.702 5 5.4142E-14 15990 20211116_3435_TMUAki_TMT10x_P_F7 126.69 114.25 16607000 28922000 216700 25625000 28534000 38822000 22028000 27633000 27206000 24189000 25412000 15464000 26975000 1720800 26572000 27208000 38484000 22844000 28557000 27388000 23766000 24569000 3 3 2 3 3 3 3 3 3 3 3 12161000 20806000 122330 18184000 24370000 34084000 18698000 19966000 19621000 17069000 18265000 11324000 19405000 1268200 18973000 23230000 33425000 19291000 20926000 19872000 16790000 17662000 2 2 1 2 2 2 2 2 2 2 2 4445700 8115200 94368 7441600 4164500 4737500 3329600 7667100 7585700 7119200 7146700 4140100 7569800 452590 7598800 3977800 5058900 3552800 7631100 7515300 6975600 6907800 1 1 1 1 1 1 1 1 1 1 1 1504000000 958130000 545830000 844 2717 803 4505;4506 5466;5467;5468 5466 3 AHFPGPVTR Unmodified 980.5192 0.5191991 2333 Q8WZA9 IRGQ Immunity-related GTPase family Q protein yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 31.288 31.313 3 0.00084769 8467 20211116_3439_TMUAki_TMT10x_S_F1 87.258 73.881 357140 592240 3707.8 523750 428080 511940 547840 499790 380520 378790 455150 332560 552360 34059 538970 413700 521990 544260 505140 397080 374940 436760 2 2 2 2 2 2 2 2 2 2 2 172860 261160 344.93 249030 228650 322330 271330 249160 178500 178890 226610 160960 243640 15434 256010 220340 322210 270120 254920 187360 177600 217110 1 1 1 1 1 1 1 1 1 1 1 184280 331080 3362.9 274720 199430 189610 276510 250630 202020 199910 228550 171610 308720 18624 282970 193360 199780 274140 250230 209720 197330 219650 1 1 1 1 1 1 1 1 1 1 1 34078000 10353000 23726000 845 2333 804 4507;4508 5469;5470 5470 2 AHFQNFPNGVTDFIK Unmodified 1733.8526 0.85255449 2381 Q92973;Q92973-2 TNPO1 Transportin-1 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 62.524 62.505 3 3.8003E-07 19231 20211116_3436_TMUAki_TMT10x_P_F8 116.84 81.95 55434000 94403000 818740 91945000 62841000 84795000 66991000 57896000 53673000 59844000 69499000 51621000 88079000 5462600 93866000 60409000 86220000 67322000 60281000 55748000 58367000 66554000 11 11 11 11 11 11 11 11 11 11 11 29507000 49028000 260130 48842000 35117000 57822000 38181000 31190000 28837000 32125000 36048000 27476000 45747000 2767400 49974000 33765000 57753000 38280000 33084000 30001000 31336000 34551000 5 5 5 5 5 5 5 5 5 5 5 25927000 45376000 558610 43104000 27723000 26972000 28809000 26706000 24836000 27720000 33451000 24145000 42332000 2695300 43892000 26644000 28467000 29043000 27197000 25746000 27031000 32002000 6 6 6 6 6 6 6 6 6 6 6 3093200000 1577400000 1515800000 846 2381 805 4509;4510;4511;4512 5471;5472;5473;5474;5475;5476;5477;5478;5479;5480;5481 5475 11 AHGFTFTR Unmodified 935.46135 0.46134987 557 P08559;P08559-3;P08559-4;P08559-2 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 32.779 32.794 3 0.0061563 7084 20211116_3428_TMUAki_TMT10x_P_F1 75.825 61.839 2094900 3002000 31906 3634400 2247100 1547100 1979100 777330 688800 908680 1941500 1950800 2803600 205550 3631800 2149800 1687500 1981600 833120 801650 882050 1834100 2 2 2 2 2 2 2 2 2 2 2 597790 871920 6038.5 967620 830250 703070 616780 261250 215760 264830 543600 556650 813950 58444 976410 791090 722630 624370 288030 248680 258500 514240 1 1 1 1 1 1 1 1 1 1 1 1497100 2130100 25867 2666800 1416800 844040 1362400 516080 473030 643850 1397900 1394100 1989600 147100 2655400 1358700 964920 1357200 545090 552960 623550 1319900 1 1 1 1 1 1 1 1 1 1 1 122200000 68360000 53836000 847 557 806 4513;4514 5482;5483 5482 2 AHGGYSVFAGVGER Unmodified 1405.6739 0.67386184 518 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5.13 2.11 2 2 1 3 2 7 3 3 8 15 36.838 37.003 2;3 3.3897E-23 9158 20211116_3445_TMUAki_TMT10x_S_F6 186.74 160.14 17360000 27935000 400230 29602000 25705000 25802000 19335000 25971000 23208000 21283000 25069000 16166000 26072000 1833500 30025000 24505000 26524000 20065000 26257000 23506000 20979000 24126000 31 31 20 31 31 31 31 31 31 31 31 7249600 11239000 141700 11395000 15000000 16943000 9590900 11611000 9289600 9204700 10116000 6750700 10488000 776750 11697000 14251000 16798000 10002000 12002000 9493100 9088900 9733400 11 11 6 11 11 11 11 11 11 11 11 10110000 16696000 258530 18207000 10705000 8859500 9744100 14360000 13918000 12078000 14953000 9415400 15585000 1056800 18328000 10254000 9725700 10063000 14255000 14013000 11890000 14392000 20 20 14 20 20 20 20 20 20 20 20 3408500000 2258700000 1149900000 848 518 807 4515;4516;4517;4518;4519;4520;4521;4522;4523;4524;4525;4526;4527;4528;4529;4530;4531;4532;4533;4534;4535;4536;4537 5484;5485;5486;5487;5488;5489;5490;5491;5492;5493;5494;5495;5496;5497;5498;5499;5500;5501;5502;5503;5504;5505;5506;5507;5508;5509;5510;5511;5512;5513;5514;5515;5516 5513 33 AHGHCLHEIFLLR Unmodified 1601.8249 0.82489995 61 O00116 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal yes yes 0 0 0 0 By MS/MS 8 0 1 1 39.236 39.491 4 0.013721 9866 20211116_3436_TMUAki_TMT10x_P_F8 56.087 40.123 710430 1072400 18144 1223200 1553300 1315000 962230 818260 712600 842270 860820 661620 1001200 87615 1238600 1475600 1322800 999210 857740 741130 821610 825810 1 1 1 1 1 1 1 1 1 1 1 710430 1072400 18144 1223200 1553300 1315000 962230 818260 712600 842270 860820 661620 1001200 87615 1238600 1475600 1322800 999210 857740 741130 821610 825810 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 43825000 43825000 0 849 61 808 4538 5517 5517 1 AHIAQLCEK Unmodified 1068.5386 0.53861391 1471 Q00610;Q00610-2;P53675;P53675-2 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 0 By MS/MS By MS/MS 4.8 0.4 1 4 2 3 30.664 30.712 3 0.00014746 8126 20211116_3433_TMUAki_TMT10x_P_F5 124.74 107.72 1604500 2646300 31386 2546700 2810300 2777000 1866900 1613000 1619000 1480100 2121500 1494100 2468900 175040 2608500 2672600 2788600 1935400 1694700 1675700 1451000 2031000 5 5 3 5 5 5 5 5 5 5 5 1266200 2098800 27534 2010200 2415500 2474600 1489200 1304600 1301100 1216900 1683700 1179100 1958000 146730 2064000 2294500 2466000 1553200 1382900 1345400 1192100 1612400 2 2 2 2 2 2 2 2 2 2 2 338330 547520 3852.2 536450 394800 302350 377710 308340 317900 263220 437770 315010 510860 28313 544550 378090 322590 382170 311840 330280 258940 418590 3 3 1 3 3 3 3 3 3 3 3 153730000 101360000 52367000 850 1471 809 4539;4540;4541;4542;4543 5518;5519;5520;5521;5522;5523 5519 6 AHIVFDFHQAADGIQEQQR Unmodified 2209.0665 0.066463441 874 P30520 ADSS Adenylosuccinate synthetase isozyme 2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.29 0.7 1 3 3 2 5 49.849 50.005 3;4 8.615E-24 13443 20211116_3434_TMUAki_TMT10x_P_F6 165.66 147.52 13184000 20347000 333430 22478000 18720000 22493000 15133000 17897000 17317000 16376000 18027000 12278000 18993000 1463900 22781000 17878000 22810000 15605000 18383000 17547000 16057000 17368000 9 9 7 9 9 9 9 9 9 9 9 7632700 11166000 217800 12269000 13535000 17058000 10399000 10364000 9745600 9634800 10455000 7108400 10423000 913350 12510000 12912000 16932000 10692000 10854000 9968200 9439900 10063000 4 4 3 4 4 4 4 4 4 4 4 5551200 9180600 115630 10209000 5184900 5435500 4733900 7532900 7571800 6741400 7571800 5169500 8570400 550500 10271000 4966400 5878900 4913200 7529400 7578900 6616600 7304200 5 5 4 5 5 5 5 5 5 5 5 2919100000 1072700000 1846500000 851 874 810 4544;4545;4546;4547;4548;4549;4550 5524;5525;5526;5527;5528;5529;5530;5531;5532 5526 9 AHLALEEDLNSEFR Unmodified 1642.7951 0.79509919 1043 P46100;P46100-4;P46100-2;P46100-5;P46100-3;P46100-6 ATRX Transcriptional regulator ATRX yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 54.276 54.054 3 3.3756E-14 17231 20211116_3429_TMUAki_TMT10x_P_F2 136.3 125.69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 852 1043 811 4551;4552 5533;5534 5533 2 AHLGALLAR Unmodified 920.55558 0.55558461 514 P06307 CCK Cholecystokinin;Cholecystokinin-58;Cholecystokinin-58 desnonopeptide;Cholecystokinin-39;Cholecystokinin-33;Cholecystokinin-25;Cholecystokinin-18;Cholecystokinin-12;Cholecystokinin-8;Cholecystokinin-7;Cholecystokinin-5 yes yes 0 0 0 0 By MS/MS 1 0 1 1 34.534 34.534 3 0.0035173 7814 20211116_3428_TMUAki_TMT10x_P_F1 70.919 28.81 192120 309910 15822 390310 392710 446390 278800 453920 269880 486830 295980 179000 289480 33483 393340 374640 451460 288480 462120 275870 474110 284720 1 1 1 1 1 1 1 1 1 1 1 192120 309910 15822 390310 392710 446390 278800 453920 269880 486830 295980 179000 289480 33483 393340 374640 451460 288480 462120 275870 474110 284720 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28664000 28664000 0 853 514 812 4553 5535 5535 1 AHLGQFPGHNEFFR Unmodified 1655.7957 0.79570831 3156 Q9UKI2 CDC42EP3 Cdc42 effector protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 5 3.29 2 1 2 2 3 43.762 43.859 4 4.9533E-07 13651 20211116_3439_TMUAki_TMT10x_S_F1 119.21 106.23 10078000 17919000 234920 16557000 12218000 10120000 12445000 10241000 10200000 10213000 13176000 9385300 16715000 1084400 16891000 11736000 10709000 12543000 10405000 10580000 9975300 12618000 6 6 6 6 6 6 6 6 6 6 6 585800 878920 10089 979410 1113200 1274300 729810 728840 661390 629110 752770 545520 820500 65357 996470 1058400 1267700 758200 765580 679090 618530 723340 1 1 1 1 1 1 1 1 1 1 1 9492100 17040000 224830 15578000 11105000 8845800 11716000 9511700 9538200 9583500 12423000 8839800 15894000 1019100 15895000 10677000 9441800 11784000 9639400 9901100 9356800 11895000 5 5 5 5 5 5 5 5 5 5 5 540010000 284240000 255770000 854 3156 813 4554;4555;4556;4557;4558 5536;5537;5538;5539;5540;5541 5537 6 AHLMEIQVNGGTVAEK Oxidation (M) 1711.8563 0.85631924 975 P39023 RPL3 60S ribosomal protein L3 yes yes 0 0 1 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 40.352 40.48 3 4.2291E-15 9839 20211116_3444_TMUAki_TMT10x_S_F5 144.88 125.58 5208500 7862000 29966 8868500 6226200 6274500 4865300 6061900 7325100 5308200 6777700 4849500 7339900 321850 8937400 5934700 6547300 5082400 6151500 7325000 5215300 6555100 4 4 2 4 4 4 4 4 4 4 4 1931300 2850300 21134 3209600 3943300 3803300 2195000 2218800 2703000 1836400 2551800 1798400 2661000 207990 3257800 3738300 3802300 2333600 2324400 2722300 1809300 2466300 1 1 1 1 1 1 1 1 1 1 1 3277300 5011700 8831.6 5658900 2282900 2471200 2670300 3843200 4622100 3471800 4225900 3051200 4678900 113850 5679600 2196400 2744900 2748800 3827100 4602700 3406000 4088800 3 3 1 3 3 3 3 3 3 3 3 1916100000 673440000 1242700000 855 975 814 4559;4560;4561 5542;5543;5544;5545 5545 1249 4 AHLMEIQVNGGTVAEK Unmodified 1695.8614 0.86140461 975 P39023 RPL3 60S ribosomal protein L3 yes yes 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 47.944 48.093 3 3.3304E-21 13021 20211116_3445_TMUAki_TMT10x_S_F6 162.7 143.38 24080000 36543000 86519 41654000 27540000 27019000 22588000 19086000 16597000 18132000 27359000 22421000 34117000 2050000 41914000 26282000 28250000 22986000 19777000 17528000 17748000 26059000 6 6 4 6 6 6 6 6 6 6 6 10677000 16164000 74626 18728000 16344000 18043000 12297000 9658600 7954900 8695400 12373000 9941900 15092000 995550 18914000 15571000 18235000 12551000 10215000 8439500 8532000 11799000 3 3 2 3 3 3 3 3 3 3 3 13403000 20378000 11892 22926000 11196000 8976400 10291000 9427100 8641900 9436400 14986000 12479000 19025000 1054400 23000000 10711000 10015000 10435000 9562400 9088900 9215700 14260000 3 3 2 3 3 3 3 3 3 3 3 1963400000 1016100000 947390000 856 975 814 4562;4563;4564;4565;4566 5546;5547;5548;5549;5550;5551;5552 5552 7 AHLTFPK Unmodified 812.45447 0.45447358 1341 P62253 UBE2G1 Ubiquitin-conjugating enzyme E2 G1;Ubiquitin-conjugating enzyme E2 G1, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 4.25 3.27 2 1 1 2 2 37.774 37.976 3 0.0088974 8440 20211116_3447_TMUAki_TMT10x_S_F8 83.843 48.744 1067400 1699100 33509 1786400 1116400 1093000 1170300 1101500 1083000 1106300 1412800 994070 1585800 120410 1805900 1073900 1156400 1181600 1119700 1117200 1080200 1352600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1067400 1699100 33509 1786400 1116400 1093000 1170300 1101500 1083000 1106300 1412800 994070 1585800 120410 1805900 1073900 1156400 1181600 1119700 1117200 1080200 1352600 2 2 2 2 2 2 2 2 2 2 2 49431000 0 49431000 857 1341 815 4567;4568;4569;4570 5553;5554;5555;5556 5556 4 AHMGMFTELAILYSK 2 Oxidation (M) 1742.8372 0.8371637 1471 Q00610;Q00610-2;P53675;P53675-2 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 2 0 By MS/MS By MS/MS 8 0 2 1 1 61.879 62.067 3 1.204E-09 18975 20211116_3436_TMUAki_TMT10x_P_F8 127.76 114.09 10500000 17418000 149580 14932000 11752000 28029000 13187000 19556000 21061000 20166000 16000000 9777100 16243000 932610 15605000 11307000 27556000 13545000 20329000 20902000 19670000 15591000 3 3 2 3 3 3 3 3 3 3 3 10500000 17418000 149580 14932000 11752000 28029000 13187000 19556000 21061000 20166000 16000000 9777100 16243000 932610 15605000 11307000 27556000 13545000 20329000 20902000 19670000 15591000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 617450000 617450000 0 858 1471 816 4571;4572 5557;5558;5559;5560 5558 1975;1976 4 AHMGMFTELAILYSK Oxidation (M) 1726.8422 0.84224908 1471 Q00610;Q00610-2;P53675;P53675-2 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 1 0 By MS/MS 1 0 1 1 70.184 70.015 3 0.0028726 24195 20211116_3439_TMUAki_TMT10x_S_F1 64.798 45.475 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 859 1471 816 4573 5561 5561 1975;1976 1 AHNVPVLVCCETYK Unmodified 1688.8014 0.80144689 3127;3128 Q9UI10;Q9UI10-2;Q9UI10-3 EIF2B4 Translation initiation factor eIF-2B subunit delta no no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 43.823 44.187 3 1.9587E-09 13033 20211116_3435_TMUAki_TMT10x_P_F7 129.54 118.75 4328200 7393800 70828 9583900 9285400 9185300 5691400 7720500 7260600 6040800 7703800 4030500 6907300 488490 9616500 8816800 9349000 6009600 7873300 7333500 5968900 7417800 3 3 2 3 3 3 3 3 3 3 3 2713900 4714100 70828 5814200 8031600 8290200 4779800 4753400 4601400 3962800 4847200 2527400 4402900 365490 5890700 7623600 8213300 5012900 4987800 4697600 3902900 4668300 2 2 2 2 2 2 2 2 2 2 2 1614300 2679600 0 3769700 1253800 895120 911610 2967000 2659200 2078000 2856600 1503000 2504500 123010 3725800 1193200 1135800 996680 2885500 2635800 2066100 2749500 1 1 0 1 1 1 1 1 1 1 1 725430000 615910000 109520000 860 3127;3128 817 4574;4575;4576 5562;5563;5564 5562 3 AHPPELK Unmodified 790.43374 0.43373813 25 P62308;A8MWD9 SNRPG;SNRPGP15 Small nuclear ribonucleoprotein G;Putative small nuclear ribonucleoprotein G-like protein 15 yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 31.099 31.084 3 0.0057221 6797 20211116_3431_TMUAki_TMT10x_P_F4 92.925 69.905 4296700 6621900 21509 5470300 4323200 6323200 4286400 2955200 3324800 3109500 4758500 4000500 6174700 342850 5674700 4143500 6313400 4320000 3179300 3475300 3030500 4546000 2 2 1 2 2 2 2 2 2 2 2 4296700 6621900 21509 5470300 4323200 6323200 4286400 2955200 3324800 3109500 4758500 4000500 6174700 342850 5674700 4143500 6313400 4320000 3179300 3475300 3030500 4546000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 122500000 122500000 0 861 25 818 4577;4578 5565;5566 5565 2 AHPVFYQGTYSQALNDAKR Unmodified 2165.0654 0.065400809 2426 Q96CS3 FAF2 FAS-associated factor 2 yes yes 0 0 0 1 By MS/MS By MS/MS 2.8 2.64 2 2 1 3 2 44.682 44.611 4 1.3901E-50 12032 20211116_3440_TMUAki_TMT10x_S_F2 223.07 206.41 7792000 14119000 27132 15241000 13707000 16874000 10023000 12351000 11719000 11016000 11935000 7254600 13179000 360420 15493000 13045000 16987000 10412000 12746000 11856000 10814000 11506000 6 6 2 6 6 6 6 6 6 6 6 5475500 9871900 0 10700000 11465000 14891000 8196500 8932700 8061200 7794900 8389600 5097500 9214600 145250 10920000 10905000 14778000 8480800 9348800 8218400 7659800 8083000 3 3 0 3 3 3 3 3 3 3 3 2316500 4247100 27132 4540800 2241800 1982500 1826700 3418400 3658200 3221100 3545100 2157100 3964100 215170 4573300 2140700 2209700 1931300 3397200 3637400 3154000 3423300 3 3 2 3 3 3 3 3 3 3 3 4108800000 3030000000 1078800000 862 2426 819 4579;4580;4581;4582;4583 5567;5568;5569;5570;5571;5572 5572 6 AHQANQLYPFAISLIESVR Unmodified 2156.1378 0.13783747 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 78.356 78.278 3 2.1373E-12 28519 20211116_3441_TMUAki_TMT10x_S_F3 129.11 113.17 6817700 12197000 39310 11159000 8858700 8967900 8985300 6503500 6865100 7426200 8779600 6348300 11377000 630460 11425000 8499700 9215700 9041900 6764300 7144800 7214800 8410100 3 3 3 3 3 3 3 3 3 3 3 2395600 3930700 1976.6 3579100 2364600 3954000 2943500 2262900 2202900 2301100 2977000 2230600 3666500 200020 3681700 2282000 3966900 2932600 2387300 2301000 2245800 2847800 1 1 1 1 1 1 1 1 1 1 1 4422100 8266200 37333 7580100 6494000 5014000 6041800 4240600 4662200 5125100 5802600 4117700 7710700 430440 7743000 6217700 5248800 6109400 4377100 4843800 4969000 5562300 2 2 2 2 2 2 2 2 2 2 2 1532500000 574300000 958240000 863 1695 820 4584;4585 5573;5574;5575 5574 3 AHQITDESLESTRR Unmodified 1641.8071 0.80706086 65 O00161;O00161-2 SNAP23 Synaptosomal-associated protein 23 yes no 0 0 0 1 By matching By MS/MS 2.5 0.5 1 1 1 1 28.843 28.589 4 1.2154E-09 8517 20211116_3441_TMUAki_TMT10x_S_F3 134.61 108.49 291300 463190 1319.7 302290 303380 498190 287490 269480 258540 215200 342750 271240 431600 25550 322680 290570 490300 291550 283900 267270 212410 328030 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 291300 463190 1319.7 302290 303380 498190 287490 269480 258540 215200 342750 271240 431600 25550 322680 290570 490300 291550 283900 267270 212410 328030 2 2 2 2 2 2 2 2 2 2 2 11508000 3367100 8140800 864 65 821 4586;4587 5576;5577 5577 2 AHQLVMEGYNWCHDR Oxidation (M) 1930.8203 0.82028486 1363 P67775;P62714 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform yes no 0 0 1 0 By MS/MS By MS/MS 5.5 0.5 4 4 4 4 35.907 35.967 3;4 2.9752E-07 7972 20211116_3444_TMUAki_TMT10x_S_F5 118.2 113.31 992600 1679400 32335 2070300 1339100 1264500 1038300 1378300 1451300 1214600 1623700 924410 1568500 112660 2072400 1278100 1340500 1081700 1390700 1464500 1193000 1561000 6 6 5 6 6 6 6 6 6 6 6 333930 541190 1398.8 564090 731470 712660 476950 389300 388030 355110 462050 310890 505080 29938 576070 694760 709580 494340 411110 401270 348230 443430 3 3 2 3 3 3 3 3 3 3 3 658680 1138200 30936 1506200 607610 551860 561380 988990 1063300 859530 1161700 613520 1063500 82725 1496300 583320 630890 587390 979600 1063200 844800 1117600 3 3 3 3 3 3 3 3 3 3 3 470480000 327340000 143130000 865 1363 822 4588;4589;4590;4591;4592;4593;4594;4595 5578;5579;5580;5581;5582;5583;5584 5582 1828 7 AHQLVMEGYNWCHDR Unmodified 1914.8254 0.82537023 1363 P67775;P62714 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform yes no 0 0 0 0 By MS/MS By MS/MS 6 0.816 1 1 1 1 2 40.366 40.608 4 8.8678E-10 9928 20211116_3445_TMUAki_TMT10x_S_F6 131.96 121.17 3389100 5693100 9318.8 6496500 7878900 7118800 4340600 5171300 5073100 4233900 5372200 3155100 5315200 285870 6580100 7461900 7170000 4610600 5328100 5139600 4173700 5173100 3 3 1 3 3 3 3 3 3 3 3 2010300 3499100 0 3886500 6647000 6120900 3346300 3595900 3525800 2996000 3365000 1871300 3266500 176090 3970900 6286800 6041000 3572400 3765500 3573300 2950700 3251100 1 1 0 1 1 1 1 1 1 1 1 1378800 2193900 9318.8 2610000 1231900 997910 994350 1575400 1547300 1238000 2007200 1283800 2048700 109780 2609200 1175000 1129000 1038100 1562500 1566300 1223000 1922100 2 2 1 2 2 2 2 2 2 2 2 512990000 195300000 317680000 866 1363 822 4596;4597;4598 5585;5586;5587 5587 3 AHQVVEDGYEFFAK Unmodified 1638.7678 0.7678218 1333;1334;957 P62140;P36873;P36873-2;P62136;P62136-2;P62136-3 PPP1CB;PPP1CC;PPP1CA Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit no no 0 0 0 0 By MS/MS By MS/MS 4.5 1.38 1 2 3 3 2 1 4 8 58.995 59.035 2;3 6.3804E-30 17209 20211116_3444_TMUAki_TMT10x_S_F5 215.85 175.26 79784000 138660000 528360 154330000 99017000 110050000 85746000 91600000 81741000 85255000 104790000 74286000 129440000 6829700 155680000 94605000 114430000 87546000 93874000 84151000 83526000 100370000 12 12 5 12 12 12 12 12 12 12 12 31972000 53423000 268040 62868000 45409000 67239000 43177000 32615000 28433000 29652000 38979000 29770000 49884000 2962800 63533000 43492000 67451000 43456000 34820000 29945000 29081000 37275000 4 4 2 4 4 4 4 4 4 4 4 47811000 85234000 260320 91467000 53608000 42816000 42570000 58985000 53308000 55604000 65807000 44516000 79555000 3866900 92144000 51113000 46982000 44090000 59055000 54206000 54445000 63095000 8 8 3 8 8 8 8 8 8 8 8 12770000000 6364400000 6405600000 867 1334;957;1333 823 4599;4600;4601;4602;4603;4604;4605;4606;4607;4608;4609;4610 5588;5589;5590;5591;5592;5593;5594;5595;5596;5597;5598;5599;5600;5601 5598 14 AHQVVEDGYEFFAKR Unmodified 1794.8689 0.86893283 1333;1334;957 P62140;P36873;P36873-2;P62136;P62136-2;P62136-3 PPP1CB;PPP1CC;PPP1CA Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit no no 0 0 0 1 By MS/MS By MS/MS 6.17 1.21 1 3 3 3 2 7 5 53.341 53.551 3;4 2.8369E-30 15276 20211116_3445_TMUAki_TMT10x_S_F6 211.51 196.63 52139000 89331000 737560 80619000 76696000 105210000 63265000 84586000 75625000 73293000 75878000 48550000 83322000 5066400 83227000 73228000 105200000 65257000 86704000 76403000 72047000 73189000 16 16 13 16 16 16 16 16 16 16 16 33470000 58289000 277980 50841000 52317000 85619000 46359000 56326000 49833000 48212000 49402000 31163000 54362000 3010300 52912000 50012000 84419000 47443000 58504000 50529000 47421000 47670000 11 11 8 11 11 11 11 11 11 11 11 18669000 31041000 459580 29778000 24379000 19589000 16905000 28260000 25792000 25081000 26476000 17386000 28960000 2056100 30316000 23216000 20779000 17814000 28200000 25874000 24626000 25519000 5 5 5 5 5 5 5 5 5 5 5 9412700000 4851300000 4561400000 868 1334;957;1333 824 4611;4612;4613;4614;4615;4616;4617;4618;4619;4620;4621;4622 5602;5603;5604;5605;5606;5607;5608;5609;5610;5611;5612;5613;5614;5615;5616;5617;5618 5615 17 AHSSMVGVNLPQK Oxidation (M) 1382.6976 0.69763375 473 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 1 0 By MS/MS 2 0 1 1 35.28 35.055 3 2.0331E-06 9507 20211116_3429_TMUAki_TMT10x_P_F2 111.63 93.034 639140 912410 0 1233100 1805100 1470300 844930 927770 1071200 838030 993130 594780 852570 29377 1238900 1704100 1471000 914260 967990 1077100 822160 960460 1 1 0 1 1 1 1 1 1 1 1 639140 912410 0 1233100 1805100 1470300 844930 927770 1071200 838030 993130 594780 852570 29377 1238900 1704100 1471000 914260 967990 1077100 822160 960460 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 85461000 85461000 0 869 473 825 4623 5619 5619 365 1 AHTDFFEAFK Unmodified 1211.5611 0.56112349 1300 P61201;P61201-2 COPS2 COP9 signalosome complex subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 56.838 57.218 3 1.9329E-07 16827 20211116_3445_TMUAki_TMT10x_S_F6 107.95 85.754 22661000 36168000 51907 43469000 41138000 42800000 29466000 23245000 22453000 22987000 27870000 21098000 33776000 1949000 43820000 39139000 43203000 30282000 24613000 23341000 22461000 26718000 5 5 1 5 5 5 5 5 5 5 5 18254000 28874000 51907 35241000 37097000 39222000 25736000 18671000 18043000 18147000 22028000 16995000 26966000 1597500 35562000 35273000 39249000 26461000 20005000 18833000 17745000 21126000 4 4 1 4 4 4 4 4 4 4 4 4406700 7294400 0 8228100 4040800 3577900 3730000 4574100 4410700 4840200 5842800 4103000 6809900 351470 8258500 3866200 3954200 3820800 4608300 4508100 4716200 5592000 1 1 0 1 1 1 1 1 1 1 1 2304800000 1779100000 525620000 870 1300 826 4624;4625;4626;4627;4628 5620;5621;5622;5623;5624;5625 5624 6 AHTLLSPPSANNATFAR Unmodified 1766.9064 0.90638097 1086 P49005 POLD2 DNA polymerase delta subunit 2 yes yes 0 0 0 0 By MS/MS 2 0 1 1 41.561 41.617 3 1.6237E-15 10715 20211116_3440_TMUAki_TMT10x_S_F2 147.83 123.49 295640 478290 278.35 575270 349800 260170 220800 463360 480180 344260 468940 275270 446660 25529 575310 332180 289050 238740 457290 476750 341130 452720 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 295640 478290 278.35 575270 349800 260170 220800 463360 480180 344260 468940 275270 446660 25529 575310 332180 289050 238740 457290 476750 341130 452720 1 1 1 1 1 1 1 1 1 1 1 89156000 0 89156000 871 1086 827 4629 5626 5626 1 AHTMTDDVTFWK Oxidation (M) 1466.65 0.65001485 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 1 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 47.131 47.273 3 6.1299E-06 13514 20211116_3433_TMUAki_TMT10x_P_F5 102.28 58.648 16402000 26300000 407700 33567000 32057000 28548000 21099000 21298000 20138000 18199000 24711000 15275000 24568000 1959100 33656000 30487000 29230000 21945000 21928000 20691000 17902000 23696000 6 6 6 6 6 6 6 6 6 6 6 8924400 13754000 222950 17722000 25820000 23273000 15660000 11097000 10773000 9715500 13303000 8311100 12848000 1184300 17882000 24516000 23093000 16265000 11855000 11263000 9545500 12755000 3 3 3 3 3 3 3 3 3 3 3 7477900 12547000 184750 15845000 6236900 5275300 5438800 10201000 9364800 8483900 11408000 6964000 11720000 774770 15774000 5971400 6136800 5680100 10072000 9427800 8356600 10941000 3 3 3 3 3 3 3 3 3 3 3 1676100000 1323200000 352890000 872 1471 828 4630;4631;4632;4633;4634 5627;5628;5629;5630;5631;5632 5628 1977 6 AHTMTDDVTFWK Unmodified 1450.6551 0.65510023 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 54.44 54.539 3 9.8041E-07 15723 20211116_3445_TMUAki_TMT10x_S_F6 119.27 104.71 4047000 7410500 230600 8457300 3762000 2887800 3217300 4782200 4313200 4042100 5507200 3769900 6918700 546450 8470700 3607400 3328000 3325900 4744400 4382400 3978300 5275600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4047000 7410500 230600 8457300 3762000 2887800 3217300 4782200 4313200 4042100 5507200 3769900 6918700 546450 8470700 3607400 3328000 3325900 4744400 4382400 3978300 5275600 1 1 1 1 1 1 1 1 1 1 1 845570000 462530000 383030000 873 1471 828 4635;4636;4637 5633;5634 5634 2 AHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGR Unmodified 2790.2753 0.27530379 1650 Q13595;Q13595-4;Q13595-3 TRA2A Transformer-2 protein homolog alpha yes no 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 28.809 28.693 5 1.2388E-10 7035 20211116_3429_TMUAki_TMT10x_P_F2 92.231 84.692 40299 70459 2269.5 76056 104580 91553 51848 42593 48145 39638 64585 37539 65766 6356.4 77426 99087 91212 55234 45688 49724 38835 61794 1 1 1 1 1 1 1 1 1 1 1 40299 70459 2269.5 76056 104580 91553 51848 42593 48145 39638 64585 37539 65766 6356.4 77426 99087 91212 55234 45688 49724 38835 61794 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13021000 13021000 0 874 1650 829 4638;4639 5635 5635 1 AHVEGDGVVEGIIR Unmodified 1449.7576 0.75759147 20 A6NHR9;A6NHR9-2 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 43.204 43.066 3 4.8116E-19 11451 20211116_3440_TMUAki_TMT10x_S_F2 164.56 143.44 4330900 6728200 66802 8702500 7446000 6267200 4793300 5772400 5930000 4615600 6849300 4032900 6285500 445330 8702100 7075700 6523700 5035900 5859300 6015700 4555500 6578800 7 7 6 7 7 7 7 7 7 7 7 2286600 3330500 19610 4465400 5726300 4738800 3145600 2846800 2944100 2254900 3602700 2129100 3111900 236410 4479400 5425700 4768200 3319400 2972200 3027300 2226600 3455000 3 3 2 3 3 3 3 3 3 3 3 2044300 3397700 47192 4237100 1719700 1528400 1647700 2925600 2986000 2360600 3246600 1903800 3173600 208920 4222700 1650000 1755500 1716600 2887100 2988400 2328800 3123800 4 4 4 4 4 4 4 4 4 4 4 356700000 217120000 139590000 875 20 830 4640;4641;4642;4643 5636;5637;5638;5639;5640;5641;5642 5640 7 AHVFECNLESSVESIISPK Unmodified 2145.0412 0.041219473 255 O60216 RAD21 Double-strand-break repair protein rad21 homolog yes yes 0 0 0 0 By MS/MS 6 0 1 1 75.693 75.648 3 0.021992 24338 20211116_3445_TMUAki_TMT10x_S_F6 45.347 37.635 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 876 255 831 4644 5643 5643 1 AHVIVMAATNRPNSIDPALR Oxidation (M) 2161.1426 0.14260527 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 1 1 By MS/MS By MS/MS 2.17 0.687 1 3 2 1 5 39.623 39.489 3;4 1.4634E-06 12827 20211116_3441_TMUAki_TMT10x_S_F3 88.487 71.268 4225500 6970900 50738 8149200 5238500 4957400 4124000 5750500 6422300 5458500 6606500 3934500 6509000 382280 8182600 4996100 5265000 4312600 5798000 6439500 5343100 6367400 8 8 3 8 8 8 8 8 8 8 8 823670 1246700 0 1502700 2124600 2047200 1061600 1170100 1283700 919150 1245400 766720 1164300 61780 1523000 2008800 2032300 1139300 1226500 1294800 908030 1202500 1 1 0 1 1 1 1 1 1 1 1 3401900 5724100 50738 6646600 3114000 2910200 3062400 4580400 5138600 4539400 5361200 3167800 5344700 320500 6659600 2987300 3232700 3173300 4571500 5144700 4435100 5164800 7 7 3 7 7 7 7 7 7 7 7 1620400000 934240000 686180000 877 1235 832 4645;4646;4647;4648;4649;4650 5644;5645;5646;5647;5648;5649;5650;5651 5649 1666 8 AHVIVMAATNRPNSIDPALR Unmodified 2145.1477 0.14769065 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 1 By MS/MS By MS/MS 3 0 3 1 2 44.103 43.952 3;4 2.1494E-05 14719 20211116_3441_TMUAki_TMT10x_S_F3 82.765 60.925 752820 1213400 0 1268600 1824800 1836300 1114600 1161000 1043700 1114600 1217800 700900 1132500 71041 1298800 1731400 1820500 1165500 1213100 1071100 1090500 1169300 1 1 0 1 1 1 1 1 1 1 1 752820 1213400 0 1268600 1824800 1836300 1114600 1161000 1043700 1114600 1217800 700900 1132500 71041 1298800 1731400 1820500 1165500 1213100 1071100 1090500 1169300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 271820000 96114000 175710000 878 1235 832 4651;4652;4653 5652;5653 5653 2 AHVIVMAATNRPNSIDPALRR Oxidation (M) 2317.2437 0.2437163 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 1 2 By MS/MS By MS/MS 4.3 0.781 2 3 5 6 4 34.999 34.98 3;4;5 4.0593E-19 8620 20211116_3433_TMUAki_TMT10x_P_F5 148.15 131.73 4763600 7692100 25854 8213900 9362000 8524400 5529700 6149900 5952300 5368400 6733600 4435100 7179500 430690 8347300 8878500 8611600 5822500 6349200 6064700 5275300 6471500 15 15 7 15 15 15 15 15 15 15 15 2893500 4575900 11736 4810600 7616800 6825400 3601600 3847300 3571200 3294700 3926200 2693900 4270700 274620 4921100 7200300 6762100 3862300 4045500 3647000 3240600 3776400 7 7 2 7 7 7 7 7 7 7 7 1870100 3116200 14118 3403300 1745200 1699000 1928000 2302600 2381100 2073700 2807400 1741300 2908800 156070 3426200 1678200 1849500 1960200 2303800 2417700 2034700 2695000 8 8 5 8 8 8 8 8 8 8 8 5273400000 4049400000 1224100000 879 1235 833 4654;4655;4656;4657;4658;4659;4660;4661;4662;4663 5654;5655;5656;5657;5658;5659;5660;5661;5662;5663;5664;5665;5666;5667;5668 5658 1666 15 AHVIVMAATNRPNSIDPALRR Unmodified 2301.2488 0.24880168 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 2 By MS/MS By MS/MS 5 0.577 1 4 1 4 2 38.463 38.531 3;4;5 1.9985E-19 10017 20211116_3433_TMUAki_TMT10x_P_F5 155.49 143.57 4998000 7825500 151520 9295700 11380000 10935000 6771600 6966100 6520500 5457300 7434000 4654500 7307500 611390 9403800 10803000 10950000 7101900 7237800 6676900 5392100 7143000 7 7 6 7 7 7 7 7 7 7 7 4129900 6504800 110590 7770100 10628000 10292000 6120700 6123300 5720000 4721300 6361100 3845900 6074400 502890 7875100 10081000 10235000 6431700 6394100 5859400 4668900 6116400 5 5 4 5 5 5 5 5 5 5 5 868130 1320700 40929 1525600 752680 643550 650930 842880 800500 736010 1072900 808620 1233200 108500 1528700 721620 714490 670220 843720 817490 723230 1026600 2 2 2 2 2 2 2 2 2 2 2 1485200000 1268300000 216920000 880 1235 833 4664;4665;4666;4667;4668;4669 5669;5670;5671;5672;5673;5674;5675;5676 5671 8 AHVLAASVEQATENFLEK Unmodified 1955.9953 0.99525556 922 P35221;P35221-2 CTNNA1 Catenin alpha-1 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 75.947 76.054 3 1.3126E-07 24319 20211116_3434_TMUAki_TMT10x_P_F6 103.61 86.12 2962100 5067200 61911 4692600 3811100 3132800 3422000 2971300 2757100 2984300 3625600 2758500 4726900 315170 4790400 3648200 3284100 3470800 3029500 2864800 2914100 3470600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2962100 5067200 61911 4692600 3811100 3132800 3422000 2971300 2757100 2984300 3625600 2758500 4726900 315170 4790400 3648200 3284100 3470800 3029500 2864800 2914100 3470600 1 1 1 1 1 1 1 1 1 1 1 181400000 0 181400000 881 922 834 4670;4671 5677;5678 5677 2 AHVQEVAQHNLK Unmodified 1372.7211 0.72114638 2107 Q86UP2;Q86UP2-3;Q86UP2-4;Q86UP2-2 KTN1 Kinectin yes no 0 0 0 0 By MS/MS 5 0 1 1 30.097 30.03 4 0.094353 6723 20211116_3433_TMUAki_TMT10x_P_F5 33.192 20.314 949050 1594000 0 1061800 1317100 2246400 1325100 1260700 1284200 1216500 1524000 883600 1485300 76183 1138500 1262600 2193300 1342400 1330300 1316700 1189900 1462700 1 1 0 1 1 1 1 1 1 1 1 949050 1594000 0 1061800 1317100 2246400 1325100 1260700 1284200 1216500 1524000 883600 1485300 76183 1138500 1262600 2193300 1342400 1330300 1316700 1189900 1462700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26928000 26928000 0 882 2107 835 4672 5679 5679 1 AHVVPCFDASK Unmodified 1229.5863 0.58629239 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS 6 0 1 1 37.948 38.111 3 0.00078428 9187 20211116_3445_TMUAki_TMT10x_S_F6 79.693 65.787 416150 657060 10451 783200 405610 356810 403610 477760 503600 439380 605460 387550 613580 44094 783710 389500 392510 412600 478500 511570 430710 580910 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 416150 657060 10451 783200 405610 356810 403610 477760 503600 439380 605460 387550 613580 44094 783710 389500 392510 412600 478500 511570 430710 580910 2 2 2 2 2 2 2 2 2 2 2 6565100 0 6565100 883 755 836 4673 5680;5681 5680 2 AIACLLFGGSR Unmodified 1163.6121 0.61211321 912 P33992 MCM5 DNA replication licensing factor MCM5 yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 72.937 72.866 2 1.2843E-06 22852 20211116_3434_TMUAki_TMT10x_P_F6 134.05 100.93 12159000 22137000 11511 19193000 13287000 23721000 15159000 14537000 11802000 15421000 15504000 11322000 20645000 1029400 19856000 12788000 23680000 15174000 15270000 12285000 15025000 14842000 3 3 1 3 3 3 3 3 3 3 3 9087000 16362000 0 14272000 9670400 20036000 11202000 11030000 8862100 11658000 11396000 8460800 15260000 756300 14794000 9310600 19853000 11210000 11687000 9208000 11360000 10915000 2 2 0 2 2 2 2 2 2 2 2 3072400 5774400 11511 4921000 3616500 3685800 3957000 3507600 2940200 3763000 4108000 2860800 5384900 273070 5062000 3477000 3827000 3964500 3582900 3077100 3664600 3926700 1 1 1 1 1 1 1 1 1 1 1 1079800000 604620000 475190000 884 912 837 4674;4675;4676 5682;5683;5684;5685 5683 4 AIADTGANVVVTGGK Unmodified 1371.7358 0.73579339 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 By MS/MS By MS/MS 5.17 0.799 3 4 5 7 5 48.941 49.095 2;3 3.2444E-72 13151 20211116_3444_TMUAki_TMT10x_S_F5 326.95 256.55 37191000 58249000 258110 64282000 60722000 59059000 43249000 42420000 45761000 39420000 50544000 34629000 54375000 3457000 65074000 57787000 60113000 44861000 43880000 46614000 38624000 48610000 11 11 6 11 11 11 11 11 11 11 11 21013000 31990000 71318 35876000 44359000 44715000 26313000 23790000 25887000 22272000 28305000 19565000 29865000 2049400 36457000 42078000 44537000 27621000 25198000 26440000 21815000 27230000 6 6 3 6 6 6 6 6 6 6 6 16178000 26259000 186790 28406000 16364000 14344000 16936000 18630000 19874000 17148000 22238000 15064000 24511000 1407600 28617000 15709000 15577000 17240000 18681000 20174000 16809000 21379000 5 5 3 5 5 5 5 5 5 5 5 8351700000 3986300000 4365500000 885 1146 838 4677;4678;4679;4680;4681;4682;4683;4684;4685;4686;4687;4688 5686;5687;5688;5689;5690;5691;5692;5693;5694;5695;5696;5697;5698 5696 13 AIAELGIYPAVDPLDSTSR Unmodified 1987.0262 0.026221336 518 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4.93 1.55 3 3 4 7 7 5 11 18 66.282 66.289 2;3 1.5431E-70 26155 20211116_3433_TMUAki_TMT10x_P_F5 284.24 251.16 64871000 110470000 475080 96841000 72786000 101520000 77289000 65112000 65513000 70544000 77194000 60401000 103030000 4642000 99826000 69900000 102320000 77797000 68202000 67578000 68673000 74104000 25 25 10 25 25 25 25 25 25 25 25 37188000 61810000 345070 54829000 34514000 68753000 43351000 36625000 36325000 39143000 43227000 34626000 57650000 2746200 56636000 33317000 68460000 43293000 38935000 37506000 38125000 41486000 14 14 6 14 14 14 14 14 14 14 14 27683000 48659000 130010 42012000 38271000 32769000 33938000 28487000 29188000 31401000 33967000 25775000 45380000 1895800 43191000 36583000 33857000 34504000 29267000 30071000 30548000 32619000 11 11 4 11 11 11 11 11 11 11 11 33345000000 17727000000 15618000000 886 518 839 4689;4690;4691;4692;4693;4694;4695;4696;4697;4698;4699;4700;4701;4702;4703;4704;4705;4706;4707;4708;4709;4710;4711;4712;4713;4714;4715;4716;4717 5699;5700;5701;5702;5703;5704;5705;5706;5707;5708;5709;5710;5711;5712;5713;5714;5715;5716;5717;5718;5719;5720;5721;5722;5723;5724;5725;5726;5727;5728;5729;5730;5731;5732 5708 34 AIAFTQYPQYSCSTTGSSLNAIYR Unmodified 2698.2697 0.26971586 775 P22830;P22830-2 FECH Ferrochelatase, mitochondrial yes no 0 0 0 0 By MS/MS 3 0 1 1 69.988 69.546 3 5.8997E-17 25138 20211116_3441_TMUAki_TMT10x_S_F3 132.65 121.02 732910 1485500 25541 1246000 988340 973280 1057000 952950 898750 1129400 1174300 682600 1385200 88144 1284000 950940 1007900 1063600 975200 931020 1095700 1124300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 732910 1485500 25541 1246000 988340 973280 1057000 952950 898750 1129400 1174300 682600 1385200 88144 1284000 950940 1007900 1063600 975200 931020 1095700 1124300 1 1 1 1 1 1 1 1 1 1 1 350950000 0 350950000 887 775 840 4718 5733 5733 1 AIAGVINQPYYNYEAGPDAVLGR Unmodified 2450.223 0.22302366 449 O95861;O95861-4;O95861-2;O95861-3 BPNT1 3'(2'),5'-bisphosphate nucleotidase 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 74.701 74.839 3 1.533E-21 26091 20211116_3446_TMUAki_TMT10x_S_F7 157.85 141.43 2681700 4527600 156350 4427200 3494400 2904700 3224500 2804200 2571100 2968600 3231200 2498100 4224400 379430 4500800 3353300 3050800 3264600 2861100 2667600 2892500 3096500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2681700 4527600 156350 4427200 3494400 2904700 3224500 2804200 2571100 2968600 3231200 2498100 4224400 379430 4500800 3353300 3050800 3264600 2861100 2667600 2892500 3096500 2 2 2 2 2 2 2 2 2 2 2 940310000 0 940310000 888 449 841 4719;4720 5734;5735;5736 5735 3 AIAHYEQSADYYK Unmodified 1557.71 0.70997257 1230 P54920;Q9H115;Q9H115-3;Q9H115-2 NAPA;NAPB Alpha-soluble NSF attachment protein;Beta-soluble NSF attachment protein yes no 0 0 0 0 By MS/MS 3 0 1 1 27.222 26.929 3 0.10118 7846 20211116_3441_TMUAki_TMT10x_S_F3 26.711 17.615 45718 106610 0 70989 50276 105960 73302 148860 178610 131780 99649 42559 99348 2701 75460 48711 106750 76410 148680 174300 129410 98572 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 45718 106610 0 70989 50276 105960 73302 148860 178610 131780 99649 42559 99348 2701 75460 48711 106750 76410 148680 174300 129410 98572 1 1 0 1 1 1 1 1 1 1 1 5848700 0 5848700 889 1230 842 4721 5737 5737 1 AIAINTFLPK Unmodified 1086.6437 0.64373091 2349 Q92615 LARP4B La-related protein 4B yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 70.397 70.066 2 6.2388E-06 25331 20211116_3441_TMUAki_TMT10x_S_F3 140.75 93.096 17122000 29092000 358420 26803000 19932000 24773000 20264000 18541000 17050000 17717000 22214000 15945000 27138000 1792900 27475000 19141000 25222000 20438000 19141000 17669000 17337000 21269000 4 4 4 4 4 4 4 4 4 4 4 8669400 14399000 223640 13455000 10268000 16655000 11291000 9634800 8960100 9343000 11248000 8073800 13432000 949570 13841000 9885100 16612000 11327000 10142000 9298600 9136900 10780000 2 2 2 2 2 2 2 2 2 2 2 8452500 14693000 134780 13348000 9663200 8117900 8973100 8906500 8089900 8374100 10966000 7871200 13705000 843340 13634000 9256400 8610300 9110600 8999800 8370800 8200500 10489000 2 2 2 2 2 2 2 2 2 2 2 579440000 274330000 305100000 890 2349 843 4722;4723 5738;5739;5740;5741 5740 4 AIALQPENPMAHFLLGR Oxidation (M) 1892.9931 0.99308749 2568 Q96TC7;Q96TC7-2 RMDN3 Regulator of microtubule dynamics protein 3 yes no 0 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 59.842 59.695 3 0.00030956 17950 20211116_3428_TMUAki_TMT10x_P_F1 69.331 57.354 9459800 15832000 184540 15071000 11282000 13243000 11821000 12604000 11412000 11502000 12946000 8809400 14770000 981790 15401000 10842000 13590000 11949000 12814000 11682000 11279000 12441000 3 3 3 3 3 3 3 3 3 3 3 3065400 5091600 52402 4808900 3690100 6594600 4250500 4327500 3956500 3816600 4087200 2854600 4749900 311730 4952500 3555500 6557100 4273100 4499000 4042600 3748500 3938700 1 1 1 1 1 1 1 1 1 1 1 6394400 10740000 132140 10262000 7591600 6648600 7570000 8276700 7456000 7685900 8858600 5954800 10020000 670060 10448000 7286700 7032600 7676200 8315400 7639900 7530800 8502100 2 2 2 2 2 2 2 2 2 2 2 1262900000 546030000 716840000 891 2568 844 4724;4725 5742;5743;5744 5742 2798 3 AIALQPENPMAHFLLGR Unmodified 1876.9982 0.99817287 2568 Q96TC7;Q96TC7-2 RMDN3 Regulator of microtubule dynamics protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 76.536 76.426 3 1.1177E-07 27827 20211116_3441_TMUAki_TMT10x_S_F3 106.6 91.63 9824400 15276000 94576 16008000 11440000 13969000 12482000 8602500 7472700 9126100 11667000 9148200 14257000 925280 16249000 11001000 14236000 12452000 9032900 7970200 8891500 11125000 2 2 2 2 2 2 2 2 2 2 2 6111500 8967200 22846 9337700 6424800 10139000 7771300 5381900 4652500 5863200 7237700 5690600 8368800 532370 9511800 6195600 10172000 7715800 5726400 4961300 5706500 6901900 1 1 1 1 1 1 1 1 1 1 1 3712800 6308800 71730 6670700 5015200 3830500 4710900 3220600 2820200 3262900 4429700 3457600 5888100 392910 6737200 4805500 4063800 4735900 3306500 3008900 3185000 4223300 1 1 1 1 1 1 1 1 1 1 1 1149800000 800330000 349480000 892 2568 844 4726;4727;4728 5745;5746 5746 2 AIANECQANFISIK Unmodified 1577.7872 0.78717704 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 By MS/MS By MS/MS 6.64 0.881 1 4 4 2 6 5 59.098 59.379 2;3 2.6602E-43 19623 20211116_3446_TMUAki_TMT10x_S_F7 269.44 236.35 127640000 217920000 1408300 239920000 157080000 209870000 144320000 143580000 126790000 138720000 164790000 118850000 203420000 11637000 242750000 150330000 214160000 146520000 149190000 131100000 135680000 157790000 11 11 6 11 11 11 11 11 11 11 11 80421000 127260000 1004800 137260000 114600000 162020000 101080000 82571000 68784000 80900000 95557000 74883000 118790000 7528500 139690000 109570000 161740000 102240000 87912000 72340000 79080000 91351000 7 7 3 7 7 7 7 7 7 7 7 47222000 90654000 403500 102660000 42474000 47853000 43238000 61013000 58005000 57817000 69230000 43970000 84634000 4108700 103060000 40762000 52426000 44276000 61274000 58763000 56599000 66437000 4 4 3 4 4 4 4 4 4 4 4 15777000000 8863400000 6913200000 893 1235 845 4729;4730;4731;4732;4733;4734;4735;4736;4737;4738;4739 5747;5748;5749;5750;5751;5752;5753;5754;5755;5756;5757;5758 5757 12 AIAVLTSGGDAQGMNAAVR Oxidation (M) 1816.9101 0.91014572 552 P08237;P08237-3;P08237-2 PFKM ATP-dependent 6-phosphofructokinase, muscle type yes no 0 0 1 0 By MS/MS 6.5 0.5 1 1 2 48.321 48.478 3 9.5022E-05 15324 20211116_3446_TMUAki_TMT10x_S_F7 69.081 55.402 1100800 2320400 35462 2352700 1253300 1247300 1030600 1730100 1745000 1598400 1732300 1025200 2165300 126450 2381400 1198300 1349700 1079100 1730700 1743500 1566500 1671500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1100800 2320400 35462 2352700 1253300 1247300 1030600 1730100 1745000 1598400 1732300 1025200 2165300 126450 2381400 1198300 1349700 1079100 1730700 1743500 1566500 1671500 1 1 1 1 1 1 1 1 1 1 1 164890000 0 164890000 894 552 846 4740;4741 5759;5760 5760 503 2 AIAYLFPSGLFEK Unmodified 1454.781 0.78095267 1444 P82933 MRPS9 28S ribosomal protein S9, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 80.358 80.308 3 0.0001576 29361 20211116_3441_TMUAki_TMT10x_S_F3 84.352 52.289 5048200 8329700 205470 8730500 5270200 6007900 6182200 2863600 2565200 3445900 4978600 4701900 7774000 613130 8837600 5088700 6217800 6111200 3087600 2853600 3341400 4728000 2 2 2 2 2 2 2 2 2 2 2 2151900 3458400 89828 3609900 1987300 3039600 2240400 1528700 1236100 1679100 2245400 2004300 3227600 259820 3663500 1917300 3097800 2228200 1635000 1337300 1633700 2134800 1 1 1 1 1 1 1 1 1 1 1 2896200 4871200 115640 5120600 3282900 2968300 3941800 1334900 1329100 1766700 2733200 2697500 4546300 353310 5174100 3171400 3120000 3883000 1452600 1516300 1707700 2593200 1 1 1 1 1 1 1 1 1 1 1 664630000 216510000 448120000 895 1444 847 4742;4743 5761;5762 5762 2 AICDHVR Unmodified 869.41777 0.41777049 988 P40925;P40925-3;P40925-2 MDH1 Malate dehydrogenase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 3.25 1.09 1 2 1 2 2 25.981 25.759 2;3 0.00066531 7684 20211116_3441_TMUAki_TMT10x_S_F3 133.47 114.74 402670 568540 1978.5 501020 411770 467660 376960 338960 332320 316070 438060 374880 530250 27994 515390 393590 475590 382800 350440 343790 309630 419310 4 4 2 4 4 4 4 4 4 4 4 233290 287070 0 250850 206350 291320 173080 192560 178290 156270 225200 217160 267740 11603 259070 196540 292060 177470 199680 182810 154110 215790 2 2 0 2 2 2 2 2 2 2 2 169370 281460 1978.5 250170 205420 176340 203870 146400 154040 159800 212860 157720 262520 16391 256320 197050 183530 205330 150760 160970 155520 203510 2 2 2 2 2 2 2 2 2 2 2 14380000 3133900 11246000 896 988 848 4744;4745;4746;4747 5763;5764;5765;5766 5765 4 AIDALREFNEEGALSVLQQFK Unmodified 2377.2278 0.22777469 211 O43390;O43390-2;O43390-3 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 1 By MS/MS By MS/MS 6.5 1.38 1 2 1 2 4 2 79.963 79.965 3 3.209E-55 25717 20211116_3434_TMUAki_TMT10x_P_F6 224.97 208.29 31777000 49253000 644880 46687000 31087000 54760000 34594000 33378000 29905000 35714000 37942000 29592000 45949000 3225700 47930000 29934000 54808000 34762000 35085000 30914000 34784000 36352000 6 6 5 6 6 6 6 6 6 6 6 24739000 38405000 498390 35788000 21501000 46460000 25071000 26772000 22944000 27930000 29288000 23038000 35826000 2470000 36854000 20736000 46230000 25178000 28248000 23659000 27230000 28057000 4 4 3 4 4 4 4 4 4 4 4 7038100 10848000 146490 10899000 9585300 8299900 9523500 6606100 6961600 7784600 8654000 6554300 10122000 755710 11076000 9198200 8577600 9584100 6837400 7254400 7554300 8295800 2 2 2 2 2 2 2 2 2 2 2 4728700000 3720500000 1008200000 897 211 849 4748;4749;4750;4751;4752;4753 5767;5768;5769;5770;5771;5772 5768 6 AIDLFTDAIK Unmodified 1105.6019 0.60192568 1137 P50502;Q8IZP2;Q8NFI4 ST13;ST13P4;ST13P5 Hsc70-interacting protein;Putative protein FAM10A4;Putative protein FAM10A5 yes no 0 0 0 0 By MS/MS By MS/MS 5.26 1.57 1 3 3 5 5 5 1 14 9 73.024 73.014 2;3 9.1819E-19 24544 20211116_3445_TMUAki_TMT10x_S_F6 244.68 192.69 140910000 234340000 1111200 234720000 176660000 223530000 163620000 177960000 173660000 167720000 183590000 131210000 218670000 12749000 239260000 169100000 227380000 166960000 182930000 176580000 164220000 176800000 20 20 12 20 20 20 20 20 20 20 20 74482000 118790000 360840 118860000 95812000 152580000 93775000 91030000 88308000 86900000 92811000 69352000 110840000 6616000 121760000 91827000 151970000 95057000 95536000 90238000 85042000 89392000 11 11 6 11 11 11 11 11 11 11 11 66428000 115560000 750380 115860000 80849000 70952000 69849000 86932000 85352000 80816000 90779000 61855000 107830000 6133400 117500000 77273000 75410000 71906000 87397000 86346000 79181000 87403000 9 9 6 9 9 9 9 9 9 9 9 33223000000 17850000000 15373000000 898 1137 850 4754;4755;4756;4757;4758;4759;4760;4761;4762;4763;4764;4765;4766;4767;4768;4769;4770;4771;4772;4773;4774;4775;4776 5773;5774;5775;5776;5777;5778;5779;5780;5781;5782;5783;5784;5785;5786;5787;5788;5789;5790;5791;5792;5793;5794;5795;5796 5793 24 AIDTTQLFSLPK Unmodified 1332.7289 0.7289171 1865 Q16822;Q16822-3 PCK2 Phosphoenolpyruvate carboxykinase [GTP], mitochondrial yes no 0 0 0 0 By MS/MS 8 0 1 1 75.537 75.551 3 0.00016989 24658 20211116_3436_TMUAki_TMT10x_P_F8 86.772 63.887 1093400 1709600 0 1518100 1229400 2254100 1324300 1108700 1226500 1232600 1375700 1017900 1594500 79830 1573300 1180400 2225200 1335300 1188700 1257300 1198700 1322400 1 1 0 1 1 1 1 1 1 1 1 1093400 1709600 0 1518100 1229400 2254100 1324300 1108700 1226500 1232600 1375700 1017900 1594500 79830 1573300 1180400 2225200 1335300 1188700 1257300 1198700 1322400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 370560000 370560000 0 899 1865 851 4777 5797 5797 1 AIEALHGHELRPGR Unmodified 1554.8379 0.83790748 2534 Q96PK6;Q96PK6-2;Q96PK6-3;Q96PK6-4 RBM14 RNA-binding protein 14 no no 0 0 0 1 By MS/MS By matching 5.17 0.687 1 3 2 5 1 31.347 31.345 3;4;5 6.6865E-19 7192 20211116_3433_TMUAki_TMT10x_P_F5 164.93 141.56 1968900 3065900 27601 2977300 3633200 3173200 2291600 1656100 1866300 1715200 2361900 1833300 2860400 197560 3046600 3450700 3186500 2381400 1762100 1934800 1672700 2263100 4 4 2 4 4 4 4 4 4 4 4 1968900 3065900 27601 2977300 3633200 3173200 2291600 1656100 1866300 1715200 2361900 1833300 2860400 197560 3046600 3450700 3186500 2381400 1762100 1934800 1672700 2263100 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 255500000 255220000 282250 900 2534 852 4778;4779;4780;4781;4782;4783 5798;5799;5800;5801 5799 4 AIEDEGGNPDEIEITSEGNK Unmodified 2115.9444 0.94440178 1804 Q15424;Q15424-3;Q15424-2;Q15424-4 SAFB Scaffold attachment factor B1 yes no 0 0 0 0 By MS/MS 1 0 1 1 52.908 52.908 3 9.2984E-05 15233 20211116_3428_TMUAki_TMT10x_P_F1 67.057 59.465 1878400 2683200 5778.9 3066000 3610600 4171400 2307400 2458900 2358800 2127000 2271100 1749000 2505200 185380 3117300 3429600 4142900 2410200 2576600 2394300 2091000 2193600 1 1 1 1 1 1 1 1 1 1 1 1878400 2683200 5778.9 3066000 3610600 4171400 2307400 2458900 2358800 2127000 2271100 1749000 2505200 185380 3117300 3429600 4142900 2410200 2576600 2394300 2091000 2193600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 273420000 273420000 0 901 1804 853 4784 5802 5802 1 AIEDEGGNPDEIEITSEGNKK Unmodified 2244.0394 0.039364797 1804 Q15424;Q15424-3;Q15424-2;Q15424-4 SAFB Scaffold attachment factor B1 yes no 0 0 0 1 By MS/MS By MS/MS 2.17 0.898 2 1 3 4 2 48.029 47.909 3;4 2.9668E-55 15186 20211116_3430_TMUAki_TMT10x_P_F3 226.74 216.99 7525400 11467000 138630 15403000 18808000 17336000 9817700 13273000 15782000 10641000 12706000 7007300 10714000 837340 15464000 17812000 17450000 10613000 13621000 15686000 10501000 12352000 6 6 2 6 6 6 6 6 6 6 6 4460700 6602000 0 9103900 16155000 15030000 7689900 8672600 10079000 6324100 7915100 4152800 6169700 459810 9199300 15273000 14803000 8316800 9068300 10072000 6273200 7702400 4 4 0 4 4 4 4 4 4 4 4 3064700 4864700 138630 6298800 2653300 2306300 2127800 4600300 5703300 4316500 4790900 2854600 4544700 377520 6264900 2539300 2647300 2296500 4553000 5613300 4227400 4649900 2 2 2 2 2 2 2 2 2 2 2 1127000000 539920000 587080000 902 1804 854 4785;4786;4787;4788;4789;4790 5803;5804;5805;5806;5807;5808;5809;5810 5808 8 AIEEGIPAFTCEEYVK Unmodified 1854.871 0.87096625 3241 Q9Y2L1;Q9Y2L1-2 DIS3 Exosome complex exonuclease RRP44 yes no 0 0 0 0 By MS/MS 2 0 1 1 69.883 69.699 3 0.012855 22336 20211116_3440_TMUAki_TMT10x_S_F2 48.899 36.733 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 903 3241 855 4791 5811 5811 1 AIEEGTLEEIEEEVR Unmodified 1744.8367 0.83668923 1154 P51532-5;P51532-2;P51532-3;P51532-4;P51532 SMARCA4 Transcription activator BRG1 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 4 2 2 75.058 75.019 2;3 1.4463E-43 26162 20211116_3439_TMUAki_TMT10x_S_F1 267.43 204.14 19094000 29674000 76439 27440000 19442000 26993000 20926000 17039000 17869000 18011000 21907000 17776000 27681000 1309700 28144000 18661000 27303000 21054000 17856000 18456000 17550000 21008000 6 6 2 6 6 6 6 6 6 6 6 10671000 16524000 63959 14929000 10015000 18298000 11285000 9325900 10206000 10210000 12191000 9934200 15413000 663780 15393000 9621400 18231000 11347000 9961200 10501000 9935300 11699000 3 3 1 3 3 3 3 3 3 3 3 8422800 13150000 12480 12510000 9426600 8695500 9641400 7713300 7663200 7800900 9715500 7841900 12268000 645890 12751000 9039800 9071600 9707200 7894500 7955400 7615100 9308700 3 3 1 3 3 3 3 3 3 3 3 10004000000 6057700000 3946300000 904 1154 856 4792;4793;4794;4795 5812;5813;5814;5815;5816;5817 5815 6 AIEEGTLEEIEEEVRQK Unmodified 2000.9902 0.99022976 1154 P51532-5;P51532-2;P51532-3;P51532-4;P51532 SMARCA4 Transcription activator BRG1 yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 74.035 73.99 3 1.7234E-93 23744 20211116_3428_TMUAki_TMT10x_P_F1 338.89 297.47 20308000 32202000 86737 30110000 23072000 30236000 22611000 20109000 19377000 19741000 25351000 18909000 30040000 1759200 30867000 22113000 30567000 22859000 20945000 20066000 19295000 24270000 4 4 2 4 4 4 4 4 4 4 4 12872000 20016000 86737 18949000 12883000 23145000 15297000 12608000 12280000 12528000 16548000 11986000 18673000 1131100 19469000 12417000 23083000 15297000 13348000 12777000 12239000 15831000 3 3 2 3 3 3 3 3 3 3 3 7435300 12186000 0 11161000 10189000 7090800 7313300 7501300 7096900 7212800 8803000 6922800 11367000 628100 11398000 9695900 7484000 7561900 7597400 7289900 7056300 8439200 1 1 0 1 1 1 1 1 1 1 1 2577500000 1425000000 1152400000 905 1154 857 4796;4797;4798 5818;5819;5820;5821;5822 5819 5 AIEINPDSAQPYK Unmodified 1444.7198 0.71980898 1137 P50502;Q8IZP2;Q8NFI4 ST13;ST13P4;ST13P5 Hsc70-interacting protein;Putative protein FAM10A4;Putative protein FAM10A5 yes no 0 0 0 0 By MS/MS By MS/MS 4.45 0.988 2 4 3 2 6 5 52.351 52.493 2;3 1.9777E-25 14560 20211116_3444_TMUAki_TMT10x_S_F5 231.07 201.26 29837000 45897000 482420 66598000 56309000 48869000 31681000 44456000 50769000 36411000 47286000 27785000 42904000 3249800 66214000 53399000 50779000 34014000 45182000 50690000 35892000 45723000 10 10 7 10 10 10 10 10 10 10 10 13514000 20034000 305430 29598000 43656000 37574000 20435000 19930000 22033000 16103000 21223000 12585000 18730000 1821400 29639000 41293000 37389000 21992000 21039000 22316000 15885000 20498000 4 4 3 4 4 4 4 4 4 4 4 16323000 25863000 176990 37000000 12653000 11295000 11245000 24526000 28736000 20308000 26063000 15199000 24174000 1428400 36575000 12106000 13390000 12021000 24143000 28373000 20008000 25225000 6 6 4 6 6 6 6 6 6 6 6 5624700000 3491000000 2133700000 906 1137 858 4799;4800;4801;4802;4803;4804;4805;4806;4807;4808;4809 5823;5824;5825;5826;5827;5828;5829;5830;5831;5832;5833;5834 5833 12 AIEIYTDMGR Oxidation (M) 1183.5543 0.55432356 1230 P54920 NAPA Alpha-soluble NSF attachment protein yes yes 0 0 1 0 By MS/MS 3 0 1 1 44.677 44.711 2 0.00028953 13822 20211116_3430_TMUAki_TMT10x_P_F3 88.136 69.597 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 907 1230 859 4810 5835 5835 1653 1 AIELATTLDESLTNR Unmodified 1645.8523 0.85227972 2714 Q9BXJ9 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 74.985 74.851 2;3 6.4955E-31 25666 20211116_3429_TMUAki_TMT10x_P_F2 218.06 181.37 2574800 4736200 54996 3751000 2898600 4819400 3297500 3565100 3292600 3399000 3577600 2397700 4415700 254750 3912200 2791700 4815600 3323800 3683100 3360000 3326500 3442300 2 2 1 2 2 2 2 2 2 2 2 1693200 2960500 0 2251800 1813100 3720600 2129700 2438300 2193100 2328300 2411300 1576500 2759800 127550 2369200 1745500 3670900 2145600 2540500 2236100 2278400 2319300 1 1 0 1 1 1 1 1 1 1 1 881560 1775700 54996 1499200 1085500 1098800 1167800 1126800 1099500 1070700 1166300 821230 1655900 127200 1543000 1046200 1144700 1178100 1142600 1123900 1048000 1123000 1 1 1 1 1 1 1 1 1 1 1 1181900000 492160000 689780000 908 2714 860 4811;4812;4813;4814 5836;5837;5838 5836 3 AIELLQEFSDQHPENAAEIK Unmodified 2281.1226 0.12264092 381 O76094;O76094-2 SRP72 Signal recognition particle subunit SRP72 yes no 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 74.946 74.812 3 3.8995E-18 25643 20211116_3429_TMUAki_TMT10x_P_F2 142.88 127.45 12182000 19816000 79915 19926000 13098000 19037000 13537000 11974000 11032000 12967000 15467000 11343000 18490000 1069500 20307000 12573000 19290000 13631000 12561000 11490000 12623000 14783000 4 4 2 4 4 4 4 4 4 4 4 6057100 9201200 26966 9187400 5696400 11861000 6865700 5853700 5328300 6549300 7462800 5639900 8585600 517120 9413600 5492700 11783000 6855400 6275700 5563700 6367700 7133000 2 2 1 2 2 2 2 2 2 2 2 6124800 10614000 52949 10739000 7401600 7176500 6671300 6120400 5703900 6417400 8004300 5703000 9904900 552400 10893000 7080300 7506900 6775200 6285000 5926700 6255300 7650200 2 2 1 2 2 2 2 2 2 2 2 1720000000 746600000 973350000 909 381 861 4815;4816;4817 5839;5840;5841;5842 5839 4 AIELNPANAVYFCNR Unmodified 1750.8461 0.8460889 242 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha yes yes 0 0 0 0 By MS/MS By MS/MS 7.8 0.4 1 4 3 2 65.314 65.484 2;3 7.2802E-85 20405 20211116_3436_TMUAki_TMT10x_P_F8 335.78 295.78 28389000 48132000 112030 47196000 39704000 47970000 34911000 32692000 30984000 31541000 35461000 26433000 44909000 2179600 48226000 37949000 48478000 35541000 33976000 31852000 30852000 34069000 6 6 2 6 6 6 6 6 6 6 6 19390000 32179000 0 32129000 28614000 38709000 25076000 21960000 21372000 21430000 24282000 18053000 30026000 1532100 32879000 27340000 38652000 25506000 23157000 22007000 20952000 23334000 3 3 0 3 3 3 3 3 3 3 3 8999600 15954000 112030 15067000 11090000 9261300 9835200 10732000 9612300 10111000 11179000 8380400 14883000 647440 15346000 10609000 9825900 10035000 10819000 9844200 9900800 10735000 3 3 2 3 3 3 3 3 3 3 3 5090200000 3110000000 1980200000 910 242 862 4818;4819;4820;4821;4822 5843;5844;5845;5846;5847;5848 5844 6 AIELQPHFPDAYCNLANALK Unmodified 2284.131 0.13103753 180 O15294;O15294-3;O15294-2 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes no 0 0 0 0 By MS/MS 8 0 1 1 76.164 76.176 3 6.0693E-09 24826 20211116_3436_TMUAki_TMT10x_P_F8 103.85 88.923 6895800 12933000 0 11828000 7434200 14784000 8626900 7632400 7249000 8127100 8632000 6419700 12064000 458070 12189000 7150300 14718000 8645600 8135900 7484000 7917000 8284100 2 2 0 2 2 2 2 2 2 2 2 6895800 12933000 0 11828000 7434200 14784000 8626900 7632400 7249000 8127100 8632000 6419700 12064000 458070 12189000 7150300 14718000 8645600 8135900 7484000 7917000 8284100 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1104600000 1104600000 0 911 180 863 4823 5849;5850 5849 2 AIENIDTLTNLESLFLGK Unmodified 1990.0623 0.062272491 1807 Q15435;Q15435-2;Q15435-5;Q15435-4;Q15435-3 PPP1R7 Protein phosphatase 1 regulatory subunit 7 yes no 0 0 0 0 By MS/MS By MS/MS 4.7 1.95 2 1 2 1 2 1 1 5 5 82.669 82.669 3 3.3904E-18 28924 20211116_3435_TMUAki_TMT10x_P_F7 158.15 140.23 11036000 17123000 98261 16265000 11574000 17466000 12975000 11191000 11579000 11631000 13793000 10276000 15974000 831750 16671000 11136000 17578000 13045000 11709000 11919000 11341000 13237000 11 11 8 11 11 11 11 11 11 11 11 7322600 10969000 83565 10485000 6547000 12963000 7916100 7127800 7277200 7691400 8866200 6818300 10233000 626250 10767000 6313900 12922000 7938300 7558400 7487600 7488600 8503700 7 7 5 7 7 7 7 7 7 7 7 3713700 6154200 14696 5780000 5027000 4502800 5059000 4063700 4301800 3939500 4927100 3457900 5741100 205500 5903900 4821900 4656100 5106400 4150200 4431600 3852600 4733700 4 4 3 4 4 4 4 4 4 4 4 1389700000 710020000 679680000 912 1807 864 4824;4825;4826;4827;4828;4829;4830;4831;4832;4833 5851;5852;5853;5854;5855;5856;5857;5858;5859;5860;5861 5855 11 AIEPNDYTGKVSEEIEDIIK Unmodified 2262.1267 0.12672324 317 O75223;O75223-3 GGCT Gamma-glutamylcyclotransferase yes no 0 0 0 1 By MS/MS 2 0 1 1 78.167 78.117 3 0.017718 27012 20211116_3429_TMUAki_TMT10x_P_F2 43.12 23.3 2834800 4741700 25699 3791700 2935600 6122800 3835300 3423400 3345800 3093800 3823100 2639600 4421000 260380 3970100 2838900 6033000 3828100 3607100 3442100 3035200 3673200 1 1 1 1 1 1 1 1 1 1 1 2834800 4741700 25699 3791700 2935600 6122800 3835300 3423400 3345800 3093800 3823100 2639600 4421000 260380 3970100 2838900 6033000 3828100 3607100 3442100 3035200 3673200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 699700000 699700000 0 913 317 865 4834 5862 5862 1 AIEPPPLDAVIEAEHTLR Unmodified 1970.0473 0.047291129 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 By MS/MS By MS/MS 3.15 1.51 2 3 3 2 2 1 5 8 73.396 73.313 3 1.7936E-63 23869 20211116_3431_TMUAki_TMT10x_P_F4 264.16 243.94 32948000 57190000 1174700 54435000 40119000 51114000 41961000 38710000 36275000 38440000 44285000 30686000 53354000 3873100 55677000 38582000 51998000 42291000 39976000 37437000 37554000 42473000 20 20 16 20 20 20 20 20 20 20 20 13079000 21384000 409290 21242000 13655000 27024000 16949000 15984000 15547000 16007000 17659000 12181000 19953000 1465800 21767000 13200000 26926000 16976000 16810000 15953000 15632000 16969000 8 8 6 8 8 8 8 8 8 8 8 19869000 35806000 765450 33193000 26463000 24090000 25013000 22725000 20728000 22434000 26627000 18505000 33401000 2407300 33911000 25381000 25072000 25315000 23166000 21484000 21922000 25503000 12 12 10 12 12 12 12 12 12 12 12 26164000000 13730000000 12433000000 914 1546 866 4835;4836;4837;4838;4839;4840;4841;4842;4843;4844;4845;4846;4847 5863;5864;5865;5866;5867;5868;5869;5870;5871;5872;5873;5874;5875;5876;5877;5878;5879;5880;5881;5882;5883;5884 5868 22 AIEPPPLDAVIEAEHTLRELDALDANDELTPLGR Unmodified 3692.8897 0.88973444 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 1 By MS/MS 2 0 1 1 81.163 81.148 4 3.3119E-49 26883 20211116_3440_TMUAki_TMT10x_S_F2 195.89 180.72 1580400 2412100 0 1985500 2046900 1518400 1876200 1296700 1028400 1428700 1878700 1471400 2249200 119730 2048700 1957200 1570600 1885800 1333500 1113500 1390000 1786000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1580400 2412100 0 1985500 2046900 1518400 1876200 1296700 1028400 1428700 1878700 1471400 2249200 119730 2048700 1957200 1570600 1885800 1333500 1113500 1390000 1786000 1 1 0 1 1 1 1 1 1 1 1 1887600000 0 1887600000 915 1546 867 4848 5885 5885 1 AIEQADLLQEEDESPR Unmodified 1841.8643 0.86430096 1327 P61966 AP1S1 AP-1 complex subunit sigma-1A yes yes 0 0 0 0 By MS/MS 1 0 1 1 52.619 52.338 3 6.5126E-11 17036 20211116_3439_TMUAki_TMT10x_S_F1 133.23 122.95 898770 1486700 6800.6 1476200 826990 765590 715090 1337800 1249200 1262600 1285200 836890 1387300 79847 1496100 790560 836620 747730 1329100 1248700 1236200 1238600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 898770 1486700 6800.6 1476200 826990 765590 715090 1337800 1249200 1262600 1285200 836890 1387300 79847 1496100 790560 836620 747730 1329100 1248700 1236200 1238600 1 1 1 1 1 1 1 1 1 1 1 139010000 0 139010000 916 1327 868 4849 5886 5886 1 AIETFSGKVELQGK Unmodified 1505.809 0.80895834 3032 Q9NZI8;Q9NZI8-2 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 7 0.953 1 2 4 4 6 5 54.398 54.676 3;4 3.066E-19 16034 20211116_3436_TMUAki_TMT10x_P_F8 173.03 138.85 99124000 155040000 1570400 152550000 144450000 141900000 106070000 140560000 122900000 120640000 130600000 92306000 144660000 10256000 155650000 137630000 145180000 110120000 142380000 124570000 118650000 125750000 13 13 11 13 13 13 13 13 13 13 13 42920000 67093000 784810 66283000 60595000 89953000 51528000 61856000 55116000 52271000 56446000 39969000 62602000 4529100 68031000 57920000 89546000 52852000 64022000 55961000 51445000 54410000 6 6 5 6 6 6 6 6 6 6 6 56204000 87942000 785600 86270000 83853000 51946000 54539000 78703000 67786000 68371000 74152000 52337000 82053000 5726900 87614000 79709000 55638000 57264000 78360000 68607000 67200000 71335000 7 7 6 7 7 7 7 7 7 7 7 12896000000 6554000000 6342400000 917 3032 869 4850;4851;4852;4853;4854;4855;4856;4857;4858;4859;4860 5887;5888;5889;5890;5891;5892;5893;5894;5895;5896;5897;5898;5899;5900 5891 14 AIETTDIISR Unmodified 1117.5979 0.59790293 2489 Q96HS1;Q96HS1-2 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 45.104 44.995 2 1.5733E-09 13901 20211116_3430_TMUAki_TMT10x_P_F3 185.81 128.77 4726200 7295500 55344 9214000 7074800 6173600 4526200 5857100 5820700 5008100 6478800 4400900 6814600 472040 9218800 6722600 6469700 4764500 5945600 5888300 4926100 6229500 3 3 2 3 3 3 3 3 3 3 3 1904300 2596500 0 3350900 4581300 3854200 2182600 2076000 2128000 1827700 2408900 1773100 2425700 191110 3372700 4332200 3855400 2337600 2193100 2177200 1795300 2315100 1 1 0 1 1 1 1 1 1 1 1 2821900 4698900 55344 5863100 2493500 2319400 2343700 3781100 3692700 3180300 4069900 2627900 4389000 280930 5846200 2390500 2614300 2426900 3752600 3711100 3130800 3914400 2 2 2 2 2 2 2 2 2 2 2 357450000 181450000 176000000 918 2489 870 4861;4862;4863 5901;5902;5903 5901 3 AIEVGRENR Unmodified 1042.552 0.55195579 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 27.592 27.332 3 5.2183E-05 8072 20211116_3441_TMUAki_TMT10x_S_F3 140.17 71.946 513850 776940 8042 656720 529500 685790 576390 441750 435390 433290 572010 478500 724510 49013 678890 509300 691360 577840 461200 453960 423520 547570 2 2 1 2 2 2 2 2 2 2 2 263210 370060 8042 318550 269500 427560 274780 229840 226320 232470 281960 245130 345110 29405 330240 259030 424400 276940 243740 234340 226940 270280 1 1 1 1 1 1 1 1 1 1 1 250640 406880 0 338170 260010 258230 301620 211910 209070 200810 290050 233360 379400 19609 348650 250270 266960 300900 217460 219620 196580 277300 1 1 0 1 1 1 1 1 1 1 1 27477000 9621500 17856000 919 897 871 4864;4865 5904;5905 5905 2 AIEVGRENREDYR Unmodified 1605.7859 0.78593148 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 2 By MS/MS By MS/MS 1.75 0.829 4 2 2 4 4 29.154 29.047 3;4 1.1236E-18 7183 20211116_3429_TMUAki_TMT10x_P_F2 180.11 154.06 1446100 2184000 19482 2320500 2735900 2068100 1659700 1732900 1878300 1449400 2156700 1346400 2038400 132380 2353800 2595900 2114900 1746500 1770300 1911200 1427200 2071800 7 7 5 7 7 7 7 7 7 7 7 704020 1056200 16715 1137600 1540400 1365500 828600 816600 925810 745480 1012000 655600 985860 80401 1158200 1459700 1364700 880710 855830 940650 731010 973550 4 4 3 4 4 4 4 4 4 4 4 742070 1127800 2767 1182900 1195600 702640 831100 916320 952510 703910 1144700 690810 1052500 51976 1195700 1136200 750230 865840 914510 970520 696220 1098300 3 3 2 3 3 3 3 3 3 3 3 212800000 93350000 119450000 920 897 872 4866;4867;4868;4869;4870;4871;4872;4873 5906;5907;5908;5909;5910;5911 5908 6 AIFAGYKR Unmodified 924.51814 0.51813647 714 P18077 RPL35A 60S ribosomal protein L35a yes yes 0 0 0 1 By MS/MS 4 0 1 1 39.248 39.429 3 0.048535 10551 20211116_3442_TMUAki_TMT10x_S_F4 53.679 32.379 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 921 714 873 4874 5912 5912 1 AIFLADGNVFTTGFSR Unmodified 1714.8679 0.8678702 3174 Q9ULV4;Q9ULV4-2;Q9ULV4-3 CORO1C Coronin-1C yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 4 4 4 4 78.629 78.577 2;3 2.9414E-53 28643 20211116_3441_TMUAki_TMT10x_S_F3 275.63 241.67 28265000 49252000 306310 43697000 29149000 40339000 34180000 25095000 25246000 26929000 38193000 26318000 45937000 2246800 44921000 28085000 40959000 34130000 26339000 26534000 26225000 36442000 6 6 3 6 6 6 6 6 6 6 6 17311000 29569000 255150 26653000 16017000 29210000 19895000 15643000 15578000 16030000 22331000 16120000 27580000 1343500 27435000 15467000 29294000 19844000 16601000 16277000 15640000 21333000 4 4 2 4 4 4 4 4 4 4 4 10953000 19684000 51164 17044000 13131000 11129000 14284000 9451900 9667900 10899000 15862000 10198000 18357000 903280 17486000 12618000 11665000 14286000 9738000 10257000 10585000 15109000 2 2 1 2 2 2 2 2 2 2 2 7713300000 3687900000 4025400000 922 3174 874 4875;4876;4877;4878;4879;4880;4881;4882 5913;5914;5915;5916;5917;5918 5918 6 AIFQQPPVGVR Unmodified 1210.6822 0.68224168 2055 Q7L2E3;Q7L2E3-2;Q7L2E3-3 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 0 0 0 0 By MS/MS 2 0 1 1 50.906 50.757 2 0.013065 14594 20211116_3440_TMUAki_TMT10x_S_F2 62.546 18.738 2671500 4438700 78700 4859400 2257700 2319700 1998900 3572800 3552300 3151700 3512200 2488000 4143300 289040 4889700 2163100 2547900 2089200 3556800 3544400 3095500 3389300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2671500 4438700 78700 4859400 2257700 2319700 1998900 3572800 3552300 3151700 3512200 2488000 4143300 289040 4889700 2163100 2547900 2089200 3556800 3544400 3095500 3389300 1 1 1 1 1 1 1 1 1 1 1 91768000 0 91768000 923 2055 875 4883 5919 5919 1 AIFQTIQNR Unmodified 1089.5931 0.59309232 425 O95373 IPO7 Importin-7 yes yes 0 0 0 0 By MS/MS 2 0 1 1 47.762 47.482 2 0.001819 14618 20211116_3429_TMUAki_TMT10x_P_F2 93.178 65.442 2297700 4221900 14035 4414500 5604100 5812100 4208900 2374600 2894600 2481000 3426100 2139500 3940200 249880 4510800 5339200 5757500 4301500 2591000 3021200 2418700 3288600 1 1 1 1 1 1 1 1 1 1 1 2297700 4221900 14035 4414500 5604100 5812100 4208900 2374600 2894600 2481000 3426100 2139500 3940200 249880 4510800 5339200 5757500 4301500 2591000 3021200 2418700 3288600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 131300000 131300000 0 924 425 876 4884 5920 5920 1 AIFTGYYGK Unmodified 1018.5124 0.51238239 581 P09543;P09543-2 CNP 2',3'-cyclic-nucleotide 3'-phosphodiesterase yes no 0 0 0 0 By MS/MS 2 0 2 2 57.838 57.585 2 0.00026345 18736 20211116_3429_TMUAki_TMT10x_P_F2 95.815 69.122 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 925 581 877 4885;4886 5921;5922 5922 2 AIFTTGQGASAVGLTAYVQR Unmodified 2010.0534 0.053439139 1114 P49736 MCM2 DNA replication licensing factor MCM2 yes yes 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 2 4 4 6 4 69.09 68.875 2;3 8.7788E-118 22585 20211116_3442_TMUAki_TMT10x_S_F4 359.59 285.21 39364000 68609000 448600 61904000 47288000 59966000 45367000 47879000 41972000 45238000 51855000 36653000 63994000 3168000 63597000 45304000 60937000 46013000 49211000 43198000 44291000 49717000 13 13 6 13 13 13 13 13 13 13 13 21317000 37772000 87241 32500000 22774000 40521000 24391000 27777000 23173000 24880000 26902000 19848000 35226000 1301300 33648000 21870000 40499000 24618000 28799000 23760000 24419000 25836000 7 7 2 7 7 7 7 7 7 7 7 18047000 30836000 361360 29404000 24514000 19445000 20976000 20101000 18799000 20358000 24953000 16806000 28768000 1866800 29949000 23434000 20438000 21394000 20412000 19438000 19872000 23881000 6 6 4 6 6 6 6 6 6 6 6 11736000000 6270600000 5465300000 926 1114 878 4887;4888;4889;4890;4891;4892;4893;4894;4895;4896 5923;5924;5925;5926;5927;5928;5929;5930;5931;5932;5933;5934;5935;5936 5935 14 AIGAVPLIQGEYMIPCEK Oxidation (M) 2004.006 0.0060199404 536 P07339 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes yes 0 0 1 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 73.651 73.588 2;3 4.3499E-08 23481 20211116_3445_TMUAki_TMT10x_S_F6 102.78 90.8 12576000 20976000 12799 20117000 13694000 23736000 15742000 14641000 13616000 14517000 15850000 11709000 19570000 960720 20638000 13176000 23753000 15795000 15341000 14024000 14183000 15221000 4 4 1 4 4 4 4 4 4 4 4 10299000 16967000 12799 16683000 10247000 20642000 12764000 11900000 10742000 11841000 12978000 9588500 15831000 771550 17098000 9883400 20588000 12753000 12538000 11096000 11567000 12450000 3 3 1 3 3 3 3 3 3 3 3 2277100 4009700 0 3434700 3447100 3093800 2977600 2741000 2873500 2675400 2872100 2120000 3739300 189170 3539500 3292400 3164800 3041600 2802700 2927800 2615700 2770600 1 1 0 1 1 1 1 1 1 1 1 2342600000 981520000 1361100000 927 536 879 4897;4898;4899 5937;5938;5939;5940;5941 5940 460 5 AIGAVPLIQGEYMIPCEK Unmodified 1988.0111 0.011105318 536 P07339 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes yes 0 0 0 0 By MS/MS 7 0 1 1 77.491 77.554 3 2.9298E-06 27254 20211116_3446_TMUAki_TMT10x_S_F7 95.347 76.983 8948700 15942000 213060 13908000 13786000 9819900 12803000 8692400 7549900 8493500 11510000 8333200 14868000 936410 14271000 13203000 10231000 12876000 8888700 8051100 8303400 10981000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8948700 15942000 213060 13908000 13786000 9819900 12803000 8692400 7549900 8493500 11510000 8333200 14868000 936410 14271000 13203000 10231000 12876000 8888700 8051100 8303400 10981000 2 2 1 2 2 2 2 2 2 2 2 960560000 0 960560000 928 536 879 4900 5942;5943 5942 2 AIGDHFYK Unmodified 949.46577 0.46576654 183 O15355 PPM1G Protein phosphatase 1G yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 37.872 37.931 3 0.013756 8728 20211116_3434_TMUAki_TMT10x_P_F6 61.582 30.353 767130 1174200 20708 1419500 1642100 1280800 898410 693440 761590 661020 933940 714420 1096600 94089 1428700 1557000 1300200 945950 733710 786890 646920 895600 3 3 2 3 3 3 3 3 3 3 3 585860 895380 18444 1077600 1476800 1136100 719690 539120 592580 523860 712530 545640 836160 78240 1087300 1398200 1140400 765670 577810 612670 512250 683640 1 1 1 1 1 1 1 1 1 1 1 181260 278860 2264 341900 165260 144700 178720 154320 169010 137160 221410 168780 260440 15849 341400 158860 159790 180280 155900 174220 134670 211970 2 2 1 2 2 2 2 2 2 2 2 125710000 115870000 9838800 929 183 880 4901;4902;4903 5944;5945;5946 5944 3 AIGHVIEEGGVK Unmodified 1207.6561 0.65608651 3111 Q9UH03;Q9UH03-2 SEPT3 Neuronal-specific septin-3 yes no 0 0 0 0 By MS/MS 4 0 1 1 38.954 39.135 3 0.038941 10429 20211116_3442_TMUAki_TMT10x_S_F4 42.083 21.182 653760 1053600 0 1215500 580380 559250 622190 953510 1040300 817580 1013800 608530 983750 30633 1218700 556080 619060 641870 945500 1039100 804090 978790 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 653760 1053600 0 1215500 580380 559250 622190 953510 1040300 817580 1013800 608530 983750 30633 1218700 556080 619060 641870 945500 1039100 804090 978790 1 1 0 1 1 1 1 1 1 1 1 24055000 0 24055000 930 3111 881 4904 5947 5947 1 AIGIEPSLATYHHIIR Unmodified 1789.9839 0.98390301 2452 Q96EY7 PTCD3 Pentatricopeptide repeat domain-containing protein 3, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 3 1 2 49.357 49.354 3;4 6.0055E-15 13899 20211116_3436_TMUAki_TMT10x_P_F8 142.85 125.04 2688500 5004200 29365 4564200 3650300 3800100 3031700 3700500 3171100 3259700 3767700 2503500 4667800 260500 4675900 3486100 3916200 3111800 3754300 3241100 3201800 3616100 3 3 2 3 3 3 3 3 3 3 3 794360 1448400 18260 1352000 1369600 1682800 1081700 1014800 873140 922150 1085600 739770 1351200 90933 1391100 1307100 1678900 1105800 1062700 904940 904430 1040700 1 1 1 1 1 1 1 1 1 1 1 1894200 3555800 11105 3212100 2280700 2117300 1950000 2685800 2298000 2337600 2682100 1763700 3316700 169560 3284800 2179000 2237300 2006000 2691600 2336200 2297300 2575400 2 2 1 2 2 2 2 2 2 2 2 528240000 243200000 285050000 931 2452 882 4905;4906;4907 5948;5949;5950;5951 5948 4 AIGISNFNHLQVEMILNKPGLK Oxidation (M) 2451.3308 0.33079997 680 P15121 AKR1B1 Aldose reductase yes yes 0 0 1 1 By MS/MS By MS/MS 3.71 0.452 2 5 3 4 69.768 69.616 3;4;5 1.2705E-26 22849 20211116_3442_TMUAki_TMT10x_S_F4 169.19 152.89 57310000 103060000 602890 85311000 64811000 113510000 65624000 77885000 82066000 92645000 76851000 53362000 96100000 4926600 88707000 62169000 113100000 67031000 81428000 82584000 89873000 74297000 12 12 5 12 12 12 12 12 12 12 12 23406000 38463000 170510 30043000 22002000 61793000 24384000 27841000 29273000 36833000 27515000 21791000 35859000 1692200 31719000 21142000 60229000 24760000 30290000 29504000 35603000 26597000 4 4 1 4 4 4 4 4 4 4 4 33904000 64597000 432380 55268000 42809000 51717000 41240000 50044000 52794000 55811000 49336000 31570000 60241000 3234400 56988000 41027000 52868000 42271000 51138000 53080000 54271000 47700000 8 8 4 8 8 8 8 8 8 8 8 12562000000 6015000000 6546600000 932 680 883 4908;4909;4910;4911;4912;4913;4914 5952;5953;5954;5955;5956;5957;5958;5959;5960;5961;5962;5963;5964 5961 761 13 AIGLEIK Unmodified 742.45889 0.45889025 811 P26358;P26358-2;P26358-3 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 52.217 52.402 2 0.014114 14517 20211116_3444_TMUAki_TMT10x_S_F5 94.262 12.304 3447700 5433400 8772.6 5638000 3255700 2929500 3267700 3560700 3517700 3272700 4290100 3210200 5070700 291330 5696700 3122600 3165600 3321700 3579800 3595200 3208100 4114500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3447700 5433400 8772.6 5638000 3255700 2929500 3267700 3560700 3517700 3272700 4290100 3210200 5070700 291330 5696700 3122600 3165600 3321700 3579800 3595200 3208100 4114500 1 1 1 1 1 1 1 1 1 1 1 67454000 0 67454000 933 811 884 4915;4916 5965;5966 5966 2 AIGNIELGIR Unmodified 1054.6135 0.61349341 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 56.516 56.645 2 1.1847E-09 16517 20211116_3445_TMUAki_TMT10x_S_F6 189.38 130.56 44328000 73618000 332540 75936000 57977000 65284000 42795000 55314000 53127000 48957000 57046000 41276000 68702000 4146100 77144000 55228000 66940000 44523000 56552000 53735000 48076000 54909000 6 6 4 6 6 6 6 6 6 6 6 20430000 33554000 160510 34835000 31248000 43446000 22922000 24248000 22888000 21390000 25406000 19024000 31315000 1983900 35576000 29762000 43297000 23685000 25537000 23375000 21008000 24430000 3 3 2 3 3 3 3 3 3 3 3 23897000 40064000 172040 41101000 26729000 21838000 19874000 31065000 30239000 27567000 31640000 22252000 37388000 2162200 41568000 25466000 23642000 20838000 31015000 30360000 27068000 30478000 3 3 2 3 3 3 3 3 3 3 3 2636800000 1372800000 1263900000 934 1057 885 4917;4918;4919;4920;4921 5967;5968;5969;5970;5971;5972 5971 6 AIGPHDVLATLLNNLK Unmodified 1687.9621 0.96210494 345 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 2 4 3 3 79.45 79.452 2;3 2.269E-47 26839 20211116_3442_TMUAki_TMT10x_S_F4 252.08 229.6 22794000 37420000 44747 36459000 24864000 34432000 28794000 22719000 21647000 24221000 26625000 21222000 34914000 1739300 37231000 23928000 34939000 28781000 23736000 22512000 23594000 25530000 5 5 1 5 5 5 5 5 5 5 5 11815000 17991000 44747 17141000 11343000 21388000 13235000 11762000 10904000 11855000 13277000 11001000 16785000 981470 17610000 10924000 21311000 13254000 12447000 11280000 11575000 12735000 2 2 1 2 2 2 2 2 2 2 2 10980000 19429000 0 19318000 13522000 13044000 15559000 10958000 10743000 12366000 13348000 10222000 18129000 757850 19621000 13004000 13628000 15526000 11288000 11232000 12019000 12795000 3 3 0 3 3 3 3 3 3 3 3 5482900000 1624900000 3857900000 935 345 886 4922;4923;4924;4925;4926;4927 5973;5974;5975;5976;5977;5978;5979 5976 7 AIGSASEGAQSSLQEVYHK Unmodified 1960.949 0.94903365 835 P28066;P28066-2 PSMA5 Proteasome subunit alpha type-5 yes no 0 0 0 0 By MS/MS By MS/MS 4.75 0.433 1 3 3 1 47.295 47.455 3;4 3.6519E-32 13604 20211116_3433_TMUAki_TMT10x_P_F5 195.92 166.58 8685200 15187000 71140 17307000 16713000 18767000 10785000 15671000 17313000 13893000 14121000 8086900 14179000 855900 17529000 15878000 18959000 11451000 16036000 17214000 13642000 13721000 5 5 2 5 5 5 5 5 5 5 5 4791000 8307500 34903 9630500 13389000 15262000 8460000 8270900 9053100 7455100 7539200 4461100 7756700 539040 9815500 12715000 15043000 8857400 8737700 9130300 7314600 7319700 3 3 1 3 3 3 3 3 3 3 3 3894100 6879200 36237 7677000 3324300 3505700 2324600 7400200 8259900 6438200 6581500 3625800 6422000 316860 7713100 3162500 3916200 2593900 7298700 8083800 6327500 6400900 2 2 1 2 2 2 2 2 2 2 2 1536700000 1313900000 222790000 936 835 887 4928;4929;4930;4931 5980;5981;5982;5983;5984 5981 5 AIGVKPPR Unmodified 836.52322 0.52322184 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 32.115 32.006 3 0.0016083 9721 20211116_3441_TMUAki_TMT10x_S_F3 102.3 81.776 5854000 9591500 112100 9077000 6954900 7707900 7655800 6148600 6683700 6388000 7547300 5451400 8948000 593740 9275900 6692400 7901700 7698900 6337400 6872700 6229000 7253800 6 6 5 6 6 6 6 6 6 6 6 1846300 2992600 71821 2929200 2715200 3795700 2545100 2258900 2439100 2247800 2507400 1719700 2792200 232180 3005700 2603500 3778800 2587200 2373900 2488500 2195800 2416700 2 2 2 2 2 2 2 2 2 2 2 4007700 6598900 40276 6147800 4239700 3912200 5110700 3889700 4244500 4140200 5039800 3731700 6155800 361560 6270200 4088800 4122900 5111700 3963500 4384200 4033200 4837100 4 4 3 4 4 4 4 4 4 4 4 1042000000 724970000 317050000 937 1235 888 4932;4933;4934;4935 5985;5986;5987;5988;5989;5990 5989 6 AIGVLTSGGDAQGMNAAVR Oxidation (M) 1802.8945 0.89449566 1487 Q01813 PFKP ATP-dependent 6-phosphofructokinase, platelet type no no 0 0 1 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 45.594 45.702 3 0.0059555 12078 20211116_3445_TMUAki_TMT10x_S_F6 53.44 39.021 2459800 3690000 16952 4608600 5620000 6011800 3461200 3805200 3803700 3182800 3558900 2290400 3446600 263990 4657600 5335500 5988300 3634300 3961600 3845900 3134200 3440800 2 2 2 2 2 2 2 2 2 2 2 2459800 3690000 16952 4608600 5620000 6011800 3461200 3805200 3803700 3182800 3558900 2290400 3446600 263990 4657600 5335500 5988300 3634300 3961600 3845900 3134200 3440800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 398410000 398410000 0 938 1487 889 4936;4937;4938 5991;5992;5993 5993 2015 3 AIHEVFEVGVTSHR Unmodified 1579.8107 0.81068967 2856 Q9HB90 RRAGC Ras-related GTP-binding protein C yes yes 0 0 0 0 By MS/MS 6 0 1 1 39.459 39.476 4 0.00066034 9240 20211116_3434_TMUAki_TMT10x_P_F6 77.367 64.49 378390 535300 31097 630400 714550 740830 439850 391070 408600 316820 515190 352550 499850 65060 638050 680120 740040 459560 413040 420830 312480 493680 1 1 1 1 1 1 1 1 1 1 1 378390 535300 31097 630400 714550 740830 439850 391070 408600 316820 515190 352550 499850 65060 638050 680120 740040 459560 413040 420830 312480 493680 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27760000 27760000 0 939 2856 890 4939 5994 5994 1 AIHNIFR Unmodified 869.48717 0.48717069 2243 Q8NEU8;Q8NEU8-2;Q8NEU8-3;Q9UKG1 APPL2;APPL1 DCC-interacting protein 13-beta;DCC-interacting protein 13-alpha yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 33.971 34.003 3 0.0036034 8128 20211116_3428_TMUAki_TMT10x_P_F1 97.596 72.965 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 940 2243 891 4940;4941 5995;5996 5995 2 AIHTAPVATMAFDPTSTLLATGGCDGAVR Oxidation (M) 2916.411 0.41097714 1563 Q12788 TBL3 Transducin beta-like protein 3 yes yes 0 0 1 0 By MS/MS By MS/MS 7 0 2 1 1 63.607 64.171 3 2.0926E-37 21605 20211116_3446_TMUAki_TMT10x_S_F7 167.51 155.43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 941 1563 892 4942;4943 5997;5998 5998 2110 2 AIHVLDVEQGQLER Unmodified 1605.8475 0.84746911 2820 Q9H6Y2 WDR55 WD repeat-containing protein 55 yes yes 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 47.753 47.666 3 5.4406E-05 16207 20211116_3441_TMUAki_TMT10x_S_F3 94.781 77.269 645620 1091900 6907.5 1185200 625140 578840 555330 1069500 1024100 911870 1014400 601180 1019200 59677 1193400 598080 638110 581460 1057900 1021000 897070 978850 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 645620 1091900 6907.5 1185200 625140 578840 555330 1069500 1024100 911870 1014400 601180 1019200 59677 1193400 598080 638110 581460 1057900 1021000 897070 978850 1 1 1 1 1 1 1 1 1 1 1 130880000 0 130880000 942 2820 893 4944;4945 5999 5999 1 AIIASNIMYIVGQYPR Oxidation (M) 1823.9604 0.96039038 153 O14980 XPO1 Exportin-1 yes yes 0 0 1 0 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 76.431 76.43 3 2.12E-05 25487 20211116_3433_TMUAki_TMT10x_P_F5 91.441 72.845 6778200 10890000 202440 9815500 7806300 13297000 8428900 9018900 7529700 8413000 8615600 6312700 10157000 765020 10141000 7512900 13235000 8489400 9367600 7738100 8241500 8277500 3 3 3 3 3 3 3 3 3 3 3 4738200 7600300 179230 6882200 4698200 11164000 6143700 6451200 5444400 5882200 6009600 4413000 7089200 559300 7135700 4552100 11003000 6134600 6780000 5589400 5768300 5779700 2 2 2 2 2 2 2 2 2 2 2 2040000 3289200 23211 2933300 3108000 2132700 2285200 2567700 2085300 2530800 2606000 1899600 3067900 205720 3005600 2960900 2231800 2354800 2587600 2148700 2473300 2497800 1 1 1 1 1 1 1 1 1 1 1 733410000 577660000 155750000 943 153 894 4946;4947;4948 6000;6001;6002 6000 108 3 AIIASNIMYIVGQYPR Unmodified 1807.9655 0.96547575 153 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 79.383 79.371 3 0.011238 26175 20211116_3436_TMUAki_TMT10x_P_F8 49.066 29.743 4714600 8046800 105940 7735000 4916000 6236800 5622300 3637500 3846700 4184300 5527000 4390500 7507300 488780 7890600 4737600 6387600 5611000 3845900 4050600 4064100 5279700 2 2 1 2 2 2 2 2 2 2 2 2362600 4147100 0 4051400 2012600 3956500 2731900 1922600 1903000 2045800 2848600 2199800 3869300 187330 4138400 1947600 3990800 2707800 2061100 2005800 1992900 2718600 1 1 0 1 1 1 1 1 1 1 1 2352000 3899600 105940 3683600 2903400 2280300 2890400 1714900 1943700 2138600 2678400 2190800 3638000 301450 3752100 2790000 2396900 2903200 1784800 2044900 2071200 2561000 1 1 1 1 1 1 1 1 1 1 1 1354500000 831730000 522810000 944 153 894 4949;4950 6003;6004 6003 2 AIIDHFGQR Unmodified 1055.5512 0.55122751 814 P26374 CHML Rab proteins geranylgeranyltransferase component A 2 yes yes 0 0 0 0 By MS/MS 6 0 1 1 36.661 36.649 3 0.004865 8058 20211116_3434_TMUAki_TMT10x_P_F6 64.654 44.867 398510 555960 1114.2 546230 507430 622670 446780 312330 281460 308690 413280 371060 518740 35603 559080 485090 622640 451240 333110 298240 301640 394600 1 1 1 1 1 1 1 1 1 1 1 398510 555960 1114.2 546230 507430 622670 446780 312330 281460 308690 413280 371060 518740 35603 559080 485090 622640 451240 333110 298240 301640 394600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9266800 9266800 0 945 814 895 4951 6005 6005 1 AIIEEYLHLNDMK Oxidation (M) 1603.7916 0.79159371 1511 Q04637;Q04637-3;Q04637-8;Q04637-5;Q04637-4;Q04637-9;Q04637-6;Q04637-7 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 1 0 By MS/MS By MS/MS 4.5 0.957 1 2 2 1 3 3 68.951 68.852 3 0.00013954 22307 20211116_3433_TMUAki_TMT10x_P_F5 86.291 68.49 14474000 25382000 485860 24940000 17430000 28460000 18937000 15829000 15909000 17102000 17886000 13480000 23682000 1694200 25527000 16780000 28492000 19036000 16770000 16387000 16650000 17192000 4 4 4 4 4 4 4 4 4 4 4 11637000 20777000 408840 20199000 14717000 25549000 15592000 13285000 13433000 14552000 14470000 10838000 19385000 1388900 20727000 14158000 25422000 15703000 14164000 13797000 14160000 13926000 3 3 3 3 3 3 3 3 3 3 3 2836800 4604500 77017 4740700 2712700 2910900 3344500 2544100 2475500 2549900 3415900 2641900 4297000 305230 4799300 2621700 3070000 3332600 2605400 2589800 2490100 3266100 1 1 1 1 1 1 1 1 1 1 1 1892000000 1369400000 522640000 946 1511 896 4952;4953;4954;4955;4956;4957 6006;6007;6008;6009;6010 6007 2047 5 AIIEEYLHLNDMK Unmodified 1587.7967 0.79667909 1511 Q04637;Q04637-3;Q04637-8;Q04637-5;Q04637-4;Q04637-9;Q04637-6;Q04637-7 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 0 By MS/MS 6 0 2 2 74.555 74.507 3 7.3372E-05 23530 20211116_3434_TMUAki_TMT10x_P_F6 85.554 64.891 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 947 1511 896 4958;4959 6011;6012 6012 2 AIIESDQEQGRK Unmodified 1372.6947 0.69465686 1561 Q12765;Q12765-2;Q12765-3 SCRN1 Secernin-1 yes no 0 0 0 1 By MS/MS 3 0 1 1 32.142 31.897 3 0.00026865 9779 20211116_3441_TMUAki_TMT10x_S_F3 83.615 44.35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 948 1561 897 4960 6013 6013 1 AIIIFVPVPQLK Unmodified 1336.8482 0.84824438 1332 P62081 RPS7 40S ribosomal protein S7 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 79.992 79.985 3 0.017954 27072 20211116_3442_TMUAki_TMT10x_S_F4 58.63 39.532 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 949 1332 898 4961;4962 6014;6015 6015 2 AIIKPQYVDQIPK Unmodified 1511.8712 0.87116466 1303 P61221 ABCE1 ATP-binding cassette sub-family E member 1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.75 3.03 3 1 3 1 54.632 54.586 3;4 1.117E-14 15977 20211116_3436_TMUAki_TMT10x_P_F8 167.98 126.58 57810000 96565000 299880 96662000 113500000 153720000 87138000 98393000 104210000 99093000 87821000 53828000 90106000 5713100 99457000 108170000 151840000 90294000 102850000 104690000 96751000 85226000 8 8 5 8 8 8 8 8 8 8 8 52365000 86072000 225000 86140000 108150000 147730000 82268000 89017000 94394000 88885000 78445000 48758000 80315000 5193200 88793000 103050000 145380000 85176000 93466000 94933000 86815000 76167000 7 7 4 7 7 7 7 7 7 7 7 5445000 10493000 74885 10522000 5350900 5996100 4870100 9375500 9821100 10208000 9375900 5070400 9790900 519900 10665000 5123100 6463600 5118400 9386800 9758800 9935200 9058400 1 1 1 1 1 1 1 1 1 1 1 3205900000 2499400000 706520000 950 1303 899 4963;4964;4965;4966 6016;6017;6018;6019;6020;6021;6022;6023 6020 8 AIILNTPHNPLGK Unmodified 1386.7983 0.79833407 2030 Q6YP21;Q6YP21-3 CCBL2 Kynurenine--oxoglutarate transaminase 3 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 52.468 52.221 3 1.1188E-09 18037 20211116_3441_TMUAki_TMT10x_S_F3 135.6 107.74 5998200 10278000 63626 10768000 7949200 8274300 6436000 9065200 8503600 7836300 8727200 5585400 9592500 583920 10913000 7587900 8600900 6671400 9140200 8568400 7703900 8411900 3 3 3 3 3 3 3 3 3 3 3 1903600 2964500 25386 3117600 3478500 4306100 2590400 2636100 2562800 2397000 2810800 1772600 2766700 203540 3187400 3314600 4275900 2673100 2757300 2617300 2350900 2703800 1 1 1 1 1 1 1 1 1 1 1 4094700 7313800 38240 7650300 4470700 3968200 3845600 6429100 5940700 5439200 5916400 3812800 6825800 380380 7725700 4273300 4324900 3998300 6382900 5951100 5353000 5708100 2 2 2 2 2 2 2 2 2 2 2 391990000 196530000 195460000 951 2030 900 4967;4968 6024;6025;6026 6026 3 AIIRENEFSFEDNAIR Unmodified 1922.9486 0.94863972 1735 Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 0 1 By MS/MS By MS/MS 4 0.756 2 3 2 4 3 55.706 55.687 3 2.6453E-36 17180 20211116_3442_TMUAki_TMT10x_S_F4 216.71 185 30758000 48792000 56007 50512000 37147000 48429000 31266000 39490000 37146000 35990000 42923000 28636000 45534000 2097400 51378000 35441000 49264000 32204000 40497000 37738000 35294000 41228000 7 7 3 7 7 7 7 7 7 7 7 15362000 23650000 26753 24205000 18888000 34043000 18034000 19732000 17315000 18085000 20741000 14304000 22070000 1293500 24801000 18088000 33752000 18315000 20735000 17768000 17730000 19902000 3 3 1 3 3 3 3 3 3 3 3 15396000 25141000 29254 26307000 18259000 14386000 13232000 19758000 19832000 17905000 22182000 14332000 23464000 803870 26577000 17354000 15511000 13889000 19762000 19970000 17564000 21325000 4 4 2 4 4 4 4 4 4 4 4 5698800000 3106800000 2591900000 952 1735 901 4969;4970;4971;4972;4973;4974;4975 6027;6028;6029;6030;6031;6032;6033;6034 6032 8 AIKNDSVVAGGGAIEMELSK Oxidation (M) 2004.0198 0.019755749 2609 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 1 1 By MS/MS By MS/MS 5.29 0.881 2 1 4 6 1 57.016 57.113 3;4 8.0744E-09 17428 20211116_3433_TMUAki_TMT10x_P_F5 106.73 90.05 25270000 44472000 460050 34924000 43539000 59816000 27403000 43122000 45988000 42816000 37913000 23531000 41462000 2585700 36181000 41357000 59026000 28704000 44102000 45685000 41829000 36823000 7 7 5 6 7 7 6 6 7 7 7 17922000 30475000 263740 23270000 35584000 50672000 21211000 24834000 27336000 26516000 24010000 16687000 28409000 1785000 24164000 33762000 49350000 21946000 26029000 27424000 25827000 23264000 5 5 3 4 5 5 4 4 5 5 5 7348600 13997000 196320 11654000 7955300 9144500 6191400 18288000 18652000 16300000 13903000 6843700 13052000 800700 12017000 7595500 9676100 6758200 18073000 18261000 16001000 13559000 2 2 2 2 2 2 2 2 2 2 2 7761500000 5161100000 2600400000 953 2609 902 4976;4977;4978;4979;4980;4981;4982 6035;6036;6037;6038;6039;6040;6041;6042;6043;6044 6037 2845 10 AIKNDSVVAGGGAIEMELSK Unmodified 1988.0248 0.024841127 2609 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 1 By MS/MS By MS/MS 6.6 0.49 2 3 2 3 72.201 72.217 3 1.2944E-12 18081 20211116_3445_TMUAki_TMT10x_S_F6 122.18 104.48 10476000 17916000 55847 17978000 11439000 7628900 9730400 6118000 5091700 7239000 11380000 9755000 16718000 934090 18181000 10929000 8376200 9815700 6330200 5606100 7023800 10783000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10476000 17916000 55847 17978000 11439000 7628900 9730400 6118000 5091700 7239000 11380000 9755000 16718000 934090 18181000 10929000 8376200 9815700 6330200 5606100 7023800 10783000 2 2 2 2 2 2 2 2 2 2 2 1012400000 0 1012400000 954 2609 902 4983;4984;4985;4986;4987 6045;6046;6047;6048;6049 6047 5 AIKVEQATKPSFESGR Unmodified 1746.9264 0.92644771 969 P38159;P38159-2 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed yes no 0 0 0 2 By MS/MS By MS/MS 6.12 2.98 2 1 5 5 3 38.225 38.466 3;4 7.4796E-29 8930 20211116_3447_TMUAki_TMT10x_S_F8 188.96 170.5 11816000 17807000 163590 16582000 30381000 26398000 15222000 22850000 26651000 18342000 20900000 11003000 16611000 1385900 17150000 28759000 26207000 16587000 23276000 26409000 18100000 20340000 14 14 10 14 14 14 14 14 14 14 14 6429900 9526600 104300 8701100 24182000 19952000 9570600 12286000 14192000 10031000 11048000 5987600 8886300 874210 9103100 22826000 19459000 10615000 12810000 14124000 9890000 10755000 10 10 7 10 10 10 10 10 10 10 10 5386200 8280500 59295 7880700 6198600 6446200 5651300 10564000 12459000 8311100 9852500 5015500 7725100 511730 8046400 5933200 6748000 5971700 10466000 12284000 8209900 9585000 4 4 3 4 4 4 4 4 4 4 4 1712400000 972890000 739530000 955 969 903 4988;4989;4990;4991;4992;4993;4994;4995 6050;6051;6052;6053;6054;6055;6056;6057;6058;6059;6060;6061;6062;6063 6062 14 AILCLLLGGVER Unmodified 1312.7537 0.75369207 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.632 1 3 1 2 3 80.99 80.996 2;3 4.8539E-15 26215 20211116_3444_TMUAki_TMT10x_S_F5 187.14 157.79 18555000 29122000 227960 28707000 14965000 26033000 20689000 14341000 12449000 16561000 19818000 17278000 27172000 1700500 29275000 14507000 26423000 20431000 15237000 13287000 16083000 18889000 3 3 3 3 3 3 3 3 3 3 3 12115000 18469000 217950 18715000 9806700 18714000 12402000 9853600 8940600 10883000 13794000 11282000 17234000 1175200 19075000 9481600 18865000 12337000 10496000 9419300 10587000 13156000 2 2 2 2 2 2 2 2 2 2 2 6439500 10653000 10015 9992200 5158600 7319100 8286100 4487000 3508500 5677600 6023700 5995900 9937900 525270 10200000 5025500 7557500 8093500 4740600 3867600 5496000 5733000 1 1 1 1 1 1 1 1 1 1 1 1377400000 445890000 931540000 956 799 904 4996;4997;4998;4999;5000 6064;6065;6066 6065 3 AILFSQPLQITDTQQGCIAPVELR Unmodified 2697.416 0.41598617 2221 Q8NBF2;Q8NBF2-2 NHLRC2 NHL repeat-containing protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 1 1 1 1 78.809 78.789 3 4.2869E-08 25919 20211116_3436_TMUAki_TMT10x_P_F8 97.509 90.149 4032500 7233900 91434 6655300 4488300 7117100 5028500 4814800 4005100 5103400 5372700 3755300 6747800 425920 6837300 4322700 7170200 5040700 5020200 4167800 4972400 5140500 3 3 3 3 3 3 3 3 3 3 3 2753200 4742100 43655 4502200 2494100 5658600 3324800 3313900 2780100 3571600 3644100 2563800 4424000 265310 4627200 2415000 5640600 3312200 3495400 2882800 3477600 3488600 2 2 2 2 2 2 2 2 2 2 2 1279300 2491800 47779 2153100 1994200 1458500 1703700 1500900 1225000 1531800 1728600 1191500 2323900 160600 2210100 1907700 1529600 1728500 1524800 1285100 1494800 1651900 1 1 1 1 1 1 1 1 1 1 1 1689300000 1242400000 446900000 957 2221 905 5001;5002 6067;6068;6069 6067 3 AILGSVER Unmodified 843.48142 0.48141661 819 P26639;P26639-2;A2RTX5;A2RTX5-2 TARS;TARSL2 Threonine--tRNA ligase, cytoplasmic;Probable threonine--tRNA ligase 2, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 4.25 0.829 1 1 2 1 3 38.807 38.963 2 0.0020109 10202 20211116_3442_TMUAki_TMT10x_S_F4 114.78 63.817 422560 714690 0 720890 379970 354280 451950 424510 436690 410970 553690 393410 666900 30078 729510 365860 385110 454200 427660 449080 401930 530510 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 422560 714690 0 720890 379970 354280 451950 424510 436690 410970 553690 393410 666900 30078 729510 365860 385110 454200 427660 449080 401930 530510 1 1 0 1 1 1 1 1 1 1 1 61029000 0 61029000 958 819 906 5003;5004;5005;5006 6070;6071;6072 6071 3 AILIFNNHGKPR Unmodified 1378.7834 0.78335271 2342 Q92572 AP3S1 AP-3 complex subunit sigma-1 yes yes 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 40.04 40.131 4 8.1125E-05 9803 20211116_3445_TMUAki_TMT10x_S_F6 98.254 59.455 1564600 2407600 4451.3 2660800 3018400 2618600 1794900 1904100 1937800 1702500 2058900 1456800 2247500 150150 2695900 2863400 2654200 1889000 1966000 1969400 1671000 1982400 2 2 1 2 2 2 2 2 2 2 2 1040100 1566800 0 1741900 2468400 2146400 1271900 1242100 1270500 1096300 1343500 968390 1462600 102160 1770700 2336400 2141400 1352700 1304100 1295200 1076700 1293800 1 1 0 1 1 1 1 1 1 1 1 524540 840890 4451.3 918880 550010 472180 522980 662060 667270 606210 715380 488430 784930 47993 925220 526960 512850 536360 661890 674230 594360 688610 1 1 1 1 1 1 1 1 1 1 1 159260000 121790000 37475000 959 2342 907 5007;5008 6073;6074 6074 2 AILILDNDGDR Unmodified 1213.6303 0.63026569 1321 P61923;P61923-5;P61923-4 COPZ1 Coatomer subunit zeta-1 yes no 0 0 0 0 By MS/MS 3 0 1 1 57.72 57.488 2 0.060276 19062 20211116_3430_TMUAki_TMT10x_P_F3 52.725 37.089 2121300 3445700 32612 3642800 3113300 4718900 2973700 2826300 2647700 2400900 2881800 1975400 3215900 220160 3718400 2983600 4698400 3013600 2956400 2716200 2362300 2772700 1 1 1 1 1 1 1 1 1 1 1 2121300 3445700 32612 3642800 3113300 4718900 2973700 2826300 2647700 2400900 2881800 1975400 3215900 220160 3718400 2983600 4698400 3013600 2956400 2716200 2362300 2772700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 206000000 206000000 0 960 1321 908 5009 6075 6075 1 AILILDNDGDRLFAK Unmodified 1672.9148 0.91482039 1321 P61923;P61923-5;P61923-4 COPZ1 Coatomer subunit zeta-1 yes no 0 0 0 1 By MS/MS By MS/MS 6.5 1.12 2 2 2 2 4 4 72.221 72.264 3 3.213E-30 22978 20211116_3445_TMUAki_TMT10x_S_F6 212.35 190.47 65091000 105160000 1215600 98237000 74934000 108350000 76116000 72856000 68398000 72325000 82096000 60615000 98099000 6667200 100860000 71953000 108950000 76907000 75851000 70407000 70658000 78771000 10 10 10 10 10 10 10 10 10 10 10 44478000 71054000 651420 66622000 46173000 85861000 52816000 49764000 46382000 50096000 55996000 41418000 66285000 4318400 68566000 44479000 85472000 53027000 52428000 47809000 48913000 53720000 7 7 7 7 7 7 7 7 7 7 7 20613000 34105000 564140 31615000 28761000 22485000 23300000 23093000 22016000 22229000 26100000 19197000 31815000 2348800 32292000 27474000 23483000 23880000 23423000 22598000 21746000 25051000 3 3 3 3 3 3 3 3 3 3 3 9630900000 4294500000 5336300000 961 1321 909 5010;5011;5012;5013;5014;5015;5016;5017 6076;6077;6078;6079;6080;6081;6082;6083;6084;6085 6083 10 AILPCIK Unmodified 813.47825 0.47824549 1277 P60842;P60842-2 EIF4A1 Eukaryotic initiation factor 4A-I yes no 0 0 0 0 By MS/MS By MS/MS 4 3.08 4 3 2 3 7 5 54.995 54.943 2 0.0012273 16180 20211116_3428_TMUAki_TMT10x_P_F1 142.42 0 105870000 161610000 1827600 181540000 164700000 165630000 110900000 113040000 109220000 107520000 138850000 98583000 150870000 11130000 183550000 156670000 168530000 115260000 117420000 112240000 105240000 133020000 14 14 11 14 14 14 14 14 14 14 14 65052000 95588000 984780 108500000 123810000 129290000 72189000 67604000 66174000 64592000 84160000 60576000 89242000 6999900 110090000 117470000 129040000 75737000 71758000 68222000 63208000 80630000 7 7 5 7 7 7 7 7 7 7 7 40814000 66018000 842870 73037000 40887000 36341000 38715000 45438000 43050000 42929000 54687000 38008000 61628000 4130500 73465000 39198000 39490000 39518000 45664000 44019000 42030000 52394000 7 7 6 7 7 7 7 7 7 7 7 11252000000 6697800000 4553800000 962 1277 910 5018;5019;5020;5021;5022;5023;5024;5025;5026;5027;5028;5029 6086;6087;6088;6089;6090;6091;6092;6093;6094;6095;6096;6097;6098;6099;6100;6101;6102 6087 17 AILPCQDTPSVK Unmodified 1327.6806 0.6805867 589 P09960;P09960-2;P09960-4;P09960-3 LTA4H Leukotriene A-4 hydrolase yes no 0 0 0 0 By MS/MS 6 0 1 1 49.435 49.535 3 0.083392 13259 20211116_3434_TMUAki_TMT10x_P_F6 38.799 8.8634 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 963 589 911 5030 6103 6103 1 AILQATLREEK Unmodified 1270.7245 0.72450043 1574 Q12904;Q12904-2 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 yes no 0 0 0 1 By MS/MS By MS/MS 6 0.816 2 2 2 2 4 45.959 46.247 3 1.9327E-08 11920 20211116_3434_TMUAki_TMT10x_P_F6 150.69 114.11 13709000 22791000 247110 23753000 22809000 23201000 15379000 18251000 20047000 17671000 19587000 12765000 21270000 1352700 24156000 21689000 23559000 16132000 18789000 20174000 17282000 18909000 4 4 2 4 4 4 4 4 4 4 4 7995300 13045000 15359 13266000 16890000 16941000 8875100 9962900 11844000 9784900 10772000 7443700 12173000 697380 13572000 15987000 16875000 9513400 10476000 11881000 9563700 10424000 2 2 1 2 2 2 2 2 2 2 2 5713300 9746700 231750 10487000 5919400 6260700 6503600 8288100 8203400 7886000 8815600 5321100 9097500 655370 10583000 5702100 6684300 6619000 8312400 8292900 7718400 8485100 2 2 1 2 2 2 2 2 2 2 2 1807300000 816750000 990570000 964 1574 912 5031;5032;5033;5034;5035;5036 6104;6105;6106;6107;6108 6104 5 AILQENGCLSDSDMFSQAGLR Oxidation (M) 2327.0522 0.052194865 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 61.563 61.587 3 4.2842E-05 19634 20211116_3442_TMUAki_TMT10x_S_F4 72.801 66.678 4355900 7781300 81135 7147000 5164700 6535100 5051400 6514100 5722700 5396000 6308700 4056300 7258400 436120 7326700 4953400 6694800 5150600 6590700 5813300 5316100 6067600 3 3 2 3 3 3 3 3 3 3 3 1510900 2657300 0 2354900 1748800 3339600 2028100 2202300 1932300 1587000 2285800 1406700 2478400 116640 2438500 1683100 3315900 2039700 2278200 1982500 1575300 2194100 1 1 0 1 1 1 1 1 1 1 1 2845100 5124000 81135 4792100 3415900 3195500 3023300 4311700 3790500 3809100 4022900 2649600 4780000 319490 4888300 3270300 3378900 3110900 4312500 3830800 3740800 3873500 2 2 2 2 2 2 2 2 2 2 2 1175900000 381500000 794390000 965 1018 913 5037;5038;5039 6109;6110;6111 6110 1310 3 AILQENGCLSDSDMFSQAGLR Unmodified 2311.0573 0.057280242 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 By MS/MS 4 0 1 1 71.449 71.512 3 0.069738 23198 20211116_3431_TMUAki_TMT10x_P_F4 35.195 25.236 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 966 1018 913 5040 6112 6112 1 AILQHLGLESTCDDSIIVK Unmodified 2111.0933 0.093255043 1188 P52789 HK2 Hexokinase-2 yes yes 0 0 0 0 By MS/MS 5 0 1 1 70.385 70.461 3 0.053813 23024 20211116_3433_TMUAki_TMT10x_P_F5 38.577 27.307 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 967 1188 914 5041 6113 6113 1 AILQQLGLNSTCDDSILVK Unmodified 2087.0933 0.093255043 730 P19367;P19367-4;P19367-2;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 By matching By MS/MS 8 0 2 1 1 78.455 78.443 3 0.0001042 25188 20211116_3447_TMUAki_TMT10x_S_F8 71.558 56.304 3205400 6150100 0 4263200 4065300 4160800 3993800 4203600 3950200 3972200 4314100 2984300 5731600 253760 4481000 3894600 4246000 4053500 4264900 4033400 3889000 4150300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3205400 6150100 0 4263200 4065300 4160800 3993800 4203600 3950200 3972200 4314100 2984300 5731600 253760 4481000 3894600 4246000 4053500 4264900 4033400 3889000 4150300 1 1 0 1 1 1 1 1 1 1 1 1717400000 660840000 1056500000 968 730 915 5042;5043 6114 6114 1 AILSTKPPGTFLLR Unmodified 1512.9028 0.90279914 986 P40763;P40763-2;P40763-3 STAT3 Signal transducer and activator of transcription 3 yes no 0 0 0 1 By MS/MS 6 0 1 1 61.807 61.798 3 3.5833E-08 18679 20211116_3445_TMUAki_TMT10x_S_F6 106.33 75.106 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 969 986 916 5044 6115 6115 1 AILVDLEPGTMDSVR Oxidation (M) 1630.8236 0.82362212 1668;2689;539;1640 Q13509;P07437;Q13885;Q9BVA1 TUBB3;TUBB;TUBB2A;TUBB2B Tubulin beta-3 chain;Tubulin beta chain;Tubulin beta-2A chain;Tubulin beta-2B chain no no 0 0 1 0 By MS/MS By MS/MS 3.46 1.32 4 5 21 13 4 4 1 32 20 70.895 70.823 2;3 4.4158E-19 21647 20211116_3430_TMUAki_TMT10x_P_F3 171.55 138.32 330720000 549120000 4379800 510630000 398880000 555630000 374290000 478720000 447560000 443430000 455690000 307940000 512240000 26182000 524320000 381950000 561540000 383210000 489550000 452400000 434530000 439330000 76 76 45 76 76 76 76 76 76 76 76 165000000 266550000 2010900 249100000 195270000 363020000 198720000 229130000 208330000 211210000 219950000 153630000 248650000 13720000 257060000 187360000 359780000 201690000 239190000 211930000 207020000 211810000 44 44 26 44 44 44 44 44 44 44 44 165720000 282570000 2368900 261530000 203610000 192610000 175570000 249590000 239240000 232210000 235740000 154310000 263590000 12462000 267260000 194580000 201750000 181530000 250370000 240470000 227510000 227520000 32 32 19 32 32 32 32 32 32 32 32 285890000000 151250000000 134640000000 970 1640;539;1668;2689 917 5045;5046;5047;5048;5049;5050;5051;5052;5053;5054;5055;5056;5057;5058;5059;5060;5061;5062;5063;5064;5065;5066;5067;5068;5069;5070;5071;5072;5073;5074;5075;5076;5077;5078;5079;5080;5081;5082;5083;5084;5085;5086;5087;5088;5089;5090;5091;5092;5093;5094;5095;5096 6116;6117;6118;6119;6120;6121;6122;6123;6124;6125;6126;6127;6128;6129;6130;6131;6132;6133;6134;6135;6136;6137;6138;6139;6140;6141;6142;6143;6144;6145;6146;6147;6148;6149;6150;6151;6152;6153;6154;6155;6156;6157;6158;6159;6160;6161;6162;6163;6164;6165;6166;6167;6168;6169;6170;6171;6172;6173;6174;6175;6176;6177;6178;6179;6180;6181;6182;6183;6184;6185;6186;6187;6188;6189;6190;6191;6192;6193;6194;6195;6196;6197;6198;6199;6200;6201;6202;6203;6204 6126 464 89 AILVDLEPGTMDSVR Unmodified 1614.8287 0.8287075 1668;2689;539;1640 Q13509;P07437;Q13885;Q9BVA1 TUBB3;TUBB;TUBB2A;TUBB2B Tubulin beta-3 chain;Tubulin beta chain;Tubulin beta-2A chain;Tubulin beta-2B chain no no 0 0 0 0 By MS/MS By MS/MS 3.68 1.44 4 9 32 20 8 7 3 1 60 24 76.822 76.788 2;3 7.0659E-85 25731 20211116_3441_TMUAki_TMT10x_S_F3 336.34 252.12 178700000 282250000 661670 291870000 187100000 200690000 199860000 86098000 71511000 100580000 178610000 166380000 263400000 14240000 295710000 179680000 207490000 198090000 93755000 82167000 97633000 168980000 75 75 43 75 75 75 75 75 75 75 75 117460000 184390000 489350 193020000 114190000 154880000 134490000 58976000 48707000 67718000 117150000 109370000 172080000 9218200 195730000 109970000 157980000 132700000 65065000 55733000 65777000 110890000 59 59 36 59 59 59 59 59 59 59 59 61235000 97860000 172320 98852000 72914000 45808000 65373000 27122000 22804000 32860000 61463000 57014000 91317000 5021900 99982000 69710000 49518000 65387000 28690000 26434000 31856000 58094000 16 16 7 16 16 16 16 16 16 16 16 160750000000 77697000000 83048000000 971 1640;539;1668;2689 917 5097;5098;5099;5100;5101;5102;5103;5104;5105;5106;5107;5108;5109;5110;5111;5112;5113;5114;5115;5116;5117;5118;5119;5120;5121;5122;5123;5124;5125;5126;5127;5128;5129;5130;5131;5132;5133;5134;5135;5136;5137;5138;5139;5140;5141;5142;5143;5144;5145;5146;5147;5148;5149;5150;5151;5152;5153;5154;5155;5156;5157;5158;5159;5160;5161;5162;5163;5164;5165;5166;5167;5168;5169;5170;5171;5172;5173;5174;5175;5176;5177;5178;5179;5180 6205;6206;6207;6208;6209;6210;6211;6212;6213;6214;6215;6216;6217;6218;6219;6220;6221;6222;6223;6224;6225;6226;6227;6228;6229;6230;6231;6232;6233;6234;6235;6236;6237;6238;6239;6240;6241;6242;6243;6244;6245;6246;6247;6248;6249;6250;6251;6252;6253;6254;6255;6256;6257;6258;6259;6260;6261;6262;6263;6264;6265;6266;6267;6268;6269;6270;6271;6272;6273;6274;6275;6276;6277;6278;6279;6280;6281;6282;6283;6284;6285;6286;6287;6288;6289;6290;6291;6292;6293;6294;6295;6296;6297;6298;6299;6300;6301;6302;6303;6304;6305;6306;6307;6308;6309;6310;6311 6293 107 AIMEMPSFYSHGLPR 2 Oxidation (M) 1766.812 0.81201158 1242 P55265;P55265-5;P55265-4;P55265-3;P55265-2 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 2 0 By MS/MS By MS/MS 7 0.707 1 2 1 2 2 43.912 44.171 3 5.3813E-05 13340 20211116_3446_TMUAki_TMT10x_S_F7 91.441 83.716 483540 794730 0 995050 392070 377300 319670 665730 696010 633950 750410 450220 742310 38457 991730 374100 428950 339700 661360 693530 620460 722210 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 483540 794730 0 995050 392070 377300 319670 665730 696010 633950 750410 450220 742310 38457 991730 374100 428950 339700 661360 693530 620460 722210 1 1 0 1 1 1 1 1 1 1 1 116630000 0 116630000 972 1242 918 5181;5182;5183;5184 6312;6313;6314 6314 1684;1685 3 AIMKDPDDHTVCHLLFANQTEK Oxidation (M) 2598.2207 0.22065718 465 P00387;P00387-2;P00387-3 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 0 0 1 1 By MS/MS 6.5 0.5 1 1 2 50.372 50.685 5 1.6899E-10 14073 20211116_3445_TMUAki_TMT10x_S_F6 112.54 98.382 5661400 9986300 0 10594000 4873000 5493300 4167100 8516000 7660400 7289000 7739400 5270600 9320600 366070 10689000 4648800 5978800 4371900 8469200 7643100 7169300 7463500 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5661400 9986300 0 10594000 4873000 5493300 4167100 8516000 7660400 7289000 7739400 5270600 9320600 366070 10689000 4648800 5978800 4371900 8469200 7643100 7169300 7463500 2 2 0 2 2 2 2 2 2 2 2 806800000 0 806800000 973 465 919 5185;5186 6315;6316 6315 351 2 AINCATSGVVGLVNCLR Unmodified 1802.9131 0.91312261 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 2.73 0.772 1 4 8 2 9 6 75.797 75.625 2;3 9.7141E-207 25234 20211116_3430_TMUAki_TMT10x_P_F3 461.83 422.05 28225000 46689000 81268 45097000 26427000 34112000 26997000 20639000 15033000 21075000 28509000 26278000 43560000 2064900 45955000 25338000 35126000 26984000 21677000 16296000 20565000 27085000 13 13 4 13 13 13 13 13 13 13 13 16909000 27489000 35218 27016000 14899000 24384000 15908000 11450000 8400200 11945000 16185000 15743000 25649000 1269800 27555000 14305000 24713000 15851000 12309000 9150500 11646000 15372000 7 7 2 7 7 7 7 7 7 7 7 11316000 19200000 46050 18081000 11528000 9727700 11088000 9188900 6633200 9130000 12325000 10535000 17911000 795060 18400000 11033000 10413000 11133000 9368100 7145100 8919200 11713000 6 6 2 6 6 6 6 6 6 6 6 10058000000 4738000000 5320000000 974 1092 920 5187;5188;5189;5190;5191;5192;5193;5194;5195;5196;5197;5198;5199;5200;5201 6317;6318;6319;6320;6321;6322;6323;6324;6325;6326;6327;6328;6329;6330;6331;6332;6333 6322 17 AINCATSGVVGLVNCLRR Unmodified 1959.0142 0.014233636 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 1 By MS/MS 5 0 1 1 64.367 64.425 3 4.9347E-08 19464 20211116_3444_TMUAki_TMT10x_S_F5 107.69 90.947 3244200 5568500 33953 5693000 4110700 3184300 3310400 3460800 2851300 3630200 4714000 3020900 5196500 312750 5761500 3923500 3404900 3385500 3509800 2986900 3538400 4489700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3244200 5568500 33953 5693000 4110700 3184300 3310400 3460800 2851300 3630200 4714000 3020900 5196500 312750 5761500 3923500 3404900 3385500 3509800 2986900 3538400 4489700 1 1 1 1 1 1 1 1 1 1 1 415460000 0 415460000 975 1092 921 5202 6334 6334 1 AINIGQLVDVK Unmodified 1168.6816 0.68157298 1726 Q14690 PDCD11 Protein RRP5 homolog yes yes 0 0 0 0 By MS/MS 7 0 1 1 69.797 70.241 2 2.562E-06 23621 20211116_3435_TMUAki_TMT10x_P_F7 126.71 83.265 10079000 16453000 84124 16815000 12474000 18344000 12305000 9849400 9754600 9886100 12276000 9385100 15354000 947560 17151000 11961000 18402000 12412000 10444000 10125000 9653700 11764000 2 2 2 2 2 2 2 2 2 2 2 10079000 16453000 84124 16815000 12474000 18344000 12305000 9849400 9754600 9886100 12276000 9385100 15354000 947560 17151000 11961000 18402000 12412000 10444000 10125000 9653700 11764000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 574590000 574590000 0 976 1726 922 5203 6335;6336 6336 2 AINQQTGAFVEISR Unmodified 1532.7947 0.79470526 2380 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.09 0.793 3 4 4 6 5 49.771 49.935 2;3 6.7035E-44 14348 20211116_3431_TMUAki_TMT10x_P_F4 260.28 224.92 28342000 46740000 32509 48731000 40522000 47095000 31806000 43833000 45528000 37466000 40675000 26386000 43621000 2219800 49549000 38616000 48005000 33143000 44540000 45545000 36854000 39388000 9 9 1 9 9 9 9 9 9 9 9 14814000 23705000 0 24128000 27618000 35112000 19034000 20787000 23084000 18586000 20547000 13792000 22121000 1206700 24749000 26252000 34771000 19881000 21792000 23217000 18243000 19899000 4 4 0 4 4 4 4 4 4 4 4 13527000 23035000 32509 24604000 12905000 11983000 12772000 23045000 22444000 18881000 20128000 12594000 21500000 1013100 24800000 12364000 13234000 13262000 22748000 22328000 18611000 19488000 5 5 1 5 5 5 5 5 5 5 5 5680600000 2374000000 3306600000 977 2380 923 5204;5205;5206;5207;5208;5209;5210;5211;5212;5213;5214 6337;6338;6339;6340;6341;6342;6343;6344;6345;6346;6347;6348;6349 6338 13 AIPDLTAPVAAVQAAVSNLVR Unmodified 2075.1739 0.17388863 717 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.943 1 3 3 2 4 5 82.72 82.722 2;3 2.2713E-55 26905 20211116_3444_TMUAki_TMT10x_S_F5 224.86 204.81 3588600 6038900 10510 5848000 4094300 5632600 4364900 3605700 3665500 3911200 4590100 3341200 5634200 252120 5976200 3931800 5705800 4391700 3777500 3792400 3807300 4399300 8 8 2 8 8 8 8 8 8 8 8 1963700 3014200 0 2941000 1911200 3594400 2238800 1867100 1887400 1930600 2372800 1828300 2812300 141910 3015200 1839500 3582700 2242900 1987400 1952700 1882900 2273900 4 4 0 4 4 4 4 4 4 4 4 1624900 3024600 10510 2907000 2183200 2038100 2126100 1738600 1778100 1980600 2217300 1513000 2821900 110210 2961000 2092300 2123200 2148800 1790000 1839800 1924300 2125300 4 4 2 4 4 4 4 4 4 4 4 4474800000 933240000 3541500000 978 717 924 5215;5216;5217;5218;5219;5220;5221;5222;5223 6350;6351;6352;6353;6354;6355;6356;6357;6358;6359 6357 10 AIPELDAYEAEGLALDDEDVEELTASQR Unmodified 3061.4251 0.42514969 1114 P49736 MCM2 DNA replication licensing factor MCM2 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 4 2 2 88.777 88.772 3 5.532E-64 28137 20211116_3439_TMUAki_TMT10x_S_F1 220.66 215.04 2950300 5095000 80134 4818700 3005100 3227600 3346800 2325300 2392600 2643400 3937900 2747600 4753100 238190 4911600 2894900 3365900 3347400 2419200 2530600 2568600 3751000 9 9 3 9 9 9 9 9 9 9 9 1001000 1817900 434.55 1686800 752210 1290400 1108200 648180 910690 1208200 1497300 932070 1695800 2124.5 1724100 730230 1324600 1099400 708200 955920 1156900 1426200 3 3 1 3 3 3 3 3 3 3 3 1949200 3277100 79700 3131900 2252900 1937200 2238600 1677100 1481900 1435300 2440700 1815500 3057300 236070 3187500 2164600 2041400 2248000 1711100 1574700 1411700 2324700 6 6 2 6 6 6 6 6 6 6 6 3385200000 2228200000 1156900000 979 1114 925 5224;5225;5226;5227 6360;6361;6362;6363;6364;6365;6366;6367;6368 6363 9 AIPQLQGYLR Unmodified 1157.6557 0.65569258 1499 Q02878 RPL6 60S ribosomal protein L6 yes yes 0 0 0 0 By MS/MS By MS/MS 2.83 2.41 2 2 1 1 3 3 59.799 59.677 2 5.5521E-11 19552 20211116_3429_TMUAki_TMT10x_P_F2 208.22 138.83 29333000 51647000 114470 49906000 47982000 61207000 34006000 45309000 44605000 36450000 40769000 27311000 48185000 2655500 51204000 45654000 61299000 35553000 46605000 44778000 35964000 39447000 6 6 3 6 6 6 6 6 6 6 6 19664000 33246000 101190 32970000 37409000 52951000 26544000 30477000 29906000 24092000 26859000 18309000 31021000 1848300 33953000 35594000 52205000 27597000 31930000 30169000 23793000 26004000 4 4 2 4 4 4 4 4 4 4 4 9668600 18400000 13286 16936000 10573000 8256100 7462200 14832000 14699000 12358000 13910000 9002400 17164000 807230 17251000 10060000 9093900 7956000 14674000 14609000 12171000 13443000 2 2 1 2 2 2 2 2 2 2 2 4382900000 2647900000 1735000000 980 1499 926 5228;5229;5230;5231;5232;5233 6369;6370;6371;6372;6373;6374;6375 6371 7 AIQLEYSEAR Unmodified 1178.5932 0.5931519 203 O43242;O43242-2 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 44.369 44.034 2 3.5425E-11 14694 20211116_3441_TMUAki_TMT10x_S_F3 212.03 142.44 2229200 3342300 14068 4023200 2118600 1873800 2279600 2256700 2249400 2187400 2946000 2075700 3121300 195110 4024000 2036300 2050000 2302900 2273100 2314400 2139200 2820400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2229200 3342300 14068 4023200 2118600 1873800 2279600 2256700 2249400 2187400 2946000 2075700 3121300 195110 4024000 2036300 2050000 2302900 2273100 2314400 2139200 2820400 2 2 1 2 2 2 2 2 2 2 2 81291000 0 81291000 981 203 927 5234;5235 6376;6377;6378 6378 3 AIQLEYSEARR Unmodified 1334.6943 0.69426293 203 O43242;O43242-2 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes no 0 0 0 1 By matching By MS/MS 4.5 0.5 1 1 1 1 35.91 36.011 3 2.7214E-08 7815 20211116_3444_TMUAki_TMT10x_S_F5 147.58 122.72 866140 1471200 0 1772100 1260700 746120 813320 1162200 1360100 865340 1295000 806220 1373900 47900 1771200 1195700 832730 865300 1151700 1357500 857360 1251300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 866140 1471200 0 1772100 1260700 746120 813320 1162200 1360100 865340 1295000 806220 1373900 47900 1771200 1195700 832730 865300 1151700 1357500 857360 1251300 1 1 0 1 1 1 1 1 1 1 1 479090000 357660000 121430000 982 203 928 5236;5237 6379 6379 1 AIQTLGYFPVGDGDFPHQK Unmodified 2089.0269 0.026890038 1953 Q5VYK3 ECM29 Proteasome-associated protein ECM29 homolog yes yes 0 0 0 0 By MS/MS 7 0 1 1 66.649 67.22 3 6.9484E-09 22364 20211116_3435_TMUAki_TMT10x_P_F7 116.29 99.413 7631300 11582000 119510 11003000 8345100 14893000 9326000 8771000 8036000 9200400 8891700 7105800 10805000 681920 11324000 8028900 14794000 9368600 9239600 8262100 8967900 8551000 2 2 1 2 2 2 2 2 2 2 2 7631300 11582000 119510 11003000 8345100 14893000 9326000 8771000 8036000 9200400 8891700 7105800 10805000 681920 11324000 8028900 14794000 9368600 9239600 8262100 8967900 8551000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 911560000 911560000 0 983 1953 929 5238 6380;6381 6381 2 AIQTVSCLLQGPCDAGNR Unmodified 1958.9302 0.93022924 2802 Q9H3U1;Q9H3U1-2 UNC45A Protein unc-45 homolog A yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 67.489 67.489 3 7.9482E-05 21253 20211116_3436_TMUAki_TMT10x_P_F8 75.743 69.306 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 984 2802 930 5239;5240 6382;6383 6382 2 AIQWGEDGRPFHYLFYTGK Unmodified 2284.1065 0.10653734 1444 P82933 MRPS9 28S ribosomal protein S9, mitochondrial yes yes 0 0 0 1 By MS/MS 3 0 1 1 69.336 69.066 4 3.0636E-06 23896 20211116_3430_TMUAki_TMT10x_P_F3 94.856 79.435 4604100 7056900 8322.2 6854000 3575400 5678200 4493200 2714100 2870400 2814700 3978300 4286900 6584100 375060 6989000 3451800 5790500 4459400 2912100 3030500 2744800 3803400 1 1 1 1 1 1 1 1 1 1 1 4604100 7056900 8322.2 6854000 3575400 5678200 4493200 2714100 2870400 2814700 3978300 4286900 6584100 375060 6989000 3451800 5790500 4459400 2912100 3030500 2744800 3803400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 295010000 295010000 0 985 1444 931 5241 6384 6384 1 AIRDGVIEASINHEK Unmodified 1650.8689 0.86893283 203 O43242;O43242-2 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes no 0 0 0 1 By MS/MS 6 0 1 1 39.812 39.829 4 0.016521 9369 20211116_3434_TMUAki_TMT10x_P_F6 53.449 33.358 2162000 3640200 0 2498800 4280000 5532500 2992700 2618500 3083000 2546500 2987700 2012900 3392500 183980 2675200 4069900 5383600 3105800 2807300 3129100 2490100 2885100 1 1 0 1 1 1 1 1 1 1 1 2162000 3640200 0 2498800 4280000 5532500 2992700 2618500 3083000 2546500 2987700 2012900 3392500 183980 2675200 4069900 5383600 3105800 2807300 3129100 2490100 2885100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 91625000 91625000 0 986 203 932 5242 6385 6385 1 AIRLELQGPR Unmodified 1151.6775 0.67749065 729 P19338 NCL Nucleolin yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 2.5 2 2 2 2 1 3 2 6 8 40.733 40.799 3 3.9037E-14 11992 20211116_3429_TMUAki_TMT10x_P_F2 220.82 183.17 17640000 27556000 77792 28498000 28877000 24468000 18194000 28279000 25241000 21385000 24204000 16424000 25716000 1567800 28946000 27417000 25261000 19232000 28353000 25333000 21170000 23381000 15 15 8 15 15 15 15 15 15 15 15 7709600 11633000 44722 11998000 14389000 16984000 9313000 12029000 11085000 9511500 10132000 7178500 10856000 748780 12289000 13670000 16884000 9766900 12405000 11166000 9393200 9803100 6 6 5 6 6 6 6 6 6 6 6 9930700 15922000 33070 16500000 14488000 7484200 8881200 16249000 14156000 11874000 14073000 9245900 14859000 818970 16657000 13747000 8377500 9465100 15948000 14168000 11777000 13578000 9 9 3 9 9 9 9 9 9 9 9 3900400000 2547100000 1353300000 987 729 933 5243;5244;5245;5246;5247;5248;5249;5250;5251;5252;5253;5254;5255;5256 6386;6387;6388;6389;6390;6391;6392;6393;6394;6395;6396;6397;6398;6399;6400;6401;6402 6387 17 AISAANLHLR Unmodified 1064.6091 0.60907674 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 2 1 1 2 38.369 38.319 3 8.8917E-06 9327 20211116_3428_TMUAki_TMT10x_P_F1 137.46 91.551 555310 861840 5462.3 940790 1136900 1168800 668460 636990 722090 631920 689030 517090 804480 59275 957590 1078600 1164600 704200 674330 731080 617370 665700 1 1 1 1 1 1 1 1 1 1 1 555310 861840 5462.3 940790 1136900 1168800 668460 636990 722090 631920 689030 517090 804480 59275 957590 1078600 1164600 704200 674330 731080 617370 665700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 76024000 58801000 17223000 988 1997 934 5257;5258;5259 6403;6404 6403 2 AISEELDHALNDMTSI Oxidation (M) 1773.8091 0.80909427 527;525;578 P06753-6;P09493-4;P09493;P09493-6;P06753 TPM3;TPM1 Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain no no 0 0 1 0 By matching By MS/MS 1 0 2 1 1 69.07 68.975 3 9.0298E-08 23806 20211116_3439_TMUAki_TMT10x_S_F1 114.7 108.46 1311300 2124700 65175 2223700 1546900 1513800 1588100 1485900 1451200 1643200 1707700 1221400 1982900 172750 2251000 1488200 1585300 1604400 1516900 1491400 1598300 1639400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1311300 2124700 65175 2223700 1546900 1513800 1588100 1485900 1451200 1643200 1707700 1221400 1982900 172750 2251000 1488200 1585300 1604400 1516900 1491400 1598300 1639400 1 1 1 1 1 1 1 1 1 1 1 722920000 435190000 287730000 989 527;578;525 935 5260;5261 6405 6405 446 1 AISEPNFSVAYANMCR Oxidation (M) 1844.8186 0.81855352 1511 Q04637;Q04637-3;Q04637-8;Q04637-5;Q04637-4;Q04637-9;Q04637-6;Q04637-7 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 1 0 By MS/MS 6 0 1 1 54.569 54.674 3 0.0009984 15727 20211116_3445_TMUAki_TMT10x_S_F6 66.674 61.395 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 990 1511 936 5262 6406 6406 2048 1 AISGVHTVR Unmodified 938.52976 0.52976379 993 P41091;Q2VIR3;Q2VIR3-2 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 0 0 0 0 By MS/MS 3 0 1 1 28.048 27.765 3 0.0018745 8215 20211116_3441_TMUAki_TMT10x_S_F3 78.556 61.46 92714 141440 0 122840 108890 87647 130560 94027 75387 84500 106670 86324 131900 7662.6 126110 104940 91604 129590 94993 80217 82920 101940 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 92714 141440 0 122840 108890 87647 130560 94027 75387 84500 106670 86324 131900 7662.6 126110 104940 91604 129590 94993 80217 82920 101940 1 1 0 1 1 1 1 1 1 1 1 7001500 0 7001500 991 993 937 5263 6407 6407 1 AISHEHSPSDLEAHFVPLVKR Unmodified 2368.2288 0.22877774 869 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 0 1 By MS/MS 7 0 1 1 44.062 44.587 6 3.7011E-06 13557 20211116_3446_TMUAki_TMT10x_S_F7 82.01 71.223 760640 1291100 14398 1381200 724630 604220 563700 967880 864000 875260 1074100 708340 1205100 75977 1391100 691630 671640 589500 962950 873290 858640 1029700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 760640 1291100 14398 1381200 724630 604220 563700 967880 864000 875260 1074100 708340 1205100 75977 1391100 691630 671640 589500 962950 873290 858640 1029700 1 1 1 1 1 1 1 1 1 1 1 37842000 0 37842000 992 869 938 5264 6408 6408 1 AISTTCIPNYPDR Unmodified 1506.7137 0.71367774 2791 Q9H2J4 PDCL3 Phosducin-like protein 3 yes yes 0 0 0 0 By MS/MS 6 0 1 1 47.175 47.335 2 8.4535E-07 12712 20211116_3445_TMUAki_TMT10x_S_F6 106.16 85.457 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 993 2791 939 5265 6409 6409 1 AITFFTEDDKPLLR Unmodified 1664.8774 0.87737225 3245 Q9Y2R4 DDX52 Probable ATP-dependent RNA helicase DDX52 yes yes 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 68.737 68.991 3 3.7458E-19 23144 20211116_3435_TMUAki_TMT10x_P_F7 171.51 143.18 26147000 42499000 202170 39040000 30368000 37186000 30922000 27118000 26127000 29024000 30862000 24345000 39643000 2103100 40044000 29124000 37771000 31188000 28137000 26957000 28268000 29625000 4 4 3 4 4 4 4 4 4 4 4 9886500 16055000 113610 15039000 10775000 19430000 11788000 11410000 11281000 11627000 11874000 9206100 14977000 937980 15479000 10364000 19343000 11889000 12013000 11519000 11347000 11436000 2 2 2 2 2 2 2 2 2 2 2 16261000 26445000 88564 24002000 19593000 17756000 19133000 15708000 14846000 17397000 18988000 15139000 24666000 1165100 24565000 18760000 18428000 19299000 16124000 15438000 16921000 18189000 2 2 1 2 2 2 2 2 2 2 2 2499800000 1737000000 762840000 994 3245 940 5266;5267;5268 6410;6411;6412;6413 6411 4 AITGASLADIMAK Oxidation (M) 1276.6697 0.66968766 1448 P83731 RPL24 60S ribosomal protein L24 yes yes 0 0 1 0 By MS/MS By MS/MS 6 0.961 5 4 3 1 5 8 57.11 57.374 2;3 6.7717E-09 16834 20211116_3445_TMUAki_TMT10x_S_F6 132.55 103.5 35369000 53776000 181530 60368000 49290000 58306000 35722000 51758000 59203000 44881000 48513000 32931000 50203000 3040800 61089000 46915000 59379000 37671000 52748000 58822000 44117000 47129000 7 7 3 7 7 7 7 7 7 7 7 17651000 25458000 91441 28945000 33923000 43682000 21512000 24927000 28934000 21746000 23464000 16434000 23768000 1602900 29502000 32209000 43170000 22700000 26196000 28916000 21370000 22805000 3 3 1 3 3 3 3 3 3 3 3 17718000 28317000 90090 31424000 15367000 14625000 14209000 26830000 30269000 23135000 25048000 16497000 26435000 1437900 31587000 14706000 16209000 14971000 26553000 29906000 22747000 24325000 4 4 2 4 4 4 4 4 4 4 4 7959800000 3585100000 4374700000 995 1448 941 5269;5270;5271;5272;5273;5274;5275;5276;5277;5278;5279;5280;5281 6414;6415;6416;6417;6418;6419;6420;6421;6422;6423;6424 6422 1952 11 AITGASLADIMAK Unmodified 1260.6748 0.67477304 1448 P83731 RPL24 60S ribosomal protein L24 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.816 4 4 4 6 6 70.847 70.911 2;3 2.1609E-25 22631 20211116_3436_TMUAki_TMT10x_P_F8 230.41 187.81 107540000 166450000 38017 186940000 115700000 98340000 110260000 43060000 29959000 51171000 101470000 100120000 155390000 7911200 187930000 110730000 104400000 109640000 46813000 36530000 49643000 95672000 12 12 4 12 12 12 12 12 12 12 12 55367000 81513000 16540 91647000 66980000 67130000 64930000 20394000 13853000 25031000 50074000 51547000 76098000 4176200 92413000 64134000 68850000 64387000 23233000 17613000 24256000 47183000 6 6 1 6 6 6 6 6 6 6 6 52174000 84937000 21477 95289000 48720000 31210000 45328000 22666000 16106000 26140000 51398000 48575000 79294000 3735000 95521000 46595000 35555000 45251000 23580000 18916000 25387000 48489000 6 6 3 6 6 6 6 6 6 6 6 14333000000 8111300000 6221300000 996 1448 941 5282;5283;5284;5285;5286;5287;5288;5289;5290;5291;5292;5293 6425;6426;6427;6428;6429;6430;6431;6432;6433;6434;6435;6436 6429 12 AITHLNNNFMFGQK Oxidation (M) 1649.7984 0.79841043 677 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 1 0 By MS/MS By MS/MS 3.23 2.19 2 4 4 1 2 6 7 49.546 49.41 3;4 5.093E-19 15229 20211116_3429_TMUAki_TMT10x_P_F2 163.51 149.83 47515000 78931000 647700 88099000 98722000 118310000 66051000 97447000 105060000 81084000 79188000 44239000 73685000 4473200 89679000 93826000 118190000 69915000 99641000 104260000 79865000 77191000 17 17 13 17 17 17 17 17 17 17 17 30734000 50896000 426790 57637000 83980000 103560000 53229000 65178000 70734000 53515000 51978000 28614000 47516000 2972700 59010000 79730000 101810000 56142000 67857000 70528000 52746000 50722000 9 9 7 9 9 9 9 9 9 9 9 16780000 28035000 220910 30462000 14742000 14747000 12822000 32269000 34328000 27569000 27210000 15625000 26169000 1500500 30669000 14096000 16386000 13773000 31784000 33730000 27119000 26469000 8 8 6 8 8 8 8 8 8 8 8 13733000000 8091900000 5641200000 997 677 942 5294;5295;5296;5297;5298;5299;5300;5301;5302;5303;5304;5305;5306 6437;6438;6439;6440;6441;6442;6443;6444;6445;6446;6447;6448;6449;6450;6451;6452;6453 6438 752 17 AITHLNNNFMFGQK Unmodified 1633.8035 0.8034958 677 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.957 1 2 2 1 4 2 54.843 54.696 3 3.4723E-19 19035 20211116_3441_TMUAki_TMT10x_S_F3 168.82 153.79 41539000 63718000 181180 79795000 70602000 65481000 53128000 28194000 26522000 29216000 47884000 38678000 59516000 3936400 80055000 67263000 66753000 53980000 30578000 28904000 28492000 45530000 8 8 4 8 8 8 8 8 8 8 8 32261000 48081000 181180 61079000 62114000 59681000 46694000 21378000 20116000 22062000 36300000 30039000 44913000 3232000 61372000 59179000 60024000 47347000 23689000 22202000 21519000 34516000 6 6 4 6 6 6 6 6 6 6 6 9278200 15638000 0 18716000 8488800 5800600 6434200 6815400 6406100 7153500 11584000 8638500 14603000 704460 18683000 8084300 6728700 6633000 6888400 6702100 6972500 11014000 2 2 0 2 2 2 2 2 2 2 2 7743700000 4799100000 2944600000 998 677 942 5307;5308;5309;5310;5311;5312 6454;6455;6456;6457;6458;6459;6460;6461 6461 8 AITIAGIPQSIIECVK Unmodified 1711.9542 0.95424237 1792 Q15366;Q15366-6;Q15366-3;Q15366-2;Q15366-4;Q15366-5;Q15366-7;Q15366-8 PCBP2 Poly(rC)-binding protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.43 2.72 4 11 2 4 11 10 59.413 59.372 2;3 2.4585E-35 27677 20211116_3439_TMUAki_TMT10x_S_F1 208.72 183.33 89127000 142060000 385140 149990000 78911000 103370000 93626000 53664000 51972000 66663000 90993000 82983000 132590000 6824200 151760000 76006000 107060000 92910000 57460000 56080000 64571000 86569000 21 22 7 21 21 21 21 21 21 22 22 43510000 65926000 58381 71999000 36363000 58208000 40210000 24644000 23784000 30944000 41798000 40509000 61539000 3160700 72815000 34941000 59395000 40077000 26939000 25554000 29962000 39763000 8 9 2 8 8 8 8 8 8 9 9 45618000 76139000 326760 77993000 42548000 45159000 53416000 29020000 28188000 35720000 49195000 42474000 71053000 3663500 78943000 41065000 47667000 52833000 30521000 30526000 34610000 46806000 13 13 5 13 13 13 13 13 13 13 13 12133000000 6906100000 5227100000 999 1792 943 5313;5314;5315;5316;5317;5318;5319;5320;5321;5322;5323;5324;5325;5326;5327;5328;5329;5330;5331;5332;5333 6462;6463;6464;6465;6466;6467;6468;6469;6470;6471;6472;6473;6474;6475;6476;6477;6478;6479;6480;6481;6482;6483;6484 6475 23 AITIAGR Unmodified 700.42317 0.42317345 1691 Q14194-2;Q14194 CRMP1 Dihydropyrimidinase-related protein 1 yes no 0 0 0 0 By MS/MS 5 0 1 1 33.875 34.052 2 0.041051 7150 20211116_3444_TMUAki_TMT10x_S_F5 73.975 47.179 375000 620150 2316.7 630730 416440 369170 404410 397040 401250 378210 513620 349180 578710 33830 638790 399140 392840 410740 401720 412330 370160 491990 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 375000 620150 2316.7 630730 416440 369170 404410 397040 401250 378210 513620 349180 578710 33830 638790 399140 392840 410740 401720 412330 370160 491990 1 1 1 1 1 1 1 1 1 1 1 9901900 0 9901900 1000 1691 944 5334 6485 6485 1 AITIAGVPQSVTECVK Unmodified 1671.8866 0.88655673 1791 Q15365 PCBP1 Poly(rC)-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.8 0.748 4 4 2 5 5 62.991 63.269 2;3 8.9082E-43 21226 20211116_3446_TMUAki_TMT10x_S_F7 232.25 205.47 66893000 112070000 427890 120450000 74357000 99839000 70999000 76132000 65973000 73068000 80231000 62284000 104600000 5689500 121980000 71215000 102450000 72037000 78510000 67843000 71489000 76954000 12 12 9 12 12 12 12 12 12 12 12 36919000 59556000 159560 64458000 48183000 68530000 43684000 41565000 34441000 37998000 41552000 34374000 55590000 3075800 65472000 46078000 68957000 44260000 43514000 35695000 37258000 39864000 6 6 4 6 6 6 6 6 6 6 6 29974000 52512000 268330 55991000 26174000 31308000 27314000 34567000 31533000 35070000 38678000 27910000 49013000 2613700 56505000 25138000 33491000 27777000 34996000 32148000 34231000 37090000 6 6 5 6 6 6 6 6 6 6 6 14816000000 7263500000 7553000000 1001 1791 945 5335;5336;5337;5338;5339;5340;5341;5342;5343;5344 6486;6487;6488;6489;6490;6491;6492;6493;6494;6495;6496;6497;6498;6499 6497 14 AITIANQTNCPLYITK Unmodified 1819.9502 0.95021962 1852 Q16555;Q16555-2 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 2.73 2.53 4 5 2 5 6 63.499 63.357 2;3 3.8481E-70 19739 20211116_3440_TMUAki_TMT10x_S_F2 314.76 290.77 68992000 117900000 319680 126280000 87225000 111700000 74403000 87251000 73341000 76077000 84294000 64235000 110050000 5550500 128020000 83285000 114140000 76108000 89611000 75047000 74761000 80976000 15 15 8 15 15 15 15 15 15 15 15 40883000 68556000 149030 72778000 60940000 86475000 50918000 49186000 44216000 43541000 49839000 38063000 63985000 3310400 74152000 58156000 86412000 51965000 51722000 45475000 42757000 47904000 7 7 3 7 7 7 7 7 7 7 7 28109000 49345000 170640 53506000 26285000 25226000 23484000 38065000 29125000 32536000 34454000 26172000 46060000 2240100 53868000 25129000 27731000 24142000 37889000 29572000 32004000 33072000 8 8 5 8 8 8 8 8 8 8 8 24726000000 14097000000 10628000000 1002 1852 946 5345;5346;5347;5348;5349;5350;5351;5352;5353;5354;5355 6500;6501;6502;6503;6504;6505;6506;6507;6508;6509;6510;6511;6512;6513;6514;6515 6513 16 AITIASQTNCPLYVTK Unmodified 1778.9237 0.92367052 1692 Q14195-2;Q14195 DPYSL3 Dihydropyrimidinase-related protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 60.873 60.756 2;3 5.3391E-45 18708 20211116_3440_TMUAki_TMT10x_S_F2 206.69 182.94 16731000 26720000 65383 25700000 17875000 28827000 18457000 20290000 19689000 20602000 20244000 15579000 24928000 1411000 26337000 17155000 28983000 18729000 21069000 19996000 20108000 19511000 4 4 2 4 4 4 4 4 4 4 4 10151000 15435000 65383 14363000 10800000 22564000 12288000 12165000 11864000 12448000 11605000 9451700 14399000 911590 14851000 10397000 22248000 12373000 12902000 12078000 12145000 11203000 2 2 2 2 2 2 2 2 2 2 2 6580700 11284000 0 11337000 7074600 6262900 6169200 8124500 7825800 8154600 8638600 6126800 10530000 499390 11486000 6757300 6735100 6356300 8167400 7917700 7963000 8308100 2 2 0 2 2 2 2 2 2 2 2 1684200000 856570000 827610000 1003 1692 947 5356;5357;5358 6516;6517;6518;6519;6520 6520 5 AITPQAQEELQKQER Unmodified 1767.9115 0.91152593 1501 Q02952;Q02952-3;Q02952-2 AKAP12 A-kinase anchor protein 12 yes no 0 0 0 1 By MS/MS 4 0 1 1 37.693 37.727 3 2.0857E-24 9496 20211116_3431_TMUAki_TMT10x_P_F4 195.92 169.8 797950 1351200 0 1304300 4326500 3898100 1860200 2569100 3138800 1650900 1910000 742830 1260700 98006 1372700 4085300 3781200 2055400 2651600 3093700 1650200 1880500 2 2 0 2 2 2 2 2 2 2 2 797950 1351200 0 1304300 4326500 3898100 1860200 2569100 3138800 1650900 1910000 742830 1260700 98006 1372700 4085300 3781200 2055400 2651600 3093700 1650200 1880500 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 103520000 103520000 0 1004 1501 948 5359 6521;6522 6522 2 AITTGLQEYVEAVSFQHFIK Unmodified 2280.179 0.17903358 2587 Q99598 TSNAX Translin-associated protein X yes yes 0 0 0 0 By MS/MS 8 0 1 1 79.101 79.071 3 0.10178 25462 20211116_3447_TMUAki_TMT10x_S_F8 23.132 8.3628 2099600 3356600 0 3139000 2797100 2770800 2922200 2410500 2276800 2497400 2672900 1954200 3131300 93075 3212200 2679200 2837400 2937600 2471700 2358500 2435600 2566200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2099600 3356600 0 3139000 2797100 2770800 2922200 2410500 2276800 2497400 2672900 1954200 3131300 93075 3212200 2679200 2837400 2937600 2471700 2358500 2435600 2566200 1 1 0 1 1 1 1 1 1 1 1 598240000 0 598240000 1005 2587 949 5360 6523 6523 1 AITTLPR Unmodified 770.46504 0.46503826 2740 Q9BZJ0;Q9BZJ0-2;Q9BZJ0-3 CRNKL1 Crooked neck-like protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.8 1.17 1 1 1 2 4 1 35.137 35.381 2 0.0061787 8194 20211116_3436_TMUAki_TMT10x_P_F8 104.76 51.579 1629800 2615100 77401 2666000 2254800 2402500 1996600 1486100 1509000 1449700 2219800 1518100 2440300 216010 2712200 2160200 2443100 2023700 1556100 1581700 1417400 2119300 4 4 4 4 4 4 4 4 4 4 4 1078000 1711100 52921 1699200 1718700 1942800 1329000 964050 995600 977970 1460200 1004100 1596600 147670 1738000 1641300 1942100 1358200 1030000 1043900 954560 1394200 3 3 3 3 3 3 3 3 3 3 3 551740 904030 24480 966780 536100 459700 667590 522020 513370 471760 759560 513900 843790 68338 974260 518820 500990 665520 526100 537750 462810 725100 1 1 1 1 1 1 1 1 1 1 1 31297000 26108000 5189900 1006 2740 950 5361;5362;5363;5364;5365 6524;6525;6526;6527 6526 4 AIVAIENPADVSVISSR Unmodified 1739.9418 0.94176342 565 P08865 RPSA 40S ribosomal protein SA yes yes 0 0 0 0 By MS/MS By MS/MS 5.32 1.58 1 4 4 5 4 10 17 11 50.933 50.9 2;3 2.5076E-93 20839 20211116_3431_TMUAki_TMT10x_P_F4 342.51 296.91 90174000 150600000 838730 143990000 107490000 145690000 100570000 95051000 88663000 95755000 110470000 83960000 140500000 7674200 147390000 102890000 147170000 102010000 99218000 91494000 93491000 105890000 36 36 17 36 36 36 36 36 36 36 36 54960000 92153000 514270 88671000 66828000 113450000 66413000 58147000 54760000 59006000 67515000 51174000 85975000 4805700 91076000 64073000 112800000 67027000 61936000 56671000 57593000 64734000 25 25 12 25 25 25 25 25 25 25 25 35214000 58451000 324460 55323000 40666000 32240000 34161000 36904000 33903000 36749000 42950000 32787000 54529000 2868500 56314000 38821000 34373000 34983000 37282000 34823000 35898000 41152000 11 11 5 11 11 11 11 11 11 11 11 54937000000 28510000000 26427000000 1007 565 951 5366;5367;5368;5369;5370;5371;5372;5373;5374;5375;5376;5377;5378;5379;5380;5381;5382;5383;5384;5385;5386;5387;5388;5389;5390;5391;5392;5393 6528;6529;6530;6531;6532;6533;6534;6535;6536;6537;6538;6539;6540;6541;6542;6543;6544;6545;6546;6547;6548;6549;6550;6551;6552;6553;6554;6555;6556;6557;6558;6559;6560;6561;6562;6563;6564;6565;6566;6567;6568 6534 41 AIVDALPPPCESACTVPTDVDK Unmodified 2354.1134 0.11339814 1777 Q15181 PPA1 Inorganic pyrophosphatase yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 0.816 1 2 5 1 6 3 55.087 55.16 3;4 0.0010731 20635 20211116_3431_TMUAki_TMT10x_P_F4 63.869 53.53 33339000 53561000 406020 62277000 34635000 45004000 35447000 30240000 30680000 33971000 38045000 31044000 50011000 3083200 62659000 33249000 46580000 35766000 31602000 31682000 33024000 36473000 10 10 8 10 10 10 10 10 10 10 10 17280000 26599000 219730 31302000 20548000 31450000 20943000 15721000 16046000 17863000 19869000 16091000 24837000 1682600 31603000 19726000 31677000 21072000 16842000 16674000 17358000 19048000 6 6 5 6 6 6 6 6 6 6 6 16059000 26962000 186290 30974000 14086000 13553000 14504000 14519000 14634000 16108000 18177000 14953000 25173000 1400600 31055000 13523000 14904000 14694000 14761000 15007000 15666000 17425000 4 4 3 4 4 4 4 4 4 4 4 4183900000 2526600000 1657300000 1008 1777 952 5394;5395;5396;5397;5398;5399;5400;5401;5402 6569;6570;6571;6572;6573;6574;6575;6576;6577;6578;6579;6580;6581 6571 13 AIVDALPPPCESACTVPTDVDKWFHHQK Unmodified 3217.5325 0.53248926 1777 Q15181 PPA1 Inorganic pyrophosphatase yes yes 0 0 0 1 By matching By MS/MS 7 0 2 1 1 66.939 67.411 5 0.0053265 22927 20211116_3446_TMUAki_TMT10x_S_F7 45.546 38.897 3459800 6648600 46169 4846800 7408400 5124800 4574500 5836800 4622300 5344500 5729200 3221700 6197100 385170 5076000 7035100 5219700 4789700 5883800 4739600 5240000 5492400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3459800 6648600 46169 4846800 7408400 5124800 4574500 5836800 4622300 5344500 5729200 3221700 6197100 385170 5076000 7035100 5219700 4789700 5883800 4739600 5240000 5492400 1 1 1 1 1 1 1 1 1 1 1 2232300000 1244900000 987380000 1009 1777 953 5403;5404 6582 6582 1 AIVDCGFEHPSEVQHECIPQAILGMDVLCQAK Unmodified 3650.699 0.69897902 1665;63 O00148;O00148-2;O00148-3;Q13838;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B no no 0 0 0 0 By MS/MS By matching 6 0 2 1 1 76.623 76.582 5 0.0014431 24360 20211116_3434_TMUAki_TMT10x_P_F6 53.968 47.392 2573300 4222600 95548 4089100 2212600 4839200 2803700 3005700 2690100 2824300 3202300 2396700 3939700 297340 4192200 2142200 4842400 2809500 3143100 2759900 2765900 3073300 1 1 1 1 1 1 1 1 1 1 1 2573300 4222600 95548 4089100 2212600 4839200 2803700 3005700 2690100 2824300 3202300 2396700 3939700 297340 4192200 2142200 4842400 2809500 3143100 2759900 2765900 3073300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1234100000 661050000 573080000 1010 63;1665 954 5405;5406 6583 6583 1 AIVDCIISIVEENPESK Unmodified 1914.9608 0.96084389 3077 Q9UBF2;Q9UBF2-2 COPG2 Coatomer subunit gamma-2 yes no 0 0 0 0 By MS/MS By MS/MS 3 1 1 1 1 1 82.01 81.998 3 2.3306E-08 27308 20211116_3440_TMUAki_TMT10x_S_F2 118.47 94.183 940420 1500900 0 1458400 1286800 1168400 1245000 873280 852330 914920 1185600 875600 1400300 80348 1486500 1232600 1201500 1252900 904030 896110 891840 1133400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 940420 1500900 0 1458400 1286800 1168400 1245000 873280 852330 914920 1185600 875600 1400300 80348 1486500 1232600 1201500 1252900 904030 896110 891840 1133400 1 1 0 1 1 1 1 1 1 1 1 134050000 0 134050000 1011 3077 955 5407;5408 6584;6585 6585 2 AIVEFLSNLAR Unmodified 1231.6925 0.69247202 1594 Q13112 CHAF1B Chromatin assembly factor 1 subunit B yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 80.515 80.519 2 2.6572E-14 27145 20211116_3433_TMUAki_TMT10x_P_F5 185.27 142.23 17835000 28122000 154180 26793000 16709000 26852000 19317000 14606000 14058000 16432000 19836000 16606000 26236000 1468400 27428000 16087000 27076000 19295000 15523000 14737000 15973000 18956000 4 4 3 4 4 4 4 4 4 4 4 14184000 21734000 86487 20871000 12696000 22918000 14868000 11447000 11076000 13046000 15562000 13207000 20276000 1097600 21383000 12224000 22963000 14850000 12266000 11593000 12676000 14873000 3 3 2 3 3 3 3 3 3 3 3 3650700 6388900 67698 5921900 4012800 3933900 4448800 3159000 2982000 3385200 4274100 3399700 5959800 370830 6044600 3862700 4112800 4444400 3257700 3143700 3296900 4083100 1 1 1 1 1 1 1 1 1 1 1 2934000000 1679600000 1254400000 1012 1594 956 5409;5410;5411;5412;5413;5414 6586;6587;6588;6589;6590 6587 5 AIVFRPFKGEVVDAVVTQVNK Unmodified 2315.3002 0.30015177 1359 P62487 POLR2G DNA-directed RNA polymerase II subunit RPB7 yes yes 0 0 0 2 By MS/MS 4 0 1 1 70.392 70.462 4 1.3428E-13 22743 20211116_3431_TMUAki_TMT10x_P_F4 126.84 117.91 9856200 15557000 414950 15517000 9911300 17756000 10841000 10433000 8647400 9629900 11777000 9180100 14516000 1204600 15866000 9551900 17786000 10880000 10953000 9004300 9438100 11264000 2 2 2 2 2 2 2 2 2 2 2 9856200 15557000 414950 15517000 9911300 17756000 10841000 10433000 8647400 9629900 11777000 9180100 14516000 1204600 15866000 9551900 17786000 10880000 10953000 9004300 9438100 11264000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1076900000 1076900000 0 1013 1359 957 5415 6591;6592 6591 2 AIVPLEAR Unmodified 867.5178 0.51780212 132 O14776;O14776-2 TCERG1 Transcription elongation regulator 1 yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 43.22 43.263 2 0.0063916 12007 20211116_3442_TMUAki_TMT10x_S_F4 92.467 71.912 13591000 22448000 177090 23817000 22212000 25124000 15418000 25792000 24359000 21627000 21134000 12656000 20951000 1412600 24220000 21138000 25529000 16272000 26065000 24275000 21294000 20487000 6 6 6 6 6 6 6 6 6 6 6 6971000 10781000 97023 11492000 15361000 18888000 9397500 13584000 12712000 11082000 10235000 6491400 10062000 785870 11784000 14584000 18667000 9946700 14005000 12699000 10927000 9950200 3 3 3 3 3 3 3 3 3 3 3 6619600 11667000 80068 12325000 6851800 6235900 6020800 12207000 11647000 10545000 10899000 6164100 10889000 626690 12436000 6553800 6862500 6324800 12060000 11576000 10367000 10537000 3 3 3 3 3 3 3 3 3 3 3 592160000 312490000 279670000 1014 132 958 5416;5417;5418;5419;5420;5421 6593;6594;6595;6596;6597 6596 5 AIVQLVNER Unmodified 1040.5978 0.59784335 1770 Q15102 PAFAH1B3 Platelet-activating factor acetylhydrolase IB subunit gamma yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 48.293 48.442 2 6.0977E-06 12800 20211116_3434_TMUAki_TMT10x_P_F6 161.86 86.621 13743000 21865000 77687 27036000 24528000 22992000 14955000 19333000 20639000 17301000 20872000 12795000 20422000 1248800 27156000 23275000 23590000 15846000 19780000 20756000 16980000 20127000 4 4 2 4 4 4 4 4 4 4 4 6463800 10679000 51225 12806000 18204000 17164000 9393700 9131000 9594200 8018100 9967000 6018800 9972300 746380 12979000 17236000 17036000 9995300 9655900 9764900 7876700 9603300 2 2 1 2 2 2 2 2 2 2 2 7278700 11187000 26462 14230000 6324000 5828400 5561300 10202000 11044000 9282500 10905000 6776500 10450000 502420 14177000 6038900 6554100 5850700 10124000 10991000 9103700 10524000 2 2 1 2 2 2 2 2 2 2 2 1023100000 621840000 401260000 1015 1770 959 5422;5423;5424;5425 6598;6599;6600;6601 6599 4 AIVQQWLEYR Unmodified 1304.6877 0.68772099 209 O43324;O43324-2 EEF1E1 Eukaryotic translation elongation factor 1 epsilon-1 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 70.271 70.048 2 2.9959E-05 23750 20211116_3429_TMUAki_TMT10x_P_F2 136.33 95.601 10995000 18954000 32.955 17539000 13102000 13579000 13123000 8220100 7331400 9878100 12393000 10237000 17681000 839160 17933000 12556000 13957000 13130000 8677700 7891400 9579200 11798000 3 3 1 3 3 3 3 3 3 3 3 3963200 6561000 32.955 6410400 4875400 7024700 5558200 2887400 2606500 3424400 4218000 3690200 6121600 341380 6559400 4691900 7025500 5510900 3160500 2838000 3322300 4019000 1 1 1 1 1 1 1 1 1 1 1 7031900 12393000 0 11128000 8226400 6554500 7564300 5332800 4724900 6453700 8174800 6546600 11560000 497770 11374000 7864600 6931900 7619500 5517200 5053400 6256800 7779200 2 2 0 2 2 2 2 2 2 2 2 984140000 517610000 466530000 1016 209 960 5426;5427 6602;6603;6604 6602 3 AIYAYALQVFPSKK Unmodified 1597.8868 0.88681473 395 O94906;O94906-2 PRPF6 Pre-mRNA-processing factor 6 yes no 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 71.667 71.744 3 5.879E-15 22475 20211116_3434_TMUAki_TMT10x_P_F6 143.98 123.02 24563000 42214000 571960 38862000 31809000 23062000 25948000 26220000 21480000 24229000 30392000 22875000 39377000 2671000 39646000 30387000 24540000 26489000 26440000 22364000 23746000 29042000 5 5 5 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24563000 42214000 571960 38862000 31809000 23062000 25948000 26220000 21480000 24229000 30392000 22875000 39377000 2671000 39646000 30387000 24540000 26489000 26440000 22364000 23746000 29042000 5 5 5 5 5 5 5 5 5 5 5 1196100000 0 1196100000 1017 395 961 5428;5429;5430;5431 6605;6606;6607;6608;6609;6610;6611 6605 7 AIYDTPCIQAESEK Unmodified 1623.745 0.74503745 74 O00232;O00232-2 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 50.864 51.027 3 1.5805E-06 15277 20211116_3442_TMUAki_TMT10x_S_F4 90.412 71.089 3359400 4317700 8171.1 6457400 6675200 6624700 4043600 3549900 3981400 3330700 3566500 3128000 4036900 332570 6439000 6334800 6669300 4237300 3757900 4038400 3262000 3453300 1 1 1 1 1 1 1 1 1 1 1 3359400 4317700 8171.1 6457400 6675200 6624700 4043600 3549900 3981400 3330700 3566500 3128000 4036900 332570 6439000 6334800 6669300 4237300 3757900 4038400 3262000 3453300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 355440000 355440000 0 1018 74 962 5432;5433 6612;6613 6613 2 AIYELAISQPR Unmodified 1259.6874 0.68738664 2740 Q9BZJ0;Q9BZJ0-2;Q9BZJ0-3 CRNKL1 Crooked neck-like protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 57.959 58.587 2 3.5841E-06 18783 20211116_3435_TMUAki_TMT10x_P_F7 121.5 80.313 14797000 23499000 262000 25356000 20735000 27553000 18244000 18505000 17436000 17247000 19149000 13778000 21934000 1407600 25769000 19826000 27730000 18611000 19233000 17834000 16896000 18420000 3 3 2 3 3 3 3 3 3 3 3 11148000 17218000 188840 18839000 16678000 24085000 14617000 13475000 12876000 12759000 14155000 10380000 16072000 1031200 19182000 15942000 23974000 14880000 14214000 13221000 12490000 13615000 2 2 1 2 2 2 2 2 2 2 2 3648900 6280700 73159 6517200 4057500 3468000 3627500 5029900 4559900 4488000 4994500 3398000 5861400 376420 6586300 3884100 3756200 3730900 5019000 4613600 4405500 4804600 1 1 1 1 1 1 1 1 1 1 1 1194100000 421000000 773080000 1019 2740 963 5434;5435 6614;6615;6616 6615 3 AIYFDGDFGQIVR Unmodified 1499.7409 0.74087877 2543 Q96RP9 GFM1 Elongation factor G, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.632 1 3 1 3 2 74.429 74.355 2 2.9332E-19 23829 20211116_3445_TMUAki_TMT10x_S_F6 193.83 165.43 5697800 9910900 156600 8371400 7354600 5728200 6882600 5094300 5175900 5346200 6690800 5306400 9242100 641530 8609400 7049600 5984300 6953100 5219100 5394100 5211000 6407500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5697800 9910900 156600 8371400 7354600 5728200 6882600 5094300 5175900 5346200 6690800 5306400 9242100 641530 8609400 7049600 5984300 6953100 5219100 5394100 5211000 6407500 2 2 2 2 2 2 2 2 2 2 2 354930000 0 354930000 1020 2543 964 5436;5437;5438;5439;5440 6617;6618;6619;6620;6621;6622 6621 6 AIYHDLEQSIR Unmodified 1343.6834 0.68336389 3190 Q9UNF0;Q9UNF0-2 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 45.757 45.742 3 1.0688E-17 12968 20211116_3442_TMUAki_TMT10x_S_F4 186.24 164.04 4329200 6960800 25133 7548200 6043500 6294900 4659000 6501500 6144600 5991500 6249600 4030700 6497400 345210 7640100 5757500 6494700 4844200 6584500 6189800 5872700 6025500 6 6 4 6 6 6 6 6 6 6 6 1659200 2488500 4684.6 2653200 3430200 3975900 2340300 2404500 2449100 2312800 2318700 1544600 2322600 133180 2714800 3259700 3933500 2434200 2521300 2482100 2262500 2240800 2 2 1 2 2 2 2 2 2 2 2 2670000 4472400 20448 4895000 2613300 2318900 2318600 4097000 3695500 3678800 3930900 2486000 4174800 212030 4925300 2497800 2561200 2409900 4063300 3707700 3610100 3784700 4 4 3 4 4 4 4 4 4 4 4 882320000 506690000 375630000 1021 3190 965 5441;5442;5443;5444;5445 6623;6624;6625;6626;6627;6628;6629 6628 7 AKADALYPVVSAASICAK Unmodified 1833.9659 0.96586969 358 O75792 RNASEH2A Ribonuclease H2 subunit A yes yes 0 0 0 1 By MS/MS 2 0 1 1 61.456 61.176 3 2.39E-08 20177 20211116_3429_TMUAki_TMT10x_P_F2 114.4 97.322 1991000 3154800 0 3161500 2632700 4380000 2513500 2541400 2380700 2337000 2328100 1853500 2943800 132580 3243000 2518700 4345600 2551700 2670600 2425900 2290800 2247400 1 1 0 1 1 1 1 1 1 1 1 1991000 3154800 0 3161500 2632700 4380000 2513500 2541400 2380700 2337000 2328100 1853500 2943800 132580 3243000 2518700 4345600 2551700 2670600 2425900 2290800 2247400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 547810000 547810000 0 1022 358 966 5446 6630 6630 1 AKAGAGSATLSMAYAGAR Oxidation (M) 1668.8254 0.82535346 989 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 1 1 By MS/MS 1 0 1 1 34.936 34.936 3 2.2763E-07 7957 20211116_3428_TMUAki_TMT10x_P_F1 101.92 85.304 190500 347920 3715.7 283500 645420 679200 333250 411900 500860 307900 361270 177410 324400 25628 299680 611240 661510 359540 429170 497250 305000 352820 1 1 1 1 1 1 1 1 1 1 1 190500 347920 3715.7 283500 645420 679200 333250 411900 500860 307900 361270 177410 324400 25628 299680 611240 661510 359540 429170 497250 305000 352820 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50271000 50271000 0 1023 989 967 5447 6631 6631 1269 1 AKAGAGSATLSMAYAGAR Unmodified 1652.8304 0.83043884 989 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 0 1 By MS/MS 3 0 1 1 40.746 40.444 3 1.565E-22 13221 20211116_3441_TMUAki_TMT10x_S_F3 160.47 146.75 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1024 989 967 5448 6632 6632 1 AKCELSSSVQTDINLPYLTMDSSGPK Oxidation (M) 2856.3521 0.35212486 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 1 1 By MS/MS By MS/MS 6.62 0.857 1 2 4 1 5 3 66.004 66.324 3;4 2.335E-23 22464 20211116_3446_TMUAki_TMT10x_S_F7 145.89 127.98 16887000 29992000 245230 25904000 21008000 31857000 20980000 24322000 23767000 25285000 23296000 15724000 27971000 1415700 26804000 20151000 31918000 21369000 25138000 24041000 24655000 22487000 9 9 5 9 9 9 9 9 9 9 9 10327000 18182000 179500 15871000 11754000 23771000 12925000 14472000 14493000 15309000 13589000 9616400 16957000 812510 16472000 11307000 23520000 13097000 15209000 14643000 14917000 13136000 5 5 2 5 5 5 5 5 5 5 5 6559700 11811000 65728 10033000 9253600 8086800 8055800 9850100 9274300 9976100 9707000 6107900 11014000 603220 10332000 8844000 8398000 8271700 9929700 9397100 9738000 9350600 4 4 3 4 4 4 4 4 4 4 4 12793000000 6729100000 6063800000 1025 972 968 5449;5450;5451;5452;5453;5454;5455;5456 6633;6634;6635;6636;6637;6638;6639;6640;6641;6642 6641 1230 10 AKCELSSSVQTDINLPYLTMDSSGPK Unmodified 2840.3572 0.35721024 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 7.33 0.471 4 2 3 3 70.922 71.116 3;4 1.7602E-30 22232 20211116_3447_TMUAki_TMT10x_S_F8 172.61 148.15 23804000 38427000 261670 36744000 24899000 28608000 28941000 16778000 14383000 18447000 28039000 22166000 35850000 2217900 37482000 23991000 29380000 28694000 17706000 15753000 17947000 26626000 8 8 6 8 8 8 8 8 8 8 8 13306000 20442000 155540 20257000 11751000 18505000 15718000 8363400 6852000 9263300 15862000 12390000 19074000 1211500 20652000 11375000 18732000 15461000 9042100 7678400 9010000 15022000 4 4 2 4 4 4 4 4 4 4 4 10498000 17985000 106130 16487000 13148000 10103000 13223000 8414800 7530600 9183600 12178000 9775600 16776000 1006400 16829000 12615000 10648000 13233000 8663900 8075100 8937500 11604000 4 4 4 4 4 4 4 4 4 4 4 9046100000 4660100000 4385900000 1026 972 968 5457;5458;5459;5460;5461;5462 6643;6644;6645;6646;6647;6648;6649;6650 6650 8 AKDDSELEGQVISCLK Unmodified 1790.872 0.87202888 2375 Q92896;Q92896-2;Q92896-3 GLG1 Golgi apparatus protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 59.22 59.351 3 5.6176E-07 18200 20211116_3431_TMUAki_TMT10x_P_F4 102.08 85.006 9001000 14238000 151210 15820000 15450000 21055000 12390000 9941300 9601100 9457200 11495000 8381900 13292000 977490 16105000 14747000 20877000 12641000 10654000 9956700 9256300 11031000 2 2 2 2 2 2 2 2 2 2 2 9001000 14238000 151210 15820000 15450000 21055000 12390000 9941300 9601100 9457200 11495000 8381900 13292000 977490 16105000 14747000 20877000 12641000 10654000 9956700 9256300 11031000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 717990000 717990000 0 1027 2375 969 5463;5464 6651;6652;6653 6651 3 AKDIVPGDIVEIAVGDKVPADIR Unmodified 2389.3217 0.32167507 697 P16615;P16615-5;P16615-2;P16615-3 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 0 2 By MS/MS By MS/MS 6.5 1.12 2 2 2 2 4 4 75.39 75.403 4 1.9542E-15 24531 20211116_3436_TMUAki_TMT10x_P_F8 134.76 119.5 73505000 122290000 595540 104800000 81184000 110470000 86845000 72869000 69523000 73085000 87460000 68438000 114040000 5888900 108240000 77965000 111340000 87259000 75993000 72122000 71370000 83814000 12 12 5 12 12 12 12 12 12 12 12 43736000 71432000 296060 59526000 39980000 77505000 49347000 41986000 40156000 42890000 48729000 40720000 66609000 3318600 61836000 38554000 77050000 49280000 44509000 41559000 41852000 46741000 6 6 1 6 6 6 6 6 6 6 6 29770000 50857000 299480 45278000 41204000 32963000 37498000 30883000 29366000 30195000 38731000 27718000 47434000 2570300 46401000 39412000 34294000 37978000 31484000 30563000 29518000 37073000 6 6 4 6 6 6 6 6 6 6 6 16097000000 7824600000 8272300000 1028 697 970 5465;5466;5467;5468;5469;5470;5471;5472 6654;6655;6656;6657;6658;6659;6660;6661;6662;6663;6664;6665 6659 12 AKDLIVTPATILK Unmodified 1381.8545 0.85445197 1223 P54687;P54687-5;P54687-3;P54687-4;P54687-2 BCAT1 Branched-chain-amino-acid aminotransferase, cytosolic yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 64.398 64.131 3 5.4487E-09 21316 20211116_3429_TMUAki_TMT10x_P_F2 122.34 71.121 7160900 12691000 67634 10039000 11900000 16362000 10412000 14697000 14169000 13114000 12121000 6667600 11832000 682650 10524000 11374000 16241000 10756000 14979000 14177000 12873000 11756000 2 2 1 2 2 2 2 2 2 2 2 4101900 7224100 0 5697400 7860000 12795000 7352400 8434100 8122700 7174900 6658300 3819000 6735100 352270 6026300 7521100 12499000 7508200 8757600 8177800 7059200 6468400 1 1 0 1 1 1 1 1 1 1 1 3058900 5466500 67634 4342000 4039700 3567100 3059800 6262700 6046100 5939000 5462600 2848700 5096600 330370 4497400 3852900 3742300 3247400 6221800 5999500 5813700 5287700 1 1 1 1 1 1 1 1 1 1 1 2657100000 1672500000 984630000 1029 1223 971 5473;5474 6666;6667 6666 2 AKDPFAHLPK Unmodified 1122.6186 0.61857879 821 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 1 By MS/MS By MS/MS 4.82 3.33 4 1 1 5 6 5 41.441 41.511 3;4 5.513E-05 10605 20211116_3436_TMUAki_TMT10x_P_F8 94.767 61.543 84773000 127430000 3505300 156620000 177400000 181110000 101490000 116540000 112900000 104770000 131420000 78957000 119010000 11497000 157610000 168400000 181540000 106420000 120680000 114910000 102810000 126200000 12 12 11 11 12 12 11 11 11 12 12 63322000 93989000 3280400 113770000 157400000 162910000 82421000 84089000 78124000 78459000 97838000 58982000 87776000 9529100 114930000 149230000 161160000 86549000 88590000 80266000 76859000 93770000 6 6 5 5 6 6 5 5 5 6 6 21451000 33440000 224960 42851000 19999000 18202000 19066000 32447000 34775000 26310000 33581000 19975000 31239000 1967800 42682000 19167000 20383000 19874000 32087000 34648000 25948000 32431000 6 6 6 6 6 6 6 6 6 6 6 13476000000 9625100000 3850700000 1030 821 972 5475;5476;5477;5478;5479;5480;5481;5482;5483;5484;5485 6668;6669;6670;6671;6672;6673;6674;6675;6676;6677;6678 6672 11 AKEALELTDTGLLSGSEER Unmodified 2018.0168 0.016778861 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 60.423 60.422 3 9.0178E-41 18650 20211116_3431_TMUAki_TMT10x_P_F4 203.71 189.01 6149600 10990000 15514 8735000 9332800 11931000 7821000 11243000 11091000 10099000 9566500 5726000 10247000 568890 9118200 8911700 11941000 8113500 11432000 11086000 9910500 9275700 3 3 3 3 3 3 3 3 3 3 3 2352600 4208700 47.24 3349200 3931900 7289800 4071000 4627500 4453600 4029100 3769600 2190500 3924000 217210 3536300 3773600 7123500 4133900 4821400 4489800 3959700 3657500 1 1 1 1 1 1 1 1 1 1 1 3797000 6781700 15467 5385800 5400900 4640700 3750100 6615400 6637000 6070100 5797000 3535500 6322900 351680 5581900 5138000 4818000 3979500 6610100 6595800 5950800 5618100 2 2 2 2 2 2 2 2 2 2 2 1126600000 528050000 598520000 1031 1695 973 5486;5487;5488 6679;6680;6681;6682 6679 4 AKECEPPSAGAAVTARPGQEIR Unmodified 2294.1437 0.14372748 2749 Q9C0E8;Q9C0E8-3;Q9C0E8-2;Q9C0E8-4 LNP Protein lunapark yes no 0 0 0 2 By MS/MS 5 0 1 1 32.969 32.914 4 3.0648E-14 7866 20211116_3433_TMUAki_TMT10x_P_F5 134.62 121.3 255630 468860 0 439270 927670 763690 359380 498290 515780 389800 426510 237930 437390 20069 455070 874520 752020 399090 516770 514700 385170 414200 1 1 0 1 1 1 1 1 1 1 1 255630 468860 0 439270 927670 763690 359380 498290 515780 389800 426510 237930 437390 20069 455070 874520 752020 399090 516770 514700 385170 414200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 60188000 60188000 0 1032 2749 974 5489 6683 6683 1 AKEEELR Unmodified 873.4556 0.45559579 1538 Q07666;Q07666-2;Q5VWX1;O75525;O75525-2;Q9UBC1;Q9H6N6;Q9UBC1-2;Q9UBC1-3 KHDRBS1;KHDRBS2;KHDRBS3;NFKBIL1;MYH16 KH domain-containing, RNA-binding, signal transduction-associated protein 1;KH domain-containing, RNA-binding, signal transduction-associated protein 2;KH domain-containing, RNA-binding, signal transduction-associated protein 3;NF-kappa-B inhibitor-like protein 1;Putative uncharacterized protein MYH16 yes no 0 0 0 1 By MS/MS 3 0 1 1 28.413 28.139 3 0.052553 8345 20211116_3441_TMUAki_TMT10x_S_F3 54.608 17.914 510090 858340 0 613250 629580 638870 700880 354040 404940 390440 603530 474910 800010 40034 643310 605200 642850 698040 375430 431950 379820 576050 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 510090 858340 0 613250 629580 638870 700880 354040 404940 390440 603530 474910 800010 40034 643310 605200 642850 698040 375430 431950 379820 576050 1 1 0 1 1 1 1 1 1 1 1 15822000 0 15822000 1033 1538 975 5490 6684 6684 1 AKEELIFHCGFR Unmodified 1505.7449 0.74491829 1878 Q2NL82 TSR1 Pre-rRNA-processing protein TSR1 homolog yes yes 0 0 0 1 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 46.132 46.452 4 0.01122 12219 20211116_3447_TMUAki_TMT10x_S_F8 60.628 44.404 17095000 28872000 206360 31223000 32112000 22560000 18665000 14835000 10320000 12948000 21496000 15918000 26949000 1657500 31557000 30455000 23344000 19377000 15416000 11261000 12723000 20391000 4 4 3 4 4 4 4 4 4 4 4 8613800 14396000 0 14407000 19493000 17617000 12042000 6549800 4560000 6021100 9852900 8019000 13433000 704060 14745000 18493000 17500000 12372000 7202100 5154200 5902300 9340900 1 1 0 1 1 1 1 1 1 1 1 8481500 14475000 206360 16816000 12619000 4943800 6623200 8284800 5760000 6927000 11643000 7898600 13516000 953440 16812000 11961000 5843800 7004900 8214200 6106300 6821200 11050000 3 3 3 3 3 3 3 3 3 3 3 1256200000 564380000 691830000 1034 1878 976 5491;5492;5493 6685;6686;6687;6688 6688 4 AKELDPTNMTYITNQAAVYFEK Oxidation (M) 2562.2312 0.23120509 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 1 1 By MS/MS 7.5 0.5 1 1 2 68.582 68.662 3 2.2821E-05 23529 20211116_3446_TMUAki_TMT10x_S_F7 77.045 61.453 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1035 897 977 5494;5495 6689;6690 6689 1100 2 AKENDENCGPTTTVFVGNISEK Unmodified 2409.1118 0.11181823 1118 P49756;P49756-2;P49756-3;P49756-4 RBM25 RNA-binding protein 25 yes no 0 0 0 1 By MS/MS By matching 5 0 2 1 1 50.498 50.686 4 6.7225E-14 14902 20211116_3433_TMUAki_TMT10x_P_F5 123.12 106.89 3739800 5631300 53320 6742200 7359100 9077100 5191400 5249900 5155100 4735600 5150200 3482400 5258800 398480 6834600 7004200 9017100 5378100 5515500 5245900 4646200 4968300 2 2 1 2 2 2 2 2 2 2 2 3739800 5631300 53320 6742200 7359100 9077100 5191400 5249900 5155100 4735600 5150200 3482400 5258800 398480 6834600 7004200 9017100 5378100 5515500 5245900 4646200 4968300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 803380000 345130000 458260000 1036 1118 978 5496;5497 6691;6692 6692 2 AKESWEMNSEEKLEQSTIVK Oxidation (M) 2381.1421 0.14205573 1497 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 0 0 1 2 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 53.854 54.016 4 0.024965 16082 20211116_3433_TMUAki_TMT10x_P_F5 41.711 26.29 25216000 45069000 349800 42329000 36910000 36010000 27556000 36451000 37729000 38924000 41800000 23481000 42044000 2580400 43282000 35177000 37085000 28755000 37113000 38082000 37913000 40197000 2 2 2 2 2 2 2 2 2 2 2 3349100 6207600 129690 5264000 8007200 10674000 6532200 4215000 4634000 4874000 5372900 3119300 5788800 463770 5517700 7648500 10395000 6644300 4631200 4823600 4733100 5160200 1 1 1 1 1 1 1 1 1 1 1 21867000 38861000 220110 37065000 28903000 25337000 21024000 32236000 33095000 34050000 36428000 20362000 36255000 2116600 37764000 27529000 26690000 22111000 32481000 33258000 33180000 35037000 1 1 1 1 1 1 1 1 1 1 1 1230400000 483550000 746830000 1037 1497 979 5498;5499;5500 6693 6693 2027 1 AKFEELNMDLFR Oxidation (M) 1527.7392 0.73916421 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 1 1 By MS/MS By MS/MS 5.5 0.957 2 4 4 2 6 6 60.864 61.022 2;3 0.00058149 18291 20211116_3445_TMUAki_TMT10x_S_F6 81.494 75.061 82983000 135340000 749030 117000000 107220000 182740000 97530000 171780000 171180000 148210000 132130000 77270000 126220000 7854200 121630000 102600000 181860000 101720000 174500000 169540000 145720000 128670000 11 11 7 11 11 11 11 11 11 11 11 55940000 89928000 629190 76938000 75506000 149260000 69022000 113650000 114390000 97495000 87870000 52090000 83864000 5456600 80488000 72271000 146800000 71755000 116860000 113440000 95884000 85586000 7 7 4 7 7 7 7 7 7 7 7 27042000 45409000 119840 40057000 31710000 33475000 28508000 58129000 56790000 50715000 44261000 25180000 42352000 2397700 41145000 30330000 35062000 29960000 57635000 56092000 49836000 43084000 4 4 3 4 4 4 4 4 4 4 4 12149000000 7047900000 5100700000 1038 614 980 5501;5502;5503;5504;5505;5506;5507;5508;5509;5510;5511;5512 6694;6695;6696;6697;6698;6699;6700;6701;6702;6703;6704;6705 6704 611 12 AKFEELNMDLFR Unmodified 1511.7442 0.74424959 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 1 By MS/MS By MS/MS 6.22 1.31 1 2 2 2 2 5 4 67.953 68.064 3 8.314E-12 21248 20211116_3445_TMUAki_TMT10x_S_F6 163.33 127.98 131460000 210710000 918930 218040000 157180000 139560000 150860000 78632000 64070000 92157000 142300000 122410000 196640000 11866000 220750000 150590000 145650000 150660000 83427000 71754000 89448000 134850000 12 12 7 12 12 12 12 12 12 12 12 40390000 60505000 534810 64784000 45532000 62400000 50337000 25677000 22164000 30032000 42081000 37611000 56474000 3911400 65752000 43811000 62891000 49936000 28090000 24488000 29151000 39977000 4 4 3 4 4 4 4 4 4 4 4 91068000 150200000 384120 153260000 111650000 77162000 100520000 52955000 41906000 62126000 100220000 84795000 140170000 7954200 154990000 106780000 82757000 100730000 55337000 47266000 60297000 94870000 8 8 4 8 8 8 8 8 8 8 8 10129000000 5362100000 4767300000 1039 614 980 5513;5514;5515;5516;5517;5518;5519;5520;5521 6706;6707;6708;6709;6710;6711;6712;6713;6714;6715;6716;6717;6718 6712 13 AKFEEYGPVIECDIVK Unmodified 1895.9339 0.93390085 2707 Q9BWF3;Q9BWF3-3;Q9BWF3-4;Q9BWF3-2;Q9BQ04 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 0 0 0 1 By MS/MS By MS/MS 4.75 0.829 2 1 1 1 3 64.538 64.538 3 1.6836E-10 19461 20211116_3444_TMUAki_TMT10x_S_F5 126.88 110.2 23187000 38183000 316140 38324000 26817000 26340000 23424000 21126000 18995000 21269000 26553000 21592000 35629000 2267900 38908000 25647000 27456000 23800000 21747000 19786000 20766000 25380000 5 5 5 5 5 5 5 5 5 5 5 5197100 7609500 16789 8398300 5844400 9369000 5417400 4638700 3883300 4673100 5831300 4839200 7103400 455590 8526400 5594100 9378300 5469900 4956000 4086900 4562600 5565000 1 1 1 1 1 1 1 1 1 1 1 17990000 30573000 299350 29926000 20972000 16971000 18006000 16488000 15111000 16596000 20721000 16753000 28526000 1812300 30381000 20053000 18077000 18330000 16791000 15699000 16204000 19815000 4 4 4 4 4 4 4 4 4 4 4 1363100000 473590000 889500000 1040 2707 981 5522;5523;5524;5525 6719;6720;6721;6722;6723;6724 6722 6 AKFENLCK Unmodified 1008.5063 0.50625115 553;1914 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 no no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 39.64 39.944 3 0.0075851 9995 20211116_3436_TMUAki_TMT10x_P_F8 78.098 58.827 13283000 21380000 89156 20350000 16436000 18476000 16610000 15067000 15660000 14454000 17420000 12368000 19946000 1125900 20805000 15763000 18861000 16810000 15473000 16035000 14142000 16750000 5 5 2 5 5 5 5 5 5 5 5 5825700 8835400 0 8399700 11283000 10390000 7050800 5434200 6008200 5266600 6858000 5423700 8242700 481520 8629600 10707000 10350000 7340900 5770200 6188100 5150600 6589300 2 2 0 2 2 2 2 2 2 2 2 7457400 12544000 89156 11950000 5153100 8086600 9559500 9632900 9651700 9187500 10562000 6944000 11703000 644420 12175000 5055600 8511100 9469100 9702700 9847200 8991400 10160000 3 3 2 3 3 3 3 3 3 3 3 458440000 373480000 84953000 1041 553;1914 982 5526;5527;5528 6725;6726;6727;6728;6729 6726 5 AKGILFVGSGVSGGEEGAR Unmodified 1789.9323 0.93226137 1170 P52209;P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 50.655 50.649 3 2.404E-10 14399 20211116_3436_TMUAki_TMT10x_P_F8 108.25 89.414 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1042 1170 983 5529;5530 6730;6731 6730 2 AKHDELTYF Unmodified 1122.5346 0.53457439 483 P04080 CSTB Cystatin-B yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 1.12 2 2 2 2 5 3 43.366 43.36 3 0.00076539 10824 20211116_3444_TMUAki_TMT10x_S_F5 98.033 90.108 17922000 26626000 665700 36713000 33215000 28562000 19155000 23326000 26168000 22707000 25697000 16691000 24883000 2281000 36619000 31532000 29482000 20382000 23962000 26298000 22203000 24804000 10 10 9 10 10 10 10 10 10 10 10 7886000 11448000 293130 15987000 24039000 20462000 10903000 10091000 11784000 10253000 10865000 7344800 10699000 1153200 16056000 22737000 20336000 11774000 10788000 11917000 10007000 10510000 5 5 5 5 5 5 5 5 5 5 5 10036000 15178000 372560 20725000 9176500 8100100 8251700 13235000 14384000 12454000 14832000 9346600 14184000 1127800 20563000 8795600 9146000 8608300 13174000 14381000 12196000 14294000 5 5 4 5 5 5 5 5 5 5 5 2056100000 1474100000 582020000 1043 483 984 5531;5532;5533;5534;5535;5536;5537;5538 6732;6733;6734;6735;6736;6737;6738;6739;6740;6741;6742 6742 11 AKIELLGSYDPQK Unmodified 1460.7875 0.78749461 794 P24666;P24666-2;P24666-3 ACP1 Low molecular weight phosphotyrosine protein phosphatase yes no 0 0 0 1 By MS/MS By MS/MS 7 0.866 3 2 3 4 4 55.509 55.768 3;4 3.1434E-09 16438 20211116_3436_TMUAki_TMT10x_P_F8 130.27 96.09 112030000 181720000 429670 176800000 169980000 194070000 121640000 129770000 124740000 124000000 151410000 104320000 169540000 5959700 180970000 161780000 195200000 126010000 135010000 127720000 121350000 145230000 7 7 4 7 7 7 7 7 7 7 7 79633000 129660000 123250 120460000 134140000 162820000 89002000 91692000 83279000 85963000 108950000 74147000 120950000 3107200 124170000 127490000 161660000 92461000 96644000 85883000 84192000 104310000 4 4 2 4 4 4 4 4 4 4 4 32401000 52054000 306420 56343000 35843000 31248000 32642000 38075000 41465000 38041000 42452000 30169000 48588000 2852500 56801000 34296000 33534000 33551000 38366000 41832000 37154000 40922000 3 3 2 3 3 3 3 3 3 3 3 7000600000 3465500000 3535100000 1044 794 985 5539;5540;5541;5542;5543;5544;5545;5546 6743;6744;6745;6746;6747;6748;6749;6750;6751 6746 9 AKINEAVECLLSLK Unmodified 1586.8702 0.87017839 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 78.408 78.354 3 2.8729E-06 25816 20211116_3440_TMUAki_TMT10x_S_F2 109.48 89.9 27424000 45546000 275380 41488000 34815000 30644000 34401000 23124000 17591000 24000000 31579000 25536000 42484000 2498100 42449000 33380000 31718000 34395000 23917000 19128000 23403000 30030000 3 3 2 3 3 3 3 3 3 3 3 5351200 9060900 79732 7595900 5665400 10178000 7289400 5959200 4435900 5725000 6716000 4983100 8449300 522360 7891200 5477900 10115000 7220700 6264800 4718500 5601000 6408100 1 1 1 1 1 1 1 1 1 1 1 22073000 36485000 195640 33892000 29150000 20466000 27111000 17165000 13155000 18275000 24863000 20553000 34035000 1975800 34557000 27902000 21603000 27175000 17652000 14409000 17802000 23622000 2 2 1 2 2 2 2 2 2 2 2 3118600000 1230400000 1888200000 1045 542 986 5547;5548;5549;5550 6752;6753;6754 6753 3 AKKPAAAAGAK Unmodified 982.59236 0.59236404 606 P10412 HIST1H1E Histone H1.4 yes yes 0 0 0 2 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 28.92 28.667 3 2.7855E-07 6997 20211116_3429_TMUAki_TMT10x_P_F2 112.15 83.404 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1046 606 987 5551;5552 6755;6756 6755 2 AKKPAAATVTK Unmodified 1084.6604 0.66044361 695 P16403 HIST1H1C Histone H1.2 yes yes 0 0 0 2 By MS/MS By MS/MS 2.5 1.12 1 1 1 1 2 2 30.792 30.693 4 4.8048E-11 7794 20211116_3429_TMUAki_TMT10x_P_F2 166.7 135.06 4061600 6745500 56634 5198100 4387900 6575100 3916200 2246900 3493800 3226400 4589000 3782200 6288500 393570 5432800 4198800 6516100 3984000 2532200 3611700 3110700 4392900 4 4 3 4 4 4 4 4 4 4 4 2578800 4211900 54060 3268200 2889300 5176600 1923300 1434000 2239900 2009700 2894200 2401500 3926600 268530 3429300 2749400 5071800 2011200 1664100 2288000 1939000 2771700 2 2 2 2 2 2 2 2 2 2 2 1482800 2533600 2573.7 1929900 1498600 1398500 1993000 812870 1254000 1216800 1694800 1380600 2361900 125040 2003500 1449400 1444300 1972800 868110 1323700 1171700 1621200 2 2 1 2 2 2 2 2 2 2 2 294700000 141400000 153310000 1047 695 988 5553;5554;5555;5556 6757;6758;6759;6760 6757 4 AKKPAGAAK Unmodified 840.51814 0.51813647 606 P10412 HIST1H1E Histone H1.4 yes yes 0 0 0 2 By MS/MS 2 0 1 1 27.639 27.402 3 0.0069382 6527 20211116_3429_TMUAki_TMT10x_P_F2 67.414 4.856 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1048 606 989 5557 6761 6761 1 AKKPAGATPK Unmodified 967.58147 0.581465 693 P16401 HIST1H1B Histone H1.5 yes yes 0 0 0 2 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 28.631 28.377 3 0.00012974 8427 20211116_3441_TMUAki_TMT10x_S_F3 88.441 61.843 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1049 693 990 5558;5559 6762;6763 6763 2 AKLAEQAER Unmodified 1014.5458 0.54580778 1395;825;895;896 P27348;P31946;P31946-2;P63104;P31947;P31947-2 YWHAQ;YWHAB;YWHAZ;SFN 14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein sigma no no 0 0 0 1 By MS/MS 4 0 1 1 29.275 29.314 3 0.029171 6080 20211116_3431_TMUAki_TMT10x_P_F4 60.691 33.719 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1050 825;895;1395;896 991 5560 6764 6764 1 AKLDVQFAGTAK Unmodified 1247.6874 0.68738664 1703 Q14315;Q14315-2 FLNC Filamin-C yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 46.819 47.161 3 3.4549E-12 12477 20211116_3447_TMUAki_TMT10x_S_F8 136.6 99.834 7803200 13214000 39654 13621000 14655000 21076000 11719000 14826000 13134000 14173000 12190000 7265800 12332000 775220 13979000 13980000 20871000 12084000 15370000 13266000 13869000 11789000 3 3 2 3 3 3 3 3 3 3 3 7803200 13214000 39654 13621000 14655000 21076000 11719000 14826000 13134000 14173000 12190000 7265800 12332000 775220 13979000 13980000 20871000 12084000 15370000 13266000 13869000 11789000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 737670000 737670000 0 1051 1703 992 5561;5562;5563 6765;6766;6767;6768 6768 4 AKLEATLQEEAAIQQEHR Unmodified 2064.06 0.05998108 412 O95202 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes yes 0 0 0 1 By MS/MS 5 0 1 1 48.311 48.484 4 7.0374E-06 12948 20211116_3444_TMUAki_TMT10x_S_F5 92.492 78.238 2065400 3409500 36922 3804200 1764000 1698100 1797100 2443500 2543200 2229300 2844100 1923400 3182900 201430 3821600 1694500 1876600 1844200 2440300 2565300 2186100 2734300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2065400 3409500 36922 3804200 1764000 1698100 1797100 2443500 2543200 2229300 2844100 1923400 3182900 201430 3821600 1694500 1876600 1844200 2440300 2565300 2186100 2734300 1 1 1 1 1 1 1 1 1 1 1 110340000 0 110340000 1052 412 993 5564 6769 6769 1 AKLEEAILGSIGAR Unmodified 1426.8144 0.81437807 2525 Q96N67;Q96N67-3;Q96N67-2;Q96N67-4;Q96N67-5;Q96N67-6 DOCK7 Dedicator of cytokinesis protein 7 yes no 0 0 0 1 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 68.281 68.269 3 7.6506E-05 21604 20211116_3436_TMUAki_TMT10x_P_F8 94.882 69.496 17113000 27635000 15654 29516000 17589000 29689000 14458000 19515000 12750000 16237000 20513000 15933000 25793000 1283200 29981000 16776000 30006000 14776000 20256000 13321000 15993000 19548000 3 3 1 3 2 3 3 3 3 3 3 11304000 17720000 0 19887000 10948000 24109000 8682600 13395000 7168900 10613000 12793000 10524000 16543000 775410 20198000 10429000 24060000 8878800 14077000 7558900 10480000 12167000 2 2 0 2 1 2 2 2 2 2 2 5808600 9914800 15654 9628700 6640400 5580000 5775300 6119100 5581400 5624000 7720400 5408500 9250500 507810 9782600 6346300 5946400 5897400 6179500 5762500 5513100 7381400 1 1 1 1 1 1 1 1 1 1 1 1006900000 667230000 339660000 1053 2525 994 5565;5566;5567 6770;6771;6772;6773 6771 4 AKLEEHFK Unmodified 1000.5342 0.53418046 84 O00410;O00410-2;O00410-3 IPO5 Importin-5 yes no 0 0 0 1 By MS/MS 5 0 1 1 33.614 33.792 4 0.035328 7047 20211116_3444_TMUAki_TMT10x_S_F5 57.598 36.135 381210 572450 4120 670370 311670 296660 389340 283840 288480 306360 429680 354970 534520 34470 671380 301040 324980 387750 289910 302900 298280 410130 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 381210 572450 4120 670370 311670 296660 389340 283840 288480 306360 429680 354970 534520 34470 671380 301040 324980 387750 289910 302900 298280 410130 1 1 1 1 1 1 1 1 1 1 1 11039000 0 11039000 1054 84 995 5568 6774 6774 1 AKLQIELGK Unmodified 998.61243 0.61243078 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 1 By MS/MS By MS/MS 6.4 2.73 1 1 3 2 3 48.253 48.332 3 0.00011498 13411 20211116_3436_TMUAki_TMT10x_P_F8 96.113 62.705 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1055 748 996 5569;5570;5571;5572;5573 6775;6776;6777;6778;6779 6776 5 AKLVILANNCPALR Unmodified 1551.8919 0.89191688 1378 P62888 RPL30 60S ribosomal protein L30 yes yes 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 54.256 54.35 3 7.285E-10 15256 20211116_3434_TMUAki_TMT10x_P_F6 138.02 122.99 2883500 4727400 86886 4389300 5833600 7477800 4362500 4605700 3922700 3815500 3864600 2685500 4409900 361360 4547900 5561800 7362800 4488300 4804000 4007800 3759000 3729800 1 1 1 1 1 1 1 1 1 1 1 2883500 4727400 86886 4389300 5833600 7477800 4362500 4605700 3922700 3815500 3864600 2685500 4409900 361360 4547900 5561800 7362800 4488300 4804000 4007800 3759000 3729800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 449670000 449670000 0 1056 1378 997 5574;5575 6780;6781 6780 2 AKPGDRVQVVGTYR Unmodified 1544.8423 0.84232415 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 2 By MS/MS By MS/MS 1 0 2 1 1 31.913 31.928 4 2.4982E-29 6743 20211116_3428_TMUAki_TMT10x_P_F1 204.67 182.63 647350 972610 8726.6 913380 1163200 794290 554550 738260 746140 606180 772490 602810 907330 69027 934200 1100600 815250 600260 749490 751620 597470 744380 2 2 2 2 2 2 2 2 2 2 2 329260 487260 4138.5 460500 489790 534660 276210 372720 362920 293720 377700 306610 454570 33404 472780 464520 536460 294020 384760 365940 290120 363890 1 1 1 1 1 1 1 1 1 1 1 318080 485350 4588.1 452880 673400 259620 278330 365540 383230 312460 394790 296200 452760 35624 461420 636030 278790 306230 364720 385690 307350 380480 1 1 1 1 1 1 1 1 1 1 1 72023000 33048000 38975000 1057 799 998 5576;5577 6782;6783 6782 2 AKPGFLPK Unmodified 856.51707 0.51707383 3311 Q9Y520;Q9Y520-3;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520-7;Q9Y520-2 PRRC2C Protein PRRC2C yes no 0 0 0 1 By MS/MS By MS/MS 3 0 3 1 2 41.283 41.09 3 0.0018887 13627 20211116_3441_TMUAki_TMT10x_S_F3 94.302 49.664 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1058 3311 999 5578;5579;5580 6784;6785;6786 6785 3 AKPYEGSILEADCDILIPAASEK Unmodified 2489.236 0.23595611 463 P00367;P00367-3;P00367-2 GLUD1 Glutamate dehydrogenase 1, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 5 1.07 1 4 4 4 1 8 6 71.232 71.189 3;4 1.0961E-27 23095 20211116_3431_TMUAki_TMT10x_P_F4 164.65 154.25 90119000 154960000 800030 141170000 101380000 128490000 107740000 90301000 85058000 93107000 109200000 83911000 144550000 7813700 144810000 97377000 130820000 108250000 93824000 88381000 90818000 104600000 27 27 13 27 27 27 27 27 27 27 27 43551000 73366000 297680 66482000 41827000 77727000 52103000 44449000 41695000 45269000 51599000 40550000 68433000 3643800 68477000 40368000 77742000 51991000 46897000 43225000 44178000 49469000 13 13 6 13 13 13 13 13 13 13 13 46569000 81598000 502350 74692000 59550000 50761000 55635000 45853000 43363000 47838000 57606000 43361000 76114000 4169900 76328000 57009000 53078000 56257000 46927000 45157000 46640000 55130000 14 14 7 14 14 14 14 14 14 14 14 16344000000 8571100000 7773100000 1059 463 1000 5581;5582;5583;5584;5585;5586;5587;5588;5589;5590;5591;5592;5593;5594 6787;6788;6789;6790;6791;6792;6793;6794;6795;6796;6797;6798;6799;6800;6801;6802;6803;6804;6805;6806;6807;6808;6809;6810;6811;6812;6813;6814 6790 28 AKQEPEVNGGSGDAVPSGNEVSENMEEEAENQAESR Oxidation (M) 3789.6144 0.61437681 1091 P49321;P49321-3;P49321-4;P49321-2 NASP Nuclear autoantigenic sperm protein yes no 0 0 1 1 By MS/MS By MS/MS 1.46 0.746 9 2 2 6 7 39.533 39.409 4;5 1.02E-26 12109 20211116_3439_TMUAki_TMT10x_S_F1 141.01 135.28 4650800 7471300 17680 9751000 7752000 12355000 5977500 10415000 11847000 7406200 7550400 4330100 6980000 286820 9825500 7386300 12382000 6337800 10597000 11643000 7357200 7416600 18 18 7 18 18 18 18 18 18 18 18 3146600 5135000 12548 6699900 7158900 11686000 5488000 7271600 8400600 5324900 5269900 2929500 4797400 222100 6799000 6820300 11498000 5744300 7557800 8307600 5280800 5180600 11 11 4 11 11 11 11 11 11 11 11 1504300 2336200 5131.7 3051100 593100 668360 489510 3143100 3446200 2081300 2280400 1400600 2182600 64715 3026500 565970 883460 593480 3039000 3335200 2076400 2235900 7 7 3 7 7 7 7 7 7 7 7 4088800000 3438300000 650550000 1060 1091 1001 5595;5596;5597;5598;5599;5600;5601;5602;5603;5604;5605;5606;5607 6815;6816;6817;6818;6819;6820;6821;6822;6823;6824;6825;6826;6827;6828;6829;6830;6831;6832 6828 1415 18 AKQEPEVNGGSGDAVPSGNEVSENMEEEAENQAESR Unmodified 3773.6195 0.61946219 1091 P49321;P49321-3;P49321-4;P49321-2 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 51.244 51.104 4 5.571E-39 14781 20211116_3440_TMUAki_TMT10x_S_F2 162.58 158.35 5893000 11073000 9558.8 11430000 5303200 6178100 5489600 2975500 2269600 2967200 5478400 5486100 10333000 373550 11557000 5082700 6545800 5458900 3186700 2563700 2898300 5185500 5 5 1 5 5 5 5 5 5 5 5 2746000 5315800 0 4999400 3206800 4607600 3765400 1365100 1104400 1242200 2097400 2556200 4959000 151490 5116700 3083500 4645200 3707800 1547900 1275200 1218300 1992500 2 2 0 2 2 2 2 2 2 2 2 3147000 5757000 9558.8 6430800 2096400 1570500 1724200 1610400 1165200 1725000 3381000 2930000 5374400 222050 6440200 1999200 1900600 1751100 1638800 1288500 1680000 3192900 3 3 1 3 3 3 3 3 3 3 3 2447800000 1518500000 929340000 1061 1091 1001 5608;5609;5610 6833;6834;6835;6836;6837 6836 5 AKQGYVIYR Unmodified 1096.6029 0.60292873 1308 P61313;P61313-2 RPL15 60S ribosomal protein L15 yes no 0 0 0 1 By MS/MS 2 0 1 1 34.677 34.454 3 0.017885 9308 20211116_3429_TMUAki_TMT10x_P_F2 59.153 32.016 614820 971350 32767 890070 1818900 1629100 928200 991040 971900 732430 1227800 572710 906070 98375 924810 1723600 1599700 989440 1032100 995910 725990 1176500 1 1 1 1 1 1 1 1 1 1 1 614820 971350 32767 890070 1818900 1629100 928200 991040 971900 732430 1227800 572710 906070 98375 924810 1723600 1599700 989440 1032100 995910 725990 1176500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37754000 37754000 0 1062 1308 1002 5611 6838 6838 1 AKQPPSTFVPQINR Unmodified 1581.8627 0.86272524 2066 Q7LBC6 KDM3B Lysine-specific demethylase 3B yes yes 0 0 0 1 By MS/MS By MS/MS 3 0 2 1 1 42.642 42.689 3 1.8025E-06 14368 20211116_3441_TMUAki_TMT10x_S_F3 92.265 80.995 1206500 1785400 1941.3 2316100 3326400 2787100 1671100 1456800 1627600 1184700 1670100 1123400 1668000 130130 2332400 3147900 2780300 1780200 1540100 1659200 1168300 1609800 2 2 1 2 2 2 2 2 2 2 2 1206500 1785400 1941.3 2316100 3326400 2787100 1671100 1456800 1627600 1184700 1670100 1123400 1668000 130130 2332400 3147900 2780300 1780200 1540100 1659200 1168300 1609800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37901000 37901000 0 1063 2066 1003 5612;5613 6839;6840;6841 6841 3 AKQTLENERGELANEVK Unmodified 1927.9963 0.99631819 934 P35579 MYH9 Myosin-9 yes yes 0 0 0 2 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 42.103 42.196 4 2.6748E-21 10413 20211116_3444_TMUAki_TMT10x_S_F5 166.3 152.71 4264900 6499000 104260 9020300 7235100 6857900 4257700 8829500 10093000 6822500 8115900 3971800 6073700 482230 8991800 6868200 7164100 4655100 8817700 9942900 6745900 7890400 3 3 2 3 3 3 3 3 3 3 3 1595700 2623800 85539 3170600 5770500 5029500 2916100 3195900 3276600 2508800 2868800 1486400 2450400 270480 3223700 5466500 4967800 3118300 3321300 3303100 2478600 2780000 1 1 1 1 1 1 1 1 1 1 1 2669300 3875200 18726 5849700 1464600 1828400 1341700 5633600 6816900 4313700 5247200 2485400 3623300 211740 5768100 1401700 2196200 1536900 5496300 6639800 4267400 5110400 2 2 1 2 2 2 2 2 2 2 2 1074100000 963480000 110580000 1064 934 1004 5614;5615;5616 6842;6843;6844 6843 3 AKRPEVPFPEITR Unmodified 1538.8569 0.85691158 2879 Q9NP66 HMG20A High mobility group protein 20A yes yes 0 0 0 2 By MS/MS By MS/MS 3.33 3.3 2 1 1 2 41.752 41.738 4 2.6903E-14 10658 20211116_3428_TMUAki_TMT10x_P_F1 161.04 136.11 5375500 8237200 35989 9465200 8191400 7893900 5739300 7528400 7610700 6760100 7801200 5005200 7690800 493530 9545900 7793200 8130500 6007700 7649800 7667400 6633900 7519700 6 6 4 6 6 6 6 6 6 6 6 2230200 3170600 4538.7 3696800 5100300 5047400 2942800 3121100 3084800 2697400 3030400 2076400 2960500 212360 3754400 4835400 5015400 3102200 3257900 3130100 2651900 2925000 2 2 1 2 2 2 2 2 2 2 2 3145300 5066600 31450 5768500 3091100 2846500 2796400 4407300 4525900 4062600 4770800 2928800 4730300 281170 5791500 2957800 3115200 2905500 4391900 4537300 3982000 4594600 4 4 3 4 4 4 4 4 4 4 4 419920000 148000000 271910000 1065 2879 1005 5617;5618;5619 6845;6846;6847;6848;6849;6850 6846 6 AKTPVTLK Unmodified 856.5382 0.53820321 1007 P42167;P42167-2;P42167-3 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes no 0 0 0 1 By MS/MS 2 0 1 1 36.195 35.965 3 0.097104 9882 20211116_3429_TMUAki_TMT10x_P_F2 44.425 10.628 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1066 1007 1006 5620 6851 6851 1 AKVDEFPLCGHMVSDEYEQLSSEALEAAR Oxidation (M) 3296.4966 0.49655727 827 P27635 RPL10 60S ribosomal protein L10 yes yes 0 0 1 1 By MS/MS By MS/MS 3.36 1.72 2 2 2 2 1 2 5 6 70.917 70.784 4 4.0633E-34 22858 20211116_3431_TMUAki_TMT10x_P_F4 176.28 168.2 72938000 134630000 865640 118350000 79741000 118290000 83526000 89075000 97366000 95746000 92317000 67917000 125570000 5388500 121880000 76595000 119850000 84954000 92239000 98268000 93236000 89211000 17 17 7 17 17 17 17 17 17 17 17 40612000 72744000 182570 63576000 35876000 78549000 42468000 47743000 52276000 51347000 47044000 37815000 67844000 2353500 65729000 34570000 78405000 43036000 50204000 52567000 50000000 45543000 8 8 3 8 8 8 8 8 8 8 8 32325000 61888000 683060 54771000 43865000 39737000 41058000 41332000 45089000 44399000 45273000 30102000 57722000 3035100 56153000 42025000 41445000 41919000 42035000 45701000 43236000 43668000 9 9 4 9 9 9 9 9 9 9 9 40565000000 21195000000 19370000000 1067 827 1007 5621;5622;5623;5624;5625;5626;5627;5628;5629;5630;5631 6852;6853;6854;6855;6856;6857;6858;6859;6860;6861;6862;6863;6864;6865;6866;6867;6868 6857 995 17 AKVDEFPLCGHMVSDEYEQLSSEALEAAR Unmodified 3280.5016 0.50164264 827 P27635 RPL10 60S ribosomal protein L10 yes yes 0 0 0 1 By MS/MS By MS/MS 3.62 1.32 2 2 2 1 1 5 3 75.682 75.622 4 1.3188E-64 25262 20211116_3442_TMUAki_TMT10x_S_F4 232.02 226.03 66348000 110680000 906070 106410000 60478000 82922000 75734000 42572000 37885000 46971000 69633000 61781000 103260000 5587700 108510000 58411000 85018000 74851000 45452000 41324000 45693000 66190000 15 15 11 15 15 15 15 15 15 15 15 47645000 76553000 772440 72084000 38628000 66234000 52573000 28238000 25340000 32951000 48858000 44367000 71416000 4409600 73766000 37427000 66982000 51755000 30769000 27805000 31988000 46404000 10 10 8 10 10 10 10 10 10 10 10 18702000 34126000 133630 34327000 21850000 16689000 23161000 14333000 12544000 14020000 20775000 17414000 31844000 1178000 34742000 20985000 18036000 23096000 14683000 13518000 13705000 19786000 5 5 3 5 5 5 5 5 5 5 5 21606000000 12476000000 9129900000 1068 827 1007 5632;5633;5634;5635;5636;5637;5638;5639 6869;6870;6871;6872;6873;6874;6875;6876;6877;6878;6879;6880;6881;6882 6880 14 AKVEFNIR Unmodified 975.55016 0.55016488 2232 Q8NC51;Q8NC51-3;Q8NC51-2;Q8NC51-4 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 0 0 0 1 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 38.986 39.247 3 0.0029818 9713 20211116_3436_TMUAki_TMT10x_P_F8 94.692 60.614 4284600 7231300 63046 6287200 11608000 12804000 6245500 12434000 8878700 7902100 8112500 3989800 6744000 514230 6578100 10999000 12634000 6697000 12525000 8890200 7904300 7849500 5 5 4 5 5 5 5 5 5 5 5 3483000 5793500 53512 5099600 10101000 11851000 5458300 9822500 7551600 6299400 6498500 3243400 5403400 429010 5352400 9571800 11611000 5844200 9983800 7553500 6297500 6301500 4 4 3 4 4 4 4 4 4 4 4 801620 1437800 9534.1 1187500 1506500 953350 787200 2611900 1327100 1602600 1614000 746460 1340700 85218 1225600 1427000 1022900 852820 2541600 1336600 1606800 1548100 1 1 1 1 1 1 1 1 1 1 1 411880000 313710000 98167000 1069 2232 1008 5640;5641;5642;5643 6883;6884;6885;6886 6885 4 AKVNDFLAEIFKK Unmodified 1521.8555 0.8555146 1672 Q14008;Q14008-2;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 2 By MS/MS 4.5 0.5 1 1 2 76.38 76.403 4 6.8729E-06 25476 20211116_3433_TMUAki_TMT10x_P_F5 106.19 90.048 4687000 7470100 0 6721800 5059700 8900100 5565400 4519600 4948600 4943500 4717100 4364000 6967600 390610 6942800 4864000 8834000 5599700 4829000 5053100 4810600 4557600 1 1 0 1 1 1 1 1 1 1 1 4687000 7470100 0 6721800 5059700 8900100 5565400 4519600 4948600 4943500 4717100 4364000 6967600 390610 6942800 4864000 8834000 5599700 4829000 5053100 4810600 4557600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1046100000 1046100000 0 1070 1672 1010 5644;5645 6887 6887 1 AKWDAWNELK Unmodified 1259.6299 0.62987176 530 P07108;P07108-5;P07108-3;P07108-2;P07108-4 DBI Acyl-CoA-binding protein yes no 0 0 0 1 By MS/MS 8 0 1 1 58.81 58.987 3 0.087625 17750 20211116_3436_TMUAki_TMT10x_P_F8 44.89 23.882 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1071 530 1011 5646 6888 6888 1 AKYPDRVPVIVEK Unmodified 1512.8664 0.86641364 1274 P60520 GABARAPL2 Gamma-aminobutyric acid receptor-associated protein-like 2 yes yes 0 0 0 2 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 43.765 43.926 4 2.1628E-11 11643 20211116_3436_TMUAki_TMT10x_P_F8 145.52 117.22 16526000 26075000 281400 30571000 25603000 21541000 16948000 13219000 14310000 11849000 20014000 15390000 24347000 1758000 30734000 24349000 22314000 17562000 13819000 14876000 11629000 19130000 8 8 7 8 8 8 8 8 8 8 8 7761200 11946000 98431 14012000 18691000 14588000 9116100 5981800 6574800 5241500 9095000 7227200 11155000 888260 14157000 17687000 14633000 9668800 6494100 6889300 5149600 8695600 3 3 3 3 3 3 3 3 3 3 3 8765200 14128000 182970 16559000 6912300 6952700 7831900 7237000 7735100 6607900 10919000 8162600 13192000 869750 16577000 6662000 7681900 7893100 7324900 7986300 6479500 10435000 5 5 4 5 5 5 5 5 5 5 5 1845300000 1361500000 483850000 1072 1274 1012 5647;5648;5649;5650;5651;5652 6889;6890;6891;6892;6893;6894;6895;6896 6891 8 AKYPSLGQKPGGSDFLMK Oxidation (M) 1938.9873 0.98733341 243 O43768;O43768-3;O43768-6;O43768-5;O43768-2;O43768-9;O43768-7;O43768-4;O43768-8 ENSA Alpha-endosulfine yes no 0 0 1 2 By MS/MS By MS/MS 2.8 0.748 2 2 1 2 3 51.106 50.953 4 7.6269E-06 17516 20211116_3441_TMUAki_TMT10x_S_F3 88.551 77.735 37335000 64737000 65419 77255000 70687000 81380000 43616000 69249000 78818000 58851000 57397000 34761000 60453000 2781400 77991000 67088000 82378000 46747000 70709000 77884000 57905000 56032000 6 6 1 6 6 6 6 6 6 6 6 23111000 40889000 65419 49443000 61149000 71725000 36809000 40983000 47614000 35343000 35336000 21518000 38186000 2315800 50169000 58012000 71004000 38944000 43052000 47531000 34751000 34468000 3 3 1 3 3 3 3 3 3 3 3 14224000 23848000 0 27813000 9538000 9655000 6807200 28266000 31204000 23508000 22061000 13244000 22267000 465610 27822000 9075500 11374000 7802900 27657000 30353000 23155000 21564000 3 3 0 3 3 3 3 3 3 3 3 5195200000 3070400000 2124800000 1073 243 1013 5653;5654;5655;5656;5657 6897;6898;6899;6900;6901 6901 192 5 AKYPSLGQKPGGSDFLMK Unmodified 1922.9924 0.99241879 243 O43768;O43768-3;O43768-6;O43768-5;O43768-2;O43768-9;O43768-7;O43768-4;O43768-8 ENSA Alpha-endosulfine yes no 0 0 0 2 By MS/MS 3 0 1 1 54.649 54.269 4 8.8682E-12 18850 20211116_3441_TMUAki_TMT10x_S_F3 128.14 117.94 23642000 37449000 123060 52434000 17580000 12133000 13408000 13842000 11875000 13097000 25240000 22013000 35000000 1904300 51830000 16753000 14885000 13771000 13965000 12622000 12822000 23934000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23642000 37449000 123060 52434000 17580000 12133000 13408000 13842000 11875000 13097000 25240000 22013000 35000000 1904300 51830000 16753000 14885000 13771000 13965000 12622000 12822000 23934000 3 3 1 3 3 3 3 3 3 3 3 470070000 0 470070000 1074 243 1013 5658 6902;6903;6904 6903 3 AKYQYGGLNSGRPVTPPR Unmodified 1960.0279 0.027893091 1334 P62140 PPP1CB Serine/threonine-protein phosphatase PP1-beta catalytic subunit yes yes 0 0 0 2 By MS/MS By MS/MS 5 0 2 1 1 34.243 34.308 4 5.2042E-17 8524 20211116_3433_TMUAki_TMT10x_P_F5 144.17 124.33 617490 1009400 6554.2 1267200 1887700 1367000 988250 819810 1042700 725750 1018500 574950 942860 69637 1276000 1787400 1374100 1051100 858330 1057500 712680 983290 2 2 1 2 2 2 2 2 2 2 2 436890 714080 0 905960 1740900 1242800 856750 568030 747850 523080 731470 406740 667030 49030 915710 1646700 1230100 911900 610240 765000 512720 706130 1 1 0 1 1 1 1 1 1 1 1 180600 295340 6554.2 361250 146730 124220 131500 251790 294810 202670 287070 168210 275830 20607 360340 140710 144030 139240 248090 292500 199960 277170 1 1 1 1 1 1 1 1 1 1 1 106790000 90720000 16071000 1075 1334 1014 5659;5660 6905;6906 6905 2 ALAAAGYDVEK Unmodified 1106.5608 0.56078914 606;695;694 P10412;Q02539;P22492;P16403;P16402 HIST1H1E;HIST1H1A;HIST1H1T;HIST1H1C;HIST1H1D Histone H1.4;Histone H1.1;Histone H1t;Histone H1.2;Histone H1.3 no no 0 0 0 0 By MS/MS By MS/MS 4.21 1.82 4 4 4 2 2 2 1 9 10 47.764 47.817 2;3 1.3212E-18 15010 20211116_3430_TMUAki_TMT10x_P_F3 223.84 150.8 87038000 132660000 219970 153010000 143330000 123190000 105160000 86701000 114710000 89132000 112610000 81034000 123860000 7034100 154220000 136410000 126520000 108960000 90065000 116210000 86950000 108700000 20 20 6 20 20 20 20 20 20 20 20 45133000 68942000 196920 77847000 111870000 88654000 54280000 46114000 61238000 46405000 58613000 42022000 64363000 4533000 78950000 105810000 88692000 58285000 49041000 61902000 45310000 56623000 11 11 4 11 11 11 11 11 11 11 11 41905000 63720000 23053 75167000 31459000 34536000 50877000 40587000 53473000 42726000 53997000 39011000 59500000 2501200 75267000 30598000 37825000 50671000 41024000 54305000 41641000 52072000 9 9 2 9 9 9 9 9 9 9 9 32862000000 18855000000 14006000000 1076 606;695;694 1015 5661;5662;5663;5664;5665;5666;5667;5668;5669;5670;5671;5672;5673;5674;5675;5676;5677;5678;5679 6907;6908;6909;6910;6911;6912;6913;6914;6915;6916;6917;6918;6919;6920;6921;6922;6923;6924;6925;6926;6927;6928 6909 22 ALAAAGYDVEKNNSR Unmodified 1577.7798 0.77978347 606;695;694 P10412;Q02539;P22492;P16403;P16402 HIST1H1E;HIST1H1A;HIST1H1T;HIST1H1C;HIST1H1D Histone H1.4;Histone H1.1;Histone H1t;Histone H1.2;Histone H1.3 no no 0 0 0 1 By MS/MS By MS/MS 5.67 1.11 1 2 1 2 5 1 38.245 38.368 3 1.8621E-33 9012 20211116_3444_TMUAki_TMT10x_S_F5 222.75 189.07 5014800 8991900 8646.1 7202700 16944000 18490000 9289200 25764000 20069000 14411000 12414000 4668700 8383700 510220 7643100 16049000 18304000 10156000 25488000 19674000 14543000 12213000 7 7 4 7 7 7 7 7 7 7 7 3806200 6655900 8646.1 5948000 14284000 16452000 7873800 16601000 13304000 9662600 8926400 3543700 6208000 428450 6275000 13533000 16116000 8490000 16664000 13142000 9722900 8746500 6 6 4 6 6 6 6 6 6 6 6 1208600 2336000 0 1254700 2659300 2038200 1415400 9162300 6764800 4748700 3487800 1125100 2175700 81769 1368100 2516000 2188200 1666400 8823900 6531700 4819700 3466000 1 1 0 1 1 1 1 1 1 1 1 1123100000 890500000 232550000 1077 606;695;694 1016 5680;5681;5682;5683;5684;5685 6929;6930;6931;6932;6933;6934;6935;6936 6936 8 ALAAEEIR Unmodified 871.47633 0.47633123 2549 Q96S55;Q96S55-2 WRNIP1 ATPase WRNIP1 yes no 0 0 0 0 By MS/MS 2 0 1 1 34.544 34.638 2 0.024097 8024 20211116_3440_TMUAki_TMT10x_S_F2 67.169 27.212 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1078 2549 1017 5686 6937 6937 1 ALAAFLKK Unmodified 860.54837 0.54837396 974 P39019 RPS19 40S ribosomal protein S19 yes yes 0 0 0 1 By MS/MS 5 0 1 1 56.471 56.665 3 0.0006403 17347 20211116_3433_TMUAki_TMT10x_P_F5 142.64 102.53 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1079 974 1018 5687 6938 6938 1 ALAAGGVGSIVR Unmodified 1069.6244 0.62439245 193 O15511-2;O15511 ARPC5 Actin-related protein 2/3 complex subunit 5 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 2 1 1 2 45.984 45.873 2 2.8702E-18 12339 20211116_3428_TMUAki_TMT10x_P_F1 218.58 130.82 3408800 5672900 53170 5733400 5526300 5955600 3714000 4958800 5104600 4158100 4791900 3174200 5293700 345050 5848100 5255400 6031100 3905100 5068100 5121100 4094000 4632200 2 2 1 2 2 2 2 2 2 2 2 2038100 3323500 0 3441700 4110200 4592500 2441500 2964100 2938700 2400000 2844200 1897600 3101600 181220 3519900 3898000 4571000 2579200 3079000 2964500 2367200 2746600 1 1 0 1 1 1 1 1 1 1 1 1370700 2349400 53170 2291700 1416100 1363100 1272500 1994700 2165900 1758200 1947700 1276700 2192100 163830 2328100 1357400 1460100 1325900 1989100 2156600 1726900 1885600 1 1 1 1 1 1 1 1 1 1 1 333120000 190130000 142990000 1080 193 1019 5688;5689;5690 6939;6940;6941 6939 3 ALAAGGYDVEK Unmodified 1092.5451 0.54513908 693 P16401 HIST1H1B Histone H1.5 yes yes 0 0 0 0 By MS/MS By MS/MS 3.71 1.03 2 4 4 4 7 7 45.407 45.436 2;3 6.5661E-16 15259 20211116_3441_TMUAki_TMT10x_S_F3 209.6 179.03 34088000 53347000 121710 56388000 79050000 53657000 42521000 37422000 39426000 32325000 48434000 31739000 49790000 3479800 57270000 74880000 54466000 44945000 38715000 40564000 31780000 46444000 13 13 8 13 13 13 13 13 13 13 13 21774000 33538000 35142 35540000 66923000 43198000 27969000 22345000 26340000 20470000 30884000 20274000 31302000 2380900 36230000 63186000 43066000 30356000 23715000 27029000 20070000 29652000 7 7 2 7 7 7 7 7 7 7 7 12313000 19809000 86572 20849000 12127000 10459000 14552000 15077000 13086000 11854000 17550000 11466000 18488000 1098900 21040000 11694000 11400000 14588000 14999000 13535000 11710000 16792000 6 6 6 6 6 6 6 6 6 6 6 5013300000 3148100000 1865200000 1081 693 1020 5691;5692;5693;5694;5695;5696;5697;5698;5699;5700;5701;5702;5703;5704 6942;6943;6944;6945;6946;6947;6948;6949;6950;6951;6952;6953;6954;6955;6956 6951 15 ALAAGGYDVEKNNSR Unmodified 1563.7641 0.76413341 693 P16401 HIST1H1B Histone H1.5 yes yes 0 0 0 1 By MS/MS 5 0 1 1 35.915 36.09 3 1.5467E-20 7946 20211116_3444_TMUAki_TMT10x_S_F5 158.65 118.81 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1082 693 1021 5705 6957 6957 1 ALAAPAAEEKEEAR Unmodified 1454.7365 0.73652168 1484 Q01650 SLC7A5 Large neutral amino acids transporter small subunit 1 yes yes 0 0 0 1 By MS/MS 2 0 1 1 34.469 34.246 3 0.026008 9199 20211116_3429_TMUAki_TMT10x_P_F2 49.482 27.609 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1083 1484 1022 5706 6958 6958 1 ALADDDFLTVTGK Unmodified 1364.6824 0.68236084 911 P33991 MCM4 DNA replication licensing factor MCM4 yes yes 0 0 0 0 By MS/MS By MS/MS 3.85 0.948 1 4 4 4 7 6 68.994 68.863 2;3 1.152E-29 21249 20211116_3444_TMUAki_TMT10x_S_F5 246.78 197.36 76849000 129910000 486160 132910000 87880000 111730000 80967000 88445000 93821000 89221000 99555000 71554000 121230000 6479700 135060000 84086000 114610000 82888000 91124000 95088000 87106000 95860000 18 18 9 18 18 18 18 18 18 18 18 34157000 56259000 310170 58101000 46116000 72217000 43292000 37855000 41871000 38285000 42798000 31804000 52503000 3069100 59353000 44152000 71927000 44017000 40235000 42692000 37373000 41257000 8 8 5 8 8 8 8 8 8 8 8 42692000 73649000 175990 74808000 41763000 39518000 37674000 50591000 51950000 50937000 56756000 39750000 68727000 3410700 75707000 39934000 42684000 38871000 50889000 52396000 49733000 54602000 10 10 4 10 10 10 10 10 10 10 10 8245300000 4637000000 3608300000 1084 911 1023 5707;5708;5709;5710;5711;5712;5713;5714;5715;5716;5717;5718;5719 6959;6960;6961;6962;6963;6964;6965;6966;6967;6968;6969;6970;6971;6972;6973;6974;6975;6976 6974 18 ALADENEFVRDTALR Unmodified 1718.8588 0.85876208 2350 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 52.288 52.068 3 0.001149 15152 20211116_3440_TMUAki_TMT10x_S_F2 68.576 55.173 7235600 12108000 0 12808000 9169800 10952000 7850800 8657000 8411800 7752900 9163300 6736300 11301000 533540 12989000 8753200 11220000 8049700 8890700 8559600 7609200 8816300 2 2 0 2 2 2 2 2 2 2 2 4161600 7074300 0 7388800 5965000 8467300 5316900 4566300 4567800 4194000 4692800 3874800 6602300 359570 7531700 5702500 8471800 5403800 4828400 4684200 4111400 4523100 1 1 0 1 1 1 1 1 1 1 1 3074000 5033700 0 5419500 3204800 2485000 2533900 4090800 3844000 3558900 4470600 2861500 4698400 173970 5457700 3050700 2748700 2645900 4062300 3875500 3497700 4293200 1 1 0 1 1 1 1 1 1 1 1 566600000 225900000 340700000 1085 2350 1024 5720;5721;5722 6977;6978 6978 2 ALADTENLR Unmodified 1001.5142 0.5141733 2853 Q9HAV7 GRPEL1 GrpE protein homolog 1, mitochondrial yes yes 0 0 0 0 By matching By MS/MS 2.33 0.471 2 1 1 2 36.042 35.914 2 0.0018216 8214 20211116_3440_TMUAki_TMT10x_S_F2 93.143 52.365 655750 1149500 7129 1083900 687560 599050 737910 701520 759020 650340 876560 610620 1072300 61456 1103200 660960 642490 746510 706550 775420 637270 841950 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 655750 1149500 7129 1083900 687560 599050 737910 701520 759020 650340 876560 610620 1072300 61456 1103200 660960 642490 746510 706550 775420 637270 841950 2 2 2 2 2 2 2 2 2 2 2 58147000 31929000 26217000 1086 2853 1025 5723;5724;5725 6979;6980 6979 2 ALAEIAK Unmodified 714.42759 0.42759012 777 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 44.575 44.724 2 0.0060531 12259 20211116_3431_TMUAki_TMT10x_P_F4 105.39 8.3197 14038000 22540000 43833 22434000 23001000 26141000 17163000 15379000 18105000 16519000 19100000 13070000 21031000 1180500 22950000 21901000 26160000 17743000 16213000 18413000 16086000 18394000 3 3 1 3 3 3 3 3 3 3 3 10299000 16438000 43833 16327000 19210000 22695000 12955000 11061000 13396000 12018000 14225000 9589100 15338000 921340 16759000 18258000 22466000 13481000 11862000 13638000 11698000 13697000 2 2 1 2 2 2 2 2 2 2 2 3738900 6101100 0 6107700 3791200 3446400 4207600 4317300 4708900 4500400 4874800 3480800 5693000 259130 6190600 3642300 3694700 4261700 4351100 4774400 4387800 4697400 1 1 0 1 1 1 1 1 1 1 1 600580000 434270000 166310000 1087 777 1026 5726;5727;5728;5729;5730 6981;6982;6983;6984;6985 6981 5 ALAEIAKAELDDTPMR Oxidation (M) 1758.8822 0.88219964 777 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 1 1 By MS/MS By MS/MS 3.9 1.58 1 1 2 2 2 2 6 4 62.534 62.448 3 0.00028868 19551 20211116_3431_TMUAki_TMT10x_P_F4 78.285 66.37 66778000 116360000 494710 104850000 103040000 145120000 79060000 145520000 129940000 114190000 106830000 62178000 108540000 6246300 108380000 98206000 145370000 83023000 147000000 129140000 112810000 103770000 17 17 10 17 17 17 17 17 17 17 17 43684000 74331000 315020 67266000 65624000 118970000 57096000 92689000 83283000 72403000 68782000 40675000 69332000 4035400 69895000 62716000 117420000 59172000 94959000 83066000 71549000 66800000 11 11 6 11 11 11 11 11 11 11 11 23093000 42034000 179690 37587000 37411000 26154000 21964000 52833000 46656000 41784000 38048000 21503000 39205000 2210800 38488000 35489000 27948000 23851000 52040000 46078000 41263000 36970000 6 6 4 6 6 6 6 6 6 6 6 9479300000 5266100000 4213200000 1088 777 1027 5731;5732;5733;5734;5735;5736;5737;5738;5739;5740 6986;6987;6988;6989;6990;6991;6992;6993;6994;6995;6996;6997;6998;6999;7000;7001;7002;7003 6993 906 18 ALAEIAKAELDDTPMR Unmodified 1742.8873 0.88728501 777 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 1 By MS/MS By MS/MS 4.57 1.29 1 2 2 2 3 4 69.122 69.124 3 2.008E-23 21716 20211116_3445_TMUAki_TMT10x_S_F6 164.57 151.78 61587000 99560000 309390 101430000 81787000 69538000 65829000 45861000 35471000 47933000 70417000 57342000 92907000 5287400 102870000 78013000 72276000 66668000 47885000 38654000 46728000 66847000 10 10 4 10 10 10 10 10 10 10 10 25361000 38583000 61808 40779000 29447000 39960000 31486000 18625000 14128000 19376000 28602000 23613000 36010000 2117900 41434000 28283000 40279000 31294000 20036000 15646000 18892000 27143000 4 4 1 4 4 4 4 4 4 4 4 36225000 60977000 247580 60655000 52340000 29578000 34343000 27236000 21343000 28557000 41815000 33729000 56897000 3169500 61436000 49730000 31997000 35374000 27850000 23008000 27836000 39704000 6 6 3 6 6 6 6 6 6 6 6 3289200000 1703200000 1586000000 1089 777 1027 5741;5742;5743;5744;5745;5746;5747 7004;7005;7006;7007;7008;7009;7010;7011;7012;7013;7014;7015;7016 7016 13 ALAENSGVK Unmodified 887.47125 0.47124585 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 By matching By MS/MS 4.5 0.5 1 1 1 1 33.613 33.714 2 0.0086645 6862 20211116_3444_TMUAki_TMT10x_S_F5 72.275 39.434 268460 495450 485.63 473450 283290 212410 285390 179650 235870 201820 351800 249970 462220 22917 480640 271710 231750 287840 184970 246240 196190 335780 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 268460 495450 485.63 473450 283290 212410 285390 179650 235870 201820 351800 249970 462220 22917 480640 271710 231750 287840 184970 246240 196190 335780 1 1 1 1 1 1 1 1 1 1 1 52739000 42859000 9879900 1090 1146 1028 5748;5749 7017 7017 1 ALAESWNAAFLESSAK Unmodified 1693.8312 0.83115034 1795 Q15382 RHEB GTP-binding protein Rheb yes yes 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 75.263 75.335 3 1.4021E-10 26267 20211116_3446_TMUAki_TMT10x_S_F7 124.25 103.3 15767000 26600000 457370 26109000 18885000 23448000 20638000 12009000 11016000 12909000 17350000 14684000 24819000 1777100 26630000 18179000 23795000 20545000 12815000 11853000 12571000 16541000 2 2 2 2 2 2 2 2 2 2 2 9243000 15237000 328190 14939000 10991000 16910000 12190000 7722000 7057700 8265800 9928500 8608600 14217000 1096700 15290000 10589000 16899000 12143000 8331100 7506400 8050400 9488800 1 1 1 1 1 1 1 1 1 1 1 6524400 11363000 129180 11170000 7893400 6538500 8448900 4287400 3958600 4643500 7421900 6075800 10602000 680490 11340000 7590400 6896100 8402000 4483400 4346600 4520400 7052400 1 1 1 1 1 1 1 1 1 1 1 1754600000 1106700000 647810000 1091 1795 1029 5750;5751;5752 7018;7019 7019 2 ALAFNGVMFGDRPLK Oxidation (M) 1650.8552 0.85519702 2319 Q8WXA9;Q8WXA9-2 SREK1 Splicing regulatory glutamine/lysine-rich protein 1 yes no 0 0 1 1 By MS/MS 3 0 1 1 60.969 60.542 3 0.00059079 21443 20211116_3441_TMUAki_TMT10x_S_F3 77.078 55.521 3614600 6642000 37834 6006300 3994600 4125300 3968400 7014400 6912200 6069900 5905200 3365800 6195300 340260 6144200 3831900 4383500 4117800 6957700 6867400 5967100 5727700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3614600 6642000 37834 6006300 3994600 4125300 3968400 7014400 6912200 6069900 5905200 3365800 6195300 340260 6144200 3831900 4383500 4117800 6957700 6867400 5967100 5727700 1 1 1 1 1 1 1 1 1 1 1 725820000 0 725820000 1092 2319 1030 5753 7020 7020 2672 1 ALAGAPAGGPCAPALEALLGAGALR Acetyl (Protein N-term) 2286.2154 0.21543586 1477 Q01094 E2F1 Transcription factor E2F1 yes yes 1 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 82.825 82.829 3 4.9019E-38 27552 20211116_3436_TMUAki_TMT10x_P_F8 147.21 130.72 558880 994910 30953 927250 755270 932070 769720 795380 698240 817980 811440 520600 928110 77932 950800 726430 946160 777800 816260 717480 797950 779260 2 2 2 2 2 2 2 2 2 2 2 134090 227330 4078.2 214990 126080 295460 161000 188380 174500 190110 198110 124880 212080 14805 221400 122010 293630 161910 196980 177770 185600 190380 1 1 1 1 1 1 1 1 1 1 1 424790 767580 26874 712270 629200 636610 608720 607000 523740 627870 613330 395720 716020 63127 729400 604420 652530 615890 619280 539710 612350 588880 1 1 1 1 1 1 1 1 1 1 1 104170000 64611000 39561000 1093 1477 1031 5754;5755 7021;7022 7021 2 ALAGCDFLTISPK Unmodified 1391.7119 0.71188683 966 P37837 TALDO1 Transaldolase yes yes 0 0 0 0 By MS/MS By MS/MS 7.33 0.667 1 4 4 5 4 69.453 69.607 2;3 1.4256E-22 22096 20211116_3436_TMUAki_TMT10x_P_F8 208.6 146.4 58230000 97139000 360350 94954000 74403000 92944000 66589000 64261000 55955000 64510000 76665000 54218000 90633000 5085100 96993000 71146000 94165000 67623000 66792000 58125000 62994000 73314000 12 12 9 12 12 12 12 12 12 12 12 32272000 53536000 245670 51715000 41631000 66392000 39651000 35527000 31510000 35360000 41599000 30050000 49948000 2977800 53106000 39880000 66036000 40071000 37674000 32770000 34542000 39816000 7 7 6 7 7 7 7 7 7 7 7 25958000 43603000 114680 43239000 32771000 26553000 26938000 28735000 24445000 29150000 35066000 24169000 40685000 2107400 43887000 31267000 28128000 27552000 29118000 25355000 28452000 33498000 5 5 3 5 5 5 5 5 5 5 5 9928100000 5351600000 4576500000 1094 966 1032 5756;5757;5758;5759;5760;5761;5762;5763;5764 7023;7024;7025;7026;7027;7028;7029;7030;7031;7032;7033;7034 7029 12 ALALAALAAVEPACGSR Acetyl (Protein N-term) 1681.8821 0.88214006 2657 Q9BT67;Q9BT67-2 NDFIP1 NEDD4 family-interacting protein 1 yes no 1 0 0 0 By MS/MS By MS/MS 6.2 0.748 1 2 2 2 3 83.583 83.594 2 2.3066E-60 27544 20211116_3445_TMUAki_TMT10x_S_F6 193.62 175.8 2865800 5227200 90249 5147000 3972000 5104800 4016900 3774800 3737700 3853200 4354300 2669000 4877200 326320 5255800 3814400 5173200 4063500 3907400 3836600 3760000 4181400 6 6 5 6 6 6 6 6 6 6 6 966880 1716100 0 1797900 1222800 2523200 1334500 1286100 1318000 1381200 1530300 900170 1601600 72870 1839200 1174600 2497900 1347300 1372900 1349100 1345000 1469700 1 1 0 1 1 1 1 1 1 1 1 1899000 3511100 90249 3349100 2749200 2581700 2682400 2488600 2419700 2472000 2824000 1768800 3275600 253450 3416600 2639800 2675300 2716200 2534500 2487500 2415000 2711700 5 5 5 5 5 5 5 5 5 5 5 236800000 50146000 186650000 1095 2657 1033 5765;5766;5767;5768;5769 7035;7036;7037;7038;7039;7040;7041 7039 7 ALALAPGPPTR Unmodified 1062.6186 0.61857879 1435 P78559;P78559-2 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 44.302 44.281 2 0.00034476 13775 20211116_3439_TMUAki_TMT10x_S_F1 93.649 67.54 7625700 12507000 39679 13161000 13709000 13969000 8698700 11775000 12195000 9478200 11385000 7100200 11673000 707060 13392000 13018000 14132000 9193700 12014000 12225000 9351500 11008000 4 4 1 4 4 4 4 4 4 4 4 4248800 6608100 0 6895600 10211000 10750000 5412500 6241500 6342100 5010800 5973400 3955800 6167200 401690 7072000 9667800 10612000 5769800 6536600 6398200 4944500 5773700 2 2 0 2 2 2 2 2 2 2 2 3376900 5898600 39679 6265100 3497700 3219400 3286300 5533300 5853100 4467400 5412000 3144400 5505400 305370 6320000 3349900 3519600 3423900 5477200 5826500 4407000 5234400 2 2 1 2 2 2 2 2 2 2 2 390060000 279720000 110350000 1096 1435 1034 5770;5771;5772;5773 7042;7043;7044;7045 7044 4 ALALNCFAPINDQEGAEAK Unmodified 2030.9731 0.97313991 2565 Q96T88;Q96T88-2 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 67.904 67.828 3 2.7943E-12 21169 20211116_3445_TMUAki_TMT10x_S_F6 125.45 114.66 1834400 3555100 0 3630600 2191300 1808700 2040400 1729400 1675300 1847800 2431100 1707900 3317500 144140 3671200 2096500 1953200 2066200 1765900 1747200 1799800 2321800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1834400 3555100 0 3630600 2191300 1808700 2040400 1729400 1675300 1847800 2431100 1707900 3317500 144140 3671200 2096500 1953200 2066200 1765900 1747200 1799800 2321800 1 1 0 1 1 1 1 1 1 1 1 635210000 0 635210000 1097 2565 1035 5774;5775 7046;7047 7047 2 ALALTAR Unmodified 714.43882 0.43882351 1109 P49643 PRIM2 DNA primase large subunit yes yes 0 0 0 0 By MS/MS 8 0 1 1 35.213 35.767 2 0.060212 7711 20211116_3447_TMUAki_TMT10x_S_F8 63.563 16.642 256120 451720 7778.7 419740 300620 260070 293750 296830 313300 282320 369170 238530 421390 29107 428080 288540 275620 298930 299510 319860 276320 354400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 256120 451720 7778.7 419740 300620 260070 293750 296830 313300 282320 369170 238530 421390 29107 428080 288540 275620 298930 299510 319860 276320 354400 1 1 1 1 1 1 1 1 1 1 1 10703000 0 10703000 1098 1109 1036 5776 7048 7048 1 ALANSLACQGK Unmodified 1131.5706 0.57064232 482 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 By MS/MS By MS/MS 7.57 0.495 3 4 3 4 41.184 41.507 2;3 1.2579E-37 10163 20211116_3447_TMUAki_TMT10x_S_F8 277.36 202.14 13309000 22489000 77297 19641000 22132000 19890000 16862000 16334000 16420000 14856000 19314000 12391000 20974000 1136900 20242000 21083000 20168000 17366000 16743000 16826000 14570000 18542000 9 9 3 9 9 9 9 9 9 9 9 4669800 8180900 8963.2 6984700 10666000 11272000 6233700 5729500 6200500 5407400 6693700 4347600 7629200 418950 7274100 10112000 11094000 6553900 6095400 6326900 5294400 6441900 3 3 1 3 3 3 3 3 3 3 3 8639400 14308000 68334 12657000 11466000 8618400 10629000 10605000 10219000 9448600 12621000 8043800 13345000 717920 12968000 10971000 9073600 10812000 10647000 10499000 9275600 12100000 6 6 2 6 6 6 6 6 6 6 6 798470000 381900000 416570000 1099 482 1037 5777;5778;5779;5780;5781;5782;5783 7049;7050;7051;7052;7053;7054;7055;7056;7057;7058 7056 10 ALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEK Unmodified 3807.9214 0.92138569 506 P05386 RPLP1 60S acidic ribosomal protein P1 yes yes 0 0 0 0 By MS/MS By MS/MS 7.32 1.61 2 3 6 27 22 16 74.324 74.339 3;4;5;6 3.297E-34 27367 20211116_3446_TMUAki_TMT10x_S_F7 154.54 149.74 106700000 187450000 1353300 169430000 115460000 156310000 128460000 101720000 92496000 104790000 128530000 99359000 174840000 6570800 173920000 111100000 158820000 128510000 106270000 96952000 102210000 122870000 66 66 39 66 66 66 66 66 66 66 66 54929000 90145000 982240 80881000 48004000 96501000 62237000 51107000 48113000 54148000 64480000 51149000 84080000 4243400 83400000 46429000 96325000 61948000 54344000 50145000 52758000 61695000 48 48 29 48 48 48 48 48 48 48 48 51775000 97305000 371020 88547000 67459000 59805000 66227000 50617000 44384000 50638000 64049000 48210000 90763000 2327400 90522000 64671000 62492000 66565000 51928000 46806000 49455000 61177000 18 18 10 18 18 18 18 18 18 18 18 175890000000 89597000000 86296000000 1100 506 1038 5784;5785;5786;5787;5788;5789;5790;5791;5792;5793;5794;5795;5796;5797;5798;5799;5800;5801;5802;5803;5804;5805;5806;5807;5808;5809;5810;5811;5812;5813;5814;5815;5816;5817;5818;5819;5820;5821 7059;7060;7061;7062;7063;7064;7065;7066;7067;7068;7069;7070;7071;7072;7073;7074;7075;7076;7077;7078;7079;7080;7081;7082;7083;7084;7085;7086;7087;7088;7089;7090;7091;7092;7093;7094;7095;7096;7097;7098;7099;7100;7101;7102;7103;7104;7105;7106;7107;7108;7109;7110;7111;7112;7113;7114;7115;7116;7117;7118;7119;7120;7121;7122;7123;7124 7111 66 ALAPEYAK Unmodified 861.45962 0.45961853 533 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 40.215 40.376 2 0.0023363 10852 20211116_3442_TMUAki_TMT10x_S_F4 110.81 19.742 3713200 6351100 24632 5438300 4867600 3770000 4578100 4039300 4195500 3874800 5121400 3457400 5922800 331450 5587500 4660400 3949600 4647100 4088300 4317800 3791100 4911700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3713200 6351100 24632 5438300 4867600 3770000 4578100 4039300 4195500 3874800 5121400 3457400 5922800 331450 5587500 4660400 3949600 4647100 4088300 4317800 3791100 4911700 2 2 1 2 2 2 2 2 2 2 2 161780000 0 161780000 1101 533 1039 5822;5823 7125;7126 7125 2 ALAPLLLAFVTKPNSALESCSFAR Unmodified 2575.3832 0.38322947 1040 P46060 RANGAP1 Ran GTPase-activating protein 1 yes yes 0 0 0 1 By matching By MS/MS 7.33 0.471 2 1 1 2 80.829 80.846 4 2.2568E-16 26135 20211116_3447_TMUAki_TMT10x_S_F8 122.18 106.92 3115700 4783000 0 5180700 3449100 3325500 4139200 1945500 2090300 2012100 2822500 2901000 4464500 253200 5229400 3323900 3471200 4099000 2049600 2242100 1962300 2700100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3115700 4783000 0 5180700 3449100 3325500 4139200 1945500 2090300 2012100 2822500 2901000 4464500 253200 5229400 3323900 3471200 4099000 2049600 2242100 1962300 2700100 1 1 0 1 1 1 1 1 1 1 1 2140400000 233100000 1907300000 1102 1040 1040 5824;5825;5826 7127 7127 1 ALAPTWEQLALGLEHSETVK Unmodified 2192.1477 0.14773345 2227 Q8NBS9;Q8NBS9-2 TXNDC5 Thioredoxin domain-containing protein 5 yes no 0 0 0 0 By MS/MS By MS/MS 6 0.707 1 2 1 2 2 78.027 78.037 3 3.4097E-13 25309 20211116_3445_TMUAki_TMT10x_S_F6 133.95 113.56 69246000 110680000 25088 122660000 68486000 63211000 80092000 36128000 31135000 42042000 72238000 64464000 103320000 4363200 123400000 65870000 67454000 79118000 38276000 35276000 40817000 68413000 7 7 1 7 7 7 7 7 7 7 7 20299000 30543000 0 33182000 18853000 25672000 21826000 10937000 9083000 12120000 19960000 18898000 28510000 1297500 33552000 18128000 26285000 21589000 11899000 10184000 11789000 18918000 3 3 0 3 3 3 3 3 3 3 3 48947000 80140000 25088 89480000 49633000 37539000 58266000 25191000 22052000 29922000 52278000 45567000 74814000 3065800 89848000 47742000 41168000 57529000 26377000 25092000 29028000 49495000 4 4 1 4 4 4 4 4 4 4 4 4284700000 1926500000 2358200000 1103 2227 1041 5827;5828;5829;5830 7128;7129;7130;7131;7132;7133;7134 7131 7 ALASLATATLESVVQER Unmodified 1757.9523 0.95232811 2674 Q9BUI4 POLR3C DNA-directed RNA polymerase III subunit RPC3 yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 80.317 80.327 3 1.9638E-29 25946 20211116_3447_TMUAki_TMT10x_S_F8 186.77 164.86 4385500 6732000 0 6230500 4925000 4922800 4753900 3816700 2714300 4261600 4961800 4082900 6279800 317740 6372100 4714500 5070900 4767900 3949700 2930300 4143800 4716900 3 3 0 3 3 3 3 3 3 3 3 752180 1321500 0 1282500 696800 1419300 860210 778350 640960 1019600 983010 700220 1233000 44955 1313100 671150 1423100 857210 830940 673800 985880 937690 1 1 0 1 1 1 1 1 1 1 1 3633300 5410500 0 4948100 4228200 3503500 3893700 3038300 2073300 3242000 3978800 3382700 5046900 272780 5058900 4043400 3647800 3910700 3118700 2256500 3157900 3779200 2 2 0 2 2 2 2 2 2 2 2 1479900000 620370000 859580000 1104 2674 1042 5831;5832;5833 7135;7136;7137 7137 3 ALATHPGISFYEEPR Unmodified 1686.8366 0.83657007 1564 Q12789;Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 yes no 0 0 0 0 By MS/MS 5 0 1 1 46.867 47.031 3 0.00070679 12295 20211116_3444_TMUAki_TMT10x_S_F5 70.529 56.271 2089300 3560000 172120 4002900 2180100 1998200 1995000 3271600 3489500 2705100 3184600 1946700 3323500 334900 4022300 2096100 2187900 2079600 3245100 3473800 2665200 3081500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2089300 3560000 172120 4002900 2180100 1998200 1995000 3271600 3489500 2705100 3184600 1946700 3323500 334900 4022300 2096100 2187900 2079600 3245100 3473800 2665200 3081500 1 1 1 1 1 1 1 1 1 1 1 209490000 0 209490000 1105 1564 1043 5834 7138 7138 1 ALAVASK Unmodified 658.40138 0.40137537 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS By MS/MS 7 0.816 1 1 1 2 1 35.316 35.639 2 0.044431 9493 20211116_3435_TMUAki_TMT10x_P_F7 72.138 26.42 719460 1139300 6804.9 1122400 945140 1119100 753610 622460 715850 654190 858070 669910 1063000 66594 1146200 901680 1129100 773270 658890 734960 637610 823340 3 3 2 3 3 3 3 3 3 3 3 557330 857000 4245.3 854960 788950 969910 563240 473940 564370 505980 634590 518940 799670 50850 874070 750900 969850 583150 507860 576590 492850 609990 2 2 1 2 2 2 2 2 2 2 2 162130 282280 2559.6 267480 156190 149210 190380 148520 151490 148200 223470 150980 263340 15744 272150 150780 159290 190120 151030 158370 144760 213350 1 1 1 1 1 1 1 1 1 1 1 36777000 23393000 13384000 1106 935 1044 5835;5836;5837 7139 7139 1 ALAVGGLGSIIR Unmodified 1125.687 0.68699271 2620 Q9BPX5 ARPC5L Actin-related protein 2/3 complex subunit 5-like protein yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 65.188 64.806 2 3.1279E-05 22183 20211116_3430_TMUAki_TMT10x_P_F3 99.855 74.118 9763000 17694000 82580 13336000 9721500 13009000 9682800 17182000 19014000 15805000 15426000 9090900 16494000 885800 13908000 9325400 13367000 10113000 17217000 18808000 15493000 14992000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9763000 17694000 82580 13336000 9721500 13009000 9682800 17182000 19014000 15805000 15426000 9090900 16494000 885800 13908000 9325400 13367000 10113000 17217000 18808000 15493000 14992000 1 1 1 1 1 1 1 1 1 1 1 930200000 345440000 584760000 1107 2620 1045 5838;5839;5840 7140;7141 7140 2 ALAVVYGPHEIR Unmodified 1323.7299 0.72992016 2888 Q9NPD3 EXOSC4 Exosome complex component RRP41 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 43.314 43.828 3 3.7366E-09 13250 20211116_3446_TMUAki_TMT10x_S_F7 147.63 127.84 1395900 2202500 10342 2271100 2275800 2514800 1715800 2249000 2068600 1791900 2110000 1299800 2055400 137700 2315700 2168700 2540900 1780600 2286400 2090400 1768900 2034200 2 2 2 2 2 2 2 2 2 2 2 874660 1300800 170.95 1390700 1725300 1964400 1257800 1364200 1214100 1065400 1329100 814400 1214200 84589 1421000 1642600 1952300 1299000 1408400 1241200 1052800 1278600 1 1 1 1 1 1 1 1 1 1 1 521290 901650 10171 880440 550480 550410 458000 884790 854430 726470 780860 485450 841260 53106 894750 526120 588590 481680 877980 849270 716030 755540 1 1 1 1 1 1 1 1 1 1 1 663240000 495800000 167450000 1108 2888 1046 5841;5842 7142;7143 7143 2 ALCAEADRLQQSHPLSATQIQVK Unmodified 2563.3177 0.3176691 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 51.232 51.226 4 9.2713E-58 14084 20211116_3447_TMUAki_TMT10x_S_F8 237.14 221.01 4471600 8706000 114800 8913000 6964200 9190200 5245500 6811800 5641100 6263600 6885400 4164300 8124400 512620 9082300 6641300 9291800 5422900 7029400 5765700 6140000 6603600 3 3 3 3 3 3 3 3 3 3 3 2673300 5190600 59391 4984400 5294500 7657300 3924700 4345000 3437100 3861400 4134700 2489500 4842600 313690 5139400 5045800 7561500 4037600 4570400 3542800 3791200 3967000 2 2 2 2 2 2 2 2 2 2 2 1798300 3515400 55405 3928600 1669700 1532900 1320800 2466800 2203900 2402200 2750700 1674800 3281800 198930 3942800 1595600 1730300 1385300 2459000 2222900 2348800 2636600 1 1 1 1 1 1 1 1 1 1 1 1857500000 1146100000 711480000 1109 1663 1047 5843;5844 7144;7145;7146 7146 3 ALCDLGPWVK Unmodified 1157.5903 0.59031513 2175 Q8N0U8;Q8N0U8-2 VKORC1L1 Vitamin K epoxide reductase complex subunit 1-like protein 1 yes no 0 0 0 0 By MS/MS 8 0 1 1 68.605 68.706 2 0.030743 21748 20211116_3436_TMUAki_TMT10x_P_F8 64.485 42.146 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1110 2175 1048 5845 7147 7147 1 ALCDPLEEVR Unmodified 1200.5809 0.58087266 2350 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 54.424 54.044 2 0.0081878 18761 20211116_3441_TMUAki_TMT10x_S_F3 70.816 52.086 1912200 3120400 0 3679500 1930600 1554900 1846200 2346500 2210000 2182400 2736200 1780400 2913700 145270 3682400 1848100 1732800 1888300 2340900 2251100 2138200 2623200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1912200 3120400 0 3679500 1930600 1554900 1846200 2346500 2210000 2182400 2736200 1780400 2913700 145270 3682400 1848100 1732800 1888300 2340900 2251100 2138200 2623200 1 1 0 1 1 1 1 1 1 1 1 81138000 0 81138000 1111 2350 1049 5846 7148 7148 1 ALCELESGIPAAESQIVYAERPLTDNHR Unmodified 3138.5404 0.54041141 1943 Q5TDH0;Q5TDH0-3;Q5TDH0-2 DDI2 Protein DDI1 homolog 2 yes no 0 0 0 1 By MS/MS 2 0 1 1 71.897 71.639 4 1.2952E-05 24406 20211116_3429_TMUAki_TMT10x_P_F2 63.701 52.994 5343400 8448400 0 7536200 5126600 12060000 5050200 4726800 4342600 4679400 4872900 4975100 7879800 415230 7820200 4912100 11842000 5104700 5174500 4467600 4572100 4684300 1 1 0 1 1 1 1 1 1 1 1 5343400 8448400 0 7536200 5126600 12060000 5050200 4726800 4342600 4679400 4872900 4975100 7879800 415230 7820200 4912100 11842000 5104700 5174500 4467600 4572100 4684300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 712010000 712010000 0 1112 1943 1050 5847 7149 7149 1 ALCHALTFPSLQR Unmodified 1512.7871 0.78711746 2528 Q96P11;Q96P11-2;Q96P11-4;Q96P11-5;Q63ZY6;Q3KNT7;Q63ZY6-4;Q3KNT7-2;Q3KNT7-3;Q63ZY6-5 NSUN5;NSUN5P2;NSUN5P1 Probable 28S rRNA (cytosine-C(5))-methyltransferase;Putative methyltransferase NSUN5C;Putative NOL1/NOP2/Sun domain family member 5B yes no 0 0 0 0 By MS/MS 3 0 1 1 53.994 53.613 3 0.0012184 18619 20211116_3441_TMUAki_TMT10x_S_F3 71.806 60.571 1526500 2535800 0 2726000 1493100 1323100 1335700 2004800 1891100 1839200 2092800 1421300 2366900 115390 2746600 1427000 1449700 1380300 1999000 1906700 1803000 2012600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1526500 2535800 0 2726000 1493100 1323100 1335700 2004800 1891100 1839200 2092800 1421300 2366900 115390 2746600 1427000 1449700 1380300 1999000 1906700 1803000 2012600 1 1 0 1 1 1 1 1 1 1 1 78461000 0 78461000 1113 2528 1051 5848 7150 7150 1 ALCIDQLDVFLQK Unmodified 1561.8174 0.81741453 1940 Q5T8P6;Q5T8P6-2;Q5T8P6-3;Q5T8P6-6 RBM26 RNA-binding protein 26 yes no 0 0 0 0 By MS/MS By matching 7 0 2 1 1 79.659 79.695 3 8.289E-05 27729 20211116_3435_TMUAki_TMT10x_P_F7 93.011 63.204 3028400 4919700 66153 5085400 3065700 5282900 3412700 3087500 3107600 3374800 3556900 2820300 4591200 313250 5179200 2952200 5320300 3434100 3258600 3190700 3284100 3417300 1 1 1 1 1 1 1 1 1 1 1 3028400 4919700 66153 5085400 3065700 5282900 3412700 3087500 3107600 3374800 3556900 2820300 4591200 313250 5179200 2952200 5320300 3434100 3258600 3190700 3284100 3417300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 808490000 360400000 448090000 1114 1940 1052 5849;5850 7151 7151 1 ALCLCHTVEIK Unmodified 1342.6737 0.67372718 2220 Q8NB49;Q8NB49-2;Q8NB49-3;Q8NB49-4 ATP11C Phospholipid-transporting ATPase IG yes no 0 0 0 0 By MS/MS 7 0 1 1 47.292 47.775 3 0.016926 14961 20211116_3446_TMUAki_TMT10x_S_F7 55.806 38.605 3017800 5008000 13331 5725300 2976400 2483200 2570000 3376800 3349500 3250500 4487700 2810000 4675700 262040 5741600 2844500 2749800 2652300 3384400 3413800 3179900 4293900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3017800 5008000 13331 5725300 2976400 2483200 2570000 3376800 3349500 3250500 4487700 2810000 4675700 262040 5741600 2844500 2749800 2652300 3384400 3413800 3179900 4293900 1 1 1 1 1 1 1 1 1 1 1 122750000 0 122750000 1115 2220 1053 5851 7152 7152 1 ALCYLVLK Unmodified 978.55722 0.55722409 1829 Q15785 TOMM34 Mitochondrial import receptor subunit TOM34 yes yes 0 0 0 0 By MS/MS 3 0 1 1 69.595 69.154 2 0.0014237 24985 20211116_3441_TMUAki_TMT10x_S_F3 122.15 84.509 3768800 7427700 0 6059800 5227600 4467300 4069000 6142600 5357800 5333200 5923100 3508800 6925800 299710 6254800 4981200 4686900 4227800 6136600 5414300 5242000 5696300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3768800 7427700 0 6059800 5227600 4467300 4069000 6142600 5357800 5333200 5923100 3508800 6925800 299710 6254800 4981200 4686900 4227800 6136600 5414300 5242000 5696300 1 1 0 1 1 1 1 1 1 1 1 167490000 0 167490000 1116 1829 1054 5852 7153 7153 1 ALDDMISTLK Unmodified 1105.5689 0.56891099 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 By MS/MS By MS/MS 5.25 0.829 1 1 2 2 2 72.648 72.63 2 6.8694E-10 22757 20211116_3434_TMUAki_TMT10x_P_F6 168.83 114.67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1117 1094 1055 5853;5854;5855;5856 7154;7155;7156;7157 7155 4 ALDDMISTLKK Unmodified 1233.6639 0.663874 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 1 By MS/MS 7.5 0.5 1 1 2 66.171 66.526 3 9.4622E-09 20853 20211116_3436_TMUAki_TMT10x_P_F8 155.99 112.36 11433000 17772000 362290 23284000 32018000 24104000 17991000 8628400 7260600 9109800 14479000 10648000 16604000 1573900 23377000 30370000 24157000 18650000 9568200 8112200 8877300 13744000 2 2 2 2 2 2 2 2 2 2 2 11433000 17772000 362290 23284000 32018000 24104000 17991000 8628400 7260600 9109800 14479000 10648000 16604000 1573900 23377000 30370000 24157000 18650000 9568200 8112200 8877300 13744000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 989610000 989610000 0 1118 1094 1056 5857;5858 7158;7159 7159 2 ALDEGDIALLK Unmodified 1156.634 0.63395408 945 P35998 PSMC2 26S protease regulatory subunit 7 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.957 1 2 2 1 3 3 67.466 67.339 2 2.4882E-14 24242 20211116_3441_TMUAki_TMT10x_S_F3 159.4 84.026 29918000 48668000 221890 50695000 41923000 52666000 34476000 37243000 36461000 33812000 39158000 27858000 45420000 2832000 51604000 40023000 53184000 35422000 38542000 37102000 33164000 37690000 4 4 3 4 4 4 4 4 4 4 4 21229000 34359000 166100 35068000 33598000 44669000 27622000 25586000 25392000 23858000 27256000 19768000 32063000 2064700 35868000 32074000 44485000 28262000 26925000 25996000 23372000 26235000 3 3 2 3 3 3 3 3 3 3 3 8689000 14309000 55791 15628000 8325000 7996700 6854200 11658000 11069000 9953600 11902000 8090700 13357000 767270 15735000 7948800 8699500 7159900 11617000 11106000 9791400 11455000 1 1 1 1 1 1 1 1 1 1 1 2077400000 1284200000 793200000 1119 945 1057 5859;5860;5861;5862;5863;5864 7160;7161;7162;7163;7164;7165;7166 7165 7 ALDEVTSSQPPPLPPPPPPAQETQEPSPILDSEETR Unmodified 3845.8847 0.88470864 1858 Q16643;Q16643-3;Q16643-2 DBN1 Drebrin yes no 0 0 0 0 By MS/MS By MS/MS 2.83 0.687 2 3 1 3 3 72.632 72.449 4;5 2.2053E-31 25195 20211116_3430_TMUAki_TMT10x_P_F3 153.69 144.06 18944000 30378000 222020 30045000 18820000 29401000 21813000 21535000 20460000 22087000 23227000 17639000 28345000 1411800 30665000 18128000 29815000 21927000 22308000 20972000 21549000 22321000 17 17 10 17 17 17 17 17 17 17 17 10551000 16616000 177970 16471000 9672600 20520000 11991000 12586000 11892000 12499000 13393000 9825000 15504000 944890 16874000 9338200 20476000 12039000 13195000 12156000 12211000 12873000 10 10 7 10 10 10 10 10 10 10 10 8392300 13761000 44045 13574000 9147800 8881400 9821200 8948200 8567700 9587900 9834400 7814300 12840000 466870 13791000 8790100 9338800 9888100 9113700 8816000 9337700 9447700 7 7 3 7 7 7 7 7 7 7 7 8453700000 4731900000 3721800000 1120 1858 1058 5865;5866;5867;5868;5869;5870 7167;7168;7169;7170;7171;7172;7173;7174;7175;7176;7177;7178;7179;7180;7181;7182;7183 7171 17 ALDGPEQMELEEGK Acetyl (Protein N-term) 1586.7134 0.71340297 1337 P62195 PSMC5 26S protease regulatory subunit 8 yes yes 1 0 0 0 By MS/MS 1 0 1 1 66.374 66.374 2 0.014088 20704 20211116_3428_TMUAki_TMT10x_P_F1 62.466 43.851 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1121 1337 1059 5871 7184 7184 1 ALDIAENEMPGLMR 2 Oxidation (M) 1590.7382 0.73817794 786 P23526 AHCY Adenosylhomocysteinase yes yes 0 0 2 0 By MS/MS By MS/MS 2.75 0.968 1 2 3 2 5 3 49.482 49.408 2;3 0.0015311 15727 20211116_3430_TMUAki_TMT10x_P_F3 66.509 53.529 23017000 40779000 272490 41927000 28038000 31592000 23467000 31920000 35599000 27311000 32238000 21433000 38056000 2204600 42537000 26784000 32829000 24418000 32300000 35566000 26863000 31203000 11 11 9 11 11 11 11 11 11 11 11 8667900 15043000 106610 14986000 15302000 19466000 11773000 11654000 13472000 9829200 12246000 8071300 14036000 895350 15359000 14589000 19379000 12179000 12189000 13588000 9674900 11851000 5 5 4 5 5 5 5 5 5 5 5 14349000 25737000 165880 26941000 12736000 12126000 11694000 20266000 22127000 17482000 19992000 13361000 24019000 1309300 27178000 12195000 13450000 12239000 20111000 21978000 17188000 19352000 6 6 5 6 6 6 6 6 6 6 6 2575800000 1786700000 789110000 1122 786 1060 5872;5873;5874;5875;5876;5877;5878;5879 7185;7186;7187;7188;7189;7190;7191;7192;7193;7194;7195 7187 924;925 11 ALDIAENEMPGLMR Oxidation (M) 1574.7433 0.74326331 786 P23526 AHCY Adenosylhomocysteinase yes yes 0 0 1 0 By MS/MS 2.5 0.5 1 1 2 62.472 62.194 3 0.019013 20595 20211116_3429_TMUAki_TMT10x_P_F2 46.318 35.373 5219300 7752600 136860 8053900 5746400 8496000 6267300 4884300 4034400 4354800 6775000 4860700 7235100 567650 8201600 5531300 8546700 6260800 5132500 4299200 4274900 6450700 2 2 2 2 2 2 2 2 2 2 2 5219300 7752600 136860 8053900 5746400 8496000 6267300 4884300 4034400 4354800 6775000 4860700 7235100 567650 8201600 5531300 8546700 6260800 5132500 4299200 4274900 6450700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 331920000 331920000 0 1123 786 1060 5880;5881 7196;7197 7196 924;925 2 ALDIAENEMPGLMR Unmodified 1558.7483 0.74834869 786 P23526 AHCY Adenosylhomocysteinase yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 4 2 2 70.653 70.321 2;3 2.4365E-14 24364 20211116_3430_TMUAki_TMT10x_P_F3 143.17 105.45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1124 786 1060 5882;5883;5884;5885 7198;7199;7200;7201 7198 4 ALDIDLDKPLADSEKLPIQK Unmodified 2221.2206 0.22056405 120 O14617;O14617-2;O14617-5;O14617-3 AP3D1 AP-3 complex subunit delta-1 yes no 0 0 0 2 By MS/MS 6 0 1 1 68.904 68.827 4 0.00019715 21579 20211116_3445_TMUAki_TMT10x_S_F6 67.396 53.666 7649500 13671000 65828 10943000 10116000 9468600 9086700 11075000 10673000 10865000 11248000 7123000 12746000 730090 11334000 9677900 9773000 9319900 11173000 10809000 10620000 10833000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7649500 13671000 65828 10943000 10116000 9468600 9086700 11075000 10673000 10865000 11248000 7123000 12746000 730090 11334000 9677900 9773000 9319900 11173000 10809000 10620000 10833000 1 1 1 1 1 1 1 1 1 1 1 798010000 0 798010000 1125 120 1061 5886 7202 7202 1 ALDIPLVK Unmodified 867.54295 0.54295423 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 By MS/MS By MS/MS 6.25 0.433 3 1 1 3 64.663 64.644 2 0.0018312 19872 20211116_3445_TMUAki_TMT10x_S_F6 109.86 71.729 9574500 16323000 259670 17005000 13679000 16098000 11681000 11272000 11214000 11036000 12884000 8916800 15233000 1093300 17286000 13081000 16347000 11939000 11697000 11488000 10788000 12377000 2 2 2 2 2 2 2 2 2 2 2 5387200 9249600 70192 9666500 9191600 11835000 7101200 6753600 6599200 6264900 7301100 5016500 8632400 565340 9864400 8765000 11809000 7296800 7108400 6760500 6138700 7021300 1 1 1 1 1 1 1 1 1 1 1 4187300 7073200 189480 7338200 4487300 4262700 4580200 4518500 4614800 4771200 5583400 3900200 6601000 527950 7421500 4316400 4538000 4642100 4588800 4727600 4649400 5356100 1 1 1 1 1 1 1 1 1 1 1 604050000 310350000 293700000 1126 1997 1062 5887;5888;5889;5890 7203;7204;7205;7206 7205 4 ALDLADMITR Unmodified 1117.5801 0.58014438 1129 P49916;P49916-3;P49916-4;P49916-2 LIG3 DNA ligase 3 yes no 0 0 0 0 By MS/MS 5 0 1 1 70.206 70.223 2 0.011298 21855 20211116_3444_TMUAki_TMT10x_S_F5 64.927 36.44 4101300 6318700 63087 6753000 4608500 3738300 4095300 3994800 3410400 4277900 5019000 3819200 5897600 405920 6813400 4409800 4000100 4159700 4057200 3556500 4166400 4791900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4101300 6318700 63087 6753000 4608500 3738300 4095300 3994800 3410400 4277900 5019000 3819200 5897600 405920 6813400 4409800 4000100 4159700 4057200 3556500 4166400 4791900 1 1 1 1 1 1 1 1 1 1 1 273430000 0 273430000 1127 1129 1063 5891 7207 7207 1 ALDLDSSCK Unmodified 1007.4594 0.45936054 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 43.68 43.656 2 6.0988E-06 12234 20211116_3442_TMUAki_TMT10x_S_F4 161.92 72.973 3179500 5502800 52074 5208900 3940800 3857800 3741700 3330800 3765200 3276300 4401900 2960800 5133600 322800 5314500 3776800 4001600 3806500 3411500 3852000 3202100 4226700 3 3 3 3 3 3 3 3 3 3 3 756910 1158700 1293.4 1138300 1289900 1391500 920080 730080 776920 722580 930850 704770 1081100 71423 1166500 1227600 1387100 948180 775450 802110 706020 893190 1 1 1 1 1 1 1 1 1 1 1 2422600 4344000 50781 4070600 2651000 2466400 2821600 2600700 2988300 2553700 3471100 2256000 4052400 251370 4148000 2549200 2614500 2858300 2636000 3049900 2496000 3333500 2 2 2 2 2 2 2 2 2 2 2 251710000 38018000 213690000 1128 897 1064 5892;5893;5894 7208;7209;7210 7210 3 ALDLDSSCKEAADGYQR Unmodified 1897.8476 0.84760504 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 1 By MS/MS 4 0 1 1 43.449 43.664 3 2.7685E-30 12203 20211116_3442_TMUAki_TMT10x_S_F4 172.95 155.25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1129 897 1065 5895 7211 7211 1 ALDLFSDNAPPPELLEIINEDIAK Unmodified 2636.3585 0.35851409 1769 Q15084;Q15084-5;Q15084-3;Q15084-4;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 0 By MS/MS By MS/MS 2.4 0.8 4 1 3 2 83.041 83.04 3;4 2.3642E-29 28984 20211116_3429_TMUAki_TMT10x_P_F2 167.59 148.82 7501400 11647000 83468 11766000 7976500 8992600 8570400 5723500 5745900 6152600 8604500 6984900 10868000 671730 11954000 7665900 9258700 8574900 5997000 6070500 5991300 8211900 9 9 6 9 9 9 9 9 9 9 9 3211000 4811200 34743 5193200 2830300 4573500 3193500 2093700 2331200 2574100 3497300 2990000 4490800 288620 5261700 2724800 4641700 3193600 2268200 2450700 2494200 3337600 4 4 3 4 4 4 4 4 4 4 4 4290300 6835600 48725 6573000 5146100 4419100 5376900 3629800 3414700 3578600 5107200 3994800 6377300 383110 6691900 4941100 4617000 5381200 3728800 3619800 3497100 4874300 5 5 3 5 5 5 5 5 5 5 5 783110000 594000000 189110000 1130 1769 1066 5896;5897;5898;5899;5900 7212;7213;7214;7215;7216;7217;7218;7219;7220 7213 9 ALDMSYDHKPEDEVELAR Oxidation (M) 2132.9684 0.96844846 183 O15355 PPM1G Protein phosphatase 1G yes yes 0 0 1 1 By MS/MS By MS/MS 2 0 2 1 1 43.467 43.329 4 6.0724E-08 12837 20211116_3429_TMUAki_TMT10x_P_F2 103.88 94.319 1839900 3263100 42325 3687900 2651100 3149300 1907400 3124100 3435300 2693400 3004900 1713500 3046400 203350 3724200 2525800 3241000 2020900 3164700 3412700 2648200 2912000 3 3 3 3 3 3 3 3 3 3 3 715510 1207300 18864 1437000 1707100 2164200 1075800 1212300 1351000 1075600 1087700 666350 1127400 90789 1460600 1622100 2138500 1132700 1276500 1353000 1056100 1057400 1 1 1 1 1 1 1 1 1 1 1 1124400 2055700 23460 2251000 944000 985120 831610 1911800 2084300 1617800 1917200 1047100 1919000 112560 2263700 903740 1102500 888190 1888200 2059700 1592100 1854600 2 2 2 2 2 2 2 2 2 2 2 304560000 252540000 52018000 1131 183 1067 5901;5902 7221;7222;7223 7221 135 3 ALDMSYDHKPEDEVELAR Unmodified 2116.9735 0.97353384 183 O15355 PPM1G Protein phosphatase 1G yes yes 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 48.686 48.837 4 0.00028844 13859 20211116_3431_TMUAki_TMT10x_P_F4 69.422 58.478 18608000 32488000 87754 33194000 22425000 17895000 19674000 17563000 16923000 17518000 24599000 17326000 30318000 1515700 33585000 21428000 19166000 20015000 17872000 17609000 17111000 23492000 2 2 1 2 2 2 2 2 2 2 2 2746500 4204100 87754 4747400 5499100 5730000 4072700 2982600 2797400 3051500 3584300 2557900 3924900 348040 4819500 5242200 5715000 4166200 3173300 2929600 2977500 3433300 1 1 1 1 1 1 1 1 1 1 1 15862000 28284000 0 28447000 16926000 12165000 15601000 14580000 14126000 14466000 21014000 14768000 26393000 1167600 28765000 16185000 13451000 15849000 14699000 14680000 14133000 20059000 1 1 0 1 1 1 1 1 1 1 1 963940000 526260000 437680000 1132 183 1067 5903;5904 7224 7224 1 ALDPADQHLR Acetyl (Protein N-term) 1176.5887 0.58873523 2097 Q7Z7K0 CMC1 COX assembly mitochondrial protein homolog yes yes 1 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 36.11 36.091 2 2.8456E-07 8125 20211116_3440_TMUAki_TMT10x_S_F2 98.629 87.261 792460 1332000 25830 1508400 1336400 1205900 838380 1096400 994310 842900 1094500 738060 1243600 97392 1521800 1270500 1244700 881270 1112700 1008300 833670 1052700 2 2 2 2 2 2 2 2 2 2 2 399880 642650 18481 716340 991970 891740 492620 579300 495020 397960 482600 372470 599940 58669 728200 939710 890600 525870 599330 503050 396140 465930 1 1 1 1 1 1 1 1 1 1 1 392580 689380 7349.2 792020 344460 314160 345760 517080 499290 444940 611900 365590 643650 38723 793590 330760 354080 355410 513330 505220 437530 586790 1 1 1 1 1 1 1 1 1 1 1 101630000 46614000 55015000 1133 2097 1068 5905;5906;5907 7225;7226;7227 7227 3 ALDQASEEIWNDFR Unmodified 1692.7744 0.77436375 1141 P50579;P50579-3;P50579-2 METAP2 Methionine aminopeptidase 2 yes no 0 0 0 0 By MS/MS 1 0 1 1 77.8 77.8 2 0.0075526 25368 20211116_3428_TMUAki_TMT10x_P_F1 62.088 44.356 1902700 3188400 3167.9 3073400 1715800 3558100 2031600 1634700 1616100 2252300 2243500 1771600 2974700 158080 3150700 1653300 3551600 2031400 1777600 1684500 2174200 2144800 1 1 1 1 1 1 1 1 1 1 1 1902700 3188400 3167.9 3073400 1715800 3558100 2031600 1634700 1616100 2252300 2243500 1771600 2974700 158080 3150700 1653300 3551600 2031400 1777600 1684500 2174200 2144800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 545530000 545530000 0 1134 1141 1069 5908 7228 7228 1 ALDQFVNFSEQK Unmodified 1424.6936 0.69359423 3219 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 5.14 0.833 2 2 3 4 3 68.701 68.696 2;3 2.346E-06 22290 20211116_3433_TMUAki_TMT10x_P_F5 114.82 87.847 18422000 31589000 227000 31382000 24163000 33036000 21360000 25296000 23439000 23491000 25338000 17154000 29475000 1819300 32054000 23112000 33379000 21877000 26056000 23822000 23017000 24384000 5 5 5 5 5 5 5 5 5 5 5 11430000 18750000 168430 18705000 15580000 26133000 15194000 15801000 14015000 14694000 15303000 10643000 17496000 1162700 19197000 14939000 25932000 15395000 16554000 14355000 14396000 14723000 3 3 3 3 3 3 3 3 3 3 3 6992200 12839000 58563 12677000 8583800 6902900 6165700 9495000 9424500 8796800 10035000 6510900 11979000 656580 12857000 8173300 7446600 6481500 9502200 9466900 8620200 9661600 2 2 2 2 2 2 2 2 2 2 2 3138600000 1692200000 1446400000 1135 3219 1070 5909;5910;5911;5912;5913;5914;5915 7229;7230;7231;7232;7233;7234;7235 7230 7 ALDSNSLENDDLSAPGREPGHFNPESR Unmodified 2923.3333 0.33325541 1882 Q32MZ4;Q32MZ4-3;Q32MZ4-2 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 45.354 45.192 4 1.4038E-77 12367 20211116_3440_TMUAki_TMT10x_S_F2 250.82 234.2 1710000 2877000 30355 3324100 2559600 3105700 2136400 2321400 2564800 2125000 2279200 1592400 2686200 149530 3356300 2445000 3159700 2202400 2393900 2580400 2083500 2207500 5 5 3 5 5 5 5 5 5 5 5 1049800 1791400 9186.2 1935500 2112300 2589400 1686400 1344600 1523300 1259400 1269600 977510 1672100 85767 1974100 2015200 2569600 1727800 1427400 1547800 1233500 1232500 3 3 2 3 3 3 3 3 3 3 3 660250 1085600 21169 1388700 447340 516290 450050 976790 1041500 865630 1009600 614850 1014100 63762 1382200 429780 590120 474670 966560 1032600 850000 974920 2 2 1 2 2 2 2 2 2 2 2 707480000 453340000 254140000 1136 1882 1071 5916;5917;5918;5919 7236;7237;7238;7239;7240 7239 5 ALDTMNFDVIK Oxidation (M) 1281.6275 0.6274885 634;1619 P11940;P11940-2;Q13310;Q13310-2;Q13310-3 PABPC1;PABPC4 Polyadenylate-binding protein 1;Polyadenylate-binding protein 4 no no 0 0 1 0 By MS/MS By MS/MS 4.75 0.661 3 4 1 3 5 61.389 61.445 2;3 0.00082442 19338 20211116_3433_TMUAki_TMT10x_P_F5 79.23 51.488 24088000 40030000 187140 42838000 38619000 50192000 30716000 38766000 39616000 31926000 34328000 22429000 37363000 2207100 43614000 36831000 50422000 31845000 39786000 39725000 31463000 33279000 5 5 3 5 5 5 5 5 5 5 5 16752000 27733000 162890 29819000 31549000 43760000 24513000 26247000 27054000 21595000 23673000 15599000 25886000 1745800 30482000 30083000 43327000 25311000 27431000 27292000 21283000 22941000 3 3 2 3 3 3 3 3 3 3 3 7336800 12297000 24251 13019000 7070000 6432200 6202700 12519000 12561000 10331000 10655000 6830100 11477000 461350 13132000 6747900 7095800 6533900 12356000 12433000 10180000 10337000 2 2 1 2 2 2 2 2 2 2 2 2727300000 1438300000 1289000000 1137 634;1619 1072 5920;5921;5922;5923;5924;5925;5926;5927 7241;7242;7243;7244;7245;7246;7247 7244 659 7 ALDTMNFDVIK Unmodified 1265.6326 0.63257388 634;1619 P11940;P11940-2;Q13310;Q13310-2;Q13310-3 PABPC1;PABPC4 Polyadenylate-binding protein 1;Polyadenylate-binding protein 4 no no 0 0 0 0 By MS/MS By MS/MS 5.8 0.748 2 2 1 3 2 70.87 70.854 2 2.8978E-08 22386 20211116_3445_TMUAki_TMT10x_S_F6 152.7 100.7 42757000 79376000 76869 79052000 50268000 59966000 49022000 34187000 31359000 37459000 53340000 39805000 74065000 2929800 80384000 48122000 61687000 49243000 36158000 33455000 36449000 50775000 4 4 1 4 4 4 4 4 4 4 4 19648000 35718000 0 34548000 24065000 38246000 25794000 16810000 16285000 18443000 24241000 18291000 33325000 1191200 35383000 23086000 38252000 25779000 18222000 17266000 17945000 23139000 2 2 0 2 2 2 2 2 2 2 2 23108000 43657000 76869 44504000 26203000 21720000 23228000 17377000 15074000 19016000 29098000 21514000 40740000 1738600 45001000 25036000 23435000 23464000 17936000 16190000 18504000 27636000 2 2 1 2 2 2 2 2 2 2 2 1653800000 678790000 975030000 1138 634;1619 1072 5928;5929;5930;5931;5932 7248;7249;7250;7251;7252 7252 5 ALDVDYR Unmodified 850.41848 0.418482 2740 Q9BZJ0;Q9BZJ0-2;Q9BZJ0-3 CRNKL1 Crooked neck-like protein 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 37.272 37.298 2 0.042774 10841 20211116_3430_TMUAki_TMT10x_P_F3 73.039 37.933 182250 291460 1691.5 330340 442510 324920 234630 177040 176320 159750 230940 169710 272110 20331 334170 419170 328020 247060 186950 183870 156730 221090 1 1 1 1 1 1 1 1 1 1 1 182250 291460 1691.5 330340 442510 324920 234630 177040 176320 159750 230940 169710 272110 20331 334170 419170 328020 247060 186950 183870 156730 221090 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3608000 3608000 0 1139 2740 1073 5933 7253 7253 1 ALDVGSGSGILTACFAR Unmodified 1693.8458 0.84575455 764 P22061;P22061-2 PCMT1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 6 2.92 2 2 4 4 4 69.422 69.368 2;3 5.168E-201 23921 20211116_3439_TMUAki_TMT10x_S_F1 426.11 371.13 16326000 27058000 52564 25677000 20008000 24508000 19596000 16152000 14176000 16494000 19461000 15200000 25243000 1344700 26275000 19171000 24851000 19731000 16854000 14847000 16095000 18610000 6 6 2 6 6 6 6 6 6 6 6 9268400 15286000 52564 14277000 10390000 16918000 11665000 8760100 7723300 8805200 10425000 8630000 14260000 804560 14675000 9995800 16888000 11643000 9319700 8125500 8597700 9973000 3 3 2 3 3 3 3 3 3 3 3 7057300 11772000 0 11400000 9618400 7589900 7931500 7391800 6453000 7688600 9036100 6570400 10983000 540120 11600000 9174900 7962700 8087700 7534400 6721200 7496900 8636900 3 3 0 3 3 3 3 3 3 3 3 6395400000 3183200000 3212200000 1140 764 1074 5934;5935;5936;5937;5938;5939;5940;5941 7254;7255;7256;7257;7258;7259;7260;7261;7262 7260 9 ALDVTDKEGEEREDADVSVTQR Unmodified 2461.1569 0.15685417 2972 Q9NVI1;Q9NVI1-2;Q9NVI1-1 FANCI Fanconi anemia group I protein yes no 0 0 0 2 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 41.197 41.022 4 3.2804E-45 11941 20211116_3429_TMUAki_TMT10x_P_F2 216.67 193.69 6179700 10098000 133230 11616000 10031000 9648900 6442000 6425200 7180800 5684200 7801400 5754700 9428100 672730 11713000 9534400 9878600 6744900 6673200 7294900 5582000 7506500 4 4 3 4 4 4 4 4 4 4 4 3693200 5769900 90569 6875600 7978200 7837600 4350700 3589700 3944400 3127300 4337700 3439200 5388000 432900 6950500 7563000 7829600 4590200 3850300 4044500 3073300 4172300 2 2 1 2 2 2 2 2 2 2 2 2486500 4328100 42662 4739900 2052300 1811300 2091300 2835400 3236300 2556900 3463700 2315500 4040100 239830 4762600 1971400 2048900 2154700 2822900 3250400 2508700 3334200 2 2 2 2 2 2 2 2 2 2 2 657730000 354090000 303640000 1141 2972 1075 5942;5943;5944 7263;7264;7265;7266 7263 4 ALEAFETFKK Unmodified 1182.6285 0.62847478 1473 Q00796 SORD Sorbitol dehydrogenase yes yes 0 0 0 1 By MS/MS By matching 7.33 0.471 2 1 2 1 59.782 60.254 3 0.0010636 18279 20211116_3436_TMUAki_TMT10x_P_F8 83.045 60.999 12786000 19181000 0 22132000 22973000 26437000 14382000 15352000 16357000 14496000 16454000 11904000 17909000 1076500 22434000 21804000 26417000 15098000 16142000 16558000 14193000 15870000 2 2 0 2 2 2 2 2 2 2 2 12786000 19181000 0 22132000 22973000 26437000 14382000 15352000 16357000 14496000 16454000 11904000 17909000 1076500 22434000 21804000 26417000 15098000 16142000 16558000 14193000 15870000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1501500000 1151200000 350370000 1142 1473 1076 5945;5946;5947 7267;7268 7268 2 ALEAVFGK Unmodified 833.4647 0.46470391 969 P38159;P38159-2;P38159-3 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 6.71 1.03 1 2 2 2 4 3 61.578 61.81 2 0.0005229 20065 20211116_3435_TMUAki_TMT10x_P_F7 138.9 68.627 115390000 175520000 589190 193330000 153800000 167380000 125200000 131820000 156180000 143600000 149820000 107440000 163840000 10361000 195580000 146770000 171310000 129450000 136170000 157300000 139760000 144730000 7 7 4 7 7 7 7 7 7 7 7 49048000 71495000 228050 81236000 98973000 100820000 53544000 56508000 68473000 61645000 62593000 45670000 66749000 4945000 82479000 93769000 100500000 57149000 59844000 68798000 59994000 60563000 3 3 2 3 3 3 3 3 3 3 3 66338000 104020000 361140 112090000 54827000 66560000 71659000 75312000 87702000 81952000 87230000 61768000 97095000 5416000 113100000 52999000 70812000 72303000 76330000 88503000 79765000 84162000 4 4 2 4 4 4 4 4 4 4 4 6139500000 3303900000 2835600000 1143 969 1077 5948;5949;5950;5951;5952;5953;5954 7269;7270;7271;7272;7273;7274;7275;7276 7271 8 ALECFCQAASEVGKEEFLDR Unmodified 2358.062 0.062031269 1562 Q12769 NUP160 Nuclear pore complex protein Nup160 yes yes 0 0 0 1 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 75.518 75.509 3 1.2261E-12 25269 20211116_3442_TMUAki_TMT10x_S_F4 123.17 106.87 20500000 33649000 243800 30046000 23003000 29630000 22936000 16205000 13992000 17719000 23083000 19089000 31384000 1939200 30900000 22068000 29909000 22992000 17199000 14949000 17243000 21986000 5 5 4 5 5 5 5 5 5 5 5 13027000 20723000 138670 18643000 11945000 22051000 14449000 9997100 8924000 10876000 14449000 12131000 19329000 1194100 19217000 11525000 21983000 14354000 10799000 9516500 10586000 13768000 3 3 3 3 3 3 3 3 3 3 3 7472700 12926000 105130 11403000 11057000 7579600 8487100 6208400 5068300 6842300 8633600 6958400 12056000 745070 11683000 10543000 7926600 8637300 6400400 5432200 6656400 8218100 2 2 1 2 2 2 2 2 2 2 2 1434700000 896590000 538150000 1144 1562 1078 5955;5956;5957 7277;7278;7279;7280;7281 7280 5 ALEDAFLAIDAK Unmodified 1275.6711 0.67106787 183 O15355 PPM1G Protein phosphatase 1G yes yes 0 0 0 0 By MS/MS By MS/MS 2.75 1.39 2 2 1 2 1 4 4 78.752 78.723 2 2.2873E-16 25778 20211116_3428_TMUAki_TMT10x_P_F1 203.49 138.14 27276000 45642000 175600 41726000 31601000 45512000 32351000 28750000 28250000 29772000 34013000 25397000 42574000 2420600 42901000 30326000 45754000 32649000 30108000 29123000 29035000 32633000 6 6 4 6 6 6 6 6 6 6 6 18667000 30707000 83502 27465000 19652000 35230000 21401000 19500000 18623000 20242000 22593000 17381000 28640000 1574200 28364000 18888000 35058000 21531000 20642000 19208000 19739000 21672000 4 4 2 4 4 4 4 4 4 4 4 8609300 14935000 92102 14261000 11949000 10282000 10950000 9250300 9626800 9530100 11420000 8016800 13934000 846370 14537000 11437000 10696000 11118000 9465500 9915100 9296100 10961000 2 2 2 2 2 2 2 2 2 2 2 3685000000 1920300000 1764800000 1145 183 1079 5958;5959;5960;5961;5962;5963;5964;5965 7282;7283;7284;7285;7286;7287;7288 7282 7 ALEDITASIAMAVIQQK Oxidation (M) 1816.9604 0.96044996 1265 P57678 GEMIN4 Gem-associated protein 4 yes yes 0 0 1 0 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 81.867 81.876 3 1.1954E-15 29013 20211116_3446_TMUAki_TMT10x_S_F7 151.07 107.08 5353400 9259200 74765 7945700 6462000 7639300 7053200 6384200 5888800 7210200 8033600 4985100 8634900 523400 8194100 6215100 7773100 7087400 6579100 6117900 7007800 7683300 5 5 4 5 5 5 5 5 5 5 5 1350100 2052700 0 1860500 1340000 2506100 1521900 1488200 1176600 1803800 1941300 1257000 1914700 106150 1921200 1289100 2490400 1523500 1574000 1239200 1748600 1849000 1 1 0 1 1 1 1 1 1 1 1 4003400 7206500 74765 6085200 5122000 5133200 5531300 4895900 4712200 5406400 6092400 3728100 6720200 417250 6272900 4926000 5282800 5563900 5005100 4878700 5259200 5834300 4 4 4 4 4 4 4 4 4 4 4 1397200000 717060000 680180000 1146 1265 1080 5966;5967;5968;5969;5970;5971 7289;7290;7291;7292;7293 7291 1707 5 ALEDLAGFK Unmodified 962.5073 0.50729701 1039 P46013;P46013-2 MKI67 Antigen KI-67 yes no 0 0 0 0 By MS/MS 5 0 1 1 65.683 65.808 2 0.0062984 21106 20211116_3433_TMUAki_TMT10x_P_F5 70.816 38.031 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1147 1039 1081 5972 7294 7294 1 ALEDLVDFK Unmodified 1048.5441 0.54407645 1039 P46013;P46013-2 MKI67 Antigen KI-67 yes no 0 0 0 0 By MS/MS 3 0 1 1 75.617 75.431 2 0.00039265 27422 20211116_3441_TMUAki_TMT10x_S_F3 124.92 85.774 3424700 5434100 0 5570500 3506600 2995900 3401300 2964800 2745100 3022100 4048400 3188400 5071100 241750 5634700 3356800 3210200 3435300 3017700 2867600 2949200 3865000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3424700 5434100 0 5570500 3506600 2995900 3401300 2964800 2745100 3022100 4048400 3188400 5071100 241750 5634700 3356800 3210200 3435300 3017700 2867600 2949200 3865000 1 1 0 1 1 1 1 1 1 1 1 138880000 0 138880000 1148 1039 1082 5973 7295 7295 1 ALEEALEAKEEFER Unmodified 1662.8101 0.81008055 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 1 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 69.865 69.646 3 2.3302E-23 23956 20211116_3439_TMUAki_TMT10x_S_F1 183.01 156.89 96862000 153690000 840390 151870000 111210000 144620000 105080000 107230000 105070000 108330000 122630000 90189000 143410000 8328100 154960000 106490000 146940000 106910000 110940000 107510000 105760000 117760000 13 13 8 13 13 13 13 13 13 13 13 54589000 84022000 383980 83412000 63379000 103100000 61454000 57891000 59041000 60253000 65831000 50827000 78399000 4600200 85432000 60719000 102800000 62361000 61212000 60411000 58749000 63294000 6 6 3 6 6 6 6 6 6 6 6 42273000 69671000 456410 68462000 47834000 41517000 43628000 49339000 46028000 48078000 56802000 39361000 65006000 3727900 69525000 45769000 44133000 44548000 49732000 47103000 47007000 54461000 7 7 5 7 7 7 7 7 7 7 7 8079700000 4092500000 3987200000 1149 935 1083 5974;5975;5976;5977;5978;5979 7296;7297;7298;7299;7300;7301;7302;7303;7304;7305;7306;7307;7308 7302 13 ALEEELAGLK Unmodified 1071.5812 0.58119023 423 O95347;O95347-2 SMC2 Structural maintenance of chromosomes protein 2 yes no 0 0 0 0 By MS/MS 3 0 1 1 66.367 65.904 2 3.1927E-08 23662 20211116_3441_TMUAki_TMT10x_S_F3 163.32 82.023 3331600 5209500 56772 6091400 3288100 2804400 2764800 4517200 4816300 4370500 4896100 3102500 4864300 328510 6102800 3143100 3098200 2895300 4501900 4812800 4274500 4720600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3331600 5209500 56772 6091400 3288100 2804400 2764800 4517200 4816300 4370500 4896100 3102500 4864300 328510 6102800 3143100 3098200 2895300 4501900 4812800 4274500 4720600 1 1 1 1 1 1 1 1 1 1 1 239570000 0 239570000 1150 423 1084 5980 7309 7309 1 ALEEGLTPQEICDK Unmodified 1601.7607 0.76068752 1254 P56192;P56192-2 MARS Methionine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS 2 0 1 1 57.175 56.922 3 0.009212 18413 20211116_3429_TMUAki_TMT10x_P_F2 59.607 42.923 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1151 1254 1085 5981 7310 7310 1 ALEENNNFSK Unmodified 1164.5411 0.54111633 2389 Q93045;Q93045-2 STMN2 Stathmin-2 yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.943 1 1 3 1 1 5 38.33 38.378 2;3 6.7584E-19 10007 20211116_3431_TMUAki_TMT10x_P_F4 248.09 0 4973000 8364600 11929 7469900 6710400 6603100 6203300 4258900 4883600 4253200 6183500 4630000 7801700 385120 7670800 6418100 6727600 6277900 4448300 5072100 4154100 5924700 6 6 2 6 6 6 6 6 6 6 6 2276300 3696100 0 3093800 3740200 3819500 2916000 1998600 2270800 1925000 2753800 2119300 3446600 188750 3209600 3564200 3805300 2981000 2121700 2355500 1883100 2641600 1 1 0 1 1 1 1 1 1 1 1 2696800 4668600 11929 4376000 2970100 2783700 3287200 2260300 2612800 2328200 3429700 2510700 4355200 196370 4461100 2853900 2922300 3296900 2326600 2716600 2271000 3283200 5 5 2 5 5 5 5 5 5 5 5 443480000 190420000 253060000 1152 2389 1086 5982;5983;5984;5985;5986;5987 7311;7312;7313;7314;7315;7316 7311 6 ALEEQNELLSAELGGLR Unmodified 1840.9531 0.95305639 1080 P48681 NES Nestin yes yes 0 0 0 0 By MS/MS By MS/MS 2.18 0.936 3 4 3 1 6 5 74.518 74.425 2;3 2.9329E-58 25479 20211116_3429_TMUAki_TMT10x_P_F2 258.02 196.86 22313000 39178000 304230 34411000 32411000 33661000 26977000 23414000 22184000 23487000 28921000 20777000 36540000 2215700 35431000 30955000 34108000 27500000 24325000 23017000 22936000 27691000 10 10 6 10 10 10 10 10 10 10 10 10889000 17487000 38778 15839000 9749900 19344000 11964000 9364500 9552400 9503800 12210000 10139000 16311000 904970 16328000 9405500 19266000 11945000 10029000 9917800 9276100 11696000 4 4 3 4 4 4 4 4 4 4 4 11424000 21691000 265450 18572000 22661000 14317000 15013000 14050000 12632000 13983000 16712000 10638000 20229000 1310700 19103000 21549000 14841000 15554000 14296000 13099000 13659000 15995000 6 6 3 6 6 6 6 6 6 6 6 4833800000 2798200000 2035600000 1153 1080 1087 5988;5989;5990;5991;5992;5993;5994;5995;5996;5997;5998 7317;7318;7319;7320;7321;7322;7323;7324;7325;7326;7327;7328;7329 7320 13 ALEESESSQLISPPLAQAIR Unmodified 2138.1219 0.12191263 1006 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 68.612 68.688 3 2.1382E-09 22023 20211116_3431_TMUAki_TMT10x_P_F4 115.34 95.501 2135600 3554800 78183 3130200 2106500 3996800 2666300 2325800 2275500 2368500 2581300 1989100 3315400 249510 3236200 2038600 3980700 2663200 2450300 2342900 2311400 2480700 1 1 1 1 1 1 1 1 1 1 1 2135600 3554800 78183 3130200 2106500 3996800 2666300 2325800 2275500 2368500 2581300 1989100 3315400 249510 3236200 2038600 3980700 2663200 2450300 2342900 2311400 2480700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 348450000 348450000 0 1154 1006 1088 5999;6000 7330;7331 7330 2 ALEFAPACHR Unmodified 1170.5604 0.56041199 2590 Q99615;Q99615-2 DNAJC7 DnaJ homolog subfamily C member 7 yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 34.563 34.637 3 0.00050177 7848 20211116_3444_TMUAki_TMT10x_S_F5 91.087 66.193 738370 1148900 13192 1229500 707100 609510 683920 724670 731020 738230 961020 687590 1072400 73073 1239400 678220 661760 696400 731390 749790 720430 919940 2 2 2 2 2 2 2 2 2 2 2 127000 207100 3739.2 198310 169120 170980 139640 74871 72181 91127 140540 118280 193210 14604 202530 161640 173710 141090 81460 78810 88329 133460 1 1 1 1 1 1 1 1 1 1 1 611360 941820 9453.1 1031200 537980 438530 544290 649800 658840 647100 820480 569310 879150 58468 1036900 516580 488050 555310 649930 670980 632100 786480 1 1 1 1 1 1 1 1 1 1 1 55804000 3731400 52073000 1155 2590 1089 6001;6002;6003 7332;7333;7334 7334 3 ALEGTLSELAAETDLPVVFVK Unmodified 2201.1831 0.18311591 1871 Q16881;Q16881-3;Q16881-4 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 0 0 0 0 By matching By MS/MS 2 0 2 1 1 81.943 81.937 3 1.7313E-05 27279 20211116_3440_TMUAki_TMT10x_S_F2 78.794 62.488 693320 1131900 0 1175700 868710 783940 928700 663280 725020 788200 946980 645380 1056300 38997 1190400 833110 820080 932580 684200 754370 764650 906640 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 693320 1131900 0 1175700 868710 783940 928700 663280 725020 788200 946980 645380 1056300 38997 1190400 833110 820080 932580 684200 754370 764650 906640 1 1 0 1 1 1 1 1 1 1 1 254680000 61037000 193650000 1156 1871 1090 6004;6005 7335 7335 1 ALEHFTDLYDIK Unmodified 1463.7296 0.72964538 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS 5.25 0.829 1 1 2 4 64.763 64.83 3 1.5838E-05 19555 20211116_3434_TMUAki_TMT10x_P_F6 96.745 73.14 6721300 9681400 407650 11123000 7399500 12404000 8103500 7354100 6831900 8060200 8081900 6261200 9039100 946660 11265000 7137300 12443000 8143500 7753100 7050300 7842900 7757600 1 1 1 1 1 1 1 1 1 1 1 6721300 9681400 407650 11123000 7399500 12404000 8103500 7354100 6831900 8060200 8081900 6261200 9039100 946660 11265000 7137300 12443000 8143500 7753100 7050300 7842900 7757600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1027200000 1027200000 0 1157 1471 1091 6006;6007;6008;6009 7336;7337;7338 7338 3 ALEHFTDLYDIKR Unmodified 1619.8308 0.83075641 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 1 By MS/MS By MS/MS 6.67 0.943 1 3 3 2 4 5 56.236 56.455 3;4 7.9589E-20 16720 20211116_3436_TMUAki_TMT10x_P_F8 195.72 165.18 51380000 84611000 385970 96588000 70726000 100410000 55782000 71226000 70698000 72681000 69538000 47842000 78996000 4827000 97747000 67459000 101400000 57825000 73934000 71229000 70925000 67117000 10 10 6 10 10 10 10 10 10 10 10 27980000 45054000 353180 51457000 49251000 76964000 37470000 37312000 37671000 38053000 37210000 26055000 42064000 2925900 52424000 46948000 75941000 38630000 39960000 38298000 37134000 35910000 5 5 3 5 5 5 5 5 5 5 5 23400000 39557000 32786 45131000 21475000 23444000 18312000 33914000 33027000 34628000 32328000 21788000 36932000 1901100 45323000 20511000 25457000 19195000 33974000 32931000 33791000 31207000 5 5 3 5 5 5 5 5 5 5 5 7280800000 3978700000 3302000000 1158 1471 1092 6010;6011;6012;6013;6014;6015;6016;6017;6018 7339;7340;7341;7342;7343;7344;7345;7346;7347;7348;7349 7343 11 ALEHSALAINHKLEIK Unmodified 1786.0101 0.010117761 709 P17812;P17812-2 CTPS1 CTP synthase 1 yes no 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 46.637 47.165 5 3.5875E-47 14158 20211116_3435_TMUAki_TMT10x_P_F7 252.36 214.76 3541200 5575600 85729 6402500 5916300 5279400 3862800 5326100 4908400 4478200 4931200 3297800 5205700 406750 6456400 5626400 5448600 4057900 5387500 4948500 4408600 4756300 2 2 2 2 2 2 2 2 2 2 2 1719800 2627000 37467 2939000 3868900 3840000 2277000 2478600 2304700 2054700 2282000 1601600 2452500 207600 2989700 3671900 3825800 2393800 2576100 2342700 2024200 2202100 1 1 1 1 1 1 1 1 1 1 1 1821300 2948500 48262 3463500 2047400 1439400 1585800 2847500 2603700 2423500 2649200 1696200 2753200 199150 3466700 1954500 1622900 1664200 2811400 2605900 2384300 2554200 1 1 1 1 1 1 1 1 1 1 1 1045500000 650070000 395430000 1159 709 1093 6019;6020 7350;7351 7350 2 ALEIIPR Unmodified 810.49634 0.49633839 2609 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 By MS/MS By MS/MS 4.5 1.12 2 2 2 2 4 4 49.47 49.531 2 0.005007 14481 20211116_3442_TMUAki_TMT10x_S_F4 110.61 47.633 38244000 59039000 62439 64451000 55657000 56535000 39578000 48259000 47459000 44432000 51628000 35605000 55110000 3017900 65250000 52936000 57896000 41230000 49370000 48084000 43552000 49675000 9 9 2 9 9 9 9 9 9 9 9 19150000 28590000 48537 31155000 36585000 38955000 21877000 22964000 23228000 21361000 25317000 17829000 26688000 1554900 31719000 34692000 38844000 23001000 24107000 23645000 20928000 24358000 4 4 1 4 4 4 4 4 4 4 4 19093000 30449000 13902 33296000 19071000 17580000 17701000 25295000 24231000 23071000 26311000 17777000 28423000 1463000 33531000 18244000 19052000 18229000 25263000 24439000 22624000 25317000 5 5 1 5 5 5 5 5 5 5 5 7142200000 4301600000 2840700000 1160 2609 1094 6021;6022;6023;6024;6025;6026;6027;6028 7352;7353;7354;7355;7356;7357;7358;7359;7360 7357 9 ALELDHK Unmodified 824.43922 0.43921744 2590 Q99615;Q99615-2 DNAJC7 DnaJ homolog subfamily C member 7 yes no 0 0 0 0 By MS/MS 3 0 1 1 35.553 35.313 3 0.0020069 11159 20211116_3441_TMUAki_TMT10x_S_F3 108.7 24.599 427260 745790 7924.9 681250 470200 452720 503190 424790 463130 425790 570210 397880 695660 43410 696130 452160 474670 507440 433330 476710 415800 546750 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 427260 745790 7924.9 681250 470200 452720 503190 424790 463130 425790 570210 397880 695660 43410 696130 452160 474670 507440 433330 476710 415800 546750 1 1 1 1 1 1 1 1 1 1 1 20367000 0 20367000 1161 2590 1095 6029 7361 7361 1 ALELDPDNETYK Unmodified 1406.6565 0.65654002 242 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha yes yes 0 0 0 0 By MS/MS 3 0 1 1 55.307 55.111 3 0.018794 18143 20211116_3430_TMUAki_TMT10x_P_F3 58.172 36.921 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1162 242 1096 6030 7362 7362 1 ALELDPNLYR Unmodified 1202.6295 0.62953741 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 no no 0 0 0 0 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 60.163 60.048 2 6.0421E-11 18477 20211116_3431_TMUAki_TMT10x_P_F4 207.29 156.58 36822000 60130000 211290 67435000 49808000 56513000 39789000 48685000 46787000 44439000 49563000 34283000 56135000 2958000 68115000 47488000 58070000 41100000 49767000 47390000 43576000 47726000 7 7 3 7 7 7 7 7 7 7 7 17180000 26285000 117480 29760000 28482000 38960000 22437000 21352000 21093000 20721000 22355000 15995000 24540000 1439000 30252000 27149000 38727000 23033000 22579000 21562000 20263000 21526000 3 3 2 3 3 3 3 3 3 3 3 19642000 33845000 93807 37675000 21326000 17554000 17351000 27332000 25694000 23718000 27208000 18288000 31596000 1519100 37863000 20339000 19343000 18066000 27188000 25828000 23313000 26200000 4 4 1 4 4 4 4 4 4 4 4 4126200000 1926000000 2200200000 1163 935 1097 6031;6032;6033;6034;6035 7363;7364;7365;7366;7367;7368;7369 7365 7 ALELDSNLYR Unmodified 1192.6088 0.60880197 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 54.428 54.515 2 5.8898E-12 16195 20211116_3431_TMUAki_TMT10x_P_F4 217.64 187.83 5114300 8768700 0 10249000 7231900 7956100 5280800 6980300 6559100 6223100 7198300 4761800 8187700 436560 10317000 6884100 8224600 5498100 7123700 6639500 6109000 6924200 2 2 0 2 2 2 2 2 2 2 2 2198700 3618100 0 4391700 4305600 5380000 3076600 2954100 2894200 2719900 2934800 2047100 3378900 200740 4440400 4096800 5365300 3179300 3119000 2953800 2666000 2829800 1 1 0 1 1 1 1 1 1 1 1 2915600 5150700 0 5857800 2926300 2576100 2204200 4026100 3664900 3503200 4263600 2714600 4808800 235820 5876900 2787300 2859400 2318800 4004700 3685800 3443000 4094400 1 1 0 1 1 1 1 1 1 1 1 954060000 497820000 456240000 1164 934 1098 6036;6037;6038 7370;7371;7372 7371 3 ALELENDR Unmodified 958.47197 0.47197413 1505 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 0 By MS/MS 2 0 1 1 35.937 36.036 2 0.067603 8547 20211116_3440_TMUAki_TMT10x_S_F2 55.112 22.271 192470 328190 1963.7 350370 211270 186140 226020 193230 200170 205360 285280 179230 306320 18051 353410 203070 199920 227690 196470 207790 200060 272560 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 192470 328190 1963.7 350370 211270 186140 226020 193230 200170 205360 285280 179230 306320 18051 353410 203070 199920 227690 196470 207790 200060 272560 1 1 1 1 1 1 1 1 1 1 1 5849300 0 5849300 1165 1505 1099 6039 7373 7373 1 ALELENDRLLLK Unmodified 1425.8191 0.81912909 1505 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 60.099 60.162 3 1.7116E-15 18731 20211116_3433_TMUAki_TMT10x_P_F5 191.48 159.82 25455000 39649000 472010 44827000 35657000 42463000 28235000 39233000 37617000 33124000 36222000 23704000 37016000 2596900 45330000 34026000 43332000 29318000 39870000 37809000 32603000 34985000 4 4 3 4 4 4 4 4 4 4 4 14171000 21754000 444320 24473000 23251000 32299000 18942000 21963000 20962000 18070000 19609000 13198000 20309000 1716100 24891000 22213000 32189000 19502000 22735000 21189000 17808000 18958000 2 2 2 2 2 2 2 2 2 2 2 11284000 17895000 27692 20355000 12406000 10164000 9292600 17271000 16656000 15055000 16612000 10506000 16707000 880770 20439000 11813000 11143000 9816700 17134000 16621000 14795000 16027000 2 2 1 2 2 2 2 2 2 2 2 4478300000 2383000000 2095300000 1166 1505 1100 6040;6041;6042;6043;6044;6045 7374;7375;7376;7377;7378 7375 5 ALELNMLSLK Unmodified 1130.6369 0.63693097 3335 Q9Y617 PSAT1 Phosphoserine aminotransferase yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 75.691 75.645 2 1.5111E-08 24053 20211116_3447_TMUAki_TMT10x_S_F8 172.69 106.62 7202200 13359000 179650 11572000 13546000 16264000 13328000 7672300 6405200 8185100 11114000 6707300 12458000 853390 12002000 12994000 16086000 13317000 8249600 6986200 7972800 10575000 2 2 2 2 2 2 2 2 2 2 2 4427000 8551200 155490 7510500 9536600 13455000 10015000 4833000 3896400 5426100 7096700 4123100 7975300 583500 7824300 9165600 13147000 9944100 5366800 4345200 5275000 6746900 1 1 1 1 1 1 1 1 1 1 1 2775100 4807600 24161 4061700 4009700 2808900 3313500 2839300 2508800 2758900 4017000 2584100 4483200 269890 4177600 3828600 2939500 3372500 2882900 2641000 2697800 3828300 1 1 1 1 1 1 1 1 1 1 1 1441000000 905820000 535180000 1167 3335 1101 6046;6047;6048 7379;7380;7381 7381 3 ALELSGTAVPPDLEK Unmodified 1538.8192 0.81918867 2049 Q7L014 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 0 0 0 0 By MS/MS 4 0 1 1 64.397 64.497 3 0.0033893 20342 20211116_3431_TMUAki_TMT10x_P_F4 60.657 37.282 4194500 6411900 57650 7163800 5721000 7636000 5435000 3794400 3481700 4018900 4819200 3905900 5985800 422860 7262200 5481800 7663600 5467500 4058500 3675000 3915800 4607500 1 1 1 1 1 1 1 1 1 1 1 4194500 6411900 57650 7163800 5721000 7636000 5435000 3794400 3481700 4018900 4819200 3905900 5985800 422860 7262200 5481800 7663600 5467500 4058500 3675000 3915800 4607500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 368160000 368160000 0 1168 2049 1102 6049 7382 7382 1 ALELTGLK Unmodified 843.50657 0.50656873 729 P19338 NCL Nucleolin yes yes 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 57.302 57.587 2 0.00041632 16923 20211116_3445_TMUAki_TMT10x_S_F6 143.12 51.494 86452000 134050000 398400 143960000 163870000 146800000 99401000 115880000 124550000 106520000 128450000 80494000 125120000 8047200 146200000 155500000 148680000 104980000 119100000 125750000 104420000 123790000 6 6 4 6 6 6 6 6 6 6 6 43588000 67137000 184610 72352000 120150000 107980000 60138000 58569000 62322000 52796000 64728000 40582000 62665000 4342600 73976000 113670000 106690000 64206000 61870000 63392000 51801000 62367000 3 3 2 3 3 3 3 3 3 3 3 42864000 66910000 213790 71603000 43728000 38821000 39262000 57308000 62229000 53724000 63718000 39912000 62452000 3704500 72225000 41825000 41986000 40770000 57227000 62355000 52617000 61420000 3 3 2 3 3 3 3 3 3 3 3 5860000000 3381500000 2478400000 1169 729 1103 6050;6051;6052;6053;6054;6055 7383;7384;7385;7386;7387;7388 7387 6 ALENDPDCR Unmodified 1088.4557 0.45567214 658;657 P13796;P13797;P13797-3;P13797-2 LCP1;PLS3 Plastin-2;Plastin-3 no no 0 0 0 0 By MS/MS 1 0 1 1 29.364 29.445 2 0.0063842 7748 20211116_3439_TMUAki_TMT10x_S_F1 76.221 52.665 67274 120750 0 129020 87568 74249 81733 61401 66607 58515 99962 62636 112710 5485.7 130220 83793 78729 82742 62990 69607 57268 95397 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 67274 120750 0 129020 87568 74249 81733 61401 66607 58515 99962 62636 112710 5485.7 130220 83793 78729 82742 62990 69607 57268 95397 1 1 0 1 1 1 1 1 1 1 1 2385300 0 2385300 1170 657;658 1104 6056 7389 7389 1 ALEPSFLPVAELHGLR Unmodified 1747.9621 0.96210494 1725 Q14687;Q14687-2;Q14687-3 GSE1 Genetic suppressor element 1 yes no 0 0 0 0 By MS/MS 7 0 1 1 69.103 69.412 3 8.6135E-11 23781 20211116_3446_TMUAki_TMT10x_S_F7 130.72 101.74 2118400 3396000 17304 2943400 2675100 2537500 2223900 2928200 2458400 2591000 2594400 1972500 3167200 199550 3028700 2554700 2618800 2286700 2947400 2495600 2544400 2498500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2118400 3396000 17304 2943400 2675100 2537500 2223900 2928200 2458400 2591000 2594400 1972500 3167200 199550 3028700 2554700 2618800 2286700 2947400 2495600 2544400 2498500 1 1 1 1 1 1 1 1 1 1 1 721170000 0 721170000 1171 1725 1105 6057 7390 7390 1 ALEQFATVVEAK Unmodified 1304.6976 0.69761697 1115 P49748;P49748-2;P49748-3 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS 6 0 1 1 71.308 71.253 3 0.061204 22181 20211116_3434_TMUAki_TMT10x_P_F6 43.337 19.961 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1172 1115 1106 6058 7391 7391 1 ALEQKPDDAQYYCQR Unmodified 1883.8472 0.84721111 3256 Q9Y2Z0;Q9Y2Z0-2 SUGT1 Suppressor of G2 allele of SKP1 homolog yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 38.433 38.498 3 7.1195E-34 9782 20211116_3431_TMUAki_TMT10x_P_F4 232.28 212.89 2710900 3853200 46189 7802000 18959000 9281300 5040900 4671300 6953600 2526500 5815200 2524300 3610200 481590 7702600 17831000 9260400 5900100 4917900 6950000 2555900 5644900 4 4 3 4 4 4 4 4 4 4 4 2451200 3463200 45559 7004500 18726000 9121500 4814200 4197000 6254100 2280500 5229700 2282500 3244800 459850 6927200 17608000 9051100 5655200 4458400 6263100 2306200 5076600 3 3 2 3 3 3 3 3 3 3 3 259680 389950 629.94 797580 232640 159840 226700 474290 699560 246090 585470 241790 365390 21737 775330 222950 209240 244900 459530 686940 249740 568320 1 1 1 1 1 1 1 1 1 1 1 623630000 482460000 141170000 1173 3256 1107 6059;6060;6061 7392;7393;7394;7395 7392 4 ALEQLNGFELAGRPMK Oxidation (M) 1788.9193 0.91925384 1711 Q14498;Q14498-2;Q14498-3 RBM39 RNA-binding protein 39 yes no 0 0 1 1 By MS/MS By MS/MS 7 0 2 1 1 56.679 57.308 3 4.9872E-05 18806 20211116_3446_TMUAki_TMT10x_S_F7 86.378 65.915 13586000 22857000 0 21877000 15233000 22629000 13283000 27838000 30826000 25402000 19944000 12648000 21325000 855470 22399000 14538000 23123000 14118000 27968000 30207000 24910000 19576000 2 2 0 2 2 2 2 2 2 2 2 4845400 7490200 0 7644100 7937000 14452000 6707200 10660000 11487000 9499500 7311300 4511200 6989800 402360 7889200 7576700 14218000 7015700 10995000 11329000 9325500 7182200 1 1 0 1 1 1 1 1 1 1 1 8741000 15367000 0 14233000 7296400 8176300 6575600 17179000 19339000 15903000 12633000 8136700 14335000 453110 14509000 6961600 8905300 7102700 16974000 18878000 15584000 12394000 1 1 0 1 1 1 1 1 1 1 1 2473600000 1275000000 1198600000 1174 1711 1108 6062;6063 7396;7397 7397 2300 2 ALEQLNGFELAGRPMK Unmodified 1772.9243 0.92433922 1711 Q14498;Q14498-2;Q14498-3 RBM39 RNA-binding protein 39 yes no 0 0 0 1 By MS/MS 8 0 1 1 61.753 61.758 3 1.4302E-10 18367 20211116_3447_TMUAki_TMT10x_S_F8 129.01 111.93 4719100 8162300 16189 8172500 5182500 4619100 4785300 5432500 4632400 5264800 6380500 4394000 7616300 412820 8283400 4960200 4943100 4870000 5477300 4781400 5148800 6100900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4719100 8162300 16189 8172500 5182500 4619100 4785300 5432500 4632400 5264800 6380500 4394000 7616300 412820 8283400 4960200 4943100 4870000 5477300 4781400 5148800 6100900 1 1 1 1 1 1 1 1 1 1 1 570280000 0 570280000 1175 1711 1108 6064 7398 7398 1 ALEQQVEEMR Oxidation (M) 1247.5816 0.58160094 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 34.174 34.168 2 0.0039944 7638 20211116_3428_TMUAki_TMT10x_P_F1 81.099 61.842 619690 900120 1826.9 1231400 1194800 986330 685050 615240 646440 609690 881280 576940 841140 51829 1229200 1132300 1011600 720330 644090 667660 595690 842870 3 3 1 3 3 3 3 3 3 3 3 400810 564570 1826.9 783830 1031300 816980 493300 382450 407900 384180 559880 373180 527620 40916 784640 975290 820470 525860 410830 424090 375140 535390 2 2 1 2 2 2 2 2 2 2 2 218890 335550 0 447560 163470 169350 191750 232790 238540 225510 321400 203760 313520 10913 444520 157030 191110 194470 233260 243570 220550 307470 1 1 0 1 1 1 1 1 1 1 1 26717000 14447000 12270000 1176 935 1109 6065;6066 7399;7400;7401 7399 1185 3 ALESPERPFLAILGGAK Unmodified 1767.9883 0.98831969 473 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 1 By MS/MS By MS/MS 3.64 2.47 8 11 9 1 1 3 3 6 17 25 56 55.938 2;3;4 2.2987E-58 23284 20211116_3428_TMUAki_TMT10x_P_F1 283.21 255.01 315280000 502180000 3097500 486100000 366070000 448520000 383740000 323280000 299760000 341450000 384020000 293570000 468530000 28628000 496470000 351560000 456430000 385720000 335550000 311620000 332730000 367840000 57 57 37 57 57 57 57 57 57 57 57 147890000 229460000 1875200 220550000 145910000 269310000 171400000 151320000 143450000 160830000 177550000 137710000 214080000 13490000 226350000 140620000 268690000 171660000 160090000 148370000 156680000 170220000 24 24 15 24 24 24 24 24 24 24 24 167390000 272720000 1222300 265550000 220160000 179220000 212340000 171950000 156310000 180620000 206470000 155860000 254450000 15138000 270120000 210940000 187740000 214060000 175460000 163250000 176040000 197620000 33 33 22 33 33 33 33 33 33 33 33 120990000000 68416000000 52574000000 1177 473 1110 6067;6068;6069;6070;6071;6072;6073;6074;6075;6076;6077;6078;6079;6080;6081;6082;6083;6084;6085;6086;6087;6088;6089;6090;6091;6092;6093;6094;6095;6096;6097;6098;6099;6100;6101;6102;6103;6104;6105;6106;6107;6108 7402;7403;7404;7405;7406;7407;7408;7409;7410;7411;7412;7413;7414;7415;7416;7417;7418;7419;7420;7421;7422;7423;7424;7425;7426;7427;7428;7429;7430;7431;7432;7433;7434;7435;7436;7437;7438;7439;7440;7441;7442;7443;7444;7445;7446;7447;7448;7449;7450;7451;7452;7453;7454;7455;7456;7457;7458;7459;7460;7461;7462;7463;7464;7465;7466 7407 65 ALESSIAPIVIFASNR Unmodified 1686.9305 0.93047046 3225 Q9Y265;Q9Y265-2 RUVBL1 RuvB-like 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.89 2.51 3 4 1 1 4 5 78.769 78.756 2;3 5.2626E-80 27227 20211116_3429_TMUAki_TMT10x_P_F2 318.32 241.64 30715000 48055000 520790 46079000 30430000 42249000 35717000 25244000 22890000 27159000 35239000 28602000 44833000 2959300 47091000 29337000 42895000 35556000 26582000 24286000 26446000 33611000 6 6 4 6 6 6 6 6 6 6 6 16074000 23821000 222660 23055000 12785000 24829000 16843000 12264000 11064000 13478000 17998000 14968000 22225000 1489900 23600000 12374000 24903000 16693000 13140000 11754000 13114000 17147000 3 3 2 3 3 3 3 3 3 3 3 14641000 24234000 298140 23025000 17645000 17420000 18875000 12980000 11827000 13681000 17241000 13634000 22608000 1469400 23491000 16963000 17992000 18863000 13442000 12532000 13332000 16464000 3 3 2 3 3 3 3 3 3 3 3 7582400000 3876000000 3706300000 1178 3225 1111 6109;6110;6111;6112;6113;6114;6115;6116;6117 7467;7468;7469;7470;7471;7472;7473;7474 7469 8 ALETLTGALFQRPPLIAAVK Unmodified 2108.2358 0.2357606 294 O60832;O60832-2 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 0 0 0 1 By MS/MS By MS/MS 6 0 4 2 2 79.059 79.047 3;4 2.8959E-71 25710 20211116_3445_TMUAki_TMT10x_S_F6 278.74 250.53 28353000 46410000 419630 45312000 29577000 43533000 36107000 28983000 24836000 26351000 34115000 26400000 43302000 2531900 46277000 28534000 44131000 35935000 30124000 26089000 25844000 32623000 4 4 3 4 4 4 4 4 4 4 4 16040000 25762000 293240 25241000 14812000 31106000 19912000 17252000 14754000 14940000 18898000 14935000 24037000 1358900 25875000 14334000 31015000 19772000 18170000 15382000 14686000 18102000 2 2 1 2 2 2 2 2 2 2 2 12313000 20648000 126390 20071000 14765000 12427000 16195000 11732000 10082000 11411000 15217000 11465000 19265000 1172900 20402000 14201000 13116000 16163000 11954000 10706000 11158000 14521000 2 2 2 2 2 2 2 2 2 2 2 5528500000 2262600000 3265900000 1179 294 1112 6118;6119;6120;6121 7475;7476;7477;7478 7477 4 ALETLTGALFQRPPLIAAVKR Unmodified 2264.3369 0.33687163 294 O60832;O60832-2 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 0 0 0 2 By matching By MS/MS 8 0 2 1 1 77.237 77.201 4 1.6473E-75 24684 20211116_3447_TMUAki_TMT10x_S_F8 257.83 215.92 3283000 5744800 0 4874400 5199800 3495100 3936300 3685100 2943400 3298200 3941900 3056200 5357300 227710 5013600 4949400 3649900 4028100 3725600 3073300 3237100 3771700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3283000 5744800 0 4874400 5199800 3495100 3936300 3685100 2943400 3298200 3941900 3056200 5357300 227710 5013600 4949400 3649900 4028100 3725600 3073300 3237100 3771700 1 1 0 1 1 1 1 1 1 1 1 2071700000 680510000 1391200000 1180 294 1113 6122;6123 7479 7479 1 ALEVAEYLTPVLK Unmodified 1444.8177 0.81773211 2944 Q9NT62;Q9NT62-2 ATG3 Ubiquitin-like-conjugating enzyme ATG3 yes no 0 0 0 0 By matching By MS/MS 7 0 2 1 1 79.097 79.146 2 0.00058009 27907 20211116_3446_TMUAki_TMT10x_S_F7 82.261 47.874 5021800 8015500 389790 8820000 6364600 5318700 6750800 4013300 4239700 4586600 5942900 4678700 7482300 798420 8888700 6136000 5605000 6749700 4163400 4483500 4455900 5680100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5021800 8015500 389790 8820000 6364600 5318700 6750800 4013300 4239700 4586600 5942900 4678700 7482300 798420 8888700 6136000 5605000 6749700 4163400 4483500 4455900 5680100 1 1 1 1 1 1 1 1 1 1 1 1070700000 279460000 791200000 1181 2944 1114 6124;6125 7480 7480 1 ALEVIKPAHILQEKEEQHQLAVTAYLK Unmodified 3098.7128 0.71282011 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 2 By MS/MS By MS/MS 4.5 3.5 1 1 1 1 65.566 65.525 6 8.4194E-18 20341 20211116_3436_TMUAki_TMT10x_P_F8 132.77 126.74 12806000 23393000 9136.5 18870000 17076000 29524000 19103000 18907000 16475000 18486000 17861000 11924000 21811000 1112400 19730000 16424000 29182000 19189000 19746000 16924000 18072000 17187000 3 3 1 3 3 3 3 3 3 3 3 8619500 15474000 0 12895000 11631000 23637000 13758000 13018000 11172000 12414000 11760000 8025400 14429000 739170 13498000 11205000 23178000 13764000 13753000 11500000 12149000 11327000 2 2 0 2 2 2 2 2 2 2 2 4187000 7919600 9136.5 5975100 5444500 5887700 5344500 5889100 5302800 6072700 6100300 3898600 7382600 373260 6231600 5218500 6003400 5425100 5993100 5424800 5923400 5860100 1 1 1 1 1 1 1 1 1 1 1 1625300000 1101400000 523880000 1182 1684 1115 6126;6127 7481;7482;7483 7481 3 ALEYTIYNQELNETR Unmodified 1855.8952 0.89520716 3219 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 3 1 1 3 2 3 3 60.815 60.566 2;3 2.4433E-43 21464 20211116_3441_TMUAki_TMT10x_S_F3 260.81 228.97 13725000 22237000 1182600 23733000 17129000 27306000 16817000 18874000 18292000 18455000 18965000 12788000 20755000 2284700 24160000 16488000 27408000 17120000 19603000 18568000 18041000 18274000 6 6 5 6 6 6 6 6 6 6 6 11246000 17776000 1144000 19946000 14300000 24587000 14493000 15285000 14892000 15068000 15452000 10480000 16595000 2041400 20264000 13785000 24552000 14703000 16003000 15152000 14725000 14888000 4 4 4 4 4 4 4 4 4 4 4 2478700 4460700 38558 3787500 2829600 2719700 2323200 3589400 3399900 3387000 3513600 2308200 4159800 243350 3895500 2702600 2856000 2416300 3599500 3415700 3316300 3385900 2 2 1 2 2 2 2 2 2 2 2 1825400000 896440000 928990000 1183 3219 1116 6128;6129;6130;6131;6132;6133 7484;7485;7486;7487;7488;7489;7490;7491 7491 8 ALFAGDIEEMEERR Oxidation (M) 1680.7777 0.77773456 2622 Q9BQ52;Q9BQ52-4;Q9BQ52-3 ELAC2 Zinc phosphodiesterase ELAC protein 2 yes no 0 0 1 1 By MS/MS By matching 1.5 0.5 1 1 1 1 45.914 45.899 3 0.00055109 12345 20211116_3428_TMUAki_TMT10x_P_F1 77.185 65.208 3082700 5272700 0 5350700 6225000 7887900 4628400 5017500 4797500 4295400 4820200 2870000 4920300 257150 5491100 5925900 7814600 4783500 5224700 4874000 4224900 4649200 2 2 0 2 2 2 2 2 2 2 2 3082700 5272700 0 5350700 6225000 7887900 4628400 5017500 4797500 4295400 4820200 2870000 4920300 257150 5491100 5925900 7814600 4783500 5224700 4874000 4224900 4649200 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 306490000 207810000 98674000 1184 2622 1117 6134;6135 7492;7493 7492 2870 2 ALFAVPK Unmodified 744.45341 0.45341094 246 O43809 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 56.389 56.235 2 0.0026578 16857 20211116_3440_TMUAki_TMT10x_S_F2 123.34 86.749 45108000 73667000 332970 71640000 65672000 65521000 45902000 56375000 56847000 50756000 59504000 41997000 68732000 3591300 73136000 62444000 66921000 47933000 57612000 57448000 49802000 57319000 4 4 2 4 4 4 4 4 4 4 4 21045000 33335000 165350 30408000 40275000 43430000 24586000 25336000 27088000 23136000 27020000 19591000 31094000 1533100 31422000 38192000 43034000 25837000 26607000 27446000 22686000 26067000 2 2 1 2 2 2 2 2 2 2 2 24063000 40332000 167610 41232000 25397000 22091000 21316000 31040000 29759000 27620000 32484000 22405000 37638000 2058200 41714000 24252000 23887000 22096000 31005000 30002000 27116000 31252000 2 2 1 2 2 2 2 2 2 2 2 2135500000 1322200000 813320000 1185 246 1118 6136;6137;6138 7494;7495;7496;7497 7497 4 ALFEEVPELLTEAEK Unmodified 1716.8822 0.88218286 892 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 By MS/MS 1 0 1 1 80.424 80.387 3 7.9767E-07 28373 20211116_3439_TMUAki_TMT10x_S_F1 99.991 72.655 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1186 892 1119 6139 7498 7498 1 ALFEEVPELLTEAEKK Unmodified 1844.9771 0.97714588 892 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 1 By MS/MS By MS/MS 3 1.71 5 4 7 2 1 2 1 7 15 69.341 69.3 3;4 1.4771E-21 26243 20211116_3431_TMUAki_TMT10x_P_F4 174.87 157.59 187650000 299410000 1172300 282810000 213950000 257380000 231110000 158490000 164330000 185740000 222710000 174730000 279320000 16637000 289310000 205620000 261550000 231460000 166950000 172170000 180280000 213040000 26 26 18 26 26 26 26 26 26 26 26 87396000 134850000 421470 126990000 80905000 146280000 99263000 71139000 77525000 85484000 101510000 81376000 125800000 7399500 130390000 78053000 146140000 99054000 76550000 80671000 82897000 97182000 8 8 6 8 8 8 8 8 8 8 8 100260000 164560000 750790 155820000 133040000 111100000 131840000 87355000 86805000 100260000 121200000 93351000 153520000 9237800 158910000 127570000 115410000 132400000 90401000 91500000 97385000 115850000 18 18 12 18 18 18 18 18 18 18 18 31667000000 13392000000 18275000000 1187 892 1120 6140;6141;6142;6143;6144;6145;6146;6147;6148;6149;6150;6151;6152;6153;6154;6155;6156;6157;6158;6159;6160;6161 7499;7500;7501;7502;7503;7504;7505;7506;7507;7508;7509;7510;7511;7512;7513;7514;7515;7516;7517;7518;7519;7520;7521;7522;7523;7524;7525;7526 7506 28 ALFIVPR Unmodified 814.50651 0.50650915 2851 Q9HAU5 UPF2 Regulator of nonsense transcripts 2 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 57.354 57.037 2 0.010941 20044 20211116_3441_TMUAki_TMT10x_S_F3 97.64 23.043 3718200 5709500 36118 6452600 4539300 5475300 4232900 4954500 4739200 4939500 5174000 3462200 5330400 345810 6515600 4346500 5626400 4325300 5063200 4814600 4824800 4977700 2 2 1 2 2 2 2 2 2 2 2 1875900 2655500 0 3079800 2513400 3561400 2305000 2341800 2206300 2218600 2368400 1746600 2479500 156830 3119100 2404200 3571000 2345900 2438800 2254600 2171900 2279700 1 1 0 1 1 1 1 1 1 1 1 1842400 3054000 36118 3372800 2026000 1913800 1927900 2612700 2532900 2720900 2805700 1715700 2850900 188980 3396500 1942300 2055400 1979400 2624400 2560000 2652900 2698100 1 1 1 1 1 1 1 1 1 1 1 357530000 142660000 214860000 1188 2851 1121 6162;6163 7527;7528 7528 2 ALFNHIDK Unmodified 956.50797 0.50796571 2818 Q9H6T3;Q9H6T3-3;Q9H6T3-2 RPAP3 RNA polymerase II-associated protein 3 yes no 0 0 0 0 By MS/MS 7 0 1 1 41.525 42.129 3 0.0010856 12598 20211116_3446_TMUAki_TMT10x_S_F7 99.802 50.384 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1189 2818 1122 6164 7529 7529 1 ALFPGDSEIDQLFR Unmodified 1606.7991 0.79912193 797 P24941;P24941-2;Q00526 CDK2;CDK3 Cyclin-dependent kinase 2;Cyclin-dependent kinase 3 yes no 0 0 0 0 By MS/MS By MS/MS 4 1.31 1 2 1 2 1 3 4 79.31 79.276 2 3.8254E-33 26796 20211116_3442_TMUAki_TMT10x_S_F4 230.95 184.06 8857200 15820000 0 11138000 12798000 21984000 15626000 24307000 24631000 24801000 17372000 8245800 14745000 648650 11856000 12333000 21779000 15981000 24612000 24406000 24202000 16983000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8857200 15820000 0 11138000 12798000 21984000 15626000 24307000 24631000 24801000 17372000 8245800 14745000 648650 11856000 12333000 21779000 15981000 24612000 24406000 24202000 16983000 2 2 0 2 2 2 2 2 2 2 2 2841800000 1016900000 1824900000 1190 797 1123 6165;6166;6167;6168;6169;6170;6171 7530;7531;7532 7531 3 ALGAEIVR Unmodified 827.4865 0.48650199 598 P35520;P0DN79;P35520-2 CBS Cystathionine beta-synthase yes no 0 0 0 0 By MS/MS By MS/MS 3.88 1.05 1 2 2 3 4 4 39.081 39.102 2 0.0007405 10190 20211116_3442_TMUAki_TMT10x_S_F4 134.85 82.448 7463800 11285000 839230 12340000 9076000 10644000 6987100 7231700 7013200 7100100 9002400 6955500 10534000 1388900 12489000 8698600 10871000 7197300 7521000 7204200 6939700 8622700 4 4 2 4 4 4 4 4 4 4 4 5625800 8488500 825160 9445700 7169200 8991800 5085500 5357500 5112600 5422600 6679300 5244100 7924200 1226600 9561800 6869800 9106500 5268300 5632500 5255600 5293300 6394700 2 2 1 2 2 2 2 2 2 2 2 1838000 2796700 14065 2894400 1906800 1652200 1901600 1874200 1900700 1677500 2323100 1711400 2610000 162300 2927300 1828800 1764700 1929100 1888400 1948600 1646400 2227900 2 2 1 2 2 2 2 2 2 2 2 1172000000 693850000 478130000 1191 598 1124 6172;6173;6174;6175;6176;6177;6178;6179 7533;7534;7535;7536;7537;7538;7539 7538 7 ALGDAFK Unmodified 720.38064 0.38063993 2216 Q8N9Z2;Q8N9Z2-2 CCDC71L Coiled-coil domain-containing protein 71L yes no 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 42.975 43.09 2 0.099463 11886 20211116_3433_TMUAki_TMT10x_P_F5 54.525 9.5522 47140000 75076000 1925.7 63505000 55675000 58079000 57958000 29017000 28505000 28901000 51624000 43887000 70010000 3423000 65521000 53402000 58849000 57758000 30966000 31108000 28231000 49084000 5 5 1 5 5 5 5 5 5 5 5 27582000 41826000 0 36432000 34435000 41462000 30348000 17314000 16899000 16511000 29327000 25678000 39008000 1978500 37623000 32889000 41386000 30580000 18798000 18221000 16158000 27906000 3 3 0 3 3 3 3 3 3 3 3 19559000 33249000 1925.7 27073000 21240000 16617000 27610000 11703000 11607000 12390000 22298000 18209000 31002000 1444600 27898000 20513000 17463000 27178000 12168000 12887000 12073000 21179000 2 2 1 2 2 2 2 2 2 2 2 3036400000 2429000000 607380000 1192 2216 1125 6180;6181;6182;6183;6184 7540;7541;7542 7541 3 ALGEPITLFGEGPAER Unmodified 1655.8519 0.85188578 200 O43172;O43172-2 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes no 0 0 0 0 By MS/MS By MS/MS 3.25 0.433 3 1 1 3 71.411 71.157 2;3 2.956E-35 24739 20211116_3430_TMUAki_TMT10x_P_F3 206.69 169.5 8573400 14798000 58255 13090000 11114000 11540000 10096000 9819700 9647300 10204000 11067000 7982900 13802000 769570 13451000 10633000 11813000 10280000 10082000 9884500 9949600 10632000 4 4 2 4 4 4 4 4 4 4 4 1882900 3109300 0 2525100 1884500 3832300 2038900 2075900 2071600 2115700 2335900 1753200 2899100 154420 2636800 1810700 3783900 2061100 2200500 2115400 2064700 2245200 1 1 0 1 1 1 1 1 1 1 1 6690500 11689000 58255 10565000 9229700 7708100 8057200 7743700 7575700 8087900 8731500 6229700 10903000 615160 10814000 8822000 8029500 8219200 7881800 7769100 7884900 8387200 3 3 2 3 3 3 3 3 3 3 3 1004000000 302930000 701040000 1193 200 1126 6185;6186;6187;6188 7543;7544;7545;7546;7547 7543 5 ALGEPITLFGEGPAERR Unmodified 1811.953 0.95299681 200 O43172;O43172-2 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes no 0 0 0 1 By MS/MS By MS/MS 4.75 0.829 2 1 1 2 2 59.596 59.652 3 2.6E-21 17831 20211116_3445_TMUAki_TMT10x_S_F6 161.08 141.07 7481100 12470000 8675.3 12672000 10385000 11251000 9143200 11194000 9741300 11913000 10876000 6965300 11637000 608750 12892000 9922900 11548000 9357800 11406000 9924200 11605000 10456000 3 3 1 3 3 3 3 3 3 3 3 2961800 4609200 0 5279800 4915700 6636000 4616400 4324700 3877200 5054800 4528100 2757500 4303400 243000 5359200 4704000 6624800 4675400 4535500 3999900 4906700 4347900 1 1 0 1 1 1 1 1 1 1 1 4519300 7860800 8675.3 7391900 5469200 4615200 4526900 6869400 5864100 6858400 6347500 4207700 7333200 365750 7532600 5219000 4923600 4682500 6870300 5924300 6698700 6108200 2 2 1 2 2 2 2 2 2 2 2 1938600000 871410000 1067200000 1194 200 1127 6189;6190;6191;6192 7548;7549;7550 7550 3 ALGFPLERPK Unmodified 1126.6499 0.64987892 330 O75390 CS Citrate synthase, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 4.86 3.09 2 1 2 2 3 4 49.26 49.361 3 1.7846E-08 15066 20211116_3435_TMUAki_TMT10x_P_F7 162.36 127.83 59446000 96408000 624320 107040000 91040000 85617000 60141000 72557000 70943000 62124000 76197000 55352000 89999000 5617500 108130000 86532000 88249000 62954000 74117000 71886000 61104000 73342000 13 13 6 13 13 13 13 13 13 13 13 32965000 53142000 169110 57917000 66628000 63998000 39504000 40511000 39274000 34334000 41751000 30692000 49605000 3050900 58839000 63194000 64294000 41481000 42189000 40052000 33787000 40199000 6 6 2 6 6 6 6 6 6 6 6 26481000 43266000 455210 49125000 24412000 21619000 20637000 32045000 31669000 27791000 34446000 24660000 40394000 2566600 49291000 23338000 23955000 21472000 31928000 31834000 27317000 33142000 7 7 4 7 7 7 7 7 7 7 7 8689600000 4033600000 4656000000 1195 330 1128 6193;6194;6195;6196;6197;6198;6199 7551;7552;7553;7554;7555;7556;7557;7558;7559;7560;7561;7562;7563 7553 13 ALGGEDVR Unmodified 815.41373 0.41373097 41 CON__P12763 yes yes 0 0 0 0 By MS/MS By MS/MS 2.2 1.17 2 1 1 1 3 2 30.937 30.901 2 0.00099942 8291 20211116_3439_TMUAki_TMT10x_S_F1 130.04 63.24 + 5779800 9975700 5502.2 7837100 8531700 11594000 6917000 6344200 9322500 6774200 8001600 5381000 9300400 448590 8202300 8135500 11461000 7175100 6728100 9331900 6598300 7759800 4 4 1 4 4 4 4 4 4 4 4 4729300 8095000 5502.2 6311600 6996300 10664000 5598000 4863400 7017800 5316300 6358600 4403000 7546900 365870 6629900 6669500 10465000 5795400 5251000 7053900 5173600 6154400 3 3 1 3 3 3 3 3 3 3 3 1050500 1880600 0 1525500 1535300 929880 1319000 1480800 2304700 1457800 1643000 978040 1753500 82717 1572500 1466000 996420 1379700 1477100 2278100 1424700 1605400 1 1 0 1 1 1 1 1 1 1 1 218640000 166780000 51863000 1196 41 1129 6200;6201;6202;6203;6204 7564;7565;7566;7567;7568 7567 5 ALGILKR Unmodified 769.51741 0.51740818 1041 P46063 RECQL ATP-dependent DNA helicase Q1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 39.879 39.948 3 0.0040087 10512 20211116_3431_TMUAki_TMT10x_P_F4 96.666 24.312 2650700 3863300 21742 4271800 2312300 2088900 2820400 1482500 1309800 1681500 2728100 2468200 3606400 235280 4296500 2231200 2249100 2787500 1543900 1449000 1634100 2587800 2 2 2 2 2 2 2 2 2 2 2 234050 298960 1416.7 332310 386520 376470 254590 228840 233700 246810 232940 217930 279090 22860 337310 367380 377480 264490 240660 238640 240310 224740 1 1 1 1 1 1 1 1 1 1 1 2416600 3564300 20326 3939500 1925800 1712500 2565800 1253700 1076100 1434700 2495200 2250300 3327300 212420 3959200 1863800 1871600 2523000 1303200 1210300 1393800 2363100 1 1 1 1 1 1 1 1 1 1 1 168560000 104680000 63885000 1197 1041 1130 6205;6206;6207;6208;6209 7569;7570;7571;7572 7570 4 ALGKHPVSCKDTPGFIVNR Unmodified 2095.0997 0.099677825 1866 Q16836;Q16836-3;Q16836-2 HADH Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial yes no 0 0 0 2 By MS/MS 3 0 1 1 39.502 39.215 5 0.017314 12729 20211116_3441_TMUAki_TMT10x_S_F3 44.641 40.202 436580 799510 14416 814040 338670 424860 376780 950720 791270 759060 636840 406610 746080 48259 823610 326560 468640 393020 934350 781370 749230 619120 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 436580 799510 14416 814040 338670 424860 376780 950720 791270 759060 636840 406610 746080 48259 823610 326560 468640 393020 934350 781370 749230 619120 1 1 1 1 1 1 1 1 1 1 1 67135000 0 67135000 1198 1866 1131 6210 7573 7573 1 ALGLASGELAAR Unmodified 1127.6299 0.62987176 2333 Q8WZA9 IRGQ Immunity-related GTPase family Q protein yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 49.058 49.23 2 4.4762E-07 13193 20211116_3444_TMUAki_TMT10x_S_F5 129.28 96.53 15664000 25184000 27647 27141000 19852000 19084000 15389000 18659000 18964000 16968000 22056000 14584000 23507000 1281600 27429000 18918000 19929000 15954000 18942000 19246000 16642000 21181000 4 4 1 4 4 4 4 4 4 4 4 4184000 5887800 27647 6468100 7579300 8544300 4729300 4478400 4575400 4314000 5329600 3895900 5496100 420200 6588600 7197400 8485000 4941400 4753600 4688200 4220000 5117900 1 1 1 1 1 1 1 1 1 1 1 11480000 19296000 0 20673000 12273000 10540000 10660000 14181000 14389000 12654000 16727000 10688000 18011000 861390 20841000 11721000 11444000 11013000 14188000 14558000 12421000 16063000 3 3 0 3 3 3 3 3 3 3 3 749080000 344760000 404320000 1199 2333 1132 6211;6212;6213;6214 7574;7575;7576;7577;7578 7576 5 ALGLEESLVQEGR Unmodified 1399.7307 0.73070802 1435 P78559;P78559-2 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 yes no 0 0 0 0 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 58.383 58.05 2 2.8908E-11 20444 20211116_3441_TMUAki_TMT10x_S_F3 144.35 111.09 6232100 10488000 126650 11483000 7993900 8502600 7638700 6432100 5813400 5977100 7895000 5803600 9790300 659390 11600000 7663700 8799200 7710300 6630600 6067900 5856300 7551600 2 2 2 2 2 2 2 2 2 2 2 2593600 4156300 35007 4426900 3864200 5591500 3628000 3155800 3212100 3068500 3512500 2415100 3879300 265450 4514400 3701400 5569600 3679500 3328900 3296600 3000500 3379100 1 1 1 1 1 1 1 1 1 1 1 3638500 6331800 91643 7056400 4129700 2911200 4010700 3276300 2601300 2908600 4382600 3388500 5911000 393950 7085500 3962300 3229600 4030800 3301700 2771200 2855800 4172600 1 1 1 1 1 1 1 1 1 1 1 650840000 324700000 326130000 1200 1435 1133 6215;6216;6217 7579;7580;7581 7581 3 ALGLFSNDIPHVVR Unmodified 1536.8413 0.84126152 2259 Q8NI36 WDR36 WD repeat-containing protein 36 yes yes 0 0 0 0 By MS/MS 1 0 1 1 63.524 63.26 3 4.55E-14 21506 20211116_3439_TMUAki_TMT10x_S_F1 148.62 128.96 3653000 6309500 56857 5857500 3614400 3295300 3565400 4137600 3968900 3763600 4720200 3401700 5885700 347550 5969200 3467400 3534000 3631600 4153100 4046700 3691100 4530200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3653000 6309500 56857 5857500 3614400 3295300 3565400 4137600 3968900 3763600 4720200 3401700 5885700 347550 5969200 3467400 3534000 3631600 4153100 4046700 3691100 4530200 2 2 1 2 2 2 2 2 2 2 2 260580000 0 260580000 1201 2259 1134 6218 7582;7583 7582 2 ALGLVIR Unmodified 740.49086 0.49085908 2350 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 51.463 51.2 2 0.005095 14773 20211116_3440_TMUAki_TMT10x_S_F2 110.17 9.8124 1512300 2552800 0 2665100 1658800 1483100 1580400 2187100 2010800 2064300 2190800 1408100 2382400 120860 2693300 1588200 1599600 1620500 2184500 2033200 2021200 2107800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1512300 2552800 0 2665100 1658800 1483100 1580400 2187100 2010800 2064300 2190800 1408100 2382400 120860 2693300 1588200 1599600 1620500 2184500 2033200 2021200 2107800 1 1 0 1 1 1 1 1 1 1 1 174530000 0 174530000 1202 2350 1135 6219;6220;6221;6222 7584;7585 7585 2 ALGNICYDSHEGR Unmodified 1490.6572 0.6572255 1175 P52306;P52306-4;P52306-5 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 yes no 0 0 0 0 By MS/MS 4 0 1 1 35.571 35.596 3 0.00054645 8644 20211116_3431_TMUAki_TMT10x_P_F4 78.814 68.86 611610 917280 12486 1112000 1346600 1238900 797650 761360 733270 657700 912970 569560 856640 72638 1122600 1278200 1243500 835800 795090 755170 646620 875150 1 1 1 1 1 1 1 1 1 1 1 611610 917280 12486 1112000 1346600 1238900 797650 761360 733270 657700 912970 569560 856640 72638 1122600 1278200 1243500 835800 795090 755170 646620 875150 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 60795000 60795000 0 1203 1175 1136 6223 7586 7586 1 ALGPEQLLR Unmodified 995.57638 0.57637963 958 P36915;P36915-2 GNL1 Guanine nucleotide-binding protein-like 1 yes no 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 51.738 51.896 2 0.009787 14277 20211116_3444_TMUAki_TMT10x_S_F5 70.332 41.25 2937200 5015800 69320 4762700 2827200 2996100 2563000 4889300 5521700 4369300 4485400 2735300 4679400 306580 4850200 2708400 3203700 2705100 4860000 5451100 4288700 4359000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2937200 5015800 69320 4762700 2827200 2996100 2563000 4889300 5521700 4369300 4485400 2735300 4679400 306580 4850200 2708400 3203700 2705100 4860000 5451100 4288700 4359000 1 1 1 1 1 1 1 1 1 1 1 270230000 0 270230000 1204 958 1137 6224;6225 7587 7587 1 ALGPGGELEPERLPR Unmodified 1589.8526 0.85255449 2196 Q8N511 TMEM199 Transmembrane protein 199 yes yes 0 0 0 1 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 44.109 43.959 3 1.8305E-24 13482 20211116_3430_TMUAki_TMT10x_P_F3 196.33 169.79 3001000 4713400 97641 5290600 3590900 3239400 2885700 2951000 3157200 2690700 3907400 2795000 4400300 348070 5325800 3431300 3420100 2972400 3007100 3226600 2638600 3746100 3 3 3 3 3 3 3 3 3 3 3 769520 1290800 38212 1395900 1471200 1496300 958370 821100 908570 697510 1053800 716790 1204800 109240 1418100 1400000 1503000 997390 865210 931650 686320 1012000 1 1 1 1 1 1 1 1 1 1 1 2231500 3422600 59429 3894700 2119800 1743100 1927400 2129900 2248600 1993200 2853600 2078200 3195400 238830 3907700 2031300 1917100 1975000 2141900 2295000 1952300 2734100 2 2 2 2 2 2 2 2 2 2 2 199270000 87405000 111860000 1205 2196 1138 6226;6227;6228 7588;7589;7590;7591 7588 4 ALGQNPTNAEVLK Unmodified 1353.7252 0.72522871 1275;673 P60660;P60660-2;P14649 MYL6;MYL6B Myosin light polypeptide 6;Myosin light chain 6B no no 0 0 0 0 By MS/MS By MS/MS 4.7 0.64 4 5 1 5 5 46.811 46.977 2;3 3.3379E-41 13416 20211116_3433_TMUAki_TMT10x_P_F5 247.3 200.41 26312000 42079000 339150 46188000 47376000 44606000 29559000 39142000 41483000 30964000 40750000 24501000 39279000 2705400 46805000 44994000 45417000 31284000 39827000 41654000 30578000 39333000 9 9 6 9 9 9 9 9 9 9 9 15277000 23418000 203300 25777000 37152000 35845000 20943000 21972000 23094000 17157000 23978000 14226000 21861000 1698500 26281000 35224000 35584000 22158000 22895000 23431000 16954000 23103000 5 5 3 5 5 5 5 5 5 5 5 11035000 18660000 135850 20410000 10224000 8761500 8615600 17170000 18389000 13807000 16773000 10275000 17419000 1006900 20524000 9769900 9833100 9125900 16932000 18222000 13623000 16230000 4 4 3 4 4 4 4 4 4 4 4 2345300000 1591900000 753350000 1206 1275;673 1139 6229;6230;6231;6232;6233;6234;6235;6236;6237;6238 7592;7593;7594;7595;7596;7597;7598;7599;7600;7601;7602;7603 7597 12 ALGTEVIQLFPEK Unmodified 1443.7973 0.79733102 448 O95831;O95831-3;O95831-2 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 6.7 0.9 1 3 4 2 5 5 77.571 77.592 2;3 2.9332E-19 27267 20211116_3446_TMUAki_TMT10x_S_F7 193.83 166.21 31708000 51651000 304600 44991000 38535000 44753000 39242000 33983000 32541000 34925000 39783000 29525000 48171000 2962500 46366000 36982000 45364000 39560000 35123000 33656000 34071000 38153000 6 6 5 6 6 6 6 6 6 6 6 10871000 17533000 160580 14829000 10453000 19861000 13297000 11345000 10850000 11505000 13389000 10124000 16350000 1045100 15394000 10104000 19731000 13264000 11969000 11235000 11230000 12838000 2 2 2 2 2 2 2 2 2 2 2 20837000 34118000 144020 30163000 28082000 24892000 25944000 22638000 21692000 23419000 26394000 19402000 31821000 1917400 30972000 26878000 25633000 26296000 23154000 22421000 22840000 25315000 4 4 3 4 4 4 4 4 4 4 4 4895300000 1682700000 3212500000 1207 448 1140 6239;6240;6241;6242;6243;6244;6245;6246;6247;6248 7604;7605;7606;7607;7608;7609;7610;7611 7610 8 ALGTPNNEVWPEVESLQDYK Unmodified 2288.0961 0.096091815 517 P06493;P06493-2 CDK1 Cyclin-dependent kinase 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 77.368 77.361 3 1.178E-06 25893 20211116_3433_TMUAki_TMT10x_P_F5 85.974 75.186 10990000 18439000 118660 17516000 12450000 17291000 14218000 8785600 8005100 10382000 12634000 10233000 17203000 1041100 17931000 11989000 17438000 14137000 9409600 8579900 10074000 12044000 3 3 2 3 3 3 3 3 3 3 3 7390100 12363000 47403 11730000 7612000 13837000 9458400 6206000 5909300 7130400 8710900 6881300 11534000 658900 12043000 7347900 13795000 9387600 6722600 6266400 6925800 8316300 2 2 1 2 2 2 2 2 2 2 2 3599600 6076100 71261 5786300 4838300 3454200 4759900 2579600 2095800 3251500 3923100 3352100 5668500 382190 5888500 4641500 3643100 4749800 2687000 2313600 3147900 3727900 1 1 1 1 1 1 1 1 1 1 1 3194600000 2294200000 900370000 1208 517 1141 6249;6250;6251;6252;6253 7612;7613;7614;7615 7612 4 ALGYFAVVTGK Unmodified 1124.623 0.62299547 264 O60313;O60313-2;O60313-13;O60313-9;O60313-11;O60313-10 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 72.124 71.953 2 1.8751E-06 23835 20211116_3442_TMUAki_TMT10x_S_F4 130.66 74.224 24190000 40099000 543140 38422000 30395000 32779000 31427000 21233000 19739000 22068000 29964000 22527000 37411000 2554200 39231000 29200000 33481000 31462000 22196000 20955000 21518000 28589000 5 5 4 5 5 5 5 5 5 5 5 10689000 16697000 233770 16414000 11574000 18098000 14173000 8641100 8149100 9008200 12814000 9953900 15579000 1072000 16790000 11175000 18120000 14053000 9274000 8719500 8782800 12217000 2 2 1 2 2 2 2 2 2 2 2 13501000 23403000 309370 22008000 18820000 14681000 17255000 12592000 11590000 13060000 17150000 12573000 21832000 1482200 22441000 18025000 15361000 17409000 12922000 12236000 12736000 16371000 3 3 3 3 3 3 3 3 3 3 3 1344100000 645210000 698860000 1209 264 1142 6254;6255;6256;6257 7616;7617;7618;7619;7620 7620 5 ALHFVFK Unmodified 860.49086 0.49085908 2862 Q9HC38-2;Q9HC38;Q9HC38-3 GLOD4 Glyoxalase domain-containing protein 4 yes no 0 0 0 0 By MS/MS 3 0 1 1 53.257 52.883 3 0.0096045 18333 20211116_3441_TMUAki_TMT10x_S_F3 82.263 61.361 726360 1263400 2035.6 1213800 864910 679860 616320 1688400 1498200 1220600 1300000 676330 1178700 64058 1233800 823190 748200 665460 1651800 1478600 1211300 1260200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 726360 1263400 2035.6 1213800 864910 679860 616320 1688400 1498200 1220600 1300000 676330 1178700 64058 1233800 823190 748200 665460 1651800 1478600 1211300 1260200 1 1 1 1 1 1 1 1 1 1 1 92698000 0 92698000 1210 2862 1143 6258 7621 7621 1 ALHLGNNVLQSLPSR Unmodified 1617.8951 0.895088 2148 Q8IWT6 LRRC8A Volume-regulated anion channel subunit LRRC8A yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 3 1 2 52.973 52.674 3 1.9437E-06 18233 20211116_3441_TMUAki_TMT10x_S_F3 90.476 69.813 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1211 2148 1144 6259;6260;6261 7622;7623;7624 7624 3 ALHNLAQQAPEFSATQVFPR Unmodified 2224.1389 0.1389001 2669 Q9BTW9;Q9BTW9-4;Q9BTW9-5;Q9BTW9-3 TBCD Tubulin-specific chaperone D yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 60.086 59.94 3 2.7896E-32 20098 20211116_3439_TMUAki_TMT10x_S_F1 188.71 167.97 7938800 13061000 115370 13743000 9113700 12790000 8047700 10242000 10049000 8934400 9767900 7392600 12189000 782160 13958000 8718800 13031000 8280800 10503000 10125000 8779700 9431500 4 4 4 4 4 4 4 4 4 4 4 4223200 6836200 97313 7334100 5650400 8959000 4733100 5609800 5434200 4538700 4979300 3933000 6380800 460810 7471100 5400700 8951400 4870700 5840600 5481600 4476800 4817500 2 2 2 2 2 2 2 2 2 2 2 3715500 6224400 18059 6409200 3463300 3830800 3314600 4632300 4614300 4395700 4788600 3459700 5808700 321340 6486900 3318100 4079600 3410100 4662200 4643600 4302800 4614000 2 2 2 2 2 2 2 2 2 2 2 1500700000 889180000 611540000 1212 2669 1145 6262;6263 7625;7626;7627;7628 7627 4 ALHSLLLR Unmodified 921.57599 0.5759857 1770 Q15102 PAFAH1B3 Platelet-activating factor acetylhydrolase IB subunit gamma yes yes 0 0 0 0 By MS/MS By MS/MS 2.55 0.988 2 3 4 2 6 5 42.358 42.271 2;3 0.00015499 12998 20211116_3439_TMUAki_TMT10x_S_F1 143.12 82.149 7165300 11580000 22186 12874000 14406000 13147000 8193500 9782600 8326400 8026800 10247000 6671100 10811000 629480 13046000 13653000 13300000 8639900 10064000 8533000 7911700 9825000 11 11 6 11 11 11 11 11 11 11 11 4526500 6845500 15047 7848900 11283000 10755000 5781600 5940900 5241200 4888400 6208900 4214200 6391300 417210 7979800 10677000 10669000 6135500 6251700 5390000 4817600 5959600 6 6 4 6 6 6 6 6 6 6 6 2638800 4734900 7139.1 5025000 3123100 2391200 2411800 3841800 3085200 3138400 4037600 2456900 4419300 212270 5066500 2975800 2631000 2504500 3811800 3143000 3094100 3865500 5 5 2 5 5 5 5 5 5 5 5 1795200000 1061900000 733250000 1213 1770 1146 6264;6265;6266;6267;6268;6269;6270;6271;6272;6273;6274 7629;7630;7631;7632;7633;7634;7635;7636;7637;7638;7639 7635 11 ALIAAQLDNAIEK Unmodified 1368.7613 0.76127986 2721 Q9BXY0 MAK16 Protein MAK16 homolog yes yes 0 0 0 0 By MS/MS 6 0 1 1 67.573 67.507 3 2.2025E-08 21029 20211116_3445_TMUAki_TMT10x_S_F6 108.59 83.378 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1214 2721 1147 6275 7640 7640 1 ALIAAQYSGAQVR Unmodified 1346.7306 0.73064844 821 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 By MS/MS By MS/MS 3.89 2.77 4 4 4 2 4 8 10 45.784 45.683 2;3 1.1279E-78 13822 20211116_3429_TMUAki_TMT10x_P_F2 350.77 235.79 42178000 65365000 182620 75131000 66901000 68815000 42116000 58388000 59843000 47025000 56616000 39269000 61029000 3357400 75862000 63505000 70260000 44565000 59551000 59990000 46395000 54715000 22 22 9 22 22 22 22 22 22 22 22 24235000 36161000 133500 41034000 53810000 55826000 29120000 32208000 33181000 25508000 30799000 22564000 33760000 2077300 41738000 50964000 55429000 30954000 33738000 33494000 25189000 29785000 12 12 6 12 12 12 12 12 12 12 12 17943000 29204000 49128 34097000 13091000 12989000 12997000 26180000 26662000 21517000 25816000 16706000 27269000 1280100 34123000 12541000 14831000 13611000 25813000 26496000 21206000 24930000 10 10 3 10 10 10 10 10 10 10 10 19947000000 13508000000 6438600000 1215 821 1148 6276;6277;6278;6279;6280;6281;6282;6283;6284;6285;6286;6287;6288;6289;6290;6291;6292;6293 7641;7642;7643;7644;7645;7646;7647;7648;7649;7650;7651;7652;7653;7654;7655;7656;7657;7658;7659;7660;7661;7662;7663;7664;7665 7643 25 ALIAGGGAPEIELALR Unmodified 1549.8828 0.88279198 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 By MS/MS By MS/MS 4.95 1.55 1 4 4 4 4 5 11 11 73.061 73.053 2;3 7.8828E-60 23220 20211116_3445_TMUAki_TMT10x_S_F6 284.28 232.52 82007000 136760000 965080 128060000 96737000 123660000 99809000 82320000 75872000 84940000 104930000 76362000 127580000 7585200 131190000 92871000 125320000 100340000 85862000 79265000 82849000 100330000 27 27 17 27 27 27 27 27 27 27 27 48550000 78662000 498780 75099000 50026000 86516000 56651000 47412000 45385000 50011000 61800000 45208000 73386000 4393000 77035000 48157000 86554000 56768000 50256000 47247000 48737000 59109000 16 16 10 16 16 16 16 16 16 16 16 33457000 58100000 466290 52961000 46710000 37148000 43158000 34908000 30487000 34929000 43134000 31154000 54194000 3192200 54155000 44714000 38769000 43570000 35606000 32019000 34112000 41218000 11 11 7 11 11 11 11 11 11 11 11 36310000000 16776000000 19535000000 1216 1147 1149 6294;6295;6296;6297;6298;6299;6300;6301;6302;6303;6304;6305;6306;6307;6308;6309;6310;6311;6312;6313;6314;6315 7666;7667;7668;7669;7670;7671;7672;7673;7674;7675;7676;7677;7678;7679;7680;7681;7682;7683;7684;7685;7686;7687;7688;7689;7690;7691;7692;7693;7694;7695 7693 30 ALIDPSSGLPNRLPPGAVPPGAR Unmodified 2251.2437 0.24369953 2337 Q92530 PSMF1 Proteasome inhibitor PI31 subunit yes yes 0 0 0 1 By MS/MS 3 0 1 1 59.206 58.796 3 5.81E-05 20811 20211116_3441_TMUAki_TMT10x_S_F3 68.411 58.611 4258100 8160100 122010 7414600 5275100 5442600 3865200 8425800 7456400 6526700 6893500 3965500 7611400 465050 7587300 5028900 5733300 4105600 8359300 7408500 6452600 6667300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4258100 8160100 122010 7414600 5275100 5442600 3865200 8425800 7456400 6526700 6893500 3965500 7611400 465050 7587300 5028900 5733300 4105600 8359300 7408500 6452600 6667300 2 2 1 2 2 2 2 2 2 2 2 335290000 0 335290000 1217 2337 1150 6316 7696;7697 7697 2 ALIEILATR Unmodified 998.61243 0.61243078 548 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 By MS/MS By MS/MS 4 3.29 2 1 2 2 3 70.576 70.546 2 3.2955E-05 24507 20211116_3439_TMUAki_TMT10x_S_F1 119.86 36.858 11647000 18658000 37728 18620000 13921000 19353000 13647000 12768000 11945000 12868000 13423000 10844000 17410000 900450 19009000 13335000 19522000 13804000 13317000 12279000 12563000 12903000 3 3 1 3 3 3 3 3 3 3 3 8134600 12621000 0 12787000 9115700 15491000 9439500 8687500 8304600 8614000 9004700 7573100 11777000 555980 13074000 8740100 15461000 9522800 9174000 8523000 8415900 8664800 2 2 0 2 2 2 2 2 2 2 2 3512500 6036700 37728 5832400 4805100 3862200 4207600 4080500 3640000 4254000 4418400 3270700 5632100 344470 5934900 4594700 4061000 4281600 4143000 3755600 4147500 4238200 1 1 1 1 1 1 1 1 1 1 1 1914400000 1211100000 703220000 1218 548 1151 6317;6318;6319;6320;6321 7698;7699;7700;7701;7702 7700 5 ALIEMEK Unmodified 832.43644 0.43644025 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 0 By MS/MS 5 0 1 1 50.401 50.585 2 0.013294 13763 20211116_3444_TMUAki_TMT10x_S_F5 91.065 10.886 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1219 1779 1152 6322 7703 7703 1 ALIEVLQPLIAEHQAR Unmodified 1800.0258 0.025767826 782 P23381;P23381-2 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 0 0 0 0 By MS/MS By MS/MS 6.2 2.64 1 2 2 2 3 76.67 76.682 3 2.2593E-29 25046 20211116_3436_TMUAki_TMT10x_P_F8 192.54 154.14 13542000 22471000 236210 19826000 16126000 20637000 17760000 17239000 16200000 17345000 16663000 12611000 20958000 1377200 20424000 15517000 20898000 17881000 17703000 16565000 16935000 16059000 6 6 5 6 6 6 6 6 6 6 6 5881800 9329600 78062 8362500 5827400 11547000 7621400 7586100 7482600 7546500 6849900 5477100 8701900 559630 8647100 5637400 11478000 7632600 7911700 7595900 7372000 6627500 2 2 2 2 2 2 2 2 2 2 2 7660300 13141000 158150 11463000 10298000 9090200 10139000 9653400 8717000 9798100 9812600 7133700 12256000 817590 11777000 9880100 9419500 10248000 9790800 8969100 9563400 9432000 4 4 3 4 4 4 4 4 4 4 4 5528200000 2466700000 3061500000 1220 782 1153 6323;6324;6325;6326;6327 7704;7705;7706;7707;7708;7709 7705 6 ALIGNILATGLP Unmodified 1151.6914 0.69140938 2603 Q99741 CDC6 Cell division control protein 6 homolog yes yes 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 81.902 81.882 2 0.0055005 30017 20211116_3441_TMUAki_TMT10x_S_F3 67.993 45.163 361440 612330 3689 594950 522940 405320 536580 381440 411850 445720 529100 336560 571300 35666 605340 501990 424070 539700 390950 428610 432670 506770 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 361440 612330 3689 594950 522940 405320 536580 381440 411850 445720 529100 336560 571300 35666 605340 501990 424070 539700 390950 428610 432670 506770 1 1 1 1 1 1 1 1 1 1 1 73798000 0 73798000 1221 2603 1154 6328;6329 7710 7710 1 ALILSPTR Unmodified 869.53345 0.53345218 2279 Q8TDD1;Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 yes no 0 0 0 0 By MS/MS 1 0 1 1 43.695 43.498 2 0.0030478 13430 20211116_3439_TMUAki_TMT10x_S_F1 100.19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1222 2279 1155 6330 7711 7711 1 ALINADELASDVAGAEALLDR Unmodified 2126.0855 0.085527129 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 1.4 0.49 3 2 2 3 81.484 81.467 2;3 5.0137E-54 26950 20211116_3428_TMUAki_TMT10x_P_F1 218.78 164.17 3024900 5164300 3436.9 5088900 3524200 4135200 3781100 2834500 2855800 3103900 4048600 2816200 4818500 224920 5182600 3383400 4242300 3793200 2955700 2988100 3020300 3868700 3 3 1 3 3 3 3 3 3 3 3 893840 1206600 0 1338200 621570 1420000 870370 725400 727230 794490 1035100 832000 1126400 37629 1357100 600120 1426000 865410 774660 757020 773100 989030 1 1 0 1 1 1 1 1 1 1 1 2131000 3957600 3436.9 3750700 2902600 2715200 2910700 2109100 2128600 2309400 3013500 1984200 3692100 187290 3825500 2783300 2816300 2927800 2181000 2231100 2247200 2879600 2 2 1 2 2 2 2 2 2 2 2 1462800000 641060000 821740000 1223 1663 1156 6331;6332;6333;6334;6335 7712;7713;7714;7715;7716 7712 5 ALIPLALEGTDVGQTK Unmodified 1624.9036 0.903587 2802 Q9H3U1;Q9H3U1-2 UNC45A Protein unc-45 homolog A yes no 0 0 0 0 By matching By MS/MS 6 0 2 1 1 75.095 75.042 3 4.4764E-15 24100 20211116_3445_TMUAki_TMT10x_S_F6 144.12 127.35 5659200 10074000 153890 9486400 7904300 6379700 7013500 5824400 5358800 5462600 7649000 5270400 9398300 644050 9672700 7565900 6678300 7109400 5939100 5605300 5350000 7307800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5659200 10074000 153890 9486400 7904300 6379700 7013500 5824400 5358800 5462600 7649000 5270400 9398300 644050 9672700 7565900 6678300 7109400 5939100 5605300 5350000 7307800 2 2 2 2 2 2 2 2 2 2 2 1095800000 474800000 620960000 1224 2802 1157 6336;6337 7717;7718 7717 2 ALIVEPSR Unmodified 883.51272 0.51271674 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 1.5 1 2 2 2 2 1 4 6 38.807 38.938 2 0.00067258 9216 20211116_3444_TMUAki_TMT10x_S_F5 136.11 69.431 13340000 19989000 12341 21069000 16394000 15506000 12412000 10093000 11220000 9918200 15153000 12419000 18656000 986160 21334000 15609000 16018000 12762000 10529000 11606000 9693800 14496000 9 9 2 9 9 9 9 9 9 9 9 7567700 10972000 0 11476000 12061000 10756000 7053400 4718400 5488800 5040300 8162900 7045100 10240000 543630 11661000 11429000 10867000 7367900 5111700 5747300 4909300 7791700 3 3 0 3 3 3 3 3 3 3 3 5771900 9016500 12341 9592800 4333600 4749900 5358800 5374100 5731200 4878000 6989900 5374100 8415500 442540 9673100 4180000 5151600 5393600 5417700 5858900 4784500 6703900 6 6 2 6 6 6 6 6 6 6 6 1677200000 758280000 918910000 1225 2334 1158 6338;6339;6340;6341;6342;6343;6344;6345;6346;6347 7719;7720;7721;7722;7723;7724;7725;7726;7727;7728;7729 7727 11 ALIVEPSRELAEQTLNNIK Unmodified 2137.1743 0.17428256 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 1 By MS/MS By MS/MS 6.04 2.31 4 2 4 9 7 14 12 71.036 71.096 2;3;4 2.1706E-149 21649 20211116_3447_TMUAki_TMT10x_S_F8 400.06 348.34 526180000 805580000 3890900 823440000 441560000 598270000 482140000 284490000 303250000 304880000 496530000 489940000 751760000 44857000 835420000 424560000 616320000 481400000 305690000 323200000 296920000 473010000 42 42 29 42 42 42 42 42 42 42 42 351720000 525130000 2144900 537460000 264230000 432350000 297710000 176360000 194690000 193940000 322350000 327500000 490050000 29069000 545850000 254270000 441180000 297050000 192760000 207110000 188690000 307010000 24 24 15 24 24 24 24 24 24 24 24 174450000 280450000 1746000 285980000 177320000 165920000 184430000 108130000 108560000 110940000 174180000 162440000 261710000 15787000 289560000 170290000 175140000 184350000 112940000 116090000 108230000 166000000 18 18 14 18 18 18 18 18 18 18 18 96674000000 51624000000 45050000000 1226 2334 1159 6348;6349;6350;6351;6352;6353;6354;6355;6356;6357;6358;6359;6360;6361;6362;6363;6364;6365;6366;6367;6368;6369;6370;6371;6372;6373 7730;7731;7732;7733;7734;7735;7736;7737;7738;7739;7740;7741;7742;7743;7744;7745;7746;7747;7748;7749;7750;7751;7752;7753;7754;7755;7756;7757;7758;7759;7760;7761;7762;7763;7764;7765;7766;7767;7768;7769;7770;7771;7772;7773 7772 44 ALIVGHCMPGPR Unmodified 1306.6638 0.6638312 1992 Q6P1L8 MRPL14 39S ribosomal protein L14, mitochondrial yes yes 0 0 0 0 By MS/MS 2 0 1 1 39.044 38.795 3 0.04462 11029 20211116_3429_TMUAki_TMT10x_P_F2 46.73 33.638 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1227 1992 1160 6374 7774 7774 1 ALIVGHCMPGPR Oxidation (M) 1322.6587 0.65874582 1992 Q6P1L8 MRPL14 39S ribosomal protein L14, mitochondrial yes yes 0 0 1 0 By matching By MS/MS 1.33 0.471 2 1 1 2 32.555 32.57 3 0.009104 8926 20211116_3439_TMUAki_TMT10x_S_F1 58.889 42.665 588170 905950 0 1031500 658810 445100 628060 415670 361030 394640 711130 547640 845820 49453 1034700 630900 488950 630410 423480 391390 386290 675160 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 588170 905950 0 1031500 658810 445100 628060 415670 361030 394640 711130 547640 845820 49453 1034700 630900 488950 630410 423480 391390 386290 675160 1 1 0 1 1 1 1 1 1 1 1 28557000 15248000 13309000 1228 1992 1160 6375;6376;6377 7775;7776 7775 2543 2 ALIVLAHSER Unmodified 1107.64 0.64004252 685 P15559;P15559-3;P15559-2 NQO1 NAD(P)H dehydrogenase [quinone] 1 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 39.402 39.952 3 0.0017781 11526 20211116_3435_TMUAki_TMT10x_P_F7 70.441 57.393 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1229 685 1161 6378;6379 7777;7778 7777 2 ALIVVPYAEGVIPDEAK Unmodified 1782.9768 0.97675195 1519 Q05519;Q05519-2 SRSF11 Serine/arginine-rich splicing factor 11 yes no 0 0 0 0 By MS/MS By MS/MS 5.29 1.03 4 4 4 2 10 4 72.184 72.195 2;3 2.6479E-07 24888 20211116_3434_TMUAki_TMT10x_P_F6 108.37 84.997 45857000 77938000 176260 72006000 53736000 81204000 59939000 48187000 45751000 52605000 56261000 42695000 72703000 3650900 74015000 51663000 81416000 60035000 50792000 47537000 51195000 53948000 11 11 6 11 11 11 11 11 11 11 11 33658000 57407000 128940 53464000 37330000 67566000 44558000 37191000 34636000 39577000 41685000 31338000 53553000 2724400 55031000 35968000 67279000 44512000 39417000 35920000 38555000 39994000 8 8 5 8 8 8 8 8 8 8 8 12199000 20531000 47320 18542000 16406000 13638000 15381000 10997000 11115000 13028000 14576000 11357000 19150000 926490 18983000 15696000 14136000 15523000 11375000 11617000 12640000 13954000 3 3 1 3 3 3 3 3 3 3 3 9144900000 5706700000 3438200000 1230 1519 1162 6380;6381;6382;6383;6384;6385;6386;6387;6388;6389;6390;6391;6392;6393 7779;7780;7781;7782;7783;7784;7785;7786;7787;7788;7789;7790;7791;7792 7788 14 ALIVVQQGMTPSAK Oxidation (M) 1457.7912 0.79119978 732 P19388 POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1 yes yes 0 0 1 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 49.59 49.522 3 0.00010396 13966 20211116_3436_TMUAki_TMT10x_P_F8 87.498 70.28 9787000 14558000 149630 16880000 13784000 15584000 10519000 11176000 11030000 9803600 12235000 9113300 13593000 953550 17037000 13140000 15857000 10857000 11544000 11242000 9631200 11765000 4 4 3 4 4 4 4 4 4 4 4 6651600 9387000 18998 10698000 10718000 12769000 7526300 6893800 6789600 6109600 7595500 6193000 8764000 572840 10852000 10194000 12748000 7778300 7282100 6968100 5999300 7302100 2 2 1 2 2 2 2 2 2 2 2 3135400 5171300 130630 6182100 3066000 2815200 2993100 4281800 4240700 3694000 4639500 2920300 4829100 380720 6185000 2945900 3108600 3078400 4261800 4273700 3631900 4463200 2 2 2 2 2 2 2 2 2 2 2 658780000 478330000 180450000 1231 732 1163 6394;6395;6396;6397 7793;7794;7795;7796 7794 839 4 ALKDEEKMELQEIQLK Oxidation (M) 1960.0187 0.018693117 526;527;525 P06753-2;P06753-3;P06753-5;P06753-4;P06753-7;P06753-6;P06753 TPM3 Tropomyosin alpha-3 chain no no 0 0 1 2 By MS/MS By MS/MS 5.6 1.02 1 1 2 1 3 2 56.237 56.514 3;4 1.2191E-05 16221 20211116_3444_TMUAki_TMT10x_S_F5 97.579 64.891 68198000 120960000 802500 105210000 128650000 188860000 90028000 145630000 151980000 127150000 113860000 63503000 112810000 7080200 109700000 122420000 186260000 95256000 149690000 150550000 124950000 111020000 9 9 7 9 9 9 9 9 9 9 9 53115000 92307000 685580 81156000 114220000 172910000 79670000 108630000 114550000 96002000 85607000 49459000 86090000 5729900 84952000 108680000 169040000 83699000 113310000 113980000 94280000 83478000 7 7 5 7 7 7 7 7 7 7 7 15082000 28654000 116930 24058000 14432000 15950000 10357000 36997000 37429000 31153000 28258000 14044000 26720000 1350300 24746000 13743000 17222000 11557000 36378000 36568000 30666000 27543000 2 2 2 2 2 2 2 2 2 2 2 5820900000 3934300000 1886600000 1232 526;527;525 1164 6398;6399;6400;6401;6402 7797;7798;7799;7800;7801;7802;7803;7804;7805;7806 7805 447 10 ALKDEEKMELQEIQLK Unmodified 1944.0238 0.023778495 526;527;525 P06753-2;P06753-3;P06753-5;P06753-4;P06753-7;P06753-6;P06753 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 2 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 58.754 58.826 4 6.4321E-21 17989 20211116_3431_TMUAki_TMT10x_P_F4 164.57 119.97 53074000 89823000 781340 83590000 71584000 65177000 54096000 37512000 31016000 39118000 60811000 49423000 83791000 5333600 85440000 68242000 66912000 55072000 39584000 33620000 38139000 57740000 7 7 6 7 7 7 7 7 7 7 7 20656000 32669000 386200 31083000 37386000 40350000 30256000 15575000 13548000 15843000 23154000 19236000 30478000 2306800 31961000 35692000 39978000 30546000 17094000 14854000 15462000 22039000 3 3 3 3 3 3 3 3 3 3 3 32418000 57154000 395140 52506000 34198000 24827000 23840000 21937000 17468000 23275000 37657000 30187000 53313000 3026800 53479000 32550000 26934000 24526000 22490000 18766000 22676000 35702000 4 4 3 4 4 4 4 4 4 4 4 5071800000 2980200000 2091600000 1233 526;527;525 1164 6403;6404;6405;6406;6407;6408 7807;7808;7809;7810;7811;7812;7813 7807 7 ALKDPNAFLFDHLLTLKPVK Unmodified 2279.3042 0.30417452 2056 Q7L2H7;Q7L2H7-2 EIF3M Eukaryotic translation initiation factor 3 subunit M yes no 0 0 0 2 By MS/MS By MS/MS 4.2 0.748 1 2 2 2 3 76.664 76.635 5 3.9523E-24 25294 20211116_3431_TMUAki_TMT10x_P_F4 160.67 118.76 29424000 46187000 748860 50262000 28936000 40203000 32795000 21750000 19484000 23586000 30161000 27402000 43113000 3071600 50837000 27884000 41162000 32651000 23100000 20783000 22960000 28764000 5 5 4 5 5 5 5 5 5 5 5 21125000 31986000 631430 35780000 20067000 31722000 21845000 14994000 13367000 15547000 20805000 19674000 29861000 2325100 36173000 19324000 32190000 21803000 16106000 14234000 15161000 19839000 2 2 2 2 2 2 2 2 2 2 2 8299100 14201000 117430 14482000 8869400 8481300 10950000 6756300 6116500 8039000 9355800 7727700 13252000 746540 14664000 8560000 8971500 10848000 6994800 6549000 7798400 8925000 3 3 2 3 3 3 3 3 3 3 3 12455000000 6621100000 5833500000 1234 2056 1165 6409;6410;6411;6412;6413 7814;7815;7816;7817;7818 7814 5 ALKEPPRDR Unmodified 1080.604 0.60399136 864 P30050;P30050-2 RPL12 60S ribosomal protein L12 yes no 0 0 0 2 By MS/MS 5 0 1 1 27.156 27.082 3 0.012547 5547 20211116_3433_TMUAki_TMT10x_P_F5 67.414 46.512 325440 520710 4864.9 396540 373660 570720 354520 293030 328310 303940 407170 303050 485410 32190 415910 358090 564430 359790 312270 337940 296390 390340 1 1 1 1 1 1 1 1 1 1 1 325440 520710 4864.9 396540 373660 570720 354520 293030 328310 303940 407170 303050 485410 32190 415910 358090 564430 359790 312270 337940 296390 390340 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24914000 24914000 0 1235 864 1166 6414 7819 7819 1 ALKPPPIK Unmodified 862.56402 0.56402403 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 1 By MS/MS By MS/MS 4 2.35 1 2 1 2 2 36.231 36.232 3 0.0028977 5738 20211116_3430_TMUAki_TMT10x_P_F3 86.011 34.015 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1236 647 1167 6415;6416;6417;6418 7820;7821;7822;7823 7820 4 ALLAANEEEDREIR Unmodified 1627.8166 0.81656291 1916 Q5C9Z4 NOM1 Nucleolar MIF4G domain-containing protein 1 yes yes 0 0 0 1 By matching By MS/MS 1.75 0.829 2 1 1 1 3 38.59 38.531 3 1.3699E-19 11489 20211116_3439_TMUAki_TMT10x_S_F1 147.56 133.48 289330 476190 0 530500 285540 230100 298030 392260 379290 296780 430730 269390 444540 22992 532870 274040 256590 304170 387790 384130 293780 413920 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 289330 476190 0 530500 285540 230100 298030 392260 379290 296780 430730 269390 444540 22992 532870 274040 256590 304170 387790 384130 293780 413920 1 1 0 1 1 1 1 1 1 1 1 105060000 71196000 33867000 1237 1916 1168 6419;6420;6421;6422 7824;7825 7824 2 ALLAEGVILRR Unmodified 1209.7557 0.75574098 3281 Q9Y3D9 MRPS23 28S ribosomal protein S23, mitochondrial yes yes 0 0 0 1 By matching By MS/MS 2.33 0.471 2 1 1 2 51.714 51.501 3 1.5467E-11 17821 20211116_3441_TMUAki_TMT10x_S_F3 127.51 98.787 1581500 2441300 0 2529600 1536100 1482700 1361900 1284500 1432900 1195000 1692100 1472400 2278300 106080 2558700 1466900 1570600 1392700 1313300 1463800 1170800 1624300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1581500 2441300 0 2529600 1536100 1482700 1361900 1284500 1432900 1195000 1692100 1472400 2278300 106080 2558700 1466900 1570600 1392700 1313300 1463800 1170800 1624300 1 1 0 1 1 1 1 1 1 1 1 240740000 118790000 121950000 1238 3281 1169 6423;6424;6425 7826;7827 7827 2 ALLAGQAALLQALMELAPASAPAR Oxidation (M) 2362.3043 0.30425087 2670 Q9BTY7 HGH1 Protein HGH1 homolog yes yes 0 0 1 0 By MS/MS 6.5 0.5 1 1 2 82.872 82.891 3 1.2493E-16 27243 20211116_3445_TMUAki_TMT10x_S_F6 123.12 113.36 590150 1089700 3636.3 1011700 814400 788460 803910 761220 762650 835620 830590 549490 1016500 52741 1034300 780670 816380 814720 777550 780080 813040 799140 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 590150 1089700 3636.3 1011700 814400 788460 803910 761220 762650 835620 830590 549490 1016500 52741 1034300 780670 816380 814720 777550 780080 813040 799140 2 2 1 2 2 2 2 2 2 2 2 207860000 0 207860000 1239 2670 1170 6426;6427 7828;7829 7828 2887 2 ALLAMYTNQAEQCRK Oxidation (M) 1811.8658 0.86583806 381 O76094;O76094-2 SRP72 Signal recognition particle subunit SRP72 yes no 0 0 1 1 By MS/MS By MS/MS 1 0 2 1 1 46.612 46.496 3 0.0026089 12592 20211116_3428_TMUAki_TMT10x_P_F1 65.043 53.429 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1240 381 1171 6428;6429 7830;7831 7830 293 2 ALLANALTSALR Unmodified 1212.719 0.71902112 1263 P57088 TMEM33 Transmembrane protein 33 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 2 4 73.43 73.388 2 2.909E-16 23044 20211116_3434_TMUAki_TMT10x_P_F6 199.33 169.52 23239000 42522000 292320 40074000 36316000 38788000 27208000 30314000 24736000 25793000 33688000 21640000 39668000 2331400 41036000 34607000 39403000 27998000 31114000 25591000 25377000 32221000 4 4 2 4 4 4 4 4 4 4 4 11963000 21329000 138950 20713000 16681000 27014000 15428000 15109000 12961000 12853000 16788000 11140000 19900000 1176000 21269000 15970000 26864000 15639000 15895000 13429000 12646000 16076000 2 2 1 2 2 2 2 2 2 2 2 11276000 21193000 153370 19361000 19636000 11774000 11780000 15206000 11775000 12939000 16901000 10500000 19768000 1155300 19767000 18637000 12540000 12359000 15219000 12161000 12731000 16145000 2 2 1 2 2 2 2 2 2 2 2 3713500000 1580200000 2133200000 1241 1263 1172 6430;6431;6432;6433;6434;6435 7832;7833;7834;7835;7836 7833 5 ALLAPLVAPEAGEAEPGSQER Unmodified 2104.08 0.08004782 2770 Q9H0B6;Q9H0B6-2 KLC2 Kinesin light chain 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 67.108 66.646 3 4.5559E-12 22896 20211116_3430_TMUAki_TMT10x_P_F3 113.47 104.88 1322800 2204900 0 2073000 1908100 1651700 1466800 1919300 1649300 1626100 2005500 1231400 2056900 86962 2117900 1816500 1714600 1516600 1929200 1682500 1600200 1923600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1322800 2204900 0 2073000 1908100 1651700 1466800 1919300 1649300 1626100 2005500 1231400 2056900 86962 2117900 1816500 1714600 1516600 1929200 1682500 1600200 1923600 1 1 0 1 1 1 1 1 1 1 1 286120000 0 286120000 1242 2770 1173 6436;6437;6438 7837;7838;7839 7837 3 ALLDQLMGTAR Unmodified 1187.6332 0.63324258 2898 Q9NQ29;Q9NQ29-2 LUC7L Putative RNA-binding protein Luc7-like 1 yes no 0 0 0 0 By MS/MS 2 0 1 1 75.284 75.177 2 4.4347E-07 25798 20211116_3429_TMUAki_TMT10x_P_F2 110.84 79.078 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1243 2898 1174 6439 7840 7840 1 ALLEAGALPNAPNSYGR Unmodified 1712.8846 0.8845829 1021 P42771;P42771-4;P42771-3 CDKN2A Cyclin-dependent kinase inhibitor 2A yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 58.002 58.63 3 0.00023104 19344 20211116_3446_TMUAki_TMT10x_S_F7 73.093 52.986 14985000 25656000 263720 25903000 19453000 21357000 16979000 22402000 20689000 22232000 21288000 13955000 23941000 1550700 26340000 18606000 22061000 17466000 22719000 20906000 21720000 20517000 4 4 4 4 4 4 4 4 4 4 4 4163400 6692600 121140 7533100 7052200 9591600 5916400 5839100 5704700 5999200 5575000 3877400 6248100 498530 7656400 6740800 9560000 6054100 6130900 5808200 5852500 5382000 1 1 1 1 1 1 1 1 1 1 1 10822000 18963000 142580 18370000 12401000 11766000 11062000 16563000 14984000 16233000 15713000 10077000 17693000 1052200 18684000 11865000 12501000 11412000 16588000 15098000 15868000 15135000 3 3 3 3 3 3 3 3 3 3 3 1117000000 692770000 424260000 1244 1021 1175 6440;6441 7841;7842;7843;7844 7842 4 ALLELQEYFGSLAA Unmodified 1523.7872 0.78716026 2722 Q9BY32;Q9BY32-2;Q9BY32-3 ITPA Inosine triphosphate pyrophosphatase yes no 0 0 0 0 By MS/MS 4 0 1 1 84.66 84.669 2 0.00010763 28615 20211116_3431_TMUAki_TMT10x_P_F4 96.847 71.63 258930 462940 15283 420140 297760 532260 317010 334460 391810 367900 418700 241210 431810 36255 433310 286910 530870 322870 351040 396280 357940 403070 1 1 1 1 1 1 1 1 1 1 1 258930 462940 15283 420140 297760 532260 317010 334460 391810 367900 418700 241210 431810 36255 433310 286910 530870 322870 351040 396280 357940 403070 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21107000 21107000 0 1245 2722 1176 6442 7845 7845 1 ALLELQLEPEELYQTFQR Unmodified 2219.1474 0.1473991 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 By MS/MS 4 0 1 1 80.665 80.674 3 0.0012171 26958 20211116_3431_TMUAki_TMT10x_P_F4 65.47 54.03 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1246 653 1177 6443 7846 7846 1 ALLEPELRPEDR Unmodified 1436.7623 0.7623425 601 P0DPD7;P0DPD8 yes no 0 0 0 1 By MS/MS 3 0 1 1 44.712 44.746 3 0.0013139 13836 20211116_3430_TMUAki_TMT10x_P_F3 71.176 56.756 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1247 601 1178 6444 7847 7847 1 ALLEVVQSGGK Unmodified 1099.6237 0.62372375 137 O14818;O14818-2;Q8TAA3;Q8TAA3-2;Q8TAA3-5 PSMA7;PSMA8 Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 44.507 45.004 2 1.8774E-14 19480 20211116_3435_TMUAki_TMT10x_P_F7 161.63 121.63 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1248 137 1179 6445;6446 7848;7849 7848 2 ALLFIPR Unmodified 828.52216 0.52215921 553 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 0 By MS/MS By MS/MS 4.71 1.62 2 2 9 8 13 11 4 2 22 29 58.217 58.237 1;2 0.0020133 20975 20211116_3429_TMUAki_TMT10x_P_F2 130.84 27.428 158160000 256350000 15283 262700000 183490000 246210000 147900000 183400000 142400000 164570000 187870000 147240000 239220000 10510000 267300000 174850000 250430000 151710000 189080000 146720000 161500000 179830000 25 25 3 25 25 25 25 25 25 25 25 83861000 133810000 741.03 130170000 105350000 178840000 76820000 93812000 79646000 87094000 99565000 78070000 124850000 5599800 133780000 100190000 177280000 79501000 99472000 81609000 85337000 95431000 11 11 1 11 11 11 11 11 11 11 11 74299000 122530000 14542 132530000 78136000 67368000 71077000 89590000 62756000 77475000 88307000 69169000 114370000 4910200 133520000 74659000 73149000 72208000 89605000 65114000 76166000 84396000 14 14 2 14 14 14 14 14 14 14 14 129670000000 68963000000 60704000000 1249 553 1180 6447;6448;6449;6450;6451;6452;6453;6454;6455;6456;6457;6458;6459;6460;6461;6462;6463;6464;6465;6466;6467;6468;6469;6470;6471;6472;6473;6474;6475;6476;6477;6478;6479;6480;6481;6482;6483;6484;6485;6486;6487;6488;6489;6490;6491;6492;6493;6494;6495;6496;6497 7850;7851;7852;7853;7854;7855;7856;7857;7858;7859;7860;7861;7862;7863;7864;7865;7866;7867;7868;7869;7870;7871;7872;7873;7874;7875;7876;7877;7878;7879;7880;7881;7882;7883;7884;7885;7886;7887;7888;7889;7890;7891;7892;7893;7894;7895 7851 46 ALLFVPR Unmodified 814.50651 0.50650915 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 By MS/MS By MS/MS 4.15 2.44 2 2 2 2 2 3 7 6 58.533 58.435 2 0.001158 19463 20211116_3430_TMUAki_TMT10x_P_F3 140.79 0 114520000 180920000 819320 184850000 153880000 182060000 125680000 152800000 137580000 142370000 150600000 106620000 168830000 9289200 188260000 146790000 184990000 129330000 156520000 139900000 139480000 144880000 14 14 1 14 14 14 14 14 14 14 14 56499000 88550000 0 88905000 79249000 120270000 63623000 74645000 68018000 68285000 72589000 52600000 82628000 4206900 91141000 75543000 119560000 65488000 78006000 69166000 66953000 69882000 6 6 0 6 6 6 6 6 6 6 6 58018000 92366000 819320 95945000 74631000 61798000 62058000 78152000 69559000 74089000 78013000 54021000 86201000 5082300 97116000 71246000 65429000 63838000 78513000 70736000 72526000 74994000 8 8 1 8 8 8 8 8 8 8 8 62828000000 30610000000 32217000000 1250 544 1181 6498;6499;6500;6501;6502;6503;6504;6505;6506;6507;6508;6509;6510 7896;7897;7898;7899;7900;7901;7902;7903;7904;7905;7906;7907;7908;7909;7910;7911 7898 16 ALLGYADNQCK Unmodified 1251.5918 0.59177169 2862 Q9HC38-2;Q9HC38 GLOD4 Glyoxalase domain-containing protein 4 yes no 0 0 0 0 By MS/MS 6 0 1 1 49.195 49.291 3 0.097866 13112 20211116_3434_TMUAki_TMT10x_P_F6 28.577 11.551 1331300 2008200 13530 2204200 2806900 2790800 1637000 1617500 1537500 1149900 1630500 1239700 1874600 143650 2243600 2662800 2780600 1718500 1689800 1571800 1142300 1570000 1 1 1 1 1 1 1 1 1 1 1 1331300 2008200 13530 2204200 2806900 2790800 1637000 1617500 1537500 1149900 1630500 1239700 1874600 143650 2243600 2662800 2780600 1718500 1689800 1571800 1142300 1570000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 203590000 203590000 0 1251 2862 1182 6511 7912 7912 1 ALLGYADNQCKLELQGVK Unmodified 2019.0459 0.04591092 2862 Q9HC38-2;Q9HC38 GLOD4 Glyoxalase domain-containing protein 4 yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 62.701 62.794 3 1.7323E-12 18784 20211116_3447_TMUAki_TMT10x_S_F8 137.19 115.35 14923000 27721000 0 18612000 25612000 31250000 19306000 32716000 29711000 28491000 25346000 13893000 25833000 1236400 19820000 24390000 31089000 20234000 33063000 29616000 28000000 24586000 3 3 0 3 3 3 3 3 3 3 3 5583400 9288600 0 6345400 8653300 17743000 9197000 10794000 10832000 9722900 8505100 5198200 8656300 438930 6851600 8306500 17217000 9351100 11293000 10866000 9540000 8276600 1 1 0 1 1 1 1 1 1 1 1 9339500 18433000 0 12267000 16959000 13507000 10109000 21922000 18879000 18768000 16841000 8695300 17177000 797480 12968000 16083000 13872000 10883000 21769000 18750000 18460000 16309000 2 2 0 2 2 2 2 2 2 2 2 1882600000 1170000000 712590000 1252 2862 1183 6512;6513;6514 7913;7914;7915;7916 7915 4 ALLIHEK Unmodified 822.49634 0.49633839 847 P29083 GTF2E1 General transcription factor IIE subunit 1 yes yes 0 0 0 0 By MS/MS 6 0 1 1 35.468 35.45 3 0.021081 7656 20211116_3434_TMUAki_TMT10x_P_F6 64.803 18.433 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1253 847 1184 6515 7917 7917 1 ALLLLCGEDD Unmodified 1117.5325 0.53252548 564 P08758 ANXA5 Annexin A5 yes yes 0 0 0 0 By MS/MS By MS/MS 2.75 1.09 1 2 1 1 3 79.366 79.329 2 0.0043548 26837 20211116_3442_TMUAki_TMT10x_S_F4 73.039 58.882 2222300 3686700 39299 3438400 2533700 2294600 2692700 2236400 2237100 2390300 2749900 2069400 3439200 225230 3508200 2435800 2406800 2708900 2281300 2314000 2328200 2636800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2222300 3686700 39299 3438400 2533700 2294600 2692700 2236400 2237100 2390300 2749900 2069400 3439200 225230 3508200 2435800 2406800 2708900 2281300 2314000 2328200 2636800 1 1 1 1 1 1 1 1 1 1 1 289590000 0 289590000 1254 564 1185 6516;6517;6518;6519 7918;7919;7920;7921 7921 4 ALLLLLVGGVDQSPR Unmodified 1549.9192 0.91917749 913 P33993;P33993-3 MCM7 DNA replication licensing factor MCM7 yes no 0 0 0 0 By matching By MS/MS 6 0 2 1 1 81.604 81.603 3 8.3616E-07 26748 20211116_3445_TMUAki_TMT10x_S_F6 111.12 98.539 542660 612450 0 541040 447610 430640 536750 526250 498030 440340 578790 505030 571220 13631 555340 429480 447670 538590 527650 511220 433600 555830 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 542660 612450 0 541040 447610 430640 536750 526250 498030 440340 578790 505030 571220 13631 555340 429480 447670 538590 527650 511220 433600 555830 1 1 0 1 1 1 1 1 1 1 1 275520000 97939000 177580000 1255 913 1186 6520;6521 7922 7922 1 ALLLTGDFSQAGNK Unmodified 1433.7514 0.75144346 2795 Q9H2W6 MRPL46 39S ribosomal protein L46, mitochondrial yes yes 0 0 0 0 By MS/MS 8 0 1 1 65.439 65.385 3 1.1858E-09 19850 20211116_3447_TMUAki_TMT10x_S_F8 108.72 86.723 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1256 2795 1187 6522 7923 7923 1 ALLNVVDNAR Unmodified 1083.6037 0.60365701 2136 Q8IV08 PLD3 Phospholipase D3 yes yes 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 52.252 52.555 2 6.4773E-05 14436 20211116_3434_TMUAki_TMT10x_P_F6 129.83 98.065 27297000 46140000 207700 51273000 40002000 41166000 29708000 40811000 38521000 35902000 41120000 25417000 43072000 2487300 51793000 38100000 42553000 30945000 41365000 38895000 35266000 39586000 5 5 2 5 5 5 5 5 5 5 5 10925000 17776000 178740 20673000 23451000 26612000 14290000 15756000 15672000 14354000 16414000 10172000 16597000 1136700 20974000 22260000 26501000 15017000 16525000 15909000 14077000 15811000 2 2 1 2 2 2 2 2 2 2 2 16373000 28364000 28959 30600000 16551000 14554000 15418000 25055000 22849000 21548000 24706000 15244000 26475000 1350600 30819000 15840000 16052000 15929000 24839000 22986000 21189000 23775000 3 3 1 3 3 3 3 3 3 3 3 1670200000 867410000 802800000 1257 2136 1188 6523;6524;6525;6526;6527;6528 7924;7925;7926;7927;7928 7925 5 ALLPHVLCK Unmodified 1049.6056 0.60557126 1874 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 50.967 50.75 3 0.00010726 15845 20211116_3429_TMUAki_TMT10x_P_F2 130.34 105.17 6984000 11321000 2568.6 12207000 14378000 14580000 8327700 12308000 11655000 10700000 11049000 6502500 10567000 643950 12426000 13632000 14655000 8866500 12581000 11689000 10517000 10678000 4 4 1 4 4 4 4 4 4 4 4 3896600 6408200 0 6760800 11371000 11670000 5544500 6862600 6443600 6041400 6012600 3627900 5980900 391810 6945600 10754000 11478000 5956500 7195500 6500600 5934200 5813500 2 2 0 2 2 2 2 2 2 2 2 3087400 4912700 2568.6 5446600 3007200 2909200 2783200 5445800 5210900 4659000 5036700 2874700 4586000 252140 5480800 2877600 3177200 2910000 5385300 5188800 4582700 4864100 2 2 1 2 2 2 2 2 2 2 2 2519300000 1326400000 1192900000 1258 1874 1189 6529;6530;6531;6532 7929;7930;7931;7932 7929 4 ALLQEMPLTALLR Unmodified 1467.8483 0.84832073 602 P10155;P10155-5;P10155-3;P10155-4 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes no 0 0 0 0 By MS/MS By matching 3 0 2 1 1 80.122 80.061 2 3.8106E-09 28275 20211116_3430_TMUAki_TMT10x_P_F3 134.13 97.109 4150700 6263600 42244 6613100 4847400 7998900 5601600 3193400 2552200 4051400 5109900 3865000 5845900 393250 6742500 4669400 7955300 5548100 3515000 2820600 3921400 4850200 1 1 1 1 1 1 1 1 1 1 1 4150700 6263600 42244 6613100 4847400 7998900 5601600 3193400 2552200 4051400 5109900 3865000 5845900 393250 6742500 4669400 7955300 5548100 3515000 2820600 3921400 4850200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1110100000 433720000 676340000 1259 602 1190 6533;6534 7933 7933 1 ALLQMVQQFGVDFEK Unmodified 1751.8916 0.89164211 1140 P50570;P50570-3;P50570-2;P50570-5;P50570-4 DNM2 Dynamin-2 yes no 0 0 0 0 By MS/MS 2 0 1 1 81.839 81.838 3 0.00012871 28475 20211116_3429_TMUAki_TMT10x_P_F2 79.771 65.514 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1260 1140 1191 6535 7934 7934 1 ALLQMVQQFGVDFEKR Oxidation (M) 1923.9877 0.98766776 1140 P50570;P50570-3;P50570-2;P50570-5;P50570-4 DNM2 Dynamin-2 yes no 0 0 1 1 By MS/MS 2 0 1 1 75.774 75.721 3 0.00011467 24734 20211116_3440_TMUAki_TMT10x_S_F2 79.337 65.933 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1261 1140 1192 6536 7935 7935 1504 1 ALLQSSASR Unmodified 931.50869 0.50869399 3217 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 0 0 By MS/MS 5 0 1 1 31.595 31.737 2 0.040662 6231 20211116_3444_TMUAki_TMT10x_S_F5 57.708 18.746 70827 109340 0 117660 71036 54429 72420 50668 63788 59200 99273 65941 102050 5165 118500 68101 59264 73119 51961 66530 57466 94667 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 70827 109340 0 117660 71036 54429 72420 50668 63788 59200 99273 65941 102050 5165 118500 68101 59264 73119 51961 66530 57466 94667 1 1 0 1 1 1 1 1 1 1 1 857400 0 857400 1262 3217 1193 6537 7936 7936 1 ALLQTHPEAQR Unmodified 1262.6731 0.67313356 2425 Q96CP2 FLYWCH2 FLYWCH family member 2 yes yes 0 0 0 0 By MS/MS 5 0 1 1 31.039 30.975 3 1.0866E-05 7106 20211116_3433_TMUAki_TMT10x_P_F5 105.17 52.004 312060 452890 7571.3 429470 524720 580310 359270 328000 384400 332690 448370 290620 422510 35907 442040 499420 576210 373850 346360 392230 324730 430550 1 1 1 1 1 1 1 1 1 1 1 312060 452890 7571.3 429470 524720 580310 359270 328000 384400 332690 448370 290620 422510 35907 442040 499420 576210 373850 346360 392230 324730 430550 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20934000 20934000 0 1263 2425 1194 6538 7937 7937 1 ALLTPVAIAAGR Unmodified 1151.7026 0.70264277 466 P00390;P00390-2;P00390-3;P00390-5;P00390-4 GSR Glutathione reductase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 60.824 60.551 2 2.6327E-16 20438 20211116_3430_TMUAki_TMT10x_P_F3 201.18 172.67 12473000 21512000 276930 20030000 16095000 19406000 14239000 16732000 13277000 14814000 17983000 11616000 20067000 1342900 20529000 15403000 19748000 14510000 17090000 13716000 14548000 17201000 3 3 3 3 3 3 3 3 3 3 3 4015700 6845700 79631 6322800 5923900 9534000 5505000 5270600 4360100 4409200 5323700 3739600 6385800 433870 6535200 5674400 9418800 5570400 5548200 4520000 4341800 5105700 1 1 1 1 1 1 1 1 1 1 1 8457500 14666000 197300 13708000 10171000 9871800 8734000 11461000 8916400 10405000 12659000 7876200 13681000 909060 13994000 9728400 10329000 8940100 11541000 9195700 10206000 12096000 2 2 2 2 2 2 2 2 2 2 2 1414100000 550360000 863780000 1264 466 1195 6539;6540;6541 7938;7939;7940 7938 3 ALLTTNQLPQPDVFPLFK Unmodified 2041.1248 0.12481317 3014 Q9NY61 AATF Protein AATF yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 80.189 80.146 3 1.0646E-17 29287 20211116_3441_TMUAki_TMT10x_S_F3 153.23 141.95 6502200 9441200 0 9852300 7655800 7656700 7137200 4816600 5264300 5707300 7352500 6054000 8811200 534050 9989100 7326300 7871700 7208700 5067200 5511600 5537400 7028100 2 2 0 2 2 2 2 2 2 2 2 2821600 3936400 0 4025200 2636800 4120000 2872200 2076400 2110600 2463600 3334800 2627200 3673400 228270 4101500 2534000 4145400 2877500 2225900 2223900 2390100 3179100 1 1 0 1 1 1 1 1 1 1 1 3680500 5504800 0 5827100 5019000 3536700 4265000 2740200 3153700 3243700 4017700 3426800 5137800 305790 5887600 4792300 3726300 4331200 2841300 3287700 3147300 3849000 1 1 0 1 1 1 1 1 1 1 1 2898000000 1803700000 1094300000 1265 3014 1196 6542;6543;6544 7941;7942 7942 2 ALLVTASQCQQPAENK Unmodified 1756.8778 0.87778296 1482 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 47.037 47.364 3 1.4095E-10 14798 20211116_3446_TMUAki_TMT10x_S_F7 124.16 112.47 29028000 46465000 500940 54062000 48236000 47849000 30752000 40988000 44415000 37918000 42947000 27031000 43385000 2761000 54522000 45837000 48974000 32531000 41928000 44534000 37160000 41475000 8 8 4 8 8 8 8 8 8 8 8 14371000 22087000 257590 25833000 35329000 36463000 18148000 20794000 22197000 18029000 20900000 13383000 20623000 1405900 26248000 33459000 36138000 19432000 21850000 22358000 17722000 20202000 4 4 3 4 4 4 4 4 4 4 4 14656000 24379000 243350 28229000 12907000 11386000 12604000 20194000 22218000 19890000 22047000 13648000 22762000 1355100 28274000 12379000 12836000 13098000 20078000 22176000 19438000 21273000 4 4 1 4 4 4 4 4 4 4 4 2327100000 1274300000 1052800000 1266 1482 1197 6545;6546;6547;6548 7943;7944;7945;7946;7947;7948;7949;7950 7949 8 ALMDEVVK Oxidation (M) 919.46847 0.46846866 473 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 1 0 By MS/MS By MS/MS 3.4 0.49 3 2 3 2 40.624 40.625 2 0.0037572 13461 20211116_3441_TMUAki_TMT10x_S_F3 107.66 66.719 3547400 5871500 17895 6106300 5389600 5178500 4426800 3821300 4194200 3813400 4912300 3302900 5479600 313820 6198900 5143200 5302300 4533500 3953500 4302600 3724700 4716500 4 4 3 4 4 4 4 4 4 4 4 1498300 2252300 5201.9 2475400 2961700 3089300 1827300 1538200 1700500 1533800 2001200 1394900 2102400 126800 2518700 2810100 3074500 1908900 1642100 1746200 1498200 1921100 2 2 1 2 2 2 2 2 2 2 2 2049100 3619300 12693 3630900 2427900 2089200 2599500 2283100 2493700 2279600 2911100 1908000 3377200 187020 3680200 2333100 2227800 2624500 2311400 2556400 2226500 2795300 2 2 2 2 2 2 2 2 2 2 2 457860000 128660000 329200000 1267 473 1198 6549;6550;6551;6552;6553 7951;7952;7953;7954 7953 366 4 ALMDEVVK Unmodified 903.47355 0.47355404 473 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 53.77 53.738 2 0.00041897 15076 20211116_3444_TMUAki_TMT10x_S_F5 143.85 99.716 39878000 60041000 242000 76408000 66653000 47791000 43367000 30665000 28135000 31590000 49275000 37131000 56086000 3785100 76365000 63331000 50067000 44735000 32070000 30039000 30814000 46879000 5 5 3 5 5 5 5 5 5 5 5 19195000 27523000 81839 35568000 46850000 33317000 24132000 14313000 13361000 14635000 22597000 17873000 25712000 1995800 35683000 44352000 33653000 25332000 15521000 14392000 14280000 21513000 2 2 1 2 2 2 2 2 2 2 2 20683000 32518000 160160 40840000 19804000 14474000 19236000 16352000 14774000 16955000 26678000 19259000 30374000 1789300 40682000 18980000 16414000 19403000 16549000 15647000 16535000 25366000 3 3 2 3 3 3 3 3 3 3 3 2167000000 1055100000 1111900000 1268 473 1198 6554;6555;6556;6557;6558;6559 7955;7956;7957;7958;7959;7960 7960 6 ALMGLYHGQVLCK Oxidation (M) 1504.753 0.75304014 992 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 1 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 49.78 49.547 3 0.011458 14123 20211116_3440_TMUAki_TMT10x_S_F2 60.305 39.352 4664200 7182800 0 8330200 6487400 7349600 5066900 5771100 5883200 4854300 6170500 4342500 6706600 381320 8402500 6182700 7512300 5239100 5919900 5959600 4778700 5943500 2 2 0 2 2 2 2 2 2 2 2 2171600 3366700 0 3728200 4036900 5455100 2683000 3120900 3327100 2672200 2980400 2021800 3142800 183880 3803700 3835300 5398300 2812200 3277500 3344200 2628300 2885800 1 1 0 1 1 1 1 1 1 1 1 2492500 3816200 0 4602000 2450600 1894500 2383900 2650200 2556200 2182100 3190100 2320700 3563800 197440 4598800 2347500 2114000 2426900 2642400 2615400 2150400 3057700 1 1 0 1 1 1 1 1 1 1 1 568900000 437430000 131470000 1269 992 1199 6560;6561;6562;6563 7961;7962 7962 1274 2 ALMGLYHGQVLCK Unmodified 1488.7581 0.75812552 992 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 By MS/MS 3 0 1 1 56.4 56.006 3 0.011539 19582 20211116_3441_TMUAki_TMT10x_S_F3 60.255 39.874 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1270 992 1199 6564 7963 7963 1 ALMLQGVDLLADAVAVTMGPK 2 Oxidation (M) 2144.1221 0.12211233 613 P10809;P10809-2 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 2 0 By MS/MS By MS/MS 5.83 2.32 2 1 1 2 2 5 5 10 8 80.945 80.951 2;3;4 1.2658E-26 26771 20211116_3436_TMUAki_TMT10x_P_F8 171.68 153.31 95251000 164790000 377210 131050000 106040000 192490000 129330000 188100000 223150000 192670000 152740000 88685000 153640000 6351500 136990000 102240000 192210000 132870000 191610000 220410000 187980000 149530000 19 19 9 19 19 19 19 19 19 19 19 49937000 84855000 330810 68672000 41292000 108630000 55179000 100430000 110460000 99901000 78221000 46495000 79118000 3829500 71797000 39937000 108020000 56956000 102510000 108810000 97590000 76455000 11 11 6 11 11 11 11 11 11 11 11 45314000 79936000 46402 62374000 64746000 83859000 74149000 87675000 112690000 92766000 74522000 42190000 74523000 2522100 65193000 62298000 84190000 75914000 89102000 111600000 90390000 73070000 8 8 3 8 8 8 8 8 8 8 8 57131000000 33213000000 23918000000 1271 613 1200 6565;6566;6567;6568;6569;6570;6571;6572;6573;6574;6575;6576;6577;6578;6579;6580;6581;6582 7964;7965;7966;7967;7968;7969;7970;7971;7972;7973;7974;7975;7976;7977;7978;7979;7980;7981;7982 7974 595;596 19 ALMLQGVDLLADAVAVTMGPK Oxidation (M) 2128.1272 0.12719771 613 P10809;P10809-2 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 4.67 2.71 3 4 1 3 4 3 9 9 82.746 82.748 3;4 2.2608E-19 28856 20211116_3429_TMUAki_TMT10x_P_F2 149.36 131.22 73958000 121970000 1244600 107600000 79392000 107230000 92532000 54623000 49996000 75316000 87057000 68870000 113760000 5476800 110770000 76524000 107750000 91856000 58811000 54039000 72705000 82834000 23 23 17 23 23 22 23 23 23 23 23 40670000 66350000 642020 62985000 35617000 74862000 48146000 31519000 30160000 43943000 47958000 37873000 61899000 2106100 64671000 34505000 74558000 47625000 34605000 32101000 42405000 45712000 12 12 9 12 12 12 12 12 12 12 12 33287000 55618000 602550 44610000 43775000 32363000 44386000 23105000 19836000 31373000 39099000 30998000 51856000 3370700 46104000 42019000 33195000 44231000 24206000 21938000 30300000 37121000 11 11 8 11 11 10 11 11 11 11 11 12617000000 5170800000 7445900000 1272 613 1200 6583;6584;6585;6586;6587;6588;6589;6590;6591;6592;6593;6594;6595;6596;6597;6598;6599;6600 7983;7984;7985;7986;7987;7988;7989;7990;7991;7992;7993;7994;7995;7996;7997;7998;7999;8000;8001;8002;8003 7987 595;596 21 ALMLQGVDLLADAVAVTMGPK Unmodified 2112.1323 0.13228309 613 P10809;P10809-2 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 0 0 By MS/MS 4 0 2 2 84.78 84.774 3 2.0386E-08 29035 20211116_3442_TMUAki_TMT10x_S_F4 100.92 85.497 1128100 1896900 40969 1834700 1457900 1133000 1402300 1003100 972790 1069000 1346400 1050700 1769800 136330 1865600 1399000 1194600 1412100 1028400 1021700 1041300 1287300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1128100 1896900 40969 1834700 1457900 1133000 1402300 1003100 972790 1069000 1346400 1050700 1769800 136330 1865600 1399000 1194600 1412100 1028400 1021700 1041300 1287300 2 2 2 2 2 2 2 2 2 2 2 11684000 0 11684000 1273 613 1200 6601;6602 8004;8005;8006 8005 3 ALMTVGKEPFPTIYVDSQK Oxidation (M) 2139.0922 0.092192411 244 O43776;O43776-2 NARS Asparagine--tRNA ligase, cytoplasmic yes no 0 0 1 1 By MS/MS 8 0 1 1 63.827 64.009 3 6.6413E-06 19804 20211116_3436_TMUAki_TMT10x_P_F8 85.087 74.748 7150900 10552000 0 13201000 8243700 12757000 7259100 6459500 7842500 7159900 8085100 6658000 9856000 574890 13274000 7877500 12881000 7432800 6906300 7961500 6963900 7791900 2 2 0 2 2 2 2 2 2 2 2 7150900 10552000 0 13201000 8243700 12757000 7259100 6459500 7842500 7159900 8085100 6658000 9856000 574890 13274000 7877500 12881000 7432800 6906300 7961500 6963900 7791900 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 603380000 603380000 0 1274 244 1201 6603 8007;8008 8007 194 2 ALMTVGKEPFPTIYVDSQKENER Unmodified 2651.3265 0.32650246 244 O43776;O43776-2 NARS Asparagine--tRNA ligase, cytoplasmic yes no 0 0 0 2 By MS/MS By matching 7.5 0.5 1 1 1 1 62.291 62.641 4 4.3407E-07 20425 20211116_3435_TMUAki_TMT10x_P_F7 86.987 73.929 2704200 4785000 0 3497600 4239900 6349200 5346300 2786500 2118400 2745800 3451400 2517800 4460100 242280 3701700 4093000 6212200 5265200 3011700 2343700 2683300 3288100 1 1 0 1 1 1 1 1 1 1 1 2704200 4785000 0 3497600 4239900 6349200 5346300 2786500 2118400 2745800 3451400 2517800 4460100 242280 3701700 4093000 6212200 5265200 3011700 2343700 2683300 3288100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1538300000 908990000 629260000 1275 244 1202 6604;6605 8009 8009 1 ALNAGYILNGLTVSIPGLER Unmodified 2070.1473 0.14733952 3339 Q9Y678 COPG1 Coatomer subunit gamma-1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 80.502 80.465 3 0.00043408 29408 20211116_3441_TMUAki_TMT10x_S_F3 66.702 47.627 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1276 3339 1203 6606 8010 8010 1 ALNALCDGLIDELNQALK Unmodified 1970.0143 0.014276441 865 P30084 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 0 0 0 0 By MS/MS 5.75 0.829 2 1 1 4 81.509 81.526 3 0.0040552 26447 20211116_3444_TMUAki_TMT10x_S_F5 59.512 30.879 698250 1160000 0 1053500 764410 698280 905590 555530 612880 586440 954320 650010 1082000 42996 1077000 735470 730070 902130 572950 648420 571470 910030 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 698250 1160000 0 1053500 764410 698280 905590 555530 612880 586440 954320 650010 1082000 42996 1077000 735470 730070 902130 572950 648420 571470 910030 1 1 0 1 1 1 1 1 1 1 1 294010000 0 294010000 1277 865 1204 6607;6608;6609;6610 8011;8012 8011 2 ALNHEIEELEK Unmodified 1323.667 0.66704513 423 O95347;O95347-2 SMC2 Structural maintenance of chromosomes protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 2.6 0.49 2 3 3 2 48.864 48.664 3 1.1428E-05 13767 20211116_3440_TMUAki_TMT10x_S_F2 103.43 80.9 2750400 4906500 119640 4865800 2762700 2656300 2574200 4686600 4038400 3726100 4784200 2561800 4578100 339700 4933800 2651600 2887900 2666300 4633800 4070800 3678700 4592100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2750400 4906500 119640 4865800 2762700 2656300 2574200 4686600 4038400 3726100 4784200 2561800 4578100 339700 4933800 2651600 2887900 2666300 4633800 4070800 3678700 4592100 1 1 1 1 1 1 1 1 1 1 1 309500000 188370000 121140000 1278 423 1205 6611;6612;6613;6614;6615 8013;8014;8015;8016 8015 4 ALNILQSTNMAFGK Oxidation (M) 1522.7814 0.78136338 990 P40937;P40937-2 RFC5 Replication factor C subunit 5 yes no 0 0 1 0 By MS/MS By MS/MS 3 0 3 1 2 69.324 69.054 2;3 1.1142E-06 24891 20211116_3441_TMUAki_TMT10x_S_F3 95.183 74.52 4999300 8550200 89408 8297300 6144800 11210000 6385000 7133600 6322000 6362700 7044200 4655500 7977300 513840 8526100 5903400 11149000 6462100 7435600 6459900 6245900 6772900 2 2 2 2 2 2 2 2 2 2 2 4999300 8550200 89408 8297300 6144800 11210000 6385000 7133600 6322000 6362700 7044200 4655500 7977300 513840 8526100 5903400 11149000 6462100 7435600 6459900 6245900 6772900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 439300000 439300000 0 1279 990 1206 6616;6617;6618 8017;8018;8019;8020 8019 1271 4 ALNKGDANSEVTVYYQSGTR Unmodified 2172.0447 0.044724946 251 O43847;O43847-2 NRD1 Nardilysin yes no 0 0 0 1 By MS/MS By MS/MS 5.86 0.833 3 2 2 4 3 44.483 44.737 3 4.9968E-64 11305 20211116_3434_TMUAki_TMT10x_P_F6 258.5 223.17 16235000 26629000 168220 27272000 21345000 23085000 15590000 16761000 16539000 15370000 19443000 15117000 24850000 1520500 27714000 20328000 23634000 16144000 17319000 16887000 15069000 18666000 9 9 4 9 9 9 9 9 9 9 9 8762300 14086000 97550 14152000 13719000 16238000 9073500 8384500 8332200 7978900 9772400 8159300 13144000 886790 14464000 13044000 16237000 9423600 8908900 8560100 7809300 9382500 3 3 3 3 3 3 3 3 3 3 3 7472200 12543000 70671 13121000 7625900 6847200 6517000 8377000 8206700 7391400 9670800 6957400 11706000 633660 13251000 7284900 7396800 6720700 8410400 8326900 7259400 9283800 6 6 1 6 6 6 6 6 6 6 6 1940700000 1130600000 810060000 1280 251 1207 6619;6620;6621;6622;6623;6624;6625 8021;8022;8023;8024;8025;8026;8027;8028;8029;8030 8022 10 ALNLFQGSVEDTTGSQSLAALLNK Unmodified 2476.2809 0.28093247 1027 P43246;P43246-2 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.2 2 1 1 2 3 3 69.905 69.9 3 3.6642E-60 26454 20211116_3436_TMUAki_TMT10x_P_F8 226.72 204.34 10665000 16798000 99505 16151000 9750200 16215000 12360000 9240900 8373100 10484000 11963000 9930700 15672000 960290 16524000 9420400 16358000 12278000 9784600 8820000 10188000 11429000 4 4 3 4 4 4 4 4 4 4 4 7512700 11743000 39588 11136000 6397800 13346000 8653300 7160300 6389300 7853200 8595900 6995300 10955000 640310 11436000 6193300 13321000 8589400 7613000 6677400 7641300 8223900 2 2 1 2 2 2 2 2 2 2 2 3152100 5055900 59917 5015500 3352500 2869000 3706900 2080600 1983800 2630400 3366600 2935400 4717500 319980 5087400 3227000 3037400 3688200 2171600 2142700 2546400 3204800 2 2 2 2 2 2 2 2 2 2 2 7491400000 4658800000 2832600000 1281 1027 1208 6626;6627;6628;6629;6630;6631 8031;8032;8033;8034 8032 4 ALNQLSVPLGQLREEVLSLR Unmodified 2234.2747 0.2746653 1733 Q14746;Q14746-2 COG2 Conserved oligomeric Golgi complex subunit 2 yes no 0 0 0 1 By MS/MS 2 0 1 1 78.687 78.663 3 5.2586E-05 25924 20211116_3440_TMUAki_TMT10x_S_F2 76.301 49.572 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1282 1733 1209 6632 8035 8035 1 ALNRPPTYPTK Unmodified 1256.6877 0.68772099 1231 P55010 EIF5 Eukaryotic translation initiation factor 5 yes yes 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 35.032 34.807 3 1.1339E-05 9433 20211116_3429_TMUAki_TMT10x_P_F2 110.15 85.312 1861300 2989000 26047 3318700 6845900 5035000 3146500 2681100 3103300 2447000 3275600 1733200 2790300 248400 3388000 6472800 4970600 3383800 2837700 3165100 2399600 3154500 2 2 2 2 2 2 2 2 2 2 2 1861300 2989000 26047 3318700 6845900 5035000 3146500 2681100 3103300 2447000 3275600 1733200 2790300 248400 3388000 6472800 4970600 3383800 2837700 3165100 2399600 3154500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 218140000 218140000 0 1283 1231 1210 6633;6634 8036;8037;8038 8038 3 ALNSYFEPPVEESALER Unmodified 1949.9371 0.93707198 436 O95551;O95551-2 TDP2 Tyrosyl-DNA phosphodiesterase 2 yes no 0 0 0 0 By MS/MS 3 0 1 1 69.192 68.921 3 0.069519 23811 20211116_3430_TMUAki_TMT10x_P_F3 31.297 9.4565 2842000 4484700 0 4349400 3267100 5730400 3318800 3558100 3447900 3237700 3499600 2646100 4184200 232050 4467300 3133300 5703800 3367700 3717700 3503800 3175300 3374400 1 1 0 1 1 1 1 1 1 1 1 2842000 4484700 0 4349400 3267100 5730400 3318800 3558100 3447900 3237700 3499600 2646100 4184200 232050 4467300 3133300 5703800 3367700 3717700 3503800 3175300 3374400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 351500000 351500000 0 1284 436 1211 6635 8039 8039 1 ALNVEPDGTGLTCSLAPNIISQL Unmodified 2382.2101 0.21007572 860 P30044;P30044-2;P30044-3;P30044-4 PRDX5 Peroxiredoxin-5, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4.88 1.93 1 3 3 3 5 5 4 2 15 11 81.707 81.707 2;3 1.3847E-36 27633 20211116_3433_TMUAki_TMT10x_P_F5 195.43 174.59 33875000 56665000 176500 53810000 39272000 50109000 42366000 31230000 30784000 34875000 44012000 31539000 52864000 1868000 55042000 37722000 50851000 42453000 32815000 32294000 33911000 42048000 35 35 12 35 35 35 35 35 35 35 35 18764000 31369000 80013 30051000 18567000 32094000 21065000 17418000 17539000 18777000 24073000 17471000 29266000 1060800 30781000 17861000 32240000 21128000 18491000 18229000 18283000 23020000 19 19 8 19 19 19 19 19 19 19 19 15111000 25296000 96487 23759000 20706000 18014000 21300000 13813000 13246000 16098000 19939000 14069000 23598000 807210 24261000 19861000 18612000 21326000 14324000 14065000 15628000 19027000 16 16 4 16 16 16 16 16 16 16 16 49899000000 21889000000 28010000000 1285 860 1212 6636;6637;6638;6639;6640;6641;6642;6643;6644;6645;6646;6647;6648;6649;6650;6651;6652;6653;6654;6655;6656;6657;6658;6659;6660;6661 8040;8041;8042;8043;8044;8045;8046;8047;8048;8049;8050;8051;8052;8053;8054;8055;8056;8057;8058;8059;8060;8061;8062;8063;8064;8065;8066;8067;8068;8069;8070;8071;8072;8073;8074;8075 8050 36 ALPASETPK Unmodified 912.49165 0.49164694 377 O76021;O76021-2 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 0 0 0 0 By MS/MS By matching 4.5 0.5 1 1 1 1 35.225 35.326 2 0.000406 8614 20211116_3431_TMUAki_TMT10x_P_F4 124.23 72.376 796980 1303600 0 1257800 1495600 1602900 962920 811710 904050 780110 1037600 742020 1216200 70250 1291600 1420300 1593900 1002800 864280 927030 763200 996810 1 1 0 1 1 1 1 1 1 1 1 796980 1303600 0 1257800 1495600 1602900 962920 811710 904050 780110 1037600 742020 1216200 70250 1291600 1420300 1593900 1002800 864280 927030 763200 996810 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 46791000 40021000 6769900 1286 377 1213 6662;6663 8076 8076 1 ALPAVQQNNLDEDLIR Unmodified 1807.9428 0.94282606 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.62 0.857 1 2 4 1 4 4 61.642 61.525 2;3 2.9089E-80 19115 20211116_3431_TMUAki_TMT10x_P_F4 325.93 292.06 32665000 53960000 837910 57181000 38696000 47205000 35049000 43359000 40854000 40733000 45482000 30421000 50362000 3537800 57958000 37060000 48618000 35922000 44199000 41472000 39890000 43732000 12 12 10 12 12 12 12 12 12 12 12 10553000 16103000 160030 17846000 14267000 23958000 13148000 13512000 12915000 12218000 14612000 9827000 15032000 1040300 18174000 13659000 23795000 13388000 14226000 13209000 11986000 14043000 4 4 2 4 4 4 4 4 4 4 4 22112000 37857000 677880 39336000 24429000 23247000 21901000 29847000 27939000 28515000 30870000 20594000 35330000 2497500 39784000 23401000 24823000 22534000 29973000 28263000 27904000 29689000 8 8 8 8 8 8 8 8 8 8 8 7756300000 4292600000 3463700000 1287 769 1214 6664;6665;6666;6667;6668;6669;6670;6671 8077;8078;8079;8080;8081;8082;8083;8084;8085;8086;8087;8088 8080 12 ALPAVQQNNLDEDLIRK Unmodified 1936.0378 0.037789075 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 1 By MS/MS By MS/MS 4.75 0.968 1 2 3 2 5 3 56.908 56.975 3;4 1.3481E-69 16640 20211116_3445_TMUAki_TMT10x_S_F6 300.74 269.74 67562000 108840000 695370 126570000 101080000 120120000 77053000 90369000 91034000 84307000 91729000 62908000 101630000 6307500 127780000 96331000 122100000 79848000 93201000 92024000 82588000 88466000 15 15 11 15 15 15 15 15 15 15 15 42735000 67674000 420860 78643000 80793000 100720000 59064000 57294000 58635000 52248000 56325000 39791000 63188000 4189000 79784000 76929000 100270000 61034000 60294000 59588000 51236000 54406000 9 9 6 9 9 9 9 9 9 9 9 24827000 41167000 274510 47931000 20287000 19401000 17989000 33074000 32399000 32059000 35404000 23117000 38439000 2118500 47993000 19402000 21831000 18813000 32907000 32436000 31352000 34060000 6 6 5 6 6 6 6 6 6 6 6 9385500000 5301300000 4084200000 1288 769 1215 6672;6673;6674;6675;6676;6677;6678;6679 8089;8090;8091;8092;8093;8094;8095;8096;8097;8098;8099;8100;8101;8102;8103 8102 15 ALPEFFNGK Unmodified 1021.5233 0.52328142 2379;2263 Q8TAQ2;Q8TAQ2-2;Q8TAQ2-3;Q92922 SMARCC2;SMARCC1 SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1 no no 0 0 0 0 By MS/MS 7 0 1 1 62.841 63.513 2 0.00016349 20799 20211116_3435_TMUAki_TMT10x_P_F7 136.8 70.539 7665000 12253000 133610 14043000 15455000 20798000 12131000 13476000 12988000 11639000 12817000 7137900 11440000 869110 14301000 14744000 20607000 12505000 14016000 13170000 11443000 12369000 1 1 1 1 1 1 1 1 1 1 1 7665000 12253000 133610 14043000 15455000 20798000 12131000 13476000 12988000 11639000 12817000 7137900 11440000 869110 14301000 14744000 20607000 12505000 14016000 13170000 11443000 12369000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 714910000 714910000 0 1289 2263;2379 1216 6680 8104 8104 1 ALPESLGQHALR Unmodified 1290.7044 0.70443369 382 O94760 DDAH1 N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.2 1.17 2 1 1 1 4 1 38.544 38.715 3 2.241E-15 8748 20211116_3434_TMUAki_TMT10x_P_F6 184.03 152.54 2942600 4537000 40642 4975800 5455200 5090000 3459800 3728000 3655800 3055300 4015400 2740200 4235100 317030 5046900 5183000 5147700 3619800 3839000 3723300 3011700 3862400 6 6 6 6 6 6 6 6 6 6 6 1886100 2879400 29805 3127700 4433200 4203700 2556600 2381300 2324000 1991000 2527000 1756300 2687800 219820 3189400 4205400 4175100 2684200 2501400 2381600 1960600 2431400 4 4 4 4 4 4 4 4 4 4 4 1056600 1657500 10837 1848100 1022000 886270 903170 1346700 1331800 1064300 1488400 983850 1547400 97213 1857500 977640 972540 935610 1337500 1341700 1051100 1431000 2 2 2 2 2 2 2 2 2 2 2 550870000 490540000 60333000 1290 382 1217 6681;6682;6683;6684;6685 8105;8106;8107;8108;8109;8110 8106 6 ALPFWNEEIVPQIK Unmodified 1682.9032 0.90319307 722 P18669;P15259;Q8N0Y7 PGAM1;PGAM2;PGAM4 Phosphoglycerate mutase 1;Phosphoglycerate mutase 2;Probable phosphoglycerate mutase 4 yes no 0 0 0 0 By MS/MS By MS/MS 6.27 2.15 3 2 1 6 4 8 17 27 14 67.862 67.875 2;3 1.4108E-30 25464 20211116_3447_TMUAki_TMT10x_S_F8 218.11 189.59 432520000 670130000 3173100 696400000 460540000 424050000 534020000 169180000 128050000 237200000 434680000 402720000 625400000 31854000 704520000 443410000 443060000 525270000 186910000 158910000 228860000 409820000 52 52 27 52 52 52 52 52 52 52 52 175470000 268360000 1569700 276810000 168490000 228490000 224830000 70411000 56188000 99328000 171100000 163380000 250440000 14592000 281070000 162980000 232200000 219890000 80433000 68619000 95817000 161490000 30 30 14 30 30 30 30 30 30 30 30 257050000 401770000 1603400 419590000 292050000 195550000 309190000 98771000 71862000 137870000 263580000 239340000 374960000 17263000 423450000 280430000 210860000 305380000 106480000 90295000 133040000 248330000 22 22 13 22 22 22 22 22 22 22 22 68292000000 36094000000 32198000000 1291 722 1218 6686;6687;6688;6689;6690;6691;6692;6693;6694;6695;6696;6697;6698;6699;6700;6701;6702;6703;6704;6705;6706;6707;6708;6709;6710;6711;6712;6713;6714;6715;6716;6717;6718;6719;6720;6721;6722;6723;6724;6725;6726 8111;8112;8113;8114;8115;8116;8117;8118;8119;8120;8121;8122;8123;8124;8125;8126;8127;8128;8129;8130;8131;8132;8133;8134;8135;8136;8137;8138;8139;8140;8141;8142;8143;8144;8145;8146;8147;8148;8149;8150;8151;8152;8153;8154;8155;8156;8157;8158;8159;8160;8161;8162;8163;8164;8165;8166;8167;8168 8152 58 ALPGQLKPFETLLSQNQGGK Unmodified 2125.1532 0.15315318 571 P09211 GSTP1 Glutathione S-transferase P yes yes 0 0 0 1 By MS/MS By MS/MS 3.22 1.54 4 7 32 7 4 34 20 74.038 73.953 2;3;4;5 1.1651E-69 24753 20211116_3429_TMUAki_TMT10x_P_F2 289.89 267.66 913930000 1490900000 10622000 1437900000 1032000000 1364500000 1120200000 800310000 823890000 893960000 1077000000 851010000 1391000000 81703000 1469500000 992150000 1381900000 1122500000 844970000 860120000 869230000 1031100000 98 98 62 98 97 98 97 98 98 98 98 531050000 837530000 6134900 802420000 506610000 873940000 602400000 446310000 461840000 513850000 600540000 494490000 781370000 45245000 822150000 488380000 876290000 601680000 477380000 480920000 499070000 575020000 65 65 41 65 65 65 65 65 65 65 65 382880000 653370000 4487100 635470000 525360000 490540000 517810000 353990000 362050000 380110000 476420000 356520000 609600000 36459000 647380000 503770000 505600000 520790000 367590000 379200000 370160000 456040000 33 33 21 33 32 33 32 33 33 33 33 253810000000 122700000000 131110000000 1292 571 1219 6727;6728;6729;6730;6731;6732;6733;6734;6735;6736;6737;6738;6739;6740;6741;6742;6743;6744;6745;6746;6747;6748;6749;6750;6751;6752;6753;6754;6755;6756;6757;6758;6759;6760;6761;6762;6763;6764;6765;6766;6767;6768;6769;6770;6771;6772;6773;6774;6775;6776;6777;6778;6779;6780 8169;8170;8171;8172;8173;8174;8175;8176;8177;8178;8179;8180;8181;8182;8183;8184;8185;8186;8187;8188;8189;8190;8191;8192;8193;8194;8195;8196;8197;8198;8199;8200;8201;8202;8203;8204;8205;8206;8207;8208;8209;8210;8211;8212;8213;8214;8215;8216;8217;8218;8219;8220;8221;8222;8223;8224;8225;8226;8227;8228;8229;8230;8231;8232;8233;8234;8235;8236;8237;8238;8239;8240;8241;8242;8243;8244;8245;8246;8247;8248;8249;8250;8251;8252;8253;8254;8255;8256;8257;8258;8259;8260;8261;8262;8263;8264;8265;8266;8267;8268;8269 8176 101 ALPLIVGAQLIHADK Unmodified 1557.9243 0.92426287 1930 Q5SSJ5;Q5SSJ5-5 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 74.124 73.949 3 2.3052E-25 25189 20211116_3429_TMUAki_TMT10x_P_F2 198.78 173.61 15047000 23223000 174820 25497000 15963000 20725000 17203000 12827000 13586000 14320000 17385000 14011000 21678000 1315300 25779000 15341000 21230000 17273000 13485000 14115000 13924000 16653000 5 5 3 5 5 5 5 5 5 5 5 7428100 10850000 51196 11311000 7190000 12399000 8058200 5947100 6233100 6578500 7806200 6916700 10126000 657610 11523000 6918900 12419000 8071900 6391200 6476800 6398900 7481600 2 2 1 2 2 2 2 2 2 2 2 7619100 12372000 123620 14186000 8773100 8325700 9144700 6879600 7353400 7741700 9579000 7094200 11552000 657670 14256000 8422100 8810700 9201000 7093500 7638200 7525400 9171600 3 3 2 3 3 3 3 3 3 3 3 2403900000 1251700000 1152200000 1293 1930 1221 6781;6782;6783;6784 8270;8271;8272;8273;8274;8275 8271 6 ALPLIVGAQLIHADKLGEK Unmodified 1985.1673 0.16734668 1930 Q5SSJ5;Q5SSJ5-5 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 74.691 74.556 4 2.5721E-07 24129 20211116_3440_TMUAki_TMT10x_S_F2 101.64 94.909 14374000 25194000 56382 18458000 17288000 31028000 20072000 26981000 24381000 23803000 22569000 13383000 23484000 1166400 19494000 16642000 30743000 20347000 27542000 24550000 23378000 21828000 6 6 3 6 6 6 6 6 6 6 6 6269600 10283000 2879.6 7843500 6673000 16881000 8816800 10750000 9705400 9221300 8915000 5836800 9586000 420360 8309100 6445500 16502000 8858700 11194000 9806700 9069000 8624400 3 3 1 3 3 3 3 3 3 3 3 8104100 14911000 53502 10614000 10615000 14147000 11255000 16231000 14675000 14582000 13654000 7546100 13898000 746050 11184000 10196000 14241000 11489000 16348000 14744000 14309000 13204000 3 3 2 3 3 3 3 3 3 3 3 2416600000 1373700000 1043000000 1294 1930 1222 6785;6786;6787;6788 8276;8277;8278;8279;8280;8281 8279 6 ALPLPHFDTINLPEK Unmodified 1703.9247 0.9246568 3175 Q9ULW0;Q9ULW0-2 TPX2 Targeting protein for Xklp2 yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 71.336 71.57 3 1.4565E-19 24223 20211116_3435_TMUAki_TMT10x_P_F7 169.19 148.24 19515000 31969000 256890 30194000 19577000 32670000 21264000 17180000 20028000 20538000 23272000 18173000 29824000 1858200 30965000 18830000 32781000 21442000 18350000 20544000 19920000 22350000 5 5 5 5 5 5 5 5 5 5 5 15638000 25099000 203990 23662000 15157000 28574000 16641000 13637000 16210000 16364000 18221000 14562000 23415000 1479900 24314000 14583000 28471000 16789000 14700000 16581000 15869000 17515000 4 4 4 4 4 4 4 4 4 4 4 3877200 6870100 52899 6532300 4420400 4095800 4622200 3543300 3817800 4174500 5051000 3610400 6409300 378350 6651500 4246800 4310400 4653000 3649400 3962900 4051000 4834400 1 1 1 1 1 1 1 1 1 1 1 2005800000 1116500000 889240000 1295 3175 1223 6789;6790;6791 8282;8283;8284;8285;8286 8283 5 ALPQTPRPR Unmodified 1034.5985 0.59851205 3216 Q9UQ35;Q9UQ35-2 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 29.652 29.403 3 0.0045326 7271 20211116_3429_TMUAki_TMT10x_P_F2 72.478 37.378 1423000 2283000 33602 1934800 1561100 2040500 1578300 939280 1067600 1063700 1498000 1325200 2129000 151230 2000000 1499400 2047500 1584200 1014300 1123800 1033700 1431700 2 2 2 2 2 2 2 2 2 2 2 1104400 1759900 26343 1482600 1210100 1744400 1200400 716820 825610 831910 1138900 1028500 1641200 117590 1536000 1161600 1737800 1206600 784120 867440 807750 1089000 1 1 1 1 1 1 1 1 1 1 1 318650 523070 7259.2 452200 351090 296140 377820 222460 242020 231770 359080 296750 487820 33638 463990 337750 309660 377640 230180 256310 225980 342770 1 1 1 1 1 1 1 1 1 1 1 19568000 14361000 5206800 1296 3216 1224 6792;6793 8287;8288 8287 2 ALPSEELNR Unmodified 1027.5298 0.52982336 1511 Q04637;Q04637-3;Q04637-8;Q04637-5;Q04637-4;Q04637-9;Q04637-6;Q04637-7 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 36.089 36.02 2 0.00029905 10177 20211116_3429_TMUAki_TMT10x_P_F2 129.77 69.654 976500 1702700 43.973 1786200 2487100 1879100 1237600 1096000 1170500 896770 1424500 909200 1589100 99499 1817700 2353200 1891000 1318600 1147900 1202800 884040 1366300 2 2 1 2 2 2 2 2 2 2 2 792620 1393400 0 1451700 2309800 1739800 1031000 908900 1004200 742060 1174200 737980 1300400 84305 1481200 2182500 1735900 1111800 961050 1028800 731610 1127400 1 1 0 1 1 1 1 1 1 1 1 183890 309340 43.973 334470 177260 139300 206680 187130 166360 154710 250320 171220 288740 15194 336520 170710 155020 206860 186880 173980 152430 238870 1 1 1 1 1 1 1 1 1 1 1 52387000 44757000 7630500 1297 1511 1225 6794;6795 8289;8290 8289 2 ALQALQQEHKAEIITVSDGR Unmodified 2206.1706 0.17059416 2634 Q9BRG1 VPS25 Vacuolar protein-sorting-associated protein 25 yes yes 0 0 0 1 By MS/MS 5.5 0.5 1 1 2 49.459 49.624 4 2.448E-09 13334 20211116_3444_TMUAki_TMT10x_S_F5 117.38 91.232 995620 1885400 0 2159200 1138400 885930 804400 1580100 1596400 1229700 1591000 927010 1760300 82542 2164300 1083000 996660 857920 1561000 1589200 1215400 1535000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 995620 1885400 0 2159200 1138400 885930 804400 1580100 1596400 1229700 1591000 927010 1760300 82542 2164300 1083000 996660 857920 1561000 1589200 1215400 1535000 1 1 0 1 1 1 1 1 1 1 1 1218800000 0 1218800000 1298 2634 1226 6796;6797 8291 8291 1 ALQAQEIECR Unmodified 1216.587 0.58702067 2222 Q8NBJ5 COLGALT1 Procollagen galactosyltransferase 1 yes yes 0 0 0 0 By MS/MS 2 0 1 1 33.825 33.907 2 0.0050855 7761 20211116_3440_TMUAki_TMT10x_S_F2 70.552 57.174 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1299 2222 1227 6798 8292 8292 1 ALQASALK Unmodified 800.4756 0.47560295 482 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 1 3 39.8 40.247 2 0.00043647 11555 20211116_3446_TMUAki_TMT10x_S_F7 140.5 36.938 1800800 3288500 14679 2898300 2176700 1624800 1520700 2331500 2695100 1940900 2820700 1676800 3067000 168100 2965200 2071500 1749700 1613200 2323200 2694800 1911700 2717100 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1800800 3288500 14679 2898300 2176700 1624800 1520700 2331500 2695100 1940900 2820700 1676800 3067000 168100 2965200 2071500 1749700 1613200 2323200 2694800 1911700 2717100 3 3 2 3 3 3 3 3 3 3 3 113280000 0 113280000 1300 482 1228 6799;6800;6801;6802 8293;8294;8295;8296;8297 8295 5 ALQATVGNSYK Unmodified 1150.5982 0.59823728 622 P11279;P11279-2 LAMP1 Lysosome-associated membrane glycoprotein 1 yes no 0 0 0 0 By MS/MS 7 0 1 1 40.341 40.974 3 0.070469 12135 20211116_3446_TMUAki_TMT10x_S_F7 42.976 23.363 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1301 622 1229 6803 8298 8298 1 ALQDAFSGLFWQPS Unmodified 1565.7514 0.75144346 1166 P51948;P51948-2 MNAT1 CDK-activating kinase assembly factor MAT1 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.866 1 3 2 2 83.344 83.351 2;3 8.0221E-09 27758 20211116_3436_TMUAki_TMT10x_P_F8 123.51 100.98 783730 1299600 4500.6 1235200 961810 1140600 1001600 766650 775810 879230 1007600 729750 1212400 70285 1263200 923410 1159400 1006900 801720 807360 854070 964800 4 4 3 4 4 4 4 4 4 4 4 391410 589690 2281.4 573910 389820 624100 486060 288370 291480 366590 427050 364450 550190 34554 587350 376330 625150 481980 312480 309850 354810 407760 2 2 2 2 2 2 2 2 2 2 2 392320 709900 2219.2 661260 572000 516500 515490 478280 484330 512640 580530 365300 662230 35731 675860 547080 534240 524870 489240 497500 499260 557040 2 2 1 2 2 2 2 2 2 2 2 138070000 91056000 47011000 1302 1166 1230 6804;6805;6806;6807 8299;8300;8301;8302 8299 4 ALQDLENAASGDAAVHQR Unmodified 1864.9028 0.90275216 2529 Q96P16;Q96P16-3 RPRD1A Regulation of nuclear pre-mRNA domain-containing protein 1A yes no 0 0 0 0 By MS/MS 2 0 1 1 51.356 51.097 3 6.9715E-07 16040 20211116_3429_TMUAki_TMT10x_P_F2 90.654 70.273 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1303 2529 1231 6808 8303 8303 1 ALQDLENAASGDATVR Unmodified 1629.7958 0.79582747 2905 Q9NQG5 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B yes yes 0 0 0 0 By MS/MS 2 0 1 1 60.817 60.547 3 0.022063 19901 20211116_3429_TMUAki_TMT10x_P_F2 46.494 34.518 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1304 2905 1232 6809 8304 8304 1 ALQDSAPDRPSPVER Unmodified 1636.8169 0.81689726 2840 Q9H9B1;Q9H9B1-3 EHMT1 Histone-lysine N-methyltransferase EHMT1 yes no 0 0 0 1 By MS/MS 3 0 1 1 31.874 31.629 3 9.9278E-10 9689 20211116_3441_TMUAki_TMT10x_S_F3 132.15 109.02 190450 317860 248.83 344050 195190 169030 196390 245850 281520 191520 293920 177330 296700 16088 346520 187210 184710 201780 244460 283110 189290 283150 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 190450 317860 248.83 344050 195190 169030 196390 245850 281520 191520 293920 177330 296700 16088 346520 187210 184710 201780 244460 283110 189290 283150 1 1 1 1 1 1 1 1 1 1 1 53054000 0 53054000 1305 2840 1233 6810 8305 8305 1 ALQEEIDRESGKTEASETR Unmodified 2148.0295 0.029468813 1873 Q1ED39 KNOP1 Lysine-rich nucleolar protein 1 yes yes 0 0 0 2 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 38.324 38.071 4 0.00022621 10779 20211116_3429_TMUAki_TMT10x_P_F2 71.535 41.401 706110 1040800 27874 1239700 1552600 1217600 865830 1010500 1178500 887100 1133200 657630 971880 92689 1250300 1472900 1237100 923840 1034200 1183700 871470 1094500 2 2 1 2 2 2 2 2 2 2 2 397390 599210 0 626380 1241900 902090 549780 573020 643290 490220 598570 369980 559230 41089 641210 1173100 894590 596750 596740 648760 482180 578800 1 1 0 1 1 1 1 1 1 1 1 308710 441540 27874 613340 310720 315460 316040 437510 535250 396880 534610 287650 412640 51600 609120 299760 342490 327080 437450 534910 389290 515740 1 1 1 1 1 1 1 1 1 1 1 103510000 75553000 27954000 1306 1873 1234 6811;6812 8306;8307 8306 2 ALQEFDLALR Unmodified 1174.6346 0.63462279 2476 Q96GQ7 DDX27 Probable ATP-dependent RNA helicase DDX27 yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 67.474 67.504 2 0.00017078 20673 20211116_3444_TMUAki_TMT10x_S_F5 119.22 88.537 5042300 8934700 77181 9190800 6142800 5392200 5580000 5679200 6164500 6127300 6964300 4695400 8338000 505380 9301200 5880500 5733900 5707600 5773200 6274200 5965800 6693500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5042300 8934700 77181 9190800 6142800 5392200 5580000 5679200 6164500 6127300 6964300 4695400 8338000 505380 9301200 5880500 5733900 5707600 5773200 6274200 5965800 6693500 1 1 1 1 1 1 1 1 1 1 1 445600000 0 445600000 1307 2476 1235 6813;6814 8308;8309 8309 2 ALQEGAEIVVCTPGR Unmodified 1598.8086 0.80864076 2125 Q86XP3;Q86XP3-2 DDX42 ATP-dependent RNA helicase DDX42 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 1.02 2 3 3 2 5 5 53.41 53.363 2;3 5.7894E-39 16233 20211116_3442_TMUAki_TMT10x_S_F4 257.2 183.21 29704000 53317000 241530 57004000 46419000 51488000 36145000 39488000 29736000 41375000 36807000 27659000 49764000 2878900 57811000 44262000 52523000 37003000 40811000 30783000 40332000 35288000 6 6 3 6 6 6 6 6 6 6 6 20277000 35734000 182400 38717000 36118000 42981000 27583000 23579000 17737000 24823000 24208000 18881000 33355000 2056700 39351000 34427000 43087000 28120000 24990000 18705000 24192000 23152000 3 3 2 3 3 3 3 3 3 3 3 9426600 17582000 59134 18287000 10301000 8507000 8562200 15909000 11999000 16552000 12599000 8777300 16409000 822180 18460000 9835000 9436000 8882300 15821000 12078000 16139000 12135000 3 3 1 3 3 3 3 3 3 3 3 2635500000 1356000000 1279600000 1308 2125 1236 6815;6816;6817;6818;6819;6820;6821;6822;6823;6824 8310;8311;8312;8313;8314;8315 8315 6 ALQEKVEIK Unmodified 1056.6179 0.61791009 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 1 By MS/MS By MS/MS 5.6 1.2 1 2 2 3 2 42.294 42.579 3 0.0025436 12674 20211116_3446_TMUAki_TMT10x_S_F7 72.531 46.488 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1309 648 1237 6825;6826;6827;6828;6829 8316;8317;8318;8319;8320 8320 5 ALQFLEEVK Unmodified 1075.5914 0.59136099 982 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 0 By MS/MS By MS/MS 4.67 1.66 2 2 3 3 2 3 7 8 69.587 69.564 2;3 3.6641E-06 24317 20211116_3433_TMUAki_TMT10x_P_F5 188.66 152.1 192920000 321430000 1931900 318460000 256580000 332110000 225840000 241520000 233610000 235810000 260670000 179640000 299920000 18091000 325300000 245330000 335460000 230930000 249970000 238270000 230540000 250620000 19 19 12 19 19 19 19 19 19 19 19 112450000 183480000 1101100 180260000 162060000 251410000 149260000 135890000 133490000 137280000 146940000 104710000 171200000 10551000 185190000 155100000 249130000 151580000 144040000 136970000 134020000 141330000 11 11 6 11 11 11 11 11 11 11 11 80470000 137950000 830770 138200000 94517000 80703000 76584000 105630000 100120000 98530000 113740000 74931000 128730000 7539700 140110000 90220000 86322000 79349000 105930000 101310000 96522000 109300000 8 8 6 8 8 8 8 8 8 8 8 24881000000 13253000000 11628000000 1310 982 1238 6830;6831;6832;6833;6834;6835;6836;6837;6838;6839;6840;6841;6842;6843;6844 8321;8322;8323;8324;8325;8326;8327;8328;8329;8330;8331;8332;8333;8334;8335;8336;8337;8338;8339;8340 8325 20 ALQGASQIIAEIR Unmodified 1368.7725 0.77251325 87 O00429;O00429-2;O00429-4;O00429-3;O00429-5;O00429-9;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 3 3 3 3 67.653 67.911 2;3 9.5789E-30 22607 20211116_3435_TMUAki_TMT10x_P_F7 248.6 191.79 20588000 34345000 5376.6 31468000 23598000 31933000 23276000 24537000 24553000 25009000 26977000 19167000 32037000 1461800 32313000 22600000 32336000 23666000 25335000 25009000 24406000 25948000 5 5 1 5 5 5 5 5 5 5 5 10238000 15837000 0 15138000 11172000 20246000 12292000 12360000 12321000 12102000 12595000 9531500 14775000 690970 15569000 10730000 20133000 12411000 12957000 12543000 11830000 12142000 3 3 0 3 3 3 3 3 3 3 3 10350000 18508000 5376.6 16330000 12426000 11686000 10984000 12177000 12232000 12907000 14381000 9635800 17262000 770850 16744000 11871000 12203000 11255000 12378000 12466000 12576000 13807000 2 2 1 2 2 2 2 2 2 2 2 5664700000 3049300000 2615400000 1311 87 1239 6845;6846;6847;6848;6849;6850 8341;8342;8343;8344;8345;8346 8342 6 ALQHCEELIQQYNR Unmodified 1800.8577 0.85771622 2087 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 WAPAL Wings apart-like protein homolog yes no 0 0 0 0 By MS/MS 5 0 1 1 42.678 42.804 3 0.00021897 10655 20211116_3444_TMUAki_TMT10x_S_F5 81.619 60.368 1003700 1717600 0 2038300 659610 660370 551420 1674900 1869600 1522600 1568200 934430 1603900 59862 2036200 628540 780530 605790 1647200 1833700 1493300 1522100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1003700 1717600 0 2038300 659610 660370 551420 1674900 1869600 1522600 1568200 934430 1603900 59862 2036200 628540 780530 605790 1647200 1833700 1493300 1522100 1 1 0 1 1 1 1 1 1 1 1 53438000 0 53438000 1312 2087 1240 6851 8347 8347 1 ALQLEEER Unmodified 986.50327 0.50327426 682 P15311 EZR Ezrin yes yes 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 37.181 37.125 2 0.001059 8739 20211116_3440_TMUAki_TMT10x_S_F2 128.93 70.254 4247400 6510300 26089 7001600 6537700 6822500 4991900 4678100 5029000 4284700 5579100 3954900 6076600 400310 7105400 6230800 6913200 5145400 4852800 5134000 4200800 5364900 5 5 3 5 5 5 5 5 5 5 5 2691100 3908400 20910 4335400 4993400 5302600 3331900 2905700 3237600 2648400 3416200 2505800 3648600 274840 4407100 4747400 5288400 3463600 3067500 3304200 2597200 3290000 2 2 2 2 2 2 2 2 2 2 2 1556300 2601800 5178.5 2666300 1544200 1520000 1660000 1772500 1791400 1636300 2162900 1449000 2428000 125470 2698300 1483400 1624800 1681800 1785300 1829900 1603700 2075000 3 3 1 3 3 3 3 3 3 3 3 370730000 221790000 148940000 1313 682 1241 6852;6853;6854;6855 8348;8349;8350;8351;8352 8351 5 ALQLEVDRLEELK Unmodified 1554.8617 0.86172219 229 O43663;O43663-2;O43663-3;O43663-4 PRC1 Protein regulator of cytokinesis 1 yes no 0 0 0 1 By MS/MS By MS/MS 3.33 1.11 2 1 2 1 4 2 68.564 68.515 3 2.1049E-06 23197 20211116_3429_TMUAki_TMT10x_P_F2 103.92 79.936 3484200 5693500 0 5741300 3055800 3584500 3186700 3371800 3937100 3618000 4428900 3244100 5312900 280180 5821400 2933100 3779900 3248800 3446400 3989900 3523400 4257100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3484200 5693500 0 5741300 3055800 3584500 3186700 3371800 3937100 3618000 4428900 3244100 5312900 280180 5821400 2933100 3779900 3248800 3446400 3989900 3523400 4257100 1 1 0 1 1 1 1 1 1 1 1 445110000 230220000 214900000 1314 229 1242 6856;6857;6858;6859;6860;6861 8353;8354;8355;8356;8357 8354 5 ALQLLDEVLHTMPIADPQPLD Oxidation (M) 2344.1984 0.1984484 1636 Q13485 SMAD4 Mothers against decapentaplegic homolog 4 yes yes 0 0 1 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 82.174 82.161 3 1.1311E-05 28649 20211116_3429_TMUAki_TMT10x_P_F2 80.156 67.774 2380000 3518400 0 3416300 2303200 3183300 2614700 1840400 2056800 2655400 2740500 2215700 3282700 51159 3488900 2213900 3227200 2618700 1963400 2141100 2559900 2622500 2 2 0 2 2 2 2 2 2 2 2 1066300 1660400 0 1783100 1020600 2141000 1187200 959660 1018100 1533300 1506400 992560 1549700 51159 1815800 980450 2132500 1190300 1052500 1060400 1473900 1438100 1 1 0 1 1 1 1 1 1 1 1 1313600 1858000 0 1633200 1282600 1042300 1427500 880760 1038800 1122100 1234100 1223100 1732900 0 1673200 1233400 1094700 1428400 910880 1080700 1086000 1184400 1 1 0 1 1 1 1 1 1 1 1 506770000 249730000 257050000 1315 1636 1243 6862;6863;6864 8358;8359 8358 2201 2 ALQLLHCFPLDIR Unmodified 1594.8654 0.86536778 5 A0AVT1;A0AVT1-2 UBA6 Ubiquitin-like modifier-activating enzyme 6 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 76.397 76.27 3 2.7194E-09 26701 20211116_3430_TMUAki_TMT10x_P_F3 127.76 104.52 4305600 6970900 29772 7063200 4354800 6534400 5189900 3770200 3307000 4020800 4753300 4008800 6505000 346720 7191200 4195900 6627300 5162400 3980300 3498000 3916600 4540600 3 3 1 3 3 3 3 3 3 3 3 2886100 4588700 29772 4629600 2742700 5083800 3465600 2540300 2164900 2813300 3089500 2687300 4281900 246900 4726800 2648700 5093800 3437300 2719300 2292100 2736400 2951700 2 2 1 2 2 2 2 2 2 2 2 1419500 2382300 0 2433600 1612100 1450600 1724300 1229900 1142100 1207400 1663800 1321600 2223100 99826 2464300 1547200 1533500 1725100 1260900 1205900 1180100 1588900 1 1 0 1 1 1 1 1 1 1 1 1791600000 967110000 824450000 1316 5 1244 6865;6866 8360;8361;8362 8360 3 ALQNAVTTFVNR Unmodified 1332.715 0.71499837 146 O14964;O14964-2 HGS Hepatocyte growth factor-regulated tyrosine kinase substrate yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 58.937 58.632 2 6.1392E-16 19125 20211116_3429_TMUAki_TMT10x_P_F2 198.45 123.07 2797000 4691800 71912 4601600 3812200 5007000 3395900 4330900 4138100 3758800 4218500 2604800 4377600 313130 4706800 3649200 5060600 3489400 4420400 4180200 3694600 4067000 2 2 2 2 2 2 2 2 2 2 2 1570300 2476800 36008 2467700 2375100 3651100 2075000 2341500 2176100 2016700 2295900 1462400 2311000 175020 2535800 2272000 3617100 2123600 2437000 2213600 1983000 2211100 1 1 1 1 1 1 1 1 1 1 1 1226700 2215000 35904 2133900 1437100 1355900 1320900 1989400 1962000 1742000 1922600 1142400 2066500 138110 2171000 1377200 1443500 1365700 1983400 1966600 1711600 1855900 1 1 1 1 1 1 1 1 1 1 1 525030000 354250000 170780000 1317 146 1245 6867;6868;6869 8363;8364 8363 2 ALQQYTLEPSEKPFDLK Unmodified 2006.0361 0.03605774 3339 Q9Y678 COPG1 Coatomer subunit gamma-1 yes yes 0 0 0 1 By MS/MS By matching 7 0 2 1 1 64.407 64.944 3 2.8611E-05 21411 20211116_3435_TMUAki_TMT10x_P_F7 84.874 67.935 3958000 6710000 45515 6429800 5179000 8688200 5168800 5966200 5518200 4734300 4760000 3685700 6260100 387670 6613000 4968400 8650500 5254300 6166500 5571600 4674500 4615200 1 1 1 1 1 1 1 1 1 1 1 3958000 6710000 45515 6429800 5179000 8688200 5168800 5966200 5518200 4734300 4760000 3685700 6260100 387670 6613000 4968400 8650500 5254300 6166500 5571600 4674500 4615200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1210000000 719390000 490610000 1318 3339 1246 6870;6871 8365 8365 1 ALQRPSAAAPQAENGPAAAPAVAAPAATEAPK Unmodified 2964.5417 0.54173204 1753 Q15020;Q15020-4 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 0 0 0 1 By MS/MS By MS/MS 6 0 4 2 2 44.196 44.31 4;5;6 3.1648E-70 11497 20211116_3445_TMUAki_TMT10x_S_F6 236.56 223.23 4810400 8334000 177290 9736300 8649300 10109000 5868400 9363700 8941800 7150700 8260400 4480300 7781800 617810 9839200 8234200 10259000 6193200 9491700 8938100 7074900 7989600 4 4 4 4 4 4 4 4 4 4 4 2842800 5193500 132730 5800800 7358600 8630200 4698800 5825200 5188500 4403600 5319300 2647900 4848400 422630 5917200 6997000 8554300 4920400 6021700 5261600 4359400 5127300 2 2 2 2 2 2 2 2 2 2 2 1967600 3140500 44553 3935500 1290700 1478900 1169600 3538400 3753300 2747000 2941100 1832400 2933400 195170 3922000 1237300 1704400 1272700 3470000 3676500 2715500 2862300 2 2 2 2 2 2 2 2 2 2 2 1616800000 697690000 919130000 1319 1753 1247 6872;6873;6874;6875 8366;8367;8368;8369 8368 4 ALQSGQCAGAALDVFTEEPPRDR Unmodified 2487.1812 0.1812352 201 O43175 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 1 By MS/MS By MS/MS 4.15 0.948 4 4 4 1 6 7 57.175 57.145 3;4 1.7875E-77 20318 20211116_3441_TMUAki_TMT10x_S_F3 266.74 250.25 90166000 142090000 803750 149130000 115440000 155250000 105720000 105840000 102070000 104270000 119410000 83952000 132610000 7525800 151730000 110430000 156680000 107640000 110060000 104610000 101900000 114660000 36 36 16 36 36 36 36 36 36 36 36 58228000 88647000 400640 92773000 80072000 122400000 73175000 68602000 66236000 66508000 75737000 54214000 82732000 4786500 94795000 76589000 121660000 74371000 72403000 68024000 65041000 72767000 21 21 9 21 21 21 21 21 21 21 21 31938000 53445000 403110 56357000 35364000 32850000 32549000 37239000 35830000 37764000 43675000 29738000 49880000 2739300 56936000 33841000 35014000 33265000 37656000 36586000 36860000 41889000 15 15 7 15 15 15 15 15 15 15 15 26954000000 13832000000 13121000000 1320 201 1248 6876;6877;6878;6879;6880;6881;6882;6883;6884;6885;6886;6887;6888 8370;8371;8372;8373;8374;8375;8376;8377;8378;8379;8380;8381;8382;8383;8384;8385;8386;8387;8388;8389;8390;8391;8392;8393;8394;8395;8396;8397;8398;8399;8400;8401;8402;8403;8404;8405 8392 36 ALQSNIIPFCDEVMQLLLENLGNENVHR Oxidation (M) 3281.6173 0.61728152 1739 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 1 0 By MS/MS 6 0 1 1 81.013 81.002 4 0.0037789 26174 20211116_3434_TMUAki_TMT10x_P_F6 44.164 32.747 484230 787930 0 689510 415570 889860 582650 485520 510230 511070 564960 450850 734860 37339 713360 402550 885080 580030 514820 524190 498090 543300 1 1 0 1 1 1 1 1 1 1 1 484230 787930 0 689510 415570 889860 582650 485520 510230 511070 564960 450850 734860 37339 713360 402550 885080 580030 514820 524190 498090 543300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 135640000 135640000 0 1321 1739 1249 6889 8406 8406 2339 1 ALQSVGQIVGEVLK Unmodified 1439.8348 0.83477916 1357 P62333 PSMC6 26S protease regulatory subunit 10B yes yes 0 0 0 0 By MS/MS 8 0 2 2 79.417 79.422 2;3 1.5849E-06 26157 20211116_3436_TMUAki_TMT10x_P_F8 90.367 63.769 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1322 1357 1250 6890;6891 8407;8408 8407 2 ALQVVPR Unmodified 781.48102 0.48102268 2708 Q9BWH6;Q9BWH6-2;Q9BWH6-3 RPAP1 RNA polymerase II-associated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 35.987 36.481 2 0.099262 7977 20211116_3447_TMUAki_TMT10x_S_F8 54.571 27.706 926880 1481900 28932 1547500 1180700 1103200 989840 748830 804450 791560 1033700 863240 1383000 107360 1567400 1129100 1143300 1008300 780530 834640 771320 990040 2 2 2 2 2 2 2 2 2 2 2 385990 627270 17105 627280 621390 668910 426930 320130 353060 331710 404440 359520 585310 51239 640550 591970 671040 440940 343430 364240 323490 388550 1 1 1 1 1 1 1 1 1 1 1 540890 854580 11827 920250 559310 434310 562910 428700 451390 459850 629230 503710 797660 56125 926900 537100 472290 567340 437090 470400 447830 601490 1 1 1 1 1 1 1 1 1 1 1 15438000 7475200 7962800 1323 2708 1251 6892;6893 8409 8409 1 ALQYACGNALVCDNVEDARR Unmodified 2294.0532 0.053197918 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 1 By MS/MS By MS/MS 4.71 1.03 1 2 2 2 4 3 48.247 48.396 3 1.3497E-41 13951 20211116_3433_TMUAki_TMT10x_P_F5 210.12 194.17 9064000 15053000 157130 18771000 13781000 16077000 9876400 12606000 12078000 11154000 11957000 8440600 14060000 958220 18847000 13125000 16466000 10290000 12949000 12187000 10953000 11538000 8 8 6 8 8 8 8 8 8 8 8 5593300 8874600 94668 11562000 10597000 13391000 7432700 7374300 6848200 6566100 6784100 5208600 8291000 618720 11633000 10087000 13394000 7686700 7777100 6990200 6446000 6546300 4 4 3 4 4 4 4 4 4 4 4 3470700 6178200 62464 7208700 3184400 2686200 2443600 5231800 5230100 4588000 5173200 3232000 5768700 339500 7213600 3038400 3072700 2603700 5171600 5196800 4507400 4992100 4 4 3 4 4 4 4 4 4 4 4 2322300000 1654700000 667580000 1324 1723 1252 6894;6895;6896;6897;6898;6899;6900 8410;8411;8412;8413;8414;8415;8416;8417;8418;8419 8412 10 ALRETLPAEQDLTTK Unmodified 1684.8996 0.89956426 806 P25786;P25786-2 PSMA1 Proteasome subunit alpha type-1 yes no 0 0 0 1 By MS/MS 5 0 1 1 47.321 47.494 3 1.1791E-06 12536 20211116_3444_TMUAki_TMT10x_S_F5 111.22 91.898 1630600 2665100 15512 3240600 1245000 1434500 1257400 2819400 3169600 2440500 2706400 1518400 2489000 144240 3238300 1195100 1603900 1334000 2785400 3124400 2399100 2625100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1630600 2665100 15512 3240600 1245000 1434500 1257400 2819400 3169600 2440500 2706400 1518400 2489000 144240 3238300 1195100 1603900 1334000 2785400 3124400 2399100 2625100 1 1 1 1 1 1 1 1 1 1 1 149810000 0 149810000 1325 806 1253 6901 8420 8420 1 ALRTDYNASVSVPDSSGPER Unmodified 2120.0134 0.013424818 1329;1330 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 1 By MS/MS By MS/MS 3.88 0.832 2 3 16 2 1 6 18 35.659 35.706 3 1.4439E-64 5075 20211116_3442_TMUAki_TMT10x_S_F4 271.68 246.26 14594000 22206000 86341 27480000 24430000 23235000 14058000 22730000 23909000 17188000 20677000 13588000 20741000 1027200 27598000 23161000 23921000 15107000 22970000 23778000 17015000 20047000 28 28 10 28 28 28 28 28 28 28 28 7634400 11635000 43187 14198000 16389000 18308000 9287600 11509000 12666000 8765000 10611000 7108500 10866000 507270 14365000 15538000 18244000 9896700 11962000 12665000 8673400 10299000 8 8 2 8 8 8 8 8 8 8 8 6959800 10572000 43155 13282000 8041000 4927600 4769900 11221000 11244000 8422700 10067000 6479800 9874600 519920 13233000 7623800 5676600 5209800 11007000 11113000 8341300 9747300 20 20 8 20 20 20 20 20 20 20 20 15078000000 10230000000 4847300000 1326 1329;1330 1254 6902;6903;6904;6905;6906;6907;6908;6909;6910;6911;6912;6913;6914;6915;6916;6917;6918;6919;6920;6921;6922;6923;6924;6925 8421;8422;8423;8424;8425;8426;8427;8428;8429;8430;8431;8432;8433;8434;8435;8436;8437;8438;8439;8440;8441;8442;8443;8444;8445;8446;8447;8448;8449;8450;8451;8452;8453;8454 8433 34 ALRYPMAVGLNK Oxidation (M) 1347.7333 0.73329097 3288 Q9Y3U8 RPL36 60S ribosomal protein L36 yes yes 0 0 1 1 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 45.014 44.913 3 0.0030862 13809 20211116_3430_TMUAki_TMT10x_P_F3 68.836 44.806 12859000 21904000 251050 22966000 19829000 17892000 14335000 19940000 20342000 15181000 19854000 11975000 20443000 1391000 23278000 18890000 18586000 15014000 20028000 20414000 15022000 19168000 5 5 4 5 5 5 5 5 5 5 5 3187900 5216300 26325 5548000 9149500 9609100 4921700 5944900 5818900 3984100 4965600 2968400 4868600 365600 5697200 8667900 9456300 5241200 6170600 5850200 3971800 4816500 2 2 1 2 2 2 2 2 2 2 2 9671300 16688000 224730 17418000 10680000 8282800 9413500 13995000 14523000 11197000 14889000 9006600 15574000 1025400 17581000 10222000 9129900 9772900 13857000 14564000 11051000 14351000 3 3 3 3 3 3 3 3 3 3 3 894140000 545520000 348620000 1327 3288 1255 6926;6927;6928;6929 8455;8456;8457 8456 3256 3 ALRYPMAVGLNK Unmodified 1331.7384 0.73837635 3288 Q9Y3U8 RPL36 60S ribosomal protein L36 yes yes 0 0 0 1 By MS/MS By MS/MS 4.25 0.829 1 1 2 3 1 51.072 51.154 3 3.3165E-07 14791 20211116_3431_TMUAki_TMT10x_P_F4 124.46 100.1 19477000 31811000 369020 37726000 46129000 40358000 26910000 22400000 20644000 18035000 27265000 18137000 29705000 2271300 38108000 43766000 40548000 28107000 23551000 21510000 17794000 26096000 4 4 3 4 4 4 4 4 4 4 4 15073000 24711000 369020 30085000 41751000 37352000 23788000 17735000 16256000 14105000 21266000 14037000 23078000 1967200 30421000 39603000 37163000 24835000 18914000 17045000 13926000 20359000 3 3 3 3 3 3 3 3 3 3 3 4403700 7099800 0 7640600 4378700 3005700 3122400 4664700 4387300 3929400 5998500 4099800 6626900 304070 7687200 4163000 3385200 3272000 4637000 4465200 3867900 5736700 1 1 0 1 1 1 1 1 1 1 1 703850000 503050000 200790000 1328 3288 1255 6930;6931;6932;6933 8458;8459;8460;8461 8458 4 ALSAEAALAR Unmodified 971.53999 0.53999412 281 O60678;O60678-2 PRMT3 Protein arginine N-methyltransferase 3 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 40.533 40.659 2 0.0013736 11091 20211116_3442_TMUAki_TMT10x_S_F4 90.696 54.824 1555300 2560000 14484 2780000 1920500 1701400 1709400 1749900 1958400 1577000 2194800 1448200 2389600 147560 2804400 1837000 1800900 1752600 1771500 1989800 1547300 2109900 2 2 2 2 2 2 2 2 2 2 2 255780 359770 3881.1 421420 562660 503440 307930 243530 271390 234110 324680 238180 335930 29121 426790 533340 501970 324530 260440 279580 229040 311560 1 1 1 1 1 1 1 1 1 1 1 1299500 2200200 10603 2358600 1357800 1198000 1401400 1506300 1687000 1342900 1870100 1210000 2053600 118430 2377600 1303700 1298900 1428100 1511100 1710200 1318200 1798400 1 1 1 1 1 1 1 1 1 1 1 72690000 9604700 63086000 1329 281 1256 6934;6935 8462 8462 1 ALSAIADLLTNEHER Unmodified 1651.8529 0.85294842 284 O60716;O60716-3;O60716-2;O60716-6;O60716-5;O60716-7;O60716-9;O60716-8;O60716-10;O60716-12;O60716-14;O60716-11;O60716-13;O60716-16;O60716-15;O60716-4;O60716-23;O60716-22;O60716-24;O60716-17;O60716-20;O60716-18;O60716-19;O60716-21;O60716-27;O60716-29;O60716-25;O60716-28;O60716-31;O60716-32;O60716-30;O60716-26 CTNND1 Catenin delta-1 yes no 0 0 0 0 By MS/MS By MS/MS 4.33 1.37 2 2 1 1 3 3 74.006 73.959 3 7.8267E-10 25070 20211116_3435_TMUAki_TMT10x_P_F7 131.06 116.5 10250000 16703000 70489 15132000 9716200 14540000 11921000 10325000 10813000 11439000 12248000 9543900 15580000 896830 15539000 9375300 14754000 11942000 10744000 11100000 11126000 11771000 5 5 4 5 5 5 5 5 5 5 5 3342200 5230500 49284 4859200 3311400 6060100 3907400 3324900 3385500 3515000 3898300 3112300 4879200 322590 5001300 3193100 6038000 3916100 3524200 3485200 3425100 3744600 2 2 2 2 2 2 2 2 2 2 2 6907500 11473000 21205 10273000 6404700 8479500 8013500 6999900 7427900 7924300 8350000 6431600 10701000 574240 10538000 6182200 8715700 8026200 7219400 7615000 7701200 8026400 3 3 2 3 3 3 3 3 3 3 3 1197200000 529640000 667540000 1330 284 1257 6936;6937;6938;6939;6940;6941 8463;8464;8465;8466;8467;8468 8465 6 ALSAVHSPTFCQLACGQDGQLK Unmodified 2387.1362 0.13619927 2163 Q8IY67-2;Q8IY67 RAVER1 Ribonucleoprotein PTB-binding 1 yes no 0 0 0 0 By MS/MS 8 0 1 1 56.913 57.063 3 3.9178E-24 16977 20211116_3436_TMUAki_TMT10x_P_F8 153.04 142.71 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1331 2163 1258 6942 8469 8469 1 ALSEALTELGYK Unmodified 1293.6816 0.68163256 914 P34896;P34896-2;P34896-4 SHMT1 Serine hydroxymethyltransferase, cytosolic yes no 0 0 0 0 By MS/MS 6 0 1 1 76.639 76.594 3 0.0011387 24725 20211116_3445_TMUAki_TMT10x_S_F6 69.261 46.025 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1332 914 1259 6943 8470 8470 1 ALSEIAGMTLPYDTLDQVR Oxidation (M) 2108.046 0.0459705 842 P28331;P28331-3;P28331-4;P28331-5;P28331-2 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 0 0 1 0 By MS/MS 5 0 2 2 76.261 76.272 3 0.0038142 24320 20211116_3444_TMUAki_TMT10x_S_F5 58.672 47.567 2029700 3791200 0 3542500 2869800 2707400 3222500 2291900 2305800 2190400 2632000 1889700 3536700 160280 3619000 2759300 2800300 3221900 2348100 2397500 2143400 2528900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2029700 3791200 0 3542500 2869800 2707400 3222500 2291900 2305800 2190400 2632000 1889700 3536700 160280 3619000 2759300 2800300 3221900 2348100 2397500 2143400 2528900 1 1 0 1 1 1 1 1 1 1 1 251250000 0 251250000 1333 842 1260 6944;6945 8471;8472 8472 1012 2 ALSNLESIPGGYNALR Unmodified 1673.8737 0.87368386 2932;3183 Q9NRR5;Q9UMX0;Q9UMX0-2;Q9UMX0-3 UBQLN4;UBQLN1 Ubiquilin-4;Ubiquilin-1 no no 0 0 0 0 By MS/MS By MS/MS 6.75 0.433 1 3 2 2 64.173 64.552 2;3 9.9416E-47 21758 20211116_3446_TMUAki_TMT10x_S_F7 248.59 201.39 10671000 18560000 58426 18394000 12019000 14969000 11775000 11557000 11741000 11352000 14111000 9935000 17317000 828850 18725000 11513000 15384000 11955000 11917000 12030000 11095000 13539000 3 3 2 3 3 3 3 3 3 3 3 3532500 6020300 52168 6626200 4432700 7956600 4220500 4053200 3966400 4171400 4855300 3289500 5619800 354100 6736900 4248100 7935800 4284200 4321500 4077800 4069100 4656200 1 1 1 1 1 1 1 1 1 1 1 7138300 12539000 6258.4 11767000 7586300 7012100 7554100 7504300 7774800 7180600 9255400 6645400 11698000 474760 11988000 7265300 7447800 7671000 7595400 7952400 7026200 8882500 2 2 1 2 2 2 2 2 2 2 2 2798900000 1254700000 1544200000 1334 2932;3183 1261 6946;6947;6948;6949 8473;8474;8475 8474 3 ALSNLESIPGGYNALRR Unmodified 1829.9748 0.97479489 2932;3183 Q9NRR5;Q9UMX0;Q9UMX0-2;Q9UMX0-3 UBQLN4;UBQLN1 Ubiquilin-4;Ubiquilin-1 no no 0 0 0 1 By MS/MS By MS/MS 2.8 2.64 2 2 1 3 2 55.478 55.353 3 1.7532E-15 16149 20211116_3428_TMUAki_TMT10x_P_F1 151.49 127.56 23142000 39008000 378380 38368000 31876000 45930000 29519000 33648000 31417000 29810000 31457000 21546000 36396000 1932400 39300000 30498000 46048000 30124000 34716000 31880000 29272000 30344000 7 7 3 7 7 7 7 7 7 7 7 17742000 29273000 358410 28251000 25142000 40326000 24337000 24985000 23678000 22587000 23788000 16519000 27311000 1537900 29073000 24085000 39992000 24708000 26106000 24121000 22158000 22944000 5 5 2 5 5 5 5 5 5 5 5 5399700 9735400 19965 10117000 6734500 5604400 5182100 8662500 7739000 7222900 7669300 5027100 9085600 394490 10227000 6413600 6056500 5416700 8610000 7758800 7113600 7400400 2 2 1 2 2 2 2 2 2 2 2 9742100000 6015200000 3726900000 1335 2932;3183 1262 6950;6951;6952;6953;6954 8476;8477;8478;8479;8480;8481;8482 8476 7 ALSPAELR Unmodified 855.48142 0.48141661 1686 Q14160;Q14160-3;Q14160-2 SCRIB Protein scribble homolog yes no 0 0 0 0 By MS/MS 4 0 1 1 37.319 37.477 2 0.027599 9799 20211116_3442_TMUAki_TMT10x_S_F4 64.567 15.812 260360 436840 18836 451840 281110 289640 312150 263940 288090 248340 361280 242560 407680 39431 457470 271460 304490 314260 269180 296740 243180 346240 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 260360 436840 18836 451840 281110 289640 312150 263940 288090 248340 361280 242560 407680 39431 457470 271460 304490 314260 269180 296740 243180 346240 1 1 1 1 1 1 1 1 1 1 1 6163200 0 6163200 1336 1686 1263 6955 8483 8483 1 ALSQRDPPHNNFFFFDGMK Oxidation (M) 2283.0531 0.053121563 3076 Q9UBE0 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed yes yes 0 0 1 1 By MS/MS By MS/MS 8 0 2 1 1 56.035 56.074 4 0.00011253 16582 20211116_3436_TMUAki_TMT10x_P_F8 74.657 60.496 7913000 13372000 48482 12297000 9355400 11546000 7819100 17646000 17203000 14437000 13116000 7367700 12473000 669170 12609000 8931400 11945000 8302100 17537000 16945000 14232000 12779000 3 3 2 3 3 3 3 3 3 3 3 2882200 4148500 27621 4328600 3511000 6292200 3325200 5169500 4187100 4153900 4064000 2683900 3871700 273500 4432500 3363500 6263700 3409300 5282200 4217600 4098700 3924200 1 1 1 1 1 1 1 1 1 1 1 5030700 9223000 20861 7968000 5844500 5253500 4493900 12476000 13015000 10283000 9051700 4683900 8601300 395660 8176700 5567900 5681700 4892800 12255000 12727000 10133000 8854500 2 2 1 2 2 2 2 2 2 2 2 1046500000 597300000 449180000 1337 3076 1264 6956;6957 8484;8485;8486 8484 3124 3 ALSRQEMQEVQSSR Oxidation (M) 1663.7948 0.79478161 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 1 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 28.376 28.222 3 2.9211E-06 8385 20211116_3441_TMUAki_TMT10x_S_F3 110.55 98.263 201570 319890 1248.9 350760 460010 350320 217430 249020 270380 202180 289810 187690 298610 18181 355650 435050 354640 234870 256890 273440 199390 278970 4 4 2 4 4 4 4 4 4 4 4 167360 267630 1248.9 299690 399770 323600 190360 199780 211310 165800 231390 155840 249840 18181 303820 378120 325410 204690 208350 214760 163330 222590 3 3 2 3 3 3 3 3 3 3 3 34210 52263 0 51077 60236 26721 27067 49238 59074 36383 58416 31853 48763 0 51827 56924 29230 30181 48541 58674 36064 56372 1 1 0 1 1 1 1 1 1 1 1 40987000 22681000 18306000 1338 772 1265 6958;6959;6960 8487;8488;8489;8490 8490 897 4 ALSRQEMQEVQSSR Unmodified 1647.7999 0.79986699 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 32.93 32.957 3 1.3928E-14 7576 20211116_3431_TMUAki_TMT10x_P_F4 157.91 114.96 586900 796530 0 1202000 2792600 1388500 876420 599660 731300 518190 907570 546450 744760 78060 1200400 2629400 1385300 984690 647070 756570 509450 870040 1 1 0 1 1 1 1 1 1 1 1 586900 796530 0 1202000 2792600 1388500 876420 599660 731300 518190 907570 546450 744760 78060 1200400 2629400 1385300 984690 647070 756570 509450 870040 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 87704000 87704000 0 1339 772 1265 6961;6962 8491;8492 8491 2 ALSSEGKPYVTKEELYQNLTR Unmodified 2425.2489 0.24890406 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 2 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 59.096 59.065 4 3.4204E-44 19827 20211116_3439_TMUAki_TMT10x_S_F1 207.86 184.41 25185000 44283000 156510 39122000 38884000 55155000 36473000 42809000 42254000 41336000 37313000 23450000 41301000 2341700 40515000 37228000 54922000 37301000 44104000 42558000 40432000 36148000 5 5 3 5 5 5 5 5 5 5 5 16728000 29380000 156510 25930000 28153000 45411000 28428000 28712000 28494000 27941000 24813000 15577000 27402000 1692700 26988000 27011000 44685000 28824000 30012000 28854000 27320000 24050000 3 3 3 3 3 3 3 3 3 3 3 8456600 14903000 0 13192000 10732000 9744000 8044900 14097000 13761000 13395000 12501000 7873300 13899000 648980 13527000 10217000 10237000 8477700 14092000 13704000 13112000 12098000 2 2 0 2 2 2 2 2 2 2 2 3616400000 2354800000 1261600000 1340 1663 1266 6963;6964;6965;6966 8493;8494;8495;8496;8497 8496 5 ALSTGEK Unmodified 704.37047 0.37046918 1385 P62937;F5H284;Q9Y536;P0DN26;A0A0B4J2A2;A0A075B767;A0A075B759;P0DN37 PPIA;PPIAL4D;PPIAL4A;PPIAL4C;PPIAL4E Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase A-like 4D;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 31.877 31.786 2 0.0020851 9704 20211116_3441_TMUAki_TMT10x_S_F3 130 41.651 5874900 8579700 18819 6593900 5661000 7764900 5156000 3675700 3872400 3712900 5933100 5470000 7998300 469540 6884600 5414400 7746300 5216700 3944700 4068800 3624700 5659600 3 3 1 3 3 3 3 3 3 3 3 4491300 6391800 0 4948300 4131800 6104400 3671500 2830900 2981700 2850000 4429000 4181600 5958800 335260 5167400 3948100 6073900 3726900 3044000 3114900 2782600 4227700 2 2 0 2 2 2 2 2 2 2 2 1383600 2187900 18819 1645500 1529200 1660500 1484500 844840 890780 862950 1504100 1288400 2039500 134290 1717200 1466300 1672400 1489800 900680 953960 842050 1432000 1 1 1 1 1 1 1 1 1 1 1 213740000 126850000 86885000 1341 1385 1267 6967;6968;6969 8498;8499;8500 8500 3 ALSTSCLVCCLCQNPANFK Unmodified 2242.0003 0.0002994105 2085 Q7Z5J4;Q7Z5J4-2 RAI1 Retinoic acid-induced protein 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 72.386 72.164 3 4.4791E-05 25120 20211116_3430_TMUAki_TMT10x_P_F3 78.228 68.031 3391300 5669200 51855 4835400 3602000 7157700 4169200 4656700 4386400 4200000 5060700 3157900 5286900 308410 5026500 3469600 7092400 4206100 4847200 4476900 4120800 4861000 2 2 1 2 2 2 2 2 2 2 2 3391300 5669200 51855 4835400 3602000 7157700 4169200 4656700 4386400 4200000 5060700 3157900 5286900 308410 5026500 3469600 7092400 4206100 4847200 4476900 4120800 4861000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 366400000 366400000 0 1342 2085 1268 6970 8501;8502 8502 2 ALSVETEK Unmodified 875.46001 0.46001246 602 P10155;P10155-5;P10155-3;P10155-4 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes no 0 0 0 0 By MS/MS 4 0 1 1 36.793 36.926 2 0.00044268 9571 20211116_3442_TMUAki_TMT10x_S_F4 150.4 66.155 187200 335530 1825.9 325530 203420 176720 220980 180260 171480 153810 248040 174320 313050 17449 330570 195600 189290 221700 182310 179330 151310 236910 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 187200 335530 1825.9 325530 203420 176720 220980 180260 171480 153810 248040 174320 313050 17449 330570 195600 189290 221700 182310 179330 151310 236910 1 1 1 1 1 1 1 1 1 1 1 4499400 0 4499400 1343 602 1269 6971 8503 8503 1 ALSVGLVK Unmodified 785.50109 0.50108942 3195 Q9UNM6;Q9UNM6-2 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 0 0 0 0 By MS/MS 1 0 1 1 53.021 52.732 2 0.0013201 17219 20211116_3439_TMUAki_TMT10x_S_F1 124.08 64.874 4696200 8044400 46926 7776900 5383900 4986300 5420900 6264000 5993500 6177100 7025700 4373000 7505300 442710 7910900 5166100 5280600 5514500 6301700 6108900 6036500 6745500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4696200 8044400 46926 7776900 5383900 4986300 5420900 6264000 5993500 6177100 7025700 4373000 7505300 442710 7910900 5166100 5280600 5514500 6301700 6108900 6036500 6745500 1 1 1 1 1 1 1 1 1 1 1 282640000 0 282640000 1344 3195 1270 6972 8504 8504 1 ALSVGNIDDALQCYSEAIK Unmodified 2065.999 0.99902031 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.28 1.3 3 11 8 8 10 26 14 71.93 71.943 2;3 2.0313E-79 25302 20211116_3434_TMUAki_TMT10x_P_F6 299.25 254.64 201160000 321790000 1167300 314730000 206860000 276430000 244470000 159850000 153040000 180960000 236970000 187300000 300230000 11946000 321000000 199260000 281350000 243180000 169040000 162670000 175870000 226000000 35 35 16 35 35 35 35 35 35 35 35 121570000 188430000 514390 185270000 109080000 190570000 134160000 97917000 89445000 109890000 139520000 113200000 175820000 6562300 189310000 105210000 191730000 133390000 104590000 94728000 106830000 133040000 20 20 8 20 20 20 20 20 20 20 20 79590000 133350000 652910 129460000 97784000 85859000 110310000 61937000 63592000 71076000 97447000 74105000 124420000 5383500 131700000 94059000 89620000 109790000 64454000 67939000 69040000 92956000 15 15 8 15 15 15 15 15 15 15 15 50556000000 26223000000 24333000000 1345 897 1271 6973;6974;6975;6976;6977;6978;6979;6980;6981;6982;6983;6984;6985;6986;6987;6988;6989;6990;6991;6992;6993;6994;6995;6996;6997;6998;6999;7000;7001;7002;7003;7004;7005;7006;7007;7008;7009;7010;7011;7012 8505;8506;8507;8508;8509;8510;8511;8512;8513;8514;8515;8516;8517;8518;8519;8520;8521;8522;8523;8524;8525;8526;8527;8528;8529;8530;8531;8532;8533;8534;8535;8536;8537;8538;8539;8540;8541;8542;8543;8544;8545;8546;8547;8548;8549;8550;8551;8552;8553;8554;8555;8556;8557;8558 8518 54 ALSVGNIDDALQCYSEAIKLDPHNHVLYSNR Unmodified 3511.7154 0.71541566 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 1 By MS/MS By MS/MS 7.43 0.728 1 2 4 4 3 76.582 76.584 4;5 1.2193E-35 24403 20211116_3447_TMUAki_TMT10x_S_F8 173.92 159.69 34400000 67541000 330850 59744000 51392000 66349000 53497000 41460000 39104000 47323000 48632000 32030000 62994000 2067800 61598000 49332000 66626000 53709000 43585000 40749000 45976000 46618000 8 8 5 8 8 8 8 8 8 8 8 15367000 31409000 303030 25054000 16197000 38418000 22638000 19757000 18362000 23426000 20469000 14310000 29284000 1040800 26208000 15711000 37894000 22494000 21139000 18942000 22728000 19681000 4 4 3 4 4 4 4 4 4 4 4 19033000 36132000 27822 34690000 35194000 27931000 30859000 21703000 20742000 23897000 28162000 17720000 33710000 1027000 35390000 33622000 28731000 31215000 22446000 21807000 23249000 26938000 4 4 2 4 4 4 4 4 4 4 4 26556000000 18042000000 8513700000 1346 897 1272 7013;7014;7015;7016;7017;7018;7019 8559;8560;8561;8562;8563;8564;8565 8563 7 ALTDAGCNLNPLQYIK Unmodified 1789.9033 0.90326943 2309 Q8WVM8;Q8WVM8-2;Q8WVM8-3 SCFD1 Sec1 family domain-containing protein 1 yes no 0 0 0 0 By MS/MS 8 0 1 1 77.626 77.633 3 2.7114E-06 25429 20211116_3436_TMUAki_TMT10x_P_F8 87.566 67.459 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1347 2309 1273 7020 8566 8566 1 ALTGGIAHLFK Unmodified 1126.6499 0.64987892 582 P09622;P09622-3;P09622-2 DLD Dihydrolipoyl dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 59.527 59.362 3 1.1225E-06 18702 20211116_3442_TMUAki_TMT10x_S_F4 124.1 99.249 10365000 18359000 111740 17112000 13581000 14794000 9888100 14274000 13780000 12643000 14131000 9651200 17126000 995690 17511000 12936000 15202000 10343000 14491000 13861000 12415000 13621000 5 5 4 5 5 5 5 5 5 5 5 3599600 6103100 65942 5837800 4924800 7922200 3971800 4531800 4667900 4223200 4960700 3352100 5693900 378450 6005400 4702200 7865900 4100100 4769500 4728700 4137300 4776400 2 2 2 2 2 2 2 2 2 2 2 6765000 12255000 45799 11275000 8656600 6871300 5916300 9742600 9111900 8419400 9170600 6299100 11432000 617240 11505000 8233400 7336200 6243400 9721100 9132000 8277300 8844700 3 3 2 3 3 3 3 3 3 3 3 1709200000 796090000 913130000 1348 582 1274 7021;7022;7023;7024 8567;8568;8569;8570;8571 8571 5 ALTHIDHSLSR Unmodified 1248.6575 0.65748349 1254 P56192;P56192-2 MARS Methionine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS 5 0 1 1 31.26 31.196 3 0.0028451 7196 20211116_3433_TMUAki_TMT10x_P_F5 67.385 52.234 495080 748580 19032 732210 821850 839950 543410 523060 595610 517900 644210 461110 698440 63359 749740 782180 841920 567380 547650 605370 506020 619940 1 1 1 1 1 1 1 1 1 1 1 495080 748580 19032 732210 821850 839950 543410 523060 595610 517900 644210 461110 698440 63359 749740 782180 841920 567380 547650 605370 506020 619940 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17258000 17258000 0 1349 1254 1275 7025 8572 8572 1 ALTLGALTLPLAR Unmodified 1308.8129 0.8129215 2652 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 78.316 78.319 2 2.8978E-09 25135 20211116_3444_TMUAki_TMT10x_S_F5 135.8 83.392 12611000 20564000 157140 21067000 13680000 18188000 15699000 13147000 12428000 13237000 14838000 11742000 19190000 1092000 21413000 13170000 18593000 15718000 13624000 12872000 12925000 14239000 2 2 1 2 2 2 2 2 2 2 2 5113000 8176600 0 8381600 5395600 10007000 6008400 5420300 5444600 5493100 5758800 4759800 7630400 312910 8560400 5181500 9990900 6045100 5744700 5574700 5361800 5545600 1 1 0 1 1 1 1 1 1 1 1 7498000 12387000 157140 12685000 8284800 8180900 9691100 7726500 6983500 7744300 9078800 6982600 11559000 779110 12852000 7988700 8601700 9672800 7879300 7297400 7562800 8693100 1 1 1 1 1 1 1 1 1 1 1 1440800000 639590000 801170000 1350 2652 1276 7026;7027;7028 8573;8574 8574 2 ALTLIAGSPLK Unmodified 1082.6699 0.66994566 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 3 2 1 67.49 67.142 2;3 1.0467E-21 24133 20211116_3441_TMUAki_TMT10x_S_F3 214.58 140.25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1351 2116 1277 7029;7030;7031 8575;8576;8577 8577 3 ALTNLPHTDFTLCK Unmodified 1629.8185 0.81847717 3084 Q9UBQ5;Q9UBQ5-2 EIF3K Eukaryotic translation initiation factor 3 subunit K yes no 0 0 0 0 By MS/MS By MS/MS 5 3.29 2 1 2 2 3 59.166 59.244 3 1.736E-23 17818 20211116_3436_TMUAki_TMT10x_P_F8 182.02 162.69 52069000 88782000 821560 89598000 56332000 68376000 51878000 59501000 53901000 57277000 65558000 48485000 82846000 4868100 91029000 53933000 70766000 52918000 60878000 55160000 56032000 62880000 7 7 5 7 7 7 7 7 7 7 7 13600000 23082000 50221 24575000 22900000 31601000 18676000 16247000 14834000 14699000 17143000 12663000 21543000 1285400 25070000 21853000 31415000 19046000 17248000 15342000 14420000 16466000 2 2 1 2 2 2 2 2 2 2 2 38470000 65700000 771340 65022000 33432000 36774000 33202000 43254000 39066000 42578000 48414000 35823000 61303000 3582700 65959000 32080000 39351000 33872000 43631000 39818000 41612000 46414000 5 5 4 5 5 5 5 5 5 5 5 6077900000 2864000000 3214000000 1352 3084 1278 7032;7033;7034;7035;7036 8578;8579;8580;8581;8582;8583;8584 8579 7 ALTPAATLSAVQNLVVEGLR Unmodified 2022.1473 0.14733952 2460 Q96FJ0;Q96FJ0-2 STAMBPL1 AMSH-like protease yes no 0 0 0 0 By matching By MS/MS 3.5 0.5 1 1 1 1 81.827 81.796 3 3.913E-51 27825 20211116_3442_TMUAki_TMT10x_S_F4 218.79 196.95 641770 1030300 9932.2 956920 712080 662370 705740 539350 518160 604780 688720 597620 961090 63448 976990 683220 690180 710390 556540 541400 587960 659100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 641770 1030300 9932.2 956920 712080 662370 705740 539350 518160 604780 688720 597620 961090 63448 976990 683220 690180 710390 556540 541400 587960 659100 1 1 1 1 1 1 1 1 1 1 1 342170000 47335000 294830000 1353 2460 1279 7037;7038 8585 8585 1 ALTPQTAETDAIR Unmodified 1385.7151 0.71505795 1909 Q53HC9 TSSC1 Protein TSSC1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 40.654 40.709 2 3.4392E-10 12199 20211116_3430_TMUAki_TMT10x_P_F3 140.45 78.775 153240 222070 0 337850 490160 393480 238160 153550 182190 140610 211200 142680 207650 17340 337320 463650 392020 253020 167840 188830 137860 202830 1 1 0 1 1 1 1 1 1 1 1 153240 222070 0 337850 490160 393480 238160 153550 182190 140610 211200 142680 207650 17340 337320 463650 392020 253020 167840 188830 137860 202830 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16681000 16681000 0 1354 1909 1280 7039 8586 8586 1 ALTSEIALLQSR Unmodified 1300.7351 0.73506511 494 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.43 0.495 4 3 3 4 65.023 65.266 2;3 2.7047E-19 22040 20211116_3446_TMUAki_TMT10x_S_F7 224.13 168.42 19175000 32942000 134150 30655000 25195000 31297000 22946000 26213000 24918000 24258000 25376000 17852000 30730000 1514000 31444000 24092000 31729000 23454000 26850000 25280000 23772000 24465000 4 4 1 4 4 4 4 4 4 4 4 9634300 15108000 0 14139000 12889000 20146000 12832000 12240000 12052000 11617000 11571000 8969000 14094000 658610 14583000 12345000 19976000 12995000 12825000 12278000 11371000 11177000 2 2 0 2 2 2 2 2 2 2 2 9540300 17834000 134150 16516000 12306000 11151000 10114000 13973000 12866000 12641000 13806000 8883200 16636000 855400 16862000 11747000 11754000 10459000 14025000 13002000 12401000 13289000 2 2 1 2 2 2 2 2 2 2 2 4904600000 2750500000 2154100000 1355 494 1281 7040;7041;7042;7043;7044;7045;7046 8587;8588;8589;8590;8591 8591 5 ALTSFER Unmodified 822.42357 0.42356738 992 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 37.848 37.94 2 0.031535 10956 20211116_3430_TMUAki_TMT10x_P_F3 79.146 38.293 2645300 3995800 271840 4318500 2787900 2301000 2250600 1784100 2340300 1523300 1211800 2465100 3729700 474660 4352700 2676100 2456900 2313700 1832200 2336900 1498500 1203900 3 3 3 3 3 3 3 3 3 3 3 1401000 2482200 253680 1827400 1439200 1360600 1100500 969210 1536100 204040 299350 1306400 2313700 353110 1903500 1386800 1406100 1147400 982270 1499800 230800 327060 2 2 2 2 2 2 2 2 2 2 2 1244300 1513600 18154 2491100 1348700 940400 1150100 814850 804150 1319300 912430 1158700 1416000 121540 2449100 1289300 1050800 1166300 849910 837070 1267700 876830 1 1 1 1 1 1 1 1 1 1 1 31902000 7252600 24650000 1356 992 1282 7047;7048 8592;8593;8594 8593 3 ALTSFLPAPTQLSQDQLEAEEK Acetyl (Protein N-term) 2457.2275 0.22749992 1649 Q13573 SNW1 SNW domain-containing protein 1 yes yes 1 0 0 0 By MS/MS By MS/MS 2.67 1.15 2 2 2 3 4 5 81.28 81.26 2;3 3.8805E-54 27602 20211116_3442_TMUAki_TMT10x_S_F4 178.67 163.12 19610000 32600000 104480 30360000 23311000 27694000 25228000 17734000 18313000 19555000 25210000 18258000 30411000 1622800 31091000 22396000 28154000 25276000 18588000 19178000 19023000 24106000 11 11 4 11 11 11 11 11 11 11 11 8269700 13734000 87669 12171000 7320500 14742000 9777300 7366900 7926100 8145100 10526000 7699800 12810000 655510 12565000 7079900 14694000 9731700 7885600 8236800 7922900 10074000 4 4 2 4 4 4 4 4 4 4 4 11340000 18866000 16814 18189000 15991000 12952000 15451000 10367000 10387000 11410000 14684000 10558000 17601000 967340 18526000 15316000 13460000 15544000 10702000 10941000 11100000 14032000 7 7 2 7 7 7 7 7 7 7 7 12170000000 5720500000 6450000000 1357 1649 1283 7049;7050;7051;7052;7053;7054;7055;7056;7057 8595;8596;8597;8598;8599;8600;8601;8602;8603;8604;8605;8606 8606 12 ALTSQLTDEELAQGR Unmodified 1630.8162 0.81622856 780 P23368 ME2 NAD-dependent malic enzyme, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 2.6 0.49 2 3 3 2 51.472 51.308 2;3 9.5596E-100 16576 20211116_3430_TMUAki_TMT10x_P_F3 359.92 308.58 3654700 5892700 48154 6417300 6053100 8149600 4779600 4748900 4377900 3989200 5097700 3403100 5500500 366160 6535500 5773900 8119000 4902300 4977200 4496900 3927400 4895300 3 3 2 3 3 3 3 3 3 3 3 3654700 5892700 48154 6417300 6053100 8149600 4779600 4748900 4377900 3989200 5097700 3403100 5500500 366160 6535500 5773900 8119000 4902300 4977200 4496900 3927400 4895300 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 467140000 467140000 0 1358 780 1284 7058;7059;7060;7061;7062 8607;8608;8609;8610;8611 8609 5 ALTTMGFR Oxidation (M) 911.45349 0.4534873 877 P30626;P30626-2;P30626-3 SRI Sorcin yes no 0 0 1 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 36.833 37.232 2 0.012818 8844 20211116_3436_TMUAki_TMT10x_P_F8 85.359 56.937 532310 947190 34577 906110 1131900 1022000 642050 899230 1014000 677370 833150 495890 883680 84755 929020 1075100 1031200 688390 913830 1008900 670690 809310 2 2 2 2 2 2 2 2 2 2 2 257540 432390 27096 406490 794630 769900 388520 388210 451890 302830 376010 239990 403370 54126 421950 753360 753330 417290 411410 454260 299280 365070 1 1 1 1 1 1 1 1 1 1 1 274780 514800 7481.9 499620 337260 252090 253530 511020 562140 374540 457140 255900 480310 30629 507060 321730 277900 271100 502420 554650 371420 444240 1 1 1 1 1 1 1 1 1 1 1 102310000 57556000 44750000 1359 877 1285 7063;7064;7065 8612;8613;8614 8613 1050 3 ALTVPELTQQMFDAK Oxidation (M) 1706.8549 0.85492225 1418;1640;488 Q13509;Q13509-2;P68371;P04350 TUBB3;TUBB4B;TUBB4A Tubulin beta-3 chain;Tubulin beta-4B chain;Tubulin beta-4A chain no no 0 0 1 0 By MS/MS By MS/MS 6.46 0.962 3 8 15 34 5 34 31 40.73 40.821 2;3;4 3.2689E-14 22745 20211116_3446_TMUAki_TMT10x_S_F7 142.38 34.738 106020000 179720000 1452500 166730000 129130000 205580000 124140000 180950000 173410000 166530000 155020000 98725000 167650000 9989600 171590000 123750000 206480000 127710000 184790000 173600000 163240000 150110000 64 64 48 64 64 64 64 64 64 64 64 66073000 108490000 921620 104030000 79758000 158050000 83755000 108190000 103920000 99856000 93293000 61525000 101220000 6235600 107250000 76613000 156550000 85371000 112260000 104460000 97868000 90325000 40 40 31 40 40 40 40 40 40 40 40 39949000 71227000 530920 62694000 49373000 47530000 40390000 72764000 69484000 66679000 61728000 37199000 66431000 3754000 64335000 47135000 49923000 42339000 72526000 69139000 65372000 59787000 24 24 17 24 24 24 24 24 24 24 24 68154000000 36459000000 31695000000 1360 1640;1418;488 1286 7066;7067;7068;7069;7070;7071;7072;7073;7074;7075;7076;7077;7078;7079;7080;7081;7082;7083;7084;7085;7086;7087;7088;7089;7090;7091;7092;7093;7094;7095;7096;7097;7098;7099;7100;7101;7102;7103;7104;7105;7106;7107;7108;7109;7110;7111;7112;7113;7114;7115;7116;7117;7118;7119;7120;7121;7122;7123;7124;7125;7126;7127;7128;7129;7130 8615;8616;8617;8618;8619;8620;8621;8622;8623;8624;8625;8626;8627;8628;8629;8630;8631;8632;8633;8634;8635;8636;8637;8638;8639;8640;8641;8642;8643;8644;8645;8646;8647;8648;8649;8650;8651;8652;8653;8654;8655;8656;8657;8658;8659;8660;8661;8662;8663;8664;8665;8666;8667;8668;8669;8670;8671;8672;8673;8674;8675;8676;8677;8678;8679;8680;8681;8682;8683;8684 8680 378 70 ALTVPELTQQMFDAK Unmodified 1690.86 0.86000763 1418;1640;488 Q13509;Q13509-2;P68371;P04350 TUBB3;TUBB4B;TUBB4A Tubulin beta-3 chain;Tubulin beta-4B chain;Tubulin beta-4A chain no no 0 0 0 0 By MS/MS By MS/MS 6.65 1.13 3 10 12 26 17 41 27 56.248 56.292 2;3 1.5077E-60 27086 20211116_3435_TMUAki_TMT10x_P_F7 296.52 266.97 435110000 680330000 755850 718920000 465940000 376800000 485710000 157130000 120320000 201010000 416430000 405100000 634970000 33433000 725580000 447070000 400020000 480330000 172160000 148900000 194510000 392550000 70 70 30 70 70 70 70 70 70 70 70 160890000 246740000 298160 255380000 148540000 185940000 180650000 64670000 51363000 80352000 151530000 149790000 230260000 11664000 258880000 143140000 190980000 177560000 72342000 61465000 77830000 143070000 41 41 17 41 41 41 41 41 41 41 41 274220000 433600000 457690 463540000 317400000 190860000 305060000 92460000 68959000 120660000 264900000 255310000 404710000 21770000 466700000 303930000 209040000 302770000 99817000 87438000 116680000 249470000 29 29 13 29 29 29 29 29 29 29 29 98593000000 44003000000 54590000000 1361 1640;1418;488 1286 7131;7132;7133;7134;7135;7136;7137;7138;7139;7140;7141;7142;7143;7144;7145;7146;7147;7148;7149;7150;7151;7152;7153;7154;7155;7156;7157;7158;7159;7160;7161;7162;7163;7164;7165;7166;7167;7168;7169;7170;7171;7172;7173;7174;7175;7176;7177;7178;7179;7180;7181;7182;7183;7184;7185;7186;7187;7188;7189;7190;7191;7192;7193;7194;7195;7196;7197;7198 8685;8686;8687;8688;8689;8690;8691;8692;8693;8694;8695;8696;8697;8698;8699;8700;8701;8702;8703;8704;8705;8706;8707;8708;8709;8710;8711;8712;8713;8714;8715;8716;8717;8718;8719;8720;8721;8722;8723;8724;8725;8726;8727;8728;8729;8730;8731;8732;8733;8734;8735;8736;8737;8738;8739;8740;8741;8742;8743;8744;8745;8746;8747;8748;8749;8750;8751;8752;8753;8754;8755;8756;8757;8758;8759;8760;8761;8762;8763;8764;8765;8766;8767;8768 8713 84 ALTVPELTQQMFDSK Oxidation (M) 1722.8498 0.84983687 1668;2689 Q13885;Q9BVA1 TUBB2A;TUBB2B Tubulin beta-2A chain;Tubulin beta-2B chain no no 0 0 1 0 By MS/MS By MS/MS 6.13 1.3 1 2 4 4 10 2 16 7 59.404 59.491 2;3 8.4702E-10 21941 20211116_3435_TMUAki_TMT10x_P_F7 138.25 121.72 94276000 163510000 817870 154420000 115810000 174380000 110190000 144380000 143010000 136390000 134070000 87781000 152540000 8129800 158470000 110900000 175740000 113080000 148070000 143740000 133530000 129610000 36 36 20 36 36 36 36 36 36 36 36 52059000 92191000 502760 87352000 65144000 127020000 67678000 79433000 78460000 76245000 74539000 48474000 86006000 4777300 90048000 62545000 125880000 68850000 83068000 79209000 74596000 72026000 23 23 16 23 23 23 23 23 23 23 23 42217000 71320000 315110 67068000 50664000 47354000 42513000 64946000 64552000 60145000 59536000 39306000 66533000 3352500 68426000 48357000 49853000 44232000 65002000 64528000 58938000 57587000 13 13 4 13 13 13 13 13 13 13 13 17549000000 9367300000 8181900000 1362 1668;2689 1287 7199;7200;7201;7202;7203;7204;7205;7206;7207;7208;7209;7210;7211;7212;7213;7214;7215;7216;7217;7218;7219;7220;7221 8769;8770;8771;8772;8773;8774;8775;8776;8777;8778;8779;8780;8781;8782;8783;8784;8785;8786;8787;8788;8789;8790;8791;8792;8793;8794;8795;8796;8797;8798;8799;8800;8801;8802;8803;8804;8805;8806 8789 2237 38 ALTVPELTQQMFDSK Unmodified 1706.8549 0.85492225 1668;2689 Q13885;Q9BVA1 TUBB2A;TUBB2B Tubulin beta-2A chain;Tubulin beta-2B chain no no 0 0 0 0 By MS/MS By MS/MS 6.96 0.981 3 5 10 10 20 8 66.284 66.306 2;3 1.6253E-51 25355 20211116_3445_TMUAki_TMT10x_S_F6 290.13 21.547 197880000 321070000 9322800 349300000 235340000 258720000 245960000 163490000 121900000 157140000 242990000 184300000 299700000 24673000 353000000 226420000 267020000 245090000 170840000 133740000 153740000 230660000 30 30 20 30 30 30 30 30 30 30 30 117580000 184780000 5169500 201110000 133430000 186740000 152590000 93756000 69578000 90046000 137500000 109520000 172480000 14228000 203790000 128690000 189040000 151200000 99907000 76826000 88097000 130540000 23 23 16 23 23 23 23 23 23 23 23 80293000 136290000 4153300 148200000 101910000 71979000 93369000 69736000 52320000 67098000 105490000 74789000 127220000 10445000 149200000 97727000 77979000 93884000 70937000 56910000 65640000 100120000 7 7 4 7 7 7 7 7 7 7 7 24966000000 12419000000 12547000000 1363 1668;2689 1287 7222;7223;7224;7225;7226;7227;7228;7229;7230;7231;7232;7233;7234;7235;7236;7237;7238;7239;7240;7241;7242;7243;7244;7245;7246;7247;7248;7249 8807;8808;8809;8810;8811;8812;8813;8814;8815;8816;8817;8818;8819;8820;8821;8822;8823;8824;8825;8826;8827;8828;8829;8830;8831;8832;8833;8834;8835;8836;8837;8838;8839;8840 8835 34 ALTVPELTQQVFDAK Unmodified 1658.8879 0.88793694 539 P07437 TUBB Tubulin beta chain yes yes 0 0 0 0 By MS/MS By MS/MS 6.39 1.37 3 2 12 11 47 59 144 57 193 142 59.531 59.573 2;3;4 2.8016E-51 228 20211116_3436_TMUAki_TMT10x_P_F8 285.54 230.96 722090000 1174600000 5640800 1116500000 813350000 1048500000 827820000 694910000 692880000 731400000 872670000 672330000 1095800000 59169000 1142100000 780190000 1064400000 834760000 725470000 717180000 712820000 836270000 312 313 131 312 311 314 312 312 313 311 311 403070000 634770000 3818100 609270000 387580000 689770000 443550000 379320000 379530000 398450000 479500000 375300000 592210000 32562000 624560000 373050000 690750000 445000000 401910000 392450000 388360000 459460000 204 205 83 204 203 206 204 204 205 204 203 319020000 539860000 1822800 507250000 425770000 358720000 384270000 315590000 313360000 332950000 393170000 297030000 503630000 26606000 517560000 407140000 373640000 389750000 323570000 324720000 324460000 376810000 108 108 48 108 108 108 108 108 108 107 108 569320000000 286000000000 283320000000 1364 539 1288 7250;7251;7252;7253;7254;7255;7256;7257;7258;7259;7260;7261;7262;7263;7264;7265;7266;7267;7268;7269;7270;7271;7272;7273;7274;7275;7276;7277;7278;7279;7280;7281;7282;7283;7284;7285;7286;7287;7288;7289;7290;7291;7292;7293;7294;7295;7296;7297;7298;7299;7300;7301;7302;7303;7304;7305;7306;7307;7308;7309;7310;7311;7312;7313;7314;7315;7316;7317;7318;7319;7320;7321;7322;7323;7324;7325;7326;7327;7328;7329;7330;7331;7332;7333;7334;7335;7336;7337;7338;7339;7340;7341;7342;7343;7344;7345;7346;7347;7348;7349;7350;7351;7352;7353;7354;7355;7356;7357;7358;7359;7360;7361;7362;7363;7364;7365;7366;7367;7368;7369;7370;7371;7372;7373;7374;7375;7376;7377;7378;7379;7380;7381;7382;7383;7384;7385;7386;7387;7388;7389;7390;7391;7392;7393;7394;7395;7396;7397;7398;7399;7400;7401;7402;7403;7404;7405;7406;7407;7408;7409;7410;7411;7412;7413;7414;7415;7416;7417;7418;7419;7420;7421;7422;7423;7424;7425;7426;7427;7428;7429;7430;7431;7432;7433;7434;7435;7436;7437;7438;7439;7440;7441;7442;7443;7444;7445;7446;7447;7448;7449;7450;7451;7452;7453;7454;7455;7456;7457;7458;7459;7460;7461;7462;7463;7464;7465;7466;7467;7468;7469;7470;7471;7472;7473;7474;7475;7476;7477;7478;7479;7480;7481;7482;7483;7484;7485;7486;7487;7488;7489;7490;7491;7492;7493;7494;7495;7496;7497;7498;7499;7500;7501;7502;7503;7504;7505;7506;7507;7508;7509;7510;7511;7512;7513;7514;7515;7516;7517;7518;7519;7520;7521;7522;7523;7524;7525;7526;7527;7528;7529;7530;7531;7532;7533;7534;7535;7536;7537;7538;7539;7540;7541;7542;7543;7544;7545;7546;7547;7548;7549;7550;7551;7552;7553;7554;7555;7556;7557;7558;7559;7560;7561;7562;7563;7564;7565;7566;7567;7568;7569;7570;7571;7572;7573;7574;7575;7576;7577;7578;7579;7580;7581;7582;7583;7584 8841;8842;8843;8844;8845;8846;8847;8848;8849;8850;8851;8852;8853;8854;8855;8856;8857;8858;8859;8860;8861;8862;8863;8864;8865;8866;8867;8868;8869;8870;8871;8872;8873;8874;8875;8876;8877;8878;8879;8880;8881;8882;8883;8884;8885;8886;8887;8888;8889;8890;8891;8892;8893;8894;8895;8896;8897;8898;8899;8900;8901;8902;8903;8904;8905;8906;8907;8908;8909;8910;8911;8912;8913;8914;8915;8916;8917;8918;8919;8920;8921;8922;8923;8924;8925;8926;8927;8928;8929;8930;8931;8932;8933;8934;8935;8936;8937;8938;8939;8940;8941;8942;8943;8944;8945;8946;8947;8948;8949;8950;8951;8952;8953;8954;8955;8956;8957;8958;8959;8960;8961;8962;8963;8964;8965;8966;8967;8968;8969;8970;8971;8972;8973;8974;8975;8976;8977;8978;8979;8980;8981;8982;8983;8984;8985;8986;8987;8988;8989;8990;8991;8992;8993;8994;8995;8996;8997;8998;8999;9000;9001;9002;9003;9004;9005;9006;9007;9008;9009;9010;9011;9012;9013;9014;9015;9016;9017;9018;9019;9020;9021;9022;9023;9024;9025;9026;9027;9028;9029;9030;9031;9032;9033;9034;9035;9036;9037;9038;9039;9040;9041;9042;9043;9044;9045;9046;9047;9048;9049;9050;9051;9052;9053;9054;9055;9056;9057;9058;9059;9060;9061;9062;9063;9064;9065;9066;9067;9068;9069;9070;9071;9072;9073;9074;9075;9076;9077;9078;9079;9080;9081;9082;9083;9084;9085;9086;9087;9088;9089;9090;9091;9092;9093;9094;9095;9096;9097;9098;9099;9100;9101;9102;9103;9104;9105;9106;9107;9108;9109;9110;9111;9112;9113;9114;9115;9116;9117;9118;9119;9120;9121;9122;9123;9124;9125;9126;9127;9128;9129;9130;9131;9132;9133;9134;9135;9136;9137;9138;9139;9140;9141;9142;9143;9144;9145;9146;9147;9148;9149;9150;9151;9152;9153;9154;9155;9156;9157;9158;9159;9160;9161;9162;9163;9164;9165;9166;9167;9168;9169;9170;9171;9172;9173;9174;9175;9176;9177;9178;9179;9180;9181;9182;9183;9184;9185;9186;9187;9188;9189;9190;9191;9192;9193;9194;9195;9196;9197;9198;9199;9200;9201;9202;9203;9204;9205;9206;9207 9023 367 ALVADSHPESER Unmodified 1309.6262 0.62624295 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 28.872 28.703 3 4.4109E-09 7030 20211116_3429_TMUAki_TMT10x_P_F2 145.31 123.94 324920 521700 7722.7 516500 446450 505080 353500 283830 321460 293950 422860 302580 486790 35002 527120 426160 510270 362440 300050 332030 286670 404780 3 3 2 3 3 3 3 3 3 3 3 188920 288670 1303.7 283310 290590 359640 201840 152950 194560 179590 231650 175910 269340 17466 290540 276420 357030 209150 166740 199560 174300 222320 2 2 1 2 2 2 2 2 2 2 2 136000 233040 6419.1 233200 155870 145440 151660 130880 126900 114360 191210 126680 217450 17536 236570 149730 153250 153290 133310 132470 112370 182460 1 1 1 1 1 1 1 1 1 1 1 23587000 14547000 9039100 1365 1475 1289 7585;7586;7587;7588 9208;9209;9210;9211 9209 4 ALVAIGTHDLDTLSGPFTYTAK Unmodified 2290.1845 0.18451289 2941 Q9NSD9;Q9NSD9-2 FARSB Phenylalanine--tRNA ligase beta subunit yes no 0 0 0 0 By matching By MS/MS 7.5 0.5 1 1 1 1 77.241 77.253 3 4.6537E-21 24688 20211116_3447_TMUAki_TMT10x_S_F8 159.95 149.34 4994900 8263400 0 6975600 7283800 6217500 6521300 6602000 5848200 6324000 5969400 4650300 7705800 396940 7195900 6961600 6389400 6633900 6684800 5983300 6187800 5754700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4994900 8263400 0 6975600 7283800 6217500 6521300 6602000 5848200 6324000 5969400 4650300 7705800 396940 7195900 6961600 6389400 6633900 6684800 5983300 6187800 5754700 1 1 0 1 1 1 1 1 1 1 1 2128700000 667140000 1461500000 1366 2941 1290 7589;7590 9212 9212 1 ALVATPGK Unmodified 755.45414 0.45413923 729 P19338 NCL Nucleolin yes yes 0 0 0 0 By MS/MS By MS/MS 7.1 0.831 3 3 4 5 5 37.871 38.123 2;3 0.0054798 10648 20211116_3435_TMUAki_TMT10x_P_F7 77.674 54.117 3756900 6712700 12096 6647900 6541200 5532100 4523400 2967900 3403000 3205200 4555200 3498100 6263400 357190 6769800 6221700 5646900 4659100 3154100 3551900 3120600 4358600 8 8 5 8 8 8 8 8 8 8 8 2394300 3935800 4000.2 3858300 4609400 4333100 2971100 1931800 2126200 2036900 2783300 2229400 3672200 228700 3948700 4378500 4331000 3073300 2088500 2223400 1985000 2664600 5 5 2 5 5 5 5 5 5 5 5 1362600 2776900 8095.4 2789600 1931800 1199000 1552300 1036100 1276800 1168400 1772000 1268800 2591200 128480 2821100 1843200 1315900 1585900 1065600 1328500 1135600 1694000 3 3 3 3 3 3 3 3 3 3 3 281510000 180490000 101020000 1367 729 1291 7591;7592;7593;7594;7595;7596;7597;7598;7599;7600 9213;9214;9215;9216;9217;9218;9219;9220;9221;9222 9215 10 ALVATPGKK Unmodified 883.5491 0.54910224 729 P19338 NCL Nucleolin yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.632 1 3 1 3 2 33.054 32.929 3 2.1258E-05 8039 20211116_3428_TMUAki_TMT10x_P_F1 105.36 85.655 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1368 729 1292 7601;7602;7603;7604;7605 9223;9224;9225;9226;9227 9223 5 ALVAYYQK Unmodified 954.51747 0.51746776 1340 P62249 RPS16 40S ribosomal protein S16 yes yes 0 0 0 0 By MS/MS 1 0 1 1 49.907 49.907 2 0.0015628 13982 20211116_3428_TMUAki_TMT10x_P_F1 146.58 60.73 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1369 1340 1293 7606 9228 9228 1 ALVDELEWEIAQVDPKK Unmodified 1982.0361 0.03605774 3237 Q9Y2B0;Q9Y2B0-2 CNPY2 Protein canopy homolog 2 yes no 0 0 0 1 By matching By MS/MS 1 0 2 1 1 79.85 79.831 4 2.3287E-05 28154 20211116_3439_TMUAki_TMT10x_S_F1 84.14 66.223 919390 1639400 8617.4 1630100 1152000 964680 1205700 709600 719090 818310 1133700 856110 1529700 87512 1653700 1106400 1018100 1205200 737600 767550 794720 1080800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 919390 1639400 8617.4 1630100 1152000 964680 1205700 709600 719090 818310 1133700 856110 1529700 87512 1653700 1106400 1018100 1205200 737600 767550 794720 1080800 1 1 1 1 1 1 1 1 1 1 1 876390000 449680000 426720000 1370 3237 1294 7607;7608 9229 9229 1 ALVDGPCTQVR Unmodified 1214.6078 0.60775611 1145 P50914 RPL14 60S ribosomal protein L14 yes yes 0 0 0 0 By MS/MS By MS/MS 4.62 1.45 2 1 5 2 5 1 6 10 36.062 36.112 2;3 8.9751E-30 9493 20211116_3431_TMUAki_TMT10x_P_F4 265.58 207.35 8500100 13672000 63475 15931000 20117000 14687000 9897500 10793000 12549000 8705700 12823000 7914500 12766000 873050 16074000 19034000 14952000 10656000 11108000 12661000 8588400 12361000 20 20 10 20 20 20 20 20 20 20 20 4747700 7540800 48688 8772100 16686000 11887000 6354500 6096300 7083600 4809200 6982000 4420900 7041000 606200 8908600 15743000 11787000 7008500 6452000 7170800 4750000 6738400 4 4 4 4 4 4 4 4 4 4 4 3752400 6131300 14787 7159200 3431100 2800600 3542900 4696700 5465900 3896500 5840700 3493600 5725000 266850 7165800 3290800 3164500 3647400 4655700 5489800 3838500 5622700 16 16 6 16 16 16 16 16 16 16 16 2329700000 1704500000 625130000 1371 1145 1295 7609;7610;7611;7612;7613;7614;7615;7616;7617;7618;7619;7620;7621;7622;7623;7624 9230;9231;9232;9233;9234;9235;9236;9237;9238;9239;9240;9241;9242;9243;9244;9245;9246;9247;9248;9249;9250;9251;9252;9253 9231 24 ALVDHENVISCPHLGASTK Unmodified 2047.0157 0.015673424 201 O43175 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 0 By MS/MS By MS/MS 5.7 1.19 2 2 4 1 1 6 4 42.405 42.563 3;4 1.0283E-31 10648 20211116_3445_TMUAki_TMT10x_S_F6 191.64 168.78 24121000 38650000 262950 53844000 63014000 73186000 33581000 39477000 44228000 39107000 39572000 22461000 36122000 2350600 54146000 59696000 72607000 35931000 41828000 44363000 38209000 38318000 12 12 9 12 12 12 12 12 12 12 12 16816000 26348000 155530 37122000 57960000 67048000 28797000 28195000 30613000 28044000 27496000 15658000 24625000 1851100 37557000 54850000 65585000 30791000 30623000 30954000 27395000 26621000 8 8 6 8 8 8 8 8 8 8 8 7305500 12303000 107420 16722000 5054200 6138000 4784300 11282000 13614000 11063000 12077000 6802900 11496000 499550 16589000 4845900 7021400 5140400 11205000 13409000 10814000 11698000 4 4 3 4 4 4 4 4 4 4 4 8467700000 6673400000 1794300000 1372 201 1296 7625;7626;7627;7628;7629;7630;7631;7632;7633;7634 9254;9255;9256;9257;9258;9259;9260;9261;9262;9263;9264;9265 9265 12 ALVEEALAQR Unmodified 1098.6033 0.60332266 2854 Q9HB07 C12orf10 UPF0160 protein MYG1, mitochondrial yes yes 0 0 0 0 By MS/MS 4 0 1 1 53.239 53.403 2 0.00057418 15801 20211116_3431_TMUAki_TMT10x_P_F4 103.82 64.676 4172900 7391000 0 7689900 8493800 10811000 6005500 6370100 6255600 5434700 6592600 3885200 6897700 379310 7870500 8079900 10722000 6229500 6672800 6365000 5346300 6349200 1 1 0 1 1 1 1 1 1 1 1 4172900 7391000 0 7689900 8493800 10811000 6005500 6370100 6255600 5434700 6592600 3885200 6897700 379310 7870500 8079900 10722000 6229500 6672800 6365000 5346300 6349200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 490040000 490040000 0 1373 2854 1297 7635 9266 9266 1 ALVEFESNPEETREPGSPPSVQR Unmodified 2554.23 0.22995953 2816 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 yes yes 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 48.496 48.549 3 1.0804E-125 14237 20211116_3442_TMUAki_TMT10x_S_F4 323.79 307.03 740910 1280100 0 1361400 1603200 2172900 1243300 1330800 1270000 1145200 1161300 689700 1194800 52895 1395200 1526800 2144600 1280800 1390000 1287000 1126100 1123600 1 1 0 1 1 1 1 1 1 1 1 740910 1280100 0 1361400 1603200 2172900 1243300 1330800 1270000 1145200 1161300 689700 1194800 52895 1395200 1526800 2144600 1280800 1390000 1287000 1126100 1123600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 617520000 297050000 320470000 1374 2816 1298 7636;7637;7638 9267;9268 9268 2 ALVENCLVPDLWIR Unmodified 1696.8971 0.89706184 1753 Q15020;Q15020-4;Q15020-2 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 0 0 0 0 By MS/MS 7 0 1 1 79.147 79.196 2 0.00014542 27910 20211116_3446_TMUAki_TMT10x_S_F7 84.718 66.406 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1375 1753 1299 7639 9269 9269 1 ALVHERDEAAYGELR Unmodified 1727.8591 0.85909643 3166 Q9UL46 PSME2 Proteasome activator complex subunit 2 yes yes 0 0 0 1 By MS/MS By MS/MS 2.75 0.968 1 2 3 2 5 3 33.919 33.808 3;4 3.928E-38 9002 20211116_3429_TMUAki_TMT10x_P_F2 252.36 186.09 4671400 7681700 66315 8431800 9023000 9257800 5488000 6766100 6885600 6567400 7016900 4349900 7170600 499190 8561200 8566100 9324300 5794800 6999100 6948400 6422200 6764900 8 8 6 8 8 8 8 8 8 8 8 3052700 4890700 37083 5356100 7493500 7792200 3852900 4301600 4274600 4304500 4430200 2842500 4565200 341070 5467700 7095300 7709500 4111500 4549800 4335700 4203900 4268800 4 4 3 4 4 4 4 4 4 4 4 1618700 2791000 29232 3075700 1529500 1465600 1635100 2464500 2611000 2262900 2586700 1507400 2605400 158110 3093500 1470800 1614800 1683300 2449300 2612700 2218400 2496100 4 4 3 4 4 4 4 4 4 4 4 1211800000 818720000 393030000 1376 3166 1300 7640;7641;7642;7643;7644;7645;7646;7647 9270;9271;9272;9273;9274;9275;9276;9277 9271 8 ALVILAK Unmodified 726.50036 0.50036114 2578 Q99497 PARK7 Protein deglycase DJ-1 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 58.961 58.721 2 0.001158 17550 20211116_3428_TMUAki_TMT10x_P_F1 140.79 96.674 38117000 63045000 601040 54141000 59792000 76872000 48382000 88515000 56755000 63615000 61365000 35494000 58794000 3911900 56201000 57074000 77172000 49931000 88663000 57536000 63156000 59054000 8 8 5 8 8 8 8 8 8 8 8 18534000 29488000 54175 24592000 30141000 48998000 24096000 47599000 24555000 31762000 28574000 17257000 27497000 1710500 25798000 28749000 48379000 24772000 47992000 25103000 31673000 27440000 3 3 1 3 3 3 3 3 3 3 3 19583000 33556000 546870 29549000 29651000 27874000 24285000 40916000 32200000 31853000 32791000 18238000 31297000 2201400 30403000 28324000 28793000 25159000 40671000 32433000 31483000 31614000 5 5 4 5 5 5 5 5 5 5 5 3772300000 2167200000 1605000000 1377 2578 1301 7648;7649;7650;7651;7652;7653 9278;9279;9280;9281;9282;9283;9284;9285 9278 8 ALVISGR Unmodified 714.43882 0.43882351 2294 Q8WU90;Q8WU90-2 ZC3H15 Zinc finger CCCH domain-containing protein 15 yes no 0 0 0 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 2 2 33.777 34.145 2 0.015467 7291 20211116_3447_TMUAki_TMT10x_S_F8 92.822 29.259 1316200 2122300 0 1843900 1658900 1881800 1416800 1252800 1461100 1236500 1578000 1225300 1979300 79316 1901400 1583000 1900600 1451200 1305000 1488700 1208300 1518600 4 4 0 4 4 4 4 4 4 4 4 960950 1511500 0 1310100 1256600 1462600 980680 707580 771320 745420 1053200 894550 1409600 60762 1353100 1196400 1463600 1002700 758660 803850 726460 1007300 2 2 0 2 2 2 2 2 2 2 2 355210 610840 0 533810 402300 419190 436130 545190 689820 491070 524800 330730 569690 18554 548300 386540 436950 448470 546330 684820 481830 511360 2 2 0 2 2 2 2 2 2 2 2 109800000 57734000 52064000 1378 2294 1302 7654;7655;7656;7657 9286;9287;9288;9289 9289 4 ALVIVMGK Unmodified 829.50955 0.50954561 921 P35080-2 PFN2 Profilin-2 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 62.262 61.907 2 0.00042628 20929 20211116_3430_TMUAki_TMT10x_P_F3 168.43 128.89 21878000 33224000 102170 40814000 27403000 22049000 22175000 14000000 12075000 15171000 24949000 20371000 31030000 1944400 40821000 26147000 23438000 22454000 14675000 13183000 14769000 23669000 3 3 2 3 3 3 3 3 3 3 3 6920400 9849300 0 12072000 10990000 10590000 8154000 4369800 3839000 4456100 7267200 6443300 9198800 588750 12136000 10464000 10740000 8285700 4759500 4216000 4348500 6904200 1 1 0 1 1 1 1 1 1 1 1 14957000 23374000 102170 28743000 16412000 11459000 14021000 9630000 8236500 10715000 17682000 13927000 21831000 1355600 28685000 15683000 12698000 14168000 9915900 8967500 10420000 16765000 2 2 2 2 2 2 2 2 2 2 2 789300000 350540000 438760000 1379 921 1303 7658;7659 9290;9291;9292 9290 3 ALVLDCHYPEDEVGQEDEAESDIFSIR Unmodified 3135.3979 0.39788908 1535 Q07021 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 1.98 0.713 13 29 10 1 37 16 43.419 43.325 3;4 1.4995E-33 25111 20211116_3440_TMUAki_TMT10x_S_F2 174.99 165.4 56550000 94159000 687490 89057000 60732000 90032000 69560000 58125000 54861000 60438000 72753000 52657000 87842000 4454800 91228000 58476000 90942000 69641000 60776000 57089000 58931000 69628000 72 73 26 74 71 74 74 72 73 73 74 36562000 60111000 583550 58037000 32803000 64637000 42720000 36779000 33815000 37437000 45530000 34047000 56082000 3034000 59452000 31731000 64815000 42539000 38819000 35206000 36536000 43559000 53 54 19 55 52 55 55 53 54 54 55 19988000 34049000 103940 31021000 27930000 25395000 26840000 21345000 21046000 23000000 27223000 18610000 31760000 1420700 31776000 26745000 26127000 27102000 21956000 21884000 22395000 26069000 19 19 7 19 19 19 19 19 19 19 19 43102000000 22185000000 20917000000 1380 1535 1304 7660;7661;7662;7663;7664;7665;7666;7667;7668;7669;7670;7671;7672;7673;7674;7675;7676;7677;7678;7679;7680;7681;7682;7683;7684;7685;7686;7687;7688;7689;7690;7691;7692;7693;7694;7695;7696;7697;7698;7699;7700;7701;7702;7703;7704;7705;7706;7707;7708;7709;7710;7711;7712 9293;9294;9295;9296;9297;9298;9299;9300;9301;9302;9303;9304;9305;9306;9307;9308;9309;9310;9311;9312;9313;9314;9315;9316;9317;9318;9319;9320;9321;9322;9323;9324;9325;9326;9327;9328;9329;9330;9331;9332;9333;9334;9335;9336;9337;9338;9339;9340;9341;9342;9343;9344;9345;9346;9347;9348;9349;9350;9351;9352;9353;9354;9355;9356;9357;9358;9359;9360;9361;9362;9363;9364;9365;9366;9367;9368 9363 76 ALVLELCCNDESGEDVEVPYVR Unmodified 2565.1727 0.17270393 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 5 2 3 84.47 84.458 3 2.6522E-05 27278 20211116_3439_TMUAki_TMT10x_S_F1 75.358 67.044 2194100 3929200 0 3403700 3131500 3041800 2804100 2373800 2143400 2604300 3001000 2042800 3664400 175380 3504000 2993200 3106100 2840900 2454100 2239900 2534000 2868400 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2194100 3929200 0 3403700 3131500 3041800 2804100 2373800 2143400 2604300 3001000 2042800 3664400 175380 3504000 2993200 3106100 2840900 2454100 2239900 2534000 2868400 2 2 0 2 2 2 2 2 2 2 2 1049000000 767530000 281450000 1381 769 1305 7713;7714;7715;7716;7717 9369;9370;9371;9372 9370 4 ALVLPSPRPYVR Unmodified 1366.8085 0.80850483 724 P18858;P18858-3 LIG1 DNA ligase 1 yes no 0 0 0 1 By MS/MS 5 0 1 1 47.729 47.902 3 0.00021828 12662 20211116_3444_TMUAki_TMT10x_S_F5 88.338 51.813 1682300 2905100 4903.7 2922700 1699800 1461800 1428700 2329200 2169600 1999300 2401600 1566400 2710800 144290 2958600 1623300 1598800 1486300 2314500 2183000 1966200 2309500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1682300 2905100 4903.7 2922700 1699800 1461800 1428700 2329200 2169600 1999300 2401600 1566400 2710800 144290 2958600 1623300 1598800 1486300 2314500 2183000 1966200 2309500 1 1 1 1 1 1 1 1 1 1 1 130370000 0 130370000 1382 724 1306 7718 9373 9373 1 ALVNCQYSSATFSTGER Unmodified 1889.8578 0.8577758 2888 Q9NPD3 EXOSC4 Exosome complex component RRP41 yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 1 3 48.264 48.509 3 1.2141E-15 15289 20211116_3446_TMUAki_TMT10x_S_F7 140.46 133.58 4737000 8330400 55961 9180700 6155600 6512300 4772900 5959000 5815800 5560400 6497400 4411000 7776300 456550 9265900 5870400 6786400 4945900 6074700 5895100 5447000 6246700 3 3 2 3 3 3 3 3 3 3 3 1799500 3276700 0 3473300 3088100 4034900 2204400 2222300 2150400 2107200 2414400 1675500 3058200 159040 3537900 2938300 4035100 2280500 2347500 2199400 2062700 2320900 1 1 0 1 1 1 1 1 1 1 1 2937400 5053700 55961 5707400 3067500 2477400 2568500 3736700 3665400 3453200 4083000 2735500 4718100 297510 5728100 2932100 2751300 2665400 3727200 3695700 3384300 3925800 2 2 2 2 2 2 2 2 2 2 2 797090000 217760000 579320000 1383 2888 1307 7719;7720;7721;7722 9374;9375;9376;9377 9377 4 ALVNHSGLSAPVPR Unmodified 1416.7837 0.78374664 3062 Q9P2D1 CHD7 Chromodomain-helicase-DNA-binding protein 7 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 36.78 36.75 3 5.0938E-15 8682 20211116_3428_TMUAki_TMT10x_P_F1 159.12 112.97 495860 795560 14967 934570 861820 823670 547060 692060 760770 629010 786910 461810 742860 60184 941940 819350 842980 577980 708390 765530 616930 758300 2 2 2 2 2 2 2 2 2 2 2 241120 394040 7660.1 452720 641130 626160 341260 349240 375980 313820 397760 224570 367900 32732 460300 607670 620970 362900 368000 381750 307950 383030 1 1 1 1 1 1 1 1 1 1 1 254740 401510 7306.5 481850 220700 197510 205810 342820 384790 315200 389150 237240 374950 27452 481640 211680 222010 215080 340400 383780 308970 375260 1 1 1 1 1 1 1 1 1 1 1 79878000 48487000 31391000 1384 3062 1308 7723;7724 9378;9379 9378 2 ALVQNDTLLQVK Unmodified 1340.7664 0.76636524 2336 Q92522 H1FX Histone H1x yes yes 0 0 0 0 By MS/MS By MS/MS 7.22 0.987 4 4 11 21 6 34 60.784 60.946 2;3 4.8928E-60 17724 20211116_3434_TMUAki_TMT10x_P_F6 324.55 273.2 71226000 114860000 848240 123840000 112380000 136290000 88914000 111860000 109570000 98466000 106040000 66323000 107210000 6542700 125890000 107200000 137530000 92056000 114570000 110440000 96719000 102400000 32 32 22 32 32 32 32 32 32 32 32 45852000 71351000 515220 77567000 85524000 112840000 65310000 69143000 68009000 61510000 65778000 42696000 66601000 4707700 79219000 81519000 111800000 67387000 72277000 68990000 60388000 63523000 9 9 6 9 9 9 9 9 9 9 9 25373000 43508000 333010 46273000 26852000 23449000 23605000 42722000 41558000 36956000 40261000 23627000 40608000 1835100 46669000 25683000 25729000 24669000 42291000 41446000 36331000 38878000 23 23 16 23 23 23 23 23 23 23 23 10605000000 6845700000 3759700000 1385 2336 1309 7725;7726;7727;7728;7729;7730;7731;7732;7733;7734;7735;7736;7737;7738;7739;7740;7741;7742;7743;7744;7745;7746;7747;7748;7749;7750;7751;7752;7753;7754;7755;7756;7757;7758;7759;7760;7761;7762;7763;7764 9380;9381;9382;9383;9384;9385;9386;9387;9388;9389;9390;9391;9392;9393;9394;9395;9396;9397;9398;9399;9400;9401;9402;9403;9404;9405;9406;9407;9408;9409;9410;9411;9412;9413;9414;9415;9416;9417;9418;9419;9420;9421;9422;9423;9424 9385 45 ALVQSLLAK Unmodified 941.59097 0.59096706 2999 Q9NX46 ADPRHL2 Poly(ADP-ribose) glycohydrolase ARH3 yes yes 0 0 0 0 By MS/MS 4 0 1 1 66.503 66.591 2 3.1236E-05 21180 20211116_3431_TMUAki_TMT10x_P_F4 111.46 34.629 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1386 2999 1310 7765 9425 9425 1 ALVSAQWVAEALR Unmodified 1412.7776 0.77759863 800 P25325;P25325-2 MPST 3-mercaptopyruvate sulfurtransferase yes no 0 0 0 0 By MS/MS 2 0 1 1 77.799 77.749 2 0.00032898 26825 20211116_3429_TMUAki_TMT10x_P_F2 84.479 61.65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1387 800 1311 7766 9426 9426 1 ALVSEWKEPQAK Unmodified 1384.7351 0.73506511 1847 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 1 By MS/MS 7 0 1 1 48.319 48.943 3 4.245E-06 14888 20211116_3435_TMUAki_TMT10x_P_F7 104.59 85.518 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1388 1847 1312 7767 9427 9427 1 ALVSHNGSLINVGSLLQR Unmodified 1877.0483 0.048294182 2181 Q8N163;Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 62.43 62.226 3 9.3725E-41 19826 20211116_3442_TMUAki_TMT10x_S_F4 194.05 170.3 16582000 28246000 368480 27129000 21923000 31061000 18883000 26433000 25062000 24715000 23689000 15441000 26352000 1632700 27814000 20956000 31297000 19504000 27058000 25177000 24208000 22895000 5 5 3 5 5 5 5 5 5 5 5 9166900 15374000 149570 14551000 11745000 21450000 11929000 13466000 12512000 13207000 12463000 8535800 14343000 871810 15006000 11271000 21247000 12109000 14086000 12701000 12909000 12024000 3 3 2 3 3 3 3 3 3 3 3 7415000 12871000 218910 12578000 10178000 9611100 6953700 12967000 12550000 11508000 11227000 6905000 12009000 760920 12808000 9685200 10050000 7395300 12971000 12476000 11300000 10871000 2 2 1 2 2 2 2 2 2 2 2 1838100000 1590100000 248020000 1389 2181 1313 7768;7769;7770;7771 9428;9429;9430;9431;9432;9433 9433 6 ALVTGYFMQVAHLER Oxidation (M) 1749.8872 0.88722543 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 1 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 65.323 65.128 3 8.2831E-07 20523 20211116_3440_TMUAki_TMT10x_S_F2 111.12 94.978 9715900 17089000 251800 14599000 11943000 15602000 12323000 14400000 12905000 13383000 14357000 9048400 15937000 1071400 15084000 11476000 15805000 12498000 14672000 13154000 13113000 13804000 5 5 5 5 5 5 5 5 5 5 5 3556400 6108100 102110 5280600 4273000 8349300 5404900 4859500 4945800 5046200 5195700 3312100 5696400 400040 5491500 4131800 8238000 5409100 5122500 5060500 4920700 5004400 2 2 2 2 2 2 2 2 2 2 2 6159600 10981000 149700 9317900 7670200 7252500 6917900 9541000 7958700 8337100 9161000 5736300 10240000 671340 9592400 7344700 7567200 7088700 9549100 8093700 8192100 8800100 3 3 3 3 3 3 3 3 3 3 3 2714000000 1464300000 1249700000 1390 196 1314 7772;7773;7774;7775 9434;9435;9436;9437;9438 9438 142 5 ALVTGYFMQVAHLER Unmodified 1733.8923 0.89231081 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 72.904 72.651 3 1.7679E-19 26280 20211116_3441_TMUAki_TMT10x_S_F3 166.9 151.15 4427900 8167600 134100 7873000 5848200 7737500 5454300 4574400 4133900 4910800 5548500 4123800 7620200 511980 8050600 5605700 7819700 5512200 4820600 4313500 4782300 5308700 4 4 4 4 4 4 4 4 4 4 4 2615100 4531200 56668 4289400 3071800 5540300 3128600 2588200 2433000 2916000 3041800 2435400 4227200 276020 4411700 2950200 5500600 3148900 2790300 2527200 2834400 2915500 2 2 2 2 2 2 2 2 2 2 2 1812800 3636400 77434 3583600 2776400 2197100 2325700 1986200 1700900 1994800 2506700 1688500 3392900 235960 3638900 2655500 2319100 2363300 2030300 1786300 1947900 2393200 2 2 2 2 2 2 2 2 2 2 2 1314700000 766820000 547850000 1391 196 1314 7776;7777 9439;9440;9441;9442 9441 4 ALVTLSSGDMRR Oxidation (M) 1320.682 0.68198369 990 P40937;P40937-2 RFC5 Replication factor C subunit 5 yes no 0 0 1 1 By matching By MS/MS 1 0 2 1 1 34.307 34.301 3 0.02463 9649 20211116_3439_TMUAki_TMT10x_S_F1 48.741 30.429 242630 413910 5558.4 474710 283330 207900 253570 321660 321310 255180 357080 225950 386450 25866 476000 271260 230800 260860 319310 325180 251960 343360 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 242630 413910 5558.4 474710 283330 207900 253570 321660 321310 255180 357080 225950 386450 25866 476000 271260 230800 260860 319310 325180 251960 343360 1 1 1 1 1 1 1 1 1 1 1 34807000 20907000 13899000 1392 990 1315 7778;7779 9443 9443 1272 1 ALVVEMSRPR Unmodified 1156.6387 0.63866231 2534 Q96PK6;Q96PK6-2;Q96PK6-3;Q96PK6-4 RBM14 RNA-binding protein 14 no no 0 0 0 1 By matching By MS/MS 2 0 2 1 1 37.485 37.415 3 0.00013839 8936 20211116_3440_TMUAki_TMT10x_S_F2 115.78 78.054 222050 327060 0 394950 200720 183000 220020 205050 215980 202950 274310 206740 305440 16850 394950 192860 200000 222040 207300 221970 198300 262810 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 222050 327060 0 394950 200720 183000 220020 205050 215980 202950 274310 206740 305440 16850 394950 192860 200000 222040 207300 221970 198300 262810 1 1 0 1 1 1 1 1 1 1 1 21521000 16369000 5151900 1393 2534 1316 7780;7781 9444 9444 1 ALVVEMSRPRPLNTWK Oxidation (M) 1912.0353 0.035286654 2534 Q96PK6;Q96PK6-2;Q96PK6-3;Q96PK6-4 RBM14 RNA-binding protein 14 no no 0 0 1 2 By matching By MS/MS 4 0 2 1 1 44.564 44.726 4 0.00061767 12671 20211116_3442_TMUAki_TMT10x_S_F4 69.331 51.414 1228000 2372200 19235 2353900 1521200 1233700 1029600 2630600 2483200 1880500 2174200 1143500 2213500 123840 2385900 1447400 1357300 1115100 2581600 2451700 1867500 2106900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1228000 2372200 19235 2353900 1521200 1233700 1029600 2630600 2483200 1880500 2174200 1143500 2213500 123840 2385900 1447400 1357300 1115100 2581600 2451700 1867500 2106900 1 1 1 1 1 1 1 1 1 1 1 598720000 363930000 234780000 1394 2534 1317 7782;7783 9445 9445 2786 1 ALWEDEGVR Unmodified 1073.5142 0.5141733 1393 P63092;Q5JWF2;P63092-4;Q5JWF2-2;P63092-3;P63092-2 GNAS Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 47.665 47.447 2 6.1612E-06 14899 20211116_3430_TMUAki_TMT10x_P_F3 164.77 133.4 10316000 16265000 146920 19026000 20481000 17499000 14728000 10598000 10455000 10106000 14832000 9606400 15187000 1124700 19192000 19502000 17766000 15108000 11108000 10979000 9889900 14173000 4 4 3 4 4 4 4 4 4 4 4 7837400 12494000 141740 13771000 18195000 15857000 12595000 8412500 8199600 8007900 11264000 7298400 11663000 917110 13989000 17314000 15858000 12932000 8916800 8642800 7837600 10772000 3 3 2 3 3 3 3 3 3 3 3 2478700 3770300 5183.4 5255700 2285600 1641300 2133500 2185100 2255500 2097700 3567900 2308000 3523600 207630 5202700 2188000 1907200 2175800 2191600 2335800 2052300 3401200 1 1 1 1 1 1 1 1 1 1 1 392160000 329600000 62558000 1395 1393 1318 7784;7785;7786;7787 9446;9447;9448;9449;9450 9448 5 ALWEETSFQLDR Unmodified 1493.7151 0.71505795 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 0 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 69.281 69.078 2 1.7576E-15 22646 20211116_3442_TMUAki_TMT10x_S_F4 195.4 151.59 17219000 28463000 72996 28337000 19696000 19955000 20093000 13296000 12301000 14140000 20321000 16033000 26558000 1453600 28792000 18895000 20696000 20119000 13880000 13140000 13775000 19355000 5 5 3 5 5 5 5 5 5 5 5 6747600 10562000 15467 10150000 7050900 11072000 8234300 5348800 4717000 5532300 7659900 6282800 9854200 578090 10398000 6791400 11094000 8181700 5732600 5057100 5395600 7298100 2 2 2 2 2 2 2 2 2 2 2 10472000 17901000 57528 18187000 12645000 8883300 11859000 7947300 7583800 8607700 12661000 9750000 16704000 875490 18394000 12103000 9602600 11938000 8147300 8082500 8379500 12057000 3 3 1 3 3 3 3 3 3 3 3 1539700000 818410000 721290000 1396 157 1319 7788;7789;7790;7791;7792 9451;9452;9453;9454;9455;9456 9454 6 ALWFQGR Unmodified 876.46062 0.46062159 1026 P43243;P43243-2 MATR3 Matrin-3 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 53.885 53.897 2 0.0022968 17660 20211116_3430_TMUAki_TMT10x_P_F3 127.54 97.312 6466300 9842800 5867.2 11264000 12036000 11254000 7611700 6450500 5436100 6055500 8275200 6020500 9189700 572320 11391000 11427000 11357000 7884800 6789000 5726200 5930400 7894800 2 2 1 2 2 2 2 2 2 2 2 4414400 6221400 0 7531500 9567900 9802800 6005400 3912700 3515200 3947500 5323100 4109800 5810100 390900 7624800 9081500 9714000 6200800 4276500 3749200 3853900 5079100 1 1 0 1 1 1 1 1 1 1 1 2052000 3621500 5867.2 3732600 2468500 1450900 1606200 2537800 1920900 2108000 2952000 1910600 3379600 181420 3765900 2345600 1643200 1684100 2512500 1977000 2076500 2815800 1 1 1 1 1 1 1 1 1 1 1 656390000 505810000 150580000 1397 1026 1320 7793;7794;7795;7796 9457;9458;9459 9457 3 ALWHGIYMPK Oxidation (M) 1230.6219 0.62194961 2086 Q7Z5J8;Q7Z5J8-2 ANKAR Ankyrin and armadillo repeat-containing protein yes no 0 0 1 0 By MS/MS By MS/MS 8 0 2 1 1 70.796 70.741 2 0.013694 22024 20211116_3447_TMUAki_TMT10x_S_F8 68.422 7.0585 7921000 12349000 0 11311000 8458700 10643000 9620600 7057400 6737200 6905600 8689000 7374700 11519000 586440 11603000 8134700 10803000 9608500 7351900 7049400 6750600 8321600 2 2 0 2 2 2 2 2 2 2 2 4092600 6417900 0 5411200 3344000 6485500 4739500 3586100 3625800 3495200 4263200 3810100 5984800 266710 5607400 3237500 6475600 4700000 3789700 3759900 3417300 4092800 1 1 0 1 1 1 1 1 1 1 1 3828400 5931500 0 5900300 5114600 4157100 4881100 3471300 3111400 3410400 4425800 3564500 5534600 319730 5995400 4897300 4327100 4908500 3562200 3289400 3333300 4228700 1 1 0 1 1 1 1 1 1 1 1 1352100000 641430000 710630000 1398 2086 1321 7797;7798 9460;9461 9461 2591 2 ALYDTFSAFGNILSCK Unmodified 1805.8658 0.86582129 634;1619 P11940;P11940-2;Q13310;Q13310-2;Q13310-3 PABPC1;PABPC4 Polyadenylate-binding protein 1;Polyadenylate-binding protein 4 no no 0 0 0 0 By MS/MS By MS/MS 3.07 0.961 1 3 4 6 8 6 81.078 81.06 2;3 5.9339E-60 27127 20211116_3431_TMUAki_TMT10x_P_F4 287.29 262.44 255580000 416720000 745740 387780000 284900000 355500000 296210000 219090000 169620000 234890000 275810000 237950000 388730000 19545000 397160000 273330000 361090000 295950000 230110000 181860000 228760000 262770000 15 15 3 15 15 15 15 15 15 15 15 136280000 213630000 483490 193180000 118820000 227990000 141580000 112860000 86425000 119300000 141510000 126880000 199260000 9714900 199040000 114420000 227530000 140720000 120750000 92291000 116240000 134800000 5 5 1 5 5 5 5 5 5 5 5 119300000 203090000 262250 194600000 166080000 127510000 154630000 106240000 83190000 115600000 134300000 111070000 189470000 9830400 198120000 158910000 133560000 155240000 109370000 89571000 112510000 127970000 10 10 2 10 10 10 10 10 10 10 10 56810000000 24883000000 31928000000 1399 634;1619 1322 7799;7800;7801;7802;7803;7804;7805;7806;7807;7808;7809;7810;7811;7812 9462;9463;9464;9465;9466;9467;9468;9469;9470;9471;9472;9473;9474;9475;9476;9477;9478;9479;9480 9468 19 ALYDYEGQEHDELSFK Unmodified 1942.8585 0.85848731 3190 Q9UNF0;Q9UNF0-2 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 58.774 58.6 3 1.2032E-10 19592 20211116_3430_TMUAki_TMT10x_P_F3 126.63 111.71 24776000 43497000 103930 44504000 34669000 48463000 31250000 33957000 34969000 35322000 34477000 23068000 40591000 2171700 45389000 33155000 48801000 31992000 35298000 35394000 34441000 33274000 6 6 3 6 6 6 6 6 6 6 6 16089000 28257000 63652 28517000 26125000 40447000 24334000 22738000 22512000 23068000 22782000 14981000 26368000 1488600 29252000 25006000 40071000 24720000 24022000 22991000 22516000 21968000 4 4 2 4 4 4 4 4 4 4 4 8686200 15240000 40278 15987000 8543700 8016300 6916600 11218000 12457000 12254000 11695000 8087400 14223000 683120 16137000 8148900 8730100 7272400 11275000 12403000 11925000 11306000 2 2 1 2 2 2 2 2 2 2 2 3359500000 2159200000 1200300000 1400 3190 1323 7813;7814;7815;7816;7817;7818 9481;9482;9483;9484;9485;9486;9487 9482 7 ALYEHLTAK Unmodified 1044.5604 0.56039521 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 6.75 0.433 1 3 2 2 40.012 40.436 3 2.9972E-05 11820 20211116_3435_TMUAki_TMT10x_P_F7 104.01 59.15 2978700 4762800 30812 5112000 4849900 4070100 3300400 2842000 3259000 2708700 3402100 2773600 4445500 292960 5174800 4612600 4183000 3427500 2947500 3322400 2651000 3277500 3 3 2 3 3 3 3 3 3 3 3 1476400 2314100 15719 2636100 3156300 2632400 1597800 1553000 1760000 1408100 1665200 1374800 2160500 160580 2666400 2988100 2657700 1707300 1629100 1780000 1381200 1609300 1 1 1 1 1 1 1 1 1 1 1 1502200 2448700 15094 2475900 1693600 1437700 1702600 1289000 1499100 1300600 1737000 1398800 2285000 132370 2508400 1624500 1525300 1720300 1318400 1542400 1269800 1668200 2 2 1 2 2 2 2 2 2 2 2 297830000 229750000 68076000 1401 1018 1324 7819;7820;7821;7822 9488;9489;9490;9491 9489 4 ALYESELADAR Unmodified 1236.5986 0.59863121 1505 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 0 By MS/MS 1 0 1 1 46.539 46.539 2 0.0030367 12619 20211116_3428_TMUAki_TMT10x_P_F1 76.815 38.576 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1402 1505 1325 7823 9492 9492 1 ALYESELADARR Unmodified 1392.6997 0.69974224 1505 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 1 By MS/MS By MS/MS 3.27 1.05 1 2 1 7 3 8 38.236 38.185 3 1.2957E-30 12567 20211116_3441_TMUAki_TMT10x_S_F3 263.07 219.39 11352000 18333000 100440 21039000 20547000 18112000 13819000 15452000 15971000 12716000 17002000 10570000 17117000 1084700 21229000 19533000 18572000 14436000 15763000 16191000 12532000 16370000 9 9 6 9 9 9 9 9 9 9 9 5653200 8520900 50690 10496000 15103000 13637000 8438100 8323500 8425000 6686900 8381000 5263600 7958300 587370 10615000 14313000 13579000 8907200 8682000 8570000 6598200 8086200 4 4 2 4 4 4 4 4 4 4 4 5698900 9812500 49751 10543000 5444000 4475400 5381300 7128200 7546300 6029000 8621400 5306500 9158800 497300 10614000 5220200 4993100 5528800 7080700 7620500 5933600 8283400 5 5 4 5 5 5 5 5 5 5 5 1174000000 701340000 472690000 1403 1505 1326 7824;7825;7826;7827;7828;7829;7830;7831;7832;7833;7834 9493;9494;9495;9496;9497;9498;9499;9500;9501;9502;9503;9504;9505;9506 9499 14 ALYETELADAR Unmodified 1250.6143 0.61428128 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.12 1.05 3 2 2 1 3 5 48.383 48.263 2 2.032E-16 15204 20211116_3430_TMUAki_TMT10x_P_F3 215.93 114.39 23592000 38703000 82567 47637000 30639000 33589000 22427000 37528000 43129000 35730000 37803000 21966000 36147000 1969800 47757000 29166000 35174000 23819000 37903000 42782000 34970000 36632000 10 10 3 10 10 10 10 10 10 10 10 6938100 10680000 8560.9 12916000 18102000 20498000 11134000 10737000 12873000 10123000 9936200 6459800 9974100 702460 13132000 17180000 20195000 11712000 11391000 12915000 9912000 9676000 3 3 1 3 3 3 3 3 3 3 3 16654000 28023000 74006 34721000 12537000 13091000 11294000 26791000 30256000 25607000 27867000 15506000 26173000 1267300 34625000 11986000 14978000 12108000 26512000 29866000 25058000 26956000 7 7 2 7 7 7 7 7 7 7 7 5112600000 2919100000 2193500000 1404 748 1327 7835;7836;7837;7838;7839;7840;7841;7842 9507;9508;9509;9510;9511;9512;9513;9514;9515;9516;9517 9508 11 ALYETELADARR Unmodified 1406.7154 0.7153923 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 1 By MS/MS By MS/MS 3.36 1.44 2 2 3 4 2 1 6 8 38.826 38.815 2;3 1.6088E-39 10400 20211116_3431_TMUAki_TMT10x_P_F4 294.4 231.08 41848000 59279000 239760 64365000 102240000 90247000 55629000 66185000 76454000 53967000 64607000 38963000 55333000 4106900 65691000 96850000 89800000 59509000 68141000 76447000 53211000 62691000 18 18 12 18 18 18 18 18 18 18 18 33487000 45463000 43929 48752000 93953000 83170000 48332000 51255000 60329000 42180000 51074000 31176000 42434000 3232200 50017000 88915000 81888000 51782000 53452000 60521000 41569000 49555000 8 8 2 8 8 8 8 8 8 8 8 8360800 13816000 195830 15613000 8289300 7077000 7297000 14930000 16125000 11788000 13534000 7786200 12899000 874670 15674000 7935100 7912600 7726900 14689000 15926000 11642000 13136000 10 10 10 10 10 10 10 10 10 10 10 8555800000 5587000000 2968800000 1405 748 1328 7843;7844;7845;7846;7847;7848;7849;7850;7851;7852;7853;7854;7855;7856 9518;9519;9520;9521;9522;9523;9524;9525;9526;9527;9528;9529;9530;9531;9532;9533;9534;9535 9521 18 ALYLIATNGTPELQNPEK Unmodified 1971.0313 0.031306714 1606;1602 Q13177;Q13153;Q13153-2 PAK2;PAK1 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34;Serine/threonine-protein kinase PAK 1 no no 0 0 0 0 By MS/MS By MS/MS 7.6 0.49 2 3 2 3 70.873 71.107 3 1.429E-17 22747 20211116_3436_TMUAki_TMT10x_P_F8 150.76 132.85 24778000 45103000 417690 38219000 31146000 44849000 30840000 36387000 37662000 38271000 36462000 23074000 42060000 2522400 39575000 29881000 45090000 31510000 37479000 37974000 37300000 35211000 6 6 4 6 6 6 6 6 6 6 6 11210000 19561000 242190 16770000 12672000 26192000 14907000 16567000 17663000 17080000 16472000 10439000 18242000 1175600 17446000 12222000 25885000 15089000 17345000 17806000 16660000 15927000 3 3 3 3 3 3 3 3 3 3 3 13568000 25542000 175500 21449000 18474000 18657000 15933000 19820000 20000000 21191000 19990000 12634000 23818000 1346800 22129000 17659000 19205000 16421000 20134000 20168000 20640000 19284000 3 3 1 3 3 3 3 3 3 3 3 2912800000 2064900000 847950000 1406 1606;1602 1329 7857;7858;7859;7860;7861 9536;9537;9538;9539;9540;9541;9542;9543 9537 8 ALYLSDNDFEILPPDIGK Unmodified 2019.0201 0.020073325 1801 Q15404;Q15404-2 RSU1 Ras suppressor protein 1 yes no 0 0 0 0 By MS/MS 6 0 1 1 79.585 79.577 3 3.6398E-05 25928 20211116_3445_TMUAki_TMT10x_S_F6 82.007 66.241 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1407 1801 1330 7862 9544 9544 1 ALYPGALGRPPPMPPMNFDPR 2 Oxidation (M) 2325.1398 0.13982808 1077 P48634;P48634-2;P48634-3;P48634-4 PRRC2A Protein PRRC2A yes no 0 0 2 1 By MS/MS 2 0 1 1 55.757 55.552 3 0.0067852 16602 20211116_3440_TMUAki_TMT10x_S_F2 55.33 44.696 1626800 2945400 26581 2870100 1847200 1894400 1627500 2863000 2702700 2635500 2681800 1514900 2748100 162740 2918700 1767300 2011800 1695700 2855200 2701800 2583300 2587700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1626800 2945400 26581 2870100 1847200 1894400 1627500 2863000 2702700 2635500 2681800 1514900 2748100 162740 2918700 1767300 2011800 1695700 2855200 2701800 2583300 2587700 2 2 2 2 2 2 2 2 2 2 2 244120000 0 244120000 1408 1077 1331 7863 9545;9546 9545 1397;1398 2 ALYPSSVGQPFQGAYLEINKNPK Unmodified 2520.3013 0.30127398 245 O43795;O43795-2 MYO1B Unconventional myosin-Ib yes no 0 0 0 1 By MS/MS By MS/MS 3 0 4 3 1 48.266 48.082 4 9.5303E-29 24834 20211116_3441_TMUAki_TMT10x_S_F3 178.77 163.52 13253000 23376000 229690 21043000 17159000 19530000 16810000 16363000 16201000 16734000 17478000 12342000 21803000 1358500 21609000 16458000 19918000 17050000 16808000 16554000 16328000 16821000 7 7 5 7 7 7 7 7 7 7 7 4988500 8015800 20021 7541800 5767500 9881100 6868200 5837300 5573300 5964100 6095800 4645000 7477900 442480 7762300 5559000 9831000 6869100 6142800 5745100 5819600 5864200 4 4 3 4 4 4 4 4 4 4 4 8264700 15360000 209670 13501000 11392000 9648700 9941400 10526000 10628000 10770000 11382000 7696700 14325000 916000 13847000 10899000 10087000 10181000 10665000 10809000 10508000 10957000 3 3 2 3 3 3 3 3 3 3 3 1984100000 823230000 1160900000 1409 245 1332 7864;7865;7866;7867 9547;9548;9549;9550;9551;9552;9553 9551 7 ALYPVIPR Unmodified 927.55419 0.55418762 2272 Q8TCS8 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3.25 2.77 1 2 1 1 3 52.217 52.088 2 0.0017711 16466 20211116_3429_TMUAki_TMT10x_P_F2 106.76 81.762 8957000 15321000 63365 14856000 9248900 8868000 8770100 13444000 12898000 10935000 12988000 8340200 14295000 785950 15099000 8858800 9506300 9048700 13363000 12944000 10783000 12526000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8957000 15321000 63365 14856000 9248900 8868000 8770100 13444000 12898000 10935000 12988000 8340200 14295000 785950 15099000 8858800 9506300 9048700 13363000 12944000 10783000 12526000 3 3 2 3 3 3 3 3 3 3 3 240820000 0 240820000 1410 2272 1333 7868;7869;7870;7871 9554;9555;9556;9557;9558 9554 5 ALYYLQIHPQELR Unmodified 1642.8831 0.88312633 1847 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 59.329 59.297 3 1.9917E-09 17777 20211116_3428_TMUAki_TMT10x_P_F1 131.32 107.47 40585000 67794000 570950 72621000 56889000 70380000 44449000 46184000 50233000 47147000 53263000 37791000 63277000 3856500 73711000 54252000 71293000 45916000 48207000 50958000 46007000 51287000 4 4 3 4 4 4 4 4 4 4 4 24045000 41366000 527100 44044000 43503000 55353000 29756000 27322000 31283000 29177000 32321000 22392000 38609000 2757300 44912000 41399000 55063000 30949000 29249000 31795000 28419000 31147000 2 2 2 2 2 2 2 2 2 2 2 16540000 26427000 43843 28577000 13386000 15027000 14693000 18862000 18950000 17971000 20942000 15398000 24668000 1099200 28799000 12853000 16231000 14967000 18958000 19163000 17588000 20141000 2 2 1 2 2 2 2 2 2 2 2 3678900000 2478400000 1200500000 1411 1847 1334 7872;7873;7874;7875 9559;9560;9561;9562 9559 4 AMADALLER Oxidation (M) 1004.4961 0.4960804 915 P34897;P34897-3;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 2.71 0.7 3 3 1 2 5 39.404 39.341 2 0.0047912 12857 20211116_3441_TMUAki_TMT10x_S_F3 81.547 50.811 3715800 5726300 0 6591900 6518800 5624000 4200400 4670700 4801900 3901300 5503200 3459400 5346500 304760 6649200 6189500 5767600 4400500 4773900 4883700 3841900 5287000 5 5 0 5 5 5 5 5 5 5 5 1617100 2518200 0 2912100 4187400 3713800 2141200 1926800 1947000 1620700 2398200 1505500 2351200 145290 2955000 3962000 3693800 2272900 2040100 2005300 1595400 2299500 2 2 0 2 2 2 2 2 2 2 2 2098700 3208100 0 3679700 2331400 1910200 2059100 2743900 2854900 2280600 3105000 1953900 2995200 159470 3694200 2227500 2073800 2127500 2733900 2878400 2246400 2987500 3 3 0 3 3 3 3 3 3 3 3 361640000 130210000 231430000 1412 915 1335 7876;7877;7878;7879;7880;7881;7882 9563;9564;9565;9566 9566 1145 4 AMADALLER Unmodified 988.50117 0.50116577 915 P34897;P34897-3;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 52.232 51.985 2 0.0017865 17970 20211116_3441_TMUAki_TMT10x_S_F3 93.598 63.522 7002500 10217000 0 12734000 10833000 8476700 7245500 6749200 6173800 5881400 8952000 6519800 9543300 615140 12749000 10296000 8859300 7503800 6923300 6426300 5779800 8549600 2 2 0 2 2 2 2 2 2 2 2 3232100 4479300 0 5570800 6686000 5869400 3964900 3060500 2811300 2796900 4255500 3009300 4183800 304160 5610500 6341700 5897800 4128300 3245600 2961800 2742500 4060400 1 1 0 1 1 1 1 1 1 1 1 3770400 5738000 0 7163200 4146800 2607300 3280700 3688600 3362500 3084500 4696500 3510600 5359500 310980 7138800 3953900 2961500 3375500 3677700 3464500 3037300 4489200 1 1 0 1 1 1 1 1 1 1 1 242030000 140780000 101250000 1413 915 1335 7883;7884 9567;9568 9568 2 AMADPEVQQIMSDPAMR 3 Oxidation (M) 1936.8329 0.83288296 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 3 0 By MS/MS By MS/MS 1.86 0.833 3 2 2 3 4 38.298 38.246 3 0.00081044 9310 20211116_3440_TMUAki_TMT10x_S_F2 62.709 59.868 1194000 1858600 5587.7 2214400 2242500 2038600 1411400 2014200 2325800 1465600 2050100 1111500 1735600 86655 2231300 2128200 2087100 1503400 2032700 2316300 1454000 1986100 7 7 2 7 7 7 7 7 7 7 7 604520 899170 1238.7 1039800 1752200 1612300 925170 945000 1159800 715360 1012500 562750 839550 52067 1059400 1658400 1592200 988950 987620 1164400 708120 981250 3 3 1 3 3 3 3 3 3 3 3 589440 959380 4349 1174600 490240 426250 486230 1069200 1165900 750270 1037600 548800 896010 34589 1171900 469760 494840 514450 1045100 1151800 745890 1004900 4 4 1 4 4 4 4 4 4 4 4 646610000 359220000 287390000 1414 897 1336 7885;7886;7887;7888;7889;7890;7891 9569;9570;9571;9572;9573;9574;9575;9576 9575 1101;1102;1103 8 AMADPEVQQIMSDPAMR 2 Oxidation (M) 1920.838 0.83796833 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 2 0 By MS/MS By MS/MS 2.29 0.7 1 3 3 4 3 47.696 47.585 3 0.0029649 16289 20211116_3430_TMUAki_TMT10x_P_F3 60.158 50.994 6460800 11064000 48350 11783000 9769700 11552000 7712600 8702000 8585700 7595500 9201500 6015800 10326000 600410 11967000 9317100 11719000 7957800 8958300 8718100 7463800 8857300 6 6 4 6 6 6 6 6 6 6 6 3714600 6189800 31046 6794300 6987100 9121600 5239000 5010300 4811500 4069800 5117400 3458900 5778000 374460 6923400 6657000 9056500 5392300 5273500 4924500 4013500 4927100 3 3 2 3 3 3 3 3 3 3 3 2746100 4874100 17305 4989000 2782600 2430300 2473600 3691700 3774200 3525700 4084100 2556900 4548500 225950 5043200 2660200 2662000 2565500 3684900 3793700 3450200 3930200 3 3 2 3 3 3 3 3 3 3 3 951750000 746800000 204950000 1415 897 1336 7892;7893;7894;7895;7896;7897;7898 9577;9578;9579;9580;9581;9582 9578 1101;1102;1103 6 AMDLVQEEFLQR Unmodified 1477.7235 0.72351415 2854 Q9HB07 C12orf10 UPF0160 protein MYG1, mitochondrial yes yes 0 0 0 0 By MS/MS 2 0 1 1 70.892 70.608 2 4.1738E-08 24004 20211116_3429_TMUAki_TMT10x_P_F2 122.51 97.719 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1416 2854 1337 7899 9583 9583 1 AMDQVNALCEQLVK Acetyl (Protein N-term);Oxidation (M) 1675.7909 0.79094179 2852 Q9HAV4 XPO5 Exportin-5 yes yes 1 0 1 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 71.046 70.769 2 9.8961E-10 24494 20211116_3430_TMUAki_TMT10x_P_F3 74.841 68.308 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1417 2852 1338 7900;7901;7902 9584;9585;9586 9584 2977 3 AMEAVAAQGK Unmodified 974.48552 0.48551571 722 P18669;P15259 PGAM1;PGAM2 Phosphoglycerate mutase 1;Phosphoglycerate mutase 2 yes no 0 0 0 0 By MS/MS 5 0 1 1 37.706 37.695 3 0.073985 9779 20211116_3433_TMUAki_TMT10x_P_F5 43.492 29.49 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1418 722 1339 7903 9587 9587 1 AMEAVAAQGK Oxidation (M) 990.48043 0.48043033 722 P18669;P15259 PGAM1;PGAM2 Phosphoglycerate mutase 1;Phosphoglycerate mutase 2 yes no 0 0 1 0 By matching By MS/MS 4.5 0.5 2 2 2 2 31.166 31.254 2;3 0.00097028 6031 20211116_3444_TMUAki_TMT10x_S_F5 81.338 59.874 144450 275960 1596.1 257090 147700 90080 176770 67459 84501 85163 154360 134510 257430 9428.2 261110 142450 101560 174920 70259 92481 82446 146740 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 144450 275960 1596.1 257090 147700 90080 176770 67459 84501 85163 154360 134510 257430 9428.2 261110 142450 101560 174920 70259 92481 82446 146740 2 2 1 2 2 2 2 2 2 2 2 37498000 29525000 7973200 1419 722 1339 7904;7905;7906;7907 9588;9589 9588 828 2 AMEAVLTGLVEAALGPEVLSR Oxidation (M) 2141.1402 0.14020524 3303 Q9Y4R8 TELO2 Telomere length regulation protein TEL2 homolog yes yes 0 0 1 0 By matching By MS/MS 6 0 2 1 1 81.9 81.899 3 5.1E-05 26902 20211116_3445_TMUAki_TMT10x_S_F6 70.897 51.605 643650 1206400 5960.4 1139800 1000300 818150 908480 679740 591280 695870 941980 599340 1125400 63913 1162700 957180 850210 916490 698590 627850 678950 897840 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 643650 1206400 5960.4 1139800 1000300 818150 908480 679740 591280 695870 941980 599340 1125400 63913 1162700 957180 850210 916490 698590 627850 678950 897840 1 1 1 1 1 1 1 1 1 1 1 122770000 39144000 83623000 1420 3303 1340 7908;7909 9590 9590 3268 1 AMEGEVNVCYK Oxidation (M) 1314.5584 0.55842266 1661 Q13769 THOC5 THO complex subunit 5 homolog yes yes 0 0 1 0 By MS/MS 4 0 1 1 38.434 38.615 3 0.0016127 10223 20211116_3442_TMUAki_TMT10x_S_F4 70.942 46.955 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1421 1661 1341 7910 9591 9591 2223 1 AMEVDERPTEQYSDIGGLDK Oxidation (M) 2268.0216 0.021606243 711 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 1 1 By MS/MS By MS/MS 2.86 0.639 2 4 1 5 2 47.781 47.613 3;4 6.2752E-13 16112 20211116_3441_TMUAki_TMT10x_S_F3 132.83 119.6 17310000 29808000 150450 38750000 39238000 48001000 25095000 33918000 42463000 28817000 30155000 16118000 27848000 1806400 39038000 37272000 48013000 26732000 35043000 42002000 28354000 29470000 9 9 6 9 9 9 9 9 9 9 9 12624000 21280000 69959 27460000 36286000 44585000 22729000 24492000 30621000 20520000 21376000 11754000 19879000 1367200 27834000 34451000 43913000 24008000 25797000 30478000 20205000 20907000 6 6 3 6 6 6 6 6 6 6 6 4686100 8528600 80494 11289000 2951900 3415900 2366000 9426000 11843000 8296800 8778800 4363800 7968400 439240 11204000 2820600 4100600 2724000 9246600 11525000 8149600 8563500 3 3 3 3 3 3 3 3 3 3 3 2188200000 1790900000 397310000 1422 711 1342 7911;7912;7913;7914;7915;7916;7917 9592;9593;9594;9595;9596;9597;9598;9599;9600 9598 795 9 AMEVDERPTEQYSDIGGLDK Unmodified 2252.0267 0.026691621 711 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 53.364 53.113 3 9.9852E-07 16948 20211116_3429_TMUAki_TMT10x_P_F2 92.563 77.408 1326300 2179300 0 2814000 2434100 2650000 1981200 962980 787190 980130 1654700 1234800 2035900 110920 2823500 2321600 2671900 1996300 1064700 883860 956540 1569300 1 1 0 1 1 1 1 1 1 1 1 1326300 2179300 0 2814000 2434100 2650000 1981200 962980 787190 980130 1654700 1234800 2035900 110920 2823500 2321600 2671900 1996300 1064700 883860 956540 1569300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 143230000 143230000 0 1423 711 1342 7918;7919 9601;9602 9601 2 AMEVDIEERPK Oxidation (M) 1331.6391 0.63911582 3271 Q9Y3C1;Q9Y3C1-3;Q9Y3C1-2 NOP16 Nucleolar protein 16 yes no 0 0 1 1 By MS/MS By MS/MS 3 0.816 1 1 1 1 2 34.163 34.033 3 1.3566E-05 10656 20211116_3441_TMUAki_TMT10x_S_F3 109.16 89.946 1489800 2241900 28398 2417000 2138100 2025700 1639600 1349200 1458300 1285200 1807900 1387400 2092500 159060 2447500 2039300 2072600 1683600 1404000 1504000 1257800 1733200 3 3 3 3 3 3 3 3 3 3 3 775710 1129300 14794 1229000 1418600 1388100 915370 724750 747390 633700 901790 722370 1054100 87103 1249200 1348500 1389400 949610 767630 773170 622660 865140 1 1 1 1 1 1 1 1 1 1 1 714120 1112600 13604 1187900 719520 637570 724260 624470 710960 651470 906070 665020 1038500 71960 1198300 690850 683160 733980 636380 730780 635140 868010 2 2 2 2 2 2 2 2 2 2 2 95088000 57859000 37228000 1424 3271 1343 7920;7921;7922 9603;9604;9605 9604 3244 3 AMEVDIEERPK Unmodified 1315.6442 0.6442012 3271 Q9Y3C1;Q9Y3C1-3;Q9Y3C1-2 NOP16 Nucleolar protein 16 yes no 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 40.868 40.753 3 9.4672E-07 13383 20211116_3441_TMUAki_TMT10x_S_F3 131.17 108.94 1620100 2399400 51019 2615800 1521200 1167400 1505600 1188900 1100700 1124900 1741700 1508800 2239700 180480 2631600 1461300 1279100 1515400 1205800 1160200 1101200 1660300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1620100 2399400 51019 2615800 1521200 1167400 1505600 1188900 1100700 1124900 1741700 1508800 2239700 180480 2631600 1461300 1279100 1515400 1205800 1160200 1101200 1660300 1 1 1 1 1 1 1 1 1 1 1 78087000 0 78087000 1425 3271 1343 7923;7924 9606 9606 1 AMGAAQVVVTDLSATR Oxidation (M) 1604.8192 0.81920545 1473 Q00796 SORD Sorbitol dehydrogenase yes yes 0 0 1 0 By MS/MS 5 0 1 1 55.488 55.686 2 1.5055E-39 16951 20211116_3433_TMUAki_TMT10x_P_F5 202 186.04 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1426 1473 1344 7925 9607 9607 1988 1 AMGAAQVVVTDLSATR Unmodified 1588.8243 0.82429083 1473 Q00796 SORD Sorbitol dehydrogenase yes yes 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 65.327 65.647 2 1.1361E-29 21638 20211116_3435_TMUAki_TMT10x_P_F7 170.66 144.06 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1427 1473 1344 7926;7927;7928 9608;9609;9610 9608 3 AMGDAEIKDGERLPLAVK Oxidation (M) 1928.0037 0.0037117545 936 P35606;P35606-2 COPB2 Coatomer subunit beta' yes no 0 0 1 2 By MS/MS 6 0 1 1 47.428 47.589 4 0.03676 12825 20211116_3445_TMUAki_TMT10x_S_F6 40.349 27.119 2197500 3943400 70673 4041800 2329500 2255800 1977500 6048600 6144500 4811300 4652900 2046600 3680000 249900 4089700 2229100 2493400 2153200 5921300 6015700 4749900 4534600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2197500 3943400 70673 4041800 2329500 2255800 1977500 6048600 6144500 4811300 4652900 2046600 3680000 249900 4089700 2229100 2493400 2153200 5921300 6015700 4749900 4534600 1 1 1 1 1 1 1 1 1 1 1 128570000 0 128570000 1428 936 1345 7929 9611 9611 1195 1 AMGIMNSFVNDIFER 2 Oxidation (M) 1774.8018 0.80184082 290;528;2613;2191 Q93079;Q99877;P62807;P58876;O60814;Q5QNW6;Q99879;Q5QNW6-2;P57053;P33778;Q16778;P23527;P06899;Q8N257;Q99880 HIST1H2BH;HIST1H2BN;HIST1H2BC;HIST1H2BD;HIST1H2BK;HIST2H2BF;HIST1H2BM;H2BFS;HIST1H2BB;HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST1H2BL Histone H2B type 1-H;Histone H2B type 1-N;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type 2-F;Histone H2B type 1-M;Histone H2B type F-S;Histone H2B type 1-B;Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Histone H2B type 1-L no no 0 0 2 0 By MS/MS By MS/MS 5.94 1.55 4 10 19 28 58 66 148 30 203 160 50.543 50.595 2;3 2.0112E-14 27233 20211116_3444_TMUAki_TMT10x_S_F5 129.77 111.63 672390000 1172000000 5335700 907350000 856330000 1590200000 855750000 1563700000 1643100000 1540400000 1127600000 626050000 1092600000 39358000 954550000 820980000 1576800000 891760000 1585100000 1618700000 1505400000 1103700000 349 350 116 350 350 350 351 347 349 352 347 374040000 630230000 3175300 504750000 388820000 1024600000 431790000 779930000 843000000 802960000 596590000 348270000 587610000 20689000 531560000 373920000 1006200000 448460000 801680000 830780000 783270000 583140000 216 217 74 216 217 218 219 215 216 218 217 298350000 541810000 2160300 402600000 467510000 565670000 423960000 783780000 800060000 737450000 531040000 277780000 505040000 18670000 422990000 447070000 570580000 443300000 783410000 787920000 722140000 520600000 133 133 42 134 133 132 132 132 133 134 130 599200000000 306310000000 292890000000 1429 290;528;2191;2613 1346 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9902 224;225 400 AMGIMNSFVNDIFER Oxidation (M) 1758.8069 0.8069262 290;528;2613;2191 Q93079;Q99877;P62807;P58876;O60814;Q5QNW6;Q99879;Q5QNW6-2;P57053;P33778;Q16778;P23527;P06899;Q8N257;Q99880 HIST1H2BH;HIST1H2BN;HIST1H2BC;HIST1H2BD;HIST1H2BK;HIST2H2BF;HIST1H2BM;H2BFS;HIST1H2BB;HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST1H2BL Histone H2B type 1-H;Histone H2B type 1-N;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type 2-F;Histone H2B type 1-M;Histone H2B type F-S;Histone H2B type 1-B;Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Histone H2B type 1-L no no 0 0 1 0 By MS/MS By MS/MS 5.84 1.99 17 26 18 15 50 43 146 59 210 164 57.313 57.334 2;3 2.4118E-38 25761 20211116_3445_TMUAki_TMT10x_S_F6 256.43 231.04 1489100000 2319800000 3108900 2133900000 1846000000 2087500000 1913600000 923100000 699530000 1120300000 1721900000 1386300000 2163900000 94813000 2189400000 1770600000 2103300000 1899900000 1003200000 801050000 1086100000 1629400000 327 331 130 329 327 330 330 328 328 328 327 747240000 1147300000 1944800 1083600000 741890000 1290100000 874060000 477390000 373400000 568520000 877980000 695720000 1070300000 40480000 1113100000 714390000 1283300000 864190000 529120000 419680000 551490000 831340000 192 194 73 193 191 193 193 192 192 192 191 741840000 1172500000 1164100 1050300000 1104100000 797410000 1039500000 445710000 326130000 551820000 843890000 690630000 1093600000 54333000 1076300000 1056200000 820040000 1035700000 474090000 381370000 534570000 798040000 135 137 57 136 136 137 137 136 136 136 136 812850000000 397980000000 414860000000 1430 290;528;2191;2613 1346 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10012;10013;10014;10015;10016;10017;10018;10019;10020;10021;10022;10023;10024;10025;10026;10027;10028;10029;10030;10031;10032;10033;10034;10035;10036;10037;10038;10039;10040;10041;10042;10043;10044;10045;10046;10047;10048;10049;10050;10051;10052;10053;10054;10055;10056;10057;10058;10059;10060;10061;10062;10063;10064;10065;10066;10067;10068;10069;10070;10071;10072;10073;10074;10075;10076;10077;10078;10079;10080;10081;10082;10083;10084;10085;10086;10087;10088;10089;10090;10091;10092;10093;10094;10095;10096;10097;10098;10099;10100;10101;10102;10103;10104;10105;10106;10107;10108;10109;10110;10111;10112;10113;10114;10115;10116;10117;10118;10119;10120;10121;10122;10123;10124;10125;10126;10127;10128;10129;10130;10131;10132;10133;10134;10135;10136;10137;10138;10139;10140;10141;10142;10143;10144;10145;10146;10147;10148;10149;10150;10151;10152;10153;10154;10155;10156;10157;10158;10159;10160;10161;10162;10163;10164;10165;10166;10167;10168;10169;10170;10171;10172;10173;10174;10175;10176;10177;10178;10179;10180;10181;10182;10183;10184;10185;10186;10187;10188;10189;10190;10191;10192;10193;10194;10195;10196;10197;10198;10199;10200;10201;10202;10203;10204;10205;10206;10207;10208;10209;10210;10211;10212;10213;10214;10215;10216;10217;10218;10219;10220;10221;10222;10223;10224;10225;10226;10227;10228;10229;10230;10231;10232;10233;10234;10235;10236;10237;10238;10239;10240;10241;10242;10243;10244;10245;10246;10247;10248;10249;10250;10251;10252;10253;10254;10255;10256;10257;10258;10259;10260;10261;10262;10263;10264;10265;10266;10267;10268;10269;10270;10271;10272;10273;10274;10275;10276;10277;10278;10279;10280;10281;10282;10283;10284;10285;10286;10287;10288;10289;10290;10291;10292;10293;10294;10295;10296;10297;10298;10299;10300;10301;10302;10303;10304;10305;10306;10307;10308;10309;10310;10311;10312;10313;10314;10315;10316;10317;10318;10319;10320;10321;10322;10323;10324;10325;10326;10327;10328;10329;10330;10331;10332;10333;10334;10335;10336;10337;10338;10339;10340;10341;10342;10343;10344;10345;10346;10347;10348;10349;10350;10351;10352;10353;10354;10355;10356;10357;10358;10359;10360;10361;10362;10363;10364;10365;10366;10367;10368;10369;10370;10371;10372;10373;10374;10375;10376;10377;10378;10379;10380;10381;10382;10383;10384;10385;10386;10387;10388;10389;10390;10391;10392;10393;10394;10395;10396;10397;10398;10399;10400 10320 224;225 389 AMGIMNSFVNDIFER Unmodified 1742.812 0.81201158 290;528;2613;2191 Q93079;Q99877;P62807;P58876;O60814;Q5QNW6;Q99879;Q5QNW6-2;P57053;P33778;Q16778;P23527;P06899;Q8N257;Q99880 HIST1H2BH;HIST1H2BN;HIST1H2BC;HIST1H2BD;HIST1H2BK;HIST2H2BF;HIST1H2BM;H2BFS;HIST1H2BB;HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST1H2BL Histone H2B type 1-H;Histone H2B type 1-N;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type 2-F;Histone H2B type 1-M;Histone H2B type F-S;Histone H2B type 1-B;Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Histone H2B type 1-L no no 0 0 0 0 By MS/MS By MS/MS 4.16 2.66 13 14 3 4 5 5 7 11 21 41 75.113 75.104 2;3 1.2473E-154 26394 20211116_3445_TMUAki_TMT10x_S_F6 420.68 369.41 558890000 786270000 1124800 1044800000 473050000 291070000 624350000 87788000 42395000 128890000 479910000 520320000 734640000 34039000 1036200000 455190000 324950000 607380000 100390000 84063000 124190000 449410000 60 60 25 60 58 58 60 59 59 61 60 231490000 314050000 687710 423540000 169320000 143960000 221750000 33966000 18430000 50857000 189750000 215520000 293450000 13711000 420060000 163480000 154900000 215900000 40239000 33725000 48974000 177740000 16 16 8 16 14 14 16 16 16 16 16 327400000 472220000 437120 621230000 303730000 147120000 402600000 53822000 23965000 78035000 290160000 304800000 441190000 20328000 616150000 291710000 170050000 391480000 60156000 50337000 75216000 271670000 44 44 17 44 44 44 44 43 43 45 44 199820000000 101690000000 98131000000 1431 290;528;2191;2613 1346 8667;8668;8669;8670;8671;8672;8673;8674;8675;8676;8677;8678;8679;8680;8681;8682;8683;8684;8685;8686;8687;8688;8689;8690;8691;8692;8693;8694;8695;8696;8697;8698;8699;8700;8701;8702;8703;8704;8705;8706;8707;8708;8709;8710;8711;8712;8713;8714;8715;8716;8717;8718;8719;8720;8721;8722;8723;8724;8725;8726;8727;8728 10401;10402;10403;10404;10405;10406;10407;10408;10409;10410;10411;10412;10413;10414;10415;10416;10417;10418;10419;10420;10421;10422;10423;10424;10425;10426;10427;10428;10429;10430;10431;10432;10433;10434;10435;10436;10437;10438;10439;10440;10441;10442;10443;10444;10445;10446;10447;10448;10449;10450;10451;10452;10453;10454;10455;10456;10457;10458;10459;10460;10461;10462;10463;10464;10465;10466;10467;10468;10469;10470;10471;10472;10473;10474;10475;10476;10477;10478;10479 10464 79 AMGPLVLTEVLFNEK Unmodified 1659.8906 0.89057948 1231 P55010 EIF5 Eukaryotic translation initiation factor 5 yes yes 0 0 0 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 1 3 81.422 81.433 3 2.6679E-10 27001 20211116_3436_TMUAki_TMT10x_P_F8 137.62 123.6 6204500 9869400 179290 10918000 6134800 7231300 8580500 4608000 4105600 5154700 7171600 5778300 9213100 667060 11009000 5953800 7535200 8437100 4833900 4481400 5011800 6823300 4 4 3 4 4 4 4 4 4 4 4 2069800 3168100 473.13 3265600 2113900 3087100 2545200 1319300 1118000 1524400 2281700 1927100 2956500 159200 3321900 2036900 3116200 2514900 1436700 1241100 1480400 2165000 2 2 1 2 2 2 2 2 2 2 2 4134800 6701300 178820 7652500 4020900 4144100 6035300 3288700 2987600 3630300 4890000 3851200 6256600 507860 7687200 3916900 4419000 5922200 3397200 3240300 3531500 4658300 2 2 2 2 2 2 2 2 2 2 2 597040000 245920000 351120000 1432 1231 1347 8729;8730;8731;8732 10480;10481;10482;10483 10480 4 AMGPLVLTEVLFNEK Oxidation (M) 1675.8855 0.8854941 1231 P55010 EIF5 Eukaryotic translation initiation factor 5 yes yes 0 0 1 0 By MS/MS 7 0.816 1 1 1 3 79.83 79.836 3 6.5215E-07 28187 20211116_3446_TMUAki_TMT10x_S_F7 113.35 94.514 7090500 11453000 119560 10792000 7851100 8843700 10442000 7417100 7235500 8368800 9265600 6602800 10685000 707190 11027000 7600200 9097500 10357000 7641700 7573300 8134200 8875400 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7090500 11453000 119560 10792000 7851100 8843700 10442000 7417100 7235500 8368800 9265600 6602800 10685000 707190 11027000 7600200 9097500 10357000 7641700 7573300 8134200 8875400 3 3 2 3 3 3 3 3 3 3 3 1200900000 0 1200900000 1433 1231 1347 8733;8734;8735 10484;10485;10486 10486 1654 3 AMGVVVATGVNTEIGK Oxidation (M) 1560.8181 0.81814282 697 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 1 0 By MS/MS By MS/MS 6 0 2 1 1 51.972 52.089 3 2.3902E-08 14289 20211116_3434_TMUAki_TMT10x_P_F6 119.77 89.715 9854400 15657000 121740 16594000 14757000 21345000 12237000 15882000 14531000 14340000 14530000 9176000 14613000 960760 16933000 14092000 21329000 12615000 16377000 14683000 14069000 14017000 3 3 2 3 3 3 3 3 3 3 3 7329200 11428000 11426 12127000 12047000 18637000 9666200 11430000 10676000 10534000 10487000 6824000 10666000 646000 12420000 11490000 18423000 9960600 11958000 10810000 10325000 10122000 2 2 1 2 2 2 2 2 2 2 2 2525200 4229200 110310 4466400 2710500 2708300 2570500 4452000 3855700 3806400 4043200 2352000 3947100 314750 4513400 2602100 2906600 2654400 4419100 3873000 3744100 3894500 1 1 1 1 1 1 1 1 1 1 1 706980000 426870000 280110000 1434 697 1348 8736;8737 10487;10488;10489 10488 779 3 AMIEVINHK Oxidation (M) 1069.559 0.559015 848 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 1 0 By MS/MS By MS/MS 5 0.816 1 1 1 2 1 35.435 35.486 3 0.0044687 8004 20211116_3445_TMUAki_TMT10x_S_F6 66.299 46.984 1485200 2206500 14441 2173900 2780000 3442300 1972700 2316200 2125600 2144400 2196500 1383000 2058700 151590 2239000 2645900 3403200 2047900 2406600 2158300 2101400 2116700 3 3 2 3 3 3 3 3 3 3 3 1382300 2037500 14354 1976100 2673400 3345800 1860200 2239400 2034300 2069200 2050400 1287100 1901000 142930 2040700 2543600 3299100 1934800 2327600 2062500 2027900 1977400 2 2 1 2 2 2 2 2 2 2 2 102940 168950 87.071 197860 106510 96433 112480 76826 91263 75214 146130 95846 157760 8665.5 198290 102290 104050 113130 79053 95720 73525 139270 1 1 1 1 1 1 1 1 1 1 1 193420000 190980000 2434800 1435 848 1349 8738;8739;8740 10490;10491;10492 10492 1017 3 AMIEVINHK Unmodified 1053.5641 0.56410038 848 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 By MS/MS 7 0 1 1 43.207 43.756 3 0.00047435 13278 20211116_3446_TMUAki_TMT10x_S_F7 84.615 54.948 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1436 848 1349 8741 10493 10493 1 AMKPPGGESSNLFGSPEEATPSSRPNR Oxidation (M) 2815.3195 0.3195196 2834 Q9H910;Q9H910-3 HN1L Hematological and neurological expressed 1-like protein yes no 0 0 1 2 By MS/MS By MS/MS 5.8 0.748 2 2 1 3 2 34.792 34.949 4 2.8231E-52 10455 20211116_3435_TMUAki_TMT10x_P_F7 212.32 200.8 3314100 5633600 9351.4 7554500 6221700 7640400 4113200 6292700 6738700 4702900 5320800 3085800 5263900 125470 7572400 5913200 7747900 4363700 6418400 6690200 4658600 5176700 8 8 6 8 8 8 8 8 8 8 8 2273500 3918300 6347.5 5084100 5677000 6847000 3766200 3843500 3840600 2707200 3430700 2116900 3660500 88906 5130600 5395700 6799000 3922500 4025400 3889400 2690800 3322100 5 5 4 5 5 5 5 5 5 5 5 1040500 1715300 3004 2470400 544710 793400 346990 2449200 2898100 1995700 1890100 968860 1603400 36563 2441800 517500 948910 441270 2393000 2800900 1967800 1854500 3 3 2 3 3 3 3 3 3 3 3 999000000 687770000 311230000 1437 2834 1350 8742;8743;8744;8745;8746 10494;10495;10496;10497;10498;10499;10500;10501 10497 2968 8 AMKPPGGESSNLFGSPEEATPSSRPNR Unmodified 2799.3246 0.32460498 2834 Q9H910;Q9H910-3 HN1L Hematological and neurological expressed 1-like protein yes no 0 0 0 2 By MS/MS By MS/MS 6.75 0.829 2 1 1 3 1 42.124 42.339 4 2.2194E-77 10359 20211116_3434_TMUAki_TMT10x_P_F6 249.19 235.09 8362400 13788000 93861 18802000 17674000 13302000 12420000 4202400 3680100 4471500 9156500 7786900 12884000 908540 18745000 16820000 13686000 12603000 4740000 4320600 4356000 8663400 6 6 5 6 6 6 6 6 6 6 6 7549900 12345000 69954 16741000 17107000 12914000 11980000 3775800 3332800 3951300 8139200 7030200 11535000 822340 16711000 16278000 13187000 12152000 4305400 3939500 3851800 7702800 5 5 4 5 5 5 5 5 5 5 5 812460 1442700 23908 2061500 567120 387290 440570 426600 347230 520250 1017300 756660 1348600 86203 2034300 542050 498690 450620 434560 381110 504250 960620 1 1 1 1 1 1 1 1 1 1 1 942810000 850900000 91910000 1438 2834 1350 8747;8748;8749;8750 10502;10503;10504;10505;10506;10507 10502 6 AMLSGPGQFAENETNEVNFR Oxidation (M) 2226.0011 0.0011455721 1793 Q15369;Q15369-2 TCEB1 Transcription elongation factor B polypeptide 1 yes no 0 0 1 0 By MS/MS By MS/MS 3.55 0.988 2 3 4 2 5 6 57.605 57.51 2;3 1.6878E-80 20191 20211116_3441_TMUAki_TMT10x_S_F3 311.99 289.76 22883000 40305000 146180 38568000 28317000 37127000 25898000 29051000 27726000 26747000 31493000 21307000 37602000 1868900 39447000 27092000 37730000 26452000 29876000 28260000 26217000 30264000 18 18 5 18 18 18 18 18 18 18 18 11319000 18726000 90967 18270000 14990000 24138000 13722000 13733000 13597000 12767000 14669000 10539000 17472000 1031000 18758000 14344000 23995000 13981000 14459000 13876000 12509000 14117000 8 8 3 8 8 8 8 8 8 8 8 11564000 21578000 55214 20298000 13327000 12989000 12176000 15318000 14129000 13980000 16824000 10768000 20130000 837890 20688000 12749000 13735000 12471000 15417000 14384000 13708000 16146000 10 10 2 10 10 10 10 10 10 10 10 12011000000 6551100000 5459600000 1439 1793 1351 8751;8752;8753;8754;8755;8756;8757;8758;8759;8760;8761 10508;10509;10510;10511;10512;10513;10514;10515;10516;10517;10518;10519;10520;10521;10522;10523;10524;10525 10521 2415 18 AMLSGPGQFAENETNEVNFR Unmodified 2210.0062 0.00623095 1793 Q15369;Q15369-2 TCEB1 Transcription elongation factor B polypeptide 1 yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 63.715 63.692 3 1.3229E-41 20427 20211116_3442_TMUAki_TMT10x_S_F4 205.88 192.94 6926500 12771000 32113 10164000 9410100 12136000 9423100 12797000 10755000 10750000 10505000 6449300 11907000 620740 10582000 9023900 12257000 9598800 12917000 10874000 10583000 10141000 4 4 2 4 4 4 4 4 4 4 4 2089600 3664700 13238 2589500 2948000 6605500 3846400 5103400 4088900 4277700 3478800 1945700 3415500 197600 2777700 2850100 6447800 3862100 5239900 4127500 4211800 3374800 1 1 1 1 1 1 1 1 1 1 1 4836900 9106100 18875 7574200 6462100 5530800 5576700 7693900 6666100 6472100 7025900 4503600 8491200 423130 7804600 6173800 5809100 5736700 7676900 6746700 6371300 6766500 3 3 1 3 3 3 3 3 3 3 3 1687600000 979860000 707780000 1440 1793 1351 8762;8763 10526;10527;10528;10529 10527 4 AMPLPEEVTQILEENSDLIR Oxidation (M) 2312.157 0.15697751 2073 Q7Z2Z2;Q7Z2Z2-2 EFTUD1 Elongation factor Tu GTP-binding domain-containing protein 1 yes no 0 0 1 0 By MS/MS 1 0 1 1 80.456 80.423 3 3.6122E-05 28386 20211116_3439_TMUAki_TMT10x_S_F1 77.554 65.194 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1441 2073 1352 8764 10530 10530 2576 1 AMQADISQAAQILSSDPSR Oxidation (M) 2003.9582 0.95821812 1006 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 1 0 By MS/MS By MS/MS 5.17 0.687 1 3 2 4 2 59.838 59.933 2;3 3.2598E-17 18713 20211116_3433_TMUAki_TMT10x_P_F5 145.39 130 38060000 61387000 1320500 68853000 49061000 65468000 42117000 40423000 40436000 40444000 44972000 35448000 57308000 4540200 69663000 46947000 66341000 43033000 42364000 41371000 39499000 43242000 8 8 8 8 8 8 8 8 8 8 8 26841000 42333000 546680 47490000 37867000 55957000 32364000 28132000 28456000 28089000 30749000 24996000 39520000 2889200 48210000 36203000 55858000 32995000 30006000 29201000 27435000 29591000 5 5 5 5 5 5 5 5 5 5 5 11219000 19054000 773850 21363000 11194000 9510700 9753200 12291000 11980000 12355000 14224000 10452000 17788000 1651000 21453000 10744000 10482000 10037000 12358000 12170000 12064000 13651000 3 3 3 3 3 3 3 3 3 3 3 4828600000 2936400000 1892200000 1442 1006 1353 8765;8766;8767;8768;8769;8770 10531;10532;10533;10534;10535;10536;10537;10538;10539 10534 1300 9 AMQADISQAAQILSSDPSR Unmodified 1987.9633 0.9633035 1006 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 0 0 By MS/MS By MS/MS 5.43 0.904 1 3 2 1 4 3 71.926 71.956 2;3 1.8248E-30 23702 20211116_3433_TMUAki_TMT10x_P_F5 172.82 141.59 14553000 25294000 250630 22525000 17665000 21476000 17036000 21985000 17316000 18186000 19993000 13552000 23592000 1483700 23159000 16938000 21954000 17322000 22213000 17699000 17917000 19204000 6 6 6 6 6 6 6 6 6 6 6 4636200 7216600 94424 6618900 4539100 10185000 4963400 7363800 5164200 5414200 5962600 4317500 6731600 471010 6847900 4368700 10092000 5018600 7571100 5273200 5368100 5727200 2 2 2 2 2 2 2 2 2 2 2 9916800 18078000 156200 15906000 13126000 11291000 12072000 14621000 12152000 12771000 14030000 9234700 16860000 1012700 16311000 12569000 11862000 12303000 14642000 12426000 12549000 13476000 4 4 4 4 4 4 4 4 4 4 4 3947900000 2191800000 1756000000 1443 1006 1353 8771;8772;8773;8774;8775;8776;8777 10540;10541;10542;10543;10544;10545;10546 10541 7 AMQDAEVSKSDIGEVILVGGMTR 2 Oxidation (M) 2437.1829 0.18287469 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 2 1 By MS/MS By MS/MS 5 0.894 2 1 2 2 3 61.784 61.8 4 1.9399E-07 18284 20211116_3444_TMUAki_TMT10x_S_F5 87.511 75.723 20635000 35895000 238350 33209000 23112000 31024000 23547000 29839000 30163000 28464000 29109000 19214000 33484000 1845400 34036000 22178000 31713000 24067000 30357000 30359000 27856000 28113000 7 7 4 7 7 7 7 7 7 7 7 7087300 11863000 112510 11148000 8441000 16314000 9445900 9917900 10556000 9536000 9521700 6599800 11066000 711410 11501000 8125700 16158000 9563200 10395000 10654000 9329100 9217300 2 2 2 2 2 2 2 2 2 2 2 13548000 24033000 125830 22061000 14671000 14710000 14101000 19921000 19606000 18928000 19588000 12614000 22418000 1134000 22535000 14053000 15556000 14503000 19962000 19704000 18527000 18896000 5 5 2 5 5 5 5 5 5 5 5 4240100000 1969600000 2270500000 1444 972 1354 8778;8779;8780;8781;8782 10547;10548;10549;10550;10551;10552;10553 10550 1231;1232 7 AMQDAEVSKSDIGEVILVGGMTR Oxidation (M) 2421.188 0.18796006 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 1 1 By MS/MS By MS/MS 5.17 0.898 2 1 3 4 2 67.738 67.737 3;4 4.5174E-11 20916 20211116_3444_TMUAki_TMT10x_S_F5 111.47 98.287 32290000 49993000 133320 48503000 34251000 44772000 35358000 25457000 20800000 26704000 35631000 30065000 46643000 2621700 49531000 32864000 45407000 35357000 26895000 22323000 26029000 33913000 6 6 3 6 6 6 6 6 6 6 6 21961000 32995000 94423 33152000 21907000 35459000 24645000 16785000 14229000 18064000 23450000 20448000 30788000 1874600 33844000 21078000 35561000 24533000 18046000 15259000 17589000 22336000 4 4 2 4 4 4 4 4 4 4 4 10330000 16998000 38901 15352000 12343000 9312700 10714000 8672100 6570500 8640200 12182000 9616800 15855000 747150 15687000 11785000 9845200 10824000 8848500 7064700 8439800 11577000 2 2 1 2 2 2 2 2 2 2 2 3057000000 1917000000 1140000000 1445 972 1354 8783;8784;8785;8786;8787;8788 10554;10555;10556;10557;10558;10559 10558 1231;1232 6 AMQDAEVSKSDIGEVILVGGMTR Unmodified 2405.193 0.19304544 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 73.639 73.601 3 2.9855E-46 23156 20211116_3434_TMUAki_TMT10x_P_F6 214.08 200.35 43625000 68422000 249590 69687000 49886000 36192000 50493000 14868000 13027000 19403000 41958000 40619000 63850000 3646000 70502000 47845000 38457000 50026000 16329000 15919000 18763000 39579000 9 9 4 9 9 9 9 9 9 9 9 18957000 29483000 104100 29724000 20297000 21334000 25480000 6210300 5456400 7850500 17689000 17651000 27512000 1633400 30181000 19594000 21912000 24955000 7126600 6861200 7599600 16685000 4 4 1 4 4 4 4 4 4 4 4 24668000 38939000 145480 39963000 29590000 14858000 25013000 8658000 7570500 11552000 24269000 22968000 36338000 2012600 40321000 28250000 16545000 25071000 9202400 9057500 11163000 22894000 5 5 3 5 5 5 5 5 5 5 5 2873100000 925260000 1947800000 1446 972 1354 8789;8790;8791 10560;10561;10562;10563;10564;10565;10566;10567;10568 10561 9 AMQETVDALR Oxidation (M) 1148.5496 0.54957253 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4;Q7Z4S6-6 KIF21A Kinesin-like protein KIF21A yes no 0 0 1 0 By MS/MS 2 0 1 1 34.351 34.128 2 0.013436 9127 20211116_3429_TMUAki_TMT10x_P_F2 68.76 49.503 495120 791080 3066.9 810710 952680 954330 600920 446270 511510 436480 629760 461030 738230 50316 827820 904810 951930 625160 479080 528490 426690 603840 1 1 1 1 1 1 1 1 1 1 1 495120 791080 3066.9 810710 952680 954330 600920 446270 511510 436480 629760 461030 738230 50316 827820 904810 951930 625160 479080 528490 426690 603840 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33289000 33289000 0 1447 2082 1355 8792 10569 10569 2583 1 AMQETVDALR Unmodified 1132.5547 0.55465791 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4;Q7Z4S6-6 KIF21A Kinesin-like protein KIF21A yes no 0 0 0 0 By MS/MS 4 0 1 1 44.142 44.353 2 3.3811E-07 12480 20211116_3442_TMUAki_TMT10x_S_F4 115.23 74.659 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1448 2082 1355 8793 10570 10570 1 AMQHAEVYYK Oxidation (M) 1254.5703 0.57030797 2692 Q9BVG4 PBDC1 Protein PBDC1 yes yes 0 0 1 0 By MS/MS 5 0 1 1 31.395 31.537 3 0.0034703 6165 20211116_3444_TMUAki_TMT10x_S_F5 67.207 41.548 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1449 2692 1356 8794 10571 10571 2896 1 AMQNFLQLPEAERDR Oxidation (M) 1832.8839 0.88393097 1488 Q01826;Q01826-2 SATB1 DNA-binding protein SATB1 yes no 0 0 1 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 46.885 47.047 3 6.596E-05 13184 20211116_3431_TMUAki_TMT10x_P_F4 92.65 76.427 9773000 16208000 297340 18076000 12890000 16659000 10317000 16842000 17503000 14986000 15602000 9101900 15131000 1131000 18288000 12313000 17062000 10822000 17059000 17425000 14712000 15109000 5 5 5 5 5 5 5 5 5 5 5 4601500 7107100 125410 8364900 8692200 11536000 6204200 7580600 7819500 6430800 6931500 4285400 6636400 555660 8492200 8279600 11468000 6473300 7872700 7852800 6328100 6714100 2 2 2 2 2 2 2 2 2 2 2 5171500 9101300 171930 9711200 4197700 5122600 4112400 9261300 9683800 8555000 8670000 4816500 8494800 575350 9795300 4033200 5594600 4348300 9186300 9571800 8384300 8395000 3 3 3 3 3 3 3 3 3 3 3 1825900000 913750000 912140000 1450 1488 1357 8795;8796;8797;8798 10572;10573;10574;10575;10576 10572 2020 5 AMTGVEQWPYR Oxidation (M) 1352.6183 0.6183208 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 1 0 By MS/MS By MS/MS 5.17 0.687 1 3 2 4 2 44.647 44.769 2;3 1.0379E-07 11306 20211116_3434_TMUAki_TMT10x_P_F6 141.25 120.3 8865900 15155000 90929 18443000 19658000 17244000 11314000 8698600 8957400 8313900 12932000 8255200 14154000 908740 18564000 18640000 17449000 11840000 9263900 9356800 8135700 12352000 7 7 3 7 7 7 7 7 7 7 7 6081100 10393000 90929 12474000 17784000 15857000 9786700 6344800 6587400 5886300 9019900 5662700 9705600 742170 12629000 16856000 15731000 10246000 6917300 6927900 5767800 8625900 5 5 3 5 5 5 5 5 5 5 5 2784800 4762100 0 5968400 1873400 1387900 1527500 2353800 2370000 2427600 3912400 2592500 4448100 166580 5935100 1784300 1718100 1593500 2346600 2428900 2367900 3726400 2 2 0 2 2 2 2 2 2 2 2 1675700000 1270400000 405270000 1451 1094 1358 8799;8800;8801;8802;8803;8804 10577;10578;10579;10580;10581;10582;10583 10581 1441 7 AMTGVEQWPYR Unmodified 1336.6234 0.62340617 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 52.787 53.39 2 3.6759E-08 17255 20211116_3446_TMUAki_TMT10x_S_F7 150.61 137.74 11219000 19145000 15860 24992000 13987000 10700000 10804000 7849600 7043300 7708600 13724000 10446000 17886000 975940 24870000 13332000 11718000 11009000 8120600 7567000 7534400 13032000 3 3 2 3 3 3 3 3 3 3 3 3255600 5339800 12519 6828100 6873000 5979700 5112700 2624900 2300300 2289700 3918500 3031400 4988100 332250 6848000 6546700 6068700 5191100 2828100 2520600 2250100 3729900 1 1 1 1 1 1 1 1 1 1 1 7963700 13805000 3341.1 18164000 7114200 4719900 5691200 5224700 4743000 5418800 9805200 7415000 12898000 643700 18022000 6785400 5648900 5817900 5292500 5046300 5284300 9302000 2 2 1 2 2 2 2 2 2 2 2 955310000 561640000 393670000 1452 1094 1358 8805;8806;8807;8808 10584;10585;10586;10587;10588 10588 5 AMVDPAQTVEQR Unmodified 1343.6503 0.65034921 1135 P50416;P50416-2 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform yes no 0 0 0 0 By MS/MS 3 0 1 1 38.658 38.701 2 0.0052183 11457 20211116_3430_TMUAki_TMT10x_P_F3 68.836 51.872 89449 140570 2771.6 193230 346730 244860 118630 122480 136010 101740 143260 83306 131370 13602 194180 326890 243520 132800 130090 137860 100220 137980 1 1 1 1 1 1 1 1 1 1 1 89449 140570 2771.6 193230 346730 244860 118630 122480 136010 101740 143260 83306 131370 13602 194180 326890 243520 132800 130090 137860 100220 137980 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4204500 4204500 0 1453 1135 1359 8809 10589 10589 1 AMVEYEIDLQK Oxidation (M) 1353.6486 0.64861787 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 1 0 By MS/MS By MS/MS 2.82 0.936 1 3 4 3 6 5 57.144 56.984 2;3 1.0588E-11 18443 20211116_3429_TMUAki_TMT10x_P_F2 132.32 106.93 40783000 66467000 858060 68382000 52420000 71683000 48736000 58437000 57557000 56473000 58383000 37978000 62028000 4195000 69675000 50212000 72525000 49900000 60025000 58198000 55235000 56295000 13 13 9 13 13 13 13 13 13 13 13 20352000 31381000 417460 32224000 29597000 48485000 26565000 29128000 29654000 28626000 29109000 18953000 29285000 2196200 33058000 28328000 47956000 27200000 30577000 30014000 27979000 28097000 6 6 5 6 6 6 6 6 6 6 6 20430000 35086000 440600 36157000 22823000 23198000 22171000 29309000 27903000 27846000 29274000 19025000 32743000 1998800 36617000 21885000 24569000 22701000 29447000 28184000 27256000 28197000 7 7 4 7 7 7 7 7 7 7 7 4074700000 1964300000 2110400000 1454 586 1360 8810;8811;8812;8813;8814;8815;8816;8817;8818;8819;8820 10590;10591;10592;10593;10594;10595;10596;10597;10598;10599;10600;10601;10602 10592 555 13 AMVEYEIDLQK Unmodified 1337.6537 0.65370325 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 64.283 64.062 2;3 0.00015289 20598 20211116_3442_TMUAki_TMT10x_S_F4 91.656 62.486 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1455 586 1360 8821;8822 10603;10604 10604 2 AMYIDTEGTFRPER Oxidation (M) 1700.7828 0.78281994 1531 Q06609;Q06609-3;Q06609-4 RAD51 DNA repair protein RAD51 homolog 1 yes no 0 0 1 1 By MS/MS 4.5 0.5 1 1 2 38.962 39.143 3 0.0083309 9583 20211116_3444_TMUAki_TMT10x_S_F5 62.162 52.729 485170 872010 27593 1009800 497140 394850 386760 602470 575150 521260 730950 451940 814190 66107 1011200 475570 444850 403910 599640 582400 512440 700300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 485170 872010 27593 1009800 497140 394850 386760 602470 575150 521260 730950 451940 814190 66107 1011200 475570 444850 403910 599640 582400 512440 700300 1 1 1 1 1 1 1 1 1 1 1 45183000 0 45183000 1456 1531 1361 8823;8824 10605;10606 10606 2064 2 ANAMLDEDEDERVDEAALR Oxidation (M) 2176.9543 0.95425496 2653 Q9BSL1 UBAC1 Ubiquitin-associated domain-containing protein 1 yes yes 0 0 1 1 By MS/MS 1 0 1 1 41.558 41.396 3 1.5892E-15 12561 20211116_3439_TMUAki_TMT10x_S_F1 132.59 121.73 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1457 2653 1362 8825 10607 10607 2881 1 ANATVDGLEQGYVVCPSEKR Unmodified 2192.0532 0.053181143 2976 Q9NVP1 DDX18 ATP-dependent RNA helicase DDX18 yes yes 0 0 0 1 By MS/MS 5 0 1 1 49.583 49.774 3 0.10235 14480 20211116_3433_TMUAki_TMT10x_P_F5 31.378 9.3678 1118500 2269800 39714 2812600 2643500 3130500 1823600 1583800 1675600 1434700 1767900 1041700 2120000 151100 2835700 2516500 3134800 1888000 1683900 1714400 1407400 1702600 1 1 1 1 1 1 1 1 1 1 1 1118500 2269800 39714 2812600 2643500 3130500 1823600 1583800 1675600 1434700 1767900 1041700 2120000 151100 2835700 2516500 3134800 1888000 1683900 1714400 1407400 1702600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 815440000 815440000 0 1458 2976 1363 8826 10608 10608 1 ANCIDSTASAEAVFASEVK Unmodified 1968.9099 0.90987095 765 P22087 FBL rRNA 2'-O-methyltransferase fibrillarin yes yes 0 0 0 0 By MS/MS By MS/MS 3.73 1.21 2 3 3 2 1 6 5 68.379 68.235 2;3 8.7845E-77 21849 20211116_3431_TMUAki_TMT10x_P_F4 265.46 238.67 48201000 81863000 1271300 81171000 61699000 72920000 56621000 54176000 48503000 52643000 60645000 44888000 76384000 5186200 82733000 59098000 74374000 57447000 55983000 50129000 51477000 58126000 15 15 12 15 15 15 15 15 15 15 15 21456000 34541000 288110 33934000 26094000 44709000 26970000 23785000 21272000 22109000 24689000 19978000 32228000 1954900 34822000 25049000 44412000 27135000 25189000 22011000 21662000 23711000 6 6 4 6 6 6 6 6 6 6 6 26746000 47322000 983170 47237000 35605000 28212000 29651000 30391000 27231000 30534000 35956000 24910000 44156000 3231300 47911000 34048000 29963000 30313000 30794000 28118000 29815000 34415000 9 9 8 9 9 9 9 9 9 9 9 10349000000 5216400000 5132700000 1459 765 1364 8827;8828;8829;8830;8831;8832;8833;8834;8835;8836;8837 10609;10610;10611;10612;10613;10614;10615;10616;10617;10618;10619;10620;10621;10622;10623;10624;10625 10615 17 ANCIDSTASAEAVFASEVKK Unmodified 2097.0048 0.0048339665 765 P22087 FBL rRNA 2'-O-methyltransferase fibrillarin yes yes 0 0 0 1 By MS/MS 5.5 0.5 1 1 2 62.827 62.915 3 1.5443E-18 18736 20211116_3434_TMUAki_TMT10x_P_F6 155.87 143.49 12438000 21154000 122180 20993000 16503000 29273000 16849000 18626000 14791000 15756000 16974000 11582000 19739000 1202000 21551000 15840000 29071000 17009000 19389000 15215000 15507000 16306000 3 3 3 3 3 3 3 3 3 3 3 12438000 21154000 122180 20993000 16503000 29273000 16849000 18626000 14791000 15756000 16974000 11582000 19739000 1202000 21551000 15840000 29071000 17009000 19389000 15215000 15507000 16306000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1442500000 1442500000 0 1460 765 1365 8838;8839 10626;10627;10628 10628 3 ANCSDNEFTQALTAAIPPESLTR Unmodified 2505.1806 0.1805665 1872 Q16891;Q16891-2;Q16891-4;Q16891-3 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 By MS/MS 6 0 1 1 77.183 77.152 3 1.8381E-07 25006 20211116_3445_TMUAki_TMT10x_S_F6 88.239 83.971 4365300 7397400 0 6537400 6260200 5087300 6158400 4686100 4168900 5020800 5716900 4064300 6899300 360800 6708300 5998200 5263000 6190400 4794700 4383100 4889800 5467000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4365300 7397400 0 6537400 6260200 5087300 6158400 4686100 4168900 5020800 5716900 4064300 6899300 360800 6708300 5998200 5263000 6190400 4794700 4383100 4889800 5467000 2 2 0 2 2 2 2 2 2 2 2 791970000 0 791970000 1461 1872 1366 8840 10629;10630 10630 2 ANDDIIVNWVNR Unmodified 1427.7157 0.71572665 658 P13797;P13797-3;P13797-2 PLS3 Plastin-3 yes no 0 0 0 0 By MS/MS 5 0 1 1 64.608 64.665 2 0.095801 19541 20211116_3444_TMUAki_TMT10x_S_F5 50.275 30.488 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1462 658 1367 8841 10631 10631 1 ANDYANAVLQALSNVPPLR Unmodified 2025.0643 0.064338176 1906 Q53GS9;Q53GS9-2;Q53GS9-3 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.14 0.833 2 2 3 3 4 80.663 80.641 2;3 1.547E-23 27362 20211116_3442_TMUAki_TMT10x_S_F4 168.05 143.67 8096600 14285000 261270 14276000 9277600 12745000 10712000 8254700 8957100 9780000 11397000 7540600 13330000 912470 14541000 8946500 12977000 10736000 8665100 9275600 9488800 10918000 6 6 5 6 6 6 6 6 6 6 6 4618000 8676400 223480 8290700 5081500 8717100 5953500 4838000 5153200 5619200 6522300 4301500 8094600 597630 8491500 4907800 8766900 5968500 5138100 5326100 5455800 6249400 3 3 3 3 3 3 3 3 3 3 3 3478700 5609000 37787 5985000 4196100 4027600 4758000 3416700 3803900 4160800 4874300 3239100 5235200 314840 6049800 4038600 4210100 4767300 3527000 3949500 4033000 4668900 3 3 2 3 3 3 3 3 3 3 3 4605000000 2580800000 2024100000 1463 1906 1368 8842;8843;8844;8845;8846;8847;8848 10632;10633;10634;10635;10636;10637;10638 10638 7 ANEHQGIGFLNDPR Unmodified 1566.7539 0.75390307 2376 Q92900;Q92900-2 UPF1 Regulator of nonsense transcripts 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 37.789 37.865 3 9.8655E-06 10131 20211116_3433_TMUAki_TMT10x_P_F5 101.2 75.813 2363200 3940000 11096 4630800 4741700 4236000 2861000 3408500 3477200 2838300 3382100 2200300 3679000 226050 4669500 4499100 4321100 3019500 3490200 3507200 2795500 3265500 8 8 4 8 8 8 8 8 8 8 8 1337900 2180100 1944 2601000 3826000 3380700 1965900 2067900 2022200 1629500 1929300 1245700 2035800 139310 2635400 3621400 3366400 2093100 2155700 2051500 1609500 1864000 2 2 1 2 2 2 2 2 2 2 2 1025200 1759900 9152.5 2029800 915710 855240 895080 1340500 1455000 1208800 1452800 954620 1643200 86741 2034100 877720 954620 926330 1334500 1455700 1186000 1401500 6 6 3 6 6 6 6 6 6 6 6 287990000 227790000 60202000 1464 2376 1369 8849;8850;8851;8852 10639;10640;10641;10642;10643;10644;10645;10646 10639 8 ANEHQGIGFLNDPRR Unmodified 1722.855 0.8550141 2376 Q92900;Q92900-2 UPF1 Regulator of nonsense transcripts 1 yes no 0 0 0 1 By MS/MS 5 0 1 1 31.803 31.967 4 0.070909 6299 20211116_3444_TMUAki_TMT10x_S_F5 33.624 20.424 72822 118680 2954.1 117360 71987 54667 62996 57174 50865 58433 106630 67826 110730 8778.9 118880 68977 59614 63994 58042 54256 57017 101140 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72822 118680 2954.1 117360 71987 54667 62996 57174 50865 58433 106630 67826 110730 8778.9 118880 68977 59614 63994 58042 54256 57017 101140 1 1 1 1 1 1 1 1 1 1 1 4134300 0 4134300 1465 2376 1370 8853 10647 10647 1 ANELPQPPVPEPANAGK Unmodified 1727.8842 0.88424855 1428 P78347;P78347-2;P78347-4;P78347-3 GTF2I General transcription factor II-I yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 52.216 52.4 3 0.0004396 15598 20211116_3433_TMUAki_TMT10x_P_F5 63.46 44.627 9645700 15542000 111720 18629000 17490000 19710000 11048000 13170000 14065000 12197000 12963000 8981500 14514000 954560 18803000 16611000 19866000 11636000 13691000 14138000 11953000 12539000 4 4 2 4 4 4 4 4 4 4 4 7484900 12021000 111720 14349000 15732000 18298000 9612700 10195000 10914000 9691900 10165000 6969900 11226000 824190 14533000 14936000 18216000 10111000 10759000 11019000 9486300 9828800 3 3 2 3 3 3 3 3 3 3 3 2160800 3520800 0 4279900 1758200 1411600 1435100 2975500 3151600 2505300 2798200 2011600 3288200 130370 4269700 1674900 1650100 1525700 2932200 3118600 2466200 2710300 1 1 0 1 1 1 1 1 1 1 1 820300000 590910000 229390000 1466 1428 1371 8854;8855;8856 10648;10649;10650;10651 10649 4 ANFELTSVTQFAAHQENKR Unmodified 2190.0818 0.081779155 2243 Q8NEU8;Q8NEU8-2;Q8NEU8-3 APPL2 DCC-interacting protein 13-beta yes no 0 0 0 1 By matching By MS/MS 8 0 2 1 1 53.976 53.993 4 7.6786E-41 15240 20211116_3447_TMUAki_TMT10x_S_F8 202.35 178.31 6310000 11308000 175840 10535000 6636300 6573200 6078200 9337000 8728800 8519200 8637900 5876600 10549000 691590 10743000 6359900 7002800 6276600 9329300 8760800 8354000 8335500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6310000 11308000 175840 10535000 6636300 6573200 6078200 9337000 8728800 8519200 8637900 5876600 10549000 691590 10743000 6359900 7002800 6276600 9329300 8760800 8354000 8335500 2 2 2 2 2 2 2 2 2 2 2 1071100000 624570000 446500000 1467 2243 1372 8857;8858 10652;10653 10653 2 ANFGSRPFAYAEGQAHR Unmodified 1877.8921 0.89212789 3297 Q9Y4D8;Q9Y4D8-2;Q9Y4D8-4 HECTD4 Probable E3 ubiquitin-protein ligase HECTD4 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 36.876 36.847 4 8.5618E-13 8712 20211116_3428_TMUAki_TMT10x_P_F1 140.89 130.3 668790 1130400 2650.2 1268000 1041100 786260 684700 612190 621790 549140 1006100 622700 1055300 59578 1276600 989220 826790 711210 629330 648950 538920 958640 2 2 1 2 2 2 2 2 2 2 2 276930 483250 0 486790 683170 540290 377900 286580 317280 259290 422610 257820 450940 25096 497160 647150 541410 397410 303360 329170 254360 404420 1 1 0 1 1 1 1 1 1 1 1 391860 647110 2650.2 781170 357930 245970 306800 325610 304510 289850 583480 364880 604320 34483 779450 342070 285380 313800 325970 319780 284560 554220 1 1 1 1 1 1 1 1 1 1 1 79879000 47492000 32387000 1468 3297 1373 8859;8860 10654;10655 10654 2 ANGTTVHVGIHPSK Unmodified 1416.7474 0.74736113 1306 P61254;Q9UNX3 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 0 0 0 0 By MS/MS By matching 1.67 0.471 1 2 2 1 30.89 30.826 4 3.8824E-14 7845 20211116_3429_TMUAki_TMT10x_P_F2 152.34 128.73 650310 992460 8498.8 988940 787560 1147900 702200 594590 664940 568280 739740 605570 926060 63758 1011500 753520 1147200 715580 631670 680750 556100 711290 2 2 2 2 2 2 2 2 2 2 2 650310 992460 8498.8 988940 787560 1147900 702200 594590 664940 568280 739740 605570 926060 63758 1011500 753520 1147200 715580 631670 680750 556100 711290 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 89269000 88855000 414060 1469 1306 1374 8861;8862;8863 10656;10657 10657 2 ANHAELILANPSPVLIYQISSSETR Unmodified 2722.429 0.42899369 1713 Q14534 SQLE Squalene monooxygenase yes yes 0 0 0 0 By MS/MS 8 0 1 1 74.23 74.096 3 6.2989E-06 23471 20211116_3447_TMUAki_TMT10x_S_F8 78.429 64.119 3627900 6340800 240650 5152300 4809400 5653800 6158600 5105100 4438600 5247000 5363700 3379700 5912200 541600 5347700 4660000 5716400 6123200 5222500 4623600 5118600 5145600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3627900 6340800 240650 5152300 4809400 5653800 6158600 5105100 4438600 5247000 5363700 3379700 5912200 541600 5347700 4660000 5716400 6123200 5222500 4623600 5118600 5145600 2 2 2 2 2 2 2 2 2 2 2 437720000 0 437720000 1470 1713 1375 8864 10658;10659 10659 2 ANHEEVLAAGK Unmodified 1137.5778 0.57783619 469 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 0 0 By MS/MS 4 0 1 1 31.605 31.635 3 4.0946E-05 7014 20211116_3431_TMUAki_TMT10x_P_F4 95.094 60.373 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1471 469 1376 8865 10660 10660 1 ANHFFTVTDPR Unmodified 1303.6309 0.63093439 2841 Q9H9B4 SFXN1 Sideroflexin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.603 2 7 2 3 8 38.689 38.979 3 1.2483E-05 11299 20211116_3435_TMUAki_TMT10x_P_F7 102.4 78.057 7174500 10712000 98382 12730000 15410000 11368000 7764300 7882100 9846900 7345000 10109000 6680500 10003000 751290 12824000 14587000 11587000 8340000 8173800 9935700 7195700 9743400 9 9 5 9 9 9 9 9 9 9 9 4497500 6546200 64771 7977700 12580000 9290200 5312200 5002500 5991900 4350500 6378200 4187700 6113600 497680 8057100 11880000 9286900 5789400 5283100 6079700 4275800 6140900 4 4 1 4 4 4 4 4 4 4 4 2677000 4165700 33612 4752400 2830700 2077900 2452100 2879600 3855000 2994500 3730500 2492800 3889300 253600 4766800 2706700 2299900 2550500 2890700 3856000 2919800 3602500 5 5 4 5 5 5 5 5 5 5 5 1001300000 778240000 223020000 1472 2841 1377 8866;8867;8868;8869;8870;8871;8872;8873;8874;8875;8876 10661;10662;10663;10664;10665;10666;10667;10668;10669;10670;10671;10672;10673;10674 10663 14 ANHSFTPNCIYDMFVHPR Oxidation (M) 2220.9833 0.98332744 2292 Q8WTS6 SETD7 Histone-lysine N-methyltransferase SETD7 yes yes 0 0 1 0 By MS/MS 1 0 1 1 55.377 55.076 4 0.01038 18078 20211116_3439_TMUAki_TMT10x_S_F1 48.288 44.045 2251200 3583100 0 3555200 2093200 2034300 2001600 2838300 2892000 2538200 2890300 2095900 3343300 159750 3606100 2003100 2184300 2062700 2836200 2903100 2491300 2788300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2251200 3583100 0 3555200 2093200 2034300 2001600 2838300 2892000 2538200 2890300 2095900 3343300 159750 3606100 2003100 2184300 2062700 2836200 2903100 2491300 2788300 1 1 0 1 1 1 1 1 1 1 1 93055000 0 93055000 1473 2292 1378 8877 10675 10675 2659 1 ANIGDAQAMGQQPITFLR Unmodified 1929.9731 0.97308033 2276 Q8TD30 GPT2 Alanine aminotransferase 2 yes yes 0 0 0 0 By MS/MS 8 0 1 1 65.902 66.058 3 0.088047 20645 20211116_3436_TMUAki_TMT10x_P_F8 31.279 12.446 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1474 2276 1379 8878 10676 10676 1 ANINVENAFFTLAR Unmodified 1578.8154 0.8154407 1284 P61006 RAB8A Ras-related protein Rab-8A yes yes 0 0 0 0 By MS/MS 1 0 1 1 77.388 77.388 2 2.6798E-09 25201 20211116_3428_TMUAki_TMT10x_P_F1 112.44 68.128 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1475 1284 1380 8879 10677 10677 1 ANITAIR Unmodified 757.44464 0.44463717 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 By MS/MS 5 0 1 1 33.039 33.216 2 0.049051 6842 20211116_3444_TMUAki_TMT10x_S_F5 69.628 13.617 339130 595410 5914.9 605170 375540 302750 421520 330340 374230 319990 491590 315810 555620 34139 612170 361600 327700 423700 334170 386950 312950 470590 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 339130 595410 5914.9 605170 375540 302750 421520 330340 374230 319990 491590 315810 555620 34139 612170 361600 327700 423700 334170 386950 312950 470590 1 1 1 1 1 1 1 1 1 1 1 7030500 0 7030500 1476 1094 1381 8880 10678 10678 1 ANIVHLMLSSPEQIQK Unmodified 1806.9662 0.96620404 1234 P55060;P55060-3;P55060-4;P55060-2 CSE1L Exportin-2 yes no 0 0 0 0 By MS/MS By MS/MS 3.25 2.77 2 4 2 5 3 65.501 65.281 3;4 6.1116E-22 20208 20211116_3436_TMUAki_TMT10x_P_F8 151.9 137.87 35085000 54149000 64814 65486000 37847000 38948000 37991000 20571000 16002000 19547000 35132000 32665000 50569000 2011700 65609000 36274000 40902000 37848000 21812000 17920000 19133000 33299000 8 8 2 8 8 8 8 8 8 8 8 15608000 23367000 5005.3 25621000 17232000 22960000 18001000 8064700 6998200 8580500 14415000 14531000 21812000 1224100 25939000 16536000 23219000 17878000 8966800 7864100 8359000 13676000 3 3 1 3 3 3 3 3 3 3 3 19477000 30782000 59809 39864000 20615000 15989000 19990000 12506000 9003800 10966000 20717000 18134000 28757000 787670 39670000 19738000 17682000 19969000 12845000 10056000 10774000 19622000 5 5 1 5 5 5 5 5 5 5 5 7411700000 4575000000 2836700000 1477 1234 1382 8881;8882;8883;8884;8885;8886;8887;8888 10679;10680;10681;10682;10683;10684;10685;10686;10687;10688 10682 10 ANIVHLMLSSPEQIQK Oxidation (M) 1822.9611 0.96111866 1234 P55060;P55060-3;P55060-4;P55060-2 CSE1L Exportin-2 yes no 0 0 1 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 53.362 53.673 3 2.9992E-16 15093 20211116_3447_TMUAki_TMT10x_S_F8 159.34 146.58 16898000 29029000 157820 28905000 21928000 30154000 17746000 29294000 28788000 28127000 24598000 15735000 27086000 1223600 29515000 20929000 30623000 18561000 29793000 28654000 27518000 23858000 5 5 3 5 5 5 5 5 5 5 5 7205600 12201000 5241.6 12676000 12361000 19693000 9084600 11380000 11842000 12096000 9722800 6709200 11387000 291410 13003000 11771000 19442000 9471600 12012000 11851000 11785000 9444900 2 2 1 2 2 2 2 2 2 2 2 9692700 16827000 152580 16229000 9566700 10461000 8661000 17914000 16945000 16030000 14875000 9025900 15700000 932190 16512000 9158700 11180000 9089100 17781000 16803000 15734000 14413000 3 3 2 3 3 3 3 3 3 3 3 7853600000 3575200000 4278400000 1478 1234 1382 8889;8890;8891;8892 10689;10690;10691;10692;10693 10693 1659 5 ANKLDHVVTIIK Unmodified 1349.8031 0.8030851 2612 Q99873;Q99873-2;Q99873-3;Q99873-5 PRMT1 Protein arginine N-methyltransferase 1 yes no 0 0 0 1 By MS/MS By MS/MS 4 2.83 2 1 2 1 49.001 48.906 4 3.9566E-05 15113 20211116_3429_TMUAki_TMT10x_P_F2 100.55 84.328 3783500 5719700 54932 6808100 8402300 7753500 4304400 5502700 5726100 4727900 5512900 3523300 5341100 429570 6882600 7956800 7789800 4624500 5685100 5755600 4649400 5324700 3 3 3 3 3 3 3 3 3 3 3 2636800 3948200 49260 4703700 7469000 6788700 3272400 3996100 4110900 3320100 3799100 2455500 3686900 332200 4776400 7059100 6724500 3564800 4183600 4134400 3270400 3674500 2 2 2 2 2 2 2 2 2 2 2 1146700 1771400 5672.2 2104300 933340 964740 1032000 1506600 1615200 1407800 1713700 1067700 1654200 97368 2106200 897760 1065300 1059700 1501500 1621200 1379000 1650100 1 1 1 1 1 1 1 1 1 1 1 1045800000 701370000 344390000 1479 2612 1383 8893;8894;8895 10694;10695;10696 10694 3 ANKTPLRPLDPTR Unmodified 1477.8365 0.83651049 1511 Q04637;Q04637-3;Q04637-8;Q04637-5;Q04637-4;Q04637-9;Q04637-6;Q04637-7 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 2 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 33.636 33.405 4 8.7268E-05 10361 20211116_3441_TMUAki_TMT10x_S_F3 97.949 79.354 762320 1453800 11212 1110400 1981700 1886100 1116300 1485200 1654300 1407800 1580700 709850 1355300 87147 1168700 1878900 1864600 1194200 1527900 1656800 1378100 1527100 2 2 1 2 2 2 2 2 2 2 2 419570 832650 0 642770 1531800 1409400 703050 814820 888650 747630 882520 390630 776240 46781 680610 1447700 1375200 762210 856450 895710 732940 851530 1 1 0 1 1 1 1 1 1 1 1 342750 621150 11212 467660 449910 476670 413210 670360 765680 660130 698130 319220 579030 40366 488070 431150 489390 431970 671500 761130 645140 675560 1 1 1 1 1 1 1 1 1 1 1 69486000 41572000 27914000 1480 1511 1384 8896;8897 10697;10698 10698 2 ANLLNNEAHAITMQVTK Oxidation (M) 1882.9571 0.95709591 1041 P46063 RECQL ATP-dependent DNA helicase Q1 yes yes 0 0 1 0 By MS/MS By MS/MS 7 0 2 1 1 54.688 55.309 3 4.7051E-11 17369 20211116_3435_TMUAki_TMT10x_P_F7 129.36 111.87 12440000 23255000 54105 21277000 18861000 26122000 14694000 30114000 28159000 25572000 22593000 11583000 21692000 1032900 21918000 17974000 26402000 15540000 30280000 27860000 25162000 21967000 5 5 2 5 5 5 5 5 5 5 5 5306800 9602500 0 8469200 9984000 17722000 8143600 12371000 11298000 10329000 9082200 4940100 8955900 379450 8858400 9518600 17363000 8454200 12787000 11277000 10172000 8829800 2 2 0 2 2 2 2 2 2 2 2 7133700 13653000 54105 12808000 8877200 8400400 6550700 17743000 16861000 15244000 13511000 6642500 12736000 653440 13060000 8455800 9039500 7085400 17494000 16583000 14991000 13137000 3 3 2 3 3 3 3 3 3 3 3 2467500000 948730000 1518700000 1481 1041 1385 8898;8899 10699;10700;10701;10702;10703 10700 1346 5 ANLLNNEAHAITMQVTK Unmodified 1866.9622 0.96218129 1041 P46063 RECQL ATP-dependent DNA helicase Q1 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 58.608 58.962 3 1.4533E-11 17242 20211116_3447_TMUAki_TMT10x_S_F8 137.45 115.92 30018000 51413000 183930 53496000 39413000 46920000 36479000 33711000 28110000 31875000 39500000 27951000 47982000 2787400 54329000 37728000 47908000 36896000 34886000 29367000 31206000 37751000 7 7 5 7 7 7 7 7 7 7 7 17964000 29802000 145430 30616000 25301000 36089000 25379000 19552000 16048000 18295000 23084000 16727000 27812000 1723300 31258000 24270000 36056000 25450000 20676000 16984000 17919000 22051000 4 4 2 4 4 4 4 4 4 4 4 12054000 21611000 38498 22880000 14112000 10831000 11099000 14159000 12062000 13580000 16415000 11224000 20170000 1064100 23071000 13457000 11852000 11446000 14210000 12383000 13287000 15700000 3 3 3 3 3 3 3 3 3 3 3 3654200000 1952000000 1702300000 1482 1041 1385 8900;8901;8902;8903 10704;10705;10706;10707;10708;10709;10710 10710 7 ANLQELDQFLGPYPYATLK Unmodified 2180.1154 0.11537069 3258 Q9Y312 AAR2 Protein AAR2 homolog yes yes 0 0 0 0 By MS/MS 8 0 1 1 79.858 79.844 3 3.4285E-06 25746 20211116_3447_TMUAki_TMT10x_S_F8 88.176 23.676 2664700 4156600 81979 3644800 3524400 2921300 3901100 2424700 2379800 2614200 3054900 2481700 3876600 309360 3743700 3393800 3009500 3890300 2496000 2511600 2545300 2926000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2664700 4156600 81979 3644800 3524400 2921300 3901100 2424700 2379800 2614200 3054900 2481700 3876600 309360 3743700 3393800 3009500 3890300 2496000 2511600 2545300 2926000 1 1 1 1 1 1 1 1 1 1 1 535320000 0 535320000 1483 3258 1386 8904 10711 10711 1 ANLQELDQFLGPYPYATLKK Unmodified 2308.2103 0.21033371 3258 Q9Y312 AAR2 Protein AAR2 homolog yes yes 0 0 0 1 By MS/MS 2 0 1 1 78.127 78.095 4 0.0038016 25720 20211116_3440_TMUAki_TMT10x_S_F2 56.055 46.891 5425400 8377200 60288 8201500 6835600 5856400 6406400 6268200 5594800 5954700 6823800 5052000 7816100 525740 8344200 6547200 6120000 6495600 6343000 5770900 5828600 6544600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5425400 8377200 60288 8201500 6835600 5856400 6406400 6268200 5594800 5954700 6823800 5052000 7816100 525740 8344200 6547200 6120000 6495600 6343000 5770900 5828600 6544600 1 1 1 1 1 1 1 1 1 1 1 693480000 0 693480000 1484 3258 1387 8905 10712 10712 1 ANLQIDQINTDLNLER Unmodified 1868.9592 0.9592044 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.806 1 4 4 1 5 5 66.441 66.183 2;3 5.8432E-81 21507 20211116_3442_TMUAki_TMT10x_S_F4 333.44 285.89 16807000 29026000 371330 26787000 20524000 25288000 20161000 20171000 18687000 19761000 21857000 15652000 27076000 1781100 27463000 19692000 25739000 20424000 20755000 19187000 19316000 20987000 8 8 6 8 8 8 8 8 8 8 8 7362200 12338000 207880 11766000 8158400 14753000 9506800 9061500 7976700 8830900 9792800 6856500 11511000 815260 12089000 7869100 14717000 9525300 9493500 8246300 8634200 9390500 3 3 3 3 3 3 3 3 3 3 3 9444800 16687000 163450 15021000 12365000 10535000 10654000 11110000 10710000 10930000 12065000 8795200 15565000 965860 15374000 11823000 11022000 10898000 11261000 10941000 10682000 11596000 5 5 3 5 5 5 5 5 5 5 5 4753200000 2210100000 2543100000 1485 934 1388 8906;8907;8908;8909;8910;8911;8912;8913;8914;8915 10713;10714;10715;10716;10717;10718;10719;10720;10721;10722 10721 10 ANLQQAIVTPLKPVDNTYYK Unmodified 2275.2212 0.22123275 3175 Q9ULW0;Q9ULW0-2 TPX2 Targeting protein for Xklp2 yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 64.571 64.301 3;4 5.5844E-18 21484 20211116_3429_TMUAki_TMT10x_P_F2 142.78 129.85 13108000 21030000 53367 24572000 12708000 12164000 12487000 10361000 11126000 11951000 13066000 12203000 19637000 932110 24632000 12170000 13117000 12635000 10673000 11447000 11606000 12544000 2 2 1 2 2 2 2 2 2 2 2 3278100 5248300 53367 5398100 3720000 5709100 3802100 3255100 3828700 3995400 3762500 3052700 4897800 327710 5501000 3572200 5741700 3853200 3455500 3891600 3871600 3631600 1 1 1 1 1 1 1 1 1 1 1 9829500 15782000 0 19174000 8988400 6455200 8684400 7106400 7297600 7955200 9303200 9150600 14739000 604400 19131000 8597900 7375300 8781900 7217900 7555900 7734500 8912300 1 1 0 1 1 1 1 1 1 1 1 1037900000 683540000 354400000 1486 3175 1389 8916;8917 10723;10724 10723 2 ANMGVSREDVTFEDHPLNPNPDSR Oxidation (M) 2712.2198 0.21980555 2968 Q9NVG8;Q9NVG8-2 TBC1D13 TBC1 domain family member 13 yes no 0 0 1 1 By MS/MS 4 0 1 1 38.617 38.658 4 0.0019087 9890 20211116_3431_TMUAki_TMT10x_P_F4 59.005 46.572 254920 415210 12556 491620 633520 745620 356800 460530 520200 402530 411750 237450 387730 38139 499940 601250 737510 381450 480890 518220 395520 400560 1 1 1 1 1 1 1 1 1 1 1 254920 415210 12556 491620 633520 745620 356800 460530 520200 402530 411750 237450 387730 38139 499940 601250 737510 381450 480890 518220 395520 400560 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 102210000 102210000 0 1487 2968 1390 8918 10725 10725 3052 1 ANNLHSGDNFQLNDSEIER Unmodified 2171.9832 0.98318732 2737 Q9BZF1;Q9BZF1-3;Q9BZF1-2 OSBPL8 Oxysterol-binding protein-related protein 8 yes no 0 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 41.992 41.857 3 4.2451E-58 13794 20211116_3441_TMUAki_TMT10x_S_F3 239.43 222.82 2028100 3279300 16183 4184700 4880300 4838300 2965000 3740200 4116800 2812400 3512400 1888300 3063300 203430 4214900 4631000 4864000 3143300 3830400 4116300 2785000 3407000 6 6 3 6 6 6 6 6 6 6 6 1454700 2325600 13661 2876200 4494100 4456000 2630600 2808800 3032500 2037500 2548000 1354400 2172100 158040 2918900 4261900 4405000 2778200 2915800 3050300 2021700 2472900 4 4 2 4 4 4 4 4 4 4 4 573360 953680 2521.8 1308500 386210 382380 334370 931440 1084300 774900 964460 533860 891210 45386 1296000 369050 459010 365090 914620 1066000 763250 934090 2 2 1 2 2 2 2 2 2 2 2 367170000 230860000 136310000 1488 2737 1391 8919;8920;8921;8922 10726;10727;10728;10729;10730;10731 10731 6 ANNSTYGLAAAVFTK Unmodified 1526.7729 0.77290718 500 P05091;P05091-2 ALDH2 Aldehyde dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 2 4 3 3 67.28 67.072 2;3 6.3461E-20 22550 20211116_3429_TMUAki_TMT10x_P_F2 178.15 156.06 25116000 41082000 205040 39164000 29308000 38988000 29616000 26520000 25270000 25615000 30280000 23386000 38327000 2270400 40086000 28118000 39449000 29890000 27565000 26076000 25054000 29055000 7 7 5 7 7 7 7 7 7 7 7 14781000 23408000 39488 22247000 16246000 26777000 17816000 14318000 13772000 13724000 16418000 13763000 21838000 1260700 22845000 15618000 26719000 17864000 15169000 14282000 13428000 15756000 4 4 3 4 4 4 4 4 4 4 4 10335000 17673000 165560 16917000 13062000 12212000 11800000 12201000 11498000 11892000 13862000 9623700 16488000 1009700 17241000 12501000 12731000 12026000 12397000 11794000 11627000 13299000 3 3 2 3 3 3 3 3 3 3 3 3475100000 2474500000 1000600000 1489 500 1392 8923;8924;8925;8926;8927;8928 10732;10733;10734;10735;10736;10737;10738;10739 10735 8 ANPDPNCCLGVFGLSLYTTER Unmodified 2383.0937 0.093665749 1389 P62995;P62995-3 TRA2B Transformer-2 protein homolog beta yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 4 4 5 3 79.908 79.927 2;3 2.7305E-26 27066 20211116_3435_TMUAki_TMT10x_P_F7 173.34 161.65 19211000 35352000 360840 30663000 25747000 23780000 26079000 18274000 16252000 17897000 23707000 17890000 32970000 2012400 31510000 24717000 24526000 26132000 18846000 17228000 17495000 22638000 5 5 4 5 5 5 5 5 5 5 5 2395000 4075300 11634 3709500 2430000 4519500 2732100 2210600 1890000 2478800 3020600 2230000 3801300 201750 3822200 2337800 4502300 2729400 2372100 1999700 2409900 2878800 2 2 1 2 2 2 2 2 2 2 2 16816000 31277000 349210 26954000 23317000 19260000 23347000 16063000 14362000 15418000 20686000 15660000 29168000 1810700 27688000 22380000 20024000 23402000 16474000 15228000 15085000 19759000 3 3 3 3 3 3 3 3 3 3 3 6945200000 2500600000 4444600000 1490 1389 1393 8929;8930;8931;8932;8933;8934;8935;8936 10740;10741;10742;10743;10744;10745;10746 10740 7 ANPDPNTCLGVFGLSLYTTER Unmodified 2324.1107 0.11069602 1650 Q13595;Q13595-4;Q13595-3;Q13595-2 TRA2A Transformer-2 protein homolog alpha yes no 0 0 0 0 By MS/MS By matching 7 0 2 1 1 78.323 78.372 3 0.11042 27172 20211116_3435_TMUAki_TMT10x_P_F7 18.402 8.0631 5943700 8787500 140200 9753300 6797300 9097700 6719500 3634100 3096200 4336900 5728800 5535200 8203300 635390 9871900 6524100 9185800 6707800 3991700 3401900 4206700 5444800 1 1 1 1 1 1 1 1 1 1 1 5943700 8787500 140200 9753300 6797300 9097700 6719500 3634100 3096200 4336900 5728800 5535200 8203300 635390 9871900 6524100 9185800 6707800 3991700 3401900 4206700 5444800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1767700000 677220000 1090500000 1491 1650 1394 8937;8938 10747 10747 1 ANPFGGASHAK Unmodified 1055.5148 0.514842 1344 P62266 RPS23 40S ribosomal protein S23 yes yes 0 0 0 0 By MS/MS 5 0 1 1 32.283 32.223 3 3.9393E-05 7599 20211116_3433_TMUAki_TMT10x_P_F5 100.19 81.089 558380 925850 53909 1001700 1278000 1265200 708700 630460 684340 616120 780140 520300 864200 106610 1020500 1214400 1258400 747880 672610 700660 602330 749610 1 1 1 1 1 1 1 1 1 1 1 558380 925850 53909 1001700 1278000 1265200 708700 630460 684340 616120 780140 520300 864200 106610 1020500 1214400 1258400 747880 672610 700660 602330 749610 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29658000 29658000 0 1492 1344 1395 8939 10748 10748 1 ANPQVGVAFPHIK Unmodified 1376.7565 0.75646926 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.04 2 2 2 2 4 4 50.124 50.122 3 3.0431E-19 15551 20211116_3429_TMUAki_TMT10x_P_F2 184.03 153.59 42433000 65148000 916600 76975000 82315000 84174000 55160000 55078000 53104000 50798000 60725000 39516000 60834000 4908900 77799000 78299000 84653000 57307000 57340000 54384000 49789000 58343000 13 13 11 13 13 13 13 13 13 13 13 31973000 47832000 780120 57476000 73567000 75677000 46801000 40599000 39142000 37908000 45250000 29775000 44668000 3938400 58226000 69913000 75184000 48635000 42968000 40372000 37134000 43462000 10 10 8 10 10 10 10 10 10 10 10 10461000 17316000 136480 19498000 8748000 8496900 8358200 14478000 13962000 12891000 15475000 9741100 16166000 970490 19573000 8386400 9469100 8671900 14371000 14012000 12655000 14881000 3 3 3 3 3 3 3 3 3 3 3 7892900000 4874000000 3018900000 1493 648 1396 8940;8941;8942;8943;8944;8945;8946;8947 10749;10750;10751;10752;10753;10754;10755;10756;10757;10758;10759;10760;10761;10762 10753 14 ANRFEYLLK Unmodified 1152.6291 0.62914348 260 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 51.119 51.048 3 3.341E-05 14580 20211116_3436_TMUAki_TMT10x_P_F8 145.89 83.624 7709200 13544000 140730 14099000 19784000 21087000 10952000 16272000 14021000 12041000 12989000 7179000 12640000 925800 14448000 18756000 20943000 11666000 16660000 14093000 11934000 12562000 4 4 3 4 4 4 4 4 4 4 4 6159700 10512000 114670 10844000 18360000 19904000 9906800 12626000 11030000 9274300 9972800 5736000 9809900 774790 11175000 17398000 19554000 10526000 13105000 11134000 9195900 9653100 3 3 2 3 3 3 3 3 3 3 3 1549500 3032500 26056 3254800 1424900 1183200 1045300 3645200 2991000 2766800 3015700 1443000 2830500 151010 3273700 1358300 1388500 1140300 3555600 2958500 2738400 2908400 1 1 1 1 1 1 1 1 1 1 1 801180000 545750000 255430000 1494 260 1397 8948;8949;8950;8951 10763;10764;10765;10766 10764 4 ANSHFATAFYQHLADSK Unmodified 1906.8962 0.89621022 46 CON__P41361 yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 51.962 51.728 4 4.1186E-06 16263 20211116_3429_TMUAki_TMT10x_P_F2 99.413 87.436 + 9600400 18510000 994.37 16758000 13096000 15266000 9328000 9733900 12855000 10778000 12848000 8937400 17265000 660530 17198000 12451000 15520000 9768000 10207000 12923000 10484000 12394000 4 4 1 4 4 4 4 4 4 4 4 5405900 9794600 994.37 9349100 9308800 10948000 5919800 5257400 7174700 5888000 7462900 5032600 9137700 401690 9593000 8834000 10926000 6220800 5651400 7254300 5724500 7190300 2 2 1 2 2 2 2 2 2 2 2 4194400 8715300 0 7409400 3787600 4318100 3408200 4476500 5680300 4890300 5384700 3904800 8127500 258840 7604800 3616800 4593200 3547200 4555800 5668800 4759100 5203600 2 2 0 2 2 2 2 2 2 2 2 737450000 302430000 435020000 1495 46 1398 8952;8953;8954 10767;10768;10769;10770 10767 4 ANSLLGLMGLFIHMK Oxidation (M) 1659.8841 0.88405431 58 CON__REFSEQ:XP_986630 yes yes 0 0 1 0 By MS/MS By MS/MS 4 0 2 1 1 42.849 42.999 3 0.015457 11570 20211116_3431_TMUAki_TMT10x_P_F4 46.746 27.671 + 10676000 17268000 33564 19749000 21287000 18570000 11324000 18425000 18197000 14422000 16584000 9939900 16122000 1003500 19954000 20158000 18987000 12221000 18621000 18154000 14250000 16048000 3 3 2 3 3 3 3 3 3 3 3 5151800 8009200 31899 9472700 15990000 14330000 7256800 8981000 8978900 7191500 7568800 4797100 7478900 608650 9633000 15115000 14179000 7870900 9347700 9009100 7097300 7345000 1 1 1 1 1 1 1 1 1 1 1 5523900 9258500 1664.6 10276000 5296400 4240100 4067600 9443900 9218300 7230800 9015200 5142800 8642900 394860 10321000 5043600 4808700 4349700 9273000 9145400 7153100 8702900 2 2 1 2 2 2 2 2 2 2 2 1219300000 959290000 260030000 1496 58 1399 8955;8956 10771 10771 26 1 ANSNLVLQADR Unmodified 1199.6258 0.62584901 352 O75643;O75643-2 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 0 0 0 0 By MS/MS By MS/MS 4 0 3 1 2 37.465 37.499 2 3.4846E-14 9397 20211116_3431_TMUAki_TMT10x_P_F4 180.66 133.59 757590 1233300 0 1356600 2261300 1925000 1077100 935140 1243100 852490 1165700 705360 1151300 80844 1383800 2138300 1903700 1159600 998270 1254600 836000 1126900 1 1 0 1 1 1 1 1 1 1 1 757590 1233300 0 1356600 2261300 1925000 1077100 935140 1243100 852490 1165700 705360 1151300 80844 1383800 2138300 1903700 1159600 998270 1254600 836000 1126900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 127560000 127560000 0 1497 352 1400 8957;8958;8959 10772;10773;10774 10772 3 ANTFVAELK Unmodified 991.53385 0.53384611 989 P40926 MDH2 Malate dehydrogenase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 55.214 55.511 2 3.2222E-06 16047 20211116_3445_TMUAki_TMT10x_S_F6 190.03 138.6 80422000 124510000 166330 141150000 97144000 94156000 81462000 123670000 115930000 103370000 116530000 74881000 116250000 6834100 142120000 92748000 99482000 84517000 123640000 116450000 101790000 112390000 9 9 5 9 9 9 9 9 9 9 9 16099000 23952000 45359 27159000 34337000 36093000 19592000 22915000 21439000 20056000 21978000 14989000 22362000 1493100 27614000 32547000 35922000 20702000 23878000 21749000 19706000 21184000 2 2 1 2 2 2 2 2 2 2 2 64323000 100560000 120970 113990000 62807000 58063000 61869000 100750000 94494000 83313000 94549000 59891000 93886000 5341000 114500000 60201000 63560000 63816000 99763000 94706000 82087000 91206000 7 7 4 7 7 7 7 7 7 7 7 5913600000 2964100000 2949500000 1498 989 1401 8960;8961;8962;8963;8964;8965 10775;10776;10777;10778;10779;10780;10781;10782;10783 10781 9 ANVAVVSGAPLQGQLVAR Unmodified 1748.9897 0.98971667 101 O00560;O00560-3 SDCBP Syntenin-1 yes no 0 0 0 0 By MS/MS 1 0 1 1 56.27 55.968 3 7.0451E-06 18538 20211116_3439_TMUAki_TMT10x_S_F1 85.636 71.73 1824700 3643400 28672 3477800 1859000 1990400 1587600 2887200 2748100 2756300 2789900 1699200 3399100 178480 3537400 1777400 2139600 1660500 2886300 2746400 2697300 2690000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1824700 3643400 28672 3477800 1859000 1990400 1587600 2887200 2748100 2756300 2789900 1699200 3399100 178480 3537400 1777400 2139600 1660500 2886300 2746400 2697300 2690000 1 1 1 1 1 1 1 1 1 1 1 79583000 0 79583000 1499 101 1402 8966 10784 10784 1 ANVNEILDFFHGYR Unmodified 1693.8213 0.82125436 2161 Q8IXT5 RBM12B RNA-binding protein 12B yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 77.861 77.839 3 2.765E-09 25542 20211116_3436_TMUAki_TMT10x_P_F8 124.81 113.23 4172200 7061400 96041 5941200 5510900 5470300 5016100 3982500 3512100 4296900 4519700 3885400 6584800 454160 6133100 5277400 5568400 5067300 4133600 3674500 4183600 4328800 2 2 2 2 2 2 2 2 2 2 2 1679100 2577300 44142 2412900 1462300 2730000 1800500 1498500 1321500 1684700 1806500 1563700 2404300 177310 2477900 1413300 2733900 1793900 1591300 1382600 1637700 1727600 1 1 1 1 1 1 1 1 1 1 1 2493100 4484100 51899 3528300 4048500 2740300 3215500 2484000 2190600 2612200 2713200 2321700 4180600 276850 3655200 3864100 2834500 3273500 2542300 2291900 2545900 2601200 1 1 1 1 1 1 1 1 1 1 1 1313900000 693620000 620270000 1500 2161 1403 8967;8968 10785;10786 10785 2 ANVPNKVIQCFAETGQVQK Unmodified 2130.0892 0.089172718 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 1 By MS/MS 2 0 1 1 61.322 61.084 3 2.6046E-05 18844 20211116_3440_TMUAki_TMT10x_S_F2 83.404 73.24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1501 1471 1404 8969 10787 10787 1 ANYAVDAYFR Unmodified 1188.5564 0.55637247 260;844 P28370-2;P28370;O60264 SMARCA1;SMARCA5 Probable global transcription activator SNF2L1;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 no no 0 0 0 0 By MS/MS By MS/MS 6 0.707 1 2 1 3 1 53.642 53.919 2 1.8794E-06 15385 20211116_3445_TMUAki_TMT10x_S_F6 152.97 129.02 22088000 36532000 476260 41252000 33713000 41116000 27533000 23938000 23994000 23516000 28695000 20569000 34106000 2437900 41749000 32199000 41508000 28141000 25192000 24731000 22984000 27535000 5 5 5 5 5 5 5 5 5 5 5 17288000 28567000 450770 31836000 29001000 37509000 23493000 18954000 18890000 18441000 22887000 16100000 26669000 2017400 32332000 27697000 37444000 23975000 20193000 19561000 18032000 21955000 4 4 4 4 4 4 4 4 4 4 4 4800000 7964400 25491 9415900 4711400 3607000 4039800 4983200 5103600 5074800 5807600 4469400 7437100 420470 9416400 4502200 4063800 4165800 4999800 5170500 4952500 5580600 1 1 1 1 1 1 1 1 1 1 1 1739700000 1127000000 612680000 1502 844;260 1405 8970;8971;8972;8973 10788;10789;10790;10791;10792 10792 5 ANYQADLANITCEIAIK Unmodified 1906.9459 0.94586252 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4;Q7Z4S6-6 KIF21A Kinesin-like protein KIF21A yes no 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 77.499 77.468 3 0.0064927 25111 20211116_3445_TMUAki_TMT10x_S_F6 54.368 37.603 3159500 5529900 122540 5272700 3952600 3280800 4368000 3172300 2925700 2947000 3988200 2942700 5159100 387260 5367400 3807800 3462700 4364300 3224100 3077200 2887500 3814400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3159500 5529900 122540 5272700 3952600 3280800 4368000 3172300 2925700 2947000 3988200 2942700 5159100 387260 5367400 3807800 3462700 4364300 3224100 3077200 2887500 3814400 1 1 1 1 1 1 1 1 1 1 1 434710000 0 434710000 1503 2082 1406 8974;8975 10793;10794 10794 2 ANYWWLR Unmodified 1007.4977 0.49773538 892 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 By MS/MS 3 0 1 1 62.842 62.562 2 0.061347 21230 20211116_3430_TMUAki_TMT10x_P_F3 63.148 41.017 4942000 7160200 9514.6 8138400 6261300 7744100 6300900 3300700 3381300 3645400 5483300 4601600 6684900 437070 8227500 6005200 7813600 6298800 3590500 3642300 3546100 5224500 1 1 1 1 1 1 1 1 1 1 1 4942000 7160200 9514.6 8138400 6261300 7744100 6300900 3300700 3381300 3645400 5483300 4601600 6684900 437070 8227500 6005200 7813600 6298800 3590500 3642300 3546100 5224500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 309020000 309020000 0 1504 892 1407 8976 10795 10795 1 APAAAPFVPFSGGGQR Unmodified 1528.7787 0.77866126 2736 Q9BZE9;Q9BZE9-2;Q9BZE9-4;Q9BZE9-3 ASPSCR1 Tether containing UBX domain for GLUT4 yes no 0 0 0 0 By MS/MS 2 0 1 1 56.928 56.713 3 0.01449 17071 20211116_3440_TMUAki_TMT10x_S_F2 44.691 29.719 6063600 9341200 0 10212000 5949500 4913900 5772200 7585100 7347400 6526100 7573000 5644800 8719600 382290 10277000 5692400 5392800 5913000 7545500 7413800 6417400 7298400 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6063600 9341200 0 10212000 5949500 4913900 5772200 7585100 7347400 6526100 7573000 5644800 8719600 382290 10277000 5692400 5392800 5913000 7545500 7413800 6417400 7298400 2 2 0 2 2 2 2 2 2 2 2 204260000 0 204260000 1505 2736 1408 8977 10796;10797 10796 2 APAALPALCDLLASAADPQIR Unmodified 2133.1252 0.12522387 2289 Q8TEX9;Q8TEX9-2 IPO4 Importin-4 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 80.724 80.738 3 3.0977E-14 26074 20211116_3447_TMUAki_TMT10x_S_F8 133.93 125.74 7998800 12363000 138760 11429000 7715400 12891000 9150400 6309100 7641200 9125500 10117000 7448700 11533000 664950 11747000 7442300 12895000 9159900 6831200 7927500 8796400 9683100 6 6 4 6 6 6 6 6 6 6 6 3813800 6305500 86853 5776400 3471000 7882500 4207100 3408600 3613900 4316900 4950300 3551600 5881700 391040 5961800 3351900 7799700 4210500 3718600 3749900 4178700 4734000 3 3 2 3 3 3 3 3 3 3 3 4185000 6057800 51904 5652400 4244400 5008600 4943300 2900600 4027300 4808600 5167000 3897000 5651100 273910 5785400 4090400 5094800 4949300 3112600 4177600 4617700 4949100 3 3 2 3 3 3 3 3 3 3 3 3819200000 2050400000 1768800000 1506 2289 1409 8978;8979;8980;8981 10798;10799;10800;10801;10802;10803 10802 6 APAELEVECATQLRR Unmodified 1741.8781 0.87811731 1662 Q13794 PMAIP1 Phorbol-12-myristate-13-acetate-induced protein 1 yes yes 0 0 0 1 By MS/MS 4 0 1 1 44.432 44.643 3 9.6413E-07 12635 20211116_3442_TMUAki_TMT10x_S_F4 113.65 92.097 1169700 1942000 28076 2043200 1272000 1169800 1044700 1899300 1914100 1718700 1929100 1089300 1812500 124580 2064200 1215600 1262000 1098400 1888900 1909800 1686000 1860500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1169700 1942000 28076 2043200 1272000 1169800 1044700 1899300 1914100 1718700 1929100 1089300 1812500 124580 2064200 1215600 1262000 1098400 1888900 1909800 1686000 1860500 1 1 1 1 1 1 1 1 1 1 1 58715000 0 58715000 1507 1662 1410 8982 10804 10804 1 APAGQLPR Unmodified 808.45554 0.45553621 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 0 By MS/MS 5 0 1 1 30.919 30.855 2 0.023749 7064 20211116_3433_TMUAki_TMT10x_P_F5 68.485 33.284 376080 652450 911.87 590050 634390 742040 488170 335840 395430 338620 483270 350170 608570 35647 608630 604660 737440 499950 362040 409460 330600 463470 1 1 1 1 1 1 1 1 1 1 1 376080 652450 911.87 590050 634390 742040 488170 335840 395430 338620 483270 350170 608570 35647 608630 604660 737440 499950 362040 409460 330600 463470 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15288000 15288000 0 1508 799 1411 8983 10805 10805 1 APAMQPAEIQFAQR Oxidation (M) 1572.7719 0.77186132 1724 Q14684;Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 1 0 By MS/MS By matching 5 0 2 1 1 42.391 42.493 3 0.00051392 11642 20211116_3433_TMUAki_TMT10x_P_F5 77.527 60.501 3344100 5029400 0 6272500 8482500 7862100 4649200 4190900 4588800 3791700 4678900 3113100 4697600 275680 6334900 8032200 7828800 4914500 4434400 4674100 3719600 4510700 2 2 0 2 2 2 2 2 2 2 2 3344100 5029400 0 6272500 8482500 7862100 4649200 4190900 4588800 3791700 4678900 3113100 4697600 275680 6334900 8032200 7828800 4914500 4434400 4674100 3719600 4510700 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 232580000 169460000 63127000 1509 1724 1412 8984;8985 10806;10807 10806 2317 2 APASVLPAATPR Unmodified 1149.6506 0.6506072 660 P13861;P13861-2 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit yes no 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 40.259 40.645 2 8.425E-12 9961 20211116_3447_TMUAki_TMT10x_S_F8 135.8 110.91 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1510 660 1413 8986;8987 10808;10809 10809 2 APDEETLIALLAHAK Unmodified 1590.8617 0.86172219 3283 Q9Y3E5 PTRH2 Peptidyl-tRNA hydrolase 2, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.943 1 3 3 2 6 3 78.057 78.078 3 7.2132E-10 26175 20211116_3433_TMUAki_TMT10x_P_F5 111.12 86.734 17856000 29810000 443080 27335000 20719000 25454000 21890000 19325000 18607000 19273000 22539000 16629000 27807000 1933400 28033000 19923000 25909000 22041000 19956000 19212000 18826000 21621000 5 5 5 5 5 5 5 5 5 5 5 7272200 11338000 82600 10565000 7127400 13458000 8665100 7929800 7926300 7998700 8619100 6771700 10577000 677870 10876000 6877700 13407000 8686100 8343600 8120600 7809100 8293100 2 2 2 2 2 2 2 2 2 2 2 10584000 18472000 360480 16770000 13592000 11996000 13225000 11395000 10680000 11275000 13920000 9857100 17230000 1255500 17157000 13045000 12502000 13355000 11612000 11092000 11016000 13328000 3 3 3 3 3 3 3 3 3 3 3 4670800000 2008200000 2662600000 1511 3283 1414 8988;8989;8990;8991;8992;8993;8994;8995;8996 10810;10811;10812;10813;10814;10815;10816;10817 10811 8 APDELHYTYLDTFGRPVIVAYKK Unmodified 2695.401 0.40098803 494 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 2 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 63.824 63.646 5 4.3693E-28 21195 20211116_3429_TMUAki_TMT10x_P_F2 174.82 167.55 20377000 36227000 495470 34630000 23546000 41594000 24496000 28087000 26917000 29053000 26424000 18976000 33797000 2195500 35545000 22631000 41640000 24872000 29268000 27260000 28335000 25506000 4 4 4 4 4 4 4 4 4 4 4 11310000 20299000 413300 19703000 12305000 29097000 13514000 14218000 14153000 15620000 13147000 10534000 18939000 1336800 20283000 11854000 28728000 13664000 15249000 14334000 15198000 12714000 2 2 2 2 2 2 2 2 2 2 2 9066600 15928000 82178 14927000 11241000 12497000 10982000 13869000 12764000 13433000 13277000 8442500 14859000 858730 15263000 10777000 12912000 11208000 14019000 12925000 13137000 12792000 2 2 2 2 2 2 2 2 2 2 2 3127000000 2427100000 699860000 1512 494 1415 8997;8998;8999 10818;10819;10820;10821 10819 4 APDFVFYAPR Unmodified 1181.5869 0.58694431 682;926 P15311;P26038;P35241-4;P35241;P35241-5 EZR;MSN;RDX Ezrin;Moesin;Radixin no no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 64.068 64.34 2 2.9663E-05 19402 20211116_3447_TMUAki_TMT10x_S_F8 103.8 80.276 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1513 682;926 1416 9000;9001;9002 10822;10823;10824 10824 3 APDGYIVK Unmodified 861.45962 0.45961853 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 44.004 44.136 2 0.0055546 12301 20211116_3433_TMUAki_TMT10x_P_F5 87.616 42.304 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1514 2334 1417 9003;9004 10825;10826 10825 2 APDPVAAETAAQGPTPR Unmodified 1647.8216 0.82164829 267 O60427 FADS1 Fatty acid desaturase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.816 1 1 1 1 2 39.813 39.755 3 6.2206E-12 13117 20211116_3441_TMUAki_TMT10x_S_F3 139.49 107.85 707870 1167000 18545 1453800 711650 614510 601990 909890 943700 842040 1132400 659230 1090000 75380 1450300 680680 684430 626940 908180 951790 825180 1086500 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 707870 1167000 18545 1453800 711650 614510 601990 909890 943700 842040 1132400 659230 1090000 75380 1450300 680680 684430 626940 908180 951790 825180 1086500 3 3 2 3 3 3 3 3 3 3 3 72290000 0 72290000 1515 267 1418 9005;9006;9007 10827;10828;10829;10830 10828 4 APDWVDAEECHR Unmodified 1483.615 0.61502633 146 O14964;O14964-2 HGS Hepatocyte growth factor-regulated tyrosine kinase substrate yes no 0 0 0 0 By MS/MS 3 0 1 1 39.866 39.579 3 0.027462 12863 20211116_3441_TMUAki_TMT10x_S_F3 53.448 45.849 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1516 146 1419 9008 10831 10831 1 APEYLHR Unmodified 884.45045 0.45045083 3188 Q9UN86;Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 yes no 0 0 0 0 By MS/MS 4 0 1 1 29.758 29.797 3 0.034584 6279 20211116_3431_TMUAki_TMT10x_P_F4 56.011 28.486 231250 366950 0 335260 299880 329100 280050 144500 182520 169680 278110 215300 342280 18451 344170 286930 331500 282080 156990 193350 164690 265330 1 1 0 1 1 1 1 1 1 1 1 231250 366950 0 335260 299880 329100 280050 144500 182520 169680 278110 215300 342280 18451 344170 286930 331500 282080 156990 193350 164690 265330 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18463000 18463000 0 1517 3188 1420 9009 10832 10832 1 APFDLFENK Unmodified 1079.5288 0.52876073 553 P08238;Q58FF7 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 0 0 0 0 By MS/MS By MS/MS 5.8 0.748 2 2 1 3 2 71.765 71.709 2 3.0357E-05 23541 20211116_3433_TMUAki_TMT10x_P_F5 107.15 74.933 6145100 8365500 150620 9004300 7011200 11426000 6987600 6794800 6588000 6665900 7385500 5722800 7808300 661970 9177000 6731200 11387000 7076700 7138400 6747900 6515600 7099900 1 1 1 1 1 1 1 1 1 1 1 6145100 8365500 150620 9004300 7011200 11426000 6987600 6794800 6588000 6665900 7385500 5722800 7808300 661970 9177000 6731200 11387000 7076700 7138400 6747900 6515600 7099900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 544260000 544260000 0 1518 553 1421 9010;9011;9012;9013;9014 10833;10834;10835;10836;10837 10833 5 APFDLFENKK Unmodified 1207.6237 0.62372375 553 P08238;Q58FF7 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 0 0 0 1 By MS/MS By MS/MS 7.75 0.433 1 3 2 2 60.611 61.323 3 0.0012367 18304 20211116_3447_TMUAki_TMT10x_S_F8 76.533 58.616 7035200 11004000 157050 11766000 14403000 17209000 10759000 9580700 9288100 8910500 10154000 6551700 10271000 832820 12031000 13728000 17024000 11058000 10106000 9544100 8730100 9768200 1 1 1 1 1 1 1 1 1 1 1 7035200 11004000 157050 11766000 14403000 17209000 10759000 9580700 9288100 8910500 10154000 6551700 10271000 832820 12031000 13728000 17024000 11058000 10106000 9544100 8730100 9768200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 575970000 575970000 0 1519 553 1422 9015;9016;9017;9018 10838;10839;10840;10841 10840 4 APFDLFENR Unmodified 1107.5349 0.53490874 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 67.421 67.503 2 0.0050641 20637 20211116_3444_TMUAki_TMT10x_S_F5 74.269 51.249 2168800 3261200 27216 3105200 2163900 4446300 2769800 3442600 2741900 2950900 2803500 2019600 3042500 205110 3198900 2091700 4424300 2777000 3536200 2792800 2902300 2702500 1 1 1 1 1 1 1 1 1 1 1 2168800 3261200 27216 3105200 2163900 4446300 2769800 3442600 2741900 2950900 2803500 2019600 3042500 205110 3198900 2091700 4424300 2777000 3536200 2792800 2902300 2702500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 291520000 291520000 0 1520 544 1423 9019;9020;9021 10842;10843;10844 10844 3 APFHQLR Unmodified 867.47152 0.47152062 260;844 P28370-2;P28370;O60264 SMARCA1;SMARCA5 Probable global transcription activator SNF2L1;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 no no 0 0 0 0 By MS/MS 1 0 1 1 30.497 30.563 3 0.051253 8193 20211116_3439_TMUAki_TMT10x_S_F1 45.882 27.106 177000 291220 3371.6 279870 168830 160080 205690 170880 161450 171060 200190 164830 271690 17703 284520 163010 170710 205350 173200 167560 167060 191920 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 177000 291220 3371.6 279870 168830 160080 205690 170880 161450 171060 200190 164830 271690 17703 284520 163010 170710 205350 173200 167560 167060 191920 1 1 1 1 1 1 1 1 1 1 1 4830700 0 4830700 1521 844;260 1424 9022 10845 10845 1 APGDEEAQVENLITANATEPQKAEN Unmodified 2638.2358 0.23583277 2777 Q9H0Q3 FXYD6 FXYD domain-containing ion transport regulator 6 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 70.112 70.028 3;4 1.3262E-11 22243 20211116_3428_TMUAki_TMT10x_P_F1 111.11 102.82 13100000 23202000 231810 20986000 13990000 19192000 13471000 15469000 13788000 15816000 16291000 12199000 21642000 1291100 21538000 13414000 19579000 13701000 15926000 14102000 15432000 15638000 6 6 4 6 6 6 6 6 6 6 6 6919400 11215000 47229 10214000 5747600 11706000 6847900 6868700 6301300 7346400 7766600 6442800 10461000 577760 10513000 5540100 11725000 6871700 7242100 6486400 7155200 7446800 3 3 1 3 3 3 3 3 3 3 3 6180900 11987000 184580 10771000 8242100 7486000 6623200 8600000 7486500 8469400 8524000 5756400 11181000 713330 11025000 7873400 7853900 6829600 8683800 7615200 8277100 8190700 3 3 3 3 3 3 3 3 3 3 3 1862800000 910160000 952600000 1522 2777 1425 9023;9024 10846;10847;10848;10849;10850;10851 10848 6 APGEQTVPALNLQNAFR Unmodified 1824.9482 0.94824579 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 0 0 By MS/MS By MS/MS 7.09 0.793 3 4 4 6 5 65.709 65.904 2;3 1.5949E-52 20008 20211116_3447_TMUAki_TMT10x_S_F8 260.7 231.4 48405000 80792000 751270 80913000 56559000 68727000 58758000 46137000 42553000 48074000 59047000 45073000 75388000 4305200 82353000 54315000 70258000 58984000 48107000 44585000 46872000 56450000 22 22 11 22 22 22 22 22 22 22 22 23167000 37260000 412640 38035000 24862000 42693000 28763000 21568000 20259000 22418000 26908000 21573000 34771000 1997500 38817000 23957000 42731000 28708000 23021000 21218000 21860000 25751000 11 11 6 11 11 11 11 11 11 11 11 25238000 43531000 338640 42877000 31697000 26034000 29995000 24568000 22294000 25656000 32139000 23500000 40617000 2307700 43536000 30358000 27528000 30276000 25086000 23366000 25012000 30699000 11 11 5 11 11 11 11 11 11 11 11 12148000000 6766400000 5381800000 1523 3317 1426 9025;9026;9027;9028;9029;9030;9031;9032;9033;9034;9035 10852;10853;10854;10855;10856;10857;10858;10859;10860;10861;10862;10863;10864;10865;10866;10867;10868;10869;10870;10871;10872;10873 10873 22 APGFGDNRK Unmodified 960.47773 0.47772821 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 31.024 31.009 3 0.00083013 7071 20211116_3433_TMUAki_TMT10x_P_F5 97.741 67.005 2759600 4438300 33135 3813000 3108200 3859600 1739000 1659000 2087700 1953300 2925800 2569700 4139000 251780 3934700 2947000 3879600 1846300 1806600 2138300 1895600 2796500 2 2 1 2 2 2 2 2 2 2 2 2759600 4438300 33135 3813000 3108200 3859600 1739000 1659000 2087700 1953300 2925800 2569700 4139000 251780 3934700 2947000 3879600 1846300 1806600 2138300 1895600 2796500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 88091000 88091000 0 1524 613 1427 9036;9037 10874;10875 10875 2 APGFLQPPPLRQPR Unmodified 1572.8889 0.88888041 2765 Q9H074 PAIP1 Polyadenylate-binding protein-interacting protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 48.579 48.761 3 1.24E-06 13052 20211116_3444_TMUAki_TMT10x_S_F5 96.745 71.528 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1525 2765 1428 9038;9039 10876;10877 10877 2 APGIIPR Unmodified 722.44391 0.44390889 805 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.62 1.93 2 2 8 2 2 5 11 33.698 33.877 2 0.0041944 7779 20211116_3434_TMUAki_TMT10x_P_F6 114.67 36.761 16536000 24524000 26298 25985000 19097000 19340000 15896000 12548000 12665000 13375000 17825000 15396000 22889000 1323600 26306000 18225000 19960000 16191000 13126000 13209000 13029000 17036000 14 14 5 14 14 14 14 14 14 14 14 10906000 15932000 1174.1 16867000 13812000 15090000 9933400 8165700 8282400 8618800 11294000 10154000 14870000 851180 17115000 13140000 15326000 10228000 8665300 8605000 8398900 10802000 6 6 2 6 6 6 6 6 6 6 6 5629800 8591800 25124 9117600 5285500 4250800 5962500 4382300 4382900 4756600 6531000 5242000 8019100 472400 9191500 5085700 4633600 5963700 4460200 4604200 4630200 6233700 8 8 3 8 8 8 8 8 8 8 8 2734800000 1725000000 1009700000 1526 805 1429 9040;9041;9042;9043;9044;9045;9046;9047;9048;9049;9050;9051;9052;9053;9054;9055 10878;10879;10880;10881;10882;10883;10884;10885;10886;10887;10888;10889;10890;10891;10892;10893;10894;10895 10879 18 APGLGAFR Unmodified 787.43407 0.43407249 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 42.286 42.306 2 0.013962 12982 20211116_3439_TMUAki_TMT10x_S_F1 78.445 43.552 3031700 4658100 41624 4725900 5117700 4608000 3271700 5084000 5156900 3903600 4794100 2823100 4346700 319360 4814700 4863200 4712300 3473500 5109700 5150900 3861100 4635900 3 3 3 3 3 3 3 3 3 3 3 1208700 1751300 1787 1791200 3312700 3065300 1701600 2038900 2141400 1527000 1924100 1125400 1634300 131340 1843600 3135900 3021100 1823800 2109500 2151600 1512500 1862800 1 1 1 1 1 1 1 1 1 1 1 1823000 2906800 39837 2934700 1805000 1542700 1570100 3045100 3015500 2376600 2870000 1697700 2712500 188020 2971100 1727200 1691200 1649700 3000200 2999300 2348600 2773100 2 2 2 2 2 2 2 2 2 2 2 208350000 139590000 68757000 1527 1433 1430 9056;9057;9058;9059 10896;10897 10896 2 APGLGLVLER Unmodified 1023.6077 0.60767975 3333 Q9Y606;Q9Y606-2 PUS1 tRNA pseudouridine synthase A, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 57.618 58.246 2 0.0082243 18657 20211116_3435_TMUAki_TMT10x_P_F7 70.747 15.352 8369900 13717000 130480 14311000 11214000 12959000 9196500 10073000 8940200 9722800 11157000 7794200 12802000 855360 14537000 10709000 13220000 9426000 10377000 9185000 9510200 10694000 2 2 2 2 2 2 2 2 2 2 2 4563000 7182900 16245 7626500 6773900 9255800 5638300 5484700 4887400 5414000 6318400 4248800 6704100 424410 7773300 6467600 9244000 5755300 5764600 5055700 5290500 6050800 1 1 1 1 1 1 1 1 1 1 1 3806900 6534000 114240 6684200 4439700 3703400 3558200 4588100 4052800 4308800 4838600 3545500 6097400 430950 6763800 4241800 3976500 3670600 4611900 4129300 4219700 4643300 1 1 1 1 1 1 1 1 1 1 1 683820000 357920000 325890000 1528 3333 1431 9060;9061 10898;10899 10898 2 APGPGLAQGLPQLHSLVLR Unmodified 1923.1054 0.10541513 2188 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 0 0 0 0 By MS/MS 4 0 1 1 64.865 64.965 3 8.3184E-05 20495 20211116_3431_TMUAki_TMT10x_P_F4 73.918 55.187 3759600 5622900 0 5300500 3864800 7025100 4150100 4117900 3953700 3788900 4296300 3500400 5245600 290040 5455900 3711400 6985000 4188600 4323700 4042900 3714000 4133900 1 1 0 1 1 1 1 1 1 1 1 3759600 5622900 0 5300500 3864800 7025100 4150100 4117900 3953700 3788900 4296300 3500400 5245600 290040 5455900 3711400 6985000 4188600 4323700 4042900 3714000 4133900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 447330000 447330000 0 1529 2188 1432 9062 10900 10900 1 APGPLSK Unmodified 668.38573 0.38572531 1615 Q13263;Q13263-2 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 0 By MS/MS 6.67 0.471 1 2 3 29.815 29.98 2 0.034243 8065 20211116_3435_TMUAki_TMT10x_P_F7 77.674 21.552 1477900 2287200 6474.5 2247100 2357900 2713600 1492300 1347400 1428900 1397300 1767400 1376000 2134000 125640 2302200 2238500 2705000 1557000 1440400 1468500 1362600 1694500 7 7 2 7 7 7 7 7 7 7 7 1477900 2287200 6474.5 2247100 2357900 2713600 1492300 1347400 1428900 1397300 1767400 1376000 2134000 125640 2302200 2238500 2705000 1557000 1440400 1468500 1362600 1694500 7 7 2 7 7 7 7 7 7 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26003000 26003000 0 1530 1615 1433 9063;9064;9065 10901;10902;10903;10904;10905;10906;10907 10906 7 APGQLALFSVSDK Unmodified 1331.7085 0.70851601 892 P31939 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 4 4 4 4 66.5 66.814 2;3 1.3231E-21 20964 20211116_3436_TMUAki_TMT10x_P_F8 165.7 136.35 55052000 94109000 1025600 90738000 57464000 101950000 64565000 66471000 71677000 75073000 71283000 51263000 87801000 5182600 92973000 55316000 102370000 65340000 69631000 72594000 72966000 68777000 8 8 5 8 8 8 8 8 8 8 8 40513000 68855000 816330 65757000 44967000 87520000 48726000 50972000 55598000 58551000 52134000 37725000 64237000 3843500 67627000 43238000 86996000 49441000 53896000 56138000 56871000 50399000 5 5 3 5 5 5 5 5 5 5 5 14539000 25254000 209270 24981000 12497000 14433000 15839000 15499000 16079000 16522000 19150000 13539000 23564000 1339100 25346000 12077000 15378000 15898000 15735000 16456000 16094000 18378000 3 3 2 3 3 3 3 3 3 3 3 3757700000 2433100000 1324600000 1531 892 1434 9066;9067;9068;9069;9070;9071;9072;9073 10908;10909;10910;10911;10912;10913;10914;10915;10916;10917;10918 10913 11 APGQLALFSVSDKTGLVEFAR Unmodified 2205.1794 0.17936793 892 P31939 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 77.387 77.341 3 3.542E-19 26659 20211116_3429_TMUAki_TMT10x_P_F2 147.08 133.42 11501000 23106000 80841 14155000 15927000 27854000 17116000 21983000 20756000 21630000 18974000 10708000 21527000 1048200 15277000 15303000 27398000 17412000 22636000 20893000 21140000 18359000 2 2 1 2 2 2 2 2 2 2 2 6805900 13090000 80841 7338900 7870800 19839000 10646000 13998000 12726000 13113000 10833000 6337500 12192000 654510 8080000 7621500 19308000 10718000 14501000 12789000 12843000 10509000 1 1 1 1 1 1 1 1 1 1 1 4694700 10016000 0 6816100 8055700 8014700 6470100 7984300 8029200 8516900 8141400 4370900 9334200 393690 7197500 7681600 8090200 6694100 8135400 8104100 8296100 7850300 1 1 0 1 1 1 1 1 1 1 1 3321200000 2237500000 1083600000 1532 892 1435 9074;9075 10919;10920 10919 2 APGSLVISAYAVCPDITATVTPDLKHPEGR Unmodified 3134.607 0.60703441 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 4 2 2 72.367 72.304 4;5 2.5861E-20 23268 20211116_3436_TMUAki_TMT10x_P_F8 132.53 125.96 11610000 19496000 10712 15906000 11855000 20221000 13529000 12972000 11867000 14245000 13729000 10811000 18179000 587210 16545000 11410000 20171000 13584000 13593000 12211000 13860000 13186000 5 5 3 5 5 5 5 5 5 5 5 8331200 13296000 854.31 11068000 7216900 16160000 9305200 8820500 7928600 10005000 9052600 7757200 12398000 287120 11525000 6972400 15984000 9286900 9374000 8166100 9722700 8697900 3 3 1 3 3 3 3 3 3 3 3 3279200 6200900 9858.1 4837600 4638100 4061400 4223600 4151100 3938500 4239400 4675900 3053400 5781000 300090 5019800 4437400 4187300 4297000 4218700 4045400 4136800 4487900 2 2 2 2 2 2 2 2 2 2 2 5466500000 3006400000 2460200000 1533 157 1436 9076;9077;9078;9079 10921;10922;10923;10924;10925 10922 5 APGTPHSHTKPYVR Unmodified 1546.8005 0.80045934 1534 Q07020;Q07020-2 RPL18 60S ribosomal protein L18 yes no 0 0 0 1 By MS/MS By MS/MS 1.4 0.49 9 6 8 7 25.292 25.284 3;4;5 4.3338E-33 3909 20211116_3428_TMUAki_TMT10x_P_F1 222.74 194.88 9967400 15471000 390430 12818000 9818100 15116000 9184000 8063700 8141000 7874800 10904000 9283400 14426000 1165500 13298000 9420500 15099000 9316600 8548900 8425800 7698700 10433000 16 16 8 16 16 16 16 16 16 16 16 4333300 6522800 181590 5349800 4048700 6549400 3758400 3105600 3102900 3075900 4329000 4035900 6082000 504070 5558400 3884600 6520700 3807200 3330400 3228800 3005300 4138000 10 10 5 10 10 10 10 10 10 10 10 5634100 8948000 208850 7468400 5769400 8566500 5425700 4958200 5038100 4798900 6575300 5247500 8343900 661450 7740000 5535800 8578200 5509500 5218500 5196900 4693500 6295400 6 6 3 6 6 6 6 6 6 6 6 637960000 278860000 359100000 1534 1534 1437 9080;9081;9082;9083;9084;9085;9086;9087;9088;9089;9090;9091;9092;9093;9094 10926;10927;10928;10929;10930;10931;10932;10933;10934;10935;10936;10937;10938;10939 10928 14 APIIAVTR Unmodified 839.52289 0.52288749 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 By MS/MS By MS/MS 4.46 2.53 2 2 2 1 2 2 2 6 7 40.994 41.079 2 0.00041627 10399 20211116_3436_TMUAki_TMT10x_P_F8 143.11 118.48 47990000 78720000 52899 72112000 63560000 65496000 49563000 52332000 52425000 50148000 61336000 44681000 73429000 3909500 73934000 60574000 66835000 51094000 53807000 53524000 49068000 58893000 17 17 7 17 17 17 17 17 17 17 17 23049000 36451000 15022 33851000 37009000 43736000 25867000 25341000 25276000 24014000 28832000 21460000 34003000 1926900 34865000 35195000 43532000 26803000 26653000 25866000 23508000 27704000 8 8 3 8 8 8 8 8 8 8 8 24941000 42268000 37877 38261000 26551000 21760000 23696000 26992000 27148000 26134000 32504000 23222000 39426000 1982600 39069000 25379000 23303000 24292000 27154000 27658000 25559000 31189000 9 9 4 9 9 9 9 9 9 9 9 17030000000 9815900000 7214100000 1535 670;671 1438 9095;9096;9097;9098;9099;9100;9101;9102;9103;9104;9105;9106;9107 10940;10941;10942;10943;10944;10945;10946;10947;10948;10949;10950;10951;10952;10953;10954;10955;10956;10957;10958 10947 19 APILIATDVASR Unmodified 1225.703 0.7030367 710;2368 P17844;P17844-2;Q92841;Q92841-3;Q92841-1;Q92841-2 DDX5;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 no no 0 0 0 0 By MS/MS By MS/MS 6.46 1.22 1 2 3 4 3 8 5 57.79 58.155 2;3 1.2168E-16 19092 20211116_3446_TMUAki_TMT10x_S_F7 210.64 192.38 117180000 183680000 226080 203710000 151530000 176980000 131870000 108710000 100240000 103090000 135330000 109100000 171470000 8860200 206010000 144710000 180410000 133810000 113810000 104600000 100910000 129460000 9 9 3 9 9 9 9 9 9 9 9 80436000 123590000 15013 141020000 117150000 150950000 100560000 74916000 68091000 72688000 95326000 74885000 115390000 6094500 142780000 111840000 151450000 101870000 79939000 71658000 71082000 91114000 6 6 1 6 6 6 6 6 6 6 6 36747000 60091000 211070 62691000 34380000 26037000 31308000 33794000 32147000 30399000 40001000 34214000 56081000 2765600 63223000 32872000 28960000 31944000 33867000 32946000 29829000 38344000 3 3 2 3 3 3 3 3 3 3 3 22948000000 13388000000 9559600000 1536 710;2368 1439 9108;9109;9110;9111;9112;9113;9114;9115;9116;9117;9118;9119;9120 10959;10960;10961;10962;10963;10964;10965;10966;10967;10968;10969;10970;10971;10972 10971 14 APIRPDIVNFVHTNLR Unmodified 1861.0323 0.032250187 953 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 0 1 By MS/MS By MS/MS 3.33 0.667 1 4 4 5 4 55.913 55.765 3;4 3.3518E-53 18433 20211116_3430_TMUAki_TMT10x_P_F3 274.02 253.35 19374000 28433000 145830 30981000 22622000 34111000 22181000 20168000 23122000 22220000 24103000 18039000 26541000 1693000 31472000 21682000 34243000 22551000 21270000 23516000 21617000 23221000 8 8 5 8 8 8 8 8 8 8 8 14481000 20373000 145830 22498000 18719000 28762000 17687000 14567000 16443000 16165000 17887000 13484000 19018000 1395800 22895000 17931000 28596000 17956000 15575000 16834000 15722000 17210000 5 5 5 5 5 5 5 5 5 5 5 4892600 8060700 0 8482300 3903300 5348400 4494000 5600100 6678500 6054700 6216300 4554700 7523000 297120 8576700 3751400 5647600 4595200 5694700 6682200 5894600 6011000 3 3 0 3 3 3 3 3 3 3 3 9656000000 5231300000 4424700000 1537 953 1440 9121;9122;9123;9124;9125;9126;9127;9128;9129 10973;10974;10975;10976;10977;10978;10979;10980;10981 10975 9 APIRPDIVNFVHTNLRK Unmodified 1989.1272 0.1272132 953 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 0 2 By MS/MS By MS/MS 4.86 0.915 1 4 5 4 8 6 53.49 53.605 3;4;5 3.7211E-53 14964 20211116_3444_TMUAki_TMT10x_S_F5 272.31 253.92 96500000 145110000 1384900 189050000 108240000 139660000 87822000 82806000 89646000 85019000 105470000 89856000 135570000 8833700 189020000 103310000 144050000 90206000 87127000 91681000 82943000 101250000 16 16 12 16 16 16 16 16 16 16 16 59816000 88475000 460600 114340000 83785000 111730000 60574000 50321000 54355000 51690000 62273000 55693000 82653000 5118500 114780000 79742000 112610000 62464000 54303000 55850000 50426000 59827000 9 9 6 9 9 9 9 9 9 9 9 36684000 56634000 924290 74712000 24451000 27927000 27249000 32485000 35291000 33329000 43196000 34163000 52913000 3715200 74242000 23570000 31439000 27742000 32824000 35831000 32516000 41425000 7 7 6 7 7 7 7 7 7 7 7 28343000000 15926000000 12417000000 1538 953 1441 9130;9131;9132;9133;9134;9135;9136;9137;9138;9139;9140;9141;9142;9143 10982;10983;10984;10985;10986;10987;10988;10989;10990;10991;10992;10993;10994;10995;10996;10997 10995 16 APKDQVDIAVQELLQLK Unmodified 1907.0728 0.072777598 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 79.44 79.452 3 1.1966E-07 27624 20211116_3435_TMUAki_TMT10x_P_F7 110.33 80.639 12511000 22017000 359800 16513000 18520000 28133000 19422000 18020000 18232000 18905000 19236000 11652000 20524000 1434400 17408000 17801000 27716000 19616000 18858000 18636000 18427000 18525000 5 5 4 5 5 5 5 5 5 5 5 8458500 14859000 326360 10950000 11096000 21999000 13531000 12428000 12721000 12888000 13003000 7878100 13850000 1042400 11612000 10721000 21515000 13573000 13133000 12987000 12568000 12535000 3 3 3 3 3 3 3 3 3 3 3 4052800 7158200 33434 5562600 7424200 6134200 5891000 5591600 5511500 6017100 6232700 3773700 6673400 392000 5796000 7080700 6201700 6043900 5725300 5649200 5859100 5990200 2 2 1 2 2 2 2 2 2 2 2 2926800000 1335700000 1591100000 1539 542 1442 9144;9145;9146;9147 10998;10999;11000;11001;11002 10998 5 APKEEADYEDDFLEYDQEHIR Unmodified 2611.1351 0.1350561 3214 Q9UPY3;Q9UPY3-3;Q9UPY3-2 DICER1 Endoribonuclease Dicer yes no 0 0 0 1 By MS/MS 1 0 1 1 55.88 55.88 4 0.0041789 16464 20211116_3428_TMUAki_TMT10x_P_F1 57.39 49.944 3197800 5110400 59147 5740600 4983500 6634600 4462500 4038600 4018100 3765700 4064500 2978000 4770900 345260 5825200 4768900 6645400 4540000 4229000 4108800 3689000 3919400 1 1 1 1 1 1 1 1 1 1 1 3197800 5110400 59147 5740600 4983500 6634600 4462500 4038600 4018100 3765700 4064500 2978000 4770900 345260 5825200 4768900 6645400 4540000 4229000 4108800 3689000 3919400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 457390000 457390000 0 1540 3214 1443 9148 11003 11003 1 APKPDGPGGGPGGSHMGGNYGDDR Oxidation (M) 2267.9614 0.96140602 940 P35637;P35637-2 FUS RNA-binding protein FUS yes no 0 0 1 1 By MS/MS 4.67 0.471 1 2 3 29.087 29.055 3;4 6.7214E-12 6312 20211116_3433_TMUAki_TMT10x_P_F5 118.63 113.09 211210 378570 5214 430090 1095100 599760 437110 281550 497840 244130 352890 196690 353440 33083 437660 1033700 593380 479660 301200 498660 239970 344900 3 3 2 3 3 3 3 3 3 3 3 211210 378570 5214 430090 1095100 599760 437110 281550 497840 244130 352890 196690 353440 33083 437660 1033700 593380 479660 301200 498660 239970 344900 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 116180000 116180000 0 1541 940 1444 9149;9150;9151 11004;11005;11006 11005 1200 3 APKPDGPGGGPGGSHMGGNYGDDR Unmodified 2251.9665 0.9664914 940 P35637;P35637-2 FUS RNA-binding protein FUS yes no 0 0 0 1 By MS/MS 5 0 1 1 31.348 31.284 4 3.9042E-22 7211 20211116_3433_TMUAki_TMT10x_P_F5 143.19 135.2 131250 226780 0 326750 712920 303640 256740 107410 129040 100000 200780 122200 211980 18428 325930 672070 306340 280330 118890 139410 97971 191460 1 1 0 1 1 1 1 1 1 1 1 131250 226780 0 326750 712920 303640 256740 107410 129040 100000 200780 122200 211980 18428 325930 672070 306340 280330 118890 139410 97971 191460 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 62608000 62608000 0 1542 940 1444 9152 11007 11007 1 APKPEDIDEEDDDVPDLVENFDEASKNEAN Unmodified 3358.4485 0.4484639 2509 Q96K17;Q96K17-2 BTF3L4 Transcription factor BTF3 homolog 4 yes no 0 0 0 2 By MS/MS By MS/MS 1.67 0.816 5 2 2 5 4 74.515 74.429 3;4;5 5.95E-22 25942 20211116_3439_TMUAki_TMT10x_S_F1 140.9 136.15 62493000 109370000 1260000 88238000 80688000 125280000 86490000 84547000 84886000 84075000 88545000 58194000 101980000 5864100 92063000 77574000 124430000 87377000 88004000 86557000 82131000 85303000 18 18 10 18 18 18 18 18 18 18 18 38282000 63426000 316320 49860000 39539000 87994000 51793000 47998000 47982000 51164000 50886000 35645000 59132000 2859600 52394000 38231000 86391000 51777000 50915000 49084000 49839000 48998000 9 9 6 9 9 9 9 9 9 9 9 24211000 45945000 943690 38377000 41149000 37288000 34697000 36549000 36904000 32911000 37659000 22549000 42843000 3004500 39669000 39343000 38037000 35600000 37089000 37473000 32293000 36305000 9 9 4 9 9 9 9 9 9 9 9 24054000000 13844000000 10210000000 1543 2509 1445 9153;9154;9155;9156;9157;9158;9159;9160;9161 11008;11009;11010;11011;11012;11013;11014;11015;11016;11017;11018;11019;11020;11021;11022;11023;11024;11025 11021 18 APLATGEDDDDEVPDLVENFDEASK Unmodified 2690.1719 0.17189511 740 P20290;P20290-2 BTF3 Transcription factor BTF3 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 78.329 78.307 3 2.8795E-12 27529 20211116_3439_TMUAki_TMT10x_S_F1 118.35 111.07 5941100 9845000 0 10242000 6132800 7848500 6862300 5308700 5967300 6209300 7605500 5531300 9187900 432630 10384000 5894700 8086100 6894900 5552600 6168000 6027200 7286000 3 3 0 3 3 3 3 3 3 3 3 2320900 3737800 0 4424300 1640300 4019000 2751600 1927900 2212300 2467900 3058900 2160800 3490400 165760 4459000 1599600 4072300 2716200 2081800 2304300 2388000 2924600 1 1 0 1 1 1 1 1 1 1 1 3620300 6107200 0 5817300 4492600 3829500 4110700 3380800 3755000 3741400 4546600 3370500 5697500 266870 5925400 4295100 4013800 4178600 3470800 3863700 3639200 4361400 2 2 0 2 2 2 2 2 2 2 2 1512700000 561200000 951450000 1544 740 1446 9162;9163 11026;11027;11028 11027 3 APLATGEDDDDEVPDLVENFDEASKNEAN Unmodified 3118.3375 0.33745689 740 P20290;P20290-2 BTF3 Transcription factor BTF3 yes no 0 0 0 1 By MS/MS By MS/MS 1.82 0.649 7 12 3 15 7 43.031 42.946 3;4 2.952E-25 25607 20211116_3428_TMUAki_TMT10x_P_F1 151.06 146.06 33108000 59437000 406720 51460000 35343000 44460000 38222000 26844000 27976000 32595000 39074000 30829000 55431000 2149100 52957000 33978000 45329000 38303000 28354000 29303000 31597000 37349000 31 31 20 31 31 31 31 31 31 31 31 14665000 25230000 93802 21758000 10712000 24178000 16918000 11463000 12103000 15582000 15866000 13654000 23529000 664280 22478000 10428000 24196000 16687000 12420000 12657000 15048000 15189000 18 18 13 18 18 18 18 18 18 18 18 18443000 34207000 312920 29702000 24631000 20282000 21304000 15381000 15873000 17013000 23208000 17175000 31902000 1484800 30479000 23550000 21133000 21616000 15934000 16646000 16549000 22161000 13 13 7 13 13 13 13 13 13 13 13 19491000000 10196000000 9295400000 1545 740 1447 9164;9165;9166;9167;9168;9169;9170;9171;9172;9173;9174;9175;9176;9177;9178;9179;9180;9181;9182;9183;9184;9185 11029;11030;11031;11032;11033;11034;11035;11036;11037;11038;11039;11040;11041;11042;11043;11044;11045;11046;11047;11048;11049;11050;11051;11052;11053;11054;11055;11056;11057;11058 11029 30 APLDIPVPDPVK Unmodified 1259.7125 0.71253876 1527 Q06323;Q06323-2;Q06323-3 PSME1 Proteasome activator complex subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 2 4 4 6 4 68.605 68.613 2;3 0.0001343 21072 20211116_3434_TMUAki_TMT10x_P_F6 98.04 70.942 41856000 69573000 571060 69466000 52386000 63005000 49715000 44481000 45998000 46644000 55330000 38976000 64918000 4087500 70778000 50194000 64168000 50453000 46225000 47289000 45466000 53086000 15 15 11 15 15 15 15 15 15 15 15 20168000 32476000 342790 32702000 26955000 41182000 25786000 22200000 23330000 23068000 26551000 18781000 30304000 2071400 33473000 25836000 41003000 26140000 23555000 23956000 22494000 25513000 8 8 7 8 8 8 8 8 8 8 8 21688000 37097000 228270 36764000 25431000 21823000 23930000 22281000 22668000 23576000 28779000 20195000 34614000 2016000 37305000 24358000 23164000 24312000 22670000 23333000 22972000 27573000 7 7 4 7 7 7 7 7 7 7 7 2985300000 1644800000 1340500000 1546 1527 1448 9186;9187;9188;9189;9190;9191;9192;9193;9194;9195 11059;11060;11061;11062;11063;11064;11065;11066;11067;11068;11069;11070;11071;11072;11073;11074 11066 16 APLDLDKYVEIAR Unmodified 1501.814 0.81404372 107 O00743;O00743-2;O00743-3 PPP6C Serine/threonine-protein phosphatase 6 catalytic subunit;Serine/threonine-protein phosphatase 6 catalytic subunit, N-terminally processed yes no 0 0 0 1 By MS/MS 6 0 1 1 65.937 65.882 3 0.00076224 20363 20211116_3445_TMUAki_TMT10x_S_F6 71.935 49.721 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1547 107 1449 9196 11075 11075 1 APLEVAQEH Unmodified 992.49271 0.49270958 393 O94903 PROSC Proline synthase co-transcribed bacterial homolog protein yes yes 0 0 0 0 By MS/MS 2 0 1 1 35.609 35.708 2 0.0073079 8438 20211116_3440_TMUAki_TMT10x_S_F2 67.993 50.084 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1548 393 1450 9197 11076 11076 1 APLKPYPVSPSDK Unmodified 1397.7555 0.7554662 1002 P41252 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 0 0 0 1 By MS/MS By MS/MS 5.67 3.3 1 2 2 1 43.943 43.991 3 1.3822E-09 11683 20211116_3436_TMUAki_TMT10x_P_F8 136.33 122.17 5937800 8663800 137670 10170000 16144000 12814000 8169500 8145100 9657500 7314800 9197800 5529600 8089900 756090 10308000 15287000 12786000 8749700 8492100 9743500 7178200 8887000 4 4 3 4 4 4 4 4 4 4 4 5031900 7297700 105000 8535900 15176000 12018000 7183400 6774500 8203000 6070000 7739000 4685900 6814100 649680 8672600 14357000 11911000 7736000 7131400 8284100 5957300 7479900 3 3 2 3 3 3 3 3 3 3 3 905880 1366100 32674 1634000 967170 795540 986090 1370600 1454500 1244800 1458800 843710 1275700 106410 1635500 929820 875090 1013700 1360700 1459400 1220900 1407200 1 1 1 1 1 1 1 1 1 1 1 871780000 753260000 118520000 1549 1002 1451 9198;9199;9200 11077;11078;11079;11080 11079 4 APLNVQFNSPLPGDAVK Unmodified 1765.9363 0.93628412 328 O75369;O75369-8;O75369-6;O75369-3;O75369-2;O75369-9;O75369-5;O75369-4;O75369-7 FLNB Filamin-B yes no 0 0 0 0 By MS/MS 7 0 1 1 68.222 68.564 3 0.10607 23450 20211116_3446_TMUAki_TMT10x_S_F7 27.271 14.393 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1550 328 1452 9201 11081 11081 1 APLNVTNTAGTSLPSVDLLQK Unmodified 2138.1583 0.15829814 2895 Q9NPI6;Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 1 1 1 1 75.83 75.777 3 2.8563E-05 24492 20211116_3428_TMUAki_TMT10x_P_F1 76.186 58.905 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1551 2895 1453 9202;9203 11082;11083 11082 2 APLPDLYPFGTMR Unmodified 1476.7435 0.74352131 2368 Q92841 DDX17 Probable ATP-dependent RNA helicase DDX17 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 76.612 76.612 2 1.0516E-08 24839 20211116_3428_TMUAki_TMT10x_P_F1 121.9 88.81 6938600 11093000 116440 10756000 6965800 11215000 8414900 5356400 5154000 6338600 8337000 6461400 10350000 684150 11003000 6722600 11265000 8358900 5771100 5499000 6150200 7943900 2 2 2 2 2 2 2 2 2 2 2 6938600 11093000 116440 10756000 6965800 11215000 8414900 5356400 5154000 6338600 8337000 6461400 10350000 684150 11003000 6722600 11265000 8358900 5771100 5499000 6150200 7943900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 579790000 579790000 0 1552 2368 1454 9204;9205;9206 11084;11085;11086;11087 11084 4 APLPDLYPFGTMR Oxidation (M) 1492.7384 0.73843593 2368 Q92841 DDX17 Probable ATP-dependent RNA helicase DDX17 yes yes 0 0 1 0 By MS/MS By MS/MS 7.75 0.433 1 3 3 1 70.517 70.626 2;3 0.011874 21972 20211116_3447_TMUAki_TMT10x_S_F8 55.314 44.704 8885100 14710000 156350 13757000 9821000 17237000 11332000 11320000 10443000 10870000 11632000 8274000 13723000 891310 14153000 9464000 17212000 11388000 11794000 10705000 10635000 11184000 5 5 4 5 5 5 5 5 5 5 5 7729900 12548000 117500 11771000 8322000 15898000 10014000 9870000 9022600 9352600 10037000 7198200 11705000 754520 12125000 8028900 15806000 10038000 10324000 9258300 9155600 9650500 4 4 3 4 4 4 4 4 4 4 4 1155100 2162900 38850 1985100 1498900 1338500 1318300 1450000 1420300 1517400 1595700 1075800 2017500 136790 2028100 1435100 1406000 1349800 1470600 1446700 1479200 1533900 1 1 1 1 1 1 1 1 1 1 1 3014100000 2329500000 684590000 1553 2368 1454 9207;9208;9209;9210 11088;11089;11090;11091;11092 11092 2705 5 APLPLGHIK Unmodified 944.58074 0.58073672 589 P09960;P09960-4 LTA4H Leukotriene A-4 hydrolase yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 44.039 43.934 3 0.00039713 13616 20211116_3439_TMUAki_TMT10x_S_F1 103.83 82.326 1961900 3163000 6323 3285700 2931200 2929300 2184900 1977800 2159600 1914400 2497800 1826600 2951800 163440 3337900 2791000 2984700 2254500 2057000 2210200 1872300 2399100 2 2 1 2 2 2 2 2 2 2 2 1192900 1933800 6323 2045600 2138200 2294200 1394500 1231600 1384700 1184600 1589500 1110800 1804800 118030 2082600 2031900 2298000 1453100 1304400 1416400 1158900 1527000 1 1 1 1 1 1 1 1 1 1 1 768970 1229200 0 1240100 793000 635040 790370 746150 774880 729750 908340 715830 1147000 45403 1255300 759080 686760 801360 752540 793720 713390 872110 1 1 0 1 1 1 1 1 1 1 1 218750000 159740000 59017000 1554 589 1455 9211;9212 11093;11094 11094 2 APLYDLAAHEDK Unmodified 1341.6565 0.65648044 2751 Q9GZL7 WDR12 Ribosome biogenesis protein WDR12 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 48.299 48.466 3 6.39E-05 13743 20211116_3431_TMUAki_TMT10x_P_F4 96.734 70.615 20098000 32400000 270510 38032000 26311000 25265000 20366000 25409000 25172000 24047000 28657000 18715000 30253000 1942100 38210000 25091000 26529000 21118000 25786000 25522000 23542000 27536000 6 6 4 6 6 6 6 6 6 6 6 6494000 10083000 105630 11526000 13224000 14125000 8867700 7858800 7977100 7333700 8973600 6047100 9413900 706110 11696000 12575000 14089000 9195100 8290800 8189700 7184100 8625600 2 2 1 2 2 2 2 2 2 2 2 13604000 22317000 164870 26505000 13087000 11140000 11498000 17550000 17195000 16713000 19683000 12668000 20839000 1236000 26514000 12516000 12440000 11923000 17495000 17332000 16357000 18911000 4 4 3 4 4 4 4 4 4 4 4 1572100000 1065300000 506850000 1555 2751 1456 9213;9214;9215;9216 11095;11096;11097;11098;11099;11100 11095 6 APNTPDILEIEFK Unmodified 1485.7715 0.7715102 476 P00966 ASS1 Argininosuccinate synthase yes yes 0 0 0 0 By MS/MS 5 0 1 1 76.232 76.256 2 0.01987 25406 20211116_3433_TMUAki_TMT10x_P_F5 63.473 45.741 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1556 476 1457 9217 11101 11101 1 APNTPDILEIEFKK Unmodified 1613.8665 0.86647322 476 P00966 ASS1 Argininosuccinate synthase yes yes 0 0 0 1 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 67.066 67.02 3 1.1342E-09 22798 20211116_3446_TMUAki_TMT10x_S_F7 110.55 91.817 18829000 31506000 441540 34641000 25765000 31025000 24846000 18566000 19386000 20998000 25257000 17535000 29410000 2069700 35064000 24708000 31549000 25082000 19579000 20169000 20408000 24183000 4 4 4 4 4 4 4 4 4 4 4 9101800 14213000 262510 15736000 12121000 20356000 12766000 9374300 9449500 10449000 11761000 8476600 13268000 1041500 16015000 11654000 20206000 12812000 10118000 9840300 10161000 11274000 2 2 2 2 2 2 2 2 2 2 2 9726800 17293000 179030 18905000 13644000 10668000 12081000 9192100 9936100 10549000 13496000 9057900 16142000 1028100 19049000 13054000 11343000 12269000 9461000 10328000 10247000 12909000 2 2 2 2 2 2 2 2 2 2 2 1893500000 710650000 1182900000 1557 476 1458 9218;9219;9220 11102;11103;11104;11105;11106 11106 5 APPAPGPASGGSGEVDELFDVK Unmodified 2096.0062 0.006214175 119 O14579;O14579-3;O14579-2 COPE Coatomer subunit epsilon yes no 0 0 0 0 By MS/MS By MS/MS 3.75 0.829 2 1 1 1 3 69.958 69.662 3 1.7656E-05 22859 20211116_3442_TMUAki_TMT10x_S_F4 77.847 60.102 20240000 31454000 34660 32516000 19454000 23302000 20958000 16040000 15158000 16188000 22014000 18846000 29354000 1655200 32959000 18690000 24144000 21001000 16680000 15918000 15804000 21024000 5 5 2 5 5 5 5 5 5 5 5 7449900 11215000 23049 10696000 6689700 12588000 7720200 6701900 6932100 6891300 8494700 6936500 10463000 594460 10976000 6439500 12575000 7752600 7116800 7142100 6722600 8146100 2 2 1 2 2 2 2 2 2 2 2 12790000 20239000 11612 21821000 12764000 10714000 13238000 9338500 8225700 9296500 13520000 11909000 18891000 1060800 21983000 12251000 11569000 13248000 9562900 8775500 9081200 12878000 3 3 1 3 3 3 3 3 3 3 3 1980700000 699680000 1281000000 1558 119 1459 9221;9222;9223;9224 11107;11108;11109;11110;11111;11112 11110 6 APPARPVK Unmodified 834.50757 0.50757178 1538 Q07666;Q07666-2;Q07666-3 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 1.25 0.433 3 1 2 2 26.775 26.765 3 0.0010743 6757 20211116_3429_TMUAki_TMT10x_P_F2 114.6 70.155 2981500 5371000 69872 3986100 2567200 3890600 2467500 2585700 3102700 2935600 3702300 2776500 5006500 303170 4162800 2463100 3940100 2527800 2705300 3149900 2852600 3552900 5 5 4 5 5 5 5 5 5 5 5 1115100 1978900 8850.6 1346500 1380300 2197000 1405700 1012400 1223000 1153600 1393100 1038300 1844200 101080 1431100 1324500 2159000 1418900 1093300 1258200 1120800 1338600 3 3 2 3 3 3 3 3 3 3 3 1866400 3392000 61021 2639500 1186900 1693700 1061800 1573300 1879700 1782000 2309200 1738200 3162300 202090 2731800 1138600 1781000 1108900 1612000 1891800 1731800 2214300 2 2 2 2 2 2 2 2 2 2 2 167780000 35734000 132050000 1559 1538 1460 9225;9226;9227;9228 11113;11114;11115;11116 11115 4 APPFVAR Unmodified 756.42826 0.42825883 3248 Q9Y2S7 POLDIP2 Polymerase delta-interacting protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.17 3.02 2 1 1 2 4 2 36.764 36.954 2 0.038929 10902 20211116_3439_TMUAki_TMT10x_S_F1 75.128 44.903 4299100 6536000 2225.1 6779500 6104500 6197300 4591900 3986600 4100400 3747600 5178800 4002800 6099700 370060 6890300 5814500 6299600 4721700 4157700 4231200 3669900 4962400 4 4 1 4 4 4 4 4 4 4 4 3160100 4721000 0 4975000 5081500 5191600 3504200 2813400 2853900 2692000 3706600 2942300 4406100 275180 5060600 4831800 5222100 3616800 2976900 2962100 2634200 3549200 3 3 0 3 3 3 3 3 3 3 3 1139000 1815000 2225.1 1804500 1023100 1005600 1087700 1173100 1246400 1055500 1472200 1060500 1693600 94882 1829700 982730 1077500 1104800 1180800 1269100 1035700 1413200 1 1 1 1 1 1 1 1 1 1 1 186010000 109550000 76468000 1560 3248 1461 9229;9230;9231;9232;9233;9234 11117;11118;11119 11119 3 APPNATLEHFYLTSGK Unmodified 1744.8784 0.87843489 2468 Q96G23 CERS2 Ceramide synthase 2 yes yes 0 0 0 0 By MS/MS 8 0 1 1 55.477 55.424 3 2.2692E-07 15839 20211116_3447_TMUAki_TMT10x_S_F8 104.44 77.468 4018900 7857300 68800 8363800 4639500 4075700 4044700 4596000 4828800 4374200 5940300 3742500 7333600 406000 8432500 4437800 4428200 4158100 4640000 4917600 4281200 5695900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4018900 7857300 68800 8363800 4639500 4075700 4044700 4596000 4828800 4374200 5940300 3742500 7333600 406000 8432500 4437800 4428200 4158100 4640000 4917600 4281200 5695900 1 1 1 1 1 1 1 1 1 1 1 542070000 0 542070000 1561 2468 1462 9235 11120 11120 1 APPNATLEHFYLTSGKQPK Unmodified 2098.0847 0.084739268 2468 Q96G23 CERS2 Ceramide synthase 2 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 50.698 50.491 4 3.3929E-05 15786 20211116_3429_TMUAki_TMT10x_P_F2 81.016 70.64 10977000 18422000 0 18278000 15335000 19528000 12093000 14804000 13462000 12270000 14852000 10220000 17189000 880420 18676000 14616000 19711000 12479000 15214000 13685000 12088000 14284000 3 3 0 3 3 3 3 3 3 3 3 7819100 12512000 0 13358000 11868000 16994000 9888600 10651000 9429300 8758100 9942300 7280100 11678000 679120 13622000 11328000 16945000 10120000 11093000 9631000 8631600 9575100 2 2 0 2 2 2 2 2 2 2 2 3157800 5910400 0 4920000 3466900 2534400 2204900 4152900 4032900 3512200 4909900 2939700 5511400 201300 5053500 3288300 2765400 2359100 4121500 4053900 3456600 4709300 1 1 0 1 1 1 1 1 1 1 1 1171800000 802930000 368840000 1562 2468 1463 9236;9237 11121;11122;11123 11121 3 APPPSLTDCIGTVDSR Unmodified 1684.809 0.80903469 3040 Q9NZZ3;Q9NZZ3-2 CHMP5 Charged multivesicular body protein 5 yes no 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 2 4 4 5 5 51.478 51.467 2;3 6.1052E-45 14224 20211116_3444_TMUAki_TMT10x_S_F5 204.32 188.07 36241000 58505000 876780 68221000 52291000 58614000 40761000 40499000 39202000 39677000 47549000 33750000 54628000 4028300 68767000 49901000 59898000 41900000 42066000 40246000 38785000 45610000 9 9 7 9 9 9 9 9 9 9 9 20702000 33062000 550600 40461000 38403000 46387000 27948000 25252000 24568000 24132000 27378000 19279000 30878000 2459100 40843000 36592000 46415000 28791000 26708000 25241000 23614000 26323000 6 6 4 6 6 6 6 6 6 6 6 15539000 25443000 326180 27760000 13888000 12227000 12813000 15246000 14634000 15545000 20171000 14471000 23750000 1569200 27924000 13309000 13482000 13109000 15358000 15005000 15170000 19287000 3 3 3 3 3 3 3 3 3 3 3 1635000000 1061700000 573340000 1563 3040 1464 9238;9239;9240;9241;9242;9243;9244;9245;9246;9247 11124;11125;11126;11127;11128;11129;11130;11131;11132;11133;11134;11135;11136;11137 11137 14 APPSVFAEVPQAQPVLVFK Unmodified 2023.1142 0.11424848 703 P17174 GOT1 Aspartate aminotransferase, cytoplasmic yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 2.5 3 2 1 3 3 78.581 78.559 2;3 2.5827E-12 27631 20211116_3439_TMUAki_TMT10x_S_F1 126.63 114.84 18805000 30049000 118070 29654000 23177000 27479000 24167000 18937000 17543000 19856000 22809000 17510000 28038000 1670200 30248000 22251000 27936000 24257000 19713000 18324000 19354000 21840000 6 6 5 6 6 6 6 6 6 6 6 6551000 9703400 37190 9600100 6552500 13228000 7828500 7584200 6759600 7814800 8575300 6099900 9053900 577810 9855200 6317100 13125000 7840900 8002800 6987900 7622800 8216000 2 2 2 2 2 2 2 2 2 2 2 12254000 20346000 80878 20054000 16625000 14251000 16338000 11353000 10784000 12041000 14233000 11410000 18984000 1092400 20392000 15934000 14811000 16416000 11710000 11336000 11732000 13624000 4 4 3 4 4 4 4 4 4 4 4 4905900000 2215700000 2690200000 1564 703 1465 9248;9249;9250;9251;9252;9253 11138;11139;11140;11141;11142;11143 11140 6 APPVDDAEVDELVLQTK Unmodified 1837.9309 0.93092397 3135 Q9UIG0;Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B yes no 0 0 0 0 By MS/MS By MS/MS 2 1 4 3 2 1 5 5 74.514 74.394 2;3 4.2127E-29 25475 20211116_3429_TMUAki_TMT10x_P_F2 189.3 155.41 29938000 50621000 670300 49013000 33511000 43877000 34307000 33012000 32782000 33832000 37102000 27879000 47229000 3086800 50038000 32188000 44772000 34711000 34138000 33570000 33009000 35658000 12 12 9 12 12 12 12 12 12 12 12 13477000 21316000 268100 21023000 14291000 25862000 16069000 14102000 14859000 15025000 15670000 12550000 19889000 1326900 21540000 13760000 25784000 16169000 14959000 15198000 14637000 15091000 5 5 4 5 5 5 5 5 5 5 5 16461000 29305000 402200 27990000 19220000 18015000 18239000 18911000 17923000 18807000 21433000 15329000 27340000 1760000 28498000 18428000 18988000 18542000 19179000 18372000 18372000 20567000 7 7 5 7 7 7 7 7 7 7 7 4252200000 2432700000 1819600000 1565 3135 1466 9254;9255;9256;9257;9258;9259;9260;9261;9262;9263 11144;11145;11146;11147;11148;11149;11150;11151;11152;11153;11154;11155;11156;11157 11147 14 APQAPLHSVVQQLHGK Unmodified 1708.9373 0.93728717 1803 Q15418;Q15418-2;Q15418-3;Q15418-4 RPS6KA1 Ribosomal protein S6 kinase alpha-1 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 41.817 41.705 4 1.324E-21 12272 20211116_3429_TMUAki_TMT10x_P_F2 174.39 156.91 953220 1631700 15772 1666400 1753000 1840200 1133500 1588400 1744100 1220200 1441400 887660 1522600 104930 1700100 1666200 1858300 1201000 1616700 1736900 1206900 1399800 2 2 2 2 2 2 2 2 2 2 2 512850 885790 13953 888190 1339400 1455500 791760 856600 982030 599210 783280 477620 826550 67099 914420 1271300 1434300 837640 893450 983670 595830 761760 1 1 1 1 1 1 1 1 1 1 1 440370 745870 1818.7 778170 413620 384660 341710 731820 762100 620960 658090 410040 696100 37830 785700 394900 423940 363390 723230 753220 611030 638050 1 1 1 1 1 1 1 1 1 1 1 212380000 158050000 54329000 1566 1803 1467 9264;9265 11158;11159 11158 2 APQCLGK Unmodified 772.39016 0.39015876 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 By MS/MS 5 0 1 1 33.452 33.63 2 0.021061 6982 20211116_3444_TMUAki_TMT10x_S_F5 86.866 25.305 340790 584780 2355.5 563520 369810 303550 380490 294490 286780 325680 461940 317330 545580 30856 572500 355000 325070 382490 300810 302060 316790 440190 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 340790 584780 2355.5 563520 369810 303550 380490 294490 286780 325680 461940 317330 545580 30856 572500 355000 325070 382490 300810 302060 316790 440190 1 1 1 1 1 1 1 1 1 1 1 19685000 0 19685000 1567 1474 1468 9266 11160 11160 1 APQETYADIGGLDNQIQEIK Unmodified 2202.0804 0.080441751 1336 P62191;P62191-2 PSMC1 26S protease regulatory subunit 4 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.957 1 2 2 1 2 4 70.774 70.622 3 2.7335E-25 22859 20211116_3431_TMUAki_TMT10x_P_F4 177.61 160.73 45646000 75742000 265260 71564000 52058000 73449000 53043000 50908000 48847000 51867000 58433000 42500000 70660000 3792700 73331000 49935000 74202000 53622000 52926000 50217000 50616000 56072000 13 13 5 13 13 13 13 13 13 13 13 26034000 41105000 40634 38946000 28689000 50795000 32082000 27424000 25545000 28530000 31532000 24239000 38347000 1955000 40061000 27578000 50490000 32163000 29096000 26486000 27818000 30232000 6 6 1 6 6 6 6 6 6 6 6 19612000 34637000 224630 32619000 23369000 22654000 20960000 23484000 23302000 23337000 26901000 18262000 32313000 1837700 33270000 22357000 23712000 21459000 23831000 23731000 22798000 25839000 7 7 4 7 7 7 7 7 7 7 7 5552200000 2284300000 3267900000 1568 1336 1469 9267;9268;9269;9270;9271;9272 11161;11162;11163;11164;11165;11166;11167;11168;11169;11170;11171;11172;11173 11166 13 APQLVGQFIAR Unmodified 1198.6822 0.68224168 1902 Q53EL6;Q53EL6-2 PDCD4 Programmed cell death protein 4 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 60.34 59.998 2 2.6163E-05 21190 20211116_3441_TMUAki_TMT10x_S_F3 107.1 76.53 31354000 53569000 282990 60858000 38350000 45101000 35966000 30559000 26138000 30032000 39915000 29195000 50013000 2800400 61335000 36718000 46591000 36302000 31788000 27510000 29352000 38078000 6 6 4 6 6 6 6 6 6 6 6 11698000 16976000 0 19337000 15136000 23914000 14144000 11910000 10059000 11092000 14613000 10891000 15849000 857230 19628000 14478000 23810000 14272000 12690000 10574000 10867000 13956000 2 2 0 2 2 2 2 2 2 2 2 19656000 36594000 282990 41521000 23213000 21187000 21822000 18649000 16079000 18940000 25302000 18304000 34164000 1943200 41706000 22240000 22781000 22030000 19098000 16936000 18486000 24122000 4 4 4 4 4 4 4 4 4 4 4 1180900000 483070000 697860000 1569 1902 1470 9273;9274 11174;11175;11176;11177;11178;11179 11178 6 APQPPDLGLLAYEPLGPALLLAPAPTPAER Unmodified 3047.6696 0.66955832 3072 Q9P2Y4 ZNF219 Zinc finger protein 219 yes yes 0 0 0 0 By MS/MS By matching 8 0 2 1 1 82.07 82.074 4 3.5966E-10 27260 20211116_3436_TMUAki_TMT10x_P_F8 89.396 82.836 210110 320010 0 456810 230900 341460 200650 203760 186510 268600 436630 195620 299120 15725 454630 220510 351870 204670 216060 199230 259660 413460 1 1 0 1 1 1 1 1 1 1 1 210110 320010 0 456810 230900 341460 200650 203760 186510 268600 436630 195620 299120 15725 454630 220510 351870 204670 216060 199230 259660 413460 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 185420000 94927000 90493000 1570 3072 1471 9275;9276 11180 11180 1 APQQQPPPQQPPPPQPPPQQPPPPPSYSPAR Unmodified 3327.6789 0.67889422 2675 Q9BUJ2;Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2-3;Q9BUJ2-5 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 0 0 0 0 By MS/MS By matching 7 0 2 1 1 45.052 45.582 4 4.6058E-15 13600 20211116_3435_TMUAki_TMT10x_P_F7 107.45 101.29 640880 1256800 0 1542700 1598000 1865400 1082800 1309100 1345700 1147200 991800 596680 1173800 32132 1558400 1518900 1868000 1133400 1354300 1345000 1127100 967710 3 3 0 3 3 3 3 3 3 3 3 640880 1256800 0 1542700 1598000 1865400 1082800 1309100 1345700 1147200 991800 596680 1173800 32132 1558400 1518900 1868000 1133400 1354300 1345000 1127100 967710 3 3 0 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1109100000 1002300000 106730000 1571 2675 1472 9277;9278 11181;11182;11183 11181 3 APQVLVLAPTR Unmodified 1163.7026 0.70264277 2918 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 53.41 53.319 2 6.0158E-07 15659 20211116_3440_TMUAki_TMT10x_S_F2 137.98 113.79 3678900 6535900 12889 6545300 5818700 6942700 4022200 6459200 6082900 6078200 5715000 3425300 6098700 321100 6682500 5533200 7037400 4237600 6580300 6085100 5952000 5524400 2 2 1 2 2 2 2 2 2 2 2 2052200 3487200 0 3380100 4119400 5454400 2914400 3478700 3255300 3291600 3044800 1910600 3253500 173200 3486900 3917900 5384200 3029700 3631000 3289400 3222500 2943700 1 1 0 1 1 1 1 1 1 1 1 1626700 3048600 12889 3165200 1699300 1488300 1107800 2980500 2827600 2786600 2670200 1514700 2845100 147890 3195700 1615300 1653200 1207800 2949200 2795700 2729500 2580700 1 1 1 1 1 1 1 1 1 1 1 289260000 156100000 133160000 1572 2918 1473 9279;9280 11184;11185 11185 2 APQVTESIESSELVTTCQAETLAGVK Unmodified 2747.3535 0.35350507 1501 Q02952;Q02952-3;Q02952-2 AKAP12 A-kinase anchor protein 12 yes no 0 0 0 0 By MS/MS By MS/MS 4.14 0.99 2 3 1 1 2 5 76.802 76.747 3;4 1.693E-30 26937 20211116_3430_TMUAki_TMT10x_P_F3 167.99 145.42 9845300 17740000 162440 16029000 12813000 15456000 12520000 9073200 8937300 10573000 12241000 9168200 16547000 1009200 16464000 12288000 15637000 12604000 9592000 9366100 10264000 11707000 5 5 5 5 5 5 5 5 5 5 5 4792100 8555200 85757 7784400 5277200 9395100 5884600 4555100 4549800 5255400 5915700 4462600 7980000 484020 8019900 5080500 9363000 5895900 4896500 4735500 5103900 5664300 3 3 3 3 3 3 3 3 3 3 3 5053200 9185000 76680 8244200 7536100 6060900 6635000 4518100 4387500 5317200 6325800 4705600 8567100 525180 8444200 7208000 6274400 6707700 4695500 4630600 5160100 6042300 2 2 2 2 2 2 2 2 2 2 2 6245600000 2464000000 3781600000 1573 1501 1474 9281;9282;9283;9284;9285;9286;9287 11186;11187;11188;11189;11190 11186 5 APRPTRPDK Unmodified 1036.5778 0.57777661 1308 P61313;P61313-2 RPL15 60S ribosomal protein L15 yes no 0 0 0 2 By MS/MS 1 0 1 1 23.801 23.9 4 0.0080355 5999 20211116_3439_TMUAki_TMT10x_S_F1 70.028 19.062 600120 965970 11275 707510 631520 813950 666220 608810 512230 544420 635200 558860 900390 60702 741630 607080 818020 669200 627420 532200 534360 608950 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 600120 965970 11275 707510 631520 813950 666220 608810 512230 544420 635200 558860 900390 60702 741630 607080 818020 669200 627420 532200 534360 608950 1 1 1 1 1 1 1 1 1 1 1 34496000 0 34496000 1574 1308 1475 9288 11191 11191 1 APSAPPGTGALPPAAPSGR Unmodified 1670.874 0.87401821 2783 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like yes yes 0 0 0 0 By MS/MS 8 0 1 1 40.237 40.471 3 0.083291 9665 20211116_3447_TMUAki_TMT10x_S_F8 32.305 16.415 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1575 2783 1476 9289 11192 11192 1 APSHVPFLLIGGGTAAFAAAR Unmodified 2023.1003 0.10032975 448 O95831;O95831-3;O95831-6;O95831-4 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 70.645 70.602 3 2.5245E-07 21934 20211116_3444_TMUAki_TMT10x_S_F5 86.546 70.911 17673000 30890000 448250 27185000 23918000 29951000 20749000 29243000 26074000 23314000 25864000 16459000 28810000 1970500 28036000 22881000 30326000 21377000 29590000 26285000 23014000 24957000 7 7 7 7 7 7 7 7 7 7 7 7575400 13161000 156650 11613000 8629200 17759000 9829000 13511000 11963000 10479000 11373000 7054600 12275000 788800 12048000 8313700 17617000 9973300 13861000 12056000 10359000 10990000 3 3 3 3 3 3 3 3 3 3 3 10098000 17728000 291600 15573000 15288000 12193000 10920000 15732000 14111000 12835000 14491000 9404400 16534000 1181700 15988000 14567000 12709000 11403000 15730000 14229000 12655000 13967000 4 4 4 4 4 4 4 4 4 4 4 2085700000 712980000 1372700000 1576 448 1477 9290;9291;9292;9293 11193;11194;11195;11196;11197;11198;11199;11200 11197 8 APSIIFIDELDAIGTK Unmodified 1701.9189 0.91890272 711 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 0 0 By MS/MS By MS/MS 4.42 1.61 2 2 2 2 3 1 5 7 80.52 80.511 2;3 1.4281E-29 26347 20211116_3445_TMUAki_TMT10x_S_F6 167.14 142.76 21742000 33574000 134970 35578000 21628000 26461000 23784000 16207000 16387000 18833000 24151000 20243000 31336000 1716300 36018000 20787000 27288000 23784000 17075000 17270000 18286000 23057000 9 9 4 9 9 9 9 9 9 9 9 12033000 18117000 42500 19086000 10618000 17752000 11573000 9352800 9590100 10892000 13773000 11203000 16909000 903350 19382000 10200000 17979000 11628000 9979300 9991500 10575000 13157000 5 5 1 5 5 5 5 5 5 5 5 9708600 15457000 92467 16493000 11011000 8708100 12211000 6854600 6796400 7941000 10378000 9039600 14427000 812900 16636000 10587000 9309800 12156000 7095400 7278200 7710900 9899900 4 4 3 4 4 4 4 4 4 4 4 6338400000 2961100000 3377400000 1577 711 1478 9294;9295;9296;9297;9298;9299;9300;9301;9302;9303;9304;9305 11201;11202;11203;11204;11205;11206;11207;11208;11209;11210;11211 11211 11 APSPEKAEEESER Unmodified 1457.6634 0.66341631 554 P08243;P08243-2;P08243-3 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes no 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 30.25 30.135 3 0.034626 7567 20211116_3429_TMUAki_TMT10x_P_F2 45.438 29.682 268750 433040 4906.3 496530 1007800 1046400 609240 462580 500530 380530 525470 250270 404310 37204 510280 956580 1019000 635450 497330 514840 375020 506130 2 2 2 2 2 2 2 2 2 2 2 268750 433040 4906.3 496530 1007800 1046400 609240 462580 500530 380530 525470 250270 404310 37204 510280 956580 1019000 635450 497330 514840 375020 506130 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31847000 31847000 0 1578 554 1479 9306;9307 11212 11212 1 APSYIEIFGR Unmodified 1151.5975 0.597509 1939 Q5T4S7;Q5T4S7-3;Q5T4S7-4;Q5T4S7-2;Q5T4S7-5 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 0 0 By matching By MS/MS 7 0 2 1 1 63.993 64.531 2 0.00082508 21804 20211116_3446_TMUAki_TMT10x_S_F7 99.013 64.189 11359000 19126000 211980 19888000 15450000 12274000 12883000 15795000 14550000 14824000 16482000 10578000 17849000 1196600 20121000 14762000 13053000 13254000 15852000 14798000 14518000 15840000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11359000 19126000 211980 19888000 15450000 12274000 12883000 15795000 14550000 14824000 16482000 10578000 17849000 1196600 20121000 14762000 13053000 13254000 15852000 14798000 14518000 15840000 2 2 2 2 2 2 2 2 2 2 2 960530000 654230000 306310000 1579 1939 1480 9308;9309 11213;11214 11213 2 APSYLEISSMR Unmodified 1252.6122 0.61217279 1428 P78347;P78347-2;P78347-4;P78347-3 GTF2I General transcription factor II-I yes no 0 0 0 0 By MS/MS 6 0 1 1 54.023 54.117 2 0.0044861 15130 20211116_3434_TMUAki_TMT10x_P_F6 71.524 48.096 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1580 1428 1481 9310 11215 11215 1 APTAAPPPPPPSRPSVAVPPPPPNR Unmodified 2463.3387 0.33866254 83 O00401 WASL Neural Wiskott-Aldrich syndrome protein yes yes 0 0 0 1 By MS/MS 2 0 1 1 41.134 41.19 4 1.3906E-22 10652 20211116_3440_TMUAki_TMT10x_S_F2 148.89 128 808480 1495300 14410 1725200 752170 715920 733770 1259400 1281800 1023800 1312900 752890 1396100 79670 1728700 721630 803800 762230 1246000 1281100 1009600 1265600 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 808480 1495300 14410 1725200 752170 715920 733770 1259400 1281800 1023800 1312900 752890 1396100 79670 1728700 721630 803800 762230 1246000 1281100 1009600 1265600 3 3 3 3 3 3 3 3 3 3 3 45241000 0 45241000 1581 83 1482 9311 11216;11217;11218 11218 3 APTIVGK Unmodified 684.41703 0.41702544 976 P39656;P39656-3;P39656-2 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 0 0 0 0 By MS/MS By MS/MS 7 0.894 2 1 2 3 2 37.884 38.171 2 0.014114 10610 20211116_3435_TMUAki_TMT10x_P_F7 94.262 56.616 3028000 4896700 19515 4939000 4948800 4448700 3587600 2164500 2471300 2323800 3527700 2819500 4569300 291920 5028300 4711800 4510900 3675700 2320800 2600500 2263000 3370400 5 5 4 5 5 5 5 5 5 5 5 2666700 4277300 9407.9 4365900 4588200 4122100 3132800 1819600 2076700 1987100 3068200 2483000 3991500 252550 4444000 4363100 4162600 3221200 1971300 2194100 1933800 2929100 4 4 3 4 4 4 4 4 4 4 4 361330 619410 10107 573170 360620 326550 454790 344910 394580 336740 459530 336510 577800 39366 584300 348760 348290 454530 349510 406350 329220 441280 1 1 1 1 1 1 1 1 1 1 1 85728000 62466000 23262000 1582 976 1483 9312;9313;9314;9315;9316 11219;11220;11221;11222;11223;11224 11221 6 APTNIVYK Unmodified 904.50182 0.5018177 689 P15927;P15927-2;P15927-3 RPA2 Replication protein A 32 kDa subunit yes no 0 0 0 0 By MS/MS 7 0 1 1 42.546 43.121 2 0.0026097 13064 20211116_3446_TMUAki_TMT10x_S_F7 107.47 64.439 369000 647220 2887.3 693110 391640 351930 372100 445790 498130 413420 560400 343600 604090 33601 698740 375200 381680 382360 447540 503450 405100 538670 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 369000 647220 2887.3 693110 391640 351930 372100 445790 498130 413420 560400 343600 604090 33601 698740 375200 381680 382360 447540 503450 405100 538670 1 1 1 1 1 1 1 1 1 1 1 41597000 0 41597000 1583 689 1484 9317 11225 11225 1 APVAGTCYQAEWDDYVPK Unmodified 2068.92 0.9200417 867 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 0 0 0 0 By MS/MS By MS/MS 5.3 0.781 2 3 5 5 5 67.567 67.543 2;3;4 2.1624E-23 20660 20211116_3434_TMUAki_TMT10x_P_F6 170.66 156.62 23767000 37759000 281910 38795000 28425000 31929000 28312000 20320000 18043000 20613000 26807000 22132000 35237000 2242600 39402000 27266000 32690000 28406000 21254000 19116000 20120000 25589000 10 10 5 10 10 10 10 10 10 10 10 13503000 20366000 90351 20653000 16353000 22681000 17746000 10867000 9598600 11107000 14292000 12573000 19005000 1206500 21079000 15718000 22715000 17675000 11652000 10288000 10838000 13641000 6 6 3 6 6 6 6 6 6 6 6 10265000 17393000 191560 18143000 12073000 9248000 10566000 9452700 8444200 9506100 12516000 9558600 16232000 1036100 18322000 11548000 9974500 10731000 9602100 8827900 9281900 11947000 4 4 2 4 4 4 4 4 4 4 4 8261300000 3889200000 4372000000 1584 867 1485 9318;9319;9320;9321;9322;9323;9324;9325;9326;9327 11226;11227;11228;11229;11230;11231;11232;11233;11234;11235;11236 11230 11 APVDFGYVGIDSILEQMR Oxidation (M) 2024.9877 0.98772734 3118 Q9UHD8-5;Q9UHD8;Q9UHD8-2;Q9UHD8-7;Q9UHD8-3;Q9UHD8-4;Q9UHD8-9;Q9UHD8-8 SEPT9 Septin-9 yes no 0 0 1 0 By MS/MS By MS/MS 5.75 0.829 2 1 1 3 1 79.203 79.214 3 0.00018205 25489 20211116_3444_TMUAki_TMT10x_S_F5 68.261 57.407 7158900 13231000 16897 10095000 7741800 13159000 9519400 11442000 11228000 11331000 11082000 6665700 12334000 392650 10566000 7468200 13178000 9615900 11717000 11343000 11071000 10695000 3 3 1 3 3 3 3 3 3 3 3 4862900 8871600 0 6872400 4593100 9805300 5755100 8315900 7631200 7829400 7839500 4527700 8270700 174610 7196000 4432500 9774600 5835000 8515700 7688700 7666600 7556000 2 2 0 2 2 2 2 2 2 2 2 2296000 4359700 16897 3223000 3148700 3354100 3764300 3126300 3596900 3501800 3242200 2138000 4063800 218050 3370200 3035600 3403700 3780900 3201400 3654000 3404600 3138600 1 1 1 1 1 1 1 1 1 1 1 3971600000 3155800000 815800000 1585 3118 1486 9328;9329;9330;9331 11237;11238;11239 11239 3142 3 APVDFGYVGIDSILEQMR Unmodified 2008.9928 0.99281272 3118 Q9UHD8-5;Q9UHD8;Q9UHD8-2;Q9UHD8-7;Q9UHD8-3;Q9UHD8-4;Q9UHD8-9;Q9UHD8-8 SEPT9 Septin-9 yes no 0 0 0 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 2 2 81.271 81.278 3 1.1375E-12 26934 20211116_3436_TMUAki_TMT10x_P_F8 137.44 120.75 2124700 3786700 28645 3326100 2151200 3317900 2574000 2022600 2006000 2268900 2648100 1978400 3531700 191640 3425600 2074200 3351400 2571200 2129200 2088400 2205800 2534600 3 3 2 3 3 3 3 3 3 3 3 1672400 2872500 2575.1 2558500 1507100 2721200 1825300 1480300 1467800 1704500 2019300 1557100 2679100 127160 2634700 1452500 2734300 1823800 1574400 1528500 1655500 1930900 2 2 1 2 2 2 2 2 2 2 2 452290 914270 26070 767570 644020 596650 748730 542290 538170 564380 628750 421320 852560 64480 790860 621730 617150 747480 554770 559920 550290 603730 1 1 1 1 1 1 1 1 1 1 1 722830000 652640000 70193000 1586 3118 1486 9332;9333;9334;9335 11240;11241;11242;11243 11241 4 APVEHVVADAGAFLR Unmodified 1550.8205 0.82052608 3176 Q9ULX3 NOB1 RNA-binding protein NOB1 yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 60.736 60.726 3 4.8138E-05 17910 20211116_3444_TMUAki_TMT10x_S_F5 91.076 71.086 3904700 6551800 26449 6929200 4633900 3785300 3867300 4362000 4411800 4197400 5347300 3635800 6114900 358590 6995300 4425500 4063100 3979700 4401000 4497600 4106200 5129400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3904700 6551800 26449 6929200 4633900 3785300 3867300 4362000 4411800 4197400 5347300 3635800 6114900 358590 6995300 4425500 4063100 3979700 4401000 4497600 4106200 5129400 2 2 2 2 2 2 2 2 2 2 2 420400000 0 420400000 1587 3176 1487 9336;9337 11244;11245 11244 2 APVNTAELTDLLIQQNHIGSVIK Unmodified 2473.354 0.35403784 3060 Q9P287;Q9P287-2;Q9P287-4;Q9P287-3 BCCIP BRCA2 and CDKN1A-interacting protein yes no 0 0 0 0 By matching By MS/MS 7.25 0.433 3 1 1 3 77.836 77.865 3 5.0728E-28 24921 20211116_3447_TMUAki_TMT10x_S_F8 169.84 153.72 7720600 15040000 0 14017000 10584000 9741900 10390000 6789400 6791200 7662900 10941000 7188500 14030000 662040 14308000 10142000 10122000 10438000 7078200 7213700 7448000 10426000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7720600 15040000 0 14017000 10584000 9741900 10390000 6789400 6791200 7662900 10941000 7188500 14030000 662040 14308000 10142000 10122000 10438000 7078200 7213700 7448000 10426000 1 1 0 1 1 1 1 1 1 1 1 4698700000 1247500000 3451200000 1588 3060 1488 9338;9339;9340;9341 11246;11247 11247 2 APVPGTPDSLSSGSSR Unmodified 1513.7372 0.73724996 3148 Q9UJZ1;Q9UJZ1-2 STOML2 Stomatin-like protein 2, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4.43 0.495 4 3 4 3 37.836 37.901 2;3 2.7465E-35 8923 20211116_3444_TMUAki_TMT10x_S_F5 207.54 134.9 3848000 6310400 151420 6461800 13869000 13428000 7387000 12675000 11262000 7809900 8434000 3584000 5888800 595940 6685500 13145000 13233000 7951900 12779000 11187000 7828000 8223500 6 6 4 6 6 6 6 6 6 6 6 3299400 5419500 142730 5449800 13342000 12929000 6740100 12038000 10532000 7236700 7608300 3073200 5057100 547210 5669400 12635000 12689000 7299300 12141000 10445000 7265500 7429900 2 2 2 2 2 2 2 2 2 2 2 548580 890810 8690.9 1011900 527740 498970 646890 636700 730420 573180 825680 510810 831680 48726 1016100 509240 543050 652520 638500 742810 562410 793560 4 4 2 4 4 4 4 4 4 4 4 370990000 313020000 57974000 1589 3148 1489 9342;9343;9344;9345;9346;9347;9348 11248;11249;11250;11251;11252;11253 11253 6 APVPTGEVYFADSFDR Unmodified 1769.8261 0.82606496 834 P27824;P27824-2 CANX Calnexin yes no 0 0 0 0 By MS/MS By MS/MS 3.58 1.52 2 5 7 4 4 4 15 11 68.258 68.131 2;3 8.4031E-53 22101 20211116_3433_TMUAki_TMT10x_P_F5 273.02 242.46 105650000 179670000 1135800 169270000 115380000 165750000 131850000 101010000 97174000 111540000 131130000 98379000 167610000 9052000 173360000 111090000 167620000 131800000 106280000 101580000 108500000 125450000 42 42 25 42 42 42 42 42 42 42 42 57892000 97358000 606650 90597000 60661000 107470000 69640000 54867000 52407000 60217000 70360000 53906000 90820000 4625800 93153000 58410000 107260000 69636000 58600000 54706000 58591000 67318000 22 22 12 22 22 22 22 22 22 22 22 47761000 82315000 529160 78672000 54718000 58280000 62207000 46144000 44767000 51325000 60771000 44473000 76795000 4426200 80211000 52678000 60357000 62168000 47684000 46874000 49913000 58128000 20 20 13 20 20 20 20 20 20 20 20 48010000000 25429000000 22581000000 1590 834 1490 9349;9350;9351;9352;9353;9354;9355;9356;9357;9358;9359;9360;9361;9362;9363;9364;9365;9366;9367;9368;9369;9370;9371;9372;9373;9374 11254;11255;11256;11257;11258;11259;11260;11261;11262;11263;11264;11265;11266;11267;11268;11269;11270;11271;11272;11273;11274;11275;11276;11277;11278;11279;11280;11281;11282;11283;11284;11285;11286;11287;11288;11289;11290;11291;11292;11293;11294;11295;11296 11269 43 APVSYPNTLPESFTK Unmodified 1649.8301 0.83008771 2318 Q8WX92;Q8WX92-2 NELFB Negative elongation factor B yes no 0 0 0 0 By MS/MS 7 0 1 1 61.387 62.1 2 2.2702E-09 20220 20211116_3435_TMUAki_TMT10x_P_F7 109.72 83.048 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1591 2318 1491 9375 11297 11297 1 APYFSGSSTFSPTILSSDKETIEIIDLAK Unmodified 3116.5805 0.58052812 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4;Q7Z4S6-6 KIF21A Kinesin-like protein KIF21A yes no 0 0 0 1 By MS/MS By matching 8 0 2 1 1 79.466 79.454 4 0.10165 26221 20211116_3436_TMUAki_TMT10x_P_F8 31.441 18.639 1398700 2322900 1739.5 1982700 1287500 2587100 1820800 1205900 953010 1357000 1691700 1302300 2166200 116030 2055700 1248100 2567300 1792100 1300300 1033700 1319100 1609100 1 1 1 1 1 1 1 1 1 1 1 1398700 2322900 1739.5 1982700 1287500 2587100 1820800 1205900 953010 1357000 1691700 1302300 2166200 116030 2055700 1248100 2567300 1792100 1300300 1033700 1319100 1609100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1902400000 747380000 1155000000 1592 2082 1492 9376;9377 11298 11298 1 AQAAAPASVPAQAPK Unmodified 1376.7412 0.74121312 1066 P47914 RPL29 60S ribosomal protein L29 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 35.551 35.619 3 6.5834E-07 9006 20211116_3433_TMUAki_TMT10x_P_F5 113.35 97.122 2064600 3516700 11621 3405800 4092600 3188400 2565100 2423100 2662800 2217700 2938700 1922400 3281000 197200 3479000 3885600 3244300 2684800 2496100 2714400 2174400 2826300 3 3 2 3 3 3 3 3 3 3 3 1303600 2275500 0 2060000 3368100 2504600 1771300 1489000 1565100 1377800 1773300 1213700 2122500 123790 2123400 3188500 2501200 1873900 1561800 1608600 1350200 1704100 1 1 0 1 1 1 1 1 1 1 1 761000 1241200 11621 1345800 724490 683790 793780 934140 1097700 839940 1165400 708650 1158500 73411 1355600 697120 743060 810950 934320 1105800 824210 1122200 2 2 2 2 2 2 2 2 2 2 2 366680000 262710000 103980000 1593 1066 1493 9378;9379 11299;11300;11301 11299 3 AQAALAVNISAAR Unmodified 1254.7044 0.70443369 982 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 0 By MS/MS By MS/MS 4.59 2.04 1 3 4 3 3 3 3 2 10 12 45.831 45.906 2;3 7.3558E-31 15422 20211116_3441_TMUAki_TMT10x_S_F3 256.92 209.85 39258000 61397000 1981900 69086000 55402000 66157000 44587000 47112000 46770000 45069000 52473000 36567000 57318000 5190300 69892000 52961000 67149000 45860000 48800000 47687000 44101000 50442000 25 25 13 25 25 25 25 25 25 25 25 25250000 38114000 1800800 43303000 39679000 52664000 31158000 29354000 29173000 28091000 33006000 23523000 35584000 3870400 43950000 37934000 52549000 31989000 30983000 29901000 27487000 31721000 14 14 7 14 14 14 14 14 14 14 14 14008000 23283000 181150 25783000 15723000 13493000 13429000 17758000 17597000 16978000 19467000 13044000 21735000 1319900 25942000 15027000 14600000 13871000 17817000 17786000 16614000 18721000 11 11 6 11 11 11 11 11 11 11 11 4263300000 1694200000 2569100000 1594 982 1494 9380;9381;9382;9383;9384;9385;9386;9387;9388;9389;9390;9391;9392;9393;9394;9395;9396;9397;9398;9399;9400;9401 11302;11303;11304;11305;11306;11307;11308;11309;11310;11311;11312;11313;11314;11315;11316;11317;11318;11319;11320;11321;11322;11323;11324;11325;11326;11327;11328;11329 11322 28 AQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLR 2 Oxidation (M) 3711.8672 0.86724163 818 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 2 0 By MS/MS By MS/MS 3 0 4 1 3 78.806 78.731 3;4;5 1.0162E-11 27741 20211116_3430_TMUAki_TMT10x_P_F3 97.158 88.17 1897100 6482000 0 6300600 4701400 3993100 4034000 4652700 4190300 5699000 3889800 1766000 6047700 57567 6405900 4488300 4225000 4131600 4728600 4245400 5522800 3761600 3 4 0 4 4 4 4 4 4 4 4 305400 606270 0 401010 331860 811680 431090 499990 556940 634420 560630 284360 564950 0 429730 320690 794550 435980 528110 561220 614070 540710 1 1 0 1 1 1 1 1 1 1 1 1591700 5875700 0 5899600 4369500 3181400 3602900 4152700 3633300 5064500 3329100 1481700 5482800 57567 5976200 4167600 3430500 3695600 4200500 3684200 4908700 3220900 2 3 0 3 3 3 3 3 3 3 3 14196000000 1186000000 13010000000 1595 818 1495 9402;9403;9404;9405 11330;11331;11332;11333 11330 972;973 4 AQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLR Oxidation (M) 3695.8723 0.87232701 818 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 1 0 By MS/MS By MS/MS 4 0.5 1 6 1 4 4 80.386 80.376 3;4;5 8.5612E-12 26816 20211116_3431_TMUAki_TMT10x_P_F4 97.248 87.621 9385100 16204000 176310 19333000 12196000 12182000 12865000 7363800 7173800 8866000 12278000 8739100 15131000 644300 19395000 11715000 12743000 12838000 7775100 7728300 8597100 11686000 10 10 4 10 10 10 10 10 10 10 10 5015000 8288800 11348 8749900 5238200 7445200 6298700 3058500 3153700 4086400 5958000 4669000 7736100 362960 8874200 5045700 7566600 6236200 3361800 3445500 3948600 5660700 5 5 3 5 5 5 5 5 5 5 5 4370200 7914900 164960 10583000 6957300 4736500 6566400 4305200 4020100 4779600 6320100 4070100 7395400 281340 10521000 6669600 5176200 6602200 4413200 4282800 4648400 6025500 5 5 1 5 5 5 5 5 5 5 5 13199000000 6796000000 6402500000 1596 818 1495 9406;9407;9408;9409;9410;9411;9412;9413 11334;11335;11336;11337;11338;11339;11340;11341;11342;11343 11337 972;973 10 AQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLR Unmodified 3679.8774 0.87741239 818 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.4 0.49 3 2 2 3 82.047 82.052 3;4 2.6426E-54 26653 20211116_3444_TMUAki_TMT10x_S_F5 194.31 185.54 1953300 3241600 7801.5 2857600 1860900 3046300 2201500 1400400 1573200 1652000 2317300 1818500 3023300 134550 2945200 1791200 3054700 2195900 1514400 1654400 1603100 2212400 3 3 1 3 3 3 3 3 3 3 3 1852400 3072600 7801.5 2671900 1751400 2982100 2083800 1365700 1533800 1609600 2205000 1724500 2865600 129510 2758800 1686200 2982500 2079300 1477400 1608200 1561900 2106300 2 2 1 2 2 2 2 2 2 2 2 100910 169020 0 185690 109520 64151 117730 34704 39473 42413 112320 93925 157780 5037.8 186440 105000 72188 116560 37001 46167 41105 106090 1 1 0 1 1 1 1 1 1 1 1 1674900000 764130000 910810000 1597 818 1495 9414;9415;9416;9417;9418 11344;11345;11346 11346 3 AQAEALALQASLRK Unmodified 1468.8362 0.83617614 3345 Q9Y6A5 TACC3 Transforming acidic coiled-coil-containing protein 3 yes yes 0 0 0 1 By MS/MS 1 0 1 1 53.606 53.316 3 2.6268E-06 17449 20211116_3439_TMUAki_TMT10x_S_F1 111.22 82.245 4308900 7112900 43223 7676600 4092400 3625000 3691800 5590600 5575600 5043800 5940100 4012300 6639200 394490 7731000 3916500 3987000 3824000 5568500 5602700 4948600 5718900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4308900 7112900 43223 7676600 4092400 3625000 3691800 5590600 5575600 5043800 5940100 4012300 6639200 394490 7731000 3916500 3987000 3824000 5568500 5602700 4948600 5718900 2 2 2 2 2 2 2 2 2 2 2 236170000 0 236170000 1598 3345 1496 9419 11347;11348 11347 2 AQAELVGTADEATR Unmodified 1430.7001 0.70013617 863 P30049 ATP5D ATP synthase subunit delta, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 1.86 0.639 2 4 1 2 5 39.156 39.032 2;3 2.3792E-43 9604 20211116_3440_TMUAki_TMT10x_S_F2 270.24 191.59 3884000 6151200 8650 7086900 5348500 4946300 4036500 4268700 4778100 3845400 5396300 3615900 5743300 277500 7131700 5091200 5155800 4185900 4361600 4850400 3773000 5186500 6 6 1 6 6 6 6 6 6 6 6 2078800 3069500 0 3685000 3829700 3465300 2315300 1812400 2211000 1701800 2592000 1935200 2866500 142670 3712600 3630500 3506600 2424500 1922900 2267400 1666600 2488600 2 2 0 2 2 2 2 2 2 2 2 1805200 3081700 8650 3401900 1518800 1481000 1721200 2456300 2567100 2143600 2804300 1680700 2876800 134830 3419100 1460700 1649100 1761500 2438800 2583000 2106400 2697900 4 4 1 4 4 4 4 4 4 4 4 350720000 183570000 167150000 1599 863 1497 9420;9421;9422;9423;9424;9425;9426 11349;11350;11351;11352;11353;11354;11355 11353 7 AQAELVGTADEATRAEIQIR Unmodified 2141.1077 0.10765955 863 P30049 ATP5D ATP synthase subunit delta, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 3.15 0.863 3 6 3 1 5 8 72.728 72.619 3 1.1667E-58 16511 20211116_3442_TMUAki_TMT10x_S_F4 243.23 194.67 59889000 94988000 362900 105040000 73644000 66449000 63803000 49028000 40022000 42268000 70715000 55759000 88671000 4229300 105870000 70330000 69683000 64496000 50525000 42845000 41560000 67266000 16 16 7 16 16 16 16 16 16 16 16 28213000 42431000 134440 47074000 41454000 42773000 37519000 23297000 18022000 18784000 33635000 26264000 39610000 1836700 47631000 39604000 43402000 37659000 24535000 19742000 18531000 31963000 7 7 4 7 7 7 7 7 7 7 7 31676000 52557000 228460 57969000 32190000 23676000 26284000 25731000 22000000 23484000 37080000 29495000 49061000 2392600 58243000 30726000 26281000 26837000 25990000 23104000 23029000 35303000 9 9 3 9 9 9 9 9 9 9 9 6268900000 3001900000 3266900000 1600 863 1498 9427;9428;9429;9430;9431;9432;9433;9434;9435;9436;9437;9438;9439 11356;11357;11358;11359;11360;11361;11362;11363;11364;11365;11366;11367;11368;11369;11370;11371;11372 11370 17 AQAEQQHNPAANPTMIR Oxidation (M) 1891.8959 0.89589264 12 A5YKK6;A5YKK6-3;A5YKK6-2 CNOT1 CCR4-NOT transcription complex subunit 1 yes no 0 0 1 0 By MS/MS 4 0 1 1 28.637 28.681 3 0.018695 5857 20211116_3431_TMUAki_TMT10x_P_F4 42.679 30.886 49106 97861 1530.7 92605 123300 116230 58804 67391 82870 53105 73397 45734 91295 6536.8 95197 116690 115850 63764 70555 82917 52453 71096 1 1 1 1 1 1 1 1 1 1 1 49106 97861 1530.7 92605 123300 116230 58804 67391 82870 53105 73397 45734 91295 6536.8 95197 116690 115850 63764 70555 82917 52453 71096 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8943500 8943500 0 1601 12 1499 9440 11373 11373 9 1 AQAGEGVRPSPMQLELR Oxidation (M) 1853.9418 0.9417802 109 O00764;O00764-2;O00764-3 PDXK Pyridoxal kinase yes no 0 0 1 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 36.822 36.877 3 2.6785E-05 9151 20211116_3431_TMUAki_TMT10x_P_F4 87.668 63.768 2215700 3558200 49408 4334800 5785600 5910600 3458900 3905300 4345100 3267400 3750100 2063300 3323100 273590 4391000 5491600 5879100 3657600 4052800 4360500 3217400 3636000 5 5 4 5 5 5 5 5 5 5 5 2002800 3215300 48698 3925400 5597800 5757600 3320500 3465700 3869600 2943200 3352600 1865100 3002900 255620 3981800 5312700 5700900 3504200 3623700 3894300 2896000 3250100 4 4 3 4 4 4 4 4 4 4 4 212920 342900 710.74 409470 187810 153030 138360 439660 475510 324250 397450 198250 320210 17963 409190 178880 178150 153370 429090 466230 321430 385820 1 1 1 1 1 1 1 1 1 1 1 478220000 356590000 121630000 1602 109 1500 9441;9442;9443 11374;11375;11376;11377;11378 11374 87 5 AQALEDLAGFK Unmodified 1161.603 0.60298831 1039 P46013;P46013-2 MKI67 Antigen KI-67 yes no 0 0 0 0 By MS/MS By MS/MS 5.25 0.829 1 1 2 2 2 69.331 69.407 2 6.904E-16 21426 20211116_3434_TMUAki_TMT10x_P_F6 183.03 135.21 2426400 3949300 19563 3868100 3374500 4797500 3295300 2544300 2558600 2410600 3289000 2259300 3684800 232670 3965700 3234800 4779400 3323900 2696600 2661100 2359800 3150100 1 1 1 1 1 1 1 1 1 1 1 2426400 3949300 19563 3868100 3374500 4797500 3295300 2544300 2558600 2410600 3289000 2259300 3684800 232670 3965700 3234800 4779400 3323900 2696600 2661100 2359800 3150100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 247240000 247240000 0 1603 1039 1501 9444;9445;9446;9447 11379;11380;11381;11382 11380 4 AQALEELTGFR Unmodified 1233.6354 0.63535107 1039 P46013;P46013-2 MKI67 Antigen KI-67 yes no 0 0 0 0 By MS/MS 4 0 1 1 66.4 66.488 2 3.6457E-05 21138 20211116_3431_TMUAki_TMT10x_P_F4 103.08 62.054 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1604 1039 1502 9448 11383 11383 1 AQALSEEEFQR Acetyl (Protein N-term) 1348.6259 0.62590859 1897 Q4V328;Q4V328-4;Q4V328-2 GRIPAP1 GRIP1-associated protein 1 yes no 1 0 0 0 By MS/MS 1 0 1 1 52.178 51.897 2 2.3782E-07 16857 20211116_3439_TMUAki_TMT10x_S_F1 84.083 78.14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1605 1897 1503 9449 11384 11384 1 AQALVQYLEEPLTQVAAS Unmodified 1930.0048 0.004757612 3243 Q9Y2Q5 LAMTOR2 Ragulator complex protein LAMTOR2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.72 1.56 1 4 4 2 4 3 9 9 82.182 82.176 2;3 1.4424E-11 26616 20211116_3434_TMUAki_TMT10x_P_F6 124.12 106.3 9786200 16652000 181350 15711000 12320000 15206000 11642000 11023000 9767400 10469000 13531000 9112800 15535000 788650 16087000 11803000 15428000 11786000 11402000 10152000 10247000 12937000 18 18 9 18 18 18 18 18 18 18 18 4957100 7786100 78955 7546000 5767200 10071000 5893300 5144100 4799300 5426500 6848900 4615900 7264300 341020 7752900 5535700 9993600 5937300 5487300 5003000 5288100 6543400 8 8 4 8 8 8 8 8 8 8 8 4829100 8866100 102400 8165000 6552400 5134600 5748400 5879100 4968100 5042500 6682400 4497000 8270400 447630 8333900 6267600 5434500 5848800 5914800 5149200 4959300 6393200 10 10 5 10 10 10 10 10 10 10 10 4078100000 1725600000 2352600000 1606 3243 1504 9450;9451;9452;9453;9454;9455;9456;9457;9458;9459;9460;9461;9462;9463;9464;9465;9466;9467 11385;11386;11387;11388;11389;11390;11391;11392;11393;11394;11395;11396;11397;11398;11399;11400;11401;11402;11403 11390 19 AQASLLACEGLAGVSLVPTAASK Acetyl (Protein N-term) 2255.1831 0.18313268 2240 Q8NDX6 ZNF740 Zinc finger protein 740 yes yes 1 0 0 0 By MS/MS 7 0 1 1 80.705 80.739 3 4.7059E-05 28578 20211116_3446_TMUAki_TMT10x_S_F7 45.011 34.224 1215000 1932100 16327 2157000 1341900 1500400 1645000 953820 1177800 1407100 1612600 1131400 1803700 117730 2174800 1295300 1556700 1638300 1010900 1234100 1355500 1542100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1215000 1932100 16327 2157000 1341900 1500400 1645000 953820 1177800 1407100 1612600 1131400 1803700 117730 2174800 1295300 1556700 1638300 1010900 1234100 1355500 1542100 1 1 1 1 1 1 1 1 1 1 1 546140000 0 546140000 1607 2240 1505 9468 11404 11404 1 AQAVLEEDHYGMEDVK Oxidation (M) 1848.82 0.81999331 955 P36776;P36776-3;P36776-2 LONP1 Lon protease homolog, mitochondrial yes no 0 0 1 0 By MS/MS 3 0 1 1 42.441 42.495 3 0.00036656 12959 20211116_3430_TMUAki_TMT10x_P_F3 72.446 58.192 238780 381770 12395 505110 792960 678320 372820 334920 369800 283790 377240 222420 356690 39110 509170 750520 672620 400040 356320 376600 279270 363680 1 1 1 1 1 1 1 1 1 1 1 238780 381770 12395 505110 792960 678320 372820 334920 369800 283790 377240 222420 356690 39110 509170 750520 672620 400040 356320 376600 279270 363680 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21153000 21153000 0 1608 955 1506 9469 11405 11405 1212 1 AQAVLQQYQHLPSFR Unmodified 1784.9322 0.93220179 3134 Q9UID3;Q9UID3-2 VPS51 Vacuolar protein sorting-associated protein 51 homolog yes no 0 0 0 0 By matching By MS/MS 3 0 2 1 1 57.163 56.846 3 2.5051E-19 19896 20211116_3441_TMUAki_TMT10x_S_F3 161.49 131.8 1052100 1777400 1859 1901500 1125500 994020 1071600 1403400 1256400 1329400 1373600 979630 1659000 89988 1917500 1077900 1077800 1095500 1404000 1274300 1301400 1321400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1052100 1777400 1859 1901500 1125500 994020 1071600 1403400 1256400 1329400 1373600 979630 1659000 89988 1917500 1077900 1077800 1095500 1404000 1274300 1301400 1321400 1 1 1 1 1 1 1 1 1 1 1 638810000 449360000 189450000 1609 3134 1507 9470;9471 11406 11406 1 AQCPIVER Unmodified 971.48585 0.48585006 1055 P46782 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 30.993 30.883 2 0.00073256 6717 20211116_3431_TMUAki_TMT10x_P_F4 135 96.449 1706000 2849400 0 2571600 2037800 1918500 1898300 1080900 1265100 1186700 1914200 1588400 2657700 141710 2633300 1950200 1975900 1913200 1144400 1337700 1154700 1826400 3 3 0 3 3 3 3 3 3 3 3 738280 1271200 0 1116100 1093700 1202300 770730 465580 538810 520100 818900 687400 1185600 64756 1150800 1040500 1202900 791500 512180 568230 505710 781290 1 1 0 1 1 1 1 1 1 1 1 967690 1578200 0 1455500 944090 716210 1127600 615300 726260 666650 1095300 900990 1472200 76952 1482500 909650 772970 1121700 632230 769500 648970 1045200 2 2 0 2 2 2 2 2 2 2 2 157670000 47292000 110380000 1610 1055 1508 9472;9473 11407;11408;11409 11407 3 AQCYMDTEQYEEAVRDYEK Oxidation (M) 2442.9944 0.99440521 2590 Q99615;Q99615-2 DNAJC7 DnaJ homolog subfamily C member 7 yes no 0 0 1 1 By MS/MS By MS/MS 3 0.707 2 4 2 4 4 53.881 53.717 3;4 6.8812E-18 18609 20211116_3441_TMUAki_TMT10x_S_F3 155.24 145.71 20006000 36646000 391970 34598000 24396000 35586000 20921000 35798000 37205000 34055000 31362000 18630000 34187000 2063300 35455000 23327000 36197000 21907000 36334000 36930000 33331000 30435000 9 9 8 9 9 9 9 9 9 9 9 8125900 14501000 162430 13747000 11891000 22541000 11234000 13763000 14954000 13166000 11995000 7567100 13528000 855670 14209000 11393000 22224000 11544000 14419000 14945000 12883000 11662000 4 4 3 4 4 4 4 4 4 4 4 11880000 22145000 229540 20851000 12505000 13045000 9687100 22034000 22252000 20889000 19368000 11063000 20659000 1207600 21246000 11933000 13973000 10362000 21915000 21985000 20448000 18773000 5 5 5 5 5 5 5 5 5 5 5 2990800000 2015600000 975140000 1611 2590 1509 9474;9475;9476;9477;9478;9479;9480;9481 11410;11411;11412;11413;11414;11415;11416;11417;11418;11419 11415 2824 10 AQCYMDTEQYEEAVRDYEK Unmodified 2426.9995 0.99949059 2590 Q99615;Q99615-2 DNAJC7 DnaJ homolog subfamily C member 7 yes no 0 0 0 1 By MS/MS 3 0 1 1 60.216 59.959 3 1.287E-10 20142 20211116_3430_TMUAki_TMT10x_P_F3 116.51 109.56 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1612 2590 1509 9482 11420 11420 1 AQDAPLSLLQTQGGRK Unmodified 1681.9111 0.911132 1080 P48681 NES Nestin yes yes 0 0 0 1 By MS/MS 4.5 3.5 1 1 2 49.788 49.688 3 1.1027E-29 13531 20211116_3447_TMUAki_TMT10x_S_F8 197.14 165.26 5641100 9976500 83153 12154000 3538600 3953100 3296300 7644500 7753200 6528100 9111500 5253000 9317300 515740 12123000 3391900 4616000 3494200 7552700 7740700 6421700 8747400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5641100 9976500 83153 12154000 3538600 3953100 3296300 7644500 7753200 6528100 9111500 5253000 9317300 515740 12123000 3391900 4616000 3494200 7552700 7740700 6421700 8747400 2 2 2 2 2 2 2 2 2 2 2 407490000 0 407490000 1613 1080 1510 9483;9484 11421;11422;11423 11423 3 AQDEGLLSDVVPFKVPGK Unmodified 1898.0149 0.014928368 1237 P55084;P55084-2 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 0 0 0 1 By MS/MS 7 0 1 1 74.366 74.581 3 0.0042071 25519 20211116_3435_TMUAki_TMT10x_P_F7 61.167 51.509 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1614 1237 1511 9485 11424 11424 1 AQDEIPALSVSRPQTGLSFLGPEPEDLEDLYSR Unmodified 3628.7897 0.78968604 1032 P43686;P43686-2 PSMC4 26S protease regulatory subunit 6B yes no 0 0 0 1 By MS/MS By MS/MS 3.2 0.98 1 3 1 2 3 78.641 78.592 3;4 5.2087E-21 28657 20211116_3441_TMUAki_TMT10x_S_F3 131.27 123.9 5683600 11284000 57604 9537300 7562300 8031800 7877600 4949300 4931200 5856500 7297600 5292000 10522000 499500 9830400 7259200 8205800 7882900 5214800 5229500 5682400 6966400 4 4 2 4 4 4 4 4 4 4 4 1742900 2892300 0 2684800 1453200 2775500 1775900 1364200 1548400 1566100 1809500 1622600 2698000 115260 2755000 1399900 2790200 1777400 1464300 1594400 1521200 1737500 1 1 0 1 1 1 1 1 1 1 1 3940700 8391500 57604 6852500 6109100 5256200 6101700 3585100 3382800 4290400 5488100 3669400 7824400 384250 7075500 5859300 5415600 6105400 3750500 3635100 4161200 5229000 3 3 2 3 3 3 3 3 3 3 3 3491300000 1177600000 2313600000 1615 1032 1512 9486;9487;9488;9489;9490 11425;11426;11427;11428 11426 4 AQDGSHPLSLQDLIEK Unmodified 1749.8897 0.88972785 401 O94979;O94979-9;O94979-6;O94979-3;O94979-10;O94979-4;O94979-2;O94979-8;O94979-7 SEC31A Protein transport protein Sec31A yes no 0 0 0 0 By MS/MS 5 0 1 1 63.329 63.477 3 0.0047195 20146 20211116_3433_TMUAki_TMT10x_P_F5 61.096 41.356 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1616 401 1513 9491 11429 11429 1 AQDIEAGDGTTSVVIIAGSLLDSCTK Unmodified 2620.2902 0.29017653 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 By MS/MS By MS/MS 5.19 1.07 1 3 6 4 2 8 8 82.666 82.668 3;4 3.3964E-49 26755 20211116_3431_TMUAki_TMT10x_P_F4 199.83 187.39 45590000 77926000 403610 66949000 54143000 66220000 59573000 43099000 40738000 47253000 55752000 42449000 72673000 3987700 69063000 52057000 66986000 59561000 45112000 42801000 45979000 53317000 16 16 10 16 16 16 16 16 16 16 16 22803000 37246000 201180 32397000 21954000 41568000 26855000 22504000 20628000 24614000 28192000 21233000 34736000 2029700 33530000 21183000 41352000 26791000 23906000 21526000 23953000 26962000 9 9 6 9 9 9 9 9 9 9 9 22787000 40681000 202430 34552000 32189000 24653000 32719000 20595000 20110000 22639000 27560000 21216000 37936000 1958100 35533000 30874000 25634000 32770000 21206000 21275000 22026000 26355000 7 7 4 7 7 7 7 7 7 7 7 17894000000 8941100000 8953200000 1617 1147 1514 9492;9493;9494;9495;9496;9497;9498;9499;9500;9501;9502;9503;9504;9505;9506;9507 11430;11431;11432;11433;11434;11435;11436;11437;11438;11439;11440;11441;11442;11443;11444;11445;11446 11430 17 AQDPSEVLTMLTNETGFEISSSDATVK Oxidation (M) 2885.3488 0.34881362 1575 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 1 0 By MS/MS By MS/MS 3.11 1.79 2 2 2 1 2 4 5 79.668 79.642 3;4 1.5962E-24 29088 20211116_3441_TMUAki_TMT10x_S_F3 142.25 127.16 14870000 23843000 344640 23515000 18985000 23411000 18241000 17325000 16391000 17009000 18701000 13847000 22247000 1517300 24011000 18200000 23719000 18484000 17912000 16838000 16625000 17969000 11 11 8 11 11 11 11 11 11 11 11 9093500 14301000 267340 14498000 8177500 16482000 10353000 10062000 9763100 9836600 11318000 8468400 13345000 926760 14806000 7907700 16524000 10370000 10548000 10013000 9616200 10870000 6 6 5 6 6 6 6 6 6 6 6 5776200 9542400 77299 9017500 10807000 6928900 7887600 7262200 6627800 7172600 7383900 5378600 8902100 590500 9205100 10292000 7195000 8114400 7364200 6824600 7008800 7099600 5 5 3 5 5 5 5 5 5 5 5 8286800000 3963800000 4323100000 1618 1575 1515 9508;9509;9510;9511;9512;9513;9514;9515;9516 11447;11448;11449;11450;11451;11452;11453;11454;11455;11456;11457;11458 11456 2121 12 AQDPSEVLTMLTNETGFEISSSDATVK Unmodified 2869.3539 0.353899 1575 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.12 1.54 3 3 4 2 3 1 7 9 80.848 80.839 3;4 2.9378E-64 27031 20211116_3431_TMUAki_TMT10x_P_F4 232.44 214.15 56369000 98449000 277820 94524000 64802000 71908000 75724000 35412000 34043000 45612000 69154000 52481000 91849000 4232600 96369000 62382000 73830000 74949000 38152000 37703000 44127000 65623000 18 18 4 18 18 18 18 18 18 18 18 28083000 50400000 108650 48704000 28829000 45371000 37189000 20014000 18750000 24579000 37102000 26147000 47022000 2050200 49756000 27842000 45857000 36715000 21765000 20533000 23817000 35223000 7 7 2 7 7 7 7 7 7 7 7 28285000 48049000 169170 45819000 35974000 26536000 38535000 15398000 15293000 21033000 32052000 26334000 44827000 2182400 46612000 34540000 27973000 38235000 16387000 17170000 20310000 30400000 11 11 2 11 11 11 11 11 11 11 11 14553000000 7225700000 7327100000 1619 1575 1515 9517;9518;9519;9520;9521;9522;9523;9524;9525;9526;9527;9528;9529;9530;9531;9532 11459;11460;11461;11462;11463;11464;11465;11466;11467;11468;11469;11470;11471;11472;11473;11474 11461 16 AQEACGPLEMDSALSVVQNLEK Oxidation (M) 2404.125 0.12502546 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 1 0 By MS/MS 3 0 2 2 75.533 75.347 3 2.087E-05 27432 20211116_3441_TMUAki_TMT10x_S_F3 76.889 63.434 1124200 2046400 43090 1761500 1340900 1198400 1307000 1158400 1344300 1286900 1465200 1047100 1908400 136400 1808800 1287500 1254700 1328600 1183700 1370200 1251600 1409700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1124200 2046400 43090 1761500 1340900 1198400 1307000 1158400 1344300 1286900 1465200 1047100 1908400 136400 1808800 1287500 1254700 1328600 1183700 1370200 1251600 1409700 1 1 1 1 1 1 1 1 1 1 1 232490000 0 232490000 1620 3293 1516 9533;9534 11475;11476 11475 3262 2 AQEAPGQAEPPAAAEVQGAGNENEPR Unmodified 2587.1899 0.18988563 129 O14745 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 37.307 37.232 3 2.6473E-49 10797 20211116_3429_TMUAki_TMT10x_P_F2 204 195.18 144130 241090 0 368070 470650 439290 217170 222110 322370 205520 271200 134190 225440 13128 367590 444780 438250 236790 236290 321540 201410 263200 2 2 0 2 2 2 2 2 2 2 2 125790 208830 0 320210 458160 429380 211690 195840 293530 187160 233230 117100 195270 13128 320430 432990 425440 230140 210650 292890 183150 226860 1 1 0 1 1 1 1 1 1 1 1 18348 32261 0 47864 12488 9911.9 5478.7 26264 28846 18365 37963 17084 30161 0 47160 11798 12806 6647.1 25641 28647 18262 36339 1 1 0 1 1 1 1 1 1 1 1 124520000 115870000 8651200 1621 129 1517 9535;9536 11477;11478 11477 2 AQEEAERLEADR Unmodified 1415.6641 0.66408501 682 P15311 EZR Ezrin yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 32.728 32.743 3 3.047E-15 9004 20211116_3439_TMUAki_TMT10x_S_F1 184.76 160.93 1855300 2996100 320.41 2775100 3157700 2478700 2192700 1658100 1917500 1473500 2399500 1727400 2794900 164250 2842200 3003000 2525000 2266000 1721800 1979900 1446700 2299800 2 2 1 2 2 2 2 2 2 2 2 884710 1458600 320.41 1300400 2193300 1672000 1096700 813950 932410 737820 1173100 823760 1360500 91976 1343300 2075500 1661200 1164700 868590 964290 723730 1124200 1 1 1 1 1 1 1 1 1 1 1 970550 1537500 0 1474700 964340 806650 1096000 844170 985090 735710 1226500 903610 1434400 72275 1498900 927440 863810 1101400 853160 1015600 723000 1175600 1 1 0 1 1 1 1 1 1 1 1 156120000 95374000 60748000 1622 682 1518 9537;9538 11479;11480 11480 2 AQELGHSQSALASAQR Unmodified 1652.823 0.82304527 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 30.98 30.965 3 3.6624E-15 7095 20211116_3433_TMUAki_TMT10x_P_F5 147.09 127.33 309310 518590 10446 582020 1045100 798860 427040 435890 503130 364070 541000 288070 484140 43993 592520 987030 792290 467830 459350 509860 358530 520710 2 2 1 2 2 2 2 2 2 2 2 309310 518590 10446 582020 1045100 798860 427040 435890 503130 364070 541000 288070 484140 43993 592520 987030 792290 467830 459350 509860 358530 520710 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 46748000 46748000 0 1623 1741 1519 9539;9540 11481;11482 11482 2 AQENLNPLVVLNLFK Unmodified 1710.9669 0.96685596 135 O14802 POLR3A DNA-directed RNA polymerase III subunit RPC1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 81.615 81.588 3 1.1266E-12 28881 20211116_3430_TMUAki_TMT10x_P_F3 141 113.04 3614700 5710200 13118 5677600 3824900 5734000 4466100 3610000 3109400 3463700 4154900 3365500 5328100 288970 5795200 3682800 5790200 4454700 3773200 3259800 3388900 3975800 3 3 1 3 3 3 3 3 3 3 3 2664400 4356500 13118 4106500 2620700 4645600 3303100 2725300 2304800 2543000 3155900 2480900 4064100 228150 4215000 2530500 4656300 3283900 2862400 2418600 2491100 3018000 2 2 1 2 2 2 2 2 2 2 2 950280 1353700 0 1571100 1204200 1088300 1163100 884720 804670 920750 999050 884630 1263900 60820 1580200 1152300 1133900 1170800 910880 841200 897770 957730 1 1 0 1 1 1 1 1 1 1 1 474030000 301900000 172130000 1624 135 1520 9541;9542;9543 11483;11484;11485 11483 3 AQEPESGLSEETQVK Unmodified 1630.7686 0.76860967 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS 2 0 1 1 40.718 40.447 3 2.2831E-14 11707 20211116_3429_TMUAki_TMT10x_P_F2 127.66 113.86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1625 1433 1521 9544 11486 11486 1 AQESVGIYEVTHQFVK Unmodified 1833.9261 0.92611336 2990 Q9NWV4 C1orf123 UPF0587 protein C1orf123 yes yes 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 60.519 60.931 3 2.1334E-05 18331 20211116_3445_TMUAki_TMT10x_S_F6 91.475 69.602 17041000 27846000 341550 28194000 19137000 23759000 20335000 26931000 29732000 24125000 25574000 15869000 25984000 1760500 28672000 18400000 24549000 20855000 27138000 29689000 23677000 24799000 3 3 3 3 3 3 3 3 3 3 3 6288800 10005000 97138 9999000 8399500 14361000 9811400 10243000 11265000 8850500 9779300 5856200 9336100 641480 10266000 8095200 14269000 9923300 10581000 11344000 8701300 9479700 1 1 1 1 1 1 1 1 1 1 1 10752000 17840000 244410 18195000 10738000 9397400 10523000 16688000 18467000 15274000 15795000 10013000 16648000 1119000 18405000 10305000 10280000 10931000 16557000 18345000 14976000 15319000 2 2 2 2 2 2 2 2 2 2 2 3212600000 714160000 2498400000 1626 2990 1522 9545;9546;9547 11487;11488;11489 11488 3 AQETEAAPSQAPADEPEPESAAAQSQENQDTRPK Unmodified 3577.6041 0.60407012 3191 Q9UNF1;Q9UNF1-2 MAGED2 Melanoma-associated antigen D2 yes no 0 0 0 1 By MS/MS By matching 2 0.816 1 1 1 2 1 35.804 35.649 4 5.2938E-141 8254 20211116_3428_TMUAki_TMT10x_P_F1 315.84 302.4 104490 146890 0 386550 1018000 728790 315310 322730 488150 174690 331180 97247 137960 15722 382540 958020 712210 361920 344190 483480 176710 324330 2 2 0 2 2 2 2 2 2 2 2 104490 146890 0 386550 1018000 728790 315310 322730 488150 174690 331180 97247 137960 15722 382540 958020 712210 361920 344190 483480 176710 324330 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 207180000 184400000 22777000 1627 3191 1523 9548;9549;9550 11490;11491 11490 2 AQFAQPEILIGTIPGAGGTQR Unmodified 2124.1328 0.13275209 865 P30084 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4.3 3.32 5 2 3 6 4 73.558 73.534 2;3 9.3564E-89 23763 20211116_3436_TMUAki_TMT10x_P_F8 264.03 229.82 19481000 33901000 328440 29703000 21986000 26422000 23305000 18987000 16486000 18093000 23324000 18140000 31617000 1639500 30549000 21126000 26952000 23359000 19653000 17313000 17707000 22288000 11 11 6 11 11 11 11 11 11 11 11 7528600 12215000 159150 11012000 6704700 11948000 7952100 6074200 6253400 6516500 8523900 7010500 11393000 690110 11333000 6465200 11982000 7948400 6485500 6516700 6346200 8152400 4 4 3 4 4 4 4 4 4 4 4 11953000 21686000 169290 18691000 15281000 14474000 15353000 12913000 10233000 11577000 14800000 11130000 20224000 949420 19216000 14661000 14970000 15411000 13168000 10796000 11361000 14135000 7 7 3 7 7 7 7 7 7 7 7 9958400000 4942000000 5016400000 1628 865 1524 9551;9552;9553;9554;9555;9556;9557;9558;9559;9560 11492;11493;11494;11495;11496;11497;11498;11499;11500;11501;11502;11503;11504;11505 11498 14 AQFEGIVTDLIR Unmodified 1360.7351 0.73506511 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4.96 1.57 1 1 2 3 7 5 4 13 10 70.019 70.015 2;3 2.1068E-30 24785 20211116_3434_TMUAki_TMT10x_P_F6 264.17 225.21 224020000 359200000 493580 317670000 245810000 342350000 283730000 231100000 225950000 245920000 269710000 208570000 335020000 16100000 327380000 236480000 344740000 284030000 241020000 233940000 239560000 258820000 20 20 9 20 20 20 20 20 20 20 20 125270000 191980000 202410 168400000 127140000 231340000 157700000 124000000 122910000 136720000 140950000 116630000 179050000 8317000 174400000 122560000 229380000 157290000 131870000 127200000 133000000 135410000 11 11 4 11 11 11 11 11 11 11 11 98750000 167220000 291160 149270000 118670000 111010000 126030000 107100000 103040000 109200000 128760000 91941000 155970000 7783400 152980000 113930000 115360000 126740000 109150000 106740000 106560000 123420000 9 9 5 9 9 9 9 9 9 9 9 50917000000 26113000000 24804000000 1629 972 1525 9561;9562;9563;9564;9565;9566;9567;9568;9569;9570;9571;9572;9573;9574;9575;9576;9577;9578;9579;9580;9581;9582;9583 11506;11507;11508;11509;11510;11511;11512;11513;11514;11515;11516;11517;11518;11519;11520;11521;11522;11523;11524;11525;11526;11527;11528;11529;11530 11514 25 AQFEGIVTDLIRR Unmodified 1516.8362 0.83617614 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 5.44 2.54 2 1 2 2 2 5 4 69.337 69.405 3 3.5981E-30 23963 20211116_3439_TMUAki_TMT10x_S_F1 251.63 208.82 76243000 120770000 231540 113740000 108000000 107300000 83240000 105820000 92908000 93244000 101160000 70986000 112670000 3622100 116430000 102910000 109670000 86028000 107290000 94387000 91585000 97326000 9 9 4 9 9 9 9 9 9 9 9 36990000 60265000 0 55206000 40843000 70080000 44223000 52271000 45320000 49576000 49980000 34441000 56215000 337470 56899000 39243000 70076000 44714000 53964000 46223000 48530000 48070000 3 3 0 3 3 3 3 3 3 3 3 39253000 60508000 231540 58530000 67162000 37220000 39017000 53553000 47588000 43668000 51176000 36545000 56453000 3284600 59531000 63667000 39599000 41314000 53329000 48165000 43056000 49256000 6 6 4 6 6 6 6 6 6 6 6 20188000000 11203000000 8985000000 1630 972 1526 9584;9585;9586;9587;9588;9589;9590;9591;9592 11531;11532;11533;11534;11535;11536;11537;11538;11539;11540;11541 11536 11 AQFFVEDASTASALK Unmodified 1583.7831 0.78313752 3090 Q9UBU9;Q9UBU9-2 NXF1 Nuclear RNA export factor 1 yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 66.871 66.947 3 0.01291 20484 20211116_3444_TMUAki_TMT10x_S_F5 53.169 33.33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1631 3090 1527 9593;9594 11542;11543 11543 2 AQFLVEK Unmodified 833.4647 0.46470391 2593 Q99623 PHB2 Prohibitin-2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.745 3 2 1 3 3 50.036 50.136 2 0.0022485 13526 20211116_3434_TMUAki_TMT10x_P_F6 128.1 68.894 13163000 20393000 2072.2 20335000 24219000 24500000 15653000 14642000 14689000 13940000 16814000 12256000 19029000 1225400 20811000 23005000 24480000 16295000 15363000 15061000 13644000 16154000 2 2 1 2 2 2 2 2 2 2 2 13163000 20393000 2072.2 20335000 24219000 24500000 15653000 14642000 14689000 13940000 16814000 12256000 19029000 1225400 20811000 23005000 24480000 16295000 15363000 15061000 13644000 16154000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 303130000 303130000 0 1632 2593 1528 9595;9596;9597;9598;9599;9600 11544;11545;11546;11547;11548;11549;11550 11547 7 AQGPAASAEEPKPVEAPAANSDQTVTVKE Unmodified 2891.4149 0.41485977 1437 P80723;P80723-2 BASP1 Brain acid soluble protein 1 yes no 0 0 0 2 By MS/MS By MS/MS 3.79 0.86 1 4 6 3 7 7 44.373 44.406 3;4;5 1.6123E-77 12542 20211116_3442_TMUAki_TMT10x_S_F4 239.26 220.7 28470000 47244000 209470 62748000 46896000 46012000 30260000 48123000 58321000 38057000 47196000 26506000 44141000 2288200 62668000 44532000 47954000 32432000 48520000 57709000 37583000 45873000 25 25 15 25 25 25 25 25 25 25 25 10561000 16633000 140610 22866000 33729000 33501000 18086000 18375000 21716000 13909000 17116000 9832300 15543000 1025600 23046000 31936000 33132000 19276000 19312000 21771000 13768000 16654000 12 12 8 12 12 12 12 12 12 12 12 17908000 30611000 68852 39882000 13167000 12512000 12174000 29748000 36604000 24149000 30080000 16674000 28598000 1262600 39622000 12596000 14822000 13157000 29208000 35938000 23815000 29219000 13 13 7 13 13 13 13 13 13 13 13 13137000000 8919900000 4217100000 1633 1437 1529 9601;9602;9603;9604;9605;9606;9607;9608;9609;9610;9611;9612;9613;9614 11551;11552;11553;11554;11555;11556;11557;11558;11559;11560;11561;11562;11563;11564;11565;11566;11567;11568;11569;11570;11571;11572;11573;11574;11575 11569 25 AQHPDYSFGELSR Unmodified 1505.6899 0.68990583 2103 Q86U86;Q86U86-8;Q86U86-5;Q86U86-4;Q86U86-7;Q86U86-3;Q86U86-9;Q86U86-2 PBRM1 Protein polybromo-1 yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 38.551 38.655 3 1.1891E-06 10124 20211116_3431_TMUAki_TMT10x_P_F4 115.83 105.83 1085000 1604600 2691 2002100 2204500 2092700 1206300 1319100 1511500 1113100 1546000 1010300 1498800 108140 2015800 2088900 2108900 1285200 1374000 1525600 1095600 1490300 2 2 2 2 2 2 2 2 2 2 2 748550 1096500 1192.9 1459900 1893400 1821600 891030 1093700 1276900 899130 1148800 696980 1024500 79205 1469100 1790300 1817100 968160 1142900 1277600 886160 1112100 1 1 1 1 1 1 1 1 1 1 1 336440 508100 1498.1 542210 311190 271080 315260 225360 234660 213990 397190 313270 474240 28936 546680 298580 291860 317070 231100 248020 209470 378120 1 1 1 1 1 1 1 1 1 1 1 320880000 291570000 29317000 1634 2103 1530 9615;9616 11576;11577 11576 2 AQHQQALSSLELLNVLFR Unmodified 2066.1273 0.12727278 2629 Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 0 0 0 0 By matching By MS/MS 3 0.816 1 1 1 1 2 78.449 78.398 3 5.4739E-06 26531 20211116_3442_TMUAki_TMT10x_S_F4 89.344 77.761 3687000 7302700 113870 6188200 5157600 4634000 5014800 3902400 3721700 3666900 4873400 3433900 6810100 432400 6368400 4948600 4800200 5054100 3997600 3883700 3591000 4665500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3687000 7302700 113870 6188200 5157600 4634000 5014800 3902400 3721700 3666900 4873400 3433900 6810100 432400 6368400 4948600 4800200 5054100 3997600 3883700 3591000 4665500 1 1 1 1 1 1 1 1 1 1 1 2101100000 1380600000 720510000 1635 2629 1531 9617;9618;9619 11578 11578 1 AQIAGYLYGVSPPDNPQVK Unmodified 2016.0316 0.031641064 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 By MS/MS By MS/MS 6.4 2.73 1 1 3 2 3 67.476 67.578 3;4 2.3941E-08 20744 20211116_3447_TMUAki_TMT10x_S_F8 106.93 95.489 26619000 44042000 110540 40176000 29814000 41450000 31606000 31256000 27771000 30179000 31571000 24785000 41082000 2220900 41278000 28630000 41919000 31847000 32261000 28555000 29519000 30338000 6 6 3 6 6 6 6 6 6 6 6 14059000 22145000 21049 21048000 15468000 27135000 17835000 13484000 13032000 14379000 15488000 13090000 20660000 1074400 21641000 14884000 26961000 17819000 14425000 13555000 14006000 14865000 3 3 1 3 3 3 3 3 3 3 3 12560000 21897000 89489 19128000 14346000 14315000 13770000 17773000 14739000 15800000 16083000 11695000 20422000 1146500 19637000 13746000 14958000 14028000 17836000 15000000 15512000 15473000 3 3 2 3 3 3 3 3 3 3 3 4086300000 2693700000 1392600000 1636 1997 1532 9620;9621;9622;9623;9624 11579;11580;11581;11582;11583;11584;11585 11584 7 AQIEQVIANCEHK Unmodified 1538.7511 0.75112588 2352 Q92621 NUP205 Nuclear pore complex protein Nup205 yes yes 0 0 0 0 By MS/MS 4 0 1 1 48.313 48.461 3 9.1068E-05 13792 20211116_3431_TMUAki_TMT10x_P_F4 92.063 77.905 1803900 2624100 0 2701200 3245500 3687200 2369800 2143800 2215800 1955900 2371300 1679400 2448800 148980 2764900 3088600 3660800 2444800 2252000 2266500 1917900 2282700 1 1 0 1 1 1 1 1 1 1 1 1803900 2624100 0 2701200 3245500 3687200 2369800 2143800 2215800 1955900 2371300 1679400 2448800 148980 2764900 3088600 3660800 2444800 2252000 2266500 1917900 2282700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 236540000 236540000 0 1637 2352 1533 9625 11586 11586 1 AQIHDLVLVGGSTR Unmodified 1464.8049 0.80487601 596 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 0 0 By MS/MS By MS/MS 6.09 1.62 1 2 3 3 2 5 6 45.424 45.605 2;3 1.1826E-29 14050 20211116_3446_TMUAki_TMT10x_S_F7 204.31 175.51 58149000 91323000 520610 103090000 81706000 84187000 66858000 72644000 74293000 67041000 83223000 54140000 85258000 4629500 104050000 77953000 86671000 68824000 74274000 75572000 65707000 80006000 19 19 11 19 19 19 19 19 19 19 19 24190000 35578000 77160 41240000 48655000 53498000 32721000 29793000 31047000 28384000 33098000 22519000 33219000 1619000 41855000 46220000 53211000 33972000 31446000 31731000 27779000 31865000 7 7 3 7 7 7 7 7 7 7 7 33959000 55745000 443450 61846000 33051000 30689000 34137000 42851000 43246000 38657000 50125000 31621000 52039000 3010400 62196000 31732000 33459000 34852000 42829000 43841000 37928000 48141000 12 12 8 12 12 12 12 12 12 12 12 17854000000 9648800000 8205500000 1638 596 1534 9626;9627;9628;9629;9630;9631;9632;9633;9634;9635;9636 11587;11588;11589;11590;11591;11592;11593;11594;11595;11596;11597;11598;11599;11600;11601;11602;11603;11604;11605;11606;11607 11604 21 AQILPIR Acetyl (Protein N-term) 851.52289 0.52288749 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 1 0 0 0 By MS/MS By MS/MS 4.14 0.639 1 4 2 3 4 59.773 59.75 1;2 0.0013403 18799 20211116_3442_TMUAki_TMT10x_S_F4 94.669 94.669 3176500 5036800 60116 5233600 3743300 6345100 3873300 4076000 3714900 3670700 4302000 2958000 4700600 325510 5341900 3596000 6344400 3917100 4246600 3807000 3601700 4131800 4 4 3 4 4 4 4 4 4 4 4 3019000 4759900 58922 4943100 3564800 6186200 3715100 3907900 3528700 3500300 4087700 2811400 4442100 311040 5048500 3425400 6174300 3754700 4076100 3617900 3435300 3925900 3 3 2 3 3 3 3 3 3 3 3 157500 276920 1194 290470 178450 158850 158210 168070 186130 170450 214320 146660 258450 14464 293400 170670 170150 162400 170490 189130 166370 205880 1 1 1 1 1 1 1 1 1 1 1 2672600000 1213600000 1459000000 1639 1471 1535 9637;9638;9639;9640;9641;9642;9643 11608;11609;11610;11611;11612 11612 5 AQINIREDPK Unmodified 1182.6357 0.63568542 416 O95239;O95239-2;Q2VIQ3 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 0 0 0 1 By MS/MS 5 0 1 1 33.452 33.63 3 0.047876 6992 20211116_3444_TMUAki_TMT10x_S_F5 47.361 15.299 409190 581460 3975.3 721450 339980 312770 350620 390870 416670 336480 541010 381030 543090 36660 720000 326490 345590 357140 391840 425410 330860 518050 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 409190 581460 3975.3 721450 339980 312770 350620 390870 416670 336480 541010 381030 543090 36660 720000 326490 345590 357140 391840 425410 330860 518050 1 1 1 1 1 1 1 1 1 1 1 14350000 0 14350000 1640 416 1536 9644 11613 11613 1 AQIQQFHSQIAAQTSASVLAEELHK Unmodified 2734.4038 0.40384158 2107 Q86UP2;Q86UP2-3;Q86UP2-4;Q86UP2-2 KTN1 Kinectin yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 60.755 61.108 4 1.0819E-38 18618 20211116_3436_TMUAki_TMT10x_P_F8 196.18 182.02 22601000 40327000 475550 38753000 25369000 38880000 26018000 25553000 24132000 26654000 28981000 21047000 37623000 2102400 39647000 24370000 39301000 26299000 26686000 24805000 25986000 27807000 7 7 6 7 7 7 7 7 7 7 7 14175000 24621000 284050 24149000 15134000 28985000 16696000 15771000 14714000 16519000 17037000 13200000 22972000 1200100 24742000 14568000 28932000 16792000 16724000 15138000 16103000 16363000 4 4 3 4 4 4 4 4 4 4 4 8425700 15705000 191510 14604000 10235000 9895300 9321900 9782100 9418100 10134000 11945000 7846500 14651000 902360 14906000 9802300 10369000 9506300 9962100 9666700 9883300 11444000 3 3 3 3 3 3 3 3 3 3 3 6578000000 3526800000 3051300000 1641 2107 1537 9645;9646;9647;9648 11614;11615;11616;11617;11618;11619;11620 11617 7 AQIWDTAGQER Unmodified 1273.6051 0.60511357 1836 Q15907;P62491;P62491-2;Q15907-2 RAB11B;RAB11A Ras-related protein Rab-11B;Ras-related protein Rab-11A yes no 0 0 0 0 By MS/MS By matching 3.67 0.471 1 2 2 1 42.378 42.497 2 1.5076E-23 11416 20211116_3431_TMUAki_TMT10x_P_F4 250.72 200.6 1422100 2080000 19913 3541300 7391400 3677600 2782500 1425500 1513200 1182700 2370100 1324100 1946400 198500 3511500 6971100 3687500 3024100 1555700 1625400 1165100 2259800 2 2 1 2 2 2 2 2 2 2 2 1422100 2080000 19913 3541300 7391400 3677600 2782500 1425500 1513200 1182700 2370100 1324100 1946400 198500 3511500 6971100 3687500 3024100 1555700 1625400 1165100 2259800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 391820000 301480000 90343000 1642 1836 1538 9649;9650;9651 11621;11622 11622 2 AQKIDPENAEFLTALCELR Unmodified 2217.11 0.10996774 1620 Q13325;Q13325-2 IFIT5 Interferon-induced protein with tetratricopeptide repeats 5 yes no 0 0 0 1 By MS/MS By MS/MS 5.8 0.748 2 2 1 3 2 76.011 76.034 3 2.2143E-10 24133 20211116_3434_TMUAki_TMT10x_P_F6 109.65 99.728 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1643 1620 1539 9652;9653;9654;9655;9656 11623;11624;11625;11626;11627 11624 5 AQLADSFHLQQFFR Unmodified 1706.8529 0.85288884 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 70.24 70.018 3 2.5491E-19 23729 20211116_3429_TMUAki_TMT10x_P_F2 171.76 152.7 8995900 15922000 171070 14286000 11986000 20831000 12203000 18000000 17084000 16811000 14769000 8377300 14850000 939950 14788000 11508000 20753000 12518000 18408000 17085000 16468000 14319000 4 4 3 4 4 4 4 4 4 4 4 5359000 9236300 92128 8283100 6845800 15438000 7750700 10589000 10064000 9701500 8523600 4990400 8614900 550980 8624500 6592400 15177000 7886200 10984000 10082000 9511500 8270100 2 2 2 2 2 2 2 2 2 2 2 3636900 6685200 78946 6003000 5140600 5392500 4452200 7411300 7020700 7109500 6245300 3386900 6235500 388970 6163100 4916000 5576500 4631600 7424400 7002500 6956000 6048700 2 2 1 2 2 2 2 2 2 2 2 1886200000 1031000000 855180000 1644 1663 1540 9657;9658 11628;11629;11630;11631 11628 4 AQLDQTGQHLFCVCGTR Unmodified 1989.9149 0.91491352 1563 Q12788 TBL3 Transducin beta-like protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 47.921 48.46 3 1.8087E-36 15223 20211116_3446_TMUAki_TMT10x_S_F7 214.5 202.58 7484700 13073000 0 14278000 11543000 11804000 7274700 11959000 10896000 9432700 10932000 6967600 12203000 275820 14444000 10950000 12181000 7714400 12075000 10928000 9316600 10545000 4 4 0 4 4 4 4 4 4 4 4 2803500 5208300 0 6144100 7700500 8209200 4588800 5373000 4991300 4269500 5042100 2609500 4863400 196320 6232800 7298600 8171900 4829800 5573000 5062000 4215200 4862400 2 2 0 2 2 2 2 2 2 2 2 4681200 7864800 0 8134300 3842800 3594500 2685900 6585700 5905100 5163300 5889900 4358100 7339700 79501 8211400 3651500 4009100 2884600 6502400 5866000 5101300 5682300 2 2 0 2 2 2 2 2 2 2 2 1235500000 707810000 527700000 1645 1563 1541 9659;9660 11632;11633;11634;11635 11634 4 AQLEEEAAAAEERPLVFLCSGCR Unmodified 2605.2265 0.22647084 3024 Q9NYP9 MIS18A Protein Mis18-alpha yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 72.253 72.044 3 1.8488E-77 26147 20211116_3441_TMUAki_TMT10x_S_F3 266.38 244.99 12731000 21015000 129000 19757000 13359000 15786000 13978000 10813000 9639100 10892000 15065000 11854000 19604000 1094500 20185000 12827000 16215000 14012000 11247000 10189000 10635000 14365000 6 6 3 6 6 6 6 6 6 6 6 4365900 6639800 0 5919200 3411300 6653200 4439200 3322300 3146900 3173400 4814400 4064700 6192900 299260 6100500 3293500 6657700 4409200 3541600 3317200 3105500 4592700 2 2 0 2 2 2 2 2 2 2 2 8365400 14375000 129000 13838000 9948100 9132700 9539000 7490300 6492200 7718900 10250000 7789600 13411000 795220 14084000 9533500 9557100 9602900 7705300 6871400 7529300 9771900 4 4 3 4 4 4 4 4 4 4 4 1554600000 459230000 1095300000 1646 3024 1542 9661;9662;9663;9664 11636;11637;11638;11639;11640;11641 11641 6 AQLFALTGVQPAR Unmodified 1370.767 0.76703394 1220 P54578;P54578-2;P54578-3 USP14 Ubiquitin carboxyl-terminal hydrolase 14 yes no 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 2 4 4 5 5 63.278 63.147 2;3 3.957E-25 22513 20211116_3441_TMUAki_TMT10x_S_F3 223.96 186.4 27698000 45004000 138850 45113000 27809000 42846000 31422000 35615000 37971000 35693000 36534000 25787000 41994000 2026500 45981000 26738000 43626000 31887000 36578000 38291000 34857000 35288000 9 9 2 9 9 9 9 9 9 9 9 13262000 20277000 34552 19915000 15042000 26790000 16334000 15907000 16187000 16262000 15996000 12347000 18919000 992980 20445000 14447000 26624000 16497000 16733000 16467000 15868000 15437000 5 5 1 5 5 5 5 5 5 5 5 14436000 24727000 104300 25197000 12767000 16056000 15088000 19708000 21784000 19431000 20538000 13440000 23075000 1033500 25536000 12290000 17002000 15390000 19845000 21824000 18989000 19851000 4 4 1 4 4 4 4 4 4 4 4 4259200000 2415300000 1843800000 1647 1220 1543 9665;9666;9667;9668;9669;9670;9671;9672;9673;9674 11642;11643;11644;11645;11646;11647;11648;11649;11650;11651;11652;11653;11654;11655 11651 14 AQLGQEEEERGECLAR Unmodified 1873.8588 0.85883843 1493 Q02410;Q02410-2 APBA1 Amyloid beta A4 precursor protein-binding family A member 1 yes no 0 0 0 1 By MS/MS By matching 1.33 0.471 2 1 2 1 34.043 33.965 3 3.1857E-36 7584 20211116_3428_TMUAki_TMT10x_P_F1 216.29 197.93 301110 445730 7690 598010 895940 750820 394330 370980 485450 329770 440760 280420 416480 40462 601600 846920 746920 429040 395120 488290 323770 426570 2 2 2 2 2 2 2 2 2 2 2 301110 445730 7690 598010 895940 750820 394330 370980 485450 329770 440760 280420 416480 40462 601600 846920 746920 429040 395120 488290 323770 426570 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 90096000 75318000 14777000 1648 1493 1544 9675;9676;9677 11656;11657 11656 2 AQLGVQAFADALLIIPK Unmodified 1767.0295 0.02945622 982 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 0 By MS/MS By MS/MS 3 0.756 2 3 2 3 4 81.834 81.818 2;3 1.6558E-21 27433 20211116_3431_TMUAki_TMT10x_P_F4 161.66 146.4 13929000 24083000 46815 20660000 16630000 27559000 23115000 19879000 20586000 22178000 21364000 12969000 22459000 858260 21422000 16108000 27477000 23029000 20668000 21081000 21566000 20585000 9 9 4 9 9 9 9 9 9 9 9 6997700 12733000 0 11603000 7827100 18049000 11036000 11314000 11464000 12303000 11327000 6515200 11877000 225720 12014000 7583000 17838000 11039000 11873000 11639000 11975000 10931000 4 4 0 4 4 4 4 4 4 4 4 6930900 11350000 46815 9056700 8802700 9509500 12079000 8564300 9122400 9875700 10037000 6453600 10582000 632540 9408000 8524800 9638500 11989000 8794500 9442300 9591100 9654100 5 5 4 5 5 5 5 5 5 5 5 3694600000 2039600000 1655000000 1649 982 1545 9678;9679;9680;9681;9682;9683;9684 11658;11659;11660;11661;11662;11663;11664;11665;11666;11667 11660 10 AQLLQPTLEINPR Unmodified 1491.8409 0.84092717 1578 Q12931;Q12931-2 TRAP1 Heat shock protein 75 kDa, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 7.42 0.698 4 11 18 8 25 60.16 60.338 2;3 1.4887E-53 4846 20211116_3447_TMUAki_TMT10x_S_F8 306.48 284.88 32626000 53178000 393290 52453000 38034000 45205000 34658000 35988000 34964000 34833000 43672000 30379000 49618000 2973300 53454000 36397000 46292000 35341000 37021000 35866000 34067000 41859000 25 25 13 25 25 25 25 25 25 25 25 16288000 24042000 156160 24229000 19857000 28647000 17654000 16576000 16845000 16547000 21395000 15166000 22435000 1463600 24770000 18988000 28640000 17997000 17462000 17334000 16162000 20498000 4 4 3 4 4 4 4 4 4 4 4 16338000 29136000 237140 28224000 18177000 16557000 17004000 19411000 18119000 18286000 22277000 15214000 27183000 1509700 28684000 17409000 17651000 17344000 19559000 18532000 17905000 21361000 21 21 10 21 21 21 21 21 21 21 21 8967700000 5832000000 3135700000 1650 1578 1546 9685;9686;9687;9688;9689;9690;9691;9692;9693;9694;9695;9696;9697;9698;9699;9700;9701;9702;9703;9704;9705;9706;9707;9708;9709;9710;9711;9712;9713;9714;9715;9716;9717 11668;11669;11670;11671;11672;11673;11674;11675;11676;11677;11678;11679;11680;11681;11682;11683;11684;11685;11686;11687;11688;11689;11690;11691;11692;11693;11694;11695;11696;11697;11698;11699;11700;11701;11702 11688 35 AQLNIGNVLPVGTMPEGTIVCCLEEKPGDR Unmodified 3266.6098 0.6097533 1384 P62917 RPL8 60S ribosomal protein L8 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0.632 1 3 1 3 2 62.811 62.831 3;4 5.108E-10 27509 20211116_3446_TMUAki_TMT10x_S_F7 86.32 80.952 11391000 18709000 315730 18503000 13096000 18229000 15354000 10757000 9872400 11819000 13728000 10608000 17457000 1257500 18887000 12633000 18419000 15287000 11346000 10420000 11499000 13124000 6 6 4 6 6 6 6 6 6 6 6 6311000 9913800 200140 9508400 6247200 12977000 7877400 7345800 6841800 7421500 7790600 5877700 9249100 703860 9780600 6043100 12880000 7873100 7755200 7039300 7245100 7486000 4 4 2 4 4 4 4 4 4 4 4 5079500 8795200 115590 8995000 6848500 5251600 7476600 3410900 3030600 4397200 5937500 4730400 8207600 553630 9106300 6589500 5539500 7413400 3590400 3380900 4253900 5637700 2 2 2 2 2 2 2 2 2 2 2 7628500000 3017500000 4610900000 1651 1384 1547 9718;9719;9720;9721;9722 11703;11704;11705;11706;11707 11707 5 AQLNIGNVLPVGTMPEGTIVCCLEEKPGDR Oxidation (M) 3282.6047 0.60466793 1384 P62917 RPL8 60S ribosomal protein L8 yes yes 0 0 1 1 By matching By MS/MS 6.17 0.687 1 3 2 2 4 77.232 77.241 3;4 3.8281E-21 24985 20211116_3445_TMUAki_TMT10x_S_F6 139.67 130.68 6269500 10848000 28306 8631100 8109600 8896700 7814500 7045400 6579200 7771500 7930700 5837400 10114000 526350 8965700 7767200 9005400 7903800 7278400 6795200 7560100 7608600 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6269500 10848000 28306 8631100 8109600 8896700 7814500 7045400 6579200 7771500 7930700 5837400 10114000 526350 8965700 7767200 9005400 7903800 7278400 6795200 7560100 7608600 4 4 2 4 4 4 4 4 4 4 4 13837000000 5175800000 8661300000 1652 1384 1547 9723;9724;9725;9726;9727;9728 11708;11709;11710;11711 11708 1856 4 AQLSDYSDIVTTLDLAPPTK Unmodified 2147.0998 0.099780209 255 O60216 RAD21 Double-strand-break repair protein rad21 homolog yes yes 0 0 0 0 By MS/MS 6 0 1 1 79.098 79.09 3 0.0027492 25729 20211116_3445_TMUAki_TMT10x_S_F6 60.032 50.985 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1653 255 1548 9729 11712 11712 1 AQNDLIWNIKDELK Unmodified 1698.8941 0.89408495 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 1 By MS/MS 7 0 1 1 72.91 73.189 3 0.00013733 24954 20211116_3435_TMUAki_TMT10x_P_F7 88.73 69.152 7309100 10169000 150390 11879000 7846400 10137000 8004800 4952400 4311500 4841400 7673900 6806600 9495400 753660 11972000 7536600 10318000 7997000 5293600 4667200 4732900 7298600 1 1 1 1 1 1 1 1 1 1 1 7309100 10169000 150390 11879000 7846400 10137000 8004800 4952400 4311500 4841400 7673900 6806600 9495400 753660 11972000 7536600 10318000 7997000 5293600 4667200 4732900 7298600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 543480000 543480000 0 1654 586 1549 9730 11713 11713 1 AQNDLIWNIKDELKK Unmodified 1826.989 0.98904797 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 2 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 68.034 68.148 4 7.6099E-14 21484 20211116_3436_TMUAki_TMT10x_P_F8 141.22 122.17 59070000 95764000 322330 101490000 87393000 96517000 79770000 46270000 36703000 50547000 72488000 55001000 89379000 5412600 103050000 83612000 97502000 79979000 49708000 40493000 49191000 68819000 7 7 3 7 7 7 7 7 7 7 7 35635000 57904000 220810 60925000 63236000 75613000 58384000 27185000 21823000 30310000 43747000 33181000 54042000 3507500 62160000 60523000 75035000 58343000 30178000 24579000 29474000 41522000 4 4 2 4 4 4 4 4 4 4 4 23434000 37860000 101520 40561000 24157000 20904000 21386000 19085000 14880000 20237000 28741000 21819000 35338000 1905200 40894000 23090000 22467000 21636000 19531000 15915000 19717000 27297000 3 3 1 3 3 3 3 3 3 3 3 6308500000 4023400000 2285100000 1655 586 1550 9731;9732;9733;9734;9735;9736 11714;11715;11716;11717;11718;11719;11720 11717 7 AQNKPFYVVAESFK Unmodified 1626.8406 0.84059282 1696 Q14232 EIF2B1 Translation initiation factor eIF-2B subunit alpha yes yes 0 0 0 1 By MS/MS By MS/MS 3.57 2.82 1 4 2 5 2 63.681 63.467 3;4 5.4094E-14 19783 20211116_3440_TMUAki_TMT10x_S_F2 150.57 131.98 43585000 73884000 498390 72422000 57524000 72577000 48885000 62453000 60962000 58281000 60300000 40586000 68936000 4273200 73988000 54970000 73699000 50412000 63884000 61466000 57092000 58190000 8 8 8 8 8 8 8 8 8 8 8 21619000 35064000 190970 34482000 31013000 50923000 28903000 30379000 29399000 28709000 29296000 20131000 32716000 2101900 35464000 29695000 50402000 29443000 31874000 29883000 28108000 28264000 5 5 5 5 5 5 5 5 5 5 5 21966000 38820000 307420 37940000 26511000 21653000 19982000 32075000 31563000 29572000 31004000 20455000 36220000 2171300 38524000 25275000 23298000 20969000 32010000 31583000 28984000 29926000 3 3 3 3 3 3 3 3 3 3 3 6164600000 4016400000 2148200000 1656 1696 1551 9737;9738;9739;9740;9741;9742;9743 11721;11722;11723;11724;11725;11726;11727;11728;11729;11730 11730 10 AQNVTLEAILQNATSDNPVVQLSAVQAAR Unmodified 3020.5891 0.58907616 98 O00505 KPNA3 Importin subunit alpha-4 yes yes 0 0 0 0 By MS/MS 1 0 1 1 80.841 80.811 3 8.5218E-05 28543 20211116_3439_TMUAki_TMT10x_S_F1 67.367 52.604 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1657 98 1552 9744 11731 11731 1 AQPAQPADEPAEKADEPMEH Oxidation (M) 2175.9379 0.93787661 806 P25786;P25786-2 PSMA1 Proteasome subunit alpha type-1 yes no 0 0 1 1 By MS/MS By MS/MS 1.6 0.8 3 1 1 3 2 32.255 32.168 3;4 1.2848E-12 6833 20211116_3428_TMUAki_TMT10x_P_F1 124.25 111.07 784720 1314400 2765.7 1512000 4479200 1862700 1223000 796920 1359900 778540 1491200 730630 1227200 114580 1533800 4212900 1852000 1415000 863490 1382100 761120 1434400 4 4 2 4 4 4 4 4 4 4 4 616360 1022000 2765.7 1179700 4266900 1693200 987790 631120 1061200 601300 1160900 573890 954190 101450 1200000 4008800 1669400 1175700 694390 1079900 588490 1116800 3 3 2 3 3 3 3 3 3 3 3 168360 292460 0 332310 212350 169490 235190 165790 298720 177240 330320 156750 273050 13128 333760 204090 182630 239330 169100 302240 172630 317670 1 1 0 1 1 1 1 1 1 1 1 287610000 203290000 84324000 1658 806 1553 9745;9746;9747;9748;9749 11732;11733;11734;11735 11732 957 4 AQPAQPADEPAEKADEPMEH Unmodified 2159.943 0.94296199 806 P25786;P25786-2 PSMA1 Proteasome subunit alpha type-1 yes no 0 0 0 1 By MS/MS 1 0 1 1 34.953 34.953 3 1.9855E-24 7959 20211116_3428_TMUAki_TMT10x_P_F1 168.3 160.49 235320 345070 1278.3 599390 1886400 600990 454470 175870 196430 147150 487190 219100 322940 41071 593540 1772700 602590 527880 199410 221450 144890 460980 2 2 1 2 2 2 2 2 2 2 2 235320 345070 1278.3 599390 1886400 600990 454470 175870 196430 147150 487190 219100 322940 41071 593540 1772700 602590 527880 199410 221450 144890 460980 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 56117000 56117000 0 1659 806 1553 9750 11736;11737 11736 2 AQPDDPESQMACHVFR Oxidation (M) 1902.7989 0.79888071 266 O60343;O60343-2;O60343-3 TBC1D4 TBC1 domain family member 4 yes no 0 0 1 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 33.515 33.382 3 3.1325E-05 10438 20211116_3441_TMUAki_TMT10x_S_F3 86.262 76.074 213860 353330 480.52 405320 287370 237580 264860 185730 206060 188170 280710 199100 329890 16477 407310 274830 251210 268020 191530 214850 183680 268480 3 3 1 3 3 3 3 3 3 3 3 74059 108320 0 142860 144770 117600 97918 57879 57107 62458 82837 68934 101200 4399.7 142920 137460 120020 100510 61998 60796 60811 79113 2 2 0 2 2 2 2 2 2 2 2 139800 245020 480.52 262460 142600 119980 166940 127850 148950 125710 197880 130170 228690 12077 264390 137370 131190 167510 129530 154060 122870 189370 1 1 1 1 1 1 1 1 1 1 1 20657000 2211000 18446000 1660 266 1554 9751;9752;9753 11738;11739;11740;11741 11741 213 4 AQPDDPESQMACHVFR Unmodified 1886.804 0.80396609 266 O60343;O60343-2;O60343-3 TBC1D4 TBC1 domain family member 4 yes no 0 0 0 0 By MS/MS By matching 3.5 0.5 1 1 1 1 42.687 42.818 3 1.1819E-11 12952 20211116_3430_TMUAki_TMT10x_P_F3 139.6 127.69 181510 316090 0 393130 439190 439960 349980 196690 188260 162150 243260 168990 295230 16557 396320 418730 439840 354660 211230 200550 159790 232960 1 1 0 1 1 1 1 1 1 1 1 181510 316090 0 393130 439190 439960 349980 196690 188260 162150 243260 168990 295230 16557 396320 418730 439840 354660 211230 200550 159790 232960 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 142560000 35634000 106920000 1661 266 1554 9754;9755 11742 11742 1 AQPFVAAANIDDKR Unmodified 1514.7841 0.78414057 1904 Q53GG5-2;Q53GG5-3 PDLIM3 PDZ and LIM domain protein 3 yes no 0 0 0 1 By MS/MS By MS/MS 5.8 0.748 2 2 1 3 2 44.954 45.181 3 2.0245E-23 11827 20211116_3445_TMUAki_TMT10x_S_F6 186.05 165.39 7464700 11729000 44342 13574000 10126000 9196200 6781300 10594000 11231000 8905600 10926000 6950600 10951000 678860 13652000 9626300 9669900 7191200 10650000 11220000 8767200 10550000 4 4 2 4 4 4 4 4 4 4 4 2404400 3243200 0 3864400 5867800 5547400 2831600 3133600 3374500 2442400 2899700 2238700 3028600 242580 3923600 5549700 5493300 3047800 3287200 3392400 2413800 2812000 1 1 0 1 1 1 1 1 1 1 1 5060300 8485500 44342 9709600 4257800 3648800 3949800 7460000 7856200 6463200 8026400 4711900 7922400 436280 9728300 4076600 4176600 4143400 7362600 7827500 6353400 7737600 3 3 2 3 3 3 3 3 3 3 3 994840000 750190000 244650000 1662 1904 1555 9756;9757;9758;9759;9760 11743;11744;11745;11746;11747 11745 5 AQPLEDLAGLK Unmodified 1153.6343 0.63428844 1039 P46013;P46013-2 MKI67 Antigen KI-67 yes no 0 0 0 0 By MS/MS By MS/MS 4.6 0.49 2 3 2 3 64.529 64.5 2 0.00048176 20353 20211116_3431_TMUAki_TMT10x_P_F4 89.9 54.462 10815000 16172000 69105 16292000 12692000 20488000 12191000 11686000 11956000 11779000 11569000 10070000 15091000 935870 16675000 12158000 20415000 12385000 12329000 12160000 11500000 11172000 2 2 1 2 2 2 2 2 2 2 2 10815000 16172000 69105 16292000 12692000 20488000 12191000 11686000 11956000 11779000 11569000 10070000 15091000 935870 16675000 12158000 20415000 12385000 12329000 12160000 11500000 11172000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 375410000 197030000 178380000 1663 1039 1556 9761;9762;9763;9764;9765 11748;11749;11750;11751;11752 11749 5 AQPLSLEELLAK Unmodified 1310.7446 0.74456717 2677 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 77.834 77.824 2 1.2327E-08 24870 20211116_3434_TMUAki_TMT10x_P_F6 144.7 118.96 24761000 38570000 812060 42064000 25117000 31206000 28169000 17609000 16562000 20597000 27085000 23061000 36003000 2814700 42503000 24209000 32155000 28054000 18679000 17730000 19993000 25802000 3 3 3 3 3 3 3 3 3 3 3 13692000 21332000 203820 22464000 12917000 21207000 14987000 10715000 10061000 11793000 15023000 12750000 19909000 1314300 22818000 12450000 21446000 14941000 11456000 10627000 11473000 14338000 2 2 2 2 2 2 2 2 2 2 2 11069000 17238000 608240 19600000 12199000 9998500 13182000 6893600 6500900 8804100 12062000 10311000 16093000 1500400 19685000 11759000 10708000 13113000 7222800 7103300 8519800 11464000 1 1 1 1 1 1 1 1 1 1 1 1856800000 1018400000 838410000 1664 2677 1557 9766;9767;9768 11753;11754;11755 11754 3 AQPPEAGPQGLHDLGR Unmodified 1641.8223 0.82231699 6 A0FGR8;A0FGR8-2;A0FGR8-5;A0FGR8-6 ESYT2 Extended synaptotagmin-2 yes no 0 0 0 0 By MS/MS 4 0 1 1 36.414 36.442 3 0.0013146 8944 20211116_3431_TMUAki_TMT10x_P_F4 66.201 51.599 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1665 6 1558 9769 11756 11756 1 AQPSASLGVGYR Unmodified 1204.62 0.62003536 2534 Q96PK6 RBM14 RNA-binding protein 14 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.756 2 3 2 5 2 36.206 36.545 2;3 2.1154E-30 9931 20211116_3435_TMUAki_TMT10x_P_F7 264.12 188.81 2657900 3964100 15732 4381300 4716200 4426600 2815700 2606800 2986800 2492000 3203800 2474700 3700500 238320 4440900 4473800 4465900 2960800 2738900 3038700 2438500 3083900 13 13 3 13 13 13 13 13 13 13 13 2190700 3212100 15730 3489600 4268800 4118200 2369900 2153100 2487600 2069100 2583700 2039700 2998300 208770 3549800 4045200 4112400 2506900 2285800 2528900 2024200 2489400 9 9 2 9 9 9 9 9 9 9 9 467220 751980 1.6936 891740 447390 308420 445770 453700 499210 422930 620140 434990 702200 29545 891130 428580 353440 453900 453040 509810 414320 594480 4 4 1 4 4 4 4 4 4 4 4 281940000 246010000 35927000 1666 2534 1559 9770;9771;9772;9773;9774;9775;9776 11757;11758;11759;11760;11761;11762;11763;11764;11765;11766;11767;11768;11769 11761 13 AQPSVSLGAAYR Unmodified 1218.6357 0.63568542 2534 Q96PK6 RBM14 RNA-binding protein 14 yes yes 0 0 0 0 By MS/MS By MS/MS 6.92 0.493 2 9 1 3 9 38.089 38.499 2;3 2.1107E-38 11389 20211116_3435_TMUAki_TMT10x_P_F7 281.13 214.09 3547300 5681900 25797 6094200 7198500 7173600 4132400 5220700 5412100 4178800 5294100 3302900 5303400 342910 6204100 6825200 7197500 4391600 5375400 5445700 4124200 5110700 13 13 5 13 13 13 13 13 13 13 13 2517000 4012700 19814 4272400 6296000 6325100 3318100 3686100 3791200 2955500 3754800 2343600 3745300 266090 4370900 5962300 6257700 3536000 3859100 3834900 2916600 3623200 4 4 2 4 4 4 4 4 4 4 4 1030300 1669200 5983 1821800 902540 848530 814370 1534600 1620900 1223300 1539300 959250 1558100 76825 1833200 862870 939880 855630 1516300 1610800 1207600 1487500 9 9 3 9 9 9 9 9 9 9 9 550750000 411690000 139070000 1667 2534 1560 9777;9778;9779;9780;9781;9782;9783;9784;9785;9786;9787;9788 11770;11771;11772;11773;11774;11775;11776;11777;11778;11779;11780;11781;11782;11783;11784;11785;11786 11773 17 AQPSVSLGAPYR Unmodified 1244.6513 0.65133548 2534 Q96PK6 RBM14 RNA-binding protein 14 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 4 2 2 40.761 41.27 2;3 1.2461E-16 11889 20211116_3446_TMUAki_TMT10x_S_F7 210.44 154.32 1718200 2749800 27785 3383400 5708900 5145700 2785200 3185700 3595000 2266600 3112400 1600000 2568200 224230 3433200 5402200 5089400 3003100 3310400 3604700 2251600 3017400 3 3 3 3 3 3 3 3 3 3 3 1583500 2527600 27379 3086600 5601300 5048400 2687000 2943300 3308500 2083000 2881400 1474600 2360600 213070 3138700 5299200 4974700 2897100 3073000 3323500 2069800 2792800 2 2 2 2 2 2 2 2 2 2 2 134660 222180 405.38 296830 107630 97342 98269 242430 286460 183630 231010 125390 207600 11164 294560 102990 114730 105990 237410 281220 181770 224560 1 1 1 1 1 1 1 1 1 1 1 898000000 828770000 69226000 1668 2534 1561 9789;9790;9791;9792 11787;11788;11789;11790 11789 4 AQPVPHYGVPFKPQIPEAR Unmodified 2130.1374 0.13744354 3175 Q9ULW0;Q9ULW0-2 TPX2 Targeting protein for Xklp2 yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 49.935 49.772 4 2.6269E-13 16038 20211116_3439_TMUAki_TMT10x_S_F1 140.16 131.56 12767000 20314000 135970 23078000 19043000 23619000 15514000 19000000 18305000 17309000 17787000 11887000 18966000 814690 23356000 18170000 23924000 16008000 19500000 18482000 16975000 17175000 5 5 2 5 5 5 5 5 5 5 5 8939500 13271000 135970 16004000 14370000 19674000 12234000 12946000 12847000 11593000 12175000 8324600 12394000 612930 16189000 13734000 19665000 12540000 13462000 13019000 11378000 11765000 3 3 2 3 3 3 3 3 3 3 3 3827300 7043200 0 7074000 4672300 3944200 3280100 6053900 5458100 5716500 5612600 3562600 6572200 201760 7167600 4436800 4258500 3467400 6038600 5462900 5597000 5409500 2 2 0 2 2 2 2 2 2 2 2 4153800000 2350400000 1803400000 1669 3175 1562 9793;9794;9795;9796 11791;11792;11793;11794;11795 11794 5 AQPYDPNFYDETYDYGGFTMMFDDRR 2 Oxidation (M) 3245.3019 0.3018802 1329;1330 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 2 1 By MS/MS 4 0 1 1 73.156 73.022 3 0.0007067 24291 20211116_3442_TMUAki_TMT10x_S_F4 60.352 48.936 898830 1773000 40993 1245700 1317900 1793100 1657700 2541200 3823400 2543200 1763100 837210 1652400 118590 1316200 1274700 1809700 1730800 2546000 3721800 2483700 1764600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 898830 1773000 40993 1245700 1317900 1793100 1657700 2541200 3823400 2543200 1763100 837210 1652400 118590 1316200 1274700 1809700 1730800 2546000 3721800 2483700 1764600 2 2 2 2 2 2 2 2 2 2 2 458320000 0 458320000 1670 1329;1330 1563 9797 11796;11797 11797 1780;1781 2 AQQATPGGAAPTIFSR Unmodified 1571.8056 0.80560429 2713 Q9BX68 HINT2 Histidine triad nucleotide-binding protein 2, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 7.8 0.4 1 4 3 2 44.743 44.806 2;3 2.3483E-42 12008 20211116_3436_TMUAki_TMT10x_P_F8 222.56 170.61 3087800 5402300 0 6396600 4558000 5044800 3374900 4506300 4527700 3829000 4649100 2874500 5044600 210630 6435200 4336400 5210600 3520900 4588600 4560000 3767500 4481100 4 4 0 4 4 4 4 4 4 4 4 1405100 2459700 0 2778200 3277900 3688600 2198100 2096300 1989900 1794400 2129700 1307800 2296300 81636 2825300 3111900 3665800 2279600 2202700 2038400 1765000 2050100 2 2 0 2 2 2 2 2 2 2 2 1682700 2942600 0 3618500 1280200 1356200 1176800 2410000 2537800 2034600 2519400 1566700 2748300 128990 3609900 1224600 1544800 1241300 2385900 2521500 2002500 2431000 2 2 0 2 2 2 2 2 2 2 2 936000000 571320000 364680000 1671 2713 1564 9798;9799;9800;9801;9802 11798;11799;11800;11801;11802 11800 5 AQQEDALAQQAFEEAR Unmodified 1803.8388 0.83875492 1671 Q13951-2;Q13951 CBFB Core-binding factor subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 1 0 4 2 2 54.823 54.674 2;3 1.0502E-59 15973 20211116_3428_TMUAki_TMT10x_P_F1 280.23 262.72 11742000 17082000 0 19341000 16021000 20032000 12285000 14400000 14169000 12977000 16029000 10931000 15948000 509590 19582000 15256000 20238000 12715000 14882000 14398000 12733000 15405000 4 4 0 4 4 4 4 4 4 4 4 7549300 11225000 0 12381000 12487000 16575000 9346400 9237700 9347500 8554300 10104000 7027600 10479000 509590 12612000 11882000 16462000 9644700 9742100 9536300 8382700 9724000 3 3 0 3 3 3 3 3 3 3 3 4192600 5856500 0 6960200 3533900 3457100 2938800 5162000 4821100 4422700 5925000 3903800 5468900 0 6970200 3373500 3776300 3070300 5140200 4861500 4349900 5681500 1 1 0 1 1 1 1 1 1 1 1 1668200000 1132000000 536210000 1672 1671 1565 9803;9804;9805;9806 11803;11804;11805;11806 11805 4 AQQEFAAGVFSNPAVR Unmodified 1690.8427 0.84271808 138 O14828;O14828-2 SCAMP3 Secretory carrier-associated membrane protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 6.57 0.495 3 4 4 3 57.005 57.392 2;3 4.1916E-80 18832 20211116_3446_TMUAki_TMT10x_S_F7 321.79 294.04 18484000 32499000 518240 33343000 27034000 31498000 22232000 27639000 26478000 25365000 28237000 17214000 30328000 2082400 33928000 25829000 32115000 22934000 28228000 26813000 24867000 27185000 7 7 4 7 7 7 7 7 7 7 7 9688600 16247000 190050 16666000 16058000 22467000 13799000 14398000 13266000 13099000 14060000 9022200 15162000 1026500 17059000 15349000 22348000 14099000 15007000 13547000 12847000 13539000 4 4 2 4 4 4 4 4 4 4 4 8795400 16251000 328190 16677000 10977000 9031600 8433000 13241000 13212000 12266000 14176000 8191800 15166000 1056000 16869000 10480000 9767000 8834900 13221000 13266000 12020000 13646000 3 3 2 3 3 3 3 3 3 3 3 5059800000 2725200000 2334600000 1673 138 1566 9807;9808;9809;9810;9811;9812;9813 11807;11808;11809;11810;11811;11812;11813 11813 7 AQQEQELAADAFK Unmodified 1447.6943 0.69432251 666 P14314;P14314-2 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 2 3 53.968 53.709 3 3.401E-09 17087 20211116_3429_TMUAki_TMT10x_P_F2 124.42 108.19 21289000 32584000 362540 39771000 28902000 30979000 21718000 27463000 24881000 22354000 28384000 19824000 30431000 2116800 39934000 27548000 32023000 22503000 27947000 25298000 22042000 27273000 6 6 5 6 6 6 6 6 6 6 6 12091000 17218000 81782 20941000 20756000 24121000 14759000 13880000 12778000 12144000 15908000 11257000 16080000 1107300 21148000 19750000 24147000 15223000 14578000 13197000 11932000 15249000 3 3 2 3 3 3 3 3 3 3 3 9198000 15366000 280760 18829000 8146000 6857900 6959100 13583000 12103000 10210000 12476000 8566300 14351000 1009500 18786000 7797900 7876000 7280200 13370000 12101000 10110000 12024000 3 3 3 3 3 3 3 3 3 3 3 1261600000 709360000 552200000 1674 666 1567 9814;9815;9816;9817;9818 11814;11815;11816;11817;11818;11819 11814 6 AQQGIVFLDEVDKIGSVPGIHQLR Unmodified 2618.418 0.41803508 378 O76031 CLPX ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial yes yes 0 0 0 1 By MS/MS 8 0 1 1 75.029 74.903 4 0.10351 23738 20211116_3447_TMUAki_TMT10x_S_F8 32.72 23.901 1394900 2692100 27092 2327300 1861100 1727600 1906400 1502200 1216400 1522700 1972700 1298900 2510600 147420 2391000 1787300 1791900 1910000 1539300 1294500 1486300 1879600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1394900 2692100 27092 2327300 1861100 1727600 1906400 1502200 1216400 1522700 1972700 1298900 2510600 147420 2391000 1787300 1791900 1910000 1539300 1294500 1486300 1879600 1 1 1 1 1 1 1 1 1 1 1 809320000 0 809320000 1675 378 1568 9819 11820 11820 1 AQQMHTGPVLDVCWSDDGSK Oxidation (M) 2245.9732 0.97321626 1431 P78406 RAE1 mRNA export factor yes yes 0 0 1 0 By MS/MS By MS/MS 5 0 2 1 1 49.862 50.046 3 7.867E-07 13516 20211116_3444_TMUAki_TMT10x_S_F5 91.276 82.457 2683600 4467200 16229 4702000 2813500 2264700 2554000 2526000 2459600 2641900 3510300 2498800 4169200 233940 4743800 2691800 2463300 2601300 2558600 2543600 2575400 3353800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2683600 4467200 16229 4702000 2813500 2264700 2554000 2526000 2459600 2641900 3510300 2498800 4169200 233940 4743800 2691800 2463300 2601300 2558600 2543600 2575400 3353800 2 2 1 2 2 2 2 2 2 2 2 293720000 0 293720000 1676 1431 1569 9820;9821 11821;11822;11823 11822 1933 3 AQQNNVEHKVETFSGVYK Unmodified 2077.0229 0.022867292 1332 P62081 RPS7 40S ribosomal protein S7 yes yes 0 0 0 1 By MS/MS By MS/MS 7.14 0.833 2 2 3 4 3 49.032 49.258 3;4 3.1043E-58 14994 20211116_3435_TMUAki_TMT10x_P_F7 253.26 235.97 66695000 118770000 1622700 144640000 96029000 100710000 64267000 74637000 90232000 75133000 89962000 62111000 110920000 7372600 145080000 91372000 104720000 67653000 77217000 90650000 73358000 86791000 9 9 8 9 9 9 9 9 9 9 9 33169000 58732000 1304400 70565000 76372000 82318000 49136000 37820000 45957000 38792000 44052000 30893000 54848000 4570700 71328000 72623000 82135000 51166000 40727000 46824000 37846000 42554000 5 5 5 5 5 5 5 5 5 5 5 33526000 60039000 318280 74079000 19658000 18396000 15131000 36818000 44275000 36340000 45910000 31218000 56075000 2801900 73748000 18749000 22590000 16487000 36490000 43825000 35512000 44237000 4 4 3 4 4 4 4 4 4 4 4 11593000000 7178600000 4414100000 1677 1332 1570 9822;9823;9824;9825;9826;9827;9828 11824;11825;11826;11827;11828;11829;11830;11831;11832;11833 11827 10 AQQNNVEHKVETFSGVYKK Unmodified 2205.1178 0.11783031 1332 P62081 RPS7 40S ribosomal protein S7 yes yes 0 0 0 2 By MS/MS By MS/MS 4 3.21 3 1 1 2 4 3 46.966 47.011 4;5 1.005E-40 12911 20211116_3436_TMUAki_TMT10x_P_F8 204.78 192.1 47139000 83724000 424080 93764000 106920000 115620000 54497000 118880000 108810000 84727000 83179000 43889000 78161000 4419000 95273000 101180000 116510000 59700000 119680000 107410000 84156000 81033000 10 10 5 10 10 10 10 10 10 10 10 27163000 45526000 209520 50516000 93232000 100240000 46515000 65599000 59292000 45709000 45663000 25287000 42499000 2704400 51926000 88190000 98273000 50020000 67849000 59277000 45461000 44472000 6 6 2 6 6 6 6 6 6 6 6 19977000 38198000 214550 43248000 13687000 15379000 7981900 53284000 49515000 39018000 37515000 18602000 35662000 1714600 43347000 12990000 18238000 9680400 51836000 48129000 38695000 36561000 4 4 3 4 4 4 4 4 4 4 4 6621100000 4084000000 2537100000 1678 1332 1571 9829;9830;9831;9832;9833;9834;9835 11834;11835;11836;11837;11838;11839;11840;11841;11842;11843 11838 10 AQREDELTFIK Unmodified 1348.6987 0.69867961 728 P19174-2;P19174 PLCG1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 45.992 45.992 3 4.0793E-06 12799 20211116_3431_TMUAki_TMT10x_P_F4 118.88 86.552 12245000 17774000 352080 22819000 24713000 21639000 14755000 12628000 12209000 10977000 16061000 11404000 16604000 1517200 22906000 23466000 21914000 15408000 13245000 12669000 10789000 15375000 4 4 3 4 4 4 4 4 4 4 4 9407800 13288000 279160 16714000 22110000 19528000 12610000 9319400 8691300 8212700 11836000 8761700 12412000 1217300 16851000 20978000 19491000 13167000 9957400 9125000 8066500 11320000 3 3 2 3 3 3 3 3 3 3 3 2837100 4486100 72918 6105200 2602200 2110900 2144800 3308700 3517500 2764400 4225400 2642100 4192100 299880 6054200 2488100 2423700 2242000 3287300 3543500 2722300 4054200 1 1 1 1 1 1 1 1 1 1 1 515990000 333070000 182920000 1679 728 1572 9836;9837;9838;9839 11844;11845;11846;11847 11845 4 AQRIEYDCELVPR Unmodified 1647.8039 0.80388973 3056 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 1 By MS/MS By MS/MS 3.67 1.15 2 2 2 3 5 4 41.608 41.605 3 7.1257E-23 11343 20211116_3442_TMUAki_TMT10x_S_F4 209.19 178.63 16079000 26605000 75094 31979000 30913000 30817000 16334000 29780000 26040000 22700000 25689000 14970000 24845000 1073100 32227000 29265000 31443000 17631000 30119000 26054000 22462000 24792000 14 14 6 14 14 14 14 14 14 14 14 7579100 13305000 28101 16657000 21859000 24649000 10961000 14779000 12811000 11515000 12709000 7056400 12427000 432250 16875000 20681000 24396000 11745000 15427000 12949000 11381000 12263000 8 8 3 8 8 8 8 8 8 8 8 8500100 13300000 46993 15322000 9053700 6167900 5373100 15001000 13228000 11185000 12980000 7913900 12418000 640880 15351000 8583900 7046600 5885800 14692000 13105000 11081000 12529000 6 6 3 6 6 6 6 6 6 6 6 4097000000 2539100000 1558000000 1680 3056 1573 9840;9841;9842;9843;9844;9845;9846;9847;9848 11848;11849;11850;11851;11852;11853;11854;11855;11856;11857;11858;11859;11860;11861;11862 11861 15 AQRIEYDCELVPRR Unmodified 1803.905 0.90500076 3056 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 2 By MS/MS 5 0 1 1 35.147 35.323 4 1.7312E-07 7640 20211116_3444_TMUAki_TMT10x_S_F5 121.13 85.104 239010 374870 697.96 366680 256910 201650 241970 317960 334660 261250 348360 222550 349760 20717 372190 246000 218220 249090 315710 336890 257490 335630 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 239010 374870 697.96 366680 256910 201650 241970 317960 334660 261250 348360 222550 349760 20717 372190 246000 218220 249090 315710 336890 257490 335630 1 1 1 1 1 1 1 1 1 1 1 16771000 0 16771000 1681 3056 1574 9849 11863 11863 1 AQSINITELNLPQLEMLK Acetyl (Protein N-term) 2096.1187 0.11874151 2576 Q99471;Q99471-3;Q99471-2 PFDN5 Prefoldin subunit 5 yes no 1 0 0 0 By MS/MS By MS/MS 5.33 1.4 2 3 2 4 4 7 8 82.319 82.321 2;3 8.3397E-80 27049 20211116_3445_TMUAki_TMT10x_S_F6 220.23 189.04 29137000 46046000 65908 48732000 32950000 28814000 35069000 11039000 9126900 13433000 29100000 27128000 42976000 1961000 49227000 31638000 30183000 34658000 12193000 11129000 13021000 27453000 17 17 4 17 17 17 17 17 17 17 17 13981000 21003000 29283 22790000 12389000 15567000 14517000 5115100 4096400 6037400 13379000 13017000 19604000 992300 23015000 11923000 16069000 14291000 5755700 4952800 5858500 12619000 8 8 1 8 8 8 8 8 8 8 8 15156000 25044000 36625 25942000 20562000 13247000 20552000 5924000 5030500 7395500 15721000 14112000 23372000 968700 26212000 19715000 14114000 20367000 6436800 6176300 7162200 14835000 9 9 3 9 9 9 9 9 9 9 9 6044100000 2672700000 3371400000 1682 2576 1575 9850;9851;9852;9853;9854;9855;9856;9857;9858;9859;9860;9861;9862;9863;9864 11864;11865;11866;11867;11868;11869;11870;11871;11872;11873;11874;11875;11876;11877;11878;11879;11880 11878 17 AQSINITELNLPQLEMLK Acetyl (Protein N-term);Oxidation (M) 2112.1137 0.11365613 2576 Q99471;Q99471-3;Q99471-2 PFDN5 Prefoldin subunit 5 yes no 1 0 1 0 By MS/MS By MS/MS 5.2 1.17 1 2 2 4 1 3 7 81.232 81.232 2;3 2.2018E-17 26609 20211116_3445_TMUAki_TMT10x_S_F6 62.042 46.412 16533000 27760000 56460 23348000 21376000 27546000 22354000 20091000 20887000 20714000 22412000 15393000 25886000 1345100 24193000 20515000 27635000 22578000 20822000 21367000 20205000 21573000 8 8 2 8 8 8 8 8 8 8 8 4615500 7375900 50910 6544200 3619700 9129400 4795400 5519300 5927300 6457400 6402100 4297700 6879400 400570 6773600 3502400 9059800 4837700 5821900 5997300 6268000 6161200 2 2 1 2 2 2 2 2 2 2 2 11918000 20384000 5549.8 16804000 17756000 18416000 17558000 14572000 14959000 14257000 16010000 11096000 19007000 944550 17420000 17013000 18576000 17740000 15000000 15370000 13937000 15412000 6 6 1 6 6 6 6 6 6 6 6 17299000000 4106200000 13193000000 1683 2576 1575 9865;9866;9867;9868;9869;9870;9871;9872;9873;9874 11881;11882;11883;11884;11885;11886;11887;11888 11888 2812 8 AQSLLSTDREASIDILHSIVK Unmodified 2295.2434 0.24342475 73 O00231;O00231-2 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 71.334 71.466 4 3.562E-19 24649 20211116_3446_TMUAki_TMT10x_S_F7 149.18 115.48 42672000 68520000 251450 70494000 43552000 58386000 45105000 34907000 34876000 36296000 47324000 39734000 63944000 3784500 71595000 41814000 59699000 45354000 36717000 36369000 35391000 45266000 6 6 6 6 6 6 6 6 6 6 6 22263000 34886000 79897 34844000 22750000 37903000 22342000 17942000 18215000 18353000 24046000 20729000 32552000 1927000 35595000 21809000 37976000 22556000 19262000 18919000 17907000 23015000 3 3 3 3 3 3 3 3 3 3 3 20410000 33634000 171550 35651000 20802000 20482000 22763000 16965000 16660000 17943000 23278000 19005000 31392000 1857500 36000000 20005000 21723000 22798000 17456000 17451000 17484000 22251000 3 3 3 3 3 3 3 3 3 3 3 6337900000 3515000000 2822900000 1684 73 1576 9875;9876;9877;9878 11889;11890;11891;11892;11893;11894 11892 6 AQSLLSTDREASIDILHSIVKR Unmodified 2451.3445 0.34453578 73 O00231;O00231-2 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 0 0 0 2 By MS/MS By MS/MS 4.5 3.2 2 1 1 2 3 3 64.437 64.492 5 2.4516E-68 19948 20211116_3428_TMUAki_TMT10x_P_F1 252.55 230.68 20018000 32599000 179760 29036000 25535000 30613000 21824000 20493000 20162000 21604000 23975000 18640000 30405000 1829700 29897000 24397000 30862000 22280000 21380000 20719000 21054000 23010000 5 5 3 5 5 5 5 5 5 5 5 7440500 11904000 110750 11403000 7524900 15796000 8825600 8570100 7528700 8397600 8565700 6928200 11106000 665250 11734000 7251000 15659000 8844000 9073000 7752700 8208600 8230900 2 2 1 2 2 2 2 2 2 2 2 12578000 20695000 69007 17633000 18010000 14817000 12999000 11923000 12633000 13207000 15410000 11711000 19300000 1164400 18163000 17146000 15203000 13436000 12307000 12966000 12846000 14779000 3 3 2 3 3 3 3 3 3 3 3 6768200000 3012600000 3755600000 1685 73 1577 9879;9880;9881;9882;9883;9884 11895;11896;11897;11898;11899 11895 5 AQSSQDAVSSMNLFDLGGQYLR Oxidation (M) 2402.1172 0.11723796 3124 Q9UHX1-6;Q9UHX1-5;Q9UHX1-4;Q9UHX1-2;Q9UHX1;Q9UHX1-3 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 0 0 1 0 By MS/MS By MS/MS 6.25 0.433 3 1 1 3 74.637 74.648 2;3 3.7741E-67 23938 20211116_3445_TMUAki_TMT10x_S_F6 224.75 207.81 11535000 20801000 210430 18714000 14664000 18720000 13464000 13826000 13904000 14717000 15434000 10741000 19402000 1157300 19239000 14041000 18960000 13734000 14331000 14180000 14337000 14842000 7 7 3 7 7 7 7 7 7 7 7 3581200 6521300 89501 6142600 3908100 8275200 4271500 3959100 4348000 4647300 4456200 3335000 6083600 371880 6325100 3760900 8201700 4316100 4263800 4423800 4510400 4295400 2 2 1 2 2 2 2 2 2 2 2 7953600 14280000 120930 12571000 10756000 10445000 9192500 9867100 9556300 10070000 10978000 7406300 13318000 785430 12914000 10280000 10758000 9417400 10067000 9756400 9826600 10546000 5 5 2 5 5 5 5 5 5 5 5 2263500000 828490000 1435000000 1686 3124 1578 9885;9886;9887;9888 11900;11901;11902;11903;11904;11905;11906;11907 11904 3146 8 AQSSQDAVSSMNLFDLGGQYLR Unmodified 2386.1223 0.12232334 3124 Q9UHX1-6;Q9UHX1-5;Q9UHX1-4;Q9UHX1-2;Q9UHX1;Q9UHX1-3 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 0 0 0 0 By matching By MS/MS 7 0 2 1 1 78.62 78.669 3 3.6074E-05 27712 20211116_3446_TMUAki_TMT10x_S_F7 72.676 61.237 8349300 14801000 0 13809000 10853000 8446500 11727000 7854900 6417500 7558600 9768200 7772900 13807000 590320 14077000 10420000 8922200 11685000 8007300 6880000 7394300 9319300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8349300 14801000 0 13809000 10853000 8446500 11727000 7854900 6417500 7558600 9768200 7772900 13807000 590320 14077000 10420000 8922200 11685000 8007300 6880000 7394300 9319300 1 1 0 1 1 1 1 1 1 1 1 1872700000 745250000 1127400000 1687 3124 1578 9889;9890 11908 11908 1 AQTEGINISEEALNHLGEIGTK Unmodified 2323.1656 0.16556836 3225 Q9Y265 RUVBL1 RuvB-like 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.2 1.25 1 2 3 2 2 6 4 69.504 69.42 3;4 1.834E-68 22792 20211116_3442_TMUAki_TMT10x_S_F4 251.13 236.52 73570000 125850000 778550 115720000 87598000 116270000 91758000 85688000 79274000 87460000 96798000 68505000 117400000 6778000 118770000 84129000 117730000 92470000 88718000 81816000 85345000 92835000 23 23 13 23 23 23 23 23 23 23 23 32137000 53274000 454970 49731000 34622000 66827000 41199000 36984000 34033000 37375000 41816000 29925000 49697000 3068000 51239000 33387000 66354000 41224000 39121000 35213000 36486000 40097000 10 10 7 10 10 10 10 10 10 10 10 41433000 72580000 323580 65986000 52976000 49441000 50559000 48705000 45241000 50085000 54982000 38579000 67700000 3710000 67535000 50743000 51371000 51246000 49598000 46603000 48859000 52738000 13 13 6 13 13 13 13 13 13 13 13 9918000000 5507600000 4410400000 1688 3225 1579 9891;9892;9893;9894;9895;9896;9897;9898;9899;9900 11909;11910;11911;11912;11913;11914;11915;11916;11917;11918;11919;11920;11921;11922;11923;11924;11925;11926;11927;11928;11929;11930;11931;11932 11923 24 AQTLPTSVVTITSESSPGKR Unmodified 2058.0957 0.095697884 1475 Q01082 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 3 3 2 4 50.861 50.812 3;4 5.1592E-88 16406 20211116_3439_TMUAki_TMT10x_S_F1 281.5 263.4 7873100 13044000 84259 14082000 10993000 13640000 8019300 13158000 13024000 11681000 11749000 7331000 12175000 734100 14286000 10468000 13912000 8444700 13358000 12986000 11469000 11374000 5 5 3 5 5 5 5 5 5 5 5 3589200 5660600 64124 5952400 7237600 10206000 4919500 5814900 5955500 5291200 5128600 3342400 5283000 408430 6115500 6885300 10036000 5143300 6118100 5984100 5189300 4973000 2 2 2 2 2 2 2 2 2 2 2 4284000 7383100 20135 8130000 3755200 3434200 3099800 7343200 7068700 6389500 6620700 3988600 6892000 325670 8171000 3582800 3876000 3301400 7240200 7001600 6279600 6400600 3 3 1 3 3 3 3 3 3 3 3 2047500000 1271500000 776050000 1689 1475 1580 9901;9902;9903;9904;9905;9906 11933;11934;11935;11936;11937;11938;11939 11936 7 AQVADVVVSR Unmodified 1042.5771 0.57710791 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 4.1 1.37 2 1 3 2 2 5 5 37.743 37.739 2;3 9.4697E-11 9412 20211116_3442_TMUAki_TMT10x_S_F4 200.78 131.68 15117000 23285000 0 24246000 18339000 17278000 14540000 11743000 11727000 11199000 16600000 14074000 21731000 1085700 24563000 17475000 17907000 14860000 12203000 12227000 10960000 15863000 10 10 0 10 10 10 10 10 10 10 10 8228700 12199000 0 13152000 12011000 12315000 8122700 6329300 6294800 5953600 8894600 7661000 11387000 647550 13337000 11413000 12463000 8385900 6726100 6576100 5830100 8499800 3 3 0 3 3 3 3 3 3 3 3 6888800 11086000 0 11094000 6328600 4963300 6416800 5414000 5432600 5245200 7705600 6413200 10344000 438120 11226000 6062300 5444600 6473800 5476800 5650500 5129700 7363000 7 7 0 7 7 7 7 7 7 7 7 1686000000 1147000000 539060000 1690 1092 1581 9907;9908;9909;9910;9911;9912;9913;9914;9915;9916 11940;11941;11942;11943;11944;11945;11946;11947;11948;11949;11950;11951 11946 12 AQVAMSTLPVEDEESSESR Acetyl (Protein N-term);Oxidation (M) 2121.9372 0.93720791 1428 P78347;P78347-2;P78347-4;P78347-3;P78347-5 GTF2I General transcription factor II-I yes no 1 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 52.214 52.073 2 6.2239E-51 16863 20211116_3439_TMUAki_TMT10x_S_F1 172.99 157.45 1057900 1798600 13346 1934900 1779200 2174900 1193900 1549500 1766500 1404200 1740000 984840 1678800 78811 1967900 1690000 2186800 1259400 1602700 1771100 1377400 1679400 4 4 2 4 4 4 4 4 4 4 4 670080 1083500 0 1205100 1443800 1830600 941250 952500 1104800 845540 1036600 623660 1011400 34956 1230200 1369700 1806600 986090 1009600 1114400 830210 1002100 2 2 0 2 2 2 2 2 2 2 2 387800 715150 13346 729820 335360 344270 252680 597040 661660 558670 703410 361180 667370 43855 737730 320290 380180 273290 593120 656710 547210 677260 2 2 2 2 2 2 2 2 2 2 2 731370000 450100000 281280000 1691 1428 1582 9917;9918 11952;11953;11954;11955 11954 1919 4 AQVARPGGDTIFGK Unmodified 1415.7521 0.75211216 1120 P49773 HINT1 Histidine triad nucleotide-binding protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 5.5 2.69 2 2 2 2 4 4 42.618 42.783 3 2.5346E-23 11141 20211116_3436_TMUAki_TMT10x_P_F8 181.58 157.23 51116000 73796000 860570 108520000 170450000 140030000 67494000 83805000 97935000 66149000 87778000 47596000 68989000 6176200 108720000 160860000 139440000 74788000 87516000 97939000 65332000 84990000 11 11 8 11 11 11 11 11 11 11 11 43557000 62117000 805100 92909000 164450000 134480000 61679000 71402000 83495000 56118000 75340000 40558000 58077000 5521800 93229000 155110000 133020000 68613000 75323000 83698000 55438000 72930000 7 7 5 7 7 7 7 7 7 7 7 7558400 11679000 55476 15607000 5997600 5545100 5815200 12403000 14440000 10031000 12438000 7038100 10912000 654380 15493000 5749400 6423700 6175100 12194000 14241000 9894500 12060000 4 4 3 4 4 4 4 4 4 4 4 15392000000 10816000000 4575900000 1692 1120 1583 9919;9920;9921;9922;9923;9924;9925;9926 11956;11957;11958;11959;11960;11961;11962;11963;11964;11965;11966 11960 11 AQVFSCPACR Unmodified 1194.5274 0.5273973 2565 Q96T88;Q96T88-2 UHRF1 E3 ubiquitin-protein ligase UHRF1 no no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 32.848 33.264 2 0.012687 7390 20211116_3436_TMUAki_TMT10x_P_F8 63.184 55.244 146970 238400 0 284970 317700 288320 161390 182540 223790 176450 217530 136810 222620 10900 287470 300460 291140 173810 190750 224720 172580 210040 2 2 0 2 2 2 2 2 2 2 2 92256 139840 0 165340 256140 242340 116840 113470 136840 108730 125660 85881 130580 7725.2 168020 241950 239230 126420 121730 137940 106390 121560 1 1 0 1 1 1 1 1 1 1 1 54712 98555 0 119630 61558 45989 44552 69061 86953 67722 91874 50930 92041 3174.6 119450 58502 51911 47393 69012 86779 66196 88475 1 1 0 1 1 1 1 1 1 1 1 5937600 3084400 2853200 1693 2565 1584 9927;9928 11967;11968 11967 2 AQVIYTR Unmodified 849.47085 0.47085192 1372 P62851 RPS25 40S ribosomal protein S25 yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 33.157 33.143 2 0.012567 7942 20211116_3433_TMUAki_TMT10x_P_F5 95.909 64.906 2855000 4317200 19887 4278800 4725800 5083800 3764000 2566500 2949600 2553100 3439700 2658400 4028300 279610 4379800 4508200 5072800 3843100 2736100 3053800 2494000 3302900 2 2 1 2 2 2 2 2 2 2 2 2855000 4317200 19887 4278800 4725800 5083800 3764000 2566500 2949600 2553100 3439700 2658400 4028300 279610 4379800 4508200 5072800 3843100 2736100 3053800 2494000 3302900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 123090000 123090000 0 1694 1372 1585 9929;9930 11969 11969 1 AQVLPPLRDVR Unmodified 1262.7459 0.74590457 2897 Q9NPQ8;Q9NPQ8-4;Q9NPQ8-2 RIC8A Synembryn-A yes no 0 0 0 1 By MS/MS 1 0 1 1 41.528 41.365 3 0.036491 12556 20211116_3439_TMUAki_TMT10x_S_F1 50.95 19.578 660720 1066200 1805.5 1144300 649010 581490 579420 876120 848340 747970 994020 615210 995160 56297 1153400 620660 633710 599690 872070 856440 735790 954380 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 660720 1066200 1805.5 1144300 649010 581490 579420 876120 848340 747970 994020 615210 995160 56297 1153400 620660 633710 599690 872070 856440 735790 954380 1 1 1 1 1 1 1 1 1 1 1 74557000 0 74557000 1695 2897 1586 9931 11970 11970 1 AQYYLPDGSTIEIGPSR Unmodified 1865.9159 0.9159426 1298 P61163 ACTR1A Alpha-centractin yes yes 0 0 0 0 By MS/MS By MS/MS 5.71 1.03 2 4 4 4 8 6 67.218 67.374 2;3 5.308E-29 20881 20211116_3445_TMUAki_TMT10x_S_F6 186.69 144.3 154420000 253380000 732680 280940000 177590000 205360000 161880000 109870000 127350000 130580000 178880000 143780000 236530000 12806000 283530000 169860000 211720000 163960000 117150000 132890000 126670000 170970000 17 17 6 17 17 17 17 17 17 17 17 91428000 148700000 264210 166100000 118630000 158170000 110630000 65968000 76353000 75972000 104960000 85124000 138820000 7412000 168100000 113510000 159550000 111580000 72025000 80192000 73786000 100370000 10 10 3 10 10 10 10 10 10 10 10 62991000 104680000 468470 114850000 58954000 47182000 51250000 43903000 50993000 54605000 73924000 58652000 97713000 5394400 115430000 56349000 52166000 52380000 45123000 52702000 52889000 70602000 7 7 3 7 7 7 7 7 7 7 7 10738000000 6246000000 4491700000 1696 1298 1587 9932;9933;9934;9935;9936;9937;9938;9939;9940;9941;9942;9943;9944;9945 11971;11972;11973;11974;11975;11976;11977;11978;11979;11980;11981;11982;11983;11984;11985;11986;11987;11988;11989;11990;11991 11987 21 ARAGLPK Unmodified 711.43916 0.43915786 3393 yes no 0 0 0 1 By MS/MS By MS/MS 1.2 0.4 4 1 3 2 28.386 28.376 3 0.018967 5397 20211116_3428_TMUAki_TMT10x_P_F1 76.847 28.343 + 922160 1565600 1671.1 1354000 1184100 1477600 1181300 1004400 847370 1014100 1144900 858610 1460100 78214 1398100 1135100 1487000 1188000 1045300 887220 990000 1095200 5 5 4 5 5 5 5 5 5 5 5 617800 1004800 800.26 892660 787250 1124900 777050 700780 608390 669830 750330 575210 937160 50873 922050 754420 1122200 783500 732980 631350 655460 719430 3 3 2 3 3 3 3 3 3 3 3 304360 560820 870.82 461300 396830 352620 404250 303580 238990 344250 394520 283400 522930 27340 476010 380730 364830 404540 312360 255880 334530 375770 2 2 2 2 2 2 2 2 2 2 2 36262000 20938000 15324000 1697 3393 1588 9946;9947;9948;9949;9950 11992;11993;11994 11992 3 ARDDLITDLLNEAK Unmodified 1585.8312 0.83115034 951 P36543;P36543-2 ATP6V1E1 V-type proton ATPase subunit E 1 yes no 0 0 0 1 By MS/MS By MS/MS 4 0.894 2 1 2 2 3 76.441 76.384 3 6.2823E-31 27830 20211116_3441_TMUAki_TMT10x_S_F3 218.21 187.9 14172000 23129000 304460 22995000 15426000 19566000 17396000 13979000 13026000 14459000 17772000 13198000 21581000 1476100 23417000 14859000 20018000 17407000 14510000 13611000 14102000 16997000 5 5 4 5 5 5 5 5 5 5 5 5528300 8287400 132620 8068700 4958600 9660000 6541600 5471000 4993300 5409600 6510300 5148300 7732200 573950 8270600 4802300 9648700 6504700 5772100 5201400 5285800 6233200 2 2 2 2 2 2 2 2 2 2 2 8644100 14841000 171840 14927000 10468000 9905900 10855000 8508400 8032400 9049500 11262000 8049800 13849000 902160 15147000 10057000 10370000 10903000 8737500 8409600 8815900 10764000 3 3 2 3 3 3 3 3 3 3 3 1961900000 775780000 1186100000 1698 951 1589 9951;9952;9953;9954;9955 11995;11996;11997;11998;11999 11997 5 ARDHGLLIYHIPQVEPR Unmodified 2013.0908 0.090827698 3338 Q9Y676 MRPS18B 28S ribosomal protein S18b, mitochondrial yes yes 0 0 0 1 By matching By MS/MS 7.5 0.5 1 1 1 1 42.979 43.215 5 1.4077E-07 10869 20211116_3447_TMUAki_TMT10x_S_F8 110.26 99.405 279050 422670 0 485720 255870 215610 230300 388620 366090 340700 365750 259820 394630 22478 487020 244670 240190 239150 384960 366480 334720 352830 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 279050 422670 0 485720 255870 215610 230300 388620 366090 340700 365750 259820 394630 22478 487020 244670 240190 239150 384960 366480 334720 352830 1 1 0 1 1 1 1 1 1 1 1 148770000 100960000 47807000 1699 3338 1590 9956;9957 12000 12000 1 ARDINAVLIDMER Oxidation (M) 1530.7824 0.78242601 1242 P55265;P55265-5;P55265-4;P55265-3;P55265-2 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 1 1 By MS/MS By MS/MS 3.8 0.748 2 2 1 3 2 42.918 42.924 3 5.1033E-06 11861 20211116_3442_TMUAki_TMT10x_S_F4 105.99 90.726 6754900 10841000 110070 12633000 12359000 12431000 7964600 9178400 10390000 8662200 10337000 6290300 10123000 737050 12759000 11746000 12603000 8383700 9480700 10462000 8481200 9973100 6 6 4 6 6 6 6 6 6 6 6 4889900 7606400 91010 8783600 10575000 10718000 6354900 5918500 6727200 5684900 6989900 4553700 7102000 569490 8906500 10039000 10692000 6678200 6252700 6836800 5561800 6734800 4 4 3 4 4 4 4 4 4 4 4 1865000 3234900 19060 3849900 1784400 1713100 1609700 3260000 3662800 2977300 3346800 1736600 3020800 167560 3852100 1707500 1911800 1705500 3228000 3625200 2919400 3238300 2 2 1 2 2 2 2 2 2 2 2 1107900000 613200000 494720000 1700 1242 1591 9958;9959;9960;9961;9962 12001;12002;12003;12004;12005;12006;12007 12007 1686 7 ARDINAVLIDMER Unmodified 1514.7875 0.78751139 1242 P55265;P55265-5;P55265-4;P55265-3;P55265-2 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 56.659 56.612 3 6.9168E-19 17076 20211116_3431_TMUAki_TMT10x_P_F4 160.65 132.29 1344700 2126000 16794 2484500 1469200 1007000 1208500 1393800 1136700 1202000 1849700 1252200 1985100 128880 2487200 1403200 1125700 1237200 1391800 1184800 1181800 1762300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1344700 2126000 16794 2484500 1469200 1007000 1208500 1393800 1136700 1202000 1849700 1252200 1985100 128880 2487200 1403200 1125700 1237200 1391800 1184800 1181800 1762300 1 1 1 1 1 1 1 1 1 1 1 295420000 0 295420000 1701 1242 1591 9963;9964 12008;12009 12008 2 AREEFRPTIYSNVIK Unmodified 1821.9737 0.97373226 1707 Q14344 GNA13 Guanine nucleotide-binding protein subunit alpha-13 yes yes 0 0 0 2 By MS/MS By MS/MS 8 0 2 1 1 44.553 44.616 4 9.836E-07 11942 20211116_3436_TMUAki_TMT10x_P_F8 115.91 85.021 3155700 5864100 71504 5630700 6020400 6086600 3398000 5990100 5615300 5445300 5378000 2938800 5470900 368390 5767600 5711000 6170400 3652500 6078800 5607200 5340600 5195300 2 2 2 2 2 2 2 2 2 2 2 1755300 3312000 36487 3051300 4518700 4645200 2040000 3230500 2963800 3128700 2987200 1634600 3089500 218230 3155100 4272600 4602100 2227500 3352900 2975600 3059800 2880900 1 1 1 1 1 1 1 1 1 1 1 1400400 2552100 35017 2579400 1501700 1441500 1358000 2759500 2651500 2316700 2390800 1304200 2381500 150160 2612500 1438400 1568300 1425000 2725900 2631600 2280800 2314400 1 1 1 1 1 1 1 1 1 1 1 498060000 231690000 266370000 1702 1707 1592 9965;9966 12010;12011 12010 2 AREEIETHIAVR Unmodified 1422.7579 0.75792582 7 A1L020 MEX3A RNA-binding protein MEX3A yes yes 0 0 0 1 By MS/MS By MS/MS 3.11 0.737 2 4 3 4 5 32.213 32.141 3;4 3.7938E-12 9854 20211116_3441_TMUAki_TMT10x_S_F3 172.33 138.59 2142000 3495800 39079 3420500 2803500 2581600 2699700 2343400 2541000 2237700 2797200 1994700 3261600 215990 3482200 2687600 2676300 2739000 2391500 2601000 2189800 2690400 11 11 7 11 11 11 11 11 11 11 11 354490 551780 3335.9 602320 713230 735460 494780 416550 493970 376580 505750 330090 515060 37504 612890 678590 733860 513280 438420 502980 369440 487520 3 3 2 3 3 3 3 3 3 3 3 1787500 2944000 35743 2818100 2090300 1846100 2205000 1926900 2047000 1861200 2291400 1664600 2746600 178480 2869300 2009000 1942500 2225700 1953100 2098100 1820400 2202900 8 8 5 8 8 8 8 8 8 8 8 173710000 34623000 139080000 1703 7 1593 9967;9968;9969;9970;9971;9972;9973;9974;9975 12012;12013;12014;12015;12016;12017;12018;12019;12020;12021;12022;12023 12020 12 AREESWGPPR Unmodified 1183.5734 0.57341951 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 1 By MS/MS 3 0 1 1 30.616 30.363 3 0.00061837 9195 20211116_3441_TMUAki_TMT10x_S_F3 93.843 78.181 289320 481230 0 475130 320590 248810 349110 232530 286500 232010 417740 269370 449010 22271 481760 307970 267070 350690 237220 298860 226610 398920 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 289320 481230 0 475130 320590 248810 349110 232530 286500 232010 417740 269370 449010 22271 481760 307970 267070 350690 237220 298860 226610 398920 1 1 0 1 1 1 1 1 1 1 1 9197900 0 9197900 1704 1684 1594 9976 12024 12024 1 AREILVEESNVQR Unmodified 1541.8162 0.81616898 1273 P60510 PPP4C Serine/threonine-protein phosphatase 4 catalytic subunit yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 36.716 36.477 3 1.4409E-22 10085 20211116_3429_TMUAki_TMT10x_P_F2 199.38 159.44 1946000 3195600 53466 3479000 3641500 3291100 2298600 2062000 2272000 1763700 2777100 1812300 2982900 234910 3526300 3461100 3336700 2401000 2149600 2330500 1734900 2663300 3 3 3 3 3 3 3 3 3 3 3 1418200 2240200 47175 2396000 2984900 2736500 1731500 1463800 1558300 1314600 1933000 1320800 2090900 183490 2438400 2833400 2738100 1816500 1548100 1606200 1290100 1853100 2 2 2 2 2 2 2 2 2 2 2 527790 955440 6290.9 1083000 656570 554590 567170 598140 713700 449130 844120 491470 892000 51424 1088000 627680 598550 584510 601490 724280 444780 810250 1 1 1 1 1 1 1 1 1 1 1 196280000 108070000 88208000 1705 1273 1595 9977;9978 12025;12026;12027 12026 3 ARENPSEEAQNLVEFTDEEGYGR Unmodified 2639.1736 0.17356687 1572 Q12874 SF3A3 Splicing factor 3A subunit 3 yes yes 0 0 0 1 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 57.9 57.664 3 1.6857E-57 17446 20211116_3440_TMUAki_TMT10x_S_F2 235.92 228.38 30702000 56377000 332000 46145000 40012000 51424000 37713000 41975000 39079000 40280000 43366000 28587000 52567000 2604700 47877000 38311000 51849000 38416000 43104000 39848000 39409000 41701000 10 10 6 10 10 10 10 10 10 10 10 15508000 26304000 34184 22986000 17339000 32604000 20731000 16798000 15949000 16567000 19046000 14438000 24532000 1119200 23828000 16698000 32266000 20703000 17870000 16544000 16190000 18277000 4 4 2 4 4 4 4 4 4 4 4 15193000 30073000 297820 23158000 22673000 18820000 16982000 25177000 23130000 23713000 24320000 14149000 28035000 1485500 24049000 21613000 19583000 17713000 25234000 23304000 23220000 23424000 6 6 4 6 6 6 6 6 6 6 6 11464000000 6361400000 5102500000 1706 1572 1596 9979;9980;9981;9982;9983 12028;12029;12030;12031;12032;12033;12034;12035;12036;12037 12035 10 AREQAEAEVASLNR Unmodified 1542.775 0.77503245 526;527 P06753-2;P06753-3;P06753-5;P06753-4;P06753-6 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 1 By MS/MS By MS/MS 2 0.894 2 1 2 3 2 35.07 34.968 3 4.9843E-34 10924 20211116_3441_TMUAki_TMT10x_S_F3 236.4 205.83 1900300 2919100 21645 3618800 3044900 2524100 1874700 2059100 2262000 1828000 2629000 1769400 2726500 184390 3625900 2890900 2628500 1974700 2110100 2297200 1794900 2524700 5 5 4 5 5 5 5 5 5 5 5 821050 1184300 2132 1414600 2036200 1643100 957350 890410 983090 737630 1067400 764420 1106000 77720 1430300 1924800 1642900 1028300 938720 1002000 726700 1027100 2 2 1 2 2 2 2 2 2 2 2 1079200 1734800 19513 2204200 1008800 881010 917300 1168700 1278900 1090400 1561500 1005000 1620500 106670 2195700 966120 985600 946430 1171400 1295200 1068200 1497600 3 3 3 3 3 3 3 3 3 3 3 675150000 453360000 221790000 1707 526;527 1597 9984;9985;9986;9987;9988 12038;12039;12040;12041;12042 12042 5 AREQAEAEVASLNRR Unmodified 1698.8761 0.87614348 526;527 P06753-2;P06753-3;P06753-5;P06753-4;P06753-6 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 2 By MS/MS By MS/MS 4 0.816 2 2 2 4 2 32.896 32.806 3;4 7.392E-38 10096 20211116_3441_TMUAki_TMT10x_S_F3 252.82 174.74 3088100 4398300 54311 5348600 6162100 5083400 3235600 3099100 3441600 2586000 3672400 2875700 4107700 339490 5385400 5837600 5150400 3441500 3235700 3500400 2546700 3535500 5 5 3 5 5 5 5 5 5 5 5 2492500 3447000 39184 4222100 5555000 4641400 2644400 2473800 2769400 2040000 2814300 2321000 3219300 278190 4258800 5255100 4653800 2838400 2611600 2813500 2010200 2713500 3 3 2 3 3 3 3 3 3 3 3 595640 951340 15127 1126500 607130 441950 591210 625270 672200 545960 858120 554690 888360 61298 1126600 582500 496570 603030 624110 686900 536480 822040 2 2 1 2 2 2 2 2 2 2 2 841960000 692310000 149660000 1708 526;527 1598 9989;9990;9991;9992;9993;9994 12043;12044;12045;12046;12047 12047 5 AREQEAREPVLAQLR Unmodified 1764.9595 0.95947917 1995 Q6P2E9;Q6P2E9-2 EDC4 Enhancer of mRNA-decapping protein 4 yes no 0 0 0 2 By MS/MS 4 0 1 1 32.681 32.707 4 2.1842E-06 7489 20211116_3431_TMUAki_TMT10x_P_F4 108.96 82.187 433720 636920 1862.9 732440 861970 788510 463310 428980 551350 389670 568880 403850 594670 43692 741300 816590 791740 493520 453120 557680 382190 548240 1 1 1 1 1 1 1 1 1 1 1 433720 636920 1862.9 732440 861970 788510 463310 428980 551350 389670 568880 403850 594670 43692 741300 816590 791740 493520 453120 557680 382190 548240 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72755000 72755000 0 1709 1995 1599 9995 12048 12048 1 ARFEELCSDLFR Unmodified 1541.7297 0.72966216 596;701 P0DMV8;P0DMV9;P0DMV8-2;P17066;P48741 HSPA1A;HSPA1B;HSPA6;HSPA7 Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 no no 0 0 0 1 By MS/MS By MS/MS 4.67 1.49 2 2 4 4 4 2 9 9 59.975 60.027 2;3 8.0935E-23 17925 20211116_3445_TMUAki_TMT10x_S_F6 254.53 218.11 119310000 195220000 807760 194580000 158690000 193600000 142500000 145500000 125680000 140610000 157610000 111090000 182160000 8843800 198540000 151730000 196210000 144870000 150210000 129730000 137530000 151050000 23 23 12 23 23 23 23 23 23 23 23 65325000 106760000 426850 106030000 81522000 131230000 79157000 81996000 69849000 79774000 86759000 60825000 99616000 4559000 108600000 78112000 131030000 80128000 85786000 72067000 78003000 83170000 12 12 7 12 12 12 12 12 12 12 12 53987000 88463000 380910 88553000 77172000 62374000 63341000 63500000 55830000 60834000 70850000 50263000 82546000 4284800 89940000 73615000 65183000 64740000 64426000 57659000 59524000 67882000 11 11 5 11 11 11 11 11 11 11 11 36287000000 18113000000 18173000000 1710 596;701 1600 9996;9997;9998;9999;10000;10001;10002;10003;10004;10005;10006;10007;10008;10009;10010;10011;10012;10013 12049;12050;12051;12052;12053;12054;12055;12056;12057;12058;12059;12060;12061;12062;12063;12064;12065;12066;12067;12068;12069;12070;12071;12072 12071 24 ARFEELNADLFR Unmodified 1479.747 0.74702678 615 P11142;P11142-2;P54652 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 5.24 1.86 3 4 4 4 8 13 18 20 34 46.178 46.248 2;3 1.2715E-24 17647 20211116_3442_TMUAki_TMT10x_S_F4 252.37 198.77 149880000 243150000 378350 246170000 191870000 230740000 165400000 183530000 168430000 162850000 187500000 139540000 226900000 11417000 250690000 183210000 234960000 169250000 188360000 171890000 159900000 180290000 48 48 15 48 48 48 48 48 48 48 48 78081000 125450000 250260 126820000 100850000 158100000 94893000 95117000 90350000 87582000 97917000 72694000 117070000 5903500 129750000 96492000 157710000 96425000 99661000 92383000 85848000 94222000 18 18 6 18 18 18 18 18 18 18 18 71795000 117700000 128090 119350000 91020000 72647000 70509000 88410000 78077000 75273000 89585000 66842000 109830000 5513500 120940000 86714000 77243000 72827000 88701000 79507000 74057000 86063000 30 30 9 30 30 30 30 30 30 30 30 168060000000 87070000000 80990000000 1711 615 1601 10014;10015;10016;10017;10018;10019;10020;10021;10022;10023;10024;10025;10026;10027;10028;10029;10030;10031;10032;10033;10034;10035;10036;10037;10038;10039;10040;10041;10042;10043;10044;10045;10046;10047;10048;10049;10050;10051;10052;10053;10054;10055;10056;10057;10058;10059;10060;10061;10062;10063;10064;10065;10066;10067 12073;12074;12075;12076;12077;12078;12079;12080;12081;12082;12083;12084;12085;12086;12087;12088;12089;12090;12091;12092;12093;12094;12095;12096;12097;12098;12099;12100;12101;12102;12103;12104;12105;12106;12107;12108;12109;12110;12111;12112;12113;12114;12115;12116;12117;12118;12119;12120;12121;12122;12123;12124;12125;12126;12127;12128;12129;12130;12131 12100 59 ARLEIEPEWAYGK Unmodified 1560.7936 0.79364262 1472 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 0 0 0 1 By MS/MS 5 0 1 1 56.717 56.867 3 1.2245E-08 16321 20211116_3444_TMUAki_TMT10x_S_F5 118.51 99.221 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1712 1472 1603 10068 12132 12132 1 ARLEIEPEWAYGKK Unmodified 1688.8886 0.88860564 1472 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 0 0 0 2 By MS/MS By MS/MS 7 0 2 1 1 50.696 51.279 4 3.7793E-06 15793 20211116_3435_TMUAki_TMT10x_P_F7 111.12 87.316 30466000 50344000 797670 62732000 58743000 56377000 43172000 34893000 27958000 31693000 41824000 28372000 47023000 3665300 63027000 55983000 57342000 44135000 36465000 29600000 31085000 39917000 3 3 3 3 3 3 3 3 3 3 3 20779000 32445000 551310 40749000 46569000 48356000 33244000 23981000 18665000 21486000 29011000 19351000 30305000 2597700 41098000 44351000 48245000 33967000 25538000 19994000 21087000 27666000 2 2 2 2 2 2 2 2 2 2 2 9687000 17900000 246360 21983000 12174000 8020300 9928100 10912000 9292600 10207000 12813000 9021400 16717000 1067500 21929000 11631000 9096800 10168000 10928000 9606400 9998100 12251000 1 1 1 1 1 1 1 1 1 1 1 1303000000 716730000 586260000 1713 1472 1604 10069;10070 12133;12134;12135 12133 3 ARLELNENPDTLHQDIQEVR Unmodified 2389.1986 0.19859983 1934 Q5SYC1 CLVS2 Clavesin-2 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.707 1 2 1 1 3 46.304 46.252 4 3.8839E-32 15552 20211116_3441_TMUAki_TMT10x_S_F3 190.63 159.27 8050400 13234000 125160 15765000 10795000 9275100 8985400 8385800 8939900 8099000 10997000 7495600 12358000 689890 15807000 10304000 9829200 9207500 8562400 9169800 7921700 10545000 6 6 4 6 6 6 6 6 6 6 6 2145800 3305600 35257 4236100 4370500 4273100 2582000 2448600 2445800 2071600 2942000 1997900 3088000 209220 4256400 4145700 4309900 2708300 2570400 2511700 2038700 2822600 2 2 1 2 2 2 2 2 2 2 2 5904600 9928100 89908 11529000 6424300 5002000 6403400 5937200 6494200 6027400 8055100 5497600 9270000 480670 11551000 6158300 5519300 6499200 5992000 6658100 5883000 7722100 4 4 3 4 4 4 4 4 4 4 4 862560000 224260000 638300000 1714 1934 1605 10071;10072;10073;10074 12136;12137;12138;12139;12140;12141 12140 6 ARLPPDVLR Unmodified 1035.6189 0.61891314 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 1 By MS/MS By MS/MS 6.64 2.67 2 1 8 6 5 35.556 35.843 3 0.0019437 4146 20211116_3447_TMUAki_TMT10x_S_F8 76.282 33 2489800 3947900 8955.8 4242000 3822200 3914900 2833500 2625700 2958400 2726500 3313400 2318200 3684900 227330 4301900 3640200 3979500 2929700 2737700 3016800 2658700 3185300 10 10 6 10 10 10 10 10 10 10 10 1578500 2482800 8273.8 2668500 2979600 3107200 1876700 1662400 1822900 1681700 2075700 1469700 2317500 152480 2715800 2829300 3105900 1959600 1763700 1865800 1641700 1994500 7 7 4 7 7 7 7 7 7 7 7 911320 1465000 682.03 1573500 842640 807700 956740 963280 1135500 1044800 1237700 848530 1367400 74842 1586200 810850 873570 970030 973980 1150900 1017000 1190800 3 3 2 3 3 3 3 3 3 3 3 178680000 123740000 54935000 1715 1433 1606 10075;10076;10077;10078;10079;10080;10081;10082;10083;10084;10085 12142;12143;12144;12145;12146;12147;12148;12149;12150;12151;12152;12153 12152 12 ARPAEVGGMQLR Oxidation (M) 1299.6718 0.67175335 908 P33316;P33316-2 DUT Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial yes no 0 0 1 1 By MS/MS 5 0 2 2 28.24 28.167 2;3 0.00027293 5942 20211116_3433_TMUAki_TMT10x_P_F5 86.592 52.386 245290 393910 2608.4 327530 423150 527040 285580 360800 320260 294460 345710 228400 367320 22691 341810 402440 520870 297940 373240 325200 290320 332710 2 2 1 2 2 2 2 2 2 2 2 245290 393910 2608.4 327530 423150 527040 285580 360800 320260 294460 345710 228400 367320 22691 341810 402440 520870 297940 373240 325200 290320 332710 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 104710000 104710000 0 1716 908 1607 10086;10087 12154;12155 12154 1118 2 ARPATDSFDDYPPR Unmodified 1606.7376 0.73758431 788 P23588;P23588-2 EIF4B Eukaryotic translation initiation factor 4B yes no 0 0 0 1 By MS/MS By MS/MS 3.27 0.854 4 3 8 5 10 33.551 33.501 3 5.013E-19 8411 20211116_3431_TMUAki_TMT10x_P_F4 168.67 156.14 4541100 7147600 13926 8926300 10415000 8968800 5767000 6065800 7344700 5252800 7160300 4228100 6676100 439520 8981300 9868500 9068900 6141600 6289500 7396400 5163600 6913000 12 12 5 12 12 12 12 12 12 12 12 2884500 4549400 4763.2 5685000 9035200 7718100 4346100 4009200 5012100 3454800 4672900 2685700 4249300 320760 5749800 8545200 7654000 4674200 4246800 5057800 3397000 4518300 4 4 2 4 4 4 4 4 4 4 4 1656600 2598200 9162.8 3241300 1380100 1250600 1420900 2056700 2332600 1798000 2487300 1542300 2426800 118750 3231400 1323400 1415000 1467400 2042600 2338600 1766600 2394700 8 8 3 8 8 8 8 8 8 8 8 740830000 484580000 256250000 1717 788 1608 10088;10089;10090;10091;10092;10093;10094;10095;10096;10097;10098;10099;10100;10101;10102 12156;12157;12158;12159;12160;12161;12162;12163;12164;12165;12166;12167;12168;12169;12170;12171 12158 16 ARPEDVISEGR Unmodified 1227.6208 0.62076364 800 P25325;P25325-2 MPST 3-mercaptopyruvate sulfurtransferase yes no 0 0 0 1 By MS/MS 2 0 1 1 32.162 31.938 3 7.9747E-07 8248 20211116_3429_TMUAki_TMT10x_P_F2 132.79 107.95 383910 604780 4416.6 650730 871550 659820 444910 338630 383930 308650 503740 357490 564500 42774 660740 825220 664400 471710 359610 397500 302680 482230 1 1 1 1 1 1 1 1 1 1 1 383910 604780 4416.6 650730 871550 659820 444910 338630 383930 308650 503740 357490 564500 42774 660740 825220 664400 471710 359610 397500 302680 482230 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 49360000 49360000 0 1718 800 1609 10103 12172 12172 1 ARPEYMLPVHFYGR Oxidation (M) 1750.8613 0.86134503 620 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 1 1 By MS/MS By MS/MS 3.43 2.92 2 3 2 4 3 44.799 44.736 3;4 4.1366E-09 11769 20211116_3428_TMUAki_TMT10x_P_F1 124.51 111.56 3604800 5568400 34645 5977500 5207400 5497400 3886200 4629700 4784400 4275500 4633900 3356500 5197400 321970 6062000 4960000 5610500 4038900 4740300 4822700 4190300 4474800 7 7 4 7 7 7 7 7 7 7 7 1669100 2594700 4944 2814200 3291600 3863100 2099300 2122900 2345300 2023000 2118000 1553900 2421900 137560 2871200 3124600 3831700 2199400 2243200 2367100 1979900 2050200 3 3 1 3 3 3 3 3 3 3 3 1935700 2973700 29701 3163300 1915900 1634300 1786900 2506800 2439100 2252500 2515900 1802600 2775400 184410 3190800 1835400 1778800 1839400 2497100 2455600 2210400 2424600 4 4 3 4 4 4 4 4 4 4 4 2344600000 1598300000 746270000 1719 620 1610 10104;10105;10106;10107;10108;10109;10110 12173;12174;12175;12176;12177;12178;12179;12180 12173 631 8 ARPEYMLPVHFYGR Unmodified 1734.8664 0.86643041 620 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 1 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 49.53 49.296 4 2.8033E-09 16868 20211116_3441_TMUAki_TMT10x_S_F3 131.35 115.81 2587500 3799100 31147 4612500 3608800 3940300 2945700 2248600 2005700 2058900 3047400 2409400 3548000 257850 4638000 3445500 4017600 2993500 2365900 2118500 2018600 2907400 4 4 4 4 4 4 4 4 4 4 4 2026100 2922600 30663 3497800 2982300 3531000 2437600 1763300 1565600 1602200 2357300 1886800 2729200 209950 3528200 2847800 3555400 2474000 1877200 1658900 1571400 2249500 3 3 3 3 3 3 3 3 3 3 3 561340 876510 483.76 1114700 626490 409260 508100 485350 440110 456750 690090 522670 818770 47903 1109800 597760 462150 519480 488780 459580 447260 657970 1 1 1 1 1 1 1 1 1 1 1 1174400000 871370000 303050000 1720 620 1610 10111;10112;10113 12181;12182;12183;12184 12184 4 ARPFPDGLAEDIDKGEVSAR Unmodified 2142.0705 0.070545766 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 2 By MS/MS By MS/MS 4.26 1.29 2 4 4 5 4 10 9 51.799 51.825 3;4 5.8484E-71 15503 20211116_3442_TMUAki_TMT10x_S_F4 279.1 251.18 269680000 448330000 5302800 475880000 325460000 415390000 284320000 286260000 277790000 277650000 332800000 251130000 418440000 26915000 482620000 311270000 424000000 290350000 297310000 284840000 271520000 319340000 43 43 29 43 43 43 43 43 43 43 43 155170000 247250000 3968600 267680000 216900000 321180000 193440000 165440000 156550000 160880000 187060000 144510000 230790000 16551000 272430000 207570000 320400000 196300000 175930000 161960000 157310000 179500000 22 22 14 22 22 22 22 22 22 22 22 114510000 201080000 1334300 208200000 108550000 94213000 90882000 120820000 121240000 116770000 145740000 106630000 187650000 10364000 210190000 103700000 103610000 94049000 121370000 122880000 114210000 139830000 21 21 15 21 21 21 21 21 21 21 21 83224000000 42346000000 40878000000 1721 653 1611 10114;10115;10116;10117;10118;10119;10120;10121;10122;10123;10124;10125;10126;10127;10128;10129;10130;10131;10132 12185;12186;12187;12188;12189;12190;12191;12192;12193;12194;12195;12196;12197;12198;12199;12200;12201;12202;12203;12204;12205;12206;12207;12208;12209;12210;12211;12212;12213;12214;12215;12216;12217;12218;12219;12220;12221;12222;12223;12224;12225;12226;12227 12217 43 ARPNTVISQEPFVPK Unmodified 1681.9152 0.91515474 3175 Q9ULW0;Q9ULW0-2 TPX2 Targeting protein for Xklp2 yes no 0 0 0 1 By MS/MS 8 0 1 1 46.044 46.18 3 8.9879E-05 12580 20211116_3436_TMUAki_TMT10x_P_F8 87.519 58.028 1289400 2208200 39509 2485100 2834100 3335400 1982600 2259100 2295400 1813800 2176700 1200900 2061500 165360 2528400 2698500 3321300 2065200 2337900 2317300 1789800 2103500 1 1 1 1 1 1 1 1 1 1 1 1289400 2208200 39509 2485100 2834100 3335400 1982600 2259100 2295400 1813800 2176700 1200900 2061500 165360 2528400 2698500 3321300 2065200 2337900 2317300 1789800 2103500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 285890000 285890000 0 1722 3175 1612 10133 12228 12228 1 ARPNTVISQEPFVPKK Unmodified 1810.0101 0.010117761 3175 Q9ULW0;Q9ULW0-2 TPX2 Targeting protein for Xklp2 yes no 0 0 0 2 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 42.722 42.639 4 2.6462E-05 11254 20211116_3440_TMUAki_TMT10x_S_F2 96.096 85.041 9027600 13840000 109220 19722000 32761000 25060000 14840000 15028000 17923000 13154000 16673000 8406100 12936000 1144200 19784000 30966000 24975000 16085000 15730000 18054000 12924000 16123000 4 4 3 4 4 4 4 4 4 4 4 7677800 11411000 105250 16629000 31835000 24088000 13938000 12642000 15238000 10908000 14240000 7149300 10667000 1034500 16707000 30079000 23822000 15114000 13379000 15410000 10725000 13768000 3 3 2 3 3 3 3 3 3 3 3 1349800 2429100 3966.3 3093700 925090 972410 901250 2386400 2684500 2245200 2433100 1256800 2269100 109660 3077400 886660 1153200 970620 2350700 2644100 2198600 2355000 1 1 1 1 1 1 1 1 1 1 1 752320000 618480000 133840000 1723 3175 1613 10134;10135;10136 12229;12230;12231;12232 12232 4 ARPPGPPDLGAFR Unmodified 1349.7204 0.7204181 1139 P50548;P50548-2 ERF ETS domain-containing transcription factor ERF yes no 0 0 0 1 By MS/MS By matching 5.67 3.3 1 2 2 1 43.247 43.309 3 0.0023781 11328 20211116_3428_TMUAki_TMT10x_P_F1 67.102 42.72 1648300 2698500 37897 3024200 4160700 4003400 2538400 2159600 2128400 1805700 2384900 1535000 2519200 207160 3076800 3951000 3976600 2647000 2278200 2192300 1778100 2292700 2 2 2 2 2 2 2 2 2 2 2 1648300 2698500 37897 3024200 4160700 4003400 2538400 2159600 2128400 1805700 2384900 1535000 2519200 207160 3076800 3951000 3976600 2647000 2278200 2192300 1778100 2292700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 205420000 187630000 17782000 1724 1139 1614 10137;10138;10139 12233;12234 12233 2 ARQEFEERMEEESQSQGR Oxidation (M) 2240.9716 0.97163636 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 1 2 By MS/MS 2 0 1 1 27.875 27.639 4 9.3972E-05 6624 20211116_3429_TMUAki_TMT10x_P_F2 77.506 66.562 31625 37456 0 43989 58098 52794 29957 25685 26744 24425 41091 29446 34975 0 44546 55000 52630 31759 27445 27857 23907 39195 1 1 0 1 1 1 1 1 1 1 1 31625 37456 0 43989 58098 52794 29957 25685 26744 24425 41091 29446 34975 0 44546 55000 52630 31759 27445 27857 23907 39195 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3469900 3469900 0 1725 1723 1615 10140 12235 12235 2312 1 ARQEFEERMEEESQSQGR Unmodified 2224.9767 0.97672174 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 2 By MS/MS 2 0 1 1 34.729 34.506 4 6.5634E-31 9318 20211116_3429_TMUAki_TMT10x_P_F2 183.65 161.84 217800 401360 8438.4 471960 705140 524270 308850 289060 305460 243540 370820 202850 374770 32747 477270 666670 525580 333900 304410 313220 239730 355690 1 1 1 1 1 1 1 1 1 1 1 217800 401360 8438.4 471960 705140 524270 308850 289060 305460 243540 370820 202850 374770 32747 477270 666670 525580 333900 304410 313220 239730 355690 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26428000 26428000 0 1726 1723 1615 10141 12236 12236 1 ARQEQLELTLGR Unmodified 1412.7736 0.77357588 3206 Q9UPN3;Q9UPN3-5;Q9UPN3-2;Q9UPN3-4;Q9UPN3-3 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 0 0 0 1 By MS/MS By MS/MS 4.25 0.433 3 1 1 3 38.137 38.253 3 7.4965E-09 9932 20211116_3431_TMUAki_TMT10x_P_F4 142.38 105.2 1124300 1622100 0 1921500 2179300 1865700 1332500 1260300 1249000 1156200 1486700 1046700 1514700 93410 1938300 2067400 1890500 1393300 1308800 1282700 1133500 1426800 2 2 0 2 2 2 2 2 2 2 2 961060 1348600 0 1616900 2011900 1718300 1125600 1128000 1128700 1013500 1272100 894730 1259400 79973 1632000 1905900 1731000 1188200 1173200 1153200 994510 1222700 1 1 0 1 1 1 1 1 1 1 1 163200 273430 0 304680 167410 147450 206950 132320 120230 142760 214580 151950 255260 13437 306260 161500 159570 205170 135610 129450 139000 204070 1 1 0 1 1 1 1 1 1 1 1 89329000 45635000 43694000 1727 3206 1616 10142;10143;10144;10145 12237;12238 12237 2 ARQLTVQMMQNPQILAALQER 2 Oxidation (M) 2470.2784 0.27844683 1240 P55209;P55209-2 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 0 0 2 1 By MS/MS 1 0 1 1 52.326 52.326 3 5.0879E-05 14997 20211116_3428_TMUAki_TMT10x_P_F1 77.1 72.483 847170 1149400 1402 1903400 1442500 1647300 989390 969610 923470 839640 1045800 788810 1075300 79880 1884600 1371800 1678700 1025200 1016100 946690 825390 1005000 1 1 1 1 1 1 1 1 1 1 1 847170 1149400 1402 1903400 1442500 1647300 989390 969610 923470 839640 1045800 788810 1075300 79880 1884600 1371800 1678700 1025200 1016100 946690 825390 1005000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 291380000 291380000 0 1728 1240 1617 10146 12239 12239 1681;1682 1 ARQPPPGVMPK Oxidation (M) 1192.6387 0.63866231 12 A5YKK6;A5YKK6-3;A5YKK6-2;A5YKK6-4 CNOT1 CCR4-NOT transcription complex subunit 1 yes no 0 0 1 1 By MS/MS By MS/MS 1 0 2 1 1 28.609 28.65 3 0.017694 5515 20211116_3428_TMUAki_TMT10x_P_F1 59.04 43.176 93616 153720 3340.9 134900 127570 126390 108170 107510 82465 100550 139940 87173 143360 9066.4 138820 121880 128860 109940 110050 87058 98493 133210 2 2 1 2 2 2 2 2 2 2 2 47383 79153 3340.9 64350 74129 87501 52422 57380 41850 56070 74927 44143 73803 7416.6 67039 70735 87035 53982 59821 44211 54815 71255 1 1 1 1 1 1 1 1 1 1 1 46234 74565 0 70547 53438 38890 55748 50127 40615 44484 65009 43030 69562 1649.8 71780 51148 41823 55958 50230 42847 43678 61957 1 1 0 1 1 1 1 1 1 1 1 6091500 3580400 2511000 1729 12 1618 10147;10148 12240 12240 10 1 ARSEAAEAGNGAETMAAEAESAQTR Oxidation (M) 2494.099 0.099021716 249 O43823 AKAP8 A-kinase anchor protein 8 yes yes 0 0 1 1 By MS/MS By MS/MS 1 0 4 2 2 31.799 31.815 3;4 1.906E-29 8652 20211116_3439_TMUAki_TMT10x_S_F1 168.06 152.47 376350 584420 0 606450 474860 436140 423190 299320 401410 254570 476670 350390 545410 25046 614580 453830 451740 431280 309890 411990 250470 457500 4 4 0 4 4 4 4 4 4 4 4 76746 134020 0 152910 234250 213010 115420 93947 147340 70513 114600 71447 125130 2593.9 155560 221540 210620 124280 100830 147340 69832 111560 2 2 0 2 2 2 2 2 2 2 2 299600 450390 0 453540 240610 223130 307770 205370 254070 184050 362080 278950 420280 22452 459020 232290 241120 307010 209070 264650 180630 345940 2 2 0 2 2 2 2 2 2 2 2 80502000 46964000 33537000 1730 249 1619 10149;10150;10151;10152 12241;12242;12243 12243 198 3 ARVEVERDNLAEDIMR Oxidation (M) 1930.9531 0.95307317 561 P08670 VIM Vimentin yes yes 0 0 1 2 By MS/MS By MS/MS 2 0.894 2 1 2 3 2 36.272 36.163 4 1.5503E-07 10003 20211116_3429_TMUAki_TMT10x_P_F2 112.67 85.024 966900 1463100 8655.4 1882100 1687200 1515800 1018700 1076500 1215100 884460 1216800 900270 1366800 88634 1885000 1600900 1557000 1074400 1110900 1227600 871720 1173800 4 4 2 4 4 4 4 4 4 4 4 743060 1130400 8655.4 1466600 1503000 1366200 860160 782600 889290 648710 905070 691870 1056000 72896 1471000 1425000 1384900 907010 821140 903980 639080 872600 3 3 2 3 3 3 3 3 3 3 3 223840 332680 0 415450 184250 149620 158590 293890 325830 235740 311740 208400 310740 15737 414010 175880 172060 167380 289780 323660 232640 301160 1 1 0 1 1 1 1 1 1 1 1 502870000 360880000 141990000 1731 561 1620 10153;10154;10155;10156;10157 12244;12245;12246 12245 523 3 ARVEVERDNLAEDIMR Unmodified 1914.9582 0.95815855 561 P08670 VIM Vimentin yes yes 0 0 0 2 By MS/MS By MS/MS 3 0 2 1 1 43.437 43.295 4 7.6957E-15 14452 20211116_3441_TMUAki_TMT10x_S_F3 147.49 120.76 1870000 2988200 26066 3600000 3038400 2938000 2200000 1984800 1857500 1795600 2519100 1741100 2790600 167200 3619400 2892000 3012400 2264800 2060400 1928200 1761500 2409600 4 4 2 4 4 4 4 4 4 4 4 1254200 1913400 26066 2317900 2460000 2480700 1683500 1310100 1359000 1250200 1649500 1167900 1786900 132670 2338500 2340100 2490800 1738200 1389400 1407000 1223500 1582200 3 3 2 3 3 3 3 3 3 3 3 615820 1074800 0 1282100 578380 457260 516520 674630 498550 545380 869600 573260 1003700 34521 1281000 551980 521590 526610 671080 521140 537970 827380 1 1 0 1 1 1 1 1 1 1 1 138300000 63060000 75245000 1732 561 1620 10158;10159 12247;12248;12249;12250 12250 4 ARYPHLGQKPGGSDFLR Unmodified 1897.9911 0.99111365 1256 P56211;P56211-2 ARPP19 cAMP-regulated phosphoprotein 19 yes no 0 0 0 2 By MS/MS By MS/MS 2.2 0.748 1 2 2 2 3 38.226 38.088 4;5 1.8594E-21 12311 20211116_3441_TMUAki_TMT10x_S_F3 167.92 148.71 7333900 12548000 47884 14719000 8484900 6843000 6268500 9658000 10158000 8917100 10495000 6828800 11717000 656700 14745000 8082100 7520300 6594700 9655400 10176000 8739400 10114000 9 9 7 9 9 9 9 9 9 9 9 838300 1342800 0 1676000 1933800 1779100 1163200 1111800 904520 842950 1131200 780460 1254200 74771 1687800 1834200 1791100 1212200 1156000 939560 834350 1084200 1 1 0 1 1 1 1 1 1 1 1 6495600 11205000 47884 13043000 6551100 5063900 5105200 8546200 9253500 8074200 9364100 6048400 10463000 581930 13057000 6247900 5729200 5382500 8499300 9236200 7905100 9029800 8 8 7 8 8 8 8 8 8 8 8 378740000 131140000 247600000 1733 1256 1621 10160;10161;10162;10163;10164 12251;12252;12253;12254;12255;12256;12257;12258;12259 12254 9 ASAAFSSVGSVITK Unmodified 1323.7034 0.70343063 1243 P55327-4;P55327-2;P55327;P55327-5;P55327-6;P55327-7;P55327-3 TPD52 Tumor protein D52 yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 59.533 59.301 2;3 1.1958E-13 17811 20211116_3428_TMUAki_TMT10x_P_F1 134.18 113.28 3040600 4983200 0 5322100 3018600 2744300 2603900 3578700 3456800 3566100 4102300 2831000 4651200 240060 5366900 2883200 2973500 2689400 3596100 3502300 3483300 3937400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3040600 4983200 0 5322100 3018600 2744300 2603900 3578700 3456800 3566100 4102300 2831000 4651200 240060 5366900 2883200 2973500 2689400 3596100 3502300 3483300 3937400 1 1 0 1 1 1 1 1 1 1 1 368730000 0 368730000 1734 1243 1622 10165;10166;10167 12260;12261;12262 12260 3 ASADLMSYCEEHAR Oxidation (M) 1654.6716 0.67155493 3078 Q9UBI6 GNG12 Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12 yes yes 0 0 1 0 By MS/MS 2 0 1 1 33.389 33.167 3 0.022306 8806 20211116_3429_TMUAki_TMT10x_P_F2 43.69 37.795 660420 1035600 0 1137100 1726200 1340400 787340 655670 766610 618460 905210 614920 966740 69503 1155900 1631500 1337600 847080 700080 785720 605560 868940 1 1 0 1 1 1 1 1 1 1 1 660420 1035600 0 1137100 1726200 1340400 787340 655670 766610 618460 905210 614920 966740 69503 1155900 1631500 1337600 847080 700080 785720 605560 868940 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34153000 34153000 0 1735 3078 1623 10168 12263 12263 3127 1 ASAELALGENSEVLK Unmodified 1529.7937 0.7937022 471 P00505 GOT2 Aspartate aminotransferase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3.17 1.07 1 2 4 4 1 7 5 58.443 58.316 2;3 1.1447E-154 19452 20211116_3430_TMUAki_TMT10x_P_F3 421.65 352.99 82502000 131740000 1075400 158930000 124470000 125580000 91316000 80396000 77375000 80356000 105160000 76823000 123030000 8175800 159710000 118570000 128970000 93928000 84020000 80312000 78482000 100590000 17 17 13 17 17 17 17 17 17 17 17 51326000 80669000 629640 95392000 88969000 104500000 67064000 50464000 48880000 50483000 64250000 47792000 75328000 5115100 96412000 84778000 104680000 68608000 54036000 51068000 49304000 61504000 11 11 7 11 11 11 11 11 11 11 11 31176000 51075000 445760 63535000 35505000 21076000 24253000 29932000 28496000 29873000 40913000 29031000 47705000 3060700 63301000 33788000 24289000 25320000 29984000 29244000 29178000 39083000 6 6 6 6 6 6 6 6 6 6 6 12425000000 7321000000 5103600000 1736 471 1624 10169;10170;10171;10172;10173;10174;10175;10176;10177;10178;10179;10180 12264;12265;12266;12267;12268;12269;12270;12271;12272;12273;12274;12275;12276;12277;12278;12279;12280 12269 17 ASAELIEEEVAK Unmodified 1287.6558 0.65581174 637 P12081;P12081-4;P12081-3;P12081-2 HARS Histidine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 1 0 3 1 2 59.077 58.877 2;3 8.7251E-09 19728 20211116_3439_TMUAki_TMT10x_S_F1 149.31 112.78 8439800 14655000 124100 14869000 12023000 13058000 9527800 13645000 12664000 11499000 12973000 7859200 13675000 865570 15127000 11473000 13428000 9892100 13780000 12757000 11319000 12505000 3 3 3 3 3 3 3 3 3 3 3 2963000 5117700 34477 5264800 6159900 7987600 4301900 5042400 4620800 4104400 4606300 2759100 4775900 322560 5401200 5861800 7903100 4470600 5247300 4686400 4047200 4443900 1 1 1 1 1 1 1 1 1 1 1 5476800 9537000 89622 9604400 5863400 5070700 5226000 8602900 8043500 7394500 8366600 5100100 8899300 543000 9725600 5611500 5524700 5421500 8532400 8071100 7271600 8060900 2 2 2 2 2 2 2 2 2 2 2 712650000 232350000 480290000 1737 637 1625 10181;10182;10183 12281;12282;12283 12282 3 ASAETVDPASLWEY Unmodified 1537.6937 0.69365381 1859 Q16658 FSCN1 Fascin yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.926 1 2 8 2 1 10 4 58.015 57.985 2 6.0871E-14 27972 20211116_3430_TMUAki_TMT10x_P_F3 154.56 140.89 10816000 17275000 4200.4 17382000 11597000 12781000 13203000 6886800 6132000 8261800 11700000 10070000 16120000 726070 17656000 11148000 13171000 13090000 7340700 6745300 8012300 11114000 7 7 3 7 7 7 7 7 7 7 7 5351300 7786100 4200.4 7866500 5102200 7541300 6497400 3177500 2942400 3885600 5528000 4982000 7265500 363590 8014600 4922300 7604500 6407600 3472100 3240700 3765700 5252600 5 5 3 5 5 5 5 5 5 5 5 5465100 9489000 0 9515700 6494500 5239400 6705600 3709300 3189600 4376200 6171700 5087700 8854400 362480 9641800 6225700 5566900 6681900 3868600 3504600 4246500 5861300 2 2 0 2 2 2 2 2 2 2 2 7956600000 4117500000 3839100000 1738 1859 1626 10184;10185;10186;10187;10188;10189;10190;10191;10192;10193;10194;10195;10196;10197 12284;12285;12286;12287;12288;12289;12290;12291;12292;12293;12294 12287 11 ASAFALQEQPVVNAVIDDTTK Unmodified 2216.1325 0.13247732 960 P36957;P36957-2 DLST Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial yes no 0 0 0 0 By MS/MS 5 0 1 1 77.879 77.899 3 1.3675E-05 26114 20211116_3433_TMUAki_TMT10x_P_F5 79.635 59.254 2838900 4425100 0 4578500 2505500 3963900 2823900 2064300 2029600 2340600 2926500 2643300 4129700 226880 4650800 2410100 4033400 2823100 2203000 2131300 2274600 2795300 1 1 0 1 1 1 1 1 1 1 1 2838900 4425100 0 4578500 2505500 3963900 2823900 2064300 2029600 2340600 2926500 2643300 4129700 226880 4650800 2410100 4033400 2823100 2203000 2131300 2274600 2795300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 694990000 694990000 0 1739 960 1627 10198 12295 12295 1 ASAGPQPLLVQSCK Unmodified 1454.7551 0.75514863 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 46.617 46.736 3 4.6783E-08 12266 20211116_3447_TMUAki_TMT10x_S_F8 106.14 87.872 1324000 2206500 31508 2361100 4006100 3953200 2351100 2745400 2886100 2421900 2275200 1233000 2059500 176700 2421600 3801600 3901900 2487900 2842600 2891000 2378700 2213700 1 1 1 1 1 1 1 1 1 1 1 1324000 2206500 31508 2361100 4006100 3953200 2351100 2745400 2886100 2421900 2275200 1233000 2059500 176700 2421600 3801600 3901900 2487900 2842600 2891000 2378700 2213700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 223390000 223390000 0 1740 3293 1628 10199;10200;10201 12296;12297;12298 12298 3 ASALEQFVNSVR Acetyl (Protein N-term) 1361.6939 0.69392858 3199 Q9UNS2 COPS3 COP9 signalosome complex subunit 3 yes yes 1 0 0 0 By MS/MS By MS/MS 4.38 1.32 1 1 2 2 2 4 4 80.991 80.985 2 1.6655E-48 26509 20211116_3445_TMUAki_TMT10x_S_F6 215.93 182.42 6634300 10438000 22946 11023000 7476300 9977700 8038400 6757200 6335600 6356500 8135000 6176800 9741800 358310 11188000 7179800 10157000 8071600 7020800 6583800 6224600 7791900 8 8 3 8 8 8 8 8 8 8 8 4026900 6113100 4512.5 6371800 4178700 7059000 4773700 4181500 3942300 3706500 4707500 3749300 5705100 150440 6492300 4019900 7084200 4785300 4382400 4074200 3639500 4517500 4 4 1 4 4 4 4 4 4 4 4 2607300 4324800 18433 4651200 3297700 2918600 3264800 2575800 2393300 2650000 3427500 2427500 4036700 207860 4696000 3160000 3072500 3286300 2638400 2509600 2585100 3274400 4 4 2 4 4 4 4 4 4 4 4 5792100000 2390200000 3401900000 1741 3199 1629 10202;10203;10204;10205;10206;10207;10208;10209 12299;12300;12301;12302;12303;12304;12305;12306 12306 8 ASALIDRPAPYFER Unmodified 1604.8311 0.83109076 3239 Q9Y2J2;Q9Y2J2-2;Q9Y2J2-4;Q9Y2J2-3 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed yes no 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 48.532 48.953 3 7.1908E-19 15450 20211116_3446_TMUAki_TMT10x_S_F7 163.8 127.51 10909000 19476000 254060 19439000 16882000 20124000 12159000 22113000 21077000 18185000 18237000 10159000 18173000 1224800 19844000 16084000 20503000 12857000 22265000 20952000 17923000 17680000 5 5 5 5 5 5 5 5 5 5 5 4179600 7143800 68646 7213600 10440000 13316000 6742400 7998100 7536000 6671200 6914800 3892200 6666200 498180 7445300 9921600 13069000 7057000 8360600 7609900 6570100 6689700 2 2 2 2 2 2 2 2 2 2 2 6729100 12332000 185420 12226000 6441800 6808200 5416900 14115000 13541000 11514000 11322000 6266800 11507000 726670 12399000 6162100 7434100 5799700 13905000 13342000 11352000 10990000 3 3 3 3 3 3 3 3 3 3 3 1059800000 275310000 784470000 1742 3239 1630 10210;10211;10212 12307;12308;12309;12310;12311 12311 5 ASASTQPAALSAEQAK Acetyl (Protein N-term) 1571.7791 0.77911477 2592 Q99622 C12orf57 Protein C10 yes yes 1 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 44.026 43.878 2 2.1106E-39 13431 20211116_3430_TMUAki_TMT10x_P_F3 158.3 138.69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1743 2592 1631 10213;10214 12312;12313 12312 2 ASAVSPANLPAVLLQPR Acetyl (Protein N-term) 1744.9836 0.98356866 1160 P51610;P51610-2;P51610-4;P51610-3 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 1 0 0 0 By MS/MS By MS/MS 5.67 3.3 2 4 3 3 79.948 79.939 2;3 1.8514E-29 25764 20211116_3447_TMUAki_TMT10x_S_F8 122.69 112.32 8337100 13630000 77207 14004000 9868100 9597600 10797000 6130700 5656600 6918300 9216200 7762700 12720000 719550 14194000 9485800 9971300 10745000 6431800 6105900 6724300 8780300 6 6 2 6 6 6 6 6 6 6 6 2725200 4200700 0 4325900 2667700 3736200 3181100 1794000 1461600 2199900 2911800 2537300 3920200 206550 4395500 2569600 3798900 3146600 1934200 1613600 2131800 2764000 2 2 0 2 2 2 2 2 2 2 2 5611900 9429300 77207 9678100 7200400 5861400 7616400 4336700 4195000 4718400 6304400 5225400 8799400 513010 9798600 6916200 6172300 7598000 4497600 4492200 4592500 6016400 4 4 2 4 4 4 4 4 4 4 4 4378400000 2501900000 1876500000 1744 1160 1632 10215;10216;10217;10218;10219;10220 12314;12315;12316;12317;12318;12319 12317 6 ASCASIDIEDATQHLR Acetyl (Protein N-term) 1827.8421 0.84212573 1995 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 1 0 0 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 3 2 59.734 59.537 2 3.5151E-60 19960 20211116_3439_TMUAki_TMT10x_S_F1 234.92 217.45 3247500 5540400 192470 5674700 4184900 5544100 4109600 4054900 3576700 3743800 4505500 3025200 5170300 461750 5777700 4022400 5622500 4156000 4188600 3694900 3669200 4317500 4 4 4 4 4 4 4 4 4 4 4 1830600 3071000 151990 3053900 2464600 3916800 2732600 2235200 1853400 2095900 2447700 1705600 2865500 302300 3129600 2379100 3899200 2730500 2353300 1945100 2052700 2342800 2 2 2 2 2 2 2 2 2 2 2 1416900 2469300 40483 2620800 1720300 1627200 1377000 1819800 1723300 1648000 2057800 1319600 2304700 159450 2648100 1643300 1723300 1425500 1835400 1749800 1616600 1974700 2 2 2 2 2 2 2 2 2 2 2 2364800000 1448600000 916180000 1745 1995 1633 10221;10222;10223;10224;10225 12320;12321;12322;12323;12324 12323 5 ASCLYGQLPK Unmodified 1135.5696 0.56957969 571 P09211 GSTP1 Glutathione S-transferase P yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 3.09 4 4 4 6 6 49.826 49.923 2;3 1.7613E-11 13562 20211116_3447_TMUAki_TMT10x_S_F8 215.42 182.57 43578000 66071000 570250 99104000 88187000 67061000 42306000 79498000 90558000 57159000 78571000 40578000 61775000 4042000 98291000 83426000 70573000 46806000 79532000 89590000 56745000 76166000 14 14 8 14 14 14 14 14 14 14 14 14984000 21305000 223150 30701000 62945000 45563000 21361000 25692000 29319000 18677000 24500000 13953000 19915000 2045600 30879000 59318000 45054000 24088000 26915000 29308000 18529000 23784000 6 6 4 6 6 6 6 6 6 6 6 28594000 44766000 347100 68404000 25242000 21498000 20945000 53806000 61238000 38483000 54071000 26625000 41860000 1996300 67412000 24108000 25520000 22718000 52617000 60282000 38215000 52382000 8 8 4 8 8 8 8 8 8 8 8 8493500000 5506300000 2987100000 1746 571 1634 10226;10227;10228;10229;10230;10231;10232;10233;10234;10235;10236;10237 12325;12326;12327;12328;12329;12330;12331;12332;12333;12334;12335;12336;12337;12338;12339 12339 15 ASDSLSARPSVRPLLLR Unmodified 1837.0534 0.05337956 2220 Q8NB49 ATP11C Phospholipid-transporting ATPase IG yes yes 0 0 0 2 By MS/MS 4 0 1 1 41.855 42.07 4 0.075198 11636 20211116_3442_TMUAki_TMT10x_S_F4 39.12 13.108 449220 790160 13335 847140 372260 368860 394950 544950 526990 499060 641390 418370 737510 48593 853040 358320 409230 403510 543800 534400 489300 615190 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 449220 790160 13335 847140 372260 368860 394950 544950 526990 499060 641390 418370 737510 48593 853040 358320 409230 403510 543800 534400 489300 615190 1 1 1 1 1 1 1 1 1 1 1 47946000 0 47946000 1747 2220 1635 10238 12340 12340 1 ASDVHEVRK Unmodified 1039.5411 0.54105675 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 1 By MS/MS 3 0 1 1 26.516 26.223 4 0.034874 7598 20211116_3441_TMUAki_TMT10x_S_F3 48.64 31.314 90726 187710 3031.4 174110 127240 96377 126220 89224 140840 126630 111960 84498 175100 10858 177420 122160 102820 128540 92198 141620 122140 108900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 90726 187710 3031.4 174110 127240 96377 126220 89224 140840 126630 111960 84498 175100 10858 177420 122160 102820 128540 92198 141620 122140 108900 1 1 1 1 1 1 1 1 1 1 1 1806600 0 1806600 1748 670;671 1636 10239 12341 12341 1 ASEAGEVPFNHEILR Unmodified 1667.8267 0.82673367 2062 Q7L5N1 COPS6 COP9 signalosome complex subunit 6 yes yes 0 0 0 0 By MS/MS By MS/MS 3.29 1.03 2 2 2 1 3 4 44.729 44.709 3 4.8833E-10 12252 20211116_3431_TMUAki_TMT10x_P_F4 134.81 115.07 6414100 10235000 183540 12988000 10780000 10920000 7019200 8635000 9045800 8607500 9724000 5973500 9560800 637810 13024000 10252000 11201000 7379300 8894000 9138000 8407700 9359400 6 6 3 6 6 6 6 6 6 6 6 3268800 5387800 127120 6710800 8202600 8601700 4976100 4798100 4727600 4308800 5058700 3044500 5032300 451450 6781000 7791100 8560700 5208500 5055700 4832200 4228400 4869700 3 3 2 3 3 3 3 3 3 3 3 3145300 4847400 56411 6277100 2577100 2318300 2043200 3836900 4318200 4298700 4665400 2929000 4528500 186360 6243500 2461000 2640100 2170800 3838300 4305800 4179300 4489800 3 3 1 3 3 3 3 3 3 3 3 1877400000 1095900000 781510000 1749 2062 1637 10240;10241;10242;10243;10244;10245;10246 12342;12343;12344;12345;12346;12347 12344 6 ASEAKEGEEAGPGDPLLEAVPK Unmodified 2193.0801 0.0801074 1851 Q16543 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 56.052 55.765 4 2.2041E-08 17939 20211116_3429_TMUAki_TMT10x_P_F2 101.29 87.124 10741000 18517000 163910 16549000 16271000 21632000 13252000 18777000 16838000 16053000 15657000 10002000 17271000 1102100 17098000 15534000 21660000 13711000 19154000 16931000 15791000 15140000 4 4 3 4 4 4 4 4 4 4 4 6896900 11115000 142720 10103000 11938000 17362000 9812000 11736000 10523000 10134000 9830600 6422700 10367000 775420 10487000 11402000 17114000 10086000 12168000 10650000 9963700 9504700 2 2 2 2 2 2 2 2 2 2 2 3843800 7402600 21186 6446100 4332200 4269800 3439900 7041100 6314800 5918900 5826000 3579000 6903800 326710 6611100 4131600 4546300 3624900 6985500 6281100 5827000 5635200 2 2 1 2 2 2 2 2 2 2 2 1452000000 1193400000 258580000 1750 1851 1638 10247;10248;10249 12348;12349;12350;12351 12348 4 ASEEHLK Unmodified 812.40283 0.40283194 770 P22392-2;P22392 NME2 Nucleoside diphosphate kinase B yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 27.909 27.649 3 0.0023238 8194 20211116_3441_TMUAki_TMT10x_S_F3 104.45 69.348 355600 611390 4837.7 538820 339950 505100 332690 242880 257940 256600 381230 331130 570220 33771 554300 326070 510750 335530 260590 270060 250040 363950 2 2 2 2 2 2 2 2 2 2 2 167990 271260 1149.7 240020 164200 292150 158490 121120 136290 132350 191810 156420 253000 14946 247850 157370 290570 160380 132120 141590 128800 183310 1 1 1 1 1 1 1 1 1 1 1 187610 340130 3688 298790 175750 212950 174200 121760 121660 124250 189420 174710 317220 18825 306460 168700 220180 175150 128470 128470 121240 180630 1 1 1 1 1 1 1 1 1 1 1 5650300 2165500 3484800 1751 770 1639 10250;10251 12352;12353 12353 2 ASEELQKDLEEVK Acetyl (Protein N-term) 1558.7726 0.77263241 2855 Q9HB71;Q9HB71-2 CACYBP Calcyclin-binding protein yes no 1 0 0 1 By MS/MS By MS/MS 1.4 0.8 4 1 2 3 64.806 64.726 2;3 1.0014E-22 20011 20211116_3428_TMUAki_TMT10x_P_F1 79.693 34.334 9312300 19542000 107190 10528000 21017000 45954000 19705000 56127000 41517000 43095000 28545000 8670700 18201000 940040 11906000 20119000 44858000 20732000 56162000 40822000 42626000 27938000 5 5 3 5 5 5 5 5 5 5 5 6727800 12979000 70234 7977000 11559000 33283000 15456000 30525000 23057000 24029000 16328000 6264100 12092000 609640 8869500 11180000 32283000 15709000 30980000 22885000 23735000 15960000 3 3 2 3 3 3 3 3 3 3 3 2584600 6563200 36959 2550600 9457900 12671000 4248900 25602000 18461000 19066000 12217000 2406600 6109200 330390 3036800 8939100 12575000 5022200 25182000 17937000 18890000 11979000 2 2 1 2 2 2 2 2 2 2 2 2493000000 1680300000 812710000 1752 2855 1640 10252;10253;10254;10255;10256 12354;12355;12356;12357;12358;12359;12360 12354 7 ASEGPAFFPGR Unmodified 1134.5458 0.54580778 2941 Q9NSD9;Q9NSD9-2 FARSB Phenylalanine--tRNA ligase beta subunit yes no 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 46.196 46.348 2 2.818E-11 12918 20211116_3431_TMUAki_TMT10x_P_F4 133.32 93.119 23459000 37718000 168150 44151000 36861000 34969000 22573000 34476000 34240000 30650000 34687000 21843000 35218000 2130000 44450000 34985000 36179000 24005000 34963000 34338000 30092000 33448000 7 7 4 7 7 7 7 7 7 7 7 9495200 14295000 0 16789000 24492000 23891000 12029000 14134000 13293000 12428000 13086000 8840100 13348000 885860 17058000 23164000 23681000 12892000 14812000 13461000 12208000 12630000 2 2 0 2 2 2 2 2 2 2 2 13964000 23423000 168150 27362000 12369000 11078000 10545000 20342000 20946000 18222000 21601000 13002000 21871000 1244100 27392000 11821000 12498000 11113000 20151000 20877000 17884000 20818000 5 5 4 5 5 5 5 5 5 5 5 2326800000 1106300000 1220400000 1753 2941 1641 10257;10258;10259;10260;10261;10262 12361;12362;12363;12364;12365;12366;12367;12368 12361 8 ASEIMVDDEELAQHPATTEDIR Oxidation (M) 2485.1279 0.12786223 2164 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 0 0 1 0 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 47.652 47.475 3 1.0938E-14 13315 20211116_3440_TMUAki_TMT10x_S_F2 136.02 127.73 2243400 4720200 18035 5115300 4281000 7302600 3175400 6739100 6134600 5217100 4885700 2089000 4405900 87258 5223200 4078100 7291800 3370400 6834800 6067100 5158000 4751700 4 4 2 4 4 4 4 4 4 4 4 1353800 3022500 0 3221100 3627200 6555800 2670700 5210800 4563100 3791100 3412500 1260600 2821100 0 3321900 3453900 6442700 2817600 5323400 4518600 3761100 3327600 2 2 0 2 2 2 2 2 2 2 2 889580 1697600 18035 1894200 653810 746770 504710 1528300 1571400 1426000 1473200 828420 1584800 87258 1901300 624250 849100 552770 1511400 1548500 1396900 1424200 2 2 2 2 2 2 2 2 2 2 2 2001200000 1708200000 292950000 1754 2164 1642 10263;10264;10265;10266 12369;12370;12371;12372 12371 2618 4 ASEIMVDDEELAQHPATTEDIR Unmodified 2469.1329 0.13294761 2164 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 53.208 53.05 3 2.1733E-14 17351 20211116_3439_TMUAki_TMT10x_S_F1 131.18 110.74 2131400 3931100 60735 4756000 3128800 3450800 2522100 2731500 3014100 2425100 3400900 1985000 3671200 160950 4774100 2988500 3579800 2605200 2804400 3058500 2381100 3268700 2 2 1 2 2 2 2 2 2 2 2 1091800 1837600 60735 2156100 2079500 2675400 1583900 1304800 1283900 1120900 1478300 1017000 1715900 160950 2184800 1985100 2662700 1623300 1390300 1326200 1102300 1420000 1 1 1 1 1 1 1 1 1 1 1 1039600 2093500 0 2599900 1049300 775360 938180 1426700 1730100 1304200 1922600 967950 1955300 0 2589300 1003400 917060 981960 1414100 1732300 1278800 1848700 1 1 0 1 1 1 1 1 1 1 1 1511400000 1108400000 403060000 1755 2164 1642 10267;10268;10269 12373;12374 12374 2 ASESSKPWPDATYGTGSASR Unmodified 2053.9341 0.93411186 3252 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 39.883 39.973 3 7.952E-26 9570 20211116_3445_TMUAki_TMT10x_S_F6 179.42 166.19 767030 1122100 24510 2533600 3283200 1338300 1301800 423180 614830 525200 1552200 714320 1052400 116990 2467100 3099500 1416600 1402800 479500 688800 508740 1468300 3 3 1 3 3 3 3 3 3 3 3 376090 538820 24510 1123700 3086300 1227700 1115900 221040 309860 278270 734420 350360 504970 91981 1106600 2911200 1221700 1210000 277250 365570 269420 695320 1 1 1 1 1 1 1 1 1 1 1 390940 583320 0 1409900 196960 110610 185870 202140 304970 246930 817750 363960 547390 25011 1360500 188280 194880 192800 202250 323240 239320 772980 2 2 0 2 2 2 2 2 2 2 2 121770000 102990000 18781000 1756 3252 1644 10270;10271 12375;12376;12377 12377 3 ASEVEEILDGNDEK Unmodified 1546.6999 0.6998614 1568 Q12824;Q12824-2 SMARCB1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 yes no 0 0 0 0 By MS/MS 1 0 2 2 65.098 65.098 2;3 9.4817E-51 20198 20211116_3428_TMUAki_TMT10x_P_F1 280.56 255.35 7075100 12054000 45574 13055000 12648000 17168000 9988200 8873200 9829300 8952700 9881900 6587900 11252000 695460 13309000 12063000 17049000 10266000 9442600 10008000 8740400 9531000 2 2 1 2 2 2 2 2 2 2 2 7075100 12054000 45574 13055000 12648000 17168000 9988200 8873200 9829300 8952700 9881900 6587900 11252000 695460 13309000 12063000 17049000 10266000 9442600 10008000 8740400 9531000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 968680000 968680000 0 1757 1568 1645 10272;10273 12378;12379 12379 2 ASEVMGPVEAAPEYR Oxidation (M) 1620.7454 0.7453718 2317 Q8WWY3;Q8WWY3-2;Q8WWY3-4 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes no 0 0 1 0 By matching By MS/MS 2 0 2 1 1 39.785 39.697 3 0.001047 9996 20211116_3440_TMUAki_TMT10x_S_F2 63.682 50.255 341410 561730 0 656250 356820 285020 318990 451960 493200 368170 515620 317830 524500 21729 657250 340740 317010 330940 448590 494920 363030 496710 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 341410 561730 0 656250 356820 285020 318990 451960 493200 368170 515620 317830 524500 21729 657250 340740 317010 330940 448590 494920 363030 496710 1 1 0 1 1 1 1 1 1 1 1 107220000 86190000 21029000 1758 2317 1646 10274;10275 12380 12380 2671 1 ASFANEDGQVSPGSLLLAGAIAGMPAASLVTPADVIK Unmodified 3537.8389 0.83888484 3141 Q9UJS0;Q9UJS0-2 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes no 0 0 0 0 By MS/MS By MS/MS 5.6 2.87 2 1 1 2 4 5 5 82.555 82.557 4;5 1.0609E-23 27499 20211116_3440_TMUAki_TMT10x_S_F2 126.67 116.88 12528000 19432000 256000 20286000 13221000 13954000 14791000 6881700 6072100 7993000 12885000 11666000 18135000 1134300 20540000 12722000 14447000 14651000 7387100 6800600 7760600 12219000 9 9 4 9 9 9 9 9 9 9 9 7878200 11755000 3745.7 12043000 6682000 9786200 8837900 4373900 3621800 4777600 8075600 7334300 10970000 505450 12232000 6452700 9987100 8690500 4732300 4070800 4649500 7652400 4 4 1 4 4 4 4 4 4 4 4 4650000 7677300 252250 8242700 6538500 4168100 5952900 2507900 2450300 3215400 4809500 4331300 7165900 628810 8308100 6268800 4460200 5960500 2654800 2729700 3111100 4566500 5 5 3 5 5 5 5 5 5 5 5 4081000000 1548400000 2532600000 1759 3141 1647 10276;10277;10278;10279;10280;10281;10282;10283;10284;10285 12381;12382;12383;12384;12385;12386;12387;12388;12389 12386 9 ASFANEDGQVSPGSLLLAGAIAGMPAASLVTPADVIK Oxidation (M) 3553.8338 0.83379946 3141 Q9UJS0;Q9UJS0-2 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes no 0 0 1 0 By MS/MS By MS/MS 7.75 0.433 1 3 1 3 81.14 81.149 4;5 5.0223E-17 26247 20211116_3447_TMUAki_TMT10x_S_F8 114.7 98.428 5471900 7938800 23245 6760800 6275500 7860700 8142300 6538000 6521600 7223400 7049200 5094900 7403300 465430 6996800 6064200 7910400 8111300 6734700 6724300 7026500 6783800 3 3 2 3 3 3 3 3 3 3 3 1457300 2296000 20683 2316700 1215400 2768100 1765700 1587400 1834700 2101900 1944100 1356900 2142500 115560 2368700 1179100 2765600 1764400 1689000 1867300 2031600 1872000 2 2 1 2 2 2 2 2 2 2 2 4014500 5642800 2562.4 4444100 5060200 5092600 6376600 4950600 4687000 5121600 5105100 3737900 5260900 349870 4628100 4885200 5144800 6347000 5045700 4857000 4994900 4911800 1 1 1 1 1 1 1 1 1 1 1 8983200000 898020000 8085200000 1760 3141 1647 10286;10287;10288;10289 12390;12391;12392 12392 3156 3 ASFENNCEIGCFAK Unmodified 1645.6865 0.68647672 1258 P56537;P56537-2 EIF6 Eukaryotic translation initiation factor 6 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.756 2 3 2 4 3 55.999 56.143 2;3 1.465E-29 17082 20211116_3433_TMUAki_TMT10x_P_F5 212.09 194.35 38441000 60886000 832820 73449000 67590000 79973000 48462000 53496000 47706000 47265000 55937000 35798000 56860000 4346300 74141000 64377000 80474000 50133000 55541000 48858000 46418000 53705000 10 10 7 10 10 10 10 10 10 10 10 28909000 45540000 743770 54046000 58607000 72229000 42131000 40226000 34634000 34529000 41917000 26923000 42526000 3483000 54807000 55824000 71742000 43365000 42344000 35821000 33957000 40211000 8 8 6 8 8 8 8 8 8 8 8 9531600 15346000 89058 19403000 8983800 7743600 6330200 13271000 13073000 12736000 14019000 8875500 14335000 863280 19333000 8552600 8732100 6768400 13198000 13038000 12461000 13495000 2 2 1 2 2 2 2 2 2 2 2 4572400000 3230900000 1341500000 1761 1258 1648 10290;10291;10292;10293;10294;10295;10296 12393;12394;12395;12396;12397;12398;12399;12400;12401;12402;12403 12395 11 ASFPQGPIGGANR Unmodified 1270.6418 0.64183343 350 O75608;O75608-2 LYPLA1 Acyl-protein thioesterase 1 yes no 0 0 0 0 By MS/MS 7 0 1 1 40.274 40.907 3 0.046042 12108 20211116_3446_TMUAki_TMT10x_S_F7 44.829 23.927 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1762 350 1649 10297 12404 12404 1 ASGADSKGDDLSTAILK Acetyl (Protein N-term) 1689.8421 0.84210896 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 1 0 0 1 By MS/MS By MS/MS 4.14 0.833 2 2 3 4 3 59.75 59.702 2;3 1.254E-47 18321 20211116_3431_TMUAki_TMT10x_P_F4 105 54.718 23152000 38453000 0 51069000 40175000 42142000 25074000 41154000 44115000 32368000 37705000 21555000 35928000 1897200 51074000 38125000 43459000 26812000 41629000 43819000 31974000 36572000 6 6 0 6 6 6 6 6 6 6 6 10124000 16091000 0 21735000 29303000 31525000 16393000 17804000 19267000 13829000 15655000 9425500 15036000 949070 21921000 27762000 31203000 17393000 18676000 19347000 13670000 15214000 3 3 0 3 3 3 3 3 3 3 3 13028000 22362000 0 29334000 10872000 10617000 8680200 23349000 24849000 18539000 22050000 12130000 20892000 948140 29153000 10363000 12256000 9419800 22953000 24472000 18304000 21358000 3 3 0 3 3 3 3 3 3 3 3 5192800000 3527600000 1665200000 1763 1235 1650 10298;10299;10300;10301;10302;10303;10304 12405;12406;12407;12408;12409;12410 12407 6 ASGCEGEDVVTLLK Unmodified 1476.713 0.71300904 1188 P52789 HK2 Hexokinase-2 yes yes 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 62.559 62.268 3 0.0033153 22148 20211116_3441_TMUAki_TMT10x_S_F3 65.043 48.906 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1764 1188 1651 10305;10306 12411;12412 12411 2 ASGDSARPVLLQVAESAYR Unmodified 1989.028 0.02795267 3141 Q9UJS0;Q9UJS0-2 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes no 0 0 0 1 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 57.931 58.181 3 8E-51 18538 20211116_3435_TMUAki_TMT10x_P_F7 231.39 216.29 46356000 76901000 268620 74008000 64627000 77349000 53831000 52665000 48763000 53681000 60292000 43164000 71746000 4268300 75754000 61707000 78037000 55011000 54822000 50239000 52386000 57805000 9 9 5 9 9 9 9 9 9 9 9 25587000 41398000 160370 39239000 39615000 55969000 33292000 28693000 27400000 29857000 32164000 23824000 38620000 2416300 40433000 37832000 55373000 33918000 30585000 28301000 29112000 30880000 5 5 3 5 5 5 5 5 5 5 5 20770000 35504000 108240 34769000 25012000 21380000 20539000 23971000 21363000 23824000 28128000 19339000 33126000 1852000 35321000 23875000 22665000 21093000 24237000 21938000 23274000 26925000 4 4 2 4 4 4 4 4 4 4 4 9331000000 4453800000 4877200000 1765 3141 1652 10307;10308;10309;10310;10311;10312 12413;12414;12415;12416;12417;12418;12419;12420;12421 12415 9 ASGGLPQFGDEYDFYR Unmodified 1820.8006 0.8005785 1486 Q01780;Q01780-2 EXOSC10 Exosome component 10 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 68.807 68.809 2 1.7972E-42 22337 20211116_3433_TMUAki_TMT10x_P_F5 226.23 210.69 10825000 17483000 12234 16625000 12112000 17172000 12694000 10936000 10678000 11944000 13428000 10078000 16310000 760030 17029000 11618000 17320000 12784000 11464000 11049000 11624000 12869000 5 5 1 5 5 5 5 5 5 5 5 6538100 10140000 12234 10073000 6719300 12657000 7760000 6810600 6530800 7059200 7915500 6087000 9461400 459960 10320000 6463400 12603000 7778900 7227000 6746900 6884200 7593000 3 3 1 3 3 3 3 3 3 3 3 4287100 7343000 0 6551800 5392400 4515100 4934300 4125600 4147200 4885100 5512900 3991100 6848800 300080 6709300 5154300 4716600 5004700 4237000 4302000 4739800 5275800 2 2 0 2 2 2 2 2 2 2 2 1621500000 830700000 790820000 1766 1486 1653 10313;10314;10315;10316 12422;12423;12424;12425;12426 12423 5 ASGKFELLDR Unmodified 1134.6033 0.60332266 1154 P51532-5;P51532-2;P51532-3;P51532-4;P51532;P51531;P51531-2 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 yes no 0 0 0 1 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 45.953 46.213 3 0.0037075 13815 20211116_3435_TMUAki_TMT10x_P_F7 73.082 47.423 8655100 12540000 78340 15333000 16821000 15862000 9253700 10010000 11125000 9786700 11480000 8059100 11711000 870740 15452000 15941000 15995000 9840000 10466000 11249000 9567400 11063000 3 3 2 3 3 3 3 3 3 3 3 6369600 8849300 24366 10855000 14461000 13888000 7022500 7002200 7941400 6879900 8062700 5930700 8264900 629920 10978000 13678000 13806000 7540600 7463100 8043100 6724300 7774000 2 2 1 2 2 2 2 2 2 2 2 2285500 3690300 53974 4477600 2359700 1974100 2231100 3007700 3183900 2906800 3417000 2128400 3446400 240820 4474800 2262600 2188700 2299300 3002800 3205600 2843100 3289000 1 1 1 1 1 1 1 1 1 1 1 935830000 606290000 329530000 1767 1154 1654 10317;10318;10319 12427;12428;12429 12428 3 ASGNYATVISHNPETK Unmodified 1687.8166 0.81656291 1384 P62917 RPL8 60S ribosomal protein L8 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 3 1 33.902 33.958 3 2.1705E-21 9576 20211116_3433_TMUAki_TMT10x_P_F5 168.69 143.76 3282900 4887200 22339 7895700 10918000 7626200 4292900 5438600 7229000 3952700 5866700 3056700 4571500 380040 7838400 10303000 7736500 4791800 5595500 7177400 3921700 5701500 4 4 2 4 4 4 4 4 4 4 4 2258600 3354000 22339 5169000 10048000 6985000 3477200 3664100 4729300 2795800 3758100 2103100 3136400 306290 5172200 9470100 6929200 3909400 3867000 4722000 2766300 3655300 3 3 2 3 3 3 3 3 3 3 3 1024300 1533200 0 2726700 870210 641130 815750 1774500 2499600 1157000 2108600 953630 1435100 73746 2666200 832440 807250 882430 1728500 2455400 1155400 2046200 1 1 0 1 1 1 1 1 1 1 1 2260200000 1865600000 394650000 1768 1384 1655 10320;10321;10322;10323 12430;12431;12432;12433 12431 4 ASGPGLNTTGVPASLPVEFTIDAK Unmodified 2341.2165 0.2165413 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 77.721 77.74 3 2.4486E-11 27332 20211116_3446_TMUAki_TMT10x_S_F7 105.79 89.669 6833800 10982000 61026 8791000 7309600 10271000 8327600 7509900 6098700 7434600 7377600 6363400 10239000 626330 9145100 7037900 10310000 8324800 7772600 6347300 7264200 7077300 3 3 2 3 3 3 3 3 3 3 3 4137100 6857600 56487 5879700 3851200 7349600 4967800 4986400 3874900 4935400 4598700 3852500 6395200 387860 6089300 3723900 7343500 4946900 5187600 4015500 4822300 4413800 2 2 1 2 2 2 2 2 2 2 2 2696700 4124100 4538.8 2911300 3458500 2921200 3359700 2523500 2223800 2499200 2778900 2510900 3843700 238470 3055800 3313900 2966400 3377900 2585000 2331800 2441900 2663500 1 1 1 1 1 1 1 1 1 1 1 2921700000 1320600000 1601100000 1769 755 1656 10324;10325;10326;10327 12434;12435;12436 12436 3 ASGPPVSELITK Unmodified 1197.6605 0.66050319 606;695;694 P10412;P16403;P16402 HIST1H1E;HIST1H1C;HIST1H1D Histone H1.4;Histone H1.2;Histone H1.3 no no 0 0 0 0 By MS/MS By MS/MS 6.46 1.2 2 1 4 4 14 49 5 39 40 31.976 32.097 2;3 1.9128E-30 15455 20211116_3434_TMUAki_TMT10x_P_F6 265.36 211.39 394410000 589160000 2814600 829410000 775640000 658160000 432640000 481790000 647510000 500530000 621800000 367220000 550650000 35550000 826600000 734970000 677090000 463430000 499310000 648420000 488070000 600620000 63 63 29 63 63 63 63 63 63 63 63 186470000 270110000 577130 382330000 620220000 525680000 290650000 224470000 299660000 229550000 285500000 173600000 252460000 17766000 384260000 586200000 519920000 312330000 243580000 303960000 223980000 275850000 33 33 16 33 33 33 33 33 33 33 33 207940000 319050000 2237500 447080000 155420000 132480000 141980000 257310000 347850000 270980000 336300000 193620000 298190000 17784000 442340000 148770000 157170000 151090000 255730000 344460000 264090000 324770000 30 30 13 30 30 30 30 30 30 30 30 84847000000 51324000000 33523000000 1770 606;695;694 1657 10328;10329;10330;10331;10332;10333;10334;10335;10336;10337;10338;10339;10340;10341;10342;10343;10344;10345;10346;10347;10348;10349;10350;10351;10352;10353;10354;10355;10356;10357;10358;10359;10360;10361;10362;10363;10364;10365;10366;10367;10368;10369;10370;10371;10372;10373;10374;10375;10376;10377;10378;10379;10380;10381;10382;10383;10384;10385;10386;10387;10388;10389;10390;10391;10392;10393;10394;10395;10396;10397;10398;10399;10400;10401;10402;10403;10404;10405;10406 12437;12438;12439;12440;12441;12442;12443;12444;12445;12446;12447;12448;12449;12450;12451;12452;12453;12454;12455;12456;12457;12458;12459;12460;12461;12462;12463;12464;12465;12466;12467;12468;12469;12470;12471;12472;12473;12474;12475;12476;12477;12478;12479;12480;12481;12482;12483;12484;12485;12486;12487;12488;12489;12490;12491;12492;12493;12494;12495;12496;12497;12498;12499;12500;12501;12502;12503;12504;12505;12506;12507;12508;12509;12510;12511;12512;12513;12514;12515;12516;12517;12518;12519;12520;12521;12522;12523;12524;12525;12526;12527;12528 12451 92 ASGQAFELILSPR Unmodified 1387.746 0.74596415 698 P16949;P16949-2 STMN1 Stathmin yes no 0 0 0 0 By MS/MS By MS/MS 7.09 0.793 3 4 4 6 5 66.799 66.989 2;3 1.4985E-22 20456 20211116_3447_TMUAki_TMT10x_S_F8 208.08 157.17 66098000 115210000 500570 100860000 86485000 127350000 85838000 151640000 90161000 94643000 100580000 61545000 107450000 5981400 104310000 82924000 128640000 87237000 151250000 91904000 94781000 96703000 17 17 10 17 17 17 17 17 17 17 17 33820000 57826000 319840 51932000 43096000 85543000 46179000 76168000 46375000 48206000 50917000 31492000 53936000 3170400 53898000 41416000 84862000 46687000 77079000 47331000 48232000 48977000 9 9 6 9 9 9 9 9 9 9 9 32277000 57380000 180730 48932000 43389000 41803000 39659000 75473000 43786000 46437000 49663000 30053000 53510000 2810900 50409000 41508000 43783000 40551000 74168000 44573000 46549000 47726000 8 8 4 8 8 8 8 8 8 8 8 21312000000 11714000000 9598200000 1771 698 1658 10407;10408;10409;10410;10411;10412;10413;10414;10415;10416;10417 12529;12530;12531;12532;12533;12534;12535;12536;12537;12538;12539;12540;12541;12542;12543;12544;12545;12546 12545 18 ASGVAVSDGVIK Acetyl (Protein N-term) 1143.6136 0.61355299 787 P23528 CFL1 Cofilin-1 yes yes 1 0 0 0 By MS/MS By MS/MS 3.73 2.22 2 2 2 1 2 1 1 6 5 54.608 54.539 2 1.9344E-15 18941 20211116_3441_TMUAki_TMT10x_S_F3 103.7 88.618 77981000 124950000 1988300 148440000 95448000 99854000 80269000 89282000 95457000 78359000 112650000 72622000 116680000 8353000 149050000 91245000 104480000 82684000 90982000 97056000 76979000 108140000 9 9 5 9 9 9 9 9 9 9 9 25585000 38444000 43085 45200000 48440000 56207000 32797000 28913000 29979000 24933000 33859000 23821000 35897000 2280900 45799000 46043000 55968000 33998000 30655000 30759000 24515000 32542000 4 4 1 4 4 4 4 4 4 4 4 52396000 86503000 1945300 103240000 47008000 43647000 47472000 60369000 65478000 53426000 78789000 48800000 80779000 6072200 103250000 45202000 48516000 48686000 60327000 66297000 52464000 75593000 5 5 4 5 5 5 5 5 5 5 5 26804000000 12646000000 14157000000 1772 787 1659 10418;10419;10420;10421;10422;10423;10424;10425;10426;10427;10428 12547;12548;12549;12550;12551;12552;12553;12554;12555;12556;12557;12558 12557 12 ASGVQVADEVCR Acetyl (Protein N-term) 1331.614 0.6139637 1282 P60981 DSTN Destrin yes yes 1 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 43.79 43.661 2 8.1791E-20 11481 20211116_3428_TMUAki_TMT10x_P_F1 168.83 145.81 4996000 8787400 53560 9204800 6576100 9231800 5865300 5898200 6107200 5431300 6936600 4652100 8201100 473620 9361400 6290000 9328200 5994100 6151100 6231800 5323700 6665800 5 5 2 5 5 5 5 5 5 5 5 2747200 4805000 0 4817800 4861300 6855100 4136000 3180000 3441700 3021600 3737200 2557800 4483600 244740 4944500 4642200 6775200 4211700 3414000 3542200 2957600 3596000 3 3 0 3 3 3 3 3 3 3 3 2248800 3982400 53560 4387000 1714800 2376800 1729400 2718100 2665400 2409700 3199400 2094200 3717500 228880 4416800 1647800 2553000 1782400 2737100 2689600 2366200 3069800 2 2 2 2 2 2 2 2 2 2 2 1980300000 1415000000 565310000 1773 1282 1660 10429;10430;10431;10432;10433;10434 12559;12560;12561;12562;12563 12559 5 ASGVTVNDEVIK Acetyl (Protein N-term) 1272.6561 0.65614609 3229 Q9Y281 CFL2 Cofilin-2 yes yes 1 0 0 0 By MS/MS 2 0 1 1 54.87 54.621 2 2.0028E-12 17472 20211116_3429_TMUAki_TMT10x_P_F2 84.213 62.706 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1774 3229 1661 10435 12564 12564 1 ASHLLETLLCK Unmodified 1283.6908 0.69075746 1508 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 0 0 0 0 By MS/MS 2 0 1 1 68.718 68.516 3 1.408E-07 21862 20211116_3440_TMUAki_TMT10x_S_F2 112.15 94.416 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1775 1508 1662 10436 12565 12565 1 ASHTAPQVLFSHR Unmodified 1449.7477 0.74769548 168 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 31.263 31.287 4 4.7305E-06 8452 20211116_3439_TMUAki_TMT10x_S_F1 103.14 85.768 529660 792430 9681.2 725840 618250 787550 632580 463560 500190 487210 717190 493240 739180 54176 746100 593750 791210 636810 488370 522350 474860 685130 2 2 2 2 2 2 2 2 2 2 2 249520 351600 1828.6 342100 340070 464990 285750 199560 227930 216290 335020 232340 328050 23659 351500 324820 460160 290900 216790 238210 210550 319870 1 1 1 1 1 1 1 1 1 1 1 280150 440830 7852.6 383740 278170 322550 346830 264000 272260 270930 382170 260900 411130 30517 394600 268930 331050 345910 271580 284140 264320 365260 1 1 1 1 1 1 1 1 1 1 1 50169000 23089000 27080000 1776 168 1663 10437;10438 12566;12567 12567 2 ASHTAPQVLFSHREPPLELK Unmodified 2256.2015 0.20150036 168 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 0 0 0 1 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 44.82 45.208 5 1.69E-18 13353 20211116_3435_TMUAki_TMT10x_P_F7 155.88 137.15 4232900 6254500 107600 8074700 6944800 8303400 5018600 5708000 5602100 4716300 6169300 3942100 5842900 489200 8112400 6617100 8386500 5209300 5904800 5693700 4647100 5933700 3 3 3 3 3 3 3 3 3 3 3 2937100 4178300 65551 5261200 5913100 7245700 3951800 4159300 3933400 3207600 4256700 2735200 3902800 346280 5320500 5624400 7189700 4110500 4356200 4013800 3171900 4096300 2 2 2 2 2 2 2 2 2 2 2 1295800 2076200 42052 2813500 1031600 1057700 1066800 1548700 1668600 1508800 1912500 1206900 1940000 142920 2791900 992610 1196800 1098900 1548600 1679900 1475200 1837400 1 1 1 1 1 1 1 1 1 1 1 1324200000 1061800000 262360000 1777 168 1664 10439;10440;10441 12568;12569;12570 12568 3 ASILNTWISLK Unmodified 1244.7129 0.71287311 767 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 0 0 By MS/MS 5 0 1 1 78.867 78.883 2 0.066144 26483 20211116_3433_TMUAki_TMT10x_P_F5 58.511 24.715 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1778 767 1665 10442 12571 12571 1 ASINMLR Unmodified 803.43236 0.43235793 716 P18124 RPL7 60S ribosomal protein L7 yes yes 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 39.184 39.629 2 0.012303 9402 20211116_3447_TMUAki_TMT10x_S_F8 96.19 2.184 4279600 6234800 17818 7283200 6940300 4609800 4424000 3249600 3029300 3121900 5000100 3984800 5821600 396720 7316000 6591700 4830500 4575800 3368800 3212800 3054300 4762400 4 4 2 4 4 4 4 4 4 4 4 1749900 2349200 14966 2967800 4693000 3119700 2204200 1670000 1657000 1586400 2082400 1629400 2194400 200250 2986200 4438200 3136200 2349000 1768600 1724800 1552800 1995700 1 1 1 1 1 1 1 1 1 1 1 2529700 3885600 2851.7 4315400 2247300 1490200 2219800 1579600 1372300 1535500 2917600 2355400 3627200 196480 4329800 2153500 1694300 2226900 1600200 1488000 1501400 2766700 3 3 1 3 3 3 3 3 3 3 3 137240000 55617000 81618000 1779 716 1666 10443;10444;10445 12572;12573;12574;12575 12575 4 ASIPFSVVGSNQLIEAK Unmodified 1758.9516 0.95159983 1752 Q15019;Q15019-2;Q15019-3 SEPT2 Septin-2 yes no 0 0 0 0 By MS/MS By MS/MS 4.92 3.02 4 1 2 2 4 6 7 74.26 74.24 2;3 1.5434E-69 23485 20211116_3447_TMUAki_TMT10x_S_F8 306.07 264.2 71082000 119250000 1075800 107900000 84152000 116140000 88360000 83636000 80630000 82897000 92285000 66190000 111230000 6781600 111000000 80840000 117080000 89168000 86654000 82779000 80992000 88663000 18 18 12 18 18 18 18 18 18 18 18 41822000 67710000 617530 61736000 44395000 81255000 52983000 46887000 46171000 47378000 51866000 38943000 63159000 3826800 63695000 42805000 80801000 53083000 49421000 47472000 46252000 49857000 9 9 4 9 9 9 9 9 9 9 9 29260000 51535000 458280 46162000 39757000 34888000 35376000 36749000 34458000 35518000 40418000 27247000 48068000 2954900 47303000 38035000 36279000 36084000 37233000 35307000 34740000 38806000 9 9 8 9 9 9 9 9 9 9 9 24513000000 14257000000 10256000000 1780 1752 1667 10446;10447;10448;10449;10450;10451;10452;10453;10454;10455;10456;10457;10458 12576;12577;12578;12579;12580;12581;12582;12583;12584;12585;12586;12587;12588;12589;12590;12591;12592;12593 12593 18 ASITPGTILIILTGR Unmodified 1524.9239 0.92392852 1499 Q02878 RPL6 60S ribosomal protein L6 yes yes 0 0 0 0 By MS/MS By MS/MS 6.29 1.18 1 4 4 5 3 8 9 81.325 81.334 2;3 2.4788E-43 26259 20211116_3434_TMUAki_TMT10x_P_F6 260.57 223.46 59850000 101700000 53284 88114000 62049000 75949000 67044000 42748000 50057000 51281000 58930000 55720000 94846000 4075600 90668000 59572000 77376000 67218000 45394000 51982000 49732000 56573000 16 16 3 16 16 16 16 16 16 16 16 30046000 50366000 6405.3 42924000 28348000 49014000 32146000 22130000 27041000 26584000 30029000 27973000 46969000 2156700 44406000 27257000 48953000 32250000 23990000 27839000 25779000 28875000 8 8 1 8 8 8 8 8 8 8 8 29804000 51334000 46879 45190000 33701000 26935000 34898000 20618000 23016000 24697000 28901000 27747000 47878000 1918800 46262000 32316000 28424000 34968000 21404000 24143000 23953000 27698000 8 8 2 8 8 8 8 8 8 8 8 16865000000 7616700000 9248200000 1781 1499 1668 10459;10460;10461;10462;10463;10464;10465;10466;10467;10468;10469;10470;10471;10472;10473;10474;10475 12594;12595;12596;12597;12598;12599;12600;12601;12602;12603;12604;12605;12606;12607;12608;12609;12610 12598 17 ASKPLPPAPAPDEYLVSPITGEK Unmodified 2376.2577 0.25767783 1810 Q15459;Q15459-2 SF3A1 Splicing factor 3A subunit 1 yes no 0 0 0 1 By MS/MS By MS/MS 7 0 4 2 2 63.876 64.421 3;4 6.1954E-11 21697 20211116_3446_TMUAki_TMT10x_S_F7 106.12 101.12 31327000 51465000 215850 54971000 35146000 49004000 33472000 33341000 30781000 35029000 36760000 29170000 48035000 2816500 55743000 33669000 49938000 33956000 34740000 31644000 34141000 35276000 8 8 5 8 8 8 8 8 8 8 8 20042000 31459000 164470 33669000 23340000 38673000 23020000 22360000 19930000 22717000 22951000 18662000 29363000 1848200 34267000 22380000 38722000 23272000 23568000 20517000 22172000 22046000 5 5 4 5 5 5 5 5 5 5 5 11285000 20006000 51386 21302000 11806000 10332000 10451000 10981000 10852000 12311000 13810000 10508000 18672000 968320 21476000 11288000 11216000 10685000 11172000 11127000 11969000 13230000 3 3 1 3 3 3 3 3 3 3 3 6038900000 2970100000 3068900000 1782 1810 1669 10476;10477;10478;10479 12611;12612;12613;12614;12615;12616;12617;12618 12616 8 ASLAETDKITLEVAK Unmodified 1587.872 0.87195252 971 P38606;P38606-2 ATP6V1A V-type proton ATPase catalytic subunit A yes no 0 0 0 1 By MS/MS By MS/MS 5 0.707 1 2 1 3 1 57.791 57.952 3 7.7034E-10 17846 20211116_3433_TMUAki_TMT10x_P_F5 134.14 103.18 12326000 20871000 184880 20917000 18731000 24987000 14731000 15805000 16293000 15420000 17596000 11478000 19475000 1262900 21397000 17870000 24998000 15200000 16521000 16553000 15076000 16934000 3 3 2 3 3 3 3 3 3 3 3 8935000 14444000 184880 14916000 14411000 21429000 11320000 11366000 11849000 10996000 12343000 8320700 13480000 989770 15281000 13751000 21203000 11660000 12053000 12049000 10755000 11892000 2 2 2 2 2 2 2 2 2 2 2 3391000 6426500 0 6001000 4320300 3557900 3410700 4438600 4444400 4424100 5252800 3157200 5995000 273170 6115600 4118300 3795000 3539200 4468000 4504900 4321400 5042200 1 1 0 1 1 1 1 1 1 1 1 715490000 268040000 447450000 1783 971 1670 10480;10481;10482;10483 12619;12620;12621;12622;12623 12620 5 ASLASLPPLHVAK Unmodified 1302.766 0.76597131 1694 Q14203;Q14203-6;Q14203-3;Q14203-4;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 By MS/MS 2 0 1 1 54.401 54.152 3 0.0019045 17287 20211116_3429_TMUAki_TMT10x_P_F2 64.65 39.875 5039800 6103200 403690 378680 17168000 17540000 0 14400000 0 1213000 5653100 4695500 5673500 963920 1047300 16054000 16739000 0 14405000 0 1728000 5278300 1 1 1 1 1 1 0 1 0 1 1 5039800 6103200 403690 378680 17168000 17540000 0 14400000 0 1213000 5653100 4695500 5673500 963920 1047300 16054000 16739000 0 14405000 0 1728000 5278300 1 1 1 1 1 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 566200000 566200000 0 1784 1694 1671 10484 12624 12624 1 ASLCISTK Unmodified 878.45315 0.45315295 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.25 1.92 1 2 1 3 1 40.212 40.845 2 0.00044665 12234 20211116_3446_TMUAki_TMT10x_S_F7 151.5 55.305 1307900 2045800 535.17 2112100 1341500 1481900 1474000 1606700 1494600 1361800 1758700 1217700 1909200 100760 2140600 1289100 1551300 1488800 1620000 1529000 1340100 1688300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1307900 2045800 535.17 2112100 1341500 1481900 1474000 1606700 1494600 1361800 1758700 1217700 1909200 100760 2140600 1289100 1551300 1488800 1620000 1529000 1340100 1688300 2 2 1 2 2 2 2 2 2 2 2 135600000 0 135600000 1785 586 1672 10485;10486;10487;10488 12625;12626;12627;12628;12629 12629 5 ASLCISTKK Unmodified 1006.5481 0.54811597 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 1 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 37.986 37.887 3 0.00044274 10708 20211116_3429_TMUAki_TMT10x_P_F2 112.13 52.065 14034000 21841000 21590 20382000 16606000 23549000 14848000 14528000 15537000 14058000 16406000 13067000 20374000 1096500 20944000 15871000 23592000 15174000 15213000 15807000 13749000 15799000 5 5 3 5 5 5 5 5 5 5 5 9989300 15619000 0 14232000 12875000 19648000 11189000 10403000 12249000 10186000 11659000 9300000 14569000 745460 14698000 12295000 19474000 11470000 11037000 12394000 9957300 11266000 2 2 0 2 2 2 2 2 2 2 2 4045100 6222400 21590 6150100 3730900 3901200 3658800 4125900 3287900 3871900 4746700 3766600 5805900 351090 6245600 3576800 4118000 3703500 4175900 3412800 3792000 4533800 3 3 3 3 3 3 3 3 3 3 3 1103500000 735390000 368120000 1786 586 1673 10489;10490;10491;10492;10493 12630;12631;12632;12633;12634 12631 5 ASLEEPPDGPSAGQATGPGEGRR Unmodified 2235.0516 0.051601238 2693 Q9BVG9 PTDSS2 Phosphatidylserine synthase 2 yes yes 0 0 0 1 By MS/MS 3 0 1 1 33.63 33.391 3 2.3189E-15 10395 20211116_3441_TMUAki_TMT10x_S_F3 130.44 113.36 150160 257650 579.58 364750 113850 87176 93917 170550 221300 132900 338910 139810 240820 12481 360390 108700 107800 100250 168070 223730 131350 323300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 150160 257650 579.58 364750 113850 87176 93917 170550 221300 132900 338910 139810 240820 12481 360390 108700 107800 100250 168070 223730 131350 323300 1 1 1 1 1 1 1 1 1 1 1 15090000 0 15090000 1787 2693 1674 10494 12635 12635 1 ASLLDDYQLPEILR Unmodified 1644.8723 0.87228688 2794 Q9H2U1;Q9H2U1-3;Q9H2U1-2 DHX36 ATP-dependent RNA helicase DHX36 yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 78.845 78.859 2 1.1825E-13 25354 20211116_3444_TMUAki_TMT10x_S_F5 149 125.15 13069000 20637000 369850 22438000 14600000 13424000 16141000 6756800 5291800 8242400 13778000 12172000 19263000 1449700 22629000 14060000 14082000 15956000 7250800 6159400 7988800 13028000 2 2 2 2 2 2 2 2 2 2 2 5347300 8143500 153220 9011400 5153400 7367100 6379900 2946200 2006700 3736400 5652100 4980000 7602000 583410 9107200 4981400 7507200 6271900 3242300 2362200 3616600 5339500 1 1 1 1 1 1 1 1 1 1 1 7722000 12493000 216630 13427000 9446600 6057300 9761100 3810600 3285100 4506100 8125700 7191500 11661000 866250 13521000 9078900 6574900 9684200 4008500 3797200 4372200 7688700 1 1 1 1 1 1 1 1 1 1 1 545640000 232040000 313600000 1788 2794 1675 10495;10496 12636;12637 12637 2 ASLLPQSLAAAAAVPTR Unmodified 1635.9308 0.93080481 1569 Q12849 GRSF1 G-rich sequence factor 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.25 0.433 3 1 1 3 68.468 68.237 2;3 1.3989E-45 24643 20211116_3441_TMUAki_TMT10x_S_F3 214.45 174.6 7411700 12241000 490910 14389000 10119000 11808000 9586400 10447000 10260000 9412500 11693000 6904700 11430000 1109900 14489000 9718900 12158000 9772600 10659000 10459000 9235400 11235000 3 3 3 3 3 3 3 3 3 3 3 3062300 5244900 137840 5776100 5462500 7156100 4878400 4555700 4225300 4275500 5058300 2852300 4896100 415960 5875700 5231400 7146600 4958700 4754800 4356600 4187200 4853800 2 2 2 2 2 2 2 2 2 2 2 4349400 6996200 353070 8613100 4656500 4651900 4708100 5891100 6034700 5137000 6634400 4052400 6534200 693950 8613300 4487600 5011200 4814000 5904600 6102500 5048200 6381400 1 1 1 1 1 1 1 1 1 1 1 652340000 340270000 312070000 1789 1569 1676 10497;10498;10499;10500 12638;12639;12640;12641;12642 12641 5 ASLLQNESTNEQLQIHYK Unmodified 2115.0596 0.059646729 2659 Q9BT78;Q9BT78-2 COPS4 COP9 signalosome complex subunit 4 yes no 0 0 0 0 By MS/MS By MS/MS 5.8 0.4 1 4 3 2 53.134 53.243 3;4 3.3121E-31 14755 20211116_3434_TMUAki_TMT10x_P_F6 182.18 160.34 18696000 32243000 365910 30832000 26579000 33667000 20615000 32658000 29298000 29064000 27823000 17410000 30081000 1992800 31596000 25357000 34100000 21491000 33148000 29373000 28533000 26886000 8 8 7 8 8 8 8 8 8 8 8 8443600 14306000 172450 14165000 15290000 23109000 12190000 13540000 12962000 12517000 12114000 7863200 13349000 956650 14595000 14593000 22775000 12551000 14219000 13122000 12267000 11712000 4 4 4 4 4 4 4 4 4 4 4 10252000 17937000 193460 16666000 11289000 10558000 8424900 19118000 16336000 16547000 15709000 9547000 16733000 1036200 17001000 10764000 11325000 8940400 18929000 16251000 16267000 15174000 4 4 3 4 4 4 4 4 4 4 4 2179300000 1276700000 902610000 1790 2659 1677 10501;10502;10503;10504;10505 12643;12644;12645;12646;12647;12648;12649;12650;12651 12645 9 ASLLSFQDEEEENEEVFK Unmodified 2141.9641 0.96407459 3316 Q9Y5B6;Q9Y5B6-3;Q9Y5B6-4;Q9Y5B6-2 PAXBP1 PAX3- and PAX7-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 75.31 75.233 3 4.5709E-06 26332 20211116_3439_TMUAki_TMT10x_S_F1 91.475 81.278 2440900 4127700 76832 4133700 3080100 2643600 2922300 2644800 2325500 2422700 3076800 2273300 3851600 282920 4194300 2954100 2785100 2954000 2682300 2418600 2375300 2944800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2440900 4127700 76832 4133700 3080100 2643600 2922300 2644800 2325500 2422700 3076800 2273300 3851600 282920 4194300 2954100 2785100 2954000 2682300 2418600 2375300 2944800 1 1 1 1 1 1 1 1 1 1 1 280960000 0 280960000 1791 3316 1678 10506;10507 12652;12653 12653 2 ASLLTDEEDVDMALDQR Oxidation (M) 1935.8732 0.87315109 1194 P52948;P52948-6;P52948-5;P52948-2 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 0 0 1 0 By MS/MS By matching 1 0 2 1 1 68.186 68.092 3 6.2946E-06 21427 20211116_3428_TMUAki_TMT10x_P_F1 96.773 90.61 2700300 4920900 0 3766300 3858200 7396700 3590200 4452500 3953300 3939200 3834300 2514100 4587400 211730 3978100 3690800 7245200 3666900 4660200 4001700 3868300 3702500 1 1 0 1 1 1 1 1 1 1 1 2700300 4920900 0 3766300 3858200 7396700 3590200 4452500 3953300 3939200 3834300 2514100 4587400 211730 3978100 3690800 7245200 3666900 4660200 4001700 3868300 3702500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 360710000 240610000 120100000 1792 1194 1679 10508;10509 12654 12654 1599 1 ASLNGADIYSGCCTLK Unmodified 1728.7811 0.78110538 677 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 4 4 4 4 54.9 55.292 2;3 2.6506E-57 15998 20211116_3445_TMUAki_TMT10x_S_F6 244 201.66 33589000 57488000 226730 68800000 52566000 52751000 33809000 55350000 51982000 47720000 50640000 31273000 53685000 2831700 69148000 49917000 54787000 35838000 55917000 52040000 46921000 48892000 9 9 4 9 9 9 9 9 9 9 9 14109000 23300000 27695 26779000 34764000 38772000 21987000 22606000 21469000 20346000 19814000 13135000 21755000 1213800 27253000 32996000 38395000 22954000 23732000 21805000 19964000 19165000 4 4 1 4 4 4 4 4 4 4 4 19480000 34188000 199030 42020000 17803000 13979000 11823000 32745000 30512000 27374000 30826000 18138000 31931000 1617900 41895000 16921000 16392000 12883000 32185000 30234000 26956000 29727000 5 5 3 5 5 5 5 5 5 5 5 9214400000 5361200000 3853200000 1793 677 1680 10510;10511;10512;10513;10514;10515;10516;10517 12655;12656;12657;12658;12659;12660;12661;12662;12663;12664 12660 10 ASLNPSDTPPSVVNEDFLHDLK Unmodified 2394.1703 0.17031939 61 O00116 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal yes yes 0 0 0 0 By MS/MS 4 0 1 1 71.661 71.507 3 7.6208E-18 23668 20211116_3442_TMUAki_TMT10x_S_F4 140.17 123.29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1794 61 1681 10518 12665 12665 1 ASLPGVK Unmodified 670.40138 0.40137537 792 P24534 EEF1B2 Elongation factor 1-beta yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.756 2 3 2 3 4 38.889 39.206 2 0.0071368 11170 20211116_3435_TMUAki_TMT10x_P_F7 101.69 38.977 5536300 9026900 29094 8402600 7960600 8196300 6365700 5173500 5720600 5042600 6886600 5155000 8420700 519070 8613100 7594600 8294700 6520400 5408700 5889300 4930200 6607100 7 7 5 7 7 7 7 7 7 7 7 3537500 5729300 17275 5219100 5971000 6467600 4159400 3365500 3668500 3277000 4366100 3293900 5344100 343470 5379000 5680700 6442100 4298600 3575700 3778300 3204200 4190200 3 3 3 3 3 3 3 3 3 3 3 1998800 3297600 11820 3183600 1989700 1728700 2206300 1808000 2052100 1765600 2520500 1861100 3076600 175600 3234100 1913900 1852600 2221800 1833000 2111000 1726100 2416900 4 4 2 4 4 4 4 4 4 4 4 280560000 186460000 94099000 1795 792 1682 10519;10520;10521;10522;10523;10524;10525 12666;12667;12668;12669;12670;12671;12672;12673 12667 8 ASLPGVKK Unmodified 798.49634 0.49633839 792 P24534 EEF1B2 Elongation factor 1-beta yes yes 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 36.702 36.557 3 0.0059041 10567 20211116_3439_TMUAki_TMT10x_S_F1 72.879 34.103 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1796 792 1683 10526;10527 12674;12675 12675 2 ASLPTLGFTHFQPAQLTTVGK Unmodified 2213.1845 0.18445331 875 P30566;P30566-2 ADSL Adenylosuccinate lyase yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 72.428 72.378 3 5.3571E-20 24039 20211116_3442_TMUAki_TMT10x_S_F4 157.57 145.84 19466000 33519000 281320 30321000 21887000 25192000 22577000 19213000 17292000 20066000 23740000 18126000 31265000 1867100 31081000 21018000 25846000 22701000 19862000 18052000 19563000 22701000 5 5 3 5 5 5 5 5 5 5 5 5051400 7759300 0 6929400 4955100 8832400 5237300 5271100 4566400 5135400 5735100 4703200 7237200 403750 7156200 4757400 8800500 5276900 5534900 4716300 5021100 5496200 1 1 0 1 1 1 1 1 1 1 1 14414000 25760000 281320 23391000 16932000 16360000 17340000 13942000 12726000 14931000 18005000 13423000 24028000 1463400 23925000 16261000 17045000 17424000 14327000 13335000 14542000 17205000 4 4 3 4 4 4 4 4 4 4 4 1454400000 857260000 597160000 1797 875 1684 10528;10529 12676;12677;12678;12679;12680 12678 5 ASLPTLGFTHFQPAQLTTVGKR Unmodified 2369.2856 0.28556434 875 P30566;P30566-2 ADSL Adenylosuccinate lyase yes no 0 0 0 1 By MS/MS By MS/MS 6 0.707 1 2 1 2 2 63.608 63.752 4 2.1014E-20 19505 20211116_3445_TMUAki_TMT10x_S_F6 158.44 148.29 35739000 60849000 328390 52191000 43410000 45812000 41480000 34066000 31839000 38640000 39884000 33276000 56746000 2927700 53760000 41566000 46800000 41877000 35366000 33098000 37549000 38226000 4 4 2 4 4 4 4 4 4 4 4 8416800 14157000 212430 11274000 7910800 15064000 8902300 7916400 7550700 8901500 9068200 7838500 13199000 888700 11762000 7623100 14952000 8936300 8439100 7794500 8653100 8700700 1 1 1 1 1 1 1 1 1 1 1 27322000 46692000 115960 40917000 35499000 30748000 32578000 26150000 24288000 29738000 30816000 25437000 43547000 2039000 41998000 33943000 31848000 32941000 26927000 25303000 28896000 29525000 3 3 1 3 3 3 3 3 3 3 3 6079800000 3009500000 3070200000 1798 875 1685 10530;10531;10532;10533 12681;12682;12683;12684 12683 4 ASLPYSQISGLNALQLR Unmodified 1829.9999 0.99994701 2548 Q96S52;Q96S52-2 PIGS GPI transamidase component PIG-S yes no 0 0 0 0 By MS/MS By MS/MS 3.2 0.4 4 1 2 3 74.53 74.343 2;3 8.9646E-36 25978 20211116_3430_TMUAki_TMT10x_P_F3 210.91 153.56 5734300 9643700 121240 8940900 6264600 8056100 6520400 5578700 4977400 5542900 6670400 5340100 8996000 595830 9157600 6020500 8205900 6552700 5796000 5191300 5414900 6382300 4 4 4 4 4 4 4 4 4 4 4 2916100 4809000 23383 4155100 2807600 5037900 3435500 2661500 2447000 2906000 3446600 2715300 4484900 262040 4298300 2709200 5024500 3421400 2833200 2568100 2828100 3293900 2 2 2 2 2 2 2 2 2 2 2 2818200 4834700 97856 4785800 3457000 3018200 3084800 2917300 2530400 2636800 3223800 2624800 4511100 333800 4859300 3311300 3181500 3131400 2962800 2623100 2586800 3088500 2 2 2 2 2 2 2 2 2 2 2 1548300000 767000000 781330000 1799 2548 1686 10534;10535;10536;10537;10538 12685;12686;12687;12688 12686 4 ASLSLAPVNIFK Acetyl (Protein N-term) 1300.7391 0.73908786 1429 P78371 CCT2 T-complex protein 1 subunit beta yes yes 1 0 0 0 By MS/MS By MS/MS 3.63 2.6 8 14 1 2 2 2 3 6 14 24 60.969 60.938 2;3 9.7144E-17 26692 20211116_3428_TMUAki_TMT10x_P_F1 145.92 121 173090000 281320000 704380 259380000 201970000 245080000 209040000 165450000 159230000 180540000 212660000 161150000 262420000 12969000 265950000 193720000 248760000 210120000 172690000 166060000 175700000 203490000 45 45 25 45 45 45 45 45 45 45 45 76011000 117230000 215900 108790000 70108000 132340000 83747000 71795000 70623000 78940000 91715000 70773000 109350000 6094700 111930000 67557000 132000000 83829000 76266000 73170000 76802000 87821000 11 11 5 11 11 11 11 11 11 11 11 97083000 164090000 488480 150590000 131870000 112740000 125290000 93657000 88605000 101600000 120950000 90381000 153060000 6873800 154020000 126170000 116760000 126290000 96425000 92893000 98903000 115670000 34 34 20 34 34 34 34 34 34 34 34 114200000000 56524000000 57680000000 1800 1429 1687 10539;10540;10541;10542;10543;10544;10545;10546;10547;10548;10549;10550;10551;10552;10553;10554;10555;10556;10557;10558;10559;10560;10561;10562;10563;10564;10565;10566;10567;10568;10569;10570;10571;10572;10573;10574;10575;10576 12689;12690;12691;12692;12693;12694;12695;12696;12697;12698;12699;12700;12701;12702;12703;12704;12705;12706;12707;12708;12709;12710;12711;12712;12713;12714;12715;12716;12717;12718;12719;12720;12721;12722;12723;12724;12725;12726;12727;12728;12729;12730;12731;12732;12733;12734;12735;12736;12737;12738;12739;12740 12689 52 ASLSLIEK Unmodified 859.50148 0.50148335 1172 P52292 KPNA2 Importin subunit alpha-1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.8 0.748 2 2 1 3 2 53.664 53.827 2 0.00043998 15379 20211116_3445_TMUAki_TMT10x_S_F6 149.65 82.621 26580000 39763000 110680 40011000 30742000 30040000 26380000 30595000 31070000 27791000 32352000 24748000 37104000 2225500 40651000 29365000 31230000 27132000 30995000 31449000 27257000 31169000 3 3 1 3 3 3 3 3 3 3 3 8099700 11277000 0 11441000 13048000 15311000 9824600 10917000 11220000 9574700 10517000 7540800 10523000 634990 11718000 12424000 15260000 10177000 11281000 11329000 9406400 10167000 1 1 0 1 1 1 1 1 1 1 1 18481000 28486000 110680 28569000 17693000 14729000 16556000 19678000 19850000 18216000 21835000 17208000 26581000 1590500 28933000 16941000 15970000 16954000 19714000 20120000 17851000 21002000 2 2 1 2 2 2 2 2 2 2 2 1298100000 390910000 907230000 1801 1172 1688 10577;10578;10579;10580;10581 12741;12742;12743;12744;12745 12745 5 ASLTLFCPEEGDWK Unmodified 1651.7552 0.75520821 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.18 0.936 3 4 3 1 5 6 75.833 75.822 2;3 2.5351E-35 24978 20211116_3431_TMUAki_TMT10x_P_F4 224.42 201.89 38393000 61185000 446000 64161000 43778000 41751000 46331000 20535000 18548000 25504000 41754000 35750000 57103000 3544700 64909000 42059000 43439000 46002000 22098000 20908000 24704000 39560000 11 11 7 11 11 11 11 11 11 11 11 16294000 25137000 46829 26139000 18196000 24218000 21207000 8928800 8033900 11392000 17351000 15171000 23459000 1313000 26566000 17519000 24447000 20946000 9923500 9080200 11025000 16450000 4 4 1 4 4 4 4 4 4 4 4 22099000 36047000 399170 38022000 25582000 17533000 25123000 11606000 10514000 14112000 24403000 20579000 33643000 2231700 38343000 24540000 18992000 25055000 12175000 11828000 13679000 23110000 7 7 6 7 7 7 7 7 7 7 7 4103500000 1607300000 2496300000 1802 1057 1689 10582;10583;10584;10585;10586;10587;10588;10589;10590;10591;10592 12746;12747;12748;12749;12750;12751;12752;12753;12754;12755;12756;12757;12758 12747 13 ASLVALPEQTASEEETPPPLLTK Unmodified 2420.2686 0.26863645 3160 Q9UKV3;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 2 4 4 2 75.781 75.803 3;4 3.5262E-11 24125 20211116_3444_TMUAki_TMT10x_S_F5 109.05 91.347 6766000 11939000 160090 10393000 8035700 10462000 8515500 9233900 8871500 9001200 9172000 6300900 11134000 715130 10713000 7725900 10626000 8623600 9443400 9020300 8800600 8838600 5 5 4 5 5 5 5 5 5 5 5 2783500 4422800 86695 3994800 2653200 5586200 3605700 3429100 3342100 3354500 3480100 2592300 4125400 309740 4129300 2573200 5544200 3599500 3593100 3416500 3279200 3352800 2 2 2 2 2 2 2 2 2 2 2 3982600 7515800 73399 6398500 5382500 4875600 4909800 5804800 5529400 5646700 5691900 3708600 7008900 405390 6583600 5152700 5081800 5024100 5850300 5603800 5521400 5485700 3 3 2 3 3 3 3 3 3 3 3 1333200000 933180000 400060000 1803 3160 1690 10593;10594;10595;10596;10597;10598 12759;12760;12761;12762;12763;12764 12763 6 ASLYPCPETPQER Unmodified 1546.7086 0.70859237 2390 Q93050;Q93050-1;Q93050-3 ATP6V0A1 V-type proton ATPase 116 kDa subunit a isoform 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 40.461 40.516 2 2.2604E-14 12073 20211116_3430_TMUAki_TMT10x_P_F3 167.11 149.06 88059 152280 4519.5 205630 342150 280970 164470 136820 155960 129570 164410 82025 142290 15071 207140 323870 278350 175850 146170 159340 126850 158340 1 1 1 1 1 1 1 1 1 1 1 88059 152280 4519.5 205630 342150 280970 164470 136820 155960 129570 164410 82025 142290 15071 207140 323870 278350 175850 146170 159340 126850 158340 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9059400 9059400 0 1804 2390 1691 10599 12765 12765 1 ASMGTLAFDEYGRPFLIIK Acetyl (Protein N-term);Oxidation (M) 2186.1082 0.10817683 1079 P48643 CCT5 T-complex protein 1 subunit epsilon yes yes 1 0 1 1 By MS/MS By MS/MS 6 1.21 2 1 4 3 1 4 7 79.213 79.217 2;3 9.639E-18 25787 20211116_3445_TMUAki_TMT10x_S_F6 119.4 107.24 39077000 62430000 448250 61623000 43246000 56339000 49558000 35699000 38506000 44039000 49263000 36385000 58250000 2600200 62844000 41632000 57256000 49596000 37587000 40039000 42667000 47190000 8 8 2 8 8 8 8 8 8 8 8 17218000 25881000 448250 28008000 14911000 28157000 18637000 15951000 15494000 17875000 20288000 16034000 24158000 1725600 28425000 14413000 28401000 18612000 16892000 16070000 17378000 19423000 4 4 2 4 4 4 4 4 4 4 4 21859000 36548000 0 33615000 28335000 28181000 30921000 19748000 23013000 26164000 28975000 20352000 34093000 874660 34419000 27220000 28855000 30984000 20696000 23969000 25289000 27766000 4 4 0 4 4 4 4 4 4 4 4 13013000000 4748700000 8264500000 1805 1079 1692 10600;10601;10602;10603;10604;10605;10606;10607;10608;10609;10610 12766;12767;12768;12769;12770;12771;12772;12773;12774;12775 12772 1402 10 ASMQPIQIAEGTGITTR Oxidation (M) 1788.904 0.90399771 1741 Q14980;Q14980-2;Q14980-5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 1 0 By MS/MS By MS/MS 5.25 0.433 3 1 2 2 48.248 48.42 2;3 1.2652E-10 14042 20211116_3433_TMUAki_TMT10x_P_F5 133.04 109.01 3278900 5993100 99587 5830600 5959500 7520000 4732700 5290700 4955400 4743100 5198000 3053600 5591600 395860 5984900 5689000 7506500 4871600 5475400 5040100 4654900 5006800 3 3 2 3 3 3 3 3 3 3 3 2016300 3863000 58754 3681600 4888900 6528800 3649600 3466900 3412400 3302700 3465600 1877800 3603900 255820 3811200 4659700 6406700 3759400 3674500 3483800 3232400 3341500 2 2 1 2 2 2 2 2 2 2 2 1262600 2130100 40834 2149000 1070600 991160 1083100 1823800 1543000 1440400 1732400 1175900 1987700 140040 2173700 1029300 1099900 1112200 1800800 1556300 1422500 1665300 1 1 1 1 1 1 1 1 1 1 1 736560000 511730000 224820000 1806 1741 1693 10611;10612;10613;10614 12776;12777;12778;12779 12777 2348 4 ASMSEFLESEDGEVEQQR Oxidation (M) 2085.8797 0.87969303 1755 Q15022 SUZ12 Polycomb protein SUZ12 yes yes 0 0 1 0 By MS/MS 1 0 1 1 45.48 45.258 3 3.0646E-31 14148 20211116_3439_TMUAki_TMT10x_S_F1 183.31 167.09 286290 478360 11395 597530 250040 235260 213110 523230 528870 410630 498730 266650 446800 33847 595740 239510 268490 227870 514080 523140 405680 482040 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 286290 478360 11395 597530 250040 235260 213110 523230 528870 410630 498730 266650 446800 33847 595740 239510 268490 227870 514080 523140 405680 482040 1 1 1 1 1 1 1 1 1 1 1 63975000 0 63975000 1807 1755 1694 10615 12780 12780 2368 1 ASNGDAWVEAHGK Unmodified 1340.6109 0.61092723 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 34.646 34.747 3 8.0883E-05 8362 20211116_3431_TMUAki_TMT10x_P_F4 93.243 75.876 1165100 1909500 10273 2289800 3633100 2080200 1656900 1063100 1105700 1011100 1707200 1084900 1783200 140730 2306000 3434500 2109300 1766900 1130700 1170300 989630 1628200 2 2 2 2 2 2 2 2 2 2 2 905090 1510200 10087 1826400 3423700 1894000 1391800 806830 831440 772510 1370200 842800 1410300 119710 1841900 3232400 1900900 1500700 874170 889480 755890 1305100 1 1 1 1 1 1 1 1 1 1 1 259980 399330 186.36 463380 209320 186220 265070 256290 274270 238580 337010 242070 372850 21018 464060 202120 208380 266240 256510 280850 233740 323160 1 1 1 1 1 1 1 1 1 1 1 154650000 136910000 17745000 1808 972 1695 10616;10617 12781;12782 12781 2 ASNIKAPGEQTVPALNLQNAFR Unmodified 2338.2393 0.23934243 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 0 1 By MS/MS By MS/MS 1.75 0.433 1 3 2 2 61.736 61.547 3;4 1.2064E-44 19016 20211116_3440_TMUAki_TMT10x_S_F2 207.17 181.34 15807000 30402000 40484 18991000 22160000 25053000 17771000 36510000 33576000 32251000 27335000 14717000 28326000 1076100 20271000 21133000 25405000 18744000 36415000 33245000 31673000 26562000 5 5 2 5 5 5 5 5 5 5 5 3038400 4884500 0 3627300 3551900 5972800 4409600 5397300 5739900 4840700 3705800 2829100 4553000 0 3824300 3427300 5927100 4469200 5500000 5708900 4750600 3637800 1 1 0 1 1 1 1 1 1 1 1 12769000 25518000 40484 15364000 18608000 19080000 13361000 31113000 27836000 27410000 23629000 11888000 23773000 1076100 16446000 17706000 19478000 14275000 30915000 27536000 26923000 22924000 4 4 2 4 4 4 4 4 4 4 4 4438000000 1878800000 2559200000 1809 3317 1696 10618;10619;10620;10621 12783;12784;12785;12786;12787 12785 5 ASNLENSTYDLYTIPK Unmodified 1827.8891 0.88905915 1207 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 By MS/MS By MS/MS 5.25 0.829 1 1 2 1 3 64.925 64.931 3 4.1365E-08 19969 20211116_3445_TMUAki_TMT10x_S_F6 118.47 102.16 5984900 10839000 99082 10652000 6819500 5846500 5596400 7448800 7614900 7377600 8051100 5573200 10114000 600220 10808000 6514100 6288400 5803100 7490400 7674000 7208200 7753100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5984900 10839000 99082 10652000 6819500 5846500 5596400 7448800 7614900 7377600 8051100 5573200 10114000 600220 10808000 6514100 6288400 5803100 7490400 7674000 7208200 7753100 2 2 2 2 2 2 2 2 2 2 2 1079700000 0 1079700000 1810 1207 1697 10622;10623;10624;10625 12788;12789;12790;12791 12791 4 ASNLQDLVYK Unmodified 1149.603 0.60298831 423 O95347;O95347-2 SMC2 Structural maintenance of chromosomes protein 2 yes no 0 0 0 0 By MS/MS 6 0 1 1 56.855 56.913 2 0.0030343 16659 20211116_3445_TMUAki_TMT10x_S_F6 77.533 25.679 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1811 423 1698 10626 12792 12792 1 ASNTAEVFFDGVR Unmodified 1411.6732 0.67319314 1115 P49748;P49748-2;P49748-3 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 58.779 58.527 2 0.0401 18402 20211116_3442_TMUAki_TMT10x_S_F4 58.595 43.023 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1812 1115 1699 10627;10628 12793;12794 12794 2 ASPAFDYAEFEPHIVPSTK Unmodified 2105.0106 0.010571271 1812 Q15527 SURF2 Surfeit locus protein 2 yes yes 0 0 0 0 By MS/MS 6 0 1 1 67.271 67.245 3 3.6758E-06 20554 20211116_3434_TMUAki_TMT10x_P_F6 87.16 70.082 2176900 3623300 0 3162300 2068500 4644000 2543300 2603700 2613700 2807800 2697600 2026400 3379200 117930 3280800 1991300 4593800 2557200 2756300 2658900 2733800 2599700 1 1 0 1 1 1 1 1 1 1 1 2176900 3623300 0 3162300 2068500 4644000 2543300 2603700 2613700 2807800 2697600 2026400 3379200 117930 3280800 1991300 4593800 2557200 2756300 2658900 2733800 2599700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 354980000 354980000 0 1813 1812 1700 10629 12795 12795 1 ASPAGTAGGPGAGAAAGGTGPLAAR Unmodified 1962.9872 0.98715049 1580 Q12962 TAF10 Transcription initiation factor TFIID subunit 10 yes yes 0 0 0 0 By MS/MS 6 0 2 2 34.263 34.238 3 6.1944E-13 7418 20211116_3434_TMUAki_TMT10x_P_F6 106.93 91.405 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1814 1580 1701 10630;10631 12796;12797 12797 2 ASPATQPPPLLPPSATGPDATVGGPAPTPLLPPSATASVK Unmodified 3725.988 0.98799192 1538 Q07666;Q07666-3 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3 2.35 5 15 4 5 20 9 45.943 45.861 3;4;5 7.3232E-05 27193 20211116_3439_TMUAki_TMT10x_S_F1 60.312 54.281 40354000 64005000 223310 58620000 47499000 70098000 47900000 49678000 44155000 46945000 53083000 37572000 59704000 2957300 60354000 45541000 70244000 48451000 51458000 45401000 45962000 50930000 34 34 11 34 34 34 34 34 34 34 34 26339000 41996000 124680 38271000 27392000 51680000 30423000 30361000 27311000 29839000 32679000 24523000 39173000 1847800 39506000 26329000 51342000 30605000 31929000 28111000 29164000 31358000 25 25 7 25 25 25 25 25 25 25 25 14015000 22009000 98632 20349000 20107000 18418000 17477000 19317000 16844000 17106000 20403000 13049000 20531000 1109600 20848000 19212000 18902000 17846000 19529000 17290000 16798000 19572000 9 9 4 9 9 9 9 9 9 9 9 32070000000 18760000000 13310000000 1815 1538 1702 10632;10633;10634;10635;10636;10637;10638;10639;10640;10641;10642;10643;10644;10645;10646;10647;10648;10649;10650;10651;10652;10653;10654;10655;10656;10657;10658;10659;10660 12798;12799;12800;12801;12802;12803;12804;12805;12806;12807;12808;12809;12810;12811;12812;12813;12814;12815;12816;12817;12818;12819;12820;12821;12822;12823;12824;12825;12826;12827;12828;12829 12824 32 ASPESQEPLIQLVQAFVR Unmodified 2011.0738 0.07384023 1929 Q5SRE5;Q5SRE5-2 NUP188 Nucleoporin NUP188 homolog yes no 0 0 0 0 By MS/MS By MS/MS 7.25 0.829 2 2 4 4 4 82.004 82.012 2;3 6.4874E-90 27225 20211116_3436_TMUAki_TMT10x_P_F8 318.32 275.58 5520700 9024300 106350 8734100 5947800 7848700 6716000 4829100 4499300 5062200 6415500 5141100 8419600 479040 8917500 5728400 7982500 6703500 5069300 4742300 4934400 6129500 9 9 6 9 9 9 9 9 9 9 9 2974700 4807900 66968 4582500 2603300 5022000 3191600 2489800 2346700 2635500 3281500 2770300 4485400 226450 4697400 2515000 5032100 3180500 2663600 2457500 2568000 3136600 4 4 2 4 4 4 4 4 4 4 4 2546000 4216400 39387 4151600 3344600 2826700 3524300 2339300 2152700 2426700 3134000 2370800 3934100 252590 4220100 3213400 2950400 3523000 2405700 2284800 2366500 2992900 5 5 4 5 5 5 5 5 5 5 5 1425400000 627500000 797940000 1816 1929 1703 10661;10662;10663;10664;10665;10666;10667;10668 12830;12831;12832;12833;12834;12835;12836;12837;12838 12833 9 ASPFLLQYIQEEIPDYR Unmodified 2081.047 0.046956778 259 O60256;O60256-4;O60256-2;O60256-3 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 5.75 1.3 1 2 2 3 4 4 80.324 80.324 3 2.0224E-15 28394 20211116_3446_TMUAki_TMT10x_S_F7 144.73 134.57 13026000 19290000 277860 20328000 14921000 12958000 15520000 7817400 7088500 8898700 13118000 12130000 18003000 1365400 20554000 14338000 13540000 15450000 8240000 7794200 8646400 12468000 6 6 6 6 6 6 6 6 6 6 6 3309900 5153300 112840 5670000 3154000 5411800 3528600 2903400 2559700 3019000 3546300 3082700 4810500 377400 5744000 3040400 5472700 3529600 3082000 2681500 2943700 3390500 2 2 2 2 2 2 2 2 2 2 2 9715900 14137000 165020 14658000 11767000 7546100 11991000 4914100 4528800 5879700 9571600 9047700 13193000 988030 14810000 11298000 8067000 11921000 5158000 5112800 5702700 9077200 4 4 4 4 4 4 4 4 4 4 4 2908200000 1201300000 1706900000 1817 259 1704 10669;10670;10671;10672;10673;10674;10675;10676 12839;12840;12841;12842;12843;12844;12845;12846;12847;12848 12847 10 ASPFLLQYIQEEIPNYR Unmodified 2080.0629 0.062941193 1714 Q14558;Q14558-2 PRPSAP1 Phosphoribosyl pyrophosphate synthase-associated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 80.013 80.008 3 6.1298E-11 26412 20211116_3436_TMUAki_TMT10x_P_F8 125.98 103.1 3527900 6280600 11073 5849400 4055300 5338700 4522500 3685600 3528100 4090200 4592100 3284800 5858900 288980 5990200 3899400 5433100 4532100 3842800 3670500 3978000 4396900 2 2 1 2 2 2 2 2 2 2 2 1838500 3016600 11073 3034200 1645500 3351400 2347800 1667600 1884700 2063500 2333000 1711900 2814900 160040 3098900 1596100 3356800 2330400 1792300 1953500 1999000 2236700 1 1 1 1 1 1 1 1 1 1 1 1689500 3264000 0 2815200 2409700 1987300 2174700 2018000 1643400 2026700 2259100 1572900 3044000 128940 2891300 2303300 2076300 2201700 2050500 1717000 1979000 2160200 1 1 0 1 1 1 1 1 1 1 1 1695800000 1015100000 680660000 1818 1714 1705 10677;10678 12849;12850 12849 2 ASPLTHSPPDEL Unmodified 1262.6143 0.61428128 2654 Q9BT09 CNPY3 Protein canopy homolog 3 yes yes 0 0 0 0 By MS/MS 3 0 1 1 43.745 43.419 2 1.5309E-05 14427 20211116_3441_TMUAki_TMT10x_S_F3 103.87 85.141 516470 927990 339.2 1212700 468810 433100 392090 1040500 1067500 768560 968200 480890 866980 42467 1205400 447600 502950 422630 1019100 1052900 761820 937060 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 516470 927990 339.2 1212700 468810 433100 392090 1040500 1067500 768560 968200 480890 866980 42467 1205400 447600 502950 422630 1019100 1052900 761820 937060 1 1 1 1 1 1 1 1 1 1 1 26081000 0 26081000 1819 2654 1706 10679 12851 12851 1 ASPNTPPGRVDENGPELLPR Unmodified 2115.0709 0.070880117 2350 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 1 By MS/MS 4 0.816 1 1 1 3 42.082 42.089 3 2.4904E-09 11551 20211116_3442_TMUAki_TMT10x_S_F4 116.48 81.525 1844300 3009300 32158 3861200 1523300 1166700 1245200 2211100 1850700 2024900 2710100 1717500 2811200 178380 3838600 1455500 1378200 1296400 2189800 1886800 1985300 2587700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1844300 3009300 32158 3861200 1523300 1166700 1245200 2211100 1850700 2024900 2710100 1717500 2811200 178380 3838600 1455500 1378200 1296400 2189800 1886800 1985300 2587700 2 2 2 2 2 2 2 2 2 2 2 189750000 0 189750000 1820 2350 1707 10680;10681;10682 12852;12853 12852 2 ASPPSLEQPYLTHR Unmodified 1594.8104 0.81035532 174 O15213 WDR46 WD repeat-containing protein 46 yes yes 0 0 0 0 By MS/MS 6 0 1 1 39.811 39.975 3 0.0061385 9620 20211116_3445_TMUAki_TMT10x_S_F6 58.885 44.324 354940 628430 9739.8 698980 338520 324550 339690 431940 468210 398110 561780 330560 586660 38119 702490 325200 356140 348480 432730 474020 390210 539040 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 354940 628430 9739.8 698980 338520 324550 339690 431940 468210 398110 561780 330560 586660 38119 702490 325200 356140 348480 432730 474020 390210 539040 2 2 1 2 2 2 2 2 2 2 2 39738000 0 39738000 1821 174 1708 10683 12854;12855 12854 2 ASQGSTLVHPFR Unmodified 1298.6731 0.67313356 1424 P78316;P78316-2 NOP14 Nucleolar protein 14 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 34.372 34.367 3 4.9091E-07 9670 20211116_3439_TMUAki_TMT10x_S_F1 120.87 87.784 428780 696510 9281.9 802400 766130 660460 488900 608670 605830 480430 653530 399300 650310 48924 808980 728200 680430 514030 617630 612900 474500 628960 2 2 2 2 2 2 2 2 2 2 2 198260 309320 4510.3 342690 536180 479260 278250 285050 278560 215640 317050 184630 288760 25373 349290 507900 475450 295740 297550 284740 213470 304660 1 1 1 1 1 1 1 1 1 1 1 230520 387180 4771.7 459720 229950 181210 210650 323620 327270 264790 336480 214670 361560 23551 459700 220290 204980 218290 320080 328160 261030 324300 1 1 1 1 1 1 1 1 1 1 1 57378000 41332000 16047000 1822 1424 1709 10684;10685 12856;12857 12857 2 ASQKPQPNFPSPEYMIFDHEFTK Oxidation (M) 2753.2796 0.27955226 288 O60763;O60763-2 USO1 General vesicular transport factor p115 yes no 0 0 1 1 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 61.625 61.853 4 2.4771E-15 18927 20211116_3436_TMUAki_TMT10x_P_F8 129.32 121.13 11664000 20899000 242570 18583000 14882000 19835000 14441000 18568000 19240000 18538000 17254000 10862000 19492000 1238100 19140000 14273000 20101000 14820000 18942000 19293000 18106000 16705000 4 4 4 4 4 4 4 4 4 4 4 2811900 5253400 97631 4284700 3168600 7438000 3770700 4784000 5243700 4768400 4049300 2618900 4898400 329110 4486700 3059200 7323200 3838900 4997500 5227800 4657700 3943200 1 1 1 1 1 1 1 1 1 1 1 8851900 15645000 144940 14298000 11713000 12397000 10670000 13784000 13996000 13769000 13204000 8243100 14593000 909040 14653000 11214000 12778000 10981000 13944000 14065000 13448000 12762000 3 3 3 3 3 3 3 3 3 3 3 2499600000 871010000 1628600000 1823 288 1710 10686;10687;10688 12858;12859;12860;12861 12858 223 4 ASQNLVVLAR Unmodified 1069.6244 0.62439245 2802 Q9H3U1;Q9H3U1-2 UNC45A Protein unc-45 homolog A yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 43.313 43.406 2 0.0040713 10885 20211116_3447_TMUAki_TMT10x_S_F8 78.61 44.298 4211800 6997800 35537 6708500 5829000 5790400 4503300 5033800 5232600 4284400 6011600 3921900 6528600 404960 6850500 5557900 5938500 4659800 5133800 5319000 4215300 5775100 2 2 2 2 2 2 2 2 2 2 2 1957600 3091900 18203 2917200 3810600 3840900 2424300 2266500 2343400 1810900 2794800 1822900 2884400 205220 3002200 3620000 3820500 2529100 2370200 2403600 1787400 2682000 1 1 1 1 1 1 1 1 1 1 1 2254200 3906000 17335 3791300 2018400 1949400 2079000 2767300 2889200 2473500 3216900 2099000 3644200 199740 3848300 1937900 2117900 2130700 2763600 2915400 2427800 3093000 1 1 1 1 1 1 1 1 1 1 1 108400000 53585000 54820000 1824 2802 1711 10689;10690 12862;12863 12863 2 ASQNRDPAATSVAAAR Acetyl (Protein N-term) 1626.8074 0.80739521 108 O00762;O00762-3;O00762-4 UBE2C Ubiquitin-conjugating enzyme E2 C yes no 1 0 0 1 By MS/MS By matching 2.33 0.471 2 1 2 1 29.002 28.755 2;3 1.1175E-60 7022 20211116_3429_TMUAki_TMT10x_P_F2 142.97 94.877 133450 224380 458.56 196890 202540 241110 162150 120120 144210 133070 180100 124260 209270 9155.5 203460 193210 240180 166040 128620 148770 129430 172630 2 2 1 2 2 2 2 2 2 2 2 133450 224380 458.56 196890 202540 241110 162150 120120 144210 133070 180100 124260 209270 9155.5 203460 193210 240180 166040 128620 148770 129430 172630 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24533000 18528000 6005600 1825 108 1712 10691;10692;10693 12864;12865 12864 2 ASQSQGIQQLLQAEK Acetyl (Protein N-term) 1669.8635 0.8635131 324 O75348;O95670;O95670-2 ATP6V1G1;ATP6V1G2 V-type proton ATPase subunit G 1;V-type proton ATPase subunit G 2 yes no 1 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 72.749 72.615 2 1.2743E-19 24148 20211116_3442_TMUAki_TMT10x_S_F4 131.83 109.7 1680300 3065700 0 2758400 1755300 1606900 1663600 1630200 1617500 1801800 2140800 1564200 2859500 99330 2818500 1678100 1708600 1690900 1661500 1666100 1752700 2048900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1680300 3065700 0 2758400 1755300 1606900 1663600 1630200 1617500 1801800 2140800 1564200 2859500 99330 2818500 1678100 1708600 1690900 1661500 1666100 1752700 2048900 1 1 0 1 1 1 1 1 1 1 1 288590000 0 288590000 1826 324 1714 10694;10695 12866;12867 12867 2 ASRDEIFAQSK Unmodified 1250.6255 0.62551466 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.083 35.185 3 4.4927E-13 8817 20211116_3433_TMUAki_TMT10x_P_F5 145.06 93.136 1584300 2466700 19795 2848400 4086400 2840700 1978400 2038800 2023900 1649000 2369500 1475300 2303100 184840 2878700 3866500 2876300 2118400 2101700 2069200 1626600 2275100 2 2 2 2 2 2 2 2 2 2 2 1118500 1701100 15634 1953700 3523900 2395500 1453600 1408100 1335900 1144600 1609200 1041600 1588200 140990 1981800 3327800 2391000 1579000 1473600 1373900 1128700 1543900 1 1 1 1 1 1 1 1 1 1 1 465760 765600 4160.6 894680 562490 445130 524880 630710 688040 504460 760250 433700 714860 43847 896880 538650 485370 539430 628120 695380 497890 731150 1 1 1 1 1 1 1 1 1 1 1 74068000 46057000 28011000 1827 935 1715 10696;10697;10698 12868;12869;12870 12869 3 ASREEILAQAK Unmodified 1214.6619 0.66190017 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 34.518 34.583 3 2.513E-07 8336 20211116_3431_TMUAki_TMT10x_P_F4 106.79 79.164 668270 1115100 0 1168200 646060 509660 742410 719970 753640 637440 937550 622210 1040700 53207 1178200 621770 564550 748370 718930 772740 625950 898730 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 668270 1115100 0 1168200 646060 509660 742410 719970 753640 637440 937550 622210 1040700 53207 1178200 621770 564550 748370 718930 772740 625950 898730 1 1 0 1 1 1 1 1 1 1 1 118880000 75993000 42885000 1828 934 1716 10699;10700;10701 12871;12872 12871 2 ASSDIQVK Acetyl (Protein N-term) 888.45526 0.45526144 698 P16949;P16949-2 STMN1 Stathmin yes no 1 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 40.074 39.965 2 0.0031431 11695 20211116_3430_TMUAki_TMT10x_P_F3 58.119 37.837 3328200 5549400 904.74 5819500 6483100 7099400 4610200 4025800 3871500 3726300 4551000 3098400 5179200 259850 5936900 6165300 7084400 4751400 4239300 3995000 3651600 4369100 2 2 1 2 2 2 2 2 2 2 2 3328200 5549400 904.74 5819500 6483100 7099400 4610200 4025800 3871500 3726300 4551000 3098400 5179200 259850 5936900 6165300 7084400 4751400 4239300 3995000 3651600 4369100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 237440000 237440000 0 1829 698 1717 10702;10703;10704;10705 12873;12874;12875;12876 12874 4 ASSEGTIPQVQREEPAPEEEEPLLLQRPER Unmodified 3413.7063 0.70629077 2695 Q9BVJ6;Q9BVJ6-3;Q9BVJ6-2 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 0 0 0 2 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 50.603 50.407 4 1.6195E-147 17259 20211116_3441_TMUAki_TMT10x_S_F3 332.68 310.36 4524700 9009700 48941 9094900 5800900 7627100 4911500 8794400 7919700 7133900 7590300 4213200 8407300 425730 9250300 5541900 7886700 5121600 8833000 7913600 7035800 7332300 6 6 3 6 6 6 6 6 6 6 6 1271600 2633900 24132 2531200 2150800 4288300 2305100 2888700 2369500 2145300 2221300 1184200 2457300 140230 2615800 2067600 4228800 2332000 2985400 2402500 2125800 2147400 1 1 1 1 1 1 1 1 1 1 1 3253100 6375800 24809 6563600 3650100 3338800 2606500 5905700 5550200 4988700 5369100 3029000 5950000 285500 6634500 3474300 3657900 2789600 5847500 5511100 4910000 5184900 5 5 2 5 5 5 5 5 5 5 5 1330300000 514610000 815670000 1830 2695 1718 10706;10707;10708;10709 12877;12878;12879;12880;12881;12882 12881 6 ASSGLLYPLER Unmodified 1204.6452 0.64518747 1550 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 55.427 55.652 2 1.3121E-05 16134 20211116_3445_TMUAki_TMT10x_S_F6 115.42 66.001 35922000 62279000 533290 67404000 48550000 57410000 39792000 52920000 54186000 48484000 52884000 33450000 58132000 3599200 68251000 46361000 59001000 41266000 53899000 54449000 47534000 51056000 5 5 4 5 5 5 5 5 5 5 5 12203000 21346000 127040 23155000 24281000 35016000 18810000 21363000 20256000 18160000 19492000 11363000 19924000 1246500 23671000 23148000 34634000 19410000 22314000 20516000 17868000 18827000 3 3 2 3 3 3 3 3 3 3 3 23719000 40933000 406250 44249000 24269000 22394000 20982000 31557000 33930000 30323000 33392000 22088000 38207000 2352800 44580000 23213000 24367000 21856000 31586000 33932000 29666000 32229000 2 2 2 2 2 2 2 2 2 2 2 3044200000 1701000000 1343200000 1831 1550 1719 10710;10711;10712;10713;10714;10715 12883;12884;12885;12886;12887;12888;12889 12888 7 ASSRLENLGIPEEELLR Unmodified 1925.0218 0.02180466 1485 Q01658 DR1 Protein Dr1 yes yes 0 0 0 1 By MS/MS 3 1 1 1 2 59.798 59.626 3 0.0071925 18831 20211116_3442_TMUAki_TMT10x_S_F4 58.29 39.457 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1832 1485 1720 10716;10717 12890;12891 12891 2 ASSSAGNLGVLIPVIAVLTR Unmodified 1937.131 0.13096118 1013 P42356 PI4KA Phosphatidylinositol 4-kinase alpha yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 81.975 81.974 3 6.1315E-07 26924 20211116_3445_TMUAki_TMT10x_S_F6 93.776 73.349 1283000 1836400 76474 2434700 1372800 1782000 1408200 1215900 944000 1111100 1711900 1195100 1715800 178900 2431800 1321800 1843000 1412200 1261700 1007900 1089500 1627600 2 2 2 2 2 2 2 2 2 2 2 744510 1062700 42797 1168300 717380 1287500 813950 723570 633660 670080 941690 693530 991970 101230 1186200 692880 1291600 815000 762540 663460 656640 898870 1 1 1 1 1 1 1 1 1 1 1 538470 773780 33677 1266400 655440 494530 594250 492330 310330 441000 770220 501620 723860 77667 1245600 628970 551360 597180 499140 344450 432820 728770 1 1 1 1 1 1 1 1 1 1 1 110790000 67678000 43116000 1833 1013 1721 10718;10719 12892;12893 12893 2 ASSSILIDESEPTTNIQIR Unmodified 2073.059 0.058978027 3203 Q9UNZ2;Q9UNZ2-5;Q9UNZ2-4;Q9UNZ2-6 NSFL1C NSFL1 cofactor p47 yes no 0 0 0 0 By MS/MS By MS/MS 3.43 0.728 1 2 4 4 3 60.713 60.549 2;3 5.2292E-134 19202 20211116_3442_TMUAki_TMT10x_S_F4 390.95 357.06 29328000 48527000 655490 48038000 38895000 49419000 37252000 30611000 31891000 31749000 37265000 27312000 45279000 2783400 49062000 37293000 49837000 37707000 32106000 32869000 30961000 35782000 10 10 9 10 10 10 10 10 10 10 10 20938000 33769000 487070 33277000 27923000 40576000 26870000 20821000 22461000 22209000 26102000 19499000 31509000 1894700 34092000 26777000 40442000 27174000 22208000 23172000 21633000 25067000 6 6 5 6 6 6 6 6 6 6 6 8390600 14758000 168420 14761000 10972000 8842800 10382000 9789700 9430000 9540600 11164000 7813700 13771000 888760 14970000 10516000 9394800 10533000 9898300 9696600 9328100 10715000 4 4 4 4 4 4 4 4 4 4 4 7281700000 3291100000 3990600000 1834 3203 1722 10720;10721;10722;10723;10724;10725;10726 12894;12895;12896;12897;12898;12899;12900;12901;12902;12903;12904;12905 12905 12 ASSSLGLQDFDLLR Unmodified 1520.7835 0.78347187 1004 P41743 PRKCI Protein kinase C iota type yes yes 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 76.254 76.237 2 1.1253E-14 24554 20211116_3445_TMUAki_TMT10x_S_F6 159.36 104.31 6625600 11484000 0 10444000 8411500 7361600 7742600 7120600 6439100 7408200 8793700 6168500 10712000 494520 10682000 8043400 7684200 7848300 7260500 6691200 7223400 8410100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6625600 11484000 0 10444000 8411500 7361600 7742600 7120600 6439100 7408200 8793700 6168500 10712000 494520 10682000 8043400 7684200 7848300 7260500 6691200 7223400 8410100 1 1 0 1 1 1 1 1 1 1 1 420460000 0 420460000 1835 1004 1723 10727;10728 12906 12906 1 ASSTSPVEISEWLDQK Unmodified 1775.8578 0.85775902 659 P13804;P13804-2 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.745 5 1 4 2 74.685 74.659 3 7.7064E-07 23550 20211116_3434_TMUAki_TMT10x_P_F6 101.2 87.536 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1836 659 1724 10729;10730;10731;10732;10733;10734 12907;12908;12909;12910;12911;12912 12910 6 ASSVTTFTGEPNTCPR Unmodified 1723.7835 0.78354822 1193 P52943;P52943-2 CRIP2 Cysteine-rich protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 5 1 1 1 1 1 39.816 39.929 3 3.7775E-15 9603 20211116_3445_TMUAki_TMT10x_S_F6 133.91 121.85 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1837 1193 1725 10735;10736 12913;12914 12914 2 ASTASPCNNNINAATAVALQEPR Unmodified 2369.1394 0.13937039 2043 Q71RC2;Q71RC2-5;Q71RC2-6;Q71RC2-4;Q71RC2-3 LARP4 La-related protein 4 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 50.096 50.246 3 2.5632E-11 13915 20211116_3445_TMUAki_TMT10x_S_F6 112.47 103.06 1849300 3838700 31394 4112600 1713500 1498600 1459300 2449300 2857200 2374500 3202400 1722100 3582900 173440 4137100 1638000 1709300 1536800 2440100 2857800 2322100 3078600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1849300 3838700 31394 4112600 1713500 1498600 1459300 2449300 2857200 2374500 3202400 1722100 3582900 173440 4137100 1638000 1709300 1536800 2440100 2857800 2322100 3078600 2 2 1 2 2 2 2 2 2 2 2 298460000 0 298460000 1838 2043 1726 10737;10738 12915;12916;12917 12916 3 ASTNAMLISAGLPPLK Oxidation (M) 1598.8702 0.87017839 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 1 0 By MS/MS By MS/MS 1.57 0.495 3 4 4 3 65.347 65.16 2;3 2.228E-07 21805 20211116_3429_TMUAki_TMT10x_P_F2 117.27 98.489 26807000 45974000 297880 44770000 37277000 61771000 34707000 48236000 49571000 43870000 40614000 24962000 42895000 2147300 46012000 35694000 61575000 35799000 49596000 49462000 43026000 39456000 10 10 6 10 10 10 10 10 10 10 10 19441000 33369000 167960 32876000 28772000 53310000 27426000 35792000 36875000 31805000 29665000 18103000 31135000 1399500 33880000 27561000 52655000 28183000 37156000 36845000 31227000 28840000 7 7 3 7 7 7 7 7 7 7 7 7365900 12605000 129920 11893000 8505200 8460400 7280200 12444000 12696000 12065000 10948000 6859300 11759000 747720 12132000 8132200 8920200 7616400 12440000 12617000 11799000 10615000 3 3 3 3 3 3 3 3 3 3 3 5236300000 3140600000 2095700000 1839 196 1727 10739;10740;10741;10742;10743;10744;10745 12918;12919;12920;12921;12922;12923;12924;12925;12926;12927 12923 143 10 ASTNAMLISAGLPPLK Unmodified 1582.8753 0.87526376 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 0 0 By MS/MS By MS/MS 2.8 0.4 1 4 3 2 73.974 73.763 2;3 8.5382E-22 25757 20211116_3430_TMUAki_TMT10x_P_F3 158.59 128.15 19995000 31264000 173540 32838000 21641000 23577000 22040000 12375000 10536000 13778000 21718000 18618000 29178000 1774300 33250000 20767000 24339000 21979000 13190000 11619000 13399000 20605000 7 7 4 7 7 7 7 7 7 7 7 10145000 15225000 100720 15288000 10801000 16273000 11834000 7497300 6794000 8022000 10881000 9446200 14206000 886710 15606000 10385000 16320000 11794000 8081300 7277300 7813000 10370000 4 4 2 4 4 4 4 4 4 4 4 9850500 16039000 72819 17550000 10841000 7304300 10205000 4877900 3741900 5756300 10837000 9172300 14972000 887630 17644000 10382000 8018600 10185000 5108300 4341400 5585700 10234000 3 3 2 3 3 3 3 3 3 3 3 2912200000 1265400000 1646800000 1840 196 1727 10746;10747;10748;10749;10750 12928;12929;12930;12931;12932;12933;12934;12935 12932 8 ASTNIQDTEGNTPLHLACDEERVEEAK Unmodified 3026.3887 0.38872138 362 O75832 PSMD10 26S proteasome non-ATPase regulatory subunit 10 yes yes 0 0 0 1 By MS/MS By MS/MS 2.17 1.07 2 2 1 1 2 4 49.94 49.793 4 2.3167E-92 15939 20211116_3439_TMUAki_TMT10x_S_F1 260.32 242.81 23153000 43252000 353420 48517000 35612000 42890000 27886000 28006000 27916000 29180000 32712000 21559000 40378000 1894300 49040000 33964000 43706000 28691000 29261000 28569000 28450000 31408000 10 10 4 10 10 10 10 10 10 10 10 13033000 24658000 332190 26655000 25980000 34877000 20824000 14537000 15692000 16383000 17625000 12137000 23016000 1167500 27175000 24799000 34566000 21234000 15862000 16257000 15925000 16943000 4 4 2 4 4 4 4 4 4 4 4 10120000 18594000 21238 21862000 9632400 8013400 7061900 13469000 12224000 12796000 15087000 9422300 17363000 726850 21865000 9164500 9140400 7457400 13399000 12312000 12525000 14465000 6 6 2 6 6 6 6 6 6 6 6 6621200000 4044000000 2577100000 1841 362 1728 10751;10752;10753;10754;10755;10756 12936;12937;12938;12939;12940;12941;12942;12943;12944;12945 12941 10 ASTTLDIKDSISAVSSEK Unmodified 1850.9473 0.94730231 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 61.585 62.28 3 2.7969E-15 18540 20211116_3434_TMUAki_TMT10x_P_F6 132.13 114.73 2026000 3997000 0 2765000 4995000 9310900 4494600 7587200 6189700 5551000 4548900 1886200 3725000 189580 3005600 4775600 9042800 4637700 7740100 6164500 5505200 4439000 1 1 0 1 1 1 1 1 1 1 1 2026000 3997000 0 2765000 4995000 9310900 4494600 7587200 6189700 5551000 4548900 1886200 3725000 189580 3005600 4775600 9042800 4637700 7740100 6164500 5505200 4439000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 783930000 783930000 0 1842 1057 1729 10757;10758 12946;12947 12946 2 ASVGECPAPVPVK Acetyl (Protein N-term) 1351.6806 0.6805867 1251 P56134;P56134-3 ATP5J2 ATP synthase subunit f, mitochondrial yes no 1 0 0 0 By MS/MS 3 0 1 1 52.346 52.22 2 0.00055687 16953 20211116_3430_TMUAki_TMT10x_P_F3 55.567 36.952 859640 1346500 0 1685700 1423800 1776800 1000200 1178700 1184700 981900 1019900 800390 1257700 76345 1697100 1354400 1791000 1042400 1222700 1191300 967090 988980 1 1 0 1 1 1 1 1 1 1 1 859640 1346500 0 1685700 1423800 1776800 1000200 1178700 1184700 981900 1019900 800390 1257700 76345 1697100 1354400 1791000 1042400 1222700 1191300 967090 988980 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 150380000 150380000 0 1843 1251 1730 10759 12948 12948 1 ASVITQVFHVPLEER Unmodified 1723.9257 0.92571943 1467 Q00341;Q00341-2 HDLBP Vigilin yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 66.322 66.795 3 8.1203E-15 22721 20211116_3446_TMUAki_TMT10x_S_F7 156 132.17 5370900 10049000 219250 8030500 7517000 10671000 7726500 8433000 7912800 8568400 8029600 5002500 9369100 679670 8374400 7226200 10658000 7832200 8691100 8045900 8362700 7742300 2 2 2 2 2 2 2 2 2 2 2 2858400 5143700 55581 3914700 3690000 7113600 4114200 4781900 4731000 4739100 4216300 2661800 4795000 300430 4128300 3552200 6997200 4170200 4978300 4767700 4630200 4083200 1 1 1 1 1 1 1 1 1 1 1 2512600 4905100 163660 4115700 3827100 3557600 3612300 3651100 3181800 3829300 3813400 2340700 4574100 379250 4246100 3674100 3660800 3662000 3712900 3278200 3732600 3659100 1 1 1 1 1 1 1 1 1 1 1 1536900000 798420000 738510000 1844 1467 1731 10760;10761;10762 12949;12950;12951 12951 3 ASVKEQDYLCHVYVR Unmodified 1865.9094 0.90941744 192 O15498;O15498-2 YKT6 Synaptobrevin homolog YKT6 yes no 0 0 0 1 By MS/MS By matching 7.5 0.5 1 1 1 1 42.863 43.109 4 0.011567 12620 20211116_3435_TMUAki_TMT10x_P_F7 56.768 50.197 3914500 6655600 69166 6435100 8768800 11022000 6712900 6140700 5123400 5466500 5549600 3645300 6209600 456990 6649100 8360400 10836000 6867400 6469600 5296900 5366600 5340300 2 2 2 2 2 2 2 2 2 2 2 3914500 6655600 69166 6435100 8768800 11022000 6712900 6140700 5123400 5466500 5549600 3645300 6209600 456990 6649100 8360400 10836000 6867400 6469600 5296900 5366600 5340300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 224160000 206740000 17415000 1845 192 1732 10763;10764 12952;12953 12953 2 ASVLFDTMQHHLALNR Oxidation (M) 1867.9363 0.93630089 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 1 0 By MS/MS By MS/MS 5 2.98 2 2 1 2 4 5 6 44.428 44.47 3;4 2.5761E-22 11307 20211116_3447_TMUAki_TMT10x_S_F8 178.67 147.19 11487000 17965000 191210 20070000 18715000 20248000 12479000 16613000 17064000 13685000 17937000 10697000 16772000 1171300 20329000 17796000 20535000 13126000 16987000 17190000 13486000 17276000 15 15 9 15 15 15 15 15 15 15 15 7154100 10873000 157240 11988000 14921000 16971000 9266200 10748000 10700000 8753900 11383000 6662000 10149000 801890 12226000 14172000 16842000 9739200 11183000 10847000 8631700 10959000 9 9 6 9 9 9 9 9 9 9 9 4333000 7092900 33962 8081900 3794000 3277000 3212300 5864400 6363600 4931000 6553800 4034600 6622100 369400 8103200 3624400 3692900 3386300 5804000 6342700 4854300 6316300 6 6 3 6 6 6 6 6 6 6 6 5151100000 2511200000 2639900000 1846 1057 1733 10765;10766;10767;10768;10769;10770;10771;10772;10773;10774;10775 12954;12955;12956;12957;12958;12959;12960;12961;12962;12963;12964;12965;12966;12967;12968 12967 1368 15 ASVLFDTMQHHLALNR Unmodified 1851.9414 0.94138627 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.8 0.748 2 2 1 2 3 58.849 58.602 4 7.3094E-29 20626 20211116_3441_TMUAki_TMT10x_S_F3 181.71 161.92 6169000 10975000 299460 11497000 8218900 9881900 7598900 6577600 6081700 5295700 7484500 5746200 10242000 751770 11668000 7883100 10092000 7693300 6816000 6303300 5224900 7176600 8 8 6 8 8 8 8 8 8 8 8 3699800 6408600 233900 6935800 5327200 7493900 5176300 3776300 3553400 2739500 4049200 3446600 5981900 545680 7046800 5118200 7516400 5208200 3996100 3703600 2718200 3890700 4 4 3 4 4 4 4 4 4 4 4 2469200 4566000 65564 4560900 2891700 2387900 2422600 2801300 2528300 2556200 3435400 2299600 4260500 206090 4620800 2764900 2576000 2485100 2819900 2599700 2506600 3285900 4 4 3 4 4 4 4 4 4 4 4 4251700000 1640200000 2611500000 1847 1057 1733 10776;10777;10778;10779;10780 12969;12970;12971;12972;12973;12974;12975;12976 12975 8 ASVNSETESSFNINENTTASGTGLSEK Unmodified 2773.2526 0.25260505 197 O43148;O43148-2 RNMT mRNA cap guanine-N7 methyltransferase yes no 0 0 0 0 By MS/MS 3 0 1 1 54.243 54.068 4 1.2637E-18 17722 20211116_3430_TMUAki_TMT10x_P_F3 139.47 123.17 880220 1319700 16289 1506900 1457500 2109800 1239600 1240500 1105100 1049100 1116600 819700 1232100 96243 1533100 1393100 2092600 1264600 1299400 1130600 1032500 1076800 1 1 1 1 1 1 1 1 1 1 1 880220 1319700 16289 1506900 1457500 2109800 1239600 1240500 1105100 1049100 1116600 819700 1232100 96243 1533100 1393100 2092600 1264600 1299400 1130600 1032500 1076800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 319620000 319620000 0 1848 197 1734 10781 12977 12977 1 ASVPREPGGPSPR Unmodified 1305.6789 0.67894722 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 28.263 28.253 3 1.8595E-09 6023 20211116_3433_TMUAki_TMT10x_P_F5 134.68 97.004 891170 1377000 6586.3 1252400 1527800 1838900 1064500 871910 1029400 778530 1135500 829810 1284400 88627 1295200 1453700 1815500 1102900 932510 1052500 764200 1092100 3 3 2 3 3 3 3 3 3 3 3 891170 1377000 6586.3 1252400 1527800 1838900 1064500 871910 1029400 778530 1135500 829810 1284400 88627 1295200 1453700 1815500 1102900 932510 1052500 764200 1092100 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 77916000 77916000 0 1849 157 1735 10782;10783 12978;12979;12980 12979 3 ASVSELACIYSALILHDDEVTVTEDK Acetyl (Protein N-term) 2919.4059 0.40593457 506 P05386 RPLP1 60S acidic ribosomal protein P1 yes yes 1 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 83.016 83.008 3 2.8184E-49 28973 20211116_3429_TMUAki_TMT10x_P_F2 141.64 120.51 2189400 3522800 874.02 3009200 2017500 2064600 2098800 1405200 1537800 1663800 2227700 2038300 3285300 147530 3092000 1934500 2146700 2107300 1469800 1613500 1614300 2127600 2 2 1 2 2 2 2 2 2 2 2 794410 1166300 874.02 1069800 576800 924960 493730 378840 461640 567100 762920 739680 1087900 63629 1096000 551030 938950 504160 418370 481730 546100 726630 1 1 1 1 1 1 1 1 1 1 1 1395000 2356600 0 1939400 1440700 1139600 1605100 1026400 1076200 1096700 1464700 1298600 2197400 83902 1996000 1383400 1207800 1603100 1051400 1131700 1068200 1400900 1 1 0 1 1 1 1 1 1 1 1 420940000 100260000 320680000 1850 506 1736 10784;10785;10786 12981;12982 12981 2 ASVSITFDNSDKK Unmodified 1410.6991 0.69907354 423 O95347;O95347-2 SMC2 Structural maintenance of chromosomes protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 5.83 0.687 2 3 1 2 4 45.543 45.683 3;4 1.9286E-09 12072 20211116_3445_TMUAki_TMT10x_S_F6 132.59 103.24 28656000 47765000 283900 54231000 37637000 38487000 29131000 33764000 32790000 32045000 39808000 26683000 44594000 2673700 54632000 35885000 40073000 30107000 34515000 33447000 31367000 38184000 7 7 4 7 7 7 7 7 7 7 7 9932900 17977000 243820 18432000 20494000 23740000 13488000 11568000 11589000 11654000 14510000 9250300 16776000 1198700 18851000 19489000 23583000 13989000 12378000 11977000 11378000 13907000 2 2 2 2 2 2 2 2 2 2 2 18723000 29788000 40081 35799000 17143000 14747000 15642000 22196000 21201000 20391000 25298000 17433000 27817000 1475000 35781000 16397000 16490000 16117000 22137000 21470000 19989000 24277000 5 5 2 5 5 5 5 5 5 5 5 1056500000 583410000 473040000 1851 423 1737 10787;10788;10789;10790;10791;10792 12983;12984;12985;12986;12987;12988;12989;12990 12987 8 ASVSQVEADLK Unmodified 1145.5928 0.59281755 1536 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 52.225 52.115 2 1.3606E-27 17984 20211116_3441_TMUAki_TMT10x_S_F3 233.54 155.05 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1852 1536 1738 10793;10794;10795 12991;12992;12993 12993 3 ASVTVGGEQISAIGR Unmodified 1443.7682 0.76815616 2284 Q8TEA8 DTD1 D-tyrosyl-tRNA(Tyr) deacylase 1 yes yes 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 48.16 48.325 2 9.3467E-30 12901 20211116_3444_TMUAki_TMT10x_S_F5 208.87 172.29 2364400 4311900 4372.4 4767000 1941800 1770400 1799000 3039000 2720300 2791500 3262000 2201300 4025100 167960 4786200 1856900 2016900 1860800 3018400 2746300 2736500 3129900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2364400 4311900 4372.4 4767000 1941800 1770400 1799000 3039000 2720300 2791500 3262000 2201300 4025100 167960 4786200 1856900 2016900 1860800 3018400 2746300 2736500 3129900 2 2 1 2 2 2 2 2 2 2 2 252860000 0 252860000 1853 2284 1739 10796;10797 12994;12995 12994 2 ASWSSLSMDEKVELYR Oxidation (M) 1915.8986 0.89857798 650 P13073 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes yes 0 0 1 1 By MS/MS By MS/MS 6 0 2 1 1 57.614 57.677 3 0.010834 16972 20211116_3445_TMUAki_TMT10x_S_F6 55.011 47.812 12861000 19539000 0 19942000 11962000 15798000 14026000 8167900 8871200 10336000 13223000 11972000 18234000 691270 20254000 11498000 16178000 13959000 8754500 9404900 10005000 12621000 2 2 0 2 2 2 2 2 2 2 2 5928300 8446500 0 9232500 5562200 8345500 5951800 3597900 3933000 4655200 6119000 5518700 7884400 337050 9349900 5333400 8449900 5954300 3929400 4167100 4502900 5835100 1 1 0 1 1 1 1 1 1 1 1 6932400 11093000 0 10709000 6399500 7452200 8073800 4570000 4938200 5680700 7104000 6453100 10349000 354210 10904000 6164400 7728000 8005000 4825100 5237900 5502300 6785900 1 1 0 1 1 1 1 1 1 1 1 810880000 506360000 304520000 1854 650 1740 10798;10799 12996;12997 12997 702 2 ASWSSLSMDEKVELYR Unmodified 1899.9037 0.90366336 650 P13073 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes yes 0 0 0 1 By MS/MS 7 0 1 1 63.112 63.568 3 0.068455 21364 20211116_3446_TMUAki_TMT10x_S_F7 40.085 24.319 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1855 650 1740 10800 12998 12998 1 ASYDVSDSGQLEHVQPWSV Unmodified 2102.9545 0.95451296 1487 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 By MS/MS 2 0 1 1 66.7 66.389 3 0.039935 22302 20211116_3429_TMUAki_TMT10x_P_F2 41.53 24.65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1856 1487 1741 10801 12999 12999 1 ASYGVEDPEYAVTQLAQTTMR Oxidation (M) 2345.0845 0.084540851 3148 Q9UJZ1;Q9UJZ1-2 STOML2 Stomatin-like protein 2, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 2 3 70.638 70.553 3 5.291E-05 23247 20211116_3442_TMUAki_TMT10x_S_F4 70.452 66.28 20392000 34919000 279250 30460000 22571000 30331000 25110000 24156000 22558000 25773000 26702000 18987000 32566000 1520000 31387000 21710000 30768000 25258000 24920000 23208000 25104000 25630000 9 9 5 9 9 9 9 9 9 9 9 6019000 10255000 68093 8645100 5921800 12730000 7913600 7943600 7474100 7617000 8048100 5604400 9563300 508510 8994300 5728900 12609000 7909400 8308300 7643200 7452600 7745900 3 3 2 3 3 3 3 3 3 3 3 14373000 24664000 211160 21814000 16650000 17600000 17196000 16213000 15084000 18156000 18654000 13383000 23003000 1011500 22393000 15981000 18159000 17349000 16612000 15565000 17652000 17885000 6 6 3 6 6 6 6 6 6 6 6 5484000000 2435100000 3049000000 1857 3148 1742 10802;10803;10804;10805;10806 13000;13001;13002;13003;13004;13005;13006;13007;13008 13004 3160 9 ASYVAPLTAQPATYR Unmodified 1607.8308 0.83075641 2534 Q96PK6 RBM14 RNA-binding protein 14 yes yes 0 0 0 0 By MS/MS By MS/MS 5 3.46 3 4 4 3 49.465 49.41 2;3 3.9214E-51 13905 20211116_3436_TMUAki_TMT10x_P_F8 281.17 250.85 7400600 12145000 73074 12737000 10250000 11713000 7836800 12388000 12402000 9990300 11652000 6890800 11335000 674900 12937000 9768700 12011000 8216700 12489000 12390000 9855900 11264000 5 5 2 5 5 5 5 5 5 5 5 3284400 5038100 50412 5440300 6656400 8112300 4423800 4994400 4934600 4076200 5248800 3058300 4702600 348980 5561500 6328200 8029400 4619800 5207900 5008900 4018900 5053600 2 2 1 2 2 2 2 2 2 2 2 4116200 7107300 22662 7297100 3593400 3600900 3413000 7393500 7467000 5914100 6403600 3832500 6632600 325920 7375600 3440400 3981500 3596900 7281500 7381200 5837000 6210300 3 3 1 3 3 3 3 3 3 3 3 1642800000 946310000 696500000 1858 2534 1743 10807;10808;10809;10810;10811;10812;10813 13009;13010;13011;13012;13013;13014;13015 13012 7 ATAAFILANEHNVALFK Unmodified 1828.9836 0.98356866 84 O00410;O00410-2;O00410-3 IPO5 Importin-5 yes no 0 0 0 0 By MS/MS By MS/MS 3.42 2.53 2 5 2 1 2 6 6 71.981 71.829 2;3;4 9.6384E-43 23269 20211116_3440_TMUAki_TMT10x_S_F2 224.43 196.42 98395000 156200000 187590 160610000 76667000 125550000 108160000 79568000 81978000 87029000 107480000 91607000 145770000 6815200 163010000 74236000 129030000 107250000 83444000 85449000 84689000 102890000 17 17 7 17 17 17 17 17 17 17 17 46245000 68696000 21059 72701000 38490000 72240000 46280000 36748000 38134000 40230000 46460000 43056000 64116000 3376600 73878000 37079000 72824000 46284000 39258000 39447000 39147000 44560000 7 7 2 7 7 7 7 7 7 7 7 52149000 87507000 166540 87910000 38177000 53312000 61881000 42820000 43844000 46798000 61021000 48551000 81655000 3438600 89136000 37157000 56209000 60971000 44185000 46003000 45542000 58333000 10 10 5 10 10 10 10 10 10 10 10 27569000000 17730000000 9839200000 1859 84 1744 10814;10815;10816;10817;10818;10819;10820;10821;10822;10823;10824;10825 13016;13017;13018;13019;13020;13021;13022;13023;13024;13025;13026;13027;13028;13029;13030;13031;13032;13033 13031 18 ATAEVLNIGK Acetyl (Protein N-term) 1056.5815 0.58152458 767 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 1 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 64.932 64.708 2 8.1629E-10 20345 20211116_3440_TMUAki_TMT10x_S_F2 114.93 92.784 71377000 116630000 694720 124480000 84947000 102530000 80153000 65000000 73572000 71011000 85346000 66462000 108860000 6442500 126110000 81352000 104960000 81350000 68161000 75553000 69106000 81965000 9 9 5 9 9 9 9 9 9 9 9 41366000 65418000 476560 71117000 56819000 77899000 53296000 36999000 42646000 40737000 48652000 38519000 61063000 3978100 72250000 54413000 78021000 53915000 39794000 44064000 39632000 46747000 5 5 3 5 5 5 5 5 5 5 5 30011000 51213000 218160 53364000 28128000 24629000 26857000 28000000 30926000 30274000 36694000 27943000 47795000 2464300 53858000 26939000 26938000 27435000 28367000 31488000 29474000 35219000 4 4 2 4 4 4 4 4 4 4 4 8921800000 4792600000 4129100000 1860 767 1745 10826;10827;10828;10829;10830;10831 13034;13035;13036;13037;13038;13039;13040;13041;13042 13039 9 ATAEVLNIGKK Acetyl (Protein N-term) 1184.6765 0.6764876 767 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 1 0 0 1 By MS/MS By MS/MS 5.57 0.495 3 4 4 3 55.413 55.532 2;3 1.3458E-14 16077 20211116_3445_TMUAki_TMT10x_S_F6 97.635 71.741 36751000 60149000 187300 67562000 54705000 58314000 38217000 69407000 60894000 50809000 55648000 34219000 56153000 3283100 68263000 52038000 60226000 40329000 69452000 60770000 50389000 53844000 8 8 5 8 8 8 8 8 8 8 8 13368000 22759000 127900 24417000 31953000 38972000 20721000 25496000 22476000 19357000 20132000 12448000 21243000 1471000 25010000 30362000 38502000 21660000 26419000 22706000 19158000 19493000 4 4 3 4 4 4 4 4 4 4 4 23383000 37390000 59397 43145000 22752000 19341000 17496000 43911000 38418000 31452000 35516000 21771000 34911000 1812200 43253000 21676000 21724000 18670000 43033000 38065000 31231000 34351000 4 4 2 4 4 4 4 4 4 4 4 4714600000 2430100000 2284500000 1861 767 1746 10832;10833;10834;10835;10836;10837;10838 13043;13044;13045;13046;13047;13048;13049;13050;13051 13050 9 ATAFNEQVDKFFPLIEVNK Unmodified 2209.1419 0.1419198 828 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 7.8 0.4 1 4 3 2 78.506 78.506 3;4 2.492E-08 25201 20211116_3447_TMUAki_TMT10x_S_F8 110.41 93.045 18911000 32854000 212790 25826000 25427000 25844000 24455000 19370000 15643000 19391000 21987000 17609000 30630000 1784500 26844000 24364000 26182000 24584000 20021000 16525000 18938000 21014000 3 3 2 3 3 3 3 3 3 3 3 4215200 7652500 144660 6696200 4345200 8552100 5306700 5123700 4207700 4205200 5312200 3925900 7137000 486110 6926600 4199400 8520800 5298500 5354900 4367900 4144800 5090300 1 1 1 1 1 1 1 1 1 1 1 14696000 25202000 68126 19130000 21082000 17292000 19148000 14246000 11436000 15186000 16675000 13683000 23493000 1298400 19917000 20165000 17661000 19285000 14666000 12157000 14793000 15924000 2 2 1 2 2 2 2 2 2 2 2 4868200000 3030200000 1838000000 1862 828 1747 10839;10840;10841;10842;10843 13052;13053;13054 13053 3 ATAGDTHLGGEDFDNR Unmodified 1674.7234 0.72339081 596;701 P0DMV8;P0DMV9;P0DMV8-2;P17066;P48741 HSPA1A;HSPA1B;HSPA6;HSPA7 Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 no no 0 0 0 0 By MS/MS By MS/MS 2.67 1.49 2 1 1 1 1 4 2 33.728 33.647 3 7.1279E-47 8906 20211116_3429_TMUAki_TMT10x_P_F2 240.24 234.33 2084800 3207700 32775 4665400 7762900 4688100 2958000 3047400 4223500 2130800 4042000 1941300 2998600 273840 4656900 7324000 4737700 3290800 3153700 4234900 2118800 3904800 7 7 5 7 7 7 7 7 7 7 7 1516800 2405900 29253 3164300 7223500 4252400 2294500 2130500 2846400 1599700 2682300 1412500 2247800 227560 3190800 6803700 4217200 2602200 2257400 2865700 1584200 2592600 5 5 4 5 5 5 5 5 5 5 5 568000 801810 3521.9 1501100 539400 435740 663500 916860 1377100 531040 1359700 528860 750790 46285 1466100 520300 520430 688620 896370 1369200 534540 1312200 2 2 1 2 2 2 2 2 2 2 2 1370800000 1122600000 248230000 1863 596;701 1748 10844;10845;10846;10847;10848;10849 13055;13056;13057;13058;13059;13060;13061 13056 7 ATAGDTHLGGEDFDNRLVNHFVEEFK Unmodified 2917.3631 0.36309897 596 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 0 1 By MS/MS By MS/MS 3 0.756 2 3 2 5 2 69.466 69.225 4;5 2.6648E-17 22711 20211116_3442_TMUAki_TMT10x_S_F4 128.98 93.588 36509000 56308000 724110 59343000 47364000 59982000 41727000 44230000 39021000 38857000 49531000 33996000 52553000 3511900 60335000 45294000 60713000 42537000 45605000 40189000 38171000 47456000 8 8 4 8 8 8 8 8 8 8 8 26606000 39952000 724110 41773000 26860000 48471000 28621000 31411000 28744000 28463000 35619000 24777000 37286000 2788300 42587000 25836000 48582000 28943000 32709000 29481000 27920000 34148000 6 6 4 6 6 6 6 6 6 6 6 9903300 16356000 0 17570000 20504000 11512000 13107000 12820000 10277000 10394000 13912000 9219000 15267000 723540 17748000 19458000 12130000 13594000 12896000 10708000 10251000 13308000 2 2 0 2 2 2 2 2 2 2 2 6026100000 3710700000 2315400000 1864 596 1749 10850;10851;10852;10853;10854;10855;10856 13062;13063;13064;13065;13066;13067;13068;13069 13069 8 ATALQEISQVCQLCQQSPR Unmodified 2216.0678 0.067785349 3357 Q9Y6X3 MAU2 MAU2 chromatid cohesion factor homolog yes yes 0 0 0 0 By MS/MS 7 0 1 1 64.183 64.615 3 7.0209E-18 21843 20211116_3446_TMUAki_TMT10x_S_F7 152.01 140.57 1118300 2112200 7492.6 1689500 1577400 1452500 1320600 1697100 1527000 1702200 1618000 1041300 1969300 106120 1749900 1506500 1499800 1359400 1713300 1547600 1662200 1558100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1118300 2112200 7492.6 1689500 1577400 1452500 1320600 1697100 1527000 1702200 1618000 1041300 1969300 106120 1749900 1506500 1499800 1359400 1713300 1547600 1662200 1558100 1 1 1 1 1 1 1 1 1 1 1 352070000 0 352070000 1865 3357 1750 10857 13070 13070 1 ATAPVSFNYYGVVTGPSASK Unmodified 2015 6.5850998E-06 1952 Q5VW32;Q5VW32-2 BROX BRO1 domain-containing protein BROX yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 66.655 66.388 3 1.6294E-18 22261 20211116_3429_TMUAki_TMT10x_P_F2 153.11 136.61 9948900 18126000 154010 16063000 12749000 19687000 12923000 14193000 12861000 13068000 15191000 9263700 16906000 659800 16587000 12231000 19709000 13097000 14674000 13169000 12809000 14582000 4 4 2 4 4 4 4 4 4 4 4 5514700 9400700 0 7777500 5780500 14124000 7572500 7811700 7159200 7244600 8177300 5133900 8765800 113150 8143900 5580900 13856000 7574600 8244000 7337400 7098800 7856800 2 2 0 2 2 2 2 2 2 2 2 4434200 8725500 154010 8285200 6968500 5562900 5350200 6380900 5702000 5823300 7013800 4129800 8140200 546650 8442600 6650400 5853500 5522400 6429700 5832000 5710300 6725400 2 2 2 2 2 2 2 2 2 2 2 856810000 565610000 291190000 1866 1952 1751 10858;10859 13071;13072;13073;13074 13071 4 ATAPYNYSYIFK Acetyl (Protein N-term) 1478.7082 0.70818166 1295 P61106 RAB14 Ras-related protein Rab-14 yes yes 1 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 78.702 78.725 2 0.00028249 27747 20211116_3446_TMUAki_TMT10x_S_F7 88.417 70.685 17021000 29129000 452400 24933000 23651000 24807000 22571000 19412000 16438000 18421000 20426000 15851000 27165000 1918100 25730000 22678000 25158000 22762000 19979000 17133000 18032000 19581000 3 3 2 3 3 3 3 3 3 3 3 7038800 11464000 0 9465200 6884400 13947000 9314100 8050900 6314400 7747700 7970300 6553700 10689000 573890 9864300 6661600 13799000 9227800 8474000 6613900 7579300 7637400 1 1 0 1 1 1 1 1 1 1 1 9982100 17666000 452400 15468000 16767000 10860000 13257000 11361000 10124000 10673000 12455000 9297700 16476000 1344200 15866000 16016000 11359000 13534000 11505000 10519000 10453000 11943000 2 2 2 2 2 2 2 2 2 2 2 2576500000 683960000 1892500000 1867 1295 1752 10860;10861;10862 13075;13076;13077 13076 3 ATASSSAQEMEQQLAER Oxidation (M) 1851.8269 0.8268696 2845 Q9H9Q2;Q9H9Q2-2 COPS7B COP9 signalosome complex subunit 7b yes no 0 0 1 0 By MS/MS By MS/MS 1.4 0.49 3 2 3 2 33.103 33.066 3 3.7455E-15 7230 20211116_3428_TMUAki_TMT10x_P_F1 130.01 111.64 239900 382330 5370.4 508760 475710 397910 315160 316940 319650 241050 375550 223410 357230 25541 508440 452430 410380 328210 324050 326970 238550 360550 3 3 2 3 3 3 3 3 3 3 3 124190 195500 3097.8 263010 376850 289180 211390 166890 172560 123280 195400 115660 182670 16722 263940 357370 290240 221880 174540 178060 122200 187790 1 1 1 1 1 1 1 1 1 1 1 115710 186830 2272.6 245750 98869 108730 103770 150050 147080 117770 180140 107760 174550 8818.9 244500 95061 120140 106340 149510 148910 116350 172750 2 2 1 2 2 2 2 2 2 2 2 110010000 94783000 15230000 1868 2845 1753 10863;10864;10865;10866;10867 13078;13079;13080;13081 13078 2973 4 ATASSSAQEMEQQLAER Unmodified 1835.832 0.83195498 2845 Q9H9Q2;Q9H9Q2-2 COPS7B COP9 signalosome complex subunit 7b yes no 0 0 0 0 By MS/MS 2 0 1 1 47.802 47.521 3 3.1505E-05 14597 20211116_3429_TMUAki_TMT10x_P_F2 84.375 70.118 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1869 2845 1753 10868 13082 13082 1 ATASSSAQEMEQQLAERECPPHAEQR Oxidation (M) 2956.3039 0.30394589 2845 Q9H9Q2;Q9H9Q2-2 COPS7B COP9 signalosome complex subunit 7b yes no 0 0 1 1 By MS/MS By MS/MS 1 0 2 1 1 32.556 32.571 4 3.1573E-61 8940 20211116_3439_TMUAki_TMT10x_S_F1 229.1 210.22 60367 105940 0 151120 121280 124570 84039 134370 166040 92499 124610 56208 99023 0 150580 115350 128760 89731 134870 163860 92064 121490 2 2 0 2 2 2 2 2 2 2 2 36405 51579 0 78586 91057 98333 59294 53128 65131 47820 53068 33897 48230 0 78559 86511 97941 61986 56140 65576 46922 51566 1 1 0 1 1 1 1 1 1 1 1 23962 54362 0 72538 30225 26238 24746 81245 100910 44679 71539 22311 50793 0 72024 28843 30822 27745 78733 98286 45142 69920 1 1 0 1 1 1 1 1 1 1 1 90048000 55492000 34556000 1870 2845 1754 10869;10870 13083;13084 13084 2973 2 ATASSSAQEMEQQLAERECPPHAEQR Unmodified 2940.309 0.30903127 2845 Q9H9Q2;Q9H9Q2-2 COPS7B COP9 signalosome complex subunit 7b yes no 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 42.452 42.313 4 2.4766E-50 11108 20211116_3440_TMUAki_TMT10x_S_F2 217.93 206.01 201700 303510 0 361270 197660 116630 105340 274340 294610 219070 280540 187780 283420 13110 360820 186970 137450 117530 269320 290930 216230 271060 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 201700 303510 0 361270 197660 116630 105340 274340 294610 219070 280540 187780 283420 13110 360820 186970 137450 117530 269320 290930 216230 271060 1 1 0 1 1 1 1 1 1 1 1 163550000 0 163550000 1871 2845 1754 10871;10872 13085 13085 1 ATATIALGTDSIK Acetyl (Protein N-term) 1302.7031 0.70309628 3124 Q9UHX1-6;Q9UHX1-5 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 1 0 0 0 By MS/MS 4 0 1 1 67.258 67.346 2 1.7313E-18 21488 20211116_3431_TMUAki_TMT10x_P_F4 74.944 55.158 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1872 3124 1755 10873 13086 13086 1 ATATISAKPQITNPK Unmodified 1539.8621 0.86205654 3253 Q9Y2W2 WBP11 WW domain-binding protein 11 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 41.311 41.199 4 0.0013967 10628 20211116_3440_TMUAki_TMT10x_S_F2 68.283 52.03 2637100 4072300 0 4258700 4268500 3729000 2966300 3214500 2941000 2647200 3527400 2455300 3800600 232190 4323500 4059500 3820000 3076200 3277300 3013900 2608800 3384600 2 2 0 2 2 2 2 2 2 2 2 1264300 1832200 0 1973400 2849200 2661600 1647800 1541500 1435900 1290000 1590800 1177100 1710200 119350 2013500 2701200 2643800 1727700 1616300 1475600 1270200 1529800 1 1 0 1 1 1 1 1 1 1 1 1372800 2240100 0 2285300 1419300 1067400 1318600 1673000 1505100 1357200 1936600 1278200 2090500 112840 2309900 1358300 1176200 1348500 1661000 1538300 1338600 1854800 1 1 0 1 1 1 1 1 1 1 1 241480000 186270000 55206000 1873 3253 1756 10874;10875 13087;13088 13088 2 ATATPVPPR Acetyl (Protein N-term) 950.51853 0.5185304 748 P20700 LMNB1 Lamin-B1 yes yes 1 0 0 0 By MS/MS 2 0 3 3 31.138 31.18 2 4.3888E-05 7398 20211116_3440_TMUAki_TMT10x_S_F2 73.26 57.821 61026 106260 0 100780 64037 56174 76540 76580 72650 85910 87210 56821 99135 0 102530 61716 60436 76864 77111 74596 83520 83677 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 61026 106260 0 100780 64037 56174 76540 76580 72650 85910 87210 56821 99135 0 102530 61716 60436 76864 77111 74596 83520 83677 2 2 0 2 2 2 2 2 2 2 2 1817100 0 1817100 1874 748 1757 10876;10877;10878 13089;13090;13091 13091 3 ATATQLLQHPFVR Unmodified 1480.815 0.81504677 1588 Q13043;Q13043-2 STK4 Serine/threonine-protein kinase 4;Serine/threonine-protein kinase 4 37kDa subunit;Serine/threonine-protein kinase 4 18kDa subunit yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 49.603 49.246 3 2.1012E-09 16797 20211116_3441_TMUAki_TMT10x_S_F3 130.79 113.09 5096800 8155700 83944 10547000 3758600 3439900 3201200 3592100 3645400 3460400 5233800 4746200 7619000 482050 10484000 3595000 3946100 3290000 3640600 3745500 3385000 4999600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5096800 8155700 83944 10547000 3758600 3439900 3201200 3592100 3645400 3460400 5233800 4746200 7619000 482050 10484000 3595000 3946100 3290000 3640600 3745500 3385000 4999600 2 2 2 2 2 2 2 2 2 2 2 249390000 0 249390000 1875 1588 1758 10879;10880 13092;13093;13094 13093 3 ATAVMPDGQFK Oxidation (M) 1179.5594 0.55940893 1533 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 1 0 By MS/MS By MS/MS 4.75 1.15 3 4 3 6 8 8 40.013 40.123 2;3 4.191E-06 9766 20211116_3445_TMUAki_TMT10x_S_F6 124.81 97.552 12522000 20534000 5021.1 24324000 24360000 18207000 15964000 12666000 15708000 12660000 19531000 11659000 19174000 1098500 24455000 23140000 18801000 16625000 13157000 16128000 12365000 18722000 11 11 1 11 11 11 11 11 11 11 11 4566800 7301500 0 8689800 15455000 10080000 5691800 4823400 5606100 4670400 6917000 4251700 6818300 472520 8787800 14569000 10065000 6281200 5164800 5753500 4567600 6632000 4 4 0 4 4 4 4 4 4 4 4 7955500 13232000 5021.1 15634000 8905600 8127100 10273000 7842400 10102000 7990100 12614000 7407000 12356000 625940 15667000 8570400 8736000 10343000 7992400 10374000 7797500 12090000 7 7 1 7 7 7 7 7 7 7 7 2573400000 1507100000 1066300000 1876 1533 1759 10881;10882;10883;10884;10885;10886;10887;10888;10889;10890;10891;10892;10893;10894;10895;10896 13095;13096;13097;13098;13099;13100;13101;13102;13103;13104;13105;13106;13107;13108;13109;13110 13107 2066 16 ATAVMPDGQFK Unmodified 1163.5645 0.56449431 1533 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.56 0.831 1 3 4 1 5 4 48.656 48.801 2;3 1.4865E-11 13324 20211116_3445_TMUAki_TMT10x_S_F6 176.6 139.04 33666000 50025000 24217 72908000 68929000 34845000 37979000 20822000 20250000 19340000 43673000 31342000 46765000 2662600 72193000 65274000 37531000 39593000 21833000 22208000 18949000 41404000 7 7 1 7 7 7 7 7 7 7 7 14655000 21730000 0 29610000 52029000 24641000 20916000 9094400 8907300 8738300 18409000 13641000 20306000 1267400 29576000 49075000 25060000 22471000 10020000 9924300 8548900 17464000 3 3 0 3 3 3 3 3 3 3 3 19011000 28295000 24217 43298000 16900000 10204000 17063000 11727000 11343000 10601000 25264000 17700000 26459000 1395200 42617000 16199000 12471000 17122000 11813000 12284000 10400000 23940000 4 4 1 4 4 4 4 4 4 4 4 2987000000 1879400000 1107500000 1877 1533 1759 10897;10898;10899;10900;10901;10902;10903;10904;10905 13111;13112;13113;13114;13115;13116;13117;13118;13119;13120 13119 10 ATAVMPDGQFKDISLSDYK Oxidation (M) 2101.0038 0.003771334 1533 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 1 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 60.445 60.764 3;4 2.9716E-05 18260 20211116_3445_TMUAki_TMT10x_S_F6 81.157 65.26 13868000 27326000 97817 20850000 26968000 52168000 24231000 81355000 55777000 54076000 36302000 12913000 25474000 1361800 22196000 25791000 51869000 25698000 80427000 54672000 53938000 35622000 6 6 3 6 6 6 6 6 6 6 6 7445300 14196000 28081 10896000 15943000 39425000 16747000 42453000 33814000 30027000 20124000 6932100 13234000 704110 11776000 15305000 38472000 17474000 42638000 33168000 29837000 19836000 3 3 2 3 3 3 3 3 3 3 3 6422900 13130000 69736 9953200 11025000 12743000 7483300 38902000 21963000 24050000 16178000 5980800 12240000 657710 10420000 10486000 13398000 8224000 37788000 21504000 24100000 15786000 3 3 1 3 3 3 3 3 3 3 3 3482000000 1802700000 1679300000 1878 1533 1760 10906;10907;10908;10909 13121;13122;13123;13124;13125;13126 13125 2066 6 ATAVMPDGQFKDISLSDYKGK Oxidation (M) 2286.1202 0.12019808 1533 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 1 2 By matching By MS/MS 8 0 2 1 1 55.817 55.857 5 0.0010706 16014 20211116_3447_TMUAki_TMT10x_S_F8 62.002 48.271 2014900 3444000 0 2837400 2511800 2262300 1763100 5713900 4987100 4469800 3442400 1875900 3211300 148330 2928900 2388000 2417700 1927300 5598000 4877600 4416700 3368500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2014900 3444000 0 2837400 2511800 2262300 1763100 5713900 4987100 4469800 3442400 1875900 3211300 148330 2928900 2388000 2417700 1927300 5598000 4877600 4416700 3368500 1 1 0 1 1 1 1 1 1 1 1 470050000 244420000 225630000 1879 1533 1761 10910;10911 13127 13127 2066 1 ATAVVDGAFK Unmodified 977.5182 0.51819605 899 P32119;P32119-2 PRDX2 Peroxiredoxin-2 yes no 0 0 0 0 By MS/MS By MS/MS 5.57 1.18 3 4 4 2 1 7 7 48.99 49.126 2;3 1.9995E-11 13428 20211116_3445_TMUAki_TMT10x_S_F6 214.96 157.92 52792000 80311000 634620 86331000 74379000 65235000 56149000 44926000 45669000 44604000 63432000 49158000 74961000 5150100 87331000 70890000 67302000 57583000 46693000 47549000 43576000 60641000 11 11 6 11 11 11 11 11 11 11 11 28060000 41685000 495300 44910000 48126000 44780000 28837000 22786000 23600000 23295000 32730000 26130000 38909000 3039400 45586000 45688000 45133000 30097000 24292000 24562000 22731000 31291000 5 5 4 5 5 5 5 5 5 5 5 24731000 38626000 139320 41421000 26253000 20455000 27312000 22140000 22068000 21309000 30702000 23028000 36053000 2110800 41745000 25201000 22169000 27486000 22400000 22987000 20845000 29350000 6 6 2 6 6 6 6 6 6 6 6 7328200000 3668100000 3660100000 1880 899 1762 10912;10913;10914;10915;10916;10917;10918;10919;10920;10921;10922;10923;10924;10925 13128;13129;13130;13131;13132;13133;13134;13135;13136;13137;13138;13139;13140;13141 13138 14 ATAVVDGAFKEVK Unmodified 1333.7242 0.72416608 899 P32119;P32119-2 PRDX2 Peroxiredoxin-2 yes no 0 0 0 1 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 52.389 52.711 3 4.2722E-12 16953 20211116_3446_TMUAki_TMT10x_S_F7 155.98 115.26 49060000 83146000 920960 77414000 120040000 143880000 74842000 154570000 150700000 117880000 103270000 45686000 77563000 5882000 80374000 114020000 142720000 80627000 155520000 148310000 116640000 101090000 7 7 6 7 7 7 7 7 7 7 7 32587000 53597000 540240 52470000 93511000 116250000 59017000 95504000 93784000 73877000 64054000 30346000 50007000 4020600 54562000 88826000 114030000 62743000 97502000 92833000 73044000 62711000 5 5 4 5 5 5 5 5 5 5 5 16473000 29549000 380720 24944000 26531000 27630000 15825000 59067000 56915000 44004000 39215000 15341000 27556000 1861400 25812000 25193000 28688000 17884000 58018000 55475000 43597000 38377000 2 2 2 2 2 2 2 2 2 2 2 3844500000 2021800000 1822700000 1881 899 1763 10926;10927;10928;10929;10930;10931 13142;13143;13144;13145;13146;13147;13148;13149 13149 8 ATCAPQHGAPGPGPADASK Unmodified 1788.8213 0.82133071 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 30.23 30.215 3 1.0445E-17 6433 20211116_3431_TMUAki_TMT10x_P_F4 147.9 136.95 633480 1157600 4443.4 983150 1170700 1126600 717490 386170 540960 457540 741610 589870 1079500 64185 1017400 1111400 1122200 746010 432140 565170 443920 709190 2 2 2 2 2 2 2 2 2 2 2 633480 1157600 4443.4 983150 1170700 1126600 717490 386170 540960 457540 741610 589870 1079500 64185 1017400 1111400 1122200 746010 432140 565170 443920 709190 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 172480000 172480000 0 1882 755 1764 10932;10933 13150;13151 13150 2 ATDAMAHVAGFTVAHDVSAR Oxidation (M) 2041.964 0.9639722 1996 Q96GK7;Q6P2I3 FAHD2A;FAHD2B Fumarylacetoacetate hydrolase domain-containing protein 2A;Fumarylacetoacetate hydrolase domain-containing protein 2B yes no 0 0 1 0 By MS/MS 5 0 1 1 36.127 36.302 4 0.0082873 8046 20211116_3444_TMUAki_TMT10x_S_F5 46.982 36.925 538000 911520 9586.2 1070300 536240 401940 491120 601830 632060 533750 832990 501010 851140 53514 1070700 513620 455190 504880 599770 643980 524090 797340 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 538000 911520 9586.2 1070300 536240 401940 491120 601830 632060 533750 832990 501010 851140 53514 1070700 513620 455190 504880 599770 643980 524090 797340 1 1 1 1 1 1 1 1 1 1 1 31603000 0 31603000 1883 1996 1765 10934 13152 13152 2546 1 ATDCVGHDVVTLLR Unmodified 1554.7824 0.78242601 730 P19367;P19367-4;P19367-2;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 52.611 52.759 3 1.8412E-23 15492 20211116_3431_TMUAki_TMT10x_P_F4 180.97 163.46 14948000 24142000 359580 27472000 22236000 23833000 16785000 19448000 18292000 18539000 21802000 13920000 22539000 1676500 27737000 21206000 24405000 17357000 19967000 18668000 18143000 20923000 5 5 5 5 5 5 5 5 5 5 5 9038100 14536000 264950 15863000 14984000 18694000 11820000 11470000 11095000 10651000 12784000 8417400 13568000 1079500 16132000 14304000 18707000 12133000 12002000 11379000 10436000 12280000 3 3 3 3 3 3 3 3 3 3 3 5909400 9606000 94628 11609000 7251900 5138600 4964900 7977300 7197100 7888200 9017300 5502900 8970900 596920 11605000 6901700 5697800 5224800 7964800 7288700 7707700 8642300 2 2 2 2 2 2 2 2 2 2 2 1809800000 1081200000 728590000 1884 730 1766 10935;10936;10937 13153;13154;13155;13156;13157 13154 5 ATDFVADR Unmodified 893.4243 0.42429566 1083 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 35.533 35.407 2 0.0033559 11313 20211116_3441_TMUAki_TMT10x_S_F3 101.25 49.917 1729800 2810200 16577 2959600 2531800 2302300 2033500 1635700 1827600 1692200 2233500 1610700 2622700 170090 2998900 2416100 2371000 2082300 1698400 1882700 1650400 2142000 3 3 3 3 3 3 3 3 3 3 3 872870 1432900 11570 1499700 1545700 1500700 1053800 774130 922790 850560 1103700 812820 1337300 92573 1525200 1470400 1512400 1090600 826040 950930 827550 1059100 1 1 1 1 1 1 1 1 1 1 1 856910 1377300 5007.3 1459900 986150 801620 979700 861620 904820 841680 1129800 797900 1285500 77520 1473600 945710 858590 991770 872410 931760 822850 1082900 2 2 2 2 2 2 2 2 2 2 2 94074000 42020000 52054000 1885 1083 1767 10938;10939;10940 13158;13159;13160 13160 3 ATDFVVPGPGKVEITYTPSDGTQK Unmodified 2506.2591 0.2591344 364 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 3 3 3 3 64.362 64.635 3;4 1.1126E-16 19853 20211116_3445_TMUAki_TMT10x_S_F6 129.93 114.68 39214000 61078000 752550 58853000 53985000 55508000 46434000 54144000 51845000 51959000 54764000 36514000 56984000 3730800 60147000 51591000 56723000 47662000 55053000 52610000 50836000 52738000 10 10 6 10 10 10 10 10 10 10 10 13479000 19256000 7825.2 17828000 13706000 24527000 15058000 16215000 16514000 16617000 16462000 12548000 17962000 843900 18388000 13158000 24386000 15248000 16917000 16735000 16212000 15882000 3 3 1 3 3 3 3 3 3 3 3 25735000 41822000 744720 41025000 40279000 30981000 31376000 37929000 35330000 35342000 38302000 23966000 39021000 2886900 41758000 38433000 32337000 32414000 38136000 35875000 34624000 36856000 7 7 5 7 7 7 7 7 7 7 7 8765600000 4879300000 3886300000 1886 364 1768 10941;10942;10943;10944;10945;10946 13161;13162;13163;13164;13165;13166;13167;13168;13169;13170 13168 10 ATDVMIAGK Oxidation (M) 920.46372 0.46371763 786 P23526;P23526-2 AHCY Adenosylhomocysteinase yes no 0 0 1 0 By MS/MS 4 0 1 1 37.225 37.358 2 0.0083317 9627 20211116_3442_TMUAki_TMT10x_S_F4 77.318 50.356 506920 829910 0 882920 466470 423420 494400 367100 358350 381950 568870 471950 774590 36685 890110 447660 458430 495820 376530 377980 372420 542250 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 506920 829910 0 882920 466470 423420 494400 367100 358350 381950 568870 471950 774590 36685 890110 447660 458430 495820 376530 377980 372420 542250 2 2 0 2 2 2 2 2 2 2 2 29393000 0 29393000 1887 786 1769 10947 13171;13172 13172 926 2 ATEDGEEDEEMIESIENLEDLK Oxidation (M) 2553.08 0.079968562 1114 P49736 MCM2 DNA replication licensing factor MCM2 yes yes 0 0 1 0 By MS/MS By MS/MS 1.5 0.866 3 1 2 2 60.112 60.091 2;3 8.4014E-32 27082 20211116_3439_TMUAki_TMT10x_S_F1 169.79 149.69 9700300 15959000 51225 15236000 10585000 16732000 11448000 10827000 12388000 11107000 13355000 9032200 14889000 848810 15617000 10174000 16821000 11596000 11315000 12596000 10837000 12853000 4 4 3 4 4 4 4 4 4 4 4 6049600 9387800 51225 9005600 5401900 12101000 6383200 6194300 7403900 6487400 7836700 5633100 8758400 540220 9260500 5207300 12004000 6455000 6604800 7502900 6323900 7546400 3 3 3 3 3 3 3 3 3 3 3 3650700 6571200 0 6230500 5183600 4631400 5064800 4633100 4984000 4620000 5518500 3399000 6130400 308600 6356300 4966300 4816800 5141200 4710100 5092900 4512700 5306900 1 1 0 1 1 1 1 1 1 1 1 2780000000 1245000000 1535000000 1888 1114 1770 10948;10949;10950;10951 13173;13174;13175;13176;13177 13177 1476 5 ATEDGEEDEEMIESIENLEDLK Unmodified 2537.0851 0.08505394 1114 P49736 MCM2 DNA replication licensing factor MCM2 yes yes 0 0 0 0 By MS/MS By MS/MS 1.25 0.433 6 2 1 7 72.573 72.56 3 1.5932E-55 28342 20211116_3439_TMUAki_TMT10x_S_F1 219.66 210.38 15151000 24174000 42628 27162000 15304000 11628000 16358000 5336900 5444300 7318500 14450000 14107000 22568000 1259100 27266000 14701000 12662000 16200000 5803000 6335700 7066000 13661000 7 7 5 7 7 7 7 7 7 7 7 4827100 7759200 8857.3 9206500 4236800 4686800 4687400 1365900 1580200 2223900 4543900 4494600 7245600 400190 9222300 4074300 4978700 4634800 1582100 1848700 2136700 4291600 1 1 1 1 1 1 1 1 1 1 1 10324000 16415000 33771 17956000 11067000 6940900 11671000 3971000 3864100 5094500 9906000 9612200 15322000 858900 18044000 10627000 7683600 11565000 4220900 4487000 4929300 9368900 6 6 4 6 6 6 6 6 6 6 6 5326500000 3033800000 2292700000 1889 1114 1770 10952;10953;10954;10955;10956;10957;10958;10959 13178;13179;13180;13181;13182;13183;13184;13185;13186 13179 9 ATEDGEEDEEMIESIENLEDLKGHSVR Oxidation (M) 3089.3619 0.3618975 1114 P49736 MCM2 DNA replication licensing factor MCM2 yes yes 0 0 1 1 By MS/MS 1 0 1 1 62.751 62.751 4 6.3178E-33 19240 20211116_3428_TMUAki_TMT10x_P_F1 165.85 161.16 4327200 7308500 94939 4798100 6952500 18288000 8573300 16013000 14820000 13203000 9421200 4029800 6810200 484010 5273900 6712900 17747000 8804900 16312000 14612000 13011000 9255500 2 2 2 2 2 2 2 2 2 2 2 4327200 7308500 94939 4798100 6952500 18288000 8573300 16013000 14820000 13203000 9421200 4029800 6810200 484010 5273900 6712900 17747000 8804900 16312000 14612000 13011000 9255500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 876760000 876760000 0 1890 1114 1771 10960 13187;13188 13188 1476 2 ATEGMILTNHDHQIR Acetyl (Protein N-term);Oxidation (M) 1792.8526 0.85263084 2913 Q9NQX3;Q9NQX3-2 GPHN Gephyrin;Molybdopterin adenylyltransferase;Molybdopterin molybdenumtransferase yes no 1 0 1 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 33.212 33.135 3 3.7857E-20 7263 20211116_3428_TMUAki_TMT10x_P_F1 130.24 118.32 805310 1210600 14608 1296900 1204200 1097200 888620 907030 1000400 734500 1114200 749930 1129900 78075 1313900 1147500 1125800 921320 926640 1016900 724460 1071300 6 6 4 6 6 6 6 6 6 6 6 303770 441020 2686.4 508230 754670 649320 385870 428880 482320 324600 452420 282860 411770 33829 515840 714490 647830 413680 444060 485390 321320 437360 2 2 1 2 2 2 2 2 2 2 2 501530 769550 11922 788630 449480 447920 502740 478140 518060 409900 661810 467060 718140 44246 798090 433040 478000 507640 482580 531470 403140 633970 4 4 3 4 4 4 4 4 4 4 4 255280000 194380000 60900000 1891 2913 1772 10961;10962;10963;10964;10965 13189;13190;13191;13192;13193;13194 13189 3018 6 ATEGMILTNHDHQIR Acetyl (Protein N-term) 1776.8577 0.85771622 2913 Q9NQX3;Q9NQX3-2 GPHN Gephyrin;Molybdopterin adenylyltransferase;Molybdopterin molybdenumtransferase yes no 1 0 0 0 By MS/MS 2.5 0.5 1 1 2 37.033 36.954 3 2.606E-10 8636 20211116_3440_TMUAki_TMT10x_S_F2 112.72 98.466 605550 1171600 16382 1069400 702020 616110 688730 801230 794960 714880 904490 563950 1092800 66823 1091400 673790 659770 702590 802710 807970 701750 869140 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 605550 1171600 16382 1069400 702020 616110 688730 801230 794960 714880 904490 563950 1092800 66823 1091400 673790 659770 702590 802710 807970 701750 869140 2 2 2 2 2 2 2 2 2 2 2 69293000 0 69293000 1892 2913 1772 10966;10967 13195;13196 13195 2 ATEILNLLLK Unmodified 1126.6962 0.69616041 262 O60282;O60282-2 KIF5C Kinesin heavy chain isoform 5C yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 80.617 80.577 2 4.8573E-05 26710 20211116_3440_TMUAki_TMT10x_S_F2 101.97 61.973 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1893 262 1773 10968;10969 13197;13198 13198 2 ATENDIANFFSPLNPIR Unmodified 1917.9585 0.95847612 893 P31942;P31942-2;P31942-3;P31942-4;P31942-5;P31942-6 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes no 0 0 0 0 By MS/MS By MS/MS 5.81 2.5 6 4 2 2 4 5 10 20 33 20 70.132 70.144 2;3 4.0399E-162 25501 20211116_3447_TMUAki_TMT10x_S_F8 422.91 395.33 238970000 392810000 1134500 358280000 275010000 382100000 305520000 246970000 235160000 267420000 302070000 222490000 366410000 18745000 368300000 264360000 384750000 306120000 258530000 244690000 260330000 289330000 49 49 24 49 49 49 49 49 49 49 49 135200000 223020000 777090 199020000 126940000 249790000 158890000 135590000 133150000 150760000 168870000 125890000 208010000 10875000 205490000 122510000 248770000 158700000 144080000 137850000 146620000 161800000 33 33 16 33 33 33 33 33 33 33 33 103760000 169790000 357410 159260000 148070000 132300000 146620000 111380000 102010000 116660000 133200000 96601000 158390000 7870700 162810000 141860000 135970000 147420000 114460000 106840000 113720000 127530000 16 16 8 16 16 16 16 16 16 16 16 114270000000 54877000000 59398000000 1894 893 1774 10970;10971;10972;10973;10974;10975;10976;10977;10978;10979;10980;10981;10982;10983;10984;10985;10986;10987;10988;10989;10990;10991;10992;10993;10994;10995;10996;10997;10998;10999;11000;11001;11002;11003;11004;11005;11006;11007;11008;11009;11010;11011;11012;11013;11014;11015;11016;11017;11018;11019;11020;11021;11022 13199;13200;13201;13202;13203;13204;13205;13206;13207;13208;13209;13210;13211;13212;13213;13214;13215;13216;13217;13218;13219;13220;13221;13222;13223;13224;13225;13226;13227;13228;13229;13230;13231;13232;13233;13234;13235;13236;13237;13238;13239;13240;13241;13242;13243;13244;13245;13246;13247;13248;13249;13250;13251;13252;13253;13254;13255;13256;13257;13258;13259 13254 61 ATENDIYNFFSPLNPMR Oxidation (M) 2043.936 0.93602612 1247 P55795 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2 yes yes 0 0 1 0 By MS/MS By MS/MS 7.5 0.5 4 4 4 4 78.482 78.5 2;3 3.4615E-15 25795 20211116_3436_TMUAki_TMT10x_P_F8 153.54 138.5 24992000 42498000 0 36966000 29240000 42673000 33078000 30856000 30835000 32989000 33757000 23267000 39635000 1601900 38188000 28109000 42855000 33282000 32033000 31571000 32131000 32473000 8 8 0 8 8 8 8 8 8 8 8 14725000 24042000 0 21261000 14076000 29571000 17760000 17590000 18133000 19113000 19018000 13710000 22423000 1066000 22011000 13579000 29343000 17834000 18534000 18462000 18604000 18319000 4 4 0 4 4 4 4 4 4 4 4 10266000 18456000 0 15705000 15165000 13102000 15318000 13267000 12702000 13876000 14739000 9557100 17211000 535850 16177000 14530000 13512000 15448000 13499000 13109000 13527000 14155000 4 4 0 4 4 4 4 4 4 4 4 11218000000 5763400000 5454600000 1895 1247 1775 11023;11024;11025;11026;11027;11028;11029;11030 13260;13261;13262;13263;13264;13265;13266;13267 13263 1693 8 ATENDIYNFFSPLNPMR Unmodified 2027.9411 0.9411115 1247 P55795 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2 yes yes 0 0 0 0 By MS/MS By MS/MS 7.75 0.433 1 3 3 1 79.708 79.715 2;3 4.6483E-21 26304 20211116_3436_TMUAki_TMT10x_P_F8 160.84 138.16 10697000 17755000 388240 17335000 12443000 13873000 13633000 7735200 7788400 9545700 12685000 9962200 16565000 1235600 17663000 11982000 14209000 13585000 8228600 8352900 9248300 12085000 4 4 2 4 4 4 4 4 4 4 4 5079700 7664400 0 7910100 4528600 7300800 5344900 2884800 3077500 3728100 5494900 4729400 7152600 375910 8043200 4360300 7375900 5308700 3181100 3315800 3606400 5225900 2 2 0 2 2 2 2 2 2 2 2 5616800 10090000 388240 9425100 7914200 6572300 8288200 4850400 4710900 5817600 7190300 5232700 9412700 859680 9619500 7621400 6832700 8276800 5047400 5037100 5641900 6859400 2 2 2 2 2 2 2 2 2 2 2 2292100000 1533200000 758870000 1896 1247 1775 11031;11032;11033;11034 13268;13269;13270;13271 13268 4 ATENDIYNFFSPLNPVR Unmodified 1995.969 0.96904081 894;1181 P52597;P31943 HNRNPF;HNRNPH1 Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS 4.57 2.79 12 22 10 2 4 4 8 26 58 30 58.844 58.802 2;3 1.9642E-206 25481 20211116_3447_TMUAki_TMT10x_S_F8 452.1 423.72 345790000 566180000 1024800 527910000 389900000 523080000 417820000 346240000 340220000 375020000 436270000 321930000 528160000 22534000 541190000 374270000 529200000 419950000 361820000 352920000 365070000 417880000 109 109 41 109 109 109 109 109 109 109 109 206030000 329500000 613020 312530000 187300000 362620000 230470000 204020000 202610000 224280000 255020000 191820000 307390000 11961000 320780000 180520000 362760000 230650000 216040000 209200000 218210000 244380000 63 63 23 63 63 63 63 63 63 63 63 139750000 236680000 411780 215390000 202600000 160460000 187350000 142220000 137600000 150740000 181250000 130110000 220770000 10573000 220410000 193750000 166440000 189290000 145770000 143710000 146870000 173500000 46 46 18 46 46 46 46 46 46 46 46 201790000000 102600000000 99190000000 1897 1181;894 1776 11035;11036;11037;11038;11039;11040;11041;11042;11043;11044;11045;11046;11047;11048;11049;11050;11051;11052;11053;11054;11055;11056;11057;11058;11059;11060;11061;11062;11063;11064;11065;11066;11067;11068;11069;11070;11071;11072;11073;11074;11075;11076;11077;11078;11079;11080;11081;11082;11083;11084;11085;11086;11087;11088;11089;11090;11091;11092;11093;11094;11095;11096;11097;11098;11099;11100;11101;11102;11103;11104;11105;11106;11107;11108;11109;11110;11111;11112;11113;11114;11115;11116;11117;11118;11119;11120;11121;11122 13272;13273;13274;13275;13276;13277;13278;13279;13280;13281;13282;13283;13284;13285;13286;13287;13288;13289;13290;13291;13292;13293;13294;13295;13296;13297;13298;13299;13300;13301;13302;13303;13304;13305;13306;13307;13308;13309;13310;13311;13312;13313;13314;13315;13316;13317;13318;13319;13320;13321;13322;13323;13324;13325;13326;13327;13328;13329;13330;13331;13332;13333;13334;13335;13336;13337;13338;13339;13340;13341;13342;13343;13344;13345;13346;13347;13348;13349;13350;13351;13352;13353;13354;13355;13356;13357;13358;13359;13360;13361;13362;13363;13364;13365;13366;13367;13368;13369;13370;13371;13372;13373;13374;13375;13376;13377;13378;13379;13380;13381;13382;13383;13384;13385;13386;13387;13388;13389;13390;13391;13392;13393;13394;13395 13379 124 ATEPHMLETYTPEVTK Oxidation (M) 1861.8768 0.87677991 3132 Q9UIA9 XPO7 Exportin-7 yes yes 0 0 1 0 By MS/MS 4 0 1 1 42.848 42.935 3 0.00017994 11537 20211116_3431_TMUAki_TMT10x_P_F4 75.018 63.913 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1898 3132 1777 11123 13396 13396 3151 1 ATEPVIAFYEK Unmodified 1266.6496 0.64960415 474 P00568 AK1 Adenylate kinase isoenzyme 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 2 4 3 3 62.455 62.59 2;3 3.4413E-15 18696 20211116_3444_TMUAki_TMT10x_S_F5 177.57 138.27 4302700 6721200 28680 8007200 6645200 8824900 5434000 3865400 4305200 4141000 5258300 4006400 6276400 416260 8090100 6343000 8828300 5540300 4188700 4463000 4032900 5043000 1 1 1 1 1 1 1 1 1 1 1 4302700 6721200 28680 8007200 6645200 8824900 5434000 3865400 4305200 4141000 5258300 4006400 6276400 416260 8090100 6343000 8828300 5540300 4188700 4463000 4032900 5043000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 969530000 969530000 0 1899 474 1778 11124;11125;11126;11127;11128;11129 13397;13398;13399;13400;13401 13401 5 ATEPVIAFYEKR Unmodified 1422.7507 0.75071518 474 P00568 AK1 Adenylate kinase isoenzyme 1 yes yes 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 52.466 52.576 3 6.5946E-06 14878 20211116_3445_TMUAki_TMT10x_S_F6 108.32 82.623 10885000 19003000 115260 19170000 19292000 23589000 13474000 24235000 23524000 19202000 16978000 10136000 17732000 1127600 19611000 18358000 23773000 14282000 24457000 23260000 18961000 16581000 2 2 2 2 2 2 2 2 2 2 2 5815200 9698100 107400 10042000 12509000 17905000 8276400 12580000 12023000 10020000 8640100 5415300 9050600 675960 10338000 11894000 17635000 8732400 12982000 11947000 9891300 8439500 1 1 1 1 1 1 1 1 1 1 1 5069600 9304600 7859.8 9128600 6782500 5684300 5197500 11656000 11501000 9182400 8338200 4720400 8681500 451620 9273600 6464000 6137400 5550100 11475000 11312000 9069900 8141400 1 1 1 1 1 1 1 1 1 1 1 549880000 287560000 262330000 1900 474 1779 11130;11131 13402;13403 13403 2 ATEQSLDPPIEEEHQLR Unmodified 1990.9596 0.95959833 1100 P49454 CENPF Centromere protein F yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 40.462 40.534 3 5.1428E-11 11871 20211116_3429_TMUAki_TMT10x_P_F2 124.43 104.05 168930 334890 8899 388070 170280 133050 149980 298930 338250 235440 281580 157360 312680 22318 388320 163300 155000 159020 293660 333860 232560 273390 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 168930 334890 8899 388070 170280 133050 149980 298930 338250 235440 281580 157360 312680 22318 388320 163300 155000 159020 293660 333860 232560 273390 1 1 1 1 1 1 1 1 1 1 1 32061000 0 32061000 1901 1100 1780 11132;11133 13404;13405 13404 2 ATESGAQSAPLPMEGVDISPK Oxidation (M) 2100.0045 0.0044996155 1497 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 0 0 1 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 51.702 51.742 3 2.5476E-08 15540 20211116_3442_TMUAki_TMT10x_S_F4 100.59 82.888 7621500 13968000 147700 16281000 12240000 18241000 9466300 14783000 14076000 11672000 12161000 7097500 13042000 832240 16475000 11676000 18384000 9889800 15112000 14050000 11528000 11791000 5 5 4 5 5 5 5 5 5 5 5 4911700 9040300 89600 10191000 10089000 15924000 7923400 10249000 8991600 7487300 7775800 4573900 8439900 563230 10401000 9625200 15741000 8183400 10624000 9057500 7426200 7538600 3 3 3 3 3 3 3 3 3 3 3 2709800 4927300 58102 6089400 2150800 2317500 1542900 4534700 5084000 4184900 4385300 2523600 4602100 269000 6073800 2050400 2643400 1706400 4488200 4992400 4101600 4252000 2 2 1 2 2 2 2 2 2 2 2 1195700000 876830000 318910000 1902 1497 1781 11134;11135;11136 13406;13407;13408;13409;13410 13409 2028 5 ATESGAQSAPLPMEGVDISPK Unmodified 2084.0096 0.0095849934 1497 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 0 0 0 0 By MS/MS 4 0 1 1 60.855 60.973 3 0.0053301 18873 20211116_3431_TMUAki_TMT10x_P_F4 50.202 23.473 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1903 1497 1781 11137 13411 13411 1 ATETVELHK Acetyl (Protein N-term) 1068.5451 0.54513908 1445 P82979 SARNP SAP domain-containing ribonucleoprotein yes yes 1 0 0 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 38.455 38.32 2 1.6069E-05 9401 20211116_3428_TMUAki_TMT10x_P_F1 69.423 53.27 5388400 8641500 76659 8553000 7792200 7770900 6405600 5772400 6020600 5570600 8021200 5017600 8063100 541940 8720000 7440700 7919800 6558100 5963800 6212700 5448800 7675800 4 4 3 4 4 4 4 4 4 4 4 2553000 3994800 7250.5 3577400 4882800 5240100 3407300 2860000 2650500 2760300 3770200 2377100 3726000 251050 3703900 4645200 5182300 3509900 3025000 2769300 2700000 3602300 1 1 1 1 1 1 1 1 1 1 1 2835400 4646700 69408 4975600 2909400 2530800 2998300 2912400 3370100 2810300 4251000 2640500 4337100 290900 5016100 2795500 2737600 3048200 2938900 3443500 2748900 4073500 3 3 2 3 3 3 3 3 3 3 3 751140000 445300000 305840000 1904 1445 1782 11138;11139;11140;11141;11142 13412;13413;13414;13415;13416 13412 5 ATFCLPILGVK Unmodified 1217.6842 0.68421552 434 O95478 NSA2 Ribosome biogenesis protein NSA2 homolog yes yes 0 0 0 0 By MS/MS 4 0 1 1 78.207 78.224 2 0.00011564 25956 20211116_3431_TMUAki_TMT10x_P_F4 95.311 66.568 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1905 434 1783 11143 13417 13417 1 ATFDAISK Unmodified 851.43888 0.43888309 687 P15880 RPS2 40S ribosomal protein S2 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 46.811 46.969 2 0.0014982 13430 20211116_3433_TMUAki_TMT10x_P_F5 121.05 76.601 4077000 6257400 80379 6166400 7907100 8621400 5035100 4334700 4851800 4326100 5375900 3796700 5838500 466570 6333900 7514400 8535200 5251800 4623300 4962500 4225400 5169800 1 1 1 1 1 1 1 1 1 1 1 4077000 6257400 80379 6166400 7907100 8621400 5035100 4334700 4851800 4326100 5375900 3796700 5838500 466570 6333900 7514400 8535200 5251800 4623300 4962500 4225400 5169800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 288090000 288090000 0 1906 687 1784 11144;11145 13418;13419 13418 2 ATFIKVPQNQNGK Unmodified 1443.7834 0.78341229 729 P19338 NCL Nucleolin yes yes 0 0 0 1 By MS/MS 3 0 2 2 41.722 41.776 3;4 1.0048E-09 12621 20211116_3430_TMUAki_TMT10x_P_F3 137.62 109.08 1049100 1771800 13013 1774600 5151400 3715800 1879800 2302800 3090500 1706400 2006000 976880 1653300 156560 1839200 4857900 3633900 2115300 2394700 3052600 1691100 1968700 4 4 4 4 4 4 4 4 4 4 4 1049100 1771800 13013 1774600 5151400 3715800 1879800 2302800 3090500 1706400 2006000 976880 1653300 156560 1839200 4857900 3633900 2115300 2394700 3052600 1691100 1968700 4 4 4 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 76390000 76390000 0 1907 729 1785 11146;11147 13420;13421;13422;13423 13423 4 ATFISVQLKK Acetyl (Protein N-term) 1175.6914 0.69140938 2301 Q8WUM4;Q8WUM4-2;Q8WUM4-3 PDCD6IP Programmed cell death 6-interacting protein yes no 1 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 66.677 66.366 2 6.4108E-09 21056 20211116_3440_TMUAki_TMT10x_S_F2 69.825 30.282 4510100 6537300 55338 6097400 4958800 7559400 4655900 3998200 4577000 4446600 4567200 4199800 6098300 431780 6273300 4750400 7530800 4736000 4258200 4659400 4324300 4406100 1 1 1 1 1 1 1 1 1 1 1 4510100 6537300 55338 6097400 4958800 7559400 4655900 3998200 4577000 4446600 4567200 4199800 6098300 431780 6273300 4750400 7530800 4736000 4258200 4659400 4324300 4406100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 179790000 179790000 0 1908 2301 1786 11148;11149 13424;13425 13425 2 ATFSGPAGPILSLNPQEDVEFQK Acetyl (Protein N-term) 2486.2329 0.23291965 2730 Q9BYG3 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes yes 1 0 0 0 By MS/MS By MS/MS 4.33 1.49 1 1 1 1 2 3 3 80.932 80.918 3 1.4057E-11 26206 20211116_3444_TMUAki_TMT10x_S_F5 108.18 92.758 16125000 25645000 100700 24544000 19142000 24802000 20781000 17988000 18762000 21334000 22337000 15014000 23925000 1348000 25120000 18394000 25098000 20931000 18733000 19302000 20698000 21437000 8 8 4 8 8 8 8 8 8 8 8 6650900 9827600 38065 9693700 6436900 14146000 7982800 8804600 9692100 10835000 9408700 6192700 9169700 544740 9965200 6210600 14017000 8069400 9282200 9775200 10498000 9085000 4 4 2 4 4 4 4 4 4 4 4 9474100 15817000 62632 14850000 12705000 10656000 12798000 9183900 9069600 10499000 12929000 8821100 14756000 803230 15155000 12183000 11081000 12861000 9451200 9526800 10200000 12352000 4 4 2 4 4 4 4 4 4 4 4 3938300000 1925600000 2012800000 1909 2730 1787 11150;11151;11152;11153;11154;11155 13426;13427;13428;13429;13430;13431;13432 13431 7 ATGAATPK Unmodified 715.38645 0.38645359 606 P10412 HIST1H1E Histone H1.4 yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 28.078 28.066 2 0.0032559 5987 20211116_3433_TMUAki_TMT10x_P_F5 101.54 55.116 202690 284100 0 254490 216890 278140 171160 129670 141410 127770 226490 188680 264990 12378 262070 206510 278560 175090 139270 148180 124870 215860 1 1 0 1 1 1 1 1 1 1 1 202690 284100 0 254490 216890 278140 171160 129670 141410 127770 226490 188680 264990 12378 262070 206510 278560 175090 139270 148180 124870 215860 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9443300 9443300 0 1910 606 1788 11156;11157 13433 13433 1 ATGANATPLDFPSK Acetyl (Protein N-term) 1430.7042 0.70415892 1819 Q15637;Q15637-6;Q15637-4;Q15637-2;Q15637-3 SF1 Splicing factor 1 yes no 1 0 0 0 By MS/MS 4 0 1 1 64.462 64.304 2 0.00033185 20733 20211116_3442_TMUAki_TMT10x_S_F4 48.004 30.618 1994400 3613900 102150 4063600 2455800 2368400 2229600 3046700 2842000 2484600 3272300 1857800 3373900 267020 4088400 2355200 2532600 2292300 3046600 2879800 2449700 3143400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1994400 3613900 102150 4063600 2455800 2368400 2229600 3046700 2842000 2484600 3272300 1857800 3373900 267020 4088400 2355200 2532600 2292300 3046600 2879800 2449700 3143400 1 1 1 1 1 1 1 1 1 1 1 401640000 0 401640000 1911 1819 1789 11158 13434 13434 1 ATGATQQDANASSLLDIYSFWLK Unmodified 2499.2282 0.22816862 1740 Q14978;Q14978-2 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 0 0 0 0 By MS/MS 8 0 1 1 81.836 81.841 3 1.6699E-15 27159 20211116_3436_TMUAki_TMT10x_P_F8 129.43 115.12 2178100 3337400 0 3276200 2275000 3347800 2813700 1533000 1522900 1776800 2194500 2027900 3113900 168630 3347600 2194000 3365300 2785900 1657600 1629600 1725300 2096200 2 2 0 2 2 2 2 2 2 2 2 2178100 3337400 0 3276200 2275000 3347800 2813700 1533000 1522900 1776800 2194500 2027900 3113900 168630 3347600 2194000 3365300 2785900 1657600 1629600 1725300 2096200 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 163050000 163050000 0 1912 1740 1790 11159 13435;13436 13435 2 ATGDETGAKVER Unmodified 1232.5997 0.59969384 1305 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 27.915 27.655 3 2.9958E-07 8173 20211116_3441_TMUAki_TMT10x_S_F3 126.1 95.208 262500 492230 105.71 353660 342270 407830 329150 205130 243590 215590 328650 244410 458780 21779 371390 327780 407570 331910 219110 254580 210130 314410 2 2 1 2 2 2 2 2 2 2 2 91907 158930 105.71 136820 105450 169870 101200 74788 91339 77283 122090 85575 148220 7907.9 141640 101010 168880 102570 80913 94445 75376 116830 1 1 1 1 1 1 1 1 1 1 1 170600 333290 0 216840 236820 237960 227950 130340 152250 138310 206560 158830 310560 13871 229750 226770 238690 229340 138190 160130 134750 197580 1 1 0 1 1 1 1 1 1 1 1 24029000 5528700 18500000 1913 1305 1791 11160;11161 13437;13438 13438 2 ATGEADVEFVTHEDAVAAMSK Oxidation (M) 2192.9896 0.98957783 893 P31942;P31942-2;P31942-3;P31942-4;P31942-5;P31942-6 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes no 0 0 1 0 By MS/MS By MS/MS 2.5 1.12 4 4 4 4 8 8 53.032 52.904 3;4 2.483E-26 16717 20211116_3429_TMUAki_TMT10x_P_F2 165.3 45.198 74593000 131900000 1035700 128000000 104380000 148430000 84787000 143480000 145770000 128580000 117570000 69459000 123060000 6647400 131160000 99638000 149840000 88915000 145680000 144620000 126190000 114290000 30 30 17 30 30 30 30 30 30 30 30 38331000 64915000 513950 63123000 63707000 107750000 51582000 72436000 75472000 65064000 59776000 35692000 60566000 3465300 65190000 60801000 106220000 53695000 75210000 75178000 63849000 58149000 13 13 6 13 13 13 13 13 13 13 13 36262000 66981000 521780 64875000 40673000 40681000 33205000 71040000 70295000 63514000 57794000 33767000 62493000 3182100 65971000 38837000 43618000 35220000 70471000 69447000 62341000 56138000 17 17 11 17 17 17 17 17 17 17 17 21852000000 12550000000 9302300000 1914 893 1792 11162;11163;11164;11165;11166;11167;11168;11169;11170;11171;11172;11173;11174;11175;11176;11177 13439;13440;13441;13442;13443;13444;13445;13446;13447;13448;13449;13450;13451;13452;13453;13454;13455;13456;13457;13458;13459;13460;13461;13462;13463;13464;13465;13466;13467;13468 13444 1088 30 ATGEADVEFVTHEDAVAAMSK Unmodified 2176.9947 0.99466321 893 P31942;P31942-2;P31942-3;P31942-4;P31942-5;P31942-6 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes no 0 0 0 0 By MS/MS By MS/MS 3.3 1.1 1 1 3 4 1 5 5 60.352 60.228 3;4 2.612E-20 19078 20211116_3442_TMUAki_TMT10x_S_F4 159.04 25.836 40127000 62817000 319970 71795000 46557000 49217000 47471000 25661000 20396000 28305000 43350000 37363000 58648000 3578200 72271000 44674000 51002000 47266000 27358000 22749000 27535000 41107000 10 10 5 10 10 10 10 10 10 10 10 23526000 35486000 260370 40262000 27819000 35954000 30726000 14621000 11394000 15962000 24916000 21906000 33130000 2155600 40672000 26757000 36414000 30417000 15983000 12917000 15534000 23617000 6 6 4 6 6 6 6 6 6 6 6 16601000 27330000 59605 31533000 18738000 13262000 16745000 11039000 9002100 12342000 18434000 15457000 25518000 1422600 31598000 17918000 14588000 16849000 11375000 9831500 12000000 17491000 4 4 1 4 4 4 4 4 4 4 4 7644700000 5144200000 2500400000 1915 893 1792 11178;11179;11180;11181;11182;11183;11184;11185;11186;11187 13469;13470;13471;13472;13473;13474;13475;13476;13477;13478;13479 13477 11 ATGEADVHFETHEDAVAAMLK Oxidation (M) 2257.0321 0.03211135 1569 Q12849;Q12849-5 GRSF1 G-rich sequence factor 1 yes no 0 0 1 0 By MS/MS By MS/MS 3.25 1.2 1 1 2 3 1 3 5 46.377 46.41 4 4.2959E-10 15504 20211116_3441_TMUAki_TMT10x_S_F3 104.03 88.937 16052000 27017000 185720 29166000 22359000 25505000 17742000 21458000 21222000 18584000 22585000 14947000 25218000 1353700 29548000 21329000 26117000 18345000 21935000 21485000 18269000 21744000 9 9 6 9 9 9 9 9 9 9 9 8006200 12629000 157820 14346000 14510000 18601000 10722000 10368000 10521000 9162400 10991000 7455700 11791000 892750 14578000 13827000 18502000 11068000 10921000 10728000 8998100 10588000 4 4 3 4 4 4 4 4 4 4 4 8045800 14388000 27897 14820000 7848500 6904000 7019700 11090000 10701000 9421700 11594000 7491100 13427000 460980 14970000 7502700 7615700 7277700 11014000 10757000 9270500 11156000 5 5 3 5 5 5 5 5 5 5 5 2780800000 1456300000 1324500000 1916 1569 1793 11188;11189;11190;11191;11192;11193;11194;11195 13480;13481;13482;13483;13484;13485;13486;13487;13488 13486 2111 9 ATGEGFVEFR Unmodified 1111.5298 0.52982336 2949 Q9NTZ6 RBM12 RNA-binding protein 12 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 48.582 48.461 2 5.7471E-09 16482 20211116_3441_TMUAki_TMT10x_S_F3 177.91 153.28 10377000 17192000 8179.1 18990000 13342000 14157000 10862000 13733000 14322000 12561000 14753000 9661000 16048000 775870 19174000 12722000 14710000 11254000 13949000 14434000 12316000 14218000 5 5 1 5 5 5 5 5 5 5 5 4333600 7108700 0 7826100 8078200 9458200 5718600 5983100 6187900 5201400 6173200 4034700 6635900 379220 7957700 7684300 9456600 5938600 6235200 6274100 5112200 5955500 2 2 0 2 2 2 2 2 2 2 2 6043400 10083000 8179.1 11164000 5263800 4698400 5143300 7749700 8134000 7359200 8579500 5626300 9412500 396640 11216000 5038100 5253800 5315900 7713700 8159900 7203400 8262500 3 3 1 3 3 3 3 3 3 3 3 1018700000 335210000 683450000 1917 2949 1794 11196;11197;11198;11199;11200;11201 13489;13490;13491;13492;13493;13494 13493 6 ATGEGFVEFRNEADYK Unmodified 1831.8377 0.83769228 2949 Q9NTZ6 RBM12 RNA-binding protein 12 yes yes 0 0 0 1 By MS/MS By MS/MS 4.2 1.33 1 2 1 1 2 3 50.457 50.55 3 6.1387E-15 15089 20211116_3442_TMUAki_TMT10x_S_F4 144.73 124.62 13574000 23063000 143270 26521000 16569000 15702000 12580000 18496000 17707000 17536000 19276000 12640000 21533000 1137100 26649000 15795000 16726000 13127000 18635000 17845000 17166000 18546000 4 4 3 4 4 4 4 4 4 4 4 3123300 5439700 96533 5995000 5501000 7236600 4535900 4696500 4763800 4143400 4871500 2908900 5077900 382210 6095200 5256200 7238500 4658500 4886700 4840200 4069500 4696100 1 1 1 1 1 1 1 1 1 1 1 10451000 17623000 46734 20526000 11068000 8465600 8043800 13799000 12943000 13392000 14404000 9731100 16455000 754920 20554000 10539000 9487900 8468900 13749000 13004000 13097000 13850000 3 3 2 3 3 3 3 3 3 3 3 2276200000 1177300000 1098900000 1918 2949 1795 11202;11203;11204;11205;11206 13495;13496;13497 13497 3 ATGFDGGNKADQLDYENFR Unmodified 2116.945 0.9450109 2258 Q8NI27 THOC2 THO complex subunit 2 yes yes 0 0 0 1 By MS/MS By MS/MS 5.2 1.17 2 1 1 1 2 3 52.581 52.787 3 1.02E-23 14649 20211116_3444_TMUAki_TMT10x_S_F5 165.17 159.84 22023000 39167000 70520 42480000 31300000 37806000 22641000 36353000 31467000 30607000 32537000 20506000 36559000 1973800 43033000 29796000 38770000 23692000 36863000 31664000 30129000 31354000 6 6 2 6 6 6 6 6 6 6 6 9888600 17015000 1034.2 17670000 20326000 28317000 15191000 17329000 13699000 13515000 14393000 9207100 15879000 942140 18139000 19359000 27943000 15631000 18060000 14027000 13357000 13863000 2 2 1 2 2 2 2 2 2 2 2 12135000 22152000 69485 24811000 10975000 9489700 7449600 19024000 17768000 17092000 18144000 11299000 20680000 1031700 24894000 10437000 10827000 8060200 18803000 17637000 16772000 17491000 4 4 1 4 4 4 4 4 4 4 4 1563100000 676170000 886900000 1919 2258 1796 11207;11208;11209;11210;11211 13498;13499;13500;13501;13502;13503 13502 6 ATGILLYGLASR Unmodified 1233.7081 0.70812208 1065 P47897;P47897-2 QARS Glutamine--tRNA ligase yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 68.747 68.62 2 0.0025933 22041 20211116_3431_TMUAki_TMT10x_P_F4 76.682 55.175 21766000 37837000 115360 34867000 25497000 49915000 23224000 32618000 28240000 29306000 28989000 20267000 35295000 1921400 36005000 24395000 49533000 23775000 33938000 28537000 28758000 27941000 4 4 3 4 4 4 3 4 4 4 4 17102000 29722000 37361 27190000 20044000 45050000 17894000 27454000 22926000 23695000 23012000 15924000 27724000 1451000 28184000 19165000 44396000 18362000 28689000 23106000 23297000 22196000 3 3 2 3 3 3 2 3 3 3 3 4663600 8115300 78002 7677400 5453200 4865300 5330800 5164200 5314200 5610400 5977400 4342900 7570800 470400 7821100 5230400 5136600 5413200 5248900 5430600 5461000 5745600 1 1 1 1 1 1 1 1 1 1 1 1678200000 1088900000 589350000 1920 1065 1797 11212;11213;11214;11215 13504;13505;13506;13507 13505 4 ATGISFAIHGNFSGTK Unmodified 1606.8104 0.81035532 1798 Q15393;Q15393-2 SF3B3 Splicing factor 3B subunit 3 yes no 0 0 0 0 By MS/MS 3 0 1 1 52.936 52.785 3 1.2032E-10 17221 20211116_3430_TMUAki_TMT10x_P_F3 126.63 111.43 4208200 6729100 109060 7397900 6152800 10407000 5607900 5232800 4563900 5384600 4999800 3919100 6281500 477770 7544800 5892500 10300000 5684500 5586000 4704100 5252600 4809700 2 2 2 2 2 2 2 2 2 2 2 4208200 6729100 109060 7397900 6152800 10407000 5607900 5232800 4563900 5384600 4999800 3919100 6281500 477770 7544800 5892500 10300000 5684500 5586000 4704100 5252600 4809700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 200320000 200320000 0 1921 1798 1798 11216 13508;13509 13508 2 ATGLGPVDRVETTR Unmodified 1470.7791 0.77905519 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 34.85 34.905 3 4.469E-09 8390 20211116_3431_TMUAki_TMT10x_P_F4 122.63 106.38 2291900 3602100 0 4431600 5851200 4933700 3066000 3008900 3277400 2599500 3792900 2133900 3364300 227470 4469900 5539600 4951900 3262100 3144100 3343200 2555600 3642900 3 3 0 3 3 3 3 3 3 3 3 1802200 2838900 0 3603400 5371600 4471900 2593900 2319900 2544500 2020500 3112200 1678000 2651900 191050 3635000 5080200 4453700 2774800 2458400 2610900 1985700 2984700 2 2 0 2 2 2 2 2 2 2 2 489630 763200 0 828220 479650 461790 472080 688940 732860 578950 680680 455870 712390 36417 834850 459450 498140 487320 685710 732300 569960 658240 1 1 0 1 1 1 1 1 1 1 1 187530000 155250000 32280000 1922 157 1799 11217;11218;11219 13510;13511;13512 13510 3 ATGPAPGPTGEREPAAGPGR Unmodified 1844.9129 0.91292291 2506 Q96JE9;Q96JE9-2 MAP6 Microtubule-associated protein 6 yes no 0 0 0 1 By MS/MS 4 0 1 1 28.833 28.878 3 9.0194E-07 5943 20211116_3431_TMUAki_TMT10x_P_F4 93.5 87.961 63675 112750 1901.3 91490 121760 124780 71934 54833 63019 73409 89097 59302 105130 7864.5 95334 115610 123500 75295 59837 65426 70929 85142 1 1 1 1 1 1 1 1 1 1 1 63675 112750 1901.3 91490 121760 124780 71934 54833 63019 73409 89097 59302 105130 7864.5 95334 115610 123500 75295 59837 65426 70929 85142 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10018000 10018000 0 1923 2506 1800 11220 13513 13513 1 ATGPPVSELITK Unmodified 1211.6762 0.67615325 693 P16401 HIST1H1B Histone H1.5 yes yes 0 0 0 0 By MS/MS By MS/MS 5.8 1.05 2 4 4 5 7 8 55.84 56.123 2;3 2.8268E-24 17698 20211116_3435_TMUAki_TMT10x_P_F7 251.43 185.16 86275000 133700000 1227300 172370000 150570000 150810000 97317000 118680000 140950000 113970000 129350000 80338000 124900000 8979400 172800000 143100000 154240000 102850000 122150000 141080000 111500000 125140000 23 23 15 23 23 23 23 23 23 23 23 45221000 67830000 807220 87414000 117200000 118940000 65734000 60287000 71525000 58079000 65762000 42110000 63366000 5386800 88265000 111120000 117900000 69547000 64190000 72307000 56814000 63617000 12 12 8 12 12 12 12 12 12 12 12 41053000 65871000 420030 84960000 33374000 31871000 31583000 58395000 69430000 55890000 63591000 38227000 61536000 3592700 84531000 31975000 36339000 33301000 57958000 68769000 54688000 61524000 11 11 7 11 11 11 11 11 11 11 11 23848000000 13678000000 10169000000 1924 693 1801 11221;11222;11223;11224;11225;11226;11227;11228;11229;11230;11231;11232;11233;11234;11235 13514;13515;13516;13517;13518;13519;13520;13521;13522;13523;13524;13525;13526;13527;13528;13529;13530;13531;13532;13533;13534;13535;13536;13537;13538 13523 25 ATGRPECFLTIQEGLASK Unmodified 1976.999 0.99896073 102 O00566 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes yes 0 0 0 1 By MS/MS 7.5 0.5 1 1 2 57.495 58.018 3 5.4938E-22 16882 20211116_3447_TMUAki_TMT10x_S_F8 149.34 133.03 5205700 8616800 0 10386000 4757500 4523600 4680800 5802100 5041200 5818700 6836400 4846600 8047000 377350 10383000 4556700 4998700 4763100 5835200 5176500 5682200 6539300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5205700 8616800 0 10386000 4757500 4523600 4680800 5802100 5041200 5818700 6836400 4846600 8047000 377350 10383000 4556700 4998700 4763100 5835200 5176500 5682200 6539300 1 1 0 1 1 1 1 1 1 1 1 781030000 0 781030000 1925 102 1802 11236;11237 13539;13540 13540 2 ATHDGAPELGAGGTR Unmodified 1408.6695 0.66950474 2719 Q9BXW7;Q9BXW7-2 CECR5 Cat eye syndrome critical region protein 5 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 28.305 28.05 3 3.9601E-05 8346 20211116_3441_TMUAki_TMT10x_S_F3 93.106 70.42 313310 458500 1245.1 467910 356240 429920 344100 287360 272320 312630 348710 291730 427870 27515 476110 341330 437110 347450 300110 282890 304290 334020 2 2 1 2 2 2 2 2 2 2 2 197140 286760 1245.1 286730 229980 314550 216090 185450 178360 195590 210470 183560 267580 17965 292930 220240 315820 218750 195380 184250 190610 202040 1 1 1 1 1 1 1 1 1 1 1 116170 171740 0 181180 126250 115370 128010 101900 93956 117030 138240 108160 160290 9550.3 183180 121090 121290 128700 104740 98645 113680 131980 1 1 0 1 1 1 1 1 1 1 1 14926000 4091100 10835000 1926 2719 1803 11238;11239 13541;13542 13542 2 ATHGQTCARPMCIPPSYADLGK Acetyl (Protein N-term);Oxidation (M) 2488.1297 0.12973368 1034 P45880 VDAC2 Voltage-dependent anion-selective channel protein 2 yes yes 1 0 1 1 By MS/MS By MS/MS 6.5 0.5 3 3 2 4 42.361 42.671 3 7.2652E-07 12656 20211116_3446_TMUAki_TMT10x_S_F7 53.201 43.83 3167100 5381600 32987 6189100 4934500 6744400 3792100 5058400 5002400 4383100 4283800 2948800 5024600 275040 6265100 4701900 6798600 3943700 5208000 5010700 4308600 4154700 7 7 2 7 7 7 7 7 7 7 7 2573700 4286000 30299 4877600 4505200 6380200 3488700 4259900 4226100 3702100 3536000 2396300 4001500 230890 4956700 4293600 6359400 3614700 4421500 4242600 3638700 3432400 4 4 1 4 4 4 4 4 4 4 4 593370 1095500 2688.3 1311400 429350 364170 303320 798510 776340 681000 747830 552460 1023100 44145 1308500 408330 439190 328910 786440 768080 669940 722290 3 3 1 3 3 3 3 3 3 3 3 811500000 632180000 179310000 1927 1034 1804 11240;11241;11242;11243;11244;11245 13543;13544;13545;13546;13547;13548;13549;13550;13551 13548 1336 9 ATHGQTCARPMCIPPSYADLGK Acetyl (Protein N-term) 2472.1348 0.13481906 1034 P45880 VDAC2 Voltage-dependent anion-selective channel protein 2 yes yes 1 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 47.69 48.229 3 1.4493E-07 15090 20211116_3446_TMUAki_TMT10x_S_F7 61.222 51.692 3113700 5418600 23018 6230600 3572800 3402700 2955400 2251300 1969600 2136600 3419400 2899200 5059200 279900 6256600 3411200 3615000 2999600 2343700 2098300 2091400 3253700 2 2 1 2 2 2 2 2 2 2 2 1668200 2912300 0 3526000 2514200 2510700 2139400 1227300 1046000 1073800 1833300 1553200 2719800 144030 3538600 2400900 2591500 2155800 1308000 1139900 1055000 1744200 1 1 0 1 1 1 1 1 1 1 1 1445500 2506300 23018 2704500 1058600 892000 816040 1024000 923630 1062800 1586000 1346100 2339400 135880 2718000 1010300 1023500 843760 1035600 958430 1036400 1509500 1 1 1 1 1 1 1 1 1 1 1 1204800000 617200000 587630000 1928 1034 1804 11246;11247 13552;13553 13553 2 ATHIKLPR Unmodified 934.57123 0.57123467 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 1 By MS/MS 2 0 1 1 30.439 30.209 3 0.032535 7646 20211116_3429_TMUAki_TMT10x_P_F2 56.432 42.924 350570 579780 3701.3 524410 641360 782800 495870 489030 528370 412970 518460 326440 540790 36587 542760 611530 774920 511600 509760 535750 406460 500450 1 1 1 1 1 1 1 1 1 1 1 350570 579780 3701.3 524410 641360 782800 495870 489030 528370 412970 518460 326440 540790 36587 542760 611530 774920 511600 509760 535750 406460 500450 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10810000 10810000 0 1929 629 1805 11248 13554 13554 1 ATIAGGGVIPHIHK Unmodified 1369.783 0.78301836 591 Q71UI9;P0C0S5;Q71UI9-3;Q71UI9-4 H2AFV;H2AFZ Histone H2A.V;Histone H2A.Z yes no 0 0 0 0 By MS/MS By MS/MS 3.86 3 4 4 1 1 4 7 7 41.409 41.402 3;4 5.4225E-08 10498 20211116_3428_TMUAki_TMT10x_P_F1 121.28 98.805 20722000 31749000 281550 35577000 41398000 36885000 24198000 28005000 29459000 24918000 30152000 19296000 29639000 2152700 36043000 39272000 37295000 25607000 28829000 29764000 24463000 29065000 17 17 10 17 17 17 17 17 17 17 17 13074000 19478000 231860 22114000 34439000 30012000 16942000 17747000 18727000 15608000 18931000 12175000 18184000 1544900 22491000 32593000 29812000 18155000 18599000 18980000 15331000 18256000 8 8 5 8 8 8 8 8 8 8 8 7648100 12271000 49689 13463000 6959000 6872400 7255400 10258000 10732000 9310300 11221000 7121000 11455000 607800 13552000 6679000 7483700 7451600 10230000 10784000 9132000 10810000 9 9 5 9 9 9 9 9 9 9 9 23724000000 17680000000 6043700000 1930 591 1806 11249;11250;11251;11252;11253;11254;11255;11256;11257;11258;11259;11260;11261;11262 13555;13556;13557;13558;13559;13560;13561;13562;13563;13564;13565;13566;13567;13568;13569;13570;13571;13572 13556 18 ATIFEINASSR Unmodified 1207.6197 0.619701 2279 Q8TDD1;Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 yes no 0 0 0 0 By MS/MS 6 0 1 1 52.537 52.656 2 0.0030804 14898 20211116_3445_TMUAki_TMT10x_S_F6 76.655 47.568 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1931 2279 1807 11263 13573 13573 1 ATIFNLK Unmodified 805.46979 0.46978929 2723 Q9BY44;Q9BY44-3;Q9BY44-4;Q9BY44-2 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 58.926 58.684 2 0.0063481 19144 20211116_3429_TMUAki_TMT10x_P_F2 103.92 46.815 6685800 10562000 18000 11597000 11316000 11811000 7897300 8943100 8989000 8195200 9716400 6225300 9859300 631540 11761000 10766000 11955000 8223200 9215100 9122800 8034700 9350600 2 2 1 2 2 2 2 2 2 2 2 3845400 5806900 0 6431300 8507500 9196500 5350500 5047100 5212600 4556900 5537100 3580400 5420800 379710 6558200 8077700 9104900 5588000 5326300 5320400 4470700 5331400 1 1 0 1 1 1 1 1 1 1 1 2840400 4755000 18000 5165900 2808900 2614900 2546900 3896000 3776400 3638300 4179300 2644900 4438500 251830 5202900 2687800 2850000 2635200 3888800 3802300 3563900 4019200 1 1 1 1 1 1 1 1 1 1 1 491390000 319460000 171930000 1932 2723 1808 11264;11265 13574;13575 13574 2 ATIGADFLTK Unmodified 1035.5601 0.56006086 1151 P51149 RAB7A Ras-related protein Rab-7a yes yes 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 60.883 61.167 2 7.2732E-09 19813 20211116_3435_TMUAki_TMT10x_P_F7 177.06 133.82 57336000 90647000 626040 101000000 78800000 89449000 62202000 63903000 62482000 58953000 76536000 53390000 84622000 5623600 102130000 75176000 91263000 63971000 66114000 64051000 57781000 73396000 6 6 5 6 6 6 6 6 6 6 6 33406000 52419000 385640 57480000 54241000 67907000 40685000 36349000 35370000 34677000 43263000 31107000 48931000 3420800 58438000 51692000 67827000 41812000 38500000 36495000 33936000 41490000 4 4 4 4 4 4 4 4 4 4 4 23930000 38228000 240400 43519000 24558000 21542000 21517000 27554000 27112000 24276000 33273000 22283000 35691000 2202800 43694000 23485000 23436000 22158000 27614000 27556000 23845000 31907000 2 2 1 2 2 2 2 2 2 2 2 4210100000 2426400000 1783700000 1933 1151 1809 11266;11267;11268;11269;11270;11271 13576;13577;13578;13579;13580;13581;13582 13578 7 ATILCTSYVQFK Unmodified 1429.7275 0.72753689 927 P35244 RPA3 Replication protein A 14 kDa subunit yes yes 0 0 0 0 By MS/MS 2.67 0.471 1 2 3 67.089 66.779 3 5.3558E-15 23027 20211116_3430_TMUAki_TMT10x_P_F3 146.16 108.69 5566600 8146400 0 8847900 6067700 9526300 5731300 6370600 4377000 4048600 6588100 5182700 7604000 424050 8986900 5806700 9592000 5789200 6566900 4590600 4049700 6286800 1 1 0 1 1 1 1 1 1 1 1 5566600 8146400 0 8847900 6067700 9526300 5731300 6370600 4377000 4048600 6588100 5182700 7604000 424050 8986900 5806700 9592000 5789200 6566900 4590600 4049700 6286800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 436490000 436490000 0 1934 927 1810 11272;11273;11274 13583;13584;13585 13585 3 ATIRPWSTFVDQQR Unmodified 1703.8744 0.87435256 3129 Q9UI14 RABAC1 Prenylated Rab acceptor protein 1 yes yes 0 0 0 1 By MS/MS 3 0 1 1 52.592 52.441 3 6.5722E-07 17047 20211116_3430_TMUAki_TMT10x_P_F3 101.39 81.808 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1935 3129 1811 11275 13586 13586 1 ATISNDGATILK Unmodified 1202.6507 0.65066678 2609 Q99832;Q99832-3 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 48.695 48.863 2;3 4.5637E-08 13063 20211116_3444_TMUAki_TMT10x_S_F5 114.93 90.143 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1936 2609 1812 11276;11277 13587;13588 13587 2 ATISNPITGDLETVHYR Unmodified 1885.9534 0.95339074 655 P13674 P4HA1 Prolyl 4-hydroxylase subunit alpha-1 yes yes 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 54.063 54.168 3 0.0068924 15543 20211116_3445_TMUAki_TMT10x_S_F6 53.779 36.84 4399200 7372500 113970 8758400 4325100 4525300 4266600 5324800 5675900 5302600 5881900 4096900 6884500 469900 8773800 4152500 4889200 4374500 5372800 5719900 5179700 5667700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4399200 7372500 113970 8758400 4325100 4525300 4266600 5324800 5675900 5302600 5881900 4096900 6884500 469900 8773800 4152500 4889200 4374500 5372800 5719900 5179700 5667700 1 1 1 1 1 1 1 1 1 1 1 242970000 0 242970000 1937 655 1813 11278;11279 13589;13590 13590 2 ATLECHPLTMTDPIEEHR Oxidation (M) 2164.9881 0.98813804 2596 Q99661;Q99661-2 KIF2C Kinesin-like protein KIF2C yes no 0 0 1 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 37.304 37.141 4 2.5457E-12 11887 20211116_3441_TMUAki_TMT10x_S_F3 133.71 116.64 1126300 1814500 29977 2091400 3231900 3135700 1819800 2220900 2498900 1801200 1975300 1048900 1694100 150810 2129600 3065200 3109500 1940700 2291700 2493900 1776500 1921700 3 3 3 3 3 3 3 3 3 3 3 881150 1356600 5109.3 1629900 3030200 2913400 1612100 1863800 2110500 1453900 1594600 820480 1266900 107910 1662600 2870100 2865200 1724800 1935700 2106900 1436800 1554300 2 2 2 2 2 2 2 2 2 2 2 245170 457810 24868 461500 201730 222350 207720 357100 388450 347370 380680 228460 427200 42894 466970 195090 244300 215980 355990 387000 339660 367470 1 1 1 1 1 1 1 1 1 1 1 197320000 108370000 88956000 1938 2596 1814 11280;11281;11282 13591;13592;13593 13593 2830 3 ATLENITNLRPVGEDFR Unmodified 1944.0065 0.0064889465 2990 Q9NWV4 C1orf123 UPF0587 protein C1orf123 yes yes 0 0 0 1 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 60.714 61 3 1.0091E-10 17959 20211116_3434_TMUAki_TMT10x_P_F6 123.63 101.31 24960000 41470000 204790 42504000 30996000 40092000 27901000 28543000 26900000 30705000 30830000 23241000 38700000 2311400 43252000 29653000 40732000 28432000 29668000 27549000 29899000 29619000 5 5 3 5 5 5 5 5 5 5 5 14176000 22832000 201530 24374000 20443000 30940000 16918000 16715000 15050000 18037000 17575000 13201000 21311000 1429700 24855000 19524000 30795000 17287000 17752000 15482000 17562000 16876000 3 3 2 3 3 3 3 3 3 3 3 10784000 18638000 3258.5 18130000 10553000 9151700 10983000 11828000 11850000 12667000 13255000 10041000 17390000 881690 18397000 10129000 9937100 11145000 11916000 12067000 12337000 12743000 2 2 1 2 2 2 2 2 2 2 2 3834800000 1978900000 1855900000 1939 2990 1815 11283;11284;11285;11286;11287 13594;13595;13596;13597 13594 4 ATLEVILRPK Unmodified 1138.7074 0.7073938 2908 Q9NQT4 EXOSC5 Exosome complex component RRP46 yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 54.347 54.032 3 3.7561E-09 17192 20211116_3429_TMUAki_TMT10x_P_F2 141.95 101.95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1940 2908 1816 11288;11289 13598;13599 13598 2 ATLKDQLIYNLLK Acetyl (Protein N-term) 1573.9079 0.9079441 462 P00338;P00338-4;P00338-2;P00338-5 LDHA L-lactate dehydrogenase A chain yes no 1 0 0 1 By MS/MS By MS/MS 2.43 1.92 2 4 1 4 3 80.686 80.678 2;3 6.4063E-44 26722 20211116_3440_TMUAki_TMT10x_S_F2 100.48 36.661 70873000 142680000 537100 74776000 107580000 144800000 102420000 84341000 83830000 87867000 98216000 65990000 132880000 6395600 82127000 103020000 141840000 103590000 88909000 86606000 85671000 94300000 6 6 4 6 6 6 6 6 6 6 6 44768000 90074000 436410 47714000 59664000 105390000 63781000 52258000 51365000 51390000 59692000 41685000 83890000 4123000 52530000 57326000 102610000 64096000 55788000 53094000 50226000 57325000 3 3 2 3 3 3 3 3 3 3 3 26105000 52607000 100690 27062000 47914000 39414000 38641000 32083000 32464000 36478000 38524000 24304000 48993000 2272600 29596000 45696000 39226000 39489000 33121000 33512000 35445000 36975000 3 3 2 3 3 3 3 3 3 3 3 15145000000 7894600000 7249900000 1941 462 1817 11290;11291;11292;11293;11294;11295;11296 13600;13601;13602;13603;13604;13605 13604 6 ATLKDQLIYNLLKEEQTPQNK Acetyl (Protein N-term) 2528.3486 0.34861811 462 P00338;P00338-4;P00338-2;P00338-5 LDHA L-lactate dehydrogenase A chain yes no 1 0 0 2 By MS/MS By MS/MS 6.75 1.96 1 1 1 3 6 9 3 64.33 64.352 3;4 2.11E-56 27622 20211116_3446_TMUAki_TMT10x_S_F7 117.74 104.15 55294000 125890000 414660 44942000 132840000 194800000 115280000 172220000 127480000 151430000 125120000 51485000 117170000 4296900 53806000 126940000 188700000 118230000 175620000 129070000 148750000 120770000 16 16 9 16 16 16 16 16 16 16 16 33815000 76457000 41423 27417000 57000000 138520000 79692000 98396000 73065000 89093000 72002000 31484000 71159000 1473900 33095000 55215000 133360000 79443000 101790000 74584000 87397000 69491000 13 13 7 13 13 13 13 13 13 13 13 21479000 49434000 373230 17525000 75841000 56281000 35586000 73825000 54411000 62338000 53117000 20001000 46008000 2823000 20711000 71726000 55339000 38784000 73831000 54484000 61356000 51280000 3 3 2 3 3 3 3 3 3 3 3 25275000000 14027000000 11247000000 1942 462 1818 11297;11298;11299;11300;11301;11302;11303;11304;11305;11306;11307;11308 13606;13607;13608;13609;13610;13611;13612;13613;13614;13615;13616;13617;13618;13619;13620;13621 13620 16 ATLPSPDKLPGFK Unmodified 1369.7606 0.76055158 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 58.072 57.877 3 4.4973E-09 17167 20211116_3428_TMUAki_TMT10x_P_F1 125.61 108.73 64697000 103630000 443010 113330000 123410000 154010000 87072000 102020000 105350000 91617000 91998000 60241000 96733000 6402200 115540000 117430000 153210000 90786000 106040000 105900000 89907000 89161000 7 7 5 7 7 7 7 7 7 7 7 53438000 83332000 258200 92034000 112060000 143010000 77806000 81493000 85644000 73145000 74684000 49756000 77791000 5295200 94037000 106590000 141160000 80956000 85711000 86397000 71781000 72384000 5 5 3 5 5 5 5 5 5 5 5 11259000 20297000 184820 21293000 11348000 10996000 9266000 20529000 19702000 18472000 17314000 10485000 18943000 1107000 21498000 10840000 12052000 9830900 20330000 19502000 18126000 16776000 2 2 2 2 2 2 2 2 2 2 2 8541500000 4855000000 3686400000 1943 769 1819 11309;11310;11311;11312 13622;13623;13624;13625;13626;13627;13628 13624 7 ATLSAEVYR Unmodified 1008.524 0.52400971 2832 Q9H8H0;Q9H8H0-2 NOL11 Nucleolar protein 11 yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 37.251 37.389 2 0.0022732 9652 20211116_3442_TMUAki_TMT10x_S_F4 87.308 67.83 227020 403530 4467.5 422490 245600 182360 219550 224910 236600 195770 300590 211410 376610 23245 426080 235110 201550 224590 225650 242220 192400 287990 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 227020 403530 4467.5 422490 245600 182360 219550 224910 236600 195770 300590 211410 376610 23245 426080 235110 201550 224590 225650 242220 192400 287990 1 1 1 1 1 1 1 1 1 1 1 18678000 0 18678000 1944 2832 1820 11313;11314 13629;13630 13630 2 ATLVESSTSGFTPGGGGSSVSMIASR Oxidation (M) 2458.1646 0.16458209 1091 P49321;P49321-3;P49321-4;P49321-2 NASP Nuclear autoantigenic sperm protein yes no 0 0 1 0 By MS/MS By MS/MS 7.12 0.781 2 3 3 3 5 56.732 57.022 2;3 2.2539E-26 16452 20211116_3447_TMUAki_TMT10x_S_F8 149.35 133.8 16218000 29471000 91230 29169000 20991000 27263000 17586000 26435000 24508000 24976000 23460000 15099000 27498000 848650 29750000 20030000 27873000 18231000 26876000 24593000 24453000 22664000 9 9 2 9 9 9 9 9 9 9 9 7168500 12817000 79675 11486000 9134200 16906000 8647000 11068000 10977000 10614000 9787500 6673700 11955000 515060 11893000 8739100 16758000 8868600 11534000 11023000 10385000 9478500 4 4 1 4 4 4 4 4 4 4 4 9049400 16654000 11556 17683000 11857000 10357000 8939400 15368000 13531000 14361000 13673000 8425300 15544000 333600 17857000 11291000 11115000 9362300 15342000 13570000 14067000 13185000 5 5 1 5 5 5 5 5 5 5 5 27911000000 8945800000 18965000000 1945 1091 1821 11315;11316;11317;11318;11319;11320;11321;11322 13631;13632;13633;13634;13635;13636;13637;13638;13639;13640 13640 1416 10 ATLVESSTSGFTPGGGGSSVSMIASR Unmodified 2442.1697 0.16966746 1091 P49321;P49321-3;P49321-4;P49321-2 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 0 By MS/MS By MS/MS 6.62 2.23 1 1 2 4 4 4 62.406 62.57 2;3 3.5878E-116 18648 20211116_3447_TMUAki_TMT10x_S_F8 316.97 297.39 11111000 20841000 72363 19940000 14231000 15917000 14246000 10923000 10482000 11608000 14788000 10345000 19443000 837790 20345000 13647000 16351000 14333000 11379000 10982000 11309000 14132000 10 10 4 10 10 10 10 10 10 10 10 4634800 8241600 5615.5 7426400 6156000 9703400 6264800 3322700 3494100 4663400 5286000 4315200 7687200 295720 7667800 5903800 9601400 6263200 3740500 3739500 4499300 5043700 4 4 1 4 4 4 4 4 4 4 4 6476000 12599000 66748 12513000 8074900 6213200 7981100 7600600 6988400 6944800 9501600 6030100 11756000 542070 12677000 7742700 6749400 8069700 7638100 7242100 6809700 9088000 6 6 3 6 6 6 6 6 6 6 6 12791000000 6631300000 6159800000 1946 1091 1821 11323;11324;11325;11326;11327;11328;11329;11330 13641;13642;13643;13644;13645;13646;13647;13648;13649 13649 9 ATLWYVPLSLK Unmodified 1289.7384 0.73835958 64 O00154-4;O00154;O00154-6;O00154-7;O00154-5;O00154-2;O00154-3 ACOT7 Cytosolic acyl coenzyme A thioester hydrolase yes no 0 0 0 0 By MS/MS By matching 5.25 0.433 3 1 3 1 79.047 79.054 2;3 3.7309E-05 26574 20211116_3433_TMUAki_TMT10x_P_F5 102.06 63.823 6154700 10306000 141520 8929800 8509100 11687000 8573100 4715000 3914900 5456900 7743100 5731700 9611700 675130 9248300 8169100 11579000 8548600 5168000 4322400 5299000 7351000 2 2 2 2 2 2 2 2 2 2 2 6154700 10306000 141520 8929800 8509100 11687000 8573100 4715000 3914900 5456900 7743100 5731700 9611700 675130 9248300 8169100 11579000 8548600 5168000 4322400 5299000 7351000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1498400000 1085600000 412800000 1947 64 1822 11331;11332;11333;11334 13650;13651 13650 2 ATLYVTAIEDR Unmodified 1250.6507 0.65066678 2612 Q99873;Q99873-2;Q99873-3 PRMT1 Protein arginine N-methyltransferase 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 1.15 3 2 2 2 4 5 55.208 55.143 2 7.2076E-15 18152 20211116_3430_TMUAki_TMT10x_P_F3 196.07 157.98 60819000 100700000 424980 104800000 74170000 89207000 66629000 76738000 74368000 72392000 81243000 56629000 93975000 5340300 106390000 70936000 91560000 68219000 78521000 75562000 70880000 78160000 12 12 7 12 12 12 12 12 12 12 12 27518000 44367000 202780 46369000 41872000 58393000 33847000 33038000 32561000 31513000 35180000 25623000 41406000 2591700 47342000 39954000 58175000 34712000 34824000 33275000 30840000 33856000 5 5 3 5 5 5 5 5 5 5 5 33300000 56329000 222200 58429000 32299000 30814000 32783000 43700000 41806000 40878000 46064000 31006000 52569000 2748600 59046000 30982000 33384000 33507000 43696000 42287000 40040000 44304000 7 7 4 7 7 7 7 7 7 7 7 8702100000 4887000000 3815100000 1948 2612 1823 11335;11336;11337;11338;11339;11340;11341;11342;11343 13652;13653;13654;13655;13656;13657;13658;13659;13660;13661;13662;13663;13664 13653 13 ATMKDDLADYGGYDGGYVQDYEDFM 2 Oxidation (M) 2870.1211 0.12112187 360 O75822;O75822-2;O75822-3 EIF3J Eukaryotic translation initiation factor 3 subunit J yes no 0 0 2 1 By MS/MS 1.5 0.5 1 1 2 73.688 73.596 3 0.0075712 23661 20211116_3428_TMUAki_TMT10x_P_F1 49.765 38.897 2869900 4889800 0 4298900 2939800 6270300 3278800 3839600 4145200 4101200 3481000 2672000 4560500 214760 4456800 2825800 6211500 3334900 4034300 4155500 3994700 3378500 2 2 0 2 2 2 2 2 2 2 2 2869900 4889800 0 4298900 2939800 6270300 3278800 3839600 4145200 4101200 3481000 2672000 4560500 214760 4456800 2825800 6211500 3334900 4034300 4155500 3994700 3378500 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1908100000 1908100000 0 1949 360 1824 11344;11345 13665;13666 13665 279;280 2 ATMNLALAGDILAAGQDAHCQLLR Oxidation (M) 2538.2683 0.26827607 2872 Q9HCU5 PREB Prolactin regulatory element-binding protein yes yes 0 0 1 0 By MS/MS 8 0 1 1 74.225 74.091 3 2.0235E-08 23448 20211116_3447_TMUAki_TMT10x_S_F8 99.943 87.14 1373200 2265300 8392.5 2222000 2360800 1829500 1909100 1615800 1486300 1555500 1875400 1278700 2113600 135500 2264000 2252800 1883200 1947000 1651800 1544300 1521600 1797100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1373200 2265300 8392.5 2222000 2360800 1829500 1909100 1615800 1486300 1555500 1875400 1278700 2113600 135500 2264000 2252800 1883200 1947000 1651800 1544300 1521600 1797100 1 1 1 1 1 1 1 1 1 1 1 554010000 0 554010000 1950 2872 1825 11346 13667 13667 2996 1 ATNDEIFSILK Unmodified 1249.6554 0.65541781 1554 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.6 0.49 2 3 3 2 73.565 73.568 2;3 1.9639E-12 24269 20211116_3433_TMUAki_TMT10x_P_F5 144.65 100.2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1951 1554 1826 11347;11348;11349;11350;11351 13668;13669;13670;13671;13672 13669 5 ATNESEDEIPQLVPIGK Unmodified 1838.9262 0.92617294 377 O76021;O76021-2 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.8 0.748 2 2 1 2 3 66.729 66.437 3 1.4765E-05 21567 20211116_3442_TMUAki_TMT10x_S_F4 89.484 77.569 40012000 66344000 575940 69333000 47583000 58704000 42702000 48900000 48197000 47006000 52926000 37259000 61917000 3831600 70361000 45528000 60239000 43740000 50156000 48959000 45987000 50909000 8 8 6 8 8 8 8 8 8 8 8 17370000 26902000 213150 28156000 22396000 36665000 21831000 21242000 21869000 20146000 22056000 16174000 25107000 1580700 28762000 21465000 36480000 22175000 22343000 22253000 19720000 21271000 3 3 1 3 3 3 3 3 3 3 3 22643000 39441000 362790 41177000 25187000 22040000 20871000 27658000 26328000 26861000 30870000 21085000 36810000 2251000 41599000 24064000 23759000 21565000 27813000 26707000 26266000 29639000 5 5 5 5 5 5 5 5 5 5 5 2993000000 1378500000 1614500000 1952 377 1827 11352;11353;11354;11355;11356 13673;13674;13675;13676;13677;13678;13679;13680 13679 8 ATNFLAHEK Acetyl (Protein N-term) 1071.5349 0.53490874 855 P29692;P29692-3;P29692-4 EEF1D Elongation factor 1-delta yes no 1 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 45.323 45.268 2 3.5582E-06 15179 20211116_3441_TMUAki_TMT10x_S_F3 93.649 53.546 13750000 21059000 144020 27053000 27446000 24091000 14867000 20863000 23259000 17256000 22028000 12803000 19672000 1454300 27131000 26008000 24652000 15998000 21267000 23251000 17002000 21288000 6 6 5 6 6 6 6 6 6 6 6 7314200 10837000 92865 13590000 22589000 19554000 10344000 10778000 11853000 9018100 11378000 6810800 10123000 895240 13759000 21356000 19355000 11180000 11349000 11976000 8880100 10991000 3 3 2 3 3 3 3 3 3 3 3 6435300 10221000 51158 13463000 4856800 4536600 4522500 10084000 11406000 8237700 10650000 5992300 9549600 559100 13372000 4651600 5296900 4818000 9917800 11276000 8121500 10297000 3 3 3 3 3 3 3 3 3 3 3 4305100000 2640200000 1664800000 1953 855 1828 11357;11358;11359;11360;11361;11362 13681;13682;13683;13684;13685;13686 13685 6 ATNIEQIFR Acetyl (Protein N-term) 1132.5877 0.58767259 719 P18583;P18583-3;P18583-5;P18583-6;P18583-10;P18583-4;P18583-7;P18583-9;P18583-2;P18583-8 SON Protein SON yes no 1 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 73.499 73.303 2 3.5134E-06 26593 20211116_3441_TMUAki_TMT10x_S_F3 124.08 100.22 664000 1201200 0 1019300 979600 750470 860640 770110 658060 709350 906650 618220 1120100 55788 1048700 936060 781550 872930 780180 687150 695290 866920 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 664000 1201200 0 1019300 979600 750470 860640 770110 658060 709350 906650 618220 1120100 55788 1048700 936060 781550 872930 780180 687150 695290 866920 1 1 0 1 1 1 1 1 1 1 1 503160000 234710000 268450000 1954 719 1829 11363;11364;11365;11366 13687;13688 13688 2 ATNIEVLSNTFQFTNEAR Unmodified 2054.0069 0.006882877 346 O75534;O75534-2;O75534-3;O75534-4 CSDE1 Cold shock domain-containing protein E1 yes no 0 0 0 0 By MS/MS By MS/MS 6.36 0.643 1 5 5 5 6 72.691 72.774 2;3 3.5621E-79 25246 20211116_3446_TMUAki_TMT10x_S_F7 299.66 259.78 34788000 58286000 351730 54866000 41128000 49250000 39352000 29475000 25257000 30679000 41545000 32391000 54374000 3073200 56130000 39397000 50075000 39573000 31002000 26889000 29913000 39572000 11 11 5 11 11 11 11 11 11 11 11 20186000 32939000 204650 31528000 20731000 33596000 21985000 16816000 14183000 17114000 22026000 18795000 30730000 1668200 32294000 19909000 33720000 21993000 17953000 15049000 16702000 21004000 6 6 2 6 6 6 6 6 6 6 6 14602000 25347000 147070 23338000 20397000 15654000 17368000 12659000 11073000 13565000 19519000 13596000 23644000 1405000 23836000 19488000 16354000 17580000 13049000 11840000 13211000 18568000 5 5 3 5 5 5 5 5 5 5 5 5258400000 2270400000 2988100000 1955 346 1830 11367;11368;11369;11370;11371;11372;11373;11374;11375;11376;11377 13689;13690;13691;13692;13693;13694;13695;13696;13697;13698;13699;13700;13701;13702;13703 13702 15 ATNVCTRFEDSPSYVK Unmodified 1872.8676 0.8676122 260 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 42.824 42.934 3 5.7511E-16 10885 20211116_3445_TMUAki_TMT10x_S_F6 158.98 133.02 1592000 2368800 10933 3461100 2818000 2767300 1582700 2874900 2748800 1992800 2430000 1482400 2214400 159350 3443400 2671600 2864300 1706100 2891200 2734100 1982600 2354000 2 2 2 2 2 2 2 2 2 2 2 837600 1181000 9943.3 1684100 2156300 2367100 1199300 1523200 1401100 1039200 1231300 779960 1103900 97178 1692700 2044100 2350300 1272800 1576800 1410500 1034900 1193000 1 1 1 1 1 1 1 1 1 1 1 754410 1187800 990.04 1777100 661700 400190 383370 1351700 1347600 953560 1198700 702440 1110500 62170 1750700 627530 514000 433270 1314400 1323500 947700 1160900 1 1 1 1 1 1 1 1 1 1 1 373610000 182960000 190640000 1956 260 1831 11378;11379 13704;13705 13705 2 ATPEQYQILK Unmodified 1189.6343 0.63428844 667 P14324;P14324-2 FDPS Farnesyl pyrophosphate synthase yes no 0 0 0 0 By MS/MS By MS/MS 5.6 0.49 2 3 3 2 49.739 49.839 2;3 1.9108E-09 13810 20211116_3445_TMUAki_TMT10x_S_F6 161.63 110.29 1819300 2811200 68343 3911200 6763200 5609200 2911500 3210600 3614000 2487800 3071000 1694500 2627200 283770 3937700 6392200 5555600 3176400 3363700 3626600 2459500 2979300 1 1 1 1 1 1 1 1 1 1 1 1819300 2811200 68343 3911200 6763200 5609200 2911500 3210600 3614000 2487800 3071000 1694500 2627200 283770 3937700 6392200 5555600 3176400 3363700 3626600 2459500 2979300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 439660000 439660000 0 1957 667 1832 11380;11381;11382;11383;11384 13706;13707;13708;13709;13710 13710 5 ATPLSSTVTLSMSADVPLVVEYK Oxidation (M) 2423.2505 0.25054355 635 P12004 PCNA Proliferating cell nuclear antigen yes yes 0 0 1 0 By MS/MS By MS/MS 6.89 0.875 1 1 5 2 7 2 80.294 80.322 2;3;4 8.8794E-46 27365 20211116_3446_TMUAki_TMT10x_S_F7 213.67 188.82 35535000 60965000 136380 51751000 36852000 62557000 40870000 41549000 39177000 41623000 46366000 33086000 56852000 2439700 53607000 35428000 62590000 41194000 43307000 40185000 40648000 44505000 16 16 6 16 16 16 16 16 16 16 16 25290000 42655000 66645 37323000 22358000 47400000 27732000 27755000 26071000 28516000 32131000 23546000 39781000 1564700 38603000 21566000 47225000 27798000 29233000 26810000 27819000 30808000 13 13 5 13 13 13 13 13 13 13 13 10246000 18311000 69734 14428000 14495000 15156000 13138000 13794000 13107000 13107000 14235000 9539700 17071000 874970 15004000 13862000 15365000 13396000 14073000 13375000 12829000 13697000 3 3 1 3 3 3 3 3 3 3 3 12254000000 7321700000 4932100000 1958 635 1833 11385;11386;11387;11388;11389;11390;11391;11392;11393 13711;13712;13713;13714;13715;13716;13717;13718;13719;13720;13721;13722;13723;13724;13725;13726 13724 663 16 ATPMPSRPSTTPFIDK Unmodified 1744.8818 0.8818057 833 P27816;P27816-6;P27816-2;P27816-5;P27816-4 MAP4 Microtubule-associated protein 4 yes no 0 0 0 1 By MS/MS 1 0 1 1 47.28 47.28 3 0.06371 12919 20211116_3428_TMUAki_TMT10x_P_F1 40.844 19.213 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1959 833 1834 11394 13727 13727 1 ATPMPSRPSTTPFIDK Oxidation (M) 1760.8767 0.87672033 833 P27816;P27816-6;P27816-2;P27816-5;P27816-4 MAP4 Microtubule-associated protein 4 yes no 0 0 1 1 By MS/MS By MS/MS 8 0 2 1 1 41.788 41.928 3 0.00067486 10805 20211116_3436_TMUAki_TMT10x_P_F8 70.748 52.152 2491700 3740300 26777 5484400 4604100 4837300 2592900 2964600 4005100 2992700 3459900 2320200 3496600 255480 5462100 4365300 4925800 2779000 3109600 3993400 2921700 3354500 3 3 2 3 3 3 3 3 3 3 3 1678500 2537500 26499 3689300 4220500 4375100 2185000 2002400 2581800 1981500 2301200 1563000 2372000 193820 3692600 3996900 4361500 2335000 2155100 2599200 1936100 2228600 2 2 1 2 2 2 2 2 2 2 2 813180 1202800 278.26 1795100 383540 462170 407960 962190 1423300 1011200 1158700 757150 1124600 61660 1769500 368390 564280 443970 954520 1394100 985580 1125900 1 1 1 1 1 1 1 1 1 1 1 227560000 145920000 81640000 1960 833 1834 11395;11396 13728;13729;13730 13728 1005 3 ATQALVLAPTR Unmodified 1139.6663 0.66625727 1277 P60842;P60842-2 EIF4A1 Eukaryotic initiation factor 4A-I yes no 0 0 0 0 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 44.299 44.457 2 1.6549E-07 13795 20211116_3439_TMUAki_TMT10x_S_F1 140.48 99.035 9598100 14989000 128920 17808000 14216000 15363000 9128100 10783000 12163000 10263000 12713000 8937200 13997000 914370 17931000 13507000 15699000 9619000 11179000 12260000 10045000 12247000 6 6 4 6 6 6 6 6 6 6 6 5280000 7763700 35684 9380400 11077000 11805000 5651900 5713900 6439500 5517700 6838100 4916000 7250400 485990 9491600 10482000 11739000 6041000 6111000 6530800 5397000 6584100 3 3 1 3 3 3 3 3 3 3 3 4318000 7225300 93240 8427200 3139200 3558900 3476200 5069400 5723000 4745300 5874800 4021200 6746500 428380 8439400 3024200 3959800 3578000 5068300 5729200 4647800 5662500 3 3 3 3 3 3 3 3 3 3 3 1192000000 845910000 346100000 1961 1277 1835 11397;11398;11399;11400;11401;11402 13731;13732;13733;13734;13735;13736 13734 6 ATQELIPIEDFITPLK Unmodified 1827.003 0.002966698 2899 Q9NQ50 MRPL40 39S ribosomal protein L40, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 80.477 80.497 3 8.3332E-06 26322 20211116_3445_TMUAki_TMT10x_S_F6 98.062 79.698 2351500 4045200 88289 3638300 3077000 2376100 2962300 890730 954330 971970 2353200 2190200 3773100 287400 3721500 2952800 2465000 2948600 983020 1108400 945930 2226800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2351500 4045200 88289 3638300 3077000 2376100 2962300 890730 954330 971970 2353200 2190200 3773100 287400 3721500 2952800 2465000 2948600 983020 1108400 945930 2226800 1 1 1 1 1 1 1 1 1 1 1 821850000 0 821850000 1962 2899 1836 11403;11404;11405 13737;13738 13738 2 ATQQQHDFTLTQTADGR Unmodified 1916.8977 0.89766678 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 3.38 1.32 1 1 2 2 2 4 4 33.332 33.294 3 1.7348E-60 7888 20211116_3431_TMUAki_TMT10x_P_F4 281.02 259.16 931970 1391800 2545.9 1919600 2720300 2078900 1201600 1355500 1740000 1082300 1617100 867770 1300700 96986 1923400 2570200 2091800 1314900 1406500 1742300 1068300 1563700 7 7 2 7 7 7 7 7 7 7 7 648340 966890 2545.9 1327300 2507200 1877600 967100 955030 1220600 754690 1150200 603690 903550 80427 1336800 2365400 1858100 1069300 1011600 1228100 745320 1111700 4 4 2 4 4 4 4 4 4 4 4 283630 424950 0 592340 213090 201280 234520 400450 519460 327610 466890 264080 397150 16559 586620 204810 233650 245590 394920 514130 322960 452010 3 3 0 3 3 3 3 3 3 3 3 523660000 413890000 109780000 1963 1433 1837 11406;11407;11408;11409;11410;11411;11412;11413 13739;13740;13741;13742;13743;13744;13745;13746 13742 8 ATRDELPYTFAAPESYEELR Unmodified 2357.1176 0.11755554 1424 P78316;P78316-2 NOP14 Nucleolar protein 14 yes no 0 0 0 1 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 61.764 61.637 3 6.9112E-25 21881 20211116_3441_TMUAki_TMT10x_S_F3 175.85 155.2 34129000 57770000 1859700 61305000 39462000 49514000 38134000 50485000 52579000 47030000 49319000 31791000 53919000 4618700 62115000 37916000 51191000 39197000 51178000 52743000 46075000 47677000 8 8 7 8 8 8 8 8 8 8 8 10856000 17796000 746470 18995000 14944000 26073000 15301000 15262000 15434000 14256000 14816000 10113000 16610000 1653000 19400000 14383000 25882000 15505000 16033000 15674000 13965000 14312000 3 3 3 3 3 3 3 3 3 3 3 23274000 39974000 1113200 42310000 24519000 23441000 22833000 35224000 37145000 32774000 34503000 21678000 37309000 2965700 42716000 23534000 25309000 23692000 35145000 37069000 32110000 33366000 5 5 4 5 5 5 5 5 5 5 5 3032800000 1478400000 1554400000 1964 1424 1838 11414;11415;11416;11417;11418 13747;13748;13749;13750;13751;13752;13753;13754 13750 8 ATSFLLALEPELEAR Unmodified 1658.8879 0.88793694 494 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.8 0.98 1 3 3 3 4 6 79.755 79.723 2;3 5.2258E-24 26356 20211116_3440_TMUAki_TMT10x_S_F2 194.8 162.39 36796000 60745000 483860 57415000 45539000 49547000 47169000 34690000 34305000 36497000 45874000 34263000 56669000 2799300 58690000 43720000 50627000 47362000 36074000 35872000 35570000 43895000 11 11 6 11 11 11 11 11 11 11 11 10723000 18542000 162790 17318000 10039000 19881000 12237000 11366000 10457000 11808000 14136000 9984900 17297000 917340 17792000 9683800 19904000 12242000 11999000 10847000 11514000 13523000 3 3 2 3 3 3 3 3 3 3 3 26073000 42203000 321070 40097000 35499000 29666000 34933000 23323000 23847000 24689000 31738000 24278000 39372000 1881900 40899000 34037000 30723000 35120000 24075000 25026000 24056000 30372000 8 8 4 8 8 8 8 8 8 8 8 8287700000 1809400000 6478300000 1965 494 1839 11419;11420;11421;11422;11423;11424;11425;11426;11427;11428 13755;13756;13757;13758;13759;13760;13761;13762;13763;13764;13765;13766;13767 13760 13 ATSHVGEIEQELALAR Unmodified 1722.8901 0.89006221 876 P30622;P30622-2;P30622-1 CLIP1 CAP-Gly domain-containing linker protein 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 53.22 52.846 3 4.0506E-07 18297 20211116_3441_TMUAki_TMT10x_S_F3 103.77 86.745 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1966 876 1840 11429 13768 13768 1 ATSLGRPEEEEDELAHR Unmodified 1937.9079 0.90789711 952 P36551;P36551-2 CPOX Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 33.433 33.439 4 5.0129E-11 7335 20211116_3428_TMUAki_TMT10x_P_F1 133.78 116.7 495000 845820 19524 1011700 1017800 848740 590280 658280 697010 527180 769670 461040 789860 66557 1017900 966330 870410 624400 674980 707000 520270 740220 2 2 2 2 2 2 2 2 2 2 2 233560 390700 8694 475120 801410 640900 390610 331500 312340 256310 378780 217530 364880 35419 481220 758630 635730 415270 350410 323530 253420 363340 1 1 1 1 1 1 1 1 1 1 1 261440 455130 10830 536560 216370 207840 199670 326780 384680 270880 390890 243510 424990 31137 536710 207710 234680 209130 324570 383470 266850 376890 1 1 1 1 1 1 1 1 1 1 1 57641000 36124000 21517000 1967 952 1841 11430;11431 13769;13770 13769 2 ATSNVFAMFDQSQIQEFK Oxidation (M) 2105.9728 0.97280556 145 O14950;P19105;P24844;P24844-2 MYL12B;MYL12A;MYL9 Myosin regulatory light chain 12B;Myosin regulatory light chain 12A;Myosin regulatory light polypeptide 9 yes no 0 0 1 0 By MS/MS By MS/MS 6.29 1.03 2 2 2 1 3 4 76.037 76.058 3 5.3032E-12 26565 20211116_3446_TMUAki_TMT10x_S_F7 124.18 114.12 30299000 49766000 147820 48095000 32186000 44113000 35702000 31584000 32482000 34553000 36125000 28211000 46431000 2533400 49123000 30950000 44904000 35930000 32833000 33315000 33624000 34736000 10 10 5 10 10 10 10 10 10 10 10 12833000 19675000 8175.9 19576000 11571000 23283000 13349000 13472000 13456000 14206000 15042000 11948000 18359000 951440 20033000 11133000 23270000 13451000 14214000 13740000 13844000 14461000 4 4 1 4 4 4 4 4 4 4 4 17465000 30090000 139640 28519000 20616000 20830000 22353000 18112000 19026000 20346000 21083000 16263000 28072000 1582000 29090000 19817000 21633000 22480000 18619000 19575000 19779000 20274000 6 6 4 6 6 6 6 6 6 6 6 4545800000 2139000000 2406700000 1968 145 1842 11432;11433;11434;11435;11436;11437;11438 13771;13772;13773;13774;13775;13776;13777;13778;13779;13780 13778 102 10 ATSNVFAMFDQSQIQEFK Unmodified 2089.9779 0.97789093 145 O14950;P19105;P24844;P24844-2 MYL12B;MYL12A;MYL9 Myosin regulatory light chain 12B;Myosin regulatory light chain 12A;Myosin regulatory light polypeptide 9 yes no 0 0 0 0 By matching By MS/MS 8 0 2 1 1 79.182 79.17 3 0.056571 25369 20211116_3447_TMUAki_TMT10x_S_F8 34.009 17.886 4587200 7661800 106800 7930200 4880600 3374100 5811000 2393900 2185000 2939800 4626000 4272000 7150300 483960 8003000 4709600 3696300 5733500 2499700 2468100 2848700 4386900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4587200 7661800 106800 7930200 4880600 3374100 5811000 2393900 2185000 2939800 4626000 4272000 7150300 483960 8003000 4709600 3696300 5733500 2499700 2468100 2848700 4386900 1 1 1 1 1 1 1 1 1 1 1 1277100000 490620000 786440000 1969 145 1842 11439;11440 13781 13781 1 ATSPADALQYLLQFAR Unmodified 1763.9206 0.92063405 2490 Q96HW7;Q96HW7-2 INTS4 Integrator complex subunit 4 yes no 0 0 0 0 By MS/MS By MS/MS 4 0.632 1 3 1 3 2 82.207 82.199 2;3 2.2837E-42 27599 20211116_3431_TMUAki_TMT10x_P_F4 222.99 194.26 3694500 5941000 0 5752600 3507400 5361300 4077800 2980200 2996100 3358300 4022100 3439600 5542900 262920 5876000 3374800 5432300 4073000 3161600 3131800 3264300 3848200 4 4 0 4 4 4 4 4 4 4 4 3208800 5071400 0 4977800 2850600 4817400 3274800 2570700 2586700 2881300 3462400 2987500 4731800 225550 5082400 2741600 4867100 3278300 2736400 2692700 2801200 3313000 3 3 0 3 3 3 3 3 3 3 3 485680 869630 0 774770 656840 543830 802990 409530 409380 477000 559690 452170 811100 37378 793640 633140 565250 794680 425180 439040 463080 535260 1 1 0 1 1 1 1 1 1 1 1 741110000 461130000 279980000 1970 2490 1843 11441;11442;11443;11444;11445 13782;13783;13784;13785 13784 4 ATSTATSGFAGAIGQK Unmodified 1466.7365 0.73652168 1161 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 47.605 47.8 3 2.7089E-30 13190 20211116_3436_TMUAki_TMT10x_P_F8 174.95 153.99 1169200 2170700 0 2470700 1113100 1054800 986410 2018600 2109800 1611800 1905100 1088700 2026600 95535 2478200 1064100 1183600 1042000 1991600 2090000 1591000 1844100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1169200 2170700 0 2470700 1113100 1054800 986410 2018600 2109800 1611800 1905100 1088700 2026600 95535 2478200 1064100 1183600 1042000 1991600 2090000 1591000 1844100 1 1 0 1 1 1 1 1 1 1 1 247650000 0 247650000 1971 1161 1844 11446;11447;11448 13786;13787 13786 2 ATTATMATSGSAR Acetyl (Protein N-term);Oxidation (M) 1282.5823 0.58232922 973 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 1 0 1 0 By MS/MS 2 0 1 1 27.47 27.233 2 2.9692E-09 6462 20211116_3429_TMUAki_TMT10x_P_F2 71.066 55.627 49764 83323 1475.5 83593 61786 103580 56756 42328 53243 42278 59831 46346 77750 5669.2 85559 59206 102910 57725 46126 54553 41293 57513 1 1 1 1 1 1 1 1 1 1 1 49764 83323 1475.5 83593 61786 103580 56756 42328 53243 42278 59831 46346 77750 5669.2 85559 59206 102910 57725 46126 54553 41293 57513 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5876300 5876300 0 1972 973 1845 11449 13788 13788 1241 1 ATTATMATSGSAR Acetyl (Protein N-term) 1266.5874 0.5874146 973 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 1 0 0 0 By MS/MS By MS/MS 3.33 1.25 1 1 1 1 2 32.261 32.016 2 1.8707E-25 9832 20211116_3441_TMUAki_TMT10x_S_F3 147.74 135.12 795510 1381800 4147.2 1037700 810820 792640 876190 610840 682240 570670 945410 740560 1288100 48366 1079200 777940 818520 879340 629030 711890 559010 903850 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 795510 1381800 4147.2 1037700 810820 792640 876190 610840 682240 570670 945410 740560 1288100 48366 1079200 777940 818520 879340 629030 711890 559010 903850 2 2 1 2 2 2 2 2 2 2 2 43543000 0 43543000 1973 973 1845 11450;11451;11452 13789;13790;13791;13792 13791 4 ATTGLKPVDSGCVAYVLR Unmodified 1905.9982 0.99823245 2873 Q9HD20;Q9HD20-2 ATP13A1 Manganese-transporting ATPase 13A1 yes no 0 0 0 1 By MS/MS 1 0 1 1 55.048 55.048 3 0.00070625 16080 20211116_3428_TMUAki_TMT10x_P_F1 66.874 48.278 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1974 2873 1846 11453 13793 13793 1 ATTLPTDFNYNVDTLVQLHLKPGTR Unmodified 2813.4712 0.47119286 1746 Q15003;Q15003-2 NCAPH Condensin complex subunit 2 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 73.922 73.706 4 5.2478E-31 26790 20211116_3441_TMUAki_TMT10x_S_F3 179.58 167.45 3481000 4980300 86818 5236400 3316800 4583100 3856500 3809800 3024000 4033700 4237300 3241800 4648100 367210 5314100 3199200 4691800 3857800 3919300 3155900 3930300 4050100 2 2 2 2 2 2 2 2 2 2 2 2087000 2578500 50114 3014400 1461500 3019200 2198200 2475800 1685600 2398700 2654000 1943600 2407600 210970 3044500 1422900 3063200 2175400 2542300 1771600 2345900 2530200 1 1 1 1 1 1 1 1 1 1 1 1394000 2401800 36704 2222000 1855400 1563900 1658200 1334000 1338400 1635100 1583300 1298200 2240500 156240 2269600 1776300 1628600 1682400 1376900 1384300 1584500 1519800 1 1 1 1 1 1 1 1 1 1 1 2255200000 1252400000 1002800000 1975 1746 1847 11454;11455 13794;13795 13795 2 ATTLSNAVSSLASTGLSLTK Unmodified 1921.0368 0.036786022 1637 Q13492;Q13492-4;Q13492-3;Q13492-2;Q13492-5 PICALM Phosphatidylinositol-binding clathrin assembly protein yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 79.02 79.009 3 1.6402E-18 26696 20211116_3442_TMUAki_TMT10x_S_F4 153.06 129.5 9846300 16160000 16686 15294000 9968100 13287000 11670000 8483300 7654600 8230000 12010000 9167900 15076000 827060 15634000 9601200 13552000 11624000 8860100 8117500 8048300 11451000 2 2 1 2 2 2 2 2 2 2 2 6137900 9473600 16686 9123200 5297000 9213700 6784700 5025300 4228500 4827000 7215400 5715100 8838600 512650 9333300 5117400 9286600 6725100 5314800 4519700 4722500 6868000 1 1 1 1 1 1 1 1 1 1 1 3708300 6686700 0 6170900 4671100 4073400 4885600 3458100 3426100 3403000 4794300 3452800 6237500 314410 6300400 4483800 4265300 4899300 3545300 3597900 3325800 4582500 1 1 0 1 1 1 1 1 1 1 1 2727400000 1477300000 1250000000 1976 1637 1848 11456;11457;11458;11459 13796;13797;13798;13799 13798 4 ATTPADGEEPAPEAEALAAAR Unmodified 2036.9651 0.96507764 2547 Q96S44 TP53RK TP53-regulating kinase yes yes 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 49.857 49.727 3 5.2674E-15 13918 20211116_3428_TMUAki_TMT10x_P_F1 139.81 127.15 1470200 2526000 50018 2843100 2039400 2670100 1880500 2418400 2337900 2094100 2241300 1369300 2358200 176470 2875400 1954500 2725100 1929900 2461900 2355000 2058600 2165100 2 2 2 2 2 2 2 2 2 2 2 786950 1259700 5064.7 1424000 1406600 1985500 1262500 1158900 1296600 1154300 1172900 732760 1176000 78642 1449500 1345400 1969500 1289200 1219800 1313200 1127500 1135300 1 1 1 1 1 1 1 1 1 1 1 683230 1266300 44953 1419100 632780 684560 617990 1259500 1041300 939870 1068400 636490 1182200 97833 1425900 609090 755610 640740 1242000 1041800 931090 1029800 1 1 1 1 1 1 1 1 1 1 1 795090000 464860000 330230000 1977 2547 1849 11460;11461;11462 13800;13801 13800 2 ATTPVIMVGPGTGVAPFIGFIQER Oxidation (M) 2473.3039 0.30391652 696 P16435 POR NADPH--cytochrome P450 reductase yes yes 0 0 1 0 By MS/MS 2 0 1 1 79.628 79.611 3 1.1275E-05 27572 20211116_3429_TMUAki_TMT10x_P_F2 68.97 59.279 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1978 696 1850 11463 13802 13802 778 1 ATTPVIMVGPGTGVAPFIGFIQER Unmodified 2457.309 0.3090019 696 P16435 POR NADPH--cytochrome P450 reductase yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 3 2 1 80.475 80.425 3 2.5758E-29 29406 20211116_3441_TMUAki_TMT10x_S_F3 166.49 147.55 2631900 4091900 30539 4361500 2883300 3223000 3325500 1521900 1529600 1759500 2858600 2450700 3819200 241180 4413400 2777000 3315300 3294500 1640300 1681800 1708600 2716400 2 2 1 2 2 2 2 2 2 2 2 1553500 2297400 30539 2417300 1369200 2111900 1570300 838830 873880 1044700 1576400 1446700 2144100 154680 2453000 1319800 2141700 1560700 923280 944420 1011900 1498900 1 1 1 1 1 1 1 1 1 1 1 1078400 1794600 0 1944200 1514100 1111100 1755200 683040 655690 714710 1282200 1004000 1675100 86497 1960400 1457200 1173700 1733700 717020 737390 696710 1217500 1 1 0 1 1 1 1 1 1 1 1 1191100000 404820000 786330000 1979 696 1850 11464;11465;11466 13803;13804;13805 13805 3 ATTVIQDEDYMLQVYGK Unmodified 1972.9452 0.94519382 2699 Q9BVV6;Q9BVV6-2;Q9BVV6-4;Q9BVV6-3 KIAA0586 Protein TALPID3 yes no 0 0 0 0 By MS/MS 2 0 1 1 83.259 83.26 2 0.00080168 29062 20211116_3429_TMUAki_TMT10x_P_F2 69.979 54.223 263800 388550 1000.4 373600 232380 493420 244840 290400 348150 356290 331190 245630 362500 22363 383980 223190 490710 250900 307480 349060 345260 320010 1 1 1 1 1 1 1 1 1 1 1 263800 388550 1000.4 373600 232380 493420 244840 290400 348150 356290 331190 245630 362500 22363 383980 223190 490710 250900 307480 349060 345260 320010 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29863000 29863000 0 1980 2699 1851 11467 13806 13806 1 ATTVPDFQETRPR Unmodified 1516.7634 0.76340513 2922 Q9NR46 SH3GLB2 Endophilin-B2 yes yes 0 0 0 1 By MS/MS By MS/MS 4.75 0.433 1 3 3 1 35.591 35.645 3 1.2916E-12 9026 20211116_3433_TMUAki_TMT10x_P_F5 132.99 108.13 402560 675370 11211 864660 405510 300950 368080 651710 741070 492600 753130 374910 630900 43865 860290 388560 349240 386870 640150 738020 487650 726150 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 402560 675370 11211 864660 405510 300950 368080 651710 741070 492600 753130 374910 630900 43865 860290 388560 349240 386870 640150 738020 487650 726150 1 1 1 1 1 1 1 1 1 1 1 223300000 188250000 35055000 1981 2922 1852 11468;11469;11470;11471 13807;13808 13807 2 ATVAAFAASEGHSHPR Unmodified 1607.7805 0.78045218 2955 Q9NUP9;O14910 LIN7C;LIN7A Protein lin-7 homolog C;Protein lin-7 homolog A yes no 0 0 0 0 By MS/MS 5 0 1 1 32.323 32.263 4 0.00068982 7591 20211116_3433_TMUAki_TMT10x_P_F5 66.738 56.95 455200 740660 6838.6 739320 814220 867490 531370 404700 449250 400560 625230 423890 691110 49141 756240 774020 865430 551240 434700 466870 391380 597690 1 1 1 1 1 1 1 1 1 1 1 455200 740660 6838.6 739320 814220 867490 531370 404700 449250 400560 625230 423890 691110 49141 756240 774020 865430 551240 434700 466870 391380 597690 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 54228000 54228000 0 1982 2955 1853 11472 13809 13809 1 ATVAPEDVSEVIFGHVLAAGCGQNPVR Unmodified 2792.3916 0.39156233 2706 Q9BWD1;Q9BWD1-2 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes no 0 0 0 0 By MS/MS By MS/MS 6.4 2.73 1 1 3 4 1 78.067 78.052 3;4 2.023E-64 24984 20211116_3447_TMUAki_TMT10x_S_F8 234.23 226.42 20932000 35625000 152440 30333000 27344000 32422000 24465000 22335000 20152000 23549000 26438000 19488000 33222000 1642500 31350000 26135000 32673000 24833000 23254000 20913000 22949000 25309000 5 5 2 5 5 5 5 5 5 5 5 11080000 19187000 98081 14729000 9038000 21094000 12259000 11789000 10705000 12294000 12994000 10315000 17887000 661080 15436000 8732200 20888000 12219000 12471000 11040000 11986000 12464000 3 3 1 3 3 3 3 3 3 3 3 9851800 16437000 54359 15604000 18306000 11327000 12205000 10546000 9446700 11255000 13444000 9173400 15335000 981440 15913000 17403000 11786000 12614000 10783000 9873000 10963000 12845000 2 2 1 2 2 2 2 2 2 2 2 7066000000 1849300000 5216800000 1983 2706 1854 11473;11474;11475;11476;11477 13810;13811;13812;13813;13814;13815;13816 13815 7 ATVEDEK Unmodified 790.37086 0.37086311 615 P11142 HSPA8 Heat shock cognate 71 kDa protein yes yes 0 0 0 0 By MS/MS 2 0 1 1 30.969 30.742 2 0.068736 7832 20211116_3429_TMUAki_TMT10x_P_F2 63.565 25.92 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1984 615 1855 11478 13817 13817 1 ATVEPETTPTPNPPTTEEEKTESNQEVANPEHYIK Acetyl (Protein N-term) 3948.8389 0.83888066 519 P06730;P06730-2 EIF4E Eukaryotic translation initiation factor 4E yes no 1 0 0 1 By MS/MS By MS/MS 2 0.894 2 1 2 2 3 56.031 55.806 4 5.7871E-11 16679 20211116_3440_TMUAki_TMT10x_S_F2 80.841 75.325 2940600 5828300 39988 5754900 3341100 4429600 2778200 3459700 3595700 3817000 3924100 2738200 5438200 269640 5856300 3190800 4572600 2872800 3577300 3633900 3713200 3775300 4 4 2 4 4 4 4 4 4 4 4 1193800 2278400 39988 2154700 1991800 3054800 1805800 1552400 1530800 1605700 1622800 1111800 2125600 147410 2220400 1907600 3022700 1832900 1655800 1572600 1566000 1562600 2 2 2 2 2 2 2 2 2 2 2 1746900 3549900 0 3600200 1349300 1374900 972400 1907400 2064900 2211400 2301300 1626400 3312600 122230 3635900 1283200 1549800 1039900 1921500 2061300 2147200 2212700 2 2 0 2 2 2 2 2 2 2 2 3256300000 1797700000 1458500000 1985 519 1856 11479;11480;11481;11482;11483 13818;13819;13820;13821 13821 4 ATVLTTER Unmodified 889.4869 0.48689592 3182 Q9UMS4 PRPF19 Pre-mRNA-processing factor 19 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 32.692 32.585 2 0.0013201 10037 20211116_3441_TMUAki_TMT10x_S_F3 124.08 90.267 1531900 2689600 25233 2504700 3031600 3042000 2002700 1793900 2040200 1712000 2294000 1426600 2509000 170060 2576300 2882400 3037800 2086400 1884400 2082900 1675400 2205100 2 2 1 2 2 2 2 2 2 2 2 1138000 1964500 25233 1915500 2528000 2645800 1488000 1389100 1552400 1283800 1687200 1059800 1832900 137330 1968500 2399400 2622100 1565700 1472700 1581300 1258200 1623400 1 1 1 1 1 1 1 1 1 1 1 393950 725110 0 589180 503570 396170 514710 404740 487740 428260 606780 366800 676100 32729 607770 483030 415690 520670 411780 501600 417290 581660 1 1 0 1 1 1 1 1 1 1 1 67491000 47064000 20427000 1986 3182 1857 11484;11485 13822;13823 13823 2 ATVMDVKPVDYR Oxidation (M) 1408.7021 0.70205043 828 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 0 0 1 1 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 38.113 38.212 3 0.03277 8757 20211116_3444_TMUAki_TMT10x_S_F5 51.211 31.115 2515000 4102600 32863 4843000 5205700 4621900 3170000 3046100 3856400 2833100 3671800 2341900 3830900 273030 4885100 4942000 4686800 3343100 3170200 3886700 2775800 3547800 3 3 2 3 3 3 3 3 3 3 3 1438300 2230500 24091 2684700 4189300 3611800 1961200 1856500 2293000 1682500 2063700 1339300 2083000 180220 2720600 3962400 3582800 2116100 1971000 2310000 1650400 1997900 1 1 1 1 1 1 1 1 1 1 1 1076700 1872100 8771.7 2158300 1016400 1010100 1208700 1189600 1563500 1150600 1608100 1002600 1747900 92811 2164400 979660 1103900 1227000 1199300 1576600 1125400 1549900 2 2 1 2 2 2 2 2 2 2 2 387000000 207090000 179910000 1987 828 1858 11486;11487;11488 13824;13825;13826 13825 999 3 ATVMDVKPVDYR Unmodified 1392.7071 0.7071358 828 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 45.759 45.879 3 0.00099694 11773 20211116_3434_TMUAki_TMT10x_P_F6 78.814 73.66 6385800 9868400 117960 13696000 10982000 8859800 6830700 6394400 6164700 5669900 8834300 5946700 9222600 703730 13629000 10433000 9268600 7125100 6604100 6395300 5567400 8439500 2 2 2 2 2 2 2 2 2 2 2 2957700 4456400 3725.2 5856300 8211400 6482000 3937900 3365700 3048400 2800100 4111000 2754000 4163600 322270 5884900 7766300 6494800 4190300 3562300 3177900 2758000 3932800 1 1 1 1 1 1 1 1 1 1 1 3428000 5412000 114240 7839400 2770500 2377800 2892800 3028800 3116200 2869800 4723300 3192700 5059000 381460 7744400 2666500 2773800 2934800 3041800 3217500 2809400 4506700 1 1 1 1 1 1 1 1 1 1 1 394240000 283300000 110940000 1988 828 1858 11489;11490 13827;13828 13827 2 ATVNTFGYIAK Unmodified 1183.6237 0.62372375 345 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 0 0 By MS/MS 1 0 1 1 55.613 55.613 2 7.0771E-06 16337 20211116_3428_TMUAki_TMT10x_P_F1 119.27 96.13 2595700 4019900 17922 4644200 5589000 6161000 4201100 3174800 3282900 2706100 3395600 2417000 3753300 273830 4716500 5325200 6115800 4305500 3364600 3384000 2662200 3272100 1 1 1 1 1 1 1 1 1 1 1 2595700 4019900 17922 4644200 5589000 6161000 4201100 3174800 3282900 2706100 3395600 2417000 3753300 273830 4716500 5325200 6115800 4305500 3364600 3384000 2662200 3272100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 268220000 268220000 0 1989 345 1859 11491 13829 13829 1 ATVTATTKVPEIR Acetyl (Protein N-term) 1427.7984 0.79839365 3221 Q9Y230 RUVBL2 RuvB-like 2 yes yes 1 0 0 1 By MS/MS 5 0 1 1 46.556 46.72 2 2.6049E-25 12223 20211116_3444_TMUAki_TMT10x_S_F5 99.864 79.027 1082800 1819100 0 1749300 1254200 1070900 859220 1913400 2056400 1687300 1719900 1007900 1697200 64220 1779300 1190900 1151700 929260 1896100 2027700 1657200 1669600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1082800 1819100 0 1749300 1254200 1070900 859220 1913400 2056400 1687300 1719900 1007900 1697200 64220 1779300 1190900 1151700 929260 1896100 2027700 1657200 1669600 1 1 0 1 1 1 1 1 1 1 1 203790000 0 203790000 1990 3221 1860 11492 13830 13830 1 ATYLEFIQQNEERDGVR Acetyl (Protein N-term) 2109.0127 0.012696536 1809 Q15437 SEC23B Protein transport protein Sec23B yes yes 1 0 0 1 By matching By MS/MS 1 0 2 1 1 74.656 74.61 2 1.4083E-07 26047 20211116_3439_TMUAki_TMT10x_S_F1 63.164 37.69 1322500 2362400 2653.2 2170700 1948500 1611200 1732600 1342600 1320800 1475700 1630600 1231400 2203600 120880 2219700 1863100 1669900 1756000 1382600 1372700 1435800 1563400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1322500 2362400 2653.2 2170700 1948500 1611200 1732600 1342600 1320800 1475700 1630600 1231400 2203600 120880 2219700 1863100 1669900 1756000 1382600 1372700 1435800 1563400 1 1 1 1 1 1 1 1 1 1 1 991200000 520960000 470240000 1991 1809 1861 11493;11494 13831 13831 1 AVAAAAAAAVTPAAIAAATTTLAQEEPVAAPEPK Unmodified 3113.6608 0.66084412 2165 Q8IYB3;Q8IYB3-2 SRRM1 Serine/arginine repetitive matrix protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.9 2.07 1 1 2 6 6 4 80.089 80.092 3;4;5 1.8458E-23 25852 20211116_3447_TMUAki_TMT10x_S_F8 131.2 114.53 23163000 35142000 257520 35886000 25676000 26402000 28979000 15791000 15167000 19915000 25016000 21565000 32794000 1755100 36415000 24689000 27243000 28794000 16714000 16383000 19280000 23827000 9 9 4 9 9 9 9 9 9 9 9 9895000 13884000 992.92 14407000 7882400 12770000 10785000 5773600 5858300 7692300 10168000 9211300 12957000 549870 14636000 7615300 12953000 10635000 6280800 6328300 7433600 9674900 3 3 1 3 3 3 3 3 3 3 3 13268000 21258000 256530 21478000 17793000 13632000 18194000 10018000 9308300 12222000 14848000 12354000 19837000 1205300 21778000 17074000 14290000 18159000 10434000 10055000 11846000 14152000 6 6 3 6 6 6 6 6 6 6 6 11270000000 7157100000 4112700000 1992 2165 1862 11495;11496;11497;11498;11499;11500;11501;11502;11503;11504 13832;13833;13834;13835;13836;13837;13838;13839;13840 13839 9 AVAALLTIPEAEK Unmodified 1324.7602 0.76021723 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 6 0.775 3 4 3 4 6 72.66 72.742 2;3 1.7466E-09 25189 20211116_3446_TMUAki_TMT10x_S_F7 137.89 114.22 72678000 115950000 240700 125480000 75590000 103370000 75765000 69455000 78741000 75858000 85402000 67668000 108230000 5871900 127010000 72471000 105910000 76934000 72521000 80211000 73823000 82178000 14 14 6 14 14 14 14 14 14 14 14 38220000 58924000 18476 61805000 40996000 71785000 39018000 37687000 42921000 41189000 44313000 35585000 54993000 2921500 62997000 39240000 71748000 39801000 40143000 43543000 40083000 42704000 6 6 2 6 6 6 6 6 6 6 6 34457000 57030000 222220 63677000 34594000 31582000 36747000 31769000 35820000 34669000 41089000 32084000 53240000 2950400 64012000 33231000 34158000 37133000 32378000 36668000 33740000 39474000 8 8 4 8 8 8 8 8 8 8 8 5170400000 2494400000 2675900000 1993 2116 1863 11505;11506;11507;11508;11509;11510;11511;11512;11513;11514 13841;13842;13843;13844;13845;13846;13847;13848;13849;13850;13851;13852;13853;13854;13855;13856;13857 13854 17 AVADLALIPDVDIDSDGVFK Acetyl (Protein N-term) 2114.0783 0.078316486 2936 Q9NRX4;Q9NRX4-2 PHPT1 14 kDa phosphohistidine phosphatase yes no 1 0 0 0 By MS/MS By MS/MS 2.5 1.3 4 4 2 3 1 6 8 84.051 84.046 2;3 7.174E-42 29383 20211116_3429_TMUAki_TMT10x_P_F2 148.96 129.83 18991000 30141000 47922 29580000 22760000 28816000 24358000 18565000 19604000 19799000 24383000 17681000 28123000 988020 30204000 21851000 29172000 24476000 19430000 20321000 19286000 23374000 12 12 4 12 12 12 12 12 12 12 12 10905000 16577000 39201 15689000 10429000 19301000 12628000 10679000 11431000 10639000 13997000 10153000 15465000 444050 16122000 10055000 19246000 12657000 11292000 11772000 10392000 13423000 5 5 3 5 5 5 5 5 5 5 5 8086700 13565000 8720.5 13890000 12330000 9514600 11729000 7886000 8173100 9160200 10386000 7528000 12658000 543970 14082000 11796000 9926200 11819000 8138300 8548900 8893800 9950600 7 7 1 7 7 7 7 7 7 7 7 2767800000 1623200000 1144600000 1994 2936 1864 11515;11516;11517;11518;11519;11520;11521;11522;11523;11524;11525;11526;11527;11528 13858;13859;13860;13861;13862;13863;13864;13865;13866;13867;13868;13869;13870;13871 13861 14 AVAEQIPLLVQGVR Unmodified 1491.8773 0.87731267 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 68.924 68.9 2 1.0768E-18 21862 20211116_3436_TMUAki_TMT10x_P_F8 167.11 131.23 17913000 28926000 243700 28848000 20591000 29989000 20381000 19663000 19882000 22080000 24349000 16680000 26991000 1722500 29452000 19751000 30248000 20669000 20585000 20407000 21465000 23351000 3 3 2 3 3 3 3 3 3 3 3 12133000 18719000 243700 19256000 13632000 23491000 14370000 12463000 12756000 14411000 16078000 11298000 17469000 1254000 19670000 13104000 23422000 14488000 13286000 13166000 13994000 15407000 2 2 2 2 2 2 2 2 2 2 2 5780300 10206000 0 9591200 6958600 6497700 6011300 7200200 7126100 7669000 8271100 5381800 9521400 468490 9781800 6646600 6826000 6181600 7299200 7241400 7470600 7943400 1 1 0 1 1 1 1 1 1 1 1 1033500000 517430000 516030000 1995 3293 1865 11529;11530 13872;13873;13874 13873 3 AVAFQNPQTHVIENLHAAAYR Unmodified 2349.1978 0.19781197 774 P22695 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5 3.29 2 1 2 3 2 48.787 48.861 4 1.6558E-68 13493 20211116_3428_TMUAki_TMT10x_P_F1 255.24 239.12 22279000 37798000 407150 40111000 34553000 38194000 25712000 27838000 26723000 26497000 29286000 20746000 35278000 2148400 40728000 32928000 38795000 26574000 28787000 27233000 25934000 28172000 8 8 4 8 8 8 8 8 8 8 8 14339000 25512000 155500 26210000 26806000 30534000 19333000 17115000 16842000 17212000 18454000 13352000 23808000 1312700 26754000 25522000 30538000 19924000 18082000 17300000 16806000 17752000 4 4 1 4 4 4 4 4 4 4 4 7940600 12286000 251650 13901000 7747000 7659900 6379100 10723000 9881300 9284800 10832000 7394900 11470000 835760 13974000 7405500 8257200 6650500 10705000 9933000 9127300 10420000 4 4 3 4 4 4 4 4 4 4 4 9358700000 4852100000 4506600000 1996 774 1866 11531;11532;11533;11534;11535 13875;13876;13877;13878;13879;13880;13881 13875 7 AVAGDASESALLK Unmodified 1230.6456 0.6455814 497 P05023;P05023-3;P05023-4;P05023-2 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes no 0 0 0 0 By MS/MS 4 0 1 1 48.702 48.856 2 6.77E-28 14334 20211116_3442_TMUAki_TMT10x_S_F4 208.46 139.56 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1997 497 1867 11536 13882 13882 1 AVAHHTDCTFIR Unmodified 1426.6776 0.67756701 1337 P62195;P62195-2 PSMC5 26S protease regulatory subunit 8 yes no 0 0 0 0 By MS/MS 4.67 0.471 1 2 3 29.136 29.104 3;4 3.5114E-05 6347 20211116_3433_TMUAki_TMT10x_P_F5 99.439 82.414 466660 747290 6427.9 695670 718310 919600 525970 466930 485220 464060 602290 434560 697110 48205 716690 684300 912840 542310 497500 499560 453340 577390 3 3 3 3 3 3 3 3 3 3 3 466660 747290 6427.9 695670 718310 919600 525970 466930 485220 464060 602290 434560 697110 48205 716690 684300 912840 542310 497500 499560 453340 577390 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17902000 17902000 0 1998 1337 1868 11537;11538;11539 13883;13884;13885 13883 3 AVALYFIDK Unmodified 1038.575 0.57498264 624 P11387;Q969P6;Q969P6-2 TOP1;TOP1MT DNA topoisomerase 1;DNA topoisomerase I, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 2 1 72.872 72.714 2 1.372E-05 23400 20211116_3436_TMUAki_TMT10x_P_F8 152.59 101.99 3581400 6462900 0 5363300 4857200 4107900 3878600 5996400 5119200 4919100 5542200 3334400 6026500 294710 5530400 4631400 4304700 4023800 5969100 5168600 4848700 5333200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3581400 6462900 0 5363300 4857200 4107900 3878600 5996400 5119200 4919100 5542200 3334400 6026500 294710 5530400 4631400 4304700 4023800 5969100 5168600 4848700 5333200 1 1 0 1 1 1 1 1 1 1 1 337660000 0 337660000 1999 624 1869 11540;11541;11542 13886;13887;13888 13887 3 AVANETGAFFFLINGPEIMSK Oxidation (M) 2271.1246 0.12455517 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 1 0 By MS/MS By MS/MS 6.36 2.57 2 4 5 6 5 80.266 80.274 2;3;4 6.9727E-14 26525 20211116_3436_TMUAki_TMT10x_P_F8 136.92 120.78 39415000 71958000 426820 51794000 46508000 76713000 57426000 63204000 75418000 71020000 60040000 36701000 67069000 2156200 54635000 44886000 76310000 58235000 65177000 75392000 69040000 58395000 16 16 9 16 16 16 16 16 16 16 16 17507000 32468000 203430 23225000 16890000 42310000 22127000 27452000 35240000 32600000 27442000 16302000 30261000 924210 24632000 16332000 41592000 22576000 28815000 35000000 31626000 26714000 8 8 4 8 8 8 8 8 8 8 8 21908000 39490000 223390 28568000 29618000 34403000 35299000 35752000 40178000 38421000 32598000 20400000 36808000 1232000 30003000 28554000 34718000 35659000 36362000 40392000 37414000 31681000 8 8 5 8 8 8 8 8 8 8 8 17928000000 10072000000 7856200000 2000 1235 1870 11543;11544;11545;11546;11547;11548;11549;11550;11551;11552;11553 13889;13890;13891;13892;13893;13894;13895;13896;13897;13898;13899;13900;13901;13902;13903;13904 13896 1667 16 AVANETGAFFFLINGPEIMSK Unmodified 2255.1296 0.12964055 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 2.62 2 2 2 3 3 81.419 81.423 3 3.1032E-14 26988 20211116_3436_TMUAki_TMT10x_P_F8 133.92 117.23 18007000 29175000 182330 26914000 19847000 23583000 23350000 12086000 11664000 14858000 20443000 16767000 27215000 1625800 27567000 19125000 23972000 23140000 12952000 12689000 14397000 19449000 7 7 5 7 7 7 7 7 7 7 7 9879500 15828000 71094 14496000 9803400 15724000 11540000 6676900 6589000 8186200 11201000 9198900 14764000 829470 14901000 9444300 15740000 11461000 7290400 7083500 7932900 10663000 4 4 3 4 4 4 4 4 4 4 4 8127400 13347000 111240 12418000 10044000 7858500 11810000 5409600 5075400 6671500 9242000 7568200 12451000 796310 12666000 9681100 8231900 11679000 5661400 5605900 6463800 8786500 3 3 2 3 3 3 3 3 3 3 3 1852900000 958160000 894710000 2001 1235 1870 11554;11555;11556;11557;11558;11559 13905;13906;13907;13908;13909;13910;13911 13907 7 AVANQTSATFLR Unmodified 1277.6728 0.67279921 1336 P62191;P62191-2 PSMC1 26S protease regulatory subunit 4 yes no 0 0 0 0 By MS/MS By MS/MS 5 3.29 2 1 2 2 3 41.632 41.787 2 2.3172E-38 10173 20211116_3447_TMUAki_TMT10x_S_F8 279.62 238.32 3413300 5228700 6190.2 6445400 7799300 6221500 3834600 4787400 5783800 3744400 5109300 3177800 4883500 306040 6486100 7376200 6319600 4157300 4908700 5774800 3699900 4949700 5 5 3 5 5 5 5 5 5 5 5 1868200 2730200 1503.7 3394200 6362100 5136400 2615100 2440900 3092700 1949300 2684900 1739300 2550100 191430 3441800 6004400 5064600 2863400 2603000 3111000 1924000 2602700 2 2 1 2 2 2 2 2 2 2 2 1545100 2498500 4686.4 3051300 1437200 1085100 1219500 2346500 2691100 1795100 2424400 1438500 2333400 114610 3044300 1371800 1255000 1293900 2305600 2663800 1775900 2347000 3 3 2 3 3 3 3 3 3 3 3 553850000 314560000 239290000 2002 1336 1871 11560;11561;11562;11563;11564 13912;13913;13914;13915;13916 13916 5 AVAQALEVIPR Unmodified 1165.6819 0.68190733 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 By MS/MS By MS/MS 6.08 1.07 1 3 4 4 1 5 8 59.447 59.774 2;3 1.9739E-14 17822 20211116_3445_TMUAki_TMT10x_S_F6 147.74 117.94 125160000 207620000 2339700 222740000 171970000 192030000 135750000 202100000 170540000 174230000 181620000 116550000 193790000 12435000 225700000 164070000 197750000 140670000 204140000 172310000 171310000 174860000 14 14 12 14 14 14 14 14 13 14 14 50312000 81737000 229310 85868000 77427000 112210000 64657000 63981000 60789000 59949000 68293000 46841000 76285000 3987100 87701000 73883000 111600000 66133000 67365000 62278000 58715000 65648000 5 5 3 5 5 5 5 5 5 5 5 74847000 125880000 2110400 136870000 94544000 79820000 71096000 138120000 109760000 114280000 113320000 69706000 117500000 8448000 138000000 90192000 86144000 74539000 136770000 110040000 112590000 109210000 9 9 9 9 9 9 9 9 8 9 9 20529000000 10345000000 10184000000 2003 1094 1872 11565;11566;11567;11568;11569;11570;11571;11572;11573;11574;11575;11576;11577 13917;13918;13919;13920;13921;13922;13923;13924;13925;13926;13927;13928;13929;13930;13931;13932;13933;13934;13935 13928 19 AVASAAAALVLK Unmodified 1083.6652 0.66519463 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 68.526 68.143 2 6.955E-18 21764 20211116_3440_TMUAki_TMT10x_S_F2 188.04 125.58 6380400 11108000 33645 10339000 8117400 7349300 7143500 9252800 8878700 9026900 9569100 5941000 10362000 584660 10557000 7760900 7714200 7350600 9304800 8981100 8825500 9209600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6380400 11108000 33645 10339000 8117400 7349300 7143500 9252800 8878700 9026900 9569100 5941000 10362000 584660 10557000 7760900 7714200 7350600 9304800 8981100 8825500 9209600 2 2 2 2 2 2 2 2 2 2 2 507400000 140340000 367050000 2004 3293 1873 11578;11579;11580;11581 13936;13937;13938;13939 13937 4 AVASCSEEAVQVLLK Unmodified 1602.8287 0.8287075 160 O15084;O15084-1;O15084-4 ANKRD28 Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A yes no 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 2 2 69.198 69.286 3 0.0062382 22766 20211116_3442_TMUAki_TMT10x_S_F4 60.901 28.56 6954900 10603000 50786 11726000 10137000 13390000 9702700 6231800 5131900 5895200 7801400 6476000 9897800 668500 11908000 9711900 13377000 9723100 6687200 5515500 5771500 7443100 1 1 1 1 1 1 1 1 1 1 1 6954900 10603000 50786 11726000 10137000 13390000 9702700 6231800 5131900 5895200 7801400 6476000 9897800 668500 11908000 9711900 13377000 9723100 6687200 5515500 5771500 7443100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 937070000 937070000 0 2005 160 1874 11582;11583;11584;11585 13940;13941;13942;13943 13942 4 AVASDFYLR Acetyl (Protein N-term) 1082.5397 0.53965977 2405 Q96A72 MAGOHB Protein mago nashi homolog 2 yes yes 1 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 66.722 66.466 2 3.4449E-06 21016 20211116_3440_TMUAki_TMT10x_S_F2 123.69 101.07 3066700 5422600 21599 5061700 3715300 4965000 3920500 3531300 3083400 3844500 4262000 2855500 5058500 273520 5187900 3568200 5031700 3940100 3672100 3215300 3741800 4074900 4 4 2 4 4 4 4 4 4 4 4 1667500 2827000 333.92 2606800 2008600 3298900 2193000 1949000 1520900 2072900 2327100 1552600 2637100 136080 2685200 1930100 3287700 2194000 2053500 1605300 2019400 2219900 2 2 1 2 2 2 2 2 2 2 2 1399200 2595600 21265 2455000 1706700 1666100 1727500 1582300 1562500 1771500 1934900 1303000 2421400 137440 2502600 1638100 1744100 1746100 1618700 1610000 1722400 1855000 2 2 1 2 2 2 2 2 2 2 2 1869700000 1052100000 817540000 2006 2405 1875 11586;11587;11588;11589;11590;11591 13944;13945;13946;13947;13948 13947 5 AVASLSVK Unmodified 773.4647 0.46470391 641 P12270;P12270-2 TPR Nucleoprotein TPR yes no 0 0 0 0 By MS/MS 8 0 1 1 41.913 41.978 2 0.00041632 10347 20211116_3447_TMUAki_TMT10x_S_F8 143.12 65.838 981780 1686200 20064 1661300 1132900 876710 852140 1725200 1726600 1282500 1605900 914280 1573300 102210 1684800 1080400 960590 906110 1698000 1713900 1270800 1552900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 981780 1686200 20064 1661300 1132900 876710 852140 1725200 1726600 1282500 1605900 914280 1573300 102210 1684800 1080400 960590 906110 1698000 1713900 1270800 1552900 1 1 1 1 1 1 1 1 1 1 1 19568000 0 19568000 2007 641 1876 11592 13949 13949 1 AVASQLDCNFLK Unmodified 1364.6758 0.67583567 1357 P62333 PSMC6 26S protease regulatory subunit 10B yes yes 0 0 0 0 By MS/MS 7 0 1 1 59.885 60.391 2 7.8753E-05 20054 20211116_3446_TMUAki_TMT10x_S_F7 89.533 52.422 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2008 1357 1877 11593 13950 13950 1 AVATEANNSTFFSISSSDLVSK Unmodified 2274.1016 0.10157112 325 O75351 VPS4B Vacuolar protein sorting-associated protein 4B yes yes 0 0 0 0 By MS/MS 6 0 1 1 74.293 74.219 3 9.4417E-09 23770 20211116_3445_TMUAki_TMT10x_S_F6 103.31 92.676 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2009 325 1878 11594 13951 13951 1 AVAVAMAGALIGSEPGPAEELAK Acetyl (Protein N-term) 2193.1351 0.13511986 1715 Q14562 DHX8 ATP-dependent RNA helicase DHX8 yes yes 1 0 0 0 By MS/MS By MS/MS 3.57 1.29 2 1 3 1 2 5 84.008 84.005 2;3 6.8125E-37 28695 20211116_3442_TMUAki_TMT10x_S_F4 115.46 96.732 4064800 5857400 33570 6347200 4008200 5842200 4357700 2667500 3572100 4378600 4914900 3784900 5467400 364170 6433100 3853800 5911500 4377600 2923600 3716000 4205800 4699700 8 8 6 8 8 8 8 8 8 8 8 1751600 2332500 11418 2658600 1454100 3076100 1532900 1009500 1403900 1855500 2048300 1631000 2177700 149670 2695400 1396800 3061500 1546700 1156000 1456800 1777300 1956000 3 3 2 3 3 3 3 3 3 3 3 2313200 3525000 22152 3688600 2554100 2766100 2824800 1658000 2168100 2523100 2866600 2153900 3289800 214500 3737600 2457100 2849900 2830900 1767600 2259200 2428500 2743700 5 5 4 5 5 5 5 5 5 5 5 283750000 152590000 131160000 2010 1715 1879 11595;11596;11597;11598;11599;11600;11601 13952;13953;13954;13955;13956;13957;13958;13959 13956 8 AVAVDLGNR Unmodified 913.49813 0.49812931 2272 Q8TCS8 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 37.546 37.518 2 0.0018216 9275 20211116_3442_TMUAki_TMT10x_S_F4 93.143 60.303 3343400 5152300 0 6315500 4953100 4753800 3649400 2951100 3130100 2644000 4090500 3112500 4812000 232710 6337300 4712200 4898700 3753800 3082300 3241100 2594900 3916300 3 3 0 3 3 3 3 3 3 3 3 2183800 3324600 0 4119500 3960100 3904700 2702700 1898600 2041200 1667700 2604500 2032900 3105200 158050 4143200 3762400 3946000 2786800 2024700 2125500 1638200 2495000 1 1 0 1 1 1 1 1 1 1 1 1159600 1827600 0 2196000 993070 849140 946610 1052600 1088800 976340 1486100 1079600 1706800 74661 2194100 949790 952700 967020 1057600 1115600 956680 1421300 2 2 0 2 2 2 2 2 2 2 2 130730000 80038000 50693000 2011 2272 1880 11602;11603;11604 13960;13961;13962 13962 3 AVAVGRPSNEELR Acetyl (Protein N-term) 1438.7528 0.75284044 2965 Q9NVA2 SEPT11 Septin-11 yes yes 1 0 0 1 By MS/MS By MS/MS 2.57 1.4 2 2 1 1 1 3 4 32.357 32.319 2 9.5988E-30 9111 20211116_3429_TMUAki_TMT10x_P_F2 150.1 94.573 1618900 3060900 43695 3277800 1952900 1525700 1487300 2689200 2935600 2043700 2584400 1507700 2857000 165270 3302400 1863400 1688500 1577800 2656200 2910700 2022600 2503900 6 6 4 6 6 6 6 6 6 6 6 193280 328370 3698.2 334730 537340 434580 301830 262720 312790 242120 296200 179990 306430 11384 342520 509530 432700 318810 275180 317150 237310 286250 2 2 1 2 2 2 2 2 2 2 2 1425600 2732500 39997 2943100 1415500 1091100 1185400 2426500 2622800 1801600 2288200 1327700 2550500 153880 2959900 1353800 1255800 1259000 2381000 2593500 1785300 2217700 4 4 3 4 4 4 4 4 4 4 4 1936200000 1162100000 774110000 2012 2965 1881 11605;11606;11607;11608;11609;11610;11611 13963;13964;13965;13966;13967;13968;13969 13964 7 AVAVVVDPIQSVK Unmodified 1323.7762 0.77620165 95 O00487 PSMD14 26S proteasome non-ATPase regulatory subunit 14 yes yes 0 0 0 0 By MS/MS By MS/MS 6.6 0.49 2 3 1 4 62.966 63.188 2;3 1.7231E-22 21220 20211116_3446_TMUAki_TMT10x_S_F7 206.48 181.56 8225800 14287000 143290 13845000 10379000 8889500 8530000 11937000 11129000 11215000 12244000 7660100 13329000 845670 14081000 9914000 9430200 8829500 11961000 11248000 10983000 11777000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8225800 14287000 143290 13845000 10379000 8889500 8530000 11937000 11129000 11215000 12244000 7660100 13329000 845670 14081000 9914000 9430200 8829500 11961000 11248000 10983000 11777000 3 3 3 3 3 3 3 3 3 3 3 1832400000 0 1832400000 2013 95 1882 11612;11613;11614;11615;11616 13970;13971;13972;13973 13973 4 AVCMLSNTTAIAEAWAR Oxidation (M) 1879.8921 0.89205282 1417;2044;2007 P68363;P68363-2;P68366;P68366-2;Q71U36;Q71U36-2;P0DPH8;P0DPH7;P0DPH7-2;Q9NY65;Q9NY65-2;Q6PEY2 TUBA1B;TUBA4A;TUBA1A;TUBA8;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-8 chain;Tubulin alpha-3E chain no no 0 0 1 0 By MS/MS By MS/MS 5.52 2.71 7 10 1 2 7 10 21 26 32 67.276 67.325 2;3 3.6548E-36 20507 20211116_3447_TMUAki_TMT10x_S_F8 210.08 192.57 201500000 337510000 1396000 322070000 250480000 276870000 244100000 164290000 137020000 179150000 242720000 187620000 314880000 16255000 328980000 240000000 282310000 244620000 173160000 147830000 174360000 230870000 58 58 26 58 58 58 58 58 58 58 58 100780000 160830000 491750 160490000 123920000 182070000 133970000 78936000 64727000 80636000 117830000 93829000 150070000 7841200 164080000 119040000 181840000 133220000 85512000 70763000 78683000 112030000 26 26 10 26 26 26 26 26 26 26 26 100730000 176680000 904210 161580000 126560000 94796000 110130000 85351000 72289000 98515000 124890000 93789000 164810000 8413400 164900000 120960000 100480000 111400000 87650000 77064000 95673000 118850000 32 32 16 32 32 32 32 32 32 32 32 151060000000 84396000000 66659000000 2014 1417;2044;2007 1883 11617;11618;11619;11620;11621;11622;11623;11624;11625;11626;11627;11628;11629;11630;11631;11632;11633;11634;11635;11636;11637;11638;11639;11640;11641;11642;11643;11644;11645;11646;11647;11648;11649;11650;11651;11652;11653;11654;11655;11656;11657;11658;11659;11660;11661;11662;11663;11664;11665;11666;11667;11668;11669;11670;11671;11672;11673;11674 13974;13975;13976;13977;13978;13979;13980;13981;13982;13983;13984;13985;13986;13987;13988;13989;13990;13991;13992;13993;13994;13995;13996;13997;13998;13999;14000;14001;14002;14003;14004;14005;14006;14007;14008;14009;14010;14011;14012;14013;14014;14015;14016;14017;14018;14019;14020;14021;14022;14023;14024;14025;14026;14027;14028;14029;14030;14031;14032;14033;14034;14035;14036;14037;14038 14023 1908 65 AVCMLSNTTAIAEAWAR Unmodified 1863.8971 0.89713819 1417;2044;2007 P68363;P68363-2;P68366;P68366-2;Q71U36;Q71U36-2;P0DPH8;P0DPH7;P0DPH7-2;Q9NY65;Q9NY65-2;Q6PEY2 TUBA1B;TUBA4A;TUBA1A;TUBA8;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-8 chain;Tubulin alpha-3E chain no no 0 0 0 0 By MS/MS By MS/MS 2.94 1.71 9 53 41 10 1 10 56 68 65.784 65.744 2;3 2.6952E-93 25514 20211116_3440_TMUAki_TMT10x_S_F2 341.59 309.59 208420000 323770000 442050 366740000 221750000 179830000 278440000 57760000 41579000 74443000 202940000 194050000 302270000 15920000 368310000 213950000 191980000 272130000 65387000 58390000 72018000 190770000 107 107 54 107 107 107 107 107 107 107 107 130110000 195930000 262530 219430000 143070000 130360000 183760000 31731000 21171000 42713000 123200000 121140000 182910000 9835600 220860000 138130000 136080000 179240000 37568000 32273000 41263000 115690000 51 51 24 51 51 51 51 51 51 51 51 78308000 127840000 179510 147310000 78680000 49467000 94675000 26030000 20407000 31730000 79740000 72909000 119360000 6084800 147440000 75818000 55902000 92897000 27819000 26116000 30754000 75085000 56 56 30 56 56 56 56 56 56 56 56 84514000000 47690000000 36824000000 2015 1417;2044;2007 1883 11675;11676;11677;11678;11679;11680;11681;11682;11683;11684;11685;11686;11687;11688;11689;11690;11691;11692;11693;11694;11695;11696;11697;11698;11699;11700;11701;11702;11703;11704;11705;11706;11707;11708;11709;11710;11711;11712;11713;11714;11715;11716;11717;11718;11719;11720;11721;11722;11723;11724;11725;11726;11727;11728;11729;11730;11731;11732;11733;11734;11735;11736;11737;11738;11739;11740;11741;11742;11743;11744;11745;11746;11747;11748;11749;11750;11751;11752;11753;11754;11755;11756;11757;11758;11759;11760;11761;11762;11763;11764;11765;11766;11767;11768;11769;11770;11771;11772;11773;11774;11775;11776;11777;11778;11779;11780;11781;11782;11783;11784;11785;11786;11787;11788;11789;11790;11791;11792;11793;11794;11795;11796;11797;11798 14039;14040;14041;14042;14043;14044;14045;14046;14047;14048;14049;14050;14051;14052;14053;14054;14055;14056;14057;14058;14059;14060;14061;14062;14063;14064;14065;14066;14067;14068;14069;14070;14071;14072;14073;14074;14075;14076;14077;14078;14079;14080;14081;14082;14083;14084;14085;14086;14087;14088;14089;14090;14091;14092;14093;14094;14095;14096;14097;14098;14099;14100;14101;14102;14103;14104;14105;14106;14107;14108;14109;14110;14111;14112;14113;14114;14115;14116;14117;14118;14119;14120;14121;14122;14123;14124;14125;14126;14127;14128;14129;14130;14131;14132;14133;14134;14135;14136;14137;14138;14139;14140;14141;14142;14143;14144;14145;14146;14147;14148;14149;14150;14151;14152;14153;14154;14155;14156;14157;14158;14159;14160;14161;14162;14163;14164;14165;14166;14167;14168;14169;14170;14171;14172;14173;14174;14175;14176;14177;14178;14179 14107 141 AVCMLSNTTAIAEAWAR Carbamidomethyl (C) 1920.9186 0.91860192 1417;2044;2007 P68363;P68363-2;P68366;P68366-2;Q71U36;Q71U36-2;P0DPH8;P0DPH7;P0DPH7-2;Q9NY65;Q9NY65-2;Q6PEY2 TUBA1B;TUBA4A;TUBA1A;TUBA8;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-8 chain;Tubulin alpha-3E chain no no 0 1 0 0 By matching By MS/MS 2 0 2 1 1 51.183 50.979 3 0.04963 14716 20211116_3440_TMUAki_TMT10x_S_F2 54.768 43.723 4909600 8409600 61466 9446300 4915900 3891800 3981600 5949200 5594200 4973400 6315900 4571600 7850900 433060 9480500 4691800 4353500 4137500 5915700 5646200 4897500 6070400 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4909600 8409600 61466 9446300 4915900 3891800 3981600 5949200 5594200 4973400 6315900 4571600 7850900 433060 9480500 4691800 4353500 4137500 5915700 5646200 4897500 6070400 3 3 1 3 3 3 3 3 3 3 3 333410000 178490000 154920000 2016 1417;2044;2007 1883 11799;11800 14180;14181;14182 14181 10;14 3 AVCMLSNTTAIAEAWARLVHK Carbamidomethyl (C) 2398.225 0.22495469 2007 Q6PEY2 TUBA3E Tubulin alpha-3E chain yes yes 0 1 0 1 By MS/MS 7 0 1 1 65.677 66.082 2 0.076696 22411 20211116_3446_TMUAki_TMT10x_S_F7 42.095 24.728 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2017 2007 1884 11801 14183 14183 14 1 AVCVEAGMIALRR Oxidation (M) 1460.7592 0.75918815 711 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 1 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 42.075 42.094 3 4.7693E-05 10826 20211116_3428_TMUAki_TMT10x_P_F1 97.163 80.137 3841500 5738700 11648 6227800 6878500 6227200 4402800 5970100 5675300 4525800 5400300 3576900 5356600 371880 6318800 6533900 6338100 4634800 6039700 5708200 4479700 5218000 4 4 4 4 4 4 4 4 4 4 4 2057600 2932600 3382.3 3242500 5039800 4706400 2824800 3427000 3238000 2509400 2949000 1915800 2737600 215510 3307900 4777000 4675500 2993900 3521400 3265800 2488600 2853700 2 2 2 2 2 2 2 2 2 2 2 1784000 2806100 8265.7 2985300 1838700 1520800 1578000 2543100 2437200 2016500 2451300 1661100 2619100 156370 3010900 1757000 1662600 1640900 2518200 2442400 1991100 2364300 2 2 2 2 2 2 2 2 2 2 2 607040000 398800000 208240000 2018 711 1885 11802;11803;11804;11805 14184;14185;14186;14187 14184 796 4 AVCVLKGDGPVQGIINFEQK Unmodified 2171.1409 0.14087394 468 P00441 SOD1 Superoxide dismutase [Cu-Zn] yes yes 0 0 0 1 By MS/MS By MS/MS 5.18 3.19 4 3 4 6 5 70.39 70.453 3;4 3.3546E-41 21951 20211116_3447_TMUAki_TMT10x_S_F8 199.56 173.41 100580000 190370000 1805800 131480000 174570000 214210000 142100000 152780000 130330000 138210000 154450000 93658000 177410000 10596000 139530000 166650000 211740000 145470000 158000000 133960000 135580000 148240000 19 19 16 19 19 19 19 19 19 19 19 65205000 121860000 929590 82110000 89530000 168440000 105610000 99442000 85151000 91076000 99302000 60716000 113560000 6189000 87864000 86279000 164720000 105650000 104340000 88024000 89295000 95355000 10 10 8 10 10 10 10 10 10 10 10 35374000 68512000 876240 49372000 85043000 45771000 36490000 53340000 45178000 47131000 55145000 32943000 63858000 4407500 51665000 80373000 47020000 39821000 53665000 45934000 46286000 52888000 9 9 8 9 9 9 9 9 9 9 9 16411000000 9406200000 7004500000 2019 468 1886 11806;11807;11808;11809;11810;11811;11812;11813;11814;11815;11816 14188;14189;14190;14191;14192;14193;14194;14195;14196;14197;14198;14199;14200;14201;14202;14203;14204;14205;14206 14205 19 AVDALLTHCK Unmodified 1126.5805 0.58047873 377 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 0 0 0 0 By MS/MS 6 0 1 1 44.2 44.265 3 0.1073 11130 20211116_3434_TMUAki_TMT10x_P_F6 35.652 17.931 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2020 377 1887 11817 14207 14207 1 AVDDGVNTFK Unmodified 1064.5138 0.51383895 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 44.91 44.757 2 1.3657E-06 15013 20211116_3441_TMUAki_TMT10x_S_F3 155.06 113.56 3426500 6151000 49186 6149400 7518800 5409200 4013000 3139700 4296500 3347800 4567000 3190600 5739500 369440 6262500 7123000 5505200 4262700 3313000 4368100 3261000 4397300 2 2 1 2 2 2 2 2 2 2 2 1951200 3470400 49186 3247200 6069100 3957900 2299600 1634900 2409700 1907000 2391900 1817100 3237400 265280 3339000 5727600 3936000 2533100 1787600 2446000 1851200 2307900 1 1 1 1 1 1 1 1 1 1 1 1475300 2680600 0 2902300 1449600 1451300 1713500 1504800 1886800 1440800 2175100 1373500 2502100 104160 2923400 1395400 1569200 1729600 1525400 1922100 1409800 2089300 1 1 0 1 1 1 1 1 1 1 1 150380000 102980000 47404000 2021 1146 1888 11818;11819;11820 14208;14209;14210 14209 3 AVDFAER Unmodified 806.39227 0.39226725 1384 P62917 RPL8 60S ribosomal protein L8 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.632 1 3 1 2 3 35.614 35.6 2 0.0061233 11342 20211116_3441_TMUAki_TMT10x_S_F3 105.04 76.142 3442700 5302100 13648 5537100 5004700 4132500 3729400 3341200 3323200 2776300 4521700 3205600 4948300 311520 5611200 4766900 4278700 3837000 3420100 3441100 2734800 4324800 4 4 3 4 4 4 4 4 4 4 4 1288900 1833900 0 1877000 3016600 2462200 1496900 1579700 1545100 1212800 1904400 1200000 1711400 122550 1920500 2853700 2452400 1599300 1639700 1582500 1199600 1826000 1 1 0 1 1 1 1 1 1 1 1 2153900 3468100 13648 3660100 1988100 1670300 2232500 1761400 1778100 1563500 2617300 2005600 3236900 188970 3690600 1913200 1826400 2237700 1780400 1858500 1535100 2498800 3 3 3 3 3 3 3 3 3 3 3 393580000 44109000 349470000 2022 1384 1889 11821;11822;11823;11824;11825 14211;14212;14213;14214 14214 4 AVDIPHMDIEALK Oxidation (M) 1466.7439 0.74391524 1381 P62906 RPL10A 60S ribosomal protein L10a yes yes 0 0 1 0 By MS/MS By MS/MS 4.22 1.31 1 2 2 2 2 5 4 53.431 53.423 3 4.7933E-07 15959 20211116_3433_TMUAki_TMT10x_P_F5 119.25 90.448 33600000 53023000 234830 66075000 46979000 51985000 32835000 46532000 50703000 41504000 47677000 31283000 49525000 2785200 66275000 44678000 53705000 34599000 47435000 50692000 40742000 46086000 8 8 5 8 8 8 8 8 8 8 8 18488000 26886000 132680 34178000 35161000 40467000 21433000 23893000 25902000 21555000 24637000 17212000 25115000 1489100 34446000 33351000 40465000 22596000 25060000 26110000 21148000 23805000 4 4 2 4 4 4 4 4 4 4 4 15112000 26137000 102140 31897000 11818000 11518000 11403000 22638000 24801000 19949000 23040000 14072000 24410000 1296100 31828000 11327000 13240000 12003000 22375000 24582000 19594000 22281000 4 4 3 4 4 4 4 4 4 4 4 7135000000 3657400000 3477600000 2023 1381 1890 11826;11827;11828;11829;11830;11831;11832;11833;11834 14215;14216;14217;14218;14219;14220;14221;14222;14223 14218 1852 9 AVDIPHMDIEALK Unmodified 1450.749 0.74900062 1381 P62906 RPL10A 60S ribosomal protein L10a yes yes 0 0 0 0 By MS/MS By MS/MS 4.46 0.746 9 2 2 10 3 80.798 80.814 3 6.4693E-15 19837 20211116_3444_TMUAki_TMT10x_S_F5 170.07 135.69 78173000 115070000 547430 144530000 83524000 74808000 73786000 41009000 34948000 45109000 75208000 72787000 107490000 6609800 144320000 79846000 79750000 74151000 43524000 38681000 43887000 71304000 17 16 8 17 17 16 16 17 16 16 16 39677000 55937000 236230 73560000 50404000 51447000 45036000 21027000 17824000 22764000 37583000 36942000 52261000 3268100 73468000 48184000 53091000 45120000 22966000 20025000 22161000 35644000 11 10 4 11 11 10 10 11 10 10 10 38495000 59136000 311210 70967000 33121000 23361000 28749000 19982000 17124000 22345000 37624000 35845000 55224000 3341700 70851000 31662000 26660000 29030000 20558000 18656000 21726000 35660000 6 6 4 6 6 6 6 6 6 6 6 5130100000 2078300000 3051700000 2024 1381 1890 11835;11836;11837;11838;11839;11840;11841;11842;11843;11844;11845;11846;11847 14224;14225;14226;14227;14228;14229;14230;14231;14232;14233;14234;14235;14236;14237;14238;14239;14240;14241;14242;14243 14241 20 AVDIPHMDIEALKK Oxidation (M) 1594.8389 0.83887826 1381 P62906 RPL10A 60S ribosomal protein L10a yes yes 0 0 1 1 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 49.773 50.067 4 7.184E-05 15340 20211116_3435_TMUAki_TMT10x_P_F7 93.823 70.685 32918000 52667000 157830 58462000 55210000 52740000 32161000 57755000 63165000 45082000 49767000 30649000 49166000 2852500 59146000 52347000 54194000 34788000 58089000 62427000 44552000 48423000 7 7 4 7 7 7 7 7 7 7 7 12127000 19129000 140330 21270000 35621000 35993000 17575000 21042000 24012000 17414000 18278000 11292000 17857000 1356500 21767000 33703000 35423000 18970000 22040000 23943000 17157000 17810000 3 3 2 3 3 3 3 3 3 3 3 20791000 33538000 17500 37192000 19589000 16747000 14586000 36713000 39153000 27668000 31489000 19357000 31309000 1496100 37379000 18644000 18771000 15817000 36049000 38484000 27395000 30613000 4 4 2 4 4 4 4 4 4 4 4 6307400000 3646300000 2661000000 2025 1381 1891 11848;11849;11850;11851;11852;11853 14244;14245;14246;14247;14248;14249;14250 14246 1852 7 AVDIPHMDIEALKK Unmodified 1578.844 0.84396364 1381 P62906 RPL10A 60S ribosomal protein L10a yes yes 0 0 0 1 By MS/MS By MS/MS 6.9 0.943 1 2 4 3 4 6 61.658 61.849 4 1.6523E-19 19397 20211116_3435_TMUAki_TMT10x_P_F7 175.15 136.52 30381000 47521000 440880 59151000 45236000 38679000 34324000 18079000 13692000 18990000 33292000 28291000 44386000 3089500 59216000 43124000 40203000 34748000 19448000 15527000 18509000 31509000 9 9 7 9 9 9 9 9 9 9 9 17366000 26509000 103640 32512000 36808000 30711000 25113000 10268000 7862400 10540000 17986000 16170000 24758000 1760400 32717000 35003000 30938000 25550000 11480000 9112700 10282000 17037000 3 3 1 3 3 3 3 3 3 3 3 13015000 21012000 337240 26639000 8428000 7967600 9211100 7811200 5829200 8450000 15306000 12121000 19627000 1329100 26499000 8121300 9265000 9197500 7968900 6414400 8226400 14472000 6 6 6 6 6 6 6 6 6 6 6 8702100000 5058300000 3643800000 2026 1381 1891 11854;11855;11856;11857;11858;11859;11860;11861;11862;11863 14251;14252;14253;14254;14255;14256;14257;14258;14259 14253 9 AVDLVEEESGAPGEEQRR Unmodified 1969.9341 0.93411186 257 O60231 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 40.374 40.305 3 6.3968E-52 12095 20211116_3439_TMUAki_TMT10x_S_F1 237.89 218.59 983670 1487900 2095.7 2169900 3043300 2339700 1298700 1444000 1822500 1169300 1619400 915780 1390900 95716 2168000 2873300 2352900 1424800 1505200 1824000 1153300 1568500 3 3 1 3 3 3 3 3 3 3 3 758480 1114300 0 1642600 2868000 2193500 1138400 1093000 1428500 887450 1222600 706090 1041700 75791 1646600 2705400 2175900 1254200 1160700 1433200 875200 1185800 2 2 0 2 2 2 2 2 2 2 2 225200 373660 2095.7 527320 175340 146170 160260 351050 394060 281840 396800 209690 349240 19925 521400 167870 177020 170580 344510 390760 278110 382690 1 1 1 1 1 1 1 1 1 1 1 125510000 82462000 43049000 2027 257 1892 11864;11865 14260;14261;14262 14262 3 AVDPEDDFQR Unmodified 1190.5204 0.52038089 2610 Q99848 EBNA1BP2 Probable rRNA-processing protein EBP2 yes yes 0 0 0 0 By matching By MS/MS 1.33 0.471 2 1 1 2 39.629 39.611 2 0.00011519 11916 20211116_3439_TMUAki_TMT10x_S_F1 121.35 87.795 659690 1098300 12600 1456300 727440 692740 696280 1329500 1556700 968150 1344400 614330 1026100 67385 1448900 697490 767120 734530 1308800 1538500 960430 1303500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 659690 1098300 12600 1456300 727440 692740 696280 1329500 1556700 968150 1344400 614330 1026100 67385 1448900 697490 767120 734530 1308800 1538500 960430 1303500 2 2 2 2 2 2 2 2 2 2 2 131930000 77575000 54359000 2028 2610 1893 11866;11867;11868 14263;14264 14263 2 AVDPEDDFQREMSFYR Oxidation (M) 2019.8633 0.86325511 2610 Q99848 EBNA1BP2 Probable rRNA-processing protein EBP2 yes yes 0 0 1 1 By MS/MS By MS/MS 1.5 0.5 2 2 1 3 51.618 51.396 3 0.0034496 16672 20211116_3439_TMUAki_TMT10x_S_F1 61.265 50.672 2332700 4022400 34525 4399000 2594000 2289400 2157500 3751800 3798000 3519200 3381100 2172200 3754700 229230 4429600 2478400 2495300 2262000 3733800 3777200 3446600 3274600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2332700 4022400 34525 4399000 2594000 2289400 2157500 3751800 3798000 3519200 3381100 2172200 3754700 229230 4429600 2478400 2495300 2262000 3733800 3777200 3446600 3274600 2 2 2 2 2 2 2 2 2 2 2 313830000 0 313830000 2029 2610 1894 11869;11870;11871;11872 14265;14266;14267;14268 14266 2857 4 AVDPTSGQLYGLAR Unmodified 1446.7467 0.74669243 2286 Q8TEM1 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 53.823 53.922 2 5.7013E-14 15405 20211116_3445_TMUAki_TMT10x_S_F6 140.09 90.373 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2030 2286 1895 11873;11874 14269;14270 14270 2 AVDQHNAEAQDIFGK Unmodified 1641.7747 0.7746981 1184 P52732 KIF11 Kinesin-like protein KIF11 yes yes 0 0 0 0 By MS/MS 4 0 1 1 45.021 45.133 3 1.7138E-07 12420 20211116_3431_TMUAki_TMT10x_P_F4 105.19 86.778 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2031 1184 1896 11875 14271 14271 1 AVDQVCTFLFK Unmodified 1326.6642 0.66420836 195 O15541 RNF113A RING finger protein 113A yes yes 0 0 0 0 By MS/MS 8 0 1 1 74.895 74.76 2 1.0249E-05 23708 20211116_3447_TMUAki_TMT10x_S_F8 117.25 88.293 5636600 9304200 32653 9454700 6693200 5696400 6361700 5511700 4955600 5418700 6971500 5248300 8682400 495340 9578500 6410200 6030800 6426800 5610500 5174500 5296000 6662800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5636600 9304200 32653 9454700 6693200 5696400 6361700 5511700 4955600 5418700 6971500 5248300 8682400 495340 9578500 6410200 6030800 6426800 5610500 5174500 5296000 6662800 2 2 1 2 2 2 2 2 2 2 2 487820000 0 487820000 2032 195 1897 11876 14272;14273 14272 2 AVDSLVPIGR Unmodified 1025.5869 0.58694431 805 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.29 1.03 2 2 2 1 3 4 52.202 52.397 2 3.4565E-11 14747 20211116_3445_TMUAki_TMT10x_S_F6 212.2 177.09 35176000 54730000 192670 62351000 53904000 55384000 37254000 47773000 49943000 42629000 48053000 32753000 51097000 3270800 62966000 51273000 56680000 39052000 48803000 50186000 41845000 46414000 6 6 4 6 6 6 6 6 6 6 6 19291000 28802000 126140 33453000 39158000 42299000 24518000 26588000 28396000 23688000 25846000 17962000 26893000 1982900 33931000 37186000 42193000 25755000 27739000 28628000 23254000 25012000 3 3 2 3 3 3 3 3 3 3 3 15885000 25927000 66535 28899000 14745000 13085000 12736000 21185000 21547000 18941000 22207000 14791000 24204000 1287800 29035000 14087000 14488000 13297000 21064000 21558000 18591000 21402000 3 3 2 3 3 3 3 3 3 3 3 5580600000 2991800000 2588700000 2033 805 1898 11877;11878;11879;11880;11881;11882;11883 14274;14275;14276;14277;14278;14279 14279 6 AVDSQILPK Unmodified 969.5495 0.54949617 1499 Q02878 RPL6 60S ribosomal protein L6 yes yes 0 0 0 0 By MS/MS By MS/MS 4.43 0.495 4 3 3 4 46.7 46.862 2;3 8.0071E-05 13379 20211116_3433_TMUAki_TMT10x_P_F5 141.52 101.48 22364000 36307000 97757 37712000 31754000 28426000 24736000 28579000 28854000 23371000 32145000 20823000 33884000 2017500 38234000 30273000 29535000 25586000 28894000 29291000 23040000 30907000 6 6 4 6 6 6 6 6 6 6 6 7273700 11666000 47466 12508000 15883000 14891000 9063300 8397500 8706800 7639200 9950400 6772700 10889000 744700 12736000 15059000 14877000 9538800 8843000 8917400 7492100 9560300 2 2 1 2 2 2 2 2 2 2 2 15090000 24641000 50291 25204000 15872000 13535000 15673000 20182000 20147000 15732000 22194000 14050000 22995000 1272800 25498000 15214000 14658000 16047000 20051000 20373000 15548000 21347000 4 4 3 4 4 4 4 4 4 4 4 1617800000 936330000 681440000 2034 1499 1899 11884;11885;11886;11887;11888;11889;11890 14280;14281;14282;14283;14284;14285;14286;14287 14282 8 AVECPPPR Unmodified 924.44874 0.44873627 1760 Q15046;Q15046-2 KARS Lysine--tRNA ligase yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 28.297 28.042 2 0.001405 8348 20211116_3441_TMUAki_TMT10x_S_F3 122.5 105.23 338970 576270 527.65 499870 384640 438860 401110 257350 293960 330630 402450 315610 537440 27718 514440 369160 446770 402680 273010 307590 319890 384870 2 2 1 2 2 2 2 2 2 2 2 143530 222720 0 203290 192790 270440 158990 132860 143470 149750 176730 133630 207750 11074 209760 183910 268280 162560 142530 147820 145560 169450 1 1 0 1 1 1 1 1 1 1 1 195440 353550 527.65 296590 191850 168420 242120 124490 150490 180870 225730 181980 329690 16645 304670 185250 178490 240130 130470 159770 174330 215420 1 1 1 1 1 1 1 1 1 1 1 10683000 4013400 6669500 2035 1760 1900 11891;11892 14288;14289 14289 2 AVEDDFVEMR Oxidation (M) 1225.5285 0.52850274 2663 Q9BTE3;Q9BTE3-2;Q9BTE3-3 MCMBP Mini-chromosome maintenance complex-binding protein yes no 0 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 42.885 42.786 2 0.0083705 11101 20211116_3428_TMUAki_TMT10x_P_F1 75.38 56.649 1958400 3228400 4556.5 4006500 3633700 3494700 2220700 2339000 2510100 1829000 2677000 1823500 3015300 181610 4024600 3448400 3565800 2335400 2421200 2546900 1807300 2577300 2 2 1 2 2 2 2 2 2 2 2 1160000 1899500 4556.5 2521300 3033300 2941300 1698000 1360500 1570200 1131500 1708500 1080100 1774800 126650 2534500 2875100 2935000 1788300 1456200 1608000 1114500 1643800 1 1 1 1 1 1 1 1 1 1 1 798440 1328900 0 1485200 600470 553390 522700 978520 939880 697470 968540 743360 1240600 54954 1490200 573250 630790 547180 965020 938930 692760 933430 1 1 0 1 1 1 1 1 1 1 1 166060000 110630000 55426000 2036 2663 1901 11893;11894 14290;14291 14290 2885 2 AVEDIHGLFSLSK Unmodified 1414.7456 0.7456298 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 65.698 65.912 3 1.0793E-14 19988 20211116_3434_TMUAki_TMT10x_P_F6 163.51 132.68 15796000 26031000 156080 27489000 19297000 26669000 16805000 16094000 16344000 17222000 19371000 14708000 24295000 1457700 27928000 18447000 26982000 17162000 16931000 16755000 16773000 18593000 5 5 3 5 5 5 5 5 5 5 5 8986300 14214000 86866 14753000 11915000 19983000 10308000 8874400 8996800 9494600 10429000 8367700 13265000 855510 15091000 11389000 19785000 10500000 9602100 9260900 9247400 10016000 3 3 2 3 3 3 3 3 3 3 3 6809300 11817000 69211 12736000 7382400 6686500 6496700 7219700 7347100 7727200 8942200 6340400 11030000 602220 12837000 7058200 7196800 6662500 7328800 7493800 7525900 8576800 2 2 1 2 2 2 2 2 2 2 2 3122400000 1954700000 1167700000 2037 1684 1902 11895;11896;11897;11898;11899 14292;14293;14294;14295;14296 14292 5 AVEDMLETLQITQS Unmodified 1576.7654 0.76543854 1749 Q15006 EMC2 ER membrane protein complex subunit 2 yes yes 0 0 0 0 By MS/MS By matching 1.33 0.471 2 1 2 1 82.048 82.04 2 0.0002982 27122 20211116_3428_TMUAki_TMT10x_P_F1 86.624 68.893 3059600 4509700 32367 4649500 2373800 4828200 2655800 2312300 2532900 2873600 3841000 2849000 4208600 274220 4736100 2285100 4851100 2675300 2494800 2628600 2783300 3664800 2 2 2 2 2 2 2 2 2 2 2 3059600 4509700 32367 4649500 2373800 4828200 2655800 2312300 2532900 2873600 3841000 2849000 4208600 274220 4736100 2285100 4851100 2675300 2494800 2628600 2783300 3664800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 331030000 237870000 93156000 2038 1749 1903 11900;11901;11902 14297;14298 14297 2 AVEEKIEWLESHQDADIEDFK Unmodified 2530.1864 0.18636339 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 76.807 76.714 4 5.5755E-06 26890 20211116_3430_TMUAki_TMT10x_P_F3 82.037 68.717 7378300 11363000 26367 11426000 7952700 10013000 8412900 6298800 5691900 6646300 8676400 6870000 10603000 630370 11630000 7637600 10204000 8425200 6602000 6015500 6476800 8277400 2 2 1 2 2 2 2 2 2 2 2 5321200 7616600 0 8389100 4838700 7627200 5614500 3896800 3607000 4301100 5905100 4954500 7110000 420450 8492300 4658200 7733200 5592400 4162400 3838900 4184000 5625300 1 1 0 1 1 1 1 1 1 1 1 2057100 3746000 26367 3036500 3113900 2385700 2798300 2402000 2084900 2345200 2771300 1915600 3492800 209920 3138100 2979400 2470900 2832900 2439600 2176600 2292800 2652100 1 1 1 1 1 1 1 1 1 1 1 1796200000 1021500000 774660000 2039 614 1904 11903;11904 14299 14299 1 AVEEKIEWLESHQDADIEDFKAK Unmodified 2729.3184 0.31844019 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 2 By MS/MS 5.5 0.5 1 1 2 73.211 73.205 5 7.2681E-06 23019 20211116_3434_TMUAki_TMT10x_P_F6 81.312 68.635 4302100 7476900 0 4983800 5072000 9703500 6299100 4901200 4144700 4507100 5232000 4005500 6967400 343770 5330900 4892600 9486200 6258600 5213800 4349400 4418100 5013400 1 1 0 1 1 1 1 1 1 1 1 4302100 7476900 0 4983800 5072000 9703500 6299100 4901200 4144700 4507100 5232000 4005500 6967400 343770 5330900 4892600 9486200 6258600 5213800 4349400 4418100 5013400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1405400000 1405400000 0 2040 614 1905 11905;11906 14300 14300 1 AVEGCVSASQAATEDGQLLR Unmodified 2060.9797 0.97968185 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.8 0.748 2 2 1 3 2 50.222 50.016 3 1.6864E-41 16028 20211116_3430_TMUAki_TMT10x_P_F3 202.35 187.65 7677700 12958000 107830 15011000 13391000 13556000 9889000 10699000 10122000 8804100 11091000 7149300 12098000 790820 15147000 12756000 13836000 10221000 10965000 10321000 8676600 10669000 7 7 4 7 7 7 7 7 7 7 7 4682300 7864000 76619 9150100 10244000 11002000 7265800 6531300 6275900 5301800 7118400 4360100 7342700 523630 9271500 9751000 10994000 7495000 6829400 6457900 5228700 6840800 4 4 2 4 4 4 4 4 4 4 4 2995400 5093600 31208 5860500 3147000 2554300 2623200 4167300 3845900 3502200 3972400 2789200 4755700 267180 5875100 3005400 2842300 2726100 4135700 3863500 3447900 3828100 3 3 2 3 3 3 3 3 3 3 3 1890800000 1030300000 860490000 2041 3293 1906 11907;11908;11909;11910;11911 14301;14302;14303;14304;14305;14306;14307;14308 14303 8 AVEHINK Unmodified 809.43955 0.43955179 520 P06733 ENO1 Alpha-enolase yes yes 0 0 0 0 By MS/MS By MS/MS 3.12 1.54 2 1 1 2 2 6 2 29.154 29.095 2;3 0.0013962 5986 20211116_3431_TMUAki_TMT10x_P_F4 116.88 36.422 4887400 7858000 39313 6023300 4696800 7336700 4932900 3204100 3568700 3494900 5138900 4550900 7325500 427640 6294000 4511100 7300300 4949100 3475000 3746000 3401300 4908700 7 7 4 7 7 7 7 7 7 7 7 4261500 6811000 36982 5204400 3961000 6672000 4169800 2752300 3104200 3011600 4459800 3968100 6349400 376160 5444800 3805000 6618400 4185700 3004000 3252700 2930600 4260200 5 5 3 5 5 5 5 5 5 5 5 625930 1047000 2331.2 818850 735800 664680 763170 451740 464580 483330 679100 582790 976080 51480 849170 706080 681860 763440 470990 493310 470740 648470 2 2 1 2 2 2 2 2 2 2 2 445440000 379570000 65862000 2042 520 1907 11912;11913;11914;11915;11916;11917;11918;11919 14309;14310;14311;14312;14313;14314;14315;14316 14311 8 AVEHLDDLPGALSELSDLHAHK Unmodified 2366.1866 0.18663816 36 CON__P01966 yes yes 0 0 0 0 By MS/MS By MS/MS 4.16 1.42 3 4 4 3 5 10 9 64.454 64.335 3;4;5 1.025E-26 21485 20211116_3429_TMUAki_TMT10x_P_F2 169.39 155.8 + 116730000 158290000 1311800 206780000 175860000 255910000 164910000 237490000 236480000 312100000 203520000 108690000 147880000 10744000 208260000 168390000 257260000 170070000 244630000 236280000 301740000 197350000 30 30 18 30 30 30 30 30 30 30 30 60947000 77366000 908120 98190000 122530000 205760000 102740000 114180000 116720000 143380000 98003000 56753000 72269000 6547500 100310000 117030000 200920000 105680000 121590000 117470000 138830000 95120000 17 17 12 17 17 17 17 17 17 17 17 55783000 80919000 403720 108590000 53326000 50152000 62174000 123310000 119760000 168720000 105520000 51940000 75610000 4196100 107960000 51360000 56340000 64386000 123040000 118810000 162910000 102230000 13 13 6 13 13 13 13 13 13 13 13 103480000000 55463000000 48015000000 2043 36 1908 11920;11921;11922;11923;11924;11925;11926;11927;11928;11929;11930;11931;11932;11933;11934;11935;11936;11937;11938 14317;14318;14319;14320;14321;14322;14323;14324;14325;14326;14327;14328;14329;14330;14331;14332;14333;14334;14335;14336;14337;14338;14339;14340;14341;14342;14343;14344;14345;14346 14318 30 AVEIGVKK Unmodified 842.52255 0.52255314 1993 Q6P1N9 TATDN1 Putative deoxyribonuclease TATDN1 yes yes 0 0 0 1 By MS/MS 7 0 1 1 37.244 37.682 3 0.042996 10425 20211116_3435_TMUAki_TMT10x_P_F7 55.567 22.568 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2044 1993 1909 11939 14347 14347 1 AVELAANTK Unmodified 915.50255 0.50254598 853 P29401;P29401-2 TKT Transketolase yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 38.442 38.526 2 0.0002127 9718 20211116_3442_TMUAki_TMT10x_S_F4 134.25 77.684 4404300 6619200 17831 7860200 6740400 6074800 4246100 3593900 4179800 3540800 5410100 4100800 6181100 384860 7904300 6399500 6242900 4435400 3777700 4298700 3460400 5180800 3 3 1 3 3 3 3 3 3 3 3 2462700 3641800 0 4498400 5194000 4628500 2818900 1898900 2321100 1880800 2880100 2292800 3401400 214280 4530600 4918700 4645800 2968100 2067900 2402900 1837600 2761000 1 1 0 1 1 1 1 1 1 1 1 1941600 2977400 17831 3361700 1546400 1446300 1427200 1695000 1858700 1660000 2530000 1807900 2779700 170570 3373700 1480800 1597100 1467300 1709800 1895800 1622700 2419900 2 2 1 2 2 2 2 2 2 2 2 142620000 108940000 33684000 2045 853 1910 11940;11941;11942;11943 14348;14349;14350 14349 3 AVELLGDIVQNCSLEDSQIEK Unmodified 2359.1577 0.15770579 891 P31930 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 0 0 0 0 By MS/MS 4 0 1 1 79.048 79.061 3 0.0019266 26333 20211116_3431_TMUAki_TMT10x_P_F4 58.712 49.428 2397500 4037300 0 3406400 2142300 4123500 2542300 2327200 2436800 2443400 2793300 2232200 3764900 181250 3530400 2063300 4116100 2554600 2460200 2496300 2381500 2683500 1 1 0 1 1 1 1 1 1 1 1 2397500 4037300 0 3406400 2142300 4123500 2542300 2327200 2436800 2443400 2793300 2232200 3764900 181250 3530400 2063300 4116100 2554600 2460200 2496300 2381500 2683500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1116400000 1116400000 0 2046 891 1911 11944 14351 14351 1 AVENYLIQMAR Unmodified 1306.6704 0.67035637 127 O14737;O14737-2 PDCD5 Programmed cell death protein 5 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 66.29 66.763 2 1.0599E-15 22708 20211116_3446_TMUAki_TMT10x_S_F7 203.97 143.18 12655000 20264000 70391 22026000 14808000 14125000 14278000 7679800 5638100 8117000 13699000 11783000 18915000 1084800 22227000 14186000 14732000 14243000 8146700 6399900 7909400 12966000 2 2 1 2 2 2 2 2 2 2 2 6552800 10367000 0 10973000 8155200 9458800 8214300 3914500 2713500 4143500 6932800 6100900 9675600 505590 11129000 7817200 9604800 8158700 4266700 3150900 4037300 6557200 1 1 0 1 1 1 1 1 1 1 1 6102300 9897300 70391 11053000 6652800 4666500 6063400 3765300 2924600 3973500 6766300 5682300 9239500 579230 11099000 6368400 5127600 6084000 3880000 3248900 3872100 6408300 1 1 1 1 1 1 1 1 1 1 1 1652900000 975950000 676960000 2047 127 1912 11945;11946 14352;14353 14353 2 AVEQGGAFSNPETLDLYR Unmodified 1965.9432 0.94321999 2111 Q86V21;Q86V21-3 AACS Acetoacetyl-CoA synthetase yes no 0 0 0 0 By MS/MS 4 0 1 1 62.317 62.18 3 0.0093621 19857 20211116_3442_TMUAki_TMT10x_S_F4 48.371 13.348 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2048 2111 1913 11947 14354 14354 1 AVETPPLSSVNLLEGLSR Unmodified 1881.0207 0.020742027 1744 Q14C86;Q14C86-6;Q14C86-5;Q14C86-4;Q14C86-2;Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 yes no 0 0 0 0 By MS/MS 6 0 1 1 77.877 77.847 2 0.0031151 24859 20211116_3434_TMUAki_TMT10x_P_F6 65.753 43.033 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2049 1744 1914 11948 14355 14355 1 AVEYNALFK Unmodified 1053.5495 0.54949617 241 O43747;O43747-2 AP1G1 AP-1 complex subunit gamma-1 yes no 0 0 0 0 By MS/MS 6 0 1 1 59.287 59.337 2 0.002769 17276 20211116_3434_TMUAki_TMT10x_P_F6 80.688 45.864 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2050 241 1915 11949 14356 14356 1 AVEYYFASDASAVIEHTNR Unmodified 2142.0018 0.0017974991 1525 Q06210;Q06210-2 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes no 0 0 0 0 By MS/MS By MS/MS 4 1 1 1 1 1 66.926 67.04 3 0.00014278 21629 20211116_3433_TMUAki_TMT10x_P_F5 67.227 56.373 2451300 3851100 0 3553300 2628100 4711400 2930500 2926300 2556300 2591200 2953400 2281700 3592400 123560 3663300 2522200 4688100 2945200 3055300 2631100 2544500 2836700 1 1 0 1 1 1 1 1 1 1 1 2451300 3851100 0 3553300 2628100 4711400 2930500 2926300 2556300 2591200 2953400 2281700 3592400 123560 3663300 2522200 4688100 2945200 3055300 2631100 2544500 2836700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 497010000 497010000 0 2051 1525 1916 11950;11951 14357;14358 14357 2 AVFDETYPDPVR Unmodified 1407.667 0.66704513 1104 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 55.202 55.052 2 6.7625E-24 18081 20211116_3430_TMUAki_TMT10x_P_F3 242.83 201.64 25950000 44595000 122950 43712000 40047000 59185000 36992000 47440000 49121000 45182000 41649000 24161000 41609000 2217300 44888000 38313000 59076000 38058000 48759000 49176000 44220000 40409000 12 12 5 12 12 12 12 12 12 12 12 16103000 27014000 74701 26382000 29278000 49023000 27230000 28501000 30359000 27968000 25117000 14993000 25205000 1455600 27297000 28017000 48084000 27825000 29998000 30562000 27337000 24391000 6 6 3 6 6 6 6 6 6 6 6 9846900 17581000 48253 17331000 10769000 10162000 9761800 18939000 18762000 17214000 16533000 9167900 16404000 761630 17591000 10296000 10992000 10233000 18762000 18614000 16883000 16017000 6 6 2 6 6 6 6 6 6 6 6 5969500000 3317400000 2652100000 2052 1104 1917 11952;11953;11954;11955;11956;11957;11958;11959 14359;14360;14361;14362;14363;14364;14365;14366;14367;14368;14369;14370 14361 12 AVFPSIVGR Unmodified 944.54435 0.54435122 1276;1406;1414 P60709;Q6S8J3;A5A3E0;P0CG38;P63261;P68133;P68032;P62736;P63267;P63267-2 ACTB;POTEE;POTEF;POTEI;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle no no 0 0 0 0 By MS/MS By MS/MS 3.5 2.69 2 2 2 2 4 4 54.703 54.547 2 6.0687E-06 17959 20211116_3430_TMUAki_TMT10x_P_F3 160.54 107.19 123250000 191440000 5067300 213870000 158460000 197270000 129450000 193040000 171050000 147330000 185670000 114790000 178720000 15367000 216350000 151520000 201890000 134120000 195120000 172580000 144920000 178650000 14 14 13 14 14 14 14 14 13 13 13 62156000 85889000 2117800 96889000 112480000 133660000 78173000 82099000 80562000 71251000 97667000 57889000 80185000 7765000 98615000 107110000 132740000 81162000 85750000 82461000 70034000 93686000 8 8 7 8 8 8 8 8 8 8 8 61093000 105560000 2949500 116990000 45985000 63611000 51281000 110940000 90486000 76075000 88001000 56906000 98537000 7602300 117740000 44404000 69159000 52953000 109360000 90120000 74886000 84968000 6 6 6 6 6 6 6 6 5 5 5 14367000000 8069500000 6297700000 2053 1276;1406;1414 1918 11960;11961;11962;11963;11964;11965;11966;11967 14371;14372;14373;14374;14375;14376;14377;14378;14379;14380;14381;14382;14383;14384 14377 14 AVFPSIVGRPR Unmodified 1197.6982 0.6982261 1276;1406;1414 P60709;Q6S8J3;A5A3E0;P0CG38;P63261;P68133;P68032;P62736;P63267;P63267-2 ACTB;POTEE;POTEF;POTEI;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle no no 0 0 0 1 By MS/MS By MS/MS 4.95 1.94 2 4 6 4 7 8 10 2 21 22 38.451 38.546 2;3 9.6447E-17 11322 20211116_3445_TMUAki_TMT10x_S_F6 219.97 178.79 122910000 205690000 3746600 223680000 219290000 238850000 139500000 184010000 178980000 146360000 187400000 114470000 192000000 14902000 227140000 208480000 241160000 146890000 188620000 180650000 144490000 180510000 53 53 46 53 53 53 53 52 53 52 53 73202000 120110000 2200800 130270000 166750000 194980000 98414000 112620000 109980000 88515000 111230000 68174000 112110000 9332300 133150000 158300000 192790000 103760000 117940000 111420000 87442000 107260000 23 23 18 23 23 23 23 23 23 23 23 49711000 85582000 1545800 93405000 52539000 43868000 41081000 71388000 69000000 57843000 76169000 46297000 79886000 5569900 93995000 50180000 48364000 43134000 70682000 69228000 57050000 73255000 30 30 28 30 30 30 30 29 30 29 30 244680000000 129890000000 114800000000 2054 1276;1406;1414 1919 11968;11969;11970;11971;11972;11973;11974;11975;11976;11977;11978;11979;11980;11981;11982;11983;11984;11985;11986;11987;11988;11989;11990;11991;11992;11993;11994;11995;11996;11997;11998;11999;12000;12001;12002;12003;12004;12005;12006;12007;12008;12009;12010 14385;14386;14387;14388;14389;14390;14391;14392;14393;14394;14395;14396;14397;14398;14399;14400;14401;14402;14403;14404;14405;14406;14407;14408;14409;14410;14411;14412;14413;14414;14415;14416;14417;14418;14419;14420;14421;14422;14423;14424;14425;14426;14427;14428;14429;14430;14431;14432;14433;14434;14435;14436;14437;14438;14439;14440;14441;14442;14443;14444;14445;14446;14447;14448;14449 14440 65 AVFQANQENLPILK Unmodified 1583.8671 0.86714192 497 P05023;P05023-3;P05023-4;P05023-2 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 4 2 3 3 66.842 67.156 2;3 9.1241E-33 22331 20211116_3435_TMUAki_TMT10x_P_F7 220.94 171.52 70486000 116420000 405670 116020000 80911000 96468000 76039000 63092000 54343000 70150000 83812000 65632000 108630000 6331000 118090000 77481000 98731000 76712000 66044000 57280000 68221000 79938000 7 7 5 7 7 7 7 7 7 7 7 26666000 43813000 171030 43294000 39860000 53506000 33162000 23535000 21088000 26526000 31984000 24830000 40880000 2518300 44356000 38060000 53205000 33614000 25531000 22369000 25784000 30516000 3 3 2 3 3 3 3 3 3 3 3 43820000 72609000 234630 72724000 41051000 42962000 42876000 39558000 33255000 43623000 51828000 40802000 67753000 3812700 73737000 39422000 45526000 43098000 40513000 34911000 42437000 49422000 4 4 3 4 4 4 4 4 4 4 4 3814000000 2435600000 1378300000 2055 497 1920 12011;12012;12013;12014;12015;12016 14450;14451;14452;14453;14454;14455;14456;14457 14450 8 AVFQANQENLPILKR Unmodified 1739.9683 0.96825295 497 P05023;P05023-3;P05023-4;P05023-2 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes no 0 0 0 1 By MS/MS 2 0 1 1 56.198 55.948 3 4.5299E-44 18041 20211116_3429_TMUAki_TMT10x_P_F2 271.73 243.4 2675500 4645700 0 4005500 4507200 7941100 4115400 5943200 5192800 4918800 4369100 2490800 4332500 198160 4190300 4308600 7802300 4228200 6112800 5206400 4846100 4240200 1 1 0 1 1 1 1 1 1 1 1 2675500 4645700 0 4005500 4507200 7941100 4115400 5943200 5192800 4918800 4369100 2490800 4332500 198160 4190300 4308600 7802300 4228200 6112800 5206400 4846100 4240200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 878950000 878950000 0 2056 497 1921 12017 14458 14458 1 AVFQESIR Unmodified 948.50288 0.50288033 62 O00139;O00139-2;O00139-1;O00139-5;O00139-4 KIF2A Kinesin-like protein KIF2A yes no 0 0 0 0 By MS/MS 4 0 1 1 40.413 40.611 2 0.0018361 11018 20211116_3442_TMUAki_TMT10x_S_F4 110.12 49.143 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2057 62 1922 12018 14459 14459 1 AVFVDLEPTVIDEVR Unmodified 1700.8985 0.89850163 1417;2044 P68363;P68363-2;Q71U36;Q71U36-2;Q9BQE3 TUBA1B;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain no no 0 0 0 0 By MS/MS By MS/MS 2.98 1.51 57 137 114 65 26 14 21 225 209 60.644 60.601 2;3 4.5262E-149 31210 20211116_3428_TMUAki_TMT10x_P_F1 386.59 338.15 1082400000 1759100000 11893000 1632700000 1210100000 1512000000 1269700000 985630000 996020000 1087100000 1323500000 1007800000 1641000000 80992000 1672700000 1161500000 1536000000 1276400000 1031700000 1036900000 1057600000 1266600000 452 455 169 454 453 454 451 453 452 453 455 501620000 799000000 1736000 754610000 434170000 837510000 532800000 445760000 456970000 496120000 580110000 467000000 745390000 30285000 774200000 418290000 839280000 532940000 474490000 472570000 482470000 555800000 229 232 82 231 230 231 229 231 229 230 232 580830000 960130000 10157000 878080000 775930000 674500000 736940000 539880000 539050000 591000000 743370000 540830000 895600000 50707000 898530000 743200000 696670000 743420000 557230000 564300000 575090000 710780000 223 223 87 223 223 223 222 222 223 223 223 687300000000 355720000000 331580000000 2058 1417;2044 1923 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14514 529 AVFVSEGK Unmodified 835.44397 0.44396847 883 P31146 CORO1A Coronin-1A yes yes 0 0 0 0 By MS/MS 5 0 1 1 42.551 42.677 2 0.044644 10583 20211116_3444_TMUAki_TMT10x_S_F5 64.567 33.849 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2059 883 1924 12453 14989 14989 1 AVFWDIK Unmodified 877.46979 0.46978929 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 68.321 68.307 2 0.0031485 21565 20211116_3436_TMUAki_TMT10x_P_F8 119.89 65.338 22748000 36611000 384630 37714000 27667000 27272000 26305000 12596000 9451000 14558000 24437000 21183000 34166000 2313300 38240000 26518000 28097000 26231000 13606000 10884000 14137000 23109000 2 2 2 2 2 2 2 2 2 2 2 12277000 19676000 305660 20665000 16342000 18782000 16291000 6495700 5134300 7556500 13040000 11433000 18363000 1359600 20983000 15686000 18974000 16182000 7256200 5992100 7336300 12335000 1 1 1 1 1 1 1 1 1 1 1 10471000 16936000 78968 17049000 11325000 8489700 10013000 6099800 4316700 7001500 11397000 9750000 15803000 953670 17257000 10831000 9123000 10049000 6349500 4892000 6800900 10775000 1 1 1 1 1 1 1 1 1 1 1 1012900000 740730000 272220000 2060 1997 1925 12454;12455;12456 14990;14991;14992 14991 3 AVGAYSK Unmodified 694.36499 0.36498987 43 CON__P15636 yes yes 0 0 0 0 By MS/MS 5 0 1 1 31.637 31.779 2 0.03159 6232 20211116_3444_TMUAki_TMT10x_S_F5 79.116 20.135 + 72815 128200 0 112500 78316 81327 75323 65976 96675 66481 96112 67798 119560 6081.5 115410 75016 84429 77221 67869 97396 64908 92733 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72815 128200 0 112500 78316 81327 75323 65976 96675 66481 96112 67798 119560 6081.5 115410 75016 84429 77221 67869 97396 64908 92733 1 1 0 1 1 1 1 1 1 1 1 1007700 0 1007700 2061 43 1926 12457 14993 14993 1 AVGDGILCNTYIDSYK Unmodified 1787.84 0.84000047 1902 Q53EL6;Q53EL6-2 PDCD4 Programmed cell death protein 4 yes no 0 0 0 0 By MS/MS By MS/MS 6 0.707 1 2 1 2 2 68.927 69.015 2;3 1.3377E-21 21307 20211116_3434_TMUAki_TMT10x_P_F6 155.02 126.69 3308000 5528500 41230 5359700 4009100 6525200 3923000 3773600 3480300 3807100 4222000 3080400 5158000 322500 5497100 3844500 6513700 3970000 3976600 3586300 3716900 4049800 1 1 1 1 1 1 1 1 1 1 1 3308000 5528500 41230 5359700 4009100 6525200 3923000 3773600 3480300 3807100 4222000 3080400 5158000 322500 5497100 3844500 6513700 3970000 3976600 3586300 3716900 4049800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 440810000 440810000 0 2062 1902 1927 12458;12459;12460;12461 14994;14995;14996;14997 14995 4 AVGHPFVIQLGR Unmodified 1292.7353 0.73533988 153 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 48.574 48.498 3 2.4357E-15 14973 20211116_3429_TMUAki_TMT10x_P_F2 182.64 139.33 9299800 14501000 137380 16466000 13480000 14844000 9804800 12065000 9545100 10403000 12504000 8660100 13538000 957600 16635000 12841000 15160000 10130000 12358000 9826900 10229000 11970000 7 7 7 7 7 7 7 7 7 7 7 5295400 7953000 78748 8719800 9981600 11775000 6709500 6948600 5511000 5824500 6985300 4931100 7423900 578050 8887100 9493400 11698000 6939700 7274800 5711300 5734800 6692800 4 4 4 4 4 4 4 4 4 4 4 4004400 6548100 58637 7746500 3498100 3069100 3095300 5116700 4034100 4578500 5518300 3729000 6114500 379550 7748200 3347600 3461100 3189800 5082900 4115600 4493700 5277300 3 3 3 3 3 3 3 3 3 3 3 4983200000 2951600000 2031600000 2063 153 1928 12462;12463;12464;12465;12466;12467 14998;14999;15000;15001;15002;15003;15004 14999 7 AVGIWHCGSCMK Oxidation (M) 1420.605 0.60499569 1313 P61513 RPL37A 60S ribosomal protein L37a yes yes 0 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 38.141 38.098 3 0.00010675 9202 20211116_3428_TMUAki_TMT10x_P_F1 92.611 78.705 1006500 1732300 16147 2089000 2537000 1866400 1245500 1004200 1097900 977700 1567800 937280 1617700 119930 2102600 2401100 1895800 1326400 1063700 1140100 955960 1497900 2 2 2 2 2 2 2 2 2 2 2 499600 842700 7627.3 1024300 2123400 1483600 868340 491280 541470 459770 776820 465230 787010 71270 1039000 2004900 1460700 936300 548630 573510 450330 742090 1 1 1 1 1 1 1 1 1 1 1 506910 889550 8519.9 1064700 413610 382890 377200 512890 556430 517930 790990 472050 830700 48660 1063600 396190 435040 390070 515060 566560 505630 755780 1 1 1 1 1 1 1 1 1 1 1 111640000 78821000 32822000 2064 1313 1929 12468;12469 15005;15006 15005 1770 2 AVGKDNFTLIPEGTNGTEER Unmodified 2147.0495 0.049475973 1852 Q16555;Q16555-2 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 5 0.707 1 2 1 2 2 52.616 52.784 3 3.2293E-24 14958 20211116_3445_TMUAki_TMT10x_S_F6 161.04 146.08 6149700 12412000 645.76 8047500 11595000 19727000 9357000 23589000 23042000 18016000 13553000 5725700 11565000 552510 8692700 11059000 19463000 10032000 23622000 22506000 17825000 13368000 4 4 1 4 4 4 4 4 4 4 4 3359600 6593900 0 4469500 8633500 15706000 7456800 11823000 11864000 9644100 7075700 3128000 6144900 327600 4877700 8247000 15220000 7761700 12152000 11707000 9508700 6973900 2 2 0 2 2 2 2 2 2 2 2 2790000 5818200 645.76 3577900 2961000 4021000 1900100 11766000 11178000 8371700 6477500 2597700 5420600 224910 3814900 2811900 4243100 2270100 11471000 10799000 8316100 6394100 2 2 1 2 2 2 2 2 2 2 2 1786800000 849390000 937390000 2065 1852 1930 12470;12471;12472;12473 15007;15008;15009;15010 15010 4 AVGKDNFTLIPEGVNGIEER Unmodified 2157.1066 0.10659692 1691 Q14194-2;Q14194 CRMP1 Dihydropyrimidinase-related protein 1 yes no 0 0 0 1 By MS/MS 6 0 1 1 63.132 63.149 3 4.3781E-11 18846 20211116_3434_TMUAki_TMT10x_P_F6 116.43 91.109 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2066 1691 1931 12474 15011 15011 1 AVGNIVTGTDEQTQVVLNCDALSHFPALLTHPK Unmodified 3544.7984 0.79841701 106 O00629 KPNA4 Importin subunit alpha-3 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 77.152 77.22 4 1.0719E-06 27124 20211116_3446_TMUAki_TMT10x_S_F7 73.126 61.273 2971500 4927400 28381 4668000 3617000 4814100 3834300 3108600 2862900 3272200 4147200 2766900 4596900 281840 4782600 3475300 4856900 3847800 3251500 3000600 3189000 3960900 2 2 2 2 2 2 2 2 2 2 2 1749300 2827200 13103 2602300 1737000 3219700 2074800 2056400 1732000 1926100 2451100 1628900 2637200 157070 2679900 1674800 3215800 2076300 2145600 1802600 1886500 2342300 1 1 1 1 1 1 1 1 1 1 1 1222100 2100300 15278 2065700 1880000 1594400 1759400 1052200 1130900 1346100 1696000 1138000 1959700 124780 2102700 1800500 1641200 1771500 1106000 1198100 1302500 1618600 1 1 1 1 1 1 1 1 1 1 1 2694900000 1174800000 1520100000 2067 106 1932 12475;12476 15012;15013 15013 2 AVGPEITKTDLVPAFQNLMK Oxidation (M) 2187.1609 0.16094068 869 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 1 1 By MS/MS 1.5 0.5 1 1 2 71.828 71.695 4 0.0040545 24790 20211116_3439_TMUAki_TMT10x_S_F1 57.496 47.583 5460300 9307200 6818.2 8070500 7364700 6929300 6877500 8059300 8351500 7860800 7626500 5083800 8680000 448360 8303500 7047400 7154800 7047300 8131100 8406000 7685400 7379500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5460300 9307200 6818.2 8070500 7364700 6929300 6877500 8059300 8351500 7860800 7626500 5083800 8680000 448360 8303500 7047400 7154800 7047300 8131100 8406000 7685400 7379500 2 2 1 2 2 2 2 2 2 2 2 910700000 0 910700000 2068 869 1933 12477;12478 15014;15015 15014 1038 2 AVGSISSTAFDIR Unmodified 1322.683 0.68302954 312 O75153 CLUH Clustered mitochondria protein homolog yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 55.874 56.501 2 2.5764E-11 18496 20211116_3446_TMUAki_TMT10x_S_F7 146.11 97.467 6569700 10826000 57318 10998000 7582600 10026000 7026700 9230800 8127400 7208200 9196100 6117400 10102000 612280 11193000 7260000 10256000 7190600 9364800 8258000 7123200 8838100 2 2 2 2 2 2 2 2 2 2 2 3045700 5116000 53719 5229100 4315600 6819000 3907900 4105200 3871100 3187500 4276400 2836200 4774200 320360 5350400 4131000 6787700 3984200 4283300 3954200 3150800 4112700 1 1 1 1 1 1 1 1 1 1 1 3524000 5709700 3598.6 5768800 3267000 3207200 3118800 5125600 4256300 4020700 4919700 3281200 5328000 291920 5842600 3129100 3468400 3206500 5081500 4303800 3972300 4725300 1 1 1 1 1 1 1 1 1 1 1 886960000 466110000 420850000 2069 312 1934 12479;12480 15016;15017 15017 2 AVHADFFNDFEDLFDDDDIQ Unmodified 2386.9866 0.98660094 2320 Q8WXC6 MYEOV2 Myeloma-overexpressed gene 2 protein yes yes 0 0 0 0 By MS/MS 1 0 1 1 82.211 82.211 2 1.8125E-06 27202 20211116_3428_TMUAki_TMT10x_P_F1 92.925 87.432 416820 619700 6395.3 600030 380760 781090 451820 375630 434740 396520 574300 388150 578170 40013 616230 367270 775450 454060 403010 447980 386410 549680 1 1 1 1 1 1 1 1 1 1 1 416820 619700 6395.3 600030 380760 781090 451820 375630 434740 396520 574300 388150 578170 40013 616230 367270 775450 454060 403010 447980 386410 549680 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 144100000 144100000 0 2070 2320 1935 12481 15018 15018 1 AVHEDIVAVELLPK Unmodified 1531.861 0.86099391 3241 Q9Y2L1;Q9Y2L1-2 DIS3 Exosome complex exonuclease RRP44 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 62.965 62.522 3 0.034504 21203 20211116_3430_TMUAki_TMT10x_P_F3 45.654 33.385 4437500 7547500 27991 8632100 5089900 3508900 4318200 3012300 2475200 3211600 4884200 4132000 7046700 403130 8653000 4862700 3879500 4363500 3093800 2684200 3128400 4637000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4437500 7547500 27991 8632100 5089900 3508900 4318200 3012300 2475200 3211600 4884200 4132000 7046700 403130 8653000 4862700 3879500 4363500 3093800 2684200 3128400 4637000 1 1 1 1 1 1 1 1 1 1 1 204360000 0 204360000 2071 3241 1936 12482;12483 15019;15020 15019 2 AVHEQLAALSQAPVNKPK Unmodified 1900.053 0.053045209 1766 Q15059;Q15059-2 BRD3 Bromodomain-containing protein 3 yes no 0 0 0 1 By MS/MS 2 0 2 2 43.632 43.65 4;5 4.8457E-17 11666 20211116_3440_TMUAki_TMT10x_S_F2 141.13 120.48 1054700 1643400 8736.9 2183700 918020 783860 832390 1448000 1461500 1246300 1608300 982100 1535500 90675 2168600 878420 899810 868280 1432700 1464500 1225500 1546900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1054700 1643400 8736.9 2183700 918020 783860 832390 1448000 1461500 1246300 1608300 982100 1535500 90675 2168600 878420 899810 868280 1432700 1464500 1225500 1546900 2 2 1 2 2 2 2 2 2 2 2 79873000 0 79873000 2072 1766 1937 12484;12485 15021;15022 15021 2 AVIDLNNR Unmodified 913.49813 0.49812931 597 Q01081;P0DN76;Q01081-2;Q01081-4 U2AF1 Splicing factor U2AF 35 kDa subunit yes no 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 38.489 38.564 2 0.0014458 9133 20211116_3444_TMUAki_TMT10x_S_F5 121.74 67.853 3902400 5924400 55628 6528700 5821300 5818500 4255500 4239500 4199200 3749900 5131100 3633900 5530300 402260 6607000 5545800 5935800 4396700 4375400 4307500 3682500 4921000 4 4 4 4 4 4 4 4 4 4 4 2250600 3414900 33801 3778900 4256700 4510700 2744300 2442100 2436700 2198800 2995900 2095800 3187900 246190 3840300 4045600 4503600 2853200 2580100 2512200 2157500 2872700 2 2 2 2 2 2 2 2 2 2 2 1651800 2509400 21827 2749800 1564600 1307800 1511200 1797300 1762500 1551100 2135200 1538200 2342500 156070 2766700 1500200 1432200 1543400 1795300 1795300 1525000 2048200 2 2 2 2 2 2 2 2 2 2 2 423410000 278330000 145080000 2073 597 1938 12486;12487;12488;12489;12490 15023;15024;15025;15026 15026 4 AVIFCLSADKK Unmodified 1250.6693 0.66929373 1282 P60981;P60981-2 DSTN Destrin yes no 0 0 0 1 By MS/MS By MS/MS 2.6 0.49 2 3 2 3 56.56 56.333 3 1.2096E-11 19755 20211116_3441_TMUAki_TMT10x_S_F3 131.43 101.1 57286000 92674000 376920 89111000 94879000 109830000 67764000 63905000 48734000 54727000 69059000 53341000 86461000 5627200 91469000 90315000 109580000 69565000 67017000 51132000 53827000 65989000 6 6 6 6 6 6 6 6 6 6 6 47656000 75546000 306240 72059000 77479000 100970000 59038000 52452000 40177000 45097000 56191000 44374000 70479000 4654100 74191000 73846000 99988000 60265000 55558000 42267000 44348000 53710000 5 5 5 5 5 5 5 5 5 5 5 9630100 17128000 70681 17052000 17400000 8863300 8726000 11453000 8557000 9629400 12868000 8967100 15982000 973090 17279000 16470000 9592700 9299500 11459000 8865600 9479700 12280000 1 1 1 1 1 1 1 1 1 1 1 3316600000 2359000000 957550000 2074 1282 1939 12491;12492;12493;12494;12495 15027;15028;15029;15030;15031;15032;15033;15034 15034 8 AVIFDRFR Unmodified 1022.5661 0.56614929 924 P35232;P35232-2 PHB Prohibitin yes no 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 46.657 46.543 3 0.00023982 14240 20211116_3429_TMUAki_TMT10x_P_F2 153.04 105.97 5552100 8212600 0 9487800 9057100 9767600 5649100 6145900 5571400 5205700 6866200 5169200 7668000 459790 9593300 8595500 9852000 5905900 6403400 5717300 5122900 6583500 3 3 0 3 3 3 3 3 3 3 3 4632000 6776000 0 7768200 8099100 9082900 4914300 5048700 4621400 4326700 5656200 4312600 6326500 395960 7874400 7683400 9081300 5142300 5315200 4751000 4255500 5424300 2 2 0 2 2 2 2 2 2 2 2 920130 1436500 0 1719700 958000 684770 734740 1097200 950000 878920 1210000 856630 1341500 63833 1718900 912120 770700 763620 1088200 966270 867390 1159200 1 1 0 1 1 1 1 1 1 1 1 271250000 217950000 53302000 2075 924 1940 12496;12497;12498 15035;15036;15037 15035 3 AVIGIGIEEEDRK Unmodified 1427.762 0.76200815 395 O94906;O94906-2 PRPF6 Pre-mRNA-processing factor 6 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 1.12 2 2 2 2 5 3 47.86 47.831 3 9.3366E-26 13447 20211116_3431_TMUAki_TMT10x_P_F4 232.25 199.9 47259000 72874000 360020 73564000 60602000 62541000 48638000 54469000 50145000 47232000 64306000 44005000 68002000 4392700 74834000 57826000 64211000 50008000 55571000 51451000 46427000 61596000 10 10 7 10 10 10 10 10 10 10 10 22095000 31603000 162180 33820000 35243000 41209000 23830000 24874000 23625000 21846000 30207000 20573000 29497000 2137500 34456000 33514000 41158000 24762000 26024000 24277000 21461000 28936000 5 5 4 5 5 5 5 5 5 5 5 25164000 41271000 197850 39744000 25359000 21332000 24808000 29595000 26521000 25386000 34099000 23432000 38505000 2255100 40378000 24312000 23053000 25246000 29547000 27174000 24966000 32659000 5 5 3 5 5 5 5 5 5 5 5 3692600000 2129600000 1563000000 2076 395 1941 12499;12500;12501;12502;12503;12504;12505;12506 15038;15039;15040;15041;15042;15043;15044;15045;15046;15047;15048;15049 15042 12 AVIGMTAGATGAFVGTPAEVALIR Oxidation (M) 2288.2199 0.21985254 1502 Q02978;Q02978-2 SLC25A11 Mitochondrial 2-oxoglutarate/malate carrier protein yes no 0 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 75.095 75.057 3 6.111E-38 24169 20211116_3428_TMUAki_TMT10x_P_F1 187.57 175.79 7953900 13865000 95165 12676000 9093100 14198000 9423000 10297000 9217000 10122000 10908000 7406200 12933000 712630 13039000 8729600 14282000 9534500 10660000 9445700 9892800 10470000 5 5 3 5 5 5 5 5 5 5 5 4912400 8299200 76940 7526700 4950100 10684000 5727300 6023800 5744600 6226500 6562400 4574100 7741100 439930 7780300 4768000 10585000 5769400 6365800 5872400 6072700 6305200 3 3 2 3 3 3 3 3 3 3 3 3041600 5566100 18225 5149700 4143000 3513100 3695700 4272800 3472400 3895500 4345800 2832000 5192200 272700 5258500 3961600 3696900 3765100 4294600 3573300 3820100 4165200 2 2 1 2 2 2 2 2 2 2 2 1104400000 572670000 531680000 2077 1502 1942 12507;12508 15050;15051;15052;15053;15054 15051 2040 5 AVIHYRDDETMYVESK Oxidation (M) 1970.9044 0.90439164 168 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 0 0 1 1 By MS/MS By MS/MS 4.25 0.829 1 1 2 2 2 38.983 38.961 4 3.3383E-07 9966 20211116_3431_TMUAki_TMT10x_P_F4 104.41 99.866 3871100 5682100 8765.1 6619900 8258000 8320900 4665300 5863900 6701000 4928300 5647600 3604200 5305500 366560 6712600 7826800 8316600 4983100 6058000 6690600 4851800 5480600 4 4 2 4 4 4 4 4 4 4 4 2819900 4015600 0 4638700 7334200 7425200 3736800 4172800 4834100 3579600 4039700 2625400 3749300 273030 4729900 6940400 7319300 4012400 4389000 4841600 3520400 3921500 2 2 0 2 2 2 2 2 2 2 2 1051100 1666500 8765.1 1981300 923820 895700 928500 1691100 1866900 1348800 1607900 978760 1556200 93531 1982700 886450 997310 970620 1669000 1849000 1331400 1559100 2 2 2 2 2 2 2 2 2 2 2 481260000 348530000 132730000 2078 168 1943 12509;12510;12511;12512 15055;15056;15057;15058 15055 129 4 AVIHYRDDETMYVESK Unmodified 1954.9095 0.90947702 168 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 0 0 0 1 By MS/MS 5 0 1 1 42.409 42.535 4 0.0067679 10562 20211116_3444_TMUAki_TMT10x_S_F5 58.83 42.887 1477500 2620800 16614 2947800 1566700 1389000 1361400 1645000 1479300 1413700 2105000 1375800 2446700 139230 2960800 1498000 1516900 1395300 1652700 1522000 1390200 2011300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1477500 2620800 16614 2947800 1566700 1389000 1361400 1645000 1479300 1413700 2105000 1375800 2446700 139230 2960800 1498000 1516900 1395300 1652700 1522000 1390200 2011300 1 1 1 1 1 1 1 1 1 1 1 56169000 0 56169000 2079 168 1943 12513 15059 15059 1 AVIQGLETLRGEHR Unmodified 1577.8638 0.86378788 2770 Q9H0B6;Q9H0B6-2 KLC2 Kinesin light chain 2 yes no 0 0 0 1 By matching By MS/MS 7.33 0.471 2 1 1 2 43.526 43.873 4 0.00010939 11152 20211116_3447_TMUAki_TMT10x_S_F8 93.348 76.435 1516700 2580600 16477 2643400 1876500 1412500 1804400 1569100 1479000 1367100 1999900 1412300 2408200 146140 2673800 1798400 1518400 1823900 1581400 1537300 1343500 1913100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1516700 2580600 16477 2643400 1876500 1412500 1804400 1569100 1479000 1367100 1999900 1412300 2408200 146140 2673800 1798400 1518400 1823900 1581400 1537300 1343500 1913100 2 2 2 2 2 2 2 2 2 2 2 313250000 206320000 106930000 2080 2770 1944 12514;12515;12516 15060;15061 15061 2 AVIQVSQIVAR Unmodified 1182.7085 0.70845643 2084 Q7Z4W1 DCXR L-xylulose reductase yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 53.609 53.465 2 3.655E-08 16997 20211116_3429_TMUAki_TMT10x_P_F2 150.66 121.5 9589000 16064000 198350 16409000 14578000 16863000 11413000 12706000 11547000 11405000 13176000 8929800 14990000 1049700 16722000 13910000 17058000 11746000 13089000 11799000 11192000 12660000 3 3 3 3 3 3 3 3 3 3 3 6436400 10415000 161510 10443000 11017000 14076000 8478400 8194600 7630500 7731500 8382800 5994200 9718800 748310 10706000 10510000 13983000 8706500 8614700 7826500 7570100 8063300 2 2 2 2 2 2 2 2 2 2 2 3152600 5648200 36839 5966400 3560500 2787400 2934400 4511400 3916400 3673200 4793400 2935600 5271500 301420 6016700 3400500 3074500 3039600 4474800 3972400 3622000 4596900 1 1 1 1 1 1 1 1 1 1 1 818420000 610050000 208380000 2081 2084 1945 12517;12518;12519 15062;15063;15064 15063 3 AVITSLLDQIPEMFADTR Oxidation (M) 2035.0296 0.029592154 1214 P53992 SEC24C Protein transport protein Sec24C yes yes 0 0 1 0 By MS/MS 7.5 0.5 1 1 2 80.715 80.731 3 0.00018524 28559 20211116_3446_TMUAki_TMT10x_S_F7 67.995 45.192 1267500 2218800 36948 2009700 1826500 1553100 1861500 1410300 1305500 1523000 1757100 1180400 2069600 147350 2058200 1754500 1607200 1869200 1444500 1368500 1482800 1681000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1267500 2218800 36948 2009700 1826500 1553100 1861500 1410300 1305500 1523000 1757100 1180400 2069600 147350 2058200 1754500 1607200 1869200 1444500 1368500 1482800 1681000 1 1 1 1 1 1 1 1 1 1 1 1009500000 0 1009500000 2082 1214 1946 12520;12521 15065 15065 1626 1 AVIVMCHPLK Oxidation (M) 1182.6253 0.62532043 3409 yes no 0 0 1 0 By MS/MS By MS/MS 2.75 3.03 3 1 3 1 77.684 77.673 2 0.058342 25456 20211116_3436_TMUAki_TMT10x_P_F8 57.559 11.431 + 36223000 57610000 6742.6 60902000 30521000 44043000 36661000 21087000 21796000 25213000 36699000 33726000 53769000 2727400 61646000 29406000 45392000 36406000 22722000 23353000 24454000 34941000 4 4 1 4 4 4 4 4 4 4 4 28358000 45171000 6742.6 47367000 22378000 36873000 26975000 16152000 16957000 19845000 28008000 26403000 42158000 2095200 48010000 21562000 37746000 26811000 17579000 18082000 19230000 26676000 3 3 1 3 3 3 3 3 3 3 3 7865500 12439000 0 13535000 8142500 7169800 9686600 4934600 4839000 5367900 8690500 7323400 11611000 632210 13636000 7844600 7646600 9594700 5143000 5271600 5224700 8264100 1 1 0 1 1 1 1 1 1 1 1 2872000000 2586400000 285630000 2083 3409 1947 12522;12523;12524;12525 15066;15067 15067 3328 2 AVIYNPATQADWTAK Unmodified 1647.8257 0.82567103 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS 8 0 1 1 62.052 62.056 3 0.0016048 18483 20211116_3447_TMUAki_TMT10x_S_F8 62.69 39.773 3389800 5672300 12437 5856500 3515300 3257500 3397400 3467700 3175900 3400100 4140400 3156300 5293500 294390 5922700 3368400 3483600 3445400 3513100 3274800 3323500 3964200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3389800 5672300 12437 5856500 3515300 3257500 3397400 3467700 3175900 3400100 4140400 3156300 5293500 294390 5922700 3368400 3483600 3445400 3513100 3274800 3323500 3964200 1 1 1 1 1 1 1 1 1 1 1 282190000 0 282190000 2084 935 1948 12526 15068 15068 1 AVKEEGFPIRPHYFWPLLVGR Unmodified 2510.3587 0.3586697 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 2 By MS/MS 6 0 1 1 69.337 69.253 5 7.6873E-14 21748 20211116_3445_TMUAki_TMT10x_S_F6 130.73 118.88 6846400 10973000 0 11089000 6867000 5245600 7604200 4316300 3282800 4156500 6463000 6374200 10240000 514280 11217000 6599400 5683400 7541000 4430600 3641600 4066000 6136200 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6846400 10973000 0 11089000 6867000 5245600 7604200 4316300 3282800 4156500 6463000 6374200 10240000 514280 11217000 6599400 5683400 7541000 4430600 3641600 4066000 6136200 2 2 0 2 2 2 2 2 2 2 2 917600000 0 917600000 2085 1018 1949 12527 15069;15070 15069 2 AVLAESYER Unmodified 1036.5189 0.51892433 758 P21399 ACO1 Cytoplasmic aconitate hydratase yes yes 0 0 0 0 By MS/MS 4 0 1 1 36.25 36.382 2 0.0003002 9360 20211116_3442_TMUAki_TMT10x_S_F4 94.114 60.472 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2086 758 1950 12528 15071 15071 1 AVLALGGSLAGSAAEASHLVTDR Unmodified 2165.144 0.14404506 1720 Q14676;Q14676-2;Q14676-3;Q14676-4 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 76.286 76.296 3 3.3134E-21 24861 20211116_3436_TMUAki_TMT10x_P_F8 154.84 136.48 4592400 7104500 151980 6920700 4451000 9581700 5823200 4709200 4884700 6117300 5409300 4277100 6628600 520390 7113000 4311600 9487600 5805900 5076000 5029000 5916500 5202000 2 2 2 2 2 2 2 2 2 2 2 4592400 7104500 151980 6920700 4451000 9581700 5823200 4709200 4884700 6117300 5409300 4277100 6628600 520390 7113000 4311600 9487600 5805900 5076000 5029000 5916500 5202000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 799230000 799230000 0 2087 1720 1951 12529;12530 15072;15073;15074 15072 3 AVLCPPPVK Unmodified 979.55247 0.55247306 1390 P63000;P63000-2;P60763 RAC1;RAC3 Ras-related C3 botulinum toxin substrate 1;Ras-related C3 botulinum toxin substrate 3 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 3 1 2 47.272 47.19 2;3 8.7303E-06 12944 20211116_3436_TMUAki_TMT10x_P_F8 157.79 124.67 1744500 2873600 0 2902100 1734200 1610500 1625400 2504500 2088000 2237300 2405600 1624300 2681500 141340 2939300 1659900 1740400 1668700 2493300 2115200 2196100 2310700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1744500 2873600 0 2902100 1734200 1610500 1625400 2504500 2088000 2237300 2405600 1624300 2681500 141340 2939300 1659900 1740400 1668700 2493300 2115200 2196100 2310700 1 1 0 1 1 1 1 1 1 1 1 242050000 0 242050000 2088 1390 1952 12531;12532;12533 15075;15076;15077 15075 3 AVLCPPPVKK Unmodified 1107.6474 0.64743608 1390 P63000;P63000-2;P60763 RAC1;RAC3 Ras-related C3 botulinum toxin substrate 1;Ras-related C3 botulinum toxin substrate 3 yes no 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 42.463 42.398 3 0.0017738 12623 20211116_3429_TMUAki_TMT10x_P_F2 71.614 38.236 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2089 1390 1953 12534;12535;12536 15078;15079;15080 15078 3 AVLDALLEGK Unmodified 1027.5914 0.59136099 1057;1435 P78559;P78559-2;P46821 MAP1A;MAP1B Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2;Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 no no 0 0 0 0 By MS/MS By MS/MS 5.77 1.48 1 2 2 4 2 2 7 6 78.532 78.526 2;3 4.9622E-10 26348 20211116_3433_TMUAki_TMT10x_P_F5 195.7 125.43 92121000 149190000 823860 155630000 115060000 145710000 101790000 114620000 107620000 108200000 120660000 85778000 139230000 8427300 158160000 110020000 148360000 104130000 117920000 109690000 105940000 116000000 8 8 3 8 8 8 8 8 8 8 8 45723000 72111000 246080 75298000 63534000 100360000 58150000 55616000 54024000 52627000 58633000 42573000 67300000 4063600 76966000 60785000 99687000 59138000 58715000 55304000 51521000 56419000 5 5 1 5 5 5 5 5 5 5 5 46398000 77076000 577780 80328000 51527000 45356000 43644000 59007000 53598000 55571000 62030000 43205000 71932000 4363600 81195000 49237000 48670000 44991000 59202000 54390000 54415000 59578000 3 3 2 3 3 3 3 3 3 3 3 11907000000 6425000000 5482300000 2090 1435;1057 1954 12537;12538;12539;12540;12541;12542;12543;12544;12545;12546;12547;12548;12549 15081;15082;15083;15084;15085;15086;15087;15088;15089;15090 15082 10 AVLDGLDVLLAQEVRPR Unmodified 1863.0578 0.057796235 1430 P78395 PRAME Melanoma antigen preferentially expressed in tumors yes yes 0 0 0 1 By MS/MS By MS/MS 6.6 1.02 1 1 2 1 1 4 78.892 78.907 3 1.0899E-35 27810 20211116_3446_TMUAki_TMT10x_S_F7 200.77 177.97 8786200 14113000 0 12635000 8740600 11482000 9212500 6008300 5517700 6328200 9071500 8179800 13163000 607680 12977000 8384900 11645000 9205500 6394600 5901100 6167300 8640900 2 2 0 2 2 2 2 2 2 2 2 3933000 6173900 0 5486500 3229600 5906500 3713200 3145300 2975000 3412200 4236400 3661900 5758300 309580 5652000 3108400 5929200 3718300 3345300 3103600 3321600 4047600 1 1 0 1 1 1 1 1 1 1 1 4853200 7938900 0 7148700 5511000 5575400 5499300 2862900 2542700 2916000 4835100 4517900 7404900 298100 7325100 5276600 5715900 5487200 3049300 2797500 2845700 4593300 1 1 0 1 1 1 1 1 1 1 1 2762600000 759580000 2003000000 2091 1430 1955 12550;12551;12552;12553;12554 15091;15092 15092 2 AVLDLESERR Unmodified 1186.6306 0.63060004 1712 Q14527;Q14527-2 HLTF Helicase-like transcription factor yes no 0 0 0 1 By MS/MS 2 0 1 1 35.862 35.961 3 0.00099502 8561 20211116_3440_TMUAki_TMT10x_S_F2 84.882 62.878 230890 415660 0 409250 250970 211390 270210 248350 251410 235660 307570 214980 387830 19099 414990 241100 228380 272500 250260 258580 230680 294960 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 230890 415660 0 409250 250970 211390 270210 248350 251410 235660 307570 214980 387830 19099 414990 241100 228380 272500 250260 258580 230680 294960 1 1 0 1 1 1 1 1 1 1 1 10121000 0 10121000 2092 1712 1956 12555 15093 15093 1 AVLDTPK Unmodified 742.4225 0.42250475 3400 yes no 0 0 0 0 By MS/MS 6 0 1 1 41.1 41.264 2 0.0066894 10296 20211116_3445_TMUAki_TMT10x_S_F6 111.28 5.8877 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2093 3400 1957 12556 15094 15094 1 AVLENNLGAAVLR Unmodified 1338.7619 0.76194857 3036 Q9NZL9;Q9NZL9-2;Q9NZL9-3;Q9NZL9-4 MAT2B Methionine adenosyltransferase 2 subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 58.474 58.812 2 1.8411E-11 18902 20211116_3435_TMUAki_TMT10x_P_F7 150.21 130.36 34025000 59109000 1257400 62607000 40790000 51716000 37801000 44936000 42447000 42989000 45860000 31690000 55168000 4087500 63460000 39112000 53205000 38643000 45971000 43100000 42066000 44134000 5 5 5 5 5 5 5 5 5 5 5 14829000 24581000 653320 25181000 18747000 33344000 19716000 17895000 16726000 17350000 18917000 13812000 22939000 1893200 25768000 18040000 33118000 19856000 18957000 17224000 16968000 18180000 2 2 2 2 2 2 2 2 2 2 2 19196000 34528000 604060 37426000 22043000 18372000 18085000 27041000 25721000 25639000 26943000 17878000 32230000 2194300 37692000 21073000 20086000 18787000 27014000 25876000 25098000 25953000 3 3 3 3 3 3 3 3 3 3 3 1668900000 846670000 822190000 2094 3036 1958 12557;12558;12559;12560 15095;15096;15097;15098;15099 15096 5 AVLEQEETAAASR Unmodified 1373.6787 0.67867245 3239 Q9Y2J2;Q9Y2J2-2;Q9Y2J2-4 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 37.907 37.848 2 9.5303E-31 9023 20211116_3440_TMUAki_TMT10x_S_F2 256.71 223.17 1497000 2364000 3314.4 3285700 3629900 2972600 1896100 2297800 3383300 1795000 2650200 1393700 2209300 126540 3282200 3435100 3032400 2060000 2355200 3350900 1773800 2579200 4 4 1 4 4 4 4 4 4 4 4 874820 1338000 0 1849900 3111100 2530600 1407400 1290800 1911900 963370 1507900 814340 1250400 78588 1861300 2938600 2508200 1532300 1365100 1908600 954370 1467100 2 2 0 2 2 2 2 2 2 2 2 622200 1026000 3314.4 1435800 518730 441960 488740 1007000 1471400 831620 1142300 579310 958920 47949 1420900 496480 524240 527730 990080 1442200 819430 1112100 2 2 1 2 2 2 2 2 2 2 2 133070000 91584000 41481000 2095 3239 1959 12561;12562;12563;12564 15100;15101;15102;15103 15103 4 AVLFCLSDDKR Unmodified 1322.6653 0.66527099 3229 Q9Y281;Q9Y281-3 CFL2 Cofilin-2 yes no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 53.559 54.071 3 1.804E-15 15817 20211116_3436_TMUAki_TMT10x_P_F8 174.77 128.06 4709800 7140700 61196 7647100 4846100 3999700 3821100 6230100 5792700 5476200 6142600 4385700 6664900 449420 7711000 4624600 4349800 3990500 6199300 5819200 5379400 5914700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4709800 7140700 61196 7647100 4846100 3999700 3821100 6230100 5792700 5476200 6142600 4385700 6664900 449420 7711000 4624600 4349800 3990500 6199300 5819200 5379400 5914700 1 1 1 1 1 1 1 1 1 1 1 700080000 0 700080000 2096 3229 1960 12565;12566 15104;15105 15104 2 AVLFCLSEDK Unmodified 1180.5798 0.57981002 787 P23528 CFL1 Cofilin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.8 1.25 2 2 3 2 1 5 5 65.852 65.965 2;3 5.9094E-14 19947 20211116_3434_TMUAki_TMT10x_P_F6 224.24 164.99 98335000 148860000 306520 162140000 98696000 90745000 91333000 45647000 57455000 57651000 94743000 91551000 138950000 7144700 163410000 94384000 95835000 91979000 49046000 61256000 55810000 90241000 11 11 3 11 11 11 11 11 11 11 11 42225000 62889000 281760 65779000 46185000 55617000 39629000 20290000 24170000 25163000 40482000 39313000 58693000 3170900 66749000 44095000 56492000 40061000 22558000 25844000 24374000 38546000 6 6 2 6 6 6 6 6 6 6 6 56110000 85974000 24767 96363000 52511000 35127000 51704000 25357000 33285000 32488000 54261000 52239000 80261000 3973900 96656000 50289000 39343000 51917000 26488000 35412000 31436000 51694000 5 5 1 5 5 5 5 5 5 5 5 14509000000 6174200000 8334800000 2097 787 1961 12567;12568;12569;12570;12571;12572;12573;12574;12575;12576 15106;15107;15108;15109;15110;15111;15112;15113;15114;15115;15116 15108 11 AVLFCLSEDKK Unmodified 1308.6748 0.67477304 787 P23528 CFL1 Cofilin-1 yes yes 0 0 0 1 By MS/MS By MS/MS 5.93 2.46 2 1 1 2 4 5 8 7 59.395 59.594 2;3 1.337E-15 18775 20211116_3446_TMUAki_TMT10x_S_F7 217.47 118.13 406140000 609520000 5036300 686350000 656150000 694990000 445610000 483850000 452530000 434000000 545210000 378190000 569040000 40946000 694890000 624100000 702730000 463230000 501110000 463350000 425920000 523070000 21 21 17 21 21 21 21 21 21 21 21 264350000 389010000 2692800 433480000 497200000 556110000 305480000 320530000 302470000 291130000 350630000 246150000 363150000 26813000 440910000 472030000 553670000 319790000 336910000 309550000 285540000 336750000 11 11 8 11 11 11 11 11 11 11 11 141790000 220510000 2343500 252870000 158950000 138880000 140140000 163310000 150050000 142870000 194570000 132040000 205880000 14133000 253980000 152080000 149060000 143440000 164200000 153800000 140380000 186320000 10 10 9 10 10 10 10 10 10 10 10 71653000000 43018000000 28635000000 2098 787 1962 12577;12578;12579;12580;12581;12582;12583;12584;12585;12586;12587;12588;12589;12590;12591 15117;15118;15119;15120;15121;15122;15123;15124;15125;15126;15127;15128;15129;15130;15131;15132;15133;15134;15135;15136;15137;15138 15135 22 AVLGDDEITREPR Unmodified 1469.7474 0.74742071 1579 Q12959;Q12959-2;Q12959-9;Q12959-5;Q12959-8;Q12959-3;Q12959-6;Q12959-4;Q12959-7 DLG1 Disks large homolog 1 yes no 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 36.556 36.477 3 0.0020717 11935 20211116_3441_TMUAki_TMT10x_S_F3 69.345 44.92 835000 1367500 4000.2 1313500 766080 702910 774180 1021700 1067200 910060 1135800 777470 1275800 68498 1334600 734770 760900 793940 1019300 1075300 893410 1093500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 835000 1367500 4000.2 1313500 766080 702910 774180 1021700 1067200 910060 1135800 777470 1275800 68498 1334600 734770 760900 793940 1019300 1075300 893410 1093500 2 2 1 2 2 2 2 2 2 2 2 39706000 0 39706000 2099 1579 1963 12592;12593 15139;15140 15140 2 AVLGEVK Unmodified 714.42759 0.42759012 821 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 By MS/MS By MS/MS 4.29 1.03 2 2 2 1 3 4 42.067 42.102 2 0.0031485 11223 20211116_3431_TMUAki_TMT10x_P_F4 119.89 9.5244 19680000 33268000 95939 31599000 34274000 36597000 23360000 23632000 25105000 21728000 26820000 18324000 31037000 1828700 32429000 32589000 36683000 24320000 24625000 25524000 21299000 25819000 7 7 5 7 7 7 7 7 7 7 7 13971000 22978000 64744 22140000 28217000 32000000 18230000 16469000 17595000 15593000 18643000 13008000 21438000 1328900 22793000 26803000 31643000 18994000 17502000 17965000 15265000 17952000 4 4 3 4 4 4 4 4 4 4 4 5708200 10291000 31195 9459100 6057600 4596100 5130700 7163400 7510000 6135500 8176800 5315100 9599100 499710 9635900 5786500 5039800 5326400 7122900 7559700 6034600 7867300 3 3 2 3 3 3 3 3 3 3 3 785440000 433510000 351930000 2100 821 1964 12594;12595;12596;12597;12598;12599;12600 15141;15142;15143;15144;15145;15146;15147;15148 15142 8 AVLGEVVLYSGARPLSHQPGPEAPALPK Unmodified 2852.5549 0.55486291 820 P26640 VARS Valine--tRNA ligase yes yes 0 0 0 1 By MS/MS By MS/MS 2.67 2.43 2 3 1 2 4 64.396 64.221 4;5 1.0466E-17 19753 20211116_3428_TMUAki_TMT10x_P_F1 125.82 114.17 63604000 108820000 699310 99514000 73885000 94039000 77437000 70870000 63469000 70847000 80867000 59224000 101510000 5276700 102100000 70952000 95618000 77930000 73224000 65797000 69194000 77471000 15 15 9 15 15 15 15 15 15 15 15 27472000 44064000 240300 40475000 29092000 54212000 34728000 29765000 26111000 27954000 31892000 25579000 41103000 2341000 41750000 28039000 53831000 34664000 31443000 27146000 27376000 30586000 5 5 3 5 5 5 5 5 5 5 5 36132000 64760000 459010 59039000 44793000 39827000 42710000 41105000 37358000 42893000 48975000 33645000 60406000 2935700 60346000 42913000 41787000 43265000 41782000 38651000 41818000 46884000 10 10 6 10 10 10 10 10 10 10 10 13049000000 7049200000 6000200000 2101 820 1965 12601;12602;12603;12604;12605;12606 15149;15150;15151;15152;15153;15154;15155;15156;15157;15158;15159;15160;15161;15162;15163 15149 15 AVLHVALR Unmodified 877.54977 0.54977095 522;55 CON__Q3ZBD7;P06744;P06744-2 GPI Glucose-6-phosphate isomerase no no 0 0 0 0 By MS/MS By MS/MS 5.1 2.49 2 3 2 1 3 1 4 5 13 8 35.899 35.866 2;3 0.00017859 10156 20211116_3429_TMUAki_TMT10x_P_F2 162.07 123.28 + 2194800 3825200 51714 4054900 3304000 3314000 2661500 2650400 2762300 2614800 2820700 2044000 3570200 245700 4109400 3155000 3406800 2736400 2727100 2807800 2555200 2719200 10 10 10 10 10 10 10 10 10 10 10 936120 1544400 31137 1698900 1748100 2058800 1196000 1092800 1170100 1201400 1113300 871860 1441700 118000 1727700 1664100 2053500 1241200 1163100 1189500 1168900 1075700 6 6 6 6 6 6 6 6 6 6 6 1258700 2280800 20576 2356000 1555900 1255100 1465500 1557500 1592200 1413400 1707400 1172100 2128500 127690 2381700 1490900 1353300 1495200 1564000 1618300 1386300 1643500 4 4 4 4 4 4 4 4 4 4 4 506180000 318930000 187250000 2102 55;522 1966 12607;12608;12609;12610;12611;12612;12613;12614;12615;12616;12617;12618;12619;12620;12621;12622;12623;12624;12625;12626;12627 15164;15165;15166;15167;15168;15169;15170;15171;15172;15173;15174;15175;15176;15177;15178;15179;15180;15181;15182;15183;15184 15165 21 AVLIAGQPGTGK Unmodified 1110.6397 0.63970816 3221 Q9Y230;Q9Y230-2 RUVBL2 RuvB-like 2 yes no 0 0 0 0 By MS/MS By MS/MS 6.6 2.8 1 4 2 3 45.333 45.32 2;3 6.3869E-24 12245 20211116_3436_TMUAki_TMT10x_P_F8 243.65 169.32 6789800 11327000 135270 11696000 9016800 9153500 7804700 8528900 8472800 7865800 9331700 6322800 10571000 693250 11867000 8621700 9467800 8000700 8683200 8620900 7709500 8975300 6 6 4 6 6 6 6 6 6 6 6 2421500 3953800 36493 4263300 4413200 4926200 3171000 2835700 2799400 2684700 3202400 2255000 3690500 262670 4337300 4202600 4930600 3270000 2984100 2878500 2628200 3076800 2 2 2 2 2 2 2 2 2 2 2 4368300 7373400 98774 7432300 4603500 4227400 4633600 5693100 5673400 5181200 6129300 4067800 6880400 430580 7530100 4419100 4537200 4730700 5699100 5742400 5081300 5898600 4 4 2 4 4 4 4 4 4 4 4 444800000 197370000 247420000 2103 3221 1967 12628;12629;12630;12631;12632 15185;15186;15187;15188;15189;15190 15185 6 AVLLAGPPGTGK Unmodified 1079.6339 0.63389451 3225 Q9Y265;Q9Y265-2 RUVBL1 RuvB-like 1 yes no 0 0 0 0 By MS/MS By MS/MS 1.2 0.4 4 1 1 4 52.587 52.343 2;3 3.4519E-15 15264 20211116_3440_TMUAki_TMT10x_S_F2 190.88 156.8 3203000 5249900 14894 5676800 3133700 2830900 3077400 4253500 4205200 3978400 4714200 2982400 4900400 267590 5718600 3003600 3091500 3159400 4244600 4246800 3896900 4531800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3203000 5249900 14894 5676800 3133700 2830900 3077400 4253500 4205200 3978400 4714200 2982400 4900400 267590 5718600 3003600 3091500 3159400 4244600 4246800 3896900 4531800 2 2 1 2 2 2 2 2 2 2 2 471290000 0 471290000 2104 3225 1968 12633;12634;12635;12636;12637 15191;15192;15193;15194 15194 4 AVLLDLEPR Unmodified 1024.5917 0.59169534 778 P23258;Q9NRH3 TUBG1;TUBG2 Tubulin gamma-1 chain;Tubulin gamma-2 chain yes no 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 61.855 61.845 2 0.00075734 19712 20211116_3442_TMUAki_TMT10x_S_F4 112.84 59.675 18688000 29991000 179890 31656000 23781000 27509000 20004000 21647000 19366000 19412000 23554000 17402000 27991000 1780800 32114000 22717000 28148000 20468000 22238000 19878000 19051000 22592000 4 4 3 4 4 4 4 4 4 4 4 9947100 15348000 27491 16768000 12705000 19250000 11642000 11879000 10319000 10192000 12165000 9261900 14327000 881380 17043000 12157000 19292000 11824000 12400000 10621000 10024000 11678000 2 2 1 2 2 2 2 2 2 2 2 8741400 14643000 152400 14888000 11075000 8258300 8361500 9767300 9046600 9219400 11389000 8140200 13664000 899440 15072000 10561000 8855800 8644500 9838200 9256500 9026700 10914000 2 2 2 2 2 2 2 2 2 2 2 1517300000 997510000 519780000 2105 778 1969 12638;12639;12640;12641;12642 15195;15196;15197;15198 15197 4 AVLLGPPGAGK Unmodified 978.58622 0.58621603 1228 P54819;P54819-5;P54819-2;P54819-3 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 3 2.92 4 2 2 4 4 51.19 51.089 2;3 2.588E-14 16039 20211116_3429_TMUAki_TMT10x_P_F2 159.04 111.96 26992000 49585000 245360 37894000 43405000 44782000 33198000 38051000 32601000 37462000 40921000 25133000 46224000 2621600 39587000 41372000 45045000 34190000 39010000 33487000 36612000 39217000 8 8 5 8 8 8 8 8 8 8 8 9410100 16476000 70207 13083000 21703000 26331000 17445000 13184000 11052000 12520000 14144000 8762000 15361000 989290 13784000 20705000 25712000 17720000 14049000 11633000 12255000 13549000 3 3 1 3 3 3 3 3 3 3 3 17582000 33109000 175150 24812000 21702000 18451000 15754000 24867000 21549000 24941000 26776000 16371000 30863000 1632300 25803000 20667000 19333000 16470000 24962000 21855000 24356000 25668000 5 5 4 5 5 5 5 5 5 5 5 1963600000 1133300000 830260000 2106 1228 1970 12643;12644;12645;12646;12647;12648;12649;12650 15199;15200;15201;15202;15203;15204;15205;15206;15207 15201 9 AVLMEKPDVVVGTPSR Oxidation (M) 1712.9131 0.91310583 3015 Q9NY93;Q9NY93-2 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 0 0 1 1 By MS/MS 7 0 1 1 46.502 46.993 3 0.0060778 14611 20211116_3446_TMUAki_TMT10x_S_F7 61.127 44.903 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2107 3015 1971 12651 15208 15208 3071 1 AVLNPLCQVDYR Unmodified 1446.7289 0.72893388 1808;1809 Q15436;Q15437 SEC23A;SEC23B Protein transport protein Sec23A;Protein transport protein Sec23B no no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 58.886 59.299 2 7.5922E-12 19645 20211116_3446_TMUAki_TMT10x_S_F7 171.87 152.11 14312000 25586000 72821 25254000 19004000 20748000 14383000 20594000 20210000 19235000 20856000 13327000 23873000 1318600 25719000 18111000 21412000 15011000 20906000 20328000 18842000 20099000 4 4 3 4 4 4 4 4 4 4 4 5370000 8360600 0 8889200 7678000 11501000 5570100 6888400 6891900 7030800 7182200 5000000 7803300 475990 9070100 7308900 11452000 5801200 7240700 6963800 6860800 6919400 1 1 0 1 1 1 1 1 1 1 1 8942300 17225000 72821 16364000 11326000 9247300 8812400 13706000 13318000 12204000 13673000 8326700 16070000 842630 16649000 10802000 9959700 9209800 13665000 13364000 11981000 13179000 3 3 3 3 3 3 3 3 3 3 3 1960700000 1098500000 862290000 2108 1808;1809 1972 12652;12653;12654;12655 15209;15210;15211;15212;15213 15211 5 AVLQALEVLPVAPPPEPR Unmodified 1895.088 0.088033731 2014 Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 yes yes 0 0 0 0 By MS/MS 8 0 1 1 78.992 78.997 3 0.0025054 25987 20211116_3436_TMUAki_TMT10x_P_F8 62.765 37.974 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2109 2014 1973 12656 15214 15214 1 AVLQEEQANLWFSK Unmodified 1661.8413 0.8413211 2164 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 0 0 0 0 By MS/MS 6 0 1 1 73.503 73.429 3 0.01872 23448 20211116_3445_TMUAki_TMT10x_S_F6 50.843 34.952 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2110 2164 1974 12657 15215 15215 1 AVLSAEQLRDEEVHAGLGELLR Unmodified 2404.271 0.27103649 1136 P50454 SERPINH1 Serpin H1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.67 1.11 1 2 1 2 3 3 66.482 66.302 4 1.2311E-26 21504 20211116_3442_TMUAki_TMT10x_S_F4 170.65 151.16 64991000 104130000 570360 86726000 78282000 145680000 82570000 89716000 80074000 83134000 86359000 60510000 97098000 5201200 90586000 75144000 143510000 83453000 93844000 81794000 81464000 83113000 5 5 3 5 5 5 5 5 5 5 5 55891000 87991000 520270 73418000 66390000 133630000 74509000 76384000 67077000 70463000 72263000 52038000 82051000 4451000 76829000 63841000 131130000 74923000 80373000 68749000 69062000 69549000 3 3 2 3 3 3 3 3 3 3 3 9099300 16137000 50090 13308000 11891000 12045000 8060900 13332000 12997000 12671000 14096000 8472000 15047000 750200 13757000 11303000 12378000 8529600 13471000 13045000 12403000 13563000 2 2 1 2 2 2 2 2 2 2 2 5201200000 2407000000 2794200000 2111 1136 1975 12658;12659;12660;12661;12662;12663 15216;15217;15218 15218 3 AVLTFALDSVERK Unmodified 1447.8035 0.80347903 2908 Q9NQT4 EXOSC5 Exosome complex component RRP46 yes yes 0 0 0 1 By MS/MS 1 0 1 1 71.145 71.145 3 1.7622E-14 22698 20211116_3428_TMUAki_TMT10x_P_F1 162.31 141.93 2547100 3754200 0 4309900 2638800 4701700 2953700 2574900 2750300 2581700 3201600 2371600 3505200 208910 4363400 2537900 4717900 2973300 2725500 2822800 2521100 3074500 1 1 0 1 1 1 1 1 1 1 1 2547100 3754200 0 4309900 2638800 4701700 2953700 2574900 2750300 2581700 3201600 2371600 3505200 208910 4363400 2537900 4717900 2973300 2725500 2822800 2521100 3074500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 221790000 221790000 0 2112 2908 1976 12664 15219 15219 1 AVLVDLEPGTMDSVR Oxidation (M) 1616.808 0.80797206 1418;488;1889 P68371;Q3ZCM7;P04350 TUBB4B;TUBB8;TUBB4A Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-4A chain no no 0 0 1 0 By MS/MS By MS/MS 2.78 1.31 4 4 4 4 2 9 9 59.201 59.041 2;3 4.6727E-14 20747 20211116_3441_TMUAki_TMT10x_S_F3 153.88 134.09 50972000 85826000 289600 83190000 64809000 89629000 57657000 79812000 81392000 73732000 73514000 47460000 80075000 4345100 85150000 61957000 90691000 59593000 81461000 81484000 72261000 71160000 19 19 8 19 19 19 19 19 19 19 19 28514000 45984000 150740 44960000 39381000 65042000 35258000 42012000 41864000 38862000 38482000 26549000 42905000 2486600 46240000 37654000 64504000 36183000 43783000 42180000 38084000 37227000 10 10 4 10 10 10 10 10 10 10 10 22458000 39842000 138860 38229000 25428000 24587000 22399000 37801000 39528000 34870000 35032000 20911000 37171000 1858400 38910000 24303000 26186000 23409000 37678000 39304000 34177000 33933000 9 9 4 9 9 9 9 9 9 9 9 38683000000 20188000000 18495000000 2113 1418;1889;488 1977 12665;12666;12667;12668;12669;12670;12671;12672;12673;12674;12675;12676;12677;12678;12679;12680;12681;12682 15220;15221;15222;15223;15224;15225;15226;15227;15228;15229;15230;15231;15232;15233;15234;15235;15236;15237;15238;15239 15236 379 20 AVLVDLEPGTMDSVR Unmodified 1600.8131 0.81305744 1418;488;1889 P68371;Q3ZCM7;P04350 TUBB4B;TUBB8;TUBB4A Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-4A chain no no 0 0 0 0 By MS/MS By MS/MS 3.22 1.31 2 4 4 4 4 9 9 66.91 66.737 2;3 9.7533E-61 22410 20211116_3429_TMUAki_TMT10x_P_F2 303.36 244.12 92025000 146130000 897720 157810000 105230000 110940000 106180000 65225000 53863000 69822000 103540000 85687000 136400000 8156600 159470000 100940000 114880000 106040000 68761000 58848000 68002000 98342000 25 25 17 25 25 25 25 25 25 25 25 47663000 71802000 492470 79373000 53932000 70516000 57360000 30580000 25529000 33414000 50726000 44380000 67027000 4139900 80307000 51805000 71486000 57018000 33192000 28258000 32517000 48154000 11 11 7 11 11 11 11 11 11 11 11 44362000 74332000 405250 78437000 51295000 40426000 48824000 34645000 28334000 36408000 52813000 41308000 69375000 4016700 79160000 49138000 43398000 49020000 35569000 30590000 35485000 50189000 14 14 10 14 14 14 14 14 14 14 14 21268000000 10662000000 10606000000 2114 1418;1889;488 1977 12683;12684;12685;12686;12687;12688;12689;12690;12691;12692;12693;12694;12695;12696;12697;12698;12699;12700 15240;15241;15242;15243;15244;15245;15246;15247;15248;15249;15250;15251;15252;15253;15254;15255;15256;15257;15258;15259;15260;15261;15262;15263;15264;15265;15266 15241 27 AVMHFLVNHVK Oxidation (M) 1309.6965 0.69651154 87 O00429;O00429-2;O00429-4;O00429-3;O00429-5;O00429-9;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 1 0 By MS/MS By MS/MS 2 0 2 1 1 37.849 37.774 4 7.0525E-07 10755 20211116_3429_TMUAki_TMT10x_P_F2 131.5 113.77 1276500 1776400 33225 2177000 2549600 2504300 1475200 1677200 1925500 1500900 1851800 1188800 1659100 154630 2197500 2419700 2512500 1566500 1741700 1936600 1473100 1788600 3 3 3 3 3 3 3 3 3 3 3 1134100 1592600 31505 1953400 2436200 2368400 1341200 1497100 1727600 1347800 1653200 1056100 1487400 141620 1973500 2310300 2367600 1429600 1561700 1738000 1322400 1597100 2 2 2 2 2 2 2 2 2 2 2 142440 183810 1720 223570 113400 135940 134040 180020 197930 153130 198540 132640 171660 13006 223960 109360 144890 136860 180000 198580 150660 191510 1 1 1 1 1 1 1 1 1 1 1 42159000 32965000 9193400 2115 87 1978 12701;12702 15267;15268;15269 15268 64 3 AVNPFLADVDKLK Unmodified 1428.7977 0.79766537 1672 Q14008;Q14008-2;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 1 By MS/MS 8 0 1 1 68.336 68.215 3 0.00012134 21031 20211116_3447_TMUAki_TMT10x_S_F8 85.006 61.828 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2116 1672 1979 12703 15270 15270 1 AVNSATGVPTV Unmodified 1014.5346 0.53457439 634 P11940;P11940-2;Q9H361 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 yes no 0 0 0 0 By MS/MS 3 0 1 1 48.026 48.002 2 9.8968E-05 15188 20211116_3430_TMUAki_TMT10x_P_F3 96.948 73.152 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2117 634 1980 12704 15271 15271 1 AVNTQALSGAGILR Unmodified 1369.7678 0.76776223 286 O60749;O60749-2 SNX2 Sorting nexin-2 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 2 1 1 2 53.368 53.223 2 2.3305E-37 15332 20211116_3428_TMUAki_TMT10x_P_F1 250.51 205.17 4082000 6767600 24442 7255900 6353800 7667600 4554200 6978700 7405500 5816800 6050300 3800800 6316700 387220 7373900 6048200 7770400 4801900 7095400 7361000 5728900 5878500 2 2 1 2 2 2 2 2 2 2 2 2166900 3446000 24442 3820000 4766000 6073300 3306900 3623400 3985300 3205200 3104500 2017800 3216900 238830 3904300 4534700 5993000 3451600 3795200 3993400 3147600 3022100 1 1 1 1 1 1 1 1 1 1 1 1915000 3321600 0 3435900 1587800 1594300 1247300 3355200 3420200 2611600 2945800 1783000 3099800 148380 3469600 1513500 1777400 1350300 3300200 3367500 2581200 2856400 1 1 0 1 1 1 1 1 1 1 1 650630000 389220000 261410000 2118 286 1981 12705;12706;12707 15272;15273;15274 15272 3 AVNVYSTSVTSDNLSR Acetyl (Protein N-term) 1753.8483 0.84825697 1824 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 1 0 0 0 By MS/MS By MS/MS 3.33 0.745 1 2 3 3 3 56.817 56.598 2 1.2856E-53 19779 20211116_3441_TMUAki_TMT10x_S_F3 234.61 217.38 4803800 7445100 68443 7871100 5326600 6489200 4618400 5991500 5284100 5408200 6254600 4473200 6948700 455170 7979100 5092800 6684800 4742200 6099400 5381000 5305900 6003600 4 4 3 4 4 4 4 4 4 4 4 2599100 3657300 9669.5 3412300 3257100 4570300 2743500 3032200 2308700 2723400 3057700 2420000 3411700 219500 3515700 3109800 4549900 2796300 3151300 2394300 2672500 2926500 2 2 1 2 2 2 2 2 2 2 2 2204700 3787800 58773 4458800 2069500 1918900 1874800 2959300 2975400 2684700 3196900 2053300 3536900 235670 4463300 1983000 2134900 1946000 2948100 2986700 2633400 3077100 2 2 2 2 2 2 2 2 2 2 2 2817100000 1106900000 1710200000 2119 1824 1982 12708;12709;12710;12711;12712;12713 15275;15276;15277;15278;15279;15280;15281 15280 7 AVPEGFVIPR Unmodified 1083.6077 0.60767975 1031 P43490 NAMPT Nicotinamide phosphoribosyltransferase yes yes 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 56.126 56.345 2 0.0013693 16363 20211116_3445_TMUAki_TMT10x_S_F6 90.761 55.661 34222000 55282000 125990 58739000 44431000 48305000 38757000 44498000 42532000 41873000 48022000 31864000 51597000 2905600 59524000 42455000 49768000 39727000 45356000 43299000 41004000 46155000 7 7 5 7 7 7 7 7 7 7 7 11860000 19400000 63950 20069000 21077000 28543000 17680000 15945000 15054000 14686000 16350000 11043000 18105000 1078400 20553000 20122000 28272000 18030000 16809000 15476000 14395000 15732000 3 3 2 3 3 3 3 3 3 3 3 22362000 35882000 62036 38670000 23354000 19762000 21077000 28554000 27478000 27187000 31672000 20821000 33492000 1827200 38971000 22333000 21496000 21697000 28547000 27823000 26609000 30423000 4 4 3 4 4 4 4 4 4 4 4 3311300000 1663200000 1648100000 2120 1031 1983 12714;12715;12716;12717;12718;12719 15282;15283;15284;15285;15286;15287;15288;15289;15290 15288 9 AVPETRPNHTIYINNLNEK Acetyl (Protein N-term) 2264.1549 0.1549441 567 P09012 SNRPA U1 small nuclear ribonucleoprotein A yes yes 1 0 0 1 By MS/MS By MS/MS 5.62 1.32 2 2 2 1 1 3 5 44.755 44.921 3 1.7126E-17 11394 20211116_3434_TMUAki_TMT10x_P_F6 67.644 46.29 14032000 24917000 179810 30870000 21872000 25449000 14658000 18975000 20896000 17982000 19998000 13067000 23272000 1427700 30991000 20801000 26115000 15438000 19589000 20953000 17603000 19319000 7 7 6 7 7 7 7 7 7 7 7 7605700 13386000 126590 16607000 17500000 20841000 11185000 10358000 10857000 9399700 10515000 7082600 12502000 887110 16778000 16629000 20735000 11666000 11031000 11047000 9219700 10154000 3 3 3 3 3 3 3 3 3 3 3 6426400 11531000 53222 14263000 4372500 4608100 3472100 8617100 10039000 8582500 9483000 5983900 10770000 540560 14213000 4172300 5380000 3772300 8558000 9906100 8383600 9165100 4 4 3 4 4 4 4 4 4 4 4 6450900000 3762700000 2688300000 2121 567 1984 12720;12721;12722;12723;12724;12725;12726;12727 15291;15292;15293;15294;15295;15296;15297 15293 7 AVPGAPELLER Unmodified 1150.6346 0.63462279 2472 Q96GD0 PDXP Pyridoxal phosphate phosphatase yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 51.681 51.72 2 1.3232E-07 17839 20211116_3441_TMUAki_TMT10x_S_F3 121.5 73 11311000 17962000 139890 21233000 16726000 17502000 12521000 14430000 13944000 13357000 15519000 10532000 16772000 1120300 21375000 15939000 17991000 12965000 14794000 14179000 13089000 14922000 4 4 3 4 4 4 4 4 4 4 4 5533800 8696400 14602 10187000 11246000 12731000 8189500 7077900 6867500 6509600 7663500 5152400 8120300 528760 10325000 10706000 12685000 8425900 7464600 7072600 6381000 7368100 2 2 1 2 2 2 2 2 2 2 2 5776800 9265300 125290 11047000 5479600 4771500 4331700 7351900 7076100 6847100 7855700 5379700 8652200 591540 11050000 5232800 5306000 4538800 7329600 7106300 6708000 7553900 2 2 2 2 2 2 2 2 2 2 2 1010600000 607100000 403540000 2122 2472 1985 12728;12729;12730;12731 15298;15299;15300;15301;15302 15300 5 AVPKEDIYSGGGGGGSR Unmodified 1605.7747 0.7746981 1601 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.294 35.349 3 1.5342E-15 7547 20211116_3444_TMUAki_TMT10x_S_F5 152.08 138.33 2312100 4279600 22102 3745900 9675700 7325900 3083800 4665100 5815500 3970600 4557800 2152900 3991300 315420 3912700 9113100 7182500 3557300 4856700 5752100 3906500 4435700 3 3 3 3 3 3 3 3 3 3 3 2064300 3786500 16736 3414400 9212400 6842400 2715000 3947900 4860000 3429200 3847900 1922200 3531800 286850 3560800 8670900 6694100 3160100 4144500 4814400 3370500 3743300 2 2 2 2 2 2 2 2 2 2 2 247830 493110 5366 331450 463350 483510 368810 717260 955510 541400 709930 230790 459520 28566 351830 442230 488440 397200 712200 937680 536000 692450 1 1 1 1 1 1 1 1 1 1 1 185560000 153710000 31850000 2123 1601 1986 12732;12733;12734 15303;15304;15305 15305 3 AVPKPDLDSYVFLR Unmodified 1618.8719 0.87189295 2644 Q9BRT9 GINS4 DNA replication complex GINS protein SLD5;DNA replication complex GINS protein SLD5, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 3.67 3.09 2 2 2 2 4 66.759 66.682 3 7.3008E-14 20764 20211116_3428_TMUAki_TMT10x_P_F1 147.12 123.19 38398000 62966000 324540 58259000 44045000 52463000 42331000 40713000 39330000 40612000 48044000 35754000 58736000 3487600 59680000 42204000 53539000 42935000 41984000 40452000 39668000 46077000 6 6 4 6 6 6 6 6 6 6 6 14517000 23430000 154400 21301000 14692000 26794000 16481000 15406000 15175000 15112000 18140000 13518000 21855000 1349900 21963000 14142000 26701000 16583000 16229000 15601000 14772000 17407000 2 2 2 2 2 2 2 2 2 2 2 23881000 39536000 170140 36958000 29353000 25669000 25851000 25307000 24155000 25500000 29904000 22236000 36881000 2137600 37717000 28062000 26838000 26352000 25755000 24852000 24896000 28669000 4 4 2 4 4 4 4 4 4 4 4 3862100000 2224300000 1637800000 2124 2644 1987 12735;12736;12737;12738;12739;12740 15306;15307;15308;15309;15310;15311;15312 15306 7 AVPLALALISVSNPR Unmodified 1519.9086 0.9086128 1609 Q13200;Q13200-3;Q13200-2 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS 7.23 0.799 3 4 6 8 5 74.488 74.507 2;3 1.0494E-23 28115 20211116_3446_TMUAki_TMT10x_S_F7 190.26 158.89 30399000 52232000 315110 45272000 36682000 42052000 38577000 27162000 25521000 28976000 34927000 28303000 48712000 2256400 46628000 35210000 42704000 38627000 28422000 26868000 28225000 33402000 11 11 5 11 11 11 11 11 11 11 11 13567000 21041000 78864 19159000 12427000 22278000 14519000 10732000 10605000 12222000 14856000 12631000 19626000 833010 19725000 11957000 22244000 14497000 11538000 11111000 11875000 14199000 6 6 2 6 6 6 6 6 6 6 6 16832000 31191000 236240 26113000 24255000 19774000 24058000 16430000 14915000 16754000 20072000 15672000 29086000 1423400 26904000 23253000 20460000 24130000 16883000 15757000 16350000 19203000 5 5 3 5 5 5 5 5 5 5 5 10065000000 4700900000 5363900000 2125 1609 1988 12741;12742;12743;12744;12745;12746;12747;12748;12749;12750;12751;12752;12753 15313;15314;15315;15316;15317;15318;15319;15320;15321;15322;15323;15324;15325;15326 15322 14 AVPLAVPLGQTEVFQALQR Unmodified 2036.1419 0.14186022 2119 Q86W42;Q86W42-3 THOC6 THO complex subunit 6 homolog yes no 0 0 0 0 By MS/MS By matching 2 0 2 1 1 78.835 78.808 3 9.6409E-05 27246 20211116_3429_TMUAki_TMT10x_P_F2 72.433 56.888 5299400 8638900 131400 7685300 4499200 9254400 5415000 4290100 4611800 4826500 5614000 4935200 8057500 550610 7931100 4345000 9219500 5419900 4628500 4762400 4691700 5384600 1 1 1 1 1 1 1 1 1 1 1 5299400 8638900 131400 7685300 4499200 9254400 5415000 4290100 4611800 4826500 5614000 4935200 8057500 550610 7931100 4345000 9219500 5419900 4628500 4762400 4691700 5384600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1972000000 1294700000 677330000 2126 2119 1989 12754;12755 15327 15327 1 AVPLIHQEGNR Unmodified 1232.6626 0.66256887 66 O00170 AIP AH receptor-interacting protein yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 32.529 32.512 3 1.9092E-08 7688 20211116_3433_TMUAki_TMT10x_P_F5 146.71 107.69 2314800 3553200 0 3252200 5553900 4818700 2709500 2741500 2717200 2276800 3151000 2155100 3314400 218760 3362500 5252600 4765700 2897400 2878300 2779400 2242800 3026300 3 3 0 3 3 3 3 3 3 3 3 2314800 3553200 0 3252200 5553900 4818700 2709500 2741500 2717200 2276800 3151000 2155100 3314400 218760 3362500 5252600 4765700 2897400 2878300 2779400 2242800 3026300 3 3 0 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 174870000 174870000 0 2127 66 1990 12756;12757 15328;15329;15330 15330 3 AVPLNASK Unmodified 798.45995 0.45995289 3050 Q9P0L0;Q9P0L0-2 VAPA Vesicle-associated membrane protein-associated protein A yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 34.925 35.128 2 0.015311 7568 20211116_3434_TMUAki_TMT10x_P_F6 77.072 28.285 276120 455410 1827.9 462960 579240 586500 382970 254950 321470 246340 361300 257100 424970 27817 473610 550510 582420 396820 275690 331150 240950 347300 2 2 1 2 2 2 2 2 2 2 2 276120 455410 1827.9 462960 579240 586500 382970 254950 321470 246340 361300 257100 424970 27817 473610 550510 582420 396820 275690 331150 240950 347300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9353500 9353500 0 2128 3050 1991 12758;12759 15331;15332 15331 2 AVPNPVINPYQPAPPSGYFMAAIPQTQNR Oxidation (M) 3153.5706 0.57058933 634 P11940;P11940-2 PABPC1 Polyadenylate-binding protein 1 yes no 0 0 1 0 By MS/MS By MS/MS 3 0 2 1 1 75.736 75.575 4 0.013834 27427 20211116_3441_TMUAki_TMT10x_S_F3 41.734 34.458 11600000 18226000 251110 18143000 10559000 15683000 12070000 7721600 8228000 8720100 11513000 10802000 17006000 1181100 18478000 10178000 15949000 12045000 8282500 8655300 8475400 11004000 2 2 2 2 2 2 2 2 2 2 2 9196700 13817000 204660 14223000 7572500 12889000 9312600 5852500 5981100 6645300 8688800 8564500 12894000 930460 14461000 7317000 13055000 9252000 6329300 6326600 6457500 8297900 1 1 1 1 1 1 1 1 1 1 1 2402900 4409000 46455 3919900 2986900 2793500 2757400 1869100 2247000 2074800 2824000 2237700 4112200 250690 4016700 2861000 2894500 2793100 1953200 2328700 2017900 2706400 1 1 1 1 1 1 1 1 1 1 1 1913100000 697010000 1216100000 2129 634 1992 12760;12761 15333 15333 660 1 AVPPTYADLGK Acetyl (Protein N-term) 1172.6077 0.60773933 760 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 1 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 62.554 62.345 2 0.0015246 19951 20211116_3442_TMUAki_TMT10x_S_F4 76.465 53.635 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2130 760 1993 12762;12763 15334;15335 15335 2 AVPREELFVTSK Unmodified 1374.7507 0.75071518 669 P14550 AKR1A1 Alcohol dehydrogenase [NADP(+)] yes yes 0 0 0 1 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 46.6 46.823 3 8.2188E-08 14091 20211116_3435_TMUAki_TMT10x_P_F7 110.51 76.131 31513000 49327000 415700 56056000 68247000 67855000 40287000 56742000 54655000 48104000 49521000 29344000 46052000 3421200 56888000 64755000 68149000 42772000 57993000 54791000 47337000 47930000 7 7 4 7 7 7 7 7 7 7 7 21670000 32791000 387560 38826000 58283000 58473000 32128000 36553000 35162000 31913000 32324000 20179000 30620000 2632900 39477000 55248000 57864000 34050000 38132000 35538000 31359000 31270000 4 4 3 4 4 4 4 4 4 4 4 9843200 16535000 28141 17230000 9964700 9382100 8158900 20189000 19493000 16191000 17197000 9164800 15432000 788330 17411000 9507300 10285000 8721200 19862000 19254000 15978000 16660000 3 3 1 3 3 3 3 3 3 3 3 2662300000 1627400000 1035000000 2131 669 1994 12764;12765;12766;12767;12768;12769 15336;15337;15338;15339;15340;15341;15342;15343;15344 15340 9 AVPSWFVR Unmodified 960.51814 0.51813647 1002 P41252 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 59.684 59.427 2 0.0020841 19905 20211116_3430_TMUAki_TMT10x_P_F3 113.89 86.768 3818900 5772600 0 6735600 6801900 7671200 5883600 3582800 3133900 3343400 4644900 3555400 5390100 318030 6817400 6496300 7665300 5930900 3841900 3362200 3275200 4434000 1 1 0 1 1 1 1 1 1 1 1 3818900 5772600 0 6735600 6801900 7671200 5883600 3582800 3133900 3343400 4644900 3555400 5390100 318030 6817400 6496300 7665300 5930900 3841900 3362200 3275200 4434000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 234680000 234680000 0 2132 1002 1995 12770;12771 15345;15346 15345 2 AVQALCAVYEHWVPR Unmodified 1797.8985 0.89845882 283 O60701;O60701-3;O60701-2 UGDH UDP-glucose 6-dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 73.373 73.167 3 4.2674E-20 26556 20211116_3441_TMUAki_TMT10x_S_F3 176.75 164.96 7541800 12668000 188840 11718000 8481100 12927000 9520400 7757900 7448800 7762300 9429000 7023400 11817000 791440 12040000 8168200 12979000 9538500 8148800 7738800 7580900 9034500 5 5 4 5 5 5 5 5 5 5 5 5327100 8395200 118060 7904400 5695600 9994000 6595300 5064700 4903100 5076300 6424400 4960800 7831800 533860 8129700 5489400 9941500 6590400 5398500 5116100 4957300 6150300 3 3 2 3 3 3 3 3 3 3 3 2214700 4272400 70782 3813800 2785600 2933400 2925200 2693300 2545600 2686100 3004600 2062600 3984900 257570 3909900 2678700 3037300 2948100 2750200 2622700 2623700 2884200 2 2 2 2 2 2 2 2 2 2 2 2063400000 933180000 1130200000 2133 283 1996 12772;12773;12774;12775 15347;15348;15349;15350;15351 15350 5 AVQCTSDYPEHVCEVLLTMER Unmodified 2536.1396 0.13962966 1753 Q15020;Q15020-4 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 0 0 0 0 By MS/MS 4 0 1 1 68.802 68.878 3 0.0033543 22117 20211116_3431_TMUAki_TMT10x_P_F4 56.766 49.814 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2134 1753 1997 12776 15352 15352 1 AVQDLCGWR Unmodified 1103.5182 0.51821282 3056 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 0 By MS/MS 6 0 1 1 47.946 48.037 2 0.031186 12653 20211116_3434_TMUAki_TMT10x_P_F6 64.841 34.271 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2135 3056 1998 12777 15353 15353 1 AVQELVHPVVDR Unmodified 1360.7463 0.7462985 12 A5YKK6;A5YKK6-3;A5YKK6-2;A5YKK6-4 CNOT1 CCR4-NOT transcription complex subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 41.701 41.843 3 0.10292 11179 20211116_3431_TMUAki_TMT10x_P_F4 26.648 1.7255 12875000 20014000 49165 20824000 23931000 20945000 14532000 15568000 14581000 14642000 17666000 11987000 18678000 1056100 21189000 22699000 21209000 15234000 16072000 14941000 14338000 16946000 2 2 1 2 2 2 2 2 2 2 2 9328500 14226000 0 14690000 19218000 17421000 10731000 11127000 10327000 10325000 12541000 8684100 13276000 699850 14994000 18200000 17437000 11316000 11607000 10602000 10117000 12029000 1 1 0 1 1 1 1 1 1 1 1 3546800 5787500 49165 6134200 4712900 3524000 3801800 4441300 4254200 4316300 5125600 3302800 5401700 356210 6194400 4499100 3771600 3917900 4465600 4339100 4220600 4917500 1 1 1 1 1 1 1 1 1 1 1 230870000 130550000 100310000 2136 12 1999 12778;12779 15354 15354 1 AVQFFVQALR Unmodified 1177.6608 0.66077796 2590 Q99615;Q99615-2 DNAJC7 DnaJ homolog subfamily C member 7 yes no 0 0 0 0 By MS/MS 5 0 1 1 74.87 74.881 2 0.00048658 23723 20211116_3444_TMUAki_TMT10x_S_F5 86.205 64.119 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2137 2590 2000 12780 15355 15355 1 AVQGFFTSNNATR Unmodified 1411.6844 0.68442653 203 O43242 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 0 0 0 0 By MS/MS By MS/MS 1.57 0.495 3 4 3 4 47.776 47.615 2;3 7.8549E-44 13035 20211116_3428_TMUAki_TMT10x_P_F1 285.32 246.52 4303000 7327200 23599 9734700 8447600 8148200 4945400 6906400 7766200 5705900 6632800 4006700 6846000 426530 9737200 8012600 8370800 5286800 7048700 7737100 5622100 6433500 4 4 2 4 4 4 4 4 4 4 4 2352400 3845000 0 5809200 6790800 6523900 3474400 3525100 4060000 2937800 3479200 2190300 3595100 246940 5798300 6427300 6534700 3715700 3717800 4084100 2893400 3374300 2 2 0 2 2 2 2 2 2 2 2 1950600 3482200 23599 3925500 1656800 1624300 1471000 3381400 3706200 2768100 3153500 1816400 3250900 179600 3938900 1585300 1836100 1571000 3330900 3653000 2728800 3059200 2 2 2 2 2 2 2 2 2 2 2 989720000 559420000 430300000 2138 203 2001 12781;12782;12783;12784;12785;12786;12787 15356;15357;15358;15359;15360 15356 5 AVQGGGATPVVGAVQGPVPGMPPMTQAPR 2 Oxidation (M) 2758.3895 0.38945384 567 P09012 SNRPA U1 small nuclear ribonucleoprotein A yes yes 0 0 2 0 By MS/MS By MS/MS 6.6 2.8 1 4 2 3 50.969 50.91 3;4 5.4393E-10 14584 20211116_3436_TMUAki_TMT10x_P_F8 99.171 87.539 5664000 9299100 142690 8848800 6066700 8012900 5150600 10228000 9226600 8620500 8372900 5274800 8675400 585970 9046500 5802000 8264300 5398500 10239000 9177800 8485500 8103400 9 9 7 9 9 9 9 9 9 9 9 1730700 2732100 34206 2613200 2414300 4668300 2468700 3725900 3134500 2756100 2749200 1611700 2548900 184940 2705000 2318400 4607800 2521900 3806800 3146000 2731700 2664000 3 3 3 3 3 3 3 3 3 3 3 3933300 6567000 108480 6235600 3652400 3344600 2681900 6502200 6092100 5864500 5623700 3663000 6126500 401020 6341500 3483600 3656500 2876700 6432500 6031800 5753800 5439500 6 6 4 6 6 6 6 6 6 6 6 2471100000 1114800000 1356300000 2139 567 2002 12788;12789;12790;12791;12792 15361;15362;15363;15364;15365;15366;15367;15368;15369 15363 535;536 9 AVQGMLDFDYVCSR Oxidation (M) 1675.7334 0.73342691 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 1 0 By MS/MS By MS/MS 4.33 0.667 1 4 4 4 5 57.911 58.008 2;3 2.4929E-13 16797 20211116_3444_TMUAki_TMT10x_S_F5 143.79 130.67 18326000 32141000 291790 31388000 23901000 31505000 21093000 26443000 26336000 25502000 25050000 17064000 29988000 1760900 32076000 22858000 31974000 21705000 27113000 26517000 24945000 24205000 8 8 4 8 8 8 8 8 8 8 8 8664500 15006000 83057 14191000 12226000 20358000 11209000 12402000 12004000 12405000 11852000 8067900 13999000 809240 14627000 11700000 20181000 11448000 13011000 12172000 12115000 11438000 4 4 1 4 4 4 4 4 4 4 4 9661200 17135000 208730 17197000 11675000 11147000 9884000 14041000 14332000 13097000 13198000 8996500 15989000 951670 17449000 11158000 11794000 10257000 14101000 14345000 12830000 12767000 4 4 3 4 4 4 4 4 4 4 4 3126500000 1773900000 1352600000 2140 1200 2003 12793;12794;12795;12796;12797;12798;12799;12800;12801 15370;15371;15372;15373;15374;15375;15376;15377;15378 15378 1601 9 AVQGMLDFDYVCSR Unmodified 1659.7385 0.73851229 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 69.671 69.637 3 0.00032044 21921 20211116_3445_TMUAki_TMT10x_S_F6 71.08 55.814 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2141 1200 2003 12802;12803 15379;15380 15380 2 AVRPGYPK Unmodified 886.50249 0.5024864 56 CON__Q3ZBS7 no no 0 0 0 1 By MS/MS By MS/MS 1.25 0.433 3 1 2 2 30.314 30.259 2;3 0.0011221 8023 20211116_3439_TMUAki_TMT10x_S_F1 113.5 72.272 + 3784100 10427000 89961 5304700 7461700 8091900 5883400 4014200 7396600 6446900 6319800 3524100 9710500 449080 5815200 7120400 7980000 6097200 4360000 7420400 6196200 6129800 4 4 4 4 4 4 4 4 4 4 4 2263100 6204800 42381 3177300 4916400 5440300 3826900 2419800 4406900 3925400 3676500 2107400 5778400 264280 3489100 4689200 5334700 3956700 2657800 4431900 3771700 3569200 2 2 2 2 2 2 2 2 2 2 2 1521100 4222400 47580 2127400 2545300 2651700 2056500 1594500 2989800 2521500 2643300 1416600 3932100 184800 2326100 2431200 2645200 2140500 1702200 2988400 2424500 2560600 2 2 2 2 2 2 2 2 2 2 2 308130000 208080000 100050000 2142 56 2005 12804;12805;12806;12807 15381;15382;15383;15384;15385 15384 5 AVSDWIDEQEK Unmodified 1318.6041 0.60411052 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 0 By MS/MS 3 0 1 1 59.142 58.896 2 2.7188E-17 19704 20211116_3430_TMUAki_TMT10x_P_F3 188.28 135.7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2143 1576 2006 12808 15386 15386 1 AVSEVCRIPTHLFTFIQFKK Unmodified 2420.3039 0.30385694 602 P10155;P10155-5;P10155-3;P10155-4;P10155-2 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes no 0 0 0 2 By MS/MS 7 0 1 1 69.273 69.721 5 0.00010373 23425 20211116_3435_TMUAki_TMT10x_P_F7 72.585 59.173 2930400 4528500 0 4786800 3272500 5800300 3014000 3238600 2101800 2849700 3067600 2727900 4226500 165130 4880300 3126000 5788900 3042500 3410500 2212400 2799200 2929300 1 1 0 1 1 1 1 1 1 1 1 2930400 4528500 0 4786800 3272500 5800300 3014000 3238600 2101800 2849700 3067600 2727900 4226500 165130 4880300 3126000 5788900 3042500 3410500 2212400 2799200 2929300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 915950000 915950000 0 2144 602 2007 12809 15387 15387 1 AVSILPLLGHGVPR Unmodified 1427.8613 0.86126868 3253 Q9Y2W2 WBP11 WW domain-binding protein 11 yes yes 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 2 3 63.549 63.592 3 5.1021E-14 19892 20211116_3431_TMUAki_TMT10x_P_F4 147.18 110.86 4130200 6962000 170510 7402900 5147700 6647500 5124100 5066300 4989400 5294900 5608300 3846900 6498000 515580 7509700 4945500 6783100 5194600 5237700 5103700 5161800 5391000 4 4 4 4 4 4 4 4 4 4 4 2148100 3476300 88549 3742100 2928900 4508200 2929100 2638700 2508000 2802200 2906600 2000800 3244700 271550 3810200 2813700 4503400 2958100 2782100 2584100 2730000 2791600 2 2 2 2 2 2 2 2 2 2 2 1982000 3485800 81962 3660800 2218800 2139300 2195000 2427600 2481400 2492700 2701700 1846100 3253200 244030 3699500 2131800 2279700 2236600 2455600 2519700 2431800 2599400 2 2 2 2 2 2 2 2 2 2 2 3055600000 1502800000 1552900000 2145 3253 2008 12810;12811;12812;12813;12814 15388;15389;15390;15391;15392 15388 5 AVSISTEPPTYLR Unmodified 1432.7562 0.75619449 1568 Q12824;Q12824-2 SMARCB1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.71 1.03 1 2 2 2 4 3 52.329 52.623 2 2.6256E-53 14849 20211116_3445_TMUAki_TMT10x_S_F6 299.28 201.85 16140000 27086000 68507 29723000 19631000 21581000 15625000 21593000 20931000 19351000 22547000 15027000 25284000 1332900 30015000 18719000 22488000 16223000 21887000 21119000 18991000 21700000 6 6 2 6 6 6 6 6 6 6 6 5690100 8818300 0 9889800 9265000 12582000 7360900 6826000 7114100 6588500 7212200 5297700 8232400 481350 10054000 8833200 12522000 7558400 7223600 7251600 6444400 6954300 2 2 0 2 2 2 2 2 2 2 2 10450000 18268000 68507 19834000 10366000 8999000 8264600 14767000 13817000 12762000 15335000 9729700 17052000 851570 19961000 9885400 9965500 8664900 14663000 13868000 12547000 14746000 4 4 2 4 4 4 4 4 4 4 4 2078600000 1047400000 1031200000 2146 1568 2009 12815;12816;12817;12818;12819;12820;12821 15393;15394;15395;15396;15397;15398;15399 15397 7 AVSSAIAQLLGEVAQGNENYAGIAAR Unmodified 2572.3245 0.32452862 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.25 2.77 1 2 1 3 1 81.504 81.501 3 6.7783E-74 27072 20211116_3440_TMUAki_TMT10x_S_F2 243.21 220.84 2860900 4696600 26137 4661100 3070300 4129700 3291100 2465900 2638800 2620100 3564700 2663700 4382300 226840 4749600 2948600 4202500 3306600 2595800 2746000 2552600 3410100 4 4 2 4 4 4 4 4 4 4 4 1578000 2563900 6978.1 2490200 1194300 2684200 1465500 1186700 1344200 1372000 1835200 1469200 2392100 118830 2548500 1151600 2688900 1468500 1287700 1390200 1332300 1755200 2 2 1 2 2 2 2 2 2 2 2 1282900 2132700 19159 2170900 1876000 1445500 1825700 1279200 1294700 1248200 1729500 1194500 1990200 108010 2201100 1797100 1513600 1838100 1308100 1355800 1220300 1654900 2 2 1 2 2 2 2 2 2 2 2 1665100000 818310000 846750000 2147 3293 2010 12822;12823;12824;12825 15400;15401;15402;15403;15404 15403 5 AVTELNEPLSNEDR Unmodified 1585.7584 0.75837933 1515 Q04917 YWHAH 14-3-3 protein eta yes yes 0 0 0 0 By MS/MS By MS/MS 1.83 0.687 2 3 1 3 3 44.589 44.4 2;3 3.0126E-85 13326 20211116_3429_TMUAki_TMT10x_P_F2 351.39 300.11 2925000 4786700 82128 6682300 8330800 7235300 4272400 5154500 6136700 4030300 5197600 2723900 4473600 378780 6691400 7889900 7290000 4603500 5312100 6128100 3982500 5043000 5 5 3 5 5 5 5 5 5 5 5 2069300 3463600 80966 4585900 7763600 6674600 3697400 3577700 4058900 2870400 3443100 1927200 3236100 318600 4630400 7346300 6601200 3974200 3772700 4091500 2832500 3340500 3 3 2 3 3 3 3 3 3 3 3 855710 1323000 1162.1 2096300 567150 560730 575000 1576800 2077800 1159900 1754500 796690 1237400 60173 2061000 543570 688790 629360 1539400 2036600 1150000 1702500 2 2 1 2 2 2 2 2 2 2 2 535830000 340270000 195570000 2148 1515 2011 12826;12827;12828;12829;12830;12831 15405;15406;15407;15408;15409 15405 5 AVTELNEPLSNEDRNLLSVAYK Unmodified 2474.2653 0.26528241 1515 Q04917 YWHAH 14-3-3 protein eta yes yes 0 0 0 1 By MS/MS By MS/MS 4.73 1.34 1 2 3 4 4 1 8 7 67.863 67.774 3;4 5.2336E-83 21106 20211116_3445_TMUAki_TMT10x_S_F6 279.73 253.59 151570000 249180000 905190 232240000 186800000 220950000 171140000 169690000 157960000 168470000 192500000 141120000 232450000 12473000 237950000 178680000 224630000 174000000 175080000 162500000 164590000 184630000 21 21 10 21 21 21 21 21 21 21 21 72684000 117450000 162290 113020000 73230000 135870000 85974000 82112000 74195000 79485000 88860000 67675000 109580000 5945300 115960000 70531000 135800000 86176000 86120000 76517000 77737000 85266000 10 10 3 10 10 10 10 10 10 10 10 78882000 131730000 742900 119220000 113570000 85073000 85162000 87577000 83767000 88989000 103640000 73443000 122880000 6527200 122000000 108150000 88829000 87825000 88959000 85985000 86853000 99361000 11 11 7 11 11 11 11 11 11 11 11 21877000000 10217000000 11660000000 2149 1515 2012 12832;12833;12834;12835;12836;12837;12838;12839;12840;12841;12842;12843;12844;12845;12846 15410;15411;15412;15413;15414;15415;15416;15417;15418;15419;15420;15421;15422;15423;15424;15425;15426;15427;15428;15429;15430;15431 15430 22 AVTEQGAELSNEER Unmodified 1531.7114 0.71142914 825 P27348 YWHAQ 14-3-3 protein theta yes yes 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 4 2 2 4 4 33.85 33.738 2;3 1.7226E-84 8962 20211116_3429_TMUAki_TMT10x_P_F2 335.45 287.36 5557700 9428300 31121 10347000 14887000 8460400 6681100 5354700 6652400 4581500 8141600 5174700 8801000 573600 10463000 14067000 8665500 7205100 5577900 6821800 4506400 7807800 9 9 5 9 9 9 9 9 9 9 9 3390800 5856400 22487 6425300 12523000 6702300 4115200 3310400 4081700 2750600 4901500 3157000 5466700 396830 6518900 11795000 6734500 4612800 3520200 4183000 2709500 4702900 4 4 2 4 4 4 4 4 4 4 4 2167000 3571900 8633.4 3922000 2363700 1758100 2565900 2044200 2570700 1830900 3240100 2017600 3334300 176770 3944000 2271100 1930900 2592300 2057600 2638800 1796900 3104900 5 5 3 5 5 5 5 5 5 5 5 1450200000 984930000 465310000 2150 825 2013 12847;12848;12849;12850;12851;12852;12853;12854 15432;15433;15434;15435;15436;15437;15438;15439;15440 15435 9 AVTEQGAELSNEERNLLSVAYK Unmodified 2420.2183 0.21833222 825 P27348 YWHAQ 14-3-3 protein theta yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 68.717 68.538 3 1.3229E-55 22474 20211116_3442_TMUAki_TMT10x_S_F4 227.38 198.91 5782500 10561000 187560 9350600 13533000 5981400 5858700 8398600 7050900 6465900 8290800 5385500 9850400 762750 9574300 12794000 6355600 6380900 8359300 7164900 6394600 7959400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5782500 10561000 187560 9350600 13533000 5981400 5858700 8398600 7050900 6465900 8290800 5385500 9850400 762750 9574300 12794000 6355600 6380900 8359300 7164900 6394600 7959400 2 2 2 2 2 2 2 2 2 2 2 747240000 0 747240000 2151 825 2014 12855;12856 15441;15442;15443 15443 3 AVTEQGHELSNEER Unmodified 1597.7332 0.73322721 895 P31946;P31946-2 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 1.89 0.994 4 3 1 1 5 4 26.863 26.815 2;3 9.1771E-87 6867 20211116_3429_TMUAki_TMT10x_P_F2 354.49 313.11 690150 1196200 3007.2 1046700 1079100 1134200 793710 585460 703990 627710 849160 642560 1115600 53692 1079700 1027200 1137800 817240 624220 725260 611320 814660 8 8 2 8 8 8 8 8 8 8 8 402280 677310 1243.1 583810 731870 826650 443190 345460 408230 365800 498400 374540 631650 32112 605820 694330 816340 463560 376130 420030 356420 478000 5 5 1 5 5 5 5 5 5 5 5 287870 518880 1764.1 462900 347220 307600 350520 240010 295760 261910 350750 268020 483960 21580 473870 332900 321420 353680 248090 305230 254900 336660 3 3 1 3 3 3 3 3 3 3 3 347180000 211820000 135360000 2152 895 2015 12857;12858;12859;12860;12861;12862;12863;12864;12865 15444;15445;15446;15447;15448;15449;15450;15451 15446 8 AVTGTHTLALAAK Unmodified 1252.7139 0.71393574 1119 P49770 EIF2B2 Translation initiation factor eIF-2B subunit beta yes yes 0 0 0 0 By MS/MS By MS/MS 5 3.29 2 1 2 3 2 38.535 38.742 3 3.7169E-15 11634 20211116_3439_TMUAki_TMT10x_S_F1 174.24 125.45 3141400 5015600 47162 5232400 4934300 4533900 3446500 3701800 3701800 3273500 4370800 2925300 4680900 319210 5312200 4696100 4643300 3581600 3792900 3778500 3214800 4195600 6 6 4 6 6 6 6 6 6 6 6 1626400 2531300 8565.6 2614600 3329600 3270400 1988800 1863400 1935600 1665400 2102600 1514300 2362300 156380 2671300 3158700 3259600 2085700 1959600 1977400 1634700 2023100 4 4 2 4 4 4 4 4 4 4 4 1515000 2484300 38596 2617800 1604700 1263500 1457700 1838400 1766200 1608100 2268200 1410900 2318600 162830 2640900 1537300 1383700 1495900 1833300 1801100 1580100 2172500 2 2 2 2 2 2 2 2 2 2 2 308420000 153950000 154470000 2153 1119 2016 12866;12867;12868;12869;12870 15452;15453;15454;15455;15456;15457 15456 6 AVTIFIR Unmodified 818.50142 0.50142377 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 54.133 53.998 2 0.001289 15677 20211116_3428_TMUAki_TMT10x_P_F1 139.27 46.574 32261000 52261000 47590 52905000 48725000 57845000 36265000 44586000 41814000 39610000 40700000 30035000 48767000 2584500 54000000 46386000 58326000 37609000 45852000 42257000 38890000 39296000 8 8 2 8 8 8 8 8 8 8 8 19302000 30330000 0 31518000 34307000 45541000 24101000 26249000 24968000 23304000 23991000 17970000 28305000 1549500 32279000 32622000 45096000 25008000 27573000 25328000 22881000 23174000 4 4 0 4 4 4 4 4 4 4 4 12959000 21931000 47590 21387000 14418000 12304000 12164000 18338000 16846000 16306000 16709000 12065000 20462000 1035000 21721000 13764000 13230000 12601000 18279000 16928000 16009000 16123000 4 4 2 4 4 4 4 4 4 4 4 5592300000 3381100000 2211100000 2154 1079 2017 12871;12872;12873;12874;12875;12876;12877;12878 15458;15459;15460;15461;15462;15463;15464;15465 15458 8 AVTLDKDAYYR Acetyl (Protein N-term) 1355.6721 0.67213051 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 1 0 0 1 By MS/MS 4 0 1 1 51.436 51.602 2 4.1366E-05 15034 20211116_3431_TMUAki_TMT10x_P_F4 55.908 40.7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2155 3317 2018 12879 15466 15466 1 AVTLDKDAYYRR Acetyl (Protein N-term) 1511.7732 0.77324153 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 1 0 0 2 By MS/MS 5.5 0.5 1 1 2 42.504 42.649 3 0.0031625 10743 20211116_3445_TMUAki_TMT10x_S_F6 48.948 25.712 1603400 2942300 40436 2801200 1822400 1671600 1596600 3484100 3479400 2483200 2840600 1493200 2744900 173680 2850800 1744200 1813300 1689600 3421000 3434600 2466500 2760000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1603400 2942300 40436 2801200 1822400 1671600 1596600 3484100 3479400 2483200 2840600 1493200 2744900 173680 2850800 1744200 1813300 1689600 3421000 3434600 2466500 2760000 2 2 2 2 2 2 2 2 2 2 2 85129000 0 85129000 2156 3317 2019 12880;12881 15467 15467 1 AVTLHDQGTAQWADLSSQFYLR Unmodified 2506.2241 0.2240863 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By MS/MS 8 0 1 1 72.248 72.076 3 9.4417E-09 22626 20211116_3447_TMUAki_TMT10x_S_F8 103.31 88.958 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2157 769 2020 12882 15468 15468 1 AVTLHDQGTAQWADLSSQFYLREEDIGK Unmodified 3177.5367 0.53670624 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 1 By MS/MS 7 0 1 1 71.383 71.625 4 0.0053392 24795 20211116_3446_TMUAki_TMT10x_S_F7 45.862 34.446 2266400 4255500 67672 3513100 3061200 2447600 3033700 1740600 1384200 1999900 2951400 2110700 3968100 262100 3620400 2938600 2543300 3027600 1813100 1536000 1942500 2798600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2266400 4255500 67672 3513100 3061200 2447600 3033700 1740600 1384200 1999900 2951400 2110700 3968100 262100 3620400 2938600 2543300 3027600 1813100 1536000 1942500 2798600 1 1 1 1 1 1 1 1 1 1 1 921190000 0 921190000 2158 769 2021 12883 15469 15469 1 AVTPLRPGELLFR Unmodified 1467.8562 0.8561833 2824 Q9H7B4 SMYD3 Histone-lysine N-methyltransferase SMYD3 yes yes 0 0 0 1 By MS/MS By MS/MS 3.6 0.49 2 3 2 3 58.382 58.234 3 1.2151E-11 19442 20211116_3430_TMUAki_TMT10x_P_F3 147.7 109.7 7004600 11300000 56708 11125000 8649600 11050000 8178600 7843100 7188900 7263000 8733200 6522400 10544000 655110 11360000 8285100 11189000 8289900 8118800 7411600 7117300 8376800 3 3 2 3 3 3 3 3 3 3 3 4583400 7263800 52612 7098300 5604800 8529700 5558800 5396600 4769700 4852800 5800500 4268000 6777300 441830 7274600 5376100 8530800 5616500 5628800 4923400 4761900 5563600 2 2 1 2 2 2 2 2 2 2 2 2421200 4036600 4096.5 4026300 3044800 2519900 2619800 2446500 2419300 2410200 2932700 2254400 3766600 213280 4085700 2909000 2658400 2673400 2490000 2488200 2355400 2813200 1 1 1 1 1 1 1 1 1 1 1 1435300000 664300000 770970000 2159 2824 2022 12884;12885;12886;12887;12888 15470;15471;15472;15473 15470 4 AVTPPMPLLTPATPGGLPPAAAVAAAAATAK Oxidation (M) 2809.5412 0.54118668 3124 Q9UHX1-6;Q9UHX1-5;Q9UHX1-4;Q9UHX1-2;Q9UHX1;Q9UHX1-3 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 0 0 1 0 By MS/MS By MS/MS 3.43 0.495 4 3 3 4 78.818 78.766 3;4 2.0553E-20 28710 20211116_3441_TMUAki_TMT10x_S_F3 126.42 118.98 23259000 37219000 235100 31642000 26653000 36247000 27773000 27426000 28019000 30210000 30233000 21658000 34708000 1571200 32743000 25594000 36444000 28120000 28413000 28572000 29390000 29096000 9 9 4 9 9 9 9 9 9 9 9 11120000 15241000 113000 13344000 9959000 19733000 11202000 11053000 11680000 13039000 12395000 10354000 14214000 464670 13843000 9587200 19514000 11313000 11736000 11886000 12653000 11935000 4 4 2 4 4 4 4 4 4 4 4 12140000 21978000 122100 18298000 16694000 16514000 16570000 16373000 16339000 17171000 17837000 11304000 20494000 1106600 18900000 16007000 16930000 16807000 16678000 16686000 16738000 17161000 5 5 2 5 5 5 5 5 5 5 5 14308000000 5862600000 8445900000 2160 3124 2023 12889;12890;12891;12892;12893;12894;12895 15474;15475;15476;15477;15478;15479;15480;15481;15482 15478 3147 9 AVTPPMPLLTPATPGGLPPAAAVAAAAATAK Unmodified 2793.5463 0.54627206 3124 Q9UHX1-6;Q9UHX1-5;Q9UHX1-4;Q9UHX1-2;Q9UHX1;Q9UHX1-3 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 0 0 0 0 By MS/MS By MS/MS 4.17 0.687 1 3 2 4 2 80.136 80.127 3;4 2.0719E-20 25876 20211116_3444_TMUAki_TMT10x_S_F5 128.06 119.46 14739000 23443000 84417 25828000 16325000 16447000 18321000 7264000 6686600 9514300 16060000 13724000 21884000 1322800 26040000 15708000 17128000 18119000 7916300 7644200 9199400 15203000 5 5 5 5 5 5 5 5 5 5 5 7861700 11802000 40455 13095000 7440100 11078000 9512100 4317500 4119400 5757000 8335000 7320300 11018000 683580 13237000 7188500 11258000 9373200 4774000 4576300 5563200 7910000 3 3 3 3 3 3 3 3 3 3 3 6876800 11641000 43961 12733000 8884900 5369300 8809100 2946500 2567300 3757300 7725300 6403300 10866000 639230 12802000 8520000 5869600 8746100 3142300 3067900 3636200 7292600 2 2 2 2 2 2 2 2 2 2 2 10807000000 6023100000 4783700000 2161 3124 2023 12896;12897;12898;12899;12900;12901 15483;15484;15485;15486;15487 15487 5 AVTTPGKK Unmodified 800.4756 0.47560295 729 P19338 NCL Nucleolin yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 30.148 30.181 3 0.036176 6069 20211116_3428_TMUAki_TMT10x_P_F1 55.898 25.712 5696000 9450700 44301 8328200 6140600 7169800 6293100 5022700 7143400 4677200 6931700 5303500 8814300 468990 8558100 5891100 7327300 6401700 5204700 7222500 4582200 6693300 2 2 1 2 2 2 2 2 2 2 2 2062000 3183700 0 2786800 2508600 3897900 2572600 1737700 2402600 1656500 2370200 1919500 2969200 126450 2887700 2403700 3853900 2600900 1873400 2450500 1621100 2287500 1 1 0 1 1 1 1 1 1 1 1 3634000 6267000 44301 5541400 3632000 3271800 3720500 3285000 4740800 3020700 4561500 3384000 5845100 342540 5670500 3487400 3473400 3800800 3331300 4772000 2961100 4405900 1 1 1 1 1 1 1 1 1 1 1 83526000 32397000 51129000 2162 729 2024 12902;12903 15488;15489 15488 2 AVTTVTQSTPVPGPSVPPPEELQVSPGPR Unmodified 2923.5291 0.52910167 1160 P51610;P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 0 0 By MS/MS 6 0 1 1 63.198 63.176 4 2.6646E-13 19230 20211116_3445_TMUAki_TMT10x_S_F6 113.93 108.03 4350200 8479000 109840 8258800 5882900 4773800 5039500 6082700 5067100 5772300 6294300 4051300 7911000 484500 8388800 5626200 5107600 5156800 6109100 5197200 5650300 6033900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4350200 8479000 109840 8258800 5882900 4773800 5039500 6082700 5067100 5772300 6294300 4051300 7911000 484500 8388800 5626200 5107600 5156800 6109100 5197200 5650300 6033900 2 2 2 2 2 2 2 2 2 2 2 671540000 0 671540000 2163 1160 2025 12904 15490;15491 15490 2 AVTVMMDPNSTQR Oxidation (M) 1464.6701 0.67009837 2852 Q9HAV4 XPO5 Exportin-5 yes yes 0 0 1 0 By MS/MS 6 0 1 1 35.855 36.022 3 0.06661 8263 20211116_3445_TMUAki_TMT10x_S_F6 40.676 30.788 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2164 2852 2026 12905 15492 15492 2978 1 AVTVYTNYPFPGETFNR Unmodified 1974.9476 0.94757708 933 P35573;P35573-2;P35573-3 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 1 1 1 1 68.128 68.086 3 1.7184E-05 23423 20211116_3439_TMUAki_TMT10x_S_F1 87.388 71.995 4585900 8216300 24934 7086800 5122900 8475700 5842900 6032900 6066200 5883200 6637600 4270000 7662400 406060 7330300 4931300 8493900 5896000 6252700 6181900 5752000 6385400 2 2 1 2 2 2 2 2 2 2 2 3012700 5537300 0 4467300 3179300 6787400 4120000 4166200 4013300 4032100 4247700 2805000 5162900 247200 4667700 3071800 6712600 4126600 4364200 4095800 3943500 4090400 1 1 0 1 1 1 1 1 1 1 1 1573200 2679000 24934 2619500 1943600 1688300 1722900 1866700 2052900 1851000 2389900 1465000 2499600 158860 2662600 1859600 1781300 1769400 1888500 2086000 1808500 2295000 1 1 1 1 1 1 1 1 1 1 1 855480000 673240000 182230000 2165 933 2027 12906;12907 15493;15494 15494 2 AVVDKVFFSR Unmodified 1166.6448 0.64479354 840 P28288;P28288-2;P28288-3 ABCD3 ATP-binding cassette sub-family D member 3 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 56.585 56.262 3 0.059009 18120 20211116_3429_TMUAki_TMT10x_P_F2 43.512 19.744 10823000 17532000 34333 15026000 12444000 19225000 10423000 16795000 15230000 14997000 15878000 10077000 16350000 895750 15569000 11880000 19271000 10827000 17145000 15307000 14721000 15297000 3 3 1 3 3 3 3 3 3 3 3 3573400 5823900 34333 4944000 6921600 11579000 5098200 5846500 5026000 5133200 5575500 3327400 5431000 375150 5205000 6593000 11257000 5264400 6212200 5135700 5042800 5361500 1 1 1 1 1 1 1 1 1 1 1 7250100 11708000 0 10082000 5522500 7646000 5325300 10949000 10204000 9863500 10303000 6750100 10919000 520610 10364000 5286700 8013700 5563000 10933000 10171000 9677900 9935700 2 2 0 2 2 2 2 2 2 2 2 1319300000 726600000 592670000 2166 840 2028 12908;12909;12910;12911 15495;15496;15497;15498;15499 15495 5 AVVEVNIPVESEVNLK Unmodified 1737.9513 0.95126548 2939 Q9NRZ9;Q9NRZ9-4;Q9NRZ9-3;Q9NRZ9-2;Q9NRZ9-6;Q9NRZ9-5 HELLS Lymphoid-specific helicase yes no 0 0 0 0 By MS/MS By MS/MS 3.5 1.5 1 1 1 1 70.29 70.156 3 0.00027993 21817 20211116_3444_TMUAki_TMT10x_S_F5 68.173 48.334 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2167 2939 2029 12912;12913 15500;15501 15501 2 AVVGVVAGGGR Unmodified 940.54541 0.54541385 1384 P62917 RPL8 60S ribosomal protein L8 yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 2.49 2 2 1 1 2 2 3 5 9 9 34.898 35.06 2 5.2399E-24 7036 20211116_3447_TMUAki_TMT10x_S_F8 255.21 190.46 27588000 44866000 77217 46448000 40412000 37074000 29695000 25356000 26149000 24122000 33941000 25686000 41871000 2274300 47133000 38467000 38083000 30571000 26335000 27034000 23610000 32501000 25 25 11 25 25 25 25 25 25 25 25 14945000 24247000 57666 25252000 27736000 27167000 17789000 13054000 13904000 12678000 18159000 13915000 22629000 1352900 25719000 26340000 27240000 18444000 13973000 14466000 12398000 17385000 17 17 8 17 17 17 17 17 17 17 17 12643000 20619000 19552 21196000 12676000 9907400 11906000 12303000 12245000 11444000 15783000 11771000 19242000 921390 21414000 12127000 10843000 12128000 12362000 12568000 11212000 15115000 8 8 3 8 8 8 8 8 8 8 8 3280800000 1770100000 1510700000 2168 1384 2030 12914;12915;12916;12917;12918;12919;12920;12921;12922;12923;12924;12925;12926;12927;12928;12929;12930;12931 15502;15503;15504;15505;15506;15507;15508;15509;15510;15511;15512;15513;15514;15515;15516;15517;15518;15519;15520;15521;15522;15523;15524;15525;15526;15527;15528;15529 15526 28 AVVGVVAGGGRIDKPILK Unmodified 1748.0672 0.06723871 1384 P62917 RPL8 60S ribosomal protein L8 yes yes 0 0 0 2 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 52.095 52.054 4 1.3851E-23 15648 20211116_3442_TMUAki_TMT10x_S_F4 172.56 160.94 38555000 58119000 257290 64394000 60809000 45034000 33924000 59854000 49409000 43870000 51948000 35900000 54255000 3664300 64959000 57641000 47405000 36295000 59629000 49678000 43505000 50033000 5 5 3 5 5 5 5 5 5 5 5 11011000 15134000 146740 17177000 20787000 24257000 12615000 18329000 14394000 12128000 14009000 10254000 14129000 1186600 17485000 19735000 24142000 13278000 18749000 14551000 12100000 13526000 1 1 1 1 1 1 1 1 1 1 1 27544000 42985000 110540 47217000 40022000 20777000 21309000 41525000 35016000 31743000 37939000 25646000 40125000 2477700 47474000 37906000 23264000 23017000 40880000 35126000 31404000 36508000 4 4 2 4 4 4 4 4 4 4 4 3021800000 1713200000 1308600000 2169 1384 2031 12932;12933;12934 15530;15531;15532;15533;15534 15533 5 AVVISGAGK Unmodified 800.4756 0.47560295 1584 Q13011 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 37.995 38.379 2 0.0011579 10689 20211116_3435_TMUAki_TMT10x_P_F7 101.72 67.718 1304300 2149600 30112 2058000 1817300 2153800 1512400 1160700 1209900 1265400 1651300 1214600 2005500 143380 2107400 1736600 2165900 1540600 1233300 1259800 1231500 1579300 3 3 3 3 3 3 3 3 3 3 3 951150 1556900 18564 1495000 1412600 1806600 1127600 828850 911890 933300 1213100 885750 1452500 102620 1534200 1348500 1799300 1152000 895190 947820 907200 1160900 2 2 2 2 2 2 2 2 2 2 2 353120 592720 11547 562950 404620 347160 384740 331820 298000 332100 438220 328880 552960 40759 573180 388160 366630 388610 338160 311940 324340 418400 1 1 1 1 1 1 1 1 1 1 1 50219000 35513000 14706000 2170 1584 2032 12935;12936;12937 15535;15536;15537 15535 3 AVVIVDDR Unmodified 885.49198 0.4919813 1779;777 Q15233;Q15233-2;P23246;P23246-2 NONO;SFPQ Non-POU domain-containing octamer-binding protein;Splicing factor, proline- and glutamine-rich no no 0 0 0 0 By MS/MS By MS/MS 4.67 2.33 2 2 3 2 1 2 4 2 7 11 37.767 37.891 2 0.00043159 10950 20211116_3429_TMUAki_TMT10x_P_F2 147.34 86.548 49752000 71970000 83445 75284000 58486000 62539000 47712000 47374000 44922000 46941000 56374000 46318000 67168000 3534400 76378000 55762000 64156000 48873000 48919000 46229000 45863000 54028000 24 24 10 24 24 24 24 24 24 24 24 27403000 37719000 25944 39092000 32989000 42192000 23868000 24543000 24140000 25604000 29368000 25512000 35201000 1972500 39830000 31378000 42394000 24696000 25876000 24732000 24963000 28168000 12 12 4 12 12 12 12 12 12 12 12 22349000 34251000 57501 36192000 25497000 20347000 23844000 22832000 20782000 21337000 27006000 20806000 31967000 1561900 36548000 24385000 21761000 24178000 23043000 21497000 20900000 25859000 12 12 6 12 12 12 12 12 12 12 12 18040000000 8790100000 9249400000 2171 1779;777 2033 12938;12939;12940;12941;12942;12943;12944;12945;12946;12947;12948;12949;12950;12951;12952;12953;12954;12955 15538;15539;15540;15541;15542;15543;15544;15545;15546;15547;15548;15549;15550;15551;15552;15553;15554;15555;15556;15557;15558;15559;15560;15561;15562;15563 15539 26 AVVIVDDRGR Unmodified 1098.6146 0.61455605 1779;777 Q15233;Q15233-2;P23246;P23246-2 NONO;SFPQ Non-POU domain-containing octamer-binding protein;Splicing factor, proline- and glutamine-rich no no 0 0 0 1 By MS/MS By MS/MS 3.22 1.47 2 1 1 3 2 5 4 31.631 31.587 2;3 1.4212E-10 10035 20211116_3441_TMUAki_TMT10x_S_F3 197.79 167.22 9173200 14271000 79993 13121000 11988000 15286000 9864700 12240000 11531000 10317000 12187000 8541800 13312000 873970 13499000 11446000 15371000 10169000 12541000 11682000 10156000 11736000 8 8 7 8 8 8 8 8 8 8 8 7117700 10588000 57387 9862300 8873300 13178000 7504000 9586100 9032800 8018100 9151700 6627700 9876600 668170 10162000 8477100 13139000 7730500 9880800 9126600 7895500 8824600 5 5 5 5 5 5 5 5 5 5 5 2055500 3683400 22605 3258200 3114700 2108600 2360700 2654300 2498700 2299200 3035000 1914100 3435400 205800 3336800 2968900 2231300 2438300 2660600 2555000 2260200 2911100 3 3 2 3 3 3 3 3 3 3 3 1064700000 797510000 267170000 2172 1779;777 2034 12956;12957;12958;12959;12960;12961;12962;12963;12964 15564;15565;15566;15567;15568;15569;15570;15571;15572 15570 9 AVVLAANHFGR Unmodified 1153.6356 0.63562584 1630 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 By MS/MS 2 0.816 1 1 1 3 38.995 38.898 3 5.8994E-12 12646 20211116_3441_TMUAki_TMT10x_S_F3 176.38 150.44 1088600 1989000 20048 1947500 1626400 928140 1301200 1276200 1373000 1080000 1492700 1013800 1855800 116470 1974400 1552500 1016200 1339100 1274100 1397900 1062900 1436200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1088600 1989000 20048 1947500 1626400 928140 1301200 1276200 1373000 1080000 1492700 1013800 1855800 116470 1974400 1552500 1016200 1339100 1274100 1397900 1062900 1436200 2 2 2 2 2 2 2 2 2 2 2 106110000 0 106110000 2173 1630 2035 12965;12966;12967 15573;15574 15574 2 AVVLAGFGGLNK Unmodified 1144.6604 0.66044361 2867 Q9HCJ6 VAT1L Synaptic vesicle membrane protein VAT-1 homolog-like yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 3 2 1 67.103 67.057 2 2.7856E-16 21876 20211116_3442_TMUAki_TMT10x_S_F4 200.16 152.96 7519500 12310000 66878 12748000 9354500 12232000 8455500 8686500 8075600 8174400 9672500 7001900 11488000 711450 12966000 8951000 12413000 8612000 8995500 8288800 8004600 9281300 2 2 2 2 2 2 2 2 2 2 2 4595300 7475800 18525 7525200 6009400 9367500 5456500 5248800 4883600 4913400 5805700 4278900 6975900 418060 7701000 5749300 9336800 5545900 5534400 5026100 4812500 5572000 1 1 1 1 1 1 1 1 1 1 1 2924200 4833800 48352 5222600 3345100 2864200 2999000 3437800 3192000 3261000 3866800 2723100 4511900 293390 5265200 3201700 3076200 3066100 3461000 3262800 3192100 3709300 1 1 1 1 1 1 1 1 1 1 1 723110000 249570000 473540000 2174 2867 2036 12968;12969;12970 15575;15576;15577 15577 3 AVVLMGK Oxidation (M) 732.4204 0.42039626 508 P05388;P05388-2 RPLP0 60S acidic ribosomal protein P0 yes no 0 0 1 0 By MS/MS By MS/MS 7 0.756 2 3 2 3 4 38.537 38.852 2 0.02476 10728 20211116_3446_TMUAki_TMT10x_S_F7 91.093 60.375 9239700 15344000 110630 14895000 17604000 19724000 12371000 12621000 14256000 11167000 13577000 8603500 14316000 927520 15299000 16751000 19636000 12881000 13147000 14396000 10966000 13118000 7 7 6 7 7 7 7 7 7 7 7 7505500 12208000 80575 12135000 15715000 18014000 10673000 10082000 11436000 8876400 10924000 6988500 11391000 753560 12473000 14943000 17810000 11114000 10615000 11583000 8718800 10554000 4 4 3 4 4 4 4 4 4 4 4 1734300 3135700 30059 2760000 1888800 1710400 1697700 2538800 2819900 2290500 2653200 1615000 2924500 173960 2826500 1808100 1825800 1766800 2532000 2813700 2247200 2564600 3 3 3 3 3 3 3 3 3 3 3 368990000 259380000 109610000 2175 508 2037 12971;12972;12973;12974;12975;12976;12977 15578;15579;15580;15581 15580 411 4 AVVLPGR Unmodified 710.44391 0.44390889 2329 Q8WYP5;Q8WYP5-2;Q8WYP5-3 AHCTF1 Protein ELYS yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 35.484 35.979 2 0.033747 7820 20211116_3447_TMUAki_TMT10x_S_F8 77.944 37.258 583980 927560 8950.1 919870 789830 771470 656120 549290 516660 512430 730630 543810 865480 59640 936740 754510 790090 668200 568590 539310 501990 698190 2 2 2 2 2 2 2 2 2 2 2 284840 442920 5226.5 443640 506010 504780 324530 278150 248740 236300 351860 265250 413290 31584 453450 480940 505370 336330 292990 260030 232510 336240 1 1 1 1 1 1 1 1 1 1 1 299140 484640 3723.6 476230 283830 266690 331590 271140 267920 276130 378770 278560 452190 28057 483300 273570 284710 331880 275600 279280 269480 361950 1 1 1 1 1 1 1 1 1 1 1 19179000 7050800 12129000 2176 2329 2038 12978;12979;12980 15582;15583;15584 15584 3 AVVPGVKPQDWISAAR Unmodified 1692.9311 0.93113916 2886 Q9NPA0 EMC7 ER membrane protein complex subunit 7 yes yes 0 0 0 1 By MS/MS 3 0 1 1 59.791 59.534 3 0.0092638 19940 20211116_3430_TMUAki_TMT10x_P_F3 55.437 39.496 4839900 7215100 0 7573400 6266900 9160400 6042000 4273000 3798400 3961900 5366200 4505800 6733800 345800 7724500 5998400 9124300 6070900 4581800 4018000 3882200 5128100 1 1 0 1 1 1 1 1 1 1 1 4839900 7215100 0 7573400 6266900 9160400 6042000 4273000 3798400 3961900 5366200 4505800 6733800 345800 7724500 5998400 9124300 6070900 4581800 4018000 3882200 5128100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 334170000 334170000 0 2177 2886 2039 12981 15585 15585 1 AVVPSKR Unmodified 755.46537 0.46537261 545 P07910-2;P07910;P07910-3 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 28.932 28.881 3 0.0198 5540 20211116_3428_TMUAki_TMT10x_P_F1 77.282 34.256 897490 1566600 7108.5 1024200 1220800 2248400 1219900 1391700 1528200 1234300 1316500 835680 1459800 81986 1101500 1170800 2195800 1247000 1453500 1533700 1212000 1276500 3 3 1 3 3 3 3 3 3 3 3 735980 1271600 7108.5 802570 1028500 2054700 1020100 1181700 1273600 1038000 1095600 685290 1184800 68577 870610 986180 1996400 1043100 1241200 1278300 1019700 1062400 2 2 1 2 2 2 2 2 2 2 2 161510 294950 0 221630 192350 193700 199730 209980 254600 196280 220870 150380 274950 13408 230860 184600 199420 203910 212260 255420 192260 214110 1 1 0 1 1 1 1 1 1 1 1 97379000 72700000 24679000 2178 545 2040 12982;12983;12984;12985 15586;15587;15588;15589 15586 4 AVVVCPK Unmodified 771.4313 0.43129529 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 By MS/MS By MS/MS 7 0.816 2 2 2 5 1 36.031 36.313 2;3 0.0025901 7862 20211116_3434_TMUAki_TMT10x_P_F6 124.12 74.777 2370300 3828200 73570 3885400 3053800 3474800 2705900 1750400 1969000 2040000 2740800 2207500 3572300 274650 3953600 2923800 3526500 2740100 1875400 2062800 1980500 2620100 6 6 6 6 6 6 6 6 6 6 6 1789500 2762300 57835 2834100 2494000 2969300 1976400 1301200 1412100 1479000 2004600 1666700 2577800 212130 2888200 2381900 2979100 2014400 1412400 1482300 1437100 1915400 4 4 4 4 4 4 4 4 4 4 4 580770 1065900 15735 1051300 559800 505590 729500 449230 556860 561060 736280 540870 994540 62521 1065400 541980 547460 725740 462940 580430 543350 704710 2 2 2 2 2 2 2 2 2 2 2 140930000 120150000 20781000 2179 1474 2041 12986;12987;12988;12989;12990;12991 15590;15591;15592;15593;15594;15595 15590 6 AVVVCPKDEDYK Unmodified 1421.6861 0.68606601 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 1 By MS/MS 5.5 0.5 1 1 2 41.862 41.922 3 0.00087663 10270 20211116_3434_TMUAki_TMT10x_P_F6 79.492 50.859 6045200 9094300 103390 11946000 19283000 12639000 8043700 5860300 7023800 4862600 8301100 5629400 8496700 776770 11996000 18213000 12680000 8715200 6270600 7235500 4790200 7968300 3 3 2 3 3 3 3 3 3 3 3 6045200 9094300 103390 11946000 19283000 12639000 8043700 5860300 7023800 4862600 8301100 5629400 8496700 776770 11996000 18213000 12680000 8715200 6270600 7235500 4790200 7968300 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 562760000 562760000 0 2180 1474 2042 12992;12993 15596;15597;15598 15598 3 AVVVNAAQLASYSQSK Unmodified 1634.8628 0.86278482 1502 Q02978;Q02978-2 SLC25A11 Mitochondrial 2-oxoglutarate/malate carrier protein yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 60.551 60.315 3 4.1003E-15 18530 20211116_3440_TMUAki_TMT10x_S_F2 145.49 132.62 2904200 5001700 49166 4649500 4111600 3318000 2825300 7336800 5441700 5131400 5118200 2704500 4665800 303510 4748200 3913000 3552600 3014100 7190700 5410000 5102500 4947400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2904200 5001700 49166 4649500 4111600 3318000 2825300 7336800 5441700 5131400 5118200 2704500 4665800 303510 4748200 3913000 3552600 3014100 7190700 5410000 5102500 4947400 1 1 1 1 1 1 1 1 1 1 1 604790000 0 604790000 2181 1502 2043 12994;12995 15599;15600 15600 2 AVVVVDDR Unmodified 871.47633 0.47633123 2323 Q8WXF1;Q8WXF1-2 PSPC1 Paraspeckle component 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 2.8 2 2 1 1 2 2 6 4 33.403 33.422 2 0.00042871 10974 20211116_3441_TMUAki_TMT10x_S_F3 146.54 100.19 7771100 11533000 146.78 11849000 8815700 10364000 8343300 6988000 7962900 7761700 8977300 7234700 10762000 546290 12043000 8433700 10574000 8475900 7298400 8153500 7548600 8628700 10 10 1 10 10 10 10 10 10 10 10 4266700 6237800 146.78 6400100 4968900 7163000 4585100 3564400 4178300 4124600 4587700 3972000 5821100 267730 6529100 4748600 7169200 4658300 3822400 4283000 4005300 4413000 4 4 1 4 4 4 4 4 4 4 4 3504300 5294800 0 5448900 3846800 3200700 3758200 3423600 3784600 3637000 4389500 3262800 4941200 278560 5514300 3685200 3404300 3817500 3476000 3870500 3543300 4215700 6 6 0 6 6 6 6 6 6 6 6 861700000 483850000 377840000 2182 2323 2044 12996;12997;12998;12999;13000;13001;13002;13003;13004;13005 15601;15602;15603;15604;15605;15606;15607;15608;15609;15610;15611;15612 15611 12 AVVVVDDRGR Unmodified 1084.5989 0.59890598 2323 Q8WXF1;Q8WXF1-2 PSPC1 Paraspeckle component 1 yes no 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 30.896 30.748 3 5.3681E-10 9362 20211116_3441_TMUAki_TMT10x_S_F3 190.96 156.21 1384600 2104900 17007 1924100 1814200 1943800 1402300 1349600 1295900 1259100 1620700 1289300 1963400 136660 1976000 1730300 1965700 1440600 1399500 1334500 1233400 1553400 3 3 3 3 3 3 3 3 3 3 3 1133700 1674900 12759 1523900 1408600 1690500 1104300 1034600 1023100 987030 1286800 1055700 1562300 109730 1567800 1343800 1697200 1133500 1083600 1053700 965950 1233200 2 2 2 2 2 2 2 2 2 2 2 250890 430010 4248 400200 405610 253290 297980 315010 272810 272040 333910 233640 401140 26927 408180 386470 268490 307100 315880 280810 267460 320220 1 1 1 1 1 1 1 1 1 1 1 82967000 47695000 35272000 2183 2323 2045 13006;13007;13008 15613;15614;15615 15615 3 AVYCIIGR Unmodified 950.50077 0.50077184 2184 Q8N1F7;Q8N1F7-2 NUP93 Nuclear pore complex protein Nup93 yes no 0 0 0 0 By MS/MS 4.5 3.5 1 1 2 47.948 47.781 2 0.0061173 15171 20211116_3439_TMUAki_TMT10x_S_F1 86.512 43.794 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2184 2184 2046 13009;13010 15616;15617 15616 2 AVYDEQGTVDEDSPVLTQDRDWEAYWR Unmodified 3242.4429 0.44286544 2326 Q8WXX5 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 0 0 0 1 By MS/MS 1 0 1 1 73.846 73.846 3 1.3711E-08 23756 20211116_3428_TMUAki_TMT10x_P_F1 85.185 78.074 2422400 3997200 0 3477900 2718300 3710300 3752100 1285800 1062100 1500100 2633600 2255400 3727900 186930 3588200 2631200 3711000 3668600 1436100 1254000 1456300 2491900 1 1 0 1 1 1 1 1 1 1 1 2422400 3997200 0 3477900 2718300 3710300 3752100 1285800 1062100 1500100 2633600 2255400 3727900 186930 3588200 2631200 3711000 3668600 1436100 1254000 1456300 2491900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 934630000 934630000 0 2185 2326 2047 13011 15618 15618 1 AVYISVQDKEGEK Unmodified 1464.746 0.74602373 2692 Q9BVG4 PBDC1 Protein PBDC1 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 44.778 44.912 3 0.005049 11492 20211116_3444_TMUAki_TMT10x_S_F5 62.081 52.632 10638000 18290000 124150 19357000 14832000 13936000 11680000 10281000 9522000 10467000 14319000 9906400 17071000 1056400 19591000 14150000 14450000 11946000 10643000 9951700 10215000 13665000 3 3 3 3 3 3 3 3 3 3 3 3554200 5876900 29340 6234700 6790500 7817100 5536100 3637500 3537500 3886700 4621900 3309500 5485100 367340 6358800 6481300 7772000 5619200 3916700 3724700 3785700 4425000 1 1 1 1 1 1 1 1 1 1 1 7084300 12414000 94807 13122000 8041200 6119100 6144300 6643200 5984600 6580000 9697300 6596900 11586000 689090 13232000 7668400 6677500 6326700 6726000 6227000 6429000 9239700 2 2 2 2 2 2 2 2 2 2 2 222230000 104430000 117810000 2186 2692 2048 13012;13013 15619;15620;15621 15620 3 AVYTLTSLYR Unmodified 1185.6394 0.63937381 2917 Q9NR28;Q9NR28-2 DIABLO Diablo homolog, mitochondrial yes no 0 0 0 0 By MS/MS 3 0 1 1 61.263 60.996 2 7.8465E-10 20568 20211116_3430_TMUAki_TMT10x_P_F3 166.61 134.26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2187 2917 2049 13014 15622 15622 1 AWDIAIATMK Unmodified 1118.5794 0.57941609 1497 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 0 0 0 0 By MS/MS 8 0 1 1 73.909 73.941 2 1.5208E-05 23912 20211116_3436_TMUAki_TMT10x_P_F8 105.2 57.997 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2188 1497 2050 13015 15623 15623 1 AWEEYYKK Unmodified 1115.5288 0.52876073 2408;2407;2380 Q92945;Q96AE4-2;Q96AE4 KHSRP;FUBP1 Far upstream element-binding protein 2;Far upstream element-binding protein 1 no no 0 0 0 1 By MS/MS By matching 7 0 2 1 1 47.297 47.829 3 0.018307 14399 20211116_3435_TMUAki_TMT10x_P_F7 62.558 36.017 2879600 4663600 86819 5439300 12146000 6450600 5319200 2846400 2884400 2742300 4443600 2681900 4354500 449440 5509300 11480000 6428100 5677100 3072800 3096300 2682600 4238300 1 1 1 1 1 1 1 1 1 1 1 2879600 4663600 86819 5439300 12146000 6450600 5319200 2846400 2884400 2742300 4443600 2681900 4354500 449440 5509300 11480000 6428100 5677100 3072800 3096300 2682600 4238300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 253670000 214370000 39303000 2189 2380;2408;2407 2051 13016;13017 15624 15624 1 AWEVDTCR Unmodified 1035.4444 0.44437918 1207 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 By MS/MS 3 0 1 1 37.47 37.496 2 0.034281 10943 20211116_3430_TMUAki_TMT10x_P_F3 65.88 48.515 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2190 1207 2052 13018 15625 15625 1 AWGALIK Unmodified 757.44866 0.44865992 1903 Q53F19;Q53F19-2 C17orf85 Uncharacterized protein C17orf85 yes no 0 0 0 0 By MS/MS 5 0 1 1 31.763 31.703 3 0.10112 7397 20211116_3433_TMUAki_TMT10x_P_F5 29.31 4.975 566080 862020 1819.1 841020 764540 1048100 588800 404920 452160 447150 587610 527090 804270 51407 862560 728760 1040500 602200 445420 470780 434970 562660 1 1 1 1 1 1 1 1 1 1 1 566080 862020 1819.1 841020 764540 1048100 588800 404920 452160 447150 587610 527090 804270 51407 862560 728760 1040500 602200 445420 470780 434970 562660 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29643000 29643000 0 2191 1903 2053 13019 15626 15626 1 AWGPGLEGGVVGK Unmodified 1225.6455 0.64552182 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 58.429 59.053 2 6.6825E-22 19499 20211116_3446_TMUAki_TMT10x_S_F7 174.98 145.51 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2192 755 2054 13020;13021 15627;15628 15628 2 AWGPGLHGGIVGR Unmodified 1275.6836 0.68363867 328 O75369;O75369-8;O75369-6;O75369-3;O75369-2;O75369-9;O75369-5;O75369-4;O75369-7 FLNB Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 42.496 42.543 3 9.0072E-09 12644 20211116_3429_TMUAki_TMT10x_P_F2 118.9 100.74 1123500 1912900 23269 2299100 1637300 1440500 1267500 1218700 1063300 1079400 1711900 1046300 1786400 122030 2305300 1562000 1515500 1298700 1246100 1113700 1060000 1631300 2 2 2 2 2 2 2 2 2 2 2 429960 677260 2244 786370 895450 840890 649930 453110 425550 399030 634450 400350 632360 44258 795340 852570 844570 665150 478640 450160 391940 605560 1 1 1 1 1 1 1 1 1 1 1 693530 1235600 21025 1512700 741810 599620 617590 765590 637770 680410 1077400 645910 1154000 77769 1510000 709430 670910 633570 767480 663540 668040 1025800 1 1 1 1 1 1 1 1 1 1 1 63054000 32586000 30469000 2193 328 2055 13022;13023;13024 15629;15630;15631 15629 3 AWHGGCLALAELGR Unmodified 1509.7511 0.7510663 2669 Q9BTW9;Q9BTW9-4;Q9BTW9-5 TBCD Tubulin-specific chaperone D yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 53.722 53.641 3 0.00019947 15613 20211116_3436_TMUAki_TMT10x_P_F8 77.192 61.055 2873700 4959000 69946 5440200 2716300 2603400 2311900 4232200 3802300 3764200 4061500 2676200 4629100 301230 5473500 2598600 2863700 2412400 4206800 3812100 3695600 3909900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2873700 4959000 69946 5440200 2716300 2603400 2311900 4232200 3802300 3764200 4061500 2676200 4629100 301230 5473500 2598600 2863700 2412400 4206800 3812100 3695600 3909900 1 1 1 1 1 1 1 1 1 1 1 150900000 0 150900000 2194 2669 2056 13025;13026 15632;15633 15632 2 AWRDPDEPVLLEEPVVLALAEK Unmodified 2488.3213 0.32134072 669 P14550 AKR1A1 Alcohol dehydrogenase [NADP(+)] yes yes 0 0 0 1 By MS/MS By matching 1.33 0.471 2 1 1 2 79.683 79.664 3 1.3792E-14 26170 20211116_3428_TMUAki_TMT10x_P_F1 136.64 122.91 4112800 6154200 0 5888500 4480700 6181300 5434100 2140500 1692000 2646700 4553700 3829200 5741600 314910 6030400 4318200 6188300 5346300 2395400 1986600 2564000 4304200 1 1 0 1 1 1 1 1 1 1 1 4112800 6154200 0 5888500 4480700 6181300 5434100 2140500 1692000 2646700 4553700 3829200 5741600 314910 6030400 4318200 6188300 5346300 2395400 1986600 2564000 4304200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2090000000 797200000 1292800000 2195 669 2057 13027;13028;13029 15634 15634 1 AWSATFDELIGRPIGEFSR Unmodified 2151.0749 0.074902863 879 P30825 SLC7A1 High affinity cationic amino acid transporter 1 yes yes 0 0 0 1 By MS/MS 8 0 1 1 78.495 78.466 3 3.2254E-05 25176 20211116_3447_TMUAki_TMT10x_S_F8 82.482 63.407 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2196 879 2058 13030 15635 15635 1 AWTVEQLR Unmodified 1001.5294 0.52942943 1472 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 48.864 48.99 2 0.0024002 13418 20211116_3445_TMUAki_TMT10x_S_F6 110.03 75.937 4509000 7445900 14701 9898400 3699200 3088200 3255800 3927000 3947500 3603500 6680800 4198400 6956900 376190 9822900 3536800 3585000 3347100 3940700 4082600 3532700 6360100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4509000 7445900 14701 9898400 3699200 3088200 3255800 3927000 3947500 3603500 6680800 4198400 6956900 376190 9822900 3536800 3585000 3347100 3940700 4082600 3532700 6360100 1 1 1 1 1 1 1 1 1 1 1 967450000 574360000 393090000 2197 1472 2059 13031;13032;13033 15636;15637 15637 2 AWVWNTHADFADECPKPELLAIR Unmodified 2738.3275 0.32750551 1030 P43487;P43487-2 RANBP1 Ran-specific GTPase-activating protein yes no 0 0 0 1 By MS/MS By MS/MS 5.87 2.25 2 1 2 2 4 4 8 7 73.153 73.187 3;4 1.535E-27 23362 20211116_3445_TMUAki_TMT10x_S_F6 162.01 147.99 297990000 466340000 1983000 488420000 302990000 283340000 398310000 90921000 69450000 115410000 277970000 277470000 435230000 23358000 493640000 293010000 296970000 388860000 102890000 92443000 111710000 261690000 25 25 15 25 25 25 25 25 25 25 25 150210000 234660000 1520600 247930000 147970000 184610000 215290000 52188000 40839000 62197000 140480000 139870000 219010000 11511000 251050000 143650000 188990000 209450000 60043000 52717000 60333000 132440000 14 14 9 14 14 14 14 14 14 14 14 147780000 231690000 462430 240490000 155030000 98732000 183020000 38733000 28610000 53216000 137490000 137600000 216220000 11846000 242590000 149360000 107980000 179400000 42843000 39726000 51377000 129260000 11 11 6 11 11 11 11 11 11 11 11 61463000000 34439000000 27024000000 2198 1030 2060 13034;13035;13036;13037;13038;13039;13040;13041;13042;13043;13044;13045;13046;13047;13048 15638;15639;15640;15641;15642;15643;15644;15645;15646;15647;15648;15649;15650;15651;15652;15653;15654;15655;15656;15657;15658;15659;15660;15661;15662 15655 25 AYAALAALEK Unmodified 1019.5651 0.56514624 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 63.448 63.774 2 7.7598E-09 20825 20211116_3435_TMUAki_TMT10x_P_F7 176.79 124.8 20568000 36988000 522400 35983000 39787000 43105000 26451000 38860000 38066000 31064000 34391000 19155000 34510000 2461300 36886000 37846000 43378000 27887000 39491000 38087000 30660000 33289000 4 4 4 4 4 4 4 4 4 4 4 9953300 18028000 417510 17815000 25810000 33447000 16662000 20046000 19549000 15465000 17024000 9270600 16821000 1436400 18423000 24543000 32808000 17469000 20921000 19672000 15293000 16501000 2 2 2 2 2 2 2 2 2 2 2 10615000 18960000 104890 18168000 13977000 9657800 9788200 18814000 18516000 15599000 17366000 9884600 17689000 1024900 18463000 13303000 10569000 10418000 18570000 18415000 15367000 16788000 2 2 2 2 2 2 2 2 2 2 2 2682900000 1736200000 946750000 2199 1576 2061 13049;13050;13051;13052 15663;15664;15665;15666 15663 4 AYAEELASR Unmodified 1008.4876 0.4876242 1886 Q3SXM5;Q3SXM5-2 HSDL1 Inactive hydroxysteroid dehydrogenase-like protein 1 yes no 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 37.531 37.274 2 3.2315E-05 8762 20211116_3440_TMUAki_TMT10x_S_F2 116.73 79.888 696380 1197000 0 1257000 681530 612150 743390 1036900 998150 829190 1167600 648390 1117200 56549 1268500 654970 672940 758700 1026600 1010300 818390 1121100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 696380 1197000 0 1257000 681530 612150 743390 1036900 998150 829190 1167600 648390 1117200 56549 1268500 654970 672940 758700 1026600 1010300 818390 1121100 1 1 0 1 1 1 1 1 1 1 1 34057000 0 34057000 2200 1886 2062 13053;13054 15667;15668 15667 2 AYANHMINNHVPR Unmodified 1535.7416 0.74156425 2076 Q7Z3K3;Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-6;Q7Z3K3-3 POGZ Pogo transposable element with ZNF domain yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 30.41 30.443 4 0.0012297 6199 20211116_3428_TMUAki_TMT10x_P_F1 74.21 59.238 346100 551020 5235.7 489580 482640 464740 389370 347800 402090 327020 432860 322270 513930 33634 503420 460630 472350 400230 358900 409590 320240 416610 2 2 1 2 2 2 2 2 2 2 2 170500 261170 0 249820 260520 293270 191700 175280 185200 152150 209490 158740 243660 13545 256310 247950 293440 197850 183480 189550 149550 201340 1 1 0 1 1 1 1 1 1 1 1 175600 289850 5235.7 239760 222110 171470 197670 172510 216890 174860 223360 163540 270270 20089 247110 212680 178910 202370 175420 220040 170680 215270 1 1 1 1 1 1 1 1 1 1 1 12385000 7735500 4649400 2201 2076 2063 13055;13056 15669;15670 15669 2 AYANHMINNHVPR Oxidation (M) 1551.7365 0.73647887 2076 Q7Z3K3;Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-6;Q7Z3K3-3 POGZ Pogo transposable element with ZNF domain yes no 0 0 1 0 By MS/MS 1 0 1 1 27.181 27.282 3 0.033944 6876 20211116_3439_TMUAki_TMT10x_S_F1 42.031 35.127 19644 45445 0 45726 29728 28302 23057 23445 28673 20483 33921 18291 42406 0 46367 28337 29798 23911 23994 29110 20127 32560 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19644 45445 0 45726 29728 28302 23057 23445 28673 20483 33921 18291 42406 0 46367 28337 29798 23911 23994 29110 20127 32560 2 2 0 2 2 2 2 2 2 2 2 530020 0 530020 2202 2076 2063 13057 15671;15672 15671 2577 2 AYAPGGPAYQPVVEAFGTDILHK Unmodified 2400.2114 0.21139634 1589 Q13057;Q13057-2 COASY Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase yes no 0 0 0 0 By MS/MS 8 0 1 1 77.449 77.398 3 1.5108E-11 24756 20211116_3447_TMUAki_TMT10x_S_F8 116.21 102.34 6664800 11514000 272350 10683000 11104000 9108100 9437500 8175300 7430900 7568000 9312100 6207600 10741000 868550 10933000 10621000 9354900 9597900 8341000 7714200 7416300 8924800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6664800 11514000 272350 10683000 11104000 9108100 9437500 8175300 7430900 7568000 9312100 6207600 10741000 868550 10933000 10621000 9354900 9597900 8341000 7714200 7416300 8924800 2 2 2 2 2 2 2 2 2 2 2 877320000 0 877320000 2203 1589 2064 13058 15673;15674 15673 2 AYAQQLTEWAR Unmodified 1335.6571 0.65714914 3190 Q9UNF0;Q9UNF0-2 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 yes no 0 0 0 0 By MS/MS 7 0 1 1 56.406 57.14 2 0.00017064 18185 20211116_3435_TMUAki_TMT10x_P_F7 89.913 66.144 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2204 3190 2065 13059 15675 15675 1 AYCHILLGNYCVAVADAK Unmodified 2036.9812 0.98120217 3256 Q9Y2Z0;Q9Y2Z0-2 SUGT1 Suppressor of G2 allele of SKP1 homolog yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 62.743 62.611 3 3.0931E-08 21233 20211116_3439_TMUAki_TMT10x_S_F1 108.34 90.199 12028000 21201000 19732 22298000 18215000 18920000 14671000 16936000 13485000 15342000 14373000 11199000 19787000 1029600 22620000 17373000 19439000 15030000 17272000 13802000 15050000 13838000 4 4 2 4 4 4 4 4 4 4 4 3064200 5808800 0 5648000 6312300 8906800 4040400 4747000 3670100 4266100 3630400 2852600 5419600 246130 5822000 5991900 8779200 4205700 5022000 3748500 4186300 3503300 1 1 0 1 1 1 1 1 1 1 1 8964100 15393000 19732 16650000 11903000 10014000 10631000 12189000 9815200 11076000 10743000 8346400 14368000 783460 16798000 11381000 10659000 10825000 12250000 10054000 10864000 10334000 3 3 2 3 3 3 3 3 3 3 3 1447600000 938640000 509000000 2205 3256 2066 13060;13061 15676;15677;15678;15679 15678 4 AYCHILLGNYCVAVADAKK Unmodified 2165.0762 0.076165191 3256 Q9Y2Z0;Q9Y2Z0-2 SUGT1 Suppressor of G2 allele of SKP1 homolog yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 58.59 58.305 4 1.6407E-31 18941 20211116_3429_TMUAki_TMT10x_P_F2 185.61 150.7 31379000 56168000 590540 60005000 44452000 50065000 35837000 38757000 35849000 38261000 39818000 29222000 52425000 3335000 60795000 42442000 51362000 36802000 39962000 36611000 37388000 38288000 7 7 7 7 7 7 7 7 7 7 7 13129000 25253000 168440 24960000 19567000 31396000 17916000 15963000 15412000 16341000 15386000 12226000 23563000 1335600 25580000 18730000 31241000 18182000 17020000 15787000 15944000 14843000 3 3 3 3 3 3 3 3 3 3 3 18250000 30914000 422100 35044000 24885000 18669000 17921000 22795000 20437000 21920000 24432000 16996000 28862000 1999400 35214000 23712000 20122000 18620000 22942000 20823000 21444000 23445000 4 4 4 4 4 4 4 4 4 4 4 5436800000 3129200000 2307600000 2206 3256 2067 13062;13063;13064;13065 15680;15681;15682;15683;15684;15685;15686 15680 7 AYCPQIGCSHTDIR Unmodified 1676.7399 0.73990927 2518 Q96MF7 NSMCE2 E3 SUMO-protein ligase NSE2 yes yes 0 0 0 0 By MS/MS 5 0 1 1 33.735 33.912 3 0.0037033 7070 20211116_3444_TMUAki_TMT10x_S_F5 61.23 54.989 142090 201060 2841.9 274190 135270 104970 114170 157430 176120 140750 219640 132320 187890 14334 272030 129350 118550 118830 156920 178000 138160 210530 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 142090 201060 2841.9 274190 135270 104970 114170 157430 176120 140750 219640 132320 187890 14334 272030 129350 118550 118830 156920 178000 138160 210530 1 1 1 1 1 1 1 1 1 1 1 7663800 0 7663800 2207 2518 2068 13066 15687 15687 1 AYCVLVTGPNMGGK Oxidation (M) 1481.7007 0.70067022 1183 P52701;P52701-3;P52701-4 MSH6 DNA mismatch repair protein Msh6 yes no 0 0 1 0 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 51.382 51.288 3 0.00021037 16617 20211116_3439_TMUAki_TMT10x_S_F1 81.709 68.729 14221000 24821000 229710 23248000 19929000 25030000 15971000 25606000 26341000 22065000 22160000 13242000 23155000 1439700 23854000 19021000 25402000 16728000 25899000 26195000 21696000 21506000 6 6 5 6 6 6 6 6 6 6 6 6000500 9480100 93825 8547500 10197000 16180000 8157800 11809000 12460000 10296000 9141300 5587700 8842500 643700 8899900 9732100 15914000 8514600 12182000 12369000 10118000 8921000 2 2 2 2 2 2 2 2 2 2 2 8220200 15341000 135890 14700000 9731700 8849700 7813700 13797000 13881000 11769000 13018000 7654600 14312000 796050 14954000 9289000 9487500 8213900 13718000 13826000 11578000 12585000 4 4 3 4 4 4 4 4 4 4 4 638260000 252500000 385760000 2208 1183 2069 13067;13068;13069 15688;15689;15690;15691;15692;15693 15690 1594 6 AYDATHLVK Unmodified 1016.5291 0.52909508 612 P10768 ESD S-formylglutathione hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 38.165 38.215 3 0.002168 8488 20211116_3434_TMUAki_TMT10x_P_F6 77.192 40.08 3149300 4913300 45739 4988300 6315000 5223600 3881100 3079400 3501200 2942800 3916800 2932600 4584900 348060 5087100 5996700 5258800 4052300 3235100 3593200 2879700 3765500 3 3 3 3 3 3 3 3 3 3 3 2603800 3985200 43092 3990900 5654300 4724500 3197100 2330000 2716600 2315000 3089600 2424700 3718600 298760 4081900 5362500 4713900 3356500 2489400 2797900 2261600 2968900 2 2 2 2 2 2 2 2 2 2 2 545470 928160 2647.7 997360 660680 499150 684060 749390 784640 627790 827230 507910 866330 49305 1005100 634230 544860 695760 745660 795350 618140 796680 1 1 1 1 1 1 1 1 1 1 1 244940000 134490000 110450000 2209 612 2070 13070;13071;13072 15694;15695;15696 15695 3 AYDGTTYLPGIVGLNNIK Unmodified 1907.9993 0.9992783 1906 Q53GS9;Q53GS9-2;Q53GS9-3 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 77.692 77.67 3 8.6951E-13 25457 20211116_3436_TMUAki_TMT10x_P_F8 138.28 113.23 15554000 25014000 163300 23013000 18311000 21552000 19008000 14603000 14245000 16637000 18152000 14482000 23333000 1361200 23596000 17577000 21890000 19097000 15259000 14839000 16165000 17389000 3 3 2 3 3 3 3 3 3 3 3 6199600 9661600 0 8970300 6019600 11042000 7210200 5710700 5495800 6488600 6925200 5771500 9012800 392370 9231000 5794100 11001000 7198300 6098600 5716800 6305000 6636200 1 1 0 1 1 1 1 1 1 1 1 9354200 15352000 163300 14042000 12291000 10510000 11798000 8891900 8749100 10148000 11227000 8710900 14321000 968850 14365000 11783000 10889000 11898000 9160000 9122100 9859500 10753000 2 2 2 2 2 2 2 2 2 2 2 2138900000 1069800000 1069100000 2210 1906 2071 13073;13074 15697;15698;15699 15697 3 AYDYLVQNTSFANK Unmodified 1632.7784 0.77838649 848 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 By MS/MS 7 0 1 1 63.913 64.557 3 0.00072087 21219 20211116_3435_TMUAki_TMT10x_P_F7 74.769 60.863 17828000 28470000 227580 29937000 26656000 38329000 23465000 22685000 21244000 21656000 23383000 16602000 26571000 1807800 30562000 25492000 38178000 23900000 23824000 21785000 21193000 22490000 3 3 2 3 3 3 3 3 3 3 3 17828000 28470000 227580 29937000 26656000 38329000 23465000 22685000 21244000 21656000 23383000 16602000 26571000 1807800 30562000 25492000 38178000 23900000 23824000 21785000 21193000 22490000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 667970000 667970000 0 2211 848 2072 13075 15700;15701;15702 15701 3 AYEAAASALQIATHTAFVAK Unmodified 2033.0582 0.058190166 1006 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 0 0 By MS/MS By MS/MS 2.72 0.803 2 3 11 2 11 7 78.857 78.81 3;4 9.276E-65 28266 20211116_3441_TMUAki_TMT10x_S_F3 272.13 249.33 84243000 139200000 915320 136520000 100510000 132210000 98864000 92700000 85547000 96200000 105530000 78443000 129880000 7735300 139400000 96364000 134070000 99956000 96350000 88321000 93809000 101180000 14 14 9 14 14 14 14 14 14 14 14 40022000 64325000 573650 65540000 43002000 84837000 49039000 46385000 42948000 48081000 50140000 37268000 60027000 3884900 67064000 41418000 84372000 49238000 49152000 44214000 46889000 48146000 7 7 5 7 7 7 7 7 7 7 7 44222000 74877000 341670 70985000 57506000 47377000 49825000 46315000 42598000 48118000 55385000 41175000 69854000 3850500 72338000 54946000 49697000 50718000 47198000 44106000 46920000 53032000 7 7 4 7 7 7 7 7 7 7 7 26413000000 12121000000 14292000000 2212 1006 2073 13076;13077;13078;13079;13080;13081;13082;13083;13084;13085;13086;13087;13088;13089;13090;13091;13092;13093 15703;15704;15705;15706;15707;15708;15709;15710;15711;15712;15713;15714;15715;15716;15717;15718;15719;15720;15721;15722;15723 15719 21 AYEDGCK Unmodified 841.32762 0.32761808 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 30.989 30.736 2 0.027995 9344 20211116_3441_TMUAki_TMT10x_S_F3 77.674 59.639 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2213 897 2074 13094 15724 15724 1 AYEFAER Unmodified 884.40283 0.40283194 1471 Q00610;Q00610-2;P53675;P53675-2 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 36.498 36.41 2 0.001299 10121 20211116_3429_TMUAki_TMT10x_P_F2 143.56 69.365 3999200 6155700 15152 7174100 7923000 5562500 4775800 4350300 4869600 3824800 5824300 3723700 5747700 389270 7222700 7518000 5738900 5011800 4468500 4983700 3757100 5588900 5 5 3 5 5 5 5 5 5 5 5 1798000 2623500 4650.5 3114500 5683600 3620000 2217900 2002300 2186500 1705500 2640600 1674100 2449800 197650 3150200 5362200 3620300 2429900 2108500 2241800 1677900 2533200 2 2 1 2 2 2 2 2 2 2 2 2201200 3532200 10501 4059600 2239400 1942500 2558000 2348000 2683100 2119300 3183700 2049600 3297900 191620 4072600 2155800 2118600 2581900 2360000 2741900 2079300 3055700 3 3 2 3 3 3 3 3 3 3 3 201680000 91867000 109820000 2214 1471 2075 13095;13096;13097;13098;13099 15725;15726;15727;15728;15729 15726 5 AYERNELFLPGR Unmodified 1463.7521 0.75211216 1595 Q13123 IK Protein Red yes yes 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 44.384 44.499 3 4.1537E-12 11545 20211116_3445_TMUAki_TMT10x_S_F6 171.62 135.19 4297100 6998900 3492.9 7646300 9181700 8848500 5709800 6912900 6641100 5494500 6652900 4001000 6533100 417870 7772700 8716100 8896600 6002100 7083800 6715900 5424600 6417400 3 3 1 3 3 3 3 3 3 3 3 3030100 4918000 3492.9 5467700 7809200 7846900 4789000 4834400 4632700 3868700 4759000 2821300 4591100 315040 5574700 7411700 7779500 5010800 5038400 4724300 3818200 4586900 2 2 1 2 2 2 2 2 2 2 2 1267000 2080900 0 2178600 1372500 1001500 920820 2078500 2008400 1625700 1893900 1179700 1942100 102830 2198000 1304400 1117100 991310 2045400 1991600 1606400 1830500 1 1 0 1 1 1 1 1 1 1 1 335950000 229780000 106170000 2215 1595 2076 13100;13101;13102;13103 15730;15731;15732;15733;15734 15734 5 AYETMAGAGVPFSANGRPLASGIR Oxidation (M) 2408.1907 0.19067768 384 O94776;O94776-2 MTA2 Metastasis-associated protein MTA2 yes no 0 0 1 1 By MS/MS By MS/MS 1 0 2 1 1 50.415 50.279 3 2.9857E-29 16197 20211116_3439_TMUAki_TMT10x_S_F1 170.11 159.86 3664300 7391300 78544 6289600 6215700 9833200 5158400 6254900 7058500 6819800 5828500 3412100 6892800 372690 6547200 5935500 9718400 5346500 6557000 7054000 6637300 5660700 3 3 1 3 3 3 3 3 3 3 3 2665200 5306000 78544 4331000 5398200 8790500 4440600 4501300 5013000 5096400 4177900 2481900 4947500 297810 4553900 5154500 8583700 4572100 4810900 5045200 4952900 4056100 2 2 1 2 2 2 2 2 2 2 2 999070 2085300 0 1958600 817480 1042700 717830 1753500 2045500 1723400 1650700 930190 1945300 74875 1993300 780980 1134700 774440 1746100 2008800 1684400 1604600 1 1 0 1 1 1 1 1 1 1 1 1023100000 784940000 238150000 2216 384 2077 13104;13105 15735;15736;15737 15737 295 3 AYFDLQTHVIQVPQGK Unmodified 1842.9628 0.96283322 2296 Q8WUB8;Q8WUB8-2;Q8WUB8-3 PHF10 PHD finger protein 10 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 61.74 61.602 3 3.922E-15 18778 20211116_3436_TMUAki_TMT10x_P_F8 133.47 121.3 6551700 10924000 85825 10553000 7265600 9676600 6913400 8195800 8561500 7548000 8442300 6100900 10192000 633170 10779000 6962900 9878600 7082000 8388300 8633600 7398400 8147700 2 2 2 2 2 2 2 2 2 2 2 2946200 4473800 63580 4358300 3776000 6006300 3571400 3477100 3517500 3496500 3816300 2743600 4174100 315130 4479000 3619300 5960300 3631600 3663500 3591400 3414100 3672200 1 1 1 1 1 1 1 1 1 1 1 3605600 6450300 22245 6194500 3489600 3670300 3342000 4718700 5044100 4051500 4626000 3357300 6017900 318030 6299700 3343600 3918300 3450400 4724800 5042200 3984400 4475500 1 1 1 1 1 1 1 1 1 1 1 696540000 382130000 314400000 2217 2296 2078 13106;13107;13108 15738;15739;15740 15739 3 AYFHLLNQIAPK Unmodified 1413.7769 0.77687035 658 P13797;P13797-3;P13797-2;Q14651 PLS3;PLS1 Plastin-3;Plastin-1 yes no 0 0 0 0 By MS/MS By MS/MS 4.12 1.45 1 2 2 2 1 3 5 63.235 63.093 3 2.6757E-08 18861 20211116_3444_TMUAki_TMT10x_S_F5 119.53 103.94 19725000 32756000 294630 34190000 25142000 31841000 23880000 23591000 22781000 24377000 25039000 18368000 30570000 1975200 34743000 24093000 32397000 24255000 24426000 23304000 23775000 24084000 6 6 5 6 6 6 6 6 6 6 6 9715700 15786000 64195 16492000 13147000 20669000 12525000 11661000 10907000 11895000 11775000 9046700 14733000 913370 16838000 12594000 20596000 12687000 12318000 11197000 11608000 11332000 3 3 3 3 3 3 3 3 3 3 3 10010000 16970000 230430 17697000 11996000 11172000 11355000 11930000 11874000 12482000 13264000 9321800 15837000 1061800 17905000 11499000 11801000 11568000 12108000 12106000 12168000 12752000 3 3 2 3 3 3 3 3 3 3 3 3758100000 2353100000 1405000000 2218 658 2079 13109;13110;13111;13112;13113;13114;13115;13116 15741;15742;15743;15744;15745;15746;15747;15748 15747 8 AYGDRIER Unmodified 978.48829 0.4882929 672 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 27.081 26.844 3 0.00085084 7977 20211116_3441_TMUAki_TMT10x_S_F3 105.94 58.333 235200 322070 0 285310 246480 348180 211400 189420 195160 194200 294630 218970 300380 16522 294600 235250 347260 215760 200750 202780 189470 281140 1 1 0 1 1 1 1 1 1 1 1 235200 322070 0 285310 246480 348180 211400 189420 195160 194200 294630 218970 300380 16522 294600 235250 347260 215760 200750 202780 189470 281140 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8720800 8720800 0 2219 672 2080 13117;13118 15749;15750 15750 2 AYGELPEHAK Unmodified 1113.5455 0.54547343 1064 P47813;O14602 EIF1AX;EIF1AY Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal yes no 0 0 0 0 By MS/MS By MS/MS 3.33 1.25 1 1 1 1 2 33.986 33.891 3 0.0030061 6850 20211116_3444_TMUAki_TMT10x_S_F5 71.03 55.14 566530 893940 14863 1003100 993570 833990 680030 518900 584690 519940 750450 527600 834550 66801 1013100 945700 852970 703220 543510 604880 507760 718800 2 2 2 2 2 2 2 2 2 2 2 345480 537490 5112.4 613940 781460 678640 438360 347530 411130 356520 481610 321710 501820 39513 621890 740980 679930 461740 370320 421950 347820 462410 1 1 1 1 1 1 1 1 1 1 1 221050 356450 9750.2 389180 212110 155350 241670 171370 173560 163420 268830 205890 332730 27288 391220 204720 173040 241480 173190 182930 159940 256390 1 1 1 1 1 1 1 1 1 1 1 42528000 17901000 24627000 2220 1064 2081 13119;13120;13121 15751;15752 15752 2 AYGNLGNTHYLLGNFTEATTFHK Unmodified 2568.2397 0.23973636 2131 Q86YR5;Q86YR5-3;Q86YR5-4 GPSM1 G-protein-signaling modulator 1 yes no 0 0 0 0 By MS/MS 2 0 1 1 65.32 65.087 4 6.46E-05 20467 20211116_3440_TMUAki_TMT10x_S_F2 64.488 41.389 2056300 3335600 34292 3250200 2546800 1895800 2183900 1965900 2108200 2151100 2763500 1914900 3112200 209310 3301500 2434900 2016400 2231800 2000800 2171300 2093200 2645600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2056300 3335600 34292 3250200 2546800 1895800 2183900 1965900 2108200 2151100 2763500 1914900 3112200 209310 3301500 2434900 2016400 2231800 2000800 2171300 2093200 2645600 1 1 1 1 1 1 1 1 1 1 1 427320000 0 427320000 2221 2131 2082 13122 15753 15753 1 AYGPGIEPTGNMVK Oxidation (M) 1448.697 0.69696505 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 1 0 By MS/MS By MS/MS 5 0 2 1 1 43.371 43.489 3 0.00053194 10869 20211116_3444_TMUAki_TMT10x_S_F5 77.279 54.043 3217100 5447400 25286 6305500 6715400 6104600 3970000 5069100 6250700 4356000 5268800 2995500 5086200 320870 6369000 6370300 6208100 4241100 5184800 6224400 4283700 5113000 2 2 1 2 2 2 2 2 2 2 2 1596900 2774700 25286 3265800 5187200 4702000 2562200 2514000 3139400 2332600 2596900 1487000 2590900 206240 3318400 4909200 4652300 2754000 2661100 3149300 2285600 2521900 1 1 1 1 1 1 1 1 1 1 1 1620200 2672700 0 3039700 1528200 1402600 1407800 2555100 3111400 2023400 2671900 1508500 2495300 114630 3050600 1461100 1555800 1487000 2523800 3075100 1998100 2591100 1 1 0 1 1 1 1 1 1 1 1 413070000 274330000 138740000 2222 755 2083 13123;13124 15754;15755 15755 872 2 AYGTNYIETLR Unmodified 1299.6459 0.64591575 3344 Q9Y6A4 CFAP20 Cilia- and flagella-associated protein 20 yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 51.605 51.748 2 1.5447E-06 14520 20211116_3445_TMUAki_TMT10x_S_F6 132.55 97.747 13581000 21140000 73198 22991000 19149000 24323000 15321000 16779000 15034000 14705000 17293000 12646000 19733000 1272200 23344000 18270000 24527000 15732000 17378000 15387000 14448000 16612000 3 3 3 3 3 3 3 3 3 3 3 9748000 14810000 53242 15771000 15538000 21155000 12527000 11734000 10395000 10055000 12123000 9076700 13823000 938890 16102000 14826000 21008000 12798000 12355000 10730000 9889000 11641000 2 2 2 2 2 2 2 2 2 2 2 3833300 6330000 19956 7219400 3611200 3167500 2793700 5045100 4638900 4650900 5170200 3569300 5909800 333290 7241500 3443200 3519000 2933600 5022900 4657400 4558500 4971100 1 1 1 1 1 1 1 1 1 1 1 737210000 458960000 278250000 2223 3344 2084 13125;13126;13127 15756;15757;15758 15758 3 AYGVCFVDTSLGK Unmodified 1415.6755 0.67550132 1183 P52701;P52701-3;P52701-4;P52701-2 MSH6 DNA mismatch repair protein Msh6 yes no 0 0 0 0 By MS/MS 7 0 1 1 65.789 66.398 3 2.2818E-08 22016 20211116_3435_TMUAki_TMT10x_P_F7 107.97 88.128 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2224 1183 2085 13128 15759 15759 1 AYHEQLSVAEITNACFEPANQMVK Oxidation (M) 2765.2789 0.27890034 1417;2044;2007 P68363;P68363-2;P68366;P68366-2;Q71U36;Q71U36-2;P0DPH8;P0DPH7;P0DPH7-2;Q6PEY2 TUBA1B;TUBA4A;TUBA1A;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain no no 0 0 1 0 By MS/MS By MS/MS 6.62 1.25 1 1 2 8 12 27 75 33 56 103 52.568 52.669 2;3;4;5;6 8.5522E-29 18609 20211116_3431_TMUAki_TMT10x_P_F4 168.45 150.06 411170000 741170000 4333200 688610000 520250000 755630000 508350000 570230000 579280000 581530000 544590000 382860000 691400000 31492000 707210000 498660000 761020000 518460000 589470000 584980000 567490000 526420000 227 227 102 227 227 226 226 225 227 226 227 226830000 400940000 2574100 376280000 276320000 517110000 286660000 306680000 308360000 320510000 279960000 211210000 374030000 16034000 387720000 265280000 513380000 290910000 322850000 311750000 312460000 270940000 89 89 42 89 89 89 89 89 89 89 89 184340000 340230000 1759100 312330000 243940000 238520000 221680000 263550000 270910000 261020000 264630000 171640000 317370000 15458000 319490000 233380000 247640000 227550000 266620000 273230000 255030000 255470000 138 138 60 138 138 137 137 136 138 137 138 439050000000 227990000000 211060000000 2225 1417;2044;2007 2086 13129;13130;13131;13132;13133;13134;13135;13136;13137;13138;13139;13140;13141;13142;13143;13144;13145;13146;13147;13148;13149;13150;13151;13152;13153;13154;13155;13156;13157;13158;13159;13160;13161;13162;13163;13164;13165;13166;13167;13168;13169;13170;13171;13172;13173;13174;13175;13176;13177;13178;13179;13180;13181;13182;13183;13184;13185;13186;13187;13188;13189;13190;13191;13192;13193;13194;13195;13196;13197;13198;13199;13200;13201;13202;13203;13204;13205;13206;13207;13208;13209;13210;13211;13212;13213;13214;13215;13216;13217;13218;13219;13220;13221;13222;13223;13224;13225;13226;13227;13228;13229;13230;13231;13232;13233;13234;13235;13236;13237;13238;13239;13240;13241;13242;13243;13244;13245;13246;13247;13248;13249;13250;13251;13252;13253;13254;13255;13256;13257;13258;13259;13260;13261;13262;13263;13264;13265;13266;13267;13268;13269;13270;13271;13272;13273;13274;13275;13276;13277;13278;13279;13280;13281;13282;13283;13284;13285;13286;13287 15760;15761;15762;15763;15764;15765;15766;15767;15768;15769;15770;15771;15772;15773;15774;15775;15776;15777;15778;15779;15780;15781;15782;15783;15784;15785;15786;15787;15788;15789;15790;15791;15792;15793;15794;15795;15796;15797;15798;15799;15800;15801;15802;15803;15804;15805;15806;15807;15808;15809;15810;15811;15812;15813;15814;15815;15816;15817;15818;15819;15820;15821;15822;15823;15824;15825;15826;15827;15828;15829;15830;15831;15832;15833;15834;15835;15836;15837;15838;15839;15840;15841;15842;15843;15844;15845;15846;15847;15848;15849;15850;15851;15852;15853;15854;15855;15856;15857;15858;15859;15860;15861;15862;15863;15864;15865;15866;15867;15868;15869;15870;15871;15872;15873;15874;15875;15876;15877;15878;15879;15880;15881;15882;15883;15884;15885;15886;15887;15888;15889;15890;15891;15892;15893;15894;15895;15896;15897;15898;15899;15900;15901;15902;15903;15904;15905;15906;15907;15908;15909;15910;15911;15912;15913;15914;15915;15916;15917;15918;15919;15920;15921;15922;15923;15924;15925;15926;15927;15928;15929;15930;15931;15932;15933;15934;15935;15936;15937;15938;15939;15940;15941;15942;15943;15944;15945;15946;15947;15948;15949;15950;15951;15952;15953;15954;15955;15956;15957;15958;15959;15960;15961;15962;15963;15964;15965;15966;15967;15968;15969;15970;15971;15972;15973;15974;15975;15976;15977;15978;15979;15980;15981;15982;15983;15984;15985;15986;15987;15988;15989;15990 15770 1909 231 AYHEQLSVAEITNACFEPANQMVK Unmodified 2749.284 0.28398571 1417;2044;2007 P68363;P68363-2;P68366;P68366-2;Q71U36;Q71U36-2;P0DPH8;P0DPH7;P0DPH7-2;Q6PEY2 TUBA1B;TUBA4A;TUBA1A;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain no no 0 0 0 0 By MS/MS By MS/MS 5.37 1.5 1 1 3 21 13 14 18 4 51 24 65.448 65.498 2;3;4;5 1.8569E-73 21012 20211116_3433_TMUAki_TMT10x_P_F5 256.52 236.94 304450000 525840000 2862700 568060000 362210000 345710000 371450000 158340000 134590000 186240000 316410000 283480000 490820000 24845000 573210000 347560000 361690000 368960000 171280000 153740000 180740000 299600000 133 133 56 133 133 133 133 133 132 133 133 138910000 239530000 1182000 253980000 152700000 215740000 178670000 77974000 68443000 93211000 139860000 129350000 223560000 11457000 257510000 147100000 219040000 176470000 86687000 76986000 90407000 132700000 90 90 35 90 90 90 90 90 89 90 90 165540000 286310000 1680700 314080000 209500000 129980000 192770000 80367000 66151000 93026000 176560000 154130000 267260000 13388000 315700000 200460000 142650000 192490000 84594000 76756000 90333000 166900000 43 43 21 43 43 43 43 43 43 43 43 183570000000 82237000000 101330000000 2226 1417;2044;2007 2086 13288;13289;13290;13291;13292;13293;13294;13295;13296;13297;13298;13299;13300;13301;13302;13303;13304;13305;13306;13307;13308;13309;13310;13311;13312;13313;13314;13315;13316;13317;13318;13319;13320;13321;13322;13323;13324;13325;13326;13327;13328;13329;13330;13331;13332;13333;13334;13335;13336;13337;13338;13339;13340;13341;13342;13343;13344;13345;13346;13347;13348;13349;13350;13351;13352;13353;13354;13355;13356;13357;13358;13359;13360;13361;13362 15991;15992;15993;15994;15995;15996;15997;15998;15999;16000;16001;16002;16003;16004;16005;16006;16007;16008;16009;16010;16011;16012;16013;16014;16015;16016;16017;16018;16019;16020;16021;16022;16023;16024;16025;16026;16027;16028;16029;16030;16031;16032;16033;16034;16035;16036;16037;16038;16039;16040;16041;16042;16043;16044;16045;16046;16047;16048;16049;16050;16051;16052;16053;16054;16055;16056;16057;16058;16059;16060;16061;16062;16063;16064;16065;16066;16067;16068;16069;16070;16071;16072;16073;16074;16075;16076;16077;16078;16079;16080;16081;16082;16083;16084;16085;16086;16087;16088;16089;16090;16091;16092;16093;16094;16095;16096;16097;16098;16099;16100;16101;16102;16103;16104;16105;16106;16107;16108;16109;16110;16111;16112;16113;16114;16115;16116;16117;16118;16119;16120;16121;16122;16123;16124 16046 134 AYHEQLSVAEITNACFEPANQMVK Carbamidomethyl (C) 2806.3054 0.30544944 1417;2044;2007 P68363;P68363-2;P68366;P68366-2;Q71U36;Q71U36-2;P0DPH8;P0DPH7;P0DPH7-2;Q6PEY2 TUBA1B;TUBA4A;TUBA1A;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain no no 0 1 0 0 By MS/MS 6 0 1 1 53.43 53.549 4 0.0019549 15256 20211116_3445_TMUAki_TMT10x_S_F6 62.19 46.491 1632700 2778100 29580 3303600 1398300 1448700 1549300 2042100 1923800 2065800 2218800 1520400 2594300 159650 3305400 1346300 1603600 1575200 2047000 1951300 2016600 2131300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1632700 2778100 29580 3303600 1398300 1448700 1549300 2042100 1923800 2065800 2218800 1520400 2594300 159650 3305400 1346300 1603600 1575200 2047000 1951300 2016600 2131300 1 1 1 1 1 1 1 1 1 1 1 598190000 0 598190000 2227 1417;2044;2007 2086 13363 16125 16125 11 1 AYILNLVK Unmodified 932.5695 0.56950333 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 69.072 68.849 2 0.00033789 22497 20211116_3442_TMUAki_TMT10x_S_F4 185.99 143.88 31006000 52145000 204620 53414000 51393000 60283000 37340000 48984000 42464000 40938000 44916000 28870000 48662000 2964200 54504000 48931000 60735000 38769000 50133000 43063000 40313000 43253000 5 5 3 5 5 5 5 5 5 5 5 19063000 30493000 200410 31614000 36654000 49491000 26768000 29632000 25216000 25101000 27348000 17751000 28457000 1944900 32439000 34905000 48869000 27621000 30994000 25796000 24702000 26315000 3 3 2 3 3 3 3 3 3 3 3 11943000 21652000 4211.3 21800000 14739000 10793000 10572000 19352000 17249000 15836000 17569000 11120000 20205000 1019300 22064000 14027000 11866000 11148000 19138000 17267000 15611000 16938000 2 2 1 2 2 2 2 2 2 2 2 3426000000 2099600000 1326400000 2228 1147 2087 13364;13365;13366;13367;13368 16126;16127;16128;16129;16130 16130 5 AYINKVEELK Unmodified 1205.6656 0.66558856 530 P07108;P07108-5;P07108-3;P07108-2;P07108-4 DBI Acyl-CoA-binding protein yes no 0 0 0 1 By MS/MS 7 0 1 1 53 53.708 3 0.023998 16794 20211116_3435_TMUAki_TMT10x_P_F7 61.48 35.096 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2229 530 2088 13369 16131 16131 1 AYIQENLELVEK Unmodified 1447.7559 0.75586013 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.961 1 3 4 5 6 7 65.223 65.045 2;3 9.6051E-36 21038 20211116_3442_TMUAki_TMT10x_S_F4 247.3 173.14 40476000 67600000 147840 65744000 49077000 61693000 46049000 47384000 46512000 47010000 53624000 37685000 63071000 3250900 67141000 46966000 62777000 46882000 48887000 47550000 45927000 51509000 9 9 5 9 9 9 9 9 9 9 9 21240000 33802000 68073 32867000 25525000 41219000 26166000 24925000 24736000 24013000 26957000 19776000 31537000 1744600 33721000 24485000 41110000 26463000 26137000 25306000 23490000 25935000 4 4 2 4 4 4 4 4 4 4 4 19235000 33798000 79771 32878000 23552000 20474000 19883000 22458000 21776000 22997000 26668000 17909000 31534000 1506400 33420000 22481000 21667000 20419000 22750000 22244000 22438000 25574000 5 5 3 5 5 5 5 5 5 5 5 5237700000 2697000000 2540700000 2230 629 2089 13370;13371;13372;13373;13374;13375;13376;13377;13378;13379;13380;13381;13382 16132;16133;16134;16135;16136;16137;16138;16139;16140;16141;16142;16143;16144;16145 16141 14 AYKEELEGQLGPMAQETQAR Oxidation (M) 2264.0743 0.074310515 48 CON__Q03247 yes yes 0 0 1 1 By matching By MS/MS 3.6 0.49 2 3 2 3 47.499 47.521 3;4 5.9656E-09 13804 20211116_3442_TMUAki_TMT10x_S_F4 110.61 100.86 + 2320700 4093100 0 4755400 2244900 2116600 2112900 6914500 11125000 6818100 5282700 2160500 3821800 157590 4765000 2147000 2426800 2429100 6785200 10716000 6662900 5276900 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2320700 4093100 0 4755400 2244900 2116600 2112900 6914500 11125000 6818100 5282700 2160500 3821800 157590 4765000 2147000 2426800 2429100 6785200 10716000 6662900 5276900 2 2 0 2 2 2 2 2 2 2 2 1074100000 627550000 446570000 2231 48 2090 13383;13384;13385;13386;13387 16146;16147 16146 22 2 AYKTEMQDNTYPEILR Oxidation (M) 1986.9357 0.93569177 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 1 1 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 46.457 46.618 3 1.697E-07 12147 20211116_3444_TMUAki_TMT10x_S_F5 113.52 96.747 9649800 16612000 29498 19083000 16407000 18574000 10395000 21496000 23542000 17263000 16328000 8984600 15510000 858360 19286000 15578000 19019000 11265000 21582000 23119000 17034000 15974000 4 4 2 4 4 4 4 4 4 4 4 4440500 7260600 16445 8293000 12972000 14934000 7711300 9441800 9806300 7873200 7279500 4134400 6778800 468990 8486600 12304000 14680000 8161800 9830000 9794900 7754000 7100500 2 2 1 2 2 2 2 2 2 2 2 5209300 9351700 13054 10790000 3435000 3640500 2683700 12055000 13736000 9389900 9048400 4850200 8731500 389370 10799000 3273600 4338800 3103600 11752000 13324000 9280500 8873800 2 2 1 2 2 2 2 2 2 2 2 1090100000 603590000 486520000 2232 196 2091 13388;13389;13390 16148;16149;16150;16151;16152 16152 144 5 AYKTEMQDNTYPEILR Unmodified 1970.9408 0.94077715 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 52.557 52.668 3 0.014753 14557 20211116_3434_TMUAki_TMT10x_P_F6 50.252 36.84 36494000 53307000 2053700 77708000 46180000 39688000 36045000 43757000 48343000 38919000 56715000 33995000 49833000 5075200 76983000 44149000 42868000 37473000 44139000 48939000 38210000 54452000 3 3 3 3 3 3 3 3 3 3 3 5959600 8704500 181960 12031000 17173000 14813000 9369500 7119000 7694700 6553500 8357300 5550300 8134700 820730 12081000 16281000 14746000 9860100 7609400 7924800 6423800 8041500 1 1 1 1 1 1 1 1 1 1 1 30534000 44603000 1871800 65677000 29006000 24876000 26676000 36638000 40648000 32366000 48358000 28444000 41698000 4254500 64902000 27867000 28123000 27613000 36529000 41015000 31786000 46410000 2 2 2 2 2 2 2 2 2 2 2 789630000 371490000 418140000 2233 196 2091 13391;13392 16153 16153 1 AYLESEVAISEELVQK Unmodified 1806.9251 0.92511031 2903 Q9NQC3;Q9NQC3-2;Q9NQC3-5;Q9NQC3-4;Q9NQC3-6;Q9NQC3-3 RTN4 Reticulon-4 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 3 1 2 77.899 77.846 3 4.0556E-11 27346 20211116_3439_TMUAki_TMT10x_S_F1 136.17 123.19 2758100 4477200 0 4175100 3704600 3182700 3739800 2417600 2543000 2949800 3405000 2567300 4176600 140530 4265800 3546400 3286300 3754600 2512600 2670000 2859000 3258000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2758100 4477200 0 4175100 3704600 3182700 3739800 2417600 2543000 2949800 3405000 2567300 4176600 140530 4265800 3546400 3286300 3754600 2512600 2670000 2859000 3258000 1 1 0 1 1 1 1 1 1 1 1 848760000 0 848760000 2234 2903 2092 13393;13394;13395 16154;16155;16156 16155 3 AYLFAHAVDFVPSEENNLVGTLK Unmodified 2533.2853 0.28528957 1878 Q2NL82 TSR1 Pre-rRNA-processing protein TSR1 homolog yes yes 0 0 0 0 By MS/MS 8 0 1 1 78.239 78.188 3 9.9963E-05 25071 20211116_3447_TMUAki_TMT10x_S_F8 67.396 52.468 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2235 1878 2093 13396 16157 16157 1 AYLPVNESFGFTADLR Unmodified 1798.889 0.88899957 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.93 1.16 2 3 4 4 1 9 5 77.319 77.337 2;3 7.8593E-60 27144 20211116_3446_TMUAki_TMT10x_S_F7 284.32 247.13 50595000 87673000 233660 77152000 56532000 73491000 59218000 50522000 47698000 50496000 58378000 47107000 81769000 3998100 79396000 54255000 74577000 59571000 52526000 49408000 49318000 55984000 14 14 6 14 14 14 14 14 14 14 14 25150000 42028000 202440 36733000 22640000 45747000 27282000 26230000 24250000 25445000 28396000 23415000 39197000 1855300 37983000 21812000 45609000 27337000 27630000 24950000 24883000 27264000 8 8 4 8 8 8 8 8 8 8 8 25446000 45645000 31220 40418000 33892000 27744000 31936000 24292000 23448000 25051000 29982000 23692000 42572000 2142800 41413000 32443000 28968000 32234000 24896000 24458000 24435000 28720000 6 6 2 6 6 6 6 6 6 6 6 18857000000 8948800000 9908000000 2236 653 2094 13397;13398;13399;13400;13401;13402;13403;13404;13405;13406;13407;13408;13409;13410 16158;16159;16160;16161;16162;16163;16164;16165;16166;16167;16168;16169;16170;16171;16172;16173 16172 16 AYNYVAQEVDDYHAFQTLTHIYNK Unmodified 2902.3562 0.35622268 3025 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 76.764 76.818 4 2.6409E-11 26948 20211116_3446_TMUAki_TMT10x_S_F7 107.9 99.512 4895800 9493300 224090 8039000 6862000 10071000 7891000 7815200 6949100 7497200 7536000 4560200 8852800 642280 8334200 6619000 10084000 7921200 8050300 7131600 7335200 7251600 2 2 2 2 2 2 2 2 2 2 2 2638500 4739800 165090 4028000 2940400 6200600 3624800 4217900 3360600 3682300 3626700 2457900 4420100 376840 4192000 2846600 6138100 3632800 4372500 3439800 3618400 3490300 1 1 1 1 1 1 1 1 1 1 1 2257300 4753500 58995 4011000 3921600 3870400 4266200 3597300 3588500 3814900 3909300 2102200 4432700 265440 4142200 3772400 3945400 4288400 3677800 3691700 3716900 3761200 1 1 1 1 1 1 1 1 1 1 1 2087000000 1361200000 725780000 2237 3025 2095 13411;13412;13413 16174;16175 16175 2 AYPHVFTK Unmodified 961.50215 0.50215205 144 O14949 UQCRQ Cytochrome b-c1 complex subunit 8 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 39.537 39.652 3 0.0022628 9823 20211116_3436_TMUAki_TMT10x_P_F8 93.374 69.402 4540100 6719300 202490 7552700 7022400 5376600 5300500 5869000 5150200 5384500 6531700 4228800 6272900 599890 7613600 6702400 5622600 5461900 5927900 5295100 5278700 6258100 3 3 3 3 3 3 3 3 3 3 3 824580 1273300 9630.7 1472000 1748600 1483200 988780 861490 823540 811710 1017900 767840 1188800 90280 1487800 1658100 1496300 1037600 905790 851940 794810 975950 1 1 1 1 1 1 1 1 1 1 1 3715500 5446000 192860 6080700 5273800 3893400 4311700 5007500 4326700 4572800 5513700 3461000 5084100 509610 6125700 5044300 4126300 4424300 5022100 4443100 4483900 5282200 2 2 2 2 2 2 2 2 2 2 2 218800000 120810000 97991000 2238 144 2096 13414;13415;13416;13417 16176;16177 16176 2 AYPLADAHLTK Unmodified 1198.6346 0.63462279 1245 P55769 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 44.963 45.089 3 3.9088E-06 11796 20211116_3445_TMUAki_TMT10x_S_F6 117.09 93.119 4081800 6567800 72441 8123100 6657800 5609600 4497700 3787600 4027800 3404900 5404400 3801100 6134300 442000 8139500 6333900 5828800 4660600 3931400 4167000 3341200 5170800 2 2 2 2 2 2 2 2 2 2 2 1926800 3229600 48067 3796300 4881700 4096800 2770800 1836500 2046800 1839100 2551100 1794400 3015700 245930 3837300 4630700 4104300 2898500 1981400 2131800 1796100 2445400 1 1 1 1 1 1 1 1 1 1 1 2155000 3338200 24374 4326900 1776100 1512700 1726900 1951000 1981000 1565800 2853300 2006700 3118600 196080 4302200 1703200 1724500 1762100 1950000 2035200 1545100 2725500 1 1 1 1 1 1 1 1 1 1 1 765270000 568710000 196560000 2239 1245 2097 13418;13419;13420;13421 16178;16179 16179 2 AYPLADAHLTKK Unmodified 1326.7296 0.7295858 1245 P55769 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes yes 0 0 0 1 By matching By MS/MS 8 0 2 1 1 40.643 40.829 4 2.1256E-06 9872 20211116_3447_TMUAki_TMT10x_S_F8 116.24 85.366 3149000 4634800 0 5179600 3387700 2066700 2899000 1919200 1473700 2019700 3415800 2931300 4326800 175610 5199000 3230200 2294100 2922000 1961700 1630600 1968400 3235000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3149000 4634800 0 5179600 3387700 2066700 2899000 1919200 1473700 2019700 3415800 2931300 4326800 175610 5199000 3230200 2294100 2922000 1961700 1630600 1968400 3235000 1 1 0 1 1 1 1 1 1 1 1 382750000 168710000 214040000 2240 1245 2098 13422;13423 16180 16180 1 AYSDQAIVNLLK Unmodified 1333.7242 0.72416608 2350 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 3 2 1 73.005 73.249 2;3 7.1688E-15 25430 20211116_3446_TMUAki_TMT10x_S_F7 180.97 138.37 21091000 34016000 210720 30528000 24087000 39249000 24779000 29310000 28576000 28681000 27712000 19639000 31727000 1894100 31521000 23120000 39223000 25215000 30283000 28875000 28038000 26759000 4 4 3 4 4 4 4 4 4 4 4 14796000 23309000 191410 21137000 16157000 31999000 18518000 20685000 19884000 20378000 18965000 13778000 21741000 1331300 21879000 15557000 31674000 18703000 21593000 20136000 19915000 18323000 3 3 2 3 3 3 3 3 3 3 3 6294800 10707000 19311 9391000 7930200 7249800 6260500 8625100 8691900 8303200 8746600 5861200 9985800 562780 9641300 7563100 7548600 6512900 8690400 8738100 8122600 8435800 1 1 1 1 1 1 1 1 1 1 1 1666800000 895220000 771610000 2241 2350 2099 13424;13425;13426 16181;16182;16183;16184 16184 4 AYSNWPTYPQLYVK Unmodified 1728.8512 0.8511575 376 O76003 GLRX3 Glutaredoxin-3 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 72.642 72.399 3 2.4055E-06 25182 20211116_3430_TMUAki_TMT10x_P_F3 107.14 91.601 6975600 11836000 44173 10942000 9165900 10455000 9440000 6220300 5293000 5818200 8514400 6495300 11041000 650170 11219000 8798300 10586000 9432700 6526000 5680500 5699000 8113800 3 3 3 3 3 3 3 3 3 3 3 4382200 7486000 21851 6750900 5345400 8184100 6545700 4192400 3466700 3765800 5312200 4080500 6982500 397170 6960400 5156900 8159300 6481500 4451300 3727000 3695500 5067400 2 2 2 2 2 2 2 2 2 2 2 2593400 4350000 22322 4191600 3820500 2270900 2894300 2027800 1826300 2052400 3202200 2414900 4058400 253000 4258600 3641300 2426400 2951200 2074800 1953500 2003500 3046400 1 1 1 1 1 1 1 1 1 1 1 1519000000 1105100000 413920000 2242 376 2100 13427;13428;13429 16185;16186;16187 16186 3 AYSTTSIASVAGLTAAAYR Unmodified 1872.9581 0.95814177 2127 Q86Y39-2;Q86Y39 NDUFA11 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11 yes no 0 0 0 0 By MS/MS 3 0 1 1 68.993 68.71 3 2.0563E-06 23698 20211116_3430_TMUAki_TMT10x_P_F3 93.812 78.84 5258400 9723600 80160 8330200 5802500 11122000 6353300 6118500 5662600 6078900 6952800 4896700 9067900 516480 8638300 5582300 11046000 6394200 6472200 5836700 5938600 6667200 3 3 2 3 3 3 3 3 3 3 3 5258400 9723600 80160 8330200 5802500 11122000 6353300 6118500 5662600 6078900 6952800 4896700 9067900 516480 8638300 5582300 11046000 6394200 6472200 5836700 5938600 6667200 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 220690000 220690000 0 2243 2127 2101 13430 16188;16189;16190 16189 3 AYSVLQATVAAATTTPTAK Unmodified 1863.9942 0.99419293 1923 Q5PRF9 SAMD4B Protein Smaug homolog 2 yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 75.41 75.272 3 2.0876E-06 25136 20211116_3442_TMUAki_TMT10x_S_F4 93.684 75.94 4504900 8281900 68735 7624600 5732000 5476800 5091400 5063500 4603000 5174400 6186400 4194900 7725400 436490 7792600 5483000 5702600 5182800 5172400 4760300 5049100 5918800 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4504900 8281900 68735 7624600 5732000 5476800 5091400 5063500 4603000 5174400 6186400 4194900 7725400 436490 7792600 5483000 5702600 5182800 5172400 4760300 5049100 5918800 3 3 2 3 3 3 3 3 3 3 3 486580000 0 486580000 2244 1923 2102 13431;13432;13433 16191;16192;16193;16194 16193 4 AYTDELVELHRR Unmodified 1500.7685 0.76849051 1503 Q03111 MLLT1 Protein ENL yes yes 0 0 0 1 By MS/MS 5 0 1 1 37.601 37.747 4 5.8865E-06 8664 20211116_3444_TMUAki_TMT10x_S_F5 105.2 82.286 365050 562190 0 671450 309140 263340 313250 371510 399280 322230 491150 339900 524990 29354 671170 296510 295880 320190 370800 405700 316740 470950 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 365050 562190 0 671450 309140 263340 313250 371510 399280 322230 491150 339900 524990 29354 671170 296510 295880 320190 370800 405700 316740 470950 1 1 0 1 1 1 1 1 1 1 1 36949000 0 36949000 2245 1503 2103 13434 16195 16195 1 AYTGFSSNSER Unmodified 1217.5313 0.53127993 183 O15355 PPM1G Protein phosphatase 1G yes yes 0 0 0 0 By MS/MS 5 0 1 1 32.767 32.931 2 0.10034 6713 20211116_3444_TMUAki_TMT10x_S_F5 44.392 32.166 121510 238450 0 251420 137480 101400 133170 97300 93649 99212 177260 113100 222550 5657 253330 131410 112460 134090 99192 99968 96816 168410 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 121510 238450 0 251420 137480 101400 133170 97300 93649 99212 177260 113100 222550 5657 253330 131410 112460 134090 99192 99968 96816 168410 1 1 0 1 1 1 1 1 1 1 1 2666900 0 2666900 2246 183 2104 13435 16196 16196 1 AYTNFDAERDALNIETAIK Unmodified 2154.0593 0.059312378 537 P07355;P07355-2;A6NMY6 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 0 0 0 1 By MS/MS 4 0 1 1 69.574 69.397 3 1.573E-09 22837 20211116_3442_TMUAki_TMT10x_S_F4 120.75 93.598 4437800 7880000 0 6971800 7393700 5882300 6418200 6203200 6349000 5742900 6461700 4132000 7349500 404120 7160200 7064500 6066900 6559100 6277000 6466000 5627800 6229900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4437800 7880000 0 6971800 7393700 5882300 6418200 6203200 6349000 5742900 6461700 4132000 7349500 404120 7160200 7064500 6066900 6559100 6277000 6466000 5627800 6229900 1 1 0 1 1 1 1 1 1 1 1 533500000 0 533500000 2247 537 2105 13436 16197 16197 1 AYVSTLMGVPGR Oxidation (M) 1265.6438 0.64380726 81 O00303 EIF3F Eukaryotic translation initiation factor 3 subunit F yes yes 0 0 1 0 By MS/MS By MS/MS 1 0 4 2 2 46.11 45.995 2;3 1.1459E-08 12362 20211116_3428_TMUAki_TMT10x_P_F1 150.35 121.2 1996800 3338700 3293.5 4062200 4198400 4193600 2510100 3726100 4117100 2807000 3287300 1859100 3118100 189710 4095000 3982800 4253600 2684100 3784500 4088700 2779400 3196900 2 2 1 2 2 2 2 2 2 2 2 1068300 1849100 0 2155100 3407300 3485900 1896600 2040300 2335000 1530800 1811400 994650 1726500 111590 2196900 3228500 3436600 2016400 2132100 2337700 1516000 1763600 1 1 0 1 1 1 1 1 1 1 1 928420 1489600 3293.5 1907100 791100 707710 613450 1685900 1782100 1276300 1475900 864470 1391500 78118 1898100 754270 816920 667720 1652400 1751000 1263300 1433200 1 1 1 1 1 1 1 1 1 1 1 350220000 222790000 127430000 2248 81 2106 13437;13438;13439;13440 16198;16199;16200;16201 16198 48 4 AYVSTLMGVPGR Unmodified 1249.6489 0.64889264 81 O00303 EIF3F Eukaryotic translation initiation factor 3 subunit F yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 57.968 57.656 2 5.3188E-22 19217 20211116_3430_TMUAki_TMT10x_P_F3 205.83 163.64 7723300 12903000 137860 14001000 8957100 6662300 6737000 8312200 7105900 7825800 9923400 7192100 12044000 786070 14096000 8541000 7276900 6961100 8353400 7312900 7663100 9485500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7723300 12903000 137860 14001000 8957100 6662300 6737000 8312200 7105900 7825800 9923400 7192100 12044000 786070 14096000 8541000 7276900 6961100 8353400 7312900 7663100 9485500 2 2 2 2 2 2 2 2 2 2 2 697400000 0 697400000 2249 81 2106 13441;13442;13443 16202;16203;16204 16202 3 AYYEFREEAYHSR Unmodified 1719.7641 0.76413341 1874 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 0 1 By MS/MS By MS/MS 3.7 1.35 1 1 2 2 4 6 4 35.568 35.53 3;4 1.2396E-29 7586 20211116_3444_TMUAki_TMT10x_S_F5 239.19 218.54 5826300 9689300 29801 11904000 14522000 15129000 8228300 11158000 11899000 9253500 9467400 5424600 9049400 574500 12036000 13764000 15124000 8789100 11488000 11859000 9115900 9208100 10 10 4 10 10 10 10 10 10 10 10 4351100 7498600 7646.6 9008900 12804000 13752000 6839400 8515100 9162700 6988700 7213800 4051000 7002600 438380 9154800 12124000 13599000 7321300 8876200 9150700 6888400 7019200 6 6 2 6 6 6 6 6 6 6 6 1475200 2190700 22155 2894900 1718300 1377200 1389000 2642400 2736700 2264800 2253600 1373600 2046800 136120 2880800 1640000 1525000 1467800 2611400 2708000 2227500 2189000 4 4 2 4 4 4 4 4 4 4 4 1648300000 1326000000 322320000 2250 1874 2107 13444;13445;13446;13447;13448;13449;13450;13451;13452;13453 16205;16206;16207;16208;16209;16210;16211;16212;16213;16214 16213 10 CAAGLAELAAR Unmodified 1101.5601 0.56007764 1592 Q13098;Q13098-5;Q13098-7;Q13098-6 GPS1 COP9 signalosome complex subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 46.144 46.307 2 7.2495E-08 12058 20211116_3444_TMUAki_TMT10x_S_F5 141.02 114.33 2277500 3818600 26391 4207300 2082800 1727500 1797500 2846900 2448000 2591400 3171200 2120800 3564700 210690 4227600 1991500 1938000 1858300 2830400 2487600 2541500 3036800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2277500 3818600 26391 4207300 2082800 1727500 1797500 2846900 2448000 2591400 3171200 2120800 3564700 210690 4227600 1991500 1938000 1858300 2830400 2487600 2541500 3036800 1 1 1 1 1 1 1 1 1 1 1 372010000 103840000 268180000 2251 1592 2108 13454;13455;13456;13457 16215;16216 16216 2 CADYVVTGAWSAK Unmodified 1426.6551 0.65510023 3335 Q9Y617;Q9Y617-2 PSAT1 Phosphoserine aminotransferase yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 57.726 58.166 3 0.0013496 18608 20211116_3435_TMUAki_TMT10x_P_F7 70.438 54.899 59842000 96181000 655070 103790000 99343000 104940000 68963000 66064000 69187000 65809000 80844000 55722000 89776000 5833400 105360000 94511000 105960000 71548000 69124000 70790000 64283000 77626000 5 5 3 5 5 5 5 5 5 5 5 39603000 60575000 130460 65638000 79631000 85270000 48035000 43442000 45226000 42733000 51102000 36873000 56542000 3673900 66897000 75548000 84716000 50290000 46258000 46341000 41764000 49114000 3 3 1 3 3 3 3 3 3 3 3 20239000 35607000 524610 38147000 19712000 19673000 20928000 22623000 23961000 23077000 29742000 18849000 33234000 2159500 38461000 18963000 21248000 21258000 22866000 24449000 22519000 28512000 2 2 2 2 2 2 2 2 2 2 2 1235300000 786250000 449030000 2252 3335 2109 13458;13459;13460 16217;16218;16219;16220;16221 16218 5 CAEIFAR Unmodified 865.41162 0.41162248 2941 Q9NSD9;Q9NSD9-2 FARSB Phenylalanine--tRNA ligase beta subunit yes no 0 0 0 0 By MS/MS 3 0 2 2 36.705 36.713 2 0.054472 10648 20211116_3430_TMUAki_TMT10x_P_F3 66.682 31.79 93489 164600 0 155090 196410 195380 122450 107580 111750 120660 118260 87045 153550 8862.8 159490 186450 194580 127740 114210 114380 117310 113880 1 1 0 1 1 1 1 1 1 1 1 93489 164600 0 155090 196410 195380 122450 107580 111750 120660 118260 87045 153550 8862.8 159490 186450 194580 127740 114210 114380 117310 113880 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5190200 5190200 0 2253 2941 2110 13461;13462 16222;16223 16222 2 CAGNEDIITLR Unmodified 1260.6132 0.61323542 635 P12004 PCNA Proliferating cell nuclear antigen yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 45.919 45.865 2 2.9875E-24 15424 20211116_3441_TMUAki_TMT10x_S_F3 256.24 204.9 11497000 17603000 5961.7 23334000 19553000 16702000 11761000 13263000 14353000 11338000 16496000 10704000 16447000 949720 23301000 18545000 17347000 12418000 13601000 14565000 11153000 15847000 6 6 1 6 6 6 6 6 6 6 6 5744400 8480300 0 11661000 15566000 12625000 7560300 6447500 7099400 5552200 8118800 5347800 7924900 520750 11686000 14718000 12663000 8073100 6840300 7278700 5459400 7800300 3 3 0 3 3 3 3 3 3 3 3 5752700 9122600 5961.7 11673000 3987100 4077300 4201100 6815300 7253900 5785800 8377200 5356100 8521900 428980 11614000 3826900 4683700 4344700 6760400 7285800 5693100 8046400 3 3 1 3 3 3 3 3 3 3 3 1459000000 885030000 574000000 2254 635 2111 13463;13464;13465;13466;13467;13468 16224;16225;16226;16227;16228;16229 16228 6 CAHIEAK Unmodified 827.39597 0.39597242 2602 Q99733;Q99733-2 NAP1L4 Nucleosome assembly protein 1-like 4 yes no 0 0 0 0 By MS/MS 4 0 1 1 27.473 27.522 3 0.053211 5386 20211116_3431_TMUAki_TMT10x_P_F4 44.692 20.06 1014700 1662600 0 1086300 2513000 3650100 2639300 2243200 2458800 1838800 1731500 944660 1549200 87072 1187300 2411600 3528700 2665000 2339600 2483500 1812500 1692900 1 1 0 1 1 1 1 1 1 1 1 1014700 1662600 0 1086300 2513000 3650100 2639300 2243200 2458800 1838800 1731500 944660 1549200 87072 1187300 2411600 3528700 2665000 2339600 2483500 1812500 1692900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1869000 1869000 0 2255 2602 2112 13469 16230 16230 1 CAIKVEQSAER Unmodified 1289.6398 0.63978452 1391;1557 P63010;P63010-2;P63010-3;Q10567;Q10567-3;Q10567-2;Q10567-4 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 no no 0 0 0 1 By MS/MS 5 0 1 1 31.245 31.181 3 0.038347 7172 20211116_3433_TMUAki_TMT10x_P_F5 50.222 32.086 533350 850570 410.22 741290 874030 1023600 592770 545140 544110 546480 695080 496610 793260 49372 768170 831010 1014600 614470 578440 561030 533670 665850 1 1 1 1 1 1 1 1 1 1 1 533350 850570 410.22 741290 874030 1023600 592770 545140 544110 546480 695080 496610 793260 49372 768170 831010 1014600 614470 578440 561030 533670 665850 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24511000 24511000 0 2256 1391;1557 2113 13470 16231 16231 1 CANLFEALVGTLK Unmodified 1434.7541 0.754086 3055 Q9P1F3 ABRACL Costars family protein ABRACL yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 4 4 4 4 80.807 80.776 2;3 1.1479E-43 28057 20211116_3429_TMUAki_TMT10x_P_F2 280.17 218.17 27525000 44850000 267270 42250000 27989000 36246000 34019000 19403000 13861000 21407000 32654000 25630000 41840000 2490900 43196000 27002000 36917000 33568000 20638000 15650000 20825000 30918000 7 7 5 7 7 7 7 7 7 7 7 14986000 23432000 64762 22038000 13632000 22708000 16151000 10045000 7157800 11270000 17123000 13954000 21860000 1237100 22591000 13135000 22808000 15972000 10889000 8029000 10957000 16210000 3 3 1 3 3 3 3 3 3 3 3 12539000 21418000 202510 20212000 14358000 13538000 17868000 9358200 6703000 10137000 15530000 11677000 19980000 1253800 20605000 13867000 14109000 17595000 9749000 7621000 9868200 14708000 4 4 4 4 4 4 4 4 4 4 4 4323200000 2583500000 1739600000 2257 3055 2114 13471;13472;13473;13474;13475;13476;13477;13478 16232;16233;16234;16235;16236;16237;16238 16232 7 CATITPDEARVEEFK Unmodified 1764.8352 0.83524944 1083 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 1 By MS/MS 4 0 3 3 48.873 49.024 3 1.3941E-32 13968 20211116_3431_TMUAki_TMT10x_P_F4 194.23 177.01 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2258 1083 2115 13479;13480;13481 16239;16240;16241 16240 3 CAVSEAAIILNSCVEPK Unmodified 1859.9121 0.91211956 2513 Q96KR1 ZFR Zinc finger RNA-binding protein yes yes 0 0 0 0 By MS/MS By matching 8 0 2 1 1 83.329 83.334 3 0.09612 27885 20211116_3436_TMUAki_TMT10x_P_F8 25.319 5.4804 209340 313420 2090.5 303240 177100 366340 216900 210810 219450 267730 247410 194930 292420 18852 311020 170940 365810 218010 223890 224130 259140 237800 1 1 1 1 1 1 1 1 1 1 1 209340 313420 2090.5 303240 177100 366340 216900 210810 219450 267730 247410 194930 292420 18852 311020 170940 365810 218010 223890 224130 259140 237800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 61868000 44499000 17369000 2259 2513 2116 13482;13483 16242 16242 1 CCLTYCFNKPEDK Unmodified 1733.7211 0.72114766 1387 P62979 RPS27A Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a yes yes 0 0 0 1 By MS/MS By MS/MS 6.83 0.687 2 3 1 3 3 48.581 48.895 3;4 4.2858E-19 13180 20211116_3447_TMUAki_TMT10x_S_F8 184.21 165.84 86478000 136370000 551620 185010000 204760000 168440000 92421000 114470000 76377000 88085000 128050000 80520000 127430000 8885900 185050000 193510000 171410000 99124000 118320000 80236000 87115000 121920000 10 10 7 10 10 10 10 10 10 10 10 55637000 88911000 437470 118340000 181950000 152560000 75128000 74597000 49796000 57783000 81429000 51805000 83073000 6515300 119160000 171780000 151560000 81007000 79276000 52890000 57126000 77573000 5 5 3 5 5 5 5 5 5 5 5 30840000 47457000 114150 66662000 22810000 15878000 17293000 39872000 26581000 30302000 46618000 28715000 44355000 2370500 65891000 21728000 19847000 18117000 39042000 27346000 29989000 44350000 5 5 4 5 5 5 5 5 5 5 5 6754000000 4283600000 2470400000 2260 1387 2117 13484;13485;13486;13487;13488;13489 16243;16244;16245;16246;16247;16248;16249;16250;16251;16252 16252 10 CCNHPYLFPVAAMEAPK Oxidation (M) 2019.9005 0.90050901 1735 Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 1 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 50.707 50.92 3 0.00026103 15657 20211116_3435_TMUAki_TMT10x_P_F7 71.594 9.9016 2262800 4190200 11330 4149600 3731500 5246300 3163500 3672500 3029200 3334300 3288600 2107000 3909800 218730 4252600 3564400 5241500 3234400 3803300 3096800 3270400 3164400 2 2 2 2 2 2 2 2 2 2 2 1640600 3059600 10334 2930700 2755000 4411800 2517000 2473300 2158500 2389100 2321400 1527600 2854400 161260 3021100 2636300 4359500 2554400 2610000 2217400 2336800 2234300 1 1 1 1 1 1 1 1 1 1 1 622220 1130600 996.12 1218900 976510 834460 646550 1199200 870710 945230 967260 579350 1055300 57476 1231500 928090 882000 680010 1193300 879410 933630 930090 1 1 1 1 1 1 1 1 1 1 1 751230000 557550000 193680000 2261 1735 2118 13490;13491;13492 16253;16254 16253 2331 2 CCSGAIIVLTK Unmodified 1220.6257 0.62571436 670 P14618;P14618-3 PKM Pyruvate kinase PKM yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.2 4 2 2 4 5 7 55.88 55.934 2;3 2.6914E-14 16518 20211116_3436_TMUAki_TMT10x_P_F8 185.08 147.61 79152000 130910000 516550 135350000 113890000 112750000 79472000 90480000 66897000 76039000 103530000 73696000 122170000 6762200 137430000 108320000 115750000 82023000 92685000 69907000 74858000 98740000 13 13 6 13 13 13 13 13 13 13 13 40636000 65160000 199030 69636000 72928000 82456000 47979000 47351000 32846000 38885000 54006000 37835000 60818000 3765600 70915000 69296000 82421000 49503000 49661000 34829000 38326000 51443000 6 6 3 6 6 6 6 6 6 6 6 38516000 65752000 317520 65713000 40967000 30293000 31493000 43129000 34051000 37154000 49526000 35861000 61354000 2996600 66511000 39027000 33334000 32519000 43024000 35078000 36533000 47297000 7 7 3 7 7 7 7 7 7 7 7 9630400000 5887400000 3743000000 2262 670 2119 13493;13494;13495;13496;13497;13498;13499;13500;13501;13502;13503;13504 16255;16256;16257;16258;16259;16260;16261;16262;16263;16264;16265;16266;16267;16268 16260 14 CCTESLVNR Unmodified 1137.4907 0.49067744 38 CON__P02769;P02768;CON__P02768-1;P02768-2;P02768-3 ALB Serum albumin yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 31.779 31.809 2 9.9108E-05 9691 20211116_3441_TMUAki_TMT10x_S_F3 103.42 92.064 + 313370 428870 0 498030 764820 640770 449190 435920 479500 360080 426780 291710 400440 24016 505320 724870 639370 473080 451280 484610 354800 413330 1 1 0 1 1 1 1 1 1 1 1 313370 428870 0 498030 764820 640770 449190 435920 479500 360080 426780 291710 400440 24016 505320 724870 639370 473080 451280 484610 354800 413330 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14225000 14225000 0 2263 38 2120 13505;13506 16269;16270 16270 2 CCTESLVNRRPCFSALTPDETYVPK Unmodified 2999.3939 0.39394687 38 CON__P02769 yes yes 0 0 0 2 By MS/MS 8 0 1 1 55.031 54.963 4 1.2749E-22 15614 20211116_3447_TMUAki_TMT10x_S_F8 152.13 138.54 + 2093600 2983300 47360 2405500 3976000 1304300 1093900 6743200 6037900 4084300 3390800 1949700 2781600 244070 2478400 3742800 1518900 1413300 6502000 5832200 4098500 3352900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2093600 2983300 47360 2405500 3976000 1304300 1093900 6743200 6037900 4084300 3390800 1949700 2781600 244070 2478400 3742800 1518900 1413300 6502000 5832200 4098500 3352900 1 1 1 1 1 1 1 1 1 1 1 584330000 0 584330000 2264 38 2121 13507 16271 16271 1 CCTKPESER Unmodified 1165.4856 0.48559206 38 CON__P02769 yes yes 0 0 0 1 By MS/MS 3 0 1 1 25.693 25.393 3 0.019878 7295 20211116_3441_TMUAki_TMT10x_S_F3 58.37 35.837 + 45314 62203 617.85 43319 59176 34355 40613 71979 61888 52983 70910 42197 57972 4526.8 45392 56311 36397 42825 70716 62350 52528 68125 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 45314 62203 617.85 43319 59176 34355 40613 71979 61888 52983 70910 42197 57972 4526.8 45392 56311 36397 42825 70716 62350 52528 68125 1 1 1 1 1 1 1 1 1 1 1 994990 0 994990 2265 38 2122 13508 16272 16272 1 CDENILWLDYK Unmodified 1467.6704 0.67041595 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 By MS/MS By MS/MS 3.27 1.34 1 4 4 3 2 1 7 8 74.899 74.804 2;3 6.281E-14 24381 20211116_3440_TMUAki_TMT10x_S_F2 145.55 118.23 123850000 210940000 1029100 200260000 151680000 148340000 167880000 55680000 43801000 70770000 142300000 115320000 196780000 10792000 204280000 145860000 152240000 165600000 61740000 53485000 68496000 134220000 23 23 12 23 23 23 23 23 23 23 23 69456000 114780000 373020 110170000 86592000 105100000 104160000 29923000 23809000 38777000 79082000 64668000 107090000 5741400 112640000 83453000 105690000 102240000 34483000 29699000 37507000 74576000 12 12 5 12 12 12 12 12 12 12 12 54393000 96154000 656080 90092000 65092000 43242000 63726000 25757000 19992000 31993000 63221000 50648000 89700000 5051100 91636000 62405000 46549000 63357000 27257000 23786000 30989000 59649000 11 11 7 11 11 11 11 11 11 11 11 11342000000 5818900000 5523000000 2266 670;671 2123 13509;13510;13511;13512;13513;13514;13515;13516;13517;13518;13519;13520;13521;13522;13523 16273;16274;16275;16276;16277;16278;16279;16280;16281;16282;16283;16284;16285;16286;16287;16288;16289;16290;16291;16292;16293;16294;16295;16296;16297;16298 16288 26 CDEPILSNR Unmodified 1102.5077 0.50770771 867 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 0 0 0 0 By MS/MS 2 0 2 2 30.246 30.279 2 0.062889 6357 20211116_3440_TMUAki_TMT10x_S_F2 60.973 54.149 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2267 867 2124 13524;13525 16299;16300 16299 2 CDFTEDQTAEFK Acetyl (Protein N-term) 1531.6137 0.61368893 1275 P60660;P60660-2 MYL6 Myosin light polypeptide 6 yes no 1 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 62.687 62.439 2 4.7316E-13 19388 20211116_3440_TMUAki_TMT10x_S_F2 139.96 132.37 26581000 41631000 38148 49415000 29313000 35316000 25006000 30335000 31608000 30712000 33574000 24747000 38875000 1957400 49651000 27980000 36735000 25794000 31105000 31937000 29979000 32327000 5 5 1 5 5 5 5 5 5 5 5 11366000 16336000 38148 19760000 17364000 25027000 15316000 13369000 13776000 12113000 13756000 10581000 15256000 799370 19995000 16584000 24909000 15595000 14143000 14081000 11882000 13270000 2 2 1 2 2 2 2 2 2 2 2 15215000 25295000 0 29656000 11949000 10289000 9690100 16967000 17833000 18599000 19819000 14166000 23619000 1158000 29656000 11396000 11826000 10199000 16962000 17856000 18097000 19057000 3 3 0 3 3 3 3 3 3 3 3 4917600000 3049800000 1867800000 2268 1275 2125 13526;13527;13528;13529;13530;13531 16301;16302;16303;16304;16305;16306 16305 6 CDFTQMSQYFK Oxidation (M) 1469.5955 0.59553644 624 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 1 0 By MS/MS 6 0 1 1 53.48 53.579 2 0.00026074 14908 20211116_3434_TMUAki_TMT10x_P_F6 89.698 73.124 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2269 624 2126 13532 16307 16307 635 1 CDFTQMSQYFK Unmodified 1453.6006 0.60062182 624 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 0 0 By MS/MS 8 0 1 1 69.973 70.055 3 0.00020973 22348 20211116_3436_TMUAki_TMT10x_P_F8 87.667 72.977 3762400 6880100 146420 7127500 5289200 7249500 5759100 3021500 2414600 3102400 4903100 3504200 6420800 469760 7255600 5092200 7282800 5713600 3287800 2691100 3026600 4652800 1 1 1 1 1 1 1 1 1 1 1 3762400 6880100 146420 7127500 5289200 7249500 5759100 3021500 2414600 3102400 4903100 3504200 6420800 469760 7255600 5092200 7282800 5713600 3287800 2691100 3026600 4652800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 365050000 365050000 0 2270 624 2126 13533 16308 16308 1 CDSSPDSAEDVRK Unmodified 1464.6151 0.61508591 41 CON__P12763;P02765 AHSG Alpha-2-HS-glycoprotein;Alpha-2-HS-glycoprotein chain A;Alpha-2-HS-glycoprotein chain B yes no 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 29.935 29.828 3 4.4417E-23 7464 20211116_3429_TMUAki_TMT10x_P_F2 213.18 200.42 + 355420 608970 8322.5 438190 595060 778940 454010 518400 775400 450570 564440 331000 567590 40580 464190 567530 766660 477850 538190 767290 442840 551030 2 2 2 2 2 2 2 2 2 2 2 219300 358810 4785.3 280950 406160 689370 308750 322600 485160 275070 336850 204220 334510 25258 298220 387290 668850 323730 345090 480590 270610 329540 1 1 1 1 1 1 1 1 1 1 1 136130 250160 3537.2 157240 188900 89571 145260 195790 290240 175500 227590 126770 233080 15322 165970 180240 97810 154120 193100 286710 172230 221480 1 1 1 1 1 1 1 1 1 1 1 56939000 27969000 28971000 2271 41 2127 13534;13535;13536;13537 16309;16310 16309 2 CDVDIRK Unmodified 904.44365 0.44365089 1276;1406;1911 P60709;P63261;Q562R1 ACTB;ACTG1;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Beta-actin-like protein 2 no no 0 0 0 1 By MS/MS By MS/MS 3.17 1.34 1 1 1 2 1 5 1 32.301 32.223 2;3 0.0017184 7253 20211116_3431_TMUAki_TMT10x_P_F4 120.46 55.654 14656000 25169000 136430 21221000 14646000 23188000 11994000 9365900 10119000 10018000 17619000 13647000 23471000 1324700 21957000 13984000 23190000 12247000 10240000 10642000 9757600 16765000 6 6 4 6 6 6 6 6 6 6 6 10012000 16881000 90258 13426000 10440000 16826000 7431600 6507300 6896400 6584400 11694000 9322900 15739000 918000 13991000 9939600 16700000 7678900 7139200 7209600 6427500 11132000 4 4 3 4 4 4 4 4 4 4 4 4644300 8287800 46174 7795400 4206200 6361700 4562800 2858700 3222500 3433900 5925400 4324500 7731500 406720 7966000 4043900 6490600 4568100 3100500 3432900 3330000 5632300 2 2 1 2 2 2 2 2 2 2 2 1369600000 1145600000 223980000 2272 1276;1406;1911 2128 13538;13539;13540;13541;13542;13543 16311;16312;16313;16314;16315;16316 16312 6 CDYENVPTTVFTPLEYGACGLSEEK Unmodified 2878.2677 0.26772653 1871 Q16881;Q16881-3;Q16881-4;Q16881-5;Q16881-2;Q16881-6;Q16881-7 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 0 0 0 0 By MS/MS 3 0 1 1 78.457 78.387 3 1.0354E-12 28599 20211116_3441_TMUAki_TMT10x_S_F3 120.42 106.19 1054900 1894000 0 1686800 1988900 1737800 1967200 1326800 1271600 1432700 1690800 982140 1766500 86519 1736200 1905600 1758000 1975000 1372900 1338900 1394900 1618100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1054900 1894000 0 1686800 1988900 1737800 1967200 1326800 1271600 1432700 1690800 982140 1766500 86519 1736200 1905600 1758000 1975000 1372900 1338900 1394900 1618100 1 1 0 1 1 1 1 1 1 1 1 783480000 0 783480000 2273 1871 2129 13544 16317 16317 1 CEFAVGYQR Unmodified 1128.5022 0.50222841 3064 Q9P2J5;Q9P2J5-2 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 39.258 39.378 2 0.001046 10634 20211116_3442_TMUAki_TMT10x_S_F4 104.44 85.459 1522100 2513600 20955 2718000 2005900 1575100 1529300 2433300 2211100 1882000 2405800 1417400 2346200 152340 2741300 1912600 1694400 1597200 2414200 2226500 1860700 2314800 2 2 1 2 2 2 2 2 2 2 2 150380 230470 0 257520 439170 366650 207430 208620 168890 175630 231660 140020 215150 16353 262430 415260 363240 221330 219100 175730 172890 221530 1 1 0 1 1 1 1 1 1 1 1 1371800 2283100 20955 2460500 1566700 1208500 1321800 2224600 2042200 1706300 2174200 1277400 2131000 135990 2478900 1497300 1331200 1375900 2195100 2050700 1687900 2093200 1 1 1 1 1 1 1 1 1 1 1 69411000 10127000 59284000 2274 3064 2130 13545;13546 16318;16319 16319 2 CEFQDAYVLLSEK Unmodified 1600.7443 0.74430917 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3.76 1.6 2 3 4 5 4 2 1 12 9 77.417 77.383 2;3 2.7218E-23 27179 20211116_3430_TMUAki_TMT10x_P_F3 216.84 192.85 228670000 389880000 646760 359270000 265880000 312270000 269670000 184460000 184730000 204610000 275850000 212910000 363680000 18371000 367970000 254960000 318140000 270710000 194600000 194880000 199000000 263290000 22 22 8 22 22 22 22 22 22 22 22 121270000 200170000 518580 184260000 120590000 195430000 132470000 95067000 98666000 106340000 141670000 112910000 186720000 9492600 189270000 115890000 196150000 132710000 102060000 103380000 103400000 135330000 11 11 5 11 11 11 11 11 11 11 11 107400000 189710000 128180 175010000 145290000 116830000 137200000 89396000 86060000 98264000 134190000 99996000 176960000 8878000 178700000 139070000 121990000 138010000 92542000 91497000 95605000 127950000 11 11 3 11 11 11 11 11 11 11 11 28395000000 15316000000 13080000000 2275 613 2131 13547;13548;13549;13550;13551;13552;13553;13554;13555;13556;13557;13558;13559;13560;13561;13562;13563;13564;13565;13566;13567 16320;16321;16322;16323;16324;16325;16326;16327;16328;16329;16330;16331;16332;16333;16334;16335;16336;16337;16338;16339;16340;16341;16342;16343;16344 16323 25 CEFQDAYVLLSEKK Unmodified 1728.8393 0.83927219 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 6 1.41 2 2 2 2 2 5 5 70.652 70.721 3 2.0572E-06 23136 20211116_3433_TMUAki_TMT10x_P_F5 113.47 101.33 128620000 223300000 3446900 191770000 155640000 283430000 161660000 248600000 192480000 216970000 202670000 119780000 208250000 14220000 198690000 149590000 282310000 164620000 253570000 194830000 213200000 195200000 13 13 12 12 13 13 13 13 13 13 13 90434000 154950000 2142300 134200000 104870000 225760000 116360000 171200000 140560000 148300000 144720000 84219000 144510000 9662100 139740000 100970000 223120000 118180000 176140000 142090000 145780000 139480000 7 7 6 7 7 7 7 7 7 7 7 38186000 68350000 1304600 57570000 50770000 57669000 45300000 77399000 51916000 68670000 57955000 35564000 63738000 4558000 58945000 48622000 59186000 46441000 77437000 52740000 67427000 55720000 6 6 6 5 6 6 6 6 6 6 6 13464000000 7067600000 6396600000 2276 613 2132 13568;13569;13570;13571;13572;13573;13574;13575;13576;13577 16345;16346;16347;16348;16349;16350;16351;16352;16353;16354;16355;16356;16357;16358 16346 14 CEGINISGNFYR Unmodified 1428.6456 0.64559818 983 P40429 RPL13A 60S ribosomal protein L13a yes yes 0 0 0 0 By MS/MS By MS/MS 5.62 0.857 1 2 4 1 4 4 52.084 52.274 2;3 3.6946E-48 14711 20211116_3445_TMUAki_TMT10x_S_F6 298.78 250.35 24616000 43555000 0 42975000 32634000 35283000 26792000 28001000 21428000 24242000 32844000 22917000 40639000 1825900 43768000 31123000 36255000 27316000 28724000 22439000 23830000 31330000 7 7 0 7 7 7 7 7 7 7 7 13777000 24408000 0 24484000 20303000 26986000 17299000 16450000 12899000 14133000 18787000 12827000 22775000 1119900 25010000 19384000 27101000 17568000 17187000 13524000 13899000 17941000 4 4 0 4 4 4 4 4 4 4 4 10839000 19147000 0 18491000 12332000 8297000 9493100 11551000 8529700 10108000 14057000 10090000 17864000 706000 18758000 11739000 9154300 9747900 11537000 8915800 9931600 13389000 3 3 0 3 3 3 3 3 3 3 3 3923500000 2196500000 1727100000 2277 983 2133 13578;13579;13580;13581;13582;13583;13584;13585 16359;16360;16361;16362;16363;16364;16365 16364 7 CELENCQPFVVETLHGK Unmodified 2058.9503 0.95029598 1524 Q06203 PPAT Amidophosphoribosyltransferase yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 57.186 57.221 3 9.8225E-06 17814 20211116_3442_TMUAki_TMT10x_S_F4 93.768 78.839 8089700 12901000 0 13600000 9945500 10712000 8421700 8205600 7751900 7894100 10298000 7531500 12040000 595970 13782000 9491400 11035000 8601400 8460000 8005900 7722600 9855400 3 3 0 3 3 3 3 3 3 3 3 3818300 5590900 0 6277200 6179800 6910500 4808900 3608500 3367600 3399300 4399400 3554600 5219400 273600 6364800 5886100 6926700 4905000 3829200 3525700 3328500 4212000 1 1 0 1 1 1 1 1 1 1 1 4271500 7309700 0 7323100 3765700 3801500 3612700 4597100 4384300 4494800 5898700 3977000 6820800 322360 7417200 3605200 4107800 3696400 4630800 4480200 4394100 5643400 2 2 0 2 2 2 2 2 2 2 2 1006600000 685280000 321360000 2278 1524 2134 13586;13587 16366;16367;16368 16367 3 CELLYEGPPDDEAAMGIK Oxidation (M) 2022.8914 0.89144369 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 1 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 62.805 62.527 3 2.6693E-08 21154 20211116_3430_TMUAki_TMT10x_P_F3 110.04 99.386 14114000 25302000 196710 21224000 18319000 26835000 17120000 26560000 23681000 22651000 22595000 13142000 23594000 1263800 22024000 17538000 26985000 17631000 26901000 23766000 22283000 21830000 7 7 3 7 7 7 7 7 7 7 7 6189200 11006000 174490 9545500 8651600 17582000 9045500 12002000 10677000 9843800 10550000 5763800 10264000 686980 9961300 8314500 17290000 9205100 12420000 10786000 9702800 10181000 3 3 2 3 3 3 3 3 3 3 3 7925300 14296000 22221 11679000 9667800 9253200 8074100 14558000 13004000 12807000 12045000 7378400 13330000 576800 12063000 9223100 9695400 8425900 14481000 12980000 12580000 11649000 4 4 1 4 4 4 4 4 4 4 4 4009900000 1846500000 2163500000 2279 653 2135 13588;13589;13590;13591;13592;13593 16369;16370;16371;16372;16373;16374;16375;16376 16370 705 8 CELLYEGPPDDEAAMGIK Unmodified 2006.8965 0.89652907 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 By MS/MS 3 0 1 1 70.18 69.909 3 0.0084964 24204 20211116_3430_TMUAki_TMT10x_P_F3 50.188 31.824 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2280 653 2135 13594 16377 16377 1 CELSSSVQTDINLPYLTMDSSGPK Oxidation (M) 2657.22 0.22004805 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 74.1 74.124 3 1.05E-08 23414 20211116_3444_TMUAki_TMT10x_S_F5 96.303 82.142 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2281 972 2136 13595;13596 16378;16379 16379 1230 2 CESAPGCGVWQRPVIDNPNYK Unmodified 2446.1158 0.11579817 834 P27824;P27824-2;P27824-3 CANX Calnexin yes no 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 4 4 4 4 50.362 50.707 3;4 5.1797E-68 16109 20211116_3446_TMUAki_TMT10x_S_F7 251.13 229.76 52295000 95942000 520190 103060000 77257000 72428000 62918000 38077000 34793000 41216000 73683000 48694000 89551000 4983300 104180000 73736000 74902000 63699000 40542000 38007000 40125000 69875000 16 16 10 16 16 16 16 16 16 16 16 25494000 46212000 141380 49600000 53391000 53033000 40676000 19037000 16669000 19973000 35293000 23737000 43134000 2449400 50412000 50870000 53051000 41181000 21100000 18670000 19468000 33470000 9 9 3 9 9 9 9 9 9 9 9 26801000 49729000 378810 53459000 23866000 19395000 22241000 19040000 18124000 21243000 38389000 24957000 46417000 2533900 53764000 22866000 21851000 22518000 19442000 19337000 20656000 36406000 7 7 7 7 7 7 7 7 7 7 7 6195600000 3818900000 2376700000 2282 834 2137 13597;13598;13599;13600;13601;13602;13603;13604 16380;16381;16382;16383;16384;16385;16386;16387;16388;16389;16390;16391;16392;16393;16394;16395 16393 16 CEYPAACNALETLLIHR Unmodified 2029.9714 0.97136577 1229 P54886;P54886-2 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 71.005 70.934 3 3.7338E-06 22421 20211116_3445_TMUAki_TMT10x_S_F6 99.044 83.851 12002000 20649000 54191 18747000 14902000 18886000 17436000 15194000 13535000 14196000 17064000 11175000 19260000 1044400 19262000 14353000 19149000 17433000 15605000 14065000 13905000 16352000 3 3 1 3 3 3 3 3 3 3 3 7333600 12488000 54191 11455000 8337700 14117000 10560000 9403200 8631400 8658900 10482000 6828700 11649000 668940 11798000 8053500 14111000 10535000 9776200 8931000 8487400 10054000 2 2 1 2 2 2 2 2 2 2 2 4668000 8161100 0 7292800 6564000 4769300 6876800 5791200 4903500 5536600 6582100 4346000 7612000 375430 7463500 6299300 5037300 6898000 5828900 5134300 5417800 6297500 1 1 0 1 1 1 1 1 1 1 1 853690000 278910000 574780000 2283 1229 2138 13605;13606 16396;16397;16398 16398 3 CFEKNEAIQAAHDAVAQEGQCR Unmodified 2531.1282 0.12815377 588 P09936 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1 yes yes 0 0 0 1 By MS/MS 7 0 1 1 50.335 50.82 4 1.9165E-10 16200 20211116_3446_TMUAki_TMT10x_S_F7 112.45 104.55 1795500 3024000 97766 2991000 1694400 2086100 1319900 6562500 3681600 3415300 3200800 1672500 2821600 238560 3040100 1621200 2281600 1431500 6352200 3624900 3465200 3102500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1795500 3024000 97766 2991000 1694400 2086100 1319900 6562500 3681600 3415300 3200800 1672500 2821600 238560 3040100 1621200 2281600 1431500 6352200 3624900 3465200 3102500 2 2 2 2 2 2 2 2 2 2 2 371910000 0 371910000 2284 588 2139 13607 16399;16400 16399 2 CFGFVTYSNVEEADAAMAASPHAVDGNTVELK Oxidation (M) 3415.5337 0.53367105 1601 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 0 0 1 0 By MS/MS 4.5 0.5 1 1 2 70.36 70.432 4 3.8383E-07 22739 20211116_3431_TMUAki_TMT10x_P_F4 79.512 67.659 7291900 13746000 3087 11106000 7749900 18944000 9056500 10155000 9851800 9954600 10404000 6789300 12817000 596510 11634000 7462800 18618000 9142700 10763000 10007000 9730500 10020000 3 3 1 3 3 3 3 3 3 3 3 7291900 13746000 3087 11106000 7749900 18944000 9056500 10155000 9851800 9954600 10404000 6789300 12817000 596510 11634000 7462800 18618000 9142700 10763000 10007000 9730500 10020000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2153500000 2153500000 0 2285 1601 2140 13608;13609 16401;16402;16403 16401 2152 3 CFGFVTYSNVEEADAAMAASPHAVDGNTVELK Unmodified 3399.5388 0.53875643 1601 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 0 0 0 0 By MS/MS 4 0 1 1 76.694 76.626 4 0.054656 25745 20211116_3442_TMUAki_TMT10x_S_F4 34.512 28.968 2630800 5586800 212800 5206100 3696700 3747300 3930700 3413700 3238900 3768500 4324700 2451100 5211700 431360 5316200 3563300 3900000 3953400 3498300 3363800 3665900 4138300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2630800 5586800 212800 5206100 3696700 3747300 3930700 3413700 3238900 3768500 4324700 2451100 5211700 431360 5316200 3563300 3900000 3953400 3498300 3363800 3665900 4138300 1 1 1 1 1 1 1 1 1 1 1 956060000 0 956060000 2286 1601 2140 13610 16404 16404 1 CFIEEIPDETMVIGNYR Oxidation (M) 2100.9496 0.94962727 2696 Q9BVK6;Q7Z7H5;Q7Z7H5-3;Q7Z7H5-2 TMED9;TMED4 Transmembrane emp24 domain-containing protein 9;Transmembrane emp24 domain-containing protein 4 yes no 0 0 1 0 By MS/MS 2 0 1 1 74.291 74.146 3 0.03013 25485 20211116_3429_TMUAki_TMT10x_P_F2 40.085 23.146 2624800 4372500 75290 3815500 2704300 5505900 3551100 3234300 3054600 3376800 3254500 2444500 4078000 288890 3957000 2618800 5453700 3542300 3407300 3136400 3292100 3133300 1 1 1 1 1 1 1 1 1 1 1 2624800 4372500 75290 3815500 2704300 5505900 3551100 3234300 3054600 3376800 3254500 2444500 4078000 288890 3957000 2618800 5453700 3542300 3407300 3136400 3292100 3133300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 448380000 448380000 0 2287 2696 2141 13611 16405 16405 2898 1 CFIVGADNVGSK Unmodified 1265.6074 0.60742176 508 P05388;P05388-2;Q8NHW5 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 0 0 0 0 By MS/MS By MS/MS 6.09 0.793 3 4 4 6 5 52.355 52.636 2;3 4.3556E-24 14858 20211116_3445_TMUAki_TMT10x_S_F6 248.09 203.01 34411000 57119000 331140 64466000 52026000 50663000 38657000 46906000 42573000 39612000 51303000 32041000 53326000 3287200 65041000 49561000 52379000 40032000 47662000 43449000 38987000 49220000 8 8 4 8 8 8 8 8 8 8 8 14124000 23962000 277990 26212000 33986000 35335000 21844000 19100000 17261000 16160000 21574000 13153000 22367000 1708200 26718000 32299000 35069000 22651000 20151000 17913000 15904000 20678000 3 3 3 3 3 3 3 3 3 3 3 20287000 33157000 53150 38255000 18039000 15327000 16813000 27807000 25313000 23451000 29729000 18889000 30958000 1579000 38323000 17261000 17309000 17381000 27512000 25536000 23083000 28541000 5 5 1 5 5 5 5 5 5 5 5 2844100000 1281500000 1562600000 2288 508 2142 13612;13613;13614;13615;13616;13617;13618;13619;13620;13621;13622 16406;16407;16408;16409;16410;16411;16412;16413;16414;16415 16413 10 CFNTLTNSFQPSLLGR Unmodified 1853.9094 0.90941744 1242 P55265;P55265-5;P55265-4;P55265-3;P55265-2 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 0 0 By MS/MS By matching 4 0 2 1 1 72.601 72.562 3 4.529E-15 23621 20211116_3431_TMUAki_TMT10x_P_F4 143.93 119.14 3188700 4876100 54908 4816300 3611400 6822900 3913800 4154700 3245900 3674500 4102700 2969400 4549700 321460 4947700 3473700 6767000 3933500 4344500 3361800 3608500 3931200 1 1 1 1 1 1 1 1 1 1 1 3188700 4876100 54908 4816300 3611400 6822900 3913800 4154700 3245900 3674500 4102700 2969400 4549700 321460 4947700 3473700 6767000 3933500 4344500 3361800 3608500 3931200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 759760000 493250000 266510000 2289 1242 2143 13623;13624 16416 16416 1 CFRDHFFDR Unmodified 1298.5615 0.56147462 244 O43776 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 0 0 0 1 By MS/MS 6.5 0.5 2 2 4 35.89 36.101 3;4 0.00098787 7936 20211116_3434_TMUAki_TMT10x_P_F6 92.611 70.137 589170 879000 21994 997840 1110800 1209000 739640 732740 626310 697760 781740 548740 820650 76650 1012700 1057100 1207900 766140 767990 647630 682910 749300 4 4 4 4 4 4 4 4 4 4 4 589170 879000 21994 997840 1110800 1209000 739640 732740 626310 697760 781740 548740 820650 76650 1012700 1057100 1207900 766140 767990 647630 682910 749300 4 4 4 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 46262000 46262000 0 2290 244 2144 13625;13626;13627;13628 16417;16418;16419;16420 16418 4 CFSIDNPGYEPEVVAVHPGGDTVAIGGVDGNVR Unmodified 3396.6045 0.60446823 307 O75083;O75083-3 WDR1 WD repeat-containing protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 69.418 69.236 3;4 5.6904E-28 24996 20211116_3441_TMUAki_TMT10x_S_F3 152 147.71 2878500 5447600 44951 5573100 3436500 5923100 3673900 3828200 3459500 3359500 4159200 2680500 5083700 163480 5681800 3303300 5965400 3707500 3984000 3553700 3300300 3990500 3 3 1 3 3 3 3 3 3 3 3 2518500 4744700 44951 4958900 2932100 5535600 3214900 3440100 3186000 3017300 3634600 2345300 4428100 138850 5052400 2821300 5556700 3245400 3590800 3258400 2964300 3492300 2 2 1 2 2 2 2 2 2 2 2 360030 702920 0 614160 504380 387440 458940 388150 273570 342140 524580 335170 655570 24624 629420 482010 408700 462160 393230 295330 336050 498270 1 1 0 1 1 1 1 1 1 1 1 1213500000 967060000 246460000 2291 307 2145 13629;13630 16421;16422;16423 16423 3 CFSVLGFCK Unmodified 1116.5096 0.50962197 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 By MS/MS 3 0 1 1 68.416 67.959 2 0.018805 24478 20211116_3441_TMUAki_TMT10x_S_F3 66.351 37.608 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2292 648 2146 13631 16424 16424 1 CGAALAGHQLIR Unmodified 1265.6663 0.66627404 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 34.193 34.188 3 2.3453E-12 9575 20211116_3439_TMUAki_TMT10x_S_F1 173.24 136.39 1056000 1530600 1340.2 1695700 1666200 1519000 1182000 949510 916650 975500 1276200 983270 1428900 95514 1715600 1585400 1545600 1216100 994910 956910 951650 1219900 2 2 1 2 2 2 2 2 2 2 2 559210 801940 1340.2 862830 1201700 1152800 727880 591540 574620 616000 656250 520690 748520 56609 880270 1140400 1143900 758350 630490 594180 600610 630530 1 1 1 1 1 1 1 1 1 1 1 496830 728690 0 832840 464510 366260 454150 357970 342030 359500 619920 462580 680340 38905 835300 445020 401710 457740 364420 362730 351040 589410 1 1 0 1 1 1 1 1 1 1 1 147570000 63038000 84531000 2293 1433 2147 13632;13633 16425;16426 16426 2 CGEDYKLHFIFR Unmodified 1583.7555 0.75548298 834;148 P27824;P27824-2;P27824-3;O14967 CANX;CLGN Calnexin;Calmegin no no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 53.511 53.757 4 7.2974E-12 15709 20211116_3436_TMUAki_TMT10x_P_F8 167.71 163.32 2781400 5615700 18383 3817500 5926000 9631900 5358700 9352500 7434500 7322900 5816800 2589400 5233300 232420 4108400 5665100 9447400 5529500 9462400 7415100 7235600 5661400 3 3 1 3 3 3 3 3 3 3 3 2066400 3919100 0 2692700 3865700 7660600 4457400 6547400 5109200 5182600 4060900 1923500 3652300 137160 2907900 3717600 7472600 4510600 6672300 5132000 5117800 3949800 2 2 0 2 2 2 2 2 2 2 2 715060 1696600 18383 1124800 2060300 1971400 901320 2805100 2325300 2140300 1756000 665930 1581000 95256 1200500 1947500 1974800 1018900 2790100 2283100 2117700 1711500 1 1 1 1 1 1 1 1 1 1 1 1550700000 958780000 591930000 2294 834;148 2148 13634;13635;13636 16427;16428;16429 16428 3 CGEEIAVQFVDMVK Oxidation (M) 1639.7586 0.75857903 201 O43175 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 0 0 1 0 By MS/MS By MS/MS 3.29 1.03 2 2 2 1 3 4 76.107 76.044 3 2.4756E-06 24964 20211116_3431_TMUAki_TMT10x_P_F4 106.58 93.947 13393000 25022000 209680 20017000 18328000 27595000 19278000 22796000 21920000 21379000 22208000 12471000 23330000 1289900 20888000 17604000 27537000 19587000 23378000 22194000 20938000 21414000 7 7 5 7 7 7 7 7 7 7 7 6126600 11305000 63783 9163500 7410900 16381000 9479400 11034000 10614000 9893000 10645000 5704300 10541000 500400 9607500 7156200 16122000 9542300 11454000 10749000 9709000 10268000 3 3 1 3 3 3 3 3 3 3 3 7266600 13717000 145900 10854000 10917000 11215000 9799000 11763000 11306000 11486000 11563000 6767000 12789000 789550 11280000 10448000 11415000 10045000 11923000 11445000 11229000 11146000 4 4 4 4 4 4 4 4 4 4 4 3199800000 1440500000 1759200000 2295 201 2149 13637;13638;13639;13640;13641;13642;13643 16430;16431;16432;16433;16434;16435;16436 16432 159 7 CGFCHVGEEENEAR Unmodified 1692.6621 0.66205288 2146 Q8IWS0;Q8IWS0-5;Q8IWS0-3;Q8IWS0-2;Q8IWS0-4 PHF6 PHD finger protein 6 yes no 0 0 0 0 By MS/MS 1.5 0.5 1 1 2 31.008 30.781 3 6.0919E-19 7865 20211116_3429_TMUAki_TMT10x_P_F2 160.48 148.56 119090 196140 2205.1 210220 322160 251610 155000 138500 131760 99225 183740 110900 183070 14773 214080 304840 251230 165240 145350 136900 98526 175640 1 1 1 1 1 1 1 1 1 1 1 119090 196140 2205.1 210220 322160 251610 155000 138500 131760 99225 183740 110900 183070 14773 214080 304840 251230 165240 145350 136900 98526 175640 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30110000 30110000 0 2296 2146 2150 13644;13645 16437;16438 16438 2 CGLVIGR Unmodified 773.42179 0.42179324 2380 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 35.978 36.295 2 0.0067319 7905 20211116_3447_TMUAki_TMT10x_S_F8 102.12 53.361 2590400 4101200 17756 3997100 3648600 3778700 2879300 2173200 2000400 2061100 3106200 2412100 3826500 244600 4081800 3480100 3826900 2933600 2287300 2112800 2017600 2962200 4 4 3 4 4 4 4 4 4 4 4 1999500 3157800 8269.7 3029600 2960900 3259700 2197200 1649900 1495000 1558400 2369800 1861700 2946100 185400 3103200 2820200 3270400 2246900 1756000 1582700 1525800 2259000 3 3 2 3 3 3 3 3 3 3 3 590980 943390 9486.4 967490 687710 519040 682120 523320 505380 502710 736390 550330 880370 59192 978590 659840 556520 686720 531250 530070 491830 703210 1 1 1 1 1 1 1 1 1 1 1 204760000 132230000 72533000 2297 2380 2151 13646;13647;13648;13649 16439;16440;16441;16442 16442 4 CGSVLVR Unmodified 789.41671 0.41670786 687 P15880 RPS2 40S ribosomal protein S2 yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 31.858 31.843 2 0.020668 7424 20211116_3433_TMUAki_TMT10x_P_F5 87.284 57.442 2562000 4428600 34937 4125100 3849900 4173400 2740700 1880300 1925200 1924800 3002200 2385800 4131200 263010 4230400 3665700 4197100 2812800 2028900 2032400 1878000 2862700 2 2 2 2 2 2 2 2 2 2 2 2562000 4428600 34937 4125100 3849900 4173400 2740700 1880300 1925200 1924800 3002200 2385800 4131200 263010 4230400 3665700 4197100 2812800 2028900 2032400 1878000 2862700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 45883000 45883000 0 2298 687 2153 13650;13651 16443 16443 1 CGVISPR Unmodified 787.40106 0.4010578 1339 P62244 RPS15A 40S ribosomal protein S15a yes yes 0 0 0 0 By MS/MS 5 0 1 1 30.44 30.373 2 0.0158 6867 20211116_3433_TMUAki_TMT10x_P_F5 92.467 66.295 540080 997770 9677.1 856200 965480 1074300 700510 546650 540090 464890 766280 502940 930500 59753 886730 919670 1069100 719450 579980 564500 457410 732200 1 1 1 1 1 1 1 1 1 1 1 540080 997770 9677.1 856200 965480 1074300 700510 546650 540090 464890 766280 502940 930500 59753 886730 919670 1069100 719450 579980 564500 457410 732200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26581000 26581000 0 2299 1339 2154 13652 16444 16444 1 CGVQSFYTPR Unmodified 1213.555 0.55499226 2098 Q7Z7K6-3;Q7Z7K6;Q7Z7K6-2 CENPV Centromere protein V yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 41.642 41.857 2 1.1957E-08 10269 20211116_3447_TMUAki_TMT10x_S_F8 132.22 93.982 520100 825450 0 817730 1508300 1701000 870590 1108600 978240 830290 918790 484150 770210 43329 847980 1429300 1665100 919750 1148700 988370 822370 888160 1 1 0 1 1 1 1 1 1 1 1 520100 825450 0 817730 1508300 1701000 870590 1108600 978240 830290 918790 484150 770210 43329 847980 1429300 1665100 919750 1148700 988370 822370 888160 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 70641000 70641000 0 2300 2098 2155 13653;13654 16445;16446 16446 2 CGYAGSNFPEHIFPALVGRPIIR Unmodified 2570.3216 0.32163227 1297 P61160;P61160-2 ACTR2 Actin-related protein 2 yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 65.933 65.87 4 7.19E-13 20056 20211116_3444_TMUAki_TMT10x_S_F5 121.44 105.49 9490300 17123000 41390 15360000 14234000 10921000 11241000 11707000 10461000 10714000 12476000 8836200 15971000 827340 15727000 13571000 11417000 11534000 11833000 10748000 10505000 11973000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9490300 17123000 41390 15360000 14234000 10921000 11241000 11707000 10461000 10714000 12476000 8836200 15971000 827340 15727000 13571000 11417000 11534000 11833000 10748000 10505000 11973000 3 3 1 3 3 3 3 3 3 3 3 1544500000 0 1544500000 2301 1297 2156 13655;13656 16447;16448;16449 16449 3 CHEDNVVVAVDSTTNR Unmodified 1814.8217 0.82172464 1599 Q13144 EIF2B5 Translation initiation factor eIF-2B subunit epsilon yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 34.169 33.938 3 2.4756E-29 10580 20211116_3441_TMUAki_TMT10x_S_F3 191.89 178.47 347440 581500 11588 692210 649120 548560 428640 420950 505660 341500 521680 323560 543020 40719 696200 617370 564830 448700 432050 511620 336800 502750 2 2 1 2 2 2 2 2 2 2 2 206140 310830 11588 396540 493370 430860 278840 233400 303980 184420 284270 192030 290360 31913 398990 468380 432380 294830 245800 307450 182130 274840 1 1 1 1 1 1 1 1 1 1 1 141300 270670 0 295670 155750 117700 149800 187550 201680 157080 237410 131530 252660 8805.5 297210 148990 132460 153870 186250 204180 154670 227910 1 1 0 1 1 1 1 1 1 1 1 103680000 67825000 35853000 2302 1599 2157 13657;13658 16450;16451 16451 2 CHGVPLVTISR Unmodified 1237.6601 0.66012603 2617 Q9BPU6 DPYSL5 Dihydropyrimidinase-related protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 32.63 32.644 3 0.03139 8729 20211116_3428_TMUAki_TMT10x_P_F1 47.724 23.738 6060200 9077300 40772 9721800 7230500 6914500 5954500 5042900 5108100 5066600 7645100 5642800 8472500 535000 9830300 6901900 7175100 6080500 5222400 5323700 4947300 7296400 3 3 2 3 3 3 3 3 3 3 3 2782000 3875900 10097 4359600 4505700 4418500 2912100 2380300 2341600 2340100 3809200 2590200 3618400 242380 4414200 4279400 4451800 3019600 2521800 2459200 2287100 3629200 2 2 1 2 2 2 2 2 2 2 2 3278200 5201400 30675 5362200 2724800 2496000 3042400 2662500 2766500 2726500 3835900 3052600 4854000 292620 5416100 2622500 2723300 3060900 2700600 2864500 2660200 3667200 1 1 1 1 1 1 1 1 1 1 1 331690000 190660000 141030000 2303 2617 2158 13659;13660;13661 16452;16453;16454 16452 3 CHTPPLYR Unmodified 1042.5018 0.50183447 1495 Q02543 RPL18A 60S ribosomal protein L18a yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 28.992 28.82 3 0.0024524 6177 20211116_3433_TMUAki_TMT10x_P_F5 91.9 78.229 324030 556390 8388.9 471990 441690 526010 385790 328510 356560 333230 405020 301770 518850 36330 488270 422620 528100 393340 344120 365730 325250 389210 2 2 2 2 2 2 2 2 2 2 2 250460 403000 6840.9 345370 343210 436270 287800 234920 247320 241040 275840 233260 375820 28440 357770 328110 434310 293570 249190 254390 235160 265210 1 1 1 1 1 1 1 1 1 1 1 73565 153390 1548 126610 98481 89742 97989 93594 109240 92187 129180 68508 143030 7890.7 130510 94510 93784 99769 94923 111350 90093 124000 1 1 1 1 1 1 1 1 1 1 1 34244000 23297000 10947000 2304 1495 2159 13662;13663;13664 16455;16456;16457 16456 3 CIALAQLLVEQNFPAIAIHR Unmodified 2276.2463 0.24634206 1665 Q13838;Q13838-2 DDX39B Spliceosome RNA helicase DDX39B yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 79.747 79.759 3 1.6798E-41 25700 20211116_3444_TMUAki_TMT10x_S_F5 202.41 183.34 2718400 4372900 25942 4407200 3934700 4019600 3655300 3007500 2692700 2824000 3832900 2531300 4080500 266590 4487900 3767300 4096000 3692600 3103400 2821900 2765700 3662200 3 3 3 3 3 3 3 3 3 3 3 945660 1441700 2396.8 1601800 988780 1901700 1264500 991230 1107600 1015200 1363600 880520 1345900 81240 1627300 955170 1898400 1263400 1054500 1142700 990470 1307500 1 1 1 1 1 1 1 1 1 1 1 1772800 2931200 23545 2805400 2945900 2117900 2390800 2016300 1585100 1808900 2469300 1650800 2734700 185350 2860600 2812100 2197700 2429200 2048900 1679200 1775200 2354700 2 2 2 2 2 2 2 2 2 2 2 1749100000 961010000 788100000 2305 1665 2160 13665;13666 16458;16459;16460 16459 3 CIAVGESDGSIWNPDGIDPK Unmodified 2128.9735 0.97353384 463 P00367;P00367-3;P00367-2;P49448 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 0 0 0 0 By MS/MS 4 0 1 1 71.568 71.409 3 0.0019035 23651 20211116_3442_TMUAki_TMT10x_S_F4 59.372 41.883 3990900 5794700 21306 5281300 4757900 3368300 4202100 3465300 3181100 3484900 4650900 3716100 5405100 361470 5395500 4549400 3551500 4259800 3519000 3333100 3402700 4441000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3990900 5794700 21306 5281300 4757900 3368300 4202100 3465300 3181100 3484900 4650900 3716100 5405100 361470 5395500 4549400 3551500 4259800 3519000 3333100 3402700 4441000 1 1 1 1 1 1 1 1 1 1 1 617480000 0 617480000 2306 463 2161 13667 16461 16461 1 CIIVEEGK Unmodified 946.47937 0.4793677 1282 P60981;P60981-2 DSTN Destrin yes no 0 0 0 0 By MS/MS 4 0 1 1 43.34 43.555 2 0.0020921 12158 20211116_3442_TMUAki_TMT10x_S_F4 128.1 65.258 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2307 1282 2162 13668 16462 16462 1 CILDLAHQWGEFK Unmodified 1615.7817 0.78169773 1223 P54687;P54687-5;P54687-3;P54687-4;P54687-2 BCAT1 Branched-chain-amino-acid aminotransferase, cytosolic yes no 0 0 0 0 By MS/MS 7 0 1 1 75.337 75.444 3 0.0012422 26648 20211116_3446_TMUAki_TMT10x_S_F7 71.558 42.779 3778200 6033000 0 5480200 4904200 3998900 4883000 3292100 2886200 3349900 4573400 3517400 5627400 273070 5607600 4698200 4149300 4892300 3384600 3083500 3269300 4359600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3778200 6033000 0 5480200 4904200 3998900 4883000 3292100 2886200 3349900 4573400 3517400 5627400 273070 5607600 4698200 4149300 4892300 3384600 3083500 3269300 4359600 1 1 0 1 1 1 1 1 1 1 1 5578900000 0 5578900000 2308 1223 2163 13669 16463 16463 1 CILQDGR Unmodified 860.41744 0.41743614 674 P14678;P63162;P14678-2;P14678-3;P63162-2 SNRPB;SNRPN Small nuclear ribonucleoprotein-associated proteins B and B';Small nuclear ribonucleoprotein-associated protein N yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 33.647 33.408 2 0.023661 10403 20211116_3441_TMUAki_TMT10x_S_F3 84.097 39.566 406590 684810 3787.9 674240 423240 341310 470010 440970 414040 370790 559460 378600 638960 37472 683600 407230 370480 472570 441220 428820 365020 535190 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 406590 684810 3787.9 674240 423240 341310 470010 440970 414040 370790 559460 378600 638960 37472 683600 407230 370480 472570 441220 428820 365020 535190 1 1 1 1 1 1 1 1 1 1 1 10365000 0 10365000 2309 674 2164 13670;13671 16464;16465 16465 2 CIPALDSLTPANEDQK Unmodified 1770.8458 0.84581413 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4.62 1 2 4 4 3 7 6 63.393 63.36 2;3 9.3642E-60 19844 20211116_3431_TMUAki_TMT10x_P_F4 281.99 244.56 108080000 180460000 1471200 192840000 141930000 177280000 120050000 130060000 114700000 119550000 140970000 100640000 168440000 10382000 195620000 135600000 180500000 122750000 134310000 117860000 117190000 135170000 25 25 13 25 25 25 25 25 25 25 25 67478000 109870000 862370 116970000 99883000 140570000 85953000 79644000 72028000 72855000 86093000 62834000 102550000 6664600 119180000 95462000 140380000 87483000 83848000 74384000 71434000 82615000 15 15 8 15 15 15 15 15 15 15 15 40600000 70592000 608830 75867000 42045000 36713000 34096000 50421000 42677000 46690000 54873000 37806000 65889000 3717300 76439000 40137000 40124000 35266000 50461000 43474000 45754000 52556000 10 10 5 10 10 10 10 10 10 10 10 10994000000 6086600000 4907700000 2310 613 2165 13672;13673;13674;13675;13676;13677;13678;13679;13680;13681;13682;13683;13684 16466;16467;16468;16469;16470;16471;16472;16473;16474;16475;16476;16477;16478;16479;16480;16481;16482;16483;16484;16485;16486;16487;16488;16489;16490;16491 16470 26 CKAEHDQLLLNYAK Unmodified 1701.8508 0.85083993 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0.707 2 4 2 4 4 42.827 43.117 3;4 5.8324E-14 12937 20211116_3446_TMUAki_TMT10x_S_F7 149.8 114.85 7707600 12265000 294890 15447000 19428000 17933000 10095000 14092000 12914000 11644000 12615000 7178600 11456000 1066400 15571000 18411000 18030000 10815000 14449000 13004000 11473000 12179000 9 9 7 9 9 9 9 9 9 9 9 5375800 8449400 256550 10478000 17573000 16249000 8537100 10058000 9048400 8145300 8684700 5007200 7891800 849730 10632000 16638000 16058000 9147800 10481000 9170000 8034000 8389100 4 4 3 4 4 4 4 4 4 4 4 2331800 3815100 38339 4969600 1854900 1684400 1558000 4034700 3865700 3498400 3930500 2171400 3564300 216700 4939200 1773100 1971400 1667300 3967500 3834000 3438800 3789600 5 5 4 5 5 5 5 5 5 5 5 2656300000 1996500000 659860000 2311 748 2166 13685;13686;13687;13688;13689;13690;13691;13692 16492;16493;16494;16495;16496;16497;16498;16499;16500;16501 16500 10 CKDDEFTHLYTLIVRPDNTYEVK Unmodified 2855.38 0.37999459 832 P27797 CALR Calreticulin yes yes 0 0 0 2 By MS/MS By MS/MS 5.46 2.21 2 1 2 3 3 2 7 6 69.085 69.163 4;5 1.3145E-27 21288 20211116_3434_TMUAki_TMT10x_P_F6 164.66 152.02 187820000 321830000 2059500 288860000 223550000 305190000 235420000 191270000 168450000 189020000 228270000 174880000 300180000 15956000 297260000 214640000 307340000 236100000 200160000 176420000 184700000 218360000 22 22 14 22 22 22 22 22 22 22 22 113320000 194140000 1429600 168550000 118220000 212090000 134270000 114360000 102150000 114300000 134130000 105510000 181060000 9533600 174410000 113770000 211180000 134360000 121200000 106460000 111630000 128400000 13 13 8 13 13 13 13 13 13 13 13 74505000 127690000 629940 120310000 105330000 93097000 101150000 76914000 66298000 74722000 94141000 69370000 119120000 6422100 122850000 100870000 96156000 101740000 78952000 69960000 73068000 89953000 9 9 6 9 9 9 9 9 9 9 9 27822000000 16210000000 11612000000 2312 832 2167 13693;13694;13695;13696;13697;13698;13699;13700;13701;13702;13703;13704;13705 16502;16503;16504;16505;16506;16507;16508;16509;16510;16511;16512;16513;16514;16515;16516;16517;16518;16519;16520;16521;16522;16523 16508 22 CLAFHDISPQAPTHFLVIPK Unmodified 2290.1932 0.19324386 1120 P49773 HINT1 Histidine triad nucleotide-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.14 0.639 1 4 2 3 4 66.967 66.677 4;5 2.8955E-24 22348 20211116_3429_TMUAki_TMT10x_P_F2 160.55 150.08 89372000 161300000 3751300 153430000 110200000 152850000 119660000 89674000 79519000 99080000 118480000 83242000 150480000 11195000 157070000 106130000 154330000 119640000 94645000 84036000 96379000 113080000 13 13 12 13 13 13 13 13 13 13 13 48690000 84621000 2384800 80852000 57680000 103770000 69687000 50414000 45686000 55900000 64155000 45353000 78946000 6385200 83091000 55753000 103100000 69316000 54114000 48184000 54369000 61316000 7 7 7 7 7 7 7 7 7 7 7 40682000 76675000 1366500 72574000 52523000 49080000 49973000 39260000 33832000 43180000 54320000 37889000 71530000 4809900 73976000 50380000 51228000 50323000 40530000 35852000 42010000 51766000 6 6 5 6 6 6 6 6 6 6 6 20969000000 11320000000 9648500000 2313 1120 2168 13706;13707;13708;13709;13710;13711;13712 16524;16525;16526;16527;16528;16529;16530;16531;16532;16533;16534;16535;16536 16525 13 CLALATHDNPLR Unmodified 1379.698 0.6979681 697 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 0 0 By MS/MS 6 0 1 1 40.436 40.6 3 0.0014608 10016 20211116_3445_TMUAki_TMT10x_S_F6 72.705 53.925 363150 652980 25086 825350 457760 288740 325440 422370 409670 411680 516510 338310 609950 54812 821790 437120 330250 339630 422380 416870 402510 494950 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 363150 652980 25086 825350 457760 288740 325440 422370 409670 411680 516510 338310 609950 54812 821790 437120 330250 339630 422380 416870 402510 494950 1 1 1 1 1 1 1 1 1 1 1 26671000 0 26671000 2314 697 2169 13713 16537 16537 1 CLALATHDNPLRR Unmodified 1535.7991 0.79907913 697 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 4 2 2 36.113 36.086 3;4 2.4935E-19 8360 20211116_3428_TMUAki_TMT10x_P_F1 188.06 172.43 1828000 2920200 23121 3370000 3164400 2840500 2181300 2252500 2233000 1992300 2634000 1702200 2726500 183080 3398300 3010300 2913200 2265600 2312000 2283700 1956500 2528500 6 6 3 6 6 6 6 6 6 6 6 819950 1360900 5692.8 1549000 2296800 2022200 1233900 1163300 1188200 990330 1272600 763430 1270600 85245 1574100 2175400 2011600 1305800 1221000 1213800 974340 1225000 3 3 1 3 3 3 3 3 3 3 3 1008100 1559300 17428 1821000 867550 818360 947410 1089100 1044800 1002000 1361400 938740 1456000 97832 1824200 834910 901620 959840 1091100 1069900 982170 1303500 3 3 2 3 3 3 3 3 3 3 3 659790000 437620000 222170000 2315 697 2170 13714;13715;13716;13717 16538;16539;16540;16541;16542;16543 16538 6 CLDAVVSTR Unmodified 1019.507 0.50697943 2116 Q86VP6;Q86VP6-2;Q86VP6-3 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 38.48 38.48 2 3.1311E-05 9407 20211116_3444_TMUAki_TMT10x_S_F5 111.82 80.747 3574700 5144800 4272.8 5912200 5808600 6120700 3847400 3595300 3299500 3425900 4629900 3327800 4803500 253650 5980400 5515500 6165800 3988200 3777800 3427800 3352900 4425100 4 4 2 4 4 4 4 4 4 4 4 3124800 4451700 1461.4 5088900 5386200 5747000 3387300 3157300 2916200 3025700 4024100 2908900 4156300 214110 5156300 5109300 5755800 3525800 3336900 3026600 2960500 3847600 3 3 1 3 3 3 3 3 3 3 3 449940 693060 2811.4 823370 422380 373770 460120 437970 383290 400190 605780 418960 647190 39538 824050 406120 409950 462360 440930 401190 392400 577480 1 1 1 1 1 1 1 1 1 1 1 272370000 181180000 91194000 2316 2116 2171 13718;13719;13720;13721;13722 16544;16545;16546;16547;16548 16548 5 CLEEFELLGK Unmodified 1236.606 0.60602477 2588 Q99613;Q99613-2;B5ME19 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 3 3 4 2 73.306 73.28 2;3 2.948E-08 23935 20211116_3431_TMUAki_TMT10x_P_F4 164.68 120.88 10960000 18679000 27584 17308000 13554000 14051000 11937000 8977700 6939600 9705500 12761000 10205000 17424000 970670 17705000 12957000 14401000 12038000 9405700 7485100 9448900 12130000 2 2 2 2 2 2 2 2 2 2 2 4840200 7884900 3720.2 7405200 5316900 8402500 5385600 3924800 3279300 4218400 5593400 4506800 7355700 411430 7603300 5100000 8397800 5394000 4225300 3510400 4107900 5324100 1 1 1 1 1 1 1 1 1 1 1 6119400 10794000 23864 9902900 8236700 5648300 6551200 5052900 3660300 5487000 7168100 5697900 10068000 559240 10102000 7856800 6003200 6643800 5180500 3974700 5341000 6806300 1 1 1 1 1 1 1 1 1 1 1 1504500000 462400000 1042100000 2317 2588 2172 13723;13724;13725;13726;13727;13728 16549;16550;16551;16552;16553 16549 5 CLELFSELAEDK Unmodified 1452.6806 0.68064628 553 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 78.289 78.245 2 6.601E-07 27490 20211116_3439_TMUAki_TMT10x_S_F1 123.51 92.943 4460300 6679800 0 9221000 4607000 4236100 4781900 4470200 4132000 3998700 4976800 4152500 6242500 317030 9152900 4418300 4628200 4821300 4519100 4262000 3924800 4774800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4460300 6679800 0 9221000 4607000 4236100 4781900 4470200 4132000 3998700 4976800 4152500 6242500 317030 9152900 4418300 4628200 4821300 4519100 4262000 3924800 4774800 1 1 0 1 1 1 1 1 1 1 1 655170000 0 655170000 2318 553 2173 13729;13730 16554;16555 16555 2 CLELFSELAEDKENYK Unmodified 1986.9245 0.92445838 553 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 1 By MS/MS By MS/MS 4.4 1.02 1 2 1 1 3 2 76.665 76.668 3 5.4846E-15 25749 20211116_3442_TMUAki_TMT10x_S_F4 132.44 107.38 5617100 8474100 0 10252000 4451400 6798300 4615500 2726400 2625800 3133600 5687400 5229900 7913800 416280 10281000 4270200 7047200 4611600 2989700 2867000 3043700 5391700 1 1 0 1 1 1 1 1 1 1 1 5617100 8474100 0 10252000 4451400 6798300 4615500 2726400 2625800 3133600 5687400 5229900 7913800 416280 10281000 4270200 7047200 4611600 2989700 2867000 3043700 5391700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2554700000 2554700000 0 2319 553 2174 13731;13732;13733;13734;13735 16556;16557;16558 16558 3 CLELFSELAEDKENYKK Unmodified 2115.0194 0.019421398 553 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 2 By MS/MS By MS/MS 6 1.88 1 1 2 3 3 3 6 7 69.851 69.904 4;5 7.0615E-43 23443 20211116_3435_TMUAki_TMT10x_P_F7 225.69 197.95 328060000 573390000 4799200 597960000 346110000 417170000 348320000 226510000 146020000 226430000 369540000 305490000 535130000 31586000 605580000 332190000 431850000 346940000 239920000 165330000 221150000 349560000 25 25 21 25 25 25 25 25 25 25 25 175400000 302140000 2815100 317720000 222040000 283870000 190540000 117630000 69509000 116170000 192680000 163330000 281990000 17609000 322520000 212260000 287540000 191180000 127950000 80380000 113520000 182060000 9 9 7 9 9 9 9 9 9 9 9 152660000 271250000 1984100 280250000 124080000 133300000 157770000 108870000 76512000 110260000 176860000 142160000 253140000 13977000 283060000 119930000 144310000 155760000 111970000 84954000 107630000 167500000 16 16 14 16 16 16 16 16 16 16 16 39342000000 21244000000 18098000000 2320 553 2175 13736;13737;13738;13739;13740;13741;13742;13743;13744;13745;13746;13747;13748 16559;16560;16561;16562;16563;16564;16565;16566;16567;16568;16569;16570;16571;16572;16573;16574;16575;16576;16577;16578;16579;16580;16581;16582;16583 16565 25 CLELFTELAEDKENYKK Unmodified 2129.0351 0.035071462 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 2 By MS/MS By MS/MS 6 1.41 2 2 2 2 2 5 5 72.206 72.231 4 2.9557E-43 24895 20211116_3446_TMUAki_TMT10x_S_F7 232.95 218.64 280680000 478370000 4542100 484670000 317610000 386170000 330190000 221600000 135870000 225980000 334760000 261370000 446400000 26514000 492530000 305030000 395780000 328250000 233740000 153790000 220520000 316780000 22 22 18 22 22 22 22 22 22 22 22 125370000 213910000 1715900 215270000 159700000 230030000 148100000 97678000 57616000 97982000 150210000 116740000 199610000 11331000 219740000 152870000 230460000 148030000 106000000 65860000 95682000 142040000 9 9 6 9 9 9 9 9 9 9 9 155310000 264460000 2826200 269400000 157900000 156140000 182090000 123920000 78257000 128000000 184550000 144630000 246790000 15183000 272790000 152160000 165330000 180220000 127740000 87928000 124840000 174740000 13 13 12 13 13 13 13 13 13 13 13 22855000000 12276000000 10579000000 2321 544 2176 13749;13750;13751;13752;13753;13754;13755;13756;13757;13758 16584;16585;16586;16587;16588;16589;16590;16591;16592;16593;16594;16595;16596;16597;16598;16599;16600;16601;16602;16603;16604;16605 16600 22 CLGHPEEFYNLVR Unmodified 1632.7719 0.77186132 964 P37268;P37268-5 FDFT1 Squalene synthase yes no 0 0 0 0 By MS/MS By matching 6.5 0.5 1 1 1 1 54.53 54.834 3 0.00014499 15418 20211116_3434_TMUAki_TMT10x_P_F6 85.813 72.134 2553800 4273100 82689 4178000 4113100 4807500 3048600 3886500 3267600 2931700 3224900 2378400 3986900 310630 4278400 3922100 4838000 3154800 3969500 3313100 2902600 3112300 1 1 1 1 1 1 1 1 1 1 1 2553800 4273100 82689 4178000 4113100 4807500 3048600 3886500 3267600 2931700 3224900 2378400 3986900 310630 4278400 3922100 4838000 3154800 3969500 3313100 2902600 3112300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 675290000 463960000 211330000 2322 964 2177 13759;13760 16606 16606 1 CLGPLVSK Unmodified 872.47897 0.47897377 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 By MS/MS 1 0 1 1 50.13 49.868 2 0.0052192 16023 20211116_3439_TMUAki_TMT10x_S_F1 89.298 32.195 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2323 2116 2178 13761 16607 16607 1 CLHMFLQEEAIDR Oxidation (M) 1676.7651 0.76506139 3186 Q9UMY4;Q9UMY4-1;Q9UMY4-3 SNX12 Sorting nexin-12 yes no 0 0 1 0 By matching By MS/MS 3.4 0.49 3 2 2 3 49.44 49.519 3 0.0026945 16902 20211116_3441_TMUAki_TMT10x_S_F3 66.393 52.487 2795600 5286200 71257 4772200 4552100 3100100 2423800 5599700 5188600 4546900 4643700 2603500 4930700 322780 4879800 4315600 3317500 2655500 5535800 5138200 4484100 4496500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2795600 5286200 71257 4772200 4552100 3100100 2423800 5599700 5188600 4546900 4643700 2603500 4930700 322780 4879800 4315600 3317500 2655500 5535800 5138200 4484100 4496500 1 1 1 1 1 1 1 1 1 1 1 415790000 251650000 164140000 2324 3186 2179 13762;13763;13764;13765;13766 16608;16609;16610 16608 3179 3 CLHPLANETFVAK Unmodified 1498.7602 0.76023401 1659 Q13642-1;Q13642-5;Q13642-4;Q13642;Q13642-3 FHL1 Four and a half LIM domains protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 46.757 47.285 3 1.0122E-11 14229 20211116_3435_TMUAki_TMT10x_P_F7 145.31 125.73 12951000 22517000 116550 22916000 23257000 26686000 15330000 20050000 19408000 17489000 20388000 12060000 21012000 867470 23406000 22105000 26804000 16091000 20644000 19600000 17186000 19637000 3 3 1 3 3 3 3 3 3 3 3 8579800 15052000 116550 15772000 19051000 23629000 12169000 13980000 13295000 12118000 13611000 7989500 14048000 541050 16157000 18101000 23370000 12738000 14645000 13487000 11911000 13120000 2 2 1 2 2 2 2 2 2 2 2 4371600 7464500 0 7143600 4205800 3056400 3160700 6070100 6113000 5371500 6776900 4070100 6963900 326420 7249200 4004300 3433400 3352100 5998600 6113300 5274900 6516800 1 1 0 1 1 1 1 1 1 1 1 1458700000 809660000 649030000 2325 1659 2180 13767;13768 16611;16612;16613 16611 3 CLIATGGTPR Unmodified 1044.5386 0.53861391 448 O95831;O95831-3;O95831-6;O95831-4 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 6.33 2.49 1 1 1 3 4 2 33.794 34.102 2 1.1444E-05 6850 20211116_3447_TMUAki_TMT10x_S_F8 139.78 92.187 1117100 1829900 8482.1 1994800 1318500 1057100 1005300 1368400 1305100 1072900 1510500 1040200 1708100 91933 2009300 1256500 1141700 1045400 1366800 1321900 1060100 1450800 8 8 3 8 8 8 8 8 8 8 8 232030 328630 1111.9 339450 387410 390750 230690 188050 205210 179340 238910 216010 306680 17220 346300 367260 390350 241410 201160 211080 175510 229430 3 3 1 3 3 3 3 3 3 3 3 885100 1501300 7370.2 1655300 931120 666310 774580 1180400 1099900 893600 1271600 824160 1401400 74713 1663000 889230 751350 803940 1165600 1110800 884550 1221400 5 5 2 5 5 5 5 5 5 5 5 43690000 18136000 25554000 2326 448 2181 13769;13770;13771;13772;13773;13774 16614;16615;16616;16617;16618;16619;16620;16621;16622;16623 16623 10 CLIEILASR Unmodified 1073.5903 0.59031513 548 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 69.41 69.376 2 2.8638E-05 21471 20211116_3447_TMUAki_TMT10x_S_F8 133.98 102.71 7366700 11297000 0 10605000 8293200 12460000 8107100 7886500 7447200 8116600 9319500 6858400 10539000 542420 10895000 7941900 12476000 8212700 8256200 7671600 7917700 8932200 2 2 0 2 2 2 2 2 2 2 2 4922800 7299100 0 6860300 5231200 9595300 5187500 5148900 4901700 5496200 5987400 4583000 6809200 331510 7070500 5009500 9506400 5255300 5469900 5037600 5353600 5742200 1 1 0 1 1 1 1 1 1 1 1 2443800 3998000 0 3744200 3062000 2864500 2919700 2737600 2545500 2620400 3332000 2275400 3729600 210910 3824500 2932400 2969600 2957400 2786300 2633900 2564100 3189900 1 1 0 1 1 1 1 1 1 1 1 624810000 369290000 255530000 2327 548 2182 13775;13776;13777;13778 16624;16625;16626;16627 16627 4 CLLIHPNPESALNEEAGR Unmodified 2018.9844 0.9843733 1862 Q16763 UBE2S Ubiquitin-conjugating enzyme E2 S yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 50.27 50.454 3 7.8558E-13 13727 20211116_3444_TMUAki_TMT10x_S_F5 138.55 115.54 1793100 2878800 44488 3412800 1759100 1681100 1351600 2819300 2936600 2253500 2522300 1669900 2688200 189640 3418000 1679200 1845000 1441300 2792100 2903400 2224200 2446000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1793100 2878800 44488 3412800 1759100 1681100 1351600 2819300 2936600 2253500 2522300 1669900 2688200 189640 3418000 1679200 1845000 1441300 2792100 2903400 2224200 2446000 1 1 1 1 1 1 1 1 1 1 1 195230000 0 195230000 2328 1862 2183 13779;13780 16628;16629 16629 2 CLLLVHEPK Unmodified 1107.6111 0.61105057 2596 Q99661;Q99661-2 KIF2C Kinesin-like protein KIF2C yes no 0 0 0 0 By MS/MS 7 0 1 1 45.146 45.652 3 0.0039871 14062 20211116_3446_TMUAki_TMT10x_S_F7 68.735 51.795 1450700 2335900 0 2260000 1620400 1227100 1220100 2780100 2679200 2154900 2271700 1350600 2179300 104680 2295500 1542500 1348700 1303700 2729500 2647300 2130300 2204100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1450700 2335900 0 2260000 1620400 1227100 1220100 2780100 2679200 2154900 2271700 1350600 2179300 104680 2295500 1542500 1348700 1303700 2729500 2647300 2130300 2204100 1 1 0 1 1 1 1 1 1 1 1 468280000 0 468280000 2329 2596 2184 13781 16630 16630 1 CLNALEELGTLQVTSQILQK Unmodified 2257.1988 0.19878275 2083 Q7Z4V5;Q7Z4V5-2;Q7Z4V5-4;Q7Z4V5-3 HDGFRP2 Hepatoma-derived growth factor-related protein 2 yes no 0 0 0 0 By MS/MS 8 0 1 1 80.297 80.283 3 0.0057625 25933 20211116_3447_TMUAki_TMT10x_S_F8 50.916 35.987 1572400 3346100 0 3075700 2632300 2418900 2927800 1709000 1761800 1670100 2289000 1463400 3121200 59585 3147000 2525800 2488800 2918200 1772300 1862000 1632700 2191800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1572400 3346100 0 3075700 2632300 2418900 2927800 1709000 1761800 1670100 2289000 1463400 3121200 59585 3147000 2525800 2488800 2918200 1772300 1862000 1632700 2191800 1 1 0 1 1 1 1 1 1 1 1 419020000 0 419020000 2330 2083 2185 13782 16631 16631 1 CLQILAAGLFLPGSVGITDPCESGNFR Unmodified 2891.431 0.4309843 1575 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 2.8 0.4 1 4 3 2 81.759 81.726 3;4 1.1574E-12 28946 20211116_3430_TMUAki_TMT10x_P_F3 111.3 102.7 1814400 2847000 35420 2579100 1797700 3395600 2248900 1990400 1907200 2211200 2500000 1689600 2655500 170870 2662200 1736400 3377300 2247000 2101200 1976300 2150500 2393300 4 4 3 4 4 4 4 4 4 4 4 1567900 2504100 35420 2218100 1483800 3087600 1902700 1732700 1594100 1932300 2177900 1460100 2335600 161820 2296000 1435400 3061300 1898500 1836000 1655900 1879000 2082800 3 3 3 3 3 3 3 3 3 3 3 246540 342860 0 361040 313870 308070 346210 257730 313130 278880 322110 229450 319990 9050.1 366250 300960 315970 348460 265210 320320 271490 310450 1 1 0 1 1 1 1 1 1 1 1 785100000 554900000 230210000 2331 1575 2186 13783;13784;13785;13786;13787 16632;16633;16634;16635 16632 4 CLSSLKDER Unmodified 1106.539 0.53900784 1170 P52209;P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 1 By matching By MS/MS 4.5 0.5 1 1 1 1 35.53 35.63 3 0.001213 7651 20211116_3444_TMUAki_TMT10x_S_F5 87.123 65.096 502490 852530 713.84 786720 583120 450980 558150 537070 512990 490280 634180 467870 795260 43454 802220 558540 482070 566060 540310 528160 480760 608020 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 502490 852530 713.84 786720 583120 450980 558150 537070 512990 490280 634180 467870 795260 43454 802220 558540 482070 566060 540310 528160 480760 608020 1 1 1 1 1 1 1 1 1 1 1 47057000 21491000 25566000 2332 1170 2187 13788;13789 16636 16636 1 CLTQSGIAGGYKPFNLETCR Unmodified 2271.0776 0.077621754 877 P30626;P30626-2;P30626-3 SRI Sorcin yes no 0 0 0 1 By MS/MS By MS/MS 2.83 0.373 1 5 1 5 58.676 58.382 3 4.1067E-51 17713 20211116_3440_TMUAki_TMT10x_S_F2 223.89 206.25 15108000 26868000 148320 25876000 19895000 21681000 15841000 19563000 13716000 17441000 20968000 14067000 25067000 1426800 26405000 18981000 22298000 16214000 19933000 14304000 17121000 20002000 4 4 1 4 4 4 4 4 4 4 4 4481900 8210400 148320 7452300 6348100 11642000 6289200 7053900 5884700 6483100 6824100 4174100 7658300 527490 7718800 6093800 11499000 6369900 7386400 6037700 6355300 6553900 2 2 1 2 2 2 2 2 2 2 2 10626000 18658000 0 18423000 13547000 10038000 9551600 12509000 7831400 10958000 14144000 9893300 17409000 899280 18686000 12888000 10799000 9844300 12547000 8266400 10766000 13448000 2 2 0 2 2 2 2 2 2 2 2 2005800000 526630000 1479200000 2333 877 2188 13790;13791;13792;13793;13794;13795 16637;16638;16639;16640;16641;16642;16643 16639 7 CLVHILR Unmodified 909.52184 0.52184164 2145 Q8IWR0 ZC3H7A Zinc finger CCCH domain-containing protein 7A yes yes 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 38.937 38.841 3 0.10916 9671 20211116_3440_TMUAki_TMT10x_S_F2 26.796 4.8682 267370 398240 0 413630 278860 231820 251160 269200 263340 267900 316870 248900 371650 17151 418170 266350 248220 256580 271780 269270 261700 304010 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 267370 398240 0 413630 278860 231820 251160 269200 263340 267900 316870 248900 371650 17151 418170 266350 248220 256580 271780 269270 261700 304010 1 1 0 1 1 1 1 1 1 1 1 15348000 0 15348000 2334 2145 2189 13796;13797 16644 16644 1 CLYASVLTAQPR Unmodified 1377.7075 0.70747015 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 1.96 3 4 2 1 5 5 54.878 54.702 2;3 5.7179E-22 19057 20211116_3441_TMUAki_TMT10x_S_F3 204.52 180.3 30129000 54676000 2029300 50589000 42140000 49550000 33142000 37824000 34883000 30310000 36996000 28067000 51003000 4410500 51882000 40293000 50279000 34142000 38824000 35487000 29912000 35623000 13 13 8 13 13 13 13 13 13 13 13 15883000 27539000 73663 26342000 26440000 36045000 20461000 20381000 16809000 16551000 21277000 14788000 25692000 1403800 27102000 25198000 35770000 20954000 21398000 17419000 16322000 20387000 7 7 4 7 7 7 7 7 7 7 7 14247000 27137000 1955700 24248000 15699000 13505000 12681000 17443000 18074000 13759000 15719000 13279000 25311000 3006800 24780000 15095000 14509000 13188000 17426000 18068000 13589000 15236000 6 6 4 6 6 6 6 6 6 6 6 5616100000 3568200000 2047800000 2335 653 2190 13798;13799;13800;13801;13802;13803;13804;13805;13806;13807 16645;16646;16647;16648;16649;16650;16651;16652;16653;16654;16655;16656;16657;16658 16658 14 CMIDQAHQEERPIR Oxidation (M) 1797.825 0.82503588 3084 Q9UBQ5;Q9UBQ5-2 EIF3K Eukaryotic translation initiation factor 3 subunit K yes no 0 0 1 1 By MS/MS 3 0 1 1 27.554 27.271 4 8.6977E-05 8009 20211116_3441_TMUAki_TMT10x_S_F3 94.09 82.067 52463 105990 0 79301 53264 56490 59990 60952 56430 60815 82449 48849 98805 0 82444 51242 59056 60388 61742 58487 59401 78730 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 52463 105990 0 79301 53264 56490 59990 60952 56430 60815 82449 48849 98805 0 82444 51242 59056 60388 61742 58487 59401 78730 1 1 0 1 1 1 1 1 1 1 1 9576300 0 9576300 2336 3084 2191 13808 16659 16659 3128 1 CMIDQAHQEERPIR Unmodified 1781.8301 0.83012126 3084 Q9UBQ5;Q9UBQ5-2 EIF3K Eukaryotic translation initiation factor 3 subunit K yes no 0 0 0 1 By MS/MS 3 0 1 1 30.931 30.678 4 2.8754E-05 9313 20211116_3441_TMUAki_TMT10x_S_F3 100.18 83.498 170800 300460 0 255110 188100 169140 185670 190250 170660 133820 241560 159010 280200 12300 262170 180160 178090 187990 190680 176790 133020 230830 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 170800 300460 0 255110 188100 169140 185670 190250 170660 133820 241560 159010 280200 12300 262170 180160 178090 187990 190680 176790 133020 230830 1 1 0 1 1 1 1 1 1 1 1 21235000 0 21235000 2337 3084 2191 13809 16660 16660 1 CMPTFQFFKK Unmodified 1332.6359 0.63588512 607 P10599;P10599-2 TXN Thioredoxin yes no 0 0 0 1 By MS/MS 6 0 1 1 64.591 64.547 3 0.0045343 19823 20211116_3445_TMUAki_TMT10x_S_F6 71.159 57.253 13663000 22887000 180380 25198000 19150000 9822900 12086000 8168400 6240800 9069900 15346000 12723000 21365000 1377700 25313000 18195000 10918000 12448000 8415600 6927800 8821000 14522000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13663000 22887000 180380 25198000 19150000 9822900 12086000 8168400 6240800 9069900 15346000 12723000 21365000 1377700 25313000 18195000 10918000 12448000 8415600 6927800 8821000 14522000 1 1 1 1 1 1 1 1 1 1 1 453730000 0 453730000 2338 607 2192 13810 16661 16661 1 CMQLTDFILK Unmodified 1267.6305 0.63046539 1145 P50914 RPL14 60S ribosomal protein L14 yes yes 0 0 0 0 By MS/MS By MS/MS 5 3.29 2 1 2 2 3 77.707 77.7 2 5.7556E-11 25476 20211116_3436_TMUAki_TMT10x_P_F8 207.83 155.84 45413000 76619000 239890 78369000 51637000 45492000 54251000 21961000 16291000 25199000 48590000 42285000 71500000 3965400 79334000 49585000 47843000 53717000 23613000 19380000 24478000 45873000 5 5 4 5 5 5 5 5 5 5 5 21609000 35802000 124730 37439000 23623000 27919000 26783000 9178400 7135300 11065000 21977000 20120000 33413000 1825600 37936000 22731000 28608000 26394000 10334000 8645400 10729000 20741000 2 2 1 2 2 2 2 2 2 2 2 23804000 40817000 115150 40929000 28013000 17572000 27468000 12783000 9155400 14134000 26613000 22165000 38087000 2139800 41397000 26854000 19235000 27323000 13279000 10735000 13749000 25132000 3 3 3 3 3 3 3 3 3 3 3 4687500000 2261900000 2425600000 2339 1145 2193 13811;13812;13813;13814;13815 16662;16663;16664;16665;16666 16663 5 CMQLTDFILK Oxidation (M) 1283.6254 0.62538001 1145 P50914 RPL14 60S ribosomal protein L14 yes yes 0 0 1 0 By MS/MS By MS/MS 7.4 0.49 3 2 3 2 69.6 69.565 2;3 1.8773E-07 23359 20211116_3435_TMUAki_TMT10x_P_F7 108.47 72.51 17786000 31703000 192640 27291000 20894000 26254000 20856000 28996000 21783000 24763000 27269000 16562000 29565000 1637700 28138000 20041000 26872000 21186000 29216000 22315000 24359000 26136000 3 3 2 3 3 3 3 3 3 3 3 4818500 8258500 0 7182000 5716900 10970000 6113700 6838600 5378300 6079800 6529500 4486000 7702000 352090 7459500 5487700 10849000 6157800 7138800 5544500 5969100 6263100 1 1 0 1 1 1 1 1 1 1 1 12968000 23444000 192640 20109000 15177000 15284000 14742000 22158000 16405000 18683000 20740000 12076000 21863000 1285600 20678000 14553000 16023000 15028000 22077000 16770000 18390000 19873000 2 2 2 2 2 2 2 2 2 2 2 1638100000 843360000 794740000 2340 1145 2193 13816;13817;13818;13819;13820 16667;16668;16669;16670;16671;16672 16667 1510 6 CMTNTPVVVR Unmodified 1175.5791 0.57909852 902 P32322;P32322-2;P32322-3 PYCR1 Pyrroline-5-carboxylate reductase 1, mitochondrial yes no 0 0 0 0 By MS/MS 7 0 1 1 35.417 35.851 2 1.9879E-07 9682 20211116_3435_TMUAki_TMT10x_P_F7 159.79 127.83 135270 198260 1504.9 238860 319700 231140 163360 104930 77738 95343 177740 125960 185150 15201 240690 302710 233110 171230 112770 86380 93512 168360 1 1 1 1 1 1 1 1 1 1 1 135270 198260 1504.9 238860 319700 231140 163360 104930 77738 95343 177740 125960 185150 15201 240690 302710 233110 171230 112770 86380 93512 168360 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12334000 12334000 0 2341 902 2194 13821 16673 16673 1 CNAAFGANDFHR Unmodified 1378.5837 0.58366662 1950 Q5VTR2 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 0 0 0 0 By MS/MS 5 0 1 1 33.591 33.769 3 0.00015576 7014 20211116_3444_TMUAki_TMT10x_S_F5 88.101 75.093 227490 400720 896.81 397320 215050 177830 233810 206480 245250 194950 292520 211820 373900 19522 402290 206720 195340 236540 208150 250680 190870 280720 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 227490 400720 896.81 397320 215050 177830 233810 206480 245250 194950 292520 211820 373900 19522 402290 206720 195340 236540 208150 250680 190870 280720 1 1 1 1 1 1 1 1 1 1 1 9214200 0 9214200 2342 1950 2195 13822 16674 16674 1 CNEIINWLDK Unmodified 1303.6231 0.62307182 615 P11142 HSPA8 Heat shock cognate 71 kDa protein yes yes 0 0 0 0 By MS/MS By MS/MS 5 1.46 1 2 3 4 4 3 11 6 73.899 73.897 2;3 7.0712E-14 23228 20211116_3434_TMUAki_TMT10x_P_F6 221.5 167.72 160710000 259110000 881360 289230000 187200000 143430000 180890000 60455000 45812000 66628000 171040000 149640000 241890000 13787000 290750000 179340000 153250000 179630000 65839000 56960000 64818000 161120000 18 18 8 18 18 18 18 18 18 18 18 96274000 152900000 729900 170000000 111150000 109340000 113910000 36942000 27789000 40714000 101190000 89642000 142740000 8387900 171310000 106660000 113510000 112740000 41327000 34644000 39608000 95339000 11 11 6 11 11 11 11 11 11 11 11 64441000 106210000 151460 119230000 76053000 34086000 66973000 23514000 18023000 25915000 69852000 60000000 99153000 5399000 119440000 72688000 39739000 66893000 24512000 22317000 25211000 65779000 7 7 2 7 7 7 7 7 7 7 7 21552000000 11128000000 10424000000 2343 615 2196 13823;13824;13825;13826;13827;13828;13829;13830;13831;13832;13833;13834;13835;13836;13837;13838;13839 16675;16676;16677;16678;16679;16680;16681;16682;16683;16684;16685;16686;16687;16688;16689;16690;16691;16692;16693;16694 16684 20 CNEIINWLDKNQTAEKEEFEHQQK Unmodified 3030.4141 0.41414826 615 P11142 HSPA8 Heat shock cognate 71 kDa protein yes yes 0 0 0 2 By MS/MS By MS/MS 6.4 1.02 1 2 1 1 1 4 63.169 63.272 5 0.0010476 18985 20211116_3434_TMUAki_TMT10x_P_F6 61.345 49.928 7367400 15702000 100640 9377000 15940000 16211000 12698000 9951700 7368300 10412000 13222000 6860100 14628000 775100 10115000 15205000 15953000 12885000 10448000 7937000 10150000 12574000 2 2 1 2 2 2 2 2 2 2 2 2597200 5376300 0 3405200 4779900 8892100 6264700 3542700 2918500 3827700 4434700 2417800 5009300 196330 3695100 4617300 8600000 6173300 3880400 3169300 3726600 4231000 1 1 0 1 1 1 1 1 1 1 1 4770200 10326000 100640 5971800 11160000 7319400 6433700 6409000 4449900 6584300 8787700 4442300 9619100 578770 6420000 10588000 7352900 6711700 6567400 4767700 6423300 8342900 1 1 1 1 1 1 1 1 1 1 1 4485700000 886200000 3599500000 2344 615 2197 13840;13841;13842;13843;13844 16695;16696 16695 2 CNEPAVWSQLAK Unmodified 1401.6711 0.67108465 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS 6 0 1 1 57.652 57.722 3 0.00066565 16578 20211116_3434_TMUAki_TMT10x_P_F6 79.089 64.402 2483900 4058000 48717 4401500 4593800 5734600 3511500 2928200 2611100 2540000 3315800 2313100 3787800 280880 4485900 4380500 5696700 3590500 3107200 2720700 2496700 3176800 1 1 1 1 1 1 1 1 1 1 1 2483900 4058000 48717 4401500 4593800 5734600 3511500 2928200 2611100 2540000 3315800 2313100 3787800 280880 4485900 4380500 5696700 3590500 3107200 2720700 2496700 3176800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 446930000 446930000 0 2345 1471 2198 13845 16697 16697 1 CNFESNFPR Unmodified 1169.4924 0.492392 2507 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 42.333 42.416 2 0.10992 11327 20211116_3431_TMUAki_TMT10x_P_F4 55.235 47.755 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2346 2507 2199 13846 16698 16698 1 CNNVLYIR Unmodified 1050.528 0.52804923 1350 P62306 SNRPF Small nuclear ribonucleoprotein F yes yes 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 40.515 41.147 2 0.0018164 12131 20211116_3446_TMUAki_TMT10x_S_F7 117.16 90.04 373920 656930 6366.7 682620 358430 349040 360150 485790 436810 380930 575720 348210 613080 36717 689590 344100 379230 367600 483880 445960 376360 551080 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 373920 656930 6366.7 682620 358430 349040 360150 485790 436810 380930 575720 348210 613080 36717 689590 344100 379230 367600 483880 445960 376360 551080 1 1 1 1 1 1 1 1 1 1 1 54287000 0 54287000 2347 1350 2200 13847;13848 16699;16700 16699 2 CNVWILDGDLYHK Unmodified 1631.7766 0.77661235 3350;202 Q9Y6G9;O43237 DYNC1LI1;DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 1;Cytoplasmic dynein 1 light intermediate chain 2 no no 0 0 0 0 By MS/MS 7 0 1 1 66.411 66.786 3 0.07828 22710 20211116_3446_TMUAki_TMT10x_S_F7 38.337 22.792 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2348 3350;202 2201 13849 16701 16701 1 CPACFVGTITGDRR Unmodified 1608.7501 0.75008003 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 1 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 46.561 46.269 3 2.7267E-37 14097 20211116_3429_TMUAki_TMT10x_P_F2 242.94 217.29 1039200 1894600 0 2139700 2512100 2725700 1740700 1485800 1447700 1220200 1805800 967500 1768700 93167 2174300 2388400 2712800 1796900 1565300 1498300 1202600 1730900 1 1 0 1 1 1 1 1 1 1 1 1039200 1894600 0 2139700 2512100 2725700 1740700 1485800 1447700 1220200 1805800 967500 1768700 93167 2174300 2388400 2712800 1796900 1565300 1498300 1202600 1730900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 330660000 330660000 0 2349 157 2202 13850;13851;13852 16702;16703;16704 16702 3 CPALYWLSGLTCTEQNFISK Unmodified 2387.129 0.12898862 612 P10768 ESD S-formylglutathione hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 3 1 2 81.5 81.489 3;4 1.1692E-24 27690 20211116_3442_TMUAki_TMT10x_S_F4 170.16 153.48 2504000 3996000 842.85 4138600 2559800 2386800 3593400 1469500 1071700 1698500 2884600 2331000 3729200 142560 4185800 2476100 2518900 3512800 1547200 1264900 1649400 2726500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2504000 3996000 842.85 4138600 2559800 2386800 3593400 1469500 1071700 1698500 2884600 2331000 3729200 142560 4185800 2476100 2518900 3512800 1547200 1264900 1649400 2726500 2 2 1 2 2 2 2 2 2 2 2 546940000 0 546940000 2350 612 2203 13853;13854;13855 16705;16706;16707 16706 3 CPEALFQPSFLGMESCGIHETTFNSIMK 2 Oxidation (M) 3262.4443 0.44432746 1276;1406 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 2 0 By MS/MS By MS/MS 8 0 2 1 1 76.206 76.174 3;4 0.00071439 24237 20211116_3447_TMUAki_TMT10x_S_F8 59.893 54.64 3661800 6425000 19634 5424400 3512500 9970900 3660800 4496200 5834800 6485400 4347300 3409600 5991500 319790 5672500 3372800 9754200 3772800 4907300 5788000 6252000 4239700 3 3 3 3 3 3 3 3 3 3 3 1844000 2901100 4906.7 2575900 1196400 5098400 1375000 1898700 2376200 2713500 1832400 1717000 2705800 148380 2688500 1151900 4966400 1416400 2116300 2354200 2616600 1784500 1 1 1 1 1 1 1 1 1 1 1 1817800 3523900 14728 2848500 2316100 4872400 2285800 2597600 3458700 3771900 2514800 1692700 3285600 171410 2983900 2220900 4787800 2356500 2791000 3433800 3635400 2455200 2 2 2 2 2 2 2 2 2 2 2 3614400000 2660000000 954440000 2351 1276;1406 2204 13856;13857 16708;16709;16710 16709 1716;1717 3 CPFGALSIVNLPSNLEK Unmodified 1857.9659 0.96586969 1303 P61221 ABCE1 ATP-binding cassette sub-family E member 1 yes yes 0 0 0 0 By MS/MS 2 0 1 1 78.875 78.845 2 3.4265E-10 27265 20211116_3429_TMUAki_TMT10x_P_F2 122.33 97.471 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2352 1303 2205 13858 16711 16711 1 CPFTGNVSIR Unmodified 1149.5601 0.56007764 1348 P62280 RPS11 40S ribosomal protein S11 yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 44.191 44.35 2 6.5977E-11 11778 20211116_3436_TMUAki_TMT10x_P_F8 206.23 178.06 10988000 17296000 24870 19248000 21328000 21439000 12493000 18207000 16619000 14859000 16867000 10230000 16147000 952350 19531000 20222000 21633000 13262000 18575000 16735000 14650000 16263000 7 7 2 7 7 7 7 7 7 7 7 6635900 10056000 20708 11314000 17193000 17908000 9100500 11001000 10001000 9187600 10134000 6178100 9388200 635430 11552000 16278000 17682000 9682100 11480000 10140000 9047800 9771600 3 3 1 3 3 3 3 3 3 3 3 4352300 7240300 4161.9 7934200 4135100 3530700 3392300 7206100 6617200 5671800 6733100 4052100 6758500 316920 7979300 3943600 3951100 3579600 7095200 6594800 5602600 6491500 4 4 1 4 4 4 4 4 4 4 4 2389600000 1580800000 808760000 2353 1348 2206 13859;13860;13861;13862;13863;13864 16712;16713;16714;16715;16716;16717;16718 16714 7 CPHYFLPNLDLFQGKPHSALENAAK Unmodified 2866.4225 0.42246853 1626 Q13394 MAB21L1 Protein mab-21-like 1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 65.041 64.709 5 1.9514E-11 21594 20211116_3429_TMUAki_TMT10x_P_F2 108.4 96.881 6165400 11445000 0 9888000 7243500 10303000 7158700 6171100 5981000 5660000 7739400 5740100 10673000 460980 10204000 6939100 10377000 7229300 6467600 6198500 5548900 7411500 2 2 0 2 2 2 2 2 2 2 2 4024200 6923300 0 5736700 4053300 7618700 4407000 3532800 3549600 3454200 4557100 3746800 6455700 307610 5964300 3893600 7553500 4425200 3795700 3684400 3376800 4364900 1 1 0 1 1 1 1 1 1 1 1 2141200 4521400 0 4151300 3190300 2684000 2751700 2638400 2431400 2205800 3182300 1993300 4217600 153380 4239200 3045400 2823800 2804200 2671900 2514200 2172100 3046600 1 1 0 1 1 1 1 1 1 1 1 1872600000 729930000 1142700000 2354 1626 2207 13865;13866;13867 16719;16720 16719 2 CPLDPYFIMPDK Oxidation (M) 1510.6836 0.68362317 912 P33992 MCM5 DNA replication licensing factor MCM5 yes yes 0 0 1 0 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 67.844 67.793 3 0.0014159 20774 20211116_3434_TMUAki_TMT10x_P_F6 72.958 59.295 8787200 15095000 90875 13734000 10659000 15377000 10438000 10222000 9458500 10036000 11401000 8182400 14080000 839420 14131000 10220000 15448000 10569000 10648000 9734100 9809100 10938000 3 3 3 3 3 3 3 3 3 3 3 5219700 9056600 37713 8330600 6536900 11645000 7012400 6264900 5892300 6088100 6935500 4860300 8448000 486340 8599400 6282100 11538000 7053400 6635900 6080400 5953200 6658100 2 2 2 2 2 2 2 2 2 2 2 3567500 6038000 53161 5403200 4121800 3732200 3425500 3957300 3566100 3947700 4465300 3322100 5631700 353080 5532000 3937800 3910200 3515400 4011800 3653700 3855900 4279700 1 1 1 1 1 1 1 1 1 1 1 1066400000 462990000 603360000 2355 912 2208 13868;13869;13870 16721;16722;16723;16724 16722 1128 4 CPLLKPWALTFSYGR Unmodified 1807.9443 0.94434638 482 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 76.82 76.851 3 2.7766E-19 24539 20211116_3447_TMUAki_TMT10x_S_F8 165.57 151.1 67993000 112100000 599930 105840000 80905000 65349000 78681000 37786000 27704000 38875000 62745000 63312000 104580000 6243800 107810000 77547000 68452000 78348000 39841000 31658000 37922000 59443000 5 5 3 5 5 5 5 5 5 5 5 24573000 40512000 110790 36785000 26215000 36372000 29825000 15627000 12210000 15783000 23809000 22880000 37788000 2038600 37784000 25225000 36613000 29519000 16940000 13604000 15408000 22608000 2 2 1 2 2 2 2 2 2 2 2 43420000 71589000 489140 69057000 54690000 28977000 48856000 22158000 15495000 23092000 38936000 40432000 66791000 4205200 70029000 52322000 31839000 48829000 22901000 18055000 22514000 36835000 3 3 2 3 3 3 3 3 3 3 3 6946200000 3863200000 3083000000 2356 482 2209 13871;13872;13873;13874 16725;16726;16727;16728;16729 16728 5 CPLSGACYSPEFK Unmodified 1514.6534 0.65338567 1207 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 By MS/MS 7 0 1 1 54.352 54.872 3 0.019796 17806 20211116_3446_TMUAki_TMT10x_S_F7 54.524 38.634 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2357 1207 2210 13875 16730 16730 1 CPNLTHLNLSGNK Unmodified 1466.73 0.72999651 977 P39687 ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member A yes yes 0 0 0 0 By MS/MS By MS/MS 4.14 3.09 2 2 1 2 4 3 43.966 43.956 3 3.8549E-12 11521 20211116_3428_TMUAki_TMT10x_P_F1 154.7 120.7 8070200 13673000 62831 17897000 21660000 17041000 10217000 15664000 15127000 11076000 15059000 7514500 12774000 901510 17946000 20484000 17382000 11114000 15859000 15172000 11007000 14529000 5 5 4 5 5 5 5 5 5 5 5 3674700 6406200 23455 8342700 18008000 13549000 6748400 7394200 7169600 5238900 7098400 3421700 5984900 527270 8452000 16986000 13343000 7447000 7764000 7272900 5205300 6849800 2 2 2 2 2 2 2 2 2 2 2 4395400 7266700 39376 9554000 3651600 3492000 3469000 8270100 7957200 5837600 7960300 4092800 6789200 374230 9494500 3498000 4038700 3667200 8094500 7898800 5801600 7678900 3 3 2 3 3 3 3 3 3 3 3 2190500000 1627600000 562860000 2358 977 2211 13876;13877;13878;13879;13880;13881;13882 16731;16732;16733;16734;16735;16736;16737 16731 7 CPNLTYLNLSGNK Unmodified 1492.7344 0.73441319 2666 Q9BTT0;Q9BTT0-3 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E yes no 0 0 0 0 By MS/MS By MS/MS 1.57 0.495 3 4 4 3 60.472 60.287 2;3 5.0435E-31 19755 20211116_3429_TMUAki_TMT10x_P_F2 257.13 212.81 71757000 124710000 1454300 124650000 103760000 131640000 93003000 105880000 100320000 97985000 104920000 66823000 116370000 6890200 127270000 99306000 133090000 95126000 108710000 101900000 96022000 101070000 12 12 8 12 12 12 12 12 12 12 12 41108000 69598000 1090500 69119000 71106000 100710000 62545000 60195000 57573000 55881000 56878000 38284000 64940000 4047300 71019000 68030000 99734000 63736000 63117000 58764000 54754000 54890000 7 7 5 7 7 7 7 7 7 7 7 30649000 55115000 363780 55533000 32658000 30929000 30458000 45680000 42745000 42104000 48042000 28539000 51430000 2843000 56255000 31277000 33358000 31390000 45593000 43136000 41268000 46180000 5 5 3 5 5 5 5 5 5 5 5 5750100000 3817600000 1932500000 2359 2666 2212 13883;13884;13885;13886;13887;13888;13889 16738;16739;16740;16741;16742;16743;16744;16745;16746;16747;16748;16749 16743 12 CPQIVIAFYEER Unmodified 1523.7442 0.74424959 1607;1035 Q13185;P45973 CBX3;CBX5 Chromobox protein homolog 3;Chromobox protein homolog 5 no no 0 0 0 0 By MS/MS By MS/MS 5.08 0.954 4 4 3 1 6 6 70.273 70.32 2;3 9.8724E-12 23177 20211116_3442_TMUAki_TMT10x_S_F4 134.13 108.69 48574000 82000000 148490 73774000 56522000 80458000 57525000 56522000 52323000 56903000 64786000 45225000 76484000 3894800 75943000 54205000 81015000 58137000 58687000 53899000 55559000 62111000 13 13 4 13 13 13 13 13 13 13 13 27777000 45331000 126220 39977000 30959000 57843000 33525000 31844000 28945000 32315000 36416000 25863000 42278000 2268100 41428000 29744000 57240000 33730000 33703000 29912000 31541000 34898000 7 7 2 7 7 7 7 7 7 7 7 20797000 36670000 22272 33797000 25563000 22615000 24001000 24678000 23377000 24588000 28370000 19362000 34206000 1626600 34514000 24461000 23775000 24407000 24984000 23987000 24018000 27213000 6 6 2 6 6 6 6 6 6 6 6 4808800000 2287800000 2521000000 2360 1607;1035 2213 13890;13891;13892;13893;13894;13895;13896;13897;13898;13899;13900;13901 16750;16751;16752;16753;16754;16755;16756;16757;16758;16759;16760;16761;16762;16763;16764;16765;16766 16759 17 CPQVVISFYEER Unmodified 1525.7235 0.72351415 1451 P83916 CBX1 Chromobox protein homolog 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.12 0.781 2 3 3 3 5 63.121 63.185 2;3 3.0672E-39 18932 20211116_3444_TMUAki_TMT10x_S_F5 294.24 262.75 22250000 38365000 109820 34703000 26280000 34680000 24995000 25040000 22689000 23864000 28611000 20716000 35785000 1823700 35661000 25161000 35115000 25349000 25910000 23393000 23355000 27417000 7 7 3 7 7 7 7 7 7 7 7 12699000 21551000 14493 19280000 14223000 24651000 14393000 14063000 13283000 13245000 15795000 11823000 20101000 977780 19909000 13636000 24544000 14556000 14808000 13651000 12970000 15159000 4 4 1 4 4 4 4 4 4 4 4 9551000 16814000 95325 15423000 12057000 10029000 10602000 10977000 9406100 10618000 12817000 8893100 15684000 845900 15752000 11525000 10571000 10793000 11102000 9742400 10385000 12258000 3 3 2 3 3 3 3 3 3 3 3 4337300000 2271500000 2065800000 2361 1451 2214 13902;13903;13904;13905;13906;13907;13908;13909 16767;16768;16769;16770;16771;16772;16773;16774;16775 16772 9 CPSIAAAIAAVNALHGR Unmodified 1690.8937 0.8937078 1711 Q14498;Q14498-2;Q14498-3 RBM39 RNA-binding protein 39 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 71.942 71.922 3 1.3459E-43 22778 20211116_3445_TMUAki_TMT10x_S_F6 233.02 215.52 8256800 14480000 33326 12774000 10167000 15664000 10399000 10866000 9575200 10329000 10953000 7687600 13505000 559100 13195000 9752300 15671000 10511000 11274000 9826000 10110000 10523000 7 7 1 7 7 7 7 7 7 7 7 4910100 9019500 33326 8294300 6043400 11890000 6569300 6833700 6173200 6434500 6836500 4571800 8413500 304420 8566500 5807700 11778000 6623800 7191300 6321000 6300700 6574400 4 4 1 4 4 4 4 4 4 4 4 3346700 5460100 0 4479400 4123800 3773500 3829700 4032500 3402000 3894800 4116100 3115900 5091200 254680 4628400 3944600 3893600 3886800 4082800 3505000 3809500 3948500 3 3 0 3 3 3 3 3 3 3 3 5000600000 2584700000 2415900000 2362 1711 2215 13910;13911;13912;13913;13914;13915 16776;16777;16778;16779;16780;16781;16782;16783;16784 16784 9 CPSPPMINLISVGGQHQGVFGLPR Oxidation (M) 2576.2992 0.29918227 1144 P50897 PPT1 Palmitoyl-protein thioesterase 1 yes yes 0 0 1 0 By MS/MS 4 0 1 1 69.142 69.218 3 4.0135E-07 22256 20211116_3431_TMUAki_TMT10x_P_F4 86.557 75.923 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2363 1144 2216 13916 16785 16785 1508 1 CQDVSAGSLQELALLTGIISK Unmodified 2202.1566 0.15658358 2352 Q92621 NUP205 Nuclear pore complex protein Nup205 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 81.508 81.514 3 6.6833E-14 28450 20211116_3435_TMUAki_TMT10x_P_F7 125.73 109.04 2215300 3618000 0 3328600 2708500 3271800 2757400 2386500 2222200 2304300 2621500 2062300 3374900 144920 3415300 2595300 3316700 2777900 2468600 2298300 2253900 2516500 2 2 0 2 2 2 2 2 2 2 2 1033700 1605300 0 1512500 958150 1795900 1132800 984120 821770 953400 1124300 962260 1497500 58376 1553800 921410 1793800 1130300 1040600 860360 932410 1075200 1 1 0 1 1 1 1 1 1 1 1 1181600 2012700 0 1816100 1750400 1475900 1624600 1402400 1400400 1350900 1497200 1100100 1877400 86547 1861500 1673900 1522900 1647500 1428000 1437900 1321500 1441300 1 1 0 1 1 1 1 1 1 1 1 497100000 258390000 238710000 2364 2352 2217 13917;13918 16786;16787 16786 2 CQEVISWLDANTLAEKDEFEHK Unmodified 2661.2381 0.23808138 596 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 0 1 By MS/MS By MS/MS 5 1.15 1 2 3 2 1 5 4 76.335 76.323 4;5 1.7762E-35 24636 20211116_3445_TMUAki_TMT10x_S_F6 194.24 178.34 39106000 66384000 170880 61571000 52580000 53399000 54225000 22491000 16464000 25727000 47193000 36408000 61925000 3084000 63030000 50435000 54209000 53748000 24524000 19492000 24993000 44574000 8 8 3 8 8 8 8 8 8 8 8 22397000 37579000 0 34126000 25710000 36618000 29675000 12324000 8795300 14309000 25706000 20850000 35052000 1432500 35095000 24721000 36605000 29247000 13816000 10461000 13893000 24274000 4 4 0 4 4 4 4 4 4 4 4 16708000 28805000 170880 27445000 26870000 16780000 24551000 10167000 7669100 11418000 21487000 15558000 26873000 1651500 27935000 25714000 17604000 24501000 10708000 9031000 11100000 20300000 4 4 3 4 4 4 4 4 4 4 4 11242000000 6256200000 4985900000 2365 596 2218 13919;13920;13921;13922;13923;13924;13925;13926;13927 16788;16789;16790;16791;16792;16793;16794;16795 16794 8 CQHAAEIITDLLR Unmodified 1538.7875 0.78751139 2408;2407 Q96AE4-2;Q96AE4 FUBP1 Far upstream element-binding protein 1 no no 0 0 0 0 By MS/MS By MS/MS 6.2 1.17 1 2 2 4 1 5 5 64.182 64.426 2;3 8.8797E-19 21114 20211116_3435_TMUAki_TMT10x_P_F7 182.71 151.42 28210000 47242000 91343 43247000 37247000 51276000 33406000 37462000 27815000 32271000 37171000 26266000 44067000 2406400 44521000 35614000 51431000 33913000 38631000 28873000 31732000 35568000 10 10 3 10 10 10 10 10 10 10 10 20726000 33390000 91343 31445000 26128000 44390000 25878000 26770000 19787000 23468000 26661000 19298000 31149000 1801900 32410000 25047000 44027000 26074000 28008000 20640000 23056000 25506000 7 7 3 7 7 7 7 7 7 7 7 7484000 13852000 0 11802000 11119000 6885600 7527800 10692000 8027600 8803000 10510000 6967800 12917000 604550 12111000 10567000 7403400 7839000 10623000 8232900 8675300 10061000 3 3 0 3 3 3 3 3 3 3 3 7820300000 4841800000 2978500000 2366 2408;2407 2219 13928;13929;13930;13931;13932;13933;13934;13935;13936;13937 16796;16797;16798;16799;16800;16801;16802;16803;16804;16805;16806;16807 16802 12 CQIIYPR Unmodified 948.48512 0.48512178 1821 Q15645 TRIP13 Pachytene checkpoint protein 2 homolog yes yes 0 0 0 0 By MS/MS 8 0 1 1 36.697 36.984 2 0.024422 8818 20211116_3436_TMUAki_TMT10x_P_F8 80.294 58.994 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2367 1821 2220 13938 16808 16808 1 CQNALQQVVAR Unmodified 1285.6561 0.65610329 1525 Q06210;Q06210-2 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes no 0 0 0 0 By MS/MS By matching 7.33 0.471 2 1 2 1 38.206 38.645 2;3 2.7261E-23 10787 20211116_3435_TMUAki_TMT10x_P_F7 245.16 154.25 531140 833130 13112 935010 1521300 1236700 762520 703280 686650 593710 778760 494640 777780 69664 951180 1440400 1229300 810790 738690 705140 584360 748390 2 2 1 2 2 2 2 2 2 2 2 531140 833130 13112 935010 1521300 1236700 762520 703280 686650 593710 778760 494640 777780 69664 951180 1440400 1229300 810790 738690 705140 584360 748390 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37449000 32152000 5297100 2368 1525 2221 13939;13940;13941 16809;16810 16809 2 CQSLQEELDFRK Unmodified 1551.7351 0.73514147 1505 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 49.679 49.863 3 3.8199E-15 13484 20211116_3444_TMUAki_TMT10x_S_F5 182.1 160.87 6164300 10780000 17608 12127000 6073300 5146800 5116900 8834100 9325000 8441600 10060000 5739700 10064000 520600 12172000 5800100 5756600 5370500 8784100 9328500 8260700 9682100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6164300 10780000 17608 12127000 6073300 5146800 5116900 8834100 9325000 8441600 10060000 5739700 10064000 520600 12172000 5800100 5756600 5370500 8784100 9328500 8260700 9682100 2 2 1 2 2 2 2 2 2 2 2 316280000 0 316280000 2369 1505 2222 13942;13943 16811;16812;16813 16812 3 CQSLTEDLEFR Unmodified 1396.6293 0.62927941 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 55.561 55.364 2 2.5E-27 19289 20211116_3441_TMUAki_TMT10x_S_F3 225.93 181.59 1910700 3114400 28969 3131800 3760500 5427800 2795700 3247600 2827400 2544400 2864800 1779300 2906100 211320 3228000 3583200 5338900 2887300 3390900 2876300 2514000 2762400 1 1 1 1 1 1 1 1 1 1 1 1910700 3114400 28969 3131800 3760500 5427800 2795700 3247600 2827400 2544400 2864800 1779300 2906100 211320 3228000 3583200 5338900 2887300 3390900 2876300 2514000 2762400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 664370000 664370000 0 2370 748 2223 13944;13945;13946 16814;16815;16816 16816 3 CQSLTEDLEFRK Unmodified 1524.7242 0.72424243 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.71 1.03 1 2 2 2 4 3 50.177 50.294 3 9.0935E-31 14713 20211116_3433_TMUAki_TMT10x_P_F5 267.23 224.39 57390000 95737000 863000 102300000 104550000 113410000 70161000 89114000 85097000 78294000 88745000 53442000 89357000 6164200 104070000 99433000 114300000 73428000 91507000 86048000 76912000 85496000 9 9 8 9 9 9 9 9 9 9 9 37618000 62319000 586650 68799000 84389000 95889000 53552000 58452000 55716000 51487000 57540000 35030000 58174000 4262000 70134000 80173000 95173000 55999000 61111000 56651000 50572000 55451000 6 6 5 6 6 6 6 6 6 6 6 19772000 33418000 276350 33501000 20163000 17521000 16610000 30661000 29382000 26807000 31204000 18412000 31183000 1902300 33931000 19261000 19130000 17429000 30396000 29397000 26340000 30045000 3 3 3 3 3 3 3 3 3 3 3 5846800000 3564400000 2282300000 2371 748 2224 13947;13948;13949;13950;13951;13952;13953 16817;16818;16819;16820;16821;16822;16823;16824;16825 16820 9 CQVFEETQIGGER Unmodified 1551.6988 0.69875596 2609 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 4 4 4 6 6 45.375 45.244 2;3 1.3914E-44 15174 20211116_3441_TMUAki_TMT10x_S_F3 294.49 270.46 10435000 16756000 87596 20777000 21841000 21432000 12784000 16720000 16018000 13458000 16567000 9715900 15650000 1011500 20922000 20713000 21687000 13541000 17139000 16174000 13278000 15964000 11 11 4 11 11 11 11 11 11 11 11 6940400 10553000 87596 13241000 18491000 18687000 10033000 10691000 10504000 8655300 10476000 6462600 9857500 787570 13400000 17520000 18522000 10634000 11212000 10665000 8537100 10107000 7 7 4 7 7 7 7 7 7 7 7 3494700 6202900 0 7535700 3350100 2745000 2751100 6028600 5513900 4802500 6090400 3253400 5793000 223910 7521900 3193000 3165800 2907400 5927100 5509000 4740900 5857300 4 4 0 4 4 4 4 4 4 4 4 2697500000 1977100000 720450000 2372 2609 2225 13954;13955;13956;13957;13958;13959;13960;13961;13962;13963;13964;13965 16826;16827;16828;16829;16830;16831;16832;16833;16834;16835;16836;16837;16838;16839 16837 14 CRDDSFFGETSHNYHK Unmodified 1998.8279 0.82787265 1026 P43243 MATR3 Matrin-3 yes yes 0 0 0 1 By MS/MS 4.67 0.471 1 2 3 33.844 33.816 4;5 1.2805E-10 8222 20211116_3433_TMUAki_TMT10x_P_F5 131.82 121.05 1878000 2941200 18133 4090800 4880500 4611400 2371200 2013500 2360000 1851500 2441200 1748700 2748800 210420 4099900 4617400 4607300 2536100 2173500 2404300 1814900 2352500 3 3 2 3 3 3 3 3 3 3 3 1878000 2941200 18133 4090800 4880500 4611400 2371200 2013500 2360000 1851500 2441200 1748700 2748800 210420 4099900 4617400 4607300 2536100 2173500 2404300 1814900 2352500 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 266850000 266850000 0 2373 1026 2226 13966;13967;13968 16840;16841;16842 16841 3 CRDDSFFGETSHNYHKFDSEYER Unmodified 2925.2049 0.20488377 1026 P43243 MATR3 Matrin-3 yes yes 0 0 0 2 By matching By MS/MS 4.5 0.5 1 1 1 1 41.529 41.628 6 0.0071126 10234 20211116_3444_TMUAki_TMT10x_S_F5 49.176 46.832 1402800 2212600 12324 2571500 1217200 1324500 1124100 2311300 2974800 2348600 2043600 1306200 2065900 125190 2579300 1165600 1448400 1202400 2301300 2912300 2292300 2000200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1402800 2212600 12324 2571500 1217200 1324500 1124100 2311300 2974800 2348600 2043600 1306200 2065900 125190 2579300 1165600 1448400 1202400 2301300 2912300 2292300 2000200 1 1 1 1 1 1 1 1 1 1 1 584050000 320510000 263550000 2374 1026 2227 13969;13970 16843 16843 1 CREMDEQIR Unmodified 1235.5387 0.53869027 526;527 P06753-2;P06753-3;P06753-6 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 1 By MS/MS 1 0 1 1 27.509 27.509 3 0.067983 5026 20211116_3428_TMUAki_TMT10x_P_F1 50.108 34.964 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2375 526;527 2228 13971 16844 16844 1 CRVDLPLAVLSK Unmodified 1369.7752 0.77515579 2822 Q9H773 DCTPP1 dCTP pyrophosphatase 1 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 61.394 61.156 3 2.5405E-08 20197 20211116_3429_TMUAki_TMT10x_P_F2 121.24 76.474 3364800 6182400 0 5977700 3827600 2894400 3000900 3518600 2739000 3510000 4354600 3132800 5768100 268900 6066600 3648200 3152800 3079000 3545700 2855200 3428400 4150700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3364800 6182400 0 5977700 3827600 2894400 3000900 3518600 2739000 3510000 4354600 3132800 5768100 268900 6066600 3648200 3152800 3079000 3545700 2855200 3428400 4150700 1 1 0 1 1 1 1 1 1 1 1 627680000 0 627680000 2376 2822 2229 13972;13973 16845;16846 16845 2 CSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEK Oxidation (M) 3651.696 0.69604493 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 1 1 By MS/MS By MS/MS 3.29 0.7 1 3 3 4 3 77.371 77.309 3;4 5.8809E-16 27159 20211116_3430_TMUAki_TMT10x_P_F3 119.35 117.54 7699000 14355000 162900 11853000 11481000 13840000 11506000 9863000 9683300 10631000 12127000 7169700 13386000 706940 12299000 11019000 13887000 11613000 10252000 10018000 10351000 11623000 4 4 3 4 4 4 4 4 4 4 4 3192600 5644000 52048 4692100 3245800 6867400 4405300 4210500 4306400 4168200 5006200 2973000 5262900 177800 4886500 3144500 6802200 4404800 4413800 4410200 4072600 4807600 2 2 1 2 2 2 2 2 2 2 2 4506400 8711300 110850 7161000 8235600 6972600 7100200 5652400 5376900 6462600 7120500 4196700 8122800 529140 7412100 7874800 7085200 7208000 5837900 5607400 6278300 6814900 2 2 2 2 2 2 2 2 2 2 2 11327000000 7179600000 4147900000 2377 1779 2230 13974;13975;13976;13977;13978;13979;13980 16847;16848;16849;16850 16847 2381 4 CSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK Unmodified 3595.7967 0.79674526 777 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 1 By matching By MS/MS 3.67 0.471 1 2 2 1 78.941 78.905 3 1.2071E-20 26658 20211116_3442_TMUAki_TMT10x_S_F4 130.32 116.47 2561800 4108200 30020 3424000 3866100 2697600 3553700 2296000 2212700 2310200 3154900 2385500 3830800 258630 3530500 3700900 2783900 3579500 2355100 2343200 2255700 3014300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2561800 4108200 30020 3424000 3866100 2697600 3553700 2296000 2212700 2310200 3154900 2385500 3830800 258630 3530500 3700900 2783900 3579500 2355100 2343200 2255700 3014300 1 1 1 1 1 1 1 1 1 1 1 4141700000 2516700000 1625000000 2378 777 2231 13981;13982;13983 16851 16851 1 CSENKLPAELQELPGLSHQYWSAPSDK Unmodified 3083.4658 0.46584948 829 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes yes 0 0 0 1 By MS/MS By matching 7 0 2 1 1 68.046 68.482 4 4.4472E-13 22910 20211116_3435_TMUAki_TMT10x_P_F7 119.26 109.38 3344100 5777200 0 6677000 4110100 6063700 3845900 2925500 2536600 3112400 4043100 3113600 5394100 279270 6738900 3933700 6144600 3874400 3138400 2691300 3032100 3853600 1 1 0 1 1 1 1 1 1 1 1 3344100 5777200 0 6677000 4110100 6063700 3845900 2925500 2536600 3112400 4043100 3113600 5394100 279270 6738900 3933700 6144600 3874400 3138400 2691300 3032100 3853600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 944610000 474740000 469870000 2379 829 2232 13984;13985 16852 16852 1 CSGPGLSPGMVR Unmodified 1216.5693 0.56926211 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS 7 0 1 1 36.256 36.694 2 1.2231E-07 10035 20211116_3435_TMUAki_TMT10x_P_F7 115.7 106.94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2380 755 2233 13986 16853 16853 1 CSILAAANPAYGR Unmodified 1362.6714 0.671419 913 P33993;P33993-3 MCM7 DNA replication licensing factor MCM7 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 4 2 3 3 49.285 49.231 2;3 2.3724E-22 13732 20211116_3428_TMUAki_TMT10x_P_F1 201.84 159.65 5159100 8316200 61826 9088100 9298100 11215000 6838300 7533900 6827800 6367900 7191900 4804100 7762800 543310 9248600 8857300 11211000 7064700 7810800 6959500 6267200 6926500 4 4 4 4 4 4 4 4 4 4 4 4639700 7348400 54517 8117000 8869000 10820000 6503600 6548900 5942500 5551700 6368400 4320500 6859700 494710 8266800 8447900 10760000 6703200 6844200 6085100 5463200 6130100 3 3 3 3 3 3 3 3 3 3 3 519320 967760 7309.1 971110 429060 395200 334670 984980 885350 816160 823570 483600 903040 48603 981850 409470 451380 361450 966640 874400 804060 796380 1 1 1 1 1 1 1 1 1 1 1 529470000 392080000 137390000 2381 913 2234 13987;13988;13989;13990;13991;13992 16854;16855;16856;16857;16858 16854 5 CSVIRDSLLQDGEFSMDLR Oxidation (M) 2256.0515 0.051466583 540 P07737 PFN1 Profilin-1 yes yes 0 0 1 1 By MS/MS By MS/MS 4.22 1.31 1 2 2 2 2 5 4 62.418 62.331 3 2.5614E-17 19355 20211116_3431_TMUAki_TMT10x_P_F4 141.07 116.28 61230000 104050000 223130 83258000 87694000 114770000 72090000 104560000 92585000 83581000 91406000 57010000 97013000 3760400 86877000 83682000 114750000 74575000 106200000 93251000 82494000 88212000 18 18 7 18 18 18 18 18 18 18 18 34739000 59086000 121560 47010000 38722000 83162000 41315000 57658000 52028000 47318000 51062000 32344000 55089000 2126800 49351000 37181000 81917000 42103000 59600000 52426000 46639000 49287000 10 10 3 10 10 10 10 10 10 10 10 26490000 44965000 101580 36248000 48972000 31608000 30776000 46906000 40557000 36263000 40344000 24665000 41925000 1633600 37526000 46502000 32830000 32471000 46600000 40824000 35855000 38925000 8 8 4 8 8 8 8 8 8 8 8 15689000000 7742700000 7946400000 2382 540 2235 13993;13994;13995;13996;13997;13998;13999;14000;14001 16859;16860;16861;16862;16863;16864;16865;16866;16867;16868;16869;16870;16871;16872;16873;16874;16875;16876 16864 471 18 CSVIRDSLYVDGDCTMDIR Oxidation (M) 2290.0028 0.002801831 920;921 P35080;P35080-2 PFN2 Profilin-2 no no 0 0 1 1 By MS/MS By MS/MS 4 0 2 1 1 50.2 50.347 3 9.1919E-05 14501 20211116_3431_TMUAki_TMT10x_P_F4 76.761 56.11 2868800 4706700 0 6359900 5667000 5869900 3752100 4517500 4314400 3847500 4267000 2670900 4398100 245280 6364100 5383600 5979700 3923400 4641200 4362800 3785300 4117700 2 2 0 2 2 2 2 2 2 2 2 1724500 2684000 0 3987500 4451900 4905200 2723100 2731400 2735300 2460000 2659300 1605500 2509300 154890 3989600 4223500 4891600 2852900 2878700 2779500 2413700 2567600 1 1 0 1 1 1 1 1 1 1 1 1144300 2022800 0 2372400 1215200 964690 1028900 1786100 1579100 1387500 1607800 1065500 1888800 90383 2374500 1160100 1088100 1070500 1762600 1583400 1371600 1550100 1 1 0 1 1 1 1 1 1 1 1 607550000 380230000 227310000 2383 920;921 2236 14002;14003 16877;16878 16877 1160 2 CSVLAAANPVYGR Unmodified 1376.6871 0.68706906 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 0 By MS/MS 1 0 1 1 48.824 48.573 3 1.4898E-08 15495 20211116_3439_TMUAki_TMT10x_S_F1 114.24 91.706 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2384 799 2237 14004 16879 16879 1 CSVLAAANSVFGR Unmodified 1350.6714 0.671419 912 P33992 MCM5 DNA replication licensing factor MCM5 yes yes 0 0 0 0 By MS/MS By MS/MS 3.75 0.433 1 3 1 3 64.608 64.436 2;3 6.7669E-30 20326 20211116_3431_TMUAki_TMT10x_P_F4 251.24 222.33 16410000 29080000 117680 25454000 20339000 21505000 18602000 18594000 14641000 18065000 22937000 15279000 27121000 1453900 26165000 19461000 22086000 18837000 19037000 15362000 17665000 21869000 4 4 2 4 4 4 4 4 4 4 4 4632800 7907200 0 6661100 4976000 8755100 5735800 5045600 3591800 4824300 6170400 4313300 7373600 353060 6914700 4788000 8706600 5712000 5310600 3839400 4720800 5872600 1 1 0 1 1 1 1 1 1 1 1 11777000 21173000 117680 18793000 15363000 12750000 12867000 13549000 11049000 13240000 16766000 10966000 19747000 1100800 19250000 14673000 13379000 13125000 13726000 11523000 12944000 15997000 3 3 2 3 3 3 3 3 3 3 3 1404700000 491430000 913230000 2385 912 2238 14005;14006;14007;14008 16880;16881;16882;16883;16884 16880 5 CSVLPLSQNQEFMPFVK Oxidation (M) 2038.9856 0.98561885 1001 P41250 GARS Glycine--tRNA ligase yes yes 0 0 1 0 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 74.565 74.497 3 9.5685E-06 24111 20211116_3436_TMUAki_TMT10x_P_F8 93.909 83.275 13061000 24031000 52950 18998000 19429000 29515000 20440000 25599000 21419000 25664000 22746000 12160000 22405000 1036900 19894000 18646000 29331000 20711000 26227000 21795000 25063000 21901000 4 4 1 4 4 4 4 4 4 4 4 6117200 11237000 52950 8953100 7462500 17923000 9136000 12634000 10878000 12364000 10022000 5695900 10477000 546250 9429100 7198800 17587000 9233500 13104000 10960000 12087000 9694200 2 2 1 2 2 2 2 2 2 2 2 6944300 12794000 0 10045000 11967000 11592000 11304000 12965000 10541000 13300000 12724000 6464500 11928000 490640 10465000 11448000 11745000 11477000 13123000 10835000 12976000 12207000 2 2 0 2 2 2 2 2 2 2 2 3449100000 2117200000 1331900000 2386 1001 2239 14009;14010;14011 16885;16886;16887;16888 16885 1287 4 CSVPFTPIEFHYENTR Unmodified 1995.9149 0.91489675 3090 Q9UBU9;Q9UBU9-2 NXF1 Nuclear RNA export factor 1 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 58.584 58.622 3 9.166E-11 17390 20211116_3445_TMUAki_TMT10x_S_F6 130.06 116.92 2276400 3729200 0 3502100 2293700 2044800 2272300 2564600 2490100 2416000 2996000 2119400 3478900 170810 3566900 2197600 2184700 2312800 2576900 2541600 2365700 2874400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2276400 3729200 0 3502100 2293700 2044800 2272300 2564600 2490100 2416000 2996000 2119400 3478900 170810 3566900 2197600 2184700 2312800 2576900 2541600 2365700 2874400 1 1 0 1 1 1 1 1 1 1 1 443930000 0 443930000 2387 3090 2240 14012;14013 16889;16890 16890 2 CTGGEVGATSALAPK Unmodified 1417.6871 0.68712864 864 P30050;P30050-2 RPL12 60S ribosomal protein L12 yes no 0 0 0 0 By MS/MS By MS/MS 4.1 1.14 1 2 3 3 1 4 6 40.955 41.007 2;3 1.2881E-32 10937 20211116_3431_TMUAki_TMT10x_P_F4 199.82 183.25 16947000 28169000 96455 29358000 36074000 32587000 21829000 19845000 21550000 18088000 25099000 15777000 26289000 1483900 29914000 34219000 32712000 22878000 20767000 22062000 17738000 24102000 13 13 7 13 13 13 13 13 13 13 13 11667000 18635000 76566 19858000 30272000 27966000 16434000 13044000 14528000 12442000 17312000 10862000 17393000 1056600 20293000 28667000 27654000 17334000 13997000 14962000 12176000 16614000 8 8 5 8 8 8 8 8 8 8 8 5279300 9534300 19889 9500100 5802200 4621700 5394900 6801000 7021900 5646100 7787200 4915400 8896400 427300 9621200 5552000 5058200 5543900 6770200 7099600 5561900 7488300 5 5 2 5 5 5 5 5 5 5 5 2691900000 1309400000 1382600000 2388 864 2241 14014;14015;14016;14017;14018;14019;14020;14021;14022;14023 16891;16892;16893;16894;16895;16896;16897;16898;16899;16900;16901;16902;16903;16904;16905 16896 15 CTLCSQPGATIGCEIK Unmodified 1793.811 0.8110253 2146 Q8IWS0;Q8IWS0-5;Q8IWS0-3 PHF6 PHD finger protein 6 yes no 0 0 0 0 By MS/MS 6 0 1 1 51.016 51.158 3 0.012855 14283 20211116_3445_TMUAki_TMT10x_S_F6 46.892 35.452 1401300 2467300 10285 2600400 1557800 1328100 1135300 2357400 2285400 2267900 2272400 1304900 2302800 127960 2624400 1483600 1454600 1209300 2342200 2274200 2218700 2192500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1401300 2467300 10285 2600400 1557800 1328100 1135300 2357400 2285400 2267900 2272400 1304900 2302800 127960 2624400 1483600 1454600 1209300 2342200 2274200 2218700 2192500 1 1 1 1 1 1 1 1 1 1 1 112630000 0 112630000 2389 2146 2242 14024 16906 16906 1 CTPACISFGPK Unmodified 1236.5631 0.5631141 916 P34932;P34932-2 HSPA4 Heat shock 70 kDa protein 4 yes no 0 0 0 0 By MS/MS 1 0 1 1 51.321 51.049 3 0.001843 16507 20211116_3439_TMUAki_TMT10x_S_F1 68.536 50.727 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2390 916 2243 14025 16907 16907 1 CTPSVISFGSK Unmodified 1181.5751 0.575059 2345 Q92598;Q92598-2;Q92598-3 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 4 2 3 3 53.469 53.325 2;3 9.6829E-18 15405 20211116_3428_TMUAki_TMT10x_P_F1 198.25 164.04 3267800 5321600 33241 6171300 5364500 6027000 4055900 5821100 6072700 4976700 5613000 3042900 4968800 331270 6233600 5112800 6144200 4245000 5903600 6073400 4895300 5428900 2 2 2 2 2 2 2 2 2 2 2 1961400 3048200 19871 3392800 3992300 4932400 2883600 3274400 3572800 3100700 3042000 1826400 2845600 209580 3459900 3801400 4892500 3004300 3407700 3585700 3035500 2951000 1 1 1 1 1 1 1 1 1 1 1 1306400 2273400 13370 2778500 1372100 1094600 1172300 2546700 2500000 1876000 2571000 1216500 2123200 121690 2773700 1311400 1251600 1240700 2496000 2487700 1859800 2477900 1 1 1 1 1 1 1 1 1 1 1 252380000 122360000 130020000 2391 2345 2244 14026;14027;14028;14029;14030;14031 16908;16909;16910;16911;16912;16913 16909 6 CTVDVPEDLREACANENAHK Unmodified 2327.027 0.027042747 1148 P51114;P51114-2;P51114-3 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 3 0.894 2 1 2 3 2 43.518 43.536 4 4.9268E-19 11699 20211116_3440_TMUAki_TMT10x_S_F2 159.14 132.67 2933300 4401100 18162 5585500 5248700 4523100 2875500 3538300 3469600 3097800 4169500 2730900 4111100 242540 5598600 4970900 4651300 3059200 3634000 3528500 3043700 4000500 4 4 3 4 4 4 4 4 4 4 4 1516200 2190400 11598 2739000 4210700 3684900 2163300 1829800 1810400 1623600 2243400 1411400 2046000 124240 2769700 3983400 3653900 2290400 1947900 1872500 1594200 2150700 2 2 1 2 2 2 2 2 2 2 2 1417100 2210600 6564.9 2846500 1038000 838240 712190 1708500 1659200 1474300 1926100 1319500 2065100 118290 2828900 987480 997370 768760 1686200 1656000 1449500 1849800 2 2 2 2 2 2 2 2 2 2 2 896420000 542820000 353600000 2392 1148 2245 14032;14033;14034;14035;14036 16914;16915;16916;16917 16916 4 CTVFHGAQVEDAFR Unmodified 1635.7464 0.74637486 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 5.29 1.03 2 2 2 1 3 4 45.069 45.267 3 1.2257E-31 12703 20211116_3433_TMUAki_TMT10x_P_F5 218.6 196.28 21635000 36192000 225490 39820000 30622000 29846000 21745000 25268000 23446000 22640000 28906000 20145000 33785000 1978800 40218000 29143000 30918000 22573000 25843000 23972000 22220000 27716000 11 11 7 11 11 11 11 11 11 11 11 9797000 15450000 90105 16856000 18595000 20648000 12474000 11258000 10233000 9614500 12927000 9122400 14422000 979140 17153000 17679000 20590000 12903000 11871000 10604000 9457700 12387000 5 5 2 5 5 5 5 5 5 5 5 11838000 20742000 135380 22964000 12027000 9198300 9271100 14010000 13213000 13026000 15979000 11023000 19363000 999650 23064000 11464000 10328000 9670200 13972000 13367000 12762000 15329000 6 6 5 6 6 6 6 6 6 6 6 7960600000 3991200000 3969400000 2393 1092 2246 14037;14038;14039;14040;14041;14042;14043 16918;16919;16920;16921;16922;16923;16924;16925;16926;16927;16928 16920 11 CTVIAAANPIGGR Unmodified 1298.6765 0.67650438 1114 P49736 MCM2 DNA replication licensing factor MCM2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 3 3 3 3 44.53 44.544 2;3 2.7276E-14 11893 20211116_3436_TMUAki_TMT10x_P_F8 164.48 128.05 7508000 11650000 6091.1 13129000 13606000 13523000 8305200 8799700 8829500 7682200 10163000 6989900 10876000 619130 13295000 12907000 13646000 8717700 9151800 9006900 7548900 9762900 6 6 1 6 6 6 6 6 6 6 6 5770600 8871600 6091.1 10104000 12085000 12163000 6966000 6620700 6725800 5889000 7655100 5372600 8282700 514370 10251000 11456000 12140000 7326100 6989300 6885800 5781700 7355900 4 4 1 4 4 4 4 4 4 4 4 1737400 2778500 0 3025200 1520900 1360000 1339200 2178900 2103700 1793200 2508200 1617400 2593500 104750 3043900 1451300 1506600 1391600 2162500 2121100 1767200 2407100 2 2 0 2 2 2 2 2 2 2 2 552090000 410170000 141920000 2394 1114 2247 14044;14045;14046;14047;14048;14049 16929;16930;16931;16932;16933;16934;16935 16931 7 CTVVSVPDSLLWR Unmodified 1530.7864 0.78644876 2430 Q96CX2 KCTD12 BTB/POZ domain-containing protein KCTD12 yes yes 0 0 0 0 By MS/MS 8 0 1 1 73.052 72.895 2 0.0012507 22955 20211116_3447_TMUAki_TMT10x_S_F8 76.068 53.577 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2395 2430 2248 14050 16936 16936 1 CTYLVLDEADR Unmodified 1353.6235 0.62346575 2368 Q92841;Q92841-3;Q92841-1;Q92841-2 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.957 1 2 2 1 3 3 53.243 53.091 2 1.0052E-18 17284 20211116_3430_TMUAki_TMT10x_P_F3 227.27 198.87 12803000 21563000 122710 21847000 17701000 21095000 14427000 21357000 19146000 17829000 19407000 11921000 20122000 1097900 22257000 16888000 21543000 14951000 21596000 19281000 17558000 18713000 6 6 2 6 6 6 6 6 6 6 6 6057000 9936700 83336 9672300 10619000 15249000 8800800 10523000 9675700 8650100 9201200 5639900 9271000 589400 9969400 10138000 15084000 9049200 10882000 9788200 8525300 8890700 3 3 1 3 3 3 3 3 3 3 3 6745900 11627000 39371 12175000 7081600 5846700 5625700 10834000 9470700 9178600 10206000 6280600 10851000 508540 12287000 6749900 6458600 5901600 10714000 9492700 9032500 9822600 3 3 1 3 3 3 3 3 3 3 3 1724500000 1013100000 711320000 2396 2368 2249 14051;14052;14053;14054;14055;14056 16937;16938;16939;16940;16941;16942 16939 6 CVAALAR Unmodified 759.40614 0.40614318 64 O00154-4;O00154;O00154-6;O00154-7;O00154-5;O00154-2;O00154-3;Q6ZUV0 ACOT7;ACOT7L Cytosolic acyl coenzyme A thioester hydrolase;Putative cytosolic acyl coenzyme A thioester hydrolase-like yes no 0 0 0 0 By MS/MS 5 0 1 1 31.743 31.885 2 0.094778 6302 20211116_3444_TMUAki_TMT10x_S_F5 59.564 33.223 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2397 64 2250 14057 16943 16943 1 CVELVHEEMQR Oxidation (M) 1444.6439 0.64388362 87 O00429;O00429-2;O00429-4;O00429-3;O00429-5;O00429-9;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 1 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 32.426 32.27 3 0.011683 8363 20211116_3429_TMUAki_TMT10x_P_F2 58.674 42.142 727580 1126900 1960.4 1099100 1049500 1209200 749450 932810 963850 845240 1020500 677390 1051400 57035 1124900 998220 1218800 782520 959750 973180 829110 982650 2 2 1 2 2 2 2 2 2 2 2 342160 509840 1960.4 540610 665300 788670 391370 408110 457180 423850 488680 318600 475850 34721 553050 631160 779590 413340 434610 463340 413300 470430 1 1 1 1 1 1 1 1 1 1 1 385420 617090 0 558510 384150 420500 358080 524710 506670 421390 531780 358790 575590 22314 571850 367060 439230 369180 525140 509840 415810 512210 1 1 0 1 1 1 1 1 1 1 1 89811000 71486000 18325000 2398 87 2251 14058;14059;14060;14061 16944;16945;16946 16944 65 3 CVELVHEEMQR Unmodified 1428.649 0.648969 87 O00429;O00429-2;O00429-4;O00429-3;O00429-5;O00429-9;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 35.19 35.284 3 0.0007807 11823 20211116_3441_TMUAki_TMT10x_S_F3 79.697 68.129 159570 249570 10809 283530 171720 177110 171670 192670 211790 176390 231580 148660 233000 23473 285260 165310 187340 175380 194620 214410 172940 222790 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 159570 249570 10809 283530 171720 177110 171670 192670 211790 176390 231580 148660 233000 23473 285260 165310 187340 175380 194620 214410 172940 222790 1 1 1 1 1 1 1 1 1 1 1 5565600 0 5565600 2399 87 2251 14062;14063 16947;16948 16948 2 CVFELPAENDKPHDVEINK Unmodified 2253.0736 0.073582234 418 O95292 VAPB Vesicle-associated membrane protein-associated protein B/C yes yes 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 54.828 54.966 4 2.613E-08 15866 20211116_3445_TMUAki_TMT10x_S_F6 109.87 101.05 21028000 34965000 207910 38673000 27181000 32026000 21776000 29121000 26409000 25320000 27830000 19580000 32640000 1982600 39092000 25937000 32971000 22514000 29641000 26714000 24886000 26803000 4 4 2 4 4 4 4 4 4 4 4 9792100 16147000 207910 17685000 16153000 21716000 13105000 13186000 12267000 11475000 12696000 9119000 15073000 1094700 17993000 15424000 21683000 13426000 13785000 12532000 11277000 12234000 2 2 2 2 2 2 2 2 2 2 2 11236000 18817000 0 20988000 11028000 10310000 8671000 15935000 14142000 13845000 15134000 10461000 17567000 887860 21098000 10512000 11288000 9087900 15855000 14183000 13608000 14568000 2 2 0 2 2 2 2 2 2 2 2 3611700000 1538500000 2073200000 2400 418 2252 14064;14065;14066;14067 16949;16950;16951;16952 16952 4 CVICDSYVRPCTLVR Unmodified 1896.9008 0.90084336 2069 Q7RTV0 PHF5A PHD finger-like domain-containing protein 5A yes yes 0 0 0 1 By MS/MS By MS/MS 3 2.92 2 1 1 1 3 48.459 48.34 3 8.696E-44 13312 20211116_3428_TMUAki_TMT10x_P_F1 266.15 235.19 7677000 14424000 41932 14152000 12142000 15805000 9379700 12300000 10928000 10325000 11625000 7148300 13458000 731960 14481000 11575000 15920000 9706700 12623000 11074000 10165000 11193000 5 5 4 5 5 5 5 5 5 5 5 4625600 8520000 18276 7954600 8746100 12918000 7012300 7183300 6313000 6126900 6732700 4307000 7947900 452110 8229200 8343300 12725000 7181900 7561300 6467900 6027400 6481800 3 3 2 3 3 3 3 3 3 3 3 3051400 5904300 23656 6197100 3396100 2886500 2367500 5116400 4615000 4198100 4892600 2841300 5510400 279860 6251800 3231900 3194900 2524800 5061900 4606400 4137900 4711200 2 2 2 2 2 2 2 2 2 2 2 1834500000 804220000 1030200000 2401 2069 2253 14068;14069;14070;14071 16953;16954;16955;16956;16957;16958 16955 6 CVICGGPGVSDAYYCK Unmodified 1804.7583 0.75826145 2069 Q7RTV0 PHF5A PHD finger-like domain-containing protein 5A yes yes 0 0 0 0 By MS/MS 7 0 1 1 53.429 54.138 3 0.00016467 16979 20211116_3435_TMUAki_TMT10x_P_F7 78.814 67.709 2584800 5060300 157820 5469200 4702900 7473000 4545200 4330300 4152900 3710400 3803600 2407900 4723300 391050 5580600 4515000 7418800 4606500 4542800 4229600 3649300 3680000 1 1 1 1 1 1 1 1 1 1 1 2584800 5060300 157820 5469200 4702900 7473000 4545200 4330300 4152900 3710400 3803600 2407900 4723300 391050 5580600 4515000 7418800 4606500 4542800 4229600 3649300 3680000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 463640000 463640000 0 2402 2069 2254 14072 16959 16959 1 CVIFEIPGAPDDEAVR Unmodified 1786.856 0.85598488 2495 Q96I25 RBM17 Splicing factor 45 yes yes 0 0 0 0 By MS/MS 4 0 1 1 72.828 72.874 3 0.003214 23798 20211116_3431_TMUAki_TMT10x_P_F4 59.862 46.662 2628100 3707400 0 3465600 2206000 4100600 2956500 1979100 2259900 2368100 2702100 2446700 3458500 168790 3562000 2131300 4090600 2938100 2130900 2345300 2296800 2593000 1 1 0 1 1 1 1 1 1 1 1 2628100 3707400 0 3465600 2206000 4100600 2956500 1979100 2259900 2368100 2702100 2446700 3458500 168790 3562000 2131300 4090600 2938100 2130900 2345300 2296800 2593000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 243890000 243890000 0 2403 2495 2255 14073 16960 16960 1 CVKVDLSEK Unmodified 1076.5536 0.55359527 1026 P43243;P43243-2 MATR3 Matrin-3 yes no 0 0 0 1 By MS/MS 6 0 1 1 40.93 41.095 3 0.00011386 10244 20211116_3445_TMUAki_TMT10x_S_F6 96.229 56.925 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2404 1026 2256 14074 16961 16961 1 CVLNEGMPIYR Oxidation (M) 1366.6373 0.63734168 889 P31689;P31689-2 DNAJA1 DnaJ homolog subfamily A member 1 yes no 0 0 1 0 By MS/MS By MS/MS 4.71 1.03 1 2 2 2 3 4 43.331 43.375 2 0.00052441 12025 20211116_3442_TMUAki_TMT10x_S_F4 93.178 80.388 4929500 8377100 9769.4 9523500 8185000 8947200 5194800 7153400 7759000 5534800 7044800 4589500 7821000 411880 9625900 7770200 9110100 5505000 7315200 7755900 5472200 6818000 5 5 2 5 5 5 5 5 5 5 5 3072800 5127800 9769.4 5833100 6650200 7592300 4033700 4305900 4668400 3417100 4282400 2861000 4787400 296110 5927200 6310200 7552200 4248000 4517200 4707800 3373900 4143000 3 3 2 3 3 3 3 3 3 3 3 1856700 3249300 0 3690400 1534800 1354900 1161200 2847500 3090600 2117700 2762500 1728500 3033600 115770 3698800 1460000 1557900 1257100 2798000 3048100 2098300 2675000 2 2 0 2 2 2 2 2 2 2 2 1364500000 881030000 483450000 2405 889 2257 14075;14076;14077;14078;14079;14080;14081 16962;16963;16964;16965;16966;16967 16965 1075 6 CVLNEGMPIYR Unmodified 1350.6424 0.64242706 889 P31689;P31689-2 DNAJA1 DnaJ homolog subfamily A member 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 52.97 53.079 2 5.5484E-24 15065 20211116_3445_TMUAki_TMT10x_S_F6 255.07 216.25 8876400 14738000 32852 16592000 9907600 8718100 7548900 5903100 5299600 5495300 10140000 8264900 13759000 756930 16678000 9441000 9303800 7710900 6131800 5661600 5383800 9631400 2 2 1 2 2 2 2 2 2 2 2 3551600 5830400 32852 6787800 5269400 5619400 3966900 2378400 2402700 2231100 4071600 3307100 5444000 349130 6839600 5021800 5723900 4043500 2577300 2572000 2185000 3876100 1 1 1 1 1 1 1 1 1 1 1 5324800 8907300 0 9804600 4638300 3098600 3581900 3524800 2896900 3264300 6067900 4957700 8314800 407800 9838600 4419300 3579900 3667300 3554500 3089600 3198800 5755300 1 1 0 1 1 1 1 1 1 1 1 1043000000 500420000 542550000 2406 889 2257 14082;14083;14084;14085 16968;16969;16970;16971 16971 4 CVLPEEDSGELAKPK Unmodified 1670.8185 0.81853675 3284 Q9Y3F4;Q9Y3F4-2 STRAP Serine-threonine kinase receptor-associated protein yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 47.54 47.695 3 5.3858E-07 13726 20211116_3433_TMUAki_TMT10x_P_F5 116.86 107.1 2180700 3020300 0 4317400 6914600 5909800 3084000 2812700 3573100 2315200 3315700 2030200 2823100 226750 4336700 6532400 5852700 3343600 3001200 3604500 2281600 3206500 1 1 0 1 1 1 1 1 1 1 1 2180700 3020300 0 4317400 6914600 5909800 3084000 2812700 3573100 2315200 3315700 2030200 2823100 226750 4336700 6532400 5852700 3343600 3001200 3604500 2281600 3206500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 692840000 692840000 0 2407 3284 2258 14086;14087 16972 16972 1 CVPLYHPYQK Unmodified 1303.6383 0.63832796 3159 Q9UKN8 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 0 0 0 0 By MS/MS 8 0 1 1 40.755 40.97 3 0.10092 10441 20211116_3436_TMUAki_TMT10x_P_F8 37.153 23.474 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2408 3159 2259 14088 16973 16973 1 CVSELVIESR Unmodified 1190.5965 0.59652272 2184 Q8N1F7;Q8N1F7-2 NUP93 Nuclear pore complex protein Nup93 yes no 0 0 0 0 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 48.4 48.463 2 0.00062204 16551 20211116_3441_TMUAki_TMT10x_S_F3 85.744 60.868 3817900 6356500 44159 6698300 4683200 4751100 3359100 5381500 4357900 4475500 5164300 3555200 5932500 369810 6780100 4459900 4974400 3507500 5412700 4418300 4408400 4956900 2 2 2 2 2 2 2 2 2 2 2 1215000 1983800 38001 2181100 2250300 2637600 1415500 1570500 1469500 1250300 1651900 1131500 1851900 150650 2217900 2139000 2634900 1481100 1641000 1499100 1234300 1587900 1 1 1 1 1 1 1 1 1 1 1 2603000 4372600 6157.9 4517300 2432900 2113500 1943700 3811100 2888400 3225200 3512500 2423600 4080700 219160 4562200 2320800 2339500 2026400 3771600 2919200 3174000 3369000 1 1 1 1 1 1 1 1 1 1 1 329070000 167080000 161990000 2409 2184 2260 14089;14090;14091;14092 16974;16975;16976;16977 16976 4 CYDIIPETLLELGEIPTLK Unmodified 2216.165 0.165023 1618 Q13309;Q13309-4 SKP2 S-phase kinase-associated protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.894 2 1 2 2 3 82.775 82.777 3 0.0061021 26944 20211116_3444_TMUAki_TMT10x_S_F5 52.185 41.904 2817900 4888100 37295 4459600 3352100 3710800 3654200 2674200 2782600 3025500 3799900 2623900 4559500 260340 4568600 3223000 3803200 3663800 2781800 2905000 2940400 3634100 5 5 3 5 5 5 5 5 5 5 5 629910 1012600 16200 914080 616860 1141900 659790 604910 651670 705930 796980 586630 944470 67138 942880 593540 1137200 666760 645160 668470 685280 764320 1 1 1 1 1 1 1 1 1 1 1 2188000 3875500 21096 3545500 2735200 2568900 2994400 2069300 2130900 2319600 3002900 2037300 3615100 193200 3625700 2629400 2666000 2997100 2136600 2236600 2255100 2869800 4 4 2 4 4 4 4 4 4 4 4 332600000 107550000 225050000 2410 1618 2261 14093;14094;14095;14096;14097 16978;16979;16980;16981;16982 16980 5 CYEMASHLR Oxidation (M) 1181.4958 0.49576282 540 P07737;CON__P02584 PFN1 Profilin-1 yes no 0 0 1 0 By MS/MS By MS/MS 3.5 0.957 1 2 2 1 4 2 27.968 27.869 2;3 0.00045592 5900 20211116_3433_TMUAki_TMT10x_P_F5 100.71 89.879 832580 1392900 10841 1267500 1396900 1282700 952210 677630 740030 642510 1027200 775300 1299300 86947 1302200 1328900 1292200 982550 718460 772330 628960 982060 6 6 5 6 6 6 6 6 6 6 6 675520 1127000 9960 1054100 1231500 1153400 776970 554870 613010 529430 845770 629050 1051300 72987 1082000 1170000 1155500 806800 593600 639070 518120 808680 5 5 4 5 5 5 5 5 5 5 5 157070 265950 880.69 213440 165390 129280 175250 122760 127020 113080 181480 146250 247960 13959 220200 158890 136750 175750 124860 133260 110840 173380 1 1 1 1 1 1 1 1 1 1 1 63253000 46266000 16988000 2411 540 2262 14098;14099;14100;14101;14102;14103 16983;16984;16985;16986;16987;16988;16989 16987 472 7 CYEMASHLR Unmodified 1165.5008 0.5008482 540 P07737;CON__P02584 PFN1 Profilin-1 yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 32.678 32.661 3 2.3044E-06 7729 20211116_3433_TMUAki_TMT10x_P_F5 166.09 117.29 1786200 2855200 0 2820800 3810300 3168700 2213500 1606100 1717800 1470700 2255500 1663100 2664000 168690 2885300 3612900 3171500 2313400 1707800 1788300 1441900 2159100 2 2 0 2 2 2 2 2 2 2 2 1786200 2855200 0 2820800 3810300 3168700 2213500 1606100 1717800 1470700 2255500 1663100 2664000 168690 2885300 3612900 3171500 2313400 1707800 1788300 1441900 2159100 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 233460000 233460000 0 2412 540 2262 14104;14105 16990;16991 16991 2 CYLLVHQAK Unmodified 1130.5906 0.59064948 1552 Q08J23;Q08J23-2 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 0 0 0 0 By MS/MS By matching 1.5 0.5 1 1 1 1 39.079 39.121 3 0.00064478 9669 20211116_3428_TMUAki_TMT10x_P_F1 94.302 62.171 1467500 2005900 4362.5 2362900 3116800 2843700 1751900 1686900 1559500 1382100 1956400 1366300 1873100 133410 2392500 2953400 2841300 1842400 1764300 1609000 1362300 1874900 2 2 1 2 2 2 2 2 2 2 2 1467500 2005900 4362.5 2362900 3116800 2843700 1751900 1686900 1559500 1382100 1956400 1366300 1873100 133410 2392500 2953400 2841300 1842400 1764300 1609000 1362300 1874900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 59025000 55321000 3704300 2413 1552 2263 14106;14107 16992;16993 16992 2 DAAAVLVSR Unmodified 900.50288 0.50288033 2669 Q9BTW9;Q9BTW9-4;Q9BTW9-5 TBCD Tubulin-specific chaperone D yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 38.82 38.977 2 0.02999 10171 20211116_3442_TMUAki_TMT10x_S_F4 59.931 27.09 2364800 3831100 0 3998600 2330500 1857100 2494500 2152200 2289700 2106700 3033900 2201700 3575400 171370 4035300 2237200 2030600 2515300 2172000 2364700 2059400 2903600 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2364800 3831100 0 3998600 2330500 1857100 2494500 2152200 2289700 2106700 3033900 2201700 3575400 171370 4035300 2237200 2030600 2515300 2172000 2364700 2059400 2903600 2 2 0 2 2 2 2 2 2 2 2 125020000 0 125020000 2414 2669 2264 14108;14109 16994 16994 1 DAADKPR Unmodified 771.38752 0.38751622 1607 Q13185 CBX3 Chromobox protein homolog 3 yes yes 0 0 0 1 By MS/MS 3 0 1 1 25.866 25.566 3 0.065472 7364 20211116_3441_TMUAki_TMT10x_S_F3 49.097 24.465 186400 317180 3789.1 256040 195460 198030 220570 196250 155050 160350 212360 173590 295730 19112 264650 188280 205280 220390 198550 162640 158080 203080 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 186400 317180 3789.1 256040 195460 198030 220570 196250 155050 160350 212360 173590 295730 19112 264650 188280 205280 220390 198550 162640 158080 203080 1 1 1 1 1 1 1 1 1 1 1 2234900 0 2234900 2415 1607 2265 14110 16995 16995 1 DAAFATLVSDR Unmodified 1164.5775 0.57750184 2701 Q9BW27;Q9BW27-3;Q9BW27-2 NUP85 Nuclear pore complex protein Nup85 yes no 0 0 0 0 By MS/MS 4 0 1 1 55.389 55.372 2 2.4828E-05 17055 20211116_3442_TMUAki_TMT10x_S_F4 107.95 85.122 2838100 5147100 1638.6 5620300 3119900 2349900 2492400 3514500 3764700 3395400 4003700 2642500 4804500 240770 5651300 2975900 2621800 2600300 3510900 3782800 3321000 3854800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2838100 5147100 1638.6 5620300 3119900 2349900 2492400 3514500 3764700 3395400 4003700 2642500 4804500 240770 5651300 2975900 2621800 2600300 3510900 3782800 3321000 3854800 1 1 1 1 1 1 1 1 1 1 1 146980000 0 146980000 2416 2701 2266 14111 16996 16996 1 DAAFEALGTALK Unmodified 1205.6292 0.62920306 1672 Q14008;Q14008-2;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 70.14 70.073 2 3.041E-09 22091 20211116_3445_TMUAki_TMT10x_S_F6 156.58 124.82 4011900 7189100 6884.1 7210400 4317700 4385100 4555400 4526900 4456900 4505600 5328500 3735500 6708300 343310 7312100 4146400 4644700 4605300 4594900 4569400 4401300 5113200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4011900 7189100 6884.1 7210400 4317700 4385100 4555400 4526900 4456900 4505600 5328500 3735500 6708300 343310 7312100 4146400 4644700 4605300 4594900 4569400 4401300 5113200 1 1 1 1 1 1 1 1 1 1 1 483240000 134870000 348370000 2417 1672 2267 14112;14113;14114;14115 16997;16998;16999 16999 3 DAAIYLVTSLASK Unmodified 1350.7395 0.73948179 1234 P55060;P55060-3;P55060-4 CSE1L Exportin-2 yes no 0 0 0 0 By MS/MS By MS/MS 1.75 0.433 1 3 2 2 79.258 79.24 2;3 8.2495E-23 26160 20211116_3440_TMUAki_TMT10x_S_F2 212.89 172.54 19254000 29450000 193970 38671000 15202000 17763000 19288000 8589300 9364900 10976000 17238000 17928000 27514000 1720300 38487000 14691000 19179000 19044000 9267400 10241000 10622000 16385000 2 2 2 2 2 2 2 2 2 2 2 7649400 12320000 49878 16051000 6645800 9287200 6983500 3978300 4079200 4374700 6788000 7122700 11510000 666610 16010000 6383800 9759100 6976100 4324600 4373100 4256200 6464300 1 1 1 1 1 1 1 1 1 1 1 11604000 17130000 144100 22620000 8556100 8475400 12305000 4611100 5285700 6601700 10450000 10806000 16005000 1053700 22476000 8306900 9419800 12068000 4942800 5867700 6365500 9920600 1 1 1 1 1 1 1 1 1 1 1 3051700000 2014900000 1036800000 2418 1234 2268 14116;14117;14118;14119 17000;17001;17002 17001 3 DAALATALGDKK Unmodified 1172.6401 0.6401021 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 1 By MS/MS By MS/MS 5.83 0.898 3 1 2 3 3 49.015 49.362 3 3.6438E-12 13295 20211116_3444_TMUAki_TMT10x_S_F5 134.21 90.578 20570000 32154000 116590 34287000 43529000 39417000 24944000 24801000 25714000 24101000 27616000 19153000 30011000 2075800 34905000 41274000 39511000 26298000 25933000 26194000 23567000 26581000 6 6 5 6 6 6 6 6 6 6 6 17204000 26469000 102880 28240000 39935000 36528000 21322000 20642000 21594000 20098000 22877000 16019000 24705000 1780800 28809000 37826000 36344000 22610000 21773000 22002000 19651000 22029000 5 5 4 5 5 5 5 5 5 5 5 3366100 5685400 13717 6046800 3594600 2889000 3621900 4158800 4119800 4002800 4738300 3134300 5306400 295060 6096000 3448200 3166400 3687800 4159700 4191300 3915700 4551700 1 1 1 1 1 1 1 1 1 1 1 1936000000 1505600000 430390000 2419 748 2269 14120;14121;14122;14123;14124;14125 17003;17004;17005;17006;17007;17008;17009;17010 17008 8 DAALLEAAR Unmodified 928.49779 0.49779495 2766 Q9H078;Q9H078-3;Q9H078-2 CLPB Caseinolytic peptidase B protein homolog yes no 0 0 0 0 By MS/MS 3 0 1 1 42.196 42.25 2 0.010028 12878 20211116_3430_TMUAki_TMT10x_P_F3 69.915 33.409 926970 1456600 0 1642900 1900100 1805200 1097700 860520 887370 912970 1110000 862990 1359900 75740 1665300 1800800 1807800 1148900 924170 919840 889500 1063900 1 1 0 1 1 1 1 1 1 1 1 926970 1456600 0 1642900 1900100 1805200 1097700 860520 887370 912970 1110000 862990 1359900 75740 1665300 1800800 1807800 1148900 924170 919840 889500 1063900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25606000 25606000 0 2420 2766 2270 14126 17011 17011 1 DAANLLNDALAIR Unmodified 1368.7361 0.73612775 1541 Q07866;Q07866-4;Q07866-6;Q07866-7;Q07866-2;Q07866-8;Q07866-3;Q07866-5;Q07866-10;Q07866-9 KLC1 Kinesin light chain 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 76.007 75.999 2 6.7811E-15 24483 20211116_3445_TMUAki_TMT10x_S_F6 176.05 152.73 6450100 9789200 100320 11264000 6285800 9026300 7476000 5741500 6065000 6744200 7909900 6006500 9139900 625950 11353000 6063100 9259600 7477300 6033400 6297300 6545400 7573300 2 2 2 2 2 2 2 2 2 2 2 3156100 4824300 99341 5475900 2910500 5271900 3486300 2860700 3045900 3354600 3940800 2939400 4504000 350800 5537200 2811200 5329000 3492600 3045000 3149700 3256000 3773800 1 1 1 1 1 1 1 1 1 1 1 3294100 4964900 978.08 5787900 3375300 3754400 3989700 2880900 3019100 3389500 3969100 3067100 4635800 275150 5816100 3251900 3930600 3984700 2988400 3147600 3289400 3799400 1 1 1 1 1 1 1 1 1 1 1 443930000 207340000 236590000 2421 1541 2271 14127;14128;14129 17012;17013;17014 17014 3 DAASLESQLQDTQELLQEETR Unmodified 2403.1401 0.14014147 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS By MS/MS 1.76 0.546 5 11 1 10 7 48.008 47.908 2;3 8.7376E-102 27513 20211116_3439_TMUAki_TMT10x_S_F1 323.02 303.7 23377000 39210000 36776 35058000 23144000 33357000 27959000 23339000 21364000 21009000 26216000 21765000 36572000 946790 36033000 22297000 33862000 27904000 24166000 22195000 20614000 25139000 12 12 3 12 12 12 12 12 12 12 12 17368000 27637000 36776 24725000 14986000 27172000 20087000 15050000 15598000 16369000 18825000 16170000 25777000 812900 25466000 14484000 27258000 19969000 15953000 16179000 15932000 18059000 10 10 3 10 10 10 10 10 10 10 10 6009200 11573000 0 10333000 8157700 6185200 7872700 8289700 5765500 4640200 7391200 5594900 10795000 133900 10567000 7812800 6604200 7935300 8212900 6015300 4682200 7079700 2 2 0 2 2 2 2 2 2 2 2 14508000000 7666700000 6841000000 2422 935 2272 14130;14131;14132;14133;14134;14135;14136;14137;14138;14139;14140;14141;14142;14143;14144;14145;14146 17015;17016;17017;17018;17019;17020;17021;17022;17023;17024;17025;17026;17027;17028;17029 17026 15 DAATIMQPYFTSNGLVTK Unmodified 1955.9663 0.96626362 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.2 1.47 1 1 2 1 1 4 85.018 85.019 3 0.090516 30302 20211116_3446_TMUAki_TMT10x_S_F7 26.474 9.5353 2196800 3729300 9181.2 3373200 2720600 2811100 2756200 2388500 2183300 2595300 2707000 2045400 3478500 187430 3457900 2609400 2888900 2776100 2455900 2264800 2526200 2595200 6 6 2 6 6 6 6 6 6 6 6 417080 683150 0 611090 456770 789100 476710 443180 401230 460660 479270 388340 637180 35103 631170 438480 785130 480170 468570 414260 449190 459920 1 1 0 1 1 1 1 1 1 1 1 1779700 3046100 9181.2 2762100 2263800 2022000 2279500 1945300 1782100 2134700 2227800 1657000 2841300 152330 2826800 2170900 2103800 2295900 1987400 1850500 2077000 2135200 5 5 2 5 5 5 5 5 5 5 5 81829000 16739000 65090000 2423 1695 2273 14147;14148;14149;14150;14151 17030;17031;17032 17032 3 DAATIMQPYFTSNGLVTK Oxidation (M) 1971.9612 0.96117824 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 1 0 By MS/MS 7 0 1 1 63.621 64.077 3 0.00020194 21576 20211116_3446_TMUAki_TMT10x_S_F7 66.606 43.953 3357000 5455300 17389 5274000 3732900 3547700 3146800 4327300 3943600 4477300 4204500 3125800 5089700 299790 5367300 3565600 3738100 3247300 4364800 3986300 4366600 4047800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3357000 5455300 17389 5274000 3732900 3547700 3146800 4327300 3943600 4477300 4204500 3125800 5089700 299790 5367300 3565600 3738100 3247300 4364800 3986300 4366600 4047800 1 1 1 1 1 1 1 1 1 1 1 572440000 0 572440000 2424 1695 2273 14152 17033 17033 2275 1 DAATVTQMHFLTGQGR Oxidation (M) 1747.8312 0.83116712 1788 Q15334 LLGL1 Lethal(2) giant larvae protein homolog 1 yes yes 0 0 1 0 By MS/MS 6 0 1 1 36.137 36.125 3 0.00057182 8047 20211116_3434_TMUAki_TMT10x_P_F6 66.022 52.359 84232 129290 2151.8 163260 198810 187720 110470 118910 133230 88577 115130 78445 120760 10594 164520 188540 188180 117380 123460 133900 87759 111620 1 1 1 1 1 1 1 1 1 1 1 84232 129290 2151.8 163260 198810 187720 110470 118910 133230 88577 115130 78445 120760 10594 164520 188540 188180 117380 123460 133900 87759 111620 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7663100 7663100 0 2425 1788 2274 14153 17034 17034 2403 1 DACELIER Unmodified 1004.4597 0.45969489 2451 Q96EY4 TMA16 Translation machinery-associated protein 16 yes yes 0 0 0 0 By MS/MS 2 0 1 1 38.536 38.63 2 0.019057 9618 20211116_3440_TMUAki_TMT10x_S_F2 73.26 39.182 351340 537100 0 641960 358510 275070 306440 541050 508070 430740 537080 327070 501570 21352 642020 341940 308830 319800 533380 509080 425220 517200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 351340 537100 0 641960 358510 275070 306440 541050 508070 430740 537080 327070 501570 21352 642020 341940 308830 319800 533380 509080 425220 517200 1 1 0 1 1 1 1 1 1 1 1 11890000 0 11890000 2426 2451 2275 14154 17035 17035 1 DADIGVAEAERDAGIR Unmodified 1656.8067 0.80672651 1700 Q14254 FLOT2 Flotillin-2 yes yes 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 49.094 48.968 3 3.1535E-15 15651 20211116_3439_TMUAki_TMT10x_S_F1 152.37 126.39 9362600 16298000 224750 17464000 14603000 16794000 10859000 13988000 13590000 11993000 14489000 8719100 15212000 1059100 17724000 13922000 17087000 11295000 14304000 13738000 11795000 13949000 4 4 4 4 4 4 4 4 4 4 4 5357600 8821300 151280 9748700 10927000 13240000 7679500 7879600 7607300 6979900 8365400 4989600 8234700 663180 9932000 10405000 13152000 7957200 8255000 7769200 6854000 8046400 2 2 2 2 2 2 2 2 2 2 2 4005000 7476500 73468 7715600 3675800 3554900 3179600 6108800 5983000 5013200 6123800 3729600 6977300 395900 7792100 3516500 3935500 3338000 6049300 5969000 4941300 5903100 2 2 2 2 2 2 2 2 2 2 2 744660000 345040000 399630000 2427 1700 2276 14155;14156;14157 17036;17037;17038;17039;17040 17038 5 DADSITLFDVQQK Unmodified 1478.7253 0.72528829 1207 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 By MS/MS 4 0 1 1 66.535 66.623 3 0.016293 21193 20211116_3431_TMUAki_TMT10x_P_F4 56.956 34.758 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2428 1207 2277 14158 17041 17041 1 DADSSISVLEIHSQK Unmodified 1627.8053 0.80532952 2561 Q96T23;Q96T23-2;Q96T23-3 RSF1 Remodeling and spacing factor 1 yes no 0 0 0 0 By MS/MS 4 0 1 1 49.163 49.317 3 0.00015028 14516 20211116_3442_TMUAki_TMT10x_S_F4 78.508 64.478 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2429 2561 2278 14159 17042 17042 1 DAEDAMDAMDGAVLDGR 2 Oxidation (M) 1782.7036 0.70364292 1479 Q01130;Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 yes no 0 0 2 0 By MS/MS By MS/MS 1.3 0.458 7 3 4 6 40.317 40.246 2;3 1.5421E-05 11912 20211116_3439_TMUAki_TMT10x_S_F1 90.706 71.128 2557500 4179200 32152 5471000 4104400 3781500 2721800 3862600 4643000 3263900 4131100 2381400 3904500 239200 5464800 3901100 3958400 2892600 3905300 4621300 3212400 4001000 8 8 5 8 8 8 8 8 8 8 8 1078600 1732300 7939.8 2095200 2884100 2730900 1618700 1668500 1739300 1417100 1583500 1004200 1617700 104500 2121300 2732900 2719000 1711800 1742500 1758700 1394400 1532400 3 3 2 3 3 3 3 3 3 3 3 1478900 2446900 24213 3375800 1220300 1050600 1103000 2194100 2903700 1846800 2547600 1377100 2286700 134700 3343500 1168200 1239400 1180700 2162700 2862600 1818000 2468600 5 5 3 5 5 5 5 5 5 5 5 1905700000 1335800000 569920000 2430 1479 2279 14160;14161;14162;14163;14164;14165;14166;14167;14168;14169 17043;17044;17045;17046;17047;17048;17049;17050;17051;17052 17047 2004;2005 10 DAEDAMDAMDGAVLDGR Oxidation (M) 1766.7087 0.7087283 1479 Q01130;Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 yes no 0 0 1 0 By MS/MS By MS/MS 1 0 10 5 5 53.008 52.879 2;3 8.1269E-12 15845 20211116_3428_TMUAki_TMT10x_P_F1 139 122.88 21802000 36042000 260240 39458000 30425000 34264000 26550000 27958000 25063000 25047000 30200000 20301000 33644000 2092800 39935000 29086000 35084000 27087000 28657000 25744000 24582000 28974000 11 11 7 11 11 11 11 11 11 11 11 11596000 17813000 104120 19785000 19304000 24485000 16633000 13445000 11895000 11694000 15101000 10797000 16629000 1110000 20115000 18445000 24406000 16864000 14175000 12423000 11493000 14468000 6 6 3 6 6 6 6 6 6 6 6 10206000 18229000 156120 19673000 11121000 9778300 9917100 14513000 13167000 13353000 15099000 9503800 17015000 982790 19820000 10641000 10678000 10223000 14482000 13322000 13089000 14506000 5 5 4 5 5 5 5 5 5 5 5 5167000000 3714500000 1452600000 2431 1479 2279 14170;14171;14172;14173;14174;14175;14176;14177;14178;14179 17053;17054;17055;17056;17057;17058;17059;17060;17061;17062;17063;17064 17056 2004;2005 12 DAEDAMDAMDGAVLDGR Unmodified 1750.7138 0.71381368 1479 Q01130;Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 yes no 0 0 0 0 By MS/MS By MS/MS 1.2 0.4 4 1 2 3 68.712 68.618 2;3 2.5238E-93 21616 20211116_3428_TMUAki_TMT10x_P_F1 342.43 329 29628000 44921000 0 50793000 30327000 26927000 34462000 11704000 9417000 13312000 27713000 27584000 41938000 1928600 51046000 29158000 28562000 33965000 12717000 11325000 12935000 26168000 6 6 0 6 6 6 6 6 6 6 6 18598000 26373000 0 31619000 18715000 19484000 23900000 6139500 4876900 7310600 16665000 17315000 24629000 1301500 31705000 18059000 20298000 23383000 6950700 6212200 7091700 15711000 3 3 0 3 3 3 3 3 3 3 3 11030000 18548000 0 19174000 11612000 7443300 10562000 5564900 4540100 6001100 11048000 10269000 17309000 627060 19341000 11099000 8264100 10582000 5765900 5113200 5843000 10457000 3 3 0 3 3 3 3 3 3 3 3 6143300000 3539700000 2603600000 2432 1479 2279 14180;14181;14182;14183;14184 17065;17066;17067;17068;17069;17070;17071 17066 7 DAEGILEDLQSYR Unmodified 1507.7155 0.71545188 2958 Q9NUQ9 FAM49B Protein FAM49B yes yes 0 0 0 0 By MS/MS By MS/MS 2.08 0.954 4 4 3 1 6 6 75.069 74.97 2;3 2.6338E-36 24146 20211116_3428_TMUAki_TMT10x_P_F1 272.94 245.32 39306000 66331000 153010 62281000 45474000 60262000 48469000 40310000 40667000 43845000 51365000 36596000 61878000 3099200 63793000 43662000 61067000 48766000 42097000 42093000 42676000 49219000 14 14 5 14 14 14 14 14 14 14 14 18825000 29892000 92190 28438000 18337000 35404000 22681000 19264000 19441000 20821000 23814000 17527000 27887000 1454100 29218000 17686000 35275000 22679000 20447000 20075000 20270000 22837000 6 6 2 6 6 6 6 6 6 6 6 20481000 36438000 60816 33844000 27137000 24857000 25788000 21046000 21225000 23024000 27551000 19068000 33991000 1645100 34575000 25977000 25792000 26087000 21650000 22017000 22405000 26382000 8 8 3 8 8 8 8 8 8 8 8 5309800000 2753200000 2556500000 2433 2958 2280 14185;14186;14187;14188;14189;14190;14191;14192;14193;14194;14195;14196 17072;17073;17074;17075;17076;17077;17078;17079;17080;17081;17082;17083;17084;17085;17086 17073 15 DAELQMKQEAIR Unmodified 1430.7188 0.71876312 3406 yes yes 0 0 0 1 By MS/MS 7 0 1 1 43.923 44.448 4 0.10309 13588 20211116_3446_TMUAki_TMT10x_S_F7 36.847 4.8386 + 951430 1833300 7929.5 1710600 812100 650180 510680 2019600 1637300 1496200 1755600 885930 1710200 84319 1737900 771580 758540 568640 1968700 1620600 1482800 1689900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 951430 1833300 7929.5 1710600 812100 650180 510680 2019600 1637300 1496200 1755600 885930 1710200 84319 1737900 771580 758540 568640 1968700 1620600 1482800 1689900 1 1 1 1 1 1 1 1 1 1 1 161850000 0 161850000 2434 3406 2281 14197 17087 17087 1 DAENHEAQLK Unmodified 1153.5364 0.53636531 3226 Q9Y266 NUDC Nuclear migration protein nudC yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 29.278 29.025 3 0.000204 8704 20211116_3441_TMUAki_TMT10x_S_F3 104.82 75.351 789130 1218000 34946 1204000 1043400 1184300 927940 535580 633250 651110 910070 735020 1136500 101550 1229000 999690 1193100 938170 580730 666940 631140 869350 2 2 2 2 2 2 2 2 2 2 2 545780 754860 7354.8 760820 641820 792320 486650 304830 347630 395190 553820 508230 704380 53448 776210 611950 794260 497440 337230 367060 382240 527870 1 1 1 1 1 1 1 1 1 1 1 243350 463160 27591 443200 401600 391980 441290 230750 285620 255920 356260 226790 432100 48106 452780 387740 398860 440720 243500 299890 248910 341480 1 1 1 1 1 1 1 1 1 1 1 22567000 9196500 13370000 2435 3226 2282 14198;14199 17088;17089 17089 2 DAEPRPPHGELQYLGQIQHILR Unmodified 2566.3405 0.34045346 493 P04818;P04818-2;P04818-3 TYMS Thymidylate synthase yes no 0 0 0 1 By MS/MS By MS/MS 6.7 0.9 1 3 4 2 5 5 55.33 55.609 3;4;5 4.2421E-54 18120 20211116_3446_TMUAki_TMT10x_S_F7 207.67 183.38 52378000 88282000 354590 84756000 59448000 76759000 55811000 59640000 56980000 51691000 62745000 48767000 82363000 3904100 86594000 56899000 78306000 56838000 61264000 58120000 50812000 60350000 16 16 8 16 16 16 16 16 16 16 16 23038000 35449000 99941 34857000 28299000 48598000 26893000 26625000 25141000 22920000 24703000 21449000 33076000 1880900 35807000 27093000 48167000 27298000 28068000 25638000 22538000 23843000 7 7 4 7 7 7 7 7 7 7 7 29340000 52833000 254650 49899000 31149000 28161000 28919000 33015000 31838000 28771000 38042000 27318000 49288000 2023100 50787000 29807000 30138000 29540000 33196000 32482000 28274000 36506000 9 9 4 9 9 9 9 9 9 9 9 18886000000 9938700000 8947800000 2436 493 2283 14200;14201;14202;14203;14204;14205;14206;14207;14208;14209 17090;17091;17092;17093;17094;17095;17096;17097;17098;17099;17100;17101;17102;17103;17104;17105;17106 17105 17 DAESIHQYLLQR Unmodified 1471.7419 0.74194141 1246 P55786;P55786-2 NPEPPS Puromycin-sensitive aminopeptidase yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 46.079 46.243 3 2.1901E-12 12042 20211116_3444_TMUAki_TMT10x_S_F5 138.24 99.214 3399300 5127500 8193.3 5569600 5281300 4823300 3373300 3643600 3619300 3373300 4277000 3165100 4786200 315820 5639500 5016500 4933200 3529100 3756000 3694600 3305700 4105500 2 2 2 2 2 2 2 2 2 2 2 1876300 2487900 1449.9 2960000 3421300 3669700 2083700 1941200 2240400 1783500 2200300 1747000 2323200 178550 2997000 3246900 3655800 2188300 2056100 2270900 1748400 2123800 1 1 1 1 1 1 1 1 1 1 1 1523000 2639600 6743.5 2609600 1860000 1153700 1289600 1702400 1378900 1589800 2076700 1418100 2462900 137270 2642500 1769600 1277400 1340700 1699800 1423700 1557300 1981700 1 1 1 1 1 1 1 1 1 1 1 227870000 170880000 56986000 2437 1246 2284 14210;14211;14212 17107;17108;17109 17109 3 DAFADAVQR Unmodified 991.47231 0.47230849 2380 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 37.276 37.174 2 8.0071E-05 9523 20211116_3430_TMUAki_TMT10x_P_F3 141.52 48.377 2838800 4710700 33934 5752600 5946500 4351900 3001900 3736500 4608900 3175300 4608500 2643400 4399500 306350 5774100 5629500 4506000 3248600 3813300 4618400 3124300 4445700 6 6 3 6 6 6 6 6 6 6 6 1325400 2117900 27780 2564300 4450000 3145300 1626400 1689100 2125700 1420700 2107500 1234200 1977900 175450 2593200 4197300 3135700 1812800 1782900 2140100 1398600 2033600 4 4 2 4 4 4 4 4 4 4 4 1513400 2592900 6153.8 3188300 1496600 1206500 1375500 2047300 2483100 1754600 2501000 1409200 2421600 130900 3180900 1432300 1370300 1435800 2030400 2478300 1725700 2412100 2 2 1 2 2 2 2 2 2 2 2 242440000 108220000 134220000 2438 2380 2285 14213;14214;14215;14216 17110;17111;17112;17113;17114;17115 17112 6 DAFDRNPELQNLLLDDFFK Unmodified 2309.1328 0.13281167 1170 P52209;P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 1 By MS/MS By MS/MS 3.5 1.12 1 1 1 1 3 1 80.01 79.983 3 2.4218E-33 27740 20211116_3429_TMUAki_TMT10x_P_F2 199.15 177.29 19927000 29163000 333820 34886000 14887000 25821000 16283000 10958000 10415000 14594000 19751000 18557000 27233000 1892600 35049000 14330000 26530000 16262000 12001000 11184000 14104000 18764000 3 3 3 3 3 3 3 3 3 3 3 19927000 29163000 333820 34886000 14887000 25821000 16283000 10958000 10415000 14594000 19751000 18557000 27233000 1892600 35049000 14330000 26530000 16262000 12001000 11184000 14104000 18764000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3299200000 3299200000 0 2439 1170 2286 14217;14218;14219;14220 17116;17117;17118;17119 17116 4 DAFLGSFLYEYSR Unmodified 1566.7355 0.73545904 38 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS 6.69 0.991 2 3 5 3 8 5 79.035 79.05 2;3 5.1889E-23 27864 20211116_3446_TMUAki_TMT10x_S_F7 215.08 179.63 + 56100000 88876000 101550 80445000 79143000 98103000 74468000 133530000 154010000 126200000 90287000 52231000 82899000 3687800 82927000 75740000 99647000 78243000 133750000 150930000 123550000 89069000 11 11 3 11 11 11 11 11 11 11 11 31003000 48167000 36467 43217000 44378000 71629000 44786000 68672000 78417000 64738000 48649000 28865000 44926000 1882900 44863000 42547000 71152000 46449000 69853000 77248000 63389000 47851000 6 6 1 6 6 6 6 6 6 6 6 25097000 40710000 65079 37228000 34764000 26473000 29681000 64855000 75589000 61457000 41639000 23366000 37973000 1804900 38064000 33192000 28495000 31794000 63901000 73685000 60162000 41218000 5 5 2 5 5 5 5 5 5 5 5 12722000000 6369700000 6352600000 2440 38 2287 14221;14222;14223;14224;14225;14226;14227;14228;14229;14230;14231;14232;14233 17120;17121;17122;17123;17124;17125;17126;17127;17128;17129;17130;17131;17132 17129 13 DAFQNAYLELGGLGER Unmodified 1751.8479 0.84786304 497 P05023;P05023-3;P05023-4;P05023-2 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes no 0 0 0 0 By MS/MS By MS/MS 4.38 1 3 4 4 2 6 7 76.201 76.172 2;3 5.0156E-53 25100 20211116_3431_TMUAki_TMT10x_P_F4 274.64 240.77 33391000 52802000 195900 53120000 34523000 40611000 37172000 26036000 26504000 28377000 36628000 31089000 49271000 2627200 53981000 33159000 41816000 37237000 27277000 27789000 27618000 35020000 13 13 3 13 13 13 13 13 13 13 13 15606000 24478000 33700 24177000 13179000 23267000 14858000 12537000 12645000 13723000 17049000 14529000 22840000 1136100 24672000 12671000 23518000 14914000 13324000 13117000 13354000 16310000 6 6 1 6 6 6 6 6 6 6 6 17786000 28324000 162200 28943000 21344000 17344000 22315000 13498000 13859000 14654000 19579000 16560000 26432000 1491200 29310000 20488000 18298000 22322000 13953000 14672000 14264000 18710000 7 7 2 7 7 7 7 7 7 7 7 4393700000 2215000000 2178700000 2441 497 2288 14234;14235;14236;14237;14238;14239;14240;14241;14242;14243;14244;14245;14246 17133;17134;17135;17136;17137;17138;17139;17140;17141;17142;17143;17144;17145;17146;17147 17136 15 DAFVAIVQSVK Unmodified 1175.655 0.65502388 548 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 3 2 1 74.812 74.756 2;3 1.7925E-15 23686 20211116_3447_TMUAki_TMT10x_S_F8 199.09 102.14 13029000 21637000 49796 20531000 12504000 18065000 15740000 13945000 15736000 14896000 16351000 12132000 20186000 1085600 20986000 12072000 18463000 15797000 14415000 16031000 14509000 15754000 3 3 1 3 3 3 3 3 3 3 3 4329600 7081900 49796 6760600 4615500 7125100 5148300 3697200 4143900 4289700 4817800 4031700 6607000 409370 6925100 4441900 7159100 5163200 3949800 4283600 4165100 4626700 1 1 1 1 1 1 1 1 1 1 1 8699700 14555000 0 13770000 7888700 10940000 10592000 10248000 11592000 10606000 11533000 8100000 13579000 676240 14061000 7629800 11304000 10634000 10465000 11747000 10344000 11127000 2 2 0 2 2 2 2 2 2 2 2 1382100000 764850000 617220000 2442 548 2289 14247;14248;14249 17148;17149;17150;17151 17150 4 DAGAGLLAAAMIAVVPGYISR Unmodified 2015.0874 0.087381804 1061 P46977;P46977-2 STT3A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A yes no 0 0 0 0 By MS/MS By matching 4 0 2 1 1 82.303 82.302 3 7.5038E-05 27659 20211116_3431_TMUAki_TMT10x_P_F4 65.454 49.315 633060 955720 6120.8 938570 649530 944020 652550 557810 600310 617990 767000 589490 891720 58420 958790 623240 952690 660140 588430 618920 601080 734740 1 1 1 1 1 1 1 1 1 1 1 633060 955720 6120.8 938570 649530 944020 652550 557810 600310 617990 767000 589490 891720 58420 958790 623240 952690 660140 588430 618920 601080 734740 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 263580000 126210000 137370000 2443 1061 2290 14250;14251 17152 17152 1 DAGEGGLSLAIEGPSK Unmodified 1499.7468 0.74675201 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 58.933 58.808 3 6.0867E-08 18493 20211116_3442_TMUAki_TMT10x_S_F4 117 101.45 11729000 19445000 11749 20537000 15085000 15485000 11605000 17739000 15751000 14261000 16015000 10921000 18149000 1002400 20798000 14375000 16138000 12082000 17818000 15852000 14071000 15441000 4 4 2 4 4 4 4 4 4 4 4 3730400 5427700 0 6393200 5107400 7919900 4341900 4382800 4094500 3958200 4401400 3473200 5068200 301780 6476800 4876200 7894600 4436600 4621900 4187100 3883200 4236400 1 1 0 1 1 1 1 1 1 1 1 7999000 14018000 11749 14143000 9977200 7565300 7263100 13356000 11656000 10303000 11614000 7448000 13081000 700650 14321000 9499000 8242900 7645200 13196000 11664000 10188000 11205000 3 3 2 3 3 3 3 3 3 3 3 836880000 376640000 460240000 2444 755 2291 14252;14253;14254 17153;17154;17155;17156 17156 4 DAGEGLLAVQITDPEGKPK Unmodified 1937.0106 0.010571271 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 1 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 61.371 61.245 3 2.7891E-12 19457 20211116_3442_TMUAki_TMT10x_S_F4 130.11 110.27 2187600 3946800 40484 3780400 2316300 2359100 2313100 2628300 2680100 2644600 2923300 2037200 3682100 220900 3847100 2223400 2497000 2357800 2659200 2719100 2582100 2812500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2187600 3946800 40484 3780400 2316300 2359100 2313100 2628300 2680100 2644600 2923300 2037200 3682100 220900 3847100 2223400 2497000 2357800 2659200 2719100 2582100 2812500 1 1 1 1 1 1 1 1 1 1 1 353560000 0 353560000 2445 755 2292 14255;14256;14257 17157;17158;17159 17159 3 DAGHPLYPFNDPY Unmodified 1504.6623 0.6622941 669 P14550 AKR1A1 Alcohol dehydrogenase [NADP(+)] yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 61.856 61.777 2 0.0046912 19219 20211116_3431_TMUAki_TMT10x_P_F4 66.299 59.609 26379000 49000000 92841 43358000 32366000 39113000 27234000 30110000 27834000 27706000 34254000 24561000 45701000 2071000 44567000 30907000 39905000 27911000 30996000 28518000 27158000 32845000 9 9 5 9 9 9 9 9 9 9 9 8904700 15901000 31334 14587000 10656000 20323000 11365000 11097000 10152000 9956700 11088000 8291400 14832000 568160 15059000 10237000 20143000 11453000 11714000 10414000 9771200 10667000 4 4 2 4 4 4 4 4 4 4 4 17474000 33100000 61507 28771000 21711000 18789000 15869000 19014000 17682000 17750000 23166000 16270000 30869000 1502800 29508000 20670000 19762000 16458000 19283000 18103000 17387000 22178000 5 5 3 5 5 5 5 5 5 5 5 2390100000 1344600000 1045500000 2446 669 2293 14258;14259;14260;14261;14262;14263 17160;17161;17162;17163;17164;17165;17166;17167 17162 8 DAGIEPGPDTYLALLNAYAEK Unmodified 2220.095 0.095029182 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5.22 1.87 1 1 1 2 1 2 1 6 3 80.676 80.671 3 2.6683E-19 27209 20211116_3433_TMUAki_TMT10x_P_F5 146.1 132.67 15457000 23284000 112680 26927000 10686000 14973000 13114000 8765800 10174000 10471000 14945000 14392000 21740000 1235000 27034000 10308000 15852000 13084000 9276800 10648000 10156000 14269000 6 6 3 6 6 6 6 6 6 6 6 13684000 20368000 102780 23870000 9027900 13218000 10754000 7708500 8872300 9087800 13040000 12741000 19019000 1080400 23945000 8700500 13999000 10760000 8156900 9256200 8818800 12450000 5 5 2 5 5 5 5 5 5 5 5 1773400 2916000 9908.4 3056300 1658000 1755100 2359700 1057300 1301400 1383300 1905000 1651300 2721500 154640 3088600 1608000 1852600 2324100 1120000 1391700 1337500 1819000 1 1 1 1 1 1 1 1 1 1 1 4765000000 3543600000 1221400000 2447 1018 2294 14264;14265;14266;14267;14268;14269;14270;14271;14272 17168;17169;17170;17171;17172;17173;17174 17170 7 DAGIEPGPDTYLALLNAYAEKGDIDHVK Unmodified 2984.4767 0.47673175 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 1 By MS/MS 6 0.816 1 1 1 3 78.368 78.382 4 9.8174E-06 27607 20211116_3446_TMUAki_TMT10x_S_F7 68.309 56.785 8938400 14997000 950.95 13463000 11257000 10641000 12902000 7455000 7528700 8020700 9461000 8321900 13988000 695730 13800000 10830000 10943000 12834000 7757400 7962900 7810100 9066900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8938400 14997000 950.95 13463000 11257000 10641000 12902000 7455000 7528700 8020700 9461000 8321900 13988000 695730 13800000 10830000 10943000 12834000 7757400 7962900 7810100 9066900 2 2 1 2 2 2 2 2 2 2 2 2972000000 0 2972000000 2448 1018 2295 14273;14274;14275 17175;17176 17176 2 DAGLHCLELGHTGEAGPHAMVR Oxidation (M) 2343.0848 0.084832397 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 1 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 34.284 34.335 5 1.1654E-26 8107 20211116_3431_TMUAki_TMT10x_P_F4 166.28 152.85 1852600 2721600 7810 2713400 3267800 2845900 2022300 1787600 1787500 1536000 2200300 1725000 2539500 170890 2770600 3101900 2867300 2109200 1863400 1843400 1510500 2109800 3 3 1 3 3 3 3 3 3 3 3 1700900 2442700 0 2397200 3130700 2709900 1885600 1625400 1586100 1372500 1981200 1583600 2279100 151230 2453400 2969900 2717000 1968500 1699700 1640700 1350900 1899000 2 2 0 2 2 2 2 2 2 2 2 151780 278930 7810 316180 137110 136030 136740 162190 201320 163500 219070 141380 260410 19657 317230 131930 150280 140720 163630 202610 159630 210780 1 1 1 1 1 1 1 1 1 1 1 1020000000 988570000 31429000 2449 157 2296 14276;14277;14278 17177;17178;17179 17177 121 3 DAGLHCLELGHTGEAGPHAMVR Unmodified 2327.0899 0.089917775 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 37.658 37.714 5 1.6934E-26 8597 20211116_3444_TMUAki_TMT10x_S_F5 164.35 137.57 2499500 3873900 91892 4353700 4763600 4633100 3262200 2664700 2823700 2306700 3481700 2327900 3616600 324570 4411800 4535400 4658400 3373900 2798000 2915200 2267600 3338300 3 3 3 3 3 3 3 3 3 3 3 2076800 3146700 56468 3477300 4390100 4274700 2876300 2189000 2394900 1890300 2881100 1934200 2937400 257210 3535900 4174800 4258700 2981800 2321900 2474700 1858500 2764200 2 2 2 2 2 2 2 2 2 2 2 422630 727230 35424 876490 373490 358440 385890 475750 428820 416300 600580 393780 679140 67365 875880 360580 399750 392100 476010 440470 409030 574040 1 1 1 1 1 1 1 1 1 1 1 518170000 445110000 73068000 2450 157 2296 14279;14280;14281 17180;17181;17182 17182 3 DAGMQLQGYR Oxidation (M) 1153.5186 0.51860675 471 P00505;P00505-2 GOT2 Aspartate aminotransferase, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 32.608 32.558 2 0.0039449 10055 20211116_3441_TMUAki_TMT10x_S_F3 81.163 70.094 796130 1228500 0 1743400 1986500 1186200 864510 805190 972330 737400 1168400 741160 1148200 67217 1733900 1875500 1234300 938910 835870 991420 722980 1121100 3 3 0 3 3 3 3 3 3 3 3 445800 649280 0 975490 1612400 958460 537750 465680 568870 411450 627350 415030 607070 46219 971860 1518600 966390 602620 496720 579440 404080 603370 1 1 0 1 1 1 1 1 1 1 1 350330 579180 0 767910 374050 227780 326760 339510 403460 325950 541100 326120 541140 20998 761990 356930 267880 336290 339150 411980 318900 517720 2 2 0 2 2 2 2 2 2 2 2 73809000 41571000 32239000 2451 471 2297 14282;14283;14284 17183;17184 17184 361 2 DAGMQLQGYR Unmodified 1137.5237 0.52369213 471 P00505;P00505-2 GOT2 Aspartate aminotransferase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 37.137 37.269 2 1.8602E-07 9800 20211116_3431_TMUAki_TMT10x_P_F4 120.31 90.139 464750 843900 1450.3 809850 546510 386040 597940 296030 304140 345540 616760 432740 787320 41028 822250 525400 417390 594730 307010 333360 335440 585280 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 464750 843900 1450.3 809850 546510 386040 597940 296030 304140 345540 616760 432740 787320 41028 822250 525400 417390 594730 307010 333360 335440 585280 1 1 1 1 1 1 1 1 1 1 1 24332000 0 24332000 2452 471 2297 14285;14286 17185;17186 17185 2 DAGPLLISLK Unmodified 1025.6121 0.61209643 883 P31146 CORO1A Coronin-1A yes yes 0 0 0 0 By MS/MS 7 0 1 1 67.875 68.405 2 8.2826E-08 22868 20211116_3435_TMUAki_TMT10x_P_F7 123.75 54.902 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2453 883 2298 14287 17187 17187 1 DAGQISGLNVLR Unmodified 1241.6728 0.67279921 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5.4 0.917 2 3 4 1 4 6 53.187 53.316 2;3 4.4538E-17 15136 20211116_3445_TMUAki_TMT10x_S_F6 215.79 143.75 48883000 83252000 690230 91802000 88968000 91383000 53955000 75174000 94695000 64190000 69231000 45516000 77715000 4832000 93043000 84457000 92106000 57691000 76921000 93644000 63144000 67121000 9 9 7 9 8 8 8 8 9 8 8 28871000 48677000 186130 49291000 74295000 77014000 41235000 45742000 50394000 38390000 41761000 26881000 45423000 3018800 50656000 70405000 76044000 43838000 47865000 50560000 37796000 40552000 4 4 3 4 4 4 4 4 4 4 4 20012000 34575000 504100 42510000 14674000 14369000 12721000 29432000 44302000 25800000 27470000 18635000 32292000 1813200 42386000 14051000 16061000 13853000 29056000 43084000 25348000 26569000 5 5 4 5 4 4 4 4 5 4 4 11871000000 5873000000 5997600000 2454 972 2299 14288;14289;14290;14291;14292;14293;14294;14295;14296;14297 17188;17189;17190;17191;17192;17193;17194;17195;17196;17197;17198 17195 11 DAGTIAGLNVLR Unmodified 1198.667 0.66698555 615 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 By MS/MS By MS/MS 6.3 1.2 2 3 4 8 25 2 24 20 38.566 38.661 2;3 1.1431E-30 19245 20211116_3446_TMUAki_TMT10x_S_F7 270.06 231.97 432940000 758770000 1824900 764060000 580100000 701720000 445510000 595610000 614590000 531240000 606320000 403080000 708040000 27804000 778160000 552570000 716330000 464170000 609000000 617550000 521490000 585150000 41 41 21 41 41 41 41 41 41 41 41 210540000 338340000 416290 363810000 329520000 454160000 252230000 290470000 292140000 256520000 270600000 196010000 315800000 10371000 370700000 313840000 453420000 261120000 302570000 294690000 251930000 261700000 21 21 10 21 21 21 21 21 21 21 21 222400000 420430000 1408600 400250000 250580000 247560000 193280000 305140000 322450000 274720000 335720000 207070000 392230000 17433000 407460000 238740000 262910000 203050000 306430000 322860000 269560000 323450000 20 20 11 20 20 20 20 20 20 20 20 69431000000 35539000000 33892000000 2455 615 2300 14298;14299;14300;14301;14302;14303;14304;14305;14306;14307;14308;14309;14310;14311;14312;14313;14314;14315;14316;14317;14318;14319;14320;14321;14322;14323;14324;14325;14326;14327;14328;14329;14330;14331;14332;14333;14334;14335;14336;14337;14338;14339;14340;14341 17199;17200;17201;17202;17203;17204;17205;17206;17207;17208;17209;17210;17211;17212;17213;17214;17215;17216;17217;17218;17219;17220;17221;17222;17223;17224;17225;17226;17227;17228;17229;17230;17231;17232;17233;17234;17235;17236;17237;17238;17239;17240;17241;17242;17243 17239 45 DAGTIAGLNVMR Oxidation (M) 1232.6183 0.6183208 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 1 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 43.851 43.943 2 0.0001282 12322 20211116_3442_TMUAki_TMT10x_S_F4 88.181 68.704 9007400 13141000 54130 18792000 16524000 16031000 9410500 12899000 15094000 11351000 11804000 8386500 12283000 822490 18730000 15663000 16432000 10093000 13226000 14990000 11150000 11489000 5 5 2 5 5 5 5 5 5 5 5 5265500 7593900 43542 10767000 13459000 13235000 6795100 7526200 8767900 6502600 6769800 4902400 7097700 518920 10797000 12735000 13202000 7302100 7909600 8762600 6392900 6592400 3 3 1 3 3 3 3 3 3 3 3 3741900 5546900 10588 8024900 3064900 2796700 2615400 5372400 6325800 4848200 5034100 3484100 5185100 303570 7933500 2927700 3229500 2791300 5316600 6227200 4756600 4896200 2 2 1 2 2 2 2 2 2 2 2 2172200000 1364800000 807410000 2456 614 2301 14342;14343;14344;14345;14346 17244;17245;17246;17247;17248;17249 17247 612 6 DAGTIAGLNVMR Unmodified 1216.6234 0.62340617 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 53.437 53.546 2 1.8022E-30 15254 20211116_3445_TMUAki_TMT10x_S_F6 266.03 218.18 8503300 14328000 211670 17251000 12753000 11209000 9578500 7339800 6190800 7122900 10725000 7919000 13380000 961770 17302000 12161000 11705000 9777100 7651400 6607200 6965600 10206000 2 2 2 2 2 2 2 2 2 2 2 4036000 6400700 130640 7794100 8286800 8012400 5932200 3867100 3293500 3593200 5263900 3758900 5977700 515900 7856100 7894500 8055900 6058700 4132800 3535900 3520600 5016900 1 1 1 1 1 1 1 1 1 1 1 4467300 7927100 81031 9457100 4466400 3196800 3646300 3472700 2897300 3529800 5461000 4160100 7402600 445870 9446100 4266900 3649000 3718300 3518600 3071300 3445000 5188700 1 1 1 1 1 1 1 1 1 1 1 1126700000 620210000 506530000 2457 614 2301 14347;14348;14349 17250;17251;17252 17252 3 DAGVIAGLNVLR Unmodified 1196.6877 0.68772099 596 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B no no 0 0 0 0 By MS/MS By MS/MS 5.86 1.77 1 1 3 3 4 2 8 6 64.527 64.746 2;3 1.404E-16 19466 20211116_3434_TMUAki_TMT10x_P_F6 209.39 168.4 96557000 162180000 1360000 166240000 132320000 172660000 120970000 142180000 130740000 135300000 135880000 89913000 151350000 9565600 169400000 126660000 174820000 123600000 145890000 132760000 132420000 130920000 11 11 8 11 11 11 11 11 11 11 11 46535000 74421000 774780 77821000 66601000 108550000 62718000 67311000 62976000 65459000 63704000 43334000 69455000 4747700 79610000 63802000 107760000 63829000 70463000 64082000 64007000 61430000 5 5 4 5 5 5 5 5 5 5 5 50022000 87761000 585230 88415000 65722000 64117000 58248000 74873000 67767000 69838000 72173000 46579000 81893000 4817900 89788000 62858000 67059000 59769000 75432000 68681000 68414000 69486000 6 6 4 6 6 6 6 6 6 6 6 19352000000 9411500000 9940200000 2458 596 2302 14350;14351;14352;14353;14354;14355;14356;14357;14358;14359;14360;14361;14362;14363 17253;17254;17255;17256;17257;17258;17259;17260;17261;17262;17263;17264;17265;17266;17267;17268 17255 16 DAGYEFDICFTSVQK Unmodified 1778.7822 0.78215124 722 P18669 PGAM1 Phosphoglycerate mutase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.8 0.748 2 2 1 4 1 74.594 74.471 3 1.3901E-06 24368 20211116_3431_TMUAki_TMT10x_P_F4 104.17 92.554 36692000 63985000 813620 61361000 40299000 54128000 43164000 33236000 30494000 35187000 45175000 34170000 59695000 3850800 62676000 38762000 55119000 43241000 34905000 32098000 34285000 43125000 8 8 8 8 8 8 8 8 8 8 8 20158000 33430000 356310 31658000 20936000 36536000 23300000 18202000 17100000 18898000 23402000 18772000 31187000 2014200 32494000 20155000 36507000 23319000 19453000 17892000 18428000 22380000 4 4 4 4 4 4 4 4 4 4 4 16534000 30555000 457300 29704000 19364000 17592000 19865000 15034000 13394000 16289000 21774000 15398000 28508000 1836600 30182000 18607000 18611000 19923000 15452000 14206000 15857000 20745000 4 4 4 4 4 4 4 4 4 4 4 1204100000 1004600000 199450000 2459 722 2303 14364;14365;14366;14367;14368 17269;17270;17271;17272;17273;17274;17275;17276;17277 17273 9 DAGYEFDICFTSVQKR Unmodified 1934.8833 0.88326227 722 P18669 PGAM1 Phosphoglycerate mutase 1 yes yes 0 0 0 1 By MS/MS By MS/MS 5.5 1.12 2 2 2 2 4 4 62.479 62.65 3 2.1267E-47 18993 20211116_3445_TMUAki_TMT10x_S_F6 254.2 239.28 97030000 166080000 940620 136110000 104420000 156000000 112590000 118480000 114180000 121880000 121070000 90350000 154860000 8899900 141270000 100380000 156850000 113830000 122460000 116330000 118890000 116580000 17 17 14 17 17 17 17 17 17 17 17 53475000 88415000 408240 72390000 53508000 107390000 61246000 64158000 62733000 65376000 64431000 49793000 82440000 4714300 75505000 51519000 106270000 61766000 67450000 63816000 63799000 62102000 9 9 7 9 9 9 9 9 9 9 9 43554000 77670000 532380 63716000 50915000 48610000 51347000 54324000 51443000 56505000 56644000 40557000 72422000 4185500 65761000 48861000 50581000 52064000 55010000 52515000 55095000 54481000 8 8 7 8 8 8 8 8 8 8 8 12420000000 5713100000 6706700000 2460 722 2304 14369;14370;14371;14372;14373;14374;14375;14376 17278;17279;17280;17281;17282;17283;17284;17285;17286;17287;17288;17289;17290;17291;17292;17293;17294 17291 17 DAHLLVESK Unmodified 1010.5397 0.53965977 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.707 1 2 1 1 3 38.17 38.179 3 0.00084769 9883 20211116_3431_TMUAki_TMT10x_P_F4 87.258 60.66 3601900 5334300 32143 6581100 3794600 3574900 3620000 2399800 2613000 2329300 3891700 3354000 4982100 326870 6580800 3635700 3800900 3649900 2497200 2747700 2277800 3714600 4 4 2 4 4 4 4 4 4 4 4 1999400 2737300 12808 3559000 2307600 2147200 1810100 1185000 1317000 1136000 1904600 1861800 2557300 182020 3551600 2200900 2252900 1846800 1252000 1382200 1111500 1819100 1 1 1 1 1 1 1 1 1 1 1 1602500 2596900 19335 3022100 1486900 1427700 1809900 1214800 1296000 1193300 1987100 1492200 2424800 144850 3029200 1434800 1548000 1803100 1245200 1365500 1166300 1895500 3 3 1 3 3 3 3 3 3 3 3 190750000 101810000 88938000 2461 1018 2305 14377;14378;14379;14380 17295;17296;17297;17298 17295 4 DAHNALLDIQSSGR Unmodified 1495.7379 0.73791866 2588 Q99613;Q99613-2;B5ME19 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 0 0 0 0 By MS/MS By MS/MS 3.58 1.19 2 5 2 2 1 7 5 39.615 39.626 3 6.0968E-19 10316 20211116_3442_TMUAki_TMT10x_S_F4 160.46 133.68 9879700 14577000 171510 16579000 14939000 15838000 10639000 11440000 11395000 9601400 13506000 9199400 13609000 937580 16761000 14219000 16082000 11040000 11798000 11635000 9453000 12963000 9 9 5 9 9 9 9 9 9 9 9 6761500 9455300 87992 10635000 12195000 13261000 7932300 7150300 7418300 5963800 8670900 6295400 8827200 616460 10805000 11585000 13210000 8253000 7542800 7613800 5873400 8325700 3 3 1 3 3 3 3 3 3 3 3 3118200 5121500 83519 5944600 2744200 2577100 2706800 4289400 3977200 3637600 4834800 2903900 4782000 321120 5956000 2634700 2871600 2786900 4255300 4021000 3579600 4637400 6 6 4 6 6 6 6 6 6 6 6 1383500000 936150000 447330000 2462 2588 2306 14381;14382;14383;14384;14385;14386;14387;14388;14389;14390;14391;14392 17299;17300;17301;17302;17303;17304;17305;17306;17307;17308;17309;17310;17311 17308 13 DAHSQGEVVSCLEK Unmodified 1557.7093 0.70932065 2375 Q92896;Q92896-2;Q92896-3 GLG1 Golgi apparatus protein 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 38.082 37.824 3 1.8388E-06 12174 20211116_3441_TMUAki_TMT10x_S_F3 110.55 96.584 371740 617540 7775 760350 336990 313340 327990 405090 441040 320780 536460 346180 576770 37579 758910 323370 348840 336670 404710 447120 316770 514550 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 371740 617540 7775 760350 336990 313340 327990 405090 441040 320780 536460 346180 576770 37579 758910 323370 348840 336670 404710 447120 316770 514550 1 1 1 1 1 1 1 1 1 1 1 20158000 0 20158000 2463 2375 2307 14393 17312 17312 1 DAIDREVEAVDSEYQLAR Unmodified 2077.9916 0.99162674 251 O43847;O43847-2 NRD1 Nardilysin yes no 0 0 0 1 By MS/MS 1 0 1 1 64.842 64.59 3 6.9492E-09 22025 20211116_3439_TMUAki_TMT10x_S_F1 119.5 92.727 3351600 5904400 14487 4826900 3394000 3677100 3308600 4111500 3585000 4113200 4199700 3120800 5505400 291970 4983100 3253000 3826600 3369100 4158400 3656800 4017100 4032300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3351600 5904400 14487 4826900 3394000 3677100 3308600 4111500 3585000 4113200 4199700 3120800 5505400 291970 4983100 3253000 3826600 3369100 4158400 3656800 4017100 4032300 1 1 1 1 1 1 1 1 1 1 1 638250000 0 638250000 2464 251 2308 14394 17313 17313 1 DAIHFYNK Unmodified 1006.4872 0.48723027 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 By MS/MS 5 0 1 1 40.434 40.465 3 0.033113 10912 20211116_3433_TMUAki_TMT10x_P_F5 50.607 20.797 3870000 6620500 0 6902300 11715000 9766400 5347400 5816500 5574700 4081900 5429200 3603200 6178700 411980 7064400 11072000 9683900 5764100 6061200 5656200 4058100 5241900 1 1 0 1 1 1 1 1 1 1 1 3870000 6620500 0 6902300 11715000 9766400 5347400 5816500 5574700 4081900 5429200 3603200 6178700 411980 7064400 11072000 9683900 5764100 6061200 5656200 4058100 5241900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 161740000 161740000 0 2465 897 2309 14395 17314 17314 1 DAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSIIADR Oxidation (M) 3916.9894 0.98940568 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 1 1 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 71.265 71.196 5 1.6822E-16 22719 20211116_3428_TMUAki_TMT10x_P_F1 104.88 99.41 2805000 5170800 41484 4525700 3371800 5156700 3422500 3536900 3326800 3899200 4371100 2612100 4822500 152050 4672000 3236800 5178000 3466000 3688700 3425600 3793200 4184400 2 2 1 2 2 2 2 2 2 2 2 1390300 2404700 41484 2040800 1256300 3267400 1746700 1749500 1816300 1887300 2140300 1294900 2242500 152050 2126000 1219500 3218900 1748200 1859500 1856200 1837600 2054600 1 1 1 1 1 1 1 1 1 1 1 1414700 2766100 0 2484900 2115400 1889200 1675800 1787500 1510500 2011900 2230900 1317200 2580000 0 2545900 2017300 1959100 1717700 1829200 1569500 1955600 2129700 1 1 0 1 1 1 1 1 1 1 1 2048100000 1122400000 925710000 2466 629 2310 14396;14397 17315;17316 17315 650 2 DAINQGMDEELERDEK Oxidation (M) 1906.8214 0.82144987 619 P11177;P11177-2;P11177-3 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes no 0 0 1 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 36.743 36.647 3 2.577E-10 10572 20211116_3439_TMUAki_TMT10x_S_F1 121.62 110.24 1869400 2865900 18967 4147000 4000000 2603900 2065100 1301900 1876300 1007000 2265200 1740700 2679000 202500 4117100 3787900 2718600 2190000 1380500 1930800 995680 2173100 3 3 3 3 3 3 3 3 3 3 3 1296700 1942800 18213 2807900 3560900 2226200 1666600 863440 1247100 687160 1526400 1207500 1816000 156190 2794700 3367800 2273100 1776600 941380 1297000 678380 1463800 2 2 2 2 2 2 2 2 2 2 2 572640 923160 754.14 1339200 439070 377780 398420 438430 629110 319880 738810 533190 862960 46308 1322400 420030 445520 413400 439160 633810 317300 709310 1 1 1 1 1 1 1 1 1 1 1 318390000 263580000 54805000 2467 619 2311 14398;14399;14400 17317;17318;17319 17319 626 3 DAINQGMDEELERDEK Unmodified 1890.8265 0.82653525 619 P11177;P11177-2;P11177-3 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 45.902 45.902 3 8.8575E-47 12340 20211116_3428_TMUAki_TMT10x_P_F1 242.45 209.64 1951300 2960700 0 4747000 4507200 3347600 2769400 1269700 1170200 1155200 1948800 1816600 2769300 162810 4695600 4275800 3450000 2850500 1392400 1288100 1132900 1855800 1 1 0 1 1 1 1 1 1 1 1 1951300 2960700 0 4747000 4507200 3347600 2769400 1269700 1170200 1155200 1948800 1816600 2769300 162810 4695600 4275800 3450000 2850500 1392400 1288100 1132900 1855800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 224520000 224520000 0 2468 619 2311 14401;14402;14403 17320;17321;17322 17320 3 DAIPENLPPLTADFAEDK Unmodified 1954.9524 0.95238769 38 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS 2.4 1.11 3 2 3 2 6 4 77.142 77.086 2;3 5.226E-17 26584 20211116_3429_TMUAki_TMT10x_P_F2 147.26 111.75 + 63389000 92414000 463960 88688000 64598000 76212000 66828000 50752000 60665000 57649000 69577000 59020000 86218000 5140800 90553000 61987000 77838000 67479000 53092000 62302000 56019000 66843000 14 14 7 14 14 14 14 14 14 14 14 33999000 47586000 146130 44593000 30971000 50303000 36247000 25114000 31918000 29956000 35366000 31654000 44392000 2523200 45789000 29813000 50328000 36357000 26950000 32783000 29057000 34009000 7 7 2 7 7 7 7 7 7 7 7 29390000 44828000 317830 44095000 33627000 25909000 30581000 25638000 28747000 27693000 34211000 27366000 41826000 2617600 44764000 32174000 27510000 31122000 26142000 29519000 26962000 32833000 7 7 5 7 7 7 7 7 7 7 7 6622900000 3672600000 2950300000 2469 38 2312 14404;14405;14406;14407;14408;14409;14410;14411;14412;14413 17323;17324;17325;17326;17327;17328;17329;17330;17331;17332;17333;17334;17335;17336;17337 17325 15 DAIPENLPPLTADFAEDKDVCK Unmodified 2457.1734 0.17335586 38 CON__P02769 yes yes 0 0 0 1 By MS/MS By MS/MS 3.8 1.33 4 9 4 4 4 14 11 75.48 75.373 3;4;5 2.3352E-19 26131 20211116_3441_TMUAki_TMT10x_S_F3 142.99 135.54 + 257900000 362210000 1604900 284390000 377730000 340290000 346170000 436590000 563730000 488070000 374540000 240130000 337690000 21080000 296450000 361390000 345380000 359520000 440580000 557270000 474560000 367170000 48 48 21 48 48 48 48 48 48 48 48 129530000 179220000 983830 143650000 180680000 254340000 236680000 212480000 276210000 241090000 184540000 120610000 167100000 10228000 150720000 174670000 251340000 238370000 219000000 276010000 234280000 180860000 26 26 11 26 26 26 26 26 26 26 26 128360000 182990000 621030 140730000 197050000 85953000 109490000 224110000 287520000 246980000 190000000 119520000 170600000 10852000 145740000 186720000 94047000 121150000 221570000 281250000 240270000 186310000 22 22 10 22 22 22 22 22 22 22 22 54855000000 30941000000 23915000000 2470 38 2313 14414;14415;14416;14417;14418;14419;14420;14421;14422;14423;14424;14425;14426;14427;14428;14429;14430;14431;14432;14433;14434;14435;14436;14437;14438 17338;17339;17340;17341;17342;17343;17344;17345;17346;17347;17348;17349;17350;17351;17352;17353;17354;17355;17356;17357;17358;17359;17360;17361;17362;17363;17364;17365;17366;17367;17368;17369;17370;17371;17372;17373;17374;17375;17376;17377;17378;17379;17380;17381;17382;17383;17384;17385 17370 48 DAKDKLESEMEDAYHEHQANLLR Oxidation (M) 2757.2664 0.2664214 777 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 1 2 By MS/MS By MS/MS 4 0.577 1 4 1 2 4 43.665 43.736 5;6 4.7821E-11 10986 20211116_3444_TMUAki_TMT10x_S_F5 107.08 99.187 7170000 11887000 43749 12203000 13316000 18277000 9402200 29970000 25471000 20863000 16507000 6675600 11093000 590250 12518000 12667000 18507000 10239000 29609000 24891000 20751000 16201000 7 7 2 7 7 7 7 7 7 7 7 2846100 4208200 31934 4614400 7533600 11913000 5295800 11642000 9714000 7811700 6369400 2650200 3928200 319970 4787900 7168500 11679000 5625500 11736000 9570300 7787200 6247900 2 2 1 2 2 2 2 2 2 2 2 4323900 7678500 11815 7589000 5782800 6364200 4106400 18328000 15757000 13052000 10138000 4025500 7164500 270280 7730000 5498200 6827800 4613600 17873000 15321000 12964000 9953500 5 5 1 5 5 5 5 5 5 5 5 2802700000 1222500000 1580200000 2471 777 2314 14439;14440;14441;14442;14443;14444 17386;17387;17388;17389;17390;17391 17391 907 6 DALECLEQAEEIIQQEHSDKEEVR Unmodified 2897.3349 0.33489489 1620 Q13325;Q13325-2 IFIT5 Interferon-induced protein with tetratricopeptide repeats 5 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 74.031 73.985 4 1.8743E-72 23816 20211116_3428_TMUAki_TMT10x_P_F1 240.31 222.22 16293000 26571000 323790 27002000 15053000 19866000 15949000 9431400 10081000 13089000 17795000 15171000 24795000 1502400 27409000 14467000 20444000 15950000 10225000 10786000 12633000 16927000 4 4 2 4 4 4 4 4 4 4 4 8856700 14355000 273410 13496000 6729600 12885000 8047800 4644800 5272200 7213000 9060800 8248300 13391000 939670 13820000 6501100 12979000 8008400 5215200 5619400 6938800 8623400 2 2 1 2 2 2 2 2 2 2 2 7436000 12216000 50378 13506000 8323100 6981200 7901500 4786700 4808900 5876000 8734100 6923100 11404000 562720 13590000 7965700 7465200 7941200 5010100 5166800 5693900 8303900 2 2 1 2 2 2 2 2 2 2 2 2706600000 1590500000 1116200000 2472 1620 2315 14445;14446 17392;17393;17394;17395 17393 4 DALLVGVPAGSNPFREPR Unmodified 1894.0061 0.006095016 1131 P50151;Q9H1X3-3 GNG10 Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-10 yes no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 59.33 59.689 3 1.119E-12 17559 20211116_3447_TMUAki_TMT10x_S_F8 138.55 123.03 46311000 79276000 246360 77798000 52867000 68948000 50162000 52589000 51323000 50055000 56256000 43121000 73967000 4103600 79339000 50634000 70418000 51059000 54218000 52336000 48991000 54115000 7 7 5 7 7 7 7 7 7 7 7 30395000 50200000 202810 50849000 34202000 52290000 33089000 32796000 32974000 32054000 35233000 28302000 46844000 2712400 51850000 32775000 52743000 33618000 34307000 33630000 31336000 33918000 4 4 3 4 4 4 4 4 4 4 4 15916000 29076000 43546 26949000 18665000 16658000 17072000 19793000 18349000 18001000 21023000 14819000 27123000 1391300 27489000 17859000 17675000 17440000 19912000 18706000 17655000 20197000 3 3 2 3 3 3 3 3 3 3 3 2843600000 1266900000 1576700000 2473 1131 2316 14447;14448;14449;14450 17396;17397;17398;17399;17400;17401;17402 17402 7 DALNLAQMQEQTLQLEQQSK Unmodified 2315.1427 0.14272443 2973 Q9NVI7;Q9NVI7-2 ATAD3A ATPase family AAA domain-containing protein 3A no no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 75.1 75.04 3 5.5653E-09 24137 20211116_3445_TMUAki_TMT10x_S_F6 105.32 90.555 1780000 3116100 0 3005500 2216400 1613400 2299900 1341600 1031900 1262000 1785800 1657200 2907200 133410 3053100 2126000 1723300 2289300 1375400 1132100 1235800 1699400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1780000 3116100 0 3005500 2216400 1613400 2299900 1341600 1031900 1262000 1785800 1657200 2907200 133410 3053100 2126000 1723300 2289300 1375400 1132100 1235800 1699400 1 1 0 1 1 1 1 1 1 1 1 559010000 0 559010000 2474 2973 2317 14451;14452 17403;17404 17404 2 DALRDEYDDLSDLNAVQMESVR Oxidation (M) 2569.1602 0.16022499 172 O15173;O15173-2 PGRMC2 Membrane-associated progesterone receptor component 2 yes no 0 0 1 1 By MS/MS 1 0 1 1 64.266 64.014 3 2.7457E-19 21759 20211116_3439_TMUAki_TMT10x_S_F1 142.04 135.73 2933400 5647700 60309 5043300 3327200 3898700 3994500 3392100 3434100 3585800 4021500 2731800 5267600 304920 5170500 3210700 4031000 3999500 3480200 3539000 3494100 3861200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2933400 5647700 60309 5043300 3327200 3898700 3994500 3392100 3434100 3585800 4021500 2731800 5267600 304920 5170500 3210700 4031000 3999500 3480200 3539000 3494100 3861200 2 2 2 2 2 2 2 2 2 2 2 468830000 0 468830000 2475 172 2318 14453 17405;17406 17405 132 2 DALSDLALHFLNK Unmodified 1455.7722 0.7721789 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 By MS/MS By MS/MS 6 2.27 1 1 1 2 2 5 2 78.871 78.881 3 4.1984E-36 25934 20211116_3436_TMUAki_TMT10x_P_F8 259.47 220.69 58073000 93489000 691320 99671000 48188000 101830000 74877000 48123000 57301000 68403000 70692000 54076000 87258000 5206800 101280000 46910000 102390000 74012000 52246000 59539000 65971000 67779000 8 8 5 8 8 8 8 8 8 8 8 33249000 51695000 230770 54807000 33348000 62938000 38216000 26791000 32102000 37545000 38735000 30959000 48249000 2923400 55814000 32109000 62804000 38321000 29386000 33162000 36226000 37161000 5 5 3 5 5 5 5 5 5 5 5 24824000 41794000 460550 44865000 14840000 38887000 36661000 21332000 25199000 30858000 31956000 23117000 39010000 2283400 45463000 14801000 39590000 35691000 22860000 26377000 29745000 30618000 3 3 2 3 3 3 3 3 3 3 3 12019000000 7362000000 4656600000 2476 1147 2319 14454;14455;14456;14457;14458;14459;14460 17407;17408;17409;17410;17411;17412;17413;17414 17411 8 DALSSVQESQVAQQAR Unmodified 1715.8438 0.84384029 479 P02656 APOC3 Apolipoprotein C-III yes yes 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 40.988 40.686 3 2.7374E-10 10713 20211116_3442_TMUAki_TMT10x_S_F4 120.21 101.38 876170 1482300 17337 1810600 637130 732620 740460 1541500 1455600 1151600 1355400 815930 1384300 85450 1807800 614560 831010 767820 1514800 1446000 1140800 1310600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 876170 1482300 17337 1810600 637130 732620 740460 1541500 1455600 1151600 1355400 815930 1384300 85450 1807800 614560 831010 767820 1514800 1446000 1140800 1310600 2 2 2 2 2 2 2 2 2 2 2 60733000 0 60733000 2477 479 2320 14461;14462 17415;17416;17417 17417 3 DAMLELNASNDR Oxidation (M) 1363.6038 0.60379294 929 P35250 RFC2 Replication factor C subunit 2 yes yes 0 0 1 0 By MS/MS By MS/MS 2 0 3 1 2 36.937 37.036 2;3 1.1185E-11 10641 20211116_3429_TMUAki_TMT10x_P_F2 136.96 116.09 284540 462250 0 523850 269530 268010 321710 309220 355710 318370 376560 264920 431560 21030 526230 259590 289740 324650 312580 361130 310560 362610 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 284540 462250 0 523850 269530 268010 321710 309220 355710 318370 376560 264920 431560 21030 526230 259590 289740 324650 312580 361130 310560 362610 2 2 0 2 2 2 2 2 2 2 2 21965000 0 21965000 2478 929 2321 14463;14464;14465 17418;17419;17420 17418 1166 3 DAMLELNASNDRGIDVVR Oxidation (M) 2002.9742 0.97420254 929 P35250 RFC2 Replication factor C subunit 2 yes yes 0 0 1 1 By matching By MS/MS 3 0 2 1 1 47.526 47.34 3 0.00025195 16076 20211116_3441_TMUAki_TMT10x_S_F3 70.335 50.595 597900 1109500 1888.1 1051900 679840 638350 502350 1047300 1020400 907550 1081100 556720 1035100 52477 1071000 647520 685010 534870 1040000 1017500 892120 1041000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 597900 1109500 1888.1 1051900 679840 638350 502350 1047300 1020400 907550 1081100 556720 1035100 52477 1071000 647520 685010 534870 1040000 1017500 892120 1041000 1 1 1 1 1 1 1 1 1 1 1 146650000 59127000 87523000 2479 929 2322 14466;14467 17421 17421 1166 1 DANLYISGLPR Unmodified 1217.6404 0.64043645 1825 Q15717;Q15717-2 ELAVL1 ELAV-like protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.8 0.748 2 2 1 3 2 55.802 56.05 2 2.3601E-06 16266 20211116_3445_TMUAki_TMT10x_S_F6 127.87 96.495 47831000 77251000 1009700 85240000 57911000 74725000 49497000 59513000 63680000 59215000 60261000 44543000 72113000 5047700 86237000 55377000 76432000 51086000 61268000 64042000 57845000 58238000 6 6 6 6 6 6 6 6 6 6 6 25372000 40374000 379560 44080000 37996000 54541000 29833000 30955000 34134000 31065000 31318000 23627000 37687000 2634100 44864000 36250000 54388000 30820000 32667000 34437000 30335000 30298000 3 3 3 3 3 3 3 3 3 3 3 22459000 36876000 630150 41160000 19915000 20184000 19664000 28558000 29547000 28151000 28943000 20917000 34426000 2413700 41374000 19127000 22044000 20265000 28601000 29605000 27510000 27939000 3 3 3 3 3 3 3 3 3 3 3 3941200000 2135500000 1805700000 2480 1825 2323 14468;14469;14470;14471;14472 17422;17423;17424;17425;17426;17427 17427 6 DANLYVSGLPK Unmodified 1175.6186 0.61863837 815;1717 P26378;P26378-4;P26378-2;P26378-5;P26378-1;P26378-3;Q12926;Q12926-2;Q14576-2;Q14576 ELAVL4;ELAVL2;ELAVL3 ELAV-like protein 4;ELAV-like protein 2;ELAV-like protein 3 no no 0 0 0 0 By MS/MS By MS/MS 5.83 0.687 2 3 1 3 3 55.691 55.911 2;3 2.3722E-08 15859 20211116_3434_TMUAki_TMT10x_P_F6 125.23 93.291 23150000 37437000 377960 44507000 33672000 35562000 23475000 29518000 31343000 27977000 31050000 21557000 34959000 2395200 44771000 32051000 36644000 24588000 30270000 31532000 27388000 29962000 5 5 4 5 5 5 5 5 5 5 5 11332000 18140000 165950 19514000 22968000 26048000 14263000 14773000 14915000 12967000 15040000 10552000 16932000 1257100 19908000 21814000 25879000 14943000 15535000 15150000 12738000 14504000 3 3 3 3 3 3 3 3 3 3 3 11818000 19296000 212010 24993000 10704000 9514400 9211500 14745000 16428000 15011000 16011000 11005000 18027000 1138100 24863000 10237000 10765000 9645100 14735000 16382000 14649000 15458000 2 2 1 2 2 2 2 2 2 2 2 2131000000 1005400000 1125600000 2481 815;1717 2324 14473;14474;14475;14476;14477;14478 17428;17429;17430;17431;17432;17433;17434 17431 7 DAPQDFHPDR Unmodified 1196.521 0.52104959 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 29.983 29.877 3 0.00041012 7475 20211116_3429_TMUAki_TMT10x_P_F2 94.82 75.033 1071500 1828600 8307.3 1690200 1419100 1526100 1391900 970310 1250700 1093800 1466900 997770 1705700 101450 1731600 1360500 1552300 1408900 1018300 1286200 1063200 1408400 4 4 4 4 4 4 4 4 4 4 4 603970 1030600 5713.8 965850 871670 1038900 745040 463670 612770 569740 756950 562390 961410 59147 990990 832960 1041000 758250 503640 634290 552070 725740 2 2 2 2 2 2 2 2 2 2 2 467580 797970 2593.4 724310 547410 487170 646900 506640 637920 524110 709960 435380 744310 42300 740570 527540 511360 650700 514660 651920 511150 682650 2 2 2 2 2 2 2 2 2 2 2 55443000 38438000 17005000 2482 755 2325 14479;14480;14481;14482 17435;17436;17437;17438 17436 4 DAPTHLPSVDLSNPFTK Unmodified 1837.921 0.92102798 1948 Q5VT52;Q5VT52-2;Q5VT52-3 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 63.905 64.049 3 1.4209E-16 19615 20211116_3445_TMUAki_TMT10x_S_F6 159.34 146.72 10056000 18179000 176800 17005000 12588000 14525000 10907000 15840000 14424000 14646000 15144000 9364300 16958000 1031500 17394000 12038000 14980000 11261000 16003000 14545000 14353000 14587000 4 4 3 4 4 4 4 4 4 4 4 2371000 4407800 64883 4297900 3450900 6227600 3149400 4192600 3311500 3664800 3846500 2208200 4112500 272170 4421200 3305200 6179500 3215300 4349600 3380800 3601000 3694000 1 1 1 1 1 1 1 1 1 1 1 7684900 13771000 111920 12708000 9137000 8297500 7758100 11648000 11112000 10981000 11298000 7156200 12846000 759290 12973000 8732900 8800200 8045300 11653000 11165000 10752000 10893000 3 3 2 3 3 3 3 3 3 3 3 1258200000 432060000 826110000 2483 1948 2326 14483;14484;14485;14486 17439;17440;17441;17442;17443 17441 5 DAQDAEAAMDGAELDGR Oxidation (M) 1749.7112 0.71117114 2639 Q9BRL6;Q9BRL6-2 SRSF8 Serine/arginine-rich splicing factor 8 yes no 0 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 37.322 37.279 3 9.852E-08 8898 20211116_3428_TMUAki_TMT10x_P_F1 108.25 104.01 469350 756330 3243 972380 853650 664250 471420 638720 864720 525700 779330 437010 706550 43820 972120 808880 695130 510340 647310 859460 518080 754430 2 2 1 2 2 2 2 2 2 2 2 222070 302650 3243 411710 643970 500730 283840 273200 376190 243180 312610 206790 282820 27342 413640 608610 499510 309600 288360 376410 238740 303530 1 1 1 1 1 1 1 1 1 1 1 247280 453680 0 560670 209680 163520 187580 365510 488530 282520 466710 230220 423730 16478 558480 200270 195620 200740 358950 483050 279350 450900 1 1 0 1 1 1 1 1 1 1 1 103380000 63939000 39442000 2484 2639 2327 14487;14488 17444;17445 17444 2876 2 DAQHYGGWEHR Unmodified 1354.5803 0.58029581 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 28.092 27.977 4 0.0042755 8322 20211116_3441_TMUAki_TMT10x_S_F3 63.864 52.27 254130 399350 4557.6 294080 317430 378620 321890 233800 262380 235080 306940 236650 372250 26203 308710 304760 377240 324430 245060 271110 229540 294720 2 2 2 2 2 2 2 2 2 2 2 189150 275000 2243 194550 234840 293940 218440 171110 178800 160260 206360 176130 256300 18412 205640 224900 290550 221200 179850 184610 156970 198210 1 1 1 1 1 1 1 1 1 1 1 64980 124360 2314.6 99535 82591 84683 103450 62690 83581 74820 100580 60520 115950 7791.1 103070 79857 86691 103230 65212 86502 72573 96503 1 1 1 1 1 1 1 1 1 1 1 11787000 6888500 4898400 2485 1730 2328 14489;14490 17446;17447 17447 2 DAQPSFSAEDIAK Unmodified 1377.6412 0.64122431 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 3 1 50.687 50.744 2;3 2.1272E-22 16333 20211116_3430_TMUAki_TMT10x_P_F3 181.44 135.76 9704400 15704000 157750 19969000 23424000 24095000 13438000 16977000 18405000 13800000 16733000 9036300 14670000 1059500 20133000 22213000 24132000 14306000 17525000 18448000 13609000 16193000 5 5 3 5 5 5 5 5 5 5 5 7877800 12317000 98625 15432000 21735000 22169000 11976000 13350000 14879000 10768000 13293000 7335100 11504000 854930 15624000 20596000 21970000 12747000 13941000 14954000 10623000 12872000 4 4 2 4 4 4 4 4 4 4 4 1826600 3387700 59129 4537200 1689000 1926600 1462100 3627200 3526100 3032600 3440000 1701200 3165400 204620 4508500 1617400 2161900 1558900 3584300 3493800 2986300 3321100 1 1 1 1 1 1 1 1 1 1 1 1306100000 1005800000 300320000 2486 799 2329 14491;14492;14493;14494 17448;17449;17450;17451;17452;17453 17451 6 DAQTQLVGLHAK Unmodified 1279.6884 0.68844927 2542 Q96R06 SPAG5 Sperm-associated antigen 5 yes yes 0 0 0 0 By MS/MS 6 0 1 1 38.061 38.056 3 0.047179 8684 20211116_3434_TMUAki_TMT10x_P_F6 46.206 29.574 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2487 2542 2330 14495 17454 17454 1 DASDDLDDLNFFNQK Unmodified 1755.7588 0.75877326 738 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 0 0 0 0 By matching By MS/MS 2.38 0.992 2 2 3 1 3 5 77.357 77.299 3 9.027E-10 27139 20211116_3439_TMUAki_TMT10x_S_F1 129.54 122.88 7667500 13131000 74585 12376000 9673100 7887200 9305400 6571600 7162800 7479100 9164100 7139600 12250000 715190 12612000 9269200 8282300 9391700 6775100 7451700 7267100 8778300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7667500 13131000 74585 12376000 9673100 7887200 9305400 6571600 7162800 7479100 9164100 7139600 12250000 715190 12612000 9269200 8282300 9391700 6775100 7451700 7267100 8778300 2 2 1 2 2 2 2 2 2 2 2 4324000000 2534300000 1789700000 2488 738 2331 14496;14497;14498;14499;14500;14501;14502;14503 17455;17456;17457;17458 17455 4 DASDDLDDLNFFNQKK Unmodified 1883.8537 0.85373628 738 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 0 0 0 1 By matching By MS/MS 5 0 2 1 1 68.563 68.618 3 0.00076843 21199 20211116_3444_TMUAki_TMT10x_S_F5 68.257 47.606 3637800 6391700 63207 6446100 3927100 3499700 3481000 3373700 3996900 3732300 4690200 3387600 5964300 364550 6528200 3758100 3744200 3570200 3447300 4068200 3630400 4503000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3637800 6391700 63207 6446100 3927100 3499700 3481000 3373700 3996900 3732300 4690200 3387600 5964300 364550 6528200 3758100 3744200 3570200 3447300 4068200 3630400 4503000 1 1 1 1 1 1 1 1 1 1 1 862830000 480270000 382560000 2489 738 2332 14504;14505 17459 17459 1 DASIVGFFDDSFSEAHSEFLK Unmodified 2347.0645 0.064457335 868 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 By MS/MS By MS/MS 2.71 1.03 1 2 2 2 5 2 79.508 79.485 3 5.9426E-54 26541 20211116_3431_TMUAki_TMT10x_P_F4 208.13 198.97 16257000 24687000 152200 25963000 11626000 17239000 14045000 7524900 9475200 10332000 15068000 15138000 23041000 1424800 26266000 11218000 17881000 13979000 8225100 10038000 9974800 14363000 3 3 3 3 3 3 3 3 3 3 3 11148000 16413000 119520 17431000 7039700 12777000 7863400 5144300 6302900 6801700 10189000 10381000 15319000 978120 17641000 6777900 13132000 7884800 5665200 6618300 6574600 9708800 2 2 2 2 2 2 2 2 2 2 2 5108700 8274200 32684 8532300 4586700 4461600 6181900 2380600 3172200 3529900 4879000 4757000 7721700 446700 8625200 4440000 4749500 6094000 2559900 3419500 3400200 4653700 1 1 1 1 1 1 1 1 1 1 1 3445600000 2259000000 1186600000 2490 868 2333 14506;14507;14508;14509;14510;14511;14512 17460;17461;17462;17463;17464;17465 17464 6 DASLMVTNDGATILK Oxidation (M) 1563.7814 0.78142296 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 1 0 By MS/MS By MS/MS 4 0.816 4 4 4 6 6 57.63 57.623 2;3 7.7227E-14 17483 20211116_3431_TMUAki_TMT10x_P_F4 149.58 119.83 72589000 114140000 770500 115820000 108030000 123270000 78593000 97925000 104350000 92579000 98844000 67592000 106510000 7088600 118150000 102880000 124550000 82057000 100680000 104840000 90638000 95522000 12 12 7 12 12 12 12 12 12 12 12 39138000 59726000 500990 62447000 72808000 90751000 48362000 50543000 54075000 48705000 51688000 36445000 55741000 4138000 63938000 69224000 89801000 50511000 53363000 54678000 47643000 49935000 6 6 3 6 6 6 6 6 6 6 6 33451000 54414000 269510 53375000 35221000 32520000 30231000 47382000 50277000 43875000 47156000 31147000 50770000 2950500 54212000 33656000 34749000 31546000 47320000 50161000 42995000 45586000 6 6 4 6 6 6 6 6 6 6 6 11534000000 6746200000 4787400000 2491 1429 2334 14513;14514;14515;14516;14517;14518;14519;14520;14521;14522;14523;14524 17466;17467;17468;17469;17470;17471;17472;17473;17474;17475;17476;17477;17478 17469 1923 13 DASLMVTNDGATILK Unmodified 1547.7865 0.78650834 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 4.75 0.924 1 4 4 3 6 6 64.096 64.105 2;3 3.1206E-116 20156 20211116_3431_TMUAki_TMT10x_P_F4 378.52 264.9 76281000 124060000 1209500 137640000 96728000 97785000 86502000 55157000 46511000 59917000 87402000 71034000 115820000 7707400 138860000 92561000 101120000 87039000 58373000 50518000 58322000 83048000 15 15 13 15 15 15 15 15 15 15 15 42093000 68533000 670090 75486000 63565000 73013000 56459000 31416000 27090000 34665000 48029000 39198000 63974000 4406400 76480000 60811000 73599000 56731000 34138000 29587000 33722000 45683000 9 9 8 9 9 9 9 9 9 9 9 34188000 55532000 539430 62156000 33162000 24772000 30043000 23741000 19421000 25252000 39373000 31837000 51842000 3301000 62382000 31750000 27519000 30308000 24235000 20931000 24600000 37364000 6 6 5 6 6 6 6 6 6 6 6 6337000000 3564000000 2773000000 2492 1429 2334 14525;14526;14527;14528;14529;14530;14531;14532;14533;14534;14535;14536 17479;17480;17481;17482;17483;17484;17485;17486;17487;17488;17489;17490;17491;17492;17493;17494 17480 16 DATLLIHEATLEDGLEEEAVEK Unmodified 2424.1908 0.19078006 2622 Q9BQ52;Q9BQ52-4;Q9BQ52-3 ELAC2 Zinc phosphodiesterase ELAC protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 3 2 1 75.889 75.863 3;4 5.3624E-68 26591 20211116_3439_TMUAki_TMT10x_S_F1 238.68 224.53 17977000 29029000 17944 26636000 18535000 29034000 21261000 18989000 18922000 19599000 21723000 16737000 27078000 1320700 27378000 17829000 29205000 21351000 19832000 19452000 19116000 20869000 5 5 2 5 5 5 5 5 5 5 5 11851000 18265000 17221 16909000 10803000 22362000 14284000 13044000 12948000 13397000 13958000 11033000 17038000 795830 17428000 10435000 22235000 14266000 13743000 13266000 13070000 13433000 3 3 1 3 3 3 3 3 3 3 3 6126000 10764000 723 9726800 7731400 6672700 6976300 5945400 5974400 6201900 7765700 5703900 10040000 524860 9950500 7393900 6969700 7084800 6089300 6185300 6046500 7435800 2 2 1 2 2 2 2 2 2 2 2 2654000000 1765000000 889010000 2493 2622 2335 14537;14538;14539 17495;17496;17497;17498;17499 17499 5 DATLTALDR Unmodified 974.50327 0.50327426 992 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 By MS/MS 3 0 1 1 40.297 40.35 2 0.0041496 12062 20211116_3430_TMUAki_TMT10x_P_F3 76.827 47.017 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2494 992 2336 14540 17500 17500 1 DATLTALDRGQQQVFK Unmodified 1789.9323 0.93226137 992 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 1 By MS/MS 6 0 1 1 52.678 52.777 3 0.0010222 14580 20211116_3434_TMUAki_TMT10x_P_F6 66.982 63.488 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2495 992 2337 14541 17501 17501 1 DATNVGDEGGFAPNILENK Unmodified 1959.9174 0.91739917 520 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 0 By MS/MS By MS/MS 3.56 1.14 3 4 5 18 6 28 8 71.582 71.51 2;3 4.9103E-192 23342 20211116_3441_TMUAki_TMT10x_S_F3 433.45 400.84 136100000 223730000 1187700 308780000 133520000 163630000 132930000 98921000 97597000 106690000 151670000 126730000 209080000 10627000 306830000 128050000 174190000 133780000 104070000 102750000 103880000 144630000 43 43 21 43 43 43 43 43 43 42 43 68754000 110920000 1049100 155590000 87335000 119740000 82893000 48176000 49448000 54318000 74557000 64023000 103670000 6676000 155040000 83676000 122580000 83279000 52777000 52659000 52797000 71145000 31 31 17 31 31 31 31 31 31 30 31 67345000 112810000 138610 153190000 46185000 43892000 50040000 50745000 48149000 52370000 77110000 62704000 105410000 3951400 151800000 44373000 51610000 50497000 51297000 50093000 51080000 73489000 12 12 4 12 12 12 12 12 12 12 12 54220000000 34682000000 19538000000 2496 520 2338 14542;14543;14544;14545;14546;14547;14548;14549;14550;14551;14552;14553;14554;14555;14556;14557;14558;14559;14560;14561;14562;14563;14564;14565;14566;14567;14568;14569;14570;14571;14572;14573;14574;14575;14576;14577 17502;17503;17504;17505;17506;17507;17508;17509;17510;17511;17512;17513;17514;17515;17516;17517;17518;17519;17520;17521;17522;17523;17524;17525;17526;17527;17528;17529;17530;17531;17532;17533;17534;17535;17536;17537;17538;17539;17540;17541;17542;17543;17544;17545;17546;17547;17548;17549 17545 48 DATNVGDEGGFAPNILENKEGLELLK Unmodified 2742.3712 0.37120404 520 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 1 By MS/MS By MS/MS 4.06 1.88 3 3 9 3 5 3 5 15 16 77.232 77.208 3;4 1.4129E-73 25652 20211116_3431_TMUAki_TMT10x_P_F4 239.96 224.7 360100000 618960000 3837700 584560000 370430000 442340000 391020000 250510000 242420000 283640000 399020000 335310000 577420000 30066000 596650000 355840000 455090000 390950000 265380000 258680000 275660000 380070000 40 40 26 40 40 40 40 40 40 40 40 154600000 261530000 1206900 245650000 150230000 260990000 175920000 112690000 110020000 124960000 170500000 143950000 243980000 12499000 251960000 144730000 261600000 175060000 122420000 116960000 121530000 162600000 19 19 13 19 19 19 19 19 19 19 19 205500000 357430000 2630900 338910000 220190000 181350000 215100000 137830000 132400000 158690000 228530000 191350000 333450000 17567000 344700000 211110000 193490000 215900000 142950000 141720000 154120000 217470000 21 21 13 21 21 21 21 21 21 21 21 178420000000 81464000000 96959000000 2497 520 2339 14578;14579;14580;14581;14582;14583;14584;14585;14586;14587;14588;14589;14590;14591;14592;14593;14594;14595;14596;14597;14598;14599;14600;14601;14602;14603;14604;14605;14606;14607;14608 17550;17551;17552;17553;17554;17555;17556;17557;17558;17559;17560;17561;17562;17563;17564;17565;17566;17567;17568;17569;17570;17571;17572;17573;17574;17575;17576;17577;17578;17579;17580;17581;17582;17583;17584;17585;17586;17587;17588;17589;17590 17559 41 DATNVGDEGGFAPNILENNEALELLK Unmodified 2742.3348 0.33481854 661 P13929;P13929-3;P13929-2 ENO3 Beta-enolase yes no 0 0 0 0 By MS/MS 3 0 1 1 79.988 79.915 3 1.635E-06 28202 20211116_3430_TMUAki_TMT10x_P_F3 81.839 68.108 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2498 661 2340 14609 17591 17591 1 DATNVGDEGGFAPNILENSEALELVK Unmodified 2701.3083 0.30826943 568 P09104;P09104-2 ENO2 Gamma-enolase yes no 0 0 0 0 By MS/MS 2 0 1 1 20.7 20.504 3 0.00030784 4269 20211116_3429_TMUAki_TMT10x_P_F2 62.1 54.108 9916.1 18170 0 12501 9760.7 12583 12791 6632.9 4515.9 6690.7 10860 9232.9 16933 0 13154 9435.2 12680 12560 7045.9 5181.4 6532.1 10280 1 1 0 1 1 1 1 1 1 1 1 9916.1 18170 0 12501 9760.7 12583 12791 6632.9 4515.9 6690.7 10860 9232.9 16933 0 13154 9435.2 12680 12560 7045.9 5181.4 6532.1 10280 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 453030 453030 0 2499 568 2341 14610 17592 17592 1 DATSDLAIIAR Unmodified 1144.6088 0.60880197 2351 Q92620 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 yes yes 0 0 0 0 By MS/MS 3 0 1 1 52.62 52.469 2 8.0249E-08 17058 20211116_3430_TMUAki_TMT10x_P_F3 123.29 58.131 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2500 2351 2342 14611 17593 17593 1 DATSRPTDNILIPQLIR Unmodified 1922.0585 0.058524517 3109 Q9UGP8 SEC63 Translocation protein SEC63 homolog yes yes 0 0 0 1 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 61.312 61.548 3 1.2316E-36 19953 20211116_3435_TMUAki_TMT10x_P_F7 216.71 199.83 43975000 71547000 701190 71867000 51774000 72559000 50442000 54031000 51001000 52706000 57380000 40950000 66762000 4373600 73304000 49650000 73459000 51253000 55830000 52086000 51530000 55155000 10 10 9 10 10 10 10 10 10 10 10 23170000 37918000 249000 37341000 28818000 51673000 29449000 29306000 27213000 27882000 30098000 21576000 35379000 2197200 38349000 27660000 51254000 29769000 30883000 27884000 27290000 28945000 5 5 4 5 5 5 5 5 5 5 5 20804000 33629000 452190 34526000 22957000 20886000 20993000 24725000 23788000 24824000 27282000 19374000 31383000 2176400 34955000 21990000 22205000 21483000 24947000 24202000 24240000 26210000 5 5 5 5 5 5 5 5 5 5 5 6335700000 3281800000 3053800000 2501 3109 2343 14612;14613;14614;14615;14616;14617 17594;17595;17596;17597;17598;17599;17600;17601;17602;17603 17595 10 DAVLLVFANK Unmodified 1088.623 0.62299547 1301;1453 P84085;P61204;P84077;P61204-2 ARF5;ARF3;ARF1 ADP-ribosylation factor 5;ADP-ribosylation factor 3;ADP-ribosylation factor 1 no no 0 0 0 0 By MS/MS By MS/MS 8 0 3 2 1 76.264 76.23 2;3 1.7935E-07 24854 20211116_3436_TMUAki_TMT10x_P_F8 109.29 81.987 9421900 16036000 0 14118000 9869300 15955000 9318700 9131800 9683900 10602000 10575000 8771900 14956000 678900 14566000 9442300 15987000 9492500 9672900 9867300 10293000 10174000 2 2 0 2 2 2 2 2 2 2 2 4723200 7468700 0 6736200 4633000 10198000 2305100 4073500 4706300 5056600 4961100 4397000 6966400 296910 6975600 4377700 10038000 2534200 4480200 4691800 4898000 4777900 1 1 0 1 1 1 1 1 1 1 1 4698800 8566800 0 7381700 5236400 5756600 7013600 5058300 4977600 5545000 5613900 4374900 7989300 381980 7590000 5064600 5949000 6958300 5192700 5175500 5395400 5395800 1 1 0 1 1 1 1 1 1 1 1 874290000 485280000 389010000 2502 1453;1301 2344 14618;14619;14620 17604;17605;17606 17605 3 DAVRDGLR Unmodified 900.47773 0.47772821 982 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 1 By MS/MS 3 0 1 1 27.682 27.398 3 0.049069 8067 20211116_3441_TMUAki_TMT10x_S_F3 49.85 17.895 160900 256020 0 199980 157660 198560 237620 316250 162040 160290 207830 149800 238690 11590 207950 153070 205010 234510 310930 169780 162980 199060 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 160900 256020 0 199980 157660 198560 237620 316250 162040 160290 207830 149800 238690 11590 207950 153070 205010 234510 310930 169780 162980 199060 1 1 0 1 1 1 1 1 1 1 1 4752800 0 4752800 2503 982 2345 14621 17607 17607 1 DAVRGNDTFVTLDEILR Unmodified 1932.9905 0.99050453 1130 P49959;P49959-2;P49959-3 MRE11A Double-strand break repair protein MRE11A yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 70.563 70.395 3 3.4064E-15 23241 20211116_3442_TMUAki_TMT10x_S_F4 141.86 108.55 2442800 4008600 32822 3761900 3030900 2230100 2390400 2634900 2318500 2538900 3059200 2274700 3739500 241350 3832200 2892100 2375500 2455900 2655700 2388100 2483600 2928200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2442800 4008600 32822 3761900 3030900 2230100 2390400 2634900 2318500 2538900 3059200 2274700 3739500 241350 3832200 2892100 2375500 2455900 2655700 2388100 2483600 2928200 1 1 1 1 1 1 1 1 1 1 1 479790000 0 479790000 2504 1130 2346 14622;14623 17608;17609 17608 2 DAVTYTEHAK Unmodified 1133.5353 0.53530267 1366 P62805 HIST1H4A Histone H4 yes yes 0 0 0 0 By MS/MS By MS/MS 3.22 1.26 4 3 7 9 4 12 15 29.842 29.812 2;3 1.2875E-18 7198 20211116_3431_TMUAki_TMT10x_P_F4 239.49 176.01 123620000 206950000 1523400 159290000 122280000 230280000 138790000 100090000 157490000 135410000 145780000 115110000 192930000 11000000 163970000 117700000 227280000 140050000 105880000 158960000 130790000 140990000 30 30 20 29 30 30 29 29 30 30 30 73966000 121410000 318900 78152000 69906000 168320000 59762000 49921000 100290000 81178000 80252000 68870000 113130000 6167300 81172000 66768000 163250000 61957000 54152000 99522000 77995000 78037000 13 13 7 12 13 13 12 12 13 13 13 49653000 85538000 1204500 81137000 52373000 61952000 79033000 50169000 57195000 54230000 65528000 46237000 79800000 4832500 82797000 50932000 64031000 78096000 51725000 59438000 52797000 62954000 17 17 13 17 17 17 17 17 17 17 17 32139000000 22309000000 9829300000 2505 1366 2347 14624;14625;14626;14627;14628;14629;14630;14631;14632;14633;14634;14635;14636;14637;14638;14639;14640;14641;14642;14643;14644;14645;14646;14647;14648;14649;14650 17610;17611;17612;17613;17614;17615;17616;17617;17618;17619;17620;17621;17622;17623;17624;17625;17626;17627;17628;17629;17630;17631;17632;17633;17634;17635;17636;17637;17638;17639;17640;17641;17642;17643;17644 17622 35 DAVTYTEHAKR Unmodified 1289.6364 0.6364137 1366 P62805 HIST1H4A Histone H4 yes yes 0 0 0 1 By MS/MS By MS/MS 3.83 1.07 1 1 2 2 5 1 29.49 29.397 3;4 1.2965E-15 6114 20211116_3431_TMUAki_TMT10x_P_F4 198.81 158.32 1407500 2469400 32568 2004800 2511100 4765600 2116600 3809800 3079700 2966500 2460100 1310700 2302500 155270 2119300 2399300 4663100 2197400 3896500 3068900 2932000 2392300 5 5 4 5 5 5 5 5 5 5 5 1234800 2183900 31210 1753300 2324000 4565000 1901600 3573900 2854600 2719900 2223800 1149900 2036200 139480 1861100 2219100 4454800 1980500 3658200 2840000 2691600 2164800 4 4 3 4 4 4 4 4 4 4 4 172710 285490 1358.1 251410 187090 200630 214950 235830 225090 246610 236280 160820 266270 15786 258130 180170 208310 216890 238320 228940 240410 227580 1 1 1 1 1 1 1 1 1 1 1 248350000 242700000 5656600 2506 1366 2348 14651;14652;14653;14654;14655;14656 17645;17646;17647;17648;17649 17646 5 DAVVYPILVEFTR Unmodified 1520.8239 0.82388012 3301 Q9Y4L1;Q9Y4L1-2 HYOU1 Hypoxia up-regulated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.57 0.495 3 4 4 3 79.509 79.526 2;3 1.5333E-11 25927 20211116_3445_TMUAki_TMT10x_S_F6 151.92 111.59 21496000 36380000 317350 34693000 26692000 34754000 29635000 22845000 21791000 24468000 26546000 20016000 33940000 2006300 35513000 25677000 35133000 29663000 23877000 22681000 23830000 25461000 5 5 3 5 5 5 5 5 5 5 5 11276000 18942000 30351 17267000 12128000 21372000 13701000 11817000 10956000 11802000 13370000 10498000 17669000 830680 17795000 11661000 21304000 13730000 12497000 11352000 11527000 12822000 3 3 1 3 3 3 3 3 3 3 3 10220000 17438000 287000 17426000 14564000 13382000 15934000 11028000 10835000 12666000 13176000 9517600 16272000 1175600 17718000 14017000 13829000 15933000 11380000 11329000 12303000 12638000 2 2 2 2 2 2 2 2 2 2 2 3830500000 1596900000 2233600000 2507 3301 2349 14657;14658;14659;14660;14661;14662;14663 17650;17651;17652;17653;17654 17653 5 DAYELQEVIGSGATAVVQAALCKPR Unmodified 2645.3483 0.34830053 3102 Q9UEW8;Q9UEW8-2 STK39 STE20/SPS1-related proline-alanine-rich protein kinase yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 80.218 80.2 3 4.2876E-23 26573 20211116_3440_TMUAki_TMT10x_S_F2 156.2 147.49 1036500 1932900 0 1697800 1532000 1378100 1586000 1090300 1098300 1226000 1489400 965050 1802700 87232 1743900 1469900 1417200 1590800 1127200 1152500 1191800 1424700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1036500 1932900 0 1697800 1532000 1378100 1586000 1090300 1098300 1226000 1489400 965050 1802700 87232 1743900 1469900 1417200 1590800 1127200 1152500 1191800 1424700 1 1 0 1 1 1 1 1 1 1 1 416170000 0 416170000 2508 3102 2350 14664;14665 17655;17656 17656 2 DAYERDLEADIIGDTSGHFQK Unmodified 2379.0979 0.097882729 548 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 65.198 65.079 4 2.5311E-44 22237 20211116_3439_TMUAki_TMT10x_S_F1 208.47 170.06 3902700 6693100 6109.4 6985700 4659900 6428500 4435600 4301000 3751000 4510200 5195800 3633800 6246500 334270 7097600 4462500 6535500 4489800 4486600 3897300 4396200 4967400 2 2 1 2 2 2 2 2 2 2 2 2111300 3407800 0 3390400 1969700 4292700 2371500 2347100 1871800 2304500 2616400 1965700 3179800 167470 3473500 1898400 4273700 2369100 2483300 1952500 2252400 2500900 1 1 0 1 1 1 1 1 1 1 1 1791500 3285300 6109.4 3595300 2690300 2135900 2064100 1953900 1879200 2205700 2579300 1668100 3066700 166810 3624100 2564200 2261800 2120700 2003300 1944700 2143800 2466500 1 1 1 1 1 1 1 1 1 1 1 673820000 318800000 355010000 2509 548 2351 14666;14667 17657;17658 17658 2 DAYQVILDGVK Unmodified 1219.6449 0.64485312 2744 Q9BZZ5-2;Q9BZZ5;Q9BZZ5-3;Q9BZZ5-6 API5 Apoptosis inhibitor 5 yes no 0 0 0 0 By MS/MS By MS/MS 5.15 0.948 4 4 4 1 6 7 68.547 68.557 2;3 2.432E-08 21973 20211116_3431_TMUAki_TMT10x_P_F4 153.95 108.86 95626000 164960000 426030 147170000 127590000 145400000 108850000 122880000 127270000 122980000 129280000 89033000 153860000 7952800 151370000 121850000 147730000 111960000 126080000 128740000 120110000 124650000 14 14 7 14 14 14 14 14 14 14 14 36609000 60731000 170020 54281000 46543000 77575000 44872000 44195000 48117000 44619000 45956000 34084000 56644000 2945300 56179000 44571000 76841000 45704000 46632000 48732000 43560000 44399000 6 6 3 6 6 6 6 6 6 6 6 59017000 104230000 256010 92894000 81052000 67824000 63981000 78689000 79149000 78365000 83320000 54949000 97215000 5007500 95193000 77274000 70885000 66260000 79448000 80004000 76548000 80247000 8 8 4 8 8 8 8 8 8 8 8 6195800000 3074300000 3121500000 2510 2744 2352 14668;14669;14670;14671;14672;14673;14674;14675;14676;14677;14678;14679;14680 17659;17660;17661;17662;17663;17664;17665;17666;17667;17668;17669;17670;17671;17672 17659 14 DAYRPTTDADKIEDEVTR Unmodified 2093.9865 0.98654137 3206 Q9UPN3;Q9UPN3-5;Q9UPN3-2;Q9UPN3-4;Q9UPN3-3 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 0 0 0 2 By MS/MS 3 0 1 1 43.117 42.79 4 7.6336E-08 14166 20211116_3441_TMUAki_TMT10x_S_F3 106.49 98.18 892360 1536600 0 1748100 625780 590240 532750 956760 1126000 904820 1244500 830850 1434600 66480 1751100 597440 680950 563620 952710 1123800 885830 1196800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 892360 1536600 0 1748100 625780 590240 532750 956760 1126000 904820 1244500 830850 1434600 66480 1751100 597440 680950 563620 952710 1123800 885830 1196800 1 1 0 1 1 1 1 1 1 1 1 81757000 0 81757000 2511 3206 2353 14681 17673 17673 1 DAYSGGAVNLYHVR Unmodified 1520.7372 0.73719038 838 P28074;P28074-3 PSMB5 Proteasome subunit beta type-5 yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 39.697 39.84 3 1.3774E-14 10799 20211116_3433_TMUAki_TMT10x_P_F5 141.73 122.89 952610 1648900 51351 1881500 932920 717080 832860 1366300 1435300 1263400 1409500 887360 1539500 126560 1885600 895120 816930 868690 1353300 1432900 1238100 1360500 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 952610 1648900 51351 1881500 932920 717080 832860 1366300 1435300 1263400 1409500 887360 1539500 126560 1885600 895120 816930 868690 1353300 1432900 1238100 1360500 3 3 3 3 3 3 3 3 3 3 3 194460000 0 194460000 2512 838 2354 14682;14683;14684 17674;17675;17676;17677 17674 4 DCEDPNPLIR Unmodified 1227.5554 0.55538619 1391;1557 P63010;P63010-2;P63010-3;Q10567;Q10567-3;Q10567-2;Q10567-4 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 no no 0 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 39.736 39.666 2 3.6215E-06 11991 20211116_3439_TMUAki_TMT10x_S_F1 145.9 128.54 2429000 3791500 25504 4654100 5036800 4191300 2755700 3381100 4160900 2892000 3550600 2261800 3541100 257050 4680100 4773400 4280100 2958000 3463900 4149800 2844600 3444000 4 4 2 4 4 4 4 4 4 4 4 1446000 2279100 18075 2562200 4237600 3469500 1904000 1963500 2490100 1785800 2049900 1346500 2127700 172450 2607400 4005400 3444700 2071400 2067100 2492000 1751400 1991100 2 2 1 2 2 2 2 2 2 2 2 983020 1512400 7429.4 2091900 799240 721710 851740 1417600 1670700 1106200 1500700 915330 1413400 84597 2072700 768030 835380 886560 1396900 1657800 1093200 1452900 2 2 1 2 2 2 2 2 2 2 2 154450000 99380000 55067000 2513 1391;1557 2355 14685;14686;14687;14688 17678;17679;17680;17681 17680 4 DCEECIQLEPTFIK Unmodified 1780.8012 0.80117212 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.29 1.03 4 4 4 2 7 7 67.743 67.525 2;3 2.3766E-29 21559 20211116_3431_TMUAki_TMT10x_P_F4 207.95 186.49 122420000 184410000 596830 212040000 113600000 131640000 114820000 78218000 75124000 87825000 122550000 113980000 172180000 9658500 213160000 108930000 137870000 115170000 82510000 79846000 85379000 116750000 20 20 7 20 20 20 20 20 20 20 20 72639000 104600000 151490 121970000 63940000 92702000 64124000 45126000 43163000 50070000 69810000 67630000 97667000 5380200 122760000 61280000 95175000 64385000 48430000 45773000 48697000 66518000 11 11 2 11 11 11 11 11 11 11 11 49777000 79814000 445340 90077000 49660000 38941000 50692000 33092000 31962000 37755000 52742000 46349000 74514000 4278300 90403000 47652000 42693000 50786000 34081000 34073000 36682000 50235000 9 9 5 9 9 9 9 9 9 9 9 17090000000 8391600000 8698700000 2514 897 2356 14689;14690;14691;14692;14693;14694;14695;14696;14697;14698;14699;14700;14701;14702 17682;17683;17684;17685;17686;17687;17688;17689;17690;17691;17692;17693;17694;17695;17696;17697;17698;17699;17700;17701 17691 20 DCEIKQPVFGANYIK Unmodified 1780.8818 0.8818057 2397 Q969T9;Q969T9-2 WBP2 WW domain-binding protein 2 yes no 0 0 0 1 By MS/MS 7 0 2 2 55.759 56.285 3 0.0067504 18394 20211116_3446_TMUAki_TMT10x_S_F7 62.055 45.743 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2515 2397 2357 14703;14704 17702;17703 17703 2 DCEVVMMIGLPGAGK 2 Oxidation (M) 1607.7357 0.73573509 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 2 0 By MS/MS By MS/MS 4.8 0.748 2 2 1 3 2 58.598 58.669 3 6.5016E-05 17039 20211116_3444_TMUAki_TMT10x_S_F5 83.499 68.527 17080000 27971000 358560 28289000 20958000 30208000 20336000 20880000 20288000 19472000 22550000 15906000 26102000 1788600 28865000 20101000 30446000 20659000 21658000 20722000 19076000 21683000 5 5 4 5 5 5 5 5 5 5 5 14441000 23619000 282290 23980000 18078000 27979000 17836000 17651000 17189000 16332000 19336000 13448000 22041000 1495400 24497000 17344000 28024000 18085000 18428000 17591000 16005000 18586000 4 4 3 4 4 4 4 4 4 4 4 2639000 4352000 76272 4309000 2879600 2228800 2499900 3229200 3099300 3140000 3213700 2457800 4060800 293250 4367800 2756200 2421300 2574100 3230100 3130900 3070400 3096600 1 1 1 1 1 1 1 1 1 1 1 1477300000 1146100000 331210000 2516 1474 2358 14705;14706;14707;14708;14709 17704;17705;17706;17707;17708;17709 17709 1990;1991 6 DCEVVMMIGLPGAGK Oxidation (M) 1591.7408 0.74082047 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 1 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 2 3 67.412 67.393 2;3 7.4805E-05 20648 20211116_3444_TMUAki_TMT10x_S_F5 84.566 72.401 10029000 17022000 95397 16696000 12257000 9408300 12033000 8132000 7276800 9063800 11836000 9338400 15882000 923830 16947000 11751000 10005000 12070000 8360300 7772800 8813800 11277000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10029000 17022000 95397 16696000 12257000 9408300 12033000 8132000 7276800 9063800 11836000 9338400 15882000 923830 16947000 11751000 10005000 12070000 8360300 7772800 8813800 11277000 3 3 2 3 3 3 3 3 3 3 3 1233100000 0 1233100000 2517 1474 2358 14710;14711;14712;14713;14714 17710;17711;17712;17713;17714;17715 17712 1990;1991 6 DCEVVMMIGLPGAGK Unmodified 1575.7459 0.74590585 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 By MS/MS By MS/MS 5.25 0.433 3 1 1 3 76.496 76.493 3 0.00053509 25510 20211116_3433_TMUAki_TMT10x_P_F5 73.887 54.563 8303800 12295000 92516 14235000 8708600 8930700 9244300 5092500 4951500 5821900 8450900 7732200 11480000 770540 14306000 8368600 9339000 9216000 5393200 5349300 5655900 8044000 2 2 1 2 2 2 2 2 2 2 2 4165500 5910700 0 6742300 3709800 4903200 3937600 2442800 2244700 2855800 4038200 3878400 5518400 329180 6792000 3562200 5053200 3929800 2620200 2421300 2772100 3839900 1 1 0 1 1 1 1 1 1 1 1 4138200 6384500 92516 7493100 4998800 4027500 5306700 2649600 2706700 2966100 4412800 3853800 5961600 441360 7514000 4806400 4285800 5286200 2773000 2928000 2883800 4204000 1 1 1 1 1 1 1 1 1 1 1 894450000 246130000 648320000 2518 1474 2358 14715;14716;14717;14718 17716;17717;17718 17716 3 DCFGCLR Unmodified 926.37386 0.37385677 344 O75531 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 38.391 38.404 2 0.0014932 9908 20211116_3431_TMUAki_TMT10x_P_F4 136.89 108.38 9550000 14544000 85842 18730000 27644000 18186000 11360000 14323000 14288000 11930000 15465000 8892400 13587000 1094500 18804000 26100000 18474000 12465000 14686000 14449000 11750000 14882000 8 8 4 8 8 8 8 8 8 8 8 5895100 8707500 47886 11455000 23920000 15124000 8360700 8455100 8621800 7120000 9328500 5489000 8135300 756910 11547000 22545000 15031000 9302300 8893200 8784900 7008800 8976900 5 5 2 5 5 5 5 5 5 5 5 3655000 5836800 37956 7274500 3724100 3062200 2998900 5868100 5665800 4810300 6136300 3403400 5451700 337590 7256700 3554800 3442400 3162400 5793000 5664000 4741500 5904900 3 3 2 3 3 3 3 3 3 3 3 866680000 519950000 346730000 2519 344 2359 14719;14720;14721;14722;14723;14724 17719;17720;17721;17722;17723;17724;17725;17726 17721 8 DCFIIYQGHHGDVGAPIADVILPGAAYTEK Unmodified 3226.5757 0.57573428 842 P28331;P28331-3;P28331-4;P28331-5;P28331-2 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 0 0 0 0 By matching By MS/MS 5.2 1.17 2 1 1 1 1 4 75.173 75.178 4 4.7409E-10 24207 20211116_3445_TMUAki_TMT10x_S_F6 85.337 73.023 10820000 18432000 191530 16540000 14750000 14469000 15246000 12026000 13169000 13504000 15267000 10076000 17192000 1130600 16976000 14167000 14812000 15375000 12395000 13563000 13128000 14662000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10820000 18432000 191530 16540000 14750000 14469000 15246000 12026000 13169000 13504000 15267000 10076000 17192000 1130600 16976000 14167000 14812000 15375000 12395000 13563000 13128000 14662000 3 3 3 3 3 3 3 3 3 3 3 3294100000 433350000 2860800000 2520 842 2360 14725;14726;14727;14728;14729 17727;17728 17728 2 DCGATWVVLGHSER Unmodified 1585.7307 0.73072479 1271 P60174;P60174-1;P60174-4 TPI1 Triosephosphate isomerase yes no 0 0 0 0 By MS/MS By MS/MS 4.71 1.03 1 2 2 2 4 3 45.021 45.145 3 1.4474E-29 12698 20211116_3442_TMUAki_TMT10x_S_F4 201.08 178.61 26821000 43796000 350770 49563000 41505000 38661000 32438000 26881000 24702000 25498000 35714000 24974000 40888000 2649300 49992000 39583000 39793000 33138000 27884000 25860000 24960000 34111000 11 11 7 11 11 11 11 11 11 11 11 13313000 20611000 135870 24652000 28065000 28958000 19906000 13895000 13064000 13585000 18086000 12396000 19248000 1337500 24928000 26706000 28896000 20406000 14878000 13768000 13281000 17292000 5 5 2 5 5 5 5 5 5 5 5 13507000 23184000 214900 24912000 13440000 9703000 12532000 12986000 11638000 11913000 17627000 12578000 21640000 1311900 25064000 12877000 10897000 12731000 13005000 12091000 11679000 16819000 6 6 5 6 6 6 6 6 6 6 6 10160000000 6174500000 3985600000 2521 1271 2361 14730;14731;14732;14733;14734;14735;14736 17729;17730;17731;17732;17733;17734;17735;17736;17737;17738;17739 17734 11 DCGATWVVLGHSERR Unmodified 1741.8318 0.83183582 1271 P60174;P60174-1;P60174-4 TPI1 Triosephosphate isomerase yes no 0 0 0 1 By MS/MS By MS/MS 6 0.756 2 3 2 5 2 35.107 35.28 3;4 1.0439E-23 9773 20211116_3435_TMUAki_TMT10x_P_F7 183.41 146.4 6766600 10619000 36623 11616000 12426000 10804000 7879800 5451100 5448900 5326800 8167300 6300200 9912300 619780 11768000 11799000 10936000 8155300 5808700 5746200 5207600 7794500 16 16 9 16 16 16 16 16 16 16 16 5745800 8986500 28999 9667900 11365000 10084000 6954500 4410000 4479300 4456700 6756500 5349700 8387900 528980 9821000 10784000 10120000 7208200 4771500 4746100 4350700 6447200 14 14 8 14 14 14 14 14 14 14 14 1020800 1632400 7624.9 1948100 1061300 720110 925310 1041100 969600 870150 1410800 950530 1524400 90799 1946700 1014600 816560 947060 1037200 1000100 856880 1347300 2 2 1 2 2 2 2 2 2 2 2 2239500000 1563500000 676030000 2522 1271 2362 14737;14738;14739;14740;14741;14742;14743 17740;17741;17742;17743;17744;17745;17746;17747;17748;17749;17750;17751;17752;17753;17754;17755 17751 16 DCGGAAQLAGPAAEADPLGR Unmodified 1895.8796 0.87957387 3309 Q9Y508;Q9Y508-2 RNF114 E3 ubiquitin-protein ligase RNF114 yes no 0 0 0 0 By MS/MS 3 0 1 1 52.964 52.813 3 0.00010576 17209 20211116_3430_TMUAki_TMT10x_P_F3 64.87 47.792 1768700 2712400 53601 3112500 3213500 4428300 2427800 2768900 2886800 2601400 3006000 1647200 2532400 216830 3166700 3064800 4392800 2517900 2893900 2921000 2547600 2896100 1 1 1 1 1 1 1 1 1 1 1 1768700 2712400 53601 3112500 3213500 4428300 2427800 2768900 2886800 2601400 3006000 1647200 2532400 216830 3166700 3064800 4392800 2517900 2893900 2921000 2547600 2896100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 272120000 272120000 0 2523 3309 2363 14744 17756 17756 1 DCHEEVYAGSHQYPGR Unmodified 1903.7908 0.79075887 2801 Q9H3P7 ACBD3 Golgi resident protein GCP60 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 29.203 28.949 4 1.6645E-15 8674 20211116_3441_TMUAki_TMT10x_S_F3 155.57 144.72 114610 204170 2038.8 192900 176750 192870 110030 163330 173990 135560 162040 106710 190470 10738 197590 167830 195820 117080 166730 173780 133540 156680 2 2 1 2 2 2 2 2 2 2 2 72345 109410 2038.8 92089 119210 126610 59811 79733 85580 65110 85438 67375 102020 8554.4 95685 112930 125800 64573 82995 85930 64192 82423 1 1 1 1 1 1 1 1 1 1 1 42262 94763 0 100820 57545 66263 50220 83601 88411 70452 76600 39338 88447 2183.3 101900 54893 70025 52506 83731 87853 69349 74259 1 1 0 1 1 1 1 1 1 1 1 29260000 18797000 10463000 2524 2801 2364 14745;14746 17757;17758 17758 2 DCIGGCSDLVSLQQSGELLTR Unmodified 2307.0835 0.083494993 943 P35754 GLRX Glutaredoxin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 70.576 70.527 3 5.3809E-24 22767 20211116_3431_TMUAki_TMT10x_P_F4 156.15 146.98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2525 943 2365 14747;14748 17759;17760 17759 2 DCLASIAR Unmodified 904.44365 0.44365089 1688 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes yes 0 0 0 0 By MS/MS 4 0 1 1 36.477 36.609 2 0.0026237 9413 20211116_3442_TMUAki_TMT10x_S_F4 107.29 44.58 183730 282380 0 301400 162260 145290 162010 185150 178370 170050 236040 171070 263560 14814 303800 155570 158530 164850 185780 182790 166700 225920 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 183730 282380 0 301400 162260 145290 162010 185150 178370 170050 236040 171070 263560 14814 303800 155570 158530 164850 185780 182790 166700 225920 1 1 0 1 1 1 1 1 1 1 1 7070500 0 7070500 2526 1688 2366 14749 17761 17761 1 DCLINAAK Unmodified 903.4484 0.44840192 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 42.018 42.188 2 0.001852 10429 20211116_3444_TMUAki_TMT10x_S_F5 116.73 80.53 1398700 2370700 635.47 2302200 1252200 1185600 1348100 1437800 1525800 1402700 1931100 1302400 2211900 114510 2336800 1203100 1282400 1367900 1448100 1558800 1371400 1850400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1398700 2370700 635.47 2302200 1252200 1185600 1348100 1437800 1525800 1402700 1931100 1302400 2211900 114510 2336800 1203100 1282400 1367900 1448100 1558800 1371400 1850400 1 1 1 1 1 1 1 1 1 1 1 87109000 0 87109000 2527 712 2367 14750;14751 17762 17762 1 DCQELASISVGSGSRPSSDLQAR Unmodified 2419.1398 0.13976432 2563 Q96T58 SPEN Msx2-interacting protein yes yes 0 0 0 1 By MS/MS 4 0 1 1 44.436 44.647 3 2.7572E-46 12614 20211116_3442_TMUAki_TMT10x_S_F4 214.44 182.61 593040 919760 6674.3 1232000 485520 427330 420760 698220 773500 656940 799130 552230 859400 53882 1222800 464310 491060 441100 695000 772370 643300 770100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 593040 919760 6674.3 1232000 485520 427330 420760 698220 773500 656940 799130 552230 859400 53882 1222800 464310 491060 441100 695000 772370 643300 770100 1 1 1 1 1 1 1 1 1 1 1 91052000 0 91052000 2528 2563 2368 14752 17763 17763 1 DCQIAHGAAQFLR Unmodified 1485.7147 0.7146808 881 P30876 POLR2B DNA-directed RNA polymerase II subunit RPB2 yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 43.334 43.646 3 1.15E-11 10883 20211116_3434_TMUAki_TMT10x_P_F6 143.25 127.36 7671100 12741000 111910 16061000 15265000 13067000 8929000 9599100 10033000 8530300 11651000 7143400 11901000 750140 16105000 14484000 13419000 9422500 9902700 10216000 8375200 11189000 6 6 5 6 6 6 6 6 6 6 6 5011000 7825000 99082 10203000 12615000 10825000 6621100 5893900 6222500 5112600 7440600 4666500 7310500 614290 10250000 11952000 10878000 7017200 6218000 6391000 5025400 7140000 3 3 3 3 3 3 3 3 3 3 3 2660100 4916200 12824 5857900 2649200 2242900 2307900 3705200 3810500 3417600 4210400 2476900 4590900 135850 5855500 2532400 2540800 2405400 3684800 3825000 3349700 4049300 3 3 2 3 3 3 3 3 3 3 3 1140500000 713510000 426960000 2529 881 2369 14753;14754;14755;14756 17764;17765;17766;17767;17768;17769 17764 6 DCQLNAHKDHQYQFLEDAVR Unmodified 2486.1397 0.13970474 1615 Q13263;Q13263-2 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 1 By MS/MS By MS/MS 5.43 1.05 2 1 3 1 3 4 44.179 44.376 4;5 3.5609E-51 11542 20211116_3445_TMUAki_TMT10x_S_F6 227.8 200.84 5915800 11314000 80952 10617000 9715400 11289000 7302100 10747000 9817200 8940400 9948500 5508800 10555000 514700 10890000 9259400 11447000 7610900 10900000 9881900 8806100 9592900 7 7 5 7 7 7 7 7 7 7 7 2118900 4287000 50718 3842000 5461200 7543600 4330200 4039000 3865400 3330400 3689400 1973200 3998600 171760 4006300 5211100 7377900 4437100 4262200 3946400 3281800 3564500 2 2 1 2 2 2 2 2 2 2 2 3797000 7027100 30234 6774600 4254300 3745600 2971900 6708000 5951800 5610000 6259100 3535500 6556100 342940 6883700 4048400 4069100 3173800 6637800 5935500 5524300 6028400 5 5 4 5 5 5 5 5 5 5 5 3055900000 2455500000 600350000 2530 1615 2370 14757;14758;14759;14760;14761;14762;14763 17770;17771;17772;17773;17774;17775;17776 17774 7 DCTSALALVPFSIKPLLR Unmodified 2000.1129 0.11286827 1829 Q15785 TOMM34 Mitochondrial import receptor subunit TOM34 yes yes 0 0 0 1 By MS/MS By MS/MS 5.17 0.687 1 3 2 3 3 78.883 78.879 3;4 1.5854E-18 26489 20211116_3433_TMUAki_TMT10x_P_F5 159.69 144.15 15190000 25495000 315420 23303000 16877000 22783000 17734000 12302000 12238000 14124000 16960000 14145000 23781000 1534600 23920000 16220000 23006000 17773000 13091000 12858000 13719000 16214000 5 5 4 5 5 5 5 5 5 5 5 9553600 15842000 243000 14568000 9890300 16673000 10339000 7893200 8030700 9072200 11141000 8897200 14777000 1023200 14984000 9509300 16658000 10392000 8503600 8381300 8811800 10651000 3 3 3 3 3 3 3 3 3 3 3 5636200 9652900 72416 8734700 6986200 6110100 7395500 4408800 4206900 5051800 5818500 5248000 9003800 511370 8936400 6710600 6348300 7381500 4587700 4476500 4907300 5563000 2 2 1 2 2 2 2 2 2 2 2 4950100000 1875500000 3074600000 2531 1829 2371 14764;14765;14766;14767;14768;14769 17777;17778;17779;17780;17781 17777 5 DCTSALALVPFSIKPLLRR Unmodified 2156.214 0.2139793 1829 Q15785 TOMM34 Mitochondrial import receptor subunit TOM34 yes yes 0 0 0 2 By matching By MS/MS 7 0 2 1 1 75.85 75.982 4 3.4235E-08 26606 20211116_3446_TMUAki_TMT10x_S_F7 109.54 91.627 2533400 4178700 0 4586500 3621500 2065000 2489700 1718300 1540700 1901400 2699100 2358800 3900700 216480 4612400 3443400 2251500 2555300 1770100 1650100 1849500 2567800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2533400 4178700 0 4586500 3621500 2065000 2489700 1718300 1540700 1901400 2699100 2358800 3900700 216480 4612400 3443400 2251500 2555300 1770100 1650100 1849500 2567800 1 1 0 1 1 1 1 1 1 1 1 795640000 316500000 479140000 2532 1829 2372 14770;14771 17782 17782 1 DCVGPEVEK Unmodified 1031.4594 0.45936054 473 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.14 0.639 1 4 2 3 4 36.466 36.408 2;3 3.3459E-05 10258 20211116_3429_TMUAki_TMT10x_P_F2 122.33 77.882 1656700 2931800 6255.5 2566700 2276800 2216100 1999200 1616400 1758700 1559400 2157300 1542500 2734300 143620 2639000 2176000 2265700 2034900 1672000 1813900 1525400 2068700 4 4 2 4 4 4 4 4 4 4 4 648220 1068100 0 985340 1041400 1233700 811350 608810 642960 571670 791020 603520 996320 55239 1014800 992500 1227500 829800 649420 666730 559850 758490 1 1 0 1 1 1 1 1 1 1 1 1008400 1863700 6255.5 1581300 1235400 982330 1187800 1007600 1115800 987760 1366300 938970 1738000 88378 1624200 1183500 1038200 1205100 1022600 1147100 965510 1310300 3 3 2 3 3 3 3 3 3 3 3 206060000 106220000 99846000 2533 473 2373 14772;14773;14774;14775;14776;14777;14778 17783;17784;17785;17786;17787;17788 17784 6 DDASMPLPFDLTDIVSELR Oxidation (M) 2149.0249 0.024900707 2747 Q9C0B1;Q9C0B1-4;Q9C0B1-2;Q9C0B1-3 FTO Alpha-ketoglutarate-dependent dioxygenase FTO yes no 0 0 1 0 By MS/MS 1 0 1 1 82.075 82.053 3 0.00016259 29075 20211116_3439_TMUAki_TMT10x_S_F1 64.83 54.043 1379500 2513100 15289 2518200 1852100 1550400 1616900 1369200 1475600 1451500 1901900 1284600 2345000 135240 2554200 1770900 1635100 1648000 1403800 1522500 1414200 1821500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1379500 2513100 15289 2518200 1852100 1550400 1616900 1369200 1475600 1451500 1901900 1284600 2345000 135240 2554200 1770900 1635100 1648000 1403800 1522500 1414200 1821500 1 1 1 1 1 1 1 1 1 1 1 130420000 0 130420000 2534 2747 2374 14779 17789 17789 2930 1 DDDIAALVVDNGSGMCK Acetyl (Protein N-term);Oxidation (M) 1836.787 0.78697862 1276 P60709 ACTB Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed yes yes 1 0 1 0 By MS/MS By MS/MS 2.39 0.842 8 19 20 4 30 21 40.077 40.005 2;3 2.447E-16 902 20211116_3441_TMUAki_TMT10x_S_F3 67.519 56.996 43841000 73448000 176900 64407000 48604000 61764000 49928000 46542000 47171000 50078000 56920000 40818000 68501000 3387200 66305000 46619000 62742000 50490000 48195000 48455000 48763000 54607000 30 30 12 30 30 30 30 30 30 30 30 16300000 24963000 25439 23259000 16008000 29680000 18896000 15650000 14946000 17450000 20939000 15174000 23287000 953260 23944000 15398000 29525000 18894000 16674000 15591000 16968000 20013000 18 18 4 18 18 18 18 18 18 18 18 27541000 48485000 151460 41149000 32597000 32084000 31032000 30892000 32225000 32628000 35982000 25644000 45214000 2434000 42361000 31221000 33217000 31596000 31521000 32864000 31795000 34594000 12 12 8 12 12 12 12 12 12 12 12 29949000000 9333800000 20615000000 2535 1276 2375 14780;14781;14782;14783;14784;14785;14786;14787;14788;14789;14790;14791;14792;14793;14794;14795;14796;14797;14798;14799;14800;14801;14802;14803;14804;14805;14806;14807;14808;14809;14810;14811;14812;14813;14814;14815;14816;14817;14818;14819;14820;14821;14822;14823;14824;14825;14826;14827;14828;14829;14830 17790;17791;17792;17793;17794;17795;17796;17797;17798;17799;17800;17801;17802;17803;17804;17805;17806;17807;17808;17809;17810;17811;17812;17813;17814;17815;17816;17817;17818;17819 17815 1718 30 DDDIAALVVDNGSGMCK Acetyl (Protein N-term) 1820.7921 0.792064 1276 P60709 ACTB Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed yes yes 1 0 0 0 By MS/MS By MS/MS 2.32 0.785 16 70 41 8 1 87 49 44.272 44.187 2;3 5.2838E-108 25986 20211116_3428_TMUAki_TMT10x_P_F1 223.71 211.13 329120000 527910000 809230 541620000 330210000 278180000 357330000 101260000 78788000 136600000 305380000 306420000 492650000 23557000 547640000 317110000 295660000 352410000 112940000 100380000 131950000 287570000 131 131 49 131 131 131 131 131 131 130 131 139050000 213730000 521960 226850000 122720000 151760000 160910000 47538000 34454000 60425000 128790000 129460000 199490000 9689100 229370000 118590000 156890000 157310000 53979000 43932000 58483000 121320000 86 86 32 86 86 86 86 86 86 86 86 190070000 314180000 287270 314770000 207480000 126410000 196420000 53726000 44334000 76174000 176590000 176960000 293170000 13868000 318260000 198530000 138770000 195110000 58965000 56450000 73471000 166250000 45 45 17 45 45 45 45 45 45 44 45 83538000000 40220000000 43319000000 2536 1276 2375 14831;14832;14833;14834;14835;14836;14837;14838;14839;14840;14841;14842;14843;14844;14845;14846;14847;14848;14849;14850;14851;14852;14853;14854;14855;14856;14857;14858;14859;14860;14861;14862;14863;14864;14865;14866;14867;14868;14869;14870;14871;14872;14873;14874;14875;14876;14877;14878;14879;14880;14881;14882;14883;14884;14885;14886;14887;14888;14889;14890;14891;14892;14893;14894;14895;14896;14897;14898;14899;14900;14901;14902;14903;14904;14905;14906;14907;14908;14909;14910;14911;14912;14913;14914;14915;14916;14917;14918;14919;14920;14921;14922;14923;14924;14925;14926;14927;14928;14929;14930;14931;14932;14933;14934;14935;14936;14937;14938;14939;14940;14941;14942;14943;14944;14945;14946;14947;14948;14949;14950;14951;14952;14953;14954;14955;14956;14957;14958;14959;14960;14961;14962;14963;14964;14965;14966 17820;17821;17822;17823;17824;17825;17826;17827;17828;17829;17830;17831;17832;17833;17834;17835;17836;17837;17838;17839;17840;17841;17842;17843;17844;17845;17846;17847;17848;17849;17850;17851;17852;17853;17854;17855;17856;17857;17858;17859;17860;17861;17862;17863;17864;17865;17866;17867;17868;17869;17870;17871;17872;17873;17874;17875;17876;17877;17878;17879;17880;17881;17882;17883;17884;17885;17886;17887;17888;17889;17890;17891;17892;17893;17894;17895;17896;17897;17898;17899;17900;17901;17902;17903;17904;17905;17906;17907;17908;17909;17910;17911;17912;17913;17914;17915;17916;17917;17918;17919;17920;17921;17922;17923;17924;17925;17926;17927;17928;17929;17930;17931;17932;17933;17934;17935;17936;17937;17938;17939;17940;17941;17942;17943;17944;17945;17946;17947;17948;17949;17950;17951;17952;17953;17954;17955;17956;17957;17958;17959;17960;17961;17962;17963;17964;17965;17966;17967;17968 17820 149 DDEVQVVR Unmodified 958.47197 0.47197413 1306 P61254;Q9UNX3 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 32.626 32.641 2 0.00045223 8985 20211116_3439_TMUAki_TMT10x_S_F1 153.04 96.914 2238000 3647400 0 3205600 2416200 2904100 2498600 1469000 1850900 1814500 2630700 2083400 3401700 135910 3296900 2315400 2944900 2510100 1576300 1939000 1757900 2513600 2 2 0 2 2 2 2 2 2 2 2 1157000 1759800 0 1630400 1460100 1888900 1224800 791940 993600 949390 1318000 1077000 1641600 62557 1676300 1391600 1883700 1247500 865270 1032400 920740 1261400 1 1 0 1 1 1 1 1 1 1 1 1081000 1887500 0 1575200 956110 1015200 1273800 677010 857300 865150 1312700 1006400 1760100 73355 1620600 923800 1061200 1262600 711040 906540 837200 1252200 1 1 0 1 1 1 1 1 1 1 1 97966000 53507000 44459000 2537 1306 2376 14967;14968 17969;17970 17970 2 DDGLFSGDPNWFPKK Unmodified 1721.8049 0.80493559 965 P37802;P37802-2 TAGLN2 Transgelin-2 yes no 0 0 0 1 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 70.277 70.322 3 7.7992E-06 22190 20211116_3445_TMUAki_TMT10x_S_F6 101.3 80.841 40049000 70067000 238300 66363000 46392000 40389000 45764000 21949000 19103000 28036000 43351000 37290000 65366000 3473400 67574000 44471000 42333000 45628000 23429000 21461000 27131000 41069000 4 4 2 4 4 4 4 4 4 4 4 7419700 11929000 0 10954000 8241500 11524000 9787200 3762800 3341200 5246400 7340500 6908400 11127000 617740 11252000 7940600 11531000 9647200 4261900 3823000 5062700 6957300 1 1 0 1 1 1 1 1 1 1 1 32629000 58139000 238300 55409000 38151000 28864000 35977000 18186000 15761000 22790000 36011000 30381000 54239000 2855700 56323000 36531000 30802000 35981000 19167000 17638000 22068000 34112000 3 3 2 3 3 3 3 3 3 3 3 3126800000 930500000 2196300000 2538 965 2377 14969;14970;14971 17971;17972;17973;17974 17973 4 DDGSWEVIEGYR Unmodified 1424.6208 0.62082322 463 P00367;P49448 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 4 2 61.074 60.833 2 2.2419E-22 20494 20211116_3439_TMUAki_TMT10x_S_F1 215.87 189.94 6273700 10186000 0 10205000 7827600 9093100 8165100 6364600 5592000 6306900 7765100 5841400 9504800 537340 10393000 7513700 9270800 8185000 6607100 5878600 6162000 7423400 2 2 0 2 2 2 2 2 2 2 2 4063900 6471800 0 6740000 5619500 6946400 5933200 3767300 3060600 3492300 4930600 3783900 6039900 357970 6860000 5396100 6992300 5913000 3982600 3305700 3422100 4698400 1 1 0 1 1 1 1 1 1 1 1 2209800 3714200 0 3465400 2208200 2146700 2231900 2597300 2531500 2814600 2834500 2057500 3464800 179370 3533100 2117600 2278400 2272000 2624500 2573000 2739900 2725000 1 1 0 1 1 1 1 1 1 1 1 1176200000 1020500000 155700000 2539 463 2378 14972;14973;14974;14975;14976;14977 17975;17976;17977;17978 17977 4 DDGVSIPGEYTSFLAPISSSK Unmodified 2169.0477 0.047744639 128 O14744;O14744-5;O14744-2;O14744-3;O14744-4 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed yes no 0 0 0 0 By MS/MS 7 0 1 1 78.7 78.749 3 0.045364 27234 20211116_3435_TMUAki_TMT10x_P_F7 35.992 24.552 2103200 3379100 88892 3236900 2194200 4003100 2350600 2205200 2183200 2287200 2603500 1959000 3152500 258490 3323600 2113200 3990400 2370900 2335200 2243200 2230400 2498500 1 1 1 1 1 1 1 1 1 1 1 2103200 3379100 88892 3236900 2194200 4003100 2350600 2205200 2183200 2287200 2603500 1959000 3152500 258490 3323600 2113200 3990400 2370900 2335200 2243200 2230400 2498500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 132190000 132190000 0 2540 128 2379 14978 17979 17979 1 DDILNGSHPVSFDK Unmodified 1542.7314 0.7314363 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS 3.5 1.5 1 1 2 51.243 51.212 3 0.032297 15261 20211116_3433_TMUAki_TMT10x_P_F5 41.542 16.75 2475400 4384300 10812 4633600 5418900 7752100 3750900 4143200 4545900 4217600 4070100 2304900 4091900 256530 4756100 5154600 7623900 3916500 4396800 4573000 4116100 3941000 1 1 1 1 1 1 1 1 1 1 1 2475400 4384300 10812 4633600 5418900 7752100 3750900 4143200 4545900 4217600 4070100 2304900 4091900 256530 4756100 5154600 7623900 3916500 4396800 4573000 4116100 3941000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1658600000 1658600000 0 2541 3293 2380 14979;14980 17980 17980 1 DDKERPPFIPEGVVAR Unmodified 1823.953 0.95299681 2735 Q9BZE4;Q9BZE4-3;Q9BZE4-2 GTPBP4 Nucleolar GTP-binding protein 1 yes no 0 0 0 2 By MS/MS 5 0 1 1 46.972 47.136 4 0.00069814 12388 20211116_3444_TMUAki_TMT10x_S_F5 73.928 48.543 6042200 11414000 367600 9769300 6851500 7014400 5773900 11965000 11429000 10197000 10689000 5628600 10644000 854870 10041000 6564700 7427000 6088100 11862000 11353000 10031000 10334000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6042200 11414000 367600 9769300 6851500 7014400 5773900 11965000 11429000 10197000 10689000 5628600 10644000 854870 10041000 6564700 7427000 6088100 11862000 11353000 10031000 10334000 2 2 2 2 2 2 2 2 2 2 2 267560000 0 267560000 2542 2735 2381 14981 17981;17982 17981 2 DDLLGFALR Unmodified 1018.5447 0.54474515 3335 Q9Y617;Q9Y617-2 PSAT1 Phosphoserine aminotransferase yes no 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 72.85 72.842 2 3.4106E-05 25464 20211116_3430_TMUAki_TMT10x_P_F3 125.49 80.726 23737000 41051000 79909 40922000 31320000 41405000 35569000 26715000 24244000 32732000 34443000 22101000 38305000 2024800 41763000 30134000 41820000 35507000 28084000 25522000 31720000 32910000 6 6 4 6 6 6 6 6 6 6 6 9689300 15815000 15105 15999000 15164000 24392000 16271000 10973000 10373000 12746000 13659000 9021600 14758000 865520 16434000 14567000 24030000 16264000 11887000 10927000 12376000 13074000 3 3 2 3 3 3 3 3 3 3 3 14048000 25237000 64804 24923000 16156000 17012000 19298000 15742000 13872000 19986000 20784000 13080000 23547000 1159300 25329000 15567000 17790000 19243000 16197000 14595000 19345000 19836000 3 3 2 3 3 3 3 3 3 3 3 1982700000 1079000000 903680000 2543 3335 2382 14982;14983;14984;14985;14986 17983;17984;17985;17986;17987;17988;17989 17983 7 DDPHACYSTVFDK Unmodified 1553.6457 0.64565776 38 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS 4.29 1.03 2 2 2 1 3 4 45.886 45.951 3 1.412E-06 14250 20211116_3430_TMUAki_TMT10x_P_F3 114.74 99.866 + 40590000 59202000 269570 80846000 83226000 67424000 45855000 73699000 84709000 60937000 64991000 37794000 55323000 4028000 80746000 78866000 69656000 49669000 74233000 83777000 60040000 63305000 9 9 4 9 9 9 9 9 9 9 9 19137000 26241000 236230 35396000 66274000 52728000 31287000 34344000 39724000 27908000 29435000 17820000 24520000 2455800 35723000 62681000 52234000 33826000 35654000 39678000 27522000 28714000 4 4 3 4 4 4 4 4 4 4 4 21453000 32961000 33343 45449000 16952000 14696000 14568000 39355000 44985000 33029000 35556000 19974000 30803000 1572200 45024000 16185000 17422000 15843000 38580000 44099000 32518000 34591000 5 5 1 5 5 5 5 5 5 5 5 2188700000 1518500000 670230000 2544 38 2383 14987;14988;14989;14990;14991;14992;14993 17990;17991;17992;17993;17994;17995;17996;17997;17998 17991 9 DDPVTNLNNAFEVAEK Unmodified 1774.8374 0.83735793 235 O43707 ACTN4 Alpha-actinin-4 yes yes 0 0 0 0 By MS/MS 3 0 1 1 70.9 70.487 3 1.3258E-05 25492 20211116_3441_TMUAki_TMT10x_S_F3 86.455 72.776 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2545 235 2384 14994 17999 17999 1 DDVGKSVHELEK Unmodified 1354.6729 0.67285879 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 1 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 64.503 64.249 3 0.042018 21455 20211116_3429_TMUAki_TMT10x_P_F2 45.257 2.4683 23772000 39185000 198160 38348000 27745000 36891000 27142000 23588000 24435000 24932000 29530000 22135000 36561000 2187100 39158000 26598000 37373000 27479000 24694000 25158000 24294000 28329000 5 5 4 5 5 5 5 5 5 5 5 16183000 26360000 94604 25933000 19556000 30449000 19936000 15840000 15987000 16470000 19683000 15068000 24595000 1453000 26553000 18765000 30413000 20080000 16861000 16568000 16059000 18873000 3 3 2 3 3 3 3 3 3 3 3 7588800 12825000 103560 12415000 8188800 6441900 7206000 7748600 8447400 8461900 9846700 7066700 11966000 734080 12605000 7833300 6960300 7399200 7833700 8589100 8234900 9455400 2 2 2 2 2 2 2 2 2 2 2 3897500000 3023400000 874170000 2546 934 2385 14995;14996;14997;14998;14999 18000;18001;18002;18003 18001 4 DDVIQICGPADGIR Unmodified 1527.7351 0.73514147 1567 Q12800;Q12800-2;Q12800-3;Q12800-4 TFCP2 Alpha-globin transcription factor CP2 yes no 0 0 0 0 By MS/MS 2 0 1 1 56.317 56.067 2 0.018538 18063 20211116_3429_TMUAki_TMT10x_P_F2 62.162 12.829 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2547 1567 2386 15000 18004 18004 1 DEAQVCAIIER Unmodified 1302.6238 0.6238001 2588 Q99613;Q99613-2;B5ME19 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 0 0 0 0 By MS/MS 3 0 1 1 49.123 48.77 2 0.02863 16628 20211116_3441_TMUAki_TMT10x_S_F3 64.224 44.611 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2548 2588 2387 15001 18005 18005 1 DEATAAVIDLNDRPIGSR Unmodified 1911.965 0.96501806 2949 Q9NTZ6 RBM12 RNA-binding protein 12 yes yes 0 0 0 1 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 49.84 49.74 3 4.2583E-51 16990 20211116_3441_TMUAki_TMT10x_S_F3 236.16 211.31 2010600 3607500 6496.6 3816500 3070400 3839800 2502600 3313400 3184600 3110500 3140900 1872000 3366900 180700 3879000 2929700 3898500 2589300 3389300 3208400 3046200 3031300 2 2 1 2 2 2 2 2 2 2 2 969610 1758300 0 1741000 2146100 2794600 1582600 1626600 1609200 1445800 1602400 902750 1640600 89974 1793100 2043100 2755800 1635600 1707400 1635700 1419500 1546000 1 1 0 1 1 1 1 1 1 1 1 1041000 1849100 6496.6 2075500 924290 1045100 920020 1686800 1575500 1664700 1538600 969290 1726300 90724 2085900 886540 1142700 953730 1682000 1572800 1626800 1485300 1 1 1 1 1 1 1 1 1 1 1 705280000 129570000 575710000 2549 2949 2388 15002;15003;15004 18006;18007 18007 2 DEFEGLFK Unmodified 983.46001 0.46001246 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 67.522 67.287 2 0.0026237 23188 20211116_3430_TMUAki_TMT10x_P_F3 107.29 64.38 38633000 62108000 891320 65529000 45279000 60623000 45015000 48176000 45078000 46752000 49711000 35977000 57967000 4045800 66536000 43458000 61781000 45676000 49568000 46021000 45719000 47811000 6 6 5 6 6 6 6 6 6 6 6 20820000 32630000 587260 35082000 26831000 41906000 25610000 26919000 24686000 25738000 25554000 19389000 30456000 2276600 35719000 25726000 41933000 26013000 28090000 25185000 25186000 24624000 3 3 2 3 3 3 3 3 3 3 3 17814000 29479000 304060 30447000 18448000 18717000 19404000 21257000 20392000 21014000 24156000 16589000 27510000 1769100 30817000 17731000 19848000 19663000 21477000 20836000 20533000 23186000 3 3 3 3 3 3 3 3 3 3 3 1950800000 1022100000 928750000 2550 769 2389 15005;15006;15007;15008;15009;15010;15011;15012 18008;18009;18010;18011;18012;18013;18014;18015;18016 18010 9 DEFEGLFKQPAENVNQYLTDPK Unmodified 2581.2336 0.23364793 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 76.882 76.902 4 0.00053432 25692 20211116_3433_TMUAki_TMT10x_P_F5 62.611 51.468 10429000 18047000 209930 14435000 10766000 14129000 12125000 9037700 10285000 10351000 11467000 9712300 16826000 1065000 14976000 10370000 14298000 12171000 9485200 10586000 10055000 11026000 2 2 2 2 2 2 2 2 2 2 2 5244500 8859300 6395 7011800 3330300 8376300 5444200 4482500 5082600 5338600 5252800 4883200 8259700 413960 7304100 3246700 8361600 5400500 4779700 5192500 5178700 5061900 1 1 1 1 1 1 1 1 1 1 1 5184800 9187800 203540 7422900 7435900 5752700 6680900 4555100 5202200 5012700 6214700 4829100 8566600 651070 7672300 7123200 5936600 6770400 4705500 5393000 4876800 5963700 1 1 1 1 1 1 1 1 1 1 1 1436300000 1106500000 329850000 2551 769 2390 15013;15014;15015 18017;18018 18017 2 DEFTNTCPSDKEVEIAYSDVAK Unmodified 2517.1217 0.12171422 3342 Q9Y696 CLIC4 Chloride intracellular channel protein 4 yes yes 0 0 0 1 By MS/MS By MS/MS 2.29 0.7 1 3 3 3 4 62.973 62.652 3;4 2.8375E-35 22299 20211116_3441_TMUAki_TMT10x_S_F3 189.64 165.05 39907000 66247000 407790 66113000 43731000 55425000 52423000 31536000 32858000 36441000 46139000 37160000 61815000 3695800 67296000 42172000 56586000 52115000 33416000 34755000 35388000 44098000 11 11 8 11 11 11 11 11 11 11 11 22441000 36841000 193480 37648000 27307000 39143000 32617000 17637000 17573000 18948000 25519000 20896000 34380000 2099400 38372000 26328000 39301000 32342000 19056000 18818000 18452000 24371000 6 6 5 6 6 6 6 6 6 6 6 17466000 29406000 214310 28466000 16425000 16282000 19806000 13899000 15285000 17492000 20621000 16264000 27436000 1596400 28924000 15844000 17285000 19773000 14359000 15937000 16936000 19727000 5 5 3 5 5 5 5 5 5 5 5 7857600000 4058800000 3798800000 2552 3342 2391 15016;15017;15018;15019;15020;15021;15022 18019;18020;18021;18022;18023;18024;18025;18026;18027;18028;18029 18029 11 DEILPTTPISEQK Unmodified 1469.7613 0.76133944 783 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 0 By MS/MS 3.67 0.471 1 2 3 56.097 56.248 2;3 6.4244E-28 18627 20211116_3430_TMUAki_TMT10x_P_F3 209.21 156.63 9596600 15032000 195490 18040000 22726000 24833000 14638000 13021000 13924000 11489000 13525000 8936300 14038000 1088100 18293000 21594000 24614000 15248000 13789000 14183000 11284000 13060000 3 3 2 3 3 3 3 3 3 3 3 9596600 15032000 195490 18040000 22726000 24833000 14638000 13021000 13924000 11489000 13525000 8936300 14038000 1088100 18293000 21594000 24614000 15248000 13789000 14183000 11284000 13060000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1538000000 1538000000 0 2553 783 2392 15023;15024;15025 18030;18031;18032;18033 18030 4 DELHIVEAEAMNYEGSPIK Oxidation (M) 2160.0045 0.0044996155 524 P06748;P06748-3;P06748-2 NPM1 Nucleophosmin yes no 0 0 1 0 By MS/MS By MS/MS 2 1 3 3 1 1 3 5 66.145 65.935 3;4 1.3829E-17 22002 20211116_3429_TMUAki_TMT10x_P_F2 143.67 130.26 33103000 56107000 351020 51546000 35110000 54057000 39421000 36706000 39437000 40229000 42009000 30824000 52336000 2756200 52945000 33790000 54525000 39761000 38301000 40211000 39145000 40445000 11 11 5 11 11 11 11 11 11 11 11 18701000 33069000 90793 29627000 20236000 39212000 23529000 21390000 23381000 24175000 23122000 17412000 30844000 1334200 30611000 19489000 38955000 23689000 22730000 23783000 23496000 22313000 6 6 1 6 6 6 6 6 6 6 6 14402000 23038000 260220 21918000 14874000 14845000 15892000 15316000 16056000 16054000 18887000 13411000 21493000 1421900 22334000 14301000 15570000 16072000 15571000 16427000 15649000 18132000 5 5 4 5 5 5 5 5 5 5 5 6986600000 4208600000 2778100000 2554 524 2393 15026;15027;15028;15029;15030;15031;15032;15033 18034;18035;18036;18037;18038;18039;18040;18041;18042;18043;18044;18045 18037 438 12 DELHIVEAEAMNYEGSPIK Unmodified 2144.0096 0.0095849934 524 P06748;P06748-3;P06748-2 NPM1 Nucleophosmin yes no 0 0 0 0 By MS/MS By MS/MS 1.43 0.495 4 3 4 3 70.544 70.42 3;4 1.7436E-10 23948 20211116_3429_TMUAki_TMT10x_P_F2 109.42 91.282 33242000 53686000 138910 55752000 33278000 36259000 37823000 23545000 22178000 25850000 34879000 30951000 50102000 2607100 56439000 32013000 37855000 37643000 24649000 23697000 25151000 33253000 9 9 4 9 9 9 9 9 9 9 9 13757000 21114000 82498 21791000 12642000 18674000 15617000 8253500 7999800 9318400 12962000 12809000 19704000 1133700 22136000 12197000 18982000 15450000 8949300 8647800 9056900 12351000 3 3 1 3 3 3 3 3 3 3 3 19485000 32571000 56410 33960000 20636000 17585000 22205000 15291000 14178000 16531000 21917000 18142000 30398000 1473400 34302000 19816000 18873000 22193000 15700000 15050000 16094000 20903000 6 6 3 6 6 6 6 6 6 6 6 3580100000 1797100000 1782900000 2555 524 2393 15034;15035;15036;15037;15038;15039;15040 18046;18047;18048;18049;18050;18051;18052;18053;18054;18055 18049 10 DEMVREVDILDK Oxidation (M) 1476.713 0.71300904 3412 yes yes 0 0 1 1 By MS/MS By MS/MS 1.6 0.49 2 3 2 3 81.47 81.458 3 0.071782 28373 20211116_3429_TMUAki_TMT10x_P_F2 40.577 19.019 + 6501700 9790000 99297 9641200 6790000 8893600 7218900 4707900 4543600 5575200 7837300 6054500 9134500 635610 9834900 6527400 9012200 7217200 5023800 4856300 5409300 7458400 3 3 3 3 3 3 3 3 3 3 3 3592800 5099400 46936 5133000 3086800 5383200 3753400 2316500 2209300 2842100 4306800 3345600 4758500 334520 5237900 2979300 5399700 3724600 2525800 2389600 2754100 4089700 1 1 1 1 1 1 1 1 1 1 1 2908900 4690500 52361 4508200 3703200 3510400 3465500 2391300 2334300 2733100 3530500 2708900 4376100 301090 4597000 3548000 3612600 3492700 2498000 2466700 2655200 3368700 2 2 2 2 2 2 2 2 2 2 2 1473000000 579180000 893800000 2556 3412 2394 15041;15042;15043;15044;15045 18056;18057 18056 3330 2 DEPSVAAMVYPFTGDHK Oxidation (M) 1878.8458 0.84581413 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 1 0 By MS/MS By MS/MS 4.33 0.745 1 2 3 4 2 53.227 53.316 3 1.6989E-15 15902 20211116_3433_TMUAki_TMT10x_P_F5 147.12 132.19 13298000 22184000 139990 23388000 18443000 26325000 15732000 20334000 21434000 19588000 18295000 12383000 20705000 1276600 23818000 17623000 26503000 16276000 20954000 21444000 19162000 17745000 9 9 4 9 9 9 9 9 9 9 9 8897500 14597000 133110 15153000 14736000 22297000 12340000 13306000 13805000 12594000 11906000 8285300 13623000 924370 15526000 14077000 22072000 12688000 13961000 13912000 12330000 11544000 6 6 3 6 6 6 6 6 6 6 6 4400600 7586700 6873.9 8234600 3706700 4028400 3391500 7028100 7629200 6994000 6388900 4097400 7081600 352230 8292000 3546000 4430700 3587800 6993300 7532000 6832100 6201500 3 3 1 3 3 3 3 3 3 3 3 2344300000 1599500000 744760000 2557 1200 2395 15046;15047;15048;15049;15050;15051 18058;18059;18060;18061;18062;18063;18064;18065;18066;18067 18062 1602 10 DEPSVAAMVYPFTGDHK Unmodified 1862.8509 0.85089951 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 65.355 65.442 3 0.00024113 19787 20211116_3444_TMUAki_TMT10x_S_F5 67.685 56.071 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2558 1200 2395 15052;15053 18068;18069 18069 2 DETEFYLGKR Unmodified 1256.6037 0.60371659 714 P18077 RPL35A 60S ribosomal protein L35a yes yes 0 0 0 1 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 44.882 44.927 3 4.3966E-05 13867 20211116_3430_TMUAki_TMT10x_P_F3 127.42 96.238 19362000 29974000 171220 37909000 33146000 28161000 19465000 22979000 22520000 19771000 27356000 18029000 27998000 1902400 37967000 31445000 29173000 20554000 23529000 22949000 19442000 26240000 6 6 4 6 6 6 6 6 6 6 6 9547000 14042000 135040 18250000 26203000 20591000 11947000 11008000 11208000 9586200 13386000 8890200 13119000 1150600 18356000 24774000 20617000 12841000 11633000 11512000 9420900 12846000 3 3 3 3 3 3 3 3 3 3 3 9815300 15931000 36185 19658000 6942900 7570100 7517700 11971000 11312000 10185000 13970000 9138900 14879000 751730 19611000 6670200 8556400 7713000 11896000 11437000 10021000 13394000 3 3 1 3 3 3 3 3 3 3 3 2439800000 1346500000 1093300000 2559 714 2396 15054;15055;15056;15057;15058;15059 18070;18071;18072;18073;18074 18070 5 DETNYGIPQR Unmodified 1191.552 0.55201537 1405 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 0 0 By MS/MS 3 0 1 1 35.553 35.313 2 6.7145E-05 11160 20211116_3441_TMUAki_TMT10x_S_F3 129.38 100.3 283500 510520 5610.5 663970 268270 241640 288200 415360 479140 339190 542970 264000 476940 28519 660200 258070 276120 297200 411260 481360 334400 521810 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 283500 510520 5610.5 663970 268270 241640 288200 415360 479140 339190 542970 264000 476940 28519 660200 258070 276120 297200 411260 481360 334400 521810 1 1 1 1 1 1 1 1 1 1 1 18644000 0 18644000 2560 1405 2397 15060 18075 18075 1 DETVSDCSPHIANIGR Unmodified 1769.8003 0.80026092 1063 P47756-2;P47756 CAPZB F-actin-capping protein subunit beta yes no 0 0 0 0 By MS/MS 3 0 1 1 37.274 37.016 3 7.4404E-07 11810 20211116_3441_TMUAki_TMT10x_S_F3 101.39 83.469 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2561 1063 2398 15061 18076 18076 1 DEVQEVVYFSAADHEPESK Unmodified 2177.9753 0.97530798 1561 Q12765;Q12765-2 SCRN1 Secernin-1 yes no 0 0 0 0 By MS/MS 3 0 1 1 58.571 58.325 3 5.6147E-05 19471 20211116_3430_TMUAki_TMT10x_P_F3 76.533 68.579 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2562 1561 2399 15062 18077 18077 1 DFAAEVVHPGDLK Unmodified 1396.6987 0.69867961 1219 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 53.265 53.408 3 2.2476E-09 16193 20211116_3442_TMUAki_TMT10x_S_F4 130.07 89.492 20112000 31591000 175060 37713000 34169000 36191000 25634000 23178000 30533000 26269000 29377000 18726000 29501000 1935700 38018000 32553000 36671000 26599000 24315000 30807000 25528000 28375000 4 4 2 4 4 4 4 4 4 4 4 11513000 17705000 0 21279000 26827000 28681000 18284000 13235000 17568000 15195000 16416000 10719000 16534000 1077300 21566000 25502000 28415000 18971000 14295000 17863000 14759000 15872000 2 2 0 2 2 2 2 2 2 2 2 8598300 13885000 175060 16434000 7342000 7510200 7349400 9942800 12966000 11074000 12961000 8007100 12966000 858410 16452000 7050600 8256000 7628300 10020000 12944000 10769000 12503000 2 2 2 2 2 2 2 2 2 2 2 4538900000 2388100000 2150800000 2563 1219 2400 15063;15064;15065;15066;15067 18078;18079;18080;18081 18080 4 DFAIDIIK Unmodified 933.51713 0.51713341 1777 Q15181 PPA1 Inorganic pyrophosphatase yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 1.12 2 2 2 2 4 4 69.818 69.759 2 0.00050723 22443 20211116_3431_TMUAki_TMT10x_P_F4 139.19 81.627 62975000 93972000 368210 110670000 64718000 71706000 61787000 42677000 45578000 49158000 65353000 58638000 87748000 5473200 111140000 61995000 74800000 62325000 45050000 47779000 47743000 62431000 7 7 5 7 7 7 7 7 7 7 7 33393000 48428000 211060 56926000 37433000 49804000 32527000 23089000 24446000 25513000 34473000 31093000 45220000 2906400 57367000 35774000 50576000 33000000 24896000 25579000 24818000 32944000 4 4 2 4 4 4 4 4 4 4 4 29581000 45544000 157150 53740000 27284000 21902000 29260000 19588000 21133000 23644000 30880000 27544000 42528000 2566800 53769000 26221000 24224000 29325000 20154000 22201000 22925000 29487000 3 3 3 3 3 3 3 3 3 3 3 3871100000 1896100000 1975000000 2564 1777 2401 15068;15069;15070;15071;15072;15073;15074;15075 18082;18083;18084;18085;18086;18087;18088;18089 18083 8 DFASILTNASPLAVNLLEK Unmodified 2015.0939 0.09390697 1210 P53778;P53778-2 MAPK12 Mitogen-activated protein kinase 12 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 81.627 81.619 3 1.1605E-08 27142 20211116_3440_TMUAki_TMT10x_S_F2 112.74 90.94 2515600 4717800 37726 4707700 3090600 3640900 3521100 1983700 1838700 2351400 3478000 2342400 4402200 238170 4787400 2975700 3737600 3497000 2111500 2002300 2281400 3304400 2 2 1 2 2 2 2 2 2 2 2 1326900 2439300 0 2447800 1312700 2153500 1721500 845340 770370 991540 1613700 1235300 2276200 96209 2492200 1268100 2182600 1695400 929880 855270 962370 1530600 1 1 0 1 1 1 1 1 1 1 1 1188700 2278500 37726 2259900 1777900 1487300 1799600 1138300 1068300 1359900 1864300 1107100 2126000 141960 2295300 1707600 1555000 1801600 1181600 1147000 1319000 1773800 1 1 1 1 1 1 1 1 1 1 1 352850000 208070000 144770000 2565 1210 2402 15076;15077 18090;18091 18091 2 DFATVYVEAIK Unmodified 1254.6496 0.64960415 42 CON__P15497 yes yes 0 0 0 0 By MS/MS By MS/MS 4.75 0.433 1 3 2 2 71.561 71.6 2;3 4.7475E-15 23457 20211116_3433_TMUAki_TMT10x_P_F5 174.98 136.68 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2566 42 2403 15078;15079;15080;15081 18092;18093;18094;18095 18093 4 DFATVYVEAIKDSGR Unmodified 1669.8312 0.83115034 42 CON__P15497 yes yes 0 0 0 1 By MS/MS By matching 6.75 0.829 2 1 1 3 1 69.622 69.727 3 5.2377E-10 23523 20211116_3435_TMUAki_TMT10x_P_F7 136.34 120.95 + 13218000 23487000 44733 18593000 20530000 38200000 19070000 24125000 28053000 25036000 20235000 12307000 21897000 1164000 19607000 19646000 37390000 19698000 25266000 27869000 24414000 19762000 3 3 2 3 3 3 3 3 3 3 3 13218000 23487000 44733 18593000 20530000 38200000 19070000 24125000 28053000 25036000 20235000 12307000 21897000 1164000 19607000 19646000 37390000 19698000 25266000 27869000 24414000 19762000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1280200000 1042700000 237570000 2567 42 2404 15082;15083;15084;15085 18096;18097;18098;18099 18098 4 DFAYGETDPLIRK Unmodified 1523.762 0.76200815 1688 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes yes 0 0 0 1 By MS/MS By matching 4.5 0.5 1 1 1 1 53.47 53.642 3 0.00022395 15852 20211116_3431_TMUAki_TMT10x_P_F4 85.554 70.864 3699900 5738000 0 6487300 7137200 9342000 5288900 4898500 4925500 4730200 4872700 3444800 5357000 329840 6607900 6795400 9241100 5450100 5199700 5024900 4626700 4702200 1 1 0 1 1 1 1 1 1 1 1 3699900 5738000 0 6487300 7137200 9342000 5288900 4898500 4925500 4730200 4872700 3444800 5357000 329840 6607900 6795400 9241100 5450100 5199700 5024900 4626700 4702200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 653550000 342590000 310960000 2568 1688 2405 15086;15087 18100 18100 1 DFDFESANAQFNKEEIDREFHNK Unmodified 2829.2631 0.26305058 2237 Q8ND56;Q8ND56-3;Q8ND56-2 LSM14A Protein LSM14 homolog A yes no 0 0 0 2 By MS/MS By matching 6.5 1.12 1 1 1 1 3 1 61.394 61.623 5 1.1569E-56 19363 20211116_3433_TMUAki_TMT10x_P_F5 225.3 213.66 19162000 34014000 422140 30103000 26506000 46266000 26861000 27649000 26044000 27208000 26521000 17845000 31724000 2084900 31228000 25449000 45718000 27202000 29038000 26548000 26591000 25569000 3 3 3 3 3 3 3 3 3 3 3 19162000 34014000 422140 30103000 26506000 46266000 26861000 27649000 26044000 27208000 26521000 17845000 31724000 2084900 31228000 25449000 45718000 27202000 29038000 26548000 26591000 25569000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3194000000 2874000000 320050000 2569 2237 2406 15088;15089;15090;15091 18101;18102;18103 18101 3 DFDREVEIR Unmodified 1177.5728 0.57275081 1910 Q53HL2 CDCA8 Borealin yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 37.036 36.937 3 5.9719E-05 8519 20211116_3440_TMUAki_TMT10x_S_F2 139.43 108 936060 1378400 1178.3 1759200 2086600 1654400 1026200 1123600 1152700 880510 1122600 871490 1287700 85120 1766200 1973500 1680000 1100200 1161900 1166100 869960 1083800 2 2 1 2 2 2 2 2 2 2 2 747160 1110300 0 1428600 1928000 1494200 872960 939670 900710 705090 902860 695610 1037200 68786 1436000 1821500 1505700 941500 976360 915180 698290 870890 1 1 0 1 1 1 1 1 1 1 1 188900 268120 1178.3 330570 158560 160190 153210 183950 251990 175420 219700 175890 250420 16334 330280 151970 174230 158740 185570 250890 171680 212940 1 1 1 1 1 1 1 1 1 1 1 125410000 86609000 38804000 2570 1910 2407 15092;15093;15094;15095 18104;18105 18105 2 DFDTALK Unmodified 808.39668 0.39668393 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 47.426 47.364 2 0.0036931 14943 20211116_3430_TMUAki_TMT10x_P_F3 117.17 62.644 7290700 11348000 37437 12964000 10385000 8856100 8265200 9201500 9541100 7753800 10108000 6788600 10595000 682680 13050000 9906800 9283200 8534100 9294700 9670700 7632400 9732900 3 3 3 3 3 3 3 3 3 3 3 2081300 2956300 7165.7 3506500 4536800 4127900 2531400 2545300 2567700 2078500 2698400 1937900 2760600 213620 3547600 4300100 4131300 2673700 2653800 2615200 2049200 2599000 1 1 1 1 1 1 1 1 1 1 1 5209400 8391300 30271 9457200 5848400 4728300 5733800 6656200 6973400 5675200 7409200 4850700 7834000 469060 9501900 5606700 5151900 5860400 6640900 7055400 5583100 7133900 2 2 2 2 2 2 2 2 2 2 2 244070000 59525000 184540000 2571 897 2408 15096;15097;15098 18106;18107;18108 18106 3 DFEELKAEEVDVTK Unmodified 1650.7988 0.79884716 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.78 1.31 2 2 2 2 1 5 4 60.83 60.644 3 5.9491E-24 18372 20211116_3428_TMUAki_TMT10x_P_F1 195.15 134.94 102500000 159370000 1026100 201810000 113140000 112250000 85632000 68141000 89724000 80853000 113660000 95443000 148870000 9328700 201540000 107840000 118890000 88425000 71887000 91949000 78442000 108900000 11 11 8 11 11 11 11 11 11 11 11 46671000 70823000 586310 88793000 76643000 79709000 50240000 29730000 39385000 35694000 49306000 43460000 66153000 4835600 89179000 72860000 80640000 52005000 32928000 40894000 34615000 47257000 4 4 4 4 4 4 4 4 4 4 4 55829000 88549000 439790 113010000 36498000 32544000 35392000 38410000 50339000 45159000 64351000 51983000 82717000 4493200 112360000 34977000 38249000 36421000 38959000 51055000 43826000 61644000 7 7 4 7 7 7 7 7 7 7 7 9182400000 5468300000 3714100000 2572 1057 2409 15099;15100;15101;15102;15103;15104;15105;15106;15107 18109;18110;18111;18112;18113;18114;18115;18116;18117;18118;18119;18120 18109 12 DFEEYPEHR Unmodified 1220.5098 0.5098162 153 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 By MS/MS 1 0 1 1 32.83 32.84 3 0.02263 9068 20211116_3439_TMUAki_TMT10x_S_F1 53.517 37.927 208460 305960 1231.6 394590 230880 173600 229130 209960 250660 192640 292640 194110 285830 18745 392990 221410 191300 233180 211120 255550 188860 281000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 208460 305960 1231.6 394590 230880 173600 229130 209960 250660 192640 292640 194110 285830 18745 392990 221410 191300 233180 211120 255550 188860 281000 1 1 1 1 1 1 1 1 1 1 1 17591000 0 17591000 2573 153 2410 15108 18121 18121 1 DFEPILEQQIHQDDFGESK Unmodified 2274.0441 0.044056244 407 O95163 IKBKAP Elongator complex protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 68.514 68.325 3 1.0646E-08 23517 20211116_3439_TMUAki_TMT10x_S_F1 113.47 102.99 5402500 9762500 52564 9259900 6387600 5371600 5897400 5797800 5518200 6118100 6710600 5030300 9107600 465000 9423900 6112600 5721600 5995900 5882900 5672800 5962100 6436600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5402500 9762500 52564 9259900 6387600 5371600 5897400 5797800 5518200 6118100 6710600 5030300 9107600 465000 9423900 6112600 5721600 5995900 5882900 5672800 5962100 6436600 2 2 1 2 2 2 2 2 2 2 2 358440000 0 358440000 2574 407 2411 15109;15110 18122;18123;18124 18124 3 DFEPQPGNMSHPRPWLGLDHFNK Oxidation (M) 2734.2711 0.27105326 2387 Q93009;Q93009-3 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes no 0 0 1 1 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 51.719 51.973 5 5.3394E-11 16601 20211116_3446_TMUAki_TMT10x_S_F7 109.05 99.573 20377000 36129000 577610 36441000 27120000 36128000 24644000 25184000 22515000 25913000 27227000 18977000 33713000 2247600 37149000 25972000 36578000 25061000 26180000 23165000 25278000 26119000 7 7 6 7 7 7 7 7 7 7 7 10046000 18837000 451360 17766000 16937000 27079000 15089000 13835000 12029000 13955000 14242000 9356800 17573000 1350000 18339000 16221000 26715000 15308000 14739000 12450000 13624000 13670000 3 3 3 3 3 3 3 3 3 3 3 10331000 17292000 126250 18675000 10183000 9048300 9554500 11349000 10486000 11958000 12985000 9619900 16141000 897580 18810000 9751000 9863300 9753300 11441000 10716000 11654000 12449000 4 4 3 4 4 4 4 4 4 4 4 2948200000 1667900000 1280300000 2575 2387 2412 15111;15112;15113;15114;15115 18125;18126;18127;18128;18129;18130;18131 18128 2722 7 DFFHGLR Unmodified 890.43989 0.43988615 2949 Q9NTZ6 RBM12 RNA-binding protein 12 yes yes 0 0 0 0 By MS/MS 7 0 1 1 43.775 44.324 3 0.0010673 13495 20211116_3446_TMUAki_TMT10x_S_F7 121.29 81.291 281120 426360 5203.7 515260 161110 280140 306130 327380 485820 422000 386260 261790 398170 26476 515850 158440 300950 308500 333310 482850 408250 375690 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 281120 426360 5203.7 515260 161110 280140 306130 327380 485820 422000 386260 261790 398170 26476 515850 158440 300950 308500 333310 482850 408250 375690 1 1 1 1 1 1 1 1 1 1 1 52947000 0 52947000 2576 2949 2413 15116 18132 18132 1 DFFQSYGNVVELR Unmodified 1572.7573 0.75725712 1616 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.69 1.1 3 4 4 5 9 7 72.726 72.788 2;3 1.2555E-53 22813 20211116_3444_TMUAki_TMT10x_S_F5 307.95 230.21 95669000 164850000 36843 144460000 107650000 138600000 111860000 83724000 89064000 94056000 113020000 89069000 153750000 6215200 148730000 103250000 140320000 112540000 88203000 92454000 91434000 108280000 21 21 5 21 21 21 21 21 21 21 21 49766000 84187000 15445 72941000 47978000 86818000 56916000 43219000 47020000 48230000 56249000 46332000 78513000 2581400 75413000 46182000 86609000 56959000 46292000 48595000 46897000 53976000 9 9 2 9 9 9 9 9 9 9 9 45903000 80662000 21398 71519000 59668000 51778000 54944000 40505000 42044000 45826000 56768000 42737000 75232000 3633800 73312000 57070000 53713000 55580000 41911000 43859000 44537000 54306000 12 12 3 12 12 12 12 12 12 12 12 20562000000 10370000000 10193000000 2577 1616 2414 15117;15118;15119;15120;15121;15122;15123;15124;15125;15126;15127;15128;15129;15130;15131;15132 18133;18134;18135;18136;18137;18138;18139;18140;18141;18142;18143;18144;18145;18146;18147;18148;18149;18150;18151;18152;18153;18154;18155 18146 23 DFGEEHPFYDR Unmodified 1410.584 0.58404378 1963 Q68CQ4 DIEXF Digestive organ expansion factor homolog yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 42.193 42.062 3 0.0033379 12598 20211116_3430_TMUAki_TMT10x_P_F3 64.441 55.483 4011400 5931300 361620 5620200 5228800 4923700 5247900 6932000 5730100 4999900 6388200 3737700 5533400 686650 5745100 5036000 5104000 5337100 6888800 5831700 4962800 6142100 2 2 2 2 2 2 2 2 2 2 2 826440 958430 55419 1023700 1483500 1266400 945100 1095800 906570 774870 1370900 769910 894560 129370 1043400 1412300 1271300 985610 1113200 940440 770000 1308100 1 1 1 1 1 1 1 1 1 1 1 3185000 4972900 306210 4596500 3745300 3657300 4302800 5836200 4823600 4225100 5017400 2967800 4638800 557280 4701700 3623700 3832700 4351500 5775700 4891200 4192800 4834100 1 1 1 1 1 1 1 1 1 1 1 133910000 53236000 80672000 2578 1963 2415 15133;15134 18156;18157 18156 2 DFHILFVPR Unmodified 1142.6237 0.62366417 2412 Q96AX1 VPS33A Vacuolar protein sorting-associated protein 33A yes yes 0 0 0 0 By MS/MS 1 0 1 1 61.754 61.478 3 1.0577E-05 20759 20211116_3439_TMUAki_TMT10x_S_F1 107.57 78.488 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2579 2412 2416 15135 18158 18158 1 DFHVDEQTTVK Unmodified 1317.6201 0.62009493 45 CON__P34955 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.745 1 2 3 3 3 36.107 36.122 3 2.821E-11 12599 20211116_3441_TMUAki_TMT10x_S_F3 163.12 144.37 + 3423400 4777300 48707 5625200 5031900 4842600 4060200 5504000 6857700 5217300 5193100 3187900 4460900 351740 5667000 4803300 4996500 4255800 5554100 6795000 5107300 5061200 7 7 7 7 7 7 7 7 7 7 7 1598300 2039900 19674 2370400 3289900 3382800 2272400 2378300 3113100 2367300 2237800 1488300 1904600 174540 2410000 3130100 3361100 2384200 2468500 3099200 2312500 2185800 3 3 3 3 3 3 3 3 3 3 3 1825100 2737500 29032 3254800 1742000 1459900 1787800 3125700 3744600 2850000 2955300 1699500 2556300 177200 3257100 1673200 1635400 1871600 3085700 3695800 2794800 2875300 4 4 4 4 4 4 4 4 4 4 4 333410000 216340000 117060000 2580 45 2417 15136;15137;15138;15139;15140;15141 18159;18160;18161;18162;18163;18164;18165;18166 18164 8 DFHVDEQTTVKVPMMNR 2 Oxidation (M) 2077.9561 0.95610963 45 CON__P34955 yes yes 0 0 2 1 By MS/MS 5 0 1 1 39.456 39.588 4 0.0072687 9482 20211116_3444_TMUAki_TMT10x_S_F5 53.255 43.781 + 631420 1011800 0 1140500 640170 608510 528730 1915500 2167600 1456900 1230700 587910 944570 51570 1146400 610960 682090 592880 1867900 2100200 1441800 1216200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 631420 1011800 0 1140500 640170 608510 528730 1915500 2167600 1456900 1230700 587910 944570 51570 1146400 610960 682090 592880 1867900 2100200 1441800 1216200 1 1 0 1 1 1 1 1 1 1 1 248150000 0 248150000 2581 45 2418 15142 18167 18167 20;21 1 DFIDLTLSK Unmodified 1050.5597 0.55972651 2735 Q9BZE4 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.8 0.748 2 2 1 3 2 74.165 74.174 2 3.4178E-06 24787 20211116_3442_TMUAki_TMT10x_S_F4 163.32 109.16 17828000 31918000 111840 29142000 24316000 37180000 23204000 26150000 25283000 25229000 25683000 16599000 29773000 1511800 30046000 23284000 37133000 23660000 27117000 25644000 24678000 24763000 4 4 2 4 4 4 4 4 4 4 4 13151000 23146000 4231.9 21081000 17368000 31699000 18287000 18998000 18868000 18516000 19000000 12244000 21590000 992000 21811000 16666000 31352000 18519000 19942000 19174000 18104000 18324000 3 3 1 3 3 3 3 3 3 3 3 4676500 8772200 107610 8061200 6948800 5481300 4917400 7152100 6414700 6712700 6683000 4355100 8182700 519830 8235400 6618300 5780600 5140500 7174300 6469800 6574100 6438600 1 1 1 1 1 1 1 1 1 1 1 1285700000 920440000 365230000 2582 2735 2419 15143;15144;15145;15146;15147 18168;18169;18170;18171;18172 18171 5 DFIDSLGLLHEQNMAK Unmodified 1829.8982 0.89818405 2056 Q7L2H7;Q7L2H7-2 EIF3M Eukaryotic translation initiation factor 3 subunit M yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.943 1 2 1 2 73.224 73.378 3 2.7374E-10 23109 20211116_3444_TMUAki_TMT10x_S_F5 120.21 104.34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2583 2056 2420 15148;15149;15150 18173;18174;18175 18174 3 DFIIFEAAPQETR Unmodified 1535.762 0.76200815 1273 P60510 PPP4C Serine/threonine-protein phosphatase 4 catalytic subunit yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.943 2 1 1 2 70.838 70.633 2 3.7748E-09 23994 20211116_3429_TMUAki_TMT10x_P_F2 134.2 99.663 11503000 21779000 38833 17169000 16155000 23280000 15964000 18641000 16317000 17352000 17037000 10709000 20305000 875000 17932000 15476000 23235000 16214000 19148000 16610000 17000000 16412000 4 4 1 4 4 4 4 4 4 4 4 6143600 11737000 0 8391700 7835800 16158000 9468200 10971000 9387700 10345000 9302000 5719100 10939000 388550 8913300 7545000 15865000 9516200 11398000 9550800 10130000 8975900 2 2 0 2 2 2 2 2 2 2 2 5359300 10043000 38833 8776900 8319000 7121700 6495700 7669500 6929400 7006300 7734800 4990000 9366200 486440 9018500 7930900 7369500 6697600 7750400 7059100 6870000 7436500 2 2 1 2 2 2 2 2 2 2 2 932990000 257940000 675050000 2584 1273 2421 15151;15152;15153 18176;18177;18178;18179 18176 4 DFILPISDVR Unmodified 1173.6394 0.63937381 2018 Q6UB35 MTHFD1L Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 70.49 70.532 2 0.0014889 22824 20211116_3431_TMUAki_TMT10x_P_F4 88.948 54.14 13026000 20856000 225530 20247000 15760000 24693000 17197000 16653000 16741000 17014000 17415000 12130000 19459000 1328400 20765000 15161000 24701000 17354000 17348000 17075000 16602000 16779000 3 3 3 3 3 3 3 3 3 3 3 8188900 12248000 125130 12532000 9415200 18170000 11204000 9815800 10178000 10491000 10527000 7625600 11430000 812710 12849000 9080200 17975000 11239000 10422000 10411000 10219000 10144000 2 2 2 2 2 2 2 2 2 2 2 4836900 8608200 100400 7714400 6344900 6523100 5993100 6837200 6564000 6522300 6887900 4504400 8029100 515700 7915300 6081000 6725800 6115200 6926300 6664200 6383000 6634400 1 1 1 1 1 1 1 1 1 1 1 895150000 451270000 443880000 2585 2018 2422 15154;15155 18180;18181;18182 18181 3 DFINFISDK Unmodified 1097.5393 0.53932542 2799 Q9H3N1 TMX1 Thioredoxin-related transmembrane protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 74.629 74.726 2 3.2581E-05 23607 20211116_3434_TMUAki_TMT10x_P_F6 118.03 85.092 36570000 61339000 265180 57978000 42916000 53890000 44331000 34212000 35011000 37109000 46600000 34052000 57224000 3315900 59324000 41198000 54710000 44604000 35864000 36436000 36123000 44595000 6 6 4 6 6 6 6 6 6 6 6 18358000 30196000 128950 27672000 20072000 33492000 22226000 17359000 17749000 19091000 23017000 17094000 28166000 1657200 28495000 19308000 33398000 22294000 18515000 18440000 18574000 22040000 3 3 2 3 3 3 3 3 3 3 3 18212000 31144000 136230 30307000 22844000 20398000 22104000 16853000 17261000 18018000 23584000 16957000 29057000 1658700 30829000 21891000 21311000 22310000 17349000 17997000 17549000 22555000 3 3 2 3 3 3 3 3 3 3 3 1593500000 597990000 995530000 2586 2799 2423 15156;15157;15158;15159;15160;15161 18183;18184;18185;18186;18187;18188;18189;18190;18191 18184 9 DFKPGDLIFAK Unmodified 1249.6707 0.67067394 336 O75475;O75475-2;O75475-3 PSIP1 PC4 and SFRS1-interacting protein yes no 0 0 0 1 By MS/MS By MS/MS 6.12 2.15 1 1 1 3 2 6 2 65.538 65.767 2;3 6.0506E-06 21664 20211116_3435_TMUAki_TMT10x_P_F7 116.51 74.97 117780000 180490000 1260900 192260000 150500000 201110000 143460000 149670000 151140000 150120000 154090000 109680000 168460000 11084000 195440000 144190000 203170000 146120000 154780000 153530000 146600000 148550000 9 9 5 9 9 9 9 9 9 9 9 72063000 106420000 487100 114040000 96671000 151830000 90594000 86872000 92367000 90142000 91465000 67099000 99330000 6458200 116360000 92549000 150880000 92266000 91702000 93858000 87903000 88261000 7 7 3 7 7 7 7 7 7 7 7 45722000 74066000 773840 78223000 53832000 49278000 52867000 62795000 58774000 59978000 62626000 42577000 69127000 4625400 79074000 51639000 52291000 53858000 63079000 59670000 58694000 60294000 2 2 2 2 2 2 2 2 2 2 2 11939000000 7757600000 4181500000 2587 336 2424 15162;15163;15164;15165;15166;15167;15168;15169 18192;18193;18194;18195;18196;18197;18198;18199;18200 18196 9 DFLAGGIAAAISK Unmodified 1232.6765 0.6764876 639 P12236 SLC25A6 ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 4.86 3.09 4 2 4 4 6 8 76.825 76.837 2;3 1.4094E-22 25123 20211116_3436_TMUAki_TMT10x_P_F8 208.72 148.92 94413000 163670000 501500 140930000 110080000 155830000 111940000 114050000 110320000 111020000 120500000 87908000 152630000 8054000 145600000 105590000 156890000 113390000 117980000 112660000 108550000 115930000 14 14 9 14 14 14 14 14 14 14 14 57108000 95770000 302710 82873000 62818000 113960000 68722000 68332000 65739000 66075000 72829000 53173000 89315000 4754400 85920000 60377000 113150000 69307000 71710000 67260000 64625000 70036000 8 8 5 8 8 8 8 8 8 8 8 37305000 67898000 198790 58058000 47260000 41867000 43214000 45722000 44577000 44947000 47674000 34735000 63319000 3299700 59681000 45218000 43736000 44088000 46269000 45400000 43930000 45893000 6 6 4 6 6 6 6 6 6 6 6 10578000000 6053200000 4524500000 2588 639 2425 15170;15171;15172;15173;15174;15175;15176;15177;15178;15179;15180;15181;15182;15183 18201;18202;18203;18204;18205;18206;18207;18208;18209;18210;18211;18212;18213;18214;18215;18216 18206 16 DFLAGGVAAAISK Unmodified 1218.6608 0.66083754 502 P05141 SLC25A5 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 3.09 4 4 4 6 6 70.266 70.354 2;3 3.5486E-19 23712 20211116_3435_TMUAki_TMT10x_P_F7 192.68 140.83 113290000 190360000 340500 169620000 138040000 193290000 137390000 135740000 128080000 129020000 137450000 105480000 177550000 9376900 174860000 132320000 194160000 139110000 140710000 131040000 126280000 132300000 15 15 8 15 15 15 15 15 15 15 15 76516000 126450000 188770 112580000 89626000 154000000 98316000 92353000 85516000 87134000 91289000 71241000 117940000 6104000 116450000 86128000 152950000 98876000 96853000 87763000 85315000 87884000 9 9 4 9 9 9 9 9 9 9 9 36777000 63910000 151730 57033000 48417000 39291000 39073000 43383000 42563000 41883000 46160000 34244000 59609000 3272900 58404000 46194000 41214000 40230000 43857000 43275000 40967000 44418000 6 6 4 6 6 6 6 6 6 6 6 16952000000 9250500000 7701400000 2589 502 2426 15184;15185;15186;15187;15188;15189;15190;15191;15192;15193;15194;15195 18217;18218;18219;18220;18221;18222;18223;18224;18225;18226;18227;18228;18229;18230;18231;18232 18221 16 DFLAGGVAAAVSK Unmodified 1204.6452 0.64518747 638 P12235 SLC25A4 ADP/ATP translocase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 64.328 64.971 2;3 2.1008E-14 21399 20211116_3435_TMUAki_TMT10x_P_F7 168.02 119.22 16571000 30276000 117590 25554000 20006000 35276000 20023000 19883000 21550000 22058000 20687000 15429000 28233000 1438300 26549000 19184000 34992000 20357000 21058000 21826000 21454000 19982000 3 3 1 3 3 3 3 3 3 3 3 16571000 30276000 117590 25554000 20006000 35276000 20023000 19883000 21550000 22058000 20687000 15429000 28233000 1438300 26549000 19184000 34992000 20357000 21058000 21826000 21454000 19982000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 943020000 943020000 0 2590 638 2427 15196;15197;15198 18233;18234;18235;18236;18237 18233 5 DFLIPIGK Unmodified 901.5273 0.52730417 619 P11177;P11177-2;P11177-3 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 71.054 71.288 2 0.0022247 24593 20211116_3446_TMUAki_TMT10x_S_F7 112.17 43.256 29276000 45395000 93934 46672000 31352000 41472000 30332000 25597000 25348000 25438000 33451000 27258000 42363000 2422200 47445000 30034000 42213000 30666000 26822000 26293000 24850000 32018000 3 3 1 3 3 3 3 3 3 3 3 18870000 29626000 0 29028000 19306000 29978000 19203000 16629000 16358000 16932000 21073000 17568000 27642000 1448900 29670000 18501000 30181000 19396000 17590000 16933000 16524000 20182000 2 2 0 2 2 2 2 2 2 2 2 10406000 15768000 93934 17644000 12046000 11494000 11129000 8968000 8990100 8505900 12378000 9689700 14721000 973240 17775000 11533000 12032000 11270000 9231700 9359700 8326400 11836000 1 1 1 1 1 1 1 1 1 1 1 1957100000 1110400000 846660000 2591 619 2428 15199;15200;15201 18238;18239;18240 18240 3 DFLLKPELLR Unmodified 1242.7336 0.73360855 1665;63 O00148;O00148-2;O00148-3;Q13838;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B no no 0 0 0 1 By MS/MS By MS/MS 5.75 2.65 2 1 2 3 4 6 6 65.796 65.905 2;3 1.6958E-06 19978 20211116_3447_TMUAki_TMT10x_S_F8 147.62 81.002 75163000 123070000 269620 118930000 79757000 143280000 86373000 102880000 109640000 115910000 98933000 69984000 114820000 6249700 121980000 76638000 143560000 87986000 107030000 110140000 112660000 95768000 11 11 6 11 11 11 11 11 11 11 11 39466000 63833000 214690 60612000 52777000 92344000 40686000 53760000 57548000 60685000 50567000 36747000 59550000 3535700 62536000 50306000 91250000 42423000 56814000 57560000 58983000 48997000 6 6 3 6 6 6 6 6 6 6 6 35697000 59236000 54931 58314000 26980000 50938000 45688000 49121000 52089000 55223000 48366000 33237000 55270000 2714000 59445000 26332000 52306000 45563000 50217000 52580000 53682000 46772000 5 5 3 5 5 5 5 5 5 5 5 23836000000 13660000000 10175000000 2592 63;1665 2429 15202;15203;15204;15205;15206;15207;15208;15209;15210;15211;15212;15213 18241;18242;18243;18244;18245;18246;18247;18248;18249;18250;18251 18250 11 DFLLQQTMLR Oxidation (M) 1279.6595 0.65945733 1513 Q04760;Q04760-2 GLO1 Lactoylglutathione lyase yes no 0 0 1 0 By MS/MS By MS/MS 7 0 2 1 1 58.315 58.939 2 0.050406 18897 20211116_3435_TMUAki_TMT10x_P_F7 58.676 27.304 10889000 18096000 174760 17511000 12413000 17737000 12093000 13905000 14363000 13438000 15416000 10140000 16883000 1087000 17909000 11904000 17969000 12353000 14317000 14550000 13143000 14839000 2 2 2 2 2 2 2 2 2 2 2 6061500 9499800 58156 8912800 7896800 12599000 7168400 7186100 7800200 7143200 8410500 5644300 8862100 582440 9189100 7557000 12486000 7328800 7578300 7929400 6978200 8094400 1 1 1 1 1 1 1 1 1 1 1 4827100 8596400 116610 8598400 4516000 5137900 4924700 6719000 6563000 6294400 7005500 4495400 8021300 504510 8719900 4347500 5483100 5024600 6738900 6620800 6164900 6744200 1 1 1 1 1 1 1 1 1 1 1 1117200000 602720000 514490000 2593 1513 2430 15214;15215 18252;18253 18252 2051 2 DFLLTAR Unmodified 834.45995 0.45995289 1401 P63173 RPL38 60S ribosomal protein L38 yes yes 0 0 0 0 By MS/MS By MS/MS 5.71 1.03 1 2 2 2 4 3 51.325 51.603 2 0.0041712 16560 20211116_3446_TMUAki_TMT10x_S_F7 114.78 71.659 68074000 100980000 153060 137690000 105480000 101190000 68257000 74102000 84819000 73930000 87944000 63381000 94358000 5773200 137330000 100170000 104730000 71695000 76703000 85675000 72211000 84740000 8 8 4 8 8 8 8 8 8 8 8 34173000 50956000 18344 68882000 78883000 75883000 39523000 39028000 44350000 37855000 44522000 31816000 47615000 3133200 69110000 74626000 76044000 42298000 41505000 44913000 37019000 42943000 4 4 1 4 4 4 4 4 4 4 4 33901000 50019000 134710 68811000 26593000 25304000 28733000 35074000 40469000 36075000 43423000 31565000 46743000 2640000 68220000 25548000 28681000 29397000 35198000 40762000 35192000 41797000 4 4 3 4 4 4 4 4 4 4 4 4185200000 2306200000 1879000000 2594 1401 2431 15216;15217;15218;15219;15220;15221;15222 18254;18255;18256;18257;18258;18259;18260;18261 18261 8 DFLSCRPTEIPENDILLCESR Unmodified 2563.2047 0.20467276 2103 Q86U86;Q86U86-8;Q86U86-5;Q86U86-4;Q86U86-7;Q86U86-3;Q86U86-9;Q86U86-2 PBRM1 Protein polybromo-1 yes no 0 0 0 1 By MS/MS 2 0 1 1 68.203 68.001 3 0.085131 21651 20211116_3440_TMUAki_TMT10x_S_F2 35.94 23.795 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2595 2103 2432 15223 18262 18262 1 DFLTHVSAR Unmodified 1044.5352 0.53524309 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 0 By MS/MS 2 0 1 1 36.853 36.952 3 0.0042088 8929 20211116_3440_TMUAki_TMT10x_S_F2 67.704 49.392 191480 278690 0 331090 179830 156640 203340 153560 159500 162390 228370 178280 260240 14875 331460 172970 170270 203670 156550 166630 158240 218170 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 191480 278690 0 331090 179830 156640 203340 153560 159500 162390 228370 178280 260240 14875 331460 172970 170270 203670 156550 166630 158240 218170 1 1 0 1 1 1 1 1 1 1 1 6752400 0 6752400 2596 157 2433 15224 18263 18263 1 DFMIQGGDFTR Oxidation (M) 1301.571 0.57103625 779 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 1 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 52.544 52.561 2 9.6754E-06 15315 20211116_3431_TMUAki_TMT10x_P_F4 119.53 89.274 21513000 35918000 34967 38515000 31020000 37075000 23399000 24765000 27065000 24408000 28525000 20028000 33525000 1654600 39086000 29534000 37581000 24246000 25789000 27425000 23853000 27472000 7 7 3 7 7 7 7 7 7 7 7 12878000 20111000 13244 22201000 22794000 28730000 15957000 14444000 15775000 14180000 16230000 11988000 18773000 934070 22598000 21667000 28544000 16538000 15399000 16073000 13860000 15642000 4 4 1 4 4 4 4 4 4 4 4 8634900 15808000 21723 16314000 8225100 8344700 7441800 10321000 11290000 10228000 12295000 8040000 14752000 720500 16488000 7867600 9036900 7708600 10391000 11353000 9993100 11830000 3 3 2 3 3 3 3 3 3 3 3 3488800000 1968600000 1520200000 2597 779 2434 15225;15226;15227;15228;15229;15230 18264;18265;18266;18267;18268;18269;18270 18267 917 7 DFMIQGGDFTR Unmodified 1285.5761 0.57612163 779 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 58.778 58.765 2 1.2972E-19 17105 20211116_3444_TMUAki_TMT10x_S_F5 236.77 200.24 28532000 47613000 284110 53643000 31792000 31013000 30834000 18180000 15715000 18892000 31869000 26568000 44451000 2614300 53961000 30473000 32701000 30858000 19153000 17222000 18422000 30243000 5 5 4 5 5 5 5 5 5 5 5 12680000 20748000 26903 23145000 17367000 19543000 16099000 7772000 7025500 8257300 13767000 11806000 19369000 1080300 23388000 16618000 19867000 16116000 8510600 7783500 8044500 13071000 2 2 1 2 2 2 2 2 2 2 2 15852000 26866000 257200 30498000 14425000 11470000 14734000 10408000 8689800 10635000 18103000 14762000 25082000 1534000 30572000 13855000 12834000 14742000 10642000 9438900 10377000 17172000 3 3 3 3 3 3 3 3 3 3 3 3187200000 1342600000 1844700000 2598 779 2434 15231;15232;15233;15234;15235;15236 18271;18272;18273;18274;18275;18276 18276 6 DFMIQGGDFTRGDGTGGK Oxidation (M) 1873.8265 0.82647567 779 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 1 1 By MS/MS By MS/MS 4.57 0.904 1 2 3 1 3 4 48.982 49.104 3 3.3327E-10 13145 20211116_3444_TMUAki_TMT10x_S_F5 111.77 94.83 16663000 26783000 263050 32175000 27409000 29106000 16741000 25088000 28018000 19642000 24072000 15516000 25012000 1735900 32397000 26026000 29750000 17888000 25548000 27870000 19407000 23344000 7 7 3 7 7 7 7 7 7 7 7 9229600 14578000 160270 17707000 20412000 23780000 12240000 13876000 15227000 10949000 12970000 8594700 13614000 1054500 17933000 19375000 23628000 12935000 14521000 15280000 10814000 12582000 4 4 1 4 4 4 4 4 4 4 4 7433200 12205000 102790 14468000 6997200 5326300 4501400 11212000 12791000 8692400 11102000 6921600 11397000 681400 14464000 6651100 6122300 4953100 11027000 12590000 8593200 10762000 3 3 2 3 3 3 3 3 3 3 3 2297500000 1447000000 850540000 2599 779 2435 15237;15238;15239;15240;15241;15242;15243 18277;18278;18279;18280;18281;18282;18283;18284;18285 18284 917 9 DFMIQGGDFTRGDGTGGK Unmodified 1857.8316 0.83156105 779 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 0 1 By MS/MS By MS/MS 5.6 0.49 2 3 3 2 53.747 53.909 3 8.1069E-16 15022 20211116_3434_TMUAki_TMT10x_P_F6 141.6 115.06 19029000 29823000 135840 38323000 25773000 19288000 17265000 11168000 10148000 11635000 21586000 17718000 27860000 1712800 38211000 24501000 20641000 17737000 11779000 11041000 11344000 20469000 4 4 2 4 4 4 4 4 4 4 4 7892100 12317000 135840 15506000 14173000 13271000 10076000 5633000 4885900 5700200 9758300 7349300 11505000 868880 15560000 13495000 13486000 10274000 6114800 5370600 5564300 9262600 2 2 2 2 2 2 2 2 2 2 2 11137000 17506000 0 22817000 11600000 6016700 7189100 5534900 5261900 5934400 11828000 10369000 16355000 843940 22651000 11006000 7154900 7463200 5663800 5670400 5779400 11206000 2 2 0 2 2 2 2 2 2 2 2 1344200000 456420000 887790000 2600 779 2435 15244;15245;15246;15247;15248 18286;18287;18288;18289;18290;18291 18288 6 DFMIQGGDPTGTGR Oxidation (M) 1466.646 0.64599211 3273 Q9Y3C6 PPIL1 Peptidyl-prolyl cis-trans isomerase-like 1 yes yes 0 0 1 0 By MS/MS By matching 3 0 2 1 1 43.285 43.145 2 0.00042394 13011 20211116_3430_TMUAki_TMT10x_P_F3 86.923 65.178 265020 394220 9179.9 484570 625250 592290 355080 289770 361940 265720 369600 246830 368190 35573 489570 593280 589950 374510 309160 368180 260510 356300 1 1 1 1 1 1 1 1 1 1 1 265020 394220 9179.9 484570 625250 592290 355080 289770 361940 265720 369600 246830 368190 35573 489570 593280 589950 374510 309160 368180 260510 356300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 51287000 37123000 14164000 2601 3273 2436 15249;15250 18292 18292 3245 1 DFNHINVELSLLGK Unmodified 1597.8464 0.84640648 904 P32969 RPL9 60S ribosomal protein L9 yes yes 0 0 0 0 By MS/MS By MS/MS 6 0.894 2 1 2 2 3 72.242 72.406 3 5.5954E-14 22794 20211116_3444_TMUAki_TMT10x_S_F5 130.27 116.36 27819000 45906000 477450 41084000 28482000 49000000 32523000 28972000 29097000 29882000 31583000 25905000 42818000 2610200 42371000 27431000 48980000 32672000 30495000 29839000 29147000 30390000 4 4 2 4 4 4 4 4 4 4 4 20340000 32669000 171870 28670000 18971000 39061000 22371000 21231000 20717000 21441000 22821000 18939000 30469000 1676900 29686000 18277000 38751000 22463000 22492000 21223000 20932000 21949000 3 3 1 3 3 3 3 3 3 3 3 7478800 13237000 305580 12414000 9510800 9939700 10152000 7741500 8379900 8440300 8762000 6965800 12349000 933300 12685000 9154000 10229000 10209000 8002900 8616200 8214400 8440600 1 1 1 1 1 1 1 1 1 1 1 2053100000 1050200000 1002900000 2602 904 2437 15251;15252;15253;15254;15255 18293;18294;18295;18296;18297;18298 18296 6 DFNHINVELSLLGKK Unmodified 1725.9414 0.94136949 904 P32969 RPL9 60S ribosomal protein L9 yes yes 0 0 0 1 By MS/MS 1 0 1 1 65.189 64.951 4 0.00066655 22159 20211116_3439_TMUAki_TMT10x_S_F1 72.634 61.728 4295500 6829600 90427 6609900 4667500 3920100 4446700 4350800 4055900 4488700 4532100 4000200 6371900 445610 6718500 4475300 4169100 4509900 4406000 4160200 4378200 4357300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4295500 6829600 90427 6609900 4667500 3920100 4446700 4350800 4055900 4488700 4532100 4000200 6371900 445610 6718500 4475300 4169100 4509900 4406000 4160200 4378200 4357300 1 1 1 1 1 1 1 1 1 1 1 655940000 0 655940000 2603 904 2438 15256 18299 18299 1 DFNQFIK Unmodified 910.45487 0.45486751 260;844 P28370-2;P28370;O60264 SMARCA1;SMARCA5 Probable global transcription activator SNF2L1;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 no no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 56.998 57.216 2 0.0077596 18778 20211116_3446_TMUAki_TMT10x_S_F7 126.67 21.551 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2604 844;260 2439 15257;15258;15259 18300;18301;18302 18302 3 DFPETNNILK Unmodified 1189.5979 0.59790293 1128 P49915;P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 56.517 56.57 2 5.2595E-09 17542 20211116_3442_TMUAki_TMT10x_S_F4 151.22 104.33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2605 1128 2440 15260;15261 18303;18304 18304 2 DFPEYTFAIADEEDYAGEVK Unmodified 2308.0059 0.0059394035 654 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 By MS/MS By MS/MS 1.17 0.373 5 1 3 3 78.441 78.419 2;3 5.8574E-24 27579 20211116_3439_TMUAki_TMT10x_S_F1 161.76 149.96 18980000 32449000 366480 31718000 19309000 24917000 26454000 11923000 13682000 15969000 21736000 17674000 30276000 1780300 32307000 18707000 25511000 26064000 12900000 14764000 15430000 20719000 5 5 4 5 5 5 5 5 5 5 5 7862900 13544000 143880 13017000 6612000 12959000 9377000 5610600 6153300 6625100 9028800 7322200 12636000 768460 13316000 6418100 13040000 9267100 6105700 6503000 6428600 8620700 2 2 2 2 2 2 2 2 2 2 2 11117000 18905000 222590 18700000 12697000 11957000 17077000 6312600 7528700 9344000 12708000 10352000 17640000 1011900 18991000 12289000 12470000 16797000 6793900 8260700 9000900 12098000 3 3 2 3 3 3 3 3 3 3 3 2367700000 1196600000 1171000000 2606 654 2441 15262;15263;15264;15265;15266;15267 18305;18306;18307;18308;18309;18310;18311 18310 7 DFPFTIR Unmodified 894.45995 0.45995289 2272 Q8TCS8 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial yes yes 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 60.78 61.272 2 0.0013692 20420 20211116_3446_TMUAki_TMT10x_S_F7 138.33 77.21 3646700 6353500 0 6490400 4761300 3992100 3613600 4434000 4462400 4327200 4881800 3395100 5929000 275830 6574300 4533700 4230900 3751700 4482600 4517500 4230600 4696300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3646700 6353500 0 6490400 4761300 3992100 3613600 4434000 4462400 4327200 4881800 3395100 5929000 275830 6574300 4533700 4230900 3751700 4482600 4517500 4230600 4696300 1 1 0 1 1 1 1 1 1 1 1 190980000 0 190980000 2607 2272 2442 15268;15269 18312;18313 18313 2 DFPLSGYVELR Unmodified 1294.6558 0.65575216 338 O75489 NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 70.437 70.507 2 8.1041E-12 23081 20211116_3433_TMUAki_TMT10x_P_F5 142 114.17 4279700 6917600 0 6318400 3780200 6225200 4182000 3552100 3520500 3369600 4763100 3984300 6452600 282830 6486700 3630500 6287500 4200500 3740900 3654600 3298400 4556300 1 1 0 1 1 1 1 1 1 1 1 4279700 6917600 0 6318400 3780200 6225200 4182000 3552100 3520500 3369600 4763100 3984300 6452600 282830 6486700 3630500 6287500 4200500 3740900 3654600 3298400 4556300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 569700000 569700000 0 2608 338 2443 15270;15271;15272;15273 18314;18315;18316;18317 18315 4 DFPYEEDSRPR Unmodified 1409.6212 0.62115757 2495 Q96I25 RBM17 Splicing factor 45 yes yes 0 0 0 1 By matching By MS/MS 1 0 2 1 1 35.092 35.075 3 1.9473E-07 9975 20211116_3439_TMUAki_TMT10x_S_F1 139.32 121.49 278410 399860 753.36 522070 237730 196480 212710 370080 410330 312100 394490 259240 373570 23215 519090 227370 224150 223180 365770 408230 307200 381040 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 278410 399860 753.36 522070 237730 196480 212710 370080 410330 312100 394490 259240 373570 23215 519090 227370 224150 223180 365770 408230 307200 381040 1 1 1 1 1 1 1 1 1 1 1 61588000 39104000 22484000 2609 2495 2444 15274;15275 18318 18318 1 DFQEYVEPGEDFPASPQRR Unmodified 2266.0291 0.029074882 3350 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 yes yes 0 0 0 1 By MS/MS 3 0 1 1 54.836 54.639 3 0.00025753 17968 20211116_3430_TMUAki_TMT10x_P_F3 64.249 56.035 1029200 1672000 6389.9 1959300 1989800 2693400 1604900 1707600 1659600 1427400 1500500 958370 1561300 104740 1989500 1898700 2676500 1649700 1777500 1680400 1405700 1452400 1 1 1 1 1 1 1 1 1 1 1 1029200 1672000 6389.9 1959300 1989800 2693400 1604900 1707600 1659600 1427400 1500500 958370 1561300 104740 1989500 1898700 2676500 1649700 1777500 1680400 1405700 1452400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 303780000 303780000 0 2610 3350 2445 15276 18319 18319 1 DFQTETIRQEQELR Unmodified 1791.8751 0.87514042 391 O94888 UBXN7 UBX domain-containing protein 7 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 40.144 39.989 3 3.463E-43 10022 20211116_3440_TMUAki_TMT10x_S_F2 258.39 220.09 4161100 6831700 65856 8282000 6081700 6582000 4519300 5746300 6158900 5415500 6382500 3874900 6380100 424790 8321100 5795600 6791400 4716600 5874700 6201800 5302700 6150000 6 6 5 6 6 6 6 6 6 6 6 1870500 2838400 23472 3557500 4231600 4732900 2836400 2441900 2667700 2368300 2799100 1741800 2651200 210020 3596000 4023800 4697500 2944800 2596200 2726000 2316000 2696100 2 2 2 2 2 2 2 2 2 2 2 2290600 3993400 42384 4724500 1850100 1849200 1682900 3304400 3491200 3047300 3583400 2133000 3729000 214760 4725100 1771800 2093900 1771700 3278500 3475900 2986700 3453900 4 4 3 4 4 4 4 4 4 4 4 463970000 245500000 218470000 2611 391 2446 15277;15278;15279;15280 18320;18321;18322;18323;18324;18325 18323 6 DFRDHAEQQHIAAQQK Unmodified 1920.9191 0.91907092 2937 Q9NRY2 INIP SOSS complex subunit C yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 29.662 29.648 4 1.0459E-10 6554 20211116_3433_TMUAki_TMT10x_P_F5 133.66 118.27 99007 167050 7288.6 163380 263400 223400 124410 131670 134170 99828 158040 92240 155860 17304 167830 249510 221830 133770 137550 136910 98809 151710 1 1 1 1 1 1 1 1 1 1 1 99007 167050 7288.6 163380 263400 223400 124410 131670 134170 99828 158040 92240 155860 17304 167830 249510 221830 133770 137550 136910 98809 151710 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28393000 28393000 0 2612 2937 2447 15281;15282 18326 18326 1 DFRQPDRHPPEDFR Unmodified 1810.8499 0.84992872 2161 Q8IXT5 RBM12B RNA-binding protein 12B yes yes 0 0 0 2 By MS/MS 4.5 0.5 1 1 2 30.991 30.976 5 0.063093 6810 20211116_3431_TMUAki_TMT10x_P_F4 40.53 27.652 504130 803850 0 721270 680170 808630 544770 396470 441580 415710 573900 469340 749770 37440 742960 648330 809130 556470 424480 458440 405210 549520 1 1 0 1 1 1 1 1 1 1 1 504130 803850 0 721270 680170 808630 544770 396470 441580 415710 573900 469340 749770 37440 742960 648330 809130 556470 424480 458440 405210 549520 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 44495000 44495000 0 2613 2161 2448 15283;15284 18327 18327 1 DFSALESQLQDTQELLQEENR Unmodified 2492.1667 0.16669058 934 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 By MS/MS By MS/MS 1.78 0.786 4 3 2 5 4 54.002 53.951 3 2.1006E-76 26070 20211116_3428_TMUAki_TMT10x_P_F1 271.73 254.58 17957000 25584000 59446 25838000 17485000 20610000 21819000 14298000 13904000 15782000 20493000 16720000 23874000 962930 26263000 16875000 21177000 21661000 14900000 14726000 15352000 19565000 8 8 4 8 8 8 8 8 8 8 8 3661500 5627000 2300.1 5499300 3415300 5547200 3733000 3281700 2880200 3860200 3980600 3409100 5250200 283230 5620000 3281700 5597300 3743600 3468200 3006500 3746200 3805900 4 4 2 4 4 4 4 4 4 4 4 14296000 19957000 57146 20339000 14070000 15063000 18086000 11016000 11024000 11921000 16512000 13311000 18624000 679700 20643000 13594000 15579000 17917000 11432000 11719000 11606000 15759000 4 4 2 4 4 4 4 4 4 4 4 6172900000 3792900000 2380000000 2614 934 2449 15285;15286;15287;15288;15289;15290;15291;15292;15293 18328;18329;18330;18331;18332;18333;18334;18335;18336;18337;18338 18328 11 DFSAPTLEDHFNK Unmodified 1519.6943 0.69432251 1236 P55081 MFAP1 Microfibrillar-associated protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 53.094 53.237 3 1.0474E-14 15658 20211116_3431_TMUAki_TMT10x_P_F4 163.99 147.36 44285000 72756000 256340 79927000 70336000 82291000 50022000 75217000 75800000 64964000 68779000 41235000 67916000 4148400 81067000 66938000 83528000 52600000 76525000 75736000 63869000 66566000 10 10 4 10 10 10 10 10 10 10 10 23304000 36930000 129920 41485000 49403000 62988000 33590000 39109000 38682000 32670000 35174000 21699000 34477000 2321200 42321000 46974000 62305000 35057000 40776000 39005000 32172000 34039000 5 5 2 5 5 5 5 5 5 5 5 20981000 35826000 126420 38442000 20933000 19303000 16432000 36108000 37118000 32294000 33605000 19536000 33439000 1827300 38746000 19964000 21222000 17543000 35750000 36731000 31697000 32526000 5 5 2 5 5 5 5 5 5 5 5 2236800000 1236500000 1000300000 2615 1236 2450 15294;15295;15296;15297;15298 18339;18340;18341;18342;18343;18344;18345;18346;18347;18348 18339 10 DFSHPQMPK Oxidation (M) 1101.4913 0.49132937 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 1 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 31.123 31.16 3 0.0011292 6814 20211116_3431_TMUAki_TMT10x_P_F4 81.972 60.121 1541700 2509600 4977.1 2583000 3749200 3056900 1938300 1554400 1936800 1692300 2235100 1435600 2342000 163040 2637000 3549700 3051200 2060700 1660400 1981000 1647100 2146900 3 3 2 3 3 3 3 3 3 3 3 1457400 2405900 4977.1 2449200 3680600 3003500 1862800 1517600 1893000 1650800 2145900 1357100 2245100 156610 2503900 3483700 2992200 1985500 1622000 1933500 1606800 2062300 2 2 2 2 2 2 2 2 2 2 2 84308 103700 0 133790 68656 53378 75451 36793 43806 41423 89184 78497 96880 6436.6 133160 65980 58965 75199 38384 47560 40266 84628 1 1 0 1 1 1 1 1 1 1 1 223950000 216590000 7358500 2616 1079 2451 15299;15300;15301 18349;18350;18351 18349 1403 3 DFSHPQMPK Unmodified 1085.4964 0.49641475 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 0 By MS/MS By MS/MS 5.43 0.728 1 2 4 6 1 32.815 32.845 3 0.00013795 9701 20211116_3433_TMUAki_TMT10x_P_F5 126.07 92.146 6541600 9902500 70377 12095000 18004000 10719000 8352100 5188300 5441600 4960200 8547000 6091300 9248300 765770 12163000 17025000 10880000 8886400 5547400 5773500 4853800 8148900 12 12 10 12 12 12 12 12 12 12 12 5851000 8806600 68126 10664000 17311000 10278000 7720800 4699300 4898000 4471400 7628500 5448300 8224400 706380 10742000 16362000 10369000 8245600 5052700 5203300 4376400 7274500 11 11 9 11 11 11 11 11 11 11 11 690600 1096000 2250.4 1431100 692980 440580 631270 488970 543570 488850 918460 643030 1023900 59386 1421400 663040 511020 640840 494710 570130 477440 874400 1 1 1 1 1 1 1 1 1 1 1 331660000 297500000 34156000 2617 1079 2451 15302;15303;15304;15305;15306;15307;15308 18352;18353;18354;18355;18356;18357;18358;18359;18360;18361;18362;18363 18353 12 DFSPSGIFGAFQR Unmodified 1427.6834 0.68336389 1251 P56134;P56134-3;P56134-4;P56134-2 ATP5J2 ATP synthase subunit f, mitochondrial yes no 0 0 0 0 By MS/MS 1.5 0.5 1 1 2 77.381 77.356 2 1.6883E-22 26631 20211116_3429_TMUAki_TMT10x_P_F2 206.73 177.64 9378800 16243000 0 15038000 11338000 18170000 11113000 8751800 8971000 10090000 11586000 8732500 15152000 237560 15473000 10865000 18105000 11218000 9413500 9313000 9799300 11095000 2 2 0 2 2 2 2 2 2 2 2 9378800 16243000 0 15038000 11338000 18170000 11113000 8751800 8971000 10090000 11586000 8732500 15152000 237560 15473000 10865000 18105000 11218000 9413500 9313000 9799300 11095000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1954100000 1954100000 0 2618 1251 2452 15309;15310 18364;18365 18364 2 DFSSIIQTCSGNIQR Unmodified 1724.8152 0.8151827 2128 Q86Y82 STX12 Syntaxin-12 yes yes 0 0 0 0 By MS/MS 8 0 1 1 59.766 59.768 3 1.4296E-06 17502 20211116_3447_TMUAki_TMT10x_S_F8 103.67 88.982 2012800 3292900 0 3052000 2721400 2226600 1801900 3702400 2988300 3127200 3157500 1874000 3071800 167680 3118200 2585700 2352400 1912600 3672600 2994200 3077900 3040700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2012800 3292900 0 3052000 2721400 2226600 1801900 3702400 2988300 3127200 3157500 1874000 3071800 167680 3118200 2585700 2352400 1912600 3672600 2994200 3077900 3040700 1 1 0 1 1 1 1 1 1 1 1 601780000 0 601780000 2619 2128 2453 15311 18366 18366 1 DFSVFFQK Unmodified 1016.4967 0.49673232 412 O95202 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4.25 3.27 2 1 1 2 2 75.496 75.458 2 0.00043538 26414 20211116_3439_TMUAki_TMT10x_S_F1 148.38 115.26 10142000 16775000 173800 15674000 12075000 15071000 12262000 9420000 9339300 10293000 12499000 9444500 15649000 1029900 16059000 11594000 15264000 12338000 9889000 9741200 10016000 11960000 2 2 2 2 2 2 2 2 2 2 2 6418300 10617000 156650 9304800 6713300 10947000 7855700 5973800 5689600 6747600 7740800 5977200 9901800 682240 9609600 6475300 10939000 7841600 6347900 5955700 6558100 7403700 1 1 1 1 1 1 1 1 1 1 1 3723700 6158400 17155 6369200 5362100 4124300 4406800 3446200 3649700 3545000 4758300 3467300 5747200 347660 6449200 5118500 4324800 4496500 3541000 3785400 3458100 4555800 1 1 1 1 1 1 1 1 1 1 1 755000000 420190000 334810000 2620 412 2454 15312;15313;15314;15315 18367;18368;18369;18370 18369 4 DFTATDLSEFAAK Unmodified 1414.6616 0.6616254 1019 P42765 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4.75 0.924 1 4 4 3 6 6 70.709 70.712 2;3 9.5224E-44 22860 20211116_3431_TMUAki_TMT10x_P_F4 282.95 264.64 47272000 82894000 342720 82706000 59045000 72620000 53833000 61341000 58646000 58643000 62364000 44015000 77348000 4116300 84236000 56486000 74349000 55027000 62855000 59584000 57385000 60045000 12 12 6 12 12 12 12 12 12 12 12 21842000 37530000 35880 36865000 27306000 45283000 28095000 28352000 26696000 26355000 27425000 20336000 35017000 1717800 37781000 26191000 45231000 28413000 29621000 27246000 25822000 26433000 5 5 1 5 5 5 5 5 5 5 5 25430000 45364000 306840 45841000 31739000 27338000 25738000 32989000 31950000 32287000 34939000 23679000 42331000 2398500 46455000 30295000 29118000 26613000 33235000 32338000 31562000 33612000 7 7 5 7 7 7 7 7 7 7 7 4710300000 2528900000 2181400000 2621 1019 2455 15316;15317;15318;15319;15320;15321;15322;15323;15324;15325;15326;15327 18371;18372;18373;18374;18375;18376;18377;18378;18379;18380;18381;18382;18383;18384;18385;18386 18372 16 DFTATFGPLDSLNTR Unmodified 1653.7999 0.79985021 628 P11498 PC Pyruvate carboxylase, mitochondrial yes yes 0 0 0 0 By MS/MS 6 0 1 1 74.292 74.24 2 1.0713E-06 23417 20211116_3434_TMUAki_TMT10x_P_F6 116.6 98.783 2797300 4359300 103380 4301400 2529800 5003600 2964500 3093300 3091400 2817700 3398700 2605400 4067500 324520 4402800 2442800 5011100 2988200 3233200 3150300 2763300 3269100 1 1 1 1 1 1 1 1 1 1 1 2797300 4359300 103380 4301400 2529800 5003600 2964500 3093300 3091400 2817700 3398700 2605400 4067500 324520 4402800 2442800 5011100 2988200 3233200 3150300 2763300 3269100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 242770000 242770000 0 2622 628 2456 15328 18387 18387 1 DFTENPCLR Unmodified 1150.5077 0.50770771 89 O00451;O00451-3;O00451-2 GFRA2 GDNF family receptor alpha-2 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 39.355 39.408 2 1.2256E-05 10856 20211116_3442_TMUAki_TMT10x_S_F4 154.12 132.84 345080 510670 0 523710 677440 593280 387400 285420 333200 314630 402850 321300 476560 32514 534390 642220 593190 406450 306610 343820 306080 386460 1 1 0 1 1 1 1 1 1 1 1 345080 510670 0 523710 677440 593280 387400 285420 333200 314630 402850 321300 476560 32514 534390 642220 593190 406450 306610 343820 306080 386460 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 45396000 45396000 0 2623 89 2457 15329;15330;15331;15332 18388;18389;18390;18391 18391 4 DFTPAELR Unmodified 947.47125 0.47124585 77 O00264;O00264-2 PGRMC1 Membrane-associated progesterone receptor component 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 45.089 44.889 2 0.0014251 15046 20211116_3441_TMUAki_TMT10x_S_F3 122.13 75.758 3504800 5880900 93126 7312600 7911900 7740700 4649400 6090400 6673200 4987500 5896800 3264000 5492800 438910 7365400 7509900 7822200 4949300 6242500 6672800 4916500 5712500 3 3 2 3 3 3 3 3 3 3 3 2178300 3611500 93126 4558900 6638100 6517500 3614900 3779400 4103100 3178500 3578100 2028900 3373500 329850 4613200 6294500 6457200 3840000 3962800 4134300 3129100 3467900 2 2 2 2 2 2 2 2 2 2 2 1326600 2269300 0 2753800 1273900 1223200 1034500 2311000 2570100 1809000 2318700 1235200 2119300 109060 2752200 1215400 1365000 1109400 2279700 2538500 1787400 2244600 1 1 0 1 1 1 1 1 1 1 1 311000000 209510000 101480000 2624 77 2458 15333;15334;15335 18392;18393;18394 18394 3 DFTPVCTTELGR Unmodified 1394.65 0.65001485 859 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 0 0 By MS/MS By MS/MS 3.3 1.27 1 2 2 3 2 6 4 50.741 50.718 2;3 4.1343E-18 14638 20211116_3431_TMUAki_TMT10x_P_F4 218.49 196.75 19906000 33488000 104050 46718000 42671000 51244000 27816000 34836000 39791000 31933000 35642000 18533000 31298000 1568000 46793000 40531000 51556000 29363000 36160000 39810000 31307000 34511000 10 10 4 10 10 10 10 10 10 10 10 12785000 21034000 86313 29509000 35598000 45233000 22074000 21811000 25291000 20251000 22593000 11904000 19659000 1024900 29741000 33786000 44584000 23197000 23312000 25493000 19843000 21878000 6 6 3 6 6 6 6 6 6 6 6 7120400 12455000 17736 17208000 7072600 6011300 5742600 13025000 14500000 11681000 13049000 6629400 11639000 543100 17052000 6745100 6972200 6165600 12849000 14317000 11464000 12633000 4 4 1 4 4 4 4 4 4 4 4 6756000000 4063900000 2692100000 2625 859 2459 15336;15337;15338;15339;15340;15341;15342;15343;15344;15345 18395;18396;18397;18398;18399;18400;18401;18402;18403;18404;18405 18398 11 DFTSLENTVEER Unmodified 1438.6576 0.65760265 1536 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 0 By MS/MS 1.5 0.5 1 1 2 57.287 57.025 2 4.5579E-12 17196 20211116_3440_TMUAki_TMT10x_S_F2 140.24 117.41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2626 1536 2460 15346;15347 18406;18407 18407 2 DFTVASPAEFVTR Unmodified 1438.7092 0.70924429 1591 Q13085;Q13085-4;Q13085-3;Q13085-2;O00763;O00763-3;O00763-2 ACACA;ACACB Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 64.769 64.866 2 1.7157E-18 19645 20211116_3444_TMUAki_TMT10x_S_F5 160.18 107.01 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2627 1591 2461 15348;15349 18408;18409 18409 2 DFTVSAMHGDMDQK 2 Oxidation (M) 1612.6498 0.64975686 1277 P60842;P60842-2 EIF4A1 Eukaryotic initiation factor 4A-I yes no 0 0 2 0 By MS/MS By MS/MS 3.83 1.07 1 1 2 2 3 3 34.319 34.282 3 3.183E-06 8196 20211116_3431_TMUAki_TMT10x_P_F4 105.03 84.922 2363500 3746900 20521 4511200 4281100 4411300 2530900 2143600 2770200 2409900 3018800 2200700 3499100 228720 4546700 4061300 4449200 2666100 2301800 2816500 2342700 2904400 6 6 4 6 6 6 6 6 6 6 6 1682100 2492800 10407 3053000 3531500 3601100 1817500 1423700 1867200 1618100 2017500 1566200 2328100 164620 3083200 3343100 3585900 1934800 1563200 1902800 1572300 1941600 3 3 2 3 3 3 3 3 3 3 3 681410 1254100 10114 1458200 749580 810200 713380 719870 902920 791840 1001300 634510 1171000 64107 1463500 718250 863310 731370 738630 913760 770390 962840 3 3 2 3 3 3 3 3 3 3 3 295230000 225800000 69430000 2628 1277 2462 15350;15351;15352;15353;15354;15355 18410;18411;18412;18413;18414;18415 18411 1727;1728 6 DFTVSAMHGDMDQK Oxidation (M) 1596.6548 0.65484224 1277 P60842;P60842-2 EIF4A1 Eukaryotic initiation factor 4A-I yes no 0 0 1 0 By MS/MS 4 0 1 1 38.927 38.968 3 3.5849E-05 9965 20211116_3431_TMUAki_TMT10x_P_F4 85.457 72.257 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2629 1277 2462 15356 18416 18416 1727;1728 1 DFTVSAMHGDMDQK Unmodified 1580.6599 0.65992761 1277 P60842;P60842-2 EIF4A1 Eukaryotic initiation factor 4A-I yes no 0 0 0 0 By MS/MS 4 0 1 1 46.819 47.008 3 7.7583E-10 13567 20211116_3442_TMUAki_TMT10x_S_F4 114.7 93.147 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2630 1277 2462 15357 18417 18417 1 DFVAEPMGEKPVGSLAGIGEVLGK Oxidation (M) 2415.2356 0.23556218 344 O75531 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes yes 0 0 1 1 By MS/MS By MS/MS 6.11 1.24 2 4 5 4 3 9 9 75.688 75.706 3;4 1.809E-16 24027 20211116_3444_TMUAki_TMT10x_S_F5 124.86 116.04 78544000 144960000 825270 96886000 110990000 225990000 120360000 207050000 200440000 202530000 147960000 73137000 135080000 5892800 104170000 106700000 221830000 124080000 211340000 198550000 197990000 144350000 26 26 14 26 26 26 26 26 26 26 26 37931000 67559000 473480 46120000 48073000 133500000 61018000 99682000 95928000 97746000 70220000 35319000 62960000 2918400 49871000 46437000 129850000 62297000 103000000 95151000 95544000 68535000 13 13 7 13 13 13 13 13 13 13 13 40614000 77400000 351790 50766000 62920000 92493000 59345000 107370000 104520000 104780000 77737000 37818000 72123000 2974400 54295000 60259000 91986000 61782000 108340000 103400000 102440000 75819000 13 13 7 13 13 13 13 13 13 13 13 24320000000 12892000000 11428000000 2631 344 2463 15358;15359;15360;15361;15362;15363;15364;15365;15366;15367;15368;15369;15370;15371;15372;15373;15374;15375 18418;18419;18420;18421;18422;18423;18424;18425;18426;18427;18428;18429;18430;18431;18432;18433;18434;18435;18436;18437;18438;18439;18440;18441;18442;18443;18444 18434 248 27 DFVAEPMGEKPVGSLAGIGEVLGK Unmodified 2399.2406 0.24064756 344 O75531 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes yes 0 0 0 1 By MS/MS By matching 7.5 0.5 3 3 3 3 77.667 77.686 3;4 2.9972E-07 26894 20211116_3435_TMUAki_TMT10x_P_F7 83.039 64.158 13769000 23059000 676020 20449000 15068000 24533000 18354000 9751000 8529600 11314000 16447000 12825000 21507000 1789700 21107000 14571000 24409000 18142000 10707000 9388300 10985000 15621000 2 2 2 2 2 2 2 2 2 2 2 13769000 23059000 676020 20449000 15068000 24533000 18354000 9751000 8529600 11314000 16447000 12825000 21507000 1789700 21107000 14571000 24409000 18142000 10707000 9388300 10985000 15621000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3588200000 2082700000 1505500000 2632 344 2463 15376;15377;15378;15379;15380;15381 18445;18446 18446 2 DFVASIDATYAK Unmodified 1299.6347 0.63468237 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 0 By MS/MS By MS/MS 5.22 0.786 2 3 4 4 5 63.843 63.881 2;3 1.3517E-15 19191 20211116_3444_TMUAki_TMT10x_S_F5 196.48 156.48 60761000 104380000 541790 95032000 75407000 110630000 73054000 81074000 74343000 75172000 81566000 56576000 97364000 5497800 97842000 72261000 111070000 74265000 83745000 75832000 73660000 78460000 9 9 6 9 9 9 9 9 9 9 9 31058000 52360000 296690 46183000 37848000 77686000 41435000 46083000 40816000 40680000 42245000 28921000 48834000 2928900 48021000 36397000 76488000 41823000 48288000 41601000 39953000 40708000 3 3 2 3 3 3 3 3 3 3 3 29702000 52022000 245090 48850000 37559000 32941000 31618000 34991000 33528000 34491000 39322000 27656000 48530000 2568900 49821000 35864000 34586000 32442000 35458000 34231000 33707000 37753000 6 6 4 6 6 6 6 6 6 6 6 2931500000 984260000 1947300000 2633 799 2464 15382;15383;15384;15385;15386;15387;15388;15389;15390 18447;18448;18449;18450;18451;18452;18453;18454;18455;18456;18457;18458 18453 12 DFVEDDTTHG Unmodified 1134.4465 0.44654725 3219 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 36.328 36.298 2 1.3773E-06 10459 20211116_3439_TMUAki_TMT10x_S_F1 155.01 151.15 619540 1058300 1020.4 1099300 1271600 909860 739280 737060 814750 614270 976480 576850 987690 60724 1115700 1205900 934710 780050 754430 831300 604990 936960 2 2 1 2 2 2 2 2 2 2 2 290890 475320 0 509480 924240 666140 424180 351120 395580 278530 453740 270840 443650 32264 519680 873580 661880 455520 370720 405750 275020 435900 1 1 0 1 1 1 1 1 1 1 1 328640 583020 1020.4 589820 347390 243720 315100 385930 419160 335740 522740 306010 544040 28460 596060 332340 272830 324530 383710 425550 329970 501060 1 1 1 1 1 1 1 1 1 1 1 41891000 20175000 21715000 2634 3219 2465 15391;15392 18459;18460 18460 2 DFVNYLVR Unmodified 1024.5342 0.53418046 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 62.672 63.06 2 0.0044766 21141 20211116_3446_TMUAki_TMT10x_S_F7 98.009 73.158 24123000 43109000 737610 45346000 32254000 39782000 25849000 35012000 35074000 32662000 34344000 22467000 40234000 2801300 46019000 30810000 40763000 26840000 35768000 35252000 31997000 33153000 3 3 3 3 3 3 3 3 3 3 3 9713900 18559000 433630 18789000 18174000 26801000 13679000 15846000 16275000 15010000 14553000 9047900 17318000 1328000 19271000 17339000 26562000 14191000 16639000 16382000 14694000 14092000 1 1 1 1 1 1 1 1 1 1 1 14409000 24550000 303990 26557000 14080000 12981000 12170000 19167000 18799000 17652000 19791000 13419000 22916000 1473300 26748000 13471000 14200000 12650000 19130000 18869000 17302000 19061000 2 2 2 2 2 2 2 2 2 2 2 2197600000 904610000 1293000000 2635 1546 2466 15393;15394;15395 18461;18462 18462 2 DFVSEQLTSLLVNGVQLPALGENKK Unmodified 2698.4541 0.45414581 1218 P54136;P54136-2 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 1 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 80.596 80.557 4 7.539E-06 26743 20211116_3440_TMUAki_TMT10x_S_F2 78.098 66.466 5620800 9612300 65537 8811500 6696400 7438500 6956500 5021900 5368300 5403100 7135600 5233500 8966300 477020 9025200 6427100 7608200 6993500 5239300 5593600 5261200 6828800 3 3 2 3 3 3 3 3 3 3 3 1662300 2744400 53570 2543900 1320700 3033500 1757100 1575600 1566800 1601700 1861700 1548200 2560100 182960 2616700 1280600 3027400 1753600 1676300 1612700 1563200 1786800 1 1 1 1 1 1 1 1 1 1 1 3958500 6867800 11967 6267600 5375700 4405000 5199400 3446300 3801600 3801400 5273900 3685300 6406200 294060 6408500 5146600 4580900 5239900 3562900 3980900 3698100 5042000 2 2 1 2 2 2 2 2 2 2 2 2409600000 629460000 1780200000 2636 1218 2467 15396;15397;15398 18463;18464 18464 2 DFVTDADAEVLEHSGK Unmodified 1731.7952 0.79515877 1043 P46100;P46100-4;P46100-2;P46100-5;P46100-3 ATRX Transcriptional regulator ATRX yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 59.5 59.207 3 2.384E-06 17802 20211116_3428_TMUAki_TMT10x_P_F1 89.866 70.542 3532600 5959800 0 6225200 4353100 3574300 3247900 4334500 4473000 4382300 4729000 3288900 5562100 266150 6292400 4143700 3821800 3390200 4370100 4506000 4278000 4554000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3532600 5959800 0 6225200 4353100 3574300 3247900 4334500 4473000 4382300 4729000 3288900 5562100 266150 6292400 4143700 3821800 3390200 4370100 4506000 4278000 4554000 1 1 0 1 1 1 1 1 1 1 1 105840000 0 105840000 2637 1043 2468 15399;15400 18465;18466 18465 2 DFVTEALQSR Unmodified 1164.5775 0.57750184 1774 Q15126 PMVK Phosphomevalonate kinase yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 57.088 57.041 2 2.4886E-07 17276 20211116_3431_TMUAki_TMT10x_P_F4 118.21 93.874 10085000 17703000 165270 18911000 11715000 9530400 9648500 13091000 11964000 11694000 13104000 9391100 16523000 998070 19066000 11190000 10368000 9966600 13089000 12111000 11479000 12606000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10085000 17703000 165270 18911000 11715000 9530400 9648500 13091000 11964000 11694000 13104000 9391100 16523000 998070 19066000 11190000 10368000 9966600 13089000 12111000 11479000 12606000 3 3 2 3 3 3 3 3 3 3 3 253810000 0 253810000 2638 1774 2469 15401;15402 18467;18468;18469;18470 18467 4 DFYVAFQDLPTR Unmodified 1470.7143 0.71432967 1716 Q14566 MCM6 DNA replication licensing factor MCM6 yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 0.816 1 5 2 1 5 4 73.618 73.64 2;3 6.2299E-13 24370 20211116_3433_TMUAki_TMT10x_P_F5 143.42 112.86 25567000 45889000 90377 42013000 31989000 31354000 29820000 22377000 20745000 24209000 29868000 23805000 42804000 2104000 42974000 30611000 32397000 30080000 23259000 21825000 23568000 28531000 7 7 3 7 7 7 7 7 7 7 7 6521200 12127000 0 11110000 7566400 11665000 7785400 6040100 5454500 6417800 7873800 6071200 11312000 475270 11415000 7255300 11723000 7813400 6436400 5736800 6252400 7520600 2 2 0 2 2 2 2 2 2 2 2 19046000 33761000 90377 30902000 24423000 19689000 22035000 16336000 15290000 17791000 21995000 17734000 31492000 1628700 31560000 23356000 20674000 22267000 16823000 16088000 17316000 21010000 5 5 3 5 5 5 5 5 5 5 5 5537800000 1887200000 3650600000 2639 1716 2470 15403;15404;15405;15406;15407;15408;15409;15410;15411 18471;18472;18473;18474;18475;18476;18477;18478;18479 18473 9 DGADFAK Unmodified 722.32352 0.32351898 482;590 P04075;P04075-2;P09972 ALDOA;ALDOC Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase C no no 0 0 0 0 By MS/MS 2 0 1 1 34.532 34.626 2 0.099654 8020 20211116_3440_TMUAki_TMT10x_S_F2 58.815 31.853 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2640 482;590 2471 15412 18480 18480 1 DGALTQLNVAFSR Unmodified 1390.7205 0.72047768 696 P16435 POR NADPH--cytochrome P450 reductase yes yes 0 0 0 0 By MS/MS 7 0 1 1 61.28 61.773 2 1.8202E-12 20616 20211116_3446_TMUAki_TMT10x_S_F7 137.6 94.381 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2641 696 2472 15413 18481 18481 1 DGATILTHAYSR Unmodified 1303.6521 0.65206377 1696 Q14232;Q14232-2 EIF2B1 Translation initiation factor eIF-2B subunit alpha yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 36.901 36.945 3 4.6901E-06 8508 20211116_3444_TMUAki_TMT10x_S_F5 107.17 69.986 3581300 5292800 31225 5429300 5793800 6121000 4454100 3311100 3519600 3448000 4328400 3334300 4939200 297680 5539500 5519800 6129800 4559100 3512500 3650100 3361900 4150400 4 4 2 4 4 4 4 4 4 4 4 3097900 4496300 11904 4447800 5329600 5633900 3975800 2581600 2843900 2853200 3604000 2884100 4195300 239870 4558600 5073100 5597600 4068600 2787000 2969700 2775400 3453100 3 3 1 3 3 3 3 3 3 3 3 483350 796500 19320 981560 464270 487110 478240 729560 675620 594880 724450 450190 743910 57812 980890 446690 532190 490480 725500 680420 586540 697340 1 1 1 1 1 1 1 1 1 1 1 145840000 118600000 27237000 2642 1696 2473 15414;15415;15416 18482;18483;18484;18485 18485 4 DGAVNGPSVVGDQTPIEPQTSIER Unmodified 2465.2034 0.20341043 1091 P49321;P49321-3;P49321-4 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.943 1 3 3 2 6 3 53.016 52.888 2;3 3.6486E-141 17220 20211116_3430_TMUAki_TMT10x_P_F3 362.73 330.03 12860000 21803000 196770 23286000 18922000 25851000 15502000 24860000 22126000 19355000 19408000 11975000 20350000 944710 23690000 18066000 26155000 16109000 25161000 22124000 19130000 18806000 14 14 9 14 14 14 14 14 14 14 14 8248100 13471000 83040 14570000 15206000 21150000 12278000 12987000 11499000 10487000 11213000 7680200 12574000 487340 14885000 14509000 20956000 12583000 13542000 11723000 10345000 10826000 9 9 5 9 9 9 9 9 9 9 9 4612200 8332400 113730 8716300 3716400 4701300 3224600 11873000 10627000 8868600 8194500 4295100 7776400 457370 8804900 3556800 5198200 3525700 11620000 10401000 8785300 7980200 5 5 4 5 5 5 5 5 5 5 5 8834900000 5882300000 2952500000 2643 1091 2474 15417;15418;15419;15420;15421;15422;15423;15424;15425 18486;18487;18488;18489;18490;18491;18492;18493;18494;18495;18496;18497;18498;18499 18492 14 DGDFENPVPYTGAVK Unmodified 1607.7468 0.74675201 858 P30040 ERP29 Endoplasmic reticulum resident protein 29 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.632 1 3 1 2 3 57.559 57.548 2;3 2.8206E-19 17490 20211116_3431_TMUAki_TMT10x_P_F4 172.17 153.56 26909000 46227000 249480 50402000 39237000 46544000 30191000 40049000 39902000 34518000 39745000 25057000 43150000 2572700 51066000 37405000 47508000 31398000 40881000 40163000 33940000 38346000 7 7 3 7 7 7 7 7 7 7 7 12869000 22109000 173530 23689000 27243000 34262000 19647000 17425000 17651000 14902000 18324000 11983000 20636000 1405700 24213000 25940000 33873000 20264000 18491000 18068000 14658000 17656000 3 3 2 3 3 3 3 3 3 3 3 14041000 24118000 75944 26713000 11993000 12283000 10544000 22624000 22251000 19616000 21421000 13073000 22514000 1167000 26853000 11465000 13635000 11134000 22390000 22095000 19282000 20690000 4 4 1 4 4 4 4 4 4 4 4 3664500000 1741200000 1923300000 2644 858 2475 15426;15427;15428;15429;15430 18500;18501;18502;18503;18504;18505;18506 18502 7 DGDILGK Unmodified 716.37047 0.37046918 1316 P61604 HSPE1 10 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 43.523 43.498 2 0.030941 13270 20211116_3430_TMUAki_TMT10x_P_F3 79.469 36.345 8769300 15314000 20166 14461000 11015000 10546000 11085000 8817700 9210200 8799400 11854000 8164700 14286000 702270 14754000 10559000 10946000 11183000 9051900 9545700 8594700 11353000 3 3 1 3 3 3 3 3 3 3 3 2636900 4158900 0 3855800 3681400 4344900 3157600 2279700 2622000 2408300 3197200 2455000 3879500 201320 3962200 3514700 4349700 3213700 2425900 2711300 2346800 3066400 1 1 0 1 1 1 1 1 1 1 1 6132400 11155000 20166 10605000 7333100 6201100 7927800 6538000 6588200 6391100 8656500 5709700 10407000 500950 10792000 7044700 6596500 7969000 6626000 6834400 6247900 8286600 2 2 1 2 2 2 2 2 2 2 2 252580000 71373000 181200000 2645 1316 2476 15431;15432;15433 18507;18508;18509 18507 3 DGDYRDQDYRTEQGEEEEEEEDEEEEEK Unmodified 3508.3306 0.33059319 1461 P98175;P98175-2;P98175-5 RBM10 RNA-binding protein 10 yes no 0 0 0 2 By MS/MS By MS/MS 1 0 2 1 1 37.62 37.577 4 3.0463E-109 9031 20211116_3428_TMUAki_TMT10x_P_F1 293.55 291.88 936990 1398100 2174.7 3773900 3476200 2653700 1649800 1111300 1897200 787520 1664400 872360 1313500 105480 3665400 3286800 2737900 1776600 1198100 1911000 782470 1612800 2 2 1 2 2 2 2 2 2 2 2 667570 986370 0 2681700 3414900 2615500 1618600 801860 1345400 578620 1189100 621500 926730 84030 2615000 3228500 2627800 1727300 900130 1375100 574310 1151900 1 1 0 1 1 1 1 1 1 1 1 269410 411770 2174.7 1092200 61370 38249 31182 309480 551800 208900 475240 250870 386770 21449 1050400 58217 110070 49325 297960 535860 208170 460820 1 1 1 1 1 1 1 1 1 1 1 224530000 165070000 59463000 2646 1461 2477 15434;15435 18510;18511 18510 2 DGEEAGAYDGPR Unmodified 1235.5055 0.50545911 868 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 31.161 31.186 2 4.4045E-17 6492 20211116_3428_TMUAki_TMT10x_P_F1 215.83 166.41 267930 490630 0 393990 485330 378210 351230 250470 262100 248160 382350 249420 457450 18506 408520 461550 383390 360520 261040 274810 242460 365120 2 2 0 2 2 2 2 2 2 2 2 119000 192860 0 172820 309460 216460 134440 110030 106910 109130 138360 110790 179890 11845 178370 292280 215430 144670 117220 111090 106620 132500 1 1 0 1 1 1 1 1 1 1 1 148940 297770 0 221170 175870 161750 216780 140440 155180 139040 243990 138630 277560 6660.9 230150 169270 167960 215850 143820 163720 135850 232620 1 1 0 1 1 1 1 1 1 1 1 28139000 11633000 16506000 2647 868 2478 15436;15437 18512;18513 18512 2 DGEHVIDQGDDGDNFYVIDR Unmodified 2277.9774 0.97743324 886 P31323 PRKAR2B cAMP-dependent protein kinase type II-beta regulatory subunit yes yes 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 53.713 53.551 3 1.294E-51 15476 20211116_3428_TMUAki_TMT10x_P_F1 231.77 197.98 5125600 8655700 88976 9631500 6250000 7205300 5286400 5998300 5870400 5926500 7168100 4773000 8080300 510380 9720500 5973100 7462800 5430700 6157500 5992700 5791100 6874700 5 5 3 5 5 5 5 5 5 5 5 2095400 3641800 72108 3934700 3630400 4722100 2949600 2514500 2543400 2384100 2879200 1951600 3399300 262430 4005100 3468200 4712400 3014900 2664100 2617100 2333900 2767100 2 2 2 2 2 2 2 2 2 2 2 3030200 5013900 16868 5696800 2619600 2483200 2336800 3483800 3327100 3542300 4288900 2821400 4681000 247950 5715400 2504900 2750400 2415800 3493300 3375500 3457200 4107600 3 3 1 3 3 3 3 3 3 3 3 1249700000 789550000 460160000 2648 886 2479 15438;15439;15440 18514;18515;18516;18517;18518 18515 5 DGEIVGLSGR Unmodified 1001.5142 0.5141733 848 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 By MS/MS 3 0 1 1 39.485 39.538 2 2.0349E-08 11759 20211116_3430_TMUAki_TMT10x_P_F3 169.77 141.56 309600 452180 756.02 548560 703050 606640 377740 317340 368970 282360 404820 288280 422290 31883 553680 665990 607920 399900 336200 377020 277210 389410 1 1 1 1 1 1 1 1 1 1 1 309600 452180 756.02 548560 703050 606640 377740 317340 368970 282360 404820 288280 422290 31883 553680 665990 607920 399900 336200 377020 277210 389410 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23087000 23087000 0 2649 848 2480 15441 18519 18519 1 DGELHIAEHPAGHLVLK Unmodified 1834.969 0.96898123 1799 Q15397 KIAA0020 Pumilio domain-containing protein KIAA0020 yes yes 0 0 0 0 By MS/MS 6 0 1 1 40.488 40.517 5 2.5073E-05 9691 20211116_3434_TMUAki_TMT10x_P_F6 86.641 67.566 551980 853350 0 1013000 1423800 1402000 850230 767120 797060 718700 822500 513950 796870 57928 1028000 1350800 1390000 890770 810540 814110 703920 792650 1 1 0 1 1 1 1 1 1 1 1 551980 853350 0 1013000 1423800 1402000 850230 767120 797060 718700 822500 513950 796870 57928 1028000 1350800 1390000 890770 810540 814110 703920 792650 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 318210000 318210000 0 2650 1799 2481 15442 18520 18520 1 DGELPVEDDIDLSDVELDDLGKDEL Unmodified 2757.2604 0.26037577 1769 Q15084;Q15084-5;Q15084-3;Q15084-4;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 80.516 80.501 3 6.5782E-17 26492 20211116_3428_TMUAki_TMT10x_P_F1 129.84 115.08 8547800 14248000 124750 13374000 8729200 12490000 10540000 6413300 6586200 8170300 10462000 7959400 13292000 780740 13692000 8420000 12642000 10474000 6879900 7010800 7907200 9972300 3 3 2 3 3 3 3 3 3 3 3 6152200 9687800 52615 9271200 5512000 9182500 7049000 4198500 4356700 5415800 6953200 5728300 9038200 503390 9486200 5324000 9248000 6986400 4556800 4642100 5239200 6627100 2 2 1 2 2 2 2 2 2 2 2 2395600 4560200 72135 4103100 3217200 3307800 3491000 2214700 2229500 2754600 3508800 2231100 4253500 277350 4206200 3096100 3394300 3487700 2323100 2368700 2668000 3345200 1 1 1 1 1 1 1 1 1 1 1 2296300000 1568600000 727730000 2651 1769 2482 15443;15444 18521;18522;18523 18521 3 DGEYVVEVR Unmodified 1064.5138 0.51383895 1570 Q12860;Q12860-2 CNTN1 Contactin-1 yes no 0 0 0 0 By MS/MS 1.5 0.5 1 1 2 39.568 39.541 2 0.060898 9910 20211116_3440_TMUAki_TMT10x_S_F2 53.493 36.53 774470 1363000 23590 1566100 807560 749910 856640 800550 880260 860720 1118200 721280 1272600 86657 1571200 776990 815450 867090 813190 902920 838150 1071300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 774470 1363000 23590 1566100 807560 749910 856640 800550 880260 860720 1118200 721280 1272600 86657 1571200 776990 815450 867090 813190 902920 838150 1071300 1 1 1 1 1 1 1 1 1 1 1 54572000 0 54572000 2652 1570 2483 15445;15446 18524 18524 1 DGFRDFPAMVQELHQGGR Oxidation (M) 2074.9643 0.96430656 604 P10253 GAA Lysosomal alpha-glucosidase;76 kDa lysosomal alpha-glucosidase;70 kDa lysosomal alpha-glucosidase yes yes 0 0 1 1 By matching By MS/MS 5.67 0.471 1 2 2 1 44.925 45.046 4 4.3324E-05 11758 20211116_3445_TMUAki_TMT10x_S_F6 80.975 71.687 1776400 3024500 2943.4 3385300 1456500 1387300 1558600 2472700 2561500 2134100 2521300 1654000 2823500 145540 3398200 1399300 1560900 1606700 2449200 2560600 2098200 2433500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1776400 3024500 2943.4 3385300 1456500 1387300 1558600 2472700 2561500 2134100 2521300 1654000 2823500 145540 3398200 1399300 1560900 1606700 2449200 2560600 2098200 2433500 1 1 1 1 1 1 1 1 1 1 1 445890000 284580000 161310000 2653 604 2484 15447;15448;15449 18525 18525 586 1 DGFRDFPAMVQELHQGGRR Oxidation (M) 2231.0654 0.065417584 604 P10253 GAA Lysosomal alpha-glucosidase;76 kDa lysosomal alpha-glucosidase;70 kDa lysosomal alpha-glucosidase yes yes 0 0 1 2 By MS/MS 8 0 1 1 38.238 38.679 5 0.01118 8918 20211116_3447_TMUAki_TMT10x_S_F8 51.819 40.38 301940 533950 3530 515510 325210 313240 341590 317300 320100 298590 406690 281170 498160 28649 524180 312450 331680 344970 321840 329660 292390 389630 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 301940 533950 3530 515510 325210 313240 341590 317300 320100 298590 406690 281170 498160 28649 524180 312450 331680 344970 321840 329660 292390 389630 1 1 1 1 1 1 1 1 1 1 1 38158000 0 38158000 2654 604 2485 15450 18526 18526 586 1 DGFVALSK Unmodified 835.44397 0.44396847 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 1.12 2 2 2 2 4 4 51.239 51.35 2 0.00043104 14356 20211116_3445_TMUAki_TMT10x_S_F6 147.19 58.243 68962000 105390000 622040 116120000 103230000 94256000 70901000 52930000 52123000 50409000 78970000 64214000 98378000 6709000 117380000 98200000 96442000 73027000 55826000 54800000 49336000 75348000 7 7 6 7 7 7 7 7 7 7 7 43876000 65625000 490680 73813000 79024000 73246000 46950000 35202000 34320000 33502000 50416000 40856000 61265000 4519200 74715000 74991000 73798000 48909000 37660000 36038000 32790000 48136000 5 5 4 5 5 5 5 5 5 5 5 25085000 39763000 131360 42307000 24204000 21010000 23951000 17728000 17803000 16907000 28554000 23358000 37112000 2189800 42662000 23209000 22643000 24117000 18166000 18762000 16546000 27212000 2 2 2 2 2 2 2 2 2 2 2 5324100000 2742200000 2581900000 2655 2334 2486 15451;15452;15453;15454;15455;15456;15457;15458 18527;18528;18529;18530;18531;18532;18533;18534;18535 18535 9 DGGLQNMELHGMIMLR 3 Oxidation (M) 1861.8485 0.84847344 1072 P48444;P48444-2 ARCN1 Coatomer subunit delta yes no 0 0 3 0 By MS/MS 4 0 1 1 39.991 40.189 3 0.017379 10801 20211116_3442_TMUAki_TMT10x_S_F4 43.208 31.232 1047300 1660000 11485 2146800 828670 833800 797920 1765600 2010500 1544200 1699700 975140 1550800 80766 2136100 793600 951340 848520 1741500 1981300 1517300 1649200 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1047300 1660000 11485 2146800 828670 833800 797920 1765600 2010500 1544200 1699700 975140 1550800 80766 2136100 793600 951340 848520 1741500 1981300 1517300 1649200 3 3 1 3 3 3 3 3 3 3 3 202990000 0 202990000 2656 1072 2487 15459 18536;18537;18538 18538 1392;1393;1394 3 DGGNPFAEPSELDNPFQDPAVIQHRPSR Unmodified 3089.4591 0.45912462 138 O14828 SCAMP3 Secretory carrier-associated membrane protein 3 yes yes 0 0 0 1 By MS/MS By MS/MS 4.2 0.748 1 2 2 2 3 60.85 60.816 4 8.3299E-18 18000 20211116_3444_TMUAki_TMT10x_S_F5 128.92 123.2 14288000 23974000 0 24889000 18658000 22315000 16989000 18255000 17286000 17362000 21666000 13302000 22373000 755280 25288000 17840000 22800000 17329000 18738000 17728000 16994000 20765000 8 8 0 8 8 8 8 8 8 8 8 5759800 9527800 0 11040000 7291300 12865000 8525700 7264300 6785500 7802000 9843400 5362700 8896100 283620 11183000 7020200 12868000 8529600 7684500 7087700 7597700 9400900 3 3 0 3 3 3 3 3 3 3 3 8528100 14446000 0 13850000 11367000 9449800 8463600 10990000 10500000 9560400 11823000 7939800 13477000 471670 14105000 10820000 9932900 8799800 11054000 10640000 9396100 11364000 5 5 0 5 5 5 5 5 5 5 5 4375900000 2081400000 2294500000 2657 138 2488 15460;15461;15462;15463;15464 18539;18540;18541;18542;18543;18544;18545;18546 18545 8 DGGVQACFSR Unmodified 1095.4767 0.47674194 563 P08754 GNAI3 Guanine nucleotide-binding protein G(k) subunit alpha yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.816 1 1 1 1 2 34.609 34.502 2 1.8476E-06 8205 20211116_3431_TMUAki_TMT10x_P_F4 153.1 103.57 1691400 2658400 1473 2852200 2816900 2644200 1894400 1490800 1683500 1514200 2011100 1574800 2481300 150070 2892900 2677400 2680600 1963300 1574600 1733600 1477900 1929900 2 2 1 2 2 2 2 2 2 2 2 1181800 1847200 0 2015500 2248700 2161100 1364900 1055700 1206100 1085700 1411900 1100300 1724300 105630 2046400 2133400 2167800 1425800 1130100 1241300 1059100 1355600 1 1 0 1 1 1 1 1 1 1 1 509570 811160 1473 836720 568210 483050 529510 435020 477420 428460 599210 474470 757000 44441 846500 543940 512840 537520 444530 492300 418720 574270 1 1 1 1 1 1 1 1 1 1 1 90127000 69185000 20942000 2658 563 2489 15465;15466;15467 18547;18548;18549 18547 3 DGHHHYEGAVVILDAGAQYGK Unmodified 2236.0661 0.06612909 1128 P49915 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 46.702 46.839 5 3.6445E-07 12270 20211116_3444_TMUAki_TMT10x_S_F5 85.937 67.341 2050800 3279700 80566 3768900 2949700 3101800 2131300 2252900 2528200 2172200 2534800 1910100 3062100 257700 3800400 2812600 3182000 2217000 2331000 2554900 2124800 2445000 2 2 2 2 2 2 2 2 2 2 2 1049500 1681900 51912 1818800 1960200 2190500 1376400 1244300 1339100 1180900 1349300 977600 1569900 148150 1851400 1868000 2187300 1425500 1311000 1364300 1156000 1301400 1 1 1 1 1 1 1 1 1 1 1 1001200 1597800 28654 1950100 989510 911390 754910 1008600 1189100 991330 1185400 932470 1492200 109550 1949000 944620 994720 791440 1020100 1190500 968900 1143600 1 1 1 1 1 1 1 1 1 1 1 718730000 205100000 513620000 2659 1128 2490 15468;15469;15470 18550;18551 18551 2 DGIDDESYGQIFKPIISK Unmodified 2024.0102 0.01023692 2362 Q92769;Q92769-3 HDAC2 Histone deacetylase 2 yes no 0 0 0 1 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 73.45 73.465 3 1.3846E-17 25502 20211116_3446_TMUAki_TMT10x_S_F7 153.86 130.99 33950000 58922000 691030 54277000 29960000 47421000 40429000 28673000 31514000 35213000 40344000 31616000 54963000 3356300 55597000 29029000 48311000 40185000 30295000 32763000 34121000 38645000 6 6 5 6 6 6 6 6 6 6 6 12419000 20673000 195770 19657000 12130000 22003000 14998000 10512000 11338000 13082000 14124000 11565000 19286000 1161500 20160000 11712000 22012000 14950000 11344000 11794000 12670000 13538000 2 2 1 2 2 2 2 2 2 2 2 21531000 38249000 495260 34620000 17830000 25418000 25430000 18162000 20176000 22131000 26220000 20051000 35677000 2194800 35437000 17317000 26298000 25235000 18951000 20970000 21451000 25107000 4 4 4 4 4 4 4 4 4 4 4 2611300000 735110000 1876200000 2660 2362 2491 15471;15472;15473 18552;18553;18554;18555;18556;18557 18557 6 DGIEINFQVQERHKYVVER Unmodified 2358.208 0.2080423 2330 Q8WZ42-9;Q8WZ42-7;Q8WZ42-12;Q8WZ42;Q8WZ42-3;Q8WZ42-10;Q8WZ42-5;Q8WZ42-11;Q8WZ42-4;Q8WZ42-2;Q8WZ42-8;Q8WZ42-13;Q8WZ42-6 TTN Titin yes no 0 0 0 2 By MS/MS By MS/MS 4 0 3 2 1 52.955 53.081 4;5 0.081128 16137 20211116_3442_TMUAki_TMT10x_S_F4 37.999 23.385 7147000 11809000 121410 11240000 9354400 13684000 9519200 10426000 9570400 9205300 10283000 6654800 11016000 646260 11543000 8975100 13716000 9648700 10728000 9759200 9040700 9897800 3 3 2 3 3 3 3 3 3 3 3 4820200 7497400 121410 7328300 6698900 11009000 6971400 6602600 5929400 6077200 6784600 4489000 6995200 539090 7543000 6437400 10889000 7024900 6919700 6108100 5956900 6518400 2 2 2 2 2 2 2 2 2 2 2 2326800 4311200 0 3911500 2655600 2674800 2547800 3823100 3640900 3128200 3498700 2165800 4021300 107180 4000100 2537700 2827000 2623800 3808300 3651100 3083800 3379400 1 1 0 1 1 1 1 1 1 1 1 2371800000 2012700000 359160000 2661 2330 2492 15474;15475;15476 18558;18559 18559 2 DGIEPGHIPGTVNIPFTDFLSQEGLEK Unmodified 2909.4447 0.44470334 800 P25325;P25325-2 MPST 3-mercaptopyruvate sulfurtransferase yes no 0 0 0 0 By MS/MS By MS/MS 4.8 1.17 1 1 1 2 3 2 78.954 78.936 3 8.9327E-13 25397 20211116_3444_TMUAki_TMT10x_S_F5 113.65 106.62 8468300 13703000 143140 12699000 9419800 12363000 10987000 6168200 6381100 7891800 10217000 7885900 12783000 847150 13021000 9080100 12476000 10920000 6635600 6829300 7636600 9737600 5 5 4 5 5 5 5 5 5 5 5 4947000 7771400 58901 7118300 4499300 8483700 5750100 3677900 3559000 4459600 6117200 4606500 7249100 457100 7328400 4349000 8450500 5699400 4005400 3807300 4323200 5821900 3 3 2 3 3 3 3 3 3 3 3 3521400 5931600 84236 5581000 4920500 3879200 5236800 2490200 2822100 3432300 4100100 3279400 5533500 390050 5692900 4731100 4025700 5220600 2630200 3022000 3313300 3915700 2 2 2 2 2 2 2 2 2 2 2 4254100000 2417200000 1837000000 2662 800 2493 15477;15478;15479;15480;15481 18560;18561;18562;18563;18564 18563 5 DGIVLGADTR Unmodified 1015.5298 0.52982336 2571 Q99436;Q99436-2 PSMB7 Proteasome subunit beta type-7 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 40.547 40.423 2 0.020652 13371 20211116_3441_TMUAki_TMT10x_S_F3 61.56 32.184 2132300 3047100 43496 4333300 3030200 2430500 1966900 2149700 2263100 1839900 3109000 1985700 2848000 229900 4301400 2881400 2587100 2059900 2190600 2319300 1809700 2973000 2 2 2 2 2 2 2 2 2 2 2 612770 837900 17422 1106300 1918200 1514800 837170 782460 829930 621070 947840 570680 782850 85322 1115800 1813100 1501600 905470 827680 848810 613220 910690 1 1 1 1 1 1 1 1 1 1 1 1519500 2209200 26074 3226900 1112100 915630 1129700 1367200 1433100 1218900 2161200 1415000 2065200 144570 3185600 1068300 1085500 1154400 1362900 1470500 1196500 2062300 1 1 1 1 1 1 1 1 1 1 1 63316000 29862000 33454000 2663 2571 2494 15482;15483 18565;18566 18566 2 DGKYDLDFK Unmodified 1099.5186 0.51858998 568 P09104;P09104-2 ENO2 Gamma-enolase yes no 0 0 0 1 By MS/MS 5 0 1 1 49.418 49.601 3 0.053724 14483 20211116_3433_TMUAki_TMT10x_P_F5 45.077 18.563 4337600 6165400 0 8752900 16998000 10892000 6102900 5329900 5838600 4498100 6673000 4038400 5762700 502530 8778600 16022000 10839000 6751900 5674900 5981000 4427400 6411400 1 1 0 1 1 1 1 1 1 1 1 4337600 6165400 0 8752900 16998000 10892000 6102900 5329900 5838600 4498100 6673000 4038400 5762700 502530 8778600 16022000 10839000 6751900 5674900 5981000 4427400 6411400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 442040000 442040000 0 2664 568 2495 15484 18567 18567 1 DGKYDLDFKSPTDPSR Unmodified 1839.8639 0.86390703 568 P09104;P09104-2 ENO2 Gamma-enolase yes no 0 0 0 2 By MS/MS By MS/MS 5.25 0.829 1 1 2 1 3 46.711 46.861 4 3.9024E-07 12116 20211116_3434_TMUAki_TMT10x_P_F6 107.98 90.898 17622000 28236000 178610 33288000 26888000 24214000 17756000 39855000 37908000 28458000 31602000 16407000 26366000 1517000 33466000 25547000 25579000 19112000 39392000 37459000 28263000 30680000 5 5 3 5 5 5 5 5 5 5 5 3808000 5555100 0 7250500 14670000 13883000 8033000 9608300 8937500 6467700 6767700 3544600 5189900 342650 7376100 13891000 13638000 8523200 9890800 8975800 6446100 6595700 1 1 0 1 1 1 1 1 1 1 1 13814000 22681000 178610 26037000 12218000 10331000 9722600 30247000 28970000 21990000 24834000 12863000 21176000 1174300 26090000 11656000 11941000 10588000 29501000 28483000 21817000 24085000 4 4 3 4 4 4 4 4 4 4 4 1703900000 712320000 991590000 2665 568 2496 15485;15486;15487;15488 18568;18569;18570;18571 18568 4 DGLAEDLAALK Unmodified 1114.587 0.58700389 995 P41219;P41219-2 PRPH Peripherin yes no 0 0 0 0 By MS/MS 2 0 1 1 70.197 69.914 2 3.4811E-07 23749 20211116_3429_TMUAki_TMT10x_P_F2 139.43 81.844 4096800 6544900 7686.5 6665100 5217200 7761200 5027900 4953300 4254600 4418100 4764300 3814600 6107500 362510 6807400 4998200 7775900 5086000 5161900 4380300 4337000 4580200 1 1 1 1 1 1 1 1 1 1 1 4096800 6544900 7686.5 6665100 5217200 7761200 5027900 4953300 4254600 4418100 4764300 3814600 6107500 362510 6807400 4998200 7775900 5086000 5161900 4380300 4337000 4580200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 440070000 440070000 0 2666 995 2497 15489 18572 18572 1 DGLAFNALIHR Unmodified 1225.6568 0.65675521 235 O43707 ACTN4 Alpha-actinin-4 no no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 53.008 53.364 3 1.1659E-08 16667 20211116_3435_TMUAki_TMT10x_P_F7 152.07 109.47 6571500 10388000 88271 11561000 7657100 8251300 6457300 6360700 6460500 6110700 7500100 6119200 9697600 614250 11662000 7315300 8567600 6612800 6555100 6609200 5978300 7202900 5 5 3 5 5 5 5 5 5 5 5 2884500 4290900 31856 5160400 4456500 5266000 3227200 2638200 2789400 2551800 3133300 2685900 4007100 278850 5204700 4243300 5299100 3324200 2812400 2869100 2495800 3012000 2 2 1 2 2 2 2 2 2 2 2 3687000 6097200 56415 6400600 3200600 2985300 3230100 3722500 3671000 3558900 4366800 3433300 5690500 335410 6457100 3072000 3268500 3288500 3742700 3740000 3482500 4190900 3 3 2 3 3 3 3 3 3 3 3 2093400000 1220300000 873080000 2667 235 2498 15490;15491;15492;15493 18573;18574;18575;18576;18577 18574 5 DGLALGPGPFVTALEYATDTK Unmodified 2135.0787 0.078650837 2778 Q9H0R4;Q9H0R4-2 HDHD2 Haloacid dehalogenase-like hydrolase domain-containing protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.957 1 2 2 1 3 3 81.662 81.671 3 2.9696E-26 27104 20211116_3436_TMUAki_TMT10x_P_F8 160.76 146.45 5878400 9554600 84491 9429800 6892300 8555000 7217500 5449200 5678700 5806800 7214000 5473900 8915000 569110 9615700 6621200 8699400 7256400 5707900 5899000 5656500 6911600 7 7 4 7 7 7 7 7 7 7 7 3449300 5666400 64622 5480800 3495900 5667100 3858100 3299300 3445700 3480900 4131700 3212100 5286600 337930 5607200 3364500 5708600 3881700 3479400 3547800 3392100 3964500 4 4 3 4 4 4 4 4 4 4 4 2429100 3888300 19869 3949000 3396400 2887900 3359400 2150000 2233100 2325900 3082300 2261800 3628400 231180 4008500 3256800 2990800 3374600 2228500 2351200 2264400 2947100 3 3 1 3 3 3 3 3 3 3 3 1056000000 316240000 739780000 2668 2778 2499 15494;15495;15496;15497;15498;15499 18578;18579;18580;18581;18582;18583;18584 18581 7 DGLDYILGALESGK Unmodified 1449.7351 0.73512469 1916 Q5C9Z4 NOM1 Nucleolar MIF4G domain-containing protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 81.412 81.437 3 0.0081894 28832 20211116_3446_TMUAki_TMT10x_S_F7 60.55 41.156 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2669 1916 2500 15500;15501 18585;18586 18586 2 DGLGFCALIHR Unmodified 1257.6288 0.6288259 644 P12814;P12814-2;P12814-3;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 53.76 54.08 3 1.2984E-14 17511 20211116_3446_TMUAki_TMT10x_S_F7 154.84 127.1 2228600 3765600 35656 3875800 3073800 4376600 2812900 2927300 2466600 2541200 2995800 2075200 3514100 219340 3953700 2942300 4395100 2856200 3037900 2543300 2497800 2873600 3 3 2 3 3 3 3 3 3 3 3 1643300 2794200 20197 2891600 2512500 3844000 2309000 2164600 1772900 1843300 2247900 1530100 2607600 156750 2957300 2404500 3819600 2336200 2275900 1843900 1813500 2153800 2 2 1 2 2 2 2 2 2 2 2 585330 971370 15459 984190 561390 532550 503910 762770 693690 697860 747910 545110 906440 62599 996380 537770 575560 520020 761970 699330 684240 719810 1 1 1 1 1 1 1 1 1 1 1 711800000 417450000 294360000 2670 644 2501 15502;15503;15504 18587;18588;18589;18590 18589 4 DGLGGLPDIVR Unmodified 1110.6033 0.60332266 1036 P45974;P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 60.374 60.262 2 1.953E-17 18603 20211116_3431_TMUAki_TMT10x_P_F4 192.64 168.68 5891900 10106000 0 10525000 5664000 5061900 5063600 7912700 7898100 7814400 8203700 5485900 9431500 482010 10626000 5415600 5557800 5255400 7898300 7921800 7636000 7904400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5891900 10106000 0 10525000 5664000 5061900 5063600 7912700 7898100 7814400 8203700 5485900 9431500 482010 10626000 5415600 5557800 5255400 7898300 7921800 7636000 7904400 1 1 0 1 1 1 1 1 1 1 1 606800000 0 606800000 2671 1036 2502 15505;15506;15507;15508 18591;18592;18593;18594 18592 4 DGLGGLPDIVRDR Unmodified 1381.7314 0.73137672 1036 P45974;P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 1 By matching By MS/MS 4 0 2 1 1 52.716 52.823 3 3.8677E-09 16057 20211116_3442_TMUAki_TMT10x_S_F4 127.78 54.311 2320300 3929600 82824 4371300 2922700 2180700 2080400 3666200 3542200 2760600 3481700 2161100 3668400 278000 4395500 2786200 2390000 2199500 3625500 3537500 2733500 3360500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2320300 3929600 82824 4371300 2922700 2180700 2080400 3666200 3542200 2760600 3481700 2161100 3668400 278000 4395500 2786200 2390000 2199500 3625500 3537500 2733500 3360500 2 2 2 2 2 2 2 2 2 2 2 329130000 196390000 132740000 2672 1036 2503 15509;15510 18595;18596 18596 2 DGLILTSR Unmodified 873.49198 0.4919813 2578 Q99497 PARK7 Protein deglycase DJ-1 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 42.494 42.533 2 0.0013394 11393 20211116_3431_TMUAki_TMT10x_P_F4 123.72 68.279 26011000 39141000 173930 45057000 41201000 35037000 27236000 27349000 30522000 27287000 34524000 24216000 36544000 2032600 45398000 39133000 36139000 28458000 28193000 31049000 26653000 33180000 7 7 2 7 7 7 7 7 7 7 7 11724000 16367000 0 19620000 25709000 23247000 12808000 12486000 13869000 12516000 15146000 10913000 15284000 793100 19840000 24303000 23217000 13699000 13239000 14109000 12223000 14571000 3 3 0 3 3 3 3 3 3 3 3 14286000 22774000 173930 25436000 15492000 11790000 14428000 14862000 16652000 14771000 19378000 13302000 21260000 1239500 25557000 14830000 12922000 14759000 14953000 16940000 14430000 18609000 4 4 2 4 4 4 4 4 4 4 4 3968500000 2486900000 1481600000 2673 2578 2504 15511;15512;15513;15514;15515;15516 18597;18598;18599;18600;18601;18602;18603 18598 7 DGLLENQTPEFFQDVCKPK Unmodified 2264.0783 0.078333261 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 1 By MS/MS By MS/MS 5.65 1.23 4 4 4 4 1 8 9 68.214 68.299 3;4 1.7769E-18 21893 20211116_3431_TMUAki_TMT10x_P_F4 159.19 145.32 212440000 357820000 1438000 328090000 192270000 269780000 207980000 177140000 168560000 188630000 225650000 197800000 333780000 16755000 335930000 184780000 276350000 208920000 185130000 175230000 183750000 215910000 27 27 16 27 27 27 27 27 27 27 27 118440000 197780000 545940 181170000 112200000 188350000 118960000 98039000 96532000 107400000 125040000 110280000 184490000 8608200 186100000 107750000 189400000 119620000 104520000 100200000 104510000 119740000 14 14 8 14 14 14 14 14 14 14 14 93992000 160050000 892100 146920000 80068000 81431000 89022000 79105000 72028000 81232000 100610000 87520000 149290000 8146600 149830000 77034000 86944000 89305000 80609000 75034000 79247000 96165000 13 13 8 13 13 13 13 13 13 13 13 32271000000 17124000000 15147000000 2674 1092 2505 15517;15518;15519;15520;15521;15522;15523;15524;15525;15526;15527;15528;15529;15530;15531;15532;15533 18604;18605;18606;18607;18608;18609;18610;18611;18612;18613;18614;18615;18616;18617;18618;18619;18620;18621;18622;18623;18624;18625;18626;18627;18628;18629;18630 18606 27 DGLNDDDFEPYLSPQAR Unmodified 1950.8595 0.85954994 3314 Q9Y5A9 YTHDF2 YTH domain-containing family protein 2 yes yes 0 0 0 0 By MS/MS 2 0 1 1 65.176 64.943 3 0.0087173 20416 20211116_3440_TMUAki_TMT10x_S_F2 52.784 47.607 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2675 3314 2506 15534 18631 18631 1 DGMEYPFIGEGEPHVDGEPGDLR Oxidation (M) 2531.0911 0.091082791 3086 Q9UBS4 DNAJB11 DnaJ homolog subfamily B member 11 yes yes 0 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 58.868 58.719 3 1.1815E-11 19651 20211116_3439_TMUAki_TMT10x_S_F1 117.35 109.56 3662100 6376900 44827 5796500 4527100 6304900 4262700 6104000 5544700 5546400 5435000 3410100 5948100 352800 5961900 4336600 6387100 4377300 6199600 5580800 5439800 5246300 3 3 2 3 3 3 3 3 3 3 3 1306700 2194300 0 1959200 1718700 3423800 1778500 2028500 1713900 2031900 1729800 1216600 2046700 109400 2037200 1649100 3366200 1798900 2132900 1747000 1984300 1668200 1 1 0 1 1 1 1 1 1 1 1 2355400 4182500 44827 3837200 2808500 2881100 2484100 4075500 3830700 3514500 3705200 2193400 3901400 243400 3924700 2687400 3020900 2578400 4066600 3833700 3455500 3578100 2 2 2 2 2 2 2 2 2 2 2 860020000 513210000 346800000 2676 3086 2507 15535;15536 18632;18633;18634 18633 3130 3 DGNASGTTLLEALDCILPPTRPTDK Unmodified 2654.3221 0.32214536 1416 P68104;Q5VTE0 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 0 0 0 1 By MS/MS By MS/MS 6.24 1.48 4 3 4 4 6 11 10 79.82 79.822 3;4 5.5873E-38 25303 20211116_3434_TMUAki_TMT10x_P_F6 185.17 162.29 241380000 316720000 3233600 527740000 153520000 162720000 190550000 77026000 79929000 95808000 194510000 224770000 296320000 21094000 518020000 148290000 186360000 187920000 83202000 90220000 92797000 184090000 29 29 23 29 29 29 29 29 29 29 29 120400000 155890000 2355700 258680000 67025000 103010000 78697000 41812000 40872000 47783000 96502000 112120000 145850000 11430000 254310000 64703000 113170000 78044000 45779000 45209000 46421000 91369000 16 16 16 16 16 16 16 16 16 16 16 120990000 160830000 877950 269060000 86498000 59713000 111850000 35214000 39057000 48025000 98013000 112650000 150470000 9663900 263710000 83584000 73194000 109880000 37423000 45011000 46376000 92725000 13 13 7 13 13 13 13 13 13 13 13 54412000000 22486000000 31926000000 2677 1416 2508 15537;15538;15539;15540;15541;15542;15543;15544;15545;15546;15547;15548;15549;15550;15551;15552;15553;15554;15555;15556;15557 18635;18636;18637;18638;18639;18640;18641;18642;18643;18644;18645;18646;18647;18648;18649;18650;18651;18652;18653;18654;18655;18656;18657;18658;18659;18660;18661;18662;18663 18639 29 DGNASGTTLLEALDCILPPTRPTDKPLR Unmodified 3020.5601 0.56008422 1416 P68104;Q5VTE0 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 0 0 0 2 By MS/MS By MS/MS 6.46 2.4 4 3 1 3 8 22 28 13 70.373 70.369 3;4;5 7.1602E-93 24866 20211116_3447_TMUAki_TMT10x_S_F8 272.18 263.56 213810000 351150000 1256400 316180000 188340000 309390000 249050000 168970000 164100000 206990000 231550000 199070000 327530000 13337000 324930000 182060000 312450000 246810000 180020000 173060000 200590000 221280000 75 75 37 75 75 75 75 75 75 75 75 124050000 197790000 818730 172740000 109830000 210880000 136680000 102870000 99073000 124730000 134480000 115490000 184470000 8109100 178570000 105920000 210050000 136070000 110700000 103690000 120910000 128630000 57 57 25 57 57 57 57 57 57 57 57 89759000 153350000 437710 143440000 78508000 98504000 112360000 66101000 65032000 82265000 97067000 83577000 143060000 5227500 146360000 76149000 102390000 110740000 69326000 69367000 79678000 92646000 18 18 12 18 18 18 18 18 18 18 18 142400000000 92546000000 49852000000 2678 1416 2509 15558;15559;15560;15561;15562;15563;15564;15565;15566;15567;15568;15569;15570;15571;15572;15573;15574;15575;15576;15577;15578;15579;15580;15581;15582;15583;15584;15585;15586;15587;15588;15589;15590;15591;15592;15593;15594;15595;15596;15597;15598 18664;18665;18666;18667;18668;18669;18670;18671;18672;18673;18674;18675;18676;18677;18678;18679;18680;18681;18682;18683;18684;18685;18686;18687;18688;18689;18690;18691;18692;18693;18694;18695;18696;18697;18698;18699;18700;18701;18702;18703;18704;18705;18706;18707;18708;18709;18710;18711;18712;18713;18714;18715;18716;18717;18718;18719;18720;18721;18722;18723;18724;18725;18726;18727;18728;18729;18730;18731;18732;18733;18734;18735;18736;18737;18738 18735 75 DGNGYISAAELR Unmodified 1264.6048 0.60477922 599 P0DP25;P0DP24;P0DP23 yes no 0 0 0 0 By MS/MS By MS/MS 2.6 1.02 2 2 4 2 5 5 44.667 44.603 2;3 2.5683E-30 12020 20211116_3440_TMUAki_TMT10x_S_F2 261.35 202.54 16533000 21610000 47326 45242000 28665000 21102000 15384000 17312000 18601000 14431000 21286000 15393000 20253000 1476200 44124000 27147000 22902000 16399000 17707000 18878000 14213000 20450000 8 8 4 8 8 8 8 8 8 8 8 9193100 11563000 2097.2 23573000 25614000 18258000 11339000 10227000 11251000 8212400 11549000 8559000 10834000 900670 23121000 24195000 18748000 12246000 10743000 11460000 8103600 11132000 4 4 1 4 4 4 4 4 4 4 4 7339700 10047000 45228 21669000 3051300 2844100 4044700 7085600 7350100 6218400 9736300 6834200 9418600 575490 21003000 2952400 4153800 4153100 6964100 7417500 6109000 9318400 4 4 3 4 4 4 4 4 4 4 4 2129600000 1331400000 798150000 2679 599 2510 15599;15600;15601;15602;15603;15604;15605;15606;15607;15608 18739;18740;18741;18742;18743;18744;18745;18746;18747 18744 9 DGNVLLHEMQIQHPTASLIAK Oxidation (M) 2330.2053 0.20526511 982 P40227 CCT6A T-complex protein 1 subunit zeta yes yes 0 0 1 0 By MS/MS By MS/MS 6.5 1.12 2 2 2 2 4 4 50.405 50.623 4 5.1632E-14 15596 20211116_3435_TMUAki_TMT10x_P_F7 130.25 105.95 35756000 52763000 240310 55182000 48907000 74349000 38202000 58626000 61562000 55961000 48570000 33291000 49243000 2115100 56410000 46614000 74206000 40033000 60321000 61146000 54764000 47256000 11 11 3 11 11 11 11 11 11 11 11 23355000 31563000 90705 34726000 35200000 61178000 28321000 33924000 36910000 33988000 29213000 21743000 29463000 1119500 35599000 33560000 60080000 29352000 35869000 36901000 33192000 28419000 6 6 1 6 6 6 6 6 6 6 6 12401000 21200000 149600 20455000 13707000 13171000 9881500 24702000 24652000 21973000 19358000 11548000 19779000 995580 20811000 13054000 14126000 10681000 24452000 24245000 21572000 18838000 5 5 2 5 5 5 5 5 5 5 5 8681400000 5004900000 3676600000 2680 982 2511 15609;15610;15611;15612;15613;15614;15615;15616 18748;18749;18750;18751;18752;18753;18754;18755;18756;18757;18758 18751 1261 11 DGNVLLHEMQIQHPTASLIAK Unmodified 2314.2104 0.21035049 982 P40227 CCT6A T-complex protein 1 subunit zeta yes yes 0 0 0 0 By MS/MS By matching 7 0 2 1 1 59.841 60.456 4 1.4775E-26 19536 20211116_3435_TMUAki_TMT10x_P_F7 172.24 156.65 8058000 11842000 213950 14715000 9234900 16464000 9200800 6288100 5133400 6752800 7992000 7504400 11061000 883940 14835000 8867000 16435000 9208600 6920700 5501800 6576000 7621100 1 1 1 1 1 1 1 1 1 1 1 8058000 11842000 213950 14715000 9234900 16464000 9200800 6288100 5133400 6752800 7992000 7504400 11061000 883940 14835000 8867000 16435000 9208600 6920700 5501800 6576000 7621100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2912700000 1916800000 995840000 2681 982 2511 15617;15618 18759 18759 1 DGPGFYTTR Unmodified 1012.4614 0.46140945 992 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 By MS/MS 3 0 1 1 35.97 35.73 2 0.0012326 11326 20211116_3441_TMUAki_TMT10x_S_F3 100.76 70.195 299660 485550 2537.6 636220 306350 257230 305340 418450 514940 317550 487710 279030 453630 27302 632740 293870 289040 316260 414290 513730 314290 471320 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 299660 485550 2537.6 636220 306350 257230 305340 418450 514940 317550 487710 279030 453630 27302 632740 293870 289040 316260 414290 513730 314290 471320 1 1 1 1 1 1 1 1 1 1 1 28709000 0 28709000 2682 992 2512 15619 18760 18760 1 DGPLNMILDDGGDLTNLIHTK Oxidation (M) 2267.1104 0.11036167 786 P23526;P23526-2 AHCY Adenosylhomocysteinase yes no 0 0 1 0 By MS/MS By MS/MS 3.71 1.39 1 2 3 3 4 1 7 7 78.733 78.711 3;4 6.1134E-14 28652 20211116_3441_TMUAki_TMT10x_S_F3 126.9 115.63 80617000 132630000 751120 121380000 77534000 113490000 95861000 72800000 70355000 79746000 96005000 75066000 123720000 7078800 124500000 74833000 115190000 95488000 76279000 73600000 77598000 91819000 17 17 11 17 17 17 17 17 17 17 17 32861000 51493000 275950 46772000 27329000 56266000 34572000 28144000 27320000 31230000 36247000 30598000 48030000 2799400 48191000 26397000 56102000 34465000 30126000 28428000 30374000 34690000 7 7 5 7 7 7 7 7 7 7 7 47756000 81139000 475170 74603000 50205000 57226000 61289000 44656000 43034000 48515000 59758000 44468000 75687000 4279500 76310000 48436000 59088000 61023000 46153000 45172000 47223000 57129000 10 10 6 10 10 10 10 10 10 10 10 25441000000 12317000000 13124000000 2683 786 2513 15620;15621;15622;15623;15624;15625;15626;15627;15628;15629;15630;15631;15632;15633 18761;18762;18763;18764;18765;18766;18767;18768;18769;18770;18771;18772;18773;18774;18775;18776;18777 18771 927 17 DGPLNMILDDGGDLTNLIHTK Unmodified 2251.1154 0.11544705 786 P23526;P23526-2 AHCY Adenosylhomocysteinase yes no 0 0 0 0 By MS/MS By MS/MS 3.75 1.48 2 2 2 2 4 4 79.671 79.644 3 2.1804E-44 26589 20211116_3431_TMUAki_TMT10x_P_F4 203.71 180.61 43152000 62249000 281500 68633000 35483000 41553000 44327000 15721000 11106000 17975000 36853000 40178000 58109000 3467500 69161000 34245000 43421000 43472000 17355000 13665000 17463000 34753000 9 9 4 9 9 9 9 9 9 9 9 31712000 43955000 184190 49011000 24845000 32355000 31620000 10469000 7226100 11758000 25770000 29527000 41034000 2585600 49393000 23996000 33497000 30964000 11788000 9076800 11430000 24285000 6 6 3 6 6 6 6 6 6 6 6 11440000 18294000 97312 19622000 10638000 9197900 12707000 5251600 3879500 6217200 11083000 10651000 17075000 881870 19768000 10248000 9924500 12508000 5567600 4588600 6032200 10469000 3 3 1 3 3 3 3 3 3 3 3 7822300000 4513900000 3308300000 2684 786 2513 15634;15635;15636;15637;15638;15639;15640;15641 18778;18779;18780;18781;18782;18783;18784;18785;18786;18787 18782 10 DGPSLLVVEQVR Unmodified 1310.7194 0.71941505 2188 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 57.334 57.478 2 1.2465E-06 17478 20211116_3431_TMUAki_TMT10x_P_F4 120.96 88.489 4394600 6107900 46861 6920400 5251000 6772100 4658700 3626900 3434900 3868200 5142600 4092200 5702300 420010 7000300 5022800 6837400 4718600 3853500 3608600 3768000 4908000 1 1 1 1 1 1 1 1 1 1 1 4394600 6107900 46861 6920400 5251000 6772100 4658700 3626900 3434900 3868200 5142600 4092200 5702300 420010 7000300 5022800 6837400 4718600 3853500 3608600 3768000 4908000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 422790000 422790000 0 2685 2188 2514 15642;15643 18788;18789 18789 2 DGPVRPQNAEEEKR Unmodified 1623.7965 0.79649617 2335 Q92504 SLC39A7 Zinc transporter SLC39A7 yes yes 0 0 0 2 By MS/MS 3 0 1 1 27.58 27.296 4 2.3052E-14 8010 20211116_3441_TMUAki_TMT10x_S_F3 157.68 130.71 57356 108110 0 61702 90452 79216 109820 79160 74631 70359 69205 53399 100710 4594.6 66486 87176 79619 109300 80224 77271 69078 66927 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57356 108110 0 61702 90452 79216 109820 79160 74631 70359 69205 53399 100710 4594.6 66486 87176 79619 109300 80224 77271 69078 66927 1 1 0 1 1 1 1 1 1 1 1 6532200 0 6532200 2686 2335 2515 15644 18790 18790 1 DGQAMLWDLNEGK Oxidation (M) 1491.6664 0.6663932 1405 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 1 0 By MS/MS By MS/MS 3.6 0.49 2 3 2 3 59.107 59.028 2;3 7.8115E-05 19711 20211116_3430_TMUAki_TMT10x_P_F3 93.478 77.634 17204000 27724000 45705 32292000 22043000 23795000 18848000 12909000 14240000 14474000 19768000 16019000 25886000 1494200 32493000 21056000 24520000 19143000 13721000 14885000 14072000 18898000 5 5 2 5 5 5 5 5 5 5 5 10507000 16818000 6143.3 18931000 16999000 19375000 13779000 8120400 8954800 9318900 11886000 9783200 15701000 950740 19170000 16218000 19458000 13995000 8860200 9425100 9051900 11375000 3 3 1 3 3 3 3 3 3 3 3 6697100 10905000 39562 13361000 5044200 4419600 5069600 4788500 5285600 5155400 7881700 6235800 10185000 543490 13324000 4838000 5062300 5147700 4861000 5459900 5019900 7522800 2 2 1 2 2 2 2 2 2 2 2 1228000000 666700000 561330000 2687 1405 2516 15645;15646;15647;15648;15649 18791;18792;18793;18794;18795;18796 18791 1887 6 DGQAMLWDLNEGK Unmodified 1475.6715 0.67147858 1405 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.707 1 2 1 3 1 66.902 66.99 2;3 6.5099E-25 21816 20211116_3442_TMUAki_TMT10x_S_F4 202.29 180.79 10188000 15323000 111250 18863000 12240000 13371000 13255000 5929600 5605900 6607600 10222000 9486500 14311000 938720 18911000 11766000 13793000 13155000 6424600 6201500 6425400 9718400 2 2 1 2 2 2 2 2 2 2 2 10188000 15323000 111250 18863000 12240000 13371000 13255000 5929600 5605900 6607600 10222000 9486500 14311000 938720 18911000 11766000 13793000 13155000 6424600 6201500 6425400 9718400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 547600000 547600000 0 2688 1405 2516 15650;15651;15652;15653 18797;18798;18799;18800;18801 18801 5 DGQILPVPNVVVR Unmodified 1404.8089 0.80889876 3056 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 0 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 62.516 62.808 2 1.3983E-23 19060 20211116_3445_TMUAki_TMT10x_S_F6 217.78 181.6 27310000 46371000 289660 53920000 31285000 35959000 29788000 32383000 30470000 31770000 35189000 25427000 43298000 2233800 54206000 29955000 37660000 30315000 33087000 31135000 31054000 33800000 6 6 3 6 6 6 6 6 6 6 6 7892000 13466000 115270 15938000 10555000 18164000 10002000 9344300 9067200 9280500 10032000 7348400 12574000 713610 16118000 10108000 18169000 10145000 9943800 9299500 9066400 9647500 2 2 1 2 2 2 2 2 2 2 2 19418000 32906000 174390 37982000 20730000 17795000 19786000 23039000 21402000 22490000 25158000 18079000 30724000 1520200 38088000 19846000 19491000 20169000 23143000 21836000 21987000 24152000 4 4 2 4 4 4 4 4 4 4 4 3340900000 1590500000 1750400000 2689 3056 2517 15654;15655;15656;15657;15658 18802;18803;18804;18805;18806;18807;18808 18806 7 DGQLIATGSADASIK Unmodified 1445.7362 0.73618733 1516 Q05048 CSTF1 Cleavage stimulation factor subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 49.817 49.961 3 1.4798E-06 14817 20211116_3442_TMUAki_TMT10x_S_F4 103.04 80.844 5489100 8112600 0 10779000 9966000 7222000 6399900 5811100 5518200 5335400 7291900 5110800 7579800 509620 10755000 9465700 7545000 6650800 5965300 5715300 5230400 6979300 2 2 0 2 2 2 2 2 2 2 2 2709600 4011200 0 5489900 7389800 5263400 4038500 2900300 2666300 2617800 3889100 2522800 3748400 285110 5492700 7001100 5322800 4229200 3059700 2816000 2568300 3713800 1 1 0 1 1 1 1 1 1 1 1 2779500 4101400 0 5289500 2576100 1958700 2361400 2910800 2851800 2717700 3402800 2588000 3831500 224510 5262400 2464500 2222200 2421600 2905700 2899300 2662200 3265500 1 1 0 1 1 1 1 1 1 1 1 663320000 237160000 426160000 2690 1516 2518 15659;15660 18809;18810 18810 2 DGQPCMDHDRQTGEGVGPQEYTLLK Oxidation (M) 2846.26 0.25995581 3064 Q9P2J5;Q9P2J5-2 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 1 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 43.962 44.085 4 1.8784E-05 13474 20211116_3430_TMUAki_TMT10x_P_F3 73.934 66.488 12176000 21050000 51950 22287000 12051000 11366000 9105100 24345000 26689000 21138000 20137000 11336000 19646000 930250 22486000 11476000 12545000 9934100 24002000 26150000 20776000 19629000 4 4 1 4 4 4 4 4 4 4 4 533810 825090 0 997550 1261800 1632800 807680 888180 1020400 747720 800220 496980 770540 48487 1015000 1198000 1607400 849590 936420 1020900 736050 778760 1 1 0 1 1 1 1 1 1 1 1 11642000 20225000 51950 21290000 10789000 9733700 8297500 23457000 25669000 20390000 19337000 10839000 18876000 881760 21471000 10278000 10937000 9084500 23065000 25129000 20040000 18850000 3 3 1 3 3 3 3 3 3 3 3 986920000 577880000 409030000 2691 3064 2519 15661;15662 18811 18811 3106 1 DGQYILATGTYKPR Unmodified 1581.8151 0.81510635 2648 Q9BSC4;Q9BSC4-2 NOL10 Nucleolar protein 10 yes no 0 0 0 1 By MS/MS 8 0 1 1 46.555 46.674 3 8.0643E-07 12805 20211116_3436_TMUAki_TMT10x_P_F8 118.2 93.858 3365700 5395300 90260 6050500 6676300 7585600 4558000 4942800 4497600 4082300 4799700 3134500 5036800 409530 6149200 6353800 7573600 4732300 5133100 4588900 4022400 4620800 2 2 2 2 2 2 2 2 2 2 2 3365700 5395300 90260 6050500 6676300 7585600 4558000 4942800 4497600 4082300 4799700 3134500 5036800 409530 6149200 6353800 7573600 4732300 5133100 4588900 4022400 4620800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 199310000 199310000 0 2692 2648 2520 15663 18812;18813 18812 2 DGRGALQNIIPASTGAAK Unmodified 1738.9326 0.93259572 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 1 By MS/MS 8 0 1 1 48.45 48.543 3 4.7547E-06 13531 20211116_3436_TMUAki_TMT10x_P_F8 94.384 47.976 4587300 7954400 0 8513700 11287000 13487000 6287300 10656000 8872800 6497500 7626500 4270900 7424400 427290 8720300 10694000 13369000 6719000 10852000 8869200 6517100 7395600 2 2 0 2 2 2 2 2 2 2 2 4587300 7954400 0 8513700 11287000 13487000 6287300 10656000 8872800 6497500 7626500 4270900 7424400 427290 8720300 10694000 13369000 6719000 10852000 8869200 6517100 7395600 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 614430000 614430000 0 2693 489 2521 15664 18814;18815 18814 2 DGSAFEDGLRHPFIVNHPK Unmodified 2135.0548 0.054836123 1242 P55265;P55265-5;P55265-4;P55265-3;P55265-2 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 0 1 By MS/MS By MS/MS 6 1.22 1 2 2 2 1 4 4 45.8 46.003 5 8.9072E-24 11784 20211116_3434_TMUAki_TMT10x_P_F6 168.89 144.61 16917000 27649000 188670 28230000 25700000 31507000 17703000 25468000 24893000 23079000 24647000 15751000 25802000 1502100 28807000 24439000 31759000 18597000 26128000 25001000 22639000 23784000 8 8 4 8 8 8 8 8 8 8 8 11361000 18139000 21152 17657000 19800000 26333000 13600000 16689000 16806000 15692000 16191000 10577000 16924000 885330 18177000 18818000 26074000 14219000 17425000 16935000 15367000 15638000 4 4 1 4 4 4 4 4 4 4 4 5555800 9510100 167520 10573000 5899200 5173800 4102600 8779500 8087000 7386800 8456200 5174200 8877900 616730 10630000 5621100 5684800 4378700 8702700 8065800 7271700 8146000 4 4 3 4 4 4 4 4 4 4 4 5366300000 2694700000 2671600000 2694 1242 2522 15665;15666;15667;15668;15669;15670;15671;15672 18816;18817;18818;18819;18820;18821;18822;18823 18817 8 DGSCGVAYVVQEPGDYEVSVK Unmodified 2257.0209 0.020877961 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 3.8 0.98 1 3 3 3 4 6 63.605 63.468 2;3 6.3655E-44 20411 20211116_3442_TMUAki_TMT10x_S_F4 202.4 189.42 24554000 42528000 126080 40805000 29664000 34751000 27687000 26128000 24938000 25686000 31344000 22861000 39677000 1833700 41659000 28387000 35582000 28102000 26987000 25718000 25104000 30038000 14 14 5 14 14 14 14 14 14 14 14 10277000 17160000 27761 15748000 10635000 19841000 11382000 9974900 9703400 9585600 11927000 9568100 16007000 742370 16226000 10209000 19738000 11454000 10628000 10024000 9377900 11437000 6 6 1 6 6 6 6 6 6 6 6 14276000 25368000 98324 25057000 19029000 14911000 16305000 16153000 15234000 16100000 19417000 13293000 23670000 1091300 25433000 18178000 15844000 16648000 16359000 15694000 15726000 18601000 8 8 4 8 8 8 8 8 8 8 8 8294200000 3596300000 4697900000 2695 755 2523 15673;15674;15675;15676;15677;15678;15679;15680;15681;15682 18824;18825;18826;18827;18828;18829;18830;18831;18832;18833;18834;18835;18836;18837;18838 18835 15 DGSDVIYPAR Unmodified 1091.5247 0.52473799 804 P25685;P25685-2 DNAJB1 DnaJ homolog subfamily B member 1 yes no 0 0 0 0 By MS/MS 2 0 1 1 36.103 36.202 2 0.011141 8610 20211116_3440_TMUAki_TMT10x_S_F2 65.224 38.223 168070 294300 1871.1 318420 158670 136940 164940 134090 169340 151490 229390 156500 274700 15546 320430 152420 150640 167110 137000 174220 147230 219420 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 168070 294300 1871.1 318420 158670 136940 164940 134090 169340 151490 229390 156500 274700 15546 320430 152420 150640 167110 137000 174220 147230 219420 1 1 1 1 1 1 1 1 1 1 1 5839800 0 5839800 2696 804 2524 15683 18839 18839 1 DGSLIVSSSYDGLCR Unmodified 1627.7512 0.75118546 1326 P61964 WDR5 WD repeat-containing protein 5 yes yes 0 0 0 0 By MS/MS 4 0 2 2 55.939 56.09 2;3 8.6089E-100 16880 20211116_3431_TMUAki_TMT10x_P_F4 361.34 337.59 1378800 2204300 0 2105500 1976600 3037200 1788800 1781800 1602600 1688300 1753400 1283800 2056500 114060 2168900 1890000 3008400 1818500 1872200 1643900 1652800 1686700 1 1 0 1 1 1 1 1 1 1 1 1378800 2204300 0 2105500 1976600 3037200 1788800 1781800 1602600 1688300 1753400 1283800 2056500 114060 2168900 1890000 3008400 1818500 1872200 1643900 1652800 1686700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 433270000 433270000 0 2697 1326 2525 15684;15685 18840;18841 18840 2 DGSSLLK Unmodified 718.38612 0.38611924 3371 yes no 0 0 0 0 By MS/MS 4 0 1 1 34.565 34.651 2 0.0381 8702 20211116_3442_TMUAki_TMT10x_S_F4 70.268 0 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2698 3371 2526 15686 18842 18842 1 DGTAGIPNLQLYDVK Unmodified 1602.8253 0.82533668 2723 Q9BY44;Q9BY44-3 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 5.75 0.433 1 3 3 1 69.198 69.286 2;3 1.0263E-19 21843 20211116_3445_TMUAki_TMT10x_S_F6 146.36 112.47 7602600 12333000 0 12377000 10553000 14321000 9447500 6894200 6170500 7259600 8208800 7078300 11509000 614610 12653000 10087000 14302000 9539400 7395300 6493200 7075100 7855700 1 1 0 1 1 1 1 1 1 1 1 7602600 12333000 0 12377000 10553000 14321000 9447500 6894200 6170500 7259600 8208800 7078300 11509000 614610 12653000 10087000 14302000 9539400 7395300 6493200 7075100 7855700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 937070000 937070000 0 2699 2723 2527 15687;15688;15689;15690 18843;18844;18845;18846 18846 4 DGTAGSHFMASPQCVGYSR Oxidation (M) 2042.8575 0.85745822 2804 Q9H488 POFUT1 GDP-fucose protein O-fucosyltransferase 1 yes yes 0 0 1 0 By MS/MS 5.5 0.5 1 1 2 33.873 33.836 3 1.1646E-20 8334 20211116_3433_TMUAki_TMT10x_P_F5 160.43 154 427830 659340 0 875350 1283500 1239800 599370 633950 755260 540180 677140 398310 616040 37421 883200 1213200 1226900 648560 672320 758760 531430 655630 4 4 0 4 4 4 4 4 4 4 4 427830 659340 0 875350 1283500 1239800 599370 633950 755260 540180 677140 398310 616040 37421 883200 1213200 1226900 648560 672320 758760 531430 655630 4 4 0 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 134910000 134910000 0 2700 2804 2528 15691;15692 18847;18848;18849;18850 18848 2958 4 DGTGVVEFVR Unmodified 1077.5455 0.54547343 1543 Q07955;Q07955-3;Q07955-2 SRSF1 Serine/arginine-rich splicing factor 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.22 1.31 1 2 2 2 2 5 4 47.413 47.405 2 9.2211E-19 14852 20211116_3430_TMUAki_TMT10x_P_F3 244.63 185.71 41633000 65851000 247560 78045000 77861000 81065000 50232000 64204000 68732000 58126000 64821000 38765000 61492000 3760900 78803000 73970000 82018000 52970000 65947000 68975000 57019000 62652000 11 11 6 11 11 11 11 11 11 11 11 23443000 35412000 131130 42637000 62647000 65098000 33231000 39052000 41709000 34700000 37141000 21828000 33070000 2538100 43322000 59332000 64346000 35508000 40890000 41899000 34069000 35970000 5 5 4 5 5 5 5 5 5 5 5 18190000 30440000 116420 35408000 15214000 15967000 17001000 25152000 27023000 23425000 27680000 16937000 28422000 1222700 35480000 14637000 17672000 17462000 25057000 27076000 22950000 26682000 6 6 2 6 6 6 6 6 6 6 6 7388900000 4404100000 2984800000 2701 1543 2529 15693;15694;15695;15696;15697;15698;15699;15700;15701 18851;18852;18853;18854;18855;18856;18857;18858;18859;18860;18861;18862 18853 12 DGTGVVEFVRK Unmodified 1205.6404 0.64043645 1543 Q07955;Q07955-3;Q07955-2 SRSF1 Serine/arginine-rich splicing factor 1 yes no 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 44.919 45.046 3 0.00040378 12641 20211116_3433_TMUAki_TMT10x_P_F5 83.573 53.009 12876000 19754000 205330 23423000 19326000 16252000 11708000 14917000 14572000 12519000 16747000 11991000 18446000 1349200 23529000 18351000 16969000 12363000 15163000 14777000 12325000 16088000 4 4 4 4 4 4 4 4 4 4 4 6119800 8651800 91728 10478000 13324000 11498000 6557800 7056200 6847100 5847600 7548100 5698800 8079900 693760 10575000 12611000 11550000 7014600 7362300 6977900 5760800 7259600 2 2 2 2 2 2 2 2 2 2 2 6756400 11102000 113610 12945000 6002000 4753900 5150000 7861200 7725100 6671300 9198900 6291800 10366000 655470 12954000 5740400 5418100 5348200 7800300 7798600 6564500 8828200 2 2 2 2 2 2 2 2 2 2 2 924040000 637990000 286050000 2702 1543 2530 15702;15703;15704;15705 18863;18864;18865;18866 18863 4 DGTSPEEEIEIER Unmodified 1502.6736 0.67364665 2810 Q9H501 ESF1 ESF1 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 43.332 43.234 2 6.5195E-54 13292 20211116_3439_TMUAki_TMT10x_S_F1 311.77 277.05 1853500 2703400 0 3529700 3050100 2684200 1803200 1640000 2010500 1621400 2338100 1725600 2525600 145980 3529900 2891600 2763200 1900700 1719600 2047900 1584300 2245300 2 2 0 2 2 2 2 2 2 2 2 1163200 1610800 0 2212700 2537000 2247900 1323200 911050 1183900 976430 1409500 1082900 1505300 95162 2215300 2400700 2257800 1401300 995710 1218500 950940 1352700 1 1 0 1 1 1 1 1 1 1 1 690250 1092500 0 1317000 513110 436310 479980 729000 826600 644990 928620 642660 1020300 50818 1314600 490910 505390 499330 723910 829380 633390 892650 1 1 0 1 1 1 1 1 1 1 1 210380000 140830000 69552000 2703 2810 2531 15706;15707 18867;18868 18868 2 DGTVLCELINALYPEGQAPVK Unmodified 2286.1566 0.15658358 965 P37802;P37802-2 TAGLN2 Transgelin-2 yes no 0 0 0 0 By MS/MS By MS/MS 6.29 1.45 3 2 4 3 5 5 12 82.259 82.267 3;4 3.5834E-26 29192 20211116_3446_TMUAki_TMT10x_S_F7 161.35 146.58 11992000 18337000 117480 19562000 9489500 14393000 12474000 7221500 8601500 9400300 12307000 11166000 17115000 1018900 19793000 9177900 14821000 12377000 7769500 9051500 9091100 11757000 14 14 8 14 14 14 14 14 14 14 14 7154100 10626000 50828 11321000 5368300 9337900 6234700 4396400 5186500 5585000 7193400 6661200 9917700 565710 11471000 5169000 9524100 6246400 4755000 5393500 5405600 6877100 8 8 2 8 8 8 8 8 8 8 8 4837500 7710900 66657 8241000 4121100 5055500 6239300 2825000 3415000 3815300 5113100 4504700 7197100 453150 8322100 4008800 5296600 6130600 3014500 3658000 3685500 4879900 6 6 6 6 6 6 6 6 6 6 6 1832900000 612530000 1220400000 2704 965 2532 15708;15709;15710;15711;15712;15713;15714;15715;15716;15717;15718;15719;15720;15721;15722;15723;15724 18869;18870;18871;18872;18873;18874;18875;18876;18877;18878;18879;18880;18881;18882;18883;18884;18885;18886 18883 18 DGTVLCELINALYPEGQAPVKK Unmodified 2414.2515 0.2515466 965 P37802;P37802-2 TAGLN2 Transgelin-2 yes no 0 0 0 1 By matching By MS/MS 8 0 2 1 1 80.138 80.133 4 0.00071356 25863 20211116_3447_TMUAki_TMT10x_S_F8 61.703 38.256 2278200 3860000 38469 3795200 2299400 2635400 2722800 1785000 1733100 2173300 2542000 2121500 3601600 225020 3859000 2217800 2737200 2709100 1869400 1835200 2106600 2427100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2278200 3860000 38469 3795200 2299400 2635400 2722800 1785000 1733100 2173300 2542000 2121500 3601600 225020 3859000 2217800 2737200 2709100 1869400 1835200 2106600 2427100 1 1 1 1 1 1 1 1 1 1 1 879630000 510860000 368780000 2705 965 2533 15725;15726 18887 18887 1 DGTVTAGNASGVADGAGAVIIASEDAVK Unmodified 2515.2402 0.24018987 1019 P42765 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 74.527 74.412 3 1.9273E-52 27001 20211116_3441_TMUAki_TMT10x_S_F3 209.4 186.97 14923000 26225000 157190 23228000 18097000 22128000 18622000 16200000 15791000 16966000 19790000 13896000 24460000 1340400 23892000 17369000 22478000 18774000 16793000 16330000 16539000 18967000 8 8 5 8 8 8 8 8 8 8 8 5879800 9211000 46902 7918500 5280300 10723000 6615100 5835200 5931900 6382200 6886300 5475000 8590000 521240 8211400 5099300 10641000 6619000 6195800 6098500 6210700 6613400 3 3 2 3 3 3 3 3 3 3 3 9043500 17014000 110290 15310000 12816000 11406000 12007000 10365000 9859000 10584000 12904000 8420500 15870000 819160 15681000 12270000 11837000 12155000 10597000 10232000 10328000 12354000 5 5 3 5 5 5 5 5 5 5 5 4040600000 2211000000 1829700000 2706 1019 2534 15727;15728;15729;15730;15731;15732;15733;15734 18888;18889;18890;18891;18892;18893;18894;18895;18896;18897 18896 10 DGTVTAGNASGVADGAGAVIIASEDAVKK Unmodified 2643.3352 0.33515289 1019 P42765 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 69.92 69.973 3;4 2.3349E-52 22594 20211116_3431_TMUAki_TMT10x_P_F4 200.09 186.36 40810000 64709000 701600 66786000 43581000 55100000 49088000 28450000 27360000 31091000 45196000 38003000 60388000 4023000 67811000 41965000 56254000 48832000 30350000 29418000 30257000 43047000 9 9 7 9 9 9 9 9 9 9 9 31503000 48685000 415250 49822000 33412000 45687000 39021000 19652000 18742000 21516000 33378000 29335000 45433000 2972400 50685000 32200000 46213000 38659000 21350000 20473000 20937000 31746000 6 6 4 6 6 6 6 6 6 6 6 9306900 16024000 286350 16963000 10169000 9412400 10068000 8798500 8618000 9575300 11818000 8667800 14956000 1050500 17126000 9764900 10041000 10172000 8999900 8944300 9319700 11301000 3 3 3 3 3 3 3 3 3 3 3 2690400000 1667600000 1022900000 2707 1019 2535 15735;15736;15737 18898;18899;18900;18901;18902;18903;18904;18905;18906 18902 9 DGVCVLGLHLAK Unmodified 1280.6911 0.69109181 1929 Q5SRE5;Q5SRE5-2 NUP188 Nucleoporin NUP188 homolog yes no 0 0 0 0 By MS/MS 8 0 1 1 59.064 59.241 3 2.9513E-05 17854 20211116_3436_TMUAki_TMT10x_P_F8 88.187 65.308 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2708 1929 2536 15738 18907 18907 1 DGVGMVEYLR Oxidation (M) 1153.5438 0.54375887 1611 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 yes yes 0 0 1 0 By MS/MS By MS/MS 2.8 0.748 2 2 1 2 3 43.101 43.033 2 0.0068586 14288 20211116_3441_TMUAki_TMT10x_S_F3 77.355 54.284 7268800 11457000 36442 15232000 11374000 9828700 7431700 9750900 13012000 9311500 12046000 6767900 10705000 655410 15191000 10806000 10344000 7917100 9904800 12959000 9112200 11650000 5 5 3 5 5 5 5 5 5 5 5 2112200 3339100 18560 4408600 6552200 5814900 3098700 2939000 3937000 2718300 3429200 1966800 3119700 254600 4443000 6196900 5772500 3349600 3126700 3950500 2663900 3323800 2 2 2 2 2 2 2 2 2 2 2 5156500 8118200 17882 10823000 4821300 4013700 4333000 6811900 9074800 6593200 8616500 4801100 7585300 400800 10748000 4609200 4571800 4567500 6778100 9008300 6448300 8326200 3 3 1 3 3 3 3 3 3 3 3 584200000 292550000 291650000 2709 1611 2537 15739;15740;15741;15742;15743 18908;18909;18910;18911;18912 18911 2161 5 DGVGMVEYLR Unmodified 1137.5488 0.54884425 1611 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 3 1 54.918 54.899 2 2.172E-09 16837 20211116_3442_TMUAki_TMT10x_S_F4 160.82 124.12 5197100 8611900 13357 10280000 10218000 10879000 7538700 4839100 4400600 5057500 6694700 4838800 8042000 464930 10379000 9727500 10910000 7689700 5231400 4695500 4930400 6387200 2 2 1 2 2 2 2 2 2 2 2 5197100 8611900 13357 10280000 10218000 10879000 7538700 4839100 4400600 5057500 6694700 4838800 8042000 464930 10379000 9727500 10910000 7689700 5231400 4695500 4930400 6387200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 829910000 829910000 0 2710 1611 2537 15744;15745;15746;15747 18913;18914;18915;18916 18916 4 DGVLEEQIER Unmodified 1186.583 0.58298115 1554 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 43.06 42.961 2 5.5955E-09 11181 20211116_3428_TMUAki_TMT10x_P_F1 150.18 107.31 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2711 1554 2538 15748;15749 18917;18918 18917 2 DGVLVDEFGLPQIPAS Unmodified 1655.8407 0.8406524 3040 Q9NZZ3 CHMP5 Charged multivesicular body protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 2.4 1.02 1 2 1 1 1 4 81.394 81.373 2 6.6159E-05 28780 20211116_3439_TMUAki_TMT10x_S_F1 89.805 72.813 3958500 6171100 16905 6105900 4561500 4628600 4816000 3751300 3804300 3882100 4864400 3685600 5758000 315680 6211500 4378900 4786700 4840500 3862200 3952100 3786100 4659700 3 3 1 3 3 3 3 3 3 3 3 1054000 1398400 0 1557300 868040 1455200 963540 796300 887320 994420 1249000 981260 1305500 67056 1575900 833570 1474000 970010 848810 918870 963040 1193700 1 1 0 1 1 1 1 1 1 1 1 2904500 4772600 16905 4548600 3693500 3173400 3852500 2955000 2917000 2887700 3615400 2704400 4452500 248620 4635600 3545300 3312700 3870500 3013400 3033200 2823100 3466000 2 2 1 2 2 2 2 2 2 2 2 1315500000 406640000 908860000 2712 3040 2539 15750;15751;15752;15753;15754 18919;18920 18920 2 DGVNKDYEETELISTTANYR Unmodified 2317.071 0.070999276 1595 Q13123 IK Protein Red yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 56.293 55.899 3 1.9617E-32 19592 20211116_3441_TMUAki_TMT10x_S_F3 194.08 189.21 3720400 7912200 41825 5891300 5272700 4960900 3547000 7621000 7199600 7292100 6705500 3464300 7375400 369160 6139000 5014900 5171000 3801200 7604400 7147000 7135400 6483900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3720400 7912200 41825 5891300 5272700 4960900 3547000 7621000 7199600 7292100 6705500 3464300 7375400 369160 6139000 5014900 5171000 3801200 7604400 7147000 7135400 6483900 2 2 2 2 2 2 2 2 2 2 2 355790000 0 355790000 2713 1595 2540 15755;15756;15757 18921;18922;18923;18924 18924 4 DGVREVFEMATR Oxidation (M) 1424.6718 0.67181293 1314 P61586 RHOA Transforming protein RhoA yes yes 0 0 1 1 By MS/MS 4 0 1 1 44.334 44.545 3 0.020458 12581 20211116_3442_TMUAki_TMT10x_S_F4 56.414 40.523 834690 1607600 39751 1630900 878060 895000 863360 1713200 1739300 1468500 1457900 777480 1500200 106860 1651200 843970 975540 903630 1693300 1721200 1444300 1415100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 834690 1607600 39751 1630900 878060 895000 863360 1713200 1739300 1468500 1457900 777480 1500200 106860 1651200 843970 975540 903630 1693300 1721200 1444300 1415100 1 1 1 1 1 1 1 1 1 1 1 74391000 0 74391000 2714 1314 2541 15758 18925 18925 1771 1 DGVSAAVISAELASFLATK Unmodified 1848.9833 0.98329389 2466 Q96G03 PGM2 Phosphoglucomutase-2 yes yes 0 0 0 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 2 2 82.418 82.426 3 2.3394E-32 26782 20211116_3447_TMUAki_TMT10x_S_F8 197.14 178.77 5522600 8969100 47728 10850000 5022300 6582000 6230600 3880300 3596900 4467600 6181500 5142400 8376200 480680 10872000 4848000 6907800 6175300 4099200 3866100 4339100 5883100 5 5 4 5 5 5 5 5 5 5 5 2498900 4427200 10268 5043000 2475900 4043200 2805400 1922100 1888200 2340600 3037300 2326700 4133300 201770 5086200 2381900 4133000 2800000 2073900 2001800 2268700 2894400 2 2 1 2 2 2 2 2 2 2 2 3023700 4541900 37460 5807100 2546500 2538800 3425200 1958200 1708700 2127000 3144200 2815700 4242800 278920 5786000 2466000 2774900 3375300 2025300 1864300 2070400 2988700 3 3 3 3 3 3 3 3 3 3 3 599100000 350720000 248380000 2715 2466 2542 15759;15760;15761;15762 18926;18927;18928;18929;18930 18929 5 DGVTVAK Unmodified 688.37555 0.37555455 613 P10809;P10809-2 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 33.541 33.435 2 0.0041712 10355 20211116_3441_TMUAki_TMT10x_S_F3 114.78 48.98 4463600 7354500 0 6483300 5123100 6464400 4955700 3248100 3670600 3689600 5243800 4155900 6859200 367130 6675300 4907300 6514400 4995700 3477900 3846300 3585200 5009800 2 2 0 2 2 2 2 2 2 2 2 3040500 4837400 0 4428900 3565300 5031100 3169800 2212500 2555200 2556900 3538600 2831000 4512300 254330 4556100 3408300 5024800 3216900 2402100 2661200 2483000 3383100 1 1 0 1 1 1 1 1 1 1 1 1423100 2517000 0 2054400 1557800 1433300 1785900 1035500 1115400 1132700 1705100 1324900 2346900 112800 2119200 1499000 1489500 1778800 1075800 1185000 1102200 1626600 1 1 0 1 1 1 1 1 1 1 1 159000000 100600000 58400000 2716 613 2543 15763;15764 18931;18932 18932 2 DGVYVLDLAAK Unmodified 1162.6234 0.6233894 1200 P53396;P53396-2 ACLY ATP-citrate synthase yes no 0 0 0 0 By MS/MS By MS/MS 4.71 1.03 2 4 4 4 7 7 69.049 68.977 2;3 3.2421E-17 21269 20211116_3434_TMUAki_TMT10x_P_F6 185.29 136.5 90883000 150200000 601750 155560000 105130000 123920000 99348000 107490000 99458000 108910000 115910000 84619000 140170000 7486300 157850000 100640000 127830000 101080000 110160000 101760000 106310000 111310000 15 15 6 15 15 15 15 15 15 15 15 33543000 53402000 107450 55693000 44255000 67703000 40046000 38548000 36166000 40631000 40094000 31230000 49839000 2678900 56834000 42312000 67575000 40721000 40726000 37102000 39596000 38555000 6 6 2 6 6 6 6 6 6 6 6 57340000 96796000 494300 99868000 60875000 56221000 59302000 68945000 63292000 68284000 75819000 53390000 90333000 4807400 101010000 58331000 60252000 60359000 69437000 64658000 66717000 72752000 9 9 4 9 9 9 9 9 9 9 9 7510000000 3790000000 3720000000 2717 1200 2544 15765;15766;15767;15768;15769;15770;15771;15772;15773;15774;15775;15776;15777;15778 18933;18934;18935;18936;18937;18938;18939;18940;18941;18942;18943;18944;18945;18946;18947;18948;18949 18940 17 DGWPAMCIHGDK Unmodified 1385.5856 0.58564046 2368 Q92841;Q92841-3;Q92841-1;Q92841-2 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 0 0 By MS/MS By matching 5 0 2 1 1 48.139 48.311 3 0.02346 13955 20211116_3433_TMUAki_TMT10x_P_F5 49.31 33.738 3061100 4933600 0 6022600 8018200 6529900 4399000 3122600 3129300 2915300 4273500 2850100 4607600 304660 6074700 7596000 6544400 4612000 3340600 3279700 2855800 4087100 1 1 0 1 1 1 1 1 1 1 1 3061100 4933600 0 6022600 8018200 6529900 4399000 3122600 3129300 2915300 4273500 2850100 4607600 304660 6074700 7596000 6544400 4612000 3340600 3279700 2855800 4087100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 291170000 197510000 93657000 2718 2368 2545 15779;15780 18950 18950 1 DGWPAMGIHGDK Oxidation (M) 1298.5714 0.5713706 710 P17844;P17844-2 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 1 0 By MS/MS 4.5 0.5 1 1 2 38.458 38.483 3 0.011735 10079 20211116_3433_TMUAki_TMT10x_P_F5 57.106 42.416 1082700 1744800 537.06 2042800 3206900 2184200 1767500 1093700 1043700 923960 1542300 1008100 1629200 120010 2065100 3038700 2191900 1845700 1162000 1111100 909380 1472300 1 1 1 1 1 1 1 1 1 1 1 1082700 1744800 537.06 2042800 3206900 2184200 1767500 1093700 1043700 923960 1542300 1008100 1629200 120010 2065100 3038700 2191900 1845700 1162000 1111100 909380 1472300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 334870000 334870000 0 2719 710 2546 15781;15782 18951 18951 791 1 DGYDYDGYR Unmodified 1122.4254 0.42541787 1543 Q07955;Q07955-3;Q07955-2 SRSF1 Serine/arginine-rich splicing factor 1 yes no 0 0 0 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 36.537 36.449 2 6.1728E-06 8628 20211116_3428_TMUAki_TMT10x_P_F1 180.87 150.7 1523800 2541900 18770 3563700 10293000 3036000 1810400 1872700 3127300 1553000 3260000 1418800 2375600 256180 3555500 9656200 3099200 2320600 1953100 3128500 1529900 3140700 4 4 2 4 4 4 4 4 4 4 4 959280 1611700 12098 2206000 9745700 2570000 1242900 1153300 2032100 978190 2039600 893240 1506200 209090 2213900 9131300 2563900 1729800 1238800 2033000 962570 1967300 2 2 1 2 2 2 2 2 2 2 2 564480 930100 6672.3 1357800 546910 465920 567460 719400 1095200 574810 1220400 525590 869480 47096 1341600 524960 535360 590860 714310 1095500 567340 1173400 2 2 1 2 2 2 2 2 2 2 2 187270000 130550000 56719000 2720 1543 2547 15783;15784;15785;15786;15787 18952;18953;18954;18955 18952 4 DHASIQMNVAEVDK Oxidation (M) 1571.725 0.72497071 1403 P63220 RPS21 40S ribosomal protein S21 yes yes 0 0 1 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 35.241 35.315 3 0.00064186 7966 20211116_3445_TMUAki_TMT10x_S_F6 75.764 63.618 65417 101520 0 127640 51456 39406 46480 40448 43468 39357 82175 60890 94830 2826.8 127050 49057 45609 47313 41039 45726 38483 78073 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 65417 101520 0 127640 51456 39406 46480 40448 43468 39357 82175 60890 94830 2826.8 127050 49057 45609 47313 41039 45726 38483 78073 1 1 0 1 1 1 1 1 1 1 1 5452200 3190400 2261800 2721 1403 2548 15788;15789;15790 18956;18957 18957 1881 2 DHASIQMNVAEVDKVTGR Oxidation (M) 1984.9636 0.96363785 1403 P63220 RPS21 40S ribosomal protein S21 yes yes 0 0 1 1 By MS/MS By MS/MS 5.5 0.957 1 2 2 1 5 1 39.715 39.83 3;4 1.7504E-12 10686 20211116_3433_TMUAki_TMT10x_P_F5 137.27 125.25 6426300 10594000 141030 11896000 15962000 19192000 9377200 11607000 12272000 9776100 9746800 5984200 9890200 749960 12153000 15145000 18931000 9945600 12129000 12268000 9623300 9480500 10 10 5 10 10 10 10 10 10 10 10 5790400 9552900 141030 10512000 15380000 18690000 8962400 10506000 11145000 8880200 8784000 5392200 8917500 715580 10779000 14592000 18352000 9494100 11046000 11159000 8739900 8546700 9 9 5 9 9 9 9 9 9 9 9 635920 1041100 0 1384200 582850 501860 414730 1100300 1126400 895930 962810 591960 972770 34377 1374600 553500 579130 451510 1082400 1109000 883430 933860 1 1 0 1 1 1 1 1 1 1 1 1248800000 1077900000 170970000 2722 1403 2549 15791;15792;15793;15794;15795;15796 18958;18959;18960;18961;18962;18963;18964;18965;18966;18967 18960 1881 10 DHASIQMNVAEVDKVTGR Unmodified 1968.9687 0.96872323 1403 P63220 RPS21 40S ribosomal protein S21 yes yes 0 0 0 1 By MS/MS 7 0 1 1 45.719 46.225 4 5.1304E-32 14289 20211116_3446_TMUAki_TMT10x_S_F7 197.75 180.01 4545800 8195800 75218 7748500 4603900 3338900 3881700 4590000 4131800 4115200 5811300 4233200 7645900 447790 7870400 4400900 3701600 3982900 4589500 4252000 4038700 5554000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4545800 8195800 75218 7748500 4603900 3338900 3881700 4590000 4131800 4115200 5811300 4233200 7645900 447790 7870400 4400900 3701600 3982900 4589500 4252000 4038700 5554000 2 2 2 2 2 2 2 2 2 2 2 736590000 0 736590000 2723 1403 2549 15797 18968;18969 18968 2 DHAVFTR Unmodified 844.41915 0.4191507 889 P31689;P31689-2 DNAJA1 DnaJ homolog subfamily A member 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 27.603 27.342 3 0.011531 8071 20211116_3441_TMUAki_TMT10x_S_F3 79.451 65.676 368030 597060 6602.5 528800 365220 430670 381390 302860 322350 280940 403600 342700 556870 34735 542810 350870 441910 384180 313720 333400 275280 386830 2 2 1 2 2 2 2 2 2 2 2 220990 334150 0 273250 197640 269720 189510 162840 180420 156360 216440 205750 311570 16104 283010 189170 272590 192370 170770 185220 152970 207670 1 1 0 1 1 1 1 1 1 1 1 147040 262910 6602.5 255550 167580 160950 191880 140010 141930 124580 187170 136960 245300 18632 259800 161700 169330 191820 142950 148180 122310 179150 1 1 1 1 1 1 1 1 1 1 1 28441000 5188600 23252000 2724 889 2550 15798;15799 18970;18971 18971 2 DHAVVVGVYRPPPK Unmodified 1532.8463 0.8463469 765 P22087 FBL rRNA 2'-O-methyltransferase fibrillarin yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 29.755 29.823 4 0.00016597 8237 20211116_3428_TMUAki_TMT10x_P_F1 88.552 81.384 11375000 17677000 183620 19296000 21904000 21832000 14844000 13363000 14258000 12328000 15632000 10593000 16500000 1259400 19609000 20836000 21894000 15408000 13983000 14579000 12083000 15037000 6 6 4 6 6 6 6 6 6 6 6 9325200 14517000 154610 15920000 20010000 20123000 12579000 11420000 12136000 10416000 13076000 8683900 13551000 1064600 16205000 19009000 20046000 13134000 12020000 12399000 10214000 12584000 4 4 2 4 4 4 4 4 4 4 4 2050200 3159700 29005 3376200 1893900 1708800 2265700 1943300 2121400 1911700 2556500 1909100 2949200 194820 3404100 1827100 1848900 2274300 1963000 2179900 1868400 2452700 2 2 2 2 2 2 2 2 2 2 2 1541200000 764630000 776570000 2725 765 2551 15800;15801;15802;15803 18972;18973;18974;18975;18976;18977 18973 6 DHENIVIAK Unmodified 1037.5506 0.55055881 533 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 35.399 35.291 3 0.0015671 8517 20211116_3431_TMUAki_TMT10x_P_F4 79.986 50.638 1890900 2599900 1948.7 3268800 2057500 2090000 1824100 991300 1239700 1119600 2029400 1760600 2428500 153320 3269900 1966600 2177200 1844400 1067200 1314800 1088100 1933300 2 2 1 2 2 2 2 2 2 2 2 1329400 1771300 0 2239800 1567700 1702200 1200900 680790 864080 768680 1413900 1237800 1654600 105960 2243800 1493500 1744300 1226900 746360 913300 747110 1346900 1 1 0 1 1 1 1 1 1 1 1 561540 828600 1948.7 1029000 489800 387740 623230 310510 375620 350870 615510 522860 773920 47367 1026000 473110 432830 617530 320810 401480 341020 586340 1 1 1 1 1 1 1 1 1 1 1 131400000 93031000 38372000 2726 533 2552 15804;15805 18978;18979 18978 2 DHFEEAMR Oxidation (M) 1049.4236 0.42364373 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 1 0 By MS/MS 2 0 1 1 24.224 23.996 3 0.051039 5250 20211116_3429_TMUAki_TMT10x_P_F2 42.075 36.487 246900 332570 7014.6 251740 168390 292440 145790 157010 160560 146790 224270 229940 310020 25907 263130 161320 292370 149520 166170 164960 143790 214370 1 1 1 1 1 1 1 1 1 1 1 246900 332570 7014.6 251740 168390 292440 145790 157010 160560 146790 224270 229940 310020 25907 263130 161320 292370 149520 166170 164960 143790 214370 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4064600 4064600 0 2727 1235 2553 15806 18980 18980 1668 1 DHFGRPPVDIR Unmodified 1307.6735 0.67346791 3208 Q9UPN6;Q9UPN6-2 SCAF8 Protein SCAF8 yes no 0 0 0 1 By MS/MS 5 0 1 1 33.291 33.237 4 0.004501 8005 20211116_3433_TMUAki_TMT10x_P_F5 68.563 52.673 366560 540980 46156 585250 836530 851400 510260 526370 504830 431160 503370 341640 504960 79988 597910 796690 843630 534470 548730 513770 425010 485630 1 1 1 1 1 1 1 1 1 1 1 366560 540980 46156 585250 836530 851400 510260 526370 504830 431160 503370 341640 504960 79988 597910 796690 843630 534470 548730 513770 425010 485630 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 41365000 41365000 0 2728 3208 2554 15807 18981 18981 1 DHGGALGPEEFK Unmodified 1255.5833 0.5833155 235 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 By MS/MS 4 0 1 1 37.841 37.998 3 4.9311E-05 9873 20211116_3442_TMUAki_TMT10x_S_F4 98.105 72.213 175870 251430 0 345980 156830 124390 165010 145400 165220 133310 248420 163750 234970 13624 342970 150540 140860 166950 146410 171020 130690 237060 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 175870 251430 0 345980 156830 124390 165010 145400 165220 133310 248420 163750 234970 13624 342970 150540 140860 166950 146410 171020 130690 237060 1 1 0 1 1 1 1 1 1 1 1 15227000 0 15227000 2729 235 2555 15808 18982 18982 1 DHIIDDALVR Unmodified 1165.6091 0.60913632 1517 Q05086;Q05086-2;Q05086-3 UBE3A Ubiquitin-protein ligase E3A yes no 0 0 0 0 By MS/MS 3 0 1 1 42.106 42.16 3 0.0085811 12779 20211116_3430_TMUAki_TMT10x_P_F3 65.278 51.283 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2730 1517 2556 15809 18983 18983 1 DHIMEIFSTYGK Oxidation (M) 1455.6704 0.67041595 1785 Q15287;Q15287-3;Q15287-2 RNPS1 RNA-binding protein with serine-rich domain 1 yes no 0 0 1 0 By MS/MS By MS/MS 6.29 1.03 2 2 2 1 3 4 54.766 54.923 3 2.6159E-07 17275 20211116_3435_TMUAki_TMT10x_P_F7 106.49 95.662 20687000 37580000 548640 39412000 26516000 35459000 23002000 34113000 36402000 33601000 31430000 19266000 35073000 2308100 40018000 25369000 36337000 23930000 34736000 36270000 32838000 30473000 5 5 5 5 5 5 5 5 5 5 5 7452100 12446000 262060 12858000 12113000 20182000 10426000 12344000 12418000 11813000 10582000 6940600 11615000 927350 13197000 11588000 19933000 10725000 12930000 12481000 11559000 10265000 2 2 2 2 2 2 2 2 2 2 2 13235000 25134000 286580 26554000 14402000 15277000 12576000 21769000 23984000 21788000 20848000 12325000 23458000 1380700 26820000 13781000 16404000 13205000 21806000 23789000 21279000 20208000 3 3 3 3 3 3 3 3 3 3 3 2598400000 961930000 1636500000 2731 1785 2557 15810;15811;15812;15813;15814;15815;15816 18984;18985;18986;18987;18988;18989;18990;18991 18987 2398 8 DHIMEIFSTYGK Unmodified 1439.6755 0.67550132 1785 Q15287;Q15287-3;Q15287-2 RNPS1 RNA-binding protein with serine-rich domain 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 64.789 65.087 3 6.8153E-05 21995 20211116_3446_TMUAki_TMT10x_S_F7 96.334 81.068 28567000 50358000 450920 52226000 31659000 35487000 34472000 18227000 15483000 20037000 32436000 26599000 46997000 2464300 52897000 30430000 36796000 34232000 19457000 17184000 19495000 30765000 4 4 2 4 4 4 4 4 4 4 4 15996000 27657000 107970 27369000 18869000 24672000 20797000 10077000 8398500 10708000 17303000 14892000 25806000 1176100 27901000 18128000 24973000 20611000 11001000 9402600 10432000 16416000 2 2 1 2 2 2 2 2 2 2 2 12571000 22701000 342940 24857000 12790000 10815000 13675000 8149600 7084500 9329600 15133000 11707000 21190000 1288200 24996000 12302000 11823000 13621000 8455700 7781200 9063100 14349000 2 2 1 2 2 2 2 2 2 2 2 2334600000 1284200000 1050300000 2732 1785 2557 15817;15818;15819;15820 18992;18993;18994;18995 18994 4 DHINLPGFSGQNPLRGPNDER Unmodified 2332.1309 0.13085461 469 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 0 1 By MS/MS By MS/MS 6 0.707 1 2 1 1 3 49.932 50.162 4 1.1113E-07 13538 20211116_3434_TMUAki_TMT10x_P_F6 98.132 80.913 10344000 18035000 155730 17464000 11877000 13382000 10125000 11870000 11650000 11703000 13525000 9632100 16826000 1002500 17795000 11352000 13850000 10409000 12140000 11852000 11437000 12989000 5 5 4 5 5 5 5 5 5 5 5 4952000 8216600 80575 7685900 6357300 8598200 5139000 4990100 5007300 4996800 6221100 4611200 7665000 483620 7892000 6068500 8621900 5272300 5255900 5142900 4879800 5963700 2 2 1 2 2 2 2 2 2 2 2 5391800 9818300 75155 9778000 5519900 4783700 4985500 6879500 6642700 6706500 7303600 5020900 9161400 518860 9903400 5283900 5228500 5136300 6883700 6708800 6557000 7025100 3 3 3 3 3 3 3 3 3 3 3 2790300000 758340000 2032000000 2733 469 2558 15821;15822;15823;15824 18996;18997;18998;18999;19000 18997 5 DHLVTAYNHLFETK Unmodified 1686.8366 0.83657007 1472 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 0 0 0 0 By MS/MS By MS/MS 6.1 2.12 2 1 5 2 6 4 51.551 51.717 3;4 6.2107E-19 16500 20211116_3446_TMUAki_TMT10x_S_F7 163.99 153.67 54410000 86715000 639700 107520000 60868000 57965000 51967000 51171000 52402000 48091000 63009000 50663000 80992000 4911900 107480000 58160000 61955000 53191000 52278000 53668000 47095000 60454000 13 13 8 13 13 13 13 13 13 13 13 16050000 25531000 190810 32408000 26205000 29744000 18102000 14280000 14258000 14104000 17231000 14945000 23849000 1599500 32536000 24931000 30118000 18666000 15294000 14779000 13782000 16531000 5 5 3 5 5 5 5 5 5 5 5 38360000 61184000 448900 75113000 34663000 28221000 33865000 36891000 38144000 33987000 45777000 35718000 57143000 3312500 74943000 33228000 31837000 34525000 36984000 38889000 33313000 43923000 8 8 5 8 8 8 8 8 8 8 8 6428400000 3272200000 3156300000 2734 1472 2559 15825;15826;15827;15828;15829;15830;15831;15832;15833;15834 19001;19002;19003;19004;19005;19006;19007;19008;19009;19010;19011;19012;19013;19014;19015 19012 15 DHPAVAATLNNLAVLYGK Unmodified 1865.9999 0.99994701 2770;1541 Q07866;Q07866-4;Q07866-6;Q07866-7;Q07866-2;Q07866-8;Q07866-3;Q07866-5;Q07866-10;Q07866-9;Q9H0B6;Q9H0B6-2 KLC1;KLC2 Kinesin light chain 1;Kinesin light chain 2 no no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 70.764 70.601 3 2.0571E-15 23990 20211116_3429_TMUAki_TMT10x_P_F2 132.84 105.5 3177100 5609800 104120 5358600 4463900 5660100 4399400 7269700 6345600 6669100 5800300 2959000 5233600 378460 5488900 4284800 5783700 4526100 7292100 6351000 6538100 5612200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3177100 5609800 104120 5358600 4463900 5660100 4399400 7269700 6345600 6669100 5800300 2959000 5233600 378460 5488900 4284800 5783700 4526100 7292100 6351000 6538100 5612200 1 1 1 1 1 1 1 1 1 1 1 555730000 0 555730000 2735 1541;2770 2560 15835;15836 19016;19017 19016 2 DHPFGFVAVPTK Unmodified 1313.6768 0.67682195 1408 P63279 UBE2I SUMO-conjugating enzyme UBC9 yes yes 0 0 0 0 By MS/MS By MS/MS 7.14 0.833 2 2 3 3 4 53.927 54.171 3 4.3815E-08 15793 20211116_3436_TMUAki_TMT10x_P_F8 138.24 127.71 58921000 93053000 581200 125030000 74715000 72128000 58061000 45067000 53034000 50362000 68768000 54864000 86947000 5438400 124500000 71243000 76134000 59609000 47345000 54731000 48968000 65851000 9 9 7 9 9 9 9 9 9 9 9 31728000 48577000 226160 65007000 52414000 55120000 36836000 24749000 28234000 26779000 34005000 29542000 45389000 2921500 65009000 49865000 56080000 37912000 26757000 29304000 26071000 32625000 5 5 3 5 5 5 5 5 5 5 5 27193000 44475000 355040 60024000 22301000 17008000 21225000 20318000 24800000 23583000 34763000 25322000 41558000 2516800 59493000 21378000 20054000 21697000 20588000 25427000 22897000 33226000 4 4 4 4 4 4 4 4 4 4 4 13521000000 7352000000 6169000000 2736 1408 2561 15837;15838;15839;15840;15841;15842;15843 19018;19019;19020;19021;19022;19023;19024;19025;19026;19027 19021 10 DHPHTAAYLQELGR Unmodified 1606.7852 0.7852032 1974 Q6GMV3 PTRHD1 Putative peptidyl-tRNA hydrolase PTRHD1 yes yes 0 0 0 0 By matching By MS/MS 4.5 0.5 1 1 1 1 34.018 34.119 4 1.5191E-07 7017 20211116_3444_TMUAki_TMT10x_S_F5 120.87 104.93 200120 327620 2023.1 364100 231410 207280 215340 249170 246730 270130 285640 186340 305840 18915 366520 221600 221780 220240 251860 251020 262960 274350 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 200120 327620 2023.1 364100 231410 207280 215340 249170 246730 270130 285640 186340 305840 18915 366520 221600 221780 220240 251860 251020 262960 274350 1 1 1 1 1 1 1 1 1 1 1 119520000 93929000 25591000 2737 1974 2562 15844;15845 19028 19028 1 DHPLPEVAHVK Unmodified 1240.6564 0.65642086 650 P13073 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4.57 0.495 3 4 5 2 29.338 29.362 3;4 1.3972E-06 8016 20211116_3433_TMUAki_TMT10x_P_F5 124.1 100.87 5741200 9465700 112360 8849300 8829400 8449000 6190000 4517100 4729100 4330200 6878800 5346300 8830200 608810 9065300 8405500 8543600 6371600 4785500 4951300 4236800 6569200 6 6 5 6 6 6 6 6 6 6 6 4662300 7728300 87444 7082500 7696100 7329600 4889500 3530900 3734400 3452200 5441700 4341600 7208900 495380 7274700 7313100 7366300 5070600 3779300 3910300 3374800 5196600 4 4 3 4 4 4 4 4 4 4 4 1078900 1737400 24913 1766700 1133300 1119500 1300500 986150 994680 878000 1437100 1004700 1621300 113430 1790600 1092400 1177400 1301000 1006100 1041000 861950 1372600 2 2 2 2 2 2 2 2 2 2 2 1148400000 799600000 348830000 2738 650 2563 15846;15847;15848;15849;15850;15851;15852 19029;19030;19031;19032;19033 19030 5 DHQPAPYSAVPYK Unmodified 1471.7096 0.70957864 136 O14813 PHOX2A Paired mesoderm homeobox protein 2A yes yes 0 0 0 0 By MS/MS 6 0 1 1 37.629 37.625 3 0.023826 8510 20211116_3434_TMUAki_TMT10x_P_F6 51.727 27.741 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2739 136 2564 15853 19034 19034 1 DHQPCIIFMDEIDAIGGR Oxidation (M) 2101.9561 0.95610963 1357 P62333 PSMC6 26S protease regulatory subunit 10B yes yes 0 0 1 0 By MS/MS 1 0 1 1 66.43 66.43 3 0.0088037 20727 20211116_3428_TMUAki_TMT10x_P_F1 49.528 41.803 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2740 1357 2565 15854 19035 19035 1817 1 DHQTITIQEMPEK Oxidation (M) 1584.7454 0.7453718 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 1 0 By MS/MS 3 0 1 1 35.041 34.801 3 0.061919 10931 20211116_3441_TMUAki_TMT10x_S_F3 41.621 21.782 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2741 799 2566 15855 19036 19036 942 1 DHQYQFLEDAVR Unmodified 1519.7056 0.7055559 1615 Q13263;Q13263-2 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 0 By MS/MS By MS/MS 3.58 1.11 2 4 4 1 1 5 7 48.425 48.348 2;3 7.688E-17 15315 20211116_3430_TMUAki_TMT10x_P_F3 213.63 189.54 29646000 49017000 936570 59634000 47993000 49119000 33252000 56724000 53154000 44108000 49419000 27610000 45777000 3559900 59929000 45702000 50859000 35116000 56912000 53072000 43598000 47789000 14 14 12 14 14 14 14 14 14 14 14 12057000 19095000 377330 22989000 30797000 34511000 19067000 23310000 22053000 17771000 19337000 11229000 17833000 1598500 23349000 29256000 34195000 20047000 24099000 22208000 17584000 18738000 5 5 4 5 5 5 5 5 5 5 5 17589000 29921000 559240 36646000 17196000 14608000 14185000 33414000 31102000 26338000 30083000 16381000 27945000 1961400 36580000 16445000 16664000 15069000 32812000 30864000 26014000 29051000 9 9 8 9 9 9 9 9 9 9 9 6870200000 3831600000 3038500000 2742 1615 2567 15856;15857;15858;15859;15860;15861;15862;15863;15864;15865;15866;15867 19037;19038;19039;19040;19041;19042;19043;19044;19045;19046;19047;19048;19049;19050;19051;19052;19053 19040 17 DHRDNLEFFLAGIGR Unmodified 1758.8802 0.88016622 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 1 By MS/MS By MS/MS 6.75 0.433 1 3 2 2 61.825 62.375 3;4 3.4159E-15 20344 20211116_3435_TMUAki_TMT10x_P_F7 159.14 134.2 13981000 23358000 138210 23374000 15838000 18134000 13133000 16060000 17275000 15855000 17373000 13018000 21795000 1300600 23766000 15126000 18750000 13591000 16427000 17397000 15493000 16756000 4 4 3 4 4 4 4 4 4 4 4 3726000 6139500 96024 6293400 5757300 7964500 4370000 4366200 4725500 4219100 4443300 3470000 5729400 426850 6434400 5491400 7929800 4516300 4616500 4781800 4126600 4295000 1 1 1 1 1 1 1 1 1 1 1 10255000 17218000 42183 17081000 10081000 10169000 8762900 11694000 12550000 11636000 12930000 9548300 16066000 873780 17332000 9634300 10820000 9074700 11811000 12615000 11367000 12461000 3 3 2 3 3 3 3 3 3 3 3 1901400000 841750000 1059600000 2743 1092 2568 15868;15869;15870;15871 19054;19055;19056;19057;19058 19055 5 DHTLVQTIAR Unmodified 1152.6251 0.62512073 1724 Q14684;Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 33.296 33.341 3 0.0026342 8192 20211116_3433_TMUAki_TMT10x_P_F5 72.922 60.295 1271800 2024100 13288 2193500 2309900 2021300 1514800 1087100 1231200 1162600 1764300 1184200 1889300 132360 2223200 2195600 2048800 1569300 1154700 1283800 1132400 1685400 3 3 3 3 3 3 3 3 3 3 3 801320 1276600 741.8 1291600 1771400 1619800 995190 711140 875820 756550 1123200 746120 1191200 80713 1321500 1679000 1609500 1046400 770260 905000 737010 1075800 1 1 1 1 1 1 1 1 1 1 1 470440 747500 12546 901910 538480 401490 519570 375980 355350 406060 641090 438120 698080 51648 901700 516610 439310 522930 384460 378830 395340 609590 2 2 2 2 2 2 2 2 2 2 2 93408000 83745000 9663600 2744 1724 2569 15872;15873;15874 19059;19060;19061 19059 3 DHVFLCEGEEPK Unmodified 1458.6449 0.64492948 2834 Q9H910;Q9H910-3;Q9H910-2 HN1L Hematological and neurological expressed 1-like protein yes no 0 0 0 0 By MS/MS 3 0 1 1 39.476 39.53 3 0.02346 11474 20211116_3430_TMUAki_TMT10x_P_F3 49.31 35.404 119970 171440 5583 273630 324370 231420 146410 117390 116640 97327 145880 111750 160360 18012 271300 306880 235800 156900 124510 121000 95881 139820 1 1 1 1 1 1 1 1 1 1 1 119970 171440 5583 273630 324370 231420 146410 117390 116640 97327 145880 111750 160360 18012 271300 306880 235800 156900 124510 121000 95881 139820 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14534000 14534000 0 2745 2834 2570 15875 19062 19062 1 DHVFLCEGEEPKSDLK Unmodified 1901.8829 0.88292792 2834 Q9H910;Q9H910-3;Q9H910-2 HN1L Hematological and neurological expressed 1-like protein yes no 0 0 0 1 By MS/MS By MS/MS 3.71 1.03 1 2 2 2 4 3 44.933 44.931 4 4.1511E-07 11504 20211116_3444_TMUAki_TMT10x_S_F5 103.13 78.078 21345000 32762000 68372 43048000 37945000 34028000 22023000 30601000 32030000 26484000 30944000 19873000 30609000 1836900 43055000 35973000 35145000 23481000 31163000 32108000 26036000 29884000 7 7 2 7 7 7 7 7 7 7 7 9606900 13978000 2902.7 18016000 29404000 25235000 13672000 13349000 13732000 11676000 12850000 8944400 13058000 1000000 18202000 27794000 24996000 14692000 14122000 13936000 11472000 12423000 3 3 1 3 3 3 3 3 3 3 3 11738000 18784000 65470 25032000 8541000 8792900 8351800 17252000 18298000 14809000 18094000 10928000 17551000 836860 24852000 8178800 10149000 8789400 17041000 18172000 14564000 17461000 4 4 1 4 4 4 4 4 4 4 4 2193000000 1359700000 833300000 2746 2834 2571 15876;15877;15878;15879;15880;15881;15882 19063;19064;19065;19066;19067;19068;19069 19069 7 DHVYLQLHHLPPEQLATR Unmodified 2166.1334 0.13342079 882 P31040;P31040-3;P31040-2 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 0 0 0 0 By MS/MS 6 0 1 1 39.938 39.955 4 6.9692E-06 9626 20211116_3434_TMUAki_TMT10x_P_F6 89.049 77.436 765650 1346200 11800 1562200 1996500 2115300 1251000 1291700 1276500 1004400 1241100 712990 1257000 91714 1586800 1896400 2102300 1308700 1346200 1296200 992760 1198300 1 1 1 1 1 1 1 1 1 1 1 765650 1346200 11800 1562200 1996500 2115300 1251000 1291700 1276500 1004400 1241100 712990 1257000 91714 1586800 1896400 2102300 1308700 1346200 1296200 992760 1198300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 114850000 114850000 0 2747 882 2572 15883 19070 19070 1 DIAAHIK Unmodified 766.43374 0.43373813 1399 P63167 DYNLL1 Dynein light chain 1, cytoplasmic yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 33.452 33.63 3 0.0077786 8355 20211116_3433_TMUAki_TMT10x_P_F5 81.784 27.376 2530700 3917300 50464 3541300 2596900 2730800 3631500 1550600 1733300 1946400 2817500 2356700 3653900 257770 3627100 2519100 2805400 3570700 1648000 1884900 1884700 2684400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2530700 3917300 50464 3541300 2596900 2730800 3631500 1550600 1733300 1946400 2817500 2356700 3653900 257770 3627100 2519100 2805400 3570700 1648000 1884900 1884700 2684400 1 1 1 1 1 1 1 1 1 1 1 85105000 0 85105000 2748 1399 2573 15884;15885 19071;19072 19071 2 DIAAYIKK Unmodified 920.53312 0.53311783 2461 Q96FJ2 DYNLL2 Dynein light chain 2, cytoplasmic yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 3 2 1 50.947 50.972 3 0.00076748 14513 20211116_3436_TMUAki_TMT10x_P_F8 121.96 70.102 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2749 2461 2574 15886;15887;15888 19073;19074;19075 19073 3 DIAINISR Unmodified 900.50288 0.50288033 2015 Q6QNY1;Q6QNY1-2 BLOC1S2 Biogenesis of lysosome-related organelles complex 1 subunit 2 yes no 0 0 0 0 By MS/MS 4 0 1 1 44.976 45.187 2 0.012029 12819 20211116_3442_TMUAki_TMT10x_S_F4 78.264 32.525 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2750 2015 2575 15889 19076 19076 1 DIAPPPEECLQLLSR Unmodified 1736.8767 0.87672033 2584 Q99567 NUP88 Nuclear pore complex protein Nup88 yes yes 0 0 0 0 By MS/MS 3 0 1 1 66.957 66.495 3 5.1016E-07 23884 20211116_3441_TMUAki_TMT10x_S_F3 102.38 82.8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2751 2584 2576 15890 19077 19077 1 DICNDVLSLLEK Unmodified 1417.7123 0.71228076 1395 P63104 YWHAZ 14-3-3 protein zeta/delta yes yes 0 0 0 0 By MS/MS By MS/MS 5 1.35 2 2 3 2 2 6 5 79.945 79.934 2;3 5.1179E-12 25787 20211116_3444_TMUAki_TMT10x_S_F5 128.54 103.77 30037000 48674000 360250 48711000 27666000 44506000 37341000 22184000 21637000 30529000 33795000 27969000 45418000 2699700 49628000 26787000 45097000 36885000 23932000 23131000 29472000 32224000 8 8 5 8 8 8 8 8 8 8 8 16416000 25978000 48997 26356000 15569000 27472000 18459000 12229000 11832000 16536000 19283000 15284000 24242000 1301600 26878000 14998000 27575000 18368000 13332000 12591000 15972000 18371000 4 4 1 4 4 4 4 4 4 4 4 13621000 22696000 311260 22355000 12097000 17034000 18882000 9955400 9805900 13993000 14512000 12685000 21176000 1398000 22750000 11789000 17522000 18517000 10600000 10540000 13500000 13854000 4 4 4 4 4 4 4 4 4 4 4 7478800000 3464600000 4014200000 2752 1395 2577 15891;15892;15893;15894;15895;15896;15897;15898;15899;15900;15901 19078;19079;19080;19081;19082;19083;19084;19085;19086;19087;19088 19087 11 DIDAFWLQR Unmodified 1162.5771 0.57710791 352 O75643;O75643-2 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 0 0 0 0 By MS/MS 5 0 1 1 71.351 71.415 2 0.0015722 23410 20211116_3433_TMUAki_TMT10x_P_F5 96.367 68.738 18087000 26680000 125270 27104000 20059000 30042000 21070000 15483000 14087000 15824000 20153000 16841000 24897000 1487600 27664000 19256000 30097000 21103000 16487000 14852000 15440000 19253000 2 2 1 2 2 2 2 2 2 2 2 18087000 26680000 125270 27104000 20059000 30042000 21070000 15483000 14087000 15824000 20153000 16841000 24897000 1487600 27664000 19256000 30097000 21103000 16487000 14852000 15440000 19253000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 321670000 321670000 0 2753 352 2578 15902 19089;19090 19089 2 DIDDDLEGEVTEECGK Unmodified 1822.7415 0.74146822 3124 Q9UHX1-6;Q9UHX1-5;Q9UHX1-4;Q9UHX1-2;Q9UHX1;Q9UHX1-3 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 3 2 1 58.467 58.467 2;3 2.6921E-66 17505 20211116_3428_TMUAki_TMT10x_P_F1 269.04 235.17 4969400 8469400 34203 9091300 8197600 12234000 7071000 6419000 6203300 5876100 6839900 4627200 7905200 489080 9277700 7834000 12138000 7204400 6803600 6371400 5761200 6578500 2 2 2 2 2 2 2 2 2 2 2 4969400 8469400 34203 9091300 8197600 12234000 7071000 6419000 6203300 5876100 6839900 4627200 7905200 489080 9277700 7834000 12138000 7204400 6803600 6371400 5761200 6578500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 884140000 884140000 0 2754 3124 2579 15903;15904;15905 19091;19092;19093;19094 19093 4 DIDEVSSLLR Unmodified 1145.5928 0.59281755 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 By MS/MS By MS/MS 2.57 1.18 2 1 2 2 4 3 65.308 65.114 2 2.2986E-25 23247 20211116_3441_TMUAki_TMT10x_S_F3 266.8 187.33 52792000 87552000 155500 88279000 71334000 96046000 65057000 78134000 79013000 76008000 75743000 49154000 81698000 4609100 90123000 68239000 96963000 66750000 80282000 79656000 74321000 73167000 8 8 4 8 8 8 8 8 8 8 8 29236000 46835000 155500 47837000 44850000 69958000 40439000 41303000 43329000 41010000 39975000 27223000 43706000 2783700 49061000 42903000 69260000 41339000 43431000 43834000 40065000 38666000 5 5 4 5 5 5 5 5 5 5 5 23555000 40717000 0 40442000 26483000 26087000 24618000 36831000 35684000 34998000 35768000 21931000 37992000 1825400 41062000 25336000 27703000 25412000 36850000 35821000 34256000 34501000 3 3 0 3 3 3 3 3 3 3 3 7095600000 4567200000 2528500000 2755 1146 2580 15906;15907;15908;15909;15910;15911;15912 19095;19096;19097;19098;19099;19100;19101;19102 19101 8 DIDFLKEEEHDCFLEEIMTK Oxidation (M) 2556.14 0.14000682 640 P12268 IMPDH2 Inosine-5'-monophosphate dehydrogenase 2 yes yes 0 0 1 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 74.875 74.802 4 4.5999E-09 26135 20211116_3439_TMUAki_TMT10x_S_F1 112.44 98.423 32571000 56139000 488260 46539000 37195000 56007000 45518000 44653000 48638000 46517000 47050000 30328000 52348000 2871800 48297000 35880000 56217000 45833000 46029000 49288000 45354000 45436000 8 8 4 8 8 8 8 8 8 8 8 14833000 23888000 345730 21193000 15953000 30574000 19575000 17339000 19021000 19421000 20520000 13812000 22280000 1491700 21951000 15403000 30270000 19649000 18359000 19428000 18882000 19749000 3 3 2 3 3 3 3 3 3 3 3 17739000 32251000 142530 25346000 21242000 25433000 25943000 27314000 29617000 27095000 26530000 16515000 30068000 1380100 26346000 20477000 25947000 26183000 27670000 29860000 26472000 25688000 5 5 2 5 5 5 5 5 5 5 5 3117500000 1521800000 1595800000 2756 640 2581 15913;15914;15915;15916 19103;19104;19105;19106;19107;19108;19109;19110 19107 672 8 DIDFLKEEEHDCFLEEIMTK Unmodified 2540.1451 0.1450922 640 P12268 IMPDH2 Inosine-5'-monophosphate dehydrogenase 2 yes yes 0 0 0 1 By MS/MS 2 0 1 1 78.048 77.998 4 2.7112E-05 26912 20211116_3429_TMUAki_TMT10x_P_F2 80.236 71.389 5761300 9745300 37794 8644200 5865600 7817700 7143600 2793700 2638800 3121200 5459600 5364700 9089200 514340 8884000 5658700 7902300 7039800 3103800 2981800 3034800 5179400 1 1 1 1 1 1 1 1 1 1 1 5761300 9745300 37794 8644200 5865600 7817700 7143600 2793700 2638800 3121200 5459600 5364700 9089200 514340 8884000 5658700 7902300 7039800 3103800 2981800 3034800 5179400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 708230000 708230000 0 2757 640 2581 15917 19111 19111 1 DIDIEDLEELDPDFIMAK Oxidation (M) 2135.982 0.98203284 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 1 0 By MS/MS By MS/MS 1.29 0.452 5 2 2 5 67.844 67.823 2;3 1.0553E-16 26527 20211116_3428_TMUAki_TMT10x_P_F1 142.07 127.38 10553000 16993000 248310 17332000 9721300 13984000 10293000 7526900 8898400 8756500 11283000 9827400 15858000 1093500 17608000 9350600 14308000 10368000 8015500 9198300 8501400 10811000 4 4 3 4 4 4 4 4 4 4 4 6212500 9603600 127430 10398000 5211400 9498600 5658000 4457200 4978700 5157300 6667300 5785400 8964200 619800 10538000 5015900 9618800 5694700 4807200 5154600 5008100 6379400 2 2 2 2 2 2 2 2 2 2 2 4340100 7389900 120880 6934100 4509900 4485600 4635500 3069700 3919700 3599200 4615900 4042000 6893800 473660 7069500 4334700 4688800 4673200 3208400 4043600 3493400 4431200 2 2 1 2 2 2 2 2 2 2 2 4378200000 2841500000 1536700000 2758 1684 2582 15918;15919;15920;15921;15922;15923;15924 19112;19113;19114;19115;19116;19117 19113 2247 6 DIDIEDLEELDPDFIMAK Unmodified 2119.9871 0.98711822 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 By MS/MS By matching 1 0 2 1 1 81.537 81.523 3 4.3082E-08 26986 20211116_3428_TMUAki_TMT10x_P_F1 103.13 91.861 2881800 4147900 0 5339600 2533200 3621400 2521100 1949500 1698600 1644000 2955600 2683000 3874800 207920 5337400 2426900 3757600 2532400 2057400 1808600 1618200 2812200 2 2 0 2 2 2 2 2 2 2 2 2881800 4147900 0 5339600 2533200 3621400 2521100 1949500 1698600 1644000 2955600 2683000 3874800 207920 5337400 2426900 3757600 2532400 2057400 1808600 1618200 2812200 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1573400000 1102200000 471210000 2759 1684 2582 15925;15926 19118;19119 19119 2 DIDIHEVR Unmodified 995.50361 0.50360861 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 By MS/MS By MS/MS 2.5 1.44 4 3 2 1 2 6 6 33.11 33.051 2;3 0.00015773 9037 20211116_3429_TMUAki_TMT10x_P_F2 145.16 108.06 21039000 32065000 271260 34061000 24662000 28831000 24152000 20662000 21832000 20880000 25965000 19590000 29927000 1921500 34528000 23643000 29510000 24453000 21426000 22459000 20384000 24920000 13 13 6 13 13 13 13 13 13 13 13 10994000 16319000 201270 17403000 14105000 18499000 12430000 10352000 10821000 10444000 12913000 10237000 15231000 1026300 17694000 13487000 18595000 12646000 10939000 11153000 10197000 12392000 6 6 2 6 6 6 6 6 6 6 6 10045000 15746000 69991 16657000 10557000 10331000 11722000 10310000 11012000 10436000 13053000 9353000 14696000 895230 16834000 10155000 10914000 11807000 10487000 11306000 10187000 12528000 7 7 4 7 7 7 7 7 7 7 7 4052900000 2468200000 1584700000 2760 1474 2583 15927;15928;15929;15930;15931;15932;15933;15934;15935;15936;15937;15938 19120;19121;19122;19123;19124;19125;19126;19127;19128;19129;19130;19131;19132 19122 13 DIDPQNDLTFLR Unmodified 1445.7151 0.71505795 2884 Q9NP97;Q8TF09 DYNLRB1;DYNLRB2 Dynein light chain roadblock-type 1;Dynein light chain roadblock-type 2 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 68.125 67.93 2 1.4284E-30 23400 20211116_3430_TMUAki_TMT10x_P_F3 268.32 243.08 49087000 82782000 121740 78496000 56673000 69968000 56040000 45218000 44085000 48136000 59402000 45703000 77228000 3966600 80254000 54311000 71248000 56506000 47311000 45915000 46892000 56829000 10 10 3 10 10 10 10 10 10 10 10 22772000 36434000 121740 34258000 23721000 40030000 24690000 19793000 19798000 21878000 25935000 21203000 33989000 1908000 35189000 22770000 39969000 24842000 21208000 20573000 21281000 24829000 5 5 3 5 5 5 5 5 5 5 5 26315000 46348000 0 44238000 32952000 29938000 31350000 25426000 24286000 26258000 33467000 24500000 43240000 2058600 45065000 31541000 31279000 31664000 26104000 25342000 25611000 32000000 5 5 0 5 5 5 5 5 5 5 5 7055900000 4084300000 2971600000 2761 2884 2584 15939;15940;15941;15942;15943;15944;15945;15946 19133;19134;19135;19136;19137;19138;19139;19140;19141;19142 19136 10 DIDTLRDPGSQLR Unmodified 1484.7583 0.75831975 630 P11717 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 0 0 0 1 By MS/MS 3.5 0.5 1 1 2 39.817 39.87 3 8.0601E-05 11068 20211116_3431_TMUAki_TMT10x_P_F4 85.837 67.092 212730 342510 22859 389590 524620 447990 284390 227590 291350 203860 254150 198250 319780 43309 394990 498380 447820 301240 241810 294780 200080 246320 1 1 1 1 1 1 1 1 1 1 1 212730 342510 22859 389590 524620 447990 284390 227590 291350 203860 254150 198250 319780 43309 394990 498380 447820 301240 241810 294780 200080 246320 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12531000 12531000 0 2762 630 2585 15947;15948 19143;19144 19144 2 DIEDVFYK Unmodified 1027.4862 0.48622722 1543 Q07955;Q07955-3;Q07955-2 SRSF1 Serine/arginine-rich splicing factor 1 yes no 0 0 0 0 By MS/MS By MS/MS 3 1.29 1 1 2 1 1 3 3 65.343 65.127 2 0.00046854 20583 20211116_3431_TMUAki_TMT10x_P_F4 157.54 86.159 32480000 51672000 194990 65324000 46047000 54096000 35707000 37010000 41239000 36246000 43361000 30242000 48266000 2872000 65509000 43892000 55418000 36931000 38469000 41787000 35431000 41763000 4 4 2 4 4 4 4 4 4 4 4 23718000 37214000 125520 47525000 37606000 46747000 27968000 26749000 29847000 26130000 31074000 22083000 34763000 2085200 47744000 35811000 47222000 28931000 28187000 30325000 25546000 29938000 3 3 1 3 3 3 3 3 3 3 3 8762600 14458000 69466 17799000 8441600 7348900 7738400 10261000 11393000 10116000 12288000 8159400 13503000 786720 17766000 8080700 8196600 7999300 10282000 11462000 9885700 11826000 1 1 1 1 1 1 1 1 1 1 1 2141700000 1601200000 540470000 2763 1543 2586 15949;15950;15951;15952;15953;15954 19145;19146;19147;19148;19149;19150;19151 19148 7 DIEEVSQGLLSLLGANR Unmodified 1812.9581 0.95814177 2228 Q8NBT2;Q8NBT2-2 SPC24 Kinetochore protein Spc24 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 1.19 1 1 4 3 3 6 6 82.228 82.236 2;3 2.056E-47 29144 20211116_3446_TMUAki_TMT10x_S_F7 246.86 213.02 4784200 7535800 19341 7120000 5316500 7511700 5660300 5068500 4897000 5841600 5923800 4454200 7030200 242900 7298800 5103100 7573400 5699900 5299700 5051700 5673400 5682700 10 10 3 10 10 10 10 10 10 10 10 3436300 4950300 4124.6 4911000 3354700 5645900 3766600 3487000 3184300 3924600 4054400 3199200 4619000 147180 5023800 3224200 5657800 3781000 3667400 3295900 3814900 3884200 6 6 1 6 6 6 6 6 6 6 6 1347900 2585600 15217 2209000 1961800 1865800 1893700 1581400 1712700 1917100 1869400 1255000 2411200 95715 2275000 1878900 1915500 1918800 1632300 1755900 1858500 1798500 4 4 2 4 4 4 4 4 4 4 4 1909400000 617940000 1291500000 2764 2228 2587 15955;15956;15957;15958;15959;15960;15961;15962;15963;15964;15965;15966 19152;19153;19154;19155;19156;19157;19158;19159;19160;19161;19162 19160 11 DIELQIR Unmodified 885.49198 0.4919813 87 O00429;O00429-2;O00429-4;O00429-3;O00429-5;O00429-9;O00429-8;O00429-6 DNM1L Dynamin-1-like protein yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 48.41 48.057 2 0.019013 16329 20211116_3441_TMUAki_TMT10x_S_F3 89.046 20.259 2287000 3844300 23590 4244500 2177700 2332000 2644200 2800600 2862900 2607500 3156000 2129600 3588600 210060 4273200 2101200 2504200 2664500 2818100 2913300 2554600 3035400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2287000 3844300 23590 4244500 2177700 2332000 2644200 2800600 2862900 2607500 3156000 2129600 3588600 210060 4273200 2101200 2504200 2664500 2818100 2913300 2554600 3035400 1 1 1 1 1 1 1 1 1 1 1 79563000 0 79563000 2765 87 2588 15967;15968 19163;19164 19164 2 DIELVMSQANVSR Oxidation (M) 1476.7242 0.72424243 59 E9PAV3;Q13765;E9PAV3-2 NACA Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha yes no 0 0 1 0 By MS/MS By MS/MS 3.57 0.495 3 4 4 3 46.173 46.28 2;3 6.5546E-06 13182 20211116_3442_TMUAki_TMT10x_S_F4 113.42 99.827 6043800 9173400 165290 10639000 8504100 8686000 6565300 6740200 6645700 5995500 7982700 5628500 8565200 681660 10720000 8114800 8925500 6763300 6928900 6804800 5886200 7659200 5 5 3 5 5 5 5 5 5 5 5 3976100 5754200 60821 6807400 6791900 6990000 4711300 4106700 4161700 3724100 5108900 3702600 5373200 424610 6873000 6463600 7044900 4870600 4309500 4291500 3652900 4899000 3 3 2 3 3 3 3 3 3 3 3 2067700 3419200 104470 3831100 1712200 1696000 1854000 2633600 2484000 2271400 2873800 1925900 3192000 257060 3847300 1651200 1880500 1892700 2619500 2513300 2233300 2760200 2 2 1 2 2 2 2 2 2 2 2 1145400000 767680000 377680000 2766 59 2589 15969;15970;15971;15972;15973;15974;15975 19165;19166;19167;19168;19169;19170 19170 27 6 DIELVMSQANVSR Unmodified 1460.7293 0.72932781 59 E9PAV3;Q13765;E9PAV3-2 NACA Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha yes no 0 0 0 0 By MS/MS By MS/MS 4.6 0.49 2 3 3 2 59.82 59.935 2;3 7.7423E-24 18933 20211116_3442_TMUAki_TMT10x_S_F4 186.27 20.493 6094300 8904700 0 11393000 5973800 6215800 5003600 3711600 3932800 4169200 6512800 5672800 8318400 299730 11369000 5690300 6595300 5092900 3913800 4139400 4053000 6202800 2 2 0 2 2 2 2 2 2 2 2 4018100 5603100 0 7556900 4353800 4754400 3635300 1702900 1804600 2094600 3769100 3740200 5235600 205920 7529400 4148000 4947800 3668300 1897100 1985600 2029600 3575100 1 1 0 1 1 1 1 1 1 1 1 2076300 3301600 0 3835800 1620000 1461400 1368300 2008800 2128300 2074600 2743700 1932600 3082800 93810 3839900 1542300 1647600 1424600 2016700 2153700 2023400 2627700 1 1 0 1 1 1 1 1 1 1 1 1075300000 511610000 563710000 2767 59 2589 15976;15977;15978;15979;15980 19171;19172;19173;19174;19175 19174 5 DIEQIAEFLEQSVK Unmodified 1647.8356 0.83556702 724 P18858;P18858-3;P18858-2 LIG1 DNA ligase 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.8 0.748 2 2 1 4 1 82.33 82.314 3 9.2567E-09 27431 20211116_3440_TMUAki_TMT10x_S_F2 106.52 85.861 549800 780240 6600.2 914660 533650 870830 545450 353040 429270 466870 682440 511970 728550 51507 922950 512380 878210 549060 388490 450780 451280 650480 1 1 1 1 1 1 1 1 1 1 1 549800 780240 6600.2 914660 533650 870830 545450 353040 429270 466870 682440 511970 728550 51507 922950 512380 878210 549060 388490 450780 451280 650480 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 212640000 212640000 0 2768 724 2590 15981;15982;15983;15984;15985 19176;19177;19178 19178 3 DIEQYYSTQIDEMPMNVADLI 2 Oxidation (M) 2519.1084 0.10837234 973 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 0 0 2 0 By MS/MS By MS/MS 2 1.15 3 1 1 1 2 4 80.493 80.473 2;3 3.716E-26 26486 20211116_3428_TMUAki_TMT10x_P_F1 162.32 141.46 4961000 9864000 36214 8232600 5629100 8804300 7219800 7321300 6869300 7556000 7928400 4619400 9198100 335240 8522400 5439300 8900700 7229300 7525700 7041200 7369900 7615400 6 6 3 6 6 6 6 6 6 6 6 2679700 4795000 12335 4066700 2289900 5375300 3355400 3172700 3417700 3637400 3488400 2495100 4471500 222400 4219700 2222800 5345800 3349700 3350800 3476700 3533400 3363000 3 3 1 3 3 3 3 3 3 3 3 2281300 5069000 23879 4165900 3339200 3429000 3864400 4148600 3451600 3918500 4440000 2124300 4726600 112840 4302600 3216400 3554900 3879600 4174800 3564500 3836500 4252500 3 3 2 3 3 3 3 3 3 3 3 3740200000 1859900000 1880300000 2769 973 2591 15986;15987;15988;15989;15990;15991 19179;19180;19181;19182;19183;19184 19179 1242;1243 6 DIEQYYSTQIDEMPMNVADLI Oxidation (M) 2503.1135 0.11345772 973 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 0 0 1 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 82.155 82.146 3 3.289E-05 27348 20211116_3440_TMUAki_TMT10x_S_F2 75.122 67.319 5696100 9468800 86345 9180400 6971300 8786600 7483100 5478700 5617000 5962800 6926400 5304100 8834300 405640 9380000 6700700 8901100 7505900 5751800 5842500 5803700 6641200 5 5 2 5 5 5 5 5 5 5 5 3623400 5845100 62590 5241300 4034700 6013400 4122500 3451000 3016000 3609400 4300800 3374000 5451900 336530 5401200 3872800 6020900 4142800 3642800 3162300 3518600 4109100 3 3 1 3 3 3 3 3 3 3 3 2072700 3623700 23755 3939100 2936600 2773200 3360600 2027700 2601000 2353400 2625600 1930100 3382500 69110 3978800 2827900 2880300 3363200 2109000 2680200 2285100 2532100 2 2 1 2 2 2 2 2 2 2 2 1153800000 702330000 451490000 2770 973 2591 15992;15993;15994;15995 19185;19186;19187;19188;19189 19189 1242;1243 5 DIEREDIEFICK Unmodified 1565.7396 0.73955814 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 1 By MS/MS By MS/MS 3 1.29 2 2 4 2 2 5 7 60.814 60.717 3 1.5728E-15 19659 20211116_3441_TMUAki_TMT10x_S_F3 192.18 170.93 145320000 223660000 1040300 292870000 177390000 188500000 146850000 126930000 115500000 132760000 170620000 135310000 208960000 13027000 292330000 169360000 197090000 149590000 132340000 120830000 129420000 162880000 17 17 12 17 17 17 17 17 17 17 17 73743000 108940000 413030 146620000 113750000 134660000 83715000 63102000 58034000 66264000 84080000 68664000 101790000 6933800 146730000 108330000 136310000 85692000 67864000 61088000 64587000 80302000 8 8 6 8 8 8 8 8 8 8 8 71577000 114720000 627260 146250000 63639000 53846000 63137000 63833000 57463000 66497000 86537000 66647000 107170000 6093300 145590000 61025000 60779000 63893000 64477000 59739000 64835000 82579000 9 9 6 9 9 9 9 9 9 9 9 18652000000 10505000000 8147400000 2771 1147 2592 15996;15997;15998;15999;16000;16001;16002;16003;16004;16005;16006;16007 19190;19191;19192;19193;19194;19195;19196;19197;19198;19199;19200;19201;19202;19203;19204;19205;19206;19207 19200 18 DIETFYNTSIEEMPLNVADLI Oxidation (M) 2442.1512 0.15122343 1277 P60842 EIF4A1 Eukaryotic initiation factor 4A-I yes yes 0 0 1 0 By MS/MS By MS/MS 2.1 1.14 4 3 1 2 4 6 84.763 84.762 2;3 6.203E-26 29271 20211116_3429_TMUAki_TMT10x_P_F2 169.62 143.9 4076200 7126900 20224 6302300 4421200 7022600 5055800 4362200 5244300 5255400 5515800 3795200 6647100 176550 6498400 4254200 7049900 5101000 4596200 5336600 5095900 5312500 12 12 5 12 12 12 12 12 12 12 12 2197600 3843700 8412.5 3547700 2140300 4721600 2462200 2285500 3131100 2981000 3006000 2046200 3585500 77550 3657700 2060700 4682900 2501400 2467500 3151600 2882800 2903700 5 5 2 5 5 5 5 5 5 5 5 1878600 3283200 11811 2754600 2280900 2301000 2593600 2076700 2113300 2274400 2509800 1749000 3061600 99004 2840700 2193500 2367000 2599600 2128700 2185000 2213100 2408800 7 7 3 7 7 7 7 7 7 7 7 1866400000 1231500000 634900000 2772 1277 2593 16008;16009;16010;16011;16012;16013;16014;16015;16016;16017 19208;19209;19210;19211;19212;19213;19214;19215;19216;19217;19218;19219 19211 1729 12 DIETFYNTTVEEMPMNVADLI 2 Oxidation (M) 2476.1026 0.10255868 1697 Q14240;Q14240-2 EIF4A2 Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed yes no 0 0 2 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 81.458 81.442 3 4.0856E-05 26880 20211116_3428_TMUAki_TMT10x_P_F1 74.618 69.727 11294000 18395000 81286 18057000 10041000 11261000 11627000 6252200 6394200 7338700 12828000 10515000 17163000 838100 18343000 9662500 11778000 11549000 6642000 6962200 7122600 12176000 5 5 3 5 5 5 5 5 5 5 5 7512400 12152000 10356 12224000 5888500 7922900 7206300 3939800 4082100 4754200 8347300 6993700 11340000 453290 12401000 5669800 8247100 7144100 4231100 4440900 4609700 7920300 3 3 1 3 3 3 3 3 3 3 3 3781500 6242300 70930 5833400 4152600 3337600 4420400 2312400 2312000 2584500 4480800 3521400 5823200 384810 5942600 3992700 3531000 4404500 2411000 2521300 2512900 4255300 2 2 2 2 2 2 2 2 2 2 2 2469000000 1691200000 777840000 2773 1697 2594 16018;16019;16020;16021;16022 19220;19221;19222;19223;19224 19220 2288;2289 5 DIETFYNTTVEEMPMNVADLI Oxidation (M) 2460.1076 0.10764406 1697 Q14240;Q14240-2 EIF4A2 Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed yes no 0 0 1 0 By MS/MS 1 0 1 1 83.015 83.015 3 2.5115E-07 27510 20211116_3428_TMUAki_TMT10x_P_F1 86.479 67.651 1558700 2324500 11526 2255800 1333500 2927900 1573800 1584100 1416900 1569200 1957300 1451300 2168800 136810 2316200 1285400 2911100 1579000 1678000 1467500 1533200 1871400 1 1 1 1 1 1 1 1 1 1 1 1558700 2324500 11526 2255800 1333500 2927900 1573800 1584100 1416900 1569200 1957300 1451300 2168800 136810 2316200 1285400 2911100 1579000 1678000 1467500 1533200 1871400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 266900000 266900000 0 2774 1697 2594 16023 19225 19225 2288;2289 1 DIFEGVYFPAISLYK Unmodified 1760.9025 0.90252437 3079 Q9UBL3;Q9UBL3-3 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 yes no 0 0 0 0 By MS/MS 8 0 1 1 81.149 81.154 3 0.011842 26903 20211116_3436_TMUAki_TMT10x_P_F8 51.03 32.198 709570 1107000 27864 1131400 855210 1218200 768590 624440 678510 821750 937280 660890 1033000 86837 1153800 819530 1222300 781350 670760 703390 794440 896150 1 1 1 1 1 1 1 1 1 1 1 709570 1107000 27864 1131400 855210 1218200 768590 624440 678510 821750 937280 660890 1033000 86837 1153800 819530 1222300 781350 670760 703390 794440 896150 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 245470000 245470000 0 2775 3079 2595 16024 19226 19226 1 DIFPYSENK Unmodified 1111.5186 0.51858998 336 O75475;O75475-2;O75475-3 PSIP1 PC4 and SFRS1-interacting protein yes no 0 0 0 0 By MS/MS By matching 4.25 0.829 1 1 2 3 1 53.644 53.737 2 6.3639E-05 15871 20211116_3431_TMUAki_TMT10x_P_F4 145.72 88.546 3251600 5076100 9587 6977300 10225000 9352200 5625900 4485000 5601000 3708400 4971700 3027600 4743600 376170 7019200 9688700 9271500 5946300 4782400 5676900 3653800 4815500 1 1 1 1 1 1 1 1 1 1 1 3251600 5076100 9587 6977300 10225000 9352200 5625900 4485000 5601000 3708400 4971700 3027600 4743600 376170 7019200 9688700 9271500 5946300 4782400 5676900 3653800 4815500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 901980000 679810000 222160000 2776 336 2596 16025;16026;16027;16028 19227 19227 1 DIFQEIFDK Unmodified 1153.5655 0.56554017 1083 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 0 By MS/MS 4 0 1 1 79.58 79.556 2 3.1017E-05 26898 20211116_3442_TMUAki_TMT10x_S_F4 110.38 68.273 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2777 1083 2597 16029 19228 19228 1 DIFSEVGPVVSFR Unmodified 1450.7456 0.7456298 907 P33240;P33240-2 CSTF2 Cleavage stimulation factor subunit 2 yes no 0 0 0 0 By MS/MS 6 0 1 1 77.553 77.522 2 1.1606E-11 25112 20211116_3445_TMUAki_TMT10x_S_F6 154 123.83 4249500 7307400 134990 6231400 5912200 4579100 5320100 4046000 3684200 4320900 5134400 3957700 6814600 501400 6408300 5662200 4754800 5376800 4148800 3871100 4208700 4908100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4249500 7307400 134990 6231400 5912200 4579100 5320100 4046000 3684200 4320900 5134400 3957700 6814600 501400 6408300 5662200 4754800 5376800 4148800 3871100 4208700 4908100 1 1 1 1 1 1 1 1 1 1 1 642390000 0 642390000 2778 907 2598 16030 19229 19229 1 DIGAIAQVHAENGDIIAEEQQR Unmodified 2376.167 0.16696535 1852 Q16555;Q16555-2 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 2.65 1.23 4 4 4 4 1 8 9 53.805 53.688 3;4 1.834E-68 15490 20211116_3428_TMUAki_TMT10x_P_F1 251.13 219.26 43980000 73361000 325220 70839000 50183000 69286000 50314000 60358000 61519000 58322000 60479000 40948000 68444000 3388400 72423000 48111000 70479000 51375000 61758000 62058000 57044000 58374000 25 25 11 25 25 25 25 25 25 25 25 21246000 33469000 147440 32133000 28102000 43147000 26400000 28108000 29744000 26955000 28417000 19782000 31225000 1572700 33040000 26898000 42938000 26972000 29303000 30066000 26373000 27454000 12 12 5 12 12 12 12 12 12 12 12 22734000 39892000 177780 38707000 22080000 26139000 23913000 32251000 31775000 31367000 32062000 21167000 37219000 1815700 39383000 21214000 27541000 24404000 32455000 31992000 30671000 30920000 13 13 6 13 13 13 13 13 13 13 13 20418000000 11509000000 8908500000 2779 1852 2599 16031;16032;16033;16034;16035;16036;16037;16038;16039;16040;16041;16042;16043;16044;16045;16046;16047 19230;19231;19232;19233;19234;19235;19236;19237;19238;19239;19240;19241;19242;19243;19244;19245;19246;19247;19248;19249;19250;19251;19252;19253;19254 19230 25 DIGAIAR Unmodified 714.40244 0.40243801 2617 Q9BPU6 DPYSL5 Dihydropyrimidinase-related protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 4.81 2.32 3 3 3 7 3 3 2 7 16 15 29.355 29.409 2 0.0015627 4771 20211116_3434_TMUAki_TMT10x_P_F6 136.08 136.08 66516000 110330000 18026 102740000 90562000 92942000 75036000 69316000 74952000 66599000 85926000 61922000 102930000 4582000 105200000 86362000 94757000 76922000 71587000 76644000 65156000 82550000 37 37 5 37 37 37 37 37 37 37 37 26186000 41566000 2220.8 37814000 40625000 50851000 24935000 26122000 28526000 25098000 31131000 24378000 38772000 1852300 39037000 38524000 50444000 26224000 27776000 28956000 24554000 29950000 19 19 2 19 19 19 19 19 19 19 19 40329000 68769000 15805 64925000 49937000 42091000 50101000 43194000 46426000 41501000 54795000 37545000 64154000 2729700 66164000 47838000 44313000 50697000 43811000 47688000 40602000 52600000 18 18 3 18 18 18 18 18 18 18 18 23154000000 8195800000 14958000000 2780 2617 2600 16048;16049;16050;16051;16052;16053;16054;16055;16056;16057;16058;16059;16060;16061;16062;16063;16064;16065;16066;16067;16068;16069;16070;16071;16072;16073;16074;16075;16076;16077;16078 19255;19256;19257;19258;19259;19260;19261;19262;19263;19264;19265;19266;19267;19268;19269;19270;19271;19272;19273;19274;19275;19276;19277;19278;19279;19280;19281;19282;19283;19284;19285;19286;19287;19288;19289;19290;19291;19292 19263 38 DIGEGNLSTAAAAALAAAAVK Unmodified 1883.9953 0.99525556 2263 Q8TAQ2;Q8TAQ2-2;Q8TAQ2-3 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 78.921 78.931 3 2.0625E-19 27400 20211116_3435_TMUAki_TMT10x_P_F7 149.36 136.22 31851000 52015000 442970 49805000 37261000 47820000 39624000 27584000 28167000 30622000 37319000 29660000 48527000 3129300 50936000 35814000 48384000 39714000 29157000 29481000 29782000 35717000 6 6 6 6 6 6 6 6 6 6 6 20401000 32629000 367040 31052000 19309000 35096000 23412000 16665000 17776000 19237000 22702000 18998000 30440000 2018100 31850000 18640000 35090000 23359000 17951000 18506000 18682000 21748000 4 4 4 4 4 4 4 4 4 4 4 11451000 19386000 75933 18753000 17952000 12724000 16211000 10919000 10391000 11385000 14617000 10662000 18087000 1111200 19086000 17174000 13294000 16355000 11207000 10975000 11100000 13970000 2 2 2 2 2 2 2 2 2 2 2 6605100000 3400200000 3204900000 2781 2263 2601 16079;16080;16081;16082;16083 19293;19294;19295;19296;19297;19298 19294 6 DIGFIKLD Unmodified 919.50148 0.50148335 1346 P62273 RPS29 40S ribosomal protein S29 yes yes 0 0 0 1 By MS/MS 6 0 1 1 69.598 69.514 2 0.0075754 21856 20211116_3445_TMUAki_TMT10x_S_F6 97.431 46.465 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2782 1346 2602 16084 19299 19299 1 DIHDDQDYLHSLGK Unmodified 1654.7587 0.75871368 373 O75955;O75955-2 FLOT1 Flotillin-1 yes no 0 0 0 0 By MS/MS By matching 3 0 2 1 1 48.254 48.059 4 2.6739E-08 15253 20211116_3430_TMUAki_TMT10x_P_F3 121.48 107.45 615050 853560 6212.6 1020200 1512200 1797600 872500 1052700 918560 905890 876740 572720 797090 69347 1040700 1434200 1766600 919890 1103500 930970 890790 847060 1 1 1 1 1 1 1 1 1 1 1 615050 853560 6212.6 1020200 1512200 1797600 872500 1052700 918560 905890 876740 572720 797090 69347 1040700 1434200 1766600 919890 1103500 930970 890790 847060 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 154120000 86307000 67815000 2783 373 2603 16085;16086 19300 19300 1 DIHFMPCSGLTGANLK Unmodified 1759.8386 0.83856068 681 P15170-3;P15170-2;P15170 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 0 0 0 0 By MS/MS By MS/MS 7 1.41 1 2 1 2 59.442 59.526 3 7.6582E-11 17982 20211116_3436_TMUAki_TMT10x_P_F8 131.86 0 9107700 14952000 77515 17647000 9770900 9988000 9935000 5711200 4964100 6074400 9644300 8480500 13961000 806520 17698000 9375600 10551000 9915000 6033400 5433700 5917600 9158700 2 2 1 2 2 2 2 2 2 2 2 4810200 7646700 77515 8898700 5757200 6922900 5649600 3143200 2710600 3484000 5022200 4479300 7139900 484300 8960100 5522200 7089600 5645300 3396700 2968200 3388600 4773200 1 1 1 1 1 1 1 1 1 1 1 4297500 7304900 0 8748500 4013700 3065000 4285300 2568000 2253600 2590400 4622100 4001200 6821600 322220 8737900 3853400 3461800 4269700 2636700 2465600 2529000 4385500 1 1 0 1 1 1 1 1 1 1 1 1117300000 561410000 555860000 2784 681 2604 16087;16088;16089 19301;19302;19303 19301 3 DIHTLAQLISAYSLVDPEK Unmodified 2112.1103 0.11028532 381 O76094;O76094-2 SRP72 Signal recognition particle subunit SRP72 yes no 0 0 0 0 By MS/MS By MS/MS 6.17 2.41 1 1 2 2 3 3 80.519 80.521 3 7.0738E-18 26004 20211116_3447_TMUAki_TMT10x_S_F8 151.95 139.78 21872000 32890000 83277 33900000 19630000 26213000 24887000 13220000 15991000 18434000 23327000 20364000 30693000 1629100 34397000 18945000 26887000 24694000 14253000 16918000 17788000 22276000 7 7 1 7 7 7 7 7 7 7 7 12027000 17742000 83277 17885000 9486600 16217000 11482000 6877800 8737600 10505000 12756000 11198000 16556000 898740 18210000 9142300 16414000 11457000 7572800 9151700 10111000 12181000 4 4 1 4 4 4 4 4 4 4 4 9845300 15148000 0 16015000 10144000 9996600 13405000 6342200 7253400 7928300 10571000 9166200 14138000 730350 16187000 9802300 10473000 13236000 6680200 7766000 7677800 10095000 3 3 0 3 3 3 3 3 3 3 3 4699400000 2535800000 2163600000 2785 381 2605 16090;16091;16092;16093;16094;16095 19304;19305;19306;19307;19308;19309;19310 19310 7 DIHVPPR Unmodified 832.45554 0.45553621 3148 Q9UJZ1 STOML2 Stomatin-like protein 2, mitochondrial yes yes 0 0 0 0 By MS/MS 3 0 1 1 29.375 29.101 3 0.060227 8762 20211116_3441_TMUAki_TMT10x_S_F3 42.095 24.059 125080 246360 3633.5 196550 172340 156700 159210 96401 169430 156620 147100 116490 229690 14418 203440 165130 160740 162500 102860 171130 150480 142600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 125080 246360 3633.5 196550 172340 156700 159210 96401 169430 156620 147100 116490 229690 14418 203440 165130 160740 162500 102860 171130 150480 142600 1 1 1 1 1 1 1 1 1 1 1 3557200 0 3557200 2786 3148 2606 16096 19311 19311 1 DIICQIAYAR Unmodified 1221.6176 0.61759251 1051 P46777 RPL5 60S ribosomal protein L5 yes yes 0 0 0 0 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 57.248 57.563 2 3.2554E-08 16919 20211116_3445_TMUAki_TMT10x_S_F6 162.97 127.09 45580000 73464000 249670 83048000 56316000 66629000 46597000 47700000 42239000 49502000 55352000 42439000 68585000 3838400 83800000 53748000 68464000 47638000 49508000 43627000 48272000 52990000 5 5 4 5 5 5 5 5 5 5 5 21996000 35890000 181290 37780000 35920000 47350000 27681000 21950000 19169000 23027000 25989000 20482000 33496000 2187600 38551000 34246000 47076000 28245000 23631000 20115000 22445000 24860000 3 3 3 3 3 3 3 3 3 3 3 23584000 37574000 68376 45268000 20396000 19279000 18916000 25751000 23070000 26475000 29362000 21957000 35089000 1650800 45248000 19502000 21388000 19393000 25876000 23511000 25827000 28130000 2 2 1 2 2 2 2 2 2 2 2 6734400000 3746000000 2988400000 2787 1051 2607 16097;16098;16099;16100;16101 19312;19313;19314;19315;19316 19315 5 DIIFAIKK Unmodified 946.58515 0.5851534 619 P11177;P11177-2;P11177-3 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes no 0 0 0 1 By MS/MS 2 0 1 1 59.673 59.441 3 0.040616 18175 20211116_3440_TMUAki_TMT10x_S_F2 56.378 40.797 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2788 619 2608 16102 19317 19317 1 DIIHDPGR Unmodified 921.46683 0.46682918 1384 P62917 RPL8 60S ribosomal protein L8 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.894 2 1 2 2 3 30.319 30.181 2;3 0.003373 9125 20211116_3441_TMUAki_TMT10x_S_F3 84.743 58.916 1732200 3026800 43755 2596600 2168900 2267900 1945500 1482200 1634000 1559400 2185500 1613200 2822700 190500 2674500 2076700 2313000 1975400 1548900 1695500 1519800 2091200 6 6 6 6 6 6 6 6 6 6 6 854590 1442500 26762 1083500 1153600 1383100 902330 679560 759300 713190 1045300 795910 1344600 99981 1135200 1101400 1374700 923980 727450 788870 695150 999550 2 2 2 2 2 2 2 2 2 2 2 877600 1584300 16992 1513100 1015300 884730 1043200 802620 874700 846170 1140200 817260 1478100 90524 1539200 975240 938220 1051400 821490 906650 824620 1091700 4 4 4 4 4 4 4 4 4 4 4 340780000 151480000 189300000 2789 1384 2609 16103;16104;16105;16106;16107 19318;19319;19320;19321;19322;19323 19321 6 DIIHFFR Unmodified 946.50249 0.5024864 1130 P49959;P49959-2;P49959-3 MRE11A Double-strand break repair protein MRE11A yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 56.266 56.228 3 0.00051799 16134 20211116_3447_TMUAki_TMT10x_S_F8 138.07 73.298 602700 988440 30778 1054400 645860 698700 606260 872650 869060 835270 780840 561400 922570 79257 1065700 620150 737630 625160 877350 869490 817310 755980 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 602700 988440 30778 1054400 645860 698700 606260 872650 869060 835270 780840 561400 922570 79257 1065700 620150 737630 625160 877350 869490 817310 755980 1 1 1 1 1 1 1 1 1 1 1 640140000 0 640140000 2790 1130 2610 16108;16109 19324;19325 19325 2 DIILPFR Unmodified 872.51199 0.51198846 2428 Q96CW1;Q96CW1-2 AP2M1 AP-2 complex subunit mu yes no 0 0 0 0 By MS/MS 7 0 1 1 64.691 65.124 2 0.0054826 22035 20211116_3446_TMUAki_TMT10x_S_F7 108.24 11.167 3862000 6492100 14395 6092500 4953900 4517600 4132400 4099500 4201300 4318300 4977400 3596000 6056300 348900 6220000 4730200 4690000 4236800 4195800 4298700 4208500 4777500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3862000 6492100 14395 6092500 4953900 4517600 4132400 4099500 4201300 4318300 4977400 3596000 6056300 348900 6220000 4730200 4690000 4236800 4195800 4298700 4208500 4777500 1 1 1 1 1 1 1 1 1 1 1 370960000 0 370960000 2791 2428 2611 16110 19326 19326 1 DIILREDLEELQAR Unmodified 1711.9105 0.9104633 3121 Q9UHQ9 CYB5R1 NADH-cytochrome b5 reductase 1 yes yes 0 0 0 1 By MS/MS 1 0 1 1 62.798 62.533 3 2.3394E-06 21185 20211116_3439_TMUAki_TMT10x_S_F1 87.99 64.754 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2792 3121 2612 16111 19327 19327 1 DIINEEEVQFLK Unmodified 1475.7508 0.75077476 1104 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 2 0.866 3 2 3 5 3 73.415 73.271 2;3 1.6358E-19 25091 20211116_3429_TMUAki_TMT10x_P_F2 229.68 192.34 29600000 44764000 219670 49568000 34678000 47236000 36646000 26181000 27483000 31489000 35461000 27561000 41787000 2627700 50193000 33307000 47791000 36785000 27841000 28643000 30535000 33961000 9 9 4 9 9 9 9 9 9 9 9 21536000 31363000 219670 35071000 25256000 38775000 26745000 18436000 19536000 21897000 24642000 20053000 29278000 2014000 35572000 24265000 38816000 26828000 19875000 20371000 21243000 23613000 6 6 4 6 6 6 6 6 6 6 6 8064400 13401000 0 14497000 9422100 8460700 9900700 7745000 7947100 9591800 10819000 7508100 12509000 613650 14621000 9041600 8975400 9957200 7965900 8272200 9291700 10348000 3 3 0 3 3 3 3 3 3 3 3 3502100000 2069600000 1432400000 2793 1104 2613 16112;16113;16114;16115;16116;16117;16118;16119 19328;19329;19330;19331;19332;19333;19334;19335;19336;19337 19333 10 DIIRQPSEEEIIK Unmodified 1568.841 0.84098675 1772 Q15121;Q15121-2 PEA15 Astrocytic phosphoprotein PEA-15 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 47.817 47.991 3 1.4919E-14 14012 20211116_3442_TMUAki_TMT10x_S_F4 163.99 124.33 4247800 7183100 33192 8699700 3458300 2843600 2853500 4397800 5022600 4104300 5739300 3955400 6708300 368050 8680400 3302500 3293000 2993200 4384200 5040100 4020600 5514300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4247800 7183100 33192 8699700 3458300 2843600 2853500 4397800 5022600 4104300 5739300 3955400 6708300 368050 8680400 3302500 3293000 2993200 4384200 5040100 4020600 5514300 2 2 1 2 2 2 2 2 2 2 2 263010000 0 263010000 2794 1772 2614 16120;16121 19338;19339;19340 19339 3 DIISDTSGDFRK Unmodified 1352.6572 0.65720872 537 P07355;P07355-2;A6NMY6 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 0 0 0 1 By MS/MS 4 0 1 1 46.429 46.619 3 4.4681E-06 13409 20211116_3442_TMUAki_TMT10x_S_F4 104.04 74.701 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2795 537 2615 16122 19341 19341 1 DIISIAEDEDLR Unmodified 1387.6831 0.68308912 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 By MS/MS By MS/MS 1.57 0.728 4 2 1 3 4 66.424 66.217 2;3 1.9362E-38 20621 20211116_3428_TMUAki_TMT10x_P_F1 282.39 211.05 31015000 49290000 120150 47329000 33074000 52286000 38771000 34609000 35023000 38535000 40457000 28879000 45986000 2653700 48496000 31860000 52562000 38913000 36198000 35987000 37473000 38860000 8 8 5 8 8 8 8 8 8 8 8 18275000 28495000 31850 27636000 21518000 38198000 24246000 20234000 20809000 22498000 23480000 17015000 26586000 1542700 28412000 20699000 37858000 24345000 21547000 21415000 21879000 22567000 4 4 2 4 4 4 4 4 4 4 4 12741000 20795000 88299 19693000 11557000 14088000 14525000 14375000 14214000 16037000 16978000 11863000 19400000 1111000 20084000 11161000 14705000 14568000 14651000 14572000 15594000 16292000 4 4 3 4 4 4 4 4 4 4 4 4961400000 2451500000 2509900000 2796 647 2616 16123;16124;16125;16126;16127;16128;16129 19342;19343;19344;19345;19346;19347;19348;19349 19343 8 DIKDTTVGTLSQR Unmodified 1432.7522 0.75217174 1162 P51665 PSMD7 26S proteasome non-ATPase regulatory subunit 7 yes yes 0 0 0 1 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 42.072 42.175 3 1.8021E-09 10361 20211116_3434_TMUAki_TMT10x_P_F6 134.88 112.97 4860000 7800100 5006.5 7930600 9964700 8653900 5459300 8892100 9959400 6690700 8342100 4525000 7278800 457790 8092100 9440300 8776800 5912500 8963000 9877700 6625200 8097400 3 3 1 3 3 3 3 3 3 3 3 2083400 3108000 5006.5 3294600 7015400 6125300 2944100 3740700 4111800 2722600 3348400 1939900 2900800 246470 3390200 6624700 6011900 3235400 3893200 4104800 2700900 3253700 1 1 1 1 1 1 1 1 1 1 1 2776600 4692000 0 4636000 2949300 2528600 2515200 5151400 5847600 3968100 4993700 2585100 4378000 211320 4701900 2815600 2764900 2677100 5069800 5772800 3924200 4843700 2 2 0 2 2 2 2 2 2 2 2 312290000 194190000 118100000 2797 1162 2617 16130;16131;16132 19350;19351;19352;19353 19350 4 DIKPAATHHYLVVPK Unmodified 1687.941 0.94097556 2904 Q9NQE9 HINT3 Histidine triad nucleotide-binding protein 3 yes yes 0 0 0 1 By MS/MS By matching 1.5 0.5 1 1 1 1 38.975 39.018 5 0.0020323 9603 20211116_3428_TMUAki_TMT10x_P_F1 63.128 47.493 1029900 1700300 0 1627700 2012100 1753000 1228500 862160 1064800 875130 1195500 958750 1586300 78968 1667600 1908200 1758100 1282000 921930 1095100 854160 1149200 1 1 0 1 1 1 1 1 1 1 1 1029900 1700300 0 1627700 2012100 1753000 1228500 862160 1064800 875130 1195500 958750 1586300 78968 1667600 1908200 1758100 1282000 921930 1095100 854160 1149200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 90415000 81220000 9194800 2798 2904 2618 16133;16134 19354 19354 1 DIKPANVFITATGVVK Unmodified 1671.956 0.95595693 2282 Q8TDX7;Q9HC98;Q9HC98-3;Q9HC98-4;Q9HC98-2 NEK7;NEK6 Serine/threonine-protein kinase Nek7;Serine/threonine-protein kinase Nek6 yes no 0 0 0 1 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 66.586 66.231 3 2.6401E-06 22211 20211116_3429_TMUAki_TMT10x_P_F2 92.211 73.136 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2799 2282 2619 16135;16136;16137 19355;19356;19357 19355 3 DIKPENLLLDERDNLK Unmodified 1924.0266 0.026555687 130 O14757;O14757-2;O14757-3 CHEK1 Serine/threonine-protein kinase Chk1 yes no 0 0 0 2 By matching By MS/MS 4 0 2 1 1 57.709 57.744 4 0.096371 18089 20211116_3442_TMUAki_TMT10x_S_F4 37.175 19.258 3023500 5114800 0 5173400 3447800 2753600 2946000 3553300 3333700 3338400 3942500 2815200 4772900 251080 5237400 3292900 2972400 3026500 3565900 3396100 3269300 3784300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3023500 5114800 0 5173400 3447800 2753600 2946000 3553300 3333700 3338400 3942500 2815200 4772900 251080 5237400 3292900 2972400 3026500 3565900 3396100 3269300 3784300 1 1 0 1 1 1 1 1 1 1 1 846380000 505140000 341240000 2800 130 2620 16138;16139 19358 19358 1 DIKPENLLLGLK Unmodified 1351.8075 0.80750177 2473 Q96GD4;Q96GD4-4;Q96GD4-2;Q96GD4-5 AURKB Aurora kinase B yes no 0 0 0 1 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 70.338 70.521 3 3.8431E-07 21976 20211116_3447_TMUAki_TMT10x_S_F8 121.76 104.32 20010000 32313000 536100 33393000 21386000 33453000 24032000 28136000 23868000 24701000 26268000 18636000 30155000 2177900 33990000 20605000 33957000 24234000 28773000 24374000 24266000 25266000 3 3 3 3 3 3 3 3 3 3 3 7641700 11947000 217140 11300000 9760700 21011000 10817000 17810000 13493000 13239000 11581000 7116800 11145000 865600 11719000 9398700 20733000 10999000 18133000 13542000 13119000 11231000 1 1 1 1 1 1 1 1 1 1 1 12369000 20366000 318960 22092000 11625000 12442000 13216000 10326000 10375000 11461000 14687000 11519000 19010000 1312300 22272000 11206000 13223000 13234000 10640000 10832000 11147000 14034000 2 2 2 2 2 2 2 2 2 2 2 1521900000 465630000 1056300000 2801 2473 2621 16140;16141;16142 19359;19360;19361 19361 3 DIKPIIK Unmodified 825.53239 0.53238955 1683 Q14151 SAFB2 Scaffold attachment factor B2 yes yes 0 0 0 1 By MS/MS 8 0 1 1 44.611 44.581 3 0.0074369 11422 20211116_3447_TMUAki_TMT10x_S_F8 86.011 3.0055 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2802 1683 2622 16143 19362 19362 1 DIKPQLELIEDEEK Unmodified 1697.8723 0.87234646 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 62.314 62.08 3 8.8121E-24 19269 20211116_3431_TMUAki_TMT10x_P_F4 167.71 145.87 117560000 181720000 1429700 221510000 120710000 122470000 103190000 70851000 94308000 90589000 123710000 109460000 169720000 10696000 221690000 115360000 129720000 105310000 75233000 97374000 87661000 118430000 13 13 7 13 13 13 13 13 13 13 13 52654000 77942000 932460 97598000 71584000 83068000 55269000 33316000 42089000 40513000 52484000 49032000 72802000 5347200 97961000 68274000 84402000 56507000 36600000 43764000 39271000 50307000 6 6 4 6 6 6 6 6 6 6 6 64901000 103780000 497230 123910000 49130000 39404000 47921000 37535000 52219000 50076000 71223000 60431000 96916000 5349300 123730000 47090000 45313000 48804000 38633000 53610000 48390000 68118000 7 7 3 7 7 7 7 7 7 7 7 8955600000 4724200000 4231400000 2803 1057 2623 16144;16145;16146;16147;16148;16149;16150;16151 19363;19364;19365;19366;19367;19368;19369;19370;19371;19372;19373;19374;19375;19376 19369 14 DIKPQNLLLDPDTAVLK Unmodified 1892.0619 0.06187856 1124 P49841;P49841-2 GSK3B Glycogen synthase kinase-3 beta yes no 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 71.265 71.507 3 9.2261E-11 24683 20211116_3446_TMUAki_TMT10x_S_F7 125.12 100.84 6344800 11340000 138710 10202000 8203800 7824500 7845600 7370700 6420800 7076700 8395900 5908700 10577000 681340 10453000 7865500 8107500 7932700 7508100 6664500 6923600 8038100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6344800 11340000 138710 10202000 8203800 7824500 7845600 7370700 6420800 7076700 8395900 5908700 10577000 681340 10453000 7865500 8107500 7932700 7508100 6664500 6923600 8038100 2 2 2 2 2 2 2 2 2 2 2 487340000 0 487340000 2804 1124 2624 16152;16153 19377;19378;19379 19378 3 DIKSDNVLLGMEGSVK Oxidation (M) 1719.8713 0.8713006 1606 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes yes 0 0 1 1 By MS/MS 6 0 1 1 52.04 52.141 3 0.016294 14363 20211116_3434_TMUAki_TMT10x_P_F6 50.387 23.052 1558900 2531500 32694 2818900 3388000 4786900 2159500 2986200 3241100 2419800 2654600 1451800 2363300 185330 2884800 3219600 4714700 2288200 3110000 3229100 2386700 2578900 1 1 1 1 1 1 1 1 1 1 1 1558900 2531500 32694 2818900 3388000 4786900 2159500 2986200 3241100 2419800 2654600 1451800 2363300 185330 2884800 3219600 4714700 2288200 3110000 3229100 2386700 2578900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 212240000 212240000 0 2805 1606 2625 16154 19380 19380 2156 1 DILADLIPK Unmodified 996.58555 0.58554733 330 O75390 CS Citrate synthase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5.55 0.988 2 3 4 2 6 5 78.223 78.229 2;3 1.5991E-05 25373 20211116_3445_TMUAki_TMT10x_S_F6 157.91 100.81 115730000 183870000 699530 185550000 101820000 120080000 116700000 65637000 71406000 79149000 116270000 107760000 171580000 9867800 188190000 98038000 125140000 116190000 69887000 76217000 76744000 110780000 10 10 6 10 10 10 10 10 10 10 10 59795000 90273000 85695 91731000 43004000 64985000 49889000 32705000 36886000 39946000 57879000 55674000 84240000 4658100 93078000 41403000 67127000 49842000 35098000 38839000 38715000 55184000 5 5 2 5 5 5 5 5 5 5 5 55938000 93598000 613840 93818000 58820000 55091000 66809000 32932000 34519000 39203000 58394000 52088000 87338000 5209700 95115000 56635000 58014000 66350000 34789000 37378000 38029000 55591000 5 5 4 5 5 5 5 5 5 5 5 12661000000 5232300000 7429000000 2806 330 2626 16155;16156;16157;16158;16159;16160;16161;16162;16163;16164;16165 19381;19382;19383;19384;19385;19386;19387;19388;19389;19390 19388 10 DILAQVK Unmodified 785.4647 0.46470391 3032 Q9NZI8;Q9NZI8-2;Q15517 IGF2BP1;CDSN Insulin-like growth factor 2 mRNA-binding protein 1;Corneodesmosin yes no 0 0 0 0 By MS/MS 6 0 1 1 55.417 55.507 2 0.0060912 16060 20211116_3445_TMUAki_TMT10x_S_F6 105.2 2.4814 6103600 9596400 10636 9569900 6205700 6063600 6145100 7496000 7317600 6556300 8317300 5683100 8954400 517370 9712300 5949500 6425700 6272700 7521000 7428600 6442000 7992500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6103600 9596400 10636 9569900 6205700 6063600 6145100 7496000 7317600 6556300 8317300 5683100 8954400 517370 9712300 5949500 6425700 6272700 7521000 7428600 6442000 7992500 1 1 1 1 1 1 1 1 1 1 1 284850000 0 284850000 2807 3032 2627 16166 19391 19391 1 DILATTPPPVQPPILTITCPTFGDWAQLAPAVPGLQGALR Unmodified 4192.2395 0.23947236 1961 Q66K74;Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain yes no 0 0 0 0 By MS/MS 4 0 1 1 83.25 83.257 4 0.01922 28023 20211116_3431_TMUAki_TMT10x_P_F4 34.993 26.229 125350 227560 984.17 228450 142920 276770 161950 139820 135140 181650 175450 116720 212340 11556 233720 137580 275900 162450 150320 140080 175680 168000 1 1 1 1 1 1 1 1 1 1 1 125350 227560 984.17 228450 142920 276770 161950 139820 135140 181650 175450 116720 212340 11556 233720 137580 275900 162450 150320 140080 175680 168000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35304000 35304000 0 2808 1961 2628 16167 19392 19392 1 DILCGAADEVLAVLK Unmodified 1585.8385 0.83854391 352 O75643;O75643-2 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 0 0 0 0 By MS/MS By MS/MS 4.33 1.41 1 2 2 1 3 3 6 81.515 81.51 2;3 8.3616E-07 27710 20211116_3442_TMUAki_TMT10x_S_F4 111.12 91.538 9247900 14035000 48834 14192000 7606900 11320000 11426000 5757400 6347300 7747500 9143900 8610600 13097000 732860 14425000 7389100 11584000 11233000 6194000 6778800 7484600 8734200 5 5 2 5 5 5 5 5 5 5 5 2924800 4182900 12980 4208000 2583400 4449100 2782100 1970000 2081100 2762500 3044600 2723200 3903200 236710 4294700 2482000 4461900 2790000 2151800 2182000 2665400 2907200 2 2 1 2 2 2 2 2 2 2 2 6323100 9852100 35853 9984400 5023500 6870600 8643600 3787300 4266200 4985000 6099200 5887400 9193500 496150 10130000 4907100 7122100 8442800 4042100 4596800 4819300 5826900 3 3 1 3 3 3 3 3 3 3 3 1259700000 400650000 859090000 2809 352 2629 16168;16169;16170;16171;16172;16173;16174;16175;16176 19393;19394;19395;19396;19397;19398;19399 19397 7 DILETHLR Unmodified 995.53999 0.53999412 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS 4 0 1 1 36.623 36.755 3 0.0012121 9387 20211116_3442_TMUAki_TMT10x_S_F4 101.54 73.368 95236 148850 5312 166170 103390 95615 121390 88794 105240 96886 136870 88713 138950 12960 167240 99912 101600 121690 90866 108890 94291 131060 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 95236 148850 5312 166170 103390 95615 121390 88794 105240 96886 136870 88713 138950 12960 167240 99912 101600 121690 90866 108890 94291 131060 1 1 1 1 1 1 1 1 1 1 1 8565600 0 8565600 2810 1433 2630 16177 19400 19400 1 DILFPYIEENVK Unmodified 1478.7657 0.76569654 3126 Q9UHY7 ENOPH1 Enolase-phosphatase E1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.25 0.433 3 1 1 3 78.336 78.271 2;3 1.5881E-11 26375 20211116_3442_TMUAki_TMT10x_S_F4 163.12 119.35 13669000 22939000 209930 22085000 14326000 16545000 16659000 11238000 11304000 12825000 15724000 12729000 21402000 1338100 22508000 13807000 17077000 16611000 11742000 11891000 12460000 15031000 4 4 4 4 4 4 4 4 4 4 4 3240000 5129400 61648 4602600 2762600 4965800 3236000 2725500 2660900 2931500 3376800 3017200 4784300 319380 4738000 2664500 4986100 3239900 2890300 2757600 2854600 3235300 1 1 1 1 1 1 1 1 1 1 1 10429000 17810000 148280 17482000 11563000 11579000 13423000 8512700 8643200 9893700 12347000 9711500 16617000 1018700 17770000 11143000 12091000 13371000 8851200 9133500 9605800 11796000 3 3 3 3 3 3 3 3 3 3 3 1972200000 528520000 1443600000 2811 3126 2631 16178;16179;16180;16181 19401;19402;19403;19404 19403 4 DILIACR Unmodified 859.45857 0.45857268 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 43.69 43.705 2 0.011633 11899 20211116_3431_TMUAki_TMT10x_P_F4 94.777 51.315 6342100 9839500 19817 11071000 7105500 6364100 5944800 6323900 6795900 5991600 8029000 5905000 9185900 520830 11137000 6782900 6772800 6117100 6421800 6920200 5865400 7707100 3 3 1 3 3 3 3 3 3 3 3 799470 1332300 0 1444700 1735900 1634600 1065900 952210 878890 893190 1101000 744300 1243600 69589 1468700 1646900 1638200 1110400 1000800 910190 874770 1055200 1 1 0 1 1 1 1 1 1 1 1 5542600 8507200 19817 9626500 5369600 4729500 4878900 5371700 5917000 5098400 6928000 5160700 7942300 451240 9668400 5135900 5134600 5006700 5421000 6010000 4990600 6651900 2 2 1 2 2 2 2 2 2 2 2 368680000 25148000 343530000 2812 1018 2632 16182;16183;16184;16185;16186;16187 19405;19406;19407;19408 19405 4 DILIDPIR Unmodified 953.55458 0.55458155 2125 Q86XP3;Q86XP3-2 DDX42 ATP-dependent RNA helicase DDX42 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 59.586 59.595 2 0.0013921 18785 20211116_3442_TMUAki_TMT10x_S_F4 122.74 48.303 6321200 10478000 52847 11345000 8442100 10148000 7227600 7373600 6987500 7223500 8957600 5886000 9780300 603020 11495000 8067400 10349000 7387300 7632500 7189000 7061000 8580000 2 2 2 2 2 2 2 2 2 2 2 3202900 4767400 13832 5423200 5165000 6926300 4055500 3721700 3504300 3578600 4640600 2982400 4451000 305920 5508800 4925400 6891300 4154600 3941400 3629500 3501000 4441400 1 1 1 1 1 1 1 1 1 1 1 3118200 5710600 39015 5922200 3277100 3221500 3172100 3652000 3483200 3644900 4317000 2903700 5329400 297110 5986300 3142000 3458200 3232700 3691200 3559500 3560100 4138600 1 1 1 1 1 1 1 1 1 1 1 702830000 450970000 251860000 2813 2125 2633 16188;16189;16190;16191 19409;19410;19411;19412 19412 4 DILIQYDR Unmodified 1034.5397 0.53965977 1340 P62249 RPS16 40S ribosomal protein S16 yes yes 0 0 0 0 By MS/MS By MS/MS 3.4 1.36 1 2 2 2 3 5 5 51.172 51.177 2 0.00041038 17574 20211116_3441_TMUAki_TMT10x_S_F3 141.48 88.314 46889000 68754000 151480 95159000 52039000 51937000 43316000 42074000 43332000 42676000 51036000 43657000 64253000 3834600 94567000 49670000 55354000 44394000 43294000 44355000 41655000 48994000 8 8 2 8 8 8 8 8 8 8 8 20829000 29396000 0 42613000 30067000 33166000 20697000 16706000 17462000 17875000 20753000 19394000 27479000 1819600 42398000 28591000 34000000 21383000 17851000 18023000 17409000 19918000 2 2 0 2 2 2 2 2 2 2 2 26059000 39358000 151480 52546000 21973000 18771000 22620000 25368000 25870000 24801000 30283000 24263000 36774000 2015000 52169000 21079000 21354000 23011000 25443000 26333000 24246000 29076000 6 6 2 6 6 6 6 6 6 6 6 5516200000 2782200000 2734000000 2814 1340 2634 16192;16193;16194;16195;16196;16197;16198;16199;16200;16201 19413;19414;19415;19416;19417;19418;19419;19420;19421;19422;19423 19420 11 DILLQQQQQLGHGGPEAAPR Unmodified 2155.1134 0.11341363 2088 Q7Z5L9;Q7Z5L9-2 IRF2BP2 Interferon regulatory factor 2-binding protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 1 3 44.642 44.802 3 4.2885E-19 11454 20211116_3444_TMUAki_TMT10x_S_F5 158.52 136.36 4171600 6916600 15376 9216400 4789900 4485400 3375200 5972300 6763200 5019100 6385600 3884200 6462500 352810 9169000 4557100 4894600 3602400 5968600 6718700 4941200 6171700 5 5 2 5 5 5 5 5 5 5 5 827190 1253300 0 1646500 2248700 2234700 1281200 1166500 1232700 961630 1140100 770140 1171000 82033 1660700 2131400 2216300 1348600 1233800 1252800 947620 1102600 1 1 0 1 1 1 1 1 1 1 1 3344400 5663200 15376 7569800 2541200 2250600 2094000 4805800 5530600 4057500 5245600 3114000 5291500 270770 7508300 2425700 2678300 2253800 4734800 5465900 3993600 5069100 4 4 2 4 4 4 4 4 4 4 4 766970000 254900000 512070000 2815 2088 2635 16202;16203;16204;16205 19424;19425;19426;19427;19428 19427 5 DILLRPELEELR Unmodified 1494.8406 0.84059282 465 P00387;P00387-2;P00387-3 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 0 0 0 1 By MS/MS By MS/MS 3.6 0.917 1 4 3 2 4 6 60.777 60.64 2;3 9.9129E-15 21481 20211116_3441_TMUAki_TMT10x_S_F3 161.67 110.1 70143000 111510000 654720 116230000 82345000 95473000 75358000 59129000 61131000 63785000 80255000 65313000 104070000 6389100 117930000 78807000 97725000 76364000 62092000 63491000 62104000 76827000 11 11 7 11 11 11 11 11 11 11 11 38802000 59001000 282000 60879000 52923000 68244000 43734000 32843000 34147000 35766000 43421000 36130000 55061000 3588300 62084000 50526000 68273000 44545000 35267000 35487000 34811000 41600000 6 6 4 6 6 6 6 6 6 6 6 31341000 52514000 372720 55349000 29421000 27229000 31624000 26286000 26984000 28019000 36833000 29183000 49012000 2800800 55845000 28281000 29452000 31819000 26825000 28004000 27293000 35227000 5 5 3 5 5 5 5 5 5 5 5 9737900000 4869600000 4868300000 2816 465 2636 16206;16207;16208;16209;16210;16211;16212;16213;16214;16215 19429;19430;19431;19432;19433;19434;19435;19436;19437;19438;19439;19440 19436 12 DILLVNDHLLNFVR Unmodified 1679.9359 0.93589019 2945 Q9NTI5;Q9NTI5-2;Q9NTI5-3 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 76.58 76.589 3 3.7185E-30 24423 20211116_3447_TMUAki_TMT10x_S_F8 209.22 187.13 2273300 3693700 11492 2814200 1982800 4558600 2854100 2526600 2551300 2955800 2688200 2116700 3443300 195110 2959100 1923800 4490700 2840100 2684200 2613600 2869100 2589000 1 1 1 1 1 1 1 1 1 1 1 2273300 3693700 11492 2814200 1982800 4558600 2854100 2526600 2551300 2955800 2688200 2116700 3443300 195110 2959100 1923800 4490700 2840100 2684200 2613600 2869100 2589000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 841620000 841620000 0 2817 2945 2637 16216;16217;16218 19441;19442;19443 19443 3 DILPCLDGYLK Unmodified 1305.6639 0.663874 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 77.876 77.898 2 0.003255 25277 20211116_3445_TMUAki_TMT10x_S_F6 77.14 47.667 3831300 6364700 61769 6300600 4404700 4072700 4595500 3123100 2836500 3351500 4466100 3567700 5938700 383240 6398800 4232000 4265100 4597000 3230100 3020400 3263900 4257800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3831300 6364700 61769 6300600 4404700 4072700 4595500 3123100 2836500 3351500 4466100 3567700 5938700 383240 6398800 4232000 4265100 4597000 3230100 3020400 3263900 4257800 1 1 1 1 1 1 1 1 1 1 1 1243000000 0 1243000000 2818 1433 2638 16219;16220 19444 19444 1 DILQNVFKLEK Unmodified 1345.7606 0.76055158 1041 P46063 RECQL ATP-dependent DNA helicase Q1 yes yes 0 0 0 1 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 71.417 71.396 3 1.5279E-08 22717 20211116_3428_TMUAki_TMT10x_P_F1 152.74 96.516 14794000 21058000 85868 27596000 12307000 19313000 14284000 11244000 11886000 12194000 15103000 13775000 19674000 1271700 27566000 11856000 20004000 14311000 11868000 12311000 11870000 14469000 3 3 3 3 3 3 3 3 3 3 3 10833000 15272000 74523 19940000 9547800 16070000 10415000 8002900 8532900 9043200 10732000 10087000 14268000 949600 19955000 9181200 16429000 10461000 8575000 8841100 8789200 10284000 2 2 2 2 2 2 2 2 2 2 2 3960800 5786300 11345 7655300 2759500 3242500 3868900 3241300 3353600 3151000 4371000 3688000 5406200 322120 7611600 2674500 3575400 3850400 3292900 3470400 3081100 4185100 1 1 1 1 1 1 1 1 1 1 1 1220500000 933000000 287500000 2819 1041 2639 16221;16222;16223 19445;19446;19447 19445 3 DILVATDVAGR Unmodified 1128.6139 0.61388734 2677 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 51.49 51.256 2 1.7433E-09 16539 20211116_3430_TMUAki_TMT10x_P_F3 160 97.163 6812600 10145000 8168.8 11964000 9277900 9183300 6952600 7899800 8248300 7465200 7782900 6342700 9472900 541460 12035000 8833800 9498000 7214000 8083700 8318000 7308800 7522300 2 2 1 2 2 2 2 2 2 2 2 3075300 4742800 8168.8 5132600 5369900 6421500 4069300 3441100 3726400 3484500 3922700 2863500 4427000 294720 5227800 5116700 6395300 4185000 3650400 3813000 3401400 3778000 1 1 1 1 1 1 1 1 1 1 1 3737300 5401900 0 6831200 3907900 2761800 2883300 4458600 4521900 3980700 3860300 3479200 5045900 246740 6807200 3717100 3102700 3028900 4433300 4505000 3907400 3744300 1 1 0 1 1 1 1 1 1 1 1 258180000 138050000 120140000 2820 2677 2640 16224;16225 19448;19449 19448 2 DINAYNCEEPTEKLPFPIIDDR Unmodified 2648.2428 0.24283241 859 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 0 1 By MS/MS By MS/MS 3.75 1.48 1 4 4 4 4 3 11 9 73.157 73.059 3;4 9.4232E-36 23806 20211116_3431_TMUAki_TMT10x_P_F4 196.1 180.4 185700000 316090000 1103900 259290000 219070000 312500000 239190000 202150000 190040000 215560000 235210000 172910000 294730000 12974000 269330000 210560000 312600000 240040000 211500000 197080000 209970000 225500000 39 39 15 39 39 39 39 39 39 39 39 112540000 182810000 978340 151970000 112170000 215300000 138060000 115560000 112650000 127470000 136210000 104790000 170460000 8212300 158160000 108230000 213190000 137900000 122880000 116550000 124010000 130670000 25 25 11 25 25 25 25 25 25 25 25 73166000 133280000 125600 107320000 106900000 97200000 101120000 86592000 77389000 88083000 98999000 68121000 124270000 4761500 111170000 102330000 99407000 102140000 88621000 80535000 85965000 94832000 14 14 4 14 14 14 14 14 14 14 14 28116000000 16079000000 12037000000 2821 859 2641 16226;16227;16228;16229;16230;16231;16232;16233;16234;16235;16236;16237;16238;16239;16240;16241;16242;16243;16244;16245 19450;19451;19452;19453;19454;19455;19456;19457;19458;19459;19460;19461;19462;19463;19464;19465;19466;19467;19468;19469;19470;19471;19472;19473;19474;19475;19476;19477;19478;19479;19480;19481;19482;19483;19484;19485;19486;19487;19488;19489 19464 40 DINAYNCEEPTEKLPFPIIDDRNR Unmodified 2918.3869 0.38687088 859 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 0 2 By MS/MS By MS/MS 5 0.707 1 2 1 3 1 64.475 64.55 4 5.4779E-22 19467 20211116_3444_TMUAki_TMT10x_S_F5 141.45 126.32 12012000 21609000 228920 18435000 18066000 21664000 14731000 18779000 17465000 16469000 18173000 11185000 20151000 1232400 19080000 17248000 21806000 15201000 19170000 17673000 16179000 17509000 5 5 4 5 5 5 5 5 5 5 5 7249400 12278000 133040 10753000 8230900 15887000 9593200 11480000 10301000 9802100 10890000 6750400 11451000 677210 11154000 7930500 15769000 9681500 11844000 10469000 9642300 10487000 3 3 2 3 3 3 3 3 3 3 3 4762400 9330200 95873 7682600 9834800 5777000 5137500 7299100 7164100 6666700 7283600 4435000 8699900 555230 7925400 9317700 6036900 5519600 7325400 7203800 6537100 7022500 2 2 2 2 2 2 2 2 2 2 2 3639200000 2435900000 1203300000 2822 859 2642 16246;16247;16248;16249 19490;19491;19492;19493;19494 19494 5 DINESDEVEVYSR Unmodified 1553.6845 0.68454569 1532 Q06787-8;Q06787-6;Q06787-5;Q06787;Q06787-7;Q06787-2;Q06787-4;Q06787-9;Q06787-3;Q06787-11;Q06787-10 FMR1 Fragile X mental retardation protein 1 yes no 0 0 0 0 By MS/MS 1 0 1 1 44.197 43.986 2 1.3006E-41 13635 20211116_3439_TMUAki_TMT10x_S_F1 256.31 229.19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2823 1532 2643 16250 19495 19495 1 DINLDVNR Unmodified 957.48796 0.48795855 820 P26640 VARS Valine--tRNA ligase yes yes 0 0 0 0 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 3 4 41.741 41.63 2 0.00044057 12264 20211116_3429_TMUAki_TMT10x_P_F2 149.82 16.581 13445000 22363000 51391 23818000 17053000 18847000 13711000 17722000 17950000 15154000 18272000 12519000 20872000 1104700 24121000 16263000 19481000 14214000 17999000 18087000 14906000 17616000 7 7 3 7 7 7 7 7 7 7 7 5348900 8363200 20328 9015600 10125000 12210000 7344500 6623100 6229800 5672100 7276200 4980000 7806200 465090 9199100 9635100 12116000 7560700 6987400 6423700 5578900 6986700 3 3 1 3 3 3 3 3 3 3 3 8096500 14000000 31063 14803000 6928100 6636300 6366700 11099000 11720000 9481500 10996000 7538500 13066000 639600 14922000 6627900 7364600 6653100 11011000 11663000 9326800 10630000 4 4 2 4 4 4 4 4 4 4 4 1156200000 714070000 442160000 2824 820 2644 16251;16252;16253;16254;16255;16256;16257 19496;19497;19498;19499;19500;19501;19502;19503 19497 8 DINLQDEDWNEFNDINK Unmodified 2120.9287 0.92869214 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.756 2 3 2 3 4 75.307 75.211 3 6.2263E-22 24277 20211116_3428_TMUAki_TMT10x_P_F1 173.03 163.56 30435000 49953000 478380 49635000 35704000 43518000 39751000 22393000 22216000 27635000 36727000 28341000 46610000 2984500 50567000 34362000 44236000 39566000 23991000 23883000 26774000 34980000 8 8 6 8 8 8 8 8 8 8 8 15492000 25259000 139080 24212000 17449000 27586000 21678000 10875000 10505000 13940000 17811000 14425000 23565000 1408100 24825000 16844000 27519000 21422000 11992000 11435000 13488000 16956000 4 4 3 4 4 4 4 4 4 4 4 14943000 24693000 339310 25423000 18255000 15933000 18073000 11518000 11711000 13695000 18915000 13916000 23044000 1576300 25742000 17518000 16717000 18145000 11998000 12448000 13285000 18024000 4 4 3 4 4 4 4 4 4 4 4 2520600000 1388600000 1132000000 2825 1997 2645 16258;16259;16260;16261;16262;16263;16264 19504;19505;19506;19507;19508;19509;19510;19511;19512 19505 9 DINQEVYNFLATAGAK Unmodified 1752.8683 0.86826413 2605 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 1 3 78.322 78.297 3 6.2626E-08 25774 20211116_3447_TMUAki_TMT10x_S_F8 116.86 87.85 11019000 18712000 113570 17473000 12279000 12935000 14243000 8048500 7815500 9092300 12565000 10260000 17455000 928830 17845000 11822000 13347000 14146000 8461000 8400800 8837000 11974000 4 4 2 4 4 4 4 4 4 4 4 3083900 5100700 65629 4868700 2689200 4617100 3390500 2325400 2569400 2774400 3432200 2871900 4758700 311310 4979500 2600200 4667600 3377100 2493400 2680500 2691100 3284200 1 1 1 1 1 1 1 1 1 1 1 7935300 13611000 47943 12604000 9589300 8317800 10853000 5723100 5246100 6318000 9133000 7388000 12697000 617520 12865000 9222300 8679700 10769000 5967600 5720300 6145900 8690000 3 3 1 3 3 3 3 3 3 3 3 2210400000 503110000 1707300000 2826 2605 2646 16265;16266;16267;16268 19513;19514;19515;19516 19516 4 DIPFSAIYFPCYAHVK Unmodified 1926.9338 0.93384128 3141 Q9UJS0;Q9UJS0-2 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes no 0 0 0 0 By MS/MS By MS/MS 3.86 2.64 4 1 2 3 4 76.142 76.067 3;4 2.0444E-15 26091 20211116_3429_TMUAki_TMT10x_P_F2 152.99 36.154 55224000 95444000 667870 89830000 65739000 89567000 67258000 59551000 54302000 60632000 65927000 51423000 89038000 5235000 92034000 63105000 90587000 67742000 62095000 56222000 59172000 63237000 15 15 9 15 15 15 15 15 15 15 15 31284000 53831000 449420 51027000 33392000 61596000 37698000 33773000 30185000 34021000 35729000 29132000 50220000 3022000 52412000 32152000 61473000 37781000 35750000 31234000 33217000 34295000 7 7 5 7 7 7 7 7 7 7 7 23940000 41612000 218450 38803000 32348000 27971000 29560000 25778000 24116000 26611000 30198000 22291000 38818000 2213000 39622000 30953000 29114000 29961000 26345000 24988000 25955000 28943000 8 8 4 8 8 8 8 8 8 8 8 6358800000 3812100000 2546700000 2827 3141 2647 16269;16270;16271;16272;16273;16274;16275 19517;19518;19519;19520;19521;19522;19523;19524;19525;19526;19527;19528;19529;19530;19531 19517 15 DIPGLTDTTVPR Unmodified 1283.6721 0.67213051 1365 P62753 RPS6 40S ribosomal protein S6 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.866 1 3 3 1 5 3 54.099 54.041 2;3 2.4261E-16 17634 20211116_3430_TMUAki_TMT10x_P_F3 202.56 140.78 29147000 47221000 133870 59337000 47631000 51361000 32356000 33014000 31947000 31101000 39742000 27138000 44108000 2517700 59559000 45277000 52403000 33606000 34435000 32795000 30454000 38097000 9 9 3 9 9 9 9 9 9 9 9 18682000 30010000 133870 37661000 39714000 44590000 25686000 20895000 20678000 19853000 24640000 17394000 28031000 1752300 37983000 37721000 44466000 26633000 22409000 21396000 19433000 23647000 6 6 3 6 6 6 6 6 6 6 6 10465000 17211000 0 21676000 7917500 6770200 6670400 12119000 11269000 11248000 15102000 9743100 16076000 765400 21575000 7556000 7936700 6973600 12026000 11399000 11021000 14450000 3 3 0 3 3 3 3 3 3 3 3 7595200000 5248400000 2346800000 2828 1365 2648 16276;16277;16278;16279;16280;16281;16282;16283 19532;19533;19534;19535;19536;19537;19538;19539;19540 19533 9 DIPGLTDTTVPRR Unmodified 1439.7732 0.77324153 1365 P62753 RPS6 40S ribosomal protein S6 yes yes 0 0 0 1 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 43.274 43.428 3 2.9821E-23 11972 20211116_3433_TMUAki_TMT10x_P_F5 215.02 190.56 4818900 8380300 129.95 9652900 7047800 6398200 4935700 6256200 5855500 5635100 6839700 4486500 7824500 392270 9709000 6702200 6715600 5145400 6349400 5951600 5529100 6567500 4 4 1 4 4 4 4 4 4 4 4 1559700 2635400 0 3308200 3999100 3771600 2241400 1948900 1883600 1939200 2082900 1452200 2461600 151420 3334400 3789500 3772700 2354300 2073200 1939000 1894300 2003100 1 1 0 1 1 1 1 1 1 1 1 3259100 5745000 129.95 6344600 3048700 2626600 2694400 4307300 3971900 3695900 4756800 3034400 5362900 240850 6374600 2912700 2942900 2791100 4276300 4012600 3634800 4564400 3 3 1 3 3 3 3 3 3 3 3 943900000 574470000 369430000 2829 1365 2649 16284;16285;16286;16287;16288 19541;19542;19543;19544;19545 19542 5 DIPLGIR Unmodified 782.46504 0.46503826 2264 Q8TAT6;Q8TAT6-2 NPLOC4 Nuclear protein localization protein 4 homolog yes no 0 0 0 0 By MS/MS 5 0 1 1 48.109 48.281 2 0.055022 12832 20211116_3444_TMUAki_TMT10x_S_F5 65.672 8.5697 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2830 2264 2650 16289 19546 19546 1 DIPNENEAQFQIR Unmodified 1572.7532 0.75323437 1557 Q10567;Q10567-3;Q10567-2;Q10567-4 AP1B1 AP-1 complex subunit beta-1 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 49.807 49.592 3 4.6093E-05 15875 20211116_3430_TMUAki_TMT10x_P_F3 97.276 81.736 3572600 6218600 139730 6962700 5538200 6094700 4340800 6489500 6110400 4656900 6024100 3327400 5805400 453940 7037600 5288600 6271200 4520400 6523300 6135800 4623600 5813900 2 2 2 2 2 2 2 2 2 2 2 1860600 2958200 63976 3194900 3686200 4473000 2810600 3149000 2970200 2160300 2936500 1732900 2761200 239450 3261700 3516400 4448200 2901600 3238900 3013500 2150600 2833800 1 1 1 1 1 1 1 1 1 1 1 1712000 3260400 75756 3767800 1851900 1621600 1530200 3340500 3140200 2496500 3087600 1594600 3044200 214500 3775800 1772200 1823000 1618800 3284400 3122300 2473000 2980100 1 1 1 1 1 1 1 1 1 1 1 267420000 144870000 122560000 2831 1557 2651 16290;16291;16292 19547;19548;19549 19548 3 DIPNENELQFQIK Unmodified 1586.794 0.79403655 1391 P63010;P63010-2;P63010-3 AP2B1 AP-2 complex subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 4 0.894 2 1 2 3 2 65.279 65.184 3 2.0188E-06 20610 20211116_3431_TMUAki_TMT10x_P_F4 111.79 94.854 8273200 12238000 254570 12751000 8620600 14674000 9426500 7932800 7609000 8105900 9139000 7705100 11422000 928020 13001000 8301500 14679000 9463300 8410900 7874600 7909500 8768700 2 2 2 2 2 2 2 2 2 2 2 8273200 12238000 254570 12751000 8620600 14674000 9426500 7932800 7609000 8105900 9139000 7705100 11422000 928020 13001000 8301500 14679000 9463300 8410900 7874600 7909500 8768700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 894340000 894340000 0 2832 1391 2652 16293;16294;16295;16296;16297 19550;19551;19552;19553;19554 19551 5 DIPSLPPLPPLPPLPPLDR Unmodified 2043.1768 0.17684874 1116 P49750;P49750-3;P49750-1 YLPM1 YLP motif-containing protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 81.248 81.249 3 2.3181E-12 26876 20211116_3436_TMUAki_TMT10x_P_F8 128.1 99.926 4572200 7528500 73068 7687900 4694000 7181200 5074000 4085100 3985200 4531300 5773500 4257400 7025400 419980 7824100 4513000 7277400 5093200 4323000 4165400 4407100 5514200 5 5 2 5 5 5 5 5 5 5 5 3121000 4880900 57244 5247700 2727300 5327900 3028000 2696700 2630100 3033400 3827000 2906200 4555800 282460 5328800 2624500 5363600 3043400 2884700 2735600 2948700 3654700 3 3 1 3 3 3 3 3 3 3 3 1451100 2647600 15824 2440200 1966800 1853300 2046100 1388400 1355100 1497900 1946600 1351200 2469700 137520 2495200 1888500 1913800 2049900 1438300 1429800 1458400 1859500 2 2 1 2 2 2 2 2 2 2 2 1385800000 1017200000 368520000 2833 1116 2653 16298;16299;16300;16301 19555;19556;19557;19558;19559;19560 19556 6 DIPVLVATDVAAR Unmodified 1338.7507 0.75071518 2125 Q86XP3;Q86XP3-2 DDX42 ATP-dependent RNA helicase DDX42 yes no 0 0 0 0 By MS/MS By MS/MS 4.25 0.829 1 1 2 1 3 65.82 65.654 2 2.9681E-14 21292 20211116_3442_TMUAki_TMT10x_S_F4 163.12 120.25 3086400 6040000 43743 6422800 4140800 3416100 3608600 3827000 3427200 3775700 4272900 2874100 5637400 311420 6480300 3959700 3674700 3682600 3868800 3524600 3689700 4095700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3086400 6040000 43743 6422800 4140800 3416100 3608600 3827000 3427200 3775700 4272900 2874100 5637400 311420 6480300 3959700 3674700 3682600 3868800 3524600 3689700 4095700 1 1 1 1 1 1 1 1 1 1 1 436970000 0 436970000 2834 2125 2654 16302;16303;16304;16305 19561;19562;19563;19564 19562 4 DIPVVHQLLTR Unmodified 1289.7456 0.74557022 872 P30419;P30419-2 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 55.008 55.338 3 6.6881E-10 17980 20211116_3446_TMUAki_TMT10x_S_F7 159.99 124.7 3875800 6757400 27587 6386500 5513700 6452900 4715100 5489200 5353700 5300700 5505700 3608700 6304000 333070 6542500 5265900 6548100 4844200 5624000 5423900 5184700 5306400 4 4 2 4 4 4 4 4 4 4 4 1915900 2985000 5182.6 3030400 3242300 4236200 2655500 2678100 2656200 2564700 2587000 1783700 2785500 161510 3106300 3093100 4206200 2724300 2798200 2699700 2509500 2497700 2 2 1 2 2 2 2 2 2 2 2 1960000 3772400 22404 3356100 2271400 2216800 2059500 2811100 2697500 2736000 2918700 1825000 3518500 171570 3436100 2172900 2341900 2119900 2825900 2724200 2675200 2808700 2 2 1 2 2 2 2 2 2 2 2 2326000000 1226300000 1099700000 2835 872 2655 16306;16307;16308;16309 19565;19566;19567;19568 19567 4 DIQDSLTVSNEVQTAK Unmodified 1746.8636 0.86357268 1062 P47755 CAPZA2 F-actin-capping protein subunit alpha-2 yes yes 0 0 0 0 By MS/MS 4 0 1 1 55.446 55.598 3 1.2988E-07 16662 20211116_3431_TMUAki_TMT10x_P_F4 111.78 100.08 8262900 10823000 34096 14646000 16885000 14373000 9610400 6025200 7820500 6523900 9159300 7693300 10114000 763860 14667000 16004000 14471000 10073000 6562200 8081800 6351000 8794200 2 2 1 2 2 2 2 2 2 2 2 8262900 10823000 34096 14646000 16885000 14373000 9610400 6025200 7820500 6523900 9159300 7693300 10114000 763860 14667000 16004000 14471000 10073000 6562200 8081800 6351000 8794200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 605230000 605230000 0 2836 1062 2656 16310 19569;19570 19569 2 DIQEESTFSSR Unmodified 1297.5786 0.57862405 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 3 1 2 36.338 36.325 2 1.1694E-16 8306 20211116_3440_TMUAki_TMT10x_S_F2 217.14 170.32 937900 1460400 0 2017300 1838300 1274900 967990 762430 926870 676470 1195000 873150 1364800 74234 2007600 1739700 1333100 1026100 798480 954250 664220 1144500 4 4 0 4 4 4 4 4 4 4 4 555640 826700 0 1211400 1457700 990870 608220 509200 628640 423290 731750 517300 772830 51712 1205400 1375900 1012200 661990 539460 642300 416950 702700 1 1 0 1 1 1 1 1 1 1 1 382260 633690 0 805910 380590 284010 359780 253230 298230 253180 463290 355850 591950 22522 802190 363810 320830 364120 259020 311950 247270 441810 3 3 0 3 3 3 3 3 3 3 3 55228000 39824000 15405000 2837 1018 2657 16311;16312;16313 19571;19572;19573;19574 19573 4 DIQQHKEEAWVIGSVVAR Unmodified 2064.0752 0.075237214 766 P22102 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes yes 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 55.016 55.37 4 1.1325E-05 17469 20211116_3435_TMUAki_TMT10x_P_F7 86.539 69.66 27968000 46096000 614680 45058000 38692000 48933000 33643000 31213000 29624000 30615000 35402000 26045000 43009000 3041300 46098000 37010000 49212000 34265000 32611000 30518000 29925000 33972000 6 6 5 6 6 6 6 6 6 6 6 18357000 29789000 551320 29818000 29114000 39900000 23795000 19545000 18758000 19698000 22612000 17097000 27797000 2185900 30568000 27815000 39568000 24258000 20904000 19440000 19232000 21694000 4 4 3 4 4 4 4 4 4 4 4 9610600 16307000 63357 15240000 9578100 9032600 9847800 11668000 10866000 10917000 12790000 8948800 15212000 855370 15530000 9194600 9643900 10007000 11708000 11078000 10693000 12278000 2 2 2 2 2 2 2 2 2 2 2 2873400000 1689900000 1183400000 2838 766 2658 16314;16315;16316;16317 19575;19576;19577;19578 19578 4 DIQTNVYIK Unmodified 1092.5815 0.58152458 1076 P48556 PSMD8 26S proteasome non-ATPase regulatory subunit 8 yes yes 0 0 0 0 By MS/MS 5 0 1 1 49.728 49.919 2 8.9191E-05 14608 20211116_3433_TMUAki_TMT10x_P_F5 103.88 56.03 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2839 1076 2659 16318 19579 19579 1 DIQYPFLGPVPTR Unmodified 1501.7929 0.79291434 1745 Q14CX7;Q14CX7-2 NAA25 N-alpha-acetyltransferase 25, NatB auxiliary subunit yes no 0 0 0 0 By MS/MS 8 0 1 1 69.752 69.833 3 0.06882 22216 20211116_3436_TMUAki_TMT10x_P_F8 40.242 23.216 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2840 1745 2660 16319 19580 19580 1 DIRPGAAFEPTYIYR Unmodified 1767.8944 0.8944193 1729 Q14694;Q14694-3;Q14694-2 USP10 Ubiquitin carboxyl-terminal hydrolase 10 yes no 0 0 0 1 By MS/MS By MS/MS 7.17 0.687 1 3 2 2 4 53.916 54.19 3 3.6825E-24 15289 20211116_3447_TMUAki_TMT10x_S_F8 193.32 141.45 44310000 72280000 214400 78053000 56535000 53410000 47679000 39649000 37572000 37269000 53153000 41257000 67466000 3776600 78851000 53981000 55622000 48513000 40936000 39218000 36497000 50793000 6 6 2 6 6 6 6 6 6 6 6 21991000 34579000 148740 37925000 33682000 35993000 27630000 18870000 18005000 18463000 25335000 20475000 32279000 1987500 38425000 32144000 36401000 28045000 20038000 18998000 18049000 24213000 3 3 1 3 3 3 3 3 3 3 3 22320000 37700000 65665 40128000 22853000 17418000 20049000 20779000 19567000 18806000 27818000 20781000 35187000 1789100 40426000 21837000 19220000 20468000 20898000 20220000 18448000 26580000 3 3 1 3 3 3 3 3 3 3 3 4820600000 2490600000 2330000000 2841 1729 2661 16320;16321;16322;16323;16324;16325 19581;19582;19583;19584;19585;19586;19587 19587 7 DIRPVCR Unmodified 914.47562 0.47561972 63 O00148;O00148-2;O00148-3 DDX39A ATP-dependent RNA helicase DDX39A yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 27.013 27.004 3 0.021333 5687 20211116_3433_TMUAki_TMT10x_P_F5 74.423 49.749 304760 445720 7148.6 401360 343740 457630 339950 192100 217700 255700 305110 283810 415730 32475 413430 329930 456760 341240 210620 229920 247110 291620 2 2 2 2 2 2 2 2 2 2 2 304760 445720 7148.6 401360 343740 457630 339950 192100 217700 255700 305110 283810 415730 32475 413430 329930 456760 341240 210620 229920 247110 291620 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18356000 18356000 0 2842 63 2662 16326;16327 19588;19589 19589 2 DISAPKPGPLK Unmodified 1121.6445 0.64445919 1672 Q14008;Q14008-2;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 1 By MS/MS 8 0 1 1 42.532 42.596 3 0.049997 10574 20211116_3447_TMUAki_TMT10x_S_F8 51.567 36.893 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2843 1672 2663 16328 19590 19590 1 DISEASVFDAYVLPK Unmodified 1652.8298 0.82975336 1373 P62854 RPS26 40S ribosomal protein S26 yes yes 0 0 0 0 By MS/MS By MS/MS 6.11 1.48 1 5 6 10 15 27 11 42 33 50.778 50.831 2;3 8.6137E-34 26216 20211116_3433_TMUAki_TMT10x_P_F5 234.39 200.43 219550000 375260000 1460600 356540000 253640000 297790000 256320000 188820000 165510000 208440000 259830000 204420000 350090000 18363000 364170000 243250000 304540000 257040000 198070000 175700000 202760000 247730000 57 57 26 57 57 57 57 57 57 57 57 108260000 177680000 733840 173780000 107930000 194110000 124160000 91752000 81241000 104400000 124200000 100800000 165780000 8831900 177860000 103890000 194190000 123760000 98832000 86052000 101440000 118480000 32 32 19 32 32 32 32 32 32 32 32 111290000 197580000 726800 182760000 145700000 103680000 132160000 97073000 84268000 104040000 135620000 103620000 184300000 9530800 186310000 139360000 110350000 133280000 99239000 89646000 101320000 129240000 25 25 7 25 25 25 25 25 25 25 25 54006000000 26707000000 27299000000 2844 1373 2664 16329;16330;16331;16332;16333;16334;16335;16336;16337;16338;16339;16340;16341;16342;16343;16344;16345;16346;16347;16348;16349;16350;16351;16352;16353;16354;16355;16356;16357;16358;16359;16360;16361;16362;16363;16364;16365;16366;16367;16368;16369;16370;16371;16372;16373;16374;16375;16376;16377;16378;16379;16380;16381;16382;16383;16384;16385;16386;16387;16388;16389;16390;16391;16392;16393;16394;16395;16396;16397;16398;16399;16400;16401;16402;16403 19591;19592;19593;19594;19595;19596;19597;19598;19599;19600;19601;19602;19603;19604;19605;19606;19607;19608;19609;19610;19611;19612;19613;19614;19615;19616;19617;19618;19619;19620;19621;19622;19623;19624;19625;19626;19627;19628;19629;19630;19631;19632;19633;19634;19635;19636;19637;19638;19639;19640;19641;19642;19643;19644;19645;19646;19647;19648;19649;19650;19651;19652;19653;19654;19655;19656;19657;19658;19659;19660;19661;19662;19663;19664;19665;19666;19667;19668;19669;19670;19671 19599 81 DISENKR Unmodified 860.43519 0.4351947 615 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 27.35 27.09 3 0.0069672 7994 20211116_3441_TMUAki_TMT10x_S_F3 96.19 15.728 571450 950720 5780.1 715250 711350 971280 743590 542470 444690 470110 659740 532120 886240 54723 750130 683240 964050 743320 571020 473110 462120 629770 2 2 2 2 2 2 2 2 2 2 2 166250 290300 1596.3 232060 156650 281810 160980 172080 124420 141650 186390 154810 270660 15137 241600 150410 281560 161930 179590 130380 139590 177890 1 1 1 1 1 1 1 1 1 1 1 405200 660420 4183.8 483180 554700 689470 582610 370390 320270 328470 473350 377310 615580 39587 508530 532830 682490 581380 391430 342730 322520 451880 1 1 1 1 1 1 1 1 1 1 1 18270000 4541000 13729000 2845 615 2665 16404;16405 19672;19673 19673 2 DISIDVERR Unmodified 1101.5778 0.57783619 2249 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 36.543 36.296 3 0.00015029 11548 20211116_3441_TMUAki_TMT10x_S_F3 131.52 71.119 481280 749440 0 755680 489300 422720 502050 440810 448890 450790 610130 448100 699330 37210 765500 469300 451580 506940 447570 464710 439860 583580 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 481280 749440 0 755680 489300 422720 502050 440810 448890 450790 610130 448100 699330 37210 765500 469300 451580 506940 447570 464710 439860 583580 1 1 0 1 1 1 1 1 1 1 1 23533000 0 23533000 2846 2249 2666 16406;16407 19674;19675 19675 2 DISLSDYK Unmodified 939.45493 0.45492709 1533 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 52.645 52.741 2 0.0011381 15468 20211116_3431_TMUAki_TMT10x_P_F4 127.46 50.404 48050000 71004000 215870 105420000 161230000 88313000 59039000 55320000 62911000 48233000 78032000 44734000 66383000 4923700 104860000 151980000 90281000 65349000 57698000 64368000 47398000 74806000 6 6 1 6 6 6 6 6 6 6 6 31155000 44743000 0 65241000 145400000 73898000 43124000 34936000 39945000 30176000 47930000 29002000 41826000 3386500 65238000 136790000 73873000 48992000 37344000 41059000 29668000 45989000 4 4 0 4 4 4 4 4 4 4 4 16895000 26262000 215870 40184000 15829000 14415000 15915000 20384000 22966000 18057000 30102000 15732000 24557000 1537100 39625000 15190000 16409000 16357000 20354000 23309000 17731000 28817000 2 2 1 2 2 2 2 2 2 2 2 3251500000 2043200000 1208400000 2847 1533 2667 16408;16409;16410;16411;16412 19676;19677;19678;19679;19680;19681 19678 6 DISPVLKDPASFR Unmodified 1443.7722 0.7721789 541 P07741;P07741-2 APRT Adenine phosphoribosyltransferase yes no 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 53.847 54.462 3 5.2604E-06 17643 20211116_3446_TMUAki_TMT10x_S_F7 103.66 76.687 23922000 41342000 322200 45435000 31214000 39948000 28284000 30148000 33825000 30852000 32598000 22276000 38592000 2385700 45980000 29875000 40814000 29014000 31168000 34125000 30103000 31484000 4 4 4 4 4 4 4 4 4 4 4 10673000 17747000 214070 20094000 21538000 27331000 16717000 14390000 15858000 14399000 14429000 9939600 16568000 1236600 20441000 20544000 27106000 17183000 15284000 16119000 14063000 13964000 2 2 2 2 2 2 2 2 2 2 2 13248000 23596000 108140 25342000 9675900 12617000 11566000 15758000 17967000 16453000 18169000 12336000 22024000 1149100 25539000 9331800 13709000 11832000 15884000 18006000 16040000 17521000 2 2 2 2 2 2 2 2 2 2 2 809380000 364870000 444500000 2848 541 2668 16413;16414;16415 19682;19683;19684;19685;19686 19685 5 DISSIGLK Unmodified 831.47018 0.47018322 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 52.075 52.207 2 0.0026237 14737 20211116_3445_TMUAki_TMT10x_S_F6 107.29 40.613 7835800 13421000 41537 14082000 8321100 8066000 8335600 12814000 11909000 11149000 12620000 7296200 12526000 689050 14229000 7981200 8694800 8565100 12739000 11984000 10957000 12152000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7835800 13421000 41537 14082000 8321100 8066000 8335600 12814000 11909000 11149000 12620000 7296200 12526000 689050 14229000 7981200 8694800 8565100 12739000 11984000 10957000 12152000 2 2 1 2 2 2 2 2 2 2 2 58526000 0 58526000 2849 2116 2669 16416;16417 19687;19688;19689 19689 3 DISSSLNSLADSNAR Unmodified 1548.738 0.73797824 384 O94776 MTA2 Metastasis-associated protein MTA2 yes yes 0 0 0 0 By matching By MS/MS 4.25 0.433 3 1 1 3 53.027 53.114 2;3 2.3124E-33 16142 20211116_3442_TMUAki_TMT10x_S_F4 228.02 183.71 3648200 6585000 64967 7534700 3477700 3197900 3209300 5062300 5026200 4535100 5432500 3397300 6148000 360620 7554700 3331700 3567200 3325600 5037200 5048200 4450900 5227900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3648200 6585000 64967 7534700 3477700 3197900 3209300 5062300 5026200 4535100 5432500 3397300 6148000 360620 7554700 3331700 3567200 3325600 5037200 5048200 4450900 5227900 2 2 2 2 2 2 2 2 2 2 2 563880000 175640000 388240000 2850 384 2670 16418;16419;16420;16421 19690;19691;19692 19691 3 DISSSLNSLADSNAREFEEESKQPGVSEQQR Unmodified 3436.5979 0.59786253 384 O94776 MTA2 Metastasis-associated protein MTA2 yes yes 0 0 0 2 By MS/MS 3 0 1 1 61.405 60.978 4 9.944E-15 21651 20211116_3441_TMUAki_TMT10x_S_F3 104.05 93.173 2030300 3621700 15926 3459500 3753200 2006100 2081700 2554700 2413300 2146100 2617600 1890500 3378800 207300 3519000 3557700 2145600 2209300 2557500 2447900 2112800 2518800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2030300 3621700 15926 3459500 3753200 2006100 2081700 2554700 2413300 2146100 2617600 1890500 3378800 207300 3519000 3557700 2145600 2209300 2557500 2447900 2112800 2518800 1 1 1 1 1 1 1 1 1 1 1 492730000 0 492730000 2851 384 2671 16422 19693 19693 1 DISTNYYASQKK Unmodified 1416.6885 0.68850885 672 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 1 By MS/MS By matching 7.67 0.471 1 2 2 1 38.463 38.808 3 1.4995E-07 10707 20211116_3435_TMUAki_TMT10x_P_F7 134.24 101.97 706780 1188500 7151.1 1067900 1845100 1508200 913540 866500 981480 797880 992080 658140 1108500 81204 1104500 1746200 1494800 977450 911320 995890 782080 956700 2 2 2 2 2 2 2 2 2 2 2 706780 1188500 7151.1 1067900 1845100 1508200 913540 866500 981480 797880 992080 658140 1108500 81204 1104500 1746200 1494800 977450 911320 995890 782080 956700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 85026000 66209000 18817000 2852 672 2672 16423;16424;16425 19694;19695 19694 2 DISTTLNADEAVAR Unmodified 1474.7264 0.72635092 2345;442 Q92598;Q92598-2;Q92598-3;Q92598-4;O95757 HSPH1;HSPA4L Heat shock protein 105 kDa;Heat shock 70 kDa protein 4L no no 0 0 0 0 By MS/MS By MS/MS 2.62 1 2 4 4 3 6 7 48.301 48.203 2;3 1.5083E-71 13535 20211116_3440_TMUAki_TMT10x_S_F2 318.57 207.4 50135000 80282000 564260 101980000 76488000 79076000 49701000 73998000 81543000 66947000 75009000 46681000 74993000 4597600 102160000 72672000 81856000 52800000 75281000 81331000 65675000 72561000 19 19 6 19 19 19 19 19 19 19 19 22418000 35679000 149670 42989000 54582000 57248000 30702000 30998000 34028000 27744000 31591000 20873000 33319000 2265700 43553000 51732000 56851000 32494000 32744000 34386000 27230000 30550000 10 10 3 10 10 10 10 10 10 10 10 27716000 44604000 414590 58986000 21906000 21827000 18999000 43000000 47515000 39203000 43419000 25808000 41674000 2331800 58604000 20939000 25004000 20306000 42537000 46945000 38445000 42011000 9 9 3 9 9 9 9 9 9 9 9 5569800000 3067100000 2502700000 2853 2345;442 2673 16426;16427;16428;16429;16430;16431;16432;16433;16434;16435;16436;16437;16438 19696;19697;19698;19699;19700;19701;19702;19703;19704;19705;19706;19707;19708;19709;19710;19711;19712;19713;19714;19715;19716 19708 21 DITAEFLVK Unmodified 1034.5648 0.56481189 265 O60341;O60341-2 KDM1A Lysine-specific histone demethylase 1A yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 68.423 68.487 2 0.0001829 21998 20211116_3431_TMUAki_TMT10x_P_F4 135.79 70.955 17474000 29424000 463310 27952000 20106000 28257000 20580000 18076000 16621000 18716000 23039000 16273000 27450000 1917400 28624000 19319000 28538000 20728000 18911000 17310000 18253000 22026000 3 3 3 3 3 3 3 3 3 3 3 11385000 18243000 190010 17253000 12727000 20796000 13210000 11910000 10739000 12059000 14398000 10602000 17019000 1139700 17723000 12227000 20768000 13297000 12562000 11163000 11771000 13776000 2 2 2 2 2 2 2 2 2 2 2 6089400 11181000 273300 10699000 7378800 7460300 7370200 6166000 5881800 6657400 8641400 5671900 10431000 777620 10901000 7091500 7770800 7430300 6349200 6146800 6481700 8250600 1 1 1 1 1 1 1 1 1 1 1 960260000 575700000 384560000 2854 265 2674 16439;16440;16441 19717;19718;19719 19717 3 DITIHANPFAQ Unmodified 1225.6091 0.60913632 2790 Q9H2H8;Q9H2H8-2 PPIL3 Peptidyl-prolyl cis-trans isomerase-like 3 yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 57.665 57.827 2 0.00048311 18067 20211116_3442_TMUAki_TMT10x_S_F4 86.136 73.509 7962600 12729000 56489 13662000 10422000 12038000 8519800 9635300 9704600 8520300 9989700 7414400 11881000 747250 13847000 9949200 12310000 8778200 9884400 9831000 8367300 9627800 2 2 2 2 2 2 2 2 2 2 2 4444700 6733400 15492 7423200 6770200 8888200 5596800 5073600 5121800 4560400 5399000 4138600 6285600 415510 7546100 6463000 8878700 5723700 5335700 5241200 4475000 5199700 1 1 1 1 1 1 1 1 1 1 1 3517900 5995900 40997 6238800 3652300 3150000 2923000 4561700 4582700 3959900 4590600 3275800 5595700 331750 6301300 3486200 3431300 3054500 4548700 4589800 3892200 4428200 1 1 1 1 1 1 1 1 1 1 1 600120000 265630000 334500000 2855 2790 2675 16442;16443;16444 19720;19721;19722 19721 3 DITLEASR Unmodified 903.46616 0.46616048 1397 P63151;P63151-2 PPP2R2A Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform yes no 0 0 0 0 By MS/MS 4 0 1 1 35.771 35.878 2 0.017852 9184 20211116_3442_TMUAki_TMT10x_S_F4 74.486 43.925 185210 292180 0 313240 180170 176380 196210 179150 182030 166440 238350 172440 272720 14651 316030 173120 188190 197750 181630 187800 163070 228180 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 185210 292180 0 313240 180170 176380 196210 179150 182030 166440 238350 172440 272720 14651 316030 173120 188190 197750 181630 187800 163070 228180 1 1 0 1 1 1 1 1 1 1 1 2438300 0 2438300 2856 1397 2676 16445 19723 19723 1 DITLFHAMDTLQR Oxidation (M) 1575.7715 0.77152697 384 O94776;O94776-2 MTA2 Metastasis-associated protein MTA2 yes no 0 0 1 0 By MS/MS By MS/MS 4.8 0.748 2 2 1 3 2 51.044 51.207 3 1.6038E-09 13942 20211116_3444_TMUAki_TMT10x_S_F5 133.15 108.36 8942100 15460000 76810 16705000 12527000 14727000 10208000 14346000 14518000 12328000 13725000 8326200 14430000 821800 16924000 11955000 15116000 10609000 14545000 14553000 12123000 13265000 5 5 3 5 5 5 5 5 5 5 5 3489400 6095400 36115 6557400 6794400 9537700 5045000 5689700 5781200 4654700 5446200 3249200 5689400 369240 6701600 6473000 9446000 5231600 5948100 5837300 4588700 5264100 2 2 2 2 2 2 2 2 2 2 2 5452700 9364400 40695 10148000 5732800 5189500 5162700 8656600 8737000 7673100 8279000 5077000 8740900 452560 10223000 5482300 5670400 5377300 8597000 8715800 7534500 8000600 3 3 1 3 3 3 3 3 3 3 3 1843300000 1086000000 757200000 2857 384 2677 16446;16447;16448;16449;16450 19724;19725;19726;19727;19728;19729 19728 296 6 DITLFHAMDTLQR Unmodified 1559.7766 0.77661235 384 O94776;O94776-2 MTA2 Metastasis-associated protein MTA2 yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 63.583 63.794 3 2.8577E-19 19515 20211116_3445_TMUAki_TMT10x_S_F6 184.96 160.71 4394300 7641800 193490 7658500 5395400 4459600 4960900 5085200 4460700 4558800 6032400 4093000 7130700 558670 7763900 5174100 4754600 5039300 5122900 4615600 4474000 5770600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4394300 7641800 193490 7658500 5395400 4459600 4960900 5085200 4460700 4558800 6032400 4093000 7130700 558670 7763900 5174100 4754600 5039300 5122900 4615600 4474000 5770600 2 2 2 2 2 2 2 2 2 2 2 932260000 0 932260000 2858 384 2677 16451;16452;16453 19730;19731;19732 19731 3 DITLTNDKPATAIGVIGNFTDAER Unmodified 2531.2867 0.28674613 906 P33176 KIF5B Kinesin-1 heavy chain yes yes 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 74.299 74.397 3 3.0763E-29 23916 20211116_3445_TMUAki_TMT10x_S_F6 168.65 155.48 9065200 14835000 202680 15551000 8665100 9952500 10168000 5064400 5522800 6146000 9246200 8442100 13846000 934850 15731000 8358600 10374000 10092000 5428200 5953900 5958000 8804300 3 3 3 3 3 3 3 3 3 3 3 3088900 4380000 63381 4911700 2419100 4001600 2858500 1953000 1780700 2202000 2938400 2876600 4089000 305780 4959600 2334400 4086700 2843200 2096500 1899800 2140300 2798700 1 1 1 1 1 1 1 1 1 1 1 5976200 10455000 139300 10640000 6246100 5950900 7309700 3111400 3742100 3944000 6307800 5565500 9756700 629070 10771000 6024200 6287800 7248500 3331700 4054100 3817600 6005500 2 2 2 2 2 2 2 2 2 2 2 1751900000 642810000 1109000000 2859 906 2678 16454;16455;16456 19733;19734;19735 19735 3 DITSSIHFEAYR Unmodified 1437.6888 0.6888432 3118 Q9UHD8-5;Q9UHD8;Q9UHD8-2;Q9UHD8-7;Q9UHD8-3;Q9UHD8-4;Q9UHD8-9;Q9UHD8-8 SEPT9 Septin-9 yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.943 1 2 2 1 49.794 50.214 3 6.2626E-08 15929 20211116_3446_TMUAki_TMT10x_S_F7 110.8 66.434 2664800 4130300 0 4330800 4559100 5977200 3401000 3275400 3149900 2808600 3330800 2480800 3854800 189420 4428600 4338600 5926900 3502500 3452600 3221900 2762300 3207500 2 2 0 2 2 2 2 2 2 2 2 2664800 4130300 0 4330800 4559100 5977200 3401000 3275400 3149900 2808600 3330800 2480800 3854800 189420 4428600 4338600 5926900 3502500 3452600 3221900 2762300 3207500 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 630420000 630420000 0 2860 3118 2679 16457;16458;16459 19736;19737;19738 19738 3 DIVALMVR Unmodified 915.52117 0.52117293 625 P11388;P11388-2;P11388-3;P11388-4 TOP2A DNA topoisomerase 2-alpha yes no 0 0 0 0 By MS/MS 8 0 1 1 63.784 63.778 2 0.053231 19175 20211116_3447_TMUAki_TMT10x_S_F8 63.48 35.955 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2861 625 2680 16460 19739 19739 1 DIVENICGR Unmodified 1074.5128 0.51279309 1006 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 42.229 42.444 2 1.7875E-05 12716 20211116_3430_TMUAki_TMT10x_P_F3 148.27 89.589 1487500 2844700 49891 3521300 1453800 1285800 1199800 1924700 2276400 1836200 2608000 1385400 2656900 169350 3511100 1390600 1462100 1263600 1922000 2280500 1797000 2505600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1487500 2844700 49891 3521300 1453800 1285800 1199800 1924700 2276400 1836200 2608000 1385400 2656900 169350 3511100 1390600 1462100 1263600 1922000 2280500 1797000 2505600 1 1 1 1 1 1 1 1 1 1 1 93343000 0 93343000 2862 1006 2681 16461;16462;16463 19740;19741;19742 19740 3 DIVENYFMR Oxidation (M) 1201.5438 0.54375887 1615 Q13263 TRIM28 Transcription intermediary factor 1-beta yes yes 0 0 1 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 56.558 56.604 2 0.027663 18757 20211116_3430_TMUAki_TMT10x_P_F3 62.2 48.205 33414000 52089000 215350 48671000 43611000 58262000 35845000 50976000 50339000 47825000 49647000 31112000 48592000 2945500 50037000 41623000 58598000 37214000 52102000 50552000 46838000 47914000 7 7 4 7 7 7 7 7 7 7 7 23451000 34666000 164930 32903000 31739000 47689000 26665000 33988000 33860000 32672000 34753000 21836000 32341000 2074100 33912000 30306000 47363000 27535000 35209000 34163000 31963000 33497000 5 5 3 5 5 5 5 5 5 5 5 9962900 17423000 50424 15768000 11873000 10573000 9180900 16988000 16479000 15153000 14893000 9276600 16251000 871350 16125000 11318000 11236000 9679300 16894000 16389000 14874000 14416000 2 2 1 2 2 2 2 2 2 2 2 4504200000 2693800000 1810400000 2863 1615 2682 16464;16465;16466;16467;16468 19743;19744;19745;19746;19747;19748;19749 19744 2162 7 DIVENYFMR Unmodified 1185.5488 0.54884425 1615 Q13263 TRIM28 Transcription intermediary factor 1-beta yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.957 1 2 2 1 4 2 63.952 63.915 2 0.0011083 20097 20211116_3431_TMUAki_TMT10x_P_F4 102.62 72.367 31877000 51835000 114610 52505000 37743000 48974000 35223000 25630000 24120000 28865000 36594000 29680000 48370000 2684800 53464000 36124000 49584000 35516000 27334000 25466000 28058000 34915000 4 4 1 4 4 4 4 4 4 4 4 24416000 39552000 114610 39614000 29204000 42428000 27669000 19942000 18890000 22757000 27838000 22734000 36906000 2104900 40450000 27964000 42544000 27874000 21494000 19919000 22109000 26577000 3 3 1 3 3 3 3 3 3 3 3 7460600 12283000 0 12892000 8539200 6545800 7553900 5688100 5229600 6108300 8755800 6946100 11464000 579920 13014000 8159500 7040600 7641900 5839100 5547100 5948400 8337200 1 1 0 1 1 1 1 1 1 1 1 1913300000 1518200000 395130000 2864 1615 2682 16469;16470;16471;16472;16473;16474 19750;19751;19752;19753;19754 19750 5 DIVHSGLAYTMER Oxidation (M) 1506.7137 0.71367774 463 P00367;P00367-3;P00367-2 GLUD1 Glutamate dehydrogenase 1, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 41.065 41.197 3 0.00070414 10965 20211116_3431_TMUAki_TMT10x_P_F4 68.972 53.77 4111500 6551400 85139 7694900 6096300 7003200 4806100 5324200 6070000 5288800 6348800 3828400 6117400 307140 7759000 5814500 7139300 4981600 5496900 6129800 5166800 6115800 4 4 2 4 4 4 4 4 4 4 4 2155600 3487100 48833 4018900 4408100 5485500 2978200 2900900 3421900 3040600 3326900 2007000 3255800 199530 4084300 4190000 5439700 3109400 3084000 3458400 2963800 3212300 2 2 1 2 2 2 2 2 2 2 2 1955900 3064300 36306 3676100 1688200 1517700 1827900 2423300 2648100 2248200 3021900 1821400 2861600 107620 3674700 1624500 1699600 1872200 2412900 2671400 2202900 2903500 2 2 1 2 2 2 2 2 2 2 2 1055800000 538030000 517810000 2865 463 2683 16475;16476;16477;16478 19755;19756;19757;19758;19759;19760 19755 344 6 DIVHSGLAYTMER Unmodified 1490.7188 0.71876312 463 P00367;P00367-3;P00367-2 GLUD1 Glutamate dehydrogenase 1, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 48.026 48.193 3 1.4364E-09 13910 20211116_3433_TMUAki_TMT10x_P_F5 134.04 118.5 4837000 7505100 65883 8656900 6018600 5938200 4844300 5802600 5291600 5056400 6224200 4504200 7007400 478970 8709400 5745300 6214100 4989000 5884200 5396800 4969100 5975400 3 3 3 3 3 3 3 3 3 3 3 1603100 2419800 36660 2934000 3033300 3042600 2026800 1751800 1710400 1502900 1971800 1492900 2259900 187100 2958500 2885400 3063900 2098700 1838800 1763200 1478100 1894000 1 1 1 1 1 1 1 1 1 1 1 3233900 5085300 29223 5722900 2985200 2895600 2817500 4050800 3581200 3553500 4252400 3011300 4747500 291860 5750900 2859900 3150200 2890300 4045400 3633600 3491000 4081400 2 2 2 2 2 2 2 2 2 2 2 850580000 329680000 520910000 2866 463 2683 16479;16480;16481 19761;19762;19763 19761 3 DIVNGLR Unmodified 785.43955 0.43955179 1063 P47756-2;P47756 CAPZB F-actin-capping protein subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 37.397 37.48 2 0.035899 9993 20211116_3442_TMUAki_TMT10x_S_F4 76.774 28.859 1030600 1588800 1751.9 1719000 1189000 1087900 1080000 943010 1055800 984350 1239700 959560 1483000 83492 1735000 1137000 1144000 1100500 967340 1081700 959660 1190200 2 2 1 2 2 2 2 2 2 2 2 278940 387470 1751.9 422750 423460 448690 248970 220580 275140 277540 315400 259730 361680 26783 429170 401750 450370 262480 237490 280190 268720 303010 1 1 1 1 1 1 1 1 1 1 1 751660 1201400 0 1296200 765530 639240 831050 722420 780640 706800 924340 699820 1121300 56709 1305900 735300 693610 837980 729840 801470 690940 887230 1 1 0 1 1 1 1 1 1 1 1 45082000 5680700 39402000 2867 1063 2684 16482;16483 19764;19765 19765 2 DIVPGDIVEIAVGDKVPADIR Unmodified 2190.1896 0.18959827 697 P16615;P16615-5;P16615-2;P16615-3 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 0 1 By MS/MS By MS/MS 4.33 1.11 2 1 2 1 3 3 78.466 78.443 3 9.2673E-05 28591 20211116_3441_TMUAki_TMT10x_S_F3 67.76 42.17 35796000 60735000 1029200 49302000 41802000 59488000 46765000 40271000 40962000 42424000 46048000 33337000 56629000 4011000 51256000 40269000 59542000 46997000 41979000 42106000 41345000 44263000 5 5 5 5 5 5 5 5 5 5 5 18802000 31129000 477200 24040000 17454000 36396000 22700000 20597000 20837000 21537000 23604000 17510000 29020000 1984700 25211000 16897000 35961000 22693000 21767000 21378000 20996000 22684000 2 2 2 2 2 2 2 2 2 2 2 16993000 29606000 551990 25262000 24348000 23092000 24066000 19674000 20125000 20887000 22443000 15827000 27609000 2026300 26046000 23372000 23582000 24304000 20212000 20729000 20349000 21579000 3 3 3 3 3 3 3 3 3 3 3 6349000000 3446000000 2903000000 2868 697 2685 16484;16485;16486;16487;16488;16489 19766;19767;19768;19769;19770 19768 5 DIVQFVPFR Unmodified 1119.6077 0.60767976 309;2130 O75131;Q96A23;Q9UBL6;Q8IYJ1;Q96FN4;Q9HCH3;Q9HCH3-2;Q96FN4-2;O95741;Q9UBL6-2;Q96A23-2;O95741-2;Q86YQ8;Q86YQ8-2 CPNE3;CPNE4;CPNE7;CPNE9;CPNE2;CPNE5;CPNE6;CPNE8 Copine-3;Copine-4;Copine-7;Copine-9;Copine-2;Copine-5;Copine-6;Copine-8 no no 0 0 0 0 By MS/MS By MS/MS 3.8 3.43 3 2 3 2 71.336 71.307 2 0.002956 22304 20211116_3447_TMUAki_TMT10x_S_F8 80.165 57.146 5972300 11151000 117050 9650700 6138700 11222000 8416400 7002300 7802700 8440700 8299000 5561700 10400000 606570 9974800 5950400 11240000 8399000 7375500 7982400 8184400 7990400 2 2 2 2 2 2 2 2 2 2 2 3339400 6360500 111330 5667100 3538900 7785500 5178600 4065400 4557500 5048900 4898500 3110200 5932400 383410 5862000 3441200 7717100 5147900 4350600 4675700 4890500 4714900 1 1 1 1 1 1 1 1 1 1 1 2632900 4791000 5721.7 3983600 2599700 3436100 3237800 2936900 3245200 3391800 3400500 2451500 4467500 223150 4112800 2509100 3523000 3251100 3024900 3306700 3293800 3275600 1 1 1 1 1 1 1 1 1 1 1 682150000 513950000 168200000 2869 309;2130 2686 16490;16491;16492;16493;16494 19771;19772;19773;19774 19774 4 DIVQFVPFRDYIDR Unmodified 1781.9101 0.91006937 2130 Q86YQ8;Q86YQ8-2 CPNE8 Copine-8 yes no 0 0 0 1 By MS/MS 7 0 1 1 75.424 75.58 3 0.00095354 25951 20211116_3435_TMUAki_TMT10x_P_F7 67.416 50.348 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2870 2130 2687 16495 19775 19775 1 DIVQFVPYR Unmodified 1135.6026 0.60259438 2608 Q99829 CPNE1 Copine-1 yes yes 0 0 0 0 By matching By MS/MS 7 0 2 1 1 60.935 61.538 2 0.083461 20539 20211116_3446_TMUAki_TMT10x_S_F7 48.794 18.076 7918400 12969000 0 13644000 9582800 9040000 8271600 12183000 13081000 11512000 11641000 7372000 12104000 580680 13802000 9149000 9563900 8607700 12208000 13047000 11271000 11274000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7918400 12969000 0 13644000 9582800 9040000 8271600 12183000 13081000 11512000 11641000 7372000 12104000 580680 13802000 9149000 9563900 8607700 12208000 13047000 11271000 11274000 1 1 0 1 1 1 1 1 1 1 1 530390000 300990000 229400000 2871 2608 2688 16496;16497 19776 19776 1 DIVQFVPYRR Unmodified 1291.7037 0.70370541 2608 Q99829 CPNE1 Copine-1 yes yes 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 50.05 49.787 3 0.00012937 15523 20211116_3429_TMUAki_TMT10x_P_F2 117.02 92.679 4678000 7994600 16798 9008600 9446200 10777000 6790300 7194000 6886500 6277600 6180800 4355700 7463600 451120 9145100 8990400 10790000 7029500 7467800 6976500 6168800 5984300 3 3 2 3 3 3 3 3 3 3 3 3997600 6732300 6833.3 7637000 8659300 10041000 6242100 5636400 5429000 4826500 4943500 3722100 6285400 383940 7763100 8241400 9981500 6432800 5928800 5541400 4747100 4783800 2 2 1 2 2 2 2 2 2 2 2 680380 1262300 9964.3 1371600 786870 736660 548160 1557600 1457500 1451100 1237400 633580 1178200 67186 1382000 749090 808070 596660 1539000 1435100 1421600 1200500 1 1 1 1 1 1 1 1 1 1 1 558660000 482310000 76352000 2872 2608 2689 16498;16499;16500;16501 19777;19778;19779;19780;19781 19779 5 DIVVQETMEDIDK Oxidation (M) 1549.7182 0.718154 252 O43852;O43852-3;O43852-4;O43852-2;O43852-10;O43852-6;O43852-15 CALU Calumenin yes no 0 0 1 0 By MS/MS 1 0 1 1 54.446 54.15 3 0.00049163 17725 20211116_3439_TMUAki_TMT10x_S_F1 79.337 64.647 1403900 2556900 36435 3022700 1268100 1227900 1275000 1651600 1737500 1470200 1947800 1307400 2387600 148440 3023900 1218300 1371100 1307300 1652400 1754800 1443400 1872400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1403900 2556900 36435 3022700 1268100 1227900 1275000 1651600 1737500 1470200 1947800 1307400 2387600 148440 3023900 1218300 1371100 1307300 1652400 1754800 1443400 1872400 1 1 1 1 1 1 1 1 1 1 1 167250000 0 167250000 2873 252 2690 16502 19782 19782 199 1 DIYQDLNR Unmodified 1035.4985 0.49852324 1027 P43246;P43246-2 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 42.027 41.901 2 0.0014042 12364 20211116_3429_TMUAki_TMT10x_P_F2 122.52 83.71 3798600 5439200 16321 8627300 10939000 9215100 4985200 5795400 6830000 4967100 5335800 3536800 5087300 407970 8584800 10338000 9274700 5425100 6040100 6814600 4885300 5193500 3 3 2 3 3 3 3 3 3 3 3 3197900 4298000 15384 7124900 10481000 8734500 4564600 4631300 5623100 4070600 4204900 2977500 4021100 359300 7093000 9900400 8706700 4972200 4899100 5623900 3998600 4100200 2 2 1 2 2 2 2 2 2 2 2 600700 1141200 937.44 1502400 457650 480590 420590 1164100 1206900 896540 1130900 559310 1066200 48672 1491900 437940 567980 452900 1141000 1190700 886630 1093300 1 1 1 1 1 1 1 1 1 1 1 225190000 151620000 73564000 2874 1027 2691 16503;16504;16505;16506 19783;19784;19785 19783 3 DKADFCIIHYAGK Unmodified 1536.7395 0.73949856 934;935 P35579;P35579-2;P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH9;MYH10 Myosin-9;Myosin-10 no no 0 0 0 1 By MS/MS By MS/MS 7 0.707 2 4 2 4 4 50.568 50.88 3;4 1.6674E-06 15636 20211116_3435_TMUAki_TMT10x_P_F7 116.84 94.965 41036000 65619000 344810 75820000 57973000 54247000 40648000 38266000 36327000 37231000 47244000 38210000 61268000 3785500 76306000 55161000 56235000 42003000 39682000 37533000 36405000 45237000 10 10 6 10 10 10 10 10 10 10 10 21116000 32964000 227380 37632000 39447000 40643000 24646000 19622000 18992000 18636000 23423000 19663000 30777000 2176600 38106000 37462000 40746000 25598000 20982000 19725000 18241000 22458000 5 5 3 5 5 5 5 5 5 5 5 19920000 32655000 117440 38188000 18526000 13604000 16002000 18644000 17336000 18596000 23821000 18547000 30491000 1608900 38200000 17699000 15488000 16405000 18700000 17808000 18164000 22779000 5 5 3 5 5 5 5 5 5 5 5 7387400000 4324800000 3062700000 2875 934;935 2692 16507;16508;16509;16510;16511;16512;16513;16514 19786;19787;19788;19789;19790;19791;19792;19793;19794;19795 19787 10 DKAPGQLECETAIAALNSCLR Unmodified 2316.1202 0.12021485 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 1 By matching By MS/MS 6.33 0.471 2 1 1 2 64.524 64.653 3 1.256E-19 21836 20211116_3446_TMUAki_TMT10x_S_F7 155.71 136.67 11298000 19251000 136480 17853000 11888000 13841000 14279000 11197000 10473000 12256000 14134000 10521000 17958000 1072100 18252000 11467000 14288000 14241000 11549000 10951000 11926000 13521000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11298000 19251000 136480 17853000 11888000 13841000 14279000 11197000 10473000 12256000 14134000 10521000 17958000 1072100 18252000 11467000 14288000 14241000 11549000 10951000 11926000 13521000 3 3 3 3 3 3 3 3 3 3 3 1625300000 323360000 1301900000 2876 3293 2693 16515;16516;16517 19796;19797;19798 19798 3 DKDDDGGEDDDANCNLICGDEYGPETR Unmodified 3044.152 0.15198108 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 1 By MS/MS By MS/MS 1.5 0.764 4 1 1 2 4 48.32 48.164 3;4 7.287E-52 13292 20211116_3428_TMUAki_TMT10x_P_F1 203.47 200.93 16086000 26262000 99845 42627000 25337000 29089000 15614000 29403000 31438000 23158000 26964000 14977000 24566000 1336000 42128000 24047000 30476000 16836000 29692000 31131000 22875000 26149000 11 11 3 11 11 11 11 11 11 11 11 6633400 10577000 0 17161000 22153000 25348000 13370000 13260000 13043000 10396000 11503000 6176000 9894100 633730 17164000 21017000 25047000 14011000 14007000 13229000 10272000 11144000 4 4 0 4 4 4 4 4 4 4 4 9452700 15685000 99845 25466000 3184400 3740700 2244200 16142000 18395000 12762000 15460000 8801400 14672000 702280 24964000 3030100 5429500 2825500 15685000 17902000 12603000 15005000 7 7 3 7 7 7 7 7 7 7 7 5929100000 2904600000 3024500000 2877 1546 2694 16518;16519;16520;16521;16522;16523 19799;19800;19801;19802;19803;19804;19805;19806;19807;19808;19809 19800 11 DKDDLGPDRFSTLTDDPSPR Unmodified 2246.0451 0.045118877 1744 Q14C86;Q14C86-6;Q14C86-5;Q14C86-4;Q14C86-2 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 yes no 0 0 0 2 By MS/MS 4 0 1 1 47.11 47.247 4 9.4265E-10 13289 20211116_3431_TMUAki_TMT10x_P_F4 120.32 97.882 1529900 2593500 37235 2958600 3580000 4026400 2316600 2757500 2900900 2057800 2383700 1424800 2421400 190250 3008400 3403100 4007400 2434000 2846700 2907200 2038600 2315500 1 1 1 1 1 1 1 1 1 1 1 1529900 2593500 37235 2958600 3580000 4026400 2316600 2757500 2900900 2057800 2383700 1424800 2421400 190250 3008400 3403100 4007400 2434000 2846700 2907200 2038600 2315500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 195600000 195600000 0 2878 1744 2695 16524 19810 19810 1 DKDFAIDIIK Unmodified 1176.639 0.63903946 1777 Q15181 PPA1 Inorganic pyrophosphatase yes yes 0 0 0 1 By MS/MS By MS/MS 5.5 0.957 1 2 2 1 3 3 61.676 61.827 3 0.00032064 18360 20211116_3444_TMUAki_TMT10x_S_F5 102.66 57.302 43855000 71099000 216920 74014000 58464000 58831000 43857000 46249000 46687000 45474000 55372000 40833000 66354000 3778900 75074000 55687000 60587000 45338000 47635000 47680000 44444000 53147000 5 5 2 5 5 5 5 5 5 5 5 16816000 25905000 0 27769000 31061000 34845000 19624000 18010000 18018000 16993000 20330000 15656000 24179000 1466000 28303000 29487000 34683000 20453000 19131000 18482000 16638000 19540000 2 2 0 2 2 2 2 2 2 2 2 27040000 45194000 216920 46245000 27403000 23986000 24234000 28239000 28669000 28480000 35043000 25177000 42174000 2312900 46770000 26200000 25904000 24884000 28504000 29198000 27805000 33607000 3 3 2 3 3 3 3 3 3 3 3 3460600000 1538500000 1922100000 2879 1777 2696 16525;16526;16527;16528;16529;16530 19811;19812;19813;19814;19815;19816 19814 6 DKDPPIPVAK Unmodified 1078.6023 0.60226003 654 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 1 By MS/MS 6 0 1 1 40.04 40.204 3 0.011276 9867 20211116_3445_TMUAki_TMT10x_S_F6 61.435 43.704 857870 1507700 11019 1559800 922600 751520 949410 955870 954140 901710 1207200 798840 1407000 82299 1575500 885970 820050 961770 959930 979440 882890 1156700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 857870 1507700 11019 1559800 922600 751520 949410 955870 954140 901710 1207200 798840 1407000 82299 1575500 885970 820050 961770 959930 979440 882890 1156700 2 2 2 2 2 2 2 2 2 2 2 21095000 0 21095000 2880 654 2697 16531 19817;19818 19817 2 DKDPVNK Unmodified 814.41848 0.418482 1372 P62851 RPS25 40S ribosomal protein S25 yes yes 0 0 0 1 By MS/MS 4 0 1 1 30.615 30.649 3 0.07195 6615 20211116_3431_TMUAki_TMT10x_P_F4 49.418 20.722 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2881 1372 2698 16532 19819 19819 1 DKEEIVICDR Unmodified 1275.6129 0.61290107 2932 Q9NRR5;Q9NRR5-2 UBQLN4 Ubiquilin-4 yes no 0 0 0 1 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 38.31 38.202 3 9.7044E-05 12303 20211116_3441_TMUAki_TMT10x_S_F3 118.76 78.839 5882200 8718700 14241 9583500 7431500 7815500 6191700 5508600 5554800 5489700 7049300 5476900 8138700 510420 9689200 7094600 8019200 6325600 5716600 5732000 5362300 6754000 5 5 3 5 5 5 5 5 5 5 5 2839800 4112500 9557.4 4601600 4377500 5003000 2822700 2658100 2669000 2749300 3487800 2644200 3839200 264660 4665800 4158800 5019300 2939800 2823700 2751000 2681300 3339200 2 2 1 2 2 2 2 2 2 2 2 3042400 4606200 4683.8 4982000 3054000 2812500 3369000 2850400 2885800 2740500 3561500 2832700 4299500 245760 5023400 2935800 2999900 3385900 2892900 2980900 2681000 3414700 3 3 2 3 3 3 3 3 3 3 3 383150000 144380000 238760000 2882 2932 2699 16533;16534;16535;16536;16537 19820;19821;19822;19823;19824 19824 5 DKFNECGHVLYADIK Unmodified 1807.8563 0.85631924 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 1 By MS/MS By MS/MS 6.07 1.24 2 3 4 4 2 8 7 49.118 49.356 3;4 1.4289E-09 13137 20211116_3434_TMUAki_TMT10x_P_F6 128.26 102.94 136330000 233710000 632710 247710000 217030000 256570000 145420000 211680000 180510000 180440000 182690000 126940000 218130000 11868000 251850000 206260000 259820000 152340000 216550000 182180000 177270000 176160000 22 22 10 22 22 22 22 22 22 21 21 73140000 124200000 490680 131260000 168470000 206230000 100700000 112030000 98981000 95920000 98056000 68098000 115910000 7027400 134530000 159810000 203350000 105630000 118180000 100740000 94344000 94620000 13 13 6 13 13 13 13 13 13 13 13 63194000 109520000 142030 116450000 48565000 50339000 44722000 99648000 81530000 84523000 84634000 58838000 102220000 4840900 117320000 46457000 56468000 46704000 98374000 81442000 82926000 81538000 9 9 4 9 9 9 9 9 9 8 8 35332000000 20088000000 15244000000 2883 1171 2700 16538;16539;16540;16541;16542;16543;16544;16545;16546;16547;16548;16549;16550;16551;16552 19825;19826;19827;19828;19829;19830;19831;19832;19833;19834;19835;19836;19837;19838;19839;19840;19841;19842;19843;19844;19845;19846 19833 22 DKFPEVIINFPDPAQK Unmodified 1856.9672 0.96724989 1467 Q00341;Q00341-2 HDLBP Vigilin yes no 0 0 0 1 By MS/MS By MS/MS 6.71 0.7 3 3 1 4 3 74.069 74.111 3;4 8.5355E-07 23399 20211116_3434_TMUAki_TMT10x_P_F6 101.96 83.36 11443000 18826000 58464 18125000 12758000 15640000 12983000 10847000 10031000 10908000 13190000 10653000 17564000 849780 18503000 12231000 15979000 13066000 11272000 10446000 10651000 12626000 4 4 1 4 4 4 4 4 4 4 4 4832800 8309000 58464 8207600 4900200 9076200 5556500 5172300 4734800 5208400 6016600 4500000 7752800 433000 8393200 4717100 9104900 5576500 5456900 4898300 5085300 5764300 2 2 1 2 2 2 2 2 2 2 2 6609800 10517000 0 9917400 7858000 6563800 7426200 5675000 5296000 5699800 7173200 6153200 9810900 416780 10110000 7514100 6873600 7489300 5815600 5547600 5565700 6861600 2 2 0 2 2 2 2 2 2 2 2 3393000000 1353100000 2039900000 2884 1467 2701 16553;16554;16555;16556;16557;16558;16559 19847;19848;19849;19850 19849 4 DKFPGEFMK Unmodified 1097.5216 0.52156686 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 51.313 51.7 3 0.076357 14142 20211116_3434_TMUAki_TMT10x_P_F6 47.971 32.999 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2885 3317 2702 16560;16561 19851;19852 19851 2 DKFQETSDEFEAAR Unmodified 1671.7376 0.73764389 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 44.906 44.706 3 3.1697E-34 13786 20211116_3430_TMUAki_TMT10x_P_F3 237.05 208.75 8913700 14769000 42872 16282000 23935000 26933000 13622000 21067000 21808000 16626000 16045000 8299600 13786000 953250 16663000 22691000 26649000 14610000 21582000 21623000 16420000 15656000 5 5 2 5 5 5 5 5 5 5 5 6192700 10056000 42872 11091000 22068000 24818000 11911000 15083000 15836000 12184000 11101000 5766100 9387100 747070 11446000 20905000 24218000 12734000 15740000 15771000 12019000 10855000 3 3 2 3 3 3 3 3 3 3 3 2721000 4712700 0 5191400 1867000 2114500 1711000 5983700 5972000 4441100 4944300 2533500 4399200 206180 5216200 1785800 2430900 1875600 5842400 5852500 4401000 4801400 2 2 0 2 2 2 2 2 2 2 2 1149700000 949360000 200320000 2886 1723 2703 16562;16563;16564;16565;16566;16567 19853;19854;19855;19856;19857;19858;19859;19860 19855 8 DKFSFDLGKGEVIK Unmodified 1581.8403 0.84025847 1497 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 0 0 0 2 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 58.743 59.097 4 6.9786E-09 17781 20211116_3436_TMUAki_TMT10x_P_F8 122.14 86.117 165590000 254530000 3142700 269000000 254730000 326660000 190230000 189710000 186190000 189580000 198820000 154200000 237560000 17906000 274260000 242810000 326140000 196210000 199800000 190040000 185160000 191400000 7 7 7 7 7 7 7 7 7 7 7 136390000 206850000 2817700 217860000 232790000 301040000 164990000 156360000 151060000 156330000 161220000 127010000 193060000 15284000 222720000 221670000 298300000 170470000 166280000 154650000 152690000 155210000 5 5 5 5 5 5 5 5 5 5 5 29196000 47679000 324990 51132000 21940000 25611000 25241000 33350000 35134000 33246000 37598000 27187000 44503000 2621800 51538000 21140000 27839000 25736000 33515000 35397000 32474000 36193000 2 2 2 2 2 2 2 2 2 2 2 11838000000 6035600000 5802200000 2887 1497 2704 16568;16569;16570;16571 19861;19862;19863;19864;19865;19866;19867 19864 7 DKFSPFPVQDRPESSLVFK Unmodified 2222.1372 0.13716877 3216 Q9UQ35;Q9UQ35-2 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 0 0 0 2 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 62.85 62.832 4 1.2083E-51 21349 20211116_3439_TMUAki_TMT10x_S_F1 237.5 223.34 59019000 100540000 727150 83358000 69014000 94561000 69364000 62657000 64629000 68699000 73193000 54957000 93753000 5685400 86420000 66225000 94924000 70194000 65496000 66260000 66846000 70341000 7 7 6 7 7 7 7 7 7 7 7 31590000 51908000 290790 43873000 35968000 62907000 39172000 33138000 33218000 36073000 37190000 29415000 48405000 2926000 45610000 34584000 62242000 39382000 35283000 34195000 35110000 35753000 4 4 3 4 4 4 4 4 4 4 4 27429000 48636000 436350 39485000 33047000 31654000 30192000 29519000 31410000 32626000 36003000 25542000 45348000 2759400 40810000 31642000 32682000 30812000 30213000 32064000 31736000 34588000 3 3 3 3 3 3 3 3 3 3 3 7242000000 4053600000 3188400000 2888 3216 2705 16572;16573;16574;16575 19868;19869;19870;19871;19872;19873;19874 19872 7 DKGEYTLVVK Unmodified 1150.6234 0.6233894 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 1 By MS/MS By MS/MS 6 1.05 1 2 2 4 6 3 45.506 45.698 3 1.3496E-05 13642 20211116_3435_TMUAki_TMT10x_P_F7 103.75 75.468 41727000 65761000 382960 70249000 56065000 54545000 46680000 40603000 38500000 40156000 51818000 38855000 61379000 3956000 71113000 53541000 56222000 47587000 41972000 39998000 39237000 49574000 9 9 6 9 9 9 9 9 9 9 9 17998000 28211000 58029 28849000 29014000 31925000 20054000 16839000 15791000 16756000 21643000 16758000 26326000 1669500 29432000 27596000 31994000 20678000 17879000 16459000 16368000 20697000 4 4 3 4 4 4 4 4 4 4 4 23730000 37551000 324930 41399000 27051000 22621000 26626000 23764000 22709000 23400000 30174000 22097000 35053000 2286500 41681000 25945000 24228000 26909000 24093000 23539000 22869000 28877000 5 5 3 5 5 5 5 5 5 5 5 2684500000 1267100000 1417400000 2889 755 2706 16576;16577;16578;16579;16580;16581;16582;16583;16584 19875;19876;19877;19878;19879;19880;19881;19882;19883;19884;19885;19886 19881 12 DKGFGFIR Unmodified 938.4974 0.49740102 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 45.693 45.582 3 0.0013585 11864 20211116_3447_TMUAki_TMT10x_S_F8 100.25 75.427 6184800 10743000 79186 8365000 19215000 18545000 8682600 16362000 15435000 13106000 12427000 5759200 10016000 769060 8853900 18165000 18215000 9566900 16649000 15300000 12934000 12081000 2 2 2 2 2 2 2 2 2 2 2 3753000 6462600 41538 4843800 16558000 15943000 6601000 10334000 10024000 8306500 7705100 3494700 6024200 529210 5221800 15629000 15431000 7322300 10729000 9965400 8196100 7504600 1 1 1 1 1 1 1 1 1 1 1 2431800 4280700 37648 3521200 2656900 2602100 2081600 6028300 5410800 4799800 4721600 2264500 3991500 239850 3632100 2535400 2784600 2244600 5919500 5334400 4738300 4576100 1 1 1 1 1 1 1 1 1 1 1 1107100000 859210000 247870000 2890 1779 2707 16585;16586;16587;16588 19887;19888;19889;19890 19890 4 DKHIEEVRK Unmodified 1152.6251 0.62512073 698 P16949 STMN1 Stathmin yes yes 0 0 0 2 By MS/MS 4.5 0.5 3 3 6 29.154 29.141 3;4;5 0.00085384 6329 20211116_3433_TMUAki_TMT10x_P_F5 104.07 84.308 2532900 4509000 36780 2827300 4603800 6153200 3654600 3308900 3409200 2957000 3579400 2358600 4201000 264130 3052900 4392100 5999400 3749100 3497300 3485100 2902500 3447600 6 6 4 6 6 6 6 6 6 6 6 2532900 4509000 36780 2827300 4603800 6153200 3654600 3308900 3409200 2957000 3579400 2358600 4201000 264130 3052900 4392100 5999400 3749100 3497300 3485100 2902500 3447600 6 6 4 6 6 6 6 6 6 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 196340000 196340000 0 2891 698 2708 16589;16590;16591;16592;16593;16594 19891;19892;19893;19894;19895;19896 19894 6 DKIIVNDR Unmodified 971.53999 0.53999412 3285 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 32.789 32.772 3 0.02248 7526 20211116_3431_TMUAki_TMT10x_P_F4 60.434 13.972 1358200 2233300 3470.1 1883100 2623100 3187500 1901800 1977500 2084900 1830900 2182700 1264600 2082600 133300 1965300 2497200 3139600 1972500 2067200 2116500 1794200 2102600 2 2 1 2 2 2 2 2 2 2 2 1358200 2233300 3470.1 1883100 2623100 3187500 1901800 1977500 2084900 1830900 2182700 1264600 2082600 133300 1965300 2497200 3139600 1972500 2067200 2116500 1794200 2102600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 70885000 70885000 0 2892 3285 2709 16595;16596 19897;19898 19897 2 DKITGQSLGYGFVNYIDPK Unmodified 2114.0684 0.068420501 815 P26378;P26378-4;P26378-2;P26378-5;P26378-1;P26378-3;Q12926;Q12926-2 ELAVL4;ELAVL2 ELAV-like protein 4;ELAV-like protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 5.33 3.09 4 4 4 6 6 71.475 71.541 3;4 2.499E-17 22924 20211116_3436_TMUAki_TMT10x_P_F8 142.78 126.48 108250000 183660000 1169300 140640000 130330000 194100000 147200000 136390000 132960000 143970000 140820000 100800000 171210000 8513700 147320000 125430000 193140000 147990000 141810000 136170000 140290000 135600000 18 18 8 18 18 18 18 18 18 18 18 59996000 100870000 567910 77782000 64857000 129290000 82441000 74735000 73837000 79174000 76039000 55865000 94035000 3978700 81751000 62656000 127310000 82438000 78872000 75571000 77142000 73283000 8 8 4 8 8 8 8 8 8 8 8 48259000 82786000 601420 62863000 65468000 64812000 64756000 61652000 59124000 64794000 64780000 44936000 77174000 4534900 65567000 62775000 65835000 65548000 62937000 60596000 63152000 62316000 10 10 4 10 10 10 10 10 10 10 10 20981000000 11186000000 9794900000 2893 815 2710 16597;16598;16599;16600;16601;16602;16603;16604;16605;16606;16607;16608 19899;19900;19901;19902;19903;19904;19905;19906;19907;19908;19909;19910;19911;19912;19913;19914;19915;19916 19906 18 DKLDGNELDLSLSDLNEVPVK Unmodified 2312.1747 0.17473607 2409 Q96AG4 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 0 0 0 1 By MS/MS By MS/MS 3.62 1.15 3 3 3 4 6 7 76.58 76.532 3;4 4.0499E-26 25513 20211116_3433_TMUAki_TMT10x_P_F5 161.58 143.98 102210000 178250000 648130 157630000 114350000 143820000 123760000 93989000 96577000 105260000 123370000 95163000 166250000 8228400 162060000 109870000 146240000 124200000 98414000 100390000 102340000 118180000 17 17 10 17 17 17 17 17 17 17 17 37745000 61995000 224300 53655000 37301000 65765000 43217000 33755000 35070000 38024000 43552000 35145000 57817000 2846800 55507000 35916000 65531000 43275000 36063000 36335000 36960000 41750000 7 7 4 7 7 7 7 7 7 7 7 64461000 116260000 423830 103980000 77048000 78052000 80539000 60234000 61507000 67236000 79816000 60018000 108430000 5381600 106550000 73956000 80713000 80922000 62351000 64055000 65377000 76429000 10 10 6 10 10 10 10 10 10 10 10 19899000000 9336000000 10563000000 2894 2409 2711 16609;16610;16611;16612;16613;16614;16615;16616;16617;16618;16619;16620;16621 19917;19918;19919;19920;19921;19922;19923;19924;19925;19926;19927;19928;19929;19930;19931;19932;19933 19922 17 DKLESEMEDAYHEHQANLLR Oxidation (M) 2443.1074 0.10740156 777 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 1 1 By MS/MS By MS/MS 3 1.25 4 7 5 9 3 11 17 33.144 33.135 3;4;5 2.1985E-41 12295 20211116_3441_TMUAki_TMT10x_S_F3 204.63 193.64 52199000 87452000 559350 97493000 73666000 75768000 48383000 80948000 87547000 73103000 76256000 48605000 81640000 4092800 98425000 70023000 78644000 51611000 81806000 86950000 71720000 73911000 41 42 20 42 42 42 42 42 42 42 42 21378000 34199000 272090 38071000 44270000 49511000 24762000 29842000 31825000 27473000 28857000 19907000 31926000 1576000 38736000 41973000 49291000 26355000 31263000 31962000 26929000 27929000 19 19 11 19 19 19 19 19 19 19 19 30821000 53253000 287260 59423000 29396000 26257000 23622000 51105000 55722000 45630000 47399000 28698000 49714000 2516800 59689000 28050000 29353000 25256000 50543000 54987000 44790000 45982000 22 23 9 23 23 23 23 23 23 23 23 21216000000 13071000000 8144800000 2895 777 2712 16622;16623;16624;16625;16626;16627;16628;16629;16630;16631;16632;16633;16634;16635;16636;16637;16638;16639;16640;16641;16642;16643;16644;16645;16646;16647;16648;16649 19934;19935;19936;19937;19938;19939;19940;19941;19942;19943;19944;19945;19946;19947;19948;19949;19950;19951;19952;19953;19954;19955;19956;19957;19958;19959;19960;19961;19962;19963;19964;19965;19966;19967;19968;19969;19970;19971;19972;19973;19974;19975 19961 907 42 DKLESEMEDAYHEHQANLLR Unmodified 2427.1125 0.11248694 777 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 1 By MS/MS By MS/MS 3.11 1.52 4 3 4 4 3 1 8 11 53.064 53.005 4;5 8.0343E-59 16030 20211116_3442_TMUAki_TMT10x_S_F4 249.14 239.16 102210000 160190000 1167100 189820000 112280000 106710000 110070000 65599000 55018000 70467000 106200000 95174000 149580000 9036800 190320000 107630000 112920000 110060000 68917000 60196000 68621000 100860000 25 25 18 25 25 25 25 25 25 25 25 49146000 76541000 382480 92400000 59230000 69813000 59113000 26772000 19937000 29996000 45791000 45759000 71480000 4147300 92806000 56786000 71547000 58754000 29488000 22914000 29163000 43372000 9 9 5 9 9 9 9 9 9 9 9 53068000 83646000 784580 97424000 53045000 36902000 50954000 38827000 35081000 40471000 60407000 49415000 78102000 4889500 97510000 50841000 41369000 51303000 39429000 37282000 39458000 57489000 16 16 13 16 16 16 16 16 16 16 16 25846000000 13543000000 12304000000 2896 777 2712 16650;16651;16652;16653;16654;16655;16656;16657;16658;16659;16660;16661;16662;16663;16664;16665;16666;16667;16668 19976;19977;19978;19979;19980;19981;19982;19983;19984;19985;19986;19987;19988;19989;19990;19991;19992;19993;19994;19995;19996;19997;19998;19999;20000 19995 25 DKLNNLVLFDK Unmodified 1317.7293 0.72925145 1372 P62851 RPS25 40S ribosomal protein S25 yes yes 0 0 0 1 By MS/MS By MS/MS 5.9 2.55 2 2 3 3 6 4 63.687 63.957 2;3 2.4641E-09 19774 20211116_3436_TMUAki_TMT10x_P_F8 170.4 121.84 208270000 352760000 949860 369350000 281790000 322150000 214530000 216080000 232670000 246550000 267350000 193920000 329220000 18785000 374920000 268530000 328710000 221690000 225960000 237140000 239540000 256830000 11 11 7 11 11 11 11 11 11 11 11 103270000 173680000 504260 180930000 207030000 236670000 141560000 109280000 112650000 116890000 129110000 96151000 162080000 10088000 184900000 196870000 234800000 146120000 117770000 116460000 113850000 124030000 8 8 4 8 8 8 8 8 8 8 8 105000000 179080000 445600 188420000 74756000 85479000 72974000 106800000 120010000 129660000 138240000 97770000 167140000 8697000 190020000 71662000 93909000 75570000 108200000 120680000 125690000 132790000 3 3 3 3 3 3 3 3 3 3 3 13595000000 9060500000 4534400000 2897 1372 2713 16669;16670;16671;16672;16673;16674;16675;16676;16677;16678 20001;20002;20003;20004;20005;20006;20007;20008;20009;20010;20011;20012;20013 20008 13 DKNEQAFEEVFQNANFR Unmodified 2084.9552 0.95518166 828 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 4.83 1.07 1 1 2 2 4 2 65.722 65.709 3 4.1561E-43 21021 20211116_3433_TMUAki_TMT10x_P_F5 227 218.91 61139000 102070000 367330 97904000 65844000 82743000 70332000 48881000 47724000 54304000 69875000 56926000 95224000 5090500 99946000 63244000 84467000 70406000 51571000 50326000 52812000 66720000 10 10 3 10 10 10 10 10 10 10 10 35700000 58811000 324540 56606000 35745000 59361000 39980000 29161000 28234000 32336000 40959000 33241000 54868000 3044800 57944000 34386000 59624000 39968000 31268000 29689000 31450000 39118000 6 6 2 6 6 6 6 6 6 6 6 25439000 43257000 42785 41298000 30099000 23382000 30352000 19721000 19490000 21968000 28916000 23685000 40356000 2045700 42001000 28858000 24843000 30438000 20303000 20638000 21362000 27603000 4 4 1 4 4 4 4 4 4 4 4 9004100000 6094600000 2909400000 2898 828 2714 16679;16680;16681;16682;16683;16684 20014;20015;20016;20017;20018;20019;20020;20021;20022;20023 20017 10 DKPAQIR Unmodified 826.4661 0.4661009 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 28.319 28.246 3 0.015223 6012 20211116_3433_TMUAki_TMT10x_P_F5 80.684 23.873 463180 768580 6579.6 643750 466720 861100 532570 373450 429730 414530 533710 431320 716700 44583 668800 449570 852860 533580 405540 445360 403160 511630 1 1 1 1 1 1 1 1 1 1 1 463180 768580 6579.6 643750 466720 861100 532570 373450 429730 414530 533710 431320 716700 44583 668800 449570 852860 533580 405540 445360 403160 511630 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16926000 16926000 0 2899 1147 2715 16685;16686 20024;20025 20025 2 DKPDNFQLFQSPHGK Unmodified 1756.8533 0.85328277 49 CON__Q29443;CON__Q0IIK2 yes no 0 0 0 1 By MS/MS 7 0 1 1 46.026 46.575 4 5.3676E-05 13967 20211116_3435_TMUAki_TMT10x_P_F7 95.015 79.249 + 4388100 7152000 0 8432500 11293000 13636000 7318600 8894500 10087000 8304900 7260400 4085400 6678400 417430 8589900 10725000 13464000 7717000 9265000 10040000 8135300 7091400 2 2 0 2 2 2 2 2 2 2 2 4388100 7152000 0 8432500 11293000 13636000 7318600 8894500 10087000 8304900 7260400 4085400 6678400 417430 8589900 10725000 13464000 7717000 9265000 10040000 8135300 7091400 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 313750000 313750000 0 2900 49 2716 16687 20026;20027 20026 2 DKPELQFPFLQDEDTVATLLECK Unmodified 2735.3364 0.33639844 581 P09543;P09543-2 CNP 2',3'-cyclic-nucleotide 3'-phosphodiesterase yes no 0 0 0 1 By matching By MS/MS 4.33 0.471 2 1 1 2 80.311 80.31 4 4.1742E-21 27207 20211116_3442_TMUAki_TMT10x_S_F4 156.29 137.73 3740600 6609100 3608.3 5975400 5031900 3910900 5059900 2566800 2731800 3248200 4271300 3482800 6164700 316810 6109800 4824800 4081300 5059000 2697900 2935700 3144300 4072700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3740600 6609100 3608.3 5975400 5031900 3910900 5059900 2566800 2731800 3248200 4271300 3482800 6164700 316810 6109800 4824800 4081300 5059000 2697900 2935700 3144300 4072700 2 2 1 2 2 2 2 2 2 2 2 2866200000 1081900000 1784300000 2901 581 2717 16688;16689;16690 20028;20029 20028 2 DKPLKDVIIADCGK Unmodified 1570.8389 0.83887826 779 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 0 2 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 50.442 50.786 4 3.4463E-09 13729 20211116_3434_TMUAki_TMT10x_P_F6 131.69 119.53 22847000 40918000 417700 33294000 42816000 48882000 31532000 47285000 45422000 41391000 42320000 21275000 38153000 2470600 34737000 40790000 48800000 33004000 47980000 45491000 40667000 40920000 7 7 5 7 7 7 7 7 7 7 7 8148100 14100000 134070 11236000 26541000 28117000 14727000 16189000 15301000 14003000 13993000 7587000 13146000 968240 11917000 25154000 27334000 15574000 16996000 15495000 13766000 13539000 3 3 2 3 3 3 3 3 3 3 3 14699000 26819000 283630 22058000 16275000 20765000 16805000 31097000 30121000 27388000 28327000 13688000 25007000 1502400 22820000 15636000 21466000 17430000 30985000 29996000 26901000 27381000 4 4 3 4 4 4 4 4 4 4 4 2050500000 1233500000 816970000 2902 779 2718 16691;16692;16693;16694 20030;20031;20032;20033;20034;20035;20036 20030 7 DKPLPPLLAR Unmodified 1118.6812 0.68117905 1735;1571 Q14839;Q14839-2;Q8TDI0;Q12873;Q12873-3;Q12873-2 CHD4;CHD5;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3 no no 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 1 1 1 1 48.825 48.746 3 0.0018963 15526 20211116_3439_TMUAki_TMT10x_S_F1 73.435 50.416 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2903 1735;1571 2719 16695;16696 20037;20038 20038 2 DKPNPQLIYDDEIPSLK Unmodified 1984.0153 0.015322298 3241 Q9Y2L1;Q9Y2L1-2 DIS3 Exosome complex exonuclease RRP44 yes no 0 0 0 1 By MS/MS 6 0 1 1 64.581 64.536 3 0.019306 19798 20211116_3445_TMUAki_TMT10x_S_F6 43.955 32.685 4095400 5971000 0 8354800 3513600 2834300 3872900 2404900 2614100 2571800 3833500 3813200 5580500 328420 8272300 3377900 3218300 3870700 2471800 2757800 2504900 3660300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4095400 5971000 0 8354800 3513600 2834300 3872900 2404900 2614100 2571800 3833500 3813200 5580500 328420 8272300 3377900 3218300 3870700 2471800 2757800 2504900 3660300 1 1 0 1 1 1 1 1 1 1 1 491720000 0 491720000 2904 3241 2720 16697 20039 20039 1 DKPSGDTAAVFEEGGDVDDLLDMI Oxidation (M) 2524.1163 0.11629449 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 1 1 By MS/MS By MS/MS 1.76 0.588 12 22 3 21 16 50.417 50.349 2;3 6.3206E-13 26169 20211116_3428_TMUAki_TMT10x_P_F1 121.33 117.67 46946000 78275000 317850 68993000 56837000 64907000 59780000 42436000 46506000 48048000 59811000 43711000 73004000 3132000 70979000 54570000 65870000 60073000 44449000 48365000 46695000 57285000 47 47 21 47 47 47 47 47 47 47 47 16762000 27652000 67763 23656000 15447000 31972000 19256000 17639000 18566000 19008000 21130000 15607000 25788000 1117900 24539000 14901000 31736000 19311000 18699000 19009000 18508000 20304000 25 25 10 25 25 25 25 25 25 25 25 30183000 50623000 250090 45337000 41389000 32936000 40524000 24797000 27940000 29040000 38681000 28104000 47217000 2014000 46439000 39669000 34135000 40761000 25750000 29356000 28187000 36981000 22 22 11 22 22 22 22 22 22 22 22 17670000000 10722000000 6947700000 2905 648 2721 16698;16699;16700;16701;16702;16703;16704;16705;16706;16707;16708;16709;16710;16711;16712;16713;16714;16715;16716;16717;16718;16719;16720;16721;16722;16723;16724;16725;16726;16727;16728;16729;16730;16731;16732;16733;16734 20040;20041;20042;20043;20044;20045;20046;20047;20048;20049;20050;20051;20052;20053;20054;20055;20056;20057;20058;20059;20060;20061;20062;20063;20064;20065;20066;20067;20068;20069;20070;20071;20072;20073;20074;20075;20076;20077;20078;20079;20080;20081;20082;20083;20084;20085;20086;20087;20088 20040 695 49 DKPSGDTAAVFEEGGDVDDLLDMI Unmodified 2508.1214 0.12137987 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 3 1 2 84.608 84.613 2;3 2.1761E-07 28822 20211116_3439_TMUAki_TMT10x_S_F1 87.148 82.757 2811400 4841000 46117 4486900 2804100 4510100 3489300 2150400 2025300 2417800 2972200 2617400 4515800 190610 4602700 2703200 4540200 3458200 2313500 2158000 2350300 2837900 3 3 1 3 3 3 3 3 3 3 3 2705100 4655700 46117 4268900 2658300 4385900 3319100 2045700 1937500 2310500 2840100 2518400 4342800 183350 4384000 2562900 4408300 3289400 2205900 2063600 2245600 2711800 2 2 1 2 2 2 2 2 2 2 2 106390 185290 0 217990 145790 124220 170160 104710 87775 107330 132150 99041 173020 7260.3 218670 140270 131890 168780 107530 94476 104720 126110 1 1 0 1 1 1 1 1 1 1 1 1691100000 1678000000 13024000 2906 648 2721 16735;16736;16737 20089;20090;20091;20092 20092 4 DKPSVEPVEEYDYEDLK Unmodified 2053.9368 0.93679721 3291 Q9Y450;Q9Y450-2 HBS1L HBS1-like protein yes no 0 0 0 1 By MS/MS 4 0 1 1 57.173 57.126 3 6.8858E-07 17760 20211116_3442_TMUAki_TMT10x_S_F4 100.77 85.352 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2907 3291 2722 16738 20093 20093 1 DKPTETLLNTVK Unmodified 1357.7453 0.74529545 2556 Q96SI9;Q96SI9-2 STRBP Spermatid perinuclear RNA-binding protein yes no 0 0 0 1 By MS/MS 6 0 1 1 50.833 50.934 3 0.00097258 13828 20211116_3434_TMUAki_TMT10x_P_F6 75.462 59.572 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2908 2556 2723 16739 20094 20094 1 DKPVTGEQIEVFANK Unmodified 1673.8625 0.86245047 2462 Q96FV9 THOC1 THO complex subunit 1 yes yes 0 0 0 1 By MS/MS 5 0 1 1 53.295 53.476 3 0.00042788 14938 20211116_3444_TMUAki_TMT10x_S_F5 67.846 55.68 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2909 2462 2724 16740 20095 20095 1 DKQNIFEFFER Unmodified 1471.7096 0.70957864 1508 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 69.83 70.191 3 9.4491E-06 24122 20211116_3446_TMUAki_TMT10x_S_F7 112.42 99.862 13775000 22054000 5112.2 18338000 15966000 23329000 17240000 17750000 16905000 18257000 17543000 12826000 20564000 1175800 19045000 15341000 23333000 17410000 18344000 17235000 17810000 16903000 2 2 1 2 2 2 2 2 2 2 2 7179000 10590000 5112.2 9149700 7780700 15072000 8938300 8664400 8461400 9126900 9092200 6684400 9876600 608380 9524500 7489900 14845000 8991300 9146600 8651300 8894700 8751400 1 1 1 1 1 1 1 1 1 1 1 6595800 11463000 0 9188700 8184900 8257500 8301500 9085800 8443200 9129800 8450500 6141300 10688000 567420 9520700 7850900 8488300 8418900 9197300 8583600 8914900 8151700 1 1 0 1 1 1 1 1 1 1 1 1185600000 506110000 679480000 2910 1508 2725 16741;16742 20096;20097 20097 2 DKQNKPTGFALGSIEGR Unmodified 1816.9432 0.94316041 1431 P78406 RAE1 mRNA export factor yes yes 0 0 0 2 By MS/MS By MS/MS 8 0 2 1 1 43.619 43.63 3;4 2.6371E-11 11013 20211116_3447_TMUAki_TMT10x_S_F8 138.03 122.15 1105600 2076600 0 1529400 853260 1122000 674080 3377500 2827200 2636500 2441000 1029300 1935700 78402 1592800 813010 1218800 759770 3298000 2768200 2605500 2366700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1105600 2076600 0 1529400 853260 1122000 674080 3377500 2827200 2636500 2441000 1029300 1935700 78402 1592800 813010 1218800 759770 3298000 2768200 2605500 2366700 1 1 0 1 1 1 1 1 1 1 1 121820000 0 121820000 2911 1431 2726 16743;16744 20098;20099 20099 2 DKQPYEQK Unmodified 1034.5033 0.50327426 817 P26583 HMGB2 High mobility group protein B2 yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 30.701 30.637 3 0.00092296 6631 20211116_3431_TMUAki_TMT10x_P_F4 121.83 64.24 432280 653780 2812.8 599990 647990 813390 430330 360510 452050 387660 471910 402520 609840 41482 619080 616020 805290 448560 390210 459640 377490 454620 1 1 1 1 1 1 1 1 1 1 1 432280 653780 2812.8 599990 647990 813390 430330 360510 452050 387660 471910 402520 609840 41482 619080 616020 805290 448560 390210 459640 377490 454620 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34919000 34919000 0 2912 817 2727 16745;16746 20100;20101 20100 2 DKTEKPDTVQLLTVK Unmodified 1713.9513 0.95126548 1501 Q02952;Q02952-3;Q02952-2 AKAP12 A-kinase anchor protein 12 yes no 0 0 0 2 By MS/MS By MS/MS 7 0 2 1 1 49.459 50.026 4 2.592E-06 15348 20211116_3435_TMUAki_TMT10x_P_F7 106.6 64.26 13506000 20192000 247060 26017000 29635000 26930000 16030000 22798000 23797000 17621000 22258000 12578000 18863000 1575900 26144000 28088000 27285000 17212000 23233000 23815000 17423000 21520000 3 3 3 3 3 3 3 3 3 3 3 7888800 10924000 174800 14005000 24402000 22136000 11394000 12601000 13247000 9563200 12084000 7346500 10205000 1048200 14191000 23081000 21835000 12295000 13202000 13354000 9465100 11693000 2 2 2 2 2 2 2 2 2 2 2 5617700 9268700 72259 12012000 5233200 4793200 4636100 10198000 10550000 8058100 10175000 5231100 8658900 527700 11953000 5007200 5449700 4916900 10031000 10461000 7958100 9827000 1 1 1 1 1 1 1 1 1 1 1 1322000000 694110000 627890000 2913 1501 2728 16747;16748 20102;20103;20104 20103 3 DKTSPFELYQFFVR Unmodified 1775.8883 0.88827129 3257 Q9Y2Z4 YARS2 Tyrosine--tRNA ligase, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 78.431 78.38 3 8.9698E-05 27600 20211116_3430_TMUAki_TMT10x_P_F3 83.751 62.45 3874700 6916900 147750 6199300 4686800 4734000 5575300 2961700 2912000 3748700 4402200 3608900 6451600 470320 6353100 4525200 4873300 5526400 3124200 3131900 3628800 4200500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3874700 6916900 147750 6199300 4686800 4734000 5575300 2961700 2912000 3748700 4402200 3608900 6451600 470320 6353100 4525200 4873300 5526400 3124200 3131900 3628800 4200500 1 1 1 1 1 1 1 1 1 1 1 1257400000 0 1257400000 2914 3257 2729 16749;16750;16751 20105;20106 20105 2 DKVAGHSLGYGFVNYVTAK Unmodified 2025.032 0.031975415 1825 Q15717;Q15717-2 ELAVL1 ELAV-like protein 1 yes no 0 0 0 1 By MS/MS 2 0 1 1 56.709 56.459 4 1.9532E-05 18288 20211116_3429_TMUAki_TMT10x_P_F2 81.967 66.545 2242000 4230800 5760.4 3556200 3938600 7125400 3814500 4615800 4207500 4118600 3664100 2087600 3945200 215010 3729000 3773700 6982400 3887800 4804800 4243900 4042900 3551400 1 1 1 1 1 1 1 1 1 1 1 2242000 4230800 5760.4 3556200 3938600 7125400 3814500 4615800 4207500 4118600 3664100 2087600 3945200 215010 3729000 3773700 6982400 3887800 4804800 4243900 4042900 3551400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 972300000 972300000 0 2915 1825 2730 16752 20107 20107 1 DKVDVASVIVTK Unmodified 1272.7289 0.7289171 1286 P61011;P61011-2 SRP54 Signal recognition particle 54 kDa protein yes no 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 54.36 54.98 3 0.024422 17297 20211116_3435_TMUAki_TMT10x_P_F7 58.079 29.314 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2916 1286 2731 16753;16754 20108;20109 20108 2 DKVNCSFYFK Unmodified 1306.6016 0.6016081 597 Q01081;P0DN76;Q01081-2;Q8WU68;Q01081-3;Q8WU68-3;Q8WU68-2 U2AF1;U2AF1L4 Splicing factor U2AF 35 kDa subunit;Splicing factor U2AF 26 kDa subunit yes no 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 50.19 50.121 3 0.00011045 16169 20211116_3439_TMUAki_TMT10x_S_F1 117.79 76.252 19804000 37517000 215290 28346000 47177000 61675000 29912000 69232000 61508000 52985000 45294000 18441000 34973000 2212500 30064000 44814000 60945000 32222000 69522000 60616000 52418000 44195000 7 7 6 7 7 7 7 7 7 7 7 9699800 17657000 169780 13355000 34138000 46123000 20057000 33854000 30459000 26187000 22247000 9032700 16460000 1304700 14418000 32389000 44690000 21403000 34810000 30240000 25892000 21715000 3 3 3 3 3 3 3 3 3 3 3 10105000 19860000 45518 14992000 13039000 15552000 9855100 35378000 31049000 26798000 23047000 9408600 18513000 907850 15646000 12425000 16254000 10819000 34712000 30376000 26526000 22480000 4 4 3 4 4 4 4 4 4 4 4 1671000000 1030500000 640500000 2917 597 2732 16755;16756;16757;16758 20110;20111;20112;20113;20114;20115;20116 20114 7 DKVQAGDVITIDK Unmodified 1400.7511 0.75110911 3221 Q9Y230;Q9Y230-2 RUVBL2 RuvB-like 2 yes no 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 48.316 48.466 3 4.1813E-06 12790 20211116_3434_TMUAki_TMT10x_P_F6 107.34 86.676 10991000 17462000 42655 18029000 18380000 19707000 12578000 15582000 16606000 14398000 15816000 10234000 16296000 1028100 18377000 17478000 19880000 13187000 16015000 16689000 14110000 15281000 4 4 2 4 4 4 4 4 4 4 4 6202100 9491000 15294 9207800 12770000 14868000 8008800 8447900 9345400 7959600 8525500 5774800 8855100 611170 9498100 12125000 14653000 8414000 8898600 9419800 7793900 8249600 2 2 1 2 2 2 2 2 2 2 2 4788900 7971300 27361 8820900 5610100 4839400 4569400 7133700 7260500 6437900 7290200 4459000 7441200 416920 8879200 5353600 5227200 4772600 7116400 7269600 6316300 7031600 2 2 1 2 2 2 2 2 2 2 2 854400000 449130000 405280000 2918 3221 2733 16759;16760;16761;16762 20117;20118;20119;20120 20118 4 DKVVALAEGR Unmodified 1056.5928 0.59275797 2205 Q8N6T3;Q8N6T3-5;Q8N6T3-3;Q8N6T3-2 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 yes no 0 0 0 1 By MS/MS 6 0 1 1 39.506 39.67 3 0.090075 9652 20211116_3445_TMUAki_TMT10x_S_F6 38.189 20.325 284760 445040 18313 525940 277260 256010 305970 287600 302200 290300 397940 265270 415570 40570 526800 267680 278170 308740 290900 311000 283410 380910 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 284760 445040 18313 525940 277260 256010 305970 287600 302200 290300 397940 265270 415570 40570 526800 267680 278170 308740 290900 311000 283410 380910 1 1 1 1 1 1 1 1 1 1 1 10020000 0 10020000 2919 2205 2734 16763 20121 20121 1 DKWLAPDGLIFPDR Unmodified 1641.8515 0.85149185 2612 Q99873;Q99873-2;Q99873-3 PRMT1 Protein arginine N-methyltransferase 1 yes no 0 0 0 1 By MS/MS 7 0 1 1 71.128 71.37 3 0.00022503 24637 20211116_3446_TMUAki_TMT10x_S_F7 78.441 55.205 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2920 2612 2735 16764 20122 20122 1 DKWSPALQIR Unmodified 1212.6615 0.66150624 1294 P61088;Q5JXB2 UBE2N;UBE2NL Ubiquitin-conjugating enzyme E2 N;Putative ubiquitin-conjugating enzyme E2 N-like yes no 0 0 0 1 By MS/MS 1 0 1 1 48.44 48.188 3 0.00091891 15343 20211116_3439_TMUAki_TMT10x_S_F1 80.871 59.423 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2921 1294 2736 16765 20123 20123 1 DKYGPPVR Unmodified 930.49232 0.49231565 1613 Q13247;Q13247-3 SRSF6 Serine/arginine-rich splicing factor 6 yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 31.233 31.218 3 0.039858 7179 20211116_3433_TMUAki_TMT10x_P_F5 53.517 27.958 758960 1136700 29422 1107000 1636900 1471000 941010 813080 995640 751830 1042200 706890 1060600 102640 1136800 1553900 1461300 992590 858060 1012200 736800 1004000 1 1 1 1 1 1 1 1 1 1 1 758960 1136700 29422 1107000 1636900 1471000 941010 813080 995640 751830 1042200 706890 1060600 102640 1136800 1553900 1461300 992590 858060 1012200 736800 1004000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27488000 27488000 0 2922 1613 2737 16766;16767 20124 20124 1 DKYGVFPLR Unmodified 1093.592 0.59202969 625 P11388;P11388-2;P11388-3;P11388-4 TOP2A DNA topoisomerase 2-alpha yes no 0 0 0 1 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 49.106 48.96 3 1.4371E-05 13710 20211116_3436_TMUAki_TMT10x_P_F8 115.78 88.3 21025000 34656000 362700 34121000 31580000 36740000 24209000 34310000 38698000 33256000 31346000 19578000 32336000 2176500 34886000 30113000 37212000 25391000 34975000 38474000 32523000 30466000 7 7 5 7 7 7 7 7 7 7 7 10003000 16008000 284470 16141000 21562000 26257000 14572000 16246000 18848000 15940000 14654000 9315600 14938000 1256300 16608000 20517000 25900000 15279000 17013000 18839000 15581000 14266000 3 3 3 3 3 3 3 3 3 3 3 11022000 18648000 78229 17980000 10017000 10482000 9637600 18065000 19850000 17315000 16692000 10263000 17398000 920230 18278000 9596700 11312000 10112000 17962000 19635000 16942000 16200000 4 4 2 4 4 4 4 4 4 4 4 2047900000 1257300000 790600000 2923 625 2738 16768;16769;16770;16771;16772;16773 20125;20126;20127;20128;20129;20130;20131;20132 20128 8 DKYPNLQVIGGNVVTAAQAK Unmodified 2085.1219 0.12185306 640 P12268 IMPDH2 Inosine-5'-monophosphate dehydrogenase 2 yes yes 0 0 0 1 By MS/MS 2 0 1 1 63.196 62.959 4 8.5916E-10 19636 20211116_3440_TMUAki_TMT10x_S_F2 120.11 105.42 3807600 6530600 0 6123400 3715400 3917900 4225200 4220000 4470300 4591700 5125300 3545000 6092200 278970 6242600 3573000 4134200 4266700 4286400 4560300 4469200 4923900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3807600 6530600 0 6123400 3715400 3917900 4225200 4220000 4470300 4591700 5125300 3545000 6092200 278970 6242600 3573000 4134200 4266700 4286400 4560300 4469200 4923900 1 1 0 1 1 1 1 1 1 1 1 377950000 0 377950000 2924 640 2739 16774 20133 20133 1 DLAALGDKVNSLGETAER Unmodified 1857.9432 0.94321999 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS By matching 6.25 0.829 1 1 2 3 1 62.788 63.122 3 8.0717E-12 20695 20211116_3435_TMUAki_TMT10x_P_F7 123.19 102.8 18644000 32896000 224080 31185000 31317000 50065000 29654000 30930000 27592000 27889000 28178000 17360000 30689000 1826300 32217000 29993000 49408000 30103000 32322000 28181000 27364000 27164000 4 4 2 4 4 4 4 4 4 4 4 18644000 32896000 224080 31185000 31317000 50065000 29654000 30930000 27592000 27889000 28178000 17360000 30689000 1826300 32217000 29993000 49408000 30103000 32322000 28181000 27364000 27164000 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3093100000 2677800000 415390000 2925 1663 2740 16775;16776;16777;16778 20134;20135;20136;20137 20137 4 DLADELALVDVIEDK Unmodified 1656.8458 0.84579735 462 P00338;P00338-3;P00338-4;P00338-2;P00338-5 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 0 By MS/MS By MS/MS 1.9 0.823 16 24 5 3 22 26 56.936 56.884 2;3 4.8852E-72 26744 20211116_3428_TMUAki_TMT10x_P_F1 322.7 285.2 210850000 330460000 3517700 433070000 128980000 196580000 184680000 86027000 95074000 112310000 198890000 196330000 308730000 14749000 431020000 125140000 212370000 181640000 93833000 104330000 108610000 188650000 52 52 29 52 51 52 51 51 52 52 52 103420000 155790000 493440 221390000 36133000 119380000 64382000 38418000 43143000 52283000 92131000 96284000 145610000 3872000 219700000 35285000 126080000 63171000 43561000 46559000 50491000 87359000 20 20 9 20 19 20 19 19 20 20 20 107430000 174670000 3024300 211680000 92847000 77207000 120290000 47610000 51930000 60031000 106760000 100050000 163120000 10877000 211320000 89857000 86282000 118470000 50272000 57767000 58118000 101290000 32 32 20 32 32 32 32 32 32 32 32 80158000000 46411000000 33747000000 2926 462 2741 16779;16780;16781;16782;16783;16784;16785;16786;16787;16788;16789;16790;16791;16792;16793;16794;16795;16796;16797;16798;16799;16800;16801;16802;16803;16804;16805;16806;16807;16808;16809;16810;16811;16812;16813;16814;16815;16816;16817;16818;16819;16820;16821;16822;16823;16824;16825;16826 20138;20139;20140;20141;20142;20143;20144;20145;20146;20147;20148;20149;20150;20151;20152;20153;20154;20155;20156;20157;20158;20159;20160;20161;20162;20163;20164;20165;20166;20167;20168;20169;20170;20171;20172;20173;20174;20175;20176;20177;20178;20179;20180;20181;20182;20183;20184;20185;20186;20187;20188;20189;20190;20191;20192;20193;20194;20195;20196 20138 59 DLADELALVDVIEDKLK Unmodified 1898.0248 0.024824352 462 P00338;P00338-3;P00338-4;P00338-2;P00338-5 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 1 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 81.599 81.593 3 1.9088E-37 28381 20211116_3429_TMUAki_TMT10x_P_F2 218.43 200.94 10622000 18052000 19725 14663000 10069000 17217000 12693000 8329000 8317500 9742800 12134000 9889000 16831000 791370 15237000 9714900 17182000 12602000 8959200 8788500 9457100 11587000 4 4 2 4 4 4 4 4 4 4 4 8860000 14755000 19725 11930000 8300400 15159000 10153000 6832700 6914400 8130300 9987100 8249000 13757000 667120 12418000 8001500 15057000 10102000 7406100 7285000 7887000 9539100 3 3 2 3 3 3 3 3 3 3 3 1761600 3296500 0 2733700 1768200 2057500 2539500 1496300 1403100 1612500 2147000 1640000 3073800 124240 2818500 1713400 2125100 2500400 1553100 1503500 1570100 2048100 1 1 0 1 1 1 1 1 1 1 1 1153900000 737160000 416700000 2927 462 2742 16827;16828;16829 20197;20198;20199;20200 20198 4 DLAEDAPWKK Unmodified 1171.5873 0.58733824 755;1703;328 P21333;P21333-2;Q14315;Q14315-2;O75369;O75369-8;O75369-6;O75369-3;O75369-2;O75369-9;O75369-5;O75369-4 FLNA;FLNC;FLNB Filamin-A;Filamin-C;Filamin-B no no 0 0 0 1 By MS/MS 5 0 1 1 50.118 50.309 3 0.0021098 14767 20211116_3433_TMUAki_TMT10x_P_F5 68.536 49.221 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2928 755;1703;328 2743 16830 20201 20201 1 DLAGCIHGLSNVK Unmodified 1382.6976 0.69763375 1083 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 6.8 0.748 2 2 1 2 3 49.272 49.548 3 1.1221E-09 15746 20211116_3446_TMUAki_TMT10x_S_F7 135.58 102.35 40280000 66244000 499380 73579000 56614000 63677000 39640000 52640000 47876000 47550000 54592000 37507000 61840000 3870500 74397000 53877000 65233000 41351000 53925000 48584000 46649000 52455000 8 8 6 8 8 8 8 8 8 8 8 19454000 30300000 147680 33936000 39306000 46105000 24025000 24750000 21975000 22243000 25637000 18114000 28287000 1947900 34546000 37308000 45738000 25105000 26166000 22576000 21827000 24617000 4 4 3 4 4 4 4 4 4 4 4 20826000 35944000 351700 39643000 17309000 17572000 15615000 27890000 25901000 25307000 28956000 19393000 33553000 1922600 39851000 16570000 19495000 16246000 27759000 26008000 24822000 27838000 4 4 3 4 4 4 4 4 4 4 4 2496700000 1568500000 928170000 2929 1083 2744 16831;16832;16833;16834;16835 20202;20203;20204;20205;20206;20207;20208;20209;20210 20208 9 DLAGSIIGK Unmodified 872.49673 0.49673232 1329;1330 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 0 By MS/MS By MS/MS 6 1.1 1 2 4 2 1 6 4 55.163 55.416 2;3 6.1567E-06 15704 20211116_3444_TMUAki_TMT10x_S_F5 164.57 42.947 93898000 141730000 912460 168240000 178420000 166370000 103830000 143690000 136860000 115880000 136670000 87435000 132350000 9752100 169730000 169250000 169090000 110240000 146410000 137770000 114320000 131840000 11 11 10 11 11 11 11 11 11 11 11 53228000 77413000 339820 93151000 141620000 129150000 63196000 77757000 83348000 65801000 76070000 49563000 72294000 5900900 94456000 133840000 128190000 68827000 81293000 83652000 64758000 73607000 7 7 6 7 7 7 7 7 7 7 7 40670000 64321000 572640 75088000 36797000 37218000 40637000 65936000 53507000 50082000 60595000 37872000 60059000 3851300 75275000 35414000 40897000 41417000 65115000 54122000 49566000 58234000 4 4 4 4 4 4 4 4 4 4 4 10935000000 6218100000 4716600000 2930 1329;1330 2745 16836;16837;16838;16839;16840;16841;16842;16843;16844;16845 20211;20212;20213;20214;20215;20216;20217;20218;20219;20220;20221;20222;20223 20219 13 DLAHTPSQLEGLDPATEAR Unmodified 2019.9861 0.98614743 366 O75909;O75909-1;O75909-2;O75909-4 CCNK Cyclin-K yes no 0 0 0 0 By MS/MS 3 0 1 1 50.853 50.753 3 7.736E-11 16337 20211116_3430_TMUAki_TMT10x_P_F3 118.66 99.27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2931 366 2746 16846 20224 20224 1 DLAILQCHGELDPMVPVR Oxidation (M) 2078.0289 0.028880648 424 O95372 LYPLA2 Acyl-protein thioesterase 2 yes yes 0 0 1 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 61.105 61.154 3 2.0892E-06 19415 20211116_3442_TMUAki_TMT10x_S_F4 97.284 76.916 22167000 36416000 323140 33071000 26813000 41491000 26008000 30595000 28686000 28136000 29488000 20642000 33967000 2124700 34100000 25704000 41504000 26506000 31583000 29094000 27580000 28421000 9 9 5 9 9 9 9 9 9 9 9 14871000 23900000 245240 22968000 18581000 33437000 18963000 20333000 18772000 18505000 19325000 13848000 22298000 1469100 23653000 17838000 33124000 19209000 21280000 19125000 18149000 18625000 6 6 3 6 6 6 6 6 6 6 6 7295900 12515000 77898 10104000 8232500 8053000 7045100 10262000 9914000 9630200 10163000 6793500 11669000 655600 10447000 7866300 8380000 7297100 10303000 9969100 9431300 9796300 3 3 2 3 3 3 3 3 3 3 3 3708800000 2099000000 1609800000 2932 424 2747 16847;16848;16849;16850;16851;16852 20225;20226;20227;20228;20229;20230;20231;20232;20233 20231 316 9 DLAILQCHGELDPMVPVR Unmodified 2062.034 0.033966025 424 O95372 LYPLA2 Acyl-protein thioesterase 2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.6 1.2 1 2 2 1 4 67.426 67.38 3 2.0411E-05 21040 20211116_3445_TMUAki_TMT10x_S_F6 81.723 64.645 7158600 12252000 25917 12405000 9299500 12212000 9300900 8852200 7518000 8716000 9828800 6665000 11433000 576370 12641000 8913800 12377000 9379100 9165800 7808300 8518100 9410000 3 3 2 3 3 3 3 3 3 3 3 4904400 8155500 17719 7984700 6203200 9712400 6436100 6272300 5175500 5818800 6445800 4566100 7609400 370050 8183600 5950200 9710500 6477200 6537300 5365400 5701700 6178700 2 2 1 2 2 2 2 2 2 2 2 2254100 4096800 8197.7 4420000 3096400 2499800 2864800 2579900 2342500 2897200 3383000 2098900 3823900 206320 4457500 2963600 2666900 2901800 2628500 2442900 2816500 3231200 1 1 1 1 1 1 1 1 1 1 1 1023200000 494980000 528260000 2933 424 2747 16853;16854;16855;16856;16857 20234;20235;20236;20237;20238;20239 20239 6 DLALVNDQLLGFVR Unmodified 1571.8671 0.86714192 1875 Q29RF7;Q29RF7-3 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 79.277 79.317 2 3.4278E-33 27957 20211116_3446_TMUAki_TMT10x_S_F7 231.7 181.66 5882700 10549000 0 9290400 7281700 9500800 7535300 6402300 6135600 6564200 7915800 5476000 9838700 338920 9569800 6977500 9596200 7586800 6670700 6366300 6404300 7581000 2 2 0 2 2 2 2 2 2 2 2 2746400 4891300 0 4400200 2859300 5563000 3516500 3259900 3105700 3369700 3712400 2556700 4562300 163460 4541000 2753900 5543700 3519900 3433900 3199000 3286500 3562400 1 1 0 1 1 1 1 1 1 1 1 3136200 5657700 0 4890200 4422400 3937900 4018700 3142500 3029900 3194400 4203400 2919300 5276400 175460 5028800 4223600 4052500 4066900 3236800 3167300 3117700 4018600 1 1 0 1 1 1 1 1 1 1 1 1811200000 569580000 1241600000 2934 1875 2748 16858;16859 20240;20241 20241 2 DLANIAEVEVSIPAK Unmodified 1567.8457 0.84573777 1467 Q00341;Q00341-2 HDLBP Vigilin yes no 0 0 0 0 By MS/MS 5 0 1 1 74.52 74.531 3 0.009156 23581 20211116_3444_TMUAki_TMT10x_S_F5 57.52 33.915 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2935 1467 2749 16860 20242 20242 1 DLANLEVPHELPTK Unmodified 1574.8304 0.83042206 2325 Q8WXI9 GATAD2B Transcriptional repressor p66-beta yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 2 2 57.649 57.81 3 0.013263 16764 20211116_3444_TMUAki_TMT10x_S_F5 52.026 27.644 7633200 12360000 110110 14374000 11102000 13342000 7638800 11631000 11324000 10895000 10673000 7107500 11541000 700260 14506000 10559000 13617000 8043500 11890000 11335000 10671000 10316000 2 2 1 2 2 2 2 2 2 2 2 4616700 7072500 0 8358900 8256900 10671000 5510800 6937200 6530000 6174900 6285200 4297900 6604200 349950 8471200 7842600 10644000 5764900 7218900 6589900 6062100 6070700 1 1 0 1 1 1 1 1 1 1 1 3016500 5287300 110110 6015300 2845200 2670800 2128000 4694100 4793500 4720300 4387300 2809500 4936300 350310 6035100 2716700 2972600 2278600 4671300 4745500 4609000 4244900 1 1 1 1 1 1 1 1 1 1 1 684910000 517570000 167350000 2936 2325 2750 16861;16862;16863;16864 20243;20244;20245;20246 20246 4 DLAPIGIR Unmodified 853.50215 0.50215205 2598 Q99714 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 47.622 47.669 2 0.00078326 13778 20211116_3442_TMUAki_TMT10x_S_F4 134.06 32.366 19314000 30714000 58369 33178000 33201000 32854000 22588000 27277000 26261000 23741000 27940000 17982000 28669000 1663900 33668000 31559000 33364000 23580000 27909000 26615000 23333000 26901000 6 6 1 6 6 6 6 6 6 6 6 11513000 17898000 58369 19544000 24531000 24970000 14663000 15898000 14991000 14009000 16937000 10719000 16707000 1062600 19903000 23268000 24899000 15399000 16565000 15305000 13760000 16278000 3 3 1 3 3 3 3 3 3 3 3 7800300 12817000 0 13634000 8669900 7884200 7925100 11380000 11271000 9732200 11003000 7262400 11962000 601340 13765000 8290600 8465200 8181200 11344000 11310000 9572800 10623000 3 3 0 3 3 3 3 3 3 3 3 2408400000 1452700000 955740000 2937 2598 2751 16865;16866;16867;16868;16869;16870 20247;20248;20249;20250;20251;20252 20251 6 DLAPYLPSVTPGLK Unmodified 1469.813 0.81298108 2350 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 0 By MS/MS By MS/MS 7.75 0.433 1 3 3 1 74.688 74.632 3 2.6429E-09 23627 20211116_3447_TMUAki_TMT10x_S_F8 125.53 109.3 11452000 20067000 277920 19394000 13858000 19046000 14488000 12822000 12067000 12356000 14204000 10665000 18722000 1224800 19827000 13319000 19285000 14588000 13337000 12458000 12087000 13636000 4 4 3 4 4 4 4 4 4 4 4 7065100 12375000 251020 12109000 8252800 14227000 9498700 7800200 7494000 7551700 8281300 6580200 11546000 836320 12403000 7959700 14219000 9507700 8247600 7739500 7385700 7964300 2 2 2 2 2 2 2 2 2 2 2 4387200 7691800 26902 7284800 5604900 4819000 4989700 5022000 4573400 4804600 5922700 4084900 7175700 388470 7423600 5359300 5065900 5080500 5089200 4718700 4701400 5671600 2 2 1 2 2 2 2 2 2 2 2 1235000000 501880000 733120000 2938 2350 2752 16871;16872;16873;16874 20253;20254;20255;20256;20257;20258 20257 6 DLASVSLKNPVR Unmodified 1297.7354 0.73539946 2476 Q96GQ7 DDX27 Probable ATP-dependent RNA helicase DDX27 yes yes 0 0 0 1 By MS/MS 1 0 1 1 46.688 46.688 3 0.076427 12680 20211116_3428_TMUAki_TMT10x_P_F1 43.717 19.687 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2939 2476 2753 16875 20259 20259 1 DLATALEQLLQAYPR Unmodified 1700.9097 0.90973501 1250 P55957;P55957-2;P55957-4 BID BH3-interacting domain death agonist;BH3-interacting domain death agonist p15;BH3-interacting domain death agonist p13;BH3-interacting domain death agonist p11 yes no 0 0 0 0 By MS/MS By MS/MS 5 3 1 1 1 1 82.861 82.859 3 5.7684E-24 27629 20211116_3440_TMUAki_TMT10x_S_F2 185.95 130.13 624620 1026600 7365.4 962840 711140 934430 788160 661480 732520 800700 827700 581640 957660 59861 986330 684250 947550 793710 690490 751030 776270 795500 2 2 2 2 2 2 2 2 2 2 2 119530 216710 7019.9 201720 155460 375390 179810 163760 186310 201550 176220 111350 202160 16956 209450 150100 366950 181320 178310 188900 195280 170310 1 1 1 1 1 1 1 1 1 1 1 505090 809860 345.45 761110 555670 559040 608340 497720 546210 599150 651480 470290 755500 42906 776880 534150 580600 612390 512180 562130 580980 625200 1 1 1 1 1 1 1 1 1 1 1 200820000 42529000 158290000 2940 1250 2754 16876;16877 20260;20261 20261 2 DLATVAFCDAQSTQEIHEK Unmodified 2161.995 0.99499756 1259 P56545;P56545-2;P56545-3 CTBP2 C-terminal-binding protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.2 0.4 4 1 3 2 58.557 58.322 3;4 5.5262E-41 19478 20211116_3430_TMUAki_TMT10x_P_F3 208.2 196.22 11418000 18366000 65291 18189000 14600000 21934000 13815000 14060000 12237000 12325000 15209000 10631000 17137000 1014600 18624000 13981000 21937000 14006000 14640000 12624000 12109000 14579000 5 5 3 5 5 5 5 5 5 5 5 9953300 15734000 43680 15799000 12756000 20260000 12378000 12118000 10366000 10589000 13093000 9267600 14681000 867750 16180000 12221000 20181000 12513000 12686000 10730000 10404000 12546000 4 4 2 4 4 4 4 4 4 4 4 1464500 2632900 21610 2389700 1844800 1673800 1437700 1941400 1871500 1736800 2115800 1363700 2455900 146880 2444400 1760000 1755400 1493000 1954200 1893600 1704700 2033500 1 1 1 1 1 1 1 1 1 1 1 2408600000 1602500000 806080000 2941 1259 2755 16878;16879;16880;16881;16882 20262;20263;20264;20265;20266 20264 5 DLCQAHGLPLDGEER Unmodified 1708.7839 0.78388257 24 A6NKF1 SAC3D1 SAC3 domain-containing protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.75 0.433 1 3 2 2 39.791 39.744 3 0.00027295 13611 20211116_3441_TMUAki_TMT10x_S_F3 79.013 62.789 686980 1137500 14190 1375100 1214000 1096600 808720 1062500 1170600 882350 1130900 639730 1062300 74511 1381900 1154600 1133600 852710 1076600 1173600 869170 1092100 4 4 3 4 4 4 4 4 4 4 4 299790 467860 3376.3 612730 873230 798440 448420 395290 438410 333220 482260 279130 437100 32981 617630 826620 792880 476760 420390 448000 328000 463860 3 3 2 3 3 3 3 3 3 3 3 387190 669650 10814 762400 340820 298170 360290 667210 732160 549120 648610 360600 625200 41530 764280 327940 340680 375960 656210 725610 541170 628270 1 1 1 1 1 1 1 1 1 1 1 94468000 15120000 79348000 2942 24 2756 16883;16884;16885;16886 20267;20268;20269;20270 20270 4 DLDADREVTFLEASR Unmodified 1735.8377 0.83769228 741 P20338 RAB4A Ras-related protein Rab-4A yes yes 0 0 0 1 By MS/MS 2 0 1 1 56.425 56.174 3 1.2572E-27 18107 20211116_3429_TMUAki_TMT10x_P_F2 170.48 149.23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2943 741 2757 16887 20271 20271 1 DLDAPDDVDFF Unmodified 1267.5245 0.52446322 2715 Q9BXP5;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3 SRRT Serrate RNA effector molecule homolog yes no 0 0 0 0 By MS/MS By MS/MS 1.7 0.64 4 5 1 2 8 59.03 59.003 2 7.4022E-07 26505 20211116_3428_TMUAki_TMT10x_P_F1 137.18 129.78 9000900 14917000 34329 14174000 9639400 12936000 11001000 9329600 9211300 10827000 11272000 8380800 13916000 766340 14494000 9277700 13173000 11032000 9712500 9522300 10513000 10810000 6 6 3 6 6 6 6 6 6 6 6 4709700 7508800 6399.5 7361600 4279800 8117500 5200400 4998300 4733700 5523300 5695100 4385200 7006000 387800 7531800 4127000 8152800 5212400 5255100 4870200 5372700 5464100 2 2 1 2 2 2 2 2 2 2 2 4291200 7408000 27929 6812100 5359600 4818200 5800500 4331300 4477600 5303800 5576500 3995600 6910200 378540 6961700 5150700 5020500 5819700 4457500 4652100 5139900 5345500 4 4 2 4 4 4 4 4 4 4 4 4534100000 2839000000 1695100000 2944 2715 2758 16888;16889;16890;16891;16892;16893;16894;16895;16896;16897 20272;20273;20274;20275;20276;20277;20278;20279;20280;20281 20272 10 DLDELSRYPEDK Unmodified 1478.6889 0.68890278 1026 P43243 MATR3 Matrin-3 yes yes 0 0 0 1 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 48.876 48.871 3 5.9314E-12 16621 20211116_3441_TMUAki_TMT10x_S_F3 130.24 102.59 27593000 38253000 462940 66466000 63456000 53432000 33302000 36909000 45515000 31350000 42046000 25695000 35800000 3209800 65619000 60113000 54866000 35734000 38194000 45646000 30847000 40668000 7 7 6 7 7 7 7 7 7 7 7 18291000 23874000 344200 42494000 57115000 47353000 26760000 24949000 30925000 20396000 27058000 17033000 22347000 2369400 42109000 54021000 47437000 28860000 26361000 31141000 20107000 26222000 5 5 4 5 5 5 5 5 5 5 5 9302000 14379000 118740 23972000 6340900 6079200 6541300 11959000 14590000 10954000 14988000 8662000 13453000 840390 23510000 6092200 7428900 6873800 11832000 14505000 10740000 14446000 2 2 2 2 2 2 2 2 2 2 2 2246200000 1740400000 505790000 2945 1026 2759 16898;16899;16900;16901;16902 20282;20283;20284;20285;20286;20287;20288;20289 20287 8 DLDELSRYPEDKITPENLPQILLQLK Unmodified 3079.6441 0.64413143 1026 P43243 MATR3 Matrin-3 yes yes 0 0 0 2 By MS/MS By MS/MS 5.73 2.38 2 1 2 4 2 6 5 79.577 79.585 4;5 3.6468E-24 25913 20211116_3445_TMUAki_TMT10x_S_F6 158.91 145.85 56504000 94230000 856030 75982000 87447000 86035000 79832000 69698000 61552000 67373000 72689000 52617000 87859000 5910100 78953000 83708000 86659000 80809000 71619000 63814000 65895000 69776000 6 6 5 6 6 6 6 6 6 6 6 17769000 29911000 411640 24839000 18958000 34893000 22957000 20789000 21383000 21391000 23142000 16547000 27891000 1873400 25849000 18303000 34609000 23029000 21867000 21885000 20867000 22270000 2 2 2 2 2 2 2 2 2 2 2 38735000 64319000 444390 51143000 68489000 51142000 56874000 48909000 40169000 45982000 49547000 36069000 59967000 4036700 53105000 65405000 52050000 57780000 49752000 41928000 45029000 47506000 4 4 3 4 4 4 4 4 4 4 4 18897000000 10698000000 8199100000 2946 1026 2760 16903;16904;16905;16906;16907;16908;16909;16910;16911;16912;16913 20290;20291;20292;20293;20294;20295 20293 6 DLDEMDDDDDDDDVGDHDDDHPGMEVVLHEDK 2 Oxidation (M) 3698.354 0.35404752 1757 Q15029;Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 2 0 By MS/MS By MS/MS 1 0 2 1 1 43.103 43.004 5 0.00066394 11164 20211116_3428_TMUAki_TMT10x_P_F1 57.144 57.132 1762700 2994800 0 3355200 2759600 3732400 1922900 2492700 4623500 2769800 2773300 1641000 2795800 133810 3403000 2623300 3751200 2077800 2605300 4519800 2693700 2732500 2 2 0 2 2 2 2 2 2 2 2 1174500 1864900 0 2155100 2404300 3227900 1518300 1426900 2522400 1656700 1613100 1093500 1741300 106780 2194100 2282600 3181700 1617500 1548500 2489900 1608500 1584200 1 1 0 1 1 1 1 1 1 1 1 588150 1129800 0 1200000 355250 504570 404530 1065800 2101100 1113100 1160200 547480 1054500 27024 1208900 340670 569530 460280 1056700 2029900 1085200 1148300 1 1 0 1 1 1 1 1 1 1 1 1691200000 1403300000 287860000 2947 1757 2761 16914;16915 20296;20297 20296 2369;2370 2 DLDEMDDDDDDDDVGDHDDDHPGMEVVLHEDKK 2 Oxidation (M) 3826.449 0.44901054 1757 Q15029;Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 2 1 By MS/MS By MS/MS 1 0 2 1 1 41.167 41.086 6 0.00053674 12423 20211116_3439_TMUAki_TMT10x_S_F1 57.543 53.215 1423700 2554400 14529 3350900 2530200 4287800 1871800 7812300 6516800 4296400 3641300 1325700 2386500 88037 3376200 2410300 4389500 2076900 7659900 6324400 4340900 3601700 5 5 3 5 5 5 5 5 5 5 5 488390 874340 0 1480400 1747000 3265600 1170200 3292600 2702700 1746800 1368000 454740 818120 0 1494100 1660600 3217200 1264600 3300000 2635100 1769700 1360900 1 1 0 1 1 1 1 1 1 1 1 935280 1680100 14529 1870500 783180 1022200 701570 4519700 3814100 2549600 2273400 870940 1568400 88037 1882100 749720 1172300 812260 4359800 3689300 2571200 2240700 4 4 3 4 4 4 4 4 4 4 4 418110000 266280000 151830000 2948 1757 2762 16916;16917 20298;20299;20300;20301;20302 20301 2369;2370 5 DLDEVLQTHSVFVNVSK Unmodified 1928.9844 0.98435652 3267 Q9Y3A5 SBDS Ribosome maturation protein SBDS yes yes 0 0 0 0 By MS/MS By MS/MS 6 0.707 1 2 1 2 2 69.818 69.9 3 1.1453E-21 21994 20211116_3445_TMUAki_TMT10x_S_F6 167.28 144.27 20866000 34710000 183920 32082000 23679000 34559000 24124000 25598000 23381000 23651000 27339000 19430000 32379000 1910300 32951000 22725000 34852000 24424000 26420000 23959000 23179000 26251000 7 7 6 7 7 7 7 7 7 7 7 13272000 21045000 47058 19357000 13687000 26442000 15009000 17460000 15661000 15427000 17856000 12357000 19631000 1119500 19973000 13157000 26299000 15175000 18144000 15981000 15151000 17157000 4 4 3 4 4 4 4 4 4 4 4 7594600 13666000 136860 12724000 9992200 8116700 9115200 8138200 7720700 8224200 9483400 7072400 12748000 790780 12978000 9567200 8553400 9248600 8275900 7978100 8028700 9093700 3 3 3 3 3 3 3 3 3 3 3 2978700000 1796800000 1181900000 2949 3267 2763 16918;16919;16920;16921 20303;20304;20305;20306;20307;20308;20309 20308 7 DLDIFDR Unmodified 892.42905 0.42904669 1687 Q14165 MLEC Malectin yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 59.678 59.376 2 0.0026274 20967 20211116_3441_TMUAki_TMT10x_S_F3 123.69 63.331 8045100 13035000 56872 14411000 9972800 11009000 8433200 9840800 10265000 9674100 11149000 7491000 12169000 713880 14554000 9525000 11398000 8691300 10059000 10394000 9455100 10728000 3 3 1 3 3 3 3 3 3 3 3 2819000 4214500 0 4603900 4693700 6025300 3700600 3302100 3353100 3264100 3874400 2624600 3934100 240510 4690500 4474300 5989300 3794800 3493700 3445000 3189500 3721300 1 1 0 1 1 1 1 1 1 1 1 5226100 8820800 56872 9807100 5279100 4983200 4732600 6538700 6911800 6410000 7274800 4866300 8234400 473380 9863000 5050700 5409100 4896500 6565800 6949100 6265600 7006500 2 2 1 2 2 2 2 2 2 2 2 516290000 197210000 319080000 2950 1687 2764 16922;16923;16924 20310;20311;20312 20312 3 DLDLDAFAEELER Unmodified 1534.7151 0.71511753 2047 Q7KZ85 SUPT6H Transcription elongation factor SPT6 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 79.39 79.372 2 3.1344E-11 26053 20211116_3428_TMUAki_TMT10x_P_F1 143 128.76 7548800 11929000 41837 12204000 7689900 8941300 8742600 4978400 5559400 6182400 8190200 7028400 11132000 598970 12382000 7398000 9221000 8714400 5297700 5888400 5988500 7819400 2 2 1 2 2 2 2 2 2 2 2 4140500 5981200 0 6156700 3572600 5496200 4327700 2690300 2868700 3375200 4402900 3854700 5581700 267480 6258500 3440100 5576800 4305100 2897400 3036700 3268200 4199900 1 1 0 1 1 1 1 1 1 1 1 3408200 5948100 41837 6047100 4117300 3445100 4414900 2288100 2690600 2807200 3787300 3173700 5550600 331490 6123100 3957900 3644100 4409300 2400300 2851600 2720300 3619500 1 1 1 1 1 1 1 1 1 1 1 1109700000 620840000 488860000 2951 2047 2765 16925;16926 20313;20314 20313 2 DLDLKKPIYQR Unmodified 1387.7823 0.78234966 885 P31153 MAT2A S-adenosylmethionine synthase isoform type-2 yes yes 0 0 0 2 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 44.007 44.209 4 0.00030365 11733 20211116_3436_TMUAki_TMT10x_P_F8 92.781 72.675 14679000 22975000 107830 24837000 43471000 36301000 20617000 24662000 27747000 20013000 23556000 13668000 21445000 1719700 25378000 41114000 36012000 22329000 25523000 27767000 19737000 22854000 5 5 4 5 5 5 5 5 5 5 5 11555000 18318000 73122 19742000 40267000 33448000 17769000 19220000 21704000 15851000 18203000 10759000 17098000 1427300 20245000 38049000 32910000 19323000 20159000 21784000 15620000 17668000 4 4 3 4 4 4 4 4 4 4 4 3123700 4657300 34705 5094800 3203100 2852500 2847700 5441900 6042700 4161600 5353300 2908800 4347400 292430 5133200 3064400 3102500 3006000 5363900 5983100 4117200 5185500 1 1 1 1 1 1 1 1 1 1 1 658290000 519780000 138510000 2952 885 2766 16927;16928;16929 20315;20316;20317;20318;20319 20317 5 DLDPEVFQR Unmodified 1117.5404 0.54038805 1939 Q5T4S7;Q5T4S7-3;Q5T4S7-4;Q5T4S7-2 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 0 0 By MS/MS 3 0 1 1 52.062 51.694 2 0.022668 17827 20211116_3441_TMUAki_TMT10x_S_F3 65.88 44.933 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2953 1939 2767 16930 20320 20320 1 DLDQASLAAVSQQLAPR Unmodified 1781.9272 0.92717599 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 68.948 68.945 3 8.2139E-17 21272 20211116_3444_TMUAki_TMT10x_S_F5 159.81 138.56 10683000 17619000 102050 16836000 12210000 19043000 13474000 13418000 11870000 12782000 14182000 9947600 16438000 992160 17264000 11745000 19137000 13551000 13907000 12228000 12510000 13609000 6 6 4 6 6 6 6 6 6 6 6 7490200 12180000 13948 11584000 8047300 15772000 9777300 9364000 8305400 8992000 9790900 6974100 11363000 631760 11923000 7759800 15665000 9781500 9833000 8566400 8797400 9398900 4 4 2 4 4 4 4 4 4 4 4 3192800 5439500 88106 5251400 4163000 3270900 3696200 4054000 3564500 3790100 4390900 2973400 5074900 360400 5341000 3985300 3472000 3769600 4074400 3661300 3712500 4210100 2 2 2 2 2 2 2 2 2 2 2 2428300000 1305300000 1123000000 2954 3293 2768 16931;16932;16933;16934 20321;20322;20323;20324;20325;20326 20325 6 DLDVSIK Unmodified 788.42798 0.42798405 241 O43747;O43747-2 AP1G1 AP-1 complex subunit gamma-1 yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 49.475 49.515 2 0.0096673 14635 20211116_3442_TMUAki_TMT10x_S_F4 98.997 17.213 7371700 12268000 62019 13595000 7155300 7426400 6557400 9798600 10066000 9549500 9790600 6864300 11452000 665940 13683000 6849600 7999300 6791300 9835400 10077000 9336800 9453200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7371700 12268000 62019 13595000 7155300 7426400 6557400 9798600 10066000 9549500 9790600 6864300 11452000 665940 13683000 6849600 7999300 6791300 9835400 10077000 9336800 9453200 1 1 1 1 1 1 1 1 1 1 1 132910000 44795000 88112000 2955 241 2769 16935;16936;16937 20327;20328 20328 2 DLEAEHVEVEDTTLNR Unmodified 1868.8752 0.8752 2798 Q9H3K6;Q9H3K6-2 BOLA2 BolA-like protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 2.33 1.15 3 2 2 2 4 5 43.21 43.135 2;3 8.3882E-47 13383 20211116_3439_TMUAki_TMT10x_S_F1 222.94 197.46 5868900 9578800 78276 12606000 9581300 8947500 5772000 8745800 8972200 6935700 8999800 5464800 8949300 552310 12592000 9093700 9336300 6153100 8848200 8988600 6848300 8680900 10 10 4 10 10 10 10 10 10 10 10 2268500 3656200 55480 4770600 6887400 6510100 3402600 3183500 3545000 2738000 3499600 2112600 3415800 301060 4814100 6519500 6450000 3638000 3391300 3598600 2692500 3377400 4 4 2 4 4 4 4 4 4 4 4 3600400 5922600 22796 7835600 2693900 2437400 2369400 5562300 5427300 4197600 5500100 3352300 5533600 251240 7777700 2574200 2886300 2515100 5456800 5390100 4155800 5303500 6 6 2 6 6 6 6 6 6 6 6 9639200000 7007500000 2631700000 2956 2798 2770 16938;16939;16940;16941;16942;16943;16944;16945;16946 20329;20330;20331;20332;20333;20334;20335;20336;20337;20338;20339;20340 20337 12 DLEASIAR Unmodified 873.4556 0.45559579 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.4 1.02 1 2 1 1 1 4 37.386 37.31 2 0.00041909 10613 20211116_3429_TMUAki_TMT10x_P_F2 143.89 32.851 3191100 5157200 20633 5394500 3909000 3890900 3619200 3613400 3580400 3393800 4366000 2971400 4813100 288590 5464100 3741800 4050300 3685100 3681300 3672000 3323600 4187400 5 5 3 5 5 5 5 5 5 5 5 986150 1465700 3687.6 1588200 1787600 1884700 1263100 1137300 1177300 1021800 1334100 918230 1368100 96421 1616000 1701100 1884900 1305900 1190600 1207000 1002700 1282100 1 1 1 1 1 1 1 1 1 1 1 2205000 3691500 16945 3806400 2121400 2006200 2356200 2476100 2403100 2372000 3031800 2053200 3445000 192170 3848100 2040600 2165400 2379100 2490700 2465000 2320900 2905200 4 4 2 4 4 4 4 4 4 4 4 170740000 82437000 88304000 2957 1695 2771 16947;16948;16949;16950;16951 20341;20342;20343;20344;20345 20341 5 DLECVTNLQEVAR Unmodified 1545.7457 0.74570615 609 P10619;P10619-2 CTSA Lysosomal protective protein;Lysosomal protective protein 32 kDa chain;Lysosomal protective protein 20 kDa chain yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 56.353 56.221 2 7.3394E-29 17380 20211116_3442_TMUAki_TMT10x_S_F4 221.6 168.88 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2958 609 2772 16952;16953 20346;20347 20347 2 DLEDLFYK Unmodified 1041.5019 0.50187728 1611 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 1.12 2 2 2 2 4 4 75.874 75.82 2 0.00041033 26597 20211116_3430_TMUAki_TMT10x_P_F3 141.47 91.653 83151000 123300000 693410 147720000 81843000 90093000 81906000 54201000 62330000 62082000 85742000 77426000 115140000 7418800 148110000 78512000 94529000 82472000 57155000 65097000 60308000 81987000 10 10 8 10 10 10 10 10 10 10 10 50274000 72738000 265160 86758000 46069000 64144000 46789000 32355000 37663000 36889000 50323000 46811000 67925000 4253400 87179000 44201000 66027000 47140000 34636000 39165000 35841000 48153000 5 5 3 5 5 5 5 5 5 5 5 32877000 50563000 428250 60961000 35774000 25949000 35117000 21847000 24667000 25193000 35419000 30615000 47220000 3165400 60932000 34311000 28502000 35331000 22519000 25933000 24467000 33834000 5 5 5 5 5 5 5 5 5 5 5 3660200000 2233200000 1427000000 2959 1611 2773 16954;16955;16956;16957;16958;16959;16960;16961 20348;20349;20350;20351;20352;20353;20354;20355;20356;20357;20358 20349 11 DLEEAEEYKEAR Unmodified 1480.6682 0.66816734 323 O75347 TBCA Tubulin-specific chaperone A yes yes 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 43.199 43.217 3 9.5502E-08 11348 20211116_3428_TMUAki_TMT10x_P_F1 107.99 77.166 1112600 1800200 0 2018300 934700 872140 918750 1799200 1922100 1379800 1832400 1035900 1680600 83381 2026400 895420 980010 963820 1770000 1908300 1364800 1770400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1112600 1800200 0 2018300 934700 872140 918750 1799200 1922100 1379800 1832400 1035900 1680600 83381 2026400 895420 980010 963820 1770000 1908300 1364800 1770400 1 1 0 1 1 1 1 1 1 1 1 57091000 0 57091000 2960 323 2774 16962;16963 20359;20360 20359 2 DLEEAEGR Unmodified 917.40904 0.40903953 1229 P54886;P54886-2 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes no 0 0 0 0 By MS/MS 1 0 1 1 31.294 31.343 2 0.0061578 8492 20211116_3439_TMUAki_TMT10x_S_F1 93.143 30.679 234990 413770 769.4 383350 271850 218830 277640 250300 275420 236710 371360 218800 385980 20715 390770 260850 233790 281250 252490 283690 231740 355270 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 234990 413770 769.4 383350 271850 218830 277640 250300 275420 236710 371360 218800 385980 20715 390770 260850 233790 281250 252490 283690 231740 355270 1 1 1 1 1 1 1 1 1 1 1 6659500 0 6659500 2961 1229 2775 16964 20361 20361 1 DLEEAGGLGTEFSELPGK Unmodified 1847.8789 0.8788884 1080 P48681 NES Nestin yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 72.738 72.59 3 1.6649E-23 24733 20211116_3429_TMUAki_TMT10x_P_F2 160.81 143.87 22283000 37515000 412640 37524000 23168000 31270000 25151000 19427000 17868000 19997000 26733000 20751000 35005000 2216200 38187000 22288000 31976000 25183000 20367000 18811000 19506000 25514000 6 6 5 6 6 6 6 6 6 6 6 11821000 19009000 223150 19427000 11059000 20649000 13544000 9770600 9201400 10436000 13366000 11008000 17739000 1177300 19807000 10680000 20716000 13474000 10503000 9698700 10165000 12764000 3 3 3 3 3 3 3 3 3 3 3 10462000 18506000 189490 18098000 12109000 10621000 11608000 9656300 8666900 9560500 13368000 9742300 17266000 1038800 18380000 11608000 11260000 11709000 9863700 9112600 9341300 12750000 3 3 2 3 3 3 3 3 3 3 3 2862200000 1302300000 1559900000 2962 1080 2776 16965;16966;16967;16968;16969;16970 20362;20363;20364;20365;20366;20367;20368 20362 7 DLEEDHACIPIK Unmodified 1438.6762 0.67622961 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 46.229 46.177 3 7.4169E-08 14407 20211116_3430_TMUAki_TMT10x_P_F3 136.02 115.07 21369000 32542000 293750 49368000 42426000 30193000 21058000 20628000 22309000 18387000 28577000 19899000 30428000 2323800 48888000 40160000 31726000 22516000 21389000 22863000 18050000 27373000 11 11 10 11 11 11 11 11 11 11 11 11708000 17040000 162100 26122000 35544000 24416000 14562000 11307000 12077000 9922700 15170000 10902000 15934000 1455600 25981000 33564000 24684000 15791000 12116000 12505000 9748100 14538000 6 6 6 6 6 6 6 6 6 6 6 9661600 15503000 131650 23246000 6881900 5776800 6496100 9321200 10232000 8463900 13407000 8996700 14494000 868270 22907000 6595900 7042200 6725100 9272600 10359000 8301600 12835000 5 5 4 5 5 5 5 5 5 5 5 2865600000 2003000000 862580000 2963 653 2777 16971;16972;16973;16974;16975;16976;16977;16978 20369;20370;20371;20372;20373;20374;20375;20376;20377;20378;20379;20380 20372 12 DLEEDHACIPIKK Unmodified 1566.7712 0.77119262 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 42.642 42.762 4 4.0668E-23 11733 20211116_3433_TMUAki_TMT10x_P_F5 211.77 158.52 25896000 39116000 277580 49876000 73239000 43795000 29099000 27055000 31227000 22728000 37542000 24113000 36539000 2939100 50031000 69124000 44615000 31890000 28223000 31899000 22375000 36020000 9 9 7 9 9 9 9 9 9 9 9 15510000 22588000 79770 28574000 64652000 36295000 20000000 15866000 18132000 13267000 21843000 14441000 21099000 1918900 28843000 60865000 36040000 22564000 17085000 18659000 13064000 20956000 4 4 2 4 4 4 4 4 4 4 4 10386000 16528000 197810 21302000 8587100 7500000 9099300 11189000 13095000 9461000 15699000 9671700 15440000 1020200 21188000 8258500 8574700 9326700 11138000 13239000 9311300 15064000 5 5 5 5 5 5 5 5 5 5 5 4768100000 3692700000 1075400000 2964 653 2778 16979;16980;16981;16982;16983;16984 20381;20382;20383;20384;20385;20386;20387;20388;20389 20383 9 DLEEFFSTVGK Unmodified 1270.6081 0.60813326 1711 Q14498;Q14498-2;Q14498-3 RBM39 RNA-binding protein 39 yes no 0 0 0 0 By MS/MS By MS/MS 4.32 1.52 1 1 4 4 4 4 1 11 8 74.613 74.6 2;3 4.8577E-12 25509 20211116_3445_TMUAki_TMT10x_S_F6 143.4 109.21 99975000 161440000 233160 151330000 114830000 156350000 116660000 114430000 114910000 122810000 127770000 93083000 150610000 7218200 155170000 110120000 158030000 118190000 118710000 117440000 119600000 122860000 15 15 6 15 15 15 15 15 15 15 15 53773000 82938000 92742 80926000 53637000 103360000 61605000 61163000 61936000 65132000 65992000 50066000 77382000 3445500 83036000 51617000 102970000 62082000 64435000 63138000 63448000 63534000 8 8 2 8 8 8 8 8 8 8 8 46202000 78504000 140420 70403000 61191000 52993000 55059000 53268000 52979000 57681000 61777000 43016000 73223000 3772700 72134000 58501000 55066000 56105000 54277000 54300000 56153000 59321000 7 7 4 7 7 7 7 7 7 7 7 13251000000 7314300000 5936500000 2965 1711 2779 16985;16986;16987;16988;16989;16990;16991;16992;16993;16994;16995;16996;16997;16998;16999;17000;17001;17002;17003 20390;20391;20392;20393;20394;20395;20396;20397;20398;20399;20400;20401;20402;20403;20404;20405;20406;20407 20407 18 DLEEKLETLR Unmodified 1244.6612 0.66123147 1694 Q14203;Q14203-6;Q14203-3;Q14203-4;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 57.404 57.543 3 6.8614E-05 17472 20211116_3431_TMUAki_TMT10x_P_F4 91.858 62.051 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2966 1694 2780 17004;17005 20408;20409 20408 2 DLEGENIEIVFAKPPDQK Unmodified 2041.0368 0.036786022 271;272 O60506;O60506-2;O60506-3;O60506-4;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 1 By MS/MS By MS/MS 3.18 1.11 4 3 2 2 4 7 68.142 67.917 3;4 1.0684E-23 22205 20211116_3442_TMUAki_TMT10x_S_F4 171.29 160.43 56333000 84003000 472860 106270000 50822000 57283000 53147000 37321000 40420000 43980000 57012000 52453000 78467000 4757700 106110000 48800000 60929000 53394000 39152000 42266000 42679000 54483000 11 11 6 11 11 11 11 11 11 11 11 27505000 38017000 243890 49142000 23961000 36409000 23942000 16600000 18909000 20258000 25515000 25609000 35515000 2220100 49157000 22974000 37431000 24130000 17987000 19692000 19634000 24409000 5 5 3 5 5 5 5 5 5 5 5 28828000 45986000 228970 57125000 26861000 20875000 29206000 20721000 21510000 23722000 31497000 26843000 42951000 2537600 56948000 25826000 23498000 29264000 21165000 22574000 23044000 30074000 6 6 3 6 6 6 6 6 6 6 6 5593700000 2430600000 3163100000 2967 271;272 2781 17006;17007;17008;17009;17010;17011;17012;17013;17014;17015;17016 20410;20411;20412;20413;20414;20415;20416;20417;20418;20419;20420;20421;20422;20423;20424 20422 15 DLEGLSQR Unmodified 916.46141 0.46140945 934 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 By MS/MS 2 0 1 1 35.621 35.72 2 0.06493 8466 20211116_3440_TMUAki_TMT10x_S_F2 55.676 24.387 212730 371920 1831.1 361140 225060 210590 259850 206750 215480 201240 293660 198080 347000 19516 366930 216780 223740 260380 210240 223930 196770 280870 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 212730 371920 1831.1 361140 225060 210590 259850 206750 215480 201240 293660 198080 347000 19516 366930 216780 223740 260380 210240 223930 196770 280870 1 1 1 1 1 1 1 1 1 1 1 9562500 0 9562500 2968 934 2782 17017 20425 20425 1 DLEGSDIDTR Unmodified 1119.5044 0.50439647 1234 P55060;P55060-3;P55060-4 CSE1L Exportin-2 yes no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 33.763 33.763 2 2.5739E-08 9988 20211116_3439_TMUAki_TMT10x_S_F1 166.77 112.61 1919800 3263900 16220 3359100 3433100 2821200 2152400 2014600 2311700 1905700 2697000 1787600 3045900 188770 3412000 3260200 2889100 2255200 2085800 2358400 1865700 2589800 5 5 2 5 5 5 5 5 5 5 5 1005100 1672300 4542.1 1658800 2458700 1996300 1210600 1041800 1158000 959180 1381100 935870 1560400 103670 1698200 2326200 1991500 1291600 1105000 1188300 940190 1325400 2 2 1 2 2 2 2 2 2 2 2 914710 1591600 11678 1700300 974340 824910 941770 972760 1153700 946500 1315900 851760 1485500 85091 1713800 934050 897680 963540 980790 1170200 925490 1264400 3 3 1 3 3 3 3 3 3 3 3 96236000 44741000 51495000 2969 1234 2783 17018;17019;17020 20426;20427;20428;20429;20430 20429 5 DLEIERPILGQNDNK Unmodified 1752.9006 0.90062689 3110 Q9UGV2;Q9UGV2-2;Q9UGV2-3 NDRG3 Protein NDRG3 yes no 0 0 0 1 By MS/MS 4 0 1 1 50.621 50.784 3 0.043426 14706 20211116_3431_TMUAki_TMT10x_P_F4 41.088 20.992 5592600 8918600 58450 12972000 20102000 15941000 8283300 8360500 9991800 7100800 9207900 5207700 8337200 721350 12992000 18981000 15886000 9073000 8845300 10062000 6987000 8906800 1 1 1 1 1 1 1 1 1 1 1 5592600 8918600 58450 12972000 20102000 15941000 8283300 8360500 9991800 7100800 9207900 5207700 8337200 721350 12992000 18981000 15886000 9073000 8845300 10062000 6987000 8906800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 433360000 433360000 0 2970 3110 2784 17021 20431 20431 1 DLEILHQQNIHQLQNR Unmodified 1998.0395 0.039520409 2020 Q6UVJ0 SASS6 Spindle assembly abnormal protein 6 homolog yes yes 0 0 0 0 By MS/MS 5 0 1 1 41.998 42.124 4 1.9952E-07 10386 20211116_3444_TMUAki_TMT10x_S_F5 109.48 96.645 734550 1188900 0 1343500 673100 575380 568590 1201500 1270800 1019700 1211300 683900 1109900 54365 1348200 642400 647610 603950 1184600 1260000 1003400 1170300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 734550 1188900 0 1343500 673100 575380 568590 1201500 1270800 1019700 1211300 683900 1109900 54365 1348200 642400 647610 603950 1184600 1260000 1003400 1170300 1 1 0 1 1 1 1 1 1 1 1 63690000 0 63690000 2971 2020 2785 17022 20432 20432 1 DLEKPFLLPVEAVYSVPGR Unmodified 2128.1568 0.15684158 1097 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 7.38 0.857 1 1 5 9 13 3 69.663 69.664 3 3.9362E-24 25636 20211116_3436_TMUAki_TMT10x_P_F8 174.2 142.02 146210000 254830000 456140 198300000 129540000 181880000 156370000 91185000 100680000 101320000 146490000 136140000 237570000 9940200 206050000 124900000 184260000 155490000 97591000 106480000 98538000 139890000 15 15 11 15 15 15 15 15 15 15 15 98825000 173650000 387730 136050000 64747000 117310000 87103000 64361000 72472000 71244000 98122000 92018000 161900000 5730000 141170000 62660000 119470000 86731000 68316000 75278000 69297000 93861000 13 13 10 13 13 13 13 13 13 13 13 47389000 81176000 68413 62250000 64797000 64569000 69266000 26825000 28205000 30077000 48364000 44124000 75676000 4210200 64877000 62245000 64787000 68755000 29276000 31206000 29241000 46031000 2 2 1 2 2 2 2 2 2 2 2 30021000000 15369000000 14652000000 2972 1097 2786 17023;17024;17025;17026;17027;17028;17029;17030;17031;17032;17033;17034;17035;17036;17037;17038 20433;20434;20435;20436;20437;20438;20439;20440;20441;20442;20443;20444;20445;20446;20447;20448;20449;20450;20451;20452 20445 20 DLENGSHIR Unmodified 1039.5047 0.50467125 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 27.799 27.516 3 0.0015161 6475 20211116_3429_TMUAki_TMT10x_P_F2 76.228 53.208 267530 457290 2064.9 421250 305680 283080 310090 241600 254770 253950 322800 249110 426560 24639 430230 293330 295980 312590 248110 264020 247510 309290 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 267530 457290 2064.9 421250 305680 283080 310090 241600 254770 253950 322800 249110 426560 24639 430230 293330 295980 312590 248110 264020 247510 309290 2 2 2 2 2 2 2 2 2 2 2 3245900 0 3245900 2973 799 2787 17039;17040 20453;20454;20455 20453 3 DLEQAISQR Unmodified 1058.5356 0.53563702 1509 Q04206;Q04206-3;Q04206-4;Q04206-2 RELA Transcription factor p65 yes no 0 0 0 0 By MS/MS 3 0 1 1 40.066 40.119 2 0.0097693 11955 20211116_3430_TMUAki_TMT10x_P_F3 70.363 35.555 291800 410750 0 533750 829680 597640 354400 296290 363240 275080 416420 271690 383730 31628 536780 783580 598120 384610 315820 371040 269530 400060 1 1 0 1 1 1 1 1 1 1 1 291800 410750 0 533750 829680 597640 354400 296290 363240 275080 416420 271690 383730 31628 536780 783580 598120 384610 315820 371040 269530 400060 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13302000 13302000 0 2974 1509 2788 17041 20456 20456 1 DLESLFHR Unmodified 1015.5087 0.50869399 1505 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 53.101 53.149 3 0.00028972 16147 20211116_3442_TMUAki_TMT10x_S_F4 134.15 91.281 612230 984630 0 1115000 583400 546500 521940 704410 770540 744060 865420 570030 919250 48786 1119700 557750 595350 540330 709410 776380 725050 831900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 612230 984630 0 1115000 583400 546500 521940 704410 770540 744060 865420 570030 919250 48786 1119700 557750 595350 540330 709410 776380 725050 831900 1 1 0 1 1 1 1 1 1 1 1 121950000 0 121950000 2975 1505 2789 17042;17043;17044 20457;20458;20459 20458 3 DLESLREYVESQLQR Unmodified 1863.9327 0.9326553 2227 Q8NBS9;Q8NBS9-2 TXNDC5 Thioredoxin domain-containing protein 5 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 78.028 78.042 3 3.9339E-14 25041 20211116_3444_TMUAki_TMT10x_S_F5 145.33 122.86 7035100 9836000 17241 9005900 7323700 8108900 7130400 6203400 5692900 6359500 8636600 6550500 9174900 603370 9232700 7018500 8273300 7198300 6408100 5958900 6204600 8240300 2 2 2 2 2 2 2 2 2 2 2 4118800 4851100 10240 4946500 2708100 4927900 3393700 3179800 2866700 3301800 5153100 3835100 4526900 331260 5039200 2614500 4982100 3390200 3324800 3020600 3219700 4900200 1 1 1 1 1 1 1 1 1 1 1 2916300 4984900 7001.3 4059400 4615600 3181000 3736700 3023700 2826200 3057700 3483500 2715500 4648000 272110 4193500 4404000 3291300 3808100 3083200 2938300 2984900 3340100 1 1 1 1 1 1 1 1 1 1 1 1053900000 555040000 498860000 2976 2227 2790 17045;17046 20460;20461 20461 2 DLFDFSTR Unmodified 999.46616 0.46616048 2682 Q9BV38 WDR18 WD repeat-containing protein 18 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 63.745 63.724 2 0.010471 20033 20211116_3431_TMUAki_TMT10x_P_F4 80.438 49.149 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2977 2682 2791 17047;17048 20462;20463 20462 2 DLFDPIIEDR Unmodified 1231.6085 0.60846762 642 P12277 CKB Creatine kinase B-type yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 70.524 70.355 2 7.7908E-14 22263 20211116_3428_TMUAki_TMT10x_P_F1 219.8 174.12 84704000 126910000 92816 144100000 79813000 86929000 83920000 45460000 48425000 56200000 81349000 78861000 118490000 6089800 144940000 76575000 91152000 83810000 48635000 51985000 54446000 77455000 10 10 3 10 10 10 10 10 10 10 10 41608000 61040000 37854 67698000 37955000 58655000 40956000 24567000 24946000 28856000 40972000 38740000 56981000 3236800 68458000 36458000 59546000 40891000 26826000 26647000 28006000 39028000 6 6 2 6 6 6 6 6 6 6 6 43097000 65873000 54962 76400000 41858000 28274000 42964000 20894000 23479000 27344000 40377000 40122000 61506000 2853000 76478000 40118000 31606000 42919000 21809000 25338000 26440000 38427000 4 4 1 4 4 4 4 4 4 4 4 18144000000 9862600000 8281800000 2978 642 2792 17049;17050;17051;17052;17053;17054;17055;17056 20464;20465;20466;20467;20468;20469;20470;20471;20472;20473;20474 20465 11 DLFEDELVPLFEK Unmodified 1592.7974 0.7973906 271;272 O60506;O60506-2;O60506-3;O60506-4;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 0 By MS/MS By MS/MS 2.36 1.29 13 16 8 4 3 1 15 30 63.776 63.741 2;3 8.2495E-23 26664 20211116_3428_TMUAki_TMT10x_P_F1 212.89 146.46 324420000 506820000 1549400 471190000 358370000 468150000 389070000 324100000 318410000 346580000 379980000 302040000 472780000 24194000 483160000 344190000 473870000 390860000 337470000 329200000 337560000 364650000 45 45 21 46 44 45 45 46 45 45 45 169600000 254000000 57966 234400000 151070000 296460000 184310000 172450000 164450000 178930000 186090000 157900000 236940000 11123000 241440000 145510000 295400000 184600000 181790000 168930000 174490000 178840000 15 15 3 16 14 15 15 16 15 15 15 154820000 252810000 1491400 236790000 207300000 171690000 204770000 151660000 153960000 167650000 193890000 144150000 235840000 13070000 241720000 198670000 178470000 206270000 155680000 160270000 163070000 185810000 30 30 18 30 30 30 30 30 30 30 30 61005000000 37678000000 23327000000 2979 271;272 2793 17057;17058;17059;17060;17061;17062;17063;17064;17065;17066;17067;17068;17069;17070;17071;17072;17073;17074;17075;17076;17077;17078;17079;17080;17081;17082;17083;17084;17085;17086;17087;17088;17089;17090;17091;17092;17093;17094;17095;17096;17097;17098;17099;17100;17101 20475;20476;20477;20478;20479;20480;20481;20482;20483;20484;20485;20486;20487;20488;20489;20490;20491;20492;20493;20494;20495;20496;20497;20498;20499;20500;20501;20502;20503;20504;20505;20506;20507;20508;20509;20510;20511;20512;20513;20514;20515;20516;20517;20518;20519;20520;20521;20522;20523;20524;20525;20526;20527 20475 53 DLFHCVSFTLPR Unmodified 1490.734 0.73401926 30 CON__ENSEMBL:ENSBTAP00000024146;P20742 PZP Pregnancy zone protein yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 66.495 66.226 3 5.1718E-12 20679 20211116_3428_TMUAki_TMT10x_P_F1 128.36 110.89 + 3873800 6145600 0 6217400 4470800 5303800 4227200 4393000 4029400 4311800 4608900 3606700 5734800 295740 6324000 4278500 5439000 4294400 4510000 4128500 4214400 4428100 2 2 0 2 2 2 2 2 2 2 2 1812700 2893000 0 2958100 2190100 3301200 2221100 2192200 2011600 2068500 2272600 1687800 2699700 150260 3018300 2100400 3316900 2244900 2281100 2064900 2025300 2184200 1 1 0 1 1 1 1 1 1 1 1 2061100 3252600 0 3259300 2280700 2002600 2006100 2200800 2017800 2243200 2336300 1918900 3035100 145480 3305700 2178100 2122100 2049600 2228900 2063500 2189100 2243900 1 1 0 1 1 1 1 1 1 1 1 495880000 283440000 212440000 2980 30 2794 17102;17103;17104 20528;20529;20530 20528 3 DLFHGATFVPR Unmodified 1258.6459 0.64585618 2437 Q96DV4 MRPL38 39S ribosomal protein L38, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 52.117 52.117 3 2.8502E-06 14475 20211116_3447_TMUAki_TMT10x_S_F8 118.9 99.811 2250600 3972400 67110 3866900 2777600 3494800 2368600 2561000 2230000 2189200 2900600 2096100 3706200 256520 3946800 2657000 3562200 2419700 2639800 2298500 2153400 2777300 2 2 2 2 2 2 2 2 2 2 2 1195100 1923300 41288 1828700 1505100 2363800 1359800 1430300 1139900 1149000 1473600 1113100 1794300 141900 1880300 1442000 2354100 1380100 1493000 1181100 1133700 1411200 1 1 1 1 1 1 1 1 1 1 1 1055500 2049000 25822 2038200 1272500 1131000 1008800 1130600 1090200 1040200 1427000 982960 1911900 114610 2066500 1215000 1208200 1039600 1146900 1117500 1019700 1366100 1 1 1 1 1 1 1 1 1 1 1 400220000 195770000 204450000 2981 2437 2795 17105;17106;17107 20531;20532;20533 20533 3 DLFPYEESK Unmodified 1126.5183 0.51825563 1165 P51858;P51858-3;P51858-2 HDGF Hepatoma-derived growth factor yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.957 1 2 2 1 4 2 57.227 57.126 2 2.637E-06 18972 20211116_3430_TMUAki_TMT10x_P_F3 191.85 131.09 40358000 64517000 112560 87172000 92578000 85946000 50080000 51009000 67029000 50789000 60810000 37576000 60286000 3928100 87311000 87690000 86847000 53545000 53619000 67228000 49613000 58854000 8 8 3 8 8 8 8 8 8 8 8 28143000 45101000 112560 59818000 83887000 78507000 43364000 35545000 47199000 35642000 41881000 26203000 42139000 2998700 60264000 79408000 77860000 46224000 38311000 47661000 34806000 40565000 6 6 3 6 6 6 6 6 6 6 6 12215000 19416000 0 27354000 8690800 7439100 6715900 15464000 19830000 15148000 18930000 11373000 18147000 929390 27047000 8281300 8987200 7321500 15308000 19567000 14807000 18289000 2 2 0 2 2 2 2 2 2 2 2 4626500000 3208600000 1417900000 2982 1165 2796 17108;17109;17110;17111;17112;17113 20534;20535;20536;20537;20538;20539;20540;20541 20536 8 DLFPYEESKEK Unmodified 1383.6558 0.65581174 1165 P51858;P51858-3;P51858-2 HDGF Hepatoma-derived growth factor yes no 0 0 0 1 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 50.313 50.409 3 4.1532E-07 15001 20211116_3442_TMUAki_TMT10x_S_F4 136.93 105.11 5588900 10183000 95563 9143400 19694000 31283000 12585000 40992000 34573000 23703000 18489000 5204500 9497500 738010 9732200 18710000 30722000 13818000 40671000 33640000 23862000 18334000 4 4 2 4 4 4 4 4 4 4 4 4308400 7648600 95563 6941200 17833000 28795000 11295000 28588000 25015000 16760000 13179000 4012200 7134300 624580 7458000 16940000 27982000 12224000 28722000 24428000 16856000 13080000 3 3 2 3 3 3 3 3 3 3 3 1280600 2533900 0 2202200 1861400 2488000 1289600 12405000 9558600 6943800 5309800 1192300 2363200 113430 2274300 1770400 2739800 1594000 11948000 9211600 7006600 5253700 1 1 0 1 1 1 1 1 1 1 1 1367900000 1101400000 266490000 2983 1165 2797 17114;17115;17116;17117;17118 20542;20543;20544;20545;20546 20545 5 DLFQVAFNR Unmodified 1108.5665 0.56654322 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.2 2.64 1 2 2 2 3 66.499 66.785 2 3.3807E-05 20895 20211116_3436_TMUAki_TMT10x_P_F8 126.62 83.621 5647100 8999500 17276 9954100 6628800 6326800 6506900 5813800 5522800 6262200 6767100 5258200 8401100 498040 10033000 6354000 6657500 6576200 5950400 5705700 6097500 6489500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5647100 8999500 17276 9954100 6628800 6326800 6506900 5813800 5522800 6262200 6767100 5258200 8401100 498040 10033000 6354000 6657500 6576200 5950400 5705700 6097500 6489500 1 1 1 1 1 1 1 1 1 1 1 1722200000 396250000 1325900000 2984 1695 2798 17119;17120;17121;17122;17123 20547;20548;20549 20547 3 DLFTCTIKR Unmodified 1152.5961 0.59612879 2116 Q86VP6 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.8 2.64 2 2 1 3 2 46.675 46.585 3 3.2316E-05 14203 20211116_3429_TMUAki_TMT10x_P_F2 147.4 109.86 13377000 21717000 41171 24625000 31816000 28306000 16255000 21050000 19140000 18124000 20582000 12456000 20275000 1393400 24971000 30117000 28446000 17391000 21680000 19396000 17821000 19810000 5 5 4 5 5 5 5 5 5 5 5 8817100 14287000 40458 16513000 27740000 24465000 12650000 14242000 12559000 11979000 13598000 8209900 13340000 1033700 16808000 26222000 24203000 13618000 14928000 12818000 11793000 13085000 3 3 3 3 3 3 3 3 3 3 3 4560100 7429800 713.25 8112300 4076000 3840900 3604100 6807600 6580600 6145100 6984300 4245800 6935400 359650 8163800 3895700 4243000 3772600 6752000 6578700 6028900 6725000 2 2 1 2 2 2 2 2 2 2 2 1371800000 1077800000 294090000 2985 2116 2799 17124;17125;17126;17127;17128 20550;20551;20552;20553;20554 20551 5 DLFVPRPVLR Unmodified 1210.7186 0.71862719 2756 Q9GZR7 DDX24 ATP-dependent RNA helicase DDX24 yes yes 0 0 0 1 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 51.789 51.606 3 1.894E-06 14965 20211116_3440_TMUAki_TMT10x_S_F2 146.11 97.047 7724100 11791000 7070.9 13331000 8438200 9955600 7351600 6719700 7189400 6766000 8672400 7191800 11008000 639850 13441000 8063000 10278000 7508800 6996800 7373700 6606100 8320000 4 4 3 4 4 4 4 4 4 4 4 4267900 6420000 1693.9 7374100 5317200 6690800 4114900 3906300 4085900 3909300 4782900 3973800 5994100 352990 7445200 5067100 6795700 4235900 4112200 4182700 3817900 4592300 2 2 1 2 2 2 2 2 2 2 2 3456200 5371400 5377 5956900 3121000 3264800 3236700 2813400 3103500 2856700 3889500 3218100 5014300 286860 5995400 2995800 3481900 3272900 2884600 3191000 2788200 3727700 2 2 2 2 2 2 2 2 2 2 2 934640000 623880000 310760000 2986 2756 2800 17129;17130;17131;17132;17133 20555;20556;20557;20558 20557 4 DLGCHVELR Unmodified 1097.5288 0.52877751 1986 Q6NXE6;Q6NXE6-2 ARMC6 Armadillo repeat-containing protein 6 yes no 0 0 0 0 By MS/MS 3 0 1 1 34.097 33.857 3 0.0060716 10577 20211116_3441_TMUAki_TMT10x_S_F3 62.78 50.164 1687700 2756900 0 2602000 1725000 1367200 1929800 1392100 1550800 1330700 2076000 1571300 2571900 133820 2647000 1658800 1469500 1935000 1412300 1612900 1302200 1986400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1687700 2756900 0 2602000 1725000 1367200 1929800 1392100 1550800 1330700 2076000 1571300 2571900 133820 2647000 1658800 1469500 1935000 1412300 1612900 1302200 1986400 1 1 0 1 1 1 1 1 1 1 1 39803000 0 39803000 2987 1986 2801 17134 20559 20559 1 DLGEEHFK Unmodified 973.45051 0.45051041 38 CON__P02769 yes yes 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 36.226 36.149 3 0.0012839 11766 20211116_3441_TMUAki_TMT10x_S_F3 100.98 65.627 + 906410 1250800 12916 1413700 816400 517060 865840 1069700 1319500 1094000 1107200 844050 1167700 85924 1417300 784820 594480 889710 1060400 1315000 1067400 1074600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 906410 1250800 12916 1413700 816400 517060 865840 1069700 1319500 1094000 1107200 844050 1167700 85924 1417300 784820 594480 889710 1060400 1315000 1067400 1074600 2 2 2 2 2 2 2 2 2 2 2 90427000 0 90427000 2988 38 2802 17135;17136 20560;20561 20561 2 DLGLAFEIPPHMK Oxidation (M) 1482.7541 0.754086 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 1 0 By MS/MS By MS/MS 6.44 1.1 1 5 7 9 5 10 17 59.378 59.57 3;4 0.00024632 18670 20211116_3433_TMUAki_TMT10x_P_F5 81.92 60.288 160970000 264830000 2264600 266410000 201370000 273430000 180760000 197690000 193230000 180370000 209300000 149890000 247120000 15502000 271770000 192670000 276420000 184810000 204300000 196600000 176870000 201400000 40 40 27 40 40 40 40 40 40 40 40 96208000 154720000 1219400 154890000 129940000 205190000 114250000 117960000 114420000 105260000 122310000 89587000 144370000 9456500 158750000 124270000 203970000 116720000 123960000 116680000 103320000 117750000 16 16 12 16 16 16 16 16 16 16 16 64762000 110110000 1045200 111520000 71426000 68248000 66504000 79727000 78809000 75114000 86986000 60305000 102750000 6045400 113020000 68401000 72454000 68096000 80344000 79926000 73550000 83659000 24 24 15 24 24 24 24 24 24 24 24 12717000000 5985500000 6731300000 2989 2334 2803 17137;17138;17139;17140;17141;17142;17143;17144;17145;17146;17147;17148;17149;17150;17151;17152;17153;17154;17155;17156;17157;17158;17159;17160;17161;17162;17163 20562;20563;20564;20565;20566;20567;20568;20569;20570;20571;20572;20573;20574;20575;20576;20577;20578;20579;20580;20581;20582;20583;20584;20585;20586;20587;20588;20589;20590;20591;20592;20593;20594;20595;20596;20597;20598;20599;20600;20601;20602;20603;20604;20605;20606 20565 2677 45 DLGLAFEIPPHMK Unmodified 1466.7592 0.75917137 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 By MS/MS By MS/MS 6.57 0.791 2 7 10 2 8 13 68.336 68.504 3 1.0012E-05 23547 20211116_3446_TMUAki_TMT10x_S_F7 89.959 74.693 105440000 171680000 1230600 179030000 115200000 114590000 112880000 66953000 55542000 67763000 106470000 98178000 160230000 9700900 181150000 110460000 119650000 112850000 70502000 60821000 66148000 101140000 21 21 16 21 21 21 21 21 21 21 21 45138000 71225000 597640 72760000 46736000 66789000 50839000 30905000 24838000 29275000 44139000 42032000 66466000 4192600 74029000 44943000 67602000 50549000 33184000 27091000 28659000 41982000 9 9 7 9 9 9 9 9 9 9 9 60298000 100460000 632970 106270000 68468000 47806000 62042000 36049000 30704000 38488000 62335000 56146000 93760000 5508300 107130000 65515000 52043000 62298000 37318000 33730000 37489000 59154000 12 12 9 12 12 12 12 12 12 12 12 7513200000 3904000000 3609200000 2990 2334 2803 17164;17165;17166;17167;17168;17169;17170;17171;17172;17173;17174;17175;17176;17177;17178;17179;17180;17181;17182;17183;17184 20607;20608;20609;20610;20611;20612;20613;20614;20615;20616;20617;20618;20619;20620;20621;20622;20623;20624;20625;20626;20627;20628;20629;20630;20631;20632;20633;20634;20635;20636;20637;20638 20635 32 DLGLPTEAYISVEEVHDDGTPTSK Unmodified 2572.2181 0.21805744 1162 P51665 PSMD7 26S proteasome non-ATPase regulatory subunit 7 yes yes 0 0 0 0 By MS/MS By MS/MS 2.29 1.28 3 1 1 2 4 3 68.909 68.749 3;4 9.9887E-23 21653 20211116_3428_TMUAki_TMT10x_P_F1 154.42 145.25 51423000 84781000 646770 79179000 49999000 88005000 59240000 51180000 50289000 51777000 65442000 47881000 79089000 4376200 81303000 48182000 88282000 59329000 53912000 52090000 50544000 62660000 10 10 6 10 10 10 10 10 10 10 10 40455000 65068000 446550 60789000 36658000 75963000 46570000 38668000 38299000 38561000 50423000 37668000 60699000 3298600 62544000 35398000 75612000 46464000 41194000 39755000 37665000 48266000 7 7 4 7 7 7 7 7 7 7 7 10968000 19713000 200220 18390000 13341000 12042000 12669000 12512000 11990000 13216000 15019000 10213000 18390000 1077600 18760000 12784000 12670000 12865000 12719000 12335000 12878000 14394000 3 3 2 3 3 3 3 3 3 3 3 6848700000 4873400000 1975300000 2991 1162 2804 17185;17186;17187;17188;17189;17190;17191 20639;20640;20641;20642;20643;20644;20645;20646;20647;20648 20641 10 DLGLSESGEDVNAAILDESGK Unmodified 2117.9964 0.99643735 654 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 71.978 71.805 3 7.7613E-56 26006 20211116_3441_TMUAki_TMT10x_S_F3 233.63 219.21 35809000 58246000 228740 59605000 35605000 39387000 37850000 21294000 27043000 26959000 39292000 33343000 54354000 2089400 60409000 34208000 40965000 37941000 22733000 28419000 26096000 37525000 9 9 5 9 9 9 9 9 9 9 9 16938000 26372000 49155 28326000 16353000 23351000 17336000 9592200 12089000 12483000 18745000 15771000 24615000 773530 28685000 15706000 23786000 17371000 10534000 12764000 12073000 17876000 3 3 1 3 3 3 3 3 3 3 3 18871000 31874000 179590 31280000 19252000 16036000 20514000 11701000 14954000 14476000 20547000 17572000 29740000 1315900 31724000 18502000 17179000 20570000 12199000 15655000 14024000 19648000 6 6 4 6 6 6 6 6 6 6 6 5303500000 3110500000 2193000000 2992 654 2805 17192;17193;17194;17195;17196;17197 20649;20650;20651;20652;20653;20654;20655;20656;20657;20658 20657 10 DLGLSESGEDVNAAILDESGKK Unmodified 2246.0914 0.091400367 654 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 1 By MS/MS By MS/MS 3.3 0.9 2 4 3 1 6 4 64.962 64.733 3;4 1.7137E-55 22130 20211116_3430_TMUAki_TMT10x_P_F3 225.08 208.15 51803000 85939000 1074600 84631000 67172000 106480000 70863000 64789000 62222000 63324000 70965000 48241000 80186000 5421700 86757000 64560000 106190000 71419000 67933000 63988000 61906000 68187000 13 13 11 13 13 13 13 13 13 13 13 43033000 70348000 914590 70221000 55549000 96123000 61704000 53060000 50595000 51547000 58725000 40075000 65641000 4570800 72033000 53471000 95358000 61924000 56076000 52246000 50406000 56398000 10 10 9 10 10 10 10 10 10 10 10 8770300 15592000 160010 14410000 11624000 10354000 9158900 11729000 11627000 11777000 12240000 8166700 14544000 850870 14724000 11089000 10829000 9495600 11857000 11742000 11500000 11789000 3 3 2 3 3 3 3 3 3 3 3 6721200000 4550400000 2170900000 2993 654 2806 17198;17199;17200;17201;17202;17203;17204;17205;17206;17207 20659;20660;20661;20662;20663;20664;20665;20666;20667;20668;20669;20670;20671;20672;20673 20663 15 DLGTESQIFISR Unmodified 1364.6936 0.69359423 1133 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 0 By MS/MS By MS/MS 3.22 1.31 2 4 4 4 4 9 9 57.704 57.614 2;3 2.8683E-24 19130 20211116_3430_TMUAki_TMT10x_P_F3 251.34 208.74 165390000 266450000 469600 248160000 211200000 268660000 192160000 248900000 233820000 216050000 227490000 153970000 248560000 10359000 254760000 201870000 271980000 197200000 253080000 235830000 212350000 219650000 22 22 5 22 22 22 22 22 22 22 22 96388000 154040000 150830 146670000 131480000 201010000 120060000 142630000 135110000 122830000 130670000 89740000 143710000 6032500 150960000 125720000 200120000 122840000 147370000 136630000 120770000 126190000 12 12 3 12 12 12 12 12 12 12 12 69000000 112410000 318760 101490000 79716000 67641000 72103000 106270000 98714000 93220000 96822000 64234000 104850000 4326300 103800000 76144000 71864000 74359000 105700000 99193000 91581000 93460000 10 10 2 10 10 10 10 10 10 10 10 38065000000 20369000000 17696000000 2994 1133 2807 17208;17209;17210;17211;17212;17213;17214;17215;17216;17217;17218;17219;17220;17221;17222;17223;17224;17225 20674;20675;20676;20677;20678;20679;20680;20681;20682;20683;20684;20685;20686;20687;20688;20689;20690;20691;20692;20693;20694;20695;20696;20697 20677 24 DLGYIYFYQR Unmodified 1336.6452 0.64518747 1036 P45974;P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 68.413 68.574 2 0.0014497 21692 20211116_3436_TMUAki_TMT10x_P_F8 89.542 63.1 17630000 29913000 1444000 27118000 21043000 35807000 24778000 25026000 22988000 23770000 24815000 16426000 27901000 2855200 27992000 20358000 35700000 24882000 25951000 23529000 23267000 23881000 3 3 3 3 3 3 3 3 3 3 3 13339000 22429000 954790 20137000 15223000 29417000 18713000 17900000 16471000 16979000 17949000 12427000 20920000 2022100 20844000 14742000 29136000 18730000 18753000 16907000 16621000 17269000 2 2 2 2 2 2 2 2 2 2 2 4290700 7484100 489170 6980700 5820000 6390600 6064500 7126200 6516200 6791000 6866100 3998700 6981600 833040 7148200 5616200 6563300 6152700 7198300 6621800 6646300 6612600 1 1 1 1 1 1 1 1 1 1 1 1849400000 1192500000 656840000 2995 1036 2808 17226;17227;17228 20698;20699;20700 20699 3 DLHDANTDLIGR Unmodified 1338.6528 0.65279205 1212 P53985;P53985-2 SLC16A1 Monocarboxylate transporter 1 yes no 0 0 0 0 By MS/MS 2 0 1 1 37.334 37.433 3 6.9316E-08 9080 20211116_3440_TMUAki_TMT10x_S_F2 136.38 104.95 510350 834090 18556 949120 526620 448480 512360 699230 714150 620770 750910 475320 778720 59833 952650 505720 493400 526700 695930 719000 609510 723240 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 510350 834090 18556 949120 526620 448480 512360 699230 714150 620770 750910 475320 778720 59833 952650 505720 493400 526700 695930 719000 609510 723240 3 3 3 3 3 3 3 3 3 3 3 19222000 0 19222000 2996 1212 2809 17229 20701;20702;20703 20701 3 DLHDANTDLIGRHPK Unmodified 1700.8594 0.85943078 1212 P53985;P53985-2 SLC16A1 Monocarboxylate transporter 1 yes no 0 0 0 1 By MS/MS 4.67 0.471 1 2 3 33.489 33.462 4;5 1.579E-09 7779 20211116_3431_TMUAki_TMT10x_P_F4 128.96 115.76 3184800 5300200 116630 6109400 9405700 8092800 4670900 3923600 4408500 3803800 4692100 2966300 4948700 459870 6205100 8906700 8028400 4977400 4196100 4506400 3720000 4517600 3 3 3 3 3 3 3 3 3 3 3 3184800 5300200 116630 6109400 9405700 8092800 4670900 3923600 4408500 3803800 4692100 2966300 4948700 459870 6205100 8906700 8028400 4977400 4196100 4506400 3720000 4517600 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 579410000 579410000 0 2997 1212 2810 17230;17231;17232 20704;20705;20706 20704 3 DLIDEGHAATQLVNQLHDVVVENNLSDK Unmodified 3085.5316 0.53162086 928 P35249 RFC4 Replication factor C subunit 4 yes yes 0 0 0 0 By MS/MS 4 0 1 1 78.148 78.165 4 2.1169E-13 25983 20211116_3431_TMUAki_TMT10x_P_F4 119.14 107.62 6135600 9687700 124590 8779000 4645300 9481600 6052400 4845200 4511200 4811300 6703400 5713800 9036200 603920 9030800 4497100 9511700 6017900 5159200 4734600 4700400 6398700 1 1 1 1 1 1 1 1 1 1 1 6135600 9687700 124590 8779000 4645300 9481600 6052400 4845200 4511200 4811300 6703400 5713800 9036200 603920 9030800 4497100 9511700 6017900 5159200 4734600 4700400 6398700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 939350000 939350000 0 2998 928 2811 17233 20707 20707 1 DLIDNSFNR Unmodified 1092.52 0.51998696 2164 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 0 0 0 0 By MS/MS 3 0 1 1 47.6 47.575 2 3.3185E-05 15014 20211116_3430_TMUAki_TMT10x_P_F3 120.99 89.76 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2999 2164 2812 17234 20708 20708 1 DLIGIDNLVVPGR Unmodified 1379.7773 0.77726428 3298 Q9Y4F1;Q9Y4F1-2 FARP1 FERM, RhoGEF and pleckstrin domain-containing protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.67 1.11 1 2 1 2 4 2 74.912 74.92 2 0.040497 23617 20211116_3434_TMUAki_TMT10x_P_F6 52.837 34.398 27425000 45903000 488620 43159000 29826000 43920000 32876000 27944000 27251000 30102000 33784000 25539000 42822000 2743600 44235000 28704000 44337000 33014000 29282000 28201000 29310000 32388000 10 10 9 10 10 10 10 10 10 10 10 18394000 30580000 320110 28349000 18670000 33159000 21863000 18669000 18146000 20313000 22685000 17129000 28526000 1808100 29150000 18000000 33158000 21895000 19762000 18784000 19771000 21743000 6 6 5 6 6 6 6 6 6 6 6 9030500 15323000 168510 14810000 11156000 10761000 11013000 9275000 9104900 9789100 11099000 8409500 14296000 935510 15085000 10704000 11179000 11119000 9520600 9417000 9539300 10645000 4 4 4 4 4 4 4 4 4 4 4 14292000000 9719400000 4572400000 3000 3298 2813 17235;17236;17237;17238;17239;17240 20709;20710 20709 2 DLIGVQNLLK Unmodified 1111.6601 0.66010926 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 72.178 72.224 2 1.2039E-08 23232 20211116_3436_TMUAki_TMT10x_P_F8 174.41 86.93 3577600 5369200 0 6066000 4369800 6285300 3761900 3057400 3163200 3152800 3514700 3330800 5012700 274750 6142400 4172500 6317000 3829100 3274300 3256700 3075200 3379600 1 1 0 1 1 1 1 1 1 1 1 3577600 5369200 0 6066000 4369800 6285300 3761900 3057400 3163200 3152800 3514700 3330800 5012700 274750 6142400 4172500 6317000 3829100 3274300 3256700 3075200 3379600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 382430000 382430000 0 3001 1663 2814 17241;17242 20711;20712 20711 2 DLIHDQDEDEEEEEGQR Unmodified 2084.8407 0.84066499 3203 Q9UNZ2;Q9UNZ2-5;Q9UNZ2-4 NSFL1C NSFL1 cofactor p47 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 34.103 34.097 3 4.4499E-94 7591 20211116_3428_TMUAki_TMT10x_P_F1 348.92 344.82 235910 336760 355.98 657260 913820 507540 321070 411280 629890 243710 514080 219650 315430 28145 645640 861250 524120 366230 418000 623180 244920 499500 2 2 1 2 2 2 2 2 2 2 2 108060 139520 0 292410 809980 426310 216840 184070 273020 118480 222630 100600 130760 17550 289510 761660 420600 252710 197410 273500 118410 216320 1 1 0 1 1 1 1 1 1 1 1 127850 197240 355.98 364850 103830 81223 104230 227210 356870 125230 291460 119050 184680 10595 356130 99593 103520 113530 220590 349670 126510 283180 1 1 1 1 1 1 1 1 1 1 1 261190000 152310000 108880000 3002 3203 2815 17243;17244 20713;20714 20713 2 DLIHDQDEDEEEEEGQRFYAGGSER Unmodified 2952.2282 0.22818121 3203 Q9UNZ2;Q9UNZ2-4 NSFL1C NSFL1 cofactor p47 yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 44.756 44.684 4 1.0678E-105 13857 20211116_3439_TMUAki_TMT10x_S_F1 309.64 304.27 2926700 5038300 23081 5984900 3778800 4252400 2752900 4899600 4733100 4198900 5246700 2725100 4704800 197820 6012800 3598100 4453500 2907300 4928000 4746600 4129800 5045400 5 5 2 5 5 5 5 5 5 5 5 776290 1257600 0 1641900 1674800 2058800 1201000 1379900 1092700 1079200 1234100 722770 1174900 73022 1654100 1593700 2056400 1239700 1428300 1121400 1066400 1186100 1 1 0 1 1 1 1 1 1 1 1 2150400 3780800 23081 4343000 2104000 2193600 1551800 3519700 3640400 3119700 4012700 2002300 3530000 124800 4358700 2004400 2397100 1667600 3499700 3625300 3063400 3859300 4 4 2 4 4 4 4 4 4 4 4 2436700000 1754700000 681980000 3003 3203 2816 17245;17246;17247 20715;20716;20717;20718;20719 20716 5 DLIHTGVANDHEEDFELRK Unmodified 2237.0713 0.071274048 3322 Q9Y5L0;Q9Y5L0-3;Q9Y5L0-1;Q9Y5L0-5 TNPO3 Transportin-3 yes no 0 0 0 1 By MS/MS 4 0 1 1 45.852 46.054 5 2.5353E-08 13191 20211116_3442_TMUAki_TMT10x_S_F4 102.47 85.536 1183700 1812200 29475 2296800 986980 993490 911940 1380100 1505200 1318000 1710600 1102400 1692700 122850 2289400 946260 1101200 947310 1381800 1512700 1289700 1643800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1183700 1812200 29475 2296800 986980 993490 911940 1380100 1505200 1318000 1710600 1102400 1692700 122850 2289400 946260 1101200 947310 1381800 1512700 1289700 1643800 1 1 1 1 1 1 1 1 1 1 1 72587000 0 72587000 3004 3322 2817 17248 20720 20720 1 DLILADYGKK Unmodified 1134.6285 0.62847478 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 1 By MS/MS 6 0 1 1 53.627 53.725 3 0.020319 14968 20211116_3434_TMUAki_TMT10x_P_F6 61.344 33.862 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3005 1997 2818 17249 20721 20721 1 DLILNPR Unmodified 839.4865 0.48650199 1798 Q15393;Q15393-3 SF3B3 Splicing factor 3B subunit 3 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 43.771 43.871 2 0.024192 10961 20211116_3444_TMUAki_TMT10x_S_F5 80.462 51.95 4294800 6754400 0 7256900 10598000 11202000 6043400 7249300 6218000 5423700 6330400 3998600 6304400 411180 7426700 10046000 11080000 6373600 7515400 6322100 5372300 6103200 1 1 0 1 1 1 1 1 1 1 1 4294800 6754400 0 7256900 10598000 11202000 6043400 7249300 6218000 5423700 6330400 3998600 6304400 411180 7426700 10046000 11080000 6373600 7515400 6322100 5372300 6103200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 300490000 300490000 0 3006 1798 2819 17250;17251 20722;20723 20723 2 DLINLAK Unmodified 785.4647 0.46470391 765 P22087 FBL rRNA 2'-O-methyltransferase fibrillarin yes yes 0 0 0 0 By MS/MS 6 0 1 1 55.421 55.508 2 0.0012408 15710 20211116_3434_TMUAki_TMT10x_P_F6 142.64 14.792 4758900 7068700 85246 7862900 10134000 10316000 5636600 5660000 6070300 5340100 6859300 4431600 6598800 549280 8002000 9609400 10254000 5966000 5980100 6184500 5228600 6592400 1 1 1 1 1 1 1 1 1 1 1 4758900 7068700 85246 7862900 10134000 10316000 5636600 5660000 6070300 5340100 6859300 4431600 6598800 549280 8002000 9609400 10254000 5966000 5980100 6184500 5228600 6592400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 292350000 292350000 0 3007 765 2820 17252 20724 20724 1 DLIPYLEK Unmodified 989.54335 0.54334816 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 68.598 68.59 2 0.011987 21076 20211116_3434_TMUAki_TMT10x_P_F6 80.455 48.52 16788000 30793000 225900 28992000 25663000 35534000 22062000 24890000 25565000 25862000 24332000 15633000 28726000 1726700 29801000 24530000 35557000 22675000 25873000 25811000 25218000 23510000 3 3 3 3 3 3 3 3 3 3 3 11090000 20193000 183680 19158000 18364000 28934000 16291000 15972000 16507000 16544000 15468000 10327000 18838000 1192500 19764000 17567000 28582000 16640000 16911000 16747000 16134000 14954000 2 2 2 2 2 2 2 2 2 2 2 5697900 10599000 42216 9833300 7298900 6600400 5770400 8917800 9057700 9318100 8863500 5305600 9887600 534160 10037000 6962700 6975500 6034800 8962000 9063900 9084000 8556300 1 1 1 1 1 1 1 1 1 1 1 1162600000 881010000 281620000 3008 352 2821 17253;17254;17255;17256;17257 20725;20726;20727;20728;20729 20727 5 DLIQMLVQR Unmodified 1114.6169 0.61686423 1500 Q02880;Q02880-2 TOP2B DNA topoisomerase 2-beta yes no 0 0 0 0 By MS/MS 8 0 1 1 75.198 75.212 2 3.1939E-05 24438 20211116_3436_TMUAki_TMT10x_P_F8 114.89 67.145 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3009 1500 2822 17258 20730 20730 1 DLISHDEMFSDIYK Oxidation (M) 1727.7713 0.7712522 656 P13693 TPT1 Translationally-controlled tumor protein yes yes 0 0 1 0 By MS/MS By MS/MS 3.75 1.53 1 2 2 3 2 2 6 6 58.49 58.398 3 5.0229E-14 17374 20211116_3431_TMUAki_TMT10x_P_F4 147.26 126.8 96149000 167100000 1471800 157660000 118430000 185880000 104090000 135970000 139770000 130990000 124080000 89532000 155880000 9294900 161930000 113260000 186500000 107440000 140610000 140070000 128140000 120180000 17 17 13 17 17 17 17 17 17 17 17 65922000 112630000 822840 105840000 90022000 157620000 76917000 93497000 96916000 89311000 82907000 61385000 105070000 6426600 109230000 86029000 155940000 79325000 98173000 97223000 87398000 80411000 11 11 8 11 11 11 11 11 11 11 11 30227000 54472000 648970 51816000 28411000 28252000 27171000 42471000 42850000 41682000 41172000 28147000 50818000 2868300 52696000 27236000 30554000 28111000 42440000 42847000 40741000 39769000 6 6 5 6 6 6 6 6 6 6 6 23273000000 12694000000 10579000000 3010 656 2823 17259;17260;17261;17262;17263;17264;17265;17266;17267;17268;17269;17270 20731;20732;20733;20734;20735;20736;20737;20738;20739;20740;20741;20742;20743;20744;20745;20746;20747;20748;20749 20735 717 19 DLISHDEMFSDIYK Unmodified 1711.7763 0.77633758 656 P13693 TPT1 Translationally-controlled tumor protein yes yes 0 0 0 0 By MS/MS By MS/MS 3.22 1.31 1 2 2 2 2 4 5 65.447 65.289 3 4.7851E-19 23355 20211116_3441_TMUAki_TMT10x_S_F3 164.64 144.36 220120000 367900000 1767600 392710000 226140000 233340000 211330000 141220000 134780000 176880000 231790000 204940000 343390000 17711000 396490000 216420000 245470000 212770000 149300000 143910000 171280000 220590000 17 17 12 17 17 17 17 17 17 17 17 61995000 97973000 420830 103180000 72029000 110220000 73206000 49908000 47107000 54951000 63304000 57721000 91439000 4956300 105000000 69074000 110500000 73387000 53938000 49640000 53461000 60565000 6 6 3 6 6 6 6 6 6 6 6 158120000 269930000 1346800 289520000 154110000 123110000 138130000 91312000 87671000 121930000 168480000 147220000 251950000 12754000 291490000 147350000 134970000 139380000 95361000 94266000 117820000 160030000 11 11 9 11 11 11 11 11 11 11 11 26189000000 12753000000 13436000000 3011 656 2823 17271;17272;17273;17274;17275;17276;17277;17278;17279 20750;20751;20752;20753;20754;20755;20756;20757;20758;20759;20760;20761;20762;20763;20764;20765;20766 20760 17 DLIVTPATILK Unmodified 1182.7224 0.72237516 1223 P54687;P54687-5;P54687-3;P54687-4;P54687-2 BCAT1 Branched-chain-amino-acid aminotransferase, cytosolic yes no 0 0 0 0 By MS/MS By MS/MS 7.25 0.433 3 1 2 2 73.424 73.588 2;3 3.3937E-08 25547 20211116_3446_TMUAki_TMT10x_S_F7 116.55 92.391 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3012 1223 2824 17280;17281;17282;17283 20767;20768;20769;20770 20769 4 DLKEEFTEALR Unmodified 1349.6827 0.68269519 848 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 1 By MS/MS By MS/MS 4 1.1 1 2 2 3 2 61.803 61.823 3 1.6022E-06 19235 20211116_3431_TMUAki_TMT10x_P_F4 124.07 79.88 14824000 23728000 117060 27251000 14235000 18748000 16165000 12882000 15057000 14799000 17546000 13804000 22154000 1310100 27424000 13704000 19492000 16262000 13451000 15455000 14374000 16849000 3 3 2 3 3 3 3 3 3 3 3 5751200 8930100 90359 10617000 7178600 10274000 6506200 5068900 6158100 5646600 6664000 5355600 8339000 581020 10707000 6871800 10370000 6623900 5433700 6298000 5490900 6412900 1 1 1 1 1 1 1 1 1 1 1 9073200 14798000 26705 16634000 7056700 8474000 9658800 7813500 8899200 9152100 10882000 8448100 13815000 729130 16718000 6832100 9121200 9637800 8017600 9157000 8883300 10436000 2 2 1 2 2 2 2 2 2 2 2 1158200000 425920000 732290000 3013 848 2825 17284;17285;17286;17287;17288 20771;20772;20773;20774;20775 20772 5 DLKPENILLDEEGHIK Unmodified 1861.9785 0.97854286 1164;1803 P51812;Q15349;Q15349-3;Q15349-2;Q15418;Q15418-2;Q15418-3;Q15418-4 RPS6KA3;RPS6KA2;RPS6KA1 Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-2;Ribosomal protein S6 kinase alpha-1 no no 0 0 0 1 By matching By MS/MS 3.67 0.471 1 2 2 1 58.926 58.855 4 8.1689E-11 18494 20211116_3442_TMUAki_TMT10x_S_F4 135.27 116.68 6536000 10574000 149110 11196000 5972100 6706900 5790600 7511600 7679400 8189100 8122600 6086800 9868600 672940 11311000 5730800 7127500 5941700 7616900 7745500 7970000 7821900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6536000 10574000 149110 11196000 5972100 6706900 5790600 7511600 7679400 8189100 8122600 6086800 9868600 672940 11311000 5730800 7127500 5941700 7616900 7745500 7970000 7821900 2 2 2 2 2 2 2 2 2 2 2 1465800000 1164400000 301310000 3014 1164;1803 2826 17289;17290;17291 20776;20777 20776 2 DLKPENLLLASK Unmodified 1339.7711 0.77111627 1646 Q13555;Q13555-8;Q13555-5;Q13555-9;Q13555-11;Q13555-6;Q13555-10;Q13555-7;Q13555-4;Q13555-2;Q13555-3;Q13554;Q13554-2;Q13554-5;Q13554-8;Q13554-6;Q13554-4;Q13554-3;Q13554-7;Q13557-8;Q13557-6;Q13557-4;Q13557-11;Q13557-3;Q13557-5;Q13557-10;Q13557-9;Q9UQM7-2;Q9UQM7;Q13557;Q13557-12 CAMK2G;CAMK2B;CAMK2D;CAMK2A Calcium/calmodulin-dependent protein kinase type II subunit gamma;Calcium/calmodulin-dependent protein kinase type II subunit beta;Calcium/calmodulin-dependent protein kinase type II subunit delta;Calcium/calmodulin-dependent protein kinase type II subunit alpha yes no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 3 3 1 5 46.607 46.926 3 3.4289E-07 19442 20211116_3435_TMUAki_TMT10x_P_F7 123.88 86.768 9441800 14706000 19805 16406000 16831000 20118000 11841000 13119000 12881000 12110000 13091000 8791400 13729000 893880 16672000 16014000 20108000 12304000 13661000 13067000 11869000 12622000 8 8 4 8 8 8 8 8 8 8 8 7854100 12047000 0 13655000 15040000 18444000 10302000 10816000 10650000 9972900 10773000 7312900 11247000 747390 13889000 14302000 18323000 10708000 11356000 10824000 9774800 10388000 1 1 0 1 1 1 1 1 1 1 1 1587800 2659100 19805 2750300 1791000 1673700 1538400 2303100 2231200 2136900 2318700 1478500 2481600 146490 2783200 1711800 1785600 1595100 2304900 2242700 2093900 2234100 7 7 4 7 7 7 7 7 7 7 7 639500000 608130000 31369000 3015 1646 2827 17292;17293;17294;17295;17296;17297 20778;20779;20780;20781;20782;20783;20784;20785;20786 20778 9 DLKPQNILVTSSGQIK Unmodified 1739.9781 0.97814893 1469 Q00534 CDK6 Cyclin-dependent kinase 6 yes yes 0 0 0 1 By MS/MS By MS/MS 5 3.46 3 4 4 3 56.033 56.012 3;4 9.1277E-29 16421 20211116_3428_TMUAki_TMT10x_P_F1 180.1 137.89 55848000 95424000 449640 101500000 71861000 84841000 56874000 75794000 73274000 67718000 72442000 52001000 89063000 5001100 102870000 68536000 87255000 58981000 77277000 73797000 66469000 69908000 11 11 8 11 11 11 11 11 11 11 11 28806000 47139000 202860 49930000 48836000 63847000 37896000 37152000 36048000 32898000 35821000 26821000 43996000 2649800 50948000 46550000 63585000 38954000 38994000 36746000 32305000 34563000 6 6 4 6 6 6 6 6 6 6 6 27042000 48285000 246780 51569000 23024000 20994000 18978000 38642000 37226000 34819000 36621000 25180000 45067000 2351300 51920000 21986000 23670000 20027000 38284000 37051000 34164000 35345000 5 5 4 5 5 5 5 5 5 5 5 5313600000 3486300000 1827300000 3016 1469 2828 17298;17299;17300;17301;17302;17303;17304 20787;20788;20789;20790;20791;20792;20793;20794;20795;20796;20797 20787 11 DLKPQNLLIDDK Unmodified 1410.7718 0.77184455 517 P06493 CDK1 Cyclin-dependent kinase 1 yes yes 0 0 0 1 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 56.216 56.33 3 7.9674E-08 16386 20211116_3445_TMUAki_TMT10x_S_F6 110.98 75.041 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3017 517 2829 17305;17306;17307 20798;20799;20800 20799 3 DLKPQNLLIDDKGTIK Unmodified 1810.02 0.020013746 517 P06493 CDK1 Cyclin-dependent kinase 1 yes yes 0 0 0 2 By MS/MS By MS/MS 7 0.894 2 1 2 3 2 56.188 56.386 4 6.5998E-15 16463 20211116_3445_TMUAki_TMT10x_S_F6 149.34 138.29 68268000 117320000 460340 119910000 128530000 149600000 84661000 107980000 109280000 92287000 98585000 63566000 109480000 6646700 122590000 122150000 149630000 88932000 111410000 109720000 90778000 95433000 6 6 4 6 6 6 6 6 6 6 6 48104000 81653000 246540 83031000 110880000 132720000 70960000 78266000 78267000 66463000 68882000 44789000 76196000 4811000 85351000 105310000 130920000 74291000 81970000 78970000 65398000 66738000 4 4 2 4 4 4 4 4 4 4 4 20164000 35670000 213790 36881000 17650000 16873000 13702000 29710000 31018000 25823000 29703000 18776000 33288000 1835800 37240000 16837000 18712000 14641000 29443000 30751000 25380000 28694000 2 2 2 2 2 2 2 2 2 2 2 12821000000 9834900000 2986500000 3018 517 2830 17308;17309;17310;17311;17312 20801;20802;20803;20804;20805 20804 5 DLKPQNLLINR Unmodified 1322.767 0.76703394 1470 Q00535 CDK5 Cyclin-dependent-like kinase 5 yes yes 0 0 0 1 By MS/MS By MS/MS 3.33 3.3 2 1 1 2 49.523 49.403 3 1.3585E-06 15827 20211116_3439_TMUAki_TMT10x_S_F1 126.71 89.597 10059000 16830000 231700 18130000 19427000 19773000 12266000 15615000 14801000 12666000 14882000 9367300 15709000 1181100 18429000 18461000 19949000 12895000 15998000 14950000 12492000 14353000 4 4 4 4 4 4 4 4 4 4 4 6308200 10235000 147710 11046000 15942000 16598000 9403300 9830500 9180200 7785700 9292500 5874700 9553700 795580 11294000 15130000 16414000 9873200 10275000 9353100 7688200 8960700 2 2 2 2 2 2 2 2 2 2 2 3750400 6594600 83993 7084300 3484700 3175100 2862900 5784300 5620900 4880600 5589300 3492700 6155300 385490 7134100 3330800 3534400 3021800 5722400 5596500 4803900 5392800 2 2 2 2 2 2 2 2 2 2 2 399260000 195210000 204050000 3019 1470 2831 17313;17314;17315 20806;20807;20808;20809 20808 4 DLKPQNLLINTEGAIK Unmodified 1765.9938 0.993799 797 P24941;P24941-2 CDK2 Cyclin-dependent kinase 2 yes no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 63.182 63.508 3 6.634E-12 19064 20211116_3447_TMUAki_TMT10x_S_F8 140.46 127.48 33371000 57114000 403230 54013000 40546000 53899000 39409000 41431000 39465000 40875000 43330000 31075000 53282000 3206200 55320000 38871000 54636000 40036000 42737000 40283000 39944000 41679000 6 6 4 6 6 6 6 6 6 6 6 18488000 29745000 301320 28355000 22389000 37712000 22977000 22824000 21781000 21446000 22941000 17216000 27750000 1851200 29165000 21500000 37507000 23239000 23916000 22252000 21002000 22094000 3 3 2 3 3 3 3 3 3 3 3 14883000 27369000 101910 25658000 18157000 16187000 16432000 18608000 17684000 19429000 20389000 13859000 25532000 1355000 26155000 17372000 17129000 16797000 18821000 18031000 18941000 19585000 3 3 2 3 3 3 3 3 3 3 3 3943300000 2293000000 1650300000 3020 797 2832 17316;17317;17318;17319 20810;20811;20812;20813;20814;20815 20814 6 DLKPSNIFLVDTK Unmodified 1488.8188 0.81879474 734 P19525;P19525-2 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 63.021 63.304 3 3.8886E-06 20676 20211116_3435_TMUAki_TMT10x_P_F7 108.34 86.464 18240000 30033000 155490 29835000 21976000 29760000 21864000 19995000 18628000 18706000 22279000 16984000 28023000 1709400 30449000 21078000 30103000 22083000 20784000 19222000 18323000 21378000 3 3 3 3 3 3 3 3 3 3 3 11663000 18804000 126620 18808000 15004000 23477000 15015000 13064000 11673000 12113000 14147000 10860000 17546000 1131700 19256000 14395000 23395000 15127000 13779000 12110000 11869000 13571000 2 2 2 2 2 2 2 2 2 2 2 6576900 11228000 28872 11027000 6971800 6283300 6848800 6931300 6954900 6593400 8131600 6123900 10477000 577710 11193000 6683600 6708200 6956800 7004500 7112500 6453400 7807800 1 1 1 1 1 1 1 1 1 1 1 2049500000 1345100000 704380000 3021 734 2833 17320;17321;17322 20816;20817;20818 20816 3 DLKPSNILYVDESGNPESIR Unmodified 2245.1226 0.12264092 1164 P51812 RPS6KA3 Ribosomal protein S6 kinase alpha-3 yes yes 0 0 0 1 By MS/MS By MS/MS 4.75 0.829 2 1 1 2 2 59.359 59.515 3 3.5907E-11 17775 20211116_3445_TMUAki_TMT10x_S_F6 118.16 109.33 5783600 10340000 44802 9426900 7242500 12981000 7908800 7314700 6747900 7515300 8100400 5384300 9644900 402800 9734700 6954900 12877000 7951500 7729000 6963700 7331600 7772300 2 2 1 2 2 2 2 2 2 2 2 5783600 10340000 44802 9426900 7242500 12981000 7908800 7314700 6747900 7515300 8100400 5384300 9644900 402800 9734700 6954900 12877000 7951500 7729000 6963700 7331600 7772300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 932080000 932080000 0 3022 1164 2834 17323;17324;17325;17326 20819;20820;20821;20822 20822 4 DLKPSNLLLNTTCDLK Unmodified 1843.9713 0.97134899 845 P28482;P28482-2 MAPK1 Mitogen-activated protein kinase 1 yes no 0 0 0 1 By MS/MS By MS/MS 6 2.92 2 2 4 4 4 64.664 64.803 3 5.5271E-15 19235 20211116_3447_TMUAki_TMT10x_S_F8 146.3 0 174070000 288010000 1119500 302740000 204030000 213820000 169610000 187190000 177460000 195580000 223220000 162090000 268800000 15396000 306480000 194810000 222710000 174080000 191920000 181810000 190670000 213910000 12 12 9 12 12 12 12 12 12 12 12 49563000 79365000 354320 82812000 73148000 100960000 60977000 50970000 51115000 52261000 59760000 46151000 74069000 4769700 84510000 69854000 100610000 62183000 54384000 52739000 50988000 57381000 3 3 3 3 3 3 3 3 3 3 3 124510000 208650000 765220 219930000 130880000 112860000 108630000 136220000 126340000 143320000 163460000 115930000 194730000 10626000 221970000 124950000 122100000 111900000 137530000 129070000 139680000 156530000 9 9 6 9 9 9 9 9 9 9 9 7877300000 3361200000 4516100000 3023 845 2835 17327;17328;17329;17330;17331;17332;17333;17334 20823;20824;20825;20826;20827;20828;20829;20830;20831;20832;20833;20834 20828 12 DLKPVLDSYVFNDGSSR Unmodified 1910.9374 0.93740633 2607 Q99816 TSG101 Tumor susceptibility gene 101 protein yes yes 0 0 0 1 By MS/MS 6 0 2 2 67.333 67.267 3 5.8287E-15 20968 20211116_3445_TMUAki_TMT10x_S_F6 126.8 111.41 3996800 7089600 87615 6622400 4535900 4484900 4511200 5061500 4882900 4919000 5384200 3722000 6613600 420570 6757000 4354000 4713700 4588800 5112800 4969100 4810000 5178400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3996800 7089600 87615 6622400 4535900 4484900 4511200 5061500 4882900 4919000 5384200 3722000 6613600 420570 6757000 4354000 4713700 4588800 5112800 4969100 4810000 5178400 1 1 1 1 1 1 1 1 1 1 1 579450000 0 579450000 3024 2607 2836 17335;17336 20835;20836 20836 2 DLLAQAR Unmodified 785.43955 0.43955179 1085 P48995;P48995-2 TRPC1 Short transient receptor potential channel 1 yes no 0 0 0 0 By MS/MS By matching 4.5 0.5 1 1 1 1 34.32 34.421 2 0.03726 8232 20211116_3431_TMUAki_TMT10x_P_F4 76.035 0 3125500 4953600 13864 4673300 6198000 6865700 4162100 3765800 4065700 3597400 4214800 2910300 4621200 313340 4820100 5892500 6789400 4325200 3980200 4145700 3520300 4061300 2 2 1 2 2 2 2 2 2 2 2 3125500 4953600 13864 4673300 6198000 6865700 4162100 3765800 4065700 3597400 4214800 2910300 4621200 313340 4820100 5892500 6789400 4325200 3980200 4145700 3520300 4061300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 107520000 96490000 11034000 3025 1085 2837 17337;17338 20837;20838 20837 2 DLLDLLVEAK Unmodified 1127.6438 0.64379049 104 O00571;O00571-2;O15523;O15523-2 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 1 4 81.049 81.05 2;3 3.118E-06 27130 20211116_3431_TMUAki_TMT10x_P_F4 147.95 85.484 5291300 8389100 79567 8624800 5213500 8096700 5859800 3949300 4999100 5242000 6088700 4927300 7828800 511750 8774200 5020000 8187800 5883400 4263400 5162100 5066400 5839800 2 2 2 2 2 2 2 2 2 2 2 3988000 6178000 37026 6433000 3845100 6539800 4275800 2962700 3848800 3968800 4488800 3713500 5765700 363140 6546300 3700000 6575300 4301400 3222900 3956900 3834600 4310400 1 1 1 1 1 1 1 1 1 1 1 1303300 2211100 42541 2191800 1368300 1556900 1584000 986580 1150300 1273300 1599900 1213800 2063100 148610 2227900 1320000 1612500 1582100 1040500 1205200 1231700 1529500 1 1 1 1 1 1 1 1 1 1 1 874110000 377430000 496680000 3026 104 2838 17339;17340;17341;17342;17343 20839;20840;20841;20842 20839 4 DLLEPGCSVLLNHK Unmodified 1593.8185 0.81847717 1336 P62191;P62191-2 PSMC1 26S protease regulatory subunit 4 yes no 0 0 0 0 By MS/MS By MS/MS 6.75 0.433 1 3 2 2 58.263 58.301 3 4.8207E-19 17218 20211116_3445_TMUAki_TMT10x_S_F6 164.53 142.3 10948000 18700000 255440 19552000 11892000 9862100 9156000 13107000 10381000 11908000 13773000 10196000 17452000 1159000 19741000 11349000 10718000 9468300 13126000 10627000 11679000 13181000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10948000 18700000 255440 19552000 11892000 9862100 9156000 13107000 10381000 11908000 13773000 10196000 17452000 1159000 19741000 11349000 10718000 9468300 13126000 10627000 11679000 13181000 2 2 2 2 2 2 2 2 2 2 2 539090000 0 539090000 3027 1336 2839 17344;17345;17346;17347 20843;20844;20845;20846;20847 20845 5 DLLEVADVLEK Unmodified 1242.6707 0.67073352 2853 Q9HAV7 GRPEL1 GrpE protein homolog 1, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 2.43 1.05 2 1 3 1 4 3 78.939 78.895 2 3.1317E-08 25872 20211116_3428_TMUAki_TMT10x_P_F1 152.07 88.252 14505000 24037000 365820 22552000 16426000 19723000 17897000 12863000 11881000 14145000 17388000 13508000 22423000 1520400 23070000 15806000 20113000 17890000 13462000 12546000 13762000 16603000 3 3 2 3 3 3 3 3 3 3 3 5954600 9758000 0 9032900 5891500 10499000 6732200 5703300 5556800 6360800 7461700 5543900 9102500 442750 9288200 5666900 10497000 6748400 6060400 5772100 6185200 7139100 1 1 0 1 1 1 1 1 1 1 1 8550900 14279000 365820 13519000 10534000 9224200 11164000 7159300 6324400 7784200 9926200 7964400 13321000 1077600 13781000 10139000 9615500 11142000 7402000 6773600 7576700 9464000 2 2 2 2 2 2 2 2 2 2 2 3388800000 1979200000 1409600000 3028 2853 2840 17348;17349;17350;17351;17352;17353;17354 20848;20849;20850;20851 20848 4 DLLFILTAK Unmodified 1032.6219 0.62193284 1847 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 0 By MS/MS 2 0 1 1 80.18 80.164 2 0.064989 27798 20211116_3429_TMUAki_TMT10x_P_F2 60.717 23.071 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3029 1847 2841 17355 20852 20852 1 DLLFQALGR Unmodified 1031.5764 0.57637963 2941 Q9NSD9 FARSB Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 0 By MS/MS By MS/MS 5 3.29 2 1 2 3 2 69.963 70 2 8.9453E-05 22258 20211116_3436_TMUAki_TMT10x_P_F8 140.63 84.456 31226000 50727000 131760 47611000 37789000 54504000 37603000 38712000 37665000 37204000 40848000 29075000 47322000 2667900 48895000 36229000 54745000 38154000 40111000 38428000 36398000 39306000 7 7 4 7 7 7 7 7 7 7 7 20117000 31750000 80707 30212000 23397000 40866000 24558000 23234000 22017000 21724000 24878000 18731000 29621000 1715900 31089000 22463000 40578000 24771000 24468000 22611000 21279000 23910000 4 4 3 4 4 4 4 4 4 4 4 11110000 18977000 51057 17399000 14392000 13638000 13045000 15477000 15647000 15480000 15970000 10344000 17702000 952020 17805000 13765000 14167000 13383000 15644000 15816000 15118000 15395000 3 3 1 3 3 3 3 3 3 3 3 2025700000 1244500000 781230000 3030 2941 2842 17356;17357;17358;17359;17360 20853;20854;20855;20856;20857;20858;20859 20856 7 DLLHLPELFSPGMLVR Oxidation (M) 1851.9917 0.99169051 1726 Q14690 PDCD11 Protein RRP5 homolog yes yes 0 0 1 0 By MS/MS By MS/MS 8 0 2 1 1 78.693 78.681 3 0.0090553 25268 20211116_3447_TMUAki_TMT10x_S_F8 51.888 38.475 5465100 9132400 86834 7795400 6298500 8921900 6774600 6174200 6184500 7118700 7186200 5088800 8516500 498450 8063900 6053400 8957800 6828600 6444500 6353000 6913600 6901200 2 2 1 2 2 2 2 2 2 2 2 2843400 4604100 86834 4149800 2537600 5586200 3140700 3123400 3161800 3681500 3908700 2648100 4294400 312380 4287100 2453600 5546900 3154900 3316700 3242200 3572600 3747500 1 1 1 1 1 1 1 1 1 1 1 2621700 4528200 0 3645600 3760900 3335700 3633900 3050800 3022700 3437200 3277500 2440700 4222000 186070 3776900 3599800 3410900 3673700 3127800 3110900 3341000 3153800 1 1 0 1 1 1 1 1 1 1 1 1155500000 534720000 620820000 3031 1726 2843 17361;17362 20860;20861 20861 2319 2 DLLHNEDRHDDYFQER Unmodified 2100.9249 0.92494416 2202 Q8N684;Q8N684-2;Q8N684-3 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes no 0 0 0 1 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 37.363 37.111 4;5 5.0741E-05 10385 20211116_3429_TMUAki_TMT10x_P_F2 87.16 78.064 1335100 2806700 70776 3222400 4185000 3599600 2563000 2847500 2814100 2420600 2490600 1243700 2620500 216570 3263700 3976300 3626900 2692400 2920400 2840400 2381700 2412600 3 3 3 3 3 3 3 3 3 3 3 1030700 2264400 59707 2582500 3910100 3332400 2297400 2325300 2232100 2041800 1927700 960150 2114100 181430 2623300 3712200 3325900 2412600 2406500 2262800 2005800 1869000 2 2 2 2 2 2 2 2 2 2 2 304390 542350 11069 639910 274940 267250 265670 522250 582040 378790 562820 283500 506430 35139 640350 264060 300970 279760 513830 577600 375860 543520 1 1 1 1 1 1 1 1 1 1 1 443360000 266350000 177010000 3032 2202 2844 17363;17364;17365 20862;20863;20864 20863 3 DLLHPSPEEEK Unmodified 1292.6248 0.62484596 1015 P42677 RPS27 40S ribosomal protein S27 yes yes 0 0 0 0 By MS/MS By MS/MS 2.43 1.18 2 2 1 2 3 4 38.834 38.78 3 8.0027E-06 12637 20211116_3441_TMUAki_TMT10x_S_F3 110.08 83.37 5352100 8648700 62438 10126000 9643300 8520700 5527600 6229200 6631300 5315400 7786100 4983500 8075700 529850 10202000 9144600 8727900 5856300 6421700 6738900 5228900 7475200 9 9 7 9 9 9 9 9 9 9 9 2669900 3978300 33379 4728000 7107300 6201500 3230600 3101700 3265500 2560000 3833700 2485900 3715000 289380 4792400 6717800 6157100 3480700 3293800 3340700 2522500 3680700 3 3 2 3 3 3 3 3 3 3 3 2682200 4670300 29059 5397900 2535900 2319200 2297000 3127500 3365900 2755400 3952300 2497600 4360600 240460 5409300 2426900 2570700 2375600 3127900 3398200 2706400 3794500 6 6 5 6 6 6 6 6 6 6 6 483600000 300710000 182890000 3033 1015 2845 17366;17367;17368;17369;17370;17371;17372 20865;20866;20867;20868;20869;20870;20871;20872;20873 20871 9 DLLNMYIETEGK Unmodified 1424.6857 0.68573166 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 0 By MS/MS By MS/MS 3.88 1.05 1 2 2 3 4 4 76.007 75.97 2;3 2.9696E-06 24141 20211116_3444_TMUAki_TMT10x_S_F5 118.87 88.302 23321000 37630000 78263 39161000 24655000 24112000 26883000 13528000 12905000 16601000 24130000 21714000 35118000 1836300 39618000 23689000 25254000 26719000 14380000 14139000 16087000 22930000 7 7 4 7 7 7 7 7 7 7 7 6410000 9578300 29283 10777000 6072100 8369100 6841700 3203200 2979900 3904300 6476100 5968100 8942000 502220 10874000 5839900 8558300 6780000 3538500 3324600 3784300 6139100 2 2 1 2 2 2 2 2 2 2 2 16911000 28052000 48980 28384000 18583000 15743000 20041000 10324000 9925500 12697000 17654000 15745000 26176000 1334100 28744000 17849000 16696000 19939000 10842000 10814000 12303000 16791000 5 5 3 5 5 5 5 5 5 5 5 2429900000 979700000 1450200000 3034 2345 2846 17373;17374;17375;17376;17377;17378;17379;17380 20874;20875;20876;20877;20878;20879;20880;20881 20881 8 DLLNMYIETEGK Oxidation (M) 1440.6806 0.68064628 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 1 0 By MS/MS By MS/MS 4.46 1.08 3 4 3 3 7 6 67.276 67.206 2;3 3.2417E-06 21383 20211116_3431_TMUAki_TMT10x_P_F4 111.79 90.542 57692000 97743000 614610 89052000 65964000 107680000 67562000 95545000 105030000 95772000 83420000 53720000 91172000 5213600 91740000 63310000 108270000 69608000 97762000 104450000 93526000 81141000 17 17 11 17 17 17 17 17 17 17 17 34862000 56773000 271210 51817000 39850000 78513000 41466000 55388000 61552000 55167000 48214000 32461000 52957000 3083700 53611000 38258000 77817000 42598000 57475000 61266000 53888000 46924000 10 10 7 10 10 10 10 10 10 10 10 22831000 40969000 343390 37236000 26114000 29163000 26096000 40157000 43481000 40605000 35205000 21259000 38215000 2129900 38130000 25051000 30454000 27010000 40287000 43180000 39639000 34217000 7 7 4 7 7 7 7 7 7 7 7 8935100000 5308200000 3626900000 3035 2345 2846 17381;17382;17383;17384;17385;17386;17387;17388;17389;17390;17391;17392;17393 20882;20883;20884;20885;20886;20887;20888;20889;20890;20891;20892;20893;20894;20895;20896;20897;20898;20899 20885 2687 18 DLLPYGFAIHHAGMTR Oxidation (M) 1813.8934 0.89337344 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 1 0 By MS/MS By MS/MS 3.8 3.43 3 2 3 2 48.43 48.368 3;4 0.00053312 13324 20211116_3428_TMUAki_TMT10x_P_F1 68.845 59.308 5222500 8275100 95411 9526700 7989500 9043200 6183500 7688800 7615400 6619300 7766200 4863200 7726200 539410 9623100 7619700 9212000 6411000 7853700 7690100 6508900 7487100 6 6 5 6 6 6 6 6 6 6 6 2517300 4248100 33041 4539900 5217400 6842400 3751600 3907600 3984500 3460300 3755300 2343900 3965000 256070 4645300 4966400 6762600 3889300 4107700 4035200 3397900 3629700 3 3 2 3 3 3 3 3 3 3 3 2705100 4027000 62370 4986800 2772100 2200800 2431900 3781100 3631000 3159100 4010900 2519200 3761200 283340 4977900 2653300 2449400 2521700 3746000 3654900 3110900 3857400 3 3 3 3 3 3 3 3 3 3 3 3925200000 1973000000 1952200000 3036 352 2847 17394;17395;17396;17397;17398 20900;20901;20902;20903;20904;20905;20906 20901 260 7 DLLPYGFAIHHAGMTR Unmodified 1797.8985 0.89845882 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 52.731 52.586 4 2.6866E-07 14992 20211116_3428_TMUAki_TMT10x_P_F1 105.28 90.935 1370200 2398500 23958 2399100 1539900 1876700 1520200 1556900 1601500 1497700 1944800 1275900 2238100 125810 2439600 1476700 1936900 1545600 1597300 1637900 1465200 1865400 3 3 2 3 3 3 3 3 3 3 3 439150 692580 0 786980 722270 962840 615560 467870 504070 462360 621400 408790 646600 27880 798810 689050 958910 626520 500510 521840 451800 595810 1 1 0 1 1 1 1 1 1 1 1 931040 1705900 23958 1612100 817660 913880 904660 1089100 1097400 1035300 1323400 867070 1591500 97930 1640800 787650 978010 919060 1096800 1116000 1013400 1269600 2 2 2 2 2 2 2 2 2 2 2 884280000 623540000 260740000 3037 352 2847 17399;17400 20907;20908;20909 20907 3 DLLQNLLK Unmodified 955.57023 0.57023162 1470 Q00535;Q00535-2 CDK5 Cyclin-dependent-like kinase 5 yes no 0 0 0 0 By MS/MS 8 0 1 1 74.813 74.679 2 0.0016381 23672 20211116_3447_TMUAki_TMT10x_S_F8 145.63 74.721 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3038 1470 2848 17401 20910 20910 1 DLLQQVPNAHK Unmodified 1261.6779 0.67788459 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4;Q7Z4S6-6 KIF21A Kinesin-like protein KIF21A yes no 0 0 0 0 By MS/MS 6 0 1 1 42.852 43.018 3 0.065636 11031 20211116_3445_TMUAki_TMT10x_S_F6 36.847 9.7488 1487800 2343200 21742 3200200 1328700 931850 1202800 1576400 1758800 1477700 2102300 1385500 2189700 141390 3170300 1272100 1103700 1243800 1567300 1777200 1447200 2017400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1487800 2343200 21742 3200200 1328700 931850 1202800 1576400 1758800 1477700 2102300 1385500 2189700 141390 3170300 1272100 1103700 1243800 1567300 1777200 1447200 2017400 1 1 1 1 1 1 1 1 1 1 1 101330000 0 101330000 3039 2082 2849 17402 20911 20911 1 DLLTELQK Unmodified 958.53351 0.53351176 2107 Q86UP2 KTN1 Kinectin yes yes 0 0 0 0 By MS/MS 4 0 1 1 55.386 55.368 2 0.0062334 17065 20211116_3442_TMUAki_TMT10x_S_F4 92.925 2.268 2779400 3609400 0 5128000 2359700 1992500 2583300 3052000 2879100 2552400 3559500 2587900 3373600 223330 5077300 2268100 2247100 2617800 3034700 2940200 2513400 3412700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2779400 3609400 0 5128000 2359700 1992500 2583300 3052000 2879100 2552400 3559500 2587900 3373600 223330 5077300 2268100 2247100 2617800 3034700 2940200 2513400 3412700 1 1 0 1 1 1 1 1 1 1 1 365570000 0 365570000 3040 2107 2850 17403 20912 20912 1 DLLTPVSR Unmodified 899.50763 0.50763136 2747 Q9C0B1 FTO Alpha-ketoglutarate-dependent dioxygenase FTO yes yes 0 0 0 0 By matching By MS/MS 4.5 0.5 1 1 1 1 43.555 43.671 2 0.012526 10959 20211116_3444_TMUAki_TMT10x_S_F5 79.906 32.839 1404100 2294100 46638 2590000 1397100 1339200 1236500 1909300 1940500 1801300 2106500 1307700 2141700 159780 2602600 1338400 1454300 1284400 1909200 1949200 1763700 2026900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1404100 2294100 46638 2590000 1397100 1339200 1236500 1909300 1940500 1801300 2106500 1307700 2141700 159780 2602600 1338400 1454300 1284400 1909200 1949200 1763700 2026900 1 1 1 1 1 1 1 1 1 1 1 180830000 115050000 65778000 3041 2747 2851 17404;17405 20913 20913 1 DLLVQQASQCLSK Unmodified 1488.7606 0.76062794 1874 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 59.201 59.933 3 7.5416E-08 19358 20211116_3435_TMUAki_TMT10x_P_F7 121.24 91.695 9876100 16189000 79955 15151000 15602000 25223000 13887000 18061000 15085000 15699000 14084000 9195100 15102000 835280 15680000 14913000 24914000 14213000 18654000 15259000 15430000 13618000 2 2 1 2 2 2 2 2 2 2 2 9876100 16189000 79955 15151000 15602000 25223000 13887000 18061000 15085000 15699000 14084000 9195100 15102000 835280 15680000 14913000 24914000 14213000 18654000 15259000 15430000 13618000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 709580000 709580000 0 3042 1874 2852 17406;17407 20914;20915;20916 20914 3 DLLVQYATGKK Unmodified 1234.6921 0.69213767 2980 Q9NVU7;Q9NVU7-2 SDAD1 Protein SDA1 homolog yes no 0 0 0 1 By MS/MS 2 0 1 1 55.763 55.557 3 0.014777 16580 20211116_3440_TMUAki_TMT10x_S_F2 62.528 27.641 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3043 2980 2853 17408 20917 20917 1 DLLVTGAYEISDQSGGAGGLR Unmodified 2078.028 0.02801225 1117 P49755 TMED10 Transmembrane emp24 domain-containing protein 10 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.894 2 1 2 3 2 70.386 70.286 3 4.7142E-35 22695 20211116_3431_TMUAki_TMT10x_P_F4 187.75 174.92 16083000 25627000 291500 24758000 17290000 22458000 18696000 13290000 12787000 14619000 18669000 14977000 23909000 1419200 25284000 16631000 22814000 18708000 14015000 13475000 14223000 17827000 6 6 5 6 6 6 6 6 6 6 6 10876000 17355000 95992 16754000 10862000 17835000 12372000 9397300 9342500 10351000 12559000 10128000 16192000 788210 17150000 10458000 17913000 12377000 10009000 9751000 10070000 12015000 4 4 3 4 4 4 4 4 4 4 4 5206400 8271700 195500 8004300 6428400 4622200 6324000 3892900 3444100 4268500 6110100 4849100 7717400 630970 8134000 6173100 4901000 6331000 4006100 3724400 4153400 5811600 2 2 2 2 2 2 2 2 2 2 2 3996400000 2424200000 1572200000 3044 1117 2854 17409;17410;17411;17412;17413 20918;20919;20920;20921;20922;20923 20919 6 DLMACAQTGSGK Oxidation (M) 1253.538 0.53802156 104 O00571;O00571-2;O15523;O15523-2;O15523-3;Q9NQI0;Q9NQI0-3;Q9NQI0-2;Q9NQI0-4 DDX3X;DDX3Y;DDX4 ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX4 yes no 0 0 1 0 By MS/MS 5.5 0.5 1 1 2 33.413 33.586 3 0.028851 7452 20211116_3445_TMUAki_TMT10x_S_F6 45.507 33.087 124410 211690 1885.8 199380 140630 107270 148970 90541 114110 104410 153960 115850 197490 12299 202890 135170 114590 149590 93316 119030 101400 147290 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 124410 211690 1885.8 199380 140630 107270 148970 90541 114110 104410 153960 115850 197490 12299 202890 135170 114590 149590 93316 119030 101400 147290 1 1 1 1 1 1 1 1 1 1 1 6059900 0 6059900 3045 104 2855 17414;17415 20924 20924 80 1 DLMPHDLAR Oxidation (M) 1082.5179 0.51787847 1237 P55084;P55084-2 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 0 0 1 0 By MS/MS By MS/MS 2.75 0.829 2 1 1 1 3 31.718 31.62 3 0.00052656 9676 20211116_3441_TMUAki_TMT10x_S_F3 98.233 74.078 311230 520410 738.32 479300 335330 296760 370540 305680 386100 335790 429820 289790 485450 26829 489140 322460 313780 374500 311240 393660 326710 413280 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 311230 520410 738.32 479300 335330 296760 370540 305680 386100 335790 429820 289790 485450 26829 489140 322460 313780 374500 311240 393660 326710 413280 1 1 1 1 1 1 1 1 1 1 1 44881000 0 44881000 3046 1237 2856 17416;17417;17418;17419 20925;20926;20927 20926 1676 3 DLMPHDLAR Unmodified 1066.523 0.52296385 1237 P55084;P55084-2 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 0 0 0 0 By MS/MS 4 0 1 1 36.404 36.537 3 0.061492 9535 20211116_3442_TMUAki_TMT10x_S_F4 38.567 10.554 336640 552020 3529.4 559380 405360 349480 422080 374060 357070 358760 474430 313470 515120 32161 567000 389320 369520 425240 378620 370260 351010 454030 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 336640 552020 3529.4 559380 405360 349480 422080 374060 357070 358760 474430 313470 515120 32161 567000 389320 369520 425240 378620 370260 351010 454030 1 1 1 1 1 1 1 1 1 1 1 7273800 0 7273800 3047 1237 2856 17420 20928 20928 1 DLMVGDEASELR Oxidation (M) 1349.6133 0.613295 1297 P61160 ACTR2 Actin-related protein 2 yes yes 0 0 1 0 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 46.608 46.435 2 1.2439E-05 12588 20211116_3428_TMUAki_TMT10x_P_F1 112.04 93.895 3632100 6201400 108720 8175800 7501600 8080200 4566300 6066100 6100100 5083600 5596000 3382600 5794000 445820 8199700 7125000 8192200 4832700 6239800 6120800 5005400 5413800 3 3 2 3 3 3 3 3 3 3 3 2654100 4485300 108720 5935500 6675800 7319100 3920700 4401000 4269800 3690500 4025500 2472100 4190700 377690 5973400 6338400 7305300 4131800 4600600 4319900 3633600 3890800 2 2 2 2 2 2 2 2 2 2 2 977960 1716100 0 2240300 825840 761130 645620 1665100 1830300 1393100 1570400 910490 1603300 68124 2226300 786620 886940 700980 1639200 1801000 1371800 1523000 1 1 0 1 1 1 1 1 1 1 1 471560000 400980000 70584000 3048 1297 2857 17421;17422;17423 20929;20930;20931 20929 1750 3 DLNCVPEIADTLGAVAK Unmodified 1784.8978 0.8978497 128 O14744;O14744-5 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 5 0.775 3 4 3 5 5 77.898 77.895 2;3 3.2849E-07 24907 20211116_3434_TMUAki_TMT10x_P_F6 105.19 87.327 18842000 30753000 431100 27524000 22292000 26253000 22754000 19652000 18637000 20794000 23090000 17547000 28684000 2000100 28288000 21412000 26675000 22929000 20348000 19298000 20262000 22137000 4 4 3 4 4 4 4 4 4 4 4 7794200 11173000 132070 10703000 7108000 13529000 8365900 7119500 6921100 7870800 8360700 7258200 10424000 759670 10995000 6855200 13464000 8375400 7584500 7155400 7656100 8020700 2 2 2 2 2 2 2 2 2 2 2 11048000 19580000 299030 16821000 15184000 12724000 14388000 12533000 11716000 12924000 14730000 10289000 18260000 1240400 17294000 14557000 13211000 14553000 12764000 12143000 12606000 14116000 2 2 1 2 2 2 2 2 2 2 2 5867000000 3284400000 2582500000 3049 128 2858 17424;17425;17426;17427;17428;17429;17430;17431;17432;17433 20932;20933;20934;20935;20936;20937;20938 20933 7 DLNDRPVGPR Unmodified 1137.5891 0.58906958 2161 Q8IXT5 RBM12B RNA-binding protein 12B yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 29.657 29.506 3 5.7704E-05 8867 20211116_3441_TMUAki_TMT10x_S_F3 121.6 87.713 424900 685200 6201.8 661170 599390 708390 471460 442500 463430 419560 570960 395670 639280 43451 676910 571890 712770 484660 462630 475630 410710 547450 2 2 2 2 2 2 2 2 2 2 2 280140 463950 5051.2 444560 443480 566960 328080 288830 283880 266900 372410 260880 432840 30221 456720 422630 563780 337450 307040 293880 261580 356510 1 1 1 1 1 1 1 1 1 1 1 144760 221250 1150.7 216610 155910 141430 143390 153670 179550 152650 198550 134790 206430 13230 220190 149250 148990 147220 155590 181750 149130 190940 1 1 1 1 1 1 1 1 1 1 1 18478000 11041000 7437300 3050 2161 2859 17434;17435;17436 20939;20940 20940 2 DLNFEKIIK Unmodified 1118.6336 0.63356015 3104 Q9UFH2 DNAH17 Dynein heavy chain 17, axonemal yes yes 0 0 0 1 By MS/MS 3 0 1 1 66.899 66.437 3 0.095572 23860 20211116_3441_TMUAki_TMT10x_S_F3 44.318 9.7854 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3051 3104 2860 17437 20941 20941 1 DLNFEVR Unmodified 891.44503 0.4450311 840 P28288;P28288-2 ABCD3 ATP-binding cassette sub-family D member 3 yes no 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 47.21 47.143 2 0.10109 13566 20211116_3442_TMUAki_TMT10x_S_F4 54.157 14.2 18558000 26816000 0 33214000 35332000 32785000 20821000 23535000 26949000 21470000 26369000 17278000 25046000 1497200 33426000 33495000 33218000 22068000 24334000 27127000 21053000 25455000 6 6 0 6 6 6 6 6 6 6 6 12926000 18376000 0 23088000 30404000 27436000 15008000 15598000 17854000 14437000 17442000 12034000 17164000 1116400 23286000 28753000 27416000 16116000 16421000 18024000 14148000 16839000 4 4 0 4 4 4 4 4 4 4 4 5632800 8440400 0 10126000 4927200 5349000 5812900 7937800 9094700 7032100 8926300 5244100 7882100 380850 10140000 4741700 5802100 5951500 7912800 9102700 6905200 8616100 2 2 0 2 2 2 2 2 2 2 2 1090700000 701130000 389590000 3052 840 2861 17438;17439;17440;17441;17442 20942;20943;20944 20944 3 DLNHVCVISETGK Unmodified 1470.7137 0.71367774 470 P00492 HPRT1 Hypoxanthine-guanine phosphoribosyltransferase yes yes 0 0 0 0 By matching By MS/MS 4.33 0.471 2 1 1 2 43.289 43.434 3 0.0012294 10889 20211116_3444_TMUAki_TMT10x_S_F5 71.692 56.541 4772100 7476100 111950 9103800 4147100 3865600 3238000 10559000 9883300 8136300 8147400 4444100 6982100 491220 9094100 3960300 4411600 3537700 10325000 9702100 8046200 7913200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4772100 7476100 111950 9103800 4147100 3865600 3238000 10559000 9883300 8136300 8147400 4444100 6982100 491220 9094100 3960300 4411600 3537700 10325000 9702100 8046200 7913200 2 2 2 2 2 2 2 2 2 2 2 437550000 197610000 239940000 3053 470 2862 17443;17444;17445 20945;20946 20946 2 DLNSDMDSILASLK Oxidation (M) 1536.7341 0.73413841 992 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 1 0 By MS/MS 3 0 1 1 72.367 71.996 3 0.011177 26088 20211116_3441_TMUAki_TMT10x_S_F3 57.788 43.882 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3054 992 2863 17446 20947 20947 1275 1 DLNSQADSLMTSSAFDTSQVK Oxidation (M) 2260.0165 0.016520865 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 1 0 By MS/MS 5 0 1 1 58.326 58.461 3 7.7826E-06 17015 20211116_3444_TMUAki_TMT10x_S_F5 80.98 71.192 3028700 5297100 57735 5346300 3534300 2747000 2647600 4296800 4159000 4195200 4393900 2820400 4943000 311990 5411800 3370100 2993600 2778700 4287500 4173200 4101500 4231300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3028700 5297100 57735 5346300 3534300 2747000 2647600 4296800 4159000 4195200 4393900 2820400 4943000 311990 5411800 3370100 2993600 2778700 4287500 4173200 4101500 4231300 2 2 2 2 2 2 2 2 2 2 2 576460000 0 576460000 3055 1663 2864 17447 20948;20949 20949 2224 2 DLNSQADSLMTSSAFDTSQVK Unmodified 2244.0216 0.021606243 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS 5 0 1 1 68.748 68.771 3 6.9017E-05 21277 20211116_3444_TMUAki_TMT10x_S_F5 66.845 50.539 2521100 4601900 60570 4581000 2753600 2165900 2391400 2199700 2090600 2450600 3141100 2347800 4294000 268720 4638800 2634900 2356200 2435300 2242300 2177300 2383000 2997500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2521100 4601900 60570 4581000 2753600 2165900 2391400 2199700 2090600 2450600 3141100 2347800 4294000 268720 4638800 2634900 2356200 2435300 2242300 2177300 2383000 2997500 1 1 1 1 1 1 1 1 1 1 1 376470000 0 376470000 3056 1663 2864 17448 20950 20950 1 DLNYCFSGMSDHR Oxidation (M) 1616.6348 0.6347755 894;1247 P31943;P55795 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 no no 0 0 1 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 37.814 38.048 3 0.00011332 11329 20211116_3446_TMUAki_TMT10x_S_F7 89.359 82.631 1813200 2831400 35217 3492100 4203300 3860000 2503000 2556600 2852300 2086100 2797100 1688500 2644400 204050 3521400 3989700 3880300 2638600 2651100 2884500 2056700 2700000 8 8 5 8 8 8 8 8 8 8 8 1511000 2302900 29676 2888100 3910300 3644100 2217800 2238900 2516400 1797400 2394900 1407100 2151000 186530 2916300 3708600 3634200 2347400 2334100 2542600 1773600 2314100 3 3 3 3 3 3 3 3 3 3 3 302180 528460 5541 604060 293010 215900 285210 317720 335920 288700 402150 281400 493390 17514 605100 281080 246180 291270 317030 341870 283150 385890 5 5 2 5 5 5 5 5 5 5 5 468020000 364520000 103490000 3057 894;1247 2865 17449;17450;17451;17452;17453;17454 20951;20952;20953;20954;20955;20956;20957;20958 20958 1091 8 DLNYCFSGMSDHR Unmodified 1600.6399 0.63986087 894;1247 P31943;P55795 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 no no 0 0 0 0 By MS/MS 7 0 1 1 45.305 45.81 3 2.2868E-08 14129 20211116_3446_TMUAki_TMT10x_S_F7 107.93 97.573 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3058 894;1247 2865 17455 20959 20959 1 DLPAIQPR Unmodified 908.50797 0.50796571 393 O94903 PROSC Proline synthase co-transcribed bacterial homolog protein yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 39.689 39.815 2 0.012894 11702 20211116_3430_TMUAki_TMT10x_P_F3 77.058 38.266 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3059 393 2866 17456;17457 20960;20961 20960 2 DLPDVQELITQVR Unmodified 1524.8148 0.814772 3116 Q9UHB9;Q9UHB9-4;Q9UHB9-2;Q9UHB9-3 SRP68 Signal recognition particle subunit SRP68 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 77.833 77.847 2 2.6392E-28 26204 20211116_3442_TMUAki_TMT10x_S_F4 217.45 160.72 9142000 16731000 102720 14293000 11235000 14219000 11672000 9938100 9624500 10313000 12548000 8512900 15603000 882970 14752000 10789000 14394000 11753000 10332000 9984600 10056000 12014000 2 2 2 2 2 2 2 2 2 2 2 4836900 8558900 57374 7378500 4546900 9504400 5748600 5160800 4970400 5458900 6889300 4504100 7982000 450420 7642500 4393500 9453700 5744200 5475300 5158700 5319200 6586500 1 1 1 1 1 1 1 1 1 1 1 4305100 8172200 45343 6914100 6687700 4714900 5922900 4777300 4654100 4853700 5659000 4008800 7620900 432550 7109500 6396000 4940300 6008600 4856400 4825900 4737300 5427900 1 1 1 1 1 1 1 1 1 1 1 2593500000 1511200000 1082300000 3060 3116 2867 17458;17459;17460;17461 20962;20963;20964;20965 20964 4 DLPEHAVLK Unmodified 1020.5604 0.56039521 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 By MS/MS By MS/MS 3.6 1.13 2 2 4 14 2 1 8 17 34.861 34.873 2;3 1.959E-05 8344 20211116_3442_TMUAki_TMT10x_S_F4 105.4 64.367 30310000 48629000 170920 47856000 43669000 42384000 35428000 33471000 35710000 32885000 39673000 28222000 45373000 2612800 48794000 41670000 43315000 36375000 34463000 36457000 32141000 38149000 29 29 14 29 29 29 29 29 29 29 29 12469000 19169000 50051 18940000 24060000 24431000 14285000 13358000 15022000 13107000 15557000 11610000 17886000 1232300 19420000 22826000 24301000 15024000 14133000 15269000 12811000 14990000 8 8 4 8 8 8 8 8 8 8 8 17841000 29461000 120870 28916000 19610000 17953000 21143000 20113000 20688000 19778000 24117000 16613000 27488000 1380600 29374000 18844000 19014000 21352000 20331000 21188000 19330000 23159000 21 21 10 21 21 21 21 21 21 21 21 4746200000 3079400000 1666800000 3061 1474 2868 17462;17463;17464;17465;17466;17467;17468;17469;17470;17471;17472;17473;17474;17475;17476;17477;17478;17479;17480;17481;17482;17483;17484;17485;17486 20966;20967;20968;20969;20970;20971;20972;20973;20974;20975;20976;20977;20978;20979;20980;20981;20982;20983;20984;20985;20986;20987;20988;20989;20990;20991;20992;20993;20994;20995;20996;20997;20998;20999;21000;21001;21002 20999 37 DLPELALDTPR Unmodified 1238.6507 0.65066678 1902 Q53EL6;Q53EL6-2 PDCD4 Programmed cell death protein 4 yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 61.307 61.113 2 4.331E-14 18859 20211116_3440_TMUAki_TMT10x_S_F2 152.67 121.22 19049000 31892000 209500 31801000 25846000 33375000 24291000 26586000 25502000 25163000 28198000 17738000 29759000 1869700 32472000 24756000 33751000 24758000 27331000 25987000 24634000 27118000 6 6 6 6 6 6 6 6 6 6 6 10166000 15904000 123260 16006000 13744000 22312000 12734000 13631000 12866000 12848000 14205000 9466000 14841000 1007800 16416000 13160000 22146000 12974000 14274000 13130000 12581000 13661000 3 3 3 3 3 3 3 3 3 3 3 8883100 15988000 86241 15795000 12102000 11063000 11556000 12955000 12637000 12315000 13993000 8271600 14918000 861930 16056000 11596000 11605000 11784000 13057000 12856000 12054000 13457000 3 3 3 3 3 3 3 3 3 3 3 2148300000 1352400000 795850000 3062 1902 2869 17487;17488;17489;17490;17491;17492 21003;21004;21005;21006;21007;21008;21009 21006 7 DLPESALR Unmodified 899.47125 0.47124585 892 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 By MS/MS By MS/MS 2.71 0.452 2 5 5 2 35.267 35.301 2 0.0017931 11225 20211116_3429_TMUAki_TMT10x_P_F2 107.9 61.232 383160 629530 4497.5 742980 372280 339490 366140 421150 440280 379110 531360 356800 587840 35806 743920 357080 372580 374000 422820 447900 371990 509770 2 2 2 2 2 2 2 2 2 2 2 38406 50556 1609.6 56983 68440 62664 44999 33546 41371 37465 42425 35771 47198 5104.8 57763 65132 62833 46758 35694 42284 36429 40893 1 1 1 1 1 1 1 1 1 1 1 344760 578970 2888 686000 303840 276830 321140 387610 398910 341640 488940 321020 540640 30701 686150 291950 309740 327250 387130 405610 335560 468870 1 1 1 1 1 1 1 1 1 1 1 20002000 655070 19347000 3063 892 2870 17493;17494;17495;17496;17497;17498;17499 21010;21011;21012;21013;21014;21015;21016 21010 7 DLPFETLEVEAK Unmodified 1389.7028 0.70276193 3021 Q9NYK5;Q9NYK5-2 MRPL39 39S ribosomal protein L39, mitochondrial yes no 0 0 0 0 By MS/MS 2 0 1 1 73.253 73.163 3 0.011512 23706 20211116_3440_TMUAki_TMT10x_S_F2 62.14 38.535 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3064 3021 2871 17500 21017 21017 1 DLPFIVSHR Unmodified 1082.5873 0.58727866 848 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 47.766 48.248 3 1.0803E-05 14635 20211116_3435_TMUAki_TMT10x_P_F7 110.76 86.601 1032700 1713200 26220 1947700 972260 918020 889600 1563600 1415100 1284300 1422100 961680 1599500 99394 1955000 931120 1013200 922950 1548800 1416900 1265800 1371600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1032700 1713200 26220 1947700 972260 918020 889600 1563600 1415100 1284300 1422100 961680 1599500 99394 1955000 931120 1013200 922950 1548800 1416900 1265800 1371600 2 2 1 2 2 2 2 2 2 2 2 179260000 0 179260000 3065 848 2872 17501;17502 21018;21019;21020 21018 3 DLPHFVR Unmodified 882.47119 0.47118627 2384 Q92989;Q92989-2 CLP1 Polyribonucleotide 5'-hydroxyl-kinase Clp1 yes no 0 0 0 0 By MS/MS By MS/MS 5.25 0.433 3 1 3 1 37.34 37.381 3 0.010266 8534 20211116_3444_TMUAki_TMT10x_S_F5 81.297 70.423 237690 382890 0 409670 329940 321400 268760 309710 340370 311100 323710 221290 357370 18203 414720 314640 332600 278030 315520 342540 303780 312790 2 2 0 2 2 2 2 2 2 2 2 73492 125330 0 127110 154300 156020 103800 93153 98135 96242 93756 68416 116950 5668.4 129980 146580 155740 107750 97977 99928 93868 90578 1 1 0 1 1 1 1 1 1 1 1 164200 257560 0 282570 175640 165380 164960 216550 242240 214860 229950 152880 240420 12534 284750 168070 176860 170280 217540 242620 209910 222210 1 1 0 1 1 1 1 1 1 1 1 134050000 91595000 42452000 3066 2384 2873 17503;17504;17505;17506 21021;21022;21023 21023 3 DLPLLLFR Unmodified 985.59605 0.59605244 201 O43175 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 0 By MS/MS By MS/MS 4.2 3.12 1 2 2 3 2 78.79 78.778 2 0.00032124 25789 20211116_3428_TMUAki_TMT10x_P_F1 186.67 117.29 14791000 28102000 7386.1 23815000 27960000 45780000 24118000 28660000 32687000 25933000 26857000 13771000 26206000 1339800 24926000 26708000 44898000 24930000 29922000 32672000 25440000 26088000 4 4 2 4 4 4 4 4 4 4 4 11782000 22060000 7386.1 18577000 22698000 41365000 20204000 23312000 26655000 21000000 21580000 10970000 20571000 1082800 19538000 21698000 40329000 20824000 24544000 26655000 20605000 20974000 3 3 2 3 3 3 3 3 3 3 3 3008900 6041700 0 5237800 5262700 4414300 3913300 5347600 6031500 4933400 5277200 2801400 5634500 257070 5387900 5010600 4568700 4105600 5377600 6016600 4835300 5114000 1 1 0 1 1 1 1 1 1 1 1 3707100000 3053200000 653870000 3067 201 2874 17507;17508;17509;17510;17511 21024;21025;21026;21027;21028 21024 5 DLPNIEVR Unmodified 954.51345 0.51344502 811 P26358;P26358-2;P26358-3 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 0 0 0 0 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 46.899 46.788 2 0.065751 14680 20211116_3430_TMUAki_TMT10x_P_F3 55.503 34.349 7049500 10846000 0 13818000 15099000 13116000 7999300 12533000 14305000 10596000 12160000 6563200 10132000 617910 13876000 14294000 13392000 8680500 12714000 14201000 10428000 11797000 2 2 0 2 2 2 2 2 2 2 2 3471800 4938300 0 6632200 12128000 9911600 5128900 6100900 7082600 5039100 5842600 3232100 4614300 350800 6695300 11449000 9809400 5628900 6363500 7075900 4965200 5674500 1 1 0 1 1 1 1 1 1 1 1 3577800 5908000 0 7185500 2970900 3204200 2870400 6432500 7222800 5556500 6317600 3331100 5517500 267110 7180600 2844800 3582300 3051600 6351000 7125400 5462900 6122400 1 1 0 1 1 1 1 1 1 1 1 230540000 146510000 84030000 3068 811 2875 17512;17513;17514;17515 21029;21030 21029 2 DLPPVSGSIIWAK Unmodified 1381.7606 0.76055158 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS 8 0 1 1 74.524 74.39 3 5.1245E-06 23554 20211116_3447_TMUAki_TMT10x_S_F8 98.105 78.861 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3069 1695 2876 17516 21031 21031 1 DLPRPSEVNETILRPLNVEPPLTDLQK Unmodified 3082.6663 0.66626385 2574 Q99459 CDC5L Cell division cycle 5-like protein yes yes 0 0 0 2 By MS/MS By MS/MS 7.2 0.748 1 2 2 2 3 72.363 72.43 4 3.3953E-42 24626 20211116_3435_TMUAki_TMT10x_P_F7 195.27 179.38 53083000 87223000 627990 82084000 64387000 76997000 66428000 54337000 54021000 58489000 66549000 49428000 81369000 4884200 84026000 61810000 78244000 66890000 56514000 55944000 56952000 63810000 14 14 9 14 14 14 14 14 14 14 14 21838000 32832000 482380 31476000 19804000 38172000 24900000 21276000 21132000 23060000 25649000 20336000 30631000 2123800 32307000 19139000 38094000 24874000 22538000 21824000 22448000 24603000 5 5 4 5 5 5 5 5 5 5 5 31245000 54391000 145610 50607000 44583000 38825000 41528000 33061000 32889000 35429000 40900000 29092000 50738000 2760400 51719000 42670000 40150000 42015000 33976000 34121000 34504000 39207000 9 9 5 9 9 9 9 9 9 9 9 6176500000 2785600000 3390800000 3070 2574 2877 17517;17518;17519;17520;17521 21032;21033;21034;21035;21036;21037;21038;21039;21040;21041;21042;21043;21044;21045 21033 14 DLPSADSVQYR Unmodified 1249.5939 0.59388018 2352 Q92621 NUP205 Nuclear pore complex protein Nup205 yes yes 0 0 0 0 By MS/MS 3 0 1 1 39.639 39.693 2 2.9352E-14 11784 20211116_3430_TMUAki_TMT10x_P_F3 183.72 136.37 145000 214390 3802.2 301600 487170 342710 193250 155440 183820 143760 208800 135040 200380 20357 302140 459960 342380 211090 167140 188300 140890 200650 1 1 1 1 1 1 1 1 1 1 1 145000 214390 3802.2 301600 487170 342710 193250 155440 183820 143760 208800 135040 200380 20357 302140 459960 342380 211090 167140 188300 140890 200650 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11009000 11009000 0 3071 2352 2878 17522 21046 21046 1 DLPSHTK Unmodified 796.40792 0.40791731 3043 Q9P013 CWC15 Spliceosome-associated protein CWC15 homolog yes yes 0 0 0 0 By MS/MS 4 0 1 1 28.416 28.46 3 0.01275 5742 20211116_3431_TMUAki_TMT10x_P_F4 71.296 43.122 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3072 3043 2879 17523 21047 21047 1 DLPVTEAVFSALVTGHAR Unmodified 1881.9949 0.99486163 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 6.2 2.64 1 2 2 2 3 78.216 78.219 3 5.268E-41 25053 20211116_3447_TMUAki_TMT10x_S_F8 211.78 178.63 21391000 35087000 322150 35283000 26410000 28346000 25736000 21165000 17435000 20770000 26488000 19920000 32741000 2123300 35876000 25324000 29143000 25883000 21870000 18422000 20301000 25272000 5 5 4 5 5 5 5 5 5 5 5 8516300 13340000 146560 13591000 8128300 14988000 9818000 8234200 6942000 7899200 10383000 7930600 12448000 837220 13868000 7845200 15031000 9781400 8702700 7310300 7728600 9910000 2 2 2 2 2 2 2 2 2 2 2 12875000 21747000 175590 21692000 18282000 13358000 15918000 12931000 10493000 12870000 16105000 11989000 20292000 1286100 22008000 17479000 14113000 16102000 13167000 11112000 12572000 15362000 3 3 2 3 3 3 3 3 3 3 3 13660000000 5416100000 8243500000 3073 1018 2880 17524;17525;17526;17527;17528 21048;21049;21050;21051;21052 21052 5 DLQANVEHLVQK Unmodified 1392.7361 0.73612775 552 P08237;P08237-3;P08237-2 PFKM ATP-dependent 6-phosphofructokinase, muscle type yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 52.444 52.598 3 4.9482E-06 14618 20211116_3444_TMUAki_TMT10x_S_F5 106.32 82.337 10810000 18108000 163920 20429000 16704000 20385000 12853000 16659000 15495000 14836000 16023000 10066000 16905000 1131500 20676000 15930000 20686000 13320000 17072000 15667000 14565000 15441000 4 4 4 4 4 4 4 4 4 4 4 5494400 8838500 61857 10363000 11066000 14948000 7833400 8716900 8293300 7805000 8240300 5116300 8253000 591210 10533000 10533000 14805000 8129100 9149900 8415000 7660400 7950700 2 2 2 2 2 2 2 2 2 2 2 5315100 9269200 102070 10066000 5638200 5437500 5019500 7942500 7201800 7031100 7783200 4949600 8652200 540300 10143000 5396800 5881100 5191400 7921700 7251700 6904500 7490200 2 2 2 2 2 2 2 2 2 2 2 751550000 271450000 480110000 3074 552 2881 17529;17530;17531;17532 21053;21054;21055;21056;21057 21057 5 DLQDELAGNSEQR Unmodified 1473.6696 0.66956432 3219 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 0 By MS/MS 1 0 1 1 42.128 41.947 3 0.0006597 12834 20211116_3439_TMUAki_TMT10x_S_F1 77.633 63.549 458170 718470 2897.6 916170 366980 275910 264530 517970 542810 505530 605140 426620 671150 39409 911110 349480 326020 282300 514050 542250 494240 581820 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 458170 718470 2897.6 916170 366980 275910 264530 517970 542810 505530 605140 426620 671150 39409 911110 349480 326020 282300 514050 542250 494240 581820 1 1 1 1 1 1 1 1 1 1 1 16845000 0 16845000 3075 3219 2882 17533 21058 21058 1 DLQEFIPLINQITAK Unmodified 1741.9614 0.96143623 223 O43592 XPOT Exportin-T yes yes 0 0 0 0 By MS/MS By MS/MS 6.36 1.87 1 4 3 3 7 4 81.329 81.331 2;3 7.9218E-30 26345 20211116_3447_TMUAki_TMT10x_S_F8 210.38 171.07 21208000 36106000 230100 34734000 26518000 29674000 30040000 17772000 17074000 20926000 26315000 19747000 33686000 1538400 35456000 25517000 30275000 29885000 18765000 18265000 20307000 25099000 8 8 3 8 8 8 8 8 8 8 8 10065000 15379000 0 15356000 10124000 16825000 11471000 8694500 7745200 9566000 11504000 9370400 14350000 653490 15689000 9729300 16867000 11450000 9276400 8175900 9306700 10981000 3 3 0 3 3 3 3 3 3 3 3 11143000 20727000 230100 19379000 16394000 12849000 18569000 9077800 9328300 11360000 14811000 10377000 19335000 884880 19767000 15788000 13408000 18435000 9488300 10089000 11001000 14118000 5 5 3 5 5 5 5 5 5 5 5 3944900000 1644200000 2300700000 3076 223 2883 17534;17535;17536;17537;17538;17539;17540;17541;17542;17543;17544 21059;21060;21061;21062;21063;21064;21065;21066;21067;21068;21069;21070 21070 12 DLQEVIELTK Unmodified 1186.6445 0.64451877 371 O75940 SMNDC1 Survival of motor neuron-related-splicing factor 30 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 1.12 2 2 2 2 4 4 74.152 74.006 2;3 6.4808E-05 25902 20211116_3430_TMUAki_TMT10x_P_F3 129.82 78.032 18237000 27883000 107390 29499000 19428000 24349000 18835000 15539000 16244000 17885000 20169000 16981000 26024000 1546300 29903000 18615000 24925000 19056000 16314000 16778000 17371000 19335000 4 4 2 4 4 4 4 4 4 4 4 9953700 14799000 88259 15694000 10312000 16922000 10297000 8131600 9236000 9868800 10512000 9267900 13813000 838250 15965000 9888000 16966000 10413000 8763300 9487800 9566900 10101000 2 2 1 2 2 2 2 2 2 2 2 8283600 13084000 19130 13806000 9116200 7427000 8537600 7407300 7008100 8016600 9656700 7713000 12211000 708010 13938000 8727100 7959100 8643000 7550500 7290500 7804400 9233500 2 2 1 2 2 2 2 2 2 2 2 1047300000 517650000 529690000 3077 371 2884 17545;17546;17547;17548;17549;17550;17551;17552 21071;21072;21073;21074;21075;21076;21077;21078 21072 8 DLQGLTVEHAIDSFR Unmodified 1699.8529 0.85294842 207 O43290 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 65.769 65.7 3 1.58E-06 21027 20211116_3433_TMUAki_TMT10x_P_F5 93.495 74.42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3078 207 2885 17553;17554;17555 21079;21080;21081 21079 3 DLQGRDEQSEEK Unmodified 1432.643 0.64301522 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 1 By MS/MS 2 0 1 1 29.104 28.87 3 0.00012159 7119 20211116_3429_TMUAki_TMT10x_P_F2 94.717 67.711 127730 217280 2038.7 216690 179320 223500 145480 101560 112540 109240 133070 118950 202740 13213 221200 171210 224530 148320 109650 116660 106370 127730 1 1 1 1 1 1 1 1 1 1 1 127730 217280 2038.7 216690 179320 223500 145480 101560 112540 109240 133070 118950 202740 13213 221200 171210 224530 148320 109650 116660 106370 127730 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7442900 7442900 0 3079 934 2886 17556 21082 21082 1 DLQGRPSSFFGMDRPPK Oxidation (M) 1949.9418 0.9417802 2804 Q9H488 POFUT1 GDP-fucose protein O-fucosyltransferase 1 yes yes 0 0 1 2 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 42.346 42.366 4 0.00014167 12958 20211116_3439_TMUAki_TMT10x_S_F1 78.78 66.988 11292000 18739000 141440 20462000 17885000 19974000 13298000 15875000 16157000 14395000 16437000 10515000 17492000 1122700 20746000 17040000 20286000 13817000 16303000 16322000 14120000 15848000 5 5 3 5 5 5 5 5 5 5 5 6114900 10163000 100280 11259000 11671000 14753000 7944900 8573600 8888100 7680400 9185400 5694300 9486800 678250 11461000 11103000 14675000 8282900 9002200 9011400 7537900 8851600 2 2 2 2 2 2 2 2 2 2 2 5177100 8576000 41162 9203200 6213500 5221400 5352800 7301400 7269300 6714700 7251700 4820400 8004700 444490 9284900 5936200 5611600 5533900 7301000 7310800 6582100 6996000 3 3 1 3 3 3 3 3 3 3 3 906800000 626020000 280780000 3080 2804 2887 17557;17558;17559;17560 21083;21084;21085;21086;21087 21086 2959 5 DLQHPNEFIR Unmodified 1267.6309 0.63093439 1206 P53618 COPB1 Coatomer subunit beta yes yes 0 0 0 0 By MS/MS By MS/MS 4.14 0.639 1 4 2 2 5 35.637 35.639 3 9.894E-06 9798 20211116_3431_TMUAki_TMT10x_P_F4 136.96 95.252 3296900 5626300 50092 5701800 7408500 6746700 4879000 8113000 8157800 5477200 6304500 3070100 5250200 377600 5827000 7043000 6839400 5182700 8100800 8089900 5457900 6139100 6 6 6 6 6 6 6 6 6 6 6 1657600 2800100 23966 2708900 5676300 5406000 3274300 4989000 4720900 3245200 3457800 1543600 2612400 216050 2810300 5383800 5331500 3491600 5041300 4694600 3241300 3374700 2 2 2 2 2 2 2 2 2 2 2 1639300 2826200 26126 2992800 1732200 1340700 1604700 3123900 3436900 2232000 2846700 1526500 2637700 161560 3016700 1659200 1507800 1691100 3059500 3395300 2216700 2764400 4 4 4 4 4 4 4 4 4 4 4 627790000 373090000 254700000 3081 1206 2888 17561;17562;17563;17564;17565;17566;17567 21088;21089;21090;21091;21092;21093;21094;21095 21088 8 DLQLQCEANVR Unmodified 1344.6456 0.64559818 2789 Q9H2G2;Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 39.708 39.761 2 1.8535E-17 13490 20211116_3441_TMUAki_TMT10x_S_F3 193.21 169.22 179750 274810 0 322800 447030 378730 213080 181850 203170 196100 235650 167320 256610 13376 326750 422410 377950 228060 195260 208270 190940 226320 1 1 0 1 1 1 1 1 1 1 1 179750 274810 0 322800 447030 378730 213080 181850 203170 196100 235650 167320 256610 13376 326750 422410 377950 228060 195260 208270 190940 226320 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15026000 15026000 0 3082 2789 2889 17568;17569 21096;21097 21097 2 DLQMVNISLR Oxidation (M) 1203.6282 0.6281572 2593 Q99623;Q99623-2 PHB2 Prohibitin-2 yes no 0 0 1 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 51.878 52.035 2 0.00091047 15636 20211116_3442_TMUAki_TMT10x_S_F4 85.807 55.01 17878000 29099000 12615 28851000 26004000 31985000 19552000 29420000 30216000 26076000 25866000 16646000 27151000 1547400 29497000 24768000 32334000 20500000 29942000 30119000 25605000 25087000 6 6 3 6 6 6 6 6 6 6 6 9187200 14569000 12615 14314000 16321000 22529000 11700000 14659000 14942000 13243000 13092000 8554300 13593000 873360 14743000 15534000 22267000 12210000 15259000 14993000 12992000 12687000 3 3 3 3 3 3 3 3 3 3 3 8691000 14530000 0 14538000 9682800 9456800 7852200 14762000 15275000 12833000 12774000 8091700 13558000 674020 14754000 9234300 10067000 8290300 14683000 15126000 12613000 12400000 3 3 0 3 3 3 3 3 3 3 3 3535700000 2060800000 1474900000 3083 2593 2890 17570;17571;17572;17573;17574;17575 21098;21099;21100;21101;21102;21103;21104 21101 2827 7 DLQMVNISLR Unmodified 1187.6332 0.63324258 2593 Q99623;Q99623-2 PHB2 Prohibitin-2 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 61.728 62.034 2 0.00011481 18755 20211116_3445_TMUAki_TMT10x_S_F6 121.36 77.553 40218000 71622000 147620 70042000 51492000 55373000 46524000 37604000 31472000 38257000 48062000 37443000 66825000 3022400 71347000 49218000 56916000 46985000 39149000 33265000 37336000 45850000 5 5 1 5 5 5 5 5 5 5 5 17044000 29837000 0 29451000 23772000 34507000 23471000 16233000 13533000 16402000 19349000 15869000 27840000 1326600 30148000 22774000 34430000 23516000 17432000 14409000 16013000 18486000 2 2 0 2 2 2 2 2 2 2 2 23174000 41785000 147620 40591000 27721000 20867000 23052000 21371000 17939000 21854000 28713000 21575000 38985000 1695800 41199000 26444000 22486000 23469000 21717000 18856000 21324000 27364000 3 3 1 3 3 3 3 3 3 3 3 2685900000 1319000000 1366900000 3084 2593 2890 17576;17577;17578;17579 21105;21106;21107;21108;21109 21107 5 DLQNVNITLR Unmodified 1184.6513 0.65133548 924 P35232;P35232-2 PHB Prohibitin yes no 0 0 0 0 By MS/MS By MS/MS 5 1.22 1 2 2 2 1 3 5 51.464 51.661 2 2.1563E-19 15292 20211116_3433_TMUAki_TMT10x_P_F5 254.57 199.96 80032000 126530000 1200400 146160000 121950000 122970000 84031000 104000000 97131000 87082000 104870000 74525000 118140000 8210100 147370000 116050000 126280000 87625000 106190000 98516000 85746000 100920000 10 10 6 10 10 10 10 10 10 10 10 46260000 70172000 1010400 82272000 86935000 92268000 53690000 59108000 54762000 47427000 58422000 43081000 65523000 5345000 83226000 82583000 92635000 56231000 61421000 55793000 46801000 56244000 5 5 4 5 5 5 5 5 5 5 5 33771000 56362000 190000 63885000 35020000 30700000 30341000 44892000 42370000 39656000 46445000 31445000 52620000 2865100 64145000 33464000 33641000 31393000 44770000 42722000 38946000 44678000 5 5 2 5 5 5 5 5 5 5 5 9016400000 4823600000 4192900000 3085 924 2891 17580;17581;17582;17583;17584;17585;17586;17587 21110;21111;21112;21113;21114;21115;21116;21117;21118;21119;21120 21111 11 DLQPFPTCQALVYR Unmodified 1706.845 0.84502627 1679 Q14137;Q14137-2 BOP1 Ribosome biogenesis protein BOP1 yes no 0 0 0 0 By MS/MS 7 0 1 1 64.412 65.055 2 1.7183E-07 21456 20211116_3435_TMUAki_TMT10x_P_F7 106.01 44.654 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3086 1679 2892 17588 21121 21121 1 DLQSNVEHLTEK Unmodified 1411.6943 0.69432251 1487 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 By MS/MS 4 0 1 1 45.893 46.095 3 0.001687 13214 20211116_3442_TMUAki_TMT10x_S_F4 70.889 54.257 1162500 1957300 42601 2451000 975990 1028500 936770 1807500 2005900 1613400 1871900 1082800 1828200 133470 2444300 937420 1153000 985350 1792600 1989100 1583700 1809900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1162500 1957300 42601 2451000 975990 1028500 936770 1807500 2005900 1613400 1871900 1082800 1828200 133470 2444300 937420 1153000 985350 1792600 1989100 1583700 1809900 1 1 1 1 1 1 1 1 1 1 1 49199000 0 49199000 3087 1487 2893 17589 21122 21122 1 DLREVFSK Unmodified 992.5291 0.52909508 1389 P62995;P62995-3 TRA2B Transformer-2 protein homolog beta yes no 0 0 0 1 By MS/MS By MS/MS 7 0.707 1 2 1 1 3 49.729 50.157 3 0.00044908 15400 20211116_3435_TMUAki_TMT10x_P_F7 132.88 76.216 8843100 13168000 124970 16887000 18617000 13640000 9483100 14807000 15043000 11736000 14438000 8234700 12301000 975430 16916000 17628000 14122000 10269000 14904000 15039000 11588000 13947000 3 3 2 3 3 3 3 3 3 3 3 3619700 5211800 39145 6924800 13235000 9698700 5095700 6304200 6641100 4893500 5932000 3370600 4869500 471260 6984900 12488000 9633000 5642200 6538700 6663400 4837400 5744300 1 1 1 1 1 1 1 1 1 1 1 5223400 7956600 85826 9962300 5381600 3941600 4387400 8503000 8401800 6842100 8506500 4864000 7431900 504170 9931500 5139600 4489300 4626600 8365300 8375500 6750800 8202600 2 2 1 2 2 2 2 2 2 2 2 1253800000 648260000 605580000 3088 1389 2894 17590;17591;17592;17593 21123;21124;21125;21126 21123 4 DLREVFSR Unmodified 1020.5352 0.53524309 1650 Q13595;Q13595-4;Q13595-3;Q13595-2 TRA2A Transformer-2 protein homolog alpha yes no 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 42.873 43.039 3 0.00025544 11014 20211116_3445_TMUAki_TMT10x_S_F6 167.12 114.34 504490 859080 8323.3 1059700 602370 429230 396610 880300 831850 758230 851370 469790 802370 50954 1057500 572910 486300 426530 868610 827910 745550 820690 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 504490 859080 8323.3 1059700 602370 429230 396610 880300 831850 758230 851370 469790 802370 50954 1057500 572910 486300 426530 868610 827910 745550 820690 1 1 1 1 1 1 1 1 1 1 1 59641000 0 59641000 3089 1650 2895 17594;17595 21127;21128 21127 2 DLRPGDTVTITCSSYR Unmodified 1839.8785 0.87851124 1958 Q5ZPR3;Q5ZPR3-2;Q5ZPR3-3;Q5ZPR3-4 CD276 CD276 antigen yes no 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 42.19 42.293 3 2.1439E-52 10557 20211116_3445_TMUAki_TMT10x_S_F6 257.72 247.56 4036500 6326100 57053 8071600 6765300 6595800 4536000 4618600 4715300 4028600 5213300 3758700 5909500 410690 8089000 6433300 6766000 4723200 4778000 4806800 3958800 5013600 5 5 4 5 5 5 5 5 5 5 5 2764900 4391300 54299 5455400 5870200 5816300 3647900 3386900 3489600 3009200 3643700 2574800 4101500 323330 5495600 5576000 5848400 3811500 3554800 3562500 2954500 3510200 3 3 3 3 3 3 3 3 3 3 3 1271600 1934800 2754.3 2616200 895100 779520 888170 1231800 1225700 1019300 1569500 1183900 1808000 87366 2593400 857260 917580 911720 1223200 1244300 1004300 1503400 2 2 1 2 2 2 2 2 2 2 2 610080000 350890000 259190000 3090 1958 2896 17596;17597;17598;17599 21129;21130;21131;21132;21133 21133 5 DLSAAGIGLLAAATQSLSMPASLGR Oxidation (M) 2386.2526 0.25260923 1026 P43243 MATR3 Matrin-3 yes yes 0 0 1 0 By MS/MS By MS/MS 4.57 1.5 1 2 2 8 9 2 4 14 14 69.58 69.622 2;3;4 1.0332E-72 27367 20211116_3431_TMUAki_TMT10x_P_F4 249.71 233.58 28463000 49073000 177660 45139000 32478000 56735000 33936000 40226000 39972000 40898000 39465000 26503000 45776000 1396100 46500000 31183000 56711000 34534000 41752000 40382000 39916000 38086000 31 31 14 31 31 31 31 31 31 31 31 19477000 32570000 119180 30845000 18557000 42655000 20692000 27635000 27343000 27088000 26592000 18136000 30385000 915230 31765000 17850000 42388000 21083000 28839000 27499000 26478000 25676000 13 13 7 13 13 13 13 13 13 13 13 8985900 16503000 58477 14294000 13921000 14079000 13244000 12591000 12629000 13811000 12873000 8367000 15391000 480820 14735000 13333000 14323000 13451000 12913000 12883000 13438000 12411000 18 18 7 18 18 18 18 18 18 18 18 117030000000 70087000000 46943000000 3091 1026 2897 17600;17601;17602;17603;17604;17605;17606;17607;17608;17609;17610;17611;17612;17613;17614;17615;17616;17617;17618;17619;17620;17621;17622;17623;17624;17625;17626;17627 21134;21135;21136;21137;21138;21139;21140;21141;21142;21143;21144;21145;21146;21147;21148;21149;21150;21151;21152;21153;21154;21155;21156;21157;21158;21159;21160;21161;21162;21163;21164;21165;21166;21167 21140 1322 34 DLSAAGIGLLAAATQSLSMPASLGR Unmodified 2370.2577 0.25769461 1026 P43243 MATR3 Matrin-3 yes yes 0 0 0 0 By MS/MS By MS/MS 5.1 0.7 4 10 6 11 9 83.918 83.92 2;3;4 4.7628E-214 26854 20211116_3444_TMUAki_TMT10x_S_F5 439.02 415.88 19587000 31624000 370770 30677000 21591000 27176000 25069000 15167000 14235000 17665000 22914000 18239000 29505000 1233500 31310000 20805000 27631000 24911000 16102000 15064000 17149000 21836000 25 25 13 25 25 25 25 25 24 25 25 9973300 15040000 20001 14602000 10069000 18780000 11990000 9150500 8343500 10592000 11885000 9285900 14033000 226780 14990000 9700600 18657000 11949000 9832700 8573700 10285000 11356000 12 12 5 12 12 12 12 12 11 12 12 9613900 16583000 350770 16075000 11522000 8396500 13079000 6016700 5891900 7072400 11029000 8953600 15472000 1006700 16320000 11104000 8973900 12963000 6269000 6490800 6863800 10480000 13 13 8 13 13 13 13 13 13 13 13 35103000000 14161000000 20941000000 3092 1026 2897 17628;17629;17630;17631;17632;17633;17634;17635;17636;17637;17638;17639;17640;17641;17642;17643;17644;17645;17646;17647 21168;21169;21170;21171;21172;21173;21174;21175;21176;21177;21178;21179;21180;21181;21182;21183;21184;21185;21186;21187;21188;21189;21190;21191;21192;21193;21194;21195 21190 28 DLSAGAVSAVQCIANPIK Unmodified 1812.9404 0.94038322 2054 Q7L266 ASRGL1 Isoaspartyl peptidase/L-asparaginase;Isoaspartyl peptidase/L-asparaginase alpha chain;Isoaspartyl peptidase/L-asparaginase beta chain yes yes 0 0 0 0 By MS/MS 8 0 1 1 71.919 71.965 3 2.0571E-15 23100 20211116_3436_TMUAki_TMT10x_P_F8 132.84 113 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3093 2054 2898 17648 21196 21196 1 DLSGMFTTESR Oxidation (M) 1258.55 0.54996646 1558 Q10570 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 0 0 1 0 By MS/MS 3 0 1 1 39.835 39.888 2 0.012018 11706 20211116_3430_TMUAki_TMT10x_P_F3 65.933 40.196 113320 153170 0 187420 253400 224510 128970 109210 130810 101160 138060 105500 143050 10125 189340 239760 223840 137380 116610 133250 99131 132960 1 1 0 1 1 1 1 1 1 1 1 113320 153170 0 187420 253400 224510 128970 109210 130810 101160 138060 105500 143050 10125 189340 239760 223840 137380 116610 133250 99131 132960 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9652700 9652700 0 3094 1558 2899 17649 21197 21197 2099 1 DLSHIGDAVVISCAK Unmodified 1583.7977 0.79774172 635 P12004 PCNA Proliferating cell nuclear antigen yes yes 0 0 0 0 By MS/MS By MS/MS 5.62 1.15 1 1 3 5 3 7 6 56.871 57.077 2;3;4 1.0561E-51 16670 20211116_3445_TMUAki_TMT10x_S_F6 292.35 249.75 87783000 143180000 2664200 158270000 106880000 117340000 86993000 82801000 82432000 79909000 102960000 81754000 133660000 9956600 159780000 102140000 121290000 89139000 85843000 84788000 78163000 98689000 16 16 12 16 16 16 16 16 16 16 16 38757000 61179000 528790 64268000 56557000 71238000 41761000 37219000 35996000 35990000 44143000 36090000 57098000 3885200 65450000 53885000 71378000 42955000 39521000 37161000 35200000 42331000 8 8 5 8 8 8 8 8 8 8 8 49026000 82001000 2135400 93997000 50320000 46105000 45232000 45582000 46436000 43920000 58820000 45664000 76560000 6071400 94329000 48251000 49911000 46184000 46322000 47627000 42963000 56358000 8 8 7 8 8 8 8 8 8 8 8 23227000000 10614000000 12613000000 3095 635 2900 17650;17651;17652;17653;17654;17655;17656;17657;17658;17659;17660;17661;17662 21198;21199;21200;21201;21202;21203;21204;21205;21206;21207;21208;21209;21210;21211;21212;21213;21214 21213 17 DLSLDDFK Unmodified 951.45493 0.45492709 862 P30048;P30048-2 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 64.404 64.205 2 0.00062468 20700 20211116_3442_TMUAki_TMT10x_S_F4 137 79.444 45220000 67869000 613640 113600000 52675000 47247000 38408000 33505000 38612000 37215000 55069000 42109000 63500000 4425400 111670000 50186000 51917000 39712000 34870000 39856000 36194000 52613000 5 5 5 5 5 5 5 5 5 5 5 18280000 26106000 191650 42933000 36501000 31645000 20077000 12849000 14744000 14657000 20395000 17021000 24422000 1949300 42441000 34598000 32511000 21059000 14067000 15433000 14240000 19499000 2 2 2 2 2 2 2 2 2 2 2 26941000 41763000 421990 70671000 16174000 15603000 18331000 20656000 23868000 22559000 34674000 25088000 39078000 2476100 69231000 15588000 19405000 18653000 20803000 24423000 21953000 33114000 3 3 3 3 3 3 3 3 3 3 3 2463000000 1371500000 1091500000 3096 862 2901 17663;17664;17665;17666;17667;17668 21215;21216;21217;21218;21219;21220;21221 21220 7 DLSLEEIQK Unmodified 1073.5605 0.56045479 698;2389 P16949;P16949-2;Q93045;Q93045-2 STMN1;STMN2 Stathmin;Stathmin-2 no no 0 0 0 0 By MS/MS By MS/MS 3.08 1.11 1 3 3 4 1 7 5 56.224 56.109 2;3 1.586E-10 19565 20211116_3441_TMUAki_TMT10x_S_F3 219.51 138.31 106160000 147250000 1385700 235970000 200730000 146680000 100700000 110240000 116230000 89856000 130060000 98849000 137740000 10806000 233120000 190000000 154120000 107860000 113320000 118060000 88598000 125030000 13 13 5 13 13 13 13 13 13 13 13 64843000 87480000 332250 138130000 171310000 122120000 70878000 70247000 72841000 57312000 79682000 60376000 81817000 6932300 137100000 161740000 124230000 77206000 73654000 74260000 56507000 76654000 9 9 3 9 9 9 9 9 9 9 9 41314000 59774000 1053400 97839000 29426000 24557000 29824000 39996000 43392000 32544000 50374000 38473000 55918000 3873900 96028000 28265000 29884000 30651000 39663000 43798000 32091000 48377000 4 4 2 4 4 4 4 4 4 4 4 13338000000 7452700000 5885600000 3097 698;2389 2902 17669;17670;17671;17672;17673;17674;17675;17676;17677;17678;17679;17680 21222;21223;21224;21225;21226;21227;21228;21229;21230;21231;21232;21233;21234;21235;21236;21237 21233 16 DLSLEEIQKK Unmodified 1201.6554 0.65541781 698;2389 P16949;P16949-2;Q93045;Q93045-2 STMN1;STMN2 Stathmin;Stathmin-2 no no 0 0 0 1 By MS/MS By MS/MS 5 0.707 1 2 1 2 2 50.278 50.436 3 7.0537E-05 14979 20211116_3442_TMUAki_TMT10x_S_F4 88.338 62.22 21880000 34200000 329950 41242000 63668000 50195000 31587000 35924000 35808000 28050000 36734000 20374000 31939000 2654400 41710000 60258000 50262000 33848000 37010000 36277000 27720000 35407000 5 5 4 5 5 5 5 5 5 5 5 16429000 26404000 296590 30734000 57543000 44303000 26538000 26494000 27273000 20618000 27448000 15299000 24654000 2161900 31251000 54410000 43896000 28563000 27660000 27720000 20378000 26473000 4 4 3 4 4 4 4 4 4 4 4 5451200 7795700 33365 10507000 6124900 5891900 5048700 9430400 8535100 7432500 9286000 5075800 7284300 492470 10459000 5847800 6366400 5285300 9349800 8557100 7341200 8934600 1 1 1 1 1 1 1 1 1 1 1 1478100000 905600000 572540000 3098 698;2389 2903 17681;17682;17683;17684 21238;21239;21240;21241;21242;21243 21242 6 DLSLLSHGGR Unmodified 1053.5567 0.55670682 1547 Q08257;Q08257-2 CRYZ Quinone oxidoreductase yes no 0 0 0 0 By MS/MS 6 0 1 1 38.051 38.215 3 0.0032732 9052 20211116_3445_TMUAki_TMT10x_S_F6 69.672 53.161 137000 203960 0 251990 131840 97786 129180 143730 143710 138340 162940 127560 190500 10912 251370 126320 110160 131620 143660 146250 135330 156590 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 137000 203960 0 251990 131840 97786 129180 143730 143710 138340 162940 127560 190500 10912 251370 126320 110160 131620 143660 146250 135330 156590 1 1 0 1 1 1 1 1 1 1 1 5758700 0 5758700 3099 1547 2904 17685 21244 21244 1 DLSSHQLNEFLAQTLQR Unmodified 1999.0123 0.012302606 589 P09960;P09960-2;P09960-4;P09960-3 LTA4H Leukotriene A-4 hydrolase yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 70.292 70.476 3 1.2084E-21 23799 20211116_3435_TMUAki_TMT10x_P_F7 166.59 133.38 12871000 21507000 130710 22921000 13919000 18874000 14940000 14046000 14334000 14823000 15885000 11985000 20073000 1137700 23223000 13375000 19368000 15082000 14548000 14664000 14445000 15276000 4 4 2 4 4 4 4 4 4 4 4 6806300 11226000 130710 11601000 7574000 12843000 8018500 7804000 7922800 8194900 8020900 6338300 10476000 696860 11827000 7281400 12893000 8107300 8200500 8067700 7987500 7734500 2 2 2 2 2 2 2 2 2 2 2 6065200 10281000 0 11320000 6344800 6031000 6921300 6241700 6411200 6628200 7864400 5646700 9596900 440870 11396000 6093900 6475000 6974700 6347000 6596200 6457500 7541500 2 2 0 2 2 2 2 2 2 2 2 2433100000 918570000 1514600000 3100 589 2905 17686;17687;17688 21245;21246;21247;21248 21245 4 DLSSPSQYDTGVALTGLSCFVTPDLAR Unmodified 2869.3804 0.38038852 120 O14617;O14617-2;O14617-5;O14617-4 AP3D1 AP-3 complex subunit delta-1 yes no 0 0 0 0 By MS/MS 7 0 1 1 79.859 79.899 3 2.8896E-09 28226 20211116_3446_TMUAki_TMT10x_S_F7 97.063 83.407 1147000 1944400 75862 2061300 1490800 1717200 1776000 900470 1170200 1257000 1369300 1068500 1814800 170610 2089500 1441200 1752300 1767900 967430 1224100 1213000 1314800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1147000 1944400 75862 2061300 1490800 1717200 1776000 900470 1170200 1257000 1369300 1068500 1814800 170610 2089500 1441200 1752300 1767900 967430 1224100 1213000 1314800 1 1 1 1 1 1 1 1 1 1 1 601600000 0 601600000 3101 120 2906 17689 21249 21249 1 DLSSVQTLLTK Unmodified 1203.6711 0.67106787 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.4 0.49 3 2 2 3 70.439 70.835 2;3 1.3703E-15 22033 20211116_3447_TMUAki_TMT10x_S_F8 181.68 116.84 3303400 5382600 0 5126200 4319200 7018100 4390500 3775500 3596900 3937600 4045400 3075600 5021600 268100 5276000 4141900 6960000 4425200 4007200 3709900 3839000 3888600 1 1 0 1 1 1 1 1 1 1 1 3303400 5382600 0 5126200 4319200 7018100 4390500 3775500 3596900 3937600 4045400 3075600 5021600 268100 5276000 4141900 6960000 4425200 4007200 3709900 3839000 3888600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 526460000 526460000 0 3102 1663 2907 17690;17691;17692;17693;17694 21250;21251;21252;21253;21254 21254 5 DLSTIEPLK Unmodified 1014.5597 0.55972651 977 P39687;O43423;O95626 ANP32A;ANP32C;ANP32D Acidic leucine-rich nuclear phosphoprotein 32 family member A;Acidic leucine-rich nuclear phosphoprotein 32 family member C;Acidic leucine-rich nuclear phosphoprotein 32 family member D yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.745 1 2 3 4 2 56.977 57.019 2;3 6.1218E-06 17228 20211116_3431_TMUAki_TMT10x_P_F4 162.97 0 84573000 132880000 258820 152840000 140840000 135080000 93257000 136320000 139850000 120320000 127150000 78744000 124070000 7515400 154250000 133830000 138730000 98525000 138060000 139780000 118170000 123050000 11 11 4 11 11 11 11 11 11 11 11 37305000 55478000 23751 65633000 86028000 88663000 48098000 59762000 60638000 52367000 54381000 34733000 51805000 3583500 66583000 81521000 88254000 51159000 61999000 60918000 51449000 52654000 4 4 1 4 4 4 4 4 4 4 4 47268000 77404000 235070 87207000 54808000 46416000 45159000 76555000 79210000 67953000 72773000 44011000 72262000 3932000 87663000 52304000 50479000 47365000 76057000 78864000 66721000 70401000 7 7 3 7 7 7 7 7 7 7 7 3903700000 2298000000 1605600000 3103 977 2908 17695;17696;17697;17698;17699;17700 21255;21256;21257;21258;21259;21260;21261;21262;21263;21264;21265;21266 21256 12 DLSTLLTMFGLPQ Oxidation (M) 1450.7378 0.73776723 1138 P50542;P50542-3;P50542-4;P50542-2 PEX5 Peroxisomal targeting signal 1 receptor yes no 0 0 1 0 By MS/MS 8 0 2 2 84.791 84.794 2;3 2.2305E-06 28335 20211116_3436_TMUAki_TMT10x_P_F8 110.66 85.87 461520 895040 573.23 745030 442160 1070500 613250 607100 673210 748540 635230 429700 834610 35645 775520 428110 1060100 614950 644880 680900 725240 613960 2 2 1 2 2 2 2 2 2 2 2 461520 895040 573.23 745030 442160 1070500 613250 607100 673210 748540 635230 429700 834610 35645 775520 428110 1060100 614950 644880 680900 725240 613960 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23082000 23082000 0 3104 1138 2909 17701;17702 21267;21268 21267 1503 2 DLSTVEALQNLK Unmodified 1329.714 0.71399532 2666 Q9BTT0;Q9BTT0-3 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E yes no 0 0 0 0 By MS/MS By MS/MS 5.22 1.31 2 4 4 4 4 10 8 69.822 69.894 2;3 2.4321E-48 24037 20211116_3446_TMUAki_TMT10x_S_F7 304.63 227.95 163990000 259590000 937240 302190000 192180000 200680000 167080000 136870000 148510000 146550000 183970000 152680000 242390000 13536000 303750000 183610000 209260000 170220000 142670000 153160000 142730000 176380000 20 20 10 20 20 20 20 20 20 20 20 82277000 123720000 386580 147140000 113590000 137620000 95905000 65340000 72225000 69217000 86629000 76606000 115530000 6982700 148310000 108460000 139160000 97473000 70197000 75024000 67441000 83122000 10 10 6 10 10 10 10 10 10 10 10 81708000 135880000 550670 155050000 78589000 63055000 71180000 71530000 76286000 77338000 97346000 76077000 126860000 6553300 155450000 75157000 70102000 72746000 72473000 78132000 75293000 93254000 10 10 4 10 10 10 10 10 10 10 10 32177000000 17491000000 14686000000 3105 2666 2910 17703;17704;17705;17706;17707;17708;17709;17710;17711;17712;17713;17714;17715;17716;17717;17718;17719;17720 21269;21270;21271;21272;21273;21274;21275;21276;21277;21278;21279;21280;21281;21282;21283;21284;21285;21286;21287;21288;21289;21290 21290 22 DLSYCLSGMYDHR Oxidation (M) 1631.6708 0.67082665 1181 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 0 0 1 0 By MS/MS By MS/MS 4.43 1.29 2 2 2 1 3 4 43.049 43.092 3 2.8452E-06 11916 20211116_3442_TMUAki_TMT10x_S_F4 107.65 102.93 8324100 13308000 181410 16408000 12796000 13668000 8998600 10244000 10648000 8943400 12024000 7751900 12430000 921830 16479000 12185000 14016000 9377300 10549000 10810000 8788100 11556000 6 6 6 6 6 6 6 6 6 6 6 4478000 6996300 137580 8441000 9805700 10844000 5862100 5320500 5584800 4636200 6174700 4170500 6533600 574100 8545100 9311400 10775000 6143800 5667800 5714600 4556200 5938200 3 3 3 3 3 3 3 3 3 3 3 3846100 6311900 43827 7967100 2990500 2824300 3136600 4923000 5063700 4307100 5849100 3581400 5895900 347730 7933900 2873800 3241600 3233600 4881000 5094900 4231900 5618100 3 3 3 3 3 3 3 3 3 3 3 2343500000 1307500000 1036000000 3106 1181 2911 17721;17722;17723;17724;17725;17726;17727 21291;21292;21293;21294;21295;21296;21297 21295 1589 7 DLSYCLSGMYDHR Unmodified 1615.6759 0.67591203 1181 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 4.8 0.748 2 2 1 3 2 51.817 51.989 3 7.5981E-13 15176 20211116_3431_TMUAki_TMT10x_P_F4 136.01 129.93 16849000 27942000 112580 35856000 27206000 23865000 19268000 20229000 20520000 18731000 25838000 15688000 26102000 1563800 35841000 25888000 24970000 19998000 20706000 21009000 18356000 24760000 6 6 3 6 6 6 6 6 6 6 6 5618600 9141900 32247 11574000 16422000 14188000 8511900 7305200 7173700 5847400 8210700 5231600 8539500 635420 11675000 15549000 14138000 9006200 7731100 7393400 5770900 7888500 2 2 1 2 2 2 2 2 2 2 2 11230000 18800000 80335 24282000 10784000 9677300 10756000 12924000 13346000 12884000 17627000 10456000 17563000 928370 24166000 10340000 10832000 10992000 12975000 13616000 12585000 16872000 4 4 2 4 4 4 4 4 4 4 4 1216600000 537750000 678900000 3107 1181 2911 17728;17729;17730;17731;17732 21298;21299;21300;21301;21302;21303;21304;21305 21298 8 DLTDYLMK Unmodified 997.47903 0.47903335 1276;1406;1414;1911 P60709;P63261;P68133;P68032;P62736;P63267;P63267-2;Q562R1 ACTB;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2 no no 0 0 0 0 By MS/MS By MS/MS 4.93 1.61 1 3 2 2 4 3 9 6 61.597 61.578 2;3 0.00041033 21063 20211116_3444_TMUAki_TMT10x_S_F5 141.47 61.286 307590000 470460000 7157700 590340000 278490000 332060000 337290000 135990000 129510000 185430000 320030000 286440000 439440000 29384000 589910000 268790000 349810000 332620000 149640000 147610000 179060000 302830000 26 26 20 26 26 26 26 26 26 26 26 127280000 192910000 1222100 232110000 189180000 185530000 172470000 64665000 61880000 81202000 133350000 118520000 180160000 12399000 233320000 181040000 189170000 172400000 72342000 70328000 78625000 126420000 16 16 13 16 16 16 16 16 16 16 16 180310000 277550000 5935600 358230000 89315000 146530000 164820000 71325000 67635000 104230000 186690000 167910000 259280000 16985000 356590000 87752000 160640000 160220000 77298000 77284000 100440000 176400000 10 10 7 10 10 10 10 10 10 10 10 28894000000 16127000000 12766000000 3108 1276;1406;1414;1911 2912 17733;17734;17735;17736;17737;17738;17739;17740;17741;17742;17743;17744;17745;17746;17747 21306;21307;21308;21309;21310;21311;21312;21313;21314;21315;21316;21317;21318;21319;21320;21321;21322;21323;21324;21325;21326;21327;21328;21329;21330;21331;21332 21326 27 DLTDYLMK Oxidation (M) 1013.4739 0.47394797 1276;1406;1414;1911 P60709;P63261;P68133;P68032;P62736;P63267;P63267-2;Q562R1 ACTB;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2 no no 0 0 1 0 By MS/MS By MS/MS 5.07 1.24 2 3 4 4 2 8 7 61.325 61.419 2;3 0.0016778 19249 20211116_3433_TMUAki_TMT10x_P_F5 97.798 42.122 237440000 379680000 1966800 469820000 368810000 459470000 282830000 333460000 558740000 374240000 378750000 221080000 354620000 21280000 472770000 351460000 465890000 299920000 346620000 549960000 363820000 370940000 19 19 13 19 19 19 19 19 19 19 19 137880000 211320000 810990 255720000 318600000 345630000 200870000 178750000 283130000 196660000 200110000 128380000 197350000 13803000 259090000 302520000 342800000 212450000 190700000 281490000 191330000 195610000 12 12 8 12 12 12 12 12 12 12 12 99558000 168360000 1155800 214090000 50214000 113850000 81961000 154710000 275610000 177580000 178630000 92698000 157270000 7476500 213680000 48940000 123080000 87471000 155920000 268470000 172500000 175320000 7 7 5 7 7 7 7 7 7 7 7 26587000000 17511000000 9076800000 3109 1276;1406;1414;1911 2912 17748;17749;17750;17751;17752;17753;17754;17755;17756;17757;17758;17759;17760;17761;17762 21333;21334;21335;21336;21337;21338;21339;21340;21341;21342;21343;21344;21345;21346;21347;21348;21349;21350;21351;21352;21353 21339 1719 21 DLTEGMRKIFK Unmodified 1336.7173 0.71730656 3385 yes yes 0 0 0 2 By MS/MS 3 0 1 1 51.779 51.412 4 0.079484 17678 20211116_3441_TMUAki_TMT10x_S_F3 44.765 7.6087 + 1297000 1889800 0 1784500 1329000 1285400 1148200 1975300 1701000 1592100 1641700 1207500 1763000 84114 1820500 1268200 1355800 1191300 1962100 1704200 1570700 1585500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1297000 1889800 0 1784500 1329000 1285400 1148200 1975300 1701000 1592100 1641700 1207500 1763000 84114 1820500 1268200 1355800 1191300 1962100 1704200 1570700 1585500 1 1 0 1 1 1 1 1 1 1 1 716200000 0 716200000 3110 3385 2913 17763 21354 21354 1 DLTEYLSR Unmodified 995.49238 0.49237523 151;152 O14979;O14979-3;O14979-2 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like no no 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 53.945 53.946 2 0.00042886 17594 20211116_3430_TMUAki_TMT10x_P_F3 146.58 98.238 41245000 65585000 225450 85249000 68252000 66759000 44701000 56837000 62736000 49714000 59741000 38404000 61271000 3863600 85303000 64856000 68927000 47132000 58075000 62928000 48847000 57723000 6 6 3 6 6 6 6 6 6 6 6 21641000 34008000 207450 44383000 52845000 52572000 31699000 29866000 33924000 26703000 31176000 20151000 31772000 2394200 44668000 50149000 52542000 33328000 31417000 34317000 26210000 30159000 3 3 2 3 3 3 3 3 3 3 3 19604000 31577000 17997 40866000 15407000 14187000 13002000 26971000 28812000 23011000 28566000 18253000 29500000 1469500 40635000 14706000 16385000 13804000 26658000 28611000 22637000 27564000 3 3 1 3 3 3 3 3 3 3 3 7709600000 4789000000 2920600000 3111 151;152 2914 17764;17765;17766;17767;17768;17769 21355;21356;21357;21358;21359;21360 21355 6 DLTGQVPTPVVK Unmodified 1252.7027 0.70270235 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.8 0.4 1 4 3 2 53.617 53.75 2;3 3.9505E-08 15017 20211116_3434_TMUAki_TMT10x_P_F6 122.7 89.579 12086000 18963000 27988 22413000 20248000 18633000 13340000 16051000 16673000 13815000 16960000 11253000 17708000 1080000 22565000 19239000 19157000 13996000 16383000 16827000 13585000 16352000 4 4 1 4 4 4 4 4 4 4 4 6419700 10240000 0 11756000 15404000 14647000 8850800 8482800 8746800 7267700 8913100 5977000 9561100 614780 11929000 14602000 14604000 9317100 8899400 8908800 7148100 8593000 2 2 0 2 2 2 2 2 2 2 2 5666000 8723000 27988 10657000 4844400 3986500 4489400 7568200 7926700 6547500 8046700 5275600 8146700 465210 10636000 4636600 4553100 4678800 7483600 7917900 6436700 7758600 2 2 1 2 2 2 2 2 2 2 2 1268200000 670950000 597270000 3112 1057 2915 17770;17771;17772;17773;17774 21361;21362;21363;21364;21365;21366 21363 6 DLTQMADELRR Oxidation (M) 1362.6562 0.65616287 997 P41227;P41227-2 NAA10 N-alpha-acetyltransferase 10 yes no 0 0 1 1 By MS/MS By MS/MS 3.25 0.829 1 1 2 2 2 35.203 35.167 3 0.00032912 11013 20211116_3441_TMUAki_TMT10x_S_F3 82.437 55.007 1219400 1966500 2072.6 2232700 2082200 1938500 1366900 1568200 1797100 1432800 1780700 1135400 1835900 115110 2254500 1978600 1984600 1437200 1609100 1808800 1404900 1718300 2 2 2 2 2 2 2 2 2 2 2 642240 943360 1992.1 1138100 1449400 1388100 730680 736680 866290 652110 875360 598000 880980 66407 1151000 1371800 1384000 782930 779350 875690 640370 844140 1 1 1 1 1 1 1 1 1 1 1 577160 1023100 80.518 1094600 632820 550430 636190 831540 930760 780690 905380 537390 954940 48705 1103500 606870 600620 654260 829750 933100 764550 874170 1 1 1 1 1 1 1 1 1 1 1 158020000 91266000 66756000 3113 997 2916 17775;17776;17777;17778 21367;21368;21369 21369 1282 3 DLTQMADELRR Unmodified 1346.6612 0.66124824 997 P41227;P41227-2 NAA10 N-alpha-acetyltransferase 10 yes no 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 50.722 50.857 3 3.7781E-07 14751 20211116_3431_TMUAki_TMT10x_P_F4 137.6 98.965 3824200 5672600 73646 7028800 5543800 4654600 3887200 3391400 2953700 3019600 4561600 3561200 5298200 409770 7039200 5278500 4859900 4000700 3500700 3102800 2964400 4350600 2 2 2 2 2 2 2 2 2 2 2 2189500 2910300 18869 3777700 3897600 3587200 2687800 1790800 1668000 1631900 2402800 2038800 2718900 223030 3789800 3707900 3625700 2758000 1906700 1767600 1600300 2295200 1 1 1 1 1 1 1 1 1 1 1 1634700 2762300 54777 3251100 1646300 1067500 1199400 1600500 1285700 1387700 2158800 1522400 2579300 186740 3249500 1570600 1234100 1242700 1594000 1335200 1364100 2055500 1 1 1 1 1 1 1 1 1 1 1 681670000 348260000 333410000 3114 997 2916 17779;17780 21370;21371 21370 2 DLTTAGAVTQCYR Unmodified 1454.6824 0.68237762 1495 Q02543 RPL18A 60S ribosomal protein L18a yes yes 0 0 0 0 By MS/MS By MS/MS 4.71 1.03 2 4 4 4 7 7 43.1 43.179 2;3 2.0632E-78 10655 20211116_3434_TMUAki_TMT10x_P_F6 347.46 307.46 25906000 42870000 187620 50526000 49014000 53200000 30442000 41985000 49061000 35164000 41008000 24121000 40031000 2420900 51044000 46526000 53780000 32426000 43050000 48811000 34624000 39808000 18 18 8 18 18 18 18 18 18 18 18 14799000 23896000 142800 28726000 40028000 44609000 22284000 24979000 29064000 20657000 23283000 13780000 22316000 1589400 29202000 37935000 44024000 23741000 26258000 29066000 20352000 22639000 10 10 5 10 10 10 10 10 10 10 10 11107000 18974000 44822 21800000 8985600 8591100 8158700 17007000 19997000 14507000 17725000 10341000 17715000 831520 21842000 8591100 9755900 8685500 16792000 19745000 14272000 17169000 8 8 3 8 8 8 8 8 8 8 8 6350800000 4199600000 2151200000 3115 1495 2917 17781;17782;17783;17784;17785;17786;17787;17788;17789;17790;17791;17792;17793;17794 21372;21373;21374;21375;21376;21377;21378;21379;21380;21381;21382;21383;21384;21385;21386;21387;21388;21389;21390 21381 19 DLVAIEAK Unmodified 857.48583 0.48583328 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 50.835 50.734 2 0.010628 16329 20211116_3430_TMUAki_TMT10x_P_F3 80.219 53.081 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3116 1475 2918 17795 21391 21391 1 DLVEAVAHILGIR Unmodified 1404.8089 0.80889876 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 82.563 82.547 3 0.0012431 28060 20211116_3442_TMUAki_TMT10x_S_F4 71.548 46.162 573980 1042400 13610 986170 847760 676660 782600 651310 639030 663750 832060 534540 972480 64106 1005400 812060 707860 792790 663860 663230 647740 796680 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 573980 1042400 13610 986170 847760 676660 782600 651310 639030 663750 832060 534540 972480 64106 1005400 812060 707860 792790 663860 663230 647740 796680 1 1 1 1 1 1 1 1 1 1 1 448670000 0 448670000 3117 1092 2919 17796;17797 21392 21392 1 DLVHTEGQLQNEEIVAHDGSATYLR Unmodified 2794.3522 0.35219994 3312 Q9Y547 HSPB11 Intraflagellar transport protein 25 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 2.43 1.18 2 2 1 2 3 4 51.926 51.808 4 3.8832E-60 17833 20211116_3441_TMUAki_TMT10x_S_F3 219.69 212.59 8060700 14192000 104860 13774000 12192000 17915000 10082000 14472000 14647000 12551000 12080000 7505900 13241000 699370 14144000 11641000 17918000 10478000 14831000 14610000 12337000 11732000 8 8 3 8 8 8 8 8 8 8 8 5211900 9244000 91336 8938600 9541500 15114000 7666000 9507100 9696200 8064400 7807800 4853400 8624500 568270 9232700 9106600 14890000 7936900 9906000 9708400 7935500 7590300 4 4 2 4 4 4 4 4 4 4 4 2848900 4948300 13523 4835800 2650600 2801100 2416200 4965100 4951300 4486400 4271800 2652500 4616800 131100 4910800 2534900 3027700 2541600 4924600 4902000 4401300 4141900 4 4 1 4 4 4 4 4 4 4 4 6223200000 3486200000 2736900000 3118 3312 2920 17798;17799;17800;17801;17802;17803;17804 21393;21394;21395;21396;21397;21398;21399;21400 21400 8 DLVLGPSGVLQGIRPGK Unmodified 1704.9887 0.98865404 1891 Q49A26;Q49A26-5;Q49A26-4;Q49A26-2;Q49A26-3 GLYR1 Putative oxidoreductase GLYR1 yes no 0 0 0 1 By MS/MS By MS/MS 2.6 0.49 2 3 2 3 65.066 64.717 3;4 5.828E-36 22112 20211116_3430_TMUAki_TMT10x_P_F3 209.13 175.27 36947000 61344000 581630 58106000 42458000 61205000 44340000 39989000 39113000 40727000 46504000 34405000 57229000 3595800 59553000 40788000 61684000 44716000 41751000 40281000 39746000 44632000 8 8 5 8 8 8 8 8 8 8 8 24035000 38665000 563370 37715000 26372000 46801000 29529000 25986000 24874000 26331000 30361000 22383000 36075000 2497600 38679000 25397000 46650000 29643000 27481000 25704000 25702000 29118000 4 4 3 4 4 4 4 4 4 4 4 12911000 22679000 18258 20390000 16086000 14404000 14811000 14004000 14238000 14396000 16143000 12022000 21154000 1098200 20874000 15391000 15034000 15073000 14270000 14578000 14044000 15513000 4 4 2 4 4 4 4 4 4 4 4 4120700000 1811300000 2309300000 3119 1891 2921 17805;17806;17807;17808;17809 21401;21402;21403;21404;21405;21406;21407;21408 21404 8 DLVLSVHNR Unmodified 1051.5774 0.57744226 1753 Q15020;Q15020-4 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 0 0 0 0 By MS/MS 5 0 1 1 34.759 34.937 3 0.0005509 7481 20211116_3444_TMUAki_TMT10x_S_F5 83.998 61.507 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3120 1753 2922 17810 21409 21409 1 DLVQDPSLLGGTISAYK Unmodified 1775.9305 0.93053004 2913 Q9NQX3;Q9NQX3-2 GPHN Gephyrin;Molybdopterin adenylyltransferase;Molybdopterin molybdenumtransferase yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 75.674 75.704 3 4.8524E-11 24384 20211116_3445_TMUAki_TMT10x_S_F6 129.11 110.97 9544900 15535000 219080 14611000 10833000 10694000 11247000 9880300 9768500 10927000 11964000 8888800 14492000 1013500 14912000 10411000 11118000 11341000 10118000 10080000 10629000 11473000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9544900 15535000 219080 14611000 10833000 10694000 11247000 9880300 9768500 10927000 11964000 8888800 14492000 1013500 14912000 10411000 11118000 11341000 10118000 10080000 10629000 11473000 2 2 2 2 2 2 2 2 2 2 2 1262900000 0 1262900000 3121 2913 2923 17811;17812;17813 21410;21411;21412 21411 3 DLVSSLTSGLLTIGDR Unmodified 1645.8887 0.88866522 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 By MS/MS By MS/MS 6.91 1.98 1 1 3 6 6 5 80.708 80.718 2;3 4.872E-37 26679 20211116_3436_TMUAki_TMT10x_P_F8 218.21 170.68 9270900 12577000 11485 15459000 8552700 14087000 8833300 6259200 6982300 8560200 9936200 8631900 11747000 353530 15547000 8205700 14260000 8888000 6827900 7289100 8265600 9493600 4 4 1 4 4 4 4 4 4 4 4 9270900 12577000 11485 15459000 8552700 14087000 8833300 6259200 6982300 8560200 9936200 8631900 11747000 353530 15547000 8205700 14260000 8888000 6827900 7289100 8265600 9493600 4 4 1 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3789800000 3789800000 0 3122 1200 2924 17814;17815;17816;17817;17818;17819;17820;17821;17822;17823;17824 21413;21414;21415;21416;21417;21418;21419;21420;21421;21422 21416 10 DLVVPEKWEESGPQFITNSEEVR Unmodified 2687.3079 0.3078755 1614 Q13257 MAD2L1 Mitotic spindle assembly checkpoint protein MAD2A yes yes 0 0 0 1 By MS/MS 1 0 1 1 72.445 72.317 3 0.0045502 25115 20211116_3439_TMUAki_TMT10x_S_F1 52.91 41.853 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3123 1614 2925 17825 21423 21423 1 DLWYLETEKPPPPAR Unmodified 1810.9254 0.92538508 1160 P51610;P51610-2;P51610-4;P51610-3 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 0 1 By MS/MS 6 0 2 2 58.967 59.027 3 3.9864E-15 17180 20211116_3434_TMUAki_TMT10x_P_F6 143.05 116.62 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3124 1160 2926 17826;17827 21424;21425 21425 2 DLYANTVLSGGSTMYPGIADR Oxidation (M) 2216.0419 0.041947754 1911 Q562R1 ACTBL2 Beta-actin-like protein 2 yes yes 0 0 1 0 By MS/MS 5 1.41 1 2 3 75.102 75.013 3 0.0083435 25487 20211116_3430_TMUAki_TMT10x_P_F3 47.808 32.653 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3125 1911 2927 17828;17829;17830 21426;21427;21428 21426 2507 3 DLYANTVLSGGSTMYPGIADR Unmodified 2200.047 0.047033132 1911 Q562R1 ACTBL2 Beta-actin-like protein 2 yes yes 0 0 0 0 By MS/MS 7 0 1 1 72.404 72.745 3 7.6131E-08 24717 20211116_3435_TMUAki_TMT10x_P_F7 88.282 57.321 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3126 1911 2927 17831 21429 21429 1 DLYANTVLSGGTTMYPGIADR Oxidation (M) 2230.0576 0.057597819 1276;1406 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 1 0 By MS/MS By MS/MS 6.21 1.37 3 5 4 4 23 42 101 8 81 109 42.098 42.179 2;3;4 6.5815E-44 22523 20211116_3446_TMUAki_TMT10x_S_F7 207.08 183.56 440460000 730210000 2972300 720390000 506880000 637860000 469590000 404870000 406750000 429640000 514580000 410110000 681330000 30581000 734380000 485010000 649670000 476330000 424140000 420370000 418580000 493050000 199 199 66 199 199 198 199 199 198 199 199 239040000 384970000 2152800 381480000 274420000 440550000 262420000 212660000 215880000 230880000 272280000 222570000 359200000 17124000 390300000 262820000 440040000 265370000 228270000 223660000 224740000 260920000 93 93 32 93 93 93 93 93 92 93 93 201420000 345240000 819520 338910000 232460000 197310000 207170000 192210000 190870000 198760000 242290000 187540000 322120000 13457000 344080000 222190000 209630000 210960000 195880000 196710000 193840000 232140000 106 106 34 106 106 105 106 106 106 106 106 610790000000 302190000000 308590000000 3127 1276;1406 2928 17832;17833;17834;17835;17836;17837;17838;17839;17840;17841;17842;17843;17844;17845;17846;17847;17848;17849;17850;17851;17852;17853;17854;17855;17856;17857;17858;17859;17860;17861;17862;17863;17864;17865;17866;17867;17868;17869;17870;17871;17872;17873;17874;17875;17876;17877;17878;17879;17880;17881;17882;17883;17884;17885;17886;17887;17888;17889;17890;17891;17892;17893;17894;17895;17896;17897;17898;17899;17900;17901;17902;17903;17904;17905;17906;17907;17908;17909;17910;17911;17912;17913;17914;17915;17916;17917;17918;17919;17920;17921;17922;17923;17924;17925;17926;17927;17928;17929;17930;17931;17932;17933;17934;17935;17936;17937;17938;17939;17940;17941;17942;17943;17944;17945;17946;17947;17948;17949;17950;17951;17952;17953;17954;17955;17956;17957;17958;17959;17960;17961;17962;17963;17964;17965;17966;17967;17968;17969;17970;17971;17972;17973;17974;17975;17976;17977;17978;17979;17980;17981;17982;17983;17984;17985;17986;17987;17988;17989;17990;17991;17992;17993;17994;17995;17996;17997;17998;17999;18000;18001;18002;18003;18004;18005;18006;18007;18008;18009;18010;18011;18012;18013;18014;18015;18016;18017;18018;18019;18020;18021 21430;21431;21432;21433;21434;21435;21436;21437;21438;21439;21440;21441;21442;21443;21444;21445;21446;21447;21448;21449;21450;21451;21452;21453;21454;21455;21456;21457;21458;21459;21460;21461;21462;21463;21464;21465;21466;21467;21468;21469;21470;21471;21472;21473;21474;21475;21476;21477;21478;21479;21480;21481;21482;21483;21484;21485;21486;21487;21488;21489;21490;21491;21492;21493;21494;21495;21496;21497;21498;21499;21500;21501;21502;21503;21504;21505;21506;21507;21508;21509;21510;21511;21512;21513;21514;21515;21516;21517;21518;21519;21520;21521;21522;21523;21524;21525;21526;21527;21528;21529;21530;21531;21532;21533;21534;21535;21536;21537;21538;21539;21540;21541;21542;21543;21544;21545;21546;21547;21548;21549;21550;21551;21552;21553;21554;21555;21556;21557;21558;21559;21560;21561;21562;21563;21564;21565;21566;21567;21568;21569;21570;21571;21572;21573;21574;21575;21576;21577;21578;21579;21580;21581;21582;21583;21584;21585;21586;21587;21588;21589;21590;21591;21592;21593;21594;21595;21596;21597;21598;21599;21600;21601;21602;21603;21604;21605;21606;21607;21608;21609;21610;21611;21612;21613;21614;21615;21616;21617;21618;21619;21620;21621;21622;21623;21624;21625;21626;21627;21628;21629;21630;21631;21632;21633;21634;21635;21636;21637;21638;21639;21640;21641;21642;21643;21644;21645;21646;21647 21636 1720 218 DLYANTVLSGGTTMYPGIADR Unmodified 2214.0627 0.062683196 1276;1406 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS 6.57 1.39 1 1 3 3 4 11 46 15 45 39 63.161 63.187 2;3 2.833E-128 22692 20211116_3434_TMUAki_TMT10x_P_F6 363.78 305.61 229820000 388780000 1954000 409600000 270070000 225570000 266290000 129250000 105860000 147020000 247140000 213970000 362850000 17550000 413640000 258740000 238980000 265340000 136810000 119720000 142860000 234030000 99 99 44 99 99 99 99 99 99 99 99 69339000 112790000 1285500 114980000 67855000 106550000 78560000 49150000 41823000 53813000 75568000 64566000 105260000 6294300 117020000 65369000 107770000 77990000 53008000 45353000 52364000 71853000 58 58 29 58 58 58 58 58 58 58 58 160490000 275980000 668470 294620000 202210000 119020000 187730000 80104000 64034000 93211000 171570000 149410000 257590000 11256000 296620000 193370000 131210000 187350000 83800000 74372000 90495000 162180000 41 41 15 41 41 41 41 41 41 41 41 274250000000 125880000000 148360000000 3128 1276;1406 2928 18022;18023;18024;18025;18026;18027;18028;18029;18030;18031;18032;18033;18034;18035;18036;18037;18038;18039;18040;18041;18042;18043;18044;18045;18046;18047;18048;18049;18050;18051;18052;18053;18054;18055;18056;18057;18058;18059;18060;18061;18062;18063;18064;18065;18066;18067;18068;18069;18070;18071;18072;18073;18074;18075;18076;18077;18078;18079;18080;18081;18082;18083;18084;18085;18086;18087;18088;18089;18090;18091;18092;18093;18094;18095;18096;18097;18098;18099;18100;18101;18102;18103;18104;18105 21648;21649;21650;21651;21652;21653;21654;21655;21656;21657;21658;21659;21660;21661;21662;21663;21664;21665;21666;21667;21668;21669;21670;21671;21672;21673;21674;21675;21676;21677;21678;21679;21680;21681;21682;21683;21684;21685;21686;21687;21688;21689;21690;21691;21692;21693;21694;21695;21696;21697;21698;21699;21700;21701;21702;21703;21704;21705;21706;21707;21708;21709;21710;21711;21712;21713;21714;21715;21716;21717;21718;21719;21720;21721;21722;21723;21724;21725;21726;21727;21728;21729;21730;21731;21732;21733;21734;21735;21736;21737;21738;21739;21740;21741;21742;21743;21744;21745;21746;21747;21748;21749;21750;21751;21752;21753;21754;21755;21756;21757;21758;21759;21760;21761;21762;21763;21764 21661 117 DLYEDELVPLFEK Unmodified 1608.7923 0.79230522 211 O43390;O43390-2;O43390-3;O43390-4 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 0 By MS/MS By MS/MS 2.23 1.04 17 34 14 4 4 49 24 58.008 57.94 2;3 1.6545E-22 26820 20211116_3442_TMUAki_TMT10x_S_F4 206.97 173.75 338720000 554480000 1201900 502290000 407990000 518840000 425260000 372250000 390450000 398770000 432660000 315370000 517200000 26728000 516350000 391480000 524250000 429380000 386670000 400240000 388370000 416070000 85 85 43 85 85 85 85 85 85 85 85 163170000 260350000 615020 232170000 164470000 309420000 194430000 175400000 186410000 185930000 198840000 151920000 242830000 12326000 240000000 158380000 307440000 195400000 185410000 190430000 181150000 191430000 52 52 25 52 52 52 52 52 52 52 52 175550000 294140000 586920 270120000 243520000 209430000 230830000 196850000 204040000 212850000 233820000 163450000 274370000 14402000 276350000 233100000 216810000 233980000 201260000 209810000 207220000 224630000 33 33 18 33 33 33 33 33 33 33 33 55704000000 27882000000 27822000000 3129 211 2929 18106;18107;18108;18109;18110;18111;18112;18113;18114;18115;18116;18117;18118;18119;18120;18121;18122;18123;18124;18125;18126;18127;18128;18129;18130;18131;18132;18133;18134;18135;18136;18137;18138;18139;18140;18141;18142;18143;18144;18145;18146;18147;18148;18149;18150;18151;18152;18153;18154;18155;18156;18157;18158;18159;18160;18161;18162;18163;18164;18165;18166;18167;18168;18169;18170;18171;18172;18173;18174;18175;18176;18177;18178 21765;21766;21767;21768;21769;21770;21771;21772;21773;21774;21775;21776;21777;21778;21779;21780;21781;21782;21783;21784;21785;21786;21787;21788;21789;21790;21791;21792;21793;21794;21795;21796;21797;21798;21799;21800;21801;21802;21803;21804;21805;21806;21807;21808;21809;21810;21811;21812;21813;21814;21815;21816;21817;21818;21819;21820;21821;21822;21823;21824;21825;21826;21827;21828;21829;21830;21831;21832;21833;21834;21835;21836;21837;21838;21839;21840;21841;21842;21843;21844;21845;21846;21847;21848;21849;21850;21851;21852;21853;21854 21850 90 DLYIDRPLPYLIGSK Unmodified 1761.9665 0.96652161 1960 Q9Y4E1;Q641Q2;Q9Y4E1-5;Q9Y4E1-3;Q9Y4E1-6;Q9Y4E1-2;Q9Y4E1-1;Q641Q2-2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A yes no 0 0 0 1 By MS/MS 8 0 2 2 71.915 71.961 3 1.4013E-06 23093 20211116_3436_TMUAki_TMT10x_P_F8 97.579 75.258 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3130 1960 2930 18179;18180 21855;21856 21855 2 DLYIRPNIAQK Unmodified 1329.7405 0.74048484 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 0 1 By MS/MS By MS/MS 5 3.29 2 1 2 3 2 46.373 46.441 3 2.7395E-09 14627 20211116_3439_TMUAki_TMT10x_S_F1 159.09 132.73 11992000 18486000 169470 24825000 23868000 19274000 12889000 14388000 16337000 13115000 16697000 11167000 17273000 1318500 24795000 22620000 19868000 13754000 14837000 16482000 12861000 16095000 4 4 4 4 4 4 4 4 4 4 4 7072100 10685000 105200 14409000 19952000 15751000 9083400 8204200 9426000 7653100 9496300 6585600 9984200 864760 14457000 18864000 15793000 9792600 8705800 9576900 7497100 9158600 2 2 2 2 2 2 2 2 2 2 2 4920100 7800500 64266 10416000 3915900 3523800 3805200 6183300 6910500 5462100 7200200 4581600 7288500 453740 10339000 3755900 4074700 3961700 6131000 6904700 5364300 6936900 2 2 2 2 2 2 2 2 2 2 2 1256400000 766000000 490360000 3131 3317 2931 18181;18182;18183;18184;18185 21857;21858;21859;21860 21859 4 DMAAPGTSSVPAPTAGNAEKLEIAKR Oxidation (M) 2597.3119 0.31191502 2049 Q7L014 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 0 0 1 2 By MS/MS 6 0 1 1 45.457 45.532 4 2.098E-23 11647 20211116_3434_TMUAki_TMT10x_P_F6 145.81 137.52 1772000 3438700 9029.4 2631200 5162500 7973000 3546800 5098900 5680800 4044000 3562400 1649900 3205700 197390 2821100 4909600 7728300 3748200 5297700 5610700 3993100 3502100 3 3 2 3 3 3 3 3 3 3 3 1772000 3438700 9029.4 2631200 5162500 7973000 3546800 5098900 5680800 4044000 3562400 1649900 3205700 197390 2821100 4909600 7728300 3748200 5297700 5610700 3993100 3502100 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 278540000 278540000 0 3132 2049 2932 18186 21861;21862;21863 21863 2562 3 DMAIATGGAVFGEEGLTLNLEDVQPHDLGK Oxidation (M) 3112.5023 0.50229457 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 3.04 1.17 7 18 26 17 6 2 41 35 85.476 85.44 3;4 3.1552E-27 29336 20211116_3431_TMUAki_TMT10x_P_F4 152.99 146.82 69127000 123810000 792610 89187000 78328000 128230000 94149000 102220000 114730000 109260000 97274000 64368000 115400000 4788400 94015000 75534000 127640000 95310000 105450000 115200000 106420000 94377000 101 101 58 101 101 101 101 101 101 101 101 40361000 69928000 480570 52529000 37716000 86653000 49182000 59876000 65950000 62976000 56010000 37582000 65185000 2852900 55327000 36468000 85570000 49807000 62322000 66007000 61378000 54338000 63 63 37 63 63 63 63 63 63 63 63 28766000 53880000 312040 36659000 40612000 41574000 44967000 42342000 48784000 46286000 41264000 26786000 50212000 1935500 38688000 39067000 42067000 45502000 43130000 49196000 45043000 40038000 38 38 21 38 38 38 38 38 38 38 38 30350000000 15221000000 15130000000 3133 613 2933 18187;18188;18189;18190;18191;18192;18193;18194;18195;18196;18197;18198;18199;18200;18201;18202;18203;18204;18205;18206;18207;18208;18209;18210;18211;18212;18213;18214;18215;18216;18217;18218;18219;18220;18221;18222;18223;18224;18225;18226;18227;18228;18229;18230;18231;18232;18233;18234;18235;18236;18237;18238;18239;18240;18241;18242;18243;18244;18245;18246;18247;18248;18249;18250;18251;18252;18253;18254;18255;18256;18257;18258;18259;18260;18261;18262 21864;21865;21866;21867;21868;21869;21870;21871;21872;21873;21874;21875;21876;21877;21878;21879;21880;21881;21882;21883;21884;21885;21886;21887;21888;21889;21890;21891;21892;21893;21894;21895;21896;21897;21898;21899;21900;21901;21902;21903;21904;21905;21906;21907;21908;21909;21910;21911;21912;21913;21914;21915;21916;21917;21918;21919;21920;21921;21922;21923;21924;21925;21926;21927;21928;21929;21930;21931;21932;21933;21934;21935;21936;21937;21938;21939;21940;21941;21942;21943;21944;21945;21946;21947;21948;21949;21950;21951;21952;21953;21954;21955;21956;21957;21958;21959;21960;21961;21962;21963;21964;21965;21966 21911 597 103 DMAIATGGAVFGEEGLTLNLEDVQPHDLGK Unmodified 3096.5074 0.50737995 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3.86 0.99 1 4 6 2 1 7 7 90.981 90.959 4 4.9338E-27 28788 20211116_3431_TMUAki_TMT10x_P_F4 150.17 138.43 4779800 7282400 45581 6748400 4120900 6651400 4635500 3594200 3365800 4053200 4713800 4450700 6793200 414510 6920700 3966800 6713300 4635800 3822400 3527500 3939700 4505500 23 23 14 23 23 23 23 23 23 23 23 4317600 6525700 37285 6061900 3562000 6143800 4001600 3181200 2949100 3582100 4118000 4020400 6087500 375130 6218200 3428700 6187200 4003400 3395900 3087700 3481900 3936300 14 14 11 14 14 14 14 14 14 14 14 462120 756650 8295.8 686440 558910 507610 633900 413060 416740 471120 595790 430310 705770 39384 702570 538110 526020 632350 426480 439820 457730 569200 9 9 3 9 9 9 9 9 9 9 9 1785300000 804420000 980900000 3134 613 2933 18263;18264;18265;18266;18267;18268;18269;18270;18271;18272;18273;18274;18275;18276 21967;21968;21969;21970;21971;21972;21973;21974;21975;21976;21977;21978;21979;21980;21981;21982;21983;21984;21985;21986;21987;21988;21989 21973 23 DMDLVEVNEAFAPQYLAVER Oxidation (M) 2324.0995 0.099462633 1019 P42765 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 77.323 77.297 3 0.00785 25186 20211116_3428_TMUAki_TMT10x_P_F1 46.178 33.818 7130900 11868000 35650 10005000 8657700 12588000 8795300 9029800 9495000 10627000 10011000 6639500 11067000 598850 10377000 8303900 12585000 8935900 9408300 9647200 10313000 9641600 2 2 1 2 2 2 2 2 2 2 2 3641800 5561300 0 4908700 3305500 7344300 4014600 4033900 4384000 5235000 4732400 3390500 5186900 250260 5090200 3184200 7257200 4046600 4304400 4456100 5063300 4554400 1 1 0 1 1 1 1 1 1 1 1 3489100 6307000 35650 5096600 5352200 5243900 4780600 4995900 5111100 5391500 5278900 3248900 5880600 348590 5287000 5119700 5327500 4889300 5103800 5191100 5249300 5087100 1 1 1 1 1 1 1 1 1 1 1 1341000000 715690000 625310000 3135 1019 2934 18277;18278 21990;21991 21990 1316 2 DMEDPTPVPNIEEVVLPK Oxidation (M) 2036.9976 0.99762332 2379 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 0 0 1 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 76.073 75.974 3 0.0045505 26145 20211116_3429_TMUAki_TMT10x_P_F2 56.215 36.376 6425400 11522000 85408 10722000 7215400 11399000 8011700 7364900 7376300 7531700 8401000 5982900 10749000 571590 11005000 6940300 11480000 8065300 7696700 7568300 7349000 8072400 3 3 2 3 3 3 3 3 3 3 3 4089600 7197100 85408 6813500 4190500 8858200 5317500 4946700 4848100 5075800 5634500 3808500 6714300 420070 7008600 4051500 8810100 5320300 5230700 4980600 4952000 5411100 2 2 2 2 2 2 2 2 2 2 2 2335800 4325300 0 3908200 3025000 2540700 2694100 2418200 2528200 2455800 2766400 2174400 4034400 151520 3996000 2888800 2669800 2744900 2465900 2587800 2397000 2661300 1 1 0 1 1 1 1 1 1 1 1 1412400000 634320000 778120000 3136 2379 2935 18279;18280;18281;18282 21992;21993;21994;21995 21993 2712 4 DMESDYSGQGVDQLQR Oxidation (M) 1842.769 0.76902037 493 P04818 TYMS Thymidylate synthase yes yes 0 0 1 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 3 2 37.734 37.692 3 3.9632E-15 8875 20211116_3440_TMUAki_TMT10x_S_F2 145.86 139.28 617070 930640 5870.7 1114600 1709600 1591500 912890 712110 896650 638370 897480 574590 869070 71276 1131200 1619500 1572100 967140 766200 912930 626510 865740 4 4 3 4 4 4 4 4 4 4 4 551400 838310 4252.1 991010 1664000 1541700 867660 655550 823230 575710 819230 513430 782810 64604 1008400 1575700 1516700 920360 708850 839300 565550 790410 3 3 2 3 3 3 3 3 3 3 3 65670 92322 1618.5 123620 45619 49751 45231 56560 73420 62667 78251 61157 86263 6672.1 122790 43830 55393 46773 57346 73630 60953 75336 1 1 1 1 1 1 1 1 1 1 1 204520000 171180000 33346000 3137 493 2936 18283;18284;18285;18286;18287 21996;21997;21998;21999 21999 395 4 DMFASVGADGSVR Oxidation (M) 1326.5874 0.5874146 1325 P61962 DCAF7 DDB1- and CUL4-associated factor 7 yes yes 0 0 1 0 By MS/MS 3 0 1 1 38.266 38.308 2 0.00049489 11112 20211116_3430_TMUAki_TMT10x_P_F3 87.878 68.784 178630 258380 0 330720 450280 396130 199950 203770 233290 151270 242530 166270 241370 12141 333260 425030 395190 216940 215320 236200 149900 233680 2 2 0 2 2 2 2 2 2 2 2 178630 258380 0 330720 450280 396130 199950 203770 233290 151270 242530 166270 241370 12141 333260 425030 395190 216940 215320 236200 149900 233680 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14995000 14995000 0 3138 1325 2937 18288 22000;22001 22001 1775 2 DMFEEALR Oxidation (M) 1025.4488 0.44879585 911 P33991 MCM4 DNA replication licensing factor MCM4 yes yes 0 0 1 0 By MS/MS By MS/MS 2 0 2 1 1 42.614 42.489 2 0.0099597 12574 20211116_3429_TMUAki_TMT10x_P_F2 91.069 41.479 1827100 2940800 32017 3826700 3255900 3112200 2068300 2878300 3417700 2525800 2911100 1701400 2747400 201330 3830600 3094000 3209400 2201900 2927700 3399900 2481300 2823900 2 2 2 2 2 2 2 2 2 2 2 915630 1351400 10770 2000200 2505800 2389000 1312900 1379300 1729000 1215900 1445000 852620 1263400 108220 2000500 2373400 2387000 1407000 1448400 1730700 1194200 1402800 1 1 1 1 1 1 1 1 1 1 1 911450 1589400 21247 1826600 750080 723270 755460 1499000 1688700 1309900 1466000 848810 1484000 93107 1830200 720630 822300 794910 1479300 1669200 1287100 1421100 1 1 1 1 1 1 1 1 1 1 1 266450000 181210000 85239000 3139 911 2938 18289;18290 22002;22003 22002 1119 2 DMGSCEIYPQTIQHNPNGR Oxidation (M) 2231.9688 0.96879959 936 P35606;P35606-2 COPB2 Coatomer subunit beta' yes no 0 0 1 0 By MS/MS 4 0 1 1 34.439 34.464 3 6.4625E-24 8190 20211116_3431_TMUAki_TMT10x_P_F4 166.48 162.57 132940 197890 1820.8 269930 446060 344880 213820 217750 270000 176700 253300 123790 184920 17104 271410 421980 343860 230770 226580 271620 174270 244860 1 1 1 1 1 1 1 1 1 1 1 132940 197890 1820.8 269930 446060 344880 213820 217750 270000 176700 253300 123790 184920 17104 271410 421980 343860 230770 226580 271620 174270 244860 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 95547000 95547000 0 3140 936 2939 18291 22004 22004 1196 1 DMIILPEMVGSMVGVYNGK Unmodified 2052.0094 0.0093907588 1370 P62841 RPS15 40S ribosomal protein S15 yes yes 0 0 0 0 By MS/MS By MS/MS 6 2.92 1 1 2 3 1 81.312 81.317 3 1.1705E-31 26323 20211116_3447_TMUAki_TMT10x_S_F8 188.44 174.45 17448000 25948000 276290 32673000 16137000 11160000 20129000 3935500 3510200 5113100 14513000 16247000 24238000 1622500 32535000 15586000 12534000 19694000 4401200 4688700 4945300 13659000 5 5 4 5 5 5 5 5 5 5 5 10167000 14544000 113620 17948000 9539400 7759900 11907000 2329300 2049400 2992500 8180200 9467100 13583000 876880 17917000 9209100 8411700 11649000 2662200 2733800 2895300 7701400 3 3 2 3 3 3 3 3 3 3 3 7280800 11405000 162670 14725000 6598000 3400100 8221800 1606200 1460800 2120600 6332400 6780400 10654000 745670 14618000 6377200 4122000 8045500 1739000 1954900 2049900 5957800 2 2 2 2 2 2 2 2 2 2 2 2400700000 1759000000 641760000 3141 1370 2940 18292;18293;18294;18295 22005;22006;22007;22008;22009 22008 5 DMIILPEMVGSMVGVYNGK 3 Oxidation (M) 2099.9941 0.99413463 1370 P62841 RPS15 40S ribosomal protein S15 yes yes 0 0 3 0 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 67.388 67.464 3 2.1855E-06 20571 20211116_3434_TMUAki_TMT10x_P_F6 92.977 86.814 19057000 33349000 348490 29019000 22697000 45457000 22164000 41528000 48508000 39775000 30191000 17746000 31102000 1826200 30156000 21762000 45206000 23325000 42368000 47546000 38918000 29691000 10 10 6 10 10 10 10 10 10 10 10 11932000 20839000 276270 17728000 13225000 35000000 13829000 26099000 30386000 24500000 18343000 11111000 19434000 1194300 18563000 12708000 34390000 14508000 26937000 29760000 23994000 18068000 6 6 4 6 6 6 6 6 6 6 6 7125600 12509000 72217 11291000 9472200 10457000 8335200 15429000 18123000 15275000 11848000 6634700 11668000 631970 11592000 9054300 10816000 8817200 15432000 17786000 14924000 11623000 4 4 2 4 4 4 4 4 4 4 4 4217000000 1681300000 2535700000 3142 1370 2940 18296;18297;18298;18299;18300 22010;22011;22012;22013;22014;22015;22016;22017;22018;22019 22013 1839;1840;1841 10 DMIILPEMVGSMVGVYNGK 2 Oxidation (M) 2083.9992 0.99922 1370 P62841 RPS15 40S ribosomal protein S15 yes yes 0 0 2 0 By MS/MS 5.5 0.5 1 1 2 75.625 75.621 3 0.0011111 24010 20211116_3434_TMUAki_TMT10x_P_F6 61.821 55.383 8904900 14448000 320700 12625000 7346400 16315000 9923400 7555700 7397200 8429500 10259000 8293800 13475000 1015300 13064000 7128300 16196000 9852800 8150300 7737500 8196700 9807900 3 3 3 3 3 3 3 3 3 3 3 8904900 14448000 320700 12625000 7346400 16315000 9923400 7555700 7397200 8429500 10259000 8293800 13475000 1015300 13064000 7128300 16196000 9852800 8150300 7737500 8196700 9807900 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1077000000 1077000000 0 3143 1370 2940 18301;18302 22020;22021;22022 22022 1839;1840;1841 3 DMIILPEMVGSMVGVYNGK Oxidation (M) 2068.0043 0.0043053809 1370 P62841 RPS15 40S ribosomal protein S15 yes yes 0 0 1 0 By MS/MS By MS/MS 7.6 0.49 2 3 3 2 81.596 81.6 3 9.8527E-05 28206 20211116_3446_TMUAki_TMT10x_S_F7 68.41 51.332 9475100 14462000 55351 13568000 9140300 14267000 10077000 5846800 5247900 6584700 8376700 8822700 13491000 832450 13915000 8791100 14302000 10023000 6391600 5661200 6400600 7983800 2 2 2 2 2 2 2 2 2 2 2 9475100 14462000 55351 13568000 9140300 14267000 10077000 5846800 5247900 6584700 8376700 8822700 13491000 832450 13915000 8791100 14302000 10023000 6391600 5661200 6400600 7983800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3527500000 2379600000 1147900000 3144 1370 2940 18303;18304;18305;18306;18307 22023;22024;22025 22025 1839;1840;1841 3 DMIREVCGFAPYER Oxidation (M) 1757.7865 0.78652511 3288 Q9Y3U8 RPL36 60S ribosomal protein L36 yes yes 0 0 1 1 By MS/MS 4 0 1 1 44.759 44.97 3 0.025965 12732 20211116_3442_TMUAki_TMT10x_S_F4 49.595 37.234 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3145 3288 2941 18308 22026 22026 3257 1 DMLEAGILDTYLGK Oxidation (M) 1553.7647 0.76471026 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 1 0 By MS/MS By MS/MS 4.06 1.3 2 5 3 4 3 8 9 78.149 78.117 2;3 4.1145E-14 26183 20211116_3433_TMUAki_TMT10x_P_F5 142.89 123.13 48063000 83026000 363670 77558000 54499000 71666000 56252000 44637000 46057000 49895000 58104000 44752000 77452000 4154900 79420000 52306000 72764000 56652000 46906000 47728000 48514000 55678000 11 11 6 11 11 11 11 11 11 11 11 23936000 40337000 190610 37374000 24034000 46163000 26433000 22339000 22422000 24739000 28119000 22287000 37628000 2094400 38468000 23112000 45950000 26562000 23987000 23188000 24062000 26949000 5 5 3 5 5 5 5 5 5 5 5 24127000 42689000 173070 40184000 30465000 25503000 29820000 22298000 23635000 25157000 29985000 22464000 39824000 2060500 40952000 29193000 26814000 30090000 22918000 24540000 24452000 28729000 6 6 3 6 6 6 6 6 6 6 6 9553700000 4439500000 5114300000 3146 1146 2942 18309;18310;18311;18312;18313;18314;18315;18316;18317;18318;18319;18320;18321;18322;18323;18324;18325 22027;22028;22029;22030;22031;22032;22033;22034;22035;22036;22037;22038;22039;22040;22041 22033 1512 15 DMLEAGILDTYLGK Unmodified 1537.7698 0.76979564 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 By MS/MS By MS/MS 4.62 1.65 2 1 1 4 4 4 79.565 79.552 2;3 1.6561E-13 25741 20211116_3444_TMUAki_TMT10x_S_F5 129.84 103.24 9312800 15293000 0 14577000 9466100 15601000 10981000 7993500 7949500 8971200 10592000 8670600 14267000 714890 14937000 9110700 15659000 10965000 8540400 8313700 8721400 10136000 2 2 0 2 2 2 2 2 2 2 2 9312800 15293000 0 14577000 9466100 15601000 10981000 7993500 7949500 8971200 10592000 8670600 14267000 714890 14937000 9110700 15659000 10965000 8540400 8313700 8721400 10136000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1907700000 886470000 1021200000 3147 1146 2942 18326;18327;18328;18329;18330;18331;18332;18333 22042;22043;22044;22045;22046;22047 22047 6 DMLLANKVPAAAR Oxidation (M) 1384.7497 0.74966932 508 P05388;P05388-2;Q8NHW5 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 0 0 1 1 By MS/MS 8 0 1 1 42.899 43.08 3 0.052563 11356 20211116_3436_TMUAki_TMT10x_P_F8 42.3 26.076 759350 1108500 5644.9 1255700 1937000 1965900 1042700 1064300 1352700 1036300 1214700 707070 1034900 84710 1281300 1835200 1938600 1114000 1126800 1357700 1013200 1176000 1 1 1 1 1 1 1 1 1 1 1 759350 1108500 5644.9 1255700 1937000 1965900 1042700 1064300 1352700 1036300 1214700 707070 1034900 84710 1281300 1835200 1938600 1114000 1126800 1357700 1013200 1176000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 95323000 95323000 0 3148 508 2943 18334 22048 22048 412 1 DMNQVLDAYENKKPFYLYTGR Unmodified 2564.237 0.23695917 782 P23381;P23381-2 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 0 0 0 2 By MS/MS 2 0 1 1 73.865 73.681 4 0.00015617 25155 20211116_3429_TMUAki_TMT10x_P_F2 66.137 56.678 4233300 6784300 90063 6230100 5682500 9268300 7194800 4179100 3537500 4863300 5271000 3942300 6328400 455200 6440300 5492100 9140100 7105700 4526300 3820300 4721600 5031100 1 1 1 1 1 1 1 1 1 1 1 4233300 6784300 90063 6230100 5682500 9268300 7194800 4179100 3537500 4863300 5271000 3942300 6328400 455200 6440300 5492100 9140100 7105700 4526300 3820300 4721600 5031100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1429200000 1429200000 0 3149 782 2944 18335 22049 22049 1 DMSLYASLTSEK Oxidation (M) 1359.6228 0.62279705 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 1 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 56.993 57.096 3 1.9138E-07 17296 20211116_3431_TMUAki_TMT10x_P_F4 127.34 113.19 14101000 23161000 176740 23100000 17677000 22299000 14893000 17276000 17836000 16890000 18629000 13131000 21612000 1337800 23558000 16887000 22653000 15344000 17807000 18044000 16512000 17946000 4 4 3 4 4 4 4 4 4 4 4 7713900 12458000 97668 12814000 11248000 16450000 9204800 9146500 9476000 8998400 10054000 7182700 11626000 733980 13102000 10737000 16370000 9452100 9663700 9648800 8794400 9680700 2 2 1 2 2 2 2 2 2 2 2 6387300 10703000 79070 10286000 6428500 5849200 5688600 8129300 8359600 7891600 8575300 5947800 9985600 603820 10456000 6150200 6283600 5891600 8143100 8395200 7717200 8265600 2 2 2 2 2 2 2 2 2 2 2 2109500000 1244100000 865390000 3150 1057 2945 18336;18337;18338;18339;18340 22050;22051;22052;22053;22054 22051 1369 5 DMTSEQLDDILK Unmodified 1406.6599 0.65991084 497 P05023;P05023-3;P05023-4 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes no 0 0 0 0 By MS/MS 3 0 1 1 68.281 67.824 3 0.021026 24423 20211116_3441_TMUAki_TMT10x_S_F3 56.956 40.382 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3151 497 2946 18341 22055 22055 1 DMVVDIQR Unmodified 974.48552 0.48551571 3226 Q9Y266 NUDC Nuclear migration protein nudC yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 43.668 43.341 2 0.0021359 14415 20211116_3441_TMUAki_TMT10x_S_F3 113.26 70.341 1329800 2170500 0 2629900 1241400 1046200 1304200 1050200 1123800 1029200 1671500 1238100 2027000 96151 2626800 1191100 1163600 1314100 1067000 1170600 1006100 1595500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1329800 2170500 0 2629900 1241400 1046200 1304200 1050200 1123800 1029200 1671500 1238100 2027000 96151 2626800 1191100 1163600 1314100 1067000 1170600 1006100 1595500 1 1 0 1 1 1 1 1 1 1 1 46027000 0 46027000 3152 3226 2947 18342;18343 22056;22057 22057 2 DMVVDIQRR Oxidation (M) 1146.5815 0.58154136 3226 Q9Y266 NUDC Nuclear migration protein nudC yes yes 0 0 1 1 By MS/MS By MS/MS 4 0.816 1 1 1 1 2 30.53 30.606 3 0.00053955 9257 20211116_3441_TMUAki_TMT10x_S_F3 83.998 56.997 702250 1126900 3928 1001100 1014800 1129700 781920 676270 641950 619380 892970 653890 1051100 66245 1032100 967420 1132700 800980 708770 668100 607260 853650 2 2 1 2 2 2 2 2 2 2 2 554490 890480 0 781410 834340 988640 590750 585240 550270 524990 718410 516290 830510 49876 807970 793880 985320 610710 613590 567540 515220 687820 1 1 0 1 1 1 1 1 1 1 1 147750 236430 3928 219700 180460 141050 191170 91029 91681 94384 174560 137600 220550 16369 224140 173540 147420 190270 95177 100560 92042 165830 1 1 1 1 1 1 1 1 1 1 1 25888000 21004000 4883600 3153 3226 2948 18344;18345;18346 22058;22059;22060 22059 3218 3 DMVVDIQRR Unmodified 1130.5866 0.58662674 3226 Q9Y266 NUDC Nuclear migration protein nudC yes yes 0 0 0 1 By MS/MS 4 0 1 1 35.66 35.684 3 0.00048654 8673 20211116_3431_TMUAki_TMT10x_P_F4 109.88 76.879 1608600 2276000 0 2718600 2935100 2227500 1879700 1027700 904750 957950 1812000 1497800 2125400 148270 2734800 2787500 2272600 1931700 1103400 995290 938460 1719900 1 1 0 1 1 1 1 1 1 1 1 1608600 2276000 0 2718600 2935100 2227500 1879700 1027700 904750 957950 1812000 1497800 2125400 148270 2734800 2787500 2272600 1931700 1103400 995290 938460 1719900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 84730000 84730000 0 3154 3226 2948 18347 22061 22061 1 DNALLSAIEESR Unmodified 1316.6572 0.65720872 2184 Q8N1F7 NUP93 Nuclear pore complex protein Nup93 yes yes 0 0 0 0 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 3 4 64.234 63.987 2 1.2287E-14 21773 20211116_3430_TMUAki_TMT10x_P_F3 150.69 129.39 25419000 43996000 90187 42266000 31609000 36844000 31195000 27271000 26231000 26698000 33077000 23667000 41047000 2108100 43159000 30293000 37654000 31510000 28193000 27145000 26098000 31696000 6 6 2 6 6 6 6 6 6 6 6 13734000 22808000 77389 21940000 15885000 25015000 17874000 14041000 13685000 13817000 17301000 12787000 21279000 1144200 22489000 15279000 25048000 17896000 14823000 14234000 13504000 16577000 3 3 1 3 3 3 3 3 3 3 3 11685000 21188000 12798 20326000 15725000 11829000 13321000 13230000 12546000 12880000 15776000 10880000 19768000 963900 20670000 15013000 12606000 13614000 13370000 12912000 12594000 15119000 3 3 1 3 3 3 3 3 3 3 3 3638600000 1612400000 2026200000 3155 2184 2949 18348;18349;18350;18351;18352;18353;18354 22062;22063;22064;22065;22066;22067;22068;22069 22065 8 DNFFEVFTPVFER Unmodified 1645.7777 0.77765821 2581 Q99543;Q99543-2 DNAJC2 DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed yes no 0 0 0 0 By matching By MS/MS 6.33 0.471 2 1 1 2 80.64 80.648 2 0.028513 26375 20211116_3445_TMUAki_TMT10x_S_F6 56.414 28.245 4633900 7982200 71594 7725000 7021900 5402100 6637500 4299700 3989800 4221100 5977400 4315100 7447200 484350 7864200 6727600 5621900 6670900 4424900 4245300 4125700 5704700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4633900 7982200 71594 7725000 7021900 5402100 6637500 4299700 3989800 4221100 5977400 4315100 7447200 484350 7864200 6727600 5621900 6670900 4424900 4245300 4125700 5704700 1 1 1 1 1 1 1 1 1 1 1 1471900000 245000000 1226900000 3156 2581 2950 18355;18356;18357 22070 22070 1 DNFGFIETANHDK Unmodified 1506.6739 0.67392142 346 O75534;O75534-2;O75534-3;O75534-4 CSDE1 Cold shock domain-containing protein E1 yes no 0 0 0 0 By MS/MS 5 0 1 1 49.243 49.423 3 0.10782 13291 20211116_3444_TMUAki_TMT10x_S_F5 32.387 10.83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3157 346 2951 18358 22071 22071 1 DNFHGLAIFLDTYPNDETTER Unmodified 2467.1292 0.12918286 1577 Q12907 LMAN2 Vesicular integral-membrane protein VIP36 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 1.5 2 2 2 2 75.23 75.196 3 1.5147E-07 24725 20211116_3431_TMUAki_TMT10x_P_F4 92.8 84.711 13403000 22449000 383850 20676000 16232000 21997000 16789000 16793000 15827000 16586000 17797000 12482000 20941000 1508600 21238000 15601000 22211000 16971000 17331000 16213000 16207000 17107000 6 6 6 6 6 6 6 6 6 6 6 5743300 9329300 136870 9059100 5924700 12133000 7177300 6914800 7006000 7796400 7460000 5348600 8704200 606260 9306800 5720600 12054000 7209400 7320200 7151000 7578100 7182300 3 3 3 3 3 3 3 3 3 3 3 7659600 13120000 246980 11617000 10307000 9863900 9612200 9878500 8821200 8789800 10337000 7133700 12236000 902290 11931000 9880300 10157000 9761900 10010000 9062400 8629400 9924600 3 3 3 3 3 3 3 3 3 3 3 1535700000 844830000 690860000 3158 1577 2952 18359;18360;18361;18362 22072;22073;22074;22075;22076;22077 22074 6 DNFTLIPEGTNGTEER Unmodified 1791.8275 0.82752153 1852 Q16555;Q16555-2 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 2.09 0.793 3 4 4 6 5 56.001 55.795 2;3 2.6826E-52 18383 20211116_3430_TMUAki_TMT10x_P_F3 264.22 236.74 23000000 38118000 66043 40154000 29170000 36154000 25186000 27413000 27041000 25733000 29083000 21412000 35576000 1394700 40760000 27849000 36881000 25813000 28262000 27501000 25201000 27992000 11 11 1 11 11 11 11 11 11 11 11 13939000 22444000 0 23880000 21445000 28884000 18560000 15449000 15308000 15320000 16991000 12976000 20948000 744560 24335000 20475000 28814000 18877000 16382000 15775000 14968000 16338000 6 6 0 6 6 6 6 6 6 6 6 9061200 15675000 66043 16274000 7725400 7269800 6625500 11963000 11733000 10413000 12092000 8436200 14628000 650090 16425000 7374500 8066900 6936200 11880000 11726000 10234000 11654000 5 5 1 5 5 5 5 5 5 5 5 5664500000 4222100000 1442400000 3159 1852 2953 18363;18364;18365;18366;18367;18368;18369;18370;18371;18372;18373 22078;22079;22080;22081;22082;22083;22084;22085;22086;22087;22088;22089 22082 12 DNFTLIPEGVNGIEER Unmodified 1801.8846 0.88464248 1691 Q14194-2;Q14194 CRMP1 Dihydropyrimidinase-related protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.54 1.08 3 3 4 3 6 7 69.393 69.178 2;3 2.7095E-52 23942 20211116_3430_TMUAki_TMT10x_P_F3 264.09 224.47 27381000 45213000 203730 44063000 29681000 38400000 29941000 25697000 25337000 27814000 33094000 25494000 42184000 2205500 44948000 28460000 39184000 30215000 26831000 26253000 27078000 31684000 12 12 5 12 12 12 12 12 12 12 12 14013000 22494000 116660 22025000 14896000 24712000 15834000 12970000 12679000 14425000 16405000 13048000 20988000 1154400 22542000 14305000 24745000 15915000 13823000 13169000 14028000 15710000 6 6 3 6 6 6 6 6 6 6 6 13368000 22718000 87066 22038000 14785000 13689000 14107000 12727000 12658000 13389000 16688000 12446000 21196000 1051100 22406000 14155000 14438000 14300000 13008000 13084000 13049000 15974000 6 6 2 6 6 6 6 6 6 6 6 5251000000 2004700000 3246300000 3160 1691 2954 18374;18375;18376;18377;18378;18379;18380;18381;18382;18383;18384;18385;18386 22090;22091;22092;22093;22094;22095;22096;22097;22098;22099;22100;22101;22102;22103 22094 14 DNHFAIFIIPQGR Unmodified 1526.7994 0.7993967 2204 Q8N6R0;Q8N6R0-3;Q8N6R0-4 METTL13 Methyltransferase-like protein 13 yes no 0 0 0 0 By MS/MS 8 0 1 1 62.51 62.514 3 0.0035434 18657 20211116_3447_TMUAki_TMT10x_S_F8 65.805 52.142 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3161 2204 2955 18387 22104 22104 1 DNHLLGTFDLTGIPPAPR Unmodified 1933.0058 0.005760665 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 By MS/MS By MS/MS 6.27 0.962 3 3 4 1 3 8 67.829 68.049 3 6.045E-24 21244 20211116_3445_TMUAki_TMT10x_S_F6 172.95 160.12 110440000 183610000 3002500 173030000 127930000 178200000 131050000 128640000 120910000 126360000 138390000 102850000 171280000 11573000 177340000 122880000 180100000 132450000 133230000 124070000 123500000 132960000 17 17 12 17 17 17 17 17 17 17 17 60450000 97475000 1708700 97472000 72628000 126490000 76430000 71231000 68321000 67554000 76181000 56295000 90955000 6491600 99871000 69820000 125820000 77076000 75101000 70139000 66128000 73246000 9 9 6 9 9 9 9 9 9 9 9 49994000 86131000 1293800 75559000 55299000 51712000 54615000 57413000 52590000 58805000 62208000 46557000 80329000 5080900 77473000 53062000 54280000 55372000 58127000 53931000 57375000 59712000 8 8 6 8 8 8 8 8 8 8 8 7183700000 3051500000 4132200000 3162 614 2956 18388;18389;18390;18391;18392;18393;18394;18395;18396;18397;18398 22105;22106;22107;22108;22109;22110;22111;22112;22113;22114;22115;22116;22117;22118;22119;22120;22121;22122;22123;22124;22125;22126;22127 22118 23 DNHVVAAGGVEK Unmodified 1194.5993 0.59929991 1782 Q15274 QPRT Nicotinate-nucleotide pyrophosphorylase [carboxylating] yes yes 0 0 0 0 By MS/MS 3 0 1 1 31.593 31.34 3 0.079334 9582 20211116_3441_TMUAki_TMT10x_S_F3 39.629 24.257 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3163 1782 2957 18399 22128 22128 1 DNIQAMVIVPTR Oxidation (M) 1371.718 0.71803484 810 P26196 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 0 0 1 0 By MS/MS 4.5 0.5 1 1 2 45.762 45.94 2 0.0065395 11961 20211116_3444_TMUAki_TMT10x_S_F5 70.942 56.784 861210 1561600 7708.2 1488400 693210 899190 708550 2040900 1926400 1478700 1528000 801920 1456900 76231 1514700 665540 978030 755620 2000600 1892400 1467300 1486300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 861210 1561600 7708.2 1488400 693210 899190 708550 2040900 1926400 1478700 1528000 801920 1456900 76231 1514700 665540 978030 755620 2000600 1892400 1467300 1486300 1 1 1 1 1 1 1 1 1 1 1 111950000 0 111950000 3164 810 2958 18400;18401 22129 22129 960 1 DNIQGITK Unmodified 887.47125 0.47124585 1366 P62805 HIST1H4A Histone H4 yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 38.143 38.288 2 0.00096624 9086 20211116_3444_TMUAki_TMT10x_S_F5 130.66 69.896 1422000 2201500 0 2685400 1019000 978160 1701200 945450 1098600 974940 1605900 1324000 2056000 102170 2679900 993600 1101100 1671300 963800 1162000 950970 1533500 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1422000 2201500 0 2685400 1019000 978160 1701200 945450 1098600 974940 1605900 1324000 2056000 102170 2679900 993600 1101100 1671300 963800 1162000 950970 1533500 2 2 0 2 2 2 2 2 2 2 2 98376000 0 98376000 3165 1366 2959 18402;18403;18404 22130;22131;22132 22132 3 DNIQGITKPAIR Unmodified 1324.7463 0.7462985 1366 P62805 HIST1H4A Histone H4 yes yes 0 0 0 1 By MS/MS By MS/MS 5.91 1.9 2 1 1 3 2 6 14 4 12 21 36.3 36.567 2;3 1.4458E-35 9925 20211116_3434_TMUAki_TMT10x_P_F6 251.51 235.13 660640000 1058400000 8104000 1308300000 3153000000 1919200000 1050900000 1120900000 1529300000 936240000 1258200000 615130000 988540000 91952000 1326200000 2970500000 1899600000 1190700000 1174400000 1525300000 921990000 1222200000 42 42 25 42 42 42 42 42 42 42 42 562620000 899500000 4589100 1104000000 3074900000 1818200000 927650000 955660000 1317600000 799190000 1070200000 523850000 840090000 81102000 1122500000 2894300000 1788800000 1065300000 1010500000 1314600000 786980000 1040000000 18 18 8 18 18 18 18 18 18 18 18 98018000 158910000 3515000 204350000 78078000 101050000 123210000 165270000 211720000 137050000 188060000 91289000 148450000 10850000 203720000 76195000 110760000 125360000 163950000 210670000 135010000 182150000 24 24 17 24 24 24 24 24 24 24 24 184920000000 116860000000 68055000000 3166 1366 2960 18405;18406;18407;18408;18409;18410;18411;18412;18413;18414;18415;18416;18417;18418;18419;18420;18421;18422;18423;18424;18425;18426;18427;18428;18429;18430;18431;18432;18433;18434;18435;18436;18437 22133;22134;22135;22136;22137;22138;22139;22140;22141;22142;22143;22144;22145;22146;22147;22148;22149;22150;22151;22152;22153;22154;22155;22156;22157;22158;22159;22160;22161;22162;22163;22164;22165;22166;22167;22168;22169;22170;22171;22172;22173;22174;22175;22176;22177;22178;22179;22180;22181;22182 22142 50 DNIQGITKPAIRR Unmodified 1480.8474 0.84740953 1366 P62805 HIST1H4A Histone H4 yes yes 0 0 0 2 By MS/MS By MS/MS 1.83 0.687 4 6 2 4 8 33.184 33.114 2;3;4 3.9933E-09 5024 20211116_3440_TMUAki_TMT10x_S_F2 132.05 112.47 62034000 98096000 701100 111040000 158600000 102060000 75093000 115730000 134860000 83335000 110210000 57761000 91582000 6648800 112230000 149980000 104830000 82386000 116000000 133700000 82723000 107070000 18 18 11 18 18 18 18 18 18 18 18 23509000 34604000 147370 41191000 105420000 67155000 32799000 42699000 50199000 30117000 40182000 21888000 32314000 2903200 41945000 99246000 66262000 37606000 44271000 49952000 29932000 39072000 7 7 4 7 7 7 7 7 7 7 7 38525000 63492000 553730 69845000 53173000 34901000 42294000 73027000 84660000 53218000 70024000 35873000 59268000 3745500 70282000 50734000 38567000 44781000 71732000 83753000 52791000 68002000 11 11 7 11 11 11 11 11 11 11 11 41287000000 28811000000 12476000000 3167 1366 2961 18438;18439;18440;18441;18442;18443;18444;18445;18446;18447;18448;18449 22183;22184;22185;22186;22187;22188;22189;22190;22191;22192;22193;22194;22195;22196;22197;22198;22199 22190 17 DNKETFGEMSDGDVQEQLR Oxidation (M) 2212.9543 0.95425496 1458 P84157 MXRA7 Matrix-remodeling-associated protein 7 yes yes 0 0 1 1 By MS/MS 1.5 0.5 1 1 2 41.427 41.286 3 5.1372E-12 12048 20211116_3429_TMUAki_TMT10x_P_F2 123 108.23 1264000 2054300 0 2784900 4209800 4113500 2206900 1715300 2500900 1391400 2017000 1176800 1919600 133450 2809300 3985400 4054700 2352400 1855300 2514200 1372200 1960800 2 2 0 2 2 2 2 2 2 2 2 1264000 2054300 0 2784900 4209800 4113500 2206900 1715300 2500900 1391400 2017000 1176800 1919600 133450 2809300 3985400 4054700 2352400 1855300 2514200 1372200 1960800 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 409620000 409620000 0 3168 1458 2962 18450;18451 22200;22201 22200 1960 2 DNLAEELEGVAGR Unmodified 1371.663 0.66302238 1080 P48681 NES Nestin yes yes 0 0 0 0 By MS/MS By MS/MS 1.6 0.49 2 3 2 3 63.988 63.862 2;3 1.7332E-29 19676 20211116_3428_TMUAki_TMT10x_P_F1 241.31 200.19 16200000 27880000 183440 26973000 15542000 24908000 18228000 14646000 15155000 15621000 18800000 15085000 26012000 1432700 27550000 14977000 25271000 18254000 15438000 15681000 15216000 18023000 3 3 2 3 3 3 3 3 3 3 3 11370000 19328000 183440 19633000 11082000 20226000 13390000 10343000 10739000 10902000 13417000 10588000 18036000 1109600 20016000 10695000 20346000 13380000 11032000 11136000 10625000 12860000 2 2 2 2 2 2 2 2 2 2 2 4830100 8552500 0 7340000 4460500 4681900 4837700 4303100 4416200 4718600 5383400 4496800 7975800 323130 7533900 4281800 4925100 4874300 4406700 4545500 4591300 5163200 1 1 0 1 1 1 1 1 1 1 1 1474000000 826420000 647620000 3169 1080 2963 18452;18453;18454;18455;18456 22202;22203;22204;22205;22206;22207 22203 6 DNLAQQSFNMEQANYTIQSLK Oxidation (M) 2458.1435 0.14345271 3040 Q9NZZ3;Q9NZZ3-2 CHMP5 Charged multivesicular body protein 5 yes no 0 0 1 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 65.801 65.827 3 1.6879E-15 20017 20211116_3444_TMUAki_TMT10x_S_F5 140.63 116.59 11595000 20072000 13199 19029000 13258000 16454000 13134000 11276000 12730000 12142000 14169000 10794000 18725000 796870 19448000 12697000 16805000 13316000 11752000 13020000 11823000 13624000 8 8 2 8 8 8 8 8 8 8 8 4891100 8184800 0 7957700 5195000 9256900 5417400 4603200 4739900 5124800 5802700 4553700 7636500 366390 8153700 4983900 9245600 5462500 4930700 4889400 4983600 5564700 4 4 0 4 4 4 4 4 4 4 4 6703700 11887000 13199 11072000 8063400 7197400 7716200 6673100 7990600 7017600 8366200 6240700 11089000 430480 11295000 7713500 7559400 7853500 6821500 8130400 6839600 8059000 4 4 2 4 4 4 4 4 4 4 4 3499900000 1941700000 1558200000 3170 3040 2964 18457;18458;18459;18460 22208;22209;22210;22211;22212;22213;22214;22215 22212 3086 8 DNLAQQSFNMEQANYTIQSLK Unmodified 2442.1485 0.14853809 3040 Q9NZZ3;Q9NZZ3-2 CHMP5 Charged multivesicular body protein 5 yes no 0 0 0 0 By MS/MS 8 0 1 1 75.296 75.189 3 0.10605 23869 20211116_3447_TMUAki_TMT10x_S_F8 26.046 15.259 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3171 3040 2964 18461 22216 22216 1 DNLEFFLAGIGR Unmodified 1350.6932 0.6932003 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 79.32 79.332 2 2.3565E-16 25453 20211116_3434_TMUAki_TMT10x_P_F6 203.02 173.55 24612000 40631000 30995 35502000 24283000 35078000 28253000 22556000 22918000 24725000 27577000 22914000 37894000 1438800 36574000 23367000 35479000 28285000 23630000 23714000 24059000 26458000 4 4 1 4 4 4 4 4 4 4 4 13052000 22213000 30995 19532000 13750000 23054000 14970000 13762000 12700000 14133000 14660000 12151000 20717000 892600 20168000 13202000 23060000 15051000 14473000 13089000 13788000 14082000 2 2 1 2 2 2 2 2 2 2 2 11560000 18418000 0 15970000 10534000 12024000 13282000 8793700 10218000 10593000 12917000 10763000 17177000 546210 16406000 10165000 12420000 13234000 9157700 10625000 10271000 12377000 2 2 0 2 2 2 2 2 2 2 2 5332300000 2482600000 2849700000 3172 1092 2965 18462;18463;18464;18465;18466 22217;22218;22219;22220;22221 22218 5 DNLGSDDPEGDIPVLLQAVLAR Unmodified 2306.1754 0.17540477 1980 Q6KC79;Q6KC79-2;Q6KC79-3 NIPBL Nipped-B-like protein yes no 0 0 0 0 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 82.146 82.136 3 0.056564 27204 20211116_3428_TMUAki_TMT10x_P_F1 33.665 21.689 2373200 3679600 30827 3656100 2528100 3507800 2448500 2023700 2270400 2016000 2890000 2209800 3433400 221250 3729300 2423500 3549300 2482300 2132200 2339500 1969300 2768700 2 2 1 2 2 2 2 2 2 2 2 1795000 2782200 30827 2493800 1646200 2921100 1717800 1576800 1650800 1552600 1995100 1671500 2595000 175460 2570900 1582100 2919300 1736600 1670300 1694600 1517400 1914000 1 1 1 1 1 1 1 1 1 1 1 578190 897430 0 1162300 881860 586640 730710 446890 619600 463370 894890 538310 838380 45788 1158400 841350 630000 745650 461920 644960 451870 854740 1 1 0 1 1 1 1 1 1 1 1 290720000 257710000 33016000 3173 1980 2966 18467;18468;18469 22222;22223 22222 2 DNLIVPILEEEVQNSVSGESEA Unmodified 2370.1438 0.14382987 3266 Q9Y3A3;Q9Y3A3-2;Q9Y3A3-3 MOB4 MOB-like protein phocein yes no 0 0 0 0 By MS/MS By MS/MS 1.7 0.64 4 5 1 3 7 49.843 49.793 3 1.0651E-06 27333 20211116_3428_TMUAki_TMT10x_P_F1 82.504 73.712 9390100 12979000 5851.1 12416000 8264200 11070000 9645500 7349700 6413900 8199800 9318000 8741900 12109000 361530 12686000 7948900 11277000 9611600 7685900 6769500 7973400 8898800 8 8 3 8 8 8 8 8 8 8 8 2976300 4302400 0 4249000 2772100 5123700 3309300 2788400 2555900 2995300 3674900 2770500 4014400 156630 4351500 2665900 5113300 3305400 2959100 2672900 2916900 3510400 2 2 0 2 2 2 2 2 2 2 2 6413800 8676800 5851.1 8166800 5492100 5946600 6336200 4561300 3858000 5204500 5643100 5971400 8094500 204900 8334300 5283100 6163800 6306200 4726800 4096700 5056500 5388500 6 6 3 6 6 6 6 6 6 6 6 5493400000 3305000000 2188400000 3174 3266 2967 18470;18471;18472;18473;18474;18475;18476;18477;18478;18479 22224;22225;22226;22227;22228;22229;22230;22231;22232;22233;22234;22235 22224 12 DNLSYIEHIFEISR Unmodified 1734.8577 0.85769944 1772 Q15121;Q15121-2 PEA15 Astrocytic phosphoprotein PEA-15 yes no 0 0 0 0 By MS/MS 3 0 1 1 78.188 78.118 3 0.069048 28463 20211116_3441_TMUAki_TMT10x_S_F3 38.613 25.412 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3175 1772 2968 18480 22236 22236 1 DNLTLWTSDMQGDGEEQNK Oxidation (M) 2195.9277 0.92770586 1342 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 1 0 By MS/MS By MS/MS 2.44 1.07 2 3 2 2 5 4 59.16 58.982 2;3 1.1016E-61 19289 20211116_3429_TMUAki_TMT10x_P_F2 237.27 223.87 57569000 90578000 388920 115260000 67353000 64024000 60892000 32483000 36076000 38972000 63856000 53599000 84611000 4488800 115080000 64392000 67675000 61335000 34813000 38773000 37794000 60740000 15 15 7 15 15 15 15 15 15 15 15 27884000 41301000 75537 54283000 44562000 45519000 38181000 15799000 16660000 18552000 29506000 25960000 38587000 2216200 54330000 42546000 46244000 38396000 17646000 18347000 18006000 28065000 7 7 2 7 7 7 7 7 7 7 7 29685000 49277000 313380 60978000 22791000 18505000 22711000 16684000 19416000 20420000 34350000 27639000 46024000 2272600 60746000 21846000 21431000 22939000 17167000 20426000 19789000 32674000 8 8 5 8 8 8 8 8 8 8 8 8523200000 5260900000 3262300000 3176 1342 2969 18481;18482;18483;18484;18485;18486;18487;18488;18489 22237;22238;22239;22240;22241;22242;22243;22244;22245;22246;22247;22248;22249;22250;22251;22252 22240 1798 16 DNLTLWTSDMQGDGEEQNK Unmodified 2179.9328 0.93279124 1342 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 0 0 By MS/MS By MS/MS 2.71 1.03 1 2 2 2 4 3 66.44 66.245 3 7.5128E-41 20936 20211116_3440_TMUAki_TMT10x_S_F2 200.9 190.56 34954000 55675000 346240 72101000 38158000 36212000 38794000 22410000 20503000 21433000 37158000 32546000 52012000 2982500 71858000 36606000 38794000 38751000 23453000 22250000 20973000 35329000 11 11 8 11 11 11 11 11 11 11 11 17584000 26557000 170630 36964000 23065000 24214000 23232000 11575000 10283000 10249000 18397000 16372000 24819000 1428300 36783000 22113000 25170000 23156000 12367000 11316000 10064000 17495000 5 5 3 5 5 5 5 5 5 5 5 17370000 29119000 175610 35138000 15093000 11998000 15562000 10836000 10221000 11184000 18761000 16174000 27193000 1554200 35075000 14493000 13624000 15595000 11086000 10934000 10909000 17834000 6 6 5 6 6 6 6 6 6 6 6 8185900000 5090800000 3095100000 3177 1342 2969 18490;18491;18492;18493;18494;18495;18496 22253;22254;22255;22256;22257;22258;22259;22260;22261;22262;22263 22258 11 DNLTLWTSDMQGDGEEQNKEALQDVEDENQ Oxidation (M) 3466.459 0.45904536 1342 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 1 1 By MS/MS By MS/MS 1 0 2 1 1 72.519 72.455 3 4.2672E-06 25125 20211116_3439_TMUAki_TMT10x_S_F1 64.733 55.82 8620300 17263000 43828 7852200 19292000 27333000 20062000 14107000 10960000 14951000 15923000 8025900 16073000 521870 8966500 18514000 26347000 20028000 15036000 11724000 14567000 15206000 6 6 2 6 6 6 6 6 6 6 6 4795500 9231600 0 4314600 8801500 19337000 12819000 7244900 6137400 7843100 8322000 4464900 8595700 144820 4973500 8538800 18501000 12586000 7994300 6613700 7635300 7960300 3 3 0 3 3 3 3 3 3 3 3 3824800 8031100 43828 3537600 10491000 7996700 7243300 6862200 4822700 7108100 7600700 3561000 7477000 377050 3993000 9975000 7845900 7442000 7041700 5110700 6932000 7246100 3 3 2 3 3 3 3 3 3 3 3 3510000000 2343300000 1166700000 3178 1342 2970 18497;18498 22264;22265;22266;22267;22268;22269 22268 1798 6 DNLTLWTSDQQDDDGGEGNN Unmodified 2192.873 0.87302775 1331 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 0 0 0 0 By MS/MS 1 0 1 1 70.898 70.898 2 2.2514E-12 22541 20211116_3428_TMUAki_TMT10x_P_F1 123.64 115.91 594960 1016800 0 1219700 863370 1088800 948420 442310 445190 417740 763280 553930 949580 48204 1228000 829660 1102800 942000 481600 486220 409000 726460 1 1 0 1 1 1 1 1 1 1 1 594960 1016800 0 1219700 863370 1088800 948420 442310 445190 417740 763280 553930 949580 48204 1228000 829660 1102800 942000 481600 486220 409000 726460 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 667150000 667150000 0 3179 1331 2971 18499 22270 22270 1 DNLTLWTSDQQDEEAGEGN Unmodified 2120.8771 0.8770505 1515 Q04917 YWHAH 14-3-3 protein eta yes yes 0 0 0 0 By MS/MS 1 0 1 1 71.04 71.04 2 8.9632E-06 22741 20211116_3428_TMUAki_TMT10x_P_F1 88.552 74.873 544300 1040000 1307.5 918340 594970 1033600 859930 626340 625060 566130 620990 506810 969940 47055 947170 577230 1036700 851140 655570 646030 555390 599170 1 1 1 1 1 1 1 1 1 1 1 544300 1040000 1307.5 918340 594970 1033600 859930 626340 625060 566130 620990 506810 969940 47055 947170 577230 1036700 851140 655570 646030 555390 599170 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 470130000 470130000 0 3180 1515 2972 18500 22271 22271 1 DNLTLWTSDSAGEECDAAEGAEN Unmodified 2453.9765 0.97650654 825 P27348 YWHAQ 14-3-3 protein theta yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 4 2 2 73.436 73.381 2;3 1.974E-27 23547 20211116_3428_TMUAki_TMT10x_P_F1 165.33 162.55 9143700 16922000 171580 16896000 11556000 13046000 12053000 8017400 7797100 8967200 13092000 8514400 15790000 723370 17181000 11099000 13415000 12069000 8433800 8306400 8718700 12466000 8 8 2 8 8 8 8 8 8 8 8 4341600 7973400 55400 8248100 5339700 8743200 6360400 3979200 3835600 4153600 5974700 4042600 7441100 393620 8402400 5146900 8769400 6320100 4291500 4088400 4049400 5697400 4 4 1 4 4 4 4 4 4 4 4 4802200 8949100 116180 8647700 6216500 4303200 5693100 4038200 3961600 4813600 7117600 4471900 8349300 329750 8778400 5952000 4645800 5748500 4142300 4218000 4669300 6768400 4 4 1 4 4 4 4 4 4 4 4 4103500000 2365500000 1738000000 3181 825 2973 18501;18502;18503;18504 22272;22273;22274;22275;22276;22277;22278;22279 22274 8 DNLTLWTSDTQGDEAEAGEGGEN Unmodified 2407.9888 0.98878579 1395 P63104;P63104-2 YWHAZ 14-3-3 protein zeta/delta yes no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 4 2 3 3 72.247 72.148 2;3 4.7278E-46 23054 20211116_3428_TMUAki_TMT10x_P_F1 214.83 210.28 14984000 26694000 89140 24103000 18276000 24911000 19676000 15336000 14953000 16714000 19819000 13951000 24898000 1109900 24784000 17557000 25113000 19739000 16117000 15591000 16267000 18968000 11 11 4 11 11 11 11 11 11 11 11 8889100 15260000 66497 13783000 10468000 18656000 12874000 9065000 9074400 10124000 11612000 8277000 14234000 665730 14238000 10101000 18490000 12816000 9732400 9487900 9844400 11123000 6 6 3 6 6 6 6 6 6 6 6 6095100 11434000 22643 10320000 7808200 6254800 6801900 6271300 5878300 6589400 8207200 5674500 10665000 444210 10546000 7456000 6623100 6923400 6385000 6103200 6422500 7845100 5 5 1 5 5 5 5 5 5 5 5 5036800000 3202800000 1834000000 3182 1395 2974 18505;18506;18507;18508;18509;18510 22280;22281;22282;22283;22284;22285;22286;22287;22288;22289;22290 22282 11 DNLTLWTSENQGDEGDAGEGEN Unmodified 2349.9469 0.94692097 895 P31946;P31946-2 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 1 0 3 2 1 70.098 70.013 2;3 3.4174E-05 22176 20211116_3428_TMUAki_TMT10x_P_F1 73.21 69.789 11337000 18730000 136280 16567000 12165000 13821000 12043000 6424000 8088400 8975400 12697000 10557000 17469000 703610 17013000 11668000 14083000 12100000 6981200 8565200 8660700 12106000 4 4 2 4 4 4 4 4 4 4 4 6815200 10830000 66138 8981400 6622200 9102600 6716200 2673800 4492000 4627400 6811200 6346200 10099000 264740 9294900 6356000 9121200 6738800 3101500 4749500 4438900 6498700 2 2 1 2 2 2 2 2 2 2 2 4521800 7900000 70145 7585300 5542700 4718400 5326900 3750200 3596400 4348000 5885800 4210600 7370400 438870 7717700 5312400 4961900 5361100 3879700 3815700 4221800 5607000 2 2 1 2 2 2 2 2 2 2 2 2393000000 1372500000 1020500000 3183 895 2975 18511;18512;18513 22291;22292;22293;22294;22295 22291 5 DNMAQEGVILDDVDSSVCR Oxidation (M) 2137.9256 0.92559737 2687 Q9BV86 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed yes yes 0 0 1 0 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 59.293 58.994 3 8.6878E-09 19747 20211116_3439_TMUAki_TMT10x_S_F1 114.9 99.981 1586600 2450800 7220.6 2655400 1427400 1284500 1383900 1453300 1699500 1419300 1954400 1477400 2287600 136040 2674000 1368000 1397000 1415800 1468100 1724200 1387600 1877500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1586600 2450800 7220.6 2655400 1427400 1284500 1383900 1453300 1699500 1419300 1954400 1477400 2287600 136040 2674000 1368000 1397000 1415800 1468100 1724200 1387600 1877500 1 1 1 1 1 1 1 1 1 1 1 358260000 0 358260000 3184 2687 2976 18514;18515 22296;22297 22297 2895 2 DNNGVIGLLEPMKK Unmodified 1526.8127 0.81266351 723 P18754;P18754-2 RCC1 Regulator of chromosome condensation yes no 0 0 0 1 By MS/MS 7 0 1 1 63.382 64.054 3 0.0073955 21035 20211116_3435_TMUAki_TMT10x_P_F7 61.725 48.525 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3185 723 2977 18516 22298 22298 1 DNNLLGK Unmodified 772.40792 0.40791731 615 P11142;P11142-2;P54652 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.75 0.433 1 3 3 1 40.836 40.894 2 0.0064965 11083 20211116_3442_TMUAki_TMT10x_S_F4 108.7 41.665 546130 896970 8361.5 870180 790560 921840 661770 429400 471850 430690 666510 508570 836870 56494 890390 755300 924860 672120 461480 495240 420580 636930 1 1 1 1 1 1 1 1 1 1 1 546130 896970 8361.5 870180 790560 921840 661770 429400 471850 430690 666510 508570 836870 56494 890390 755300 924860 672120 461480 495240 420580 636930 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 238320000 238320000 0 3186 615 2978 18517;18518;18519;18520 22299;22300;22301 22301 3 DNNLLGKFELTGIPPAPR Unmodified 1951.0527 0.052710858 615 P11142 HSPA8 Heat shock cognate 71 kDa protein yes yes 0 0 0 1 By MS/MS 8 0 1 1 72.556 72.602 3 1.2779E-05 23360 20211116_3436_TMUAki_TMT10x_P_F8 85.855 77.992 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3187 615 2979 18521 22302 22302 1 DNNLLGR Unmodified 800.41407 0.41406533 596;701 P0DMV8;P0DMV9;P0DMV8-2;P17066 HSPA1A;HSPA1B;HSPA6 Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 6 no no 0 0 0 0 By MS/MS 3 0 1 1 33.926 33.687 2 0.009957 10491 20211116_3441_TMUAki_TMT10x_S_F3 98.523 58.877 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3188 596;701 2980 18522 22303 22303 1 DNNQFASASLDR Unmodified 1336.6008 0.60075648 936 P35606;P35606-2 COPB2 Coatomer subunit beta' yes no 0 0 0 0 By MS/MS 2 0 1 1 36.142 36.241 2 0.0023384 8648 20211116_3440_TMUAki_TMT10x_S_F2 74.537 51.218 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3189 936 2981 18523 22304 22304 1 DNPGVVTCLDEAR Unmodified 1444.6616 0.66164217 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.09 0.793 3 4 4 6 5 43.517 43.398 2;3 8.674E-65 12935 20211116_3429_TMUAki_TMT10x_P_F2 317.81 288.9 15807000 24634000 113870 32362000 32894000 31459000 17834000 24743000 27669000 19280000 25136000 14717000 23015000 1493000 32455000 31158000 31953000 19182000 25332000 27629000 19055000 24326000 12 12 4 12 12 12 12 12 12 12 12 9423700 14096000 113870 18305000 28083000 27761000 14131000 13711000 15540000 10702000 14318000 8774800 13168000 1099400 18518000 26580000 27382000 15107000 14559000 15705000 10576000 13850000 7 7 4 7 7 7 7 7 7 7 7 6383300 10538000 0 14057000 4811600 3698000 3702800 11032000 12129000 8578300 10818000 5942600 9846500 393570 13937000 4578300 4571100 4074800 10773000 11924000 8479100 10476000 5 5 0 5 5 5 5 5 5 5 5 2721700000 1838100000 883560000 3190 769 2982 18524;18525;18526;18527;18528;18529;18530;18531;18532;18533;18534 22305;22306;22307;22308;22309;22310;22311;22312;22313;22314;22315;22316 22308 12 DNPLDPVLAK Unmodified 1080.5815 0.58152458 2409 Q96AG4 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 0 0 0 0 By MS/MS By MS/MS 4.25 0.433 3 1 3 1 57.906 58.069 2 1.1752E-08 18195 20211116_3442_TMUAki_TMT10x_S_F4 132.78 108.44 3218600 4431800 0 6071300 5078000 6034600 3751400 3440500 3156800 2976400 3727300 2996800 4141400 287670 6077400 4835300 6091700 3856100 3615100 3257700 2926000 3577900 1 1 0 1 1 1 1 1 1 1 1 3218600 4431800 0 6071300 5078000 6034600 3751400 3440500 3156800 2976400 3727300 2996800 4141400 287670 6077400 4835300 6091700 3856100 3615100 3257700 2926000 3577900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 573040000 573040000 0 3191 2409 2983 18535;18536;18537;18538 22317;22318;22319 22319 3 DNPQTHYYAVAVVK Unmodified 1603.7995 0.79945628 49 CON__Q29443;CON__Q0IIK2 yes no 0 0 0 0 By MS/MS By MS/MS 6 0.707 1 2 1 2 2 43.104 43.211 3 1.8395E-09 10682 20211116_3434_TMUAki_TMT10x_P_F6 130.24 116.27 + 4989500 7518300 7786.4 8242600 13790000 13342000 7211500 9234500 10472000 7662700 8307700 4645300 7018100 484180 8433900 13054000 13185000 7759900 9549200 10434000 7548500 8081100 3 3 1 3 3 3 3 3 3 3 3 3750800 5582700 0 6230600 12500000 12211000 6018500 6809000 7605400 5503500 6251400 3491800 5211700 373500 6399900 11819000 11950000 6492900 7156500 7619700 5428800 6072400 2 2 0 2 2 2 2 2 2 2 2 1238800 1935600 7786.4 2012000 1289800 1131000 1193000 2425500 2866700 2159200 2056300 1153500 1806400 110670 2034000 1234800 1235600 1267000 2392800 2814400 2119700 2008700 1 1 1 1 1 1 1 1 1 1 1 731870000 614450000 117420000 3192 49 2984 18539;18540;18541;18542 22320;22321;22322;22323 22321 4 DNRVVTMEVEAR Oxidation (M) 1433.6933 0.69327665 2608 Q99829 CPNE1 Copine-1 yes yes 0 0 1 1 By MS/MS 2 0 1 1 30.906 30.68 3 0.0012453 7732 20211116_3429_TMUAki_TMT10x_P_F2 78.139 65.183 354430 585780 3045.3 571790 526430 563860 373070 295270 306950 273870 482240 330040 546540 34632 584190 501090 568870 384390 313130 321380 268360 459780 1 1 1 1 1 1 1 1 1 1 1 354430 585780 3045.3 571790 526430 563860 373070 295270 306950 273870 482240 330040 546540 34632 584190 501090 568870 384390 313130 321380 268360 459780 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34598000 34598000 0 3193 2608 2985 18543 22324 22324 2844 1 DNRVVTMEVEAR Unmodified 1417.6984 0.69836203 2608 Q99829 CPNE1 Copine-1 yes yes 0 0 0 1 By MS/MS 2 0 1 1 34.695 34.473 3 2.0472E-05 9291 20211116_3429_TMUAki_TMT10x_P_F2 96.707 77.08 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3194 2608 2985 18544 22325 22325 1 DNSDFDLLTVSETANEPPQDEGNSFNSPR Unmodified 3194.3912 0.3912238 185 O15371;O15371-2;O15371-3 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 73.218 73.152 3;4 1.5349E-52 25477 20211116_3439_TMUAki_TMT10x_S_F1 200.09 193.52 4804900 8964700 26744 7218400 5537900 7772000 5494400 5315800 4816200 4937000 6195000 4473600 8358500 376090 7495600 5306800 7828200 5554500 5517300 4978200 4837400 5933400 4 4 1 4 4 4 4 4 4 4 4 3078900 5376300 0 4253900 3235800 5757100 3475700 3216000 3020500 2891400 3590600 2866500 5012400 229700 4441400 3106800 5715100 3499000 3388300 3113000 2837200 3446100 1 1 0 1 1 1 1 1 1 1 1 1726100 3588400 26744 2964500 2302200 2014900 2018600 2099800 1795700 2045700 2604300 1607100 3346000 146390 3054200 2200000 2113100 2055500 2129000 1865200 2000100 2487300 3 3 1 3 3 3 3 3 3 3 3 2170800000 941250000 1229600000 3195 185 2986 18545;18546;18547 22326;22327;22328;22329 22328 4 DNSGLEVDVAEYKEEELLK Unmodified 2179.0532 0.053223947 1488 Q01826;Q01826-2 SATB1 DNA-binding protein SATB1 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 72.095 72.031 3 1.1836E-23 23006 20211116_3428_TMUAki_TMT10x_P_F1 162.81 129.88 17465000 26394000 70056 30886000 12240000 12316000 13437000 5510900 6898600 7309800 14108000 16262000 24645000 1401500 30914000 11768000 13539000 13364000 6000400 7560100 7065000 13387000 3 3 2 3 3 3 3 3 3 3 3 7730700 11102000 55146 12924000 5334800 7101600 5773200 2188800 2840300 2842100 5703100 7198400 10366000 658770 12969000 5129700 7483400 5742300 2492900 3119400 2748900 5412900 1 1 1 1 1 1 1 1 1 1 1 9734300 15292000 14910 17962000 6905000 5214400 7663500 3322100 4058300 4467700 8405400 9063400 14279000 742690 17945000 6638300 6055900 7622200 3507400 4440700 4316200 7973800 2 2 1 2 2 2 2 2 2 2 2 899950000 568100000 331850000 3196 1488 2987 18548;18549 22330;22331;22332 22330 3 DNSTMGYMAAK 2 Oxidation (M) 1219.4849 0.48492336 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 2 0 By matching By MS/MS 4.67 0.471 1 2 1 2 31.362 31.467 2;3 0.021831 6149 20211116_3444_TMUAki_TMT10x_S_F5 54.7 38.475 89108 148970 1853 143950 100280 73035 111190 57964 50397 56979 120690 82982 138980 6486.2 146150 96539 78439 110340 59664 56425 55689 114250 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 89108 148970 1853 143950 100280 73035 111190 57964 50397 56979 120690 82982 138980 6486.2 146150 96539 78439 110340 59664 56425 55689 114250 2 2 1 2 2 2 2 2 2 2 2 22401000 18263000 4137700 3197 544 2988 18550;18551;18552 22333;22334 22334 482;483 2 DNSTMGYMMAK 3 Oxidation (M) 1295.4832 0.4832088 553 P08238;Q58FF7 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 0 0 3 0 By MS/MS By MS/MS 3.8 1.17 1 1 1 2 3 2 31.036 30.962 3 0.0019572 6737 20211116_3431_TMUAki_TMT10x_P_F4 72.29 66.386 1024900 1645500 29280 1684700 2120000 1586600 1254500 875200 938770 789670 1294500 954540 1535500 124650 1714400 2012800 1606400 1308000 923190 981470 774750 1237700 5 5 4 5 5 5 5 5 5 5 5 666510 1078200 21805 1092400 1770500 1281100 862070 593260 601030 520510 854130 620750 1006100 91042 1116200 1676200 1278000 913860 635720 631850 511350 816120 2 2 2 2 2 2 2 2 2 2 2 358440 567280 7475.1 592270 349500 305480 392460 281940 337730 269160 440320 333790 529420 33607 598160 336650 328360 394150 287460 349620 263400 421580 3 3 2 3 3 3 3 3 3 3 3 203340000 161500000 41831000 3198 553 2989 18553;18554;18555;18556;18557 22335;22336;22337;22338;22339 22335 505;506;507 5 DNSTMGYMMAK 2 Oxidation (M) 1279.4883 0.48829418 553 P08238;Q58FF7 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 0 0 2 0 By MS/MS By MS/MS 4.5 1 1 4 1 2 3 5 35.703 35.749 2;3 0.0017198 8776 20211116_3431_TMUAki_TMT10x_P_F4 69.815 56.835 846540 1314800 32876 1738600 1345100 918180 923500 736390 751330 678020 1069500 788460 1228500 107740 1731400 1281100 981900 953460 756140 783170 664600 1021900 7 7 6 7 7 7 7 7 7 7 7 293930 458770 15706 576260 836820 545130 406170 275620 297130 236990 355870 273800 428520 46610 579120 792500 551210 431140 292670 309140 233050 341480 2 2 2 2 2 2 2 2 2 2 2 552610 856070 17170 1162300 508240 373050 517330 460780 454190 441030 713650 514660 799950 61125 1152300 488590 430690 522320 463470 474030 431550 680400 5 5 4 5 5 5 5 5 5 5 5 114500000 83047000 31457000 3199 553 2989 18558;18559;18560;18561;18562;18563;18564;18565 22340;22341;22342;22343;22344 22340 505;506;507 5 DNTCVVEFQFMLPTSHPNR Unmodified 2291.0463 0.046321626 1591 Q13085;Q13085-4;Q13085-3;Q13085-2 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 0 0 0 0 By MS/MS 7 0 1 1 66.568 66.942 3 0.007563 22774 20211116_3446_TMUAki_TMT10x_S_F7 49.528 38.74 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3200 1591 2990 18566 22345 22345 1 DNTINLIHTFR Unmodified 1342.6993 0.69934831 168 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 49.378 49.478 3 0.030545 15185 20211116_3435_TMUAki_TMT10x_P_F7 55.196 41.038 2665000 4281500 0 4749500 5871500 6274100 3395200 3991200 3744900 3695700 4040000 2480800 3996800 191930 4835000 5562800 6246300 3584200 4164400 3805000 3621600 3888100 1 1 0 1 1 1 1 1 1 1 1 2665000 4281500 0 4749500 5871500 6274100 3395200 3991200 3744900 3695700 4040000 2480800 3996800 191930 4835000 5562800 6246300 3584200 4164400 3805000 3621600 3888100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 347650000 347650000 0 3201 168 2991 18567;18568 22346;22347 22347 2 DNTRPGANSPEMWSEAIK Oxidation (M) 2017.9164 0.91635331 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 1 1 By MS/MS By MS/MS 4.6 0.917 1 4 3 2 6 4 44.558 44.693 3;4 2.7899E-31 12086 20211116_3442_TMUAki_TMT10x_S_F4 190.23 145.66 84553000 145050000 578940 185800000 123580000 110060000 84735000 46587000 47569000 48815000 102160000 78726000 135500000 7411100 185540000 117510000 115370000 86831000 50637000 51956000 47584000 96860000 18 18 9 18 18 18 18 18 18 18 18 40853000 69959000 273290 89016000 101380000 92605000 67959000 26868000 26269000 26965000 50187000 38038000 65350000 4184500 89518000 96364000 92642000 69390000 30638000 29397000 26332000 47673000 12 12 6 12 12 12 12 12 12 12 12 43700000 75090000 305650 96789000 22201000 17454000 16776000 19719000 21300000 21850000 51973000 40688000 70148000 3226600 96022000 21145000 22725000 17440000 19999000 22559000 21252000 49187000 6 6 3 6 6 6 6 6 6 6 6 9206400000 6248600000 2957900000 3202 2334 2992 18569;18570;18571;18572;18573;18574;18575;18576;18577;18578 22348;22349;22350;22351;22352;22353;22354;22355;22356;22357;22358;22359;22360;22361;22362;22363;22364;22365 22360 2678 18 DNTRPGANSPEMWSEAIK Unmodified 2001.9214 0.92143869 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.957 1 2 2 1 2 4 49.71 49.873 3 7.5175E-58 14721 20211116_3442_TMUAki_TMT10x_S_F4 245.03 211.41 55474000 90618000 339730 119770000 64729000 46504000 56189000 20021000 17697000 20405000 56538000 51654000 84666000 4963700 119030000 61866000 51299000 56250000 21704000 21066000 19913000 53338000 8 8 6 8 8 8 8 8 8 8 8 26126000 41090000 193070 54123000 48375000 34775000 40926000 9583800 8046900 9119900 25346000 24326000 38390000 2575900 54005000 46203000 36054000 40884000 11002000 10239000 8926100 23915000 4 4 2 4 4 4 4 4 4 4 4 29348000 49528000 146660 65647000 16354000 11728000 15263000 10438000 9650200 11285000 31192000 27327000 46276000 2387800 65026000 15662000 15245000 15365000 10703000 10827000 10987000 29423000 4 4 4 4 4 4 4 4 4 4 4 9728500000 5526600000 4201900000 3203 2334 2992 18579;18580;18581;18582;18583;18584 22366;22367;22368;22369;22370;22371;22372;22373;22374 22371 9 DNTYLVELSSLLVR Unmodified 1620.8723 0.87228688 2505 Q96JB5;Q96JB5-4 CDK5RAP3 CDK5 regulatory subunit-associated protein 3 yes no 0 0 0 0 By MS/MS 7 0 2 2 80.867 80.901 2;3 5.0146E-06 28640 20211116_3446_TMUAki_TMT10x_S_F7 110.38 83.125 1031900 1694600 0 1600200 1194000 1168800 1411200 988060 1258600 1471200 1520700 960630 1580900 62719 1632700 1148700 1213300 1415400 1028200 1296400 1416900 1458900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1031900 1694600 0 1600200 1194000 1168800 1411200 988060 1258600 1471200 1520700 960630 1580900 62719 1632700 1148700 1213300 1415400 1028200 1296400 1416900 1458900 1 1 0 1 1 1 1 1 1 1 1 126400000 0 126400000 3204 2505 2993 18585;18586 22375;22376 22375 2 DNVSSPGGATIHALHVLESGGFR Unmodified 2320.156 0.15600673 902 P32322;P32322-2;P32322-3 PYCR1 Pyrroline-5-carboxylate reductase 1, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 7.11 0.737 2 4 3 2 7 47.381 47.672 3;4 1.3418E-20 20187 20211116_3446_TMUAki_TMT10x_S_F7 142.21 119.31 8109200 13405000 124330 12176000 9260900 15074000 9303900 10512000 9333600 8884300 10281000 7551400 12504000 803210 12552000 8888400 15075000 9436100 10869000 9527700 8743900 9888300 6 6 5 6 6 6 6 6 6 6 6 5893300 9547800 99307 8526400 6500800 12426000 6748700 7634200 6764800 6220800 7214700 5488000 8905300 589650 8828800 6245500 12311000 6833000 7961500 6897300 6133800 6945800 2 2 2 2 2 2 2 2 2 2 2 2215900 3857000 25027 3649500 2760100 2647800 2555300 2877300 2568800 2663500 3066200 2063400 3598200 213550 3722800 2642900 2764400 2603000 2907500 2630400 2610100 2942500 4 4 3 4 4 4 4 4 4 4 4 2923900000 980620000 1943300000 3205 902 2994 18587;18588;18589;18590;18591;18592;18593;18594;18595 22377;22378;22379;22380;22381;22382;22383;22384;22385;22386 22380 10 DNYVPEVSALDQEIIEVDPDTK Unmodified 2488.1857 0.18569468 562 P08708 RPS17 40S ribosomal protein S17 yes yes 0 0 0 0 By MS/MS By MS/MS 1.79 0.683 18 29 5 1 32 21 49.566 49.486 2;3;4 2.6594E-55 27733 20211116_3439_TMUAki_TMT10x_S_F1 226.67 198.81 117370000 199030000 2352600 193780000 131730000 153280000 137750000 76246000 84099000 93499000 132870000 109290000 185690000 11259000 197450000 126570000 156920000 137750000 81926000 89635000 90605000 126670000 69 69 32 69 69 69 69 69 69 69 69 53767000 86038000 1226100 84563000 47274000 84075000 57903000 34747000 38126000 41074000 57146000 50069000 80277000 5188400 86365000 45650000 84571000 57565000 38007000 40327000 39855000 54538000 41 41 16 41 41 41 41 41 41 41 41 63599000 112990000 1126500 109210000 84452000 69203000 79850000 41499000 45973000 52425000 75725000 59224000 105420000 6070700 111080000 80922000 72345000 80187000 43918000 49308000 50750000 72128000 28 28 16 28 28 28 28 28 28 28 28 38076000000 16656000000 21420000000 3206 562 2995 18596;18597;18598;18599;18600;18601;18602;18603;18604;18605;18606;18607;18608;18609;18610;18611;18612;18613;18614;18615;18616;18617;18618;18619;18620;18621;18622;18623;18624;18625;18626;18627;18628;18629;18630;18631;18632;18633;18634;18635;18636;18637;18638;18639;18640;18641;18642;18643;18644;18645;18646;18647;18648 22387;22388;22389;22390;22391;22392;22393;22394;22395;22396;22397;22398;22399;22400;22401;22402;22403;22404;22405;22406;22407;22408;22409;22410;22411;22412;22413;22414;22415;22416;22417;22418;22419;22420;22421;22422;22423;22424;22425;22426;22427;22428;22429;22430;22431;22432;22433;22434;22435;22436;22437;22438;22439;22440;22441;22442;22443;22444;22445;22446;22447;22448;22449;22450;22451;22452;22453;22454;22455;22456;22457;22458;22459;22460 22432 74 DPAQPMSPGEATQSGARPADR Oxidation (M) 2153.976 0.97599345 2629 Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 0 0 1 1 By MS/MS 2 0 1 1 28.612 28.379 3 6.2788E-14 6918 20211116_3429_TMUAki_TMT10x_P_F2 131.98 113.74 45378 70845 2527.5 87163 158310 124770 58655 41743 53948 51510 62513 42270 66167 7699.4 88330 149450 122930 64561 46924 55393 49905 60039 1 1 1 1 1 1 1 1 1 1 1 45378 70845 2527.5 87163 158310 124770 58655 41743 53948 51510 62513 42270 66167 7699.4 88330 149450 122930 64561 46924 55393 49905 60039 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8891300 8891300 0 3207 2629 2996 18649 22461 22461 2872 1 DPENFPFVVLGNK Unmodified 1474.7456 0.7456298 1151 P51149 RAB7A Ras-related protein Rab-7a yes yes 0 0 0 0 By MS/MS By MS/MS 6.56 0.831 1 3 4 1 5 4 71.503 71.535 2;3 5.3437E-12 27282 20211116_3446_TMUAki_TMT10x_S_F7 152.47 124.45 50723000 84480000 242030 74380000 53703000 66936000 64778000 35381000 35461000 43250000 55264000 47225000 78791000 3906600 76482000 51749000 67940000 64220000 37801000 38061000 41916000 52698000 7 7 1 7 7 7 7 7 7 7 7 19467000 32455000 0 27637000 19263000 31794000 23404000 11285000 12083000 15114000 18998000 18125000 30266000 1479000 28597000 18565000 31672000 23173000 12624000 13033000 14604000 18113000 3 3 0 3 3 3 3 3 3 3 3 31256000 52025000 242030 46743000 34440000 35142000 41374000 24096000 23378000 28136000 36265000 29100000 48525000 2427700 47885000 33184000 36267000 41048000 25177000 25028000 27313000 34585000 4 4 1 4 4 4 4 4 4 4 4 7574500000 2015000000 5559500000 3208 1151 2997 18650;18651;18652;18653;18654;18655;18656;18657;18658 22462;22463;22464;22465;22466;22467;22468;22469 22469 8 DPENFPFVVLGNKIDLENR Unmodified 2215.1273 0.12733236 1151 P51149 RAB7A Ras-related protein Rab-7a yes yes 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 78.22 78.24 3 0.015415 25031 20211116_3434_TMUAki_TMT10x_P_F6 43.799 34.05 5718200 9591500 212210 8724900 7253800 8638800 7547100 5756700 5395600 6310200 7534600 5325700 8946700 684550 8960800 6974900 8741200 7573400 6015100 5659200 6140100 7202200 2 2 1 2 2 2 2 2 2 2 2 2367200 4049100 0 3728900 2138500 4662800 2763000 2403400 2330700 2684100 3080900 2204000 3777100 184250 3840700 2065600 4641800 2756600 2566000 2416600 2609800 2948800 1 1 0 1 1 1 1 1 1 1 1 3351000 5542400 212210 4996000 5115300 3976000 4784100 3353400 3065000 3626200 4453700 3121700 5169600 500300 5120100 4909300 4099400 4816900 3449000 3242600 3530300 4253400 1 1 1 1 1 1 1 1 1 1 1 1600500000 825030000 775480000 3209 1151 2998 18659;18660 22470 22470 1 DPFAHLPK Unmodified 923.4865 0.48650199 821 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 45.536 45.856 3 0.0077826 11717 20211116_3434_TMUAki_TMT10x_P_F6 71.379 32.231 12121000 17082000 29918 23660000 13816000 11813000 10456000 10273000 11767000 10317000 14083000 11286000 15963000 1026000 23495000 13162000 12730000 10822000 10524000 11996000 10075000 13513000 5 5 2 5 5 5 5 5 5 5 5 3869100 5105200 0 6985600 7878800 6443200 3842400 3357600 3721900 3314500 4419100 3602300 4770800 350570 6985500 7451300 6528000 4104900 3568200 3816400 3238900 4241400 2 2 0 2 2 2 2 2 2 2 2 8251800 11976000 29918 16674000 5936800 5369400 6613100 6915100 8045400 7003000 9663400 7683400 11193000 675390 16510000 5711000 6202000 6716900 6955400 8179500 6835900 9271800 3 3 2 3 3 3 3 3 3 3 3 1619400000 1032000000 587400000 3210 821 2999 18661;18662;18663;18664;18665 22471;22472;22473;22474;22475;22476 22472 6 DPGMGAMGGMGGGMGGGMF 5 Oxidation (M) 1753.5874 0.58743265 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 5 0 By MS/MS By MS/MS 2.75 0.433 1 3 2 2 38.52 38.493 3 0.0092493 9515 20211116_3440_TMUAki_TMT10x_S_F2 44.998 43.851 764080 1080000 17958 1409400 924420 786500 702690 860310 905190 741440 1044500 711560 1009000 80796 1405200 881790 841310 730630 867420 916960 729030 1003300 4 4 3 4 4 4 4 4 4 4 4 205090 289980 14820 399920 479670 379040 275990 186490 193280 167240 263230 191070 271000 34661 399910 455700 383100 288040 198760 202730 164130 251770 2 2 2 2 2 2 2 2 2 2 2 559000 790000 3137.7 1009500 444760 407450 426700 673810 711910 574200 781290 520490 737970 46135 1005300 426090 458210 442590 668660 714230 564900 751530 2 2 1 2 2 2 2 2 2 2 2 268780000 129740000 139040000 3211 613 3000 18666;18667;18668;18669 22477;22478;22479;22480 22479 598;599;600;601;602 4 DPHLACVAYER Unmodified 1329.6136 0.61356977 1471 Q00610;Q00610-2;P53675;P53675-2 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 1.12 1 1 1 1 2 2 35.465 35.399 3 2.1345E-11 11173 20211116_3441_TMUAki_TMT10x_S_F3 167.2 149.83 1657000 2657100 12091 2559100 3863100 3289500 2250200 2239500 2405800 2106600 2394300 1542700 2479000 151130 2628600 3662500 3282500 2371600 2326000 2440200 2062900 2310000 3 3 2 3 3 3 3 3 3 3 3 1404300 2240100 6080 2177400 3602200 3062300 1989300 1847300 2019200 1791100 1996200 1307300 2090000 124460 2239000 3411900 3037700 2103100 1937800 2052100 1751600 1926400 2 2 1 2 2 2 2 2 2 2 2 252780 417030 6010.6 381660 260920 227260 260860 392250 386530 315510 398080 235410 389000 26673 389550 250550 244750 268500 388190 388140 311310 383660 1 1 1 1 1 1 1 1 1 1 1 304890000 224000000 80883000 3212 1471 3001 18670;18671;18672;18673 22481;22482;22483 22483 3 DPIPYLPPLEK Unmodified 1280.7016 0.70163972 560 P08621;P08621-2;P08621-3 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 0 0 0 0 By MS/MS By MS/MS 5.88 0.781 3 3 2 3 5 73.425 73.429 2;3 2.8102E-05 23197 20211116_3444_TMUAki_TMT10x_S_F5 105.86 75.299 22917000 39061000 400700 36128000 25431000 34854000 29401000 28496000 31432000 32658000 31277000 21341000 36437000 2301600 37045000 24508000 35443000 29678000 29418000 31882000 31724000 30177000 8 8 7 8 8 8 8 8 8 8 8 6301300 10074000 99964 9245200 6868100 12746000 8009500 7714200 8115200 8422200 7884300 5867900 9396800 623530 9542500 6620200 12655000 8068000 8118400 8243000 8196400 7612800 2 2 2 2 2 2 2 2 2 2 2 16615000 28987000 300740 26883000 18563000 22109000 21391000 20781000 23316000 24236000 23393000 15473000 27041000 1678100 27502000 17888000 22787000 21610000 21299000 23639000 23527000 22564000 6 6 5 6 6 6 6 6 6 6 6 2984500000 834370000 2150100000 3213 560 3002 18674;18675;18676;18677;18678;18679;18680;18681 22484;22485;22486;22487;22488;22489;22490;22491;22492;22493 22489 10 DPLLLAIIPK Unmodified 1091.6954 0.69543213 2852 Q9HAV4 XPO5 Exportin-5 yes yes 0 0 0 0 By MS/MS 8 0 1 1 79.509 79.514 2 0.0053029 26198 20211116_3436_TMUAki_TMT10x_P_F8 69.812 46.982 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3214 2852 3003 18682 22494 22494 1 DPNIVIAK Unmodified 868.50182 0.5018177 868 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 By MS/MS 5 0 1 1 47.062 47.226 2 0.0020654 12405 20211116_3444_TMUAki_TMT10x_S_F5 121.96 84.581 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3215 868 3004 18683 22495 22495 1 DPPHNNFFFFDGMK Oxidation (M) 1727.7402 0.74022685 3076 Q9UBE0 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed yes yes 0 0 1 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 61.838 62.144 3 0.00089173 20698 20211116_3446_TMUAki_TMT10x_S_F7 72.321 64.346 21600000 35964000 354250 33845000 25712000 39876000 26587000 28948000 28632000 29466000 28972000 20114000 33550000 2178500 34767000 24697000 40006000 26986000 29999000 29051000 28757000 27938000 5 5 5 5 5 5 5 5 5 5 5 13666000 22159000 252290 20804000 17065000 29677000 17402000 18104000 17793000 18290000 17840000 12726000 20672000 1415700 21452000 16386000 29426000 17646000 18997000 18086000 17856000 17208000 3 3 3 3 3 3 3 3 3 3 3 7933700 13804000 101960 13042000 8647000 10199000 9185600 10843000 10838000 11176000 11132000 7387800 12878000 762770 13316000 8310900 10580000 9340300 11002000 10964000 10901000 10730000 2 2 2 2 2 2 2 2 2 2 2 3081300000 1699100000 1382200000 3216 3076 3005 18684;18685;18686;18687 22496;22497;22498;22499;22500 22500 3124 5 DPPHNNFFFFDGMK Unmodified 1711.7453 0.74531222 3076 Q9UBE0 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 68.446 68.934 3 0.021365 23596 20211116_3446_TMUAki_TMT10x_S_F7 48.405 38.875 5984800 9437200 117210 8801500 6769800 11036000 7711700 6254500 5453000 6065500 7209100 5573300 8803500 616410 9057300 6522000 10998000 7703100 6594800 5708700 5931700 6900000 1 1 1 1 1 1 1 1 1 1 1 5984800 9437200 117210 8801500 6769800 11036000 7711700 6254500 5453000 6065500 7209100 5573300 8803500 616410 9057300 6522000 10998000 7703100 6594800 5708700 5931700 6900000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 563300000 563300000 0 3217 3076 3005 18688;18689 22501;22502 22502 2 DPPSWSVLAGHSR Unmodified 1407.6895 0.6895119 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS 7 0 1 1 44.487 45.011 3 0.033619 13799 20211116_3446_TMUAki_TMT10x_S_F7 47.33 34.13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3218 3293 3006 18690 22503 22503 1 DPQGFINDWLQSQCR Unmodified 1862.837 0.83698078 2475 Q96GM5 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes yes 0 0 0 0 By matching By MS/MS 8 0 2 1 1 78.493 78.481 3 0.079516 25198 20211116_3447_TMUAki_TMT10x_S_F8 30.083 18.984 3541100 5373600 177830 5561700 4009000 3602500 4202100 4087500 3137700 4189300 4725200 3298500 5014900 465870 5631300 3859600 3801700 4219300 4134500 3295000 4087300 4509100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3541100 5373600 177830 5561700 4009000 3602500 4202100 4087500 3137700 4189300 4725200 3298500 5014900 465870 5631300 3859600 3801700 4219300 4134500 3295000 4087300 4509100 1 1 1 1 1 1 1 1 1 1 1 877360000 309790000 567580000 3219 2475 3007 18691;18692 22504 22504 1 DPSGRPLRLPPVLSHPIFDNR Unmodified 2382.292 0.2920467 1509 Q04206;Q04206-3;Q04206-4;Q04206-2 RELA Transcription factor p65 yes no 0 0 0 2 By matching By MS/MS 3 0 2 1 1 53.914 53.637 5 1.5707E-07 18622 20211116_3441_TMUAki_TMT10x_S_F3 96.492 88.403 553200 946980 0 1085400 575370 426000 469950 616730 657410 630160 767320 515000 884150 35433 1087600 548350 478930 488000 617830 664500 614900 736800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 553200 946980 0 1085400 575370 426000 469950 616730 657410 630160 767320 515000 884150 35433 1087600 548350 478930 488000 617830 664500 614900 736800 1 1 0 1 1 1 1 1 1 1 1 248730000 158150000 90587000 3220 1509 3008 18693;18694 22505 22505 1 DPSQELEFIADILNQDAK Unmodified 2044.9953 0.99531514 1093 P49354;P49354-2 FNTA Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha yes no 0 0 0 0 By MS/MS By MS/MS 2.38 0.992 2 2 3 1 3 5 83.089 83.072 3 2.4963E-12 27710 20211116_3440_TMUAki_TMT10x_S_F2 133.16 118.24 6358500 10047000 84710 9728700 6582300 7692800 7655300 5645600 5963400 6753400 8091300 5921000 9373500 609240 9916900 6343500 7916500 7656600 5876600 6216300 6550100 7739500 5 5 5 5 5 5 5 5 5 5 5 1214500 1928900 19120 1994600 1153400 2188700 1571200 1075600 1178900 1561400 1614500 1131000 1800100 117650 2033100 1117600 2192700 1559800 1164400 1231900 1505000 1544000 1 1 1 1 1 1 1 1 1 1 1 5144000 8117800 65590 7734000 5428800 5504100 6084100 4570000 4784600 5192000 6476800 4790000 7573400 491590 7883800 5225900 5723800 6096900 4712200 4984400 5045100 6195600 4 4 4 4 4 4 4 4 4 4 4 1339700000 578440000 761210000 3221 1093 3009 18695;18696;18697;18698;18699;18700;18701;18702 22506;22507;22508;22509;22510;22511;22512 22509 7 DPVQDHRPLAQPLPNPSAPLRR Unmodified 2473.3302 0.33022312 2688 Q9BVA0 KATNB1 Katanin p80 WD40 repeat-containing subunit B1 yes yes 0 0 0 2 By MS/MS By matching 1 0 2 1 1 37.621 37.578 5 0.0058641 9040 20211116_3428_TMUAki_TMT10x_P_F1 53.96 41.814 260450 490060 0 553990 683220 614810 338430 402960 370460 317000 417060 242480 457520 24529 561550 646240 617820 362300 417820 377130 313140 400880 1 1 0 1 1 1 1 1 1 1 1 260450 490060 0 553990 683220 614810 338430 402960 370460 317000 417060 242480 457520 24529 561550 646240 617820 362300 417820 377130 313140 400880 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 99227000 77752000 21475000 3222 2688 3010 18703;18704 22513 22513 1 DPVQEAWAEDVDLR Unmodified 1641.7635 0.76346471 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 4 4 4 4 67.147 67.021 2;3 3.136E-43 20919 20211116_3428_TMUAki_TMT10x_P_F1 268.08 238.34 26645000 40073000 215430 54806000 24153000 21256000 26727000 12696000 11995000 15100000 26013000 24809000 37447000 2133800 54369000 23221000 23531000 26520000 13412000 13345000 14649000 24660000 7 7 4 7 7 7 7 7 7 7 7 9877900 13909000 150820 20260000 9322300 10662000 10464000 3492500 3322000 4428000 8902800 9198400 13002000 951720 20076000 8976500 11292000 10334000 3940800 3890200 4286100 8415500 2 2 2 2 2 2 2 2 2 2 2 16767000 26164000 64611 34546000 14831000 10594000 16263000 9203400 8672900 10672000 17110000 15610000 24445000 1182100 34293000 14245000 12239000 16186000 9471500 9454700 10363000 16244000 5 5 2 5 5 5 5 5 5 5 5 5872700000 3130600000 2742200000 3223 670;671 3011 18705;18706;18707;18708;18709;18710;18711;18712 22514;22515;22516;22517;22518;22519;22520;22521;22522;22523 22514 10 DPYCHPVCANR Unmodified 1387.5761 0.57613841 3325 Q9Y5Q8;Q9Y5Q8-2;Q9Y5Q8-3 GTF3C5 General transcription factor 3C polypeptide 5 yes no 0 0 0 0 By MS/MS 4 0 1 1 28.034 28.083 3 0.090938 5634 20211116_3431_TMUAki_TMT10x_P_F4 30.354 25.463 175730 285630 0 245330 200150 312370 182050 159590 155790 153790 188330 163580 266380 9584.5 254130 191110 310650 184800 169800 160800 150440 180670 1 1 0 1 1 1 1 1 1 1 1 175730 285630 0 245330 200150 312370 182050 159590 155790 153790 188330 163580 266380 9584.5 254130 191110 310650 184800 169800 160800 150440 180670 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4952500 4952500 0 3224 3325 3012 18713 22524 22524 1 DQAEEEPNRIPSR Unmodified 1539.7277 0.7277479 1720 Q14676;Q14676-2;Q14676-3;Q14676-4 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 0 1 By MS/MS 1 0 1 1 27.999 27.999 3 0.0014514 5238 20211116_3428_TMUAki_TMT10x_P_F1 73.887 52.934 28461 50277 0 50341 60189 58379 35886 30762 31503 36383 42486 26493 46914 2010.6 51472 57049 58356 37536 32838 32631 35302 40645 1 1 0 1 1 1 1 1 1 1 1 28461 50277 0 50341 60189 58379 35886 30762 31503 36383 42486 26493 46914 2010.6 51472 57049 58356 37536 32838 32631 35302 40645 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1361700 1361700 0 3225 1720 3013 18714 22525 22525 1 DQAVENILVSPVVVASSLGLVSLGGK Unmodified 2550.4269 0.42686843 1136 P50454 SERPINH1 Serpin H1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.2 0.4 4 1 2 3 83.411 83.403 3;4 1.8081E-23 27866 20211116_3440_TMUAki_TMT10x_S_F2 143.89 128.63 3705500 6293400 49600 5698200 4298100 5036200 5096800 2917100 3094100 3423000 4551200 3450400 5870200 346560 5845200 4143400 5123700 5066200 3088000 3287100 3322300 4345200 5 5 3 5 5 5 5 5 5 5 5 1529400 2589900 26301 2479600 1364600 2479700 1818100 1272600 1259600 1395600 1861900 1424200 2416200 147010 2537400 1321300 2499000 1803100 1358500 1327300 1357900 1777500 2 2 1 2 2 2 2 2 2 2 2 2176000 3703500 23300 3218600 2933500 2556500 3278800 1644400 1834500 2027500 2689300 2026200 3454000 199550 3307800 2822000 2624700 3263100 1729400 1959800 1964300 2567800 3 3 2 3 3 3 3 3 3 3 3 634660000 267780000 366880000 3226 1136 3014 18715;18716;18717;18718;18719 22526;22527;22528;22529;22530 22528 5 DQDELKPGPTNR Unmodified 1368.6634 0.66335673 1683 Q14151 SAFB2 Scaffold attachment factor B2 yes yes 0 0 0 1 By MS/MS 3 0 1 1 31.507 31.254 3 0.098355 9532 20211116_3441_TMUAki_TMT10x_S_F3 34.82 17.878 201150 366200 0 355590 186450 174240 233380 167910 195520 167870 272080 187280 341670 15005 360800 179860 188550 233100 171030 203280 163950 260090 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 201150 366200 0 355590 186450 174240 233380 167910 195520 167870 272080 187280 341670 15005 360800 179860 188550 233100 171030 203280 163950 260090 1 1 0 1 1 1 1 1 1 1 1 8372800 0 8372800 3227 1683 3015 18720 22531 22531 1 DQEEEMDYAPDDVYDYK Oxidation (M) 2139.8103 0.81027606 2207 Q8N7H5;Q8N7H5-3;Q8N7H5-2 PAF1 RNA polymerase II-associated factor 1 homolog yes no 0 0 1 0 By MS/MS 1 0 1 1 56.583 56.583 3 0.032531 16707 20211116_3428_TMUAki_TMT10x_P_F1 43.81 38.382 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3228 2207 3016 18721 22532 22532 2630 1 DQELYFFHELSPGSCFFLPK Unmodified 2460.146 0.1460189 819 P26639;P26639-2 TARS Threonine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.943 1 2 1 2 79.348 79.379 3 1.395E-06 27984 20211116_3446_TMUAki_TMT10x_S_F7 82.975 73.218 7592600 12822000 85312 12369000 8089000 11009000 9793900 5995200 5273700 6936100 8953800 7069500 11963000 634650 12630000 7798900 11186000 9705300 6376700 5693400 6735400 8523500 3 3 1 3 3 3 3 3 3 3 3 3217700 4966500 85312 4842000 2925800 5936700 3335100 2394900 2069600 2769900 3439700 2996600 4633800 342190 4964800 2820900 5900800 3322400 2624900 2209500 2689800 3275700 1 1 1 1 1 1 1 1 1 1 1 4374900 7855900 0 7526900 5163200 5071800 6458800 3600400 3204000 4166200 5514100 4072800 7329200 292470 7665200 4978000 5285200 6382900 3751800 3483900 4045600 5247800 2 2 0 2 2 2 2 2 2 2 2 2955200000 1126600000 1828600000 3229 819 3017 18722;18723;18724 22533;22534;22535 22535 3 DQEVLLQTGR Unmodified 1157.6041 0.60405094 1175 P52306;P52306-4;P52306-5;P52306-6;P52306-2;P52306-3 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 38.62 38.663 2 0.000488 11354 20211116_3430_TMUAki_TMT10x_P_F3 107.11 77.697 145550 193140 0 258150 406030 286820 178110 118680 162280 133650 182000 135510 180470 14981 259190 383550 286650 192090 129600 166480 129910 174960 1 1 0 1 1 1 1 1 1 1 1 145550 193140 0 258150 406030 286820 178110 118680 162280 133650 182000 135510 180470 14981 259190 383550 286650 192090 129600 166480 129910 174960 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4494900 4494900 0 3230 1175 3018 18725 22536 22536 1 DQFGFINYEVGDSKK Unmodified 1745.8261 0.82606496 346 O75534;O75534-2;O75534-3;O75534-4 CSDE1 Cold shock domain-containing protein E1 yes no 0 0 0 1 By MS/MS By MS/MS 6 0.894 2 1 2 2 3 60.825 60.863 3 5.9996E-07 18023 20211116_3444_TMUAki_TMT10x_S_F5 101.96 90.041 5514200 8291500 0 9826300 6368100 8515800 5453600 3565200 3470100 4208300 5611700 5133900 7742600 431090 9896500 6080500 8644900 5518300 3893900 3693000 4083500 5347100 1 1 0 1 1 1 1 1 1 1 1 5514200 8291500 0 9826300 6368100 8515800 5453600 3565200 3470100 4208300 5611700 5133900 7742600 431090 9896500 6080500 8644900 5518300 3893900 3693000 4083500 5347100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 656440000 656440000 0 3231 346 3019 18726;18727;18728;18729;18730 22537;22538;22539;22540;22541 22539 5 DQFNSHIQLVR Unmodified 1355.6946 0.69459728 2236 Q8ND24;Q8ND24-2 RNF214 RING finger protein 214 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 38.937 39.027 3 0.0011273 9032 20211116_3445_TMUAki_TMT10x_S_F6 77.644 65.147 3065200 5091600 369000 3881400 5111700 7268700 4869600 4880200 4857400 4114000 4654100 2856700 4746500 626680 4095800 4917600 7142300 4951700 5059400 4934900 4049500 4495900 3 3 3 3 3 3 3 3 3 3 3 2591200 4296800 333120 3144600 4590300 6724100 4247300 4246000 4184700 3551600 3995900 2415100 4005000 553290 3342900 4413000 6573600 4324200 4421400 4253200 3497300 3860500 1 1 1 1 1 1 1 1 1 1 1 474000 794790 35873 736890 521350 544570 622330 634110 672710 562370 658200 441610 741410 73394 752960 504600 568640 627540 638060 681640 552200 635390 2 2 2 2 2 2 2 2 2 2 2 74904000 53674000 21230000 3232 2236 3020 18731;18732 22542;22543;22544 22543 3 DQGGELLSLR Unmodified 1086.5669 0.56693715 637;1106 P49590;P49590-2;P12081;P12081-4;P12081-3;P12081-2 HARS2;HARS Probable histidine--tRNA ligase, mitochondrial;Histidine--tRNA ligase, cytoplasmic no no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 48.182 48.133 2 4.2986E-05 15263 20211116_3430_TMUAki_TMT10x_P_F3 133.89 85.61 1955600 3061400 0 4136800 5564000 5448200 2986500 3124700 3316300 2560800 3134700 1820700 2860600 196190 4163900 5269100 5417100 3174300 3277400 3352900 2524200 3029600 1 1 0 1 1 1 1 1 1 1 1 1955600 3061400 0 4136800 5564000 5448200 2986500 3124700 3316300 2560800 3134700 1820700 2860600 196190 4163900 5269100 5417100 3174300 3277400 3352900 2524200 3029600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 181140000 181140000 0 3233 1106;637 3021 18733;18734;18735 22545;22546;22547 22545 3 DQGGFGDRNEYGSR Unmodified 1556.6604 0.66039662 2380 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 29.704 29.54 3 4.3194E-09 7349 20211116_3429_TMUAki_TMT10x_P_F2 123.24 107.02 341530 564800 4101.8 608150 936930 690050 448370 436080 528910 371030 543730 318020 527180 39054 618580 886240 692220 482840 454250 535080 365050 524060 3 3 2 3 3 3 3 3 3 3 3 266710 436590 2184.5 442580 845290 627800 352800 339420 409290 288110 407660 248340 407410 30829 453860 798160 621650 385360 358120 413860 283490 393310 2 2 1 2 2 2 2 2 2 2 2 74823 128200 1917.3 165570 91639 62256 95563 96657 119620 82928 136070 69682 119770 8225.7 164720 88082 70568 97473 96127 121220 81558 130750 1 1 1 1 1 1 1 1 1 1 1 27896000 17353000 10543000 3234 2380 3022 18736;18737;18738 22548;22549 22548 2 DQGSFTEVVSISNLGMAK Oxidation (M) 1897.9091 0.90914267 630 P11717 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 0 0 1 0 By MS/MS 6 0 1 1 69.654 69.57 3 0.0077516 21903 20211116_3445_TMUAki_TMT10x_S_F6 50.957 36.7 3165200 5791800 116470 5275200 5130400 4487600 4306500 4425600 4485700 4826200 4981900 2948000 5402500 398480 5406300 4905600 4618900 4416900 4514800 4573200 4697000 4790500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3165200 5791800 116470 5275200 5130400 4487600 4306500 4425600 4485700 4826200 4981900 2948000 5402500 398480 5406300 4905600 4618900 4416900 4514800 4573200 4697000 4790500 1 1 1 1 1 1 1 1 1 1 1 411440000 0 411440000 3235 630 3023 18739 22550 22550 657 1 DQGTYEDYVEGLR Unmodified 1543.6791 0.67906638 1275 P60660;P60660-2 MYL6 Myosin light polypeptide 6 yes no 0 0 0 0 By MS/MS By MS/MS 2 0.756 2 3 2 3 4 55.791 55.568 2;3 6.4927E-36 18350 20211116_3439_TMUAki_TMT10x_S_F1 266.93 227.62 19571000 31454000 1078.2 45225000 20783000 23209000 16197000 13768000 17169000 14988000 20928000 18221000 29401000 1386500 44835000 19796000 24789000 16700000 14512000 17557000 14588000 20072000 7 7 1 7 7 7 7 7 7 7 7 12063000 18965000 0 27394000 16544000 19518000 11951000 8330800 10541000 8823700 12681000 11230000 17728000 870330 27233000 15735000 20118000 12319000 9049500 10861000 8597400 12167000 4 4 0 4 4 4 4 4 4 4 4 7508400 12489000 1078.2 17831000 4238800 3690800 4246500 5437600 6627900 6164600 8246700 6990600 11673000 516180 17602000 4060600 4671400 4380700 5462200 6695900 5990700 7905100 3 3 1 3 3 3 3 3 3 3 3 1940500000 1239700000 700870000 3236 1275 3024 18740;18741;18742;18743;18744;18745;18746 22551;22552;22553;22554;22555;22556;22557;22558 22555 8 DQIPSPGLMVFPKPVTALEYTFSR Unmodified 2692.3935 0.39345981 1225 P54709;P54709-2 ATP1B3 Sodium/potassium-transporting ATPase subunit beta-3 yes no 0 0 0 1 By MS/MS 3 0 1 1 79.456 79.405 3 9.3249E-12 28989 20211116_3441_TMUAki_TMT10x_S_F3 117.36 109.08 2048800 3286000 0 3057900 2649000 2021700 2884000 900640 777470 1233700 2146800 1907400 3065300 153910 3120100 2544300 2098300 2847900 982250 931710 1191100 2028500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2048800 3286000 0 3057900 2649000 2021700 2884000 900640 777470 1233700 2146800 1907400 3065300 153910 3120100 2544300 2098300 2847900 982250 931710 1191100 2028500 1 1 0 1 1 1 1 1 1 1 1 692700000 0 692700000 3237 1225 3025 18747 22559 22559 1 DQITAGNAAR Unmodified 1015.5047 0.50467125 767 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 28.581 28.326 2 1.3204E-08 8480 20211116_3441_TMUAki_TMT10x_S_F3 128.81 76.095 95347 149400 0 137520 148960 202630 119240 90409 111450 92411 125280 88768 139360 7557.5 142100 142010 199890 122260 97645 114210 90171 120420 1 1 0 1 1 1 1 1 1 1 1 95347 149400 0 137520 148960 202630 119240 90409 111450 92411 125280 88768 139360 7557.5 142100 142010 199890 122260 97645 114210 90171 120420 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9686200 2560600 7125600 3238 767 3026 18748;18749;18750 22560;22561 22561 2 DQIYDIFQK Unmodified 1168.5764 0.57643921 1277 P60842;P60842-2 EIF4A1 Eukaryotic initiation factor 4A-I yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 69.742 69.658 2 0.00016038 21555 20211116_3434_TMUAki_TMT10x_P_F6 100.58 59.555 7465100 11406000 0 17182000 6386900 6092400 6774500 5527700 6651700 6178100 8512900 6950000 10664000 516710 16955000 6128100 6877900 6847600 5668200 6838400 6007000 8154400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7465100 11406000 0 17182000 6386900 6092400 6774500 5527700 6651700 6178100 8512900 6950000 10664000 516710 16955000 6128100 6877900 6847600 5668200 6838400 6007000 8154400 1 1 0 1 1 1 1 1 1 1 1 464870000 0 464870000 3239 1277 3027 18751;18752 22562;22563 22562 2 DQLIYNLLK Unmodified 1118.6336 0.63356015 462 P00338;P00338-3;P00338-4;P00338-2;P00338-5 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 0 By MS/MS By MS/MS 6.56 2.11 1 2 2 4 4 5 76.665 76.673 2 6.3491E-06 25003 20211116_3436_TMUAki_TMT10x_P_F8 173.37 72.618 209250000 314580000 986840 424210000 163880000 169740000 179770000 82746000 88786000 103900000 183500000 194830000 293940000 16839000 421210000 157540000 186660000 178700000 89155000 97667000 100610000 174080000 11 11 7 11 11 11 11 11 11 11 11 89127000 131570000 882100 174240000 80796000 101980000 77525000 37520000 41090000 47717000 78463000 82993000 122920000 8079700 173650000 77441000 106900000 77680000 41706000 44723000 46183000 74533000 6 6 5 6 6 6 6 6 6 6 6 120120000 183010000 104740 249970000 83084000 67761000 102250000 45227000 47696000 56186000 105040000 111840000 171020000 8759600 247560000 80102000 79763000 101020000 47449000 52944000 54422000 99551000 5 5 2 5 5 5 5 5 5 5 5 22189000000 13100000000 9089200000 3240 462 3028 18753;18754;18755;18756;18757;18758;18759;18760;18761 22564;22565;22566;22567;22568;22569;22570;22571;22572;22573;22574;22575;22576 22569 13 DQLIYNLLKEEQTPQNK Unmodified 2073.0742 0.074234161 462 P00338;P00338-3;P00338-4;P00338-2;P00338-5 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 1 By MS/MS By MS/MS 6.11 1.52 1 2 4 4 3 5 9 10 67.964 68.021 3;4 9.5702E-36 22167 20211116_3445_TMUAki_TMT10x_S_F6 202.96 185.05 282290000 505270000 3201100 361350000 359810000 417750000 336490000 266190000 251970000 281890000 332380000 262860000 470930000 25996000 379650000 344520000 418690000 339910000 278760000 262890000 274660000 318150000 29 29 19 29 29 29 29 29 29 29 29 127400000 216120000 1109100 160850000 160270000 266700000 170360000 118480000 115600000 126880000 145970000 118620000 201450000 11160000 169580000 153930000 261830000 170580000 128200000 121080000 123570000 139870000 16 16 9 16 16 16 16 16 16 16 16 154900000 289160000 2092000 200500000 199550000 151050000 166130000 147710000 136370000 155010000 186410000 144230000 269480000 14836000 210070000 190590000 156860000 169340000 150560000 141810000 151090000 178270000 13 13 10 13 13 13 13 13 13 13 13 36919000000 18145000000 18775000000 3241 462 3029 18762;18763;18764;18765;18766;18767;18768;18769;18770;18771;18772;18773;18774;18775;18776;18777;18778;18779;18780 22577;22578;22579;22580;22581;22582;22583;22584;22585;22586;22587;22588;22589;22590;22591;22592;22593;22594;22595;22596;22597;22598;22599;22600;22601;22602;22603;22604;22605;22606;22607 22599 31 DQLLLGPTYATPK Unmodified 1415.766 0.76603089 1237 P55084;P55084-2 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 0 0 0 0 By MS/MS 6 0 1 1 61.375 61.406 3 0.0016554 18129 20211116_3434_TMUAki_TMT10x_P_F6 67.115 47.792 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3242 1237 3030 18781 22608 22608 1 DQLQEQLQALK Unmodified 1312.6987 0.69867961 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 3 1 61.148 61.218 2;3 3.6223E-14 19232 20211116_3433_TMUAki_TMT10x_P_F5 155.26 92.44 5234000 9192600 39406 9664600 7289200 8449400 5743600 6570100 6513100 6352900 7112400 4873500 8579400 480280 9808000 6951500 8640400 5930600 6768400 6613600 6213500 6842500 2 2 1 2 2 2 2 2 2 2 2 2787600 4703900 0 4910700 4710600 6337600 3613700 3376900 3415500 3443400 3667400 2595400 4390000 238880 5016400 4487900 6301800 3716700 3584900 3492300 3360300 3530000 1 1 0 1 1 1 1 1 1 1 1 2446400 4488700 39406 4753900 2578600 2111800 2129900 3193200 3097600 2909500 3445000 2278100 4189400 241400 4791500 2463600 2338700 2213900 3183500 3121300 2853200 3312500 1 1 1 1 1 1 1 1 1 1 1 809280000 519650000 289630000 3243 1741 3031 18782;18783;18784;18785 22609;22610;22611 22609 3 DQLQTFSEEHPVLLTEAPLNPR Unmodified 2533.2813 0.28126682 1298 P61163 ACTR1A Alpha-centractin yes yes 0 0 0 0 By MS/MS By MS/MS 4.25 1.2 1 1 2 3 1 4 4 65.875 65.749 3 8.1016E-45 21335 20211116_3442_TMUAki_TMT10x_S_F4 207.67 186.07 18875000 29335000 121910 29020000 17225000 30911000 19415000 16921000 18291000 18061000 20861000 17574000 27371000 1455300 29656000 16565000 31059000 19544000 17944000 18748000 17593000 20044000 9 9 3 9 9 9 9 9 9 9 9 13133000 18744000 117160 19204000 10641000 24140000 12919000 10658000 11665000 11466000 13971000 12228000 17492000 1036500 19632000 10259000 23984000 12947000 11541000 12004000 11165000 13406000 6 6 2 6 6 6 6 6 6 6 6 5742000 10590000 4756.7 9816500 6583700 6771300 6495700 6262900 6625600 6595200 6890100 5345800 9878700 418770 10024000 6306100 7074600 6597500 6403300 6744100 6427500 6638400 3 3 1 3 3 3 3 3 3 3 3 5719100000 2895100000 2824000000 3244 1298 3032 18786;18787;18788;18789;18790;18791;18792;18793 22612;22613;22614;22615;22616;22617;22618;22619;22620;22621;22622;22623 22620 12 DQLSVLENGVDIVVGTPGR Unmodified 1967.0324 0.032369346 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 1.5 2 1 2 4 2 1 5 7 74.066 74.061 2;3 4.7304E-32 27625 20211116_3430_TMUAki_TMT10x_P_F3 194.92 158.28 26116000 42695000 266320 38662000 26746000 36221000 30856000 22901000 23914000 24922000 29826000 24316000 39824000 2143100 39690000 25746000 36751000 30868000 24017000 24842000 24257000 28589000 8 8 3 8 8 8 8 8 8 8 8 12535000 19530000 76780 16867000 10597000 20163000 12577000 9480300 10154000 11265000 13075000 11671000 18214000 911020 17445000 10204000 20098000 12579000 10232000 10540000 10929000 12522000 3 3 1 3 3 3 3 3 3 3 3 13580000 23164000 189540 21795000 16148000 16058000 18279000 13420000 13760000 13657000 16751000 12645000 21610000 1232100 22245000 15542000 16653000 18290000 13785000 14302000 13328000 16067000 5 5 2 5 5 5 5 5 5 5 5 9876100000 5013900000 4862200000 3245 2334 3033 18794;18795;18796;18797;18798;18799;18800;18801;18802;18803;18804;18805 22624;22625;22626;22627;22628;22629;22630;22631 22624 8 DQLSVLENGVDIVVGTPGRLDDLVSTGK Unmodified 2895.5189 0.51893091 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 1 By MS/MS By MS/MS 5.36 0.881 2 4 4 1 6 5 80.031 80.037 3;4 1.0306E-63 25733 20211116_3434_TMUAki_TMT10x_P_F6 218.98 193.83 56170000 89272000 505770 82460000 48963000 72603000 59133000 34174000 35231000 38280000 55991000 52300000 83275000 4614600 84457000 47208000 73707000 58709000 36808000 37624000 37218000 53370000 12 12 7 12 12 12 12 12 12 12 12 38258000 61044000 447760 55627000 29977000 54644000 37022000 23578000 25505000 27219000 39191000 35624000 56940000 3306700 57117000 28936000 55031000 36828000 25649000 26937000 26433000 37383000 8 8 5 8 8 8 8 8 8 8 8 17912000 28228000 58008 26833000 18987000 17958000 22111000 10596000 9725300 11062000 16800000 16676000 26335000 1307900 27340000 18271000 18677000 21881000 11159000 10687000 10784000 15987000 4 4 2 4 4 4 4 4 4 4 4 23630000000 14915000000 8715200000 3246 2334 3034 18806;18807;18808;18809;18810;18811;18812;18813;18814;18815;18816 22632;22633;22634;22635;22636;22637;22638;22639;22640;22641;22642;22643 22638 12 DQMQQQLNDYEQLLDVK Oxidation (M) 2122.9841 0.98409852 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 1 0 By MS/MS By MS/MS 2.67 1.11 1 2 1 2 3 3 72.881 72.782 3 1.5022E-11 24828 20211116_3429_TMUAki_TMT10x_P_F2 137.3 120.42 14276000 24741000 144260 22900000 15782000 26012000 19222000 18425000 19049000 19943000 19652000 13292000 23079000 1244800 23539000 15221000 26137000 19313000 19161000 19408000 19415000 18939000 7 7 5 7 7 7 7 7 7 7 7 7259600 12875000 95559 11705000 8064400 16758000 9629200 9587200 9602500 10084000 10218000 6760100 12010000 702200 12099000 7777700 16599000 9684600 10124000 9791900 9828100 9837500 3 3 3 3 3 3 3 3 3 3 3 7016000 11865000 48698 11195000 7717200 9253800 9593300 8837600 9446600 9859500 9434300 6532200 11069000 542570 11439000 7443600 9537600 9628300 9037100 9616300 9587200 9101300 4 4 2 4 4 4 4 4 4 4 4 2149900000 1333400000 816520000 3247 748 3035 18817;18818;18819;18820;18821;18822 22644;22645;22646;22647;22648;22649;22650;22651;22652 22644 858 9 DQNILLGTTYR Unmodified 1292.6725 0.67246486 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 50.805 50.963 2 6.1399E-12 13954 20211116_3444_TMUAki_TMT10x_S_F5 178.53 150.36 15944000 27165000 42320 30905000 24187000 27086000 17109000 27744000 28846000 24494000 25178000 14845000 25362000 1358000 31207000 23008000 27844000 18088000 28077000 28702000 24056000 24402000 6 6 1 6 6 6 6 6 6 6 6 7346800 12179000 0 13284000 17625000 19853000 11071000 12283000 12933000 10866000 11032000 6840000 11369000 684490 13572000 16730000 19650000 11630000 12828000 13008000 10671000 10701000 3 3 0 3 3 3 3 3 3 3 3 8597400 14986000 42320 17621000 6562100 7233000 6037800 15461000 15914000 13628000 14146000 8005000 13993000 673480 17635000 6278200 8194100 6457500 15250000 15694000 13385000 13701000 3 3 1 3 3 3 3 3 3 3 3 1470100000 873590000 596560000 3248 1433 3036 18823;18824;18825;18826;18827 22653;22654;22655;22656;22657;22658 22657 6 DQNYPGAIAIHHPNVAEK Unmodified 1972.9755 0.97552317 43 CON__P15636 yes yes 0 0 0 0 By MS/MS By MS/MS 5.29 0.7 1 3 3 6 1 33.485 33.525 3;4 7.3005E-24 9908 20211116_3433_TMUAki_TMT10x_P_F5 171.52 154.11 + 16184000 23292000 132330 30452000 58075000 45708000 21999000 22697000 28667000 21201000 23619000 15068000 21761000 1463600 30788000 54773000 45106000 24408000 24193000 28693000 20768000 22941000 9 9 3 9 9 9 9 9 9 9 9 14676000 20887000 114170 27229000 56951000 44780000 21243000 20341000 25755000 19111000 20805000 13664000 19514000 1327100 27592000 53703000 43987000 23555000 21878000 25828000 18716000 20223000 8 8 2 8 8 8 8 8 8 8 8 1507700 2405200 18163 3223200 1124400 927920 756050 2355500 2912100 2090100 2813900 1404000 2247300 136560 3196000 1070000 1119000 852910 2315000 2864700 2052300 2717500 1 1 1 1 1 1 1 1 1 1 1 8762400000 6711000000 2051400000 3249 43 3037 18828;18829;18830;18831;18832;18833;18834 22659;22660;22661;22662;22663;22664;22665;22666;22667;22668 22660 10 DQPAFTPSGILTPHALGSR Unmodified 1964.0116 0.011574324 2772 Q9H0D6;Q9H0D6-2 XRN2 5'-3' exoribonuclease 2 yes no 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 56.623 56.867 3 1.142E-16 16412 20211116_3447_TMUAki_TMT10x_S_F8 144.27 134.69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3250 2772 3038 18835;18836 22669;22670 22670 2 DQPPNSVEGLLNALR Unmodified 1621.8424 0.84238373 2958 Q9NUQ9;Q9NUQ9-2 FAM49B Protein FAM49B yes no 0 0 0 0 By MS/MS 6 0 1 1 77.25 77.22 2 5.7739E-14 24629 20211116_3434_TMUAki_TMT10x_P_F6 148.68 76.197 3095000 5193700 50847 4970600 2616000 4919200 3066000 3184900 2933700 3225200 3535600 2882100 4845500 297280 5085800 2522700 4975600 3082300 3326900 3011700 3148200 3392100 1 1 1 1 1 1 1 1 1 1 1 3095000 5193700 50847 4970600 2616000 4919200 3066000 3184900 2933700 3225200 3535600 2882100 4845500 297280 5085800 2522700 4975600 3082300 3326900 3011700 3148200 3392100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 531020000 531020000 0 3251 2958 3039 18837 22671 22671 1 DQQEAALVDMVNDGVEDLR Oxidation (M) 2131.9692 0.96917674 571 P09211 GSTP1 Glutathione S-transferase P yes yes 0 0 1 0 By MS/MS By MS/MS 1.29 0.452 5 2 3 4 68.09 67.931 2;3 4.159E-24 23305 20211116_3439_TMUAki_TMT10x_S_F1 171.25 149.45 51127000 82812000 304290 79428000 48385000 73446000 58887000 49331000 50265000 52418000 61620000 47603000 77260000 4107800 81180000 46652000 74649000 58916000 51466000 51916000 51067000 59091000 11 11 3 11 11 11 11 11 11 11 11 26878000 40444000 74931 38516000 24137000 47575000 29994000 25236000 25112000 25445000 30520000 25025000 37731000 2068200 39565000 23283000 47406000 29967000 26792000 25953000 24842000 29274000 5 5 1 5 5 5 5 5 5 5 5 24249000 42369000 229360 40912000 24247000 25871000 28893000 24095000 25153000 26974000 31101000 22578000 39529000 2039700 41615000 23368000 27244000 28949000 24674000 25963000 26225000 29818000 6 6 2 6 6 6 6 6 6 6 6 25751000000 15302000000 10449000000 3252 571 3040 18838;18839;18840;18841;18842;18843;18844 22672;22673;22674;22675;22676;22677;22678;22679;22680;22681;22682 22679 539 11 DQQEAALVDMVNDGVEDLR Unmodified 2115.9743 0.97426212 571 P09211 GSTP1 Glutathione S-transferase P yes yes 0 0 0 0 By MS/MS By MS/MS 1.71 0.672 17 19 5 27 14 52.427 52.352 2;3 1.1163E-170 25710 20211116_3428_TMUAki_TMT10x_P_F1 416.91 393.86 58367000 83671000 301330 102660000 49146000 49734000 63905000 21348000 19236000 25831000 54168000 54341000 78145000 3224000 102600000 47461000 53293000 62667000 23272000 22763000 25044000 51173000 34 34 10 35 35 35 33 34 34 34 34 27235000 38957000 79450 49194000 22401000 28075000 27881000 10107000 9020800 11800000 26437000 25357000 36390000 1660700 49147000 21604000 29500000 27410000 11234000 10620000 11455000 24964000 20 20 4 21 21 21 19 20 20 20 20 31132000 44714000 221880 53470000 26745000 21659000 36025000 11241000 10215000 14031000 27731000 28984000 41756000 1563300 53454000 25857000 23793000 35257000 12038000 12143000 13588000 26209000 14 14 6 14 14 14 14 14 14 14 14 22494000000 9897900000 12597000000 3253 571 3040 18845;18846;18847;18848;18849;18850;18851;18852;18853;18854;18855;18856;18857;18858;18859;18860;18861;18862;18863;18864;18865;18866;18867;18868;18869;18870;18871;18872;18873;18874;18875;18876;18877;18878;18879;18880;18881;18882;18883;18884;18885 22683;22684;22685;22686;22687;22688;22689;22690;22691;22692;22693;22694;22695;22696;22697;22698;22699;22700;22701;22702;22703;22704;22705;22706;22707;22708;22709;22710;22711;22712;22713;22714;22715;22716;22717;22718;22719;22720;22721;22722;22723;22724;22725;22726;22727;22728 22684 46 DQREEELGEYYMK Oxidation (M) 1704.7301 0.73011567 78 O00267;O00267-2 SUPT5H Transcription elongation factor SPT5 yes no 0 0 1 1 By MS/MS 2 0 1 1 41.952 41.671 3 0.01802 12210 20211116_3429_TMUAki_TMT10x_P_F2 58.595 21.011 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3254 78 3041 18886 22729 22729 46 1 DQSAVVVQGLPEGVAFK Unmodified 1742.9203 0.9202997 1428 P78347;P78347-2;P78347-4;P78347-3;P78347-5 GTF2I General transcription factor II-I yes no 0 0 0 0 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 68.356 68.425 3 0.00030369 22170 20211116_3433_TMUAki_TMT10x_P_F5 69.737 55.48 44782000 73485000 575890 74696000 48785000 56835000 47989000 45888000 45630000 49564000 54912000 41698000 68574000 4065100 75850000 46776000 58756000 48645000 47318000 46853000 48255000 52685000 7 7 5 7 7 7 7 7 7 7 7 12242000 19656000 233520 19448000 14810000 24283000 14651000 12224000 12170000 13685000 14000000 11400000 18340000 1268500 19927000 14211000 24168000 14793000 13081000 12554000 13306000 13449000 2 2 2 2 2 2 2 2 2 2 2 32540000 53829000 342370 55248000 33974000 32552000 33337000 33664000 33460000 35878000 40913000 30298000 50234000 2796600 55922000 32565000 34587000 33852000 34238000 34299000 34949000 39236000 5 5 3 5 5 5 5 5 5 5 5 2856200000 1443200000 1413000000 3255 1428 3042 18887;18888;18889;18890;18891 22730;22731;22732;22733;22734;22735;22736 22730 7 DQTAALLNSAGLGAADLFVLPANCGSSDGCEELER Unmodified 3620.6723 0.6722898 2333 Q8WZA9 IRGQ Immunity-related GTPase family Q protein yes yes 0 0 0 0 By MS/MS 3 0 1 1 80.574 80.537 3 0.0013565 29492 20211116_3441_TMUAki_TMT10x_S_F3 46.392 38.105 620860 866610 17267 1087400 659410 458550 803780 251430 146850 284220 558310 578210 809460 68106 1084400 636950 501280 787430 267080 192740 276240 525850 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 620860 866610 17267 1087400 659410 458550 803780 251430 146850 284220 558310 578210 809460 68106 1084400 636950 501280 787430 267080 192740 276240 525850 1 1 1 1 1 1 1 1 1 1 1 597010000 0 597010000 3256 2333 3043 18892 22737 22737 1 DQTKPTPLILDEQGR Unmodified 1709.8948 0.89481323 212 O43395;O43395-3 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 45.263 45.405 3 1.4596E-14 12544 20211116_3431_TMUAki_TMT10x_P_F4 136.63 122.38 1655900 2965700 0 4017500 5501300 5492500 3022800 3135100 3960000 2817900 2918600 1541600 2771200 167350 4046200 5211100 5451500 3224800 3297000 3950600 2765200 2847700 1 1 0 1 1 1 1 1 1 1 1 1655900 2965700 0 4017500 5501300 5492500 3022800 3135100 3960000 2817900 2918600 1541600 2771200 167350 4046200 5211100 5451500 3224800 3297000 3950600 2765200 2847700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 446740000 446740000 0 3257 212 3044 18893;18894 22738;22739 22738 2 DQTPDENDQVIVK Unmodified 1499.7104 0.71036651 3032 Q9NZI8;Q9NZI8-2 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.745 3 2 1 3 3 42.076 41.941 3 1.3862E-06 12346 20211116_3429_TMUAki_TMT10x_P_F2 114.87 99.896 2775500 4547900 51818 5138200 5268700 4281000 3284600 3332800 3795800 2862500 4124100 2584600 4245900 313320 5187300 5005100 4392800 3451300 3422400 3850900 2815000 3968200 3 3 3 3 3 3 3 3 3 3 3 1151600 1883900 25571 2141800 3653500 2833900 1626600 1430200 1601500 1208800 1712900 1072500 1758800 154350 2177100 3453700 2812700 1755100 1518300 1634300 1189700 1648900 1 1 1 1 1 1 1 1 1 1 1 1623800 2664000 26247 2996500 1615200 1447200 1658000 1902600 2194300 1653700 2411200 1512100 2487000 158970 3010200 1551400 1580100 1696200 1904000 2216600 1625300 2319300 2 2 2 2 2 2 2 2 2 2 2 365520000 248230000 117290000 3258 3032 3045 18895;18896;18897;18898;18899;18900 22740;22741;22742;22743;22744 22741 5 DQTPDENEEVIVR Unmodified 1542.7162 0.71618016 3353 Q9Y6M1;Q9Y6M1-5;Q9Y6M1-6;Q9Y6M1-3;Q9Y6M1-4;Q9Y6M1-1 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 37.675 37.632 2 3.7925E-44 9022 20211116_3428_TMUAki_TMT10x_P_F1 291.08 244.27 611230 940940 1802.3 1320600 1428100 937380 702430 843610 1183000 645000 1071800 569120 879420 63255 1314700 1351100 976470 765320 856510 1178500 638120 1037300 2 2 1 2 2 2 2 2 2 2 2 264190 406270 0 535930 1090300 642570 333670 340950 478710 254550 413910 245980 379580 32933 539170 1026300 641250 382510 359290 478360 252170 401290 1 1 0 1 1 1 1 1 1 1 1 347040 534670 1802.3 784720 337800 294810 368750 502660 704290 390440 657840 323140 499840 30322 775560 324780 335220 382810 497220 700170 385950 636030 1 1 1 1 1 1 1 1 1 1 1 87372000 60485000 26887000 3259 3353 3046 18901;18902 22745;22746 22745 2 DQVAIHEAMEQQTISITK Oxidation (M) 2057.0099 0.0099193444 1716 Q14566 MCM6 DNA replication licensing factor MCM6 yes yes 0 0 1 0 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 47.216 47.239 3 2.5569E-12 15857 20211116_3441_TMUAki_TMT10x_S_F3 132.9 120.61 10811000 20029000 133760 19811000 13727000 18979000 11861000 18916000 19136000 17791000 17573000 10067000 18688000 923530 20213000 13122000 19384000 12354000 19202000 19094000 17422000 17001000 8 8 5 8 8 8 8 8 8 8 8 3850900 6937800 53077 7036600 7415900 11555000 5676800 7106700 6967400 6333300 5949800 3585700 6474100 394950 7239100 7068600 11393000 5889100 7427000 6995600 6217300 5771100 2 2 1 2 2 2 2 2 2 2 2 6960600 13091000 80683 12774000 6311500 7423900 6184300 11809000 12168000 11458000 11624000 6481600 12214000 528580 12974000 6052900 7991600 6464900 11775000 12098000 11205000 11230000 6 6 4 6 6 6 6 6 6 6 6 1723600000 895770000 827830000 3260 1716 3047 18903;18904;18905;18906;18907 22747;22748;22749;22750;22751;22752;22753;22754 22749 2305 8 DQVAIHEAMEQQTISITK Unmodified 2041.015 0.015004722 1716 Q14566 MCM6 DNA replication licensing factor MCM6 yes yes 0 0 0 0 By MS/MS 6 0 1 1 54.718 54.807 3 6.8326E-07 15788 20211116_3445_TMUAki_TMT10x_S_F6 90.972 74.288 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3261 1716 3047 18908 22755 22755 1 DQVANSAFVER Unmodified 1234.5942 0.59421454 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 By MS/MS By MS/MS 3.23 1.76 2 3 4 1 1 1 1 7 6 36.497 36.514 2;3 6.547E-19 9165 20211116_3431_TMUAki_TMT10x_P_F4 231.07 186.94 10167000 16527000 60952 22686000 30262000 18199000 13388000 12686000 15455000 9940000 16792000 9465300 15444000 931190 22642000 28580000 18693000 14527000 13095000 15680000 9821100 16157000 10 10 4 10 10 10 10 10 10 10 10 5687300 8861500 2811 12809000 25080000 14034000 7573000 7361300 8801900 5512000 8993100 5293700 8283400 519080 12807000 23593000 14071000 8635100 7765800 8907500 5459500 8669400 6 6 2 6 6 6 6 6 6 6 6 4480100 7665500 58141 9877400 5182200 4165400 5815400 5325100 6652800 4428100 7798400 4171600 7161000 412110 9834900 4986900 4621800 5891700 5328900 6772100 4361700 7487400 4 4 2 4 4 4 4 4 4 4 4 2353400000 1303100000 1050400000 3262 544 3048 18909;18910;18911;18912;18913;18914;18915;18916;18917;18918;18919;18920;18921 22756;22757;22758;22759;22760;22761;22762;22763;22764;22765;22766;22767;22768;22769 22760 14 DQVDIAVQELLQLK Unmodified 1610.8879 0.88793694 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 0 By MS/MS By matching 4 0 2 1 1 81.137 81.134 3 0.00040926 27195 20211116_3431_TMUAki_TMT10x_P_F4 79.022 55.035 1435900 2315100 79984 2229500 1556000 2702700 1792400 1413400 1463500 1750800 1943500 1337600 2159900 195270 2287600 1502800 2695100 1795600 1512200 1520300 1696000 1860000 1 1 1 1 1 1 1 1 1 1 1 1435900 2315100 79984 2229500 1556000 2702700 1792400 1413400 1463500 1750800 1943500 1337600 2159900 195270 2287600 1502800 2695100 1795600 1512200 1520300 1696000 1860000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 628420000 377130000 251290000 3263 542 3049 18922;18923 22770 22770 1 DQVLQNLGSVESYSEEK Unmodified 1923.9062 0.90616578 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4;Q7Z4S6-6 KIF21A Kinesin-like protein KIF21A yes no 0 0 0 0 By MS/MS By MS/MS 3 0.707 1 2 1 3 1 65.248 65.032 3 6.0013E-22 20536 20211116_3431_TMUAki_TMT10x_P_F4 173.28 158.02 16453000 27915000 0 26302000 19317000 30005000 20308000 17491000 16917000 16906000 19809000 15317000 26041000 1197000 27002000 18533000 30058000 20442000 18398000 17461000 16535000 19019000 6 6 0 6 6 6 6 6 6 6 6 14691000 24293000 0 23213000 16999000 28216000 17917000 15411000 15160000 14790000 17273000 13678000 22664000 1105100 23832000 16313000 28149000 18041000 16297000 15618000 14471000 16597000 5 5 0 5 5 5 5 5 5 5 5 1761400 3621500 0 3089100 2318000 1788700 2390900 2079900 1757700 2115600 2535700 1639500 3377200 91901 3169500 2220400 1909000 2401800 2101000 1843400 2064700 2422000 1 1 0 1 1 1 1 1 1 1 1 2516700000 2001600000 515070000 3264 2082 3050 18924;18925;18926;18927 22771;22772;22773;22774;22775;22776;22777 22775 7 DQVTAQEIFQDNHEDGPTAK Unmodified 2242.0138 0.013818748 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 2.7 0.9 1 3 4 2 4 6 49.615 49.479 3;4 1.5864E-64 15789 20211116_3430_TMUAki_TMT10x_P_F3 268.65 236.46 40773000 64061000 282830 91733000 51601000 54194000 36462000 35469000 42010000 38367000 49118000 37963000 59879000 3457600 91067000 49092000 57104000 37948000 37095000 42747000 37352000 47162000 17 17 11 17 17 17 17 17 17 17 17 22398000 32898000 79689 49252000 41070000 44316000 27175000 17865000 21302000 20370000 25822000 20853000 30759000 1857200 49016000 39013000 44857000 28110000 19573000 22088000 19791000 24770000 7 7 2 7 7 7 7 7 7 7 7 18375000 31163000 203140 42481000 10531000 9878100 9286700 17605000 20708000 17997000 23295000 17110000 29121000 1600400 42051000 10079000 12248000 9838500 17521000 20659000 17561000 22392000 10 10 9 10 10 10 10 10 10 10 10 4430300000 2712300000 1718100000 3265 648 3051 18928;18929;18930;18931;18932;18933;18934;18935;18936;18937 22778;22779;22780;22781;22782;22783;22784;22785;22786;22787;22788;22789;22790;22791;22792;22793;22794 22779 17 DQVTAQEIFQDNHEDGPTAKK Unmodified 2370.1088 0.10878177 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 1 By MS/MS 5 0 1 1 45.663 45.805 4 2.1525E-05 12990 20211116_3433_TMUAki_TMT10x_P_F5 78.324 68.794 5589500 8200900 35613 10386000 12369000 12364000 6823500 6707700 6996100 6418900 7074700 5204000 7660500 516740 10471000 11717000 12346000 7216600 7096700 7112500 6280900 6822300 2 2 1 2 2 2 2 2 2 2 2 5589500 8200900 35613 10386000 12369000 12364000 6823500 6707700 6996100 6418900 7074700 5204000 7660500 516740 10471000 11717000 12346000 7216600 7096700 7112500 6280900 6822300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 309540000 309540000 0 3266 648 3052 18938 22795;22796 22796 2 DQWITEIVPTGTVTCIK Unmodified 1959.9976 0.99756374 3394 yes no 0 0 0 0 By MS/MS 4 0 1 1 79.101 79.114 3 0.10438 26341 20211116_3431_TMUAki_TMT10x_P_F4 21.534 2.938 + 3598700 5506100 133580 5090100 3128300 6408200 3757200 3326700 3656800 3788100 4500400 3351700 5136200 416260 5241800 3023400 6377700 3775100 3551700 3754500 3680700 4315200 1 1 1 1 1 1 1 1 1 1 1 3598700 5506100 133580 5090100 3128300 6408200 3757200 3326700 3656800 3788100 4500400 3351700 5136200 416260 5241800 3023400 6377700 3775100 3551700 3754500 3680700 4315200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 847200000 847200000 0 3267 3394 3053 18939 22797 22797 1 DQYSVIFESGDR Unmodified 1414.6365 0.63647328 1249 P55884;P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 0 0 0 0 By MS/MS 3 0 1 1 54.699 54.319 2 1.5415E-14 18902 20211116_3441_TMUAki_TMT10x_S_F3 146.16 121.24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3268 1249 3054 18940 22798 22798 1 DRCTLAEK Unmodified 991.47568 0.4756793 787 P23528 CFL1 Cofilin-1 yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 1.12 1 1 1 1 3 1 29.367 29.236 3 0.00056236 8754 20211116_3441_TMUAki_TMT10x_S_F3 128.91 64.865 3144300 5171700 179.82 4567700 3039900 3053700 2823400 1045200 1453300 1348500 2878900 2927600 4823500 244850 4679900 2908400 3159200 2832800 1173100 1589100 1304500 2733000 4 4 1 4 4 4 4 4 4 4 4 2310100 3716700 179.82 3279100 2328900 2551700 1943900 794240 1098000 988690 2072200 2150900 3466400 179500 3365200 2222600 2604900 1965700 902040 1188600 957600 1968800 3 3 1 3 3 3 3 3 3 3 3 834220 1455000 0 1288600 710990 502030 879540 250920 355310 359800 806660 776730 1357000 65348 1314600 685830 554310 867110 271050 400420 346910 764190 1 1 0 1 1 1 1 1 1 1 1 122310000 87521000 34788000 3269 787 3055 18941;18942;18943;18944 22799;22800;22801;22802 22802 4 DRDPEAQFEMPYVVR Oxidation (M) 1866.857 0.85704752 128 O14744;O14744-5;O14744-2;O14744-3;O14744-4 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed yes no 0 0 1 1 By MS/MS By MS/MS 2.5 0.957 1 2 2 1 3 3 44.515 44.45 3 1.7692E-06 14841 20211116_3441_TMUAki_TMT10x_S_F3 107.63 95.842 8327500 13283000 107290 15279000 10968000 12693000 8826300 11491000 14194000 10977000 11792000 7754200 12402000 783850 15408000 10467000 13064000 9231100 11728000 14120000 10742000 11450000 9 9 3 9 9 9 9 9 9 9 9 3988300 6032400 84316 6935900 7252100 9124300 5378300 5023300 6475800 4867500 5124800 3714000 5632300 434360 7044700 6910300 9068100 5587400 5309600 6492000 4760300 4985500 4 4 2 4 4 4 4 4 4 4 4 4339200 7250500 22977 8343100 3716400 3568900 3448100 6467300 7718600 6109600 6667400 4040200 6769600 349490 8362800 3556600 3995400 3643700 6418500 7628200 5981700 6464300 5 5 1 5 5 5 5 5 5 5 5 2069300000 1113800000 955500000 3270 128 3056 18945;18946;18947;18948;18949;18950 22803;22804;22805;22806;22807;22808;22809;22810;22811 22809 95 9 DRDPEAQFEMPYVVR Unmodified 1850.8621 0.8621329 128 O14744;O14744-5;O14744-2;O14744-3;O14744-4 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed yes no 0 0 0 1 By MS/MS 4 0 1 1 54.008 54.172 3 1.0776E-09 16119 20211116_3431_TMUAki_TMT10x_P_F4 131.4 113.91 5118200 7961000 162940 9410500 8010900 9559300 6052700 5324000 4982400 5272600 6602800 4766800 7433900 616700 9500100 7641900 9634000 6208800 5625300 5173100 5151600 6319300 2 2 2 2 2 2 2 2 2 2 2 5118200 7961000 162940 9410500 8010900 9559300 6052700 5324000 4982400 5272600 6602800 4766800 7433900 616700 9500100 7641900 9634000 6208800 5625300 5173100 5151600 6319300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 511500000 511500000 0 3271 128 3056 18951 22812;22813 22813 2 DRDPVFEITGAPGNVER Unmodified 1870.9173 0.91733959 7 A1L020 MEX3A RNA-binding protein MEX3A yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 2 2 2 4 2 49.331 49.252 3 5.1521E-11 15291 20211116_3429_TMUAki_TMT10x_P_F2 132.14 111.76 8104900 13965000 90942 14959000 10676000 12781000 9216500 12016000 11990000 10903000 12005000 7546900 13034000 767160 15158000 10204000 13138000 9510900 12222000 12076000 10694000 11581000 5 5 3 5 5 5 5 5 5 5 5 3162400 5336000 16613 5361400 5682800 8376400 4515700 5077200 4931600 4594400 4755100 2944600 4979100 312020 5512800 5420600 8273200 4654400 5314200 4992600 4507100 4592600 2 2 1 2 2 2 2 2 2 2 2 4942500 8628900 74330 9597400 4993400 4405000 4700800 6938700 7057900 6308400 7250100 4602300 8055300 455140 9644900 4783400 4864800 4856500 6908100 7083900 6187100 6988000 3 3 2 3 3 3 3 3 3 3 3 1078800000 683140000 395660000 3272 7 3057 18952;18953;18954;18955;18956;18957 22814;22815;22816;22817;22818;22819 22814 6 DRDTQNLQAQEEEREFYNAR Unmodified 2511.1375 0.13745613 2260 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 yes yes 0 0 0 2 By MS/MS By MS/MS 1.5 0.764 4 1 1 3 3 36.683 36.583 3;4 1.081E-240 10550 20211116_3439_TMUAki_TMT10x_S_F1 471.66 462.32 1106500 1776100 13372 2172800 1831300 1834800 1214300 1557700 1665100 1337900 1653300 1030400 1658800 109310 2183600 1740900 1883800 1277900 1591200 1673800 1315700 1595300 5 5 3 5 5 5 5 5 5 5 5 604840 913870 11988 1123800 1479900 1490400 893590 852740 925010 719830 922160 563250 853530 72389 1137100 1404900 1481400 938030 895210 939560 708500 889660 2 2 1 2 2 2 2 2 2 2 2 501710 862260 1383.8 1049000 351340 344340 320730 704960 740110 618080 731180 467120 805280 36918 1046400 335950 402360 339910 695950 734270 607220 705620 3 3 2 3 3 3 3 3 3 3 3 718870000 498230000 220640000 3273 2260 3058 18958;18959;18960;18961;18962;18963 22820;22821;22822;22823;22824 22822 5 DRDVTFSPATIENELIK Unmodified 1946.9949 0.99492121 1238 P55145 MANF Mesencephalic astrocyte-derived neurotrophic factor yes yes 0 0 0 1 By MS/MS By MS/MS 3.56 1.57 1 2 1 2 2 1 5 4 70.15 70.056 3 1.8109E-21 23705 20211116_3429_TMUAki_TMT10x_P_F2 165.9 136.57 61538000 91656000 622060 94608000 57452000 82958000 64956000 41448000 37732000 43372000 63105000 57299000 85536000 5151400 96133000 55283000 84298000 64652000 44294000 40477000 42280000 60090000 14 14 8 14 14 14 14 14 14 14 14 53824000 78837000 433500 81962000 48936000 75458000 56060000 35758000 32801000 37198000 53617000 50115000 73575000 4325000 83297000 47097000 76381000 55771000 38403000 35126000 36270000 51078000 12 12 6 12 12 12 12 12 12 12 12 7713700 12819000 188560 12646000 8515400 7499500 8896100 5690100 4930900 6174100 9488400 7183600 11961000 826480 12836000 8186000 7916800 8881000 5891100 5351500 6010000 9012100 2 2 2 2 2 2 2 2 2 2 2 5881900000 4836300000 1045500000 3274 1238 3059 18964;18965;18966;18967;18968;18969;18970;18971;18972 22825;22826;22827;22828;22829;22830;22831;22832;22833;22834;22835;22836;22837;22838;22839;22840;22841 22829 17 DREALFNEFVAAAR Unmodified 1607.8056 0.80560429 132 O14776;O14776-2 TCERG1 Transcription elongation regulator 1 yes no 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 62.234 62.226 3 2.2616E-29 18856 20211116_3445_TMUAki_TMT10x_S_F6 199.37 171.51 2063800 3314500 5009.7 3450300 2163600 2240500 2157500 2203200 2660800 2400800 2567600 1921600 3093300 177170 3492200 2074700 2356200 2204400 2247800 2681600 2336600 2479800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2063800 3314500 5009.7 3450300 2163600 2240500 2157500 2203200 2660800 2400800 2567600 1921600 3093300 177170 3492200 2074700 2356200 2204400 2247800 2681600 2336600 2479800 1 1 1 1 1 1 1 1 1 1 1 467030000 0 467030000 3275 132 3060 18973;18974 22842;22843 22843 2 DREEALHQFR Unmodified 1299.632 0.63199703 104 O00571;O00571-2;O15523;O15523-2 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 0 1 By MS/MS By MS/MS 2.71 1.03 1 2 2 2 5 2 29.074 28.941 3;4 5.7741E-10 7142 20211116_3429_TMUAki_TMT10x_P_F2 190.26 157.03 912420 1474200 36913 1453500 1643800 1494700 1038900 938800 968260 879040 1245400 849830 1375500 120290 1484900 1563200 1507700 1083300 980770 997970 860980 1192800 6 6 6 6 6 6 6 6 6 6 6 668110 1049800 32255 1039700 1374800 1263000 773770 690230 704240 650230 877710 622320 979500 95349 1064700 1305100 1260000 814140 729490 725640 636700 841320 4 4 4 4 4 4 4 4 4 4 4 244300 424470 4658.1 413830 269040 231710 265150 248560 264020 228810 367720 227510 396030 24942 420200 258150 247660 269130 251280 272330 224280 351520 2 2 2 2 2 2 2 2 2 2 2 187280000 98326000 88952000 3276 104 3061 18975;18976;18977;18978;18979;18980;18981 22844;22845;22846;22847;22848;22849 22845 6 DREEDGGGLEPAAVAR Unmodified 1640.7754 0.77542638 2448 Q96EU6;Q96EU6-2 RRP36 Ribosomal RNA processing protein 36 homolog yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 32.328 32.343 3 8.8055E-29 6925 20211116_3428_TMUAki_TMT10x_P_F1 180.78 153.37 182620 270660 3598.2 320260 346830 286340 215110 229830 259230 194950 284910 170070 252740 20794 322700 329460 292530 226450 235480 262700 191840 274050 2 2 2 2 2 2 2 2 2 2 2 83921 120090 3084.4 152260 268190 200310 129930 104770 123120 93817 134110 78161 112180 12413 153780 253860 198950 138810 111020 125940 92078 129030 1 1 1 1 1 1 1 1 1 1 1 98704 150560 513.82 168000 78642 86026 85180 125060 136120 101140 150800 91907 140560 8381.1 168930 75601 93571 87637 124470 136770 99761 145010 1 1 1 1 1 1 1 1 1 1 1 28167000 16820000 11348000 3277 2448 3062 18982;18983 22850;22851 22850 2 DREGFFTNGLTLGAK Unmodified 1624.8209 0.82092001 920;921 P35080;P35080-2 PFN2 Profilin-2 no no 0 0 0 1 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 58.436 58.69 3 2.2798E-24 18759 20211116_3435_TMUAki_TMT10x_P_F7 195.6 168.57 53637000 89882000 70624 83348000 69032000 92888000 60195000 84036000 82582000 76730000 76636000 49941000 83845000 4606100 85633000 65965000 93841000 62214000 85670000 82823000 75240000 74112000 8 8 2 8 8 8 8 8 8 8 8 25234000 40143000 4960.8 38311000 35597000 59653000 33619000 36140000 36787000 33872000 34003000 23495000 37450000 2157800 39532000 34077000 58925000 34303000 37863000 37187000 33175000 32888000 4 4 1 4 4 4 4 4 4 4 4 28403000 49739000 65663 45038000 33435000 33236000 26576000 47896000 45796000 42858000 42632000 26447000 46395000 2448300 46102000 31888000 34916000 27911000 47807000 45636000 42065000 41224000 4 4 1 4 4 4 4 4 4 4 4 11828000000 5645900000 6181900000 3278 920;921 3063 18984;18985;18986;18987;18988;18989 22852;22853;22854;22855;22856;22857;22858;22859 22853 8 DREIQLEISGK Unmodified 1286.683 0.68302954 3287 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 43.865 43.811 3 8.7133E-12 12216 20211116_3442_TMUAki_TMT10x_S_F4 176.25 127.63 16674000 27390000 153050 28916000 26139000 28373000 19985000 19678000 19367000 18674000 22229000 15526000 25563000 1535400 29383000 24910000 28743000 20574000 20416000 19831000 18279000 21355000 6 6 2 6 6 6 6 6 6 6 6 11329000 17918000 121170 18986000 19906000 23125000 14090000 12971000 12799000 12498000 14858000 10549000 16723000 1119500 19356000 18944000 23075000 14556000 13687000 13150000 12226000 14269000 4 4 1 4 4 4 4 4 4 4 4 5345200 9471900 31879 9929600 6233500 5247600 5894600 6706700 6568200 6175500 7371500 4976600 8840000 415940 10028000 5965900 5667500 6017700 6729300 6681000 6053200 7086100 2 2 1 2 2 2 2 2 2 2 2 1545100000 1090400000 454660000 3279 3287 3064 18990;18991;18992;18993;18994;18995 22860;22861;22862;22863;22864;22865;22866 22866 7 DRELDLR Unmodified 915.47739 0.47739386 584 P09661 SNRPA1 U2 small nuclear ribonucleoprotein A' yes yes 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 30.409 30.354 3 0.0033518 7703 20211116_3429_TMUAki_TMT10x_P_F2 104.06 19.489 411100 642720 4449.3 613540 559160 554620 477310 362500 404350 417490 544530 382780 599620 37001 627090 534140 564330 486180 379910 419520 405480 520950 2 2 1 2 2 2 2 2 2 2 2 224600 364580 4449.3 333720 353130 403880 288990 225030 245790 255170 298850 209150 340080 24567 343680 337250 403100 295150 238720 253820 247970 286640 1 1 1 1 1 1 1 1 1 1 1 186500 278140 0 279820 206030 150750 188320 137480 158560 162320 245690 173630 259540 12434 283420 196890 161230 191020 141190 165700 157500 234310 1 1 0 1 1 1 1 1 1 1 1 19495000 16632000 2863300 3280 584 3065 18996;18997;18998 22867;22868 22867 2 DREVGIPPEQSLETAK Unmodified 1767.9003 0.90029254 1296 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 0 1 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 42.889 42.833 3 3.9197E-10 12264 20211116_3430_TMUAki_TMT10x_P_F3 119.55 100.96 2715000 4507100 24218 5558200 2505900 2239400 1933000 4999900 5157900 3882200 4756900 2528000 4209600 239120 5546400 2389400 2548100 2090500 4910800 5091900 3837600 4601200 5 5 4 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2715000 4507100 24218 5558200 2505900 2239400 1933000 4999900 5157900 3882200 4756900 2528000 4209600 239120 5546400 2389400 2548100 2090500 4910800 5091900 3837600 4601200 5 5 4 5 5 5 5 5 5 5 5 163450000 0 163450000 3281 1296 3066 18999;19000;19001 22869;22870;22871;22872;22873;22874 22869 6 DRFSAEDEALSNIAR Unmodified 1692.8067 0.80672651 3334 Q9Y608;Q9Y608-2;Q9Y608-4;Q9Y608-5 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 yes no 0 0 0 1 By MS/MS 3 0 1 1 48.127 47.778 3 0.0098329 16221 20211116_3441_TMUAki_TMT10x_S_F3 59.281 34.561 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3282 3334 3067 19002 22875 22875 1 DRFTDILVR Unmodified 1133.6193 0.61930707 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 0 1 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 47.217 47.359 3 9.862E-06 12720 20211116_3445_TMUAki_TMT10x_S_F6 157.24 92.408 5057400 7812400 3328.5 10402000 7009800 6646900 4718700 5906700 6033900 5522100 6651700 4708700 7299500 424950 10372000 6662300 6986400 4946900 6031300 6102900 5409000 6397600 4 4 1 4 4 4 4 4 4 4 4 2282500 3466700 3328.5 4686100 4439400 4627700 2564800 2631300 2804300 2461500 3091500 2125300 3239300 219990 4693600 4209600 4673200 2707100 2771000 2852600 2411000 2973300 2 2 1 2 2 2 2 2 2 2 2 2774800 4345700 0 5715600 2570400 2019200 2153800 3275400 3229600 3060600 3560300 2583500 4060100 204970 5678800 2452700 2313300 2239800 3260400 3250200 2998000 3424200 2 2 0 2 2 2 2 2 2 2 2 1229500000 752070000 477450000 3283 196 3068 19003;19004;19005;19006;19007 22876;22877;22878;22879 22879 4 DRGFELTFK Unmodified 1111.5662 0.56620887 976 P39656;P39656-3 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 0 0 0 1 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 51.278 51.4 3 8.9854E-05 14362 20211116_3445_TMUAki_TMT10x_S_F6 136.49 116.18 14780000 20396000 18545 27871000 15869000 14804000 12157000 9657100 10431000 9251800 14197000 13761000 19060000 1207000 27710000 15120000 15771000 12472000 10066000 10821000 9052500 13579000 3 3 1 3 3 3 3 3 3 3 3 9775600 13221000 0 18679000 10710000 11785000 7694200 6291700 7061900 6275300 9556400 9101600 12357000 772640 18567000 10190000 12307000 7942600 6673700 7300500 6129400 9141500 2 2 0 2 2 2 2 2 2 2 2 5003900 7175500 18545 9191700 5159200 3019100 4462600 3365400 3369400 2976500 4641100 4659300 6703000 434320 9142400 4930500 3464200 4529200 3392600 3520800 2923100 4437700 1 1 1 1 1 1 1 1 1 1 1 1103800000 492920000 610840000 3284 976 3069 19008;19009;19010;19011;19012;19013 22880;22881;22882;22883;22884;22885;22886 22885 7 DRGFGAPR Unmodified 874.44095 0.44094878 710 P17844;P17844-2 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 1 By MS/MS 5 0 1 1 26.574 26.5 3 0.059396 5302 20211116_3433_TMUAki_TMT10x_P_F5 45.74 28.627 267800 434040 0 389260 325590 483130 322840 227330 232530 218420 296940 249320 404830 19336 401680 311880 480640 324820 243770 242790 213690 284450 1 1 0 1 1 1 1 1 1 1 1 267800 434040 0 389260 325590 483130 322840 227330 232530 218420 296940 249320 404830 19336 401680 311880 480640 324820 243770 242790 213690 284450 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3902200 3902200 0 3285 710 3070 19014 22887 22887 1 DRGFGFIR Unmodified 966.50355 0.50354903 2323 Q8WXF1;Q8WXF1-2 PSPC1 Paraspeckle component 1 yes no 0 0 0 1 By matching By MS/MS 4.25 3.27 2 1 1 1 3 39.427 39.495 3 0.012521 11880 20211116_3439_TMUAki_TMT10x_S_F1 68.625 32.44 3567800 5952400 0 6023100 3195600 2934900 3197300 4958300 5028000 4285400 5155300 3321700 5554500 254600 6093400 3061800 3225800 3299800 4919000 5039500 4213100 4969200 5 5 0 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3567800 5952400 0 6023100 3195600 2934900 3197300 4958300 5028000 4285400 5155300 3321700 5554500 254600 6093400 3061800 3225800 3299800 4919000 5039500 4213100 4969200 5 5 0 5 5 5 5 5 5 5 5 108790000 55587000 53201000 3286 2323 3071 19015;19016;19017;19018 22888;22889;22890;22891;22892;22893 22890 6 DRIAKEEGA Unmodified 987.49852 0.49852324 975 P39023 RPL3 60S ribosomal protein L3 yes yes 0 0 0 2 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 28.917 28.747 3 0.022151 7051 20211116_3429_TMUAki_TMT10x_P_F2 61.958 46.077 596380 996560 11181 817750 688890 798740 595500 426770 474200 450330 642660 555370 929230 61160 846580 658860 806520 605170 453390 493700 438850 614740 2 2 2 2 2 2 2 2 2 2 2 335020 514160 5570.9 427360 399590 523830 313360 235990 269580 245020 337410 311980 479440 33872 443550 381320 521220 321010 254730 278570 238930 323390 1 1 1 1 1 1 1 1 1 1 1 261360 482400 5609.9 390390 289290 274910 282140 190780 204620 205310 305250 243390 449790 27288 403030 277550 285290 284160 198650 215130 199920 291350 1 1 1 1 1 1 1 1 1 1 1 21642000 8392600 13249000 3287 975 3072 19019;19020;19021 22894;22895 22894 2 DRIEITSLLPSR Unmodified 1398.7831 0.78307794 2251 Q8NFH3;Q8NFH3-2 NUP43 Nucleoporin Nup43 yes no 0 0 0 1 By MS/MS By MS/MS 7 0 3 1 2 55.453 55.978 3 2.8285E-12 18344 20211116_3446_TMUAki_TMT10x_S_F7 138.21 91.836 1958600 3283800 65913 3399200 2042300 1960100 1812100 3205700 2844300 2503900 2960500 1824200 3064500 224980 3438000 1956500 2113600 1882100 3175500 2852600 2474300 2852300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1958600 3283800 65913 3399200 2042300 1960100 1812100 3205700 2844300 2503900 2960500 1824200 3064500 224980 3438000 1956500 2113600 1882100 3175500 2852600 2474300 2852300 1 1 1 1 1 1 1 1 1 1 1 429620000 0 429620000 3288 2251 3073 19022;19023;19024 22896;22897;22898 22898 3 DRKNPLPPSVGVVDK Unmodified 1619.8995 0.89950468 2232 Q8NC51;Q8NC51-3;Q8NC51-2;Q8NC51-4 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 0 0 0 2 By MS/MS 7 0 1 1 38.597 39.036 4 0.0020306 10925 20211116_3435_TMUAki_TMT10x_P_F7 66.022 46.698 700150 1074300 6498.9 1095200 1279000 1455500 844120 813350 844750 737540 903440 651960 1002500 72211 1121200 1215800 1446100 878990 857090 861440 723440 869700 1 1 1 1 1 1 1 1 1 1 1 700150 1074300 6498.9 1095200 1279000 1455500 844120 813350 844750 737540 903440 651960 1002500 72211 1121200 1215800 1446100 878990 857090 861440 723440 869700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34938000 34938000 0 3289 2232 3074 19025 22899 22899 1 DRLEFWCTDVK Unmodified 1467.6816 0.68164933 3195 Q9UNM6;Q9UNM6-2 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 0 0 0 1 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 57.194 57.257 3 0.00074689 17622 20211116_3433_TMUAki_TMT10x_P_F5 81.805 59.272 17802000 27751000 40436 31503000 32647000 32824000 19203000 17587000 19589000 17203000 21838000 16576000 25908000 1700000 31893000 30966000 33015000 20193000 18639000 19992000 16817000 20997000 2 2 1 2 2 2 2 2 2 2 2 12534000 18712000 0 21879000 28214000 28060000 14670000 11275000 12879000 11613000 15101000 11670000 17472000 1237300 22189000 26711000 27827000 15533000 12321000 13259000 11328000 14498000 1 1 0 1 1 1 1 1 1 1 1 5268500 9039000 40436 9623600 4432500 4764000 4533500 6312600 6710500 5589600 6737100 4905800 8436500 462770 9703700 4255000 5187800 4660600 6318400 6732500 5488900 6498200 1 1 1 1 1 1 1 1 1 1 1 864270000 483170000 381100000 3290 3195 3075 19026;19027;19028 22900;22901;22902 22900 3 DRLHLQGQTMQDPFGEK Oxidation (M) 2014.9531 0.95307317 2829 Q9H832;Q9H832-2 UBE2Z Ubiquitin-conjugating enzyme E2 Z yes no 0 0 1 1 By MS/MS By MS/MS 5 0 2 1 1 40.004 40.081 4 8.7615E-05 9581 20211116_3444_TMUAki_TMT10x_S_F5 81.01 67.178 3134800 4737100 84192 5728000 4567000 4994700 3428900 3304700 3749400 3193900 3907500 2919400 4423900 358420 5762600 4355600 5095600 3547500 3442000 3806000 3123900 3764600 2 2 2 2 2 2 2 2 2 2 2 2315700 3358600 58462 4119400 3923900 4345800 2683300 2428500 2718700 2327800 2844400 2156500 3136800 268990 4152100 3734800 4370100 2787700 2562900 2768700 2277600 2740000 1 1 1 1 1 1 1 1 1 1 1 819110 1378400 25730 1608700 643110 648960 745610 876210 1030700 866100 1063100 762860 1287100 89425 1610500 620780 725420 759770 879100 1037200 846300 1024600 1 1 1 1 1 1 1 1 1 1 1 226070000 130210000 95857000 3291 2829 3076 19029;19030 22903;22904 22904 2964 2 DRLLASTLVHSVK Unmodified 1437.8304 0.83036248 3018 Q9NYF8;Q9NYF8-2;Q9NYF8-4;Q9NYF8-3 BCLAF1 Bcl-2-associated transcription factor 1 yes no 0 0 0 1 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 47.229 47.11 4 5.841E-06 12779 20211116_3428_TMUAki_TMT10x_P_F1 104.9 57.617 3575400 5606900 105000 6613900 5576600 6338500 3979000 3839300 4657400 4276400 5052100 3329900 5235600 422320 6672100 5313300 6418000 4140600 4042800 4722400 4158600 4861400 3 3 3 3 3 3 3 3 3 3 3 2111500 3353000 64974 3936200 4461900 5039300 2755000 2167200 2704100 2388800 2931000 1966500 3130900 268530 3990900 4239300 5001100 2882200 2355000 2761200 2323900 2820400 2 2 2 2 2 2 2 2 2 2 2 1463900 2254000 40031 2677700 1114800 1299200 1224000 1672200 1953300 1887600 2121100 1363300 2104800 153790 2681200 1074100 1416900 1258400 1687800 1961200 1834600 2041000 1 1 1 1 1 1 1 1 1 1 1 862360000 607030000 255340000 3292 3018 3077 19031;19032;19033 22905;22906;22907 22905 3 DRLLASTLVHSVKK Unmodified 1565.9253 0.9253255 3018 Q9NYF8;Q9NYF8-2;Q9NYF8-4;Q9NYF8-3 BCLAF1 Bcl-2-associated transcription factor 1 yes no 0 0 0 2 By matching By MS/MS 3.5 0.5 1 1 1 1 45.769 45.869 5 5.4522E-09 13067 20211116_3442_TMUAki_TMT10x_S_F4 122.33 108.42 2285000 3529200 18634 4802300 1853600 1678800 1475800 2948500 3773700 3011200 3323700 2127700 3297900 200770 4762500 1769000 1931500 1587900 2935600 3722500 2938300 3220200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2285000 3529200 18634 4802300 1853600 1678800 1475800 2948500 3773700 3011200 3323700 2127700 3297900 200770 4762500 1769000 1931500 1587900 2935600 3722500 2938300 3220200 2 2 2 2 2 2 2 2 2 2 2 263970000 55896000 208080000 3293 3018 3078 19034;19035 22908;22909 22908 2 DRLPLAVVGSNTIIEVNGK Unmodified 1994.116 0.1160394 1838 Q16181;Q16181-2 SEPT7 Septin-7 yes no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 64.809 65.241 3 6.3805E-07 20374 20211116_3436_TMUAki_TMT10x_P_F8 88.019 75.039 4439900 7599000 0 7607500 6067600 5153300 5398300 4765600 4193200 5310400 6049900 4133400 7090700 316270 7723600 5796200 5392500 5473400 4881200 4384500 5164000 5778600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4439900 7599000 0 7607500 6067600 5153300 5398300 4765600 4193200 5310400 6049900 4133400 7090700 316270 7723600 5796200 5392500 5473400 4881200 4384500 5164000 5778600 1 1 0 1 1 1 1 1 1 1 1 448450000 0 448450000 3294 1838 3079 19036;19037 22910;22911 22910 2 DRLPLAVVGSNTIIEVNGKR Unmodified 2150.2172 0.21715042 1838 Q16181;Q16181-2 SEPT7 Septin-7 yes no 0 0 0 2 By MS/MS By matching 2 0 2 1 1 57.526 57.288 4 6.1877E-51 18559 20211116_3429_TMUAki_TMT10x_P_F2 224.03 206.33 2894100 4526400 51525 4574600 3744300 5985300 3472000 3354400 3711300 3287700 3304100 2695100 4223800 299870 4684600 3586500 5951300 3543400 3541300 3750700 3213700 3199900 1 1 1 1 1 1 1 1 1 1 1 2894100 4526400 51525 4574600 3744300 5985300 3472000 3354400 3711300 3287700 3304100 2695100 4223800 299870 4684600 3586500 5951300 3543400 3541300 3750700 3213700 3199900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1571100000 932050000 639060000 3295 1838 3080 19038;19039 22912 22912 1 DRLVPGPVFGSK Unmodified 1270.7034 0.70337105 1577 Q12907 LMAN2 Vesicular integral-membrane protein VIP36 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 49.295 49.164 3 2.9058E-06 15727 20211116_3439_TMUAki_TMT10x_S_F1 115.82 97.071 47328000 79630000 13778000 103670000 74770000 109630000 64850000 74492000 56898000 62450000 74618000 44170000 74393000 17149000 104150000 72278000 110530000 66053000 77152000 58861000 61488000 71433000 2 2 2 2 2 2 2 2 2 2 2 35704000 59836000 10737000 78461000 59071000 94257000 49039000 58145000 42747000 47269000 55869000 33324000 55903000 13294000 78964000 57038000 94236000 50072000 60614000 44229000 46613000 53488000 1 1 1 1 1 1 1 1 1 1 1 11624000 19794000 3041200 25207000 15700000 15375000 15810000 16348000 14151000 15181000 18749000 10846000 18490000 3855100 25186000 15241000 16291000 15980000 16537000 14632000 14875000 17944000 1 1 1 1 1 1 1 1 1 1 1 549960000 367180000 182780000 3296 1577 3081 19040;19041 22913;22914 22914 2 DRNCLDPFTSR Unmodified 1379.6252 0.62519709 2897 Q9NPQ8;Q9NPQ8-4;Q9NPQ8-2;Q9NPQ8-3 RIC8A Synembryn-A yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 37.925 38.021 3 2.7425E-06 8948 20211116_3444_TMUAki_TMT10x_S_F5 120.49 102.22 755060 1268500 7822.4 1343000 769530 662550 685800 1028200 994820 852040 1104700 703060 1183900 66472 1354700 736000 725160 709580 1021700 1002400 839410 1062200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 755060 1268500 7822.4 1343000 769530 662550 685800 1028200 994820 852040 1104700 703060 1183900 66472 1354700 736000 725160 709580 1021700 1002400 839410 1062200 2 2 1 2 2 2 2 2 2 2 2 106500000 60770000 45727000 3297 2897 3082 19042;19043;19044;19045 22915;22916;22917 22917 3 DRNVDVVLEDTCTVGEIK Unmodified 2061.0048 0.0048339665 3196 Q9UNN5;Q9UNN5-2 FAF1 FAS-associated factor 1 yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 58.54 58.283 3 1.5882E-17 19009 20211116_3429_TMUAki_TMT10x_P_F2 152.89 136.95 1966600 3044700 7302.1 3310700 2582900 3668700 2298700 2088200 1943900 1988200 2716400 1831200 2842100 178480 3364000 2469900 3679800 2335500 2199900 2020500 1945900 2596500 1 1 1 1 1 1 1 1 1 1 1 1966600 3044700 7302.1 3310700 2582900 3668700 2298700 2088200 1943900 1988200 2716400 1831200 2842100 178480 3364000 2469900 3679800 2335500 2199900 2020500 1945900 2596500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 545900000 545900000 0 3298 3196 3083 19046;19047 22918;22919 22918 2 DRPFFAGLVK Unmodified 1148.6342 0.63422886 770;684 P15531;P15531-2;P22392-2 NME1;NME2 Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase B no no 0 0 0 1 By MS/MS By MS/MS 3.22 2.62 2 4 1 2 5 4 56.479 56.329 2;3 9.0465E-08 18182 20211116_3429_TMUAki_TMT10x_P_F2 185.81 110.08 75784000 123400000 1084600 132840000 97615000 138470000 69411000 76150000 90580000 79124000 96299000 70568000 115180000 7304300 134940000 92935000 139310000 72537000 80658000 91426000 77154000 92719000 11 11 6 11 11 11 11 11 11 11 11 39869000 61749000 394520 67789000 73301000 107660000 39350000 39641000 46983000 40535000 48877000 37123000 57641000 3945400 69326000 69442000 105680000 41926000 43763000 47530000 39551000 47092000 7 7 5 7 7 7 7 7 7 7 7 35915000 61651000 690130 65053000 24314000 30812000 30061000 36509000 43597000 38590000 47422000 33445000 57539000 3358900 65612000 23493000 33629000 30611000 36895000 43896000 37603000 45628000 4 4 1 4 4 4 4 4 4 4 4 16654000000 10363000000 6290800000 3299 684;770 3084 19048;19049;19050;19051;19052;19053;19054;19055;19056 22920;22921;22922;22923;22924;22925;22926;22927;22928;22929;22930 22923 11 DRPFFPGLVK Unmodified 1174.6499 0.64987892 770 P22392-2;P22392;O60361 NME2;NME2P1 Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase yes no 0 0 0 1 By MS/MS By MS/MS 3.55 2.61 2 4 2 1 2 6 5 55.634 55.542 2;3 4.8857E-07 17830 20211116_3429_TMUAki_TMT10x_P_F2 176.38 130.7 80681000 129640000 844080 138680000 106390000 136440000 88137000 88170000 86150000 85243000 100930000 75128000 121000000 7796200 140810000 101600000 138050000 90294000 91994000 88254000 83373000 96910000 12 12 11 12 12 12 12 12 12 12 12 46660000 72520000 418330 77085000 81188000 107020000 59712000 49657000 49411000 49232000 57413000 43448000 67686000 4741900 78764000 77333000 105890000 61372000 53370000 51002000 48100000 55136000 6 6 6 6 6 6 6 6 6 6 6 34021000 57123000 425750 61596000 25202000 29419000 28425000 38514000 36739000 36011000 43522000 31680000 53318000 3054300 62041000 24269000 32160000 28922000 38624000 37253000 35273000 41774000 6 6 5 6 6 6 6 6 6 6 6 24008000000 15262000000 8745900000 3300 770 3085 19057;19058;19059;19060;19061;19062;19063;19064;19065;19066;19067 22931;22932;22933;22934;22935;22936;22937;22938;22939;22940;22941;22942 22933 12 DRPFMGGQKPNLADLAVYGVLR Oxidation (M) 2432.2634 0.26344869 2827 Q9H7Z7 PTGES2 Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form yes yes 0 0 1 2 By MS/MS 3 0 1 1 67.614 67.151 4 0.0021424 24143 20211116_3441_TMUAki_TMT10x_S_F3 58.952 40.588 9007500 16553000 0 12802000 12214000 13481000 11837000 14800000 13812000 13815000 12955000 8386000 15432000 688880 13336000 11695000 13721000 12088000 14951000 13934000 13533000 12523000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9007500 16553000 0 12802000 12214000 13481000 11837000 14800000 13812000 13815000 12955000 8386000 15432000 688880 13336000 11695000 13721000 12088000 14951000 13934000 13533000 12523000 2 2 0 2 2 2 2 2 2 2 2 707070000 0 707070000 3301 2827 3086 19068 22943;22944 22944 2963 2 DRPSAAHIVEALETDV Unmodified 1721.8584 0.85842773 2510 Q96KB5;Q96KB5-2 PBK Lymphokine-activated killer T-cell-originated protein kinase yes no 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 62.916 62.575 3 0.0034663 22273 20211116_3441_TMUAki_TMT10x_S_F3 64.136 43.755 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3302 2510 3087 19069;19070 22945;22946 22946 2 DRPVSQPSLVGSKEEPPPAR Unmodified 2145.1178 0.11783031 2805 Q9H4A3;Q9H4A3-5;Q9H4A3-2;Q9H4A3-6;Q9H4A3-7 WNK1 Serine/threonine-protein kinase WNK1 yes no 0 0 0 2 By MS/MS 4.5 0.5 1 1 2 33.704 33.689 4 0.00018581 8226 20211116_3433_TMUAki_TMT10x_P_F5 68.291 54.13 317740 500050 76.567 608660 912010 820800 421320 477130 470710 333010 480580 295850 467000 34737 616430 862150 815370 454550 498140 477050 331170 463290 1 1 1 1 1 1 1 1 1 1 1 317740 500050 76.567 608660 912010 820800 421320 477130 470710 333010 480580 295850 467000 34737 616430 862150 815370 454550 498140 477050 331170 463290 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 116550000 116550000 0 3303 2805 3088 19071;19072 22947 22947 1 DRSDCLGEHLYVMVNAK Oxidation (M) 2021.9299 0.92989488 1216 P54105 CLNS1A Methylosome subunit pICln yes yes 0 0 1 1 By MS/MS By MS/MS 4.8 0.748 2 2 1 3 2 44.161 44.29 4 4.7891E-05 12059 20211116_3431_TMUAki_TMT10x_P_F4 82.259 72.471 36718000 56781000 719330 62867000 54786000 58746000 38889000 34676000 38851000 33982000 45541000 34193000 53006000 3938600 63643000 52174000 59560000 40277000 36450000 39763000 33218000 43725000 6 6 5 6 6 6 6 6 6 6 6 26930000 41244000 634030 46088000 44181000 49048000 27732000 24873000 27868000 24559000 32835000 25079000 38503000 3065200 46719000 41988000 49241000 28994000 26500000 28521000 23998000 31521000 4 4 4 4 4 4 4 4 4 4 4 9788200 15538000 85297 16779000 10605000 9698600 11157000 9802300 10983000 9423600 12707000 9114200 14503000 873420 16924000 10186000 10319000 11283000 9949800 11242000 9219200 12204000 2 2 1 2 2 2 2 2 2 2 2 3826900000 2335600000 1491400000 3304 1216 3089 19073;19074;19075;19076;19077 22948;22949;22950;22951;22952;22953 22948 1630 6 DRSSFYVNGLTLGGQK Unmodified 1740.8795 0.87949752 540 P07737 PFN1 Profilin-1 yes yes 0 0 0 1 By MS/MS By MS/MS 3.8 3.43 3 2 2 3 53.936 53.822 3;4 6.6757E-29 17622 20211116_3439_TMUAki_TMT10x_S_F1 185.26 139.83 29306000 46183000 536970 57780000 36536000 32860000 27675000 18695000 23505000 22180000 32777000 27291000 43137000 3031400 57753000 34842000 34694000 28406000 19827000 24424000 21519000 31332000 6 6 6 6 6 6 6 6 6 6 6 15716000 23038000 318900 29832000 23766000 23775000 16860000 8427900 11426000 10601000 16277000 14635000 21522000 1712900 29863000 22634000 24249000 17295000 9408500 12034000 10264000 15552000 2 2 2 2 2 2 2 2 2 2 2 13590000 23145000 218070 27947000 12770000 9084200 10815000 10267000 12079000 11579000 16500000 12656000 21615000 1318500 27890000 12208000 10445000 11112000 10418000 12389000 11255000 15780000 4 4 4 4 4 4 4 4 4 4 4 6926800000 4212200000 2714600000 3305 540 3090 19078;19079;19080;19081;19082 22954;22955;22956;22957;22958;22959 22956 6 DRTDIQCLIPCAIDQDPYFR Unmodified 2495.1573 0.15732864 782 P23381;P23381-2 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 0 0 0 1 By MS/MS By MS/MS 5 0.816 1 1 1 1 2 75.153 75.138 3 2.2215E-07 23804 20211116_3444_TMUAki_TMT10x_S_F5 91.725 80.937 9334600 15099000 147550 14322000 10041000 15390000 11775000 9373300 8952600 10133000 11202000 8692500 14086000 913820 14682000 9679500 15478000 11765000 9856600 9311000 9865300 10736000 4 4 3 4 4 4 4 4 4 4 4 6248400 9811200 117090 8937700 6288500 12484000 8147900 7226100 6697300 7581900 7722500 5818700 9151600 620230 9232700 6083100 12381000 8122600 7623000 6913200 7390200 7417900 3 3 2 3 3 3 3 3 3 3 3 3086300 5287400 30464 5384600 3752100 2906400 3626700 2147200 2255300 2551300 3479300 2873800 4934100 293590 5449300 3596400 3096600 3642800 2233600 2397800 2475100 3318400 1 1 1 1 1 1 1 1 1 1 1 724570000 427770000 296800000 3306 782 3091 19083;19084;19085 22960;22961;22962;22963;22964 22963 5 DRTGFAVIHDAAR Unmodified 1427.727 0.72696004 1022 P42773 CDKN2C Cyclin-dependent kinase 4 inhibitor C yes yes 0 0 0 1 By MS/MS 5 0 2 2 32.513 32.453 3;4 0.00011194 7697 20211116_3433_TMUAki_TMT10x_P_F5 93.51 71.035 1278900 1813000 32828 1843600 2650600 2827900 1759900 1682000 1749200 1455100 1986200 1191000 1691900 155840 1893300 2521100 2794400 1831400 1761200 1788400 1430500 1908700 2 2 2 2 2 2 2 2 2 2 2 1278900 1813000 32828 1843600 2650600 2827900 1759900 1682000 1749200 1455100 1986200 1191000 1691900 155840 1893300 2521100 2794400 1831400 1761200 1788400 1430500 1908700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 130590000 130590000 0 3307 1022 3092 19086;19087 22965;22966 22965 2 DRTQIAICPNNHEVHIYEK Unmodified 2336.1332 0.1331628 167 O15143 ARPC1B Actin-related protein 2/3 complex subunit 1B yes yes 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 37.9 37.967 5 1.6296E-17 9899 20211116_3433_TMUAki_TMT10x_P_F5 148.69 131.19 4762900 6763500 41917 9060800 5681000 4275900 4361800 3775700 4315100 3794100 5092600 4434900 6319700 421160 9009700 5415000 4639900 4491900 3864700 4419500 3704700 4888500 4 4 2 4 4 4 4 4 4 4 4 1078500 1507000 0 1887800 2058300 1687700 1129200 914180 972900 755370 1058500 1004100 1407600 95834 1896000 1949700 1714300 1189100 963760 999630 744280 1018400 1 1 0 1 1 1 1 1 1 1 1 3684500 5256600 41917 7173000 3622800 2588200 3232700 2861600 3342200 3038700 4034100 3430800 4912100 325330 7113700 3465200 2925600 3302800 2900900 3419800 2960500 3870100 3 3 2 3 3 3 3 3 3 3 3 591060000 339370000 251700000 3308 167 3093 19088;19089 22967;22968;22969;22970 22967 4 DRTSGNVEDDLIIFPDDCEFK Unmodified 2484.1115 0.11148388 1839 Q16186 ADRM1 Proteasomal ubiquitin receptor ADRM1 yes yes 0 0 0 1 By MS/MS 1 0 1 1 72.386 72.386 3 2.8407E-07 23148 20211116_3428_TMUAki_TMT10x_P_F1 89.831 78.531 7792600 12692000 0 12984000 8703500 15430000 11105000 6150000 4995100 6203700 9502200 7254100 11844000 463960 13262000 8393000 15359000 10950000 6722800 5508900 6056600 9026900 2 2 0 2 2 2 2 2 2 2 2 7792600 12692000 0 12984000 8703500 15430000 11105000 6150000 4995100 6203700 9502200 7254100 11844000 463960 13262000 8393000 15359000 10950000 6722800 5508900 6056600 9026900 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 677640000 677640000 0 3309 1839 3094 19090 22971;22972 22971 2 DRVALSNMNVIDR Oxidation (M) 1517.762 0.76202492 1246 P55786;A6NEC2 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 0 0 1 1 By MS/MS By matching 4 0 2 1 1 33.835 33.883 3 0.038825 7984 20211116_3431_TMUAki_TMT10x_P_F4 45.332 30.641 512850 830180 13516 898140 1143300 973810 687550 568570 600480 460980 704190 477620 774900 63945 912580 1085600 978280 718540 595310 618380 454650 676090 1 1 1 1 1 1 1 1 1 1 1 512850 830180 13516 898140 1143300 973810 687550 568570 600480 460980 704190 477620 774900 63945 912580 1085600 978280 718540 595310 618380 454650 676090 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 90095000 88586000 1508900 3310 1246 3095 19091;19092 22973 22973 1690 1 DRVALSNMNVIDR Unmodified 1501.7671 0.7671103 1246 P55786;A6NEC2 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 0 0 0 1 By MS/MS 6 0 1 1 42.037 42.202 3 0.00017448 10665 20211116_3445_TMUAki_TMT10x_S_F6 88.421 70.835 676160 1181300 8661.3 1281900 650230 542870 628110 886130 847330 748350 1025300 629640 1102700 63768 1289600 623440 606340 645060 879510 858740 736560 983570 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 676160 1181300 8661.3 1281900 650230 542870 628110 886130 847330 748350 1025300 629640 1102700 63768 1289600 623440 606340 645060 879510 858740 736560 983570 1 1 1 1 1 1 1 1 1 1 1 19861000 0 19861000 3311 1246 3095 19093 22974 22974 1 DRVEISPEQLSAASTEAER Unmodified 2087.0131 0.013090467 1049 P46736;P46736-2;P46736-3;P46736-5 BRCC3 Lys-63-specific deubiquitinase BRCC36 yes no 0 0 0 1 By MS/MS By MS/MS 2.4 1.02 1 2 1 1 2 3 45.956 45.849 3 1.3087E-63 12614 20211116_3440_TMUAki_TMT10x_S_F2 265.19 245.61 1358300 2400600 25568 2759000 1800500 1984800 1371200 2187700 2286500 1858100 2134900 1264800 2241300 130310 2777700 1716400 2074300 1441700 2204200 2280700 1828300 2064100 3 3 2 3 3 3 3 3 3 3 3 508260 876300 0 950500 1054700 1324400 774940 746560 799270 678040 782390 473140 817960 37466 970020 1003500 1313100 801440 786160 811450 665030 755260 1 1 0 1 1 1 1 1 1 1 1 850090 1524300 25568 1808500 745820 660400 596270 1441100 1487200 1180100 1352500 791700 1423400 92846 1807700 712910 761130 640220 1418000 1469200 1163300 1308900 2 2 2 2 2 2 2 2 2 2 2 719530000 606640000 112890000 3312 1049 3096 19094;19095;19096;19097;19098 22975;22976;22977;22978;22979 22977 5 DRVGGFPNFLSNAFVSTAK Unmodified 2026.0272 0.027224389 2637 Q9BRJ7 NUDT16L1 Protein syndesmos yes yes 0 0 0 1 By MS/MS 4 0 1 1 74.429 74.318 3 2.3543E-05 24796 20211116_3442_TMUAki_TMT10x_S_F4 83.776 61.131 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3313 2637 3097 19099 22980 22980 1 DRVGVGIR Unmodified 870.50355 0.50354903 912 P33992 MCM5 DNA replication licensing factor MCM5 yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 28.447 28.434 3 0.017697 6125 20211116_3433_TMUAki_TMT10x_P_F5 62.338 22.135 192430 274480 0 270050 212030 311020 213320 192340 198140 213420 213820 179150 256100 14183 276420 203210 311650 215840 202180 202790 207570 205780 1 1 0 1 1 1 1 1 1 1 1 192430 274480 0 270050 212030 311020 213320 192340 198140 213420 213820 179150 256100 14183 276420 203210 311650 215840 202180 202790 207570 205780 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9089700 9089700 0 3314 912 3098 19100;19101 22981 22981 1 DRVHHEPQLSDK Unmodified 1459.7168 0.71678929 252 O43852;O43852-3;O43852-4;O43852-2;O43852-10;O43852-6;O43852-5;O43852-13;O43852-14;O43852-11;O43852-9;O43852-12;O43852-7;O43852-8 CALU Calumenin yes no 0 0 0 1 By MS/MS 3 0 1 1 28.449 28.176 4 0.013068 8435 20211116_3441_TMUAki_TMT10x_S_F3 59.898 45.208 77299 135690 1525.2 112720 118930 88702 91961 357360 69184 47935 91064 71985 126530 8413.1 116260 113450 97882 93985 340520 72156 59563 87169 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 77299 135690 1525.2 112720 118930 88702 91961 357360 69184 47935 91064 71985 126530 8413.1 116260 113450 97882 93985 340520 72156 59563 87169 1 1 1 1 1 1 1 1 1 1 1 4092400 0 4092400 3315 252 3099 19102 22982 22982 1 DRVTDALNATR Unmodified 1230.6317 0.63166267 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 4.12 1.05 1 1 2 4 5 3 30.615 30.596 2;3 7.8549E-18 7683 20211116_3431_TMUAki_TMT10x_P_F4 236.69 192.89 10288000 15573000 48679 22323000 27056000 15477000 10717000 7570600 11476000 7852400 12918000 9579300 14556000 1078700 22194000 25531000 16011000 11749000 8104700 11693000 7657400 12417000 8 8 4 8 8 8 8 8 8 8 8 7418700 11039000 48679 16497000 24401000 13525000 8030000 5251500 8330300 5573300 9118700 6907900 10321000 893910 16399000 22988000 13776000 9010500 5766600 8489500 5429900 8772100 5 5 4 5 5 5 5 5 5 5 5 2869600 4534200 0 5826500 2654400 1951400 2687000 2319100 3145900 2279100 3799300 2671400 4235700 184830 5794800 2542700 2235300 2738100 2338100 3203500 2227500 3644800 3 3 0 3 3 3 3 3 3 3 3 1812400000 1587500000 224880000 3316 613 3100 19103;19104;19105;19106;19107;19108;19109;19110 22983;22984;22985;22986;22987;22988;22989;22990;22991 22984 9 DRVTSAVEALLSADSASR Unmodified 1846.9385 0.93846896 1036 P45974;P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 1 By MS/MS By MS/MS 5.71 1.03 1 2 2 2 3 4 70.308 70.42 3 7.2509E-58 21812 20211116_3434_TMUAki_TMT10x_P_F6 245.48 224.11 27777000 45074000 642780 41001000 29650000 43253000 31451000 26218000 24540000 26928000 31779000 25868000 42043000 2928200 42150000 28514000 43541000 31594000 27537000 25524000 26270000 30432000 8 8 8 8 8 8 8 8 8 8 8 17234000 27250000 354230 23753000 16575000 31653000 18563000 16405000 15344000 16669000 18639000 16049000 25414000 1749700 24597000 15964000 31416000 18626000 17457000 15868000 16269000 17879000 4 4 4 4 4 4 4 4 4 4 4 10543000 17823000 288540 17248000 13075000 11600000 12888000 9812600 9195300 10259000 13140000 9818600 16629000 1178500 17552000 12550000 12125000 12968000 10080000 9656200 10001000 12553000 4 4 4 4 4 4 4 4 4 4 4 6186700000 3041800000 3144900000 3317 1036 3101 19111;19112;19113;19114;19115;19116;19117 22992;22993;22994;22995;22996;22997;22998;22999;23000 22993 9 DRYDSFIELQEK Unmodified 1541.7362 0.73618733 2941 Q9NSD9;Q9NSD9-2 FARSB Phenylalanine--tRNA ligase beta subunit yes no 0 0 0 1 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 54.053 54.054 3 8.314E-12 16001 20211116_3431_TMUAki_TMT10x_P_F4 163.33 139.73 60361000 101270000 1036900 115870000 75427000 78049000 63098000 61994000 54317000 57976000 77268000 56210000 94546000 6090900 116610000 72070000 81484000 64376000 63721000 56457000 56788000 73827000 8 8 6 8 8 8 8 8 8 8 8 24935000 40267000 621800 46048000 41731000 52226000 33793000 28755000 24022000 24665000 32985000 23221000 37595000 2792300 46661000 39846000 52295000 34390000 30298000 25184000 24258000 31542000 3 3 2 3 3 3 3 3 3 3 3 35426000 60998000 415140 69822000 33696000 25824000 29305000 33239000 30295000 33311000 44283000 32988000 56951000 3298600 69949000 32224000 29188000 29986000 33423000 31273000 32531000 42285000 5 5 4 5 5 5 5 5 5 5 5 4087700000 2299400000 1788300000 3318 2941 3102 19118;19119;19120;19121;19122;19123 23001;23002;23003;23004;23005;23006;23007;23008 23003 8 DRYGGQPLFSEK Unmodified 1395.6783 0.67827852 1874 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 0 1 By MS/MS 5 0 1 1 41.144 41.199 3 0.0013575 11147 20211116_3433_TMUAki_TMT10x_P_F5 70.628 47.749 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3319 1874 3103 19124 23009 23009 1 DRYGGQPLFSEKFPTLWSGAR Unmodified 2411.2022 0.20222864 1874 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 0 2 By matching By MS/MS 3 0 2 1 1 66.955 66.579 4 6.2581E-10 23897 20211116_3441_TMUAki_TMT10x_S_F3 108.64 84.84 2605600 4715900 0 3733700 5352600 2410000 2971400 2461100 1992800 2443600 3423300 2425700 4396800 203120 3858600 5069100 2537900 3108200 2499100 2120900 2387300 3258000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2605600 4715900 0 3733700 5352600 2410000 2971400 2461100 1992800 2443600 3423300 2425700 4396800 203120 3858600 5069100 2537900 3108200 2499100 2120900 2387300 3258000 1 1 0 1 1 1 1 1 1 1 1 851740000 427740000 424000000 3320 1874 3104 19125;19126 23010 23010 1 DRYGVFPLR Unmodified 1121.5982 0.5981777 1500 Q02880;Q02880-2 TOP2B DNA topoisomerase 2-beta yes no 0 0 0 1 By MS/MS By MS/MS 5 3.29 2 1 2 3 2 43.07 43.167 3 2.9538E-05 11283 20211116_3436_TMUAki_TMT10x_P_F8 147.75 110.2 5844700 9421700 126.03 9051700 8935400 10125000 6720000 7214100 8050000 7130100 7793700 5441700 8790000 493970 9276400 8509800 10183000 6973400 7479200 8122200 6967100 7526200 6 6 1 6 6 6 6 6 6 6 6 3665500 5889500 0 5578900 7030200 7787300 4493700 4441000 5026800 4364300 4749400 3412700 5494300 324360 5746400 6675400 7721800 4707300 4681900 5080700 4265600 4590100 3 3 0 3 3 3 3 3 3 3 3 2179200 3532200 126.03 3472700 1905200 2338100 2226300 2773100 3023200 2765800 3044300 2029000 3295700 169610 3530000 1834400 2461700 2266100 2797400 3041500 2701500 2936100 3 3 1 3 3 3 3 3 3 3 3 864610000 609830000 254780000 3321 1500 3105 19127;19128;19129;19130;19131 23011;23012;23013;23014;23015;23016 23013 6 DSAAAVVVYDITNVNSFQQTTK Unmodified 2370.1703 0.17031939 743 P20340-2;P20340-4;Q53S08;Q9H0N0 RAB6A;RAB6C Ras-related protein Rab-6A;Ras-related protein Rab-6C yes no 0 0 0 0 By MS/MS By MS/MS 6 0.707 1 2 1 2 2 78.515 78.521 3 3.6925E-14 25141 20211116_3434_TMUAki_TMT10x_P_F6 124.31 106.82 13053000 23704000 353630 20431000 16859000 22009000 17336000 15556000 15446000 17390000 18019000 12155000 22107000 1397900 21098000 16194000 22179000 17501000 16197000 15887000 16909000 17302000 4 4 3 4 4 4 4 4 4 4 4 6194900 10782000 302900 9622400 6658000 13422000 7941100 8039600 7712000 8255500 8258400 5770300 10057000 802380 9955200 6434600 13318000 7980800 8452300 7875100 8053800 7949600 2 2 2 2 2 2 2 2 2 2 2 6857600 12922000 50729 10809000 10201000 8587000 9394600 7516100 7733700 9134900 9760100 6385000 12050000 595490 11143000 9759700 8860800 9520100 7744400 8012300 8854900 9352500 2 2 1 2 2 2 2 2 2 2 2 5286500000 1922600000 3363900000 3322 743 3106 19132;19133;19134;19135 23017;23018;23019;23020 23018 4 DSALETLQGQLEEK Unmodified 1559.7679 0.76788138 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3 1.07 1 1 2 3 5 2 66.121 65.931 2;3 2.8548E-19 23647 20211116_3441_TMUAki_TMT10x_S_F3 170.79 138.73 29427000 50254000 435640 49253000 35344000 49463000 36668000 37270000 34455000 35319000 39449000 27403000 46889000 2857500 50320000 33945000 50103000 37056000 38450000 35326000 34575000 37901000 9 9 7 9 9 9 9 9 9 9 9 16876000 28502000 315150 27724000 21002000 36697000 23748000 21930000 19440000 20626000 22555000 15715000 26592000 1710900 28472000 20223000 36499000 23811000 23003000 20076000 20198000 21662000 5 5 4 5 5 5 5 5 5 5 5 12551000 21752000 120480 21529000 14343000 12766000 12920000 15340000 15015000 14693000 16894000 11687000 20296000 1146600 21848000 13722000 13604000 13245000 15447000 15250000 14377000 16239000 4 4 3 4 4 4 4 4 4 4 4 3522200000 2446800000 1075400000 3323 1741 3107 19136;19137;19138;19139;19140;19141;19142 23021;23022;23023;23024;23025;23026;23027;23028;23029;23030 23027 10 DSAQNSVIIVDK Unmodified 1287.667 0.66704513 480 P02786 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes yes 0 0 0 0 By matching By MS/MS 3.5 0.5 1 1 1 1 47.183 47.266 3 0.00016216 13703 20211116_3442_TMUAki_TMT10x_S_F4 87.498 44.943 1333900 2059700 10742 2358700 1345400 1180400 1244200 1582800 1377400 1422000 1627600 1242100 1923000 120760 2367500 1288100 1284200 1271400 1584200 1404300 1395400 1562400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1333900 2059700 10742 2358700 1345400 1180400 1244200 1582800 1377400 1422000 1627600 1242100 1923000 120760 2367500 1288100 1284200 1271400 1584200 1404300 1395400 1562400 1 1 1 1 1 1 1 1 1 1 1 175960000 58003000 117950000 3324 480 3108 19143;19144 23031 23031 1 DSCPLDCK Unmodified 993.38957 0.38956641 1457 P84103;P84103-2 SRSF3 Serine/arginine-rich splicing factor 3 yes no 0 0 0 0 By MS/MS 3 0 1 1 35.569 35.329 2 0.006999 11140 20211116_3441_TMUAki_TMT10x_S_F3 90.709 69.245 823510 1506400 0 1189900 957070 872270 954330 764950 797490 797660 1069500 766730 1404500 66259 1231500 917360 905800 963300 784140 827830 777690 1023300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 823510 1506400 0 1189900 957070 872270 954330 764950 797490 797660 1069500 766730 1404500 66259 1231500 917360 905800 963300 784140 827830 777690 1023300 1 1 0 1 1 1 1 1 1 1 1 37683000 0 37683000 3325 1457 3109 19145 23032 23032 1 DSDKEGTSNSTSEDGPGDGFTILSSK Unmodified 2630.1467 0.14674299 3051 Q9P0M6 H2AFY2 Core histone macro-H2A.2 yes yes 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 55.381 55.362 4 2.0835E-08 17029 20211116_3442_TMUAki_TMT10x_S_F4 93.229 83.109 6046600 10277000 46688 10883000 8376700 11577000 7351200 8196300 8797000 7934400 8455900 5630300 9592000 577450 11070000 8009100 11675000 7555000 8496300 8874100 7759900 8167700 3 3 3 3 3 3 3 3 3 3 3 3875400 6864600 26611 7064100 6691600 9675700 5694500 5439400 5961300 5179800 5510000 3608600 6406200 385540 7231500 6392800 9600600 5836600 5736400 6036900 5069500 5329200 2 2 2 2 2 2 2 2 2 2 2 2171200 3412500 20077 3818900 1685200 1901500 1656600 2757000 2835700 2754600 2946000 2021700 3185800 191910 3838600 1616300 2074600 1718400 2759900 2837200 2690400 2838400 1 1 1 1 1 1 1 1 1 1 1 2339000000 1769600000 569420000 3326 3051 3110 19146;19147;19148 23033;23034 23034 2 DSDKRPSLGLAPGGLAVVGR Unmodified 1964.0803 0.080322592 444 O95785;O95785-4;O95785-3;O95785-2 WIZ Protein Wiz yes no 0 0 0 2 By MS/MS 4.5 3.5 1 1 2 49.27 49.094 4 2.116E-06 15760 20211116_3439_TMUAki_TMT10x_S_F1 88.755 69.177 8131700 14538000 62719 14636000 8489800 7708000 7200100 11520000 11800000 10317000 12091000 7571800 13566000 725860 14820000 8111000 8365300 7513200 11484000 11813000 10126000 11655000 5 5 3 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8131700 14538000 62719 14636000 8489800 7708000 7200100 11520000 11800000 10317000 12091000 7571800 13566000 725860 14820000 8111000 8365300 7513200 11484000 11813000 10126000 11655000 5 5 3 5 5 5 5 5 5 5 5 460750000 0 460750000 3327 444 3111 19149;19150 23035;23036;23037;23038;23039 23036 5 DSEDMGVVVSLGTGNR Oxidation (M) 1650.7519 0.75191374 1242 P55265;P55265-5;P55265-4;P55265-3;P55265-2 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 1 0 By MS/MS By MS/MS 2.43 0.495 4 3 3 4 45.139 44.984 2;3 7.8288E-15 13606 20211116_3429_TMUAki_TMT10x_P_F2 153.11 135.64 5395100 9005400 8467.1 9434500 8062500 8620200 5680300 8909200 8675700 7138200 8246600 5022900 8404600 418720 9582300 7666500 8838400 5979000 8990700 8679800 7044500 7968500 7 7 1 7 7 7 7 7 7 7 7 2496800 3779200 0 3952400 5108000 5921600 3154100 3960500 3975000 3036700 3915300 2324500 3527100 211920 4049300 4846600 5867000 3326900 4098100 4005800 3003900 3778800 3 3 0 3 3 3 3 3 3 3 3 2898300 5226200 8467.1 5482200 2954600 2698600 2526200 4948700 4700800 4101400 4331300 2698300 4877500 206800 5533000 2820000 2971400 2652200 4892600 4674000 4040600 4189600 4 4 1 4 4 4 4 4 4 4 4 675260000 409730000 265530000 3328 1242 3112 19151;19152;19153;19154;19155;19156;19157 23040;23041;23042;23043;23044;23045;23046;23047 23041 1687 8 DSEDNPQTLLFSATCPHWVFNVAK Unmodified 2775.2963 0.29626496 2918 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 78.386 78.399 3 8.1335E-23 25145 20211116_3447_TMUAki_TMT10x_S_F8 154.34 146.44 26975000 42790000 16056 44228000 28671000 33346000 32739000 14580000 13593000 17229000 28591000 25112000 39933000 1686800 44856000 27556000 34220000 32403000 15850000 15199000 16717000 27116000 6 6 2 6 6 6 6 6 6 6 6 15773000 23152000 16056 24562000 16477000 24440000 19297000 9015400 8049900 10606000 16272000 14683000 21609000 993470 24956000 15849000 24558000 19078000 9992200 8973300 10292000 15443000 4 4 2 4 4 4 4 4 4 4 4 11202000 19638000 0 19666000 12193000 8906200 13442000 5564400 5543100 6623000 12318000 10428000 18324000 693360 19900000 11707000 9661700 13325000 5857800 6225200 6424700 11673000 2 2 0 2 2 2 2 2 2 2 2 7721300000 3967800000 3753500000 3329 2918 3113 19158;19159;19160;19161 23048;23049;23050;23051;23052;23053 23053 6 DSEDNPQTLLFSATCPHWVFNVAKK Unmodified 2903.3912 0.39122798 2918 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 1 By MS/MS 8 0 1 1 76.595 76.605 4 0.0038823 25014 20211116_3436_TMUAki_TMT10x_P_F8 50.426 38.794 4490000 8088700 152650 7516000 4591400 8332600 5942600 4702100 3917100 4614200 5422700 4181700 7545400 515940 7720200 4445700 8356800 5894500 4961300 4127000 4510100 5184500 1 1 1 1 1 1 1 1 1 1 1 4490000 8088700 152650 7516000 4591400 8332600 5942600 4702100 3917100 4614200 5422700 4181700 7545400 515940 7720200 4445700 8356800 5894500 4961300 4127000 4510100 5184500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 688300000 688300000 0 3330 2918 3114 19162 23054 23054 1 DSEEPFSSVEIQAALSK Unmodified 1835.8789 0.8788884 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 0 By MS/MS By MS/MS 3 1 2 2 2 2 74.16 74.08 3 1.7591E-15 24239 20211116_3431_TMUAki_TMT10x_P_F4 146.78 128.41 12913000 22076000 96482 19932000 13803000 20780000 15008000 12496000 12564000 13534000 16287000 12024000 20591000 1098700 20498000 13266000 20931000 15085000 13154000 13021000 13175000 15596000 6 6 5 6 6 6 6 6 6 6 6 9343100 15633000 81711 14017000 9636600 16741000 10853000 8675200 8853300 9714500 11554000 8699400 14581000 780620 14454000 9270800 16705000 10883000 9258500 9190100 9444800 11062000 4 4 3 4 4 4 4 4 4 4 4 3570400 6443100 14771 5915100 4166200 4039300 4154800 3820300 3711100 3819400 4733100 3324500 6010100 318120 6043600 3995400 4225700 4201300 3895200 3831100 3730300 4534200 2 2 2 2 2 2 2 2 2 2 2 1387000000 824930000 562090000 3331 799 3115 19163;19164;19165;19166 23055;23056;23057;23058;23059;23060 23057 6 DSELASQNKPLWQCYLGR Unmodified 2164.0371 0.037137148 2945 Q9NTI5;Q9NTI5-2;Q9NTI5-3 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 0 0 0 1 By MS/MS 8 0 1 1 61.012 61.2 3 0.0001132 18649 20211116_3436_TMUAki_TMT10x_P_F8 74.519 61.577 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3332 2945 3116 19167 23061 23061 1 DSEQVAELKQELATLK Unmodified 1800.9469 0.94690838 288 O60763;O60763-2 USO1 General vesicular transport factor p115 yes no 0 0 0 1 By MS/MS By MS/MS 6 0.707 1 2 1 1 3 76.158 76.167 3 2.9975E-05 24582 20211116_3445_TMUAki_TMT10x_S_F6 91.622 51.962 25803000 45536000 80061 37638000 35825000 37353000 32205000 32901000 29822000 31778000 35665000 24024000 42460000 2100500 38950000 34248000 37971000 32782000 33642000 30650000 31082000 34224000 5 5 1 5 5 5 5 5 5 5 5 4871400 8004200 0 6656100 5586000 10610000 6584000 6064000 5266700 6075000 5829000 4535400 7463700 376100 6944600 5378700 10463000 6585500 6395300 5435600 5932700 5605600 1 1 0 1 1 1 1 1 1 1 1 20932000 37532000 80061 30982000 30239000 26743000 25621000 26837000 24555000 25703000 29836000 19488000 34996000 1724500 32006000 28870000 27508000 26197000 27247000 25214000 25149000 28618000 4 4 1 4 4 4 4 4 4 4 4 1381100000 375160000 1005900000 3333 288 3117 19168;19169;19170;19171 23062;23063;23064;23065;23066 23064 5 DSFDDRGPSLNPVLDYDHGSR Unmodified 2361.0622 0.062165924 1026 P43243 MATR3 Matrin-3 yes yes 0 0 0 1 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 50.142 50.24 4 6.2497E-11 14915 20211116_3442_TMUAki_TMT10x_S_F4 119.94 105.17 10096000 15831000 87000 17941000 16018000 21693000 12314000 12037000 12268000 11531000 13068000 9400900 14780000 981040 18210000 15269000 21651000 12683000 12711000 12511000 11283000 12581000 4 4 2 4 4 4 4 4 4 4 4 8237500 12944000 87000 14290000 14232000 19988000 10784000 9790700 9990000 9417600 10518000 7670500 12083000 840230 14568000 13564000 19782000 11094000 10458000 10217000 9213100 10130000 3 3 2 3 3 3 3 3 3 3 3 1858600 2886800 0 3651000 1786000 1705500 1529900 2246600 2278200 2113300 2550200 1730400 2696500 140810 3641500 1705300 1869600 1588400 2252900 2294600 2069500 2451600 1 1 0 1 1 1 1 1 1 1 1 2072100000 1109500000 962650000 3334 1026 3118 19172;19173;19174;19175 23067;23068;23069;23070 23070 4 DSFIGENSR Unmodified 1023.4621 0.46213773 62;2596 O00139;O00139-2;O00139-1;O00139-5;O00139-4;Q99661;Q99661-2 KIF2A;KIF2C Kinesin-like protein KIF2A;Kinesin-like protein KIF2C no no 0 0 0 0 By MS/MS 2 0 1 1 33.47 33.551 2 0.0021813 7532 20211116_3440_TMUAki_TMT10x_S_F2 88.496 57.266 55304 96476 0 102640 61966 47847 66442 49685 77147 47187 87632 51486 90046 3773.8 103450 59469 52164 67492 50349 78387 46188 84211 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 55304 96476 0 102640 61966 47847 66442 49685 77147 47187 87632 51486 90046 3773.8 103450 59469 52164 67492 50349 78387 46188 84211 1 1 0 1 1 1 1 1 1 1 1 4503300 0 4503300 3335 62;2596 3119 19176 23071 23071 1 DSFLADQLDPIYVAYNM Oxidation (M) 1989.903 0.90299466 3057 Q9P265 DIP2B Disco-interacting protein 2 homolog B yes yes 0 0 1 0 By MS/MS By MS/MS 2.4 1.02 1 2 1 1 2 3 81.949 81.936 2;3 0.0082868 30011 20211116_3441_TMUAki_TMT10x_S_F3 51.606 41.549 884250 1527400 3117.1 1526000 880780 1386500 1006400 889260 879700 951100 1055900 823160 1425200 53513 1554800 846400 1409900 1010300 931080 906740 926350 1013100 2 2 1 2 2 2 2 2 2 2 2 646020 1066000 0 1063500 537110 1066200 663610 617060 596100 646820 687560 601330 994710 29381 1085200 516720 1075900 664420 650940 612630 630490 660430 1 1 0 1 1 1 1 1 1 1 1 238220 461360 3117.1 462500 343660 320300 342770 272200 283600 304290 368300 221830 430500 24132 469620 329690 333990 345900 280140 294110 295860 352660 1 1 1 1 1 1 1 1 1 1 1 380510000 149640000 230880000 3336 3057 3120 19177;19178;19179;19180;19181 23072;23073;23074 23074 3105 3 DSFLADQLDPIYVAYNM Unmodified 1973.9081 0.90808003 3057 Q9P265 DIP2B Disco-interacting protein 2 homolog B yes yes 0 0 0 0 By MS/MS 2 0 1 1 83.632 83.624 2 0.007486 27942 20211116_3440_TMUAki_TMT10x_S_F2 63.537 47.965 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3337 3057 3120 19182 23075 23075 1 DSGAALGLGIALHSPCYAQVR Unmodified 2155.0844 0.084421692 2676 Q9BUM1 G6PC3 Glucose-6-phosphatase 3 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 60.583 60.678 3 5.9057E-35 17888 20211116_3447_TMUAki_TMT10x_S_F8 184.83 178.05 7664000 13161000 136610 13056000 9678500 11007000 8780800 9845300 9865500 9780000 10237000 7136400 12281000 714760 13296000 9260900 11313000 8987300 10067000 10002000 9554300 9863900 5 5 3 5 5 5 5 5 5 5 5 1692700 2654700 0 2576500 1964100 3683900 2032500 2321700 1907600 1974700 2029800 1576000 2476800 141320 2650500 1884800 3654000 2054200 2418900 1950400 1942900 1954300 1 1 0 1 1 1 1 1 1 1 1 5971400 10507000 136610 10480000 7714300 7322800 6748300 7523600 7957900 7805300 8207300 5560400 9803700 573440 10646000 7376100 7659200 6933100 7647800 8051700 7611400 7909500 4 4 3 4 4 4 4 4 4 4 4 2312300000 1149100000 1163200000 3338 2676 3121 19183;19184 23076;23077;23078;23079;23080 23078 5 DSGGKTPGDFSYAYQKPEETTR Unmodified 2433.1084 0.10844742 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 2 By MS/MS 6 0 1 1 42.909 43.074 4 0.032203 10967 20211116_3445_TMUAki_TMT10x_S_F6 42.254 24.659 1678200 2582800 26486 3692700 1002200 1191800 999540 3234500 4018700 2680200 3147700 1562700 2414200 154350 3651400 962480 1414300 1107500 3168900 3925300 2640500 3063400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1678200 2582800 26486 3692700 1002200 1191800 999540 3234500 4018700 2680200 3147700 1562700 2414200 154350 3651400 962480 1414300 1107500 3168900 3925300 2640500 3063400 1 1 1 1 1 1 1 1 1 1 1 87511000 0 87511000 3339 1057 3122 19185 23081 23081 1 DSGNIPEAIASYR Unmodified 1391.6681 0.66810776 180 O15294;O15294-3;O15294-2;O15294-4 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes no 0 0 0 0 By MS/MS 4 0 1 1 51.279 51.386 2 3.4326E-22 15379 20211116_3442_TMUAki_TMT10x_S_F4 179.59 159.28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3340 180 3123 19186 23082 23082 1 DSGPLPTPPGVSLLGEPPKDYR Unmodified 2291.1798 0.17976186 2163 Q8IY67-2 RAVER1 Ribonucleoprotein PTB-binding 1 yes yes 0 0 0 1 By MS/MS 6 0 1 1 66.83 66.763 3 1.5628E-12 20726 20211116_3445_TMUAki_TMT10x_S_F6 120.75 104.08 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3341 2163 3124 19187 23083 23083 1 DSGPPPSTVSEAEFEDIMKR Oxidation (M) 2207.0052 0.005227897 2202 Q8N684;Q8N684-2;Q8N684-3 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes no 0 0 1 1 By MS/MS 3 0 1 1 51.252 51.152 3 6.218E-05 16500 20211116_3430_TMUAki_TMT10x_P_F3 70.235 64.204 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3342 2202 3125 19188 23084 23084 2628 1 DSGRDYVAQFEASALGK Unmodified 1812.8642 0.86424139 42 CON__P15497 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.756 2 3 2 4 3 56.656 56.662 3 3.5315E-36 19743 20211116_3434_TMUAki_TMT10x_P_F6 212.92 187.6 + 44047000 75028000 613120 72213000 49937000 62030000 48091000 60074000 74249000 63891000 61027000 41017000 69998000 4282900 73715000 47871000 63776000 49687000 61292000 73922000 62242000 59280000 10 10 8 10 10 10 10 10 10 10 10 17546000 28710000 151340 27501000 23910000 40742000 21438000 24567000 29470000 25615000 23290000 16338000 26785000 1684900 28339000 22874000 40325000 22124000 25826000 29410000 24974000 22659000 5 5 5 5 5 5 5 5 5 5 5 26501000 46317000 461780 44711000 26026000 21288000 26652000 35507000 44780000 38275000 37736000 24678000 43213000 2598000 45376000 24997000 23451000 27563000 35466000 44512000 37267000 36621000 5 5 3 5 5 5 5 5 5 5 5 5091700000 2492700000 2599000000 3343 42 3126 19189;19190;19191;19192;19193;19194;19195 23085;23086;23087;23088;23089;23090;23091;23092;23093;23094 23089 10 DSGRGDSVSDSGSDALR Unmodified 1679.7347 0.73468378 1902 Q53EL6;Q53EL6-2 PDCD4 Programmed cell death protein 4 yes no 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 28.135 28.017 3 0.0020567 5169 20211116_3428_TMUAki_TMT10x_P_F1 61.815 48.402 17175 29916 1109.3 23051 29763 33538 26531 13382 22595 14643 25959 16000 27889 2634.1 24157 28524 33066 26959 14661 23278 14249 24938 1 1 1 1 1 1 1 1 1 1 1 17175 29916 1109.3 23051 29763 33538 26531 13382 22595 14643 25959 16000 27889 2634.1 24157 28524 33066 26959 14661 23278 14249 24938 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5126000 5126000 0 3344 1902 3127 19196;19197 23095 23095 1 DSGSFVAFQNIPGSELMSSFAK Oxidation (M) 2334.0838 0.083812569 1006 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 1 0 By MS/MS By MS/MS 7.4 0.49 3 2 2 3 77.712 77.743 2;3 1.2039E-13 27369 20211116_3446_TMUAki_TMT10x_S_F7 127.02 107.44 18948000 32254000 400890 24169000 23547000 43212000 26687000 31345000 29039000 30163000 28955000 17645000 30066000 1944000 25512000 22677000 42580000 26979000 32433000 29436000 29508000 27934000 6 6 3 6 6 6 6 6 6 6 6 13022000 21302000 240320 16552000 12913000 34927000 18116000 20427000 20030000 20831000 19775000 12127000 19859000 1278200 17496000 12525000 34122000 18163000 21512000 20284000 20328000 19084000 3 3 2 3 3 3 3 3 3 3 3 5925800 10952000 160570 7617300 10634000 8284100 8571600 10918000 9009200 9332300 9180100 5518400 10207000 665830 8016400 10152000 8457400 8815900 10921000 9152200 9179800 8850500 3 3 1 3 3 3 3 3 3 3 3 6339300000 2431100000 3908100000 3345 1006 3128 19198;19199;19200;19201;19202 23096;23097;23098;23099;23100;23101 23101 1301 6 DSGSFVAFQNIPGSELMSSFAK Unmodified 2318.0889 0.088897947 1006 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 0 0 By MS/MS By matching 8 0 2 1 1 80.014 80.009 3 2.1765E-05 26388 20211116_3436_TMUAki_TMT10x_P_F8 76.693 50.547 8887900 14291000 80556 13846000 8164500 11576000 10108000 4986500 4483400 5916400 8971100 8276100 13333000 801810 14123000 7882200 11785000 9977300 5430400 4966400 5739900 8515200 2 2 2 2 2 2 2 2 2 2 2 8887900 14291000 80556 13846000 8164500 11576000 10108000 4986500 4483400 5916400 8971100 8276100 13333000 801810 14123000 7882200 11785000 9977300 5430400 4966400 5739900 8515200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3295100000 2577300000 717730000 3346 1006 3128 19203;19204 23102;23103 23102 2 DSGTDDQEEEPLERDFDR Unmodified 2151.8829 0.88286415 2281 Q8TDP1 RNASEH2C Ribonuclease H2 subunit C yes yes 0 0 0 1 By MS/MS 1 0 1 1 42.623 42.442 3 1.4888E-17 13031 20211116_3439_TMUAki_TMT10x_S_F1 153.36 142.51 330920 561990 0 865850 203930 235410 163930 520570 626620 497430 587560 308070 525530 19185 852420 194120 285110 182700 514190 615850 486770 568000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 330920 561990 0 865850 203930 235410 163930 520570 626620 497430 587560 308070 525530 19185 852420 194120 285110 182700 514190 615850 486770 568000 1 1 0 1 1 1 1 1 1 1 1 31219000 0 31219000 3347 2281 3129 19205 23104 23104 1 DSHGVAQVR Unmodified 967.48354 0.48354187 1347 P62277 RPS13 40S ribosomal protein S13 yes yes 0 0 0 0 By MS/MS 3 0 1 1 24.793 24.488 3 0.002313 6929 20211116_3441_TMUAki_TMT10x_S_F3 69.812 51.006 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3348 1347 3130 19206 23105 23105 1 DSIFSNLTGQLDYQGFEK Unmodified 2060.9691 0.96910039 992 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 78.807 78.82 3 1.3853E-23 25260 20211116_3434_TMUAki_TMT10x_P_F6 164.01 146.61 23175000 41730000 234940 37020000 27738000 33368000 30779000 22035000 21760000 24360000 29309000 21580000 38921000 2109800 38045000 26681000 33964000 30782000 23045000 22800000 23696000 28039000 6 6 3 6 6 6 6 6 6 6 6 11461000 20146000 234940 17515000 11397000 18940000 13008000 11270000 10680000 12550000 14304000 10673000 18789000 1168200 18075000 10983000 19034000 13039000 11884000 11096000 12204000 13687000 3 3 3 3 3 3 3 3 3 3 3 11715000 21584000 0 19505000 16341000 14428000 17770000 10765000 11080000 11811000 15004000 10907000 20132000 941590 19970000 15698000 14930000 17743000 11161000 11704000 11492000 14353000 3 3 0 3 3 3 3 3 3 3 3 4907400000 2207100000 2700300000 3349 992 3131 19207;19208;19209;19210;19211;19212 23106;23107;23108;23109;23110;23111 23107 6 DSIKLDDDSER Unmodified 1291.5892 0.58918874 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 1 By MS/MS 2 0 1 1 34.539 34.316 3 0.0010713 9198 20211116_3429_TMUAki_TMT10x_P_F2 79.885 55.814 1893400 3082300 23033 2837700 3053500 4120200 2342900 3395700 3222800 2864700 2669400 1763000 2875200 183500 2931400 2910700 4102000 2440900 3473200 3220500 2819700 2592200 2 2 1 2 2 2 2 2 2 2 2 1893400 3082300 23033 2837700 3053500 4120200 2342900 3395700 3222800 2864700 2669400 1763000 2875200 183500 2931400 2910700 4102000 2440900 3473200 3220500 2819700 2592200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 140330000 140330000 0 3350 2116 3132 19213 23112;23113 23112 2 DSIVAELDREMSR Oxidation (M) 1535.725 0.72497071 119 O14579;O14579-3 COPE Coatomer subunit epsilon yes no 0 0 1 1 By MS/MS By MS/MS 2.5 0.957 1 2 2 1 2 4 46.43 46.311 3 0.0021071 12709 20211116_3440_TMUAki_TMT10x_S_F2 70.68 54.147 5789600 9121600 46917 10721000 8565800 9475900 6020700 9630800 9545300 7878100 8455500 5391000 8517400 557090 10806000 8151800 9733700 6349200 9731600 9517800 7766400 8190500 5 5 4 5 5 5 5 5 5 5 5 2713700 3819000 31637 4596700 5796900 6774500 3574900 4462700 4300900 3688100 3873800 2526900 3566500 297650 4667100 5504400 6715200 3764800 4630900 4328500 3633900 3750100 2 2 2 2 2 2 2 2 2 2 2 3076000 5302600 15280 6124700 2768800 2701400 2445800 5168000 5244500 4190000 4581800 2864100 4951000 259440 6138900 2647300 3018600 2584400 5100700 5189300 4132500 4440400 3 3 2 3 3 3 3 3 3 3 3 988080000 468410000 519670000 3351 119 3133 19214;19215;19216;19217;19218;19219 23114;23115;23116;23117;23118 23116 94 5 DSIVAELDREMSR Unmodified 1519.7301 0.73005609 119 O14579;O14579-3 COPE Coatomer subunit epsilon yes no 0 0 0 1 By MS/MS By MS/MS 2.6 0.8 1 4 2 3 61.324 60.977 3 1.2409E-12 21639 20211116_3441_TMUAki_TMT10x_S_F3 133.48 112.7 2431800 3608900 23368 4226400 3207300 4168400 3202400 2011300 1570100 1871500 2839100 2264400 3369800 234260 4267100 3076600 4201600 3198000 2149600 1713800 1833600 2699500 1 1 1 1 1 1 1 1 1 1 1 2431800 3608900 23368 4226400 3207300 4168400 3202400 2011300 1570100 1871500 2839100 2264400 3369800 234260 4267100 3076600 4201600 3198000 2149600 1713800 1833600 2699500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 627900000 499660000 128240000 3352 119 3133 19220;19221;19222;19223;19224 23119;23120;23121;23122 23122 4 DSIVQGFQWGTR Unmodified 1392.6786 0.67861287 1757 Q15029;Q15029-2;Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 By MS/MS 8 0 2 2 62.19 62.195 2 7.8753E-05 18552 20211116_3447_TMUAki_TMT10x_S_F8 89.533 58.963 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3353 1757 3134 19225;19226 23123;23124 23124 2 DSKCEYPAACNALETLLIHR Unmodified 2360.1253 0.12530023 1229 P54886;P54886-2 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes no 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 64.019 64.231 4 1.2407E-12 19763 20211116_3445_TMUAki_TMT10x_S_F6 125.88 114.58 13950000 24019000 437230 24112000 17324000 13774000 15122000 17164000 16087000 16457000 18057000 12992000 22413000 1611300 24437000 16582000 14746000 15484000 17259000 16394000 16102000 17358000 4 4 4 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13950000 24019000 437230 24112000 17324000 13774000 15122000 17164000 16087000 16457000 18057000 12992000 22413000 1611300 24437000 16582000 14746000 15484000 17259000 16394000 16102000 17358000 4 4 4 4 4 4 4 4 4 4 4 2125700000 0 2125700000 3354 1229 3135 19227;19228 23125;23126;23127;23128 23127 4 DSKPSSTPR Unmodified 973.48287 0.48287317 524 P06748;P06748-3 NPM1 Nucleophosmin yes no 0 0 0 1 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 24.472 24.366 3 0.033237 7255 20211116_3441_TMUAki_TMT10x_S_F3 53.124 30.384 990660 1514200 5797.7 1325100 966890 1443400 882720 739690 757100 761960 1029200 922400 1412200 81251 1366900 924950 1447300 895890 788250 785370 743260 984420 3 3 2 3 3 3 3 3 3 3 3 865490 1305000 3849.9 1139100 857010 1322700 743640 679400 690970 688240 913210 805840 1217100 69273 1176600 818740 1321700 758600 723500 713140 671800 874060 2 2 1 2 2 2 2 2 2 2 2 125170 209250 1947.8 185930 109880 120710 139080 60290 66129 73729 116010 116560 195160 11978 190350 106210 125640 137290 64750 72237 71453 110370 1 1 1 1 1 1 1 1 1 1 1 38921000 36343000 2577700 3355 524 3136 19229;19230;19231 23129;23130 23130 2 DSLDPSFTHAMQLLTAEIEK Oxidation (M) 2261.0886 0.088563596 1538 Q07666;Q07666-2;Q07666-3 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 0 0 1 0 By MS/MS 3 1 1 1 2 77.237 77.162 3 0.00594 26625 20211116_3429_TMUAki_TMT10x_P_F2 50.404 39.616 6526100 11662000 0 6283200 8464200 19426000 10375000 11235000 8174700 8304800 8414100 6076300 10861000 548210 6986300 8162600 18795000 10356000 11748000 8421100 8231600 8109400 1 1 0 1 1 1 1 1 1 1 1 6526100 11662000 0 6283200 8464200 19426000 10375000 11235000 8174700 8304800 8414100 6076300 10861000 548210 6986300 8162600 18795000 10356000 11748000 8421100 8231600 8109400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 656610000 656610000 0 3356 1538 3137 19232;19233 23131;23132 23131 2071 2 DSLDPSFTHAMQLLTAEIEK Unmodified 2245.0936 0.093648974 1538 Q07666;Q07666-2;Q07666-3 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.45 1.5 4 3 1 1 2 4 7 80.351 80.342 3;4 1.4123E-25 25877 20211116_3434_TMUAki_TMT10x_P_F6 178.71 159.32 44932000 65667000 161970 76733000 42881000 37010000 45428000 15163000 13899000 19193000 39495000 41832000 61316000 3199600 76904000 41148000 39663000 44970000 16640000 16428000 18579000 37307000 10 10 5 10 10 10 10 10 10 10 10 21393000 29819000 24492 35500000 16221000 19963000 18845000 5704300 5229000 8283500 17220000 19917000 27846000 1441900 35582000 15602000 20975000 18557000 6596600 6341000 7983900 16240000 3 3 1 3 3 3 3 3 3 3 3 23539000 35848000 137480 41233000 26661000 17047000 26583000 9458500 8670000 10909000 22275000 21915000 33470000 1757700 41322000 25546000 18687000 26414000 10043000 10087000 10595000 21067000 7 7 4 7 7 7 7 7 7 7 7 7653900000 2414100000 5239700000 3357 1538 3137 19234;19235;19236;19237;19238;19239;19240;19241;19242;19243;19244 23133;23134;23135;23136;23137;23138;23139;23140;23141;23142;23143 23136 11 DSLIDSLT Unmodified 862.42838 0.42837799 1258 P56537;P56537-2 EIF6 Eukaryotic translation initiation factor 6 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 71.18 70.915 2 0.0018451 25641 20211116_3441_TMUAki_TMT10x_S_F3 137.83 121.68 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3358 1258 3138 19245;19246;19247;19248 23144;23145;23146;23147 23147 4 DSLIFLVDASK Unmodified 1206.6496 0.64960415 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 By MS/MS By MS/MS 5.39 1.16 1 3 6 4 4 9 9 77.68 77.687 2;3 1.0375E-37 25752 20211116_3431_TMUAki_TMT10x_P_F4 280.71 215.46 165950000 279120000 922200 249680000 199880000 298750000 207190000 213290000 209370000 221200000 228010000 154520000 260340000 14641000 257530000 191860000 299400000 209850000 221410000 213560000 215710000 219380000 17 17 12 17 17 17 17 17 17 17 17 92957000 149890000 404940 136810000 105740000 212500000 113310000 120440000 115260000 124800000 126820000 86555000 139810000 8185100 141620000 101600000 209740000 114600000 127230000 117580000 121710000 121980000 10 10 8 10 10 10 10 10 10 10 10 72998000 129240000 517260 112870000 94139000 86258000 93887000 92850000 94109000 96401000 101190000 67969000 120530000 6456100 115900000 90265000 89664000 95254000 94177000 95981000 94004000 97394000 7 7 4 7 7 7 7 7 7 7 7 29998000000 14479000000 15519000000 3359 647 3139 19249;19250;19251;19252;19253;19254;19255;19256;19257;19258;19259;19260;19261;19262;19263;19264;19265;19266 23148;23149;23150;23151;23152;23153;23154;23155;23156;23157;23158;23159;23160;23161;23162;23163;23164;23165;23166 23148 19 DSLIIIDELGR Unmodified 1242.682 0.68196691 1027 P43246;P43246-2 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 73.78 73.688 2 4.2672E-15 26795 20211116_3441_TMUAki_TMT10x_S_F3 175.93 147.19 11577000 18716000 104940 16876000 12434000 18123000 12260000 9925700 10702000 11956000 13149000 10780000 17457000 1069600 17365000 11924000 18201000 12397000 10566000 11043000 11594000 12608000 3 3 3 3 3 3 3 3 3 3 3 7582200 12300000 99830 10768000 7997000 13723000 8092300 6512300 7272100 7865500 8509100 7060500 11472000 727460 11137000 7676300 13636000 8178000 7025700 7477900 7626100 8170100 2 2 2 2 2 2 2 2 2 2 2 3995200 6415900 5111.4 6108700 4436900 4399300 4168100 3413400 3430400 4091000 4639600 3719900 5985600 342180 6228000 4247900 4565000 4219100 3540500 3565000 3967500 4438300 1 1 1 1 1 1 1 1 1 1 1 1457700000 1123500000 334170000 3360 1027 3140 19267;19268;19269;19270 23167;23168;23169;23170 23170 4 DSLLQDGEFSMDLR Oxidation (M) 1640.7352 0.73520105 540 P07737 PFN1 Profilin-1 yes yes 0 0 1 0 By MS/MS By MS/MS 2.5 1.12 4 4 4 4 8 8 62.246 62.055 2;3 3.6956E-19 20949 20211116_3439_TMUAki_TMT10x_S_F1 168 160.09 82687000 143960000 609440 129670000 94755000 145860000 99493000 121870000 125100000 119760000 115980000 76986000 134270000 6340500 133540000 90950000 147060000 101470000 125060000 125830000 117050000 112160000 20 20 10 20 20 20 20 20 20 20 20 35252000 57853000 210620 53733000 41383000 83512000 44724000 49988000 50426000 48685000 46790000 32823000 53968000 2647000 55553000 39761000 82486000 45367000 52477000 50921000 47602000 45249000 9 9 5 9 9 9 9 9 9 9 9 47435000 86102000 398820 75939000 53371000 62352000 54769000 71882000 74676000 71072000 69188000 44164000 80304000 3693600 77985000 51189000 64572000 56098000 72580000 74904000 69446000 66913000 11 11 5 11 11 11 11 11 11 11 11 88305000000 47363000000 40943000000 3361 540 3141 19271;19272;19273;19274;19275;19276;19277;19278;19279;19280;19281;19282;19283;19284;19285;19286 23171;23172;23173;23174;23175;23176;23177;23178;23179;23180;23181;23182;23183;23184;23185;23186;23187;23188;23189;23190 23181 471 20 DSLLQDGEFSMDLR Unmodified 1624.7403 0.74028642 540 P07737 PFN1 Profilin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 4 4 4 4 8 8 72.185 72.04 2;3 1.6119E-99 22928 20211116_3428_TMUAki_TMT10x_P_F1 363.85 313.04 165990000 270890000 848540 247740000 189620000 214200000 206590000 147030000 115810000 148870000 192040000 154540000 252680000 12163000 253870000 182150000 218770000 205850000 152930000 124490000 145320000 182900000 22 22 7 22 22 22 22 22 22 22 22 63706000 104680000 453350 93201000 61512000 107870000 79499000 60090000 48451000 60297000 73230000 59314000 97631000 4964100 96110000 59414000 107910000 78738000 63513000 51529000 58880000 69875000 10 10 4 10 10 10 10 10 10 10 10 102280000 166210000 395190 154530000 128110000 106330000 127090000 86937000 67359000 88574000 118810000 95228000 155050000 7199200 157760000 122730000 110860000 127120000 89419000 72966000 86438000 113020000 12 12 3 12 12 12 12 12 12 12 12 30740000000 16725000000 14015000000 3362 540 3141 19287;19288;19289;19290;19291;19292;19293;19294;19295;19296;19297;19298;19299;19300;19301;19302 23191;23192;23193;23194;23195;23196;23197;23198;23199;23200;23201;23202;23203;23204;23205;23206;23207;23208;23209;23210;23211;23212 23191 22 DSLPVCPVDASGCFTTEVTDFAGQYVK Unmodified 2962.3365 0.3364748 1002 P41252 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 79.698 79.704 3 1.7037E-12 25629 20211116_3434_TMUAki_TMT10x_P_F6 106.45 95.138 1974200 3059800 0 2898400 2291800 2945300 2732300 1951900 1854000 2032400 2609000 1837800 2854600 125530 2968900 2205700 2975300 2721200 2037100 1951300 1981600 2493400 2 2 0 2 2 2 2 2 2 2 2 999450 1484700 0 1376400 1070400 1892600 1416000 1088000 1025300 971320 1300500 930500 1385000 72254 1419500 1034300 1878100 1406100 1143400 1069900 953450 1246000 1 1 0 1 1 1 1 1 1 1 1 974720 1575200 0 1522000 1221300 1052700 1316300 863860 828690 1061100 1308500 907320 1469600 53275 1549400 1171400 1097200 1315100 893750 881410 1028200 1247400 1 1 0 1 1 1 1 1 1 1 1 2166500000 1030200000 1136300000 3363 1002 3142 19303;19304;19305 23213;23214 23213 2 DSLSPGQERPYSTVR Unmodified 1690.8275 0.82746195 2173 Q8IZL8 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 32.831 32.817 3 4.6382E-05 7492 20211116_3431_TMUAki_TMT10x_P_F4 94.78 75.176 447160 675790 14478 1058500 2661200 1377100 744540 705400 883200 443160 847180 416460 632020 81575 1057500 2504400 1368100 859730 743250 891160 443610 818360 1 1 1 1 1 1 1 1 1 1 1 447160 675790 14478 1058500 2661200 1377100 744540 705400 883200 443160 847180 416460 632020 81575 1057500 2504400 1368100 859730 743250 891160 443610 818360 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 119020000 119020000 0 3364 2173 3143 19306;19307 23215 23215 1 DSLTLVFVETK Unmodified 1250.6758 0.6758189 104 O00571;O00571-2 DDX3X ATP-dependent RNA helicase DDX3X yes no 0 0 0 0 By MS/MS By matching 4.33 0.471 2 1 2 1 73.935 73.959 2;3 2.1961E-06 24247 20211116_3431_TMUAki_TMT10x_P_F4 128.81 102.43 4088300 6731200 15070 6420600 4393600 8027900 5282100 3716400 4218100 4292200 4956200 3806700 6279700 357270 6596000 4236100 7982300 5278500 4013400 4364000 4168300 4758200 1 1 1 1 1 1 1 1 1 1 1 4088300 6731200 15070 6420600 4393600 8027900 5282100 3716400 4218100 4292200 4956200 3806700 6279700 357270 6596000 4236100 7982300 5278500 4013400 4364000 4168300 4758200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 645770000 403240000 242540000 3365 104 3144 19308;19309;19310 23216;23217 23216 2 DSLYKPILR Unmodified 1103.6339 0.63389451 1728 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 0 0 0 1 By MS/MS 8 0 1 1 45.851 45.987 3 0.09945 12490 20211116_3436_TMUAki_TMT10x_P_F8 36.528 10.483 1325800 1923800 15843 2195900 3065100 3112600 1692700 1860900 2012900 1664700 1857200 1234600 1796200 149040 2234700 2905500 3086200 1798700 1949300 2028200 1633900 1796400 1 1 1 1 1 1 1 1 1 1 1 1325800 1923800 15843 2195900 3065100 3112600 1692700 1860900 2012900 1664700 1857200 1234600 1796200 149040 2234700 2905500 3086200 1798700 1949300 2028200 1633900 1796400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 92017000 92017000 0 3366 1728 3145 19311 23218 23218 1 DSLYVDGDCTMDIR Oxidation (M) 1674.6865 0.68653629 920;921 P35080;P35080-2 PFN2 Profilin-2 no no 0 0 1 0 By MS/MS By MS/MS 2 0.816 4 4 4 6 6 46.736 46.583 2;3 3.5452E-14 12847 20211116_3440_TMUAki_TMT10x_S_F2 158.08 135.17 21266000 34497000 145650 38167000 38347000 42634000 25496000 34157000 33333000 28705000 33499000 19800000 32203000 1951800 38745000 36443000 42967000 26776000 34993000 33573000 28259000 32310000 14 14 5 14 14 14 14 14 14 14 14 12858000 20222000 31854 22381000 30342000 35378000 19209000 19396000 19339000 16219000 19752000 11971000 18877000 1177200 22874000 28805000 34880000 20070000 20432000 19683000 15971000 19041000 7 7 1 7 7 7 7 7 7 7 7 8407900 14275000 113800 15786000 8004700 7256200 6287200 14761000 13994000 12486000 13747000 7829200 13326000 774590 15870000 7637500 8086900 6705700 14561000 13890000 12288000 13269000 7 7 4 7 7 7 7 7 7 7 7 2811600000 1846000000 965630000 3367 920;921 3146 19312;19313;19314;19315;19316;19317;19318;19319;19320;19321;19322;19323 23219;23220;23221;23222;23223;23224;23225;23226;23227;23228;23229;23230;23231;23232 23229 1160 14 DSLYVDGDCTMDIR Unmodified 1658.6916 0.69162167 920;921 P35080;P35080-2 PFN2 Profilin-2 no no 0 0 0 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 55.726 55.489 2;3 3.4668E-76 18332 20211116_3430_TMUAki_TMT10x_P_F3 304.57 269.88 7117600 12134000 56806 13340000 7499600 5435600 6571500 6017800 5393800 6428100 8551500 6627300 11327000 604140 13406000 7168200 6038100 6677800 6101300 5650800 6261100 8151500 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7117600 12134000 56806 13340000 7499600 5435600 6571500 6017800 5393800 6428100 8551500 6627300 11327000 604140 13406000 7168200 6038100 6677800 6101300 5650800 6261100 8151500 4 4 2 4 4 4 4 4 4 4 4 791990000 0 791990000 3368 920;921 3146 19324;19325;19326;19327;19328 23233;23234;23235;23236;23237;23238 23234 6 DSNFAGDLVR Unmodified 1092.52 0.51998696 2125 Q86XP3;Q86XP3-2 DDX42 ATP-dependent RNA helicase DDX42 yes no 0 0 0 0 By MS/MS 3 0 1 1 45.385 45.403 2 2.3236E-08 14110 20211116_3430_TMUAki_TMT10x_P_F3 125.74 81.755 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3369 2125 3147 19329 23239 23239 1 DSNNLCLHFNPR Unmodified 1485.6783 0.67829529 572 P09382 LGALS1 Galectin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 2 3 39.255 39.358 3 5.8229E-07 9435 20211116_3444_TMUAki_TMT10x_S_F5 120.57 105.97 5114700 8483600 31217 9055100 7759300 7351800 5713200 6740000 7083200 5866300 7497900 4762400 7918300 478820 9171800 7389700 7580800 5944600 6857500 7160700 5765300 7220100 7 7 5 7 7 7 7 7 7 7 7 2240900 3587200 576.72 3950700 4980800 5090400 3071300 3059400 3209000 2721600 3232500 2086500 3348600 213750 4021700 4727100 5069800 3219500 3203000 3259400 2672000 3117500 2 2 1 2 2 2 2 2 2 2 2 2873700 4896500 30640 5104300 2778600 2261400 2641900 3680600 3874200 3144700 4265500 2676000 4569700 265070 5150100 2662600 2511000 2725100 3654500 3901300 3093300 4102600 5 5 4 5 5 5 5 5 5 5 5 505320000 286900000 218420000 3370 572 3148 19330;19331;19332;19333;19334 23240;23241;23242;23243;23244;23245;23246 23244 7 DSNPDEIEIDFETLKPTTLR Unmodified 2332.1434 0.14343594 1766 Q15059 BRD3 Bromodomain-containing protein 3 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 75.941 75.827 3 2.0118E-24 27589 20211116_3441_TMUAki_TMT10x_S_F3 168.14 158.96 3592800 6362600 71706 5646000 4581400 4827600 5038300 3801200 3652100 4149700 4762100 3345800 5934300 378540 5798200 4408700 4945400 5043800 3927000 3815400 4038400 4559500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3592800 6362600 71706 5646000 4581400 4827600 5038300 3801200 3652100 4149700 4762100 3345800 5934300 378540 5798200 4408700 4945400 5043800 3927000 3815400 4038400 4559500 2 2 2 2 2 2 2 2 2 2 2 937720000 189110000 748620000 3371 1766 3149 19335;19336;19337;19338 23247;23248;23249 23248 3 DSNSLAYYNMANGAVIHLALK Oxidation (M) 2280.1209 0.12086678 1810 Q15459;Q15459-2 SF3A1 Splicing factor 3A subunit 1 yes no 0 0 1 0 By MS/MS 8 0 1 1 67.607 67.728 3 0.0012693 21341 20211116_3436_TMUAki_TMT10x_P_F8 63.69 46.408 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3372 1810 3150 19339 23250 23250 2434 1 DSNTILLPSNPGDVTSMVAQAMGVYGALTK Oxidation (M) 3065.5049 0.50493711 3148 Q9UJZ1;Q9UJZ1-2 STOML2 Stomatin-like protein 2, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 2.83 2.34 1 4 1 4 2 81.211 81.205 3;4 3.5653E-10 26914 20211116_3436_TMUAki_TMT10x_P_F8 86.261 72.669 4895400 7739800 168620 7835400 5405800 5917900 5968200 2898300 2267200 3836400 5469000 4559400 7222400 564890 7958000 5207300 6079200 5909800 3127300 2582000 3708200 5176600 5 5 4 5 5 5 5 5 5 5 5 2772600 4175600 29380 4210700 2252400 3647100 2768400 1475000 1328100 1920300 2793900 2581700 3896400 244700 4284700 2174100 3701300 2736600 1622600 1466100 1857100 2649800 3 3 2 3 3 3 3 3 3 3 3 2122800 3564200 139240 3624700 3153300 2270800 3199800 1423300 939100 1916100 2675100 1977600 3326000 320200 3673300 3033200 2377800 3173300 1504600 1115900 1851000 2526800 2 2 2 2 2 2 2 2 2 2 2 5390500000 3601500000 1788900000 3373 3148 3151 19340;19341;19342;19343;19344;19345 23251;23252;23253;23254;23255 23253 3161 5 DSNYHLLMSVQESLER Oxidation (M) 1935.8996 0.89964061 463 P00367;P00367-3;P00367-2 GLUD1 Glutamate dehydrogenase 1, mitochondrial yes no 0 0 1 0 By MS/MS 4 0 1 1 59.672 59.802 3 0.047431 18390 20211116_3431_TMUAki_TMT10x_P_F4 41.257 29.643 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3374 463 3152 19346 23256 23256 345 1 DSPCQLEALKLESCGVTSDNCR Unmodified 2538.1149 0.11487148 651 P13489 RNH1 Ribonuclease inhibitor yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 56.031 56.206 3 6.359E-08 16930 20211116_3431_TMUAki_TMT10x_P_F4 89.365 82.089 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3375 651 3153 19347;19348 23257;23258 23257 2 DSPFGLSFVR Unmodified 1123.5662 0.56620887 726 P18887 XRCC1 DNA repair protein XRCC1 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 3 1 2 65.023 65.546 2 5.7276E-05 21647 20211116_3435_TMUAki_TMT10x_P_F7 131.22 86.778 5250300 9028600 136800 8938700 6168900 10974000 6398800 6747000 6359800 6079900 6240400 4889600 8424300 575650 9155700 5929100 10959000 6477400 7053300 6467500 5965500 6023600 1 1 1 1 1 1 1 1 1 1 1 5250300 9028600 136800 8938700 6168900 10974000 6398800 6747000 6359800 6079900 6240400 4889600 8424300 575650 9155700 5929100 10959000 6477400 7053300 6467500 5965500 6023600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1141900000 804560000 337310000 3376 726 3154 19349;19350;19351 23259;23260 23259 2 DSPIRAEMPGNLQHYGR Oxidation (M) 1955.9272 0.92719277 1460 P86791;P86790 CCZ1;CCZ1B Vacuolar fusion protein CCZ1 homolog;Vacuolar fusion protein CCZ1 homolog B yes no 0 0 1 1 By MS/MS 5.5 0.5 1 1 2 32.611 32.568 4 0.044022 7828 20211116_3433_TMUAki_TMT10x_P_F5 40.186 27.804 353900 546800 0 638500 934690 876020 569980 447300 511090 417920 502320 329470 510560 31137 648450 886640 868150 595400 475540 522210 409380 484840 1 1 0 1 1 1 1 1 1 1 1 353900 546800 0 638500 934690 876020 569980 447300 511090 417920 502320 329470 510560 31137 648450 886640 868150 595400 475540 522210 409380 484840 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31687000 31687000 0 3377 1460 3155 19352;19353 23261 23261 1961 1 DSPLLLQQISAMR Unmodified 1470.7864 0.78644876 1694 Q14203;Q14203-6;Q14203-3;Q14203-4;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 By MS/MS 8 0 1 1 70.661 70.489 2 0.078726 21979 20211116_3447_TMUAki_TMT10x_S_F8 49.28 29.283 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3378 1694 3156 19354 23262 23262 1 DSPSVWAAVPGK Unmodified 1212.6139 0.61388734 540 P07737;CON__P02584 PFN1 Profilin-1 yes no 0 0 0 0 By MS/MS By MS/MS 6.09 0.793 3 4 4 6 5 56.741 57.043 2;3 3.7447E-12 16671 20211116_3445_TMUAki_TMT10x_S_F6 175.93 149.55 133370000 202300000 684170 319800000 215440000 158940000 148280000 74281000 77985000 84571000 158420000 124180000 189210000 12211000 315540000 204890000 169940000 151740000 80104000 85267000 82173000 150330000 20 20 10 20 20 20 20 20 20 20 20 72428000 108630000 245170 167660000 180680000 130100000 112020000 45125000 48007000 49181000 85109000 67437000 101580000 7455000 166310000 171510000 132940000 115240000 50290000 52957000 47865000 80953000 12 12 6 12 12 12 12 12 12 12 12 60939000 93674000 439000 152140000 34764000 28841000 36255000 29155000 29979000 35390000 73310000 56741000 87626000 4755900 149230000 33376000 36994000 36503000 29814000 32310000 34307000 69378000 8 8 4 8 8 8 8 8 8 8 8 10683000000 6107600000 4575200000 3379 540 3157 19355;19356;19357;19358;19359;19360;19361;19362;19363;19364;19365 23263;23264;23265;23266;23267;23268;23269;23270;23271;23272;23273;23274;23275;23276;23277;23278;23279;23280;23281;23282 23276 20 DSPTQEREELFIQK Unmodified 1718.8475 0.84752869 1731 Q14738 PPP2R5D Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 46.218 46.109 3 1.0332E-20 14014 20211116_3429_TMUAki_TMT10x_P_F2 179.65 155.09 7407000 11060000 59182 14316000 13841000 13950000 7879200 8928400 8845400 7761700 9825800 6897000 10332000 749370 14369000 13125000 14121000 8333800 9296300 8991200 7628500 9448200 4 4 1 4 4 4 4 4 4 4 4 5366800 7774100 0 9681200 12642000 12608000 6731000 6103300 6115100 5274000 6883800 4996900 7261200 536850 9785500 11972000 12518000 7117500 6508900 6275300 5185100 6616800 3 3 0 3 3 3 3 3 3 3 3 2040200 3285900 59182 4635000 1199500 1341800 1148200 2825100 2730300 2487600 2942000 1900100 3071200 212530 4583900 1152500 1603400 1216300 2787400 2715900 2443400 2831500 1 1 1 1 1 1 1 1 1 1 1 570190000 312960000 257240000 3380 1731 3158 19366;19367;19368;19369 23283;23284;23285;23286 23283 4 DSQLYAVDYETLTRPFSGR Unmodified 2217.0702 0.070211415 1443 P82930 MRPS34 28S ribosomal protein S34, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 69.503 69.863 3 2.1503E-17 23969 20211116_3446_TMUAki_TMT10x_S_F7 142.31 123.27 15501000 26327000 357750 25204000 16279000 18510000 17190000 10145000 10171000 11328000 16444000 14436000 24561000 1629500 25691000 15654000 19082000 17171000 10772000 10877000 11015000 15669000 3 3 3 3 3 3 3 3 3 3 3 5875000 9746300 191910 10154000 4310500 8187000 5687400 4380300 4357500 5151100 5989700 5471600 9095900 644020 10301000 4179400 8376200 5655800 4668800 4549100 4999100 5727500 1 1 1 1 1 1 1 1 1 1 1 9626200 16580000 165840 15050000 11969000 10323000 11502000 5764200 5813200 6176700 10454000 8964200 15465000 985440 15390000 11475000 10706000 11515000 6103100 6327600 6015500 9941200 2 2 2 2 2 2 2 2 2 2 2 2388400000 1200400000 1188000000 3381 1443 3159 19370;19371 23287;23288;23289 23289 3 DSQVVQVVLDGLK Unmodified 1398.7718 0.77184455 98 O00505 KPNA3 Importin subunit alpha-4 yes yes 0 0 0 0 By MS/MS 6 0 1 1 78.504 78.481 2 1.3374E-05 25115 20211116_3434_TMUAki_TMT10x_P_F6 98.902 69.944 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3382 98 3160 19372 23290 23290 1 DSSLFDIFTLSCNLLK Unmodified 1871.9339 0.93390085 3132 Q9UIA9 XPO7 Exportin-7 yes yes 0 0 0 0 By MS/MS By matching 2 0 2 1 1 83.154 83.15 3 1.2153E-10 29041 20211116_3429_TMUAki_TMT10x_P_F2 126.48 104.64 354790 568780 0 516990 364820 911310 412800 541760 418120 496520 421620 330330 530540 27885 536970 350910 895750 416370 568120 425260 486790 406610 1 1 0 1 1 1 1 1 1 1 1 354790 568780 0 516990 364820 911310 412800 541760 418120 496520 421620 330330 530540 27885 536970 350910 895750 416370 568120 425260 486790 406610 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 114310000 41014000 73295000 3383 3132 3161 19373;19374 23291 23291 1 DSSQILSASFDQTIR Unmodified 1666.8162 0.81622856 1881 Q2TAY7;Q2TAY7-2 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 4.8 0.748 4 4 2 4 6 61.438 61.527 2;3 1.5072E-72 18226 20211116_3444_TMUAki_TMT10x_S_F5 331.44 294.99 31350000 56171000 330020 53340000 34555000 48364000 35593000 33132000 31458000 30944000 38934000 29190000 52403000 2734900 54541000 33165000 49235000 35921000 34390000 32450000 30312000 37327000 8 8 3 8 8 8 8 8 8 8 8 19543000 36198000 40357 33056000 22380000 37166000 23965000 20582000 19857000 18739000 23826000 18196000 33765000 1534500 34006000 21491000 37236000 24099000 21708000 20521000 18378000 22861000 5 5 2 5 5 5 5 5 5 5 5 11807000 19973000 289660 20283000 12175000 11199000 11627000 12550000 11602000 12204000 15108000 10995000 18638000 1200400 20535000 11674000 11999000 11822000 12682000 11928000 11934000 14465000 3 3 1 3 3 3 3 3 3 3 3 3599400000 2044500000 1555000000 3384 1881 3162 19375;19376;19377;19378;19379;19380;19381;19382;19383;19384 23292;23293;23294;23295;23296;23297;23298;23299;23300;23301;23302 23300 11 DSSTCPGDYVLSVSENSR Unmodified 1971.848 0.84799897 1046 P46109 CRKL Crk-like protein yes yes 0 0 0 0 By MS/MS By MS/MS 2.8 0.748 4 4 2 5 5 53.517 53.346 2;3 5.1653E-151 17394 20211116_3430_TMUAki_TMT10x_P_F3 403.16 387.62 25542000 43368000 251090 43376000 34124000 42989000 28927000 30200000 28620000 28405000 32681000 23782000 40467000 2200200 44245000 32587000 43531000 29604000 31297000 29273000 27816000 31401000 14 14 8 14 14 14 14 14 14 14 14 16011000 26304000 97154 26478000 24418000 33920000 20433000 17026000 16972000 16802000 19502000 14907000 24545000 1288500 27111000 23303000 33717000 20827000 18157000 17507000 16419000 18734000 7 7 3 7 7 7 7 7 7 7 7 9530600 17063000 153940 16898000 9706000 9068900 8493900 13174000 11649000 11604000 13179000 8874900 15921000 911700 17133000 9283800 9814000 8776800 13140000 11767000 11397000 12666000 7 7 5 7 7 7 7 7 7 7 7 3219300000 1754600000 1464700000 3385 1046 3163 19385;19386;19387;19388;19389;19390;19391;19392;19393;19394 23303;23304;23305;23306;23307;23308;23309;23310;23311;23312;23313;23314;23315;23316 23305 14 DSSTSPGDYVLSVSENSR Unmodified 1898.8494 0.84937918 1044;1045 P46108;P46108-2 CRK Adapter molecule crk no no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 54.05 53.773 3 0.00010663 18666 20211116_3441_TMUAki_TMT10x_S_F3 74.618 67.499 5106300 8407000 110640 9951100 9815000 8899300 7134800 5256300 4791100 5275300 7303700 4755300 7850400 592410 10027000 9350400 9049000 7304700 5528600 5065900 5151300 6967800 2 2 2 2 2 2 2 2 2 2 2 2905800 5012000 100830 5582500 7665100 7372900 5434800 3248200 2938600 3316800 4346900 2706300 4678900 401530 5681500 7299700 7307900 5552100 3512700 3148700 3236600 4149700 1 1 1 1 1 1 1 1 1 1 1 2200600 3394900 9811.7 4368600 2149900 1526400 1700000 2008100 1852500 1958400 2956800 2049000 3171500 190880 4345400 2050700 1741200 1752700 2015900 1917100 1914800 2818100 1 1 1 1 1 1 1 1 1 1 1 582350000 241260000 341090000 3386 1044;1045 3164 19395;19396 23317;23318 23318 2 DSTEVEISTGER Unmodified 1321.5998 0.59975342 2525 Q96N67;Q96N67-3;Q96N67-2;Q96N67-4;Q96N67-5;Q96N67-6;Q96N67-7 DOCK7 Dedicator of cytokinesis protein 7 yes no 0 0 0 0 By MS/MS 1 0 1 1 34.696 34.696 2 0.0024174 7845 20211116_3428_TMUAki_TMT10x_P_F1 74.094 45.925 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3387 2525 3165 19397 23319 23319 1 DSTLIMQLLR Unmodified 1188.6536 0.65364367 1342;1395;825;895;1515;1331;896 P27348;P31946;P31946-2;P63104;P63104-2;P31947;P31947-2;P61981;P62258;P62258-2;Q04917 YWHAQ;YWHAB;YWHAZ;SFN;YWHAG;YWHAE;YWHAH 14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein sigma;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein epsilon;14-3-3 protein eta no no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 78.094 78.07 2 4.2817E-25 25486 20211116_3428_TMUAki_TMT10x_P_F1 257.96 176.77 156360000 228050000 215810 344200000 104050000 116080000 140670000 47047000 41734000 54083000 133060000 145580000 213230000 10008000 339530000 100620000 130770000 137710000 51529000 50028000 52531000 125530000 6 6 3 6 6 6 6 6 6 6 6 65121000 92516000 18869 145190000 31091000 63030000 44691000 16665000 15619000 21031000 54532000 60629000 86524000 3039100 143170000 30106000 68237000 43721000 19415000 18542000 20360000 51401000 3 3 1 3 3 3 3 3 3 3 3 91240000 135530000 196940 199010000 72958000 53046000 95982000 30382000 26116000 33052000 78531000 84951000 126700000 6968400 196360000 70513000 62534000 93992000 32114000 31485000 32170000 74133000 3 3 2 3 3 3 3 3 3 3 3 13807000000 7705900000 6101100000 3388 825;895;1395;896;1331;1342;1515 3166 19398;19399;19400;19401 23320;23321;23322;23323;23324;23325 23320 6 DSTLIMQLLR Oxidation (M) 1204.6486 0.64855829 1342;1395;825;895;1515;1331;896 P27348;P31946;P31946-2;P63104;P63104-2;P31947;P31947-2;P61981;P62258;P62258-2;Q04917 YWHAQ;YWHAB;YWHAZ;SFN;YWHAG;YWHAE;YWHAH 14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein sigma;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein epsilon;14-3-3 protein eta no no 0 0 1 0 By MS/MS By MS/MS 6 2.12 1 1 2 2 2 4 4 71.949 71.996 2 0.00037503 23117 20211116_3436_TMUAki_TMT10x_P_F8 115.86 82.503 66512000 106160000 378760 118970000 68938000 97070000 70013000 70819000 73798000 73376000 80644000 61931000 99110000 5772600 120140000 66142000 99650000 71078000 73405000 75154000 71557000 77583000 10 10 8 10 10 10 10 10 10 10 10 35583000 55466000 204870 62717000 36541000 65818000 36032000 37424000 38116000 38403000 42061000 33132000 51783000 3025800 63516000 35029000 66222000 36640000 39512000 38826000 37466000 40452000 6 6 4 6 6 6 6 6 6 6 6 30929000 50697000 173890 56256000 32396000 31252000 33981000 33395000 35682000 34972000 38584000 28799000 47327000 2746800 56624000 31113000 33428000 34439000 33893000 36329000 34091000 37131000 4 4 4 4 4 4 4 4 4 4 4 14749000000 7589000000 7160300000 3389 825;895;1395;896;1331;1342;1515 3166 19402;19403;19404;19405;19406;19407;19408;19409 23326;23327;23328;23329;23330;23331;23332;23333;23334;23335;23336 23331 991 11 DSTVAVVVYDITNVNSFQQTTK Unmodified 2428.2122 0.21218421 742 P20340 RAB6A Ras-related protein Rab-6A yes yes 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 79.684 79.7 3;4 1.1008E-07 28144 20211116_3446_TMUAki_TMT10x_S_F7 96.131 47.476 11618000 17294000 187000 16873000 16956000 11624000 14287000 10440000 9878500 10219000 12920000 10819000 16135000 1158800 17164000 16199000 12139000 14495000 10668000 10351000 9989400 12369000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11618000 17294000 187000 16873000 16956000 11624000 14287000 10440000 9878500 10219000 12920000 10819000 16135000 1158800 17164000 16199000 12139000 14495000 10668000 10351000 9989400 12369000 2 2 1 2 2 2 2 2 2 2 2 1771500000 0 1771500000 3390 742 3167 19410;19411 23337;23338 23338 2 DSVFLSCSEDNR Unmodified 1427.5987 0.59870757 2627 Q9BQA1;Q9BQA1-2 WDR77 Methylosome protein 50 yes no 0 0 0 0 By MS/MS 3 0 1 1 44.477 44.142 2 3.8721E-08 14733 20211116_3441_TMUAki_TMT10x_S_F3 122.77 100.63 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3391 2627 3168 19412 23339 23339 1 DSVPMGSPAFLLSLFDGGTR Oxidation (M) 2082.0092 0.0091910629 2773 Q9H0E9-2 BRD8 Bromodomain-containing protein 8 yes yes 0 0 1 0 By MS/MS 8 0 1 1 81.115 81.112 3 9.486E-05 26276 20211116_3447_TMUAki_TMT10x_S_F8 66.582 55.923 1253500 2216500 0 2025000 1585400 1627900 1853700 1390600 1291100 1520200 1779400 1167000 2067500 100130 2073400 1526300 1677600 1848800 1429700 1355400 1479300 1701400 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1253500 2216500 0 2025000 1585400 1627900 1853700 1390600 1291100 1520200 1779400 1167000 2067500 100130 2073400 1526300 1677600 1848800 1429700 1355400 1479300 1701400 2 2 0 2 2 2 2 2 2 2 2 221610000 0 221610000 3392 2773 3169 19413 23340;23341 23341 2943 2 DSVVAGFQWATK Unmodified 1307.651 0.65100113 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 67.317 67.196 2 1.2701E-15 21144 20211116_3436_TMUAki_TMT10x_P_F8 174.4 146.39 3119900 5361900 102990 6592000 2763100 2376600 3270600 2411800 2266300 2339200 3706200 2905700 5007800 349650 6575000 2668400 2681900 3259900 2448200 2400600 2287500 3530700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3119900 5361900 102990 6592000 2763100 2376600 3270600 2411800 2266300 2339200 3706200 2905700 5007800 349650 6575000 2668400 2681900 3259900 2448200 2400600 2287500 3530700 1 1 1 1 1 1 1 1 1 1 1 430030000 0 430030000 3393 653 3170 19414;19415;19416 23342;23343;23344 23343 3 DSVVLNFNPFMAFNPDPK Oxidation (M) 2066.9772 0.97716265 789 P23786 CPT2 Carnitine O-palmitoyltransferase 2, mitochondrial yes yes 0 0 1 0 By MS/MS 8 0 1 1 80.283 80.269 3 0.0027712 25906 20211116_3447_TMUAki_TMT10x_S_F8 62.203 52.453 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3394 789 3171 19417 23345 23345 932 1 DSYGGPPR Unmodified 847.38243 0.38243085 969 P38159;P38159-2;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 28.51 28.254 2 0.040203 8423 20211116_3441_TMUAki_TMT10x_S_F3 60.895 27.099 272320 469240 11566 403050 328860 434390 297250 272660 321470 292250 393670 253620 437600 31219 416320 315050 436960 303910 285970 328550 284620 377520 2 2 1 2 2 2 2 2 2 2 2 168680 277300 11566 250600 191770 322500 163070 173650 200810 192030 243510 157150 258650 25088 258610 183860 320760 168080 184620 204160 186790 233590 1 1 1 1 1 1 1 1 1 1 1 103640 191940 0 152450 137090 111890 134170 99017 120660 100220 150160 96472 178950 6131.3 157710 131180 116200 135830 101360 124390 97831 143940 1 1 0 1 1 1 1 1 1 1 1 11507000 3327000 8179700 3395 969 3172 19418;19419 23346;23347 23347 2 DSYGGPPRREPLPSR Unmodified 1682.8489 0.84886609 969 P38159;P38159-2;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 yes no 0 0 0 2 By MS/MS 4.5 0.5 2 2 4 28.941 28.928 3;4 1.8082E-23 6268 20211116_3433_TMUAki_TMT10x_P_F5 179.97 150.06 1150200 1723200 2003.4 1666400 2871500 2439200 1479200 1421300 1629700 1211000 1655500 1070800 1607700 101160 1715600 2717100 2414300 1577900 1490100 1652300 1191300 1596200 5 5 2 5 5 5 5 5 5 5 5 1150200 1723200 2003.4 1666400 2871500 2439200 1479200 1421300 1629700 1211000 1655500 1070800 1607700 101160 1715600 2717100 2414300 1577900 1490100 1652300 1191300 1596200 5 5 2 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 127100000 127100000 0 3396 969 3173 19420;19421;19422;19423 23348;23349;23350;23351;23352 23351 5 DSYLILETLPTEYDSR Unmodified 1913.9258 0.92583859 711 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 0 0 By MS/MS By MS/MS 1.57 0.728 4 2 1 2 5 77.794 77.766 2;3 1.5104E-35 25376 20211116_3428_TMUAki_TMT10x_P_F1 212.59 195.11 6958100 12546000 187360 11413000 8848700 9722600 9194100 7085700 6774500 7558800 8986800 6479800 11703000 742490 11698000 8502200 9949800 9233000 7351500 7076300 7362800 8600700 3 3 2 3 3 3 3 3 3 3 3 2217900 3326800 25696 3333200 1998000 3677500 2255700 1845200 1853500 2018300 2499800 2065300 3104300 204750 3405100 1923800 3683900 2262100 1973700 1926200 1964000 2391400 1 1 1 1 1 1 1 1 1 1 1 4740300 9219400 161670 8080100 6850700 6045100 6938500 5240500 4921000 5540500 6487000 4414600 8598400 537740 8293100 6578400 6265800 6970900 5377800 5150100 5398800 6209300 2 2 1 2 2 2 2 2 2 2 2 3012700000 1093700000 1919000000 3397 711 3174 19424;19425;19426;19427;19428;19429;19430 23353;23354;23355;23356 23353 4 DSYVGDEAQSK Unmodified 1197.515 0.51496116 1276;1406;1414 P60709;P63261;P68133;P68032;P62736;P63267 ACTB;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle no no 0 0 0 0 By MS/MS By MS/MS 2.4 1.28 3 3 2 1 1 4 6 34.504 34.411 2;3 1.7574E-73 9277 20211116_3429_TMUAki_TMT10x_P_F2 353.13 297.67 10365000 17557000 120550 15544000 11485000 11437000 10527000 5581700 6561000 6156100 10582000 9650700 16375000 882590 15938000 10989000 11773000 10605000 5987700 6990900 5988700 10083000 7 7 3 7 7 7 7 7 7 7 7 5058100 8037200 27268 7244900 6055300 7167200 4818700 2857500 3374800 2964700 4862300 4709200 7496600 385150 7445800 5771900 7209400 4907800 3126000 3549300 2891100 4644500 3 3 2 3 3 3 3 3 3 3 3 5306700 9519400 93286 8299300 5429600 4269600 5707900 2724200 3186200 3191400 5719200 4941500 8878000 497440 8492600 5216800 4563400 5697100 2861700 3441600 3097700 5438700 4 4 1 4 4 4 4 4 4 4 4 709550000 393460000 316090000 3398 1276;1406;1414 3175 19431;19432;19433;19434;19435;19436;19437;19438;19439;19440 23357;23358;23359;23360;23361;23362;23363;23364;23365 23359 9 DSYVGDEAQSKR Unmodified 1353.6161 0.61607219 1276;1406;1414 P60709;P63261;P68133;P68032;P62736;P63267 ACTB;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle no no 0 0 0 1 By MS/MS By MS/MS 2.67 1.49 2 1 1 1 1 4 2 30.862 30.785 3 1.1407E-16 6318 20211116_3428_TMUAki_TMT10x_P_F1 205.31 191.05 3945400 7686100 43592 3884700 6598800 11094000 6609300 6169900 7256800 6402400 6618600 3673900 7157800 403170 4339300 6330000 10747000 6723600 6528600 7331500 6243300 6404500 6 6 5 6 6 6 6 6 6 6 6 2765400 5290300 30814 2754300 4239200 8453900 4242700 4143900 5026200 4467400 4489900 2575100 4926900 276910 3074200 4066600 8163800 4327600 4440500 5059900 4349800 4347800 4 4 3 4 4 4 4 4 4 4 4 1180000 2395800 12779 1130300 2359600 2640300 2366600 2025900 2230600 1934900 2128700 1098800 2230800 126260 1265100 2263400 2582900 2396000 2088100 2271600 1893500 2056600 2 2 2 2 2 2 2 2 2 2 2 966850000 468480000 498370000 3399 1276;1406;1414 3176 19441;19442;19443;19444;19445;19446 23366;23367;23368;23369;23370;23371 23366 6 DTAAWTVGR Unmodified 975.47739 0.47739386 1739 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 38.646 38.758 2 4.859E-05 10370 20211116_3442_TMUAki_TMT10x_S_F4 149.57 66.196 961630 1508800 13033 1859100 1230200 958460 1144600 533030 551950 656710 1225800 895470 1409100 95633 1858400 1178200 1022400 1147100 567120 611360 636280 1161600 2 2 2 2 2 2 2 2 2 2 2 305790 466710 5777.2 513130 626770 485070 379240 179910 196580 213480 361210 284760 435660 35232 519780 595100 489030 391970 199330 213830 207110 343350 1 1 1 1 1 1 1 1 1 1 1 655840 1042000 7255.8 1346000 603390 473380 765330 353120 355360 443230 864570 610710 973480 60401 1338600 583070 533370 755150 367790 397530 429170 818250 1 1 1 1 1 1 1 1 1 1 1 36063000 10735000 25328000 3400 1739 3177 19447;19448 23372;23373 23373 2 DTAQQGVVNFPYDDFIQCVMSV Oxidation (M) 2548.125 0.12502546 877 P30626;P30626-2 SRI Sorcin yes no 0 0 1 0 By MS/MS By MS/MS 3.69 1.45 1 3 3 4 3 2 8 8 81.922 81.912 2;3 3.9155E-09 27899 20211116_3442_TMUAki_TMT10x_S_F4 106.29 96.759 13066000 21169000 79244 19386000 15601000 22863000 15960000 16026000 15907000 16435000 18196000 12165000 19746000 858440 19955000 14962000 22924000 16169000 16651000 16266000 16034000 17483000 15 15 5 15 15 15 15 15 15 15 15 8088000 13639000 76899 12196000 8196000 16380000 9021500 9623900 9037400 9776400 11080000 7530800 12721000 683060 12606000 7880200 16277000 9108300 10130000 9265800 9541900 10625000 8 8 4 8 8 8 8 8 8 8 8 4977600 7529700 2345.4 7190100 7404600 6483900 6938600 6401900 6869300 6658300 7116400 4633900 7024700 175390 7348500 7081900 6647100 7060300 6520800 7000100 6492300 6857300 7 7 1 7 7 7 7 7 7 7 7 4919300000 2902900000 2016400000 3401 877 3178 19449;19450;19451;19452;19453;19454;19455;19456;19457;19458;19459;19460;19461;19462;19463;19464 23374;23375;23376;23377;23378;23379;23380;23381;23382;23383;23384;23385;23386;23387;23388;23389 23385 1051 16 DTAQQGVVNFPYDDFIQCVMSV Unmodified 2532.1301 0.13011083 877 P30626;P30626-2 SRI Sorcin yes no 0 0 0 0 By MS/MS 4 0 2 2 84.244 84.253 2;3 3.122E-05 28437 20211116_3431_TMUAki_TMT10x_P_F4 80.96 75.881 394790 654510 0 630130 392510 536650 507400 313040 251350 339700 467690 367550 610640 27468 643160 378910 547450 500750 330360 274580 330670 444470 1 1 0 1 1 1 1 1 1 1 1 394790 654510 0 630130 392510 536650 507400 313040 251350 339700 467690 367550 610640 27468 643160 378910 547450 500750 330360 274580 330670 444470 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 85119000 85119000 0 3402 877 3178 19465;19466 23390;23391 23391 2 DTDIVDEAIYYFK Unmodified 1590.7454 0.74535503 169 O15145 ARPC3 Actin-related protein 2/3 complex subunit 3 yes yes 0 0 0 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 3 2 80.829 80.814 2;3 2.5192E-18 26652 20211116_3428_TMUAki_TMT10x_P_F1 157.97 124.09 1927500 3591900 0 3179200 2417900 2038900 2613000 1731800 1463300 1815000 2485900 1794500 3350100 148610 3255400 2322100 2140500 2604700 1778800 1575300 1769200 2366400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1927500 3591900 0 3179200 2417900 2038900 2613000 1731800 1463300 1815000 2485900 1794500 3350100 148610 3255400 2322100 2140500 2604700 1778800 1575300 1769200 2366400 1 1 0 1 1 1 1 1 1 1 1 1157600000 809570000 348060000 3403 169 3179 19467;19468;19469;19470;19471 23392;23393 23392 2 DTDSEEEIREAFR Unmodified 1595.7063 0.70634376 599 P0DP25;P0DP24;P0DP23 yes no 0 0 0 1 By MS/MS By MS/MS 1.78 0.786 4 3 2 4 5 44.795 44.679 2;3 6.8533E-90 13919 20211116_3439_TMUAki_TMT10x_S_F1 339.33 285.84 55034000 80749000 669480 126150000 68263000 62277000 47007000 44226000 44631000 41548000 64181000 51246000 75517000 5257300 124530000 64952000 66978000 48719000 45796000 46202000 40688000 61307000 13 13 9 13 13 13 13 13 13 13 13 22892000 33549000 59458 53972000 46788000 45029000 27471000 18585000 18872000 16718000 27327000 21314000 31382000 2173400 53484000 44373000 45830000 28609000 20175000 19875000 16405000 26100000 7 7 3 7 7 7 7 7 7 7 7 32142000 47200000 610020 72175000 21475000 17248000 19536000 25641000 25759000 24830000 36853000 29932000 44136000 3083900 71045000 20579000 21148000 20110000 25622000 26327000 24283000 35208000 6 6 6 6 6 6 6 6 6 6 6 20559000000 15489000000 5070500000 3404 599 3180 19472;19473;19474;19475;19476;19477;19478;19479;19480 23394;23395;23396;23397;23398;23399;23400;23401;23402;23403;23404;23405;23406;23407;23408 23405 15 DTEQYEREDFLIKPSDNLIVCGR Unmodified 2796.3389 0.33885806 1653 Q13610 PWP1 Periodic tryptophan protein 1 homolog yes yes 0 0 0 2 By MS/MS By MS/MS 4.75 0.829 2 1 1 3 1 61.515 61.559 4 4.652E-36 19594 20211116_3442_TMUAki_TMT10x_S_F4 183.15 164.11 39829000 66001000 345770 65858000 45216000 63714000 46944000 43338000 41322000 40976000 49385000 37085000 61586000 3395700 67164000 43400000 64582000 47353000 45021000 42570000 40117000 47390000 8 8 5 8 8 8 8 8 8 8 8 23130000 38119000 248910 36577000 26562000 47598000 29124000 27882000 26255000 25440000 29306000 21537000 35563000 2058700 37588000 25539000 47367000 29319000 29270000 26944000 24947000 28176000 5 5 3 5 5 5 5 5 5 5 5 16699000 27883000 96864 29281000 18654000 16116000 17821000 15457000 15067000 15536000 20078000 15548000 26023000 1337000 29576000 17861000 17215000 18035000 15751000 15626000 15170000 19214000 3 3 2 3 3 3 3 3 3 3 3 3139200000 2381600000 757610000 3405 1653 3181 19481;19482;19483;19484 23409;23410;23411;23412;23413;23414;23415;23416 23415 8 DTFYIFNHVDIK Unmodified 1510.7456 0.7456298 2606 Q99805 TM9SF2 Transmembrane 9 superfamily member 2 yes yes 0 0 0 0 By MS/MS 7 0 1 1 66.684 67.255 3 6.0054E-06 22389 20211116_3435_TMUAki_TMT10x_P_F7 102.87 83.295 9164800 15741000 0 15695000 14583000 20140000 12872000 10137000 9116300 9890200 11962000 8533100 14687000 803950 16081000 13937000 20018000 13030000 10804000 9539600 9669400 11451000 2 2 0 2 2 2 2 2 2 2 2 9164800 15741000 0 15695000 14583000 20140000 12872000 10137000 9116300 9890200 11962000 8533100 14687000 803950 16081000 13937000 20018000 13030000 10804000 9539600 9669400 11451000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 547110000 547110000 0 3406 2606 3182 19485 23417;23418 23417 2 DTGIFLDLMHLK Oxidation (M) 1417.7275 0.72753689 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 1 0 By MS/MS By MS/MS 5.33 1.15 3 2 2 2 5 4 70.417 70.522 3 0.00014283 22311 20211116_3445_TMUAki_TMT10x_S_F6 89.189 67.631 60304000 100830000 663970 91768000 65851000 104890000 71618000 88333000 92413000 88882000 78592000 56151000 94054000 5340400 94455000 63303000 105670000 72987000 90663000 92614000 86784000 76243000 8 8 5 8 8 8 8 8 8 8 8 32644000 51807000 523480 47550000 34941000 67343000 36160000 44029000 43754000 43422000 38023000 30398000 48325000 3172500 49105000 33562000 66860000 36850000 45924000 43976000 42433000 36857000 3 3 2 3 3 3 3 3 3 3 3 27660000 49027000 140490 44218000 30909000 37544000 35458000 44304000 48660000 45460000 40568000 25753000 45729000 2167900 45350000 29741000 38811000 36137000 44739000 48638000 44351000 39385000 5 5 3 5 5 5 5 5 5 5 5 14090000000 7697400000 6392300000 3407 647 3183 19486;19487;19488;19489;19490;19491;19492;19493;19494 23419;23420;23421;23422;23423;23424;23425;23426;23427;23428 23427 688 10 DTGIFLDLMHLK Unmodified 1401.7326 0.73262227 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 By MS/MS By MS/MS 6.87 1.31 1 2 2 3 7 11 4 73.219 73.212 3 4.8821E-12 27175 20211116_3435_TMUAki_TMT10x_P_F7 166.04 112.51 99099000 159610000 1492400 167120000 92940000 100940000 125270000 36234000 27645000 52570000 95356000 92282000 148960000 9466900 168970000 90015000 105460000 122360000 40595000 34799000 50670000 89890000 12 12 11 12 12 12 12 12 12 12 12 47068000 69480000 169550 74558000 47497000 58938000 57301000 18016000 13870000 25458000 43530000 43826000 64851000 4012500 75469000 45796000 60086000 56266000 20605000 17063000 24557000 41074000 9 9 8 9 9 9 9 9 9 9 9 52031000 90130000 1322800 92560000 45443000 42005000 67972000 18218000 13775000 27113000 51826000 48456000 84110000 5454300 93499000 44220000 45376000 66092000 19990000 17736000 26113000 48817000 3 3 3 3 3 3 3 3 3 3 3 16171000000 7601900000 8568800000 3408 647 3183 19495;19496;19497;19498;19499;19500;19501;19502;19503;19504;19505;19506;19507;19508;19509 23429;23430;23431;23432;23433;23434;23435;23436;23437;23438;23439;23440;23441;23442;23443;23444 23431 16 DTGKPKGEATVSFDDPPSAK Unmodified 2045.9906 0.99056411 2366 Q92804;Q92804-2 TAF15 TATA-binding protein-associated factor 2N yes no 0 0 0 2 By MS/MS 6.5 0.5 1 1 2 40.341 40.576 4 7.0011E-13 9658 20211116_3434_TMUAki_TMT10x_P_F6 134.32 119.23 3440100 5242300 51692 4566600 6354300 6424900 3762300 3303000 3658800 3293800 3984100 3203400 4889100 374200 4734200 6030800 6360400 3948600 3515600 3738300 3217300 3833200 2 2 2 2 2 2 2 2 2 2 2 3440100 5242300 51692 4566600 6354300 6424900 3762300 3303000 3658800 3293800 3984100 3203400 4889100 374200 4734200 6030800 6360400 3948600 3515600 3738300 3217300 3833200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 271620000 271620000 0 3409 2366 3184 19510;19511 23445;23446 23446 2 DTGKTPVEPEVAIHR Unmodified 1647.858 0.8580338 1278 P60866;P60866-2 RPS20 40S ribosomal protein S20 yes no 0 0 0 1 By MS/MS By MS/MS 3.92 1.32 1 1 2 2 6 6 6 32.077 32.051 3;4 2.4133E-30 8099 20211116_3431_TMUAki_TMT10x_P_F4 213.94 187.97 14165000 22232000 158070 23101000 32155000 23766000 15672000 13625000 16415000 13957000 19080000 13189000 20748000 1451200 23516000 30419000 23943000 16782000 14374000 16762000 13617000 18323000 17 17 9 17 17 17 17 17 17 17 17 9195500 13726000 88177 14964000 26701000 18811000 10143000 8840100 11045000 9094600 11906000 8561700 12812000 982720 15236000 25184000 18702000 11182000 9498800 11227000 8871800 11458000 6 6 3 6 6 6 6 6 6 6 6 4969200 8506600 69894 8137700 5453600 4955700 5529000 4784400 5370500 4862000 7174300 4627300 7936200 468460 8280300 5234300 5241000 5599500 4875400 5534500 4745300 6864900 11 11 6 11 11 11 11 11 11 11 11 4631400000 3999800000 631540000 3410 1278 3185 19512;19513;19514;19515;19516;19517;19518;19519;19520;19521;19522;19523 23447;23448;23449;23450;23451;23452;23453;23454;23455;23456;23457;23458;23459;23460;23461;23462;23463 23449 17 DTGLGLSPTASLR Unmodified 1286.683 0.68302954 30 CON__ENSEMBL:ENSBTAP00000024146 yes yes 0 0 0 0 By MS/MS 5 0 1 1 49.495 49.676 2 1.2401E-21 13394 20211116_3444_TMUAki_TMT10x_S_F5 166.87 122.15 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3411 30 3186 19524 23464 23464 1 DTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIK Unmodified 3932.7097 0.7096574 1030 P43487;P43487-2 RANBP1 Ran-specific GTPase-activating protein yes no 0 0 0 0 By MS/MS By MS/MS 1.56 0.831 6 1 2 4 5 55.242 55.055 4;5;6 4.0429E-39 16104 20211116_3428_TMUAki_TMT10x_P_F1 171.15 166.39 24686000 22974000 64653 34767000 28414000 28189000 20751000 14408000 11393000 27930000 20971000 22985000 21482000 978590 34537000 27054000 28813000 21159000 15749000 12340000 26720000 19933000 11 11 5 11 11 11 11 11 11 11 11 17576000 14193000 8259.7 23219000 21936000 22699000 15291000 9185700 6731500 18931000 13481000 16365000 13278000 520570 23042000 20865000 22852000 15593000 10313000 7462200 18088000 12796000 6 6 2 6 6 6 6 6 6 6 6 7109800 8781200 56393 11549000 6478300 5490300 5459400 5222200 4661800 8998300 7489300 6620300 8204100 458010 11496000 6188700 5960800 5566300 5436200 4877800 8632600 7137100 5 5 3 5 5 5 5 5 5 5 5 13524000000 7574800000 5949200000 3412 1030 3187 19525;19526;19527;19528;19529;19530;19531;19532;19533 23465;23466;23467;23468;23469;23470;23471;23472;23473;23474;23475 23466 11 DTHKPGEMPYVCQVCQYR Oxidation (M) 2282.9871 0.98709219 2076 Q7Z3K3;Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-6 POGZ Pogo transposable element with ZNF domain yes no 0 0 1 1 By MS/MS By MS/MS 5.67 0.943 2 1 2 1 35.073 35.264 4 6.2414E-06 7551 20211116_3444_TMUAki_TMT10x_S_F5 92.236 87.686 190100 360470 3825.3 436090 254060 219320 185230 217050 211120 187850 267680 177030 336640 20222 436300 242110 236750 192280 219920 215660 184670 256470 2 2 2 2 2 2 2 2 2 2 2 52617 85143 662.91 101980 116300 119890 67096 46572 48474 38933 59754 48996 79511 5872 103110 110320 119390 70054 50823 50529 38338 57294 1 1 1 1 1 1 1 1 1 1 1 137490 275330 3162.4 334120 137760 99425 118130 170480 162650 148920 207920 128040 257130 14350 333190 131790 117360 122230 169100 165130 146330 199170 1 1 1 1 1 1 1 1 1 1 1 199970000 172770000 27202000 3413 2076 3188 19534;19535;19536 23476;23477 23477 2578 2 DTLGLFLR Unmodified 933.52837 0.5283668 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 66.123 66.431 2 0.00038884 22532 20211116_3446_TMUAki_TMT10x_S_F7 183.9 83.831 13846000 25184000 26989 20601000 18841000 23954000 16907000 25116000 25004000 23180000 21694000 12891000 23482000 1113600 21390000 18010000 24222000 17501000 25420000 24965000 22719000 21030000 4 4 1 4 4 4 4 4 4 4 4 3363100 5725600 26989 4781000 5102100 9439600 5087700 6132200 5958400 5891200 5243200 3131600 5339000 328330 5013800 4893400 9254700 5188400 6394500 5998200 5763600 5080100 1 1 1 1 1 1 1 1 1 1 1 10483000 19458000 0 15820000 13739000 14515000 11819000 18984000 19045000 17289000 16450000 9759200 18143000 785250 16376000 13117000 14968000 12313000 19025000 18967000 16955000 15950000 3 3 0 3 3 3 3 3 3 3 3 1481600000 597710000 883940000 3414 352 3189 19537;19538;19539;19540 23478;23479;23480;23481;23482 23480 5 DTLNRIPSLR Unmodified 1183.6673 0.6673199 92 O00461 GOLIM4 Golgi integral membrane protein 4 yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 39.232 39.487 3 1.0202E-07 9271 20211116_3447_TMUAki_TMT10x_S_F8 118.9 63.841 340540 531780 13141 624160 931440 831980 474340 472740 461940 373080 490900 317180 496560 48756 633330 882420 826670 504670 495800 471520 368470 472660 1 1 1 1 1 1 1 1 1 1 1 340540 531780 13141 624160 931440 831980 474340 472740 461940 373080 490900 317180 496560 48756 633330 882420 826670 504670 495800 471520 368470 472660 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39958000 39958000 0 3415 92 3190 19541;19542 23483;23484 23484 2 DTLQSELVGQLYK Unmodified 1492.7773 0.77732386 87 O00429;O00429-2;O00429-4;O00429-3;O00429-5;O00429-9;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 By MS/MS By MS/MS 5.14 0.833 2 2 3 3 4 70.317 70.241 2;3 5.1544E-08 22194 20211116_3445_TMUAki_TMT10x_S_F6 111.86 90.985 16965000 29657000 85381 31255000 18411000 19283000 19279000 15982000 16608000 17659000 21203000 15796000 27679000 1465500 31594000 17677000 20308000 19428000 16467000 17176000 17178000 20311000 4 4 2 4 4 4 4 4 4 4 4 3034800 4962400 0 5429100 3145100 5150500 3501500 2658800 2873400 2879200 3546400 2825600 4632200 236990 5501500 3023500 5208200 3513600 2835600 2974500 2802900 3400200 1 1 0 1 1 1 1 1 1 1 1 13930000 24694000 85381 25826000 15266000 14132000 15778000 13324000 13735000 14780000 17656000 12971000 23047000 1228500 26092000 14654000 15100000 15914000 13631000 14201000 14375000 16911000 3 3 2 3 3 3 3 3 3 3 3 1967600000 447690000 1519900000 3416 87 3191 19543;19544;19545;19546;19547;19548;19549 23485;23486;23487;23488;23489;23490;23491 23491 7 DTLVQGLNEAGDDLEAVAK Unmodified 1956.964 0.96401501 3349 Q9Y6E2;Q9Y6E2-2 BZW2 Basic leucine zipper and W2 domain-containing protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 4 2 2 77.692 77.657 2;3 6.995E-11 25334 20211116_3428_TMUAki_TMT10x_P_F1 119.37 106.23 8428700 15692000 0 14548000 9593100 11353000 12417000 8119300 9539900 10856000 11742000 7847200 14638000 623660 14875000 9263400 11690000 12358000 8500300 9909200 10490000 11259000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8428700 15692000 0 14548000 9593100 11353000 12417000 8119300 9539900 10856000 11742000 7847200 14638000 623660 14875000 9263400 11690000 12358000 8500300 9909200 10490000 11259000 2 2 0 2 2 2 2 2 2 2 2 2185300000 483560000 1701700000 3417 3349 3192 19550;19551;19552;19553 23492;23493;23494 23492 3 DTLYEAVR Unmodified 965.48181 0.48181054 1381 P62906 RPL10A 60S ribosomal protein L10a yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.957 1 2 2 1 2 4 40.48 40.411 2 0.00041051 11803 20211116_3429_TMUAki_TMT10x_P_F2 141.52 82.914 7354900 11535000 28346 13951000 11168000 9613600 7477600 11299000 13786000 9361500 11874000 6848100 10772000 660970 13997000 10615000 10099000 7973100 11345000 13681000 9222800 11514000 6 6 3 6 6 6 6 6 6 6 6 1811100 2826600 5927.5 3243200 6342700 4766700 2403000 2659500 3294800 2255500 2901800 1686300 2639000 218040 3301900 5983000 4714700 2671100 2798200 3299000 2219500 2811500 2 2 1 2 2 2 2 2 2 2 2 5543800 8708000 22419 10708000 4825100 4846900 5074600 8639300 10492000 7106000 8972600 5161800 8133000 442930 10695000 4632400 5384400 5302000 8546500 10382000 7003300 8702600 4 4 2 4 4 4 4 4 4 4 4 826460000 377560000 448890000 3418 1381 3193 19554;19555;19556;19557;19558;19559 23495;23496;23497;23498;23499;23500 23495 6 DTNFGTNCICR Unmodified 1356.5551 0.55506861 996 P41223;P41223-2 BUD31 Protein BUD31 homolog yes no 0 0 0 0 By MS/MS 4 0 1 1 37.782 37.816 2 2.0571E-14 9501 20211116_3431_TMUAki_TMT10x_P_F4 160.98 141.46 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3419 996 3194 19560 23501 23501 1 DTNGENIAESLVAEGLATR Unmodified 1958.9545 0.95451296 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 By MS/MS 1.5 0.5 1 1 2 76.762 76.762 2 2.4794E-80 24939 20211116_3428_TMUAki_TMT10x_P_F1 313.87 290.95 3238900 5267100 0 4832500 2965700 6472800 3866900 3137700 3122000 3297800 3516200 3015600 4913200 247220 4985200 2865100 6417900 3852200 3363300 3222700 3214200 3379700 1 1 0 1 1 1 1 1 1 1 1 3238900 5267100 0 4832500 2965700 6472800 3866900 3137700 3122000 3297800 3516200 3015600 4913200 247220 4985200 2865100 6417900 3852200 3363300 3222700 3214200 3379700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 843430000 843430000 0 3420 2048 3195 19561;19562 23502;23503 23502 2 DTNGENIAESLVAEGLATRR Unmodified 2115.0556 0.055623984 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 3.17 1.07 2 2 1 1 2 4 66.848 66.557 3 2.0499E-24 23892 20211116_3441_TMUAki_TMT10x_S_F3 168.68 149.86 21900000 37866000 146770 32977000 25413000 30751000 24989000 24930000 23144000 22935000 28305000 20390000 35314000 1707800 33954000 24347000 31333000 25313000 25581000 23809000 22481000 27145000 5 5 2 5 5 5 5 5 5 5 5 10276000 17625000 87906 16371000 10347000 18429000 11544000 11617000 11547000 11032000 13305000 9567100 16442000 766980 16820000 9945300 18494000 11647000 12137000 11809000 10798000 12780000 2 2 1 2 2 2 2 2 2 2 2 11624000 20240000 58862 16606000 15067000 12322000 13445000 13313000 11597000 11903000 15001000 10823000 18873000 940820 17133000 14401000 12839000 13666000 13444000 12000000 11683000 14365000 3 3 1 3 3 3 3 3 3 3 3 5111900000 1809900000 3302100000 3421 2048 3196 19563;19564;19565;19566;19567;19568 23504;23505;23506;23507;23508;23509 23507 6 DTNGSQFFITTVK Unmodified 1456.7198 0.71980898 779 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.957 2 4 4 2 6 6 61.719 61.983 2;3 1.8037E-29 20136 20211116_3435_TMUAki_TMT10x_P_F7 240.65 199.11 66136000 106730000 814720 106920000 75777000 89804000 65456000 72773000 74919000 68398000 81527000 61583000 99593000 6122100 108800000 72432000 92160000 67227000 74719000 76038000 66981000 78442000 8 8 6 8 8 8 8 8 8 8 8 29141000 45291000 210060 45504000 41057000 57468000 34962000 31159000 32965000 29978000 34277000 27133000 42262000 2587400 46586000 39214000 57215000 35720000 32973000 33670000 29327000 33025000 4 4 3 4 4 4 4 4 4 4 4 36995000 61441000 604660 61414000 34720000 32337000 30494000 41614000 41954000 38420000 47251000 34450000 57331000 3534700 62219000 33217000 34944000 31507000 41746000 42368000 37655000 45417000 4 4 3 4 4 4 4 4 4 4 4 12067000000 6006200000 6061200000 3422 779 3197 19569;19570;19571;19572;19573;19574;19575;19576;19577;19578;19579;19580 23510;23511;23512;23513;23514;23515;23516;23517;23518;23519 23513 10 DTPENNPDTPFDFTPENYK Unmodified 2239.9546 0.95457253 733 P19404 NDUFV2 NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial yes yes 0 0 0 0 By MS/MS 2 0 1 1 67.508 67.197 3 2.2276E-08 22651 20211116_3429_TMUAki_TMT10x_P_F2 104.61 95.513 2648000 4179300 0 4302900 2344000 3939800 2634100 2064100 2082900 2305200 2615900 2465500 3900200 209060 4375500 2254400 3993900 2639700 2200600 2162000 2241500 2507000 1 1 0 1 1 1 1 1 1 1 1 2648000 4179300 0 4302900 2344000 3939800 2634100 2064100 2082900 2305200 2615900 2465500 3900200 209060 4375500 2254400 3993900 2639700 2200600 2162000 2241500 2507000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 477440000 477440000 0 3423 733 3198 19581 23520 23520 1 DTPGFIVNR Unmodified 1017.5243 0.52434406 1866 Q16836;Q16836-3;Q16836-2 HADH Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 42.229 42.399 2 0.0022775 10476 20211116_3444_TMUAki_TMT10x_S_F5 87.251 56.515 3591400 5598400 26195 7525600 2624600 2800000 2985800 4533600 5460800 4082500 5256400 3344000 5231100 289250 7470600 2526000 3182900 3086400 4508500 5439800 4005800 5076900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3591400 5598400 26195 7525600 2624600 2800000 2985800 4533600 5460800 4082500 5256400 3344000 5231100 289250 7470600 2526000 3182900 3086400 4508500 5439800 4005800 5076900 2 2 1 2 2 2 2 2 2 2 2 129500000 0 129500000 3424 1866 3199 19582;19583 23521;23522 23522 2 DTSATTALELVAGER Unmodified 1532.7682 0.76821573 423 O95347;O95347-2 SMC2 Structural maintenance of chromosomes protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 3 0.894 2 1 2 1 4 64.055 63.681 2;3 2.3273E-37 19948 20211116_3440_TMUAki_TMT10x_S_F2 222.72 185.38 2496800 4519600 43474 3915800 3192600 5463700 3339900 2986000 3079300 3152700 3359600 2325100 4215000 257260 4060600 3067500 5414900 3372000 3166000 3154000 3072200 3232200 1 1 1 1 1 1 1 1 1 1 1 2496800 4519600 43474 3915800 3192600 5463700 3339900 2986000 3079300 3152700 3359600 2325100 4215000 257260 4060600 3067500 5414900 3372000 3166000 3154000 3072200 3232200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 793140000 473130000 320010000 3425 423 3200 19584;19585;19586;19587;19588 23523;23524;23525;23526 23524 4 DTSEAPSSSDEK Unmodified 1251.5103 0.51026971 3209 Q9UPN9;Q9UPN9-2 TRIM33 E3 ubiquitin-protein ligase TRIM33 yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 43.15 43.064 3 0.099764 11393 20211116_3440_TMUAki_TMT10x_S_F2 27.409 12.719 3682500 5928600 108410 7431600 7028300 7027600 4874500 4417600 4292000 3961300 5367700 3429600 5537700 453200 7469300 6691500 7125500 5039000 4609600 4430000 3887600 5144700 3 3 3 3 3 3 3 3 3 3 3 2815400 4316500 82785 5488600 6213300 6313400 4171900 3270200 3333800 2981500 3969500 2622000 4032200 358160 5528800 5911300 6312400 4312500 3469800 3450800 2923800 3809500 2 2 2 2 2 2 2 2 2 2 2 867140 1612100 25623 1943000 815070 714130 702660 1147500 958160 979750 1398200 807590 1505500 95043 1940400 780250 813050 726530 1139800 979200 963780 1335200 1 1 1 1 1 1 1 1 1 1 1 144170000 115530000 28644000 3426 3209 3201 19589;19590;19591 23527 23527 1 DTSEDIEELVEPVAAHGPK Unmodified 2034.9746 0.9745797 2575 Q99460;Q99460-2 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS 1.83 0.687 2 3 1 4 2 64.507 64.277 3;4 5.5827E-24 21943 20211116_3439_TMUAki_TMT10x_S_F1 168.41 151.92 21387000 37037000 227900 34841000 23139000 33857000 24799000 24014000 23164000 23690000 27485000 19915000 34551000 1937800 35684000 22238000 34331000 25017000 24903000 23790000 23150000 26380000 10 10 6 10 10 10 10 10 10 10 10 12051000 20972000 99500 18632000 14072000 23373000 14342000 13724000 13432000 13551000 15707000 11221000 19560000 1062500 19244000 13502000 23301000 14505000 14435000 13786000 13242000 15082000 6 6 4 6 6 6 6 6 6 6 6 9336300 16065000 128400 16209000 9067400 10484000 10457000 10290000 9731500 10138000 11778000 8693900 14991000 875320 16440000 8736000 11029000 10511000 10468000 10005000 9907800 11298000 4 4 2 4 4 4 4 4 4 4 4 3840700000 2727900000 1112800000 3427 2575 3202 19592;19593;19594;19595;19596;19597 23528;23529;23530;23531;23532;23533;23534;23535;23536;23537 23535 10 DTSFEQHVLWHTGGK Unmodified 1740.822 0.82198264 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 5.57 0.904 1 2 3 1 2 5 45.649 45.851 3;4 1.7783E-19 11767 20211116_3434_TMUAki_TMT10x_P_F6 169.4 152.18 11078000 18016000 124640 23578000 16656000 12733000 12059000 9621600 9226200 9426600 13485000 10315000 16831000 1045500 23499000 15858000 13570000 12385000 9933800 9661100 9214500 12877000 5 5 3 5 5 5 5 5 5 5 5 4857400 7323600 22984 10358000 12136000 9509900 8363700 4424700 4625500 4458700 6120000 4522400 6845000 467820 10340000 11539000 9626100 8565200 4756400 4922300 4353200 5857400 2 2 1 2 2 2 2 2 2 2 2 6220600 10692000 101650 13221000 4520000 3222700 3695200 5196900 4600600 4967900 7365400 5792700 9986400 577670 13159000 4318800 3944200 3819300 5177400 4738800 4861400 7019500 3 3 2 3 3 3 3 3 3 3 3 2056800000 1118900000 937840000 3428 1092 3203 19598;19599;19600;19601;19602;19603;19604 23538;23539;23540;23541;23542 23539 5 DTSFLGSDDIGNIDVREPELEDLTR Unmodified 2805.3305 0.33046144 1122 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 0 0 0 1 By MS/MS 1 0 1 1 76.928 76.865 3 1.8179E-22 26937 20211116_3439_TMUAki_TMT10x_S_F1 142.41 133.59 4573400 8308200 0 7295400 5767900 5258500 6335500 4721400 4893100 4734000 5848000 4257900 7748700 350640 7483600 5541900 5470600 6352000 4827900 5074900 4622900 5611800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4573400 8308200 0 7295400 5767900 5258500 6335500 4721400 4893100 4734000 5848000 4257900 7748700 350640 7483600 5541900 5470600 6352000 4827900 5074900 4622900 5611800 1 1 0 1 1 1 1 1 1 1 1 586090000 0 586090000 3429 1122 3204 19605 23543 23543 1 DTSLYRPALEELRR Unmodified 1717.9111 0.911132 1609 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes yes 0 0 0 2 By MS/MS By MS/MS 6.11 0.737 2 4 3 4 5 43.81 44.089 3;4 2.2997E-43 13016 20211116_3435_TMUAki_TMT10x_P_F7 268.9 245.22 21160000 35402000 183700 39600000 28040000 28252000 20624000 26558000 27263000 24634000 29376000 19703000 33050000 1861000 39932000 26709000 29444000 21513000 27030000 27520000 24139000 28273000 13 13 10 13 13 13 13 13 13 13 13 7669200 11977000 72196 13588000 15481000 17007000 10185000 9162500 9455300 8534900 9970200 7141400 11182000 812530 13800000 14715000 16938000 10585000 9692900 9669300 8361400 9602000 4 4 4 4 4 4 4 4 4 4 4 13491000 23425000 111510 26012000 12559000 11246000 10440000 17395000 17808000 16100000 19406000 12562000 21867000 1048500 26133000 11994000 12505000 10928000 17337000 17850000 15777000 18671000 9 9 6 9 9 9 9 9 9 9 9 7448200000 4113300000 3334800000 3430 1609 3205 19606;19607;19608;19609;19610;19611;19612;19613;19614 23544;23545;23546;23547;23548;23549;23550;23551;23552;23553;23554;23555;23556;23557 23548 14 DTSNDPGQLLR Unmodified 1214.5891 0.58912916 2418 Q96BN8 OTULIN Ubiquitin thioesterase otulin yes yes 0 0 0 0 By MS/MS 3 0 1 1 37.824 37.85 2 0.0079938 11021 20211116_3430_TMUAki_TMT10x_P_F3 66.603 42.754 70927 108490 2525.2 141020 254190 182910 105860 83475 105600 83475 104040 66059 101360 10801 142190 240160 181520 115130 89890 107390 81526 100410 1 1 1 1 1 1 1 1 1 1 1 70927 108490 2525.2 141020 254190 182910 105860 83475 105600 83475 104040 66059 101360 10801 142190 240160 181520 115130 89890 107390 81526 100410 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6893200 6893200 0 3431 2418 3206 19615 23558 23558 1 DTTINEIEDTFR Unmodified 1452.6733 0.67325272 1869 Q16864;Q16864-2 ATP6V1F V-type proton ATPase subunit F yes no 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 66.812 66.563 2 6.4376E-15 22817 20211116_3439_TMUAki_TMT10x_S_F1 182.92 134.49 19600000 32869000 12855 30037000 19345000 27210000 20715000 20725000 20698000 22619000 23241000 18248000 30660000 1458100 30801000 18572000 27749000 20940000 21456000 21148000 22013000 22341000 7 7 1 7 7 7 7 7 7 7 7 6823800 10679000 0 9832800 6214600 11354000 6739000 6976600 6409400 7243700 7500100 6353000 9961800 476760 10114000 5966800 11374000 6798100 7322300 6573600 7063600 7201300 2 2 0 2 2 2 2 2 2 2 2 12776000 22190000 12855 20204000 13130000 15857000 13976000 13749000 14289000 15375000 15741000 11895000 20698000 981310 20687000 12606000 16375000 14141000 14134000 14574000 14949000 15140000 5 5 1 5 5 5 5 5 5 5 5 1301100000 838360000 462710000 3432 1869 3207 19616;19617;19618;19619 23559;23560;23561;23562;23563;23564;23565 23563 7 DTVDPVQDEMLAR Oxidation (M) 1503.6875 0.68752257 1114 P49736 MCM2 DNA replication licensing factor MCM2 yes yes 0 0 1 0 By MS/MS By MS/MS 1.33 0.471 4 2 3 3 42.277 42.154 2;3 1.1052E-08 10834 20211116_3428_TMUAki_TMT10x_P_F1 127.17 100.38 3434600 5103400 20821 6661500 5989800 5638000 3488000 4433700 5615400 3404400 5059300 3197900 4767800 314420 6670500 5680000 5779700 3734700 4537800 5599800 3367300 4897700 6 6 3 6 6 6 6 6 6 6 6 1715200 2435700 18788 3169300 4751200 4508800 2294900 2064400 2852200 1624800 2460500 1597100 2275500 202230 3201400 4495100 4455700 2473500 2209100 2863300 1604900 2385600 2 2 2 2 2 2 2 2 2 2 2 1719500 2667700 2033.9 3492200 1238600 1129200 1193100 2369300 2763200 1779600 2598800 1600800 2492300 112190 3469000 1185000 1324000 1261200 2328700 2736600 1762400 2512100 4 4 1 4 4 4 4 4 4 4 4 606480000 430980000 175500000 3433 1114 3208 19620;19621;19622;19623;19624;19625 23566;23567;23568;23569;23570 23566 1477 5 DTVTISGPQAPVFEFVEQLRK Unmodified 2360.2376 0.23761109 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 1 By MS/MS By MS/MS 6.69 1.32 1 2 2 3 5 8 5 74.379 74.395 3;4 1.4544E-67 25158 20211116_3434_TMUAki_TMT10x_P_F6 240.59 223.66 126870000 207640000 967310 188330000 128710000 151870000 131220000 106780000 98459000 112240000 133580000 118130000 193680000 10587000 192950000 123480000 155950000 131950000 111010000 102850000 109400000 127770000 16 16 10 16 16 16 16 16 16 16 16 63184000 100300000 387700 92500000 48650000 89333000 60631000 52840000 49497000 55616000 64647000 58830000 93560000 4860100 94869000 46938000 90382000 60530000 55648000 51379000 54203000 61893000 8 8 5 8 8 8 8 8 8 8 8 63688000 107340000 579610 95833000 80060000 62537000 70584000 53944000 48963000 56625000 68929000 59301000 100120000 5726900 98081000 76541000 65570000 71423000 55361000 51466000 55192000 65875000 8 8 5 8 8 8 8 8 8 8 8 25203000000 13458000000 11745000000 3434 1092 3209 19626;19627;19628;19629;19630;19631;19632;19633;19634;19635;19636;19637;19638 23571;23572;23573;23574;23575;23576;23577;23578;23579;23580;23581;23582;23583;23584;23585;23586;23587 23572 17 DTYGVRPLFK Unmodified 1194.6397 0.63970816 554 P08243;P08243-2;P08243-3 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes no 0 0 0 1 By MS/MS By MS/MS 4.33 3.35 3 1 2 3 3 47.849 48.083 3 0.00053896 13257 20211116_3428_TMUAki_TMT10x_P_F1 96.113 51.764 8110200 12537000 72642 16071000 45042000 43650000 21617000 19926000 23324000 17697000 18872000 7551200 11712000 1167600 16558000 42598000 42234000 23204000 21390000 23496000 17375000 18343000 3 3 1 3 3 3 3 3 3 3 3 8110200 12537000 72642 16071000 45042000 43650000 21617000 19926000 23324000 17697000 18872000 7551200 11712000 1167600 16558000 42598000 42234000 23204000 21390000 23496000 17375000 18343000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1583300000 1583300000 0 3435 554 3210 19639;19640;19641;19642;19643;19644 23588;23589;23590;23591;23592;23593 23589 6 DTYVSSFPR Unmodified 1070.5033 0.50327426 776 P23193;P23193-2 TCEA1 Transcription elongation factor A protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 4 1 42.382 42.466 2 1.19E-05 10443 20211116_3444_TMUAki_TMT10x_S_F5 154.49 120.94 3083500 4822300 34424 6059200 9941000 8067100 4438100 4786500 5767700 4155500 4825700 2871000 4504300 347580 6124000 9393300 8020600 4830700 5013200 5776100 4084400 4684300 2 2 1 2 2 2 2 2 2 2 2 3083500 4822300 34424 6059200 9941000 8067100 4438100 4786500 5767700 4155500 4825700 2871000 4504300 347580 6124000 9393300 8020600 4830700 5013200 5776100 4084400 4684300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 237260000 237260000 0 3436 776 3211 19645;19646;19647;19648;19649 23594;23595;23596;23597;23598 23598 5 DVACGANHTLVLDSQKR Unmodified 1882.9319 0.93194379 3056 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 2 4 4 2 35.252 35.307 3;4 5.9731E-53 8868 20211116_3433_TMUAki_TMT10x_P_F5 266.23 236.5 2736000 4424400 55304 5304100 9176100 7289000 4002200 4466500 4752800 3489700 4357300 2547800 4131700 350860 5378600 8670600 7239700 4353400 4654400 4788300 3448500 4215600 5 5 4 5 5 5 5 5 5 5 5 2328700 3801700 48585 4508800 8773400 6936500 3611100 3862500 4081400 2961700 3707400 2168400 3550000 310890 4586100 8284400 6847600 3947400 4055300 4118300 2929700 3588000 3 3 2 3 3 3 3 3 3 3 3 407350 622700 6719.7 795300 402680 352500 391120 603940 671430 528030 649890 379330 581690 39969 792530 386230 392060 406010 599080 670030 518830 627590 2 2 2 2 2 2 2 2 2 2 2 1298700000 1043700000 254940000 3437 3056 3212 19650;19651;19652;19653;19654;19655 23599;23600;23601;23602;23603 23601 5 DVAFTVGEGEDHDIPIGIDK Unmodified 2126.0168 0.016778861 1635 Q13451;Q13451-2 FKBP5 Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 2.44 1.07 2 3 2 2 4 5 66.528 66.325 3;4 2.3261E-24 22711 20211116_3439_TMUAki_TMT10x_S_F1 160.55 146.58 56700000 91895000 964040 90008000 62186000 82287000 66023000 58959000 58143000 61293000 68080000 52800000 85741000 5612400 91841000 59778000 83780000 66525000 61193000 59848000 59766000 65367000 13 13 9 13 13 13 13 13 13 13 13 28778000 43824000 375270 42850000 29505000 53250000 34007000 27975000 28250000 28973000 32273000 26798000 40889000 2723100 43938000 28425000 53038000 34081000 29749000 29134000 28256000 31008000 6 6 3 6 6 6 6 6 6 6 6 27922000 48071000 588780 47159000 32681000 29037000 32016000 30984000 29894000 32320000 35807000 26002000 44852000 2889300 47903000 31352000 30742000 32444000 31444000 30715000 31510000 34359000 7 7 6 7 7 7 7 7 7 7 7 7610500000 4174000000 3436500000 3438 1635 3213 19656;19657;19658;19659;19660;19661;19662;19663;19664 23604;23605;23606;23607;23608;23609;23610;23611;23612;23613;23614;23615;23616 23611 13 DVAIEIEERR Unmodified 1228.6412 0.64116473 1661 Q13769 THOC5 THO complex subunit 5 homolog yes yes 0 0 0 1 By MS/MS 2 0 1 1 37.08 37.179 3 0.057331 9092 20211116_3440_TMUAki_TMT10x_S_F2 45.126 24.92 314040 488850 0 582560 282530 250820 320030 311740 302050 285030 401090 292350 456500 19018 582730 271420 277350 322100 313080 311590 279470 383860 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 314040 488850 0 582560 282530 250820 320030 311740 302050 285030 401090 292350 456500 19018 582730 271420 277350 322100 313080 311590 279470 383860 1 1 0 1 1 1 1 1 1 1 1 4629100 0 4629100 3439 1661 3214 19665 23617 23617 1 DVAIKEPLVDVVDPK Unmodified 1635.9083 0.90833803 2612 Q99873;Q99873-2;Q99873-3 PRMT1 Protein arginine N-methyltransferase 1 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 1.12 2 2 2 2 4 4 64.035 63.96 3 1.6112E-09 20063 20211116_3431_TMUAki_TMT10x_P_F4 126.63 109.13 100210000 163510000 857030 177600000 123690000 148820000 106010000 98571000 94749000 99694000 118340000 93311000 152620000 9091900 179750000 118180000 152260000 108100000 102790000 97720000 97320000 113430000 12 12 8 12 12 12 12 12 12 12 12 55305000 86048000 554580 94904000 82794000 110070000 67397000 52183000 51112000 52878000 62513000 51498000 80325000 5467700 96419000 79032000 109890000 68664000 55998000 53115000 51615000 59951000 7 7 6 7 7 7 7 7 7 7 7 44907000 77460000 302450 82692000 40896000 38754000 38611000 46388000 43637000 46815000 55830000 41813000 72298000 3624200 83333000 39153000 42362000 39440000 46792000 44606000 45705000 53479000 5 5 2 5 5 5 5 5 5 5 5 8510500000 4328300000 4182200000 3440 2612 3215 19666;19667;19668;19669;19670;19671;19672;19673 23618;23619;23620;23621;23622;23623;23624;23625;23626;23627;23628;23629 23620 12 DVAPQAPVHFLVIPK Unmodified 1629.9243 0.92426287 2713 Q9BX68 HINT2 Histidine triad nucleotide-binding protein 2, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5 3.29 2 1 2 3 2 63.471 63.59 3 2.7441E-07 19080 20211116_3447_TMUAki_TMT10x_S_F8 118.16 94.558 52151000 90286000 995870 84628000 65919000 90208000 61197000 76576000 69526000 73837000 72598000 48564000 84226000 5348200 86817000 63141000 91247000 62579000 78463000 70476000 72226000 69937000 8 8 6 8 8 8 8 8 8 8 8 28326000 47157000 743150 45101000 31696000 59509000 33933000 37918000 34829000 37230000 37575000 26380000 43995000 3088200 46371000 30493000 59250000 34330000 39622000 35491000 36389000 36163000 4 4 4 4 4 4 4 4 4 4 4 23825000 43130000 252710 39527000 34222000 30699000 27264000 38657000 34697000 36607000 35022000 22184000 40231000 2259900 40447000 32648000 31997000 28249000 38841000 34984000 35837000 33775000 4 4 2 4 4 4 4 4 4 4 4 6754700000 3972000000 2782700000 3441 2713 3216 19674;19675;19676;19677;19678 23630;23631;23632;23633;23634;23635;23636;23637 23636 8 DVATVAFCDAQSTQEIHEK Unmodified 2147.9793 0.9793475 1624 Q13363;Q13363-2 CTBP1 C-terminal-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.38 0.696 1 3 4 5 3 52.578 52.555 3;4 1.873E-31 15891 20211116_3442_TMUAki_TMT10x_S_F4 185.33 170.08 12708000 21650000 169260 23565000 18526000 25028000 15808000 20299000 20815000 19311000 19566000 11833000 20209000 1208500 23927000 17700000 25301000 16332000 20848000 20912000 18901000 18913000 6 6 3 6 6 6 6 6 6 6 6 7099400 11814000 59804 12441000 12412000 19077000 10862000 11356000 11728000 10616000 10985000 6610200 11026000 659850 12747000 11862000 18851000 11126000 11913000 11867000 10399000 10620000 3 3 1 3 3 3 3 3 3 3 3 5608200 9836400 109450 11125000 6113500 5951600 4946100 8943200 9087200 8694700 8581100 5222400 9183200 548660 11181000 5837600 6449400 5206300 8934400 9045500 8502000 8293600 3 3 2 3 3 3 3 3 3 3 3 2975400000 1659800000 1315600000 3442 1624 3217 19679;19680;19681;19682;19683;19684;19685;19686 23638;23639;23640;23641;23642;23643;23644;23645 23645 8 DVAWAPSIGLPTSTIASCSQDGR Unmodified 2388.138 0.1379734 1244 P55735;P55735-2;P55735-4;P55735-3 SEC13 Protein SEC13 homolog yes no 0 0 0 0 By MS/MS By MS/MS 6.75 0.433 1 3 2 2 74.679 74.781 2;3 3.332E-43 26101 20211116_3446_TMUAki_TMT10x_S_F7 199.68 184.99 8297000 14092000 26108 12300000 9328000 15278000 11053000 9495300 8738500 9152200 11179000 7725000 13143000 657280 12719000 8984600 15251000 11050000 9935700 9077800 8952600 10709000 5 5 1 5 5 5 5 5 5 5 5 7286800 12357000 0 10584000 8012700 14067000 9917200 8169600 7522300 8019500 9630800 6784200 11524000 544920 10975000 7726300 13983000 9885700 8599500 7832300 7838400 9225200 4 4 0 4 4 4 4 4 4 4 4 1010200 1734800 26108 1715700 1315300 1211200 1135900 1325600 1216200 1132700 1548300 940830 1618700 112360 1744100 1258300 1267600 1164100 1336300 1245500 1114200 1483300 1 1 1 1 1 1 1 1 1 1 1 2974600000 1765800000 1208800000 3443 1244 3218 19687;19688;19689;19690 23646;23647;23648;23649;23650;23651 23651 6 DVCTELLPLIKPQGR Unmodified 1737.9447 0.94474031 691 P16152 CBR1 Carbonyl reductase [NADPH] 1 yes yes 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 67.127 67.153 3 6.2638E-21 22819 20211116_3446_TMUAki_TMT10x_S_F7 162.37 135.4 24109000 39465000 224430 36779000 29292000 36111000 27402000 26725000 24665000 26399000 29365000 22449000 36815000 1585800 37701000 28053000 36618000 27809000 27636000 25379000 25796000 28182000 4 4 3 4 4 4 4 4 4 4 4 11036000 18627000 211170 17795000 13070000 23011000 14512000 13375000 12489000 13917000 14063000 10277000 17378000 1140200 18290000 12581000 22904000 14582000 14102000 12850000 13570000 13518000 2 2 2 2 2 2 2 2 2 2 2 13073000 20838000 13258 18985000 16223000 13100000 12890000 13350000 12176000 12482000 15302000 12173000 19437000 445540 19411000 15472000 13714000 13227000 13535000 12529000 12226000 14664000 2 2 1 2 2 2 2 2 2 2 2 1869800000 963130000 906700000 3444 691 3219 19691;19692;19693;19694 23652;23653;23654;23655;23656;23657 23655 6 DVCTFLR Unmodified 909.43784 0.43783723 558 P08574 CYC1 Cytochrome c1, heme protein, mitochondrial yes yes 0 0 0 0 By MS/MS 6 0 1 1 48.785 48.942 2 0.021178 13370 20211116_3445_TMUAki_TMT10x_S_F6 82.671 33.081 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3445 558 3220 19695 23658 23658 1 DVDDFFEHER Unmodified 1307.5418 0.54184461 3192 Q9UNH7;Q9UNH7-2 SNX6 Sorting nexin-6;Sorting nexin-6, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 48.962 48.7 3 0.00014276 15079 20211116_3429_TMUAki_TMT10x_P_F2 86.463 77.922 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3446 3192 3221 19696;19697 23659;23660 23659 2 DVDETGITVASLER Unmodified 1503.7417 0.74166663 2294 Q8WU90 ZC3H15 Zinc finger CCCH domain-containing protein 15 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 56.125 55.73 2 8.75E-36 17958 20211116_3429_TMUAki_TMT10x_P_F2 236.34 205.77 2243300 3610800 17539 4302700 2108100 1892200 1749400 2644500 2741500 2717800 3215600 2088900 3371800 200440 4304500 2013400 2093200 1824000 2652900 2762400 2651300 3087300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2243300 3610800 17539 4302700 2108100 1892200 1749400 2644500 2741500 2717800 3215600 2088900 3371800 200440 4304500 2013400 2093200 1824000 2652900 2762400 2651300 3087300 1 1 1 1 1 1 1 1 1 1 1 153620000 0 153620000 3447 2294 3222 19698;19699;19700 23661;23662;23663 23661 3 DVDFEGTDEPIFGK Unmodified 1567.7042 0.70421849 1010 P42285 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 69.817 69.376 2;3 1.5955E-26 23483 20211116_3429_TMUAki_TMT10x_P_F2 201.6 177.31 5244300 9559900 60084 9002900 9865800 5785000 6072400 6499000 6396600 6018300 7379800 4883400 8918300 555510 9175700 9368000 6107900 6367800 6557300 6528100 5897600 7088600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5244300 9559900 60084 9002900 9865800 5785000 6072400 6499000 6396600 6018300 7379800 4883400 8918300 555510 9175700 9368000 6107900 6367800 6557300 6528100 5897600 7088600 1 1 1 1 1 1 1 1 1 1 1 375850000 0 375850000 3448 1010 3223 19701;19702;19703 23664;23665;23666 23664 3 DVDFELIK Unmodified 977.50696 0.50696266 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 0 By MS/MS By MS/MS 2.71 1.03 1 2 2 2 3 4 66.391 66.163 2 0.0025841 22701 20211116_3439_TMUAki_TMT10x_S_F1 102.51 27.134 125250000 189060000 337170 243060000 145230000 161390000 125470000 94599000 102600000 105910000 137180000 116620000 176610000 10490000 242930000 138750000 167950000 127590000 99891000 106610000 102970000 131260000 6 6 3 6 6 6 6 6 6 6 6 75915000 111200000 10405 142470000 94517000 122470000 78237000 54656000 61844000 62997000 78479000 70681000 103880000 6145400 142830000 90191000 124480000 79703000 59243000 64223000 61182000 75191000 3 3 1 3 3 3 3 3 3 3 3 49338000 77857000 326770 100600000 50716000 38915000 47228000 39943000 40759000 42909000 58698000 45941000 72734000 4345000 100100000 48556000 43472000 47888000 40648000 42385000 41785000 56069000 3 3 2 3 3 3 3 3 3 3 3 4095000000 2290500000 1804600000 3449 1079 3224 19704;19705;19706;19707;19708;19709;19710 23667;23668;23669;23670;23671;23672;23673 23670 7 DVDFELIKVEGK Unmodified 1390.7344 0.73439641 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 1 By MS/MS By MS/MS 4 1.78 1 2 2 2 2 2 1 6 6 64.427 64.31 3 5.9775E-12 23004 20211116_3441_TMUAki_TMT10x_S_F3 167.98 136.14 177190000 292040000 2221800 253490000 259120000 303650000 208450000 291340000 263780000 255210000 256420000 165000000 272360000 17411000 262080000 247280000 305960000 215800000 295750000 265660000 250740000 247580000 11 11 8 11 11 11 11 11 11 11 11 76115000 124550000 561650 106380000 121210000 188140000 98233000 123900000 111500000 110050000 108220000 70872000 116150000 7218600 111030000 115660000 185170000 101250000 128800000 112740000 108050000 104500000 5 5 3 5 5 5 5 5 5 5 5 101080000 167500000 1660100 147120000 137910000 115510000 110220000 167440000 152270000 145160000 148200000 94125000 156220000 10193000 151050000 131630000 120790000 114550000 166950000 152930000 142680000 143090000 6 6 5 6 6 6 6 6 6 6 6 20952000000 11415000000 9537600000 3450 1079 3225 19711;19712;19713;19714;19715;19716;19717;19718;19719;19720;19721;19722 23674;23675;23676;23677;23678;23679;23680;23681;23682;23683;23684;23685;23686 23681 13 DVDGLTSINAGR Unmodified 1216.6048 0.60477922 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 44.431 44.402 2 3.0487E-09 12580 20211116_3442_TMUAki_TMT10x_S_F4 156.57 127 7574500 9582100 321020 15238000 9374200 8602500 5901300 6359200 7956500 6985600 7457500 7054800 8962200 934720 15047000 8919400 9122600 6231100 6597600 7986700 6796700 7209400 3 3 2 3 3 3 3 3 3 3 3 3288700 3780200 204460 6397500 5815200 5407500 2810400 2294000 2951500 2652800 2747400 3063600 3537100 498590 6326800 5512700 5499900 3012200 2500300 2989200 2576000 2656700 1 1 1 1 1 1 1 1 1 1 1 4285800 5801900 116560 8840500 3559000 3195000 3090900 4065200 5004900 4332900 4710000 3991200 5425100 436130 8719800 3406700 3622700 3218900 4097300 4997400 4220700 4552700 2 2 1 2 2 2 2 2 2 2 2 413090000 163220000 249870000 3451 629 3226 19723;19724;19725 23687;23688;23689 23689 3 DVDIIDHHDNTYTVK Unmodified 1783.8377 0.83769228 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 43.215 43.258 4 1.0747E-06 14379 20211116_3441_TMUAki_TMT10x_S_F3 110.77 98.392 3981900 5941800 53189 7944100 7699100 6742800 4606100 5491800 5919400 4528800 5752600 3707700 5551800 407880 7944900 7306200 6915100 4874600 5618000 5958600 4462700 5554500 5 5 3 5 5 5 5 5 5 5 5 2129100 3135200 37573 4252400 6261800 5237600 3121200 2904800 3156900 2391500 3010600 1982600 2929700 255940 4274000 5926500 5222500 3331300 3055800 3204900 2356800 2908800 3 3 2 3 3 3 3 3 3 3 3 1852800 2806600 15616 3691600 1437300 1505200 1484900 2587000 2762500 2137300 2742000 1725200 2622100 151950 3670900 1379600 1692600 1543300 2562200 2753700 2105900 2645700 2 2 1 2 2 2 2 2 2 2 2 1017300000 646070000 371190000 3452 755 3227 19726;19727;19728;19729;19730;19731 23690;23691;23692;23693;23694 23693 5 DVDKFGNEITQLAR Unmodified 1604.8158 0.81583463 2264 Q8TAT6;Q8TAT6-2 NPLOC4 Nuclear protein localization protein 4 homolog yes no 0 0 0 1 By MS/MS 5 0 1 1 58.762 58.882 3 0.00064357 17185 20211116_3444_TMUAki_TMT10x_S_F5 78.441 55.065 3799100 6956300 103090 6789400 3953100 4129600 3919200 5735800 5453600 5392700 5694600 3538100 6490400 413210 6898300 3795800 4407100 4024700 5740400 5489500 5280900 5485900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3799100 6956300 103090 6789400 3953100 4129600 3919200 5735800 5453600 5392700 5694600 3538100 6490400 413210 6898300 3795800 4407100 4024700 5740400 5489500 5280900 5485900 1 1 1 1 1 1 1 1 1 1 1 217470000 0 217470000 3453 2264 3228 19732 23695 23695 1 DVDLEFLAK Unmodified 1048.5441 0.54407645 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 By MS/MS By MS/MS 3.69 1.14 2 4 4 2 1 6 7 71.233 71.113 2;3 6.0869E-06 24134 20211116_3429_TMUAki_TMT10x_P_F2 161.37 106.96 133980000 226740000 1178100 209440000 178260000 221260000 167090000 186670000 176710000 183000000 189100000 124750000 211510000 12530000 215060000 170690000 223890000 170370000 191430000 179790000 178880000 182030000 16 16 10 16 16 16 16 16 16 16 16 52846000 86145000 459990 77482000 67594000 131050000 71245000 79420000 73435000 76890000 75172000 49207000 80350000 4793700 80457000 64917000 129040000 72144000 83278000 74674000 75199000 72462000 8 8 4 8 8 8 8 8 8 8 8 81130000 140590000 718080 131960000 110660000 90208000 95841000 107250000 103280000 106110000 113930000 75545000 131160000 7735900 134600000 105770000 94856000 98221000 108150000 105120000 103680000 109570000 8 8 6 8 8 8 8 8 8 8 8 21629000000 11339000000 10290000000 3454 1235 3229 19733;19734;19735;19736;19737;19738;19739;19740;19741;19742;19743;19744;19745 23696;23697;23698;23699;23700;23701;23702;23703;23704;23705;23706;23707;23708 23696 13 DVEDFLSPLLGK Unmodified 1331.6973 0.69728262 1628 Q13405 MRPL49 39S ribosomal protein L49, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 3 2 1 80.581 80.569 2;3 7.0368E-08 26349 20211116_3445_TMUAki_TMT10x_S_F6 120.09 87.091 3489700 5346800 70996 5440900 2879800 4525000 3238400 2634100 2764700 2705400 3406300 3249800 4989500 346950 5530300 2774600 4623800 3251500 2775800 2856100 2639300 3266100 2 2 2 2 2 2 2 2 2 2 2 3489700 5346800 70996 5440900 2879800 4525000 3238400 2634100 2764700 2705400 3406300 3249800 4989500 346950 5530300 2774600 4623800 3251500 2775800 2856100 2639300 3266100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 446350000 446350000 0 3455 1628 3230 19746;19747;19748 23709;23710;23711 23711 3 DVEDMFSR Oxidation (M) 1013.4124 0.41241035 1825 Q15717;Q15717-2 ELAVL1 ELAV-like protein 1 yes no 0 0 1 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 36.338 36.29 2 0.03628 8618 20211116_3428_TMUAki_TMT10x_P_F1 67.169 58.829 1598400 2522200 19877 3237400 3402300 2637200 1994200 1816600 2039000 1548800 2476900 1488400 2356100 168910 3243200 3227600 2705200 2097800 1880400 2087900 1523700 2375900 4 4 2 4 4 4 4 4 4 4 4 1015300 1537600 2111.7 2018100 2894800 2192300 1460000 1121400 1322300 973290 1562200 945320 1436500 105570 2027500 2739300 2198600 1551700 1189800 1359800 956670 1499500 2 2 1 2 2 2 2 2 2 2 2 583070 984580 17765 1219300 507480 444890 534180 695230 716710 575550 914790 543030 919600 63336 1215700 488310 506620 546100 690640 728170 567040 876330 2 2 1 2 2 2 2 2 2 2 2 91480000 69006000 22475000 3456 1825 3231 19749;19750;19751;19752 23712;23713;23714 23712 2442 3 DVEEEKFPTQLSR Unmodified 1576.7733 0.77330111 1881 Q2TAY7;Q2TAY7-2 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes no 0 0 0 1 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 45.246 45.085 3 0.0019639 13954 20211116_3430_TMUAki_TMT10x_P_F3 70.134 57.256 4605900 7100500 51068 9732400 8376900 6928700 5757800 4713900 4691400 3909900 7652000 4288900 6635300 482270 9700800 7969400 7181700 5944300 4880500 4924400 3851800 7289900 2 2 2 2 2 2 2 2 2 2 2 2605600 3696400 43035 5616500 6686700 5688600 4168400 2822100 2660100 2074100 4319100 2426400 3456300 313290 5595300 6350800 5726300 4313200 2991600 2831100 2056500 4115100 1 1 1 1 1 1 1 1 1 1 1 2000200 3404100 8033.1 4115800 1690200 1240100 1589400 1891800 2031300 1835900 3332900 1862500 3179000 168980 4105600 1618600 1455400 1631100 1888900 2093300 1795300 3174800 1 1 1 1 1 1 1 1 1 1 1 178240000 100030000 78213000 3457 1881 3232 19753;19754;19755 23715;23716;23717 23715 3 DVEFEVVGDAPEK Unmodified 1432.6722 0.67219008 3087 Q9UBT2;Q9UBT2-2 UBA2 SUMO-activating enzyme subunit 2 yes no 0 0 0 0 By MS/MS 1 0 1 1 59.158 59.158 3 0.011329 17771 20211116_3428_TMUAki_TMT10x_P_F1 55.841 40.301 8582500 12945000 118230 14666000 12280000 15539000 10151000 8204100 9444400 8696200 10331000 7992000 12085000 867690 14853000 11728000 15611000 10386000 8726300 9670500 8472900 9938900 2 2 1 2 2 2 2 2 2 2 2 8582500 12945000 118230 14666000 12280000 15539000 10151000 8204100 9444400 8696200 10331000 7992000 12085000 867690 14853000 11728000 15611000 10386000 8726300 9670500 8472900 9938900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 231400000 231400000 0 3458 3087 3233 19756 23718;23719 23718 2 DVEFLAQLK Unmodified 1061.5757 0.57571092 1071 P78356;P48426;P48426-2 PIP4K2B;PIP4K2A Phosphatidylinositol 5-phosphate 4-kinase type-2 beta;Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 70.225 70.272 2 6.2761E-05 22947 20211116_3433_TMUAki_TMT10x_P_F5 105.1 46.186 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3459 1071 3234 19757;19758 23720;23721 23720 2 DVEGSTSPQIGDKVEFSISDK Unmodified 2237.0699 0.069936644 346 O75534;O75534-2;O75534-3;O75534-4 CSDE1 Cold shock domain-containing protein E1 yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 60.183 60.318 3;4 1.0081E-26 17774 20211116_3444_TMUAki_TMT10x_S_F5 175.32 158.57 25967000 44246000 287760 42424000 25779000 31273000 25404000 18952000 18151000 19370000 26925000 24180000 41279000 2416800 43241000 24726000 32270000 25563000 19903000 19094000 18901000 25702000 5 5 4 5 5 5 5 5 5 5 5 12271000 19797000 154390 19010000 11381000 19521000 12635000 9573100 9039900 9876500 11795000 11426000 18470000 1148800 19457000 10954000 19631000 12639000 10244000 9451600 9633400 11293000 2 2 2 2 2 2 2 2 2 2 2 13696000 24448000 133370 23414000 14398000 11752000 12769000 9378600 9111100 9493800 15129000 12754000 22809000 1268000 23785000 13773000 12639000 12924000 9658800 9642600 9267400 14409000 3 3 2 3 3 3 3 3 3 3 3 1803600000 1195900000 607720000 3460 346 3235 19759;19760;19761 23722;23723;23724;23725;23726 23724 5 DVEPEDPMFLMDPFAIHR 2 Oxidation (M) 2189.9762 0.97617637 1828 Q15773 MLF2 Myeloid leukemia factor 2 yes yes 0 0 2 0 By MS/MS 2 0 1 1 69.347 69.163 3 0.0069112 22119 20211116_3440_TMUAki_TMT10x_S_F2 53.504 42.717 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3461 1828 3236 19762 23727 23727 2447;2448 1 DVERDVFLYR Unmodified 1310.6619 0.66190017 119 O14579;O14579-3;O14579-2 COPE Coatomer subunit epsilon yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 47.783 47.77 3 2.9369E-10 15092 20211116_3430_TMUAki_TMT10x_P_F3 169.52 148.65 2988500 4665400 4048.1 4377200 3296100 2781000 2327300 5708900 5818900 4502700 4833400 2782400 4352200 234070 4462000 3134900 2997300 2519500 5620600 5732000 4447300 4693100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2988500 4665400 4048.1 4377200 3296100 2781000 2327300 5708900 5818900 4502700 4833400 2782400 4352200 234070 4462000 3134900 2997300 2519500 5620600 5732000 4447300 4693100 2 2 1 2 2 2 2 2 2 2 2 816210000 397610000 418590000 3462 119 3237 19763;19764;19765;19766 23728;23729;23730 23728 3 DVEVVRPLEK Unmodified 1182.6608 0.66083754 1080 P48681 NES Nestin yes yes 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 42.734 42.821 3 0.0022052 11778 20211116_3442_TMUAki_TMT10x_S_F4 71.085 54.511 2211500 3656400 48440 3994800 7285900 7463000 3555500 3867800 4329200 3083800 3836000 2059500 3413000 299570 4103300 6895200 7308100 3825500 4090500 4352900 3044100 3715700 1 1 1 1 1 1 1 1 1 1 1 2211500 3656400 48440 3994800 7285900 7463000 3555500 3867800 4329200 3083800 3836000 2059500 3413000 299570 4103300 6895200 7308100 3825500 4090500 4352900 3044100 3715700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 483460000 483460000 0 3463 1080 3238 19767;19768 23731;23732 23732 2 DVFFYQADDEHYIPR Unmodified 1913.8584 0.85842773 778 P23258;Q9NRH3 TUBG1;TUBG2 Tubulin gamma-1 chain;Tubulin gamma-2 chain yes no 0 0 0 0 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 61.255 61.13 3 2.3732E-19 21670 20211116_3441_TMUAki_TMT10x_S_F3 162.46 153.18 39253000 62028000 359950 64077000 40827000 46832000 37903000 35108000 33142000 36710000 43068000 36550000 57887000 3425500 64967000 39083000 48509000 38452000 36335000 34277000 35787000 41239000 8 8 5 8 8 8 8 8 8 8 8 16552000 24228000 188910 25220000 19724000 27518000 18148000 14529000 13630000 14713000 17223000 15413000 22611000 1544800 25693000 18881000 27600000 18351000 15433000 14192000 14362000 16503000 3 3 2 3 3 3 3 3 3 3 3 22701000 37801000 171040 38857000 21103000 19314000 19754000 20579000 19512000 21997000 25845000 21137000 35276000 1880700 39274000 20202000 20910000 20101000 20902000 20085000 21425000 24735000 5 5 3 5 5 5 5 5 5 5 5 2740200000 1350500000 1389700000 3464 778 3239 19769;19770;19771;19772;19773 23733;23734;23735;23736;23737;23738;23739;23740 23738 8 DVFHMVVEVPR Oxidation (M) 1342.6704 0.67035637 1777 Q15181 PPA1 Inorganic pyrophosphatase yes yes 0 0 1 0 By MS/MS By MS/MS 4.38 0.992 2 2 3 1 4 4 47.689 47.852 2;3 1.6355E-06 12681 20211116_3444_TMUAki_TMT10x_S_F5 120.96 90.754 10932000 17701000 126370 17129000 14780000 17966000 10861000 17199000 16572000 15268000 15157000 10179000 16515000 964470 17527000 14074000 18233000 11398000 17467000 16559000 14991000 14665000 7 7 4 7 7 7 7 7 7 7 7 5308400 7826800 65630 7559400 9272000 12069000 6122600 7879400 7625100 6782000 6588200 4942300 7302300 449580 7798100 8808200 11923000 6421600 8189800 7654700 6668900 6387500 3 3 2 3 3 3 3 3 3 3 3 5623600 9874500 60743 9569500 5508200 5896700 4738100 9319200 8946800 8486100 8569000 5236500 9212800 514890 9729100 5265400 6310600 4976600 9277400 8904200 8322300 8277900 4 4 2 4 4 4 4 4 4 4 4 5069200000 2386600000 2682600000 3465 1777 3240 19774;19775;19776;19777;19778;19779;19780;19781 23741;23742;23743;23744;23745;23746;23747;23748;23749;23750 23749 2378 10 DVFHMVVEVPR Unmodified 1326.6754 0.67544174 1777 Q15181 PPA1 Inorganic pyrophosphatase yes yes 0 0 0 0 By MS/MS By MS/MS 4.75 0.829 2 1 1 2 2 59.165 59.276 3 1.3008E-08 17698 20211116_3445_TMUAki_TMT10x_S_F6 151.1 129.63 4353200 6539800 53044 7004600 4540000 4810000 4602000 3570000 3083000 3544900 4803600 4053500 6104100 399310 7080200 4357100 5007600 4617800 3691600 3264000 3463200 4580600 4 4 3 4 4 4 4 4 4 4 4 2142500 2971300 20926 3624900 2337400 2936700 2523200 1418900 1328900 1455800 2165600 1994900 2775000 186200 3641500 2246300 3000100 2512700 1520400 1433900 1420300 2063200 2 2 1 2 2 2 2 2 2 2 2 2210700 3568500 32118 3379700 2202600 1873300 2078800 2151100 1754100 2089100 2638000 2058600 3329100 213100 3438700 2110800 2007500 2105100 2171200 1830100 2042900 2517400 2 2 2 2 2 2 2 2 2 2 2 1879700000 1128700000 750990000 3466 1777 3240 19782;19783;19784;19785 23751;23752;23753;23754;23755 23755 5 DVFISAAER Unmodified 1006.5084 0.50835964 745 P20618 PSMB1 Proteasome subunit beta type-1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 45.631 45.291 2 0.0036358 15204 20211116_3441_TMUAki_TMT10x_S_F3 78.264 46.043 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3467 745 3241 19786 23756 23756 1 DVFISAAERDVYTGDALR Unmodified 1996.9854 0.98541915 745 P20618 PSMB1 Proteasome subunit beta type-1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.9 1.3 2 2 2 3 1 5 5 64.096 63.926 3 2.8129E-50 22797 20211116_3441_TMUAki_TMT10x_S_F3 224.89 203.66 42115000 70924000 417390 65690000 48874000 64587000 47678000 46853000 44603000 46183000 53182000 39215000 66160000 3766700 67367000 46845000 65466000 48329000 48512000 45815000 45132000 51037000 10 10 6 10 10 10 10 10 10 10 10 25229000 41162000 165870 38591000 28232000 46937000 28065000 27837000 26613000 27493000 31786000 23491000 38399000 2132400 39676000 27066000 46872000 28432000 29256000 27321000 26865000 30503000 6 6 3 6 6 6 6 6 6 6 6 16886000 29762000 251510 27098000 20642000 17650000 19612000 19016000 17990000 18690000 21396000 15724000 27761000 1634400 27692000 19779000 18594000 19897000 19256000 18493000 18267000 20535000 4 4 3 4 4 4 4 4 4 4 4 4508500000 2558900000 1949600000 3468 745 3242 19787;19788;19789;19790;19791;19792;19793;19794;19795;19796 23757;23758;23759;23760;23761;23762;23763;23764;23765;23766;23767;23768;23769;23770 23767 14 DVFLPKPTWGNHTPIFR Unmodified 2024.0632 0.063215964 471 P00505;P00505-2 GOT2 Aspartate aminotransferase, mitochondrial yes no 0 0 0 1 By matching By MS/MS 3.33 0.471 2 1 1 2 62.703 62.416 4 1.9367E-21 19885 20211116_3442_TMUAki_TMT10x_S_F4 167.35 149.65 3569500 6166300 24246 7562100 6653200 2051600 3409100 2075400 2024300 2590500 4125200 3323700 5759000 361720 7533600 6299400 2430500 3584800 2124400 2194500 2508800 3914400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3569500 6166300 24246 7562100 6653200 2051600 3409100 2075400 2024300 2590500 4125200 3323700 5759000 361720 7533600 6299400 2430500 3584800 2124400 2194500 2508800 3914400 1 1 1 1 1 1 1 1 1 1 1 1179600000 309720000 869870000 3469 471 3243 19797;19798;19799 23771 23771 1 DVFRDPALK Unmodified 1059.5713 0.57129425 1310 P61353 RPL27 60S ribosomal protein L27 yes yes 0 0 0 1 By MS/MS By MS/MS 5.29 1.03 2 2 2 1 3 4 44.368 44.558 3 7.2148E-05 11558 20211116_3445_TMUAki_TMT10x_S_F6 138.22 95.136 39510000 60269000 169990 77659000 77578000 58161000 40874000 42466000 52303000 41028000 53062000 36788000 56302000 3784500 77705000 73461000 60100000 43733000 43925000 52736000 40129000 51163000 9 9 4 9 9 9 9 9 9 9 9 20967000 31009000 69393 41551000 62454000 44331000 25213000 21967000 27663000 21447000 27486000 19522000 28974000 2305500 41686000 58947000 44487000 27598000 23448000 28028000 20968000 26520000 5 5 2 5 5 5 5 5 5 5 5 18544000 29260000 100590 36108000 15124000 13830000 15661000 20498000 24641000 19581000 25576000 17266000 27328000 1479000 36019000 14514000 15613000 16135000 20477000 24708000 19162000 24644000 4 4 2 4 4 4 4 4 4 4 4 4401600000 2920200000 1481400000 3470 1310 3244 19800;19801;19802;19803;19804;19805;19806 23772;23773;23774;23775;23776;23777;23778;23779;23780 23780 9 DVFRDPALKR Unmodified 1215.6724 0.67240528 1310 P61353 RPL27 60S ribosomal protein L27 yes yes 0 0 0 2 By matching By MS/MS 7.5 0.5 1 1 1 1 23.815 23.982 4 0.0088685 4029 20211116_3447_TMUAki_TMT10x_S_F8 65.5 45.739 2384600 3791400 86631 3957400 2864600 2527700 2663600 3042200 3304200 2968000 3597500 2220900 3538400 285160 4004100 2746900 2674800 2732100 3065000 3343800 2901700 3461300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2384600 3791400 86631 3957400 2864600 2527700 2663600 3042200 3304200 2968000 3597500 2220900 3538400 285160 4004100 2746900 2674800 2732100 3065000 3343800 2901700 3461300 2 2 2 2 2 2 2 2 2 2 2 564670000 259820000 304850000 3471 1310 3245 19807;19808 23781;23782 23781 2 DVGAQILLHSHKK Unmodified 1444.815 0.81504677 2511 Q96KP4;Q96KP4-2 CNDP2 Cytosolic non-specific dipeptidase yes no 0 0 0 1 By MS/MS By MS/MS 3.33 3.3 2 1 1 2 37.946 38.079 5 3.5566E-09 11298 20211116_3439_TMUAki_TMT10x_S_F1 123.84 110.7 2737400 4189700 56380 4557500 3737200 3431600 2844300 3169200 3222600 2992300 3557000 2549200 3910800 293500 4606600 3564400 3559400 2943500 3230100 3273800 2929800 3420900 5 5 5 5 5 5 5 5 5 5 5 769840 1156400 17989 1246500 1615000 1641200 889200 959980 979110 916040 1066500 716930 1079400 92427 1271200 1531400 1632300 942690 1009100 995250 896460 1026100 1 1 1 1 1 1 1 1 1 1 1 1967600 3033300 38392 3311000 2122200 1790400 1955100 2209200 2243500 2076300 2490500 1832300 2831400 201070 3335400 2033000 1927100 2000800 2221000 2278500 2033300 2394800 4 4 4 4 4 4 4 4 4 4 4 208340000 122630000 85705000 3472 2511 3246 19809;19810;19811 23783;23784;23785;23786;23787 23784 5 DVGRPNFEEGGPTSVGR Unmodified 1772.8442 0.84417465 2028 Q6Y7W6;Q6Y7W6-4;Q6Y7W6-5 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 yes no 0 0 0 1 By MS/MS 3 0 1 1 36.709 36.462 3 5.5651E-09 11601 20211116_3441_TMUAki_TMT10x_S_F3 121.07 100.32 311320 540520 357.23 637820 244150 240450 271460 605130 685020 383920 559360 289880 504720 25203 637870 234810 277660 286730 590220 674330 384070 543480 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 311320 540520 357.23 637820 244150 240450 271460 605130 685020 383920 559360 289880 504720 25203 637870 234810 277660 286730 590220 674330 384070 543480 1 1 1 1 1 1 1 1 1 1 1 43266000 0 43266000 3473 2028 3247 19812 23788 23788 1 DVGRPQPGRENFQNWLK Unmodified 2040.029 0.028955723 965 P37802;P37802-2 TAGLN2 Transgelin-2 yes no 0 0 0 2 By MS/MS By MS/MS 4.5 3.2 2 1 1 2 3 3 47.356 47.401 4 7.3562E-47 12950 20211116_3428_TMUAki_TMT10x_P_F1 239.86 216.3 36407000 56417000 431060 79037000 38520000 37295000 34705000 23461000 24182000 25116000 37959000 33902000 52727000 3373500 78408000 36860000 40258000 35076000 24601000 25550000 24462000 36191000 9 9 7 9 9 9 9 9 9 9 9 15643000 23588000 118520 32814000 26678000 25908000 19970000 10346000 11041000 11402000 16357000 14565000 22044000 1485700 32720000 25414000 26469000 20330000 11336000 11811000 11092000 15614000 4 4 2 4 4 4 4 4 4 4 4 20765000 32829000 312550 46223000 11842000 11388000 14735000 13115000 13141000 13714000 21602000 19336000 30683000 1887800 45688000 11446000 13789000 14746000 13265000 13739000 13369000 20577000 5 5 5 5 5 5 5 5 5 5 5 3556400000 2422100000 1134300000 3474 965 3248 19813;19814;19815;19816;19817;19818 23789;23790;23791;23792;23793;23794;23795;23796;23797 23790 9 DVHHEPVYPQPPFSYSDLSR Unmodified 2369.1077 0.10765955 1690 Q14181;Q14181-2 POLA2 DNA polymerase alpha subunit B yes no 0 0 0 0 By matching By MS/MS 5.67 0.471 1 2 1 2 50.826 50.969 4 5.8294E-05 14186 20211116_3445_TMUAki_TMT10x_S_F6 74.953 65.031 5885400 9585400 4419.2 10133000 5314400 5073500 4888500 7759400 7764100 7277100 7971000 5479900 8946200 363930 10223000 5084900 5541000 5069900 7739200 7780100 7127100 7682900 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5885400 9585400 4419.2 10133000 5314400 5073500 4888500 7759400 7764100 7277100 7971000 5479900 8946200 363930 10223000 5084900 5541000 5069900 7739200 7780100 7127100 7682900 3 3 1 3 3 3 3 3 3 3 3 758800000 139490000 619320000 3475 1690 3249 19819;19820;19821 23798;23799;23800 23799 3 DVHNIYGLYVHMATADGLR Oxidation (M) 2160.0422 0.042222526 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 1 0 By MS/MS By MS/MS 6.75 0.433 1 3 1 3 53.83 54.208 3;4 1.8877E-08 17397 20211116_3446_TMUAki_TMT10x_S_F7 108.47 90.102 6403500 12073000 180600 11865000 7057300 6808600 6558600 10648000 10437000 9354200 10574000 5963600 11265000 708360 12043000 6765300 7334300 6798800 10594000 10453000 9189100 10196000 4 4 4 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6403500 12073000 180600 11865000 7057300 6808600 6558600 10648000 10437000 9354200 10574000 5963600 11265000 708360 12043000 6765300 7334300 6798800 10594000 10453000 9189100 10196000 4 4 4 4 4 4 4 4 4 4 4 2357500000 0 2357500000 3476 1730 3250 19822;19823;19824;19825 23801;23802;23803;23804;23805 23803 2323 5 DVHNIYGLYVHMATADGLR Unmodified 2144.0473 0.047307904 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 By MS/MS 8 0 1 1 66.194 66.107 3 0.0041723 20158 20211116_3447_TMUAki_TMT10x_S_F8 57.806 48.018 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3477 1730 3250 19826 23806 23806 1 DVHTLLDR Unmodified 967.50869 0.50869399 2888 Q9NPD3 EXOSC4 Exosome complex component RRP41 yes yes 0 0 0 0 By MS/MS 4 0 1 1 35.328 35.435 3 0.0060688 8955 20211116_3442_TMUAki_TMT10x_S_F4 76.064 57.333 159730 245660 0 261750 159980 184440 184770 176490 182090 199140 203160 148720 229280 7191.5 264730 154000 192490 186040 180530 186110 193560 195330 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 159730 245660 0 261750 159980 184440 184770 176490 182090 199140 203160 148720 229280 7191.5 264730 154000 192490 186040 180530 186110 193560 195330 2 2 0 2 2 2 2 2 2 2 2 6754000 0 6754000 3478 2888 3251 19827 23807;23808 23807 2 DVIATDKEDVAFK Unmodified 1449.7351 0.73512469 988 P40925;P40925-3 MDH1 Malate dehydrogenase, cytoplasmic yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 52.337 52.469 3 3.8561E-05 14546 20211116_3444_TMUAki_TMT10x_S_F5 99.481 70.716 24536000 37192000 454840 49938000 16791000 17383000 18708000 25065000 25884000 23756000 29465000 22849000 34751000 2349600 49558000 16176000 19890000 19099000 25057000 26145000 23255000 28313000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24536000 37192000 454840 49938000 16791000 17383000 18708000 25065000 25884000 23756000 29465000 22849000 34751000 2349600 49558000 16176000 19890000 19099000 25057000 26145000 23255000 28313000 3 3 3 3 3 3 3 3 3 3 3 1252000000 0 1252000000 3479 988 3252 19828;19829 23809;23810;23811 23811 3 DVIDEPIIEEPSRLQESVMEASR Oxidation (M) 2657.2854 0.2854255 255 O60216 RAD21 Double-strand-break repair protein rad21 homolog yes yes 0 0 1 1 By MS/MS By MS/MS 1 0 2 1 1 65.608 65.489 3 2.6214E-07 20331 20211116_3428_TMUAki_TMT10x_P_F1 89.663 74.535 8349600 14288000 135660 12943000 10112000 14638000 10469000 13761000 14323000 13770000 12682000 7775200 13327000 824690 13325000 9712200 14788000 10720000 14036000 14345000 13448000 12285000 5 5 3 5 5 5 5 5 5 5 5 4004900 6449400 36992 5689700 3725700 8890100 4862400 6279200 6400400 6300700 5530000 3729200 6015200 361660 5906000 3603100 8800600 4920400 6516700 6413100 6152700 5361600 2 2 1 2 2 2 2 2 2 2 2 4344700 7838600 98664 7253500 6386700 5748300 5606600 7481800 7922900 7469000 7152500 4046000 7312000 463040 7418600 6109100 5987800 5799500 7519100 7931500 7295100 6923600 3 3 2 3 3 3 3 3 3 3 3 2120700000 1298000000 822770000 3480 255 3253 19830;19831 23812;23813;23814;23815;23816 23813 201 5 DVIDEPIIEEPSRLQESVMEASR Unmodified 2641.2905 0.29051088 255 O60216 RAD21 Double-strand-break repair protein rad21 homolog yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 71.792 71.728 3 2.9408E-43 24863 20211116_3439_TMUAki_TMT10x_S_F1 195.71 172.8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3481 255 3253 19832;19833 23817;23818 23818 2 DVIEEYFK Unmodified 1041.5019 0.50187728 801 P25398 RPS12 40S ribosomal protein S12 yes yes 0 0 0 0 By MS/MS By MS/MS 3 1.41 2 2 2 2 2 5 5 66.986 66.842 2 0.00094438 21217 20211116_3431_TMUAki_TMT10x_P_F4 131.06 83.995 167860000 287210000 1494200 306370000 222270000 257490000 166060000 189580000 208350000 194220000 219440000 156300000 268070000 15690000 310470000 211780000 263800000 172690000 196320000 210500000 189500000 211340000 16 16 10 16 16 16 16 16 16 16 16 86829000 142950000 255070 151890000 142360000 187950000 102800000 95234000 105400000 96963000 108940000 80846000 133420000 7859100 154860000 135500000 187160000 106430000 101560000 107240000 94627000 104980000 8 8 3 8 8 8 8 8 8 8 8 81030000 144250000 1239100 154490000 79909000 69539000 63259000 94348000 102940000 97261000 110500000 75456000 134640000 7830500 155610000 76275000 76639000 66265000 94762000 103260000 94870000 106360000 8 8 7 8 8 8 8 8 8 8 8 19557000000 11763000000 7793600000 3482 801 3254 19834;19835;19836;19837;19838;19839;19840;19841;19842;19843 23819;23820;23821;23822;23823;23824;23825;23826;23827;23828;23829;23830;23831;23832;23833;23834 23824 16 DVIELTDDSFDK Unmodified 1395.6406 0.64055561 1769 Q15084;Q15084-5;Q15084-3;Q15084-4;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 0 By MS/MS By MS/MS 1.83 0.898 3 1 2 3 3 67.8 67.663 2;3 1.0667E-16 23243 20211116_3439_TMUAki_TMT10x_S_F1 211.64 186.87 20781000 33789000 460360 40790000 18947000 17812000 20194000 14326000 14593000 15288000 22486000 19352000 31555000 2126200 40775000 18227000 19485000 20245000 14770000 15371000 14892000 21447000 5 5 5 5 5 5 5 5 5 5 5 3134000 5443700 188470 6080200 4709500 6461300 3848700 4033000 3217000 3621500 4197500 2919500 5082000 457540 6163500 4505500 6504300 3929300 4210700 3335200 3553900 4018800 1 1 1 1 1 1 1 1 1 1 1 17647000 28345000 271890 34710000 14238000 11351000 16345000 10293000 11376000 11667000 18288000 16433000 26473000 1668700 34611000 13721000 12980000 16316000 10560000 12036000 11338000 17428000 4 4 4 4 4 4 4 4 4 4 4 1018100000 347790000 670340000 3483 1769 3255 19844;19845;19846;19847;19848;19849 23835;23836;23837;23838;23839;23840;23841;23842 23840 8 DVIGIAHHPHQNLIATYSEDGLLK Unmodified 2640.366 0.36599951 1881 Q2TAY7;Q2TAY7-2 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 7 0.707 1 2 1 1 3 55.602 55.921 4;5 8.9355E-17 17609 20211116_3435_TMUAki_TMT10x_P_F7 130.83 115.41 8033000 12395000 63950 13116000 9923000 10875000 8308000 9760900 9510600 9276300 10867000 7479700 11569000 718540 13296000 9475700 11192000 8548800 9966000 9670900 9079700 10441000 2 2 1 2 2 2 2 2 2 2 2 2389400 3624400 63950 3837900 3052200 4983300 3195500 3006800 2812800 2713000 2883500 2225200 3382700 266980 3917300 2934100 4961600 3222000 3148000 2880800 2661800 2779500 1 1 1 1 1 1 1 1 1 1 1 5643600 8771000 0 9278000 6870800 5891600 5112500 6754200 6697800 6563300 7983700 5254500 8186200 451560 9378600 6541600 6230200 5326800 6817900 6790100 6417900 7661800 1 1 0 1 1 1 1 1 1 1 1 4050700000 907250000 3143400000 3484 1881 3256 19850;19851;19852;19853 23843;23844 23843 2 DVIIADCGK Unmodified 989.48518 0.48518136 779 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 0 0 By MS/MS By MS/MS 3.4 0.49 3 2 2 3 44.912 45.026 2;3 2.3367E-05 15113 20211116_3441_TMUAki_TMT10x_S_F3 141.48 95.054 2992400 4611400 55498 6033900 2432100 2109400 3217900 1960400 2046800 1996000 3300700 2786700 4308300 291970 5996400 2355100 2387700 3186700 2001800 2178000 1948000 3145300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2992400 4611400 55498 6033900 2432100 2109400 3217900 1960400 2046800 1996000 3300700 2786700 4308300 291970 5996400 2355100 2387700 3186700 2001800 2178000 1948000 3145300 1 1 1 1 1 1 1 1 1 1 1 338910000 71792000 267120000 3485 779 3257 19854;19855;19856;19857;19858 23845;23846;23847;23848 23846 4 DVIVKVDQICHK Unmodified 1452.7759 0.77588407 3076 Q9UBE0;Q9UBE0-3;Q9UBE0-2 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed yes no 0 0 0 1 By MS/MS 6 0 1 1 47.311 47.472 4 0.0010163 12807 20211116_3445_TMUAki_TMT10x_S_F6 79.633 58.002 961780 1501100 9633.9 1460600 1213500 982990 879850 1454500 1339800 1251900 1357700 895580 1400500 92242 1485800 1155800 1041500 924160 1448900 1343500 1231000 1309200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 961780 1501100 9633.9 1460600 1213500 982990 879850 1454500 1339800 1251900 1357700 895580 1400500 92242 1485800 1155800 1041500 924160 1448900 1343500 1231000 1309200 1 1 1 1 1 1 1 1 1 1 1 82599000 0 82599000 3486 3076 3258 19859 23849 23849 1 DVIYAVR Unmodified 834.45995 0.45995289 1524 Q06203 PPAT Amidophosphoribosyltransferase yes yes 0 0 0 0 By MS/MS 3 0 1 1 40.016 40.07 2 0.035766 11914 20211116_3430_TMUAki_TMT10x_P_F3 76.847 12.043 244460 392840 8768.7 455420 548110 492920 327130 250680 265450 238370 309100 227680 366800 32692 460740 520530 494390 341470 266730 274300 233310 296830 1 1 1 1 1 1 1 1 1 1 1 244460 392840 8768.7 455420 548110 492920 327130 250680 265450 238370 309100 227680 366800 32692 460740 520530 494390 341470 266730 274300 233310 296830 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11456000 11456000 0 3487 1524 3259 19860 23850 23850 1 DVKPSNILLDER Unmodified 1397.7514 0.75144346 126 O14733;O14733-4;O14733-3;O14733-2 MAP2K7 Dual specificity mitogen-activated protein kinase kinase 7 yes no 0 0 0 1 By MS/MS 4 0 1 1 47.362 47.536 3 0.0036771 13808 20211116_3442_TMUAki_TMT10x_S_F4 63.709 44.438 1795200 2837200 41649 3335400 1482500 1413900 1454400 2412200 2479200 2147800 2550600 1671800 2649300 183270 3338700 1423300 1581400 1508500 2394200 2479800 2108600 2458200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1795200 2837200 41649 3335400 1482500 1413900 1454400 2412200 2479200 2147800 2550600 1671800 2649300 183270 3338700 1423300 1581400 1508500 2394200 2479800 2108600 2458200 1 1 1 1 1 1 1 1 1 1 1 76875000 0 76875000 3488 126 3260 19861 23851 23851 1 DVKPSNILVNSR Unmodified 1340.7412 0.74121312 1496;948 P36507;Q02750;Q02750-2 MAP2K2;MAP2K1 Dual specificity mitogen-activated protein kinase kinase 2;Dual specificity mitogen-activated protein kinase kinase 1 no no 0 0 0 1 By MS/MS By MS/MS 7.25 0.829 1 1 2 2 2 39.949 40.253 3 7.8788E-12 10113 20211116_3436_TMUAki_TMT10x_P_F8 164.2 139.64 5694900 8409000 40242 10370000 17198000 13067000 7034900 7450700 8581800 6635600 8019200 5302600 7853900 649640 10481000 16236000 13020000 7715100 7834400 8642800 6514200 7753200 4 4 3 4 4 4 4 4 4 4 4 4782100 6911100 22662 8508900 16384000 12329000 6272500 6152700 7198600 5551400 6541200 4452600 6454800 558960 8624700 15455000 12186000 6919800 6549300 7259500 5446600 6330400 3 3 2 3 3 3 3 3 3 3 3 912770 1497900 17580 1860700 814480 738370 762450 1298000 1383200 1084100 1478000 850010 1399100 90682 1855800 780720 834000 795330 1285100 1383300 1067600 1422900 1 1 1 1 1 1 1 1 1 1 1 967440000 759890000 207550000 3489 948;1496 3261 19862;19863;19864;19865 23852;23853;23854;23855;23856 23854 5 DVKPSNVLINALGQVK Unmodified 1693.9727 0.97266962 1178 P52564;P52564-2 MAP2K6 Dual specificity mitogen-activated protein kinase kinase 6 yes no 0 0 0 1 By MS/MS By MS/MS 2.4 0.49 3 2 2 3 68.44 68.202 3;4 6.2378E-11 21750 20211116_3440_TMUAki_TMT10x_S_F2 136.63 118.31 26510000 44669000 94662 39619000 26996000 31600000 28833000 21189000 18429000 23678000 29482000 24683000 41662000 2148300 40655000 25928000 32453000 28828000 22144000 19596000 23022000 28098000 4 4 2 4 4 4 4 4 4 4 4 10158000 14910000 0 13571000 8547000 14725000 10359000 6927200 6254400 8068900 9961900 9457400 13907000 752850 13956000 8236400 14755000 10286000 7470900 6674000 7833500 9495100 1 1 0 1 1 1 1 1 1 1 1 16352000 29760000 94662 26048000 18449000 16875000 18474000 14262000 12175000 15609000 19520000 15225000 27755000 1395400 26699000 17691000 17698000 18542000 14673000 12922000 15189000 18603000 3 3 2 3 3 3 3 3 3 3 3 2362000000 1077800000 1284200000 3490 1178 3262 19866;19867;19868;19869;19870 23857;23858;23859;23860;23861;23862 23861 6 DVLDVYIEHR Unmodified 1257.6354 0.63535107 913 P33993;P33993-2 MCM7 DNA replication licensing factor MCM7 yes no 0 0 0 0 By MS/MS By MS/MS 3.25 0.829 1 1 2 1 3 52.635 52.487 3 7.4736E-08 15414 20211116_3431_TMUAki_TMT10x_P_F4 119.34 91.471 3212900 4804600 134.63 6214700 2814700 2357800 2724700 3107400 2899100 2882900 3650000 2991400 4488400 238320 6182800 2695100 2656700 2773900 3114900 2968400 2824800 3497800 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3212900 4804600 134.63 6214700 2814700 2357800 2724700 3107400 2899100 2882900 3650000 2991400 4488400 238320 6182800 2695100 2656700 2773900 3114900 2968400 2824800 3497800 3 3 1 3 3 3 3 3 3 3 3 592680000 0 592680000 3491 913 3263 19871;19872;19873;19874 23863;23864;23865;23866;23867 23863 5 DVLEGYNGTIFAYGQTSSGK Unmodified 2105.9906 0.99056411 906;262 O60282;P33176 KIF5C;KIF5B Kinesin heavy chain isoform 5C;Kinesin-1 heavy chain no no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 72.081 72.141 3 1.4123E-25 22955 20211116_3445_TMUAki_TMT10x_S_F6 178.71 159.63 10248000 17413000 103310 15987000 12914000 11382000 11710000 10548000 10286000 11612000 12671000 9541400 16243000 859930 16341000 12351000 11861000 11896000 10799000 10611000 11297000 12149000 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10248000 17413000 103310 15987000 12914000 11382000 11710000 10548000 10286000 11612000 12671000 9541400 16243000 859930 16341000 12351000 11861000 11896000 10799000 10611000 11297000 12149000 4 4 2 4 4 4 4 4 4 4 4 1447000000 0 1447000000 3492 262;906 3264 19875;19876 23868;23869;23870;23871 23869 4 DVLGCVCVNPGR Unmodified 1344.6278 0.62783962 1690 Q14181 POLA2 DNA polymerase alpha subunit B yes yes 0 0 0 0 By MS/MS 6 0 2 2 49.211 49.362 2 2.66E-12 13536 20211116_3445_TMUAki_TMT10x_S_F6 142.43 96.269 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3493 1690 3265 19877;19878 23872;23873 23872 2 DVLLQVDDERR Unmodified 1356.6997 0.69974224 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 1 By MS/MS By MS/MS 2.38 0.992 2 2 3 1 4 4 41.294 41.21 3 8.5724E-19 12054 20211116_3429_TMUAki_TMT10x_P_F2 221.75 177.21 18367000 28293000 226040 33677000 24868000 23296000 19049000 18201000 18566000 17709000 23184000 17102000 26420000 1757800 33821000 23708000 24258000 19612000 18748000 19073000 17315000 22222000 11 11 8 11 11 11 11 11 11 11 11 9274600 13594000 37608 15420000 16402000 15948000 10031000 9066300 9530500 8363200 11303000 8635700 12691000 889990 15610000 15568000 16059000 10493000 9544200 9780400 8196900 10848000 6 6 4 6 6 6 6 6 6 6 6 9092200 14699000 188440 18257000 8466300 7348300 9017700 9134600 9035400 9345400 11881000 8466700 13729000 867850 18211000 8139700 8199000 9118800 9203600 9292200 9118500 11373000 5 5 4 5 5 5 5 5 5 5 5 1553600000 786070000 767500000 3494 934 3266 19879;19880;19881;19882;19883;19884;19885;19886 23874;23875;23876;23877;23878;23879;23880;23881;23882;23883;23884;23885 23876 12 DVLQAAAAEHQDQGQEVNGEVR Unmodified 2363.1102 0.11017875 1548 Q08378;Q08378-2;Q08378-4 GOLGA3 Golgin subfamily A member 3 yes no 0 0 0 0 By MS/MS 2 0 1 1 40.795 40.524 3 5.4151E-68 11792 20211116_3429_TMUAki_TMT10x_P_F2 238.49 228.93 138700 239860 2113.1 303020 444390 425510 222590 183920 246140 140990 226580 129160 224050 17750 306500 420650 420500 238110 197900 248680 139470 219180 1 1 1 1 1 1 1 1 1 1 1 138700 239860 2113.1 303020 444390 425510 222590 183920 246140 140990 226580 129160 224050 17750 306500 420650 420500 238110 197900 248680 139470 219180 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 51893000 51893000 0 3495 1548 3267 19887 23886 23886 1 DVLQAETSQQLCCQK Unmodified 1806.824 0.82403283 3192 Q9UNH7;Q9UNH7-2 SNX6 Sorting nexin-6;Sorting nexin-6, N-terminally processed yes no 0 0 0 0 By MS/MS 4 0 1 1 49.042 49.196 3 0.013598 14466 20211116_3442_TMUAki_TMT10x_S_F4 52.372 38.117 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3496 3192 3268 19888 23887 23887 1 DVLSNAHIQNELEREFER Unmodified 2198.0716 0.071608399 796 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 58.257 58.011 4 0.00011416 18880 20211116_3429_TMUAki_TMT10x_P_F2 77.871 67.949 10702000 17544000 2530.7 15415000 11350000 15541000 10915000 10778000 10149000 9948200 12464000 9963600 16363000 812490 15878000 10867000 15718000 11070000 11174000 10441000 9750200 11952000 2 2 1 2 2 2 2 2 2 2 2 8890700 14405000 0 12520000 9462600 13806000 9339300 8702700 8158800 8201400 10069000 8277500 13435000 658920 12925000 9064500 13871000 9443200 9090800 8419700 8030500 9653900 1 1 0 1 1 1 1 1 1 1 1 1810900 3138900 2530.7 2895600 1887700 1735200 1575500 2075400 1990500 1746900 2395500 1686100 2928000 153570 2953800 1802300 1847000 1627200 2083100 2021200 1719600 2298300 1 1 1 1 1 1 1 1 1 1 1 2252300000 1456400000 795900000 3497 796 3269 19889;19890;19891;19892 23888;23889 23888 2 DVLSVAFSSDNR Unmodified 1308.631 0.63099397 1405 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 4 1.37 1 1 3 4 4 2 9 6 59.278 59.246 2;3 6.9488E-60 18589 20211116_3442_TMUAki_TMT10x_S_F4 320.02 299.69 83240000 138760000 1276100 142330000 107510000 137290000 93270000 97835000 95639000 95768000 104550000 77509000 129490000 7756800 144880000 102760000 139290000 95426000 101400000 97508000 93617000 100580000 20 20 8 20 20 20 20 20 20 20 20 48805000 79663000 1156800 81726000 70227000 105890000 61623000 59322000 57685000 58214000 62120000 45448000 74341000 5146200 83590000 67172000 105340000 62834000 62632000 59014000 56901000 59787000 11 11 6 11 11 11 11 11 11 11 11 34436000 59093000 119320 60607000 37287000 31406000 31648000 38512000 37954000 37553000 42429000 32061000 55146000 2610600 61286000 35592000 33955000 32592000 38769000 38495000 36716000 40791000 9 9 2 9 9 9 9 9 9 9 9 23801000000 12808000000 10994000000 3498 1405 3270 19893;19894;19895;19896;19897;19898;19899;19900;19901;19902;19903;19904;19905;19906;19907 23890;23891;23892;23893;23894;23895;23896;23897;23898;23899;23900;23901;23902;23903;23904;23905;23906;23907;23908;23909;23910 23904 21 DVMEGVTVDDHMMK 3 Oxidation (M) 1653.6684 0.66844339 1915 Q5BKZ1;Q5BKZ1-3 ZNF326 DBIRD complex subunit ZNF326 yes no 0 0 3 0 By MS/MS 2 0 1 1 33.724 33.502 3 0.014863 8896 20211116_3429_TMUAki_TMT10x_P_F2 51.957 39.574 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3499 1915 3271 19908 23911 23911 2509;2510;2511 1 DVMSDETNNEETESPSQEFVNITK Oxidation (M) 2758.1763 0.17632856 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 1 0 By MS/MS By MS/MS 1.5 0.866 3 1 1 3 60.605 60.356 3;4 1.2757E-29 21343 20211116_3441_TMUAki_TMT10x_S_F3 173.18 152.75 9965200 16976000 143640 17354000 10585000 14786000 10307000 14437000 14066000 13912000 13513000 9279400 15842000 937240 17639000 10149000 15214000 10586000 14681000 14126000 13609000 13053000 6 6 4 6 6 6 6 6 6 6 6 3003800 4997500 32764 4782100 3563200 7147000 4110600 4487000 4501800 4289400 3865700 2797100 4662400 287410 4929100 3432300 7075300 4153000 4690400 4540100 4197400 3748800 2 2 2 2 2 2 2 2 2 2 2 6961400 11978000 110880 12572000 7022000 7639400 6196600 9950500 9564700 9622800 9647800 6482300 11179000 649830 12710000 6716900 8138700 6432900 9990500 9586000 9411600 9304300 4 4 2 4 4 4 4 4 4 4 4 3647900000 1329000000 2318900000 3500 1057 3272 19909;19910;19911;19912 23912;23913;23914;23915;23916;23917 23917 1370 6 DVMSDETNNEETESPSQEFVNITK Unmodified 2742.1814 0.18141394 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.943 2 1 1 2 66.269 66.038 3 9.3083E-45 22602 20211116_3439_TMUAki_TMT10x_S_F1 193.11 178.57 2845900 4745700 83455 5037400 3135100 3337500 3275500 1472100 1145400 1796100 3013100 2650300 4429300 299810 5093000 3013500 3462900 3249200 1600600 1324700 1740800 2848800 2 2 1 2 2 2 2 2 2 2 2 1700100 2736600 83455 2902000 1914800 2529500 2338600 847760 647010 1055900 1732100 1583600 2554100 221730 2943300 1851700 2562000 2297600 953050 770750 1022700 1637300 1 1 1 1 1 1 1 1 1 1 1 1145800 2009100 0 2135400 1220300 808000 936940 624380 498390 740220 1281000 1066700 1875200 78075 2149700 1161800 900890 951620 647570 553990 718170 1211500 1 1 0 1 1 1 1 1 1 1 1 894340000 506140000 388200000 3501 1057 3272 19913;19914;19915 23918;23919;23920 23919 3 DVNAAIATIK Unmodified 1014.571 0.5709599 1417;2044;2007 P68363;P68363-2;Q71U36;Q71U36-2;Q9BQE3;P0DPH8;P0DPH7;P0DPH7-2;Q6PEY2 TUBA1B;TUBA1A;TUBA1C;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-3E chain no no 0 0 0 0 By MS/MS By MS/MS 6 1.15 3 4 5 8 1 9 12 50.642 50.865 2;3 1.6029E-11 16174 20211116_3431_TMUAki_TMT10x_P_F4 215.72 128.08 265940000 392330000 2611200 440350000 369620000 336150000 274490000 270190000 261860000 250570000 304530000 247620000 366270000 23540000 444280000 352020000 347390000 283010000 277450000 268460000 245530000 292450000 25 25 16 25 25 25 25 25 25 25 25 120050000 171950000 883880 191520000 243350000 214570000 127070000 121210000 126150000 115690000 141040000 111780000 160520000 11997000 194350000 230430000 215070000 134940000 127780000 128910000 113220000 135600000 12 12 6 12 12 12 12 12 12 12 12 145900000 220380000 1727300 248830000 126270000 121580000 147430000 148980000 135710000 134870000 163490000 135840000 205750000 11543000 249940000 121580000 132320000 148070000 149670000 139560000 132310000 156850000 13 13 10 13 13 13 13 13 13 13 13 53357000000 26803000000 26553000000 3502 1417;2044;2007 3273 19916;19917;19918;19919;19920;19921;19922;19923;19924;19925;19926;19927;19928;19929;19930;19931;19932;19933;19934;19935;19936 23921;23922;23923;23924;23925;23926;23927;23928;23929;23930;23931;23932;23933;23934;23935;23936;23937;23938;23939;23940;23941;23942;23943;23944;23945;23946;23947;23948;23949 23923 29 DVNFEFPEFQL Unmodified 1383.6347 0.63468237 1332 P62081 RPS7 40S ribosomal protein S7 yes yes 0 0 0 0 By MS/MS By MS/MS 2.58 1.48 5 27 6 2 2 1 1 1 26 19 54.543 54.5 2 1.3037E-15 29233 20211116_3430_TMUAki_TMT10x_P_F3 200.56 178.33 91833000 141170000 154670 138760000 91329000 112820000 96605000 69819000 70637000 75226000 99570000 85492000 131710000 4387700 141340000 87596000 115570000 96911000 73319000 74024000 73247000 95156000 46 46 23 46 46 46 46 46 46 46 46 51255000 74485000 116080 72963000 44323000 72266000 48432000 37858000 36969000 40077000 53003000 47719000 69497000 2061700 74531000 42568000 72889000 48557000 40294000 38680000 39050000 50633000 27 27 19 27 27 27 27 27 27 27 27 40578000 66680000 38587 65797000 47006000 40558000 48173000 31961000 33667000 35149000 46567000 37773000 62216000 2326000 66809000 45028000 42681000 48354000 33025000 35343000 34197000 44523000 19 19 4 19 19 19 19 19 19 19 19 62216000000 32519000000 29698000000 3503 1332 3274 19937;19938;19939;19940;19941;19942;19943;19944;19945;19946;19947;19948;19949;19950;19951;19952;19953;19954;19955;19956;19957;19958;19959;19960;19961;19962;19963;19964;19965;19966;19967;19968;19969;19970;19971;19972;19973;19974;19975;19976;19977;19978;19979;19980;19981 23950;23951;23952;23953;23954;23955;23956;23957;23958;23959;23960;23961;23962;23963;23964;23965;23966;23967;23968;23969;23970;23971;23972;23973;23974;23975;23976;23977;23978;23979;23980;23981;23982;23983;23984;23985;23986;23987;23988;23989;23990;23991;23992;23993;23994;23995;23996;23997;23998;23999 23970 50 DVNGELIAVQR Unmodified 1212.6463 0.64625011 2370 Q92878;Q92878-2 RAD50 DNA repair protein RAD50 yes no 0 0 0 0 By MS/MS 3 0 1 1 45.581 45.241 2 4.6477E-07 15194 20211116_3441_TMUAki_TMT10x_S_F3 138.76 105.02 1050400 1585800 16400 1863000 1010500 893480 874700 1443100 1687800 1321200 1466200 978120 1480800 101810 1866500 966500 982370 919520 1435800 1673600 1295400 1421200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1050400 1585800 16400 1863000 1010500 893480 874700 1443100 1687800 1321200 1466200 978120 1480800 101810 1866500 966500 982370 919520 1435800 1673600 1295400 1421200 1 1 1 1 1 1 1 1 1 1 1 80076000 0 80076000 3504 2370 3275 19982 24000 24000 1 DVNQQEFVR Unmodified 1133.5465 0.54653606 974 P39019 RPS19 40S ribosomal protein S19 yes yes 0 0 0 0 By MS/MS By MS/MS 2.14 0.99 2 3 1 1 3 4 34.769 34.718 2 1.5463E-10 7484 20211116_3440_TMUAki_TMT10x_S_F2 219.97 172.1 7263200 11609000 10451 13749000 15647000 10178000 8327000 5588900 8097500 5720700 9542000 6762100 10840000 633060 13821000 14813000 10486000 8822100 5918000 8299100 5581700 9160100 10 10 3 10 10 10 10 10 10 10 10 3386200 5229700 5455 6322300 12737000 7014000 4269400 2729600 4159900 2746500 4336900 3152600 4883900 384620 6382900 11998000 7006500 4770000 2992000 4243000 2681700 4178100 3 3 2 3 3 3 3 3 3 3 3 3877100 6379300 4995.8 7426500 2909800 3164200 4057700 2859300 3937600 2974200 5205100 3609500 5956500 248440 7438600 2815100 3479600 4052100 2926000 4056100 2900100 4981900 7 7 1 7 7 7 7 7 7 7 7 528260000 321430000 206830000 3505 974 3276 19983;19984;19985;19986;19987;19988;19989 24001;24002;24003;24004;24005;24006;24007;24008;24009;24010 24008 10 DVNQQEFVRALAAFLKK Unmodified 1976.0843 0.084345337 974 P39019 RPS19 40S ribosomal protein S19 yes yes 0 0 0 2 By MS/MS By MS/MS 6 0 2 1 1 78.946 78.931 4 3.3705E-21 25314 20211116_3434_TMUAki_TMT10x_P_F6 162.77 144.63 12189000 18304000 8510.9 20123000 24239000 11293000 11211000 7576700 4333400 5723700 11772000 11349000 17086000 1107000 20269000 22910000 11965000 11841000 7835500 4973400 5666400 11126000 2 2 1 2 2 2 2 2 2 2 2 6398800 9127900 8510.9 10093000 5207800 8056700 5478300 4118600 2123300 2900800 6203200 5958000 8520900 521760 10197000 5000800 8244700 5438800 4349800 2451700 2883300 5857700 1 1 1 1 1 1 1 1 1 1 1 5790400 9175900 0 10031000 19032000 3235900 5733200 3458100 2210100 2822800 5569300 5390800 8565300 585210 10071000 17909000 3720700 6401700 3485700 2521700 2783100 5268500 1 1 0 1 1 1 1 1 1 1 1 2263800000 821600000 1442200000 3506 974 3277 19990;19991 24011;24012 24011 2 DVNVNFEK Unmodified 963.46616 0.46616048 1778 Q15185;Q15185-3;Q15185-4;Q15185-2 PTGES3 Prostaglandin E synthase 3 yes no 0 0 0 0 By MS/MS By MS/MS 3.71 1.03 1 2 2 2 3 4 47.39 47.438 2 0.0004156 14879 20211116_3430_TMUAki_TMT10x_P_F3 142.92 91.068 29948000 42508000 152470 68516000 28447000 27403000 25863000 18946000 21385000 19503000 30893000 27885000 39762000 2458900 67446000 27212000 30262000 26230000 19706000 22289000 19025000 29507000 7 7 4 7 7 7 7 7 7 7 7 13997000 19192000 47893 31291000 16854000 18052000 13159000 8694300 10060000 9162900 13953000 13033000 17953000 1229600 30870000 16069000 18997000 13445000 9326000 10508000 8929600 13339000 3 3 2 3 3 3 3 3 3 3 3 15952000 23317000 104580 37225000 11594000 9351000 12704000 10252000 11326000 10340000 16940000 14852000 21809000 1229300 36576000 11142000 11266000 12785000 10380000 11782000 10095000 16168000 4 4 2 4 4 4 4 4 4 4 4 2079300000 1252800000 826580000 3507 1778 3278 19992;19993;19994;19995;19996;19997;19998 24013;24014;24015;24016;24017;24018;24019;24020 24013 8 DVNVVVVEGGPK Unmodified 1210.6558 0.65575216 212 O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes yes 0 0 0 0 By MS/MS 4 0 1 1 50.563 50.67 3 0.021096 15117 20211116_3442_TMUAki_TMT10x_S_F4 50.897 29.339 1809800 2961200 0 3500800 1680800 1464500 1477600 2259600 2185800 2069300 2634400 1685100 2765200 145690 3502800 1606400 1635400 1531300 2251600 2208600 2028800 2527500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1809800 2961200 0 3500800 1680800 1464500 1477600 2259600 2185800 2069300 2634400 1685100 2765200 145690 3502800 1606400 1635400 1531300 2251600 2208600 2028800 2527500 1 1 0 1 1 1 1 1 1 1 1 170720000 0 170720000 3508 212 3279 19999 24021 24021 1 DVPAVEITHTFWER Unmodified 1698.8366 0.83657007 757 P21397;P21397-2 MAOA Amine oxidase [flavin-containing] A yes no 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 3 1 63.628 63.715 3 1.1078E-19 19137 20211116_3444_TMUAki_TMT10x_S_F5 146.84 132.49 16838000 26446000 239700 25312000 20699000 31924000 21174000 15628000 15388000 16702000 18843000 15679000 24673000 1610700 26001000 19870000 31748000 21274000 16744000 16031000 16267000 18071000 3 3 1 3 3 3 3 3 3 3 3 16838000 26446000 239700 25312000 20699000 31924000 21174000 15628000 15388000 16702000 18843000 15679000 24673000 1610700 26001000 19870000 31748000 21274000 16744000 16031000 16267000 18071000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2480100000 2480100000 0 3509 757 3280 20000;20001;20002;20003 24022;24023;24024;24025 24025 4 DVPGTLLNIALLNLGSSDPSLR Unmodified 2264.2376 0.23761109 756 P21359;P21359-2;P21359-6 NF1 Neurofibromin;Neurofibromin truncated yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 82.264 82.258 3 8.9561E-20 28671 20211116_3429_TMUAki_TMT10x_P_F2 150.91 133.51 1932100 3012300 2465.6 2955600 2112900 2578800 2291000 1827100 1703100 1997500 2177000 1798500 2810600 106310 3013600 2026800 2633500 2296400 1900700 1775100 1943900 2085400 3 3 1 3 3 3 3 3 3 3 3 513790 813380 0 839260 578500 887070 553500 436870 467050 632780 584050 478190 759070 19492 855070 552500 890620 560070 472770 483080 609940 559790 1 1 0 1 1 1 1 1 1 1 1 1418300 2198900 2465.6 2116400 1534400 1691700 1737500 1390200 1236000 1364800 1592900 1320300 2051500 86823 2158500 1474300 1742800 1736300 1427900 1292000 1333900 1525600 2 2 1 2 2 2 2 2 2 2 2 428150000 249510000 178640000 3510 756 3281 20004;20005 24026;24027;24028 24026 3 DVPIDHSDLVADLLK Unmodified 1648.8672 0.8672015 2080 Q7Z460;Q7Z460-3;Q7Z460-2;Q7Z460-4;Q7Z460-5 CLASP1 CLIP-associating protein 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 75.507 75.367 3 0.036925 26372 20211116_3430_TMUAki_TMT10x_P_F3 44.252 20.265 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3511 2080 3282 20006 24029 24029 1 DVPVAEEVSALFAGELNPVAPK Unmodified 2251.1736 0.17361385 120 O14617;O14617-2;O14617-5;O14617-3;O14617-4 AP3D1 AP-3 complex subunit delta-1 yes no 0 0 0 0 By MS/MS By MS/MS 3.55 1.67 4 3 1 1 1 1 3 8 81.663 81.653 3;4 3.4089E-35 27740 20211116_3442_TMUAki_TMT10x_S_F4 182.76 168.3 16172000 26467000 79260 24852000 19070000 20955000 19676000 13853000 13430000 14728000 19398000 15057000 24691000 1367400 25409000 18299000 21429000 19733000 14470000 14147000 14348000 18527000 12 12 6 12 12 12 12 12 12 12 12 6053200 9178800 24811 8779500 5450900 10165000 6498900 4512600 4856700 4962100 6810600 5636200 8563300 503430 9005500 5253600 10143000 6486500 4886800 5082000 4827800 6509400 4 4 1 4 4 4 4 4 4 4 4 10118000 17288000 54449 16073000 13619000 10791000 13177000 9340900 8572900 9766200 12587000 9421100 16127000 863930 16404000 13046000 11286000 13247000 9583000 9065300 9520700 12018000 8 8 5 8 8 8 8 8 8 8 8 3598200000 1148700000 2449400000 3512 120 3283 20007;20008;20009;20010;20011;20012;20013;20014;20015;20016;20017 24030;24031;24032;24033;24034;24035;24036;24037;24038;24039 24036 10 DVQDSLTVSNEAQTAK Unmodified 1704.8166 0.81662249 1192 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 45.672 45.604 3 4.6219E-47 14173 20211116_3430_TMUAki_TMT10x_P_F3 246.34 227.02 4734400 6630300 31580 8981600 9029700 7798100 5238100 4756500 5589700 4431700 6254000 4408500 6195600 480110 8978900 8564600 7948800 5522400 4979900 5694800 4341600 6012500 4 4 3 4 4 4 4 4 4 4 4 3320800 4705600 29607 6318300 7727600 6937600 3958900 3415300 3990900 3239500 4477000 3092200 4396900 362640 6341100 7316500 6950300 4213700 3645000 4075900 3171100 4303800 3 3 2 3 3 3 3 3 3 3 3 1413700 1924700 1973.1 2663200 1302100 860420 1279200 1341200 1598800 1192300 1777000 1316300 1798700 117480 2637800 1248100 998540 1308600 1334900 1618900 1170600 1708700 1 1 1 1 1 1 1 1 1 1 1 657920000 470240000 187680000 3513 1192 3284 20018;20019;20020 24040;24041;24042;24043 24041 4 DVQEIFR Unmodified 905.46068 0.46068117 1665;63 O00148;O00148-2;O00148-3;Q13838;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B no no 0 0 0 0 By MS/MS By MS/MS 4.12 0.781 2 3 3 4 4 48.413 48.507 2 0.0032448 13763 20211116_3431_TMUAki_TMT10x_P_F4 119.41 50.023 9138400 13048000 0 18312000 28774000 24781000 12269000 14581000 16636000 12396000 14239000 8507300 12195000 855110 18407000 27163000 24617000 13443000 15274000 16648000 12197000 13810000 2 2 0 2 2 2 2 2 2 2 2 9138400 13048000 0 18312000 28774000 24781000 12269000 14581000 16636000 12396000 14239000 8507300 12195000 855110 18407000 27163000 24617000 13443000 15274000 16648000 12197000 13810000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3023100000 3023100000 0 3514 63;1665 3285 20021;20022;20023;20024;20025;20026;20027;20028 24044;24045;24046;24047;24048;24049;24050 24045 7 DVQELLTQYTK Unmodified 1336.6874 0.68744622 1286 P61011;P61011-2 SRP54 Signal recognition particle 54 kDa protein yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 70.376 70.305 2;3 4.5796E-08 22220 20211116_3445_TMUAki_TMT10x_S_F6 148.18 106.74 4042000 6883400 91990 6675900 4630400 5491200 4091000 4554000 4352900 4814000 5192900 3763800 6422200 381550 6807500 4428700 5646100 4186000 4685300 4446700 4690900 4983400 2 2 1 2 2 2 2 2 2 2 2 1523600 2554200 91990 2489500 2111100 3212200 1799600 1951100 1708100 1942500 2089400 1419300 2383100 220280 2555000 2021900 3199400 1838800 2047100 1755200 1897500 2003800 1 1 1 1 1 1 1 1 1 1 1 2518300 4329200 0 4186500 2519300 2279000 2291400 2602900 2644800 2871600 3103500 2344400 4039100 161270 4252500 2406800 2446700 2347100 2638200 2691400 2793500 2979700 1 1 0 1 1 1 1 1 1 1 1 875620000 478050000 397570000 3515 1286 3286 20029;20030 24051;24052 24052 2 DVQGTDASLDEELDRVK Unmodified 1888.9014 0.90141475 3148 Q9UJZ1;Q9UJZ1-2 STOML2 Stomatin-like protein 2, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 1.86 0.833 3 2 2 3 4 54.707 54.469 3 2.0038E-93 17944 20211116_3439_TMUAki_TMT10x_S_F1 336.3 298.71 42134000 69570000 445440 80015000 60594000 67327000 43371000 59762000 63070000 52275000 58055000 39232000 64955000 3868700 80701000 57675000 69201000 45504000 60919000 63123000 51363000 56158000 9 9 6 9 9 9 9 9 9 9 9 23741000 36476000 164970 41547000 45793000 53187000 32630000 31743000 34170000 27884000 30661000 22104000 34055000 2149200 42201000 43569000 52984000 33834000 33241000 34570000 27392000 29686000 4 4 2 4 4 4 4 4 4 4 4 18392000 33094000 280470 38468000 14801000 14140000 10742000 28018000 28899000 24391000 27394000 17127000 30900000 1719400 38500000 14106000 16217000 11670000 27678000 28552000 23971000 26473000 5 5 4 5 5 5 5 5 5 5 5 7688400000 4095900000 3592500000 3516 3148 3287 20031;20032;20033;20034;20035;20036;20037 24053;24054;24055;24056;24057;24058;24059;24060;24061 24058 9 DVQIGDIVTVGECRPLSK Unmodified 1985.0252 0.025175478 1348 P62280 RPS11 40S ribosomal protein S11 yes yes 0 0 0 1 By MS/MS By MS/MS 5.56 1.26 1 2 4 7 4 9 9 62.524 62.697 2;3;4 4.0318E-78 18671 20211116_3434_TMUAki_TMT10x_P_F6 281.93 248.71 387470000 623900000 9898400 635350000 420200000 543010000 384220000 379420000 324370000 361480000 436610000 360830000 582200000 40169000 645970000 402500000 555200000 389760000 392490000 336590000 353780000 417700000 24 24 16 24 24 24 24 23 24 23 23 198610000 301640000 6522800 316940000 228560000 365200000 220530000 207820000 169330000 191750000 227480000 184960000 281520000 22200000 322970000 219300000 365530000 222530000 218750000 176570000 187940000 217640000 12 12 9 12 12 12 12 12 12 12 12 188860000 322250000 3375600 318410000 191640000 177810000 163690000 171600000 155040000 169730000 209120000 175870000 300680000 17969000 323000000 183200000 189670000 167230000 173730000 160020000 165850000 200050000 12 12 7 12 12 12 12 11 12 11 11 60534000000 28773000000 31761000000 3517 1348 3288 20038;20039;20040;20041;20042;20043;20044;20045;20046;20047;20048;20049;20050;20051;20052;20053;20054;20055 24062;24063;24064;24065;24066;24067;24068;24069;24070;24071;24072;24073;24074;24075;24076;24077;24078;24079;24080;24081;24082;24083;24084;24085;24086;24087 24070 26 DVQLHLER Unmodified 1008.5352 0.53524309 1845 Q16514;Q16514-2 TAF12 Transcription initiation factor TFIID subunit 12 yes no 0 0 0 0 By MS/MS 3 0 1 1 35.116 34.876 3 0.0045444 10964 20211116_3441_TMUAki_TMT10x_S_F3 80.231 43.836 368330 585190 0 604800 412120 353430 423160 360550 375540 380110 478320 342920 546120 27600 611850 395210 375720 427180 366810 387780 370430 458240 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 368330 585190 0 604800 412120 353430 423160 360550 375540 380110 478320 342920 546120 27600 611850 395210 375720 427180 366810 387780 370430 458240 1 1 0 1 1 1 1 1 1 1 1 62242000 0 62242000 3518 1845 3289 20056 24088 24088 1 DVQTALALAK Unmodified 1028.5866 0.58660996 2598 Q99714;Q99714-2 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 58.604 58.809 2 4.5949E-06 17403 20211116_3445_TMUAki_TMT10x_S_F6 141.95 89.959 24712000 40746000 190180 43311000 33833000 36296000 25848000 28530000 29324000 27411000 32120000 23010000 38030000 2259200 43899000 32245000 37234000 26744000 29366000 29779000 26817000 30898000 6 6 3 6 6 6 6 6 6 6 6 11330000 17958000 152440 19775000 19198000 23545000 13131000 12900000 13497000 12343000 14563000 10550000 16763000 1154700 20102000 18262000 23514000 13648000 13636000 13753000 12078000 14015000 3 3 2 3 3 3 3 3 3 3 3 13382000 22788000 37741 23536000 14635000 12751000 12717000 15630000 15827000 15068000 17557000 12460000 21267000 1104500 23797000 13983000 13720000 13096000 15730000 16026000 14739000 16883000 3 3 1 3 3 3 3 3 3 3 3 1187000000 273180000 913850000 3519 2598 3290 20057;20058;20059 24089;24090;24091;24092;24093;24094 24093 6 DVRPYIVGAVVR Unmodified 1342.7721 0.77211932 2188 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0 3 2 1 49.842 49.713 3 6.8646E-08 15444 20211116_3429_TMUAki_TMT10x_P_F2 113.07 78.682 1050700 1887700 2843.4 1864400 1130500 1176700 1087200 1931500 1934700 1706800 1870700 978370 1761300 90881 1893300 1083000 1258100 1131300 1919000 1928900 1676200 1806500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1050700 1887700 2843.4 1864400 1130500 1176700 1087200 1931500 1934700 1706800 1870700 978370 1761300 90881 1893300 1083000 1258100 1131300 1919000 1928900 1676200 1806500 1 1 1 1 1 1 1 1 1 1 1 156390000 0 156390000 3520 2188 3291 20060;20061;20062 24095;24096;24097 24095 3 DVSELTGFPEMLGGR Oxidation (M) 1622.761 0.76102187 892 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 1 0 By MS/MS By MS/MS 4 0.816 4 4 4 6 6 67.007 66.933 2;3 1.0077E-13 23020 20211116_3430_TMUAki_TMT10x_P_F3 127.37 96.298 30884000 52642000 206160 47308000 38316000 54322000 37087000 41124000 39979000 41190000 44166000 28755000 49101000 2583500 48744000 36703000 54610000 37773000 42480000 40693000 40225000 42476000 13 13 5 13 13 13 13 13 13 13 13 18693000 30813000 82869 27799000 20836000 39209000 23157000 23340000 22610000 23291000 25266000 17404000 28740000 1447600 28743000 20029000 38883000 23351000 24530000 23120000 22750000 24291000 8 8 2 8 8 8 8 8 8 8 8 12191000 21829000 123290 19509000 17479000 15113000 13930000 17784000 17369000 17899000 18900000 11351000 20361000 1135900 20001000 16674000 15727000 14422000 17950000 17574000 17476000 18184000 5 5 3 5 5 5 5 5 5 5 5 6067800000 3486000000 2581800000 3521 892 3292 20063;20064;20065;20066;20067;20068;20069;20070;20071;20072;20073;20074 24098;24099;24100;24101;24102;24103;24104;24105;24106;24107;24108;24109;24110;24111;24112;24113 24100 1083 16 DVSELTGFPEMLGGR Unmodified 1606.7661 0.76610724 892 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 By MS/MS By MS/MS 4.83 0.687 2 3 1 3 3 77.07 77.061 2 3.4369E-33 25897 20211116_3442_TMUAki_TMT10x_S_F4 223.08 192.69 14098000 22493000 0 21942000 16862000 14430000 15530000 9165600 7682100 10233000 15754000 13125000 20987000 977450 22311000 16120000 15045000 15580000 9616600 8445100 9949700 14948000 3 3 0 3 3 3 3 3 3 3 3 3860800 6266500 0 6009200 3770300 5573200 4347600 2639200 2430200 3204900 4333300 3594500 5846300 280680 6142000 3627200 5638600 4320400 2848300 2623800 3106800 4121300 1 1 0 1 1 1 1 1 1 1 1 10237000 16227000 0 15933000 13092000 8856500 11183000 6526400 5251900 7027700 11421000 9530400 15140000 696770 16169000 12493000 9406600 11259000 6768200 5821300 6842900 10826000 2 2 0 2 2 2 2 2 2 2 2 3093800000 1484100000 1609700000 3522 892 3292 20075;20076;20077;20078;20079;20080 24114;24115;24116;24117 24116 4 DVSGPMPDSYSPR Oxidation (M) 1422.6085 0.60854397 820 P26640 VARS Valine--tRNA ligase yes yes 0 0 1 0 By MS/MS 3 0 1 1 34.402 34.381 2 0.00062904 9702 20211116_3430_TMUAki_TMT10x_P_F3 83.883 70.53 41022 61553 0 110310 148380 97757 66192 36846 37579 32928 68355 38190 57617 2274.9 108900 140160 98994 70553 40419 40574 32320 64987 2 2 0 2 2 2 2 2 2 2 2 41022 61553 0 110310 148380 97757 66192 36846 37579 32928 68355 38190 57617 2274.9 108900 140160 98994 70553 40419 40574 32320 64987 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1495500 1495500 0 3523 820 3293 20081 24118;24119 24118 982 2 DVSGPMPDSYSPR Unmodified 1406.6136 0.61362935 820 P26640 VARS Valine--tRNA ligase yes yes 0 0 0 0 By MS/MS 3 0 1 1 39.655 39.708 2 1.1359E-35 11793 20211116_3430_TMUAki_TMT10x_P_F3 259.35 224.96 113270 173950 4902.3 257750 423380 267350 164360 97633 111380 91838 158840 105500 162620 18303 257170 399740 267950 178620 107660 117310 89932 151760 1 1 1 1 1 1 1 1 1 1 1 113270 173950 4902.3 257750 423380 267350 164360 97633 111380 91838 158840 105500 162620 18303 257170 399740 267950 178620 107660 117310 89932 151760 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21157000 21157000 0 3524 820 3293 20082 24120 24120 1 DVTEAEQAEEQARQEEQVVR Unmodified 2343.0939 0.093859983 1563 Q12788 TBL3 Transducin beta-like protein 3 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 47.22 47.099 3 3.1459E-135 14842 20211116_3439_TMUAki_TMT10x_S_F1 392.38 378.93 10069000 19297000 126110 20731000 15987000 20057000 11930000 16030000 15370000 15109000 15156000 9375600 18012000 992050 21038000 15232000 20384000 12420000 16474000 15478000 14794000 14627000 6 6 3 6 6 6 6 6 6 6 6 5953700 11649000 106270 11992000 12933000 16952000 9776600 9386900 9335700 9508700 8541100 5544100 10871000 661340 12283000 12326000 16794000 10068000 9929400 9488600 9281700 8263900 3 3 1 3 3 3 3 3 3 3 3 4115100 7648700 19838 8739300 3054400 3105200 2153800 6643200 6034100 5600000 6615400 3831600 7141200 330710 8754200 2906300 3590400 2351900 6544600 5989500 5512200 6363600 3 3 2 3 3 3 3 3 3 3 3 3014900000 1997000000 1017900000 3525 1563 3294 20083;20084 24121;24122;24123;24124;24125;24126 24124 6 DVTGAEALLER Unmodified 1172.6037 0.60371659 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.25 0.829 1 1 2 2 2 54.919 54.532 2 0.00019228 17935 20211116_3430_TMUAki_TMT10x_P_F3 87.789 72.153 6032300 9623500 200040 12247000 5378900 5425900 4645800 6832200 6543100 7079700 8186100 5618200 8989600 677400 12207000 5151200 5979900 4809500 6882900 6631800 6904200 7846000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6032300 9623500 200040 12247000 5378900 5425900 4645800 6832200 6543100 7079700 8186100 5618200 8989600 677400 12207000 5151200 5979900 4809500 6882900 6631800 6904200 7846000 1 1 1 1 1 1 1 1 1 1 1 250010000 0 250010000 3526 1663 3295 20085;20086;20087;20088 24127;24128;24129;24130 24128 4 DVTNNVHYENYR Unmodified 1522.6801 0.68006943 1838 Q16181;Q16181-2 SEPT7 Septin-7 yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 32.672 32.525 3 8.6042E-10 10000 20211116_3441_TMUAki_TMT10x_S_F3 157.52 141.76 1173100 1898900 0 2312700 3615400 2373300 1536200 1659000 1836300 1414900 1824700 1092100 1773400 110820 2331100 3413000 2398000 1676300 1715500 1854500 1391900 1760600 3 3 0 3 3 3 3 3 3 3 3 972510 1552300 0 1832000 3391600 2191100 1336500 1346900 1441500 1170200 1437900 905340 1449500 94160 1854500 3199100 2191000 1466300 1406700 1461700 1150100 1387200 2 2 0 2 2 2 2 2 2 2 2 200630 346570 0 480780 223730 182210 199750 312100 394780 244700 386850 186810 323890 16661 476530 213910 206960 209910 308750 392810 241760 373430 1 1 0 1 1 1 1 1 1 1 1 170070000 136270000 33792000 3527 1838 3296 20089;20090;20091 24131;24132;24133 24133 3 DVVEPLLRPQWYVR Unmodified 1768.9624 0.96243929 820 P26640 VARS Valine--tRNA ligase yes yes 0 0 0 1 By MS/MS By MS/MS 5 3.29 2 1 2 2 3 65.393 65.361 3 9.8896E-24 20309 20211116_3428_TMUAki_TMT10x_P_F1 192.39 163.05 18982000 30435000 186510 34355000 20760000 20202000 19418000 13201000 12098000 13734000 20676000 17675000 28414000 1719700 34559000 19880000 21296000 19540000 13791000 12932000 13391000 19680000 5 5 3 5 5 5 5 5 5 5 5 7700200 12441000 52066 13760000 9437300 11656000 9166300 4746800 4298500 5016900 7881300 7169600 11614000 660130 13913000 9041900 11848000 9161300 5183000 4713100 4888600 7491900 2 2 1 2 2 2 2 2 2 2 2 11282000 17994000 134450 20594000 11323000 8546600 10252000 8454400 7799600 8716800 12795000 10506000 16800000 1059600 20646000 10838000 9447800 10379000 8608300 8219300 8502500 12188000 3 3 2 3 3 3 3 3 3 3 3 2222000000 1105100000 1116900000 3528 820 3297 20092;20093;20094;20095;20096 24134;24135;24136;24137;24138;24139 24134 6 DVVICPDASLEDAKK Unmodified 1658.8185 0.81853675 2578 Q99497 PARK7 Protein deglycase DJ-1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.42 1.38 2 1 2 4 3 5 7 53.362 53.404 3;4 4.0219E-19 15687 20211116_3431_TMUAki_TMT10x_P_F4 160.47 136.28 79817000 120410000 512430 170170000 143610000 128950000 85463000 117390000 129760000 99217000 120210000 74319000 112540000 7694000 169470000 136250000 133650000 91100000 119390000 129730000 97649000 116260000 15 15 9 15 15 15 15 15 15 15 15 37379000 52421000 182560 74204000 111970000 99242000 54943000 52993000 56863000 44463000 53759000 34804000 48996000 4233000 74536000 105930000 98517000 58772000 55959000 57654000 43776000 51956000 8 8 5 8 8 8 8 8 8 8 8 42438000 67985000 329880 95962000 31638000 29706000 30521000 64393000 72893000 54754000 66449000 39515000 63542000 3461000 94930000 30314000 35129000 32329000 63432000 72073000 53873000 64301000 7 7 4 7 7 7 7 7 7 7 7 12369000000 7143000000 5225900000 3529 2578 3298 20097;20098;20099;20100;20101;20102;20103;20104;20105;20106;20107;20108 24140;24141;24142;24143;24144;24145;24146;24147;24148;24149;24150;24151;24152;24153;24154 24141 15 DVVILGR Unmodified 770.46504 0.46503826 270 O60502;O60502-4;O60502-2 MGEA5 Protein O-GlcNAcase yes no 0 0 0 0 By MS/MS 4 0 1 1 43.857 44.072 2 0.1084 12366 20211116_3442_TMUAki_TMT10x_S_F4 57.471 11.589 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3530 270 3299 20109 24155 24155 1 DVVQAYPEVR Unmodified 1174.5982 0.59823728 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 40.221 40.274 2 0.00014093 13504 20211116_3441_TMUAki_TMT10x_S_F3 93.058 63.248 333530 526510 8867.5 566280 719320 640460 421840 353060 442370 367120 432870 310620 491440 41320 576000 682780 641430 444080 373900 448800 357970 417870 1 1 1 1 1 1 1 1 1 1 1 333530 526510 8867.5 566280 719320 640460 421840 353060 442370 367120 432870 310620 491440 41320 576000 682780 641430 444080 373900 448800 357970 417870 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31399000 31399000 0 3531 1546 3300 20110;20111 24156;24157 24157 2 DVVVQHVHFDGLGR Unmodified 1576.811 0.81102402 3310 Q9Y512 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 0 0 0 0 By MS/MS 4 0 1 1 43.52 43.735 4 0.022009 12271 20211116_3442_TMUAki_TMT10x_S_F4 47.774 36.065 807970 1247800 9212.5 1283400 959580 871370 923870 984230 953290 877460 1226600 752370 1164500 77695 1300600 919750 915650 939900 991800 978220 861370 1174800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 807970 1247800 9212.5 1283400 959580 871370 923870 984230 953290 877460 1226600 752370 1164500 77695 1300600 919750 915650 939900 991800 978220 861370 1174800 1 1 1 1 1 1 1 1 1 1 1 216270000 0 216270000 3532 3310 3301 20112 24158 24158 1 DVWGIEGPIDAAFTR Unmodified 1645.81 0.81002097 56 CON__Q3ZBS7 no no 0 0 0 0 By MS/MS By MS/MS 3.87 1.36 1 1 4 4 3 2 6 9 78.62 78.599 2;3 6.5621E-38 26514 20211116_3442_TMUAki_TMT10x_S_F4 252.96 218.42 + 25541000 57716000 191450 40593000 38761000 43130000 36117000 20441000 19783000 29373000 38036000 23781000 53791000 2228200 42659000 37094000 43271000 36268000 22195000 21488000 28319000 36127000 8 8 4 8 8 8 8 8 8 8 8 12615000 25978000 3163.8 19593000 17256000 24061000 19555000 10414000 10183000 14375000 18295000 11744000 24217000 921760 20506000 16592000 23929000 19425000 11396000 11058000 13876000 17397000 4 4 1 4 4 4 4 4 4 4 4 12926000 31738000 188280 21000000 21504000 19069000 16563000 10027000 9599800 14998000 19741000 12036000 29575000 1306400 22153000 20503000 19342000 16843000 10800000 10431000 14443000 18730000 4 4 3 4 4 4 4 4 4 4 4 6547500000 2911000000 3636500000 3533 56 3302 20113;20114;20115;20116;20117;20118;20119;20120;20121;20122;20123;20124;20125;20126;20127 24159;24160;24161;24162;24163;24164;24165;24166;24167;24168;24169 24166 11 DVYDKVDYLSSLGK Unmodified 1600.7985 0.79845323 1700 Q14254 FLOT2 Flotillin-2 yes yes 0 0 0 1 By MS/MS 7 0 1 1 69.974 70.251 3 0.0016451 24183 20211116_3446_TMUAki_TMT10x_S_F7 68.845 49.006 5383800 10386000 41468 10083000 6197000 5694100 6006400 5552600 5565000 6327200 6622800 5013100 9690200 496390 10242000 5939700 6068300 6088800 5675900 5718200 6147600 6356000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5383800 10386000 41468 10083000 6197000 5694100 6006400 5552600 5565000 6327200 6622800 5013100 9690200 496390 10242000 5939700 6068300 6088800 5675900 5718200 6147600 6356000 1 1 1 1 1 1 1 1 1 1 1 456670000 0 456670000 3534 1700 3303 20128 24170 24170 1 DVYKEHFQDDVFNEK Unmodified 1911.8639 0.86390703 1031 P43490 NAMPT Nicotinamide phosphoribosyltransferase yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 50.455 50.62 4 5.6981E-07 14881 20211116_3433_TMUAki_TMT10x_P_F5 117.4 95.559 9694100 17538000 0 14468000 15109000 19132000 12005000 23472000 23726000 19932000 18916000 9025500 16354000 794630 15047000 14404000 19300000 12702000 23539000 23454000 19613000 18397000 4 4 0 4 4 4 4 4 4 4 4 3158500 5907500 0 4715700 8015300 11798000 6232900 8259200 8248500 6520500 5872400 2940400 5507900 264740 5000900 7636400 11503000 6477900 8524000 8218900 6439900 5738500 2 2 0 2 2 2 2 2 2 2 2 6535500 11631000 0 9752600 7093800 7333700 5772100 15212000 15478000 13412000 13044000 6085100 10846000 529880 10046000 6767400 7797300 6224500 15015000 15235000 13173000 12658000 2 2 0 2 2 2 2 2 2 2 2 1183100000 745690000 437440000 3535 1031 3304 20129;20130;20131;20132 24171;24172;24173;24174 24171 4 DVYLSPR Unmodified 848.43922 0.43921744 969 P38159;P38159-2;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 yes no 0 0 0 0 By MS/MS By MS/MS 3.6 1.11 1 5 2 1 1 6 4 33.982 33.987 2 0.004389 9383 20211116_3431_TMUAki_TMT10x_P_F4 113.7 27.61 7143500 11948000 122370 13119000 12495000 11959000 8647800 10666000 11287000 9598100 11386000 6652100 11153000 773410 13284000 11891000 12225000 9054700 10878000 11371000 9418000 10981000 14 14 12 14 14 14 14 14 14 14 14 3290900 5279400 88995 5741900 8223800 8209500 4878400 4650000 4873500 4170200 4854400 3064800 4928000 424520 5861900 7806600 8131100 5123200 4893000 4957500 4092600 4683400 8 8 7 8 8 8 8 8 8 8 8 3852600 6668800 33379 7377400 4271600 3749200 3769300 6016100 6413400 5427900 6531800 3587400 6225300 348890 7421900 4084700 4094100 3931500 5984700 6413000 5325400 6297300 6 6 5 6 6 6 6 6 6 6 6 483750000 323810000 159940000 3536 969 3305 20133;20134;20135;20136;20137;20138;20139;20140;20141;20142 24175;24176;24177;24178;24179;24180;24181;24182;24183;24184;24185;24186;24187;24188 24181 14 DVYVQLYLQHLTAR Unmodified 1717.9152 0.91515474 1006;1007 P42166;P42167;P42167-2;P42167-3 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 69.652 69.343 3 4.8887E-15 23442 20211116_3429_TMUAki_TMT10x_P_F2 159.18 145.02 8596400 14393000 94714 14054000 11004000 10538000 10342000 8825000 8201100 9210800 11222000 8004700 13429000 819000 14309000 10539000 10914000 10458000 9070600 8544100 8979900 10732000 4 4 3 4 4 4 4 4 4 4 4 2397700 3606600 9721.2 3422300 2601400 4051100 2662000 2449200 1900200 2196000 2928400 2232600 3364600 210700 3513700 2496500 4052200 2673400 2563500 2003000 2155200 2793100 1 1 1 1 1 1 1 1 1 1 1 6198700 10787000 84992 10632000 8402200 6486800 7679800 6375700 6300900 7014800 8293600 5772100 10065000 608310 10796000 8042400 6861500 7785000 6507100 6541100 6824700 7938800 3 3 2 3 3 3 3 3 3 3 3 1827300000 837730000 989520000 3537 1006;1007 3306 20143;20144;20145;20146 24189;24190;24191;24192;24193 24189 5 DWEMHVHFK Oxidation (M) 1243.5444 0.54442757 1577 Q12907 LMAN2 Vesicular integral-membrane protein VIP36 yes yes 0 0 1 0 By MS/MS 5.5 0.5 1 1 2 39.944 40.087 4 0.037801 9733 20211116_3444_TMUAki_TMT10x_S_F5 46.891 30.667 420460 685410 2958.3 829650 380700 303840 341910 514280 450600 403360 583640 391510 640100 37059 828330 364240 346700 352210 508940 458370 398510 558900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 420460 685410 2958.3 829650 380700 303840 341910 514280 450600 403360 583640 391510 640100 37059 828330 364240 346700 352210 508940 458370 398510 558900 1 1 1 1 1 1 1 1 1 1 1 83500000 0 83500000 3538 1577 3307 20147;20148 24194 24194 2137 1 DWILPSDYDHAEAEAR Unmodified 1886.8435 0.84350594 252 O43852;O43852-3;O43852-4;O43852-2;O43852-15;O43852-5;O43852-9 CALU Calumenin yes no 0 0 0 0 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 3 4 56.608 56.405 3 3.9436E-07 16633 20211116_3428_TMUAki_TMT10x_P_F1 102.08 88.368 316100000 577210000 31299000 601650000 472070000 732660000 474420000 873130000 819110000 798800000 703820000 294560000 538690000 57561000 614020000 454600000 741460000 491770000 878420000 814130000 783210000 682520000 11 11 11 11 11 11 11 11 11 11 11 103930000 174070000 4138100 182400000 231950000 387360000 203130000 275550000 255610000 233730000 206850000 96798000 162460000 14266000 188550000 221930000 379460000 209180000 284550000 256010000 229990000 201050000 5 5 5 5 5 5 5 5 5 5 5 212170000 403140000 27161000 419260000 240120000 345310000 271290000 597580000 563500000 565070000 496970000 197760000 376230000 43295000 425470000 232670000 362010000 282590000 593880000 558120000 553220000 481470000 6 6 6 6 6 6 6 6 6 6 6 6275500000 2883400000 3392200000 3539 252 3308 20149;20150;20151;20152;20153;20154;20155 24195;24196;24197;24198;24199;24200;24201;24202 24196 8 DWNTLIVGK Unmodified 1044.5604 0.56039521 128 O14744;O14744-2;O14744-4 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 65.871 66.378 2 0.0010652 22056 20211116_3435_TMUAki_TMT10x_P_F7 103.88 61.899 20771000 32341000 110790 34354000 27794000 33471000 27394000 16032000 15339000 18689000 24468000 19341000 30185000 1923700 34891000 26647000 33760000 27434000 17260000 16457000 18143000 23320000 3 3 3 3 3 3 3 3 3 3 3 15189000 22511000 73724 23970000 22340000 28344000 21437000 11315000 11075000 13286000 17494000 14143000 21011000 1428100 24416000 21403000 28222000 21471000 12423000 11948000 12894000 16677000 2 2 2 2 2 2 2 2 2 2 2 5582200 9830500 37069 10384000 5453800 5126900 5956300 4717300 4264400 5403000 6973400 5197800 9174900 495550 10475000 5244200 5538000 5963100 4837500 4508500 5248600 6643200 1 1 1 1 1 1 1 1 1 1 1 873540000 473300000 400240000 3540 128 3309 20156;20157 24203;24204;24205 24203 3 DWRPAITIK Unmodified 1098.6186 0.61857879 1408 P63279 UBE2I SUMO-conjugating enzyme UBC9 yes yes 0 0 0 1 By MS/MS By MS/MS 2.8 2.64 2 2 1 3 2 51.225 50.998 3 0.00021082 14700 20211116_3440_TMUAki_TMT10x_S_F2 124.67 89.4 17277000 23916000 289970 43146000 17825000 12164000 14354000 5915100 5449300 6880200 16033000 16088000 22388000 1653700 42194000 17018000 14162000 14466000 6358300 6308900 6679800 15139000 3 3 2 3 3 3 3 3 3 3 3 5856200 7389200 223400 14045000 12417000 6932000 6692500 1691800 1807800 2439600 5389800 5454300 6919700 785610 13752000 11775000 7382900 6936600 2006900 2180000 2351800 5088500 1 1 1 1 1 1 1 1 1 1 1 11420000 16527000 66569 29101000 5408600 5231700 7661300 4223400 3641400 4440600 10643000 10634000 15469000 868070 28442000 5243000 6779400 7528900 4351400 4128900 4328000 10051000 2 2 1 2 2 2 2 2 2 2 2 1128000000 434500000 693540000 3541 1408 3310 20158;20159;20160;20161;20162 24206;24207;24208;24209;24210 24210 5 DWVCALGVVPDHPVLLSGCR Unmodified 2249.1085 0.10852795 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4;Q7Z4S6-6 KIF21A Kinesin-like protein KIF21A yes no 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 76.619 76.623 3 6.5164E-19 25010 20211116_3436_TMUAki_TMT10x_P_F8 157.51 142.36 5812400 9907300 36021 8562000 5360800 9954900 6749100 6009900 5100800 5765500 6924900 5411500 9239600 417490 8850500 5171300 9966800 6722200 6302200 5326000 5640900 6623700 2 2 1 2 2 2 2 2 2 2 2 5812400 9907300 36021 8562000 5360800 9954900 6749100 6009900 5100800 5765500 6924900 5411500 9239600 417490 8850500 5171300 9966800 6722200 6302200 5326000 5640900 6623700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1441200000 1441200000 0 3542 2082 3311 20163;20164;20165 24211;24212;24213 24212 3 DWVLNEFK Unmodified 1049.5182 0.51819605 710 P17844;P17844-2 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 70.572 70.53 2 0.0014247 21893 20211116_3434_TMUAki_TMT10x_P_F6 122.13 89.914 25712000 45307000 93940 44910000 28740000 28544000 29533000 23091000 20304000 24214000 31567000 23940000 42274000 2199700 45599000 27579000 29966000 29629000 23786000 21459000 23602000 30103000 4 4 1 4 4 4 4 4 4 4 4 6320100 10328000 0 10905000 8443600 10996000 8756600 4116900 3722100 4651100 7170700 5884600 9638800 541270 11086000 8103200 11042000 8709900 4549000 4129300 4520500 6810600 1 1 0 1 1 1 1 1 1 1 1 19392000 34979000 93940 34005000 20296000 17548000 20776000 18974000 16582000 19563000 24396000 18056000 32636000 1658500 34513000 19475000 18924000 20919000 19237000 17330000 19082000 23292000 3 3 1 3 3 3 3 3 3 3 3 1450800000 526990000 923810000 3543 710 3312 20166;20167;20168;20169 24214;24215;24216;24217;24218 24215 5 DYAFIHFDER Unmodified 1311.5884 0.58840088 271;272 O60506;O60506-2;O60506-3;O60506-4;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 0 By MS/MS By MS/MS 3 1.41 2 2 2 2 2 5 5 53.721 53.621 3 3.6491E-05 18578 20211116_3441_TMUAki_TMT10x_S_F3 123.62 110.42 18014000 29863000 65301 32715000 22133000 27110000 19041000 25497000 24798000 22366000 25245000 16772000 27876000 1259700 33090000 21141000 27927000 19654000 25911000 24992000 21973000 24340000 8 8 4 8 8 8 8 8 8 8 8 7301200 10829000 0 12594000 12152000 17099000 9119200 9503400 9301200 8465800 9476100 6797300 10112000 563290 12791000 11569000 16971000 9414200 10015000 9460600 8310900 9135800 3 3 0 3 3 3 3 3 3 3 3 10713000 19033000 65301 20121000 9980900 10011000 9921300 15994000 15497000 13900000 15769000 9975100 17764000 696430 20299000 9572600 10957000 10239000 15897000 15531000 13662000 15204000 5 5 4 5 5 5 5 5 5 5 5 4332800000 2114600000 2218200000 3544 271;272 3313 20170;20171;20172;20173;20174;20175;20176;20177;20178;20179 24219;24220;24221;24222;24223;24224;24225;24226;24227 24225 9 DYAFIHFDERDGAVK Unmodified 1781.8373 0.83729835 271;272 O60506;O60506-2;O60506-3;O60506-4;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 1 By MS/MS By MS/MS 4 1.54 1 1 2 2 3 2 7 4 53.317 53.32 3;4 3.8863E-24 15664 20211116_3431_TMUAki_TMT10x_P_F4 194.01 172.76 41426000 66678000 556200 81968000 52658000 57945000 40682000 45109000 44581000 42412000 50712000 38572000 62275000 3725800 82182000 50198000 60224000 42012000 46431000 45401000 41533000 48731000 11 11 7 11 11 11 11 11 11 11 11 19385000 31452000 258700 39032000 29530000 41268000 22558000 21357000 22362000 20240000 23249000 18050000 29376000 1793300 39317000 28142000 41455000 23240000 22686000 22790000 19814000 22400000 6 6 3 6 6 6 6 6 6 6 6 22040000 35226000 297500 42936000 23128000 16677000 18124000 23752000 22219000 22171000 27464000 20522000 32899000 1932500 42865000 22056000 18768000 18772000 23745000 22611000 21719000 26331000 5 5 4 5 5 5 5 5 5 5 5 10494000000 5717200000 4776900000 3545 271;272 3314 20180;20181;20182;20183;20184;20185;20186;20187;20188;20189;20190 24228;24229;24230;24231;24232;24233;24234;24235;24236;24237;24238;24239 24231 12 DYAFVHFEDR Unmodified 1297.5728 0.57275081 211 O43390;O43390-2;O43390-3;O43390-4 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 0 By MS/MS By MS/MS 3.33 1.4 2 2 4 4 2 1 7 8 49.15 49.102 2;3 4.6885E-09 13189 20211116_3444_TMUAki_TMT10x_S_F5 128.01 105.48 30025000 45795000 95556 55856000 38389000 42567000 29962000 34698000 33166000 32414000 38720000 27954000 42769000 2248700 56073000 36574000 44007000 30931000 35607000 33797000 31751000 37180000 17 17 4 17 17 17 17 17 17 17 17 15879000 22431000 31471 28489000 24533000 30446000 17319000 16505000 15606000 16090000 18927000 14783000 20953000 1154300 28665000 23323000 30583000 17891000 17473000 16069000 15732000 18155000 8 8 2 8 8 8 8 8 8 8 8 14147000 23364000 64085 27367000 13856000 12121000 12643000 18193000 17560000 16323000 19793000 13171000 21816000 1094400 27409000 13250000 13425000 13040000 18135000 17728000 16019000 19024000 9 9 2 9 9 9 9 9 9 9 9 12603000000 7528300000 5075000000 3546 211 3315 20191;20192;20193;20194;20195;20196;20197;20198;20199;20200;20201;20202;20203;20204;20205 24240;24241;24242;24243;24244;24245;24246;24247;24248;24249;24250;24251;24252;24253;24254;24255;24256;24257;24258;24259 24258 20 DYAFVHMEK Oxidation (M) 1154.5066 0.50664508 2534 Q96PK6;Q96PK6-2 RBM14 RNA-binding protein 14 yes no 0 0 1 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 37.381 37.443 3 0.0080158 9723 20211116_3433_TMUAki_TMT10x_P_F5 61.65 44.71 3141100 4998700 89615 6037600 7804100 5796600 3963700 3395900 3773700 3210300 4601500 2925300 4668200 409240 6082400 7391800 5866100 4215500 3568300 3876800 3143000 4413200 3 3 3 3 3 3 3 3 3 3 3 2587700 4060400 79681 4979100 7248200 5332100 3418600 2676400 3032600 2610400 3660900 2410000 3792200 354070 5019900 6858500 5350500 3656000 2853200 3124400 2552200 3512100 2 2 2 2 2 2 2 2 2 2 2 553390 938390 9934.2 1058500 555910 464530 545070 719500 741120 599880 940560 515330 876060 55173 1062500 533360 515600 559520 715090 752460 590810 901150 1 1 1 1 1 1 1 1 1 1 1 202280000 182350000 19930000 3547 2534 3316 20206;20207;20208 24260;24261;24262 24261 2787 3 DYAFVHMEK Unmodified 1138.5117 0.51173046 2534 Q96PK6;Q96PK6-2 RBM14 RNA-binding protein 14 yes no 0 0 0 0 By MS/MS 5 0 1 1 46.675 46.839 3 0.01527 12247 20211116_3444_TMUAki_TMT10x_S_F5 63.283 47.393 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3548 2534 3316 20209 24263 24263 1 DYAFVHMER Unmodified 1166.5179 0.51787847 2707 Q9BWF3;Q9BWF3-3;Q9BWF3-4;Q9BWF3-2;Q9BQ04 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 39.942 39.922 3 0.00074489 10747 20211116_3442_TMUAki_TMT10x_S_F4 90.827 79.954 1530100 2292200 24023 2677800 1406100 1288500 1358100 1332800 1273000 1282400 1790700 1424800 2140300 143510 2683800 1348200 1399400 1377500 1351400 1317200 1254500 1711400 3 3 2 3 3 3 3 3 3 3 3 220190 308170 15913 351290 316450 375220 267190 217780 219000 221070 252710 205140 287710 34434 355680 303150 377230 272100 229460 226100 215780 242740 1 1 1 1 1 1 1 1 1 1 1 1309900 1984100 8110.1 2326500 1089600 913310 1090900 1115000 1054000 1061300 1538000 1219700 1852600 109080 2328100 1045000 1022100 1105400 1121900 1091100 1038700 1468600 2 2 1 2 2 2 2 2 2 2 2 205030000 23085000 181940000 3549 2707 3317 20210;20211;20212 24264;24265;24266 24266 3 DYAFVHMER Oxidation (M) 1182.5128 0.51279309 2707 Q9BWF3;Q9BWF3-3;Q9BWF3-4;Q9BWF3-2;Q9BQ04 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 0 0 1 0 By MS/MS By MS/MS 3.75 0.829 2 1 1 1 3 33.076 33.072 3 0.019166 10300 20211116_3441_TMUAki_TMT10x_S_F3 55.353 44.188 597980 1019100 10426 1115900 665140 533080 522480 616750 681090 565860 818340 556850 951310 58770 1122900 634710 580900 542350 621320 690820 554750 785170 3 3 2 3 3 3 3 3 3 3 3 92081 160200 0 158360 133800 161310 92537 72626 75790 104270 104930 85725 149480 6754 161730 127160 162160 95504 79264 78870 100530 100320 1 1 0 1 1 1 1 1 1 1 1 505900 858920 10426 957560 531340 371770 429950 544120 605300 461590 713420 471120 801830 52016 961140 507560 418740 446840 542060 611950 454220 684860 2 2 2 2 2 2 2 2 2 2 2 82687000 2516700 80171000 3550 2707 3317 20213;20214;20215;20216 24267;24268 24267 2910 2 DYAPPPR Unmodified 814.39735 0.39735263 969 P38159;P38159-2;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 29.839 29.592 2 0.0043235 7339 20211116_3429_TMUAki_TMT10x_P_F2 114.02 67.36 873690 1465100 6178.1 1364500 1293700 2099500 1385200 653660 866400 778340 1178600 813520 1366700 82246 1410100 1243000 2061000 1384300 741300 915190 755030 1127200 3 3 2 3 3 3 3 3 3 3 3 475430 780480 2348.8 759910 898660 1381800 795790 382050 479750 445290 653010 442670 728190 45703 785990 859110 1346800 802800 440790 508050 432290 624570 2 2 1 2 2 2 2 2 2 2 2 398260 684640 3829.4 604570 395060 717760 589440 271610 386640 333050 525550 370850 638540 36543 624110 383920 714200 581450 300510 407140 322740 502670 1 1 1 1 1 1 1 1 1 1 1 35817000 12030000 23787000 3551 969 3318 20217;20218 24269;24270;24271 24269 3 DYAPPPRDYTYR Unmodified 1512.6997 0.69974224 969 P38159;P38159-2;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 yes no 0 0 0 1 By MS/MS By MS/MS 3.83 1.07 1 1 2 2 4 2 34.354 34.271 3 2.7346E-08 8220 20211116_3431_TMUAki_TMT10x_P_F4 120.87 79.63 4542700 6928900 35667 9659400 14385000 12220000 6369900 7840700 9855900 6175400 8105900 4229600 6475600 509400 9699600 13591000 12192000 6988200 8143000 9812000 6099800 7873700 6 6 3 6 6 6 6 6 6 6 6 3700900 5454600 20167 7836800 13491000 11356000 5528900 6525900 8400300 5146200 6613200 3445700 5098600 424430 7879200 12734000 11243000 6113400 6837500 8356800 5082900 6434900 4 4 1 4 4 4 4 4 4 4 4 841790 1474300 15500 1822700 894250 864080 840940 1314800 1455600 1029100 1492700 783900 1377000 84970 1820500 857050 949520 874820 1305500 1455300 1016900 1438800 2 2 2 2 2 2 2 2 2 2 2 479980000 328100000 151870000 3552 969 3319 20219;20220;20221;20222;20223;20224 24272;24273;24274;24275;24276;24277;24278;24279 24272 8 DYAVSTVPVADGLHLK Unmodified 1683.8832 0.88318591 382 O94760;O94760-2 DDAH1 N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 59.431 59.548 3 1.4051E-07 18518 20211116_3433_TMUAki_TMT10x_P_F5 110.97 86.118 21256000 33462000 282710 39514000 31386000 33691000 25471000 21639000 19136000 19580000 26674000 19793000 31246000 2157500 39797000 29962000 34410000 25950000 22548000 20013000 19208000 25498000 5 5 4 5 5 5 5 5 5 5 5 14178000 21274000 207980 25486000 23401000 27628000 18723000 14240000 12415000 12747000 17839000 13202000 19867000 1498400 25735000 22333000 27713000 19041000 15110000 13098000 12511000 17041000 3 3 3 3 3 3 3 3 3 3 3 7078000 12188000 74731 14028000 7985400 6062600 6748400 7398500 6721700 6833200 8835200 6590800 11380000 659100 14062000 7629500 6697500 6909000 7438000 6914300 6696900 8457600 2 2 1 2 2 2 2 2 2 2 2 2066900000 1097600000 969340000 3553 382 3320 20225;20226;20227 24280;24281;24282;24283;24284 24280 5 DYDDMSPR Oxidation (M) 1013.376 0.37602484 1329;1330 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 1 0 By MS/MS By MS/MS 1.25 0.433 3 1 2 2 27.855 27.841 2 0.023028 5060 20211116_3428_TMUAki_TMT10x_P_F1 76.478 71.743 168510 292240 1357.9 294170 305030 258560 224720 153970 150050 142610 224040 156910 272700 9365.9 299430 290540 263250 229830 161490 158540 139750 213830 4 4 1 4 4 4 4 4 4 4 4 117080 189090 1357.9 196210 235480 207760 162640 105750 102860 96166 152290 109030 176460 9365.9 199840 224040 208640 166940 112380 109020 94316 145380 2 2 1 2 2 2 2 2 2 2 2 51426 103150 0 97957 69556 50799 62073 48223 47187 46442 71752 47882 96234 0 99595 66505 54601 62894 49106 49528 45431 68456 2 2 0 2 2 2 2 2 2 2 2 8960800 5366500 3594300 3554 1329;1330 3321 20228;20229;20230;20231 24285;24286;24287;24288 24285 1782 4 DYDPVAAR Unmodified 905.4243 0.42429566 1824 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.943 2 1 1 2 33.971 33.732 2 0.0021388 7501 20211116_3428_TMUAki_TMT10x_P_F1 104.75 67.587 375120 674910 0 778140 389010 297980 435850 323900 389830 321900 497920 349260 630150 29630 779360 374070 333760 438230 327950 402430 314470 476980 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 375120 674910 0 778140 389010 297980 435850 323900 389830 321900 497920 349260 630150 29630 779360 374070 333760 438230 327950 402430 314470 476980 1 1 0 1 1 1 1 1 1 1 1 14656000 0 14656000 3555 1824 3322 20232;20233;20234 24289;24290;24291 24289 3 DYDVDHPGEADSVLR Unmodified 1686.7485 0.74854293 2151 Q8IX01;Q8IX01-4;Q8IX01-3 SUGP2 SURP and G-patch domain-containing protein 2 yes no 0 0 0 0 By MS/MS 2 0 1 1 40.69 40.762 3 0.0002988 10460 20211116_3440_TMUAki_TMT10x_S_F2 78.508 64.845 628840 970080 1374.7 1286500 542520 426970 447970 812310 1004700 660440 913560 585520 906370 52207 1277300 517900 496650 476570 801910 994550 651270 884100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 628840 970080 1374.7 1286500 542520 426970 447970 812310 1004700 660440 913560 585520 906370 52207 1277300 517900 496650 476570 801910 994550 651270 884100 1 1 1 1 1 1 1 1 1 1 1 27709000 0 27709000 3556 2151 3323 20235 24292 24292 1 DYEEIGPSICR Unmodified 1337.5922 0.59216562 1296 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 45.986 45.867 2 9.9812E-30 14278 20211116_3430_TMUAki_TMT10x_P_F3 264.3 247.76 9557300 15132000 94310 22214000 8993400 7024400 5824100 8881700 9328900 8485400 11669000 8899300 14146000 848080 21935000 8547800 8134700 6181800 8924700 9420200 8303600 11184000 6 6 4 6 6 6 6 6 6 6 6 1293300 1888400 0 2641800 3388100 2759400 1718400 1403400 1530100 1188100 1494800 1204100 1764900 122300 2643600 3205800 2773400 1824500 1488800 1563600 1169300 1443100 1 1 0 1 1 1 1 1 1 1 1 8264000 13244000 94310 19572000 5605300 4265000 4105700 7478400 7798900 7297200 10174000 7695200 12381000 725780 19291000 5342000 5361300 4357300 7435900 7856600 7134300 9740700 5 5 4 5 5 5 5 5 5 5 5 334600000 111390000 223210000 3557 1296 3324 20236;20237;20238;20239 24293;24294;24295;24296;24297;24298;24299 24294 7 DYEETELISTTANYR Unmodified 1803.8163 0.81628814 1595 Q13123 IK Protein Red yes yes 0 0 0 0 By MS/MS 1 0 1 1 57.457 57.155 3 0.0023778 19010 20211116_3439_TMUAki_TMT10x_S_F1 65.374 41.999 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3558 1595 3325 20240 24300 24300 1 DYEEVGVDSVEGEGEEEGEEY Unmodified 2347.8976 0.89757075 1417;2044 P68363;P68363-2;Q71U36;Q71U36-2 TUBA1B;TUBA1A Tubulin alpha-1B chain;Tubulin alpha-1A chain no no 0 0 0 0 By MS/MS By MS/MS 1.58 0.748 22 10 6 21 17 70.67 70.595 2;3 1.2626E-44 20620 20211116_3428_TMUAki_TMT10x_P_F1 215.5 211.19 87360000 147350000 627270 151380000 93721000 120350000 99395000 74220000 75546000 83634000 102880000 81338000 137510000 4638300 153680000 89985000 123480000 99786000 78071000 78869000 81294000 98400000 54 54 20 54 54 54 54 54 54 54 54 48840000 75348000 96708 84366000 49488000 80646000 55497000 33276000 37152000 42164000 52355000 45470000 70341000 1688300 85375000 47563000 81322000 55411000 36490000 39138000 40814000 50034000 27 27 9 27 27 27 27 27 27 27 27 38520000 72003000 530560 67012000 44232000 39701000 43898000 40944000 38394000 41470000 50526000 35868000 67168000 2950000 68307000 42423000 42157000 44375000 41582000 39731000 40480000 48365000 27 27 11 27 27 27 27 27 27 27 27 98691000000 45379000000 53313000000 3559 1417;2044 3326 20241;20242;20243;20244;20245;20246;20247;20248;20249;20250;20251;20252;20253;20254;20255;20256;20257;20258;20259;20260;20261;20262;20263;20264;20265;20266;20267;20268;20269;20270;20271;20272;20273;20274;20275;20276;20277;20278 24301;24302;24303;24304;24305;24306;24307;24308;24309;24310;24311;24312;24313;24314;24315;24316;24317;24318;24319;24320;24321;24322;24323;24324;24325;24326;24327;24328;24329;24330;24331;24332;24333;24334;24335;24336;24337;24338;24339;24340;24341;24342;24343;24344;24345;24346;24347;24348;24349;24350;24351;24352;24353;24354;24355;24356;24357;24358;24359 24307 59 DYFEEYGK Unmodified 1049.4342 0.43419164 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 53.076 53.097 2 0.0018266 17301 20211116_3430_TMUAki_TMT10x_P_F3 117.04 89.212 4845900 7165000 87441 11273000 11762000 9456500 5194400 7116000 8325100 6282400 7807600 4512700 6701100 580110 11183000 11118000 9693100 5709200 7328300 8314000 6170000 7547700 2 2 2 2 2 2 2 2 2 2 2 2452100 3620800 42086 5706700 10100000 7494000 3544600 3346500 4236800 2873100 3912000 2283500 3386400 349630 5701200 9521800 7431000 3959600 3597700 4268400 2825500 3783800 1 1 1 1 1 1 1 1 1 1 1 2393800 3544200 45355 5566400 1662000 1962400 1649800 3769500 4088300 3409300 3895600 2229200 3314700 230490 5481900 1596000 2262100 1749600 3730600 4045600 3344500 3763900 1 1 1 1 1 1 1 1 1 1 1 664750000 521500000 143250000 3560 772 3327 20279;20280;20281 24360;24361 24360 2 DYFEEYGKIDTIEIITDR Unmodified 2219.0634 0.063394703 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 77.547 77.494 3 8.5023E-06 27209 20211116_3439_TMUAki_TMT10x_S_F1 88.176 79.08 4125100 7929000 0 5460200 4957200 5986700 6082800 6923100 8853100 8328400 6855400 3840600 7389400 311210 5752500 4778700 6087400 6197000 7033800 8814400 8076000 6675000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4125100 7929000 0 5460200 4957200 5986700 6082800 6923100 8853100 8328400 6855400 3840600 7389400 311210 5752500 4778700 6087400 6197000 7033800 8814400 8076000 6675000 1 1 0 1 1 1 1 1 1 1 1 1070600000 0 1070600000 3561 772 3328 20282;20283 24362;24363 24363 2 DYFEQYGK Unmodified 1048.4502 0.45017606 583 P09651;P09651-2;P09651-3;Q32P51 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 0 0 By MS/MS By MS/MS 4.25 1.09 1 2 1 3 1 51.588 51.637 2 0.00043647 15051 20211116_3431_TMUAki_TMT10x_P_F4 140.5 98.522 9553300 13851000 53182 24405000 29493000 20096000 11035000 13634000 22830000 12921000 18171000 8895200 12964000 1094800 24087000 27816000 20593000 12523000 14167000 22544000 12649000 17673000 3 3 2 3 3 3 3 3 3 3 3 5233400 7836900 52639 12628000 27817000 17106000 8351200 7325000 11805000 7112900 9298900 4873000 7330600 773190 12611000 26184000 16931000 9595800 7934900 11769000 6955600 9047900 2 2 1 2 2 2 2 2 2 2 2 4319900 6014400 542.6 11777000 1675600 2989400 2683400 6308900 11025000 5808600 8871900 4022200 5633600 321620 11476000 1632000 3662100 2927400 6232000 10774000 5693600 8625100 1 1 1 1 1 1 1 1 1 1 1 1196000000 827190000 368780000 3562 583 3329 20284;20285;20286;20287 24364;24365;24366;24367 24365 4 DYFFALAHTVR Unmodified 1338.6721 0.67207093 620 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 By MS/MS 1 0 1 1 61.667 61.391 3 0.001845 20724 20211116_3439_TMUAki_TMT10x_S_F1 68.515 48.903 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3563 620 3330 20288 24368 24368 1 DYFGAHTYELLAK Unmodified 1526.7405 0.74054442 1170 P52209;P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 By MS/MS By MS/MS 6.44 1.26 1 1 2 3 2 5 4 61.725 61.936 2;3 6.0256E-18 20702 20211116_3446_TMUAki_TMT10x_S_F7 148.32 115.1 83698000 130470000 755630 170350000 96473000 104780000 97329000 73492000 76836000 81139000 92749000 77928000 121890000 6736400 169990000 92500000 110090000 98046000 76529000 79629000 78929000 88979000 8 8 5 8 8 8 8 8 8 8 8 37110000 62777000 630050 74800000 48238000 68869000 45552000 34912000 35781000 35944000 42490000 34557000 58623000 3746800 75370000 46219000 69761000 46043000 37240000 37066000 35063000 40781000 5 5 3 5 5 5 5 5 5 5 5 46588000 67688000 125590 95553000 48235000 35914000 51777000 38580000 41055000 45195000 50259000 43371000 63264000 2989500 94619000 46281000 40325000 52002000 39289000 42562000 43867000 48198000 3 3 2 3 3 3 3 3 3 3 3 11717000000 7377800000 4339100000 3564 1170 3331 20289;20290;20291;20292;20293;20294;20295;20296;20297 24369;24370;24371;24372;24373;24374;24375;24376;24377 24376 9 DYFNVPYPLPK Unmodified 1351.6812 0.68123863 1246 P55786;P55786-2;A6NEC2;A6NEC2-2 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 0 0 0 0 By MS/MS By MS/MS 7.6 0.49 2 3 2 3 73.533 73.438 2;3 1.727E-07 24992 20211116_3435_TMUAki_TMT10x_P_F7 120.12 101.34 29922000 42435000 982490 38957000 23665000 38841000 29863000 22476000 19782000 23600000 20725000 27868000 39583000 3308800 39987000 22906000 39208000 29655000 23712000 20599000 23003000 19963000 2 2 2 2 2 2 2 2 2 2 2 23675000 32425000 882170 29973000 16443000 32649000 22644000 17372000 14786000 17586000 14767000 22050000 30246000 2683700 30790000 15976000 32753000 22401000 18440000 15385000 17167000 14246000 1 1 1 1 1 1 1 1 1 1 1 6247200 10010000 100320 8984500 7221700 6191600 7219600 5104500 4996200 6014300 5957600 5817500 9336500 625080 9196300 6930500 6455500 7254400 5272000 5214200 5836400 5717300 1 1 1 1 1 1 1 1 1 1 1 2564200000 1399400000 1164700000 3565 1246 3332 20298;20299;20300;20301;20302 24378;24379;24380;24381 24378 4 DYGVLLEGSGLALR Unmodified 1461.7827 0.78274359 862 P30048;P30048-2 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4.86 1.55 2 2 5 4 4 4 10 11 74.614 74.618 2;3 1.6613E-71 24681 20211116_3433_TMUAki_TMT10x_P_F5 316.87 251.62 68752000 120570000 915830 109740000 82933000 101370000 85964000 73578000 72477000 76284000 86682000 64017000 112460000 6208600 112590000 79616000 103160000 86621000 76293000 74827000 74392000 83179000 20 20 12 20 20 20 20 20 20 20 20 34024000 57926000 739200 54800000 34953000 62220000 41190000 37308000 36040000 38461000 42043000 31684000 54040000 3403800 56237000 33709000 62368000 41295000 39224000 37102000 37516000 40371000 11 11 8 11 11 11 11 11 11 11 11 34728000 62644000 176640 54940000 47979000 39155000 44775000 36270000 36437000 37823000 44640000 32333000 58424000 2804800 56356000 45907000 40797000 45326000 37069000 37725000 36876000 42808000 9 9 4 9 9 9 9 9 9 9 9 33959000000 18080000000 15879000000 3566 862 3333 20303;20304;20305;20306;20307;20308;20309;20310;20311;20312;20313;20314;20315;20316;20317;20318;20319;20320;20321;20322;20323 24382;24383;24384;24385;24386;24387;24388;24389;24390;24391;24392;24393;24394;24395;24396;24397;24398;24399;24400;24401;24402;24403;24404 24385 23 DYGVYLEDSGHTLR Unmodified 1623.7529 0.75290002 1605 Q13162 PRDX4 Peroxiredoxin-4 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 48.086 48.018 3 8.1413E-07 15195 20211116_3430_TMUAki_TMT10x_P_F3 116.71 103.28 3478800 5495900 13775 6077600 5143400 6887700 3939300 4520900 4568900 4077700 4821700 3239000 5130500 294220 6171200 4900300 6913500 4078300 4702800 4629500 4000800 4643500 3 3 1 3 3 3 3 3 3 3 3 2149200 3274700 13775 3874700 3867100 5635700 3022900 2922700 2998600 2541000 2942400 2001000 3057900 193490 3936800 3686100 5571700 3109700 3097100 3049600 2497400 2840100 2 2 1 2 2 2 2 2 2 2 2 1329600 2221200 0 2202900 1276300 1251900 916410 1598300 1570300 1536700 1879300 1238000 2072600 100730 2234400 1214200 1341800 968610 1605700 1579900 1503400 1803300 1 1 0 1 1 1 1 1 1 1 1 507360000 112470000 394890000 3567 1605 3334 20324;20325;20326 24405;24406;24407 24405 3 DYHFKVDNDENEHQLSLR Unmodified 2258.0352 0.035222893 524 P06748;P06748-3;P06748-2 NPM1 Nucleophosmin yes no 0 0 0 1 By MS/MS By MS/MS 4.07 1.65 4 4 4 19 6 5 1 2 16 29 37.137 37.17 3;4;5 3.1316E-90 9486 20211116_3434_TMUAki_TMT10x_P_F6 322.09 305.07 267140000 425220000 2460200 552090000 468590000 414570000 271410000 261150000 327430000 275500000 324560000 248730000 397250000 25400000 552200000 444380000 427370000 287340000 273690000 330550000 268480000 313180000 89 89 44 89 89 89 89 89 89 89 89 151300000 234310000 965270 308770000 363820000 334280000 182370000 133750000 177640000 146260000 164590000 140870000 218920000 14756000 310120000 344230000 334460000 194330000 146480000 180460000 142330000 159170000 28 28 13 28 28 28 28 28 28 28 28 115830000 190910000 1494900 243320000 104780000 80293000 89038000 127400000 149790000 129240000 159980000 107860000 178340000 10644000 242090000 100150000 92911000 93019000 127210000 150090000 126150000 154010000 61 61 31 61 61 61 61 61 61 61 61 104520000000 65286000000 39231000000 3568 524 3335 20327;20328;20329;20330;20331;20332;20333;20334;20335;20336;20337;20338;20339;20340;20341;20342;20343;20344;20345;20346;20347;20348;20349;20350;20351;20352;20353;20354;20355;20356;20357;20358;20359;20360;20361;20362;20363;20364;20365;20366;20367;20368;20369;20370;20371 24408;24409;24410;24411;24412;24413;24414;24415;24416;24417;24418;24419;24420;24421;24422;24423;24424;24425;24426;24427;24428;24429;24430;24431;24432;24433;24434;24435;24436;24437;24438;24439;24440;24441;24442;24443;24444;24445;24446;24447;24448;24449;24450;24451;24452;24453;24454;24455;24456;24457;24458;24459;24460;24461;24462;24463;24464;24465;24466;24467;24468;24469;24470;24471;24472;24473;24474;24475;24476;24477;24478;24479;24480;24481;24482;24483;24484;24485;24486;24487;24488;24489;24490;24491;24492;24493;24494;24495;24496;24497 24430 90 DYIAYAHSTIMPR Oxidation (M) 1552.7344 0.73441319 911 P33991 MCM4 DNA replication licensing factor MCM4 yes yes 0 0 1 0 By MS/MS 7.5 0.5 1 1 2 43.632 43.891 3 0.018333 13376 20211116_3446_TMUAki_TMT10x_S_F7 50.088 37.922 1511800 2629100 6749.7 2942300 1354500 1272500 1274400 1874400 2154000 1676900 2060600 1407600 2454400 129420 2954600 1297200 1412800 1324100 1869500 2149500 1645900 1990600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1511800 2629100 6749.7 2942300 1354500 1272500 1274400 1874400 2154000 1676900 2060600 1407600 2454400 129420 2954600 1297200 1412800 1324100 1869500 2149500 1645900 1990600 2 2 2 2 2 2 2 2 2 2 2 115480000 0 115480000 3569 911 3336 20372;20373 24498;24499 24499 1120 2 DYIPVDQEELR Unmodified 1375.662 0.66195975 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS 2 0 1 1 51.601 51.433 2 0.0017463 14888 20211116_3440_TMUAki_TMT10x_S_F2 81.525 65.863 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3570 1695 3337 20374 24500 24500 1 DYIPVDQEELRDYVK Unmodified 1880.9156 0.91560825 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 1 By MS/MS By MS/MS 3.6 1.02 1 1 2 1 3 2 63.216 63.024 3 1.0292E-23 19709 20211116_3431_TMUAki_TMT10x_P_F4 182.57 165.9 21131000 35630000 155530 36785000 26840000 32472000 25082000 24521000 24550000 25883000 27771000 19676000 33251000 1958800 37381000 25699000 33168000 25517000 25373000 25113000 25223000 26690000 5 5 4 5 5 5 5 5 5 5 5 10692000 17183000 29778 17653000 14222000 21714000 14715000 11608000 12172000 12283000 12973000 9955600 16035000 945640 18037000 13650000 21643000 14821000 12333000 12523000 11969000 12490000 2 2 1 2 2 2 2 2 2 2 2 10439000 18447000 125760 19132000 12617000 10758000 10367000 12912000 12377000 13600000 14797000 9720700 17215000 1013200 19344000 12049000 11525000 10696000 13040000 12590000 13254000 14200000 3 3 3 3 3 3 3 3 3 3 3 2730400000 1349200000 1381100000 3571 1695 3338 20375;20376;20377;20378;20379 24501;24502;24503;24504;24505;24506 24502 6 DYIVVGSDSGR Unmodified 1166.5568 0.5567664 1798 Q15393;Q15393-2 SF3B3 Splicing factor 3B subunit 3 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 40.531 40.586 2 5.4124E-14 13563 20211116_3441_TMUAki_TMT10x_S_F3 148.73 117.2 445670 692920 0 863340 1192000 877970 516330 376260 419960 413980 585730 414880 647200 36546 868930 1125200 882240 556080 409010 437340 402760 559900 1 1 0 1 1 1 1 1 1 1 1 445670 692920 0 863340 1192000 877970 516330 376260 419960 413980 585730 414880 647200 36546 868930 1125200 882240 556080 409010 437340 402760 559900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 83768000 83768000 0 3572 1798 3339 20380;20381 24507;24508 24508 2 DYKVDQEIINIMQDR Unmodified 1878.9146 0.9145624 456 O96000;O96000-2 NDUFB10 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 yes no 0 0 0 1 By MS/MS 3 0 1 1 72.447 72.076 3 0.019104 26120 20211116_3441_TMUAki_TMT10x_S_F3 50.938 36.243 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3573 456 3340 20382 24509 24509 1 DYLDFLDDEEDQGIYQSK Unmodified 2191.9433 0.94333915 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 78.991 78.969 3 5.3184E-12 25879 20211116_3428_TMUAki_TMT10x_P_F1 124.29 113.02 13620000 22541000 183810 22617000 13390000 16063000 16697000 9966300 10212000 11699000 16394000 12682000 21033000 1210000 22970000 12928000 16631000 16562000 10493000 10892000 11355000 15624000 3 3 2 3 3 3 3 3 3 3 3 3378700 5625800 0 5095500 2952700 5641900 4163100 2446600 2757700 3071900 3992500 3145200 5247500 186870 5243800 2855900 5642000 4116100 2667500 2910800 2974400 3813200 1 1 0 1 1 1 1 1 1 1 1 10241000 16915000 183810 17522000 10438000 10421000 12533000 7519700 7454100 8627400 12402000 9537100 15786000 1023100 17726000 10072000 10989000 12446000 7825100 7981100 8380300 11810000 2 2 2 2 2 2 2 2 2 2 2 2005800000 989400000 1016400000 3574 799 3341 20383;20384 24510;24511;24512 24510 3 DYLHYIR Unmodified 978.49232 0.49231565 1348 P62280 RPS11 40S ribosomal protein S11 yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 41.793 41.888 3 0.0020411 10497 20211116_3445_TMUAki_TMT10x_S_F6 108.24 74.16 603210 1119100 6374 1308900 1803000 1489900 878430 1178600 1177400 900250 950300 561700 1044900 72506 1324600 1705900 1499700 948620 1205700 1176600 890700 923750 3 3 2 3 3 3 3 3 3 3 3 394190 748090 952.01 847050 1573600 1286200 691770 764430 746590 559460 574980 367030 698410 49839 863710 1486700 1271500 749500 797410 751040 554850 559980 2 2 1 2 2 2 2 2 2 2 2 209030 370970 5421.9 461880 229350 203740 186650 414210 430780 340790 375310 194660 346490 22667 460920 219170 228210 199120 408320 425590 335860 363770 1 1 1 1 1 1 1 1 1 1 1 308720000 241670000 67052000 3575 1348 3342 20385;20386;20387;20388 24513;24514;24515;24516 24516 4 DYLLCDYNR Unmodified 1230.5339 0.53392246 1063 P47756-2;P47756 CAPZB F-actin-capping protein subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 50.369 50.434 2 0.001819 16164 20211116_3430_TMUAki_TMT10x_P_F3 93.178 78.096 16053000 26708000 56880 32887000 25501000 27321000 17934000 23986000 25044000 19982000 25416000 14946000 24944000 1432400 33030000 24260000 28101000 18807000 24435000 25180000 19681000 24506000 3 3 1 3 3 3 3 3 3 3 3 7729500 12562000 56880 15396000 18968000 19961000 11138000 11510000 12043000 9935800 12222000 7196900 11732000 801790 15575000 17991000 19864000 11736000 12082000 12219000 9768700 11785000 2 2 1 2 2 2 2 2 2 2 2 8323300 14146000 0 17491000 6533100 7359700 6795600 12476000 13001000 10046000 13194000 7749500 13212000 630640 17456000 6268600 8237400 7071500 12354000 12962000 9911900 12722000 1 1 0 1 1 1 1 1 1 1 1 875220000 546780000 328440000 3576 1063 3343 20389;20390;20391 24517;24518;24519 24517 3 DYLLCDYNRDGDSYR Unmodified 1923.8057 0.80574023 1063 P47756-2;P47756 CAPZB F-actin-capping protein subunit beta yes no 0 0 0 1 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 47.951 47.831 3 6.078E-34 16210 20211116_3441_TMUAki_TMT10x_S_F3 233.14 209.72 10990000 19176000 57220 22648000 13704000 13845000 10060000 14229000 14096000 12851000 15212000 10233000 17906000 901930 22728000 13046000 14656000 10520000 14406000 14203000 12608000 14640000 6 6 3 6 6 6 6 6 6 6 6 3421700 5790100 45844 6579500 6080500 8175900 4778500 4324000 4293400 4109200 4746900 3185700 5405700 296390 6680300 5796000 8144100 4900100 4584300 4405100 4022100 4565100 2 2 1 2 2 2 2 2 2 2 2 7568400 13386000 11376 16068000 7623700 5669300 5281400 9905100 9802200 8741900 10465000 7046800 12500000 605530 16047000 7249600 6512100 5619500 9822200 9797800 8585700 10075000 4 4 2 4 4 4 4 4 4 4 4 2055500000 921930000 1133600000 3577 1063 3344 20392;20393;20394;20395 24520;24521;24522;24523;24524;24525 24522 6 DYNKYEEGINIHLAK Unmodified 1805.8948 0.89481323 1583 Q12996 CSTF3 Cleavage stimulation factor subunit 3 yes yes 0 0 0 1 By MS/MS By MS/MS 6.25 0.829 1 1 2 3 1 50.858 51.224 4 2.6169E-06 13918 20211116_3434_TMUAki_TMT10x_P_F6 102.29 84.377 10430000 17092000 47962 17516000 19834000 22673000 13665000 17712000 17550000 15464000 15432000 9710800 15950000 986980 17916000 18862000 22668000 14304000 18191000 17609000 15195000 14952000 4 4 2 4 4 4 4 4 4 4 4 7703200 12683000 47962 12835000 17089000 20127000 11150000 12940000 12876000 11381000 11065000 7172600 11835000 783740 13192000 16238000 19892000 11674000 13473000 12960000 11180000 10730000 3 3 2 3 3 3 3 3 3 3 3 2726300 4408700 0 4681300 2744300 2546500 2515000 4771600 4673600 4082800 4367500 2538300 4114800 203240 4724500 2624100 2775800 2629900 4718500 4649200 4015800 4222700 1 1 0 1 1 1 1 1 1 1 1 1923800000 1681100000 242670000 3578 1583 3345 20396;20397;20398;20399 24526;24527;24528;24529 24527 4 DYPFHEEF Unmodified 1082.4345 0.434526 680 P15121 AKR1B1 Aldose reductase yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 55.61 55.387 2 0.0026297 18234 20211116_3430_TMUAki_TMT10x_P_F3 107.22 101.63 40157000 63927000 75041 66376000 52248000 58204000 41476000 36485000 32415000 33394000 44573000 37387000 59660000 1973500 67419000 49805000 59311000 42354000 38099000 33804000 32742000 42622000 6 6 1 6 6 6 6 6 6 6 6 24055000 37271000 75041 39305000 36757000 46797000 28224000 20196000 18569000 19175000 25839000 22398000 34785000 1004500 40066000 35031000 46614000 28776000 21846000 19572000 18770000 24701000 3 3 1 3 3 3 3 3 3 3 3 16102000 26657000 0 27071000 15491000 11407000 13252000 16289000 13845000 14219000 18735000 14990000 24875000 969020 27353000 14774000 12697000 13578000 16253000 14233000 13972000 17921000 3 3 0 3 3 3 3 3 3 3 3 9196500000 5415300000 3781200000 3579 680 3346 20400;20401;20402;20403;20404;20405 24530;24531;24532;24533;24534;24535 24532 6 DYPVVSIEDPFDQDDWAAWSK Unmodified 2482.0965 0.096485745 568 P09104;P09104-2 ENO2 Gamma-enolase yes no 0 0 0 0 By MS/MS 2 0 2 2 80.917 80.902 3 2.6451E-17 26827 20211116_3440_TMUAki_TMT10x_S_F2 135.38 126.56 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3580 568 3347 20406;20407 24536;24537 24536 2 DYPVVSIEDPFDQDDWGAWQK Unmodified 2509.1074 0.10738478 520 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 0 By MS/MS By MS/MS 2.79 1.45 9 6 8 6 4 1 16 18 80.59 80.572 2;3;4 2.1272E-82 26645 20211116_3440_TMUAki_TMT10x_S_F2 278.27 256.72 284020000 437790000 1762800 478920000 347200000 241980000 443660000 61353000 48494000 90390000 273440000 264430000 408660000 21677000 482130000 335170000 257070000 432750000 72365000 74609000 87083000 256810000 42 42 24 42 42 42 42 42 42 42 42 153010000 226370000 1287700 253110000 194670000 165760000 266220000 30024000 21623000 47656000 142140000 142460000 211330000 12084000 255020000 188400000 171200000 258720000 37905000 36978000 45817000 133380000 19 19 11 19 19 19 19 19 19 19 19 131010000 211420000 475110 225810000 152530000 76219000 177450000 31329000 26871000 42734000 131300000 121980000 197330000 9592800 227110000 146770000 85866000 174030000 34460000 37631000 41266000 123430000 23 23 13 23 23 23 23 23 23 23 23 65610000000 37893000000 27717000000 3581 520 3348 20408;20409;20410;20411;20412;20413;20414;20415;20416;20417;20418;20419;20420;20421;20422;20423;20424;20425;20426;20427;20428;20429;20430;20431;20432;20433;20434;20435;20436;20437;20438;20439;20440;20441 24538;24539;24540;24541;24542;24543;24544;24545;24546;24547;24548;24549;24550;24551;24552;24553;24554;24555;24556;24557;24558;24559;24560;24561;24562;24563;24564;24565;24566;24567;24568;24569;24570;24571;24572;24573;24574;24575;24576;24577;24578;24579;24580;24581;24582;24583;24584;24585;24586 24569 49 DYQDNKADVILK Unmodified 1420.7198 0.71980898 1064 P47813;O14602 EIF1AX;EIF1AY Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal yes no 0 0 0 1 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 48.325 48.493 3 2.9644E-06 14028 20211116_3433_TMUAki_TMT10x_P_F5 115.68 79.945 17332000 23042000 108720 30121000 36099000 27006000 20006000 19485000 22570000 19074000 23953000 16139000 21527000 1747600 30182000 34212000 27535000 21214000 20178000 22898000 18645000 23064000 4 4 2 4 4 4 4 4 4 4 4 9804800 13190000 59423 17459000 29513000 21526000 13590000 11882000 13974000 11062000 14189000 9129500 12324000 1119800 17571000 27900000 21462000 14630000 12543000 14207000 10838000 13681000 2 2 1 2 2 2 2 2 2 2 2 7527600 9851600 49295 12662000 6586300 5479800 6415700 7602800 8596100 8011500 9763900 7009100 9203100 627830 12611000 6312100 6073100 6584100 7635100 8691000 7807600 9382700 2 2 1 2 2 2 2 2 2 2 2 712430000 390540000 321890000 3582 1064 3349 20442;20443;20444;20445;20446 24587;24588;24589;24590;24591;24592 24589 6 DYSLLPLLAAAPQVGEK Unmodified 1783.972 0.97200092 970 P38432 COIL Coilin yes yes 0 0 0 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 2 2 79.695 79.699 3 5.6312E-11 25676 20211116_3447_TMUAki_TMT10x_S_F8 127.2 99.523 15759000 28094000 134870 20840000 26895000 25582000 21555000 26123000 22606000 20809000 22333000 14674000 26188000 1584100 21844000 25662000 25781000 22176000 26374000 22942000 20542000 21553000 3 3 2 3 3 3 3 3 3 3 3 3897000 6746200 0 5441100 3400900 8013900 4963800 5467100 4624700 4222100 5106700 3628500 6290100 312040 5681500 3299900 7948100 4942700 5649900 4736800 4174800 4911300 1 1 0 1 1 1 1 1 1 1 1 11862000 21348000 134870 15399000 23494000 17568000 16592000 20656000 17982000 16587000 17227000 11045000 19898000 1272000 16162000 22362000 17833000 17233000 20724000 18206000 16367000 16641000 2 2 2 2 2 2 2 2 2 2 2 3245500000 1469200000 1776300000 3583 970 3350 20447;20448;20449;20450 24593;24594;24595 24595 3 DYSVTANSK Unmodified 983.45599 0.45598972 531 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.764 1 1 4 3 3 34.34 34.313 2;3 1.3384E-10 7083 20211116_3444_TMUAki_TMT10x_S_F5 222.42 161.66 5836300 8649700 1890.5 8488400 6291800 6377800 5100600 3175600 3470800 3127800 5506600 5433600 8070500 408930 8639400 5997700 6555500 5185600 3388900 3674500 3056800 5249000 5 5 1 5 5 5 5 5 5 5 5 4457200 6591900 1890.5 6332700 4937800 5430800 3636200 2424800 2706100 2351100 4152800 4149500 6149900 299260 6465200 4696800 5520600 3727600 2614900 2845100 2299200 3961300 3 3 1 3 3 3 3 3 3 3 3 1379100 2057800 0 2155700 1354100 946990 1464500 750840 764670 776760 1353800 1284100 1920500 109670 2174200 1300800 1034900 1458000 774080 829440 757550 1287700 2 2 0 2 2 2 2 2 2 2 2 190320000 144030000 46288000 3584 531 3351 20451;20452;20453;20454;20455;20456 24596;24597;24598;24599;24600;24601 24600 6 DYTRPDLPSGDGQPALDPAIAAAFAK Unmodified 2656.3133 0.31329523 3152;3153 Q9UKA9;Q9UKA9-5;Q9UKA9-2;Q9UKA9-3;Q9UKA9-6;Q9UKA9-4 PTBP2 Polypyrimidine tract-binding protein 2 no no 0 0 0 1 By MS/MS 7 0 1 1 74.418 74.556 4 0.0039061 25991 20211116_3446_TMUAki_TMT10x_S_F7 53.998 42.698 4792400 8542200 334640 8504700 6220700 5484700 6461200 5134200 3781400 5149800 6985800 4464700 7970700 729210 8633700 5991000 5765900 6458300 5238200 4077900 5029000 6639800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4792400 8542200 334640 8504700 6220700 5484700 6461200 5134200 3781400 5149800 6985800 4464700 7970700 729210 8633700 5991000 5765900 6458300 5238200 4077900 5029000 6639800 1 1 1 1 1 1 1 1 1 1 1 862570000 0 862570000 3585 3152;3153 3352 20457 24602 24602 1 DYTYEELLNR Unmodified 1314.6092 0.6091959 738 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 57.419 57.288 2 1.2853E-40 18561 20211116_3429_TMUAki_TMT10x_P_F2 262.9 202.39 31568000 53487000 182940 53441000 37507000 54150000 35902000 42959000 46869000 45157000 45269000 29391000 49909000 2442800 54533000 35906000 54869000 36840000 44308000 47145000 44012000 43719000 8 8 2 8 8 8 8 8 8 8 8 15636000 26249000 40962 25969000 24171000 38572000 22113000 21530000 23093000 22220000 22097000 14558000 24492000 1301700 26701000 23117000 38134000 22568000 22771000 23415000 21673000 21347000 4 4 1 4 4 4 4 4 4 4 4 15933000 27238000 141970 27472000 13336000 15578000 13788000 21428000 23777000 22937000 23173000 14834000 25417000 1141200 27831000 12789000 16735000 14272000 21537000 23730000 22339000 22372000 4 4 1 4 4 4 4 4 4 4 4 3377800000 1788400000 1589400000 3586 738 3353 20458;20459;20460;20461;20462;20463;20464;20465 24603;24604;24605;24606;24607;24608;24609;24610;24611;24612 24604 10 DYVAQFEASALGK Unmodified 1397.6827 0.68269519 42 CON__P15497 yes yes 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 73.544 73.541 2;3 2.298E-24 23162 20211116_3444_TMUAki_TMT10x_S_F5 198.57 177.11 + 4627300 8070300 63967 6960500 6824400 13582000 6997800 8285500 9752000 9015300 7081300 4308900 7526300 474020 7278300 6551800 13309000 7174400 8713200 9705700 8774700 6913700 2 2 2 2 2 2 2 2 2 2 2 4627300 8070300 63967 6960500 6824400 13582000 6997800 8285500 9752000 9015300 7081300 4308900 7526300 474020 7278300 6551800 13309000 7174400 8713200 9705700 8774700 6913700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1757500000 1757500000 0 3587 42 3354 20466;20467;20468;20469;20470 24613;24614;24615;24616;24617 24616 5 DYVAVAR Unmodified 792.413 0.41300269 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS 3 0 1 1 33.434 33.195 2 0.0065286 10297 20211116_3441_TMUAki_TMT10x_S_F3 103.02 33.924 594650 920910 0 1021700 623370 558080 641400 586960 680690 578140 784470 553670 859680 47823 1028200 598050 597780 650880 595060 694440 565010 753530 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 594650 920910 0 1021700 623370 558080 641400 586960 680690 578140 784470 553670 859680 47823 1028200 598050 597780 650880 595060 694440 565010 753530 1 1 0 1 1 1 1 1 1 1 1 24819000 0 24819000 3588 1433 3355 20471 24618 24618 1 DYVCSQFPTPEAVLEGAR Unmodified 2037.9466 0.94659081 2047 Q7KZ85;Q7KZ85-3 SUPT6H Transcription elongation factor SPT6 yes no 0 0 0 0 By MS/MS 4 0 1 1 74.192 74.08 3 0.00021354 24747 20211116_3442_TMUAki_TMT10x_S_F4 65.808 46.516 1646600 2946800 85669 2999500 2432900 2044300 2049600 2157600 2007600 2089800 2515900 1533800 2749900 227370 3042000 2328300 2144100 2097800 2185900 2062300 2043800 2411200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1646600 2946800 85669 2999500 2432900 2044300 2049600 2157600 2007600 2089800 2515900 1533800 2749900 227370 3042000 2328300 2144100 2097800 2185900 2062300 2043800 2411200 1 1 1 1 1 1 1 1 1 1 1 207300000 0 207300000 3589 2047 3356 20472 24619 24619 1 DYVIEDDVNMAIR Oxidation (M) 1567.7188 0.7188227 1114 P49736 MCM2 DNA replication licensing factor MCM2 yes yes 0 0 1 0 By matching By MS/MS 1 0 3 1 2 59.108 58.909 2;3 0.0002195 19761 20211116_3439_TMUAki_TMT10x_S_F1 82.202 67.641 3478300 6259500 107900 5793700 3957000 4469400 3674500 5879900 5867400 5654800 5804200 3239400 5839100 395640 5923600 3793600 4666500 3809900 5900300 5870900 5532000 5601000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3478300 6259500 107900 5793700 3957000 4469400 3674500 5879900 5867400 5654800 5804200 3239400 5839100 395640 5923600 3793600 4666500 3809900 5900300 5870900 5532000 5601000 2 2 2 2 2 2 2 2 2 2 2 941970000 463560000 478420000 3590 1114 3357 20473;20474;20475 24620;24621 24621 1478 2 DYVIEDDVNMAIR Unmodified 1551.7239 0.72390808 1114 P49736 MCM2 DNA replication licensing factor MCM2 yes yes 0 0 0 0 By MS/MS 1 0 1 1 64.716 64.464 2 2.0061E-06 22037 20211116_3439_TMUAki_TMT10x_S_F1 117.98 90.861 3152200 5492500 0 5035800 3327700 2466300 3786800 1804800 1515800 2011700 3479800 2935000 5123400 261540 5131200 3202200 2656200 3746800 1874600 1711200 1956200 3296000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3152200 5492500 0 5035800 3327700 2466300 3786800 1804800 1515800 2011700 3479800 2935000 5123400 261540 5131200 3202200 2656200 3746800 1874600 1711200 1956200 3296000 1 1 0 1 1 1 1 1 1 1 1 367010000 0 367010000 3591 1114 3357 20476 24622 24622 1 DYYINIR Unmodified 955.47633 0.47633123 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 47.666 47.827 2 0.0030215 13506 20211116_3431_TMUAki_TMT10x_P_F4 120.52 100.52 11194000 17293000 32828 21661000 16842000 16590000 11597000 15029000 15420000 14414000 15718000 10423000 16153000 1007700 21714000 16017000 17179000 12156000 15341000 15530000 14103000 15153000 3 3 2 3 3 3 3 3 3 3 3 4803000 6924100 25807 9321800 11469000 11677000 5902800 6617500 6768600 6535700 6575200 4472300 6469900 515620 9375600 10859000 11637000 6305300 6981100 6841200 6386400 6348900 1 1 1 1 1 1 1 1 1 1 1 6390800 10369000 7020.5 12339000 5372800 4913500 5694700 8411400 8650900 7878500 9142600 5950300 9682800 492050 12338000 5158200 5542200 5851100 8359600 8688900 7716500 8804300 2 2 1 2 2 2 2 2 2 2 2 1010500000 492590000 517890000 3592 196 3358 20477;20478;20479 24623;24624;24625 24623 3 DYYINIRK Unmodified 1083.5713 0.57129425 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 0 1 By MS/MS 8 0 1 1 44.132 44.103 3 0.09006 11226 20211116_3447_TMUAki_TMT10x_S_F8 42.19 4.5097 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3593 196 3359 20480 24626 24626 1 EAAAAAAAAVAAAAAAAAAAEPYPVSGAK Unmodified 2453.2551 0.25505207 2001 Q6P6C2;Q6P6C2-1 ALKBH5 RNA demethylase ALKBH5 yes no 0 0 0 0 By MS/MS By MS/MS 5.83 2.73 2 1 3 3 3 80.815 80.814 3;4 3.1137E-25 28080 20211116_3429_TMUAki_TMT10x_P_F2 146.34 130.58 8338500 13988000 86827 13106000 10059000 11747000 10661000 7908100 7863900 8386400 10233000 7763400 13049000 638620 13412000 9655500 11965000 10696000 8248400 8206600 8170900 9797600 6 6 2 6 6 6 6 6 6 6 6 3457500 5400600 0 4956100 3206600 5949600 3738500 3389400 3054600 3311600 4260900 3218500 5037600 193770 5102300 3082200 5942300 3743100 3573000 3180300 3237500 4073000 2 2 0 2 2 2 2 2 2 2 2 4881100 8587600 86827 8149800 6852800 5797700 6922600 4518600 4809300 5074800 5971700 4544900 8011500 444850 8309900 6573300 6022600 6952800 4675400 5026300 4933400 5724700 4 4 2 4 4 4 4 4 4 4 4 3496400000 1959900000 1536500000 3594 2001 3360 20481;20482;20483;20484;20485;20486 24627;24628;24629;24630;24631;24632 24627 6 EAAAALVEEETRR Unmodified 1443.7318 0.73177065 368 O75934 BCAS2 Pre-mRNA-splicing factor SPF27 yes yes 0 0 0 1 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 3 4 41.181 41.071 3 2.1683E-25 10661 20211116_3440_TMUAki_TMT10x_S_F2 224.42 152.33 10950000 16738000 115730 19780000 18984000 18174000 12158000 16594000 17821000 13254000 16443000 10195000 15630000 1011100 19940000 18031000 18578000 12865000 16851000 17833000 13082000 15905000 11 11 6 11 11 11 11 11 11 11 11 6371500 9696500 106080 11483000 15145000 14847000 8372500 9453300 10101000 7786800 9385600 5933100 9054600 728470 11639000 14356000 14796000 8900200 9833800 10175000 7673700 9076100 7 7 5 7 7 7 7 7 7 7 7 4578500 7042000 9649.7 8296400 3839800 3326900 3785500 7140300 7720200 5466700 7057500 4262300 6575600 282590 8300800 3674700 3781400 3964400 7017200 7658300 5408000 6828700 4 4 1 4 4 4 4 4 4 4 4 1740900000 1036000000 704920000 3595 368 3361 20487;20488;20489;20490;20491;20492;20493 24633;24634;24635;24636;24637;24638;24639;24640;24641;24642;24643;24644 24642 12 EAAASGLPLMVIIHK Oxidation (M) 1564.8647 0.86469908 452 O95881 TXNDC12 Thioredoxin domain-containing protein 12 yes yes 0 0 1 0 By MS/MS By MS/MS 7 0 2 1 1 60.113 60.728 3 1.309E-06 19612 20211116_3435_TMUAki_TMT10x_P_F7 105.03 88.804 7289700 11932000 18451 11066000 9768800 13259000 8853400 12078000 10573000 10215000 10165000 6787500 11130000 654960 11383000 9344800 13346000 9081400 12284000 10666000 10053000 9818500 2 2 1 2 2 2 2 2 2 2 2 4215700 6544700 0 5966700 5584900 9698000 5327500 6553900 5548100 5460200 5391000 3925200 6104700 367360 6183700 5348500 9578900 5424200 6789500 5629000 5377800 5205400 1 1 0 1 1 1 1 1 1 1 1 3073900 5387000 18451 5099200 4183900 3560900 3525900 5523700 5024800 4754900 4774000 2862300 5025500 287590 5199300 3996300 3766600 3657300 5494100 5037300 4675500 4613100 1 1 1 1 1 1 1 1 1 1 1 1776800000 933480000 843300000 3596 452 3362 20494;20495 24645;24646 24645 332 2 EAAASGLPLMVIIHK Unmodified 1548.8698 0.86978446 452 O95881 TXNDC12 Thioredoxin domain-containing protein 12 yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 69.325 69.427 3 1.5084E-06 24071 20211116_3439_TMUAki_TMT10x_S_F1 94.09 68.873 4041100 6951000 160980 6606800 4691900 9082200 5885100 6011900 4864400 5984400 5586300 3763900 6484800 494180 6801400 4538600 9030600 5875500 6266600 5019000 5845800 5366500 1 1 1 1 1 1 1 1 1 1 1 4041100 6951000 160980 6606800 4691900 9082200 5885100 6011900 4864400 5984400 5586300 3763900 6484800 494180 6801400 4538600 9030600 5875500 6266600 5019000 5845800 5366500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 608860000 608860000 0 3597 452 3362 20496;20497;20498 24647;24648;24649 24648 3 EAAATEIRR Unmodified 1015.5411 0.54105675 1259 P56545;P56545-2;P56545-3 CTBP2 C-terminal-binding protein 2 yes no 0 0 0 1 By MS/MS 3 0 1 1 26.536 26.243 3 0.012196 7620 20211116_3441_TMUAki_TMT10x_S_F3 61.691 28.849 100530 184170 1964.3 162400 129490 118670 133390 122590 105230 146250 149700 93615 171770 10571 166560 124380 123680 134230 125160 109860 141860 143030 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100530 184170 1964.3 162400 129490 118670 133390 122590 105230 146250 149700 93615 171770 10571 166560 124380 123680 134230 125160 109860 141860 143030 1 1 1 1 1 1 1 1 1 1 1 1392600 0 1392600 3598 1259 3363 20499 24650 24650 1 EAAEAIEAEGATAPLTELLHSR Unmodified 2278.1441 0.14410464 923 P35222 CTNNB1 Catenin beta-1 yes yes 0 0 0 0 By MS/MS 3 1 1 1 2 72.793 72.669 3 8.8855E-11 23513 20211116_3440_TMUAki_TMT10x_S_F2 114.39 97.309 2689300 4876800 0 4340700 3722500 2971700 3353900 2713600 2680100 2934400 3495800 2503800 4548600 214150 4445600 3558600 3106000 3400400 2778600 2785000 2856800 3347000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2689300 4876800 0 4340700 3722500 2971700 3353900 2713600 2680100 2934400 3495800 2503800 4548600 214150 4445600 3558600 3106000 3400400 2778600 2785000 2856800 3347000 2 2 0 2 2 2 2 2 2 2 2 765120000 0 765120000 3599 923 3364 20500;20501 24651;24652 24651 2 EAAEMGK Unmodified 734.32689 0.3268898 1416;1520 P68104;Q5VTE0;Q05639 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2 no no 0 0 0 0 By MS/MS 3 0 1 1 31.947 31.702 2 0.018923 9717 20211116_3441_TMUAki_TMT10x_S_F3 89.142 58.795 1833800 3231600 0 2854800 1748200 1491700 1903200 739220 665960 789680 1970000 1707300 3014000 132440 2918600 1678900 1586800 1884100 791070 777910 769160 1860000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1833800 3231600 0 2854800 1748200 1491700 1903200 739220 665960 789680 1970000 1707300 3014000 132440 2918600 1678900 1586800 1884100 791070 777910 769160 1860000 1 1 0 1 1 1 1 1 1 1 1 37608000 0 37608000 3600 1416;1520 3365 20502 24653 24653 1 EAAENSLVAYK Unmodified 1193.5928 0.59281755 1342 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 4 4 4 7 5 46.61 46.547 2;3 2.3195E-14 12998 20211116_3431_TMUAki_TMT10x_P_F4 187.16 155.78 33871000 58635000 757820 67697000 108100000 73302000 48679000 54064000 65337000 47271000 61766000 31539000 54747000 4164100 68506000 102180000 73897000 53000000 55736000 65614000 46447000 59694000 14 14 7 14 14 14 14 14 14 14 14 21360000 37622000 676050 41230000 93889000 62043000 34906000 34051000 40124000 29644000 37479000 19890000 35119000 3065800 42118000 88560000 61292000 38652000 35902000 40497000 29133000 36236000 9 9 4 9 9 9 9 9 9 9 9 12511000 21013000 81773 26468000 14215000 11259000 13774000 20013000 25213000 17627000 24287000 11649000 19628000 1098300 26389000 13621000 12605000 14348000 19835000 25117000 17313000 23457000 5 5 3 5 5 5 5 5 5 5 5 3681700000 2139700000 1541900000 3601 1342 3366 20503;20504;20505;20506;20507;20508;20509;20510;20511;20512;20513;20514 24654;24655;24656;24657;24658;24659;24660;24661;24662;24663;24664;24665;24666;24667;24668 24660 15 EAAEVLQNNRR Unmodified 1298.6691 0.66911081 1292 P61081 UBE2M NEDD8-conjugating enzyme Ubc12 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 29.769 29.617 3 1.5015E-06 6208 20211116_3431_TMUAki_TMT10x_P_F4 126.19 104.15 522070 875820 2299.1 881150 709010 759400 616850 415070 465750 446470 643260 486100 817260 46161 896720 677530 773400 625840 440330 486730 434750 615040 2 2 1 2 2 2 2 2 2 2 2 317750 507180 2299.1 526670 511070 592730 371080 276390 314090 310380 401380 295870 473330 31194 536900 486650 592650 381960 298000 325130 301730 384490 1 1 1 1 1 1 1 1 1 1 1 204320 368640 0 354480 197950 166680 245770 138680 151660 136090 241890 190230 343930 14968 359820 190880 180750 243880 142330 161610 133020 230540 1 1 0 1 1 1 1 1 1 1 1 40339000 27510000 12829000 3602 1292 3367 20515;20516;20517 24669;24670 24669 2 EAAFDDAVEER Unmodified 1250.5415 0.54151026 1553 Q09028;Q09028-3 RBBP4 Histone-binding protein RBBP4 yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 41.526 41.429 2 1.4593E-47 12551 20211116_3439_TMUAki_TMT10x_S_F1 301.76 246.39 7192800 9023100 13188 17634000 17498000 8000600 6089900 4582600 8061900 4269600 9586900 6696700 8451700 675680 17237000 16487000 8667800 6834800 4822400 8169400 4182800 9200900 5 5 2 5 5 5 5 5 5 5 5 3642200 4503800 13188 8833000 15463000 6720700 3768200 2306000 4230800 2219100 4938300 3391300 4218800 479800 8673800 14533000 6877700 4448000 2564800 4309000 2170900 4741900 2 2 2 2 2 2 2 2 2 2 2 3550700 4519300 0 8800700 2035000 1279900 2321800 2276600 3831100 2050500 4648600 3305400 4233000 195870 8563300 1953500 1790100 2386800 2257600 3860400 2011900 4459000 3 3 0 3 3 3 3 3 3 3 3 1693200000 1280700000 412540000 3603 1553 3368 20518;20519;20520;20521 24671;24672;24673;24674;24675 24673 5 EAAGEGPALYEDPPDQK Unmodified 1785.8057 0.80572345 829 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 46.799 46.645 3 1.5834E-21 14208 20211116_3429_TMUAki_TMT10x_P_F2 162.46 142.62 9554500 13998000 203290 24372000 34956000 24533000 16296000 13988000 21337000 11315000 18131000 8897700 13100000 1333200 24133000 33060000 24745000 17662000 14674000 21372000 11161000 17590000 8 8 6 8 8 8 8 8 8 8 8 6603800 9668500 156680 16201000 32942000 22829000 14530000 9345100 14149000 7600300 12114000 6150000 9046200 1060800 16165000 31132000 22545000 15689000 10130000 14339000 7494800 11749000 5 5 4 5 5 5 5 5 5 5 5 2950700 4329000 46617 8171600 2014000 1703400 1766100 4642900 7187200 3714800 6017500 2747800 4053800 272420 7968300 1927600 2200300 1972200 4544500 7033000 3666300 5841100 3 3 2 3 3 3 3 3 3 3 3 2272300000 1613200000 659080000 3604 829 3369 20522;20523;20524;20525;20526;20527 24676;24677;24678;24679;24680;24681;24682;24683 24678 8 EAAGTTAAAGTGGATEQPPR Unmodified 1812.8602 0.86021864 207 O43290 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 30.362 30.115 3 1.6392E-41 9119 20211116_3441_TMUAki_TMT10x_S_F3 202.81 177.49 273260 459370 3605.5 488370 338440 399940 330860 280550 309950 280320 400180 254450 428750 26576 494840 324520 410200 335360 291260 319440 273790 383250 4 4 2 4 4 4 4 4 4 4 4 141290 215520 1305 219980 189480 267020 168310 120550 125500 126980 169910 131560 201120 13605 224810 181230 265830 170500 130160 131120 123750 162530 1 1 1 1 1 1 1 1 1 1 1 131970 243850 2300.5 268380 148970 132920 162550 159990 184450 153340 230270 122890 227630 12971 270040 143290 144380 164850 161100 188320 150040 220710 3 3 1 3 3 3 3 3 3 3 3 74579000 14656000 59923000 3605 207 3370 20528;20529 24684;24685;24686;24687 24685 4 EAALILGVSPTANK Unmodified 1382.7769 0.77692993 2434 Q96DA6;Q96DA6-2 DNAJC19 Mitochondrial import inner membrane translocase subunit TIM14 yes no 0 0 0 0 By MS/MS 7 0 1 1 61.499 61.992 3 1.0374E-06 20706 20211116_3446_TMUAki_TMT10x_S_F7 95.981 71.046 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3606 2434 3371 20530 24688 24688 1 EAALPPVSPLK Unmodified 1120.6492 0.64921022 1511 Q04637;Q04637-3;Q04637-8;Q04637-5;Q04637-4;Q04637-9;Q04637-6;Q04637-7 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 0 By MS/MS 6 0 1 1 54.898 54.987 2 0.041247 15861 20211116_3445_TMUAki_TMT10x_S_F6 62.303 34.134 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3607 1511 3372 20531 24689 24689 1 EAALTSEEVGADLEQVEVLQK Unmodified 2257.1325 0.1325369 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS 1.5 0.5 1 1 2 77.377 77.377 3 4.2705E-14 25215 20211116_3428_TMUAki_TMT10x_P_F1 131.25 119.1 3535500 5773800 149090 5604000 3423900 6870800 3949600 3469000 3700500 3679200 4673600 3293000 5386900 430490 5748000 3305200 6845000 3971000 3705100 3810000 3584700 4478300 1 1 1 1 1 1 1 1 1 1 1 3535500 5773800 149090 5604000 3423900 6870800 3949600 3469000 3700500 3679200 4673600 3293000 5386900 430490 5748000 3305200 6845000 3971000 3705100 3810000 3584700 4478300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1484400000 1484400000 0 3608 1663 3373 20532;20533 24690;24691 24690 2 EAALVQQEEEKAEQR Unmodified 1756.8592 0.85915601 1753 Q15020;Q15020-4 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 0 0 0 1 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 43.415 43.288 3 1.8051E-30 13362 20211116_3439_TMUAki_TMT10x_S_F1 215.15 201.72 1936800 3427700 53513 3951400 4761300 4757100 2373300 7108700 7425500 4576800 4976700 1803800 3200400 250010 4006100 4508600 4849400 2688600 7033200 7246200 4574300 4876600 4 4 4 4 4 4 4 4 4 4 4 605330 983840 22725 1210300 3421300 3427900 1374300 2381400 2567600 1456400 1580100 563790 918880 110800 1251900 3230400 3331800 1537900 2446300 2524800 1460500 1554800 1 1 1 1 1 1 1 1 1 1 1 1331500 2443900 30787 2741100 1340000 1329300 999070 4727400 4857900 3120400 3396600 1240000 2281500 139200 2754300 1278100 1517600 1150700 4586900 4721400 3113800 3321800 3 3 3 3 3 3 3 3 3 3 3 383880000 227380000 156510000 3609 1753 3374 20534;20535;20536;20537;20538 24692;24693;24694;24695;24696 24694 5 EAANLLEGHAR Unmodified 1179.5996 0.59963426 92 O00461 GOLIM4 Golgi integral membrane protein 4 yes yes 0 0 0 0 By MS/MS 3 0 1 1 33.827 33.588 3 0.053822 10486 20211116_3441_TMUAki_TMT10x_S_F3 39.878 19.888 276900 466110 9641.3 506160 266150 224970 304190 273940 323690 274160 382810 257890 435080 31792 509330 256740 247630 307170 276060 330550 267750 367460 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 276900 466110 9641.3 506160 266150 224970 304190 273940 323690 274160 382810 257890 435080 31792 509330 256740 247630 307170 276060 330550 267750 367460 1 1 1 1 1 1 1 1 1 1 1 17472000 0 17472000 3610 92 3375 20539 24697 24697 1 EAAPDAGAEPITADSDPAYSSK Unmodified 2161.9651 0.96513722 2181 Q8N163;Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 0 By MS/MS By matching 2.5 0.5 1 1 1 1 48.005 47.691 3 1.5584E-10 14663 20211116_3429_TMUAki_TMT10x_P_F2 108.96 98.014 603390 892130 4593.7 1540300 3423100 1876500 961380 918770 1285800 708700 1176600 561850 834870 93798 1530700 3220600 1869400 1113900 976180 1290100 700810 1138400 1 1 1 1 1 1 1 1 1 1 1 603390 892130 4593.7 1540300 3423100 1876500 961380 918770 1285800 708700 1176600 561850 834870 93798 1530700 3220600 1869400 1113900 976180 1290100 700810 1138400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 273680000 214970000 58704000 3611 2181 3376 20540;20541 24698 24698 1 EAAQEAVK Unmodified 844.42905 0.42904669 271;272;211 O60506;O60506-2;O60506-3;O60506-4;O60506-5;O43390;O43390-2;O43390-3;O43390-4 SYNCRIP;HNRNPR Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R no no 0 0 0 0 By matching By MS/MS 2.5 0.5 1 1 1 1 30.838 30.598 2 0.002486 9312 20211116_3441_TMUAki_TMT10x_S_F3 108.98 42.356 196640 348000 0 278060 180490 209640 203710 157430 188960 164700 228340 183060 324460 11278 287580 173340 216610 204960 162910 194280 160550 219050 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 196640 348000 0 278060 180490 209640 203710 157430 188960 164700 228340 183060 324460 11278 287580 173340 216610 204960 162910 194280 160550 219050 1 1 0 1 1 1 1 1 1 1 1 16584000 7172800 9410800 3612 271;272;211 3377 20542;20543 24699 24699 1 EAASILQELQVETYGSMEKK Oxidation (M) 2269.1148 0.11477835 74 O00232;O00232-2 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes no 0 0 1 1 By MS/MS By MS/MS 4 0 2 1 1 72.261 72.212 4 0.0022574 23502 20211116_3431_TMUAki_TMT10x_P_F4 59.339 44.725 7982500 12918000 26668 12616000 9120100 12923000 9372700 9817100 8540200 9250800 10302000 7432200 12053000 631500 12896000 8748200 13077000 9468100 10121000 8787100 9058100 9883200 3 3 1 3 3 3 3 3 3 3 3 4468800 7225100 26668 7151200 4946800 8868000 5426000 5445200 4819300 5072500 5831500 4160500 6741500 331500 7326300 4752300 8851300 5460000 5697800 4965300 4969400 5594100 2 2 1 2 2 2 2 2 2 2 2 3513700 5693200 0 5464600 4173300 4055300 3946700 4371900 3720900 4178300 4470300 3271600 5311500 300000 5569900 3995800 4225300 4008100 4423300 3821800 4088700 4289100 1 1 0 1 1 1 1 1 1 1 1 1075800000 659410000 416350000 3613 74 3378 20544;20545 24700;24701;24702 24700 40 3 EAATLEVERPLPMEVEK Unmodified 1939.9925 0.99247837 1165 P51858;P51858-3;P51858-2 HDGF Hepatoma-derived growth factor yes no 0 0 0 1 By MS/MS By MS/MS 2.85 1.17 2 3 4 3 1 6 7 55.848 55.698 3;4 4.1577E-36 19441 20211116_3441_TMUAki_TMT10x_S_F3 211.89 186.17 142530000 212210000 1545300 275710000 145480000 111350000 128750000 45756000 43403000 61452000 132120000 132720000 198250000 12701000 274320000 139130000 122100000 128830000 50301000 51038000 59371000 124710000 18 18 13 18 18 18 18 18 18 18 18 66229000 94038000 294060 122360000 89885000 73421000 69592000 19833000 19539000 27394000 57125000 61666000 87854000 5852100 122090000 85678000 76611000 70102000 23095000 23401000 26443000 53942000 8 8 4 8 8 8 8 8 8 8 8 76305000 118170000 1251200 153350000 55599000 37924000 59155000 25923000 23865000 34058000 75000000 71054000 110400000 6849300 152230000 53453000 45485000 58725000 27206000 27637000 32928000 70767000 10 10 9 10 10 10 10 10 10 10 10 11200000000 5712300000 5487300000 3614 1165 3379 20546;20547;20548;20549;20550;20551;20552;20553;20554;20555;20556;20557;20558 24703;24704;24705;24706;24707;24708;24709;24710;24711;24712;24713;24714;24715;24716;24717;24718;24719;24720 24715 18 EAATLEVERPLPMEVEK Oxidation (M) 1955.9874 0.98739299 1165 P51858;P51858-3;P51858-2 HDGF Hepatoma-derived growth factor yes no 0 0 1 1 By MS/MS By MS/MS 3.31 1.07 4 3 4 2 6 7 48.824 48.741 3;4 1.1206E-15 16559 20211116_3441_TMUAki_TMT10x_S_F3 154.52 119.48 62215000 98461000 712320 109970000 76963000 83969000 60157000 63718000 89858000 74692000 79851000 57933000 91918000 5893500 110990000 73408000 86691000 62818000 66134000 89760000 72496000 77339000 15 15 10 15 15 15 15 15 15 15 15 25666000 39251000 415220 45108000 46085000 54052000 28864000 25834000 36242000 29845000 32294000 23900000 36647000 2765900 45738000 43778000 53879000 30407000 27810000 36407000 28983000 31275000 6 6 5 6 6 6 6 6 6 6 6 36549000 59211000 297100 64861000 30878000 29917000 31293000 37884000 53616000 44846000 47556000 34032000 55271000 3127700 65247000 29629000 32812000 32412000 38324000 53353000 43512000 46063000 9 9 5 9 9 9 9 9 9 9 9 15370000000 7591200000 7778500000 3615 1165 3379 20559;20560;20561;20562;20563;20564;20565;20566;20567;20568;20569;20570;20571 24721;24722;24723;24724;24725;24726;24727;24728;24729;24730;24731;24732;24733;24734;24735;24736;24737 24731 1551 17 EAAWAISNLTISGR Unmodified 1487.7732 0.77324153 106;98 O00629;O00505 KPNA4;KPNA3 Importin subunit alpha-3;Importin subunit alpha-4 no no 0 0 0 0 By MS/MS 8 0 1 1 67.314 67.435 2 1.4278E-06 21221 20211116_3436_TMUAki_TMT10x_P_F8 101.53 68.27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3616 106;98 3380 20572 24738 24738 1 EAAYHPEVAPDVR Unmodified 1452.6997 0.69974224 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 33.388 33.234 3 6.2466E-10 10293 20211116_3441_TMUAki_TMT10x_S_F3 138.02 110.54 1097500 1695600 13082 2049400 2280200 2015300 1248300 1241500 1574100 1043700 1799100 1021900 1583500 102830 2065200 2160100 2037800 1330200 1295400 1595100 1027500 1728600 3 3 2 3 3 3 3 3 3 3 3 789510 1258600 6057.6 1484700 2009700 1774800 954200 868050 1096700 730660 1317600 735020 1175200 71276 1503000 1899800 1769800 1027500 924230 1117300 719260 1264200 2 2 1 2 2 2 2 2 2 2 2 308020 437050 7024.8 564690 270420 240490 294060 373440 477380 313020 481510 286850 408290 31557 562210 260310 267980 302720 371170 477780 308200 464370 1 1 1 1 1 1 1 1 1 1 1 209490000 133130000 76360000 3617 3293 3381 20573;20574;20575 24739;24740;24741 24741 3 EACASFLAR Unmodified 1023.4808 0.48076468 2114 Q8WVZ9;Q86V97 KBTBD7;KBTBD6 Kelch repeat and BTB domain-containing protein 7;Kelch repeat and BTB domain-containing protein 6 yes no 0 0 0 0 By MS/MS 4 0 1 1 39.447 39.628 2 0.021597 10607 20211116_3442_TMUAki_TMT10x_S_F4 61.679 34.05 579440 922230 14137 1160000 587980 465140 517290 619540 740260 554720 776620 539620 861430 61335 1156200 562860 520180 535310 620170 744620 544440 748050 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 579440 922230 14137 1160000 587980 465140 517290 619540 740260 554720 776620 539620 861430 61335 1156200 562860 520180 535310 620170 744620 544440 748050 1 1 1 1 1 1 1 1 1 1 1 20261000 0 20261000 3618 2114 3382 20576 24742 24742 1 EACFAVEGPK Unmodified 1106.5066 0.50664508 38 CON__P02769 yes yes 0 0 0 0 By MS/MS By matching 3 0 2 1 1 45.346 45.184 2 5.307E-05 14012 20211116_3430_TMUAki_TMT10x_P_F3 132.01 102.66 + 1131100 1335300 0 1714200 2339800 1701900 1328700 1150400 1356200 1268200 1329400 1053200 1247400 110360 1721800 2218000 1722100 1401400 1201000 1377600 1233700 1283200 1 1 0 1 1 1 1 1 1 1 1 1131100 1335300 0 1714200 2339800 1701900 1328700 1150400 1356200 1268200 1329400 1053200 1247400 110360 1721800 2218000 1722100 1401400 1201000 1377600 1233700 1283200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 136390000 97960000 38428000 3619 38 3383 20577;20578 24743 24743 1 EACGVIVELIK Unmodified 1229.669 0.66895938 3225 Q9Y265;Q9Y265-2 RUVBL1 RuvB-like 1 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.756 2 3 2 4 3 71.138 71.16 2;3 1.7438E-07 22191 20211116_3444_TMUAki_TMT10x_S_F5 120.06 65.645 24260000 37788000 318660 37780000 28597000 45319000 30902000 25703000 23769000 26902000 30965000 22590000 35260000 2319200 38655000 27495000 45263000 31004000 27159000 24748000 26225000 29648000 5 5 4 5 5 5 5 5 5 5 5 21385000 33205000 277070 33449000 25121000 41982000 27850000 22650000 20996000 23430000 27049000 19913000 30984000 2033700 34234000 24170000 41808000 27895000 24028000 21874000 22851000 25906000 4 4 3 4 4 4 4 4 4 4 4 2875000 4582900 41592 4330600 3476000 3337300 3052000 3052100 2773300 3471900 3915900 2677200 4275400 285540 4420900 3324800 3454700 3109300 3130200 2874000 3373600 3742200 1 1 1 1 1 1 1 1 1 1 1 1692500000 1364900000 327630000 3620 3225 3384 20579;20580;20581;20582;20583;20584;20585 24744;24745;24746;24747;24748;24749;24750;24751 24750 8 EACWTISNITAGNR Unmodified 1591.7413 0.74128948 282;1173 O60684;P52294 KPNA6;KPNA1 Importin subunit alpha-7;Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed no no 0 0 0 0 By MS/MS 6 0 1 1 56.004 56.083 3 0.010095 15937 20211116_3434_TMUAki_TMT10x_P_F6 58.794 44.83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3621 282;1173 3385 20586 24752 24752 1 EADDIVNWLK Unmodified 1201.5979 0.59790293 533 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 By MS/MS By MS/MS 4.12 1.17 1 1 3 2 1 4 4 76.159 76.113 2 1.0341E-08 25505 20211116_3442_TMUAki_TMT10x_S_F4 136.63 84.054 34511000 56456000 380570 60321000 43654000 44899000 44983000 22531000 20623000 25105000 39641000 32136000 52694000 3343900 61034000 41914000 46189000 44804000 24114000 22721000 24413000 37651000 4 4 4 4 4 4 4 4 4 4 4 20403000 32861000 189860 36140000 26082000 31028000 29178000 10705000 9641000 12333000 22046000 18999000 30675000 1948000 36561000 25098000 31468000 28830000 11959000 11103000 11978000 20883000 2 2 2 2 2 2 2 2 2 2 2 14108000 23594000 190700 24181000 17573000 13871000 15805000 11826000 10982000 12772000 17595000 13137000 22018000 1395900 24473000 16817000 14721000 15975000 12155000 11618000 12435000 16768000 2 2 2 2 2 2 2 2 2 2 2 1706500000 1389200000 317280000 3622 533 3386 20587;20588;20589;20590;20591;20592;20593;20594 24753;24754;24755;24756;24757;24758;24759;24760 24756 8 EADESLNFEEQILEAAK Unmodified 1934.9109 0.91091681 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 1.6 0.8 3 1 1 4 1 56.56 56.512 2;3 5.3604E-44 27594 20211116_3439_TMUAki_TMT10x_S_F1 237.41 223.98 14498000 23565000 5586.6 20227000 15158000 24382000 18081000 16177000 16984000 17041000 17951000 13498000 21976000 1047700 20933000 14597000 24398000 18153000 16888000 17361000 16608000 17286000 5 5 2 5 5 5 5 5 5 5 5 11221000 17944000 5586.6 15903000 10535000 20334000 13348000 12284000 12809000 12789000 13556000 10447000 16736000 819120 16434000 10166000 20261000 13375000 12911000 13081000 12469000 13054000 4 4 2 4 4 4 4 4 4 4 4 3276800 5621000 0 4324200 4622600 4048000 4733200 3892900 4174900 4252700 4395100 3050600 5240200 228540 4498900 4431100 4137300 4778000 3976600 4279500 4138600 4232900 1 1 0 1 1 1 1 1 1 1 1 2126900000 1688100000 438800000 3623 3293 3387 20595;20596;20597;20598;20599 24761;24762;24763;24764;24765 24765 5 EADGILKPLPK Unmodified 1179.6863 0.68632401 1104 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 49.303 49.484 3 7.6839E-05 14411 20211116_3433_TMUAki_TMT10x_P_F5 89.805 54.917 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3624 1104 3388 20600;20601 24766;24767 24766 2 EADGSETPEPFAAEAK Unmodified 1647.7264 0.7264105 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 By MS/MS 1 0 1 1 47.927 47.685 3 0.0096262 15114 20211116_3439_TMUAki_TMT10x_S_F1 51.235 38.609 1390300 2491100 30006 2990500 1385800 1059100 848330 1997000 1966500 1554700 2254800 1294700 2326400 143160 2986700 1317100 1219200 923210 1969800 1961900 1536600 2166200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1390300 2491100 30006 2990500 1385800 1059100 848330 1997000 1966500 1554700 2254800 1294700 2326400 143160 2986700 1317100 1219200 923210 1969800 1961900 1536600 2166200 1 1 1 1 1 1 1 1 1 1 1 61865000 0 61865000 3625 2048 3389 20602 24768 24768 1 EADIDGDGQVNYEEFVQMMTAK Oxidation (M) 2505.0676 0.067570157 599 P0DP25;P0DP24;P0DP23 yes no 0 0 1 0 By MS/MS By matching 1.5 0.5 1 1 1 1 78.647 78.635 3 4.9132E-05 25733 20211116_3428_TMUAki_TMT10x_P_F1 68.88 59.717 2337900 4167800 0 3916200 2443400 4391800 2888900 2084100 1666000 2060600 2596100 2176400 3888100 145820 4020100 2350900 4392900 2869100 2234800 1781300 2013500 2475500 1 1 0 1 1 1 1 1 1 1 1 2337900 4167800 0 3916200 2443400 4391800 2888900 2084100 1666000 2060600 2596100 2176400 3888100 145820 4020100 2350900 4392900 2869100 2234800 1781300 2013500 2475500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1098600000 695550000 403060000 3626 599 3390 20603;20604 24769 24769 577;578 1 EADIDGDGQVNYEEFVQMMTAK Unmodified 2489.0727 0.072655535 599 P0DP25;P0DP24;P0DP23 yes no 0 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 80.021 79.999 3 1.0829E-19 27753 20211116_3429_TMUAki_TMT10x_P_F2 148.91 127.11 10219000 17447000 47546 17002000 12212000 14389000 13947000 9846300 9524500 9815200 13046000 9515000 16278000 872650 17337000 11753000 14718000 13919000 10239000 10008000 9587300 12476000 3 3 2 3 3 3 3 3 3 3 3 4353900 7171200 0 6350600 4520000 8097900 5061300 4428400 4055500 4438000 5493500 4053600 6688400 316490 6562700 4344600 8059400 5074500 4688000 4220800 4334000 5254800 1 1 0 1 1 1 1 1 1 1 1 5865200 10276000 47546 10651000 7692200 6291200 8885600 5417900 5469000 5377200 7552600 5461400 9590000 556160 10774000 7408500 6658400 8844800 5551400 5787200 5253400 7221200 2 2 2 2 2 2 2 2 2 2 2 3442300000 1781300000 1660900000 3627 599 3390 20605;20606;20607;20608 24770;24771;24772 24770 3 EADIDGDGQVNYEEFVQMMTAK 2 Oxidation (M) 2521.0625 0.062484779 599 P0DP25;P0DP24;P0DP23 yes no 0 0 2 0 By MS/MS 2 0.816 1 1 1 3 67.323 67.028 3 1.7008E-10 24091 20211116_3441_TMUAki_TMT10x_S_F3 109.65 101.85 10193000 19269000 312950 17579000 11462000 12938000 11888000 15397000 15381000 15135000 15497000 9492700 17974000 1154500 17983000 11020000 13522000 12145000 15522000 15499000 14793000 14946000 5 5 5 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10193000 19269000 312950 17579000 11462000 12938000 11888000 15397000 15381000 15135000 15497000 9492700 17974000 1154500 17983000 11020000 13522000 12145000 15522000 15499000 14793000 14946000 5 5 5 5 5 5 5 5 5 5 5 1930600000 0 1930600000 3628 599 3390 20609;20610;20611 24773;24774;24775;24776;24777 24777 577;578 5 EAEAAIYHLQLFEELR Unmodified 1930.9789 0.97887721 670 P14618;P14618-3 PKM Pyruvate kinase PKM yes no 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 75.089 74.948 3 2.8472E-11 25690 20211116_3429_TMUAki_TMT10x_P_F2 137.61 125.97 4717400 7760800 136120 7141800 4522200 9318400 5682700 6274600 6288500 6126200 7027500 4393400 7239300 514000 7362100 4373500 9290300 5722300 6528800 6397200 5989300 6756300 3 3 2 3 3 3 3 3 3 3 3 4717400 7760800 136120 7141800 4522200 9318400 5682700 6274600 6288500 6126200 7027500 4393400 7239300 514000 7362100 4373500 9290300 5722300 6528800 6397200 5989300 6756300 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1232800000 1232800000 0 3629 670 3391 20612;20613 24778;24779;24780 24779 3 EAEAAIYHLQLFEELRR Unmodified 2087.08 0.079988241 670 P14618;P14618-3 PKM Pyruvate kinase PKM yes no 0 0 0 1 By MS/MS By MS/MS 4.67 1.75 2 3 3 16 9 4 4 4 31 14 68.239 68.264 3;4 7.1956E-48 19796 20211116_3444_TMUAki_TMT10x_S_F5 254.23 230.19 92357000 163020000 811400 137670000 107400000 171140000 114690000 124480000 127370000 130430000 124060000 85996000 152020000 6398400 142730000 103180000 171230000 116350000 129090000 128900000 127140000 119780000 59 59 21 59 59 59 59 59 59 59 59 55316000 95559000 579650 80569000 61764000 126630000 67979000 74673000 75612000 76641000 71186000 51507000 89110000 3632700 83941000 59400000 125000000 68866000 78603000 76432000 74771000 68808000 44 44 14 44 44 44 44 44 44 44 44 37042000 67466000 231750 57098000 45631000 44504000 46713000 49803000 51755000 53787000 52875000 34489000 62914000 2765700 58794000 43779000 46234000 47483000 50488000 52471000 52367000 50972000 15 15 7 15 15 15 15 15 15 15 15 57627000000 27885000000 29742000000 3630 670 3392 20614;20615;20616;20617;20618;20619;20620;20621;20622;20623;20624;20625;20626;20627;20628;20629;20630;20631;20632;20633;20634;20635;20636;20637;20638;20639;20640;20641;20642;20643;20644;20645;20646;20647;20648;20649;20650;20651;20652;20653;20654;20655;20656;20657;20658 24781;24782;24783;24784;24785;24786;24787;24788;24789;24790;24791;24792;24793;24794;24795;24796;24797;24798;24799;24800;24801;24802;24803;24804;24805;24806;24807;24808;24809;24810;24811;24812;24813;24814;24815;24816;24817;24818;24819;24820;24821;24822;24823;24824;24825;24826;24827;24828;24829;24830;24831;24832;24833;24834;24835;24836;24837;24838;24839;24840;24841;24842;24843 24837 63 EAEAAMFHR Unmodified 1060.476 0.47601366 671 P14618-2 PKM Pyruvate kinase PKM yes yes 0 0 0 0 By MS/MS 3 0 1 1 32.97 32.73 3 0.032563 10130 20211116_3441_TMUAki_TMT10x_S_F3 47.96 29.214 466870 700270 0 706610 487730 467700 515870 568480 630390 565400 658420 434670 653450 34697 716840 468090 493470 525350 572820 637300 552330 634280 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 466870 700270 0 706610 487730 467700 515870 568480 630390 565400 658420 434670 653450 34697 716840 468090 493470 525350 572820 637300 552330 634280 1 1 0 1 1 1 1 1 1 1 1 8062600 0 8062600 3631 671 3393 20659 24844 24844 1 EAEDTQVFGDLPRPR Unmodified 1728.8431 0.84311201 2415 Q96B36;Q96B36-3;Q96B36-2 AKT1S1 Proline-rich AKT1 substrate 1 yes no 0 0 0 1 By MS/MS By MS/MS 3 0 2 1 1 48.515 48.314 3 2.6459E-10 16424 20211116_3441_TMUAki_TMT10x_S_F3 121.79 105.67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3632 2415 3394 20660;20661 24845;24846 24846 2 EAEHHCLLHSPIPVNCPIR Unmodified 2278.1099 0.10992494 2952 Q9NUJ1;Q9NUJ1-2 ABHD10 Mycophenolic acid acyl-glucuronide esterase, mitochondrial yes no 0 0 0 0 By MS/MS 5 0 1 1 37.59 37.736 5 1.7616E-08 8673 20211116_3444_TMUAki_TMT10x_S_F5 111.92 96.289 1050600 1751700 13516 1854100 1033200 969220 1072500 1430800 1472800 1163700 1704800 978210 1634900 85915 1871000 991620 1052300 1098200 1423400 1489100 1147500 1637400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1050600 1751700 13516 1854100 1033200 969220 1072500 1430800 1472800 1163700 1704800 978210 1634900 85915 1871000 991620 1052300 1098200 1423400 1489100 1147500 1637400 2 2 1 2 2 2 2 2 2 2 2 101280000 0 101280000 3633 2952 3395 20662 24847;24848 24848 2 EAEKLESEHPDQAQAILSR Unmodified 2150.0604 0.060375011 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS 3 0 1 1 41.098 40.796 4 2.166E-12 13354 20211116_3441_TMUAki_TMT10x_S_F3 133.92 116.64 567760 889420 11243 1031000 422390 419950 429530 692410 867180 672350 762780 528720 830450 55513 1032600 405870 471630 448870 689640 859350 657480 739060 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 567760 889420 11243 1031000 422390 419950 429530 692410 867180 672350 762780 528720 830450 55513 1032600 405870 471630 448870 689640 859350 657480 739060 1 1 1 1 1 1 1 1 1 1 1 69829000 0 69829000 3634 1475 3396 20663 24849 24849 1 EAELDVNEELDKK Unmodified 1530.7413 0.74133228 1025 P43034 PAFAH1B1 Platelet-activating factor acetylhydrolase IB subunit alpha yes yes 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 49.57 49.37 3 1.2975E-08 16852 20211116_3441_TMUAki_TMT10x_S_F3 116.43 88.782 5911100 9986800 91754 11067000 13425000 11408000 8255600 8141500 7871000 7200200 8963000 5504100 9322800 630080 11219000 12744000 11527000 8632300 8414400 8063000 7070800 8612500 2 2 1 2 2 2 2 2 2 2 2 3322900 5435800 91754 6606400 10299000 8597200 5330900 4160000 3867500 3810600 4966500 3094700 5076500 458710 6686700 9755900 8535800 5621800 4443100 4037600 3736000 4757000 1 1 1 1 1 1 1 1 1 1 1 2588100 4551100 0 4460600 3125400 2810500 2924700 3981500 4003500 3389600 3996500 2409400 4246300 171360 4532200 2988400 2991200 3010500 3971300 4025400 3334800 3855500 1 1 0 1 1 1 1 1 1 1 1 617700000 265650000 352060000 3635 1025 3397 20664;20665;20666 24850;24851;24852 24852 3 EAENPEGEEKEAATLEVERPLPMEVEK Oxidation (M) 3068.4496 0.4495903 1165 P51858;P51858-3;P51858-2 HDGF Hepatoma-derived growth factor yes no 0 0 1 2 By MS/MS By MS/MS 2 0.816 3 3 3 5 4 53.369 53.161 4;5 7.8356E-33 17391 20211116_3439_TMUAki_TMT10x_S_F1 165.48 149.34 18045000 39856000 426300 22497000 44418000 123220000 46878000 172850000 102540000 105520000 64509000 16803000 37125000 1793700 25683000 42664000 120430000 49144000 171230000 100530000 105830000 63407000 12 12 7 12 12 12 12 12 12 12 12 13105000 28783000 378170 15028000 33240000 110200000 40394000 136410000 76494000 83113000 48594000 12204000 26806000 1343100 17726000 32068000 106980000 41717000 135770000 75250000 83369000 47741000 7 7 5 7 7 7 7 7 7 7 7 4939600 11073000 48129 7469000 11178000 13021000 6483300 36443000 26048000 22411000 15915000 4598900 10319000 450520 7957100 10597000 13448000 7427400 35451000 25284000 22466000 15666000 5 5 2 5 5 5 5 5 5 5 5 11642000000 8010300000 3631400000 3636 1165 3398 20667;20668;20669;20670;20671;20672;20673;20674;20675 24853;24854;24855;24856;24857;24858;24859;24860;24861;24862;24863;24864 24861 1551 12 EAENPREVLDQVCYR Unmodified 1876.8738 0.87376021 1810 Q15459;Q15459-2 SF3A1 Splicing factor 3A subunit 1 yes no 0 0 0 1 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 47.601 47.53 3 8.4294E-38 16028 20211116_3441_TMUAki_TMT10x_S_F3 246.34 230.59 11563000 20988000 51482 23891000 20644000 21934000 13984000 17316000 16381000 14794000 16735000 10766000 19595000 1028900 24138000 19623000 22362000 14607000 17763000 16572000 14553000 16133000 6 6 3 6 6 6 6 6 6 6 6 6335200 11639000 48835 13517000 15097000 17506000 10024000 9665200 9121100 8124700 9253100 5898800 10868000 661750 13716000 14349000 17411000 10405000 10176000 9323300 7998500 8922100 3 3 2 3 3 3 3 3 3 3 3 5227800 9349200 2646.8 10374000 5546400 4428600 3959100 7650300 7259900 6669500 7481800 4867100 8727600 367170 10422000 5273700 4950700 4201100 7586400 7249100 6554200 7210600 3 3 1 3 3 3 3 3 3 3 3 4406800000 2786700000 1620100000 3637 1810 3399 20676;20677;20678;20679;20680;20681 24865;24866;24867;24868;24869;24870 24869 6 EAEQMGNELER Oxidation (M) 1320.5616 0.56159378 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 1 0 By MS/MS 1 0 1 1 28.506 28.587 2 0.0076974 7388 20211116_3439_TMUAki_TMT10x_S_F1 69.276 51.95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3638 1741 3400 20682 24871 24871 2349 1 EAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK Unmodified 3310.5268 0.52681154 1889 Q3ZCM7 TUBB8 Tubulin beta-8 chain yes yes 0 0 0 0 By MS/MS By MS/MS 6.06 1.76 1 2 4 5 6 8 9 21 14 69.034 69.038 3;4;5 1.9774E-83 26345 20211116_3446_TMUAki_TMT10x_S_F7 254.09 0 357110000 564140000 4836400 611930000 364400000 352170000 378410000 115920000 97330000 157900000 315060000 332520000 526580000 31037000 617010000 349840000 369480000 374410000 131040000 119040000 152480000 297190000 58 58 41 58 58 58 58 58 58 58 58 188630000 286460000 3095800 309800000 162160000 230840000 191400000 67264000 58243000 89706000 164610000 175650000 267380000 17451000 313220000 156360000 236360000 188500000 77317000 68854000 86687000 155500000 36 36 27 36 36 36 36 36 36 36 36 168480000 277680000 1740600 302130000 202240000 121330000 187010000 48657000 39087000 68192000 150460000 156870000 259190000 13586000 303790000 193480000 133120000 185910000 53723000 50189000 65795000 141690000 22 22 14 22 22 22 22 22 22 22 22 212250000000 104170000000 108080000000 3639 1889 3401 20683;20684;20685;20686;20687;20688;20689;20690;20691;20692;20693;20694;20695;20696;20697;20698;20699;20700;20701;20702;20703;20704;20705;20706;20707;20708;20709;20710;20711;20712;20713;20714;20715;20716;20717 24872;24873;24874;24875;24876;24877;24878;24879;24880;24881;24882;24883;24884;24885;24886;24887;24888;24889;24890;24891;24892;24893;24894;24895;24896;24897;24898;24899;24900;24901;24902;24903;24904;24905;24906;24907;24908;24909;24910;24911;24912;24913;24914;24915;24916;24917;24918;24919;24920;24921;24922;24923;24924;24925;24926;24927;24928;24929 24922 58 EAESSPFVER Unmodified 1149.5302 0.5302173 672 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 35.361 35.277 2 7.5966E-11 8197 20211116_3428_TMUAki_TMT10x_P_F1 204.34 154.21 4289400 7159900 37252 8894500 10210000 6374500 4853300 4985700 6457300 4433300 6866800 3994000 6687400 446860 8913600 9655800 6618100 5252600 5122700 6513500 4352500 6611500 8 8 6 8 8 8 8 8 8 8 8 1789100 2931900 32267 3616000 7696800 4054700 2350000 2030700 2736800 1787200 2930900 1666000 2738300 261140 3647100 7247600 4058100 2675200 2159500 2774200 1755500 2821300 2 2 2 2 2 2 2 2 2 2 2 2500400 4228000 4985.2 5278500 2513300 2319800 2503300 2955000 3720500 2646100 3935900 2327900 3949100 185730 5266500 2408200 2560100 2577400 2963100 3739300 2597000 3790200 6 6 4 6 6 6 6 6 6 6 6 435880000 297670000 138220000 3640 672 3402 20718;20719;20720;20721;20722 24930;24931;24932;24933;24934;24935;24936;24937 24930 8 EAETRAEFAER Unmodified 1307.6106 0.61059288 526;527;525;1413;578;579 P06753-2;P06753-3;P06753-5;P06753-4;P06753-7;P06753-6;P09493-4;P09493;P09493-6;P06753;P09493-5;P67936;P67936-2;P07951;P07951-2;CON__Q3SX28;P07951-3 TPM3;TPM1;TPM4;TPM2 Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain;Tropomyosin beta chain no no 0 0 0 1 By MS/MS 1 0 1 1 29.134 29.214 3 0.079918 7634 20211116_3439_TMUAki_TMT10x_S_F1 44.829 19.974 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3641 526;527;578;525;579;1413 3403 20723 24938 24938 1 EAEVVLCGGTESMSQAPYCVR Oxidation (M) 2358.029 0.029016582 1019 P42765 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 52.636 52.566 3 2.6337E-26 17068 20211116_3430_TMUAki_TMT10x_P_F3 162.77 147.84 4210100 6954200 16184 7688100 5920300 7430300 4595200 6111500 5738800 5660500 6503900 3919900 6491800 271990 7787500 5642100 7555700 4765800 6266800 5815400 5546900 6250400 6 6 2 6 6 6 6 6 6 6 6 2298300 3601700 0 4018500 3896000 5517700 2882600 3202800 2974400 2828200 3443300 2139700 3362300 100440 4092500 3708200 5476600 2979700 3362000 3038600 2777600 3307100 3 3 0 3 3 3 3 3 3 3 3 1911800 3352600 16184 3669600 2024300 1912600 1712700 2908700 2764400 2832300 3060600 1780200 3129500 171560 3694900 1933900 2079200 1786100 2904800 2776800 2769300 2943300 3 3 2 3 3 3 3 3 3 3 3 2518800000 1467300000 1051400000 3642 1019 3404 20724;20725;20726;20727 24939;24940;24941;24942;24943;24944 24939 1317 6 EAEVVLCGGTESMSQAPYCVR Unmodified 2342.0341 0.034101959 1019 P42765 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes yes 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 59.854 59.594 3 1.362E-35 19992 20211116_3430_TMUAki_TMT10x_P_F3 195.97 185.1 1427300 2311400 15274 2288500 1658800 2690200 1723100 1670100 1745900 1820300 1884500 1329100 2156700 132920 2342200 1592900 2692900 1745100 1754000 1780100 1771600 1813700 2 2 1 2 2 2 2 2 2 2 2 1427300 2311400 15274 2288500 1658800 2690200 1723100 1670100 1745900 1820300 1884500 1329100 2156700 132920 2342200 1592900 2692900 1745100 1754000 1780100 1771600 1813700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 989380000 989380000 0 3643 1019 3404 20728;20729 24945;24946 24945 2 EAEYFELPELVR Unmodified 1493.7402 0.74021007 2430 Q96CX2 KCTD12 BTB/POZ domain-containing protein KCTD12 yes yes 0 0 0 0 By MS/MS By MS/MS 2.33 1.15 3 2 2 2 4 5 75.834 75.764 2;3 6.9173E-24 25998 20211116_3429_TMUAki_TMT10x_P_F2 242.49 191.38 40346000 65990000 211970 62506000 47213000 55775000 51006000 38963000 38817000 43064000 50518000 37566000 61562000 3370800 63912000 45361000 56857000 51162000 40587000 40438000 41889000 48371000 12 12 7 12 12 12 12 12 12 12 12 18960000 29443000 57591 27984000 16466000 30639000 21354000 18487000 18195000 19684000 22940000 17653000 27468000 1382300 28691000 15901000 30776000 21307000 19446000 18817000 19175000 21982000 5 5 2 5 5 5 5 5 5 5 5 21386000 36546000 154380 34523000 30747000 25137000 29652000 20476000 20622000 23379000 27578000 19913000 34094000 1988400 35221000 29459000 26082000 29855000 21141000 21621000 22714000 26388000 7 7 5 7 7 7 7 7 7 7 7 6439300000 3257000000 3182200000 3644 2430 3405 20730;20731;20732;20733;20734;20735;20736;20737;20738 24947;24948;24949;24950;24951;24952;24953;24954;24955;24956;24957;24958 24949 12 EAFDLFDADGTGTIDVK Unmodified 1812.8418 0.84177461 994 P41208 CETN2 Centrin-2 yes yes 0 0 0 0 By matching By MS/MS 1 0 2 1 1 78.461 78.439 2 4.5131E-05 27588 20211116_3439_TMUAki_TMT10x_S_F1 87.719 67.516 1747800 3153600 0 3050800 2533800 2253600 2248900 1586200 1533200 1626300 2217200 1627200 2942300 133300 3107700 2420900 2330000 2273900 1647600 1615300 1586700 2117700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1747800 3153600 0 3050800 2533800 2253600 2248900 1586200 1533200 1626300 2217200 1627200 2942300 133300 3107700 2420900 2330000 2273900 1647600 1615300 1586700 2117700 1 1 0 1 1 1 1 1 1 1 1 576430000 294570000 281860000 3645 994 3406 20739;20740 24959 24959 1 EAFGFIER Unmodified 967.47633 0.47633123 346 O75534;O75534-2;O75534-3;O75534-4 CSDE1 Cold shock domain-containing protein E1 yes no 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 53.972 53.805 2 0.014662 16396 20211116_3442_TMUAki_TMT10x_S_F4 77.732 44.47 5251000 9806600 56474 10672000 4943100 5027300 4737800 7459600 6385600 6236800 7751100 4889600 9153800 483660 10741000 4737900 5524300 4867500 7425000 6472600 6141600 7434900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5251000 9806600 56474 10672000 4943100 5027300 4737800 7459600 6385600 6236800 7751100 4889600 9153800 483660 10741000 4737900 5524300 4867500 7425000 6472600 6141600 7434900 2 2 2 2 2 2 2 2 2 2 2 281260000 0 281260000 3646 346 3407 20741;20742 24960;24961 24961 2 EAFLNTEDKGDSLDSVEALIK Unmodified 2293.1325 0.1325369 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS 4 0 1 1 77.272 77.289 3 0.010865 25594 20211116_3431_TMUAki_TMT10x_P_F4 44.541 34.484 10893000 18240000 0 15973000 11468000 18905000 13073000 9125800 9279000 10608000 12646000 10142000 17011000 873890 16499000 11034000 18858000 13059000 9816400 9725300 10299000 12095000 1 1 0 1 1 1 1 1 1 1 1 10893000 18240000 0 15973000 11468000 18905000 13073000 9125800 9279000 10608000 12646000 10142000 17011000 873890 16499000 11034000 18858000 13059000 9816400 9725300 10299000 12095000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1482600000 1482600000 0 3647 1663 3408 20743 24962 24962 1 EAFLQEVWK Unmodified 1148.5866 0.58660996 820 P26640;P26640-2 VARS Valine--tRNA ligase yes no 0 0 0 0 By MS/MS 6 0 1 1 71.509 71.453 2 3.3444E-05 22263 20211116_3434_TMUAki_TMT10x_P_F6 122.26 85.564 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3648 820 3409 20744 24963 24963 1 EAFQLFDR Unmodified 1024.4978 0.49779495 1275 P60660;P60660-2 MYL6 Myosin light polypeptide 6 yes no 0 0 0 0 By MS/MS By MS/MS 3.71 1.03 1 2 2 2 4 3 59.626 59.592 2 0.00041817 18258 20211116_3431_TMUAki_TMT10x_P_F4 140.84 89.963 40968000 69860000 227620 76529000 68741000 82137000 49993000 61339000 64618000 57225000 61898000 38146000 65212000 3968100 77685000 65453000 82862000 52143000 63291000 65001000 56059000 59795000 7 7 6 7 7 7 7 7 7 7 7 26787000 44105000 166340 48775000 52927000 67170000 37889000 39318000 40290000 35766000 38918000 24943000 41172000 2712400 49704000 50379000 66668000 39293000 41275000 40835000 35077000 37585000 5 5 4 5 5 5 5 5 5 5 5 14180000 25755000 61277 27754000 15814000 14967000 12104000 22021000 24328000 21460000 22980000 13204000 24040000 1255600 27982000 15074000 16194000 12850000 22016000 24167000 20982000 22210000 2 2 2 2 2 2 2 2 2 2 2 4668300000 2961600000 1706700000 3649 1275 3410 20745;20746;20747;20748;20749;20750;20751 24964;24965;24966;24967;24968;24969;24970;24971 24967 8 EAFQSVVLPAFEK Unmodified 1463.766 0.76603089 1995 Q6P2E9;Q6P2E9-2 EDC4 Enhancer of mRNA-decapping protein 4 yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.745 1 2 3 3 3 75.664 75.678 2;3 0.00063258 26397 20211116_3446_TMUAki_TMT10x_S_F7 81.709 54.088 16013000 25952000 251070 23476000 21235000 24178000 18145000 21609000 20716000 22062000 21533000 14911000 24206000 1629900 24134000 20299000 24530000 18646000 22114000 20991000 21528000 20746000 4 4 3 4 4 4 4 4 4 4 4 3695200 5980600 0 5380900 3924800 8373300 4295200 4960300 4657300 4972700 4973000 3440600 5578300 304810 5576500 3772300 8268900 4348700 5215900 4733300 4856100 4787500 1 1 0 1 1 1 1 1 1 1 1 12317000 19971000 251070 18095000 17311000 15805000 13849000 16649000 16058000 17089000 16560000 11471000 18628000 1325100 18558000 16526000 16261000 14297000 16898000 16258000 16672000 15959000 3 3 3 3 3 3 3 3 3 3 3 1460200000 447880000 1012300000 3650 1995 3411 20752;20753;20754;20755;20756;20757 24972;24973;24974;24975;24976;24977 24977 6 EAFSLFDK Unmodified 955.4651 0.46509784 599 P0DP25;P0DP24;P0DP23;P27482 CALML3 Calmodulin-like protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 2 2 66.581 66.627 2 0.02471 21380 20211116_3433_TMUAki_TMT10x_P_F5 67.507 25.933 32267000 48779000 5009100 75878000 40154000 54622000 24785000 45449000 42615000 44436000 48967000 30081000 45618000 7453900 75176000 38418000 56750000 26496000 46642000 42799000 43440000 47040000 2 2 2 2 2 2 2 2 2 2 2 16411000 24087000 2340000 38700000 25080000 36388000 9064600 23183000 21849000 21474000 23418000 15298000 22531000 3662800 38414000 23787000 36916000 10428000 24186000 21724000 21043000 22542000 1 1 1 1 1 1 1 1 1 1 1 15856000 24692000 2669100 37177000 15073000 18233000 15720000 22266000 20766000 22962000 25549000 14783000 23087000 3791100 36762000 14631000 19834000 16068000 22456000 21074000 22397000 24498000 1 1 1 1 1 1 1 1 1 1 1 2214000000 1012400000 1201600000 3651 599 3412 20758;20759;20760;20761 24978;24979 24978 2 EAFSLFDKDGDGTITTK Unmodified 1843.884 0.88397377 599 P0DP25;P0DP24;P0DP23 yes no 0 0 0 1 By MS/MS By MS/MS 5.66 1.65 1 1 2 3 4 8 12 1 17 15 52.388 52.441 2;3;4 5.2778E-41 19534 20211116_3434_TMUAki_TMT10x_P_F6 225.09 201.34 432390000 734620000 4030000 757150000 540760000 677110000 451840000 439430000 447950000 440770000 532070000 402610000 685560000 38267000 769630000 516330000 689390000 462850000 458820000 458870000 430430000 510660000 39 39 23 39 39 39 39 39 39 39 39 236050000 396450000 1308800 399160000 360670000 514140000 288150000 237920000 245650000 237660000 284110000 219780000 369940000 20535000 408730000 343950000 510470000 294760000 255830000 253140000 232120000 272880000 25 25 13 25 25 25 25 25 25 25 25 196340000 338170000 2721200 357990000 180090000 162970000 163690000 201510000 202300000 203110000 247960000 182820000 315620000 17732000 360900000 172370000 178920000 168090000 202990000 205740000 198300000 237790000 14 14 10 14 14 14 14 14 14 14 14 73953000000 41064000000 32889000000 3652 599 3413 20762;20763;20764;20765;20766;20767;20768;20769;20770;20771;20772;20773;20774;20775;20776;20777;20778;20779;20780;20781;20782;20783;20784;20785;20786;20787;20788;20789;20790;20791;20792;20793 24980;24981;24982;24983;24984;24985;24986;24987;24988;24989;24990;24991;24992;24993;24994;24995;24996;24997;24998;24999;25000;25001;25002;25003;25004;25005;25006;25007;25008;25009;25010;25011;25012;25013;25014;25015;25016;25017;25018;25019;25020;25021;25022;25023 24994 44 EAFTNKPNVFTVVTR Unmodified 1721.9101 0.91006937 328 O75369;O75369-8;O75369-6;O75369-3;O75369-2;O75369-9;O75369-5;O75369-4;O75369-7 FLNB Filamin-B yes no 0 0 0 1 By MS/MS By MS/MS 3 0 2 1 1 57.412 57.095 3 1.8865E-09 20007 20211116_3441_TMUAki_TMT10x_S_F3 124.18 101.06 13744000 23030000 208840 23614000 17206000 18894000 13736000 18786000 18022000 17377000 18904000 12798000 21491000 1382600 23979000 16424000 19536000 14247000 19064000 18178000 17029000 18209000 3 3 3 3 3 3 3 3 3 3 3 4224100 6857100 36978 6781300 6462500 9473700 5661300 5609300 5570100 4946200 5310100 3933300 6398200 416020 6963600 6178600 9398300 5781600 5878300 5661400 4858000 5130500 1 1 1 1 1 1 1 1 1 1 1 9519400 16173000 171870 16833000 10744000 9419800 8074900 13177000 12452000 12431000 13594000 8864800 15093000 966550 17015000 10245000 10138000 8465800 13186000 12517000 12171000 13078000 2 2 2 2 2 2 2 2 2 2 2 921400000 417400000 503990000 3653 328 3414 20794;20795 25024;25025;25026 25025 3 EAFVHVVTLEDMR Oxidation (M) 1560.7606 0.76062794 2949 Q9NTZ6 RBM12 RNA-binding protein 12 yes yes 0 0 1 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 50.044 50.031 3 0.00046299 14804 20211116_3442_TMUAki_TMT10x_S_F4 79.639 71.126 11111000 18093000 126190 17350000 19322000 23991000 13752000 16766000 15065000 14324000 14688000 10344000 16880000 905490 17851000 18379000 23868000 14281000 17338000 15255000 14090000 14181000 5 5 2 5 5 5 5 5 5 5 5 9482000 14925000 126190 14319000 17435000 22327000 12177000 14488000 13005000 12409000 12421000 8827900 13924000 796510 14770000 16579000 22075000 12652000 15064000 13174000 12205000 12001000 4 4 2 4 4 4 4 4 4 4 4 1628500 3168600 0 3030800 1887500 1663700 1574900 2278400 2059600 1915400 2266700 1516000 2956100 108980 3081200 1800100 1793000 1628900 2274600 2081400 1885600 2180200 1 1 0 1 1 1 1 1 1 1 1 1926400000 1433300000 493030000 3654 2949 3415 20796;20797;20798;20799;20800 25027;25028;25029;25030;25031;25032 25032 3039 6 EAGAGGLAIAVEGPSK Unmodified 1425.7464 0.74635808 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 53.725 53.779 3 5.1309E-11 16389 20211116_3442_TMUAki_TMT10x_S_F4 134.88 110.69 9719400 15856000 163800 18699000 11451000 12007000 9161200 11535000 10910000 10729000 13031000 9050700 14806000 952360 18776000 10930000 12634000 9466500 11728000 11097000 10512000 12505000 4 4 3 4 4 4 4 4 4 4 4 3069200 4416700 0 5482700 4876600 5736300 3156600 3232500 2966900 3177800 3551000 2857500 4125200 249430 5521700 4630700 5771800 3285900 3411300 3047300 3105900 3407400 1 1 0 1 1 1 1 1 1 1 1 6650100 11439000 163800 13217000 6574500 6270600 6004600 8302500 7942700 7551300 9479700 6193200 10681000 702940 13254000 6299500 6862100 6180500 8316400 8050100 7406000 9097200 3 3 3 3 3 3 3 3 3 3 3 1323100000 699990000 623070000 3655 755 3416 20801;20802;20803;20804;20805 25033;25034;25035;25036;25037 25035 5 EAGAGGLAIAVEGPSKAEISFEDRK Unmodified 2501.2762 0.27618145 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 2 By MS/MS By MS/MS 4 1.29 1 1 2 1 1 3 3 59.45 59.39 4 4.0487E-39 18157 20211116_3431_TMUAki_TMT10x_P_F4 198.64 164.93 53947000 94669000 1457900 80078000 70650000 91014000 64817000 71995000 73266000 71640000 76191000 50240000 88282000 5426800 82887000 67681000 91618000 66313000 74149000 74269000 69982000 73409000 11 11 9 11 11 11 11 11 11 11 11 22897000 38616000 521090 32377000 28755000 53553000 31840000 32565000 32042000 30998000 31912000 21323000 36009000 2410000 33787000 27677000 52778000 32142000 34122000 32584000 30339000 30788000 6 6 5 6 6 6 6 6 6 6 6 31050000 56053000 936780 47702000 41895000 37461000 32977000 39430000 41223000 40642000 44280000 28917000 52272000 3016700 49100000 40003000 38839000 34172000 40027000 41685000 39643000 42621000 5 5 4 5 5 5 5 5 5 5 5 7663900000 3019900000 4643900000 3656 755 3417 20806;20807;20808;20809;20810;20811 25038;25039;25040;25041;25042;25043;25044;25045;25046;25047;25048 25041 11 EAGAGGLSIAVEGPSK Unmodified 1441.7413 0.7412727 1703;328 Q14315;Q14315-2;O75369;O75369-8;O75369-6;O75369-3;O75369-2;O75369-9;O75369-7 FLNC;FLNB Filamin-C;Filamin-B no no 0 0 0 0 By matching By MS/MS 4 0 2 1 1 52.057 52.179 3 1.7486E-05 15760 20211116_3442_TMUAki_TMT10x_S_F4 93.424 77.171 1832900 3376100 45134 3725000 1880900 1652100 1742500 2588900 2722900 2500600 3054500 1707000 3151600 194700 3744400 1802800 1832000 1805100 2582300 2739000 2445900 2936300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1832900 3376100 45134 3725000 1880900 1652100 1742500 2588900 2722900 2500600 3054500 1707000 3151600 194700 3744400 1802800 1832000 1805100 2582300 2739000 2445900 2936300 1 1 1 1 1 1 1 1 1 1 1 404770000 274820000 129960000 3657 1703;328 3418 20812;20813 25049 25049 1 EAGDVCYADVYR Unmodified 1416.598 0.59797928 1543 Q07955;Q07955-3;Q07955-2 SRSF1 Serine/arginine-rich splicing factor 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 2 4 4 5 5 43.989 43.855 2;3 1.108E-38 13089 20211116_3429_TMUAki_TMT10x_P_F2 288.42 166.57 18186000 27058000 148000 34762000 46090000 37370000 22286000 32119000 31376000 23977000 32009000 16933000 25277000 1951400 34958000 43598000 37792000 24131000 32678000 31544000 23753000 30859000 11 11 4 11 11 11 11 11 11 11 11 13488000 19531000 148000 23071000 42857000 34348000 18798000 23241000 24655000 17079000 23279000 12559000 18238000 1635300 23455000 40496000 34046000 20507000 24006000 24777000 16934000 22499000 6 6 4 6 6 6 6 6 6 6 6 4698000 7526900 0 11691000 3232900 3022400 3487400 8877800 6720400 6898600 8729900 4373900 7039000 316010 11503000 3102800 3745300 3624200 8671600 6766700 6819100 8359200 5 5 0 5 5 5 5 5 5 5 5 3750400000 2548100000 1202300000 3658 1543 3419 20814;20815;20816;20817;20818;20819;20820;20821;20822;20823 25050;25051;25052;25053;25054;25055;25056;25057;25058;25059;25060 25051 11 EAGDVCYADVYRDGTGVVEFVR Unmodified 2476.1329 0.13288803 1543 Q07955;Q07955-3;Q07955-2 SRSF1 Serine/arginine-rich splicing factor 1 yes no 0 0 0 1 By MS/MS By MS/MS 3.35 1.28 2 3 2 7 3 12 5 64.782 64.672 3;4 3.6157E-102 23410 20211116_3441_TMUAki_TMT10x_S_F3 316.28 287.78 88332000 159750000 626820 143380000 129230000 130820000 104170000 119060000 110160000 107680000 117630000 82245000 149000000 7766100 147240000 123280000 133780000 107160000 121310000 112070000 105640000 113240000 29 29 11 29 29 29 29 29 29 29 29 35601000 61893000 346290 53561000 37228000 73897000 41746000 47003000 43907000 43113000 46898000 33147000 57722000 2836500 55534000 35801000 73423000 42175000 49031000 44679000 42266000 45148000 18 18 7 18 18 18 18 18 18 18 18 52731000 97858000 280530 89820000 92007000 56920000 62426000 72057000 66253000 64570000 70734000 49098000 91282000 4929600 91707000 87477000 60356000 64987000 72275000 67392000 63371000 68096000 11 11 4 11 11 11 11 11 11 11 11 29863000000 15774000000 14089000000 3659 1543 3420 20824;20825;20826;20827;20828;20829;20830;20831;20832;20833;20834;20835;20836;20837;20838;20839;20840 25061;25062;25063;25064;25065;25066;25067;25068;25069;25070;25071;25072;25073;25074;25075;25076;25077;25078;25079;25080;25081;25082;25083;25084;25085;25086;25087;25088;25089;25090 25084 30 EAGDVCYADVYRDGTGVVEFVRK Unmodified 2604.2279 0.22785104 1543 Q07955;Q07955-3;Q07955-2 SRSF1 Serine/arginine-rich splicing factor 1 yes no 0 0 0 2 By MS/MS 6 0 1 1 62.78 62.759 4 1.8274E-27 19097 20211116_3445_TMUAki_TMT10x_S_F6 163.18 152.79 7785300 14182000 152100 12582000 12226000 8408000 7589800 11659000 10352000 10247000 10869000 7250100 13227000 849410 12887000 11616000 8896000 8026500 11648000 10429000 10066000 10469000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7785300 14182000 152100 12582000 12226000 8408000 7589800 11659000 10352000 10247000 10869000 7250100 13227000 849410 12887000 11616000 8896000 8026500 11648000 10429000 10066000 10469000 2 2 2 2 2 2 2 2 2 2 2 701480000 0 701480000 3660 1543 3421 20841 25091;25092 25091 2 EAGELKPEEEITVGPVQK Unmodified 1952.0102 0.01023692 1206 P53618 COPB1 Coatomer subunit beta yes yes 0 0 0 1 By MS/MS By MS/MS 4 0.632 1 3 1 3 2 52.777 52.819 3;4 3.8981E-13 16016 20211116_3442_TMUAki_TMT10x_S_F4 140.16 116.12 15200000 24909000 158530 29343000 23537000 26687000 16548000 28298000 28056000 24081000 24509000 14153000 23260000 1482100 29582000 22400000 27387000 17507000 28564000 27912000 23692000 23752000 6 6 4 6 6 6 6 6 6 6 6 7576300 11809000 72555 14203000 17746000 20940000 11393000 14013000 13767000 11739000 11640000 7054600 11028000 812710 14421000 16859000 20761000 11962000 14529000 13826000 11558000 11295000 3 3 2 3 3 3 3 3 3 3 3 7623300 13100000 85980 15141000 5791200 5746800 5155200 14285000 14289000 12342000 12868000 7098600 12231000 669390 15162000 5541000 6625800 5545200 14035000 14086000 12134000 12458000 3 3 2 3 3 3 3 3 3 3 3 2588000000 1726800000 861220000 3661 1206 3422 20842;20843;20844;20845;20846 25093;25094;25095;25096;25097;25098 25097 6 EAGEQGDIEPR Unmodified 1199.5418 0.54184461 1616 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 29.89 29.923 2 7.2697E-30 5972 20211116_3428_TMUAki_TMT10x_P_F1 267.76 228.75 589140 1027600 0 835600 669480 713620 623080 349820 447850 396130 629480 548540 958120 48906 864190 640690 726340 629010 375420 469720 384970 601610 2 2 0 2 2 2 2 2 2 2 2 268740 476610 0 385930 348340 433430 269180 174400 208000 185600 295000 250220 444390 22719 400830 331970 432800 275290 190720 217370 180800 281880 1 1 0 1 1 1 1 1 1 1 1 320400 550970 0 449670 321140 280190 353900 175420 239850 210530 334480 298320 513730 26187 463360 308720 293540 353730 184700 252350 204170 319730 1 1 0 1 1 1 1 1 1 1 1 57755000 25580000 32175000 3662 1616 3423 20847;20848 25099;25100 25099 2 EAGFLRPVTIFGPIADVAR Unmodified 2028.1156 0.11564547 1537 Q07157;Q07157-2 TJP1 Tight junction protein ZO-1 yes no 0 0 0 1 By MS/MS 2 0 1 1 77.262 77.186 3 1.325E-23 26623 20211116_3429_TMUAki_TMT10x_P_F2 160.77 140.86 2557000 4611300 80315 3811600 2462900 5074300 2982300 2517300 2889100 2966700 3469300 2381400 4299800 285530 3963900 2379400 5034000 2995000 2702000 2963900 2879000 3328700 1 1 1 1 1 1 1 1 1 1 1 2557000 4611300 80315 3811600 2462900 5074300 2982300 2517300 2889100 2966700 3469300 2381400 4299800 285530 3963900 2379400 5034000 2995000 2702000 2963900 2879000 3328700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 717410000 717410000 0 3663 1537 3424 20849 25101 25101 1 EAGGGGVGGPGAK Unmodified 1012.4938 0.49377221 2232 Q8NC51;Q8NC51-3;Q8NC51-2;Q8NC51-4 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 0 0 0 0 By MS/MS 3 0 1 1 30.559 30.304 3 0.0047556 9206 20211116_3441_TMUAki_TMT10x_S_F3 61.11 38.231 228280 363890 1880.5 395760 255600 226790 280370 225880 266720 211240 321020 212570 339660 21061 398960 245820 241440 282680 229260 273870 206910 307990 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 228280 363890 1880.5 395760 255600 226790 280370 225880 266720 211240 321020 212570 339660 21061 398960 245820 241440 282680 229260 273870 206910 307990 1 1 1 1 1 1 1 1 1 1 1 22900000 0 22900000 3664 2232 3425 20850 25102 25102 1 EAGGNYTPALTEQEVYAQVAR Unmodified 2266.0866 0.086589761 2558 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a yes yes 0 0 0 0 By MS/MS By matching 3 0 2 1 1 62.426 62.072 3 3.4361E-19 21050 20211116_3430_TMUAki_TMT10x_P_F3 141.97 126.03 2090300 3454500 15136 3279300 2554500 4308700 2709600 2880500 2542400 2689400 2732300 1946300 3222800 185290 3373200 2453600 4293800 2735100 2995100 2600500 2634500 2629900 2 2 1 2 2 2 2 2 2 2 2 2090300 3454500 15136 3279300 2554500 4308700 2709600 2880500 2542400 2689400 2732300 1946300 3222800 185290 3373200 2453600 4293800 2735100 2995100 2600500 2634500 2629900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 574400000 294390000 280010000 3665 2558 3426 20851;20852 25103;25104 25103 2 EAGLVAQHPPAR Unmodified 1244.6626 0.66256887 2636 Q9BRJ6 C7orf50 Uncharacterized protein C7orf50 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 29.466 29.354 3 8.3667E-07 8810 20211116_3441_TMUAki_TMT10x_S_F3 119.74 103.07 342330 564190 0 460350 408150 591750 367290 424580 429080 388060 451560 318720 526060 26033 478930 390110 590980 376610 439030 434600 380500 434900 2 2 0 2 2 2 2 2 2 2 2 222610 361920 0 285840 305740 484370 258800 329580 327770 280290 305680 207270 337430 18926 299950 291930 477720 267110 341430 329650 275780 295570 1 1 0 1 1 1 1 1 1 1 1 119710 202270 0 174510 102410 107390 108480 95007 101310 107770 145870 111440 188640 7106.6 178980 98177 113260 109500 97604 104960 104720 139340 1 1 0 1 1 1 1 1 1 1 1 21894000 17025000 4869200 3666 2636 3427 20853;20854 25105;25106 25106 2 EAGNINQSLLTLGR Unmodified 1484.7947 0.79470526 1184 P52732 KIF11 Kinesin-like protein KIF11 yes yes 0 0 0 0 By MS/MS 6 0 1 1 57.715 57.785 2 1.5644E-18 16640 20211116_3434_TMUAki_TMT10x_P_F6 161.33 134.95 5898900 8566100 22828 9338000 7189000 11108000 6600600 5452700 6160500 6376400 5810000 5491600 7996000 403590 9498300 6871600 11080000 6712400 5857000 6274000 6189500 5615600 2 2 1 2 2 2 2 2 2 2 2 5898900 8566100 22828 9338000 7189000 11108000 6600600 5452700 6160500 6376400 5810000 5491600 7996000 403590 9498300 6871600 11080000 6712400 5857000 6274000 6189500 5615600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 545680000 545680000 0 3667 1184 3428 20855 25107;25108 25107 2 EAGSQKDENLALYVENQFR Unmodified 2210.0604 0.060375011 480 P02786 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes yes 0 0 0 1 By MS/MS By MS/MS 2.71 1.03 1 2 2 2 4 3 66.566 66.371 3 3.4307E-51 20990 20211116_3440_TMUAki_TMT10x_S_F2 235.26 205.5 73449000 129140000 291810 126710000 80253000 119970000 80970000 64160000 58352000 65026000 83971000 68385000 120500000 5721700 129330000 76938000 121380000 81394000 68076000 61262000 63472000 80211000 11 11 5 11 11 11 11 11 11 11 11 58385000 101350000 267370 99681000 62719000 106330000 64196000 50970000 47068000 51367000 65912000 54359000 94567000 4444100 101910000 60145000 106670000 64510000 54629000 49302000 50152000 63000000 8 8 3 8 8 8 8 8 8 8 8 15064000 27790000 24438 27026000 17534000 13637000 16774000 13190000 11283000 13659000 18058000 14026000 25928000 1277600 27425000 16793000 14708000 16884000 13447000 11959000 13321000 17211000 3 3 2 3 3 3 3 3 3 3 3 8561000000 4994900000 3566100000 3668 480 3429 20856;20857;20858;20859;20860;20861;20862 25109;25110;25111;25112;25113;25114;25115;25116;25117;25118;25119 25117 11 EAGTKEEPVTADVINPMALR Oxidation (M) 2156.0783 0.078333261 207 O43290 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 0 0 1 1 By MS/MS 4 0 1 1 50.608 50.771 3 0.023486 14648 20211116_3431_TMUAki_TMT10x_P_F4 42.618 24.037 1682600 3068000 0 3249300 3347300 4931400 2591400 3273300 3420400 2778800 2678400 1566400 2863400 131390 3327200 3188500 4882800 2693800 3396900 3417100 2734300 2606700 1 1 0 1 1 1 1 1 1 1 1 1682600 3068000 0 3249300 3347300 4931400 2591400 3273300 3420400 2778800 2678400 1566400 2863400 131390 3327200 3188500 4882800 2693800 3396900 3417100 2734300 2606700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 680200000 680200000 0 3669 207 3430 20863 25120 25120 163 1 EAGVFVPR Unmodified 873.47085 0.47085192 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 By MS/MS By MS/MS 3.78 1.31 2 2 2 2 1 4 5 39.522 39.538 2 0.0011175 10318 20211116_3431_TMUAki_TMT10x_P_F4 127.84 92.951 20666000 32014000 92067 34516000 41008000 37129000 23087000 29092000 31017000 24595000 28398000 19241000 29882000 1971800 35074000 38868000 37483000 24600000 29850000 31115000 24206000 27475000 10 10 6 10 10 10 10 10 10 10 10 14079000 21369000 49149 22716000 34511000 31524000 17241000 19193000 20876000 16810000 18586000 13109000 19944000 1401000 23211000 32654000 31294000 18504000 20065000 20997000 16516000 18000000 6 6 3 6 6 6 6 6 6 6 6 6586200 10645000 42917 11800000 6496300 5604900 5845900 9898900 10142000 7785300 9811800 6132600 9937500 570810 11863000 6214300 6188500 6096700 9784500 10118000 7690600 9475300 4 4 3 4 4 4 4 4 4 4 4 1670300000 931880000 738380000 3670 1200 3431 20864;20865;20866;20867;20868;20869;20870;20871;20872 25121;25122;25123;25124;25125;25126;25127;25128;25129;25130 25123 10 EAHEPLAVADAK Unmodified 1249.6303 0.63026569 3254 Q9Y2X3 NOP58 Nucleolar protein 58 yes yes 0 0 0 0 By MS/MS 3 0 1 1 34.924 34.685 3 5.8496E-12 10889 20211116_3441_TMUAki_TMT10x_S_F3 126.12 116.69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3671 3254 3432 20873 25131 25131 1 EAHLPPGAMAAVGLSWEECK Oxidation (M) 2168.0031 0.0030598275 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 1 0 By MS/MS 5.5 0.5 1 1 2 57.119 57.25 3 4.4412E-11 17495 20211116_3433_TMUAki_TMT10x_P_F5 113.47 100.29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3672 1092 3433 20874;20875 25132;25133 25132 1422 2 EAHLPPGAMAAVGLSWEECK Unmodified 2152.0081 0.0081452054 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 65.548 65.588 3 7.636E-08 21013 20211116_3433_TMUAki_TMT10x_P_F5 100.02 89.683 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3673 1092 3433 20876;20877 25134;25135 25134 2 EAHQLFLEPEVLDPESVELK Unmodified 2321.1791 0.17909316 978 P39748;P39748-2 FEN1 Flap endonuclease 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.85 1.24 4 6 11 3 2 1 9 18 75.493 75.424 3;4 1.4744E-24 27426 20211116_3441_TMUAki_TMT10x_S_F3 167.63 143.34 121620000 200240000 848470 186420000 131300000 182830000 147180000 122980000 121680000 129720000 148150000 113240000 186790000 9977400 191100000 126310000 185130000 147670000 128260000 125840000 126420000 142100000 29 29 15 29 29 29 29 29 29 29 29 69425000 112620000 553970 104080000 63361000 123180000 77503000 70238000 69709000 72955000 81633000 64644000 105050000 6012300 107060000 61131000 123110000 77634000 74166000 71681000 71140000 78380000 16 16 10 16 16 16 16 16 16 16 16 52192000 87620000 294500 82341000 67937000 59651000 69672000 52742000 51971000 56768000 66520000 48595000 81739000 3965000 84035000 65177000 62013000 70032000 54093000 54162000 55277000 63719000 13 13 5 13 13 13 13 13 13 13 13 38823000000 21528000000 17295000000 3674 978 3434 20878;20879;20880;20881;20882;20883;20884;20885;20886;20887;20888;20889;20890;20891;20892;20893;20894;20895;20896;20897;20898;20899;20900;20901;20902;20903;20904 25136;25137;25138;25139;25140;25141;25142;25143;25144;25145;25146;25147;25148;25149;25150;25151;25152;25153;25154;25155;25156;25157;25158;25159;25160;25161;25162;25163;25164;25165;25166;25167;25168;25169;25170;25171;25172;25173;25174 25160 39 EAIDSPVSFLALHNQIR Unmodified 1909.0058 0.005760665 2376 Q92900;Q92900-2 UPF1 Regulator of nonsense transcripts 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 64.83 65.187 3 2.0917E-36 22042 20211116_3446_TMUAki_TMT10x_S_F7 213.83 201.81 13184000 23048000 36882 21429000 17094000 22614000 16110000 17322000 15805000 16363000 19244000 12274000 21500000 1016800 21993000 16357000 22846000 16383000 17850000 16214000 16020000 18458000 4 4 1 4 4 4 4 4 4 4 4 6323600 9902000 36882 9861400 7475000 14087000 8218300 7801500 7215700 7312200 8154800 5887400 9239500 479960 10126000 7182200 13949000 8266300 8234600 7418000 7161700 7837600 2 2 1 2 2 2 2 2 2 2 2 6860300 13146000 0 11567000 9618800 8526600 7891700 9520400 8588800 9050500 11089000 6387100 12261000 536790 11866000 9175000 8896300 8116800 9615500 8795900 8858600 10620000 2 2 0 2 2 2 2 2 2 2 2 1824500000 1182500000 642030000 3675 2376 3435 20905;20906;20907;20908 25175;25176;25177;25178;25179 25179 5 EAIEGTYIDKK Unmodified 1265.6503 0.65033243 1348 P62280 RPS11 40S ribosomal protein S11 yes yes 0 0 0 1 By MS/MS By MS/MS 4.33 1.11 2 1 2 1 3 3 43.388 43.522 3 5.9737E-08 11752 20211116_3431_TMUAki_TMT10x_P_F4 120.53 94.486 18654000 27982000 72039 30397000 42248000 33800000 23496000 26450000 27403000 21752000 26795000 17369000 26120000 1831300 30891000 40035000 34058000 24934000 27123000 27685000 21438000 25867000 5 5 3 5 5 5 5 5 5 5 5 12058000 17926000 28591 19768000 35427000 28015000 16637000 17736000 18197000 14187000 17230000 11227000 16734000 1240800 20160000 33491000 27800000 17907000 18445000 18410000 14002000 16651000 3 3 1 3 3 3 3 3 3 3 3 6596100 10056000 43448 10629000 6820900 5785000 6858600 8714400 9205700 7564800 9565400 6142000 9385500 590510 10731000 6543800 6258000 7027600 8678000 9275200 7435500 9216300 2 2 2 2 2 2 2 2 2 2 2 791740000 213370000 578370000 3676 1348 3436 20909;20910;20911;20912;20913;20914 25180;25181;25182;25183;25184;25185;25186;25187 25181 8 EAIESAIGGNAYQHSK Unmodified 1673.8009 0.80091285 1400 P63172 DYNLT1 Dynein light chain Tctex-type 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 42.051 42.133 3 0.0051948 10288 20211116_3434_TMUAki_TMT10x_P_F6 57.197 43.518 8472600 13941000 0 17977000 19502000 20031000 10630000 14715000 14326000 11301000 13084000 7886900 13023000 622870 18085000 18461000 20160000 11360000 15127000 14368000 11178000 12660000 4 4 0 4 4 4 4 4 4 4 4 5638700 8883200 0 11398000 17187000 18391000 9030100 9343900 9318400 7424300 9063000 5248500 8298400 422960 11555000 16261000 18101000 9595100 9899400 9458200 7330100 8750700 3 3 0 3 3 3 3 3 3 3 3 2833900 5057700 0 6578800 2314700 1639900 1599600 5371100 5007200 3876400 4021100 2638400 4725100 199910 6530200 2199700 2059100 1765400 5227900 4909900 3847500 3909600 1 1 0 1 1 1 1 1 1 1 1 311100000 214590000 96517000 3677 1400 3437 20915;20916;20917 25188;25189;25190;25191 25190 4 EAIIPGSVYDR Unmodified 1218.6245 0.62445203 2376 Q92900;Q92900-2 UPF1 Regulator of nonsense transcripts 1 yes no 0 0 0 0 By MS/MS 4 0 1 1 48.543 48.697 2 0.0051021 14270 20211116_3442_TMUAki_TMT10x_S_F4 69.276 38.202 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3678 2376 3438 20918 25192 25192 1 EAIIVGSIITK Unmodified 1142.6911 0.69107503 1669 Q13895 BYSL Bystin yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 66.424 66.677 2;3 3.902E-14 22137 20211116_3435_TMUAki_TMT10x_P_F7 154.24 129.91 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3679 1669 3439 20919;20920 25193;25194 25193 2 EAILAIHK Unmodified 893.53345 0.53345218 235 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 By MS/MS By MS/MS 6.17 1.07 2 2 1 1 2 4 43.022 43.195 3 0.035201 10689 20211116_3434_TMUAki_TMT10x_P_F6 49.423 9.3781 12238000 18489000 14898 18891000 14988000 15997000 12918000 11147000 11274000 11351000 14495000 11395000 17254000 1024100 19200000 14318000 16366000 13161000 11585000 11656000 11077000 13883000 5 5 2 5 5 5 5 5 5 5 5 7119900 10528000 8738.2 10608000 9344900 11385000 7400000 5800800 6039400 6320300 7949700 6629300 9823700 616890 10828000 8911200 11425000 7565700 6195200 6271400 6151300 7609700 2 2 1 2 2 2 2 2 2 2 2 5118600 7961400 6160.1 8282800 5643400 4612100 5518300 5346500 5234700 5030500 6545500 4765700 7430000 407210 8372200 5406400 4941400 5595200 5389400 5384300 4926100 6273600 3 3 1 3 3 3 3 3 3 3 3 2153400000 1077300000 1076100000 3680 235 3440 20921;20922;20923;20924;20925;20926 25195;25196;25197;25198 25196 4 EAILDIITSR Unmodified 1129.6343 0.63428844 548 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 By MS/MS 5 0 1 1 71.736 71.747 2 0.0017082 22476 20211116_3444_TMUAki_TMT10x_S_F5 85.622 56.895 11792000 18510000 131280 21104000 12568000 10684000 13430000 8885800 8687700 10133000 13714000 10980000 17282000 1087300 21190000 12079000 11487000 13431000 9162500 9224100 9845100 13074000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11792000 18510000 131280 21104000 12568000 10684000 13430000 8885800 8687700 10133000 13714000 10980000 17282000 1087300 21190000 12079000 11487000 13431000 9162500 9224100 9845100 13074000 3 3 2 3 3 3 3 3 3 3 3 363870000 0 363870000 3681 548 3441 20927 25199;25200;25201 25201 3 EAINLLEPMTNDPVNYVR Oxidation (M) 2103.0307 0.030654787 2575 Q99460;Q99460-2 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 1 0 By MS/MS By MS/MS 3.8 0.748 2 2 1 3 2 69.36 69.156 3 2.9648E-08 22189 20211116_3431_TMUAki_TMT10x_P_F4 108.77 97.327 13618000 23157000 45337 21599000 15968000 25373000 16733000 18371000 15924000 18306000 19133000 12677000 21602000 927920 22201000 15315000 25458000 16908000 19030000 16349000 17881000 18358000 8 8 3 8 8 8 8 8 8 8 8 9488400 15691000 32506 14401000 10431000 20581000 11981000 13040000 11071000 12585000 13298000 8833000 14637000 593760 14875000 10028000 20416000 12044000 13625000 11382000 12310000 12759000 5 5 2 5 5 5 5 5 5 5 5 4129100 7465100 12830 7198100 5536400 4792300 4752300 5331500 4852500 5721400 5835300 3844300 6964800 334150 7326200 5287100 5042600 4864600 5405200 4967000 5571700 5598700 3 3 1 3 3 3 3 3 3 3 3 2041700000 1003500000 1038200000 3682 2575 3442 20928;20929;20930;20931;20932 25202;25203;25204;25205;25206;25207;25208;25209;25210 25204 2803 9 EAINLLEPMTNDPVNYVR Unmodified 2087.0357 0.035740164 2575 Q99460;Q99460-2 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 0 0 By MS/MS 5 0 1 1 77.243 77.262 2 0.00019346 25819 20211116_3433_TMUAki_TMT10x_P_F5 77.527 61.955 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3683 2575 3442 20933 25211 25211 1 EAINVEQAFQTIAR Unmodified 1588.8209 0.82092001 1151 P51149 RAB7A Ras-related protein Rab-7a yes yes 0 0 0 0 By MS/MS By MS/MS 3.92 1.11 1 4 3 3 1 4 8 71.772 71.64 2;3 4.5675E-14 23719 20211116_3442_TMUAki_TMT10x_S_F4 148.57 127.2 31525000 52769000 440660 49389000 38292000 48496000 36294000 34820000 33691000 34545000 40804000 29355000 49227000 2734800 50610000 36684000 49152000 36838000 36084000 34641000 33750000 39142000 14 14 9 14 14 14 14 14 14 14 14 13660000 21368000 155790 20440000 15273000 28305000 16000000 16254000 15678000 15654000 17888000 12719000 19936000 928060 21036000 14664000 28079000 16182000 17116000 16042000 15313000 17187000 7 7 4 7 7 7 7 7 7 7 7 17865000 31401000 284860 28949000 23019000 20191000 20294000 18566000 18013000 18891000 22916000 16636000 29291000 1806700 29575000 22020000 21073000 20657000 18968000 18599000 18437000 21955000 7 7 5 7 7 7 7 7 7 7 7 7931300000 3102000000 4829300000 3684 1151 3443 20934;20935;20936;20937;20938;20939;20940;20941;20942;20943;20944;20945 25212;25213;25214;25215;25216;25217;25218;25219;25220;25221;25222;25223;25224;25225;25226;25227 25222 16 EAISLVCEAVPGAKGATR Carbamidomethyl (C) 1884.9727 0.97274598 850 P29353;P29353-2;P29353-3;P29353-7;P29353-6 SHC1 SHC-transforming protein 1 yes no 0 1 0 1 By MS/MS 5 0 1 1 46.153 46.307 4 0.052103 11996 20211116_3444_TMUAki_TMT10x_S_F5 44.005 22.946 3373100 5546900 63579 7697300 1985200 2340200 1612500 4803200 5663800 4538200 5241200 3141100 5183900 319470 7620500 1898000 2769800 1780500 4751400 5569700 4443200 5069000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3373100 5546900 63579 7697300 1985200 2340200 1612500 4803200 5663800 4538200 5241200 3141100 5183900 319470 7620500 1898000 2769800 1780500 4751400 5569700 4443200 5069000 1 1 1 1 1 1 1 1 1 1 1 1116000000 0 1116000000 3685 850 3444 20946 25228 25228 7 1 EAKEPLWIRPDAPSR Unmodified 1763.9319 0.93186744 598 P35520;P0DN79;P35520-2 CBS Cystathionine beta-synthase yes no 0 0 0 2 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 41.974 42.196 4 9.0805E-10 12244 20211116_3435_TMUAki_TMT10x_P_F7 135.69 122.55 8276700 13609000 24005 14448000 22177000 18183000 13507000 7584300 7891300 7906700 11520000 7706300 12702000 854540 14736000 21045000 18055000 13980000 8255700 8402500 7708800 11001000 5 5 3 5 5 5 5 5 5 5 5 7221800 11485000 8739 12254000 21311000 17376000 12776000 6760900 7050900 6931100 9846100 6723900 10719000 755500 12523000 20217000 17147000 13228000 7414800 7522800 6762200 9411700 4 4 2 4 4 4 4 4 4 4 4 1054900 2124100 15265 2193400 866150 807400 731090 823380 840410 975680 1673900 982360 1982300 99044 2212000 828040 908380 752020 840910 879760 946620 1588900 1 1 1 1 1 1 1 1 1 1 1 654660000 553080000 101580000 3686 598 3445 20947;20948;20949 25229;25230;25231;25232;25233 25231 5 EALAEAALESPRPALVR Unmodified 1791.9843 0.98429694 129 O14745;O14745-2 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 54.667 54.846 3 6.028E-15 16334 20211116_3431_TMUAki_TMT10x_P_F4 126.16 100.84 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3687 129 3446 20950;20951 25234;25235 25234 2 EALAQTVLAEVPTQLVSYFR Unmodified 2234.1947 0.19468365 2608 Q99829 CPNE1 Copine-1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.55 2.61 2 4 2 1 2 6 5 82.044 82.036 2;3 1.2423E-103 27227 20211116_3440_TMUAki_TMT10x_S_F2 320.35 300.06 9323200 14858000 59752 15290000 10568000 13487000 10877000 8337100 7883000 9271900 11021000 8680200 13866000 710540 15541000 10136000 13735000 10924000 8764400 8262000 9016900 10535000 10 10 3 10 10 10 10 10 10 10 10 5283300 7972800 9984.4 8560100 5166100 9073300 5782600 4315000 4315300 5068500 6034800 4918600 7441700 348490 8698900 4963300 9104700 5787900 4649900 4515300 4919100 5768300 6 6 1 6 6 6 6 6 6 6 6 4039900 6885200 49768 6730300 5401800 4413300 5094400 4022100 3567700 4203400 4986600 3761600 6424000 362050 6842300 5172300 4630100 5136300 4114600 3746700 4097800 4766500 4 4 2 4 4 4 4 4 4 4 4 5295700000 4592000000 703700000 3688 2608 3447 20952;20953;20954;20955;20956;20957;20958;20959;20960;20961;20962 25236;25237;25238;25239;25240;25241;25242;25243;25244;25245;25246;25247 25244 12 EALDLGITGPEGIEISRPEELEAEATHR Unmodified 3031.5098 0.50982279 2617 Q9BPU6 DPYSL5 Dihydropyrimidinase-related protein 5 yes yes 0 0 0 1 By MS/MS By MS/MS 1.86 0.833 3 2 2 3 4 67.936 67.698 3;4 1.0235E-142 23251 20211116_3439_TMUAki_TMT10x_S_F1 348.21 329.16 36534000 63097000 1254100 63672000 43517000 61573000 43535000 40540000 39703000 43078000 49597000 34026000 58878000 3791900 64884000 41799000 62383000 44040000 42356000 40910000 41968000 47538000 14 14 9 14 14 14 14 14 14 14 14 21562000 36152000 922260 37109000 25264000 44910000 26213000 24097000 22999000 25998000 29563000 20083000 33737000 2339000 37906000 24302000 44802000 26440000 25607000 23771000 25313000 28315000 6 6 4 6 6 6 6 6 6 6 6 14973000 26945000 331850 26564000 18253000 16663000 17322000 16443000 16704000 17080000 20034000 13943000 25141000 1452800 26978000 17497000 17581000 17600000 16749000 17139000 16655000 19223000 8 8 5 8 8 8 8 8 8 8 8 27466000000 15856000000 11611000000 3689 2617 3448 20963;20964;20965;20966;20967;20968;20969 25248;25249;25250;25251;25252;25253;25254;25255;25256;25257;25258;25259;25260;25261 25256 14 EALEHLCTYEK Unmodified 1391.6391 0.63911582 2714 Q9BXJ9;Q9BXJ9-4 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes no 0 0 0 0 By MS/MS 5 1 1 1 2 44.275 44.357 3 0.040088 12139 20211116_3431_TMUAki_TMT10x_P_F4 51.013 22.207 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3690 2714 3449 20970;20971 25262;25263 25262 2 EALELTDTGLLSGSEER Unmodified 1818.8847 0.88470206 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS 1.33 0.471 2 1 3 65.995 65.995 2;3 9.2387E-58 20547 20211116_3428_TMUAki_TMT10x_P_F1 249.33 217.73 7773900 12503000 95341 12220000 8034000 14593000 8860700 6356200 5559800 5925800 8345700 7239000 11665000 737010 12521000 7729900 14535000 8842400 6865400 5899500 5805200 7964500 2 2 2 2 2 2 2 2 2 2 2 7773900 12503000 95341 12220000 8034000 14593000 8860700 6356200 5559800 5925800 8345700 7239000 11665000 737010 12521000 7729900 14535000 8842400 6865400 5899500 5805200 7964500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 531570000 531570000 0 3691 1695 3450 20972;20973;20974 25264;25265;25266;25267 25266 4 EALENCITLQDFNR Unmodified 1721.8043 0.80428367 2619 Q9BPX3 NCAPG Condensin complex subunit 3 yes yes 0 0 0 0 By MS/MS 4 0 1 1 62.382 62.245 3 0.0028231 19920 20211116_3442_TMUAki_TMT10x_S_F4 62.077 49.717 2106100 3883300 0 3508500 2493700 2019500 2302500 2212100 1942600 2296200 2724800 1960700 3622100 145310 3583500 2384000 2153500 2334400 2241900 2019700 2239200 2604300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2106100 3883300 0 3508500 2493700 2019500 2302500 2212100 1942600 2296200 2724800 1960700 3622100 145310 3583500 2384000 2153500 2334400 2241900 2019700 2239200 2604300 1 1 0 1 1 1 1 1 1 1 1 366710000 0 366710000 3692 2619 3451 20975 25268 25268 1 EALFNEFVAAAR Unmodified 1336.6776 0.67755023 132 O14776;O14776-2 TCERG1 Transcription elongation regulator 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 74.528 74.584 2 4.1561E-06 25922 20211116_3446_TMUAki_TMT10x_S_F7 117.42 88.506 22036000 36586000 139850 31712000 26584000 36900000 29002000 27002000 26244000 27896000 29799000 20517000 34120000 1794000 32774000 25545000 37049000 29206000 27980000 26945000 27208000 28636000 5 5 4 5 5 5 5 5 5 5 5 12552000 19656000 81342 17390000 13330000 23872000 14693000 14897000 14788000 15665000 16431000 11688000 18332000 1127400 17998000 12821000 23717000 14836000 15622000 15098000 15268000 15799000 3 3 3 3 3 3 3 3 3 3 3 9484100 16930000 58508 14322000 13254000 13028000 14308000 12105000 11456000 12231000 13369000 8829200 15788000 666670 14776000 12724000 13331000 14370000 12358000 11847000 11940000 12837000 2 2 1 2 2 2 2 2 2 2 2 2642700000 1617200000 1025500000 3693 132 3452 20976;20977;20978;20979;20980 25269;25270;25271;25272;25273 25273 5 EALGGQALYPHVLVK Unmodified 1593.8879 0.88787736 2675 Q9BUJ2;Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2-3 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 55.864 56.193 3 4.9029E-06 16636 20211116_3436_TMUAki_TMT10x_P_F8 101.36 77.752 17596000 33439000 46977 30247000 26013000 32070000 21025000 38077000 40862000 30722000 26370000 16383000 31191000 1545100 31109000 24815000 32694000 22202000 38191000 40188000 30307000 25887000 3 3 1 3 3 3 3 3 3 3 3 10772000 18052000 46977 17595000 18847000 25637000 13891000 16850000 17362000 14913000 14171000 10030000 16842000 975710 18102000 17945000 25423000 14457000 17517000 17398000 14645000 13769000 2 2 1 2 2 2 2 2 2 2 2 6824000 15388000 0 12652000 7165700 6433900 7134200 21227000 23500000 15808000 12199000 6353800 14348000 569430 13007000 6869900 7270400 7744800 20673000 22790000 15662000 12118000 1 1 0 1 1 1 1 1 1 1 1 2469300000 1530700000 938640000 3694 2675 3453 20981;20982 25274;25275;25276 25275 3 EALGIPAAASFK Unmodified 1173.6394 0.63937381 892 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 By MS/MS 7 0 1 1 61.01 61.723 2 3.5411E-07 20073 20211116_3435_TMUAki_TMT10x_P_F7 131.82 92.11 3479500 6070400 50337 5765000 5786000 9792300 5182200 5359700 5476600 5279300 4909000 3240200 5663200 367690 5963100 5535700 9627800 5297200 5670700 5538500 5159300 4753100 1 1 1 1 1 1 1 1 1 1 1 3479500 6070400 50337 5765000 5786000 9792300 5182200 5359700 5476600 5279300 4909000 3240200 5663200 367690 5963100 5535700 9627800 5297200 5670700 5538500 5159300 4753100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 349210000 349210000 0 3695 892 3454 20983 25277 25277 1 EALICPTCNVTIHNR Unmodified 1796.8662 0.86617242 2382 Q92974;Q92974-2;Q92974-3 ARHGEF2 Rho guanine nucleotide exchange factor 2 yes no 0 0 0 0 By MS/MS 6 0 1 1 40.242 40.259 3 0.0016048 9607 20211116_3434_TMUAki_TMT10x_P_F6 62.69 49.923 3609900 5284600 19754 7707200 11519000 8640800 4568900 4168000 5152100 3223000 4694800 3361400 4940200 428470 7705500 10871000 8644600 5015800 4435200 5199700 3186700 4543100 2 2 2 2 2 2 2 2 2 2 2 3609900 5284600 19754 7707200 11519000 8640800 4568900 4168000 5152100 3223000 4694800 3361400 4940200 428470 7705500 10871000 8644600 5015800 4435200 5199700 3186700 4543100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 75371000 75371000 0 3696 2382 3455 20984 25278;25279 25279 2 EALLELLR Unmodified 955.57023 0.57023162 1669 Q13895 BYSL Bystin yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 73.966 73.934 2 0.018078 23254 20211116_3434_TMUAki_TMT10x_P_F6 69.825 30.526 5441600 9709700 58453 9476700 5896300 5912700 6043100 4722800 4653300 5359000 6611900 5067100 9059300 509890 9630900 5660700 6216500 6079100 4881000 4864300 5207700 6317700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5441600 9709700 58453 9476700 5896300 5912700 6043100 4722800 4653300 5359000 6611900 5067100 9059300 509890 9630900 5660700 6216500 6079100 4881000 4864300 5207700 6317700 2 2 1 2 2 2 2 2 2 2 2 572430000 0 572430000 3697 1669 3456 20985;20986;20987 25280;25281;25282 25280 3 EALLGVQEDVDEYVK Unmodified 1705.841 0.84104633 1701 Q14257;Q14257-2 RCN2 Reticulocalbin-2 yes no 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 4 2 2 5 3 73.955 73.837 2;3 1.3625E-41 25716 20211116_3439_TMUAki_TMT10x_S_F1 233.37 209.62 28819000 47298000 184260 42419000 27539000 43964000 32931000 24249000 26344000 29102000 33326000 26833000 44116000 2355900 43642000 26540000 44249000 32918000 25795000 27336000 28223000 31932000 8 8 5 8 8 8 8 8 8 8 8 19301000 31446000 80533 27151000 17183000 32976000 21437000 15320000 17038000 18505000 21140000 17970000 29326000 1458400 28089000 16575000 32838000 21386000 16563000 17671000 17942000 20266000 5 5 2 5 5 5 5 5 5 5 5 9517700 15852000 103730 15268000 10356000 10987000 11495000 8928500 9305800 10597000 12186000 8862700 14789000 897490 15553000 9964500 11411000 11532000 9231800 9665000 10281000 11666000 3 3 3 3 3 3 3 3 3 3 3 4576800000 3238300000 1338500000 3698 1701 3457 20988;20989;20990;20991;20992;20993;20994;20995 25283;25284;25285;25286;25287;25288;25289;25290;25291;25292 25291 10 EALNSCNKR Unmodified 1090.5189 0.5189411 729 P19338 NCL Nucleolin yes yes 0 0 0 1 By MS/MS 5 0 1 1 26.998 26.924 3 0.0020861 5446 20211116_3433_TMUAki_TMT10x_P_F5 80.896 41.022 257460 392440 0 287990 273630 421640 255220 177940 191180 193880 273480 239690 365800 18498 303170 261710 415820 257860 193690 200220 188700 261270 1 1 0 1 1 1 1 1 1 1 1 257460 392440 0 287990 273630 421640 255220 177940 191180 193880 273480 239690 365800 18498 303170 261710 415820 257860 193690 200220 188700 261270 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23109000 23109000 0 3699 729 3458 20996 25293 25293 1 EALPVSLPQIPCLSSFK Unmodified 1885.0019 0.0019208405 3120 Q9UHI6 DDX20 Probable ATP-dependent RNA helicase DDX20 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 3 1 2 79.467 79.446 3 0.0014403 27511 20211116_3429_TMUAki_TMT10x_P_F2 61.821 10.001 4249200 7210200 0 6966300 4257100 7128900 4337500 3558600 3027800 3774600 4538000 3956300 6727000 341450 7126400 4083200 7172200 4355000 3804800 3191200 3677600 4330900 1 1 0 1 1 1 1 1 1 1 1 4249200 7210200 0 6966300 4257100 7128900 4337500 3558600 3027800 3774600 4538000 3956300 6727000 341450 7126400 4083200 7172200 4355000 3804800 3191200 3677600 4330900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2953200000 1971100000 982040000 3700 3120 3459 20997;20998;20999 25294;25295 25294 2 EALQDVEDENQ Unmodified 1288.5419 0.54190419 1342 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 45.448 45.337 2 1.708E-06 12138 20211116_3428_TMUAki_TMT10x_P_F1 131.62 121.82 7106100 11612000 230140 17125000 17091000 11874000 8421300 11292000 12270000 8867800 12422000 6618200 10856000 756320 17003000 16183000 12407000 9114500 11438000 12319000 8760700 11979000 4 4 3 4 4 4 4 4 4 4 4 3427100 5680800 174960 7852200 14426000 9706100 5390200 5551900 6082500 4538400 5944800 3192300 5308900 601240 7884900 13616000 9680200 5961400 5824100 6152700 4474200 5739000 2 2 2 2 2 2 2 2 2 2 2 3679000 5931600 55179 9273300 2664600 2168000 3031100 5740200 6187300 4329400 6477500 3425900 5547300 155080 9118000 2567500 2727100 3153100 5613700 6166700 4286500 6239600 2 2 1 2 2 2 2 2 2 2 2 886580000 665650000 220930000 3701 1342 3460 21000;21001 25296;25297;25298;25299 25297 4 EALQNVHEEVALR Unmodified 1506.7791 0.77905519 2857 Q9HBK9;Q9HBK9-2 AS3MT Arsenite methyltransferase yes no 0 0 0 0 By matching By MS/MS 3 0 2 1 1 39.031 38.917 3 0.00093403 12533 20211116_3441_TMUAki_TMT10x_S_F3 74.772 46.139 781210 1324300 23285 1390100 745950 655960 796760 971840 1005900 804260 1096800 727550 1236000 85974 1402500 717940 720630 812010 967140 1017400 792390 1055200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 781210 1324300 23285 1390100 745950 655960 796760 971840 1005900 804260 1096800 727550 1236000 85974 1402500 717940 720630 812010 967140 1017400 792390 1055200 1 1 1 1 1 1 1 1 1 1 1 44991000 2372900 42618000 3702 2857 3461 21002;21003 25300 25300 1 EALQYFYFLRDEK Unmodified 1720.8461 0.84607213 2184 Q8N1F7;Q8N1F7-2 NUP93 Nuclear pore complex protein Nup93 yes no 0 0 0 1 By MS/MS 8 0 1 1 74.071 74.092 3 2.0178E-09 23984 20211116_3436_TMUAki_TMT10x_P_F8 134.14 114.93 9145200 15044000 168620 15116000 8849300 16083000 9842700 7732000 7594400 8384400 10656000 8516300 14038000 911200 15430000 8520300 16137000 9862300 8302400 7933000 8161700 10184000 2 2 2 2 2 2 2 2 2 2 2 9145200 15044000 168620 15116000 8849300 16083000 9842700 7732000 7594400 8384400 10656000 8516300 14038000 911200 15430000 8520300 16137000 9862300 8302400 7933000 8161700 10184000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 544490000 544490000 0 3703 2184 3462 21004 25301;25302 25301 2 EALTYDGALLGDR Unmodified 1392.6885 0.68850885 1765 Q15056-2;Q15056 EIF4H Eukaryotic translation initiation factor 4H yes no 0 0 0 0 By MS/MS By MS/MS 2.83 1.07 2 2 4 4 5 7 57.782 57.609 2;3 6.9199E-15 17392 20211116_3440_TMUAki_TMT10x_S_F2 175.97 136.35 68520000 117770000 304040 128490000 82032000 93118000 68453000 70271000 71619000 70943000 84663000 63797000 109930000 5633400 129800000 78299000 96531000 70243000 72620000 73184000 69259000 81267000 15 15 6 15 15 15 15 15 15 15 15 29347000 48654000 256150 53756000 43062000 59985000 35577000 28431000 28983000 29314000 33247000 27325000 45419000 2596400 54572000 41100000 60015000 36275000 30525000 29925000 28594000 31940000 6 6 3 6 6 6 6 6 6 6 6 39173000 69115000 47897 74736000 38970000 33134000 32876000 41841000 42636000 41628000 51416000 36472000 64513000 3037000 75224000 37199000 36516000 33968000 42095000 43259000 40665000 49327000 9 9 3 9 9 9 9 9 9 9 9 9472900000 5265800000 4207100000 3704 1765 3463 21005;21006;21007;21008;21009;21010;21011;21012;21013;21014;21015;21016 25303;25304;25305;25306;25307;25308;25309;25310;25311;25312;25313;25314;25315;25316;25317;25318 25313 16 EALVDTLTGILSPVQEVR Unmodified 1939.0626 0.062606842 2533 Q96P70 IPO9 Importin-9 yes yes 0 0 0 0 By MS/MS By MS/MS 5.8 0.748 2 2 1 3 2 80.288 80.298 3 2.2305E-17 26226 20211116_3445_TMUAki_TMT10x_S_F6 145.33 124.59 3182000 5997800 98333 5313700 3641300 4226500 3904500 2818400 3158400 3695500 4281300 2963500 5594100 361880 5452900 3504000 4341100 3923600 2962900 3285700 3573100 4095300 3 3 3 3 3 3 3 3 3 3 3 1124200 1997400 21221 1990100 886210 1867100 1050900 838640 1140500 1261400 1287500 1046900 1863700 109650 2028900 855160 1886500 1060200 917230 1161500 1214500 1237400 1 1 1 1 1 1 1 1 1 1 1 2057800 4000400 77112 3323600 2755100 2359500 2853600 1979700 2018000 2434100 2993900 1916600 3730300 252240 3424000 2648800 2454600 2863500 2045600 2124100 2358600 2857900 2 2 2 2 2 2 2 2 2 2 2 4278200000 2678600000 1599500000 3705 2533 3464 21017;21018;21019;21020;21021 25319;25320;25321;25322 25321 4 EAMDPIAELLSQLSGVR Oxidation (M) 1843.935 0.93496349 3049 Q9P0J7 KCMF1 E3 ubiquitin-protein ligase KCMF1 yes yes 0 0 1 0 By MS/MS 4 0 1 1 82.57 82.56 3 0.048891 28118 20211116_3442_TMUAki_TMT10x_S_F4 40.349 26.946 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3706 3049 3465 21022 25323 25323 3092 1 EAMEDGEIDGNKVTLDWAK Oxidation (M) 2135.9681 0.96811411 729 P19338 NCL Nucleolin yes yes 0 0 1 1 By MS/MS By matching 3.5 0.5 1 1 1 1 59.603 59.418 3 6.8708E-06 19935 20211116_3430_TMUAki_TMT10x_P_F3 84.493 74.297 3855800 5808700 94046 7168100 4635200 5489600 4192600 1559200 1489700 2186300 3772100 3590800 5425200 418240 7191500 4439000 5607600 4192200 1802400 1714800 2109400 3568100 1 1 1 1 1 1 1 1 1 1 1 3855800 5808700 94046 7168100 4635200 5489600 4192600 1559200 1489700 2186300 3772100 3590800 5425200 418240 7191500 4439000 5607600 4192200 1802400 1714800 2109400 3568100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 771950000 448500000 323450000 3707 729 3466 21023;21024 25324 25324 837 1 EAMEDGEIDGNKVTLDWAKPK Oxidation (M) 2361.1158 0.11584098 729 P19338 NCL Nucleolin yes yes 0 0 1 2 By MS/MS By MS/MS 5.55 1.23 3 2 4 1 1 6 5 55.588 55.74 4;5 6.3186E-19 16178 20211116_3445_TMUAki_TMT10x_S_F6 141.31 130.47 123870000 214330000 746770 168060000 189870000 203650000 161300000 126880000 110420000 145660000 171200000 115330000 199820000 11310000 175250000 181340000 203540000 163530000 133440000 116710000 141490000 163270000 16 16 9 16 16 16 16 16 16 16 16 51410000 86474000 434460 68456000 106520000 135110000 92008000 51714000 44540000 58655000 69060000 47869000 80622000 5131000 72105000 101780000 131650000 92617000 56996000 48259000 57000000 65861000 9 9 6 9 9 9 9 9 9 9 9 72456000 127860000 312310 99607000 83350000 68539000 69288000 75167000 65875000 87008000 102140000 67464000 119200000 6179400 103150000 79568000 71889000 70911000 76445000 68453000 84489000 97407000 7 7 3 7 7 7 7 7 7 7 7 18784000000 11067000000 7717300000 3708 729 3467 21025;21026;21027;21028;21029;21030;21031;21032;21033;21034;21035 25325;25326;25327;25328;25329;25330;25331;25332;25333;25334;25335;25336;25337;25338;25339;25340 25340 837 16 EAMEDGEIDGNKVTLDWAKPK Unmodified 2345.1209 0.12092636 729 P19338 NCL Nucleolin yes yes 0 0 0 2 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 59.599 59.865 4 1.2469E-10 17528 20211116_3444_TMUAki_TMT10x_S_F5 119.01 112.02 93316000 155390000 1487600 157680000 127410000 111490000 125000000 42976000 32335000 50796000 106840000 86892000 145000000 8924000 160010000 122150000 114890000 124050000 47386000 39594000 49288000 100760000 9 9 6 9 9 9 9 9 9 9 9 43537000 72638000 1435800 75328000 75835000 78832000 79347000 25421000 20415000 27977000 50572000 40548000 67789000 5399900 76710000 72889000 78892000 78477000 28618000 24417000 27218000 47851000 5 5 5 5 5 5 5 5 5 5 5 49779000 82747000 51784 82356000 51576000 32654000 45653000 17555000 11920000 22820000 56270000 46344000 77210000 3524000 83301000 49264000 35993000 45573000 18768000 15176000 22070000 52909000 4 4 1 4 4 4 4 4 4 4 4 11831000000 7101800000 4729000000 3709 729 3467 21036;21037;21038;21039;21040;21041 25341;25342;25343;25344;25345 25342 5 EAMEHPYFYPVVK Oxidation (M) 1624.7596 0.7595653 736 P19784 CSNK2A2 Casein kinase II subunit alpha' yes yes 0 0 1 0 By MS/MS By MS/MS 5.25 0.829 1 1 2 3 1 50.411 50.532 3 0.00034837 14857 20211116_3433_TMUAki_TMT10x_P_F5 78.324 63.633 3543700 6204900 27823 6789600 5635700 6896400 4298200 5893500 5920400 5581000 5454400 3299600 5792000 332080 6886800 5370700 6996400 4480000 6033400 5935400 5463600 5276100 2 2 1 2 2 2 2 2 2 2 2 1820000 3061800 0 3310400 3867200 5214700 2854500 3021900 3042000 2810700 2521300 1694500 2858000 162620 3388000 3681400 5145700 2954200 3176800 3068000 2753700 2448400 1 1 0 1 1 1 1 1 1 1 1 1723700 3143000 27823 3479200 1768500 1681600 1443700 2871600 2878400 2770400 2933100 1605100 2934000 169460 3498800 1689300 1850800 1525800 2856500 2867400 2709800 2827700 1 1 1 1 1 1 1 1 1 1 1 333450000 169620000 163830000 3710 736 3468 21042;21043;21044;21045 25346;25347;25348;25349 25347 844 4 EAMEHPYFYTVVK Oxidation (M) 1628.7545 0.75447993 1419 P68400;Q8NEV1;P68400-2 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 0 0 1 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 48.547 48.701 3 0.00012022 12883 20211116_3434_TMUAki_TMT10x_P_F6 88.552 76.939 14627000 24559000 95317 26783000 26566000 34010000 17952000 28410000 28055000 23470000 22603000 13620000 22924000 1445400 27274000 25261000 34076000 18973000 29020000 27905000 23125000 21973000 6 6 4 6 6 6 6 6 6 6 6 9976800 16940000 94403 18212000 21954000 29305000 14443000 18985000 19268000 16039000 15303000 9290000 15811000 1073500 18655000 20866000 28938000 15193000 19735000 19250000 15786000 14885000 4 4 3 4 4 4 4 4 4 4 4 4650300 7619200 913.45 8570700 4612700 4705100 3509100 9424700 8787000 7430500 7300200 4329700 7113100 371830 8618500 4394200 5137800 3780500 9284500 8655500 7339200 7088300 2 2 1 2 2 2 2 2 2 2 2 1530900000 855330000 675530000 3711 1419 3469 21046;21047;21048;21049 25350;25351;25352;25353;25354;25355 25353 1913 6 EAMNDPLLER Oxidation (M) 1202.5601 0.56013721 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 1 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 37.715 37.657 2 0.0015491 8952 20211116_3440_TMUAki_TMT10x_S_F2 95.311 65.935 2390300 4109000 14270 5375700 7988000 6423300 3502100 5197100 6267200 4049300 4597500 2225300 3838900 243320 5410300 7544400 6451400 3872500 5311600 6195500 4002100 4486800 5 5 1 5 5 5 5 5 5 5 5 1796300 3115500 14270 4036800 7481300 5975400 3027300 3893100 4714400 3062800 3473800 1672400 2910500 206600 4082100 7060000 5921000 3355900 4038500 4678200 3025500 3389400 3 3 1 3 3 3 3 3 3 3 3 593990 993500 0 1338900 506740 447830 474750 1304000 1552800 986560 1123700 552970 928330 36719 1328200 484350 530420 516610 1273100 1517300 976600 1097300 2 2 0 2 2 2 2 2 2 2 2 458960000 356480000 102480000 3712 196 3470 21050;21051;21052;21053 25356;25357;25358;25359;25360 25360 145 5 EAMNDPLLER Unmodified 1186.5652 0.56522259 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 46.693 46.522 2 0.0018869 14233 20211116_3429_TMUAki_TMT10x_P_F2 82.914 63.21 3029700 4264500 4851.1 5347700 6121000 5286100 3390700 2909500 3100700 2752300 3797200 2820800 3983300 281150 5378100 5799600 5335500 3573100 3073400 3191800 2694600 3641400 2 2 1 2 2 2 2 2 2 2 2 2277500 3043700 0 3875000 5440600 4777600 2884800 2051900 2354800 2021600 2806400 2120500 2843200 215280 3907900 5151300 4750200 3043400 2222900 2434900 1975600 2693200 1 1 0 1 1 1 1 1 1 1 1 752130 1220900 4851.1 1472700 680420 508510 505910 857640 745820 730760 990760 700350 1140100 65874 1470200 648330 585350 529720 850570 756940 718930 948170 1 1 1 1 1 1 1 1 1 1 1 204740000 109770000 94968000 3713 196 3470 21054;21055 25361 25361 1 EAMVQAEEAAAEITR Oxidation (M) 1633.7618 0.76175015 103 O00567 NOP56 Nucleolar protein 56 yes yes 0 0 1 0 By MS/MS By MS/MS 1.2 0.4 8 2 5 5 49.906 49.774 2;3 5.4613E-19 15773 20211116_3439_TMUAki_TMT10x_S_F1 169.58 146.44 7492300 12629000 108070 13048000 9140600 10540000 7587100 12038000 12186000 10640000 11811000 6976700 11785000 724000 13244000 8730500 10925000 7919500 12122000 12183000 10449000 11405000 7 7 4 7 7 7 7 7 7 7 7 2152100 3467600 53505 3816700 4420400 5969600 3213900 3504500 3451600 3033000 3365500 2004100 3236900 254500 3901200 4211100 5893200 3330500 3673400 3498000 2981600 3249200 2 2 1 2 2 2 2 2 2 2 2 5340200 9161100 54567 9230900 4720100 4570100 4373100 8533300 8734300 7607100 8445100 4972600 8548500 469490 9342400 4519500 5032300 4589000 8448300 8684500 7467600 8155600 5 5 3 5 5 5 5 5 5 5 5 2616900000 1943800000 673090000 3714 103 3471 21056;21057;21058;21059;21060;21061;21062;21063;21064;21065 25362;25363;25364;25365;25366;25367;25368;25369;25370 25366 77 9 EAMVQAEEAAAEITR Unmodified 1617.7668 0.76683553 103 O00567 NOP56 Nucleolar protein 56 yes yes 0 0 0 0 By MS/MS 1 0 2 2 64.75 64.75 2;3 5.6721E-20 20079 20211116_3428_TMUAki_TMT10x_P_F1 154.65 132.66 3002900 5335700 64879 5318500 3690800 6404700 4507400 3398000 3143700 3650100 4252100 2796500 4978700 319060 5443200 3563300 6390200 4487200 3614200 3297200 3554500 4067500 2 2 2 2 2 2 2 2 2 2 2 3002900 5335700 64879 5318500 3690800 6404700 4507400 3398000 3143700 3650100 4252100 2796500 4978700 319060 5443200 3563300 6390200 4487200 3614200 3297200 3554500 4067500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 474820000 474820000 0 3715 103 3471 21066;21067 25371;25372;25373 25373 3 EANALAAGHPAQAVAINAR Unmodified 1843.9653 0.96529283 154 O15020;O15020-2 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes no 0 0 0 0 By matching By MS/MS 4.5 0.5 1 1 1 1 36.571 36.666 3 8.3339E-24 8132 20211116_3444_TMUAki_TMT10x_S_F5 162.76 145.98 359690 661620 5852.9 744370 313870 277630 327230 496300 573830 439540 558550 334950 617670 34634 746560 301650 316540 338860 491870 572440 431620 539290 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 359690 661620 5852.9 744370 313870 277630 327230 496300 573830 439540 558550 334950 617670 34634 746560 301650 316540 338860 491870 572440 431620 539290 1 1 1 1 1 1 1 1 1 1 1 95925000 38967000 56958000 3716 154 3472 21068;21069 25374 25374 1 EANHDGDFGITLAELR Unmodified 1756.838 0.83802663 737 P20020;P20020-5;P20020-2;P20020-6;P20020-4;P20020-1 ATP2B1 Plasma membrane calcium-transporting ATPase 1 yes no 0 0 0 0 By MS/MS By MS/MS 2 1 2 2 2 2 57.628 57.394 3 1.2801E-21 20109 20211116_3441_TMUAki_TMT10x_S_F3 173.28 155.47 7849300 13444000 174360 12390000 9855700 12114000 8927900 10950000 10213000 10225000 11233000 7309800 12541000 839530 12710000 9437300 12331000 9144200 11170000 10370000 10016000 10804000 5 5 4 5 5 5 5 5 5 5 5 3188700 5311400 40413 4891900 4274300 7425700 4434200 4176300 4061700 4047300 4337600 2969300 4954600 315410 5058100 4104700 7335500 4477900 4406300 4158100 3958100 4175800 2 2 1 2 2 2 2 2 2 2 2 4660600 8132800 133950 7498300 5581500 4687900 4493700 6773300 6151600 6178100 6895100 4340500 7586400 524130 7652300 5332600 4996000 4666300 6763500 6212000 6058400 6628400 3 3 3 3 3 3 3 3 3 3 3 1107200000 792150000 315000000 3717 737 3473 21070;21071;21072;21073 25375;25376;25377;25378;25379 25378 5 EANLAASFGK Unmodified 1006.5084 0.50835964 582 P09622;P09622-3;P09622-2 DLD Dihydrolipoyl dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS 6 0 1 1 50.988 51.13 2 8.1474E-05 14264 20211116_3445_TMUAki_TMT10x_S_F6 126.71 61.842 2874200 4903700 7384.5 5404500 3008200 2442000 2863400 3361500 3224400 2895200 3622500 2676200 4577500 247050 5433800 2881200 2691100 2923200 3357400 3278600 2846800 3482100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2874200 4903700 7384.5 5404500 3008200 2442000 2863400 3361500 3224400 2895200 3622500 2676200 4577500 247050 5433800 2881200 2691100 2923200 3357400 3278600 2846800 3482100 1 1 1 1 1 1 1 1 1 1 1 103520000 0 103520000 3718 582 3474 21074 25380 25380 1 EANLLNAVIVQR Unmodified 1338.7619 0.76194857 3203 Q9UNZ2;Q9UNZ2-5;Q9UNZ2-4;Q9UNZ2-6 NSFL1C NSFL1 cofactor p47 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 62.374 62.77 2 1.0904E-14 19096 20211116_3445_TMUAki_TMT10x_S_F6 152.7 131.25 21312000 35307000 154630 37129000 26532000 29462000 24914000 21030000 18344000 21706000 26499000 19844000 32952000 1984100 37635000 25409000 30298000 25152000 21828000 19239000 21171000 25310000 4 4 4 4 4 4 4 4 4 4 4 8716900 14571000 86448 14753000 11802000 18333000 11551000 9045200 8247800 9006700 10664000 8116900 13597000 846460 15091000 11315000 18247000 11627000 9664100 8621000 8798000 10213000 2 2 2 2 2 2 2 2 2 2 2 12595000 20736000 68180 22376000 14730000 11129000 13363000 11985000 10096000 12699000 15835000 11728000 19355000 1137600 22543000 14094000 12051000 13525000 12164000 10618000 12373000 15098000 2 2 2 2 2 2 2 2 2 2 2 2010300000 1203200000 807120000 3719 3203 3475 21075;21076;21077;21078 25381;25382;25383;25384;25385 25383 5 EANNFLWPFK Unmodified 1264.6241 0.6240581 716 P18124 RPL7 60S ribosomal protein L7 yes yes 0 0 0 0 By MS/MS By MS/MS 4.62 3.16 2 2 1 3 5 3 78.202 78.188 2;3 0.0005907 25537 20211116_3428_TMUAki_TMT10x_P_F1 103.19 71.771 72059000 120150000 10453 124220000 71351000 77362000 82839000 33116000 30883000 41420000 71151000 67089000 112120000 5338400 125740000 68663000 80707000 81818000 36152000 35121000 40111000 67390000 5 5 1 5 5 5 5 5 5 5 5 32113000 50900000 0 53206000 32243000 41650000 35903000 13987000 12427000 16909000 29711000 29898000 47504000 2341600 53943000 30987000 42521000 35500000 15705000 14283000 16394000 28126000 2 2 0 2 2 2 2 2 2 2 2 39946000 69245000 10453 71014000 39108000 35712000 46936000 19129000 18456000 24511000 41440000 37191000 64620000 2996800 71793000 37676000 38186000 46318000 20447000 20837000 23717000 39264000 3 3 1 3 3 3 3 3 3 3 3 6943700000 3641700000 3301900000 3720 716 3476 21079;21080;21081;21082;21083;21084;21085;21086 25386;25387;25388;25389;25390;25391;25392 25386 7 EANSIIITPGYGLCAAK Unmodified 1776.908 0.90802046 1630 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 6.75 0.433 1 3 2 2 64.956 65.332 2;3 6.3091E-29 22121 20211116_3446_TMUAki_TMT10x_S_F7 184.31 161.4 11300000 19053000 177190 17385000 12506000 16508000 12271000 13421000 12907000 13579000 13808000 10522000 17772000 1098300 17841000 11995000 16802000 12479000 13806000 13135000 13255000 13292000 3 3 2 3 3 3 3 3 3 3 3 4692200 7348700 145720 6970200 5082000 9774500 5556800 5364600 5447900 5668100 5561200 4370000 6855700 530280 7179400 4893600 9685500 5608300 5686000 5551100 5523200 5361200 1 1 1 1 1 1 1 1 1 1 1 6607500 11704000 31474 10415000 7424400 6734000 6714500 8056600 7459500 7910600 8246500 6152300 10917000 568030 10661000 7101600 7116900 6871000 8120300 7584100 7731900 7930700 2 2 1 2 2 2 2 2 2 2 2 2650500000 1370500000 1279900000 3721 1630 3477 21087;21088;21089;21090 25393;25394;25395 25395 3 EAPAEGEAAEPGSPTAAEGEAASAASSTSSPK Unmodified 2914.2952 0.29519815 857 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate yes yes 0 0 0 0 By MS/MS By MS/MS 2.12 0.9 5 6 5 1 8 9 46.291 46.154 3;4;5 1.3866E-57 14304 20211116_3430_TMUAki_TMT10x_P_F3 209.05 195.8 27862000 46425000 273280 79008000 58553000 61193000 35759000 39636000 55701000 32125000 47437000 25944000 43441000 2013500 78033000 55580000 62953000 38081000 41162000 55500000 31685000 46016000 27 27 14 27 27 27 27 27 27 27 27 13553000 22207000 144610 38627000 53502000 55406000 31513000 18639000 27796000 15372000 22748000 12619000 20783000 1138200 38497000 50752000 54583000 33000000 20709000 28262000 15148000 22100000 12 12 5 12 12 12 12 12 12 12 12 14310000 24218000 128660 40381000 5051000 5786500 4245800 20996000 27904000 16753000 24689000 13324000 22658000 875370 39537000 4828000 8370600 5081200 20453000 27239000 16537000 23916000 15 15 9 15 15 15 15 15 15 15 15 27519000000 20052000000 7467600000 3722 857 3478 21091;21092;21093;21094;21095;21096;21097;21098;21099;21100;21101;21102;21103;21104;21105;21106;21107 25396;25397;25398;25399;25400;25401;25402;25403;25404;25405;25406;25407;25408;25409;25410;25411;25412;25413;25414;25415;25416;25417;25418;25419;25420;25421;25422 25407 27 EAPAPPKAEAK Unmodified 1107.5924 0.59242362 1364 P62750 RPL23A 60S ribosomal protein L23a yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 31.942 31.927 3 1.2297E-05 7130 20211116_3431_TMUAki_TMT10x_P_F4 109 88.793 2923100 4964300 49104 3579900 3469900 5062700 2820100 2206600 2672300 2428800 3320700 2722100 4627100 295770 3772000 3313800 5001900 2890000 2394300 2748100 2363000 3183300 2 2 2 2 2 2 2 2 2 2 2 2923100 4964300 49104 3579900 3469900 5062700 2820100 2206600 2672300 2428800 3320700 2722100 4627100 295770 3772000 3313800 5001900 2890000 2394300 2748100 2363000 3183300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 194290000 194290000 0 3723 1364 3479 21108;21109 25423;25424 25423 2 EAPASVVPFVR Unmodified 1170.6397 0.63970816 1906 Q53GS9;Q53GS9-3 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 5.6 0.49 2 3 2 3 53.532 53.679 2 3.8031E-08 14923 20211116_3434_TMUAki_TMT10x_P_F6 150.27 105.87 11077000 18603000 88857 20578000 17374000 20378000 13392000 15674000 15218000 15485000 15825000 10314000 17366000 1066200 20850000 16563000 20666000 13849000 16168000 15424000 15131000 15247000 3 3 2 3 3 3 3 3 3 3 3 6987900 10953000 11367 12566000 13189000 16286000 9029600 9557000 9230300 9098500 9486600 6506300 10227000 653620 12761000 12541000 16211000 9382900 10043000 9390600 8905000 9143500 2 2 1 2 2 2 2 2 2 2 2 4088900 7649200 77490 8012400 4185000 4091700 4362600 6117100 5988100 6386100 6338300 3807700 7138900 412560 8089700 4021900 4455700 4466200 6125300 6033100 6225900 6103500 1 1 1 1 1 1 1 1 1 1 1 1383000000 780790000 602230000 3724 1906 3480 21110;21111;21112;21113;21114 25425;25426;25427;25428 25426 4 EAPATQASSTTQLTDTQVLAAENK Unmodified 2474.2136 0.21364077 3191 Q9UNF1;Q9UNF1-2 MAGED2 Melanoma-associated antigen D2 yes no 0 0 0 0 By MS/MS 3.75 0.433 1 3 4 53.858 53.852 3 2.5107E-48 17644 20211116_3430_TMUAki_TMT10x_P_F3 208.39 192.27 703830 1120600 4610 1448000 1532500 2053500 1116500 1198300 1265100 991900 1027500 655370 1046800 74254 1463200 1459200 2035400 1158900 1255300 1272100 977240 998520 1 1 1 1 1 1 1 1 1 1 1 703830 1120600 4610 1448000 1532500 2053500 1116500 1198300 1265100 991900 1027500 655370 1046800 74254 1463200 1459200 2035400 1158900 1255300 1272100 977240 998520 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 447680000 447680000 0 3725 3191 3481 21115;21116;21117;21118 25429;25430;25431 25429 3 EAPCVLIYIPDGHTK Unmodified 1711.8603 0.86034198 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 0 By MS/MS By MS/MS 6.2 0.748 1 2 2 2 3 60.632 60.847 3 1.4601E-07 18267 20211116_3445_TMUAki_TMT10x_S_F6 119.77 100.45 26035000 44830000 501560 44635000 36990000 50829000 33884000 40874000 38091000 37336000 36818000 24245000 41830000 2779300 45641000 35420000 51176000 34663000 41955000 38522000 36610000 35556000 7 7 7 7 7 7 7 7 7 7 7 14468000 24154000 302790 23825000 23962000 37742000 21756000 23119000 21928000 20660000 19919000 13474000 22537000 1614700 24537000 22939000 37262000 22189000 24170000 22229000 20279000 19278000 4 4 4 4 4 4 4 4 4 4 4 11566000 20676000 198770 20810000 13028000 13087000 12128000 17755000 16164000 16676000 16898000 10771000 19293000 1164700 21104000 12482000 13914000 12474000 17784000 16293000 16331000 16279000 3 3 3 3 3 3 3 3 3 3 3 4667700000 2714600000 1953100000 3726 542 3482 21119;21120;21121;21122;21123 25432;25433;25434;25435;25436;25437;25438;25439 25438 8 EAPEELLAYEGVR Unmodified 1474.7304 0.73037367 1563 Q12788 TBL3 Transducin beta-like protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 1.25 0.433 3 1 2 2 61.539 61.539 2;3 5.103E-18 19020 20211116_3440_TMUAki_TMT10x_S_F2 150.86 131.08 6823400 11187000 39371 11431000 9334700 15294000 9545100 8648800 8953700 8315600 8766000 6353300 10440000 609380 11702000 8956400 15193000 9652700 9118900 9128000 8135200 8462000 2 2 1 2 2 2 2 2 2 2 2 6823400 11187000 39371 11431000 9334700 15294000 9545100 8648800 8953700 8315600 8766000 6353300 10440000 609380 11702000 8956400 15193000 9652700 9118900 9128000 8135200 8462000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 431340000 431340000 0 3727 1563 3483 21124;21125;21126;21127 25440;25441;25442;25443;25444 25444 5 EAPETDTSPSLWDVEFAK Unmodified 2020.9266 0.92656687 2354 Q92665 MRPS31 28S ribosomal protein S31, mitochondrial yes yes 0 0 0 0 By MS/MS 2 0 1 1 75.772 75.718 3 0.10019 24733 20211116_3440_TMUAki_TMT10x_S_F2 28.355 10.655 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3728 2354 3484 21128 25445 25445 1 EAPFSEFFLDPGTSVLDTCRK Unmodified 2415.1417 0.1416618 3257 Q9Y2Z4 YARS2 Tyrosine--tRNA ligase, mitochondrial yes yes 0 0 0 1 By MS/MS 7 0 1 1 78.314 78.363 3 0.0093655 27591 20211116_3446_TMUAki_TMT10x_S_F7 48.196 30.914 3911000 7543900 262640 5899200 4625900 5805600 5635800 3513700 3613900 3956100 4910700 3643500 7033200 579040 6133000 4476800 5868600 5601300 3701400 3811100 3845500 4697000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3911000 7543900 262640 5899200 4625900 5805600 5635800 3513700 3613900 3956100 4910700 3643500 7033200 579040 6133000 4476800 5868600 5601300 3701400 3811100 3845500 4697000 1 1 1 1 1 1 1 1 1 1 1 676590000 0 676590000 3729 3257 3485 21129 25446 25446 1 EAPNPIHLTVDTSLQNGR Unmodified 1960.9967 0.99665254 81 O00303 EIF3F Eukaryotic translation initiation factor 3 subunit F yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 49.014 49.193 3 5.5258E-12 13194 20211116_3444_TMUAki_TMT10x_S_F5 123.63 110.43 1948700 3249400 101390 3814100 1807100 1361900 1421700 2449200 2273000 2006100 2543400 1815200 3034200 254070 3814400 1729200 1563100 1488600 2422000 2284700 1977500 2445200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1948700 3249400 101390 3814100 1807100 1361900 1421700 2449200 2273000 2006100 2543400 1815200 3034200 254070 3814400 1729200 1563100 1488600 2422000 2284700 1977500 2445200 1 1 1 1 1 1 1 1 1 1 1 374930000 0 374930000 3730 81 3486 21130;21131;21132 25447;25448;25449 25449 3 EAPPMEKPEVVK Oxidation (M) 1368.6959 0.69590241 1370 P62841 RPS15 40S ribosomal protein S15 yes yes 0 0 1 1 By MS/MS By MS/MS 4.8 0.4 1 4 3 2 36.733 36.794 3;4 0.00022177 8189 20211116_3444_TMUAki_TMT10x_S_F5 88.552 75.039 4459400 7134100 34488 7060600 9242100 8365600 5528800 4800700 5764700 4485800 6039900 4152400 6656600 461940 7227600 8770400 8361700 5809600 5051500 5864000 4394000 5817900 6 6 4 6 6 6 6 6 6 6 6 3579300 5626500 19052 5610000 8316400 7542600 4540100 3842400 4603100 3601300 4834200 3332800 5250100 373950 5753200 7880300 7481500 4804600 4086200 4688300 3527200 4656200 4 4 2 4 4 4 4 4 4 4 4 880130 1507600 15435 1450600 925650 823070 988770 958350 1161600 884420 1205700 819600 1406500 87991 1474500 890080 880240 1005000 965350 1175700 866810 1161700 2 2 2 2 2 2 2 2 2 2 2 466870000 353850000 113020000 3731 1370 3487 21133;21134;21135;21136;21137 25450;25451;25452;25453;25454 25454 1842 5 EAPPMEKPEVVK Unmodified 1352.701 0.70098779 1370 P62841 RPS15 40S ribosomal protein S15 yes yes 0 0 0 1 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 42.992 43.07 3 8.1266E-06 11892 20211116_3433_TMUAki_TMT10x_P_F5 103.85 83.549 5354200 8183600 0 10233000 16526000 9418600 7148900 3884800 3820300 3607700 6648100 4984800 7643800 539280 10282000 15606000 9520900 7638700 4220700 4132500 3534900 6325600 2 2 0 2 2 2 2 2 2 2 2 5354200 8183600 0 10233000 16526000 9418600 7148900 3884800 3820300 3607700 6648100 4984800 7643800 539280 10282000 15606000 9520900 7638700 4220700 4132500 3534900 6325600 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 600170000 600170000 0 3732 1370 3487 21138;21139;21140 25455;25456;25457 25455 3 EAPTAYSLLIMHR Oxidation (M) 1516.7708 0.77079869 1524 Q06203 PPAT Amidophosphoribosyltransferase yes yes 0 0 1 0 By MS/MS By MS/MS 7 0 2 1 1 51.165 51.657 3 1.1346E-05 15928 20211116_3435_TMUAki_TMT10x_P_F7 87.719 74.583 1758200 3542600 34786 3808100 2012500 2125600 1903100 2803200 3121200 2860800 3275900 1637300 3306600 181740 3841000 1929000 2284400 1973900 2817600 3127500 2791700 3155300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1758200 3542600 34786 3808100 2012500 2125600 1903100 2803200 3121200 2860800 3275900 1637300 3306600 181740 3841000 1929000 2284400 1973900 2817600 3127500 2791700 3155300 1 1 1 1 1 1 1 1 1 1 1 350250000 0 350250000 3733 1524 3488 21141;21142 25458;25459 25458 2061 2 EAPVDVLTQIGR Unmodified 1296.7038 0.70376498 2691 Q9BVC6 TMEM109 Transmembrane protein 109 yes yes 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 63.247 63.183 2 2.7128E-19 18922 20211116_3444_TMUAki_TMT10x_S_F5 224.09 189.92 13296000 24114000 108650 22623000 19103000 23810000 15804000 20885000 19809000 19482000 19898000 12380000 22495000 1283600 23203000 18240000 24117000 16327000 21340000 19980000 19085000 19192000 4 4 3 4 4 4 4 4 4 4 4 6297300 11676000 81333 11061000 10464000 15819000 8984500 10029000 9225400 9019500 9329200 5864000 10893000 656250 11398000 10001000 15692000 9198200 10459000 9378400 8850500 8996300 2 2 2 2 2 2 2 2 2 2 2 6998300 12438000 27318 11563000 8638500 7991200 6819300 10856000 10583000 10462000 10569000 6516300 11602000 627350 11804000 8238800 8425600 7128800 10881000 10601000 10234000 10196000 2 2 1 2 2 2 2 2 2 2 2 3150700000 1682000000 1468700000 3734 2691 3489 21143;21144;21145;21146;21147 25460;25461;25462;25463;25464 25464 5 EAQDDLVK Unmodified 916.45018 0.45017606 682 P15311 EZR Ezrin yes yes 0 0 0 0 By MS/MS 2 0 1 1 35.524 35.623 2 0.0028649 8405 20211116_3440_TMUAki_TMT10x_S_F2 101.11 37.619 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3735 682 3490 21148 25465 25465 1 EAQDIKFTEEIPLK Unmodified 1659.872 0.87195252 86 O00425 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 0 0 0 1 By MS/MS 4 0 1 1 61.224 61.341 3 0.00045724 19024 20211116_3431_TMUAki_TMT10x_P_F4 69.331 52.252 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3736 86 3491 21149 25466 25466 1 EAQGNSSAGVEAAEQRPVEDGER Unmodified 2385.0793 0.079272552 1987 Q6NYC8;Q6NYC8-2 PPP1R18 Phostensin yes no 0 0 0 1 By MS/MS 1 0 1 1 30.856 30.856 3 1.8948E-68 6342 20211116_3428_TMUAki_TMT10x_P_F1 226.14 199.9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3737 1987 3492 21150 25467 25467 1 EAQLYAAQAHLK Unmodified 1341.7041 0.70409934 1091 P49321;P49321-3;P49321-4;P49321-2 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 0 By MS/MS By MS/MS 6.43 0.728 2 4 8 4 10 41.136 41.378 3;4 1.0696E-09 10234 20211116_3434_TMUAki_TMT10x_P_F6 156.8 108.86 13717000 22172000 51026 24121000 24897000 21519000 15209000 20157000 20209000 16338000 19891000 12772000 20696000 1092900 24431000 23629000 22052000 16089000 20448000 20329000 16114000 19198000 13 13 8 13 13 13 13 13 13 13 13 6064900 9658500 37939 10319000 16616000 14913000 8186800 9036200 8789000 7446300 8929700 5647200 9014900 668320 10549000 15722000 14777000 8763700 9436400 8919900 7338000 8609800 4 4 3 4 4 4 4 4 4 4 4 7652600 12513000 13087 13802000 8280600 6605700 7022300 11120000 11420000 8892000 10962000 7125200 11681000 424590 13882000 7907600 7274800 7325000 11012000 11409000 8776200 10589000 9 9 5 9 9 9 9 9 9 9 9 2539500000 1464000000 1075500000 3738 1091 3493 21151;21152;21153;21154;21155;21156;21157;21158;21159;21160;21161;21162;21163;21164 25468;25469;25470;25471;25472;25473;25474;25475;25476;25477;25478;25479;25480;25481;25482;25483;25484;25485;25486 25469 19 EAQMAAK Unmodified 747.35852 0.35852428 698 P16949;P16949-2 STMN1 Stathmin yes no 0 0 0 0 By MS/MS 3 0 1 1 31.13 30.877 2 0.014969 9399 20211116_3441_TMUAki_TMT10x_S_F3 87.323 51.127 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3739 698 3494 21165 25487 25487 1 EAQRDYLDFLDDEEDQGIYQSK Unmodified 2676.1827 0.18273457 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 1 By MS/MS By MS/MS 1.75 0.968 4 3 1 4 4 71.484 71.345 3;4 7.7047E-56 23022 20211116_3440_TMUAki_TMT10x_S_F2 231.89 223.9 96768000 160740000 687240 151210000 106300000 125330000 108830000 90361000 88081000 89759000 112300000 90095000 149950000 7556600 154540000 101950000 128490000 109620000 93620000 91375000 87688000 107580000 17 17 12 17 17 17 17 17 17 17 17 49081000 75624000 277720 72184000 38861000 74855000 51669000 42495000 43350000 43528000 51101000 45698000 70552000 3762200 73922000 37573000 75365000 51483000 44870000 44740000 42469000 49055000 7 7 6 7 7 7 7 7 7 7 7 47686000 85114000 409520 79025000 67439000 50473000 57164000 47866000 44732000 46231000 61197000 44397000 79398000 3794400 80622000 64377000 53121000 58136000 48750000 46635000 45219000 58525000 10 10 6 10 10 10 10 10 10 10 10 11077000000 7056200000 4021100000 3740 799 3495 21166;21167;21168;21169;21170;21171;21172;21173 25488;25489;25490;25491;25492;25493;25494;25495;25496;25497;25498;25499;25500;25501;25502;25503;25504 25503 17 EAQTSFLHLGYLPNQLFR Unmodified 2133.1007 0.10072368 2334 Q92499;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 By MS/MS By MS/MS 3.28 1.69 2 5 12 2 2 2 9 16 66.255 66.185 2;3 4.1659E-90 26163 20211116_3429_TMUAki_TMT10x_P_F2 324.41 303.11 115240000 192370000 1403300 183520000 127120000 151760000 122730000 83330000 82944000 92463000 121510000 107310000 179470000 8889000 187370000 121820000 155030000 123490000 88451000 87491000 89928000 116030000 42 42 27 42 42 42 42 42 42 42 42 50338000 79854000 547650 75833000 43274000 78558000 47650000 34882000 34939000 37947000 48971000 46871000 74498000 3319600 77687000 41613000 78880000 47712000 37762000 36599000 36935000 46807000 11 11 6 11 11 11 11 11 11 11 11 64904000 112520000 855670 107690000 83843000 73206000 75077000 48448000 48005000 54516000 72541000 60436000 104970000 5569400 109680000 80203000 76148000 75775000 50690000 50892000 52993000 69218000 31 31 21 31 31 31 31 31 31 31 31 71044000000 43809000000 27234000000 3741 2334 3496 21174;21175;21176;21177;21178;21179;21180;21181;21182;21183;21184;21185;21186;21187;21188;21189;21190;21191;21192;21193;21194;21195;21196;21197;21198 25505;25506;25507;25508;25509;25510;25511;25512;25513;25514;25515;25516;25517;25518;25519;25520;25521;25522;25523;25524;25525;25526;25527;25528;25529;25530;25531;25532;25533;25534;25535;25536;25537;25538;25539;25540;25541;25542;25543;25544;25545;25546;25547;25548;25549 25507 45 EASDPQPEEADGGLK Unmodified 1541.6845 0.68454569 1192 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 0 0 0 0 By MS/MS 1.5 0.5 1 1 2 37.567 37.574 3 0.00076293 9034 20211116_3440_TMUAki_TMT10x_S_F2 69.431 56.294 506090 954370 7943.4 908510 465930 497930 527930 670130 824770 583130 858660 471280 890360 48799 923930 448800 536450 541450 670040 827270 573100 827270 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 506090 954370 7943.4 908510 465930 497930 527930 670130 824770 583130 858660 471280 890360 48799 923930 448800 536450 541450 670040 827270 573100 827270 2 2 2 2 2 2 2 2 2 2 2 27089000 0 27089000 3742 1192 3497 21199;21200 25550;25551 25551 2 EASRPPEEPSAPSPTLPAQFK Unmodified 2235.1172 0.11716161 2800 Q9H3P2;Q9H3P2-7 NELFA Negative elongation factor A yes no 0 0 0 1 By MS/MS By MS/MS 4.8 0.4 1 4 4 1 49.098 49.273 3;4 3.2035E-17 14389 20211116_3433_TMUAki_TMT10x_P_F5 135.98 120.39 6100600 11018000 100010 11883000 6946400 7449900 6121800 8878500 8943100 7977900 9530100 5681000 10285000 610830 11996000 6645900 7895100 6340100 8928000 8995400 7828700 9175200 3 3 3 3 3 3 3 3 3 3 3 1113500 2058300 38726 2264500 2478800 3371500 2017400 1932200 1950100 1782200 1936400 1037100 1921400 147530 2312200 2367500 3334100 2068400 2032700 1986400 1746800 1868400 1 1 1 1 1 1 1 1 1 1 1 4987000 8960100 61280 9619000 4467700 4078400 4104400 6946300 6992900 6195700 7593700 4643900 8363100 463300 9683500 4278400 4561000 4271700 6895300 7009000 6081900 7306800 2 2 2 2 2 2 2 2 2 2 2 1275900000 984330000 291570000 3743 2800 3498 21201;21202;21203;21204;21205 25552;25553;25554;25555 25553 4 EATDAIGHLDR Unmodified 1196.5786 0.57856447 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 34.085 33.967 3 2.1347E-08 7581 20211116_3428_TMUAki_TMT10x_P_F1 145.09 122.36 1741000 2821600 47038 2571800 3101200 2642200 2024400 1629600 1774300 1498200 2451000 1621400 2631900 207230 2642300 2949400 2664600 2102000 1704000 1840000 1468600 2343400 4 4 4 4 4 4 4 4 4 4 4 1139000 1776500 31359 1505400 2423300 2060900 1296200 1024500 1112100 927680 1574200 1060700 1656700 141640 1563200 2297100 2042000 1368000 1091100 1155800 910010 1504200 2 2 2 2 2 2 2 2 2 2 2 602030 1045000 15679 1066400 677970 581350 728260 605060 662250 570530 876820 560670 975180 65589 1079100 652280 622690 734040 612960 684230 558630 839190 2 2 2 2 2 2 2 2 2 2 2 353210000 210790000 142410000 3744 1576 3499 21206;21207;21208;21209 25556;25557;25558;25559 25556 4 EATDPRPCEVENAVESWR Unmodified 2143.9593 0.95928076 1062 P47755;P47755-2 CAPZA2 F-actin-capping protein subunit alpha-2 yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 54.062 53.914 3 4.8174E-12 15639 20211116_3428_TMUAki_TMT10x_P_F1 130.38 108.37 4976900 8245700 55591 9139700 6239200 6707800 6138600 5207300 4648400 4491400 6548200 4634400 7697500 482110 9224500 5983300 6949700 6185800 5348800 4861600 4416000 6258000 3 3 3 3 3 3 3 3 3 3 3 2682900 4064700 16097 4856200 3975400 4742700 3964600 2253400 2058200 2098000 3306200 2498100 3795700 255530 4896500 3812500 4782600 3963100 2412000 2221600 2055400 3150700 1 1 1 1 1 1 1 1 1 1 1 2294000 4181000 39495 4283500 2263800 1965100 2174000 2954000 2590200 2393400 3242000 2136300 3901700 226580 4328000 2170700 2167200 2222800 2936700 2640000 2360600 3107200 2 2 2 2 2 2 2 2 2 2 2 828880000 614030000 214850000 3745 1062 3500 21210;21211;21212;21213 25560;25561;25562;25563;25564 25560 5 EATEQEIR Unmodified 974.46689 0.46688876 2707 Q9BWF3;Q9BWF3-3;Q9BWF3-4;Q9BWF3-2;Q9BQ04 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 0 0 0 0 By MS/MS 1 0 1 1 26.875 26.976 2 0.088488 6827 20211116_3439_TMUAki_TMT10x_S_F1 50.703 14.002 21908 39820 0 32501 18564 17546 23663 16190 16262 16720 24681 20399 37129 0 33449 17928 18767 23506 16546 17167 16308 23548 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21908 39820 0 32501 18564 17546 23663 16190 16262 16720 24681 20399 37129 0 33449 17928 18767 23506 16546 17167 16308 23548 1 1 0 1 1 1 1 1 1 1 1 758210 0 758210 3746 2707 3501 21214 25565 25565 1 EATGHFQESEPFSHIDPEESEETR Unmodified 2787.1896 0.18961086 1754 Q15021 NCAPD2 Condensin complex subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 43.457 43.297 4 8.7377E-23 11338 20211116_3428_TMUAki_TMT10x_P_F1 155.17 152.25 1485100 2734700 65622 3130900 1949100 2226300 1568700 2149500 2233600 1897400 2589500 1383200 2553200 187500 3152500 1863100 2322100 1631700 2181800 2255800 1863500 2487000 4 4 3 4 4 4 4 4 4 4 4 448030 743310 32640 886500 911760 1301000 736510 743920 649360 618470 920470 417410 694120 74059 900460 871810 1287300 753540 780720 674040 609190 879550 1 1 1 1 1 1 1 1 1 1 1 1037000 1991400 32983 2244400 1037400 925370 832230 1405600 1584200 1279000 1669000 965810 1859100 113440 2252100 991320 1034900 878170 1401100 1581800 1254300 1607400 3 3 2 3 3 3 3 3 3 3 3 908660000 577880000 330780000 3747 1754 3502 21215;21216;21217;21218;21219 25566;25567;25568;25569 25566 4 EATNPPVIQEEKPK Unmodified 1578.8253 0.82533668 868 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 38.098 38.192 3 2.2734E-23 9679 20211116_3431_TMUAki_TMT10x_P_F4 183.41 158.47 2934400 4717000 58974 5187300 7260600 4659100 3697000 3246800 4036300 2422200 4335000 2732600 4403300 347770 5250800 6875100 4747300 3946900 3347700 4102000 2399600 4172500 3 3 2 3 3 3 3 3 3 3 3 1668600 2679100 44327 2857600 5872200 3449100 2238200 1945700 2322400 1365200 2489200 1553900 2500500 238520 2911500 5541800 3443400 2462900 2036800 2364900 1357300 2396100 1 1 1 1 1 1 1 1 1 1 1 1265800 2037900 14647 2329700 1388500 1210100 1458900 1301100 1714000 1057000 1845800 1178600 1902700 109250 2339300 1333300 1303900 1484000 1311000 1737200 1042400 1776500 2 2 1 2 2 2 2 2 2 2 2 356100000 217920000 138180000 3748 868 3503 21220;21221 25570;25571;25572 25570 3 EATTEFSVDAR Unmodified 1224.5622 0.5622457 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.789 2 2 10 1 11 4 34.481 34.416 2 1.4035E-47 9478 20211116_3440_TMUAki_TMT10x_S_F2 302.3 246.77 7361700 11693000 115180 12053000 10757000 10755000 7509400 7225600 7960700 6781200 8974300 6854900 10912000 706360 12251000 10236000 10957000 7800900 7511300 8114800 6641200 8625800 13 13 5 13 13 13 13 13 13 13 13 3875600 5971700 4898.3 5976700 6887500 7495500 3942300 3700400 4118700 3618100 4665800 3608300 5572200 330010 6119600 6528200 7457000 4158300 3951400 4201800 3537000 4484000 9 9 3 9 9 9 9 9 9 9 9 3486100 5720800 110280 6076200 3869300 3259700 3567100 3525100 3842000 3163100 4308500 3246600 5339500 376350 6131600 3707800 3500400 3642500 3559900 3913100 3104100 4141800 4 4 2 4 4 4 4 4 4 4 4 885110000 500500000 384620000 3749 755 3504 21222;21223;21224;21225;21226;21227;21228;21229;21230;21231;21232;21233;21234;21235;21236 25573;25574;25575;25576;25577;25578;25579;25580;25581;25582;25583;25584;25585;25586;25587;25588;25589;25590 25587 18 EATVKPFAIDIFPVTNK Unmodified 1889.0299 0.02985015 2223 Q8NBJ7;Q8NBJ7-5;Q8NBJ7-4;Q8NBJ7-3 SUMF2 Sulfatase-modifying factor 2 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 75.188 75.146 3 2.9695E-15 24187 20211116_3428_TMUAki_TMT10x_P_F1 144.25 124.92 28705000 45908000 280470 44298000 30853000 44853000 35014000 25142000 24385000 25765000 33543000 26729000 42831000 2651000 45313000 29704000 45216000 34970000 26576000 25598000 25138000 32074000 7 7 5 7 7 7 7 7 7 7 7 17672000 27743000 271220 26985000 16622000 30756000 20730000 15823000 14813000 15938000 20033000 16456000 25885000 1703200 27639000 16058000 30764000 20630000 16845000 15514000 15562000 19163000 4 4 4 4 4 4 4 4 4 4 4 11033000 18164000 9252.7 17313000 14231000 14098000 14284000 9318900 9571500 9826900 13510000 10273000 16946000 947830 17674000 13646000 14453000 14340000 9731200 10083000 9576500 12911000 3 3 1 3 3 3 3 3 3 3 3 1908400000 994470000 913910000 3750 2223 3505 21237;21238;21239;21240 25591;25592;25593;25594;25595;25596;25597 25591 7 EATWVVDVK Unmodified 1045.5444 0.5444108 768 P22307;P22307-6;P22307-2;P22307-4;P22307-7;P22307-8 SCP2 Non-specific lipid-transfer protein yes no 0 0 0 0 By MS/MS 4 0 1 1 57.709 57.636 2 3.7768E-05 18007 20211116_3442_TMUAki_TMT10x_S_F4 152.34 98.183 4279300 6582800 60969 7769300 5168000 3959200 4380300 3827600 2904000 3881300 5067700 3984900 6146900 424050 7785200 4939200 4265500 4438600 3899900 3095700 3788500 4821600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4279300 6582800 60969 7769300 5168000 3959200 4380300 3827600 2904000 3881300 5067700 3984900 6146900 424050 7785200 4939200 4265500 4438600 3899900 3095700 3788500 4821600 1 1 1 1 1 1 1 1 1 1 1 191290000 0 191290000 3751 768 3506 21241 25598 25598 1 EAVAMESYAK Oxidation (M) 1113.5012 0.50122535 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 1 0 By MS/MS 3 0 1 1 35.153 34.913 3 0.0034462 10986 20211116_3441_TMUAki_TMT10x_S_F3 68.626 49.647 415410 712020 10547 655850 450130 355220 423060 490180 473660 434040 568090 386860 664180 44756 668550 431560 383450 432110 489890 483000 426220 545090 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 415410 712020 10547 655850 450130 355220 423060 490180 473660 434040 568090 386860 664180 44756 668550 431560 383450 432110 489890 483000 426220 545090 1 1 1 1 1 1 1 1 1 1 1 25259000 0 25259000 3752 1429 3507 21242 25599 25599 1924 1 EAVCEVALDYKK Unmodified 1423.7017 0.70171607 1475 Q01082 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 0 0 0 1 By MS/MS 5 0 1 1 50.199 50.39 3 0.00086895 14800 20211116_3433_TMUAki_TMT10x_P_F5 74.537 42.898 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3753 1475 3508 21243 25600 25600 1 EAVCFIPGEGHTLQEHQIVLVEGGR Unmodified 2774.381 0.38099764 175 O15235 MRPS12 28S ribosomal protein S12, mitochondrial yes yes 0 0 0 0 By MS/MS 3 0 1 1 57.624 57.221 4 3.2545E-05 20126 20211116_3441_TMUAki_TMT10x_S_F3 64.68 48.914 1556500 2587900 37038 2614200 1661600 1817700 1800500 2321100 2118500 1937200 2289000 1449500 2414900 165030 2653200 1598900 1912200 1828900 2323000 2147400 1907800 2202800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1556500 2587900 37038 2614200 1661600 1817700 1800500 2321100 2118500 1937200 2289000 1449500 2414900 165030 2653200 1598900 1912200 1828900 2323000 2147400 1907800 2202800 1 1 1 1 1 1 1 1 1 1 1 266420000 0 266420000 3754 175 3509 21244 25601 25601 1 EAVCIVLSDDTCSDEK Unmodified 1839.7866 0.78664427 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 By MS/MS By MS/MS 2.38 1.15 4 3 3 3 6 7 59.227 59.016 2;3 2.69E-89 20799 20211116_3441_TMUAki_TMT10x_S_F3 305.11 276.91 70524000 117510000 485000 118690000 88342000 95269000 80582000 66722000 64929000 69253000 89082000 65667000 109650000 6276500 120650000 84523000 97857000 81659000 69355000 67596000 67532000 85187000 17 17 10 17 17 17 17 17 17 17 17 30425000 48486000 203390 49565000 37410000 54977000 35897000 26893000 26694000 28261000 37324000 28329000 45246000 2673100 50569000 35836000 55042000 36206000 28801000 27937000 27545000 35676000 8 8 5 8 8 8 8 8 8 8 8 40099000 69019000 281610 69129000 50932000 40291000 44685000 39829000 38235000 40992000 51759000 37337000 64403000 3603400 70084000 48688000 42814000 45453000 40554000 39660000 39987000 49511000 9 9 5 9 9 9 9 9 9 9 9 12389000000 7805500000 4583500000 3755 1235 3510 21245;21246;21247;21248;21249;21250;21251;21252;21253;21254;21255;21256;21257 25602;25603;25604;25605;25606;25607;25608;25609;25610;25611;25612;25613;25614;25615;25616;25617;25618;25619;25620;25621 25619 20 EAVCIVLSDDTCSDEKIR Unmodified 2108.9718 0.97181928 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 1 By MS/MS 1 0 1 1 55.162 55.162 3 0.00014487 16127 20211116_3428_TMUAki_TMT10x_P_F1 70.944 57.072 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3756 1235 3511 21258 25622 25622 1 EAVELPLTHFELYK Unmodified 1687.8821 0.88212328 1032 P43686;P43686-2 PSMC4 26S protease regulatory subunit 6B yes no 0 0 0 0 By MS/MS By MS/MS 4.5 1.5 1 2 2 2 2 1 5 5 71.922 71.806 3 7.4602E-20 22297 20211116_3434_TMUAki_TMT10x_P_F6 152.74 136.52 61869000 105440000 415840 101830000 76942000 93533000 76311000 69760000 68426000 71060000 79354000 57607000 98373000 5483000 104020000 73769000 95263000 77194000 72166000 70345000 69347000 76212000 17 17 7 17 17 17 17 17 17 17 17 27208000 44611000 189370 44478000 29760000 51541000 32539000 29393000 29595000 30798000 33039000 25334000 41626000 2325100 45490000 28608000 51574000 32769000 31044000 30359000 30021000 31765000 7 7 2 7 7 7 7 7 7 7 7 34661000 60828000 226470 57354000 47181000 41992000 43772000 40367000 38831000 40262000 46315000 32273000 56746000 3158000 58526000 45161000 43689000 44425000 41121000 39985000 39326000 44447000 10 10 5 10 10 10 10 10 10 10 10 6491000000 3080800000 3410200000 3757 1032 3512 21259;21260;21261;21262;21263;21264;21265;21266;21267;21268 25623;25624;25625;25626;25627;25628;25629;25630;25631;25632;25633;25634;25635;25636;25637;25638;25639;25640;25641 25630 19 EAVEQFESQGVDLSNIVK Unmodified 1990.9848 0.98475045 1986 Q6NXE6;Q6NXE6-2 ARMC6 Armadillo repeat-containing protein 6 yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 75.961 75.889 3 4.5343E-08 27400 20211116_3441_TMUAki_TMT10x_S_F3 102.16 78.636 24367000 41675000 284970 37854000 26853000 32883000 28098000 22039000 19741000 22226000 28510000 22690000 38873000 2299700 38813000 25796000 33562000 28178000 22961000 20760000 21700000 27231000 6 6 5 6 6 6 6 6 6 6 6 9240900 15117000 151740 13470000 8069600 15927000 10084000 8231300 7443900 8848200 10385000 8605300 14099000 891140 13894000 7797300 15901000 10042000 8775800 7792800 8616200 9927400 2 2 2 2 2 2 2 2 2 2 2 15126000 26559000 133230 24385000 18784000 16956000 18015000 13808000 12297000 13378000 18125000 14085000 24774000 1408600 24919000 17998000 17662000 18136000 14185000 12967000 13084000 17304000 4 4 3 4 4 4 4 4 4 4 4 6059800000 1036600000 5023300000 3758 1986 3513 21269;21270;21271;21272;21273;21274 25642;25643;25644;25645;25646;25647;25648 25647 7 EAVFFQSHSAR Unmodified 1277.6153 0.61528433 959 P36954 POLR2I DNA-directed RNA polymerase II subunit RPB9 yes yes 0 0 0 0 By MS/MS 5 0 1 1 35.923 35.884 3 0.021147 9042 20211116_3433_TMUAki_TMT10x_P_F5 53.448 26.559 1247700 2069700 82313 1861000 2160300 2448900 1633500 1450700 1310300 1239300 1544700 1162400 1930500 192940 1922100 2063200 2436000 1674500 1519000 1355500 1219100 1482800 1 1 1 1 1 1 1 1 1 1 1 1247700 2069700 82313 1861000 2160300 2448900 1633500 1450700 1310300 1239300 1544700 1162400 1930500 192940 1922100 2063200 2436000 1674500 1519000 1355500 1219100 1482800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 122150000 122150000 0 3759 959 3514 21275 25649 25649 1 EAVGDLLDAFK Unmodified 1176.6027 0.60265396 1511 Q04637;Q04637-3;Q04637-8;Q04637-5;Q04637-4;Q04637-9;Q04637-6;Q04637-7 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.75 0.829 2 1 1 2 2 78.354 78.328 2 1.9959E-05 25456 20211116_3445_TMUAki_TMT10x_S_F6 111.06 79.983 10597000 18810000 121420 18536000 13626000 12087000 12734000 11848000 11072000 12474000 14799000 9868000 17551000 1034200 18832000 13050000 12706000 12912000 12077000 11469000 12157000 14161000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10597000 18810000 121420 18536000 13626000 12087000 12734000 11848000 11072000 12474000 14799000 9868000 17551000 1034200 18832000 13050000 12706000 12912000 12077000 11469000 12157000 14161000 2 2 2 2 2 2 2 2 2 2 2 1162500000 0 1162500000 3760 1511 3515 21276;21277;21278;21279 25650;25651;25652;25653 25653 4 EAVILPIKFPHLFTGKR Unmodified 1965.1564 0.15638807 3187;325 O75351;Q9UN37 VPS4B;VPS4A Vacuolar protein sorting-associated protein 4B;Vacuolar protein sorting-associated protein 4A no no 0 0 0 2 By MS/MS By MS/MS 6 0 2 1 1 64.022 64.009 5 1.5967E-21 19609 20211116_3445_TMUAki_TMT10x_S_F6 169.61 160.33 8647400 13194000 123710 14677000 7835600 9056200 8634200 5659300 6298900 6953400 8010400 8052500 12317000 818800 14784000 7540500 9496200 8644000 5964200 6571000 6737800 7674300 3 3 2 3 3 3 3 3 3 3 3 2625300 3528200 28029 4250300 2370000 3815300 2352000 1698900 1816600 2084500 2214900 2444600 3294900 240200 4278500 2273700 3866000 2370100 1845700 1885600 2019900 2124300 1 1 1 1 1 1 1 1 1 1 1 6022100 9665500 95679 10426000 5465600 5241000 6282200 3960400 4482400 4868900 5795400 5607900 9021800 578600 10505000 5266800 5630200 6273900 4118500 4685400 4717800 5550000 2 2 1 2 2 2 2 2 2 2 2 809930000 420180000 389750000 3761 325;3187 3516 21280;21281 25654;25655;25656 25655 3 EAVLLLK Unmodified 784.50584 0.50584045 953 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 0 0 By MS/MS By MS/MS 6 0.756 2 3 2 4 3 59.015 59.074 2 0.0050599 17170 20211116_3434_TMUAki_TMT10x_P_F6 110.35 24.499 9834300 14307000 0 16813000 15237000 16859000 9764200 7727700 8664600 9006300 10703000 9156600 13359000 874270 16975000 14471000 16967000 10156000 8356100 8935200 8743400 10262000 1 1 0 1 1 1 1 1 1 1 1 9834300 14307000 0 16813000 15237000 16859000 9764200 7727700 8664600 9006300 10703000 9156600 13359000 874270 16975000 14471000 16967000 10156000 8356100 8935200 8743400 10262000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 333760000 333760000 0 3762 953 3517 21282;21283;21284;21285;21286;21287;21288 25657;25658;25659;25660;25661;25662;25663 25659 7 EAVLLLKK Unmodified 912.6008 0.60080346 953 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 0 1 By MS/MS By MS/MS 3.33 3.3 2 1 1 2 52.67 52.543 3 0.0010247 15024 20211116_3428_TMUAki_TMT10x_P_F1 101.64 40.671 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3763 953 3518 21289;21290;21291 25664;25665;25666 25664 3 EAVQLVNTREEVEDLCR Unmodified 2059.0004 0.0004172906 1229 P54886;P54886-2 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes no 0 0 0 1 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 3 4 51.376 51.228 3 4.8537E-47 17580 20211116_3441_TMUAki_TMT10x_S_F3 239.8 205.75 24995000 43593000 235060 45504000 32645000 44223000 31027000 31965000 29062000 29809000 34046000 23274000 40684000 2304700 46268000 31269000 44855000 31496000 33054000 29829000 29202000 32688000 11 11 8 11 11 11 11 11 11 11 11 15411000 26924000 119820 27311000 23898000 35072000 22398000 20162000 17603000 18034000 20559000 14349000 25125000 1421100 27951000 22879000 34915000 22649000 21188000 18223000 17701000 19741000 6 6 4 6 6 6 6 6 6 6 6 9583700 16668000 115240 18193000 8746900 9151500 8629400 11803000 11459000 11775000 13486000 8924100 15559000 883580 18317000 8390500 9940200 8846900 11866000 11606000 11501000 12947000 5 5 4 5 5 5 5 5 5 5 5 4599100000 2468000000 2131100000 3764 1229 3519 21292;21293;21294;21295;21296;21297;21298 25667;25668;25669;25670;25671;25672;25673;25674;25675;25676;25677 25676 11 EAVQLVNTREEVEDLCRLDK Unmodified 2415.2064 0.20638732 1229 P54886;P54886-2 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes no 0 0 0 2 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 59.132 58.944 4 1.9561E-58 19223 20211116_3429_TMUAki_TMT10x_P_F2 241.76 204.39 43538000 70488000 563680 71375000 53768000 63368000 45082000 53517000 46987000 46392000 53293000 40539000 65776000 3932500 72632000 51348000 64828000 46242000 54696000 47941000 45602000 51215000 7 7 6 7 7 7 7 7 7 7 7 24034000 38853000 446610 39123000 29116000 46556000 28464000 31388000 26253000 24975000 29653000 22381000 36255000 2480000 40004000 27929000 46629000 28838000 32487000 26926000 24656000 28500000 4 4 4 4 4 4 4 4 4 4 4 19504000 31635000 117070 32252000 24652000 16812000 16618000 22129000 20733000 21417000 23640000 18158000 29521000 1452500 32628000 23420000 18199000 17404000 22210000 21016000 20946000 22715000 3 3 2 3 3 3 3 3 3 3 3 5483200000 3176300000 2306900000 3765 1229 3520 21299;21300;21301;21302;21303;21304 25678;25679;25680;25681;25682;25683;25684 25678 7 EAVTEILGIEPDREK Unmodified 1697.8836 0.88357984 1818 Q15631 TSN Translin yes yes 0 0 0 1 By MS/MS By MS/MS 3.22 1.31 1 2 2 2 2 5 4 60.978 60.89 3 1.8985E-33 20495 20211116_3430_TMUAki_TMT10x_P_F3 222.45 188.77 56518000 95521000 631370 100930000 74072000 108040000 66652000 78339000 81529000 80215000 79138000 52626000 89152000 5158000 102690000 70852000 108960000 68457000 81205000 82206000 78265000 76415000 8 8 7 8 8 8 8 8 8 8 8 37417000 61233000 275260 64899000 55812000 89250000 50037000 51309000 53213000 52682000 51235000 34838000 57150000 3254300 66313000 53363000 88567000 51155000 54123000 53926000 51395000 49486000 5 5 4 5 5 5 5 5 5 5 5 19102000 34289000 356110 36031000 18261000 18793000 16616000 27030000 28316000 27533000 27903000 17788000 32001000 1903800 36376000 17489000 20394000 17302000 27081000 28280000 26870000 26929000 3 3 3 3 3 3 3 3 3 3 3 8144800000 4808200000 3336600000 3766 1818 3521 21305;21306;21307;21308;21309;21310;21311;21312;21313 25685;25686;25687;25688;25689;25690;25691;25692;25693 25686 9 EAVTHIGR Unmodified 881.47191 0.47191456 519 P06730;P06730-2;P06730-3 EIF4E Eukaryotic translation initiation factor 4E yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 27.04 26.924 3 0.0052382 8035 20211116_3441_TMUAki_TMT10x_S_F3 78.334 20.141 129820 197830 0 196070 137020 137700 180640 114430 108760 116050 171530 120870 184590 7610.6 199270 132400 143360 178720 117560 116020 113270 163530 2 2 0 2 2 2 2 2 2 2 2 25015 36547 0 30929 29030 44148 26206 27896 23659 26658 32818 23292 34082 0 32147 27764 43794 26650 29146 24505 26086 31374 1 1 0 1 1 1 1 1 1 1 1 104800 161280 0 165140 107990 93556 154430 86531 85099 89387 138710 97574 150510 7610.6 167130 104640 99567 152070 88419 91510 87183 132150 1 1 0 1 1 1 1 1 1 1 1 18697000 1496300 17201000 3767 519 3522 21314;21315;21316 25694;25695;25696 25696 3 EAWPHIK Unmodified 879.46029 0.46028724 1170 P52209;P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 By MS/MS 6 0 2 2 40.547 40.711 3 0.026768 10089 20211116_3445_TMUAki_TMT10x_S_F6 60.76 37.93 694710 1045900 0 1377600 630360 511810 682310 706030 718670 599270 979450 646780 977160 48690 1369000 605200 579170 690500 704850 738780 589680 936770 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 694710 1045900 0 1377600 630360 511810 682310 706030 718670 599270 979450 646780 977160 48690 1369000 605200 579170 690500 704850 738780 589680 936770 1 1 0 1 1 1 1 1 1 1 1 52284000 0 52284000 3768 1170 3523 21317;21318 25697;25698 25697 2 EAYMGNVLQGGEGQAPTR Oxidation (M) 1892.8687 0.86867484 795 P24752;P24752-2 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes no 0 0 1 0 By MS/MS 3.5 0.5 1 1 2 37.91 37.841 3 1.0012E-08 9108 20211116_3442_TMUAki_TMT10x_S_F4 117.26 104.7 748450 1366200 16202 1634400 792420 646390 667480 940120 909610 767270 1121300 697000 1275800 75496 1633700 757650 726050 691090 935850 922290 756480 1075100 4 4 3 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 748450 1366200 16202 1634400 792420 646390 667480 940120 909610 767270 1121300 697000 1275800 75496 1633700 757650 726050 691090 935850 922290 756480 1075100 4 4 3 4 4 4 4 4 4 4 4 73900000 0 73900000 3769 795 3524 21319;21320 25699;25700;25701;25702 25701 940 4 EAYPEEAYIADLDAK Unmodified 1696.7832 0.7831971 1200 P53396;P53396-2 ACLY ATP-citrate synthase yes no 0 0 0 0 By MS/MS By MS/MS 2.41 0.771 4 14 14 2 27 7 65.872 65.775 2;3 1.3917E-48 24840 20211116_3441_TMUAki_TMT10x_S_F3 243.4 216.61 79618000 134970000 1019700 131380000 91718000 117850000 89995000 96479000 92938000 95870000 102470000 74136000 125930000 7248400 134080000 87931000 120410000 91467000 99153000 94758000 93657000 98552000 43 43 22 43 43 43 43 43 43 43 43 40737000 65578000 350520 63226000 45438000 79647000 50600000 47914000 44953000 46882000 48541000 37930000 61182000 3404300 64913000 43696000 79413000 50881000 50286000 46107000 45830000 46715000 34 34 17 34 34 34 34 34 34 34 34 38881000 69396000 669220 68150000 46280000 38203000 39396000 48565000 47985000 48988000 53926000 36206000 64749000 3844100 69164000 44236000 40999000 40586000 48867000 48651000 47827000 51837000 9 9 5 9 9 9 9 9 9 9 9 15582000000 8461600000 7120600000 3770 1200 3525 21321;21322;21323;21324;21325;21326;21327;21328;21329;21330;21331;21332;21333;21334;21335;21336;21337;21338;21339;21340;21341;21342;21343;21344;21345;21346;21347;21348;21349;21350;21351;21352;21353;21354 25703;25704;25705;25706;25707;25708;25709;25710;25711;25712;25713;25714;25715;25716;25717;25718;25719;25720;25721;25722;25723;25724;25725;25726;25727;25728;25729;25730;25731;25732;25733;25734;25735;25736;25737;25738;25739;25740;25741;25742;25743;25744;25745;25746;25747;25748;25749;25750;25751;25752 25751 50 EAYPGDVFYLHSR Unmodified 1552.731 0.73104237 805 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4.74 1.86 3 2 4 4 2 2 2 10 9 50.145 50.258 2;3 4.9201E-25 14474 20211116_3431_TMUAki_TMT10x_P_F4 220.5 175.34 44405000 73697000 642360 79492000 65919000 76092000 54207000 56163000 55723000 50745000 58904000 41348000 68789000 4295900 80634000 62932000 77279000 55644000 57946000 56735000 49784000 56724000 21 21 14 21 21 21 21 21 21 21 21 26857000 44145000 359740 46846000 47592000 60948000 37733000 34943000 33924000 31596000 34452000 25007000 41202000 2581000 47811000 45390000 60635000 38671000 36740000 34698000 30996000 33218000 13 13 7 13 13 13 13 13 13 13 13 17549000 29552000 282620 32645000 18326000 15144000 16475000 21219000 21798000 19150000 24452000 16342000 27587000 1714800 32824000 17542000 16643000 16972000 21206000 22037000 18788000 23506000 8 8 7 8 8 8 8 8 8 8 8 16260000000 10044000000 6215800000 3771 805 3526 21355;21356;21357;21358;21359;21360;21361;21362;21363;21364;21365;21366;21367;21368;21369;21370;21371;21372;21373 25753;25754;25755;25756;25757;25758;25759;25760;25761;25762;25763;25764;25765;25766;25767;25768;25769;25770;25771;25772;25773;25774;25775;25776;25777 25758 25 EAYTAVVYHNR Unmodified 1321.6415 0.64149908 2525 Q96N67;Q96N67-3;Q96N67-2;Q96N67-4;Q96N67-5;Q96N67-6 DOCK7 Dedicator of cytokinesis protein 7 yes no 0 0 0 0 By MS/MS 5 0 2 2 27.866 27.978 3 0.00072667 6140 20211116_3444_TMUAki_TMT10x_S_F5 80.037 59.708 166650 283950 9188.6 287140 156720 153930 185790 179020 156410 159540 217020 155240 264970 22241 290720 151550 165600 186030 180170 162560 156620 207480 4 4 4 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 166650 283950 9188.6 287140 156720 153930 185790 179020 156410 159540 217020 155240 264970 22241 290720 151550 165600 186030 180170 162560 156620 207480 4 4 4 4 4 4 4 4 4 4 4 8693200 0 8693200 3772 2525 3527 21374;21375 25778;25779;25780;25781 25781 4 ECADLWPR Unmodified 1045.4651 0.46511462 1369 P62829 RPL23 60S ribosomal protein L23 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 47.066 46.89 2 0.026926 14794 20211116_3430_TMUAki_TMT10x_P_F3 65.252 37.727 6627000 11655000 60302 14180000 11352000 8902700 6774300 9637600 9590900 8102300 11029000 6170800 10885000 661020 14209000 10772000 9411500 7198000 9715800 9684900 7976400 10595000 3 3 2 3 3 3 3 3 3 3 3 1949700 3525500 42497 4105200 7354100 5549400 3545600 2618100 2655200 2419700 3215800 1815700 3291800 276940 4168600 6958300 5498400 3768100 2803900 2760100 2371300 3084800 1 1 1 1 1 1 1 1 1 1 1 4677300 8129500 17806 10075000 3997400 3353300 3228700 7019500 6935700 5682600 7813300 4355100 7593000 384080 10040000 3814000 3913100 3429900 6911900 6924800 5605000 7510100 2 2 1 2 2 2 2 2 2 2 2 183030000 125330000 57701000 3773 1369 3528 21376;21377;21378 25782;25783;25784;25785 25782 4 ECCDKPLLEK Unmodified 1290.5948 0.59480816 38 CON__P02769 yes yes 0 0 0 1 By MS/MS 5 0 1 1 40.818 40.873 3 0.0068905 11024 20211116_3433_TMUAki_TMT10x_P_F5 66.498 46.035 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3774 38 3529 21379 25786 25786 1 ECCHGDLLECADDR Unmodified 1748.6553 0.65525294 38 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 34.056 34.051 3 5.9024E-14 7600 20211116_3428_TMUAki_TMT10x_P_F1 145.1 142.15 + 246630 417350 3261.2 454030 639600 464600 334310 397870 517420 329290 417460 229650 389570 26835 460750 605660 471150 360730 405840 514820 324430 405800 2 2 1 2 2 2 2 2 2 2 2 117840 182270 3261.2 224390 511930 336680 215370 205280 289630 170740 213830 109740 170230 18328 227620 483600 333110 236260 214310 288710 168180 208630 1 1 1 1 1 1 1 1 1 1 1 128790 235090 0 229640 127670 127910 118940 192590 227790 158550 203620 119900 219340 8506.4 233140 122060 138040 124470 191530 226120 156250 197170 1 1 0 1 1 1 1 1 1 1 1 61998000 47099000 14899000 3775 38 3530 21380;21381;21382 25787;25788;25789 25787 3 ECCHGDLLECADDRADLAK Unmodified 2246.9355 0.93545055 38 CON__P02769 yes yes 0 0 0 1 By MS/MS By MS/MS 2.56 1.01 3 6 5 4 9 9 41.762 41.691 3;4;5 4.973E-59 12633 20211116_3429_TMUAki_TMT10x_P_F2 256.11 241.18 + 72976000 93598000 1131100 117620000 208900000 151390000 122210000 250910000 253540000 189270000 152510000 67956000 87427000 8880900 118800000 198180000 154380000 132560000 248240000 248600000 187390000 150250000 26 26 14 26 26 26 26 26 26 26 26 45780000 57560000 931040 74812000 190540000 141860000 114880000 146280000 153790000 109620000 93943000 42632000 53774000 6589400 76105000 180850000 140490000 121690000 147410000 152630000 108570000 92476000 14 14 7 14 14 14 14 14 14 14 14 27196000 36038000 200030 42803000 18353000 9524200 7329400 104630000 99756000 79648000 58564000 25324000 33653000 2291500 42691000 17331000 13892000 10872000 100830000 95978000 78817000 57770000 12 12 7 12 12 12 12 12 12 12 12 24905000000 17287000000 7617700000 3776 38 3531 21383;21384;21385;21386;21387;21388;21389;21390;21391;21392;21393;21394;21395;21396;21397;21398;21399;21400 25790;25791;25792;25793;25794;25795;25796;25797;25798;25799;25800;25801;25802;25803;25804;25805;25806;25807;25808;25809;25810;25811;25812;25813;25814;25815 25794 26 ECDNALRELETVR Unmodified 1603.7624 0.76241885 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 47.585 47.439 3 3.3421E-21 15038 20211116_3439_TMUAki_TMT10x_S_F1 164.88 144.87 7026000 12025000 44187 13885000 13022000 14194000 8704900 10118000 10157000 9695700 10945000 6542100 11227000 685790 14038000 12379000 14349000 9100400 10480000 10298000 9486700 10534000 5 5 4 5 5 5 5 5 5 5 5 4537400 7596600 34486 8663700 10656000 12130000 6786100 6549000 6384200 6263900 7065900 4224800 7092400 472130 8814900 10121000 12018000 7073400 6931700 6536600 6129400 6795100 3 3 2 3 3 3 3 3 3 3 3 2488700 4428200 9700.7 5221300 2366500 2063900 1918700 3568800 3773200 3431700 3878900 2317300 4134900 213660 5223400 2258400 2331200 2027100 3548500 3761200 3357300 3738500 2 2 2 2 2 2 2 2 2 2 2 1104700000 764440000 340250000 3777 3293 3532 21401;21402;21403;21404;21405;21406 25816;25817;25818;25819;25820;25821 25819 6 ECENCDCLQGFQLTHSLGGGTGSGMGTLLISK Oxidation (M) 3442.5262 0.52615961 1640 Q13509;Q13509-2 TUBB3 Tubulin beta-3 chain yes no 0 0 1 0 By MS/MS By MS/MS 6.07 1.24 2 3 4 4 2 7 8 68.409 68.51 3;4 6.1918E-98 23410 20211116_3446_TMUAki_TMT10x_S_F7 265.71 259.99 48644000 84584000 503870 75328000 53624000 67309000 49435000 39422000 40219000 47441000 54394000 45294000 78891000 3332500 77381000 51325000 68438000 50078000 41729000 41822000 46003000 52033000 22 22 13 22 22 22 22 22 22 22 22 20350000 32343000 94570 29644000 17822000 36356000 18045000 16158000 16503000 18440000 21657000 18947000 30169000 1137200 30533000 17089000 36169000 18245000 17516000 17040000 17915000 20733000 9 9 3 9 9 9 9 9 9 9 9 28294000 52241000 409300 45683000 35802000 30953000 31390000 23263000 23715000 29002000 32737000 26347000 48722000 2195300 46848000 34237000 32268000 31833000 24212000 24782000 28088000 31300000 13 13 10 13 13 13 13 13 13 13 13 38534000000 20460000000 18074000000 3778 1640 3533 21407;21408;21409;21410;21411;21412;21413;21414;21415;21416;21417;21418;21419;21420;21421 25822;25823;25824;25825;25826;25827;25828;25829;25830;25831;25832;25833;25834;25835;25836;25837;25838;25839;25840;25841;25842;25843 25839 2202 22 ECENCDCLQGFQLTHSLGGGTGSGMGTLLISK Unmodified 3426.5312 0.53124499 1640 Q13509;Q13509-2 TUBB3 Tubulin beta-3 chain yes no 0 0 0 0 By MS/MS By MS/MS 6.38 1.32 1 1 2 2 2 5 3 75.029 75.057 4 1.3648E-11 24355 20211116_3436_TMUAki_TMT10x_P_F8 101.27 93.823 74724000 124630000 631080 121140000 74741000 95561000 76518000 48591000 49258000 56446000 75190000 69579000 116280000 4579100 123450000 71742000 97874000 76678000 52009000 52224000 54804000 71730000 9 9 5 9 9 9 9 9 9 9 9 44627000 69421000 531180 72481000 39519000 63336000 41375000 27384000 29289000 33754000 44139000 41555000 64789000 4031500 73590000 37966000 64279000 41497000 29847000 30852000 32704000 42119000 6 6 4 6 6 6 6 6 6 6 6 30097000 55212000 99896 48659000 35221000 32225000 35143000 21207000 19969000 22691000 31051000 28024000 51494000 547590 49857000 33776000 33595000 35181000 22162000 21372000 22101000 29611000 3 3 1 3 3 3 3 3 3 3 3 21553000000 11762000000 9790900000 3779 1640 3533 21422;21423;21424;21425;21426;21427;21428;21429 25844;25845;25846;25847;25848;25849;25850;25851;25852 25849 9 ECEPPSAGAAVTARPGQEIR Unmodified 2095.0117 0.011650679 2749 Q9C0E8;Q9C0E8-3;Q9C0E8-2;Q9C0E8-4 LNP Protein lunapark yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 34.066 33.959 3 1.0865E-64 10550 20211116_3441_TMUAki_TMT10x_S_F3 273.01 248.97 868060 1252800 7214.9 1771500 1886200 1588100 947410 1217900 1317700 940290 1264800 808270 1170900 88922 1767800 1785100 1620800 1021500 1248600 1322500 929780 1221700 2 2 1 2 2 2 2 2 2 2 2 516500 712150 7214.9 1023900 1614600 1334400 707870 718680 795210 524010 734620 480960 665680 64925 1027200 1525800 1326400 768140 755950 803020 519800 710540 1 1 1 1 1 1 1 1 1 1 1 351560 540650 0 747610 271580 253720 239530 499210 522500 416280 530160 327310 505260 23997 740680 259340 294460 253400 492690 519440 409980 511190 1 1 0 1 1 1 1 1 1 1 1 196530000 117880000 78647000 3780 2749 3534 21430;21431 25853;25854 25854 2 ECERDYQDDTLELYNREDR Unmodified 2518.0667 0.066658955 1116 P49750;P49750-3;P49750-1 YLPM1 YLP motif-containing protein 1 yes no 0 0 0 2 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 41.041 40.949 4 8.145E-59 12421 20211116_3439_TMUAki_TMT10x_S_F1 256 244.04 1898000 2834800 13259 3852000 4266000 3957800 2291800 2502700 2625400 2281400 2725200 1767300 2649000 202270 3859400 4041600 3992700 2438200 2611400 2659800 2237300 2625800 3 3 2 3 3 3 3 3 3 3 3 1599800 2382600 13259 3178800 4036600 3733100 2095100 2117300 2212300 1921700 2296400 1489700 2226200 179120 3194900 3822500 3732500 2230300 2228400 2248500 1884900 2212600 2 2 2 2 2 2 2 2 2 2 2 298180 452220 0 673240 229360 224720 196630 385420 413130 359740 428870 277630 422800 23144 664490 219060 260200 207870 382990 411370 352400 413230 1 1 0 1 1 1 1 1 1 1 1 699310000 460090000 239220000 3781 1116 3535 21432;21433;21434;21435 25855;25856;25857 25857 3 ECGNYPGFLTILR Unmodified 1538.7551 0.75514863 2258 Q8NI27 THOC2 THO complex subunit 2 yes yes 0 0 0 0 By MS/MS 7 0 1 1 72.995 73.166 2 0.0068326 25397 20211116_3446_TMUAki_TMT10x_S_F7 66.617 35.244 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3782 2258 3536 21436 25858 25858 1 ECGQLLISENQK Unmodified 1417.6871 0.68712864 2146 Q8IWS0;Q8IWS0-5;Q8IWS0-3;Q8IWS0-2;Q8IWS0-4 PHF6 PHD finger protein 6 yes no 0 0 0 0 By MS/MS 4 0 1 1 45.987 46.189 3 0.043022 13204 20211116_3442_TMUAki_TMT10x_S_F4 41.099 18.181 2204100 3527100 13453 3927300 1873000 1650500 1910600 2120400 2422700 1989100 2798800 2052300 3292600 190630 3944100 1797700 1832400 1951900 2128200 2455600 1948100 2688200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2204100 3527100 13453 3927300 1873000 1650500 1910600 2120400 2422700 1989100 2798800 2052300 3292600 190630 3944100 1797700 1832400 1951900 2128200 2455600 1948100 2688200 1 1 1 1 1 1 1 1 1 1 1 63589000 0 63589000 3783 2146 3537 21437 25859 25859 1 ECLPLIIFLR Unmodified 1272.7264 0.72641468 1362 P62701 RPS4X 40S ribosomal protein S4, X isoform yes yes 0 0 0 0 By MS/MS By MS/MS 3.57 2.87 2 2 1 2 3 4 80.192 80.17 2 1.0176E-08 27800 20211116_3429_TMUAki_TMT10x_P_F2 175.44 144.83 38642000 63659000 162210 57255000 37836000 53448000 41026000 29788000 21351000 36255000 41242000 35976000 59376000 2801500 58805000 36333000 54153000 40838000 31674000 23287000 35142000 39169000 4 4 1 4 4 4 4 4 4 4 4 18159000 28653000 162210 26346000 18123000 32812000 18622000 14284000 10761000 17128000 19478000 16908000 26728000 1477400 27137000 17388000 32612000 18619000 15543000 11601000 16611000 18520000 2 2 1 2 2 2 2 2 2 2 2 20482000 35005000 0 30909000 19713000 20636000 22404000 15505000 10589000 19126000 21764000 19068000 32648000 1324100 31668000 18945000 21541000 22219000 16131000 11686000 18531000 20649000 2 2 0 2 2 2 2 2 2 2 2 6515400000 3171900000 3343500000 3784 1362 3538 21438;21439;21440;21441;21442;21443;21444 25860;25861;25862;25863;25864;25865;25866 25861 7 ECLQALEFLHANQVIHR Unmodified 2077.0527 0.052727633 1606 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.756 2 3 2 3 4 58.681 58.971 3;4 2.7853E-36 18891 20211116_3435_TMUAki_TMT10x_P_F7 213.49 201 16686000 31135000 217520 28127000 20416000 24498000 21059000 23759000 22974000 18752000 24618000 15537000 29041000 1543400 28853000 19599000 25164000 21386000 24044000 23347000 18521000 23697000 8 8 6 8 8 8 8 8 8 8 8 6324200 11301000 89989 9904300 7260100 13250000 8876600 8986700 8580000 7054700 9113900 5889200 10540000 621300 10253000 7007400 13196000 8910200 9294300 8760600 6969500 8775300 3 3 3 3 3 3 3 3 3 3 3 10362000 19834000 127530 18223000 13156000 11248000 12182000 14772000 14394000 11697000 15504000 9648000 18501000 922070 18600000 12591000 11968000 12476000 14749000 14586000 11551000 14922000 5 5 3 5 5 5 5 5 5 5 5 8588400000 3825700000 4762600000 3785 1606 3539 21445;21446;21447;21448;21449;21450;21451 25867;25868;25869;25870;25871;25872;25873;25874 25868 8 ECLQHPGGATPVCVYTR Unmodified 1943.8982 0.89820083 2736 Q9BZE9;Q9BZE9-2;Q9BZE9-4;Q9BZE9-3 ASPSCR1 Tether containing UBX domain for GLUT4 yes no 0 0 0 0 By MS/MS 5 0 1 1 37.356 37.344 3 1.5917E-05 9657 20211116_3433_TMUAki_TMT10x_P_F5 88.486 82.21 368340 561180 7361.4 595190 817140 807880 472430 470410 499400 437830 532830 343020 523760 43684 607970 775290 802310 498070 494340 508060 428950 512960 1 1 1 1 1 1 1 1 1 1 1 368340 561180 7361.4 595190 817140 807880 472430 470410 499400 437830 532830 343020 523760 43684 607970 775290 802310 498070 494340 508060 428950 512960 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 56980000 56980000 0 3786 2736 3540 21452 25875 25875 1 ECPSDECGAGVFMASHFDR Oxidation (M) 2186.8456 0.84557291 1387 P62979 RPS27A Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a yes yes 0 0 1 0 By MS/MS By MS/MS 2.56 1.07 2 2 3 2 5 4 43.1 43.045 3 5.0587E-18 13172 20211116_3430_TMUAki_TMT10x_P_F3 154.31 145.92 7701100 12968000 73944 16875000 15897000 17820000 10106000 13480000 13205000 11240000 13892000 7170600 12115000 710360 16953000 15098000 17998000 10650000 13857000 13322000 11070000 13380000 12 12 6 12 12 12 12 12 12 12 12 4806600 8146700 16162 10421000 13528000 15449000 8145500 8301300 7874900 6974600 8676900 4475100 7610200 481190 10545000 12833000 15267000 8535400 8761200 8051700 6866400 8345500 7 7 2 7 7 7 7 7 7 7 7 2894500 4821100 57782 6454000 2369000 2371000 1960900 5178400 5329600 4265400 5215500 2695500 4504700 229170 6407800 2264800 2730400 2114600 5096000 5270500 4203400 5034700 5 5 4 5 5 5 5 5 5 5 5 13934000000 8491500000 5442900000 3787 1387 3541 21453;21454;21455;21456;21457;21458;21459;21460;21461 25876;25877;25878;25879;25880;25881;25882;25883;25884;25885;25886;25887;25888 25880 1864 13 ECPSDECGAGVFMASHFDR Unmodified 2170.8507 0.85065829 1387 P62979 RPS27A Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a yes yes 0 0 0 0 By MS/MS By MS/MS 3 1.41 2 2 2 2 2 5 5 51.159 51.11 3 1.4661E-63 16444 20211116_3430_TMUAki_TMT10x_P_F3 258.13 250.68 21978000 38099000 262030 43763000 31287000 32938000 25570000 22531000 21105000 19309000 28089000 20463000 35572000 1647800 44084000 29856000 33989000 26098000 23337000 21914000 18991000 26880000 14 14 8 14 14 14 14 14 14 14 14 13689000 23647000 203380 27558000 22700000 26519000 19151000 12448000 12343000 11226000 16579000 12746000 22080000 1050000 27822000 21682000 26763000 19400000 13330000 13005000 11014000 15862000 8 8 5 8 8 8 8 8 8 8 8 8288800 14452000 58648 16205000 8587600 6419200 6419200 10083000 8761900 8083800 11510000 7716900 13492000 597780 16262000 8173500 7225400 6697200 10007000 8908700 7977400 11018000 6 6 3 6 6 6 6 6 6 6 6 18507000000 10497000000 8009600000 3788 1387 3541 21462;21463;21464;21465;21466;21467;21468;21469;21470;21471 25889;25890;25891;25892;25893;25894;25895;25896;25897;25898;25899;25900;25901;25902 25892 14 ECPSVLEYK Unmodified 1123.522 0.52196079 3335 Q9Y617;Q9Y617-2 PSAT1 Phosphoserine aminotransferase yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 1 1 1 1 2 48.264 48.412 2;3 1.9794E-05 13765 20211116_3431_TMUAki_TMT10x_P_F4 156.94 104.94 2319200 2896900 23289 4646800 14568000 8188400 4011700 3787800 4309100 3378200 4376700 2159600 2709600 385530 4669800 13704000 8024500 4630400 4061000 4373100 3316200 4220000 1 1 1 1 1 1 1 1 1 1 1 2319200 2896900 23289 4646800 14568000 8188400 4011700 3787800 4309100 3378200 4376700 2159600 2709600 385530 4669800 13704000 8024500 4630400 4061000 4373100 3316200 4220000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 490450000 490450000 0 3789 3335 3542 21472;21473;21474 25903;25904;25905 25903 3 ECQAALEVLQESPLYDCR Unmodified 2179.9878 0.98780369 89 O00451 GFRA2 GDNF family receptor alpha-2 yes yes 0 0 0 0 By MS/MS By MS/MS 2.11 0.994 3 3 2 1 5 4 74.801 74.69 2;3 3.5654E-79 25611 20211116_3429_TMUAki_TMT10x_P_F2 299.64 285.73 27816000 49035000 220740 43341000 36561000 49422000 37543000 44244000 33891000 39983000 41456000 25900000 45734000 2324000 44708000 35088000 49856000 37917000 45118000 34907000 39225000 39757000 16 16 9 16 16 16 16 16 16 16 16 13394000 22661000 127550 19577000 14460000 30445000 18294000 22885000 17268000 19839000 19791000 12471000 21134000 1146200 20352000 13963000 30175000 18325000 23559000 17701000 19501000 19014000 8 8 3 8 8 8 8 8 8 8 8 14423000 26374000 93190 23763000 22101000 18977000 19248000 21359000 16623000 20144000 21665000 13429000 24600000 1177800 24355000 21125000 19681000 19592000 21560000 17205000 19724000 20744000 8 8 6 8 8 8 8 8 8 8 8 6983000000 3520700000 3462300000 3790 89 3543 21475;21476;21477;21478;21479;21480;21481;21482;21483 25906;25907;25908;25909;25910;25911;25912;25913;25914;25915;25916;25917;25918;25919;25920;25921;25922 25911 17 ECREPELGLEELLR Unmodified 1741.8669 0.86688392 3035 Q9NZL4;Q9NZL4-3;Q9NZL4-2 HSPBP1 Hsp70-binding protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 62.464 62.293 3 2.3456E-25 21108 20211116_3439_TMUAki_TMT10x_S_F1 199.15 160.36 19173000 33340000 195610 30206000 22025000 30131000 21851000 26010000 22651000 24882000 25725000 17854000 31098000 1804700 31035000 21126000 30607000 22198000 26620000 23117000 24347000 24721000 5 5 4 5 5 5 5 5 5 5 5 8201200 13803000 154640 12818000 9584900 17255000 10569000 10790000 9303400 10194000 10878000 7637300 12876000 843440 13212000 9224600 17159000 10630000 11279000 9575900 9981000 10445000 2 2 2 2 2 2 2 2 2 2 2 10972000 19537000 40962 17388000 12440000 12876000 11281000 15220000 13347000 14687000 14847000 10216000 18222000 961290 17823000 11901000 13448000 11568000 15340000 13542000 14366000 14276000 3 3 2 3 3 3 3 3 3 3 3 1713500000 915150000 798310000 3791 3035 3544 21484;21485;21486 25923;25924;25925;25926;25927 25926 5 ECSLQVPEDELVSTLK Unmodified 1845.903 0.90299466 627 P11441 UBL4A Ubiquitin-like protein 4A yes yes 0 0 0 0 By MS/MS 1 0 1 1 71.942 71.942 3 0.01407 23014 20211116_3428_TMUAki_TMT10x_P_F1 45.257 27.34 2697600 3949300 16952 3902100 2513900 4859000 3230300 2627600 2203500 2725000 3479500 2511900 3684900 236880 3998400 2429500 4840900 3207400 2787100 2331900 2657400 3317000 1 1 1 1 1 1 1 1 1 1 1 2697600 3949300 16952 3902100 2513900 4859000 3230300 2627600 2203500 2725000 3479500 2511900 3684900 236880 3998400 2429500 4840900 3207400 2787100 2331900 2657400 3317000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 277120000 277120000 0 3792 627 3545 21487 25928 25928 1 ECTLLPETAHPDAAFQLTHAAQQLK Unmodified 2789.3807 0.38066329 2559 Q96SY0;Q96SY0-4;Q96SY0-3 VWA9 von Willebrand factor A domain-containing protein 9 yes no 0 0 0 0 By MS/MS 7 0 1 1 62.934 63.391 4 5.6203E-17 21265 20211116_3446_TMUAki_TMT10x_S_F7 130.09 121.8 1742000 2998800 33482 2794400 2182400 2309700 1980500 2519600 2315700 2435800 2412400 1622200 2797400 181800 2857900 2089500 2387600 2029800 2548700 2344600 2382400 2324100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1742000 2998800 33482 2794400 2182400 2309700 1980500 2519600 2315700 2435800 2412400 1622200 2797400 181800 2857900 2089500 2387600 2029800 2548700 2344600 2382400 2324100 1 1 1 1 1 1 1 1 1 1 1 751750000 0 751750000 3793 2559 3546 21488 25929 25929 1 EDAANNYAR Unmodified 1022.4417 0.44173664 1417;2044 P68363;P68363-2;P68366;P68366-2;A6NHL2;A6NHL2-2;Q71U36;Q71U36-2;Q9BQE3;P0DPH8;P0DPH7;P0DPH7-2;Q9NY65;Q9NY65-2 TUBA1B;TUBA4A;TUBAL3;TUBA1A;TUBA1C;TUBA8 Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-8 chain no no 0 0 0 0 By MS/MS 1 0 1 1 26.555 26.555 2 0.073456 4640 20211116_3428_TMUAki_TMT10x_P_F1 50.878 34.724 7245.4 22308 0 14138 8986.3 13984 9064.2 5897.7 7182.8 7564.1 14443 6746.2 20786 0 14998 8618.4 14074 9131.9 6454.4 7647.2 7318.9 13708 1 1 0 1 1 1 1 1 1 1 1 7245.4 22308 0 14138 8986.3 13984 9064.2 5897.7 7182.8 7564.1 14443 6746.2 20786 0 14998 8618.4 14074 9131.9 6454.4 7647.2 7318.9 13708 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 484760 484760 0 3794 1417;2044 3547 21489 25930 25930 1 EDAMAMVDHCLK 2 Oxidation (M) 1450.5891 0.58907086 1026 P43243;P43243-2 MATR3 Matrin-3 yes no 0 0 2 0 By MS/MS 3 0 1 1 34.295 34.274 3 0.040692 9537 20211116_3430_TMUAki_TMT10x_P_F3 42.976 36.873 33884 49133 3502.6 68972 76158 55116 33165 26221 23789 22105 39375 31576 45920 6665.6 68755 72155 56354 35599 27995 25164 21758 37501 1 1 1 1 1 1 1 1 1 1 1 33884 49133 3502.6 68972 76158 55116 33165 26221 23789 22105 39375 31576 45920 6665.6 68755 72155 56354 35599 27995 25164 21758 37501 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2455300 2455300 0 3795 1026 3548 21490 25931 25931 1323;1324 1 EDAPIGPHLQSMPSEQIR Oxidation (M) 2019.9684 0.96838888 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 1 0 By MS/MS By MS/MS 2.8 0.748 2 2 1 3 2 38.597 38.528 3 3.342E-08 12438 20211116_3441_TMUAki_TMT10x_S_F3 107.13 89.119 1692300 3061500 4115.5 3705600 4154300 4309300 2372200 2809800 3211100 2381900 2854800 1575400 2859100 139090 3743900 3936200 4319100 2525400 2919700 3217400 2343900 2765000 7 7 1 7 7 7 7 7 7 7 7 1226900 2228500 0 2664300 3815900 3911500 2024900 2035600 2303000 1650100 2070700 1142100 2081100 105240 2705900 3611700 3865700 2156200 2152800 2322500 1627400 2004800 4 4 0 4 4 4 4 4 4 4 4 465400 833000 4115.5 1041300 338370 397760 347300 774170 908100 731830 784060 433310 778060 33845 1038000 324480 453360 369180 766860 894890 716490 760190 3 3 1 3 3 3 3 3 3 3 3 700250000 353030000 347210000 3796 1684 3549 21491;21492;21493;21494;21495 25932;25933;25934;25935;25936;25937;25938 25938 2248 7 EDAPIGPHLQSMPSEQIR Unmodified 2003.9735 0.97347426 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 45.372 45.39 3 5.5296E-05 14091 20211116_3430_TMUAki_TMT10x_P_F3 78.848 67.408 4785700 5993300 0 14266000 25982000 11368000 6648100 4721000 6727400 3148900 7554700 4455200 5623300 594840 13926000 24420000 11611000 7756800 5088400 6869900 3140200 7262100 2 2 0 2 2 2 2 2 2 2 2 4785700 5993300 0 14266000 25982000 11368000 6648100 4721000 6727400 3148900 7554700 4455200 5623300 594840 13926000 24420000 11611000 7756800 5088400 6869900 3140200 7262100 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 180470000 180470000 0 3797 1684 3549 21496;21497 25939;25940;25941 25939 3 EDDRVAIHEAMEQQTISIAK Oxidation (M) 2299.1114 0.1114243 912 P33992 MCM5 DNA replication licensing factor MCM5 yes yes 0 0 1 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 44.656 44.48 4 5.0599E-07 14847 20211116_3441_TMUAki_TMT10x_S_F3 97.488 84.451 3056900 5031600 0 5356700 6049100 7306400 3818900 5383800 5396700 5077200 4652300 2846000 4696300 261530 5471000 5741900 7279800 4039100 5561700 5394700 4971300 4511000 2 2 0 2 2 2 2 2 2 2 2 2480800 3905500 0 4323800 5438700 6653000 3265900 3961800 4209000 3890000 3586400 2309700 3645800 222000 4416300 5158600 6573500 3455500 4161700 4218500 3802100 3479000 1 1 0 1 1 1 1 1 1 1 1 576100 1126100 0 1032900 610380 653340 553010 1422000 1187700 1187200 1065900 536330 1050400 39528 1054700 583250 706260 583590 1400000 1176200 1169200 1032000 1 1 0 1 1 1 1 1 1 1 1 990640000 868580000 122060000 3798 912 3550 21498;21499;21500 25942;25943 25943 1129 2 EDGAISTIVLR Unmodified 1172.6401 0.6401021 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 53.833 53.701 2 3.0645E-14 16291 20211116_3442_TMUAki_TMT10x_S_F4 183 140 47069000 66513000 200250 96559000 61430000 58904000 43604000 39352000 41180000 38417000 52642000 43826000 62176000 4026600 95820000 58449000 61891000 45086000 40969000 42406000 37558000 50427000 9 9 4 9 9 9 9 9 9 9 9 30684000 42366000 98068 62894000 48506000 48345000 30848000 24307000 25945000 24382000 33129000 28568000 39609000 2628400 62495000 46055000 49608000 32062000 25929000 26864000 23809000 31736000 5 5 2 5 5 5 5 5 5 5 5 16386000 24146000 102190 33665000 12924000 10559000 12755000 15045000 15235000 14035000 19513000 15257000 22567000 1398100 33326000 12394000 12282000 13024000 15040000 15542000 13749000 18691000 4 4 2 4 4 4 4 4 4 4 4 4560200000 2486200000 2074000000 3799 1146 3551 21501;21502;21503;21504;21505;21506 25944;25945;25946;25947;25948;25949;25950;25951;25952 25952 9 EDGEGNVWIAK Unmodified 1216.5724 0.57241646 2256 Q8NG68 TTL Tubulin--tyrosine ligase yes yes 0 0 0 0 By MS/MS 6 0 1 1 53.868 53.973 3 0.08892 15382 20211116_3445_TMUAki_TMT10x_S_F6 30.872 6.0176 11443000 21775000 0 24515000 9100700 6789000 6251500 29760000 11852000 15197000 24558000 10654000 20329000 816660 24551000 8648100 8525700 6663500 28663000 12263000 15442000 23297000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11443000 21775000 0 24515000 9100700 6789000 6251500 29760000 11852000 15197000 24558000 10654000 20329000 816660 24551000 8648100 8525700 6663500 28663000 12263000 15442000 23297000 1 1 0 1 1 1 1 1 1 1 1 2416600000 0 2416600000 3800 2256 3552 21507 25953 25953 1 EDGLAQQQTQLNLR Unmodified 1612.8169 0.81689726 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 2.43 0.728 1 2 4 4 3 43.924 43.779 2;3 4.0461E-116 13341 20211116_3430_TMUAki_TMT10x_P_F3 385.2 321.24 5162300 7732700 21514 9554000 9098900 8506100 5488600 7381600 7920700 6048500 7728000 4806600 7222200 478620 9602300 8633400 8704800 5831400 7521900 7944700 5962200 7460900 5 5 2 5 5 5 5 5 5 5 5 2932000 4315200 6002.4 5318000 7356300 6710200 3773600 4133900 4398700 3329200 4256700 2729800 4030300 289460 5375200 6962500 6692100 4034400 4309000 4442500 3284600 4110700 3 3 1 3 3 3 3 3 3 3 3 2230400 3417500 15512 4236000 1742600 1795900 1714900 3247700 3522000 2719300 3471200 2076800 3192000 189150 4227100 1670900 2012700 1796900 3212900 3502100 2677600 3350100 2 2 1 2 2 2 2 2 2 2 2 1215300000 957390000 257920000 3801 1092 3553 21508;21509;21510;21511;21512;21513;21514 25954;25955;25956;25957;25958;25959 25956 6 EDGMVPFVFVGTK Oxidation (M) 1440.6959 0.69590241 1148 P51114;P51114-2;P51114-3 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 0 0 1 0 By MS/MS 5 0 1 1 69.639 69.656 3 0.00295 21592 20211116_3444_TMUAki_TMT10x_S_F5 66.215 40.556 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3802 1148 3554 21515 25960 25960 1530 1 EDGNEEDKENQGDETQGQQPPQRR Unmodified 2783.1979 0.19788414 1410 P67809 YBX1 Nuclease-sensitive element-binding protein 1 yes yes 0 0 0 2 By MS/MS 1.5 0.5 1 1 2 23.976 23.862 4 5.4395E-48 5189 20211116_3429_TMUAki_TMT10x_P_F2 208.39 188.9 92739 158710 0 118610 178460 172230 109910 71291 67933 60174 122470 86343 147940 8138.9 124630 169340 169880 113770 77245 72882 59227 116450 1 1 0 1 1 1 1 1 1 1 1 92739 158710 0 118610 178460 172230 109910 71291 67933 60174 122470 86343 147940 8138.9 124630 169340 169880 113770 77245 72882 59227 116450 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 46574000 46574000 0 3803 1410 3555 21516;21517 25961 25961 1 EDGSGDRGDGPFR Unmodified 1363.5753 0.57527001 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 28.966 28.915 3 2.2882E-06 7390 20211116_3439_TMUAki_TMT10x_S_F1 113.8 99.591 344370 570880 12300 574240 685120 614230 427600 390690 407560 338970 463820 320730 532700 44787 586180 651200 618250 446580 406960 417500 333180 445690 3 3 3 3 3 3 3 3 3 3 3 266410 451650 8298.9 435330 618030 536170 321500 285810 312310 249710 351640 248120 421380 34746 446770 585640 534370 341330 302140 319520 245360 338000 2 2 2 2 2 2 2 2 2 2 2 77957 119230 4001.3 138910 67089 78061 106100 104880 95248 89262 112180 72615 111330 10040 139410 65552 83880 105250 104820 97974 87821 107690 1 1 1 1 1 1 1 1 1 1 1 43080000 33769000 9310900 3804 648 3556 21518;21519;21520 25962;25963;25964 25964 3 EDITQSAQHALR Unmodified 1367.6793 0.67934115 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 0 By MS/MS By MS/MS 3 1.22 2 1 1 2 2 34.413 34.318 3 3.9216E-12 9388 20211116_3429_TMUAki_TMT10x_P_F2 132.5 116.28 746270 1145200 5511.6 1196000 778790 651290 817900 686470 692930 685230 971320 694890 1068800 67463 1208400 748060 697880 823720 696140 720290 669280 928380 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 746270 1145200 5511.6 1196000 778790 651290 817900 686470 692930 685230 971320 694890 1068800 67463 1208400 748060 697880 823720 696140 720290 669280 928380 2 2 2 2 2 2 2 2 2 2 2 106730000 45021000 61706000 3805 1576 3557 21521;21522;21523;21524 25965;25966;25967 25965 3 EDIYAVEIVGGATR Unmodified 1491.7569 0.75692277 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 0 By MS/MS 2 0 1 1 63.481 63.193 2 0.035737 20987 20211116_3429_TMUAki_TMT10x_P_F2 56.654 28.912 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3806 916 3558 21525 25968 25968 1 EDIYSGGGGGGSR Unmodified 1210.5214 0.52144352 1601 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 0 0 0 0 By MS/MS 2 1 1 1 2 31.471 31.369 2 0.00090739 9602 20211116_3441_TMUAki_TMT10x_S_F3 79.201 71.634 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3807 1601 3559 21526;21527 25969;25970 25970 2 EDKGTGVVTSVPSDSPDDIAALR Unmodified 2328.1445 0.14449857 3064 Q9P2J5;Q9P2J5-2 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 0 1 By MS/MS By MS/MS 3 0 2 1 1 54.171 53.893 3 2.455E-21 17665 20211116_3430_TMUAki_TMT10x_P_F3 157.53 149.91 3762500 7282300 27075 6463700 4680800 6583600 3771800 7630600 7922800 7331200 6497500 3503400 6792100 337030 6653700 4466100 6723100 4001900 7696500 7827800 7172400 6312100 3 3 2 3 3 3 3 3 3 3 3 1162700 2282300 0 1996900 2798300 4152200 2233600 2329500 2399700 2105800 1974700 1082500 2128600 106300 2089600 2668100 4056100 2300300 2453800 2419000 2065800 1918000 1 1 0 1 1 1 1 1 1 1 1 2599800 5000000 27075 4466800 1882400 2431300 1538200 5301100 5523000 5225400 4522900 2420900 4663500 230730 4564100 1798000 2666900 1701600 5242700 5408900 5106500 4394000 2 2 2 2 2 2 2 2 2 2 2 711450000 376250000 335200000 3808 3064 3560 21528;21529 25971;25972;25973 25971 3 EDKLECSEELGDLVK Unmodified 1762.8295 0.82949536 1471 Q00610;Q00610-2;P53675;P53675-2 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 60.258 60.074 3 3.8322E-15 18501 20211116_3431_TMUAki_TMT10x_P_F4 158.98 116.16 103960000 157670000 980710 237640000 116570000 112170000 81610000 65385000 71229000 72474000 105920000 96807000 147420000 9475900 234910000 110940000 120960000 84288000 69052000 74149000 70490000 101110000 14 14 9 14 14 14 14 14 14 14 14 62109000 92210000 744500 138080000 92775000 92150000 60285000 38704000 42369000 43903000 60597000 57835000 86213000 6206500 136940000 88181000 95508000 62294000 42205000 44534000 42664000 57891000 8 8 6 8 8 8 8 8 8 8 8 41856000 65462000 236210 99566000 23800000 20016000 21325000 26680000 28860000 28571000 45325000 38972000 61211000 3269300 97976000 22762000 25448000 21993000 26847000 29614000 27826000 43214000 6 6 3 6 6 6 6 6 6 6 6 8239000000 4806800000 3432200000 3809 1471 3561 21530;21531;21532;21533;21534;21535;21536;21537 25974;25975;25976;25977;25978;25979;25980;25981;25982;25983;25984;25985;25986;25987 25980 14 EDLMGLAIGTHGANIQQAR Oxidation (M) 2009.9953 0.99527233 1532;1149 Q06787-8;Q06787-6;Q06787-5;Q06787;Q06787-7;Q06787-2;Q06787-4;Q06787-9;Q06787-3;Q06787-11;Q06787-10;P51116 FMR1;FXR2 Fragile X mental retardation protein 1;Fragile X mental retardation syndrome-related protein 2 no no 0 0 1 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 1 4 46.531 46.703 3 2.2954E-12 12234 20211116_3444_TMUAki_TMT10x_S_F5 128.11 107.16 3063800 4961400 54517 5620700 2100400 2503900 2248300 4542800 4641700 3992600 4337800 2853100 4632000 291330 5640900 2021000 2788900 2347000 4499400 4606600 3922000 4194000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3063800 4961400 54517 5620700 2100400 2503900 2248300 4542800 4641700 3992600 4337800 2853100 4632000 291330 5640900 2021000 2788900 2347000 4499400 4606600 3922000 4194000 2 2 2 2 2 2 2 2 2 2 2 648960000 0 648960000 3810 1532;1149 3562 21538;21539;21540;21541;21542 25988;25989;25990;25991 25990 1533 4 EDLRLPEGDLGK Unmodified 1340.6936 0.69359423 1404 P63241;P63241-2 EIF5A Eukaryotic translation initiation factor 5A-1 yes no 0 0 0 1 By MS/MS By MS/MS 3.11 1.45 2 1 2 2 2 6 3 49.963 50.002 3 2.0806E-07 14363 20211116_3431_TMUAki_TMT10x_P_F4 130.78 89.077 39964000 59963000 156860 98625000 97470000 69866000 43032000 44834000 59075000 39588000 58807000 37209000 56096000 3922800 97453000 92077000 72386000 46992000 46690000 59387000 38880000 56738000 7 7 4 7 7 7 7 7 7 7 7 24357000 35309000 122920 57596000 88426000 61199000 33583000 25744000 34890000 22708000 34694000 22677000 33030000 2689100 57237000 83394000 61326000 36973000 27873000 35430000 22303000 33474000 4 4 1 4 4 4 4 4 4 4 4 15608000 24654000 33934 41029000 9043400 8667100 9449300 19090000 24185000 16880000 24113000 14532000 23066000 1233700 40216000 8683500 11060000 10020000 18817000 23957000 16577000 23263000 3 3 3 3 3 3 3 3 3 3 3 5183100000 3213900000 1969200000 3811 1404 3563 21543;21544;21545;21546;21547;21548;21549;21550;21551 25992;25993;25994;25995;25996;25997;25998;25999;26000;26001 25997 10 EDLRLPEGDLGKEIEQK Unmodified 1968.0164 0.016384931 1404 P63241;P63241-2 EIF5A Eukaryotic translation initiation factor 5A-1 yes no 0 0 0 2 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 55.248 55.134 4 4.0858E-05 16439 20211116_3431_TMUAki_TMT10x_P_F4 85.937 70.744 27308000 44029000 188070 37883000 51291000 60919000 38211000 41886000 42441000 44530000 42050000 25427000 41061000 2574300 39425000 48850000 60212000 39574000 43626000 42977000 43381000 40576000 3 3 1 3 3 3 3 3 3 3 3 20214000 32923000 188070 28638000 45090000 52690000 32283000 29278000 31159000 30405000 30601000 18822000 30705000 2115300 29878000 42918000 51667000 33381000 30983000 31728000 29649000 29537000 2 2 1 2 2 2 2 2 2 2 2 7094500 11106000 0 9244700 6201400 8228900 5927900 12608000 11282000 14125000 11448000 6604700 10356000 458940 9547400 5931700 8544100 6193000 12643000 11249000 13733000 11039000 1 1 0 1 1 1 1 1 1 1 1 2127700000 1278200000 849500000 3812 1404 3564 21552;21553 26002;26003;26004 26002 3 EDLVVAPAGITLK Unmodified 1324.7602 0.76021723 640 P12268 IMPDH2 Inosine-5'-monophosphate dehydrogenase 2 yes yes 0 0 0 0 By MS/MS 5 0 1 1 68.813 68.836 3 0.10677 21255 20211116_3444_TMUAki_TMT10x_S_F5 32.6 16.375 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3813 640 3565 21554 26005 26005 1 EDLYLKPIQR Unmodified 1273.703 0.7030367 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 1 By MS/MS By MS/MS 5.75 0.968 1 2 3 2 5 3 46.507 46.778 2;3 1.2252E-06 12133 20211116_3434_TMUAki_TMT10x_P_F6 107.1 81.363 47671000 75925000 123530 95754000 98162000 86516000 54278000 67313000 72517000 53557000 70450000 44386000 70920000 4629500 96146000 93017000 88275000 57916000 68997000 72902000 52873000 68024000 9 9 3 9 9 9 9 9 9 9 9 26396000 41154000 28813 50863000 82875000 71182000 38390000 37716000 40336000 29464000 38665000 24577000 38438000 2937400 51507000 78343000 70510000 41327000 39789000 40890000 29117000 37351000 5 5 1 5 5 5 5 5 5 5 5 21275000 34771000 94715 44891000 15287000 15334000 15888000 29597000 32181000 24092000 31785000 19810000 32483000 1692100 44640000 14673000 17765000 16589000 29208000 32012000 23757000 30674000 4 4 2 4 4 4 4 4 4 4 4 3266900000 2109200000 1157700000 3814 653 3566 21555;21556;21557;21558;21559;21560;21561;21562 26006;26007;26008;26009;26010;26011;26012;26013;26014;26015;26016 26011 11 EDMAALEK Unmodified 905.41643 0.41643309 1417;2044 P68363;P68363-2;P68366;P68366-2;Q71U36;Q71U36-2;Q9BQE3 TUBA1B;TUBA4A;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain no no 0 0 0 0 By MS/MS 3 0 1 1 44.827 44.492 2 0.015552 14916 20211116_3441_TMUAki_TMT10x_S_F3 76.827 42.019 1459600 2511900 11672 2588900 1218500 1205400 1564200 1313600 1284400 1241900 1908100 1359100 2344100 128510 2615000 1177700 1315700 1559900 1328000 1341000 1215800 1821300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1459600 2511900 11672 2588900 1218500 1205400 1564200 1313600 1284400 1241900 1908100 1359100 2344100 128510 2615000 1177700 1315700 1559900 1328000 1341000 1215800 1821300 1 1 1 1 1 1 1 1 1 1 1 31415000 0 31415000 3815 1417;2044 3567 21563 26017 26017 1 EDMAALEKDYEEVGVDSVEGEGEEEGEEY Oxidation (M) 3251.2984 0.29835377 1417;2044 P68363;P68363-2;Q71U36;Q71U36-2 TUBA1B;TUBA1A Tubulin alpha-1B chain;Tubulin alpha-1A chain no no 0 0 1 1 By MS/MS By MS/MS 1 0 2 1 1 71.924 71.859 3 0.0010794 22862 20211116_3428_TMUAki_TMT10x_P_F1 58.722 56.639 3402100 8729900 15173 3021500 8322200 24488000 9942400 29462000 24443000 23998000 14031000 3167500 8124600 160570 3806600 8018800 23734000 10449000 29540000 23862000 23663000 13857000 5 5 1 5 5 5 5 5 5 5 5 2067600 5173900 15173 1885800 4087800 16512000 6837800 17103000 14185000 13734000 8388400 1925100 4815500 109820 2374700 3988500 15932000 7019600 17258000 13904000 13552000 8271500 3 3 1 3 3 3 3 3 3 3 3 1334500 3556000 0 1135700 4234500 7976100 3104600 12359000 10258000 10265000 5642100 1242400 3309100 50750 1431900 4030300 7802000 3429600 12282000 9958800 10111000 5585600 2 2 0 2 2 2 2 2 2 2 2 2891200000 2041300000 849950000 3816 1417;2044 3568 21564;21565 26018;26019;26020;26021;26022 26018 1907 5 EDPFVFIPEDDPLFPPIEK Unmodified 2243.1038 0.10380295 1552 Q08J23;Q08J23-2;Q08J23-3 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 0 0 0 0 By matching By MS/MS 1.33 0.471 2 1 1 2 81.604 81.592 3 0.00012042 28871 20211116_3439_TMUAki_TMT10x_S_F1 69.737 66.975 3004600 4874700 0 5280400 3459300 3128400 3964900 2221100 2420500 2749500 3765000 2797500 4550200 247370 5326100 3329100 3299300 3947500 2319800 2577700 2663500 3590300 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3004600 4874700 0 5280400 3459300 3128400 3964900 2221100 2420500 2749500 3765000 2797500 4550200 247370 5326100 3329100 3299300 3947500 2319800 2577700 2663500 3590300 2 2 0 2 2 2 2 2 2 2 2 841500000 410010000 431500000 3817 1552 3569 21566;21567;21568 26023;26024 26023 2 EDQTEYLEER Unmodified 1310.5626 0.56263964 553;544 P07900;P07900-2;Q58FF6;P08238;Q58FF7 HSP90AA1;HSP90AB4P;HSP90AB1;HSP90AB3P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 no no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 36.46 36.43 2 3.3035E-25 10473 20211116_3439_TMUAki_TMT10x_S_F1 262.32 199.77 2307600 3479300 9707.4 4870300 7943500 2293900 2419000 1249300 2077100 1102400 3743100 2148500 3251800 254900 4831700 7476700 2472300 2732000 1318500 2187100 1082700 3559300 2 2 1 2 2 2 2 2 2 2 2 990610 1476800 9707.4 1099700 7240500 1592200 851180 526230 917260 485600 1598800 922430 1376600 178710 1155900 6782500 1567700 1199500 587620 954440 475940 1521200 1 1 1 1 1 1 1 1 1 1 1 1317000 2002600 0 3770500 703050 701730 1567800 723050 1159800 616770 2144300 1226100 1875200 76194 3675800 694270 904650 1532500 730890 1232700 606750 2038100 1 1 0 1 1 1 1 1 1 1 1 928470000 584730000 343740000 3818 544;553 3570 21569;21570;21571 26025;26026;26027 26027 3 EDQTEYLEERR Unmodified 1466.6638 0.66375066 553;544 P07900;P07900-2;P08238;Q58FF7 HSP90AA1;HSP90AB1;HSP90AB3P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 no no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 32.039 31.975 3 4.6197E-24 8690 20211116_3439_TMUAki_TMT10x_S_F1 253.88 223.97 1820100 2681100 4288.5 3995500 5234700 2641700 2277300 1693300 2134400 1395800 2707900 1694500 2506700 171490 3963000 4943200 2753400 2460200 1760600 2198000 1375400 2594500 3 3 1 3 3 3 3 3 3 3 3 1134700 1603300 4288.5 2376200 4455100 2059900 1306800 979510 1233500 802830 1663200 1056300 1498900 117620 2364800 4191200 2093800 1487900 1045100 1273400 791370 1591200 2 2 1 2 2 2 2 2 2 2 2 685410 1077800 0 1619300 779590 581810 970530 713790 900920 592940 1044700 638150 1007800 53867 1598200 752030 659670 972310 715450 924680 584080 1003300 1 1 0 1 1 1 1 1 1 1 1 350870000 212010000 138870000 3819 544;553 3571 21572;21573;21574 26028;26029;26030 26030 3 EDSHPFDLGLYNEAVK Unmodified 1832.8581 0.85809337 927 P35244 RPA3 Replication protein A 14 kDa subunit yes yes 0 0 0 0 By MS/MS By MS/MS 4.29 1.03 2 2 2 1 3 4 61.134 61.071 3 3.5701E-05 18063 20211116_3444_TMUAki_TMT10x_S_F5 84.195 66.278 75364000 135020000 284450 136230000 91628000 120260000 90428000 99517000 100510000 93847000 100660000 70169000 126000000 6267000 138650000 87814000 123030000 92100000 102060000 101810000 91890000 97102000 11 11 5 11 11 11 11 11 11 11 11 34461000 60847000 105880 61495000 50133000 80202000 50850000 44048000 45757000 42518000 46536000 32086000 56779000 3048100 62969000 48086000 79738000 51384000 46564000 46800000 41588000 44868000 5 5 2 5 5 5 5 5 5 5 5 40903000 74177000 178570 74734000 41495000 40057000 39578000 55469000 54748000 51330000 54128000 38083000 69217000 3218900 75683000 39727000 43293000 40715000 55495000 55011000 50302000 52234000 6 6 3 6 6 6 6 6 6 6 6 4417100000 2233500000 2183600000 3820 927 3572 21575;21576;21577;21578;21579;21580;21581 26031;26032;26033;26034;26035;26036;26037;26038;26039;26040;26041 26040 11 EDSQRPGAHLTVK Unmodified 1436.7372 0.73719038 583 P09651;P09651-2;P09651-3;Q32P51 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 0 1 By MS/MS By MS/MS 3.19 1.38 3 2 3 5 3 10 6 28.618 28.568 2;3;4 6.0272E-18 6283 20211116_3431_TMUAki_TMT10x_P_F4 157.03 126.23 27038000 39257000 392370 49162000 23647000 55251000 22362000 17660000 25955000 21721000 25765000 25177000 36668000 2482900 49545000 22661000 55066000 22787000 19974000 26241000 21046000 24860000 14 14 9 14 14 14 13 14 14 14 14 19720000 27359000 265000 36055000 17197000 48652000 15318000 11489000 18311000 15345000 17167000 18363000 25561000 1771700 36356000 16453000 47952000 15654000 13672000 18457000 14828000 16596000 8 8 4 8 8 8 7 8 8 8 8 7317500 11898000 127370 13108000 6450500 6598400 7044500 6170800 7644000 6375800 8597300 6814200 11107000 711140 13189000 6207600 7113900 7133000 6301700 7784100 6218500 8263900 6 6 5 6 6 6 6 6 6 6 6 3873900000 3411400000 462560000 3821 583 3573 21582;21583;21584;21585;21586;21587;21588;21589;21590;21591;21592;21593;21594;21595;21596;21597 26042;26043;26044;26045;26046;26047;26048;26049;26050;26051;26052;26053;26054;26055;26056 26048 15 EDSQRPGAHLTVKK Unmodified 1564.8322 0.8321534 583 P09651;P09651-2;P09651-3;Q32P51 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 0 2 By MS/MS By MS/MS 3.6 2.24 4 1 3 1 1 6 4 29.863 29.915 3;4;5 3.2848E-14 6643 20211116_3433_TMUAki_TMT10x_P_F5 157.54 139.74 11336000 16937000 83375 18680000 14713000 25110000 12165000 8927900 13439000 9083000 11411000 10555000 15810000 1011800 19029000 14045000 24820000 12512000 9898600 13545000 8864600 11070000 12 12 8 12 12 12 12 12 12 12 12 10404000 15272000 79649 17008000 13632000 24114000 11062000 7998300 12027000 8177300 10125000 9687400 14257000 932370 17334000 13008000 23765000 11385000 8950700 12126000 7979000 9826400 10 10 7 10 10 10 10 10 10 10 10 931910 1664300 3725.5 1672000 1080900 995890 1103500 929640 1412100 905730 1285600 867700 1553000 79438 1695100 1037000 1054800 1127700 947820 1418500 885570 1244100 2 2 1 2 2 2 2 2 2 2 2 445120000 403310000 41808000 3822 583 3574 21598;21599;21600;21601;21602;21603;21604;21605;21606;21607 26057;26058;26059;26060;26061;26062;26063;26064;26065;26066;26067;26068 26066 12 EDSVKPGAHLTVK Unmodified 1379.7409 0.74087877 1168;1169 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 34.774 34.825 4 1.0835E-06 7247 20211116_3444_TMUAki_TMT10x_S_F5 118.51 78.847 5313600 7600400 61246 9314700 7464400 9532100 5820100 3268900 4278200 3624600 5562800 4948000 7098400 524740 9384700 7119300 9556500 5941800 3650300 4465400 3525400 5326500 3 3 2 3 3 3 3 3 3 3 3 4774300 6798800 59301 8295400 7067900 9101800 5324700 2866100 3744500 3195600 5021200 4445800 6349600 480220 8369000 6736600 9082400 5443300 3238600 3923900 3107400 4804300 2 2 1 2 2 2 2 2 2 2 2 539330 801560 1945.2 1019400 396420 430260 495420 402820 533650 429040 541580 502190 748750 44526 1015700 382710 474040 498530 411730 541510 417940 522190 1 1 1 1 1 1 1 1 1 1 1 435720000 355170000 80546000 3823 1168;1169 3575 21608;21609;21610 26069;26070;26071 26071 3 EDTEEHHLRDYFEEYGK Unmodified 2195.9396 0.93959117 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 1 By MS/MS By MS/MS 2 1 4 3 2 1 6 4 49.634 49.487 4;5 1.5892E-15 13821 20211116_3428_TMUAki_TMT10x_P_F1 153.18 137.24 27722000 45959000 271610 59286000 31168000 38731000 29309000 29632000 31441000 31266000 33613000 25812000 42935000 2377600 59233000 29840000 40520000 29893000 30636000 31970000 30469000 32358000 11 11 5 11 11 11 11 11 11 11 11 12461000 19847000 17766 25522000 19758000 25672000 15286000 12367000 13378000 13217000 13381000 11602000 18540000 1046500 25638000 18827000 25844000 15680000 13271000 13694000 12873000 12908000 4 4 1 4 4 4 4 4 4 4 4 15261000 26113000 253840 33764000 11409000 13060000 14023000 17265000 18063000 18049000 20231000 14210000 24394000 1331000 33595000 11013000 14676000 14213000 17365000 18276000 17596000 19449000 7 7 4 7 7 7 7 7 7 7 7 3808100000 2953700000 854380000 3824 772 3576 21611;21612;21613;21614;21615;21616;21617;21618;21619;21620 26072;26073;26074;26075;26076;26077;26078;26079;26080;26081;26082 26073 11 EDTEEHHLRDYFEQYGK Unmodified 2194.9556 0.95557559 583 P09651;P09651-2;P09651-3;Q32P51 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 0 1 By MS/MS By MS/MS 2.91 0.668 3 6 2 8 3 48.871 48.751 3;4;5 3.0664E-22 15543 20211116_3430_TMUAki_TMT10x_P_F3 158.45 143.03 40344000 66197000 564220 81560000 56453000 73771000 47925000 45003000 49823000 49008000 47697000 37565000 61826000 3728000 82003000 53926000 74987000 49117000 47327000 50528000 47699000 46077000 15 15 9 15 15 15 15 15 15 15 15 29370000 48786000 466220 58907000 48741000 64065000 38237000 33186000 37082000 36775000 34466000 27348000 45560000 2871300 59457000 46482000 64253000 39299000 35407000 37683000 35769000 33329000 11 11 6 11 11 11 11 11 11 11 11 10973000 17412000 98003 22654000 7711800 9706000 9687100 11817000 12741000 12233000 13231000 10217000 16266000 856650 22547000 7443600 10734000 9817300 11921000 12846000 11931000 12748000 4 4 3 4 4 4 4 4 4 4 4 6235800000 4673300000 1562500000 3825 583 3577 21621;21622;21623;21624;21625;21626;21627;21628;21629;21630;21631 26083;26084;26085;26086;26087;26088;26089;26090;26091;26092;26093;26094;26095;26096;26097;26098 26091 16 EDTEEYNLRDYFEK Unmodified 1849.8006 0.80063808 1168;1169 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 0 1 By MS/MS By MS/MS 2.43 1.18 2 2 1 2 3 4 59.679 59.55 3 4.5396E-09 19468 20211116_3429_TMUAki_TMT10x_P_F2 122.34 89.65 38523000 64942000 342330 80078000 44209000 53562000 40368000 46737000 48275000 43816000 51813000 35871000 60654000 3549900 80227000 42311000 56048000 41393000 47776000 48891000 42913000 49873000 8 8 6 8 8 8 8 8 8 8 8 15885000 26067000 79625 32460000 22056000 32462000 20162000 18785000 20389000 18015000 20734000 14791000 24347000 1477600 32663000 21105000 32763000 20557000 19767000 20745000 17626000 19991000 3 3 3 3 3 3 3 3 3 3 3 22638000 38875000 262710 47618000 22154000 21100000 20206000 27951000 27886000 25801000 31079000 21080000 36307000 2072300 47564000 21206000 23285000 20836000 28009000 28146000 25287000 29882000 5 5 3 5 5 5 5 5 5 5 5 2761400000 1409300000 1352000000 3826 1168;1169 3578 21632;21633;21634;21635;21636;21637;21638 26099;26100;26101;26102;26103;26104;26105;26106;26107 26101 9 EDVEVAESPLR Unmodified 1242.6092 0.6091959 2584 Q99567 NUP88 Nuclear pore complex protein Nup88 yes yes 0 0 0 0 By MS/MS 1 0 1 1 43.666 43.666 2 0.00014389 11448 20211116_3428_TMUAki_TMT10x_P_F1 92.538 71.637 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3827 2584 3579 21639 26108 26108 1 EDVFVHQTAIK Unmodified 1285.6667 0.6666512 1410;699 P67809;Q9Y2T7;P16989;P16989-3;P16989-2 YBX1;YBX2;YBX3 Nuclease-sensitive element-binding protein 1;Y-box-binding protein 2;Y-box-binding protein 3 no no 0 0 0 0 By MS/MS 5 0 1 1 43.479 43.581 3 0.10316 12084 20211116_3433_TMUAki_TMT10x_P_F5 35.774 21.095 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3828 1410;699 3580 21640 26109 26109 1 EDVRPEEIADQELAEALQK Unmodified 2182.0754 0.075356373 1943 Q5TDH0;Q5TDH0-3 DDI2 Protein DDI1 homolog 2 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 73.74 73.691 3 1.2334E-23 25717 20211116_3439_TMUAki_TMT10x_S_F1 162.09 138.61 12738000 22291000 186510 20526000 14988000 19489000 15654000 15075000 15233000 15575000 16784000 11861000 20793000 1192900 21049000 14395000 19819000 15831000 15565000 15571000 15191000 16143000 5 5 4 5 5 5 5 5 5 5 5 5030600 8046400 64048 7443300 5193500 10092000 6087900 5461300 5586200 5739900 6187600 4684500 7505900 479040 7675600 5006200 10014000 6112900 5794700 5726300 5594400 5950300 2 2 2 2 2 2 2 2 2 2 2 7707100 14244000 122460 13082000 9795000 9397300 9566300 9613600 9647100 9835000 10597000 7176400 13287000 713830 13373000 9389100 9805500 9717900 9770200 9844500 9596300 10193000 3 3 2 3 3 3 3 3 3 3 3 1333300000 740130000 593130000 3829 1943 3581 21641;21642 26110;26111;26112;26113;26114 26113 5 EDVTFEDHPLNPNPDSR Unmodified 1980.8813 0.88134801 2968 Q9NVG8;Q9NVG8-2 TBC1D13 TBC1 domain family member 13 yes no 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 42.414 42.469 3 0.00027722 12907 20211116_3430_TMUAki_TMT10x_P_F3 70.96 61.959 335940 485320 167.43 592370 597830 669260 430190 340400 371000 337000 434850 312790 453260 31676 597910 569030 669660 443290 362590 382280 329270 417510 1 1 1 1 1 1 1 1 1 1 1 335940 485320 167.43 592370 597830 669260 430190 340400 371000 337000 434850 312790 453260 31676 597910 569030 669660 443290 362590 382280 329270 417510 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19346000 19346000 0 3830 2968 3582 21643;21644 26115;26116 26116 2 EDWKIIR Unmodified 958.52362 0.52361577 842 P28331;P28331-3;P28331-4;P28331-5;P28331-2 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 28.432 28.419 3 0.075798 6074 20211116_3433_TMUAki_TMT10x_P_F5 44.692 0 378800 598770 12256 485530 525790 659730 377980 356360 378360 314580 429700 352790 558290 44886 505920 501170 654530 391140 376380 386720 308960 412930 1 1 1 1 1 1 1 1 1 1 1 378800 598770 12256 485530 525790 659730 377980 356360 378360 314580 429700 352790 558290 44886 505920 501170 654530 391140 376380 386720 308960 412930 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22483000 22483000 0 3831 842 3583 21645;21646 26117 26117 1 EEAENTLQSFR Unmodified 1322.6103 0.61025853 561 P08670 VIM Vimentin yes yes 0 0 0 0 By MS/MS 3 0 1 1 43.014 43.061 2 2.0749E-14 13148 20211116_3430_TMUAki_TMT10x_P_F3 160.91 121.66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3832 561 3584 21647 26118 26118 1 EEAENTLQSFRQDVDNASLAR Unmodified 2392.1255 0.12549446 561 P08670 VIM Vimentin yes yes 0 0 0 1 By MS/MS 2 0 1 1 61.386 61.115 3 0.006777 20133 20211116_3429_TMUAki_TMT10x_P_F2 50.426 33.546 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3833 561 3585 21648 26119 26119 1 EEAGGGISEEEAAQYDR Unmodified 1809.7653 0.7653152 3076 Q9UBE0;Q9UBE0-3;Q9UBE0-2 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 1 0 3 2 1 38.59 38.552 2;3 4.8145E-108 9431 20211116_3428_TMUAki_TMT10x_P_F1 365.6 334.17 2229500 3134100 37365 5629300 5489100 2667000 2347200 1346500 1690200 1240400 3077500 2075800 2933800 223160 5522300 5183700 2870000 2524800 1432500 1797400 1215800 2925800 4 4 3 4 4 4 4 4 4 4 4 1249100 1671500 3261.5 3227000 4939700 2080400 1610900 594160 779760 527720 1623600 1162800 1565500 116140 3165100 4650200 2156700 1782300 677120 859590 518130 1540100 2 2 1 2 2 2 2 2 2 2 2 980340 1462700 34104 2402300 549340 586520 736290 752360 910390 712710 1453900 913050 1368300 107020 2357200 533500 713240 742460 755390 937830 697700 1385700 2 2 2 2 2 2 2 2 2 2 2 384780000 273820000 110960000 3834 3076 3586 21649;21650;21651 26120;26121;26122;26123 26121 4 EEAIEHNYGGHDDDLSVR Unmodified 2054.893 0.89297533 2387 Q93009;Q93009-3 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes no 0 0 0 0 By matching By MS/MS 1 0 2 1 1 34.332 34.327 4 5.6949E-05 9691 20211116_3439_TMUAki_TMT10x_S_F1 79.635 70.693 184320 296310 1630.1 368000 197320 161880 166880 218000 246400 186640 279850 171630 276760 16982 367280 188530 178880 173320 217870 248380 183570 268930 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 184320 296310 1630.1 368000 197320 161880 166880 218000 246400 186640 279850 171630 276760 16982 367280 188530 178880 173320 217870 248380 183570 268930 1 1 1 1 1 1 1 1 1 1 1 40140000 20167000 19973000 3835 2387 3587 21652;21653 26124 26124 1 EEAQAEIEQYR Unmodified 1364.6208 0.62082322 324 O75348 ATP6V1G1 V-type proton ATPase subunit G 1 yes yes 0 0 0 0 By MS/MS 1 0 1 1 39.418 39.305 2 1.327E-21 11703 20211116_3439_TMUAki_TMT10x_S_F1 212.28 187.5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3836 324 3588 21654 26125 26125 1 EEAYELVR Unmodified 1007.4924 0.49237523 2714 Q9BXJ9;Q9BXJ9-4 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes no 0 0 0 0 By MS/MS 3 0 1 1 40.837 40.891 2 0.020795 12252 20211116_3430_TMUAki_TMT10x_P_F3 71.491 42.342 508010 809560 11298 873480 1296200 995110 616930 451850 599850 432310 689930 473090 755650 63686 888390 1226500 994040 660770 486240 614180 423030 662760 1 1 1 1 1 1 1 1 1 1 1 508010 809560 11298 873480 1296200 995110 616930 451850 599850 432310 689930 473090 755650 63686 888390 1226500 994040 660770 486240 614180 423030 662760 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 48031000 48031000 0 3837 2714 3589 21655 26126 26126 1 EEDFRRPSEEDFR Unmodified 1710.7598 0.75977631 2161 Q8IXT5 RBM12B RNA-binding protein 12B yes yes 0 0 0 2 By MS/MS 2 0 1 1 34.352 34.13 4 0.00029298 9125 20211116_3429_TMUAki_TMT10x_P_F2 86.944 69.279 333280 488150 5434.7 622100 966900 811160 453580 490410 540210 412390 541470 310360 456000 41571 628010 914530 807490 489600 512470 545820 405980 522290 1 1 1 1 1 1 1 1 1 1 1 333280 488150 5434.7 622100 966900 811160 453580 490410 540210 412390 541470 310360 456000 41571 628010 914530 807490 489600 512470 545820 405980 522290 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28402000 28402000 0 3838 2161 3590 21656 26127 26127 1 EEECHFYAGGQVYPGEASR Unmodified 2184.9171 0.91708159 1605 Q13162 PRDX4 Peroxiredoxin-4 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 40.951 40.665 3 5.9098E-41 11794 20211116_3429_TMUAki_TMT10x_P_F2 204.71 193.43 582340 999260 8340.9 1194900 1108300 1120800 766830 752430 862330 680860 853910 542250 933150 58903 1204000 1054400 1138000 798640 781460 872800 667920 824000 3 3 1 3 3 3 3 3 3 3 3 345850 605390 8340.9 748860 883240 936390 581470 470150 561050 461410 523140 322050 565430 39594 756640 839530 931890 604960 501280 570320 451000 505820 2 2 1 2 2 2 2 2 2 2 2 236490 393870 0 446000 225100 184360 185360 282280 301280 219450 330770 220200 367720 19309 447400 214830 206150 193680 280180 302480 216910 318170 1 1 0 1 1 1 1 1 1 1 1 186570000 136080000 50491000 3839 1605 3591 21657;21658 26128;26129;26130 26128 3 EEEEFNTGPLSVLTQSVK Unmodified 2005.9844 0.9844161 1354 P62316;P62316-2 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes no 0 0 0 0 By MS/MS By matching 2.75 0.829 2 1 1 3 1 77.869 77.848 3 3.7048E-12 25839 20211116_3431_TMUAki_TMT10x_P_F4 129.36 116.38 6392300 9820000 56997 9871300 5766000 11456000 7261700 6327700 6513500 6562300 7410900 5951900 9163300 525520 10090000 5566600 11457000 7264500 6699400 6691000 6399400 7121200 2 2 1 2 2 2 2 2 2 2 2 6392300 9820000 56997 9871300 5766000 11456000 7261700 6327700 6513500 6562300 7410900 5951900 9163300 525520 10090000 5566600 11457000 7264500 6699400 6691000 6399400 7121200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1675500000 1326800000 348710000 3840 1354 3592 21659;21660;21661;21662 26131;26132;26133 26133 3 EEEIAALVIDNGSGMCK Acetyl (Protein N-term);Oxidation (M) 1892.8496 0.84957888 1406 P63261 ACTG1 Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed yes yes 1 0 1 0 By MS/MS By MS/MS 2.25 0.736 10 38 22 3 52 21 42.294 42.213 2;3 4.0263E-17 26206 20211116_3428_TMUAki_TMT10x_P_F1 77.358 58.115 152030000 256390000 1508900 203320000 166890000 253480000 196370000 160820000 182970000 186500000 197830000 141550000 239040000 11165000 211920000 160690000 253060000 197230000 168960000 187250000 181080000 190380000 62 62 22 62 62 62 62 62 62 62 62 78804000 127290000 950490 103260000 66859000 143370000 91545000 76359000 87716000 92494000 98686000 73371000 118690000 5906500 107640000 64700000 142070000 91449000 81501000 89793000 89669000 94859000 42 42 15 42 42 42 42 42 42 42 42 73228000 129100000 558370 100060000 100030000 110120000 104820000 84461000 95250000 94003000 99146000 68178000 120350000 5258600 104280000 95991000 110980000 105780000 87455000 97458000 91415000 95522000 20 20 7 20 20 20 20 20 20 20 20 101740000000 54523000000 47214000000 3841 1406 3593 21663;21664;21665;21666;21667;21668;21669;21670;21671;21672;21673;21674;21675;21676;21677;21678;21679;21680;21681;21682;21683;21684;21685;21686;21687;21688;21689;21690;21691;21692;21693;21694;21695;21696;21697;21698;21699;21700;21701;21702;21703;21704;21705;21706;21707;21708;21709;21710;21711;21712;21713;21714;21715;21716;21717;21718;21719;21720;21721;21722;21723;21724;21725;21726;21727;21728;21729;21730;21731;21732;21733;21734;21735 26134;26135;26136;26137;26138;26139;26140;26141;26142;26143;26144;26145;26146;26147;26148;26149;26150;26151;26152;26153;26154;26155;26156;26157;26158;26159;26160;26161;26162;26163;26164;26165;26166;26167;26168;26169;26170;26171;26172;26173;26174;26175;26176;26177;26178;26179;26180;26181;26182;26183;26184;26185;26186;26187;26188;26189;26190;26191;26192;26193;26194;26195;26196;26197;26198 26135 1890 65 EEEIAALVIDNGSGMCK Acetyl (Protein N-term) 1876.8547 0.85466426 1406 P63261 ACTG1 Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed yes yes 1 0 0 0 By MS/MS By MS/MS 2.23 1.05 11 19 6 6 1 13 30 63.852 63.82 2;3 2.1868E-109 29601 20211116_3441_TMUAki_TMT10x_S_F3 257.42 232.64 374950000 577970000 1284800 611290000 362470000 315280000 431280000 88432000 61798000 135450000 356890000 349090000 539440000 27486000 616830000 349070000 334340000 422430000 102770000 89508000 130350000 335150000 51 51 16 51 51 51 51 51 51 51 51 191940000 281720000 46573 296410000 153200000 186050000 202000000 39044000 25109000 63516000 174370000 178700000 262930000 13165000 299700000 147980000 193040000 196870000 47849000 38581000 61024000 163590000 12 12 1 12 12 12 12 12 12 12 12 183010000 296250000 1238200 314870000 209270000 129220000 229280000 49387000 36689000 71931000 182520000 170400000 276500000 14322000 317130000 201090000 141300000 225560000 54918000 50927000 69323000 171550000 39 39 15 39 39 39 39 39 39 39 39 101810000000 50523000000 51288000000 3842 1406 3593 21736;21737;21738;21739;21740;21741;21742;21743;21744;21745;21746;21747;21748;21749;21750;21751;21752;21753;21754;21755;21756;21757;21758;21759;21760;21761;21762;21763;21764;21765;21766;21767;21768;21769;21770;21771;21772;21773;21774;21775;21776;21777;21778 26199;26200;26201;26202;26203;26204;26205;26206;26207;26208;26209;26210;26211;26212;26213;26214;26215;26216;26217;26218;26219;26220;26221;26222;26223;26224;26225;26226;26227;26228;26229;26230;26231;26232;26233;26234;26235;26236;26237;26238;26239;26240;26241;26242;26243;26244;26245;26246;26247;26248;26249;26250;26251;26252;26253;26254;26255;26256;26257 26251 59 EEFASTCPDDEEIELAYEQVAK Unmodified 2572.1163 0.11629449 80 O00299 CLIC1 Chloride intracellular channel protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 6 3 3 9 3 57.1 57.063 2;3;4 1.1458E-19 25231 20211116_3428_TMUAki_TMT10x_P_F1 148.24 145.2 29859000 47943000 290190 48792000 33426000 42593000 38533000 21693000 21145000 25469000 35198000 27800000 44739000 2404800 49623000 32171000 43304000 38280000 23223000 22771000 24718000 33519000 11 11 5 11 11 11 11 11 11 11 11 18305000 29704000 119880 28392000 18010000 30275000 22830000 13054000 13242000 16361000 20982000 17042000 27712000 1290100 29086000 17375000 30339000 22609000 14240000 14166000 15842000 20001000 9 9 4 9 9 9 9 9 9 9 9 11554000 18239000 170310 20399000 15417000 12318000 15703000 8638600 7902700 9108000 14216000 10758000 17027000 1114700 20537000 14796000 12965000 15671000 8982900 8605000 8876000 13519000 2 2 1 2 2 2 2 2 2 2 2 12006000000 6869000000 5136600000 3843 80 3594 21779;21780;21781;21782;21783;21784;21785;21786;21787;21788;21789;21790 26258;26259;26260;26261;26262;26263;26264;26265;26266;26267;26268;26269;26270 26258 13 EEFTAFLHPEEFEHMK Oxidation (M) 2035.8986 0.89857798 1787 Q15293;Q15293-2 RCN1 Reticulocalbin-1 yes no 0 0 1 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 62.54 62.332 4 0.0096294 19902 20211116_3442_TMUAki_TMT10x_S_F4 52.372 36.065 13900000 24674000 136840 24456000 23074000 30519000 17320000 17803000 20591000 16971000 20440000 12943000 23023000 1337300 25056000 21984000 30431000 17970000 18718000 20799000 16609000 19723000 4 4 2 4 4 4 4 4 4 4 4 10860000 19242000 49147 19175000 20240000 27714000 14408000 14344000 16141000 13275000 16225000 10112000 17955000 1006400 19694000 19259000 27406000 14973000 15227000 16347000 13009000 15649000 3 3 1 3 3 3 3 3 3 3 3 3039900 5431900 87692 5281500 2834800 2805100 2911300 3459300 4450100 3696000 4215500 2831100 5068000 330880 5361600 2725300 3025100 2996700 3491300 4451600 3599900 4073800 1 1 1 1 1 1 1 1 1 1 1 2268000000 1517400000 750640000 3844 1787 3595 21791;21792;21793;21794;21795 26271;26272;26273;26274 26274 2402 4 EEFTAFLHPEEYDYMK Unmodified 2047.8873 0.88734459 252 O43852;O43852-3;O43852-4;O43852-2;O43852-10;O43852-6;O43852-15 CALU Calumenin yes no 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 75.151 75.01 3 8.4039E-16 25735 20211116_3429_TMUAki_TMT10x_P_F2 157.38 139.52 5243300 8186800 99115 9168900 5147300 7817900 6322400 4094700 3538500 4642200 5450200 4882800 7642800 525740 9264300 4971000 7964000 6265500 4367500 3789500 4511300 5198400 2 2 2 2 2 2 2 2 2 2 2 5243300 8186800 99115 9168900 5147300 7817900 6322400 4094700 3538500 4642200 5450200 4882800 7642800 525740 9264300 4971000 7964000 6265500 4367500 3789500 4511300 5198400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 574390000 574390000 0 3845 252 3596 21796;21797 26275;26276 26275 2 EEGDLGPVYGFQWR Unmodified 1651.7631 0.76307078 493 P04818;P04818-2 TYMS Thymidylate synthase yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 70.517 70.267 2 9.5025E-14 22670 20211116_3431_TMUAki_TMT10x_P_F4 136.5 119.17 2427100 4064300 0 3859700 2448900 3656100 2641900 1559300 1499900 1760800 2287700 2259800 3791700 199570 3948900 2352800 3690100 2634300 1697300 1603800 1711300 2182500 1 1 0 1 1 1 1 1 1 1 1 2427100 4064300 0 3859700 2448900 3656100 2641900 1559300 1499900 1760800 2287700 2259800 3791700 199570 3948900 2352800 3690100 2634300 1697300 1603800 1711300 2182500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 299230000 299230000 0 3846 493 3597 21798;21799;21800 26277;26278;26279 26278 3 EEGRYDEEVEVYR Unmodified 1671.7376 0.73764389 1927 Q5SNT2;Q5SNT2-2 TMEM201 Transmembrane protein 201 yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 36.723 36.626 3 8.3281E-26 8604 20211116_3428_TMUAki_TMT10x_P_F1 232.53 199.34 2689100 4147700 0 5021900 5749600 4755700 2965900 3448100 3990100 2943000 3902600 2503600 3873500 161040 5057500 5441000 4831900 3185700 3556600 4011400 2895100 3767400 4 4 0 4 4 4 4 4 4 4 4 1785500 2911400 0 3472200 4992500 4088100 2327200 2293300 2655400 1889100 2602500 1662200 2718800 161040 3511800 4717900 4086300 2510100 2410200 2685100 1861600 2512200 3 3 0 3 3 3 3 3 3 3 3 903560 1236300 0 1549800 757170 667660 638710 1154700 1334800 1053900 1300100 841310 1154800 0 1545700 723030 745530 675610 1146400 1326200 1033500 1255200 1 1 0 1 1 1 1 1 1 1 1 324280000 237690000 86586000 3847 1927 3598 21801;21802;21803 26280;26281;26282;26283 26280 4 EEHGGLIR Unmodified 909.46683 0.46682918 812 P26368;P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 0 0 0 0 By MS/MS By matching 2.5 0.5 1 1 1 1 26.983 26.718 3 0.09862 6190 20211116_3429_TMUAki_TMT10x_P_F2 29.162 19.024 112420 222320 0 161210 196410 199660 121060 135410 123240 136410 137090 104660 207220 8445.3 169350 186300 199580 126800 140950 125770 133180 131810 1 1 0 1 1 1 1 1 1 1 1 112420 222320 0 161210 196410 199660 121060 135410 123240 136410 137090 104660 207220 8445.3 169350 186300 199580 126800 140950 125770 133180 131810 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2787500 1700700 1086900 3848 812 3599 21804;21805 26284 26284 1 EEHILNQLCINK Unmodified 1509.761 0.76096229 3381 yes yes 0 0 0 0 By MS/MS 7 0 1 1 71.915 72.122 3 0.053238 24944 20211116_3446_TMUAki_TMT10x_S_F7 38.634 8.8269 + 3220000 6209200 11012 5525800 3755900 3405700 3761300 3074800 3014900 2969900 3750600 2998200 5791300 284730 5653800 3602200 3592800 3791800 3139800 3125900 2904900 3595300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3220000 6209200 11012 5525800 3755900 3405700 3761300 3074800 3014900 2969900 3750600 2998200 5791300 284730 5653800 3602200 3592800 3791800 3139800 3125900 2904900 3595300 1 1 1 1 1 1 1 1 1 1 1 743920000 0 743920000 3849 3381 3600 21806 26285 26285 1 EEIIPVAAEYDK Unmodified 1375.6871 0.68711187 623 P11310;P11310-2 ACADM Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS 3 0 2 2 60.44 60.174 3 0.0010545 20251 20211116_3430_TMUAki_TMT10x_P_F3 70.622 54.048 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3850 623 3601 21807;21808 26286;26287 26287 2 EEIQDEEDDDDYVEEGEEEEEEEEGGLRGEK Unmodified 3657.4246 0.42455316 2666 Q9BTT0;Q9BTT0-3;Q9BTT0-2 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 59.05 58.901 3;4 2.8617E-82 19640 20211116_3439_TMUAki_TMT10x_S_F1 239.15 238.36 11594000 17869000 0 22351000 10653000 13996000 10506000 7879800 11152000 11422000 13729000 10793000 16690000 692760 22360000 10194000 14636000 10684000 8426400 11408000 11009000 13164000 4 4 0 4 4 4 4 4 4 4 4 6956100 10066000 0 13165000 7617900 10604000 7864500 3829900 6143200 6611400 8005700 6475000 9404400 363690 13174000 7296200 10808000 7911100 4319100 6391100 6342400 7665200 2 2 0 2 2 2 2 2 2 2 2 4638200 7802700 0 9185200 3035000 3392800 2641200 4049900 5008500 4810600 5723600 4318400 7285900 329070 9186200 2898000 3828400 2773000 4107300 5017000 4666900 5499200 2 2 0 2 2 2 2 2 2 2 2 5129700000 2096000000 3033700000 3851 2666 3602 21809;21810 26288;26289;26290;26291 26290 4 EEIQDEEDDDDYVEEGEEEEEEEEGGLRGEKR Unmodified 3813.5257 0.52566418 2666 Q9BTT0;Q9BTT0-3;Q9BTT0-2 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E yes no 0 0 0 2 By MS/MS By MS/MS 1 0 2 1 1 53.53 53.385 4 2.063E-114 17528 20211116_3439_TMUAki_TMT10x_S_F1 280.47 276.73 1187700 2365100 3426.1 1713200 2563200 7213400 2907300 10102000 5912300 5662300 4082100 1105600 2204500 89836 1876100 2464600 7074200 3024000 9992300 5818300 5713000 3994500 4 4 2 4 4 4 4 4 4 4 4 847280 1684900 0 1164600 2056000 6556200 2613600 8100400 4676100 4360300 3135200 788660 1570200 56083 1305500 1983300 6381200 2685800 8046100 4612200 4412600 3072100 2 2 0 2 2 2 2 2 2 2 2 340420 680260 3426.1 548620 507260 657200 293720 2001500 1236200 1302000 946940 316990 634260 33753 570610 481220 693020 338270 1946200 1206100 1300400 922430 2 2 2 2 2 2 2 2 2 2 2 867470000 412360000 455110000 3852 2666 3603 21811;21812 26292;26293;26294;26295 26294 4 EELGLIEQAYDNPHEALSR Unmodified 2183.0495 0.049475973 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 62.451 62.25 3 1.9332E-24 20607 20211116_3429_TMUAki_TMT10x_P_F2 175.91 158.63 14998000 25624000 130910 22489000 15605000 23635000 17429000 19846000 19708000 19341000 19902000 13965000 23898000 1304800 23181000 15012000 23922000 17654000 20354000 19957000 18910000 19193000 7 7 5 7 7 7 7 7 7 7 7 6837300 10513000 63142 9798400 6350100 13684000 7783400 8393100 8214200 8348100 8657700 6366100 9806700 555530 10105000 6124600 13581000 7833500 8799200 8353400 8155000 8338000 3 3 2 3 3 3 3 3 3 3 3 8160400 15111000 67772 12691000 9254900 9951300 9645800 11453000 11494000 10992000 11244000 7598600 14091000 749310 13077000 8887600 10340000 9820900 11555000 11603000 10755000 10855000 4 4 3 4 4 4 4 4 4 4 4 2305500000 1277500000 1028000000 3853 1997 3604 21813;21814;21815;21816;21817 26296;26297;26298;26299;26300;26301;26302;26303 26298 8 EELHQDCLVLATAK Unmodified 1625.8083 0.80830641 2287 Q8TEQ6 GEMIN5 Gem-associated protein 5 yes yes 0 0 0 0 By MS/MS 4 0 1 1 61.885 61.747 3 0.091021 19709 20211116_3442_TMUAki_TMT10x_S_F4 28.64 10.502 9208200 15148000 259720 15056000 9276100 8917200 9387700 10041000 8591600 9880800 11510000 8575700 14134000 1006400 15274000 8912900 9488200 9491900 10148000 8878800 9656800 11013000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9208200 15148000 259720 15056000 9276100 8917200 9387700 10041000 8591600 9880800 11510000 8575700 14134000 1006400 15274000 8912900 9488200 9491900 10148000 8878800 9656800 11013000 1 1 1 1 1 1 1 1 1 1 1 868980000 0 868980000 3854 2287 3605 21818 26304 26304 1 EELIAELQDCEGLIVR Unmodified 1885.9455 0.94552817 201 O43175 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 0 By matching By MS/MS 1 0 2 1 1 78.593 78.571 3 0.00062513 27656 20211116_3439_TMUAki_TMT10x_S_F1 64.537 51.352 3045900 4636200 128450 4580400 3487800 3073700 3685600 2699600 2526800 2945700 3429700 2837000 4325900 378430 4654200 3357100 3215800 3692200 2771000 2653300 2866800 3280500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3045900 4636200 128450 4580400 3487800 3073700 3685600 2699600 2526800 2945700 3429700 2837000 4325900 378430 4654200 3357100 3215800 3692200 2771000 2653300 2866800 3280500 1 1 1 1 1 1 1 1 1 1 1 670460000 331110000 339350000 3855 201 3606 21819;21820 26305 26305 1 EELNAISGPNEFAEFYNR Unmodified 2098.9596 0.95959833 1572 Q12874 SF3A3 Splicing factor 3A subunit 3 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.707 1 2 1 1 3 73.196 72.972 2;3 1.1801E-105 26495 20211116_3441_TMUAki_TMT10x_S_F3 332.06 271.63 12439000 21886000 25541 19657000 18027000 15241000 16269000 12794000 13069000 13440000 16030000 11582000 20414000 1037700 20145000 17236000 15744000 16496000 13151000 13541000 13100000 15372000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12439000 21886000 25541 19657000 18027000 15241000 16269000 12794000 13069000 13440000 16030000 11582000 20414000 1037700 20145000 17236000 15744000 16496000 13151000 13541000 13100000 15372000 3 3 1 3 3 3 3 3 3 3 3 647830000 0 647830000 3856 1572 3607 21821;21822;21823;21824 26306;26307;26308;26309;26310 26308 5 EELRELNDR Unmodified 1172.5786 0.57856447 748;1505 P20700;Q03252 LMNB1;LMNB2 Lamin-B1;Lamin-B2 no no 0 0 0 1 By MS/MS 1 0 1 1 32.036 32.066 3 0.0002303 8748 20211116_3439_TMUAki_TMT10x_S_F1 122.77 65.563 553300 926270 2031.6 871250 523320 465930 625550 382740 403830 410560 660600 515190 864110 47346 886640 504480 497790 622310 394180 429640 399830 629310 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 553300 926270 2031.6 871250 523320 465930 625550 382740 403830 410560 660600 515190 864110 47346 886640 504480 497790 622310 394180 429640 399830 629310 1 1 1 1 1 1 1 1 1 1 1 9856100 0 9856100 3857 748;1505 3608 21825 26311 26311 1 EELTLEGIR Unmodified 1058.5608 0.56078914 1277 P60842;P60842-2 EIF4A1 Eukaryotic initiation factor 4A-I yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 50.94 50.681 2 1.6718E-06 17403 20211116_3441_TMUAki_TMT10x_S_F3 167.23 124.83 3804500 5631300 0 7087100 8445400 8600400 4596600 4252200 4165100 3896800 5104400 3542100 5260000 350990 7149800 7999200 8570500 4850400 4532100 4289400 3820400 4894900 1 1 0 1 1 1 1 1 1 1 1 3804500 5631300 0 7087100 8445400 8600400 4596600 4252200 4165100 3896800 5104400 3542100 5260000 350990 7149800 7999200 8570500 4850400 4532100 4289400 3820400 4894900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 398160000 398160000 0 3858 1277 3609 21826;21827;21828;21829 26312;26313;26314;26315 26315 4 EEPFFPPPEEFVFIHAVPVEER Unmodified 2640.29 0.2900406 1874 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 0 0 By MS/MS 1 0 1 1 79.089 79.089 3 3.9976E-08 25914 20211116_3428_TMUAki_TMT10x_P_F1 99.441 89.783 3060800 4883200 56740 4793700 2999900 6317200 3415100 3700900 3358400 4252800 3912300 2850300 4556200 305790 4919500 2890300 6282800 3440600 3911400 3438700 4130800 3756900 2 2 2 2 2 2 2 2 2 2 2 3060800 4883200 56740 4793700 2999900 6317200 3415100 3700900 3358400 4252800 3912300 2850300 4556200 305790 4919500 2890300 6282800 3440600 3911400 3438700 4130800 3756900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 585890000 585890000 0 3859 1874 3610 21830 26316;26317 26316 2 EEQHQLAVTAYLK Unmodified 1528.7886 0.78855725 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 1 3 48.433 48.599 3 3.9298E-06 12958 20211116_3444_TMUAki_TMT10x_S_F5 102.5 81.842 12110000 18790000 22987 25500000 12974000 12552000 10712000 12831000 13289000 11747000 15419000 11276000 17558000 994390 25346000 12382000 13592000 11063000 12999000 13482000 11517000 14808000 4 4 2 4 4 4 4 4 4 4 4 3521900 5134600 0 7173000 5629400 6348500 3722600 4081100 4252400 3783500 4476300 3279100 4798700 303960 7161300 5348700 6467400 3892100 4254900 4310800 3707400 4311200 1 1 0 1 1 1 1 1 1 1 1 8588500 13655000 22987 18327000 7344800 6203100 6989100 8749500 9036500 7963400 10943000 7996700 12759000 690430 18185000 7033300 7124400 7171300 8743900 9171200 7809900 10497000 3 3 2 3 3 3 3 3 3 3 3 1154600000 333700000 820860000 3860 1684 3611 21831;21832;21833;21834 26318;26319;26320;26321 26320 4 EESGKPGAHVTVK Unmodified 1337.6939 0.69392858 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 1 By MS/MS By MS/MS 3.43 1.4 1 1 1 2 2 6 1 30.32 30.242 3;4 1.4199E-14 6462 20211116_3431_TMUAki_TMT10x_P_F4 167.21 102.91 10838000 16656000 79839 16682000 12149000 22210000 8869400 6622500 8850800 8738600 9923800 10092000 15542000 985290 17100000 11571000 21935000 9167500 7583300 9043100 8447400 9539900 9 9 7 9 9 9 9 9 9 9 9 10637000 16333000 79839 16383000 11968000 22009000 8659900 6438900 8631500 8534200 9672700 9904300 15240000 970900 16794000 11396000 21724000 8956200 7395200 8819300 8248600 9298700 8 8 7 8 8 8 8 8 8 8 8 201390 323100 0 299400 181680 201170 209470 183590 219310 204390 251120 187490 301400 14384 305640 174770 210600 211330 188170 223800 198760 241260 1 1 0 1 1 1 1 1 1 1 1 1455100000 1391500000 63638000 3861 772 3612 21835;21836;21837;21838;21839;21840;21841 26322;26323;26324;26325;26326;26327;26328;26329 26323 8 EESQIPVDEVFFHR Unmodified 1730.8264 0.82639932 1508 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 0 0 0 0 By MS/MS 4 0 1 1 59.808 59.697 3 0.067172 18836 20211116_3442_TMUAki_TMT10x_S_F4 38.995 31.084 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3862 1508 3613 21842 26330 26330 1 EESREPAPASPAPAGVEIR Unmodified 1961.9807 0.98066813 1692 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 yes yes 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 34.72 34.602 3 1.2391E-50 9325 20211116_3429_TMUAki_TMT10x_P_F2 227.66 202.07 837590 1305800 5945.4 1708000 2110700 1699800 1065200 1240700 1411600 967170 1348900 779900 1219900 89675 1713900 1997700 1721800 1145900 1276400 1418700 955860 1303200 3 3 2 3 3 3 3 3 3 3 3 457320 677710 2073.3 886350 1802300 1381400 743390 717600 823480 563680 726400 425800 633150 55547 896890 1701500 1361800 811900 758500 830800 556860 703740 2 2 1 2 2 2 2 2 2 2 2 380270 628060 3872.1 821640 308330 318390 321800 523070 588130 403500 622500 354100 586770 34128 817010 296210 360000 333950 517910 587880 399000 599440 1 1 1 1 1 1 1 1 1 1 1 427500000 292960000 134540000 3863 1692 3614 21843;21844;21845;21846 26331;26332;26333 26332 3 EETPGQRPAVTETHQLAELNEK Unmodified 2476.2194 0.21939485 3216 Q9UQ35;Q9UQ35-2;Q9UQ35-3 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 1.12 1 1 1 1 2 2 38.947 38.857 4 3.7479E-05 12548 20211116_3441_TMUAki_TMT10x_S_F3 76.614 63.159 2221900 3759100 48155 4374200 4119700 4773400 2657900 3094500 3482800 2633800 2972900 2069100 3509900 255670 4424900 3916300 4800500 2798000 3217200 3489000 2591300 2883600 3 3 3 3 3 3 3 3 3 3 3 1532400 2482500 31922 2950600 3726700 4314600 2340600 2210400 2459500 1939200 2071400 1427100 2318200 187530 2997400 3540400 4264000 2450300 2345400 2483100 1905100 2010200 2 2 2 2 2 2 2 2 2 2 2 689440 1276600 16233 1423600 393010 458780 317320 884110 1023400 694670 901450 642060 1191700 68136 1427500 375920 536440 347680 871770 1005900 686260 873370 1 1 1 1 1 1 1 1 1 1 1 576590000 437590000 139000000 3864 3216 3615 21847;21848;21849;21850 26334;26335;26336 26336 3 EEVKLEAHIR Unmodified 1222.667 0.66698555 86;3353 O00425;O00425-2;Q9Y6M1;Q9Y6M1-5;Q9Y6M1-6;Q9Y6M1-3;Q9Y6M1-4;Q9Y6M1-1 IGF2BP3;IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 3;Insulin-like growth factor 2 mRNA-binding protein 2 no no 0 0 0 1 By MS/MS By MS/MS 3.18 1.19 2 4 4 1 5 6 33.488 33.474 3;4 8.3231E-07 8212 20211116_3442_TMUAki_TMT10x_S_F4 155.26 134.49 7311900 11451000 53488 11320000 10628000 12310000 8263600 7917800 8171700 8011300 9183300 6808200 10685000 669760 11572000 10132000 12381000 8502900 8274800 8353200 7820400 8827400 12 12 9 12 12 12 12 12 12 12 12 5402400 8379900 44954 8225700 8522700 10393000 5870700 5876100 6069900 5937200 6691600 5030200 7818800 506700 8434900 8106200 10353000 6099700 6204200 6188400 5796100 6435900 6 6 5 6 6 6 6 6 6 6 6 1909600 3071300 8533.6 3093800 2104900 1916800 2392900 2041800 2101800 2074100 2491700 1778000 2866000 163070 3137000 2025600 2028100 2403200 2070600 2164800 2024300 2391500 6 6 4 6 6 6 6 6 6 6 6 836820000 586510000 250320000 3865 86;3353 3616 21851;21852;21853;21854;21855;21856;21857;21858;21859;21860;21861 26337;26338;26339;26340;26341;26342;26343;26344;26345;26346;26347;26348 26346 12 EEVKLETHIR Unmodified 1252.6776 0.67755023 3032 Q9NZI8;Q9NZI8-2 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 3.31 1.36 2 3 3 4 4 8 8 32.291 32.271 3;4 1.4642E-08 7536 20211116_3431_TMUAki_TMT10x_P_F4 168.22 140.02 21491000 32560000 134010 34300000 23132000 29221000 20205000 16866000 16998000 18637000 23785000 20008000 30389000 1625400 34792000 22095000 29804000 20548000 17825000 17674000 18129000 22735000 17 17 11 17 17 17 17 17 17 17 17 17441000 26429000 94601 27166000 19003000 25185000 15670000 13312000 13591000 14724000 19115000 16238000 24664000 1308500 27632000 18127000 25513000 16004000 14176000 14113000 14322000 18268000 9 9 6 9 9 9 9 9 9 9 9 4049500 6131300 39404 7133800 4129400 4035300 4534800 3554500 3407400 3913700 4670800 3770300 5724900 316920 7160500 3968400 4291200 4543800 3649000 3560600 3807500 4466600 8 8 5 8 8 8 8 8 8 8 8 2418800000 1770400000 648390000 3866 3032 3617 21862;21863;21864;21865;21866;21867;21868;21869;21870;21871;21872;21873;21874;21875;21876;21877 26349;26350;26351;26352;26353;26354;26355;26356;26357;26358;26359;26360;26361;26362;26363;26364;26365;26366;26367 26355 19 EEVVLLTHGDSVDK Unmodified 1539.7781 0.77805214 1128 P49915;P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 49.379 49.163 3 7.0828E-05 15689 20211116_3430_TMUAki_TMT10x_P_F3 83.692 69.534 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3867 1128 3618 21878;21879 26368;26369 26368 2 EEYQPATPGLGMFVEVK Unmodified 1893.9183 0.91825079 2696 Q9BVK6 TMED9 Transmembrane emp24 domain-containing protein 9 yes yes 0 0 0 0 By MS/MS 7 0 1 1 10.332 10.263 3 0.11068 2876 20211116_3446_TMUAki_TMT10x_S_F7 17.281 0 103750 184530 2193.6 174850 113260 99466 97186 107720 118780 107730 140260 96619 172150 10779 177930 108330 106160 100090 109110 120660 105220 134630 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 103750 184530 2193.6 174850 113260 99466 97186 107720 118780 107730 140260 96619 172150 10779 177930 108330 106160 100090 109110 120660 105220 134630 1 1 1 1 1 1 1 1 1 1 1 1273700 0 1273700 3868 2696 3619 21880 26370 26370 1 EFADSLGIPFLETSAK Unmodified 1723.8669 0.86686715 2781;1367 P62820;P62820-2;Q9H0U4;Q92928 RAB1A;RAB1B;RAB1C Ras-related protein Rab-1A;Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C no no 0 0 0 0 By MS/MS By MS/MS 5.6 1.94 5 4 3 10 5 11 9 27 20 65.879 65.876 2;3 2.2837E-42 25903 20211116_3445_TMUAki_TMT10x_S_F6 222.99 204.68 182130000 300230000 282010 270120000 209190000 273790000 221200000 169730000 169700000 180630000 220480000 169570000 280030000 13547000 277750000 200750000 276360000 222150000 178150000 176690000 175960000 211120000 45 45 13 45 45 45 45 45 45 45 45 106880000 170820000 180910 154780000 99617000 181310000 119750000 97892000 98088000 103180000 125950000 99509000 159330000 7848800 159430000 95965000 181200000 119740000 103900000 101720000 100550000 120640000 30 30 10 30 30 30 30 30 30 30 30 75254000 129410000 101100 115350000 109570000 92483000 101450000 71837000 71608000 77452000 94528000 70061000 120700000 5698200 118330000 104790000 95162000 102410000 74249000 74968000 75412000 90478000 15 15 3 15 15 15 15 15 15 15 15 38490000000 17928000000 20562000000 3869 1367;2781 3620 21881;21882;21883;21884;21885;21886;21887;21888;21889;21890;21891;21892;21893;21894;21895;21896;21897;21898;21899;21900;21901;21902;21903;21904;21905;21906;21907;21908;21909;21910;21911;21912;21913;21914;21915;21916;21917;21918;21919;21920;21921;21922;21923;21924;21925;21926;21927 26371;26372;26373;26374;26375;26376;26377;26378;26379;26380;26381;26382;26383;26384;26385;26386;26387;26388;26389;26390;26391;26392;26393;26394;26395;26396;26397;26398;26399;26400;26401;26402;26403;26404;26405;26406;26407;26408;26409;26410;26411;26412;26413;26414;26415;26416;26417;26418;26419;26420;26421;26422;26423;26424;26425;26426;26427;26428;26429 26425 59 EFAGEDTSDLFLEER Unmodified 1756.7792 0.77917435 153 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 1.2 0.4 4 1 2 3 67.598 67.44 2;3 1.2817E-60 21134 20211116_3428_TMUAki_TMT10x_P_F1 299.42 284.27 14939000 23658000 11891 21865000 14475000 17758000 16267000 14164000 14041000 13990000 17077000 13907000 22068000 834890 22371000 13898000 18263000 16338000 14577000 14489000 13670000 16380000 4 4 1 4 4 4 4 4 4 4 4 4665400 6526400 0 6746500 4722700 7529800 5214100 3905300 3995600 4295800 5067500 4343200 6090600 282860 6878700 4533900 7541100 5225500 4165200 4156200 4179500 4855300 1 1 0 1 1 1 1 1 1 1 1 10274000 17131000 11891 15118000 9752100 10228000 11053000 10259000 10045000 9693900 12010000 9563600 15978000 552020 15492000 9364500 10722000 11112000 10412000 10333000 9490900 11525000 3 3 1 3 3 3 3 3 3 3 3 2907900000 1279600000 1628300000 3870 153 3621 21928;21929;21930;21931;21932 26430;26431;26432;26433;26434 26430 5 EFANFTFPR Unmodified 1127.54 0.53999412 2515 Q96L92;Q96L92-3;Q96L92-2 SNX27 Sorting nexin-27 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 62.921 63.266 2 2.8449E-05 19526 20211116_3436_TMUAki_TMT10x_P_F8 134.25 101.35 10723000 18097000 18780 18100000 14389000 19685000 12989000 12914000 11881000 12205000 14271000 9984400 16887000 953450 18488000 13762000 19804000 13215000 13451000 12221000 11950000 13693000 2 2 1 2 2 2 2 2 2 2 2 7360600 12068000 0 12522000 10330000 15899000 9332100 8301800 7476800 8014600 9360600 6853400 11263000 647430 12793000 9879400 15818000 9460700 8815500 7754400 7839300 8971500 1 1 0 1 1 1 1 1 1 1 1 3362500 6028700 18780 5577400 4058700 3786200 3657200 4612600 4404600 4190900 4910900 3130900 5623700 306030 5694900 3882700 3986200 3753800 4635500 4466100 4110400 4721700 1 1 1 1 1 1 1 1 1 1 1 1069200000 617600000 451580000 3871 2515 3622 21933;21934;21935;21936 26435;26436;26437;26438 26436 4 EFAPVYPIMVQLLQK Unmodified 1774.9692 0.96916415 3205 Q9UP83;Q9UP83-2 COG5 Conserved oligomeric Golgi complex subunit 5 yes no 0 0 0 0 By MS/MS By MS/MS 3.4 1.02 1 2 1 1 3 2 81.431 81.417 3 0.00018433 28813 20211116_3430_TMUAki_TMT10x_P_F3 80.746 38.875 2637100 4036100 0 4018100 2841900 3789800 3078400 1967100 1956500 2070900 2916200 2454900 3766100 159590 4097000 2726900 3833900 3075400 2095100 2073500 2018200 2783500 3 3 0 3 3 3 3 3 3 3 3 2173400 3261700 0 3270300 2226000 3274400 2415700 1609300 1625100 1666200 2341800 2023200 3043500 120990 3335700 2135200 3298000 2416000 1722000 1713300 1624900 2236900 2 2 0 2 2 2 2 2 2 2 2 463630 774470 0 747810 615920 515470 662640 357810 331400 404680 574380 431670 722570 38604 761300 591620 535920 659450 373150 360260 393300 546560 1 1 0 1 1 1 1 1 1 1 1 937510000 638320000 299190000 3872 3205 3623 21937;21938;21939;21940;21941 26439;26440;26441 26439 3 EFASHLQQLQDALNELTEEHSK Unmodified 2566.23 0.22995953 1741 Q14980;Q14980-2;Q14980-4;Q14980-3;Q14980-5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By matching By MS/MS 7 0 2 1 1 77.64 77.708 4 2.1171E-07 27306 20211116_3446_TMUAki_TMT10x_S_F7 90.556 81.272 6321400 10161000 0 17283000 0 0 7493100 2758900 1723500 2928000 6121100 5885900 9508300 0 16870000 180250 0 7029700 2670900 2161900 2852700 5768700 1 1 0 1 0 0 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6321400 10161000 0 17283000 0 0 7493100 2758900 1723500 2928000 6121100 5885900 9508300 0 16870000 180250 0 7029700 2670900 2161900 2852700 5768700 1 1 0 1 0 0 1 1 1 1 1 1538200000 658100000 880090000 3873 1741 3624 21942;21943 26442 26442 1 EFCENLSADCR Unmodified 1399.5496 0.54964888 869 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 0 0 By MS/MS 3 0 1 1 38.805 38.848 2 0.00074113 11491 20211116_3430_TMUAki_TMT10x_P_F3 82.803 60.022 135220 207210 0 318360 506270 340100 221890 149910 178140 135730 212490 125890 193770 14547 317260 478160 340860 238580 161600 184360 133150 203910 1 1 0 1 1 1 1 1 1 1 1 135220 207210 0 318360 506270 340100 221890 149910 178140 135730 212490 125890 193770 14547 317260 478160 340860 238580 161600 184360 133150 203910 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5089300 5089300 0 3874 869 3625 21944 26443 26443 1 EFDEDSEDRLVNEK Unmodified 1723.7537 0.75368788 3118 Q9UHD8-5;Q9UHD8;Q9UHD8-2;Q9UHD8-7;Q9UHD8-3;Q9UHD8-4;Q9UHD8-9;Q9UHD8-8 SEPT9 Septin-9 yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 45.017 44.942 3 7.5961E-14 11969 20211116_3428_TMUAki_TMT10x_P_F1 146.58 123.11 5366600 8048200 30434 14807000 15483000 9362000 5676300 5776000 8400300 5072700 8762400 4996900 7535100 586100 14547000 14599000 9792700 6354800 6032600 8439500 4983300 8441500 3 3 1 3 3 3 3 3 3 3 3 2700500 4018300 30434 7803400 13701000 7884300 4028500 2812900 4311100 2444700 4408500 2514700 3763700 406320 7694600 12895000 7913000 4600700 3104900 4376900 2402800 4249700 1 1 1 1 1 1 1 1 1 1 1 2666100 4029900 0 7003600 1782300 1477700 1647900 2963100 4089200 2628000 4353900 2482200 3771400 179780 6852200 1703700 1879600 1754100 2927700 4062700 2580500 4191900 2 2 0 2 2 2 2 2 2 2 2 506080000 364500000 141580000 3875 3118 3626 21945;21946;21947 26444;26445;26446 26444 3 EFDELNPSAQR Unmodified 1304.5997 0.59969384 697 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 43.958 43.835 2 1.2437E-18 13148 20211116_3429_TMUAki_TMT10x_P_F2 224.68 198.61 1664500 2368300 1632.8 3508800 6022800 4655700 2479700 2513400 2977200 1892700 2578100 1549800 2214200 199000 3516100 5685900 4624000 2715900 2645000 2992800 1874100 2499300 2 2 1 2 2 2 2 2 2 2 2 1664500 2368300 1632.8 3508800 6022800 4655700 2479700 2513400 2977200 1892700 2578100 1549800 2214200 199000 3516100 5685900 4624000 2715900 2645000 2992800 1874100 2499300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 220790000 220790000 0 3876 697 3627 21948;21949;21950;21951;21952 26447;26448;26449;26450;26451 26448 5 EFDPTITDASLSLPSRR Unmodified 1903.964 0.96395543 1521 Q05682;Q05682-3;Q05682-4;Q05682-6;Q05682-2;Q05682-5 CALD1 Caldesmon yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 57.67 57.806 3 3.4668E-30 17827 20211116_3433_TMUAki_TMT10x_P_F5 167.18 143.7 5912200 10099000 0 8307800 9018500 10949000 6876700 11782000 10550000 10984000 9750700 5504600 9416400 501230 8641300 8591400 11010000 7201000 11913000 10543000 10761000 9430900 2 2 0 2 2 2 2 2 2 2 2 2624900 4409900 0 3878100 4305100 6670800 3851900 4636500 4234000 4208100 3846200 2443900 4112900 221780 4035600 4115300 6577800 3942700 4803900 4276900 4127500 3722300 1 1 0 1 1 1 1 1 1 1 1 3287300 5688700 0 4429700 4713300 4277900 3024700 7145500 6315700 6776300 5904500 3060700 5303500 279450 4605700 4476100 4431800 3258300 7109300 6266500 6633300 5708600 1 1 0 1 1 1 1 1 1 1 1 987150000 450780000 536370000 3877 1521 3628 21953;21954;21955 26452;26453;26454 26453 3 EFDVSFR Unmodified 898.41848 0.418482 2951 Q9NUD5 ZCCHC3 Zinc finger CCHC domain-containing protein 3 yes yes 0 0 0 0 By MS/MS 3 0 1 1 52.09 51.722 2 0.020668 17840 20211116_3441_TMUAki_TMT10x_S_F3 87.284 33.574 2759500 4221600 0 4597800 2927700 2358200 2288600 3617200 3439600 3456600 3704500 2569300 3940600 223750 4630500 2790700 2568800 2390400 3609300 3458200 3382500 3565400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2759500 4221600 0 4597800 2927700 2358200 2288600 3617200 3439600 3456600 3704500 2569300 3940600 223750 4630500 2790700 2568800 2390400 3609300 3458200 3382500 3565400 1 1 0 1 1 1 1 1 1 1 1 119240000 0 119240000 3878 2951 3629 21956 26455 26455 1 EFEDPRDAPPPTR Unmodified 1525.7161 0.71612058 560 P08621;P08621-2;P08621-3 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 34.087 33.933 3 5.5328E-06 10546 20211116_3441_TMUAki_TMT10x_S_F3 102.73 87.936 1667700 2572600 0 2950300 3587000 2803200 1963700 2331100 2530600 1885500 2556300 1552400 2401900 111930 2980900 3395100 2854200 2094300 2380600 2550600 1859800 2465200 3 3 0 3 3 3 3 3 3 3 3 853450 1310800 0 1428600 2763400 2128400 1137800 1206000 1346200 967860 1322000 794350 1223500 60200 1459600 2606400 2104400 1245600 1265600 1359600 955080 1276000 2 2 0 2 2 2 2 2 2 2 2 814240 1261800 0 1521700 823590 674810 825850 1125100 1184400 917590 1234300 758010 1178400 51735 1521300 788720 749810 848670 1115000 1191000 904720 1189200 1 1 0 1 1 1 1 1 1 1 1 235240000 142550000 92681000 3879 560 3630 21957;21958;21959;21960 26456;26457;26458;26459 26459 4 EFEDRGFVQVDDGRK Unmodified 1795.8489 0.84892567 1218 P54136;P54136-2 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 2 By MS/MS 2.5 0.5 1 1 2 40.865 40.75 4 0.0014633 13374 20211116_3441_TMUAki_TMT10x_S_F3 71.143 55.02 857610 1437300 28279 1770500 1065400 582810 706050 940390 947820 797500 1007900 798730 1342400 100370 1764900 1014200 675020 742450 933800 955800 784760 970460 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 857610 1437300 28279 1770500 1065400 582810 706050 940390 947820 797500 1007900 798730 1342400 100370 1764900 1014200 675020 742450 933800 955800 784760 970460 1 1 1 1 1 1 1 1 1 1 1 120020000 0 120020000 3880 1218 3631 21961;21962 26460 26460 1 EFEEDLTGIDDRK Unmodified 1565.7209 0.72093119 575 P09455-3;P09455;P09455-2 RBP1 Retinol-binding protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 52.131 51.849 3 4.1538E-22 14760 20211116_3428_TMUAki_TMT10x_P_F1 168.61 135.2 1466700 2541500 0 3730700 1085800 1085100 1165900 1846300 1866500 1559200 2284400 1365300 2375900 79702 3682400 1040800 1285700 1200100 1830200 1883000 1534700 2190800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1466700 2541500 0 3730700 1085800 1085100 1165900 1846300 1866500 1559200 2284400 1365300 2375900 79702 3682400 1040800 1285700 1200100 1830200 1883000 1534700 2190800 1 1 0 1 1 1 1 1 1 1 1 158610000 0 158610000 3881 575 3632 21963;21964 26461;26462 26461 2 EFEEESKQPGVSEQQR Unmodified 1905.8704 0.87044898 384 O94776 MTA2 Metastasis-associated protein MTA2 yes yes 0 0 0 1 By MS/MS By matching 2.5 0.5 1 1 1 1 34.006 33.775 3 1.2393E-21 9034 20211116_3429_TMUAki_TMT10x_P_F2 175.39 157.29 315940 505480 9376 519210 1484700 685310 413850 290870 445010 249280 469230 294240 471720 51300 531190 1397200 679040 476740 314400 452220 245170 451900 1 1 1 1 1 1 1 1 1 1 1 315940 505480 9376 519210 1484700 685310 413850 290870 445010 249280 469230 294240 471720 51300 531190 1397200 679040 476740 314400 452220 245170 451900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35556000 21334000 14222000 3882 384 3633 21965;21966 26463 26463 1 EFENPEVPREDQQQQHQQR Unmodified 2421.1058 0.10576207 255 O60216 RAD21 Double-strand-break repair protein rad21 homolog yes yes 0 0 0 1 By MS/MS By matching 2.5 0.5 1 1 1 1 31.158 30.918 4 5.7156E-51 7898 20211116_3429_TMUAki_TMT10x_P_F2 234.11 215.04 547590 749750 14893 1176500 2598900 1796800 797850 566200 829570 554590 832500 509950 701190 84574 1179400 2447400 1764500 904450 637430 842660 542120 802990 2 2 1 2 2 2 2 2 2 2 2 547590 749750 14893 1176500 2598900 1796800 797850 566200 829570 554590 832500 509950 701190 84574 1179400 2447400 1764500 904450 637430 842660 542120 802990 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 351340000 322950000 28391000 3883 255 3634 21967;21968 26464;26465 26464 2 EFEPLLNWMK Oxidation (M) 1321.6377 0.63765925 672 P14625 HSP90B1 Endoplasmin yes yes 0 0 1 0 By MS/MS By MS/MS 5.85 0.948 1 4 4 4 6 7 75.825 75.866 2;3 8.157E-05 24467 20211116_3445_TMUAki_TMT10x_S_F6 117.3 89.095 30395000 53310000 235560 46670000 43411000 62164000 46553000 28230000 26382000 32344000 40027000 28302000 49719000 2785400 48312000 41709000 61611000 46432000 30538000 28206000 31419000 38190000 10 10 5 10 10 10 10 10 10 10 10 23050000 40417000 187810 34704000 32866000 52352000 36667000 21082000 19664000 24143000 30482000 21462000 37692000 2120000 36071000 31613000 51541000 36468000 23104000 21133000 23453000 29070000 7 7 3 7 7 7 7 7 7 7 7 7345500 12892000 47746 11966000 10546000 9812600 9886600 7148400 6717700 8201100 9545000 6839500 12026000 665370 12241000 10096000 10069000 9964700 7433900 7073100 7966200 9120200 3 3 2 3 3 3 3 3 3 3 3 3604900000 2470000000 1134800000 3884 672 3635 21969;21970;21971;21972;21973;21974;21975;21976;21977;21978;21979;21980;21981 26466;26467;26468;26469;26470;26471;26472;26473;26474;26475;26476;26477;26478;26479 26476 742 14 EFEPLLNWMK Unmodified 1305.6427 0.64274463 672 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 79.373 79.394 2 7.7555E-09 25483 20211116_3434_TMUAki_TMT10x_P_F6 143.7 119.85 25455000 43881000 213850 42778000 39587000 24815000 34710000 10515000 9812500 13926000 29734000 23703000 40941000 2507600 43450000 37848000 26067000 34692000 11515000 11779000 13460000 28066000 4 4 4 4 4 4 4 4 4 4 4 7153200 11029000 14709 10666000 9228700 8995800 9825600 2614100 2495300 3144800 7061200 6660400 10290000 635820 10881000 8864800 9123900 9708400 2995800 3021300 3049500 6670300 1 1 1 1 1 1 1 1 1 1 1 18302000 32852000 199140 32112000 30358000 15819000 24884000 7901000 7317200 10781000 22672000 17042000 30652000 1871800 32569000 28983000 16943000 24983000 8519100 8757600 10411000 21396000 3 3 3 3 3 3 3 3 3 3 3 3056100000 861880000 2194200000 3885 672 3635 21982;21983;21984;21985 26480;26481;26482;26483;26484 26480 5 EFESVLVDAFSHVAR Unmodified 1704.8471 0.84713476 2905 Q9NQG5 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B yes yes 0 0 0 0 By MS/MS By MS/MS 4 1.41 2 2 2 2 2 5 5 78.454 78.424 3 7.0412E-24 26450 20211116_3442_TMUAki_TMT10x_S_F4 183 157.67 21547000 36927000 226580 32292000 27123000 31600000 26665000 22415000 22265000 23585000 26700000 20063000 34439000 1979400 33260000 26003000 32028000 26935000 23289000 23001000 22986000 25619000 9 9 5 9 9 9 9 9 9 9 9 8696300 14276000 124910 12863000 8700200 15904000 10283000 8370200 8650700 9082700 10332000 8098000 13316000 837450 13268000 8389500 15845000 10298000 8911800 8931700 8841200 9914800 4 4 4 4 4 4 4 4 4 4 4 12851000 22651000 101670 19429000 18423000 15697000 16381000 14045000 13615000 14502000 16368000 11965000 21123000 1141900 19992000 17613000 16184000 16637000 14377000 14069000 14145000 15704000 5 5 1 5 5 5 5 5 5 5 5 8076600000 3715800000 4360800000 3886 2905 3636 21986;21987;21988;21989;21990;21991;21992;21993;21994;21995 26485;26486;26487;26488;26489;26490;26491;26492;26493;26494 26493 10 EFETIERDER Unmodified 1322.6103 0.61025853 1558 Q10570 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 0 0 0 1 By MS/MS 1 0 1 1 34.061 34.05 3 0.086117 9588 20211116_3439_TMUAki_TMT10x_S_F1 38.867 14.532 343870 533220 0 619010 309840 255580 317670 460320 477320 320910 508110 320130 497870 22827 620000 296950 287390 326760 453510 479690 319160 489200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 343870 533220 0 619010 309840 255580 317670 460320 477320 320910 508110 320130 497870 22827 620000 296950 287390 326760 453510 479690 319160 489200 1 1 0 1 1 1 1 1 1 1 1 13723000 0 13723000 3887 1558 3637 21996 26495 26495 1 EFEVYGPIKR Unmodified 1236.6503 0.65027285 560 P08621;P08621-2;P08621-3 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 47.053 47.2 3 0.0012833 13545 20211116_3433_TMUAki_TMT10x_P_F5 82.029 4.7044 9787300 15998000 118800 19463000 24194000 24630000 14284000 15446000 15560000 13390000 14357000 9113800 14940000 1123900 19688000 22957000 24566000 15046000 16106000 15731000 13162000 13887000 2 2 2 2 2 2 2 2 2 2 2 9787300 15998000 118800 19463000 24194000 24630000 14284000 15446000 15560000 13390000 14357000 9113800 14940000 1123900 19688000 22957000 24566000 15046000 16106000 15731000 13162000 13887000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1091900000 1091900000 0 3888 560 3638 21997;21998 26496 26496 1 EFFNGKEPSR Unmodified 1209.5778 0.57783619 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 1 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 37.45 37.49 3 0.00067892 9834 20211116_3433_TMUAki_TMT10x_P_F5 92.112 70.542 4063900 6142100 39461 8279600 14066000 9105000 5281700 7413000 9263100 5584500 7301500 3784000 5739200 495560 8307900 13267000 9186600 5940000 7567700 9179800 5529500 7104200 4 4 3 4 4 4 4 4 4 4 4 2894700 4257300 28972 5508500 13068000 8112600 4192700 5199700 6211400 3827700 4959600 2695400 3977200 391250 5570100 12307000 8038500 4779300 5392600 6186300 3794900 4823100 3 3 2 3 3 3 3 3 3 3 3 1169100 1884800 10488 2771100 997960 992400 1089000 2213300 3051800 1756800 2341900 1088700 1762100 104310 2737800 959810 1148100 1160700 2175100 2993600 1734600 2281100 1 1 1 1 1 1 1 1 1 1 1 589740000 456530000 133220000 3889 614 3639 21999;22000;22001 26497;26498;26499;26500 26497 4 EFFVGLSK Unmodified 925.49092 0.49091866 382;451 O94760;O94760-2;O95865 DDAH1;DDAH2 N(G),N(G)-dimethylarginine dimethylaminohydrolase 1;N(G),N(G)-dimethylarginine dimethylaminohydrolase 2 no no 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 64.883 65.223 2 0.0011946 21504 20211116_3435_TMUAki_TMT10x_P_F7 126.41 79.986 25791000 42760000 232950 44009000 33748000 42545000 30036000 33619000 35973000 35620000 35629000 24016000 39905000 2432600 44786000 32278000 43232000 30845000 34691000 36325000 34706000 34380000 3 3 2 3 3 3 3 3 3 3 3 11661000 17611000 189770 19653000 18700000 26766000 15386000 15075000 16463000 15884000 15922000 10859000 16440000 1242300 20011000 17859000 26566000 15813000 15942000 16682000 15479000 15377000 1 1 1 1 1 1 1 1 1 1 1 14130000 25150000 43175 24356000 15048000 15779000 14650000 18543000 19511000 19736000 19706000 13156000 23465000 1190300 24775000 14419000 16666000 15031000 18750000 19643000 19227000 19004000 2 2 1 2 2 2 2 2 2 2 2 1716300000 752090000 964190000 3890 382;451 3640 22002;22003;22004;22005;22006 26501;26502;26503;26504;26505 26502 5 EFGGGHIKDEVFGTVK Unmodified 1718.8628 0.86278482 1565 Q12792;Q12792-4;Q12792-3 TWF1 Twinfilin-1 yes no 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 53.983 54.286 4 0.025012 17593 20211116_3446_TMUAki_TMT10x_S_F7 44.391 26.252 7162800 11930000 21487 13737000 8822500 9241300 7057200 8301700 8082500 8046900 9529400 6669400 11139000 628620 13819000 8415800 9670600 7282500 8480400 8229000 7869600 9147900 2 2 1 2 2 2 2 2 2 2 2 2653700 4177900 21487 4950000 4752500 5616000 3592800 3075500 3077600 2928800 3544300 2471000 3901300 269430 5005200 4529100 5623000 3689000 3250700 3170100 2866500 3404600 1 1 1 1 1 1 1 1 1 1 1 4509100 7752500 0 8786800 4069900 3625300 3464400 5226200 5004800 5118100 5985100 4198400 7237800 359200 8813700 3886700 4047600 3593500 5229600 5058900 5003100 5743200 1 1 0 1 1 1 1 1 1 1 1 790810000 570460000 220360000 3891 1565 3641 22007;22008 26506;26507 26507 2 EFGPVVIDYGK Unmodified 1222.6234 0.6233894 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 65.434 65.56 2 3.6213E-11 19843 20211116_3434_TMUAki_TMT10x_P_F6 129.85 88.549 4361300 6507900 0 7288700 6015700 7987500 5369700 4446500 4581400 4668500 4900700 4059800 6075500 261420 7390900 5743900 8014500 5456100 4706300 4706600 4550400 4717700 1 1 0 1 1 1 1 1 1 1 1 4361300 6507900 0 7288700 6015700 7987500 5369700 4446500 4581400 4668500 4900700 4059800 6075500 261420 7390900 5743900 8014500 5456100 4706300 4706600 4550400 4717700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 348400000 348400000 0 3892 1695 3642 22009;22010 26508;26509 26509 2 EFHGLGDCIIK Unmodified 1287.6282 0.6281572 638 P12235 SLC25A4 ADP/ATP translocase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 51.568 51.759 3 0.0052863 15329 20211116_3433_TMUAki_TMT10x_P_F5 66.267 40.608 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3893 638 3643 22011;22012 26510;26511 26510 2 EFHGNIIK Unmodified 956.50797 0.50796571 2366 Q92804;Q92804-2 TAF15 TATA-binding protein-associated factor 2N yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 36.776 36.831 3 0.00015244 8150 20211116_3444_TMUAki_TMT10x_S_F5 141.23 103.7 1373900 2196300 14327 2246500 2482300 2329200 1675300 1825700 1872700 1616100 1888000 1279300 2049600 141180 2289500 2360600 2356400 1747600 1875400 1897100 1587000 1820800 2 2 1 2 2 2 2 2 2 2 2 750930 1160500 14327 1199300 1744400 1697800 958410 979290 1015200 890360 1006100 699290 1083000 89523 1228200 1653700 1682700 1015000 1029300 1030000 873230 970790 1 1 1 1 1 1 1 1 1 1 1 622930 1035900 0 1047200 737920 631390 716840 846460 857490 725770 881910 579990 966630 51653 1061300 706920 673700 732580 846150 867060 713800 849990 1 1 0 1 1 1 1 1 1 1 1 330100000 235650000 94451000 3894 2366 3644 22013;22014;22015 26512;26513 26513 2 EFHLNESGDPSSK Unmodified 1445.6423 0.64228694 1478 Q01105;Q01105-2;Q01105-3;Q01105-4;P0DME0 SET;SETSIP Protein SET;Protein SETSIP yes no 0 0 0 0 By MS/MS By MS/MS 3.78 1.13 2 1 3 3 4 5 35.788 35.767 3 1.3015E-12 12096 20211116_3441_TMUAki_TMT10x_S_F3 158.52 122.78 4442300 6797800 97187 9452500 13137000 8910800 5436100 5291600 7033400 4894100 6941600 4136900 6353000 569850 9447500 12408000 9029800 5966200 5550900 7082200 4796200 6699200 8 8 6 8 8 8 8 8 8 8 8 3059300 4418900 45077 6285600 11662000 7514700 3906000 3441100 4760400 3241600 4593000 2848800 4130300 405890 6298900 10989000 7488100 4394000 3698300 4799500 3174200 4435800 3 3 2 3 3 3 3 3 3 3 3 1383000 2378800 52110 3166900 1475800 1396100 1530100 1850500 2273100 1652500 2348700 1288100 2222700 163960 3148600 1419500 1541700 1572200 1852600 2282600 1622000 2263300 5 5 4 5 5 5 5 5 5 5 5 789420000 564530000 224890000 3895 1478 3645 22016;22017;22018;22019;22020;22021;22022;22023;22024 26514;26515;26516;26517;26518;26519;26520;26521;26522;26523 26519 10 EFHQAGKPIGLCCIAPVLAAK Unmodified 2279.1919 0.19186365 2 P0DPI2;A0A0B4J2D5 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 62.131 61.825 4 1.1246E-13 20919 20211116_3430_TMUAki_TMT10x_P_F3 125.88 105.63 27202000 44702000 956360 44974000 30065000 32527000 30384000 28254000 21532000 28504000 31822000 25335000 41713000 3186600 45675000 28894000 33809000 30530000 28950000 22657000 27829000 30379000 4 4 4 4 4 4 4 4 4 4 4 8503700 14637000 425200 14738000 9541400 14517000 9722000 9265900 6268900 9643900 10183000 7920900 13658000 1115800 15025000 9179100 14684000 9745100 9697200 6667600 9403200 9702200 1 1 1 1 1 1 1 1 1 1 1 18699000 30065000 531150 30235000 20524000 18011000 20662000 18988000 15263000 18860000 21639000 17414000 28055000 2070800 30650000 19715000 19124000 20784000 19252000 15990000 18425000 20677000 3 3 3 3 3 3 3 3 3 3 3 7569100000 3893200000 3675900000 3896 2 3646 22025;22026;22027;22028 26524;26525;26526;26527 26524 4 EFHVLPYR Unmodified 1059.5502 0.55016488 1932 Q5SWX8;Q5SWX8-4;Q5SWX8-2 ODR4 Protein odr-4 homolog yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 41.939 42.32 3 0.0010054 10720 20211116_3445_TMUAki_TMT10x_S_F6 106.36 88.492 250760 433730 2534.9 485370 264720 247000 243660 399250 453800 348930 381720 233500 404910 23348 487950 253450 269750 254770 396740 449910 342850 370460 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 250760 433730 2534.9 485370 264720 247000 243660 399250 453800 348930 381720 233500 404910 23348 487950 253450 269750 254770 396740 449910 342850 370460 1 1 1 1 1 1 1 1 1 1 1 58678000 0 58678000 3897 1932 3647 22029;22030 26528 26528 1 EFKEEGEEIPR Unmodified 1361.6463 0.64630969 3160 Q9UKV3;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 0 0 0 1 By MS/MS By MS/MS 2.33 1.37 2 2 1 1 2 4 38.122 38.062 3 0.00058994 10802 20211116_3429_TMUAki_TMT10x_P_F2 81.904 68.476 5650100 9803000 69071 12406000 11283000 8867100 6270600 10432000 11862000 7946600 10205000 5261200 9157000 499870 12419000 10695000 9286600 6795700 10453000 11764000 7863400 9895500 8 8 5 8 8 8 8 8 8 8 8 1675700 2507100 53730 3353900 7025300 4804200 2791300 2906800 3465000 2043300 3015500 1560700 2342500 263930 3383400 6633000 4762100 3073600 3025300 3479600 2031200 2922800 2 2 2 2 2 2 2 2 2 2 2 3974400 7295900 15340 9051900 4257800 4062900 3479300 7525000 8397200 5903300 7189300 3700500 6814400 235940 9035800 4062400 4524500 3722100 7427700 8284600 5832200 6972700 6 6 3 6 6 6 6 6 6 6 6 1835200000 241560000 1593700000 3898 3160 3648 22031;22032;22033;22034;22035;22036 26529;26530;26531;26532;26533;26534 26530 6 EFLHAQEEVK Unmodified 1228.6088 0.60880197 1032 P43686 PSMC4 26S protease regulatory subunit 6B yes yes 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 39.373 39.272 3 2.4127E-05 12776 20211116_3441_TMUAki_TMT10x_S_F3 129.82 114.85 652950 981530 4735.9 1230800 491780 440940 622610 547580 639090 515490 711720 608000 916810 56291 1226200 475120 500320 625210 550400 652020 504780 684320 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 652950 981530 4735.9 1230800 491780 440940 622610 547580 639090 515490 711720 608000 916810 56291 1226200 475120 500320 625210 550400 652020 504780 684320 1 1 1 1 1 1 1 1 1 1 1 50675000 0 50675000 3899 1032 3649 22037;22038 26535 26535 1 EFLHAQEEVKR Unmodified 1384.7099 0.709913 1032 P43686 PSMC4 26S protease regulatory subunit 6B yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 33.877 33.929 4 3.6237E-11 8016 20211116_3431_TMUAki_TMT10x_P_F4 160.52 121.52 3096800 4886100 3990.6 4759900 5467300 6007100 3593800 4086800 3746100 3596900 4304800 2883400 4558800 282110 4883500 5194700 5999600 3748000 4237500 3824100 3533100 4135400 5 5 3 5 5 5 5 5 5 5 5 2304500 3623400 0 3304300 4574900 5326900 2755400 3346100 2991100 2886900 3218900 2145700 3379800 211300 3423700 4340100 5257400 2897400 3488300 3040700 2838400 3098100 2 2 0 2 2 2 2 2 2 2 2 792280 1262800 3990.6 1455600 892420 680240 838350 740770 754980 709980 1085900 737720 1179000 70807 1459800 854580 742170 850620 749190 783450 694670 1037300 3 3 3 3 3 3 3 3 3 3 3 648440000 627630000 20809000 3900 1032 3650 22039;22040;22041 26536;26537;26538;26539;26540 26536 5 EFLLSLDDSVDETEAVKR Unmodified 2065.0215 0.021529888 2715 Q9BXP5;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3 SRRT Serrate RNA effector molecule homolog yes no 0 0 0 1 By MS/MS By MS/MS 2 0.894 2 1 2 2 3 71.469 71.293 3 1.0798E-79 22959 20211116_3440_TMUAki_TMT10x_S_F2 307.21 281.65 33084000 57608000 130880 49131000 40366000 49212000 40994000 39221000 39725000 41113000 46132000 30805000 53722000 2877300 50721000 38723000 49905000 41510000 40438000 40696000 40076000 44304000 7 7 5 7 7 7 7 7 7 7 7 13106000 21892000 55773 19158000 13591000 25878000 16222000 14901000 15632000 15759000 17378000 12203000 20417000 1101600 19838000 13098000 25702000 16299000 15730000 15991000 15356000 16710000 3 3 2 3 3 3 3 3 3 3 3 19978000 35716000 75108 29973000 26775000 23334000 24772000 24320000 24093000 25354000 28755000 18602000 33305000 1775700 30884000 25624000 24203000 25211000 24708000 24705000 24720000 27594000 4 4 3 4 4 4 4 4 4 4 4 6288500000 2424000000 3864500000 3901 2715 3651 22042;22043;22044;22045;22046 26541;26542;26543;26544;26545;26546;26547 26546 7 EFLPEGQDIGAFVAEQK Unmodified 1876.9207 0.92069363 1511 Q04637;Q04637-3;Q04637-8;Q04637-5;Q04637-4;Q04637-9;Q04637-6;Q04637-7 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 0 By MS/MS 3 1 1 1 2 77.147 77.166 3 3.1281E-06 25556 20211116_3431_TMUAki_TMT10x_P_F4 99.569 80.246 2888800 5024600 0 3923800 2919100 5456700 2935900 2736500 2940900 3033300 3731600 2689300 4684400 178920 4103600 2795400 5403200 2977200 2928400 3019700 2950200 3575200 1 1 0 1 1 1 1 1 1 1 1 2888800 5024600 0 3923800 2919100 5456700 2935900 2736500 2940900 3033300 3731600 2689300 4684400 178920 4103600 2795400 5403200 2977200 2928400 3019700 2950200 3575200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 842520000 842520000 0 3902 1511 3652 22047;22048 26548;26549 26549 2 EFLPILQEEPLPPLALVPFTEEEQR Unmodified 2933.5426 0.54262647 2028 Q6Y7W6;Q6Y7W6-4;Q6Y7W6-5;Q6Y7W6-3 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 3 2 1 83.032 83.03 3;4 9.0512E-12 27728 20211116_3440_TMUAki_TMT10x_S_F2 111.4 104.37 1503700 2369800 21092 2401500 1630800 1950300 1692500 1390100 1468000 1517400 1806300 1400200 2211400 130630 2441000 1565500 2002000 1706600 1445400 1515300 1476700 1732000 4 4 1 4 4 4 4 4 4 4 4 561660 828310 0 914640 515700 965660 545040 559520 588920 608320 671120 522850 773220 32717 927750 494350 971480 552680 590840 600120 592100 644860 2 2 0 2 2 2 2 2 2 2 2 942070 1541500 21092 1486900 1115100 984590 1147400 830570 879080 909050 1135200 877300 1438200 97910 1513200 1071100 1030600 1153900 854590 915150 884590 1087200 2 2 1 2 2 2 2 2 2 2 2 333440000 248020000 85417000 3903 2028 3653 22049;22050;22051 26550;26551;26552;26553 26552 4 EFLSEPDLASYSVVMVDEAHER Oxidation (M) 2538.1584 0.15843408 257 O60231 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 yes yes 0 0 1 0 By MS/MS 1 0 1 1 68.157 67.951 3 0.0040648 23403 20211116_3439_TMUAki_TMT10x_S_F1 52.09 36.836 3907500 7289600 100500 7097500 5250700 4463500 5058400 3496200 3450500 3759400 5265400 3638700 6801300 398180 7214800 5033400 4687800 5091200 3611400 3645000 3660800 5023200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3907500 7289600 100500 7097500 5250700 4463500 5058400 3496200 3450500 3759400 5265400 3638700 6801300 398180 7214800 5033400 4687800 5091200 3611400 3645000 3660800 5023200 2 2 1 2 2 2 2 2 2 2 2 222700000 0 222700000 3904 257 3654 22052 26554;26555 26554 203 2 EFLVAGGEDFK Unmodified 1210.587 0.58700389 3284 Q9Y3F4;Q9Y3F4-2 STRAP Serine-threonine kinase receptor-associated protein yes no 0 0 0 0 By MS/MS By MS/MS 3.64 1.11 3 3 4 4 8 6 63.672 63.582 2;3 2.3996E-09 19073 20211116_3444_TMUAki_TMT10x_S_F5 159.83 113.22 55918000 93497000 178690 95353000 72470000 82364000 59136000 58961000 62319000 60150000 69105000 52065000 87250000 4749100 96950000 69145000 84182000 60780000 61164000 63500000 58697000 66453000 9 9 6 9 9 9 9 9 9 9 9 29706000 48348000 74684 49518000 45102000 59376000 36767000 29374000 31127000 31232000 35293000 27659000 45119000 2632400 50581000 43034000 59206000 37556000 31435000 32061000 30426000 33917000 6 6 4 6 6 6 6 6 6 6 6 26212000 45149000 104010 45835000 27368000 22988000 22369000 29587000 31191000 28918000 33812000 24406000 42131000 2116700 46369000 26111000 24976000 23224000 29729000 31438000 28270000 32536000 3 3 2 3 3 3 3 3 3 3 3 6777800000 4429900000 2347900000 3905 3284 3655 22053;22054;22055;22056;22057;22058;22059;22060;22061;22062;22063;22064;22065;22066 26556;26557;26558;26559;26560;26561;26562;26563;26564;26565;26566;26567;26568 26567 13 EFLVPSREPGK Unmodified 1257.6717 0.67173657 2009 Q6PI48 DARS2 Aspartate--tRNA ligase, mitochondrial yes yes 0 0 0 1 By MS/MS 6 0 1 1 43.143 43.308 3 0.047998 11087 20211116_3445_TMUAki_TMT10x_S_F6 52.247 30.049 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3906 2009 3656 22067 26569 26569 1 EFMPPGLQELIPFVKPAPIEQEPSKK Unmodified 2948.5722 0.57215246 1107 P49591 SARS Serine--tRNA ligase, cytoplasmic yes yes 0 0 0 2 By MS/MS 1 0 1 1 78.506 78.506 4 2.7319E-05 25682 20211116_3428_TMUAki_TMT10x_P_F1 66.793 63.608 6115000 9376400 314100 8924400 6850100 11533000 8646300 5788900 4971600 6534600 7501400 5696000 8747500 810000 9175300 6632400 11459000 8562700 6198000 5308300 6351300 7158000 1 1 1 1 1 1 1 1 1 1 1 6115000 9376400 314100 8924400 6850100 11533000 8646300 5788900 4971600 6534600 7501400 5696000 8747500 810000 9175300 6632400 11459000 8562700 6198000 5308300 6351300 7158000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 508460000 508460000 0 3907 1107 3657 22068 26570 26570 1 EFMPPGLQELIPFVKPAPIEQEPSKK Oxidation (M) 2964.5671 0.56706708 1107 P49591 SARS Serine--tRNA ligase, cytoplasmic yes yes 0 0 1 2 By MS/MS 8 0 2 2 77.489 77.495 4;5 5.5376E-12 25383 20211116_3436_TMUAki_TMT10x_P_F8 109.26 103.3 22586000 36296000 288930 31666000 22979000 50898000 28059000 28895000 30131000 31275000 29946000 21032000 33851000 2147300 32920000 22178000 50171000 28260000 30560000 30555000 30447000 28893000 4 4 4 4 4 4 4 4 4 4 4 22586000 36296000 288930 31666000 22979000 50898000 28059000 28895000 30131000 31275000 29946000 21032000 33851000 2147300 32920000 22178000 50171000 28260000 30560000 30555000 30447000 28893000 4 4 4 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2973900000 2973900000 0 3908 1107 3657 22069;22070 26571;26572;26573;26574 26573 1471 4 EFMWALK Unmodified 923.45751 0.45751004 1268 P58546 MTPN Myotrophin yes yes 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 71.513 71.734 2 0.0023825 23049 20211116_3436_TMUAki_TMT10x_P_F8 126.54 31.096 24927000 40774000 197470 42370000 36686000 40308000 40036000 15535000 12700000 17545000 28623000 23211000 38052000 2415300 43081000 35273000 40634000 39589000 17106000 14681000 17052000 27118000 3 3 3 3 3 3 3 3 3 3 3 24927000 40774000 197470 42370000 36686000 40308000 40036000 15535000 12700000 17545000 28623000 23211000 38052000 2415300 43081000 35273000 40634000 39589000 17106000 14681000 17052000 27118000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 860290000 860290000 0 3909 1268 3658 22071;22072 26575;26576;26577 26577 3 EFMWALK Oxidation (M) 939.45242 0.45242467 1268 P58546 MTPN Myotrophin yes yes 0 0 1 0 By MS/MS By MS/MS 7 0 2 1 1 62.9 63.464 2 0.077152 21325 20211116_3446_TMUAki_TMT10x_S_F7 67.344 47.905 23766000 43985000 104590 41111000 37837000 47686000 32375000 28713000 28367000 30762000 33741000 22129000 41032000 2180300 42242000 36144000 47748000 33001000 30212000 29225000 29959000 32383000 3 3 2 3 3 3 3 3 3 3 3 16700000 30809000 3339.6 28173000 28865000 40381000 24656000 19590000 19926000 21033000 22625000 15548000 28738000 1473400 29110000 27566000 39917000 25083000 21010000 20574000 20483000 21742000 2 2 1 2 2 2 2 2 2 2 2 7066300 13177000 101250 12939000 8972900 7305600 7719600 9123000 8441200 9728200 11116000 6580200 12294000 706910 13132000 8578200 7830800 7918200 9202100 8650800 9476100 10641000 1 1 1 1 1 1 1 1 1 1 1 923840000 424790000 499050000 3910 1268 3658 22073;22074 26578 26578 1710 1 EFNAEVHR Unmodified 1000.4726 0.47264284 1051 P46777 RPL5 60S ribosomal protein L5 yes yes 0 0 0 0 By MS/MS 3 1 1 1 2 29.627 29.53 3 0.00096462 7274 20211116_3429_TMUAki_TMT10x_P_F2 107.69 82.918 1646000 2434500 0 2013100 1754500 2627300 1567900 1327700 1339200 1294500 1827600 1532500 2270000 130480 2092600 1677100 2609400 1593100 1414500 1389800 1265600 1747900 2 2 0 2 2 2 2 2 2 2 2 1646000 2434500 0 2013100 1754500 2627300 1567900 1327700 1339200 1294500 1827600 1532500 2270000 130480 2092600 1677100 2609400 1593100 1414500 1389800 1265600 1747900 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 63668000 63668000 0 3911 1051 3659 22075;22076 26579;26580 26579 2 EFNAEVHRK Unmodified 1128.5676 0.56760585 1051 P46777 RPL5 60S ribosomal protein L5 yes yes 0 0 0 1 By MS/MS By MS/MS 3.42 1.26 1 2 3 3 3 8 4 27.652 27.577 3;4 1.5245E-05 6250 20211116_3433_TMUAki_TMT10x_P_F5 155.11 122.76 9725900 15386000 145310 14921000 12895000 16094000 11122000 8025000 10239000 8612100 11565000 9056800 14355000 984780 15272000 12328000 16142000 11347000 8584000 10502000 8386800 11116000 12 12 11 12 12 12 12 12 12 12 12 6277900 10058000 60265 9901900 9322800 11722000 7249400 4781500 6763000 5109900 7361100 5845800 9384200 617930 10140000 8890600 11674000 7446800 5221600 6922700 4977000 7082400 8 8 7 8 8 8 8 8 8 8 8 3448000 5328700 85040 5019300 3572000 4371400 3872200 3243500 3475600 3502200 4204400 3211000 4971100 366850 5132700 3437700 4467900 3899800 3362400 3579000 3409800 4033300 4 4 4 4 4 4 4 4 4 4 4 1367400000 1096700000 270660000 3912 1051 3660 22077;22078;22079;22080;22081;22082;22083;22084;22085;22086;22087;22088 26581;26582;26583;26584;26585;26586;26587;26588;26589;26590;26591;26592 26588 12 EFNEDGALAVLQQFK Unmodified 1707.8468 0.84680041 271;272 O60506;O60506-2;O60506-3;O60506-4 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 0 By MS/MS By MS/MS 5.82 1.39 1 4 8 5 6 4 16 12 74.253 74.278 2;3 6.9218E-72 25525 20211116_3444_TMUAki_TMT10x_S_F5 317.44 296.7 172980000 274870000 610980 271620000 172000000 227450000 198540000 114140000 124350000 143350000 189630000 161060000 256470000 13298000 276670000 165520000 231890000 197710000 122640000 132060000 138800000 180910000 28 28 12 28 28 28 28 28 28 28 28 110210000 168590000 502490 165680000 100930000 165410000 116650000 72922000 77431000 89470000 115310000 102610000 157310000 8382900 169220000 97131000 166450000 116280000 79306000 81833000 86699000 110070000 19 19 9 19 19 19 19 19 19 19 19 62776000 106270000 108480 105940000 71071000 62034000 81895000 41216000 46915000 53875000 74319000 58448000 99160000 4914700 107450000 68392000 65436000 81421000 43335000 50231000 52096000 70844000 9 9 3 9 9 9 9 9 9 9 9 36608000000 19635000000 16972000000 3913 271;272 3661 22089;22090;22091;22092;22093;22094;22095;22096;22097;22098;22099;22100;22101;22102;22103;22104;22105;22106;22107;22108;22109;22110;22111;22112;22113;22114;22115;22116 26593;26594;26595;26596;26597;26598;26599;26600;26601;26602;26603;26604;26605;26606;26607;26608;26609;26610;26611;26612;26613;26614;26615;26616;26617;26618;26619;26620;26621;26622;26623;26624 26616 32 EFNEDGALAVLQQFKDSDLSHVQNK Unmodified 2831.3726 0.37260103 271;272 O60506;O60506-2;O60506-3;O60506-4 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 1 By MS/MS By matching 7 0.707 1 2 1 2 2 77.857 77.871 4 0.0078964 24909 20211116_3434_TMUAki_TMT10x_P_F6 46.132 36.335 2567800 3935500 220540 3376100 2201600 5452400 3656200 2805500 3463100 3606600 3110500 2392500 3670100 413300 3514800 2161000 5367000 3626600 3010000 3519100 3489400 3011500 1 1 1 1 1 1 1 1 1 1 1 2567800 3935500 220540 3376100 2201600 5452400 3656200 2805500 3463100 3606600 3110500 2392500 3670100 413300 3514800 2161000 5367000 3626600 3010000 3519100 3489400 3011500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5343500000 1815000000 3528500000 3914 271;272 3662 22117;22118;22119;22120 26625 26625 1 EFNEEGALSVLQQFK Unmodified 1737.8574 0.85736509 211 O43390;O43390-2;O43390-3 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 0 By MS/MS By MS/MS 5.69 1.54 2 1 2 3 4 1 7 6 79.025 79.014 2;3 3.1184E-14 25334 20211116_3434_TMUAki_TMT10x_P_F6 143.38 124.78 31953000 51326000 188830 44075000 31045000 44463000 37590000 26089000 27131000 30314000 34467000 29748000 47865000 2220400 45481000 29905000 44859000 37463000 27579000 28319000 29432000 33022000 6 6 2 6 6 6 6 6 6 6 6 16673000 26390000 99719 23313000 15366000 28118000 18309000 13319000 14428000 16113000 18070000 15522000 24613000 1159800 24072000 14794000 28016000 18298000 14372000 14977000 15621000 17319000 3 3 1 3 3 3 3 3 3 3 3 15280000 24936000 89110 20762000 15679000 16345000 19281000 12769000 12703000 14201000 16396000 14225000 23252000 1060600 21409000 15110000 16843000 19165000 13206000 13342000 13811000 15703000 3 3 1 3 3 3 3 3 3 3 3 7958000000 3227700000 4730300000 3915 211 3663 22121;22122;22123;22124;22125;22126;22127;22128;22129;22130;22131;22132;22133 26626;26627;26628;26629;26630;26631;26632;26633;26634 26627 9 EFNPTKPLLSVNK Unmodified 1485.8191 0.81912909 2315 Q8WWM7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7-3 ATXN2L Ataxin-2-like protein yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 57.229 57.007 3 7.2803E-06 16868 20211116_3428_TMUAki_TMT10x_P_F1 97.223 72.288 3111600 5590500 0 5656100 3434000 3076700 2743500 5416500 4939900 4674900 5109700 2896900 5216800 220530 5727000 3272600 3346000 2886900 5366800 4935400 4596300 4923900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3111600 5590500 0 5656100 3434000 3076700 2743500 5416500 4939900 4674900 5109700 2896900 5216800 220530 5727000 3272600 3346000 2886900 5366800 4935400 4596300 4923900 1 1 0 1 1 1 1 1 1 1 1 232640000 0 232640000 3916 2315 3664 22134;22135 26635;26636 26635 2 EFPDVLECTVSHAVEK Unmodified 1858.8771 0.87711426 1075 P48507 GCLM Glutamate--cysteine ligase regulatory subunit yes yes 0 0 0 0 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 69.686 69.528 3 1.3781E-22 25119 20211116_3441_TMUAki_TMT10x_S_F3 179.17 156.69 45791000 80074000 701650 71692000 63019000 80233000 66753000 57531000 54267000 59540000 64671000 42641000 74686000 4605300 73857000 60556000 80699000 67129000 59699000 56122000 58067000 62063000 11 11 9 11 11 11 11 11 11 11 11 28039000 48824000 407300 44156000 36980000 57512000 42643000 34369000 31643000 34500000 39231000 26110000 45540000 2743200 45576000 35620000 57246000 42618000 36116000 32942000 33690000 37609000 6 6 4 6 6 6 6 6 6 6 6 17752000 31250000 294350 27536000 26039000 22721000 24110000 23162000 22624000 25039000 25440000 16531000 29146000 1862100 28282000 24936000 23453000 24511000 23583000 23181000 24377000 24454000 5 5 5 5 5 5 5 5 5 5 5 3377900000 1320800000 2057100000 3917 1075 3665 22136;22137;22138;22139;22140 26637;26638;26639;26640;26641;26642;26643;26644;26645;26646;26647 26643 11 EFPGLAGVK Unmodified 916.50182 0.5018177 2227 Q8NBS9;Q8NBS9-2 TXNDC5 Thioredoxin domain-containing protein 5 yes no 0 0 0 0 By MS/MS 7 0 1 1 56.314 56.839 2 0.0060535 18607 20211116_3446_TMUAki_TMT10x_S_F7 71.501 27.693 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3918 2227 3666 22141 26648 26648 1 EFPNFDKQELR Unmodified 1421.6939 0.69392858 2808 Q9H4L7;Q9H4L7-2 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 yes no 0 0 0 1 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 51.024 51.194 3 0.0026023 15121 20211116_3433_TMUAki_TMT10x_P_F5 73.466 42.916 7213300 12861000 51453 13082000 16243000 16741000 9120900 15136000 13711000 12554000 12648000 6716000 12002000 692940 13385000 15393000 16793000 9766200 15393000 13710000 12367000 12234000 2 2 1 2 2 2 2 2 2 2 2 4207900 7249200 0 7502000 12198000 13591000 6614600 8890200 8127800 7584300 7527000 3917400 6765200 381260 7726500 11551000 13364000 7048300 9237100 8181100 7461100 7279600 1 1 0 1 1 1 1 1 1 1 1 3005400 5611900 51453 5580300 4044800 3149800 2506300 6245800 5583600 4969800 5121000 2798700 5236400 311670 5658700 3842800 3428300 2717900 6155900 5529200 4906300 4954300 1 1 1 1 1 1 1 1 1 1 1 659840000 283200000 376640000 3919 2808 3667 22142;22143;22144 26649;26650;26651 26649 3 EFPPGTPR Unmodified 899.45012 0.45011648 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 3.8 0.4 1 4 3 2 34.303 34.353 2 0.0028762 9710 20211116_3430_TMUAki_TMT10x_P_F3 104.21 48.307 836210 1291600 6928 1484700 1038800 878210 860620 859690 882580 801610 1127500 778560 1205900 68720 1492000 991370 931650 882960 873270 905610 785280 1080100 6 6 2 6 6 6 6 6 6 6 6 156690 219850 0 258400 336610 278020 158970 136380 165000 145770 162590 145860 205280 11555 261180 318040 278840 170720 146090 167510 141980 156920 2 2 0 2 2 2 2 2 2 2 2 679520 1071800 6928 1226300 702210 600190 701660 723310 717580 655840 964890 632700 1000600 57165 1230800 673330 652820 712240 727180 738090 643310 923140 4 4 2 4 4 4 4 4 4 4 4 49607000 35431000 14176000 3920 1433 3668 22145;22146;22147;22148;22149 26652;26653;26654;26655;26656;26657;26658 26653 7 EFPTVPLVK Unmodified 1028.5906 0.59063271 1868 Q16851;Q16851-2 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 63.731 64.283 2 0.0022431 21151 20211116_3435_TMUAki_TMT10x_P_F7 87.696 70.671 23751000 35741000 426270 34911000 25419000 36170000 23655000 33345000 31237000 31985000 32500000 22118000 33347000 2389800 35692000 24354000 36706000 24321000 34005000 31491000 31294000 31313000 2 2 2 2 2 2 2 2 2 2 2 9316600 15854000 224810 15291000 12921000 22810000 11433000 13644000 13964000 13577000 13395000 8676300 14791000 1032400 15751000 12365000 22568000 11753000 14333000 14075000 13263000 12939000 1 1 1 1 1 1 1 1 1 1 1 14435000 19887000 201470 19620000 12498000 13360000 12222000 19701000 17273000 18407000 19106000 13442000 18556000 1357400 19941000 11989000 14139000 12568000 19672000 17417000 18031000 18374000 1 1 1 1 1 1 1 1 1 1 1 1302300000 663710000 638640000 3921 1868 3669 22150;22151 26659;26660 26659 2 EFQQNNWHAVGCGFR Unmodified 1848.8114 0.81143473 3036 Q9NZL9;Q9NZL9-2;Q9NZL9-3;Q9NZL9-4;Q9NZL9-5 MAT2B Methionine adenosyltransferase 2 subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 44.751 45.265 3 3.0847E-14 13917 20211116_3446_TMUAki_TMT10x_S_F7 143.56 127.97 3535000 6314300 25386 7548900 7138300 6699600 4454500 4465500 4826800 3806500 5232200 3290700 5896600 250870 7601200 6771000 6827200 4670300 4633300 4908600 3744800 5034700 2 2 1 2 2 2 2 2 2 2 2 2061100 3445500 0 4071000 5892000 5798600 3297600 2792300 3209900 2288600 2840100 1918200 3217300 108210 4134700 5576700 5733100 3477800 2975700 3256300 2255900 2751200 1 1 0 1 1 1 1 1 1 1 1 1473800 2868900 25386 3477900 1246300 900930 1156900 1673200 1616900 1517900 2392000 1372500 2679300 142660 3466400 1194300 1094100 1192400 1657600 1652300 1488900 2283500 1 1 1 1 1 1 1 1 1 1 1 821110000 522120000 298990000 3922 3036 3670 22152;22153;22154 26661;26662;26663 26663 3 EFQQNNWHAVGCGFRR Unmodified 2004.9125 0.91254576 3036 Q9NZL9;Q9NZL9-2;Q9NZL9-3;Q9NZL9-4;Q9NZL9-5 MAT2B Methionine adenosyltransferase 2 subunit beta yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 38.044 38.046 4 2.8606E-15 9083 20211116_3440_TMUAki_TMT10x_S_F2 151.07 130.41 1637300 2825600 3021.3 3055000 3666800 2699100 1868100 1401300 1551100 1275800 2301000 1524200 2637500 129240 3095100 3468400 2742500 1979200 1486500 1618500 1251200 2196500 2 2 1 2 2 2 2 2 2 2 2 1484200 2561900 0 2754900 3497600 2571100 1704400 1216200 1366600 1118800 2060300 1381600 2391200 113500 2794100 3306100 2600200 1812200 1302000 1429700 1096700 1966000 1 1 0 1 1 1 1 1 1 1 1 153100 263740 3021.3 300150 169160 128030 163700 185060 184510 157050 240750 142580 246230 15734 301060 162250 142330 166980 184440 188790 154540 230500 1 1 1 1 1 1 1 1 1 1 1 105410000 63498000 41910000 3923 3036 3671 22155;22156;22157 26664 26664 1 EFQQYLPVVMGPLMK 2 Oxidation (M) 1810.8998 0.89976395 84 O00410;O00410-2;O00410-3 IPO5 Importin-5 yes no 0 0 2 0 By MS/MS By MS/MS 5.57 2.92 2 3 2 3 4 74.788 74.775 3 0.00010468 23689 20211116_3447_TMUAki_TMT10x_S_F8 82.578 62.197 14561000 26062000 14247 20136000 18170000 30547000 19407000 24293000 23802000 23428000 21446000 13556000 24296000 1024900 21116000 17439000 30337000 19757000 24989000 23939000 22917000 20761000 9 9 2 9 9 9 9 9 9 9 9 8330400 14576000 4181.6 10880000 9063600 21870000 11254000 13831000 13386000 13152000 11885000 7755100 13587000 538880 11525000 8735100 21421000 11366000 14448000 13471000 12873000 11512000 4 4 1 4 4 4 4 4 4 4 4 6230600 11485000 10066 9255700 9106900 8676900 8153500 10461000 10416000 10276000 9560600 5800700 10709000 486060 9591200 8703500 8915300 8390400 10541000 10467000 10044000 9249200 5 5 1 5 5 5 5 5 5 5 5 4520400000 2254400000 2266000000 3924 84 3672 22158;22159;22160;22161;22162;22163;22164 26665;26666;26667;26668;26669;26670;26671;26672;26673;26674;26675 26675 51;52 11 EFQQYLPVVMGPLMK Unmodified 1778.9099 0.90993471 84 O00410;O00410-2;O00410-3 IPO5 Importin-5 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 79.987 79.94 3 2.4602E-05 29206 20211116_3441_TMUAki_TMT10x_S_F3 96.673 83.795 16076000 24547000 148010 25083000 17506000 21925000 18418000 9096100 8517800 10600000 17760000 14969000 22907000 1399200 25504000 16811000 22242000 18328000 9940700 9426600 10290000 16847000 4 4 3 4 4 4 4 4 4 4 4 11766000 17883000 148010 18171000 12279000 18594000 13503000 7202100 6705800 8644400 13366000 10957000 16688000 1120600 18523000 11814000 18660000 13422000 7940700 7355800 8383100 12687000 3 3 3 3 3 3 3 3 3 3 3 4310000 6664100 0 6912700 5226800 3330800 4915300 1894000 1812000 1955300 4394400 4012300 6219200 278520 6980900 4997900 3581900 4906000 2000000 2070900 1907200 4159200 1 1 0 1 1 1 1 1 1 1 1 1420400000 837350000 583090000 3925 84 3672 22165;22166;22167 26676;26677;26678;26679 26679 4 EFQQYLPVVMGPLMK Oxidation (M) 1794.9048 0.90484933 84 O00410;O00410-2;O00410-3 IPO5 Importin-5 yes no 0 0 1 0 By MS/MS 2 0 1 1 78.718 78.694 3 4.7686E-05 25940 20211116_3440_TMUAki_TMT10x_S_F2 91.076 69.519 2595900 4791100 62248 4142200 3482400 2590400 3104100 2111100 1798800 2519400 3313200 2417500 4468200 285650 4248400 3333400 2723800 3128000 2182800 1940800 2443800 3149200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2595900 4791100 62248 4142200 3482400 2590400 3104100 2111100 1798800 2519400 3313200 2417500 4468200 285650 4248400 3333400 2723800 3128000 2182800 1940800 2443800 3149200 1 1 1 1 1 1 1 1 1 1 1 706620000 0 706620000 3926 84 3672 22168 26680 26680 51;52 1 EFRDYPPLR Unmodified 1191.6037 0.60365701 3027 Q9NZ01;Q9NZ01-2 TECR Very-long-chain enoyl-CoA reductase yes no 0 0 0 1 By MS/MS By MS/MS 5.11 0.875 3 2 4 3 6 37.812 37.905 3 0.0001462 9461 20211116_3442_TMUAki_TMT10x_S_F4 130.98 84.521 5266800 8363600 242490 9881400 9648500 8945300 6603400 6097500 6441900 5808100 7405200 4905700 7809800 724020 9959500 9189600 9106600 6852300 6334600 6594800 5684400 7113700 8 8 8 8 8 8 8 8 8 8 8 3472300 5455600 140790 6423200 7817800 7092200 4554000 4016200 4261300 3837400 4808000 3234100 5094300 479950 6494400 7422500 7114600 4780900 4233200 4367400 3755100 4621200 3 3 3 3 3 3 3 3 3 3 3 1794500 2907900 101700 3458200 1830700 1853200 2049400 2081300 2180600 1970700 2597200 1671600 2715500 244060 3465100 1767000 1992000 2071400 2101300 2227400 1929300 2492500 5 5 5 5 5 5 5 5 5 5 5 409440000 278580000 130860000 3927 3027 3673 22169;22170;22171;22172;22173;22174;22175;22176;22177 26681;26682;26683;26684;26685;26686;26687;26688;26689;26690 26684 10 EFRPEDQPWLLR Unmodified 1584.8049 0.80487601 932 P35269 GTF2F1 General transcription factor IIF subunit 1 yes yes 0 0 0 1 By MS/MS By MS/MS 5.4 0.49 3 2 3 2 58.248 58.369 3 1.6011E-12 16929 20211116_3444_TMUAki_TMT10x_S_F5 141.37 122.3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3928 932 3674 22178;22179;22180;22181;22182 26691;26692;26693;26694;26695 26694 5 EFSGNPIK Unmodified 890.44978 0.44978213 940 P35637;P35637-2 FUS RNA-binding protein FUS yes no 0 0 0 0 By MS/MS By MS/MS 5.14 0.99 2 3 1 1 3 4 41.816 41.938 2;3 0.00042771 11403 20211116_3433_TMUAki_TMT10x_P_F5 146.27 113.15 13634000 22476000 94450 22653000 28985000 26259000 18627000 18225000 20827000 16694000 20845000 12695000 20973000 1379600 23151000 27534000 26348000 19504000 18889000 21092000 16367000 20108000 4 4 2 4 4 4 4 4 4 4 4 8646400 13787000 94450 14206000 23008000 21395000 12473000 11775000 13518000 10976000 13369000 8051400 12866000 1006000 14570000 21802000 21136000 13235000 12434000 13702000 10753000 12901000 2 2 2 2 2 2 2 2 2 2 2 4987900 8689300 0 8447200 5977300 4863700 6154200 6449400 7308200 5717800 7475700 4643800 8107100 373610 8581100 5732300 5211500 6269000 6455400 7390300 5614400 7206300 2 2 0 2 2 2 2 2 2 2 2 1148700000 747990000 400670000 3929 940 3675 22183;22184;22185;22186;22187;22188;22189 26696;26697;26698;26699;26700;26701;26702 26697 7 EFSHIAFLTIK Unmodified 1304.7129 0.71287311 609 P10619;P10619-2 CTSA Lysosomal protective protein;Lysosomal protective protein 32 kDa chain;Lysosomal protective protein 20 kDa chain yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 65.781 65.781 3 2.162E-05 22552 20211116_3439_TMUAki_TMT10x_S_F1 100.55 82.242 3545600 5299500 120630 4989700 3681300 6458100 3720700 3291400 3439400 3281100 3734700 3302200 4943800 408280 5134200 3538100 6417400 3763300 3506000 3521800 3204900 3593600 1 1 1 1 1 1 1 1 1 1 1 3545600 5299500 120630 4989700 3681300 6458100 3720700 3291400 3439400 3281100 3734700 3302200 4943800 408280 5134200 3538100 6417400 3763300 3506000 3521800 3204900 3593600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 478390000 478390000 0 3930 609 3676 22190;22191 26703;26704 26704 2 EFSIDVGYER Unmodified 1213.5615 0.56151742 1296 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 3 4 55.683 55.489 2 9.6074E-13 17842 20211116_3429_TMUAki_TMT10x_P_F2 218.58 188.26 35271000 58454000 239390 56610000 44737000 58942000 41231000 51502000 50517000 49102000 50312000 32842000 54537000 3210000 57916000 42818000 59735000 42293000 52667000 50979000 48054000 48540000 8 8 4 8 8 8 8 8 8 8 8 19398000 30971000 90087 29451000 24991000 41715000 24341000 26194000 26375000 25530000 25283000 18062000 28893000 1723300 30336000 23949000 41391000 24787000 27396000 26704000 24961000 24424000 4 4 2 4 4 4 4 4 4 4 4 15873000 27484000 149300 27159000 19746000 17228000 16890000 25308000 24143000 23572000 25029000 14781000 25644000 1486700 27581000 18869000 18344000 17506000 25271000 24275000 23093000 24117000 4 4 2 4 4 4 4 4 4 4 4 2627000000 1352900000 1274100000 3931 1296 3677 22192;22193;22194;22195;22196;22197;22198 26705;26706;26707;26708;26709;26710;26711;26712 26707 8 EFSITDVVPYPISLR Unmodified 1734.9192 0.91923707 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 0 By MS/MS By MS/MS 6.93 0.961 1 4 4 5 7 7 73.454 73.454 2;3 3.1836E-72 25497 20211116_3434_TMUAki_TMT10x_P_F6 327.1 276.22 55868000 89172000 550190 79261000 63322000 86258000 68601000 60536000 58085000 66167000 70659000 52021000 83170000 3835900 81664000 60869000 86865000 68983000 63016000 59998000 64390000 67773000 14 14 6 14 14 14 14 14 14 14 14 28958000 46243000 508620 40394000 26302000 52777000 32041000 30361000 29617000 32781000 35750000 26966000 43128000 2771400 41807000 25390000 52498000 32126000 32073000 30454000 31916000 34297000 8 8 4 8 8 8 8 8 8 8 8 26910000 42929000 41572 38867000 37021000 33482000 36559000 30175000 28468000 33386000 34908000 25055000 40042000 1064500 39857000 35479000 34367000 36857000 30943000 29544000 32474000 33475000 6 6 2 6 6 6 6 6 6 6 6 17011000000 8524900000 8486400000 3932 916 3678 22199;22200;22201;22202;22203;22204;22205;22206;22207;22208;22209;22210;22211;22212 26713;26714;26715;26716;26717;26718;26719;26720;26721;26722;26723;26724;26725;26726;26727 26713 15 EFSPFGSITSAK Unmodified 1269.6241 0.62411768 1619 Q13310;Q13310-2;Q13310-3 PABPC4 Polyadenylate-binding protein 4 yes no 0 0 0 0 By MS/MS By MS/MS 7.12 0.781 2 3 3 4 4 63.742 64.017 2;3 2.315E-38 19302 20211116_3447_TMUAki_TMT10x_S_F8 279.64 251.22 38645000 67349000 236350 67397000 52000000 65794000 44607000 50552000 51858000 49634000 52750000 35982000 62844000 3400500 68729000 49675000 66782000 45858000 52139000 52471000 48513000 50858000 7 7 3 7 7 7 7 7 7 7 7 21254000 35594000 225740 36308000 31664000 48271000 28353000 27503000 27840000 26395000 28570000 19791000 33216000 2037200 37169000 30286000 47971000 28917000 28978000 28370000 25825000 27538000 4 4 2 4 4 4 4 4 4 4 4 17391000 31755000 10612 31089000 20336000 17522000 16255000 23048000 24018000 23239000 24180000 16192000 29628000 1363400 31560000 19388000 18812000 16941000 23161000 24100000 22689000 23320000 3 3 1 3 3 3 3 3 3 3 3 6090100000 3758700000 2331500000 3933 1619 3679 22213;22214;22215;22216;22217;22218;22219;22220 26728;26729;26730;26731;26732;26733;26734;26735 26734 8 EFSPFGTITSAK Unmodified 1283.6398 0.63976774 634 P11940;P11940-2 PABPC1 Polyadenylate-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 2 4 4 6 4 64.149 64.4 2;3 2.315E-38 21108 20211116_3435_TMUAki_TMT10x_P_F7 279.64 227.16 83146000 136440000 314040 152700000 93513000 110760000 83243000 78975000 82647000 79523000 98024000 77415000 127370000 6700400 154000000 89385000 114710000 84955000 81917000 84651000 77644000 94085000 11 11 6 11 11 11 11 11 11 11 11 46557000 75212000 181170 83547000 58417000 82209000 52664000 43992000 45215000 43884000 53630000 43347000 70212000 3804300 84623000 55854000 82973000 53489000 46654000 46623000 42864000 51474000 6 6 3 6 6 6 6 6 6 6 6 36589000 61224000 132870 69149000 35096000 28555000 30579000 34983000 37432000 35639000 44395000 34067000 57158000 2896100 69377000 33531000 31738000 31466000 35264000 38028000 34780000 42611000 5 5 3 5 5 5 5 5 5 5 5 12172000000 7112000000 5059700000 3934 634 3680 22221;22222;22223;22224;22225;22226;22227;22228;22229;22230 26736;26737;26738;26739;26740;26741;26742;26743;26744;26745;26746 26738 11 EFTEAVEAK Unmodified 1022.492 0.49204087 924 P35232 PHB Prohibitin yes yes 0 0 0 0 By MS/MS 3 0.816 1 1 1 3 45.634 45.449 2 2.1232E-07 12378 20211116_3440_TMUAki_TMT10x_S_F2 201.07 146.87 4143200 6728300 10901 6729400 4311000 3683500 4122800 4361700 4911500 4084000 5431900 3857600 6278200 330420 6819400 4127900 3955600 4216200 4392200 4980500 4000100 5223800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4143200 6728300 10901 6729400 4311000 3683500 4122800 4361700 4911500 4084000 5431900 3857600 6278200 330420 6819400 4127900 3955600 4216200 4392200 4980500 4000100 5223800 2 2 1 2 2 2 2 2 2 2 2 204940000 0 204940000 3935 924 3681 22231;22232;22233 26747;26748;26749 26747 3 EFTEREQGEVR Unmodified 1378.6477 0.64770667 588 P09936 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.27 1.29 4 3 2 1 1 6 5 29.271 29.195 2;3 6.9344E-28 5670 20211116_3428_TMUAki_TMT10x_P_F1 261.65 225.99 3476200 5331100 17875 5725900 6788700 6348200 4591000 3720500 4076200 3605200 4738300 3236700 4976000 322590 5822800 6453800 6369700 4755900 3911900 4192800 3525800 4550400 11 11 5 11 11 11 11 11 11 11 11 2621900 3800100 17875 4209500 5008700 5025400 2991300 2759500 2946800 2555400 3418800 2441300 3547400 266430 4277700 4752800 5018300 3138300 2913900 3016600 2504100 3283400 7 7 5 7 7 7 7 7 7 7 7 854390 1531100 0 1516300 1780000 1322900 1599700 960960 1129300 1049800 1319500 795370 1428600 56160 1545000 1700900 1351400 1617500 997960 1176200 1021700 1267000 4 4 0 4 4 4 4 4 4 4 4 1366200000 985410000 380790000 3936 588 3682 22234;22235;22236;22237;22238;22239;22240;22241;22242;22243;22244 26750;26751;26752;26753;26754;26755;26756;26757;26758;26759;26760 26752 11 EFTGSQNSIFPVFDNLLLLDR Unmodified 2424.2325 0.23252572 2412 Q96AX1 VPS33A Vacuolar protein sorting-associated protein 33A yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 82.391 82.412 3 3.0384E-05 29213 20211116_3446_TMUAki_TMT10x_S_F7 75.773 69.959 4847300 7267000 7121.5 7707700 4878500 6208700 5260300 3205800 2455300 3092100 4804400 4513200 6782500 390550 7809600 4686500 6350000 5228900 3407500 2704000 3024600 4561900 3 3 1 3 3 3 3 3 3 3 3 4034100 5944300 7121.5 6542800 3699700 5618200 4470700 2593900 1995100 2618400 3883600 3756200 5548900 331430 6618600 3566900 5712600 4417900 2790600 2205000 2556300 3687900 2 2 1 2 2 2 2 2 2 2 2 813230 1322700 0 1165000 1178800 590430 789590 611910 460250 473680 920740 757090 1233600 59121 1191000 1119600 637410 811070 616930 498970 468320 873950 1 1 0 1 1 1 1 1 1 1 1 235380000 153210000 82173000 3937 2412 3683 22245;22246 26761 26761 1 EFTKLEEVLTNKK Unmodified 1577.8665 0.86647322 1432 P78417;P78417-3 GSTO1 Glutathione S-transferase omega-1 yes no 0 0 0 2 By MS/MS By matching 8 0 2 1 1 63.47 63.557 4 0.00035378 19616 20211116_3436_TMUAki_TMT10x_P_F8 83.692 66.063 6929200 11324000 0 12647000 16132000 18400000 10182000 9289200 8317600 8996700 9588700 6451100 10572000 627300 12895000 15314000 18185000 10581000 9895600 8588400 8798700 9210500 1 1 0 1 1 1 1 1 1 1 1 6929200 11324000 0 12647000 16132000 18400000 10182000 9289200 8317600 8996700 9588700 6451100 10572000 627300 12895000 15314000 18185000 10581000 9895600 8588400 8798700 9210500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1162900000 710900000 452040000 3938 1432 3684 22247;22248 26762 26762 1 EFTLEFSR Unmodified 1027.4975 0.4974606 697 P16615;P16615-5;P16615-2;P16615-3;P16615-4;O14983;O14983-3;O14983-2;Q93084;Q93084-2;Q93084-4;Q93084-3;Q93084-7;Q93084-6;Q93084-5 ATP2A2;ATP2A1;ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1;Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 58.158 58.114 2 0.00045223 18132 20211116_3442_TMUAki_TMT10x_S_F4 153.04 125.78 39594000 64220000 466980 68356000 51766000 56004000 43255000 45250000 44276000 42211000 50989000 36869000 59940000 3752600 69257000 49441000 57573000 44352000 46459000 45237000 41351000 48979000 5 5 4 5 5 5 5 5 5 5 5 17055000 26466000 256040 27881000 25325000 34012000 20191000 18616000 18173000 17007000 20639000 15881000 24701000 1632700 28435000 24161000 33925000 20687000 19657000 18664000 16676000 19834000 2 2 1 2 2 2 2 2 2 2 2 22540000 37754000 210930 40475000 26440000 21992000 23064000 26634000 26103000 25204000 30350000 20988000 35239000 2119900 40823000 25280000 23649000 23665000 26803000 26573000 24675000 29146000 3 3 3 3 3 3 3 3 3 3 3 3725300000 1904900000 1820400000 3939 697 3685 22249;22250;22251;22252;22253;22254 26763;26764;26765;26766;26767 26766 5 EFTNVYIK Unmodified 1012.5229 0.52294707 634;1619 P11940;P11940-2;Q13310;Q13310-2;Q13310-3 PABPC1;PABPC4 Polyadenylate-binding protein 1;Polyadenylate-binding protein 4 no no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 54.037 54.348 2 0.0038571 15577 20211116_3445_TMUAki_TMT10x_S_F6 99.802 47.807 6673000 11216000 168870 12795000 6445700 5357600 5844700 8677700 9976300 6755500 9107800 6214500 10472000 707440 12830000 6175600 5991300 6087800 8597800 9937600 6676900 8812900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6673000 11216000 168870 12795000 6445700 5357600 5844700 8677700 9976300 6755500 9107800 6214500 10472000 707440 12830000 6175600 5991300 6087800 8597800 9937600 6676900 8812900 1 1 1 1 1 1 1 1 1 1 1 547830000 0 547830000 3940 634;1619 3686 22255;22256 26768 26768 1 EFVEACLNKEPSFRPTAK Unmodified 2122.0517 0.05172458 3348 Q9Y6E0;Q9Y6E0-2 STK24 Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit yes no 0 0 0 2 By MS/MS 8 0 1 1 51.656 51.742 4 7.2041E-12 14807 20211116_3436_TMUAki_TMT10x_P_F8 130.56 118.43 13695000 22720000 270980 22089000 21868000 27650000 16143000 14950000 15316000 14331000 16486000 12753000 21197000 1438900 22662000 20836000 27539000 16648000 15823000 15660000 14022000 15867000 3 3 2 3 3 3 3 3 3 3 3 13695000 22720000 270980 22089000 21868000 27650000 16143000 14950000 15316000 14331000 16486000 12753000 21197000 1438900 22662000 20836000 27539000 16648000 15823000 15660000 14022000 15867000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 538200000 538200000 0 3941 3348 3687 22257 26769;26770;26771 26769 3 EGAAHAFAQYNLDQFTPVK Unmodified 2106.0171 0.017053633 1062 P47755;P47755-2 CAPZA2 F-actin-capping protein subunit alpha-2 yes no 0 0 0 0 By MS/MS 7 0 1 1 62.466 63.161 3 0.0064282 20661 20211116_3435_TMUAki_TMT10x_P_F7 52.298 40.858 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3942 1062 3688 22258 26772 26772 1 EGAAHAFAQYNMDQFTPVK Oxidation (M) 2139.9684 0.96838888 1192 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 0 0 1 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 51.886 52.018 3 7.0329E-05 16671 20211116_3446_TMUAki_TMT10x_S_F7 73.809 63.752 4238900 6729800 59016 6947500 3667600 3633500 3424700 4889500 5102300 4673900 5124700 3946900 6280500 355910 7022700 3511400 3934200 3538500 4901400 5118100 4573600 4942900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4238900 6729800 59016 6947500 3667600 3633500 3424700 4889500 5102300 4673900 5124700 3946900 6280500 355910 7022700 3511400 3934200 3538500 4901400 5118100 4573600 4942900 2 2 1 2 2 2 2 2 2 2 2 186000000 0 186000000 3943 1192 3689 22259;22260;22261 26773;26774;26775;26776 26776 1597 4 EGAAHAFAQYNMDQFTPVK Unmodified 2123.9735 0.97347426 1192 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 0 0 0 0 By MS/MS 8 0 1 1 59.355 59.532 3 0.0021848 17973 20211116_3436_TMUAki_TMT10x_P_F8 62.658 50.225 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3944 1192 3689 22262 26777 26777 1 EGAAVIDVGINR Unmodified 1212.6463 0.64625011 664 P13995;P13995-2 MTHFD2 Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase yes no 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 47.641 47.625 2 1.1226E-08 14973 20211116_3430_TMUAki_TMT10x_P_F3 146.11 94.579 8598300 14064000 9909.8 15779000 14834000 14026000 9633100 9957200 10005000 9016900 12179000 8005500 13130000 762920 15949000 14090000 14306000 10055000 10301000 10239000 8845100 11681000 4 4 1 4 4 4 4 4 4 4 4 5106500 8005200 9909.8 8884400 11161000 10846000 6344300 5708000 5833900 5303400 7039400 4754400 7473000 485050 9030700 10579000 10812000 6671400 6050700 6000100 5196200 6753400 2 2 1 2 2 2 2 2 2 2 2 3491800 6059200 0 6894200 3672700 3180700 3288800 4249200 4171200 3713500 5139400 3251100 5657000 277870 6918700 3511000 3493300 3383300 4250300 4239200 3648900 4927800 2 2 0 2 2 2 2 2 2 2 2 796220000 409340000 386880000 3945 664 3690 22263;22264;22265;22266;22267 26778;26779;26780;26781;26782 26779 5 EGAFSNFPISEETIK Unmodified 1667.8043 0.80426689 2918;2621 Q9NR30;Q9NR30-2;Q9BQ39 DDX21;DDX50 Nucleolar RNA helicase 2;ATP-dependent RNA helicase DDX50 no no 0 0 0 0 By MS/MS By MS/MS 4.44 1.22 1 3 4 4 4 9 7 68.403 68.309 2;3 4.8342E-38 21900 20211116_3431_TMUAki_TMT10x_P_F4 254.18 205.9 188170000 322110000 3285500 296820000 216990000 307610000 217590000 213530000 205620000 221490000 246830000 175220000 300470000 18234000 304760000 208220000 310590000 220310000 222090000 211170000 215990000 236830000 30 30 20 30 30 30 30 30 30 30 30 107050000 178440000 2240900 162120000 115600000 224950000 130040000 120270000 120700000 129870000 137450000 99684000 166440000 10624000 167480000 111310000 222940000 130860000 127850000 123800000 126440000 132080000 17 17 11 17 17 17 17 17 17 17 17 81121000 143670000 1044600 134710000 101390000 82654000 87550000 93264000 84917000 91618000 109380000 75537000 134030000 7610000 137280000 96913000 87652000 89449000 94239000 87371000 89547000 104760000 13 13 9 13 13 13 13 13 13 13 13 20540000000 10845000000 9694800000 3946 2918;2621 3691 22268;22269;22270;22271;22272;22273;22274;22275;22276;22277;22278;22279;22280;22281;22282;22283 26783;26784;26785;26786;26787;26788;26789;26790;26791;26792;26793;26794;26795;26796;26797;26798;26799;26800;26801;26802;26803;26804;26805;26806;26807;26808;26809;26810;26811;26812 26789 30 EGALCEENMR Oxidation (M) 1223.4911 0.49107137 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 29.359 29.4 2 0.0016802 5766 20211116_3428_TMUAki_TMT10x_P_F1 93.938 67.149 300070 538420 0 475950 520020 340150 317390 159860 169630 168540 368120 279380 502170 26756 487930 493450 350850 327960 171890 186080 164250 348970 2 2 0 2 2 2 2 2 2 2 2 142620 233670 0 222020 359180 215280 145090 66868 73533 80988 160400 132790 218000 14548 227220 339000 216400 156150 75899 81021 78516 152040 1 1 0 1 1 1 1 1 1 1 1 157450 304750 0 253930 160840 124870 172290 92990 96095 87555 207720 146590 284170 12208 260710 154450 134460 171810 95992 105060 85734 196930 1 1 0 1 1 1 1 1 1 1 1 31239000 13654000 17585000 3947 653 3692 22284;22285 26813;26814 26813 706 2 EGALCEENMR Unmodified 1207.4962 0.49615675 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 By MS/MS By matching 1.33 0.471 2 1 2 1 33.404 33.334 2 0.00021074 8832 20211116_3429_TMUAki_TMT10x_P_F2 117.7 105.17 970660 1489800 0 1823300 3139100 1444600 1184100 596480 708630 538400 1155700 903650 1391400 94985 1830900 2959800 1476000 1288600 647520 757580 528220 1101000 2 2 0 2 2 2 2 2 2 2 2 970660 1489800 0 1823300 3139100 1444600 1184100 596480 708630 538400 1155700 903650 1391400 94985 1830900 2959800 1476000 1288600 647520 757580 528220 1101000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 71432000 63186000 8246300 3948 653 3692 22286;22287;22288 26815;26816 26816 2 EGATVYATGTHAQVEDGR Unmodified 1860.8602 0.86021864 902 P32322;P32322-2;P32322-3 PYCR1 Pyrroline-5-carboxylate reductase 1, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 2.71 1.39 2 1 2 1 1 5 2 31.87 31.799 3 1.2745E-79 9698 20211116_3441_TMUAki_TMT10x_S_F3 300.29 278.47 1602700 2569700 38061 3098100 3394000 2698600 2076100 1344500 1553600 1297500 2097500 1492500 2399800 185540 3117300 3223000 2743300 2158600 1433900 1622700 1269200 2006600 7 7 6 7 7 7 7 7 7 7 7 1037400 1664900 28658 1977300 2842400 2132300 1408500 892950 1077500 871260 1397600 966030 1554700 130100 1997400 2690600 2134800 1493400 969790 1122000 851810 1338300 5 5 4 5 5 5 5 5 5 5 5 565380 904730 9403.1 1120800 551560 566260 667550 451550 476110 426260 699900 526500 845020 55444 1119900 532340 608500 665130 464140 500670 417350 668240 2 2 2 2 2 2 2 2 2 2 2 608480000 320730000 287750000 3949 902 3693 22289;22290;22291;22292;22293;22294;22295 26817;26818;26819;26820;26821;26822;26823 26823 7 EGCEAIVDTGTSLMVGPVDEVR Oxidation (M) 2349.0828 0.082826291 536 P07339 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes yes 0 0 1 0 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 63.239 63.12 3 5.0758E-05 19652 20211116_3440_TMUAki_TMT10x_S_F2 68.42 59.819 4435300 7280100 87790 6829600 4753000 7659600 4907400 6053700 6004900 5753400 6033200 4130100 6791400 421800 7011500 4564500 7715800 5003700 6227000 6061900 5631400 5819100 2 2 1 2 2 2 2 2 2 2 2 2628000 4285300 87790 4334600 2803500 5604800 2876600 3837700 3627600 3577500 3595900 2447600 3998800 302160 4437500 2695300 5591800 2937300 3983300 3656400 3504700 3469800 1 1 1 1 1 1 1 1 1 1 1 1807200 2994800 0 2495000 1949500 2054700 2030800 2216000 2377300 2175900 2437300 1682500 2792600 119650 2574000 1869200 2124000 2066400 2243700 2405500 2126700 2349300 1 1 0 1 1 1 1 1 1 1 1 965670000 423310000 542370000 3950 536 3694 22296;22297 26824;26825 26825 461 2 EGCEAIVDTGTSLMVGPVDEVR Unmodified 2333.0879 0.087911669 536 P07339 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 73.489 73.176 3 2.7789E-05 26504 20211116_3441_TMUAki_TMT10x_S_F3 71.202 63.363 2209300 3875200 22815 3397600 2855300 2479800 2764600 2165000 2163000 2352700 2888900 2057200 3614200 213470 3486100 2736900 2575800 2790400 2222700 2252500 2290000 2764400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2209300 3875200 22815 3397600 2855300 2479800 2764600 2165000 2163000 2352700 2888900 2057200 3614200 213470 3486100 2736900 2575800 2790400 2222700 2252500 2290000 2764400 2 2 2 2 2 2 2 2 2 2 2 368770000 0 368770000 3951 536 3694 22298;22299;22300 26826;26827;26828;26829 26829 4 EGCTEVSLLR Unmodified 1162.5652 0.56522259 1874 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 2 3 42.74 42.653 2 9.8412E-11 14148 20211116_3441_TMUAki_TMT10x_S_F3 200.07 78.086 4886600 7094600 21216 9818500 11149000 8927900 5512900 6594900 7157300 5883000 7271000 4549600 6630200 451660 9810800 10546000 9097700 5937500 6801700 7213400 5775000 7010600 3 3 2 3 3 3 3 3 3 3 3 2973800 4262500 15209 5874800 9479200 7479800 3889600 3886000 4397300 3567600 4232700 2768500 3983400 290880 5903400 8945500 7440200 4253400 4122800 4445400 3497400 4088200 2 2 1 2 2 2 2 2 2 2 2 1912800 2832000 6007.1 3943700 1669700 1448100 1623300 2709000 2760000 2315400 3038300 1781100 2646700 160780 3907400 1600200 1657500 1684200 2678900 2768000 2277600 2922300 1 1 1 1 1 1 1 1 1 1 1 698430000 454880000 243550000 3952 1874 3695 22301;22302;22303;22304;22305 26830;26831;26832;26833 26832 4 EGDGVYYNELETR Unmodified 1543.6791 0.67906638 2207 Q8N7H5;Q8N7H5-3;Q8N7H5-2 PAF1 RNA polymerase II-associated factor 1 homolog yes no 0 0 0 0 By MS/MS 1 0 1 1 45.824 45.824 2 3.1037E-18 12328 20211116_3428_TMUAki_TMT10x_P_F1 156.36 127.62 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3953 2207 3696 22306 26834 26834 1 EGDIIPPLTGATPPLIGHLK Unmodified 2038.1463 0.14627689 1573 Q12888;Q12888-3;Q12888-2 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 74.263 74.264 3 4.6012E-09 25836 20211116_3446_TMUAki_TMT10x_S_F7 108.14 82.823 2768000 4807800 29733 4683600 3727400 3549900 3644400 3306400 3460700 3718500 3770700 2577400 4485700 252960 4769900 3572500 3680800 3695300 3386300 3539700 3614700 3627900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2768000 4807800 29733 4683600 3727400 3549900 3644400 3306400 3460700 3718500 3770700 2577400 4485700 252960 4769900 3572500 3680800 3695300 3386300 3539700 3614700 3627900 2 2 1 2 2 2 2 2 2 2 2 1189200000 0 1189200000 3954 1573 3697 22307;22308 26835;26836 26835 2 EGDIVKR Unmodified 815.45012 0.45011648 805 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 1 By matching By MS/MS 2.5 0.5 1 1 1 1 29.715 29.469 3 0.053445 8865 20211116_3441_TMUAki_TMT10x_S_F3 55.676 18.118 228780 390400 0 246090 341140 353150 339700 306760 270390 269920 347130 213010 363750 19845 262840 327020 352120 342500 313130 280830 265130 332490 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 228780 390400 0 246090 341140 353150 339700 306760 270390 269920 347130 213010 363750 19845 262840 327020 352120 342500 313130 280830 265130 332490 1 1 0 1 1 1 1 1 1 1 1 9359800 2149900 7209900 3955 805 3698 22309;22310 26837 26837 1 EGDQTSNNIPADIVFVLK Unmodified 1958.9949 0.99492121 804 P25685;P25685-2 DNAJB1 DnaJ homolog subfamily B member 1 yes no 0 0 0 0 By matching By MS/MS 3.5 1.12 1 1 1 1 1 3 79.112 79.081 3 6.5333E-05 28869 20211116_3441_TMUAki_TMT10x_S_F3 78.021 60.532 6705300 10727000 91423 10037000 8469300 8548500 10054000 6969800 6337200 7452500 8772600 6244000 10007000 665830 10266000 8166100 8765000 10000000 7180500 6696100 7258600 8387200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6705300 10727000 91423 10037000 8469300 8548500 10054000 6969800 6337200 7452500 8772600 6244000 10007000 665830 10266000 8166100 8765000 10000000 7180500 6696100 7258600 8387200 2 2 2 2 2 2 2 2 2 2 2 2678000000 579180000 2098800000 3956 804 3699 22311;22312;22313;22314 26838;26839 26838 2 EGDREAIVAALLTR Unmodified 1512.826 0.82600539 2476 Q96GQ7 DDX27 Probable ATP-dependent RNA helicase DDX27 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.816 1 1 1 1 2 60.091 60.088 3 0.001844 17632 20211116_3444_TMUAki_TMT10x_S_F5 66.939 41.502 2938200 4797300 116390 5062000 2833500 2967900 2705800 3691700 3222100 3672000 4545800 2736600 4477300 350610 5114100 2720800 3168900 2767200 3716400 3302300 3587100 4344200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2938200 4797300 116390 5062000 2833500 2967900 2705800 3691700 3222100 3672000 4545800 2736600 4477300 350610 5114100 2720800 3168900 2767200 3716400 3302300 3587100 4344200 1 1 1 1 1 1 1 1 1 1 1 1063200000 0 1063200000 3957 2476 3700 22315;22316;22317 26840;26841 26841 2 EGDVLTLLESER Unmodified 1359.6882 0.6881745 1374 P62857 RPS28 40S ribosomal protein S28 yes yes 0 0 0 0 By MS/MS By MS/MS 2.29 1.03 4 4 4 2 7 7 71.988 71.836 2;3 1.0935E-30 22808 20211116_3428_TMUAki_TMT10x_P_F1 270.36 223.93 68150000 110180000 39597 100040000 66391000 103140000 74459000 64778000 65691000 72995000 79103000 63448000 102770000 4429600 102820000 63810000 104020000 74834000 68043000 67689000 70953000 75893000 14 14 3 14 14 14 14 14 14 14 14 41501000 64668000 35698 58437000 42824000 75815000 45545000 38465000 39337000 43182000 46181000 38638000 60319000 3017100 60315000 41101000 75324000 45864000 41134000 40533000 41979000 44337000 8 8 2 8 8 8 8 8 8 8 8 26649000 45512000 3899.1 41605000 23567000 27326000 28914000 26313000 26354000 29814000 32923000 24810000 42453000 1412500 42506000 22709000 28696000 28970000 26909000 27156000 28973000 31556000 6 6 1 6 6 6 6 6 6 6 6 33390000000 18735000000 14655000000 3958 1374 3701 22318;22319;22320;22321;22322;22323;22324;22325;22326;22327;22328;22329;22330;22331 26842;26843;26844;26845;26846;26847;26848;26849;26850;26851;26852;26853;26854;26855;26856;26857 26842 16 EGDVLTLLESEREAR Unmodified 1715.869 0.86899241 1374 P62857 RPS28 40S ribosomal protein S28 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 61.711 61.573 3 5.0802E-07 20750 20211116_3439_TMUAki_TMT10x_S_F1 117.13 98.302 52017000 96747000 103340 63829000 45389000 88826000 67977000 69341000 82081000 72104000 78463000 48431000 90152000 3910100 67494000 44069000 88510000 68208000 71567000 82758000 70307000 75802000 4 4 1 3 4 3 4 3 4 3 4 49594000 92211000 0 63829000 45101000 88826000 60977000 69341000 74999000 72104000 70993000 46173000 85937000 3642700 67494000 43618000 88510000 61456000 71567000 75543000 70307000 68608000 3 3 0 3 3 3 3 3 3 3 3 2423800 4535400 103340 0 287570 0 6999700 0 7082200 0 7470300 2257600 4215100 267340 0 450740 0 6751700 0 7215100 0 7194300 1 1 1 0 1 0 1 0 1 0 1 7592400000 4251000000 3341400000 3959 1374 3702 22332;22333 26858;26859;26860;26861 26861 4 EGDVLTPEQAR Unmodified 1213.5939 0.59388018 3154 Q9UKD2 MRTO4 mRNA turnover protein 4 homolog yes yes 0 0 0 0 By MS/MS 2 0 1 1 31.629 31.677 2 0.0085776 6860 20211116_3440_TMUAki_TMT10x_S_F2 65.305 50.788 13259 17470 0 21292 7536 4376.4 9911 12198 18957 8716.4 17347 12346 16316 0 21199 7285.5 5677.5 10209 11903 18833 8656.3 16783 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13259 17470 0 21292 7536 4376.4 9911 12198 18957 8716.4 17347 12346 16316 0 21199 7285.5 5677.5 10209 11903 18833 8656.3 16783 1 1 0 1 1 1 1 1 1 1 1 906880 0 906880 3960 3154 3703 22334 26862 26862 1 EGDYVLFHHEGGVDVGDVDAK Unmodified 2257.0287 0.028740531 1200 P53396;P53396-2 ACLY ATP-citrate synthase yes no 0 0 0 0 By MS/MS By MS/MS 2.92 1.44 3 2 2 3 2 6 6 52.997 52.942 3;4 3.1371E-26 17238 20211116_3430_TMUAki_TMT10x_P_F3 163.66 145.6 153270000 274390000 1929400 285810000 231400000 264740000 169140000 233920000 229200000 214390000 217830000 142720000 256080000 12302000 290450000 220350000 270300000 176680000 238810000 230140000 210190000 210490000 21 21 14 21 21 21 21 21 21 21 21 79996000 137220000 1050100 144180000 156840000 196840000 106850000 117680000 114160000 106940000 107430000 74483000 128070000 7630800 147390000 149120000 195500000 111230000 123320000 115580000 104880000 103840000 9 9 5 9 9 9 9 9 9 9 9 73278000 137170000 879370 141620000 74559000 67892000 62285000 116240000 115030000 107450000 110400000 68235000 128010000 4670700 143060000 71230000 74798000 65453000 115480000 114550000 105300000 106650000 12 12 9 12 12 12 12 12 12 12 12 20943000000 13025000000 7917800000 3961 1200 3704 22335;22336;22337;22338;22339;22340;22341;22342;22343;22344;22345;22346 26863;26864;26865;26866;26867;26868;26869;26870;26871;26872;26873;26874;26875;26876;26877;26878;26879;26880;26881;26882;26883;26884 26868 22 EGEEAGPGDPLLEAVPK Unmodified 1706.8363 0.8362953 1851 Q16543 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.943 2 1 1 2 63.045 62.809 3 6.1633E-11 21296 20211116_3439_TMUAki_TMT10x_S_F1 125.89 98.244 11788000 20017000 142760 20827000 12548000 14523000 11764000 11862000 11759000 12040000 14286000 10977000 18681000 1121000 21096000 12021000 15124000 11973000 12200000 12053000 11752000 13703000 3 3 3 3 3 3 3 3 3 3 3 3761400 6146400 57723 6215500 4395700 6517300 4481500 3455900 3552600 3727200 4238200 3502700 5735500 374520 6340500 4220400 6552000 4512500 3676400 3679100 3629000 4067200 1 1 1 1 1 1 1 1 1 1 1 8027100 13871000 85035 14612000 8152500 8005400 7282100 8405600 8206500 8312800 10048000 7474700 12946000 746510 14755000 7800200 8571900 7460600 8523300 8373600 8122600 9636000 2 2 2 2 2 2 2 2 2 2 2 2023700000 943840000 1079800000 3962 1851 3705 22347;22348;22349 26885;26886;26887 26886 3 EGEFVAQFK Unmodified 1053.5131 0.51311067 3217 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 0 0 By MS/MS By MS/MS 4.33 1.18 1 2 3 4 2 6 6 55.525 55.545 2;3 2.3436E-05 15755 20211116_3444_TMUAki_TMT10x_S_F5 156.01 108.35 75922000 115760000 352680 140910000 125020000 111480000 80282000 84299000 81801000 81842000 99612000 70690000 108110000 6947400 141540000 118740000 114770000 83820000 87007000 83784000 80032000 95540000 9 9 3 9 9 9 9 9 9 9 9 39128000 57548000 0 69330000 86369000 82564000 45598000 41065000 40885000 40092000 48986000 36430000 53742000 3588700 70094000 81769000 82362000 48238000 43818000 42087000 39196000 47004000 4 4 0 4 4 4 4 4 4 4 4 36794000 58213000 352680 71581000 38646000 28913000 34684000 43233000 40917000 41750000 50626000 34261000 54369000 3358700 71442000 36974000 32408000 35582000 43190000 41697000 40836000 48537000 5 5 3 5 5 5 5 5 5 5 5 9242400000 4652600000 4589800000 3963 3217 3706 22350;22351;22352;22353;22354;22355;22356;22357;22358;22359;22360;22361 26888;26889;26890;26891;26892;26893;26894;26895;26896;26897;26898;26899;26900 26898 13 EGFDALDPFIPILVSNYNPK Unmodified 2248.1416 0.14158544 1152 P51398;P51398-2;P51398-3 DAP3 28S ribosomal protein S29, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 6 1.63 1 1 1 2 2 2 5 4 82.063 82.065 3 3.0541E-18 26944 20211116_3445_TMUAki_TMT10x_S_F6 146.69 134.63 15095000 22998000 164050 26515000 11619000 14071000 14404000 5373800 5908800 6542100 13347000 14056000 21472000 1325400 26615000 11219000 14907000 14202000 5937600 6646800 6341300 12645000 10 10 7 10 10 10 10 10 10 10 10 7909700 11915000 117510 13575000 4409500 7282900 5210500 2882500 3183900 3484500 6721800 7365400 11124000 691580 13637000 4253700 7708500 5180600 3170800 3453300 3378300 6374700 5 5 3 5 5 5 5 5 5 5 5 7185200 11083000 46538 12940000 7209500 6788300 9193500 2491300 2724800 3057600 6624800 6690500 10348000 633800 12978000 6965200 7198400 9021400 2766800 3193500 2962900 6270000 5 5 4 5 5 5 5 5 5 5 5 2922200000 1504900000 1417400000 3964 1152 3707 22362;22363;22364;22365;22366;22367;22368;22369;22370 26901;26902;26903;26904;26905;26906;26907;26908;26909;26910 26907 10 EGFHFEETLTGFK Unmodified 1540.7198 0.71980898 2466 Q96G03;Q96G03-2 PGM2 Phosphoglucomutase-2 yes no 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 2 3 63.933 63.949 3 4.6223E-06 19580 20211116_3445_TMUAki_TMT10x_S_F6 98.942 87.328 27731000 43558000 284870 44639000 30281000 35333000 28732000 27122000 25206000 27366000 32707000 25823000 40648000 2576700 45324000 29011000 36384000 29116000 27997000 26063000 26717000 31319000 4 4 2 4 4 4 4 4 4 4 4 10490000 16331000 12760 16170000 11303000 20312000 12192000 11376000 10609000 11389000 12967000 9766900 15238000 878280 16569000 10860000 20236000 12272000 12018000 10946000 11122000 12436000 2 2 1 2 2 2 2 2 2 2 2 17242000 27227000 272110 28469000 18978000 15020000 16540000 15746000 14597000 15977000 19740000 16056000 25410000 1698400 28754000 18151000 16148000 16845000 15980000 15117000 15595000 18883000 2 2 1 2 2 2 2 2 2 2 2 2497900000 1375400000 1122500000 3965 2466 3708 22371;22372;22373;22374;22375 26911;26912;26913;26914;26915 26915 5 EGFLDTLVVLHR Unmodified 1397.7667 0.76669959 1021 P42771;P42771-4;P42771-2;P42772 CDKN2A;CDKN2B Cyclin-dependent kinase inhibitor 2A;Cyclin-dependent kinase 4 inhibitor B yes no 0 0 0 0 By MS/MS By matching 6 0 2 1 1 69.093 69.029 3 1.4524E-09 21286 20211116_3434_TMUAki_TMT10x_P_F6 155.48 130.63 793130 1277800 22250 1323300 846100 1674400 1090600 889660 878800 945840 952490 738650 1192500 87234 1352000 818770 1666500 1086900 945830 905910 921440 916550 1 1 1 1 1 1 1 1 1 1 1 793130 1277800 22250 1323300 846100 1674400 1090600 889660 878800 945840 952490 738650 1192500 87234 1352000 818770 1666500 1086900 945830 905910 921440 916550 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 629750000 412960000 216790000 3966 1021 3709 22376;22377 26916 26916 1 EGFSIPVSADGFK Unmodified 1352.6612 0.66123147 1122 P49792;Q7Z3J3;Q99666;O14715 RANBP2;RGPD4;RGPD5;RGPD8 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 no no 0 0 0 0 By MS/MS 6 0 2 2 68.575 68.539 2;3 3.1931E-05 21058 20211116_3434_TMUAki_TMT10x_P_F6 88.155 62.496 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3967 1122 3710 22378;22379 26917;26918 26917 2 EGFVEYTEQVVK Unmodified 1426.698 0.6980109 84 O00410;O00410-2;O00410-3;O60518 IPO5;RANBP6 Importin-5;Ran-binding protein 6 yes no 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 63.866 63.786 2;3 2.8575E-16 22801 20211116_3441_TMUAki_TMT10x_S_F3 199.68 163.15 13197000 20845000 60287 23798000 12457000 15961000 12996000 9872900 10592000 11529000 14365000 12288000 19462000 1030000 23953000 11955000 16606000 13080000 10395000 11015000 11192000 13741000 4 4 2 4 4 4 4 4 4 4 4 6633300 10110000 28390 11320000 7622000 10726000 6988800 5148600 5530600 5939000 6899900 6175800 9437800 506980 11454000 7288700 10838000 7077000 5539900 5738800 5767700 6613700 2 2 1 2 2 2 2 2 2 2 2 6564200 10736000 31897 12478000 4835400 5234700 6007100 4724300 5061700 5590300 7465400 6111900 10024000 522990 12498000 4666000 5768100 6002700 4855000 5276000 5424100 7127200 2 2 1 2 2 2 2 2 2 2 2 1341400000 987080000 354360000 3968 84 3711 22380;22381;22382;22383;22384 26919;26920;26921;26922;26923;26924 26923 6 EGGAGGGFGSPMDIFDMFFGGGGR Oxidation (M) 2337.9783 0.97830164 889 P31689;P31689-2 DNAJA1 DnaJ homolog subfamily A member 1 yes no 0 0 1 0 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 82.875 82.884 3 1.093E-07 27502 20211116_3436_TMUAki_TMT10x_P_F8 90.193 81.02 2006400 3228800 26508 3178300 2288300 2689900 2396500 1759200 1751800 2071300 2424200 1868300 3012600 192460 3238700 2198300 2749500 2405300 1845000 1834300 2010100 2317800 5 5 4 5 5 5 5 5 5 5 5 832260 1245100 11350 1204400 800230 1336700 851730 735080 756500 860030 985970 775000 1161700 79129 1233600 769280 1340100 858300 781490 781920 834800 944020 2 2 2 2 2 2 2 2 2 2 2 1174100 1983700 15159 1973900 1488100 1353200 1544800 1024200 995320 1211300 1438300 1093300 1850900 113330 2005100 1429000 1409400 1547000 1063500 1052300 1175300 1373700 3 3 2 3 3 3 3 3 3 3 3 349210000 115420000 233790000 3969 889 3712 22385;22386;22387;22388;22389;22390 26925;26926;26927;26928;26929;26930 26927 1076;1077 6 EGGAGGGFGSPMDIFDMFFGGGGR 2 Oxidation (M) 2353.9732 0.97321626 889 P31689;P31689-2 DNAJA1 DnaJ homolog subfamily A member 1 yes no 0 0 2 0 By MS/MS By MS/MS 7.25 0.661 1 4 3 3 5 81.252 81.266 2;3 1.3967E-07 28714 20211116_3446_TMUAki_TMT10x_S_F7 89.04 81.048 8186400 13476000 66224 11330000 9038900 12691000 9944800 10702000 11465000 10704000 10819000 7622500 12567000 705840 11730000 8690600 12800000 10087000 10981000 11574000 10454000 10457000 8 8 5 8 8 8 8 8 8 8 8 2871500 4440800 0 3530500 2180600 4628200 2625300 3388700 3601000 3321600 3268500 2673300 4140400 181870 3682400 2099000 4619300 2669900 3505900 3608900 3246800 3163300 3 3 0 3 3 3 3 3 3 3 3 5314800 9035200 66224 7799100 6858300 8063300 7319500 7313000 7863600 7382200 7550500 4949100 8426200 523970 8047700 6591600 8181200 7417200 7475300 7964900 7207000 7293300 5 5 5 5 5 5 5 5 5 5 5 2925000000 1106900000 1818100000 3970 889 3712 22391;22392;22393;22394;22395;22396;22397;22398 26931;26932;26933;26934;26935;26936;26937;26938 26935 1076;1077 8 EGGDFVCCALSPR Unmodified 1466.6282 0.62823356 1881 Q2TAY7;Q2TAY7-2 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 4 0 4 2 2 51.841 52.007 2;3 4.2349E-18 15621 20211116_3442_TMUAki_TMT10x_S_F4 153.25 145.77 2642300 4543300 0 4459400 5337600 6720500 4041700 3938900 3036100 2974100 3699200 2460200 4239100 253380 4589000 5085100 6644400 4136300 4116300 3156300 2944400 3547900 1 1 0 1 1 1 1 1 1 1 1 2642300 4543300 0 4459400 5337600 6720500 4041700 3938900 3036100 2974100 3699200 2460200 4239100 253380 4589000 5085100 6644400 4136300 4116300 3156300 2944400 3547900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 529760000 529760000 0 3971 1881 3713 22399;22400;22401;22402 26939;26940;26941;26942 26941 4 EGGGDSSASSPTEEEQEQGEIGACSDEGTAQEGK Unmodified 3412.3605 0.36045353 1087 P49006 MARCKSL1 MARCKS-related protein yes yes 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 40.144 40.06 4 7.9344E-74 10010 20211116_3428_TMUAki_TMT10x_P_F1 228.55 226.1 1452100 2475200 20595 7976800 14956000 5743900 2753000 2188700 6483200 1185700 5684900 1352000 2330200 253270 7715700 14033000 5909300 3546100 2374700 6404000 1199400 5508700 6 6 3 6 6 6 6 6 6 6 6 801990 1207300 15595 3749800 14394000 5384000 2190000 1194400 3127000 728530 2770800 746600 1136000 240730 3670300 13494000 5289900 2888500 1411900 3127600 730710 2683900 4 4 2 4 4 4 4 4 4 4 4 650160 1267900 4999.7 4227000 562240 359860 563060 994260 3356200 457190 2914100 605400 1194200 12544 4045400 539430 619390 657560 962800 3276400 468640 2824800 2 2 1 2 2 2 2 2 2 2 2 1390500000 1142200000 248380000 3972 1087 3714 22403;22404;22405;22406 26943;26944;26945;26946;26947;26948 26943 6 EGGIDMDAFQEREEGHAGPDDNEEVMR 2 Oxidation (M) 3064.2411 0.24107086 847 P29083 GTF2E1 General transcription factor IIE subunit 1 yes yes 0 0 2 1 By MS/MS By MS/MS 1 0 2 1 1 36.524 36.494 4 4.6313E-06 8591 20211116_3428_TMUAki_TMT10x_P_F1 74.382 72.1 220960 333070 1858.6 478330 423050 364250 221470 292980 387150 241910 348020 205730 311340 20079 476010 400500 376510 240310 299950 385220 238370 336940 2 2 1 2 2 2 2 2 2 2 2 128880 197180 0 263200 363650 318550 179290 171870 216950 146080 189380 119980 184240 11171 264670 343870 317810 192670 181380 218090 143730 183540 1 1 0 1 1 1 1 1 1 1 1 92076 135890 1858.6 215130 59395 45701 42175 121110 170200 95833 158640 85745 127100 8908.2 211340 56630 58703 47644 118570 167130 94637 153400 1 1 1 1 1 1 1 1 1 1 1 95089000 48087000 47002000 3973 847 3715 22407;22408 26949;26950 26949 1015;1016 2 EGGLGPLNIPLLADVTR Unmodified 1733.9676 0.96758424 899 P32119 PRDX2 Peroxiredoxin-2 yes yes 0 0 0 0 By MS/MS By MS/MS 6.55 1.38 3 5 4 7 10 18 11 70.332 70.348 2;3 1.8114E-69 25661 20211116_3434_TMUAki_TMT10x_P_F6 304.37 245.12 74815000 117820000 109270 118910000 74833000 89206000 87261000 50926000 52676000 60225000 81439000 69653000 109940000 5157400 120780000 72011000 91849000 86792000 53988000 56122000 58436000 77671000 26 26 6 26 26 26 26 26 26 26 26 37058000 56046000 7078 56853000 30330000 50791000 35688000 24669000 26475000 28967000 37981000 34500000 52300000 2368700 57852000 29177000 51529000 35635000 26529000 27745000 28114000 36282000 17 17 4 17 17 17 17 17 17 17 17 37757000 61773000 102190 62055000 44503000 38415000 51573000 26257000 26200000 31257000 43458000 35154000 57642000 2788700 62933000 42834000 40320000 51158000 27460000 28377000 30322000 41389000 9 9 2 9 9 9 9 9 9 9 9 45835000000 17299000000 28536000000 3974 899 3716 22409;22410;22411;22412;22413;22414;22415;22416;22417;22418;22419;22420;22421;22422;22423;22424;22425;22426;22427;22428;22429;22430;22431;22432;22433;22434;22435;22436;22437 26951;26952;26953;26954;26955;26956;26957;26958;26959;26960;26961;26962;26963;26964;26965;26966;26967;26968;26969;26970;26971;26972;26973;26974;26975;26976;26977;26978;26979;26980;26981;26982;26983 26956 33 EGGLGPLNIPLLADVTRR Unmodified 1890.0687 0.068695273 899 P32119 PRDX2 Peroxiredoxin-2 yes yes 0 0 0 1 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 77.367 77.336 3 7.2866E-41 27108 20211116_3439_TMUAki_TMT10x_S_F1 212.41 174.82 32618000 54819000 536940 56085000 35405000 49640000 38125000 36433000 33185000 35272000 40557000 30374000 51157000 3153100 57030000 34043000 50671000 38377000 37675000 34238000 34496000 38896000 7 7 6 7 7 7 7 7 7 7 7 18874000 32502000 335870 33269000 18002000 34289000 21702000 21574000 19167000 20907000 23491000 17575000 30330000 1775100 33901000 17369000 34583000 21742000 22556000 19764000 20446000 22527000 4 4 3 4 4 4 4 4 4 4 4 13744000 22317000 201060 22816000 17403000 15351000 16423000 14860000 14017000 14365000 17066000 12798000 20826000 1378100 23129000 16674000 16088000 16635000 15118000 14474000 14050000 16369000 3 3 3 3 3 3 3 3 3 3 3 8495000000 4209500000 4285500000 3975 899 3717 22438;22439;22440;22441;22442;22443 26984;26985;26986;26987;26988;26989;26990 26988 7 EGGLLTLAGAK Unmodified 1028.5866 0.58660996 573 P09417;P09417-2 QDPR Dihydropteridine reductase yes no 0 0 0 0 By MS/MS 7 0 1 1 58.562 59.294 2 0.00035661 19082 20211116_3435_TMUAki_TMT10x_P_F7 93.325 60.512 9235800 14170000 28082 16495000 14817000 20715000 11971000 12832000 12701000 12080000 12630000 8599700 13231000 870060 16727000 14138000 20665000 12314000 13422000 12887000 11828000 12186000 1 1 1 1 1 1 1 1 1 1 1 9235800 14170000 28082 16495000 14817000 20715000 11971000 12832000 12701000 12080000 12630000 8599700 13231000 870060 16727000 14138000 20665000 12314000 13422000 12887000 11828000 12186000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 320000000 320000000 0 3976 573 3718 22444 26991 26991 1 EGGQYGLVAACAAGGQGHAMIVEAYPK Oxidation (M) 2720.2687 0.26867 1237 P55084;P55084-2 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 0 0 1 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 53.625 53.862 4 0.00037616 17405 20211116_3446_TMUAki_TMT10x_S_F7 61.732 52.912 11283000 20071000 493620 21300000 13541000 13932000 11407000 11838000 11224000 11708000 14885000 10510000 18733000 1405100 21533000 12958000 14601000 11677000 12138000 11556000 11440000 14246000 4 4 3 4 4 4 4 4 4 4 4 1889200 3568000 166300 3568600 3257800 4280900 2830600 2083300 1937500 1925200 2493500 1760200 3329300 330780 3651100 3123000 4267700 2865900 2224400 2029900 1886700 2388200 1 1 1 1 1 1 1 1 1 1 1 9394300 16503000 327320 17732000 10283000 9651200 8576600 9754300 9286100 9782900 12392000 8749300 15403000 1074300 17882000 9835100 10333000 8810800 9913200 9526200 9553300 11858000 3 3 2 3 3 3 3 3 3 3 3 2492000000 915340000 1576600000 3977 1237 3719 22445;22446;22447 26992;26993;26994;26995 26995 1677 4 EGGQYGLVAACAAGGQGHAMIVEAYPK Unmodified 2704.2738 0.27375538 1237 P55084;P55084-2 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 0 0 0 0 By MS/MS 7 0 1 1 58.795 59.311 3 3.9668E-18 19659 20211116_3446_TMUAki_TMT10x_S_F7 134.97 126.26 2668700 4499600 51260 4847700 3230400 1994100 2688500 1132900 966740 1340800 2591500 2485200 4199900 276890 4878200 3086900 2188100 2702100 1201600 1116500 1300900 2449600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2668700 4499600 51260 4847700 3230400 1994100 2688500 1132900 966740 1340800 2591500 2485200 4199900 276890 4878200 3086900 2188100 2702100 1201600 1116500 1300900 2449600 2 2 2 2 2 2 2 2 2 2 2 543950000 0 543950000 3978 1237 3719 22448 26996;26997 26996 2 EGGSIPVTLTFQEATGK Unmodified 1733.8836 0.88357984 2511 Q96KP4;Q96KP4-2 CNDP2 Cytosolic non-specific dipeptidase yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 3 3 2 4 67.642 67.651 2;3 6.5621E-67 20789 20211116_3444_TMUAki_TMT10x_S_F5 275.35 249.92 25070000 42091000 136330 41367000 28699000 33759000 29141000 28035000 27093000 27913000 32366000 23341000 39272000 1969300 42138000 27518000 34732000 29473000 28789000 27839000 27266000 31060000 7 7 3 7 7 7 7 7 7 7 7 9309000 14720000 123010 14877000 10745000 17655000 11661000 10555000 9793100 10237000 11525000 8668400 13736000 882810 15208000 10332000 17655000 11723000 11080000 10106000 10011000 11064000 3 3 2 3 3 3 3 3 3 3 3 15761000 27370000 13322 26489000 17953000 16104000 17480000 17480000 17300000 17676000 20841000 14673000 25536000 1086400 26931000 17186000 17077000 17750000 17709000 17733000 17255000 19995000 4 4 1 4 4 4 4 4 4 4 4 2550900000 1415200000 1135800000 3979 2511 3720 22449;22450;22451;22452;22453;22454 26998;26999;27000;27001;27002;27003;27004;27005;27006 27003 9 EGGVIVDYHGCDFFPER Unmodified 1995.8785 0.87851124 3280 Q9Y3D8;Q9Y3D8-2 AK6 Adenylate kinase isoenzyme 6 yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 59.133 59.006 3 1.8209E-15 18078 20211116_3431_TMUAki_TMT10x_P_F4 146.3 129.42 8029400 13445000 17131 13859000 10674000 11361000 9235300 9915300 9021800 9603000 10751000 7476000 12548000 680990 14072000 10198000 11695000 9436400 10145000 9248900 9391700 10318000 3 3 1 3 3 3 3 3 3 3 3 2653600 4254700 0 4363900 3780400 5783200 3408700 3231500 2545900 3134100 3380900 2470700 3970500 235510 4465400 3615500 5746600 3450300 3411400 2657400 3064900 3235600 1 1 0 1 1 1 1 1 1 1 1 5375900 9190700 17131 9495300 6893900 5577300 5826700 6683700 6476000 6469000 7370200 5005300 8577000 445490 9606700 6582000 5948400 5986100 6733300 6591500 6326800 7082100 2 2 1 2 2 2 2 2 2 2 2 1439500000 502940000 936540000 3980 3280 3721 22455;22456;22457 27007;27008;27009 27007 3 EGHQVALLSGEMMVEQR 2 Oxidation (M) 1944.9033 0.90334578 2959 Q9NUU7;Q9UMR2;Q9UMR2-2;Q9UMR2-4;Q9NUU7-2;Q9UMR2-3 DDX19A;DDX19B ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B yes no 0 0 2 0 By MS/MS By MS/MS 2.75 1.48 1 1 1 1 1 3 36.918 36.824 3 1.9928E-05 11655 20211116_3441_TMUAki_TMT10x_S_F3 87.323 75.883 497510 782120 10354 935440 834800 840330 543940 862950 817950 657420 822440 463280 730370 52656 942050 793570 862450 575430 870100 820290 650540 793240 3 3 2 3 3 3 3 3 3 3 3 192070 308420 8989 378540 524060 545460 263370 340070 300200 272550 351430 178910 288050 28951 383720 496490 540770 281920 354110 305610 268970 337420 1 1 1 1 1 1 1 1 1 1 1 305440 473700 1365.5 556890 310740 294870 280560 522880 517750 384880 471020 284380 442330 23705 558330 297080 321680 293510 515990 514690 381580 455820 2 2 1 2 2 2 2 2 2 2 2 265730000 127260000 138470000 3981 2959 3722 22458;22459;22460;22461 27010;27011;27012 27012 3045;3046 3 EGHQVALLSGEMMVEQR Oxidation (M) 1928.9084 0.90843116 2959 Q9NUU7;Q9UMR2;Q9UMR2-2;Q9UMR2-4;Q9NUU7-2;Q9UMR2-3 DDX19A;DDX19B ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B yes no 0 0 1 0 By MS/MS By matching 3.25 0.433 3 1 2 2 43.872 43.862 3 0.0028581 13857 20211116_3430_TMUAki_TMT10x_P_F3 59.689 51.965 1288300 2076700 24654 2497400 3229900 2874200 1914600 1619200 1518400 1353900 1860200 1199700 1939300 153390 2523700 3065200 2876600 1998600 1701700 1574200 1333300 1783900 3 3 2 3 3 3 3 3 3 3 3 1288300 2076700 24654 2497400 3229900 2874200 1914600 1619200 1518400 1353900 1860200 1199700 1939300 153390 2523700 3065200 2876600 1998600 1701700 1574200 1333300 1783900 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 283710000 151090000 132620000 3982 2959 3722 22462;22463;22464;22465 27013;27014;27015 27014 3045;3046 3 EGIILFK Unmodified 818.49019 0.49019038 509 P05455 SSB Lupus La protein yes yes 0 0 0 0 By MS/MS By MS/MS 5.83 1.07 1 1 2 2 4 2 63.857 64.081 2 0.0050599 20401 20211116_3433_TMUAki_TMT10x_P_F5 110.35 13.383 67659000 106760000 899460 133490000 77532000 103160000 55058000 63592000 68975000 71026000 86129000 63003000 99720000 6542500 133840000 73828000 106070000 57454000 66876000 70170000 69061000 82554000 6 6 5 6 6 6 6 6 6 6 6 30337000 46787000 673970 61101000 45766000 72782000 21227000 27873000 31374000 31829000 37332000 28252000 43711000 3359400 61497000 43307000 72416000 23128000 30724000 31685000 30922000 35828000 3 3 3 3 3 3 3 3 3 3 3 37322000 59974000 225490 72393000 31766000 30378000 33832000 35720000 37600000 39197000 48797000 34751000 56009000 3183100 72348000 30521000 33658000 34326000 36152000 38484000 38139000 46726000 3 3 2 3 3 3 3 3 3 3 3 5063400000 2904900000 2158500000 3983 509 3723 22466;22467;22468;22469;22470;22471 27016;27017;27018;27019;27020;27021 27016 6 EGILPERAEEAK Unmodified 1340.6936 0.69359423 243 O43768;O43768-3;O43768-6;O43768-5;O43768-2;O43768-9;O43768-7;O43768-4;O43768-8 ENSA Alpha-endosulfine yes no 0 0 0 1 By MS/MS By MS/MS 2.4 1.02 1 2 1 1 3 2 38.097 38.021 3 2.6026E-06 12229 20211116_3441_TMUAki_TMT10x_S_F3 116.51 73.668 5884000 9112500 119100 11444000 20015000 13236000 7742200 7913200 10074000 6557700 9496400 5479200 8511700 764050 11537000 18888000 13254000 8567200 8273600 10126000 6460400 9178700 6 6 5 6 6 6 6 6 6 6 6 4759400 7307500 109940 9225900 18914000 12341000 6588100 6637700 8333100 5418800 7732500 4432000 6825900 662600 9323000 17830000 12252000 7381100 7000100 8379800 5342500 7477800 4 4 3 4 4 4 4 4 4 4 4 1124600 1805000 9159.3 2217800 1101100 894710 1154100 1275500 1740600 1138900 1763900 1047200 1685800 101450 2213600 1057600 1001600 1186100 1273600 1746000 1117900 1700900 2 2 2 2 2 2 2 2 2 2 2 653140000 519910000 133240000 3984 243 3724 22472;22473;22474;22475;22476 27022;27023;27024;27025;27026 27026 5 EGILSDEIYCPPETAVLLGSYAVQAK Unmodified 2822.4048 0.40481236 682 P15311 EZR Ezrin yes yes 0 0 0 0 By MS/MS By MS/MS 5.64 1.43 1 2 1 4 2 1 4 7 80.227 80.226 3;4 1.8222E-12 25937 20211116_3444_TMUAki_TMT10x_S_F5 114.39 101.07 17495000 29508000 301620 27244000 20223000 25710000 21343000 14840000 13964000 16208000 21056000 16291000 27525000 1638100 27931000 19429000 26042000 21362000 15677000 14780000 15774000 20093000 12 12 7 12 12 12 12 12 12 12 12 8777500 14220000 94749 12801000 7904600 15958000 9431900 7406700 6984500 7972600 10062000 8172800 13263000 729440 13207000 7618600 15870000 9411600 7979100 7321900 7763200 9611300 6 6 4 6 6 6 6 6 6 6 6 8717600 15288000 206870 14443000 12319000 9752200 11911000 7432800 6979400 8235800 10994000 8118000 14262000 908650 14724000 11810000 10172000 11951000 7698300 7458600 8010400 10481000 6 6 3 6 6 6 6 6 6 6 6 9246300000 3364400000 5882000000 3985 682 3725 22477;22478;22479;22480;22481;22482;22483;22484;22485;22486;22487 27027;27028;27029;27030;27031;27032;27033;27034;27035;27036;27037;27038 27036 12 EGIPALDNFLDKL Unmodified 1443.7609 0.76094551 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 1 By MS/MS By MS/MS 4.82 2.06 4 5 6 4 12 6 10 4 31 20 72.702 72.705 2;3 5.5647E-24 28183 20211116_3435_TMUAki_TMT10x_P_F7 224.24 178.63 206720000 329170000 641630 310790000 207900000 262590000 220040000 159410000 155450000 172760000 228250000 192470000 307080000 16316000 317640000 199600000 268160000 220570000 167690000 163550000 168180000 217930000 39 39 17 39 38 39 38 38 38 39 39 102820000 159880000 247040 149900000 91186000 162270000 101230000 78797000 78118000 86523000 112490000 95734000 149150000 7863000 153810000 87653000 162670000 101440000 84559000 81703000 84184000 107450000 22 22 8 22 21 22 21 21 21 22 22 103900000 169290000 394580 160890000 116720000 100320000 118810000 80615000 77331000 86240000 115760000 96738000 157930000 8453200 163820000 111940000 105490000 119120000 83126000 81849000 83995000 110480000 17 17 9 17 17 17 17 17 17 17 17 85531000000 46032000000 39499000000 3986 653 3726 22488;22489;22490;22491;22492;22493;22494;22495;22496;22497;22498;22499;22500;22501;22502;22503;22504;22505;22506;22507;22508;22509;22510;22511;22512;22513;22514;22515;22516;22517;22518;22519;22520;22521;22522;22523;22524;22525;22526;22527;22528;22529;22530;22531;22532;22533;22534;22535;22536;22537;22538 27039;27040;27041;27042;27043;27044;27045;27046;27047;27048;27049;27050;27051;27052;27053;27054;27055;27056;27057;27058;27059;27060;27061;27062;27063;27064;27065;27066;27067;27068;27069;27070;27071;27072;27073;27074;27075;27076;27077;27078;27079;27080;27081;27082;27083;27084;27085;27086;27087;27088;27089;27090;27091 27067 53 EGIPGLYR Unmodified 903.48142 0.48141661 1983 Q6NUK1;Q6NUK1-2 SLC25A24 Calcium-binding mitochondrial carrier protein SCaMC-1 yes no 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 45.692 45.763 2 0.028668 12763 20211116_3431_TMUAki_TMT10x_P_F4 63.48 39.956 1930300 2723600 3836.1 3294900 4421200 4620700 2488700 2579900 2477200 2118200 2903300 1797400 2543500 198500 3340800 4190900 4579700 2625100 2712300 2535800 2087800 2787500 1 1 1 1 1 1 1 1 1 1 1 1930300 2723600 3836.1 3294900 4421200 4620700 2488700 2579900 2477200 2118200 2903300 1797400 2543500 198500 3340800 4190900 4579700 2625100 2712300 2535800 2087800 2787500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 94178000 94178000 0 3987 1983 3727 22539;22540 27092 27092 1 EGIREETVSLR Unmodified 1287.6783 0.67827852 745 P20618 PSMB1 Proteasome subunit beta type-1 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 33.802 33.648 3 6.2774E-06 10457 20211116_3441_TMUAki_TMT10x_S_F3 116.24 68.635 874610 1348000 30469 1504800 1595600 1441300 1118100 1031300 1142900 945600 1291100 814580 1258400 111000 1523100 1519800 1463000 1159800 1066700 1166900 927050 1240900 2 2 2 2 2 2 2 2 2 2 2 399240 622690 21923 716100 1090700 979210 593130 535900 596110 479690 655470 371890 581390 63215 727880 1034600 971360 627740 565560 608410 470810 630470 1 1 1 1 1 1 1 1 1 1 1 475380 725320 8545.4 788690 504910 462120 524930 495420 546800 465910 635650 442690 677040 47790 795230 485160 491670 532090 501140 558470 456240 610440 1 1 1 1 1 1 1 1 1 1 1 46678000 27526000 19152000 3988 745 3728 22541;22542;22543 27093;27094 27094 2 EGISINCGLLALGNVISALGDK Unmodified 2213.1726 0.172568 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4;Q7Z4S6-6 KIF21A Kinesin-like protein KIF21A yes no 0 0 0 0 By MS/MS 2 0 1 1 83.157 83.157 3 5.3125E-20 29025 20211116_3429_TMUAki_TMT10x_P_F2 154.79 136.87 507620 731710 18083 731150 361130 669350 487780 332740 322970 377990 517400 472780 682760 56887 745010 350540 678130 483050 356650 342670 367300 493100 1 1 1 1 1 1 1 1 1 1 1 507620 731710 18083 731150 361130 669350 487780 332740 322970 377990 517400 472780 682760 56887 745010 350540 678130 483050 356650 342670 367300 493100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 69330000 69330000 0 3989 2082 3729 22544 27095 27095 1 EGITTYFSGNCTMEDAK Oxidation (M) 1938.7975 0.79754331 3013 Q9NY33;Q9NY33-4 DPP3 Dipeptidyl peptidase 3 yes no 0 0 1 0 By MS/MS 4 0 1 1 55.075 55.233 3 0.00012216 16530 20211116_3431_TMUAki_TMT10x_P_F4 78.069 67.435 3367900 4785500 0 5562600 4786500 6703100 3864300 3775400 3748600 3444200 3931100 3135400 4468300 251610 5636900 4563300 6692600 3964300 3976400 3825100 3377400 3786500 2 2 0 2 2 2 2 2 2 2 2 3367900 4785500 0 5562600 4786500 6703100 3864300 3775400 3748600 3444200 3931100 3135400 4468300 251610 5636900 4563300 6692600 3964300 3976400 3825100 3377400 3786500 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 649330000 649330000 0 3990 3013 3730 22545 27096;27097 27096 3070 2 EGIVALR Unmodified 756.44939 0.4493882 982 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 0 By MS/MS By MS/MS 3.25 0.433 3 1 2 2 39.034 39.025 2 0.050758 12831 20211116_3441_TMUAki_TMT10x_S_F3 68.7 1.7071 2769100 4408600 29284 4475900 3642900 4038600 3137400 3174100 3406500 3201600 3794500 2578500 4113900 268590 4554900 3482000 4121800 3217200 3271700 3467500 3125700 3648400 4 4 2 4 4 4 4 4 4 4 4 1216400 1801900 0 1850700 1986200 2356700 1466600 1238800 1341600 1294500 1585900 1132500 1681500 111110 1892100 1891400 2344500 1511000 1317600 1379000 1262000 1522300 2 2 0 2 2 2 2 2 2 2 2 1552700 2606700 29284 2625200 1656700 1681900 1670800 1935300 2064900 1907000 2208600 1446000 2432400 157480 2662800 1590600 1777300 1706200 1954100 2088500 1863700 2126100 2 2 2 2 2 2 2 2 2 2 2 183840000 92634000 91211000 3991 982 3731 22546;22547;22548;22549 27098;27099 27099 2 EGIVKQDSLVINLNR Unmodified 1696.9472 0.94718315 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 0 1 By MS/MS By MS/MS 6.57 0.728 4 2 1 3 4 54.563 54.879 3 7.0437E-33 15800 20211116_3445_TMUAki_TMT10x_S_F6 198.95 168.12 43481000 65493000 730340 68926000 51737000 50909000 39298000 53140000 53314000 52155000 54316000 40489000 61125000 4172900 69804000 49324000 53024000 40946000 53887000 53660000 50978000 52366000 4 4 3 4 4 4 4 4 4 4 4 10408000 14904000 0 15033000 14420000 20511000 11248000 12286000 11482000 11858000 12114000 9689500 13908000 690900 15409000 13732000 20373000 11583000 12894000 11693000 11599000 11666000 1 1 0 1 1 1 1 1 1 1 1 33072000 50589000 730340 53893000 37317000 30397000 28050000 40853000 41832000 40297000 42202000 30799000 47217000 3482000 54395000 35593000 32651000 29363000 40993000 41967000 39379000 40699000 3 3 3 3 3 3 3 3 3 3 3 3289500000 1673400000 1616100000 3992 3317 3732 22550;22551;22552;22553;22554;22555;22556 27100;27101;27102;27103;27104;27105;27106 27103 7 EGIVQTEQIR Unmodified 1171.6197 0.619701 1990 Q6P1J9 CDC73 Parafibromin yes yes 0 0 0 0 By MS/MS 2 0 1 1 35.626 35.725 2 0.0060621 8420 20211116_3440_TMUAki_TMT10x_S_F2 74.841 33.959 187010 323080 0 383940 208600 180080 200230 186600 213990 171320 254530 174110 301690 14681 384340 199730 196170 203970 188930 218530 167950 244280 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 187010 323080 0 383940 208600 180080 200230 186600 213990 171320 254530 174110 301690 14681 384340 199730 196170 203970 188930 218530 167950 244280 2 2 0 2 2 2 2 2 2 2 2 4382800 0 4382800 3993 1990 3733 22557 27107;27108 27107 2 EGIVTATEQEVKEDIAK Unmodified 1858.9524 0.95238769 1578 Q12931;Q12931-2 TRAP1 Heat shock protein 75 kDa, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 2.3 1.1 3 3 2 2 5 5 68.529 68.355 3;4 3.0147E-43 21886 20211116_3431_TMUAki_TMT10x_P_F4 230.07 197.7 130270000 210410000 522520 203910000 153850000 213150000 153900000 164390000 148300000 152140000 165060000 121300000 196310000 10986000 208620000 147510000 215480000 155940000 169240000 151710000 149090000 158710000 15 15 8 15 15 15 15 15 15 15 15 78196000 120710000 348680 124470000 92904000 160000000 100520000 97097000 87534000 91467000 98715000 72806000 112650000 6508400 127240000 89261000 159390000 101160000 101730000 90016000 89563000 94881000 8 8 5 8 8 8 8 8 8 8 8 52078000 89699000 173840 79442000 60944000 53152000 53383000 67294000 60768000 60670000 66342000 48490000 83660000 4477600 81375000 58248000 56087000 54772000 67508000 61695000 59526000 63825000 7 7 3 7 7 7 7 7 7 7 7 16568000000 8919700000 7648600000 3994 1578 3734 22558;22559;22560;22561;22562;22563;22564;22565;22566;22567 27109;27110;27111;27112;27113;27114;27115;27116;27117;27118;27119;27120;27121;27122;27123 27115 15 EGKPTIVEEDDPELFK Unmodified 1844.9044 0.90437487 370 O75937 DNAJC8 DnaJ homolog subfamily C member 8 yes yes 0 0 0 1 By MS/MS By MS/MS 3.12 1.17 1 1 3 2 1 5 3 57.974 57.837 3 1.0585E-10 18742 20211116_3429_TMUAki_TMT10x_P_F2 132.13 113.77 75305000 132750000 860260 133670000 118230000 164950000 92972000 167440000 150270000 129850000 128690000 70121000 123880000 7357800 136760000 112760000 166160000 97400000 168990000 149600000 128360000 124810000 12 12 10 12 12 12 12 12 12 12 12 41942000 71441000 410560 70733000 84237000 131780000 70103000 90674000 80692000 72283000 71455000 39053000 66660000 4163900 73122000 80421000 129560000 72176000 93715000 81299000 71353000 69216000 7 7 5 7 7 7 7 7 7 7 7 33363000 61313000 449700 62933000 33990000 33167000 22869000 76762000 69576000 57565000 57239000 31068000 57217000 3193900 63643000 32338000 36604000 25224000 75271000 68300000 57012000 55598000 5 5 5 5 5 5 5 5 5 5 5 7172600000 4666700000 2505900000 3995 370 3735 22568;22569;22570;22571;22572;22573;22574;22575 27124;27125;27126;27127;27128;27129;27130;27131;27132;27133;27134;27135;27136 27124 13 EGLDEVAGIINDAK Unmodified 1442.7253 0.72528829 1672 Q14008;Q14008-2;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 By MS/MS By MS/MS 2.8 0.748 2 2 1 3 2 74.837 74.737 2;3 1.3927E-07 25578 20211116_3429_TMUAki_TMT10x_P_F2 105.19 79.072 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3996 1672 3736 22576;22577;22578;22579;22580 27137;27138;27139;27140;27141 27137 5 EGLEFAVIR Unmodified 1032.5604 0.56039521 3333 Q9Y606;Q9Y606-2 PUS1 tRNA pseudouridine synthase A, mitochondrial yes no 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 58.578 58.326 2 0.056371 20554 20211116_3441_TMUAki_TMT10x_S_F3 54.436 23.875 3254300 5446300 275330 5714300 3885300 3874000 4115100 4423000 4326200 4496700 4766800 3032100 5083000 535240 5783100 3747900 4072400 4168700 4471500 4407600 4388600 4584800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3254300 5446300 275330 5714300 3885300 3874000 4115100 4423000 4326200 4496700 4766800 3032100 5083000 535240 5783100 3747900 4072400 4168700 4471500 4407600 4388600 4584800 1 1 1 1 1 1 1 1 1 1 1 373600000 0 373600000 3997 3333 3737 22581;22582 27142 27142 1 EGLEIVK Unmodified 786.44872 0.4487195 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 47.313 47.301 2 0.0063481 13351 20211116_3431_TMUAki_TMT10x_P_F4 103.92 20.075 16305000 25054000 85775 28185000 23085000 22127000 18584000 17521000 18001000 17003000 21517000 15183000 23390000 1526700 28442000 22027000 22812000 19068000 18031000 18464000 16628000 20647000 5 5 5 5 5 5 5 5 5 5 5 7700000 11307000 12224 12770000 14867000 14819000 9268400 7726700 8062600 8098300 9857500 7169600 10556000 750160 12955000 14116000 14811000 9656800 8225000 8318800 7893900 9453600 2 2 2 2 2 2 2 2 2 2 2 8605500 13747000 73552 15415000 8217800 7308000 9315500 9794600 9938700 8905100 11659000 8013100 12834000 776570 15487000 7911700 8000800 9411000 9806400 10145000 8733800 11194000 3 3 3 3 3 3 3 3 3 3 3 1142800000 650030000 492760000 3998 648 3738 22583;22584;22585;22586 27143;27144;27145;27146;27147 27144 5 EGLELLK Unmodified 800.46437 0.46436956 520 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 0 By MS/MS By MS/MS 3.5 1.12 2 2 2 2 4 4 56.34 56.282 2 0.0056117 16846 20211116_3431_TMUAki_TMT10x_P_F4 107.59 18.951 76628000 109080000 249370 150800000 112520000 102700000 75672000 71743000 86829000 72475000 98457000 71345000 101940000 6448900 150180000 106930000 106890000 79029000 74527000 88258000 70753000 94618000 8 8 4 8 8 8 8 8 8 8 8 39739000 55582000 249370 72717000 86113000 74653000 40220000 37379000 43386000 37817000 49830000 37001000 51928000 3985100 73002000 81418000 75095000 43294000 39899000 44228000 36916000 47870000 5 5 4 5 5 5 5 5 5 5 5 36889000 53495000 0 78086000 26405000 28044000 35452000 34364000 43443000 34658000 48627000 34344000 50008000 2463800 77175000 25517000 31798000 35735000 34629000 44030000 33837000 46748000 3 3 0 3 3 3 3 3 3 3 3 8764600000 4445900000 4318700000 3999 520 3739 22587;22588;22589;22590;22591;22592;22593;22594 27148;27149;27150;27151;27152;27153;27154;27155;27156 27151 9 EGLELPEDEEEK Unmodified 1415.6304 0.63038485 553;544 P07900;P07900-2;Q58FG0;Q58FF6;P08238;Q58FF7 HSP90AA1;HSP90AA5P;HSP90AB4P;HSP90AB1;HSP90AB3P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 no no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 4 4 4 4 50.289 50.125 2;3 2.3172E-38 14334 20211116_3440_TMUAki_TMT10x_S_F2 279.62 252.32 51278000 61920000 1072800 156900000 98701000 68562000 49555000 47532000 69659000 39938000 78106000 47753000 58133000 5849600 152030000 93464000 74822000 53458000 49161000 70286000 39318000 75085000 9 9 6 9 9 9 9 9 9 9 9 25178000 28584000 455510 70256000 85569000 55682000 32381000 23390000 33502000 19366000 35684000 23446000 26828000 3295100 68512000 80734000 56898000 35661000 25291000 34111000 19080000 34355000 5 5 3 5 5 5 5 5 5 5 5 26100000 33336000 617320 86643000 13132000 12879000 17174000 24142000 36157000 20572000 42422000 24306000 31305000 2554500 83522000 12731000 17924000 17797000 23871000 36176000 20238000 40729000 4 4 3 4 4 4 4 4 4 4 4 8651400000 6025600000 2625800000 4000 544;553 3740 22595;22596;22597;22598;22599;22600;22601;22602 27157;27158;27159;27160;27161;27162;27163;27164;27165 27165 9 EGLELPEDEEEKK Unmodified 1543.7253 0.72534787 553;544 P07900;P07900-2;Q58FG0;Q58FF6;P08238;Q58FF7 HSP90AA1;HSP90AA5P;HSP90AB4P;HSP90AB1;HSP90AB3P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 no no 0 0 0 1 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 45.693 45.539 3 1.0514E-11 12220 20211116_3428_TMUAki_TMT10x_P_F1 150.12 113.67 14607000 17881000 124070 45069000 67989000 28802000 17363000 13219000 20913000 10314000 23913000 13601000 16787000 1972100 43814000 63919000 29995000 20369000 14140000 21226000 10193000 22975000 6 6 4 6 6 6 6 6 6 6 6 12023000 14599000 115140 36422000 66690000 27470000 15439000 10913000 17012000 8464500 19685000 11195000 13704000 1767500 35481000 62657000 28165000 18389000 11858000 17333000 8367700 18906000 5 5 3 5 5 5 5 5 5 5 5 2584100 3282000 8931.3 8646400 1299100 1331700 1924200 2305600 3901200 1849500 4228500 2406100 3082500 204570 8332500 1261900 1829700 1980300 2281400 3893900 1825100 4069000 1 1 1 1 1 1 1 1 1 1 1 1483200000 1341600000 141610000 4001 544;553 3741 22603;22604;22605;22606;22607 27166;27167;27168;27169;27170;27171;27172 27166 7 EGLELPEDEEEKKK Unmodified 1671.8203 0.82031088 553;544 P07900;P07900-2;Q58FG0;P08238;Q58FF7 HSP90AA1;HSP90AA5P;HSP90AB1;HSP90AB3P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 no no 0 0 0 2 By MS/MS By MS/MS 3.2 1.17 2 1 1 1 3 2 42.374 42.292 4 1.0469E-09 13968 20211116_3441_TMUAki_TMT10x_S_F3 138.19 106.09 5660500 9178700 95873 9150300 26419000 16472000 9468600 12450000 17610000 9126100 13009000 5271200 8564600 841600 9446300 24911000 16238000 10743000 12761000 17395000 9049900 12692000 4 4 3 4 4 4 4 4 4 4 4 4087000 6625000 76900 6722900 24805000 14322000 7452600 8454700 11989000 6342500 8842200 3805900 6182200 692890 6965200 23352000 13989000 8607200 8829000 11886000 6281500 8627100 3 3 2 3 3 3 3 3 3 3 3 1573500 2553700 18974 2427400 1614000 2150300 2016000 3994900 5621000 2783500 4167000 1465200 2382400 148710 2481100 1558900 2249100 2135500 3932400 5509100 2768500 4064800 1 1 1 1 1 1 1 1 1 1 1 1400700000 1185400000 215340000 4002 544;553 3742 22608;22609;22610;22611;22612 27173;27174;27175;27176 27176 4 EGLISQDGSSLEALLR Unmodified 1686.8788 0.87882882 2364 Q92785;Q92785-2 DPF2 Zinc finger protein ubi-d4 yes no 0 0 0 0 By matching By MS/MS 3.33 0.471 2 1 1 2 77.224 77.141 3 3.9789E-15 25905 20211116_3442_TMUAki_TMT10x_S_F4 145.94 123.99 1574400 2504400 30771 2218500 2048900 1723300 2108000 1640300 1611700 1597100 1808300 1466200 2335800 165860 2276000 1968000 1784300 2119700 1670600 1668300 1561600 1738300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1574400 2504400 30771 2218500 2048900 1723300 2108000 1640300 1611700 1597100 1808300 1466200 2335800 165860 2276000 1968000 1784300 2119700 1670600 1668300 1561600 1738300 1 1 1 1 1 1 1 1 1 1 1 1003200000 225630000 777530000 4003 2364 3743 22613;22614;22615 27177 27177 1 EGLLATHPRPGQERPGVAR Unmodified 2040.0977 0.09770399 1961 Q66K74;Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain yes no 0 0 0 2 By MS/MS 1 0 1 1 30.599 30.652 5 0.0012967 8213 20211116_3439_TMUAki_TMT10x_S_F1 62.203 25.565 133630 208840 0 196570 143420 125000 129410 113720 114540 119500 160550 124410 194820 10472 200330 137120 131500 131540 116360 118810 116470 153450 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 133630 208840 0 196570 143420 125000 129410 113720 114540 119500 160550 124410 194820 10472 200330 137120 131500 131540 116360 118810 116470 153450 1 1 0 1 1 1 1 1 1 1 1 6323000 0 6323000 4004 1961 3744 22616 27178 27178 1 EGLMLDSHEELYK Oxidation (M) 1578.7236 0.72357373 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 1 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 49.02 48.668 3 3.1451E-06 16614 20211116_3441_TMUAki_TMT10x_S_F3 106.17 85.511 1331300 2229100 24085 2537100 1117700 1239000 1190200 2357600 2342600 2117300 1943500 1239800 2081200 129830 2547100 1075000 1367400 1239100 2333400 2318600 2077700 1887200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1331300 2229100 24085 2537100 1117700 1239000 1190200 2357600 2342600 2117300 1943500 1239800 2081200 129830 2547100 1075000 1367400 1239100 2333400 2318600 2077700 1887200 1 1 1 1 1 1 1 1 1 1 1 178850000 0 178850000 4005 1695 3745 22617;22618 27179;27180 27180 2276 2 EGLMLDSHEELYK Unmodified 1562.7287 0.72865911 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 53.109 53.157 3 0.00020608 16125 20211116_3442_TMUAki_TMT10x_S_F4 82.069 74.025 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4006 1695 3745 22619 27181 27181 1 EGLNLPSQLAHR Unmodified 1333.7102 0.71024735 991 P40938;P40938-2 RFC3 Replication factor C subunit 3 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 42.28 42.445 3 0.0010979 10712 20211116_3445_TMUAki_TMT10x_S_F6 75.618 57.887 487680 811620 6433 922890 410830 382480 419250 586120 628890 522930 706790 454130 757740 45351 925560 394530 427550 431310 583760 633380 513320 679400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 487680 811620 6433 922890 410830 382480 419250 586120 628890 522930 706790 454130 757740 45351 925560 394530 427550 431310 583760 633380 513320 679400 1 1 1 1 1 1 1 1 1 1 1 48125000 0 48125000 4007 991 3746 22620;22621 27182;27183 27183 2 EGLQNMEAR Unmodified 1046.4815 0.48149296 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 By MS/MS By matching 2.5 0.5 1 1 1 1 33.52 33.289 2 0.05755 8844 20211116_3429_TMUAki_TMT10x_P_F2 54.191 25.041 666140 1011200 0 1030500 1520700 1100900 673190 517170 582180 528460 811470 620170 943600 58425 1051000 1436300 1104100 724340 555620 604390 515650 775700 1 1 0 1 1 1 1 1 1 1 1 666140 1011200 0 1030500 1520700 1100900 673190 517170 582180 528460 811470 620170 943600 58425 1051000 1436300 1104100 724340 555620 604390 515650 775700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32693000 19635000 13058000 4008 897 3747 22622;22623 27184 27184 1 EGLQNMEAR Oxidation (M) 1062.4764 0.47640759 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 1 0 By MS/MS 2 0 1 1 27.306 27.069 2 0.063209 6397 20211116_3429_TMUAki_TMT10x_P_F2 63.534 35.798 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4009 897 3747 22624 27185 27185 1104 1 EGLRSDVFPGPSFR Unmodified 1562.7841 0.78414057 2151 Q8IX01;Q8IX01-4;Q8IX01-3 SUGP2 SURP and G-patch domain-containing protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 49.977 50.544 3 3.9522E-14 16070 20211116_3446_TMUAki_TMT10x_S_F7 153.23 121.59 7300700 13120000 50355 12310000 10239000 11531000 7377400 15122000 12977000 12209000 12177000 6798000 12239000 692580 12604000 9748400 11876000 7806200 15107000 12929000 12044000 11772000 3 3 2 3 3 3 3 3 3 3 3 2428700 3922300 0 3621900 4341200 6436600 3398500 4456100 3991200 3730000 3826700 2261400 3658800 227360 3758200 4138800 6339100 3514900 4608900 4028600 3672900 3696500 1 1 0 1 1 1 1 1 1 1 1 4872000 9197500 50355 8687800 5897400 5094800 3978900 10666000 8986100 8478500 8350500 4536700 8580400 465210 8845300 5609500 5537100 4291300 10498000 8900200 8370700 8075100 2 2 2 2 2 2 2 2 2 2 2 389170000 207440000 181730000 4010 2151 3748 22625;22626;22627 27186;27187;27188;27189 27188 4 EGLVMVEVR Unmodified 1030.5481 0.54811597 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 51.576 51.21 2 0.054998 17639 20211116_3441_TMUAki_TMT10x_S_F3 54.722 28.266 2728800 4361000 11785 5334000 2513300 2036900 2564500 2445200 2415200 2496400 3186700 2540900 4072900 234200 5323500 2411900 2287600 2594000 2467100 2491000 2436000 3050200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2728800 4361000 11785 5334000 2513300 2036900 2564500 2445200 2415200 2496400 3186700 2540900 4072900 234200 5323500 2411900 2287600 2594000 2467100 2491000 2436000 3050200 1 1 1 1 1 1 1 1 1 1 1 99812000 0 99812000 4011 2048 3749 22628 27190 27190 1 EGMNIVEAMER 2 Oxidation (M) 1309.5642 0.56423631 1385 P62937;P62937-2 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 0 0 2 0 By MS/MS By MS/MS 1.92 0.917 5 5 2 1 6 7 32.993 32.964 2;3 0.006563 7232 20211116_3440_TMUAki_TMT10x_S_F2 62.088 54.521 4599500 6614300 30956 10095000 6905200 5305600 4577500 3041700 3421400 2974800 5392300 4282400 6184800 382490 9980800 6561000 5649500 4729100 3204900 3601200 2908100 5140800 16 16 5 16 16 16 16 16 16 16 16 2862800 3936100 29804 6280400 5434900 4291400 3132600 1831100 2027800 1796700 3316600 2665600 3681600 276140 6211700 5153500 4439200 3263700 1984900 2157000 1756100 3159500 7 7 3 7 7 7 7 7 7 7 7 1736700 2678200 1152.2 3814300 1470300 1014200 1444900 1210600 1393500 1178200 2075800 1616800 2503300 106350 3769100 1407500 1210300 1465400 1220000 1444100 1152000 1981300 9 9 2 9 9 9 9 9 9 9 9 1394500000 1115400000 279040000 4012 1385 3750 22629;22630;22631;22632;22633;22634;22635;22636;22637;22638;22639;22640;22641 27191;27192;27193;27194;27195;27196;27197;27198;27199;27200;27201;27202;27203;27204 27203 1858;1859 14 EGMNIVEAMER Oxidation (M) 1293.5693 0.56932169 1385 P62937;P62937-2 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 0 0 1 0 By MS/MS By MS/MS 2.15 0.948 8 8 8 2 11 15 43.661 43.534 2;3 3.5962E-06 14273 20211116_3429_TMUAki_TMT10x_P_F2 127.17 112.49 36591000 51154000 228580 86764000 45567000 33258000 32646000 21856000 20736000 20747000 39786000 34069000 47866000 3097200 85198000 43363000 36925000 33421000 22764000 22293000 20308000 37791000 27 27 11 27 27 27 27 27 27 27 27 18560000 24963000 87696 44174000 33085000 24821000 20935000 9418000 9140400 9304100 19045000 17281000 23365000 1690300 43418000 31415000 26133000 21505000 10350000 10166000 9091600 18066000 12 12 6 12 12 12 12 12 12 12 12 18030000 26192000 140890 42590000 12481000 8437300 11711000 12438000 11596000 11443000 20741000 16788000 24501000 1406900 41780000 11948000 10792000 11916000 12414000 12126000 11216000 19725000 15 15 5 15 15 15 15 15 15 15 15 5911200000 3797500000 2113700000 4013 1385 3750 22642;22643;22644;22645;22646;22647;22648;22649;22650;22651;22652;22653;22654;22655;22656;22657;22658;22659;22660;22661;22662;22663;22664;22665;22666;22667 27205;27206;27207;27208;27209;27210;27211;27212;27213;27214;27215;27216;27217;27218;27219;27220;27221;27222;27223;27224;27225;27226;27227;27228;27229;27230;27231;27232 27211 1858;1859 28 EGMNIVEAMER Unmodified 1277.5744 0.57440707 1385 P62937;P62937-2 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 2.3 1.1 3 3 2 2 5 5 58.676 58.493 2;3 2.9505E-17 19562 20211116_3439_TMUAki_TMT10x_S_F1 218.36 170.75 68104000 96787000 353720 164770000 67076000 44231000 58243000 25581000 21114000 23804000 64294000 63409000 90567000 5277600 161490000 64071000 52075000 58391000 26897000 24637000 23321000 60685000 11 11 4 11 11 11 11 11 11 11 11 31297000 42776000 18883 74740000 38765000 30250000 33437000 11342000 9564700 10354000 29514000 29139000 40034000 2531800 73324000 37025000 33136000 33457000 12457000 11483000 10153000 27854000 5 5 2 5 5 5 5 5 5 5 5 36808000 54012000 334840 90032000 28311000 13980000 24806000 14239000 11549000 13449000 34780000 34270000 50533000 2745800 88166000 27046000 18939000 24935000 14440000 13154000 13168000 32832000 6 6 2 6 6 6 6 6 6 6 6 11668000000 6273000000 5394600000 4014 1385 3750 22668;22669;22670;22671;22672;22673;22674;22675;22676;22677 27233;27234;27235;27236;27237;27238;27239;27240;27241;27242;27243;27244 27239 12 EGNASGVSLLEALDTILPPTRPTDK Unmodified 2593.3599 0.35991107 1520 Q05639 EEF1A2 Elongation factor 1-alpha 2 yes yes 0 0 0 1 By MS/MS 6 1 1 1 2 79.731 79.753 3;4 2.8162E-11 27725 20211116_3435_TMUAki_TMT10x_P_F7 102.95 88.018 6616100 10089000 332.64 11398000 5825500 8663400 6400500 4329800 3952000 4747400 6817400 6159600 9419300 452670 11494000 5594700 8897000 6386500 4633400 4229300 4619300 6487800 3 3 1 3 3 3 3 3 3 3 3 6616100 10089000 332.64 11398000 5825500 8663400 6400500 4329800 3952000 4747400 6817400 6159600 9419300 452670 11494000 5594700 8897000 6386500 4633400 4229300 4619300 6487800 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 882840000 882840000 0 4015 1520 3751 22678;22679 27245;27246;27247 27247 3 EGNASGVSLLEALDTILPPTRPTDKPLR Unmodified 2959.5978 0.59784994 1520 Q05639 EEF1A2 Elongation factor 1-alpha 2 yes yes 0 0 0 2 By MS/MS By MS/MS 5.17 3.02 2 1 1 2 3 3 78.448 78.441 4 1.8051E-33 25751 20211116_3436_TMUAki_TMT10x_P_F8 175.48 169.26 38349000 64860000 323510 51850000 48547000 59825000 48243000 43362000 42297000 48575000 52340000 35709000 60473000 1866200 53934000 46557000 60084000 48767000 45075000 43646000 47226000 50179000 7 7 3 7 7 7 7 7 7 7 7 17045000 30067000 65700 24359000 17060000 31296000 19627000 19841000 20521000 23233000 25855000 15870000 28035000 593070 25357000 16422000 31197000 19802000 20853000 21027000 22551000 24776000 3 3 1 3 3 3 3 3 3 3 3 21304000 34793000 257810 27492000 31488000 28530000 28616000 23521000 21776000 25342000 26485000 19838000 32438000 1273100 28577000 30135000 28888000 28965000 24222000 22619000 24675000 25403000 4 4 2 4 4 4 4 4 4 4 4 19349000000 8757900000 10591000000 4016 1520 3752 22680;22681;22682;22683;22684;22685 27248;27249;27250;27251;27252;27253;27254 27250 7 EGNDLYHEMIESGVINLK Oxidation (M) 2075.9834 0.98337024 518 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 3.5 0.957 1 2 2 1 4 2 58.665 58.609 3 3.9135E-12 18411 20211116_3442_TMUAki_TMT10x_S_F4 128.59 103.27 25789000 46844000 229580 44468000 38257000 64549000 34561000 51446000 52691000 46525000 39259000 24013000 43701000 2451500 45833000 36599000 64225000 35811000 52821000 52334000 45641000 38288000 12 12 7 12 12 12 12 12 12 12 12 17951000 32735000 134150 30297000 29396000 54589000 26502000 34722000 34800000 30800000 25860000 16715000 30536000 1726400 31444000 28118000 53667000 27290000 36188000 34723000 30243000 25223000 9 9 5 9 9 9 9 9 9 9 9 7837900 14109000 95433 14171000 8861400 9959600 8059400 16725000 17891000 15724000 13399000 7298300 13165000 725090 14389000 8480600 10558000 8521300 16633000 17611000 15398000 13065000 3 3 2 3 3 3 3 3 3 3 3 3381000000 2522400000 858630000 4017 518 3753 22686;22687;22688;22689;22690;22691 27255;27256;27257;27258;27259;27260;27261;27262;27263;27264;27265;27266;27267 27266 419 13 EGNGTVMGAELR Unmodified 1232.5819 0.58193529 511 P08590;P05976;P05976-2 MYL3;MYL1 Myosin light chain 3;Myosin light chain 1/3, skeletal muscle isoform yes no 0 0 0 0 By MS/MS 2 0 1 1 34.93 35.023 2 2.2474E-06 8161 20211116_3440_TMUAki_TMT10x_S_F2 119.74 0 180540 258420 0 395950 170350 117250 181080 105450 116120 119030 200860 168070 241650 10722 390060 163340 136380 181110 108210 123980 115690 191140 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 180540 258420 0 395950 170350 117250 181080 105450 116120 119030 200860 168070 241650 10722 390060 163340 136380 181110 108210 123980 115690 191140 1 1 0 1 1 1 1 1 1 1 1 7513100 0 7513100 4018 511 3754 22692 27268 27268 1 EGNVPNIIIAGPPGTGK Unmodified 1632.8835 0.88352026 929 P35250;P35250-2 RFC2 Replication factor C subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 60.974 61.226 3 8.0962E-08 18021 20211116_3434_TMUAki_TMT10x_P_F6 110.74 97.019 22873000 36405000 829980 37896000 26346000 40052000 26209000 24880000 20432000 22653000 25951000 21303000 33975000 2718500 38587000 25309000 40328000 26413000 25995000 21235000 22216000 24863000 4 4 4 4 4 4 4 4 4 4 4 19178000 30054000 705720 31377000 22309000 36324000 22945000 19434000 15296000 17506000 20807000 17861000 28048000 2291500 31990000 21450000 36320000 23004000 20554000 16091000 17177000 19901000 3 3 3 3 3 3 3 3 3 3 3 3695300 6351000 124270 6519700 4037100 3728000 3263700 5445800 5136800 5147200 5143600 3441700 5926800 426970 6597500 3859100 4008700 3409000 5441300 5144100 5039300 4961600 1 1 1 1 1 1 1 1 1 1 1 1371600000 1128400000 243130000 4019 929 3755 22693;22694;22695;22696 27269;27270;27271;27272;27273 27270 5 EGPAHEPK Unmodified 863.41373 0.41373097 1242 P55265;P55265-5;P55265-4;P55265-3;P55265-2 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 0 0 By MS/MS 3 0 1 1 25.927 25.627 3 0.0093227 7378 20211116_3441_TMUAki_TMT10x_S_F3 67.169 27.507 101890 166620 4644 133160 100220 130900 118750 70757 76582 71115 114080 94907 155350 12752 138170 96845 132140 118180 74987 81085 69439 108890 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 101890 166620 4644 133160 100220 130900 118750 70757 76582 71115 114080 94907 155350 12752 138170 96845 132140 118180 74987 81085 69439 108890 1 1 1 1 1 1 1 1 1 1 1 1461200 0 1461200 4020 1242 3756 22697 27274 27274 1 EGPAVVGQFIQDVK Unmodified 1485.7827 0.78274359 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.75 1.39 1 2 4 4 3 2 8 8 73.659 73.654 2;3 6.4381E-43 24248 20211116_3433_TMUAki_TMT10x_P_F5 258.65 203.1 58118000 101120000 397890 93810000 71999000 85348000 68078000 66524000 64571000 69515000 78179000 54112000 94328000 4784300 96091000 68923000 87046000 69151000 68677000 66326000 67769000 74995000 19 19 8 19 19 19 19 19 19 19 19 22341000 38279000 30790 35672000 25161000 46635000 26584000 25186000 24817000 26387000 29497000 20798000 35709000 1495000 36740000 24136000 46350000 26837000 26726000 25490000 25721000 28310000 8 8 2 8 8 8 8 8 8 8 8 35777000 62841000 367100 58137000 46838000 38714000 41494000 41338000 39754000 43128000 48682000 33313000 58619000 3289300 59351000 44787000 40696000 42315000 41951000 40836000 42047000 46685000 11 11 6 11 11 11 11 11 11 11 11 15923000000 8405500000 7517200000 4021 2116 3757 22698;22699;22700;22701;22702;22703;22704;22705;22706;22707;22708;22709;22710;22711;22712;22713 27275;27276;27277;27278;27279;27280;27281;27282;27283;27284;27285;27286;27287;27288;27289;27290;27291;27292;27293;27294;27295 27280 21 EGPDLDRPGSDRQER Unmodified 1725.803 0.80303811 2083 Q7Z4V5;Q7Z4V5-2;Q7Z4V5-4;Q7Z4V5-3 HDGFRP2 Hepatoma-derived growth factor-related protein 2 yes no 0 0 0 2 By MS/MS 1.67 0.471 1 2 3 24.094 23.942 3;4 0.022264 5237 20211116_3429_TMUAki_TMT10x_P_F2 55.885 40.361 174460 282210 4941.6 307680 279890 326590 200400 194370 194900 191200 356270 162460 263420 19132 312370 266580 328570 207260 204200 204240 186860 338690 2 2 1 2 2 2 2 2 2 2 2 174460 282210 4941.6 307680 279890 326590 200400 194370 194900 191200 356270 162460 263420 19132 312370 266580 328570 207260 204200 204240 186860 338690 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15987000 15987000 0 4022 2083 3758 22714;22715;22716 27296;27297 27297 2 EGPFYPTLR Unmodified 1078.5447 0.54474515 3168 Q9ULC4;Q9ULC4-2;Q9ULC4-3 MCTS1 Malignant T-cell-amplified sequence 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 50.55 50.706 2 0.00057784 13819 20211116_3444_TMUAki_TMT10x_S_F5 118.07 85.763 17578000 28642000 281860 32765000 26220000 31469000 19566000 25319000 26041000 23456000 25534000 16369000 26742000 1841100 33115000 24991000 32000000 20395000 25997000 26191000 22985000 24647000 6 6 6 6 6 6 6 6 6 6 6 9325200 14902000 156240 17476000 17870000 23907000 12643000 13410000 14065000 12683000 13370000 8683900 13915000 1038400 17743000 17012000 23722000 13141000 14143000 14222000 12417000 12919000 3 3 3 3 3 3 3 3 3 3 3 8252800 13741000 125620 15289000 8350100 7562800 6922900 11908000 11976000 10773000 12164000 7685100 12827000 802650 15372000 7978200 8278600 7253200 11854000 11969000 10568000 11728000 3 3 3 3 3 3 3 3 3 3 3 1070200000 604160000 466080000 4023 3168 3759 22717;22718;22719;22720;22721 27298;27299;27300;27301;27302;27303 27301 6 EGPGRPPLDGR Unmodified 1149.5891 0.58906958 3208 Q9UPN6;Q9UPN6-2 SCAF8 Protein SCAF8 yes no 0 0 0 1 By MS/MS 3 0 1 1 28.688 28.415 3 0.00064417 8455 20211116_3441_TMUAki_TMT10x_S_F3 81.676 60.775 311880 480740 0 529320 317560 281600 337700 245840 253400 247100 353060 290370 448760 20600 532860 304830 301350 338880 251800 265020 241280 337500 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 311880 480740 0 529320 317560 281600 337700 245840 253400 247100 353060 290370 448760 20600 532860 304830 301350 338880 251800 265020 241280 337500 2 2 0 2 2 2 2 2 2 2 2 13013000 0 13013000 4024 3208 3760 22722 27304;27305 27304 2 EGPLCDELIR Unmodified 1200.5809 0.58087266 1757 Q15029;Q15029-2;Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 50.66 50.468 2 1.3551E-09 16169 20211116_3430_TMUAki_TMT10x_P_F3 187.82 162.37 19608000 32455000 59588 36592000 28643000 31520000 20063000 26172000 25185000 24125000 27520000 18255000 30300000 1604200 36962000 27239000 32303000 20958000 26818000 25480000 23646000 26475000 7 7 4 7 7 7 7 7 7 7 7 9715100 15601000 15850 16869000 19926000 24321000 13311000 12886000 12074000 12173000 13364000 9044700 14562000 823560 17231000 18931000 24060000 13809000 13657000 12384000 11918000 12852000 3 3 2 3 3 3 3 3 3 3 3 9892500 16854000 43738 19723000 8717700 7198700 6752100 13285000 13110000 11951000 14156000 9210700 15737000 780610 19731000 8308000 8242900 7148500 13161000 13096000 11727000 13623000 4 4 2 4 4 4 4 4 4 4 4 3165500000 1826400000 1339100000 4025 1757 3761 22723;22724;22725;22726;22727;22728 27306;27307;27308;27309;27310;27311;27312 27308 7 EGPSLGPPPVASALSR Unmodified 1533.8151 0.81510635 310 O75150;O75150-3;O75150-4 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 0 0 0 0 By MS/MS 6 0 1 1 54.667 54.763 2 1.76E-09 15767 20211116_3445_TMUAki_TMT10x_S_F6 113.01 85.267 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4026 310 3762 22729 27313 27313 1 EGPVQFEEDPFGLDK Unmodified 1705.7835 0.78353145 1649 Q13573 SNW1 SNW domain-containing protein 1 yes yes 0 0 0 0 By MS/MS 2 0 1 1 75.177 75.059 3 0.010175 25754 20211116_3429_TMUAki_TMT10x_P_F2 56.339 47.293 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4027 1649 3763 22730 27314 27314 1 EGPYDVVVLPGGNLGAQNLSESAAVK Unmodified 2583.318 0.31804626 2578 Q99497 PARK7 Protein deglycase DJ-1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.19 1.36 4 5 6 6 6 15 12 71.819 71.82 2;3;4 3.4316E-74 25250 20211116_3433_TMUAki_TMT10x_P_F5 254.89 235.05 115220000 200200000 1282300 184010000 132750000 182150000 147680000 117240000 115350000 128910000 144630000 107280000 186750000 8453200 188830000 127690000 184220000 148020000 122830000 119800000 125420000 138610000 42 42 21 42 42 42 42 42 42 42 41 65451000 110770000 821210 99104000 64950000 123580000 79570000 67175000 66884000 72755000 78379000 60943000 103320000 4804700 102290000 62656000 123120000 79554000 71313000 69006000 70826000 75253000 26 26 13 26 26 26 26 26 26 26 25 49769000 89430000 461110 84904000 67802000 58566000 68115000 50065000 48466000 56155000 66253000 46342000 83431000 3648500 86542000 65038000 61097000 68467000 51514000 50797000 54593000 63361000 16 16 8 16 16 16 16 16 16 16 16 63365000000 31347000000 32018000000 4028 2578 3764 22731;22732;22733;22734;22735;22736;22737;22738;22739;22740;22741;22742;22743;22744;22745;22746;22747;22748;22749;22750;22751;22752;22753;22754;22755;22756;22757 27315;27316;27317;27318;27319;27320;27321;27322;27323;27324;27325;27326;27327;27328;27329;27330;27331;27332;27333;27334;27335;27336;27337;27338;27339;27340;27341;27342;27343;27344;27345;27346;27347;27348;27349;27350;27351;27352;27353;27354;27355;27356 27328 42 EGPYSISVLYGDEEVPR Unmodified 1908.9105 0.91052288 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 2.47 1.2 4 4 4 2 1 6 9 67.586 67.33 2;3 9.1023E-108 21384 20211116_3440_TMUAki_TMT10x_S_F2 357.95 320.77 55456000 95095000 415720 86218000 64234000 83028000 67536000 54413000 55771000 60343000 68919000 51634000 88701000 4551200 88536000 61662000 84137000 67967000 56945000 57719000 58690000 66077000 21 21 10 21 21 21 21 21 21 21 21 25486000 42128000 97017 38329000 25291000 48884000 31085000 23429000 24805000 26883000 30535000 23728000 39296000 1865600 39528000 24380000 48577000 31034000 25209000 25713000 26113000 29279000 8 8 4 8 8 8 8 8 8 8 8 29971000 52967000 318710 47889000 38943000 34143000 36450000 30983000 30966000 33460000 38384000 27906000 49405000 2685600 49008000 37283000 35560000 36933000 31735000 32006000 32577000 36798000 13 13 6 13 13 13 13 13 13 13 13 12093000000 5519000000 6574300000 4029 755 3765 22758;22759;22760;22761;22762;22763;22764;22765;22766;22767;22768;22769;22770;22771;22772 27357;27358;27359;27360;27361;27362;27363;27364;27365;27366;27367;27368;27369;27370;27371;27372;27373;27374;27375;27376;27377;27378;27379 27370 23 EGQEEDDDDEEDDADEEAPKPDHFVQDPAVLR Unmodified 3653.5037 0.50374695 2785 Q9H1I8;Q9H1I8-3 ASCC2 Activating signal cointegrator 1 complex subunit 2 yes no 0 0 0 1 By matching By MS/MS 1 0 2 1 1 51.689 51.548 4 2.307E-06 16698 20211116_3439_TMUAki_TMT10x_S_F1 70.268 68.586 1567200 3441000 21652 2904400 1305700 1670900 872630 4181400 3590000 3000500 2835200 1459300 3208800 146440 2982400 1242400 1834700 991910 4089300 3506500 2979100 2758400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1567200 3441000 21652 2904400 1305700 1670900 872630 4181400 3590000 3000500 2835200 1459300 3208800 146440 2982400 1242400 1834700 991910 4089300 3506500 2979100 2758400 1 1 1 1 1 1 1 1 1 1 1 843370000 472250000 371120000 4030 2785 3766 22773;22774 27380 27380 1 EGRLEDVENLGCR Unmodified 1545.7206 0.72055404 3145 Q9UJX3;Q9UJX3-2 ANAPC7 Anaphase-promoting complex subunit 7 yes no 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 38.453 38.365 3 7.2647E-05 12496 20211116_3441_TMUAki_TMT10x_S_F3 96.707 68.38 1135400 2064100 31108 2380700 1146800 937230 1148800 1407600 1470900 1303900 1732300 1057400 1927200 123280 2384800 1101600 1054400 1175200 1404300 1491600 1277700 1663000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1135400 2064100 31108 2380700 1146800 937230 1148800 1407600 1470900 1303900 1732300 1057400 1927200 123280 2384800 1101600 1054400 1175200 1404300 1491600 1277700 1663000 2 2 2 2 2 2 2 2 2 2 2 99277000 0 99277000 4031 3145 3767 22775;22776;22777 27381;27382;27383 27383 3 EGRLEESVALR Unmodified 1257.6677 0.66771383 1545 Q08209;Q08209-2;Q08209-3;Q08209-4 PPP3CA Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 34.786 34.625 3 4.1222E-11 10827 20211116_3441_TMUAki_TMT10x_S_F3 162.68 110.19 1295700 2125200 15505 2166500 2546200 2470900 1573000 1762900 1630600 1396200 2036800 1206600 1983200 123460 2211800 2417700 2482500 1648200 1817200 1670800 1378700 1952200 3 3 1 3 3 3 3 3 3 3 3 888150 1418300 15505 1458700 2091500 2111900 1155900 1263100 1217900 963860 1387600 827070 1323600 91762 1495000 1982900 2092100 1223400 1318100 1242300 953680 1333300 2 2 1 2 2 2 2 2 2 2 2 407590 706900 0 707810 454650 359030 417060 499830 412750 432310 649190 379490 659620 31695 716800 434810 390430 424870 499060 428480 425000 618930 1 1 0 1 1 1 1 1 1 1 1 129780000 54966000 74813000 4032 1545 3768 22778;22779;22780;22781 27384;27385;27386;27387 27387 4 EGRLELQQLQAER Unmodified 1568.8271 0.82706802 1080 P48681 NES Nestin yes yes 0 0 0 1 By MS/MS By MS/MS 2.75 0.829 2 1 1 2 2 39.193 39.039 3 1.2299E-19 10032 20211116_3431_TMUAki_TMT10x_P_F4 164.15 134.53 9117300 12659000 53169 16799000 22612000 16242000 9622500 9410500 10866000 8289800 12659000 8489500 11828000 993100 16837000 21358000 16427000 10478000 9879200 11064000 8142400 12156000 3 3 2 3 3 3 3 3 3 3 3 6106100 8573200 6502.4 11102000 20481000 14443000 7494900 6202100 7206100 5567500 8388100 5685400 8009200 713630 11197000 19312000 14322000 8272500 6702800 7385600 5463700 8055100 1 1 1 1 1 1 1 1 1 1 1 3011200 4085800 46667 5697500 2131100 1798700 2127600 3208400 3660100 2722200 4270500 2804000 3818500 279470 5640300 2046000 2104600 2205800 3176400 3678100 2678700 4100700 2 2 1 2 2 2 2 2 2 2 2 169280000 68309000 100970000 4033 1080 3769 22782;22783;22784;22785 27388;27389;27390;27391 27389 4 EGRPPEPTPAK Unmodified 1177.6091 0.60913632 3216 Q9UQ35;Q9UQ35-2 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 29.163 29.064 3 7.8913E-05 5970 20211116_3431_TMUAki_TMT10x_P_F4 99.011 76.132 578550 981480 18465 837700 624200 769470 630110 366510 416010 455380 658860 538820 915280 65813 863720 599780 779040 632210 395640 441210 441080 628060 2 2 2 2 2 2 2 2 2 2 2 392310 617140 10324 542100 437950 602230 416880 231630 278310 292420 440790 365350 575580 42786 559230 420020 601480 419670 256030 294960 283090 420190 1 1 1 1 1 1 1 1 1 1 1 186240 364330 8140.5 295590 186250 167240 213230 134890 137710 162960 218070 173470 339710 23027 304490 179760 177560 212540 139620 146250 158000 207880 1 1 1 1 1 1 1 1 1 1 1 38418000 22115000 16303000 4034 3216 3770 22786;22787;22788 27392;27393 27392 2 EGRPSGEAFVELESEDEVK Unmodified 2105.9753 0.97530798 894 P31943 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 2.12 1.01 9 8 6 3 13 13 52.489 52.348 2;3;4 3.7587E-132 16458 20211116_3429_TMUAki_TMT10x_P_F2 390.28 336.08 282080000 463960000 2063500 469410000 342400000 424570000 311320000 290440000 296290000 300630000 345100000 262630000 432950000 23294000 477820000 327460000 432270000 316940000 302380000 303810000 293190000 331400000 48 48 25 48 48 48 48 48 48 48 48 172370000 272440000 874230 274210000 227670000 326310000 209290000 172120000 173890000 176150000 199790000 160480000 254220000 13513000 280390000 217730000 325750000 212150000 182900000 179370000 171870000 191930000 22 22 10 22 22 22 22 22 22 22 22 109710000 191520000 1189200 195200000 114730000 98255000 102030000 118330000 122400000 124480000 145310000 102160000 178720000 9781100 197420000 109730000 106530000 104790000 119480000 124440000 121320000 139470000 26 26 15 26 26 26 26 26 26 26 26 92700000000 53216000000 39483000000 4035 894 3771 22789;22790;22791;22792;22793;22794;22795;22796;22797;22798;22799;22800;22801;22802;22803;22804;22805;22806;22807;22808;22809;22810;22811;22812;22813;22814 27394;27395;27396;27397;27398;27399;27400;27401;27402;27403;27404;27405;27406;27407;27408;27409;27410;27411;27412;27413;27414;27415;27416;27417;27418;27419;27420;27421;27422;27423;27424;27425;27426;27427;27428;27429;27430;27431;27432;27433;27434;27435;27436;27437;27438;27439;27440;27441;27442;27443;27444 27406 51 EGRPSGEAFVELESEEEVK Unmodified 2119.991 0.99095804 1247 P55795 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2 yes yes 0 0 0 1 By MS/MS By MS/MS 1.8 0.748 4 4 2 4 6 53.329 53.11 3;4 9.5605E-51 17316 20211116_3439_TMUAki_TMT10x_S_F1 230.06 195.97 63111000 106850000 623140 111950000 77375000 87428000 69353000 74430000 74517000 72674000 84285000 58765000 99724000 5719400 113480000 74008000 90286000 70927000 76279000 75928000 71049000 81005000 19 19 15 19 19 19 19 19 19 19 19 26262000 41859000 172650 44329000 39335000 53210000 34231000 28462000 29148000 28584000 32927000 24452000 39068000 2378400 45181000 37589000 53102000 34831000 30191000 30010000 27912000 31647000 6 6 5 6 6 6 6 6 6 6 6 36850000 64994000 450490 67618000 38040000 34219000 35122000 45968000 45368000 44090000 51358000 34313000 60656000 3341000 68297000 36419000 37184000 36095000 46088000 45918000 43138000 49358000 13 13 10 13 13 13 13 13 13 13 13 8956300000 4569100000 4387100000 4036 1247 3772 22815;22816;22817;22818;22819;22820;22821;22822;22823;22824 27445;27446;27447;27448;27449;27450;27451;27452;27453;27454;27455;27456;27457;27458;27459;27460;27461;27462;27463 27451 19 EGSASTEVLRTEAEQCK Unmodified 1893.8738 0.87381979 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 1 By MS/MS By MS/MS 2.25 0.433 3 1 2 2 38.556 38.3 3;4 6.2126E-43 10841 20211116_3429_TMUAki_TMT10x_P_F2 221.47 205.11 2595900 3954800 46206 6102100 6931200 5591600 3352600 4368000 5000400 3152100 4712200 2417300 3698300 307900 6065900 6558000 5700300 3638800 4466400 5004700 3128600 4554600 3 3 1 3 3 3 3 3 3 3 3 1653000 2547700 46206 3821200 6124000 5025700 2795500 2652600 2953800 2035000 2889400 1539400 2382000 233730 3826300 5790500 4992200 3014500 2798300 2995800 2013000 2789300 2 2 1 2 2 2 2 2 2 2 2 942840 1407100 0 2280900 807180 565850 557120 1715300 2046600 1117000 1822800 877860 1316300 74169 2239600 767540 708070 624290 1668100 2008900 1115600 1765300 1 1 0 1 1 1 1 1 1 1 1 288280000 221280000 66995000 4037 352 3773 22825;22826;22827;22828 27464;27465;27466;27467 27464 4 EGSGGGGGMDDIFSHIFGGGLFGFMGNQSR 2 Oxidation (M) 3022.2974 0.29740395 298 O60884 DNAJA2 DnaJ homolog subfamily A member 2 yes yes 0 0 2 0 By matching By MS/MS 8 0 2 1 1 79.565 79.561 3 0.001396 25628 20211116_3447_TMUAki_TMT10x_S_F8 53.578 48.961 859430 1349300 60677 1258300 1054600 1063900 1290000 1254800 1191600 1208200 1196100 800670 1258700 130530 1287200 1020800 1100200 1293200 1264800 1216800 1181900 1153700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 859430 1349300 60677 1258300 1054600 1063900 1290000 1254800 1191600 1208200 1196100 800670 1258700 130530 1287200 1020800 1100200 1293200 1264800 1216800 1181900 1153700 1 1 1 1 1 1 1 1 1 1 1 781170000 363390000 417780000 4038 298 3774 22829;22830 27468 27468 228;229 1 EGSGIGAIDSNLDWSHNFTNMLGYTDHQFTELTR Oxidation (M) 3841.7278 0.72783084 330 O75390 CS Citrate synthase, mitochondrial yes yes 0 0 1 0 By MS/MS By matching 5.25 0.829 1 1 2 3 1 76.85 76.846 4 4.2514E-17 25654 20211116_3433_TMUAki_TMT10x_P_F5 118.01 112.75 3368900 5926600 443.28 5104600 2873000 5750700 3869300 3203200 2877400 3382000 4150500 3136700 5527100 260470 5275300 2779100 5761300 3842000 3390700 3015800 3295700 3964400 2 2 1 2 2 2 2 2 2 2 2 3368900 5926600 443.28 5104600 2873000 5750700 3869300 3203200 2877400 3382000 4150500 3136700 5527100 260470 5275300 2779100 5761300 3842000 3390700 3015800 3295700 3964400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3850000000 2951800000 898170000 4039 330 3775 22831;22832;22833;22834 27469;27470 27470 238 2 EGSIWNHQPCFLK Unmodified 1614.7613 0.76129664 1577 Q12907 LMAN2 Vesicular integral-membrane protein VIP36 yes yes 0 0 0 0 By MS/MS 8 0 1 1 54.952 54.883 3 0.017494 15600 20211116_3447_TMUAki_TMT10x_S_F8 56.122 44.683 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4040 1577 3776 22835 27471 27471 1 EGSLVINSK Unmodified 945.51311 0.51311067 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 40.523 40.578 2 6.0731E-05 11122 20211116_3442_TMUAki_TMT10x_S_F4 105.2 66.047 523530 770870 0 835950 941800 1074500 610150 485820 642910 483260 585800 487430 719550 44887 851780 894420 1066600 637250 523580 650590 472080 566870 1 1 0 1 1 1 1 1 1 1 1 523530 770870 0 835950 941800 1074500 610150 485820 642910 483260 585800 487430 719550 44887 851780 894420 1066600 637250 523580 650590 472080 566870 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21758000 21758000 0 4041 3317 3777 22836;22837;22838 27472;27473;27474 27474 3 EGSPVLLNCLMYK Oxidation (M) 1538.7473 0.74728606 1061 P46977;P46977-2 STT3A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A yes no 0 0 1 0 By MS/MS 7 0 1 1 64.228 64.66 3 0.00062842 21820 20211116_3446_TMUAki_TMT10x_S_F7 70.963 53.527 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4042 1061 3778 22839 27475 27475 1382 1 EGSRTDDEVVQREEEAIQLDGLNASQIR Unmodified 3156.5283 0.5283264 672 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 2 By MS/MS By MS/MS 1.57 0.728 4 2 1 3 4 59.061 58.848 3;4 2.0598E-130 17902 20211116_3440_TMUAki_TMT10x_S_F2 317.02 300.91 21701000 36326000 116590 34197000 25274000 36135000 22736000 38738000 25358000 27395000 31610000 20207000 33888000 1936800 35066000 24176000 36751000 23276000 38915000 25905000 27223000 30299000 9 9 8 9 9 9 9 9 9 9 9 12835000 20138000 44108 17626000 11894000 25768000 12619000 21298000 12997000 15547000 16806000 11951000 18781000 1071000 18280000 11424000 25648000 12774000 21708000 13341000 15421000 16095000 3 3 2 3 3 3 3 3 3 3 3 8866400 16189000 72482 16571000 13380000 10367000 10117000 17440000 12361000 11849000 14803000 8256100 15107000 865850 16785000 12752000 11103000 10503000 17208000 12564000 11802000 14204000 6 6 6 6 6 6 6 6 6 6 6 12099000000 7358300000 4741000000 4043 672 3779 22840;22841;22842;22843;22844;22845;22846 27476;27477;27478;27479;27480;27481;27482;27483;27484 27482 9 EGSVVVDLAAEAGGNFETTKPGELYIHK Unmodified 2930.4662 0.46616706 1630 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.632 1 3 1 1 4 74.333 74.307 4;5 4.2631E-14 23508 20211116_3444_TMUAki_TMT10x_S_F5 121.23 110.61 15287000 27649000 124500 28116000 15286000 16670000 18808000 11079000 11232000 13373000 18075000 14234000 25801000 1360600 28479000 14752000 17563000 18659000 11615000 12001000 12966000 17224000 4 4 3 4 4 4 4 4 4 4 4 2582600 4784200 73306 4383400 2606400 4914100 3403200 3121100 3169400 3407700 3544100 2405200 4462700 282760 4508000 2523600 4933100 3403100 3272400 3247800 3316300 3407300 1 1 1 1 1 1 1 1 1 1 1 12704000 22864000 51195 23733000 12680000 11756000 15405000 7957700 8062600 9965300 14530000 11829000 21338000 1077800 23971000 12228000 12630000 15256000 8342700 8753100 9650000 13817000 3 3 2 3 3 3 3 3 3 3 3 2160100000 366240000 1793800000 4044 1630 3780 22847;22848;22849;22850;22851 27485;27486;27487;27488 27487 4 EGTDSSQGIPQLVSNISACQVIAEAVR Unmodified 2828.3974 0.39743557 2609 Q99832 CCT7 T-complex protein 1 subunit eta yes yes 0 0 0 0 By MS/MS By MS/MS 5.28 1.1 1 3 7 4 3 8 10 74.251 74.249 2;3;4 4.3448E-77 25307 20211116_3434_TMUAki_TMT10x_P_F6 244.32 229.56 45453000 75766000 615170 67141000 53180000 72797000 55998000 47952000 49629000 53058000 58498000 42321000 70666000 3771700 69188000 51055000 73253000 56457000 50161000 51083000 51609000 56156000 22 22 9 22 22 22 22 22 22 22 22 21925000 36910000 269530 30766000 20791000 45153000 23243000 23551000 25769000 27108000 27496000 20415000 34418000 1819600 32035000 19998000 44626000 23526000 25141000 26166000 26329000 26471000 12 12 5 12 12 12 12 12 12 12 12 23528000 38856000 345640 36375000 32389000 27644000 32755000 24402000 23860000 25950000 31001000 21906000 36247000 1952100 37153000 31057000 28627000 32931000 25020000 24916000 25281000 29685000 10 10 4 10 10 10 10 10 10 10 10 31194000000 13873000000 17321000000 4045 2609 3781 22852;22853;22854;22855;22856;22857;22858;22859;22860;22861;22862;22863;22864;22865;22866;22867;22868;22869 27489;27490;27491;27492;27493;27494;27495;27496;27497;27498;27499;27500;27501;27502;27503;27504;27505;27506;27507;27508;27509;27510;27511;27512 27497 24 EGTETFADHREGILK Unmodified 1701.8322 0.83221298 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 1 By MS/MS 4 0 1 1 38.272 38.313 4 1.8351E-06 9729 20211116_3431_TMUAki_TMT10x_P_F4 108.06 86.506 573170 1016700 22162 1227700 1856200 1520100 798350 1038200 1152000 767640 993190 533840 949520 86143 1242000 1754500 1519700 876060 1071800 1150900 760860 963010 1 1 1 1 1 1 1 1 1 1 1 573170 1016700 22162 1227700 1856200 1520100 798350 1038200 1152000 767640 993190 533840 949520 86143 1242000 1754500 1519700 876060 1071800 1150900 760860 963010 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 159270000 159270000 0 4046 3293 3782 22870 27513 27513 1 EGTIGDMAILGITESFQVK Oxidation (M) 2024.0136 0.013607739 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 1 0 By MS/MS By MS/MS 5 0 2 1 1 78.932 78.945 3 2.7986E-06 26557 20211116_3433_TMUAki_TMT10x_P_F5 90.654 81.608 5926600 10907000 95525 8658800 7377800 9686700 8317300 7827400 7923000 8856100 8889300 5519000 10169000 600710 9007600 7103500 9763000 8375300 8083000 8111800 8606900 8545300 2 2 2 2 2 2 2 2 2 2 2 2563500 4358600 34666 3754800 2523100 5260500 3184600 3219100 3283000 3599100 3507500 2387200 4064800 244280 3895700 2438000 5220300 3198700 3387300 3343500 3499400 3376600 1 1 1 1 1 1 1 1 1 1 1 3363100 6548500 60859 4904000 4854600 4426300 5132800 4608400 4640000 5256900 5381800 3131800 6104300 356430 5111900 4665500 4542700 5176600 4695700 4768300 5107500 5168700 1 1 1 1 1 1 1 1 1 1 1 1287800000 366310000 921480000 4047 1429 3783 22871;22872 27514;27515 27514 1925 2 EGTLQHAFLR Unmodified 1170.6146 0.61455605 2399 Q969V3;Q969V3-2 NCLN Nicalin yes no 0 0 0 0 By MS/MS By MS/MS 5.6 0.8 1 4 1 4 38.517 38.523 3 5.2808E-07 8830 20211116_3434_TMUAki_TMT10x_P_F6 154.84 90.98 421410 680870 9787 751040 921830 871740 537380 513160 550240 435280 603330 392450 635590 51068 763030 874820 872570 565590 537520 561100 428330 580370 1 1 1 1 1 1 1 1 1 1 1 421410 680870 9787 751040 921830 871740 537380 513160 550240 435280 603330 392450 635590 51068 763030 874820 872570 565590 537520 561100 428330 580370 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 63595000 63595000 0 4048 2399 3784 22873;22874;22875;22876;22877 27516;27517;27518;27519;27520 27516 5 EGTQASEGYFSQSQEEEFAQSEELCAK Unmodified 3068.2829 0.2829189 1858 Q16643;Q16643-3;Q16643-2 DBN1 Drebrin yes no 0 0 0 0 By MS/MS By MS/MS 2 0.866 3 2 3 3 5 65.078 64.873 3;4 2.9313E-43 20072 20211116_3428_TMUAki_TMT10x_P_F1 198.56 193.02 22425000 39780000 420380 38803000 23263000 37496000 26899000 19522000 18823000 20081000 26070000 20883000 37115000 2187700 39635000 22418000 37875000 26845000 20772000 19760000 19589000 24924000 8 8 4 8 8 8 8 8 8 8 8 15812000 28070000 316270 27556000 15652000 30774000 20635000 13156000 12825000 13349000 17932000 14725000 26190000 1547500 28196000 15149000 30756000 20429000 14271000 13570000 13030000 17140000 5 5 3 5 5 5 5 5 5 5 5 6613100 11710000 104110 11248000 7611300 6721900 6264100 6366400 5998100 6731100 8138100 6158100 10925000 640210 11439000 7269300 7119000 6416100 6501800 6189700 6559000 7784300 3 3 1 3 3 3 3 3 3 3 3 12054000000 6740800000 5313300000 4049 1858 3785 22878;22879;22880;22881;22882;22883;22884;22885 27521;27522;27523;27524;27525;27526;27527;27528;27529;27530 27521 10 EGTTPKPK Unmodified 856.46543 0.46543219 1322 P61927 RPL37 60S ribosomal protein L37 yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 28.57 28.557 3 0.013734 6138 20211116_3433_TMUAki_TMT10x_P_F5 66.299 34.927 1362600 2204500 10012 1625200 1162000 1846900 1253600 839100 908540 838620 1345800 1268800 2054800 119490 1702200 1117100 1845200 1256100 903990 954900 819060 1284700 2 2 2 2 2 2 2 2 2 2 2 1362600 2204500 10012 1625200 1162000 1846900 1253600 839100 908540 838620 1345800 1268800 2054800 119490 1702200 1117100 1845200 1256100 903990 954900 819060 1284700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 51170000 51170000 0 4050 1322 3786 22886;22887 27531;27532 27532 2 EGVECEVINMR Oxidation (M) 1350.5908 0.59078542 619 P11177;P11177-2;P11177-3 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 2 0 2 1 1 37.704 37.629 2 0.011798 10760 20211116_3429_TMUAki_TMT10x_P_F2 66.27 49.328 562140 968790 6005.3 1264300 1617000 1227600 822440 746170 794930 513090 915410 523450 905090 54735 1268400 1530800 1242100 874940 775980 814190 510720 879330 2 2 1 2 2 2 2 2 2 2 2 411840 722830 6005.3 941900 1482400 1118900 701980 605860 638920 414150 726050 383510 675300 54735 948060 1402200 1117400 750900 636150 655840 412380 697700 1 1 1 1 1 1 1 1 1 1 1 150300 245960 0 322430 134570 108710 120470 140310 156010 98944 189360 139940 229790 0 320340 128670 124640 124030 139830 158340 98338 181630 1 1 0 1 1 1 1 1 1 1 1 46871000 39091000 7780500 4051 619 3787 22888;22889 27533;27534 27533 627 2 EGVHGGLINK Unmodified 1022.5509 0.55089316 540 P07737 PFN1 Profilin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.83 0.373 1 5 2 4 32.002 32.059 3 3.6231E-05 8072 20211116_3433_TMUAki_TMT10x_P_F5 123.75 92.675 3302300 5136700 3450.6 5474100 5935500 5855000 3747900 2857500 3101700 2715200 3922900 3074500 4794400 284120 5566300 5634500 5873900 3896100 3052300 3212900 2657700 3758900 5 5 2 5 5 5 5 5 5 5 5 3164200 4896800 0 5259900 5783500 5721300 3573300 2717200 2988800 2599200 3750800 2945900 4570600 269720 5347200 5488100 5732500 3722000 2910800 3093200 2543300 3594700 2 2 0 2 2 2 2 2 2 2 2 138090 239930 3450.6 214170 151940 133770 174620 140290 112960 116100 172110 128600 223790 14402 219100 146430 141380 174030 141590 119720 114380 164200 3 3 2 3 3 3 3 3 3 3 3 249740000 247280000 2461800 4052 540 3788 22890;22891;22892;22893;22894;22895 27535;27536;27537;27538;27539;27540;27541 27536 7 EGVIGVTEEQVHHIVK Unmodified 1772.9421 0.94209778 3112 Q9UH99;Q9UH99-2;Q9UH99-3 SUN2 SUN domain-containing protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 50.848 50.905 4 3.7654E-08 15214 20211116_3442_TMUAki_TMT10x_S_F4 119.31 89.578 4627800 7700500 0 8661200 9126600 9298200 6067200 7285300 7477700 6139300 7553200 4308600 7189000 407570 8777500 8671500 9387800 6357900 7474500 7548200 6043200 7284000 2 2 0 2 2 2 2 2 2 2 2 3181200 4994600 0 5656900 7330800 7843200 4428100 4752500 4796700 4096800 5199600 2961800 4663000 298940 5756900 6954700 7785800 4654800 4968400 4878000 4028100 5003400 1 1 0 1 1 1 1 1 1 1 1 1446600 2705900 0 3004300 1795700 1455000 1639100 2532800 2681000 2042500 2353600 1346800 2526000 108630 3020600 1716800 1602000 1703100 2506100 2670300 2015000 2280600 1 1 0 1 1 1 1 1 1 1 1 816970000 485010000 331960000 4053 3112 3789 22896;22897;22898 27542;27543 27543 2 EGVILTNESAASTGQPDNDVTEGQR Unmodified 2587.1998 0.19978162 1552 Q08J23;Q08J23-2;Q08J23-3 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 46.594 46.567 3 3.0449E-60 12674 20211116_3428_TMUAki_TMT10x_P_F1 220.13 212.86 842720 1401200 15023 1975000 2169000 3520300 1278100 1705900 2163100 1618000 1495500 784760 1309600 102440 1997400 2058300 3450200 1370400 1823400 2138100 1583800 1463400 3 3 3 3 3 3 3 3 3 3 3 637430 1025000 10975 1510500 2032700 3393700 1152300 1306200 1725700 1282000 1123900 593590 958220 82618 1534800 1927600 3294200 1232600 1432700 1709100 1253100 1102800 2 2 2 2 2 2 2 2 2 2 2 205290 376240 4047.9 464550 136270 126670 125740 399650 437430 335950 371630 191170 351410 19826 462630 130650 156010 137750 390650 429030 330730 360530 1 1 1 1 1 1 1 1 1 1 1 286900000 180790000 106100000 4054 1552 3790 22899;22900 27544;27545;27546 27545 3 EGVKFDESEK Unmodified 1166.5455 0.54553301 672 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 1 By MS/MS By MS/MS 3 1.41 1 1 1 1 1 2 3 36.857 36.786 3 0.00031771 9101 20211116_3431_TMUAki_TMT10x_P_F4 102.87 72.937 6884200 11180000 72247 10286000 9351500 10184000 7538800 4826200 6215400 5586500 8095400 6410200 10429000 645920 10555000 8923700 10261000 7700700 5200100 6447700 5424800 7751100 3 3 2 3 3 3 3 3 3 3 3 5321800 8601700 63790 7839100 7540300 8500400 5416300 3698600 4901500 4324100 6233500 4955400 8023400 505020 8060900 7178700 8510900 5589200 4021600 5056200 4197400 5972000 2 2 1 2 2 2 2 2 2 2 2 1562400 2578200 8457 2446400 1811200 1683600 2122400 1127600 1313900 1262400 1861900 1454900 2405200 140900 2493700 1745000 1749700 2111600 1178600 1391500 1227400 1779100 1 1 1 1 1 1 1 1 1 1 1 404540000 262740000 141810000 4055 672 3791 22901;22902;22903;22904;22905 27547;27548;27549 27548 3 EGVKTENNDHINLK Unmodified 1609.806 0.80599822 1323 P61956;P61956-2 SUMO2 Small ubiquitin-related modifier 2 yes no 0 0 0 1 By MS/MS By MS/MS 3.8 1.17 1 1 1 2 3 2 31.868 31.786 4 7.7975E-14 7918 20211116_3431_TMUAki_TMT10x_P_F4 148.52 111.36 6908700 10878000 141460 11897000 14562000 11909000 8388100 4521000 6232600 5022100 7274800 6433600 10155000 787470 12065000 13815000 11965000 8764500 4984500 6471900 4884200 6985500 5 5 2 5 5 5 5 5 5 5 5 6645500 10457000 141460 11454000 14329000 11700000 8146800 4300300 5927000 4807700 6959000 6188500 9760800 773610 11619000 13591000 11738000 8518200 4760900 6163500 4674500 6681200 3 3 2 3 3 3 3 3 3 3 3 263260 421880 0 442230 233330 208480 241280 220720 305550 214380 315770 245090 393740 13860 446210 223700 227080 246310 223610 308400 209630 304290 2 2 0 2 2 2 2 2 2 2 2 858970000 690980000 167990000 4056 1323 3792 22906;22907;22908;22909;22910 27550;27551;27552;27553;27554 27550 5 EGVLKEEILLACEGGTGTCVR Unmodified 2290.1297 0.1297169 2754 Q9GZN8;Q9GZN8-2 C20orf27 UPF0687 protein C20orf27 yes no 0 0 0 1 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 66.34 65.985 3 6.7907E-35 22638 20211116_3430_TMUAki_TMT10x_P_F3 187.62 161.81 5507900 9191500 30928 8538600 5787800 6853500 5349300 4017800 3899300 4206900 6021500 5128500 8574200 464850 8731700 5538900 7022100 5404100 4233800 4105600 4100900 5743000 2 2 1 2 2 2 2 2 2 2 2 2918700 4799100 30928 4379700 2815000 4654000 2946400 2150600 2125100 2274600 3198300 2717800 4476500 269350 4501700 2704300 4668000 2956400 2316600 2236000 2216400 3052100 1 1 1 1 1 1 1 1 1 1 1 2589200 4392500 0 4158900 2972900 2199600 2402900 1867200 1774200 1932300 2823200 2410600 4097800 195500 4229900 2834600 2354200 2447700 1917200 1869700 1884500 2690900 1 1 0 1 1 1 1 1 1 1 1 987980000 692210000 295770000 4057 2754 3793 22911;22912;22913 27555;27556 27555 2 EGVMVAK Unmodified 732.38401 0.38401075 1056;1775 P46783;Q9NQ39;Q15149 RPS10;RPS10P5;PLEC 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like;Plectin no no 0 0 0 0 By MS/MS 4 0 1 1 34.72 34.807 2 0.026711 8760 20211116_3442_TMUAki_TMT10x_S_F4 78.616 45.258 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4058 1056;1775 3794 22914 27557 27557 1 EGVVECSFVK Unmodified 1152.5485 0.5485099 989 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4.14 0.639 1 4 2 4 3 49.428 49.542 2;3 1.9183E-09 13369 20211116_3444_TMUAki_TMT10x_S_F5 182.65 138.84 17412000 26470000 70660 36710000 29691000 22335000 16529000 21267000 21516000 33398000 23463000 16213000 24738000 1643200 36512000 28140000 23616000 17609000 22040000 21740000 32118000 22574000 6 6 4 6 6 6 6 6 6 6 6 6510600 9300700 57885 13086000 19753000 14189000 7301300 6973400 7395100 6144000 8435400 6062500 8692700 779190 13099000 18631000 14224000 8060000 7429400 7556100 6034700 8105100 2 2 2 2 2 2 2 2 2 2 2 10902000 17169000 12775 23624000 9938300 8146600 9228200 14293000 14121000 27254000 15028000 10150000 16045000 864000 23413000 9509700 9392100 9549200 14610000 14184000 26084000 14469000 4 4 2 4 4 4 4 4 4 4 4 1334100000 630380000 703710000 4059 989 3795 22915;22916;22917;22918;22919;22920;22921 27558;27559;27560;27561;27562;27563;27564;27565 27565 8 EGVVGAVEK Unmodified 886.476 0.47599688 379 O76070 SNCG Gamma-synuclein yes yes 0 0 0 0 By MS/MS 4 0 1 1 38.121 38.279 2 0.07863 10099 20211116_3442_TMUAki_TMT10x_S_F4 59.052 18.784 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4060 379 3796 22922 27566 27566 1 EGVVHGVATVAEK Unmodified 1294.6881 0.68811492 967 P37840;P37840-2 SNCA Alpha-synuclein yes no 0 0 0 0 By MS/MS 5 0 1 1 38.487 38.495 3 0.00011312 10132 20211116_3433_TMUAki_TMT10x_P_F5 89.507 66.821 1904200 3061500 50005 3051700 4038900 4449700 2471600 2426200 2619300 2336500 2794000 1773300 2856600 234370 3134800 3836300 4401400 2593600 2566300 2664400 2285600 2689900 1 1 1 1 1 1 1 1 1 1 1 1904200 3061500 50005 3051700 4038900 4449700 2471600 2426200 2619300 2336500 2794000 1773300 2856600 234370 3134800 3836300 4401400 2593600 2566300 2664400 2285600 2689900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 65003000 65003000 0 4061 967 3797 22923 27567 27567 1 EGYNNPPISGENLIGLSR Unmodified 1928.9592 0.9592044 3325 Q9Y5Q8;Q9Y5Q8-2;Q9Y5Q8-3 GTF3C5 General transcription factor 3C polypeptide 5 yes no 0 0 0 0 By MS/MS 5 0 1 1 61.556 61.648 3 0.00023226 18301 20211116_3444_TMUAki_TMT10x_S_F5 64.265 53.36 2969900 5332000 0 5469700 3375800 2995100 3298700 4201100 3572400 3718100 3516600 2765100 4975800 234780 5533200 3233800 3231000 3358500 4196100 3620300 3651200 3394100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2969900 5332000 0 5469700 3375800 2995100 3298700 4201100 3572400 3718100 3516600 2765100 4975800 234780 5533200 3233800 3231000 3358500 4196100 3620300 3651200 3394100 1 1 0 1 1 1 1 1 1 1 1 209140000 0 209140000 4062 3325 3798 22924 27568 27568 1 EGYSGVGLLSR Unmodified 1136.5826 0.58258722 829 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 47.107 47.269 2 5.3533E-08 13548 20211116_3433_TMUAki_TMT10x_P_F5 146.11 107.54 26304000 39333000 391760 62741000 36661000 35357000 23748000 29821000 32658000 27427000 37323000 24494000 36789000 2656300 61943000 34849000 37584000 25040000 30528000 33000000 26886000 35860000 5 5 3 5 5 5 5 5 5 5 5 10194000 15407000 160770 23264000 25019000 24135000 13361000 12470000 13330000 11041000 14388000 9492200 14405000 1180500 23191000 23705000 24271000 14161000 13224000 13600000 10842000 13847000 2 2 1 2 2 2 2 2 2 2 2 16111000 23926000 230990 39477000 11642000 11222000 10387000 17351000 19328000 16386000 22936000 15002000 22384000 1475800 38752000 11145000 13313000 10879000 17303000 19400000 16044000 22014000 3 3 2 3 3 3 3 3 3 3 3 2233300000 1192200000 1041100000 4063 829 3799 22925;22926;22927;22928;22929 27569;27570;27571;27572;27573 27570 5 EHALAQAELLK Unmodified 1221.6717 0.67173657 165 O15126;O15126-2 SCAMP1 Secretory carrier-associated membrane protein 1 yes no 0 0 0 0 By MS/MS 4 0 1 1 43.78 43.88 3 4.1214E-05 11918 20211116_3431_TMUAki_TMT10x_P_F4 95.018 61.794 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4064 165 3800 22930 27574 27574 1 EHALLAYTLGVK Unmodified 1313.7343 0.73433683 1416;1520 P68104;Q5VTE0;Q05639 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2 no no 0 0 0 0 By MS/MS By MS/MS 6.96 1.95 3 2 2 2 4 4 5 51 26 47 79.244 79.178 2;3;4 2.2809E-30 18858 20211116_3446_TMUAki_TMT10x_S_F7 263.11 193.69 519230000 866820000 14396000 931310000 703520000 932820000 599840000 685770000 652810000 654680000 666800000 483530000 809080000 52318000 945560000 672580000 944650000 615510000 708610000 662260000 640670000 642810000 76 76 36 76 76 76 76 75 75 75 75 305070000 496770000 9998400 536390000 486530000 735190000 406630000 405190000 405450000 384290000 399000000 284100000 463690000 31475000 547380000 464900000 729290000 416600000 428000000 412290000 376180000 385100000 20 20 8 20 20 20 20 20 20 20 20 214160000 370050000 4397400 394920000 217000000 197620000 193210000 280580000 247360000 270380000 267800000 199430000 345390000 20843000 398180000 207680000 215360000 198900000 280610000 249960000 264490000 257700000 56 56 28 56 56 56 56 55 55 55 55 279830000000 160620000000 119210000000 4065 1416;1520 3801 22931;22932;22933;22934;22935;22936;22937;22938;22939;22940;22941;22942;22943;22944;22945;22946;22947;22948;22949;22950;22951;22952;22953;22954;22955;22956;22957;22958;22959;22960;22961;22962;22963;22964;22965;22966;22967;22968;22969;22970;22971;22972;22973;22974;22975;22976;22977;22978;22979;22980;22981;22982;22983;22984;22985;22986;22987;22988;22989;22990;22991;22992;22993;22994;22995;22996;22997;22998;22999;23000;23001;23002;23003 27575;27576;27577;27578;27579;27580;27581;27582;27583;27584;27585;27586;27587;27588;27589;27590;27591;27592;27593;27594;27595;27596;27597;27598;27599;27600;27601;27602;27603;27604;27605;27606;27607;27608;27609;27610;27611;27612;27613;27614;27615;27616;27617;27618;27619;27620;27621;27622;27623;27624;27625;27626;27627;27628;27629;27630;27631;27632;27633;27634;27635;27636;27637;27638;27639;27640;27641;27642;27643;27644;27645;27646;27647;27648;27649;27650;27651;27652;27653;27654;27655;27656;27657;27658;27659;27660;27661;27662;27663;27664 27620 90 EHAMLAK Oxidation (M) 814.40072 0.40072345 681 P15170-3;P15170-2;P15170;Q8IYD1 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes no 0 0 1 0 By MS/MS 4 0 1 1 27.077 27.127 3 0.048839 5213 20211116_3431_TMUAki_TMT10x_P_F4 47.067 18.555 143340 224220 691.1 173880 150880 207150 129450 113800 99835 108300 185480 133470 209030 12634 181440 144170 206880 131510 120250 105900 106000 176270 1 1 1 1 1 1 1 1 1 1 1 143340 224220 691.1 173880 150880 207150 129450 113800 99835 108300 185480 133470 209030 12634 181440 144170 206880 131510 120250 105900 106000 176270 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9928000 9928000 0 4066 681 3802 23004 27665 27665 763 1 EHAPSIIFMDEIDSIGSSR Oxidation (M) 2118.9892 0.9891839 1337 P62195;P62195-2 PSMC5 26S protease regulatory subunit 8 yes no 0 0 1 0 By MS/MS By MS/MS 2.29 0.7 1 3 3 4 3 62.918 62.636 3 1.0564E-12 22385 20211116_3441_TMUAki_TMT10x_S_F3 135.08 117.8 2471900 4346000 50710 3840700 3140800 4303700 3041000 3054300 3198900 3505800 3563800 2302000 4053400 261570 3960700 3012100 4327600 3094700 3182000 3260300 3405400 3426600 2 2 2 2 2 2 2 2 2 2 2 1607600 2770300 17033 2437900 2093800 3249400 1951900 1832500 2073900 2222200 2209000 1497000 2583700 155970 2522700 2005100 3228400 1991100 1946400 2109300 2154200 2126700 1 1 1 1 1 1 1 1 1 1 1 864290 1575700 33677 1402700 1047000 1054200 1089100 1221800 1124900 1283700 1354800 804990 1469700 105600 1438000 1007000 1099200 1103700 1235600 1151000 1251100 1299800 1 1 1 1 1 1 1 1 1 1 1 2390400000 1373600000 1016800000 4067 1337 3803 23005;23006;23007;23008;23009;23010;23011 27666;27667;27668 27668 1791 3 EHAPSIIFMDEIDSIGSSR Unmodified 2102.9943 0.99426928 1337 P62195;P62195-2 PSMC5 26S protease regulatory subunit 8 yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.745 3 2 1 3 3 71.891 71.749 3 1.3293E-13 24821 20211116_3439_TMUAki_TMT10x_S_F1 140.28 129.02 13069000 22484000 348460 21293000 15796000 23254000 16681000 15241000 13780000 14626000 17316000 12171000 20975000 1361500 21836000 15183000 23388000 16784000 15882000 14271000 14310000 16595000 7 7 5 7 7 7 7 7 7 7 7 8725900 14401000 228400 13946000 9993700 17821000 10822000 10109000 9100800 9512200 11183000 8125700 13436000 869060 14317000 9611600 17742000 10881000 10650000 9407700 9314700 10723000 4 4 2 4 4 4 4 4 4 4 4 4343600 8082700 120050 7347400 5801900 5432600 5859000 5132000 4679300 5113500 6133300 4045200 7539200 492420 7518900 5571900 5645700 5903500 5232500 4863600 4994900 5871600 3 3 3 3 3 3 3 3 3 3 3 2348900000 1675500000 673390000 4068 1337 3803 23012;23013;23014;23015;23016;23017 27669;27670;27671;27672;27673;27674;27675;27676 27673 8 EHCVCVQGNYIK Unmodified 1505.6755 0.6755181 1522 Q05D32;Q05D32-2 CTDSPL2 CTD small phosphatase-like protein 2 yes no 0 0 0 0 By MS/MS 5 0 1 1 35.542 35.503 3 2.6204E-07 8929 20211116_3433_TMUAki_TMT10x_P_F5 122.33 108.3 1228400 1878600 25565 2000700 2603400 2543400 1561900 1433200 1340600 1161800 1672600 1143900 1753400 144920 2040500 2471600 2532600 1631900 1505100 1385300 1145900 1603200 2 2 2 2 2 2 2 2 2 2 2 1228400 1878600 25565 2000700 2603400 2543400 1561900 1433200 1340600 1161800 1672600 1143900 1753400 144920 2040500 2471600 2532600 1631900 1505100 1385300 1145900 1603200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 74296000 74296000 0 4069 1522 3804 23018 27677;27678 27677 2 EHDPVGQMVNNPK Oxidation (M) 1479.6776 0.67762659 1234 P55060;P55060-3;P55060-4 CSE1L Exportin-2 yes no 0 0 1 0 By MS/MS By MS/MS 4 0.816 1 1 1 1 2 30.221 30.185 3 3.4115E-09 9094 20211116_3441_TMUAki_TMT10x_S_F3 124.21 103.34 537710 872370 3209.9 922690 1202300 1011900 660340 559620 699140 499830 728370 500640 814200 49862 939070 1139000 1015200 699350 590020 710600 490620 701730 5 5 1 5 5 5 5 5 5 5 5 377070 581160 3209.9 636680 1035300 865110 467060 398240 489420 340870 506480 351070 542490 38805 649010 978300 856730 504160 426750 497530 335270 488060 2 2 1 2 2 2 2 2 2 2 2 160650 291220 0 286010 166980 146760 193290 161380 209720 158960 221880 149570 271720 11057 290060 160680 158430 195190 163270 213060 155350 213670 3 3 0 3 3 3 3 3 3 3 3 107910000 60180000 47730000 4070 1234 3805 23019;23020;23021 27679;27680;27681;27682;27683 27681 1660 5 EHDPVGQMVNNPK Unmodified 1463.6827 0.68271197 1234 P55060;P55060-3;P55060-4 CSE1L Exportin-2 yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.156 35.211 3 2.1463E-09 8533 20211116_3431_TMUAki_TMT10x_P_F4 130.56 109.47 1173000 1812200 12229 2364800 3734200 2213900 1613300 1261200 1312600 1006600 1792100 1092200 1693000 144520 2371200 3527900 2243200 1738000 1322800 1365500 993550 1713900 3 3 3 3 3 3 3 3 3 3 3 1020600 1527900 8039.2 2041300 3585500 2092100 1442800 1066000 1104100 855890 1525400 950290 1427600 128030 2047000 3384500 2105100 1565000 1129300 1153000 844570 1458500 2 2 2 2 2 2 2 2 2 2 2 152420 284270 4189.4 323520 148690 121760 170560 195240 208450 150660 266650 141950 265400 16489 324250 143380 138140 173030 193460 212470 148980 255420 1 1 1 1 1 1 1 1 1 1 1 142670000 129880000 12788000 4071 1234 3805 23022;23023;23024 27684;27685;27686 27684 3 EHDVKKEDGTFYEFGEDIPEAPER Unmodified 2836.2828 0.28278297 244 O43776 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 0 0 0 2 By MS/MS By MS/MS 2.38 1 3 4 4 2 6 7 51.607 51.443 4;5 8.5997E-39 17702 20211116_3441_TMUAki_TMT10x_S_F3 198.56 188.76 49256000 84097000 745780 90636000 76500000 99409000 63817000 79523000 78423000 72800000 73950000 45865000 78496000 4401700 92133000 73051000 100280000 65847000 81655000 78984000 71378000 71475000 20 20 13 20 20 20 20 20 20 20 20 29766000 49421000 551580 54255000 52125000 80523000 45897000 47176000 47486000 43166000 43116000 27717000 46133000 2655400 55400000 49837000 79662000 46931000 49528000 48085000 42324000 41728000 10 10 6 10 10 10 10 10 10 10 10 19490000 34676000 194200 36381000 24375000 18886000 17919000 32347000 30937000 29634000 30834000 18148000 32363000 1746300 36733000 23213000 20621000 18917000 32128000 30900000 29054000 29747000 10 10 7 10 10 10 10 10 10 10 10 10608000000 6977200000 3630800000 4072 244 3806 23025;23026;23027;23028;23029;23030;23031;23032;23033;23034;23035;23036;23037 27687;27688;27689;27690;27691;27692;27693;27694;27695;27696;27697;27698;27699;27700;27701;27702;27703;27704;27705;27706 27703 20 EHEVFQR Unmodified 943.45118 0.45117911 298 O60884 DNAJA2 DnaJ homolog subfamily A member 2 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 27.326 27.066 2;3 0.0041318 7980 20211116_3441_TMUAki_TMT10x_S_F3 97.473 76.991 475930 692650 6472.9 613410 484540 578400 500420 723010 349040 488260 538540 443170 646020 43799 630850 465270 594650 502080 720780 368430 486530 513650 4 4 3 4 4 4 4 4 4 4 4 302370 452410 638.51 396470 313530 414580 318310 514880 221320 314730 334880 281530 421940 24008 408690 300670 423490 319630 512440 233430 315620 319530 2 2 1 2 2 2 2 2 2 2 2 173560 240240 5834.4 216940 171010 163820 182110 208130 127720 173540 203660 161640 224090 19791 222170 164600 171160 182450 208340 135010 170910 194110 2 2 2 2 2 2 2 2 2 2 2 19124000 8545200 10579000 4073 298 3807 23038;23039;23040;23041 27707;27708;27709;27710 27709 4 EHEVTIFVR Unmodified 1128.5928 0.59275797 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 By MS/MS By MS/MS 3.19 1.24 2 3 3 6 2 7 9 36.671 36.636 2;3 2.3087E-06 10693 20211116_3429_TMUAki_TMT10x_P_F2 168.74 120.46 8608500 12970000 75484 16186000 9785400 8445000 8209900 7420500 8222300 7501400 10139000 8015400 12114000 725800 16169000 9343100 9057600 8410400 7598800 8432300 7323000 9721700 21 21 10 21 21 21 21 21 21 21 21 2458800 3421000 20722 4511000 4534000 3990400 2361000 2066800 2395600 2192900 2749900 2289300 3196300 221140 4517200 4292000 4054000 2509500 2202300 2448100 2136500 2641800 4 4 2 4 4 4 4 4 4 4 4 6149700 9548900 54763 11675000 5251400 4454600 5848900 5353700 5826800 5308500 7389400 5726100 8918000 504660 11652000 5051100 5003600 5900900 5396500 5984200 5186400 7079900 17 17 8 17 17 17 17 17 17 17 17 1325400000 748230000 577170000 4074 1200 3808 23042;23043;23044;23045;23046;23047;23048;23049;23050;23051;23052;23053;23054;23055;23056;23057 27711;27712;27713;27714;27715;27716;27717;27718;27719;27720;27721;27722;27723;27724;27725;27726;27727;27728;27729;27730;27731;27732;27733;27734 27712 24 EHFQDDVFNEK Unmodified 1406.6103 0.61025853 1031 P43490 NAMPT Nicotinamide phosphoribosyltransferase yes yes 0 0 0 0 By matching By MS/MS 2 0.894 2 1 2 1 4 44.187 44.116 3 6.743E-08 14706 20211116_3441_TMUAki_TMT10x_S_F3 119.39 97.513 980430 1385800 14132 2167400 754160 642600 674600 1146100 1356300 991710 1379700 912980 1296000 91286 2133100 721980 760010 709540 1135300 1350800 974920 1330200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 980430 1385800 14132 2167400 754160 642600 674600 1146100 1356300 991710 1379700 912980 1296000 91286 2133100 721980 760010 709540 1135300 1350800 974920 1330200 1 1 1 1 1 1 1 1 1 1 1 194700000 108790000 85906000 4075 1031 3809 23058;23059;23060;23061;23062 27735;27736;27737 27736 3 EHGAFDAVK Unmodified 972.46649 0.46649483 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS 3 0 1 1 33.619 33.379 3 0.038097 10389 20211116_3441_TMUAki_TMT10x_S_F3 44.863 23.357 507730 934110 0 879960 503130 570200 550250 905720 1051200 781280 861600 472740 871420 41942 896900 483610 607530 571190 900210 1040700 768160 837020 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 507730 934110 0 879960 503130 570200 550250 905720 1051200 781280 861600 472740 871420 41942 896900 483610 607530 571190 900210 1040700 768160 837020 1 1 0 1 1 1 1 1 1 1 1 17980000 0 17980000 4076 629 3810 23063 27738 27738 1 EHGAVAVER Unmodified 966.48829 0.4882929 3203 Q9UNZ2;Q9UNZ2-5;Q9UNZ2-4;Q9UNZ2-6 NSFL1C NSFL1 cofactor p47 yes no 0 0 0 0 By MS/MS 3 0 1 1 25.156 24.856 3 0.088877 7068 20211116_3441_TMUAki_TMT10x_S_F3 40.727 26.061 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4077 3203 3811 23064 27739 27739 1 EHGLIFMETSAK Unmodified 1361.6649 0.66493664 1287;2297 P61019;P61019-2;Q8WUD1;Q8WUD1-2 RAB2A;RAB2B Ras-related protein Rab-2A;Ras-related protein Rab-2B no no 0 0 0 0 By MS/MS By matching 5 0.707 1 2 1 2 2 49.014 49.183 3 0.0019185 14283 20211116_3433_TMUAki_TMT10x_P_F5 69.03 52.088 14797000 23073000 88523 26163000 27132000 28693000 18902000 15342000 15130000 14957000 19344000 13778000 21541000 1444300 26510000 25812000 28775000 19487000 16261000 15707000 14624000 18530000 3 3 1 3 3 3 3 3 3 3 3 14797000 23073000 88523 26163000 27132000 28693000 18902000 15342000 15130000 14957000 19344000 13778000 21541000 1444300 26510000 25812000 28775000 19487000 16261000 15707000 14624000 18530000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1577500000 1012400000 565100000 4078 1287;2297 3812 23065;23066;23067;23068 27740;27741;27742 27741 3 EHGLIFMETSAK Oxidation (M) 1377.6599 0.65985126 1287;2297 P61019;P61019-2;Q8WUD1;Q8WUD1-2 RAB2A;RAB2B Ras-related protein Rab-2A;Ras-related protein Rab-2B no no 0 0 1 0 By MS/MS By MS/MS 5 0.756 2 3 2 3 4 40.733 40.9 3 2.9753E-05 11050 20211116_3433_TMUAki_TMT10x_P_F5 88.021 71.447 2081000 3831200 8314.8 3980200 2284400 2129000 2026700 3215800 3459000 2970400 3486200 1937600 3575400 175430 4022200 2183900 2307500 2113500 3207500 3457200 2911100 3362200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2081000 3831200 8314.8 3980200 2284400 2129000 2026700 3215800 3459000 2970400 3486200 1937600 3575400 175430 4022200 2183900 2307500 2113500 3207500 3457200 2911100 3362200 2 2 1 2 2 2 2 2 2 2 2 898520000 0 898520000 4079 1287;2297 3812 23069;23070;23071;23072;23073;23074;23075 27743;27744;27745;27746;27747;27748;27749 27744 1740 7 EHGVPILISEIHPGQPADR Unmodified 2064.0752 0.075237214 2874 Q9HD26;Q9HD26-2 GOPC Golgi-associated PDZ and coiled-coil motif-containing protein yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 47.153 47.308 4 0.044221 13309 20211116_3431_TMUAki_TMT10x_P_F4 38.418 20.279 6900200 10883000 152040 12855000 11082000 12378000 8445700 8737400 8914100 8368200 9300400 6425900 10162000 772330 12967000 10569000 12558000 8719100 9056200 9061800 8188100 8959800 3 3 3 3 3 3 3 3 3 3 3 4544100 7031500 59273 8315700 8629500 10309000 6052600 5892000 5971100 5563800 6109500 4231400 6566000 489190 8422500 8213100 10280000 6271700 6203600 6083000 5447500 5889400 2 2 2 2 2 2 2 2 2 2 2 2356100 3851200 92764 4538900 2452200 2069300 2393100 2845400 2943000 2804400 3190900 2194500 3596200 283140 4544900 2355400 2277900 2447500 2852600 2978800 2740600 3070400 1 1 1 1 1 1 1 1 1 1 1 890180000 635870000 254320000 4080 2874 3813 23076;23077 27750;27751;27752 27751 3 EHIAASVSIPSEK Unmodified 1366.7092 0.70924429 1047 P46379;P46379-2;P46379-3;P46379-4;P46379-5 BAG6 Large proline-rich protein BAG6 yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 39.834 39.851 3 2.0447E-08 10828 20211116_3433_TMUAki_TMT10x_P_F5 109.84 92.025 884740 1388400 212.96 1525000 1978200 2066600 1180100 1282100 1296200 952980 1256300 823780 1296100 88864 1554200 1876800 2054200 1242400 1333300 1312200 944290 1213100 1 1 1 1 1 1 1 1 1 1 1 884740 1388400 212.96 1525000 1978200 2066600 1180100 1282100 1296200 952980 1256300 823780 1296100 88864 1554200 1876800 2054200 1242400 1333300 1312200 944290 1213100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 64550000 64550000 0 4081 1047 3814 23078;23079;23080 27753;27754;27755 27753 3 EHINLGCDMDFDIAGPSIR Unmodified 2158.9776 0.97757336 760 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.25 1.39 1 2 1 2 2 4 4 65.703 65.574 3 1.9132E-12 20992 20211116_3433_TMUAki_TMT10x_P_F5 130.36 120.94 67851000 115690000 2630400 97968000 78003000 101810000 91494000 91845000 81416000 91809000 91564000 63195000 107880000 7601700 101250000 75283000 103260000 91789000 93884000 83628000 89667000 88014000 12 12 8 12 12 12 12 12 12 12 12 25316000 43489000 627150 38135000 24160000 45849000 29641000 31854000 29352000 31720000 32437000 23576000 40560000 2138200 39398000 23339000 45918000 29771000 33089000 29983000 30985000 31195000 6 6 3 6 6 6 6 6 6 6 6 42535000 72196000 2003300 59833000 53844000 55965000 61852000 59991000 52064000 60089000 59127000 39619000 67321000 5463500 61855000 51945000 57342000 62018000 60795000 53645000 58682000 56819000 6 6 5 6 6 6 6 6 6 6 6 5486600000 2043000000 3443700000 4082 760 3815 23081;23082;23083;23084;23085;23086;23087;23088 27756;27757;27758;27759;27760;27761;27762;27763;27764;27765;27766;27767;27768 27761 13 EHINLGCDMDFDIAGPSIR Oxidation (M) 2174.9725 0.97248798 760 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 0 0 1 0 By MS/MS By MS/MS 3.56 1.07 2 2 3 2 5 4 57.977 57.883 2;3 2.8798E-18 18061 20211116_3442_TMUAki_TMT10x_S_F4 156.96 147.79 21719000 35852000 182220 34546000 28452000 37699000 26289000 29642000 29069000 28817000 28673000 20222000 33449000 1811500 35382000 27221000 38030000 26865000 30520000 29437000 28178000 27672000 11 11 5 11 11 11 11 11 11 11 11 14071000 22668000 152280 22710000 19429000 29179000 18476000 19603000 18848000 18285000 17888000 13101000 21152000 1239400 23262000 18605000 29112000 18802000 20375000 19125000 17912000 17286000 7 7 4 7 7 7 7 7 7 7 7 7647900 13183000 29937 11836000 9023200 8520100 7813700 10039000 10221000 10532000 10784000 7120300 12296000 572050 12120000 8616100 8918300 8063500 10145000 10313000 10266000 10386000 4 4 1 4 4 4 4 4 4 4 4 12232000000 6896200000 5336100000 4083 760 3815 23089;23090;23091;23092;23093;23094;23095;23096;23097 27769;27770;27771;27772;27773;27774;27775;27776;27777;27778;27779;27780 27779 877 12 EHIYDLR Unmodified 944.47158 0.4715802 1721 Q14677;Q14677-2;Q14677-3 CLINT1 Clathrin interactor 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 33.859 33.619 3 0.049278 10427 20211116_3441_TMUAki_TMT10x_S_F3 47.082 17.744 405600 656580 16246 741650 400570 570980 459570 348250 401250 642210 486940 377770 612980 48697 748040 386560 587190 461270 374110 413800 615100 467080 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 405600 656580 16246 741650 400570 570980 459570 348250 401250 642210 486940 377770 612980 48697 748040 386560 587190 461270 374110 413800 615100 467080 1 1 1 1 1 1 1 1 1 1 1 28004000 0 28004000 4084 1721 3816 23098 27781 27781 1 EHKMDQAIIFCR Oxidation (M) 1562.7334 0.73336733 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 1 1 By MS/MS By MS/MS 5.5 0.957 1 2 2 1 4 2 34.156 34.277 4 8.2053E-06 7129 20211116_3444_TMUAki_TMT10x_S_F5 104.24 91.862 2012400 2996000 73399 3665500 3432300 2573900 2015800 1668600 1905400 1499700 2422100 1874300 2798100 255130 3675800 3259800 2669200 2115300 1737100 1961500 1471700 2320500 8 8 8 8 8 8 8 8 8 8 8 1316400 1864900 52112 2317500 2613600 2126000 1351500 1085900 1277500 962340 1583700 1226100 1741900 175870 2329400 2477400 2154300 1434600 1152800 1313700 944960 1518200 4 4 4 4 4 4 4 4 4 4 4 696000 1131100 21287 1348100 818700 447930 664300 582730 627900 537390 838440 648210 1056200 79261 1346500 782410 514870 680770 584320 647850 526710 802300 4 4 4 4 4 4 4 4 4 4 4 276380000 221490000 54883000 4085 2334 3817 23099;23100;23101;23102;23103;23104 27782;27783;27784;27785;27786;27787;27788;27789 27786 2679 8 EHLAQKPVFLPR Unmodified 1433.8143 0.81431849 2558 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a yes yes 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 40.655 40.565 4 1.7148E-07 11777 20211116_3429_TMUAki_TMT10x_P_F2 134.08 121.52 2909300 4454200 68713 5466800 6399800 5988700 3871500 3909000 4012900 3380800 4361100 2709400 4160000 354130 5513300 6077100 6022000 4063600 4063600 4088600 3323600 4196200 4 4 4 4 4 4 4 4 4 4 4 2430000 3650400 51274 4461800 6010100 5625900 3465100 3255900 3351200 2794900 3577600 2262900 3409200 299390 4511900 5701900 5606200 3644300 3416200 3422300 2748600 3444200 3 3 3 3 3 3 3 3 3 3 3 479350 803800 17440 1005000 389760 362850 406440 653060 661690 585910 783520 446450 750790 54740 1001400 375200 415780 419300 647330 666310 575000 752060 1 1 1 1 1 1 1 1 1 1 1 226840000 160770000 66069000 4086 2558 3818 23105;23106;23107;23108 27790;27791;27792;27793 27791 4 EHLLLAR Unmodified 850.50249 0.5024864 1097 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 2 4 4 2 32.914 32.979 2;3 0.0042735 8011 20211116_3433_TMUAki_TMT10x_P_F5 97.068 50.697 4753400 7014300 42369 7453000 7424300 6130300 4501100 3468300 3793700 3510500 5596500 4426000 6546800 450680 7552600 7046600 6266900 4696600 3661900 3954300 3426800 5342900 8 8 4 8 8 8 8 8 8 8 8 4065600 5946100 37904 6295800 6707100 5561800 3783500 3049500 3351000 3045300 4855500 3785700 5549600 397880 6387100 6359200 5654800 3977200 3227200 3481400 2974400 4637400 5 5 3 5 5 5 5 5 5 5 5 687760 1068300 4465.4 1157200 717190 568430 717620 418790 442700 465230 740950 640340 997130 52802 1165500 687380 612030 719380 434740 472990 452460 705530 3 3 1 3 3 3 3 3 3 3 3 534560000 432160000 102400000 4087 1097 3819 23109;23110;23111;23112;23113;23114 27794;27795;27796;27797;27798;27799;27800;27801;27802 27796 9 EHLLQGLLPDVQVPTSVK Unmodified 1972.0993 0.099326699 20 A6NHR9;A6NHR9-2;A6NHR9-3 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.75 0.433 1 3 1 3 74.204 74.283 3 0.0029748 24153 20211116_3436_TMUAki_TMT10x_P_F8 58.848 47.743 4868000 8017700 93253 7932900 5281900 6995700 5652100 6009400 5623600 5440900 5848000 4533300 7481000 496300 8084800 5079500 7162400 5713000 6142700 5730200 5337300 5634400 2 2 2 2 2 2 2 2 2 2 2 2278100 3564900 59554 3469000 1927000 3998100 2485900 2676500 2394800 2452300 2614200 2121500 3326000 239450 3553700 1865400 4010600 2489500 2781300 2448100 2404200 2515000 1 1 1 1 1 1 1 1 1 1 1 2589900 4452800 33699 4463900 3354900 2997600 3166200 3332800 3228800 2988700 3233900 2411700 4155000 256840 4531200 3214200 3151700 3223400 3361400 3282200 2933100 3119400 1 1 1 1 1 1 1 1 1 1 1 708310000 291140000 417180000 4088 20 3820 23115;23116;23117;23118 27803;27804;27805;27806 27803 4 EHMQPTHPIR Unmodified 1244.6084 0.60842481 1331 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 0 0 0 0 By MS/MS 3 0 2 2 25.906 25.606 3;4 0.016839 7396 20211116_3441_TMUAki_TMT10x_S_F3 56.548 41.857 332080 386280 3088.2 275800 357130 416120 355810 497260 357380 300910 374180 309220 360020 15504 291260 342590 417090 361030 495600 364100 301970 360440 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 332080 386280 3088.2 275800 357130 416120 355810 497260 357380 300910 374180 309220 360020 15504 291260 342590 417090 361030 495600 364100 301970 360440 2 2 1 2 2 2 2 2 2 2 2 4365600 0 4365600 4089 1331 3821 23119;23120 27807;27808 27808 2 EHMVGIIFSR Oxidation (M) 1203.607 0.60702783 348 O75592;O75592-2 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 yes no 0 0 1 0 By MS/MS By MS/MS 5.75 0.433 1 3 2 2 38.342 38.344 3 0.0092774 8665 20211116_3434_TMUAki_TMT10x_P_F6 60.641 44.777 324810 464320 12091 539900 631380 650560 433720 330590 381670 314980 409480 302520 433540 42490 547110 601160 648730 448670 351800 391550 308270 394150 1 1 1 1 1 1 1 1 1 1 1 324810 464320 12091 539900 631380 650560 433720 330590 381670 314980 409480 302520 433540 42490 547110 601160 648730 448670 351800 391550 308270 394150 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34689000 34689000 0 4090 348 3822 23121;23122;23123;23124 27809;27810;27811 27809 258 3 EHNGQVTGIDWAPESNR Unmodified 1908.8715 0.87145203 167 O15143 ARPC1B Actin-related protein 2/3 complex subunit 1B yes yes 0 0 0 0 By MS/MS 4 0 1 1 38.32 38.477 3 6.593E-07 10178 20211116_3442_TMUAki_TMT10x_S_F4 99.413 88.558 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4091 167 3823 23125 27812 27812 1 EHPDAWTR Unmodified 1010.457 0.45699277 153 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 28.858 28.585 3 0.024396 8516 20211116_3441_TMUAki_TMT10x_S_F3 55.549 33.402 197260 313480 11149 285380 205860 178930 258250 138570 132640 150030 248710 183750 292400 26865 291520 199380 187940 255330 143270 144550 146050 236330 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 197260 313480 11149 285380 205860 178930 258250 138570 132640 150030 248710 183750 292400 26865 291520 199380 187940 255330 143270 144550 146050 236330 1 1 1 1 1 1 1 1 1 1 1 13440000 0 13440000 4092 153 3824 23126;23127 27813;27814 27814 2 EHPFLVK Unmodified 868.48069 0.48068833 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 5.75 0.433 1 3 2 2 37.159 37.24 3 0.030315 8606 20211116_3434_TMUAki_TMT10x_P_F6 58.604 38.818 877690 1296600 28952 1400400 1511400 1629300 1106000 905940 897650 871310 1072100 817410 1210300 106060 1424700 1440600 1629500 1136600 956570 928520 852390 1028800 2 2 1 2 2 2 2 2 2 2 2 739170 1088000 28952 1185400 1387400 1494400 950420 760500 758770 729580 902030 688460 1015500 97343 1207000 1321000 1486900 980970 809340 785390 713820 865720 1 1 1 1 1 1 1 1 1 1 1 138520 208670 0 215030 124030 134860 155620 145450 138890 141730 170110 128960 194740 8716.7 217720 119550 142570 155680 147230 143130 138570 163130 1 1 0 1 1 1 1 1 1 1 1 38100000 29145000 8955300 4093 1433 3825 23128;23129;23130;23131 27815;27816;27817;27818 27816 4 EHPLLGPYVEDLSK Unmodified 1595.8195 0.81952302 1560 Q12756;Q12756-3;Q12756-2;O60333;O60333-3;O60333-2;O60333-4 KIF1A;KIF1B Kinesin-like protein KIF1A;Kinesin-like protein KIF1B yes no 0 0 0 0 By MS/MS 5 0 1 1 57.841 57.975 3 0.00095807 16800 20211116_3444_TMUAki_TMT10x_S_F5 71.531 53.731 2578900 4747700 17881 4419000 3656700 3109400 2915800 4834500 3963200 3965300 4349900 2401400 4428800 245570 4511800 3488700 3287200 3028800 4802300 3999800 3908500 4184200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2578900 4747700 17881 4419000 3656700 3109400 2915800 4834500 3963200 3965300 4349900 2401400 4428800 245570 4511800 3488700 3287200 3028800 4802300 3999800 3908500 4184200 1 1 1 1 1 1 1 1 1 1 1 142670000 0 142670000 4094 1560 3826 23132 27819 27819 1 EHPNYVDCYLR Unmodified 1464.6456 0.64559818 2006 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog yes yes 0 0 0 0 By MS/MS 4 0 1 1 37.8 37.958 3 0.00027075 9830 20211116_3442_TMUAki_TMT10x_S_F4 83.182 51.751 428800 664310 936.93 810840 392310 300880 391710 400710 454470 403820 569000 399250 620420 34226 809210 376090 340210 399300 402470 463670 394260 545350 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 428800 664310 936.93 810840 392310 300880 391710 400710 454470 403820 569000 399250 620420 34226 809210 376090 340210 399300 402470 463670 394260 545350 2 2 1 2 2 2 2 2 2 2 2 20818000 0 20818000 4095 2006 3827 23133 27820;27821 27821 2 EHPVIESHPDNALEDLRLDKPFPELR Unmodified 3065.557 0.55704775 1648 Q13564;Q13564-3;Q13564-2;Q13564-4 NAE1 NEDD8-activating enzyme E1 regulatory subunit yes no 0 0 0 2 By MS/MS By MS/MS 4.75 0.829 2 1 1 1 3 59.014 59.063 6 1.1866E-30 18610 20211116_3442_TMUAki_TMT10x_S_F4 174.53 165.61 21507000 34706000 192390 35866000 26233000 26429000 22074000 23382000 19512000 21558000 26426000 20025000 32389000 1859900 36367000 25050000 27437000 22529000 23872000 20207000 21130000 25278000 7 7 3 7 7 7 7 7 7 7 7 6951100 10335000 148640 10989000 8242300 13265000 8208100 7299400 5430800 6503600 7880600 6472800 9646300 673260 11198000 7907400 13239000 8241600 7698800 5733300 6384600 7526300 2 2 1 2 2 2 2 2 2 2 2 14556000 24371000 43752 24878000 17991000 13163000 13866000 16083000 14081000 15054000 18546000 13553000 22743000 1186700 25168000 17143000 14198000 14287000 16173000 14474000 14745000 17752000 5 5 2 5 5 5 5 5 5 5 5 3302500000 1034400000 2268200000 4096 1648 3828 23134;23135;23136;23137 27822;27823;27824;27825;27826;27827;27828 27825 7 EHPVLALPGAPAQFPVLEEHRPLQK Unmodified 2772.5075 0.50751879 2804 Q9H488 POFUT1 GDP-fucose protein O-fucosyltransferase 1 yes yes 0 0 0 1 By MS/MS 7 0 1 1 57.856 58.379 5 8.8711E-17 19292 20211116_3446_TMUAki_TMT10x_S_F7 128.12 114.44 12829000 21788000 398930 23113000 13932000 14040000 13326000 17758000 15509000 16607000 17823000 11948000 20336000 1450800 23350000 13368000 14946000 13617000 17833000 15764000 16267000 17121000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12829000 21788000 398930 23113000 13932000 14040000 13326000 17758000 15509000 16607000 17823000 11948000 20336000 1450800 23350000 13368000 14946000 13617000 17833000 15764000 16267000 17121000 3 3 3 3 3 3 3 3 3 3 3 862930000 0 862930000 4097 2804 3829 23138 27829;27830;27831 27831 3 EHPWEVMPDLYFYRDPEEIEKEEQAAAEK Oxidation (M) 3593.6297 0.62967993 565 P08865 RPSA 40S ribosomal protein SA yes yes 0 0 1 2 By MS/MS By MS/MS 1.8 0.98 5 3 1 1 4 6 67.771 67.595 4;5;6 3.8957E-18 21555 20211116_3440_TMUAki_TMT10x_S_F2 122.78 116.8 193400000 336730000 1495200 284300000 231570000 248820000 238530000 125780000 109710000 156100000 209750000 180080000 314010000 16658000 293210000 222240000 252900000 237600000 135000000 120800000 151210000 199240000 17 17 11 17 17 17 17 17 17 17 17 74385000 135850000 235540 118030000 77272000 131900000 101210000 49510000 44392000 64063000 81136000 69256000 126700000 5272800 121880000 74661000 131660000 99650000 54932000 48951000 61968000 77131000 6 6 3 6 6 6 6 6 6 6 6 119010000 200880000 1259600 166280000 154290000 116920000 137320000 76267000 65315000 92040000 128620000 110820000 187310000 11385000 171330000 147580000 121240000 137950000 80067000 71844000 89242000 122110000 11 11 8 11 11 11 11 11 11 11 11 45909000000 26865000000 19045000000 4098 565 3830 23139;23140;23141;23142;23143;23144;23145;23146;23147;23148 27832;27833;27834;27835;27836;27837;27838;27839;27840;27841;27842;27843;27844;27845;27846;27847;27848 27848 532 17 EHPWEVMPDLYFYRDPEEIEKEEQAAAEK Unmodified 3577.6348 0.63476531 565 P08865 RPSA 40S ribosomal protein SA yes yes 0 0 0 2 By MS/MS By MS/MS 1.88 0.781 3 3 2 5 3 73.414 73.291 4;5 2.8202E-33 23477 20211116_3428_TMUAki_TMT10x_P_F1 162.91 149.17 90864000 138110000 967980 156190000 89521000 73895000 108280000 21639000 14220000 25397000 82476000 84608000 128930000 8037900 156830000 86342000 79181000 105940000 24751000 21005000 24649000 77448000 7 7 4 7 7 7 7 7 7 7 7 57591000 83843000 15582 92532000 51703000 54846000 72861000 13039000 8238800 14738000 50693000 53620000 78267000 4328100 93221000 50084000 57259000 70799000 15418000 12716000 14324000 47587000 4 4 1 4 4 4 4 4 4 4 4 33273000 54262000 952400 63660000 37818000 19049000 35423000 8600600 5981500 10659000 31783000 30988000 50668000 3709800 63613000 36259000 21923000 35145000 9333400 8289000 10325000 29861000 3 3 3 3 3 3 3 3 3 3 3 27254000000 15475000000 11780000000 4099 565 3830 23149;23150;23151;23152;23153;23154;23155;23156 27849;27850;27851;27852;27853;27854;27855 27849 7 EHQISPGDFPSLRK Unmodified 1609.8213 0.82125436 2809 Q9H4M9 EHD1 EH domain-containing protein 1 yes yes 0 0 0 1 By MS/MS 6 0 1 1 42.121 42.286 4 0.087339 10629 20211116_3445_TMUAki_TMT10x_S_F6 31.389 16.513 648390 1047500 6613.3 1348300 511150 510080 473170 854920 914410 755090 897390 603760 978550 57997 1341700 489560 579090 495600 848840 910340 741580 866210 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 648390 1047500 6613.3 1348300 511150 510080 473170 854920 914410 755090 897390 603760 978550 57997 1341700 489560 579090 495600 848840 910340 741580 866210 1 1 1 1 1 1 1 1 1 1 1 18194000 0 18194000 4100 2809 3831 23157 27856 27856 1 EHQPDVDSSNICTVQTHVENQSANCLK Unmodified 3109.3829 0.38292449 2586 Q99590;Q99590-2 SCAF11 Protein SCAF11 yes no 0 0 0 0 By MS/MS 4 0 1 1 42.805 42.892 4 2.6333E-33 11554 20211116_3431_TMUAki_TMT10x_P_F4 172.98 165.36 444790 807040 11401 957500 1042200 1453600 686970 624870 766110 637140 695870 414230 753610 55869 973600 991060 1431600 717840 677520 773430 621760 673460 1 1 1 1 1 1 1 1 1 1 1 444790 807040 11401 957500 1042200 1453600 686970 624870 766110 637140 695870 414230 753610 55869 973600 991060 1431600 717840 677520 773430 621760 673460 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 198510000 198510000 0 4101 2586 3832 23158 27857 27857 1 EHQQALDVLDMEEPINKR Oxidation (M) 2180.0532 0.053181143 1587 Q13042;Q13042-3;Q13042-2 CDC16 Cell division cycle protein 16 homolog yes no 0 0 1 1 By MS/MS 3 0 1 1 44.593 44.259 4 0.0018237 14786 20211116_3441_TMUAki_TMT10x_S_F3 61.167 52.566 985370 1759800 31264 1870200 860940 886910 836330 1757100 1604000 1372600 1680900 917710 1642500 109090 1885400 826790 983730 873380 1731100 1600900 1356400 1619200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 985370 1759800 31264 1870200 860940 886910 836330 1757100 1604000 1372600 1680900 917710 1642500 109090 1885400 826790 983730 873380 1731100 1600900 1356400 1619200 1 1 1 1 1 1 1 1 1 1 1 133310000 0 133310000 4102 1587 3833 23159 27858 27858 2147 1 EHSEEPGICEEQNPEAER Unmodified 2138.8811 0.88109002 2036 Q6ZU35 KIAA1211 Uncharacterized protein KIAA1211 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 3 1 2 30.305 30.338 3 7.5974E-32 6139 20211116_3428_TMUAki_TMT10x_P_F1 195.38 186.1 17413 27141 0 55667 132020 46783 34453 24743 37429 17385 32514 16213 25432 0 54642 124140 47712 40141 26049 37773 17282 31517 1 1 0 1 1 1 1 1 1 1 1 17413 27141 0 55667 132020 46783 34453 24743 37429 17385 32514 16213 25432 0 54642 124140 47712 40141 26049 37773 17282 31517 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16666000 11324000 5342100 4103 2036 3834 23160;23161;23162 27859;27860 27859 2 EHTALLK Unmodified 810.45995 0.45995289 714 P18077 RPL35A 60S ribosomal protein L35a yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 32.062 32.047 3 0.00062711 7194 20211116_3431_TMUAki_TMT10x_P_F4 134.66 89.942 3708400 5832800 39209 5075400 4574600 5400300 3505600 2588900 2517300 2812700 4069700 3453200 5439800 354690 5236100 4361800 5418300 3581100 2780800 2659300 2737800 3877900 2 2 1 2 2 2 2 2 2 2 2 3708400 5832800 39209 5075400 4574600 5400300 3505600 2588900 2517300 2812700 4069700 3453200 5439800 354690 5236100 4361800 5418300 3581100 2780800 2659300 2737800 3877900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 278560000 278560000 0 4104 714 3835 23163;23164;23165 27861;27862;27863 27861 3 EHTAYYIK Unmodified 1023.5025 0.50254598 891 P31930 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 0 0 0 0 By MS/MS 5 0 1 1 33.039 33.216 3 0.076023 6833 20211116_3444_TMUAki_TMT10x_S_F5 35.357 15.028 254860 454810 6063.2 462900 257760 220700 319330 259520 277270 242750 346160 237340 424410 26821 468040 249060 240650 319390 261400 286360 237770 331790 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 254860 454810 6063.2 462900 257760 220700 319330 259520 277270 242750 346160 237340 424410 26821 468040 249060 240650 319390 261400 286360 237770 331790 1 1 1 1 1 1 1 1 1 1 1 4051100 0 4051100 4105 891 3836 23166 27864 27864 1 EHTLAWK Unmodified 883.4552 0.45520186 766 P22102;P22102-2 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 0 0 0 0 By MS/MS 6 0 1 1 34.701 34.678 3 0.0064001 7378 20211116_3434_TMUAki_TMT10x_P_F6 90.986 76.991 264560 409410 0 341500 413370 677240 333840 474220 483460 420980 427410 246290 381770 19422 358210 394060 664660 347420 490810 483300 413340 414040 1 1 0 1 1 1 1 1 1 1 1 264560 409410 0 341500 413370 677240 333840 474220 483460 420980 427410 246290 381770 19422 358210 394060 664660 347420 490810 483300 413340 414040 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2162400 2162400 0 4106 766 3837 23167 27865 27865 1 EHVEEISELFYDAK Unmodified 1707.7992 0.79918151 3225 Q9Y265 RUVBL1 RuvB-like 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 68.039 67.796 3 2.2626E-09 21213 20211116_3428_TMUAki_TMT10x_P_F1 127.76 108.43 45737000 78456000 503770 73547000 59295000 71256000 52985000 50049000 48800000 51722000 56838000 42588000 73190000 4324500 75343000 56718000 72255000 53945000 52006000 50114000 50445000 54581000 8 8 5 8 8 8 8 8 8 8 8 20624000 33142000 266470 32423000 24735000 43225000 25767000 21301000 20497000 22968000 24280000 19205000 30922000 1950500 33289000 23755000 42876000 25919000 22813000 21217000 22363000 23305000 3 3 2 3 3 3 3 3 3 3 3 25112000 45315000 237300 41124000 34560000 28031000 27218000 28748000 28302000 28753000 32558000 23383000 42268000 2373900 42054000 32963000 29380000 28026000 29193000 28896000 28082000 31276000 5 5 3 5 5 5 5 5 5 5 5 4365100000 2466800000 1898200000 4107 3225 3838 23168;23169;23170;23171;23172;23173 27866;27867;27868;27869;27870;27871;27872;27873 27866 8 EHVEPVFGFPQFVR Unmodified 1686.8518 0.85182621 358 O75792 RNASEH2A Ribonuclease H2 subunit A yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 64.13 64.398 3 2.0444E-09 21657 20211116_3446_TMUAki_TMT10x_S_F7 129.04 113.28 25935000 44057000 100340 54759000 37576000 44529000 30831000 28548000 28511000 29630000 38004000 24146000 41150000 2145400 54955000 35849000 45635000 31554000 29865000 29444000 28894000 36367000 6 6 3 6 6 6 6 6 6 6 6 16663000 27623000 15982 32561000 28041000 35375000 21327000 18270000 17935000 18912000 23758000 15513000 25794000 1294400 32911000 26702000 35480000 21879000 19458000 18601000 18444000 22739000 4 4 1 4 4 4 4 4 4 4 4 9271900 16434000 84359 22198000 9535200 9154300 9503900 10278000 10576000 10719000 14245000 8633700 15356000 851010 22044000 9147100 10156000 9675000 10406000 10842000 10450000 13628000 2 2 2 2 2 2 2 2 2 2 2 2896200000 1603900000 1292300000 4108 358 3839 23174;23175;23176;23177 27874;27875;27876;27877;27878;27879 27879 6 EHVIEALR Unmodified 965.52943 0.52942943 827 P27635 RPL10 60S ribosomal protein L10 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.816 1 1 1 1 2 33.077 33.061 3 0.0029162 7783 20211116_3431_TMUAki_TMT10x_P_F4 88.294 58.878 1127800 1775200 31255 1881500 1757200 2625000 1543400 1171900 868760 1240000 1293400 1050300 1656800 131450 1923000 1681400 2595700 1555800 1266900 928410 1208300 1234500 4 4 4 4 4 4 4 4 4 4 4 528210 885700 21143 935950 1180200 1560300 787450 633750 466000 659530 648460 491970 826640 72628 960610 1123000 1530200 809320 691890 494610 643070 619900 1 1 1 1 1 1 1 1 1 1 1 599620 889460 10112 945540 577010 1064700 755910 538150 402770 580500 644920 558380 830170 58820 962430 558380 1065500 746470 575000 433790 565200 614630 3 3 3 3 3 3 3 3 3 3 3 154690000 122100000 32589000 4109 827 3840 23178;23179;23180 27880;27881;27882;27883 27880 4 EHVIEALRR Unmodified 1121.6305 0.63054046 827 P27635 RPL10 60S ribosomal protein L10 yes yes 0 0 0 1 By MS/MS 5 0 1 1 31.261 31.197 3 0.00012661 7169 20211116_3433_TMUAki_TMT10x_P_F5 92.239 21.331 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4110 827 3841 23181 27884 27884 1 EHVNVVFIGHVDAGK Unmodified 1619.842 0.8419898 681 P15170-3;P15170-2;P15170;Q8IYD1 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes no 0 0 0 0 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 44.402 44.606 4 1.1897E-14 12397 20211116_3433_TMUAki_TMT10x_P_F5 155.22 142.93 20538000 31765000 144680 36646000 25745000 24974000 19692000 17988000 21046000 18770000 23019000 19123000 29658000 1762100 36865000 24533000 26005000 20333000 18665000 21421000 18299000 22144000 10 10 6 10 10 10 10 10 10 10 10 11185000 16228000 22956 19107000 16271000 17406000 11020000 8007200 9731400 8839800 11016000 10414000 15153000 979390 19263000 15468000 17626000 11413000 8640500 10002000 8599100 10587000 4 4 2 4 4 4 4 4 4 4 4 9353400 15537000 121720 17539000 9474000 7567800 8672500 9980700 11314000 9929900 12003000 8709000 14505000 782760 17602000 9064300 8378900 8920600 10024000 11419000 9700200 11557000 6 6 4 6 6 6 6 6 6 6 6 2788900000 1605700000 1183200000 4111 681 3842 23182;23183;23184;23185;23186 27885;27886;27887;27888;27889;27890;27891;27892;27893;27894 27886 10 EHYPNGVCTVYGK Unmodified 1522.6875 0.68746299 1062 P47755 CAPZA2 F-actin-capping protein subunit alpha-2 yes yes 0 0 0 0 By MS/MS 5 0 1 1 37.134 37.296 3 0.0015037 8476 20211116_3444_TMUAki_TMT10x_S_F5 68.83 46.744 274500 444950 7909.4 574550 245160 216900 212250 438020 501550 326640 493790 255640 415670 29718 571640 234720 247990 225970 430860 497310 323600 476580 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 274500 444950 7909.4 574550 245160 216900 212250 438020 501550 326640 493790 255640 415670 29718 571640 234720 247990 225970 430860 497310 323600 476580 1 1 1 1 1 1 1 1 1 1 1 19474000 0 19474000 4112 1062 3843 23187 27895 27895 1 EHYVDLK Unmodified 902.44978 0.44978213 770;684 P15531;P15531-2;P22392-2 NME1;NME2 Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase B no no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 34.687 34.738 3 0.0058736 8328 20211116_3431_TMUAki_TMT10x_P_F4 92.491 57.196 3062500 4745500 41125 5138700 4843600 4735300 3511000 2008800 2491000 2005500 3445200 2851700 4429600 311750 5208500 4612900 4787700 3599400 2179900 2612600 1958800 3293900 3 3 2 3 3 3 3 3 3 3 3 2571200 3963800 29710 4282300 4458000 4334000 2986700 1679900 2113300 1678700 2846700 2394200 3699800 261860 4346900 4239000 4352400 3079400 1841900 2214200 1639500 2723400 2 2 1 2 2 2 2 2 2 2 2 491310 781760 11415 856440 385630 401340 524250 328950 377630 326790 598490 457540 729750 49891 861630 373940 435300 519980 338040 398430 319250 570500 1 1 1 1 1 1 1 1 1 1 1 236140000 204770000 31367000 4113 684;770 3844 23188;23189;23190 27896;27897;27898 27896 3 EHYVDLKDRPFFAGLVK Unmodified 2033.0734 0.0734463 770;684 P15531;P15531-2;P22392-2 NME1;NME2 Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase B no no 0 0 0 2 By MS/MS By MS/MS 3.75 3.31 4 1 3 4 4 59.024 58.965 4;5 1.4014E-35 17635 20211116_3428_TMUAki_TMT10x_P_F1 199.49 176.13 62047000 118140000 524120 76384000 98181000 178020000 98537000 123530000 126150000 121110000 98428000 57772000 110080000 5690400 82394000 94152000 173860000 100790000 128280000 126140000 118390000 95808000 8 8 4 8 8 8 8 8 8 8 8 36391000 67870000 517750 46055000 64351000 135730000 69966000 73560000 74461000 69063000 55740000 33885000 63248000 3591800 49865000 61856000 131340000 70815000 77793000 74890000 67636000 54350000 5 5 3 5 5 5 5 5 5 5 5 25656000 50274000 6366.3 30329000 33829000 42293000 28571000 49973000 51687000 52052000 42688000 23887000 46837000 2098600 32529000 32296000 42520000 29971000 50484000 51252000 50751000 41458000 3 3 1 3 3 3 3 3 3 3 3 12311000000 6909900000 5400600000 4114 684;770 3845 23191;23192;23193;23194;23195;23196;23197;23198 27899;27900;27901;27902;27903;27904;27905;27906 27899 8 EIADGLCLEVEGK Unmodified 1431.6915 0.69154532 656 P13693 TPT1 Translationally-controlled tumor protein yes yes 0 0 0 0 By MS/MS By MS/MS 2.47 1.09 4 3 5 3 9 6 65.494 65.301 2;3 6.7669E-30 20239 20211116_3428_TMUAki_TMT10x_P_F1 251.24 176.3 29055000 48182000 312960 44110000 35124000 53817000 34442000 43869000 36785000 37972000 39758000 27055000 44944000 2662500 45432000 33673000 54003000 35045000 44928000 37426000 37329000 38261000 11 11 7 11 11 11 11 11 11 11 11 18354000 29703000 272440 26929000 22535000 41260000 23044000 27448000 23198000 23650000 24777000 17091000 27705000 1774800 27882000 21633000 40838000 23353000 28491000 23650000 23255000 23853000 7 7 5 7 7 7 7 7 7 7 7 10701000 18479000 40518 17182000 12590000 12558000 11398000 16420000 13587000 14322000 14980000 9963500 17238000 887740 17551000 12040000 13165000 11692000 16437000 13776000 14074000 14408000 4 4 2 4 4 4 4 4 4 4 4 3412500000 2624000000 788450000 4115 656 3846 23199;23200;23201;23202;23203;23204;23205;23206;23207;23208;23209;23210;23211;23212;23213 27907;27908;27909;27910;27911;27912;27913;27914;27915;27916;27917;27918;27919;27920;27921;27922;27923 27909 17 EIADLGEALATAVIPQWQK Unmodified 2052.0892 0.089155943 1104 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 6.5 1.44 2 1 2 3 4 6 6 81.916 81.922 3;4 5.2866E-24 29036 20211116_3446_TMUAki_TMT10x_S_F7 169.02 158.23 10405000 17090000 109000 17561000 11945000 15826000 16308000 8506400 7867200 10258000 13081000 9688500 15948000 951210 17856000 11567000 16065000 16052000 9070500 8557800 9946400 12457000 12 12 9 12 12 12 12 12 12 12 12 6033300 9700500 55409 9851900 7158600 11276000 9133900 5113400 4719400 5937800 7331300 5617700 9052200 533020 10061000 6914800 11261000 9025000 5534700 5087100 5765200 6991400 7 7 4 7 7 7 7 7 7 7 7 4371600 7389300 53594 7709500 4786200 4550100 7173800 3392900 3147700 4320300 5749600 4070800 6896200 418190 7795100 4652500 4804200 7027200 3535900 3470800 4181200 5465900 5 5 5 5 5 5 5 5 5 5 5 2013200000 1265500000 747650000 4116 1104 3847 23214;23215;23216;23217;23218;23219;23220;23221;23222;23223;23224;23225 27924;27925;27926;27927;27928;27929;27930;27931;27932;27933;27934;27935 27933 12 EIADYLAAGKDER Unmodified 1449.71 0.70997257 1213 P53990;P53990-2;P53990-4;P53990-3;P53990-5 IST1 IST1 homolog yes no 0 0 0 1 By MS/MS 4 0 1 1 52.375 52.541 3 0.098732 15418 20211116_3431_TMUAki_TMT10x_P_F4 38.661 21.294 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4117 1213 3848 23226 27936 27936 1 EIAEAYLGK Unmodified 992.51786 0.51786169 615 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 By MS/MS 5 0 1 1 54.251 54.452 2 1.3843E-05 16450 20211116_3433_TMUAki_TMT10x_P_F5 152.47 46.898 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4118 615 3849 23227 27937 27937 1 EIAENALGK Unmodified 943.49746 0.4974606 893 P31942;P31942-2;P31942-3 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 44.121 43.971 2 3.1267E-05 13472 20211116_3430_TMUAki_TMT10x_P_F3 111.61 65.181 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4119 893 3850 23228;23229 27938;27939 27938 2 EIAQCSKER Unmodified 1119.5343 0.53425682 3373 yes no 0 0 0 1 By MS/MS By MS/MS 3.08 1.35 3 6 6 5 3 1 11 13 42.543 42.524 2;3 0.0026702 11173 20211116_3440_TMUAki_TMT10x_S_F2 78.556 24.988 + 62155000 89101000 215640 131800000 130120000 126050000 59899000 83043000 102010000 84642000 85754000 57869000 83300000 5529100 131360000 122970000 127800000 65733000 86650000 101360000 82600000 83227000 34 34 18 34 34 34 34 34 34 34 34 38183000 53275000 150800 77532000 112080000 109540000 45579000 49515000 61780000 50578000 50384000 35549000 49802000 3811400 77861000 105770000 108270000 50212000 53405000 61737000 49353000 48956000 16 16 8 16 16 16 16 16 16 16 16 23972000 35826000 64841 54271000 18039000 16504000 14320000 33527000 40234000 34064000 35370000 22320000 33498000 1717700 53498000 17200000 19525000 15522000 33245000 39625000 33246000 34270000 18 18 10 18 18 18 18 18 18 18 18 29353000000 15952000000 13401000000 4120 3373 3851 23230;23231;23232;23233;23234;23235;23236;23237;23238;23239;23240;23241;23242;23243;23244;23245;23246;23247;23248;23249;23250;23251;23252;23253 27940;27941;27942;27943;27944;27945;27946;27947;27948;27949;27950;27951;27952;27953;27954;27955;27956;27957 27949 18 EIAQDFK Unmodified 849.42323 0.42323303 1421 P68431;Q71DI3;Q16695;P84243 HIST1H3A;HIST2H3A;HIST3H3;H3F3A Histone H3.1;Histone H3.2;Histone H3.1t;Histone H3.3 yes no 0 0 0 0 By MS/MS By MS/MS 4.4 2.33 2 2 2 2 2 1 2 2 7 8 44.125 44.193 2 0.0021227 12261 20211116_3433_TMUAki_TMT10x_P_F5 129.56 36.003 164730000 280910000 1660800 276600000 267490000 237870000 214670000 171660000 192880000 166350000 235900000 153390000 262100000 16376000 281910000 255240000 243230000 219830000 177720000 198700000 162690000 226230000 16 16 11 16 16 16 16 16 16 16 16 66831000 108070000 549650 107360000 153790000 140460000 73354000 69410000 78154000 64763000 91218000 62229000 100840000 7076600 110070000 145460000 139460000 78760000 74019000 79762000 63443000 87590000 7 7 5 7 7 7 7 7 7 7 7 97896000 172830000 1111100 169240000 113710000 97405000 141310000 102250000 114730000 101590000 144680000 91158000 161260000 9299800 171830000 109780000 103770000 141070000 103700000 118940000 99247000 138640000 9 9 6 9 9 9 9 9 9 9 9 27092000000 16597000000 10495000000 4121 1421 3852 23254;23255;23256;23257;23258;23259;23260;23261;23262;23263;23264;23265;23266;23267;23268 27958;27959;27960;27961;27962;27963;27964;27965;27966;27967;27968;27969;27970;27971;27972;27973;27974;27975;27976 27963 19 EIAQDFKTDLR Unmodified 1334.683 0.68302954 1421 P68431;Q71DI3;Q16695;P84243 HIST1H3A;HIST2H3A;HIST3H3;H3F3A Histone H3.1;Histone H3.2;Histone H3.1t;Histone H3.3 yes no 0 0 0 1 By MS/MS By MS/MS 4.04 1.66 2 3 5 4 5 5 1 13 12 48.915 48.961 2;3 3.8415E-17 12994 20211116_3434_TMUAki_TMT10x_P_F6 230.93 186.04 916200000 1330300000 4651500 1742500000 2547500000 2085800000 1021700000 2269600000 2210500000 1579300000 1653800000 852960000 1242800000 85052000 1753700000 2403400000 2107800000 1153000000 2277600000 2177000000 1570900000 1612600000 39 39 20 39 39 39 39 39 39 39 39 520450000 704410000 435930 951490000 2131300000 1804900000 777840000 1224300000 1305300000 870480000 913000000 484460000 658210000 49565000 965990000 2008500000 1773000000 876090000 1263500000 1290900000 864730000 892880000 19 19 8 19 19 19 19 19 19 19 19 395750000 625850000 4215600 791060000 416210000 280930000 243910000 1045300000 905220000 708870000 740760000 368510000 584600000 35487000 787710000 394900000 334840000 276890000 1014100000 886130000 706180000 719680000 20 20 12 20 20 20 20 20 20 20 20 246260000000 140900000000 105360000000 4122 1421 3853 23269;23270;23271;23272;23273;23274;23275;23276;23277;23278;23279;23280;23281;23282;23283;23284;23285;23286;23287;23288;23289;23290;23291;23292;23293 27977;27978;27979;27980;27981;27982;27983;27984;27985;27986;27987;27988;27989;27990;27991;27992;27993;27994;27995;27996;27997;27998;27999;28000;28001;28002;28003;28004;28005;28006;28007;28008;28009;28010;28011;28012;28013;28014;28015;28016 27994 40 EIATVVK Unmodified 758.4538 0.45380487 471 P00505;P00505-2 GOT2 Aspartate aminotransferase, mitochondrial yes no 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 40.757 40.812 2 0.0062899 12254 20211116_3430_TMUAki_TMT10x_P_F3 104.21 13.168 749690 1140800 0 1212700 1116500 1141600 772400 482770 552180 556640 799130 697960 1064700 57434 1231000 1061300 1152500 794660 526310 580150 540600 763240 1 1 0 1 1 1 1 1 1 1 1 749690 1140800 0 1212700 1116500 1141600 772400 482770 552180 556640 799130 697960 1064700 57434 1231000 1061300 1152500 794660 526310 580150 540600 763240 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32027000 32027000 0 4123 471 3854 23294;23295 28017;28018 28017 2 EIAVHIGDRDNAVR Unmodified 1563.8118 0.8117523 1672 Q14008;Q14008-2;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 1 By MS/MS By MS/MS 2.78 1.03 1 3 2 3 4 5 33.522 33.431 3;4 2.1892E-23 10365 20211116_3441_TMUAki_TMT10x_S_F3 184 146 2006300 3301400 53917 3401900 2842300 3044800 2324300 2018800 2060700 2059700 2560200 1868400 3080900 214540 3458000 2714600 3100900 2376600 2105600 2125600 2009900 2454200 5 5 4 5 5 5 5 5 5 5 5 963830 1607500 16907 1658500 1835300 1961300 1166000 1022800 1015600 1029900 1233000 897440 1500200 94119 1692900 1743100 1958300 1213100 1087500 1047500 1005600 1182700 2 2 1 2 2 2 2 2 2 2 2 1042500 1693900 37010 1743400 1007000 1083500 1158300 996000 1045100 1029800 1327200 970950 1580800 120420 1765200 971560 1142600 1163500 1018100 1078200 1004300 1271500 3 3 3 3 3 3 3 3 3 3 3 606020000 333350000 272670000 4124 1672 3855 23296;23297;23298;23299;23300;23301;23302;23303;23304 28019;28020;28021;28022;28023;28024 28024 6 EIAVTVK Unmodified 758.4538 0.45380487 2609 Q99832;Q99832-3;Q99832-4 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 42.827 42.942 2 0.004389 10672 20211116_3444_TMUAki_TMT10x_S_F5 113.7 19.289 26655000 39593000 560870 55707000 29516000 29722000 25240000 16953000 16313000 16890000 28397000 24822000 37005000 2718200 55303000 28224000 31594000 25549000 17879000 17415000 16498000 27019000 7 7 5 7 7 7 7 7 7 7 7 16308000 23633000 88401 32865000 22534000 23179000 15774000 9841100 9337000 9910100 16219000 15184000 22086000 1467200 32731000 21438000 23911000 16154000 10681000 10025000 9675900 15432000 4 4 2 4 4 4 4 4 4 4 4 10347000 15961000 472470 22841000 6981900 6542600 9465600 7112200 6975800 6979500 12178000 9637500 14919000 1251000 22572000 6785600 7683300 9394400 7198500 7390200 6822000 11587000 3 3 3 3 3 3 3 3 3 3 3 1023800000 589910000 433850000 4125 2609 3856 23305;23306;23307;23308;23309 28025;28026;28027;28028;28029;28030;28031 28030 7 EICELTGIDQSVLER Unmodified 1760.8615 0.86146419 245 O43795;O43795-2 MYO1B Unconventional myosin-Ib yes no 0 0 0 0 By MS/MS 1.5 0.5 1 1 2 68.262 68.107 3 2.4348E-14 22950 20211116_3429_TMUAki_TMT10x_P_F2 147.12 114.79 4000600 6512200 33113 6058700 4166300 7915000 4521600 4402800 4612200 4358000 4967400 3725200 6074900 364860 6240700 4005800 7869800 4570700 4652400 4700800 4258100 4780900 2 2 2 2 2 2 2 2 2 2 2 4000600 6512200 33113 6058700 4166300 7915000 4521600 4402800 4612200 4358000 4967400 3725200 6074900 364860 6240700 4005800 7869800 4570700 4652400 4700800 4258100 4780900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 567770000 567770000 0 4126 245 3857 23310;23311 28032;28033 28033 2 EICNAYTELNDPMR Oxidation (M) 1740.7447 0.74471988 1760 Q15046;Q15046-2 KARS Lysine--tRNA ligase yes no 0 0 1 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 48.586 48.385 2;3 2.102E-13 14985 20211116_3429_TMUAki_TMT10x_P_F2 132.32 111.48 3160700 5193400 61752 5478500 5196700 6758900 3870300 4850800 4108500 4282100 4382600 2943400 4847000 348110 5588000 4953200 6763600 4002600 5011300 4179000 4205500 4219300 3 3 3 3 3 3 3 3 3 3 3 2373000 3656100 56235 3977300 4395400 5996800 3158100 3559800 2902900 3101500 3139700 2210000 3412700 277480 4065000 4186800 5929800 3260200 3728600 2972700 3047900 3021400 2 2 2 2 2 2 2 2 2 2 2 787700 1537300 5517.3 1501200 801250 762080 712190 1291100 1205600 1180600 1243000 733470 1434300 70637 1523000 766370 833830 742340 1282700 1206200 1157600 1197900 1 1 1 1 1 1 1 1 1 1 1 646580000 445000000 201580000 4127 1760 3858 23312;23313;23314 28034;28035;28036;28037 28034 2373 4 EIDDSVLGQTGPYR Unmodified 1548.742 0.74200098 225 O43615 TIMM44 Mitochondrial import inner membrane translocase subunit TIM44 yes yes 0 0 0 0 By matching By MS/MS 3 0 2 1 1 53.66 53.398 3 0.0011456 18549 20211116_3441_TMUAki_TMT10x_S_F3 68.972 51.761 2107000 3430200 85107 3592300 1893000 1980200 1741300 3719100 3366200 3013300 3094000 1962400 3201400 251000 3629200 1816500 2155800 1824500 3672500 3343800 2972000 2993100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2107000 3430200 85107 3592300 1893000 1980200 1741300 3719100 3366200 3013300 3094000 1962400 3201400 251000 3629200 1816500 2155800 1824500 3672500 3343800 2972000 2993100 1 1 1 1 1 1 1 1 1 1 1 162900000 66877000 96022000 4128 225 3859 23315;23316 28038 28038 1 EIDGGLETLR Unmodified 1101.5666 0.5666028 968 P38117;P38117-2 ETFB Electron transfer flavoprotein subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 47.936 47.699 2 0.001072 14679 20211116_3429_TMUAki_TMT10x_P_F2 84.213 50.662 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4129 968 3860 23317;23318;23319 28039;28040;28041 28039 3 EIDVEVR Unmodified 858.4447 0.44469675 557 P08559;P08559-3;P08559-4;P08559-2 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial yes no 0 0 0 0 By matching By MS/MS 1 0 2 1 1 38.979 38.922 2 0.045895 11540 20211116_3439_TMUAki_TMT10x_S_F1 71.342 32.536 1214200 1960400 0 2120600 968770 950830 1072900 1367700 1404300 1232100 1508300 1130500 1829800 90253 2134500 931060 1050200 1093100 1365500 1417800 1208900 1451700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1214200 1960400 0 2120600 968770 950830 1072900 1367700 1404300 1232100 1508300 1130500 1829800 90253 2134500 931060 1050200 1093100 1365500 1417800 1208900 1451700 1 1 0 1 1 1 1 1 1 1 1 56845000 31277000 25568000 4130 557 3861 23320;23321 28042 28042 1 EIDVEVRK Unmodified 986.53966 0.53965977 557 P08559;P08559-3;P08559-4;P08559-2 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 2.75 0.829 2 1 1 2 2 37.971 37.831 3 0.0011336 12225 20211116_3441_TMUAki_TMT10x_S_F3 114.89 67.026 1751300 2694600 22402 3297700 1427000 1280600 1582100 1283100 1374500 1273100 1863500 1630800 2516600 161320 3291500 1373500 1429100 1590300 1304100 1424700 1243800 1782500 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1751300 2694600 22402 3297700 1427000 1280600 1582100 1283100 1374500 1273100 1863500 1630800 2516600 161320 3291500 1373500 1429100 1590300 1304100 1424700 1243800 1782500 3 3 2 3 3 3 3 3 3 3 3 101760000 35344000 66413000 4131 557 3862 23322;23323;23324;23325 28043;28044;28045;28046 28046 4 EIEDFDSLEALRLEGNTVGVEAAR Unmodified 2632.298 0.2980391 1040 P46060 RANGAP1 Ran GTPase-activating protein 1 yes yes 0 0 0 1 By MS/MS 1 0 1 1 74.778 74.687 3 1.1161E-87 26053 20211116_3439_TMUAki_TMT10x_S_F1 275.33 250.12 4057700 6510800 0 7451800 4437900 3239500 4497100 2706000 2748500 2967500 4305700 3777700 6078800 291690 7472600 4253500 3548000 4504300 2786000 2927900 2887500 4105300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4057700 6510800 0 7451800 4437900 3239500 4497100 2706000 2748500 2967500 4305700 3777700 6078800 291690 7472600 4253500 3548000 4504300 2786000 2927900 2887500 4105300 1 1 0 1 1 1 1 1 1 1 1 803400000 0 803400000 4132 1040 3863 23326 28047 28047 1 EIEELKELLPEIR Unmodified 1609.8927 0.89268797 1091 P49321;P49321-3;P49321-4;P49321-2 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 1 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 77.909 77.834 3 7.8301E-05 26903 20211116_3429_TMUAki_TMT10x_P_F2 96.247 72.642 4828500 9212900 200900 7561600 6838700 18948000 9577400 17865000 13982000 14421000 10291000 4497300 8590400 615700 8001000 6638300 18576000 9707900 18115000 13900000 14226000 10041000 2 2 2 2 2 2 2 2 2 2 2 4828500 9212900 200900 7561600 6838700 18948000 9577400 17865000 13982000 14421000 10291000 4497300 8590400 615700 8001000 6638300 18576000 9707900 18115000 13900000 14226000 10041000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2171400000 1410700000 760690000 4133 1091 3864 23327;23328;23329;23330;23331;23332 28048;28049;28050;28051 28048 4 EIEGEEIEIVLAKPPDKK Unmodified 2036.1041 0.10413731 211 O43390;O43390-2;O43390-3;O43390-4 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 2 By MS/MS By matching 5.5 0.5 1 1 1 1 62.854 62.922 4 1.2277E-11 19936 20211116_3433_TMUAki_TMT10x_P_F5 123.19 110.13 7816100 12046000 6122.5 12246000 10725000 16310000 9325800 9287100 8880200 9162900 9472800 7277300 11241000 659600 12539000 10247000 16207000 9519000 9793200 9074600 8954100 9119800 2 2 1 2 2 2 2 2 2 2 2 7816100 12046000 6122.5 12246000 10725000 16310000 9325800 9287100 8880200 9162900 9472800 7277300 11241000 659600 12539000 10247000 16207000 9519000 9793200 9074600 8954100 9119800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1146800000 593560000 553270000 4134 211 3865 23333;23334 28052;28053 28053 2 EIEIDIEPTDKVER Unmodified 1684.8519 0.85194536 1835 Q15843 NEDD8 NEDD8 yes yes 0 0 0 1 By MS/MS By MS/MS 2.33 1.15 3 2 2 2 6 3 54.998 54.864 2;3 5.6924E-49 16038 20211116_3428_TMUAki_TMT10x_P_F1 279.86 243.01 195790000 303490000 2586300 332070000 246190000 300230000 214310000 193270000 182970000 202770000 244710000 182310000 283300000 18042000 336270000 235330000 305420000 218080000 202190000 189710000 197650000 234150000 19 19 12 19 19 19 19 19 19 19 19 133500000 198140000 1855900 220140000 181900000 239260000 141430000 128510000 122860000 131730000 161300000 124300000 184970000 12258000 223310000 173430000 240070000 145000000 136340000 127170000 128520000 154410000 13 13 7 13 13 13 13 13 13 13 13 62291000 105350000 730390 111930000 64294000 60969000 72882000 64763000 60114000 71042000 83409000 58004000 98326000 5784200 112960000 61902000 65340000 73083000 65843000 62541000 69125000 79741000 6 6 5 6 6 6 6 6 6 6 6 22910000000 14937000000 7973100000 4135 1835 3866 23335;23336;23337;23338;23339;23340;23341;23342;23343 28054;28055;28056;28057;28058;28059;28060;28061;28062;28063;28064;28065;28066;28067;28068;28069;28070;28071;28072 28056 19 EIELLCQEHGQENDDLVQR Unmodified 2324.0703 0.07028777 1816 Q15555;Q15555-4;Q15555-5;Q15555-3 MAPRE2 Microtubule-associated protein RP/EB family member 2 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 51.32 51.184 3 2.6829E-41 14524 20211116_3428_TMUAki_TMT10x_P_F1 212.37 201.76 2195300 3809000 3516.7 4169500 2749000 3606900 2049500 3500100 3747400 3050300 3413800 2043800 3555500 168610 4219700 2616900 3706800 2168000 3550600 3726200 2997600 3303500 3 3 1 3 3 3 3 3 3 3 3 1015100 1570900 0 1678200 1713300 2592700 1271500 1321500 1505200 1206400 1448300 945010 1466300 73458 1718100 1630400 2556300 1320100 1404300 1519000 1183000 1398900 1 1 0 1 1 1 1 1 1 1 1 1180100 2238000 3516.7 2491300 1035600 1014200 777930 2178600 2242300 1843900 1965500 1098800 2089300 95156 2501600 986500 1150400 847890 2146300 2207200 1814600 1904600 2 2 1 2 2 2 2 2 2 2 2 508820000 392520000 116300000 4136 1816 3867 23344;23345 28073;28074;28075 28073 3 EIELTHR Unmodified 896.47158 0.4715802 212 O43395;O43395-3 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 30.77 30.531 3 0.0078658 7750 20211116_3429_TMUAki_TMT10x_P_F2 86.794 58.687 750570 1170400 0 1088000 919150 955380 768830 555100 684180 735070 887900 698590 1091800 30957 1113800 875350 972460 785100 589980 706970 710490 850220 2 2 0 2 2 2 2 2 2 2 2 384740 580270 0 552730 550480 628640 382430 295890 365450 374450 459680 358070 541350 15026 566960 522360 628260 396180 319990 375870 362470 440520 1 1 0 1 1 1 1 1 1 1 1 365830 590160 0 535250 368660 326740 386400 259200 318730 360620 428220 340510 550470 15931 546800 353000 344200 388920 269990 331100 348020 409700 1 1 0 1 1 1 1 1 1 1 1 15874000 9616300 6257600 4137 212 3868 23346;23347 28076;28077 28076 2 EIEQEAAVELSQLRDPQHDLDR Unmodified 2590.2623 0.2623223 1067 P47985 UQCRFS1 Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 3 1 2 63.545 63.368 3;4 2.577E-26 19477 20211116_3428_TMUAki_TMT10x_P_F1 160.57 146.55 17211000 28616000 58057 26848000 18094000 24404000 18067000 18407000 17868000 17941000 20386000 16025000 26695000 1113700 27478000 17349000 24877000 18321000 19004000 18275000 17542000 19588000 6 6 2 6 6 6 6 6 6 6 6 5933600 9917300 0 9540600 5210800 12752000 6082100 6153700 6398100 6601000 6308200 5524700 9252500 142580 9807600 5017700 12645000 6133600 6603100 6491900 6428500 6088000 2 2 0 2 2 2 2 2 2 2 2 11277000 18699000 58057 17307000 12884000 11651000 11984000 12254000 11470000 11340000 14078000 10500000 17443000 971150 17670000 12332000 12232000 12187000 12401000 11784000 11113000 13500000 4 4 2 4 4 4 4 4 4 4 4 6006200000 3109900000 2896200000 4138 1067 3869 23348;23349;23350 28078;28079;28080;28081;28082;28083 28078 6 EIESEIDSEEELINK Unmodified 1775.8313 0.8312695 1716 Q14566 MCM6 DNA replication licensing factor MCM6 yes yes 0 0 0 0 By MS/MS By MS/MS 1.25 0.433 3 1 2 2 68.572 68.475 2;3 3.1378E-73 21535 20211116_3428_TMUAki_TMT10x_P_F1 334.52 292.13 27497000 45721000 352730 45957000 28560000 38008000 28106000 26738000 26920000 28925000 33296000 25604000 42664000 2522400 46748000 27388000 38958000 28497000 27820000 27665000 28159000 31922000 7 7 6 7 7 7 7 7 7 7 7 11851000 18904000 156010 19057000 14169000 22435000 13863000 10493000 11201000 11866000 13141000 11035000 17640000 1059500 19481000 13581000 22378000 13996000 11312000 11580000 11533000 12617000 3 3 2 3 3 3 3 3 3 3 3 15646000 26818000 196720 26900000 14391000 15574000 14243000 16246000 15719000 17059000 20154000 14569000 25024000 1462900 27267000 13807000 16579000 14501000 16508000 16084000 16627000 19305000 4 4 4 4 4 4 4 4 4 4 4 6459800000 3903800000 2556000000 4139 1716 3870 23351;23352;23353;23354 28084;28085;28086;28087;28088;28089;28090 28086 7 EIESEIDSEEELINKK Unmodified 1903.9262 0.92623252 1716 Q14566 MCM6 DNA replication licensing factor MCM6 yes yes 0 0 0 1 By MS/MS 1 0 1 1 63.768 63.768 3 0.045662 19640 20211116_3428_TMUAki_TMT10x_P_F1 42.242 31.297 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4140 1716 3871 23355 28091 28091 1 EIEVGGGRK Unmodified 943.50869 0.50869399 1332 P62081 RPS7 40S ribosomal protein S7 yes yes 0 0 0 1 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 31.064 30.97 3 0.00045585 6746 20211116_3431_TMUAki_TMT10x_P_F4 111.46 59.46 5523500 8970700 74255 8374600 5566300 7262500 4709500 3932800 4490800 4229300 6149500 5143500 8368400 527740 8569000 5320200 7392300 4815100 4175500 4637100 4118300 5880800 3 3 3 3 3 3 3 3 3 3 3 3826100 6082700 48145 5817900 3775300 5588300 2874600 2727300 3010600 2867700 4141300 3562900 5674800 361370 5950500 3600200 5642800 2967200 2921500 3096900 2794900 3960000 2 2 2 2 2 2 2 2 2 2 2 1697400 2887900 26110 2556700 1791000 1674200 1834900 1205500 1480300 1361600 2008100 1580600 2693500 166370 2618500 1720000 1749500 1847900 1254000 1540200 1323400 1920800 1 1 1 1 1 1 1 1 1 1 1 300300000 219240000 81060000 4141 1332 3872 23356;23357;23358 28092;28093;28094 28092 3 EIFDIAFPDEQAEALAVER Unmodified 2162.0532 0.053164368 955 P36776;P36776-3;P36776-2 LONP1 Lon protease homolog, mitochondrial yes no 0 0 0 0 By MS/MS 1 0 1 1 79.697 79.697 2 5.7214E-06 26149 20211116_3428_TMUAki_TMT10x_P_F1 93.51 76.298 3416400 5486300 91930 5428800 3039200 6011700 4451100 2783500 2941200 3418000 4089900 3181700 5119100 363640 5551100 2955100 6015800 4394400 3012000 3099000 3312100 3909800 1 1 1 1 1 1 1 1 1 1 1 3416400 5486300 91930 5428800 3039200 6011700 4451100 2783500 2941200 3418000 4089900 3181700 5119100 363640 5551100 2955100 6015800 4394400 3012000 3099000 3312100 3909800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 503700000 503700000 0 4142 955 3873 23359 28095 28095 1 EIFEQPESVVNTMR Oxidation (M) 1693.7981 0.79813565 1525 Q06210;Q06210-2 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes no 0 0 1 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 53.604 53.345 3 0.021541 16954 20211116_3429_TMUAki_TMT10x_P_F2 43.861 29.299 7428700 10887000 59329 13007000 10198000 11612000 8052500 7066900 7230500 7085100 8814800 6917100 10167000 688050 13098000 9726100 11814000 8254700 7415000 7448000 6919000 8454300 3 3 2 3 3 3 3 3 3 3 3 5195300 7571000 59329 9063400 8424300 10174000 6624200 5333300 5512700 5243800 6302400 4837800 7070100 531240 9157300 8035900 10187000 6778900 5664200 5684900 5125000 6055200 2 2 2 2 2 2 2 2 2 2 2 2233400 3316500 0 3943200 1773300 1438200 1428200 1733600 1717800 1841400 2512400 2079300 3097000 156810 3941000 1690200 1626300 1475700 1750900 1763100 1793900 2399000 1 1 0 1 1 1 1 1 1 1 1 645790000 474010000 171780000 4143 1525 3874 23360;23361;23362 28096 28096 2063 1 EIFLSQPILLELEAPLK Unmodified 1952.1234 0.12341618 1333;1334;957 P62140;P36873;P36873-2;P62136;P62136-2 PPP1CB;PPP1CC;PPP1CA Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit no no 0 0 0 0 By MS/MS By MS/MS 4.78 1.99 1 2 2 1 2 1 4 5 81.879 81.876 3 3.466E-11 29017 20211116_3446_TMUAki_TMT10x_S_F7 132.51 117.48 11268000 18425000 39543 17143000 13640000 15371000 14283000 10219000 10213000 11390000 14013000 10491000 17188000 834140 17553000 13086000 15652000 14329000 10685000 10703000 11076000 13400000 10 10 2 10 10 10 10 10 10 10 10 3936500 6359400 0 6044700 3898600 7160700 4575500 3545200 3734200 4262100 4962700 3664400 5932800 219740 6205500 3748300 7144700 4579700 3808500 3879300 4133100 4749300 4 4 0 4 4 4 4 4 4 4 4 7332000 12066000 39543 11099000 9741300 8210100 9708000 6673700 6478800 7128300 9050400 6826600 11255000 614400 11348000 9337800 8507600 9749000 6876500 6823600 6943100 8651000 6 6 2 6 6 6 6 6 6 6 6 1899200000 1037000000 862190000 4144 1334;957;1333 3875 23363;23364;23365;23366;23367;23368;23369;23370;23371 28097;28098;28099;28100;28101;28102;28103;28104;28105;28106 28104 10 EIFMQVEDERR Oxidation (M) 1466.6824 0.68237762 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 1 1 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 40.029 39.934 3 5.0441E-05 12111 20211116_3439_TMUAki_TMT10x_S_F1 92.112 75.48 7602100 11481000 63229 13282000 13103000 12707000 8841200 8657400 9479800 7515400 10408000 7078400 10720000 720780 13414000 12458000 12890000 9210600 8972500 9649100 7387000 10012000 9 9 4 9 9 9 9 9 9 9 9 5370400 7983900 60506 9116900 10800000 10816000 6544300 6014200 6432600 5252500 7138300 5000500 7454100 538830 9246100 10250000 10806000 6857200 6334400 6574000 5161300 6864200 7 7 3 7 7 7 7 7 7 7 7 2231700 3497300 2723.4 4165400 2303400 1891300 2296900 2643200 3047200 2262900 3270100 2077900 3265800 181960 4168200 2208200 2083900 2353400 2638100 3075100 2225700 3147700 2 2 1 2 2 2 2 2 2 2 2 534490000 357320000 177170000 4145 935 3876 23372;23373;23374;23375;23376;23377 28107;28108;28109;28110;28111;28112;28113;28114;28115;28116 28114 1186 10 EIFMQVEDERR Unmodified 1450.6875 0.68746299 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 1 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 3 4 45.076 45.02 3 2.866E-17 15109 20211116_3441_TMUAki_TMT10x_S_F3 218.06 181.64 6810000 10619000 38744 13458000 7985800 6337800 6168600 6865500 6735000 6134000 8924300 6340900 9918900 592740 13422000 7612200 6907600 6369600 6931800 6904600 6020900 8541200 4 4 2 4 4 4 4 4 4 4 4 1465400 1949800 0 2618900 2664200 2319000 1531500 1148600 1139900 1101100 1628300 1364300 1821900 123800 2620000 2525100 2354600 1600600 1225400 1194200 1077300 1555700 1 1 0 1 1 1 1 1 1 1 1 5344600 8668800 38744 10839000 5321600 4018900 4637100 5716900 5595100 5032900 7296000 4976600 8097000 468940 10802000 5087100 4553000 4769100 5706400 5710500 4943600 6985500 3 3 2 3 3 3 3 3 3 3 3 887200000 457380000 429820000 4146 935 3876 23378;23379;23380;23381;23382;23383;23384 28117;28118;28119;28120;28121 28120 5 EIFNFVLK Unmodified 1008.5644 0.56441796 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 77.863 77.838 2 0.0018266 27352 20211116_3439_TMUAki_TMT10x_S_F1 117.04 47.654 31505000 50965000 669100 46587000 36699000 52683000 37521000 34458000 33717000 37202000 38568000 29340000 47540000 3308300 47927000 35250000 52884000 37898000 36037000 34640000 36221000 37055000 4 4 4 4 4 4 4 4 4 4 4 18833000 29392000 407950 27697000 21915000 38150000 23093000 20276000 19886000 22335000 22167000 17539000 27420000 1984800 28532000 21068000 37818000 23263000 21579000 20452000 21728000 21313000 2 2 2 2 2 2 2 2 2 2 2 12672000 21573000 261150 18889000 14784000 14533000 14428000 14182000 13831000 14868000 16401000 11801000 20120000 1323600 19395000 14183000 15066000 14635000 14458000 14188000 14492000 15742000 2 2 2 2 2 2 2 2 2 2 2 1980200000 1119800000 860410000 4147 1433 3877 23385;23386;23387;23388 28122;28123;28124;28125 28124 4 EIGLLSEEVELYGETK Unmodified 1807.9091 0.90912589 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 1.17 0.373 5 1 3 3 81.813 81.79 2;3 6.4781E-21 25612 20211116_3428_TMUAki_TMT10x_P_F1 167.44 131.02 26986000 46686000 47986 45396000 30481000 40618000 32744000 25620000 23660000 26502000 32176000 25124000 43558000 1933100 46331000 29261000 41336000 32814000 26832000 24769000 25847000 30775000 4 4 1 4 4 4 4 4 4 4 4 15335000 24827000 47986 23607000 15685000 28403000 18449000 14512000 14341000 15589000 17380000 14278000 23162000 1232100 24241000 15106000 28327000 18442000 15488000 14878000 15181000 16672000 3 3 1 3 3 3 3 3 3 3 3 11652000 21859000 0 21789000 14796000 12215000 14295000 11108000 9318200 10913000 14796000 10846000 20397000 700920 22090000 14155000 13009000 14372000 11344000 9891800 10666000 14103000 1 1 0 1 1 1 1 1 1 1 1 4422500000 2839500000 1583000000 4148 629 3878 23389;23390;23391;23392;23393;23394 28126;28127;28128;28129;28130 28126 5 EIGNIISDAMK Oxidation (M) 1205.5962 0.59618837 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 4 0 2 1 1 56.544 56.596 3 0.0033855 17593 20211116_3442_TMUAki_TMT10x_S_F4 63.966 42.396 3652200 5828100 113480 6873600 4663600 5719600 3875000 4103200 4246900 4112600 4721400 3401400 5442100 422720 6921100 4458700 5861600 3983300 4253700 4321000 4016200 4539900 2 2 2 2 2 2 2 2 2 2 2 2143600 3373300 71964 3822400 3401400 4539800 2665300 2386800 2387600 2501300 2819700 1996500 3149300 262410 3878500 3247300 4532200 2733400 2538800 2456400 2438200 2706700 1 1 1 1 1 1 1 1 1 1 1 1508600 2454800 41516 3051200 1262200 1179800 1209700 1716400 1859300 1611400 1901700 1404900 2292800 160310 3042600 1211400 1329300 1249900 1714900 1864600 1578100 1833200 1 1 1 1 1 1 1 1 1 1 1 1034100000 544340000 489730000 4149 613 3879 23395;23396 28131;28132 28132 603 2 EIGNIISDAMK Unmodified 1189.6013 0.60127375 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 68.189 68.223 2 3.2364E-08 22117 20211116_3433_TMUAki_TMT10x_P_F5 151.79 98.316 11318000 16395000 5237.7 25399000 10204000 7782000 8603000 4569400 4766800 5221500 9942300 10537000 15332000 805220 25012000 9736400 8942300 8691300 4827500 5200900 5072700 9430800 2 2 1 2 2 2 2 2 2 2 2 5823900 7733100 0 12389000 5768500 5211900 4562800 2424900 2523900 2551200 4911300 5421700 7233200 359690 12203000 5492800 5689600 4628200 2609900 2741500 2486400 4663800 1 1 0 1 1 1 1 1 1 1 1 5493600 8661700 5237.7 13010000 4435800 2570100 4040200 2144600 2242900 2670300 5031100 5115100 8098600 445520 12809000 4243600 3252700 4063200 2217700 2459400 2586300 4767000 1 1 1 1 1 1 1 1 1 1 1 1243400000 560520000 682850000 4150 613 3879 23397;23398;23399;23400;23401 28133;28134;28135 28133 3 EIGNIISDAMKK Unmodified 1317.6962 0.69623677 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 63.182 63.746 3 2.328E-06 20894 20211116_3435_TMUAki_TMT10x_P_F7 117.48 87.041 69853000 100270000 1424700 164240000 83855000 76901000 65962000 38335000 36364000 39203000 69135000 65050000 93804000 7315200 161730000 80041000 82863000 66927000 40949000 39452000 38252000 65677000 3 3 3 3 3 3 3 3 3 3 3 50981000 69941000 779230 116850000 72997000 66216000 53755000 26910000 25489000 27390000 48873000 47474000 65437000 5261200 115130000 69557000 69696000 54657000 29359000 27998000 26731000 46422000 2 2 2 2 2 2 2 2 2 2 2 18872000 30332000 645460 47395000 10858000 10686000 12207000 11425000 10875000 11813000 20262000 17576000 28367000 2053900 46597000 10484000 13167000 12270000 11590000 11455000 11521000 19255000 1 1 1 1 1 1 1 1 1 1 1 2186100000 1134000000 1052000000 4151 613 3880 23402;23403 28136;28137;28138 28137 3 EIIDLVLDR Unmodified 1084.6128 0.61282471 1417;2044 P68363;Q71U36;Q71U36-2;Q9BQE3 TUBA1B;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain no no 0 0 0 0 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 3 4 78.226 78.199 2 3.412E-05 27495 20211116_3439_TMUAki_TMT10x_S_F1 125.56 71.155 19809000 29080000 214.06 29740000 17599000 26108000 22716000 12127000 13244000 15766000 21022000 18443000 27137000 1442400 30239000 16992000 26507000 22481000 13144000 14164000 15248000 20039000 3 3 1 3 3 3 3 3 3 3 3 12874000 18163000 0 18928000 11447000 18480000 14436000 7988300 9133300 10753000 13449000 11985000 16951000 878160 19249000 11040000 18618000 14323000 8734200 9676800 10388000 12840000 2 2 0 2 2 2 2 2 2 2 2 6935600 10917000 214.06 10812000 6151500 7628400 8279600 4138300 4111000 5014000 7573400 6457700 10186000 564220 10990000 5951900 7889200 8158100 4409900 4487600 4860800 7198600 1 1 1 1 1 1 1 1 1 1 1 1720900000 1145600000 575370000 4152 1417;2044 3881 23404;23405;23406;23407;23408;23409;23410 28139;28140;28141;28142;28143;28144;28145 28142 7 EIIEGCIR Unmodified 988.50117 0.50116577 2805 Q9H4A3;Q9H4A3-5;Q9H4A3-2;Q9H4A3-6;Q9H4A3-7;Q96J92;Q9BYP7;Q9BYP7-2;Q96J92-2;Q96J92-3;Q9BYP7-3;Q9BYP7-4;Q9H4A3-4 WNK1;WNK4;WNK3 Serine/threonine-protein kinase WNK1;Serine/threonine-protein kinase WNK4;Serine/threonine-protein kinase WNK3 yes no 0 0 0 0 By MS/MS 3 0 1 1 39.869 39.922 2 0.0086222 11934 20211116_3430_TMUAki_TMT10x_P_F3 86.011 42.887 306750 425060 0 509950 589180 517230 301970 301850 281970 283100 377490 285590 396940 26528 514350 557530 521630 320700 317210 291120 277260 361190 1 1 0 1 1 1 1 1 1 1 1 306750 425060 0 509950 589180 517230 301970 301850 281970 283100 377490 285590 396940 26528 514350 557530 521630 320700 317210 291120 277260 361190 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13435000 13435000 0 4153 2805 3882 23411 28146 28146 1 EIIGVVSQEPVLFATTIAENIR Unmodified 2398.3108 0.31077604 550 P08183;P08183-2 ABCB1 Multidrug resistance protein 1 yes no 0 0 0 0 By matching By MS/MS 6.5 0.5 2 2 2 2 81.942 81.952 3 1.2599E-10 29064 20211116_3446_TMUAki_TMT10x_S_F7 111.38 95.387 1288300 2231600 10257 1934200 1554000 1495600 1604200 984460 1025900 1261800 1796400 1199600 2081200 117270 1987600 1491700 1539200 1606700 1035000 1096300 1220900 1709000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1288300 2231600 10257 1934200 1554000 1495600 1604200 984460 1025900 1261800 1796400 1199600 2081200 117270 1987600 1491700 1539200 1606700 1035000 1096300 1220900 1709000 2 2 1 2 2 2 2 2 2 2 2 207680000 83050000 124630000 4154 550 3883 23412;23413;23414;23415 28147;28148 28148 2 EIISFGSGYGGNSLLGKK Unmodified 1825.9574 0.95741349 1865 Q16822;Q16822-2;Q16822-3;P35558 PCK2;PCK1 Phosphoenolpyruvate carboxykinase [GTP], mitochondrial;Phosphoenolpyruvate carboxykinase, cytosolic [GTP] yes no 0 0 0 1 By MS/MS 2 0 1 1 65.343 65.037 3 5.8955E-06 21780 20211116_3429_TMUAki_TMT10x_P_F2 93.115 66.991 2228600 3557900 1861 3747500 3042200 5548100 3244600 3394700 3352400 3249900 3441700 2075100 3320600 197900 3836600 2922200 5492600 3283900 3555800 3409000 3180000 3317300 1 1 1 1 1 1 1 1 1 1 1 2228600 3557900 1861 3747500 3042200 5548100 3244600 3394700 3352400 3249900 3441700 2075100 3320600 197900 3836600 2922200 5492600 3283900 3555800 3409000 3180000 3317300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 444610000 444610000 0 4155 1865 3884 23416 28149 28149 1 EIKDILIQYDR Unmodified 1404.7613 0.76127986 1340 P62249 RPS16 40S ribosomal protein S16 yes yes 0 0 0 1 By MS/MS By MS/MS 5.33 1.18 1 2 3 4 2 7 5 63.072 63.171 2;3 6.2268E-07 20588 20211116_3435_TMUAki_TMT10x_P_F7 134.68 98.26 203530000 346170000 2085200 326440000 302360000 380440000 250220000 294960000 288750000 272480000 284540000 189510000 322940000 18759000 335230000 288640000 382320000 257720000 303530000 291910000 267040000 274610000 16 16 9 16 16 16 16 16 16 16 16 112700000 187450000 1183600 181230000 214350000 288990000 170720000 161720000 161080000 150910000 153820000 104940000 174890000 11603000 186930000 204480000 284900000 175150000 170530000 164030000 147840000 148610000 10 10 6 10 10 10 10 10 10 10 10 90830000 158720000 901700 145220000 88013000 91450000 79495000 133230000 127670000 121560000 130720000 84569000 148050000 7155900 148290000 84155000 97419000 82572000 133000000 127880000 119210000 126010000 6 6 3 6 6 6 6 6 6 6 6 18177000000 10213000000 7963900000 4156 1340 3885 23417;23418;23419;23420;23421;23422;23423;23424;23425;23426;23427;23428 28150;28151;28152;28153;28154;28155;28156;28157;28158;28159;28160;28161;28162;28163;28164 28158 15 EIKDTEKEVDDLTAELK Unmodified 1974.9997 0.99973181 2946 Q9NTJ3;Q9NTJ3-2 SMC4 Structural maintenance of chromosomes protein 4 yes no 0 0 0 2 By MS/MS 2 0 1 1 65.771 65.461 4 0.017267 21941 20211116_3429_TMUAki_TMT10x_P_F2 52.19 29.969 7038400 12424000 195670 11704000 11054000 18091000 10613000 9143700 8458500 9036800 9917200 6554900 11590000 822130 12086000 10600000 17835000 10722000 9745000 8751100 8830200 9521600 1 1 1 1 1 1 1 1 1 1 1 7038400 12424000 195670 11704000 11054000 18091000 10613000 9143700 8458500 9036800 9917200 6554900 11590000 822130 12086000 10600000 17835000 10722000 9745000 8751100 8830200 9521600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 498520000 498520000 0 4157 2946 3886 23429 28165 28165 1 EILAELTGR Unmodified 1000.5553 0.55530983 557 P08559;P08559-3;P08559-4;P08559-2 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 62.516 62.534 2 0.0038105 19531 20211116_3431_TMUAki_TMT10x_P_F4 80.676 36.904 12746000 20134000 0 21632000 17219000 19949000 13293000 13519000 13196000 12186000 15538000 11867000 18793000 1066200 21937000 16408000 20282000 13686000 14030000 13512000 11956000 14917000 2 2 0 2 2 2 2 2 2 2 2 7803600 11678000 0 12949000 12072000 15164000 8642800 8541600 8648800 7533200 9464400 7265700 10902000 685090 13154000 11488000 15163000 8946200 8988600 8827300 7398900 9104700 1 1 0 1 1 1 1 1 1 1 1 4941900 8455600 0 8682700 5146500 4784500 4650000 4977200 4547200 4652700 6074100 4601200 7890800 381150 8783400 4920200 5118900 4739500 5041000 4684600 4557400 5812200 1 1 0 1 1 1 1 1 1 1 1 1112400000 465120000 647240000 4158 557 3887 23430;23431;23432 28166;28167 28166 2 EILDKFTEEVVK Unmodified 1448.7763 0.77626123 1088 P49189;P49189-2;P49189-3 ALDH9A1 4-trimethylaminobutyraldehyde dehydrogenase yes no 0 0 0 1 By MS/MS 2 0 1 1 72.652 72.539 3 0.0058094 23463 20211116_3440_TMUAki_TMT10x_S_F2 65.956 40.133 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4159 1088 3888 23433 28168 28168 1 EILEPLR Unmodified 868.50182 0.5018177 3361 yes yes 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 51.856 51.689 2 0.0060531 14962 20211116_3440_TMUAki_TMT10x_S_F2 105.39 2.6716 + 4817000 7358600 132050 8787700 4644700 4527200 4206600 5452200 5701000 5909100 6801500 4486100 6871700 520020 8800200 4450600 4895600 4336100 5510400 5773400 5752300 6527100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4817000 7358600 132050 8787700 4644700 4527200 4206600 5452200 5701000 5909100 6801500 4486100 6871700 520020 8800200 4450600 4895600 4336100 5510400 5773400 5752300 6527100 1 1 1 1 1 1 1 1 1 1 1 263070000 0 263070000 4160 3361 3889 23434;23435 28169;28170 28170 2 EILGTAQSVGCNVDGR Unmodified 1674.7995 0.79953264 864 P30050;P30050-2 RPL12 60S ribosomal protein L12 yes no 0 0 0 0 By MS/MS By MS/MS 4 1.07 1 4 4 4 1 6 8 47.403 47.485 2;3 8.5064E-124 13345 20211116_3431_TMUAki_TMT10x_P_F4 379.37 299.13 35395000 61234000 476990 72713000 67542000 76951000 43687000 55841000 62059000 48486000 56835000 32957000 57181000 3531800 73432000 64173000 77657000 46130000 57620000 62145000 47657000 54988000 17 17 9 17 17 17 17 17 17 17 17 23316000 38874000 299540 46644000 59232000 67907000 36035000 37959000 40138000 32820000 37749000 21710000 36303000 2442300 47354000 56212000 67195000 37892000 39952000 40569000 32265000 36489000 11 11 5 11 11 11 11 11 11 11 11 12078000 22360000 177450 26069000 8310400 9043600 7651800 17882000 21921000 15666000 19086000 11247000 20878000 1089500 26078000 7961000 10462000 8237700 17669000 21576000 15392000 18499000 6 6 4 6 6 6 6 6 6 6 6 15730000000 10282000000 5447400000 4161 864 3890 23436;23437;23438;23439;23440;23441;23442;23443;23444;23445;23446;23447;23448;23449 28171;28172;28173;28174;28175;28176;28177;28178;28179;28180;28181;28182;28183;28184;28185;28186;28187;28188;28189;28190 28179 20 EILGTAQSVGCNVDGRHPHDIIDDINSGAVECPAS Unmodified 3702.7002 0.70023588 864 P30050;P30050-2 RPL12 60S ribosomal protein L12 yes no 0 0 0 1 By MS/MS By MS/MS 4.18 1.19 1 2 4 2 2 5 6 62.717 62.645 4;5 4.8251E-74 19040 20211116_3445_TMUAki_TMT10x_S_F6 232.47 226.24 20387000 34735000 63583 31480000 26750000 28185000 20988000 24764000 21185000 22911000 26853000 18982000 32399000 988440 32295000 25499000 28839000 21597000 25295000 21745000 22452000 25728000 16 16 6 16 16 16 16 16 16 16 16 8120400 12690000 31104 13035000 8533300 16138000 9053500 9422000 8453400 9167500 10422000 7560000 11843000 574450 13320000 8188400 16098000 9137600 9911000 8696100 8963900 9993200 7 7 4 7 7 7 7 7 7 7 7 12267000 22044000 32479 18445000 18217000 12046000 11935000 15342000 12732000 13743000 16430000 11422000 20556000 413990 18976000 17311000 12741000 12459000 15384000 13049000 13488000 15735000 9 9 2 9 9 9 9 9 9 9 9 23395000000 12567000000 10828000000 4162 864 3891 23450;23451;23452;23453;23454;23455;23456;23457;23458;23459;23460 28191;28192;28193;28194;28195;28196;28197;28198;28199;28200;28201;28202;28203;28204;28205;28206 28206 16 EILIPVFK Unmodified 957.5899 0.58990443 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 By MS/MS By MS/MS 5.64 2.42 2 2 2 2 3 6 5 76.036 76.046 2;3 0.0029 26670 20211116_3439_TMUAki_TMT10x_S_F1 103.92 63.815 126890000 202780000 739030 202520000 117720000 169160000 145460000 110120000 117800000 128870000 145070000 118150000 189210000 10579000 206120000 113590000 173060000 145240000 115510000 122020000 125090000 139100000 11 11 7 11 11 11 11 11 11 11 11 62491000 97565000 131550 96257000 62884000 102650000 71758000 51507000 56757000 62148000 67612000 58183000 91034000 4943100 98386000 60503000 103030000 71859000 55268000 58782000 60258000 64887000 6 6 4 6 6 6 6 6 6 6 6 64398000 105210000 607480 106260000 54840000 66510000 73698000 58617000 61042000 66726000 77454000 59964000 98178000 5635900 107740000 53085000 70031000 73377000 60239000 63236000 64834000 74209000 5 5 3 5 5 5 5 5 5 5 5 13753000000 8130200000 5622700000 4163 1200 3892 23461;23462;23463;23464;23465;23466;23467;23468;23469;23470;23471 28207;28208;28209;28210;28211;28212;28213;28214;28215;28216;28217;28218 28215 12 EILSEVER Unmodified 973.50803 0.50802529 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 44.605 44.47 2 0.00043647 11777 20211116_3428_TMUAki_TMT10x_P_F1 140.5 34.934 19073000 28914000 0 33901000 38443000 29225000 19712000 20675000 23512000 17803000 25665000 17758000 26998000 1698900 34162000 36380000 29869000 21092000 21367000 23829000 17506000 24692000 6 6 0 6 6 6 6 6 6 6 6 11019000 16324000 0 19321000 30794000 22885000 12407000 11401000 13576000 9867400 14704000 10259000 15244000 1126700 19552000 29061000 22836000 13583000 12125000 13800000 9700200 14149000 3 3 0 3 3 3 3 3 3 3 3 8054300 12589000 0 14579000 7648700 6340000 7304600 9274200 9935700 7935800 10961000 7498600 11755000 572150 14610000 7319400 7033000 7508800 9241200 10029000 7805700 10542000 3 3 0 3 3 3 3 3 3 3 3 2047500000 1500800000 546790000 4164 1094 3893 23472;23473;23474;23475;23476;23477 28219;28220;28221;28222;28223;28224 28219 6 EILSPLR Unmodified 826.49125 0.49125301 3261 Q9Y334;Q9Y334-2 VWA7 von Willebrand factor A domain-containing protein 7 yes no 0 0 0 0 By MS/MS By MS/MS 3.86 1.46 2 1 1 2 1 4 3 44.161 44.182 2 0.044779 13542 20211116_3430_TMUAki_TMT10x_P_F3 71.949 13.27 30677000 45655000 377420 50748000 46736000 46155000 31042000 33739000 33281000 31607000 38173000 28563000 42620000 2664600 51343000 44412000 47024000 32377000 34866000 33933000 30957000 36673000 8 8 2 8 8 8 8 8 8 8 8 20592000 30248000 0 33169000 37477000 37206000 21152000 21761000 22018000 20692000 25386000 19170000 28235000 1584000 33692000 35501000 37307000 22335000 22872000 22481000 20253000 24385000 5 5 0 5 5 5 5 5 5 5 5 10086000 15407000 377420 17579000 9259200 8949600 9890600 11978000 11263000 10915000 12787000 9392900 14384000 1080700 17651000 8910700 9717600 10042000 11994000 11452000 10704000 12288000 3 3 2 3 3 3 3 3 3 3 3 7008400000 5015300000 1993000000 4165 3261 3894 23478;23479;23480;23481;23482;23483;23484 28225;28226;28227;28228;28229 28226 5 EILVGDVGQTVDDPYATFVK Unmodified 2165.0892 0.089215523 787 P23528 CFL1 Cofilin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.54 1.42 4 5 23 6 8 5 1 20 32 65.444 65.413 2;3;4 9.7753E-64 28446 20211116_3441_TMUAki_TMT10x_S_F3 257.8 233.55 340080000 520750000 2868400 677940000 283020000 283960000 325950000 127740000 152160000 160610000 314840000 316640000 486500000 25212000 674620000 272440000 310070000 323000000 138740000 168170000 155500000 298680000 53 53 30 53 53 53 53 53 53 53 53 165320000 249650000 304440 323740000 120240000 160650000 126920000 57665000 68642000 70318000 144690000 153910000 233230000 9690700 322590000 115340000 171410000 126590000 64206000 75080000 68155000 137220000 16 16 5 16 16 16 16 16 16 16 16 174760000 271100000 2563900 354210000 162780000 123310000 199030000 70072000 83518000 90290000 170150000 162730000 253270000 15521000 352030000 157110000 138660000 196410000 74536000 93094000 87349000 161460000 37 37 25 37 37 37 37 37 37 37 37 89461000000 42790000000 46671000000 4166 787 3895 23485;23486;23487;23488;23489;23490;23491;23492;23493;23494;23495;23496;23497;23498;23499;23500;23501;23502;23503;23504;23505;23506;23507;23508;23509;23510;23511;23512;23513;23514;23515;23516;23517;23518;23519;23520;23521;23522;23523;23524;23525;23526;23527;23528;23529;23530;23531;23532;23533;23534;23535;23536 28230;28231;28232;28233;28234;28235;28236;28237;28238;28239;28240;28241;28242;28243;28244;28245;28246;28247;28248;28249;28250;28251;28252;28253;28254;28255;28256;28257;28258;28259;28260;28261;28262;28263;28264;28265;28266;28267;28268;28269;28270;28271;28272;28273;28274;28275;28276;28277;28278;28279;28280;28281;28282;28283;28284;28285;28286;28287;28288;28289;28290;28291;28292;28293;28294;28295;28296 28272 67 EILWRPK Unmodified 940.54944 0.54943659 554 P08243;P08243-2;P08243-3 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 45.223 45.139 3 0.086714 12037 20211116_3428_TMUAki_TMT10x_P_F1 41.892 6.643 6723100 11838000 22189 13240000 18495000 16739000 10977000 17786000 18420000 15576000 15051000 6260000 11051000 728220 13460000 17546000 16861000 11758000 17964000 18294000 15303000 14623000 3 3 2 3 3 3 3 3 3 3 3 2463200 4460300 20284 5587700 12618000 10604000 6481700 5655800 6552200 5108800 5298300 2293700 4166100 365350 5695700 11946000 10382000 6897700 5983800 6618100 5012100 5149900 1 1 1 1 1 1 1 1 1 1 1 4259900 7377500 1904.9 7652400 5877500 6135800 4495500 12130000 11867000 10467000 9752600 3966300 6885000 362880 7764600 5600100 6479000 4860500 11981000 11675000 10291000 9473400 2 2 1 2 2 2 2 2 2 2 2 331790000 231050000 100740000 4167 554 3896 23537;23538;23539 28297 28297 1 EIMLAAK Oxidation (M) 790.42588 0.42587556 608 P10606 COX5B Cytochrome c oxidase subunit 5B, mitochondrial yes yes 0 0 1 0 By matching By MS/MS 4.33 0.471 2 1 1 2 42.654 42.796 2 0.078087 10661 20211116_3444_TMUAki_TMT10x_S_F5 66.993 22.02 1243100 2149700 17500 2603500 1275900 1227000 1232700 1798200 2079500 1537000 1930400 1157600 2007600 119830 2603400 1223400 1347700 1278900 1791700 2073200 1511900 1866800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1243100 2149700 17500 2603500 1275900 1227000 1232700 1798200 2079500 1537000 1930400 1157600 2007600 119830 2603400 1223400 1347700 1278900 1791700 2073200 1511900 1866800 1 1 1 1 1 1 1 1 1 1 1 125160000 58730000 66434000 4168 608 3897 23540;23541;23542 28298 28298 590 1 EINDCIGGTVLNISK Unmodified 1631.8189 0.8188711 377 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.17 0.687 1 3 2 4 2 55.162 55.161 3 0.0020324 20172 20211116_3445_TMUAki_TMT10x_S_F6 62.203 42.879 14434000 24843000 634470 26780000 13718000 15360000 15417000 18785000 17878000 18085000 17914000 13444000 23188000 1777900 27012000 13234000 16429000 15625000 18906000 18082000 17691000 17280000 3 3 3 3 3 3 3 3 3 3 3 112960 196190 3228.1 189870 144760 235920 117180 136050 134370 129860 127810 105200 183040 12819 194830 138310 235260 120840 143180 135710 127080 123490 2 2 2 2 2 2 2 2 2 2 2 14321000 24646000 631250 26590000 13573000 15124000 15300000 18649000 17744000 17955000 17787000 13339000 23005000 1765100 26817000 13096000 16194000 15504000 18762000 17946000 17564000 17157000 1 1 1 1 1 1 1 1 1 1 1 1094300000 13085000 1081200000 4169 377 3898 23543;23544;23545;23546;23547;23548 28299;28300;28301;28302;28303;28304 28304 6 EIPIVHR Unmodified 862.50249 0.5024864 1411 P67812;P67812-4;P67812-3;P67812-2 SEC11A Signal peptidase complex catalytic subunit SEC11A yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 3 1 32.534 32.57 3 0.020687 6050 20211116_3444_TMUAki_TMT10x_S_F5 66.087 45.532 3914400 5985800 58506 6296500 6053900 7307000 4798000 3746300 4544400 4235500 5483300 3644500 5586500 339150 6416700 5772200 7301600 4924600 4003300 4667600 4116400 5260400 3 3 1 3 3 3 3 3 3 3 3 3491300 5349200 0 5513100 5573500 6806300 4195700 3338400 4031900 3725800 4942200 3250100 4992000 249020 5632100 5305000 6776100 4322900 3580800 4141300 3622800 4739300 1 1 0 1 1 1 1 1 1 1 1 423120 636590 58506 783380 480400 500760 602290 407890 512490 509690 541090 394400 594550 90132 784580 467230 525490 601780 422450 526320 493590 521090 2 2 1 2 2 2 2 2 2 2 2 197170000 182560000 14612000 4170 1411 3899 23549;23550;23551;23552 28305;28306;28307 28306 3 EIPSERDFFQEVK Unmodified 1622.794 0.79403656 112 O14530;O14530-2 TXNDC9 Thioredoxin domain-containing protein 9 yes no 0 0 0 1 By matching By MS/MS 4 0 2 1 1 59.584 59.594 3 0.0001094 18793 20211116_3442_TMUAki_TMT10x_S_F4 93.716 71.519 9785400 16315000 208980 17483000 12474000 9789600 9186300 10659000 9694400 10146000 12309000 9112700 15228000 1043700 17638000 11891000 10467000 9505700 10779000 9933000 9930500 11793000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9785400 16315000 208980 17483000 12474000 9789600 9186300 10659000 9694400 10146000 12309000 9112700 15228000 1043700 17638000 11891000 10467000 9505700 10779000 9933000 9930500 11793000 2 2 2 2 2 2 2 2 2 2 2 514640000 275030000 239610000 4171 112 3900 23553;23554 28308;28309 28308 2 EIPSHVLSK Unmodified 1008.5604 0.56039521 1793 Q15369;Q15369-2 TCEB1 Transcription elongation factor B polypeptide 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 38.419 38.483 3 5.6528E-05 10334 20211116_3433_TMUAki_TMT10x_P_F5 100.48 60.475 2015100 3290500 22308 3129600 2729900 2686300 2200700 1914500 1992700 1798800 2463800 1876500 3069800 197870 3197500 2605600 2746600 2253500 1982000 2053000 1761500 2362200 2 2 2 2 2 2 2 2 2 2 2 1194900 1883100 21728 1806100 1903600 1964100 1310100 1054200 1090200 1029100 1361500 1112700 1756900 129240 1850300 1811700 1970700 1353100 1117000 1128400 1006100 1305000 1 1 1 1 1 1 1 1 1 1 1 820250 1407400 580.58 1323600 826290 722160 890580 860260 902470 769670 1102300 763740 1312900 68630 1347200 793930 775880 900360 864970 924670 755440 1057200 1 1 1 1 1 1 1 1 1 1 1 129890000 34908000 94977000 4172 1793 3901 23555;23556;23557 28310;28311;28312 28310 3 EIPTDAPWEAQHADKWDK Unmodified 2135.9912 0.99123281 757 P21397;P21397-2 MAOA Amine oxidase [flavin-containing] A yes no 0 0 0 1 By MS/MS 6 0 1 1 54.208 54.302 4 7.6365E-12 15217 20211116_3434_TMUAki_TMT10x_P_F6 126.88 106.79 3485800 6578700 63382 7233300 6295400 7557400 5543800 3772900 2764500 3135100 4474100 3246100 6141000 387420 7337800 6021300 7593900 5576600 4008000 2994700 3088200 4263000 1 1 1 1 1 1 1 1 1 1 1 3485800 6578700 63382 7233300 6295400 7557400 5543800 3772900 2764500 3135100 4474100 3246100 6141000 387420 7337800 6021300 7593900 5576600 4008000 2994700 3088200 4263000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 739810000 739810000 0 4173 757 3902 23558 28313 28313 1 EIPYTFEDR Unmodified 1168.5401 0.5400537 915 P34897;P34897-3;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 51.782 51.666 2 9.7987E-07 16628 20211116_3430_TMUAki_TMT10x_P_F3 196.99 114.72 21324000 35050000 298800 42427000 33832000 38049000 24315000 31656000 32472000 29158000 31463000 19857000 32733000 2193200 42696000 32217000 38889000 25414000 32434000 32642000 28580000 30383000 8 8 7 8 8 8 8 8 8 8 8 10317000 16715000 156950 19959000 24817000 28216000 15814000 15074000 15726000 14156000 14917000 9607100 15609000 1176400 20256000 23577000 27940000 16508000 15962000 15974000 13863000 14415000 4 4 3 4 4 4 4 4 4 4 4 11007000 18335000 141840 22467000 9014500 9833800 8501400 16582000 16746000 15002000 16546000 10250000 17124000 1016800 22439000 8639200 10949000 8905400 16472000 16668000 14717000 15968000 4 4 4 4 4 4 4 4 4 4 4 3175400000 2102600000 1072800000 4174 915 3903 23559;23560;23561;23562;23563;23564;23565;23566 28314;28315;28316;28317;28318;28319;28320;28321 28316 8 EIQEPDPTYEEK Unmodified 1476.662 0.66201933 260 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 0 0 0 0 By MS/MS 1 0 1 1 44.001 44.001 3 0.0012196 11585 20211116_3428_TMUAki_TMT10x_P_F1 67.952 53.988 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4175 260 3904 23567 28322 28322 1 EIQEPLESVEVNQETFR Unmodified 2045.9906 0.99056411 1080 P48681 NES Nestin yes yes 0 0 0 0 By MS/MS By MS/MS 1.83 0.898 3 1 2 3 3 62.707 62.459 2;3 8.3787E-30 19172 20211116_3428_TMUAki_TMT10x_P_F1 168.93 134.39 16359000 26190000 342040 24148000 18327000 24914000 19201000 18605000 18549000 18421000 22135000 15234000 24431000 1671600 24791000 17613000 25192000 19411000 19229000 19027000 17998000 21242000 7 7 6 7 7 7 7 7 7 7 7 7971300 13239000 145920 12199000 9158800 17439000 9820700 10144000 9915100 9579700 10881000 7422900 12350000 782470 12597000 8805300 17278000 9929800 10665000 10117000 9379300 10466000 4 4 3 4 4 4 4 4 4 4 4 8387300 12951000 196120 11949000 9168200 7475500 9380400 8460600 8634300 8840900 11255000 7810900 12081000 889080 12194000 8808100 7913600 9480800 8563900 8909600 8618800 10776000 3 3 3 3 3 3 3 3 3 3 3 2461900000 1002500000 1459300000 4176 1080 3905 23568;23569;23570;23571;23572;23573 28323;28324;28325;28326;28327;28328;28329;28330 28325 8 EIQGFFNIPVDNLR Unmodified 1660.8573 0.85730551 259 O60256;O60256-4;O60256-2;O60256-3 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 yes no 0 0 0 0 By matching By MS/MS 6.5 0.5 2 2 2 2 78.154 78.172 2;3 1.1027E-05 27505 20211116_3446_TMUAki_TMT10x_S_F7 102.03 59.226 18525000 32646000 165260 21896000 26983000 26576000 23634000 19722000 19917000 21339000 24052000 17250000 30422000 1808300 23167000 25799000 26631000 24033000 20446000 20572000 20774000 23074000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18525000 32646000 165260 21896000 26983000 26576000 23634000 19722000 19917000 21339000 24052000 17250000 30422000 1808300 23167000 25799000 26631000 24033000 20446000 20572000 20774000 23074000 2 2 2 2 2 2 2 2 2 2 2 2501900000 1303800000 1198100000 4177 259 3906 23574;23575;23576;23577 28331;28332 28332 2 EIQGFFSFPVDNLR Unmodified 1667.8308 0.83075641 1714 Q14558;Q14558-2 PRPSAP1 Phosphoribosyl pyrophosphate synthase-associated protein 1 yes no 0 0 0 0 By MS/MS 7 0 1 1 78.994 79.043 2 1.4335E-09 27410 20211116_3435_TMUAki_TMT10x_P_F7 118.76 73.916 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4178 1714 3907 23578 28333 28333 1 EIQSSNLETAMSVIGDRR Oxidation (M) 2020.9848 0.98476723 3001 Q9NX55 HYPK Huntingtin-interacting protein K yes yes 0 0 1 1 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 45.975 46.095 3 5.9865E-06 13117 20211116_3442_TMUAki_TMT10x_S_F4 88.319 75.594 6301700 10255000 60274 12240000 9766900 11427000 7019100 9809400 11482000 9388100 9186100 5867400 9576000 565370 12334000 9295500 11655000 7401600 10043000 11404000 9186300 8932600 6 6 4 6 6 6 6 6 6 6 6 3108300 4858100 54053 6026900 7265100 8916500 4943600 4685900 5483500 4580000 4610300 2894500 4537500 366290 6109100 6911000 8810200 5152600 4974600 5523900 4477500 4474400 3 3 3 3 3 3 3 3 3 3 3 3193400 5396400 6221.4 6212900 2501800 2510500 2075500 5123500 5998400 4808100 4575900 2973000 5038500 199080 6225200 2384500 2844600 2249000 5067900 5880200 4708800 4458200 3 3 1 3 3 3 3 3 3 3 3 1251700000 753540000 498210000 4179 3001 3908 23579;23580;23581;23582;23583 28334;28335;28336;28337;28338;28339;28340 28339 3068 7 EIQSSNLETAMSVIGDRR Unmodified 2004.9899 0.9898526 3001 Q9NX55 HYPK Huntingtin-interacting protein K yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 59.197 59.341 3 1.6137E-12 17359 20211116_3444_TMUAki_TMT10x_S_F5 137.68 113.13 11975000 18079000 99352 20712000 14401000 16477000 12278000 11023000 10000000 10275000 13620000 11150000 16879000 1036800 20880000 13755000 16925000 12494000 11460000 10402000 10066000 13027000 3 3 2 3 3 3 3 3 3 3 3 7691400 11176000 99352 13076000 10206000 13389000 8889700 7460900 6785400 6660400 8848100 7162200 10435000 765480 13210000 9758800 13487000 9020900 7860900 7068300 6537900 8471600 2 2 2 2 2 2 2 2 2 2 2 4283800 6902600 0 7636000 4194900 3088200 3388100 3562200 3214700 3614400 4772200 3988000 6443600 271350 7670200 3996600 3437200 3473500 3599400 3333300 3527900 4555300 1 1 0 1 1 1 1 1 1 1 1 1784800000 896910000 887920000 4180 3001 3908 23584;23585;23586 28341;28342;28343 28343 3 EIQTAVR Unmodified 815.45012 0.45011648 290;528;2613 Q93079;Q99877;P62807;P58876;O60814;Q5QNW6;Q99879;Q5QNW6-2;P57053;P33778;Q16778;P23527;P06899;Q99880;Q96A08 HIST1H2BH;HIST1H2BN;HIST1H2BC;HIST1H2BD;HIST1H2BK;HIST2H2BF;HIST1H2BM;H2BFS;HIST1H2BB;HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST1H2BL;HIST1H2BA Histone H2B type 1-H;Histone H2B type 1-N;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type 2-F;Histone H2B type 1-M;Histone H2B type F-S;Histone H2B type 1-B;Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 1-L;Histone H2B type 1-A no no 0 0 0 0 By MS/MS By MS/MS 3 1.35 2 2 3 2 2 5 6 28.375 28.343 2 0.0012235 7747 20211116_3429_TMUAki_TMT10x_P_F2 142.36 65.516 55118000 94036000 84156 78021000 68054000 83315000 58234000 52816000 51852000 51437000 74799000 51316000 87685000 3802500 80298000 64973000 83864000 59343000 55185000 53104000 50293000 71445000 12 12 1 11 12 11 11 11 11 12 12 17914000 29054000 0 28708000 19249000 42283000 12513000 19211000 14039000 17495000 22024000 16677000 27110000 1210300 29515000 18269000 41719000 13050000 20645000 14499000 17158000 20998000 5 5 0 5 5 5 4 5 5 5 5 37204000 64981000 84156 49313000 48805000 41031000 45720000 33605000 37813000 33942000 52775000 34639000 60576000 2592200 50784000 46704000 42144000 46293000 34540000 38605000 33135000 50447000 7 7 1 6 7 6 7 6 6 7 7 13062000000 5595500000 7466200000 4181 290;528;2613 3909 23587;23588;23589;23590;23591;23592;23593;23594;23595;23596;23597 28344;28345;28346;28347;28348;28349;28350;28351;28352;28353;28354;28355;28356;28357 28345 14 EIQTTTGNQQVLVR Unmodified 1585.8424 0.84238373 2270 Q8TC12;Q8TC12-2;Q8TC12-3 RDH11 Retinol dehydrogenase 11 yes no 0 0 0 0 By MS/MS 4 0 1 1 37.575 37.733 3 3.8064E-20 9923 20211116_3442_TMUAki_TMT10x_S_F4 178.67 155.29 327970 525080 11649 598050 312220 308350 396980 289350 318610 297160 479630 305420 490230 32572 600620 301870 331570 395820 295380 333280 289900 457700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 327970 525080 11649 598050 312220 308350 396980 289350 318610 297160 479630 305420 490230 32572 600620 301870 331570 395820 295380 333280 289900 457700 2 2 1 2 2 2 2 2 2 2 2 14680000 0 14680000 4182 2270 3910 23598 28358;28359 28359 2 EIQVQHPAAK Unmodified 1119.6037 0.60365701 1094 P49368 CCT3 T-complex protein 1 subunit gamma yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 31.529 31.512 3 0.00127 7263 20211116_3433_TMUAki_TMT10x_P_F5 79.86 55.632 2831100 4558800 17498 4198500 4489000 5207000 3080600 2556600 3234700 2411000 3414300 2636200 4252500 274250 4323700 4269900 5182800 3203200 2728800 3290400 2360700 3288100 2 2 2 2 2 2 2 2 2 2 2 2831100 4558800 17498 4198500 4489000 5207000 3080600 2556600 3234700 2411000 3414300 2636200 4252500 274250 4323700 4269900 5182800 3203200 2728800 3290400 2360700 3288100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 355240000 355240000 0 4183 1094 3911 23599;23600 28360;28361 28361 2 EIRPALELLEPIEQK Unmodified 1776.9986 0.99855002 1133 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 1 By MS/MS By MS/MS 4.2 1.64 2 2 7 6 6 4 3 16 14 71.253 71.198 2;3;4 1.3139E-35 22786 20211116_3433_TMUAki_TMT10x_P_F5 241.42 201.57 351230000 551330000 2687800 587270000 357820000 390880000 372070000 228940000 240280000 265670000 372730000 327040000 514580000 30487000 593640000 343540000 406670000 372580000 242050000 254910000 257960000 355460000 52 52 35 52 52 52 52 52 52 52 52 154150000 226380000 885790 243630000 141820000 223290000 155370000 98417000 102650000 112290000 154360000 143530000 211300000 12916000 247020000 136340000 225920000 155250000 106780000 108570000 109100000 147310000 25 25 14 25 25 25 25 25 25 25 25 197080000 324950000 1802000 343640000 216000000 167590000 216700000 130530000 137630000 153380000 218370000 183510000 303280000 17572000 346620000 207190000 180750000 217320000 135260000 146340000 148860000 208150000 27 27 21 27 27 27 27 27 27 27 27 64102000000 31561000000 32541000000 4184 1133 3912 23601;23602;23603;23604;23605;23606;23607;23608;23609;23610;23611;23612;23613;23614;23615;23616;23617;23618;23619;23620;23621;23622;23623;23624;23625;23626;23627;23628;23629;23630 28362;28363;28364;28365;28366;28367;28368;28369;28370;28371;28372;28373;28374;28375;28376;28377;28378;28379;28380;28381;28382;28383;28384;28385;28386;28387;28388;28389;28390;28391;28392;28393;28394;28395;28396;28397;28398;28399;28400;28401;28402;28403;28404;28405;28406;28407;28408;28409;28410;28411;28412;28413;28414;28415;28416;28417;28418 28382 57 EIRPVCR Unmodified 928.49127 0.49126979 1665 Q13838;Q13838-2 DDX39B Spliceosome RNA helicase DDX39B yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 25.456 25.449 3 0.00084304 5413 20211116_3433_TMUAki_TMT10x_P_F5 135.77 109.87 903900 1373500 16657 1194000 1036000 1544200 942270 742070 850850 854970 1127900 841750 1280900 92178 1236000 991990 1533500 957850 798350 879420 830360 1079500 3 3 2 3 3 3 3 3 3 3 3 903900 1373500 16657 1194000 1036000 1544200 942270 742070 850850 854970 1127900 841750 1280900 92178 1236000 991990 1533500 957850 798350 879420 830360 1079500 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 47089000 47089000 0 4185 1665 3913 23631;23632 28419;28420;28421 28421 3 EISAQIR Unmodified 815.45012 0.45011648 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 1.12 1 1 1 1 2 2 32.945 32.877 2 0.0020307 10254 20211116_3441_TMUAki_TMT10x_S_F3 171.47 31.923 2910800 4526300 17290 4589400 3970500 4229100 3317300 2572600 2885300 2689500 3600300 2710400 4223800 272280 4672100 3791800 4293400 3385700 2702700 2979600 2621900 3450900 4 4 4 4 4 4 4 4 4 4 4 1708900 2641900 7362.4 2665200 2796000 3041500 1914600 1629400 1793500 1588800 2172300 1591200 2465200 163760 2722900 2659200 3043500 1984400 1726800 1843300 1553400 2083800 2 2 2 2 2 2 2 2 2 2 2 1202000 1884400 9927.4 1924200 1174600 1187700 1402700 943140 1091800 1100800 1428000 1119200 1758500 108520 1949200 1132600 1249900 1401300 975980 1136200 1068600 1367100 2 2 2 2 2 2 2 2 2 2 2 160810000 92585000 68225000 4186 629 3914 23633;23634;23635;23636 28422;28423;28424;28425 28424 4 EISEGDEVEVYSR Unmodified 1510.6787 0.67873203 1148 P51114;P51114-2 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 43.898 43.777 2 4.754E-65 11490 20211116_3428_TMUAki_TMT10x_P_F1 325.73 294.31 5953800 8773000 36275 11573000 13234000 12952000 7433500 8290300 9777800 6787400 8029900 5543500 8196600 581130 11629000 12543000 13005000 7916000 8619300 9782700 6690800 7800200 6 6 2 6 6 6 6 6 6 6 6 4278900 6236000 36275 8266000 11990000 11792000 6261300 6338400 7440100 5242600 5798600 3984100 5826500 459630 8342000 11353000 11673000 6687200 6686900 7459200 5165300 5644600 4 4 2 4 4 4 4 4 4 4 4 1674900 2536900 0 3307300 1243800 1160200 1172100 1951900 2337800 1544800 2231200 1559400 2370100 121500 3287500 1190100 1332200 1228800 1932400 2323500 1525500 2155700 2 2 0 2 2 2 2 2 2 2 2 560020000 411880000 148140000 4187 1148 3915 23637;23638;23639;23640 28426;28427;28428;28429;28430;28431 28427 6 EISESTPVEEVEALFK Unmodified 1805.8935 0.89347583 2349 Q92615 LARP4B La-related protein 4B yes yes 0 0 0 0 By matching By MS/MS 1 0 2 1 1 80.274 80.255 3 0.0087456 28335 20211116_3439_TMUAki_TMT10x_S_F1 52.42 38.741 1258300 2158100 23348 2104200 1555500 1601300 1782500 1311600 1323700 1403000 1648700 1171800 2013500 130250 2142900 1498600 1655800 1781900 1350900 1378200 1366500 1580400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1258300 2158100 23348 2104200 1555500 1601300 1782500 1311600 1323700 1403000 1648700 1171800 2013500 130250 2142900 1498600 1655800 1781900 1350900 1378200 1366500 1580400 1 1 1 1 1 1 1 1 1 1 1 718540000 442230000 276310000 4188 2349 3916 23641;23642 28432 28432 1 EISFAYEVLSNPEKR Unmodified 1780.8996 0.89956426 298 O60884 DNAJA2 DnaJ homolog subfamily A member 2 yes yes 0 0 0 1 By MS/MS By MS/MS 5.83 1.07 1 1 2 2 4 2 64.891 65.122 3 1.5491E-37 21427 20211116_3435_TMUAki_TMT10x_P_F7 238.22 200.04 84997000 133500000 526260 147120000 90710000 116360000 94909000 65455000 60444000 71186000 92638000 79143000 124620000 7368800 148670000 87098000 119290000 94984000 69291000 64142000 69288000 88368000 9 9 5 9 9 9 9 9 9 9 9 53194000 80941000 405070 89454000 56118000 86774000 59405000 40430000 38064000 43310000 55514000 49530000 75559000 4635700 90616000 53904000 87524000 59425000 43532000 40276000 42180000 53013000 5 5 3 5 5 5 5 5 5 5 5 31803000 52557000 121180 57670000 34591000 29581000 35504000 25025000 22380000 27877000 37124000 29613000 49060000 2733100 58052000 33194000 31766000 35559000 25759000 23866000 27108000 35355000 4 4 2 4 4 4 4 4 4 4 4 10991000000 5881200000 5109300000 4189 298 3917 23643;23644;23645;23646;23647;23648 28433;28434;28435;28436;28437;28438;28439;28440;28441;28442 28438 10 EISLLPDNLLR Unmodified 1281.7293 0.72925145 1771 Q15118;Q15118-2 PDK1 [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 1, mitochondrial yes no 0 0 0 0 By matching By MS/MS 5 0 2 1 1 75.716 75.736 2 3.0676E-05 24109 20211116_3444_TMUAki_TMT10x_S_F5 104.22 70.579 2142600 3555600 23244 3663300 2503600 2270000 2486000 1965400 1959700 2157700 2506400 1995200 3318100 204360 3708800 2401500 2391700 2506200 2019400 2036000 2099400 2400900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2142600 3555600 23244 3663300 2503600 2270000 2486000 1965400 1959700 2157700 2506400 1995200 3318100 204360 3708800 2401500 2391700 2506200 2019400 2036000 2099400 2400900 1 1 1 1 1 1 1 1 1 1 1 331030000 154110000 176920000 4190 1771 3918 23649;23650 28443 28443 1 EISLWFKPEELVDYK Unmodified 1894.9717 0.97166657 770 P22392-2;P22392 NME2 Nucleoside diphosphate kinase B yes no 0 0 0 1 By MS/MS By MS/MS 5.1 1.58 2 2 2 2 1 1 5 5 78.568 78.559 3 2.8217E-19 27683 20211116_3446_TMUAki_TMT10x_S_F7 165.34 152.96 67284000 104920000 932060 102990000 71913000 70394000 83747000 31064000 27441000 39773000 70494000 62654000 97892000 6364200 104720000 69298000 72840000 82586000 33829000 31908000 38485000 66670000 6 6 5 6 6 6 6 6 6 6 6 22452000 33043000 305260 33475000 23104000 33385000 30834000 9988000 9607600 13789000 23339000 20908000 30834000 2155100 34118000 22366000 33490000 30215000 11450000 11190000 13311000 22089000 2 2 2 2 2 2 2 2 2 2 2 44832000 71875000 626800 69519000 48809000 37009000 52913000 21076000 17834000 25983000 47155000 41747000 67058000 4209100 70601000 46932000 39349000 52371000 22379000 20718000 25175000 44581000 4 4 3 4 4 4 4 4 4 4 4 9810800000 5074800000 4736000000 4191 770 3919 23651;23652;23653;23654;23655;23656;23657;23658;23659;23660 28444;28445;28446;28447;28448;28449;28450;28451 28450 8 EISPGSGPGEIR Unmodified 1197.599 0.59896556 220 O43491;O43491-4 EPB41L2 Band 4.1-like protein 2 yes no 0 0 0 0 By MS/MS 2 0 1 1 33.263 33.344 2 0.00024094 7475 20211116_3440_TMUAki_TMT10x_S_F2 94.309 47.883 32578 53592 0 55636 31481 24773 33137 25501 26971 23447 45726 30334 50015 0 56152 30227 27157 33335 25829 28374 22985 43530 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32578 53592 0 55636 31481 24773 33137 25501 26971 23447 45726 30334 50015 0 56152 30227 27157 33335 25829 28374 22985 43530 1 1 0 1 1 1 1 1 1 1 1 1390800 0 1390800 4192 220 3920 23661 28452 28452 1 EISQETAVNPVDIVSTLQALQMLK Oxidation (M) 2642.3837 0.38368298 417 O95251;O95251-2;O95251-4;O95251-3;O95251-5 KAT7 Histone acetyltransferase KAT7 yes no 0 0 1 0 By MS/MS By MS/MS 7.5 0.764 1 1 4 3 3 82.273 82.279 3;4 1.295E-16 29209 20211116_3446_TMUAki_TMT10x_S_F7 122.47 92.372 2519200 3929200 31629 3937300 2763300 4042700 3046200 2527600 2538200 2967400 3459300 2345900 3666400 239070 4017700 2658400 4077900 3059400 2659500 2637100 2880000 3308600 7 7 6 7 7 7 7 7 7 7 7 1399900 2201300 26088 2126000 1353600 2665700 1518700 1415500 1522000 1721100 1967000 1303600 2053700 139730 2182200 1303700 2654200 1532000 1511400 1564000 1668300 1883700 4 4 4 4 4 4 4 4 4 4 4 1119300 1727900 5540.9 1811400 1409600 1377000 1527500 1112100 1016200 1246300 1492300 1042200 1612600 99343 1835500 1354700 1423600 1527400 1148100 1073100 1211600 1424800 3 3 2 3 3 3 3 3 3 3 3 773000000 334400000 438610000 4193 417 3921 23662;23663;23664;23665;23666;23667 28453;28454;28455;28456;28457 28455 313 5 EISQETAVNPVDIVSTLQALQMLK Unmodified 2626.3888 0.38876836 417 O95251;O95251-2;O95251-4;O95251-3;O95251-5 KAT7 Histone acetyltransferase KAT7 yes no 0 0 0 0 By MS/MS 7 0 1 1 82.994 83.021 3 6.8165E-27 29479 20211116_3446_TMUAki_TMT10x_S_F7 161.2 151.92 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4194 417 3921 23668 28458 28458 1 EITALAPSTMK Oxidation (M) 1176.606 0.60602477 1276;1406;1414 P60709;P63261;P68133;P68032;P62736;P63267;P63267-2 ACTB;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle no no 0 0 1 0 By MS/MS By MS/MS 4.76 1.69 1 1 3 4 4 4 4 13 8 46.879 46.995 2;3 4.7493E-06 12534 20211116_3445_TMUAki_TMT10x_S_F6 115.57 92.933 78512000 124650000 392240 135000000 142270000 120670000 86129000 92170000 97379000 79327000 105870000 73100000 116350000 7127100 136780000 134980000 123180000 90648000 94766000 98875000 78004000 101870000 23 23 9 23 23 23 23 23 23 23 23 40607000 62160000 46824 65844000 102690000 87642000 48188000 45447000 48203000 38747000 51713000 37807000 58016000 4013500 67237000 97075000 86991000 51729000 48136000 49162000 38118000 49777000 10 10 2 10 10 10 10 10 10 10 10 37905000 62491000 345420 69156000 39583000 33031000 37941000 46722000 49176000 40580000 54159000 35293000 58336000 3113600 69540000 37910000 36186000 38919000 46629000 49714000 39886000 52091000 13 13 7 13 13 13 13 13 13 13 13 28281000000 17231000000 11051000000 4195 1276;1406;1414 3922 23669;23670;23671;23672;23673;23674;23675;23676;23677;23678;23679;23680;23681;23682;23683;23684;23685;23686;23687;23688;23689 28459;28460;28461;28462;28463;28464;28465;28466;28467;28468;28469;28470;28471;28472;28473;28474;28475;28476;28477;28478;28479;28480;28481;28482;28483 28479 1721 25 EITALAPSTMK Unmodified 1160.6111 0.61111015 1276;1406;1414 P60709;P63261;P68133;P68032;P62736;P63267;P63267-2 ACTB;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle no no 0 0 0 0 By MS/MS By MS/MS 5.6 1.08 3 4 4 4 7 8 53.495 53.753 2;3 1.2439E-29 14929 20211116_3434_TMUAki_TMT10x_P_F6 261.16 180.72 101400000 150790000 1560200 197280000 164220000 118320000 99201000 54524000 47231000 53355000 120430000 94423000 140880000 10407000 196460000 155900000 123960000 102410000 58621000 52921000 52157000 113910000 18 18 13 17 18 18 18 18 18 18 18 46639000 66825000 1046300 80905000 122170000 89741000 56202000 26134000 24457000 25610000 54742000 43432000 62406000 5712900 81342000 115530000 89426000 59475000 29766000 27344000 25034000 51870000 9 9 7 8 9 9 9 9 9 9 9 54761000 83970000 513950 116370000 42051000 28584000 42999000 28389000 22774000 27745000 65692000 50991000 78474000 4693800 115120000 40366000 34530000 42940000 28855000 25576000 27123000 62042000 9 9 6 9 9 9 9 9 9 9 9 20069000000 11412000000 8656900000 4196 1276;1406;1414 3922 23690;23691;23692;23693;23694;23695;23696;23697;23698;23699;23700;23701;23702;23703;23704 28484;28485;28486;28487;28488;28489;28490;28491;28492;28493;28494;28495;28496;28497;28498;28499;28500;28501 28490 18 EITENLMATGDLDQDGR Unmodified 1876.8473 0.84727069 657 P13796 LCP1 Plastin-2 yes yes 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 42.416 42.368 3 0.053445 12938 20211116_3439_TMUAki_TMT10x_S_F1 34.909 12.055 1371700 2427000 13405 3097600 2956100 1956100 1525600 2020700 2624500 1538100 2210900 1277200 2267200 141590 3095600 2798900 2064600 1656300 2036800 2607200 1522000 2145500 3 3 1 3 3 3 3 3 3 3 3 564850 1071100 13405 1427700 2289400 1442100 884190 937090 1272000 674810 976830 526030 1000800 83477 1431500 2160700 1456900 982350 970410 1266600 669860 951450 1 1 1 1 1 1 1 1 1 1 1 806870 1355900 0 1669900 666720 514040 641440 1083600 1352500 863240 1234000 751220 1266400 58118 1664100 638200 607770 673970 1066400 1340600 852170 1194100 2 2 0 2 2 2 2 2 2 2 2 354410000 189330000 165080000 4197 657 3923 23705;23706;23707 28502;28503;28504 28503 3 EITSADSNGNFYMVR Oxidation (M) 1718.757 0.75699912 3364 yes yes 0 0 1 0 By MS/MS 5 0 1 1 68.278 68.308 2 0.040401 21038 20211116_3444_TMUAki_TMT10x_S_F5 57.348 16.852 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4198 3364 3924 23708 28505 28505 3302 1 EIVDPLYGIAEVEIPNIQK Unmodified 2139.1463 0.14633647 1965 Q68EM7;Q68EM7-2;Q68EM7-6;Q68EM7-5;Q68EM7-4 ARHGAP17 Rho GTPase-activating protein 17 yes no 0 0 0 0 By MS/MS 2.75 0.829 2 1 1 4 80.133 80.106 3 3.6758E-06 27795 20211116_3429_TMUAki_TMT10x_P_F2 87.16 68.327 1869900 2488300 0 2976400 1412800 2885700 1744900 1526700 1465300 1619600 1961800 1741000 2323700 135130 3000600 1362200 2914900 1743900 1623600 1520600 1578000 1877100 1 1 0 1 1 1 1 1 1 1 1 1869900 2488300 0 2976400 1412800 2885700 1744900 1526700 1465300 1619600 1961800 1741000 2323700 135130 3000600 1362200 2914900 1743900 1623600 1520600 1578000 1877100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1835600000 1835600000 0 4199 1965 3925 23709;23710;23711;23712 28506;28507 28506 2 EIVHLQAGQCGNQIGAK Unmodified 1821.9156 0.91556545 1418;488 P68371;P04350 TUBB4B;TUBB4A Tubulin beta-4B chain;Tubulin beta-4A chain no no 0 0 0 0 By MS/MS By MS/MS 5 1.45 2 1 4 5 6 3 10 11 40.146 40.226 2;3;4 4.6963E-77 11111 20211116_3433_TMUAki_TMT10x_P_F5 284.15 0 101590000 149070000 1111900 167250000 162580000 149240000 111260000 91673000 94560000 92000000 119920000 94592000 139170000 9362000 169070000 154600000 151850000 115030000 96122000 97829000 89839000 114890000 37 37 24 37 37 37 37 37 37 37 37 70400000 103670000 770120 115540000 139490000 123050000 80927000 63870000 65133000 64403000 82680000 65550000 96783000 6984000 117150000 132290000 123560000 84661000 67941000 67575000 62877000 79215000 18 18 10 18 18 18 18 18 18 18 18 31191000 45396000 341760 51706000 23089000 26190000 30337000 27803000 29427000 27597000 37237000 29041000 42383000 2378000 51922000 22315000 28291000 30365000 28180000 30254000 26961000 35679000 19 19 14 19 19 19 19 19 19 19 19 41217000000 29330000000 11887000000 4200 1418;488 3926 23713;23714;23715;23716;23717;23718;23719;23720;23721;23722;23723;23724;23725;23726;23727;23728;23729;23730;23731;23732;23733 28508;28509;28510;28511;28512;28513;28514;28515;28516;28517;28518;28519;28520;28521;28522;28523;28524;28525;28526;28527;28528;28529;28530;28531;28532;28533;28534;28535;28536;28537;28538;28539;28540;28541;28542;28543;28544;28545;28546;28547 28517 40 EIVKFEPQVDTEAEDMISAVK Oxidation (M) 2393.1672 0.16720785 3135 Q9UIG0;Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B yes no 0 0 1 1 By MS/MS 3 0 1 1 65.886 65.595 3 0.016181 22455 20211116_3430_TMUAki_TMT10x_P_F3 46.953 39.149 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4201 3135 3927 23734 28548 28548 3153 1 EIVLADVIDNDSWR Unmodified 1643.8155 0.81550028 767 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 0 0 By MS/MS By MS/MS 2.1 0.943 3 4 2 1 5 5 78.204 78.162 2;3 1.1388E-71 27001 20211116_3429_TMUAki_TMT10x_P_F2 322.67 280.08 62167000 104190000 66287 98856000 76001000 83823000 80213000 41865000 40923000 51082000 68568000 57877000 97201000 4518900 101000000 72926000 85377000 79927000 44959000 44333000 49509000 65290000 10 10 2 10 10 10 10 10 10 10 10 33082000 53777000 51276 49009000 36479000 54162000 43066000 22750000 21773000 27279000 35107000 30799000 50161000 2400700 50411000 35118000 54153000 42680000 24851000 23555000 26456000 33454000 6 6 1 6 6 6 6 6 6 6 6 29085000 50414000 15011 49847000 39522000 29660000 37147000 19115000 19150000 23802000 33461000 27078000 47039000 2118100 50590000 37808000 31224000 37247000 20108000 20778000 23054000 31836000 4 4 1 4 4 4 4 4 4 4 4 12464000000 8234300000 4229200000 4202 767 3928 23735;23736;23737;23738;23739;23740;23741;23742;23743;23744 28549;28550;28551;28552;28553;28554;28555;28556;28557;28558 28552 10 EIVPVLVSTR Unmodified 1111.6601 0.66010926 2706 Q9BWD1;Q9BWD1-2 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes no 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 2 3 56.635 56.698 2 9.5628E-11 16182 20211116_3434_TMUAki_TMT10x_P_F6 200.6 151.84 18078000 29862000 296230 33013000 22823000 23676000 17792000 21398000 20330000 21103000 24297000 16834000 27876000 1825600 33317000 21774000 24644000 18389000 21862000 20712000 20622000 23316000 3 3 2 3 3 3 3 3 3 3 3 5977900 10341000 0 11236000 11077000 12858000 7264500 7358400 6898100 7601700 8504900 5565900 9652900 551360 11424000 10524000 12875000 7556700 7766300 7090700 7414200 8154600 1 1 0 1 1 1 1 1 1 1 1 12100000 19520000 296230 21777000 11746000 10818000 10528000 14039000 13432000 13501000 15792000 11268000 18223000 1274300 21893000 11250000 11769000 10832000 14096000 13621000 13208000 15161000 2 2 2 2 2 2 2 2 2 2 2 1978300000 590370000 1387900000 4203 2706 3929 23745;23746;23747;23748;23749 28559;28560;28561;28562 28560 4 EIVPVLVSTRK Unmodified 1239.7551 0.75507227 2706 Q9BWD1;Q9BWD1-2 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes no 0 0 0 1 By MS/MS By MS/MS 3.67 3.09 1 1 1 2 1 49.993 49.979 3 2.6024E-12 13967 20211116_3428_TMUAki_TMT10x_P_F1 142.47 115.96 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4204 2706 3930 23750;23751;23752 28563;28564;28565 28563 3 EIVRDIK Unmodified 871.51272 0.51271674 1276;1406;1414;595 P60709;Q6S8J3;A5A3E0;P0CG38;P63261;P68133;P68032;P62736;P63267;P63267-2;P0CG39 ACTB;POTEE;POTEF;POTEI;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2;POTEJ Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle;POTE ankyrin domain family member J no no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.231 35.286 3 0.010196 7495 20211116_3444_TMUAki_TMT10x_S_F5 88.819 34.043 3437000 5320500 3763.5 4849000 5095400 5342300 3439800 3913100 4173200 3087700 4360200 3200100 4962800 289750 4987500 4842900 5379800 3598500 4026000 4220100 3049600 4200400 3 3 1 3 3 3 3 3 3 3 3 2775600 4271500 3763.5 3899200 3608500 4790500 2772400 3098100 3356400 2483100 3489000 2584200 3984300 228200 4017500 3438100 4787200 2874000 3217000 3393800 2450400 3361600 2 2 1 2 2 2 2 2 2 2 2 661450 1049000 0 949840 1486900 551760 667450 814940 816800 604650 871200 615830 978500 61552 970050 1404800 592570 724500 809000 826350 599200 838730 1 1 0 1 1 1 1 1 1 1 1 143430000 106420000 37012000 4205 1276;1406;1414;595 3931 23753;23754;23755 28566;28567;28568 28568 3 EIVTNFLAGFEA Unmodified 1309.6554 0.65541781 805 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4.47 2.36 2 2 2 2 1 2 2 2 7 8 82.549 82.547 2 1.5809E-11 27342 20211116_3428_TMUAki_TMT10x_P_F1 127.3 104.47 22389000 33639000 41273 36447000 20732000 26243000 23653000 16396000 16580000 17621000 24129000 20844000 31399000 1278100 36831000 19927000 27143000 23620000 17204000 17445000 17159000 23042000 17 17 4 17 17 17 17 17 17 17 17 12737000 18444000 34097 20493000 10477000 17210000 11999000 8998700 9009500 9778500 13052000 11858000 17218000 672920 20712000 10073000 17551000 11999000 9587100 9439900 9518100 12466000 9 9 3 9 9 9 9 9 9 9 9 9652600 15194000 7176 15955000 10254000 9032300 11654000 7397000 7570400 7842700 11077000 8985900 14181000 605180 16119000 9854300 9591700 11622000 7616600 8004700 7641300 10577000 8 8 1 8 8 8 8 8 8 8 8 14033000000 6378800000 7654400000 4206 805 3932 23756;23757;23758;23759;23760;23761;23762;23763;23764;23765;23766;23767;23768;23769;23770 28569;28570;28571;28572;28573;28574;28575;28576;28577;28578;28579;28580;28581;28582;28583;28584;28585;28586;28587 28569 19 EIVVIHQDPEALK Unmodified 1489.814 0.81404372 1002 P41252 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 49.612 49.577 3 2.2376E-18 13373 20211116_3444_TMUAki_TMT10x_S_F5 147.18 115.95 17636000 27992000 144490 33918000 26733000 25856000 18699000 20029000 20379000 19449000 24157000 16421000 26142000 1694100 34063000 25438000 26707000 19439000 20641000 20793000 19019000 23186000 7 7 5 7 7 7 7 7 7 7 7 8787400 13260000 83236 15709000 18672000 18706000 10454000 9755200 9934400 9384500 11852000 8182500 12382000 944550 15898000 17702000 18670000 11017000 10359000 10197000 9180700 11374000 3 3 3 3 3 3 3 3 3 3 3 8848300 14732000 61249 18208000 8061000 7150000 8245300 10274000 10445000 10064000 12305000 8238900 13760000 749570 18165000 7735600 8036300 8422000 10282000 10596000 9838000 11812000 4 4 2 4 4 4 4 4 4 4 4 1055600000 631760000 423870000 4207 1002 3933 23771;23772;23773;23774;23775 28588;28589;28590;28591;28592;28593;28594;28595 28595 8 EIYHFTLEK Unmodified 1178.5972 0.59717465 2659 Q9BT78;Q9BT78-2 COPS4 COP9 signalosome complex subunit 4 yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 52.345 52.538 3 0.00036025 15649 20211116_3433_TMUAki_TMT10x_P_F5 85.533 52.155 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4208 2659 3934 23776;23777 28596;28597 28596 2 EIYTHFTCATDTK Unmodified 1585.7083 0.70825802 563;1394 P08754;P04899;P04899-4;P04899-6;P04899-3;P04899-5;P04899-2;P63096;P63096-2 GNAI3;GNAI2;GNAI1 Guanine nucleotide-binding protein G(k) subunit alpha;Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(i) subunit alpha-1 no no 0 0 0 0 By MS/MS By MS/MS 5.67 0.943 2 1 2 1 43.478 44.026 3 1.0188E-12 12285 20211116_3433_TMUAki_TMT10x_P_F5 132.79 115.05 674770 1130100 0 1405200 649770 608450 566420 832820 837050 834550 897310 628240 1055500 51245 1402200 620650 674040 587280 835490 841850 815000 863740 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 674770 1130100 0 1405200 649770 608450 566420 832820 837050 834550 897310 628240 1055500 51245 1402200 620650 674040 587280 835490 841850 815000 863740 1 1 0 1 1 1 1 1 1 1 1 47535000 0 47535000 4209 563;1394 3935 23778;23779;23780 28598;28599;28600 28599 3 EKAEGDVAALNRR Unmodified 1427.7481 0.74808942 1413 P67936 TPM4 Tropomyosin alpha-4 chain yes yes 0 0 0 2 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 31.01 30.916 4 2.1925E-14 6750 20211116_3431_TMUAki_TMT10x_P_F4 164.53 141.89 + 767590 1313500 6442.7 1219300 1262600 1157400 916680 698870 834560 714690 1018400 714730 1225200 74219 1249600 1202200 1172600 945380 734180 859140 697350 976720 2 2 1 2 2 2 2 2 2 2 2 432380 747510 0 680640 915350 854610 547150 384710 477180 410620 588040 402570 697260 40254 701690 868270 849330 572090 415630 492440 399970 563830 1 1 0 1 1 1 1 1 1 1 1 335210 565950 6442.7 538670 347270 302770 369530 314160 357380 304070 430350 312160 527990 33965 547930 333930 323250 373290 318540 366690 297380 412890 1 1 1 1 1 1 1 1 1 1 1 57372000 42864000 14507000 4210 1413 3936 23781;23782;23783 28601;28602 28601 2 EKAPSIIFIDELDAIGTK Unmodified 1959.0565 0.056458831 711 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 0 1 By MS/MS By MS/MS 4.17 1.46 1 1 2 2 4 2 78.519 78.489 3 1.0189E-08 26097 20211116_3431_TMUAki_TMT10x_P_F4 118.52 107.89 18309000 33282000 191640 26120000 24304000 33201000 25240000 21942000 22110000 24182000 25433000 17048000 31029000 1715600 27258000 23335000 33133000 25456000 22944000 22748000 23525000 24431000 4 4 2 4 4 4 4 4 4 4 4 8980800 16689000 191640 12768000 9751000 20371000 12569000 11355000 10927000 12192000 12477000 8363400 15558000 933960 13416000 9432100 20081000 12551000 12025000 11243000 11873000 11988000 2 2 2 2 2 2 2 2 2 2 2 9327800 16592000 0 13352000 14553000 12830000 12671000 10587000 11183000 11990000 12956000 8684600 15470000 781660 13843000 13903000 13053000 12905000 10919000 11505000 11652000 12444000 2 2 0 2 2 2 2 2 2 2 2 6093000000 3561600000 2531400000 4211 711 3937 23784;23785;23786;23787;23788;23789 28603;28604;28605;28606;28607 28604 5 EKDEMVEQEFNR Oxidation (M) 1568.6777 0.67768617 265 O60341;O60341-2 KDM1A Lysine-specific histone demethylase 1A yes no 0 0 1 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 35.941 35.852 3 0.014738 9759 20211116_3429_TMUAki_TMT10x_P_F2 58.831 47.038 610780 869000 0 1382800 1858000 1159900 769010 779470 944270 572600 1031700 568600 812790 56567 1371100 1753400 1186800 842410 805520 956070 567750 992550 2 2 0 2 2 2 2 2 2 2 2 398390 536510 0 865960 1691400 1017900 608410 484920 576370 367190 650180 370850 501850 39968 862430 1593800 1015600 672770 516410 590380 363470 624920 1 1 0 1 1 1 1 1 1 1 1 212390 332490 0 516860 166660 142020 160610 294550 367900 205410 381540 197750 310940 16600 508650 159630 171230 169640 289110 365680 204280 367630 1 1 0 1 1 1 1 1 1 1 1 547380000 530080000 17302000 4212 265 3938 23790;23791;23792 28608;28609 28608 210 2 EKDIQEESTFSSR Unmodified 1554.7162 0.71618016 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 35.128 34.888 3 4.8057E-19 10975 20211116_3441_TMUAki_TMT10x_S_F3 182.37 162.63 891170 1611500 0 1444300 1033500 896270 933440 1347900 1193600 988270 1562000 829560 1503100 49929 1477000 986770 957010 960120 1336900 1216000 980010 1495400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 891170 1611500 0 1444300 1033500 896270 933440 1347900 1193600 988270 1562000 829560 1503100 49929 1477000 986770 957010 960120 1336900 1216000 980010 1495400 1 1 0 1 1 1 1 1 1 1 1 62302000 0 62302000 4213 1018 3939 23793;23794 28610;28611 28611 2 EKDLEDLFYK Unmodified 1298.6394 0.63943339 1611 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.707 1 2 1 2 2 65.189 65.173 3 4.5967E-05 19643 20211116_3434_TMUAki_TMT10x_P_F6 96.745 64.247 9259500 17365000 97004 13788000 15462000 19054000 11527000 21381000 20220000 19076000 17544000 8622300 16190000 944950 14397000 14733000 19138000 12167000 21553000 20095000 18726000 17007000 3 3 3 3 3 3 3 3 3 3 3 3151000 5636100 17369 4577700 7431900 10899000 5558300 7082100 6907700 6335500 5822000 2934100 5255200 337390 4839300 7080000 10628000 5777800 7370900 6929900 6218300 5649900 1 1 1 1 1 1 1 1 1 1 1 6108500 11729000 79635 9209900 8030000 8154100 5968500 14299000 13312000 12741000 11722000 5688200 10935000 607570 9557700 7652600 8510100 6389300 14182000 13165000 12508000 11357000 2 2 2 2 2 2 2 2 2 2 2 1135600000 596660000 538990000 4214 1611 3940 23795;23796;23797;23798 28612;28613;28614;28615;28616 28613 5 EKDRDPEAQFEMPYVVR Oxidation (M) 2123.9946 0.99460363 128 O14744;O14744-5;O14744-2;O14744-3;O14744-4 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed yes no 0 0 1 2 By MS/MS By MS/MS 3 0.894 2 1 2 2 3 41.754 41.702 4 2.7098E-15 13724 20211116_3441_TMUAki_TMT10x_S_F3 144.41 129.32 12907000 22779000 203360 20711000 26366000 37502000 19784000 37187000 34896000 28906000 24428000 12019000 21248000 1373000 21526000 25123000 37162000 20880000 37577000 34468000 28572000 23889000 12 12 10 12 12 12 12 12 12 12 12 9053500 15437000 82665 13310000 22157000 32927000 16322000 25435000 24073000 19445000 16427000 8429700 14396000 936030 14022000 21099000 32166000 17101000 26060000 23880000 19238000 16083000 6 6 4 6 6 6 6 6 6 6 6 3853800 7342400 120700 7400900 4209100 4574400 3462800 11752000 10823000 9460700 8000700 3589200 6851500 436970 7503700 4024400 4995700 3779400 11518000 10588000 9334200 7805400 6 6 6 6 6 6 6 6 6 6 6 2273200000 1275200000 998020000 4215 128 3941 23799;23800;23801;23802;23803 28617;28618;28619;28620;28621;28622;28623;28624;28625;28626;28627;28628 28624 95 12 EKEEFAVPENSSVQQFK Unmodified 1994.9585 0.9585357 3183;3119 Q9UMX0;Q9UMX0-2;Q9UMX0-4;Q9UHD9 UBQLN1;UBQLN2 Ubiquilin-1;Ubiquilin-2 no no 0 0 0 1 By MS/MS By MS/MS 5 0.577 1 4 1 4 2 52.147 52.322 3;4 4.1565E-11 14394 20211116_3434_TMUAki_TMT10x_P_F6 133.86 112.62 15614000 24819000 101240 30267000 33850000 29943000 18745000 21705000 22579000 18523000 22122000 14538000 23179000 1614400 30488000 32081000 30339000 19922000 22389000 22786000 18221000 21354000 6 6 3 6 6 6 6 6 6 6 6 11099000 16901000 101240 21368000 30147000 26227000 15335000 14682000 15719000 12694000 15447000 10335000 15787000 1279600 21556000 28540000 26159000 16341000 15450000 15965000 12479000 14910000 4 4 3 4 4 4 4 4 4 4 4 4514600 7918200 0 8899000 3702700 3716100 3410000 7023600 6860200 5828500 6674000 4203300 7392200 334790 8931700 3541100 4179700 3581000 6938400 6821500 5741700 6444000 2 2 0 2 2 2 2 2 2 2 2 1393800000 975140000 418610000 4216 3183;3119 3942 23804;23805;23806;23807;23808;23809 28629;28630;28631;28632;28633;28634;28635 28633 7 EKEGIVKQDSLVINLNR Unmodified 1954.0847 0.084739268 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 0 2 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 49.874 50.119 4 2.8344E-29 13464 20211116_3434_TMUAki_TMT10x_P_F6 190.96 171.63 25511000 46176000 126830 33576000 38112000 35003000 29306000 47960000 45577000 41374000 44347000 23754000 43040000 2377500 35164000 36327000 35862000 30691000 47912000 45611000 40680000 42818000 4 4 3 4 4 4 4 4 4 4 4 3874200 5746000 58354 4551000 7161700 9566500 5213500 6396500 6493400 5581900 5254000 3607700 5357200 421630 4802200 6821500 9365100 5429700 6639100 6506000 5485100 5106700 1 1 1 1 1 1 1 1 1 1 1 21637000 40430000 68474 29025000 30950000 25437000 24093000 41564000 39083000 35793000 39093000 20146000 37683000 1955800 30362000 29506000 26497000 25261000 41273000 39105000 35195000 37711000 3 3 2 3 3 3 3 3 3 3 3 2080700000 625390000 1455300000 4217 3317 3943 23810;23811;23812 28636;28637;28638 28636 3 EKEPEYTLLTER Unmodified 1506.7566 0.75658842 445 O95793;O95793-2;O95793-3 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes no 0 0 0 1 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 45.678 45.516 3 0.00027221 14095 20211116_3430_TMUAki_TMT10x_P_F3 84.779 71.1 2616700 4050900 8508.4 5063700 5065600 5397300 3288900 2984200 2949700 2636700 3688600 2436400 3783700 259170 5099200 4812900 5423600 3418400 3145500 3041900 2589400 3535300 1 1 1 1 1 1 1 1 1 1 1 2616700 4050900 8508.4 5063700 5065600 5397300 3288900 2984200 2949700 2636700 3688600 2436400 3783700 259170 5099200 4812900 5423600 3418400 3145500 3041900 2589400 3535300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 418080000 155500000 262580000 4218 445 3944 23813;23814;23815 28639;28640 28639 2 EKEPIAASTNR Unmodified 1214.6255 0.62551466 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS 4 0 1 1 29.018 29.062 3 0.072929 6000 20211116_3431_TMUAki_TMT10x_P_F4 40.552 23.978 223700 415400 4993.4 350760 392020 430330 283550 255520 255080 225820 284850 208330 387370 25558 363580 373460 429550 292400 267730 261800 221770 273860 1 1 1 1 1 1 1 1 1 1 1 223700 415400 4993.4 350760 392020 430330 283550 255520 255080 225820 284850 208330 387370 25558 363580 373460 429550 292400 267730 261800 221770 273860 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7454800 7454800 0 4219 1663 3945 23816 28641 28641 1 EKEPIVGSTDYGKDEDSAEALLK Unmodified 2493.2122 0.21224378 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 2 By MS/MS 4.5 0.5 1 1 2 57.292 57.458 4 6.52E-16 17464 20211116_3431_TMUAki_TMT10x_P_F4 138.93 110.04 15618000 26939000 101090 23090000 27373000 49554000 24572000 28678000 27420000 25736000 23998000 14542000 25122000 1474800 24223000 26177000 48381000 25159000 30124000 27649000 25257000 23256000 4 4 2 4 4 4 4 4 4 4 4 15618000 26939000 101090 23090000 27373000 49554000 24572000 28678000 27420000 25736000 23998000 14542000 25122000 1474800 24223000 26177000 48381000 25159000 30124000 27649000 25257000 23256000 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2285400000 2285400000 0 4220 1663 3946 23817;23818 28642;28643;28644;28645 28642 4 EKEQFRK Unmodified 963.51378 0.51377937 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 2 By MS/MS 4.5 0.5 1 1 2 29.351 29.335 4 0.050434 6425 20211116_3433_TMUAki_TMT10x_P_F5 62.88 37.481 569440 964030 3135.8 534390 680630 1333900 749600 715820 768120 711430 772800 530230 897940 51690 587470 654540 1295700 757320 758860 780780 695000 745350 1 1 1 1 1 1 1 1 1 1 1 569440 964030 3135.8 534390 680630 1333900 749600 715820 768120 711430 772800 530230 897940 51690 587470 654540 1295700 757320 758860 780780 695000 745350 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 45518000 45518000 0 4221 772 3947 23819;23820 28646 28646 1 EKFEEMIQQIK Oxidation (M) 1437.7174 0.71736614 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 1 1 By MS/MS By MS/MS 5.6 1.02 1 1 2 1 4 1 50.666 50.916 3 0.011461 15741 20211116_3435_TMUAki_TMT10x_P_F7 61.233 39.982 29910000 49034000 234180 57601000 69422000 73933000 42105000 50057000 55540000 45122000 47004000 27849000 45786000 3017700 58402000 65877000 73774000 44553000 51952000 55611000 44272000 45608000 7 7 3 7 7 7 7 7 7 7 7 25033000 41081000 234180 48261000 65481000 69822000 38712000 40006000 44766000 36282000 38233000 23308000 38360000 2628700 49050000 62112000 69130000 40854000 42068000 45045000 35588000 37084000 6 6 3 6 6 6 6 6 6 6 6 4876900 7952600 0 9339800 3940700 4111300 3393600 10052000 10774000 8839900 8771600 4540900 7425800 388980 9351900 3764600 4644300 3699300 9883600 10566000 8683400 8523600 1 1 0 1 1 1 1 1 1 1 1 2956700000 2497400000 459270000 4222 1079 3948 23821;23822;23823;23824;23825 28647;28648;28649;28650;28651;28652 28651 1404 6 EKFEEMIQQIK Unmodified 1421.7225 0.72245152 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 1 By MS/MS By MS/MS 6.2 0.748 1 2 2 2 3 66.442 66.659 3 3.9697E-05 20434 20211116_3444_TMUAki_TMT10x_S_F5 97.953 70.617 75246000 119800000 712920 138500000 91296000 84387000 82863000 38600000 29129000 44794000 80491000 70066000 111860000 7040300 139160000 87364000 88277000 82829000 41742000 33807000 43493000 76057000 6 6 5 6 6 6 6 6 6 6 6 39572000 60797000 602560 70774000 56125000 60604000 50625000 20016000 14313000 23781000 41343000 36850000 56767000 4074200 71345000 53714000 61455000 50515000 22512000 17109000 23070000 39045000 3 3 3 3 3 3 3 3 3 3 3 35674000 59006000 110360 67723000 35170000 23783000 32238000 18583000 14816000 21014000 39148000 33216000 55091000 2966100 67816000 33650000 26822000 32314000 19229000 16698000 20423000 37012000 3 3 2 3 3 3 3 3 3 3 3 4692100000 2901500000 1790600000 4223 1079 3948 23826;23827;23828;23829;23830 28653;28654;28655;28656;28657;28658;28659 28656 7 EKFEGVELNTDEPPMVFK Oxidation (M) 2124.0085 0.0085223609 1220 P54578;P54578-2;P54578-3 USP14 Ubiquitin carboxyl-terminal hydrolase 14 yes no 0 0 1 1 By MS/MS 5.67 0.471 1 2 3 63.267 63.29 3;4 6.1246E-05 19325 20211116_3445_TMUAki_TMT10x_S_F6 79.97 65.66 3516100 6383100 54669 5779900 4103500 4332900 4244700 5565300 4964700 5233800 5213500 3274200 5953900 350680 5917400 3941400 4531000 4320400 5586300 5028100 5125300 5021600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3516100 6383100 54669 5779900 4103500 4332900 4244700 5565300 4964700 5233800 5213500 3274200 5953900 350680 5917400 3941400 4531000 4320400 5586300 5028100 5125300 5021600 1 1 1 1 1 1 1 1 1 1 1 1050900000 0 1050900000 4224 1220 3949 23831;23832;23833 28660;28661 28660 1638 2 EKFENLGIQPPK Unmodified 1398.7507 0.75071518 711 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 0 1 By MS/MS By matching 7 0 3 2 1 51.293 51.906 3;4 0.00239 16068 20211116_3435_TMUAki_TMT10x_P_F7 70.963 40.904 5303900 8228400 92254 9991000 12976000 13561000 7977500 8235500 8243500 6862300 7579100 4939100 7684600 633160 10121000 12322000 13475000 8361500 8601000 8351200 6758700 7331900 2 2 2 2 2 2 2 2 2 2 2 5303900 8228400 92254 9991000 12976000 13561000 7977500 8235500 8243500 6862300 7579100 4939100 7684600 633160 10121000 12322000 13475000 8361500 8601000 8351200 6758700 7331900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1235600000 1046800000 188730000 4225 711 3950 23834;23835;23836 28662;28663 28663 2 EKFEPTVFR Unmodified 1151.5975 0.597509 3349 Q9Y6E2;Q9Y6E2-2 BZW2 Basic leucine zipper and W2 domain-containing protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 44.846 44.973 3 0.0010575 11749 20211116_3445_TMUAki_TMT10x_S_F6 90.913 62.709 6268700 9972700 46005 12251000 14116000 11844000 7333000 7914700 9027400 7110700 9239300 5837100 9314100 670110 12331000 13367000 12002000 7845300 8221400 9117200 6977800 8906300 3 3 2 3 3 3 3 3 3 3 3 4080900 6344800 46005 7976900 12530000 10154000 5735500 5000300 5845900 4640800 5844600 3800100 5926500 499550 8055100 11847000 10094000 6176500 5333300 5942400 4547300 5638100 2 2 2 2 2 2 2 2 2 2 2 2187800 3627900 0 4273900 1585200 1690000 1597500 2914500 3181400 2469900 3394700 2037100 3387700 170560 4275800 1520100 1908600 1668800 2888100 3174800 2430500 3268100 1 1 0 1 1 1 1 1 1 1 1 525000000 320030000 204960000 4226 3349 3951 23837;23838;23839;23840 28664;28665;28666 28666 3 EKFQIPPNAELKYELHLK Unmodified 2196.1943 0.19428972 1497 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 0 0 0 2 By MS/MS 1 0 1 1 59.479 59.479 5 1.8141E-08 17925 20211116_3428_TMUAki_TMT10x_P_F1 117.04 94.169 5925500 10862000 110490 8366500 8844700 14936000 8976500 8757000 8581200 8599400 8461000 5518000 10126000 635120 8809700 8490800 14672000 9086200 9210600 8742900 8405100 8165800 2 2 2 2 2 2 2 2 2 2 2 5925500 10862000 110490 8366500 8844700 14936000 8976500 8757000 8581200 8599400 8461000 5518000 10126000 635120 8809700 8490800 14672000 9086200 9210600 8742900 8405100 8165800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 803580000 803580000 0 4227 1497 3952 23841 28667;28668 28668 2 EKIDLENTLEQEQEALVNR Unmodified 2270.139 0.13901926 1840 Q16204 CCDC6 Coiled-coil domain-containing protein 6 yes yes 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 69.396 69.396 3 2.2292E-08 21961 20211116_3428_TMUAki_TMT10x_P_F1 109.66 92.976 2705400 4392400 112740 4248000 2348400 5555500 3241000 3174600 3619700 3592000 3183900 2519800 4098100 324370 4363400 2281000 5525400 3252500 3360400 3650400 3491000 3084900 1 1 1 1 1 1 1 1 1 1 1 2705400 4392400 112740 4248000 2348400 5555500 3241000 3174600 3619700 3592000 3183900 2519800 4098100 324370 4363400 2281000 5525400 3252500 3360400 3650400 3491000 3084900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1012400000 1012400000 0 4228 1840 3953 23842;23843 28669;28670 28669 2 EKIDQLQEELLHTQLK Unmodified 1964.0579 0.057855815 264 O60313;O60313-2;O60313-13;O60313-9;O60313-11;O60313-10 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 0 0 0 1 By MS/MS 6 0 1 1 67.737 67.711 4 0.00042594 20711 20211116_3434_TMUAki_TMT10x_P_F6 76.151 62.11 3363900 5352600 0 5851800 4239800 6094100 3877800 3381000 3279600 3301400 4215400 3132100 4996400 289140 5938100 4056100 6132300 3933900 3572100 3395800 3227600 4037500 1 1 0 1 1 1 1 1 1 1 1 3363900 5352600 0 5851800 4239800 6094100 3877800 3381000 3279600 3301400 4215400 3132100 4996400 289140 5938100 4056100 6132300 3933900 3572100 3395800 3227600 4037500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 280700000 280700000 0 4229 264 3954 23844 28671 28671 1 EKIEGCHICTSVTPGEPQVFLGK Unmodified 2585.2618 0.26179371 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4;Q7Z4S6-6 KIF21A Kinesin-like protein KIF21A yes no 0 0 0 1 By MS/MS By MS/MS 6.67 0.943 2 1 1 2 54.908 54.944 4 1.4932E-27 15616 20211116_3447_TMUAki_TMT10x_S_F8 162.49 136.82 15686000 27665000 228580 29526000 17313000 18508000 15706000 12332000 12647000 13399000 18563000 14607000 25821000 1529200 29825000 16573000 19396000 15920000 12882000 13210000 13042000 17724000 6 6 5 6 6 6 6 6 6 6 6 5833000 9665500 86920 10423000 7226500 10437000 7236000 4534700 4628700 4795700 6707200 5431700 9021800 584120 10580000 6934600 10499000 7258600 4916300 4896700 4672900 6405800 2 2 2 2 2 2 2 2 2 2 2 9853400 17999000 141660 19103000 10086000 8071200 8469600 7796800 8018600 8602900 11856000 9175500 16799000 945080 19245000 9638700 8896700 8661600 7965200 8313400 8368800 11318000 4 4 3 4 4 4 4 4 4 4 4 2555200000 1272300000 1282900000 4230 2082 3955 23845;23846;23847 28672;28673;28674;28675;28676;28677 28677 6 EKLCYVALDFEQEMATAASSSSLEK Oxidation (M) 2822.299 0.29902666 1276;1406 P60709;Q6S8J3;P63261 ACTB;POTEE;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 1 1 By MS/MS By MS/MS 5.25 0.829 1 1 2 2 2 73.57 73.553 4 2.0928E-29 23137 20211116_3444_TMUAki_TMT10x_S_F5 165.85 153.41 13553000 24593000 110450 18610000 17285000 39118000 19742000 41029000 34806000 32803000 25080000 12619000 22926000 1210000 19715000 16638000 38629000 20363000 41373000 34404000 32376000 24495000 5 5 4 5 5 5 5 5 5 5 5 9307300 16751000 95917 11807000 10696000 30254000 13895000 27014000 23302000 21939000 16459000 8666700 15612000 880480 12670000 10342000 29610000 14219000 27478000 23052000 21636000 16090000 3 3 3 3 3 3 3 3 3 3 3 4245500 7842400 14537 6803500 6588900 8864700 5846300 14015000 11503000 10864000 8620700 3952500 7313900 329510 7044900 6295500 9019300 6144100 13896000 11353000 10741000 8405300 2 2 1 2 2 2 2 2 2 2 2 5638800000 2617800000 3021000000 4231 1276;1406 3956 23848;23849;23850;23851 28678;28679;28680;28681;28682 28681 1722 5 EKLEATINELV Unmodified 1257.6816 0.68163256 607 P10599;P10599-2 TXN Thioredoxin yes no 0 0 0 1 By MS/MS By MS/MS 3.5 1.71 4 4 4 4 4 4 12 12 74.036 73.959 2;3 1.5989E-06 23990 20211116_3440_TMUAki_TMT10x_S_F2 124.1 93.772 121410000 197910000 526020 196590000 145960000 164510000 145830000 113850000 109980000 118050000 142970000 113040000 184670000 9686500 200170000 139900000 168430000 146820000 118440000 114620000 115120000 136900000 28 28 12 28 28 28 28 28 28 28 28 53308000 84767000 221950 83978000 56022000 92890000 62402000 49470000 48121000 51232000 59956000 49632000 79094000 4129100 85860000 53855000 93104000 62521000 52542000 49999000 49964000 57471000 13 13 6 13 13 13 13 13 13 13 13 68101000 113150000 304080 112610000 89940000 71619000 83432000 64383000 61859000 66816000 83017000 63405000 105580000 5557400 114310000 86049000 75327000 84302000 65899000 64625000 65155000 79428000 15 15 6 15 15 15 15 15 15 15 15 62696000000 31908000000 30788000000 4232 607 3957 23852;23853;23854;23855;23856;23857;23858;23859;23860;23861;23862;23863;23864;23865;23866;23867;23868;23869;23870;23871;23872;23873;23874;23875 28683;28684;28685;28686;28687;28688;28689;28690;28691;28692;28693;28694;28695;28696;28697;28698;28699;28700;28701;28702;28703;28704;28705;28706;28707;28708;28709;28710 28700 28 EKLEMEMEAAR 2 Oxidation (M) 1367.6061 0.60610113 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 2 1 By MS/MS By MS/MS 2 1 3 3 1 1 4 4 30.939 30.921 3 0.0055193 7859 20211116_3429_TMUAki_TMT10x_P_F2 66.538 49.595 871680 1318200 1626.7 1391100 1281100 1197700 1042000 806190 802050 760950 1100500 811580 1230300 68776 1411200 1222000 1223300 1062000 838090 837040 745050 1052400 7 7 2 7 7 7 7 7 7 7 7 377730 574080 1316.4 632360 809880 692430 470000 334340 324290 281530 458280 351670 535900 33393 641900 767750 693650 490010 356430 341040 277130 437940 2 2 1 2 2 2 2 2 2 2 2 493950 744160 310.32 758780 471250 505320 571950 471850 477760 479420 642200 459900 694440 35383 769260 454260 529660 571970 481660 496000 467920 614420 5 5 1 5 5 5 5 5 5 5 5 173150000 63004000 110150000 4233 1779 3958 23876;23877;23878;23879;23880;23881;23882;23883 28711;28712;28713;28714 28712 2382;2383 4 EKLEMEMEAAR Oxidation (M) 1351.6112 0.61118651 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 1 1 By MS/MS By MS/MS 2.82 0.936 1 3 4 3 5 6 37.576 37.518 3 4.506E-05 10892 20211116_3441_TMUAki_TMT10x_S_F3 96.82 76.59 10790000 15582000 69249 18954000 17577000 13270000 12476000 6297100 5680500 6255400 11978000 10046000 14552000 976840 19013000 16725000 13712000 12712000 6753100 6299800 6111000 11360000 11 11 6 11 11 11 11 11 11 11 11 7700000 10875000 41636 13373000 15048000 11192000 9673500 3974900 3463400 4108800 8244600 7169100 10157000 706840 13433000 14292000 11374000 9901000 4409600 3964800 4007300 7805200 6 6 3 6 6 6 6 6 6 6 6 3090000 4706400 27613 5581800 2529100 2078100 2803000 2322200 2217100 2146600 3733700 2877200 4394900 269990 5580100 2433400 2338600 2810700 2343400 2335000 2103700 3554800 5 5 3 5 5 5 5 5 5 5 5 909830000 710950000 198890000 4234 1779 3958 23884;23885;23886;23887;23888;23889;23890;23891;23892;23893;23894 28715;28716;28717;28718;28719;28720;28721;28722;28723;28724;28725;28726;28727;28728 28724 2382;2383 14 EKLEMEMEAAR Unmodified 1335.6163 0.61627189 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 1 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 43.649 43.592 3 4.6666E-09 14489 20211116_3441_TMUAki_TMT10x_S_F3 158.11 126.82 30072000 42978000 284460 52929000 37197000 25474000 32354000 9156900 7336900 10344000 28817000 28001000 40141000 2783000 52883000 35557000 27278000 32297000 10169000 9320900 10053000 27133000 9 9 6 9 9 9 9 9 9 9 9 18467000 25442000 276310 31660000 28406000 19492000 21199000 5566900 4590900 6252400 17352000 17196000 23763000 1878600 31677000 27070000 20294000 21366000 6383300 5850000 6078200 16344000 5 5 4 5 5 5 5 5 5 5 5 11605000 17537000 8155.9 21269000 8791000 5982300 11155000 3590000 2746000 4091300 11464000 10805000 16377000 904390 21206000 8487400 6983500 10931000 3785800 3470900 3975200 10789000 4 4 2 4 4 4 4 4 4 4 4 2517400000 1537400000 979990000 4235 1779 3958 23895;23896;23897;23898;23899;23900;23901;23902 28729;28730;28731;28732;28733;28734;28735;28736;28737 28736 9 EKLEQAAIVK Unmodified 1127.655 0.65502388 1635 Q13451 FKBP5 Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 42.146 42.23 3 0.02526 10329 20211116_3434_TMUAki_TMT10x_P_F6 61.11 30.498 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4236 1635 3959 23903;23904 28738;28739 28738 2 EKLIAPVAEEEATVPNNK Unmodified 1951.0262 0.026221336 531 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 1 By MS/MS 4.67 1.25 1 1 1 3 51.688 51.562 3 4.7254E-08 15195 20211116_3433_TMUAki_TMT10x_P_F5 105.77 94.334 3253700 5213300 23970 5988800 6153600 10001000 4590400 6851300 7267300 5548500 4664700 3029700 4867500 330590 6114800 5862400 9870000 4820800 7085900 7183700 5472700 4580400 3 3 2 3 3 3 3 3 3 3 3 3253700 5213300 23970 5988800 6153600 10001000 4590400 6851300 7267300 5548500 4664700 3029700 4867500 330590 6114800 5862400 9870000 4820800 7085900 7183700 5472700 4580400 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 338580000 338580000 0 4237 531 3960 23905;23906;23907 28740;28741;28742;28743;28744 28743 5 EKLPGELEPVQATQNK Unmodified 1779.9367 0.93667805 359 O75821 EIF3G Eukaryotic translation initiation factor 3 subunit G yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.756 2 3 2 4 3 46.44 46.589 3;4 2.8277E-21 12074 20211116_3434_TMUAki_TMT10x_P_F6 169.64 152.96 17745000 28264000 200500 40911000 46411000 41102000 22681000 35426000 41441000 26294000 32833000 16524000 26421000 2014200 40846000 43914000 41733000 24828000 36032000 41033000 26057000 31940000 10 10 6 10 10 10 10 10 10 10 10 11024000 16920000 102590 24249000 42386000 36594000 19613000 20337000 23305000 14754000 19009000 10265000 15815000 1405600 24405000 40073000 36153000 21199000 21330000 23394000 14639000 18470000 6 6 3 6 6 6 6 6 6 6 6 6721600 11345000 97913 16662000 4025000 4507900 3068600 15089000 18136000 11541000 13824000 6259200 10606000 608560 16441000 3841100 5579900 3629100 14702000 17638000 11417000 13469000 4 4 3 4 4 4 4 4 4 4 4 2658300000 1543300000 1115000000 4238 359 3961 23908;23909;23910;23911;23912;23913;23914 28745;28746;28747;28748;28749;28750;28751;28752;28753;28754 28749 10 EKLQEEMLQREEAENTLQSFR Oxidation (M) 2623.2548 0.25479408 561 P08670 VIM Vimentin yes yes 0 0 1 2 By MS/MS By MS/MS 2.67 1.11 1 2 1 2 3 3 50.984 50.9 4 2.8899E-14 15206 20211116_3442_TMUAki_TMT10x_S_F4 135.98 127.88 10249000 19130000 30770 15843000 13241000 20622000 12901000 17536000 19715000 17358000 16251000 9543400 17838000 907140 16466000 12688000 20644000 13315000 17980000 19635000 16960000 15784000 5 5 3 5 5 5 5 5 5 5 5 3726600 7124200 6626.3 5337300 5365000 10844000 5642200 6317000 7289200 6205300 6060000 3469900 6641000 332120 5653500 5151200 10605000 5759600 6647800 7299900 6065000 5883900 2 2 1 2 2 2 2 2 2 2 2 6522800 12005000 24143 10505000 7875500 9778600 7258900 11219000 12426000 11153000 10191000 6073500 11197000 575020 10812000 7536900 10039000 7555200 11332000 12336000 10895000 9900300 3 3 2 3 3 3 3 3 3 3 3 3096800000 1564400000 1532400000 4239 561 3962 23915;23916;23917;23918;23919;23920 28755;28756;28757;28758;28759 28759 524 5 EKLTELMFEHYNIPAFFLCK Oxidation (M) 2545.2385 0.23853907 459 O96019;O96019-2 ACTL6A Actin-like protein 6A yes no 0 0 1 1 By MS/MS 2 0 1 1 77.702 77.652 4 0.0047027 26811 20211116_3429_TMUAki_TMT10x_P_F2 56.529 35.131 5332100 8106300 0 6501000 5270500 11383000 7323400 6869900 5349600 7006900 5894900 4963900 7558000 343650 6818500 5098800 11194000 7260000 7216700 5548000 6837700 5669700 1 1 0 1 1 1 1 1 1 1 1 5332100 8106300 0 6501000 5270500 11383000 7323400 6869900 5349600 7006900 5894900 4963900 7558000 343650 6818500 5098800 11194000 7260000 7216700 5548000 6837700 5669700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 911300000 911300000 0 4240 459 3963 23921 28760 28760 338 1 EKPGSEVLTLLLK Unmodified 1425.8443 0.84428121 1945 Q5UIP0;Q5UIP0-2 RIF1 Telomere-associated protein RIF1 yes no 0 0 0 1 By MS/MS 8 0 1 1 75.081 75.095 3 3.6725E-06 24399 20211116_3436_TMUAki_TMT10x_P_F8 109.07 64.061 4335700 6664600 172530 6852000 4348000 7660600 4782100 3931800 4014000 4452100 5045200 4038200 6219500 520420 6989000 4190400 7670500 4804200 4201300 4153800 4326700 4835000 1 1 1 1 1 1 1 1 1 1 1 4335700 6664600 172530 6852000 4348000 7660600 4782100 3931800 4014000 4452100 5045200 4038200 6219500 520420 6989000 4190400 7670500 4804200 4201300 4153800 4326700 4835000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 417920000 417920000 0 4241 1945 3964 23922 28761 28761 1 EKPNCLDLR Unmodified 1143.5706 0.57064232 89 O00451;O00451-3;O00451-2 GFRA2 GDNF family receptor alpha-2 yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.415 35.47 3 0.029519 7613 20211116_3444_TMUAki_TMT10x_S_F5 54.584 36.719 1728900 2893300 20463 2770300 3831100 3547800 2232400 2704500 2795400 2155200 2658800 1609900 2699300 191850 2846500 3634400 3547400 2365400 2775800 2814300 2127500 2569100 2 2 2 2 2 2 2 2 2 2 2 1152600 1900300 13620 1781000 3197100 3019600 1614000 1876800 1971100 1469300 1762200 1073300 1772700 136880 1843900 3026500 2974000 1731000 1953600 1982200 1451800 1706400 1 1 1 1 1 1 1 1 1 1 1 576350 993010 6842.9 989290 634000 528250 618400 827710 824260 685850 896650 536690 926570 54968 1002600 607930 573310 634460 822200 832100 675680 862720 1 1 1 1 1 1 1 1 1 1 1 140740000 114990000 25756000 4242 89 3965 23923;23924;23925 28762;28763 28763 2 EKPPITVVGDVGGR Unmodified 1422.7831 0.78307794 1714;259 O60256;O60256-4;O60256-2;O60256-3;Q14558;Q14558-2 PRPSAP2;PRPSAP1 Phosphoribosyl pyrophosphate synthase-associated protein 2;Phosphoribosyl pyrophosphate synthase-associated protein 1 no no 0 0 0 1 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 43.621 43.824 3 1.2469E-14 11225 20211116_3445_TMUAki_TMT10x_S_F6 158.17 127.1 16462000 25542000 166260 31848000 34131000 30613000 19049000 24363000 26584000 20976000 25386000 15329000 23857000 1736900 32026000 32355000 31123000 20344000 24985000 26673000 20625000 24526000 8 8 6 8 8 8 8 8 8 8 8 9115900 13775000 117060 17588000 27624000 24537000 12876000 13498000 14609000 11493000 14222000 8488500 12868000 1105300 17777000 26122000 24320000 13886000 14221000 14773000 11307000 13731000 4 4 3 4 4 4 4 4 4 4 4 7346000 11768000 49199 14260000 6506600 6076400 6173000 10865000 11975000 9482600 11164000 6840100 10990000 631610 14249000 6232700 6802700 6458600 10764000 11900000 9318100 10795000 4 4 3 4 4 4 4 4 4 4 4 2137200000 1204600000 932550000 4243 259;1714 3966 23926;23927;23928;23929;23930 28764;28765;28766;28767;28768;28769;28770;28771 28770 8 EKPQANVPSALPSLPAGSGLK Unmodified 2060.1266 0.12660408 3100 Q9UEE9 CFDP1 Craniofacial development protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 3 2 1 57.397 57.297 3;4 4.4403E-20 19056 20211116_3439_TMUAki_TMT10x_S_F1 159.04 141.34 14044000 23944000 299260 26866000 21021000 27056000 16292000 15640000 16696000 16643000 19304000 13077000 22353000 1435700 27205000 20048000 27294000 16786000 16508000 17060000 16213000 18541000 5 5 3 5 5 5 5 5 5 5 5 11103000 18224000 138110 21050000 18471000 24314000 14158000 11639000 13256000 13278000 15072000 10338000 17015000 1047200 21323000 17604000 24283000 14559000 12522000 13589000 12901000 14483000 4 4 2 4 4 4 4 4 4 4 4 2940300 5720200 161150 5816700 2549900 2741900 2134400 4000900 3440400 3364400 4232100 2738900 5337900 388480 5881200 2444200 3011200 2227100 3985200 3471000 3312100 4058100 1 1 1 1 1 1 1 1 1 1 1 2541500000 1962800000 578660000 4244 3100 3967 23931;23932;23933 28772;28773;28774;28775;28776 28776 5 EKPQANVPSALPSLPAGSGLKR Unmodified 2216.2277 0.22771511 3100 Q9UEE9 CFDP1 Craniofacial development protein 1 yes yes 0 0 0 2 By MS/MS By matching 2 0 2 1 1 50.101 49.904 4 0.091398 15611 20211116_3429_TMUAki_TMT10x_P_F2 36.627 20.32 1312500 2069100 7918.8 1780800 2187800 3157800 2093600 2069500 1766900 1766800 1852200 1222100 1929600 128450 1857600 2095900 3107600 2118400 2150000 1814800 1738100 1784100 1 1 1 1 1 1 1 1 1 1 1 1312500 2069100 7918.8 1780800 2187800 3157800 2093600 2069500 1766900 1766800 1852200 1222100 1929600 128450 1857600 2095900 3107600 2118400 2150000 1814800 1738100 1784100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 734790000 492660000 242130000 4245 3100 3968 23934;23935 28777 28777 1 EKPSEDMESNTFFDPR Oxidation (M) 1943.8207 0.82072159 212 O43395;O43395-3 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes no 0 0 1 1 By MS/MS By MS/MS 3 0 2 1 1 44.413 44.262 3 4.6704E-05 13618 20211116_3430_TMUAki_TMT10x_P_F3 87.388 61.798 1807400 3204500 6292.9 3650100 2295200 2829300 1589200 3907700 4522800 3188200 3058100 1682900 2991800 150580 3680000 2182600 2957200 1739700 3897100 4420800 3143400 2995400 3 3 2 3 3 3 3 3 3 3 3 621120 1036900 5988.5 1126400 1467200 1945500 866070 1219500 1424100 1017700 933970 578370 967860 68926 1155000 1392100 1915100 927200 1270500 1407000 1002300 916140 1 1 1 1 1 1 1 1 1 1 1 1186300 2167600 304.46 2523800 827960 883830 723150 2688200 3098700 2170500 2124100 1104500 2023900 81657 2525000 790490 1042100 812540 2626600 3013800 2141100 2079200 2 2 1 2 2 2 2 2 2 2 2 369800000 258670000 111130000 4246 212 3969 23936;23937 28778;28779;28780 28778 169 3 EKPSFELSGALLEDTNTFR Unmodified 2153.0641 0.064063405 2260 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 yes yes 0 0 0 1 By MS/MS 4 0 1 1 70.645 70.476 3 6.5416E-06 23276 20211116_3442_TMUAki_TMT10x_S_F4 83.395 75.208 2557200 4582400 120970 4424900 3289000 2813000 3558100 2606700 2544100 2459200 3551400 2381900 4275200 335000 4501100 3167700 2960400 3563700 2656300 2668300 2407800 3394700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2557200 4582400 120970 4424900 3289000 2813000 3558100 2606700 2544100 2459200 3551400 2381900 4275200 335000 4501100 3167700 2960400 3563700 2656300 2668300 2407800 3394700 1 1 1 1 1 1 1 1 1 1 1 762770000 0 762770000 4247 2260 3970 23938 28781 28781 1 EKPSQGIYMVYCR Oxidation (M) 1645.7592 0.75924773 2146 Q8IWS0;Q8IWS0-5;Q8IWS0-3;Q8IWS0-2;Q8IWS0-4 PHF6 PHD finger protein 6 yes no 0 0 1 1 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 39.478 39.72 3 0.00024486 11281 20211116_3435_TMUAki_TMT10x_P_F7 84.753 80.053 2242000 3791100 11820 4396400 6290200 6725100 3179800 4811800 5023100 3616900 3893700 2087600 3539700 243420 4477200 5953200 6664500 3445100 4953100 4989400 3581700 3791100 5 5 3 5 5 5 5 5 5 5 5 1739500 2935400 9454.6 3373400 5856600 6319800 2800400 3731900 3894300 2830800 2986100 1619600 2740700 200510 3454600 5538600 6198300 3034200 3898000 3881700 2801800 2908700 4 4 2 4 4 4 4 4 4 4 4 502580 855640 2365.4 1023000 433610 405370 379360 1079900 1128800 786150 907550 467970 799030 42906 1022600 414550 466220 410840 1055100 1107700 779900 882330 1 1 1 1 1 1 1 1 1 1 1 364860000 318430000 46438000 4248 2146 3971 23939;23940;23941;23942 28782;28783;28784;28785;28786 28783 2609 5 EKPSQGIYMVYCR Unmodified 1629.7643 0.76433311 2146 Q8IWS0;Q8IWS0-5;Q8IWS0-3;Q8IWS0-2;Q8IWS0-4 PHF6 PHD finger protein 6 yes no 0 0 0 1 By MS/MS 8 0 1 1 45.564 45.506 3 0.00066703 11811 20211116_3447_TMUAki_TMT10x_S_F8 73.877 50.96 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4249 2146 3971 23943 28787 28787 1 EKPSYDTETDPSEGLMNVLK Oxidation (M) 2268.0468 0.046758361 2855 Q9HB71;Q9HB71-3 CACYBP Calcyclin-binding protein yes no 0 0 1 1 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 57.076 57.182 3;4 5.33E-13 16358 20211116_3434_TMUAki_TMT10x_P_F6 134.06 117.75 9459400 15714000 69259 17216000 12391000 18114000 11110000 12894000 13435000 12462000 12726000 8807500 14669000 811500 17471000 11848000 18281000 11409000 13360000 13541000 12189000 12298000 3 3 1 3 3 3 3 3 3 3 3 7416900 12179000 0 12978000 10807000 16426000 9782200 9996300 10186000 9374300 10025000 6905200 11367000 584050 13235000 10332000 16377000 9988700 10469000 10339000 9181100 9676100 2 2 0 2 2 2 2 2 2 2 2 2042500 3535700 69259 4238300 1583400 1688000 1328200 2897800 3248700 3087700 2700400 1902300 3301900 227450 4236000 1516000 1904100 1420100 2890900 3201500 3007800 2622000 1 1 1 1 1 1 1 1 1 1 1 1564600000 1141400000 423220000 4250 2855 3972 23944;23945;23946 28788;28789;28790 28789 2982 3 EKPSYDTETDPSEGLMNVLK Unmodified 2252.0518 0.051843739 2855 Q9HB71;Q9HB71-3 CACYBP Calcyclin-binding protein yes no 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 65.362 65.317 3 9.4133E-13 20143 20211116_3445_TMUAki_TMT10x_S_F6 127.32 112.36 3370600 5500700 9746.6 6808100 2903700 1732300 2675300 1293700 1248800 1699600 3059100 3138400 5137600 281990 6777200 2779100 2067900 2681400 1349700 1397100 1643200 2894900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3370600 5500700 9746.6 6808100 2903700 1732300 2675300 1293700 1248800 1699600 3059100 3138400 5137600 281990 6777200 2779100 2067900 2681400 1349700 1397100 1643200 2894900 1 1 1 1 1 1 1 1 1 1 1 604210000 0 604210000 4251 2855 3972 23947;23948 28791;28792 28792 2 EKPSYDTETDPSEGLMNVLKK Oxidation (M) 2396.1417 0.14172138 2855 Q9HB71;Q9HB71-3 CACYBP Calcyclin-binding protein yes no 0 0 1 2 By MS/MS 7.5 0.5 1 1 2 54.268 54.687 4;5 6.5446E-10 17236 20211116_3435_TMUAki_TMT10x_P_F7 105.06 92.136 5527500 9470200 178740 9612200 10515000 15220000 7980900 10060000 10445000 8402000 8128700 5148000 8837300 694700 9879900 10029000 15043000 8304100 10439000 10436000 8274100 7913200 2 2 2 2 2 2 2 2 2 2 2 5527500 9470200 178740 9612200 10515000 15220000 7980900 10060000 10445000 8402000 8128700 5148000 8837300 694700 9879900 10029000 15043000 8304100 10439000 10436000 8274100 7913200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1440400000 1440400000 0 4252 2855 3973 23949;23950 28793;28794 28793 2982 2 EKPSYDTETDPSEGLMNVLKK Unmodified 2380.1468 0.14680676 2855 Q9HB71;Q9HB71-3 CACYBP Calcyclin-binding protein yes no 0 0 0 2 By MS/MS By MS/MS 7 0.816 1 1 1 1 2 61.56 61.784 4 1.2469E-10 18902 20211116_3436_TMUAki_TMT10x_P_F8 119.01 110.41 33798000 57669000 324610 61503000 41470000 39778000 35998000 23405000 18797000 25193000 38951000 31471000 53826000 3135500 62147000 39641000 41495000 36268000 24676000 20591000 24531000 36951000 6 6 4 6 6 6 6 6 6 6 6 15055000 23938000 58562 25809000 21826000 25319000 20867000 10941000 8660000 11460000 16362000 14018000 22343000 1321000 26190000 20902000 25501000 20838000 11865000 9617500 11171000 15546000 3 3 1 3 3 3 3 3 3 3 3 18742000 33731000 266050 35694000 19645000 14459000 15132000 12464000 10137000 13732000 22589000 17453000 31482000 1814400 35958000 18739000 15995000 15430000 12811000 10973000 13360000 21405000 3 3 3 3 3 3 3 3 3 3 3 2545200000 753230000 1791900000 4253 2855 3973 23951;23952;23953 28795;28796;28797;28798;28799;28800 28797 6 EKPTFIPYFICACK Unmodified 1772.863 0.86298452 2047 Q7KZ85;Q7KZ85-2 SUPT6H Transcription elongation factor SPT6 yes no 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 70.906 70.64 3 0.006281 24570 20211116_3430_TMUAki_TMT10x_P_F3 60.55 43.061 5365500 9156000 16848 8256500 6362300 11746000 6068500 5895400 4729700 5234600 6927000 4995900 8540100 474500 8538700 6094100 11619000 6129400 6269500 4948200 5139600 6614200 1 1 1 1 1 1 1 1 1 1 1 5365500 9156000 16848 8256500 6362300 11746000 6068500 5895400 4729700 5234600 6927000 4995900 8540100 474500 8538700 6094100 11619000 6129400 6269500 4948200 5139600 6614200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 953900000 953900000 0 4254 2047 3974 23954;23955 28801 28801 1 EKPTTALLDK Unmodified 1114.6234 0.6233894 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 1 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 43.902 44.223 3 0.00090828 11444 20211116_3445_TMUAki_TMT10x_S_F6 85.554 34.462 42086000 67922000 387260 68734000 70888000 58236000 45289000 34472000 31823000 33962000 50802000 39187000 63381000 3984100 69906000 67333000 59440000 46860000 36233000 33637000 33190000 48419000 6 6 3 6 6 6 6 6 6 6 6 24623000 37011000 61049 37843000 51252000 42393000 26575000 19056000 16895000 18102000 27372000 22926000 34538000 2328100 38616000 48517000 42383000 27947000 20524000 17983000 17718000 26081000 3 3 1 3 3 3 3 3 3 3 3 17464000 30911000 326210 30891000 19636000 15842000 18714000 15417000 14928000 15860000 23429000 16262000 28843000 1656000 31290000 18816000 17057000 18913000 15709000 15654000 15471000 22338000 3 3 2 3 3 3 3 3 3 3 3 1036000000 597340000 438610000 4255 1576 3975 23956;23957;23958;23959;23960 28802;28803;28804;28805;28806;28807;28808 28806 7 EKPVDLQNFGLR Unmodified 1414.7569 0.75686319 2379 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 53.772 54.214 3 2.4318E-06 16978 20211116_3435_TMUAki_TMT10x_P_F7 116.9 91.465 21528000 35087000 506710 42484000 42388000 47795000 27515000 27783000 28075000 24659000 29462000 20048000 32768000 2549200 42898000 40300000 47913000 28704000 29164000 28586000 24212000 28378000 3 3 3 3 3 3 3 3 3 3 3 17895000 28995000 426850 34685000 38911000 44603000 24762000 22692000 22600000 20185000 23921000 16665000 27077000 2175800 35130000 36980000 44335000 25791000 24103000 23133000 19817000 23035000 2 2 2 2 2 2 2 2 2 2 2 3633100 6091800 79864 7799600 3476100 3192000 2752100 5090500 5475000 4473700 5541200 3383400 5690700 373440 7767400 3319700 3578700 2913700 5061400 5453000 4394700 5343400 1 1 1 1 1 1 1 1 1 1 1 2297200000 868960000 1428200000 4256 2379 3976 23961;23962;23963;23964 28809;28810;28811;28812 28811 4 EKPYFPIPEEYTFIQNVPLEDR Unmodified 2723.3483 0.34828376 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 1 By MS/MS By MS/MS 6.08 1.84 1 2 4 6 5 10 15 16 43 16 65.687 65.726 2;3;4 4.8541E-35 26203 20211116_3442_TMUAki_TMT10x_S_F4 182.77 174.97 412060000 689390000 11388000 625340000 491240000 652920000 543200000 452930000 430260000 478910000 532020000 383730000 643040000 42008000 642880000 472810000 658950000 544780000 471380000 446270000 466650000 510070000 89 89 53 89 89 89 89 89 89 89 89 187250000 304970000 2721400 276400000 185880000 367350000 220060000 205960000 191550000 212580000 231110000 174360000 284460000 16481000 285350000 179170000 364990000 220550000 217750000 197520000 207340000 221720000 66 66 40 66 66 66 66 66 66 66 66 224810000 384430000 8666600 348930000 305350000 285570000 323140000 246960000 238710000 266330000 300910000 209370000 358580000 25526000 357530000 293640000 293960000 324230000 253620000 248750000 259310000 288350000 23 23 13 23 23 23 23 23 23 23 23 234560000000 119070000000 115490000000 4257 1474 3977 23965;23966;23967;23968;23969;23970;23971;23972;23973;23974;23975;23976;23977;23978;23979;23980;23981;23982;23983;23984;23985;23986;23987;23988;23989;23990;23991;23992;23993;23994;23995;23996;23997;23998;23999;24000;24001;24002;24003;24004;24005;24006;24007;24008;24009;24010;24011;24012;24013;24014;24015;24016;24017;24018;24019;24020;24021;24022;24023 28813;28814;28815;28816;28817;28818;28819;28820;28821;28822;28823;28824;28825;28826;28827;28828;28829;28830;28831;28832;28833;28834;28835;28836;28837;28838;28839;28840;28841;28842;28843;28844;28845;28846;28847;28848;28849;28850;28851;28852;28853;28854;28855;28856;28857;28858;28859;28860;28861;28862;28863;28864;28865;28866;28867;28868;28869;28870;28871;28872;28873;28874;28875;28876;28877;28878;28879;28880;28881;28882;28883;28884;28885;28886;28887;28888;28889;28890;28891;28892;28893;28894;28895;28896;28897;28898;28899;28900;28901;28902 28883 90 EKPYFPIPEEYTFIQNVPLEDRVR Unmodified 2978.5178 0.5178087 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 2 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 75.723 75.737 4 1.543E-86 24647 20211116_3436_TMUAki_TMT10x_P_F8 261.49 248.4 34288000 53338000 298130 56025000 54906000 48706000 36756000 42990000 33390000 32773000 44282000 31926000 49780000 3217700 56855000 52195000 49941000 38128000 43692000 34502000 32428000 42380000 12 12 7 12 12 12 12 12 12 12 12 18553000 28307000 178280 29181000 17514000 34249000 19726000 24282000 18240000 18093000 23529000 17276000 26417000 1634500 29784000 16856000 34354000 19847000 25006000 18809000 17926000 22534000 6 6 4 6 6 6 6 6 6 6 6 15734000 25031000 119850 26844000 37392000 14457000 17030000 18708000 15149000 14680000 20753000 14650000 23364000 1583200 27072000 35339000 15587000 18280000 18686000 15693000 14503000 19846000 6 6 3 6 6 6 6 6 6 6 6 8788100000 4021500000 4766600000 4258 1474 3978 24024;24025;24026;24027;24028;24029 28903;28904;28905;28906;28907;28908;28909;28910;28911;28912;28913;28914 28908 12 EKQPPIDNIIR Unmodified 1321.7354 0.73539946 1172 P52292 KPNA2 Importin subunit alpha-1 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 41.866 41.982 3 1.843E-10 11453 20211116_3433_TMUAki_TMT10x_P_F5 160.38 134.4 21514000 33410000 246810 38399000 48648000 43191000 25335000 36614000 39212000 28974000 34832000 20031000 31193000 2178200 38892000 46061000 43557000 27347000 37330000 39129000 28612000 33736000 8 8 5 8 8 8 8 8 8 8 8 13531000 20430000 159550 23214000 41503000 36622000 19429000 21899000 24266000 17505000 20881000 12599000 19074000 1547900 23686000 39242000 36150000 21011000 22877000 24355000 17278000 20248000 5 5 4 5 5 5 5 5 5 5 5 7982600 12979000 87257 15185000 7145200 6569100 5906200 14715000 14946000 11468000 13950000 7432400 12119000 630250 15206000 6818700 7406700 6335500 14453000 14774000 11334000 13488000 3 3 1 3 3 3 3 3 3 3 3 1629500000 1050700000 578810000 4259 1172 3979 24030;24031;24032;24033;24034;24035 28915;28916;28917;28918;28919;28920;28921;28922 28917 8 EKVAGIESHSELQISR Unmodified 1781.9272 0.92717599 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 1 By matching By MS/MS 5 0 2 1 1 37.462 37.533 4 2.1244E-10 8564 20211116_3444_TMUAki_TMT10x_S_F5 126.07 68.272 253740 474580 11103 497120 314110 266440 241230 546450 498350 453440 498610 236340 442910 32229 502100 300030 291950 256460 538670 495740 446680 480990 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 253740 474580 11103 497120 314110 266440 241230 546450 498350 453440 498610 236340 442910 32229 502100 300030 291950 256460 538670 495740 446680 480990 1 1 1 1 1 1 1 1 1 1 1 100220000 80276000 19943000 4260 1741 3980 24036;24037 28923 28923 1 EKVELAAECCR Unmodified 1363.6224 0.6224199 2373 Q92888;Q92888-4;Q92888-3;Q92888-2 ARHGEF1 Rho guanine nucleotide exchange factor 1 yes no 0 0 0 1 By MS/MS 4 0 1 1 34.465 34.489 3 0.0010713 8200 20211116_3431_TMUAki_TMT10x_P_F4 79.885 57.688 1064200 1523300 0 1559800 1993600 1900000 1252400 977070 901200 863090 1314400 990850 1421500 101200 1593700 1892900 1893800 1298200 1036600 946840 847640 1255200 1 1 0 1 1 1 1 1 1 1 1 1064200 1523300 0 1559800 1993600 1900000 1252400 977070 901200 863090 1314400 990850 1421500 101200 1593700 1892900 1893800 1298200 1036600 946840 847640 1255200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37408000 37408000 0 4261 2373 3981 24038 28924 28924 1 EKVGEVTYVELFK Unmodified 1539.8185 0.81846039 3065 Q9P2K5;Q9P2K5-2 MYEF2 Myelin expression factor 2 yes no 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 64.544 64.551 3 1.3273E-05 19508 20211116_3444_TMUAki_TMT10x_S_F5 89.466 58.239 4775400 7688900 104850 7565400 6834800 10406000 6669900 6017200 6214700 6366400 5862700 4447200 7174100 522470 7769100 6555700 10327000 6760100 6349800 6329800 6203400 5666400 1 1 1 1 1 1 1 1 1 1 1 4775400 7688900 104850 7565400 6834800 10406000 6669900 6017200 6214700 6366400 5862700 4447200 7174100 522470 7769100 6555700 10327000 6760100 6349800 6329800 6203400 5666400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 272620000 272620000 0 4262 3065 3982 24039;24040 28925;28926 28926 2 EKVGEVTYVELLMDAEGK Oxidation (M) 2024.9976 0.99762332 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 1 1 By MS/MS By MS/MS 2.44 0.831 1 4 3 1 3 6 74.171 74.016 3;4 1.0495E-08 25361 20211116_3429_TMUAki_TMT10x_P_F2 118.53 99.99 36815000 64681000 393500 55453000 41373000 68066000 48762000 52082000 61203000 57153000 53472000 34281000 60320000 3106300 57412000 39873000 68204000 49460000 53911000 61445000 55609000 51822000 14 14 8 14 14 14 14 14 14 14 14 14800000 25398000 335390 21167000 15832000 36092000 19434000 20758000 26028000 23401000 21964000 13782000 23683000 1250700 22115000 15289000 35503000 19728000 21959000 26047000 22746000 21314000 5 5 3 5 5 5 5 5 5 5 5 22015000 39283000 58116 34287000 25542000 31974000 29329000 31323000 35174000 33752000 31507000 20498000 36637000 1855600 35296000 24584000 32701000 29732000 31953000 35398000 32863000 30507000 9 9 5 9 9 9 9 9 9 9 9 5373200000 2715400000 2657800000 4263 1171 3983 24041;24042;24043;24044;24045;24046;24047;24048;24049 28927;28928;28929;28930;28931;28932;28933;28934;28935;28936;28937;28938;28939;28940 28928 1560 14 EKYEITEQR Unmodified 1194.5881 0.58806652 1499 Q02878 RPL6 60S ribosomal protein L6 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 32.662 32.514 3 0.0011251 7442 20211116_3431_TMUAki_TMT10x_P_F4 89.266 60.57 3198900 5110600 3086.4 4501300 4701100 4365300 3147400 2241600 2760900 2269600 3579900 2978100 4766500 239880 4633100 4465500 4407700 3261800 2387200 2854800 2215500 3428100 3 3 1 3 3 3 3 3 3 3 3 2694600 4349500 3086.4 3781700 4180300 3862200 2531200 1827100 2296900 1856400 2958100 2508600 4056400 202260 3899200 3964100 3883900 2646500 1961200 2370400 1811900 2833100 2 2 1 2 2 2 2 2 2 2 2 504240 761110 0 719660 520770 503050 616130 414580 464070 413190 621810 469460 710040 37614 733860 501450 523840 615270 425940 484370 403600 594960 1 1 0 1 1 1 1 1 1 1 1 329300000 259810000 69494000 4264 1499 3984 24050;24051;24052 28941;28942;28943 28942 3 EKYIDQEELNK Unmodified 1407.6882 0.6881745 553;544;1914 P07900;P07900-2;Q14568;P08238;Q58FF8 HSP90AA1;HSP90AA2P;HSP90AB1;HSP90AB2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 no no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 42.002 42.125 3 3.5144E-07 11229 20211116_3431_TMUAki_TMT10x_P_F4 137.62 94.54 11278000 19120000 166820 19461000 51893000 27738000 17758000 16938000 23302000 14450000 22267000 10502000 17842000 1626000 19953000 48907000 27504000 19969000 17692000 23426000 14215000 21513000 7 7 5 7 7 7 7 7 7 7 7 7778700 12957000 126720 13297000 47567000 24242000 13794000 11738000 16516000 10058000 15769000 7243600 12092000 1312600 13705000 44768000 23740000 15842000 12515000 16656000 9892700 15235000 4 4 3 4 4 4 4 4 4 4 4 3499000 6162800 40093 6163400 4325900 3495900 3963800 5199800 6786100 4392000 6498300 3258000 5750600 313400 6247800 4139600 3764200 4126900 5176700 6770000 4322700 6277600 3 3 2 3 3 3 3 3 3 3 3 842320000 608390000 233930000 4265 544;553;1914 3985 24053;24054;24055;24056 28944;28945;28946;28947;28948;28949;28950 28944 7 EKYPSHSFIGEESVAAGEK Unmodified 2063.98 0.97999942 849 P29218;P29218-3;P29218-2 IMPA1 Inositol monophosphatase 1 yes no 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 42.005 42.108 4 3.3904E-08 10316 20211116_3434_TMUAki_TMT10x_P_F6 106.39 89.702 1116100 1936600 12015 2134100 2237100 2667300 1473600 1647200 1753700 1587600 1538200 1039300 1807800 119430 2171200 2126600 2661500 1543400 1724500 1764200 1553000 1490600 2 2 2 2 2 2 2 2 2 2 2 835060 1449500 6069.5 1617000 2019800 2448200 1275900 1252700 1335700 1246600 1156200 777570 1353200 91482 1650200 1918300 2416000 1334900 1333800 1349900 1217700 1120900 1 1 1 1 1 1 1 1 1 1 1 281030 487040 5946 517100 217340 219070 197770 394540 418000 340990 382010 261710 454570 27949 520940 208260 245500 208440 390680 414330 335240 369620 1 1 1 1 1 1 1 1 1 1 1 331390000 247740000 83644000 4266 849 3986 24057;24058 28951;28952 28951 2 EKYQEEFEHFQQELDK Unmodified 2125.9593 0.95926398 1090 P49257 LMAN1 Protein ERGIC-53 yes yes 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 62.835 62.495 4 0.0001799 19400 20211116_3440_TMUAki_TMT10x_S_F2 80.638 66.329 8865400 15498000 147740 14263000 11042000 9660600 10287000 10340000 9259700 9387200 12080000 8255700 14457000 903170 14569000 10578000 10141000 10442000 10450000 9565100 9207300 11566000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8865400 15498000 147740 14263000 11042000 9660600 10287000 10340000 9259700 9387200 12080000 8255700 14457000 903170 14569000 10578000 10141000 10442000 10450000 9565100 9207300 11566000 2 2 2 2 2 2 2 2 2 2 2 519230000 0 519230000 4267 1090 3987 24059;24060 28953;28954 28953 2 ELAAEVEVQDGPNEDGEMFMRPGK 2 Oxidation (M) 2679.1792 0.17924587 558 P08574 CYC1 Cytochrome c1, heme protein, mitochondrial yes yes 0 0 2 1 By MS/MS 1 0 1 1 51.722 51.722 4 0.00547 14718 20211116_3428_TMUAki_TMT10x_P_F1 44.848 38.185 1896100 3310200 42977 3018000 2864000 5415800 2614700 2939500 3093000 2610600 2896200 1765700 3087700 210800 3135400 2742400 5313700 2680000 3103800 3118700 2563200 2799900 1 1 1 1 1 1 1 1 1 1 1 1896100 3310200 42977 3018000 2864000 5415800 2614700 2939500 3093000 2610600 2896200 1765700 3087700 210800 3135400 2742400 5313700 2680000 3103800 3118700 2563200 2799900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 493610000 493610000 0 4268 558 3988 24061 28955 28955 517;518 1 ELAALPK Unmodified 740.44324 0.44324019 2409 Q96AG4 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 45.985 46.139 2 0.0050568 11991 20211116_3444_TMUAki_TMT10x_S_F5 110.36 49.402 3392400 5803400 42071 5949000 3961600 3123500 3510200 5816200 5477200 4573600 5151300 3158900 5415700 328430 6016400 3789700 3416800 3645000 5740400 5474500 4518000 4979400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3392400 5803400 42071 5949000 3961600 3123500 3510200 5816200 5477200 4573600 5151300 3158900 5415700 328430 6016400 3789700 3416800 3645000 5740400 5474500 4518000 4979400 1 1 1 1 1 1 1 1 1 1 1 107580000 0 107580000 4269 2409 3989 24062;24063;24064;24065 28956;28957;28958;28959 28959 4 ELAAQLNEEAK Unmodified 1214.6143 0.61428128 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 0 0 By MS/MS 3.25 0.829 1 1 2 4 45.681 45.496 3 0.00022003 15341 20211116_3441_TMUAki_TMT10x_S_F3 86.911 64.349 4407800 7145200 25043 9533000 3219500 3517400 3889100 5934800 6886500 5041100 7231900 4104300 6676200 372140 9466600 3105400 4008700 4002700 5885300 6886900 4960200 6965700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4407800 7145200 25043 9533000 3219500 3517400 3889100 5934800 6886500 5041100 7231900 4104300 6676200 372140 9466600 3105400 4008700 4002700 5885300 6886900 4960200 6965700 2 2 2 2 2 2 2 2 2 2 2 136420000 0 136420000 4270 3317 3990 24066;24067;24068;24069 28960;28961;28962;28963 28961 4 ELAAQLNEEAKR Unmodified 1370.7154 0.7153923 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 0 1 By MS/MS By MS/MS 4.25 0.829 1 1 2 2 2 38.826 38.804 3 8.237E-12 9910 20211116_3431_TMUAki_TMT10x_P_F4 164.53 124.74 4341600 6599600 32567 6776800 9495200 9066500 5868400 7023700 7049000 5988900 6734100 4042600 6158800 451660 6935200 9014500 9049200 6178800 7213300 7108300 5891700 6505900 4 4 3 4 4 4 4 4 4 4 4 3149900 4676300 12145 4752700 7975500 7811700 4468700 5215000 5008200 4355800 4747000 2932900 4363800 329230 4888900 7559200 7711000 4732900 5407600 5062100 4289500 4587300 2 2 1 2 2 2 2 2 2 2 2 1191700 1923300 20422 2024100 1519700 1254800 1399700 1808700 2040800 1633100 1987100 1109700 1795000 122420 2046300 1455400 1338200 1445900 1805800 2046200 1602200 1918600 2 2 2 2 2 2 2 2 2 2 2 388870000 240910000 147960000 4271 3317 3991 24070;24071;24072;24073 28964;28965;28966;28967 28964 4 ELAEAMAAQHTAESECEQLVK Oxidation (M) 2360.0624 0.0624252 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 1 0 By MS/MS 1 0 2 2 53.805 53.805 3;4 1.9592E-14 15550 20211116_3428_TMUAki_TMT10x_P_F1 136.49 122.17 6414600 11481000 80269 10906000 11760000 19183000 9540500 12546000 12240000 10996000 9991000 5972500 10710000 590400 11291000 11219000 18883000 9877000 13044000 12254000 10803000 9707600 3 3 2 3 3 3 3 3 3 3 3 6414600 11481000 80269 10906000 11760000 19183000 9540500 12546000 12240000 10996000 9991000 5972500 10710000 590400 11291000 11219000 18883000 9877000 13044000 12254000 10803000 9707600 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2196900000 2196900000 0 4272 1741 3992 24074;24075 28968;28969;28970 28968 2350 3 ELAEAMAAQHTAESECEQLVK Unmodified 2344.0675 0.067510578 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 59.601 59.26 3 5.2464E-12 19367 20211116_3429_TMUAki_TMT10x_P_F2 111.57 95.804 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4273 1741 3992 24076;24077 28971;28972 28971 2 ELAEAVAGGR Unmodified 971.50361 0.50360861 3087 Q9UBT2 UBA2 SUMO-activating enzyme subunit 2 yes yes 0 0 0 0 By MS/MS By MS/MS 3.17 0.898 2 1 3 2 4 37.3 37.279 2 2.095E-08 12079 20211116_3441_TMUAki_TMT10x_S_F3 169.44 117.78 4140400 6651300 23745 7226300 7399500 7149900 5044900 5006800 5639800 4617600 6072200 3855000 6208500 371120 7330300 7034600 7240400 5258800 5187100 5726800 4525800 5844300 5 5 3 5 5 5 5 5 5 5 5 2528900 3941200 19867 4425100 5498700 5736600 3151300 3093300 3422000 2797000 3677500 2354500 3679400 234740 4499800 5212300 5703800 3327600 3269600 3478500 2743900 3539600 2 2 1 2 2 2 2 2 2 2 2 1611600 2710100 3878.4 2801200 1900800 1413300 1893600 1913500 2217800 1820600 2394700 1500500 2529100 136380 2830500 1822300 1536700 1931200 1917500 2248300 1781900 2304600 3 3 2 3 3 3 3 3 3 3 3 241060000 110840000 130220000 4274 3087 3993 24078;24079;24080;24081;24082;24083 28973;28974;28975;28976;28977 28976 5 ELAEDGYSGVEVR Unmodified 1422.6627 0.66268803 783 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 0 By MS/MS By MS/MS 2 0.784 4 5 4 7 6 44.775 44.624 2;3 4.7496E-65 13840 20211116_3439_TMUAki_TMT10x_S_F1 325.74 280.66 19036000 29580000 13081 44253000 51443000 43670000 24129000 28965000 34734000 22567000 30152000 17722000 27656000 1794600 44101000 48624000 44193000 26231000 30000000 34709000 22304000 29229000 13 13 4 13 13 13 13 13 13 13 13 11690000 18048000 3603.6 27661000 46218000 39182000 19465000 18141000 22126000 14039000 18443000 10883000 16876000 1281800 27712000 43632000 38732000 21225000 19384000 22262000 13880000 17905000 6 6 1 6 6 6 6 6 6 6 6 7346200 11532000 9477.5 16592000 5225400 4488000 4664000 10824000 12608000 8528300 11710000 6839500 10779000 512820 16389000 4991900 5461100 5006200 10617000 12447000 8423800 11324000 7 7 3 7 7 7 7 7 7 7 7 5544400000 4142500000 1401900000 4275 783 3994 24084;24085;24086;24087;24088;24089;24090;24091;24092;24093;24094;24095;24096 28978;28979;28980;28981;28982;28983;28984;28985;28986;28987;28988;28989;28990;28991;28992 28986 15 ELAEQLGLSTGEK Unmodified 1373.7038 0.70382456 359 O75821 EIF3G Eukaryotic translation initiation factor 3 subunit G yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.577 1 4 1 4 2 58.599 58.567 2;3 1.5942E-13 17901 20211116_3431_TMUAki_TMT10x_P_F4 160.38 88.929 30156000 48018000 313510 54464000 48928000 57682000 38146000 32993000 32155000 29426000 38112000 28080000 44830000 3005200 55155000 46660000 58009000 39072000 34684000 33186000 28886000 36581000 7 7 5 7 7 7 7 7 7 7 7 24467000 37520000 265320 42507000 43021000 52943000 33393000 26285000 24773000 23029000 30255000 22783000 35028000 2530700 43168000 41024000 52692000 34109000 27973000 25774000 22625000 29017000 5 5 4 5 5 5 5 5 5 5 5 5689000 10499000 48187 11957000 5907300 4738500 4753000 6707600 7382700 6397500 7856600 5297000 9801900 474480 11987000 5635100 5316800 4963000 6711100 7412300 6260900 7564300 2 2 1 2 2 2 2 2 2 2 2 2161200000 1396900000 764280000 4276 359 3995 24097;24098;24099;24100;24101;24102 28993;28994;28995;28996;28997;28998;28999;29000 28997 8 ELAEQTLNNIK Unmodified 1271.6721 0.67213051 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 By MS/MS By MS/MS 5 0 3 2 1 54.292 54.484 2;3 2.3195E-14 16459 20211116_3433_TMUAki_TMT10x_P_F5 187.16 102.94 9051200 13622000 17114 18064000 15433000 14569000 8690400 8605300 10254000 8423300 10978000 8427300 12728000 806740 18062000 14626000 14924000 9216000 9044900 10389000 8234100 10568000 3 3 1 3 3 3 3 3 3 3 3 6428000 9629600 0 12738000 13663000 12692000 7109700 5769000 7078600 5722700 7749500 5984700 8997000 585260 12775000 12933000 12777000 7553300 6213600 7226400 5591000 7454900 2 2 0 2 2 2 2 2 2 2 2 2623200 3992800 17114 5325600 1770300 1877400 1580800 2836300 3175800 2700600 3228300 2442600 3730700 221480 5287300 1693700 2146800 1662700 2831300 3162900 2643100 3112600 1 1 1 1 1 1 1 1 1 1 1 1429900000 1005000000 424870000 4277 2334 3996 24103;24104;24105 29001;29002;29003 29001 3 ELAFQISK Unmodified 934.51238 0.51238239 1665;63 O00148;O00148-2;O00148-3;Q13838;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B no no 0 0 0 0 By MS/MS By MS/MS 5.83 0.687 2 3 1 3 3 57.272 57.396 2 0.0017787 16455 20211116_3434_TMUAki_TMT10x_P_F6 107.15 47.909 27930000 44918000 124820 50017000 52565000 50386000 33342000 35982000 30115000 31818000 38271000 26007000 41933000 2735600 50671000 49923000 50983000 34726000 37187000 31067000 31247000 36666000 4 4 3 4 4 4 4 4 4 4 4 19108000 30446000 124820 33547000 43019000 43523000 25684000 25035000 21216000 21567000 26077000 17792000 28421000 2035400 34154000 40820000 43307000 26820000 26283000 21951000 21206000 25005000 3 3 3 3 3 3 3 3 3 3 3 8823000 14473000 0 16470000 9545800 6863000 7658400 10947000 8899200 10251000 12194000 8214700 13512000 700240 16517000 9102800 7675900 7905300 10903000 9116100 10041000 11661000 1 1 0 1 1 1 1 1 1 1 1 967600000 292050000 675550000 4278 63;1665 3997 24106;24107;24108;24109;24110;24111 29004;29005;29006;29007;29008;29009;29010;29011 29007 8 ELAGERR Unmodified 829.44061 0.44061443 154 O15020;O15020-2 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes no 0 0 0 1 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 31.661 31.644 3 0.073061 9649 20211116_3441_TMUAki_TMT10x_S_F3 45.718 45.718 610950 1030000 0 898340 939160 1314200 785210 750130 820530 723540 705690 568820 960640 50764 931970 896350 1300500 805610 790350 829130 707740 684310 2 2 0 2 2 2 2 2 2 2 2 610950 1030000 0 898340 939160 1314200 785210 750130 820530 723540 705690 568820 960640 50764 931970 896350 1300500 805610 790350 829130 707740 684310 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 200780000 200780000 0 4279 154 3998 24112;24113;24114 29012;29013 29013 2 ELAGHTGYLSCCR Unmodified 1522.6657 0.66568169 1376 P62873;P62873-2 GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 30.382 30.399 3 6.2783E-23 8113 20211116_3433_TMUAki_TMT10x_P_F5 206.74 190.82 1847200 2885400 33368 2926700 4174600 3566400 2259800 2115900 2355200 1893400 2471600 1720200 2692500 216840 2992400 3956700 3561100 2395300 2217800 2396000 1858400 2380700 3 3 3 3 3 3 3 3 3 3 3 1714700 2668500 28980 2698000 4042100 3447600 2114300 1940500 2181000 1745400 2294600 1596800 2490100 201770 2761600 3829100 3432000 2247500 2043200 2219900 1712700 2210000 2 2 2 2 2 2 2 2 2 2 2 132500 216930 4388 228700 132440 118820 145460 175370 174250 148010 177050 123400 202460 15074 230840 127580 129090 147760 174630 176100 145680 170710 1 1 1 1 1 1 1 1 1 1 1 207590000 186620000 20965000 4280 1376 3999 24115;24116;24117 29014;29015;29016 29015 3 ELAILLGMLDPAEKDEK Oxidation (M) 1899.9863 0.98633036 859 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 1 1 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 78.356 78.338 3;4 0.0027674 28516 20211116_3441_TMUAki_TMT10x_S_F3 61.167 55.262 15493000 27257000 847370 23580000 16459000 27557000 18947000 18717000 17711000 18734000 20479000 14431000 25420000 2087700 24374000 15896000 27630000 19050000 19477000 18171000 18296000 19669000 4 4 4 4 4 4 4 4 4 4 4 9885600 16308000 435750 14250000 8661900 19357000 10703000 11220000 10647000 11406000 12206000 9207700 15210000 1208600 14760000 8383200 19222000 10748000 11824000 10889000 11132000 11726000 2 2 2 2 2 2 2 2 2 2 2 5606900 10948000 411620 9329300 7797100 8200600 8243500 7497900 7064500 7328500 8272600 5223700 10210000 879140 9614900 7512400 8408000 8301900 7653800 7281400 7164400 7942900 2 2 2 2 2 2 2 2 2 2 2 2887000000 1756900000 1130000000 4281 859 4000 24118;24119;24120;24121 29017;29018;29019;29020 29019 1026 4 ELALPGELTQSR Unmodified 1312.6987 0.69867961 334 O75436;O75436-2 VPS26A Vacuolar protein sorting-associated protein 26A yes no 0 0 0 0 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 55.875 55.942 2 4.3212E-12 17275 20211116_3442_TMUAki_TMT10x_S_F4 175.33 137.82 5052400 8442000 4341.3 9874100 7331500 7838000 5380500 7041500 7324700 6379000 6840500 4703900 7882600 405100 9941600 6977700 8092500 5619900 7179600 7349400 6257300 6613800 2 2 1 2 2 2 2 2 2 2 2 2386700 3727200 4341.3 4639200 4902500 5693800 3389400 3271700 3380500 3055000 3149000 2222300 3481300 237160 4684100 4663000 5681000 3516800 3442200 3431200 2992600 3044900 1 1 1 1 1 1 1 1 1 1 1 2665600 4714800 0 5234900 2428900 2144200 1991100 3769800 3944300 3323900 3691600 2481600 4401300 167950 5257500 2314700 2411500 2103000 3737500 3918200 3264700 3568900 1 1 0 1 1 1 1 1 1 1 1 1463300000 826760000 636550000 4282 334 4001 24122;24123;24124;24125 29021;29022;29023;29024 29023 4 ELALQPK Unmodified 797.4647 0.46470391 1001 P41250 GARS Glycine--tRNA ligase yes yes 0 0 0 0 By MS/MS 4 0 1 1 42.965 43.18 2 0.039589 12005 20211116_3442_TMUAki_TMT10x_S_F4 69.176 23.16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4283 1001 4002 24126 29025 29025 1 ELALQPKDDIVDR Unmodified 1510.7991 0.79912193 1001 P41250 GARS Glycine--tRNA ligase yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 49.088 49.074 3 1.3261E-06 14023 20211116_3431_TMUAki_TMT10x_P_F4 117.08 96.984 11324000 18261000 322790 20513000 25744000 25232000 13886000 24010000 26313000 18574000 19498000 10546000 17048000 1441600 20838000 24406000 25386000 15090000 24310000 25983000 18365000 19020000 3 3 3 3 3 3 3 3 3 3 3 5860700 9076400 251060 10570000 19898000 19712000 9253600 12170000 14141000 9084300 10101000 5458800 8474900 916470 10814000 18826000 19348000 10094000 12662000 14029000 8999300 9868700 1 1 1 1 1 1 1 1 1 1 1 5463300 9184400 71731 9942700 5845800 5519400 4632800 11840000 12172000 9490000 9397400 5087400 8572900 525150 10024000 5579100 6037700 4996100 11648000 11954000 9365300 9151200 2 2 2 2 2 2 2 2 2 2 2 1311100000 783420000 527690000 4284 1001 4003 24127;24128;24129;24130 29026;29027;29028;29029 29027 4 ELALRNELIR Unmodified 1225.7143 0.71427009 1475 Q01082;Q01082-3;Q01082-2;P11277;P11277-2;P11277-3 SPTBN1;SPTB Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, erythrocytic yes no 0 0 0 1 By MS/MS 5.5 0.5 1 1 2 44.467 44.622 3 0.00017789 11358 20211116_3444_TMUAki_TMT10x_S_F5 112.94 77.273 520590 944950 5199.8 993250 620830 478450 453330 958930 927790 724680 896330 484760 881920 49411 1002200 591380 529960 483280 943710 921980 717410 865630 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 520590 944950 5199.8 993250 620830 478450 453330 958930 927790 724680 896330 484760 881920 49411 1002200 591380 529960 483280 943710 921980 717410 865630 1 1 1 1 1 1 1 1 1 1 1 138280000 0 138280000 4285 1475 4004 24131;24132 29030 29030 1 ELALVKR Unmodified 827.52289 0.52288749 746 P20645 M6PR Cation-dependent mannose-6-phosphate receptor yes yes 0 0 0 1 By MS/MS 7 0 1 1 35.946 36.38 3 0.095389 9912 20211116_3435_TMUAki_TMT10x_P_F7 40.268 1.4766 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4286 746 4005 24133 29031 29031 1 ELAPAVSVLQLFCSSPK Unmodified 1844.9706 0.97062071 3339;3077 Q9UBF2;Q9UBF2-2;Q9Y678 COPG2;COPG1 Coatomer subunit gamma-2;Coatomer subunit gamma-1 no no 0 0 0 0 By MS/MS By MS/MS 2.33 0.745 1 2 3 4 2 80.57 80.545 3;4 1.9174E-15 27980 20211116_3429_TMUAki_TMT10x_P_F2 145.55 133.4 12109000 19095000 142820 18157000 11644000 18067000 14390000 10977000 9197400 11621000 14084000 11276000 17815000 1130500 18588000 11243000 18251000 14292000 11537000 9757400 11323000 13435000 4 4 4 4 4 4 4 4 4 4 4 9106900 13991000 109220 13425000 7886300 15010000 10307000 8432200 7163300 8753200 10468000 8480200 13053000 839710 13759000 7629300 15046000 10231000 8914900 7542300 8535600 9996100 3 3 3 3 3 3 3 3 3 3 3 3002200 5104300 33603 4732500 3758000 3056300 4082300 2544300 2034100 2868100 3615800 2795600 4761400 290810 4829200 3613600 3205400 4060500 2622400 2215100 2787800 3439100 1 1 1 1 1 1 1 1 1 1 1 4249300000 3165700000 1083600000 4287 3077;3339 4006 24134;24135;24136;24137;24138;24139 29032;29033;29034;29035 29033 4 ELAPAVSVLQLFCSSPKPALR Unmodified 2282.2457 0.24567336 3077 Q9UBF2;Q9UBF2-2 COPG2 Coatomer subunit gamma-2 yes no 0 0 0 1 By MS/MS By MS/MS 5.4 0.49 3 2 3 2 78.931 78.934 3;4 3.5899E-26 25393 20211116_3444_TMUAki_TMT10x_S_F5 163.66 154.24 5733100 8952000 0 8480200 6453500 8296900 6459500 5030700 4798400 5757800 6826700 5337900 8351400 455280 8681700 6186100 8390300 6500400 5301400 5026200 5593400 6522700 2 2 0 2 2 2 2 2 2 2 2 3299600 5026400 0 4850800 3171000 5613300 3473500 3134500 3073900 3374200 3814300 3072200 4689500 265710 4972500 3047700 5615700 3495200 3319300 3170900 3285600 3656600 1 1 0 1 1 1 1 1 1 1 1 2433500 3925600 0 3629300 3282500 2683700 2986000 1896100 1724500 2383500 3012400 2265700 3661900 189570 3709300 3138400 2774600 3005300 1982200 1855300 2307800 2866100 1 1 0 1 1 1 1 1 1 1 1 2841800000 1441200000 1400500000 4288 3077 4007 24140;24141;24142;24143;24144 29036;29037 29037 2 ELAPLFEELR Unmodified 1215.6499 0.6499385 3114 Q9UHA4;Q9UHA4-2 LAMTOR3 Ragulator complex protein LAMTOR3 yes no 0 0 0 0 By MS/MS By MS/MS 3 1 1 1 1 1 75.638 75.549 2 6.8846E-05 25967 20211116_3429_TMUAki_TMT10x_P_F2 100.02 61.007 2177600 3681300 0 3655500 2759500 2367700 2557000 2221000 2309500 2452300 2861600 2027400 3434900 172190 3711700 2639800 2488200 2596600 2272500 2379900 2385500 2743400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2177600 3681300 0 3655500 2759500 2367700 2557000 2221000 2309500 2452300 2861600 2027400 3434900 172190 3711700 2639800 2488200 2596600 2272500 2379900 2385500 2743400 1 1 0 1 1 1 1 1 1 1 1 124700000 0 124700000 4289 3114 4008 24145;24146 29038;29039 29038 2 ELAPLQELIEK Unmodified 1281.718 0.71801807 2065 Q7L9L4;Q9H8S9;Q7L9L4-2 MOB1B;MOB1A MOB kinase activator 1B;MOB kinase activator 1A yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 77.501 77.402 2 0.00063114 28212 20211116_3441_TMUAki_TMT10x_S_F3 85.813 42.73 14534000 24693000 87219 22403000 13872000 23114000 18052000 15155000 16938000 16531000 19124000 13532000 23033000 1135100 23027000 13402000 23324000 18058000 15851000 17358000 16088000 18381000 2 2 1 2 2 2 2 2 2 2 2 6549900 10260000 87219 9909000 5405500 11299000 7219900 6640100 7569100 7001900 8727200 6099200 9572400 608290 10154000 5233900 11320000 7239400 6997100 7726000 6823500 8383000 1 1 1 1 1 1 1 1 1 1 1 7983700 14433000 0 12494000 8466200 11815000 10832000 8514700 9369400 9528900 10397000 7432500 13460000 526790 12873000 8168000 12004000 10818000 8854100 9632200 9264600 9998000 1 1 0 1 1 1 1 1 1 1 1 869450000 501640000 367810000 4290 2065 4009 24147;24148 29040;29041 29041 2 ELAPYDENWFYTR Unmodified 1702.7627 0.76273643 974 P39019 RPS19 40S ribosomal protein S19 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 1.5 2 3 4 4 3 2 10 8 72.079 71.962 2;3 1.8482E-25 22479 20211116_3434_TMUAki_TMT10x_P_F6 231.54 174.19 135850000 228820000 1027600 224060000 150790000 155700000 156750000 80464000 69964000 88253000 145000000 126490000 213500000 11468000 227890000 144740000 161150000 156000000 85840000 77637000 85871000 137550000 33 33 15 33 33 33 33 33 33 33 33 72834000 120190000 661940 118700000 76062000 106510000 86141000 44734000 39257000 48202000 77999000 67815000 112140000 6082600 121020000 73185000 107870000 85398000 48704000 43363000 46933000 74044000 18 18 8 18 18 18 18 18 18 18 18 63015000 108640000 365710 105350000 74733000 49196000 70614000 35729000 30707000 40051000 66999000 58674000 101360000 5385600 106870000 71554000 53279000 70607000 37136000 34273000 38938000 63508000 15 15 7 15 15 15 15 15 15 15 15 20011000000 11739000000 8271300000 4291 974 4010 24149;24150;24151;24152;24153;24154;24155;24156;24157;24158;24159;24160;24161;24162;24163;24164;24165;24166 29042;29043;29044;29045;29046;29047;29048;29049;29050;29051;29052;29053;29054;29055;29056;29057;29058;29059;29060;29061;29062;29063;29064;29065;29066;29067;29068;29069;29070;29071;29072;29073;29074 29058 33 ELAQIAGRPTEDEDEK Unmodified 1799.8537 0.85373628 183 O15355 PPM1G Protein phosphatase 1G yes yes 0 0 0 1 By MS/MS 2 0 1 1 40.777 40.506 3 0.00031109 11731 20211116_3429_TMUAki_TMT10x_P_F2 70.802 46.749 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4292 183 4011 24167 29075 29075 1 ELAQQIEEETIK Unmodified 1429.73 0.73003931 2677 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 0 0 0 0 By MS/MS By MS/MS 2 1 1 1 1 1 61.806 61.806 2 2.6951E-16 18854 20211116_3428_TMUAki_TMT10x_P_F1 200.76 148.04 2813700 4709800 0 4806300 3792500 5872700 3266700 3313100 3353400 3218100 3592200 2619400 4395100 202540 4912300 3620300 5859400 3343700 3494900 3416200 3146800 3457900 1 1 0 1 1 1 1 1 1 1 1 2813700 4709800 0 4806300 3792500 5872700 3266700 3313100 3353400 3218100 3592200 2619400 4395100 202540 4912300 3620300 5859400 3343700 3494900 3416200 3146800 3457900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 513980000 513980000 0 4293 2677 4012 24168;24169 29076;29077 29076 2 ELAQQIQK Unmodified 956.5291 0.52909508 1277;1697 P60842;P60842-2;Q14240;Q14240-2 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 0 0 0 0 By MS/MS 4 0 1 1 37.922 38.08 2 0.0021034 10020 20211116_3442_TMUAki_TMT10x_S_F4 123.92 27.206 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4294 1277;1697 4013 24170 29078 29078 1 ELAQQVQQVAAEYCR Unmodified 1791.8574 0.85738187 710 P17844;P17844-2 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 1.12 4 4 4 4 8 8 64.145 64.297 2;3 2.1868E-85 19284 20211116_3434_TMUAki_TMT10x_P_F6 349.06 315.83 111250000 188680000 1887100 193700000 142790000 165160000 130320000 113470000 98131000 109590000 136980000 103600000 176080000 10773000 196820000 136670000 168860000 131840000 117860000 102620000 107190000 130930000 25 25 17 25 25 25 25 25 25 25 25 55250000 93932000 742020 95383000 76712000 109990000 73844000 60292000 52636000 57114000 69456000 51447000 87654000 5300700 97422000 73510000 110030000 74396000 63714000 55073000 55912000 66481000 12 12 8 12 12 12 12 12 12 12 12 56003000 94752000 1145100 98314000 66074000 55174000 56472000 53175000 45496000 52471000 67520000 52150000 88427000 5471900 99399000 63158000 58824000 57444000 54145000 47546000 51275000 64452000 13 13 9 13 13 13 13 13 13 13 13 27018000000 14044000000 12974000000 4295 710 4014 24171;24172;24173;24174;24175;24176;24177;24178;24179;24180;24181;24182;24183;24184;24185;24186 29079;29080;29081;29082;29083;29084;29085;29086;29087;29088;29089;29090;29091;29092;29093;29094;29095;29096;29097;29098;29099;29100;29101;29102;29103 29086 25 ELAQQVQQVADDYGK Unmodified 1690.8162 0.81622856 2368 Q92841;Q92841-3;Q92841-1;Q92841-2 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 0 0 By MS/MS By MS/MS 3.82 1.38 1 2 4 4 4 2 10 7 65.957 65.926 2;3 1.263E-60 20878 20211116_3431_TMUAki_TMT10x_P_F4 299.66 241.49 81841000 136820000 1359000 141730000 100180000 129680000 93498000 93919000 95376000 91715000 96830000 76203000 127690000 7152500 144060000 95896000 132050000 95247000 97229000 96999000 89665000 93364000 16 16 9 16 16 16 16 16 16 16 16 47641000 79762000 760470 81202000 63018000 98933000 61319000 52354000 53434000 52537000 55713000 44360000 74432000 4296700 83003000 60390000 98646000 62043000 55586000 54786000 51303000 53674000 8 8 4 8 8 8 8 8 8 8 8 34200000 57060000 598500 60525000 37162000 30748000 32179000 41565000 41942000 39178000 41117000 31843000 53256000 2855800 61055000 35506000 33404000 33204000 41643000 42212000 38362000 39690000 8 8 5 8 8 8 8 8 8 8 8 14036000000 7250500000 6785200000 4296 2368 4015 24187;24188;24189;24190;24191;24192;24193;24194;24195;24196;24197;24198;24199;24200;24201;24202;24203 29104;29105;29106;29107;29108;29109;29110;29111;29112;29113;29114;29115;29116;29117;29118;29119;29120;29121;29122;29123 29109 20 ELASALK Unmodified 730.4225 0.42250475 537 P07355;P07355-2;A6NMY6 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 By MS/MS By MS/MS 5 0.894 2 1 2 3 2 39.662 39.75 2 0.05793 10418 20211116_3431_TMUAki_TMT10x_P_F4 64.803 64.803 13609000 23172000 8040.4 19638000 19181000 23212000 16650000 11111000 13408000 12292000 16665000 12671000 21609000 1146700 20337000 18324000 23154000 16921000 11943000 13897000 11956000 15976000 5 5 2 5 5 5 5 5 5 5 5 11816000 19994000 2558.5 16998000 17316000 21500000 14327000 9657600 11620000 10717000 14442000 11001000 18645000 1012000 17619000 16525000 21359000 14605000 10449000 12040000 10423000 13844000 3 3 1 3 3 3 3 3 3 3 3 1793700 3178500 5481.9 2640100 1865500 1711700 2323500 1453700 1787200 1575100 2223400 1670000 2963900 134680 2717400 1799300 1795200 2316300 1494700 1857100 1533300 2131300 2 2 1 2 2 2 2 2 2 2 2 799750000 596100000 203640000 4297 537 4016 24204;24205;24206;24207;24208 29124;29125;29126 29124 3 ELASPVSPELR Unmodified 1196.6401 0.6401021 1939 Q5T4S7;Q5T4S7-3;Q5T4S7-4;Q5T4S7-2;Q5T4S7-5 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 0 0 By MS/MS 3 0 1 1 46.278 46.276 2 0.093019 14475 20211116_3430_TMUAki_TMT10x_P_F3 54.419 39.745 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4298 1939 4017 24209 29127 29127 1 ELASQPDVDGFLVGGASLKPEFVDIINAK Unmodified 3028.5757 0.57571751 1271 P60174;P60174-1;P60174-4 TPI1 Triosephosphate isomerase yes no 0 0 0 1 By MS/MS By MS/MS 5.62 2.2 4 1 3 5 6 8 7 19 15 77.96 77.971 3;4;5 1.3202E-52 28199 20211116_3446_TMUAki_TMT10x_S_F7 207.48 196.82 304640000 494340000 3850400 478890000 318630000 378210000 364460000 211980000 205220000 256730000 324680000 283670000 461210000 26578000 488140000 306840000 387770000 362370000 225250000 219980000 248890000 309510000 48 48 32 48 48 48 48 48 48 48 48 147980000 232600000 2506300 223090000 134950000 223840000 152540000 99406000 100170000 119470000 149860000 137800000 217010000 13347000 228280000 129960000 225190000 152190000 107950000 105960000 115860000 143030000 28 28 18 28 28 28 28 28 28 28 28 156660000 261740000 1344100 255800000 183680000 154380000 211920000 112570000 105050000 137250000 174820000 145880000 244210000 13231000 259860000 176890000 162590000 210180000 117310000 114020000 133030000 166480000 20 20 14 20 20 20 20 20 20 20 20 152590000000 73069000000 79525000000 4299 1271 4018 24210;24211;24212;24213;24214;24215;24216;24217;24218;24219;24220;24221;24222;24223;24224;24225;24226;24227;24228;24229;24230;24231;24232;24233;24234;24235;24236;24237;24238;24239;24240;24241;24242;24243 29128;29129;29130;29131;29132;29133;29134;29135;29136;29137;29138;29139;29140;29141;29142;29143;29144;29145;29146;29147;29148;29149;29150;29151;29152;29153;29154;29155;29156;29157;29158;29159;29160;29161;29162;29163;29164;29165;29166;29167;29168;29169;29170;29171;29172;29173;29174;29175 29170 48 ELASQPDVDGFLVGGASLKPEFVDIINAKQ Unmodified 3156.6343 0.63429502 1271 P60174;P60174-1;P60174-4 TPI1 Triosephosphate isomerase yes no 0 0 0 2 By MS/MS By MS/MS 6.08 2.3 3 1 4 2 7 9 13 13 80.379 80.385 3;4;5 4.9583E-45 25695 20211116_3447_TMUAki_TMT10x_S_F8 187.08 182.37 224320000 367420000 1427300 341260000 307950000 316590000 262580000 224100000 194020000 214460000 270390000 208850000 342750000 16739000 349620000 294050000 321970000 266600000 232230000 203090000 209850000 258470000 43 43 26 43 43 43 43 43 43 43 43 133650000 211920000 993630 192480000 118200000 223370000 146840000 133330000 117010000 124790000 149210000 124440000 197670000 10266000 198200000 114030000 223630000 146530000 139850000 121490000 122230000 142940000 29 29 19 29 29 29 29 29 29 29 29 90668000 155500000 433690 148780000 189750000 93223000 115740000 90767000 77009000 89673000 121180000 84415000 145070000 6473000 151420000 180020000 98341000 120070000 92377000 81606000 87625000 115530000 14 14 7 14 14 14 14 14 14 14 14 99789000000 50240000000 49549000000 4300 1271 4019 24244;24245;24246;24247;24248;24249;24250;24251;24252;24253;24254;24255;24256;24257;24258;24259;24260;24261;24262;24263;24264;24265;24266;24267;24268;24269 29176;29177;29178;29179;29180;29181;29182;29183;29184;29185;29186;29187;29188;29189;29190;29191;29192;29193;29194;29195;29196;29197;29198;29199;29200;29201;29202;29203;29204;29205;29206;29207;29208;29209;29210;29211;29212;29213;29214;29215;29216;29217;29218 29217 43 ELASTERELDEAR Unmodified 1517.7322 0.73216458 2137 Q8IVB5 LIX1L LIX1-like protein yes yes 0 0 0 1 By MS/MS 1 0 1 1 36.912 36.912 3 0.00023261 8773 20211116_3428_TMUAki_TMT10x_P_F1 83.692 43.467 397510 696270 0 797860 1260700 1080900 633550 709770 764280 499700 721140 370040 650070 34529 811010 1192400 1075300 679480 734090 770270 496680 696990 1 1 0 1 1 1 1 1 1 1 1 397510 696270 0 797860 1260700 1080900 633550 709770 764280 499700 721140 370040 650070 34529 811010 1192400 1075300 679480 734090 770270 496680 696990 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35144000 35144000 0 4301 2137 4020 24270 29219 29219 1 ELAVQIQK Unmodified 927.53893 0.53893149 973 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.667 2 5 2 5 4 47.798 47.954 2;3 0.00041033 13899 20211116_3442_TMUAki_TMT10x_S_F4 141.47 39.477 35128000 54405000 232830 61271000 53487000 55968000 41725000 39601000 35485000 37413000 44624000 32709000 50791000 3351800 61943000 51002000 56976000 42745000 41024000 36697000 36630000 42764000 8 8 3 8 8 8 8 8 8 8 8 19364000 28703000 0 32938000 37975000 42004000 26530000 22104000 19049000 20441000 23827000 18029000 26799000 1838900 33438000 36123000 41784000 27278000 23428000 19876000 20032000 22838000 3 3 0 3 3 3 3 3 3 3 3 15764000 25702000 232830 28334000 15512000 13965000 15195000 17498000 16436000 16972000 20797000 14680000 23993000 1512900 28504000 14879000 15192000 15468000 17596000 16821000 16597000 19927000 5 5 3 5 5 5 5 5 5 5 5 2602400000 1397200000 1205200000 4302 973 4021 24271;24272;24273;24274;24275;24276;24277;24278;24279 29220;29221;29222;29223;29224;29225;29226;29227;29228 29224 9 ELAVQIYEEAR Unmodified 1319.6721 0.67213051 104 O00571;O00571-2;O15523;O15523-2;O15523-3 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 0 0 By MS/MS By MS/MS 2.71 1.03 1 2 2 2 4 3 58.793 58.598 2 2.9365E-14 19044 20211116_3429_TMUAki_TMT10x_P_F2 157.77 127.2 32843000 55938000 139360 51304000 37170000 52357000 37407000 39809000 36766000 38734000 43098000 30579000 52179000 2642800 52681000 35637000 52991000 37911000 41076000 37656000 37874000 41379000 8 8 3 8 8 8 8 8 8 8 8 19090000 31327000 36734 28724000 21578000 37566000 22320000 22720000 21324000 22309000 24985000 17773000 29221000 1429000 29619000 20696000 37390000 22571000 23837000 21867000 21805000 23989000 4 4 1 4 4 4 4 4 4 4 4 13752000 24612000 102630 22580000 15593000 14791000 15087000 17089000 15442000 16425000 18113000 12805000 22958000 1213800 23062000 14941000 15600000 15340000 17239000 15789000 16069000 17390000 4 4 2 4 4 4 4 4 4 4 4 1806700000 720430000 1086300000 4303 104 4022 24280;24281;24282;24283;24284;24285;24286 29229;29230;29231;29232;29233;29234;29235;29236;29237;29238 29232 10 ELAVQIYEEARK Unmodified 1447.7671 0.76709352 104 O00571;O00571-2;O15523;O15523-2;O15523-3 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 0 1 By MS/MS By MS/MS 4.71 1.03 1 2 2 2 4 3 55.405 55.472 3 2.6584E-15 17078 20211116_3442_TMUAki_TMT10x_S_F4 187.57 151.23 71059000 112980000 483320 124810000 83679000 99247000 74312000 75809000 72860000 76644000 88648000 66164000 105470000 6194700 126110000 80008000 102160000 75822000 78285000 74747000 74821000 85027000 12 12 8 12 12 12 12 12 12 12 12 35082000 53307000 225760 60743000 48461000 67331000 39627000 36091000 35813000 37112000 42605000 32664000 49769000 3034600 61541000 46241000 67484000 40539000 38302000 36842000 36203000 40889000 6 6 3 6 6 6 6 6 6 6 6 35977000 59675000 257560 64065000 35218000 31915000 34685000 39718000 37047000 39533000 46043000 33500000 55700000 3160100 64566000 33767000 34672000 35283000 39983000 37905000 38617000 44138000 6 6 5 6 6 6 6 6 6 6 6 4205300000 2326100000 1879200000 4304 104 4023 24287;24288;24289;24290;24291;24292;24293 29239;29240;29241;29242;29243;29244;29245;29246;29247;29248;29249;29250 29245 12 ELCELKPK Unmodified 1015.5372 0.53721693 3117 Q9UHD1;Q9UHD1-2 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 yes no 0 0 0 1 By MS/MS 5.5 0.5 1 1 2 41.828 41.973 3 0.0095245 10531 20211116_3445_TMUAki_TMT10x_S_F6 74.376 33.945 5823800 10154000 53709 10547000 6168800 4706400 6042400 5266800 5296800 4626500 7142900 5422900 9475800 537720 10644000 5915000 5167400 6112600 5307500 5486700 4544800 6833400 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5823800 10154000 53709 10547000 6168800 4706400 6042400 5266800 5296800 4626500 7142900 5422900 9475800 537720 10644000 5915000 5167400 6112600 5307500 5486700 4544800 6833400 3 3 3 3 3 3 3 3 3 3 3 159490000 0 159490000 4305 3117 4024 24294;24295 29251;29252;29253 29253 3 ELCGPWPSHQLLTNQLQR Unmodified 2176.0848 0.084756043 1661 Q13769 THOC5 THO complex subunit 5 homolog yes yes 0 0 0 0 By MS/MS 1 0 1 1 57.879 57.879 3 0.060309 17236 20211116_3428_TMUAki_TMT10x_P_F1 37.285 27.004 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4306 1661 4025 24296 29254 29254 1 ELCQGLGQPGSVLR Unmodified 1512.7719 0.77186132 651 P13489 RNH1 Ribonuclease inhibitor yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 50.625 50.747 2 2.7428E-33 13747 20211116_3434_TMUAki_TMT10x_P_F6 233 167.65 2983100 5336100 0 6060100 4620100 5647200 3393500 4842100 4478400 4028000 4459600 2777500 4981900 256190 6125000 4398200 5760400 3539900 4939300 4507800 3967500 4302600 2 2 0 2 2 2 2 2 2 2 2 1510700 2763100 0 3182800 3399600 4504900 2452000 2446900 2293300 2043200 2284300 1406600 2579800 147820 3237100 3235600 4461500 2531800 2579600 2339700 2012200 2203900 1 1 0 1 1 1 1 1 1 1 1 1472400 2573000 0 2877300 1220500 1142300 941530 2395100 2185100 1984700 2175300 1370900 2402000 108380 2887900 1162600 1298900 1008100 2359700 2168200 1955300 2098700 1 1 0 1 1 1 1 1 1 1 1 522930000 220710000 302220000 4307 651 4026 24297;24298;24299 29255;29256;29257 29256 3 ELDALDANDELTPLGR Unmodified 1740.853 0.853008 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 By MS/MS By MS/MS 2.08 0.828 4 4 5 7 6 68.386 68.15 2;3 5.381E-162 23461 20211116_3430_TMUAki_TMT10x_P_F3 426.54 387.74 48921000 84408000 199490 78561000 52265000 76285000 54324000 60561000 63166000 64476000 64155000 45546000 78739000 3625500 80524000 50135000 77501000 55269000 62485000 63909000 62809000 61858000 16 16 4 16 16 16 16 16 16 16 16 22186000 36635000 40898 35159000 25705000 46218000 27286000 26807000 28463000 27912000 27732000 20655000 34178000 1609200 36138000 24669000 45966000 27631000 28269000 28879000 27215000 26775000 6 6 1 6 6 6 6 6 6 6 6 26735000 47773000 158590 43402000 26560000 30067000 27038000 33753000 34703000 36563000 36423000 24891000 44561000 2016300 44386000 25466000 31535000 27638000 34216000 35030000 35594000 35083000 10 10 3 10 10 10 10 10 10 10 10 12675000000 6893700000 5781300000 4308 1546 4027 24300;24301;24302;24303;24304;24305;24306;24307;24308;24309;24310;24311;24312 29258;29259;29260;29261;29262;29263;29264;29265;29266;29267;29268;29269;29270;29271;29272;29273;29274;29275 29263 18 ELDDATEANEGLSR Unmodified 1518.6798 0.67979466 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS By MS/MS 1.17 0.373 5 1 3 3 39.154 39.126 2;3 2.954E-154 9691 20211116_3428_TMUAki_TMT10x_P_F1 420.46 388.24 2613700 4124000 42346 5217300 7273700 4547600 3252400 3547700 4362800 2867300 4274300 2433800 3852200 310750 5235300 6875200 4651700 3543700 3637200 4386600 2828400 4126000 5 5 3 5 5 5 5 5 5 5 5 1329500 2108500 23956 2523200 6045700 3494300 1986400 1908600 2514600 1564500 2320600 1238000 1969000 188030 2559300 5695600 3464200 2243500 2010300 2528200 1542100 2244600 3 3 2 3 3 3 3 3 3 3 3 1284200 2015500 18390 2694100 1228000 1053400 1266100 1639100 1848200 1302800 1953700 1195800 1883200 122720 2675900 1179500 1187500 1300200 1626900 1858500 1286300 1881400 2 2 1 2 2 2 2 2 2 2 2 184050000 94039000 90013000 4309 935 4028 24313;24314;24315;24316;24317;24318 29276;29277;29278;29279;29280;29281 29276 6 ELDELLNCLHPQGIR Unmodified 1805.9094 0.90941744 3135 Q9UIG0;Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B yes no 0 0 0 0 By MS/MS By MS/MS 4.8 1.17 1 1 1 2 4 1 71.087 71.039 3 2.8047E-05 23004 20211116_3431_TMUAki_TMT10x_P_F4 95.854 72.385 9704700 16493000 209900 16168000 10880000 15589000 12439000 10159000 8743300 10157000 11161000 9037600 15389000 1016700 16508000 10484000 15794000 12421000 10603000 9142300 9920300 10692000 3 3 3 3 3 3 3 3 3 3 3 5881200 10030000 86189 10006000 6302300 12229000 8081000 6133700 5603700 6278200 7023400 5476600 9358700 573810 10243000 6092800 12184000 8027200 6548200 5859600 6125700 6731300 2 2 2 2 2 2 2 2 2 2 2 3823500 6463600 123710 6161100 4577300 3360000 4357600 4024900 3139600 3879100 4137400 3561000 6030100 442850 6264900 4390900 3610700 4393900 4054300 3282700 3794600 3960300 1 1 1 1 1 1 1 1 1 1 1 1782500000 1401500000 380990000 4310 3135 4029 24319;24320;24321;24322;24323 29282;29283;29284 29282 3 ELDGIIQDGVHNITK Unmodified 1650.8577 0.85769944 2167 Q8IYB8 SUPV3L1 ATP-dependent RNA helicase SUPV3L1, mitochondrial yes yes 0 0 0 0 By MS/MS 4 0 1 1 63.274 63.38 3 0.0038306 19862 20211116_3431_TMUAki_TMT10x_P_F4 63.691 43.852 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4311 2167 4030 24324 29285 29285 1 ELDLSNNCLGDAGILQLVESVR Unmodified 2414.2111 0.21113835 651 P13489 RNH1 Ribonuclease inhibitor yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 81.154 81.117 3 3.752E-05 29705 20211116_3441_TMUAki_TMT10x_S_F3 72.271 61.637 1740800 2839400 42011 2823200 2604700 2201000 2442400 1358500 1258100 1724600 2230100 1621100 2649400 186560 2872000 2495400 2261700 2449300 1434700 1366200 1669200 2121200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1740800 2839400 42011 2823200 2604700 2201000 2442400 1358500 1258100 1724600 2230100 1621100 2649400 186560 2872000 2495400 2261700 2449300 1434700 1366200 1669200 2121200 2 2 1 2 2 2 2 2 2 2 2 263320000 0 263320000 4312 651 4031 24325;24326 29286;29287;29288 29287 3 ELDNFCNPIIYKPK Unmodified 1749.876 0.87599205 442 O95757 HSPA4L Heat shock 70 kDa protein 4L yes yes 0 0 0 1 By MS/MS 8 0 1 1 62.224 62.411 3 0.10295 19144 20211116_3436_TMUAki_TMT10x_P_F8 36.392 22.134 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4313 442 4032 24327 29289 29289 1 ELDPTNMTYITNQAAVYFEK Oxidation (M) 2363.0991 0.099128282 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 1 0 By MS/MS By MS/MS 5.65 1.41 1 3 4 4 3 2 10 7 76.888 76.894 2;3 1.8896E-31 25426 20211116_3431_TMUAki_TMT10x_P_F4 180.85 165.95 51514000 96092000 619630 80847000 62246000 91330000 66109000 69239000 72126000 72798000 73197000 47967000 89607000 4736800 83710000 59802000 91898000 67042000 71619000 73151000 70952000 70577000 18 18 8 18 18 18 18 18 18 18 18 24934000 45044000 243510 38348000 22897000 53503000 28785000 32952000 34232000 32791000 33575000 23216000 42006000 2064000 39821000 22104000 53108000 29059000 34535000 34563000 32032000 32409000 10 10 4 10 10 10 10 10 10 10 10 26580000 51047000 376120 42498000 39349000 37827000 37324000 36287000 37895000 40007000 39622000 24751000 47601000 2672800 43889000 37698000 38789000 37983000 37084000 38588000 38920000 38169000 8 8 4 8 8 8 8 8 8 8 8 21408000000 10276000000 11132000000 4314 897 4033 24328;24329;24330;24331;24332;24333;24334;24335;24336;24337;24338;24339;24340;24341;24342;24343;24344 29290;29291;29292;29293;29294;29295;29296;29297;29298;29299;29300;29301;29302;29303;29304;29305;29306;29307;29308;29309 29293 1100 20 ELDPTNMTYITNQAAVYFEK Unmodified 2347.1042 0.10421366 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.22 0.786 2 3 4 4 5 71.005 71.004 2;3 5.1353E-24 28138 20211116_3446_TMUAki_TMT10x_S_F7 163.99 151.36 34457000 57410000 344650 58144000 39872000 38794000 45557000 15377000 13404000 18801000 34107000 32082000 53573000 2632100 58975000 38372000 40188000 44918000 16919000 15778000 18221000 32261000 10 10 5 10 10 10 10 10 10 10 10 17672000 28517000 192520 29432000 17714000 25616000 19308000 8605700 7924400 9890500 17192000 16455000 26612000 1191200 29904000 17025000 25949000 19149000 9646600 8888700 9606700 16297000 6 6 3 6 6 6 6 6 6 6 6 16784000 28894000 152130 28712000 22158000 13178000 26249000 6771400 5479500 8910100 16916000 15628000 26960000 1440900 29071000 21348000 14239000 25768000 7272100 6889100 8614000 15964000 4 4 2 4 4 4 4 4 4 4 4 16014000000 6309700000 9703900000 4315 897 4033 24345;24346;24347;24348;24349;24350;24351;24352;24353 29310;29311;29312;29313;29314;29315;29316;29317;29318;29319 29317 10 ELDTVTLEDIKEHVK Unmodified 1767.9254 0.92544466 203 O43242 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.894 2 1 2 3 2 64.075 64.087 4 2.769E-24 19629 20211116_3445_TMUAki_TMT10x_S_F6 195.54 177.17 9623200 18200000 77346 13170000 15702000 21794000 13078000 19181000 19081000 18165000 16004000 8960500 16963000 929330 13920000 14993000 21612000 13588000 19604000 19040000 17783000 15534000 4 4 2 4 4 4 4 4 4 4 4 5020500 9301900 77346 6562600 9832700 15897000 8342400 9567300 9514600 8690900 7825600 4675200 8669500 555720 7028000 9395300 15477000 8576200 10021000 9568300 8524100 7601400 2 2 2 2 2 2 2 2 2 2 2 4602700 8897800 0 6607200 5869100 5897200 4735500 9613900 9566200 9474000 8178500 4285300 8294000 373610 6891600 5597400 6135000 5012200 9583000 9471400 9258600 7932500 2 2 0 2 2 2 2 2 2 2 2 3371700000 2626800000 744870000 4316 203 4034 24354;24355;24356;24357;24358 29320;29321;29322;29323 29323 4 ELEAELEDER Unmodified 1231.5568 0.55682598 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS 1 0 1 1 45.446 45.224 2 8.5962E-09 14130 20211116_3439_TMUAki_TMT10x_S_F1 176.33 131.98 578020 1044300 0 1162800 590660 611430 532930 1149500 1093200 949690 981970 538180 974860 46766 1169600 564820 668980 560940 1135600 1083700 935750 950710 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 578020 1044300 0 1162800 590660 611430 532930 1149500 1093200 949690 981970 538180 974860 46766 1169600 564820 668980 560940 1135600 1083700 935750 950710 1 1 0 1 1 1 1 1 1 1 1 71720000 0 71720000 4317 935 4035 24359 29324 29324 1 ELEAELEDERK Unmodified 1359.6518 0.65178899 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 42.65 42.542 3 9.8833E-15 10967 20211116_3428_TMUAki_TMT10x_P_F1 190.36 135 13197000 18548000 128090 22565000 18004000 16628000 13158000 10529000 11468000 10873000 14299000 12289000 17322000 1257400 22647000 17148000 17168000 13548000 11023000 11841000 10605000 13706000 4 4 3 4 4 4 4 4 4 4 4 8169000 11076000 69968 13018000 12999000 12092000 7760200 6426600 7023900 6602700 8294700 7606700 10343000 810130 13129000 12337000 12248000 8122700 6825300 7222900 6441300 7962300 2 2 2 2 2 2 2 2 2 2 2 5028300 7471300 58119 9547200 5005000 4535500 5397700 4101900 4443800 4270400 6004200 4682100 6979200 447310 9518200 4810900 4919900 5425100 4197500 4617900 4163700 5743700 2 2 1 2 2 2 2 2 2 2 2 1391500000 902650000 488850000 4318 935 4036 24360;24361;24362;24363 29325;29326;29327;29328 29325 4 ELEAELEDERKQR Unmodified 1643.8115 0.81147753 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 2 By matching By MS/MS 1 0 2 1 1 36.414 36.384 4 8.2071E-09 10500 20211116_3439_TMUAki_TMT10x_S_F1 122.52 94.848 215690 427470 2814.9 486520 337620 262990 232460 625760 603780 436400 501590 200850 399090 22213 488810 321250 289860 252790 612250 594370 434010 487020 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 215690 427470 2814.9 486520 337620 262990 232460 625760 603780 436400 501590 200850 399090 22213 488810 321250 289860 252790 612250 594370 434010 487020 1 1 1 1 1 1 1 1 1 1 1 82483000 63888000 18594000 4319 935 4037 24364;24365 29329 29329 1 ELEAIFGRPVVDGEEGEPHSISPR Unmodified 2619.2929 0.29289414 948 P36507 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 yes yes 0 0 0 1 By MS/MS 3 0 1 1 58.494 58.084 4 1.4027E-07 20405 20211116_3441_TMUAki_TMT10x_S_F3 93.21 79.783 4382300 7817400 117200 8006700 4148500 4355300 4443800 5028500 4806200 5147600 5765800 4081200 7295200 469270 8100200 3992300 4677300 4503300 5082200 4907700 5022500 5532400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4382300 7817400 117200 8006700 4148500 4355300 4443800 5028500 4806200 5147600 5765800 4081200 7295200 469270 8100200 3992300 4677300 4503300 5082200 4907700 5022500 5532400 2 2 2 2 2 2 2 2 2 2 2 377070000 0 377070000 4320 948 4038 24366 29330;29331 29330 2 ELEASEELDTICPK Unmodified 1632.7553 0.75526779 376 O76003 GLRX3 Glutaredoxin-3 yes yes 0 0 0 0 By MS/MS By MS/MS 2.27 1.14 4 2 3 2 5 6 59.668 59.46 2;3 7.7193E-51 17910 20211116_3428_TMUAki_TMT10x_P_F1 283.52 247.98 53348000 85811000 869550 90100000 65115000 83283000 58086000 62941000 58491000 55826000 69792000 49678000 80086000 5309500 91512000 62305000 84806000 59299000 64808000 59888000 54816000 66976000 12 12 8 12 12 12 12 12 12 12 12 31706000 49469000 509450 51163000 43525000 64260000 38637000 39707000 36022000 34143000 42319000 29525000 46166000 3216200 52271000 41638000 64104000 39366000 41444000 36984000 33575000 40629000 7 7 5 7 7 7 7 7 7 7 7 21642000 36341000 360100 38936000 21590000 19023000 19449000 23235000 22469000 21683000 27473000 20153000 33920000 2093300 39240000 20667000 20702000 19933000 23364000 22904000 21241000 26347000 5 5 3 5 5 5 5 5 5 5 5 5457800000 3066000000 2391800000 4321 376 4039 24367;24368;24369;24370;24371;24372;24373;24374;24375;24376;24377 29332;29333;29334;29335;29336;29337;29338;29339;29340;29341;29342;29343;29344;29345 29334 14 ELEATVR Unmodified 816.43413 0.43413207 2039 Q702N8;Q702N8-2 XIRP1 Xin actin-binding repeat-containing protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 31.993 31.884 2 0.0061716 8658 20211116_3439_TMUAki_TMT10x_S_F1 104.8 19.442 4052400 7230100 0 6301600 5305000 6549900 4967300 3620800 4166900 4140100 5920700 3772900 6743000 321870 6498000 5076100 6591500 5031400 3844800 4336400 4022100 5657200 4 4 0 4 4 4 4 4 4 4 4 2615700 4729800 0 4135200 3655200 5034100 3240700 2318900 2712800 2686600 3876500 2435300 4411200 209860 4274000 3492900 5011900 3292500 2505700 2824200 2608700 3703500 2 2 0 2 2 2 2 2 2 2 2 1436700 2500300 0 2166400 1649800 1515900 1726600 1301900 1454200 1453500 2044200 1337600 2331800 112000 2224000 1583200 1579600 1738900 1339100 1512200 1413400 1953700 2 2 0 2 2 2 2 2 2 2 2 301600000 187570000 114030000 4322 2039 4040 24378;24379;24380;24381 29346;29347;29348;29349 29348 4 ELEDATETADAMNR Oxidation (M) 1580.6624 0.66243003 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 35.902 35.885 3 0.0012609 8318 20211116_3428_TMUAki_TMT10x_P_F1 67.234 57.177 622050 1153600 5651.8 1327100 1705000 1459500 949820 1116400 1233500 938510 1149100 579200 1077100 66804 1343600 1615800 1471000 1011700 1147100 1239500 923920 1111100 2 2 1 2 2 2 2 2 2 2 2 383400 678030 0 726360 1460200 1230500 695950 674650 743390 616200 659940 356940 632860 41666 745140 1380600 1210000 747360 712240 751240 604220 639200 1 1 0 1 1 1 1 1 1 1 1 238650 475600 5651.8 600780 244760 228990 253880 441760 490150 322310 489180 222250 444260 25139 598490 235260 260990 264350 434830 488270 319700 471920 1 1 1 1 1 1 1 1 1 1 1 163310000 121710000 41599000 4323 934 4041 24382;24383 29350;29351 29350 1170 2 ELEEEAEEEQR Unmodified 1389.5896 0.58958267 2791 Q9H2J4 PDCL3 Phosducin-like protein 3 yes yes 0 0 0 0 By matching By MS/MS 1 0 2 1 1 34.251 34.246 2 4.4973E-11 9662 20211116_3439_TMUAki_TMT10x_S_F1 169.93 143.55 140620 238960 3149.9 252230 116630 86957 122820 102560 122080 114040 194480 130960 223020 14258 253900 112180 99130 124230 103830 126790 110900 185370 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 140620 238960 3149.9 252230 116630 86957 122820 102560 122080 114040 194480 130960 223020 14258 253900 112180 99130 124230 103830 126790 110900 185370 1 1 1 1 1 1 1 1 1 1 1 22820000 14612000 8208200 4324 2791 4042 24384;24385 29352 29352 1 ELEEIVQPIISK Unmodified 1396.7813 0.7813466 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 By MS/MS By MS/MS 4 1.33 3 4 4 4 3 9 9 75.984 75.947 2;3 1.5285E-16 25243 20211116_3433_TMUAki_TMT10x_P_F5 208.56 160.27 76160000 126930000 1107300 150030000 89236000 100330000 86237000 75940000 78498000 82371000 94697000 70920000 118520000 7359200 150680000 85545000 104730000 87391000 78634000 80771000 80183000 90850000 22 22 17 22 22 22 22 22 22 22 22 30682000 49103000 524030 59726000 38106000 59271000 37318000 31572000 32753000 33687000 36989000 28571000 45858000 3039700 60174000 36544000 59787000 37754000 33562000 33671000 32814000 35551000 10 10 7 10 10 10 10 10 10 10 10 45479000 77826000 583290 90307000 51130000 41059000 48918000 44367000 45745000 48684000 57708000 42349000 72666000 4319500 90510000 49001000 44940000 49637000 45072000 47101000 47369000 55298000 12 12 10 12 12 12 12 12 12 12 12 7552500000 4281600000 3270900000 4325 614 4043 24386;24387;24388;24389;24390;24391;24392;24393;24394;24395;24396;24397;24398;24399;24400;24401;24402;24403 29353;29354;29355;29356;29357;29358;29359;29360;29361;29362;29363;29364;29365;29366;29367;29368;29369;29370;29371;29372;29373;29374;29375;29376;29377 29362 25 ELEELKEIEADLERQEK Unmodified 2100.0586 0.058643676 2228 Q8NBT2 SPC24 Kinetochore protein Spc24 yes yes 0 0 0 2 By MS/MS 1 0 1 1 74.959 74.883 4 4.9249E-29 26154 20211116_3439_TMUAki_TMT10x_S_F1 184.8 154.26 6064000 10882000 18662 8909300 8075500 6908100 7607700 4226500 4957800 5096100 6790000 5646400 10147000 548320 9198300 7732500 7100700 7659200 4458500 5224700 4941300 6493400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6064000 10882000 18662 8909300 8075500 6908100 7607700 4226500 4957800 5096100 6790000 5646400 10147000 548320 9198300 7732500 7100700 7659200 4458500 5224700 4941300 6493400 1 1 1 1 1 1 1 1 1 1 1 1087100000 0 1087100000 4326 2228 4044 24404 29378 29378 1 ELEELSLEAQGIK Unmodified 1457.7613 0.76133944 295 O60841 EIF5B Eukaryotic translation initiation factor 5B yes yes 0 0 0 0 By MS/MS 1.5 0.5 1 1 2 69.014 68.863 2;3 2.2644E-06 23303 20211116_3429_TMUAki_TMT10x_P_F2 102.87 81.919 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4327 295 4045 24405;24406 29379;29380 29380 2 ELEEQFALEAGGYQAGAAR Unmodified 2008.949 0.94903365 995 P41219;P41219-2 PRPH Peripherin yes no 0 0 0 0 By MS/MS 3 0 1 1 64.492 64.041 3 4.468E-07 22878 20211116_3441_TMUAki_TMT10x_S_F3 89.846 77.87 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4328 995 4046 24407 29381 29381 1 ELEEREIDDTYIEDAADVDAR Unmodified 2466.1034 0.10342162 2574 Q99459 CDC5L Cell division cycle 5-like protein yes yes 0 0 0 1 By MS/MS 1 0 2 2 59.971 59.678 3 8.673E-35 20042 20211116_3439_TMUAki_TMT10x_S_F1 184.38 169.94 1742600 3426800 51178 3140900 2216100 2072500 1811900 2714100 2426300 2663800 2690700 1623000 3196500 198800 3208500 2117800 2191700 1878100 2725600 2450800 2603700 2587400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1742600 3426800 51178 3140900 2216100 2072500 1811900 2714100 2426300 2663800 2690700 1623000 3196500 198800 3208500 2117800 2191700 1878100 2725600 2450800 2603700 2587400 1 1 1 1 1 1 1 1 1 1 1 314480000 0 314480000 4329 2574 4047 24408;24409 29382;29383 29382 2 ELEEREIDDTYIEDAADVDARK Unmodified 2594.1984 0.19838463 2574 Q99459 CDC5L Cell division cycle 5-like protein yes yes 0 0 0 2 By MS/MS By MS/MS 1 0 2 1 1 57.21 57.059 4 5.233E-14 18975 20211116_3439_TMUAki_TMT10x_S_F1 130.09 115.32 10399000 17822000 166800 21502000 13719000 15691000 11257000 9584600 11084000 11018000 13052000 9683100 16643000 946540 21588000 13095000 16207000 11542000 10096000 11353000 10701000 12530000 2 2 1 2 2 2 2 2 2 2 2 5409700 8605800 166800 10839000 8339300 11787000 7060100 5242000 5755600 5308600 6854200 5038200 8038500 644990 10914000 7974100 11802000 7187800 5662000 5951400 5181900 6578000 1 1 1 1 1 1 1 1 1 1 1 4989600 9215900 0 10662000 5379200 3904500 4197000 4342600 5328100 5709000 6197600 4644900 8604800 301550 10674000 5120500 4404400 4354000 4434100 5401800 5519400 5951600 1 1 0 1 1 1 1 1 1 1 1 1927600000 881540000 1046100000 4330 2574 4048 24410;24411 29384;29385 29385 2 ELEFLSMANVELSSLAR Oxidation (M) 1923.9612 0.96117824 2666 Q9BTT0;Q9BTT0-2 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E yes no 0 0 1 0 By MS/MS 4 0 1 1 79.26 79.273 3 0.0016289 26404 20211116_3431_TMUAki_TMT10x_P_F4 61.52 48.101 2499200 3954200 21693 3489300 2447300 4287300 2664100 2618300 2281300 2794500 3059600 2327200 3688000 226690 3604500 2353300 4280900 2679100 2751600 2365200 2722000 2927400 1 1 1 1 1 1 1 1 1 1 1 2499200 3954200 21693 3489300 2447300 4287300 2664100 2618300 2281300 2794500 3059600 2327200 3688000 226690 3604500 2353300 4280900 2679100 2751600 2365200 2722000 2927400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 640340000 640340000 0 4331 2666 4049 24412 29386 29386 2886 1 ELEFYLR Unmodified 968.49673 0.49673232 1338 P62241 RPS8 40S ribosomal protein S8 yes yes 0 0 0 0 By MS/MS By MS/MS 3 1.41 2 2 2 2 2 5 5 60.448 60.329 2 0.0010764 19018 20211116_3442_TMUAki_TMT10x_S_F4 187.69 123.17 89629000 147430000 0 145490000 112400000 128160000 100880000 95250000 88409000 95944000 112740000 83443000 137560000 6533000 148300000 107410000 130890000 102540000 98526000 91350000 93676000 108000000 11 11 0 11 11 11 11 11 11 11 11 39988000 64040000 0 63352000 53382000 79732000 48669000 42424000 40106000 42540000 48952000 37228000 59754000 2931700 64923000 51029000 79377000 49349000 45020000 41489000 41542000 46948000 5 5 0 5 5 5 5 5 5 5 5 49641000 83388000 0 82137000 59018000 48432000 52208000 52827000 48304000 53405000 63790000 46215000 77805000 3601300 83378000 56376000 51517000 53192000 53506000 49861000 52134000 61057000 6 6 0 6 6 6 6 6 6 6 6 15830000000 8234200000 7595600000 4332 1338 4050 24413;24414;24415;24416;24417;24418;24419;24420;24421;24422 29387;29388;29389;29390;29391;29392;29393;29394;29395;29396;29397 29395 11 ELEFYLRK Unmodified 1096.5917 0.59169534 1338 P62241 RPS8 40S ribosomal protein S8 yes yes 0 0 0 1 By MS/MS By MS/MS 6.8 0.748 2 2 1 2 3 53.661 53.932 3 0.00082596 17376 20211116_3446_TMUAki_TMT10x_S_F7 121.53 47.233 23632000 36566000 437600 41429000 34433000 33169000 23788000 31187000 26815000 25943000 30046000 22007000 34138000 2518400 41797000 32775000 34256000 24780000 31652000 27262000 25553000 28885000 4 4 4 4 4 4 4 4 4 4 4 11213000 16801000 141350 18722000 20398000 22845000 12704000 14741000 12444000 12335000 13548000 10441000 15685000 1190000 19025000 19374000 22837000 13281000 15325000 12710000 12146000 13035000 2 2 2 2 2 2 2 2 2 2 2 12419000 19765000 296250 22707000 14035000 10324000 11084000 16445000 14371000 13608000 16499000 11566000 18454000 1328400 22772000 13401000 11419000 11499000 16327000 14552000 13407000 15850000 2 2 2 2 2 2 2 2 2 2 2 3383100000 1317200000 2065900000 4333 1338 4051 24423;24424;24425;24426;24427 29398;29399;29400;29401 29401 4 ELEIAQDR Unmodified 972.48762 0.4876242 641 P12270;P12270-2 TPR Nucleoprotein TPR yes no 0 0 0 0 By MS/MS 1.67 0.471 1 2 3 36.348 36.394 2 0.040133 8521 20211116_3440_TMUAki_TMT10x_S_F2 60.91 8.4284 635820 1059900 9554.9 1255200 536330 452910 567140 599820 679430 596130 870390 592080 989700 60143 1254700 515610 514190 577140 602330 693060 582370 833720 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 635820 1059900 9554.9 1255200 536330 452910 567140 599820 679430 596130 870390 592080 989700 60143 1254700 515610 514190 577140 602330 693060 582370 833720 2 2 1 2 2 2 2 2 2 2 2 35358000 0 35358000 4334 641 4052 24428;24429;24430 29402;29403 29403 2 ELEIEER Unmodified 916.45018 0.45017606 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 37.09 37.06 2 0.022558 10726 20211116_3439_TMUAki_TMT10x_S_F1 85.272 3.6589 2192000 3395400 0 3736000 2836100 2918900 2395700 2325800 2462400 1981900 2809600 2040900 3169500 176170 3775000 2707400 3010700 2455200 2384400 2514500 1949800 2699600 2 2 0 2 2 2 2 2 2 2 2 1046900 1646000 0 1867000 1799400 1917000 1233000 1000400 1119900 872610 1366600 974740 1536700 92959 1889800 1710800 1929300 1276800 1059500 1153000 857500 1310700 1 1 0 1 1 1 1 1 1 1 1 1145100 1749400 0 1868900 1036700 1001900 1162800 1325500 1342600 1109300 1443000 1066100 1632800 83211 1885200 996550 1081400 1178400 1324800 1361500 1092300 1388900 1 1 0 1 1 1 1 1 1 1 1 122300000 52351000 69951000 4335 1684 4053 24431;24432 29404;29405 29405 2 ELEIEERER Unmodified 1201.5939 0.59388018 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 32.174 32.109 3 3.2879E-06 8744 20211116_3439_TMUAki_TMT10x_S_F1 166.55 20.663 2650700 3927300 70235 4214900 3573500 3838700 2812600 2546200 2590500 2342800 3169100 2468600 3665600 298140 4274000 3411600 3904800 2885900 2648000 2665600 2296500 3039200 5 5 5 5 5 5 5 5 5 5 5 1881600 2757700 53844 2967600 2642300 3191200 2036400 1837100 1894700 1707200 2233700 1752400 2574000 216830 3016000 2521600 3206800 2092900 1932300 1945800 1672700 2144300 4 4 4 4 4 4 4 4 4 4 4 769070 1169500 16392 1247300 931210 647490 776190 709170 695790 635650 935410 716200 1091600 81308 1258000 889980 698010 792940 715720 719870 623830 894940 1 1 1 1 1 1 1 1 1 1 1 237800000 112530000 125270000 4336 1684 4054 24433;24434;24435 29406;29407;29408;29409;29410 29410 5 ELEMIGFIENNVSK Oxidation (M) 1637.7971 0.79707302 1821 Q15645 TRIP13 Pachytene checkpoint protein 2 homolog yes yes 0 0 1 0 By MS/MS 3 0 1 1 67.95 67.66 3 0.037613 23296 20211116_3430_TMUAki_TMT10x_P_F3 45.014 16.381 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4337 1821 4055 24436 29411 29411 2440 1 ELEPEAAEEALENGPK Unmodified 1724.8105 0.81047448 2801 Q9H3P7 ACBD3 Golgi resident protein GCP60 yes yes 0 0 0 0 By MS/MS 1 0 1 1 62.479 62.479 3 2.6779E-05 19087 20211116_3428_TMUAki_TMT10x_P_F1 88.716 75.515 6729600 11519000 23377 11100000 8319800 14762000 9423900 7760800 7286200 7628500 8928600 6266000 10747000 594950 11408000 8006100 14656000 9435100 8240100 7564300 7455800 8562200 2 2 1 2 2 2 2 2 2 2 2 6729600 11519000 23377 11100000 8319800 14762000 9423900 7760800 7286200 7628500 8928600 6266000 10747000 594950 11408000 8006100 14656000 9435100 8240100 7564300 7455800 8562200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 520370000 520370000 0 4338 2801 4056 24437 29412;29413 29412 2 ELEQLFSQYGR Unmodified 1368.6674 0.66737948 815 P26378;P26378-4;P26378-2;P26378-5;P26378-1;P26378-3;Q12926;Q12926-2 ELAVL4;ELAVL2 ELAV-like protein 4;ELAV-like protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 4.58 1.19 1 1 3 4 3 7 5 70.748 70.694 2;3 8.9089E-30 22851 20211116_3431_TMUAki_TMT10x_P_F4 265.67 212.5 54762000 88373000 261840 86937000 67116000 91546000 62999000 59226000 59510000 62489000 63561000 50984000 82456000 4155200 88860000 64214000 92251000 64010000 61946000 60837000 60895000 61190000 14 14 5 14 14 14 14 14 14 14 14 37367000 59644000 134000 57104000 44678000 73867000 44400000 42383000 41652000 43945000 43265000 34788000 55645000 2631200 58685000 42795000 73509000 44966000 44728000 42551000 42854000 41686000 9 9 3 9 9 9 9 9 9 9 9 17395000 28728000 127840 29833000 22438000 17680000 18599000 16843000 17858000 18544000 20296000 16196000 26811000 1524000 30175000 21419000 18742000 19043000 17218000 18286000 18041000 19503000 5 5 2 5 5 5 5 5 5 5 5 11511000000 6366800000 5144500000 4339 815 4057 24438;24439;24440;24441;24442;24443;24444;24445;24446;24447;24448;24449 29414;29415;29416;29417;29418;29419;29420;29421;29422;29423;29424;29425;29426;29427 29418 14 ELEQVCNPIISGLYQGAGGPGPGGFGAQGPK Unmodified 3054.4869 0.48691928 596 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 0 0 By MS/MS By MS/MS 7.36 0.643 1 5 5 5 6 70.337 70.357 3;4;5 7.523E-16 24981 20211116_3447_TMUAki_TMT10x_S_F8 119.28 106.84 40131000 69314000 192250 65599000 56881000 57879000 56388000 38456000 34210000 40788000 50430000 37365000 64664000 2607800 67069000 54514000 59003000 56536000 40149000 36349000 39739000 48146000 15 15 6 15 15 15 15 15 15 15 15 15542000 23346000 33251 23194000 13527000 25324000 17206000 13894000 14264000 15310000 17452000 14470000 21784000 715250 23705000 13058000 25410000 17169000 14746000 14753000 14894000 16736000 7 7 2 7 7 7 7 7 7 7 7 24590000 45969000 159000 42405000 43355000 32554000 39182000 24561000 19945000 25478000 32979000 22894000 42880000 1892500 43364000 41456000 33592000 39367000 25403000 21595000 24845000 31410000 8 8 4 8 8 8 8 8 8 8 8 38312000000 16465000000 21848000000 4340 596 4058 24450;24451;24452;24453;24454;24455;24456;24457;24458;24459;24460 29428;29429;29430;29431;29432;29433;29434;29435;29436;29437;29438;29439;29440;29441;29442;29443 29441 16 ELERMAEVLVTGEQLR Oxidation (M) 1887.9724 0.97241163 2266 Q8TB45;Q8TB45-2 DEPTOR DEP domain-containing mTOR-interacting protein yes no 0 0 1 1 By MS/MS 1 0 1 1 45.716 45.716 2 0.0041925 12284 20211116_3428_TMUAki_TMT10x_P_F1 65.695 35.768 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4341 2266 4059 24461 29444 29444 2648 1 ELESARPQLLAPETALRPNDGAEELQR Unmodified 3002.5421 0.54212597 2527 Q96NU1;Q96NU1-1;Q96NU1-2;Q96NU1-6;Q96NU1-4;Q96NU1-5 SAMD11 Sterile alpha motif domain-containing protein 11 yes no 0 0 0 2 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 53.078 53.052 4 2.6037E-77 18400 20211116_3441_TMUAki_TMT10x_S_F3 247.74 226.73 11741000 20447000 42197 21142000 14829000 17608000 13048000 13754000 14257000 13303000 16189000 10932000 19082000 976750 21466000 14171000 18070000 13366000 14165000 14520000 13011000 15557000 7 7 4 7 7 7 7 7 7 7 7 4587200 7979700 20712 7706100 6845800 10040000 6117100 5352600 5545600 5150400 5877600 4271100 7444800 411080 7915700 6545700 9978400 6225200 5672600 5678500 5038400 5659600 3 3 2 3 3 3 3 3 3 3 3 7154100 12467000 21485 13436000 7982800 7568800 6931300 8401600 8711600 8152300 10311000 6660800 11637000 565670 13550000 7625300 8091200 7140800 8492700 8841400 7972300 9897500 4 4 2 4 4 4 4 4 4 4 4 2308900000 1189700000 1119200000 4342 2527 4060 24462;24463;24464;24465;24466 29445;29446;29447;29448;29449;29450;29451 29448 7 ELESQISELQEDLESER Unmodified 2032.9437 0.9436735 934 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 By matching By MS/MS 1 0 2 1 1 77.659 77.633 3 4.6195E-12 27271 20211116_3439_TMUAki_TMT10x_S_F1 139.88 125.73 2002400 3351500 36523 3047600 2808100 2353300 2691700 2308800 2203300 2363500 2569000 1864700 3126200 211330 3120200 2691900 2439200 2721300 2351300 2275800 2306100 2466900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2002400 3351500 36523 3047600 2808100 2353300 2691700 2308800 2203300 2363500 2569000 1864700 3126200 211330 3120200 2691900 2439200 2721300 2351300 2275800 2306100 2466900 1 1 1 1 1 1 1 1 1 1 1 855260000 492180000 363080000 4343 934 4061 24467;24468 29452 29452 1 ELETVAAHQFPEVR Unmodified 1624.8209 0.82092001 2399 Q969V3;Q969V3-2 NCLN Nicalin yes no 0 0 0 0 By MS/MS By MS/MS 3 0.632 1 3 1 3 2 48.762 48.41 3 7.7506E-24 14189 20211116_3442_TMUAki_TMT10x_S_F4 165.49 139.93 1031900 1775500 0 2072800 1108000 806070 809760 1520700 1503700 1363800 1434000 960790 1657800 82933 2074700 1054700 915360 858450 1505400 1496900 1338400 1385500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1031900 1775500 0 2072800 1108000 806070 809760 1520700 1503700 1363800 1434000 960790 1657800 82933 2074700 1054700 915360 858450 1505400 1496900 1338400 1385500 1 1 0 1 1 1 1 1 1 1 1 124060000 0 124060000 4344 2399 4062 24469;24470;24471;24472;24473 29453;29454;29455;29456;29457 29457 5 ELETVCNDVLSLLDK Unmodified 1746.871 0.87096625 1515 Q04917 YWHAH 14-3-3 protein eta yes yes 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 1 3 81.276 81.254 2;3 1.1632E-32 26975 20211116_3440_TMUAki_TMT10x_S_F2 200.21 170.87 2707900 4397300 55940 4961700 3634900 2909100 3518900 1882800 1635900 2064800 2929900 2521600 4105200 275960 4991200 3484900 3067200 3517200 1971600 1792600 2009100 2786300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2707900 4397300 55940 4961700 3634900 2909100 3518900 1882800 1635900 2064800 2929900 2521600 4105200 275960 4991200 3484900 3067200 3517200 1971600 1792600 2009100 2786300 2 2 1 2 2 2 2 2 2 2 2 2679300000 0 2679300000 4345 1515 4063 24474;24475;24476;24477 29458;29459;29460;29461 29461 4 ELEVAEGGKAELER Unmodified 1528.7733 0.77330111 1851 Q16543 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 4 3 44.256 44.154 3 5.3645E-10 14711 20211116_3441_TMUAki_TMT10x_S_F3 138.81 114.11 33542000 49969000 339610 53716000 43656000 43225000 33191000 28366000 32753000 29982000 37917000 31233000 46641000 3234700 54378000 41616000 44348000 34201000 29639000 33523000 29215000 36417000 8 8 7 8 8 8 8 8 8 8 8 21022000 30411000 170030 32331000 30983000 33055000 21635000 16923000 20682000 19279000 22469000 19575000 28384000 2036600 32858000 29483000 33267000 22405000 18091000 21145000 18732000 21620000 4 4 3 4 4 4 4 4 4 4 4 12520000 19558000 169580 21385000 12672000 10170000 11555000 11443000 12071000 10703000 15447000 11659000 18256000 1198200 21520000 12133000 11080000 11796000 11548000 12378000 10484000 14797000 4 4 4 4 4 4 4 4 4 4 4 1658600000 1157000000 501640000 4346 1851 4064 24478;24479;24480;24481;24482;24483;24484 29462;29463;29464;29465;29466;29467;29468;29469 29468 8 ELEVLLMCNK Oxidation (M) 1263.6203 0.62029463 1382 P62910 RPL32 60S ribosomal protein L32 yes yes 0 0 1 0 By MS/MS By MS/MS 4.29 0.7 1 3 3 2 5 65.493 65.563 2;3 0.0044996 19867 20211116_3444_TMUAki_TMT10x_S_F5 63.283 40.047 2906600 5331600 112220 5689600 3734200 3485100 3229200 3663600 3916200 3774000 4448700 2707100 4976200 357150 5746100 3574600 3690400 3323200 3719200 3972900 3681400 4275000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2906600 5331600 112220 5689600 3734200 3485100 3229200 3663600 3916200 3774000 4448700 2707100 4976200 357150 5746100 3574600 3690400 3323200 3719200 3972900 3681400 4275000 1 1 1 1 1 1 1 1 1 1 1 537190000 355390000 181800000 4347 1382 4065 24485;24486;24487;24488;24489;24490;24491 29470;29471;29472;29473;29474;29475 29473 1853 6 ELEVLLMCNK Unmodified 1247.6254 0.62538001 1382 P62910 RPL32 60S ribosomal protein L32 yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 73.126 73.161 2;3 1.5475E-07 22963 20211116_3444_TMUAki_TMT10x_S_F5 111.65 85.713 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4348 1382 4065 24492;24493;24494 29476;29477;29478 29478 3 ELEVQHPAAK Unmodified 1120.5877 0.58767259 1146 P50990;P50990-2 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 By MS/MS By MS/MS 3 1.41 1 1 1 1 1 4 1 32.423 32.323 3 0.00067865 9913 20211116_3441_TMUAki_TMT10x_S_F3 83.883 64.406 4398300 7853600 124170 7186400 7240200 9287900 6311400 4494600 5203000 4451100 6354300 4096100 7325800 515610 7409900 6926200 9224500 6416100 4810400 5382500 4349000 6094100 4 4 3 4 4 4 4 4 4 4 4 3736300 6815000 124170 6200900 6581800 8643900 5514200 3904100 4538000 3837900 5597900 3479800 6356800 465340 6405900 6291600 8548600 5618900 4206700 4697000 3751000 5367300 3 3 3 3 3 3 3 3 3 3 3 662000 1038600 0 985480 658420 643980 797120 590450 665050 613210 756330 616350 968930 50266 1004000 634510 675900 797210 603710 685590 597960 726780 1 1 0 1 1 1 1 1 1 1 1 617430000 554520000 62906000 4349 1146 4066 24495;24496;24497;24498;24499 29479;29480;29481;29482 29482 4 ELFALHPSPDEEEPIER Unmodified 2006.9585 0.9585357 2525 Q96N67;Q96N67-3;Q96N67-2;Q96N67-4;Q96N67-5;Q96N67-6;Q96N67-7 DOCK7 Dedicator of cytokinesis protein 7 yes no 0 0 0 0 By MS/MS 3 0 1 1 55.596 55.209 3 0.064763 19267 20211116_3441_TMUAki_TMT10x_S_F3 32.366 22.266 1526200 2909700 50271 2501900 1884700 2044500 1455700 2412900 2128200 2433700 2063200 1421400 2713500 178400 2574300 1799400 2119300 1519900 2435300 2133300 2376000 1992300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1526200 2909700 50271 2501900 1884700 2044500 1455700 2412900 2128200 2433700 2063200 1421400 2713500 178400 2574300 1799400 2119300 1519900 2435300 2133300 2376000 1992300 1 1 1 1 1 1 1 1 1 1 1 368100000 0 368100000 4350 2525 4067 24500 29483 29483 1 ELFALKPMNCPGHCLMFDHRPR 2 Oxidation (M) 2757.276 0.27602076 819 P26639;P26639-2 TARS Threonine--tRNA ligase, cytoplasmic yes no 0 0 2 2 By MS/MS By MS/MS 3 0 2 1 1 45.378 45.216 5 0.01013 15188 20211116_3441_TMUAki_TMT10x_S_F3 43.611 37.817 1561500 2591600 16872 2936400 2275600 2379100 1470700 2100800 1998200 1873400 1982900 1453700 2419500 124090 2962900 2160800 2451700 1550200 2143200 2009200 1839000 1913300 2 2 1 2 2 2 2 2 2 2 2 763480 1232300 0 1445000 1495500 1657500 908810 949180 979690 853760 972430 710630 1150700 42464 1462300 1417200 1659500 954720 997950 993310 837760 938290 1 1 0 1 1 1 1 1 1 1 1 797970 1359300 16872 1491300 780120 721590 561890 1151600 1018500 1019600 1010400 743120 1268800 81631 1500600 743550 792250 595500 1145200 1015900 1001200 974990 1 1 1 1 1 1 1 1 1 1 1 248800000 139800000 108990000 4351 819 4068 24501;24502 29484;29485 29485 979;980 2 ELFLLGQHYVFEAK Unmodified 1692.8875 0.88754301 2443 Q96EK5 KIAA1279 KIF1-binding protein yes yes 0 0 0 0 By MS/MS 8 0 1 1 75.343 75.357 3 0.015051 24547 20211116_3436_TMUAki_TMT10x_P_F8 50.305 37.538 5260000 8804600 304320 8565500 6247000 9662100 5967500 5069500 4688500 5717700 6527600 4899800 8214700 733530 8771500 6001300 9672200 6028100 5405500 4891000 5557500 6240000 1 1 1 1 1 1 1 1 1 1 1 5260000 8804600 304320 8565500 6247000 9662100 5967500 5069500 4688500 5717700 6527600 4899800 8214700 733530 8771500 6001300 9672200 6028100 5405500 4891000 5557500 6240000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 351920000 351920000 0 4352 2443 4069 24503 29486 29486 1 ELFPPLFMAAFDGR Unmodified 1609.7963 0.79628516 1430 P78395 PRAME Melanoma antigen preferentially expressed in tumors yes yes 0 0 0 0 By MS/MS By MS/MS 7.6 0.49 2 3 3 2 81.826 81.838 2;3 2.4438E-06 26539 20211116_3447_TMUAki_TMT10x_S_F8 116.13 82.338 2034400 3352800 6678.4 3337100 2522700 2594000 2243600 1551000 1772600 2000300 2472700 1894300 3128400 146550 3394400 2412100 2665000 2275800 1643000 1848800 1935100 2363600 3 3 1 3 3 3 3 3 3 3 3 1258600 2087800 6678.4 2073900 1528200 1908900 1212400 1153900 1343300 1526900 1576200 1172000 1948100 81930 2114300 1457800 1937900 1250300 1222500 1369100 1475900 1513300 2 2 1 2 2 2 2 2 2 2 2 775800 1265000 0 1263100 994480 685050 1031200 397010 429360 473370 896520 722330 1180300 64617 1280100 954300 727070 1025500 420480 479710 459180 850380 1 1 0 1 1 1 1 1 1 1 1 316950000 188430000 128520000 4353 1430 4070 24504;24505;24506;24507;24508 29487;29488;29489 29489 3 ELFQTPGHTEEAVAAGK Unmodified 1783.8741 0.87407779 1039 P46013;P46013-2 MKI67 Antigen KI-67 yes no 0 0 0 0 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 46.868 46.936 3 4.0423E-22 12397 20211116_3444_TMUAki_TMT10x_S_F5 153.95 122.13 2962400 4521000 554.17 5811200 6349600 6866500 3941600 3692800 4129900 3259100 3829500 2758300 4223400 288670 5853000 6027500 6858700 4129900 3901700 4182600 3200800 3703500 2 2 1 2 2 2 2 2 2 2 2 2962400 4521000 554.17 5811200 6349600 6866500 3941600 3692800 4129900 3259100 3829500 2758300 4223400 288670 5853000 6027500 6858700 4129900 3901700 4182600 3200800 3703500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 725530000 725530000 0 4354 1039 4071 24509;24510;24511;24512 29490;29491;29492;29493 29493 4 ELFQTPGHTEELVAAGK Unmodified 1825.921 0.92102798 1039 P46013;P46013-2 MKI67 Antigen KI-67 yes no 0 0 0 0 By MS/MS 5 0 1 1 54.582 54.755 3 3.4005E-05 15461 20211116_3444_TMUAki_TMT10x_S_F5 84.14 71.994 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4355 1039 4072 24513 29494 29494 1 ELFSPLHALNFGIGGDTTR Unmodified 2044.0378 0.037789075 1420 P68402;P68402-4;P68402-3;P68402-2 PAFAH1B2 Platelet-activating factor acetylhydrolase IB subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 76.719 76.675 3 6.2623E-41 24912 20211116_3428_TMUAki_TMT10x_P_F1 187.42 170.02 7369100 12536000 6976 10837000 8471600 11930000 9192000 8714100 8403000 9381000 10019000 6861100 11691000 586160 11192000 8138500 12014000 9261800 9042100 8640500 9134500 9615400 3 3 1 3 3 3 3 3 3 3 3 3099600 4869700 0 4448400 2928900 6231000 3793200 3599800 3639500 3693100 4074800 2885900 4542400 239510 4594500 2829100 6178700 3797700 3795600 3724800 3603000 3917400 1 1 0 1 1 1 1 1 1 1 1 4269600 7666700 6976 6388600 5542700 5698800 5398800 5114300 4763400 5687900 5944600 3975200 7149100 346650 6597400 5309300 5835000 5464100 5246500 4915700 5531400 5698000 2 2 1 2 2 2 2 2 2 2 2 4035000000 2106000000 1929000000 4356 1420 4073 24514;24515;24516;24517 29495;29496;29497;29498 29495 4 ELFSQFGK Unmodified 954.48108 0.48108226 1619 Q13310;Q13310-2;Q13310-3 PABPC4 Polyadenylate-binding protein 4 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 60.588 61.191 2 0.00043998 20392 20211116_3446_TMUAki_TMT10x_S_F7 149.65 105.21 28962000 45308000 480960 53233000 37752000 37721000 27628000 30133000 33039000 29691000 36527000 26970000 42306000 2972500 53515000 35973000 39214000 28721000 31007000 33499000 29016000 35129000 3 3 3 3 3 3 3 3 3 3 3 11109000 16461000 299900 19572000 21633000 23074000 13356000 11354000 12329000 10975000 13404000 10346000 15372000 1347900 19800000 20553000 23027000 13949000 12124000 12625000 10735000 12897000 1 1 1 1 1 1 1 1 1 1 1 17853000 28847000 181060 33660000 16119000 14647000 14272000 18779000 20711000 18716000 23123000 16624000 26935000 1624600 33715000 15420000 16187000 14772000 18883000 20874000 18281000 22231000 2 2 2 2 2 2 2 2 2 2 2 1116200000 578600000 537610000 4357 1619 4074 24518;24519;24520;24521 29499;29500;29501;29502;29503 29502 5 ELFVMAR Oxidation (M) 880.44767 0.44767364 1337 P62195;P62195-2 PSMC5 26S protease regulatory subunit 8 yes no 0 0 1 0 By MS/MS 5 0 1 1 42.428 42.553 2 0.08301 10532 20211116_3444_TMUAki_TMT10x_S_F5 65.672 42.743 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4358 1337 4075 24522 29504 29504 1792 1 ELFVQSEIFPLETPAFAIK Unmodified 2178.1613 0.16125825 1128 P49915 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 0 0 0 0 By MS/MS 7 0 1 1 81.218 81.252 3 0.090511 28777 20211116_3446_TMUAki_TMT10x_S_F7 26.438 15.651 4776000 8577500 336810 8438300 5885300 5228000 6683300 2754700 3244000 3685900 5226700 4449400 8003200 725390 8570300 5683600 5468400 6631000 2953500 3521100 3561500 4980600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4776000 8577500 336810 8438300 5885300 5228000 6683300 2754700 3244000 3685900 5226700 4449400 8003200 725390 8570300 5683600 5468400 6631000 2953500 3521100 3561500 4980600 1 1 1 1 1 1 1 1 1 1 1 358400000 0 358400000 4359 1128 4076 24523 29505 29505 1 ELGAFGLQVPSELGGVGLCNTQYAR Unmodified 2635.3064 0.30643572 1115 P49748;P49748-2;P49748-3 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS 8 0 1 1 78.781 78.786 3 2.0831E-05 25922 20211116_3436_TMUAki_TMT10x_P_F8 68.361 44.914 1694900 2360700 0 2105800 1354000 3147200 1587700 1837300 2065400 1950200 1911200 1577600 2201800 71689 2181800 1300000 3112400 1613100 1937500 2074800 1900000 1848400 1 1 0 1 1 1 1 1 1 1 1 1694900 2360700 0 2105800 1354000 3147200 1587700 1837300 2065400 1950200 1911200 1577600 2201800 71689 2181800 1300000 3112400 1613100 1937500 2074800 1900000 1848400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 739320000 739320000 0 4360 1115 4077 24524 29506 29506 1 ELGELIPLR Unmodified 1038.6073 0.6073454 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 66.602 66.294 2 3.152E-05 21052 20211116_3431_TMUAki_TMT10x_P_F4 112.84 79.045 12817000 22634000 116140 22035000 17778000 21880000 13234000 20277000 16537000 17664000 17376000 11934000 21117000 1237800 22519000 16939000 22264000 13764000 20619000 16709000 17359000 16736000 4 4 3 4 4 4 4 4 4 4 4 5393800 9674300 68546 9191600 8887400 13670000 5508200 7793600 7482000 7174900 7574300 5022700 9025400 560000 9478000 8440800 13518000 5825000 8202100 7528500 7032900 7303800 2 2 2 2 2 2 2 2 2 2 2 7422700 12959000 47596 12843000 8890800 8210600 7725700 12483000 9055000 10489000 9801200 6911600 12092000 677820 13041000 8498400 8746200 7938600 12417000 9180300 10326000 9431700 2 2 1 2 2 2 2 2 2 2 2 1144400000 208020000 936360000 4361 1741 4078 24525;24526;24527;24528;24529;24530 29507;29508;29509;29510;29511;29512;29513 29509 7 ELGENLTDEELQEMIDEADRDGDGEVSEQEFLR Oxidation (M) 3825.6647 0.66468104 994 P41208 CETN2 Centrin-2 yes yes 0 0 1 1 By MS/MS 1 0 1 1 76.281 76.281 3 6.5513E-24 24749 20211116_3428_TMUAki_TMT10x_P_F1 138.08 136.2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4362 994 4079 24531 29514 29514 1280 1 ELGEYGLQAYTEVK Unmodified 1598.7828 0.78280317 500 P05091;P05091-2 ALDH2 Aldehyde dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 66.2 65.992 3 4.1834E-14 21369 20211116_3442_TMUAki_TMT10x_S_F4 149.57 135.66 13159000 22839000 97388 23127000 16159000 17476000 15525000 13925000 12842000 13682000 16429000 12253000 21312000 1151500 23489000 15479000 18073000 15698000 14330000 13309000 13372000 15738000 4 4 2 4 4 4 4 4 4 4 4 3870000 6577300 0 6926800 4845300 7419700 5194400 3998200 3840100 3652300 4560000 3603200 6138700 314520 7049100 4653400 7451400 5208700 4227400 3991500 3581300 4376500 1 1 0 1 1 1 1 1 1 1 1 9289200 16261000 97388 16201000 11314000 10057000 10331000 9926700 9001600 10029000 11869000 8649500 15173000 836990 16440000 10826000 10621000 10489000 10102000 9317500 9790800 11361000 3 3 2 3 3 3 3 3 3 3 3 2039500000 1196700000 842790000 4363 500 4080 24532;24533;24534;24535;24536;24537 29515;29516;29517;29518;29519;29520 29518 6 ELGGESNFGDALLDAGESMK Oxidation (M) 2054.9103 0.91026488 2616 Q99961 SH3GL1 Endophilin-A2 yes yes 0 0 1 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 71.789 71.591 3 1.6476E-09 24385 20211116_3429_TMUAki_TMT10x_P_F2 116.73 98.811 12537000 20303000 117740 19233000 14413000 19878000 14716000 15012000 16299000 15774000 16447000 11674000 18941000 1160500 19706000 13834000 20102000 14960000 15532000 16517000 15374000 15861000 5 5 4 5 5 5 5 5 5 5 5 5696700 8444200 33597 7787200 5331100 11352000 6507600 6064400 7280400 6855300 6875400 5304400 7876900 483520 8043900 5142400 11226000 6563400 6456400 7358400 6662600 6645000 2 2 1 2 2 2 2 2 2 2 2 6840500 11859000 84146 11446000 9082200 8525800 8208000 8948100 9018400 8918700 9571600 6369800 11064000 676950 11662000 8691600 8875100 8396500 9075700 9158800 8711700 9216200 3 3 3 3 3 3 3 3 3 3 3 1037800000 605210000 432640000 4364 2616 4081 24538;24539;24540;24541 29521;29522;29523;29524;29525;29526;29527 29522 2861 7 ELGGLEGDPSPEEDEGIQK Unmodified 1997.9066 0.90655971 2654 Q9BT09 CNPY3 Protein canopy homolog 3 yes yes 0 0 0 0 By MS/MS By matching 1 0 2 1 1 55.782 55.632 3 2.0586E-08 16358 20211116_3428_TMUAki_TMT10x_P_F1 105.9 91.643 1668100 2815100 1409.4 2957500 3396600 4164300 2593800 2242000 2270600 1886400 2392700 1553200 2627300 163820 3025100 3236700 4124700 2662900 2365900 2328400 1857000 2304400 1 1 1 1 1 1 1 1 1 1 1 1668100 2815100 1409.4 2957500 3396600 4164300 2593800 2242000 2270600 1886400 2392700 1553200 2627300 163820 3025100 3236700 4124700 2662900 2365900 2328400 1857000 2304400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 299040000 198890000 100150000 4365 2654 4082 24542;24543 29528 29528 1 ELGIQVHSVTR Unmodified 1237.6779 0.67788459 2476 Q96GQ7 DDX27 Probable ATP-dependent RNA helicase DDX27 yes yes 0 0 0 0 By MS/MS By MS/MS 4.25 0.829 1 1 2 2 2 35.625 35.606 3 1.1355E-14 7607 20211116_3444_TMUAki_TMT10x_S_F5 183.08 158.97 5370800 7890800 7163.7 9526400 10695000 8679900 6199200 5263300 5564000 5320600 6989700 5000200 7369100 454910 9590400 10138000 8817900 6503600 5525500 5738800 5194000 6698600 4 4 2 4 4 4 4 4 4 4 4 4083100 5994500 1236.6 7303700 9456400 7593800 4832000 4001700 4221200 4020200 5274300 3801200 5598400 346680 7362800 8946600 7637400 5124200 4250500 4358500 3925600 5055300 2 2 1 2 2 2 2 2 2 2 2 1287700 1896300 5927.1 2222800 1239100 1086100 1367200 1261600 1342800 1300300 1715400 1199000 1770600 108230 2227500 1191400 1180500 1379400 1275000 1380400 1268400 1643300 2 2 1 2 2 2 2 2 2 2 2 386130000 261890000 124240000 4366 2476 4083 24544;24545;24546;24547 29529;29530;29531;29532 29532 4 ELGITALHIK Unmodified 1093.6495 0.64954457 1343 P62263 RPS14 40S ribosomal protein S14 yes yes 0 0 0 0 By MS/MS By MS/MS 6.22 1.31 1 2 2 2 2 5 4 53.803 54.026 3 5.8333E-07 15036 20211116_3434_TMUAki_TMT10x_P_F6 154.24 115.67 36986000 59034000 268900 59854000 57367000 51288000 29446000 44478000 38027000 39004000 47506000 34438000 55086000 3376500 60451000 54300000 52596000 31369000 45402000 38636000 38318000 45534000 11 11 7 10 11 11 10 11 11 11 11 13260000 20616000 58746 16001000 36437000 33473000 11197000 15379000 12219000 13637000 16637000 12345000 19218000 1273200 16487000 34287000 32588000 12484000 16498000 12532000 13390000 15912000 4 4 2 3 4 4 3 4 4 4 4 23726000 38418000 210160 43853000 20930000 17814000 18249000 29099000 25808000 25367000 30869000 22093000 35868000 2103300 43964000 20013000 20008000 18885000 28904000 26104000 24928000 29622000 7 7 5 7 7 7 7 7 7 7 7 18114000000 10156000000 7958500000 4367 1343 4084 24548;24549;24550;24551;24552;24553;24554;24555;24556 29533;29534;29535;29536;29537;29538;29539;29540;29541;29542;29543 29534 11 ELGIWEPLAVK Unmodified 1253.702 0.70197407 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 By MS/MS By MS/MS 5.75 0.968 1 2 3 2 4 4 77.22 77.234 2;3 3.8278E-23 24996 20211116_3445_TMUAki_TMT10x_S_F6 240.13 198.68 41129000 65926000 0 83474000 25163000 40790000 49632000 15839000 14190000 18569000 39686000 38294000 61581000 2209700 83280000 24382000 42483000 47968000 17445000 16892000 17915000 37494000 6 6 0 6 5 5 6 6 6 5 6 22166000 34768000 0 38408000 21317000 28566000 26451000 8344100 7977600 11839000 21850000 20637000 32456000 1687500 38778000 20560000 29254000 25990000 9608800 9416500 11419000 20649000 3 3 0 3 3 3 3 3 3 3 3 18964000 31158000 0 45066000 3846300 12224000 23181000 7495200 6212700 6729500 17835000 17657000 29125000 522230 44502000 3822400 13229000 21977000 7836300 7475300 6495900 16845000 3 3 0 3 2 2 3 3 3 2 3 8949900000 3453500000 5496400000 4368 1094 4085 24557;24558;24559;24560;24561;24562;24563;24564 29544;29545;29546;29547;29548;29549;29550 29549 7 ELGLDEGVDSLK Unmodified 1273.6402 0.64016167 2326 Q8WXX5 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 0 0 0 0 By MS/MS By matching 3 0.707 1 2 1 2 2 61.044 60.771 2 5.8518E-12 20013 20211116_3429_TMUAki_TMT10x_P_F2 173.71 113.12 6411100 9924500 62367 11205000 11684000 16019000 9851000 8037000 8733400 8176600 9143800 5969300 9265400 601140 11413000 11157000 15843000 10054000 8578500 8948200 7980000 8808000 2 2 1 2 2 2 2 2 2 2 2 6411100 9924500 62367 11205000 11684000 16019000 9851000 8037000 8733400 8176600 9143800 5969300 9265400 601140 11413000 11157000 15843000 10054000 8578500 8948200 7980000 8808000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1461600000 882320000 579290000 4369 2326 4086 24565;24566;24567;24568 29551;29552 29551 2 ELGLNPEK Unmodified 898.476 0.47599688 2706 Q9BWD1;Q9BWD1-2 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 43.316 43.294 2 0.0070265 13218 20211116_3430_TMUAki_TMT10x_P_F3 90.629 41.833 1681800 2858100 8173.9 3377400 2506400 2107300 2082000 2212200 2468800 2105100 2805500 1565900 2668800 156170 3389800 2392900 2227500 2146000 2240700 2506600 2060400 2695900 2 2 1 2 2 2 2 2 2 2 2 516230 798630 8173.9 917730 1249500 1070200 713980 540580 617570 564340 723340 480720 745650 60687 930100 1185100 1069000 749240 577060 636250 550180 694510 1 1 1 1 1 1 1 1 1 1 1 1165600 2059500 0 2459700 1256900 1037100 1368000 1671600 1851200 1540800 2082200 1085200 1923200 95486 2459700 1207800 1158600 1396700 1663700 1870300 1510200 2001400 1 1 0 1 1 1 1 1 1 1 1 145990000 34823000 111160000 4370 2706 4087 24569;24570;24571 29553;29554 29553 2 ELGLPEELVSR Unmodified 1240.6663 0.66631685 1128 P49915;P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 0 0 By MS/MS By MS/MS 2.71 1.03 1 2 2 2 4 3 62.2 61.993 2 6.1456E-20 19308 20211116_3431_TMUAki_TMT10x_P_F4 237.51 191.17 61923000 102670000 1081400 105640000 70557000 93005000 67326000 68534000 66344000 63835000 79266000 57664000 95815000 6108900 107370000 67627000 94976000 68430000 70775000 67995000 62538000 76065000 10 10 7 10 10 10 10 10 10 10 10 34130000 54430000 750530 57970000 41593000 66977000 40058000 36349000 36365000 33968000 43266000 31783000 50803000 3512900 59023000 39880000 66988000 40599000 38431000 37401000 33273000 41523000 5 5 4 5 5 5 5 5 5 5 5 27794000 48242000 330920 47668000 28964000 26028000 27267000 32185000 29979000 29867000 36000000 25881000 45013000 2596000 48346000 27747000 27989000 27831000 32343000 30593000 29266000 34542000 5 5 3 5 5 5 5 5 5 5 5 6920700000 4185700000 2735000000 4371 1128 4088 24572;24573;24574;24575;24576;24577;24578 29555;29556;29557;29558;29559;29560;29561;29562;29563;29564;29565 29559 11 ELGLREENEGVYNGSWGGR Unmodified 2120.9875 0.98754442 1098 P49419-2;P49419;P49419-4 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 48.282 48.206 3 7.6891E-64 15248 20211116_3430_TMUAki_TMT10x_P_F3 270.08 252.94 6804700 11060000 96330 13372000 8581000 8260000 8116500 5643000 6415300 5860400 8835300 6336600 10329000 678690 13402000 8222000 8671300 8204500 5876000 6686800 5714600 8448200 5 5 4 5 5 5 5 5 5 5 5 2316900 3973900 64447 4543300 5180800 4895300 4062800 1938000 2058100 2056700 3010600 2157700 3710200 292260 4600000 4943400 4898900 4117400 2123300 2215300 2003800 2874700 2 2 2 2 2 2 2 2 2 2 2 4487800 7085900 31883 8828600 3400200 3364700 4053700 3705000 4357200 3803700 5824700 4178800 6618400 386430 8801800 3278600 3772400 4087100 3752700 4471500 3710800 5573500 3 3 2 3 3 3 3 3 3 3 3 564420000 172500000 391930000 4372 1098 4089 24579;24580;24581;24582 29566;29567;29568;29569;29570;29571 29566 6 ELGLVDGQELAVADVTTPQTVLFK Unmodified 2542.353 0.35303478 2268 Q8TBC4;Q8TBC4-2 UBA3 NEDD8-activating enzyme E1 catalytic subunit yes no 0 0 0 0 By MS/MS 4 0 1 1 79.931 79.941 3 6.4663E-06 26675 20211116_3431_TMUAki_TMT10x_P_F4 79.762 65.747 2053200 2774900 0 3274400 1423600 2779300 1922800 1440300 1303700 1497200 2250800 1911500 2591100 133960 3297800 1375800 2831800 1905100 1533700 1387000 1459900 2142000 1 1 0 1 1 1 1 1 1 1 1 2053200 2774900 0 3274400 1423600 2779300 1922800 1440300 1303700 1497200 2250800 1911500 2591100 133960 3297800 1375800 2831800 1905100 1533700 1387000 1459900 2142000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 985430000 985430000 0 4373 2268 4090 24583 29572 29572 1 ELGNDAYK Unmodified 908.42396 0.42396131 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 By MS/MS 2 0 1 1 35.877 35.976 2 0.002486 8564 20211116_3440_TMUAki_TMT10x_S_F2 108.98 70.171 311680 510390 4683.1 544000 373510 277050 368490 224450 266040 233560 380610 290230 476370 29322 548600 358190 297520 370870 231130 279200 227730 363610 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 311680 510390 4683.1 544000 373510 277050 368490 224450 266040 233560 380610 290230 476370 29322 548600 358190 297520 370870 231130 279200 227730 363610 2 2 1 2 2 2 2 2 2 2 2 6016700 0 6016700 4374 897 4091 24584 29573;29574 29574 2 ELGPDGEEAEGPGAGDGPPR Unmodified 1905.8341 0.83406347 720 P18615;P18615-3 NELFE Negative elongation factor E yes no 0 0 0 0 By MS/MS By MS/MS 1.25 0.433 3 1 3 1 39.142 39.086 2;3 6.7421E-101 9689 20211116_3428_TMUAki_TMT10x_P_F1 318.95 295.71 1413100 2610700 568.28 3442600 2725700 2324900 1502000 1452700 1699400 1426800 2007300 1315700 2439100 130540 3436600 2582500 2417800 1593600 1520300 1731200 1394600 1926900 2 2 1 2 2 2 2 2 2 2 2 710670 1333700 568.28 1707700 2112500 1974300 1105500 768290 966880 830730 1061600 661700 1245900 79082 1719700 2000200 1967700 1169700 843880 993060 808760 1021200 1 1 1 1 1 1 1 1 1 1 1 702400 1277000 0 1734900 613280 350660 396530 684430 732540 596090 945720 653960 1193300 51454 1716900 582230 450110 423950 676390 738090 585810 905710 1 1 0 1 1 1 1 1 1 1 1 211910000 147750000 64152000 4375 720 4092 24585;24586;24587;24588 29575;29576;29577;29578 29576 4 ELGSLPQEAFEK Unmodified 1346.6718 0.67179615 3219 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 3.8 0.4 1 4 3 2 61.449 61.444 2;3 5.3364E-16 20727 20211116_3430_TMUAki_TMT10x_P_F3 180.2 139.2 9783000 16373000 181730 17439000 10864000 11563000 10128000 9796200 8747100 9136600 12460000 9110100 15282000 970000 17628000 10408000 12102000 10269000 10030000 9090800 8950500 11905000 3 3 2 3 3 3 3 3 3 3 3 4416200 6667600 158100 7282400 5941700 7185800 5349500 3826600 3324300 3443000 5443600 4113100 6223800 534840 7384400 5691900 7250900 5394500 4048700 3545700 3378400 5185600 1 1 1 1 1 1 1 1 1 1 1 5366800 9705600 23631 10157000 4922700 4377300 4778500 5969600 5422800 5693600 7016700 4997000 9058000 435160 10243000 4716300 4851600 4874600 5980900 5545100 5572000 6719400 2 2 1 2 2 2 2 2 2 2 2 1193800000 720830000 472990000 4376 3219 4093 24589;24590;24591;24592;24593 29579;29580;29581;29582 29579 4 ELGSSVALYSR Unmodified 1180.6088 0.60880197 1578 Q12931;Q12931-2 TRAP1 Heat shock protein 75 kDa, mitochondrial yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 46.332 46.473 2 1.1949E-06 13215 20211116_3433_TMUAki_TMT10x_P_F5 134.57 107.96 16050000 26266000 462560 30910000 38427000 39077000 24366000 24266000 24490000 20180000 23772000 14947000 24526000 2075100 31327000 36520000 38973000 25454000 25297000 24883000 19877000 22955000 4 4 4 4 4 4 4 4 4 4 4 16050000 26266000 462560 30910000 38427000 39077000 24366000 24266000 24490000 20180000 23772000 14947000 24526000 2075100 31327000 36520000 38973000 25454000 25297000 24883000 19877000 22955000 4 4 4 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 628590000 628590000 0 4377 1578 4094 24594;24595 29583;29584;29585;29586 29584 4 ELGTVMR Unmodified 804.41637 0.41637351 599 P0DP25;P0DP24;P0DP23;P27482;P02585 CALML3;TNNC2 Calmodulin-like protein 3;Troponin C, skeletal muscle yes no 0 0 0 0 By MS/MS By MS/MS 3.33 1.11 2 1 2 1 2 4 35.882 35.826 2 0.0016421 8994 20211116_3431_TMUAki_TMT10x_P_F4 134.06 79.531 7752000 12066000 16846 13350000 10463000 7950400 9176500 3720100 3357300 3940100 8427200 7217700 11264000 656610 13448000 9998800 8337400 9195300 4002400 3850100 3839100 7972500 8 8 4 8 8 8 8 8 8 8 8 4257900 6464100 0 6901300 7342400 5900300 5166300 2114200 2046900 2267500 4604300 3964300 6033300 361780 6994600 6983300 5987500 5257600 2345200 2309600 2208300 4362400 2 2 0 2 2 2 2 2 2 2 2 3494100 5602400 16846 6448900 3121000 2050100 4010200 1605900 1310400 1672600 3823000 3253400 5230800 294820 6453400 3015600 2349900 3937700 1657200 1540400 1630800 3610100 6 6 4 6 6 6 6 6 6 6 6 657630000 432900000 224720000 4378 599 4095 24596;24597;24598;24599;24600;24601 29587;29588;29589;29590;29591;29592;29593;29594;29595 29588 9 ELGTVMR Oxidation (M) 820.41129 0.41128813 599 P0DP25;P0DP24;P0DP23;P27482;P02585 CALML3;TNNC2 Calmodulin-like protein 3;Troponin C, skeletal muscle yes no 0 0 1 0 By MS/MS 2.5 0.5 1 1 2 31.131 31.029 2 0.10488 9271 20211116_3441_TMUAki_TMT10x_S_F3 60.648 38.195 510340 891400 0 783880 544470 452890 675240 378200 381280 414140 661230 475170 831370 42687 802330 525350 480110 668980 389380 410690 402990 629200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 510340 891400 0 783880 544470 452890 675240 378200 381280 414140 661230 475170 831370 42687 802330 525350 480110 668980 389380 410690 402990 629200 1 1 0 1 1 1 1 1 1 1 1 154140000 0 154140000 4379 599 4095 24602;24603 29596 29596 579 1 ELHGQNPVVTPCNK Unmodified 1591.7777 0.77767498 1856 Q16630;Q16630-2;Q16630-3 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes no 0 0 0 0 By MS/MS 5 0 1 1 23.976 24.058 3 0.0012831 4208 20211116_3444_TMUAki_TMT10x_S_F5 67.095 53.012 112490 191770 4079 214080 117650 91533 109040 112810 111590 91087 146230 104770 179030 13200 214990 112840 101290 111130 112970 114650 89856 139990 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 112490 191770 4079 214080 117650 91533 109040 112810 111590 91087 146230 104770 179030 13200 214990 112840 101290 111130 112970 114650 89856 139990 1 1 1 1 1 1 1 1 1 1 1 13213000 0 13213000 4380 1856 4096 24604 29597 29597 1 ELHINLIPNK Unmodified 1189.6819 0.68190733 544 P07900;P07900-2;Q14568 HSP90AA1;HSP90AA2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2 yes no 0 0 0 0 By MS/MS By MS/MS 7 0.707 1 2 1 3 1 53.578 54.189 3 0.0017234 15921 20211116_3436_TMUAki_TMT10x_P_F8 70.977 43.496 7784900 12063000 0 15888000 9786600 9707400 7857200 7775200 9113000 8047100 9912600 7248100 11271000 632360 15846000 9332700 10227000 8109600 8011000 9244400 7848000 9537500 2 2 0 2 2 2 2 2 2 2 2 3273900 4631500 0 6006000 5837200 6115000 3446900 3366600 3741400 3184400 3998300 3048100 4326800 279810 6031600 5535100 6161100 3630400 3556100 3802400 3117600 3849100 1 1 0 1 1 1 1 1 1 1 1 4510900 7431900 0 9882500 3949500 3592400 4410300 4408700 5371700 4862700 5914300 4200000 6943900 352560 9814600 3797600 4066100 4479200 4454800 5441900 4730500 5688500 1 1 0 1 1 1 1 1 1 1 1 1567100000 809930000 757200000 4381 544 4097 24605;24606;24607;24608 29598;29599;29600;29601 29600 4 ELHINLIPNKQDR Unmodified 1588.8685 0.8685389 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 1 By MS/MS By MS/MS 6.33 1.49 1 1 2 3 4 4 9 6 46.095 46.291 3;4 5.172E-09 12131 20211116_3447_TMUAki_TMT10x_S_F8 123.29 96.02 71951000 113010000 819890 125970000 108000000 106470000 78815000 91609000 97251000 87232000 99250000 66997000 105500000 6961800 127310000 102860000 109330000 82043000 93761000 98201000 85376000 95681000 22 22 11 22 22 22 22 22 22 22 22 31394000 46257000 298390 51812000 66316000 67933000 37642000 37520000 39915000 34901000 40110000 29232000 43183000 3189600 52705000 62873000 67528000 39752000 39604000 40514000 34194000 38687000 12 12 6 12 12 12 12 12 12 12 12 40557000 66750000 521490 74163000 41686000 38536000 41173000 54089000 57337000 52332000 59139000 37766000 62312000 3772200 74602000 39983000 41805000 42291000 54156000 57687000 51182000 56994000 10 10 5 10 10 10 10 10 10 10 10 46338000000 27236000000 19102000000 4382 544 4098 24609;24610;24611;24612;24613;24614;24615;24616;24617;24618;24619;24620;24621;24622;24623 29602;29603;29604;29605;29606;29607;29608;29609;29610;29611;29612;29613;29614;29615;29616;29617;29618;29619;29620;29621;29622;29623 29623 22 ELHIQGNR Unmodified 965.50428 0.50427732 1801 Q15404;Q15404-2 RSU1 Ras suppressor protein 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 28.441 28.167 3 0.042329 8368 20211116_3441_TMUAki_TMT10x_S_F3 45.382 31.175 128990 219980 2919.7 189460 154840 137040 176380 121750 142760 122870 161280 120120 205150 13777 194650 149190 142500 176740 124590 147360 119960 155010 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 128990 219980 2919.7 189460 154840 137040 176380 121750 142760 122870 161280 120120 205150 13777 194650 149190 142500 176740 124590 147360 119960 155010 1 1 1 1 1 1 1 1 1 1 1 6120400 0 6120400 4383 1801 4099 24624 29624 29624 1 ELHRAPEGQLPAFNEDGLR Unmodified 2148.0712 0.071214468 1727 Q14691 GINS1 DNA replication complex GINS protein PSF1 yes yes 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 42.932 43.083 4 5.8535E-09 11931 20211116_3442_TMUAki_TMT10x_S_F4 118.96 104.27 2103000 3570100 10157 4029500 3432100 3851100 2659400 2690100 2803600 2387700 3107300 1958200 3333000 200320 4075700 3271900 3908100 2742400 2784700 2856700 2344400 2988100 2 2 1 2 2 2 2 2 2 2 2 1517600 2425500 0 2740200 2654900 3218400 1992800 1900700 1910700 1585900 2159300 1413000 2264400 139630 2780300 2528900 3219600 2053500 1989500 1956200 1561900 2075300 1 1 0 1 1 1 1 1 1 1 1 585450 1144700 10157 1289400 777180 632690 666620 789480 892970 801780 948080 545190 1068600 60689 1295300 743030 688570 688970 795150 900500 782560 912870 1 1 1 1 1 1 1 1 1 1 1 457040000 364730000 92317000 4384 1727 4100 24625;24626 29625;29626 29626 2 ELIATVR Unmodified 800.4756 0.47560295 1700 Q14254 FLOT2 Flotillin-2 yes yes 0 0 0 0 By MS/MS By MS/MS 3.75 0.433 1 3 2 2 37.955 38.05 2 0.056323 10052 20211116_3442_TMUAki_TMT10x_S_F4 65.676 16.889 3382000 5130500 0 5747000 5545500 5285500 3985200 3693300 3629600 3247700 4317100 3148500 4789600 253170 5812500 5274300 5377200 4112900 3822100 3732400 3190200 4143300 4 4 0 4 4 4 4 4 4 4 4 2141900 3179400 0 3681300 4174000 4123100 2568900 2533600 2442600 2142400 2755800 1993900 2968600 157880 3726700 3958700 4137300 2685800 2644500 2501600 2108500 2648700 2 2 0 2 2 2 2 2 2 2 2 1240100 1951100 0 2065700 1371500 1162400 1416300 1159700 1187000 1105200 1561300 1154600 1821000 95287 2085800 1315600 1239900 1427200 1177600 1230900 1081700 1494600 2 2 0 2 2 2 2 2 2 2 2 126190000 42555000 83631000 4385 1700 4101 24627;24628;24629;24630 29627;29628 29628 2 ELIEIISGAAAL Unmodified 1198.6809 0.68090428 950 P36542-2 ATP5C1 ATP synthase subunit gamma, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3.62 1.32 2 2 2 1 1 3 5 83.655 83.648 2 1.4914E-08 29225 20211116_3429_TMUAki_TMT10x_P_F2 141.39 97.581 6454900 11715000 488740 11645000 6936700 10794000 7436400 7472200 6255100 7563700 8820700 6013500 10931000 963900 11872000 6691300 10974000 7480400 7767600 6506200 7383300 8429600 7 7 6 7 7 7 7 7 7 7 7 3750400 6845400 264850 6645800 3451600 7177300 3796000 4011700 3499000 4329700 5130200 3493700 6386800 520090 6801900 3332100 7207900 3823300 4248100 3630500 4215500 4898500 3 3 2 3 3 3 3 3 3 3 3 2704500 4869200 223890 4998900 3485100 3617000 3640400 3460500 2756100 3234000 3690500 2519800 4544000 443810 5069900 3359200 3766500 3657100 3519500 2875700 3167800 3531200 4 4 4 4 4 4 4 4 4 4 4 1060800000 515800000 545030000 4386 950 4102 24631;24632;24633;24634;24635;24636;24637;24638 29629;29630;29631;29632;29633;29634;29635;29636 29629 8 ELIEIISGAAALD Unmodified 1313.7078 0.70784731 949 P36542 ATP5C1 ATP synthase subunit gamma, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 83.441 83.429 2 5.4693E-15 30584 20211116_3441_TMUAki_TMT10x_S_F3 176.79 139.15 8755800 12491000 291.51 12485000 9502700 13617000 9505600 8809300 9600400 9493900 10963000 8152000 11655000 375850 12754000 9107600 13694000 9644700 9219800 9811000 9244000 10533000 9 9 1 9 9 9 9 9 9 9 9 5340300 7101600 291.51 7428200 5169900 9781500 5141100 5100100 6115400 6042500 6484700 4972000 6627800 109420 7590100 4954200 9714400 5246500 5449900 6191800 5862600 6244200 5 5 1 5 5 5 5 5 5 5 5 3415500 5389400 0 5057000 4332800 3835400 4364500 3709100 3485000 3451300 4478000 3180000 5027700 266430 5164200 4153400 3979800 4398200 3769800 3619100 3381400 4289000 4 4 0 4 4 4 4 4 4 4 4 2816900000 1800600000 1016300000 4387 949 4103 24639;24640;24641;24642;24643;24644;24645;24646 29637;29638;29639;29640;29641;29642;29643;29644;29645 29644 9 ELIEQLR Unmodified 899.50763 0.50763136 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3 1.22 1 2 2 2 1 4 4 46.512 46.489 2 0.001541 12949 20211116_3431_TMUAki_TMT10x_P_F4 151.29 20.527 35353000 52730000 48294 62553000 73326000 62949000 39819000 45577000 48283000 44210000 49721000 32916000 49240000 3333500 63126000 69458000 63714000 42404000 47176000 48801000 43234000 47920000 7 7 2 7 7 7 7 7 7 7 7 22857000 32251000 38677 39586000 61878000 52143000 27512000 29540000 32038000 28600000 32509000 21281000 30121000 2325600 40054000 58460000 51837000 29844000 31147000 32412000 27971000 31345000 4 4 1 4 4 4 4 4 4 4 4 12496000 20479000 9617.1 22967000 11448000 10807000 12307000 16037000 16245000 15610000 17213000 11635000 19118000 1007800 23072000 10998000 11877000 12561000 16029000 16388000 15263000 16574000 3 3 1 3 3 3 3 3 3 3 3 3586700000 1925200000 1661500000 4388 897 4104 24647;24648;24649;24650;24651;24652;24653;24654 29646;29647;29648;29649;29650;29651;29652;29653 29649 8 ELIFEETAR Unmodified 1106.5608 0.56078914 845 P28482;P28482-2 MAPK1 Mitogen-activated protein kinase 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 2 3 52.354 52.125 2 2.2971E-05 16992 20211116_3439_TMUAki_TMT10x_S_F1 142.04 85.496 18651000 29578000 182150 32330000 24727000 26835000 19038000 25610000 23262000 22710000 24946000 17366000 27609000 1641500 32706000 23567000 27649000 19740000 26013000 23540000 22299000 24012000 5 5 3 5 5 5 5 5 5 5 5 8483100 12710000 63443 14141000 14507000 18169000 10633000 10674000 9994300 10181000 10365000 7898100 11865000 722030 14385000 13808000 18093000 10968000 11216000 10209000 9963200 9987300 2 2 1 2 2 2 2 2 2 2 2 10168000 16868000 118700 18190000 10220000 8666100 8405900 14936000 13268000 12529000 14581000 9467700 15744000 919480 18321000 9758600 9556800 8771800 14798000 13332000 12336000 14025000 3 3 2 3 3 3 3 3 3 3 3 1083400000 620120000 463310000 4389 845 4105 24655;24656;24657;24658;24659 29654;29655;29656;29657;29658;29659 29656 6 ELIFQETAR Unmodified 1105.5768 0.57677356 826 P27361;P27361-2 MAPK3 Mitogen-activated protein kinase 3 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 49.492 49.462 2 0.00070051 16961 20211116_3441_TMUAki_TMT10x_S_F3 114.5 89.325 9722000 15643000 18736 17533000 15265000 16042000 10916000 14157000 14437000 12623000 13884000 9051400 14603000 786300 17731000 14521000 16392000 11409000 14443000 14513000 12392000 13410000 4 4 2 4 4 4 4 4 4 4 4 5254000 8044300 4290.7 9165800 10273000 11902000 6769400 7127700 7361300 6532400 7125100 4891200 7510300 402720 9312400 9755800 11849000 7068000 7470100 7454500 6404400 6880600 2 2 1 2 2 2 2 2 2 2 2 4468000 7598300 14445 8367000 4991800 4140100 4146700 7029200 7075300 6090900 6758400 4160200 7092900 383580 8418200 4765500 4543300 4341000 6973000 7058500 5987300 6529400 2 2 1 2 2 2 2 2 2 2 2 538210000 365190000 173020000 4390 826 4106 24660;24661;24662;24663 29660;29661;29662;29663 29662 4 ELIHLLPIK Unmodified 1074.6801 0.68011642 2293 Q8WTT2 NOC3L Nucleolar complex protein 3 homolog yes yes 0 0 0 0 By MS/MS 8 0 1 1 64.39 64.364 3 0.0014417 19422 20211116_3447_TMUAki_TMT10x_S_F8 76.827 76.466 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4391 2293 4107 24664 29664 29664 1 ELIIGDR Unmodified 814.45487 0.45486751 805 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 42.04 42.002 2 0.016333 12383 20211116_3429_TMUAki_TMT10x_P_F2 91.9 29.183 18643000 29445000 409350 35367000 24731000 23601000 18493000 17732000 23783000 21116000 23663000 17361000 27498000 1929300 35486000 23575000 24637000 19248000 18427000 23959000 20483000 22831000 7 7 4 7 7 7 7 7 7 7 7 9084200 13282000 41790 15432000 17494000 15754000 9582200 8533900 10843000 9171100 11353000 8458200 12401000 852950 15596000 16574000 15867000 10172000 9060100 10994000 8930700 10936000 4 4 2 4 4 4 4 4 4 4 4 9559300 16164000 367560 19935000 7236100 7847200 8910400 9198600 12940000 11944000 12310000 8903100 15096000 1076400 19889000 7001000 8770100 9075400 9366500 12965000 11552000 11895000 3 3 2 3 3 3 3 3 3 3 3 1239400000 692890000 546550000 4392 805 4108 24665;24666;24667;24668;24669;24670 29665;29666;29667;29668;29669;29670 29665 6 ELIKPPTILR Unmodified 1178.7387 0.73869393 3249 Q9Y2T2;P53677;P53677-2 AP3M1;AP3M2 AP-3 complex subunit mu-1;AP-3 complex subunit mu-2 yes no 0 0 0 1 By MS/MS 1 0 1 1 51.942 51.942 3 0.0020402 14812 20211116_3428_TMUAki_TMT10x_P_F1 72.34 54.608 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4393 3249 4109 24671 29671 29671 1 ELILFSNSDNER Unmodified 1435.6943 0.69432251 625;1500 Q02880;Q02880-2;P11388;P11388-2;P11388-3;P11388-4 TOP2B;TOP2A DNA topoisomerase 2-beta;DNA topoisomerase 2-alpha no no 0 0 0 0 By MS/MS By MS/MS 3.5 0.922 2 2 5 1 5 5 59.887 59.755 2;3 1.1439E-45 18348 20211116_3431_TMUAki_TMT10x_P_F4 276 241.62 47957000 85080000 163810 81105000 53680000 86210000 56465000 69115000 76773000 67252000 68914000 44650000 79374000 3812800 83098000 51525000 87126000 57758000 71079000 76936000 65759000 66722000 7 7 2 7 7 7 7 7 7 7 7 29296000 51467000 30047 47405000 33520000 67793000 38850000 43952000 48565000 42168000 41181000 27276000 48009000 2286400 48953000 32261000 67269000 39429000 45837000 48720000 41257000 39955000 3 3 1 3 3 3 3 3 3 3 3 18661000 33613000 133760 33700000 20161000 18418000 17615000 25164000 28208000 25085000 27732000 17375000 31365000 1526400 34145000 19264000 19857000 18329000 25242000 28216000 24502000 26767000 4 4 1 4 4 4 4 4 4 4 4 4085000000 1571300000 2513700000 4394 1500;625 4110 24672;24673;24674;24675;24676;24677;24678;24679;24680;24681 29672;29673;29674;29675;29676;29677;29678;29679;29680 29675 9 ELISFLSEPEILVK Unmodified 1615.9073 0.9072754 16 A6NDU8 C5orf51 UPF0600 protein C5orf51 yes yes 0 0 0 0 By MS/MS 6 0 1 1 80.585 80.573 3 9.3944E-08 25997 20211116_3434_TMUAki_TMT10x_P_F6 121.04 106.61 3390300 5995000 34634 5529100 3304400 5588200 4071700 2913800 2822500 3284200 4040500 3156700 5592300 282370 5674400 3187900 5629100 4051300 3108600 2969300 3192300 3860100 2 2 1 2 2 2 2 2 2 2 2 3390300 5995000 34634 5529100 3304400 5588200 4071700 2913800 2822500 3284200 4040500 3156700 5592300 282370 5674400 3187900 5629100 4051300 3108600 2969300 3192300 3860100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 285190000 285190000 0 4395 16 4111 24682 29681;29682 29681 2 ELISNASDALDK Unmodified 1274.6354 0.63541065 553;672 P08238;P14625 HSP90AB1;HSP90B1 Heat shock protein HSP 90-beta;Endoplasmin no no 0 0 0 0 By MS/MS By MS/MS 3.83 1.5 1 3 4 3 4 3 11 7 55.46 55.425 2;3 2.2036E-19 16873 20211116_3433_TMUAki_TMT10x_P_F5 226.73 165.76 188290000 273500000 807540 426560000 365170000 269690000 203870000 157320000 188550000 150230000 254140000 175310000 255780000 17108000 422010000 346020000 281890000 214750000 165410000 194820000 147020000 243130000 29 29 13 29 29 29 29 29 29 29 29 109810000 157830000 625220 233860000 311720000 229300000 151270000 93356000 106840000 89042000 144010000 102240000 147560000 11722000 233130000 294840000 230820000 160450000 101650000 111960000 87141000 137770000 20 20 9 20 20 20 20 20 20 20 20 78478000 115670000 182320 192710000 53454000 40390000 52605000 63961000 81710000 61193000 110130000 73065000 108220000 5386300 188870000 51183000 51072000 54305000 63758000 82861000 59878000 105350000 9 9 4 9 9 9 9 9 9 9 9 20242000000 13542000000 6699100000 4396 553;672 4112 24683;24684;24685;24686;24687;24688;24689;24690;24691;24692;24693;24694;24695;24696;24697;24698;24699;24700 29683;29684;29685;29686;29687;29688;29689;29690;29691;29692;29693;29694;29695;29696;29697;29698;29699;29700;29701;29702;29703;29704;29705;29706;29707;29708;29709;29710;29711;29712 29698 30 ELISNASDALDKIR Unmodified 1543.8206 0.82058566 553;672 P08238;P14625 HSP90AB1;HSP90B1 Heat shock protein HSP 90-beta;Endoplasmin no no 0 0 0 1 By MS/MS By MS/MS 6.22 1.31 1 2 2 2 2 5 4 59.824 60.045 3 5.6414E-51 19921 20211116_3446_TMUAki_TMT10x_S_F7 278.62 237.14 79468000 169300000 1148900 104740000 182990000 318040000 167600000 278370000 253130000 245720000 190660000 73994000 157730000 8269400 114600000 175080000 309950000 173450000 284050000 251560000 241330000 185850000 12 12 10 12 12 12 12 12 12 12 12 50153000 105740000 582040 63449000 141660000 260070000 134560000 176230000 164460000 156440000 120250000 46695000 98511000 5142500 70656000 135630000 250930000 137790000 182820000 164430000 153600000 117360000 7 7 5 7 7 7 7 7 7 7 7 29315000 63553000 566860 41289000 41324000 57976000 33034000 102140000 88674000 89283000 70410000 27300000 59219000 3126900 43944000 39449000 59025000 35663000 101240000 87128000 87728000 68487000 5 5 5 5 5 5 5 5 5 5 5 14757000000 7688300000 7068800000 4397 553;672 4113 24701;24702;24703;24704;24705;24706;24707;24708;24709 29713;29714;29715;29716;29717;29718;29719;29720;29721;29722;29723;29724;29725 29724 13 ELISNASDALDKIRYESLTDPSK Unmodified 2564.297 0.29697647 553 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 2 By MS/MS 7 0 1 1 71.754 71.962 4 0.090532 24911 20211116_3446_TMUAki_TMT10x_S_F7 36.677 24 4679700 8340300 6832.6 5911000 6546000 7141300 5953400 7025700 6705800 6796300 6876200 4357300 7773300 420490 6220200 6262200 7196600 6093100 7142200 6795200 6647100 6627900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4679700 8340300 6832.6 5911000 6546000 7141300 5953400 7025700 6705800 6796300 6876200 4357300 7773300 420490 6220200 6262200 7196600 6093100 7142200 6795200 6647100 6627900 1 1 1 1 1 1 1 1 1 1 1 728010000 0 728010000 4398 553 4114 24710 29726 29726 1 ELISNASDALEK Unmodified 1288.6511 0.65106071 1578 Q12931;Q12931-2 TRAP1 Heat shock protein 75 kDa, mitochondrial yes no 0 0 0 0 By MS/MS 4 0 1 1 55.695 55.847 2 6.6795E-06 16767 20211116_3431_TMUAki_TMT10x_P_F4 105.2 77.035 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4399 1578 4115 24711 29727 29727 1 ELISNSSDALDK Unmodified 1290.6303 0.63032527 544 P07900;P07900-2;Q14568 HSP90AA1;HSP90AA2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2 yes no 0 0 0 0 By MS/MS By MS/MS 3.43 0.495 4 3 3 4 49.795 49.732 2;3 2.5043E-19 15896 20211116_3430_TMUAki_TMT10x_P_F3 225.17 169.5 20778000 32344000 129020 45960000 45170000 29007000 24454000 24417000 34501000 20769000 34418000 19346000 30231000 2023100 45671000 42788000 30493000 26199000 24948000 34656000 20435000 33204000 8 8 4 8 8 8 8 8 8 8 8 7151600 10744000 68015 15957000 32923000 19271000 10749000 8441600 12423000 7169000 11650000 6659300 10045000 1006100 15960000 31014000 19184000 12114000 9091200 12538000 7054000 11262000 3 3 2 3 3 3 3 3 3 3 3 13627000 21599000 61006 30002000 12247000 9736700 13705000 15975000 22077000 13600000 22768000 12687000 20186000 1017000 29711000 11774000 11309000 14085000 15857000 22118000 13381000 21942000 5 5 2 5 5 5 5 5 5 5 5 2469700000 1365900000 1103800000 4400 544 4116 24712;24713;24714;24715;24716;24717;24718 29728;29729;29730;29731;29732;29733;29734;29735 29729 8 ELISNSSDALDKIR Unmodified 1559.8155 0.81550028 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 1 By MS/MS By MS/MS 5.29 1.03 2 2 2 1 3 4 52.446 52.639 3 1.3755E-33 14486 20211116_3434_TMUAki_TMT10x_P_F6 233.28 184.62 31967000 58174000 1193300 55745000 65974000 89157000 46426000 125530000 119550000 95267000 77651000 29773000 54274000 4190800 57540000 62837000 89584000 50378000 124890000 116930000 94289000 76204000 9 9 7 9 9 9 9 9 9 9 9 14075000 24263000 339210 22779000 41731000 60883000 29307000 52331000 49086000 40058000 31756000 13107000 22634000 1822500 23913000 39719000 59481000 30990000 53271000 48456000 39628000 31170000 4 4 2 4 4 4 4 4 4 4 4 17892000 33911000 854080 32966000 24243000 28274000 17119000 73198000 70462000 55209000 45895000 16666000 31639000 2368300 33627000 23118000 30103000 19388000 71617000 68477000 54661000 45034000 5 5 5 5 5 5 5 5 5 5 5 3403800000 1913500000 1490300000 4401 544 4117 24719;24720;24721;24722;24723;24724;24725 29736;29737;29738;29739;29740;29741;29742;29743;29744 29739 9 ELKENGELLPILR Unmodified 1522.8719 0.87189295 376 O76003 GLRX3 Glutaredoxin-3 yes yes 0 0 0 1 By MS/MS 6 0 1 1 59.912 59.961 3 0.00044009 17531 20211116_3434_TMUAki_TMT10x_P_F6 78.505 62.281 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4402 376 4118 24726 29745 29745 1 ELKEPPQGAHFLSR Unmodified 1607.842 0.8419898 464 P00374;P00374-2 DHFR Dihydrofolate reductase yes no 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 24.353 24.44 4 0.029804 5312 20211116_3435_TMUAki_TMT10x_P_F7 47.916 32.714 2256500 3674100 3297.6 3868700 4315000 4613100 2801900 2355000 2630700 2268800 3007700 2101000 3429100 216470 3944100 4099400 4602900 2915900 2505700 2697100 2219400 2889800 2 2 1 2 2 2 2 2 2 2 2 2256500 3674100 3297.6 3868700 4315000 4613100 2801900 2355000 2630700 2268800 3007700 2101000 3429100 216470 3944100 4099400 4602900 2915900 2505700 2697100 2219400 2889800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 204200000 204200000 0 4403 464 4119 24727;24728 29746;29747 29746 2 ELKIDIIPNPQER Unmodified 1563.8621 0.86205654 553 P08238;Q58FF7 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 0 0 0 1 By MS/MS By MS/MS 5.73 1.86 2 2 2 3 4 8 17 3 19 22 44.604 44.663 2;3 1.3041E-09 16653 20211116_3445_TMUAki_TMT10x_S_F6 147.83 133.15 494610000 814780000 4437800 756270000 714800000 739640000 560690000 512970000 607630000 575330000 656820000 460550000 760060000 46197000 775400000 681650000 749430000 578250000 534860000 617850000 559330000 632090000 52 52 27 52 52 52 52 52 52 52 52 210610000 331070000 797450 307980000 345890000 445600000 266120000 212000000 252490000 232340000 265890000 196100000 308830000 18868000 317880000 329620000 440210000 273680000 227950000 257940000 226080000 256080000 21 21 10 21 21 21 21 21 21 21 21 284000000 483720000 3640400 448280000 368910000 294040000 294580000 300960000 355140000 342990000 390940000 264450000 451230000 27328000 457520000 352030000 309220000 304570000 306910000 359910000 333250000 376010000 31 31 17 31 31 31 31 31 31 31 31 94503000000 46224000000 48279000000 4404 553 4120 24729;24730;24731;24732;24733;24734;24735;24736;24737;24738;24739;24740;24741;24742;24743;24744;24745;24746;24747;24748;24749;24750;24751;24752;24753;24754;24755;24756;24757;24758;24759;24760;24761;24762;24763;24764;24765;24766;24767;24768;24769 29748;29749;29750;29751;29752;29753;29754;29755;29756;29757;29758;29759;29760;29761;29762;29763;29764;29765;29766;29767;29768;29769;29770;29771;29772;29773;29774;29775;29776;29777;29778;29779;29780;29781;29782;29783;29784;29785;29786;29787;29788;29789;29790;29791;29792;29793;29794;29795;29796;29797;29798;29799;29800;29801;29802;29803;29804 29788 57 ELKTDSSPNQAR Unmodified 1344.6634 0.66335673 818 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 1.12 1 1 1 1 3 1 28.851 28.718 3 1.0972E-07 5816 20211116_3431_TMUAki_TMT10x_P_F4 135.81 113.13 532120 898370 1620.6 709090 826740 997480 670710 496290 598850 471190 683290 495430 837570 44758 741070 788570 987120 686260 529140 615370 461230 656530 3 3 1 3 3 3 3 3 3 3 3 443080 743730 1620.6 600040 723570 909060 572680 417240 513090 401950 572950 412560 693440 41139 626910 690030 895980 586940 448580 526710 393200 550850 2 2 1 2 2 2 2 2 2 2 2 89040 154640 0 109050 103160 88420 98022 79059 85760 69243 110340 82873 144130 3619.1 114160 98532 91138 99317 80560 88655 68030 105680 1 1 0 1 1 1 1 1 1 1 1 38786000 34099000 4686600 4405 818 4121 24770;24771;24772;24773 29805;29806;29807 29805 3 ELLAVPDNYK Unmodified 1160.6077 0.60773933 3335 Q9Y617;Q9Y617-2 PSAT1 Phosphoserine aminotransferase yes no 0 0 0 0 By MS/MS By MS/MS 4.8 0.748 4 4 2 5 5 58.557 58.638 2;3 3.4601E-07 17397 20211116_3445_TMUAki_TMT10x_S_F6 114.97 79.457 24797000 40822000 727210 49553000 57590000 64678000 36763000 45366000 46058000 40939000 41586000 23094000 38124000 3190800 50162000 54740000 64523000 38667000 46967000 46290000 40165000 40255000 9 9 8 9 9 9 9 9 9 9 9 16830000 27592000 416230 33582000 50886000 57702000 30607000 31456000 31680000 27840000 28577000 15673000 25769000 2258100 34197000 48307000 56706000 32140000 33198000 32072000 27339000 27663000 6 6 5 6 6 6 6 6 6 6 6 7967900 13230000 310980 15971000 6704200 6975600 6155600 13910000 14378000 13098000 13009000 7421200 12355000 932720 15965000 6433400 7817000 6527100 13769000 14218000 12826000 12592000 3 3 3 3 3 3 3 3 3 3 3 3547800000 2432600000 1115200000 4406 3335 4122 24774;24775;24776;24777;24778;24779;24780;24781;24782;24783 29808;29809;29810;29811;29812;29813;29814;29815;29816;29817;29818;29819 29819 12 ELLEIVKK Unmodified 970.60628 0.60628277 885 P31153;P31153-2 MAT2A S-adenosylmethionine synthase isoform type-2 yes no 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 56.496 56.903 3 0.00095318 18067 20211116_3435_TMUAki_TMT10x_P_F7 102.61 75.51 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4407 885 4123 24784;24785 29820;29821 29821 2 ELLESNFTLVGDDGTNK Unmodified 1850.8898 0.88978743 2402 Q96A33;Q96A33-2 CCDC47 Coiled-coil domain-containing protein 47 yes no 0 0 0 0 By MS/MS By MS/MS 3.29 1.03 2 2 2 1 4 3 71.848 71.668 3 6.3291E-08 25944 20211116_3441_TMUAki_TMT10x_S_F3 113.11 97.299 28355000 47131000 270430 45009000 31625000 37483000 32719000 26766000 25205000 27369000 34714000 26403000 43970000 2562900 45954000 30362000 38409000 32899000 27773000 26308000 26705000 33193000 10 10 7 10 10 10 10 10 10 10 10 12139000 19769000 88089 19352000 13226000 23060000 14561000 13208000 11489000 12721000 15500000 11303000 18445000 1052400 19827000 12717000 23041000 14605000 13912000 11964000 12444000 14828000 4 4 2 4 4 4 4 4 4 4 4 16216000 27362000 182350 25658000 18399000 14424000 18158000 13558000 13716000 14648000 19214000 15100000 25525000 1510400 26127000 17645000 15367000 18294000 13861000 14343000 14261000 18365000 6 6 5 6 6 6 6 6 6 6 6 2709100000 1611900000 1097200000 4408 2402 4124 24786;24787;24788;24789;24790;24791;24792 29822;29823;29824;29825;29826;29827;29828;29829;29830;29831;29832 29830 11 ELLFHPALFEVPSLK Unmodified 1738.9658 0.96579333 3125 Q9UHY1 NRBP1 Nuclear receptor-binding protein yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 78.146 78.124 3 0.00032122 25662 20211116_3436_TMUAki_TMT10x_P_F8 78.069 58.994 12679000 19914000 100680 18212000 12937000 20370000 14354000 11889000 11567000 12406000 14218000 11806000 18575000 1098000 18731000 12443000 20428000 14400000 12531000 11984000 12095000 13633000 3 3 2 3 3 3 3 3 3 3 3 10265000 15886000 46146 14336000 9964300 17491000 11079000 8955600 8824700 9532400 11010000 9557200 14817000 839150 14782000 9581800 17432000 11109000 9553500 9153700 9286100 10553000 2 2 1 2 2 2 2 2 2 2 2 2414600 4028100 54531 3875800 2973100 2879100 3275900 2933000 2742700 2873800 3207700 2248600 3758000 258830 3949800 2861700 2995700 3290600 2977600 2830100 2809200 3080000 1 1 1 1 1 1 1 1 1 1 1 1846900000 947740000 899120000 4409 3125 4125 24793;24794 29833;29834 29833 2 ELLFLSNANPSLLER Unmodified 1714.9254 0.92538508 1152 P51398;P51398-2;P51398-3 DAP3 28S ribosomal protein S29, mitochondrial yes no 0 0 0 0 By MS/MS 7 0 1 1 77.971 78.045 3 9.654E-05 26992 20211116_3435_TMUAki_TMT10x_P_F7 81.656 62.332 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4410 1152 4126 24795 29835 29835 1 ELLGQGLLLR Unmodified 1110.6761 0.67609367 2588 Q99613;Q99613-2;B5ME19 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 0 0 0 0 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 66.991 67.142 2 8.4145E-09 20546 20211116_3447_TMUAki_TMT10x_S_F8 176.43 127.01 118650000 201240000 977800 187630000 145300000 172750000 140890000 128650000 117450000 129280000 151530000 110480000 187730000 10547000 192150000 139230000 175910000 142410000 133050000 121720000 126240000 145120000 13 13 7 13 13 13 13 13 13 13 13 43509000 71953000 289140 68133000 51654000 87954000 55354000 45938000 42307000 46716000 52412000 40513000 67125000 3854100 70073000 49630000 87435000 55551000 48851000 43970000 45594000 50247000 5 5 2 5 5 5 5 5 5 5 5 75139000 129290000 688660 119500000 93642000 84794000 85532000 82713000 75146000 82566000 99118000 69964000 120600000 6693100 122080000 89597000 88477000 86861000 84198000 77753000 80644000 94873000 8 8 5 8 8 8 8 8 8 8 8 6672000000 3444600000 3227400000 4411 2588 4127 24796;24797;24798;24799;24800;24801 29836;29837;29838;29839;29840;29841;29842;29843;29844;29845;29846;29847;29848 29846 13 ELLHSQNTWLNTELK Unmodified 1824.937 0.9370124 641 P12270;P12270-2 TPR Nucleoprotein TPR yes no 0 0 0 0 By MS/MS 7 0 1 1 59.103 59.619 3 0.00078265 19776 20211116_3446_TMUAki_TMT10x_S_F7 69.045 57.069 3997100 6307100 53136 6612700 4641400 4342400 4047700 5220700 4498500 4835100 5821800 3722100 5886400 389930 6690500 4438700 4583500 4150700 5252200 4603600 4738100 5575100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3997100 6307100 53136 6612700 4641400 4342400 4047700 5220700 4498500 4835100 5821800 3722100 5886400 389930 6690500 4438700 4583500 4150700 5252200 4603600 4738100 5575100 1 1 1 1 1 1 1 1 1 1 1 303590000 0 303590000 4412 641 4128 24802 29849 29849 1 ELLIFNK Unmodified 875.51165 0.5116541 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 65.351 65.598 2 0.0032147 21585 20211116_3435_TMUAki_TMT10x_P_F7 119.56 39.618 61054000 100610000 1023800 105720000 91321000 131970000 54294000 101030000 72918000 91491000 92720000 56854000 93896000 6344300 107880000 86687000 132130000 57585000 104000000 74069000 89748000 88830000 4 4 3 4 4 4 4 4 4 4 4 30409000 50450000 920880 51699000 59498000 101170000 25508000 54371000 30237000 46265000 48173000 28321000 47080000 3786800 53393000 56251000 98963000 27798000 57399000 31190000 45518000 45916000 2 2 2 2 2 2 2 2 2 2 2 30645000 50156000 102870 54019000 31823000 30802000 28786000 46663000 42681000 45226000 44546000 28533000 46816000 2557500 54488000 30437000 33168000 29788000 46600000 42879000 44230000 42914000 2 2 1 2 2 2 2 2 2 2 2 5235900000 3264000000 1971900000 4413 586 4129 24803;24804;24805;24806 29850;29851;29852;29853 29851 4 ELLIHER Unmodified 908.50797 0.50796571 2418 Q96BN8 OTULIN Ubiquitin thioesterase otulin yes yes 0 0 0 0 By MS/MS 3 0 1 1 33.208 32.969 3 0.019114 10223 20211116_3441_TMUAki_TMT10x_S_F3 68.383 5.9183 327250 510460 3981.9 542580 379840 335370 420070 269460 323510 299730 402180 304730 476440 31579 548150 365460 352950 421010 278200 336130 291480 385530 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 327250 510460 3981.9 542580 379840 335370 420070 269460 323510 299730 402180 304730 476440 31579 548150 365460 352950 421010 278200 336130 291480 385530 1 1 1 1 1 1 1 1 1 1 1 21998000 0 21998000 4414 2418 4130 24807 29854 29854 1 ELLIIGGVAAR Unmodified 1110.6761 0.67609367 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 By MS/MS By MS/MS 5.08 2.33 2 1 1 2 2 2 2 7 5 62.844 63.034 2 1.8575E-14 20546 20211116_3435_TMUAki_TMT10x_P_F7 189.73 137.74 81703000 129330000 143660 119230000 78201000 114740000 88603000 59406000 64039000 66943000 87081000 76063000 120640000 5377400 122280000 75157000 115920000 88569000 63418000 67041000 65070000 83291000 8 8 3 8 8 8 8 8 8 8 8 52518000 81364000 46494 74520000 53422000 84140000 57052000 37471000 40659000 41786000 54514000 48890000 75896000 3148900 76650000 51236000 84074000 57173000 40583000 42573000 40633000 52159000 4 4 1 4 4 4 4 4 4 4 4 29185000 47970000 97162 44707000 24779000 30596000 31551000 21935000 23380000 25157000 32567000 27173000 44749000 2228500 45628000 23921000 31845000 31397000 22835000 24468000 24437000 31132000 4 4 2 4 4 4 4 4 4 4 4 9795200000 4570400000 5224800000 4415 2334 4131 24808;24809;24810;24811;24812;24813;24814;24815;24816;24817;24818;24819 29855;29856;29857;29858;29859;29860;29861;29862;29863;29864;29865;29866 29859 12 ELLLPDTER Unmodified 1084.5764 0.57643921 2289 Q8TEX9;Q8TEX9-2 IPO4 Importin-4 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 51.472 51.11 2 0.0023952 17593 20211116_3441_TMUAki_TMT10x_S_F3 85.731 41.284 1550200 2718300 59312 3175600 1578200 1445500 1436900 2431600 2510400 2045200 2590800 1443800 2538200 184190 3181500 1513300 1601500 1498100 2410900 2509800 2013400 2496800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1550200 2718300 59312 3175600 1578200 1445500 1436900 2431600 2510400 2045200 2590800 1443800 2538200 184190 3181500 1513300 1601500 1498100 2410900 2509800 2013400 2496800 1 1 1 1 1 1 1 1 1 1 1 86366000 0 86366000 4416 2289 4132 24820;24821 29867;29868 29868 2 ELLLQPVTISR Unmodified 1267.75 0.7499869 1269 P59998;P59998-3;P59998-2 ARPC4 Actin-related protein 2/3 complex subunit 4 yes no 0 0 0 0 By MS/MS By MS/MS 6.8 0.748 2 2 1 2 3 62.675 62.971 2 2.9131E-19 21124 20211116_3446_TMUAki_TMT10x_S_F7 235.01 205.87 34157000 57934000 329710 55248000 42668000 51938000 36942000 44618000 42039000 42611000 44616000 31805000 54049000 3094300 56502000 40778000 52951000 37929000 45674000 42636000 41699000 42960000 6 6 2 6 6 6 6 6 6 6 6 15265000 25344000 117690 24201000 20351000 32631000 18311000 19563000 18378000 18075000 19718000 14213000 23644000 1350100 24896000 19463000 32428000 18682000 20506000 18741000 17715000 18980000 3 3 1 3 3 3 3 3 3 3 3 18893000 32591000 212020 31047000 22317000 19307000 18631000 25055000 23662000 24536000 24898000 17592000 30405000 1744200 31606000 21315000 20522000 19247000 25169000 23895000 23985000 23980000 3 3 1 3 3 3 3 3 3 3 3 4106600000 2131600000 1975100000 4417 1269 4133 24822;24823;24824;24825;24826 29869;29870;29871;29872;29873;29874;29875 29874 7 ELLLSAIDSVNATSK Unmodified 1559.8407 0.8406524 1042 P46087;P46087-2;P46087-4;P46087-3 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 0 0 0 0 By MS/MS By matching 7.25 0.433 3 1 3 1 77.201 77.255 2;3 9.2575E-14 26687 20211116_3435_TMUAki_TMT10x_P_F7 141.58 87.899 8321000 14566000 121900 12131000 8427700 17297000 9808900 9725800 8458500 9023400 10347000 7748200 13583000 755380 12625000 8119700 17133000 9835600 10250000 8731200 8841700 9922900 2 2 1 2 2 2 2 2 2 2 2 8321000 14566000 121900 12131000 8427700 17297000 9808900 9725800 8458500 9023400 10347000 7748200 13583000 755380 12625000 8119700 17133000 9835600 10250000 8731200 8841700 9922900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2523400000 1895600000 627830000 4418 1042 4134 24827;24828;24829;24830 29876;29877 29876 2 ELLLTGPGLEER Unmodified 1325.7191 0.7190807 2188 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 60.515 60.298 2 1.716E-15 21361 20211116_3441_TMUAki_TMT10x_S_F3 170.89 125.81 16035000 26944000 87663 27144000 19278000 26726000 17903000 24129000 24482000 23699000 22661000 14930000 25142000 1336800 27671000 18448000 27194000 18435000 24651000 24554000 23163000 21916000 5 5 2 5 5 5 5 5 5 5 5 7605400 12677000 87663 12789000 10763000 18215000 10347000 11972000 11594000 11583000 10768000 7081800 11830000 724640 13120000 10313000 18081000 10556000 12476000 11712000 11329000 10413000 3 3 2 3 3 3 3 3 3 3 3 8429800 14266000 0 14355000 8515800 8511500 7555400 12158000 12888000 12116000 11893000 7848300 13312000 612170 14551000 8135500 9113400 7879000 12176000 12842000 11835000 11503000 2 2 0 2 2 2 2 2 2 2 2 1260100000 787900000 472230000 4419 2188 4135 24831;24832;24833;24834 29878;29879;29880;29881;29882;29883 29881 6 ELLNETEEEINK Unmodified 1459.7042 0.70421849 133 O14777 NDC80 Kinetochore protein NDC80 homolog yes yes 0 0 0 0 By MS/MS 1 0 1 1 58.268 58.268 3 0.00013949 17357 20211116_3428_TMUAki_TMT10x_P_F1 89.629 68.772 2831600 4341100 5028.4 5116100 5344600 5614000 3696300 3221700 2975800 2742200 3713400 2636500 4053600 274640 5172000 5083500 5634700 3813200 3382000 3085100 2698000 3559400 1 1 1 1 1 1 1 1 1 1 1 2831600 4341100 5028.4 5116100 5344600 5614000 3696300 3221700 2975800 2742200 3713400 2636500 4053600 274640 5172000 5083500 5634700 3813200 3382000 3085100 2698000 3559400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 442530000 442530000 0 4420 133 4136 24835 29884 29884 1 ELLPEIR Unmodified 868.50182 0.5018177 1091 P49321;P49321-3;P49321-4;P49321-2 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 0 By MS/MS By MS/MS 2.83 1.07 1 1 2 2 3 3 51.758 51.663 2 0.0017576 14998 20211116_3431_TMUAki_TMT10x_P_F4 133.81 9.4391 20432000 32223000 16676 35357000 34454000 34959000 20740000 27786000 30580000 25246000 28067000 19022000 30079000 1664500 35843000 32676000 35477000 22059000 28537000 30590000 24761000 27153000 5 5 1 5 5 5 5 5 5 5 5 11195000 17322000 16676 19384000 25681000 26665000 13904000 15202000 16602000 14064000 15201000 10423000 16171000 1057700 19738000 24323000 26457000 14802000 16000000 16722000 13782000 14707000 3 3 1 3 3 3 3 3 3 3 3 9237000 14901000 0 15973000 8773000 8293900 6835900 12585000 13978000 11182000 12866000 8599300 13909000 606780 16105000 8353400 9019400 7256300 12537000 13868000 10979000 12446000 2 2 0 2 2 2 2 2 2 2 2 4926400000 2838800000 2087600000 4421 1091 4137 24836;24837;24838;24839;24840;24841 29885;29886;29887;29888;29889;29890 29887 6 ELLPVKK Unmodified 825.53239 0.53238955 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 1 By MS/MS 7 0 1 1 42.91 43.459 3 0.083188 13157 20211116_3446_TMUAki_TMT10x_S_F7 43.246 16.644 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4422 1546 4138 24842 29891 29891 1 ELLQESALIR Unmodified 1170.6608 0.66083754 1578 Q12931;Q12931-2 TRAP1 Heat shock protein 75 kDa, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 57.117 57.161 2 5.9924E-05 17770 20211116_3442_TMUAki_TMT10x_S_F4 100.88 64.497 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4423 1578 4139 24843;24844 29892;29893 29893 2 ELLQHPFLK Unmodified 1123.639 0.63897988 1606 Q13177;O75914;O75914-3;O75914-2;O75914-4 PAK2;PAK3 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34;Serine/threonine-protein kinase PAK 3 yes no 0 0 0 0 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 52.392 52.651 3 0.00051111 15215 20211116_3436_TMUAki_TMT10x_P_F8 98.943 59.233 27164000 42975000 70469 48087000 43138000 47490000 30996000 36606000 36578000 33822000 37063000 25292000 40120000 2428400 48687000 41054000 48172000 32248000 37684000 36984000 33147000 35738000 9 9 3 9 9 9 9 9 9 9 9 16763000 25455000 55218 29047000 33867000 38464000 22157000 22602000 22054000 20527000 22486000 15607000 23765000 1595600 29520000 32177000 38247000 23084000 23719000 22456000 20133000 21678000 6 6 2 6 6 6 6 6 6 6 6 10401000 17520000 15251 19040000 9270500 9026400 8839200 14004000 14523000 13295000 14577000 9684500 16354000 832820 19167000 8877300 9925000 9164500 13966000 14528000 13014000 14060000 3 3 1 3 3 3 3 3 3 3 3 4709400000 2491700000 2217600000 4424 1606 4140 24845;24846;24847;24848;24849;24850 29894;29895;29896;29897;29898;29899;29900;29901;29902;29903 29898 10 ELLQLADALGPSICMLK Oxidation (M) 1886.9846 0.98455622 618 P11172;P11172-2;P11172-3;P11172-4 UMPS Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase yes no 0 0 1 0 By MS/MS 7 0 1 1 80.533 80.553 3 0.0015425 28058 20211116_3435_TMUAki_TMT10x_P_F7 61.648 16.914 1366500 2162800 0 2115900 1392100 2284900 1679500 1420500 1186800 1441500 1461800 1272300 2017900 106320 2164400 1341500 2297900 1673300 1488500 1238700 1407000 1401600 1 1 0 1 1 1 1 1 1 1 1 1366500 2162800 0 2115900 1392100 2284900 1679500 1420500 1186800 1441500 1461800 1272300 2017900 106320 2164400 1341500 2297900 1673300 1488500 1238700 1407000 1401600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 609810000 609810000 0 4425 618 4141 24851 29904 29904 624 1 ELLQLADALGPSICMLK Unmodified 1870.9896 0.98964159 618 P11172;P11172-2;P11172-3;P11172-4 UMPS Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 81.544 81.545 3 1.6359E-08 26445 20211116_3447_TMUAki_TMT10x_S_F8 119.4 102.87 4011800 6231700 49682 6543200 4188400 5228400 4725900 2494700 2204200 2981400 4113100 3735400 5816000 337980 6633500 4029700 5346000 4687500 2688900 2420500 2891700 3908700 3 3 2 3 3 3 3 3 3 3 3 2681800 4322700 19314 4515600 2671400 3980500 3166400 1721900 1549500 1993900 2840700 2496800 4034200 196790 4585000 2572200 4037300 3135900 1872800 1692900 1936200 2700400 2 2 1 2 2 2 2 2 2 2 2 1330100 1909000 30368 2027600 1517000 1247900 1559500 772800 654690 987440 1272400 1238600 1781700 141190 2048500 1457500 1308700 1551600 816130 727540 955540 1208300 1 1 1 1 1 1 1 1 1 1 1 313450000 229530000 83919000 4426 618 4141 24852;24853 29905;29906;29907 29907 3 ELLQSFDSALQSVK Unmodified 1563.8144 0.81443765 1122 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 0 0 0 0 By MS/MS By MS/MS 6.2 1.33 1 2 1 1 2 3 78.782 78.78 3 1.4771E-06 25274 20211116_3434_TMUAki_TMT10x_P_F6 112.72 86.657 5899900 9877000 48391 9081800 6775000 8533300 7177500 5869100 5527400 6178000 6952500 5493700 9213300 542730 9312900 6509000 8667100 7208400 6111000 5745900 6021000 6662700 2 2 1 2 2 2 2 2 2 2 2 2659100 4463900 48391 4214300 2502700 4770600 2994100 2473800 2312900 2747600 3114400 2476200 4164300 263360 4325200 2415000 4774100 2990200 2639300 2411300 2672100 2979500 1 1 1 1 1 1 1 1 1 1 1 3240800 5413100 0 4867500 4272300 3762700 4183500 3395300 3214400 3430400 3838100 3017500 5049000 279370 4987700 4094000 3893100 4218100 3471700 3334700 3348900 3683100 1 1 0 1 1 1 1 1 1 1 1 1741500000 674990000 1066500000 4427 1122 4142 24854;24855;24856;24857;24858 29908;29909 29908 2 ELLTLDEKDPR Unmodified 1327.6983 0.69834526 1054 P46781 RPS9 40S ribosomal protein S9 yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 1.12 2 2 2 2 4 4 48.543 48.527 3 1.0108E-05 15376 20211116_3430_TMUAki_TMT10x_P_F3 111.63 72.205 53661000 81567000 179740 105270000 97717000 83386000 55440000 70751000 80186000 59948000 80084000 49959000 76200000 4539000 105390000 92598000 86014000 59212000 72249000 80489000 58994000 77257000 10 10 3 10 10 10 10 10 10 10 10 23978000 35587000 1724.6 45397000 76754000 63777000 33467000 31877000 36313000 27485000 35762000 22324000 33243000 2525700 45894000 72494000 63121000 36299000 33888000 36798000 27025000 34515000 5 5 1 5 5 5 5 5 5 5 5 29683000 45980000 178010 59872000 20962000 19609000 21973000 38875000 43873000 32463000 44322000 27635000 42956000 2013400 59496000 20104000 22893000 22913000 38361000 43691000 31969000 42742000 5 5 2 5 5 5 5 5 5 5 5 7183100000 4785800000 2397300000 4428 1054 4143 24859;24860;24861;24862;24863;24864;24865;24866 29910;29911;29912;29913;29914;29915;29916;29917;29918;29919 29910 10 ELLTLDEKDPRR Unmodified 1483.7995 0.79945628 1054 P46781 RPS9 40S ribosomal protein S9 yes yes 0 0 0 2 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 41.939 42.036 4 1.8297E-16 10302 20211116_3444_TMUAki_TMT10x_S_F5 203.61 157.13 10796000 15907000 124390 19009000 22470000 16678000 11500000 15628000 16973000 11630000 17205000 10053000 14854000 1131900 19138000 21274000 17110000 12408000 15822000 17036000 11523000 16590000 8 8 5 8 8 8 8 8 8 8 8 5922600 8533800 60307 9998100 17198000 13076000 7571400 8533200 9377600 6221900 9704400 5514600 7968400 665010 10142000 16249000 13029000 8239300 8836100 9472700 6171800 9351400 4 4 2 4 4 4 4 4 4 4 4 4873200 7373200 64082 9010600 5272100 3601600 3929000 7094300 7595500 5408200 7500600 4537900 6886100 466850 8995700 5025100 4081200 4169100 6986300 7563300 5351400 7238500 4 4 3 4 4 4 4 4 4 4 4 1122300000 679230000 443070000 4429 1054 4144 24867;24868;24869;24870;24871 29920;29921;29922;29923;29924;29925;29926;29927 29924 8 ELLTSFGPLK Unmodified 1103.6227 0.62266112 812 P26368;P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 0 0 0 0 By MS/MS By MS/MS 7.57 0.495 3 4 4 3 70.752 70.937 2;3 1.7487E-14 22189 20211116_3447_TMUAki_TMT10x_S_F8 234.05 109.07 53829000 90043000 484540 97698000 48298000 63939000 56310000 46532000 51281000 54551000 61762000 50122000 84048000 4650300 98622000 46529000 66828000 56543000 48429000 52762000 52947000 59255000 7 7 6 7 7 7 7 7 7 7 7 16891000 27362000 114150 28616000 18435000 30493000 19034000 14415000 15840000 17018000 19347000 15728000 25537000 1528400 29133000 17698000 30587000 19177000 15545000 16379000 16514000 18555000 3 3 3 3 3 3 3 3 3 3 3 36937000 62681000 370390 69081000 29864000 33446000 37275000 32117000 35441000 37533000 42414000 34394000 58512000 3121900 69489000 28831000 36241000 37366000 32883000 36383000 36434000 40700000 4 4 3 4 4 4 4 4 4 4 4 3891300000 2524300000 1367000000 4430 812 4145 24872;24873;24874;24875;24876;24877;24878 29928;29929;29930;29931;29932;29933;29934;29935;29936 29935 9 ELLTTMGDR Unmodified 1034.5066 0.50664508 145 O14950;P19105;P24844;P24844-2 MYL12B;MYL12A;MYL9 Myosin regulatory light chain 12B;Myosin regulatory light chain 12A;Myosin regulatory light polypeptide 9 yes no 0 0 0 0 By MS/MS 3 0 1 1 45.712 45.729 2 0.0010917 14244 20211116_3430_TMUAki_TMT10x_P_F3 85.38 49.886 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4431 145 4146 24879 29937 29937 1 ELLTTMGDR Oxidation (M) 1050.5016 0.5015597 145 O14950;P19105;P24844;P24844-2 MYL12B;MYL12A;MYL9 Myosin regulatory light chain 12B;Myosin regulatory light chain 12A;Myosin regulatory light polypeptide 9 yes no 0 0 1 0 By MS/MS 3 0 1 1 36.06 35.82 2 0.010597 11338 20211116_3441_TMUAki_TMT10x_S_F3 68.787 45.263 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4432 145 4146 24880 29938 29938 103 1 ELLTTMGDRFTDEEVDELYR Oxidation (M) 2447.1162 0.11623491 145 O14950;P19105 MYL12B;MYL12A Myosin regulatory light chain 12B;Myosin regulatory light chain 12A yes no 0 0 1 1 By MS/MS By MS/MS 2.2 1.17 2 1 1 1 2 3 64.584 64.351 3 2.5545E-24 22972 20211116_3441_TMUAki_TMT10x_S_F3 166.52 153.06 46962000 81282000 1104400 68952000 54070000 75516000 58302000 60648000 60789000 59791000 63040000 43734000 75798000 4970400 71311000 52015000 76191000 58994000 62388000 61813000 58430000 60743000 11 11 9 11 11 11 11 11 11 11 11 26735000 43782000 688750 37337000 25966000 48642000 32021000 31077000 30937000 29615000 33078000 24898000 40829000 2846200 38715000 25092000 48461000 32130000 32440000 31596000 28984000 31843000 5 5 4 5 5 5 5 5 5 5 5 20227000 37499000 415610 31615000 28104000 26874000 26281000 29571000 29852000 30176000 29962000 18836000 34969000 2124200 32597000 26923000 27730000 26864000 29948000 30217000 29447000 28900000 6 6 5 6 6 6 6 6 6 6 6 9438400000 5669900000 3768500000 4433 145 4147 24881;24882;24883;24884;24885 29939;29940;29941;29942;29943;29944;29945;29946;29947;29948;29949 29947 103 11 ELLTTMGDRFTDEEVDELYR Unmodified 2431.1213 0.12132029 145 O14950;P19105 MYL12B;MYL12A Myosin regulatory light chain 12B;Myosin regulatory light chain 12A yes no 0 0 0 1 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 75.086 74.983 3 1.0957E-71 25697 20211116_3429_TMUAki_TMT10x_P_F2 289.76 272.08 50378000 84364000 149670 80318000 58964000 64103000 65254000 34834000 28641000 38870000 58710000 46908000 78706000 4367500 81981000 56701000 65646000 64728000 37014000 31806000 37797000 55705000 12 12 7 12 12 12 12 12 12 12 12 23521000 36903000 84900 35383000 21759000 36566000 29476000 17251000 14407000 18430000 26741000 21901000 34428000 1949300 36222000 21059000 36744000 29029000 18550000 15754000 17951000 25414000 6 6 4 6 6 6 6 6 6 6 6 26857000 47462000 64769 44935000 37205000 27537000 35778000 17582000 14234000 20441000 31970000 25007000 44278000 2418200 45760000 35641000 28902000 35699000 18465000 16052000 19846000 30291000 6 6 3 6 6 6 6 6 6 6 6 6379100000 3233400000 3145700000 4434 145 4147 24886;24887;24888;24889;24890;24891 29950;29951;29952;29953;29954;29955;29956;29957;29958;29959;29960;29961 29953 12 ELLVPLTSSMYVPGK Unmodified 1632.8797 0.87968044 2576 Q99471 PFDN5 Prefoldin subunit 5 yes yes 0 0 0 0 By MS/MS 4.5 3.5 1 1 2 78.032 78.038 2 0.00074243 25496 20211116_3428_TMUAki_TMT10x_P_F1 72.2 50.114 3451400 5430700 35066 5902100 3429100 5464900 4042000 2781500 2259300 2897200 4025300 3213800 5069100 318510 5981300 3305500 5533900 4012800 2966900 2439100 2824800 3828400 1 1 1 1 1 1 1 1 1 1 1 3451400 5430700 35066 5902100 3429100 5464900 4042000 2781500 2259300 2897200 4025300 3213800 5069100 318510 5981300 3305500 5533900 4012800 2966900 2439100 2824800 3828400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 689240000 689240000 0 4435 2576 4148 24892;24893 29962;29963 29962 2 ELLVPLTSSMYVPGK Oxidation (M) 1648.8746 0.87459506 2576 Q99471 PFDN5 Prefoldin subunit 5 yes yes 0 0 1 0 By MS/MS By MS/MS 6.2 2.64 2 4 4 5 5 72.155 72.246 2;3 1.5786E-09 22688 20211116_3447_TMUAki_TMT10x_S_F8 135.86 109.92 30271000 50575000 162560 44344000 34372000 55549000 34737000 37488000 38129000 37957000 37941000 28184000 47169000 2508800 45846000 32963000 55493000 35321000 39041000 38635000 37051000 36606000 10 10 4 10 10 10 10 10 10 10 10 20882000 34442000 162560 30312000 20949000 44231000 24281000 25285000 25400000 25140000 25748000 19443000 32123000 1732700 31423000 20171000 43776000 24490000 26660000 25803000 24559000 24828000 6 6 4 6 6 6 6 6 6 6 6 9388700 16133000 0 14032000 13423000 11318000 10456000 12204000 12729000 12816000 12193000 8741300 15046000 776160 14423000 12792000 11717000 10832000 12381000 12831000 12492000 11778000 4 4 0 4 4 4 4 4 4 4 4 6717300000 3734200000 2983100000 4436 2576 4148 24894;24895;24896;24897;24898;24899;24900;24901;24902;24903 29964;29965;29966;29967;29968;29969;29970;29971;29972;29973;29974;29975;29976 29976 2813 13 ELLYFLDSCEPEFK Unmodified 1788.828 0.8280388 241 O43747;O43747-2 AP1G1 AP-1 complex subunit gamma-1 yes no 0 0 0 0 By MS/MS 2 0 1 1 80.086 80.067 3 8.2321E-05 26522 20211116_3440_TMUAki_TMT10x_S_F2 90.759 74.62 1709200 2792000 4552.6 2445400 2075500 1948000 2245000 1755000 1460600 1901800 2309800 1591400 2603900 151070 2511700 1994600 2010800 2244100 1798500 1550400 1851300 2201900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1709200 2792000 4552.6 2445400 2075500 1948000 2245000 1755000 1460600 1901800 2309800 1591400 2603900 151070 2511700 1994600 2010800 2244100 1798500 1550400 1851300 2201900 1 1 1 1 1 1 1 1 1 1 1 477130000 0 477130000 4437 241 4149 24904 29977 29977 1 ELLYGGTSPTAETILK Unmodified 1691.8982 0.89816728 445 O95793;O95793-2;O95793-3 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.6 0.49 2 3 2 3 68.075 68.093 2;3 2.2065E-50 21279 20211116_3445_TMUAki_TMT10x_S_F6 230.14 194.63 20282000 34593000 204190 34175000 23760000 30553000 23623000 21361000 21027000 22169000 26211000 18885000 32277000 1884500 34839000 22789000 31142000 23888000 22207000 21689000 21618000 25124000 4 4 3 4 4 4 4 4 4 4 4 9795400 17423000 170270 17148000 11721000 19669000 12667000 10564000 10682000 11166000 12754000 9121700 16257000 997760 17551000 11273000 19677000 12738000 11218000 11027000 10880000 12239000 2 2 2 2 2 2 2 2 2 2 2 10486000 17169000 33922 17027000 12039000 10884000 10956000 10797000 10345000 11003000 13457000 9763800 16020000 886720 17288000 11516000 11465000 11150000 10988000 10661000 10738000 12885000 2 2 1 2 2 2 2 2 2 2 2 2189600000 734840000 1454700000 4438 445 4150 24905;24906;24907;24908;24909 29978;29979;29980;29981;29982;29983 29983 6 ELMGEEILGASLSAPLTSYK Oxidation (M) 2124.066 0.06603724 3064 Q9P2J5;Q9P2J5-2 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 1 0 By MS/MS 5 0.816 1 1 1 3 78.042 78.046 3 2.1925E-06 26137 20211116_3433_TMUAki_TMT10x_P_F5 82.586 65.507 14117000 23837000 410890 20513000 13726000 26639000 16752000 15579000 15946000 15507000 18233000 13147000 22230000 1547800 21253000 13262000 26511000 16809000 16396000 16339000 15148000 17518000 4 4 4 4 4 4 4 4 4 4 4 14117000 23837000 410890 20513000 13726000 26639000 16752000 15579000 15946000 15507000 18233000 13147000 22230000 1547800 21253000 13262000 26511000 16809000 16396000 16339000 15148000 17518000 4 4 4 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2436700000 2436700000 0 4439 3064 4151 24910;24911;24912 29984;29985;29986;29987 29985 3107 4 ELMGEEILGASLSAPLTSYK Unmodified 2108.0711 0.071122618 3064 Q9P2J5;Q9P2J5-2 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By matching 6.5 0.5 1 1 1 1 79.593 79.605 3 5.7016E-05 25528 20211116_3434_TMUAki_TMT10x_P_F6 73.21 61.77 1482700 2547800 23029 2371600 1384800 2333500 1595900 1149700 1115600 1306600 1547100 1380700 2376700 143010 2431300 1334500 2353000 1592900 1233400 1171300 1269700 1479100 1 1 1 1 1 1 1 1 1 1 1 1482700 2547800 23029 2371600 1384800 2333500 1595900 1149700 1115600 1306600 1547100 1380700 2376700 143010 2431300 1334500 2353000 1592900 1233400 1171300 1269700 1479100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 863840000 381730000 482100000 4440 3064 4151 24913;24914 29988 29988 1 ELMLHAADVEALQAAK Oxidation (M) 1724.8767 0.87672033 641 P12270 TPR Nucleoprotein TPR yes yes 0 0 1 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 56.185 56.354 3 2.0982E-07 17004 20211116_3431_TMUAki_TMT10x_P_F4 105.14 82.939 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4441 641 4152 24915;24916;24917 29989;29990;29991 29989 674 3 ELMLHAADVEALQAAK Unmodified 1708.8818 0.8818057 641 P12270 TPR Nucleoprotein TPR yes yes 0 0 0 0 By MS/MS 6 0 1 1 61.417 61.445 3 1.458E-10 18146 20211116_3434_TMUAki_TMT10x_P_F6 122.93 100.73 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4442 641 4152 24918 29992 29992 1 ELNARPMEVFMCSVLKR Oxidation (M) 2095.0377 0.037671195 2919 Q9NR31;Q9NR31-2 SAR1A GTP-binding protein SAR1a yes no 0 0 1 2 By MS/MS 2.5 0.5 1 1 2 56.207 55.903 4 0.00040479 19563 20211116_3441_TMUAki_TMT10x_S_F3 69.522 44.963 1555800 2504500 0 2419500 2159300 1550200 1431200 1617400 1493100 1528900 2000500 1448400 2336700 104570 2461300 2050000 1634400 1491700 1638400 1534300 1496900 1914100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1555800 2504500 0 2419500 2159300 1550200 1431200 1617400 1493100 1528900 2000500 1448400 2336700 104570 2461300 2050000 1634400 1491700 1638400 1534300 1496900 1914100 1 1 0 1 1 1 1 1 1 1 1 509280000 0 509280000 4443 2919 4153 24919;24920 29993 29993 3021 1 ELNARPMEVFMCSVLKR Unmodified 2079.0428 0.042756573 2919 Q9NR31;Q9NR31-2 SAR1A GTP-binding protein SAR1a yes no 0 0 0 2 By MS/MS 4 0 1 1 70.155 69.978 4 8.0309E-16 23054 20211116_3442_TMUAki_TMT10x_S_F4 157.57 137.11 5078900 8608700 79172 8950600 7211200 3715200 5786500 2930800 2430700 3142900 5668300 4729500 8034100 524720 9028700 6883400 4090100 5840100 3025800 2734600 3060800 5367800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5078900 8608700 79172 8950600 7211200 3715200 5786500 2930800 2430700 3142900 5668300 4729500 8034100 524720 9028700 6883400 4090100 5840100 3025800 2734600 3060800 5367800 2 2 2 2 2 2 2 2 2 2 2 475290000 0 475290000 4444 2919 4153 24921 29994;29995 29994 2 ELNEDKLEKLEELTMDGAK Oxidation (M) 2220.0831 0.083143867 103 O00567 NOP56 Nucleolar protein 56 yes yes 0 0 1 2 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 69.029 68.825 4 0.0051098 22537 20211116_3442_TMUAki_TMT10x_S_F4 56.327 42.597 16789000 29510000 237760 23936000 22877000 30607000 21148000 31808000 31543000 30255000 26601000 15634000 27515000 1698800 24912000 21906000 30795000 21864000 32233000 31459000 29612000 25814000 3 3 3 3 3 3 3 3 3 3 3 5308300 8754200 118350 7247300 6538300 13785000 7322100 9828400 9591600 8828000 7884600 4943400 8163000 567620 7597600 6296100 13551000 7456400 10163000 9597900 8663100 7658800 1 1 1 1 1 1 1 1 1 1 1 11481000 20755000 119400 16688000 16339000 16821000 13826000 21980000 21951000 21427000 18717000 10691000 19352000 1131200 17314000 15610000 17244000 14407000 22071000 21861000 20949000 18155000 2 2 2 2 2 2 2 2 2 2 2 3047300000 1403500000 1643800000 4445 103 4154 24922;24923;24924;24925 29996;29997;29998 29998 78 3 ELNHPNIVK Unmodified 1062.5822 0.58219329 797 P24941;P24941-2 CDK2 Cyclin-dependent kinase 2 yes no 0 0 0 0 By MS/MS 5 0 1 1 34.466 34.417 3 0.011165 8494 20211116_3433_TMUAki_TMT10x_P_F5 59.931 42.605 722390 1106700 7065.5 1209500 1284800 1398600 842230 735040 743860 743380 950190 672670 1033100 74352 1229500 1221200 1398200 874410 781070 768380 725680 910230 1 1 1 1 1 1 1 1 1 1 1 722390 1106700 7065.5 1209500 1284800 1398600 842230 735040 743860 743380 950190 672670 1033100 74352 1229500 1221200 1398200 874410 781070 768380 725680 910230 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30608000 30608000 0 4446 797 4155 24926 29999 29999 1 ELNITAAK Unmodified 858.48108 0.48108226 1332 P62081 RPS7 40S ribosomal protein S7 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 1.12 2 2 2 2 4 4 44.377 44.441 2 0.00105 12494 20211116_3442_TMUAki_TMT10x_S_F4 129.1 63.847 46523000 74219000 31682 79435000 56199000 67216000 48352000 40597000 44086000 38873000 51490000 43313000 69274000 3499300 80485000 53657000 68631000 49324000 42568000 45300000 38036000 49442000 8 8 3 8 8 8 8 8 8 8 8 28709000 44901000 4943.5 47630000 40315000 51353000 32348000 23906000 25506000 22995000 29820000 26727000 41907000 2076900 48453000 38425000 51469000 33016000 25664000 26401000 22495000 28633000 4 4 1 4 4 4 4 4 4 4 4 17814000 29318000 26739 31805000 15884000 15863000 16005000 16690000 18580000 15878000 21670000 16586000 27367000 1422500 32032000 15232000 17162000 16308000 16903000 18899000 15541000 20809000 4 4 2 4 4 4 4 4 4 4 4 4081800000 2169600000 1912100000 4447 1332 4156 24927;24928;24929;24930;24931;24932;24933;24934 30000;30001;30002;30003;30004;30005;30006;30007 30005 8 ELNLSFCEIKR Unmodified 1407.718 0.71803484 1040 P46060 RANGAP1 Ran GTPase-activating protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 55.117 55.744 3 1.8391E-14 17591 20211116_3435_TMUAki_TMT10x_P_F7 181.98 115.92 40665000 63252000 242840 73517000 39610000 47311000 40913000 36587000 40050000 38451000 47785000 37864000 59059000 3536000 73882000 38024000 49573000 41405000 37796000 41056000 37477000 45857000 3 3 1 3 3 3 3 3 3 3 3 8772000 12720000 0 14522000 12490000 15225000 8356200 7508100 8302100 7815100 9285300 8167400 11876000 750870 14698000 11870000 15293000 8690500 8032400 8483200 7620000 8926700 1 1 0 1 1 1 1 1 1 1 1 31893000 50532000 242840 58994000 27120000 32086000 32557000 29079000 31748000 30636000 38499000 29697000 47184000 2785100 59184000 26154000 34280000 32715000 29764000 32573000 29857000 36930000 2 2 1 2 2 2 2 2 2 2 2 2191000000 1039000000 1152000000 4448 1040 4157 24935;24936;24937;24938 30008;30009;30010;30011;30012 30009 5 ELNNTCEPVVTQPKPK Unmodified 1852.9353 0.93529784 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 1 By MS/MS By MS/MS 5.14 0.639 1 4 2 5 2 39.76 39.817 3;4 1.4869E-42 9315 20211116_3434_TMUAki_TMT10x_P_F6 219.53 202.64 3868900 6135200 31202 7130300 12001000 7373400 4891000 4654500 6662700 4064400 6129500 3602500 5728600 444550 7207400 11329000 7435400 5387800 4851900 6681700 3993800 5929500 7 7 3 7 7 7 7 7 7 7 7 2564400 3976300 20433 4761100 10582000 6266400 3552700 2947400 4385800 2644500 4065900 2387800 3713200 330170 4824200 9970500 6216300 3997100 3155100 4414000 2595300 3932100 5 5 2 5 5 5 5 5 5 5 5 1304500 2159000 10769 2369200 1419100 1107000 1338300 1707100 2277000 1419800 2063600 1214700 2015300 114380 2383200 1358900 1219100 1390800 1696800 2267800 1398500 1997300 2 2 1 2 2 2 2 2 2 2 2 917330000 765630000 151700000 4449 2345 4158 24939;24940;24941;24942;24943;24944;24945 30013;30014;30015;30016;30017;30018;30019 30017 7 ELNQVMEQLGDAR Unmodified 1501.7195 0.7194914 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 0 By MS/MS 3 0 1 1 64.515 64.064 2 1.1629E-18 22887 20211116_3441_TMUAki_TMT10x_S_F3 161.7 132.81 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4450 1723 4159 24946 30020 30020 1 ELNVMFIETSAK Oxidation (M) 1396.6908 0.69081704 742;743 P20340;P20340-2;P20340-4 RAB6A Ras-related protein Rab-6A no no 0 0 1 0 By MS/MS By MS/MS 4.75 0.661 3 4 1 4 4 63.185 63.186 2;3 6.3067E-05 19833 20211116_3431_TMUAki_TMT10x_P_F4 96.756 81.784 16197000 27974000 168540 26807000 19652000 25050000 18039000 22302000 22307000 22839000 22676000 15082000 26098000 1512200 27403000 18811000 25566000 18514000 22830000 22520000 22284000 21864000 5 5 3 5 5 5 5 5 5 5 5 6277700 10384000 14038 9765900 8203100 13449000 7488700 8123400 8171200 8228400 8626700 5845100 9686900 548030 10062000 7847600 13354000 7654600 8531200 8299100 8032000 8307800 2 2 1 2 2 2 2 2 2 2 2 9919500 17590000 154510 17041000 11449000 11602000 10550000 14178000 14136000 14611000 14050000 9237000 16411000 964150 17342000 10963000 12212000 10860000 14298000 14221000 14252000 13556000 3 3 2 3 3 3 3 3 3 3 3 1624800000 580360000 1044400000 4451 742;743 4160 24947;24948;24949;24950;24951;24952;24953;24954 30021;30022;30023;30024;30025;30026;30027;30028;30029 30022 850 9 ELNVMFIETSAK Unmodified 1380.6959 0.69590241 742;743 P20340;P20340-2;P20340-4 RAB6A Ras-related protein Rab-6A no no 0 0 0 0 By matching By MS/MS 5.5 0.5 3 3 1 5 70.677 70.678 2;3 6.4408E-07 22310 20211116_3445_TMUAki_TMT10x_S_F6 123.95 102.26 6325000 10926000 34655 10492000 7862000 6147500 7160300 5282700 5057300 5878000 8098600 5889400 10193000 562940 10669000 7521900 6511300 7234600 5432600 5344900 5716300 7718300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6325000 10926000 34655 10492000 7862000 6147500 7160300 5282700 5057300 5878000 8098600 5889400 10193000 562940 10669000 7521900 6511300 7234600 5432600 5344900 5716300 7718300 2 2 1 2 2 2 2 2 2 2 2 1311500000 364640000 946830000 4452 742;743 4160 24955;24956;24957;24958;24959;24960 30030;30031;30032;30033 30031 4 ELNYFAK Unmodified 883.44397 0.44396847 473 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 52.308 52.481 2 0.0066692 14430 20211116_3434_TMUAki_TMT10x_P_F6 111.01 50.22 20534000 30981000 357430 40708000 38687000 28541000 21917000 28531000 33316000 23141000 31615000 19122000 28945000 2284400 40660000 36695000 29826000 23461000 28847000 33334000 22822000 30551000 3 3 2 3 3 3 3 3 3 3 3 7363900 10874000 341830 14951000 26950000 18619000 10748000 10042000 11967000 8489000 11172000 6859000 10162000 1203400 15019000 25454000 18549000 11787000 10597000 12093000 8354800 10802000 1 1 1 1 1 1 1 1 1 1 1 13170000 20107000 15597 25757000 11737000 9921700 11169000 18488000 21348000 14652000 20443000 12263000 18783000 1081000 25641000 11241000 11277000 11674000 18250000 21241000 14468000 19749000 2 2 1 2 2 2 2 2 2 2 2 1117900000 456490000 661450000 4453 473 4161 24961;24962;24963;24964;24965 30034;30035;30036;30037;30038 30036 5 ELPAAVAPAGPASLAR Unmodified 1489.8253 0.8252771 422 O95336 PGLS 6-phosphogluconolactonase yes yes 0 0 0 0 By MS/MS By MS/MS 5.8 0.4 1 4 2 3 53.788 53.885 2;3 8.1603E-21 15433 20211116_3445_TMUAki_TMT10x_S_F6 164.21 62.731 7666000 12099000 98365 15039000 13070000 14804000 9611500 10685000 10696000 9847300 11092000 7138500 11301000 798600 15131000 12451000 15003000 9963800 11046000 10848000 9651900 10688000 3 3 2 3 3 3 3 3 3 3 3 5236200 8213000 86578 9862500 10771000 12736000 7718700 7185400 6689100 6573300 7317000 4876100 7669800 588010 9987800 10256000 12673000 7957200 7567400 6872300 6445000 7039000 2 2 1 2 2 2 2 2 2 2 2 2429700 3885900 11786 5176900 2299100 2068200 1892800 3499300 4006800 3274000 3774700 2262400 3630800 210600 5143600 2194900 2330800 2006700 3478900 3975500 3206900 3648500 1 1 1 1 1 1 1 1 1 1 1 1099900000 546130000 553750000 4454 422 4162 24966;24967;24968;24969;24970 30039;30040;30041;30042;30043 30042 5 ELPADLAR Unmodified 883.47633 0.47633123 2188 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 0 0 0 0 By MS/MS 3 0 1 1 40.335 40.388 2 0.025406 12029 20211116_3430_TMUAki_TMT10x_P_F3 66.799 36.187 232980 397240 2982.4 404680 526960 490810 304810 279250 259490 244490 317470 216950 370700 26213 413600 499870 489940 319390 293560 268030 240220 304460 1 1 1 1 1 1 1 1 1 1 1 232980 397240 2982.4 404680 526960 490810 304810 279250 259490 244490 317470 216950 370700 26213 413600 499870 489940 319390 293560 268030 240220 304460 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11563000 11563000 0 4455 2188 4163 24971 30044 30044 1 ELPDLEDLMK Oxidation (M) 1217.585 0.58495498 2862 Q9HC38-2;Q9HC38 GLOD4 Glyoxalase domain-containing protein 4 yes no 0 0 1 0 By MS/MS 4 0 1 1 67.013 67.101 3 0.0019345 21388 20211116_3431_TMUAki_TMT10x_P_F4 68.893 47.429 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4456 2862 4164 24972 30045 30045 2985 1 ELPDPQESIQR Unmodified 1310.6466 0.64664404 49 CON__Q29443;CON__Q0IIK2 yes no 0 0 0 0 By MS/MS 3 0 1 1 41.72 41.774 2 2.4262E-05 12537 20211116_3430_TMUAki_TMT10x_P_F3 108.31 80.079 + 406330 533740 1569.9 764410 1257100 1010100 620130 567500 699260 530640 608570 378350 498900 47067 767210 1189500 1003900 664780 598230 704690 519770 589880 1 1 1 1 1 1 1 1 1 1 1 406330 533740 1569.9 764410 1257100 1010100 620130 567500 699260 530640 608570 378350 498900 47067 767210 1189500 1003900 664780 598230 704690 519770 589880 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 49498000 49498000 0 4457 49 4165 24973 30046 30046 1 ELPELLQR Unmodified 996.5604 0.56039521 2301 Q8WUM4;Q8WUM4-2 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 By MS/MS 4 0 1 1 54.747 54.762 2 0.017964 16778 20211116_3442_TMUAki_TMT10x_S_F4 69.984 43.101 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4458 2301 4166 24974 30047 30047 1 ELPESGIQLGTPR Unmodified 1395.7358 0.73579339 3127;3128 Q9UI10;Q9UI10-2;Q9UI10-3 EIF2B4 Translation initiation factor eIF-2B subunit delta no no 0 0 0 0 By MS/MS 4 0 1 1 51.339 51.446 2 0.0003749 15403 20211116_3442_TMUAki_TMT10x_S_F4 84.06 43.993 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4459 3127;3128 4167 24975 30048 30048 1 ELPEYYELIR Unmodified 1323.6711 0.67106787 1154 P51532-5;P51532-2;P51532-3;P51532-4;P51532;P51531;P51531-2 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 yes no 0 0 0 0 By MS/MS By MS/MS 3 0.894 2 1 2 3 2 67.152 66.937 2 9.3371E-09 24078 20211116_3441_TMUAki_TMT10x_S_F3 175.91 123.51 11313000 19838000 97903 18998000 12667000 19596000 13735000 11648000 11460000 12220000 14368000 10535000 18508000 1046500 19450000 12179000 19748000 13805000 12261000 11861000 11911000 13770000 3 3 2 3 3 3 3 3 3 3 3 8040900 14158000 97903 13377000 9250200 16231000 9965000 8553500 8121600 8710700 10317000 7487600 13208000 774820 13745000 8893500 16187000 10014000 9088800 8420900 8500900 9884100 2 2 2 2 2 2 2 2 2 2 2 3272500 5680500 0 5621400 3417100 3364800 3769700 3094800 3338000 3509600 4051600 3047000 5300300 271690 5705200 3285300 3561000 3792000 3172600 3440100 3410500 3886300 1 1 0 1 1 1 1 1 1 1 1 2275500000 947580000 1327900000 4460 1154 4168 24976;24977;24978;24979;24980 30049;30050;30051;30052 30052 4 ELPGHTGYLSCCR Unmodified 1548.6813 0.68133176 1377 P62879;Q9HAV0;P62879-2 GNB2;GNB4 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein subunit beta-4 yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 34.649 34.714 3 7.1961E-12 8679 20211116_3433_TMUAki_TMT10x_P_F5 149.69 124.9 1231100 1934100 20929 2422500 2373300 2001500 1465800 1374800 1302100 1141800 1569800 1146400 1806500 135520 2430500 2253900 2050900 1529200 1422400 1341400 1124700 1506000 2 2 1 2 2 2 2 2 2 2 2 714370 1149400 20929 1354700 1904400 1668500 1099900 909800 889980 676020 977180 665310 1073300 95398 1372200 1807000 1663300 1151200 956320 917680 669870 939950 1 1 1 1 1 1 1 1 1 1 1 516760 784650 0 1067800 468920 333020 365870 464960 412150 465770 592610 481140 733220 40126 1058400 446900 387550 377940 466100 423670 454870 566090 1 1 0 1 1 1 1 1 1 1 1 141140000 105190000 35959000 4461 1377 4169 24981;24982 30053;30054 30053 2 ELPKVPTHVPVCVLGNYR Unmodified 2077.1143 0.11426526 1887 Q3YEC7;Q3YEC7-2;Q3YEC7-4;Q3YEC7-5;Q3YEC7-6;Q3YEC7-3 RABL6 Rab-like protein 6 yes no 0 0 0 1 By MS/MS 2 0 1 1 55.828 55.622 4 0.00028638 16629 20211116_3440_TMUAki_TMT10x_S_F2 69.522 58.263 1510800 2788000 61975 2820600 1809000 1632900 1540900 2302300 2049400 1896300 2299200 1407200 2601600 187190 2857400 1731600 1751800 1592800 2294900 2071600 1868800 2210200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1510800 2788000 61975 2820600 1809000 1632900 1540900 2302300 2049400 1896300 2299200 1407200 2601600 187190 2857400 1731600 1751800 1592800 2294900 2071600 1868800 2210200 1 1 1 1 1 1 1 1 1 1 1 308380000 0 308380000 4462 1887 4170 24983 30055 30055 1 ELPPDQAEYCIAR Unmodified 1560.7242 0.72424243 235;644 O43707;O43707-2;O43707-3;P12814;P12814-2;P12814-3;P12814-4 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 no no 0 0 0 0 By MS/MS 3 0 1 1 47.387 47.039 2 1.6236E-12 15920 20211116_3441_TMUAki_TMT10x_S_F3 138.45 116.36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4463 235;644 4171 24984 30056 30056 1 ELPQFATGENLPR Unmodified 1470.7467 0.74669243 2744 Q9BZZ5-2;Q9BZZ5;Q9BZZ5-3;Q9BZZ5-6;Q9BZZ5-5;Q9BZZ5-1 API5 Apoptosis inhibitor 5 yes no 0 0 0 0 By MS/MS By MS/MS 4.4 0.663 1 4 5 6 4 56.327 56.427 2;3 3.3787E-25 16960 20211116_3431_TMUAki_TMT10x_P_F4 226.04 170.36 20978000 36830000 107100 39932000 26485000 28140000 21881000 32700000 33262000 28626000 31887000 19532000 34378000 1621500 40342000 25277000 29497000 22788000 32895000 33291000 28125000 30803000 9 9 4 9 9 9 9 9 9 9 9 6396900 10462000 27626 11831000 11668000 15756000 9524800 9201200 9715600 8317800 9094600 5956100 9767400 594450 12032000 11133000 15662000 9779300 9659500 9853600 8160000 8792500 3 3 1 3 3 3 3 3 3 3 3 14581000 26368000 79478 28100000 14818000 12384000 12356000 23499000 23546000 20308000 22792000 13576000 24610000 1027000 28310000 14144000 13836000 13009000 23236000 23438000 19965000 22010000 6 6 3 6 6 6 6 6 6 6 6 6863200000 3382200000 3481000000 4464 2744 4172 24985;24986;24987;24988;24989;24990;24991;24992;24993;24994 30057;30058;30059;30060;30061;30062;30063;30064;30065;30066;30067;30068 30058 12 ELPQVSFVK Unmodified 1045.5808 0.5807963 376 O76003 GLRX3 Glutaredoxin-3 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.707 2 4 2 2 6 59.435 59.696 2 3.2918E-05 4947 20211116_3447_TMUAki_TMT10x_S_F8 119.68 46.42 18060000 28610000 162740 31029000 28385000 30707000 21094000 19448000 19604000 18860000 24509000 16816000 26705000 1644400 31479000 27033000 31049000 21731000 20324000 20183000 18444000 23491000 5 5 3 5 5 5 5 5 5 5 5 12496000 19506000 115910 21280000 23069000 25989000 16382000 13414000 13888000 12932000 16895000 11635000 18208000 1144000 21654000 21949000 25903000 16890000 14259000 14345000 12650000 16205000 2 2 1 2 2 2 2 2 2 2 2 5564000 9103900 46832 9749000 5315100 4718000 4711400 6033900 5715700 5928200 7614000 5180900 8497300 500340 9824700 5084000 5146300 4841600 6065300 5838100 5794100 7286200 3 3 2 3 3 3 3 3 3 3 3 2339600000 1344200000 995380000 4465 376 4173 24995;24996;24997;24998;24999;25000;25001;25002 30069;30070;30071;30072;30073;30074;30075 30075 7 ELPQVSFVKLEAEGVPEVSEK Unmodified 2313.2104 0.21039329 376 O76003 GLRX3 Glutaredoxin-3 yes yes 0 0 0 1 By MS/MS 4 0 1 1 74.556 74.445 4 0.00011315 24856 20211116_3442_TMUAki_TMT10x_S_F4 67.413 57.755 1233500 2157600 32818 2056900 1862500 1380400 1446400 1374700 1295000 1322300 1700600 1148700 2012900 141660 2095400 1777400 1447800 1484200 1396500 1338400 1293600 1628000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1233500 2157600 32818 2056900 1862500 1380400 1446400 1374700 1295000 1322300 1700600 1148700 2012900 141660 2095400 1777400 1447800 1484200 1396500 1338400 1293600 1628000 1 1 1 1 1 1 1 1 1 1 1 177810000 0 177810000 4466 376 4174 25003 30076 30076 1 ELPRDFPYEEDSRPR Unmodified 1904.9017 0.90168952 2495 Q96I25 RBM17 Splicing factor 45 yes yes 0 0 0 2 By MS/MS By MS/MS 2.75 0.829 2 1 1 1 3 40.256 40.176 4 1.0871E-33 13192 20211116_3441_TMUAki_TMT10x_S_F3 232.26 208.54 3155300 4573100 33766 5585100 4195700 3436500 2923700 3774600 4072100 3417800 4402900 2938100 4271000 304610 5594100 3992900 3641000 3067700 3810000 4104100 3352700 4237000 5 5 4 5 5 5 5 5 5 5 5 1005300 1375000 15847 1690300 2412800 1919000 1308800 1271900 1428900 1135800 1519200 936190 1284200 117830 1705600 2286700 1926300 1389000 1321800 1451700 1114900 1462700 1 1 1 1 1 1 1 1 1 1 1 2149900 3198100 17920 3894800 1782800 1517500 1614900 2502600 2643100 2282000 2883600 2001900 2986800 186780 3888600 1706100 1714700 1678700 2488200 2652500 2237800 2774300 4 4 3 4 4 4 4 4 4 4 4 367010000 112930000 254080000 4467 2495 4175 25004;25005;25006;25007 30077;30078;30079;30080;30081 30079 5 ELPTEPPYTAYVGNLPFNTVQGDIDAIFK Unmodified 3208.5968 0.59684688 1765 Q15056-2;Q15056 EIF4H Eukaryotic translation initiation factor 4H yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 82.222 82.23 3 1.9117E-18 27632 20211116_3431_TMUAki_TMT10x_P_F4 129.27 120.28 706390 1206200 38911 1047400 738170 1387000 962420 622350 715610 699620 811840 658010 1124900 95274 1084800 715780 1374900 956860 673660 742230 680100 780170 1 1 1 1 1 1 1 1 1 1 1 706390 1206200 38911 1047400 738170 1387000 962420 622350 715610 699620 811840 658010 1124900 95274 1084800 715780 1374900 956860 673660 742230 680100 780170 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 201930000 201930000 0 4468 1765 4176 25008;25009 30082;30083 30082 2 ELPTVVFR Unmodified 959.54402 0.54401687 2698 Q9BVP2;Q9BVP2-2 GNL3 Guanine nucleotide-binding protein-like 3 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 56.693 56.765 2 0.0026237 16582 20211116_3445_TMUAki_TMT10x_S_F6 107.29 61.901 4096900 6775400 0 7266900 4041200 3397400 3395900 5243500 4636300 4876200 5189600 3814600 6324000 328300 7320800 3858000 3741200 3516800 5227100 4682000 4777500 4989100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4096900 6775400 0 7266900 4041200 3397400 3395900 5243500 4636300 4876200 5189600 3814600 6324000 328300 7320800 3858000 3741200 3516800 5227100 4682000 4777500 4989100 1 1 0 1 1 1 1 1 1 1 1 305020000 0 305020000 4469 2698 4177 25010;25011 30084;30085 30085 2 ELPVNAQNYVR Unmodified 1301.6728 0.67279921 874 P30520 ADSS Adenylosuccinate synthetase isozyme 2 yes yes 0 0 0 0 By MS/MS 5 0 2 2 47.098 47.262 2 9.1039E-15 12459 20211116_3444_TMUAki_TMT10x_S_F5 166.34 131.95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4470 874 4178 25012;25013 30086;30087 30087 2 ELQAQIAELQEDFESEK Unmodified 2005.948 0.94803059 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS By MS/MS 2 0.796 12 18 10 1 28 13 50.436 50.382 2;3 4.3814E-60 25956 20211116_3428_TMUAki_TMT10x_P_F1 281.94 263.81 40311000 67044000 444280 62339000 48077000 58306000 52171000 38137000 37071000 42318000 51283000 37536000 62541000 3793600 63868000 46224000 59194000 52238000 39918000 38878000 41157000 49031000 22 23 13 23 23 23 23 23 23 22 23 18502000 29949000 237820 28022000 17245000 32588000 22338000 17131000 16481000 19387000 22658000 17228000 27939000 1691400 28791000 16675000 32570000 22210000 18265000 17242000 18841000 21666000 14 15 7 15 15 15 15 15 15 14 15 21809000 37094000 206460 34318000 30832000 25718000 29833000 21006000 20589000 22931000 28625000 20307000 34603000 2102100 35077000 29549000 26624000 30027000 21653000 21636000 22316000 27365000 8 8 6 8 8 8 8 8 8 8 8 15687000000 9501700000 6184800000 4471 935 4179 25014;25015;25016;25017;25018;25019;25020;25021;25022;25023;25024;25025;25026;25027;25028;25029;25030;25031;25032;25033;25034;25035;25036;25037;25038;25039;25040;25041;25042;25043;25044;25045;25046;25047;25048;25049;25050;25051;25052;25053;25054 30088;30089;30090;30091;30092;30093;30094;30095;30096;30097;30098;30099;30100;30101;30102;30103;30104;30105;30106;30107;30108;30109;30110;30111;30112;30113;30114;30115;30116;30117;30118;30119;30120;30121;30122;30123;30124;30125;30126;30127 30088 40 ELQCLTPR Unmodified 1015.5121 0.51206481 1550 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.17 1.07 2 2 1 1 2 4 38.67 38.713 2 0.014288 10677 20211116_3430_TMUAki_TMT10x_P_F3 78.113 42.675 1973000 3108100 44631 3721300 2447900 2054500 2203100 2132700 2341700 1922900 2857600 1837400 2902500 207780 3728100 2343400 2197600 2251800 2158100 2394500 1886600 2740600 5 5 3 5 5 5 5 5 5 5 5 290980 467820 3819 577470 862170 642910 413090 336020 367590 311030 434440 270940 436930 33340 582350 815480 644020 441090 356390 378320 304800 417020 2 2 1 2 2 2 2 2 2 2 2 1682000 2640300 40812 3143800 1585700 1411600 1790000 1796700 1974100 1611800 2423100 1566400 2465500 174440 3145700 1528000 1553600 1810700 1801800 2016200 1581800 2323600 3 3 2 3 3 3 3 3 3 3 3 202280000 17669000 184610000 4472 1550 4180 25055;25056;25057;25058;25059;25060 30128;30129;30130;30131;30132 30128 5 ELQEESGLTVDALHK Unmodified 1667.8366 0.83662965 954 P36639;P36639-4;P36639-3;P36639-2 NUDT1 7,8-dihydro-8-oxoguanine triphosphatase yes no 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 52.368 52.268 3 4.0005E-30 15747 20211116_3442_TMUAki_TMT10x_S_F4 207.39 179.1 15277000 24325000 195540 26236000 22483000 26527000 17338000 20491000 19743000 17539000 21211000 14226000 22705000 1549800 26635000 21440000 26870000 17930000 21050000 20032000 17251000 20416000 6 6 6 6 6 6 6 6 6 6 6 10715000 16289000 120670 17439000 17658000 22094000 12947000 13977000 13388000 11853000 14676000 9977600 15204000 1098100 17779000 16820000 22039000 13393000 14557000 13646000 11664000 14117000 4 4 4 4 4 4 4 4 4 4 4 4562500 8035400 74863 8797000 4824400 4432700 4391000 6513400 6355400 5685800 6535500 4248700 7500700 451700 8855300 4619500 4831700 4537500 6492600 6385900 5587200 6299000 2 2 2 2 2 2 2 2 2 2 2 1987800000 1234700000 753130000 4473 954 4181 25061;25062;25063;25064;25065 30133;30134;30135;30136;30137;30138 30138 6 ELQEGTYVMVAGPSFETVAECR Oxidation (M) 2488.125 0.12502546 469 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 1 0 By MS/MS By MS/MS 2 0.816 1 1 1 1 2 66.687 66.442 3 2.1692E-10 21033 20211116_3440_TMUAki_TMT10x_S_F2 103.84 93.7 12129000 21702000 98697 19949000 14076000 16381000 14524000 11799000 10536000 11724000 14845000 11293000 20244000 962310 20421000 13504000 16805000 14585000 12226000 11046000 11453000 14187000 8 8 4 8 8 8 8 8 8 8 8 4607300 7847000 67748 7198100 4879500 8744000 5277900 5074300 4699300 4809200 5900200 4290300 7319600 442340 7412200 4692400 8730000 5314900 5336500 4848700 4707900 5654500 4 4 3 4 4 4 4 4 4 4 4 7521700 13855000 30949 12751000 9196700 7636800 9245700 6724800 5836800 6914300 8945200 7002400 12925000 519970 13009000 8811200 8074800 9270200 6889000 6197400 6745100 8532900 4 4 1 4 4 4 4 4 4 4 4 1296900000 550410000 746530000 4474 469 4182 25066;25067;25068 30139;30140;30141;30142;30143;30144;30145;30146 30145 356 8 ELQELNELFKPVVAAQK Unmodified 1955.0728 0.072777598 2294 Q8WU90 ZC3H15 Zinc finger CCCH domain-containing protein 15 yes yes 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 77.463 77.454 3 4.9615E-11 26730 20211116_3435_TMUAki_TMT10x_P_F7 132.47 114.33 8677300 14377000 179620 12592000 8871600 12444000 9897300 7329600 7894300 8370800 9844700 8080800 13409000 889530 12970000 8543200 12572000 9923600 7741500 8187900 8132500 9436500 2 2 2 2 2 2 2 2 2 2 2 4522200 7450600 140400 6284100 4363400 7428000 5285600 3849100 4179900 4222600 5090200 4211600 6947800 503540 6510300 4215500 7416200 5279000 4105300 4333000 4108600 4882100 1 1 1 1 1 1 1 1 1 1 1 4155200 6926600 39224 6308300 4508200 5016300 4611600 3480400 3714400 4148200 4754500 3869200 6461000 385990 6459800 4327600 5155400 4644600 3636200 3854900 4023900 4554300 1 1 1 1 1 1 1 1 1 1 1 7581500000 1217300000 6364100000 4475 2294 4183 25069;25070;25071 30147;30148 30147 2 ELQELQDSLNAEREK Unmodified 1800.8854 0.88537076 641 P12270 TPR Nucleoprotein TPR yes yes 0 0 0 1 By MS/MS 3 0 1 1 55.465 55.269 3 4.616E-10 18207 20211116_3430_TMUAki_TMT10x_P_F3 118.62 105.45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4476 641 4184 25072 30149 30149 1 ELQELVQYPVEHPDK Unmodified 1822.9101 0.91012895 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 By MS/MS By MS/MS 3.88 1.11 2 4 5 4 1 9 7 58.166 58.098 2;3;4 3.027E-14 18135 20211116_3442_TMUAki_TMT10x_S_F4 143.88 116.54 56994000 103750000 615330 107470000 89564000 115220000 73677000 80212000 81882000 75915000 80901000 53069000 96824000 5133000 109490000 85497000 116120000 75818000 83192000 82907000 74319000 78072000 16 16 9 16 16 16 16 16 16 16 16 37942000 68198000 450030 71021000 71254000 97533000 58395000 53222000 54330000 50233000 52669000 35330000 63647000 3885200 72650000 68016000 96729000 59779000 56259000 55391000 49183000 50859000 10 10 7 10 10 10 10 10 10 10 10 19052000 35552000 165300 36447000 18310000 17690000 15281000 26991000 27551000 25682000 28232000 17739000 33177000 1247800 36838000 17481000 19387000 16039000 26934000 27516000 25136000 27213000 6 6 2 6 6 6 6 6 6 6 6 28396000000 16862000000 11534000000 4477 1235 4185 25073;25074;25075;25076;25077;25078;25079;25080;25081;25082;25083;25084;25085;25086;25087;25088 30150;30151;30152;30153;30154;30155;30156;30157;30158;30159;30160;30161;30162;30163;30164;30165;30166 30163 17 ELQHAALGGTATR Unmodified 1323.6895 0.6895119 138 O14828;O14828-2 SCAMP3 Secretory carrier-associated membrane protein 3 yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 30.402 30.386 3 8.0935E-05 6527 20211116_3431_TMUAki_TMT10x_P_F4 93.237 71.842 964130 1612000 9830 1397000 1637900 1928700 1163800 999570 1041600 957600 1247400 897770 1503400 98531 1448300 1559200 1911100 1201500 1061900 1072300 936970 1197000 3 3 3 3 3 3 3 3 3 3 3 964130 1612000 9830 1397000 1637900 1928700 1163800 999570 1041600 957600 1247400 897770 1503400 98531 1448300 1559200 1911100 1201500 1061900 1072300 936970 1197000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 79871000 79871000 0 4478 138 4186 25089;25090 30167;30168;30169 30168 3 ELQQAQTTRPESTQIQPQPGFCIK Unmodified 2784.3865 0.38647695 2987 Q9NWS0;Q9NWS0-3 PIH1D1 PIH1 domain-containing protein 1 yes no 0 0 0 1 By MS/MS By matching 6.33 0.471 2 1 2 1 50.808 51.114 4 1.2256E-11 15770 20211116_3435_TMUAki_TMT10x_P_F7 116.94 95.735 4351100 7118700 17590 7797600 8250500 11335000 6273500 6789700 7071000 6384200 6364800 4051200 6645000 396480 7959800 7860000 11227000 6491500 7120500 7133500 6251800 6161800 3 3 2 3 3 3 3 3 3 3 3 4351100 7118700 17590 7797600 8250500 11335000 6273500 6789700 7071000 6384200 6364800 4051200 6645000 396480 7959800 7860000 11227000 6491500 7120500 7133500 6251800 6161800 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 920580000 771680000 148900000 4479 2987 4187 25091;25092;25093 30170;30171;30172 30171 3 ELQREPLTPEEVQSVR Unmodified 1908.9905 0.99050453 1972 Q6FI81;Q6FI81-3 CIAPIN1 Anamorsin yes no 0 0 0 1 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 39.693 39.636 3 1.7615E-52 10875 20211116_3440_TMUAki_TMT10x_S_F2 261.17 208.79 13751000 23063000 261570 27657000 26371000 28482000 16515000 17938000 19203000 15220000 19669000 12806000 21538000 1490100 27903000 25053000 28728000 17350000 18689000 19435000 14977000 18959000 14 14 10 14 14 14 14 14 14 14 14 10291000 17071000 242750 20370000 23761000 25874000 14486000 13220000 14351000 11255000 14618000 9584000 15942000 1264600 20630000 22565000 25735000 15175000 14021000 14615000 11073000 14094000 8 8 7 8 8 8 8 8 8 8 8 3460200 5992100 18817 7287600 2609700 2607800 2028400 4718100 4852400 3965300 5050300 3221800 5596100 225480 7273100 2487900 2992800 2175300 4668000 4820000 3903700 4865800 6 6 3 6 6 6 6 6 6 6 6 3540900000 2311500000 1229400000 4480 1972 4188 25094;25095;25096;25097;25098;25099;25100;25101 30173;30174;30175;30176;30177;30178;30179;30180;30181;30182;30183;30184;30185;30186 30182 14 ELQSLLVEER Unmodified 1214.6507 0.65066678 946 P36404 ARL2 ADP-ribosylation factor-like protein 2 yes yes 0 0 0 0 By MS/MS 3 0 1 1 58.136 57.734 2 0.000159 20288 20211116_3441_TMUAki_TMT10x_S_F3 91.313 55.37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4481 946 4189 25102 30187 30187 1 ELQTLHNLR Unmodified 1122.6146 0.61455605 906;262 O60282;Q12840;O60282-2;P33176 KIF5C;KIF5A;KIF5B Kinesin heavy chain isoform 5C;Kinesin heavy chain isoform 5A;Kinesin-1 heavy chain no no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 34.082 34.147 3 0.00025476 7064 20211116_3444_TMUAki_TMT10x_S_F5 114.97 70.619 1426000 2253700 30116 2407000 2319400 2367800 1783200 1473000 1479400 1430800 1794600 1328000 2103500 158810 2444100 2212300 2394500 1827400 1541500 1529500 1399200 1721400 2 2 2 2 2 2 2 2 2 2 2 1051300 1677900 14824 1753100 1921700 1987000 1292700 1031200 1047700 1022900 1276600 978980 1565900 113170 1786700 1827700 1988300 1336600 1096400 1084700 999390 1224400 1 1 1 1 1 1 1 1 1 1 1 374740 575820 15292 653870 397720 380790 490510 441810 431690 407910 517990 349030 537590 45642 657460 384610 406140 490870 445100 444800 399790 497010 1 1 1 1 1 1 1 1 1 1 1 65574000 47524000 18050000 4482 262;906 4190 25103;25104 30188;30189 30189 2 ELRAEAER Unmodified 972.49886 0.49885759 1741 Q14980;Q14980-2;Q14980-4;Q14980-3;Q14980-5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 1 By MS/MS 3 0 1 1 26.286 25.993 3 0.053376 7510 20211116_3441_TMUAki_TMT10x_S_F3 55.112 1.6182 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4483 1741 4191 25105 30190 30190 1 ELRDEEQTAESIK Unmodified 1546.7475 0.74748029 1716 Q14566 MCM6 DNA replication licensing factor MCM6 yes yes 0 0 0 1 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 40.155 40.033 3 1.8021E-09 12005 20211116_3439_TMUAki_TMT10x_S_F1 134.88 105.34 4398300 6841000 120580 10035000 9772500 5510900 5101200 3267000 4296100 2937300 6137800 4096200 6395400 552300 9944400 9260200 5842800 5393700 3425000 4471100 2882300 5863900 4 4 4 4 4 4 4 4 4 4 4 1873300 3001000 22282 4237500 7557200 3821100 2559700 1302800 1839300 1113500 2452700 1744400 2804800 255680 4229300 7121900 3861800 2835400 1446000 1924500 1095300 2347100 1 1 1 1 1 1 1 1 1 1 1 2525000 3840100 98300 5797800 2215300 1689800 2541500 1964200 2456800 1823800 3685100 2351800 3590500 296620 5715000 2138300 1981100 2558300 1979000 2546600 1787000 3516800 3 3 3 3 3 3 3 3 3 3 3 328500000 233070000 95431000 4484 1716 4192 25106;25107;25108;25109;25110 30191;30192;30193;30194 30192 4 ELRENTQTTIK Unmodified 1331.7045 0.70449327 1329;1330 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 1 By MS/MS By MS/MS 3.5 1.12 1 1 1 1 3 1 32.314 32.19 3 5.6047E-16 7567 20211116_3433_TMUAki_TMT10x_P_F5 204.01 163.13 9013900 13455000 94516 15474000 11656000 10642000 8128200 4070000 5556300 4811600 8989900 8393300 12563000 840590 15571000 11092000 10992000 8349600 4491900 5887000 4668700 8565900 4 4 2 4 4 4 4 4 4 4 4 7920200 11588000 86831 13590000 10493000 9795300 6965800 3331400 4640200 3962000 7700300 7374900 10820000 748710 13666000 9976200 10068000 7178100 3732200 4930900 3843500 7333500 2 2 1 2 2 2 2 2 2 2 2 1093700 1867700 7685.2 1884000 1163400 846550 1162400 738590 916150 849570 1289500 1018400 1742900 91885 1905400 1115500 923970 1171500 759720 956050 825160 1232400 2 2 1 2 2 2 2 2 2 2 2 864190000 774630000 89557000 4485 1329;1330 4193 25111;25112;25113;25114 30195;30196;30197;30198 30196 4 ELREPQFR Unmodified 1073.5618 0.56179219 2370 Q92878;Q92878-2;Q92878-3 RAD50 DNA repair protein RAD50 yes no 0 0 0 1 By MS/MS 4 0 1 1 33.384 33.41 3 0.00024179 7734 20211116_3431_TMUAki_TMT10x_P_F4 140.14 52.663 727270 1055800 10056 1221400 1893900 1602300 977840 904200 882500 848800 1076600 677240 985820 86007 1240000 1793500 1593100 1036800 952900 908850 831260 1032500 1 1 1 1 1 1 1 1 1 1 1 727270 1055800 10056 1221400 1893900 1602300 977840 904200 882500 848800 1076600 677240 985820 86007 1240000 1793500 1593100 1036800 952900 908850 831260 1032500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50859000 50859000 0 4486 2370 4194 25115 30199 30199 1 ELRPQGSARPQPDPNAEFDPDLPGGGLHR Unmodified 3122.5282 0.52820724 96 O00488 ZNF593 Zinc finger protein 593 yes yes 0 0 0 2 By matching By MS/MS 4.33 0.471 2 1 1 2 42.913 43.058 5 3.0156E-09 11880 20211116_3442_TMUAki_TMT10x_S_F4 90.974 83.352 889860 1380500 0 1840900 551750 473020 474160 845800 819480 715440 1076100 828540 1289900 68183 1825000 527040 574630 495710 837230 827670 704110 1030200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 889860 1380500 0 1840900 551750 473020 474160 845800 819480 715440 1076100 828540 1289900 68183 1825000 527040 574630 495710 837230 827670 704110 1030200 1 1 0 1 1 1 1 1 1 1 1 1380900000 797010000 583850000 4487 96 4195 25116;25117;25118 30200 30200 1 ELSALVK Unmodified 758.4538 0.45380487 3256 Q9Y2Z0;Q9Y2Z0-2 SUGT1 Suppressor of G2 allele of SKP1 homolog yes no 0 0 0 0 By MS/MS 5 0 1 1 50.058 50.242 2 0.025047 13890 20211116_3444_TMUAki_TMT10x_S_F5 82.671 21.699 2794800 4563500 10709 4858400 2726700 2548700 2782300 3478700 3424100 3281200 3853100 2602300 4259400 240730 4901000 2616600 2759800 2839100 3484100 3470600 3212700 3703700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2794800 4563500 10709 4858400 2726700 2548700 2782300 3478700 3424100 3281200 3853100 2602300 4259400 240730 4901000 2616600 2759800 2839100 3484100 3470600 3212700 3703700 1 1 1 1 1 1 1 1 1 1 1 391080000 0 391080000 4488 3256 4196 25119 30201 30201 1 ELSAVTFPDIIR Unmodified 1359.7398 0.73981614 1008 P42224;P42224-2 STAT1 Signal transducer and activator of transcription 1-alpha/beta yes no 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 3 1 74.119 74.127 2 4.4217E-13 23417 20211116_3444_TMUAki_TMT10x_S_F5 179.42 137.13 6638600 10315000 52198 9819500 6781000 10354000 7088200 7278800 7139600 7336600 8386900 6181600 9622800 601030 10061000 6512800 10446000 7175400 7557500 7305300 7162900 8051900 3 3 3 3 3 3 3 3 3 3 3 4572900 6725300 31850 6626300 4041500 7897300 4745600 4657100 4567600 4625200 5743200 4258100 6275000 401370 6785900 3894800 7894000 4771300 4897600 4696300 4518500 5503800 2 2 2 2 2 2 2 2 2 2 2 2065700 3589400 20348 3193300 2739500 2457100 2342600 2621700 2571900 2711400 2643700 1923500 3347800 199660 3274600 2618000 2552200 2404100 2659900 2609000 2644400 2548100 1 1 1 1 1 1 1 1 1 1 1 724470000 496740000 227730000 4489 1008 4197 25120;25121;25122;25123 30202;30203;30204 30204 3 ELSDFISYLQR Unmodified 1369.6878 0.68778057 868 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 By MS/MS By MS/MS 7.1 1.18 1 3 4 5 16 22 7 67.916 67.934 2;3 1.4578E-47 25994 20211116_3436_TMUAki_TMT10x_P_F8 301.78 226.56 82064000 138570000 157340 127320000 95562000 126960000 86441000 86834000 87868000 90780000 100610000 76406000 129260000 6527000 130670000 91369000 128460000 88202000 90430000 89780000 88498000 96662000 14 14 5 14 14 14 14 14 14 14 14 44351000 71753000 29064 66186000 46299000 82380000 51626000 45934000 45802000 48802000 53030000 41293000 66933000 3441000 68156000 44510000 82105000 51907000 48628000 47107000 47545000 50932000 8 8 3 8 8 8 8 8 8 8 8 37712000 66820000 128280 61130000 49263000 44583000 34815000 40899000 42066000 41978000 47583000 35112000 62328000 3086000 62517000 46859000 46356000 36294000 41802000 42673000 40953000 45730000 6 6 2 6 6 6 6 6 6 6 6 26149000000 12304000000 13845000000 4490 868 4198 25124;25125;25126;25127;25128;25129;25130;25131;25132;25133;25134;25135;25136;25137;25138;25139;25140;25141;25142;25143;25144;25145;25146;25147;25148;25149;25150;25151;25152 30205;30206;30207;30208;30209;30210;30211;30212;30213;30214;30215;30216;30217;30218;30219;30220;30221;30222;30223;30224;30225;30226;30227;30228;30229;30230;30231 30215 27 ELSDFLR Unmodified 878.44978 0.44978213 3349 Q9Y6E2 BZW2 Basic leucine zipper and W2 domain-containing protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 59.436 59.445 2 0.0073391 18706 20211116_3442_TMUAki_TMT10x_S_F4 134.85 42.532 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4491 3349 4199 25153;25154 30232;30233 30233 2 ELSDIAHR Unmodified 939.47739 0.47739386 482 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 By MS/MS By MS/MS 2.71 1.39 2 1 2 1 1 4 3 31.974 31.872 2;3 0.00044054 9751 20211116_3441_TMUAki_TMT10x_S_F3 126.62 93.781 4140300 6438100 150090 6229700 5042100 6278300 4890400 3638200 4147900 4054400 5223800 3856200 6006600 495780 6370700 4839900 6333600 4945500 3844800 4290500 3942600 5005900 7 7 7 7 7 7 7 7 7 7 7 2358700 3657400 92024 3502400 3153600 4365900 2777200 2091200 2246600 2435600 2989600 2196800 3412100 292450 3596900 3019900 4343300 2820300 2251300 2335100 2364500 2860900 4 4 4 4 4 4 4 4 4 4 4 1781700 2780700 58069 2727200 1888500 1912400 2113200 1547000 1901300 1618800 2234200 1659400 2594500 203330 2773800 1820000 1990300 2125200 1593500 1955400 1578100 2145000 3 3 3 3 3 3 3 3 3 3 3 379880000 196590000 183290000 4492 482 4200 25155;25156;25157;25158;25159;25160;25161 30234;30235;30236;30237;30238;30239;30240 30239 7 ELSDLAR Unmodified 802.41848 0.418482 1291 P61077;P61077-3;P61077-2 UBE2D3 Ubiquitin-conjugating enzyme E2 D3 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 35.684 35.675 2 0.0053451 10130 20211116_3430_TMUAki_TMT10x_P_F3 108.92 0 243230 375390 2074.7 369930 392490 422930 269670 231960 228300 234020 316080 226480 350260 23857 378560 373350 423300 278680 245540 237180 228480 302200 2 2 1 2 2 2 2 2 2 2 2 243230 375390 2074.7 369930 392490 422930 269670 231960 228300 234020 316080 226480 350260 23857 378560 373350 423300 278680 245540 237180 228480 302200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9472300 9472300 0 4493 1291 4201 25162;25163 30241;30242;30243 30242 3 ELSDPAGAIIYTSR Unmodified 1491.7569 0.75692277 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.775 3 4 3 4 6 57.529 57.48 2;3 4.2332E-37 17885 20211116_3442_TMUAki_TMT10x_S_F4 244.71 210.62 32447000 54722000 388060 55641000 39313000 46022000 34024000 41888000 42463000 41006000 45471000 30213000 51065000 3011000 56554000 37577000 47384000 35050000 42771000 42937000 40085000 43771000 10 10 5 10 10 10 10 10 10 10 10 11582000 18787000 71933 19101000 17517000 25788000 14920000 14510000 15500000 13929000 15870000 10784000 17531000 1071800 19564000 16733000 25605000 15287000 15305000 15756000 13627000 15298000 3 3 1 3 3 3 3 3 3 3 3 20866000 35935000 316130 36540000 21796000 20233000 19104000 27378000 26964000 27078000 29601000 19430000 33533000 1939100 36991000 20844000 21779000 19762000 27467000 27181000 26458000 28473000 7 7 4 7 7 7 7 7 7 7 7 4498500000 1986400000 2512000000 4494 157 4202 25164;25165;25166;25167;25168;25169;25170;25171;25172;25173 30244;30245;30246;30247;30248;30249;30250;30251;30252;30253;30254;30255 30251 12 ELSEALTR Unmodified 917.48181 0.48181054 1001 P41250 GARS Glycine--tRNA ligase yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 38.16 38.107 2 0.00048009 10689 20211116_3430_TMUAki_TMT10x_P_F3 163.04 59.288 2020600 3053300 13833 3641300 2348700 2064500 2125800 2882100 2796900 2426900 3143900 1881400 2851200 179430 3649600 2247000 2218800 2188800 2875400 2828300 2389000 3022100 4 4 1 4 4 4 4 4 4 4 4 486940 708210 0 718390 988260 1068100 602270 550060 613100 549040 645910 453350 660880 41820 737380 937520 1054900 631430 585380 624420 536270 622070 3 3 0 3 3 3 3 3 3 3 3 1533600 2345000 13833 2922900 1360500 996380 1523600 2332000 2183800 1877900 2498000 1428000 2190300 137610 2912200 1309400 1163900 1557300 2290000 2203900 1852700 2400000 1 1 1 1 1 1 1 1 1 1 1 115090000 97268000 17825000 4495 1001 4203 25174;25175;25176;25177 30256;30257;30258;30259;30260 30258 5 ELSEQIQR Unmodified 1001.5142 0.5141733 682 P15311 EZR Ezrin yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 33.218 32.996 2 0.00044665 8707 20211116_3429_TMUAki_TMT10x_P_F2 151.5 78.172 532030 964390 6677.3 964610 1093100 1138000 723870 596450 696260 565570 786130 495420 899880 58190 986630 1039200 1136400 752700 632830 712720 553630 755570 1 1 1 1 1 1 1 1 1 1 1 532030 964390 6677.3 964610 1093100 1138000 723870 596450 696260 565570 786130 495420 899880 58190 986630 1039200 1136400 752700 632830 712720 553630 755570 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28917000 28917000 0 4496 682 4204 25178;25179 30261;30262 30261 2 ELSESQVHMMAAAVADGTR 2 Oxidation (M) 2033.9146 0.91463875 1501 Q02952;Q02952-3;Q02952-2 AKAP12 A-kinase anchor protein 12 yes no 0 0 2 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 38.916 38.856 3 0.00013209 12400 20211116_3441_TMUAki_TMT10x_S_F3 70.414 61.621 1119700 1855600 20217 2117700 2469000 2774300 1374000 1728800 2194400 1618000 1821400 1042600 1732400 124380 2151700 2340700 2762200 1476400 1807100 2183300 1584800 1768600 3 3 2 3 3 3 3 3 3 3 3 846860 1385900 20217 1598400 2226000 2492500 1152100 1326800 1736800 1259700 1383000 788660 1293900 108370 1629000 2108700 2457900 1242900 1405900 1728700 1233000 1345100 2 2 2 2 2 2 2 2 2 2 2 272800 469710 0 519270 242930 281730 221940 401940 457640 358360 438380 253950 438470 16016 522690 232010 304360 233520 401290 454570 351790 423480 1 1 0 1 1 1 1 1 1 1 1 468850000 410420000 58425000 4497 1501 4205 25180;25181;25182 30263;30264;30265 30265 2033;2034 3 ELSESQVHMMAAAVADGTR Unmodified 2001.9248 0.92480951 1501 Q02952;Q02952-3;Q02952-2 AKAP12 A-kinase anchor protein 12 yes no 0 0 0 0 By MS/MS By matching 4.25 0.829 1 1 2 3 1 58.831 58.877 3 3.2876E-06 18033 20211116_3431_TMUAki_TMT10x_P_F4 88.755 78.27 5316200 9366200 121990 9546200 7738800 11863000 7397400 7270400 6387400 6734600 7156400 4950800 8740300 588370 9760700 7419100 11839000 7490000 7607700 6569500 6599400 6879700 2 2 2 2 2 2 2 2 2 2 2 5316200 9366200 121990 9546200 7738800 11863000 7397400 7270400 6387400 6734600 7156400 4950800 8740300 588370 9760700 7419100 11839000 7490000 7607700 6569500 6599400 6879700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 774440000 619320000 155110000 4498 1501 4205 25183;25184;25185;25186 30266;30267 30266 2 ELSEYVR Unmodified 894.4447 0.44469675 2052 Q7L1Q6;Q7L1Q6-2;Q7L1Q6-4;Q7L1Q6-3 BZW1 Basic leucine zipper and W2 domain-containing protein 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 38.628 38.671 2 0.058014 11365 20211116_3430_TMUAki_TMT10x_P_F3 64.757 41.234 194340 257620 0 283070 413790 300710 213260 158480 188130 163200 223340 180900 240480 13148 287240 391320 302060 226030 168450 193740 159190 214360 1 1 0 1 1 1 1 1 1 1 1 194340 257620 0 283070 413790 300710 213260 158480 188130 163200 223340 180900 240480 13148 287240 391320 302060 226030 168450 193740 159190 214360 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8904800 8904800 0 4499 2052 4206 25187 30268 30268 1 ELSFGAR Unmodified 778.39735 0.39735263 618 P11172;P11172-2;P11172-3;P11172-4 UMPS Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase yes no 0 0 0 0 By MS/MS 4 0 1 1 38.864 39.045 2 0.058014 10200 20211116_3442_TMUAki_TMT10x_S_F4 64.757 25.095 396120 596170 0 688520 365330 326060 393200 435990 465850 417590 547560 368800 556630 29287 690460 350790 357000 399630 437180 473650 408600 525690 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 396120 596170 0 688520 365330 326060 393200 435990 465850 417590 547560 368800 556630 29287 690460 350790 357000 399630 437180 473650 408600 525690 1 1 0 1 1 1 1 1 1 1 1 28932000 0 28932000 4500 618 4207 25188 30269 30269 1 ELSGTIK Unmodified 746.41742 0.41741937 864 P30050;P30050-2 RPL12 60S ribosomal protein L12 yes no 0 0 0 0 By MS/MS By MS/MS 4.25 0.829 1 1 2 2 2 38.316 38.236 2 0.0075189 9698 20211116_3431_TMUAki_TMT10x_P_F4 101.28 22.669 10157000 15751000 20946 15588000 12955000 15688000 10590000 7718000 8551100 8460600 11917000 9456800 14697000 841390 15915000 12359000 15797000 10803000 8271700 8907900 8232500 11392000 3 3 2 3 3 3 3 3 3 3 3 8946000 13893000 10361 13670000 11812000 14640000 9322600 6574900 7362400 7407900 10396000 8329200 12963000 732080 13976000 11260000 14673000 9525800 7116800 7683400 7200700 9934600 2 2 1 2 2 2 2 2 2 2 2 1211000 1858200 10585 1918000 1142600 1048700 1267900 1143200 1188600 1052600 1521500 1127700 1734200 109310 1939500 1099300 1124100 1277000 1154800 1224500 1031800 1457500 1 1 1 1 1 1 1 1 1 1 1 291850000 253240000 38611000 4501 864 4208 25189;25190;25191;25192 30270;30271;30272;30273 30270 4 ELSHEDLEPPPEHIPPPPRPPK Unmodified 2507.2809 0.28087289 713 P18031 PTPN1 Tyrosine-protein phosphatase non-receptor type 1 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 43.239 43.365 5 8.3461E-15 10905 20211116_3444_TMUAki_TMT10x_S_F5 138.75 130.56 11088000 18864000 227200 20149000 17853000 18535000 12683000 13712000 13852000 10594000 14661000 10326000 17607000 1192900 20441000 17000000 18874000 13172000 14091000 14069000 10475000 14118000 8 8 7 8 8 8 8 8 8 8 8 6958000 11710000 208020 12827000 14403000 15382000 9565900 9086300 9024900 6893900 9431100 6480200 10931000 875000 13045000 13701000 15371000 9939300 9490400 9219400 6823300 9085300 4 4 4 4 4 4 4 4 4 4 4 4130300 7153800 19185 7322300 3450700 3153000 3117200 4625200 4827000 3700200 5230100 3845600 6675900 317920 7395700 3299300 3502300 3232200 4600600 4850100 3652000 5032800 4 4 3 4 4 4 4 4 4 4 4 2410300000 1704100000 706250000 4502 713 4209 25193;25194;25195;25196;25197;25198 30274;30275;30276;30277;30278;30279;30280;30281 30280 8 ELSHEDLEPPPEHIPPPPRPPKR Unmodified 2663.382 0.38198392 713 P18031 PTPN1 Tyrosine-protein phosphatase non-receptor type 1 yes yes 0 0 0 2 By MS/MS By matching 5 0 2 1 1 37.975 38.043 6 2.8337E-15 9950 20211116_3433_TMUAki_TMT10x_P_F5 128.38 119.67 1206800 1998000 0 2302300 3202100 3557500 1916000 1898600 2055800 1790700 1907100 1123500 1865500 116610 2346000 3037200 3509500 2015100 2010900 2080000 1753300 1844300 2 2 0 2 2 2 2 2 2 2 2 1206800 1998000 0 2302300 3202100 3557500 1916000 1898600 2055800 1790700 1907100 1123500 1865500 116610 2346000 3037200 3509500 2015100 2010900 2080000 1753300 1844300 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 469780000 393930000 75859000 4503 713 4210 25199;25200 30282;30283 30283 2 ELSIAIR Unmodified 800.4756 0.47560295 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 46.367 46.416 2 0.0019053 13256 20211116_3442_TMUAki_TMT10x_S_F4 132.09 28.808 24210000 35814000 79748 45929000 39467000 37873000 25687000 22587000 20421000 21505000 29109000 22542000 33456000 2171500 46020000 37493000 38736000 26613000 23704000 21313000 21048000 27811000 7 7 3 7 7 7 7 7 7 7 7 17662000 25734000 0 34353000 33392000 32364000 19353000 15880000 14230000 14796000 21107000 16444000 24044000 1561000 34407000 31656000 32723000 20206000 16945000 14945000 14495000 20148000 4 4 0 4 4 4 4 4 4 4 4 6548000 10081000 79748 11576000 6075200 5509000 6333500 6706900 6190300 6709500 8002500 6097500 9411800 610580 11613000 5836500 6013400 6406400 6758800 6368100 6552700 7663600 3 3 3 3 3 3 3 3 3 3 3 1273600000 690050000 583550000 4504 1433 4211 25201;25202;25203;25204;25205;25206 30284;30285;30286;30287;30288;30289;30290 30289 7 ELSPDIAHLASLK Unmodified 1392.7613 0.76127986 2188 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 0 0 0 0 By MS/MS 6 0 1 1 62.696 62.713 3 0.0015567 18675 20211116_3434_TMUAki_TMT10x_P_F6 68.277 48.439 4695700 7681700 42378 7972000 7200700 9740300 5605600 5308600 5142000 5476700 5752700 4372400 7169000 463880 8138700 6866800 9714100 5755000 5626100 5273000 5341900 5530500 1 1 1 1 1 1 1 1 1 1 1 4695700 7681700 42378 7972000 7200700 9740300 5605600 5308600 5142000 5476700 5752700 4372400 7169000 463880 8138700 6866800 9714100 5755000 5626100 5273000 5341900 5530500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 540940000 540940000 0 4505 2188 4212 25207 30291 30291 1 ELSTTLNADEAVTR Unmodified 1518.7526 0.75256567 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 0 By MS/MS By MS/MS 2.36 0.881 2 4 4 1 4 7 46.381 46.23 2;3 7.3336E-72 14404 20211116_3430_TMUAki_TMT10x_P_F3 327.18 292.98 12674000 20154000 82000 25282000 17947000 17447000 12753000 17465000 18860000 15300000 19119000 11801000 18825000 1149600 25313000 17080000 18257000 13397000 17691000 18928000 15032000 18435000 12 12 6 12 12 12 12 12 12 12 12 5007200 7517100 0 9078700 11576000 11457000 6577500 6293300 7142800 5526500 7040600 4662000 7020100 480390 9187000 10973000 11409000 6950700 6636200 7238200 5429000 6795000 4 4 0 4 4 4 4 4 4 4 4 7666400 12637000 82000 16204000 6370900 5989700 6175700 11171000 11717000 9773200 12078000 7138600 11805000 669240 16126000 6107100 6848400 6446000 11055000 11690000 9602600 11640000 8 8 6 8 8 8 8 8 8 8 8 3646300000 2001800000 1644500000 4506 916 4213 25208;25209;25210;25211;25212;25213;25214;25215;25216;25217;25218 30292;30293;30294;30295;30296;30297;30298;30299;30300;30301;30302;30303 30294 12 ELTAVVQK Unmodified 886.51238 0.51238239 783 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 45.035 45.2 2 0.0019771 11585 20211116_3444_TMUAki_TMT10x_S_F5 117.4 78.436 2563200 4262800 35793 4171700 2314000 2309000 2405000 2646000 3068100 2514300 3433500 2386900 3977300 242370 4234400 2223200 2474700 2455300 2669300 3105200 2461000 3300900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2563200 4262800 35793 4171700 2314000 2309000 2405000 2646000 3068100 2514300 3433500 2386900 3977300 242370 4234400 2223200 2474700 2455300 2669300 3105200 2461000 3300900 1 1 1 1 1 1 1 1 1 1 1 102710000 0 102710000 4507 783 4214 25219;25220;25221 30304;30305;30306 30305 3 ELTAVVQKR Unmodified 1042.6135 0.61349341 783 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 23.888 23.992 3 0.00015239 4076 20211116_3447_TMUAki_TMT10x_S_F8 89.029 34.935 2075200 3003500 0 2869500 3300000 3589300 2222200 1851700 2115200 1860600 2482400 1932200 2802100 184900 2947500 3136800 3573100 2307100 1970600 2169600 1816800 2383300 1 1 0 1 1 1 1 1 1 1 1 2075200 3003500 0 2869500 3300000 3589300 2222200 1851700 2115200 1860600 2482400 1932200 2802100 184900 2947500 3136800 3573100 2307100 1970600 2169600 1816800 2383300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 122300000 122300000 0 4508 783 4215 25222;25223 30307;30308 30308 2 ELTDEEAERLQLEIDQK Unmodified 2058.0117 0.011693483 3226 Q9Y266 NUDC Nuclear migration protein nudC yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 62.836 62.703 3 1.7496E-29 19187 20211116_3428_TMUAki_TMT10x_P_F1 191.47 158.54 12574000 21862000 48553 20205000 15120000 20819000 14693000 16780000 14725000 16039000 16713000 11707000 20394000 1002600 20739000 14482000 21080000 14927000 17242000 15049000 15695000 16061000 2 2 1 2 2 2 2 2 2 2 2 5766700 9533800 48553 8535400 7867900 13063000 8033500 7877000 6810200 7746300 7494300 5369800 8892300 552780 8845800 7551200 12912000 8102200 8266600 7006000 7570800 7208300 1 1 1 1 1 1 1 1 1 1 1 6807700 12328000 0 11670000 7251900 7755300 6659200 8902500 7914800 8292700 9219100 6337700 11501000 449790 11893000 6930700 8167800 6824600 8975300 8043300 8124200 8852900 1 1 0 1 1 1 1 1 1 1 1 2350200000 1533400000 816830000 4509 3226 4216 25224;25225 30309;30310 30309 2 ELTDEEAERLQLEIDQKK Unmodified 2186.1067 0.1066565 3226 Q9Y266 NUDC Nuclear migration protein nudC yes yes 0 0 0 2 By MS/MS By MS/MS 2.67 1.15 2 2 2 3 4 5 59.996 59.823 4 4.1816E-63 17996 20211116_3428_TMUAki_TMT10x_P_F1 263.19 218.26 215540000 351690000 2684500 396280000 272540000 303620000 215180000 171930000 199460000 196400000 248130000 200700000 328330000 19497000 399730000 259930000 312070000 220780000 181890000 205320000 190800000 237860000 16 16 9 16 15 16 16 15 15 16 15 124640000 198360000 2173600 226940000 192060000 235830000 151180000 100860000 115930000 114430000 145420000 116070000 185190000 12734000 229630000 183230000 236660000 154390000 109760000 120530000 111200000 139360000 7 7 5 7 7 7 7 7 7 7 7 90900000 153340000 510920 169340000 80472000 67798000 64009000 71071000 83530000 81963000 102720000 84632000 143140000 6763600 170110000 76708000 75405000 66392000 72125000 84794000 79601000 98492000 9 9 4 9 8 9 9 8 8 9 8 22485000000 11551000000 10934000000 4510 3226 4217 25226;25227;25228;25229;25230;25231;25232;25233;25234 30311;30312;30313;30314;30315;30316;30317;30318;30319;30320;30321;30322;30323;30324;30325;30326 30311 16 ELTEEKESAFEFLSSA Unmodified 1815.8414 0.84144026 988 P40925;P40925-3;P40925-2 MDH1 Malate dehydrogenase, cytoplasmic yes no 0 0 0 1 By MS/MS By MS/MS 2 0.953 4 4 2 1 5 6 72.875 72.825 2;3 3.151E-05 27712 20211116_3439_TMUAki_TMT10x_S_F1 91.076 47.779 22576000 40874000 188030 28840000 35926000 46607000 34870000 39091000 31681000 36654000 36595000 21021000 38095000 2121500 30537000 34425000 46215000 35326000 40051000 32544000 35899000 35149000 7 7 4 7 7 7 7 7 7 7 7 10635000 18680000 91454 13317000 12057000 27761000 16031000 18867000 15149000 17679000 16835000 9902200 17410000 933460 14181000 11663000 27190000 16026000 19596000 15510000 17315000 16188000 4 4 2 4 4 4 4 4 4 4 4 11942000 22194000 96580 15522000 23869000 18846000 18839000 20224000 16532000 18975000 19760000 11119000 20685000 1188000 16356000 22763000 19025000 19301000 20455000 17034000 18584000 18961000 3 3 2 3 3 3 3 3 3 3 3 7321600000 4015000000 3306600000 4511 988 4218 25235;25236;25237;25238;25239;25240;25241;25242;25243;25244;25245 30327;30328;30329;30330;30331;30332;30333;30334 30331 8 ELTLLGKPK Unmodified 997.61718 0.61718181 1464 Q00059 TFAM Transcription factor A, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 50.484 50.477 3 0.00046392 13783 20211116_3447_TMUAki_TMT10x_S_F8 85.533 47.177 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4512 1464 4219 25246;25247 30335;30336 30336 2 ELTSLVK Unmodified 788.46437 0.46436956 85 O00422-2;O00422 SAP18 Histone deacetylase complex subunit SAP18 yes no 0 0 0 0 By MS/MS 5 0 1 1 50.499 50.683 2 0.007306 13803 20211116_3444_TMUAki_TMT10x_S_F5 104.45 44.807 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4513 85 4220 25248 30337 30337 1 ELTSTCSPIISKPKPK Unmodified 1784.9706 0.97062071 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 2 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 43.09 43 4 5.1218E-21 12758 20211116_3429_TMUAki_TMT10x_P_F2 167.69 154.26 6464900 10533000 143290 9747900 23031000 18181000 10217000 10029000 12833000 9437700 10341000 6020500 9825500 890580 10126000 21769000 17818000 11115000 10590000 12853000 9241700 10053000 3 3 2 3 3 3 3 3 3 3 3 5467000 8938300 143290 8260900 21923000 17359000 9249400 8040100 10524000 7833000 8652200 5091300 8337800 817260 8611400 20711000 16914000 10084000 8638700 10584000 7658600 8404400 2 2 2 2 2 2 2 2 2 2 2 997960 1594800 0 1487000 1108200 821710 967800 1988600 2309500 1604700 1689000 929110 1487700 73322 1514700 1058300 904370 1030600 1951500 2268700 1583100 1648500 1 1 0 1 1 1 1 1 1 1 1 1159600000 816320000 343310000 4514 916 4221 25249;25250;25251 30338;30339;30340 30339 3 ELTVDNSFEFEK Unmodified 1456.6722 0.67219008 3113 Q9UHA3 RSL24D1 Probable ribosome biogenesis protein RLP24 yes yes 0 0 0 0 By MS/MS 1 0 1 1 65.216 64.978 2 1.6173E-15 22171 20211116_3439_TMUAki_TMT10x_S_F1 171.67 150.2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4515 3113 4222 25252 30341 30341 1 ELTVSNNDINEAGVR Unmodified 1629.7958 0.79582747 651 P13489 RNH1 Ribonuclease inhibitor yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 43.717 43.749 3 3.2876E-14 13337 20211116_3430_TMUAki_TMT10x_P_F3 142.45 118.6 1294400 1906600 12363 2359400 2209700 1795700 1400800 1717900 1760800 1406100 1785300 1205300 1780800 130660 2366500 2099100 1862300 1474400 1741200 1776500 1386100 1721400 2 2 1 2 2 2 2 2 2 2 2 544560 825490 12363 974350 1532900 1250500 682130 715550 781930 622690 785510 507130 770830 70511 987610 1449100 1244900 739490 751740 791240 611980 757640 1 1 1 1 1 1 1 1 1 1 1 749890 1081200 0 1385000 676820 545110 718710 1002400 978890 783370 999780 698210 1010000 60154 1378900 649950 617410 734880 989510 985210 774110 963810 1 1 0 1 1 1 1 1 1 1 1 123500000 49888000 73612000 4516 651 4223 25253;25254 30342;30343 30342 2 ELVDDSVNNVRKDDPTLLSSGR Unmodified 2428.2194 0.21939485 764 P22061;P22061-2 PCMT1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes no 0 0 0 2 By MS/MS 5 0 1 1 52.281 52.467 4 3.8345E-07 14521 20211116_3444_TMUAki_TMT10x_S_F5 90.084 74.492 3427600 6582700 47611 6940000 4136700 3544100 2160400 7708800 7681300 6176800 6121100 3191800 6143700 335020 7003900 3919400 3913500 2465600 7581700 7517400 6095700 5953100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3427600 6582700 47611 6940000 4136700 3544100 2160400 7708800 7681300 6176800 6121100 3191800 6143700 335020 7003900 3919400 3913500 2465600 7581700 7517400 6095700 5953100 2 2 1 2 2 2 2 2 2 2 2 208250000 0 208250000 4517 764 4224 25255 30344;30345 30344 2 ELVEFAQDDDRLR Unmodified 1604.7794 0.77944912 1721 Q14677;Q14677-2;Q14677-3 CLINT1 Clathrin interactor 1 yes no 0 0 0 1 By matching By MS/MS 1 0 2 1 1 50.787 50.651 3 4.9604E-05 16367 20211116_3439_TMUAki_TMT10x_S_F1 98.582 83.38 938720 1612300 45572 1843900 844470 816330 795550 1243200 1333500 1108300 1393500 874380 1505300 118980 1849300 811250 904600 826180 1238500 1335200 1088000 1342400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 938720 1612300 45572 1843900 844470 816330 795550 1243200 1333500 1108300 1393500 874380 1505300 118980 1849300 811250 904600 826180 1238500 1335200 1088000 1342400 1 1 1 1 1 1 1 1 1 1 1 351620000 226910000 124710000 4518 1721 4225 25256;25257 30346 30346 1 ELVEFAQDDDRLREER Unmodified 2018.9657 0.96574634 1721 Q14677;Q14677-2;Q14677-3 CLINT1 Clathrin interactor 1 yes no 0 0 0 2 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 45.263 45.119 4 3.5525E-29 13638 20211116_3429_TMUAki_TMT10x_P_F2 194.4 160.22 4305100 7133600 18537 7748600 6957100 7183700 5014500 6278300 5990800 5185300 6689700 4008300 6658700 292760 7853000 6620000 7332700 5218200 6396300 6076700 5109300 6431700 6 6 3 6 6 6 6 6 6 6 6 2432100 3908400 5894.3 4519900 5109800 5474400 3361000 3449700 3203600 2884200 3781300 2264200 3649300 197410 4582100 4852800 5472600 3495800 3592700 3286500 2840200 3629800 3 3 1 3 3 3 3 3 3 3 3 1873000 3225200 12643 3228700 1847300 1709300 1653500 2828600 2787200 2301100 2908400 1744100 3009400 95343 3270900 1767200 1860200 1722400 2803600 2790200 2269100 2801900 3 3 2 3 3 3 3 3 3 3 3 1989000000 1429700000 559290000 4519 1721 4226 25258;25259;25260;25261;25262;25263 30347;30348;30349;30350;30351;30352 30348 6 ELVEPVSR Unmodified 927.50255 0.50254598 1115 P49748;P49748-2;P49748-3 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS 2 0 1 1 34.249 34.33 2 0.0054066 7918 20211116_3440_TMUAki_TMT10x_S_F2 88.358 54.046 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4520 1115 4227 25264 30353 30353 1 ELVFKEDGQEYAQVIK Unmodified 1894.9676 0.96764382 1064 P47813;O14602 EIF1AX;EIF1AY Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal yes no 0 0 0 1 By MS/MS By MS/MS 4.71 1.44 1 2 3 4 2 2 7 7 61.672 61.735 3;4 1.6602E-35 19649 20211116_3442_TMUAki_TMT10x_S_F4 205.98 179.74 163650000 274480000 868140 266420000 207090000 274430000 193510000 213870000 211590000 210330000 216050000 152370000 256080000 14057000 272480000 198220000 277720000 197550000 220400000 214630000 205570000 208280000 20 20 11 20 20 20 20 20 20 20 20 86231000 141080000 572140 137230000 112780000 188980000 111760000 109610000 109470000 107140000 108380000 80291000 131630000 7637200 141040000 108120000 187540000 113350000 115380000 111430000 104740000 104590000 10 10 5 10 10 10 10 10 10 10 10 77414000 133400000 296000 129190000 94308000 85455000 81748000 104260000 102120000 103190000 107660000 72078000 124460000 6419500 131440000 90096000 90177000 84208000 105020000 103200000 100820000 103690000 10 10 6 10 10 10 10 10 10 10 10 16699000000 8425300000 8273500000 4521 1064 4228 25265;25266;25267;25268;25269;25270;25271;25272;25273;25274;25275;25276;25277;25278 30354;30355;30356;30357;30358;30359;30360;30361;30362;30363;30364;30365;30366;30367;30368;30369;30370;30371;30372;30373 30367 20 ELVGPPLAETVFTPK Unmodified 1596.8763 0.87630962 1122 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 0 0 0 0 By MS/MS By MS/MS 6 0.707 1 2 1 3 1 76.069 76.094 3 4.8138E-05 24561 20211116_3445_TMUAki_TMT10x_S_F6 91.076 76.657 12146000 19942000 192540 18268000 14036000 22634000 15097000 14803000 12538000 14338000 15439000 11310000 18601000 1212900 18820000 13496000 22613000 15179000 15432000 12970000 14023000 14804000 5 5 5 5 5 5 5 5 5 5 5 7989200 12898000 85635 11623000 8478900 17702000 9876600 9904700 8203200 9531000 10020000 7439400 12031000 749030 12038000 8170300 17483000 9893400 10453000 8483000 9323800 9609600 3 3 3 3 3 3 3 3 3 3 3 4156600 7043500 106910 6645200 5556800 4932600 5220800 4897900 4334600 4807400 5419400 3871000 6570800 463850 6781700 5326200 5129800 5285800 4978800 4487000 4698900 5194300 2 2 2 2 2 2 2 2 2 2 2 1155500000 877440000 278070000 4522 1122 4229 25279;25280;25281;25282 30374;30375;30376;30377;30378 30378 5 ELVHLYPR Unmodified 1025.5658 0.56581494 2883 Q9NP81 SARS2 Serine--tRNA ligase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 38.954 39.044 3 0.0018618 9289 20211116_3445_TMUAki_TMT10x_S_F6 96.492 61.196 334500 539920 9731.4 622760 611430 613520 393680 426370 459100 421930 471730 311530 504110 40680 629330 581380 621380 412730 442820 464640 412260 454670 2 2 2 2 2 2 2 2 2 2 2 230520 337300 6984.1 423310 498080 517900 282390 299030 314840 282430 305250 214690 315060 29368 427190 472580 516850 298730 314580 318530 276520 294760 1 1 1 1 1 1 1 1 1 1 1 103980 202620 2747.3 199450 113350 95617 111280 127340 144260 139500 166490 96840 189050 11313 202140 108800 104530 114010 128230 146110 135740 159920 1 1 1 1 1 1 1 1 1 1 1 29762000 22095000 7666800 4523 2883 4230 25283;25284 30379;30380 30380 2 ELVLDNSR Unmodified 944.49271 0.49270958 977 P39687 ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member A yes yes 0 0 0 0 By MS/MS By MS/MS 2.56 1.07 2 2 3 2 4 5 37.826 37.747 2 0.00045615 9222 20211116_3440_TMUAki_TMT10x_S_F2 154.12 110.35 7620000 13038000 31672 14079000 11847000 12847000 9334100 10005000 11273000 9871500 11135000 7094900 12170000 678140 14271000 11296000 13100000 9659400 10311000 11378000 9646500 10745000 8 8 4 8 8 8 8 8 8 8 8 3928600 6809800 10931 7522500 7908900 9275500 5456600 5103100 5990300 5370900 5824800 3657700 6356900 364260 7650100 7520600 9247400 5679600 5407100 6064900 5234500 5624100 4 4 2 4 4 4 4 4 4 4 4 3691400 6228200 20740 6556600 3938300 3571600 3877500 4901400 5282300 4500600 5309800 3437100 5812800 313880 6620900 3775000 3852600 3979800 4904300 5313400 4412000 5121300 4 4 2 4 4 4 4 4 4 4 4 924990000 436060000 488920000 4524 977 4231 25285;25286;25287;25288;25289;25290;25291;25292;25293 30381;30382;30383;30384;30385;30386;30387;30388;30389 30387 9 ELVPSSDPIVFVVGAFAHGK Unmodified 2068.0993 0.099326699 2383 Q92979 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.71 3.01 2 1 1 1 2 4 3 79.862 79.848 3 1.2655E-19 28169 20211116_3439_TMUAki_TMT10x_S_F1 159.88 150.13 26252000 44048000 31354 38559000 28686000 35209000 31444000 20946000 17976000 22478000 29261000 24440000 41081000 1725600 39674000 27543000 35755000 31334000 22062000 19277000 21890000 27877000 7 7 2 7 7 7 7 7 7 7 7 13251000 22291000 28473 18130000 12305000 21781000 14486000 10140000 8697900 10680000 13725000 12335000 20785000 746710 18845000 11832000 21702000 14400000 10913000 9280300 10409000 13085000 3 3 1 3 3 3 3 3 3 3 3 13001000 21756000 2881.2 20428000 16381000 13428000 16958000 10806000 9278000 11798000 15535000 12104000 20296000 978860 20829000 15711000 14052000 16933000 11149000 9996900 11482000 14793000 4 4 1 4 4 4 4 4 4 4 4 6616800000 3289400000 3327400000 4525 2383 4232 25294;25295;25296;25297;25298;25299;25300 30390;30391;30392;30393;30394;30395;30396;30397 30394 8 ELVSCSNCTDYQAR Unmodified 1701.7087 0.70866872 1107 P49591 SARS Serine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 By MS/MS 2 0 1 1 36.714 36.483 3 0.089581 10168 20211116_3429_TMUAki_TMT10x_P_F2 28.956 14.266 430800 596690 15504 730610 1209500 1026300 581050 541290 590370 455510 672000 401230 557280 61072 740300 1144900 1016400 622530 572250 603080 448400 645720 1 1 1 1 1 1 1 1 1 1 1 430800 596690 15504 730610 1209500 1026300 581050 541290 590370 455510 672000 401230 557280 61072 740300 1144900 1016400 622530 572250 603080 448400 645720 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30929000 30929000 0 4526 1107 4233 25301 30398 30398 1 ELVSLKQEQQAFK Unmodified 1546.8355 0.83550744 1536 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 52.499 53.191 3 4.0598E-19 17214 20211116_3446_TMUAki_TMT10x_S_F7 162.41 126.67 8703000 15509000 0 13582000 30009000 32316000 16067000 18273000 19075000 15187000 15839000 8102700 14464000 940830 14272000 28418000 31450000 17120000 19195000 19159000 14960000 15380000 2 2 0 2 2 2 2 2 2 2 2 8703000 15509000 0 13582000 30009000 32316000 16067000 18273000 19075000 15187000 15839000 8102700 14464000 940830 14272000 28418000 31450000 17120000 19195000 19159000 14960000 15380000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 967760000 967760000 0 4527 1536 4234 25302;25303 30399;30400;30401 30401 3 ELVTIIPNFSLDK Unmodified 1487.8235 0.82354577 3223 Q9Y248 GINS2 DNA replication complex GINS protein PSF2 yes yes 0 0 0 0 By MS/MS By MS/MS 7.25 0.433 3 1 3 1 79.029 79.079 2 6.7049E-10 27887 20211116_3446_TMUAki_TMT10x_S_F7 139.86 109.6 2748700 4601900 0 4669900 3398300 3246000 4117100 2444800 2704800 2796400 3478400 2558800 4294300 179920 4738000 3272800 3376600 4094900 2536600 2840900 2716600 3331600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2748700 4601900 0 4669900 3398300 3246000 4117100 2444800 2704800 2796400 3478400 2558800 4294300 179920 4738000 3272800 3376600 4094900 2536600 2840900 2716600 3331600 1 1 0 1 1 1 1 1 1 1 1 1122400000 409670000 712680000 4528 3223 4235 25304;25305;25306;25307 30402;30403;30404 30404 3 ELVVTQLGYDTR Unmodified 1392.7249 0.72489436 1487 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 56.991 57.073 2 6.957E-07 17754 20211116_3442_TMUAki_TMT10x_S_F4 122.55 78.412 22911000 37133000 0 43597000 23347000 20061000 21359000 16619000 15058000 16474000 24681000 21330000 34673000 1543800 43668000 22312000 21811000 21574000 17066000 15936000 16095000 23511000 4 4 0 4 4 4 4 4 4 4 4 7185200 11323000 0 12625000 8875100 9894600 7680900 4789800 4704100 4725200 7220500 6690000 10571000 599020 12747000 8478500 10134000 7761300 5125700 5005200 4617600 6887500 1 1 0 1 1 1 1 1 1 1 1 15726000 25810000 0 30972000 14471000 10166000 13678000 11829000 10354000 11748000 17461000 14640000 24103000 944740 30921000 13834000 11677000 13813000 11940000 10931000 11477000 16624000 3 3 0 3 3 3 3 3 3 3 3 1827800000 841580000 986260000 4529 1487 4236 25308;25309;25310;25311 30405;30406;30407;30408;30409 30408 5 ELVYPPDYNPEGK Unmodified 1519.7195 0.71947463 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 By MS/MS By MS/MS 4.22 0.916 1 4 4 5 4 56.745 56.768 2;3 2.1467E-14 17085 20211116_3431_TMUAki_TMT10x_P_F4 167.76 124.24 53424000 89009000 444780 100900000 87859000 105410000 65715000 70619000 75980000 66650000 71365000 49743000 83100000 4865700 102160000 83683000 106320000 68133000 73438000 76684000 65258000 68986000 14 14 4 14 14 14 14 14 14 14 14 37933000 62191000 444780 70984000 76341000 94406000 56325000 50494000 54074000 48004000 50457000 35321000 58063000 3880400 72144000 72709000 93743000 58110000 53480000 54982000 46986000 48786000 10 10 4 10 10 10 10 10 10 10 10 15491000 26819000 0 29912000 11517000 11004000 9389600 20126000 21906000 18646000 20907000 14422000 25036000 985320 30014000 10974000 12581000 10023000 19958000 21702000 18272000 20200000 4 4 0 4 4 4 4 4 4 4 4 3986400000 2843400000 1143000000 4530 647 4237 25312;25313;25314;25315;25316;25317;25318;25319;25320 30410;30411;30412;30413;30414;30415;30416;30417;30418;30419;30420;30421;30422;30423;30424;30425;30426 30414 17 ELYDRYGEQGLR Unmodified 1497.7212 0.72120596 298 O60884 DNAJA2 DnaJ homolog subfamily A member 2 yes yes 0 0 0 1 By MS/MS By MS/MS 4 0.632 1 3 1 1 4 38.254 38.263 3 6.6209E-12 12560 20211116_3441_TMUAki_TMT10x_S_F3 166.7 125.3 2682400 4590800 28247 5844300 5565500 4433100 3093600 4031700 4867900 3299900 4298400 2497700 4288400 283480 5852500 5275700 4594200 3322100 4097500 4854400 3253000 4164200 5 5 3 5 5 5 5 5 5 5 5 1179800 2120200 21022 2736100 4131700 3254400 1875200 1749300 2377900 1547400 1969100 1098700 1980700 158750 2755500 3906200 3249600 2035600 1848400 2382600 1519600 1912100 1 1 1 1 1 1 1 1 1 1 1 1502600 2470600 7224.4 3108200 1433800 1178700 1218400 2282400 2490000 1752500 2329400 1399000 2307700 124730 3097000 1369500 1344600 1286500 2249000 2471800 1733400 2252000 4 4 2 4 4 4 4 4 4 4 4 255490000 157270000 98218000 4531 298 4238 25321;25322;25323;25324;25325 30427;30428;30429;30430;30431;30432 30428 6 ELYGQVLYR Unmodified 1139.5975 0.597509 381 O76094;O76094-2 SRP72 Signal recognition particle subunit SRP72 yes no 0 0 0 0 By MS/MS By MS/MS 5.17 0.687 1 3 2 3 3 50.975 51.122 2 0.00023038 14253 20211116_3445_TMUAki_TMT10x_S_F6 133.33 109.47 16668000 26704000 13415 30421000 24024000 30545000 19408000 22833000 23748000 22654000 23747000 15519000 24932000 1331100 30774000 22909000 30936000 20062000 23599000 23969000 22132000 22908000 5 5 2 5 5 5 5 5 5 5 5 10015000 15187000 13415 17776000 18881000 23841000 13108000 13537000 13757000 13231000 13862000 9324700 14180000 906030 18042000 17956000 23682000 13618000 14275000 13971000 12935000 13369000 3 3 2 3 3 3 3 3 3 3 3 6653100 11517000 0 12645000 5142500 6704100 6299200 9295500 9990600 9422700 9885500 6193800 10751000 425040 12732000 4953100 7254300 6443400 9324100 9998500 9197500 9539400 2 2 0 2 2 2 2 2 2 2 2 1354300000 587780000 766520000 4532 381 4239 25326;25327;25328;25329;25330;25331 30433;30434;30435;30436;30437;30438 30438 6 ELYIQHAK Unmodified 1000.5342 0.53418046 1464 Q00059;Q00059-2 TFAM Transcription factor A, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 34.767 34.834 3 0.0015217 7358 20211116_3444_TMUAki_TMT10x_S_F5 99.136 55.366 1702400 2638100 4653.3 2782300 2235500 2276500 1874700 1540800 1611100 1392200 1874900 1585000 2462200 132960 2820700 2133500 2333800 1912300 1599300 1659900 1365800 1800500 2 2 1 2 2 2 2 2 2 2 2 1192500 1846600 0 1879600 1758700 1832400 1337800 1072800 1069200 940960 1280900 1110200 1723200 86815 1914400 1674400 1852600 1370700 1125100 1107000 924420 1229100 1 1 0 1 1 1 1 1 1 1 1 509840 791490 4653.3 902770 476870 444050 536880 468050 541870 451210 594060 474750 738960 46144 906250 459030 481200 541600 474160 552890 441370 571450 1 1 1 1 1 1 1 1 1 1 1 148470000 81082000 67386000 4533 1464 4240 25332;25333 30439;30440 30440 2 ELYIQHAKEDETR Unmodified 1630.7951 0.79509919 1464 Q00059;Q00059-2 TFAM Transcription factor A, mitochondrial yes no 0 0 0 1 By matching By MS/MS 4.67 0.471 1 2 2 1 34.58 34.632 4 0.00090974 7282 20211116_3444_TMUAki_TMT10x_S_F5 78.932 52.203 215080 340410 0 408130 221900 177590 232200 220460 229680 202850 331940 200240 317890 14735 408130 212820 196100 234910 221460 237400 198840 317040 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 215080 340410 0 408130 221900 177590 232200 220460 229680 202850 331940 200240 317890 14735 408130 212820 196100 234910 221460 237400 198840 317040 1 1 0 1 1 1 1 1 1 1 1 140000000 128680000 11318000 4534 1464 4241 25334;25335;25336 30441 30441 1 ELYLEDSPLELK Unmodified 1447.7446 0.74462675 2286 Q8TEM1;Q8TEM1-2 NUP210 Nuclear pore membrane glycoprotein 210 yes no 0 0 0 0 By MS/MS By MS/MS 2.4 0.917 2 3 4 1 5 5 74.518 74.349 2;3 5.889E-31 25415 20211116_3429_TMUAki_TMT10x_P_F2 273.44 226.24 12627000 21803000 72367 20587000 15639000 20804000 16162000 15034000 14235000 15014000 16639000 11756000 20340000 1015700 21092000 15003000 21051000 16306000 15576000 14651000 14665000 15977000 7 7 3 7 7 7 7 7 7 7 7 7405600 12648000 64616 11800000 8431300 14758000 9498000 8760000 8354700 8774400 9591400 6895300 11799000 629770 12142000 8111200 14717000 9543100 9209700 8593400 8569000 9214200 4 4 2 4 4 4 4 4 4 4 4 5221500 9154400 7751.9 8787600 7207300 6046400 6663500 6274300 5880300 6239800 7047800 4861100 8540600 385910 8949700 6892200 6333900 6763300 6366800 6057900 6095500 6762600 3 3 1 3 3 3 3 3 3 3 3 942700000 497050000 445650000 4535 2286 4242 25337;25338;25339;25340;25341;25342;25343;25344;25345;25346 30442;30443;30444;30445;30446;30447;30448;30449;30450;30451;30452 30446 11 ELYLEEALQNER Unmodified 1505.7362 0.73618733 2948 Q9NTX5;Q9NTX5-3;Q9NTX5-6;Q9NTX5-2 ECHDC1 Ethylmalonyl-CoA decarboxylase yes no 0 0 0 0 By MS/MS 1 0 2 2 64.544 64.292 2;3 1.5845E-15 21903 20211116_3439_TMUAki_TMT10x_S_F1 171.92 135.23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4536 2948 4243 25347;25348 30453;30454 30454 2 EMAAMCLGLAHSLSR 2 Oxidation (M) 1677.7637 0.76368118 3254 Q9Y2X3 NOP58 Nucleolar protein 58 yes yes 0 0 2 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 38.67 38.892 3 8.9427E-06 8940 20211116_3434_TMUAki_TMT10x_P_F6 100.68 93.553 926560 1590500 6773 1731200 2445500 2488100 1346900 1306600 1497300 1136700 1426800 862730 1484600 98487 1767400 2317200 2461500 1428300 1383000 1514200 1117200 1378600 3 3 2 3 3 3 3 3 3 3 3 926560 1590500 6773 1731200 2445500 2488100 1346900 1306600 1497300 1136700 1426800 862730 1484600 98487 1767400 2317200 2461500 1428300 1383000 1514200 1117200 1378600 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 208190000 208190000 0 4537 3254 4244 25349;25350;25351 30455;30456;30457;30458 30455 3229;3230 4 EMAAMCLGLAHSLSR Unmodified 1645.7739 0.77385193 3254 Q9Y2X3 NOP58 Nucleolar protein 58 yes yes 0 0 0 0 By MS/MS 8 0 1 1 55.553 55.499 3 0.046747 15872 20211116_3447_TMUAki_TMT10x_S_F8 37.438 31.197 7232000 12070000 122890 11112000 7897000 8257000 7048900 10208000 10023000 10383000 10368000 6734600 11259000 723430 11361000 7558200 8631600 7286400 10286000 10079000 10133000 9990900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7232000 12070000 122890 11112000 7897000 8257000 7048900 10208000 10023000 10383000 10368000 6734600 11259000 723430 11361000 7558200 8631600 7286400 10286000 10079000 10133000 9990900 1 1 1 1 1 1 1 1 1 1 1 133420000 0 133420000 4538 3254 4244 25352 30459 30459 1 EMACPYSVLISGDIKDR Oxidation (M) 1968.9285 0.9284979 1901 Q52LJ0;Q52LJ0-1 FAM98B Protein FAM98B yes no 0 0 1 1 By MS/MS 5.5 0.5 1 1 2 57.992 58.079 3 0.0041817 17139 20211116_3445_TMUAki_TMT10x_S_F6 60.062 48.086 2150600 4050700 0 3694000 2333000 2363300 2002700 2974300 3534700 2924700 3108600 2002000 3778400 127360 3773800 2225200 2503400 2096200 2991700 3513800 2858500 3011900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2150600 4050700 0 3694000 2333000 2363300 2002700 2974300 3534700 2924700 3108600 2002000 3778400 127360 3773800 2225200 2503400 2096200 2991700 3513800 2858500 3011900 1 1 0 1 1 1 1 1 1 1 1 378460000 0 378460000 4539 1901 4245 25353;25354 30460 30460 2500 1 EMAEIRDQMQQQLNDYEQLLDVK 2 Oxidation (M) 2868.327 0.32697274 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 2 1 By MS/MS By MS/MS 2.48 0.972 4 8 7 4 16 7 65.011 64.901 3;4 1.112E-20 23493 20211116_3439_TMUAki_TMT10x_S_F1 141.69 126.6 63836000 110420000 159940 82489000 76261000 147690000 82471000 139230000 150730000 135930000 108520000 59436000 102920000 2977900 87100000 73271000 146250000 85442000 141890000 148860000 132890000 105990000 34 34 11 34 34 34 34 34 34 34 34 34512000 57772000 66658 43307000 32205000 99389000 41254000 76487000 82545000 74203000 59057000 32133000 53854000 1658700 46041000 31099000 97277000 42650000 78854000 81335000 72565000 57697000 22 22 7 22 22 22 22 22 22 22 22 29323000 52643000 93279 39182000 44056000 48304000 41217000 62743000 68186000 61723000 49464000 27303000 49071000 1319200 41059000 42172000 48971000 42792000 63034000 67523000 60324000 48296000 12 12 4 12 12 12 12 12 12 12 12 20145000000 11433000000 8712200000 4540 748 4246 25355;25356;25357;25358;25359;25360;25361;25362;25363;25364;25365;25366;25367;25368;25369;25370;25371;25372;25373;25374;25375;25376;25377 30461;30462;30463;30464;30465;30466;30467;30468;30469;30470;30471;30472;30473;30474;30475;30476;30477;30478;30479;30480;30481;30482;30483;30484;30485;30486;30487;30488;30489;30490;30491;30492;30493;30494 30484 858;859 34 EMAEIRDQMQQQLNDYEQLLDVK Oxidation (M) 2852.3321 0.33205812 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 1 1 By MS/MS By MS/MS 2.42 0.862 2 4 5 1 4 8 76.016 75.922 3;4 8.7055E-09 24537 20211116_3440_TMUAki_TMT10x_S_F2 102.48 87.39 23029000 37552000 357730 33763000 25528000 36611000 29381000 19938000 18114000 23561000 27454000 21445000 35026000 2270800 34754000 24595000 36746000 29252000 21221000 19252000 22862000 26195000 8 8 7 8 8 8 8 8 8 8 8 16467000 26256000 196420 23987000 16053000 29177000 19864000 13329000 12808000 15861000 18942000 15334000 24491000 1535700 24708000 15500000 29047000 19731000 14428000 13556000 15387000 18083000 6 6 5 6 6 6 6 6 6 6 6 6561200 11295000 161300 9776800 9474200 7433900 9516900 6608800 5306100 7700200 8512100 6110300 10534000 735100 10046000 9095200 7699100 9520800 6793700 5696100 7475400 8112000 2 2 2 2 2 2 2 2 2 2 2 6187400000 1929700000 4257700000 4541 748 4246 25378;25379;25380;25381;25382;25383;25384;25385;25386;25387;25388;25389 30495;30496;30497;30498;30499;30500;30501;30502;30503 30501 858;859 9 EMAIPVLEAR Oxidation (M) 1143.5958 0.59579444 1229 P54886;P54886-2 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes no 0 0 1 0 By MS/MS By MS/MS 3 0 2 1 1 48.041 47.854 2 0.0052736 15115 20211116_3430_TMUAki_TMT10x_P_F3 79.427 54.337 6106100 9631600 944.96 12296000 7869300 7731700 6155700 5597400 6236100 5499100 7758000 5685100 8997300 499920 12288000 7500400 8110100 6336100 5795900 6394700 5374800 7436800 2 2 1 2 2 2 2 2 2 2 2 2895100 4257600 0 5770200 5126700 5127500 3161800 2611400 2891200 2539400 3425400 2695300 3978400 239390 5770100 4864300 5206700 3301500 2780000 2972100 2483000 3287800 1 1 0 1 1 1 1 1 1 1 1 3211000 5374000 944.96 6526100 2742600 2604200 2994000 2986000 3344900 2959800 4332700 2989800 5018800 260540 6517700 2636100 2903400 3034600 3015900 3422500 2891800 4149000 1 1 1 1 1 1 1 1 1 1 1 340920000 213160000 127760000 4542 1229 4247 25390;25391 30504;30505 30504 1648 2 EMDRETLIDVAR Oxidation (M) 1462.7086 0.70859237 982 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 1 1 By MS/MS By MS/MS 2.43 1.12 3 5 4 1 1 6 8 37.004 36.958 2;3 1.0526E-07 10364 20211116_3429_TMUAki_TMT10x_P_F2 140.16 107.84 11491000 17666000 67280 21115000 23071000 20612000 12835000 17550000 19253000 14268000 17476000 10699000 16497000 862120 21290000 21858000 20960000 13753000 17900000 19242000 14070000 16913000 20 20 7 20 20 20 20 20 20 20 20 6859600 9995800 28246 12095000 18764000 16457000 9019200 9976600 11313000 8150100 10023000 6386400 9335000 663720 12256000 17742000 16350000 9729100 10416000 11363000 8035100 9708900 11 11 4 11 11 11 11 11 11 11 11 4631600 7669700 39034 9019900 4307900 4155500 3815600 7573800 7939700 6117500 7452700 4312300 7161700 198400 9033700 4116500 4610300 4023700 7484400 7879500 6034700 7204400 9 9 3 9 9 9 9 9 9 9 9 3851600000 2761500000 1090100000 4543 982 4248 25392;25393;25394;25395;25396;25397;25398;25399;25400;25401;25402;25403;25404;25405 30506;30507;30508;30509;30510;30511;30512;30513;30514;30515;30516;30517;30518;30519;30520;30521;30522;30523;30524;30525 30511 1262 20 EMDRETLIDVAR Unmodified 1446.7137 0.71367774 982 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 1 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 44.037 43.908 3 1.1826E-16 14608 20211116_3441_TMUAki_TMT10x_S_F3 203.87 151.8 14316000 23126000 161740 29463000 27168000 22910000 16772000 17978000 16271000 14770000 21069000 13330000 21603000 1401200 29512000 25791000 23633000 17540000 18432000 16746000 14558000 20176000 9 9 6 9 9 9 9 9 9 9 9 7690400 12023000 61328 15614000 21372000 18494000 12074000 9651000 8830000 7877200 11371000 7160100 11233000 774310 15719000 20255000 18464000 12633000 10206000 9215100 7766400 10890000 4 4 2 4 4 4 4 4 4 4 4 6625200 11103000 100410 13849000 5796600 4415700 4697800 8327000 7441500 6893200 9698600 6169400 10370000 626920 13793000 5536200 5168200 4907600 8226000 7530500 6791300 9286000 5 5 4 5 5 5 5 5 5 5 5 2680000000 1729800000 950200000 4544 982 4248 25406;25407;25408;25409;25410;25411 30526;30527;30528;30529;30530;30531;30532;30533;30534 30533 9 EMEAELEDERK Oxidation (M) 1393.6031 0.60312424 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 1 1 By MS/MS By MS/MS 1 0 2 1 1 31.735 31.757 3 0.00062554 8604 20211116_3439_TMUAki_TMT10x_S_F1 80.69 65.718 912250 1409100 446.02 1572700 1121900 882360 960510 521900 654070 546910 972350 849300 1315400 66173 1582500 1070900 933380 973240 549570 690100 533110 928140 3 3 1 3 3 3 3 3 3 3 3 330550 485170 0 532670 494910 441900 316650 160750 177780 166820 317670 307750 452900 26880 538690 469880 449460 326210 177810 191900 162670 302120 1 1 0 1 1 1 1 1 1 1 1 581700 923890 446.02 1040000 627040 440470 643860 361150 476290 380090 654680 541550 862520 39293 1043800 601040 483920 647030 371760 498200 370440 626020 2 2 1 2 2 2 2 2 2 2 2 91963000 56180000 35783000 4545 934 4249 25412;25413 30535;30536;30537 30537 1171 3 EMEAELEDERK Unmodified 1377.6082 0.60820962 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 37.885 37.885 3 7.5224E-15 9163 20211116_3428_TMUAki_TMT10x_P_F1 192.68 127.5 995740 1370000 0 1709800 1590100 1192900 1014100 502160 463760 476070 1093800 927100 1279600 87254 1712600 1510000 1231600 1041800 544640 518240 466030 1035600 1 1 0 1 1 1 1 1 1 1 1 995740 1370000 0 1709800 1590100 1192900 1014100 502160 463760 476070 1093800 927100 1279600 87254 1712600 1510000 1231600 1041800 544640 518240 466030 1035600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 77272000 77272000 0 4546 934 4249 25414;25415;25416;25417 30538;30539;30540;30541 30538 4 EMEENFAVEAANYQDTIGR Oxidation (M) 2201.9535 0.95352668 561 P08670 VIM Vimentin yes yes 0 0 1 0 By MS/MS By MS/MS 1.4 0.8 4 1 2 3 60.568 60.39 2;3 5.0221E-77 20327 20211116_3439_TMUAki_TMT10x_S_F1 275.42 261.7 7571600 13635000 43895 12660000 8876400 13855000 8722900 11502000 12123000 11777000 10574000 7049100 12719000 545970 13002000 8500700 13988000 8961300 11821000 12129000 11491000 10249000 6 6 2 6 6 6 6 6 6 6 6 3641700 6280500 26561 5105400 4158200 8866900 4280200 4807000 5674000 5270800 4602000 3390400 5856000 266940 5347600 3987400 8709800 4378300 5106200 5673300 5128600 4472500 3 3 1 3 3 3 3 3 3 3 3 3930000 7354500 17333 7554100 4718200 4987900 4442800 6694500 6448900 6506100 5972400 3658700 6863300 279020 7654000 4513300 5278000 4583000 6714800 6455900 6362000 5776100 3 3 1 3 3 3 3 3 3 3 3 6175900000 3508300000 2667600000 4547 561 4250 25418;25419;25420;25421;25422 30542;30543;30544;30545;30546;30547;30548 30546 525 7 EMEENFAVEAANYQDTIGR Unmodified 2185.9586 0.95861206 561 P08670 VIM Vimentin yes yes 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 67.695 67.487 3 1.5961E-42 23134 20211116_3439_TMUAki_TMT10x_S_F1 218.36 208.26 1772900 3541500 0 3236500 2600700 2292700 2386400 2396200 2036300 2336300 2481800 1650400 3303400 110740 3309100 2485100 2396200 2420900 2429300 2102700 2284200 2380300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1772900 3541500 0 3236500 2600700 2292700 2386400 2396200 2036300 2336300 2481800 1650400 3303400 110740 3309100 2485100 2396200 2420900 2429300 2102700 2284200 2380300 1 1 0 1 1 1 1 1 1 1 1 1092100000 0 1092100000 4548 561 4250 25423;25424;25425;25426 30549;30550;30551 30550 3 EMEQLFSQYGR Oxidation (M) 1402.6187 0.61871473 1717 Q14576-2;Q14576 ELAVL3 ELAV-like protein 3 yes no 0 0 1 0 By MS/MS By matching 3.33 0.471 2 1 1 2 46.324 46.274 2 0.00034224 14470 20211116_3430_TMUAki_TMT10x_P_F3 96.618 86.632 571350 889010 2386.1 1184500 1866400 1985000 1003900 1275700 1426100 999800 964060 532000 830650 67731 1199500 1768100 1956900 1076400 1324600 1415900 987820 944290 1 1 1 1 1 1 1 1 1 1 1 571350 889010 2386.1 1184500 1866400 1985000 1003900 1275700 1426100 999800 964060 532000 830650 67731 1199500 1768100 1956900 1076400 1324600 1415900 987820 944290 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 229240000 86993000 142250000 4549 1717 4251 25427;25428;25429 30552 30552 2310 1 EMFEDTVEER Oxidation (M) 1299.5289 0.52889667 1854 Q16576 RBBP7 Histone-binding protein RBBP7 yes yes 0 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 37.431 37.388 2 2.0875E-06 8919 20211116_3428_TMUAki_TMT10x_P_F1 154.75 135.77 1030700 1646800 2108.8 2260300 2059300 1412100 1097000 1188900 1482800 970380 1602700 959580 1538900 92399 2249900 1949900 1485800 1174900 1213500 1495800 956730 1542300 2 2 1 2 2 2 2 2 2 2 2 404450 636340 2108.8 901080 1517200 1002100 602320 458850 565650 356260 645550 376590 594760 51082 902060 1431900 1002400 657660 490870 579890 352170 620260 1 1 1 1 1 1 1 1 1 1 1 626210 1010500 0 1359200 542100 410010 494630 730050 917120 614120 957140 582980 944180 41317 1347800 517980 483440 517290 722640 915940 604560 922080 1 1 0 1 1 1 1 1 1 1 1 240320000 146000000 94319000 4550 1854 4252 25430;25431 30553;30554 30553 2468 2 EMFEDTVEER Unmodified 1283.534 0.53398204 1854 Q16576 RBBP7 Histone-binding protein RBBP7 yes yes 0 0 0 0 By MS/MS 1 0 1 1 45.922 45.922 2 4.8234E-05 12375 20211116_3428_TMUAki_TMT10x_P_F1 132.91 117.76 2278100 3375000 0 4323700 8176800 7574700 4708600 6119100 5621100 3663300 3827900 2120500 3152800 198170 4392500 7748300 7483400 4985700 6221400 5614900 3678900 3748200 1 1 0 1 1 1 1 1 1 1 1 2278100 3375000 0 4323700 8176800 7574700 4708600 6119100 5621100 3663300 3827900 2120500 3152800 198170 4392500 7748300 7483400 4985700 6221400 5614900 3678900 3748200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 263040000 263040000 0 4551 1854 4252 25432 30555 30555 1 EMFGSGTACVVCPVSDILYK Oxidation (M) 2248.0214 0.021412008 1223 P54687;P54687-5;P54687-3;P54687-4;P54687-2 BCAT1 Branched-chain-amino-acid aminotransferase, cytosolic yes no 0 0 1 0 By MS/MS 7 0 1 1 75.947 76.054 3 5.6589E-09 26630 20211116_3446_TMUAki_TMT10x_S_F7 104.89 94.555 2011000 3449400 23845 2898600 2192900 2780900 2398800 2242300 2320500 2524200 2755700 1872600 3216600 191490 2994200 2109300 2828200 2420000 2315400 2379600 2453600 2644900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2011000 3449400 23845 2898600 2192900 2780900 2398800 2242300 2320500 2524200 2755700 1872600 3216600 191490 2994200 2109300 2828200 2420000 2315400 2379600 2453600 2644900 1 1 1 1 1 1 1 1 1 1 1 477940000 0 477940000 4552 1223 4253 25433 30556 30556 1641 1 EMFPYEASTPTGISASCR Oxidation (M) 2018.8714 0.87137695 1007 P42167;P42167-2 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes no 0 0 1 0 By MS/MS By MS/MS 4.5 0.5 4 4 4 4 51.56 51.717 2;3 3.0504E-57 15485 20211116_3442_TMUAki_TMT10x_S_F4 238.93 222.15 15964000 29141000 297540 30958000 21356000 25298000 17875000 28387000 27292000 25047000 26460000 14865000 27198000 1532100 31369000 20398000 26191000 18605000 28606000 27323000 24600000 25551000 10 10 5 10 10 10 10 10 10 10 10 5749900 10453000 69318 10502000 10992000 15531000 9024400 10394000 9532600 8971400 9162700 5353800 9754000 567120 10786000 10491000 15396000 9272400 10784000 9662400 8820600 8850300 3 3 2 3 3 3 3 3 3 3 3 10214000 18688000 228220 20456000 10364000 9767800 8851000 17993000 17759000 16076000 17298000 9511100 17444000 964940 20584000 9907000 10795000 9332800 17822000 17661000 15780000 16701000 7 7 3 7 7 7 7 7 7 7 7 9124300000 4968000000 4156300000 4553 1007 4254 25434;25435;25436;25437;25438;25439;25440;25441 30557;30558;30559;30560;30561;30562;30563;30564;30565;30566;30567 30563 1302 11 EMFPYEASTPTGISASCR Unmodified 2002.8765 0.87646233 1007 P42167;P42167-2 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes no 0 0 0 0 By MS/MS By MS/MS 4.75 0.829 2 1 1 2 2 58.45 58.494 3 0.00019126 18126 20211116_3433_TMUAki_TMT10x_P_F5 67.644 59.919 6369900 10843000 25424 11457000 8476800 9709900 7143100 7509300 7230100 6866900 8666100 5931100 10120000 570920 11619000 8095300 9950100 7318000 7726800 7402600 6733000 8315500 2 2 1 2 2 2 2 2 2 2 2 3313800 5751300 25424 5793800 4827800 6699700 4143500 3578800 3297700 3377100 4191800 3085700 5366700 319640 5921200 4613500 6699200 4212500 3790100 3423600 3306600 4016000 1 1 1 1 1 1 1 1 1 1 1 3056100 5091800 0 5663300 3649000 3010100 2999600 3930500 3932400 3489700 4474300 2845500 4753300 251290 5697400 3481800 3250900 3105500 3936600 3979000 3426400 4299500 1 1 0 1 1 1 1 1 1 1 1 1560900000 882390000 678500000 4554 1007 4254 25442;25443;25444;25445 30568;30569;30570 30569 3 EMGFTNMTEIQHK 2 Oxidation (M) 1596.6912 0.69122774 2976 Q9NVP1 DDX18 ATP-dependent RNA helicase DDX18 yes yes 0 0 2 0 By MS/MS 4 0 1 1 34.418 34.443 3 0.018469 8197 20211116_3431_TMUAki_TMT10x_P_F4 52.101 39.12 279300 494750 2117.8 631330 932370 824290 456740 375430 506250 351250 462730 260070 462170 34276 637300 882170 817750 489690 403640 511310 344040 447730 1 1 1 1 1 1 1 1 1 1 1 279300 494750 2117.8 631330 932370 824290 456740 375430 506250 351250 462730 260070 462170 34276 637300 882170 817750 489690 403640 511310 344040 447730 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 87620000 87620000 0 4555 2976 4255 25446 30571 30571 3057;3058 1 EMGLPVGTAAIAPIIAAVK Unmodified 1821.0434 0.043391725 2622 Q9BQ52;Q9BQ52-4;Q9BQ52-2 ELAC2 Zinc phosphodiesterase ELAC protein 2 yes no 0 0 0 0 By MS/MS 2 0 1 1 80.206 80.187 3 5.376E-05 26572 20211116_3440_TMUAki_TMT10x_S_F2 77.221 56.268 2043400 3314100 6570.8 3393600 2243800 2138000 2780400 1503300 1671500 1765300 2437300 1902600 3092700 178340 3437600 2165300 2241300 2757900 1568300 1776200 1713200 2327500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2043400 3314100 6570.8 3393600 2243800 2138000 2780400 1503300 1671500 1765300 2437300 1902600 3092700 178340 3437600 2165300 2241300 2757900 1568300 1776200 1713200 2327500 1 1 1 1 1 1 1 1 1 1 1 534550000 0 534550000 4556 2622 4256 25447 30572 30572 1 EMGLPVGTAAIAPIIAAVK Oxidation (M) 1837.0383 0.038306347 2622 Q9BQ52;Q9BQ52-4;Q9BQ52-2 ELAC2 Zinc phosphodiesterase ELAC protein 2 yes no 0 0 1 0 By matching By MS/MS 8 0 2 1 1 79.097 79.085 3 6.4871E-07 25443 20211116_3447_TMUAki_TMT10x_S_F8 99.569 86.802 2013800 3990100 2424.8 3387800 2776100 2455500 2719000 2051300 2086000 2490200 2983700 1875000 3720900 179890 3484700 2660600 2549900 2741400 2119200 2181700 2414000 2850500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2013800 3990100 2424.8 3387800 2776100 2455500 2719000 2051300 2086000 2490200 2983700 1875000 3720900 179890 3484700 2660600 2549900 2741400 2119200 2181700 2414000 2850500 1 1 1 1 1 1 1 1 1 1 1 1237600000 735990000 501620000 4557 2622 4256 25448;25449 30573 30573 2871 1 EMGTPLADTPTRPVTR Oxidation (M) 1756.8778 0.87778296 2617 Q9BPU6 DPYSL5 Dihydropyrimidinase-related protein 5 yes yes 0 0 1 1 By MS/MS By MS/MS 4.25 0.829 1 1 2 2 2 32.984 32.958 3 2.5274E-10 10143 20211116_3441_TMUAki_TMT10x_S_F3 121.99 109.01 2083400 3179900 19524 4255600 5412900 4924600 2672900 3315900 4023100 2615500 3455800 1940000 2971200 236000 4275400 5122300 4939500 2896300 3431600 4013600 2583300 3351300 5 5 4 5 5 5 5 5 5 5 5 1513600 2223500 9069.1 3101800 4883300 4389200 2155000 2472200 3023300 1898100 2513200 1409400 2078000 181140 3121500 4614300 4349000 2355400 2593100 3019600 1877500 2440200 2 2 2 2 2 2 2 2 2 2 2 569750 956420 10454 1153800 529610 535380 517960 843730 999850 717350 942640 530560 893180 54859 1153900 508050 590480 540920 838500 994060 705810 911100 3 3 2 3 3 3 3 3 3 3 3 640970000 564810000 76151000 4558 2617 4257 25450;25451;25452;25453 30574;30575;30576;30577;30578 30577 2864 5 EMGTPLADTPTRPVTR Unmodified 1740.8829 0.88286834 2617 Q9BPU6 DPYSL5 Dihydropyrimidinase-related protein 5 yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 37.319 37.381 3 1.4027E-42 9643 20211116_3433_TMUAki_TMT10x_P_F5 220.59 194.98 3576300 5697800 17344 7270200 7581900 5682800 4386900 3193000 2856700 2777900 4783000 3329800 5322600 348340 7282000 7189300 5831200 4569600 3359700 3041500 2730100 4554300 5 5 2 5 5 5 5 5 5 5 5 2384600 3903200 17344 4725800 6731000 5020300 3529300 2377500 2130200 2017300 3311600 2220300 3645200 256110 4767400 6373400 5036800 3704000 2539800 2270300 1985100 3158000 3 3 2 3 3 3 3 3 3 3 3 1191600 1794600 0 2544500 850900 662490 857660 815570 726490 760540 1471400 1109500 1677300 92232 2514700 815940 794420 865550 819840 771250 745050 1396300 2 2 0 2 2 2 2 2 2 2 2 528270000 412070000 116200000 4559 2617 4257 25454;25455;25456 30579;30580;30581;30582;30583 30581 5 EMIDIYSTR Oxidation (M) 1142.5278 0.52777445 203 O43242;O43242-2 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes no 0 0 1 0 By MS/MS 3 0 1 1 40.724 40.778 2 0.0088663 12171 20211116_3430_TMUAki_TMT10x_P_F3 76.679 47.53 214370 302890 0 384910 479950 419690 251430 222540 264500 204550 267310 199590 282930 19598 387400 454330 420980 267390 235680 268610 200520 257770 1 1 0 1 1 1 1 1 1 1 1 214370 302890 0 384910 479950 419690 251430 222540 264500 204550 267310 199590 282930 19598 387400 454330 420980 267390 235680 268610 200520 257770 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38023000 38023000 0 4560 203 4258 25457 30584 30584 162 1 EMIDIYSTREPQLAFHQR Oxidation (M) 2249.0899 0.089901 203 O43242;O43242-2 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes no 0 0 1 1 By MS/MS By MS/MS 5.2 0.748 1 2 2 2 3 46.571 46.722 4 4.425E-31 12201 20211116_3444_TMUAki_TMT10x_S_F5 183.74 168.34 11141000 19096000 112440 20551000 15334000 16500000 12142000 16641000 17567000 14296000 17276000 10374000 17824000 842820 20802000 14627000 17062000 12651000 16842000 17624000 14059000 16675000 7 7 4 7 7 7 7 7 7 7 7 4822700 7402500 25056 8185200 8778400 10637000 6736300 6649900 7203800 5715400 7013200 4490400 6910300 246020 8331600 8365700 10596000 6954200 6934500 7301400 5620400 6771300 3 3 1 3 3 3 3 3 3 3 3 6318100 11694000 87382 12366000 6555700 5863000 5405300 9990600 10363000 8580900 10263000 5883300 10914000 596800 12470000 6261500 6466700 5696400 9907300 10322000 8438600 9903200 4 4 3 4 4 4 4 4 4 4 4 2184200000 1250100000 934110000 4561 203 4259 25458;25459;25460;25461;25462 30585;30586;30587;30588;30589;30590;30591 30589 162 7 EMITMLHYDLLHHPYEPSGNKK 2 Oxidation (M) 2684.2727 0.27269275 2574 Q99459 CDC5L Cell division cycle 5-like protein yes yes 0 0 2 1 By MS/MS 7 0 1 1 44.416 44.941 6 2.572E-05 13747 20211116_3446_TMUAki_TMT10x_S_F7 74.662 64.24 1831800 3267100 51395 3327900 1975500 1868100 1426600 3713700 4063300 3289000 3310900 1706000 3048800 201780 3368900 1883500 2034600 1557400 3669900 3991600 3229700 3217200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1831800 3267100 51395 3327900 1975500 1868100 1426600 3713700 4063300 3289000 3310900 1706000 3048800 201780 3368900 1883500 2034600 1557400 3669900 3991600 3229700 3217200 2 2 2 2 2 2 2 2 2 2 2 130230000 0 130230000 4562 2574 4260 25463 30592;30593 30592 2801;2802 2 EMLGGEIIPR Oxidation (M) 1129.5801 0.58014438 1847 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 1 0 By MS/MS By MS/MS 3.25 0.829 1 1 2 3 1 46.166 46.174 2 0.094357 12860 20211116_3431_TMUAki_TMT10x_P_F4 52.49 26.868 12010000 19684000 235110 22232000 20373000 22119000 14662000 16879000 17286000 14569000 17757000 11184000 18377000 1327200 22499000 19405000 22422000 15252000 17357000 17487000 14324000 17115000 4 4 3 4 4 4 4 4 4 4 4 7680700 12289000 75706 13530000 15747000 19107000 10790000 11323000 12037000 9520200 10976000 7152000 11472000 815620 13799000 14979000 18946000 11243000 11851000 12153000 9372200 10621000 3 3 2 3 3 3 3 3 3 3 3 4329100 7394900 159410 8702200 4625400 3011500 3871400 5556500 5248900 5049100 6780500 4032000 6905100 511630 8700300 4425800 3476100 4009000 5505900 5333900 4952100 6493500 1 1 1 1 1 1 1 1 1 1 1 941220000 818230000 122990000 4563 1847 4261 25464;25465;25466;25467 30594;30595 30595 2454 2 EMLGGEIIPR Unmodified 1113.5852 0.58522975 1847 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 54.547 54.633 2 4.7227E-07 16722 20211116_3442_TMUAki_TMT10x_S_F4 110.76 88.519 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4564 1847 4261 25468;25469 30596;30597 30597 2 EMLNLYIENEGK Oxidation (M) 1467.6915 0.69154532 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 1 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 57.644 57.571 3 6.8614E-05 17980 20211116_3442_TMUAki_TMT10x_S_F4 96.23 75.17 2943200 5041400 0 4962400 2699200 3415500 2782400 4025800 3747300 3911400 4083100 2740300 4703900 230050 5044900 2589500 3588600 2847800 4058900 3782000 3824800 3928400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2943200 5041400 0 4962400 2699200 3415500 2782400 4025800 3747300 3911400 4083100 2740300 4703900 230050 5044900 2589500 3588600 2847800 4058900 3782000 3824800 3928400 1 1 0 1 1 1 1 1 1 1 1 346770000 0 346770000 4565 916 4262 25470;25471;25472;25473 30598;30599;30600;30601 30601 1150 4 EMLQQSK Unmodified 862.42185 0.42185282 553;544 P07900;P07900-2;P08238;Q58FF7 HSP90AA1;HSP90AB1;HSP90AB3P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 no no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 34.279 34.456 2 0.0037198 7243 20211116_3444_TMUAki_TMT10x_S_F5 117.04 65.041 668930 1097300 0 984550 692270 472080 751010 284730 269350 288180 688140 622810 1023500 52005 1004700 665010 508320 743800 299050 309950 281310 650860 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 668930 1097300 0 984550 692270 472080 751010 284730 269350 288180 688140 622810 1023500 52005 1004700 665010 508320 743800 299050 309950 281310 650860 1 1 0 1 1 1 1 1 1 1 1 39430000 0 39430000 4566 544;553 4263 25474;25475;25476 30602;30603;30604 30604 3 EMLQQSK Oxidation (M) 878.41677 0.41676744 553;544 P07900;P07900-2;P08238;Q58FF7 HSP90AA1;HSP90AB1;HSP90AB3P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 no no 0 0 1 0 By MS/MS 3 0 1 1 30.526 30.265 2 0.056624 9131 20211116_3441_TMUAki_TMT10x_S_F3 75.043 44.968 262480 480200 0 343720 309550 358680 341870 188250 194130 204160 311090 244370 447560 19404 360520 297430 360650 340510 200470 208110 198740 296480 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 262480 480200 0 343720 309550 358680 341870 188250 194130 204160 311090 244370 447560 19404 360520 297430 360650 340510 200470 208110 198740 296480 1 1 0 1 1 1 1 1 1 1 1 45017000 0 45017000 4567 544;553 4263 25477 30605 30605 484 1 EMNDAAMFYTNR 2 Oxidation (M) 1493.5915 0.5915137 1482 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 yes no 0 0 2 0 By MS/MS By MS/MS 2.57 0.904 1 2 3 1 3 4 37.337 37.237 2;3 0.00049951 11883 20211116_3441_TMUAki_TMT10x_S_F3 80.96 75.064 655260 1079400 2434.6 1332300 803720 740810 672100 948480 1186700 782340 1058700 610080 1008100 53351 1332400 767130 795830 704550 948900 1180200 770920 1025200 4 4 1 4 4 4 4 4 4 4 4 119460 202200 0 291010 340270 309870 206610 96365 91928 95716 173130 111200 189000 8449.6 290890 322610 309710 213010 108730 101420 93508 164500 2 2 0 2 2 2 2 2 2 2 2 535790 877200 2434.6 1041300 463450 430940 465490 852120 1094800 686630 885550 498890 819140 44902 1041600 444520 486120 491540 840170 1078800 677410 860730 2 2 1 2 2 2 2 2 2 2 2 174410000 82175000 92233000 4568 1482 4264 25478;25479;25480;25481;25482;25483;25484 30606;30607;30608;30609;30610 30610 2008;2009 5 EMNDAAMFYTNR Oxidation (M) 1477.5966 0.59659908 1482 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 yes no 0 0 1 0 By MS/MS By MS/MS 3 0 3 2 1 43.432 43.292 2 1.5601E-05 13199 20211116_3430_TMUAki_TMT10x_P_F3 109.39 101.56 873680 1425400 37103 2194600 2138200 1647600 1140500 1210700 1418500 925500 1601100 813760 1333000 124720 2176400 2027400 1702400 1217700 1244500 1437400 915640 1538900 2 2 2 2 2 2 2 2 2 2 2 476480 740340 15955 1104900 1885600 1382600 885030 582220 662800 436800 767410 443770 692180 74109 1105600 1783800 1373400 943160 628000 687720 432590 737050 1 1 1 1 1 1 1 1 1 1 1 397200 685090 21147 1089800 252560 264950 255520 628480 755710 488710 833710 369990 640770 50613 1070800 243520 328960 274520 616460 749680 483050 801840 1 1 1 1 1 1 1 1 1 1 1 71616000 43579000 28037000 4569 1482 4264 25485;25486;25487 30611;30612;30613 30611 2008;2009 3 EMNPALGIDCLHK Oxidation (M) 1512.7065 0.70648388 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 1 0 By MS/MS By MS/MS 4.5 0.957 1 2 2 1 3 3 46.687 46.813 3 0.00077147 13373 20211116_3433_TMUAki_TMT10x_P_F5 76.391 57.66 26798000 41376000 244730 48942000 48883000 50624000 30553000 38421000 39771000 33566000 37190000 24952000 38637000 2537700 49419000 46411000 51194000 32235000 39534000 39966000 32982000 35956000 6 6 3 6 6 6 6 6 6 6 6 18131000 27480000 194680 31014000 40696000 43215000 23813000 25406000 25504000 22596000 24230000 16882000 25655000 1855200 31572000 38599000 42872000 25090000 26646000 25827000 22184000 23413000 4 4 2 4 4 4 4 4 4 4 4 8666700 13896000 50046 17928000 8187200 7408400 6740000 13015000 14268000 10970000 12960000 8069300 12982000 682540 17847000 7812000 8322000 7145400 12888000 14139000 10798000 12542000 2 2 1 2 2 2 2 2 2 2 2 3423100000 2331600000 1091400000 4570 1079 4265 25488;25489;25490;25491;25492;25493 30614;30615;30616;30617;30618;30619 30616 1405 6 EMNPALGIDCLHK Unmodified 1496.7116 0.71156925 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 52.915 53.051 3 1.2609E-09 14696 20211116_3434_TMUAki_TMT10x_P_F6 134.9 108.31 34432000 53819000 383930 69324000 66350000 58003000 44918000 31483000 28484000 30127000 44088000 32062000 50277000 3567400 69457000 63098000 59192000 46174000 33307000 30251000 29479000 42047000 9 9 6 9 9 9 9 9 9 9 9 23795000 37186000 212800 47505000 57581000 50904000 37275000 22584000 20431000 21248000 30448000 22156000 34737000 2553800 47785000 54708000 51012000 38350000 24351000 21878000 20806000 29062000 6 6 4 6 6 6 6 6 6 6 6 10637000 16633000 171130 21819000 8768700 7099100 7642800 8898900 8053500 8879200 13640000 9905200 15540000 1013700 21672000 8389800 8180500 7824000 8956300 8373300 8672700 12985000 3 3 2 3 3 3 3 3 3 3 3 3351500000 1986900000 1364600000 4571 1079 4265 25494;25495;25496;25497;25498;25499 30620;30621;30622;30623;30624;30625;30626;30627;30628 30624 9 EMQAIRSNVLDK Oxidation (M) 1418.7188 0.71876312 3392 yes no 0 0 1 1 By MS/MS 4 0 1 1 84.496 84.505 3 0.096621 28521 20211116_3431_TMUAki_TMT10x_P_F4 40.577 7.1681 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4572 3392 4266 25500 30629 30629 3318 1 EMQNLSFQDCYSSK Oxidation (M) 1751.7131 0.7130854 865 P30084 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 0 0 1 0 By MS/MS 4 0 2 2 47.14 47.33 3 1.6559E-06 13693 20211116_3442_TMUAki_TMT10x_S_F4 89.624 77.647 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4573 865 4267 25501;25502 30630;30631 30630 1030 2 EMQPTHPIR Unmodified 1107.5495 0.54951295 1395;825;895 P27348;P31946;P31946-2;P63104;P63104-2 YWHAQ;YWHAB;YWHAZ 14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta no no 0 0 0 0 By MS/MS By MS/MS 3 1.22 1 2 2 2 1 6 2 27.042 26.916 2;3 3.3178E-07 8110 20211116_3441_TMUAki_TMT10x_S_F3 197.27 152.29 1618400 2565900 8887.9 2440000 1857500 2382100 1733500 1359600 1315200 1273800 1804500 1506800 2393800 125160 2497300 1777200 2407300 1751900 1431400 1373700 1247600 1725600 10 10 4 10 10 10 10 10 10 10 10 1303300 2020200 8887.9 1895800 1500200 2176400 1365800 1207100 1154500 1105900 1459900 1213400 1884600 104420 1947100 1434700 2178100 1385900 1273200 1194600 1084300 1398800 8 8 4 8 8 8 8 8 8 8 8 315090 545710 0 544180 357280 205690 367750 152560 160710 167860 344680 293330 509200 20746 550200 342450 229230 366070 158250 179080 163310 326800 2 2 0 2 2 2 2 2 2 2 2 144560000 65558000 79002000 4574 825;895;1395 4268 25503;25504;25505;25506;25507;25508;25509;25510 30632;30633;30634;30635;30636;30637;30638;30639;30640;30641 30640 10 EMQPTHPIR Oxidation (M) 1123.5444 0.54442757 1395;825;895 P27348;P31946;P31946-2;P63104;P63104-2 YWHAQ;YWHAB;YWHAZ 14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta no no 0 0 1 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 2 3 24.238 24.1 2;3 0.0003637 6984 20211116_3441_TMUAki_TMT10x_S_F3 106.18 89.402 2518800 4307600 28903 3817300 3961700 4615000 3183500 5230500 2712100 3073300 3034700 2345400 4017600 248850 3940800 3780400 4666100 3255300 5222400 2791100 3090400 2917500 5 5 4 5 5 5 5 5 5 5 5 1076800 1779800 20181 1552100 2113600 2708900 1438000 3140400 1202000 1496400 1179700 1002800 1659900 122600 1616700 2010900 2698000 1486600 3122000 1232400 1529200 1138700 2 2 2 2 2 2 2 2 2 2 2 1442000 2527800 8722 2265200 1848100 1906100 1745600 2090100 1510000 1576900 1855100 1342700 2357700 126250 2324100 1769500 1968100 1768700 2100400 1558700 1561200 1778800 3 3 2 3 3 3 3 3 3 3 3 148120000 78705000 69411000 4575 825;895;1395 4268 25511;25512;25513;25514;25515 30642;30643;30644;30645 30644 992 4 EMVELPLR Oxidation (M) 1001.5216 0.52156686 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 1 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 46.228 46.179 2 0.029513 14402 20211116_3430_TMUAki_TMT10x_P_F3 71.922 42.081 3071300 4701600 0 5605800 5285600 5381600 3527400 4290600 4917400 3995500 4635000 2859500 4390500 256300 5651600 5022000 5471800 3713000 4408600 4931700 3914300 4479900 2 2 0 2 2 2 2 2 2 2 2 1569800 2418300 0 2758900 4059000 3915300 2085500 2066300 2266700 1931000 2324300 1461600 2257800 161690 2807700 3842200 3875800 2224200 2190100 2300100 1891500 2240400 1 1 0 1 1 1 1 1 1 1 1 1501500 2283300 0 2846900 1226600 1466300 1441900 2224300 2650700 2064500 2310600 1397900 2132700 94616 2843900 1179800 1596000 1488700 2218500 2631700 2022900 2239500 1 1 0 1 1 1 1 1 1 1 1 228610000 94444000 134160000 4576 1235 4269 25516;25517;25518 30646;30647 30646 1669 2 EMVELPLRHPALFK Oxidation (M) 1694.9178 0.91779728 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 1 1 By MS/MS By MS/MS 6 2.61 2 2 2 4 5 5 51.566 51.677 3;4 1.0507E-09 14266 20211116_3447_TMUAki_TMT10x_S_F8 136.83 119.8 48149000 77923000 360550 82544000 68120000 82694000 51863000 90619000 88589000 75534000 73377000 44831000 72727000 3822300 83885000 64909000 84412000 54594000 91284000 87978000 74392000 71255000 12 12 4 12 12 12 12 12 12 12 12 20220000 33075000 0 35994000 37736000 54302000 27829000 37061000 37807000 31412000 29915000 18825000 30873000 1283400 36787000 35922000 53803000 29055000 38382000 37746000 30912000 29102000 5 5 0 5 5 5 5 5 5 5 5 27929000 44848000 360550 46550000 30384000 28392000 24034000 53558000 50782000 44122000 43462000 26006000 41854000 2538900 47097000 28986000 30609000 25539000 52902000 50232000 43480000 42153000 7 7 4 7 7 7 7 7 7 7 7 25498000000 12279000000 13219000000 4577 1235 4270 25519;25520;25521;25522;25523;25524;25525;25526;25527;25528 30648;30649;30650;30651;30652;30653;30654;30655;30656;30657;30658;30659 30657 1669 12 EMVELPLRHPALFK Unmodified 1678.9229 0.92288266 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 1 By MS/MS By MS/MS 4.71 3.24 3 2 2 3 4 56.777 56.955 3;4 5.0805E-24 16403 20211116_3447_TMUAki_TMT10x_S_F8 196.33 168.69 37831000 57840000 278990 70528000 47922000 42354000 41664000 20305000 15146000 22967000 39016000 35226000 54019000 3504600 70633000 45807000 44390000 41768000 21837000 17416000 22321000 36899000 7 7 4 7 7 7 7 7 7 7 7 19713000 30139000 62813 35741000 27371000 29926000 25644000 10807000 8528300 12084000 20494000 18355000 28144000 1791500 35979000 26205000 30416000 25572000 11991000 9849700 11750000 19400000 4 4 2 4 4 4 4 4 4 4 4 18118000 27701000 216180 34787000 20551000 12428000 16020000 9498100 6617900 10882000 18522000 16871000 25874000 1713100 34654000 19602000 13974000 16195000 9846300 7566400 10571000 17499000 3 3 2 3 3 3 3 3 3 3 3 7964700000 4599200000 3365500000 4578 1235 4270 25529;25530;25531;25532;25533;25534;25535 30660;30661;30662;30663;30664;30665;30666;30667 30667 8 EMVIFFGHPR Oxidation (M) 1247.6121 0.61211321 2114 Q8WVZ9;Q86V97 KBTBD7;KBTBD6 Kelch repeat and BTB domain-containing protein 7;Kelch repeat and BTB domain-containing protein 6 yes no 0 0 1 0 By MS/MS 7 0 1 1 43.693 44.241 3 0.0031028 13434 20211116_3446_TMUAki_TMT10x_S_F7 70.389 56.726 613270 1008000 11657 1048600 592640 491160 491070 731030 715530 692040 887980 571100 940710 61419 1058600 566410 540130 510370 729990 724220 677490 851270 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 613270 1008000 11657 1048600 592640 491160 491070 731030 715530 692040 887980 571100 940710 61419 1058600 566410 540130 510370 729990 724220 677490 851270 1 1 1 1 1 1 1 1 1 1 1 48208000 0 48208000 4579 2114 4271 25536 30668 30668 2596 1 EMVKAEEDTQFNYHR Oxidation (M) 1911.8421 0.84212573 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 1 1 By MS/MS By MS/MS 3.25 0.829 1 1 2 3 1 33.742 33.704 4 3.4299E-08 9504 20211116_3430_TMUAki_TMT10x_P_F3 121.31 101.26 1030800 1886600 11498 1891700 2478500 2371600 1457500 1460900 1694900 1383400 1744900 959740 1760400 91174 1936600 2350200 2366000 1539200 1529000 1715600 1354300 1681700 6 6 2 6 6 6 6 6 6 6 6 799490 1508900 10672 1534100 2214200 2184000 1205100 1176500 1375500 1121700 1414200 744380 1408100 78724 1572900 2097500 2162200 1280400 1245400 1393300 1097800 1363000 3 3 1 3 3 3 3 3 3 3 3 231350 377640 826.03 357630 264260 187590 252460 284410 319370 261630 330730 215350 352300 12450 363710 252620 203770 258770 283600 322380 256460 318690 3 3 1 3 3 3 3 3 3 3 3 191260000 173190000 18073000 4580 1723 4272 25537;25538;25539;25540 30669;30670;30671;30672;30673 30669 2313 5 EMVKAEEDTQFNYHR Unmodified 1895.8472 0.84721111 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 1 By matching By MS/MS 3.5 0.5 1 1 1 1 38.333 38.433 4 1.2765E-07 10143 20211116_3442_TMUAki_TMT10x_S_F4 120.66 102.3 131890 239650 3027.4 234180 161590 131940 141590 127690 115750 120780 168290 122830 223600 14172 237760 154620 140620 143870 129830 120750 118240 160720 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 131890 239650 3027.4 234180 161590 131940 141590 127690 115750 120780 168290 122830 223600 14172 237760 154620 140620 143870 129830 120750 118240 160720 1 1 1 1 1 1 1 1 1 1 1 37569000 23157000 14412000 4581 1723 4272 25541;25542 30674 30674 1 EMVKAEEDTQFNYHRK Oxidation (M) 2039.9371 0.93708875 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 1 2 By MS/MS By matching 4.67 0.471 1 2 2 1 32.678 32.721 5 8.2438E-11 7748 20211116_3433_TMUAki_TMT10x_P_F5 135.47 120.04 469530 792900 6640.1 845750 1100700 1246400 645480 561060 781080 578940 617480 437230 740060 53956 865060 1044400 1229700 682740 605580 782880 564690 600730 1 1 1 1 1 1 1 1 1 1 1 469530 792900 6640.1 845750 1100700 1246400 645480 561060 781080 578940 617480 437230 740060 53956 865060 1044400 1229700 682740 605580 782880 564690 600730 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 96576000 91317000 5258500 4582 1723 4273 25543;25544;25545 30675 30675 2313 1 EMVLELIR Unmodified 1001.558 0.55795237 2408;2407 Q96AE4-2;Q96AE4 FUBP1 Far upstream element-binding protein 1 no no 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 67.857 67.922 2 0.0018186 21221 20211116_3445_TMUAki_TMT10x_S_F6 109.21 0 15057000 24939000 140400 25415000 17692000 22399000 18801000 11303000 9460700 12674000 17812000 14021000 23272000 1416100 25849000 17000000 22755000 18723000 12093000 10330000 12322000 16924000 3 3 3 3 3 3 3 3 3 3 3 10437000 16966000 110340 17072000 13459000 18543000 13493000 8316600 6734000 8958100 12279000 9718200 15831000 1010400 17431000 12913000 18570000 13475000 8991000 7343200 8722500 11673000 2 2 2 2 2 2 2 2 2 2 2 4620500 7972700 30061 8343200 4232500 3856000 5308100 2986600 2726700 3716200 5532900 4302400 7440800 405660 8418100 4087200 4185500 5248100 3102300 2986500 3599400 5250500 1 1 1 1 1 1 1 1 1 1 1 816100000 437880000 378230000 4583 2408;2407 4274 25546;25547;25548 30676;30677;30678;30679 30679 4 EMVLELIRDQGGFR Oxidation (M) 1677.8508 0.85083993 2408;2407 Q96AE4-2;Q96AE4 FUBP1 Far upstream element-binding protein 1 no no 0 0 1 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 64.73 64.986 3 5.1285E-09 21883 20211116_3446_TMUAki_TMT10x_S_F7 122.1 102.52 20825000 33252000 197030 33540000 25131000 33790000 22481000 25599000 24547000 23789000 26664000 19391000 31029000 1923600 34199000 24039000 34223000 23006000 26387000 24957000 23308000 25656000 5 5 4 5 5 5 5 5 5 5 5 13051000 20012000 83725 19938000 15954000 26919000 15582000 16193000 15787000 15103000 16696000 12152000 18673000 1153900 20450000 15290000 26752000 15831000 16973000 16084000 14795000 16078000 3 3 2 3 3 3 3 3 3 3 3 7773500 13240000 113300 13602000 9176400 6870700 6899100 9405700 8760000 8685900 9967100 7238700 12356000 769720 13750000 8748400 7471500 7174800 9413500 8873200 8512800 9577500 2 2 2 2 2 2 2 2 2 2 2 2161500000 1097900000 1063600000 4584 2408;2407 4275 25549;25550;25551;25552 30680;30681;30682;30683;30684 30684 2733 5 EMVLELIRDQGGFR Unmodified 1661.8559 0.85592531 2408;2407 Q96AE4-2;Q96AE4 FUBP1 Far upstream element-binding protein 1 no no 0 0 0 1 By MS/MS By MS/MS 7.4 0.49 3 2 3 2 73.067 73.082 3 1.2289E-19 24886 20211116_3435_TMUAki_TMT10x_P_F7 149.35 126.81 37237000 57567000 332640 62463000 39919000 35777000 35993000 20786000 19374000 23828000 37119000 34673000 53735000 3298500 62977000 38189000 37756000 36200000 21981000 21067000 23147000 35258000 5 5 4 5 5 5 5 5 5 5 5 12849000 19116000 48918 20742000 12863000 18619000 12694000 7062700 6505600 8174000 12195000 11963000 17843000 974800 21014000 12324000 18839000 12693000 7797400 7091000 7937300 11588000 2 2 1 2 2 2 2 2 2 2 2 24388000 38451000 283730 41720000 27056000 17158000 23299000 13723000 12869000 15654000 24924000 22710000 35892000 2323700 41963000 25865000 18917000 23506000 14184000 13976000 15209000 23670000 3 3 3 3 3 3 3 3 3 3 3 2174300000 732440000 1441800000 4585 2408;2407 4275 25553;25554;25555;25556;25557 30685;30686;30687;30688;30689;30690;30691 30686 7 EMVVFPLLYPEVFEK Oxidation (M) 1854.9478 0.94776 2014 Q6PL18;Q6PL18-2 ATAD2 ATPase family AAA domain-containing protein 2 yes no 0 0 1 0 By MS/MS By MS/MS 7 0 2 1 1 80.786 80.813 3 0.0058535 28601 20211116_3446_TMUAki_TMT10x_S_F7 57.788 45.622 4647700 7443500 0 7112200 4778900 6155600 5423000 3859700 3549600 4221600 5481400 4327100 6944300 341490 7264700 4595500 6278400 5409100 4051000 3761700 4108100 5227900 2 2 0 2 2 2 2 2 2 2 2 2276200 3539300 0 3596600 2084000 3600600 2316900 2001600 1689500 2171600 2462200 2119000 3302800 142900 3665200 2001300 3631900 2318600 2120800 1773700 2113900 2351300 1 1 0 1 1 1 1 1 1 1 1 2371500 3904200 0 3515600 2694900 2555000 3106100 1858100 1860100 2050000 3019200 2208000 3641600 198590 3599600 2594200 2646500 3090600 1930100 1988000 1994200 2876600 1 1 0 1 1 1 1 1 1 1 1 893900000 561370000 332530000 4586 2014 4276 25558;25559 30692;30693 30693 2553 2 EMVVFPLLYPEVFEK Unmodified 1838.9528 0.95284538 2014 Q6PL18;Q6PL18-2 ATAD2 ATPase family AAA domain-containing protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 7 0.707 1 2 1 2 2 81.952 81.962 3 2.7722E-07 29055 20211116_3446_TMUAki_TMT10x_S_F7 118.13 102 3985400 6417600 85724 6583600 4137900 4546300 4430000 2355700 2230600 2779300 4137000 3711400 5988900 410970 6674100 3980100 4707900 4410200 2518400 2433200 2697000 3931800 3 3 2 3 3 3 3 3 3 3 3 1881000 3104600 59059 3148600 1933200 2712000 2273700 1312600 1198600 1454200 1926600 1751800 2897100 211720 3202400 1865700 2758300 2255200 1409400 1292300 1414400 1836000 1 1 1 1 1 1 1 1 1 1 1 2104400 3313000 26665 3435000 2204700 1834200 2156400 1043200 1032000 1325100 2210400 1959600 3091900 199250 3471700 2114300 1949600 2155000 1109000 1140900 1282600 2095800 2 2 1 2 2 2 2 2 2 2 2 372920000 162700000 210220000 4587 2014 4276 25560;25561;25562;25563 30694;30695;30696 30695 3 EMVVQVER Oxidation (M) 1004.4961 0.4960804 1501 Q02952;Q02952-3;Q02952-2 AKAP12 A-kinase anchor protein 12 yes no 0 0 1 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 31.891 31.813 2 0.02602 8200 20211116_3429_TMUAki_TMT10x_P_F2 74.376 52.83 1689800 2518100 4840.8 2731600 2122400 1924600 1669100 1140800 1238600 1229700 1841000 1573400 2350400 139000 2759600 2023400 1992800 1703400 1202100 1300200 1197300 1757300 6 6 2 6 6 6 6 6 6 6 6 1012000 1412600 0 1592500 1436600 1337900 930870 624680 664280 671690 1004300 942260 1318700 85022 1608100 1364400 1362600 962410 672530 699520 654070 958300 2 2 0 2 2 2 2 2 2 2 2 677790 1105500 4840.8 1139200 685880 586690 738200 516130 574280 558000 836640 631090 1031700 53979 1151500 659010 630170 740980 529580 600710 543250 798950 4 4 2 4 4 4 4 4 4 4 4 101950000 60503000 41450000 4588 1501 4277 25564;25565;25566;25567;25568 30697;30698;30699 30697 2035 3 EMVVQVER Unmodified 988.50117 0.50116577 1501 Q02952;Q02952-3;Q02952-2 AKAP12 A-kinase anchor protein 12 yes no 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 37.678 37.546 2 0.0018516 12092 20211116_3441_TMUAki_TMT10x_S_F3 116.73 80.335 2880500 4415200 14313 5084300 4120200 3189700 3060100 1994500 1928700 2006400 3371000 2682100 4122300 261740 5111200 3924300 3339500 3124400 2088600 2062800 1959100 3207200 3 3 2 3 3 3 3 3 3 3 3 1266700 1775600 8649.5 2053500 2225400 1930500 1397600 916620 921510 921520 1488900 1179500 1657800 126510 2073500 2113500 1951400 1446200 983270 978450 899800 1418700 1 1 1 1 1 1 1 1 1 1 1 1613800 2639600 5663 3030700 1894800 1259300 1662600 1077900 1007200 1084900 1882100 1502600 2464500 135240 3037700 1810900 1388100 1678300 1105300 1084300 1059300 1788500 2 2 1 2 2 2 2 2 2 2 2 149260000 62111000 87153000 4589 1501 4277 25569;25570;25571 30700;30701;30702 30702 3 EMYTLGITNFPIPGEPGFPLNAIYAK Unmodified 2852.4459 0.44588931 169 O15145 ARPC3 Actin-related protein 2/3 complex subunit 3 yes yes 0 0 0 0 By MS/MS 2 0 1 1 81.961 81.949 4 0.0052153 27293 20211116_3440_TMUAki_TMT10x_S_F2 46.295 33.107 1118100 1566200 28079 1611300 1144100 967820 1432200 708300 708780 900240 1096500 1041200 1461600 119230 1631000 1106000 1019800 1415300 738990 766470 871310 1045800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1118100 1566200 28079 1611300 1144100 967820 1432200 708300 708780 900240 1096500 1041200 1461600 119230 1631000 1106000 1019800 1415300 738990 766470 871310 1045800 1 1 1 1 1 1 1 1 1 1 1 100020000 0 100020000 4590 169 4278 25572 30703 30703 1 ENAEVDGDDDAEEMEAKAED Oxidation (M) 2196.8125 0.81246091 504 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 0 0 1 1 By MS/MS By MS/MS 1 0 2 1 1 38.541 38.541 3 8.1941E-11 11414 20211116_3439_TMUAki_TMT10x_S_F1 108.13 106.29 303810 472410 2313.4 760090 1573900 926580 646060 334780 421420 260870 483350 282870 441890 41557 757590 1485700 920370 696890 368030 440750 257820 464350 2 2 1 2 2 2 2 2 2 2 2 303810 472410 2313.4 760090 1573900 926580 646060 334780 421420 260870 483350 282870 441890 41557 757590 1485700 920370 696890 368030 440750 257820 464350 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 308350000 308350000 0 4591 504 4279 25573;25574 30704;30705;30706 30706 406 3 ENAEVDGDDDAEEMEAKAED Unmodified 2180.8175 0.81754629 504 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 50.761 50.761 3 1.2081E-12 14346 20211116_3428_TMUAki_TMT10x_P_F1 123.43 115.81 995820 1742400 32318 2497900 2889900 2826300 1800300 1074200 1181300 1151100 1804500 927450 1628700 139210 2499800 2745500 2819600 1863900 1182900 1250900 1121000 1721500 1 1 1 1 1 1 1 1 1 1 1 995820 1742400 32318 2497900 2889900 2826300 1800300 1074200 1181300 1151100 1804500 927450 1628700 139210 2499800 2745500 2819600 1863900 1182900 1250900 1121000 1721500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 228390000 228390000 0 4592 504 4279 25575;25576 30707;30708 30707 2 ENAPAIIFIDEIDAIATK Unmodified 1943.0252 0.025158703 1032 P43686;P43686-2 PSMC4 26S protease regulatory subunit 6B yes no 0 0 0 0 By MS/MS By MS/MS 3 1.73 2 2 1 1 1 1 2 6 82.916 82.911 3 5.6999E-05 27624 20211116_3440_TMUAki_TMT10x_S_F2 78.708 61.219 38228000 62146000 2604200 64795000 45948000 56056000 52522000 36001000 36122000 40898000 50462000 35614000 57999000 5704500 65784000 44380000 57195000 52424000 37762000 37974000 39742000 48235000 9 9 9 9 9 9 9 9 9 9 9 13622000 22301000 1021800 22007000 12810000 24875000 15988000 12990000 12414000 14509000 17742000 12691000 20808000 2070300 22514000 12424000 24897000 15940000 13853000 12975000 14108000 16950000 3 3 3 3 3 3 3 3 3 3 3 24606000 39845000 1582400 42788000 33139000 31181000 36535000 23010000 23708000 26389000 32719000 22923000 37190000 3634200 43269000 31956000 32298000 36484000 23909000 25000000 25634000 31284000 6 6 6 6 6 6 6 6 6 6 6 2317500000 966900000 1350600000 4593 1032 4280 25577;25578;25579;25580;25581;25582;25583;25584 30709;30710;30711;30712;30713;30714;30715 30713 7 ENATVAHLVGALR Unmodified 1349.7415 0.74154747 1604 Q13158 FADD FAS-associated death domain protein yes yes 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 49.846 50.074 3 1.2614E-12 15876 20211116_3446_TMUAki_TMT10x_S_F7 129.77 91.777 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4594 1604 4281 25585;25586;25587 30716;30717;30718 30718 3 ENAYDLEANLAVLK Unmodified 1561.7988 0.79878758 3084 Q9UBQ5;Q9UBQ5-2 EIF3K Eukaryotic translation initiation factor 3 subunit K yes no 0 0 0 0 By MS/MS By MS/MS 3.89 0.737 3 4 2 4 5 74.763 74.718 2;3 2.2003E-44 24483 20211116_3431_TMUAki_TMT10x_P_F4 276.41 219.06 32829000 55505000 206040 51731000 35697000 40988000 37119000 27950000 29909000 30633000 39369000 30567000 51778000 2806700 52880000 34267000 42126000 37354000 29156000 31078000 29807000 37685000 9 9 4 9 9 9 9 9 9 9 9 9228300 14666000 64390 13573000 9276800 16219000 10525000 7554100 8112000 7855600 9804900 8592700 13681000 797200 13964000 8928500 16165000 10536000 8126800 8418300 7659800 9406000 2 2 1 2 2 2 2 2 2 2 2 23601000 40839000 141650 38158000 26420000 24770000 26593000 20396000 21797000 22777000 29565000 21975000 38097000 2009500 38916000 25338000 25961000 26817000 21029000 22660000 22147000 28279000 7 7 3 7 7 7 7 7 7 7 7 3935000000 1537500000 2397500000 4595 3084 4282 25588;25589;25590;25591;25592;25593;25594;25595;25596 30719;30720;30721;30722;30723;30724;30725;30726;30727;30728;30729 30722 11 ENCLILAVSPANSDLANSDALK Unmodified 2314.1475 0.14747546 1518 Q05193;Q05193-5;Q05193-3;Q05193-2 DNM1 Dynamin-1 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 74.971 75.003 3 0.05346 24095 20211116_3445_TMUAki_TMT10x_S_F6 38.562 19.966 1932400 2939900 33937 3231400 1789200 2689300 2172500 1241500 1237700 1270500 2028600 1799500 2744300 189830 3267800 1727200 2740600 2154700 1336200 1328100 1239600 1932500 1 1 1 1 1 1 1 1 1 1 1 1932400 2939900 33937 3231400 1789200 2689300 2172500 1241500 1237700 1270500 2028600 1799500 2744300 189830 3267800 1727200 2740600 2154700 1336200 1328100 1239600 1932500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 563380000 563380000 0 4596 1518 4283 25597;25598 30730;30731 30731 2 ENDAHLVEVNLNNIK Unmodified 1720.8744 0.87441214 3022 Q9NYL9 TMOD3 Tropomodulin-3 yes yes 0 0 0 0 By MS/MS 3 0 1 1 55.025 54.829 3 0.00028748 18030 20211116_3430_TMUAki_TMT10x_P_F3 70.47 56.791 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4597 3022 4284 25599 30732 30732 1 ENDAVTIQVLNQLIQK Unmodified 1824.9945 0.99452728 2541 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 0 0 0 0 By MS/MS 7 0 1 1 79.545 79.585 3 0.053657 28073 20211116_3446_TMUAki_TMT10x_S_F7 39.982 24.827 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4598 2541 4285 25600 30733 30733 1 ENDIKPLTSFR Unmodified 1318.6881 0.68811492 1732 Q14739 LBR Lamin-B receptor yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.707 1 2 1 2 2 45.909 46.055 3 0.00010566 12207 20211116_3445_TMUAki_TMT10x_S_F6 97.631 79.766 7435600 11001000 60281 16600000 11102000 9245400 6919200 8489400 10406000 7903000 10402000 6923600 10286000 707830 16429000 10542000 9855300 7345000 8652000 10433000 7742600 10034000 3 3 1 3 3 3 3 3 3 3 3 2747400 3626400 0 5794600 7989900 6159100 3622300 3030700 3649400 2908700 3562400 2558100 3391900 300880 5763800 7551300 6181700 3903500 3235700 3708400 2845800 3439300 1 1 0 1 1 1 1 1 1 1 1 4688200 7374800 60281 10805000 3111600 3086300 3296800 5458700 6756400 4994300 6839300 4365500 6894300 406950 10666000 2990800 3673600 3441500 5416400 6725100 4896800 6595000 2 2 1 2 2 2 2 2 2 2 2 749390000 491870000 257520000 4599 1732 4286 25601;25602;25603;25604 30734;30735;30736 30736 3 ENDPEANIDTIYDR Unmodified 1663.7326 0.73255851 1738 Q14966;Q14966-5;Q14966-3;Q14966-4 ZNF638 Zinc finger protein 638 yes no 0 0 0 0 By MS/MS 1 0 1 1 49.661 49.399 2 1.2652E-09 15832 20211116_3439_TMUAki_TMT10x_S_F1 119.62 104.93 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4600 1738 4287 25605 30737 30737 1 ENDYYTPTGEFR Unmodified 1490.6314 0.6313879 1061 P46977;P46977-2 STT3A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 45.177 45.016 2 1.2396E-15 13947 20211116_3430_TMUAki_TMT10x_P_F3 196.78 171.89 2741400 4415400 3432.3 6200400 3717300 3904100 2317500 3952800 4702500 3551900 4146300 2552500 4126700 237810 6165000 3528900 4120000 2497800 4004400 4659900 3485400 4017000 3 3 1 3 3 3 3 3 3 3 3 963770 1367200 3432.3 2033900 2653700 2751200 1522900 1410600 1625500 1256500 1429000 897390 1278300 106770 2038500 2516200 2728300 1607000 1497200 1642200 1233500 1384500 1 1 1 1 1 1 1 1 1 1 1 1777600 3048200 0 4166500 1063600 1153000 794650 2542200 3077000 2295300 2717400 1655100 2848400 131040 4126500 1012700 1391700 890760 2507200 3017600 2251900 2632500 2 2 0 2 2 2 2 2 2 2 2 181210000 115850000 65363000 4601 1061 4288 25606;25607 30738;30739;30740 30738 3 ENDYYTPTGEFRVDR Unmodified 1860.8279 0.82785588 1061 P46977;P46977-2 STT3A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A yes no 0 0 0 1 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 44.678 44.624 3 4.9132E-14 13772 20211116_3430_TMUAki_TMT10x_P_F3 141.57 115.85 6756400 11611000 106410 13661000 12660000 13592000 8521400 11433000 11037000 9653700 10695000 6291500 10842000 726080 13791000 12040000 13802000 8937900 11680000 11106000 9501600 10327000 6 6 4 6 6 6 6 6 6 6 6 4526600 7737500 72528 9199900 10497000 11766000 6925200 7556900 7201700 6199100 6989800 4215200 7225300 517830 9320500 9978600 11733000 7219800 7855100 7306900 6110300 6749400 4 4 3 4 4 4 4 4 4 4 4 2229800 3873500 33883 4461500 2163300 1826100 1596200 3876200 3835000 3454600 3704800 2076400 3616600 208250 4470500 2061600 2068900 1718100 3825000 3798900 3391300 3577900 2 2 1 2 2 2 2 2 2 2 2 965680000 648990000 316690000 4602 1061 4289 25608;25609;25610;25611;25612 30741;30742;30743;30744;30745;30746 30742 6 ENEFSFEDNAIR Unmodified 1469.6423 0.64228694 1735 Q14839;Q14839-2;Q8TDI0 CHD4;CHD5 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5 yes no 0 0 0 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 53.305 53.086 2 2.4709E-38 17345 20211116_3439_TMUAki_TMT10x_S_F1 278.51 217.68 17539000 29356000 0 31994000 18227000 22670000 16644000 21201000 21805000 21912000 24119000 16328000 27402000 1213600 32313000 17421000 23637000 17126000 21651000 22040000 21371000 23195000 6 6 0 6 6 6 6 6 6 6 6 5188500 8730400 0 9237600 8798500 11901000 6990400 6568500 6695400 6342700 6930100 4830000 8148300 355280 9427900 8382800 11839000 7176000 6940800 6832700 6203900 6678000 2 2 0 2 2 2 2 2 2 2 2 12350000 20625000 0 22756000 9428700 10769000 9654000 14632000 15110000 15570000 17189000 11498000 19254000 858320 22886000 9038200 11797000 9949600 14710000 15207000 15167000 16517000 4 4 0 4 4 4 4 4 4 4 4 2571500000 1420000000 1151500000 4603 1735 4290 25613;25614;25615;25616;25617 30747;30748;30749;30750;30751;30752 30749 6 ENENGEEEEEEAEFGEEDLFHQQGDPR Unmodified 3191.2712 0.27116824 1505 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 57.663 57.512 3 4.4142E-33 19115 20211116_3439_TMUAki_TMT10x_S_F1 165.48 159.93 4337900 7297500 6005.7 6180900 3978100 6364000 4630300 4200700 4578000 4425700 5040000 4038700 6805100 258670 6387100 3828700 6423300 4661000 4386900 4676000 4313100 4847600 4 4 1 4 4 4 4 4 4 4 4 2727600 4352600 0 3883300 2832400 4705500 3128300 2572400 2830700 2474100 2966900 2539400 4059700 189490 4007100 2720800 4695000 3148500 2720200 2897600 2420400 2857800 2 2 0 2 2 2 2 2 2 2 2 1610300 2944900 6005.7 2297600 1145700 1658500 1502000 1628300 1747300 1951700 2073100 1499300 2745500 69171 2380000 1107900 1728300 1512500 1666700 1778400 1892800 1989800 2 2 1 2 2 2 2 2 2 2 2 1530000000 929260000 600720000 4604 1505 4291 25618;25619 30753;30754;30755;30756 30755 4 ENFSCLTR Unmodified 1025.46 0.46002924 988 P40925;P40925-3;P40925-2 MDH1 Malate dehydrogenase, cytoplasmic yes no 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 38.104 38.048 2 0.0054088 9771 20211116_3442_TMUAki_TMT10x_S_F4 95.311 56.989 1474000 2306200 10171 2983900 1404200 1151000 1367000 2147200 2446300 1641900 2411500 1372400 2154500 118600 2968800 1345300 1308000 1422000 2117700 2440200 1624400 2327400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1474000 2306200 10171 2983900 1404200 1151000 1367000 2147200 2446300 1641900 2411500 1372400 2154500 118600 2968800 1345300 1308000 1422000 2117700 2440200 1624400 2327400 2 2 1 2 2 2 2 2 2 2 2 136370000 0 136370000 4605 988 4292 25620;25621 30757;30758 30758 2 ENGELLPILR Unmodified 1152.6503 0.65027285 376 O76003 GLRX3 Glutaredoxin-3 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 61.765 61.715 2 7.1764E-05 19650 20211116_3442_TMUAki_TMT10x_S_F4 128.52 89.744 17098000 27626000 53034 31966000 23451000 29594000 19842000 16154000 16806000 16686000 20795000 15920000 25794000 1514000 32269000 22396000 29993000 20221000 17118000 17372000 16274000 19936000 3 3 1 3 3 3 3 3 3 3 3 11669000 18452000 53034 20954000 18565000 24703000 15028000 10836000 11791000 11474000 13897000 10865000 17227000 1072200 21255000 17713000 24623000 15329000 11736000 12211000 11180000 13340000 2 2 1 2 2 2 2 2 2 2 2 5428700 9174000 0 11013000 4886100 4891000 4813300 5318100 5015300 5211600 6897900 5054600 8567200 441840 11013000 4683200 5369800 4892400 5382300 5160100 5094300 6595900 1 1 0 1 1 1 1 1 1 1 1 1252300000 677760000 574540000 4606 376 4293 25622;25623;25624;25625 30759;30760 30760 2 ENGVYLIDVK Unmodified 1148.6077 0.60773933 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS 4 0 1 1 59.271 59.401 2 0.00012322 18226 20211116_3431_TMUAki_TMT10x_P_F4 94.767 51.064 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4607 755 4294 25626 30761 30761 1 ENILEEFSK Unmodified 1107.5448 0.54480473 211 O43390;O43390-2;O43390-3;O43390-4 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 0 By MS/MS By MS/MS 3 1.22 1 4 3 2 2 6 6 66.996 66.871 2;3 0.00043012 21820 20211116_3442_TMUAki_TMT10x_S_F4 122.98 75.783 156180000 254910000 1850000 269630000 202700000 238220000 190170000 173460000 174260000 170290000 206440000 145430000 237920000 14866000 273550000 194120000 243160000 193060000 179540000 179120000 166450000 198150000 13 13 9 13 13 13 13 13 13 13 13 98029000 157120000 524920 167610000 137150000 186950000 126090000 105920000 108370000 106980000 128530000 91277000 146650000 8909200 170540000 131240000 187440000 127930000 111810000 111740000 104440000 123360000 8 8 6 8 8 8 8 8 8 8 8 58150000 97797000 1325100 102020000 65549000 51265000 64080000 67546000 65894000 63317000 77912000 54152000 91271000 5956500 103020000 62881000 55722000 65132000 67728000 67383000 62013000 74787000 5 5 3 5 5 5 5 5 5 5 5 7092400000 4082700000 3009700000 4608 211 4295 25627;25628;25629;25630;25631;25632;25633;25634;25635;25636;25637;25638 30762;30763;30764;30765;30766;30767;30768;30769;30770;30771;30772;30773;30774;30775;30776;30777;30778 30776 17 ENIVEAIIHSPELIR Unmodified 1731.9519 0.95193418 425 O95373 IPO7 Importin-7 yes yes 0 0 0 0 By MS/MS By MS/MS 4.4 1.02 1 2 1 1 2 3 77.689 77.659 3 5.2964E-24 25739 20211116_3431_TMUAki_TMT10x_P_F4 187.04 160.65 7006400 12150000 0 10631000 8675400 10150000 9547600 7834300 6874600 8215900 8704400 6523100 11331000 540200 10946000 8336100 10318000 9556200 8093700 7175700 8008400 8340200 3 3 0 3 3 3 3 3 3 3 3 1798700 3291300 0 3027100 2104200 3730900 2411700 1870500 1694300 2299300 2417900 1674700 3070100 147480 3117300 2024900 3715500 2408000 2008600 1780700 2228000 2310000 1 1 0 1 1 1 1 1 1 1 1 5207700 8858400 0 7604200 6571200 6419000 7135900 5963800 5180400 5916600 6286500 4848400 8261100 392710 7828400 6311200 6602200 7148200 6085200 5395000 5780400 6030100 2 2 0 2 2 2 2 2 2 2 2 3376700000 2101600000 1275000000 4609 425 4296 25639;25640;25641;25642;25643 30779;30780;30781;30782 30779 4 ENKITITNDK Unmodified 1174.6194 0.61936665 615 P11142;P54652 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 36.489 36.556 3 5.5307E-05 9354 20211116_3433_TMUAki_TMT10x_P_F5 122.45 97.23 5858300 7464100 19267 10521000 5003900 4316000 4599800 2103400 2404900 2174000 4721600 5454800 6976200 491680 10425000 4789000 4729900 4619000 2252400 2624800 2120300 4483000 2 2 2 2 2 2 2 2 2 2 2 3912100 4902300 5308.3 6924400 3152700 3305700 2694900 1448400 1696200 1454000 3034000 3642600 4581900 318650 6867000 3011800 3549100 2726600 1566600 1816700 1419800 2885300 1 1 1 1 1 1 1 1 1 1 1 1946200 2561800 13959 3597100 1851200 1010200 1904900 655020 708730 720000 1687600 1812200 2394300 173030 3557900 1777200 1180700 1892400 685850 808090 700510 1597700 1 1 1 1 1 1 1 1 1 1 1 230650000 132320000 98333000 4610 615 4297 25644;25645 30783;30784 30783 2 ENLATVEGNFASIDER Unmodified 1763.8326 0.83260691 1647 Q13561;Q13561-3;Q13561-2 DCTN2 Dynactin subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS 2.2 1.17 4 2 2 2 3 7 61.73 61.493 2;3 1.6842E-69 20755 20211116_3439_TMUAki_TMT10x_S_F1 310.9 268.9 29757000 51232000 49260 48206000 35564000 37590000 31488000 35218000 32616000 33854000 38518000 27706000 47793000 2443300 49233000 33991000 38896000 32188000 35886000 33341000 33120000 36974000 13 13 3 13 13 13 13 13 13 13 13 7051400 11636000 0 11248000 8742200 14464000 8929500 8182500 7793500 7758000 8668400 6565000 10857000 545430 11550000 8383000 14395000 9012600 8623700 8009300 7594300 8335100 3 3 0 3 3 3 3 3 3 3 3 22706000 39595000 49260 36958000 26822000 23126000 22559000 27036000 24822000 26096000 29850000 21141000 36937000 1897800 37683000 25608000 24501000 23175000 27263000 25332000 25526000 28639000 10 10 3 10 10 10 10 10 10 10 10 6711500000 2146800000 4564600000 4611 1647 4298 25646;25647;25648;25649;25650;25651;25652;25653;25654;25655 30785;30786;30787;30788;30789;30790;30791;30792;30793;30794;30795;30796;30797;30798;30799 30791 15 ENLDRDIALLK Unmodified 1298.7194 0.71941505 32 CON__P00735 yes yes 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 57.301 57.336 3 6.3402E-07 17859 20211116_3442_TMUAki_TMT10x_S_F4 134.56 82.315 + 9041300 13815000 0 17853000 16528000 17378000 12673000 17173000 22992000 18577000 17497000 8417700 12906000 771550 17921000 15746000 17728000 13376000 17513000 22744000 18085000 17049000 2 2 0 2 2 2 2 2 2 2 2 5052300 7223700 0 9803100 12794000 13928000 8995000 9132900 12107000 10196000 9515800 4703600 6750200 455770 9880300 12168000 13827000 9419000 9559500 12089000 9913700 9259800 1 1 0 1 1 1 1 1 1 1 1 3989000 6591400 0 8050000 3734000 3450200 3678300 8039900 10885000 8381500 7981300 3714100 6155900 315780 8040600 3578200 3901700 3957000 7953000 10655000 8171700 7789200 1 1 0 1 1 1 1 1 1 1 1 1070200000 524580000 545620000 4612 32 4299 25656;25657 30800;30801 30801 2 ENLLDFIK Unmodified 990.5386 0.53859714 533 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 1.12 2 2 2 2 4 4 76.759 76.774 2 0.0061691 24825 20211116_3445_TMUAki_TMT10x_S_F6 93.111 42.504 136080000 213460000 2060000 243280000 151440000 170680000 139400000 107170000 94405000 107910000 144650000 126720000 199290000 13068000 245000000 145010000 176930000 140640000 112190000 99793000 105360000 137990000 9 9 5 9 9 9 9 9 9 9 9 78357000 118590000 1954700 139060000 78240000 118160000 78501000 61928000 52936000 62290000 79345000 72972000 110730000 8249100 140100000 75141000 120400000 78822000 65813000 55909000 60820000 75723000 5 5 4 5 5 5 5 5 5 5 5 57724000 94872000 105220 104230000 73203000 52520000 60903000 45245000 41469000 45618000 65308000 53746000 88561000 4819000 104900000 69869000 56530000 61818000 46380000 43884000 44537000 62263000 4 4 1 4 4 4 4 4 4 4 4 5207500000 2601800000 2605700000 4613 533 4300 25658;25659;25660;25661;25662;25663;25664;25665 30802;30803;30804;30805;30806;30807;30808;30809 30808 8 ENLSAAFSR Unmodified 993.48796 0.48795855 681 P15170-3;P15170-2 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 0 0 0 0 By MS/MS 5 0 1 1 41.344 41.467 2 0.00018726 10097 20211116_3444_TMUAki_TMT10x_S_F5 99.34 75.368 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4614 681 4301 25666 30810 30810 1 ENLTDLVVDTDTLGESTQPQR Unmodified 2330.1238 0.12376313 1720 Q14676;Q14676-2;Q14676-3;Q14676-4 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 72.404 72.241 3 2.5802E-35 26163 20211116_3441_TMUAki_TMT10x_S_F3 192.98 168.19 10447000 19189000 21195 14791000 11140000 20964000 12213000 15175000 13915000 13155000 14035000 9727000 17889000 635150 15492000 10706000 20846000 12385000 15660000 14086000 12931000 13536000 6 6 2 6 6 6 6 6 6 6 6 6647700 12318000 0 9130900 5995800 16379000 7406600 9451200 8451800 8300700 8600800 6189200 11482000 293180 9648500 5780700 16083000 7471400 9924600 8557800 8154300 8292200 3 3 0 3 3 3 3 3 3 3 3 3799600 6871400 21195 5659800 5144700 4584500 4806100 5723600 5463400 4853800 5434700 3537900 6407200 341970 5843400 4925000 4762300 4913100 5735800 5528300 4776300 5243500 3 3 2 3 3 3 3 3 3 3 3 2299000000 1359600000 939390000 4615 1720 4302 25667;25668;25669;25670 30811;30812;30813;30814;30815;30816 30815 6 ENLVRPGIDHLGR Unmodified 1474.8005 0.80045934 3208 Q9UPN6;Q9UPN6-2 SCAF8 Protein SCAF8 yes no 0 0 0 1 By matching By MS/MS 5 0 2 1 1 35.24 35.309 4 3.6715E-05 7540 20211116_3444_TMUAki_TMT10x_S_F5 100.11 74.678 220520 352750 7509.1 388600 181340 190620 220490 264540 280960 236490 311000 205380 329290 24732 390950 175310 208070 223480 264390 284250 232120 299080 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 220520 352750 7509.1 388600 181340 190620 220490 264540 280960 236490 311000 205380 329290 24732 390950 175310 208070 223480 264390 284250 232120 299080 1 1 1 1 1 1 1 1 1 1 1 93799000 82018000 11781000 4616 3208 4303 25671;25672 30817 30817 1 ENLYPYLGPSTLR Unmodified 1521.7827 0.78274359 2934 Q9NRW7;Q9NRW7-2 VPS45 Vacuolar protein sorting-associated protein 45 yes no 0 0 0 0 By MS/MS 7 0 1 1 61.812 62.288 2 2.5393E-12 20833 20211116_3446_TMUAki_TMT10x_S_F7 134.49 71.831 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4617 2934 4304 25673 30818 30818 1 ENMAYTVECLR Oxidation (M) 1400.6064 0.60643548 774 P22695 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes yes 0 0 1 0 By MS/MS 3 0 1 1 37.682 37.708 2 0.0097942 10686 20211116_3430_TMUAki_TMT10x_P_F3 69.346 42.748 71036 111960 1524.9 169000 217070 199330 108800 92321 115660 86692 102710 66153 104690 9355.9 168840 205510 198790 116240 99098 116910 84900 99481 1 1 1 1 1 1 1 1 1 1 1 71036 111960 1524.9 169000 217070 199330 108800 92321 115660 86692 102710 66153 104690 9355.9 168840 205510 198790 116240 99098 116910 84900 99481 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7473600 7473600 0 4618 774 4305 25674 30819 30819 902 1 ENPGFDFSGAEISGNYTK Unmodified 1931.8537 0.85373628 2308 Q8WVJ2 NUDCD2 NudC domain-containing protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.25 0.829 1 1 2 2 2 64.635 64.713 3 1.6686E-23 20415 20211116_3431_TMUAki_TMT10x_P_F4 160.76 142.85 7461700 12659000 52233 12030000 8729400 9999600 8722200 9317000 8702600 9075900 10170000 6947800 11810000 659150 12286000 8371400 10297000 8847000 9500100 8906300 8873900 9765600 3 3 1 3 3 3 3 3 3 3 3 2306300 3932700 0 3400600 2623300 4593100 2820000 2930100 2538600 2723200 3122300 2147300 3667600 189420 3524600 2519900 4568200 2841500 3056900 2615600 2668200 2993900 1 1 0 1 1 1 1 1 1 1 1 5155500 8726000 52233 8629200 6106100 5406500 5902200 6386900 6164000 6352600 7048100 4800500 8142000 469730 8761900 5851600 5728600 6005600 6443200 6290700 6205700 6771700 2 2 1 2 2 2 2 2 2 2 2 1379700000 649410000 730260000 4619 2308 4306 25675;25676;25677;25678 30820;30821;30822;30823;30824 30820 5 ENPLLPEEEEQR Unmodified 1481.6998 0.69980182 1426 P78344;P78344-2 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 0 0 0 0 By MS/MS By MS/MS 1.2 0.4 4 1 2 3 43.968 43.887 2;3 1.3777E-38 11526 20211116_3428_TMUAki_TMT10x_P_F1 286.45 222.19 2936400 4460200 58467 6443200 4501400 4056200 2635700 4850600 5227800 4182100 4827900 2734500 4169300 319850 6397300 4272800 4297300 2851300 4871600 5190700 4112000 4669700 4 4 4 4 4 4 4 4 4 4 4 772500 999030 25444 1866000 2624200 2532700 1191400 1184600 1552100 1123100 1175300 719460 935450 113690 1852400 2481700 2508700 1294600 1270600 1549800 1099400 1145400 1 1 1 1 1 1 1 1 1 1 1 2163900 3461200 33023 4577100 1877200 1523500 1444300 3666000 3675700 3059100 3652600 2015000 3233800 206160 4544900 1791100 1788600 1556700 3601000 3640900 3012600 3524200 3 3 3 3 3 3 3 3 3 3 3 560680000 356070000 204610000 4620 1426 4307 25679;25680;25681;25682;25683 30825;30826;30827;30828 30825 4 ENPSATLEDLEKPGVDEEPQHVLLR Unmodified 2814.4036 0.4035668 2376 Q92900;Q92900-2 UPF1 Regulator of nonsense transcripts 1 yes no 0 0 0 1 By MS/MS By MS/MS 3.29 1.03 2 2 2 1 3 4 60.218 60.065 4 3.0806E-60 19022 20211116_3442_TMUAki_TMT10x_S_F4 227.44 215.67 31828000 50445000 462890 55520000 36517000 55743000 34655000 38863000 40184000 36688000 37342000 29637000 47090000 3039300 56285000 34989000 56394000 35421000 40300000 40537000 35921000 36111000 7 7 6 7 7 7 7 7 7 7 7 21614000 32920000 284590 36473000 25411000 45249000 24201000 25268000 27045000 23461000 23686000 20126000 30731000 2013900 37088000 24346000 45106000 24700000 26645000 27270000 22988000 22953000 4 4 3 4 4 4 4 4 4 4 4 10213000 17525000 178300 19047000 11106000 10494000 10454000 13595000 13139000 13227000 13656000 9511100 16359000 1025400 19196000 10643000 11288000 10721000 13655000 13268000 12934000 13158000 3 3 3 3 3 3 3 3 3 3 3 10692000000 5327700000 5364400000 4621 2376 4308 25684;25685;25686;25687;25688;25689;25690 30829;30830;30831;30832;30833;30834;30835 30835 7 ENPSEEAQNLVEFTDEEGYGR Unmodified 2412.0353 0.035342051 1572 Q12874 SF3A3 Splicing factor 3A subunit 3 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 69.444 69.274 3 8.5477E-45 23905 20211116_3439_TMUAki_TMT10x_S_F1 212.85 195.28 3226800 5937600 136400 5768100 4411700 4164900 4594800 5607300 4286400 4822400 5131800 3005400 5539800 390390 5872400 4241600 4374200 4641600 5604800 4404100 4742100 4924300 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3226800 5937600 136400 5768100 4411700 4164900 4594800 5607300 4286400 4822400 5131800 3005400 5539800 390390 5872400 4241600 4374200 4641600 5604800 4404100 4742100 4924300 3 3 2 3 3 3 3 3 3 3 3 770130000 0 770130000 4622 1572 4309 25691;25692 30836;30837;30838;30839 30837 4 ENQEPLRSPEVGDEEALRPLTK Unmodified 2506.2663 0.26634504 1080 P48681 NES Nestin yes yes 0 0 0 2 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 47.871 47.855 4 3.0075E-27 16217 20211116_3441_TMUAki_TMT10x_S_F3 178.11 159.71 20575000 37854000 258620 43532000 29518000 32827000 19250000 19151000 22650000 19939000 25229000 19159000 35343000 2009900 43848000 28057000 33795000 20169000 20185000 22985000 19441000 24258000 7 7 4 7 7 7 7 7 7 7 7 12186000 22281000 115070 25627000 24245000 27487000 15454000 11170000 13434000 11870000 14350000 11347000 20803000 1260200 25936000 23032000 27521000 16073000 12201000 13787000 11564000 13814000 4 4 2 4 4 4 4 4 4 4 4 8389100 15573000 143550 17904000 5272800 5339800 3796200 7980700 9216500 8068800 10880000 7811800 14540000 749730 17913000 5025000 6274200 4095700 7983600 9198000 7876700 10444000 3 3 2 3 3 3 3 3 3 3 3 2739000000 1760500000 978500000 4623 1080 4310 25693;25694;25695;25696 30840;30841;30842;30843;30844;30845;30846 30844 7 ENQLQLSCFINQEVK Unmodified 1848.904 0.90399771 1220 P54578;P54578-2;P54578-3 USP14 Ubiquitin carboxyl-terminal hydrolase 14 yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.745 1 2 3 4 2 70.757 70.741 2;3 1.62E-96 21975 20211116_3434_TMUAki_TMT10x_P_F6 337.53 303.65 35530000 57265000 1063800 60080000 37695000 49097000 40989000 28988000 28177000 32889000 40913000 33090000 53444000 3528100 60928000 36291000 50243000 41008000 30604000 29678000 31961000 39073000 7 7 6 7 7 7 7 7 7 7 7 20612000 33195000 699800 35259000 21338000 34533000 23436000 16389000 16635000 18889000 23661000 19197000 30982000 1931900 35813000 20555000 34817000 23452000 17654000 17470000 18345000 22607000 4 4 3 4 4 4 4 4 4 4 4 14918000 24070000 364010 24821000 16357000 14564000 17553000 12598000 11542000 14001000 17252000 13893000 22462000 1596200 25115000 15736000 15426000 17556000 12950000 12208000 13616000 16466000 3 3 3 3 3 3 3 3 3 3 3 2950600000 1606500000 1344100000 4624 1220 4311 25697;25698;25699;25700;25701;25702 30847;30848;30849;30850;30851;30852;30853;30854;30855 30852 9 ENQTAVDVFR Unmodified 1177.5728 0.57275081 1795 Q15382 RHEB GTP-binding protein Rheb yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 42.166 42.036 2 8.1636E-13 12624 20211116_3430_TMUAki_TMT10x_P_F3 218.6 142.87 1048900 1686000 0 2457700 2032500 1533000 1098200 1417100 1713100 1129500 1787400 976480 1576100 85323 2438900 1924400 1616200 1181800 1438000 1718600 1114900 1721900 2 2 0 2 2 2 2 2 2 2 2 376100 564080 0 766490 1448600 1018900 542680 427100 572260 358520 637780 350100 527100 35552 771420 1365500 1009100 598750 462060 583210 352980 613210 1 1 0 1 1 1 1 1 1 1 1 672780 1121900 0 1691200 583930 514090 555520 989980 1140900 770950 1149600 626380 1049000 49770 1667500 558880 607020 583090 975970 1135300 761970 1108700 1 1 0 1 1 1 1 1 1 1 1 98574000 61067000 37508000 4625 1795 4312 25703;25704 30856;30857 30856 2 ENQTAVDVFRR Unmodified 1333.6739 0.67386184 1795 Q15382 RHEB GTP-binding protein Rheb yes yes 0 0 0 1 By MS/MS By MS/MS 4.25 0.829 1 1 2 2 2 35.311 35.291 3 1.4952E-14 7492 20211116_3444_TMUAki_TMT10x_S_F5 185.37 130.95 2046600 3070400 26575 3744300 4862200 3601400 2352200 2410000 2712300 1944000 2863600 1905800 2867600 233880 3770100 4600600 3650900 2528300 2496500 2748900 1917800 2757800 4 4 4 4 4 4 4 4 4 4 4 1361300 2050100 20218 2491300 4217600 3025300 1727400 1606900 1816800 1271200 1869600 1267700 1914600 171710 2518400 3982700 3017200 1885100 1695300 1846200 1255400 1801900 2 2 2 2 2 2 2 2 2 2 2 685240 1020300 6357.3 1253000 644570 576080 624840 803120 895530 672790 993990 638070 952960 62166 1251700 617930 633720 643210 801200 902700 662450 955820 2 2 2 2 2 2 2 2 2 2 2 242610000 186960000 55650000 4626 1795 4313 25705;25706;25707;25708 30858;30859;30860;30861 30861 4 ENRESLVVNYEDLAAR Unmodified 1876.9279 0.92790427 1114 P49736 MCM2 DNA replication licensing factor MCM2 yes yes 0 0 0 1 By MS/MS By MS/MS 2.8 0.748 2 2 1 3 2 49.029 48.939 3 4.4472E-30 15170 20211116_3429_TMUAki_TMT10x_P_F2 172.37 151.51 23722000 34472000 539640 42321000 37048000 37519000 24967000 23076000 22284000 22646000 28992000 22092000 32196000 2191700 42548000 35250000 38194000 25874000 24178000 23025000 22135000 27760000 6 6 4 6 6 6 6 6 6 6 6 18417000 26172000 440460 33006000 31841000 33376000 20474000 17688000 17158000 17373000 22097000 17151000 24447000 1660800 33194000 30269000 33626000 21259000 18767000 17776000 16981000 21163000 4 4 2 4 4 4 4 4 4 4 4 5305300 8300400 99182 9314500 5207200 4143500 4493200 5388000 5125700 5272400 6894600 4940500 7748900 530910 9353300 4980900 4568100 4614500 5411800 5249600 5154000 6596300 2 2 2 2 2 2 2 2 2 2 2 1866000000 1211000000 655090000 4627 1114 4314 25709;25710;25711;25712;25713 30862;30863;30864;30865;30866;30867;30868 30862 7 ENSETVVTGSLDDLVK Unmodified 1704.8418 0.84177461 2758 Q9GZS3 WDR61 WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.756 2 3 2 4 3 66.651 66.396 2;3 2.2681E-52 22306 20211116_3429_TMUAki_TMT10x_P_F2 266.2 208.71 30346000 51077000 291580 45006000 40466000 42575000 33932000 36589000 33829000 34714000 39180000 28256000 47638000 2823400 46306000 38647000 43388000 34757000 37447000 34610000 33980000 37630000 7 7 4 7 7 7 7 7 7 7 7 10980000 17658000 218440 16640000 12248000 21732000 13267000 12117000 11046000 11491000 13570000 10225000 16473000 1123500 17124000 11782000 21609000 13335000 12787000 11424000 11249000 13012000 3 3 2 3 3 3 3 3 3 3 3 19366000 33420000 73139 28366000 28218000 20843000 20665000 24471000 22783000 23222000 25610000 18031000 31165000 1699900 29182000 26865000 21779000 21422000 24660000 23186000 22732000 24618000 4 4 2 4 4 4 4 4 4 4 4 2848200000 1396400000 1451800000 4628 2758 4315 25714;25715;25716;25717;25718;25719;25720 30869;30870;30871;30872;30873;30874;30875;30876 30871 8 ENSKREEEEQQEGGFASPR Unmodified 2205.9887 0.98866663 2565 Q96T88;Q96T88-2 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 0 0 0 2 By MS/MS 2 0 1 1 30.191 29.961 4 1.5301E-17 7537 20211116_3429_TMUAki_TMT10x_P_F2 151.96 133.33 92332 120310 0 162500 273570 205290 77701 163500 199680 194680 146620 85942 112420 6671.9 163440 257160 205550 92833 169280 195920 188850 143080 1 1 0 1 1 1 1 1 1 1 1 92332 120310 0 162500 273570 205290 77701 163500 199680 194680 146620 85942 112420 6671.9 163440 257160 205550 92833 169280 195920 188850 143080 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10210000 10210000 0 4629 2565 4316 25721 30877 30877 1 ENSVCSDTSESSAAEFDDRR Unmodified 2260.9138 0.91384671 383 O94763;O94763-2;O94763-3;O94763-4 URI1 Unconventional prefoldin RPB5 interactor 1 yes no 0 0 0 1 By MS/MS 1 0 1 1 33.367 33.367 3 7.6363E-09 7345 20211116_3428_TMUAki_TMT10x_P_F1 106.92 88.322 45627 65687 1923.1 86489 204040 124320 65793 56861 73585 42468 77784 42497 61370 7793.7 87329 192280 122800 74206 60786 74668 42069 74906 1 1 1 1 1 1 1 1 1 1 1 45627 65687 1923.1 86489 204040 124320 65793 56861 73585 42468 77784 42497 61370 7793.7 87329 192280 122800 74206 60786 74668 42069 74906 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11072000 11072000 0 4630 383 4317 25722 30878 30878 1 ENTEQRAEEIESR Unmodified 1589.7281 0.72814183 1598 Q13136;Q13136-2 PPFIA1 Liprin-alpha-1 yes no 0 0 0 1 By MS/MS 1 0 1 1 28.699 28.699 3 0.017515 5493 20211116_3428_TMUAki_TMT10x_P_F1 58.824 30.012 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4631 1598 4318 25723 30879 30879 1 ENVATTDTLESTTVGTSV Unmodified 1823.8636 0.86363226 1760 Q15046;Q15046-2 KARS Lysine--tRNA ligase yes no 0 0 0 0 By MS/MS By MS/MS 1.25 0.433 3 1 3 1 59.429 59.29 2;3 2.7033E-17 19397 20211116_3429_TMUAki_TMT10x_P_F2 153.63 138.09 4048600 6405100 7299.8 6618200 4978400 7892000 4782100 5308800 5350600 5282900 5636300 3769200 5977400 296930 6755700 4765200 7903200 4878600 5527200 5428600 5160700 5428200 4 4 1 4 4 4 4 4 4 4 4 3341900 5255000 7299.8 5594100 4332200 7282700 4261600 4325000 4321400 4294200 4655800 3111300 4904700 251110 5708200 4149500 7248500 4328300 4545700 4405600 4195200 4480900 3 3 1 3 3 3 3 3 3 3 3 706690 1150100 0 1024100 646190 609280 520490 983830 1029100 988710 980490 657900 1072700 45817 1047500 615660 654700 550280 981540 1023000 965420 947350 1 1 0 1 1 1 1 1 1 1 1 1532000000 1408900000 123070000 4632 1760 4319 25724;25725;25726;25727 30880;30881;30882;30883 30882 4 ENVLIGDGAGFK Unmodified 1218.6245 0.62445203 623 P11310;P11310-2 ACADM Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS 4 0 1 1 58.473 58.379 2 1.6008E-07 18291 20211116_3442_TMUAki_TMT10x_S_F4 112.51 66.51 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4633 623 4320 25728 30884 30884 1 ENVNATENCISAVGK Unmodified 1604.7464 0.74643444 84 O00410;O00410-2;O00410-3 IPO5 Importin-5 yes no 0 0 0 0 By MS/MS 3 0 1 1 43.716 43.754 3 6.3096E-05 13446 20211116_3430_TMUAki_TMT10x_P_F3 87.519 63.914 1175500 2071100 68972 2481900 4332700 3058300 1994700 1457900 1663800 1372500 1739700 1095000 1934100 205950 2511600 4099800 3044100 2135300 1560500 1709800 1344000 1675900 2 2 2 2 2 2 2 2 2 2 2 1175500 2071100 68972 2481900 4332700 3058300 1994700 1457900 1663800 1372500 1739700 1095000 1934100 205950 2511600 4099800 3044100 2135300 1560500 1709800 1344000 1675900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 104900000 104900000 0 4634 84 4321 25729 30885;30886 30885 2 ENVNSLLPVFEEFLK Unmodified 1776.9298 0.92980175 2350 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.73 1.86 2 1 2 2 2 1 1 5 6 81.978 81.976 3 1.4582E-05 26901 20211116_3445_TMUAki_TMT10x_S_F6 99.055 86.89 13326000 20433000 211360 22359000 15450000 16389000 15851000 9180000 9109300 10709000 14623000 12409000 19074000 1271500 22585000 14833000 16902000 15848000 9743200 9757800 10396000 13936000 10 10 5 10 10 10 10 10 10 10 10 6353400 9131800 144100 10589000 6587200 9587700 7133200 4267200 4283500 4662700 6786400 5916500 8526400 637750 10684000 6336900 9709500 7118800 4618900 4571200 4537600 6469100 4 4 2 4 4 4 4 4 4 4 4 6972300 11302000 67261 11770000 8862900 6801500 8717300 4912800 4825800 6046000 7836800 6492100 10547000 633730 11900000 8496400 7192900 8729500 5124200 5186500 5858200 7466600 6 6 3 6 6 6 6 6 6 6 6 1069000000 510730000 558310000 4635 2350 4322 25730;25731;25732;25733;25734;25735;25736;25737;25738;25739;25740 30887;30888;30889;30890;30891;30892;30893;30894;30895;30896;30897 30896 11 ENVYDELR Unmodified 1036.4825 0.48253882 260 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 0 0 0 0 By MS/MS 2 0 1 1 41.519 41.575 2 0.0023781 10795 20211116_3440_TMUAki_TMT10x_S_F2 103.55 82.246 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4636 260 4323 25741 30898 30898 1 ENVYDELRQCIR Unmodified 1593.7569 0.75693954 260 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 0 0 0 1 By matching By MS/MS 4.33 0.471 2 1 1 2 52.1 52.243 3 2.2778E-07 14450 20211116_3444_TMUAki_TMT10x_S_F5 129.77 78.637 4465800 7211700 16752 8116200 5257800 3475200 3264000 5388300 5312400 4736800 5961200 4158200 6732600 396950 8146600 4992300 3869600 3478400 5362400 5337800 4653000 5730500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4465800 7211700 16752 8116200 5257800 3475200 3264000 5388300 5312400 4736800 5961200 4158200 6732600 396950 8146600 4992300 3869600 3478400 5362400 5337800 4653000 5730500 2 2 2 2 2 2 2 2 2 2 2 736590000 249260000 487330000 4637 260 4324 25742;25743;25744 30899;30900 30900 2 EPAAEIEALLGMDLVR Oxidation (M) 1741.892 0.89203604 1561 Q12765;Q12765-2;Q12765-3 SCRN1 Secernin-1 yes no 0 0 1 0 By MS/MS By MS/MS 1.25 0.433 3 1 2 2 80.364 80.34 2;3 1.6883E-06 26441 20211116_3428_TMUAki_TMT10x_P_F1 101.42 88.794 4415700 7861700 33765 7082200 5303200 6232800 6046700 4249100 4473900 4999300 5818700 4111500 7332900 377970 7267400 5103600 6357400 6045900 4442800 4667900 4851700 5571500 3 3 1 3 3 3 3 3 3 3 3 855800 1423100 0 1250100 738430 1586000 955490 784580 832620 870550 927640 796670 1327300 48249 1292600 712130 1577000 954040 840720 855790 846680 891920 1 1 0 1 1 1 1 1 1 1 1 3559900 6438600 33765 5832100 4564700 4646800 5091200 3464500 3641300 4128800 4891100 3314800 6005600 329720 5974800 4391400 4780400 5091800 3602000 3812200 4005000 4679600 2 2 1 2 2 2 2 2 2 2 2 1132600000 568290000 564330000 4638 1561 4325 25745;25746;25747;25748 30901;30902;30903;30904 30901 2105 4 EPALGPHGPSR Unmodified 1116.5676 0.56760585 2163 Q8IY67-2 RAVER1 Ribonucleoprotein PTB-binding 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 28.882 28.728 3 0.037293 5799 20211116_3431_TMUAki_TMT10x_P_F4 44.426 23.524 1996500 3078300 90065 2313400 1979700 3113200 2001800 1618200 1588900 1727000 2181700 1859600 2869500 249230 2426100 1904300 3088600 2016500 1724000 1655500 1682200 2086200 3 3 3 3 3 3 3 3 3 3 3 1429300 2224200 80448 1658300 1388100 2433300 1401200 1207200 1198700 1333500 1599400 1331400 2073300 192890 1743300 1336200 2403500 1414400 1293100 1242600 1297200 1530500 2 2 2 2 2 2 2 2 2 2 2 567280 854110 9616.8 655160 591610 679910 600530 410990 390190 393420 582260 528260 796230 56334 682790 568070 685080 602160 430910 412970 384960 555740 1 1 1 1 1 1 1 1 1 1 1 19531000 16050000 3481200 4639 2163 4326 25749;25750;25751 30905;30906 30905 2 EPALNEANLSNLK Unmodified 1411.7307 0.73070802 1527 Q06323;Q06323-2;Q06323-3 PSME1 Proteasome activator complex subunit 1 yes no 0 0 0 0 By MS/MS 4 0 1 1 55.77 55.922 3 2.0955E-08 16797 20211116_3431_TMUAki_TMT10x_P_F4 109.44 89.336 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4640 1527 4327 25752 30907 30907 1 EPAPVPAAPASAPAAGPAVASGAGIAAPAGAPGVAPPRPGGR Unmodified 3575.8961 0.89609764 486 P04198 MYCN N-myc proto-oncogene protein yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 1 1 1 1 55.584 55.5 4 3.4666E-54 18368 20211116_3439_TMUAki_TMT10x_S_F1 186.31 172.58 1676900 3274900 41691 3047500 2175600 2931800 1858800 2816500 2643400 2549400 2656100 1561700 3055000 184870 3123300 2080600 2991300 1926300 2861400 2655300 2500900 2561900 3 3 3 3 3 3 3 3 3 3 3 781770 1379600 10882 1253500 1157400 2000900 1173000 1227300 1264000 1183500 1173700 727990 1286800 80216 1298800 1110800 1974900 1191800 1285600 1278800 1157700 1135000 1 1 1 1 1 1 1 1 1 1 1 895150 1895400 30809 1794000 1018200 930970 685870 1589200 1379300 1365900 1482400 833700 1768200 104650 1824400 969800 1016400 734550 1575900 1376500 1343200 1426900 2 2 2 2 2 2 2 2 2 2 2 762240000 415060000 347170000 4641 486 4328 25753;25754 30908;30909;30910 30909 3 EPFFHGHDNYDQLVR Unmodified 1872.8543 0.8543454 1419 P68400;P68400-2 CSNK2A1 Casein kinase II subunit alpha yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 45.481 45.635 4 8.5424E-24 12762 20211116_3433_TMUAki_TMT10x_P_F5 183.41 160.8 4467300 6942000 44529 7468700 5114200 4442900 4015900 5548700 5658300 5140300 6071700 4159500 6479600 388740 7536800 4876800 4737600 4181800 5573500 5699200 5037100 5844300 4 4 1 4 4 4 4 4 4 4 4 896040 1119200 0 1258100 1608500 1623800 809960 994690 1059400 858700 1111500 834120 1044800 61832 1279100 1520700 1617500 871060 1039000 1068700 844250 1070600 1 1 0 1 1 1 1 1 1 1 1 3571200 5822800 44529 6210600 3505800 2819100 3206000 4554000 4598900 4281600 4960200 3325400 5434800 326910 6257700 3356000 3120100 3310700 4534500 4630500 4192800 4773800 3 3 1 3 3 3 3 3 3 3 3 936720000 473460000 463250000 4642 1419 4329 25755;25756;25757 30911;30912;30913;30914 30911 4 EPFFHGQDNYDQLVR Unmodified 1863.854 0.85401105 736 P19784 CSNK2A2 Casein kinase II subunit alpha' yes yes 0 0 0 0 By MS/MS By MS/MS 3.8 0.748 2 2 1 3 2 53.715 53.687 3 6.6098E-24 15826 20211116_3431_TMUAki_TMT10x_P_F4 184 159.8 14376000 24805000 166680 22412000 24097000 35152000 20087000 28239000 21351000 22388000 20976000 13387000 23137000 1480000 23223000 23014000 34870000 20624000 28886000 21652000 22106000 20246000 7 7 6 7 7 7 7 7 7 7 7 12037000 20441000 88502 18396000 21317000 32223000 17674000 22587000 18307000 18542000 17876000 11208000 19066000 1207000 19118000 20353000 31757000 18138000 23330000 18581000 18276000 17258000 5 5 4 5 5 5 5 5 5 5 5 2339500 4364500 78182 4015800 2779900 2929400 2412400 5652000 3044200 3845600 3100200 2178900 4071200 272990 4105100 2661000 3112500 2485800 5555100 3071300 3830200 2988900 2 2 2 2 2 2 2 2 2 2 2 1975500000 1294600000 680850000 4643 736 4330 25758;25759;25760;25761;25762 30915;30916;30917;30918;30919;30920;30921 30917 7 EPFLQQLK Unmodified 1001.5546 0.55458155 3224 Q9Y262;Q9Y262-2 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 0 0 0 0 By MS/MS 6 0 1 1 58.155 58.215 2 0.039994 16814 20211116_3434_TMUAki_TMT10x_P_F6 65.156 30.348 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4644 3224 4331 25763 30922 30922 1 EPFTIAQGK Unmodified 989.5182 0.51819605 942 P35659 DEK Protein DEK yes yes 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 48.929 49.097 2 0.00022854 13197 20211116_3444_TMUAki_TMT10x_S_F5 97.431 65.496 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4645 942 4332 25764;25765 30923;30924 30923 2 EPGPLQCEAK Unmodified 1127.5281 0.5281088 125 O14686;O14686-3 KMT2D Histone-lysine N-methyltransferase 2D yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 51.159 50.928 2 0.083225 15981 20211116_3429_TMUAki_TMT10x_P_F2 57.598 18.58 1431800 2627600 10096 2919200 1220400 1099500 954600 2154400 2333900 2021700 2198300 1333200 2452900 125150 2930200 1164100 1256000 1024900 2133200 2309200 1980000 2124800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1431800 2627600 10096 2919200 1220400 1099500 954600 2154400 2333900 2021700 2198300 1333200 2452900 125150 2930200 1164100 1256000 1024900 2133200 2309200 1980000 2124800 1 1 1 1 1 1 1 1 1 1 1 285250000 110310000 174940000 4646 125 4333 25766;25767;25768 30925;30926 30925 2 EPGSGSGGGVYWVDSQQK Unmodified 1836.8279 0.82785588 2909 Q9NQT5-2;Q9NQT5 EXOSC3 Exosome complex component RRP40 yes no 0 0 0 0 By MS/MS By matching 6 0.816 1 1 1 2 1 56.156 56.422 3 0.11146 16022 20211116_3434_TMUAki_TMT10x_P_F6 16.306 2.0487 6863700 11905000 110220 12161000 12241000 17958000 10358000 10917000 9327400 9606100 10334000 6391600 11109000 747080 12475000 11697000 17778000 10573000 11416000 9569800 9435800 9937700 3 3 3 3 3 3 3 3 3 3 3 6863700 11905000 110220 12161000 12241000 17958000 10358000 10917000 9327400 9606100 10334000 6391600 11109000 747080 12475000 11697000 17778000 10573000 11416000 9569800 9435800 9937700 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2229600000 1606600000 622950000 4647 2909 4334 25769;25770;25771 30927 30927 1 EPLPPIQQHIWNMLNPPAEVTTK Oxidation (M) 2668.3683 0.36830769 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 1 0 By MS/MS By MS/MS 7.5 0.5 4 4 4 4 69.343 69.524 3;4 6.9228E-16 21982 20211116_3436_TMUAki_TMT10x_P_F8 136.64 121.38 73393000 126250000 906660 114730000 87230000 100510000 95066000 58560000 53522000 72174000 93295000 68341000 117760000 6414400 117650000 83875000 102330000 94734000 62064000 57678000 69928000 88767000 22 22 15 22 22 22 22 22 22 22 22 26068000 41941000 183650 39847000 27850000 48674000 32949000 19947000 18036000 25772000 31540000 24272000 39128000 1779900 40930000 26836000 48396000 32693000 21905000 19480000 24930000 30007000 8 8 4 8 8 8 8 8 8 8 8 47326000 84310000 723000 74887000 59379000 51839000 62117000 38613000 35486000 46403000 61756000 44069000 78635000 4634400 76718000 57040000 53934000 62040000 40159000 38199000 44998000 58760000 14 14 11 14 14 14 14 14 14 14 14 11870000000 6262400000 5607100000 4648 648 4335 25772;25773;25774;25775;25776;25777;25778;25779 30928;30929;30930;30931;30932;30933;30934;30935;30936;30937;30938;30939;30940;30941;30942;30943;30944;30945;30946;30947;30948;30949 30933 696 22 EPLPPIQQHIWNMLNPPAEVTTK Unmodified 2652.3734 0.37339307 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 5 3.46 3 4 3 4 77.585 77.557 3;4 3.0533E-15 27247 20211116_3439_TMUAki_TMT10x_S_F1 123.99 112.25 46525000 73524000 602060 72237000 52282000 49057000 57797000 26965000 25616000 29995000 51053000 43324000 68601000 4499000 73438000 50305000 50909000 57342000 28622000 28370000 29170000 48461000 9 9 9 9 9 9 9 9 9 9 9 20675000 28998000 292070 29959000 20949000 26734000 25147000 12049000 10825000 13142000 22164000 19253000 27062000 1990200 30447000 20210000 27103000 24845000 13024000 12042000 12790000 21030000 3 3 3 3 3 3 3 3 3 3 3 25850000 44525000 309990 42278000 31332000 22324000 32651000 14916000 14790000 16853000 28889000 24071000 41538000 2508800 42991000 30095000 23806000 32497000 15598000 16328000 16379000 27431000 6 6 6 6 6 6 6 6 6 6 6 6065700000 2794000000 3271700000 4649 648 4335 25780;25781;25782;25783;25784;25785;25786 30950;30951;30952;30953;30954;30955;30956;30957;30958 30955 9 EPLVATNLPGR Unmodified 1165.6455 0.64552182 1006 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 0 0 By MS/MS By matching 4.5 0.5 1 1 1 1 45.751 45.89 2 0.00025851 12746 20211116_3431_TMUAki_TMT10x_P_F4 96.009 76.232 1262600 2153000 52979 2581200 2787400 3382300 1795800 1940900 2306500 1672600 1888900 1176000 2010600 175410 2615000 2651000 3363800 1889200 2038100 2309300 1644600 1835100 1 1 1 1 1 1 1 1 1 1 1 1262600 2153000 52979 2581200 2787400 3382300 1795800 1940900 2306500 1672600 1888900 1176000 2010600 175410 2615000 2651000 3363800 1889200 2038100 2309300 1644600 1835100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 180750000 95244000 85511000 4650 1006 4336 25787;25788 30959 30959 1 EPLWIRPDAPSR Unmodified 1435.7572 0.75719754 598 P35520;P0DN79;P35520-2 CBS Cystathionine beta-synthase yes no 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 45.438 45.603 3 8.6437E-05 11633 20211116_3434_TMUAki_TMT10x_P_F6 86.592 57.795 4647200 7373100 0 9672600 4204200 3208600 3495800 4172100 3957200 3968400 5647500 4326600 6888500 324880 9608600 4009800 3689100 3597200 4187200 4065600 3884100 5395700 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4647200 7373100 0 9672600 4204200 3208600 3495800 4172100 3957200 3968400 5647500 4326600 6888500 324880 9608600 4009800 3689100 3597200 4187200 4065600 3884100 5395700 2 2 0 2 2 2 2 2 2 2 2 142800000 0 142800000 4651 598 4337 25789;25790 30960;30961;30962 30960 3 EPPPEFEFIADPPSISAFDLDVVK Unmodified 2658.3105 0.31050127 1810 Q15459 SF3A1 Splicing factor 3A subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.71 1.28 3 4 2 4 1 7 7 81.484 81.472 3;4 2.5744E-22 28336 20211116_3429_TMUAki_TMT10x_P_F2 141.1 129.36 10819000 17365000 81086 16751000 10664000 17535000 12165000 9827900 10380000 10889000 13584000 10074000 16201000 835900 17144000 10259000 17642000 12205000 10413000 10752000 10591000 13005000 11 11 4 11 11 11 11 11 11 11 11 7666700 12034000 68563 11585000 6802900 13634000 8187200 6931700 7259000 7666500 9403000 7138300 11227000 604130 11881000 6556500 13612000 8203500 7407900 7501500 7457300 9004300 7 7 3 7 7 7 7 7 7 7 7 3152800 5330600 12523 5166100 3861200 3900800 3977400 2896200 3121300 3222500 4181000 2935300 4973400 231770 5263000 3702700 4029400 4001800 3005100 3250400 3133800 4000500 4 4 1 4 4 4 4 4 4 4 4 4790200000 3089800000 1700400000 4652 1810 4338 25791;25792;25793;25794;25795;25796;25797;25798;25799;25800;25801;25802;25803;25804 30963;30964;30965;30966;30967;30968;30969;30970;30971;30972 30964 10 EPPQGAHFLSR Unmodified 1237.6204 0.62036971 464 P00374;P00374-2 DHFR Dihydrofolate reductase yes no 0 0 0 0 By MS/MS 5 0 1 1 31.417 31.559 3 0.05456 6174 20211116_3444_TMUAki_TMT10x_S_F5 46.481 17.738 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4653 464 4339 25805 30973 30973 1 EPPTDVTPTFLTTGVLSTLR Unmodified 2144.1365 0.13650007 1128 P49915;P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 0 0 By matching By MS/MS 7.33 0.471 2 1 1 2 79.101 79.15 2;3 8.9928E-05 27914 20211116_3446_TMUAki_TMT10x_S_F7 67.579 46.159 2405500 4801200 66384 4516200 3531000 3412000 3717800 2688200 2253000 2913400 3789300 2240200 4478900 277060 4610900 3394500 3527800 3716000 2776400 2410600 2836100 3607800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2405500 4801200 66384 4516200 3531000 3412000 3717800 2688200 2253000 2913400 3789300 2240200 4478900 277060 4610900 3394500 3527800 3716000 2776400 2410600 2836100 3607800 1 1 1 1 1 1 1 1 1 1 1 1528800000 695540000 833280000 4654 1128 4340 25806;25807;25808 30974;30975 30974 2 EPPYRVPR Unmodified 1012.5454 0.54541385 1026 P43243 MATR3 Matrin-3 yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 30.431 30.414 3 0.0032133 6855 20211116_3433_TMUAki_TMT10x_P_F5 93.429 57.887 369200 605620 14449 623870 700370 767940 460900 421420 428080 359790 469530 343870 565170 48713 637320 666400 765650 479020 444120 438410 353930 451650 1 1 1 1 1 1 1 1 1 1 1 369200 605620 14449 623870 700370 767940 460900 421420 428080 359790 469530 343870 565170 48713 637320 666400 765650 479020 444120 438410 353930 451650 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24127000 24127000 0 4655 1026 4341 25809;25810 30976 30976 1 EPQGALERPPVDHGLAR Unmodified 1840.9544 0.9543938 2492 Q96HY7 DHTKD1 Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 33.185 33.039 4 3.7353E-47 7596 20211116_3431_TMUAki_TMT10x_P_F4 246.12 225.09 777050 1245900 14300 1450400 1360800 1126300 861500 937900 1048400 821970 1202900 723610 1163300 85925 1460400 1293100 1163200 905750 959630 1063900 807550 1155600 3 3 3 3 3 3 3 3 3 3 3 380700 585280 10340 716180 973150 797900 471650 412800 467800 405350 561150 354550 546610 49497 722600 921120 799150 504510 438920 479390 396190 538430 1 1 1 1 1 1 1 1 1 1 1 396340 660640 3959.7 734220 387650 328430 389860 525100 580610 416620 641740 369060 616730 36428 737760 372000 364030 401240 520710 584490 411360 617170 2 2 2 2 2 2 2 2 2 2 2 164990000 142500000 22497000 4656 2492 4342 25811;25812;25813 30977;30978;30979 30977 3 EPSLRDSNPDEIEIDFETLKPTTLR Unmodified 2914.456 0.4559963 1766 Q15059 BRD3 Bromodomain-containing protein 3 yes yes 0 0 0 2 By MS/MS 3 0 1 1 72.861 72.548 4 6.1614E-23 26264 20211116_3441_TMUAki_TMT10x_S_F3 156.43 143.02 1580800 2896900 0 2490600 2043300 2179100 2077900 1689100 1453400 1733300 2083400 1471800 2701600 127630 2564900 1959500 2228100 2086500 1743400 1528300 1691000 1990300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1580800 2896900 0 2490600 2043300 2179100 2077900 1689100 1453400 1733300 2083400 1471800 2701600 127630 2564900 1959500 2228100 2086500 1743400 1528300 1691000 1990300 1 1 0 1 1 1 1 1 1 1 1 245050000 0 245050000 4657 1766 4343 25814 30980 30980 1 EPSPPIDEVINTPR Unmodified 1562.794 0.79403656 282 O60684 KPNA6 Importin subunit alpha-7 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 53.256 52.944 3 8.5362E-07 17271 20211116_3430_TMUAki_TMT10x_P_F3 97.866 65.207 3638600 5780700 42534 6754100 4897500 4802000 3791600 3720000 3442400 3381600 4870300 3388200 5397600 358940 6792300 4670700 4988100 3893000 3826700 3568000 3316500 4654000 2 2 2 2 2 2 2 2 2 2 2 1484200 2221800 24981 2415300 2699600 2947400 1961600 1512000 1443700 1297200 1914600 1382200 2073900 163360 2458300 2571400 2937500 2012300 1603300 1508100 1275800 1832400 1 1 1 1 1 1 1 1 1 1 1 2154400 3558900 17553 4338800 2197900 1854700 1830000 2208000 1998700 2084400 2955600 2006000 3323700 195580 4334000 2099200 2050600 1880700 2223400 2059900 2040800 2821600 1 1 1 1 1 1 1 1 1 1 1 470640000 170850000 299790000 4658 282 4344 25815;25816;25817 30981;30982;30983 30982 3 EPVICTPVSSGFEK Unmodified 1548.7494 0.74939455 2287 Q8TEQ6 GEMIN5 Gem-associated protein 5 yes yes 0 0 0 0 By MS/MS 5 0 1 1 57.702 57.89 3 0.0085132 17896 20211116_3433_TMUAki_TMT10x_P_F5 56.599 41.909 2755800 4469100 533.22 4626200 4254900 6211200 3636400 3567300 3264800 3435700 3520200 2565900 4170800 249970 4732100 4064300 6170400 3709400 3756500 3346700 3360900 3387900 1 1 1 1 1 1 1 1 1 1 1 2755800 4469100 533.22 4626200 4254900 6211200 3636400 3567300 3264800 3435700 3520200 2565900 4170800 249970 4732100 4064300 6170400 3709400 3756500 3346700 3360900 3387900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 205770000 205770000 0 4659 2287 4345 25818 30984 30984 1 EQADFALEALAK Unmodified 1304.6612 0.66123147 2078 Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-5;Q7Z406-4 MYH14 Myosin-14 yes no 0 0 0 0 By MS/MS By MS/MS 3.13 0.884 4 6 4 1 10 5 58.272 58.134 2;3 8.0142E-12 21917 20211116_3440_TMUAki_TMT10x_S_F2 136.27 0 24850000 40445000 313970 41700000 29514000 40224000 28821000 23000000 21539000 24548000 29685000 23140000 37744000 2375600 42430000 28298000 40682000 29046000 24301000 22520000 23911000 28384000 11 11 7 11 11 11 11 11 11 11 11 18445000 29034000 163720 30139000 22284000 34243000 21736000 16735000 15716000 17906000 21389000 17175000 27096000 1692900 30730000 21360000 34238000 21890000 17933000 16453000 17440000 20458000 9 9 5 9 9 9 9 9 9 9 9 6405100 11410000 150250 11561000 7230100 5980900 7085700 6265700 5823500 6641900 8296200 5964900 10648000 682610 11700000 6938000 6443500 7155800 6367400 6067400 6471300 7926500 2 2 2 2 2 2 2 2 2 2 2 3503100000 2517300000 985830000 4660 2078 4346 25819;25820;25821;25822;25823;25824;25825;25826;25827;25828;25829;25830;25831;25832;25833 30985;30986;30987;30988;30989;30990;30991;30992;30993;30994;30995;30996;30997;30998 30995 14 EQADFAVEALAK Unmodified 1290.6456 0.6455814 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 no no 0 0 0 0 By MS/MS By MS/MS 3.25 0.829 1 1 2 3 1 63.123 62.835 2;3 1.609E-07 19651 20211116_3431_TMUAki_TMT10x_P_F4 112.44 74.081 4085700 5824600 44081 6816200 4845400 7434700 4866800 3512400 3083400 3789600 4683600 3804500 5438700 390450 6892800 4649200 7447700 4880300 3777400 3271700 3689700 4468600 1 1 1 1 1 1 1 1 1 1 1 4085700 5824600 44081 6816200 4845400 7434700 4866800 3512400 3083400 3789600 4683600 3804500 5438700 390450 6892800 4649200 7447700 4880300 3777400 3271700 3689700 4468600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 336410000 336410000 0 4661 935 4347 25834;25835;25836;25837 30999;31000;31001;31002 31001 4 EQAEAEVASLNR Unmodified 1315.6368 0.63680763 526;527 P06753-2;P06753-3;P06753-5;P06753-4;P06753-6 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 0 By MS/MS 1.33 0.471 2 1 3 38.801 38.757 2;3 7.4408E-24 11564 20211116_3439_TMUAki_TMT10x_S_F1 241.35 21.999 1366300 2329000 8165.9 2578700 1259900 1097700 1330200 1486000 1618400 1311400 1912600 1272200 2174100 117780 2590900 1210200 1218300 1354500 1486000 1644300 1288000 1835900 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1366300 2329000 8165.9 2578700 1259900 1097700 1330200 1486000 1618400 1311400 1912600 1272200 2174100 117780 2590900 1210200 1218300 1354500 1486000 1644300 1288000 1835900 3 3 2 3 3 3 3 3 3 3 3 128400000 0 128400000 4662 526;527 4348 25838;25839;25840 31003;31004;31005 31004 3 EQAEAEVASLNRR Unmodified 1471.7379 0.73791866 526;527 P06753-2;P06753-3;P06753-5;P06753-4;P06753-6 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 1 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 34.544 34.39 3 2.0885E-23 7730 20211116_3428_TMUAki_TMT10x_P_F1 216.15 12.015 2227200 3540300 14602 4518200 5856600 4086700 2700600 2656300 3182100 2244900 3401200 2073800 3307200 244560 4533800 5536900 4157700 2919300 2760600 3223900 2209400 3274300 3 3 1 3 3 3 3 3 3 3 3 1435700 2219100 14602 2993100 5054800 3387400 1835500 1797300 2133000 1434200 2218800 1336900 2073500 182290 3004700 4766600 3390800 2039400 1896800 2160000 1415700 2137800 2 2 1 2 2 2 2 2 2 2 2 791510 1321200 0 1525100 801840 699300 865080 858960 1049000 810630 1182400 736940 1233600 62270 1529100 770200 766930 879870 863830 1063900 793690 1136500 1 1 0 1 1 1 1 1 1 1 1 728420000 566320000 162100000 4663 526;527 4349 25841;25842;25843 31006;31007;31008 31006 3 EQAEEERYFR Unmodified 1355.6106 0.61059288 3136 Q9UII2;Q9UII2-3;Q9UII2-2 ATPIF1 ATPase inhibitor, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 32.724 32.616 3 3.0054E-07 7011 20211116_3428_TMUAki_TMT10x_P_F1 158.3 131.05 1140200 1619700 0 2369900 3741100 2172700 1318200 1787700 2333900 1206800 1884300 1061500 1514100 113110 2361700 3525100 2217000 1495300 1819700 2313900 1202500 1831600 3 3 0 3 3 3 3 3 3 3 3 839760 1154200 0 1690300 3358600 1964200 1060900 1281300 1666200 896540 1361000 781770 1079000 89876 1690700 3161600 1968800 1215000 1325700 1657800 891460 1322400 2 2 0 2 2 2 2 2 2 2 2 300430 465440 0 679510 382540 208550 257310 506380 667660 310230 523290 279710 435110 23235 671050 363460 248200 280250 493950 656150 311070 509270 1 1 0 1 1 1 1 1 1 1 1 149310000 110390000 38927000 4664 3136 4350 25844;25845;25846;25847 31009;31010;31011 31009 3 EQAELTGLR Unmodified 1015.5298 0.52982336 2489 Q96HS1;Q96HS1-2 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 36.021 36.12 2 9.8401E-05 8560 20211116_3440_TMUAki_TMT10x_S_F2 140.17 77.705 216550 375280 3912.8 411800 230110 187770 209420 209040 234500 199050 302180 201660 350310 21790 414180 220360 205590 214280 211170 239870 194810 289410 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 216550 375280 3912.8 411800 230110 187770 209420 209040 234500 199050 302180 201660 350310 21790 414180 220360 205590 214280 211170 239870 194810 289410 1 1 1 1 1 1 1 1 1 1 1 13224000 0 13224000 4665 2489 4351 25848;25849 31012;31013 31013 2 EQANAVSEAVVSSVNTVATK Unmodified 2003.0171 0.017113212 379 O76070 SNCG Gamma-synuclein yes yes 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 68.823 68.767 3 3.2984E-07 21118 20211116_3434_TMUAki_TMT10x_P_F6 97.69 79.094 10348000 17750000 283430 17239000 12464000 18703000 13382000 10291000 9670000 11013000 13072000 9637200 16560000 1151700 17644000 11991000 18774000 13411000 10909000 10121000 10726000 12505000 4 4 4 4 4 4 4 4 4 4 4 7747900 13025000 232450 12529000 9208700 15866000 10353000 7491300 7078200 8118300 9678800 7215800 12152000 879450 12866000 8872600 15769000 10340000 8058000 7436400 7902900 9256300 3 3 3 3 3 3 3 3 3 3 3 2600200 4724400 50979 4710300 3255200 2837200 3029000 2799400 2591900 2894800 3393100 2421400 4408300 272260 4778300 3118600 3005000 3070800 2851000 2684300 2823300 3248400 1 1 1 1 1 1 1 1 1 1 1 876190000 506950000 369230000 4666 379 4352 25850;25851;25852 31014;31015;31016;31017;31018 31014 5 EQCCYNCGKPGHLAR Unmodified 1848.7818 0.78179086 1361 P62633;P62633-2;P62633-4;P62633-8;P62633-5;P62633-6;P62633-7;P62633-3 CNBP Cellular nucleic acid-binding protein yes no 0 0 0 1 By MS/MS 5 0 1 1 29.27 29.2 4 8.8264E-07 6389 20211116_3433_TMUAki_TMT10x_P_F5 115.09 98.153 77414 130520 4880.9 191570 391360 143250 96538 69697 67624 55509 124260 72117 122020 15364 190390 368140 147260 112440 74151 72071 54798 118120 1 1 1 1 1 1 1 1 1 1 1 77414 130520 4880.9 191570 391360 143250 96538 69697 67624 55509 124260 72117 122020 15364 190390 368140 147260 112440 74151 72071 54798 118120 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10463000 10463000 0 4667 1361 4353 25853 31019 31019 1 EQDQRPLHPVANPHAEISTK Unmodified 2266.1454 0.14544204 3002 Q9NX58 LYAR Cell growth-regulating nucleolar protein yes yes 0 0 0 1 By MS/MS 4.5 0.5 2 2 4 31.088 31.073 4;5 5.6943E-18 7084 20211116_3433_TMUAki_TMT10x_P_F5 145.04 128.55 969980 1392900 19826 1759200 2371800 1548900 987110 676100 858980 699300 1160300 903280 1301100 116280 1765700 2240500 1571300 1069700 732160 890160 682020 1110000 3 3 2 3 3 3 3 3 3 3 3 969980 1392900 19826 1759200 2371800 1548900 987110 676100 858980 699300 1160300 903280 1301100 116280 1765700 2240500 1571300 1069700 732160 890160 682020 1110000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 291960000 291960000 0 4668 3002 4354 25854;25855;25856;25857 31020;31021;31022 31021 3 EQDYLCHVYVR Unmodified 1480.6769 0.67689831 192 O15498;O15498-2 YKT6 Synaptobrevin homolog YKT6 yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 40.75 40.804 3 0.00023848 12219 20211116_3430_TMUAki_TMT10x_P_F3 85.554 68.529 292140 415000 0 499900 628810 604080 375530 259530 301340 289490 371010 271980 387550 25573 505540 596350 601230 391870 282160 312290 281500 355740 1 1 0 1 1 1 1 1 1 1 1 292140 415000 0 499900 628810 604080 375530 259530 301340 289490 371010 271980 387550 25573 505540 596350 601230 391870 282160 312290 281500 355740 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 45201000 45201000 0 4669 192 4355 25858;25859;25860 31023;31024;31025 31023 3 EQEAGLLQFLR Unmodified 1302.6932 0.6932003 3035 Q9NZL4;Q9NZL4-3 HSPBP1 Hsp70-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 72.298 72.269 2 8.1789E-05 23747 20211116_3433_TMUAki_TMT10x_P_F5 98.634 60.473 16562000 26781000 23424 25148000 17451000 26643000 18282000 16343000 13318000 16012000 19945000 15419000 24983000 1184900 25793000 16741000 26818000 18347000 17127000 14001000 15652000 19035000 4 4 1 4 4 4 4 4 4 4 4 11698000 18922000 23424 17207000 11885000 21548000 13438000 11587000 9066200 11175000 14166000 10891000 17650000 841390 17740000 11426000 21460000 13414000 12271000 9595600 10931000 13508000 3 3 1 3 3 3 3 3 3 3 3 4863700 7858600 0 7941200 5566500 5094800 4844400 4756700 4252100 4837100 5778400 4528000 7333200 343500 8052900 5314800 5358200 4933300 4855800 4405900 4720800 5526900 1 1 0 1 1 1 1 1 1 1 1 1038900000 432440000 606510000 4670 3035 4356 25861;25862;25863;25864 31026;31027;31028;31029;31030 31029 5 EQEAREPVLAQLR Unmodified 1537.8213 0.82125436 1995 Q6P2E9;Q6P2E9-2 EDC4 Enhancer of mRNA-decapping protein 4 yes no 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 37.906 37.657 3 9.0336E-07 12026 20211116_3441_TMUAki_TMT10x_S_F3 118.52 85.331 1069700 1737700 21313 1952400 2023000 1859100 1344700 1814900 1902400 1488000 1924400 996120 1622200 121900 1975200 1924000 1898700 1416700 1837700 1911700 1466700 1855700 2 2 2 2 2 2 2 2 2 2 2 537530 855860 965.85 1061800 1530400 1415900 893270 946280 982520 790460 1020600 500500 799380 59371 1074000 1451500 1410000 942160 981140 996990 778420 983360 1 1 1 1 1 1 1 1 1 1 1 532140 881820 20347 890590 492590 443230 451380 868670 919870 697500 903750 495620 822860 62527 901240 472510 488690 474520 856600 914730 688270 872320 1 1 1 1 1 1 1 1 1 1 1 64692000 46236000 18455000 4671 1995 4357 25865;25866;25867 31031;31032;31033 31033 3 EQEELEEALEVERQENEQR Unmodified 2386.0884 0.088440254 1166 P51948;P51948-2 MNAT1 CDK-activating kinase assembly factor MAT1 yes no 0 0 0 1 By MS/MS 1 0 1 1 55.861 55.56 3 2.2684E-59 18358 20211116_3439_TMUAki_TMT10x_S_F1 256.92 236.48 890200 1738800 13018 1674900 997430 984770 863640 1440800 1368000 1353200 1419100 828960 1622300 87438 1702900 953810 1056000 898640 1439300 1371500 1325200 1367300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 890200 1738800 13018 1674900 997430 984770 863640 1440800 1368000 1353200 1419100 828960 1622300 87438 1702900 953810 1056000 898640 1439300 1371500 1325200 1367300 1 1 1 1 1 1 1 1 1 1 1 158160000 0 158160000 4672 1166 4358 25868 31034 31034 1 EQEPMPTVDSHEPR Oxidation (M) 1666.7257 0.72569899 2834 Q9H910;Q9H910-3;Q9H910-2 HN1L Hematological and neurological expressed 1-like protein yes no 0 0 1 0 By MS/MS By MS/MS 1.2 0.4 4 1 3 2 27.465 27.454 3 1.4176E-05 6840 20211116_3429_TMUAki_TMT10x_P_F2 100.56 84.209 204780 403160 746.97 345600 355050 304520 257380 181090 232530 203000 320360 190670 375970 11178 356020 337950 309980 265410 191000 240760 197360 306320 7 7 1 7 7 7 7 7 7 7 7 85929 157480 746.97 136580 207290 172160 117530 75675 108470 91648 136310 80012 146860 6898.7 141340 196530 171020 123630 82288 111730 88850 130630 3 3 1 3 3 3 3 3 3 3 3 118850 245680 0 209020 147760 132360 139850 105410 124060 111350 184040 110650 229110 4279.8 214680 141420 138960 141780 108720 129030 108510 175680 4 4 0 4 4 4 4 4 4 4 4 40127000 24118000 16009000 4673 2834 4359 25869;25870;25871;25872;25873 31035;31036;31037;31038;31039;31040;31041 31037 2969 7 EQEPMPTVDSHEPR Unmodified 1650.7308 0.73078437 2834 Q9H910;Q9H910-3;Q9H910-2 HN1L Hematological and neurological expressed 1-like protein yes no 0 0 0 0 By MS/MS By matching 1.33 0.471 2 1 2 1 31.991 31.926 3 2.2943E-09 8308 20211116_3429_TMUAki_TMT10x_P_F2 127.57 109.5 221000 328590 0 403070 591810 432900 282290 229770 225290 195170 338220 205710 306890 15569 406380 559160 434600 300760 242830 235700 192040 322770 2 2 0 2 2 2 2 2 2 2 2 221000 328590 0 403070 591810 432900 282290 229770 225290 195170 338220 205710 306890 15569 406380 559160 434600 300760 242830 235700 192040 322770 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 61132000 55158000 5973600 4674 2834 4359 25874;25875;25876 31042;31043 31043 2 EQFGNNPFSSLAGNSDSSSSQPLR Unmodified 2525.1419 0.14187281 2932 Q9NRR5 UBQLN4 Ubiquilin-4 yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 64.602 64.583 3 1.1052E-17 19450 20211116_3434_TMUAki_TMT10x_P_F6 139.45 131.49 7118400 12404000 157690 11458000 7498900 10141000 7845000 7438300 7118400 7695100 9241800 6629100 11571000 742450 11736000 7208500 10351000 7916900 7706800 7348900 7504800 8849500 4 4 4 4 4 4 4 4 4 4 4 2974300 4921200 74645 4699300 2975200 5627100 3487400 3016300 2979400 3277600 3823500 2770000 4591200 316170 4823600 2870100 5616600 3494900 3206300 3083200 3190300 3662300 2 2 2 2 2 2 2 2 2 2 2 4144100 7483300 83042 6758900 4523700 4513700 4357600 4422000 4139000 4417400 5418300 3859100 6980000 426280 6912800 4338400 4734700 4422000 4500400 4265600 4314500 5187200 2 2 2 2 2 2 2 2 2 2 2 1128900000 573960000 554910000 4675 2932 4360 25877;25878 31044;31045;31046;31047 31045 4 EQFLDGDGWTSR Unmodified 1409.6212 0.62115757 832 P27797 CALR Calreticulin yes yes 0 0 0 0 By MS/MS By MS/MS 2.83 1.07 1 1 2 2 3 3 56.806 56.653 2 2.6401E-38 19817 20211116_3441_TMUAki_TMT10x_S_F3 277.28 242.75 25246000 43557000 25329 54457000 39542000 31006000 32099000 15009000 15757000 17305000 32298000 23505000 40684000 2088500 54435000 37714000 32674000 32443000 16136000 17332000 16806000 30645000 7 7 2 7 7 7 7 7 7 7 7 12110000 20234000 25329 25418000 28618000 23582000 23055000 7554500 7667100 8668100 15483000 11276000 18900000 1223200 25537000 27300000 23777000 23200000 8523100 8750600 8419800 14693000 4 4 2 4 4 4 4 4 4 4 4 13136000 23323000 0 29039000 10923000 7424100 9044600 7454500 8090100 8636900 16816000 12229000 21784000 865290 28898000 10414000 8897100 9243000 7613100 8581700 8386600 15951000 3 3 0 3 3 3 3 3 3 3 3 2907500000 1927400000 980150000 4676 832 4361 25879;25880;25881;25882;25883;25884 31048;31049;31050;31051;31052;31053;31054;31055 31053 8 EQFNEFR Unmodified 968.43519 0.4351947 1787 Q15293;Q15293-2 RCN1 Reticulocalbin-1 yes no 0 0 0 0 By MS/MS 3 0 1 1 37.416 37.442 2 0.044911 10742 20211116_3430_TMUAki_TMT10x_P_F3 71.877 38.139 85353 149000 920.45 190430 395150 245050 134230 111110 149640 102890 144020 79479 139180 12273 192160 372380 243260 150280 119480 151360 100820 139110 1 1 1 1 1 1 1 1 1 1 1 85353 149000 920.45 190430 395150 245050 134230 111110 149640 102890 144020 79479 139180 12273 192160 372380 243260 150280 119480 151360 100820 139110 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13585000 13585000 0 4677 1787 4362 25885 31056 31056 1 EQFVEFR Unmodified 953.46068 0.46068117 252 O43852;O43852-3;O43852-4;O43852-2;O43852-15 CALU Calumenin yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 46.794 46.734 2 0.0020612 15788 20211116_3441_TMUAki_TMT10x_S_F3 130.28 56.088 20124000 31222000 120550 38035000 36333000 32664000 20423000 33807000 36385000 28950000 32476000 18738000 29159000 1909200 38241000 34438000 33633000 22042000 34170000 36178000 28474000 31450000 7 7 3 7 7 7 7 7 7 7 7 8843400 12477000 0 16117000 26132000 22255000 11561000 13781000 15458000 11593000 13722000 8233500 11656000 902420 16277000 24686000 22103000 12610000 14373000 15494000 11412000 13291000 3 3 0 3 3 3 3 3 3 3 3 11281000 18745000 120550 21918000 10200000 10409000 8861400 20027000 20927000 17357000 18755000 10504000 17503000 1006700 21964000 9752600 11530000 9432000 19796000 20684000 17062000 18159000 4 4 3 4 4 4 4 4 4 4 4 1614700000 1160500000 454170000 4678 252 4363 25886;25887;25888;25889;25890;25891 31057;31058;31059;31060;31061;31062;31063 31061 7 EQFVEFRDK Unmodified 1196.5826 0.58258722 252 O43852;O43852-3;O43852-4;O43852-2;O43852-15 CALU Calumenin yes no 0 0 0 1 By MS/MS By MS/MS 4 0.816 1 1 1 1 2 43.199 43.33 3 0.07066 12097 20211116_3442_TMUAki_TMT10x_S_F4 41.48 16.263 1864400 2918100 13239 3446800 3065300 2355000 1856000 2592600 2912900 2191500 2800400 1735900 2724900 171260 3462600 2908700 2471800 1978600 2612000 2913100 2156800 2704900 2 2 1 2 2 2 2 2 2 2 2 529230 802120 13239 940820 1346900 1202700 648850 659550 723020 542700 704320 492870 748980 67667 953910 1274700 1196800 696950 694500 731640 534840 680010 1 1 1 1 1 1 1 1 1 1 1 1335100 2116000 0 2505900 1718400 1152300 1207200 1933100 2189800 1648800 2096100 1243000 1975900 103600 2508700 1634000 1274900 1281600 1917500 2181500 1622000 2024900 1 1 0 1 1 1 1 1 1 1 1 161140000 21119000 140020000 4679 252 4364 25892;25893;25894 31064 31064 1 EQGPYETYEGSPVSK Unmodified 1669.7471 0.74714594 791 P23921 RRM1 Ribonucleoside-diphosphate reductase large subunit yes yes 0 0 0 0 By MS/MS By MS/MS 3.6 0.49 2 3 2 3 44.416 44.42 3 2.6227E-19 13675 20211116_3430_TMUAki_TMT10x_P_F3 160.63 142.03 8845700 13305000 44318 18559000 23110000 21517000 12990000 11593000 12716000 9212000 12185000 8235700 12434000 868940 18606000 21900000 21514000 13697000 12217000 12930000 9095000 11770000 6 6 3 6 6 6 6 6 6 6 6 8115200 12142000 44318 16647000 22572000 21039000 12427000 10721000 11707000 8476400 11118000 7555600 11347000 812930 16730000 21384000 20930000 13113000 11354000 11920000 8371000 10744000 5 5 3 5 5 5 5 5 5 5 5 730430 1162200 0 1911900 537540 478130 563510 872510 1009100 735580 1066100 680090 1087300 56014 1876100 515950 584390 584030 863100 1009100 724050 1026700 1 1 0 1 1 1 1 1 1 1 1 772700000 550190000 222510000 4680 791 4365 25895;25896;25897;25898;25899 31065;31066;31067;31068;31069;31070;31071 31066 7 EQGVEEHETLLLR Unmodified 1551.7893 0.78928553 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS 1.5 0.5 1 1 2 40.291 40.152 3 1.4327E-08 10162 20211116_3440_TMUAki_TMT10x_S_F2 114.69 98.125 484750 757150 0 957310 386620 321220 350200 584620 593490 503960 663520 451300 707250 33433 952970 369440 372400 364660 578700 595610 495520 637900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 484750 757150 0 957310 386620 321220 350200 584620 593490 503960 663520 451300 707250 33433 952970 369440 372400 364660 578700 595610 495520 637900 1 1 0 1 1 1 1 1 1 1 1 12936000 0 12936000 4681 3293 4366 25900;25901 31072;31073 31073 2 EQGVLSFWR Unmodified 1120.5665 0.56654322 639;502 P05141;P12236 SLC25A5;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 64.653 64.951 2 6.1145E-06 21371 20211116_3435_TMUAki_TMT10x_P_F7 162.64 107.27 37866000 61400000 293610 64470000 46021000 52523000 47749000 27572000 22084000 29439000 42632000 35258000 57305000 3438200 65374000 44182000 53683000 47549000 29348000 24319000 28674000 40489000 5 5 3 5 5 5 5 5 5 5 5 24069000 38185000 160790 39591000 33610000 41575000 32951000 18213000 14670000 19389000 26772000 22411000 35636000 2194700 40319000 32214000 41707000 32892000 19732000 16154000 18888000 25451000 3 3 2 3 3 3 3 3 3 3 3 13797000 23215000 132830 24879000 12411000 10948000 14798000 9358600 7413800 10049000 15860000 12847000 21669000 1243600 25055000 11968000 11977000 14657000 9616100 8165100 9786400 15038000 2 2 1 2 2 2 2 2 2 2 2 3409600000 1794800000 1614800000 4682 502;639 4367 25902;25903;25904;25905 31074;31075;31076;31077;31078 31074 5 EQGVTFPSGDIQEQLIR Unmodified 1915.964 0.96395543 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 3.7 0.9 1 3 4 2 5 5 64.861 64.724 2;3 3.4519E-93 20859 20211116_3442_TMUAki_TMT10x_S_F4 337.9 250.23 53631000 91204000 487960 89576000 58309000 88527000 58910000 66136000 66110000 64454000 68526000 49936000 85097000 3924900 91481000 55925000 89747000 59946000 68322000 67026000 63018000 66030000 13 13 5 13 13 13 13 13 13 13 13 30613000 52236000 196530 51402000 32360000 63306000 34623000 38375000 37131000 37948000 37575000 28504000 48738000 2002700 52675000 31087000 63198000 35079000 40263000 37681000 37079000 36233000 7 7 3 7 7 7 7 7 7 7 7 23017000 38968000 291430 38174000 25949000 25220000 24287000 27761000 28978000 26506000 30952000 21431000 36358000 1922200 38806000 24838000 26549000 24867000 28060000 29345000 25939000 29797000 6 6 2 6 6 6 6 6 6 6 6 6638200000 3614300000 3023900000 4683 1092 4368 25906;25907;25908;25909;25910;25911;25912;25913;25914;25915 31079;31080;31081;31082;31083;31084;31085;31086;31087;31088;31089;31090;31091;31092;31093 31090 15 EQHGVAASCLEDLR Unmodified 1583.7362 0.7362041 79 O00273;O00273-2 DFFA DNA fragmentation factor subunit alpha yes no 0 0 0 0 By MS/MS By MS/MS 2.3 0.781 1 6 2 1 2 8 35.902 35.81 3 7.8152E-20 10250 20211116_3429_TMUAki_TMT10x_P_F2 177.39 155.48 2283200 3688800 38229 4420900 5497100 4700900 3069500 3671500 4494900 2994200 3930800 2126200 3444800 269400 4462500 5212200 4748600 3284600 3764600 4490400 2952200 3809400 9 9 8 9 9 9 9 9 9 9 9 1329100 2097600 20222 2526800 4587500 3896700 2105800 2323200 3002600 1773600 2335200 1237600 1958900 174670 2567900 4337600 3849900 2293600 2425100 2991700 1754800 2273300 3 3 3 3 3 3 3 3 3 3 3 954140 1591200 18007 1894100 909550 804190 963670 1348300 1492300 1220600 1595700 888540 1485900 94726 1894600 874570 898710 991030 1339500 1498700 1197400 1536100 6 6 5 6 6 6 6 6 6 6 6 802900000 485090000 317820000 4684 79 4369 25916;25917;25918;25919;25920;25921;25922;25923;25924;25925 31094;31095;31096;31097;31098;31099;31100;31101;31102;31103;31104;31105 31094 12 EQHPTKIPVIIER Unmodified 1558.8831 0.88312633 13 Q9GZQ8;A6NCE7 MAP1LC3B;MAP1LC3B2 Microtubule-associated proteins 1A/1B light chain 3B;Microtubule-associated proteins 1A/1B light chain 3 beta 2 yes no 0 0 0 1 By MS/MS 5 0 1 1 37.807 37.953 4 4.8765E-09 8721 20211116_3444_TMUAki_TMT10x_S_F5 127.03 105.8 358720 629600 3458.9 718290 416870 334180 322290 757720 834370 664010 768980 334030 587810 33778 720770 397550 373650 347710 746220 824100 652370 743830 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 358720 629600 3458.9 718290 416870 334180 322290 757720 834370 664010 768980 334030 587810 33778 720770 397550 373650 347710 746220 824100 652370 743830 1 1 1 1 1 1 1 1 1 1 1 53684000 0 53684000 4685 13 4370 25926 31106 31106 1 EQILEEFSK Unmodified 1121.5605 0.56045479 271;272 O60506;O60506-2;O60506-3;O60506-4;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 0 By MS/MS By MS/MS 3.25 0.829 1 1 2 3 1 63.44 63.283 2 0.00024102 21038 20211116_3429_TMUAki_TMT10x_P_F2 132.78 64.044 19689000 33040000 294160 35853000 41892000 40467000 28272000 22991000 23086000 23229000 29202000 18333000 30840000 2108400 36446000 39836000 40548000 29230000 24264000 23930000 22676000 27981000 4 4 2 4 4 4 4 4 4 4 4 14324000 23257000 294160 26579000 33019000 34544000 22809000 16832000 17258000 16759000 20254000 13339000 21714000 1620700 27000000 31414000 34302000 23498000 18005000 17906000 16371000 19446000 3 3 2 3 3 3 3 3 3 3 3 5364200 9782500 0 9273800 8873000 5923400 5463400 6158400 5828800 6469400 8947700 4994600 9126200 487770 9446600 8421800 6246300 5731300 6258900 6024400 6305500 8535000 1 1 0 1 1 1 1 1 1 1 1 2383100000 1887600000 495590000 4686 271;272 4371 25927;25928;25929;25930 31107;31108;31109;31110 31107 4 EQIREDILENQFMDSR Oxidation (M) 2037.9426 0.94256806 839 P28161;P28161-2 GSTM2 Glutathione S-transferase Mu 2 yes no 0 0 1 1 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 51.67 51.466 3 2.9556E-06 16202 20211116_3429_TMUAki_TMT10x_P_F2 90.561 73.895 2694800 4891900 40804 5073100 2576300 2536600 2380900 3885000 4136800 3551100 4048600 2509400 4565300 259780 5124700 2467800 2770900 2479600 3871900 4128500 3481900 3908300 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2694800 4891900 40804 5073100 2576300 2536600 2380900 3885000 4136800 3551100 4048600 2509400 4565300 259780 5124700 2467800 2770900 2479600 3871900 4128500 3481900 3908300 3 3 3 3 3 3 3 3 3 3 3 431220000 137320000 293900000 4687 839 4372 25931;25932;25933;25934;25935 31111;31112;31113;31114 31111 1011 4 EQISDIDDAVR Unmodified 1259.5994 0.59935949 1215 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes yes 0 0 0 0 By MS/MS By MS/MS 1.83 0.687 2 3 1 4 2 44.258 44.131 2;3 3.201E-59 13670 20211116_3439_TMUAki_TMT10x_S_F1 320.59 227.41 6599300 9391900 45474 15477000 23854000 15177000 8069300 11027000 14993000 7340300 12182000 6144600 8786400 779070 15355000 22475000 15387000 9224800 11311000 14850000 7320800 11838000 4 4 2 4 4 4 4 4 4 4 4 3989200 5710600 39638 9287700 21905000 13579000 6222700 6703700 9153600 4542300 7457800 3714500 5341900 604910 9286500 20611000 13414000 7222700 7098100 9123800 4525200 7246800 2 2 1 2 2 2 2 2 2 2 2 2610200 3681400 5836.2 6189300 1949500 1598300 1846700 4323300 5839100 2798000 4723700 2430100 3444500 174150 6068300 1864500 1972700 2002100 4212500 5726000 2795500 4591300 2 2 1 2 2 2 2 2 2 2 2 1802900000 1288100000 514850000 4688 1215 4373 25936;25937;25938;25939;25940;25941 31115;31116;31117;31118;31119;31120 31119 6 EQIVPKPEEEVAQK Unmodified 1622.8516 0.85155143 721 P18621;P18621-3;P18621-2 RPL17 60S ribosomal protein L17 yes no 0 0 0 1 By MS/MS By MS/MS 3.75 1.16 2 3 4 2 1 6 6 43.594 43.592 3;4 5.9747E-19 11780 20211116_3431_TMUAki_TMT10x_P_F4 166.52 139.27 26324000 40906000 214880 54366000 70150000 49953000 32649000 36789000 48487000 28507000 44761000 24511000 38220000 2856400 54446000 66324000 50866000 35569000 37821000 48502000 28183000 43295000 17 17 9 17 17 17 17 17 17 17 17 14827000 22646000 180700 29513000 59379000 41138000 21821000 20493000 26914000 15546000 24298000 13806000 21157000 1912200 29797000 55995000 40728000 24255000 21730000 27064000 15387000 23521000 9 9 5 9 9 9 9 9 9 9 9 11497000 18260000 34180 24853000 10771000 8815200 10829000 16296000 21573000 12961000 20463000 10705000 17063000 944180 24649000 10329000 10138000 11314000 16091000 21437000 12796000 19774000 8 8 4 8 8 8 8 8 8 8 8 3968800000 2337400000 1631400000 4689 721 4374 25942;25943;25944;25945;25946;25947;25948;25949;25950;25951;25952;25953 31121;31122;31123;31124;31125;31126;31127;31128;31129;31130;31131;31132;31133;31134;31135;31136;31137;31138 31125 18 EQIVPKPEEEVAQKK Unmodified 1750.9465 0.94651445 721 P18621;P18621-3;P18621-2 RPL17 60S ribosomal protein L17 yes no 0 0 0 2 By MS/MS 5 0 1 1 41.509 41.633 4 1.9669E-06 10187 20211116_3444_TMUAki_TMT10x_S_F5 110.22 86.175 2010800 3638500 86.742 3901100 2104500 1521000 1881300 2049900 2944800 1912000 3123100 1872200 3396100 168100 3925600 2012300 1708200 1952900 2053400 2955600 1873100 3007200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2010800 3638500 86.742 3901100 2104500 1521000 1881300 2049900 2944800 1912000 3123100 1872200 3396100 168100 3925600 2012300 1708200 1952900 2053400 2955600 1873100 3007200 1 1 1 1 1 1 1 1 1 1 1 357330000 0 357330000 4690 721 4375 25954 31139 31139 1 EQIVVDLSHPGVSEDDQVSR Unmodified 2208.0659 0.065854319 283 O60701;O60701-3;O60701-2 UGDH UDP-glucose 6-dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 52.573 52.45 3 1.3342E-32 16533 20211116_3429_TMUAki_TMT10x_P_F2 194.24 184.14 16852000 28112000 109650 28691000 21625000 30238000 17983000 25980000 24481000 23627000 23783000 15691000 26234000 1276500 29252000 20643000 30613000 18633000 26559000 24596000 23172000 22964000 11 11 6 11 11 11 11 11 11 11 11 9548000 15697000 50156 15659000 13922000 22890000 11575000 13790000 13817000 13853000 13750000 8889800 14647000 809100 16086000 13287000 22669000 11933000 14482000 13956000 13527000 13266000 6 6 3 6 6 6 6 6 6 6 6 7304000 12415000 59490 13032000 7702900 7347200 6408600 12190000 10664000 9773600 10033000 6801000 11587000 467350 13166000 7355500 7944300 6700000 12077000 10640000 9645000 9697800 5 5 3 5 5 5 5 5 5 5 5 7012600000 4125800000 2886800000 4691 283 4376 25955;25956;25957;25958;25959;25960;25961;25962 31140;31141;31142;31143;31144;31145;31146;31147;31148;31149;31150 31142 11 EQIYDVYR Unmodified 1084.5189 0.51892433 973 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 43.797 43.772 2 0.0020963 12249 20211116_3442_TMUAki_TMT10x_S_F4 113.74 84.59 7384100 11428000 75823 17169000 8588300 7125400 5873400 13026000 13998000 9688600 13520000 6875700 10685000 674620 16959000 8169600 8010900 6351100 12846000 13868000 9599900 13057000 4 4 3 4 4 4 4 4 4 4 4 999590 1373600 25502 2113100 3822200 2900500 1516000 1908400 2013300 1326400 1619900 930910 1284400 146170 2115200 3608500 2883900 1673700 1973000 2012400 1319400 1574800 1 1 1 1 1 1 1 1 1 1 1 6384500 10055000 50322 15056000 4766100 4224900 4357400 11117000 11985000 8362300 11901000 5944800 9400700 528440 14844000 4561100 5127000 4677400 10873000 11856000 8280500 11483000 3 3 2 3 3 3 3 3 3 3 3 368580000 168160000 200430000 4692 973 4377 25963;25964;25965;25966 31151;31152;31153;31154;31155 31154 5 EQKYEDGIALLR Unmodified 1433.7514 0.75144346 3145 Q9UJX3;Q9UJX3-2 ANAPC7 Anaphase-promoting complex subunit 7 yes no 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 50.89 51.087 3 0.0095679 15082 20211116_3433_TMUAki_TMT10x_P_F5 60.55 35.758 3876100 6190100 0 7056500 8425100 8542700 5231100 5049400 4539100 4296100 5386300 3608500 5779300 325780 7159800 7994200 8532500 5451700 5287600 4678100 4226800 5169700 1 1 0 1 1 1 1 1 1 1 1 3876100 6190100 0 7056500 8425100 8542700 5231100 5049400 4539100 4296100 5386300 3608500 5779300 325780 7159800 7994200 8532500 5451700 5287600 4678100 4226800 5169700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 224030000 224030000 0 4693 3145 4378 25967;25968 31156;31157 31156 2 EQLAIAEFAR Unmodified 1146.6033 0.60332266 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 By MS/MS By MS/MS 3.29 1.03 2 2 2 1 4 3 56.625 56.514 2 3.5169E-08 17426 20211116_3442_TMUAki_TMT10x_S_F4 161.51 110.45 47022000 76238000 471690 82835000 72150000 92091000 55897000 75123000 73599000 66388000 69469000 43785000 71163000 4674600 84178000 68800000 92864000 58096000 76974000 73953000 65198000 67142000 8 8 7 8 8 8 8 8 8 8 8 29816000 46499000 409550 51378000 53841000 74919000 41432000 46277000 45213000 40607000 42849000 27765000 43407000 3190200 52422000 51338000 74227000 42792000 48327000 45747000 39892000 41408000 5 5 5 5 5 5 5 5 5 5 5 17205000 29739000 62134 31457000 18309000 17172000 14464000 28846000 28386000 25781000 26619000 16020000 27756000 1484500 31756000 17461000 18637000 15304000 28648000 28206000 25306000 25734000 3 3 2 3 3 3 3 3 3 3 3 11666000000 6435500000 5230500000 4694 712 4379 25969;25970;25971;25972;25973;25974;25975 31158;31159;31160;31161;31162;31163;31164;31165 31165 8 EQLAQAMFDHIPVGVGSK Oxidation (M) 1941.9618 0.96184694 3285 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog yes yes 0 0 1 0 By MS/MS By MS/MS 6.25 0.829 1 1 2 1 3 55.865 56.237 3 3.6567E-08 16064 20211116_3444_TMUAki_TMT10x_S_F5 105.77 89.03 23616000 41674000 424040 40587000 27723000 31093000 23780000 31170000 33996000 30550000 31523000 21992000 38883000 2343100 41340000 26504000 32263000 24643000 31669000 34050000 29862000 30485000 7 7 5 7 7 7 7 7 7 7 7 7523800 12490000 274060 12385000 10681000 16649000 9253000 9967400 10270000 9273700 9727300 7007500 11654000 923410 12706000 10222000 16548000 9491800 10451000 10384000 9085700 9400300 2 2 2 2 2 2 2 2 2 2 2 16093000 29184000 149970 28202000 17042000 14444000 14527000 21203000 23726000 21276000 21796000 14984000 27228000 1419700 28635000 16282000 15715000 15152000 21219000 23666000 20777000 21085000 5 5 3 5 5 5 5 5 5 5 5 2311700000 514820000 1796900000 4695 3285 4380 25976;25977;25978;25979 31166;31167;31168;31169;31170;31171;31172 31168 3248 7 EQLAQAMFDHIPVGVGSK Unmodified 1925.9669 0.96693232 3285 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog yes yes 0 0 0 0 By MS/MS By MS/MS 6.2 2.64 1 2 2 2 3 70.791 70.924 3 6.5519E-06 22686 20211116_3436_TMUAki_TMT10x_P_F8 86.8 71.208 51167000 82303000 569530 85832000 54687000 60976000 60495000 34308000 29152000 35420000 57116000 47642000 76811000 4399600 86942000 52589000 63052000 60089000 36261000 32021000 34548000 54232000 9 9 3 9 9 9 9 9 9 9 9 31916000 49834000 11218 51625000 30884000 42492000 35277000 19942000 16783000 20825000 33279000 29715000 46507000 2363400 52402000 29706000 43345000 34981000 21440000 18469000 20303000 31593000 5 5 1 5 5 5 5 5 5 5 5 19250000 32469000 558310 34207000 23803000 18484000 25218000 14366000 12369000 14595000 23837000 17927000 30304000 2036200 34539000 22884000 19707000 25108000 14821000 13552000 14245000 22640000 4 4 2 4 4 4 4 4 4 4 4 4639100000 2700300000 1938800000 4696 3285 4380 25980;25981;25982;25983;25984 31173;31174;31175;31176;31177;31178;31179;31180;31181;31182 31177 10 EQLEAAKPEPVIEEVDLANLAPR Unmodified 2530.3279 0.32788266 2298 Q8WUD4 CCDC12 Coiled-coil domain-containing protein 12 yes yes 0 0 0 1 By MS/MS 2 0 1 1 72.299 72.186 3 1.6957E-08 23319 20211116_3440_TMUAki_TMT10x_S_F2 98.533 91.173 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4697 2298 4381 25985 31183 31183 1 EQLHLVMQGDVIR Oxidation (M) 1552.8032 0.80316145 2629 Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 0 0 1 0 By MS/MS 3 0 1 1 40.835 40.889 3 0.01545 12135 20211116_3430_TMUAki_TMT10x_P_F3 52.42 36.881 414660 636350 0 647510 890520 841120 493640 435620 467130 392890 547650 386060 593820 36219 662670 843580 835820 520650 462100 479240 385470 525810 2 2 0 2 2 2 2 2 2 2 2 414660 636350 0 647510 890520 841120 493640 435620 467130 392890 547650 386060 593820 36219 662670 843580 835820 520650 462100 479240 385470 525810 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50199000 50199000 0 4698 2629 4382 25986 31184;31185 31185 2873 2 EQLIIPQVPLFNILAK Unmodified 1835.0921 0.092056477 1906 Q53GS9;Q53GS9-2;Q53GS9-3 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.745 1 2 3 2 4 81.896 81.879 2;3 1.2037E-14 27869 20211116_3442_TMUAki_TMT10x_S_F4 144.1 125.79 24247000 37078000 195580 46515000 23040000 27406000 26525000 13630000 13034000 16805000 22786000 22577000 34633000 1216700 46501000 22187000 28789000 26305000 14648000 14196000 16282000 21679000 7 7 2 7 7 7 7 7 7 7 7 13250000 16964000 0 21064000 9738000 16768000 11002000 6467300 5703800 8227600 9798900 12337000 15845000 294790 21135000 9367700 17116000 10930000 7148100 6179800 7962900 9325800 2 2 0 2 2 2 2 2 2 2 2 10997000 20114000 195580 25451000 13302000 10638000 15522000 7162800 7330100 8577200 12987000 10240000 18788000 921890 25365000 12820000 11673000 15375000 7500400 8016400 8318700 12353000 5 5 2 5 5 5 5 5 5 5 5 3500900000 1595700000 1905200000 4699 1906 4383 25987;25988;25989;25990;25991;25992 31186;31187;31188;31189;31190;31191;31192 31192 7 EQLLQSNPVLEAFGNAK Unmodified 1856.9632 0.96322715 245 O43795;O43795-2;Q9UBC5 MYO1B;MYO1A Unconventional myosin-Ib;Unconventional myosin-Ia yes no 0 0 0 0 By MS/MS By MS/MS 7.25 0.433 3 1 2 2 78.014 78.077 3 6.9307E-08 27478 20211116_3446_TMUAki_TMT10x_S_F7 112.3 93.224 3439600 6428900 59641 5360100 4962600 4496100 4744100 4380500 4401100 4576800 4525100 3203000 5994900 362080 5530700 4756500 4631000 4813000 4465500 4496800 4461900 4361400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3439600 6428900 59641 5360100 4962600 4496100 4744100 4380500 4401100 4576800 4525100 3203000 5994900 362080 5530700 4756500 4631000 4813000 4465500 4496800 4461900 4361400 1 1 1 1 1 1 1 1 1 1 1 703420000 0 703420000 4700 245 4384 25993;25994;25995;25996 31193;31194;31195;31196 31195 4 EQLMREEAEQK Oxidation (M) 1405.6507 0.65074314 1709 Q14444;Q14444-2 CAPRIN1 Caprin-1 yes no 0 0 1 1 By MS/MS 2 0 1 1 30.148 29.918 3 0.067149 7534 20211116_3429_TMUAki_TMT10x_P_F2 42.843 27.681 212520 335170 0 345650 298760 387870 309410 203710 243360 170830 299840 197860 312790 15779 352510 286530 388390 311240 215430 252470 168200 287500 1 1 0 1 1 1 1 1 1 1 1 212520 335170 0 345650 298760 387870 309410 203710 243360 170830 299840 197860 312790 15779 352510 286530 388390 311240 215430 252470 168200 287500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10878000 10878000 0 4701 1709 4385 25997 31197 31197 2295 1 EQLPIFK Unmodified 873.496 0.49600404 1464 Q00059;Q00059-2 TFAM Transcription factor A, mitochondrial yes no 0 0 0 0 By MS/MS 5 0 1 1 57.363 57.498 2 0.057794 16584 20211116_3444_TMUAki_TMT10x_S_F5 65.246 31.074 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4702 1464 4386 25998 31198 31198 1 EQMQPTHPIR Oxidation (M) 1251.603 0.60300508 1515 Q04917 YWHAH 14-3-3 protein eta yes yes 0 0 1 0 By MS/MS 3 0 1 1 24.968 24.663 3 0.00025788 6986 20211116_3441_TMUAki_TMT10x_S_F3 100.92 80.782 49202 78810 3829 75749 59414 52062 67211 37649 41964 39912 57778 45841 73527 7790.8 77138 57397 54175 66986 39074 44358 38887 55247 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 49202 78810 3829 75749 59414 52062 67211 37649 41964 39912 57778 45841 73527 7790.8 77138 57397 54175 66986 39074 44358 38887 55247 1 1 1 1 1 1 1 1 1 1 1 3893400 0 3893400 4703 1515 4387 25999 31199 31199 2052 1 EQMQPTHPIR Unmodified 1235.6081 0.60809046 1515 Q04917 YWHAH 14-3-3 protein eta yes yes 0 0 0 0 By MS/MS 3 0 1 1 27.966 27.683 3 0.00033857 8164 20211116_3441_TMUAki_TMT10x_S_F3 97.734 80.266 79511 149860 2920.7 137620 95278 96770 104320 65763 74744 68678 106110 74054 139790 9534.8 140640 91761 100410 104430 68515 78447 66954 101390 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 79511 149860 2920.7 137620 95278 96770 104320 65763 74744 68678 106110 74054 139790 9534.8 140640 91761 100410 104430 68515 78447 66954 101390 1 1 1 1 1 1 1 1 1 1 1 5966100 0 5966100 4704 1515 4387 26000 31200 31200 1 EQNIVFNAETYSNLIK Unmodified 1881.9472 0.94724273 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5.83 1.07 2 2 4 4 6 6 75.789 75.818 2;3 8.6586E-47 24080 20211116_3434_TMUAki_TMT10x_P_F6 249.75 215.57 90566000 150930000 1171700 136610000 81550000 106800000 105440000 68942000 66213000 76678000 98516000 84331000 140780000 8087500 139930000 78840000 109790000 104490000 72238000 70223000 74569000 94035000 21 21 10 21 21 21 21 21 21 21 21 49279000 80388000 434230 73224000 37318000 62467000 48729000 36302000 34899000 39825000 51932000 45885000 74983000 4036200 75046000 36076000 63713000 48403000 38335000 36713000 38750000 49570000 12 12 6 12 12 12 12 12 12 12 12 41287000 70540000 737460 63382000 44232000 44335000 56712000 32640000 31314000 36853000 46583000 38447000 65795000 4051300 64881000 42764000 46078000 56087000 33903000 33509000 35819000 44465000 9 9 4 9 9 9 9 9 9 9 9 12178000000 5312700000 6865800000 4705 1018 4388 26001;26002;26003;26004;26005;26006;26007;26008;26009;26010;26011;26012 31201;31202;31203;31204;31205;31206;31207;31208;31209;31210;31211;31212;31213;31214;31215;31216;31217;31218;31219;31220 31206 20 EQNSALPTSSQDEELMEVVEK Unmodified 2362.0846 0.08460043 3216 Q9UQ35;Q9UQ35-2 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 3 2 1 71.215 71.141 3 1.9356E-07 24669 20211116_3439_TMUAki_TMT10x_S_F1 90.193 74.939 2529900 4580100 28537 4409400 3000700 2310600 3063200 2188800 2038800 2393500 3072000 2355800 4273100 242940 4478900 2880500 2480600 3072200 2237700 2155700 2329200 2931500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2529900 4580100 28537 4409400 3000700 2310600 3063200 2188800 2038800 2393500 3072000 2355800 4273100 242940 4478900 2880500 2480600 3072200 2237700 2155700 2329200 2931500 2 2 2 2 2 2 2 2 2 2 2 564520000 239880000 324640000 4706 3216 4389 26013;26014;26015 31221;31222;31223 31222 3 EQQAQVEKEDFSDMVAEHAAK Unmodified 2389.0856 0.085603483 1633 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 0 1 By MS/MS 3 0 1 1 54.079 53.904 4 3.6102E-07 17718 20211116_3430_TMUAki_TMT10x_P_F3 89.028 74.415 1694800 3045800 9915 3164100 3343700 4107500 2604000 2317100 2033100 2033000 2572600 1578100 2842500 172850 3233700 3188100 4086100 2662400 2437700 2112400 1997300 2465000 1 1 1 1 1 1 1 1 1 1 1 1694800 3045800 9915 3164100 3343700 4107500 2604000 2317100 2033100 2033000 2572600 1578100 2842500 172850 3233700 3188100 4086100 2662400 2437700 2112400 1997300 2465000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 329360000 329360000 0 4707 1633 4390 26016 31224 31224 1 EQQEAIEHIDEVQNEIDR Unmodified 2194.0138 0.013818748 1478 Q01105;Q01105-2;Q01105-3;Q01105-4;P0DME0 SET;SETSIP Protein SET;Protein SETSIP yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 53.309 53.164 3 6.5243E-41 15303 20211116_3428_TMUAki_TMT10x_P_F1 210.12 187.13 2459500 3903300 0 4560500 2596500 3451200 2451300 2479800 2718000 2178800 2957100 2289900 3644700 187010 4589500 2484800 3562400 2502300 2561300 2761900 2140300 2845200 2 2 0 2 2 2 2 2 2 2 2 1531000 2252000 0 2580000 1807700 2721700 1682300 1400700 1440900 1208800 1801700 1425400 2102600 116070 2611000 1729200 2734300 1705500 1485000 1489200 1188500 1726900 1 1 0 1 1 1 1 1 1 1 1 928520 1651300 0 1980500 788820 729460 768990 1079200 1277200 969980 1155400 864510 1542100 70937 1978500 755600 828150 796790 1076300 1272700 951830 1118300 1 1 0 1 1 1 1 1 1 1 1 1098900000 680080000 418860000 4708 1478 4391 26017;26018 31225;31226 31225 2 EQQEAIEHIDEVQNEIDRLNEQASEEILK Unmodified 3448.6594 0.65940015 1478 Q01105;Q01105-2;Q01105-3;Q01105-4 SET Protein SET yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 77.971 77.944 4 6.9564E-53 25451 20211116_3428_TMUAki_TMT10x_P_F1 213.77 202.9 49447000 69165000 764910 101490000 36929000 39649000 42035000 16597000 19822000 19766000 41889000 46046000 64659000 4637100 100330000 35584000 43688000 41683000 18133000 21921000 19174000 39725000 5 5 5 5 5 5 5 5 5 5 5 33189000 45056000 518480 68005000 22865000 30148000 25665000 11115000 12409000 13485000 27580000 30906000 42128000 3090200 67189000 22026000 32620000 25477000 12333000 13743000 13073000 26136000 3 3 3 3 3 3 3 3 3 3 3 16258000 24109000 246430 33482000 14064000 9500600 16369000 5482100 7412800 6280900 14308000 15140000 22531000 1546800 33136000 13558000 11067000 16206000 5800500 8177800 6101300 13589000 2 2 2 2 2 2 2 2 2 2 2 6269700000 3696400000 2573200000 4709 1478 4392 26019;26020 31227;31228;31229;31230;31231 31227 5 EQQHVMEELFQSSFR Oxidation (M) 1909.8629 0.86286118 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 0 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 47.906 47.839 3 2.5745E-19 16238 20211116_3441_TMUAki_TMT10x_S_F3 160.8 152.84 4582300 7422100 90989 8087200 5143500 6413400 4879000 6151500 6563900 6059800 6331400 4267100 6928100 454680 8178300 4929500 6630900 5014900 6264900 6595600 5922100 6114900 4 4 2 4 4 4 4 4 4 4 4 1531700 2562900 48453 2879200 2891200 3484300 2092000 2378200 2428500 2202500 2394500 1426500 2392600 181210 2923900 2754500 3487400 2174200 2468500 2454600 2158300 2310900 2 2 1 2 2 2 2 2 2 2 2 3050600 4859300 42537 5208100 2252300 2929100 2786900 3773300 4135400 3857300 3937000 2840700 4535500 273470 5254400 2175100 3143500 2840700 3796300 4141000 3763800 3804000 2 2 1 2 2 2 2 2 2 2 2 1096300000 491610000 604720000 4710 1433 4393 26021;26022;26023;26024;26025 31232;31233;31234;31235;31236;31237 31235 1937 6 EQQHVMEELFQSSFRR Oxidation (M) 2065.964 0.9639722 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 1 By MS/MS 5 0 1 1 40.493 40.616 4 1.9965E-07 9780 20211116_3444_TMUAki_TMT10x_S_F5 108.77 97.979 936020 1444000 15534 1603300 938200 829720 932940 1679800 1351800 1255400 1475300 871640 1348000 92110 1612800 900400 912090 959570 1652300 1361300 1243500 1419300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 936020 1444000 15534 1603300 938200 829720 932940 1679800 1351800 1255400 1475300 871640 1348000 92110 1612800 900400 912090 959570 1652300 1361300 1243500 1419300 1 1 1 1 1 1 1 1 1 1 1 378200000 0 378200000 4711 1433 4394 26026 31238 31238 1937 1 EQQIVIQSSGGLSKDDIENMVK Unmodified 2417.2108 0.210804 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 5.67 1.25 1 1 3 3 4 7 5 66.177 66.362 3;4 2.9287E-35 21288 20211116_3433_TMUAki_TMT10x_P_F5 189.33 176.65 109200000 169970000 823860 190070000 109020000 109930000 132470000 40137000 33032000 55787000 106460000 101680000 158680000 9187300 191290000 105130000 115370000 130060000 44800000 40562000 53840000 100430000 17 17 8 17 17 17 17 17 17 17 17 57474000 86570000 260630 96287000 60621000 72018000 74113000 20847000 16660000 28651000 53334000 53514000 80815000 4773700 97180000 58463000 73714000 72692000 24012000 20764000 27660000 50314000 10 10 4 10 10 10 10 10 10 10 10 51729000 83404000 563230 93783000 48397000 37914000 58353000 19290000 16373000 27137000 53130000 48167000 77864000 4413600 94106000 46667000 41652000 57370000 20788000 19798000 26180000 50115000 7 7 4 7 7 7 7 7 7 7 7 14257000000 7884100000 6373200000 4712 972 4395 26027;26028;26029;26030;26031;26032;26033;26034;26035;26036;26037;26038 31239;31240;31241;31242;31243;31244;31245;31246;31247;31248;31249;31250;31251;31252;31253;31254;31255;31256 31240 18 EQQIVIQSSGGLSKDDIENMVK Oxidation (M) 2433.2057 0.20571862 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 1 1 By MS/MS By MS/MS 4.9 1.04 1 3 2 4 5 5 56.983 57.036 3;4 5.9055E-14 17152 20211116_3431_TMUAki_TMT10x_P_F4 124.19 105.95 51127000 87647000 189640 80454000 63538000 97290000 60361000 87339000 98678000 91361000 75047000 47600000 81757000 3932300 82836000 60812000 97850000 62579000 89422000 97873000 89063000 73126000 13 13 6 13 13 13 13 13 13 13 13 26818000 44148000 87437 41194000 39381000 66696000 33877000 43179000 49851000 46037000 37820000 24967000 41184000 2068900 42614000 37601000 65844000 35145000 45174000 49589000 44845000 36856000 7 7 3 7 7 7 7 7 7 7 7 24309000 43499000 102200 39260000 24157000 30594000 26484000 44160000 48827000 45324000 37226000 22633000 40573000 1863400 40222000 23211000 32006000 27434000 44249000 48284000 44218000 36270000 6 6 3 6 6 6 6 6 6 6 6 10348000000 5317400000 5030700000 4713 972 4395 26039;26040;26041;26042;26043;26044;26045;26046;26047;26048 31257;31258;31259;31260;31261;31262;31263;31264;31265;31266;31267;31268;31269;31270 31257 1233 14 EQQLAEIEAR Unmodified 1185.599 0.59896556 1422 Q5JPE7;Q15155;P69849;Q5JPE7-2;Q5JPE7-3 NOMO2;NOMO1;NOMO3 Nodal modulator 2;Nodal modulator 1;Nodal modulator 3 yes no 0 0 0 0 By MS/MS 1 0 1 1 40.322 40.183 2 0.010245 12115 20211116_3439_TMUAki_TMT10x_S_F1 66.92 41.112 398310 599810 0 818190 317150 268890 311350 403910 433200 373530 543670 370860 560500 31700 811050 303940 310840 319890 402940 439300 366070 521040 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 398310 599810 0 818190 317150 268890 311350 403910 433200 373530 543670 370860 560500 31700 811050 303940 310840 319890 402940 439300 366070 521040 1 1 0 1 1 1 1 1 1 1 1 10860000 0 10860000 4714 1422 4396 26049 31271 31271 1 EQREEAAEVASLDVANIISGSGRPR Unmodified 2653.342 0.3419696 2702 Q9BW71;Q9BW71-2 HIRIP3 HIRA-interacting protein 3 yes no 0 0 0 2 By MS/MS By MS/MS 3.25 0.829 1 1 2 2 2 60.682 60.508 4 1.0194E-48 18693 20211116_3431_TMUAki_TMT10x_P_F4 215.07 206.57 7430500 13611000 229960 12438000 9186800 10136000 8553800 9523900 9295000 9293000 10489000 6920200 12696000 844070 12737000 8806000 10454000 8732500 9707200 9466000 9085600 10082000 3 3 2 3 3 3 3 3 3 3 3 1903300 3760800 62287 3135600 2536700 4275500 2522000 2311000 2415000 2616600 2709000 1772700 3506900 224720 3260000 2435700 4241100 2555600 2458000 2472000 2542900 2604200 1 1 1 1 1 1 1 1 1 1 1 5527200 9850500 167670 9302600 6650100 5860100 6031800 7212900 6880000 6676500 7780200 5147500 9189500 619350 9477400 6370300 6212600 6176900 7249300 6994000 6542700 7477400 2 2 1 2 2 2 2 2 2 2 2 4252500000 2080800000 2171600000 4715 2702 4397 26050;26051;26052;26053 31272;31273;31274 31272 3 EQRGEPETFLPLDYLEVKPTDEK Unmodified 2732.3545 0.35449135 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 2 By MS/MS By MS/MS 3 0 2 1 1 70.215 69.86 4 1.4426E-20 24189 20211116_3430_TMUAki_TMT10x_P_F3 149.18 125.88 12764000 21792000 0 21620000 16465000 17872000 14850000 11058000 13163000 13243000 16261000 11884000 20334000 1021700 22012000 15741000 18285000 15095000 11652000 13575000 12844000 15591000 4 4 0 4 4 4 4 4 4 4 4 5577600 8703000 0 8943500 5344700 9945700 6209300 4264500 5279500 5401500 6450200 5193000 8121700 424980 9121800 5144300 9942500 6224400 4656600 5453300 5228500 6186100 1 1 0 1 1 1 1 1 1 1 1 7186200 13089000 0 12677000 11120000 7926000 8640500 6793700 7883500 7841800 9810800 6690600 12212000 596690 12890000 10596000 8342000 8870700 6995900 8121600 7615500 9404500 3 3 0 3 3 3 3 3 3 3 3 2789900000 1069400000 1720400000 4716 1723 4398 26054;26055 31275;31276;31277;31278 31275 4 EQSGTIYLQHADEEREK Unmodified 2031.9498 0.94976193 963 P37198 NUP62 Nuclear pore glycoprotein p62 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 34.086 33.941 4 7.2746E-16 7996 20211116_3431_TMUAki_TMT10x_P_F4 157.12 130.69 1903200 2715000 403.31 3050000 4930400 3304100 2218300 1881200 2299600 1654100 2683900 1771900 2534600 167810 3091600 4657200 3318400 2394500 1977700 2349600 1624900 2577100 3 3 1 3 3 3 3 3 3 3 3 1408800 1952000 403.31 2215500 4453600 2913900 1694000 1332600 1714400 1225000 1983100 1311600 1822400 139050 2252000 4199600 2889900 1863200 1431500 1752700 1200900 1904700 2 2 1 2 2 2 2 2 2 2 2 494440 762930 0 834530 476800 390220 524330 548600 585260 429100 700800 460270 712160 28756 839650 457600 428490 531250 546210 596830 424000 672460 1 1 0 1 1 1 1 1 1 1 1 256000000 182250000 73744000 4717 963 4399 26056;26057;26058 31279;31280;31281 31280 3 EQSIFGDHRDEEEETHMK Oxidation (M) 2231.9389 0.93893925 1858 Q16643;Q16643-3;Q16643-2 DBN1 Drebrin yes no 0 0 1 1 By MS/MS By MS/MS 1.57 0.728 4 2 1 4 3 32.593 32.503 4;5 1.9248E-17 8489 20211116_3429_TMUAki_TMT10x_P_F2 151.57 138.14 2577100 3330900 7456.6 6022300 9214700 5248200 3037200 2223900 3046000 2532600 3725000 2399300 3118200 188660 5942000 8678700 5326300 3404000 2423000 3122500 2460800 3572300 7 7 2 7 7 7 7 7 7 7 7 1637800 1927600 2474.2 3804100 8462000 4594200 2288700 1457600 1848000 1617300 2239600 1524700 1805700 111580 3760000 7957000 4561100 2630600 1645100 1913200 1572900 2148300 4 4 1 4 4 4 4 4 4 4 4 939310 1403300 4982.4 2218200 752730 653950 748540 766340 1198000 915360 1485400 874600 1312500 77085 2182000 721760 765220 773400 777960 1209200 887850 1424000 3 3 1 3 3 3 3 3 3 3 3 799170000 590720000 208440000 4718 1858 4400 26059;26060;26061;26062;26063;26064;26065 31282;31283;31284;31285;31286;31287;31288 31284 2473 7 EQSIFGDHRDEEEETHMK Unmodified 2215.944 0.94402462 1858 Q16643;Q16643-3;Q16643-2 DBN1 Drebrin yes no 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 35.967 35.841 5 1.3417E-05 11324 20211116_3441_TMUAki_TMT10x_S_F3 83.253 73.465 1413300 1887000 15161 3024300 2852300 1752500 1462400 1436200 1423500 1284500 2034900 1316000 1765000 143920 2986000 2700400 1856700 1554900 1471600 1471600 1260700 1944100 3 3 2 3 3 3 3 3 3 3 3 697040 901590 7546.6 1404900 2322500 1315800 993560 702430 709570 612010 973360 649060 843170 87588 1396400 2194000 1332100 1068500 742430 743650 601450 930800 1 1 1 1 1 1 1 1 1 1 1 716250 985430 7614.2 1619400 529820 436740 468880 733720 713960 672470 1061600 666890 921880 56334 1589600 506460 524550 486380 729180 727940 659300 1013300 2 2 1 2 2 2 2 2 2 2 2 328460000 246230000 82237000 4719 1858 4400 26066;26067;26068;26069 31289;31290;31291 31291 3 EQSILELGSLLAK Unmodified 1399.7922 0.79224564 73 O00231;O00231-2 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 0 0 0 0 By MS/MS By MS/MS 6.53 1.14 5 4 5 5 11 8 76.113 76.125 2;3 1.1973E-27 25844 20211116_3445_TMUAki_TMT10x_S_F6 238.13 193.82 113200000 183080000 2058000 180110000 115230000 141720000 130380000 77817000 76067000 91187000 121920000 105410000 170820000 10270000 183370000 110960000 145300000 129780000 82744000 81389000 88507000 116190000 18 18 10 18 18 18 18 18 18 18 18 56996000 90319000 1157500 88596000 49772000 83896000 56594000 39031000 39349000 46511000 59566000 53076000 84271000 5470600 90434000 47950000 84749000 56516000 42172000 41503000 45117000 56835000 10 10 5 10 10 10 10 10 10 10 10 56199000 92764000 900490 91510000 65458000 57821000 73788000 38785000 36718000 44676000 62355000 52331000 86554000 4799100 92940000 63006000 60554000 73264000 40571000 39886000 43390000 59358000 8 8 5 8 8 8 8 8 8 8 8 19035000000 8162500000 10873000000 4720 73 4401 26070;26071;26072;26073;26074;26075;26076;26077;26078;26079;26080;26081;26082;26083;26084;26085;26086;26087;26088 31292;31293;31294;31295;31296;31297;31298;31299;31300;31301;31302;31303;31304;31305;31306;31307;31308;31309;31310;31311;31312 31307 21 EQSLDALQTHYDELQAR Unmodified 2015.9548 0.95484731 1548 Q08378;Q08378-2;Q08378-4 GOLGA3 Golgin subfamily A member 3 yes no 0 0 0 0 By MS/MS By matching 3 0 2 1 1 51.427 51.196 3 5.0405E-09 16555 20211116_3430_TMUAki_TMT10x_P_F3 120.92 103.71 977310 1468900 6682.9 1811000 1709900 2314600 1361700 1432500 1438200 1248200 1293700 910020 1372000 97514 1830900 1631200 2307100 1401800 1495500 1454600 1226700 1252500 1 1 1 1 1 1 1 1 1 1 1 977310 1468900 6682.9 1811000 1709900 2314600 1361700 1432500 1438200 1248200 1293700 910020 1372000 97514 1830900 1631200 2307100 1401800 1495500 1454600 1226700 1252500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 177240000 77636000 99608000 4721 1548 4402 26089;26090 31313 31313 1 EQSQPCADNAVLSSGLTAAR Unmodified 2073.9749 0.97493082 736 P19784 CSNK2A2 Casein kinase II subunit alpha' yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 47.404 47.325 3 4.8492E-11 13763 20211116_3442_TMUAki_TMT10x_S_F4 112.33 105.44 5584300 9129400 26481 10124000 9608000 12001000 5909300 8381700 9669800 8939600 7891800 5199500 8522400 252130 10286000 9119500 12029000 6303900 8721300 9609700 8707900 7668000 4 4 2 4 4 4 4 4 4 4 4 4216800 6793100 0 7428400 8269500 10677000 4763200 6234400 7285900 6868300 5835100 3926000 6341100 114480 7581900 7839300 10577000 5093000 6581900 7250300 6681900 5673800 2 2 0 2 2 2 2 2 2 2 2 1367500 2336300 26481 2695100 1338500 1323400 1146100 2147300 2383900 2071200 2056700 1273500 2181300 137650 2703600 1280200 1451300 1211000 2139400 2359500 2026000 1994100 2 2 2 2 2 2 2 2 2 2 2 1156600000 986250000 170390000 4722 736 4403 26091;26092;26093;26094 31314;31315;31316;31317;31318 31318 5 EQSSEAAETGVSENEENPVR Unmodified 2160.9407 0.94071338 1875 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 0 0 0 0 By MS/MS 1 0 1 1 33.841 33.841 3 1.6443E-24 7541 20211116_3428_TMUAki_TMT10x_P_F1 166.21 148.71 46507 83933 1111 110970 192400 132250 77357 61102 86007 52431 91189 43311 78420 6934.5 111620 181650 131810 84749 65456 87303 51564 87806 1 1 1 1 1 1 1 1 1 1 1 46507 83933 1111 110970 192400 132250 77357 61102 86007 52431 91189 43311 78420 6934.5 111620 181650 131810 84749 65456 87303 51564 87806 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20421000 20421000 0 4723 1875 4404 26095 31319 31319 1 EQTADGVAVIPVLQR Unmodified 1594.8679 0.8678702 3157 Q9UKK9 NUDT5 ADP-sugar pyrophosphatase yes yes 0 0 0 0 By MS/MS 4 0 1 1 59.102 59.008 2 1.978E-23 18575 20211116_3442_TMUAki_TMT10x_S_F4 182.25 149.41 2143400 3535600 6919.8 3908100 2152800 2119800 1836000 3000000 3030800 2852200 3127800 1995700 3300500 184280 3933800 2056600 2289600 1915900 3001300 3034500 2791700 3014300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2143400 3535600 6919.8 3908100 2152800 2119800 1836000 3000000 3030800 2852200 3127800 1995700 3300500 184280 3933800 2056600 2289600 1915900 3001300 3034500 2791700 3014300 1 1 1 1 1 1 1 1 1 1 1 272730000 0 272730000 4724 3157 4405 26096 31320 31320 1 EQTLHTPVMMQTPQLTSTIMREPK 3 Oxidation (M) 2844.382 0.3819852 2192 Q8N3U4;Q8N3U4-2 STAG2 Cohesin subunit SA-2 yes no 0 0 3 1 By MS/MS 6 0 1 1 42.134 42.175 4 7.6467E-09 10296 20211116_3434_TMUAki_TMT10x_P_F6 101.41 92.325 186830 323280 0 293370 389170 680660 279200 610070 701020 479940 366100 173950 301540 16709 307190 370290 667930 302020 619950 682830 474090 363530 1 1 0 1 1 1 1 1 1 1 1 186830 323280 0 293370 389170 680660 279200 610070 701020 479940 366100 173950 301540 16709 307190 370290 667930 302020 619950 682830 474090 363530 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 176830000 176830000 0 4725 2192 4406 26097 31321 31321 2624;2625;2626 1 EQVANSAFVER Unmodified 1248.6099 0.6098646 553 P08238;Q58FF7 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 0 0 0 0 By MS/MS By MS/MS 3.59 2.12 4 4 4 4 2 1 1 2 13 9 34.814 34.817 2;3 3.6814E-23 8627 20211116_3428_TMUAki_TMT10x_P_F1 240.8 175.96 21090000 31581000 33843 38044000 58249000 38257000 24995000 23903000 30415000 20529000 30533000 19634000 29493000 1908900 38358000 54992000 38638000 27260000 24926000 30709000 20189000 29450000 23 23 8 23 23 23 23 23 23 23 23 15939000 23257000 30249 27804000 52899000 34187000 19233000 18126000 22701000 15970000 22359000 14839000 21718000 1540500 28139000 49856000 34072000 21376000 19175000 22930000 15686000 21580000 13 13 5 13 13 13 13 13 13 13 13 5150800 8324000 3594.2 10240000 5349800 4070600 5762600 5776800 7713900 4559200 8173200 4795400 7774300 368410 10219000 5136000 4565800 5884100 5750900 7778500 4503000 7870100 10 10 3 10 10 10 10 10 10 10 10 6700000000 4595300000 2104700000 4726 553 4407 26098;26099;26100;26101;26102;26103;26104;26105;26106;26107;26108;26109;26110;26111;26112;26113;26114;26115;26116;26117;26118;26119 31322;31323;31324;31325;31326;31327;31328;31329;31330;31331;31332;31333;31334;31335;31336;31337;31338;31339;31340;31341;31342;31343;31344;31345;31346;31347;31348 31322 27 EQVHQGGVELQQLEAGLQEAGEEDTR Unmodified 2849.3428 0.34275746 2228 Q8NBT2 SPC24 Kinetochore protein Spc24 yes yes 0 0 0 0 By MS/MS 1 0 1 1 64.211 64.211 3 1.403E-19 19821 20211116_3428_TMUAki_TMT10x_P_F1 131.78 120.04 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4727 2228 4408 26120 31349 31349 1 EQVHQGGVELQQLEAGLQEAGEEDTRLK Unmodified 3090.5218 0.52178446 2228 Q8NBT2 SPC24 Kinetochore protein Spc24 yes yes 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 67.109 66.968 4 2.5035E-65 20913 20211116_3428_TMUAki_TMT10x_P_F1 237.71 209.56 19209000 32674000 201930 30299000 21523000 28465000 21277000 19074000 18697000 17856000 23681000 17887000 30479000 1520800 31050000 20643000 28900000 21515000 19830000 19311000 17489000 22690000 7 7 6 7 7 7 7 7 7 7 7 12116000 19871000 22858 18340000 12582000 20910000 13289000 11892000 11255000 10557000 14456000 11281000 18536000 739960 18856000 12083000 20941000 13380000 12507000 11652000 10365000 13846000 3 3 2 3 3 3 3 3 3 3 3 7093600 12803000 179070 11959000 8941000 7554700 7987900 7181400 7442100 7299200 9225000 6606100 11943000 780870 12194000 8559900 7959500 8135400 7323900 7658200 7123900 8843800 4 4 4 4 4 4 4 4 4 4 4 5658400000 2233200000 3425200000 4728 2228 4409 26121;26122;26123 31350;31351;31352;31353;31354;31355;31356 31351 7 EQVIAALR Unmodified 898.52362 0.52361577 1227 P54727;P54727-2 RAD23B UV excision repair protein RAD23 homolog B yes no 0 0 0 0 By MS/MS 6 0 1 1 43.975 44.14 2 0.0063373 11415 20211116_3445_TMUAki_TMT10x_S_F6 86.205 35.013 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4729 1227 4410 26124 31357 31357 1 EQVNDLFSR Unmodified 1106.5356 0.53563702 1428 P78347;P78347-2;P78347-4;P78347-3;Q6EKJ0;Q86UP8;Q86UP8-3 GTF2I;GTF2IRD2B;GTF2IRD2 General transcription factor II-I;General transcription factor II-I repeat domain-containing protein 2B;General transcription factor II-I repeat domain-containing protein 2A yes no 0 0 0 0 By matching By MS/MS 3 0 2 1 1 47.531 47.344 2 0.0020951 16074 20211116_3441_TMUAki_TMT10x_S_F3 89.609 59.189 1251500 2183400 33888 2893700 1162700 1303100 1153900 2525800 3254600 2316000 2481600 1165600 2040000 134100 2878100 1116700 1453100 1236000 2500000 3191700 2270600 2417800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1251500 2183400 33888 2893700 1162700 1303100 1153900 2525800 3254600 2316000 2481600 1165600 2040000 134100 2878100 1116700 1453100 1236000 2500000 3191700 2270600 2417800 1 1 1 1 1 1 1 1 1 1 1 188990000 99728000 89258000 4730 1428 4411 26125;26126 31358 31358 1 EQVPGFTPR Unmodified 1029.5243 0.52434406 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 38.482 38.465 2 3.2821E-05 9234 20211116_3444_TMUAki_TMT10x_S_F5 119.21 48.296 4644900 7534400 75626 9257600 11903000 9230800 5982100 6692300 7911700 5465200 7563100 4325400 7036800 557230 9322100 11269000 9348400 6437200 6895600 7952000 5388200 7306600 5 5 5 5 5 5 5 5 5 5 5 2952100 4731100 37339 5890200 10367000 7754300 4334100 4230700 4994800 3499000 4818200 2749000 4419000 383400 5954900 9791100 7705400 4732200 4457400 5046200 3447400 4653400 3 3 3 3 3 3 3 3 3 3 3 1692800 2803300 38287 3367400 1535800 1476500 1648000 2461600 2916900 1966200 2744900 1576500 2617800 173830 3367200 1477700 1643000 1705100 2438200 2905800 1940700 2653200 2 2 2 2 2 2 2 2 2 2 2 604240000 391280000 212950000 4731 629 4412 26127;26128;26129;26130;26131 31359;31360;31361;31362;31363;31364 31364 6 EQVPSLGSNVACGLAYTDYHK Unmodified 2308.0794 0.079395893 8 A1L0T0 ILVBL Acetolactate synthase-like protein yes yes 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 59.639 60.129 3 4.234E-17 17957 20211116_3445_TMUAki_TMT10x_S_F6 129.32 112.64 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4732 8 4413 26132;26133;26134 31365;31366;31367 31367 3 EQVTNVGGAVVTGVTAVAQK Unmodified 1927.0375 0.037454724 967 P37840;P37840-2;P37840-3 SNCA Alpha-synuclein yes no 0 0 0 0 By MS/MS 8 0 1 1 66.384 66.524 3 0.0063949 20841 20211116_3436_TMUAki_TMT10x_P_F8 49.528 31.784 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4733 967 4414 26135 31368 31368 1 EQYAQEHGLNFQR Unmodified 1618.7488 0.7488177 1774 Q15126 PMVK Phosphomevalonate kinase yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 1.12 1 1 1 1 2 2 35.7 35.633 3 5.6537E-12 8667 20211116_3431_TMUAki_TMT10x_P_F4 152 132.32 1013700 1620700 28667 1913700 2285100 2279900 1311400 1426600 1525600 1198300 1472000 944100 1513300 128570 1937100 2168300 2280800 1387800 1486700 1540800 1179700 1421700 2 2 2 2 2 2 2 2 2 2 2 712870 1124300 15189 1359600 1974100 1970400 989010 1008400 1076000 853710 1002600 663870 1050000 90922 1379500 1869000 1948100 1057400 1069200 1088200 840150 969490 1 1 1 1 1 1 1 1 1 1 1 300860 496360 13477 554120 311030 309420 322430 418270 449690 344600 469380 280230 463370 37646 557560 299340 332750 330400 417570 452610 339590 452190 1 1 1 1 1 1 1 1 1 1 1 162110000 126820000 35290000 4734 1774 4415 26136;26137;26138;26139 31369;31370 31369 2 EQYSDAPEEIRDAR Unmodified 1677.7594 0.75944196 2242 Q8NEJ9;Q8NEJ9-2 NGDN Neuroguidin yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 34.494 34.383 3 2.3383E-09 7756 20211116_3428_TMUAki_TMT10x_P_F1 131.4 103.31 762500 921650 0 1509000 1996300 1608900 969060 879840 894520 698460 1093500 709930 862190 76433 1499400 1888000 1616500 1034400 925930 920340 689630 1048700 2 2 0 2 2 2 2 2 2 2 2 762500 921650 0 1509000 1996300 1608900 969060 879840 894520 698460 1093500 709930 862190 76433 1499400 1888000 1616500 1034400 925930 920340 689630 1048700 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 177230000 177230000 0 4735 2242 4416 26140;26141;26142 31371;31372;31373 31371 3 ERALEDAQAVNEQLSSER Unmodified 2043.9821 0.98212469 3207 Q9UPN4;Q9UPN4-2;Q9UPN4-3 CEP131 Centrosomal protein of 131 kDa yes no 0 0 0 1 By MS/MS 3 0 1 1 44.733 44.767 3 0.00021188 13875 20211116_3430_TMUAki_TMT10x_P_F3 71.148 55.893 572710 775420 0 1015800 1118600 1294800 873450 679720 808850 648770 739980 533080 724450 34702 1023500 1065100 1288100 896790 721210 823250 634900 715960 1 1 0 1 1 1 1 1 1 1 1 572710 775420 0 1015800 1118600 1294800 873450 679720 808850 648770 739980 533080 724450 34702 1023500 1065100 1288100 896790 721210 823250 634900 715960 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 64259000 64259000 0 4736 3207 4417 26143 31374 31374 1 ERAPQFQESVGSFR Unmodified 1636.7958 0.79576789 1948 Q5VT52;Q5VT52-2;Q5VT52-3 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 5.2 0.748 1 2 2 4 1 38.873 38.923 3 5.5698E-51 10332 20211116_3433_TMUAki_TMT10x_P_F5 278.85 247.17 5049200 7703400 189440 10328000 9684900 8483700 6579400 6692000 8359300 5726400 8674400 4702700 7197900 656960 10323000 9219600 8716100 6891200 6865500 8437400 5632500 8358200 4 4 3 4 4 4 4 4 4 4 4 2687400 4224500 2306.3 5007000 7475300 6334800 4180300 3023300 3718000 2722000 3942400 2502200 3944900 288880 5072500 7084700 6297100 4398200 3232000 3810600 2670800 3796100 3 3 2 3 3 3 3 3 3 3 3 2361800 3478900 187140 5320900 2209700 2148900 2399100 3668700 4641300 3004500 4732100 2200500 3253100 368080 5250600 2134800 2419000 2493000 3633500 4626800 2961700 4562100 1 1 1 1 1 1 1 1 1 1 1 639320000 451690000 187630000 4737 1948 4418 26144;26145;26146;26147;26148 31375;31376;31377;31378;31379 31376 5 ERCPACFVGTITGDR Unmodified 1737.7927 0.79267312 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 1 By MS/MS 6 0 1 1 42.767 42.933 3 1.0262E-33 10935 20211116_3445_TMUAki_TMT10x_S_F6 203.06 184.23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4738 157 4419 26149 31380 31380 1 ERCPACFVGTITGDRR Unmodified 1893.8938 0.89378415 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 2 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 32.622 32.636 4 1.0851E-05 4136 20211116_3436_TMUAki_TMT10x_P_F8 99.747 78.213 5999500 10836000 102530 12152000 14341000 14272000 8585900 7770700 7951200 7545400 10194000 5586100 10116000 610370 12336000 13606000 14262000 8990400 8222100 8196300 7378500 9764000 3 3 1 3 3 3 3 3 3 3 3 4764200 8430000 102530 9746200 13119000 13295000 7547700 6240600 6475700 5987000 8023500 4435900 7871000 509740 9902900 12439000 13167000 7914100 6693400 6689700 5857600 7692000 2 2 1 2 2 2 2 2 2 2 2 1235300 2406400 0 2405800 1222000 976720 1038300 1530200 1475500 1558500 2170200 1150200 2245500 100630 2433000 1167000 1095600 1076300 1528700 1506600 1520900 2072000 1 1 0 1 1 1 1 1 1 1 1 1155700000 1027700000 127970000 4739 157 4420 26150;26151;26152 31381;31382;31383 31382 3 ERDCESVCFIGRPWR Unmodified 1965.8938 0.89378415 1564 Q12789;Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 yes no 0 0 0 2 By matching By MS/MS 7 0 2 1 1 42.401 42.918 4 0.03158 12954 20211116_3446_TMUAki_TMT10x_S_F7 47.916 36.646 389310 734530 0 799140 355510 281300 314940 570610 468090 431100 607840 362470 685640 30556 802950 339780 325010 326320 561380 474460 426780 582030 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 389310 734530 0 799140 355510 281300 314940 570610 468090 431100 607840 362470 685640 30556 802950 339780 325010 326320 561380 474460 426780 582030 1 1 0 1 1 1 1 1 1 1 1 151650000 125470000 26185000 4740 1564 4421 26153;26154 31384 31384 1 ERDFTSLENTVEER Unmodified 1723.8013 0.80130678 1536 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 1 By MS/MS By MS/MS 1.88 0.781 3 3 2 6 2 46.212 46.046 2;3 2.408E-49 12437 20211116_3428_TMUAki_TMT10x_P_F1 289.44 239.35 30932000 50388000 247190 52263000 49194000 45850000 38029000 43277000 44286000 39004000 45581000 28801000 47025000 2893700 53088000 46893000 47047000 39351000 44003000 44825000 38270000 43930000 8 8 2 8 8 8 8 8 8 8 8 10448000 16775000 2172.3 18022000 23328000 24249000 13708000 14760000 14786000 12789000 14659000 9726900 15657000 900640 18390000 22117000 24106000 14441000 15427000 14991000 12572000 14145000 5 5 1 5 5 5 5 5 5 5 5 20484000 33613000 245020 34241000 25866000 21601000 24321000 28517000 29499000 26215000 30922000 19075000 31367000 1993000 34698000 24777000 22941000 24911000 28576000 29834000 25698000 29785000 3 3 1 3 3 3 3 3 3 3 3 3186700000 2418400000 768340000 4741 1536 4422 26155;26156;26157;26158;26159;26160;26161;26162 31385;31386;31387;31388;31389;31390;31391;31392;31393 31386 9 ERDFYFGK Unmodified 1060.4978 0.49779495 1824;1816 Q15691;Q15555;Q15555-4;Q15555-5;Q15555-3 MAPRE1;MAPRE2 Microtubule-associated protein RP/EB family member 1;Microtubule-associated protein RP/EB family member 2 no no 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 44.019 44.143 3 0.00076703 11162 20211116_3444_TMUAki_TMT10x_S_F5 121.73 102.49 18818000 28355000 152220 41395000 53590000 34498000 21016000 24076000 29071000 21727000 29357000 17521000 26507000 2049200 41205000 50566000 35335000 23270000 24934000 29233000 21317000 28311000 6 6 4 6 6 6 6 6 6 6 6 11618000 17137000 93102 24291000 47235000 29745000 15724000 14934000 17612000 13532000 17847000 10817000 16018000 1426500 24357000 44497000 29633000 17655000 15889000 17843000 13274000 17209000 4 4 3 4 4 4 4 4 4 4 4 7199700 11218000 59119 17103000 6354600 4753000 5292700 9141600 11459000 8195400 11510000 6703900 10489000 622760 16848000 6068800 5702500 5615000 9044800 11390000 8043000 11102000 2 2 1 2 2 2 2 2 2 2 2 2751400000 1635300000 1116000000 4742 1824;1816 4423 26163;26164;26165;26166 31394;31395;31396;31397;31398;31399 31398 6 ERDLELEMGDDYILDLQK Oxidation (M) 2210.0413 0.041279052 2735 Q9BZE4;Q9BZE4-3;Q9BZE4-2 GTPBP4 Nucleolar GTP-binding protein 1 yes no 0 0 1 1 By MS/MS By MS/MS 1 0 2 1 1 67.807 67.704 3 4.7588E-08 21262 20211116_3428_TMUAki_TMT10x_P_F1 108.75 84.714 14185000 25731000 246630 21883000 16792000 25526000 18136000 20717000 20787000 21486000 20954000 13209000 23995000 1440900 22651000 16149000 25672000 18408000 21330000 21037000 20952000 20208000 5 5 4 5 5 5 5 5 5 5 5 6558000 11701000 92055 10079000 7141700 15709000 8969400 9871000 9954600 10420000 9690500 6106800 10912000 636180 10481000 6899200 15525000 9033000 10347000 10075000 10154000 9356200 2 2 1 2 2 2 2 2 2 2 2 7627000 14030000 154580 11804000 9650200 9817500 9166300 10846000 10832000 11066000 11263000 7102700 13083000 804730 12169000 9250300 10147000 9374600 10983000 10962000 10799000 10852000 3 3 3 3 3 3 3 3 3 3 3 1466400000 606850000 859560000 4743 2735 4424 26167;26168 31400;31401;31402;31403;31404 31401 2924 5 ERDQGGFGDRNEYGSR Unmodified 1841.8041 0.80410074 2380 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 0 2 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 27.096 26.835 4 7.2708E-09 6189 20211116_3429_TMUAki_TMT10x_P_F2 121.34 106.93 99329 175610 2338.3 184860 158010 128630 96363 61835 119550 88382 129030 92486 163900 9218 187100 149970 133010 101690 67035 120940 85225 124170 2 2 1 2 2 2 2 2 2 2 2 41137 66277 0 76695 90549 72201 43361 29503 49932 34281 51184 38286 61882 2084.5 77439 85505 72871 46654 32295 50554 33284 49336 1 1 0 1 1 1 1 1 1 1 1 58192 109330 2338.3 108170 67460 56431 53002 32332 69615 54101 77842 54200 102010 7133.6 109660 64462 60138 55033 34741 70386 51941 74836 1 1 1 1 1 1 1 1 1 1 1 9925700 4899300 5026400 4744 2380 4425 26169;26170 31405;31406 31405 2 ERDVILR Unmodified 899.51886 0.51886475 891 P31930 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 29.96 29.795 3 0.0020056 9008 20211116_3441_TMUAki_TMT10x_S_F3 116.73 55.966 602750 940020 29355 963500 687670 719780 728040 493200 538270 532590 715490 561440 877230 78520 977630 662170 743210 730500 514070 562190 518530 684720 2 2 2 2 2 2 2 2 2 2 2 316160 509240 22561 494000 390190 498020 359470 300870 308930 329530 405970 294540 475120 48275 505100 374730 502670 364670 316710 319940 320660 388620 1 1 1 1 1 1 1 1 1 1 1 286590 430780 6794.2 469500 297480 221770 368570 192330 229340 203060 309530 266890 402110 30245 472530 287430 240540 365830 197360 242250 197880 296110 1 1 1 1 1 1 1 1 1 1 1 32474000 13364000 19109000 4745 891 4426 26171;26172;26173 31407;31408 31408 2 ERDVIMR Unmodified 917.47529 0.47528537 1277;1697 P60842;P60842-2;Q14240;Q14240-2 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 0 0 0 1 By MS/MS By matching 2.5 0.5 1 1 1 1 28.758 28.505 3 0.070826 6940 20211116_3429_TMUAki_TMT10x_P_F2 46.813 30.659 368420 552050 21372 564460 414250 544860 389620 197250 229730 258970 460180 343200 515170 51104 574670 397880 548470 391540 219940 248880 250380 436780 1 1 1 1 1 1 1 1 1 1 1 368420 552050 21372 564460 414250 544860 389620 197250 229730 258970 460180 343200 515170 51104 574670 397880 548470 391540 219940 248880 250380 436780 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37280000 6757200 30523000 4746 1277;1697 4427 26174;26175 31409 31409 1 EREEATYLLEQQR Unmodified 1663.8166 0.81656291 1560 Q12756;Q12756-3;Q12756-2 KIF1A Kinesin-like protein KIF1A yes no 0 0 0 1 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 39.874 39.754 3 4.5352E-36 11446 20211116_3429_TMUAki_TMT10x_P_F2 263.72 226 1809400 2804000 0 3418400 2585700 2386200 1870600 1976400 2272300 1882600 2453700 1684500 2618700 111590 3428500 2459300 2485400 1947300 2027300 2300500 1842500 2361400 4 4 0 4 4 4 4 4 4 4 4 645340 961430 0 1259200 1599900 1535200 851940 754610 883800 690720 910080 600800 898230 57175 1267700 1514600 1529400 904250 804720 898650 677220 877110 1 1 0 1 1 1 1 1 1 1 1 1164100 1842600 0 2159200 985860 850950 1018700 1221700 1388500 1191900 1543600 1083700 1720500 54419 2160800 944760 955920 1043000 1222600 1401800 1165300 1484300 3 3 0 3 3 3 3 3 3 3 3 375940000 271430000 104510000 4747 1560 4428 26176;26177;26178;26179;26180 31410;31411;31412;31413 31410 4 EREEIEK Unmodified 931.46108 0.4610751 1634 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein yes yes 0 0 0 1 By MS/MS 2 0 1 1 28.563 28.327 3 0.0081942 6904 20211116_3429_TMUAki_TMT10x_P_F2 92.838 18.373 191580 273580 462.53 239520 193020 296870 196100 154620 171980 140800 208670 178390 255150 16335 247620 185180 295700 198000 163980 177320 138090 200160 1 1 1 1 1 1 1 1 1 1 1 191580 273580 462.53 239520 193020 296870 196100 154620 171980 140800 208670 178390 255150 16335 247620 185180 295700 198000 163980 177320 138090 200160 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9752000 9752000 0 4748 1634 4429 26181 31414 31414 1 EREELAQQYEAILR Unmodified 1746.8901 0.89006221 2051 Q7L0J3;Q7L0J3-2 SV2A Synaptic vesicle glycoprotein 2A yes no 0 0 0 1 By MS/MS By matching 2.5 0.5 1 1 1 1 52.261 51.951 3 2.1578E-23 16368 20211116_3429_TMUAki_TMT10x_P_F2 184.22 148.92 3984900 6644600 101970 7224000 6643800 9369200 5479400 5834200 5693400 5294400 5943100 3711100 6202300 462650 7360800 6347300 9332900 5625500 6094000 5791600 5193000 5725400 2 2 2 2 2 2 2 2 2 2 2 3984900 6644600 101970 7224000 6643800 9369200 5479400 5834200 5693400 5294400 5943100 3711100 6202300 462650 7360800 6347300 9332900 5625500 6094000 5791600 5193000 5725400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 335660000 223290000 112380000 4749 2051 4430 26182;26183 31415;31416 31415 2 EREGPSLGPPPVASALSR Unmodified 1818.9588 0.95881047 310 O75150;O75150-3;O75150-4 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 0 0 0 1 By MS/MS 5.5 0.5 1 1 2 44.479 44.644 3 3.8708E-10 11589 20211116_3445_TMUAki_TMT10x_S_F6 121.47 86.94 1669200 2742500 5165.3 3136800 1524100 1436200 1348800 2544100 2480900 2135100 2390800 1554300 2560500 140990 3146700 1457200 1592900 1412300 2518500 2471200 2102100 2309100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1669200 2742500 5165.3 3136800 1524100 1436200 1348800 2544100 2480900 2135100 2390800 1554300 2560500 140990 3146700 1457200 1592900 1412300 2518500 2471200 2102100 2309100 2 2 1 2 2 2 2 2 2 2 2 94731000 0 94731000 4750 310 4431 26184;26185 31417;31418;31419 31418 3 EREHHAEAAQFQEDVNADPEVQR Unmodified 2704.2226 0.22258275 2091 Q7Z6J9 TSEN54 tRNA-splicing endonuclease subunit Sen54 yes yes 0 0 0 1 By MS/MS 1 0 1 1 32.115 32.115 5 2.4294E-07 6765 20211116_3428_TMUAki_TMT10x_P_F1 91.114 80.963 79323 134880 1190.6 170800 236840 170260 133260 94262 95870 77542 123430 73866 125990 9892.1 171700 224560 171780 139430 99174 100150 76421 118210 1 1 1 1 1 1 1 1 1 1 1 79323 134880 1190.6 170800 236840 170260 133260 94262 95870 77542 123430 73866 125990 9892.1 171700 224560 171780 139430 99174 100150 76421 118210 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12665000 12665000 0 4751 2091 4432 26186 31420 31420 1 EREHLEMELEK Unmodified 1441.6871 0.68712864 2107 Q86UP2;Q86UP2-3;Q86UP2-4;Q86UP2-2 KTN1 Kinectin yes no 0 0 0 1 By MS/MS 3 0 1 1 36.991 36.744 4 0.0071192 11724 20211116_3441_TMUAki_TMT10x_S_F3 62.924 31.696 320870 479930 2056 566890 303530 229010 303520 273050 281300 246660 372810 298770 448150 28275 567130 291170 255130 307190 274610 290390 241990 356800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 320870 479930 2056 566890 303530 229010 303520 273050 281300 246660 372810 298770 448150 28275 567130 291170 255130 307190 274610 290390 241990 356800 1 1 1 1 1 1 1 1 1 1 1 16968000 0 16968000 4752 2107 4433 26187 31421 31421 1 ERELQHAALGGTATR Unmodified 1608.8332 0.83321603 138 O14828;O14828-2 SCAMP3 Secretory carrier-associated membrane protein 3 yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 29.951 29.937 3 4.7647E-05 6379 20211116_3431_TMUAki_TMT10x_P_F4 94.569 70.82 134580 210070 6929.9 225700 342890 313520 170230 167480 171820 145240 211740 125360 196080 20534 230460 324850 310690 181750 176980 176150 142760 203030 1 1 1 1 1 1 1 1 1 1 1 134580 210070 6929.9 225700 342890 313520 170230 167480 171820 145240 211740 125360 196080 20534 230460 324850 310690 181750 176980 176150 142760 203030 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28053000 28053000 0 4753 138 4434 26188;26189 31422 31422 1 EREPDGELLVHRF Unmodified 1595.8056 0.80560429 1975 Q6GQQ9 OTUD7B OTU domain-containing protein 7B yes yes 0 0 0 2 By matching By MS/MS 2.33 0.471 2 1 1 2 39.223 39.069 4 0.10355 9648 20211116_3440_TMUAki_TMT10x_S_F2 38.933 23.393 1223500 2023800 12649 1985900 1410400 1039400 1248500 1644700 1768300 1513000 1814200 1139300 1888300 115840 2014500 1349000 1130800 1291000 1637800 1777800 1483100 1748700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1223500 2023800 12649 1985900 1410400 1039400 1248500 1644700 1768300 1513000 1814200 1139300 1888300 115840 2014500 1349000 1130800 1291000 1637800 1777800 1483100 1748700 2 2 2 2 2 2 2 2 2 2 2 129540000 88650000 40888000 4754 1975 4435 26190;26191;26192 31423 31423 1 EREPVELAR Unmodified 1097.5829 0.58292157 2017 Q6SZW1;Q6SZW1-2 SARM1 Sterile alpha and TIR motif-containing protein 1 yes no 0 0 0 1 By MS/MS 2 0 1 1 29.539 29.305 3 0.0055138 7293 20211116_3429_TMUAki_TMT10x_P_F2 69.276 53.836 202680 316570 1330.6 295080 305090 423700 253810 216110 237780 287750 246950 188720 295310 19478 304470 291330 419040 259630 232350 242930 278080 237940 1 1 1 1 1 1 1 1 1 1 1 202680 316570 1330.6 295080 305090 423700 253810 216110 237780 287750 246950 188720 295310 19478 304470 291330 419040 259630 232350 242930 278080 237940 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6580500 6580500 0 4755 2017 4436 26193 31424 31424 1 ERESAEQSSGPGPSLRPQNSTTWR Unmodified 2656.259 0.25896825 1077 P48634;P48634-2;P48634-3;P48634-4 PRRC2A Protein PRRC2A yes no 0 0 0 2 By MS/MS 5 0 1 1 32.366 32.306 4 4.0282E-115 7611 20211116_3433_TMUAki_TMT10x_P_F5 316.45 289.71 158270 243050 0 432380 750040 422210 347490 102070 135100 101070 267840 147310 227500 15190 427580 708650 423550 366950 119910 151450 98756 254270 1 1 0 1 1 1 1 1 1 1 1 158270 243050 0 432380 750040 422210 347490 102070 135100 101070 267840 147310 227500 15190 427580 708650 423550 366950 119910 151450 98756 254270 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100850000 100850000 0 4756 1077 4437 26194 31425 31425 1 ERESLQQMAEVTR Oxidation (M) 1591.7624 0.76241885 666 P14314;P14314-2 PRKCSH Glucosidase 2 subunit beta yes no 0 0 1 1 By MS/MS By MS/MS 2.57 1.4 2 2 1 1 1 3 4 29.315 29.279 3 1.7302E-11 7223 20211116_3429_TMUAki_TMT10x_P_F2 144.16 114.52 605130 891900 4638.8 1189100 1043100 841860 596320 463670 533420 483200 719240 563390 833350 46810 1186900 988650 870550 626280 491100 552010 471120 688080 6 6 1 6 6 6 6 6 6 6 6 413380 636620 4638.8 837280 917300 714060 456330 326870 376390 341720 507580 384890 594790 35889 838150 867900 726330 484500 352320 391070 333130 485580 4 4 1 4 4 4 4 4 4 4 4 191740 255270 0 351810 125830 127800 139980 136800 157030 141480 211670 178500 238560 10921 348740 120750 144210 141780 138780 160940 137980 202500 2 2 0 2 2 2 2 2 2 2 2 124410000 87010000 37396000 4757 666 4438 26195;26196;26197;26198;26199;26200;26201 31426;31427;31428;31429;31430;31431 31428 728 6 ERESLQQMAEVTR Unmodified 1575.7675 0.76750423 666 P14314;P14314-2 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 37.434 37.28 3 2.7543E-25 11904 20211116_3441_TMUAki_TMT10x_S_F3 219.52 191.83 3485000 5589300 66329 7975500 8215800 6070100 4213200 2916800 3189400 2800400 4930400 3245300 5224300 403910 7939200 7780300 6230500 4451200 3121300 3351200 2739800 4702300 4 4 3 4 4 4 4 4 4 4 4 2746500 4238100 66329 6039700 7658200 5633700 3717400 2367100 2598200 2241500 3786200 2557700 3961300 358310 6028100 7248000 5690900 3942200 2567800 2734400 2194400 3615700 3 3 3 3 3 3 3 3 3 3 3 738550 1351200 0 1935800 557610 436350 495780 549690 591120 558920 1144200 687560 1263000 45599 1911100 532260 539560 509080 553450 616820 545490 1086600 1 1 0 1 1 1 1 1 1 1 1 333780000 214790000 118990000 4758 666 4438 26202;26203;26204 31432;31433;31434;31435 31435 4 EREVLQLQEEVK Unmodified 1498.7991 0.79912193 2731 Q9BYN8 MRPS26 28S ribosomal protein S26, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.707 1 2 1 1 3 47.543 47.473 3 1.1939E-10 13275 20211116_3440_TMUAki_TMT10x_S_F2 160.18 121.17 5065100 8321600 54136 9623600 5899500 5684600 5034300 5367100 5440400 4891600 6636600 4716500 7769800 474990 9666800 5637800 6026900 5164300 5458700 5559400 4797000 6365100 3 3 2 3 3 3 3 3 3 3 3 1551100 2543400 52572 2771500 2486800 2780600 1811300 1355000 1444900 1397400 1916300 1444700 2374100 190700 2811400 2370700 2800100 1861300 1450800 1502700 1363000 1834000 1 1 1 1 1 1 1 1 1 1 1 3514000 5778200 1564.3 6852100 3412700 2903900 3223000 4012200 3995500 3494300 4720400 3271800 5395700 284290 6855400 3267100 3226800 3303100 4007900 4056700 3434000 4531100 2 2 1 2 2 2 2 2 2 2 2 441910000 139190000 302710000 4759 2731 4439 26205;26206;26207;26208 31436;31437;31438 31437 3 ERFDPTQFQDCIIQGLTETGTDLEAVAK Unmodified 3181.5238 0.52375829 2052 Q7L1Q6;Q7L1Q6-2;Q7L1Q6-4;Q7L1Q6-3 BZW1 Basic leucine zipper and W2 domain-containing protein 1 yes no 0 0 0 1 By MS/MS 4 0 1 1 80.951 80.959 4 2.2803E-06 27135 20211116_3431_TMUAki_TMT10x_P_F4 79.388 67.535 1372500 2444000 0 2198000 1182400 2015700 1594200 858840 1061600 1228400 1549200 1277500 2279600 58683 2257000 1140700 2038700 1579100 942650 1120600 1184500 1479400 1 1 0 1 1 1 1 1 1 1 1 1372500 2444000 0 2198000 1182400 2015700 1594200 858840 1061600 1228400 1549200 1277500 2279600 58683 2257000 1140700 2038700 1579100 942650 1120600 1184500 1479400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 952420000 952420000 0 4760 2052 4440 26209 31439 31439 1 ERFGIVTSSAGTGTTEDTEAK Unmodified 2156.0233 0.023320802 1445 P82979 SARNP SAP domain-containing ribonucleoprotein yes yes 0 0 0 1 By MS/MS 4 0 1 1 41.121 41.184 3 4.9949E-32 10846 20211116_3431_TMUAki_TMT10x_P_F4 168.68 150.98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4761 1445 4441 26210 31440 31440 1 ERFLVEPQEDTR Unmodified 1517.7474 0.74742071 1163 P51784 USP11 Ubiquitin carboxyl-terminal hydrolase 11 yes yes 0 0 0 1 By MS/MS 2 0 1 1 36.443 36.542 3 0.017028 8792 20211116_3440_TMUAki_TMT10x_S_F2 57.034 43.834 114310 197580 1448.2 206910 122200 205970 146930 215630 247580 235210 202640 106450 184400 10937 210410 117880 210110 150860 219340 245870 228920 196870 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 114310 197580 1448.2 206910 122200 205970 146930 215630 247580 235210 202640 106450 184400 10937 210410 117880 210110 150860 219340 245870 228920 196870 1 1 1 1 1 1 1 1 1 1 1 4245800 0 4245800 4762 1163 4442 26211 31441 31441 1 ERGDQTVLILHAK Unmodified 1478.8205 0.82052608 1528 Q06330;Q06330-5;Q06330-4;Q06330-6;Q06330-7 RBPJ Recombining binding protein suppressor of hairless yes no 0 0 0 1 By matching By MS/MS 4.67 0.471 1 2 2 1 37.624 37.68 4 0.0022632 8547 20211116_3444_TMUAki_TMT10x_S_F5 70.628 51.357 712330 1093300 10856 1301300 701820 628950 720750 867750 818950 746770 967390 663330 1020900 69027 1302800 674070 687570 733140 866600 834110 734320 928610 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 712330 1093300 10856 1301300 701820 628950 720750 867750 818950 746770 967390 663330 1020900 69027 1302800 674070 687570 733140 866600 834110 734320 928610 1 1 1 1 1 1 1 1 1 1 1 349420000 224380000 125040000 4763 1528 4443 26212;26213;26214 31442 31442 1 ERGHTVTEPIQPLEPELPGEGQPEAR Unmodified 2865.4257 0.42569923 191 O15446;O15446-2 CD3EAP DNA-directed RNA polymerase I subunit RPA34 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 45.336 45.175 4 2.4542E-23 15226 20211116_3441_TMUAki_TMT10x_S_F3 147.22 132.26 3247300 5299800 21265 5908300 3701400 4358200 2789900 4612900 4819900 3999300 4510900 3023500 4947500 188490 5961300 3525700 4541200 2940400 4658900 4803600 3931200 4361000 6 6 3 6 6 6 6 6 6 6 6 1338200 1952700 0 2100000 2441700 2962600 1689200 1569700 1673700 1478000 1656900 1245900 1822700 31604 2144900 2321300 2933600 1752300 1663500 1702800 1447200 1598900 2 2 0 2 2 2 2 2 2 2 2 1909100 3347000 21265 3808300 1259700 1395700 1100700 3043200 3146200 2521300 2854000 1777600 3124900 156890 3816400 1204400 1607600 1188100 2995300 3100900 2484000 2762200 4 4 3 4 4 4 4 4 4 4 4 989910000 564630000 425280000 4764 191 4444 26215;26216;26217;26218 31443;31444;31445;31446;31447;31448 31448 6 ERGLGGEVPGSHQGPDPYR Unmodified 2006.9559 0.95585036 2023 Q6UW68 TMEM205 Transmembrane protein 205 yes yes 0 0 0 1 By MS/MS 4 0 1 1 31.917 31.946 4 3.1695E-07 7131 20211116_3431_TMUAki_TMT10x_P_F4 101.49 77.662 327330 498250 2511.9 552840 827520 587430 388620 311620 333910 290810 414070 304790 465120 36484 560650 782580 590100 415450 330130 344940 284880 396960 1 1 1 1 1 1 1 1 1 1 1 327330 498250 2511.9 552840 827520 587430 388620 311620 333910 290810 414070 304790 465120 36484 560650 782580 590100 415450 330130 344940 284880 396960 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25741000 25741000 0 4765 2023 4445 26219 31449 31449 1 ERHPGSFDVVHVK Unmodified 1505.7739 0.77391024 1362 P62701 RPS4X 40S ribosomal protein S4, X isoform no no 0 0 0 1 By MS/MS 4.6 0.49 2 3 5 32.725 32.699 3;4;5 1.0835E-06 7709 20211116_3433_TMUAki_TMT10x_P_F5 118.51 95.272 2179000 3405600 29275 4153400 7182100 5730300 2671600 2521500 3185100 2346500 3060300 2029000 3180600 273880 4207900 6774600 5668200 2961600 2720400 3213400 2298900 2956000 4 4 3 4 4 4 4 4 4 4 4 2179000 3405600 29275 4153400 7182100 5730300 2671600 2521500 3185100 2346500 3060300 2029000 3180600 273880 4207900 6774600 5668200 2961600 2720400 3213400 2298900 2956000 4 4 3 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 572730000 572730000 0 4766 1362 4446 26220;26221;26222;26223;26224 31450;31451;31452;31453 31452 4 ERIQNAGGSVMIQR Oxidation (M) 1573.7995 0.79947306 944;353 O75688;O75688-2;O75688-5;O75688-4;P35813;P35813-3;P35813-2 PPM1B;PPM1A Protein phosphatase 1B;Protein phosphatase 1A no no 0 0 1 1 By MS/MS 5 0 1 1 30.622 30.558 3 0.030337 6927 20211116_3433_TMUAki_TMT10x_P_F5 46.41 22.029 260600 444480 0 367270 480670 492870 285010 224450 294980 231110 316120 242630 414460 23378 382010 455880 488330 299640 241960 300410 225440 304290 1 1 0 1 1 1 1 1 1 1 1 260600 444480 0 367270 480670 492870 285010 224450 294980 231110 316120 242630 414460 23378 382010 455880 488330 299640 241960 300410 225440 304290 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19894000 19894000 0 4767 353;944 4447 26225 31454 31454 270 1 ERLDGENIYIR Unmodified 1376.7048 0.70482762 617 P11171;P11171-2;P11171-4;P11171-3;P11171-7 EPB41 Protein 4.1 yes no 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 1 2 39.408 39.148 3 2.2033E-07 12684 20211116_3441_TMUAki_TMT10x_S_F3 109.16 86.241 523130 844820 8523.7 1043500 1501200 1437000 895680 1009200 871700 771820 909860 487150 789050 65014 1056300 1424700 1430000 939440 1040500 889210 763570 876530 1 1 1 1 1 1 1 1 1 1 1 523130 844820 8523.7 1043500 1501200 1437000 895680 1009200 871700 771820 909860 487150 789050 65014 1056300 1424700 1430000 939440 1040500 889210 763570 876530 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 41032000 41032000 0 4768 617 4448 26226;26227;26228 31455;31456;31457 31456 3 ERLDQPMTEIVSR Oxidation (M) 1588.7879 0.78790532 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 1 1 By MS/MS By MS/MS 2.57 1.18 2 1 2 2 4 3 33.488 33.433 3 5.7951E-06 9261 20211116_3430_TMUAki_TMT10x_P_F3 103.88 78.438 2094700 3350800 40638 4164200 4251200 3427800 2544300 2206500 2866900 1847100 3027900 1950600 3129700 239470 4179700 4035600 3510000 2680000 2294300 2908100 1818800 2916000 7 7 6 7 7 7 7 7 7 7 7 1409600 2219600 19434 2673700 3667800 2947600 1913600 1511000 1867200 1219800 2001600 1312600 2072800 164340 2699700 3473700 2953700 2031300 1600100 1906300 1203300 1926700 4 4 3 4 4 4 4 4 4 4 4 685010 1131200 21204 1490400 583390 480150 630740 695510 999670 627400 1026400 637970 1056900 75130 1480000 561860 556300 648740 694240 1001800 615550 989300 3 3 3 3 3 3 3 3 3 3 3 553910000 373250000 180660000 4769 769 4449 26229;26230;26231;26232;26233;26234;26235 31458;31459;31460;31461;31462;31463;31464 31460 893 7 ERLDQPMTEIVSR Unmodified 1572.793 0.7929907 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 1 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 42.946 42.906 3 9.9389E-15 14227 20211116_3441_TMUAki_TMT10x_S_F3 169.3 148.71 10978000 18193000 5191.3 22267000 18063000 16656000 11301000 11681000 12940000 10648000 14168000 10221000 16991000 905210 22344000 17143000 17202000 11867000 12097000 13136000 10442000 13629000 6 6 1 6 6 6 6 6 6 6 6 6699400 11074000 0 13244000 14649000 13921000 8393700 6955300 8480900 6339500 8562800 6237300 10342000 604290 13368000 13885000 13983000 8843900 7404800 8627000 6216900 8257700 3 3 0 3 3 3 3 3 3 3 3 4278600 7118800 5191.3 9022500 3413900 2735500 2907000 4725900 4459400 4309000 5605200 3983400 6649700 300920 8976000 3257900 3219300 3023300 4692100 4509400 4225500 5371700 3 3 1 3 3 3 3 3 3 3 3 1388700000 810680000 578020000 4770 769 4449 26236;26237;26238;26239;26240;26241 31465;31466;31467;31468;31469;31470 31469 6 ERLEDLNFPEIK Unmodified 1501.7777 0.77765821 3287 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 3 1 59.838 59.953 3 2.5823E-07 18507 20211116_3431_TMUAki_TMT10x_P_F4 128.21 85.658 6655600 11743000 99643 13470000 8916500 9958500 7849400 8197400 8018100 8095600 8542300 6197800 10964000 676320 13567000 8528700 10322000 8023000 8420400 8168200 7910800 8224300 2 2 2 2 2 2 2 2 2 2 2 3107100 5186200 35084 6177800 4773200 6835100 4284400 3426800 3669300 3712800 3811400 2893300 4843000 313630 6242200 4566600 6846000 4352300 3664700 3764800 3614300 3672300 1 1 1 1 1 1 1 1 1 1 1 3548500 6556900 64559 7292000 4143200 3123500 3565000 4770600 4348800 4382900 4731000 3304500 6121000 362690 7324800 3962100 3476100 3670600 4755700 4403400 4296500 4552000 1 1 1 1 1 1 1 1 1 1 1 982940000 357130000 625810000 4771 3287 4450 26242;26243;26244;26245 31471;31472;31473;31474 31471 4 ERLEIAR Unmodified 885.50321 0.50321468 1804 Q15424;Q15424-3;Q15424-2;Q15424-4 SAFB Scaffold attachment factor B1 yes no 0 0 0 1 By MS/MS 3 0 1 1 29.811 29.548 3 0.02921 8861 20211116_3441_TMUAki_TMT10x_S_F3 66.351 3.8868 194760 312230 0 306300 222740 170060 221730 160480 162070 163790 230160 181330 291320 14451 310860 213410 181440 223110 163750 169900 159830 219920 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 194760 312230 0 306300 222740 170060 221730 160480 162070 163790 230160 181330 291320 14451 310860 213410 181440 223110 163750 169900 159830 219920 1 1 0 1 1 1 1 1 1 1 1 8786200 0 8786200 4772 1804 4451 26246 31475 31475 1 ERLEIER Unmodified 943.50869 0.50869399 2986 Q9NWH9;Q9NWH9-3 SLTM SAFB-like transcription modulator yes no 0 0 0 1 By MS/MS 2 0 1 1 30.288 30.058 3 0.043602 7465 20211116_3429_TMUAki_TMT10x_P_F2 58.426 12.937 334960 445460 0 427690 433610 531200 329820 256180 255570 267780 331880 311830 415590 23496 439120 412780 528590 337680 274690 265960 261050 317790 1 1 0 1 1 1 1 1 1 1 1 334960 445460 0 427690 433610 531200 329820 256180 255570 267780 331880 311830 415590 23496 439120 412780 528590 337680 274690 265960 261050 317790 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17130000 17130000 0 4773 2986 4452 26247 31476 31476 1 ERLEQEQLER Unmodified 1328.6684 0.66844211 2209 Q8N8S7-3;Q8N8S7-2;Q8N8S7 ENAH Protein enabled homolog yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 30.082 30.028 3 2.3692E-06 7969 20211116_3439_TMUAki_TMT10x_S_F1 142.47 61.381 703810 1181400 10160 1080300 1045400 1064600 861990 626420 684400 609310 900290 655390 1102000 72603 1109000 998360 1075700 878440 658500 711690 595790 861790 4 4 4 4 4 4 4 4 4 4 4 417770 719170 6261.8 619200 735710 809730 504550 387960 415280 375160 535940 389030 670690 44925 641600 700000 803670 521110 415350 430660 366930 513260 2 2 2 2 2 2 2 2 2 2 2 286040 462240 3898.4 461090 309670 254860 357440 238460 269120 234150 364350 266360 431310 27679 467380 298360 271990 357340 243150 281030 228860 348530 2 2 2 2 2 2 2 2 2 2 2 42546000 25279000 17266000 4774 2209 4453 26248;26249;26250 31477;31478;31479;31480 31479 4 ERLEQEQLERER Unmodified 1613.8121 0.81214624 2209 Q8N8S7-3;Q8N8S7-2;Q8N8S7 ENAH Protein enabled homolog yes no 0 0 0 2 By MS/MS By MS/MS 1 0 2 1 1 28.408 28.454 4 0.00935 5496 20211116_3428_TMUAki_TMT10x_P_F1 62.162 39.277 177720 285370 2927.3 254030 205470 176210 179810 163660 160260 142610 198570 165500 266160 17851 260200 196550 184030 183130 166400 165250 140150 190370 2 2 2 2 2 2 2 2 2 2 2 57103 107470 2786.8 85947 90599 85299 71878 59788 62749 55581 79365 53189 100200 7800.5 89190 86569 86363 73605 61950 64825 54457 76046 1 1 1 1 1 1 1 1 1 1 1 120620 177900 140.5 168090 114870 90911 107930 103870 97507 87027 119210 112310 165960 10051 171010 109980 97666 109520 104450 100420 85689 114320 1 1 1 1 1 1 1 1 1 1 1 3728700 2013100 1715700 4775 2209 4454 26251;26252 31481 31481 1 ERLEQQVPVNQVFGQDEMIDVIGVTK Oxidation (M) 2986.507 0.50698602 975 P39023 RPL3 60S ribosomal protein L3 yes yes 0 0 1 1 By MS/MS By MS/MS 4.05 1.36 4 3 6 4 4 10 11 70.822 70.707 3;4;5 7.4415E-39 23118 20211116_3433_TMUAki_TMT10x_P_F5 186.28 174.75 136570000 234110000 1866300 199830000 160970000 224740000 163740000 171940000 168870000 171020000 179710000 127160000 218320000 11711000 206650000 154450000 226230000 166100000 177460000 171960000 167060000 173020000 41 41 23 41 41 41 41 41 41 41 41 70566000 116240000 931870 99654000 71387000 141810000 80911000 83363000 79067000 81747000 87599000 65705000 108400000 6071100 103460000 68702000 140560000 81517000 87659000 80820000 79905000 84239000 19 19 10 19 19 19 19 19 19 19 19 66003000 117870000 934430 100170000 89579000 82930000 82830000 88580000 89808000 89273000 92108000 61458000 109920000 5640000 103180000 85746000 85674000 84587000 89798000 91141000 87160000 88782000 22 22 13 22 22 22 22 22 22 22 22 43752000000 20977000000 22774000000 4776 975 4455 26253;26254;26255;26256;26257;26258;26259;26260;26261;26262;26263;26264;26265;26266;26267;26268;26269;26270;26271;26272;26273 31482;31483;31484;31485;31486;31487;31488;31489;31490;31491;31492;31493;31494;31495;31496;31497;31498;31499;31500;31501;31502;31503;31504;31505;31506;31507;31508;31509;31510;31511;31512;31513;31514;31515;31516;31517;31518;31519;31520;31521;31522 31492 1250 41 ERLEQQVPVNQVFGQDEMIDVIGVTK Unmodified 2970.5121 0.5120714 975 P39023 RPL3 60S ribosomal protein L3 yes yes 0 0 0 1 By MS/MS By MS/MS 4.86 0.833 3 2 2 4 3 76.994 76.976 3;4 3.1237E-17 25865 20211116_3442_TMUAki_TMT10x_S_F4 124.51 111.58 35923000 60674000 324310 57368000 40339000 40377000 43354000 26126000 24384000 29626000 41866000 33448000 56603000 3082900 58504000 38758000 41861000 43231000 27387000 26257000 28790000 39846000 8 8 3 8 8 8 8 8 8 8 8 12663000 20299000 85496 19081000 11323000 18394000 14213000 8497100 7993000 9257600 13506000 11789000 18936000 924800 19542000 10922000 18558000 14073000 9161500 8599300 9010100 12858000 4 4 1 4 4 4 4 4 4 4 4 23261000 40375000 238820 38287000 29016000 21983000 29141000 17629000 16391000 20368000 28360000 21659000 37667000 2158100 38963000 27835000 23303000 29158000 18225000 17658000 19780000 26988000 4 4 2 4 4 4 4 4 4 4 4 9133500000 5646200000 3487300000 4777 975 4455 26274;26275;26276;26277;26278;26279;26280 31523;31524;31525;31526;31527;31528;31529 31529 7 ERLESLNIQR Unmodified 1256.6837 0.68369824 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 1 By MS/MS By MS/MS 4.25 0.829 1 1 2 2 2 34.997 35.051 3 1.0893E-09 8474 20211116_3431_TMUAki_TMT10x_P_F4 181.4 127.63 2019900 3037900 7660.7 3520600 3780200 3308500 2351100 1890600 2130500 1896900 2779700 1880700 2836500 190470 3554400 3588600 3351700 2452700 1993900 2200100 1852400 2661300 3 3 2 3 3 3 3 3 3 3 3 1509700 2253100 6068.5 2649300 3285100 2887100 1794300 1415500 1630500 1436400 2135100 1405600 2103800 146900 2678200 3112200 2893400 1892900 1514100 1683800 1402000 2044000 2 2 1 2 2 2 2 2 2 2 2 510220 784840 1592.1 871370 495070 421450 556850 475010 500000 460590 644590 475080 732660 43572 876100 476350 458300 559840 479820 516280 450430 617340 1 1 1 1 1 1 1 1 1 1 1 165850000 132200000 33652000 4778 1684 4456 26281;26282;26283;26284 31530;31531;31532;31533 31530 4 ERLYPLRK Unmodified 1073.6346 0.63456321 1020 P42766 RPL35 60S ribosomal protein L35 yes yes 0 0 0 2 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 33.209 33.097 4 0.0021566 8696 20211116_3429_TMUAki_TMT10x_P_F2 106.68 67.907 2887100 4179800 25095 4038500 3437300 3257100 2735800 2209400 2988000 2338400 2390500 2688000 3899700 229960 4118300 3277100 3342700 2819500 2303100 3007600 2278500 2324500 4 4 3 4 4 4 4 4 4 4 4 1615900 2417500 24532 2547900 2389900 2073300 1437800 1035200 1663400 1368700 1595500 1504700 2256300 167670 2583000 2269100 2118100 1515200 1114800 1679900 1323000 1541200 2 2 2 2 2 2 2 2 2 2 2 1271200 1762300 562.83 1490600 1047400 1183800 1298000 1174300 1324700 969760 795010 1183300 1643400 62287 1535300 1008000 1224700 1304300 1188300 1327700 955550 783320 2 2 1 2 2 2 2 2 2 2 2 254980000 175940000 79041000 4779 1020 4457 26285;26286;26287;26288 31534;31535;31536;31537 31535 4 ERNEFPEDPEFEAVVR Unmodified 1961.9119 0.91191986 2667 Q9BTU6 PI4K2A Phosphatidylinositol 4-kinase type 2-alpha yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 52.812 52.522 3 8.1637E-15 15061 20211116_3428_TMUAki_TMT10x_P_F1 126.07 106.75 924310 1877300 9294.3 1736100 1052200 1173600 1083100 1561800 1671500 1461600 1564700 860690 1751200 87085 1772600 1010200 1239000 1115200 1565400 1670900 1431600 1512700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 924310 1877300 9294.3 1736100 1052200 1173600 1083100 1561800 1671500 1461600 1564700 860690 1751200 87085 1772600 1010200 1239000 1115200 1565400 1670900 1431600 1512700 1 1 1 1 1 1 1 1 1 1 1 129180000 0 129180000 4780 2667 4458 26289;26290 31538;31539 31538 2 ERNTAAMVCSLENRDECLMCGS 2 Oxidation (M) 2634.0601 0.060075488 791 P23921 RRM1 Ribonucleoside-diphosphate reductase large subunit yes yes 0 0 2 2 By MS/MS By MS/MS 2 0.894 2 1 2 3 2 38.297 38.184 3 1.8263E-07 10763 20211116_3429_TMUAki_TMT10x_P_F2 92.805 92.291 680670 1051000 607.65 1445000 611760 627680 458150 295750 439270 328560 618540 633730 982130 48037 1434100 582390 682400 472170 318430 454070 319530 591140 4 4 1 4 4 4 4 4 4 4 4 379650 561380 0 791230 456430 501110 316130 112730 189000 168290 314080 353490 524680 29736 786610 434100 519660 324070 135880 202280 162070 299110 2 2 0 2 2 2 2 2 2 2 2 301010 489580 607.65 653800 155330 126570 142020 183020 250270 160270 304460 280240 457440 18302 647500 148300 162730 148100 182550 251800 157460 292030 2 2 1 2 2 2 2 2 2 2 2 340740000 226790000 113950000 4781 791 4459 26291;26292;26293;26294;26295 31540;31541;31542;31543 31540 934;935 4 ERNTAAMVCSLENRDECLMCGS Oxidation (M) 2618.0652 0.065160866 791 P23921 RRM1 Ribonucleoside-diphosphate reductase large subunit yes yes 0 0 1 2 By MS/MS 3.33 0.471 2 1 3 48.26 47.907 3 1.2344E-34 16288 20211116_3441_TMUAki_TMT10x_S_F3 188.19 187.34 496420 787200 0 1006900 288230 252720 298710 413210 410780 306500 526700 462200 735370 35731 1000400 276470 307580 305920 408830 417100 303740 504500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 496420 787200 0 1006900 288230 252720 298710 413210 410780 306500 526700 462200 735370 35731 1000400 276470 307580 305920 408830 417100 303740 504500 1 1 0 1 1 1 1 1 1 1 1 157050000 0 157050000 4782 791 4459 26296;26297;26298 31544;31545;31546 31544 934;935 3 ERNVEDLSGGELQR Unmodified 1600.7805 0.78051176 1303 P61221 ABCE1 ATP-binding cassette sub-family E member 1 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.816 1 1 1 1 2 34.252 34.094 3 2.0532E-30 9132 20211116_3429_TMUAki_TMT10x_P_F2 216.99 177.48 1182700 1913000 26040 2568300 3099600 1890800 1342400 1216600 1455600 1066900 1744000 1101400 1787500 147360 2563700 2929300 1952900 1457100 1266500 1486100 1048100 1673500 3 3 2 3 3 3 3 3 3 3 3 549400 818380 16946 1255300 2516200 1366800 769450 520410 689410 458790 842890 511670 765270 88888 1251400 2369700 1366500 869340 569990 710300 450610 808350 1 1 1 1 1 1 1 1 1 1 1 633330 1094600 9094.7 1313000 583400 524070 572990 696180 766220 608090 901150 589750 1022200 58475 1312300 559560 586420 587730 696500 775830 597520 865130 2 2 1 2 2 2 2 2 2 2 2 147150000 112270000 34881000 4783 1303 4460 26299;26300;26301 31547;31548;31549 31547 3 ERPAYAVHGNMLHYVK Unmodified 1883.9465 0.94647165 1207 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 37.262 37.219 5 0.0019073 10970 20211116_3439_TMUAki_TMT10x_S_F1 62.646 46.152 681280 1206800 274.81 1442500 1308100 979880 761930 639590 699200 670270 918230 634310 1126900 61864 1448000 1240300 1019100 799470 668390 721830 653360 879000 2 2 1 2 2 2 2 2 2 2 2 349990 646510 274.81 731680 1004600 769410 502000 369940 408650 333760 488310 325880 603580 38441 740980 950640 772520 532590 395200 422640 327460 468590 1 1 1 1 1 1 1 1 1 1 1 331280 560250 0 710790 303510 210480 259930 269660 290540 336510 429920 308430 523330 23423 707010 289680 246610 266890 273180 299180 325900 410420 1 1 0 1 1 1 1 1 1 1 1 183940000 119800000 64137000 4784 1207 4461 26302;26303 31550;31551 31551 2 ERPAYAVHGNMLHYVK Oxidation (M) 1899.9414 0.94138627 1207 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 1 1 By matching By MS/MS 1 0 2 1 1 32.465 32.48 5 0.017602 8872 20211116_3439_TMUAki_TMT10x_S_F1 48.547 29.714 391460 644370 4046.5 624430 421950 339790 357910 407370 424360 389910 529370 364520 601190 36653 634180 403220 365230 368450 410260 432530 381530 507420 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 391460 644370 4046.5 624430 421950 339790 357910 407370 424360 389910 529370 364520 601190 36653 634180 403220 365230 368450 410260 432530 381530 507420 1 1 1 1 1 1 1 1 1 1 1 41621000 28767000 12854000 4785 1207 4461 26304;26305 31552 31552 1619 1 ERPDLPPIQYEPVLCSR Unmodified 2068.0412 0.041159893 1808 Q15436 SEC23A Protein transport protein Sec23A yes yes 0 0 0 1 By MS/MS 6 0 1 1 56.238 56.31 3 0.030369 16407 20211116_3445_TMUAki_TMT10x_S_F6 45.707 25.601 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4786 1808 4462 26306 31553 31553 1 ERPDLPPVQYEPVLCSRPTCK Unmodified 2540.2516 0.25156337 1809 Q15437 SEC23B Protein transport protein Sec23B yes yes 0 0 0 2 By MS/MS By MS/MS 7 0 2 1 1 48.762 49.316 4 1.4325E-34 15628 20211116_3446_TMUAki_TMT10x_S_F7 183.09 146.57 12586000 23022000 135380 24340000 20610000 25679000 16266000 18158000 17034000 16548000 18601000 11719000 21487000 1264400 24758000 19659000 25908000 16750000 18793000 17351000 16228000 17895000 6 6 5 6 6 6 6 6 6 6 6 8457500 15644000 102960 15843000 16262000 22059000 12893000 12097000 11436000 10759000 12257000 7875400 14598000 888840 16242000 15513000 21865000 13209000 12762000 11727000 10563000 11798000 4 4 3 4 4 4 4 4 4 4 4 4128000 7377900 32412 8497200 4348000 3619800 3373300 6060900 5597500 5789100 6344400 3843800 6888600 375530 8516500 4146500 4043300 3541500 6031000 5623600 5665100 6097100 2 2 2 2 2 2 2 2 2 2 2 1011900000 542430000 469510000 4787 1809 4463 26307;26308 31554;31555;31556;31557;31558;31559 31559 6 ERPGEQSEVAQLIQQTLEQER Unmodified 2467.2303 0.23029389 2552 Q96SB3 PPP1R9B Neurabin-2 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 72.421 72.197 3 0.0020008 24651 20211116_3429_TMUAki_TMT10x_P_F2 60.009 47.576 1602600 2552700 42095 2456100 1487000 2905400 1907300 1616700 1536000 1714500 2006400 1492500 2381500 170480 2519200 1438900 2903100 1901200 1711700 1595600 1670500 1921000 1 1 1 1 1 1 1 1 1 1 1 1602600 2552700 42095 2456100 1487000 2905400 1907300 1616700 1536000 1714500 2006400 1492500 2381500 170480 2519200 1438900 2903100 1901200 1711700 1595600 1670500 1921000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 412140000 412140000 0 4788 2552 4464 26309;26310 31560;31561 31560 2 ERPGFPPR Unmodified 954.50355 0.50354903 3188 Q9UN86;Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 yes no 0 0 0 1 By MS/MS 5 0 2 2 29.411 29.341 3 0.047376 5872 20211116_3433_TMUAki_TMT10x_P_F5 56.81 36.11 353260 541740 0 465550 462160 546300 374870 256220 272630 274660 397550 328900 505220 28000 481530 440760 545040 381650 275690 286260 267490 379640 1 1 0 1 1 1 1 1 1 1 1 353260 541740 0 465550 462160 546300 374870 256220 272630 274660 397550 328900 505220 28000 481530 440760 545040 381650 275690 286260 267490 379640 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5023600 5023600 0 4789 3188 4465 26311;26312 31562;31563 31563 2 ERPPAPSSFVFQEETK Unmodified 1847.9054 0.90537792 1501 Q02952;Q02952-3;Q02952-2 AKAP12 A-kinase anchor protein 12 yes no 0 0 0 1 By MS/MS By MS/MS 4.71 1.03 1 2 2 2 3 4 49.64 49.792 3 4.6115E-21 13715 20211116_3445_TMUAki_TMT10x_S_F6 163.18 121.63 56213000 93297000 183620 103280000 79764000 90136000 60646000 52190000 57875000 57663000 69312000 52339000 87093000 4400900 104460000 75996000 91783000 62430000 55142000 59405000 56091000 66509000 11 11 6 11 11 11 11 11 11 11 11 36902000 59910000 178760 65880000 60976000 73891000 45802000 33317000 36838000 36704000 43449000 34359000 55925000 3431800 66906000 58088000 73870000 46975000 36024000 38103000 35707000 41709000 7 7 5 7 7 7 7 7 7 7 7 19312000 33386000 4859.1 37403000 18788000 16245000 14844000 18873000 21037000 20959000 25863000 17980000 31168000 969140 37557000 17908000 17914000 15455000 19118000 21302000 20384000 24799000 4 4 1 4 4 4 4 4 4 4 4 7884700000 4384400000 3500300000 4790 1501 4466 26313;26314;26315;26316;26317;26318;26319 31564;31565;31566;31567;31568;31569;31570;31571;31572;31573;31574;31575 31575 12 ERPPAPSSFVFQEETKEQSK Unmodified 2320.1335 0.13353995 1501 Q02952;Q02952-3;Q02952-2 AKAP12 A-kinase anchor protein 12 yes no 0 0 0 2 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 46.279 46.414 4 7.7026E-13 12380 20211116_3445_TMUAki_TMT10x_S_F6 133.65 101.26 2405800 5702200 37529 3768300 7101100 11786000 5518600 12449000 10590000 9021000 7607700 2240300 5313500 300190 4100800 6771400 11527000 5837500 12522000 10445000 8951600 7431100 2 2 2 2 2 2 2 2 2 2 2 1362700 3481000 13473 2078200 5462100 9679800 4271600 8090100 7251100 5895500 4850600 1268900 3242900 182950 2332900 5208200 9356600 4487300 8240000 7161200 5848300 4753500 1 1 1 1 1 1 1 1 1 1 1 1043100 2221200 24056 1690100 1639000 2106000 1247100 4359300 3338500 3125400 2757000 971390 2070600 117240 1767900 1563200 2170500 1350200 4281600 3284200 3103300 2677600 1 1 1 1 1 1 1 1 1 1 1 1171700000 760110000 411580000 4791 1501 4467 26320;26321;26322 31576;31577 31577 2 ERPPEEVAAR Unmodified 1152.5887 0.58873523 1872 Q16891;Q16891-2;Q16891-4 IMMT MICOS complex subunit MIC60 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 25.627 25.366 3 0.00073761 5254 20211116_3429_TMUAki_TMT10x_P_F2 90.434 45.066 367280 598470 3716.7 529900 400270 530520 367730 308300 386740 292700 452070 341970 558180 29636 545440 382900 535420 375290 324210 394930 286510 434070 3 3 1 3 3 3 3 3 3 3 3 307420 495340 3716.7 433360 322270 461420 290290 251160 313240 228390 362590 286240 461970 26532 446890 308260 463600 296830 265290 319410 224000 348250 2 2 1 2 2 2 2 2 2 2 2 59868 103130 0 96545 78002 69100 77439 57142 73500 64310 89477 55726 96206 3104 98547 74641 71819 78458 58916 75513 62513 85821 1 1 0 1 1 1 1 1 1 1 1 6250900 3631800 2619100 4792 1872 4468 26323;26324 31578;31579;31580 31579 3 ERPPFIPEGVVAR Unmodified 1465.8041 0.80414773 2735 Q9BZE4;Q9BZE4-3;Q9BZE4-2 GTPBP4 Nucleolar GTP-binding protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 47.06 47.353 3 1.6938E-14 12271 20211116_3434_TMUAki_TMT10x_P_F6 161.84 126.84 16316000 25886000 40382 28505000 25664000 29207000 18317000 22211000 22829000 20943000 22208000 15192000 24164000 1436900 28905000 24420000 29553000 19104000 22898000 23005000 20506000 21443000 7 7 2 7 7 7 7 7 7 7 7 10187000 15879000 40382 17653000 20394000 24280000 13652000 14163000 14542000 13351000 13939000 9484700 14824000 987960 17983000 19385000 24098000 14227000 14886000 14734000 13072000 13465000 4 4 2 4 4 4 4 4 4 4 4 6129700 10007000 0 10851000 5269900 4927200 4665500 8048400 8286700 7592100 8269400 5707000 9340300 448950 10922000 5034800 5455100 4876100 8011900 8271200 7433600 7977700 3 3 0 3 3 3 3 3 3 3 3 5365300000 3581800000 1783500000 4793 2735 4469 26325;26326;26327;26328;26329 31581;31582;31583;31584;31585;31586;31587 31583 7 ERPQDRPEDLDVPPALADFIHQQR Unmodified 2841.4158 0.41580324 1486 Q01780;Q01780-2 EXOSC10 Exosome component 10 yes no 0 0 0 2 By MS/MS 4 0 1 1 60.251 60.14 5 9.8573E-30 19062 20211116_3442_TMUAki_TMT10x_S_F4 176.88 156.39 1377300 2546000 35719 2619600 1444900 1504700 1522200 1596100 1856900 1556500 2052300 1282700 2376000 148420 2650500 1389600 1603700 1550400 1617000 1881400 1521800 1973700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1377300 2546000 35719 2619600 1444900 1504700 1522200 1596100 1856900 1556500 2052300 1282700 2376000 148420 2650500 1389600 1603700 1550400 1617000 1881400 1521800 1973700 1 1 1 1 1 1 1 1 1 1 1 1169200000 0 1169200000 4794 1486 4470 26330 31588 31588 1 ERPQVELTFEETER Unmodified 1761.8533 0.85334235 2899 Q9NQ50 MRPL40 39S ribosomal protein L40, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 42.918 42.793 3 1.2441E-09 14209 20211116_3441_TMUAki_TMT10x_S_F3 111.92 99.158 982990 1423000 0 1694100 1975700 2148800 1327500 1403400 1310100 1207500 1275000 915260 1328800 94890 1715900 1878000 2144300 1379900 1458600 1332300 1187400 1231100 1 1 0 1 1 1 1 1 1 1 1 982990 1423000 0 1694100 1975700 2148800 1327500 1403400 1310100 1207500 1275000 915260 1328800 94890 1715900 1878000 2144300 1379900 1458600 1332300 1187400 1231100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 140290000 100670000 39622000 4795 2899 4471 26331;26332;26333 31589;31590 31590 2 ERPQVELTFEETERR Unmodified 1917.9545 0.95445338 2899 Q9NQ50 MRPL40 39S ribosomal protein L40, mitochondrial yes yes 0 0 0 2 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 4 3 37.202 37.142 4 9.1096E-30 11839 20211116_3441_TMUAki_TMT10x_S_F3 206.81 174.11 7544200 11304000 95595 13132000 14388000 11625000 7672200 7580000 8413900 6682000 9484100 7024800 10555000 780860 13245000 13631000 11844000 8156300 7884000 8565300 6563000 9115800 8 8 7 8 8 8 8 8 8 8 8 5005900 7571600 43627 8399800 12120000 9456300 5462400 4991200 5723400 4419900 6209600 4661000 7068200 525780 8526500 11454000 9468000 5897000 5282900 5828400 4340200 5975200 5 5 4 5 5 5 5 5 5 5 5 2538300 3732400 51967 4731900 2268000 2168300 2209800 2588800 2690600 2262100 3274400 2363800 3486500 255090 4718400 2176400 2376500 2259400 2601100 2736900 2222700 3140700 3 3 3 3 3 3 3 3 3 3 3 634260000 397330000 236930000 4796 2899 4472 26334;26335;26336;26337;26338;26339;26340 31591;31592;31593;31594;31595;31596;31597;31598 31598 8 ERPSQPEGLRK Unmodified 1295.6946 0.69459728 1511 Q04637;Q04637-3;Q04637-8;Q04637-5;Q04637-4;Q04637-9;Q04637-6;Q04637-7 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 2 By MS/MS 5 0 1 1 27.866 27.794 4 1.6422E-05 5829 20211116_3433_TMUAki_TMT10x_P_F5 110.8 90.695 331310 552590 0 433510 428780 533220 346860 211390 257720 253410 363130 308460 515180 26057 452150 408890 529830 353350 232430 269830 245770 347040 1 1 0 1 1 1 1 1 1 1 1 331310 552590 0 433510 428780 533220 346860 211390 257720 253410 363130 308460 515180 26057 452150 408890 529830 353350 232430 269830 245770 347040 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14914000 14914000 0 4797 1511 4473 26341 31599 31599 1 ERPSSAIYPSDSFR Unmodified 1610.7689 0.76888444 2382 Q92974;Q92974-2;Q92974-3 ARHGEF2 Rho guanine nucleotide exchange factor 2 yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 36.482 36.538 3 5.9026E-30 9314 20211116_3433_TMUAki_TMT10x_P_F5 213.69 166.5 2716100 4698100 23242 5771900 8516400 8470200 4631100 5379600 6090600 4562100 5023200 2528800 4387900 288200 5852800 8067100 8393000 4945900 5601100 6094400 4489200 4878800 4 4 2 4 4 4 4 4 4 4 4 2310100 3997000 21582 5017200 8209100 8107700 4303700 4627700 5210800 3883800 4279400 2150800 3733500 254370 5092500 7771800 7990700 4597700 4858500 5228300 3823800 4157000 3 3 1 3 3 3 3 3 3 3 3 406030 701110 1660 754640 307270 362550 327480 751920 879810 678250 743890 378060 654410 33826 760210 295240 402270 348220 742650 866070 665450 721810 1 1 1 1 1 1 1 1 1 1 1 402740000 306930000 95810000 4798 2382 4474 26342;26343;26344 31600;31601;31602;31603 31601 4 ERPTPSLNNNCTTSEDSLVLYNR Unmodified 2679.2559 0.25585671 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 1 By MS/MS By MS/MS 4 0.707 2 4 2 4 4 45.914 45.992 3;4 1.4525E-103 15478 20211116_3441_TMUAki_TMT10x_S_F3 322.79 299.79 10810000 20500000 75548 22045000 15638000 18699000 11956000 18221000 17103000 15443000 16832000 10064000 19135000 887790 22331000 14899000 19245000 12480000 18467000 17165000 15197000 16245000 11 11 6 11 11 11 11 11 11 11 11 5271000 8729300 23913 9183100 9855800 13887000 7697600 7832600 7497800 6531000 7146200 4907100 8147000 408080 9406600 9389900 13721000 7914600 8230300 7624000 6432100 6904600 5 5 2 5 5 5 5 5 5 5 5 5538600 11771000 51636 12862000 5782200 4811400 4258800 10389000 9605200 8912500 9685500 5157300 10988000 479720 12924000 5509000 5523500 4565100 10237000 9540500 8765200 9340800 6 6 4 6 6 6 6 6 6 6 6 6427400000 4325900000 2101600000 4799 542 4475 26345;26346;26347;26348;26349;26350;26351;26352 31604;31605;31606;31607;31608;31609;31610;31611;31612;31613;31614 31609 11 ERQENILVEPDTDEQRDYVIDLEK Unmodified 2945.4254 0.42542446 2644 Q9BRT9 GINS4 DNA replication complex GINS protein SLD5;DNA replication complex GINS protein SLD5, N-terminally processed yes yes 0 0 0 2 By MS/MS By MS/MS 1 0 2 1 1 59.66 59.514 4 1.9689E-37 17900 20211116_3428_TMUAki_TMT10x_P_F1 182.02 163.46 5470700 9886500 79362 9774500 7265600 9264000 6511800 7476000 7314900 7487000 8069600 5094400 9224700 552660 9971800 6952400 9428800 6669400 7691600 7433300 7311700 7761100 2 2 2 2 2 2 2 2 2 2 2 2918900 5399200 62759 5641900 3773500 6526500 3925000 4237400 4172500 4396700 4638500 2718300 5038900 312460 5751800 3625800 6542700 3981000 4428600 4250500 4287500 4460100 1 1 1 1 1 1 1 1 1 1 1 2551800 4487300 16603 4132500 3492100 2737500 2586800 3238600 3142400 3090300 3431100 2376100 4185800 240200 4220100 3326600 2886100 2688400 3263100 3182800 3024200 3301000 1 1 1 1 1 1 1 1 1 1 1 1304100000 855810000 448270000 4800 2644 4476 26353;26354 31615;31616 31615 2 ERQQQVEAVELEAK Unmodified 1655.8479 0.84786304 2107 Q86UP2;Q86UP2-3;Q86UP2-4 KTN1 Kinectin yes no 0 0 0 1 By MS/MS By MS/MS 2 0.816 1 1 1 1 2 38.309 38.107 3 3.3754E-24 12237 20211116_3441_TMUAki_TMT10x_S_F3 196.95 172.16 2783700 4350500 48544 4908700 3923300 3490400 2881000 2431600 3422400 2597700 3613000 2592100 4061600 279320 4947100 3737700 3619500 2993600 2530700 3464800 2530200 3479400 5 5 3 5 5 5 5 5 5 5 5 1016100 1446800 11720 1604500 2045000 1972500 1072200 779380 1193600 870360 1184300 946190 1350600 109580 1631200 1937100 1960000 1142200 855350 1208700 846290 1142700 1 1 1 1 1 1 1 1 1 1 1 1767600 2903700 36823 3304300 1878300 1517900 1808800 1652200 2228700 1727300 2428700 1646000 2711000 169740 3315900 1800700 1659500 1851400 1675300 2256100 1683900 2336700 4 4 2 4 4 4 4 4 4 4 4 206870000 106680000 100180000 4801 2107 4477 26355;26356;26357 31617;31618;31619;31620;31621 31620 5 ERQTNPSAMEVEEDDPVPEIR Oxidation (M) 2456.1125 0.11254652 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 1 1 By MS/MS By MS/MS 1.2 0.4 4 1 2 3 42.338 42.273 3;4 1.7075E-27 11199 20211116_3440_TMUAki_TMT10x_S_F2 179.19 161.91 1810800 3064800 44337 3671200 3021900 3090600 1933400 2956400 3255700 2546900 2876800 1686300 2862000 194510 3693700 2872700 3181300 2059000 3000400 3240800 2504300 2786900 7 7 4 7 7 7 7 7 7 7 7 966320 1490900 38889 1831600 2243500 2424100 1369600 1433200 1553300 1260800 1402200 900030 1392500 134250 1853300 2131600 2410700 1440600 1502000 1566800 1238500 1357300 2 2 2 2 2 2 2 2 2 2 2 844450 1573900 5448.6 1839700 778310 666480 563820 1523300 1702400 1286100 1474600 786300 1469600 60264 1840500 741150 770590 618370 1498400 1674000 1265800 1429500 5 5 2 5 5 5 5 5 5 5 5 1208400000 785690000 422720000 4802 1235 4478 26358;26359;26360;26361;26362 31622;31623;31624;31625;31626;31627;31628 31628 1670 7 ERQTNPSAMEVEEDDPVPEIR Unmodified 2440.1176 0.11763189 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 47.081 46.938 3 1.0128E-34 13079 20211116_3440_TMUAki_TMT10x_S_F2 181.87 173.97 1087000 1961100 7267.7 2466000 841920 652850 657480 1111900 1124300 944140 1530000 1012000 1831800 65486 2453000 801260 787240 691000 1102300 1137800 929010 1463400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1087000 1961100 7267.7 2466000 841920 652850 657480 1111900 1124300 944140 1530000 1012000 1831800 65486 2453000 801260 787240 691000 1102300 1137800 929010 1463400 2 2 1 2 2 2 2 2 2 2 2 286080000 0 286080000 4803 1235 4478 26363;26364 31629;31630 31630 2 ERQTNPSAMEVEEDDPVPEIRR Oxidation (M) 2612.2137 0.21365754 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 1 2 By MS/MS By MS/MS 1.57 0.728 4 2 1 3 4 36.437 36.366 3;4 1.0513E-34 8540 20211116_3428_TMUAki_TMT10x_P_F1 189.84 174.59 1825000 3350000 5901.7 3818700 3478700 4512700 2464200 4177300 4764700 3087600 3316400 1699300 3127700 105370 3872900 3310100 4546900 2623800 4231500 4695200 3060400 3244100 10 10 3 10 10 10 10 10 10 10 10 977040 1981700 735.09 2201700 2732000 3871800 1963700 2883100 3192600 1980700 2017300 909720 1850000 38041 2255500 2600300 3819100 2070100 2954200 3152500 1971700 1982400 5 5 1 5 5 5 5 5 5 5 5 848000 1368300 5166.6 1617000 746690 640880 500460 1294200 1572000 1106800 1299100 789580 1277700 67328 1617400 709880 727770 553690 1277300 1542700 1088700 1261600 5 5 2 5 5 5 5 5 5 5 5 1640200000 1171000000 469120000 4804 1235 4479 26365;26366;26367;26368;26369;26370;26371 31631;31632;31633;31634;31635;31636;31637;31638;31639;31640 31632 1670 10 ERQTNPSAMEVEEDDPVPEIRR Unmodified 2596.2187 0.21874292 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 2 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 40.177 40.054 4 2.9646E-44 11984 20211116_3439_TMUAki_TMT10x_S_F1 200.04 180.48 2998500 5080000 653.55 5808400 4763800 4188600 3440000 3144200 3026300 2579400 4126600 2791700 4742900 216930 5849800 4533100 4343500 3545700 3232600 3135900 2542500 3946700 8 8 1 8 8 8 8 8 8 8 8 1392500 2361700 0 2474200 3145600 3012900 2015200 1605800 1425600 1186000 1824900 1296400 2204100 93658 2524200 2987100 3004500 2085000 1691100 1490300 1175600 1748100 3 3 0 3 3 3 3 3 3 3 3 1606000 2718300 653.55 3334100 1618200 1175700 1424700 1538300 1600600 1393400 2301700 1495300 2538800 123270 3325600 1546000 1339000 1460700 1541400 1645600 1366900 2198700 5 5 1 5 5 5 5 5 5 5 5 756650000 478630000 278020000 4805 1235 4479 26372;26373;26374;26375;26376 31641;31642;31643;31644;31645;31646;31647;31648 31644 8 ERSGVSLAALK Unmodified 1129.6455 0.64552182 606;695;694 P10412;P16403;P16402 HIST1H1E;HIST1H1C;HIST1H1D Histone H1.4;Histone H1.2;Histone H1.3 no no 0 0 0 1 By MS/MS By MS/MS 6.75 0.829 2 1 1 2 2 39.869 40.083 3 2.9871E-06 9612 20211116_3447_TMUAki_TMT10x_S_F8 120.2 74.223 5924400 8627400 64279 10721000 10158000 7056300 5598600 4780500 5862600 4753500 7284500 5516600 8058100 595770 10735000 9627900 7363400 5925500 4974500 6003100 4643700 6983100 6 6 4 6 6 6 6 6 6 6 6 2985100 4124100 20956 5132400 7694100 4905800 2849400 2228100 2965400 2243500 3540300 2779600 3852000 332970 5161300 7256900 4951500 3147200 2401000 3032100 2190500 3397400 2 2 2 2 2 2 2 2 2 2 2 2939400 4503300 43323 5588900 2463500 2150500 2749200 2552300 2897200 2510000 3744200 2737000 4206100 262800 5573500 2371000 2411900 2778300 2573500 2970900 2453100 3585700 4 4 2 4 4 4 4 4 4 4 4 679700000 584830000 94864000 4806 606;695;694 4480 26377;26378;26379;26380 31649;31650;31651;31652;31653;31654 31653 6 ERSGVSLAALKK Unmodified 1257.7405 0.74048484 606;695;694 P10412;P16403;P16402 HIST1H1E;HIST1H1C;HIST1H1D Histone H1.4;Histone H1.2;Histone H1.3 no no 0 0 0 2 By MS/MS 2 0 1 1 38.277 38.371 3 0.034788 9486 20211116_3440_TMUAki_TMT10x_S_F2 58.831 6.9562 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4807 606;695;694 4481 26381 31655 31655 1 ERSNVVITR Unmodified 1072.5989 0.59890598 2107 Q86UP2;Q86UP2-3;Q86UP2-4;Q86UP2-2 KTN1 Kinectin yes no 0 0 0 1 By MS/MS 5 0 1 1 26.527 26.453 3 0.0048249 5294 20211116_3433_TMUAki_TMT10x_P_F5 71.524 42.566 149910 230560 12237 254450 159170 239570 171880 124310 127100 130390 168070 139670 215230 23962 257670 153680 242380 172290 132390 132720 127090 160860 1 1 1 1 1 1 1 1 1 1 1 149910 230560 12237 254450 159170 239570 171880 124310 127100 130390 168070 139670 215230 23962 257670 153680 242380 172290 132390 132720 127090 160860 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2867700 2867700 0 4808 2107 4482 26382 31656 31656 1 ERSPEVLSGGEDGAVR Unmodified 1656.8067 0.80672651 2119 Q86W42;Q86W42-3;Q86W42-2 THOC6 THO complex subunit 6 homolog yes no 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 32.214 32.103 3 6.144E-15 8347 20211116_3429_TMUAki_TMT10x_P_F2 144.72 119.39 266800 398030 485.12 486300 1015500 640780 401660 352200 382360 279350 460320 248420 371730 32896 492180 958260 636770 438920 370480 392590 275830 441640 2 2 1 2 2 2 2 2 2 2 2 266800 398030 485.12 486300 1015500 640780 401660 352200 382360 279350 460320 248420 371730 32896 492180 958260 636770 438920 370480 392590 275830 441640 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 46442000 46442000 0 4809 2119 4483 26383;26384 31657;31658 31658 2 ERTEEPMETEPK Oxidation (M) 1490.6559 0.65588809 1735 Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 1 1 By MS/MS 2 0 1 1 27.849 27.612 3 0.00020251 6608 20211116_3429_TMUAki_TMT10x_P_F2 90.759 78.593 105310 166230 0 123940 149080 154030 106480 59586 67829 77543 118980 98036 154950 7566.9 129880 141760 152930 109040 65886 72510 74992 113190 1 1 0 1 1 1 1 1 1 1 1 105310 166230 0 123940 149080 154030 106480 59586 67829 77543 118980 98036 154950 7566.9 129880 141760 152930 109040 65886 72510 74992 113190 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4403800 4403800 0 4810 1735 4484 26385 31659 31659 2332 1 ERTEIELSYAK Unmodified 1337.6827 0.68269519 2546 Q96RU3;Q96RU3-2;Q96RU3-4;Q96RU3-3;Q96RU3-5 FNBP1 Formin-binding protein 1 yes no 0 0 0 1 By MS/MS 4 0 1 1 40.258 40.456 3 0.0014495 10958 20211116_3442_TMUAki_TMT10x_S_F4 76.073 53.352 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4811 2546 4485 26386 31660 31660 1 ERTLSADASVNTLPVVVSR Unmodified 2013.0855 0.085467549 2349 Q92615 LARP4B La-related protein 4B yes yes 0 0 0 1 By MS/MS 5 0 1 1 49.167 49.35 3 0.00015681 14398 20211116_3433_TMUAki_TMT10x_P_F5 70.897 58.732 1878700 2812800 8560.3 3040100 3046600 3553800 2438300 2193700 2126000 1949400 2243400 1749300 2625500 180090 3093000 2906400 3558200 2495400 2291700 2180700 1914000 2160500 1 1 1 1 1 1 1 1 1 1 1 1878700 2812800 8560.3 3040100 3046600 3553800 2438300 2193700 2126000 1949400 2243400 1749300 2625500 180090 3093000 2906400 3558200 2495400 2291700 2180700 1914000 2160500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 117520000 117520000 0 4812 2349 4486 26387 31661 31661 1 ERTNEGVIEFR Unmodified 1348.6735 0.67352749 1613 Q13247;Q13247-3 SRSF6 Serine/arginine-rich splicing factor 6 yes no 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 34.431 34.313 3 1.6111E-05 9209 20211116_3429_TMUAki_TMT10x_P_F2 104.41 76.668 8808400 14203000 36294 14379000 11816000 9197900 8626300 5955500 7629400 6936100 10095000 8201800 13253000 800990 14579000 11252000 9616900 8885900 6248100 7892800 6733700 9662300 4 4 3 4 4 4 4 4 4 4 4 2670300 3992500 18446 4756700 5997200 4351200 2670700 1946100 2422800 2074300 3148300 2486400 3728300 285170 4792600 5667900 4403700 2875300 2103900 2501300 2020600 3014500 2 2 2 2 2 2 2 2 2 2 2 6138200 10210000 17848 9622000 5819200 4846600 5955600 4009300 5206700 4861700 6947100 5715300 9525100 515820 9786100 5583900 5213200 6010700 4144200 5391400 4713100 6647800 2 2 1 2 2 2 2 2 2 2 2 617430000 405560000 211870000 4813 1613 4487 26388;26389;26390;26391 31662;31663;31664;31665 31663 4 ERVEAGDVIYIEANSGAVK Unmodified 2019.0273 0.027283968 3225 Q9Y265;Q9Y265-2 RUVBL1 RuvB-like 1 yes no 0 0 0 1 By MS/MS By MS/MS 3 1.29 1 1 2 1 1 3 3 54.201 54.043 3 8.0266E-18 17706 20211116_3430_TMUAki_TMT10x_P_F3 153.68 131.07 16738000 28560000 253000 30083000 21530000 22711000 18552000 17188000 20399000 19742000 23445000 15586000 26655000 1625400 30472000 20580000 23467000 19031000 17831000 20779000 19175000 22522000 7 7 6 7 7 7 7 7 7 7 7 5101800 8818800 77358 9181100 8592400 12007000 7169700 5111300 6588300 6154700 7081200 4750900 8230200 543960 9382900 8207700 11902000 7328900 5576100 6745400 5968000 6815700 2 2 2 2 2 2 2 2 2 2 2 11636000 19741000 175640 20902000 12937000 10705000 11382000 12077000 13810000 13587000 16364000 10835000 18425000 1081500 21089000 12372000 11565000 11702000 12255000 14034000 13207000 15706000 5 5 4 5 5 5 5 5 5 5 5 2234900000 1360400000 874540000 4814 3225 4488 26392;26393;26394;26395;26396;26397 31666;31667;31668;31669;31670;31671;31672;31673 31667 8 ERVEAVNMAEGIIHDTETK Unmodified 2141.0423 0.042282105 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 59.215 59.066 4 2.4361E-08 17710 20211116_3428_TMUAki_TMT10x_P_F1 110.67 89.465 5044300 7992300 58533 10097000 6303700 7213700 5797400 4960900 4827400 5065500 6197300 4697200 7465600 490400 10109000 6035100 7476100 5877000 5160700 5002100 4942900 5935900 2 2 2 2 2 2 2 2 2 2 2 2802500 4126500 20409 5634800 4070400 5358100 3376000 2426200 2388200 2642400 3161300 2609500 3856100 269120 5637800 3886700 5409700 3430100 2621200 2500200 2571800 3025700 1 1 1 1 1 1 1 1 1 1 1 2241900 3865800 38124 4462300 2233300 1855600 2421500 2534600 2439200 2423100 3036000 2087700 3609400 221280 4471200 2148400 2066400 2446900 2539400 2501900 2371100 2910200 1 1 1 1 1 1 1 1 1 1 1 725410000 498490000 226910000 4815 972 4489 26398;26399 31674;31675 31674 2 ERVEAVNMAEGIIHDTETK Oxidation (M) 2157.0372 0.037196727 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 1 1 By MS/MS 3 0 1 1 48.396 48.044 4 0.00016051 16418 20211116_3441_TMUAki_TMT10x_S_F3 70.99 57.76 1050700 1629800 0 1896000 801000 919270 823820 1511500 1675300 1541100 1478800 978270 1521800 76292 1900800 768140 1010000 860800 1507800 1660100 1503900 1432600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1050700 1629800 0 1896000 801000 919270 823820 1511500 1675300 1541100 1478800 978270 1521800 76292 1900800 768140 1010000 860800 1507800 1660100 1503900 1432600 1 1 0 1 1 1 1 1 1 1 1 164120000 0 164120000 4816 972 4489 26400 31676 31676 1234 1 ERVEFILEQMR Oxidation (M) 1464.7395 0.73949856 74 O00232;O00232-2 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes no 0 0 1 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 45.677 45.667 3 0.0023864 14169 20211116_3430_TMUAki_TMT10x_P_F3 68.515 54.309 10477000 16442000 14751 18025000 13181000 12879000 10884000 12006000 11482000 10422000 14266000 9754500 15348000 847990 18200000 12577000 13418000 11179000 12203000 11753000 10244000 13676000 5 5 1 5 5 5 5 5 5 5 5 4281600 6338500 0 7137100 7905500 8487100 5021100 5305200 5243200 4640100 6128500 3986300 5917500 374170 7244800 7505600 8491300 5250900 5534600 5355700 4559200 5884500 2 2 0 2 2 2 2 2 2 2 2 6195300 10104000 14751 10888000 5275600 4391800 5862900 6700700 6238600 5782200 8137800 5768200 9430600 473830 10955000 5071500 4926700 5927900 6668800 6397600 5685000 7791500 3 3 1 3 3 3 3 3 3 3 3 614140000 266140000 348000000 4817 74 4490 26401;26402;26403;26404 31677;31678;31679;31680;31681;31682 31677 41 6 ERVLIPVK Unmodified 952.60695 0.60695147 1538 Q07666;Q07666-2;Q07666-3 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 40.463 40.697 3 0.00082964 11646 20211116_3435_TMUAki_TMT10x_P_F7 111.06 88.28 952550 1681800 16748 1567800 1054900 769910 813220 1028500 1345800 1006200 1343400 887040 1568900 96016 1595600 1006400 839370 854010 1032000 1345700 983660 1296000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 952550 1681800 16748 1567800 1054900 769910 813220 1028500 1345800 1006200 1343400 887040 1568900 96016 1595600 1006400 839370 854010 1032000 1345700 983660 1296000 1 1 1 1 1 1 1 1 1 1 1 50069000 0 50069000 4818 1538 4491 26405;26406;26407;26408 31683;31684;31685;31686 31683 4 ERYFDRVDENNPEYLR Unmodified 2113.9817 0.98173076 938 P35611;P35611-2;P35611-4;P35611-6;P35611-3;P35611-5 ADD1 Alpha-adducin yes no 0 0 0 2 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 41.234 40.948 4 2.2177E-35 13379 20211116_3441_TMUAki_TMT10x_S_F3 207.53 179.77 1613800 2386500 36964 3067300 3038200 2937500 1945600 2080800 2061300 1704400 2362700 1502900 2229400 188190 3079100 2887900 2981300 2034300 2147600 2102700 1680100 2269900 2 2 2 2 2 2 2 2 2 2 2 1097300 1672100 28006 1991200 2619300 2570600 1606800 1488900 1345400 1121100 1675000 1021900 1561500 138390 2017500 2487800 2558700 1674700 1557400 1391800 1110100 1605600 1 1 1 1 1 1 1 1 1 1 1 516550 714410 8957.1 1076100 418850 366920 338840 591830 715930 583250 687740 481030 667970 49805 1061600 400140 422590 359560 590120 710830 569980 664310 1 1 1 1 1 1 1 1 1 1 1 355810000 121100000 234700000 4819 938 4492 26409;26410 31687;31688 31688 2 ERYGISSMIQSQEKPDR Oxidation (M) 2038.9742 0.97420254 678 P14868 DARS Aspartate--tRNA ligase, cytoplasmic yes yes 0 0 1 2 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 33.07 33.129 4 1.1018E-07 7680 20211116_3431_TMUAki_TMT10x_P_F4 110.34 96.179 2040300 3036500 21254 4157700 5860500 4652400 2536900 2111000 3125000 2104700 2747000 1899900 2837600 238730 4169700 5537000 4651900 2765200 2274400 3140000 2055800 2661600 8 8 5 8 8 8 8 8 8 8 8 1787200 2629800 19586 3657800 5651300 4488000 2337300 1916100 2920400 1902500 2454400 1664200 2457700 220550 3671400 5336600 4463100 2562200 2077500 2929000 1858600 2382100 3 3 3 3 3 3 3 3 3 3 3 253090 406720 1668.2 499810 209190 164340 199520 194910 204580 202220 292600 235660 379860 18181 498300 200430 188800 203050 196850 211030 197200 279530 5 5 2 5 5 5 5 5 5 5 5 427330000 420670000 6655400 4820 678 4493 26411;26412;26413;26414;26415 31689;31690;31691 31689 759 3 ERYGISSMIQSQEKPDR Unmodified 2022.9793 0.97928792 678 P14868 DARS Aspartate--tRNA ligase, cytoplasmic yes yes 0 0 0 2 By MS/MS By MS/MS 6 0 2 1 1 39.694 39.785 4 3.7683E-36 9547 20211116_3434_TMUAki_TMT10x_P_F6 214.66 184.55 1867900 2753900 5123.6 3769600 3250300 2429400 2172000 1464600 1463400 1353400 2403800 1739200 2573500 177030 3753800 3089600 2535900 2237600 1534500 1553200 1326400 2289700 3 3 1 3 3 3 3 3 3 3 3 1085000 1540000 0 2241900 2627500 1957000 1590100 757160 717870 727370 1379700 1010200 1439600 111130 2233300 2493300 1984300 1640200 829490 791960 711610 1310400 1 1 0 1 1 1 1 1 1 1 1 782950 1213900 5123.6 1527700 622740 472450 581830 707440 745550 626020 1024100 729030 1133900 65902 1520500 596300 551660 597380 704980 761190 614760 979300 2 2 1 2 2 2 2 2 2 2 2 380660000 323590000 57064000 4821 678 4493 26416;26417 31692;31693;31694 31692 3 ERYSYVCPDLVK Unmodified 1527.7392 0.73916421 1296 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 46.418 46.555 3 0.00029786 12067 20211116_3434_TMUAki_TMT10x_P_F6 83.087 53.398 5267300 9601700 36191 10884000 8325000 8423000 5479900 7674900 8082000 6445600 8063600 4904000 8964200 428990 10976000 7907600 8715700 5787800 7804300 8107500 6345700 7779200 3 3 1 3 3 3 3 3 3 3 3 2067700 3648100 0 4106100 5571600 5722300 3276200 3202900 3287000 2257300 2892800 1925000 3405800 182140 4180700 5282100 5673200 3443500 3355300 3329500 2243600 2802800 1 1 0 1 1 1 1 1 1 1 1 3199600 5953500 36191 6777400 2753400 2700700 2203700 4472000 4795000 4188300 5170800 2979000 5558400 246850 6794900 2625500 3042600 2344300 4449000 4778000 4102200 4976400 2 2 1 2 2 2 2 2 2 2 2 604210000 230340000 373860000 4822 1296 4494 26418;26419;26420;26421 31695;31696;31697;31698 31696 4 ESAAPAAAPTAEAPPPSVVTRPEPQALPSPAIR Unmodified 3245.7044 0.70444027 2368 Q92841 DDX17 Probable ATP-dependent RNA helicase DDX17 yes yes 0 0 0 1 By MS/MS By MS/MS 5.2 0.4 4 1 2 3 52.798 52.976 3;4 5.6227E-115 14707 20211116_3444_TMUAki_TMT10x_S_F5 279.72 262.36 5157000 11119000 72537 9595900 6999600 10899000 5897300 13309000 13252000 11841000 9958800 4802100 10369000 361410 9916400 6687600 11077000 6267200 13366000 13043000 11625000 9708800 8 8 3 8 8 8 8 8 8 8 8 1515900 3787600 11026 3697000 3760200 6642100 3467000 4182800 4419400 3889700 3204300 1411500 3533900 95516 3822000 3598500 6529600 3561500 4368200 4411200 3810900 3128700 3 3 1 3 3 3 3 3 3 3 3 3641100 7331000 61511 5898900 3239400 4257200 2430300 9126300 8833000 7951000 6754500 3390700 6835200 265890 6094400 3089200 4547600 2705700 8998100 8632100 7813800 6580200 5 5 2 5 5 5 5 5 5 5 5 3579400000 1580100000 1999300000 4823 2368 4495 26422;26423;26424;26425;26426 31699;31700;31701;31702;31703;31704;31705;31706 31702 8 ESAFEFLSSA Unmodified 1086.487 0.4869555 988 P40925;P40925-3;P40925-2 MDH1 Malate dehydrogenase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 2.57 1.4 2 2 1 1 1 2 5 79.012 78.987 2 4.6474E-07 27826 20211116_3439_TMUAki_TMT10x_S_F1 111.01 92.277 16163000 26415000 53362 26605000 19309000 21594000 20256000 14490000 14966000 15674000 18426000 15049000 24648000 1352900 27053000 18536000 22148000 20333000 15127000 15579000 15260000 17668000 5 5 1 5 5 5 5 5 5 5 5 5705600 9164700 0 9168200 5233500 9922500 6353800 5101800 5194600 5629000 6126700 5312000 8551600 408670 9364100 5042600 9953500 6350500 5446200 5368400 5475800 5881400 2 2 0 2 2 2 2 2 2 2 2 10458000 17250000 53362 17437000 14075000 11671000 13902000 9388600 9771200 10045000 12299000 9737200 16097000 944250 17689000 13494000 12194000 13982000 9680500 10211000 9783700 11786000 3 3 1 3 3 3 3 3 3 3 3 4711100000 1652000000 3059200000 4824 988 4496 26427;26428;26429;26430;26431;26432;26433 31707;31708;31709;31710;31711;31712 31709 6 ESAINVAEGKK Unmodified 1144.6088 0.60880197 3148 Q9UJZ1;Q9UJZ1-2 STOML2 Stomatin-like protein 2, mitochondrial yes no 0 0 0 1 By MS/MS 5 0 1 1 38.239 38.385 3 0.0023915 8928 20211116_3444_TMUAki_TMT10x_S_F5 74.987 58.262 639220 1021600 9877.2 972330 690410 668790 737070 759950 847150 695620 878950 595250 953070 62918 990880 663770 702090 748610 766140 858140 682030 846900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 639220 1021600 9877.2 972330 690410 668790 737070 759950 847150 695620 878950 595250 953070 62918 990880 663770 702090 748610 766140 858140 682030 846900 1 1 1 1 1 1 1 1 1 1 1 19590000 0 19590000 4825 3148 4497 26434 31713 31713 1 ESAIVSRPLNPFTAK Unmodified 1628.8886 0.88860564 3259 Q9Y314 NOSIP Nitric oxide synthase-interacting protein yes yes 0 0 0 1 By MS/MS By MS/MS 2.8 2.64 2 2 1 3 2 52.954 52.773 3 1.9633E-15 15137 20211116_3428_TMUAki_TMT10x_P_F1 159.69 134.76 30059000 50584000 317530 55730000 37959000 43510000 27568000 38625000 38275000 35306000 41109000 27989000 47219000 2835900 56308000 36151000 44969000 28838000 39419000 38570000 34618000 39569000 8 8 7 8 8 8 8 8 8 8 8 12346000 19640000 58731 21747000 20958000 27050000 15132000 15584000 15605000 13622000 16696000 11496000 18334000 1136300 22116000 19949000 26972000 15668000 16365000 15893000 13385000 16072000 3 3 2 3 3 3 3 3 3 3 3 17712000 30944000 258790 33983000 17001000 16460000 12435000 23041000 22670000 21684000 24413000 16494000 28885000 1699700 34192000 16202000 17997000 13169000 23054000 22677000 21233000 23497000 5 5 5 5 5 5 5 5 5 5 5 1586700000 951130000 635570000 4826 3259 4498 26435;26436;26437;26438;26439 31714;31715;31716;31717;31718;31719;31720;31721;31722 31714 9 ESAPFAVIGSNTVVEAK Unmodified 1717.8887 0.88866522 2600 Q99719;Q99719-2 SEPT5 Septin-5 yes no 0 0 0 0 By matching By MS/MS 5 0 2 1 1 64.437 64.534 3 0.0089209 19427 20211116_3444_TMUAki_TMT10x_S_F5 50.787 32.87 5872900 9760100 200150 9864500 7468200 6094000 6680300 7760200 6993500 7176100 8292400 5469700 9107600 695780 9999700 7153200 6478200 6827000 7788400 7147100 7032600 7959200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5872900 9760100 200150 9864500 7468200 6094000 6680300 7760200 6993500 7176100 8292400 5469700 9107600 695780 9999700 7153200 6478200 6827000 7788400 7147100 7032600 7959200 2 2 2 2 2 2 2 2 2 2 2 447350000 268660000 178690000 4827 2600 4499 26440;26441 31723;31724 31723 2 ESCLEAYTGIVQGLK Unmodified 1666.8236 0.82362212 1739 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 0 By MS/MS By MS/MS 6.75 0.829 2 1 1 1 3 74.24 74.243 3 8.5069E-10 25842 20211116_3446_TMUAki_TMT10x_S_F7 130.2 102.86 18647000 29831000 339340 31521000 20700000 26969000 23121000 17810000 15694000 19575000 23236000 17365000 27842000 1891000 31969000 19929000 27549000 23097000 18623000 16559000 19045000 22182000 5 5 5 5 5 5 5 5 5 5 5 7765700 11867000 116300 12992000 8530400 14829000 9569200 7632100 6240400 8449100 9395500 7231500 11077000 762930 13202000 8212500 14832000 9549100 8147500 6606100 8218200 8965800 2 2 2 2 2 2 2 2 2 2 2 10882000 17964000 223040 18529000 12169000 12140000 13552000 10178000 9453800 11126000 13841000 10134000 16765000 1128100 18768000 11717000 12717000 13547000 10475000 9952700 10827000 13216000 3 3 3 3 3 3 3 3 3 3 3 1356700000 375740000 980920000 4828 1739 4500 26442;26443;26444;26445 31725;31726;31727;31728;31729;31730 31729 6 ESCLEAYTGIVQGLKGDQENVHPDVMLVQPR Oxidation (M) 3497.6919 0.69190303 1739 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 1 1 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 72.418 72.546 4 5.8474E-11 23076 20211116_3445_TMUAki_TMT10x_S_F6 99.871 94.584 7135400 12329000 36626 11863000 8502800 12549000 9009300 7736400 6974800 7452700 8870100 6643700 11503000 602480 12145000 8165100 12634000 9049100 8100200 7251900 7290400 8498000 3 3 2 3 3 3 3 3 3 3 3 3496400 5810100 0 5634400 3535300 7837300 3552000 4144800 4112000 3722500 4251300 3255100 5420800 248040 5793400 3387500 7765300 3619400 4387800 4163700 3653000 4096800 1 1 0 1 1 1 1 1 1 1 1 3639000 6518900 36626 6228100 4967500 4711700 5457300 3591600 2862800 3730200 4618800 3388500 6081800 354440 6351600 4777600 4868300 5429700 3712400 3088200 3637400 4401200 2 2 2 2 2 2 2 2 2 2 2 2313200000 1346700000 966480000 4829 1739 4501 26446;26447 31731;31732;31733 31732 2340 3 ESCLEAYTGIVQGLKGDQENVHPDVMLVQPR Unmodified 3481.697 0.69698841 1739 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 1 By MS/MS 6.5 1.12 1 1 1 1 4 76.125 76.122 4 5.836E-57 26604 20211116_3446_TMUAki_TMT10x_S_F7 203.94 194.8 9883800 17555000 214840 19043000 12785000 9087600 13333000 4433200 3463800 6185100 10060000 9204200 16387000 1039000 19173000 12284000 9767300 13190000 4794700 4189800 5968600 9500400 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9883800 17555000 214840 19043000 12785000 9087600 13333000 4433200 3463800 6185100 10060000 9204200 16387000 1039000 19173000 12284000 9767300 13190000 4794700 4189800 5968600 9500400 3 3 2 3 3 3 3 3 3 3 3 3000600000 0 3000600000 4830 1739 4501 26448;26449;26450;26451 31734;31735;31736 31736 3 ESDLPSAILQTSGVSEFTK Unmodified 2008.0001 6.61646E-05 2574 Q99459 CDC5L Cell division cycle 5-like protein yes yes 0 0 0 0 By MS/MS 5 0 1 1 77.289 77.3 3 0.10105 24709 20211116_3444_TMUAki_TMT10x_S_F5 28.044 10.449 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4831 2574 4502 26452 31737 31737 1 ESDVPLKTEEFEVTK Unmodified 1749.8673 0.86726108 2394 Q969H8 MYDGF Myeloid-derived growth factor yes yes 0 0 0 1 By MS/MS 2.33 0.471 2 1 3 55.035 54.786 3 3.9037E-12 18056 20211116_3430_TMUAki_TMT10x_P_F3 125.98 102.84 3569300 5741100 0 6854500 9295400 10240000 5910100 5728800 6496700 5040800 5494900 3323100 5361300 339920 6964700 8825400 10122000 6190100 6031700 6548000 4951400 5331700 1 1 0 1 1 1 1 1 1 1 1 3569300 5741100 0 6854500 9295400 10240000 5910100 5728800 6496700 5040800 5494900 3323100 5361300 339920 6964700 8825400 10122000 6190100 6031700 6548000 4951400 5331700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 319300000 319300000 0 4832 2394 4503 26453;26454;26455 31738;31739;31740 31740 3 ESDYFTPQGEFR Unmodified 1474.6365 0.63647328 2271 Q8TCJ2 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B yes yes 0 0 0 0 By matching By MS/MS 2.33 0.471 2 1 1 2 52.146 51.883 2 1.1557E-05 15113 20211116_3440_TMUAki_TMT10x_S_F2 108.43 64.624 1089800 1833100 13008 1949600 966450 1024800 869230 1531700 1572200 1492700 1459900 1014800 1710900 100750 1966800 925020 1112400 908540 1530600 1564700 1459500 1411800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1089800 1833100 13008 1949600 966450 1024800 869230 1531700 1572200 1492700 1459900 1014800 1710900 100750 1966800 925020 1112400 908540 1530600 1564700 1459500 1411800 1 1 1 1 1 1 1 1 1 1 1 449700000 246570000 203130000 4833 2271 4504 26456;26457;26458 31741 31741 1 ESEITDEDIDGILER Unmodified 1732.8003 0.80030372 260 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 4 2 3 3 65.881 65.762 2;3 2.2818E-155 22449 20211116_3439_TMUAki_TMT10x_S_F1 430.33 361.79 17358000 29994000 14393 29878000 18992000 23963000 18373000 21573000 21614000 21144000 23177000 16161000 27988000 1319200 30400000 18185000 24723000 18769000 22042000 21902000 20668000 22309000 5 5 1 5 5 5 5 5 5 5 5 6436000 10526000 14393 10617000 8026400 13394000 8233500 7718600 8073200 7712000 8346400 5992100 9822200 500890 10866000 7697700 13346000 8335800 8133900 8229800 7532200 8043100 2 2 1 2 2 2 2 2 2 2 2 10922000 19468000 0 19260000 10965000 10569000 10139000 13854000 13541000 13432000 14830000 10169000 18165000 818360 19534000 10488000 11377000 10433000 13908000 13672000 13136000 14266000 3 3 0 3 3 3 3 3 3 3 3 9067400000 5222400000 3845000000 4834 260 4505 26459;26460;26461;26462;26463;26464 31742;31743;31744;31745;31746;31747;31748 31746 7 ESELELPVPGAGGDGADPGLSK Unmodified 2094.0117 0.011693483 204 O43251-8;O43251-6 RBFOX2 RNA binding protein fox-1 homolog 2 yes no 0 0 0 0 By matching By MS/MS 2.5 0.5 1 1 1 1 68.454 68.071 3 0.097909 24543 20211116_3441_TMUAki_TMT10x_S_F3 25.15 15.192 3569800 6819700 52312 4731900 4869200 6139600 5097900 5246100 6240000 6081100 5645000 3324200 6355700 362910 4995800 4677700 6147700 5194400 5404000 6277000 5904700 5463900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3569800 6819700 52312 4731900 4869200 6139600 5097900 5246100 6240000 6081100 5645000 3324200 6355700 362910 4995800 4677700 6147700 5194400 5404000 6277000 5904700 5463900 1 1 1 1 1 1 1 1 1 1 1 499350000 237100000 262260000 4835 204 4506 26465;26466 31749 31749 1 ESELGDRPLQVGER Unmodified 1583.7903 0.79034816 20 A6NHR9;A6NHR9-2 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 0 1 By MS/MS 2 0 1 1 35.726 35.501 3 0.00095629 9750 20211116_3429_TMUAki_TMT10x_P_F2 75.445 40.76 433330 640320 19132 903290 1234200 823320 642200 418920 514460 384520 594630 403620 598470 64973 901740 1169700 834590 678410 445310 531810 376960 571140 1 1 1 1 1 1 1 1 1 1 1 433330 640320 19132 903290 1234200 823320 642200 418920 514460 384520 594630 403620 598470 64973 901740 1169700 834590 678410 445310 531810 376960 571140 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20877000 20877000 0 4836 20 4507 26467 31750 31750 1 ESELTDEDITTILER Unmodified 1762.8473 0.84725392 844 P28370-2;P28370 SMARCA1 Probable global transcription activator SNF2L1 yes no 0 0 0 0 By MS/MS 1 0 2 2 72.308 72.18 2;3 6.662E-36 25017 20211116_3439_TMUAki_TMT10x_S_F1 209.67 179.42 1619700 2883400 6783.8 2794200 2017800 1885000 1930000 1807500 1757800 1963500 2158200 1508200 2690200 146190 2843200 1932900 1974700 1957000 1846400 1810000 1911300 2069500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1619700 2883400 6783.8 2794200 2017800 1885000 1930000 1807500 1757800 1963500 2158200 1508200 2690200 146190 2843200 1932900 1974700 1957000 1846400 1810000 1911300 2069500 1 1 1 1 1 1 1 1 1 1 1 623870000 0 623870000 4837 844 4508 26468;26469 31751;31752 31752 2 ESESAPGDFSLSVK Unmodified 1451.678 0.67800374 1388 P62993 GRB2 Growth factor receptor-bound protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 54.831 54.672 2;3 2.0619E-09 16319 20211116_3431_TMUAki_TMT10x_P_F4 115.57 87.953 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4838 1388 4509 26470;26471;26472 31753;31754;31755 31754 3 ESESCDCLQGFQLTHSLGGGTGSGMGTLLISK Oxidation (M) 3342.5166 0.51664078 1668;2689 Q13885;Q9BVA1 TUBB2A;TUBB2B Tubulin beta-2A chain;Tubulin beta-2B chain no no 0 0 1 0 By MS/MS By MS/MS 6.14 1.25 1 1 2 2 1 4 3 68.652 68.749 3;4 1.1736E-21 23542 20211116_3446_TMUAki_TMT10x_S_F7 139.52 133.55 18669000 33147000 105050 29206000 21859000 34632000 21543000 23455000 23111000 25966000 24413000 17383000 30915000 1254400 30154000 20951000 34695000 21917000 24487000 23489000 25256000 23510000 10 10 4 10 10 10 10 10 10 10 10 9604600 16501000 64257 14682000 8717000 22144000 10014000 12022000 11248000 12580000 12010000 8943100 15391000 484910 15218000 8393200 21871000 10128000 12751000 11416000 12263000 11562000 5 5 1 5 5 5 5 5 5 5 5 9064600 16646000 40791 14524000 13142000 12488000 11529000 11433000 11863000 13386000 12403000 8439700 15525000 769490 14936000 12558000 12824000 11789000 11736000 12073000 12993000 11948000 5 5 3 5 5 5 5 5 5 5 5 12050000000 8702300000 3347600000 4839 1668;2689 4510 26473;26474;26475;26476;26477;26478;26479 31756;31757;31758;31759;31760;31761;31762;31763;31764;31765 31763 2238 10 ESESCDCLQGFQLTHSLGGGTGSGMGTLLISK Unmodified 3326.5217 0.52172616 1668;2689 Q13885;Q9BVA1 TUBB2A;TUBB2B Tubulin beta-2A chain;Tubulin beta-2B chain no no 0 0 0 0 By MS/MS By MS/MS 6.9 0.943 1 2 4 3 4 6 75.263 75.286 3;4 1.0108E-69 26250 20211116_3446_TMUAki_TMT10x_S_F7 229.38 215.33 36600000 59504000 463050 66178000 38690000 37285000 40502000 18684000 16385000 21430000 36738000 34081000 55548000 3109600 66609000 37166000 39348000 40242000 20018000 18446000 20817000 34810000 15 15 9 15 15 15 15 15 15 15 15 13505000 22349000 280690 23631000 12888000 19345000 15270000 9169600 7906600 9935600 13985000 12576000 20859000 1363300 23953000 12434000 19743000 15137000 9859400 8581500 9672000 13303000 6 6 5 6 6 6 6 6 6 6 6 23096000 37154000 182360 42547000 25802000 17941000 25232000 9514400 8478000 11495000 22753000 21505000 34689000 1746300 42656000 24732000 19605000 25105000 10158000 9864600 11145000 21508000 9 9 4 9 9 9 9 9 9 9 9 17142000000 7421600000 9720400000 4840 1668;2689 4510 26480;26481;26482;26483;26484;26485;26486;26487;26488;26489 31766;31767;31768;31769;31770;31771;31772;31773;31774;31775;31776;31777;31778;31779;31780 31775 15 ESEVAHVDQLFDDASR Unmodified 1816.8228 0.8227705 1761 Q15047;Q15047-2;Q15047-3 SETDB1 Histone-lysine N-methyltransferase SETDB1 yes no 0 0 0 0 By MS/MS 1 0 1 1 55.348 55.048 3 0.00018557 18167 20211116_3439_TMUAki_TMT10x_S_F1 78.166 61.943 1147100 2112800 0 2105600 1224600 1207000 1003900 1958000 1915400 1671100 1760700 1068000 1971500 91473 2135100 1168300 1301900 1058100 1944300 1903200 1643900 1703200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1147100 2112800 0 2105600 1224600 1207000 1003900 1958000 1915400 1671100 1760700 1068000 1971500 91473 2135100 1168300 1301900 1058100 1944300 1903200 1643900 1703200 1 1 0 1 1 1 1 1 1 1 1 90719000 0 90719000 4841 1761 4511 26490 31781 31781 1 ESFEGQMTEDNIEVGICNEAGFRR Oxidation (M) 2803.2178 0.21775664 807 P25787 PSMA2 Proteasome subunit alpha type-2 yes yes 0 0 1 1 By MS/MS 1 0 1 1 56.737 56.737 3 0.00059752 16770 20211116_3428_TMUAki_TMT10x_P_F1 65.111 57.413 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4842 807 4512 26491 31782 31782 958 1 ESFESQFLADTER Unmodified 1557.6947 0.69471644 1655 Q13616 CUL1 Cullin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 4 2 2 61.47 61.33 2;3 1.1479E-43 20711 20211116_3439_TMUAki_TMT10x_S_F1 280.17 219.26 9537400 16154000 31451 16465000 10783000 11539000 10181000 8893100 8757900 9299500 11407000 8879600 15074000 717750 16702000 10318000 12000000 10315000 9187600 9066000 9065600 10922000 3 3 1 3 3 3 3 3 3 3 3 3030100 4938400 0 4979400 3430300 5430500 3614000 2786600 2572800 2878700 3431700 2820800 4608200 197660 5083600 3289900 5445000 3624000 2969500 2693400 2807700 3283800 1 1 0 1 1 1 1 1 1 1 1 6507300 11215000 31451 11486000 7352500 6108700 6567500 6106500 6185100 6420800 7975700 6058700 10466000 520090 11618000 7028100 6554800 6690900 6218200 6372500 6258000 7638400 2 2 1 2 2 2 2 2 2 2 2 1016700000 487000000 529660000 4843 1655 4513 26492;26493;26494;26495 31783;31784;31785;31786;31787 31785 5 ESFNPESYELDK Unmodified 1456.6358 0.63580458 1127 P49903;P49903-2;P49903-4 SEPHS1 Selenide, water dikinase 1 yes no 0 0 0 0 By matching By MS/MS 3.25 0.829 1 1 2 3 1 58.578 58.463 3 0.001946 18363 20211116_3442_TMUAki_TMT10x_S_F4 68.809 53.607 3582700 6270400 59324 6092900 3694400 3564700 3106000 5300400 4540500 4769600 4973700 3336300 5850300 353890 6190500 3531200 3826400 3225700 5285600 4571700 4680100 4784500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3582700 6270400 59324 6092900 3694400 3564700 3106000 5300400 4540500 4769600 4973700 3336300 5850300 353890 6190500 3531200 3826400 3225700 5285600 4571700 4680100 4784500 1 1 1 1 1 1 1 1 1 1 1 1176000000 845490000 330510000 4844 1127 4514 26496;26497;26498;26499 31788 31788 1 ESFSLVQVQPGVDIIR Unmodified 1785.9625 0.96249887 1047 P46379;P46379-2;P46379-3;P46379-4;P46379-5 BAG6 Large proline-rich protein BAG6 yes no 0 0 0 0 By MS/MS By MS/MS 5.38 0.484 5 3 5 3 73.874 73.871 2;3 5.3226E-45 23281 20211116_3434_TMUAki_TMT10x_P_F6 206.74 152.77 16539000 27236000 82818 25680000 17995000 27019000 19267000 17396000 16675000 18575000 20455000 15399000 25408000 1337600 26327000 17283000 27226000 19397000 18208000 17212000 18092000 19615000 8 8 3 8 8 8 8 8 8 8 8 10046000 15893000 79992 15251000 10197000 19237000 11456000 10753000 10523000 11278000 12287000 9354300 14828000 850900 15663000 9810100 19161000 11526000 11376000 10809000 10993000 11798000 4 4 2 4 4 4 4 4 4 4 4 6493100 11342000 2825.3 10429000 7797700 7781600 7810500 6642900 6152100 7296400 8168000 6045100 10580000 486650 10664000 7472500 8065100 7870500 6831100 6402800 7099100 7816900 4 4 1 4 4 4 4 4 4 4 4 2958200000 1702800000 1255400000 4845 1047 4515 26500;26501;26502;26503;26504;26505;26506;26507 31789;31790;31791;31792;31793;31794;31795;31796;31797;31798 31794 10 ESFTLAEVPEK Unmodified 1248.6238 0.62378333 3378 yes no 0 0 0 0 By MS/MS By MS/MS 7.25 0.661 1 4 3 4 4 55.442 55.804 3 0.025363 18182 20211116_3446_TMUAki_TMT10x_S_F7 51.092 14.675 + 29063000 45843000 5758.7 47174000 35509000 41626000 31073000 43051000 36230000 38546000 39447000 27059000 42781000 2259000 47949000 33920000 42780000 31910000 43565000 36747000 37832000 37953000 8 8 3 8 8 8 8 8 8 8 8 10703000 15796000 707.22 17278000 15201000 23571000 13210000 15720000 13347000 13825000 13697000 9965700 14744000 926680 17615000 14524000 23448000 13508000 16323000 13584000 13580000 13202000 3 3 2 3 3 3 3 3 3 3 3 18360000 30047000 5051.5 29897000 20308000 18055000 17863000 27331000 22884000 24722000 25750000 17093000 28037000 1332400 30333000 19397000 19332000 18402000 27242000 23162000 24252000 24751000 5 5 1 5 5 5 5 5 5 5 5 6809500000 2651400000 4158100000 4846 3378 4516 26508;26509;26510;26511;26512;26513;26514;26515 31799;31800;31801;31802;31803 31802 5 ESGFSYPNFSLPAANGLSSGVGGGGGK Unmodified 2513.1823 0.18228106 1121 P49790;P49790-2;P49790-3 NUP153 Nuclear pore complex protein Nup153 yes no 0 0 0 0 By MS/MS 8 0 1 1 75.825 75.839 3 3.0305E-14 24693 20211116_3436_TMUAki_TMT10x_P_F8 108.32 93.554 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4847 1121 4517 26516 31804 31804 1 ESGLQAAHPNSIFLIDHAWTCR Unmodified 2522.2125 0.21247575 1688 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 58.628 58.856 4 1.1776E-07 19443 20211116_3446_TMUAki_TMT10x_S_F7 95.71 78.115 10501000 17015000 128160 16870000 10954000 14845000 10588000 12902000 13018000 13087000 14136000 9777700 15876000 872220 17190000 10494000 15204000 10834000 13222000 13177000 12774000 13602000 3 3 1 3 3 3 3 3 3 3 3 4161800 6580200 128160 6090000 4492700 8500200 4876900 5597600 5486400 5236600 5624500 3876000 6138200 469120 6283400 4325200 8445600 4945600 5827000 5559700 5129200 5421500 1 1 1 1 1 1 1 1 1 1 1 6339500 10435000 0 10780000 6461600 6344700 5711100 7304600 7531800 7850100 8511400 5901700 9737800 403100 10907000 6168700 6758700 5888700 7394700 7617400 7644400 8180400 2 2 0 2 2 2 2 2 2 2 2 1246900000 333010000 913840000 4848 1688 4518 26517;26518;26519 31805;31806;31807 31806 3 ESGPSGIETELR Unmodified 1273.615 0.61500956 2259 Q8NI36 WDR36 WD repeat-containing protein 36 yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 39.975 39.87 2 3.5967E-19 11514 20211116_3429_TMUAki_TMT10x_P_F2 219.5 175.15 990750 1534500 0 2119800 2424600 2003800 1150800 1919000 2167000 1374400 1738300 922320 1434100 82111 2119500 2291500 2046600 1265400 1939100 2144900 1364700 1690200 3 3 0 3 3 3 3 3 3 3 3 539290 819770 0 992380 2086500 1696500 839070 979080 1075800 733050 880260 502040 765580 54829 1010700 1968500 1668700 923660 1024300 1077200 726070 855210 1 1 0 1 1 1 1 1 1 1 1 451460 714750 0 1127400 338120 307330 311730 939890 1091200 641350 858050 420280 668480 27282 1108700 322980 377890 341710 914750 1067700 638680 834950 2 2 0 2 2 2 2 2 2 2 2 121380000 78947000 42433000 4849 2259 4519 26520;26521;26522 31808;31809;31810 31808 3 ESGVDIAAGNMLVK Oxidation (M) 1418.7075 0.70752973 766 P22102 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes yes 0 0 1 0 By MS/MS 3.67 0.471 1 2 3 51.442 51.511 3 0.00018507 15019 20211116_3431_TMUAki_TMT10x_P_F4 77.912 55.714 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4850 766 4520 26523;26524;26525 31811;31812;31813 31813 886 3 ESHTAVVYTEK Unmodified 1262.6143 0.61428128 1160 P51610;P51610-2;P51610-4;P51610-3 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 31.682 31.712 3 6.7235E-05 9654 20211116_3441_TMUAki_TMT10x_S_F3 87.667 69.936 664130 1133000 0 975250 1206900 1321800 823900 583820 834430 620030 952690 618250 1056600 48088 1011200 1146600 1308600 856070 631910 852630 604060 915370 1 1 0 1 1 1 1 1 1 1 1 664130 1133000 0 975250 1206900 1321800 823900 583820 834430 620030 952690 618250 1056600 48088 1011200 1146600 1308600 856070 631910 852630 604060 915370 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 63089000 63089000 0 4851 1160 4521 26526;26527 31814;31815 31815 2 ESIESEIR Unmodified 961.47164 0.47163978 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 By MS/MS 1.5 0.5 1 1 2 35.188 35.204 2 0.0070495 10369 20211116_3439_TMUAki_TMT10x_S_F1 85.212 42.212 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4852 1235 4522 26528;26529 31816;31817 31816 2 ESIESEIRR Unmodified 1117.5728 0.57275081 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 32.146 32.036 3 4.8709E-11 9821 20211116_3441_TMUAki_TMT10x_S_F3 228.05 161.02 5677100 8497900 26849 8605900 9090600 7586900 5558700 4536300 4959200 4457300 6637900 5286200 7929900 543500 8756600 8629300 7723300 5804600 4763800 5131000 4356500 6351400 4 4 4 4 4 4 4 4 4 4 4 3970200 5901400 18006 5829200 7410400 6102800 3667200 3069000 3346900 2927200 4461400 3696800 5506400 394120 5956000 7012400 6132100 3905600 3269200 3458500 2864700 4269300 2 2 2 2 2 2 2 2 2 2 2 1706900 2596500 8842.5 2776700 1680200 1484100 1891500 1467300 1612300 1530200 2176400 1589400 2423500 149380 2800600 1616900 1591200 1898900 1494600 1672500 1491900 2082100 2 2 2 2 2 2 2 2 2 2 2 552770000 398380000 154390000 4853 1235 4523 26530;26531;26532;26533 31818;31819;31820;31821 31821 4 ESILGGVLK Unmodified 914.54368 0.54368251 2525 Q96N67;Q96N67-3;Q96N67-2;Q96N67-4;Q96N67-5;Q96N67-6 DOCK7 Dedicator of cytokinesis protein 7 yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 46.8 46.964 2 0.0081021 13490 20211116_3442_TMUAki_TMT10x_S_F4 73.248 27.232 14810000 24853000 60672 28166000 18383000 20402000 14539000 20962000 23045000 18917000 23082000 13789000 23203000 1280100 28384000 17530000 21276000 15212000 21223000 23073000 18560000 22265000 4 4 1 4 4 4 4 4 4 4 4 4192700 6746400 60672 8531200 9378400 10952000 5744300 6190600 6281300 4964000 6369900 3904200 6301800 476770 8613300 8904800 10901000 6033300 6497700 6369800 4898600 6142100 1 1 1 1 1 1 1 1 1 1 1 10617000 18107000 0 19634000 9004500 9450600 8794500 14772000 16764000 13953000 16712000 9884900 16901000 803330 19770000 8625100 10375000 9178300 14726000 16704000 13661000 16123000 3 3 0 3 3 3 3 3 3 3 3 485330000 147100000 338240000 4854 2525 4524 26534;26535;26536 31822;31823;31824;31825 31823 4 ESIVDVEGVVR Unmodified 1200.635 0.63501672 678 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 54.078 53.862 2 2.4231E-08 15637 20211116_3428_TMUAki_TMT10x_P_F1 153.97 110.97 26351000 42120000 72122 46205000 38880000 47260000 30596000 34723000 34821000 32235000 37663000 24536000 39318000 2328600 46864000 37070000 47799000 31598000 35862000 35340000 31585000 36244000 8 8 2 8 8 8 8 8 8 8 8 17222000 26378000 59671 28651000 30266000 39343000 22396000 22767000 22361000 20949000 23821000 16035000 24622000 1620400 29228000 28823000 39048000 23128000 23930000 22802000 20535000 22934000 5 5 1 5 5 5 5 5 5 5 5 9129800 15742000 12451 17554000 8614300 7917300 8199300 11956000 12460000 11286000 13841000 8500400 14696000 708250 17635000 8246700 8750800 8470500 11932000 12538000 11050000 13309000 3 3 1 3 3 3 3 3 3 3 3 2197200000 1278200000 918970000 4855 678 4525 26537;26538;26539;26540;26541;26542 31826;31827;31828;31829;31830;31831;31832;31833 31827 8 ESKDPADETEAD Unmodified 1305.5208 0.5208344 698 P16949 STMN1 Stathmin yes yes 0 0 0 1 By MS/MS 1 0 1 1 31.704 31.734 3 0.003668 8627 20211116_3439_TMUAki_TMT10x_S_F1 63.76 56.907 209110 334730 4927.8 335040 197140 199530 221880 194620 216040 188270 251370 194740 312340 21761 339750 189950 211520 223590 197930 221290 184140 241390 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 209110 334730 4927.8 335040 197140 199530 221880 194620 216040 188270 251370 194740 312340 21761 339750 189950 211520 223590 197930 221290 184140 241390 1 1 1 1 1 1 1 1 1 1 1 21765000 0 21765000 4856 698 4526 26543 31834 31834 1 ESKKEDLVFIFWAPESAPLK Unmodified 2333.2307 0.2307348 787;3229 P23528;Q9Y281;Q9Y281-3 CFL1;CFL2 Cofilin-1;Cofilin-2 no no 0 0 0 2 By MS/MS By MS/MS 7.4 0.8 1 1 3 2 3 80.526 80.524 4 1.233E-06 27323 20211116_3446_TMUAki_TMT10x_S_F7 94.384 80.075 26261000 44700000 239130 35722000 31421000 26324000 31617000 19344000 18039000 21672000 29058000 24453000 41676000 2423200 36936000 30144000 27240000 31640000 20089000 19337000 21070000 27690000 7 7 4 7 7 7 7 7 7 7 7 362520 564460 0 489350 366530 746970 465210 316360 361560 389950 424610 337520 526420 26856 508370 353720 735400 463520 345580 374600 377810 407660 2 2 0 2 2 2 2 2 2 2 2 25898000 44135000 239130 35232000 31054000 25577000 31152000 19027000 17677000 21282000 28633000 24115000 41150000 2396300 36427000 29790000 26504000 31177000 19744000 18962000 20692000 27282000 5 5 4 5 5 5 5 5 5 5 5 6132500000 23218000 6109200000 4857 787;3229 4527 26544;26545;26546;26547;26548 31835;31836;31837;31838;31839;31840;31841 31840 7 ESLAEEHEGLVGEGQR Unmodified 1738.8122 0.81220581 1558 Q10570 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 0 0 0 0 By MS/MS 1.5 0.5 1 1 2 34.586 34.363 3 1.8306E-07 9270 20211116_3429_TMUAki_TMT10x_P_F2 107.75 77.948 391170 613530 17984 672270 950200 850700 557760 473420 547420 436410 597750 364350 572710 57021 684350 902320 847150 585960 499280 559140 427750 575070 1 1 1 1 1 1 1 1 1 1 1 391170 613530 17984 672270 950200 850700 557760 473420 547420 436410 597750 364350 572710 57021 684350 902320 847150 585960 499280 559140 427750 575070 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72847000 72847000 0 4858 1558 4528 26549;26550 31842;31843 31843 2 ESLCDSPHQNLSRPLLENK Unmodified 2236.0906 0.090629281 156 O15042;O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 0 0 0 1 By MS/MS 6 0 1 1 40.264 40.281 4 2.1226E-12 9645 20211116_3434_TMUAki_TMT10x_P_F6 134.06 130.93 1713900 2583500 34298 3434500 5112900 5535200 2343100 2378000 2865400 2151400 2483500 1596000 2413800 211800 3475000 4834300 5438400 2537700 2570300 2878700 2110500 2407600 2 2 1 2 2 2 2 2 2 2 2 1713900 2583500 34298 3434500 5112900 5535200 2343100 2378000 2865400 2151400 2483500 1596000 2413800 211800 3475000 4834300 5438400 2537700 2570300 2878700 2110500 2407600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 168510000 168510000 0 4859 156 4529 26551 31844;31845 31845 2 ESLEALLQR Unmodified 1057.5768 0.57677356 395 O94906;O94906-2 PRPF6 Pre-mRNA-processing factor 6 yes no 0 0 0 0 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 60.728 60.687 2 0.00084204 18771 20211116_3431_TMUAki_TMT10x_P_F4 110.38 45.063 17905000 29145000 150920 30203000 21632000 27372000 17475000 21699000 21178000 21653000 23611000 16673000 27200000 1677300 30695000 20646000 27932000 18058000 22347000 21469000 21149000 22701000 4 4 4 4 4 4 4 4 4 4 4 8438500 13715000 110450 14782000 12745000 18307000 8515100 10229000 9964900 10469000 11187000 7857900 12802000 862860 15058000 12121000 18251000 8903300 10815000 10118000 10215000 10754000 2 2 2 2 2 2 2 2 2 2 2 9466700 15430000 40464 15421000 8886900 9065000 8960100 11470000 11213000 11184000 12424000 8814800 14398000 814450 15637000 8525400 9680900 9154500 11532000 11351000 10934000 11947000 2 2 2 2 2 2 2 2 2 2 2 1749500000 725190000 1024300000 4860 395 4530 26552;26553;26554;26555 31846;31847;31848 31846 3 ESLIDGIKR Unmodified 1029.5819 0.58185894 786 P23526;P23526-2 AHCY Adenosylhomocysteinase yes no 0 0 0 1 By MS/MS 5 0 1 1 43.866 43.999 3 0.00048041 11112 20211116_3444_TMUAki_TMT10x_S_F5 84.817 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4861 786 4531 26556 31849 31849 1 ESLKPAAKPLPSK Unmodified 1364.8028 0.80275075 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 2 By MS/MS 2 0 1 1 39.07 38.821 4 0.0043273 11031 20211116_3429_TMUAki_TMT10x_P_F2 63.682 44.85 5578100 8703200 39330 7536300 10795000 12607000 7611000 5383000 6750800 5967200 7000100 5194000 8116600 572190 7846500 10274000 12368000 7860000 5855100 6914200 5803800 6745000 2 2 2 2 2 2 2 2 2 2 2 5578100 8703200 39330 7536300 10795000 12607000 7611000 5383000 6750800 5967200 7000100 5194000 8116600 572190 7846500 10274000 12368000 7860000 5855100 6914200 5803800 6745000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 209810000 209810000 0 4862 1057 4532 26557 31850;31851 31850 2 ESLMNQSRWNSGLR Unmodified 1676.8053 0.80528672 2201 Q8N668;Q8N668-2 COMMD1 COMM domain-containing protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 55.051 55.273 3 0.028121 17388 20211116_3435_TMUAki_TMT10x_P_F7 45.79 21.719 48840000 78516000 0 85867000 64207000 69631000 43136000 42166000 42660000 39157000 54153000 45471000 73291000 3779600 86837000 61003000 71319000 44842000 44167000 43827000 38367000 51884000 5 5 0 5 5 5 5 5 5 5 5 29329000 46987000 0 52132000 48134000 56314000 28368000 24203000 24753000 22428000 31767000 27306000 43863000 2449700 52882000 45641000 56389000 29696000 26175000 25589000 21977000 30427000 3 3 0 3 3 3 3 3 3 3 3 19511000 31529000 0 33736000 16072000 13317000 14768000 17963000 17907000 16729000 22386000 18165000 29429000 1329900 33955000 15363000 14930000 15145000 17992000 18238000 16389000 21456000 2 2 0 2 2 2 2 2 2 2 2 4808100000 4090400000 717730000 4863 2201 4533 26558;26559;26560;26561 31852 31852 1 ESLNASIVDAINQAADCWGIR Unmodified 2302.1012 0.10119397 3148 Q9UJZ1 STOML2 Stomatin-like protein 2, mitochondrial yes yes 0 0 0 0 By matching By MS/MS 7 0 2 1 1 81.578 81.602 3 3.2848E-10 28922 20211116_3446_TMUAki_TMT10x_S_F7 106.86 90.921 618470 959690 0 955110 701280 673970 666890 468640 547260 517610 860430 575860 895480 0 970490 671560 699320 674550 488310 573090 503510 820330 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 618470 959690 0 955110 701280 673970 666890 468640 547260 517610 860430 575860 895480 0 970490 671560 699320 674550 488310 573090 503510 820330 1 1 0 1 1 1 1 1 1 1 1 269650000 35334000 234310000 4864 3148 4534 26562;26563 31853 31853 1 ESLNLEDQIESDESELK Unmodified 1976.9062 0.90622536 2733 Q9BZD4 NUF2 Kinetochore protein Nuf2 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 71.361 71.286 3 3.5633E-08 22700 20211116_3428_TMUAki_TMT10x_P_F1 116.82 98.678 9171900 16745000 173620 15836000 10637000 12756000 10860000 10060000 10685000 10776000 12212000 8541200 15622000 942740 16174000 10215000 13124000 10998000 10386000 10932000 10495000 11733000 4 4 4 4 4 4 4 4 4 4 4 2451000 4345800 9022.8 3947800 2580800 5101200 3024100 2406500 2953700 2807200 3071800 2282200 4053600 213430 4072800 2486300 5065000 3042100 2594700 3012200 2725200 2959600 1 1 1 1 1 1 1 1 1 1 1 6720900 12400000 164600 11889000 8056000 7654400 7835600 7653500 7731300 7968500 9139800 6259000 11568000 729310 12101000 7728900 8058900 7956300 7791000 7919800 7769500 8773300 3 3 3 3 3 3 3 3 3 3 3 984130000 502960000 481160000 4865 2733 4535 26564;26565 31854;31855;31856;31857 31854 4 ESLQQMAEVTR Oxidation (M) 1306.6187 0.61871473 666 P14314;P14314-2 PRKCSH Glucosidase 2 subunit beta yes no 0 0 1 0 By MS/MS By MS/MS 2.33 1.11 2 1 2 1 3 3 32.989 32.905 2 4.681E-06 10123 20211116_3441_TMUAki_TMT10x_S_F3 122.86 87.566 704340 1120200 2965.7 1188800 1808800 1722600 1065700 992190 1061400 849890 1127100 655690 1045600 51292 1215900 1714700 1705500 1119700 1041400 1082300 835910 1085200 5 5 1 5 5 5 5 5 5 5 5 465300 751220 2965.7 775420 1571400 1497000 855030 669350 733310 587420 755070 433140 701060 38605 800140 1487900 1461900 900980 719870 752120 577080 727720 3 3 1 3 3 3 3 3 3 3 3 239050 369010 0 413330 237450 225590 210680 322840 328070 262480 372020 222550 344490 12688 415730 226760 243580 218740 321520 330180 258830 357510 2 2 0 2 2 2 2 2 2 2 2 133480000 107190000 26289000 4866 666 4536 26566;26567;26568;26569;26570;26571 31858;31859;31860;31861;31862;31863 31862 728 6 ESLQQMAEVTR Unmodified 1290.6238 0.6238001 666 P14314;P14314-2 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 3.75 0.433 1 3 3 1 45.986 46.094 2 3.0974E-20 13201 20211116_3442_TMUAki_TMT10x_S_F4 237.84 166.15 1679700 2572900 6961 3143600 2716500 2273100 1800400 1845000 1647400 1562700 2311900 1563900 2403000 139720 3153600 2580800 2359700 1869400 1889000 1706200 1537800 2209700 2 2 1 2 2 2 2 2 2 2 2 733480 1028300 6961 1283600 1980500 1654400 1168200 762050 793250 661630 929430 683000 960450 84764 1297000 1879000 1642500 1215800 816830 828240 650320 892380 1 1 1 1 1 1 1 1 1 1 1 946250 1544700 0 1859900 735980 618670 632230 1083000 854130 901050 1382500 880890 1442500 54952 1856600 701750 717260 653600 1072200 877970 887500 1317300 1 1 0 1 1 1 1 1 1 1 1 317970000 231150000 86820000 4867 666 4536 26572;26573;26574;26575 31864;31865;31866 31866 3 ESLVVNYEDLAAR Unmodified 1477.7413 0.7412727 1114 P49736 MCM2 DNA replication licensing factor MCM2 yes yes 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 61.369 61.172 2 8.7115E-44 20615 20211116_3430_TMUAki_TMT10x_P_F3 284.1 155.82 50351000 86200000 293320 84377000 57001000 76638000 55589000 54891000 53881000 57339000 63543000 46882000 80427000 4195300 86092000 54615000 78062000 56407000 56981000 55232000 55899000 60998000 9 9 5 9 9 9 9 9 9 9 9 27527000 45202000 184430 43632000 32790000 54355000 32349000 28869000 28668000 30696000 32887000 25631000 42172000 2329700 44783000 31428000 54139000 32722000 30692000 29475000 29904000 31594000 5 5 3 5 5 5 5 5 5 5 5 22824000 40998000 108880 40745000 24211000 22283000 23240000 26023000 25213000 26643000 30656000 21251000 38254000 1865700 41308000 23188000 23923000 23685000 26288000 25757000 25996000 29404000 4 4 2 4 4 4 4 4 4 4 4 5594800000 3636200000 1958600000 4868 1114 4537 26576;26577;26578;26579;26580 31867;31868;31869;31870;31871;31872;31873;31874;31875 31870 9 ESLWPFLIDKR Unmodified 1402.7609 0.76088593 3036 Q9NZL9;Q9NZL9-2;Q9NZL9-4 MAT2B Methionine adenosyltransferase 2 subunit beta yes no 0 0 0 1 By MS/MS 2 0 1 1 73.942 73.852 3 0.00011359 24046 20211116_3440_TMUAki_TMT10x_S_F2 97.594 64.97 4188800 6577400 9485.8 6741000 3949600 3905900 4788000 2745700 2513200 3211500 4394100 3900200 6138000 352770 6823000 3808700 4127900 4742400 2864200 2723100 3117300 4180600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4188800 6577400 9485.8 6741000 3949600 3905900 4788000 2745700 2513200 3211500 4394100 3900200 6138000 352770 6823000 3808700 4127900 4742400 2864200 2723100 3117300 4180600 1 1 1 1 1 1 1 1 1 1 1 422660000 0 422660000 4869 3036 4538 26581 31876 31876 1 ESMATGSIPITVR Oxidation (M) 1376.697 0.69696505 1114 P49736 MCM2 DNA replication licensing factor MCM2 yes yes 0 0 1 0 By matching By MS/MS 4 0 2 1 1 41.619 41.76 2 5.7391E-09 11359 20211116_3442_TMUAki_TMT10x_S_F4 133.85 104.08 1287800 2057200 308.53 2674200 1122000 989190 1072500 2007900 2568700 1533200 2240200 1199000 1921900 92396 2659300 1073800 1134500 1136800 1975800 2536100 1516900 2171200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1287800 2057200 308.53 2674200 1122000 989190 1072500 2007900 2568700 1533200 2240200 1199000 1921900 92396 2659300 1073800 1134500 1136800 1975800 2536100 1516900 2171200 2 2 1 2 2 2 2 2 2 2 2 308400000 187170000 121230000 4870 1114 4539 26582;26583 31877;31878 31878 1479 2 ESMQMQVEAER Oxidation (M) 1352.57 0.57004997 3148 Q9UJZ1 STOML2 Stomatin-like protein 2, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 30.342 30.374 2 8.9983E-14 7772 20211116_3429_TMUAki_TMT10x_P_F2 146.71 128.89 218050 304200 0 396430 240630 139390 174230 59341 70884 66536 189590 203000 284200 14167 394070 228780 156060 177000 64589 80847 64686 179220 2 2 0 2 2 2 2 2 2 2 2 98470 141430 0 179230 144700 88607 87267 26777 29724 30914 85778 91668 132110 6688.2 178820 137170 94467 89740 30469 34746 30022 81012 1 1 0 1 1 1 1 1 1 1 1 119580 162770 0 217200 95922 50782 86965 32564 41160 35622 103810 111330 152090 7478.4 215240 91613 61589 87263 34120 46101 34664 98207 1 1 0 1 1 1 1 1 1 1 1 13796000 7992700 5803600 4871 3148 4540 26584;26585;26586;26587 31879;31880;31881 31880 3162 3 ESMQMQVEAER Unmodified 1336.5751 0.57513535 3148 Q9UJZ1 STOML2 Stomatin-like protein 2, mitochondrial yes yes 0 0 0 0 By MS/MS 2 0 1 1 34.487 34.58 2 4.0953E-14 8004 20211116_3440_TMUAki_TMT10x_S_F2 153.54 122.46 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4872 3148 4540 26588 31882 31882 1 ESMQMQVEAERR Oxidation (M) 1508.6712 0.671161 3148 Q9UJZ1 STOML2 Stomatin-like protein 2, mitochondrial yes yes 0 0 1 1 By MS/MS 2 0 1 1 27.709 27.472 3 0.022059 6555 20211116_3429_TMUAki_TMT10x_P_F2 56.139 41.167 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4873 3148 4541 26589 31883 31883 3162 1 ESNTVFSFLGLKPR Unmodified 1593.8515 0.85149185 3140 Q9UJC5 SH3BGRL2 SH3 domain-binding glutamic acid-rich-like protein 2 yes yes 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 72.445 72.307 3 4.6571E-33 23952 20211116_3442_TMUAki_TMT10x_S_F4 221.59 199.5 12591000 20939000 36768 19871000 16497000 17735000 15385000 14993000 13642000 14602000 15801000 11723000 19535000 1086300 20316000 15789000 18137000 15610000 15371000 14032000 14278000 15176000 4 4 1 4 4 4 4 4 4 4 4 4134800 6485600 0 6390000 4683600 8236500 4963700 5054100 4503800 4727800 4838300 3849700 6051400 329800 6553200 4496500 8205400 5006000 5289500 4613900 4630900 4657000 1 1 0 1 1 1 1 1 1 1 1 8456000 14454000 36768 13481000 11813000 9498300 10421000 9939300 9138600 9874700 10963000 7873500 13483000 756470 13762000 11293000 9931800 10604000 10081000 9417800 9646800 10519000 3 3 1 3 3 3 3 3 3 3 3 1438700000 664140000 774530000 4874 3140 4542 26590;26591;26592 31884;31885;31886;31887 31887 4 ESPESEGPIYEGLIL Unmodified 1631.793 0.7930335 2541 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 0 0 0 0 By MS/MS By MS/MS 1.75 0.661 3 4 1 1 7 58.607 58.573 2 1.3614E-20 26368 20211116_3428_TMUAki_TMT10x_P_F1 179.51 159.75 6234800 10455000 60608 9582100 7620700 8777000 7565300 6089900 5889500 6826200 7999900 5805700 9752100 592040 9824900 7309300 8930700 7624800 6349400 6139700 6636500 7651900 5 5 4 5 5 5 5 5 5 5 5 2135300 3735800 18285 3205400 2222300 4233700 2411400 2170600 2114800 2248000 2702300 1988300 3483900 195290 3322800 2136700 4203200 2426900 2313400 2185300 2192300 2588600 1 1 1 1 1 1 1 1 1 1 1 4099500 6718900 42323 6376700 5398400 4543300 5154000 3919200 3774700 4578200 5297600 3817400 6268200 396750 6502100 5172700 4727400 5198000 4036000 3954500 4444200 5063300 4 4 3 4 4 4 4 4 4 4 4 3802100000 1946000000 1856100000 4875 2541 4543 26593;26594;26595;26596;26597;26598;26599;26600 31888;31889;31890;31891;31892;31893;31894 31888 7 ESPQEIAR Unmodified 928.46141 0.46140945 1473 Q00796 SORD Sorbitol dehydrogenase yes yes 0 0 0 0 By matching By MS/MS 1 0 2 1 1 29.173 29.213 2 0.025926 7629 20211116_3439_TMUAki_TMT10x_S_F1 66.27 38.096 81429 139780 0 132180 102110 78189 101630 69052 81303 70975 108990 75807 130400 5621.3 134570 97799 82778 102480 70726 84583 69239 104290 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 81429 139780 0 132180 102110 78189 101630 69052 81303 70975 108990 75807 130400 5621.3 134570 97799 82778 102480 70726 84583 69239 104290 1 1 0 1 1 1 1 1 1 1 1 4599500 1540800 3058800 4876 1473 4544 26601;26602 31895 31895 1 ESPRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGRR Unmodified 3682.7684 0.76839053 2013 Q6PKG0 LARP1 La-related protein 1 yes yes 0 0 0 2 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 44.691 44.687 4 2.6263E-224 12630 20211116_3442_TMUAki_TMT10x_S_F4 384.1 370.14 769670 1494800 12936 1472400 1058300 1337300 825640 1169900 1290400 1164500 1143300 716690 1394700 75156 1501700 1009400 1366900 864030 1197800 1287200 1137600 1107400 3 3 2 3 3 3 3 3 3 3 3 283610 565690 7127.3 565990 624690 977100 528410 387800 535390 423230 406190 264120 527850 34933 583530 596990 956800 541240 425090 539780 411890 395830 1 1 1 1 1 1 1 1 1 1 1 486050 929130 5809.2 906410 433600 360190 297230 782150 755010 741300 737110 452570 866890 40223 918130 412370 410110 322790 772720 747420 725670 711620 2 2 1 2 2 2 2 2 2 2 2 709380000 325900000 383480000 4877 2013 4545 26603;26604;26605 31896;31897;31898 31898 3 ESQAKDVIEEYFK Unmodified 1584.7672 0.7671531 801 P25398 RPS12 40S ribosomal protein S12 yes yes 0 0 0 1 By MS/MS By MS/MS 4 1.41 2 2 2 2 2 5 5 66.931 66.851 3 4.2713E-13 24101 20211116_3441_TMUAki_TMT10x_S_F3 141.34 107.72 41427000 83300000 646520 50578000 97757000 184990000 83611000 270110000 177040000 180070000 125010000 38574000 77606000 4334400 55919000 93385000 182080000 88442000 267640000 174170000 179580000 122200000 11 11 8 11 11 11 11 11 11 11 11 21897000 42831000 429270 27753000 44844000 129950000 58058000 139620000 87221000 90257000 62785000 20389000 39909000 2211100 30906000 43336000 126300000 59103000 139990000 86589000 90184000 61323000 6 6 5 6 6 6 6 6 6 6 6 19530000 40470000 217250 22825000 52912000 55044000 25553000 130490000 89815000 89814000 62222000 18185000 37696000 2123300 25014000 50049000 55784000 29339000 127650000 87580000 89392000 60877000 5 5 3 5 5 5 5 5 5 5 5 6957800000 4774000000 2183800000 4878 801 4546 26606;26607;26608;26609;26610;26611;26612;26613;26614;26615 31899;31900;31901;31902;31903;31904;31905;31906;31907;31908;31909;31910;31911;31912 31906 14 ESQFLKEELVAAVEDVRK Unmodified 2089.1055 0.10553429 922 P35221;P35221-2 CTNNA1 Catenin alpha-1 yes no 0 0 0 2 By MS/MS By matching 6 0 2 1 1 76.874 76.844 4 0.0084187 24474 20211116_3434_TMUAki_TMT10x_P_F6 57.366 42.672 6832400 10645000 136580 9644100 6013600 13997000 7991000 7175600 6985300 7102300 7675900 6362700 9929500 682280 9974400 5824100 13837000 7971100 7637700 7174900 6939500 7383300 1 1 1 1 1 1 1 1 1 1 1 6832400 10645000 136580 9644100 6013600 13997000 7991000 7175600 6985300 7102300 7675900 6362700 9929500 682280 9974400 5824100 13837000 7971100 7637700 7174900 6939500 7383300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1191400000 546210000 645160000 4879 922 4547 26616;26617 31913 31913 1 ESQKVELSESR Unmodified 1290.6416 0.64155866 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 1 By MS/MS By MS/MS 2.67 1.25 1 1 1 1 2 31.183 31.126 3 8.3424E-08 9483 20211116_3441_TMUAki_TMT10x_S_F3 140.53 105.33 5873000 9841300 55152 8903800 5989300 6963600 6663300 3761100 3856700 4075700 6570500 5468700 9179500 534980 9120500 5762800 7141800 6636800 3995100 4142700 3967600 6254300 5 5 2 5 5 5 5 5 5 5 5 1877900 2867100 0 2550000 2151600 2960600 1899000 1180600 1188000 1335100 2035000 1748500 2674200 158490 2630000 2056700 2950700 1917400 1294800 1269700 1297600 1936900 1 1 0 1 1 1 1 1 1 1 1 3995100 6974200 55152 6353700 3837600 4003000 4764300 2580600 2668700 2740600 4535500 3720200 6505300 376500 6490500 3706100 4191100 4719400 2700300 2872900 2670000 4317500 4 4 2 4 4 4 4 4 4 4 4 277670000 77303000 200370000 4880 799 4548 26618;26619;26620 31914;31915;31916;31917;31918 31918 5 ESQSHPGDFVLSVR Unmodified 1556.7583 0.75831975 1523 Q06124;Q06124-3;Q06124-1 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 0 0 0 0 By MS/MS 3 0 1 1 39.796 39.85 3 0.02588 12015 20211116_3430_TMUAki_TMT10x_P_F3 42.951 28.261 226290 366100 0 388180 540920 552950 302810 298440 303280 246700 328420 210700 341690 22297 396910 512610 547430 319620 314730 309400 243080 316040 1 1 0 1 1 1 1 1 1 1 1 226290 366100 0 388180 540920 552950 302810 298440 303280 246700 328420 210700 341690 22297 396910 512610 547430 319620 314730 309400 243080 316040 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11205000 11205000 0 4881 1523 4549 26621 31919 31919 1 ESRPESIIIYR Unmodified 1361.7303 0.73031409 2485 Q96HH4 TMEM169 Transmembrane protein 169 yes yes 0 0 0 1 By MS/MS 5 0 1 1 37.862 38.008 3 1.4662E-06 8706 20211116_3444_TMUAki_TMT10x_S_F5 125.54 98.06 1813600 2837000 32570 3600900 1603200 1307000 1618500 1800800 2028200 1715700 2395300 1688900 2650100 177770 3585300 1539600 1484100 1653600 1803500 2058500 1679200 2299300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1813600 2837000 32570 3600900 1603200 1307000 1618500 1800800 2028200 1715700 2395300 1688900 2650100 177770 3585300 1539600 1484100 1653600 1803500 2058500 1679200 2299300 2 2 2 2 2 2 2 2 2 2 2 49542000 0 49542000 4882 2485 4550 26622 31920;31921 31920 2 ESRQEEMNSQQEEEEMETDAR 2 Oxidation (M) 2616.0188 0.018782064 1633 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 2 1 By MS/MS 1 0 1 1 26.889 26.889 3 0.0329 4758 20211116_3428_TMUAki_TMT10x_P_F1 42.172 38.19 3759.5 10375 0 19960 40905 25616 17266 3241.2 3524.6 3618.4 15734 3500.5 9716.5 0 19770 38628 25244 18324 4435.9 4620.2 3518.4 14800 1 1 0 1 1 1 1 1 1 1 1 3759.5 10375 0 19960 40905 25616 17266 3241.2 3524.6 3618.4 15734 3500.5 9716.5 0 19770 38628 25244 18324 4435.9 4620.2 3518.4 14800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2845300 2845300 0 4883 1633 4551 26623 31922 31922 2183;2184 1 ESRQEEMNSQQEEEEMETDAR Oxidation (M) 2600.0239 0.023867442 1633 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 1 1 By MS/MS 1 0 1 1 27.945 27.945 3 5.0094E-10 5077 20211116_3428_TMUAki_TMT10x_P_F1 107.45 104.24 26767 28446 0 73061 181340 70506 53253 16593 19266 10558 44739 24922 26709 0 71345 170650 70773 59662 19411 21991 10560 42370 3 3 0 3 3 3 3 3 3 3 3 26767 28446 0 73061 181340 70506 53253 16593 19266 10558 44739 24922 26709 0 71345 170650 70773 59662 19411 21991 10560 42370 3 3 0 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5404600 5404600 0 4884 1633 4551 26624 31923;31924;31925 31925 2183;2184 3 ESRQEEMNSQQEEEEMETDAR Unmodified 2584.029 0.02895282 1633 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 0 1 By MS/MS 1 0 1 1 33.373 33.373 3 3.8461E-181 7312 20211116_3428_TMUAki_TMT10x_P_F1 420.27 396.24 168210 200530 1642.5 617800 923020 335050 404050 49682 33115 38368 234250 156640 188670 26048 596560 872080 352350 425500 64576 57058 37939 219740 1 1 1 1 1 1 1 1 1 1 1 168210 200530 1642.5 617800 923020 335050 404050 49682 33115 38368 234250 156640 188670 26048 596560 872080 352350 425500 64576 57058 37939 219740 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50273000 50273000 0 4885 1633 4551 26625 31926 31926 1 ESSKFPFGISPAQSHR Unmodified 1773.8798 0.87983187 111 O14497;O14497-3;O14497-2 ARID1A AT-rich interactive domain-containing protein 1A yes no 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 43.638 43.515 4 0.0060828 13053 20211116_3429_TMUAki_TMT10x_P_F2 59.372 51.397 2359000 3724700 0 4294200 6513400 6324500 3766400 4090000 4023500 3031400 3646900 2196200 3477600 222760 4370900 6174300 6267500 3972000 4239500 4068700 3004200 3529700 2 2 0 2 2 2 2 2 2 2 2 2359000 3724700 0 4294200 6513400 6324500 3766400 4090000 4023500 3031400 3646900 2196200 3477600 222760 4370900 6174300 6267500 3972000 4239500 4068700 3004200 3529700 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 125010000 125010000 0 4886 111 4552 26626;26627 31927;31928 31927 2 ESSLILAVTPANMDLANSDALK Oxidation (M) 2288.157 0.15697751 1140 P50570;P50570-3;P50570-2;P50570-5;P50570-4 DNM2 Dynamin-2 yes no 0 0 1 0 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 75.48 75.474 3 7.1879E-06 23991 20211116_3444_TMUAki_TMT10x_S_F5 83.063 70.006 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4887 1140 4553 26628;26629;26630 31929;31930;31931 31930 1505 3 ESSPLYSPTFSDSTSAVK Unmodified 1901.8895 0.88945308 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.14 0.833 2 2 3 3 4 57.126 57.249 3 1.3226E-17 17315 20211116_3431_TMUAki_TMT10x_P_F4 151.48 129.33 10323000 19200000 176390 22243000 22141000 27387000 14689000 18711000 19431000 17421000 17338000 9612500 17927000 961180 22554000 21051000 27388000 15436000 19423000 19486000 17068000 16790000 6 6 4 6 6 6 6 6 6 6 6 8440900 15372000 176390 17807000 20140000 25597000 13196000 14455000 15203000 13662000 13469000 7860700 14352000 841520 18110000 19147000 25346000 13810000 15235000 15317000 13376000 13047000 5 5 4 5 5 5 5 5 5 5 5 1881800 3828200 0 4436300 2000900 1789900 1492800 4256400 4228900 3758900 3869400 1751800 3574400 119660 4443200 1903400 2042100 1625500 4188200 4169700 3691600 3743800 1 1 0 1 1 1 1 1 1 1 1 3070800000 2016700000 1054100000 4888 1057 4554 26631;26632;26633;26634;26635;26636;26637 31932;31933;31934;31935;31936;31937;31938;31939 31932 8 ESSSIYISK Unmodified 1012.5077 0.50769094 283 O60701;O60701-3;O60701-2 UGDH UDP-glucose 6-dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 42.072 42.146 2 2.1805E-05 11522 20211116_3442_TMUAki_TMT10x_S_F4 143.7 99.308 1541100 2543900 0 2733800 3345400 3676600 2272900 2104200 2369000 1902200 2321000 1434700 2374500 126140 2789600 3179000 3652000 2364500 2212700 2404200 1866100 2240500 1 1 0 1 1 1 1 1 1 1 1 1541100 2543900 0 2733800 3345400 3676600 2272900 2104200 2369000 1902200 2321000 1434700 2374500 126140 2789600 3179000 3652000 2364500 2212700 2404200 1866100 2240500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 85123000 85123000 0 4889 283 4555 26638;26639;26640 31940;31941;31942 31941 3 ESSTVFELKR Unmodified 1194.6245 0.62445203 1794 Q15370;Q15370-2 TCEB2 Transcription elongation factor B polypeptide 2 yes no 0 0 0 1 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 41.866 41.983 3 4.7074E-09 10463 20211116_3445_TMUAki_TMT10x_S_F6 176.48 89.226 18654000 29488000 76855 32635000 31636000 27624000 20168000 20921000 21689000 18509000 24588000 17368000 27527000 1668000 32996000 30042000 28300000 21104000 21537000 22101000 18176000 23629000 9 9 4 9 9 9 9 9 9 9 9 9776400 15409000 20939 17536000 22217000 19611000 11111000 11121000 11281000 9817700 12848000 9102300 14386000 914630 17770000 21019000 19659000 11856000 11697000 11525000 9642200 12345000 4 4 1 4 4 4 4 4 4 4 4 8877300 14079000 55917 15099000 9419600 8013100 9056900 9799300 10408000 8691200 11740000 8265700 13141000 753360 15226000 9023500 8640400 9247600 9840000 10576000 8533900 11284000 5 5 3 5 5 5 5 5 5 5 5 1554000000 1043500000 510450000 4890 1794 4556 26641;26642;26643;26644;26645;26646 31943;31944;31945;31946;31947;31948;31949;31950 31949 8 ESTGAQVQVAGDMLPNSTER Oxidation (M) 2104.9695 0.96951109 1791;1792 Q15365;Q15366;Q15366-6;Q15366-3;Q15366-2;Q15366-4;Q15366-5;Q15366-7;Q15366-8;P57721;P57721-2;P57721-3;P57721-5;P57721-4 PCBP1;PCBP2;PCBP3 Poly(rC)-binding protein 1;Poly(rC)-binding protein 2;Poly(rC)-binding protein 3 no no 0 0 1 0 By MS/MS By MS/MS 3 1.08 2 4 6 6 1 8 11 37.457 37.422 2;3 7.8546E-52 11493 20211116_3429_TMUAki_TMT10x_P_F2 237.18 204.96 6901700 9913700 72731 13951000 12245000 12533000 7486700 9046300 12481000 7475800 9977400 6426200 9265600 431370 13926000 11621000 12777000 7997400 9326600 12390000 7366000 9702400 26 26 8 26 26 26 26 26 26 26 26 4362400 5903600 55146 8752400 10322000 10738000 5737000 5041000 7395700 4534900 6075400 4061900 5519300 290600 8757300 9783300 10689000 6110400 5397700 7404400 4449900 5901600 10 10 4 10 10 10 10 10 10 10 10 2539400 4010100 17585 5198800 1922300 1794900 1749600 4005300 5085400 2941000 3902000 2364300 3746300 140760 5168800 1838100 2088100 1887000 3928900 4985600 2916100 3800800 16 16 4 16 16 16 16 16 16 16 16 8239700000 5733900000 2505900000 4891 1791;1792 4557 26647;26648;26649;26650;26651;26652;26653;26654;26655;26656;26657;26658;26659;26660;26661;26662;26663;26664;26665 31951;31952;31953;31954;31955;31956;31957;31958;31959;31960;31961;31962;31963;31964;31965;31966;31967;31968;31969;31970;31971;31972;31973;31974;31975;31976;31977;31978;31979 31954 2405 29 ESTGAQVQVAGDMLPNSTER Unmodified 2088.9746 0.97459647 1791;1792 Q15365;Q15366;Q15366-6;Q15366-3;Q15366-2;Q15366-4;Q15366-5;Q15366-7;Q15366-8;P57721;P57721-2;P57721-3;P57721-5;P57721-4 PCBP1;PCBP2;PCBP3 Poly(rC)-binding protein 1;Poly(rC)-binding protein 2;Poly(rC)-binding protein 3 no no 0 0 0 0 By MS/MS By MS/MS 2.92 0.954 1 3 4 4 7 5 48.705 48.627 2;3 0 14250 20211116_3442_TMUAki_TMT10x_S_F4 532.98 493.68 21347000 34227000 110840 42226000 30291000 30201000 22886000 19697000 18893000 19005000 26460000 19875000 31967000 1619600 42333000 28850000 31272000 23478000 20536000 19663000 18589000 25291000 19 19 6 19 19 19 19 19 19 19 19 12685000 19488000 16154 23523000 23678000 24516000 16953000 11247000 10443000 10848000 15126000 11810000 18199000 934160 23727000 22526000 24616000 17346000 12093000 11075000 10611000 14447000 11 11 2 11 11 11 11 11 11 11 11 8661900 14739000 94681 18703000 6613400 5684300 5933200 8450500 8449400 8157000 11334000 8065000 13768000 685450 18606000 6323900 6656000 6131700 8443500 8588100 7978600 10844000 8 8 4 8 8 8 8 8 8 8 8 11169000000 7108400000 4060100000 4892 1791;1792 4557 26666;26667;26668;26669;26670;26671;26672;26673;26674;26675;26676;26677 31980;31981;31982;31983;31984;31985;31986;31987;31988;31989;31990;31991;31992;31993;31994;31995;31996;31997;31998;31999 31999 20 ESTLEAIGYICQDIDPEQLQDK Unmodified 2564.1952 0.19521351 1739 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 4 2 78.754 78.719 3;4 5.9552E-20 27703 20211116_3439_TMUAki_TMT10x_S_F1 154.11 139.8 46080000 83564000 1283100 78324000 53526000 62799000 55770000 35581000 36605000 41688000 56228000 42914000 77954000 5047500 80042000 51452000 64321000 55859000 37733000 38774000 40463000 53633000 11 11 8 11 11 11 11 11 11 11 11 18938000 36306000 750220 33718000 19028000 33561000 19269000 14936000 15133000 17382000 24130000 17638000 33868000 2217500 34579000 18293000 33781000 19405000 16199000 15895000 16876000 22999000 4 4 2 4 4 4 4 4 4 4 4 27142000 47258000 532840 44606000 34497000 29238000 36501000 20646000 21472000 24305000 32098000 25276000 44087000 2830000 45463000 33159000 30540000 36455000 21534000 22879000 23587000 30635000 7 7 6 7 7 7 7 7 7 7 7 11980000000 7571100000 4408600000 4893 1739 4558 26678;26679;26680;26681;26682;26683 32000;32001;32002;32003;32004;32005;32006;32007;32008;32009;32010;32011 32007 12 ESTLHLVLR Unmodified 1066.6135 0.61349341 1387 P62979;P0CG48;P0CG47;P62987 RPS27A;UBC;UBB;UBA52 Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-C;Ubiquitin;Polyubiquitin-B;Ubiquitin;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40 yes no 0 0 0 0 By MS/MS By MS/MS 4.62 1.94 1 2 1 1 2 4 2 6 7 41.58 41.726 2;3 4.108E-07 11342 20211116_3433_TMUAki_TMT10x_P_F5 172.25 149.33 23155000 34975000 3681 34447000 29228000 30513000 23065000 16908000 19465000 19650000 24142000 21556000 32633000 1568800 35121000 27842000 31021000 23607000 17959000 20126000 19078000 23144000 10 10 1 10 10 10 10 10 10 10 10 15542000 22848000 0 21991000 22039000 24080000 14933000 10798000 12579000 12914000 15469000 14468000 21317000 1063400 22526000 20933000 24104000 15446000 11713000 13002000 12525000 14832000 3 3 0 3 3 3 3 3 3 3 3 7613500 12126000 3681 12456000 7188600 6433000 8132500 6109100 6885900 6735900 8673600 7087900 11316000 505340 12594000 6908700 6917700 8161200 6246400 7123300 6552800 8311800 7 7 1 7 7 7 7 7 7 7 7 2136400000 755930000 1380400000 4894 1387 4559 26684;26685;26686;26687;26688;26689;26690;26691;26692;26693;26694;26695;26696 32012;32013;32014;32015;32016;32017;32018;32019;32020;32021;32022;32023;32024;32025 32013 14 ESVELALK Unmodified 887.4964 0.49639797 239 O43719 HTATSF1 HIV Tat-specific factor 1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 50.793 50.693 2 0.079772 16312 20211116_3430_TMUAki_TMT10x_P_F3 60.118 23.933 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4895 239 4560 26697 32026 32026 1 ESVFTNERFPLR Unmodified 1493.7627 0.76267685 237 O43709 WBSCR22 Probable 18S rRNA (guanine-N(7))-methyltransferase yes yes 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 49.004 49.406 3 3.5117E-16 13546 20211116_3445_TMUAki_TMT10x_S_F6 178.22 122.01 14000000 23226000 279010 22540000 21070000 20793000 14879000 18285000 17036000 14015000 17227000 13037000 21669000 1385400 23017000 20055000 21234000 15483000 18589000 17244000 13864000 16612000 3 3 2 3 3 3 3 3 3 3 3 5473000 8348800 279010 9147200 9855600 13519000 7166900 8577700 8428800 6215900 6792700 5098000 7793300 775160 9340700 9399300 13391000 7449300 8899900 8461600 6168100 6603300 2 2 2 2 2 2 2 2 2 2 2 8527300 14877000 0 13393000 11214000 7273700 7712500 9706800 8607200 7799000 10434000 7938700 13876000 610290 13676000 10656000 7842100 8033900 9689300 8782000 7695500 10009000 1 1 0 1 1 1 1 1 1 1 1 1223000000 847810000 375170000 4896 237 4561 26698;26699;26700;26701 32027;32028;32029;32030 32029 4 ESVFTVEGGHR Unmodified 1216.5836 0.58364985 2593 Q99623;Q99623-2 PHB2 Prohibitin-2 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 1.49 2 1 1 1 1 3 3 34.15 34.104 3 2.2645E-12 10659 20211116_3441_TMUAki_TMT10x_S_F3 178.54 158.51 4723400 7331800 48264 8061500 7772400 7290100 5102000 4527100 4902300 4262200 6012700 4398200 6844000 472130 8161000 7387900 7412200 5308700 4734400 5035400 4173600 5765800 7 7 5 7 7 7 7 7 7 7 7 3161100 4902500 41172 5322500 6214600 5922900 3346300 2942100 3150500 2739500 3957700 2943500 4576200 336530 5409200 5888800 5929900 3538200 3135700 3242300 2683900 3792800 3 3 2 3 3 3 3 3 3 3 3 1562300 2429200 7091.1 2739000 1557900 1367200 1755700 1585000 1751800 1522700 2055000 1454700 2267900 135600 2751800 1499100 1482300 1770400 1598600 1793100 1489700 1973000 4 4 3 4 4 4 4 4 4 4 4 686310000 528760000 157550000 4897 2593 4562 26702;26703;26704;26705;26706;26707 32031;32032;32033;32034;32035;32036;32037 32035 7 ESVLQFYPK Unmodified 1109.5757 0.57571092 3087 Q9UBT2 UBA2 SUMO-activating enzyme subunit 2 yes yes 0 0 0 0 By MS/MS By MS/MS 6.6 0.49 2 3 2 3 60.823 61.17 2;3 0.00018214 20395 20211116_3446_TMUAki_TMT10x_S_F7 135.83 103.7 38211000 66059000 999680 71794000 54435000 66167000 43337000 54232000 48866000 51547000 56873000 35586000 61661000 4326900 72752000 51976000 67486000 44710000 55661000 49755000 50454000 54615000 6 6 6 6 6 6 6 6 6 6 6 20330000 34402000 468970 37679000 37305000 49030000 29161000 28612000 24969000 26692000 28904000 18932000 32113000 2360300 38377000 35593000 48790000 29875000 30064000 25725000 26148000 27761000 3 3 3 3 3 3 3 3 3 3 3 17882000 31657000 530710 34115000 17130000 17137000 14177000 25620000 23897000 24855000 27969000 16654000 29549000 1966600 34375000 16383000 18696000 14835000 25597000 24030000 24306000 26854000 3 3 3 3 3 3 3 3 3 3 3 2490700000 1203400000 1287300000 4898 3087 4563 26708;26709;26710;26711;26712 32038;32039;32040;32041;32042;32043 32043 6 ESVLTATSILNNPIVK Unmodified 1697.9564 0.95635086 1915 Q5BKZ1;Q5BKZ1-3 ZNF326 DBIRD complex subunit ZNF326 yes no 0 0 0 0 By MS/MS By MS/MS 5.86 3.09 2 1 4 4 3 76.67 76.637 2;3 5.2272E-48 24450 20211116_3447_TMUAki_TMT10x_S_F8 257.13 221.19 34224000 55574000 325220 51439000 37613000 54866000 40177000 37574000 35986000 39437000 42395000 31867000 51841000 2995100 52820000 36137000 55294000 40489000 39131000 37021000 38440000 40699000 7 7 5 7 7 7 7 7 7 7 7 20607000 31939000 274530 30362000 19197000 39134000 23419000 23429000 22111000 24017000 25042000 19188000 29797000 1762700 31217000 18518000 38973000 23494000 24631000 22656000 23432000 24067000 4 4 3 4 4 4 4 4 4 4 4 13617000 23635000 50693 21077000 18416000 15732000 16757000 14145000 13875000 15420000 17353000 12679000 22044000 1232400 21602000 17618000 16321000 16995000 14500000 14365000 15007000 16632000 3 3 2 3 3 3 3 3 3 3 3 10546000000 6036900000 4508900000 4899 1915 4564 26713;26714;26715;26716;26717;26718;26719 32044;32045;32046;32047;32048;32049;32050;32051 32051 8 ESVPEFPLSPPK Unmodified 1325.6867 0.68671794 698 P16949;P16949-2 STMN1 Stathmin yes no 0 0 0 0 By MS/MS By MS/MS 5.88 1.31 1 5 4 9 19 28 22 44 45.263 45.335 2;3 9.8163E-17 18636 20211116_3444_TMUAki_TMT10x_S_F5 212.21 184 173610000 303060000 2285900 306250000 243110000 318880000 209780000 216560000 243060000 237060000 250010000 161660000 282800000 16290000 312390000 232330000 321770000 215570000 225960000 246070000 230680000 240960000 55 55 33 55 55 55 55 55 55 55 55 97163000 167180000 1394200 166560000 158230000 237220000 135210000 113580000 128130000 128170000 136150000 90474000 156000000 9650100 171020000 151190000 234530000 138130000 122160000 130950000 124580000 131090000 24 24 15 24 24 24 24 24 24 24 24 76451000 135880000 891720 139690000 84887000 81654000 74575000 102980000 114930000 108890000 113860000 71185000 126800000 6639800 141370000 81147000 87243000 77433000 103800000 115120000 106100000 109870000 31 31 18 31 31 31 31 31 31 31 31 48400000000 25768000000 22633000000 4900 698 4565 26720;26721;26722;26723;26724;26725;26726;26727;26728;26729;26730;26731;26732;26733;26734;26735;26736;26737;26738;26739;26740;26741;26742;26743;26744;26745;26746;26747;26748;26749;26750;26751;26752;26753;26754;26755;26756;26757;26758;26759;26760;26761;26762;26763;26764;26765;26766;26767;26768;26769;26770;26771;26772;26773;26774;26775;26776;26777;26778;26779;26780;26781;26782;26783;26784;26785 32052;32053;32054;32055;32056;32057;32058;32059;32060;32061;32062;32063;32064;32065;32066;32067;32068;32069;32070;32071;32072;32073;32074;32075;32076;32077;32078;32079;32080;32081;32082;32083;32084;32085;32086;32087;32088;32089;32090;32091;32092;32093;32094;32095;32096;32097;32098;32099;32100;32101;32102;32103;32104;32105;32106;32107;32108;32109;32110;32111;32112;32113;32114;32115;32116;32117;32118;32119 32087 68 ESYDDVSSFR Unmodified 1203.5044 0.50439647 2610 Q99848 EBNA1BP2 Probable rRNA-processing protein EBP2 yes yes 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 41.145 41.032 2 1.6755E-09 12146 20211116_3430_TMUAki_TMT10x_P_F3 184.87 172.52 2275800 3173800 5172.2 3826300 7715500 5163100 3239400 3098000 3517200 2083700 4001300 2118900 2964000 252610 3877300 7284700 5130900 3528500 3223700 3583200 2076900 3844900 3 3 1 3 3 3 3 3 3 3 3 2275800 3173800 5172.2 3826300 7715500 5163100 3239400 3098000 3517200 2083700 4001300 2118900 2964000 252610 3877300 7284700 5130900 3528500 3223700 3583200 2076900 3844900 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 104490000 104490000 0 4901 2610 4566 26786;26787 32120;32121;32122 32121 3 ESYSIYVYK Unmodified 1150.5546 0.55464113 528;2191 P33778;Q16778;P23527;P06899;Q6DRA6;Q6DN03;Q8N257 HIST1H2BB;HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST2H2BD;HIST2H2BC;HIST3H2BB Histone H2B type 1-B;Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 3-B no no 0 0 0 0 By MS/MS By MS/MS 6.15 1.6 2 2 2 4 3 9 41 2 30 35 29.825 29.911 2;3 1.521E-07 17680 20211116_3429_TMUAki_TMT10x_P_F2 206.09 170.79 299490000 484640000 15536000 534480000 479220000 501950000 335420000 390470000 415740000 356640000 382520000 278940000 452410000 38352000 539940000 456600000 510860000 348520000 399870000 418250000 349710000 370030000 59 59 27 58 59 59 58 58 58 58 58 150590000 236340000 14086000 259170000 314170000 354890000 178370000 188780000 205420000 158700000 169260000 140310000 220620000 26537000 262900000 298590000 351900000 187150000 197680000 206510000 156230000 164400000 25 25 9 24 25 25 24 24 24 24 24 148900000 248290000 1449900 275310000 165050000 147060000 157050000 201690000 210320000 197940000 213250000 138630000 231790000 11815000 277040000 158010000 158950000 161370000 202200000 211740000 193480000 205620000 34 34 18 34 34 34 34 34 34 34 34 120220000000 51801000000 68421000000 4902 528;2191 4567 26788;26789;26790;26791;26792;26793;26794;26795;26796;26797;26798;26799;26800;26801;26802;26803;26804;26805;26806;26807;26808;26809;26810;26811;26812;26813;26814;26815;26816;26817;26818;26819;26820;26821;26822;26823;26824;26825;26826;26827;26828;26829;26830;26831;26832;26833;26834;26835;26836;26837;26838;26839;26840;26841;26842;26843;26844;26845;26846;26847;26848;26849;26850;26851;26852 32123;32124;32125;32126;32127;32128;32129;32130;32131;32132;32133;32134;32135;32136;32137;32138;32139;32140;32141;32142;32143;32144;32145;32146;32147;32148;32149;32150;32151;32152;32153;32154;32155;32156;32157;32158;32159;32160;32161;32162;32163;32164;32165;32166;32167;32168;32169;32170;32171;32172;32173;32174;32175;32176;32177;32178;32179;32180;32181;32182;32183;32184;32185;32186;32187;32188 32124 66 ESYSVYVYK Unmodified 1136.539 0.53899107 290;2613 Q93079;Q99877;P62807;P58876;O60814;Q5QNW6;Q99879;Q5QNW6-2;P57053;Q99880 HIST1H2BH;HIST1H2BN;HIST1H2BC;HIST1H2BD;HIST1H2BK;HIST2H2BF;HIST1H2BM;H2BFS;HIST1H2BL Histone H2B type 1-H;Histone H2B type 1-N;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type 2-F;Histone H2B type 1-M;Histone H2B type F-S;Histone H2B type 1-L no no 0 0 0 0 By MS/MS By MS/MS 5.48 2.11 3 3 4 3 4 4 20 3 21 23 39.159 39.223 2;3 1.521E-07 16119 20211116_3429_TMUAki_TMT10x_P_F2 206.09 170.79 252960000 400660000 2608800 485880000 427450000 436260000 237020000 358500000 386460000 351940000 354030000 235530000 374180000 23389000 488120000 405070000 445750000 253470000 367020000 385390000 344000000 342520000 49 49 31 48 49 49 48 48 48 49 49 130870000 201250000 1694400 238590000 320590000 319540000 131460000 168740000 206200000 172110000 178170000 121850000 187930000 13741000 241190000 302650000 317150000 144010000 178060000 205510000 167950000 172740000 25 25 17 24 25 25 24 24 25 25 25 122090000 199410000 914410 247290000 106860000 116720000 105560000 189770000 180270000 179840000 175850000 113680000 186250000 9648200 246940000 102410000 128600000 109460000 188960000 179880000 176050000 169780000 24 24 14 24 24 24 24 24 23 24 24 142810000000 69693000000 73116000000 4903 290;2613 4568 26853;26854;26855;26856;26857;26858;26859;26860;26861;26862;26863;26864;26865;26866;26867;26868;26869;26870;26871;26872;26873;26874;26875;26876;26877;26878;26879;26880;26881;26882;26883;26884;26885;26886;26887;26888;26889;26890;26891;26892;26893;26894;26895;26896 32189;32190;32191;32192;32193;32194;32195;32196;32197;32198;32199;32200;32201;32202;32203;32204;32205;32206;32207;32208;32209;32210;32211;32212;32213;32214;32215;32216;32217;32218;32219;32220;32221;32222;32223;32224;32225;32226;32227;32228;32229;32230;32231;32232;32233;32234;32235;32236;32237;32238;32239 32190 51 ETAEADVASLNRR Unmodified 1430.7114 0.71136956 579 P09493-5 TPM1 Tropomyosin alpha-1 chain no no 0 0 0 1 By MS/MS By matching 2.5 0.5 1 1 1 1 33.254 33.023 3 0.082062 8763 20211116_3429_TMUAki_TMT10x_P_F2 37.525 14.289 489130 709350 0 893120 1433900 1181100 716280 606320 692340 447150 703150 455330 662590 41230 902460 1356000 1172500 763330 640710 705770 443270 677960 1 1 0 1 1 1 1 1 1 1 1 489130 709350 0 893120 1433900 1181100 716280 606320 692340 447150 703150 455330 662590 41230 902460 1356000 1172500 763330 640710 705770 443270 677960 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 56665000 38318000 18347000 4904 579 4569 26897;26898 32240 32240 1 ETAELSETLTR Unmodified 1248.6198 0.61976058 1987 Q6NYC8;Q6NYC8-2 PPP1R18 Phostensin yes no 0 0 0 0 By MS/MS 2 0 1 1 42.62 42.658 2 1.8993E-07 11243 20211116_3440_TMUAki_TMT10x_S_F2 119.53 91.786 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4905 1987 4570 26899 32241 32241 1 ETANAIVSQQTPQR Unmodified 1541.7798 0.77978347 991 P40938;P40938-2 RFC3 Replication factor C subunit 3 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 33.682 33.783 3 7.768E-07 6848 20211116_3444_TMUAki_TMT10x_S_F5 98.654 77.847 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4906 991 4571 26900;26901 32242;32243 32243 2 ETAVPGPLGIEDISPNLSPDDK Unmodified 2263.122 0.12197221 1573 Q12888;Q12888-3;Q12888-2 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 75.834 75.722 3 1.019E-05 27551 20211116_3441_TMUAki_TMT10x_S_F3 79.942 65.482 2802200 4653800 25282 4558200 3135300 3114300 3497100 2628100 2587400 2917100 3117800 2609400 4342200 260550 4635300 3016900 3250700 3500200 2705300 2690900 2837100 2991200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2802200 4653800 25282 4558200 3135300 3114300 3497100 2628100 2587400 2917100 3117800 2609400 4342200 260550 4635300 3016900 3250700 3500200 2705300 2690900 2837100 2991200 1 1 1 1 1 1 1 1 1 1 1 513570000 0 513570000 4907 1573 4572 26902;26903 32244 32244 1 ETDCGVHINAGPEIGVASTK Unmodified 2053.9739 0.97386819 1525 Q06210;Q06210-2;O94808 GFPT1;GFPT2 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1;Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.75 0.829 2 1 1 1 3 46.504 46.598 3 3.3544E-32 13434 20211116_3442_TMUAki_TMT10x_S_F4 186.56 169.68 3956200 6403300 14608 7957900 5492300 5758100 3825800 6180800 6481000 5576500 6002800 3683700 5980800 350130 7975700 5224400 6011200 4050000 6244800 6460100 5471200 5805500 4 4 2 4 4 4 4 4 4 4 4 1252100 1976200 11500 2476900 3323900 3567900 1891000 1910700 2079000 1681000 1821400 1165900 1845900 137430 2507800 3151400 3530200 1998800 2019500 2097600 1651300 1765000 2 2 1 2 2 2 2 2 2 2 2 2704100 4427200 3108.5 5481100 2168400 2190200 1934800 4270000 4402000 3895500 4181400 2517800 4135000 212700 5467900 2073000 2481000 2051200 4225300 4362500 3820000 4040500 2 2 1 2 2 2 2 2 2 2 2 345020000 123610000 221410000 4908 1525 4573 26904;26905;26906;26907 32245;32246;32247;32248;32249;32250 32248 6 ETDLLLDDSLVSIFGNRR Unmodified 2062.0695 0.069483134 860 P30044;P30044-2;P30044-3;P30044-4 PRDX5 Peroxiredoxin-5, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 4.8 1.17 1 1 1 2 4 1 78.974 78.956 3 1.7403E-23 27830 20211116_3430_TMUAki_TMT10x_P_F3 166.77 149.7 19335000 32011000 173780 28063000 18726000 35575000 21557000 19800000 20638000 21907000 23115000 18003000 29855000 1669700 29020000 18031000 35423000 21690000 20991000 21124000 21308000 22221000 6 6 4 6 6 6 6 6 6 6 6 17026000 28014000 157880 24217000 15557000 33044000 18533000 17740000 18795000 19559000 20025000 15854000 26126000 1451400 25105000 14996000 32774000 18651000 18863000 19153000 19027000 19279000 5 5 3 5 5 5 5 5 5 5 5 2308900 3996600 15892 3846800 3168700 2531000 3024100 2060800 1842900 2347600 3090200 2150000 3728700 218280 3915300 3035600 2649000 3038400 2127600 1970800 2281000 2942400 1 1 1 1 1 1 1 1 1 1 1 4772500000 3448400000 1324100000 4909 860 4574 26908;26909;26910;26911;26912 32251;32252;32253;32254;32255;32256 32251 6 ETDLQELFRPFGSISR Unmodified 1893.9585 0.95847612 359 O75821 EIF3G Eukaryotic translation initiation factor 3 subunit G yes yes 0 0 0 1 By MS/MS By MS/MS 6.71 1.03 1 2 2 2 3 4 75.809 75.824 3 2.1703E-22 24073 20211116_3447_TMUAki_TMT10x_S_F8 179.09 148.76 85911000 151880000 279640 139210000 90201000 127350000 109500000 73120000 72746000 83080000 110210000 79990000 141670000 3899000 142730000 86959000 129250000 108920000 77378000 76944000 80730000 105150000 10 10 3 10 10 10 10 10 10 10 10 49351000 90696000 0 79360000 50125000 87027000 62190000 43384000 42774000 50248000 65823000 45950000 84586000 902670 81876000 48355000 87204000 61850000 46518000 45183000 48792000 62784000 3 3 0 3 3 3 3 3 3 3 3 36560000 61186000 279640 59849000 40077000 40324000 47309000 29736000 29972000 32832000 44384000 34040000 57088000 2996400 60858000 38604000 42046000 47073000 30860000 31761000 31938000 42370000 7 7 3 7 7 7 7 7 7 7 7 13348000000 6486500000 6861200000 4910 359 4575 26913;26914;26915;26916;26917;26918;26919 32257;32258;32259;32260;32261;32262;32263;32264;32265;32266 32265 10 ETDVVLKVDAQEAK Unmodified 1543.8094 0.80935227 1501 Q02952;Q02952-3;Q02952-2 AKAP12 A-kinase anchor protein 12 yes no 0 0 0 1 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 49.547 49.455 3 5.3777E-15 14144 20211116_3431_TMUAki_TMT10x_P_F4 144.33 102.13 5346200 9478600 36859 8752000 9055900 9626700 6975800 10662000 9941600 9313800 9141000 4978100 8841800 527210 8992900 8633000 9776400 7276400 10748000 9955600 9151900 8842800 3 3 2 3 3 3 3 3 3 3 3 1492600 2379900 0 2205100 2809400 4257700 2259700 2815800 2768700 2577700 2363900 1389700 2220100 139860 2292600 2679800 4178500 2336600 2928600 2780100 2527300 2292900 1 1 0 1 1 1 1 1 1 1 1 3853600 7098600 36859 6546900 6246500 5369000 4716100 7846100 7172800 6736100 6777100 3588300 6621700 387350 6700200 5953200 5597900 4939800 7819100 7175600 6624600 6549900 2 2 2 2 2 2 2 2 2 2 2 404460000 94375000 310090000 4911 1501 4576 26920;26921;26922;26923;26924 32267;32268;32269;32270;32271 32268 5 ETEELHHDRVTLEVGK Unmodified 1890.9436 0.94355434 296 O60869;O60869-2;O60869-3 EDF1 Endothelial differentiation-related factor 1 yes no 0 0 0 1 By MS/MS By matching 3.5 0.5 1 1 1 1 35.044 35.082 5 2.6018E-10 10000 20211116_3430_TMUAki_TMT10x_P_F3 122.34 100.81 54411 82243 1241.2 77949 87914 97706 58304 49737 47575 53147 52722 50671 76725 6137 80120 83627 97240 60357 53092 49052 51766 50700 1 1 1 1 1 1 1 1 1 1 1 54411 82243 1241.2 77949 87914 97706 58304 49737 47575 53147 52722 50671 76725 6137 80120 83627 97240 60357 53092 49052 51766 50700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 48042000 3456000 44586000 4912 296 4577 26925;26926 32272 32272 1 ETEGDVTSVK Unmodified 1063.5033 0.50333384 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 By MS/MS By matching 2.5 0.5 1 1 1 1 34.657 34.426 2 0.070042 9264 20211116_3429_TMUAki_TMT10x_P_F2 51.488 21.17 238950 377320 4365.6 485700 430470 555760 319780 214850 280270 234550 285260 222520 352490 26562 488890 410240 554190 328940 236230 287030 228260 275030 1 1 1 1 1 1 1 1 1 1 1 238950 377320 4365.6 485700 430470 555760 319780 214850 280270 234550 285260 222520 352490 26562 488890 410240 554190 328940 236230 287030 228260 275030 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17835000 8456500 9378400 4913 1146 4578 26927;26928 32273 32273 1 ETESQLLPDVGAIVTCK Unmodified 1858.9346 0.93462914 3268 Q9Y3B2 EXOSC1 Exosome complex component CSL4 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.894 2 1 2 4 1 75.255 75.2 3 6.5492E-08 24893 20211116_3433_TMUAki_TMT10x_P_F5 105.9 93.732 6421000 10470000 113750 8688900 7312000 12319000 9317100 6463800 6162700 7253900 8043500 5979500 9763200 650840 9044200 7068400 12195000 9248300 6891100 6474200 7052000 7701000 2 2 2 2 2 2 2 2 2 2 2 6421000 10470000 113750 8688900 7312000 12319000 9317100 6463800 6162700 7253900 8043500 5979500 9763200 650840 9044200 7068400 12195000 9248300 6891100 6474200 7052000 7701000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1047300000 1047300000 0 4914 3268 4579 26929;26930;26931;26932;26933 32274;32275;32276;32277;32278 32276 5 ETETFSDSSPIEIIDEFPTLISSK Unmodified 2684.2956 0.29563906 2903 Q9NQC3;Q9NQC3-4;Q9NQC3-6 RTN4 Reticulon-4 yes no 0 0 0 0 By MS/MS By MS/MS 2 0.632 1 3 1 2 3 82.002 81.981 3;4 1.3577E-48 28568 20211116_3429_TMUAki_TMT10x_P_F2 213.15 204.65 4955900 8192300 40740 7764400 5474200 6153800 5916800 3762800 4052300 4386000 5918200 4614400 7642700 409850 7927100 5259500 6314700 5920800 3965100 4270400 4257900 5651300 5 5 3 5 5 5 5 5 5 5 5 2057300 3311900 28805 2990700 1731500 2992700 2160700 1383800 1687400 1629400 2490100 1915800 3089200 192850 3073700 1672800 3012500 2154600 1495500 1765800 1581200 2377300 2 2 2 2 2 2 2 2 2 2 2 2898600 4880400 11934 4773800 3742700 3161100 3756000 2379000 2365000 2756600 3428100 2698600 4553500 217000 4853400 3586700 3302200 3766200 2469500 2504500 2676700 3274000 3 3 1 3 3 3 3 3 3 3 3 1044500000 440130000 604400000 4915 2903 4580 26934;26935;26936;26937;26938 32279;32280;32281;32282;32283 32279 5 ETETVFVPVIQAGMEALK Unmodified 1961.018 0.017964835 1214 P53992 SEC24C Protein transport protein Sec24C yes yes 0 0 0 0 By MS/MS 6 0 1 1 80.414 80.414 3 0.00012458 26267 20211116_3445_TMUAki_TMT10x_S_F6 69.188 55.785 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4916 1214 4581 26939 32284 32284 1 ETFEDSNLIPK Unmodified 1291.6296 0.62959699 554 P08243;P08243-2;P08243-3 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes no 0 0 0 0 By MS/MS By matching 3.67 0.471 1 2 2 1 57.801 57.833 3 0.0014942 19291 20211116_3430_TMUAki_TMT10x_P_F3 72.2 48.965 2263200 3556900 45017 3734100 5994200 7023200 4041200 3560000 3634300 3035600 3329500 2107600 3319600 281840 3846100 5701200 6874100 4188700 3778700 3704300 2986400 3221300 1 1 1 1 1 1 1 1 1 1 1 2263200 3556900 45017 3734100 5994200 7023200 4041200 3560000 3634300 3035600 3329500 2107600 3319600 281840 3846100 5701200 6874100 4188700 3778700 3704300 2986400 3221300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 542770000 290290000 252480000 4917 554 4582 26940;26941;26942 32285;32286 32285 2 ETFGVNNAVYGIDAMNPSSR Oxidation (M) 2156.9797 0.97968185 360 O75822;O75822-3 EIF3J Eukaryotic translation initiation factor 3 subunit J yes no 0 0 1 0 By MS/MS By MS/MS 5 0 2 1 1 57.473 57.634 3 1.3709E-06 16621 20211116_3444_TMUAki_TMT10x_S_F5 83.129 58.591 5801700 10013000 114330 10578000 7451900 8588900 6328300 7162600 6762200 6056900 8241400 5402700 9345500 593680 10722000 7122800 8840400 6491300 7321300 6912900 5961000 7904400 4 4 3 4 4 4 4 4 4 4 4 3282700 5207800 49250 5294000 4653000 6077300 3748300 3508700 2987300 2968300 4348700 3056700 4859700 320270 5406400 4440700 6085100 3825800 3680800 3120700 2921200 4152900 2 2 1 2 2 2 2 2 2 2 2 2519000 4805400 65082 5283900 2798900 2511600 2580100 3654000 3774800 3088600 3892600 2345900 4485700 273420 5315200 2682100 2755300 2665500 3640500 3792200 3039800 3751400 2 2 2 2 2 2 2 2 2 2 2 1081000000 488260000 592700000 4918 360 4583 26943;26944 32287;32288;32289;32290 32289 281 4 ETFGVNNAVYGIDAMNPSSRDDFTEFGK Oxidation (M) 3096.3771 0.37709406 360 O75822;O75822-3 EIF3J Eukaryotic translation initiation factor 3 subunit J yes no 0 0 1 1 By MS/MS By MS/MS 5.5 0.707 1 2 5 5 3 70.362 70.35 3;4 3.354E-18 21905 20211116_3444_TMUAki_TMT10x_S_F5 135.8 128.61 35005000 59429000 894750 50167000 39767000 65257000 45983000 34775000 31167000 39610000 45793000 32599000 55419000 3442800 52058000 38339000 64863000 45859000 37040000 32874000 38486000 43722000 8 8 5 8 8 8 8 8 8 8 8 24101000 40437000 808810 33858000 23706000 51964000 32380000 23909000 19812000 26532000 30833000 22447000 37707000 2407700 35276000 22998000 51191000 32002000 25803000 21096000 25805000 29402000 4 4 3 4 4 4 4 4 4 4 4 10904000 18992000 85939 16309000 16060000 13292000 13603000 10866000 11355000 13078000 14960000 10153000 17712000 1035100 16782000 15342000 13673000 13857000 11237000 11778000 12682000 14320000 4 4 2 4 4 4 4 4 4 4 4 6149200000 2823700000 3325500000 4919 360 4584 26945;26946;26947;26948;26949;26950;26951;26952 32291;32292;32293;32294;32295;32296;32297;32298;32299 32296 281 9 ETFLTSPEELYR Unmodified 1483.7195 0.71947463 431 O95433;O95433-2 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 yes no 0 0 0 0 By MS/MS By MS/MS 3 1.41 2 2 2 2 2 6 4 63.115 62.962 2 2.2566E-38 21331 20211116_3430_TMUAki_TMT10x_P_F3 280.07 252.2 42647000 73054000 77383 70672000 48302000 58812000 46747000 44971000 44103000 47554000 54722000 39707000 68158000 3509000 72088000 46269000 60334000 47417000 46499000 45360000 46338000 52459000 10 10 4 10 10 10 10 10 10 10 10 18058000 29110000 15914 28755000 20759000 33963000 21996000 18692000 18523000 19674000 22564000 16813000 27161000 1451200 29438000 19931000 33935000 22140000 19805000 19140000 19174000 21642000 4 4 1 4 4 4 4 4 4 4 4 24588000 43944000 61469 41917000 27543000 24849000 24751000 26278000 25580000 27881000 32157000 22894000 40997000 2057800 42650000 26338000 26400000 25278000 26694000 26220000 27164000 30817000 6 6 3 6 6 6 6 6 6 6 6 7982300000 4039200000 3943200000 4920 431 4585 26953;26954;26955;26956;26957;26958;26959;26960;26961;26962 32300;32301;32302;32303;32304;32305;32306;32307;32308;32309;32310;32311 32303 12 ETGANLAICQWGFDDEANHLLLQNNLPAVR Unmodified 3378.6415 0.64152244 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 78.175 78.17 3;4 1.3852E-20 25029 20211116_3434_TMUAki_TMT10x_P_F6 133.29 130.37 2919300 4955700 79551 4809400 3739300 4004800 3831200 3001100 2601300 3148700 3680800 2718700 4623700 267530 4904700 3592500 4106900 3843300 3106400 2738500 3069100 3517300 3 3 2 3 3 3 3 3 3 3 3 1229800 1985200 1337.9 1996700 1258500 1923500 1716000 1024600 807500 1014600 1473800 1145100 1852500 43485 2035000 1218300 1943900 1688600 1086800 884890 991350 1401100 2 2 1 2 2 2 2 2 2 2 2 1689400 2970500 78213 2812800 2480800 2081200 2115200 1976500 1793800 2134000 2206900 1573600 2771200 224040 2869700 2374200 2163000 2154700 2019600 1853600 2077700 2116200 1 1 1 1 1 1 1 1 1 1 1 1652500000 967480000 685000000 4921 1079 4586 26963;26964 32312;32313;32314 32313 3 ETGEHLVHVK Unmodified 1147.5986 0.59857163 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 30.689 30.579 4 0.0021188 6589 20211116_3431_TMUAki_TMT10x_P_F4 77.662 63.668 732540 1246500 11721 1064500 1022100 1463400 808220 579650 624710 613070 847950 682150 1162500 75712 1104800 975390 1446400 825310 634950 651490 597380 811070 2 2 2 2 2 2 2 2 2 2 2 537660 907030 11093 765700 726320 1203300 571130 387630 430280 423670 588810 500700 845830 57556 797670 693200 1180500 583080 436360 449520 412290 563100 1 1 1 1 1 1 1 1 1 1 1 194880 339510 628.5 298780 295810 260140 237090 192020 194430 189410 259140 181460 316650 18156 307110 282200 265870 242240 198590 201960 185090 247980 1 1 1 1 1 1 1 1 1 1 1 70223000 56209000 14013000 4922 755 4587 26965;26966 32315;32316 32315 2 ETGVDLTK Unmodified 861.44436 0.4443624 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 2.89 0.567 2 6 1 6 3 35.668 35.613 2 0.0006878 12723 20211116_3441_TMUAki_TMT10x_S_F3 135.83 58.773 2579700 4442100 1194.4 4007000 2888700 2803700 3026700 2162400 2506600 2307900 3217000 2401800 4143300 187520 4100600 2771300 2916100 3046800 2235300 2598000 2248000 3081300 6 6 2 6 6 6 6 6 6 6 6 297290 448410 0 466950 488240 559840 354650 299280 355750 296080 382780 276770 418480 22732 476440 464490 558740 366760 317340 362830 289300 368420 2 2 0 2 2 2 2 2 2 2 2 2282500 3993700 1194.4 3540100 2400400 2243900 2672100 1863200 2150800 2011800 2834200 2125000 3724900 164780 3624100 2306800 2357300 2680000 1918000 2235100 1958700 2712900 4 4 2 4 4 4 4 4 4 4 4 136540000 36670000 99874000 4923 972 4588 26967;26968;26969;26970;26971;26972;26973;26974;26975 32317;32318;32319;32320;32321;32322;32323;32324;32325 32323 9 ETGVPIAGR Unmodified 898.48723 0.48723027 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS 3 0 1 1 33.108 32.869 2 0.00019606 10163 20211116_3441_TMUAki_TMT10x_S_F3 98.933 48.036 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4924 629 4589 26976 32326 32326 1 ETGYVVERPSTTK Unmodified 1465.7413 0.7412727 3018 Q9NYF8;Q9NYF8-2;Q9NYF8-3 BCLAF1 Bcl-2-associated transcription factor 1 yes no 0 0 0 1 By MS/MS 4 0 1 1 33.668 33.693 3 1.0366E-05 7845 20211116_3431_TMUAki_TMT10x_P_F4 93.228 78.538 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4925 3018 4590 26977 32327 32327 1 ETHSLFFR Unmodified 1035.5138 0.51377937 976 P39656;P39656-3;P39656-2 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 0 0 0 0 By MS/MS By MS/MS 5.83 1.07 2 2 4 4 5 7 37.037 37.334 2;3 0.00017074 10222 20211116_3446_TMUAki_TMT10x_S_F7 140.09 109.4 3255900 5326300 34691 5923600 5302700 5009100 3859900 4228600 4542500 4036600 4755700 3031600 4972200 303180 5987200 5048500 5141800 4011800 4333000 4598900 3950300 4581000 14 14 6 14 14 14 14 14 14 14 14 1285100 2125300 13712 2417100 3381200 3275300 1930700 1795300 1964900 1676600 1916800 1196600 1984200 144090 2458100 3206100 3250500 2035300 1896400 1995800 1642400 1850500 3 3 1 3 3 3 3 3 3 3 3 1970800 3201000 20979 3506500 1921500 1733800 1929200 2433400 2577600 2360000 2838900 1835000 2988000 159090 3529100 1842400 1891300 1976500 2436600 2603100 2307900 2730500 11 11 5 11 11 11 11 11 11 11 11 873480000 476620000 396870000 4926 976 4591 26978;26979;26980;26981;26982;26983;26984;26985;26986;26987;26988;26989 32328;32329;32330;32331;32332;32333;32334;32335;32336;32337;32338;32339;32340;32341;32342;32343 32341 16 ETIELSPTGRPK Unmodified 1326.7143 0.71432967 2939 Q9NRZ9;Q9NRZ9-4;Q9NRZ9-3;Q9NRZ9-2;Q9NRZ9-6;Q9NRZ9-5 HELLS Lymphoid-specific helicase yes no 0 0 0 1 By MS/MS 5 0 1 1 37.339 37.495 3 0.00026481 8523 20211116_3444_TMUAki_TMT10x_S_F5 84.352 53.281 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4927 2939 4592 26990 32344 32344 1 ETIEQEK Unmodified 875.42363 0.42362696 1356;1409 P62328;CON__P21752;P63313 TMSB4X;TMSB10 Thymosin beta-4;Hematopoietic system regulatory peptide;Thymosin beta-10 no no 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 32.338 32.228 2 0.0023225 8380 20211116_3429_TMUAki_TMT10x_P_F2 161.9 69.432 1825900 2884500 11120 2648300 1746100 1985800 1594600 768640 1046300 969760 1889600 1700000 2690600 143530 2708400 1669900 2036500 1608400 848940 1118300 938840 1796700 4 4 1 4 4 4 4 4 4 4 4 1246500 1907300 0 1675400 1182600 1425100 925410 431520 643810 576860 1148900 1160600 1778800 94181 1721900 1126900 1444900 943410 493240 685210 557410 1092600 2 2 0 2 2 2 2 2 2 2 2 579340 977190 11120 972830 563490 560620 669140 337110 402460 392900 740730 539440 911810 49346 986590 543060 591520 664960 355700 433110 381430 704090 2 2 1 2 2 2 2 2 2 2 2 86727000 48722000 38004000 4928 1356;1409 4593 26991;26992;26993;26994 32345;32346;32347;32348 32346 4 ETIPLQETSLYTQDR Unmodified 1792.8843 0.88430813 1144 P50897;P50897-2 PPT1 Palmitoyl-protein thioesterase 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 56.389 55.994 3 7.5489E-15 18511 20211116_3430_TMUAki_TMT10x_P_F3 139.58 120.26 2416600 4262100 35662 4522600 2729600 2602700 2376200 3362500 3373800 3093200 3570900 2250200 3977900 212470 4566700 2608900 2786900 2459600 3372400 3395600 3032100 3438600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2416600 4262100 35662 4522600 2729600 2602700 2376200 3362500 3373800 3093200 3570900 2250200 3977900 212470 4566700 2608900 2786900 2459600 3372400 3395600 3032100 3438600 2 2 1 2 2 2 2 2 2 2 2 524310000 0 524310000 4929 1144 4594 26995;26996;26997 32349;32350;32351;32352 32349 4 ETITAPVPFDFTHKK Unmodified 1729.9039 0.90392136 2543 Q96RP9;Q96RP9-2 GFM1 Elongation factor G, mitochondrial yes no 0 0 0 1 By MS/MS 8 0 1 1 56.614 56.577 4 0.00080162 16236 20211116_3447_TMUAki_TMT10x_S_F8 70.26 52.121 6641800 11039000 0 10847000 6487000 5976600 5942400 10105000 10694000 8460200 9618600 6183900 10300000 517540 11006000 6204400 6481700 6203200 10016000 10633000 8330400 9312000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6641800 11039000 0 10847000 6487000 5976600 5942400 10105000 10694000 8460200 9618600 6183900 10300000 517540 11006000 6204400 6481700 6203200 10016000 10633000 8330400 9312000 1 1 0 1 1 1 1 1 1 1 1 468190000 0 468190000 4930 2543 4595 26998 32353 32353 1 ETKDTDIVDEAIYYFK Unmodified 1948.9306 0.93058962 169 O15145 ARPC3 Actin-related protein 2/3 complex subunit 3 yes yes 0 0 0 1 By MS/MS By matching 2 0.707 1 2 1 3 1 78.765 78.73 3 3.2306E-05 27712 20211116_3430_TMUAki_TMT10x_P_F3 90.793 73.304 20672000 33846000 326020 29920000 21282000 40622000 26494000 22389000 19513000 21569000 25941000 19250000 31567000 2026200 30960000 20557000 40313000 26385000 23659000 20384000 21099000 24826000 4 4 4 4 4 4 4 4 4 4 4 20672000 33846000 326020 29920000 21282000 40622000 26494000 22389000 19513000 21569000 25941000 19250000 31567000 2026200 30960000 20557000 40313000 26385000 23659000 20384000 21099000 24826000 4 4 4 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2785000000 2133200000 651850000 4931 169 4596 26999;27000;27001;27002 32354;32355;32356;32357 32356 4 ETKPEPMEEDLPENKK Oxidation (M) 1928.9037 0.90372294 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 1 2 By MS/MS 4 0 1 1 35.835 35.863 4 0.00052998 8697 20211116_3431_TMUAki_TMT10x_P_F4 71.402 60.615 911130 1318700 688.14 1925700 4730500 1884400 1136900 839960 1276300 758360 1422900 848350 1232800 129670 1921000 4445500 1898800 1345400 904280 1297500 744010 1368100 1 1 1 1 1 1 1 1 1 1 1 911130 1318700 688.14 1925700 4730500 1884400 1136900 839960 1276300 758360 1422900 848350 1232800 129670 1921000 4445500 1898800 1345400 904280 1297500 744010 1368100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 177260000 177260000 0 4932 897 4597 27003 32358 32358 1105 1 ETLAQLQQEFQR Unmodified 1489.7525 0.75250609 173 O15212 PFDN6 Prefoldin subunit 6 yes yes 0 0 0 0 By MS/MS By MS/MS 4.58 1.04 2 4 3 3 5 7 63.075 63.094 2;3 1.5802E-30 19730 20211116_3431_TMUAki_TMT10x_P_F4 267.39 242.49 40269000 70402000 234270 67592000 46761000 57778000 45786000 46444000 47178000 46942000 52053000 37494000 65682000 3378000 69007000 44809000 59211000 46537000 47808000 48107000 45825000 50063000 15 15 8 15 15 15 15 15 15 15 15 14340000 23904000 120950 23695000 18452000 29846000 19325000 16388000 16340000 16880000 17875000 13353000 22304000 1288700 24280000 17717000 29723000 19464000 17356000 16808000 16466000 17196000 6 6 4 6 6 6 6 6 6 6 6 25929000 46498000 113320 43897000 28309000 27932000 26461000 30055000 30837000 30062000 34178000 24141000 43378000 2089300 44727000 27091000 29488000 27073000 30451000 31299000 29359000 32867000 9 9 4 9 9 9 9 9 9 9 9 7611600000 3340300000 4271300000 4933 173 4598 27004;27005;27006;27007;27008;27009;27010;27011;27012;27013;27014;27015 32359;32360;32361;32362;32363;32364;32365;32366;32367;32368;32369;32370;32371;32372;32373;32374;32375 32360 17 ETLAVNYEKEEEFLTNELSR Unmodified 2413.1649 0.16489966 1840 Q16204 CCDC6 Coiled-coil domain-containing protein 6 yes yes 0 0 0 1 By MS/MS 1 0 1 1 75.713 75.713 3 7.4947E-16 24517 20211116_3428_TMUAki_TMT10x_P_F1 127.1 119.65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4934 1840 4599 27016 32376 32376 1 ETLLNGVGYLHEGLSPMER Oxidation (M) 2130.0416 0.041553824 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 1 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 59.967 60.159 3 0.0044903 17919 20211116_3445_TMUAki_TMT10x_S_F6 55.127 42.146 5123200 8776900 34093 7844400 6459000 9043600 6358200 8202600 7691800 7501600 7308500 4770400 8186300 475230 8086300 6192700 9120100 6495900 8361300 7753100 7355400 7062100 2 2 2 2 2 2 2 2 2 2 2 2997600 4890800 15618 4384700 3447200 6156500 3280500 4247300 3825500 4117900 3957200 2791200 4561800 269380 4535300 3302100 6119600 3353100 4410900 3872600 4027100 3813300 1 1 1 1 1 1 1 1 1 1 1 2125500 3886100 18475 3459700 3011800 2887100 3077700 3955200 3866300 3383700 3351300 1979200 3624600 205850 3551000 2890600 3000500 3142800 3950400 3880500 3328300 3248800 1 1 1 1 1 1 1 1 1 1 1 1678100000 829940000 848190000 4935 352 4600 27017;27018;27019 32377;32378 32378 261 2 ETLSLTVDAK Unmodified 1075.5761 0.57610486 1917 Q5H9R7;Q5H9R7-4;Q5H9R7-6;Q5H9R7-2;Q5H9R7-5;Q5H9R7-3 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 yes no 0 0 0 0 By MS/MS 4 0 1 1 51.752 51.83 2 4.8247E-11 15577 20211116_3442_TMUAki_TMT10x_S_F4 209.6 157.2 3152000 5079500 99742 5559200 3114900 2891200 3139200 3096000 3041800 3129700 4231800 2935600 4741600 353760 5597500 2993300 3114500 3179900 3138400 3141000 3055200 4045400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3152000 5079500 99742 5559200 3114900 2891200 3139200 3096000 3041800 3129700 4231800 2935600 4741600 353760 5597500 2993300 3114500 3179900 3138400 3141000 3055200 4045400 1 1 1 1 1 1 1 1 1 1 1 210620000 0 210620000 4936 1917 4601 27020 32379 32379 1 ETLVYLTHLDYVDTER Unmodified 1965.9684 0.96837211 153 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 3 1.38 2 8 7 2 2 2 17 6 62.798 62.713 3 3.0141E-29 24705 20211116_3441_TMUAki_TMT10x_S_F3 190.28 169.18 45933000 79275000 564660 73095000 54466000 84710000 57124000 63882000 65028000 62342000 63623000 42770000 73949000 4174300 75179000 52308000 85112000 58049000 65956000 65760000 60950000 61418000 25 25 12 25 25 25 25 25 25 25 25 26355000 43589000 322080 40889000 30371000 60811000 34328000 35035000 36123000 34782000 34447000 24540000 40663000 2352100 42202000 29228000 60142000 34669000 36915000 36611000 33980000 33282000 17 17 7 17 17 17 17 17 17 17 17 19577000 35686000 242580 32206000 24094000 23899000 22796000 28847000 28905000 27560000 29176000 18229000 33286000 1822200 32977000 23079000 24970000 23380000 29041000 29148000 26970000 28137000 8 8 5 8 8 8 8 8 8 8 8 11623000000 6844100000 4779000000 4937 153 4602 27021;27022;27023;27024;27025;27026;27027;27028;27029;27030;27031;27032;27033;27034;27035;27036;27037;27038;27039;27040;27041;27042;27043 32380;32381;32382;32383;32384;32385;32386;32387;32388;32389;32390;32391;32392;32393;32394;32395;32396;32397;32398;32399;32400;32401;32402;32403;32404;32405;32406;32407 32404 28 ETNLDSLPLVDTHSK Unmodified 1667.8366 0.83662965 561 P08670 VIM Vimentin yes yes 0 0 0 0 By MS/MS By MS/MS 3.83 1.07 1 1 2 2 2 4 53.169 53.136 3 1.1739E-19 15616 20211116_3431_TMUAki_TMT10x_P_F4 171.26 157.59 20636000 36090000 597330 41847000 29750000 33196000 21923000 33180000 35753000 30534000 33566000 19219000 33698000 2394300 42154000 28365000 34351000 23075000 33656000 35690000 29930000 32448000 7 7 6 7 7 7 7 7 7 7 7 7922100 13349000 342230 15645000 18715000 22061000 12770000 12974000 14646000 12641000 13142000 7378800 12465000 1126900 15894000 17816000 21874000 13322000 13640000 14765000 12359000 12725000 2 2 2 2 2 2 2 2 2 2 2 12714000 22741000 255100 26202000 11035000 11135000 9152600 20205000 21107000 17893000 20424000 11840000 21233000 1267400 26260000 10549000 12477000 9752300 20017000 20926000 17571000 19723000 5 5 4 5 5 5 5 5 5 5 5 2173900000 917650000 1256200000 4938 561 4603 27044;27045;27046;27047;27048;27049 32408;32409;32410;32411;32412;32413;32414;32415 32408 8 ETNLDSLPLVDTHSKR Unmodified 1823.9377 0.93774068 561 P08670 VIM Vimentin yes yes 0 0 0 1 By MS/MS 5 0 1 1 45.275 45.429 4 0.10143 11695 20211116_3444_TMUAki_TMT10x_S_F5 26.548 9.4793 2414800 4332600 5180.2 3736300 2633200 2085200 2028400 4159000 3710700 3081100 3562400 2248500 4040600 208090 3829000 2510000 2272700 2141200 4091700 3696200 3053600 3441100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2414800 4332600 5180.2 3736300 2633200 2085200 2028400 4159000 3710700 3081100 3562400 2248500 4040600 208090 3829000 2510000 2272700 2141200 4091700 3696200 3053600 3441100 1 1 1 1 1 1 1 1 1 1 1 240800000 0 240800000 4939 561 4604 27050 32416 32416 1 ETNPHHPPAWIASAR Unmodified 1682.8277 0.82773672 395 O94906;O94906-2 PRPF6 Pre-mRNA-processing factor 6 yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 31.49 31.473 4 1.4635E-09 7250 20211116_3433_TMUAki_TMT10x_P_F5 126.07 102.22 193610 342670 6768.3 341720 449240 463150 260810 219290 219150 179070 307330 180320 319740 25940 350500 426430 458850 273110 234060 227900 176550 293740 1 1 1 1 1 1 1 1 1 1 1 193610 342670 6768.3 341720 449240 463150 260810 219290 219150 179070 307330 180320 319740 25940 350500 426430 458850 273110 234060 227900 176550 293740 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 87257000 87257000 0 4940 395 4605 27051;27052 32417 32417 1 ETPAATEAPSSTPK Unmodified 1385.6674 0.66743906 1437 P80723;P80723-2 BASP1 Brain acid soluble protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 33.062 33.088 3 9.903E-07 10185 20211116_3441_TMUAki_TMT10x_S_F3 96.464 79.097 604040 969390 13894 964680 1224000 1373100 707970 688280 843980 651280 831650 562530 904520 71711 990570 1161500 1358300 749320 733250 852210 637600 802650 1 1 1 1 1 1 1 1 1 1 1 604040 969390 13894 964680 1224000 1373100 707970 688280 843980 651280 831650 562530 904520 71711 990570 1161500 1358300 749320 733250 852210 637600 802650 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 59591000 59591000 0 4941 1437 4606 27053;27054 32418;32419 32419 2 ETPEHPLK Unmodified 949.4869 0.48689592 2181 Q8N163;Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 29.778 29.666 3 0.041699 6237 20211116_3431_TMUAki_TMT10x_P_F4 45.738 31.744 812790 1369000 8994.4 1334900 1111300 1060900 880710 621670 700190 656780 969510 756860 1277300 79949 1360100 1060300 1087800 899810 655290 729780 640000 926910 2 2 2 2 2 2 2 2 2 2 2 433130 695290 2263.1 659140 665850 762800 475390 343520 401550 360250 519420 403310 648640 41278 676540 633800 761270 489880 370930 415920 351150 497420 1 1 1 1 1 1 1 1 1 1 1 379660 673700 6731.3 675730 445460 298120 405330 278150 298640 296530 450090 353550 628640 38671 683560 426520 326550 409930 284360 313860 288850 429490 1 1 1 1 1 1 1 1 1 1 1 49513000 34200000 15314000 4942 2181 4607 27055;27056 32420;32421 32420 2 ETPHSPGVEDAPIAK Unmodified 1546.7627 0.76273643 3115 Q9UHB6;Q9UHB6-4;Q9UHB6-3;Q9UHB6-2;Q9UHB6-5 LIMA1 LIM domain and actin-binding protein 1 yes no 0 0 0 0 By MS/MS 4 0 1 1 36.385 36.413 3 0.0040686 8943 20211116_3431_TMUAki_TMT10x_P_F4 59.884 40.809 1485900 2395600 49201 3367300 5752200 4989800 2452700 2765000 2913900 2186000 2687500 1383900 2239000 228800 3390800 5435600 4933200 2674700 2906200 2936200 2158900 2599500 2 2 2 2 2 2 2 2 2 2 2 1485900 2395600 49201 3367300 5752200 4989800 2452700 2765000 2913900 2186000 2687500 1383900 2239000 228800 3390800 5435600 4933200 2674700 2906200 2936200 2158900 2599500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 82135000 82135000 0 4943 3115 4608 27057 32422;32423 32422 2 ETPPPLVPPAAR Unmodified 1243.6925 0.69247202 2627 Q9BQA1;Q9BQA1-2 WDR77 Methylosome protein 50 yes no 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 43.516 43.64 2 5.8987E-15 11848 20211116_3431_TMUAki_TMT10x_P_F4 184.36 159.1 3856800 6310600 73286 7230400 5477800 5484300 3997500 5301400 5530200 4533600 5842400 3591600 5891900 410760 7285100 5219600 5690700 4179700 5376400 5570100 4459400 5626300 3 3 3 3 3 3 3 3 3 3 3 1373200 2277000 44058 2671300 3394100 3441400 1994100 2046400 2132400 1695600 2144400 1278900 2126200 183210 2708800 3221900 3427000 2100200 2140500 2163700 1670500 2068200 1 1 1 1 1 1 1 1 1 1 1 2483600 4033600 29228 4559100 2083700 2042900 2003400 3255000 3397800 2838000 3698000 2312700 3765700 227550 4576300 1997700 2263600 2079500 3235800 3406400 2788900 3558100 2 2 2 2 2 2 2 2 2 2 2 660500000 282950000 377550000 4944 2627 4609 27058;27059;27060;27061;27062 32424;32425;32426;32427 32424 4 ETQALILAPTR Unmodified 1211.6874 0.68738664 973 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 47.65 47.813 2 3.5025E-08 13766 20211116_3433_TMUAki_TMT10x_P_F5 151.07 99.961 18060000 30360000 110030 34671000 36766000 36441000 23017000 28924000 25745000 22759000 28238000 16816000 28346000 1824200 35092000 34912000 36846000 24150000 29603000 26160000 22482000 27163000 6 6 3 6 6 6 6 6 6 6 6 10709000 17744000 31463 20161000 29262000 30476000 16884000 17022000 15035000 13315000 16589000 9971000 16566000 1155500 20551000 27747000 30108000 17716000 17874000 15432000 13157000 15955000 3 3 1 3 3 3 3 3 3 3 3 7351600 12616000 78568 14510000 7504200 5965600 6133300 11902000 10710000 9444200 11648000 6845500 11779000 668770 14541000 7164600 6737800 6434600 11728000 10729000 9324900 11208000 3 3 2 3 3 3 3 3 3 3 3 2156200000 1150800000 1005400000 4945 973 4610 27063;27064;27065;27066;27067;27068 32428;32429;32430;32431;32432;32433;32434 32430 7 ETQFAQIFEPLHK Unmodified 1586.8093 0.80929269 2945 Q9NTI5;Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 65.575 65.755 3 8.5778E-06 19953 20211116_3434_TMUAki_TMT10x_P_F6 101.62 75.083 17321000 29165000 451390 29447000 21473000 25256000 20162000 22026000 19501000 21823000 23461000 16131000 27215000 1864000 29958000 20580000 25915000 20499000 22551000 20009000 21321000 22510000 6 6 4 6 6 6 6 6 6 6 6 6632300 11328000 196570 11222000 8739500 14777000 8546600 9029300 7605200 8931100 8645300 6176800 10570000 762570 11509000 8386900 14705000 8650100 9467500 7815100 8726700 8307600 3 3 3 3 3 3 3 3 3 3 3 10689000 17837000 254820 18225000 12734000 10479000 11615000 12996000 11896000 12891000 14816000 9954000 16645000 1101400 18449000 12193000 11210000 11849000 13084000 12194000 12595000 14202000 3 3 1 3 3 3 3 3 3 3 3 1821500000 1232500000 588940000 4946 2945 4611 27069;27070;27071 32435;32436;32437;32438;32439;32440 32435 6 ETQVILLDTPGIISPGK Unmodified 1779.9982 0.99821567 351 O75616;O75616-2 ERAL1 GTPase Era, mitochondrial yes no 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 75.92 75.903 3 1.4191E-05 24521 20211116_3445_TMUAki_TMT10x_S_F6 89.982 71.15 1543200 2879500 26545 2370700 2315200 1898400 1996700 1838200 1514500 1823200 2157700 1437000 2685000 163490 2447400 2213500 1961700 2027100 1871500 1584700 1781200 2061500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1543200 2879500 26545 2370700 2315200 1898400 1996700 1838200 1514500 1823200 2157700 1437000 2685000 163490 2447400 2213500 1961700 2027100 1871500 1584700 1781200 2061500 1 1 1 1 1 1 1 1 1 1 1 334410000 0 334410000 4947 351 4612 27072;27073 32441 32441 1 ETSEELLPPPVQTQIK Unmodified 1807.9567 0.95674479 2182 Q8N183 NDUFAF2 Mimitin, mitochondrial yes yes 0 0 0 0 By MS/MS By matching 4.5 0.5 1 1 1 1 61.413 61.518 3 0.00019911 19105 20211116_3431_TMUAki_TMT10x_P_F4 77.746 58.168 6152600 9988100 84979 10223000 7092100 12160000 7031500 7703900 6023400 7369800 7698900 5729300 9320800 602450 10441000 6803800 12168000 7104300 8047700 6231300 7211500 7375000 2 2 2 2 2 2 2 2 2 2 2 6152600 9988100 84979 10223000 7092100 12160000 7031500 7703900 6023400 7369800 7698900 5729300 9320800 602450 10441000 6803800 12168000 7104300 8047700 6231300 7211500 7375000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 793070000 634600000 158470000 4948 2182 4613 27074;27075 32442;32443 32442 2 ETSLLAVPGALSPLAIPNAAAAAAAAAAGR Unmodified 2685.4814 0.48136361 3152 Q9UKA9;Q9UKA9-5;Q9UKA9-2 PTBP2 Polypyrimidine tract-binding protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 2 3 80.88 80.855 3 5.4016E-15 27451 20211116_3442_TMUAki_TMT10x_S_F4 106.62 95.966 6915800 11816000 92309 11316000 7571800 12370000 9202300 7414200 6395900 7693000 8761700 6439900 11024000 445370 11596000 7306800 12425000 9162100 7796700 6713500 7501900 8378900 5 5 3 5 5 5 5 5 5 5 5 4223400 7460400 47722 7431000 3477400 8880700 5715700 4482800 3796900 4943300 5773700 3932800 6961200 285760 7604600 3393500 8858900 5621200 4793600 4016800 4808900 5508500 3 3 2 3 3 3 3 3 3 3 3 2692300 4355900 44587 3885300 4094400 3489300 3486600 2931400 2599000 2749700 2988000 2507200 4062800 159610 3990900 3913300 3566600 3540900 3003100 2696700 2693000 2870400 2 2 1 2 2 2 2 2 2 2 2 4316200000 2128400000 2187800000 4949 3152 4614 27076;27077;27078;27079;27080 32444;32445;32446;32447;32448 32448 5 ETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGR Unmodified 3122.7452 0.74518287 3153 Q9UKA9-3;Q9UKA9-6;Q9UKA9-4 PTBP2 Polypyrimidine tract-binding protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 4 2 2 4 82.18 82.184 3;4 4.4705E-39 27968 20211116_3442_TMUAki_TMT10x_S_F4 167.03 156.13 1710500 2734000 7958.6 2590300 2137900 2219500 2312200 1807200 2092800 2097600 2318200 1592400 2550500 119770 2647200 2052500 2274700 2329500 1866900 2146700 2036600 2229300 4 4 2 4 4 4 4 4 4 4 4 376940 555820 1494.6 509350 379270 775420 505380 408880 513150 501330 472920 350980 518460 32676 526880 366920 765300 506280 436990 520270 485810 457450 1 1 1 1 1 1 1 1 1 1 1 1333600 2178100 6464 2081000 1758600 1444100 1806800 1398300 1579700 1596200 1845200 1241400 2032100 87094 2120300 1685600 1509400 1823200 1429900 1626400 1550800 1771800 3 3 1 3 3 3 3 3 3 3 3 1644600000 793520000 851070000 4950 3153 4615 27081;27082;27083;27084;27085;27086 32449;32450;32451;32452;32453 32450 5 ETSSDVALASHILTALR Unmodified 1782.9476 0.94757708 79 O00273;O00273-2 DFFA DNA fragmentation factor subunit alpha yes no 0 0 0 0 By MS/MS By MS/MS 6 1.22 1 2 2 2 1 5 3 72.118 72.193 3 2.5691E-29 22956 20211116_3445_TMUAki_TMT10x_S_F6 182.91 167.36 26360000 41670000 207160 41442000 30304000 43986000 31119000 26750000 25027000 28004000 32179000 24544000 38882000 2264200 42332000 29079000 44266000 31334000 28105000 25981000 27299000 30821000 10 10 5 10 10 10 10 10 10 10 10 17371000 26755000 124820 26118000 17655000 32962000 19975000 16950000 15943000 18344000 19866000 16175000 24963000 1522500 26792000 16992000 32797000 20015000 18083000 16535000 17859000 19043000 6 6 3 6 6 6 6 6 6 6 6 8988800 14915000 82337 15324000 12650000 11025000 11144000 9800700 9083700 9660100 12313000 8369000 13919000 741760 15539000 12088000 11469000 11319000 10022000 9445900 9440300 11778000 4 4 2 4 4 4 4 4 4 4 4 5496800000 2462200000 3034600000 4951 79 4616 27087;27088;27089;27090;27091;27092;27093;27094 32454;32455;32456;32457;32458;32459;32460;32461;32462;32463;32464 32462 11 ETSVAIEVIEDTK Unmodified 1432.7297 0.72970496 2537 Q96PZ0;Q96PZ0-2 PUS7 Pseudouridylate synthase 7 homolog yes no 0 0 0 0 By MS/MS 1 0 1 1 69.558 69.388 3 0.010161 23942 20211116_3439_TMUAki_TMT10x_S_F1 61.212 42.154 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4952 2537 4617 27095 32465 32465 1 ETSYGLSFFKPRPGNFER Unmodified 2131.0487 0.048688112 3310 Q9Y512 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 0 0 0 2 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 55.67 55.352 4 3.4355E-24 19318 20211116_3441_TMUAki_TMT10x_S_F3 178.06 143.63 20910000 35641000 149730 35488000 25691000 25031000 21794000 25876000 23134000 23916000 26899000 19470000 33257000 1907900 36058000 24542000 26164000 22352000 26208000 23610000 23438000 25832000 3 3 2 3 3 3 3 3 3 3 3 5636400 9583500 109770 10077000 7372200 11286000 7438400 6792200 6243400 6986900 7687200 5248900 8944300 593910 10263000 7077100 11322000 7504600 7138400 6455100 6815800 7370900 1 1 1 1 1 1 1 1 1 1 1 15273000 26058000 39961 25411000 18318000 13745000 14356000 19084000 16891000 16929000 19212000 14221000 24312000 1314000 25794000 17465000 14842000 14848000 19069000 17155000 16622000 18461000 2 2 1 2 2 2 2 2 2 2 2 2333100000 821400000 1511700000 4953 3310 4618 27096;27097 32466;32467;32468 32468 3 ETTDTDTADQVIASFK Unmodified 1740.8054 0.8053891 235 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 By MS/MS By MS/MS 3.25 0.829 2 2 4 4 4 69.741 69.525 3 2.4379E-15 22860 20211116_3442_TMUAki_TMT10x_S_F4 151.56 137.12 53484000 91002000 1588500 83339000 57619000 88280000 55607000 88796000 94963000 84952000 80300000 49811000 84886000 5972500 85635000 55294000 89641000 57728000 90141000 94366000 83127000 77916000 10 10 10 10 10 10 10 10 10 10 10 19772000 32067000 653900 28879000 24688000 48738000 24550000 31181000 32318000 29034000 28061000 18414000 29910000 2317500 29983000 23708000 48032000 25150000 32525000 32387000 28445000 27201000 4 4 4 4 4 4 4 4 4 4 4 33712000 58936000 934600 54460000 32931000 39542000 31057000 57615000 62645000 55918000 52239000 31396000 54977000 3655000 55652000 31585000 41609000 32578000 57616000 61979000 54682000 50715000 6 6 6 6 6 6 6 6 6 6 6 3021700000 1601700000 1419900000 4954 235 4619 27098;27099;27100;27101;27102;27103;27104;27105 32469;32470;32471;32472;32473;32474;32475;32476;32477;32478;32479;32480 32478 12 ETTLQAPQPPQAPQPLQPR Unmodified 2096.1015 0.10145196 2244 Q8NEY8-3 PPHLN1 Periphilin-1 yes yes 0 0 0 0 By MS/MS 6 0 1 1 51.129 51.23 3 0.024489 13949 20211116_3434_TMUAki_TMT10x_P_F6 44.816 27.738 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4955 2244 4620 27106 32481 32481 1 ETTVGAVTVTHK Unmodified 1241.6616 0.66156582 3322 Q9Y5L0;Q9Y5L0-3;Q9Y5L0-1;Q9Y5L0-5 TNPO3 Transportin-3 yes no 0 0 0 0 By MS/MS By MS/MS 4.86 0.35 1 6 2 5 32.067 32.087 3 1.185E-07 7967 20211116_3431_TMUAki_TMT10x_P_F4 132.79 96.831 2414800 4072900 26778 3470300 3303300 3765200 2630300 1723200 2022100 1819500 2835800 2248700 3798200 237610 3587200 3152100 3771600 2684400 1858000 2112600 1773100 2710400 3 3 3 3 3 3 3 3 3 3 3 2407300 4059700 25554 3457000 3295900 3754300 2621700 1714900 2014500 1810500 2826500 2241600 3785900 235840 3573700 3144900 3760500 2675800 1849400 2104800 1764300 2701500 2 2 2 2 2 2 2 2 2 2 2 7574.9 13190 1223.4 13259 7420.2 10828 8594.9 8375.4 7563.6 8966.5 9316.5 7062.1 12308 1766 13485 7218.4 11126 8624.8 8657 7802 8732.8 8933.1 1 1 1 1 1 1 1 1 1 1 1 180280000 179670000 609390 4956 3322 4621 27107;27108;27109;27110;27111;27112;27113 32482;32483;32484;32485;32486;32487;32488 32482 7 ETTYTEQSHEELGEAGEASQTETVSEENK Unmodified 3212.3753 0.37529896 2737 Q9BZF1;Q9BZF1-3;Q9BZF1-2 OSBPL8 Oxysterol-binding protein-related protein 8 yes no 0 0 0 0 By MS/MS By matching 1.5 0.5 1 1 1 1 41.385 41.413 4 4.8179E-78 10566 20211116_3428_TMUAki_TMT10x_P_F1 244.67 233.04 672550 946590 13523 1488600 864330 981290 609470 283460 389940 353200 569060 626310 885300 71048 1472800 823170 1015300 624740 325510 412660 342080 543410 1 1 1 1 1 1 1 1 1 1 1 672550 946590 13523 1488600 864330 981290 609470 283460 389940 353200 569060 626310 885300 71048 1472800 823170 1015300 624740 325510 412660 342080 543410 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 173020000 154960000 18063000 4957 2737 4622 27114;27115 32489 32489 1 ETTYYDVLGVKPNATQEELK Unmodified 2297.1427 0.14270766 889 P31689;P31689-2 DNAJA1 DnaJ homolog subfamily A member 1 yes no 0 0 0 1 By MS/MS 6 0 1 1 62.419 62.398 3 0.0055496 18929 20211116_3445_TMUAki_TMT10x_S_F6 55.536 46.006 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4958 889 4623 27116 32490 32490 1 ETVDQVEELRR Unmodified 1372.6947 0.69465686 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 35.858 35.633 3 0.0010716 9780 20211116_3429_TMUAki_TMT10x_P_F2 80.17 54.953 590020 810870 21887 1014600 1612100 1213000 814930 759300 847440 628060 853380 549530 757390 83629 1023600 1527000 1213200 869310 790970 860910 618800 823040 1 1 1 1 1 1 1 1 1 1 1 590020 810870 21887 1014600 1612100 1213000 814930 759300 847440 628060 853380 549530 757390 83629 1023600 1527000 1213200 869310 790970 860910 618800 823040 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35076000 35076000 0 4959 1695 4624 27117;27118 32491;32492 32492 2 ETVDSFLDLAR Unmodified 1264.6299 0.62993134 1024 P43007 SLC1A4 Neutral amino acid transporter A yes yes 0 0 0 0 By matching By MS/MS 3 0.816 1 1 1 1 2 72.217 71.912 2 0.0070841 26093 20211116_3441_TMUAki_TMT10x_S_F3 68.626 42.889 2618400 4627200 122120 4229000 3896000 2904500 2940000 3469400 2938000 3141200 3753800 2438900 4316200 348790 4322600 3719000 3053300 3032100 3489100 3018000 3081400 3595900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2618400 4627200 122120 4229000 3896000 2904500 2940000 3469400 2938000 3141200 3753800 2438900 4316200 348790 4322600 3719000 3053300 3032100 3489100 3018000 3081400 3595900 1 1 1 1 1 1 1 1 1 1 1 411590000 196090000 215510000 4960 1024 4625 27119;27120;27121 32493;32494 32493 2 ETVEEQVSTTER Unmodified 1406.6525 0.65251728 1658 Q13619;Q13619-2 CUL4A Cullin-4A yes no 0 0 0 0 By MS/MS By MS/MS 1 0 3 2 1 33.217 33.222 2;3 1.6085E-15 9230 20211116_3439_TMUAki_TMT10x_S_F1 195.8 161.41 137970 235780 927.11 277840 113120 103030 128300 132410 145830 105770 190570 128470 220160 11955 277860 108910 116400 129890 132340 149180 104400 182460 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 137970 235780 927.11 277840 113120 103030 128300 132410 145830 105770 190570 128470 220160 11955 277860 108910 116400 129890 132340 149180 104400 182460 1 1 1 1 1 1 1 1 1 1 1 30480000 12402000 18079000 4961 1658 4626 27122;27123;27124 32495;32496 32496 2 ETVSEESNVLCLSK Unmodified 1593.7556 0.75560214 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 2.92 0.954 1 3 4 4 7 5 55.885 55.756 2;3 2.2662E-99 19467 20211116_3441_TMUAki_TMT10x_S_F3 359.65 291.09 74191000 112480000 753040 156350000 111200000 109860000 73706000 85653000 93912000 76021000 100890000 69082000 105120000 7058700 155710000 105710000 114240000 77349000 88020000 94902000 74643000 97112000 17 17 12 17 17 17 17 17 17 17 17 36439000 53177000 380150 72189000 88998000 88210000 52691000 41430000 44080000 36062000 46533000 33929000 49691000 3836700 72542000 84428000 87823000 55078000 44323000 45307000 35441000 44813000 8 8 5 8 8 8 8 8 8 8 8 37752000 59305000 372890 84158000 22204000 21647000 21015000 44224000 49832000 39959000 54360000 35153000 55431000 3222000 83165000 21281000 26416000 22271000 43697000 49595000 39202000 52299000 9 9 7 9 9 9 9 9 9 9 9 13009000000 8507600000 4501000000 4962 653 4627 27125;27126;27127;27128;27129;27130;27131;27132;27133;27134;27135;27136 32497;32498;32499;32500;32501;32502;32503;32504;32505;32506;32507;32508;32509;32510;32511;32512;32513;32514 32509 18 ETVSQRPGATVPTDFATFPSSAFLR Unmodified 2681.3449 0.34492971 1694 Q14203;Q14203-6;Q14203-3;Q14203-4;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 1 By MS/MS By MS/MS 2.6 2.73 3 1 1 2 3 68.665 68.58 3;4 2.2914E-48 21204 20211116_3447_TMUAki_TMT10x_S_F8 206.18 191.92 29708000 48577000 193070 46912000 32431000 38660000 35025000 21456000 23327000 24389000 33120000 27661000 45322000 2494600 47852000 31161000 39506000 35030000 22771000 24591000 23699000 31646000 8 8 4 8 8 8 8 8 8 8 8 14650000 23369000 63881 22928000 14517000 23871000 16596000 10807000 10880000 11823000 17050000 13640000 21804000 1176000 23436000 13970000 23967000 16548000 11677000 11538000 11505000 16256000 4 4 2 4 4 4 4 4 4 4 4 15058000 25209000 129190 23983000 17914000 14789000 18429000 10649000 12447000 12566000 16070000 14021000 23518000 1318700 24416000 17192000 15540000 18481000 11094000 13053000 12194000 15390000 4 4 2 4 4 4 4 4 4 4 4 3553300000 1626200000 1927100000 4963 1694 4628 27137;27138;27139;27140;27141 32515;32516;32517;32518;32519;32520;32521;32522;32523 32523 9 ETVVEVPQVTWEDIGGLEDVKR Unmodified 2497.27 0.27003344 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 1 By MS/MS By MS/MS 3.31 1.45 2 3 4 3 3 1 9 7 77.371 77.337 3;4 2.2352E-35 25863 20211116_3433_TMUAki_TMT10x_P_F5 192.18 181.19 101380000 164560000 984620 157160000 118200000 134510000 129680000 64556000 59981000 75343000 106600000 94396000 153530000 8674000 160510000 113630000 136850000 128790000 69489000 65725000 73139000 101390000 19 19 9 19 19 19 19 19 19 19 19 61036000 97545000 141120 92035000 64146000 98237000 80022000 40749000 37287000 46979000 63325000 56827000 90999000 4635500 94372000 61875000 98403000 79017000 44519000 40727000 45626000 60281000 11 11 3 11 11 11 11 11 11 11 11 40345000 67019000 843490 65123000 54055000 36269000 49662000 23807000 22694000 28363000 43278000 37569000 62529000 4038500 66139000 51752000 38448000 49769000 24971000 24998000 27514000 41112000 8 8 6 8 8 8 8 8 8 8 8 28345000000 17463000000 10882000000 4964 1235 4629 27142;27143;27144;27145;27146;27147;27148;27149;27150;27151;27152;27153;27154;27155;27156;27157 32524;32525;32526;32527;32528;32529;32530;32531;32532;32533;32534;32535;32536;32537;32538;32539;32540;32541;32542 32532 19 ETVYCLNDDDETEVLKEDIIQGFR Unmodified 2900.3386 0.33858329 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 1 By MS/MS By MS/MS 1.94 1.01 14 10 7 1 1 22 11 62.53 62.475 3;4 6.3242E-61 25849 20211116_3428_TMUAki_TMT10x_P_F1 237.01 213.8 156750000 258680000 612250 247770000 164470000 200020000 193300000 123110000 135890000 148060000 181080000 145940000 241340000 11110000 252820000 158320000 204990000 192790000 129800000 142360000 143570000 173290000 45 45 22 45 45 45 45 45 45 45 45 69010000 113060000 352990 105890000 57725000 104090000 70774000 56731000 57155000 62157000 72414000 64248000 105470000 4428500 108510000 55621000 105080000 70685000 60232000 59283000 60482000 69383000 29 29 14 29 29 29 29 29 29 29 29 87738000 145620000 259260 141880000 106740000 95938000 122520000 66378000 78737000 85903000 108670000 81687000 135870000 6682000 144320000 102700000 99905000 122100000 69565000 83080000 83093000 103900000 16 16 8 16 16 16 16 16 16 16 16 36725000000 18895000000 17829000000 4965 648 4630 27158;27159;27160;27161;27162;27163;27164;27165;27166;27167;27168;27169;27170;27171;27172;27173;27174;27175;27176;27177;27178;27179;27180;27181;27182;27183;27184;27185;27186;27187;27188;27189;27190 32543;32544;32545;32546;32547;32548;32549;32550;32551;32552;32553;32554;32555;32556;32557;32558;32559;32560;32561;32562;32563;32564;32565;32566;32567;32568;32569;32570;32571;32572;32573;32574;32575;32576;32577;32578;32579;32580;32581;32582;32583;32584;32585;32586;32587;32588;32589 32543 47 ETYPNYLPLYVAR Unmodified 1597.814 0.81404372 848 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 67.093 67.317 2 6.3824E-05 22419 20211116_3435_TMUAki_TMT10x_P_F7 99.864 69.61 3350000 5677600 5073.6 6211800 4148300 6589400 4215600 3182800 3297100 3636900 4940600 3119200 5299800 293650 6305000 3979600 6613000 4244200 3421600 3452800 3533200 4715100 1 1 1 1 1 1 1 1 1 1 1 3350000 5677600 5073.6 6211800 4148300 6589400 4215600 3182800 3297100 3636900 4940600 3119200 5299800 293650 6305000 3979600 6613000 4244200 3421600 3452800 3533200 4715100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1120000000 717260000 402780000 4966 848 4631 27191;27192;27193 32590;32591 32590 2 ETYVEQEQGENANDRNDR Unmodified 2165.921 0.920981 3241 Q9Y2L1 DIS3 Exosome complex exonuclease RRP44 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 28.784 28.824 3 3.3084E-64 5597 20211116_3428_TMUAki_TMT10x_P_F1 275.37 250.45 101240 166850 2867.3 166090 309760 137500 118700 96449 125550 101940 143350 94288 155690 9812.6 169060 292380 140920 130600 100300 128050 99330 137730 2 2 1 2 2 2 2 2 2 2 2 51626 87663 2867.3 74430 255850 100720 60168 52881 72387 54086 77055 48090 81749 9812.6 77258 240580 99908 71641 56216 73272 52773 74187 1 1 1 1 1 1 1 1 1 1 1 49617 79191 0 91658 53907 36781 58532 43568 53160 47851 66291 46198 73940 0 91805 51805 41007 58964 44083 54782 46557 63542 1 1 0 1 1 1 1 1 1 1 1 13657000 8073500 5583300 4967 3241 4632 27194;27195 32592;32593 32592 2 EVAAFAQFGSDLDAATQQLLSR Unmodified 2337.1601 0.16008906 805 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4.93 1.95 2 2 3 2 2 2 2 8 7 81.43 81.427 2;3 1.4817E-83 26673 20211116_3445_TMUAki_TMT10x_S_F6 289.72 274.56 18508000 30533000 319560 29121000 20096000 25000000 22302000 15363000 15883000 16406000 23340000 17235000 28486000 1475100 29747000 19340000 25506000 22308000 16137000 16704000 15980000 22284000 18 18 11 18 18 18 18 18 18 18 18 10554000 16823000 172740 15993000 9232000 16301000 11111000 9190400 9414300 9231600 12846000 9828000 15694000 823010 16379000 8906700 16428000 11119000 9704200 9773500 9014400 12286000 10 10 6 10 10 10 10 10 10 10 10 7953900 13711000 146810 13128000 10864000 8698800 11192000 6172500 6468900 7174500 10494000 7406900 12791000 652130 13368000 10433000 9078200 11189000 6433300 6930500 6965700 9998300 8 8 5 8 8 8 8 8 8 8 8 15084000000 7242200000 7842200000 4968 805 4633 27196;27197;27198;27199;27200;27201;27202;27203;27204;27205;27206;27207;27208;27209;27210 32594;32595;32596;32597;32598;32599;32600;32601;32602;32603;32604;32605;32606;32607;32608;32609;32610;32611 32609 18 EVAALCR Unmodified 817.41162 0.41162248 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 33.227 32.988 2 0.0052038 10219 20211116_3441_TMUAki_TMT10x_S_F3 109.63 59.09 986800 1626100 0 1593200 1105300 850340 1056700 805710 688740 777900 1234400 918800 1517200 82439 1616500 1058500 911090 1063000 820610 736140 760880 1173900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 986800 1626100 0 1593200 1105300 850340 1056700 805710 688740 777900 1234400 918800 1517200 82439 1616500 1058500 911090 1063000 820610 736140 760880 1173900 1 1 0 1 1 1 1 1 1 1 1 44283000 0 44283000 4969 647 4634 27211;27212 32612;32613 32613 2 EVAAQVK Unmodified 743.41775 0.41775372 2578 Q99497 PARK7 Protein deglycase DJ-1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 32.778 32.672 2 0.0065884 10056 20211116_3441_TMUAki_TMT10x_S_F3 102.72 10.813 1674000 2784200 8094.4 2810400 2388900 2321600 2004400 1356100 1595200 1491600 2124700 1558700 2598100 156340 2857900 2281500 2373600 2040600 1431600 1659500 1451200 2033200 2 2 2 2 2 2 2 2 2 2 2 989560 1690400 1506.8 1720200 1763600 1703200 1237600 829570 945120 902600 1305100 921390 1577400 94286 1752500 1677800 1716500 1273800 889730 987070 878520 1247800 1 1 1 1 1 1 1 1 1 1 1 684450 1093900 6587.6 1090200 625390 618390 766750 526530 650090 588970 819650 637340 1020700 62058 1105400 603600 657020 766740 541840 672480 572650 785430 1 1 1 1 1 1 1 1 1 1 1 58753000 41114000 17639000 4970 2578 4635 27213;27214 32614;32615 32615 2 EVADEVTRPRPSGEEVLQDIQVMLK Oxidation (M) 2853.4542 0.45422217 912 P33992 MCM5 DNA replication licensing factor MCM5 yes yes 0 0 1 2 By MS/MS 3 0 1 1 65.219 64.93 4 4.2893E-09 22187 20211116_3430_TMUAki_TMT10x_P_F3 101.53 73.329 4389800 7426500 55609 7312200 4581000 9520600 5028000 5265400 5718200 5658000 6115600 4087500 6929300 379960 7500700 4404600 9467200 5098100 5580000 5801200 5509700 5887200 2 2 1 2 2 2 2 2 2 2 2 4389800 7426500 55609 7312200 4581000 9520600 5028000 5265400 5718200 5658000 6115600 4087500 6929300 379960 7500700 4404600 9467200 5098100 5580000 5801200 5509700 5887200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 591600000 591600000 0 4971 912 4636 27215 32616;32617 32617 1130 2 EVADEVTRPRPSGEEVLQDIQVMLK Unmodified 2837.4593 0.45930754 912 P33992 MCM5 DNA replication licensing factor MCM5 yes yes 0 0 0 2 By matching By MS/MS 4 0 2 1 1 76.137 76.116 4 2.4882E-22 25528 20211116_3442_TMUAki_TMT10x_S_F4 144.22 122.35 3400900 5479500 0 5581600 3694200 3259000 4564800 1963400 1676800 2190100 3600000 3166600 5113400 285820 5652200 3564000 3434200 4495400 2068400 1900500 2129600 3413300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3400900 5479500 0 5581600 3694200 3259000 4564800 1963400 1676800 2190100 3600000 3166600 5113400 285820 5652200 3564000 3434200 4495400 2068400 1900500 2129600 3413300 1 1 0 1 1 1 1 1 1 1 1 867150000 423470000 443680000 4972 912 4636 27216;27217 32618 32618 1 EVAFFNNFLTDAK Unmodified 1514.7405 0.74054442 2715 Q9BXP5;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3 SRRT Serrate RNA effector molecule homolog yes no 0 0 0 0 By MS/MS By MS/MS 7 0.816 4 4 4 6 6 74.589 74.605 2;3 7.1121E-19 27756 20211116_3446_TMUAki_TMT10x_S_F7 186.02 166.78 46657000 76307000 314330 73904000 51002000 67396000 56717000 44901000 40739000 48656000 56026000 43442000 71194000 3970900 75466000 49050000 68555000 56737000 46900000 42687000 47366000 53573000 10 10 5 10 10 10 10 10 10 10 10 21118000 32791000 37167 32396000 20900000 38251000 24549000 19989000 18362000 21080000 24058000 19661000 30596000 1552300 33164000 20119000 38196000 24518000 21278000 19153000 20543000 23032000 6 6 3 6 6 6 6 6 6 6 6 25539000 43516000 277160 41508000 30102000 29145000 32168000 24912000 22377000 27577000 31967000 23781000 40597000 2418600 42302000 28931000 30359000 32218000 25622000 23534000 26823000 30541000 4 4 2 4 4 4 4 4 4 4 4 6990800000 2743200000 4247600000 4973 2715 4637 27218;27219;27220;27221;27222;27223;27224;27225;27226;27227;27228;27229 32619;32620;32621;32622;32623;32624;32625;32626;32627;32628 32627 10 EVANAVVRPLGQVLGTPSVAGSENLLK Unmodified 2717.5076 0.50757836 2123 Q86X10;Q86X10-3;Q86X10-4 RALGAPB Ral GTPase-activating protein subunit beta yes no 0 0 0 1 By MS/MS 2 0 1 1 74.236 74.166 4 2.6839E-25 24116 20211116_3440_TMUAki_TMT10x_S_F2 158.67 145.21 1475400 2455700 35754 2221300 1701200 1698200 1784200 1551000 1684100 1774700 1888600 1374000 2290500 158810 2274800 1635500 1759000 1802400 1591100 1724900 1724100 1815600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1475400 2455700 35754 2221300 1701200 1698200 1784200 1551000 1684100 1774700 1888600 1374000 2290500 158810 2274800 1635500 1759000 1802400 1591100 1724900 1724100 1815600 1 1 1 1 1 1 1 1 1 1 1 237870000 0 237870000 4974 2123 4638 27230 32629 32629 1 EVATAIR Unmodified 758.42865 0.42865276 687 P15880 RPS2 40S ribosomal protein S2 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 1 1 1 1 3 1 31.375 31.264 2 0.006242 9548 20211116_3441_TMUAki_TMT10x_S_F3 104.45 7.3801 2970300 5125200 20705 4800100 4437400 4202500 3541800 2267200 2513700 2363000 3720400 2765800 4781100 276450 4910900 4232900 4274600 3607600 2405700 2645100 2303900 3551600 3 3 1 3 3 3 3 3 3 3 3 1645300 2752100 20705 2629900 2986100 3261900 2083800 1444000 1587200 1402400 2180800 1532100 2567600 172350 2701000 2841600 3243200 2145500 1558700 1657500 1371400 2085400 2 2 1 2 2 2 2 2 2 2 2 1325000 2373100 0 2170200 1451300 940560 1458000 823190 926440 960630 1539600 1233700 2213600 104100 2209900 1391300 1031400 1462100 847000 987510 932540 1466200 1 1 0 1 1 1 1 1 1 1 1 151560000 68056000 83504000 4975 687 4639 27231;27232;27233;27234 32630;32631 32631 2 EVCFTIENK Unmodified 1138.5329 0.53285983 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.775 3 4 3 4 6 53.017 53.044 2;3 2.1874E-07 15571 20211116_3431_TMUAki_TMT10x_P_F4 200.54 147.82 54728000 84513000 373910 90282000 66091000 67574000 56651000 52472000 49213000 51548000 66335000 50959000 78881000 4944900 91356000 63150000 69901000 57727000 54084000 50999000 50383000 63461000 11 11 6 11 11 11 11 11 11 11 11 19920000 29593000 23914 31405000 29291000 34743000 21541000 18396000 17484000 17431000 23218000 18547000 27621000 1714900 31961000 27887000 34821000 22130000 19500000 18168000 17064000 22220000 4 4 1 4 4 4 4 4 4 4 4 34808000 54919000 350000 58877000 36800000 32830000 35110000 34076000 31730000 34117000 43117000 32412000 51260000 3229900 59395000 35263000 35080000 35597000 34584000 32831000 33319000 41241000 7 7 5 7 7 7 7 7 7 7 7 3461200000 1514900000 1946300000 4976 2048 4640 27235;27236;27237;27238;27239;27240;27241;27242;27243;27244 32632;32633;32634;32635;32636;32637;32638;32639;32640;32641;32642;32643 32633 12 EVCGFAPYER Unmodified 1226.539 0.53900784 3288 Q9Y3U8 RPL36 60S ribosomal protein L36 yes yes 0 0 0 0 By MS/MS By MS/MS 3.29 1.03 2 2 2 1 3 4 44.902 44.88 2 9.2974E-07 12643 20211116_3442_TMUAki_TMT10x_S_F4 156.83 111.51 23872000 41706000 17402 55930000 40369000 46613000 25645000 35204000 34885000 29420000 35695000 22226000 38969000 2043400 55914000 38327000 47804000 27069000 36195000 35114000 28971000 34408000 7 7 2 7 7 7 7 7 7 7 7 14059000 25987000 15479 31526000 34653000 40491000 20400000 20441000 20010000 16867000 19779000 13090000 24269000 1344800 31904000 32861000 40246000 21426000 21688000 20366000 16620000 19087000 3 3 1 3 3 3 3 3 3 3 3 9812700 15719000 1923.2 24404000 5716400 6121500 5245500 14762000 14875000 12553000 15915000 9136100 14700000 698560 24010000 5465500 7558100 5643400 14507000 14748000 12351000 15321000 4 4 1 4 4 4 4 4 4 4 4 3611600000 1921200000 1690400000 4977 3288 4641 27245;27246;27247;27248;27249;27250;27251 32644;32645;32646;32647;32648;32649 32648 6 EVCGFAPYERR Unmodified 1382.6401 0.64011887 3288 Q9Y3U8 RPL36 60S ribosomal protein L36 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 36.586 36.68 3 1.3989E-11 9094 20211116_3431_TMUAki_TMT10x_P_F4 174.42 109.71 2669600 4113700 23662 5283700 7476100 5461200 3252600 4300200 4334900 3212900 3938100 2485800 3842900 306320 5310300 7063400 5526500 3553600 4398200 4348600 3182600 3811200 3 3 2 3 3 3 3 3 3 3 3 2041900 3009900 19224 3890800 6785900 4987400 2848800 3043800 3106200 2303400 2826100 1901300 2811900 249260 3923400 6408500 4969500 3103500 3170700 3138800 2280100 2734900 2 2 1 2 2 2 2 2 2 2 2 627740 1103800 4438.4 1392900 690230 473830 403850 1256400 1228700 909490 1111900 584520 1031000 57055 1386800 654890 556980 450150 1227500 1209700 902550 1076200 1 1 1 1 1 1 1 1 1 1 1 224090000 138140000 85949000 4978 3288 4642 27252;27253 32650;32651;32652 32651 3 EVCINPYHYK Unmodified 1321.6125 0.61250714 1830 Q15797;Q99717 SMAD1;SMAD5 Mothers against decapentaplegic homolog 1;Mothers against decapentaplegic homolog 5 yes no 0 0 0 0 By MS/MS 7 0 1 1 44.178 44.682 3 0.066052 13210 20211116_3435_TMUAki_TMT10x_P_F7 45.359 30.387 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4979 1830 4643 27254 32653 32653 1 EVCPVLDQFLCHVAK Unmodified 1813.8855 0.88551087 3012 Q9NY27;Q9NY27-2 PPP4R2 Serine/threonine-protein phosphatase 4 regulatory subunit 2 yes no 0 0 0 0 By MS/MS 6 0 1 1 77.129 77.099 3 0.0016259 24553 20211116_3434_TMUAki_TMT10x_P_F6 66.246 53.886 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4980 3012 4644 27255 32654 32654 1 EVDDLEQWIAER Unmodified 1501.7049 0.7048872 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By matching 1 0 2 1 1 76.17 76.138 2 9.8185E-09 24685 20211116_3428_TMUAki_TMT10x_P_F1 147.91 118.44 3471700 5434700 0 5410700 3960200 5393300 4681600 2535300 2137500 3114200 4038300 3232400 5071100 288510 5521200 3815000 5431200 4632300 2739300 2353300 3017700 3836700 1 1 0 1 1 1 1 1 1 1 1 3471700 5434700 0 5410700 3960200 5393300 4681600 2535300 2137500 3114200 4038300 3232400 5071100 288510 5521200 3815000 5431200 4632300 2739300 2353300 3017700 3836700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 925800000 586870000 338930000 4981 1475 4645 27256;27257 32655 32655 1 EVDDLGPEVGDIK Unmodified 1384.6722 0.67219008 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 58.593 58.347 2;3 2.0285E-12 19526 20211116_3430_TMUAki_TMT10x_P_F3 136.7 94.697 2374900 3584200 54121 3956100 4539200 6320500 3626500 3466100 3386900 3050600 3566200 2211700 3345800 277650 4045000 4332700 6228900 3718800 3655700 3462400 2996500 3434600 1 1 1 1 1 1 1 1 1 1 1 2374900 3584200 54121 3956100 4539200 6320500 3626500 3466100 3386900 3050600 3566200 2211700 3345800 277650 4045000 4332700 6228900 3718800 3655700 3462400 2996500 3434600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 254420000 254420000 0 4982 196 4646 27258;27259;27260 32656;32657;32658 32657 3 EVDEGPSPPEQFTAVK Unmodified 1728.8206 0.82064524 1706 Q14331 FRG1 Protein FRG1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 53.261 53.308 3 0.039898 16187 20211116_3442_TMUAki_TMT10x_S_F4 42.818 24.901 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4983 1706 4647 27261 32659 32659 1 EVDEQMLAIQSK Oxidation (M) 1405.6759 0.67589525 1640;2673 Q13509;Q13509-2;Q9BUF5 TUBB3;TUBB6 Tubulin beta-3 chain;Tubulin beta-6 chain no no 0 0 1 0 By MS/MS By MS/MS 3.44 0.831 1 4 3 1 4 5 45.91 45.881 2;3 7.0676E-06 14334 20211116_3430_TMUAki_TMT10x_P_F3 116.55 91.771 19573000 29557000 269870 33852000 38718000 33651000 21750000 22158000 25864000 21358000 25809000 18226000 27596000 2112300 34228000 36712000 34036000 23077000 23085000 26130000 20892000 24898000 9 9 5 9 9 9 9 9 9 9 9 12113000 16999000 169450 19507000 31206000 27254000 14862000 13059000 16796000 13208000 15622000 11280000 15872000 1410800 19839000 29520000 26968000 15989000 13998000 16961000 12893000 15106000 5 5 3 5 5 5 5 5 5 5 5 7460200 12558000 100420 14345000 7511900 6397200 6888200 9099600 9067600 8149700 10187000 6946800 11725000 701530 14389000 7192400 7068000 7087100 9087000 9169000 7998600 9792200 4 4 2 4 4 4 4 4 4 4 4 2156800000 1372200000 784550000 4984 1640;2673 4648 27262;27263;27264;27265;27266;27267;27268;27269;27270 32660;32661;32662;32663;32664;32665;32666;32667;32668 32662 2203 9 EVDEQMLAIQSK Unmodified 1389.681 0.68098063 1640;2673 Q13509;Q13509-2;Q9BUF5 TUBB3;TUBB6 Tubulin beta-3 chain;Tubulin beta-6 chain no no 0 0 0 0 By MS/MS By MS/MS 3.29 0.7 1 3 3 5 2 55.995 55.776 2;3 4.5525E-22 18468 20211116_3430_TMUAki_TMT10x_P_F3 208.33 170.82 16500000 25893000 416350 33003000 22335000 21132000 17877000 15829000 14479000 15290000 21795000 15366000 24188000 1834800 32989000 21329000 22141000 18261000 16345000 15138000 14955000 20798000 4 4 3 4 4 4 4 4 4 4 4 7066800 11032000 329910 13059000 14164000 14549000 10052000 7319100 7099300 6929300 9701600 6582400 10302000 992750 13201000 13498000 14567000 10320000 7794800 7443900 6783600 9278200 2 2 2 2 2 2 2 2 2 2 2 9433200 14861000 86446 19944000 8171100 6583000 7825200 8509700 7379900 8360300 12093000 8783800 13886000 842070 19788000 7831200 7573800 7941700 8550400 7694500 8171300 11520000 2 2 1 2 2 2 2 2 2 2 2 1641700000 947530000 694130000 4985 1640;2673 4648 27271;27272;27273;27274;27275;27276;27277 32669;32670;32671;32672;32673;32674;32675 32671 7 EVDEQMLNVQNK Oxidation (M) 1461.677 0.67695789 1418;1668;2689;539 P07437;P68371;Q13885;Q9BVA1 TUBB;TUBB4B;TUBB2A;TUBB2B Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain no no 0 0 1 0 By MS/MS By MS/MS 2.93 0.799 1 2 8 3 9 5 39.083 39.029 2;3 4.5036E-12 12357 20211116_3430_TMUAki_TMT10x_P_F3 130.56 109.98 23143000 34942000 438350 46815000 59693000 38667000 28233000 23405000 28116000 21271000 33394000 21552000 32649000 2821400 46799000 56471000 39551000 30279000 24503000 28795000 20862000 32051000 15 15 11 15 15 15 15 15 15 15 15 14324000 20699000 191600 28534000 51096000 30881000 18991000 14407000 17032000 12882000 19588000 13339000 19343000 1870000 28591000 48197000 30945000 20881000 15434000 17504000 12644000 18816000 8 8 5 8 8 8 8 8 8 8 8 8819100 14244000 246750 18282000 8597300 7785300 9241700 8997900 11083000 8388500 13806000 8213300 13306000 951370 18208000 8274200 8605900 9397600 9069000 11291000 8217700 13234000 7 7 6 7 7 7 7 7 7 7 7 3916400000 2655300000 1261200000 4986 539;1418;1668;2689 4649 27278;27279;27280;27281;27282;27283;27284;27285;27286;27287;27288;27289;27290;27291 32676;32677;32678;32679;32680;32681;32682;32683;32684;32685;32686;32687;32688;32689;32690;32691;32692;32693;32694;32695 32685 465 20 EVDEQMLNVQNK Unmodified 1445.682 0.68204326 1418;1668;2689;539 P07437;P68371;Q13885;Q9BVA1 TUBB;TUBB4B;TUBB2A;TUBB2B Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain no no 0 0 0 0 By MS/MS By MS/MS 3.62 1 2 4 4 3 6 7 50.193 50.205 2;3 1.257E-88 14454 20211116_3431_TMUAki_TMT10x_P_F4 367.27 301 61371000 87251000 1169900 145050000 156420000 77003000 67302000 46580000 43574000 40403000 89833000 57151000 81631000 7417600 142880000 147800000 81959000 72193000 48710000 47008000 39715000 85226000 15 15 11 15 15 15 15 15 15 15 15 29156000 41623000 1023400 63361000 131140000 59348000 42743000 22144000 20254000 18534000 40987000 27155000 38920000 4793300 63043000 123590000 59871000 47282000 24284000 22325000 18250000 38897000 7 7 6 7 7 7 7 7 7 7 7 32215000 45628000 146520 81693000 25273000 17655000 24559000 24436000 23320000 21869000 48846000 29996000 42711000 2624200 79836000 24218000 22088000 24910000 24426000 24684000 21464000 46329000 8 8 5 8 8 8 8 8 8 8 8 7843900000 5424400000 2419500000 4987 539;1418;1668;2689 4649 27292;27293;27294;27295;27296;27297;27298;27299;27300;27301;27302;27303;27304 32696;32697;32698;32699;32700;32701;32702;32703;32704;32705;32706;32707;32708;32709;32710;32711 32701 16 EVDIGIPDATGR Unmodified 1241.6252 0.62518031 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 52.885 52.622 2 3.4386E-16 17099 20211116_3430_TMUAki_TMT10x_P_F3 199.17 163.29 10497000 17162000 141890 23302000 18399000 19707000 13515000 11978000 12803000 11677000 14735000 9774800 16037000 1105000 23284000 17527000 20124000 13942000 12559000 13124000 11417000 14154000 3 3 2 3 3 3 3 3 3 3 3 6715100 10733000 141890 14607000 16147000 17063000 10973000 7955500 8397000 7853700 9408300 6253500 10029000 821070 14664000 15361000 17026000 11321000 8545100 8691100 7674500 9044500 2 2 2 2 2 2 2 2 2 2 2 3781900 6429600 0 8695200 2252300 2644000 2541900 4022500 4405900 3823400 5326500 3521300 6007900 283960 8620000 2166400 3097800 2620900 4014300 4433300 3742300 5109800 1 1 0 1 1 1 1 1 1 1 1 1026800000 582520000 444300000 4988 1235 4650 27305;27306 32712;32713;32714 32712 3 EVDIGIPDATGRLEILQIHTK Unmodified 2317.2642 0.2641602 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 1 By MS/MS By MS/MS 5.71 1.03 1 2 2 2 4 3 70.603 70.707 4 6.1496E-21 22298 20211116_3445_TMUAki_TMT10x_S_F6 160.25 142.15 51667000 84795000 538520 78272000 61815000 84112000 63717000 60775000 56636000 60537000 65514000 48109000 79098000 4695600 80398000 59337000 84803000 64312000 62962000 58242000 59134000 62924000 12 12 7 12 12 12 12 12 12 12 12 30010000 47793000 362110 44691000 30835000 58084000 35497000 35849000 33832000 35217000 38371000 27943000 44584000 2649100 46011000 29693000 57847000 35711000 37552000 34652000 34421000 36874000 7 7 4 7 7 7 7 7 7 7 7 21657000 37002000 176410 33581000 30980000 26027000 28220000 24926000 22804000 25320000 27144000 20166000 34514000 2046500 34387000 29643000 26956000 28601000 25410000 23590000 24713000 26050000 5 5 3 5 5 5 5 5 5 5 5 12617000000 6094300000 6522600000 4989 1235 4651 27307;27308;27309;27310;27311;27312;27313 32715;32716;32717;32718;32719;32720;32721;32722;32723;32724;32725;32726 32724 12 EVDIYTVK Unmodified 965.50696 0.50696266 2612 Q99873;Q99873-2;Q99873-3;Q9NR22;Q9NR22-2 PRMT1;PRMT8 Protein arginine N-methyltransferase 1;Protein arginine N-methyltransferase 8 yes no 0 0 0 0 By MS/MS 4 0 1 1 50.872 51.034 2 0.002124 14805 20211116_3431_TMUAki_TMT10x_P_F4 124.98 78.557 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4990 2612 4652 27314 32727 32727 1 EVDNLYNIEILR Unmodified 1489.7777 0.77765821 1910 Q53HL2 CDCA8 Borealin yes yes 0 0 0 0 By MS/MS 3 1 1 1 2 70.763 70.656 2 4.1305E-08 24021 20211116_3429_TMUAki_TMT10x_P_F2 122.55 70.82 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4991 1910 4653 27315;27316 32728;32729 32728 2 EVDPLVYNMSHEDPGNVSYSEIGGLSEQIR Oxidation (M) 3349.5409 0.54086492 1357 P62333 PSMC6 26S protease regulatory subunit 10B yes yes 0 0 1 0 By MS/MS By MS/MS 2.67 0.943 2 1 1 2 68.444 68.214 3;4 7.8926E-27 23040 20211116_3429_TMUAki_TMT10x_P_F2 141.78 135.13 4850300 8383800 12109 7296500 5523600 8503100 6098500 6684800 6737700 6030800 6547500 4515800 7818900 286200 7538500 5308400 8547100 6175700 6868800 6819700 5917000 6322100 5 5 1 5 5 5 5 5 5 5 5 2383300 3990000 12109 3717700 2135300 5227800 3101400 3415000 3306800 3009100 3225900 2219200 3722100 115410 3834500 2072500 5191800 3101700 3551500 3352200 2955600 3114400 2 2 1 2 2 2 2 2 2 2 2 2466900 4393700 0 3578900 3388300 3275300 2997100 3269800 3430900 3021700 3321700 2296600 4096800 170790 3704000 3236000 3355300 3073900 3317400 3467500 2961400 3207700 3 3 0 3 3 3 3 3 3 3 3 2445700000 1456900000 988760000 4992 1357 4654 27317;27318;27319 32730;32731;32732;32733;32734 32730 1818 5 EVDRPGSK Unmodified 886.45084 0.45084476 975 P39023 RPL3 60S ribosomal protein L3 yes yes 0 0 0 1 By MS/MS By MS/MS 4 1 1 1 1 1 26.835 26.651 3 0.0013544 7788 20211116_3441_TMUAki_TMT10x_S_F3 108.15 85.434 501450 805440 6538.6 635840 517200 614980 596160 339150 347500 371850 545690 466950 750930 47888 660330 498290 621580 592880 359720 371430 361820 520270 2 2 2 2 2 2 2 2 2 2 2 162890 245180 4411.9 208210 168140 272520 177740 130820 137610 136120 194510 151700 228640 17690 215980 161730 270470 178550 140320 143770 132720 185870 1 1 1 1 1 1 1 1 1 1 1 338560 560260 2126.8 427630 349050 342460 418420 208330 209880 235730 351180 315250 522290 30198 444350 336560 351110 414340 219400 227660 229100 334390 1 1 1 1 1 1 1 1 1 1 1 17061000 1997400 15064000 4993 975 4655 27320;27321 32735;32736 32736 2 EVEAQLPEKVEYVIK Unmodified 1772.956 0.95601651 1154 P51532-5;P51532-2;P51532-3;P51532-4;P51532 SMARCA4 Transcription activator BRG1 yes no 0 0 0 1 By MS/MS By MS/MS 4 0.707 1 2 1 3 1 65.498 65.439 3 0.00095335 21177 20211116_3442_TMUAki_TMT10x_S_F4 71.263 43.401 28686000 49153000 202130 44016000 26494000 45280000 12372000 22477000 20541000 36130000 22903000 26711000 45846000 1781200 44690000 25054000 44676000 13541000 24013000 20623000 34724000 22021000 6 6 2 5 4 4 5 4 5 5 5 18692000 31670000 202130 30044000 26494000 45280000 12262000 22477000 20442000 22797000 22878000 17405000 29546000 1781200 30993000 25054000 44676000 13435000 24013000 20525000 22252000 21995000 4 4 2 4 4 4 4 4 4 4 4 9994100 17483000 0 13972000 0 0 110390 0 98743 13333000 24848 9305500 16300000 0 13698000 0 0 105840 0 98342 12472000 26257 2 2 0 1 0 0 1 0 1 1 1 1843300000 1485600000 357700000 4994 1154 4656 27322;27323;27324;27325 32737;32738;32739;32740;32741;32742 32742 6 EVEEEPGIHSLK Unmodified 1365.6776 0.67760981 3301 Q9Y4L1;Q9Y4L1-2 HYOU1 Hypoxia up-regulated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 38.83 38.741 3 2.3482E-05 11175 20211116_3429_TMUAki_TMT10x_P_F2 91.961 69.082 1662600 2595700 0 3184000 1529900 1342500 1539500 2291800 2559800 1822700 2624500 1547900 2424300 120660 3179100 1466200 1502500 1592700 2268200 2561800 1799500 2529700 3 3 0 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1662600 2595700 0 3184000 1529900 1342500 1539500 2291800 2559800 1822700 2624500 1547900 2424300 120660 3179100 1466200 1502500 1592700 2268200 2561800 1799500 2529700 3 3 0 3 3 3 3 3 3 3 3 68854000 0 68854000 4995 3301 4657 27326;27327;27328 32743;32744;32745;32746 32743 4 EVEELILTESK Unmodified 1288.6762 0.67621283 2744 Q9BZZ5-2;Q9BZZ5;Q9BZZ5-3;Q9BZZ5-6;Q9BZZ5-5;Q9BZZ5-1 API5 Apoptosis inhibitor 5 yes no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 67.347 67.14 3 1.4461E-11 20987 20211116_3428_TMUAki_TMT10x_P_F1 127.51 102.77 1941200 3583100 58048 4016100 2026800 1866600 1848800 2173600 2381100 2354600 2655800 1807900 3345000 216240 4034300 1942400 2041100 1901100 2199900 2408900 2292200 2553400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1941200 3583100 58048 4016100 2026800 1866600 1848800 2173600 2381100 2354600 2655800 1807900 3345000 216240 4034300 1942400 2041100 1901100 2199900 2408900 2292200 2553400 1 1 1 1 1 1 1 1 1 1 1 339610000 0 339610000 4996 2744 4658 27329;27330;27331 32747;32748;32749 32747 3 EVEELILTESKK Unmodified 1416.7712 0.77117585 2744 Q9BZZ5-2;Q9BZZ5;Q9BZZ5-3;Q9BZZ5-6;Q9BZZ5-5;Q9BZZ5-1 API5 Apoptosis inhibitor 5 yes no 0 0 0 1 By MS/MS By MS/MS 3 0.894 2 1 2 4 1 61.544 61.534 3 3.3818E-12 20331 20211116_3429_TMUAki_TMT10x_P_F2 135.02 105.33 10345000 16048000 131010 18088000 13123000 13071000 11011000 10189000 11371000 10843000 12646000 9633600 14982000 1018700 18233000 12537000 13560000 11291000 10524000 11597000 10563000 12160000 2 2 2 2 2 2 2 2 2 2 2 5217200 7989600 78000 8826500 8086100 8812100 6026500 5082100 5685600 5174800 6248200 4858300 7458200 545410 8945200 7706300 8894200 6210100 5358200 5819000 5050100 6010000 1 1 1 1 1 1 1 1 1 1 1 5128300 8058500 53011 9261000 5036400 4258800 4984700 5106900 5684900 5668600 6398200 4775300 7523900 473290 9288000 4831000 4666200 5080600 5166300 5778100 5513200 6150000 1 1 1 1 1 1 1 1 1 1 1 788720000 526890000 261840000 4997 2744 4659 27332;27333;27334;27335;27336 32750;32751;32752;32753;32754 32750 5 EVEETDEMDQVELVDFDPNQER Oxidation (M) 2681.1287 0.12865009 889 P31689 DNAJA1 DnaJ homolog subfamily A member 1 yes yes 0 0 1 0 By MS/MS By MS/MS 1.2 0.4 4 1 2 3 65.889 65.748 2;3 1.3865E-34 20486 20211116_3428_TMUAki_TMT10x_P_F1 182.02 169.63 17012000 29482000 344390 25457000 18006000 29965000 18773000 22224000 22151000 23882000 23395000 15842000 27495000 1567400 26322000 17302000 30075000 19107000 23036000 22431000 23256000 22530000 8 8 4 8 8 8 8 8 8 8 8 8486200 13823000 90806 12765000 8197700 18560000 9614500 10113000 10462000 11524000 11273000 7901800 12894000 617400 13183000 7899000 18361000 9704600 10751000 10635000 11197000 10849000 5 5 2 5 5 5 5 5 5 5 5 8526300 15659000 253590 12692000 9808100 11405000 9158500 12111000 11688000 12358000 12122000 7940600 14601000 950020 13138000 9402800 11714000 9402200 12285000 11795000 12060000 11681000 3 3 2 3 3 3 3 3 3 3 3 6237500000 2951400000 3286100000 4998 889 4660 27337;27338;27339;27340;27341 32755;32756;32757;32758;32759;32760;32761;32762 32759 1078 8 EVEETDEMDQVELVDFDPNQER Unmodified 2665.1337 0.13373547 889 P31689 DNAJA1 DnaJ homolog subfamily A member 1 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 3 2 1 73.275 73.221 2;3 4.4702E-111 23552 20211116_3428_TMUAki_TMT10x_P_F1 310.57 305.72 10732000 15396000 0 19495000 9339900 10890000 10424000 5727900 5122000 6081400 9530400 9991600 14382000 701870 19470000 8971800 11509000 10352000 6094900 5599200 5924800 9057200 4 4 0 4 4 4 4 4 4 4 4 7011100 9399000 0 12217000 5348700 7583000 6402200 2910600 2773800 3422000 5639100 6526800 8780800 393450 12195000 5144400 7905900 6326600 3210500 3082300 3321000 5351100 2 2 0 2 2 2 2 2 2 2 2 3721300 5997200 0 7277400 3991200 3307400 4021600 2817300 2348200 2659400 3891300 3464900 5600800 308410 7274400 3827400 3603300 4025900 2884500 2516900 2603800 3706100 2 2 0 2 2 2 2 2 2 2 2 3131100000 1183100000 1948000000 4999 889 4660 27342;27343;27344 32763;32764;32765;32766;32767 32765 5 EVEGDDVPESIMLEMK 2 Oxidation (M) 1851.8118 0.81179639 1874 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 2 0 By MS/MS By matching 2 0.816 1 1 1 1 2 56.994 56.788 3 0.00028161 16844 20211116_3428_TMUAki_TMT10x_P_F1 76.358 65.087 3191700 5354500 46771 5305900 4972500 7924500 4750800 5356500 5832800 4335700 4747000 2971700 4996100 286830 5455500 4762100 7853700 4864100 5545200 5848000 4276500 4612900 2 2 1 2 2 2 2 2 2 2 2 3191700 5354500 46771 5305900 4972500 7924500 4750800 5356500 5832800 4335700 4747000 2971700 4996100 286830 5455500 4762100 7853700 4864100 5545200 5848000 4276500 4612900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 670810000 328300000 342510000 5000 1874 4661 27345;27346;27347 32768;32769 32768 2489;2490 2 EVEGDDVPESIMLEMK Oxidation (M) 1835.8169 0.81688177 1874 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 1 0 By MS/MS 1 0 1 1 64.661 64.661 3 0.0024061 19942 20211116_3428_TMUAki_TMT10x_P_F1 60.918 49.648 2539300 3851800 0 3689200 2837500 4682500 3313300 2544000 2303800 2431800 3055700 2363600 3593500 127490 3789900 2727000 4660900 3304700 2691100 2414600 2379700 2924500 1 1 0 1 1 1 1 1 1 1 1 2539300 3851800 0 3689200 2837500 4682500 3313300 2544000 2303800 2431800 3055700 2363600 3593500 127490 3789900 2727000 4660900 3304700 2691100 2414600 2379700 2924500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 560170000 560170000 0 5001 1874 4661 27348 32770 32770 2489;2490 1 EVEGDDVPESIMLEMK Unmodified 1819.822 0.82196714 1874 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 0 0 By MS/MS 1 0 1 1 76.964 76.9 3 0.0057751 26959 20211116_3439_TMUAki_TMT10x_S_F1 59.513 48.243 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5002 1874 4661 27349 32771 32771 1 EVEIQSHLR Unmodified 1109.5829 0.58292157 147 O14965 AURKA Aurora kinase A yes yes 0 0 0 0 By matching By MS/MS 2.5 0.5 1 1 1 1 32.934 32.703 3 0.00015792 10093 20211116_3441_TMUAki_TMT10x_S_F3 123.29 96.774 189870 358480 4820 340910 212690 240670 237440 266780 278610 272810 323360 176820 334430 20553 347520 204850 251950 240830 270110 283220 266190 310540 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 189870 358480 4820 340910 212690 240670 237440 266780 278610 272810 323360 176820 334430 20553 347520 204850 251950 240830 270110 283220 266190 310540 1 1 1 1 1 1 1 1 1 1 1 49116000 26929000 22187000 5003 147 4662 27350;27351 32772 32772 1 EVEIVASSDSSISSK Unmodified 1536.7519 0.75189697 1995 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 49.762 49.662 3 0.013582 15851 20211116_3430_TMUAki_TMT10x_P_F3 49.049 30.216 6228800 10450000 98441 12400000 6979800 7495900 5836600 9015300 9055600 8296800 8897900 5800300 9758000 618670 12439000 6669800 7973000 6079800 9068000 9066100 8132700 8588400 4 4 4 4 4 4 4 4 4 4 4 1207900 2071800 34985 2249600 2091000 2944000 1660200 1896900 2005800 1811700 1883100 1124900 1933900 145110 2292800 1996300 2932800 1717200 1979000 2021100 1772900 1820400 1 1 1 1 1 1 1 1 1 1 1 5020900 8377900 63456 10151000 4888800 4551900 4176400 7118400 7049800 6485000 7014800 4675400 7824100 473560 10147000 4673500 5040200 4362500 7089000 7045000 6359700 6768000 3 3 3 3 3 3 3 3 3 3 3 418740000 77095000 341640000 5004 1995 4663 27352;27353;27354 32773;32774;32775 32773 3 EVEMGPFK Oxidation (M) 951.43717 0.43716853 2116 Q86VP6;Q86VP6-2;O75155;O75155-2 CAND1;CAND2 Cullin-associated NEDD8-dissociated protein 1;Cullin-associated NEDD8-dissociated protein 2 yes no 0 0 1 0 By MS/MS 3 0 1 1 40.264 40.317 3 0.05702 12049 20211116_3430_TMUAki_TMT10x_P_F3 49.418 25.989 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5005 2116 4664 27355 32776 32776 2597 1 EVENLILENTQLLETK Unmodified 1885.0044 0.004423261 261 O60271;O60271-2;O60271-9;O60271-4;O60271-5;O60271-3 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 yes no 0 0 0 0 By MS/MS 1 0 1 1 79.601 79.565 3 0.054233 28037 20211116_3439_TMUAki_TMT10x_S_F1 39.863 22.374 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5006 261 4665 27356 32777 32777 1 EVEPALELLEPIDQK Unmodified 1721.9087 0.90873196 884 P31150 GDI1 Rab GDP dissociation inhibitor alpha yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 3 2 1 78.24 78.187 2;3 1.6365E-20 25587 20211116_3428_TMUAki_TMT10x_P_F1 161.94 133.93 3470200 5612900 76873 6348200 3455700 3473300 3982200 2896200 3399000 3465400 3896100 3231700 5240200 359140 6381300 3331400 3702700 3993700 2990800 3501000 3361000 3743000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3470200 5612900 76873 6348200 3455700 3473300 3982200 2896200 3399000 3465400 3896100 3231700 5240200 359140 6381300 3331400 3702700 3993700 2990800 3501000 3361000 3743000 1 1 1 1 1 1 1 1 1 1 1 673960000 0 673960000 5007 884 4666 27357;27358;27359 32778;32779;32780 32779 3 EVEPEPTEDKDLEADEEDTR Unmodified 2345.003 0.0030388701 738 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 3 2 1 41.82 41.759 3;4 2.2887E-80 12689 20211116_3439_TMUAki_TMT10x_S_F1 301.41 283.35 3398700 4881700 36048 10678000 10291000 8048500 3552100 5149600 8425900 4213700 7325300 3164800 4576800 408160 10444000 9699600 8296300 4106300 5354000 8319600 4153800 7100500 5 5 3 5 5 5 5 5 5 5 5 1804200 2562900 8510.1 5138600 9951400 7485400 3029300 2968800 4436100 2247900 3795400 1679900 2401100 267880 5095300 9368100 7379400 3478200 3224800 4428600 2225100 3681200 3 3 1 3 3 3 3 3 3 3 3 1594500 2318800 27538 5539100 339200 563100 522880 2180800 3989800 1965700 3529800 1484800 2175700 140280 5349000 331520 916940 628100 2129200 3890900 1928700 3419300 2 2 2 2 2 2 2 2 2 2 2 509740000 419740000 90006000 5008 738 4667 27360;27361;27362 32781;32782;32783;32784;32785 32785 5 EVEQFDVATHLQTAPELVDR Unmodified 2296.1335 0.13353995 3265 Q9Y3A2 UTP11L Probable U3 small nucleolar RNA-associated protein 11 yes yes 0 0 0 0 By MS/MS 3 0 1 1 62.156 61.72 3 6.0367E-09 21930 20211116_3441_TMUAki_TMT10x_S_F3 103.95 84.911 1215000 2042700 0 2240700 1501200 1116200 1222500 1330300 1150500 1276500 1563900 1131200 1906800 97923 2255000 1432000 1211300 1252300 1340100 1188300 1248900 1495800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1215000 2042700 0 2240700 1501200 1116200 1222500 1330300 1150500 1276500 1563900 1131200 1906800 97923 2255000 1432000 1211300 1252300 1340100 1188300 1248900 1495800 1 1 0 1 1 1 1 1 1 1 1 273480000 0 273480000 5009 3265 4668 27363 32786 32786 1 EVESMGAHLNAYSTR Oxidation (M) 1679.7573 0.75733347 891 P31930 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 31.701 31.737 3 0.0080703 6264 20211116_3444_TMUAki_TMT10x_S_F5 55.239 44.9 368010 531430 320.96 685250 793400 694600 411430 336470 426030 334230 439860 342630 496460 33151 688340 750930 698980 437750 360100 433260 326510 423880 2 2 1 2 2 2 2 2 2 2 2 344580 479070 0 616310 762950 672720 382700 314130 397880 309180 400420 320800 447540 30810 619880 721760 673790 408540 337330 404200 302160 386190 1 1 0 1 1 1 1 1 1 1 1 23435 52358 320.96 68941 30455 21874 28729 22336 28150 25048 39436 21823 48917 2340.4 68456 29178 25197 29214 22768 29064 24352 37693 1 1 1 1 1 1 1 1 1 1 1 50090000 46348000 3742200 5010 891 4669 27364;27365;27366 32787;32788 32788 1081 2 EVESPYEVHDYIR Unmodified 1634.7577 0.75765105 2028 Q6Y7W6;Q6Y7W6-4;Q6Y7W6-5;Q6Y7W6-3 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 44.948 44.611 3 2.9762E-06 14906 20211116_3441_TMUAki_TMT10x_S_F3 107.14 72.961 1100100 1590900 7333 2056300 898610 721100 879250 1222500 1225500 1167000 1339300 1024300 1486200 95216 2045000 861580 828230 903590 1216000 1235600 1142100 1288500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1100100 1590900 7333 2056300 898610 721100 879250 1222500 1225500 1167000 1339300 1024300 1486200 95216 2045000 861580 828230 903590 1216000 1235600 1142100 1288500 1 1 1 1 1 1 1 1 1 1 1 69818000 0 69818000 5011 2028 4670 27367;27368 32789;32790 32790 2 EVEVEVESMDK Oxidation (M) 1308.5755 0.57551251 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 1 0 By MS/MS By MS/MS 1.91 0.793 4 4 3 6 5 42.671 42.554 2;3 5.7937E-11 12561 20211116_3429_TMUAki_TMT10x_P_F2 128.91 95.907 12428000 20333000 79437 20409000 16778000 19856000 13650000 15674000 15559000 14701000 16609000 11571000 18974000 1102800 20807000 16009000 20168000 14068000 16119000 15782000 14398000 15989000 11 11 6 11 11 11 11 11 11 11 11 7587800 12238000 27747 12001000 11552000 14794000 8808100 9584900 9281000 8871400 9913400 7064800 11418000 651250 12301000 11006000 14782000 9092500 9986800 9443500 8693700 9543500 5 5 3 5 5 5 5 5 5 5 5 4839700 8095800 51689 8408000 5225600 5061800 4841600 6089500 6277800 5830000 6695100 4506600 7555400 451570 8505500 5003800 5386100 4975600 6131700 6338500 5704600 6445600 6 6 3 6 6 6 6 6 6 6 6 1599100000 997370000 601740000 5012 2048 4671 27369;27370;27371;27372;27373;27374;27375;27376;27377;27378;27379 32791;32792;32793;32794;32795;32796;32797;32798;32799;32800;32801;32802;32803;32804 32796 2559 14 EVEVEVESMDK Unmodified 1292.5806 0.58059789 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 By MS/MS 2 0 1 1 52.419 52.251 3 0.03962 15222 20211116_3440_TMUAki_TMT10x_S_F2 51.218 33.354 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5013 2048 4671 27380 32805 32805 1 EVFEDAAEIR Unmodified 1177.5615 0.56151742 729 P19338 NCL Nucleolin yes yes 0 0 0 0 By MS/MS By MS/MS 2.43 1.18 2 2 1 2 3 4 50.558 50.45 2 2.4804E-11 16212 20211116_3439_TMUAki_TMT10x_S_F1 214.05 166.2 57529000 86554000 60902 117810000 66183000 66567000 52902000 53068000 59161000 53350000 68406000 53563000 80881000 4521000 117210000 63101000 70671000 54549000 54646000 60240000 52093000 65702000 7 7 2 7 7 7 7 7 7 7 7 25872000 37690000 12072 51453000 45020000 47019000 30540000 25324000 28288000 24501000 30970000 24088000 35220000 2153200 51452000 42786000 47686000 31666000 26818000 28972000 23963000 29792000 3 3 1 3 3 3 3 3 3 3 3 31657000 48864000 48830 66353000 21163000 19548000 22362000 27744000 30873000 28849000 37436000 29475000 45661000 2367700 65756000 20315000 22985000 22884000 27828000 31268000 28130000 35910000 4 4 1 4 4 4 4 4 4 4 4 17619000000 10704000000 6915500000 5014 729 4672 27381;27382;27383;27384;27385;27386;27387 32806;32807;32808;32809;32810;32811;32812 32809 7 EVFEMATR Oxidation (M) 997.45388 0.45388123 1314;549 P08134;P61586 RHOC;RHOA Rho-related GTP-binding protein RhoC;Transforming protein RhoA no no 0 0 1 0 By MS/MS By MS/MS 2.8 1.17 1 1 1 2 3 2 35.885 35.818 2 0.039747 9809 20211116_3429_TMUAki_TMT10x_P_F2 64.734 43.58 1957800 3206100 3037.2 3856600 4065500 3588000 2287200 2201200 2700400 2036900 2746500 1822800 2994000 179280 3884400 3852600 3640700 2425800 2303100 2730700 1996200 2648000 2 2 1 2 2 2 2 2 2 2 2 1131500 1772700 0 2169000 3199500 2825000 1399800 1246700 1579700 1162000 1527200 1053400 1655600 107390 2194500 3021500 2802000 1519500 1344700 1597300 1138300 1474900 1 1 0 1 1 1 1 1 1 1 1 826260 1433300 3037.2 1687600 866010 763030 887410 954490 1120700 874980 1219300 769350 1338400 71890 1689900 831090 838660 906240 958420 1133400 857830 1173100 1 1 1 1 1 1 1 1 1 1 1 240910000 165490000 75420000 5015 549;1314 4673 27388;27389;27390;27391;27392 32813;32814 32813 502;1771 2 EVFEMATR Unmodified 981.45897 0.45896661 1314;549 P08134;P61586 RHOC;RHOA Rho-related GTP-binding protein RhoC;Transforming protein RhoA no no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 46.094 46.089 2 0.016302 14378 20211116_3430_TMUAki_TMT10x_P_F3 76.064 44.775 14083000 22314000 131340 26202000 23812000 19002000 15056000 14183000 13671000 12790000 18512000 13113000 20836000 1420100 26348000 22619000 19694000 15687000 14622000 14141000 12549000 17708000 4 4 3 4 4 4 4 4 4 4 4 7345800 11534000 114730 13022000 17355000 14128000 9822900 7547100 7224700 6633700 9393300 6840500 10768000 856130 13196000 16459000 14176000 10277000 7978200 7540500 6516500 8994200 2 2 2 2 2 2 2 2 2 2 2 6736800 10780000 16611 13180000 6456400 4874300 5233100 6635800 6446800 6156100 9119000 6272700 10068000 564000 13152000 6160500 5517500 5409700 6643600 6600200 6032100 8714000 2 2 1 2 2 2 2 2 2 2 2 380890000 221450000 159440000 5016 549;1314 4673 27393;27394;27395;27396 32815;32816;32817 32815 3 EVFGDTLNESRDPDRPPER Unmodified 2228.0458 0.045787579 2430 Q96CX2 KCTD12 BTB/POZ domain-containing protein KCTD12 yes yes 0 0 0 2 By MS/MS By MS/MS 1.89 0.567 2 6 1 3 6 33.954 33.897 3;4 2.6553E-50 8992 20211116_3428_TMUAki_TMT10x_P_F1 223.36 204.6 5092700 7970600 79756 9621400 6859900 7738100 5406900 8487300 8736600 6853000 7786600 4741900 7443600 464570 9670600 6542200 8016100 5663500 8542600 8708500 6760300 7540900 11 11 4 11 11 11 11 11 11 11 11 2152000 3060800 29.663 3756300 4587400 5208700 3296700 3725400 3709400 2859500 2967500 2003400 2858600 169430 3804700 4363300 5183300 3424200 3836600 3729300 2828400 2885600 3 3 1 3 3 3 3 3 3 3 3 2940700 4909800 79727 5865100 2272500 2529400 2110200 4761900 5027200 3993500 4819100 2738600 4584900 295140 5866000 2178900 2832700 2239300 4705900 4979300 3931900 4655300 8 8 3 8 8 8 8 8 8 8 8 1737000000 1099900000 637140000 5017 2430 4674 27397;27398;27399;27400;27401;27402;27403;27404;27405 32818;32819;32820;32821;32822;32823;32824;32825;32826;32827;32828 32818 11 EVFSMAGVVVR Oxidation (M) 1208.6223 0.62234354 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 1 0 By MS/MS 6 0 1 1 48.624 48.72 2 0.01489 12930 20211116_3434_TMUAki_TMT10x_P_F6 67.081 43.109 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5018 1171 4675 27406 32829 32829 1561 1 EVGDGTTSVVIIAAELLK Unmodified 1814.0037 0.0036949795 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 By MS/MS By MS/MS 4.4 0.49 3 2 3 2 82.058 82.062 2;3 3.8129E-63 27557 20211116_3431_TMUAki_TMT10x_P_F4 266.85 203.44 8901300 13705000 99422 12526000 7661300 10976000 7773200 5498700 6023000 6444000 7869700 8286900 12784000 586760 12839000 7340200 11154000 7824700 5895400 6269500 6254600 7534500 4 4 2 4 4 4 4 4 4 4 4 7422000 11819000 99422 10152000 6245700 10155000 6224400 4733000 4866000 5383700 6519900 6909800 11022000 498240 10474000 5981600 10223000 6272700 5105300 5068500 5231200 6238300 3 3 2 3 3 3 3 3 3 3 3 1479200 1886800 0 2374000 1415600 820890 1548800 765670 1157000 1060300 1349900 1377100 1762400 88516 2364200 1358500 930820 1551900 790090 1201100 1023400 1296200 1 1 0 1 1 1 1 1 1 1 1 1938500000 1428000000 510500000 5019 712 4676 27407;27408;27409;27410;27411 32830;32831;32832;32833 32831 4 EVGEAFTILSDPK Unmodified 1404.7137 0.71366097 2590 Q99615;Q99615-2 DNAJC7 DnaJ homolog subfamily C member 7 yes no 0 0 0 0 By MS/MS By MS/MS 3.57 1.05 1 3 1 2 3 4 70.878 70.464 2;3 1.6704E-12 24470 20211116_3430_TMUAki_TMT10x_P_F3 138.25 100.77 3486400 6063900 104300 6255200 4197900 4223600 4509100 3888700 3649800 4100300 4675200 3247000 5659000 396220 6337500 4039200 4420500 4530900 3977000 3787000 3995900 4478200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3486400 6063900 104300 6255200 4197900 4223600 4509100 3888700 3649800 4100300 4675200 3247000 5659000 396220 6337500 4039200 4420500 4530900 3977000 3787000 3995900 4478200 2 2 2 2 2 2 2 2 2 2 2 460440000 0 460440000 5020 2590 4677 27412;27413;27414;27415;27416;27417;27418 32834;32835;32836;32837;32838;32839;32840;32841 32835 8 EVGGGHGCTSPPFPQEAR Unmodified 1881.8428 0.84279444 2032 Q6ZN17;Q6ZN17-2 LIN28B Protein lin-28 homolog B yes no 0 0 0 0 By MS/MS 4 0 1 1 33.791 33.816 3 5.4249E-06 7950 20211116_3431_TMUAki_TMT10x_P_F4 89.459 79.263 352080 441450 3150 652110 885350 679330 343740 277190 357710 225210 397540 327840 412700 39594 650780 835490 681340 377420 300560 364710 222090 382260 1 1 1 1 1 1 1 1 1 1 1 352080 441450 3150 652110 885350 679330 343740 277190 357710 225210 397540 327840 412700 39594 650780 835490 681340 377420 300560 364710 222090 382260 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 84276000 84276000 0 5021 2032 4678 27419 32842 32842 1 EVGMIDGK Oxidation (M) 863.40587 0.4058684 3395 yes yes 0 0 1 0 By MS/MS 4 0 1 1 41.215 41.425 2 0.037991 11296 20211116_3442_TMUAki_TMT10x_S_F4 67.032 17.674 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5022 3395 4679 27420 32843 32843 3319 1 EVGSIIGK Unmodified 801.45962 0.45961853 1791;1792 Q15365;P57723;P57723-2;Q15366;Q15366-6;Q15366-3;Q15366-2;Q15366-4;Q15366-5;Q15366-7;Q15366-8;P57721;P57721-2;P57721-3;P57721-5;P57721-4 PCBP1;PCBP4;PCBP2;PCBP3 Poly(rC)-binding protein 1;Poly(rC)-binding protein 4;Poly(rC)-binding protein 2;Poly(rC)-binding protein 3 no no 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 47.117 47.266 2 0.00041632 12409 20211116_3444_TMUAki_TMT10x_S_F5 143.12 73.122 50414000 83741000 477660 78754000 72809000 77437000 59353000 55458000 55858000 49730000 67393000 46943000 78120000 4873200 80675000 69499000 78475000 60800000 57323000 57388000 48805000 64655000 8 8 6 8 8 8 8 8 8 8 8 31056000 48897000 393550 46867000 50302000 60250000 37510000 32521000 33544000 30056000 40292000 28919000 45618000 3211100 48156000 47934000 59930000 38594000 34391000 34538000 29456000 38660000 5 5 5 5 5 5 5 5 5 5 5 19358000 34844000 84115 31887000 22507000 17187000 21843000 22936000 22314000 19674000 27101000 18025000 32502000 1662100 32519000 21565000 18545000 22206000 22932000 22850000 19349000 25995000 3 3 1 3 3 3 3 3 3 3 3 2169300000 1177400000 991950000 5023 1791;1792 4680 27421;27422;27423;27424;27425;27426 32844;32845;32846;32847;32848;32849;32850;32851 32850 8 EVGSPPLDPTER Unmodified 1295.6357 0.635745 2443 Q96EK5 KIAA1279 KIF1-binding protein yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 37.773 37.8 2 9.2515E-12 10109 20211116_3440_TMUAki_TMT10x_S_F2 134.84 102.52 41371 74289 0 82532 127950 103300 66411 51121 59547 42688 60715 38518 69350 4274.9 83924 121110 102780 70369 54358 60921 42039 58533 1 1 0 1 1 1 1 1 1 1 1 41371 74289 0 82532 127950 103300 66411 51121 59547 42688 60715 38518 69350 4274.9 83924 121110 102780 70369 54358 60921 42039 58533 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8108300 8108300 0 5024 2443 4681 27427;27428 32852;32853 32853 2 EVGVYEALKDDSWLK Unmodified 1750.8778 0.87776618 988 P40925;P40925-3;P40925-2 MDH1 Malate dehydrogenase, cytoplasmic yes no 0 0 0 1 By MS/MS By MS/MS 4.33 1.55 2 2 2 3 2 1 6 6 74.005 73.954 3;4 1.1605E-29 24465 20211116_3433_TMUAki_TMT10x_P_F5 199.37 180.08 418880000 664550000 1357400 661300000 507090000 570560000 507370000 342230000 328920000 373940000 472420000 389990000 620080000 32089000 673500000 485980000 581710000 509110000 360420000 347520000 363900000 451290000 18 18 7 18 18 18 18 18 18 18 18 210710000 338890000 880800 333340000 216220000 366350000 265170000 177120000 171700000 195520000 237080000 196190000 316200000 17053000 340940000 208520000 366920000 263520000 190190000 181080000 190190000 226680000 10 10 4 10 10 10 10 10 10 10 10 208170000 325660000 476590 327960000 290870000 204210000 242200000 165100000 157220000 178420000 235340000 193800000 303880000 15036000 332560000 277460000 214790000 245590000 170240000 166440000 173710000 224600000 8 8 3 8 8 8 8 8 8 8 8 12591000000 5998100000 6593000000 5025 988 4682 27429;27430;27431;27432;27433;27434;27435;27436;27437;27438;27439;27440 32854;32855;32856;32857;32858;32859;32860;32861;32862;32863;32864;32865;32866;32867;32868;32869;32870;32871 32861 18 EVHKQVVESAYEVIK Unmodified 1756.9359 0.93594977 462 P00338;P00338-3;P00338-4 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 1 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 48.37 48.615 4 4.2688E-07 12841 20211116_3434_TMUAki_TMT10x_P_F6 118.45 86.628 5811600 10719000 82482 9864900 8081100 10046000 5708400 15209000 15574000 12489000 10980000 5411800 9998900 590480 10127000 7693900 10339000 6219800 15121000 15249000 12310000 10734000 4 4 4 4 4 4 4 4 4 4 4 1228800 2016700 46418 1933700 3505400 4614600 2161100 2850200 2835300 2313300 1951600 1144500 1881500 177020 2018700 3330200 4496100 2283300 2970900 2823600 2281400 1910000 1 1 1 1 1 1 1 1 1 1 1 4582800 8702500 36065 7931200 4575700 5431100 3547300 12359000 12739000 10176000 9028600 4267300 8117500 413460 8108200 4363700 5842800 3936500 12151000 12425000 10028000 8824400 3 3 3 3 3 3 3 3 3 3 3 983690000 319350000 664340000 5026 462 4683 27441;27442;27443 32872;32873;32874;32875 32872 4 EVIAEEEPPTVTEPLPENR Unmodified 2148.0586 0.058643676 1501 Q02952;Q02952-3;Q02952-2 AKAP12 A-kinase anchor protein 12 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 3 2 1 55.41 55.26 2;3 2.1021E-68 16220 20211116_3428_TMUAki_TMT10x_P_F1 251.84 203.1 5353200 9246700 42156 8496100 8658900 13183000 7361100 9857600 9143600 8559200 8181600 4984400 8625400 497930 8790600 8270500 13066000 7589700 10151000 9189900 8412900 7922200 3 3 1 3 3 3 3 3 3 3 3 3954200 6518900 0 5972700 7127000 11518000 6101800 7064800 6577000 6143800 5901600 3681500 6080800 340790 6214600 6805900 11291000 6257700 7380100 6646200 6038300 5713900 2 2 0 2 2 2 2 2 2 2 2 1398900 2727800 42156 2523500 1532000 1665100 1259200 2792800 2566600 2415400 2280000 1302900 2544500 157130 2576000 1464600 1774600 1332000 2771300 2543700 2374500 2208300 1 1 1 1 1 1 1 1 1 1 1 1325900000 870510000 455410000 5027 1501 4684 27444;27445;27446 32876;32877;32878;32879 32878 4 EVIAVSCGPAQCQETIR Unmodified 1916.9084 0.90843116 968 P38117;P38117-2 ETFB Electron transfer flavoprotein subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 4 0 4 2 2 45.735 45.86 2;3 4.6276E-120 13054 20211116_3442_TMUAki_TMT10x_S_F4 348.78 314.02 1404600 2312400 83398 2551100 3482500 3426900 2060200 2261200 2532400 1566400 2184700 1308400 2158600 223280 2598800 3308500 3410900 2178700 2337100 2543300 1558500 2118300 1 1 1 1 1 1 1 1 1 1 1 1404600 2312400 83398 2551100 3482500 3426900 2060200 2261200 2532400 1566400 2184700 1308400 2158600 223280 2598800 3308500 3410900 2178700 2337100 2543300 1558500 2118300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 265970000 265970000 0 5028 968 4685 27447;27448;27449;27450 32880;32881;32882;32883 32882 4 EVIDLLKPDQVEGIQK Unmodified 1823.004 0.0040293305 2107 Q86UP2;Q86UP2-3;Q86UP2-4;Q86UP2-2 KTN1 Kinectin yes no 0 0 0 1 By MS/MS By MS/MS 5.29 1.03 2 2 2 1 3 4 68.401 68.437 3 2.1111E-21 21382 20211116_3445_TMUAki_TMT10x_S_F6 172.24 144.96 30071000 51845000 339250 50641000 38765000 49272000 34265000 37842000 36788000 36848000 40191000 28000000 48372000 2803200 51727000 37069000 50022000 35070000 39022000 37436000 36028000 38666000 9 9 4 9 9 9 9 9 9 9 9 13619000 22676000 218400 22053000 18724000 30947000 17778000 16368000 16232000 16194000 17178000 12682000 21157000 1341300 22674000 17938000 30650000 18034000 17373000 16615000 15823000 16542000 4 4 2 4 4 4 4 4 4 4 4 16451000 29169000 120850 28588000 20042000 18325000 16487000 21473000 20555000 20653000 23013000 15318000 27215000 1461900 29052000 19131000 19372000 17036000 21649000 20821000 20205000 22124000 5 5 2 5 5 5 5 5 5 5 5 2330700000 976220000 1354500000 5029 2107 4686 27451;27452;27453;27454;27455;27456;27457 32884;32885;32886;32887;32888;32889;32890;32891;32892 32891 9 EVIELPLTNPELFQR Unmodified 1796.9672 0.96724989 1357 P62333 PSMC6 26S protease regulatory subunit 10B yes yes 0 0 0 0 By MS/MS 4 0 1 1 78.352 78.317 2 2.2852E-06 26397 20211116_3442_TMUAki_TMT10x_S_F4 100.02 72.924 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5030 1357 4687 27458 32893 32893 1 EVIELPVKHPELFEALGIAQPK Unmodified 2456.3679 0.36789699 1337 P62195;P62195-2 PSMC5 26S protease regulatory subunit 8 yes no 0 0 0 1 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 77.026 77.037 4 1.1272E-10 26601 20211116_3435_TMUAki_TMT10x_P_F7 116.21 101.44 20604000 37114000 57943 29051000 19975000 34355000 26371000 19154000 18095000 20105000 24757000 19183000 34601000 1475100 30286000 19300000 34330000 26158000 20270000 19007000 19596000 23676000 4 4 1 4 4 4 4 4 4 4 4 17350000 31317000 57943 24099000 15115000 30415000 21599000 15766000 15069000 16510000 20641000 16154000 29195000 1310400 25189000 14649000 30266000 21367000 16792000 15813000 16094000 19739000 3 3 1 3 3 3 3 3 3 3 3 3253700 5796600 0 4952300 4860900 3939900 4771900 3387200 3026800 3594900 4115800 3028500 5405700 164710 5096600 4650300 4063700 4790900 3478000 3194200 3502400 3936700 1 1 0 1 1 1 1 1 1 1 1 7424600000 4401700000 3022900000 5031 1337 4688 27459;27460;27461;27462;27463 32894;32895;32896;32897 32895 4 EVIIMATNCENCGHR Oxidation (M) 1818.7811 0.78112216 319 O75312 ZPR1 Zinc finger protein ZPR1 yes yes 0 0 1 0 By matching By MS/MS 4 0 2 1 1 33.658 33.707 3 0.019962 8241 20211116_3442_TMUAki_TMT10x_S_F4 43.408 36.679 58415 77470 8522 93768 48823 68680 62154 67334 86115 46617 70046 54453 72348 12651 94133 47665 71483 63090 67908 85988 46382 68068 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 58415 77470 8522 93768 48823 68680 62154 67334 86115 46617 70046 54453 72348 12651 94133 47665 71483 63090 67908 85988 46382 68068 1 1 1 1 1 1 1 1 1 1 1 50895000 49020000 1875200 5032 319 4689 27464;27465 32898 32898 236 1 EVIPVNVPEAQEEMK Oxidation (M) 1726.8448 0.8447515 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 1 0 By MS/MS By MS/MS 2 0 2 1 1 54.856 54.628 3 0.0066501 16226 20211116_3440_TMUAki_TMT10x_S_F2 56.872 37.033 3298100 5557000 25161 6126000 4518800 5436300 3880200 4217500 4321800 3857400 4441100 3071000 5187400 309810 6199100 4318000 5553300 3982900 4338800 4381600 3782100 4280500 2 2 1 2 2 2 2 2 2 2 2 1809300 3084700 25161 3386400 3029000 3975000 2499700 2194700 2253100 2022600 2546900 1684800 2879500 190540 3442200 2892500 3973200 2555600 2316100 2313400 1982500 2447800 1 1 1 1 1 1 1 1 1 1 1 1488700 2472200 0 2739600 1489800 1461300 1380500 2022800 2068700 1834700 1894200 1386100 2307900 119270 2756900 1425500 1580100 1427300 2022700 2068200 1799600 1832700 1 1 0 1 1 1 1 1 1 1 1 536770000 377930000 158840000 5033 542 4690 27466;27467 32899;32900 32900 475 2 EVLAGRPLFPHVLCHNCAVEFNFGQK Unmodified 3038.5007 0.50073562 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 1 By MS/MS By MS/MS 2.74 0.714 1 5 11 2 11 8 67.938 67.703 3;4;5;6 6.9834E-88 22438 20211116_3441_TMUAki_TMT10x_S_F3 262.55 252.57 505830000 789480000 5736300 759730000 560610000 785060000 534010000 445810000 310680000 442590000 543540000 470990000 736560000 41670000 777530000 536920000 790580000 536140000 470290000 334090000 432390000 517120000 49 49 21 49 49 49 49 49 49 49 49 363380000 542260000 4975800 526700000 362600000 645810000 399250000 308280000 215940000 313590000 378730000 338360000 505930000 31354000 540200000 348710000 642980000 397380000 330630000 233480000 306050000 360310000 30 30 10 30 30 30 30 30 30 30 30 142460000 247230000 760490 233040000 198010000 139250000 134760000 137530000 94738000 129000000 164810000 132630000 230640000 10316000 237340000 188200000 147600000 138760000 139660000 100620000 126340000 156820000 19 19 11 19 19 19 19 19 19 19 19 105680000000 54858000000 50818000000 5034 1474 4691 27468;27469;27470;27471;27472;27473;27474;27475;27476;27477;27478;27479;27480;27481;27482;27483;27484;27485;27486 32901;32902;32903;32904;32905;32906;32907;32908;32909;32910;32911;32912;32913;32914;32915;32916;32917;32918;32919;32920;32921;32922;32923;32924;32925;32926;32927;32928;32929;32930;32931;32932;32933;32934;32935;32936;32937;32938;32939;32940;32941;32942;32943;32944;32945;32946;32947;32948;32949 32944 49 EVLDQVCYR Unmodified 1180.5547 0.55465791 1810 Q15459;Q15459-2 SF3A1 Splicing factor 3A subunit 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 44.394 44.428 2 0.00015696 13717 20211116_3430_TMUAki_TMT10x_P_F3 137.14 104.29 749470 1378000 32752 1740600 2813200 2376600 1147500 1247100 1441000 1162600 1290000 698080 1287200 121560 1759600 2657500 2356500 1260100 1322500 1447700 1138900 1249100 1 1 1 1 1 1 1 1 1 1 1 749470 1378000 32752 1740600 2813200 2376600 1147500 1247100 1441000 1162600 1290000 698080 1287200 121560 1759600 2657500 2356500 1260100 1322500 1447700 1138900 1249100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 66014000 66014000 0 5035 1810 4692 27487 32950 32950 1 EVLDQVER Unmodified 986.50327 0.50327426 645 P12931-2;P12931 SRC Proto-oncogene tyrosine-protein kinase Src yes no 0 0 0 0 By MS/MS 2 0 1 1 37.451 37.55 2 0.032328 9171 20211116_3440_TMUAki_TMT10x_S_F2 62.558 28.555 253730 438780 806.64 525300 259240 198970 227460 296230 380730 254570 359340 236250 409750 21865 524900 247820 225010 237130 295030 379860 250350 347300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 253730 438780 806.64 525300 259240 198970 227460 296230 380730 254570 359340 236250 409750 21865 524900 247820 225010 237130 295030 379860 250350 347300 1 1 1 1 1 1 1 1 1 1 1 6612800 0 6612800 5036 645 4693 27488 32951 32951 1 EVLEALGEVMVSRPR Unmodified 1683.8978 0.89779012 2241 Q8NE71;Q8NE71-2 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 0 1 By MS/MS 7 0 1 1 71.206 71.602 3 9.3429E-05 24228 20211116_3435_TMUAki_TMT10x_P_F7 83.061 54.764 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5037 2241 4694 27489 32952 32952 1 EVLEALGEVMVSRPRE Oxidation (M) 1828.9353 0.93529784 2241 Q8NE71;Q8NE71-2 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 1 2 By MS/MS By MS/MS 4 0.816 1 1 1 1 2 58.224 58.244 3 0.055924 19451 20211116_3430_TMUAki_TMT10x_P_F3 43.408 22.745 7454500 12059000 154220 13487000 9397600 7630500 7658900 11919000 10855000 11043000 10510000 6942000 11258000 788960 13570000 8976500 8231000 7958600 11876000 10891000 10821000 10150000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7454500 12059000 154220 13487000 9397600 7630500 7658900 11919000 10855000 11043000 10510000 6942000 11258000 788960 13570000 8976500 8231000 7958600 11876000 10891000 10821000 10150000 2 2 2 2 2 2 2 2 2 2 2 1132700000 0 1132700000 5038 2241 4695 27490;27491;27492 32953;32954;32955 32953 2637 3 EVLEALGEVMVSRPRE Unmodified 1812.9404 0.94038322 2241 Q8NE71;Q8NE71-2 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 0 2 By matching By MS/MS 5.33 0.943 1 2 1 2 72.288 72.218 3 9.0929E-30 23979 20211116_3442_TMUAki_TMT10x_S_F4 168.41 145.61 3735200 6003100 4121.1 5663000 4939600 3764800 4439500 3194100 2701800 3347300 4386200 3477800 5600200 324630 5772800 4723600 3939600 4475500 3281000 2884400 3262900 4179000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3735200 6003100 4121.1 5663000 4939600 3764800 4439500 3194100 2701800 3347300 4386200 3477800 5600200 324630 5772800 4723600 3939600 4475500 3281000 2884400 3262900 4179000 2 2 1 2 2 2 2 2 2 2 2 612530000 267190000 345340000 5039 2241 4695 27493;27494;27495 32956;32957;32958 32956 3 EVLELDSIR Unmodified 1072.5764 0.57643921 946 P36404 ARL2 ADP-ribosylation factor-like protein 2 yes yes 0 0 0 0 By MS/MS 3 0 1 1 55.974 55.584 2 3.1311E-05 19408 20211116_3441_TMUAki_TMT10x_S_F3 111.82 20.756 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5040 946 4696 27496 32959 32959 1 EVLGEHIVPSDQQQIVR Unmodified 1946.0221 0.022139011 2214 Q8N9N8 EIF1AD Probable RNA-binding protein EIF1AD yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 46.652 46.644 3 2.1608E-11 13025 20211116_3431_TMUAki_TMT10x_P_F4 135.72 122.3 2967100 5011600 22880 5637700 5195600 5803500 3505100 5132200 5446100 4333000 4950800 2762400 4678700 203470 5709700 4937000 5886900 3703800 5228000 5438000 4264800 4791200 4 4 1 4 4 4 4 4 4 4 4 1821100 2789400 0 3284000 4052200 4661600 2631200 3059800 3133800 2398700 2883200 1695200 2604700 126050 3335900 3846100 4628000 2758800 3172000 3157200 2369900 2789100 2 2 0 2 2 2 2 2 2 2 2 1146000 2222200 22880 2353700 1143300 1141900 873840 2072400 2312300 1934300 2067600 1067200 2074100 77427 2373700 1090900 1258900 944990 2056000 2280700 1894800 2002100 2 2 1 2 2 2 2 2 2 2 2 1259900000 843040000 416860000 5041 2214 4697 27497;27498;27499;27500 32960;32961;32962;32963 32961 4 EVLGSLPNVFSALCLNAR Unmodified 1959.0248 0.024781548 2092 Q7Z6Z7;Q7Z6Z7-2;Q7Z6Z7-3 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 0 0 0 0 By MS/MS 4 0 1 1 80.415 80.4 3 2.0881E-17 27253 20211116_3442_TMUAki_TMT10x_S_F4 146.3 124.14 1036800 1858300 66545 1768200 1404400 1235800 1498900 991650 933760 969860 1368100 965890 1733700 153130 1802300 1353100 1286300 1498000 1019900 990090 948110 1306400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1036800 1858300 66545 1768200 1404400 1235800 1498900 991650 933760 969860 1368100 965890 1733700 153130 1802300 1353100 1286300 1498000 1019900 990090 948110 1306400 1 1 1 1 1 1 1 1 1 1 1 374130000 0 374130000 5042 2092 4698 27501 32964 32964 1 EVLHGNQR Unmodified 951.48863 0.48862725 1381 P62906 RPL10A 60S ribosomal protein L10a yes yes 0 0 0 0 By MS/MS 3 0 1 1 24.914 24.609 3 0.0063803 6976 20211116_3441_TMUAki_TMT10x_S_F3 75.213 59.581 64494 126730 468.22 87333 115270 115140 78459 117480 96655 76431 70362 60053 118110 6494.5 92293 109630 115630 82073 118100 96601 76338 68690 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 64494 126730 468.22 87333 115270 115140 78459 117480 96655 76431 70362 60053 118110 6494.5 92293 109630 115630 82073 118100 96601 76338 68690 1 1 1 1 1 1 1 1 1 1 1 3398800 0 3398800 5043 1381 4699 27502 32965 32965 1 EVLLEASEETGKR Unmodified 1459.7518 0.75183739 383 O94763;O94763-2;O94763-3 URI1 Unconventional prefoldin RPB5 interactor 1 yes no 0 0 0 1 By MS/MS By MS/MS 3 0.707 1 2 1 1 3 44.518 44.475 3 0.010563 13715 20211116_3430_TMUAki_TMT10x_P_F3 61.409 45.519 2452500 4113200 10378 4619200 2740700 2316500 2220600 3434000 3240100 2854000 3792100 2283500 3839900 205450 4642200 2614700 2527000 2311200 3417700 3271200 2811300 3641000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2452500 4113200 10378 4619200 2740700 2316500 2220600 3434000 3240100 2854000 3792100 2283500 3839900 205450 4642200 2614700 2527000 2311200 3417700 3271200 2811300 3641000 2 2 1 2 2 2 2 2 2 2 2 222280000 0 222280000 5044 383 4700 27503;27504;27505;27506 32966;32967;32968 32966 3 EVLLFPAMKPEDKK Oxidation (M) 1659.8906 0.89057948 1760 Q15046;Q15046-2 KARS Lysine--tRNA ligase yes no 0 0 1 2 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 51.437 51.628 4 0.027094 14802 20211116_3436_TMUAki_TMT10x_P_F8 44.925 25.348 40752000 67544000 402200 80245000 70823000 73442000 45483000 53165000 58498000 47556000 54600000 37947000 63073000 4094600 80864000 67291000 74782000 47864000 54910000 58804000 46676000 52792000 5 5 3 5 5 5 5 5 5 5 5 24686000 41270000 332830 48573000 57773000 62556000 34322000 34673000 37948000 31645000 35008000 22987000 38536000 2740200 49246000 54821000 62239000 36152000 36569000 38342000 31031000 33862000 4 4 2 4 4 4 4 4 4 4 4 16066000 26274000 69367 31671000 13050000 10886000 11162000 18493000 20551000 15910000 19593000 14959000 24536000 1354400 31618000 12470000 12543000 11711000 18341000 20462000 15645000 18930000 1 1 1 1 1 1 1 1 1 1 1 2853200000 2116600000 736670000 5045 1760 4701 27507;27508;27509;27510 32969;32970;32971;32972 32972 2374 4 EVLLFPAMKPEDKK Unmodified 1643.8957 0.89566485 1760 Q15046;Q15046-2 KARS Lysine--tRNA ligase yes no 0 0 0 2 By matching By MS/MS 8 0 2 1 1 58.139 58.211 4 5.0698E-10 16953 20211116_3447_TMUAki_TMT10x_S_F8 139.65 122.16 6144700 9802900 4504.6 13761000 4409700 2959400 3849300 2838200 2397200 3394800 6601300 5721400 9162000 489340 13598000 4214400 3678400 3888900 2908400 2651500 3292600 6237900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6144700 9802900 4504.6 13761000 4409700 2959400 3849300 2838200 2397200 3394800 6601300 5721400 9162000 489340 13598000 4214400 3678400 3888900 2908400 2651500 3292600 6237900 1 1 1 1 1 1 1 1 1 1 1 1507900000 1003900000 504030000 5046 1760 4701 27511;27512 32973 32973 1 EVLPALENNKEQIQK Unmodified 1751.9418 0.94176342 3123 Q9UHV9 PFDN2 Prefoldin subunit 2 yes yes 0 0 0 1 By MS/MS 5 0 2 2 51.835 52.035 3 1.1189E-09 15426 20211116_3433_TMUAki_TMT10x_P_F5 108.06 85.698 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5047 3123 4702 27513;27514 32974;32975 32974 2 EVLPGEIVEISR Unmodified 1339.7347 0.73473076 1524 Q06203 PPAT Amidophosphoribosyltransferase yes yes 0 0 0 0 By MS/MS By MS/MS 2.8 0.748 2 2 1 2 3 61.384 61.108 2 7.8271E-09 19428 20211116_3442_TMUAki_TMT10x_S_F4 150.46 123.34 13040000 21617000 119650 22375000 16887000 19989000 15693000 17102000 15135000 15444000 17769000 12143000 20174000 1221600 22737000 16168000 20446000 15963000 17484000 15515000 15152000 17060000 4 4 3 4 4 4 4 4 4 4 4 6126000 9839900 95553 9716300 8756500 12629000 8640000 7322300 6785000 7035800 8045700 5704600 9181200 633780 9964500 8399000 12566000 8712600 7704000 7028400 6883300 7722300 2 2 2 2 2 2 2 2 2 2 2 6914500 11777000 24098 12658000 8130400 7360300 7053000 9779400 8349800 8408500 9723700 6438100 10993000 587840 12772000 7768600 7879400 7250600 9779900 8486500 8268600 9337500 2 2 1 2 2 2 2 2 2 2 2 2107500000 1160400000 947140000 5048 1524 4703 27515;27516;27517;27518;27519 32976;32977;32978;32979;32980 32980 5 EVLPHVPLGVIQR Unmodified 1455.8562 0.8561833 3340 Q9Y679;Q9Y679-3 AUP1 Ancient ubiquitous protein 1 yes no 0 0 0 0 By matching By MS/MS 7.67 0.471 1 2 1 2 54.82 55.015 3 0.0012747 17835 20211116_3446_TMUAki_TMT10x_S_F7 71.219 53.488 4886000 7808600 53520 8246900 5050800 4820600 4334400 6201400 6020000 5452800 6091700 4549600 7287900 435990 8331000 4826800 5153300 4486200 6213100 6053100 5356300 5874200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4886000 7808600 53520 8246900 5050800 4820600 4334400 6201400 6020000 5452800 6091700 4549600 7287900 435990 8331000 4826800 5153300 4486200 6213100 6053100 5356300 5874200 2 2 1 2 2 2 2 2 2 2 2 818350000 184280000 634070000 5049 3340 4704 27520;27521;27522 32981;32982 32981 2 EVLPSTR Unmodified 800.43922 0.43921744 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 32.56 32.315 2 0.070965 9916 20211116_3441_TMUAki_TMT10x_S_F3 60.972 17.114 698260 1159400 0 1131500 716390 749740 929900 586000 657910 580470 853880 650110 1081700 53720 1150600 691990 783650 923650 603900 688170 567150 817640 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 698260 1159400 0 1131500 716390 749740 929900 586000 657910 580470 853880 650110 1081700 53720 1150600 691990 783650 923650 603900 688170 567150 817640 1 1 0 1 1 1 1 1 1 1 1 15014000 0 15014000 5050 2048 4705 27523 32983 32983 1 EVLQALEELAVNYDQK Unmodified 1860.9469 0.94690838 906;262 O60282;Q12840;O60282-2;P33176 KIF5C;KIF5A;KIF5B Kinesin heavy chain isoform 5C;Kinesin heavy chain isoform 5A;Kinesin-1 heavy chain no no 0 0 0 0 By MS/MS By MS/MS 3.93 1.91 2 2 2 2 2 3 1 8 6 81.557 81.547 3 1.4999E-35 28372 20211116_3429_TMUAki_TMT10x_P_F2 202.32 173.36 27506000 44072000 261240 47777000 27102000 28374000 30786000 14348000 16075000 18348000 28213000 25611000 41137000 2383800 48188000 26086000 29787000 30579000 15415000 17428000 17755000 26840000 11 11 6 11 11 11 11 11 11 11 11 13132000 19536000 143830 22199000 10321000 15588000 11870000 6716300 8046800 8825100 13388000 12229000 18239000 1155700 22359000 9941700 16089000 11841000 7339600 8543000 8532200 12750000 5 5 3 5 5 5 5 5 5 5 5 14373000 24535000 117410 25578000 16781000 12785000 18916000 7631500 8028300 9522800 14825000 13383000 22898000 1228100 25829000 16145000 13698000 18738000 8075900 8885000 9222500 14091000 6 6 3 6 6 6 6 6 6 6 6 4778500000 2309800000 2468700000 5051 262;906 4706 27524;27525;27526;27527;27528;27529;27530;27531;27532;27533;27534;27535;27536;27537 32984;32985;32986;32987;32988;32989;32990;32991;32992;32993;32994;32995;32996;32997 32985 14 EVLQECK Unmodified 904.43242 0.43241751 1485 Q01658 DR1 Protein Dr1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 45.869 45.529 3 0.10898 15301 20211116_3441_TMUAki_TMT10x_S_F3 35.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5052 1485 4707 27538 32998 32998 1 EVLQNQLGIRPPTR Unmodified 1619.9107 0.91073807 2092 Q7Z6Z7;Q7Z6Z7-2;Q7Z6Z7-3 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 0 0 0 1 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 44.879 44.731 3 9.7356E-05 13407 20211116_3429_TMUAki_TMT10x_P_F2 92.773 46.614 2906000 4550300 62967 4993300 4276300 4624400 3012100 3598800 3653000 3053700 3843500 2706200 4247500 318800 5057200 4072300 4710700 3141200 3694500 3695000 3004800 3701800 2 2 2 2 2 2 2 2 2 2 2 1816200 2654700 56491 2936800 3190400 3633300 2031500 2230800 2208800 1886100 2288100 1691500 2478100 222470 2986500 3033400 3626900 2126700 2328600 2242100 1856300 2204800 1 1 1 1 1 1 1 1 1 1 1 1089800 1895600 6475.5 2056600 1085900 991100 980530 1368000 1444200 1167600 1555400 1014800 1769400 96332 2070700 1038900 1083900 1014500 1365900 1452800 1148600 1497000 1 1 1 1 1 1 1 1 1 1 1 345360000 207610000 137750000 5053 2092 4708 27539;27540;27541 32999;33000;33001 32999 3 EVMQEVAQLSQFDEELYK Oxidation (M) 2201.0198 0.019815329 1107 P49591 SARS Serine--tRNA ligase, cytoplasmic yes yes 0 0 1 0 By MS/MS By MS/MS 1.33 0.471 4 2 3 3 77.791 77.764 2;3 3.6006E-06 25341 20211116_3428_TMUAki_TMT10x_P_F1 93.684 76.195 8407900 15149000 290490 13119000 11731000 15002000 11300000 10327000 11424000 11293000 12365000 7830400 14128000 974010 13555000 11253000 15062000 11489000 10765000 11650000 10989000 11899000 3 3 2 3 3 3 3 3 3 3 3 3849000 6992900 46404 5993400 4506600 8828700 4880700 4330400 5083700 4640900 5232900 3584100 6521400 371570 6227300 4333400 8718100 4937400 4639100 5168200 4519800 5043400 1 1 1 1 1 1 1 1 1 1 1 4558900 8155900 244090 7125800 7224800 6173300 6419400 5996800 6340600 6651600 7132300 4246300 7606400 602450 7328000 6919400 6343700 6551200 6125600 6482000 6469300 6855700 2 2 1 2 2 2 2 2 2 2 2 3670900000 1870900000 1800100000 5054 1107 4709 27542;27543;27544;27545;27546;27547 33002;33003;33004;33005 33002 1472 4 EVMQEVAQLSQFDEELYK Unmodified 2185.0249 0.024900707 1107 P49591 SARS Serine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.756 2 3 2 4 3 79.791 79.766 3 1.0015E-08 26212 20211116_3428_TMUAki_TMT10x_P_F1 117.3 100.42 9812000 16505000 25542 16954000 12548000 13259000 14225000 6674100 5451700 8072000 11616000 9135600 15402000 807010 17209000 12071000 13588000 14070000 7160000 6148800 7825900 11014000 4 4 1 4 4 4 4 4 4 4 4 5742400 9573100 25542 9947100 6745100 9099100 8114500 3801700 2927700 4421300 6681400 5346600 8934100 471990 10109000 6500700 9202800 7998700 4151200 3338600 4292500 6329100 2 2 1 2 2 2 2 2 2 2 2 4069700 6931500 0 7007000 5803300 4160100 6110800 2872500 2524000 3650700 4934200 3789000 6468100 335020 7100400 5570400 4384700 6071300 3008800 2810200 3533400 4685200 2 2 0 2 2 2 2 2 2 2 2 3928900000 1966400000 1962500000 5055 1107 4709 27548;27549;27550;27551;27552;27553;27554 33006;33007;33008;33009;33010;33011 33006 6 EVNGIPPTTTQILLEALEK Unmodified 2065.1307 0.13068641 1622 Q13332;Q13332-6;Q13332-3;Q13332-4;Q13332-2 PTPRS Receptor-type tyrosine-protein phosphatase S yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 4 4 4 4 42.57 42.88 4;5 0.00063676 10878 20211116_3447_TMUAki_TMT10x_S_F8 62.765 32.632 11253000 17189000 382360 20997000 20189000 19361000 12888000 11253000 14181000 12113000 14288000 10480000 16053000 1361300 21127000 19194000 19643000 13495000 11876000 14374000 11794000 13780000 8 8 6 8 8 8 8 8 8 8 8 8106800 12007000 270900 14912000 17449000 16799000 10364000 7897400 10059000 8605100 9870600 7549800 11215000 1002300 15036000 16566000 16798000 10873000 8500000 10240000 8375000 9527700 5 5 3 5 5 5 5 5 5 5 5 3146200 5181600 111470 6084500 2739500 2561900 2524700 3355200 4121600 3507600 4417500 2930300 4838400 359030 6090700 2628100 2845000 2621600 3375900 4133600 3419500 4252200 3 3 3 3 3 3 3 3 3 3 3 1198300000 1002800000 195470000 5056 1622 4710 27555;27556;27557;27558;27559;27560;27561;27562 33012;33013;33014;33015;33016;33017;33018 33018 7 EVNKFQMAYSNLLR Oxidation (M) 1727.8665 0.86648999 962 P37108 SRP14 Signal recognition particle 14 kDa protein yes yes 0 0 1 1 By MS/MS By MS/MS 2.25 0.433 3 1 2 2 59.316 59.025 3 0.0013484 19132 20211116_3429_TMUAki_TMT10x_P_F2 73.022 61.254 19084000 39052000 327620 23055000 35702000 57251000 28847000 68262000 63988000 54203000 42579000 17771000 36380000 2036000 25162000 34075000 56461000 30707000 68428000 62799000 53517000 41737000 5 5 4 5 5 5 5 5 5 5 5 7649300 15108000 34180 8671200 14968000 37298000 15599000 30402000 29495000 24275000 17405000 7121800 14073000 684310 9728700 14364000 36076000 16220000 31076000 28969000 23961000 17164000 2 2 1 2 2 2 2 2 2 2 2 11435000 23944000 293440 14384000 20734000 19952000 13248000 37860000 34493000 29928000 25175000 10649000 22307000 1351700 15433000 19711000 20385000 14487000 37352000 33830000 29556000 24573000 3 3 3 3 3 3 3 3 3 3 3 4521700000 3157800000 1363800000 5057 962 4711 27563;27564;27565;27566 33019;33020;33021;33022 33019 1216 4 EVNKFQMAYSNLLR Unmodified 1711.8716 0.87157537 962 P37108 SRP14 Signal recognition particle 14 kDa protein yes yes 0 0 0 1 By MS/MS By MS/MS 3 0 2 1 1 63.799 63.431 3 2.7649E-23 22616 20211116_3441_TMUAki_TMT10x_S_F3 179.97 159.72 22772000 46347000 126480 25664000 49646000 58520000 41020000 30673000 19699000 29020000 37260000 21203000 43170000 2277200 28134000 47387000 56964000 41399000 32542000 21597000 28411000 35400000 4 4 2 4 4 4 4 4 4 4 4 15291000 29828000 9536.3 16934000 31008000 47747000 33123000 19908000 13221000 19117000 24237000 14237000 27784000 1391800 18647000 29779000 46115000 32872000 21623000 14712000 18704000 23039000 3 3 1 3 3 3 3 3 3 3 3 7480500 16519000 116950 8729600 18638000 10773000 7896400 10764000 6478400 9902600 13023000 6966000 15385000 885440 9486400 17608000 10849000 8527400 10919000 6884900 9706900 12361000 1 1 1 1 1 1 1 1 1 1 1 2145900000 1125700000 1020200000 5058 962 4711 27567;27568 33023;33024;33025;33026 33026 4 EVPAVPETLK Unmodified 1081.6019 0.60192568 716 P18124 RPL7 60S ribosomal protein L7 yes yes 0 0 0 0 By MS/MS 5 0 1 1 51.722 51.908 2 0.0019167 14299 20211116_3444_TMUAki_TMT10x_S_F5 81.338 30.731 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5059 716 4712 27569 33027 33027 1 EVPAVPETLKK Unmodified 1209.6969 0.69688869 716 P18124 RPL7 60S ribosomal protein L7 yes yes 0 0 0 1 By MS/MS By MS/MS 5.8 0.748 2 2 1 4 1 46.764 46.959 3 3.5767E-05 12216 20211116_3434_TMUAki_TMT10x_P_F6 97.214 74.74 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5060 716 4713 27570;27571;27572;27573;27574 33028;33029;33030;33031;33032 33030 5 EVPCYVFDEELR Unmodified 1554.7024 0.70244436 630 P11717 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 0 0 0 0 By MS/MS 3 0 1 1 64.765 64.475 2 0.00053223 21997 20211116_3430_TMUAki_TMT10x_P_F3 84.687 62.694 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5061 630 4714 27575 33033 33033 1 EVPGPDCR Unmodified 928.40727 0.40726539 1859 Q16658 FSCN1 Fascin yes yes 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 30.081 29.974 2 0.002116 7513 20211116_3429_TMUAki_TMT10x_P_F2 113.5 96.944 1106500 1920500 4227.3 1764600 1608300 1568400 1314600 755350 838290 823750 1391500 1030200 1791500 99639 1808300 1534800 1591600 1334000 811070 893290 801700 1325200 5 5 3 5 5 5 5 5 5 5 5 752270 1269000 3621.4 1163800 1195100 1228000 879990 504500 574170 535810 923290 700470 1183700 71715 1195700 1138200 1230800 899610 550390 609890 522010 879860 3 3 2 3 3 3 3 3 3 3 3 354190 651520 605.86 600850 413280 340430 434590 250850 264130 287940 468200 329770 607750 27924 612650 396660 360860 434430 260680 283410 279690 445340 2 2 1 2 2 2 2 2 2 2 2 93035000 32798000 60237000 5062 1859 4715 27576;27577;27578;27579 33034;33035;33036;33037;33038 33036 5 EVQDGIAPR Unmodified 983.50361 0.50360861 1036 P45974;P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 0 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 32.381 32.225 2 0.0019204 8392 20211116_3429_TMUAki_TMT10x_P_F2 91.867 51.8 507380 884570 4944.4 865010 826190 804890 613980 522340 594250 514270 723070 472460 825320 51139 882940 787160 817320 633270 545090 609980 502600 693530 2 2 2 2 2 2 2 2 2 2 2 310350 511050 2134.7 497430 594290 621440 380250 310570 336530 281450 426930 288990 476810 31697 510270 564580 618450 395540 330580 347480 276080 409050 1 1 1 1 1 1 1 1 1 1 1 197030 373520 2809.7 367590 231910 183440 233720 211770 257720 232820 296140 183470 348510 19442 372660 222580 198870 237720 214510 262500 226520 284490 1 1 1 1 1 1 1 1 1 1 1 42542000 31185000 11357000 5063 1036 4716 27580;27581;27582 33039;33040 33039 2 EVQEAFLTLHK Unmodified 1313.698 0.69795133 2747 Q9C0B1 FTO Alpha-ketoglutarate-dependent dioxygenase FTO yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 55.608 55.696 3 0.00070215 16848 20211116_3433_TMUAki_TMT10x_P_F5 80.522 55.305 6961600 11537000 94181 12442000 10380000 10952000 7919300 8840200 8102500 8399100 9544400 6482700 10768000 712820 12607000 9897100 11202000 8167200 9081500 8286000 8221200 9162500 2 2 2 2 2 2 2 2 2 2 2 3352000 5694300 17434 5685200 6634300 7990600 4859900 4128300 3709700 4067400 4600300 3121200 5313300 340130 5835000 6317800 7911300 4986700 4390500 3855900 3975000 4410200 1 1 1 1 1 1 1 1 1 1 1 3609600 5842500 76748 6757000 3746100 2961700 3059400 4711800 4392800 4331700 4944100 3361500 5455100 372700 6771900 3579300 3290600 3180500 4691000 4430100 4246200 4752300 1 1 1 1 1 1 1 1 1 1 1 1019000000 616950000 402030000 5064 2747 4717 27583;27584;27585 33041;33042;33043 33041 3 EVQIEVSR Unmodified 958.50836 0.50835964 2172 Q8IZJ1;Q8IZJ1-2 UNC5B Netrin receptor UNC5B yes no 0 0 0 0 By MS/MS 2 0 1 1 35.572 35.671 2 0.0054851 8397 20211116_3440_TMUAki_TMT10x_S_F2 95.09 42.374 123230 187270 4158.6 212350 185530 146050 167300 236380 191370 209440 222840 114770 174840 14965 213860 177690 154900 171400 234970 194750 205660 213990 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 123230 187270 4158.6 212350 185530 146050 167300 236380 191370 209440 222840 114770 174840 14965 213860 177690 154900 171400 234970 194750 205660 213990 1 1 1 1 1 1 1 1 1 1 1 9938200 0 9938200 5065 2172 4718 27586 33044 33044 1 EVQMNFLNQLTSVFNPR Oxidation (M) 2052.0099 0.0098597649 1939 Q5T4S7;Q5T4S7-3;Q5T4S7-4;Q5T4S7-2;Q5T4S7-5 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 1 0 By MS/MS By MS/MS 3 0 2 1 1 79.901 79.839 3 0.0068615 28183 20211116_3430_TMUAki_TMT10x_P_F3 56.036 44.916 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5066 1939 4719 27587;27588 33045;33046 33045 2524 2 EVQQGEEFER Unmodified 1249.5575 0.55749468 474 P00568 AK1 Adenylate kinase isoenzyme 1 yes yes 0 0 0 0 By MS/MS 1 0 1 1 32.899 32.909 2 0.00057766 9116 20211116_3439_TMUAki_TMT10x_S_F1 103.69 84.376 206570 326600 6448.5 419680 177310 169200 169730 196030 208740 193100 291400 192390 305100 22726 417820 170210 188420 173760 197870 213590 188710 278540 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 206570 326600 6448.5 419680 177310 169200 169730 196030 208740 193100 291400 192390 305100 22726 417820 170210 188420 173760 197870 213590 188710 278540 1 1 1 1 1 1 1 1 1 1 1 26069000 0 26069000 5067 474 4720 27589 33047 33047 1 EVQQGEEFERR Unmodified 1405.6586 0.65860571 474 P00568 AK1 Adenylate kinase isoenzyme 1 yes yes 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 29.677 29.574 3 5.2597E-12 7753 20211116_3439_TMUAki_TMT10x_S_F1 177.83 139.08 622690 979800 4459.3 1001700 1260400 957640 701950 550660 650610 877800 826180 579790 914340 60543 1019700 1194500 969150 739630 590200 670370 843820 791560 3 3 1 3 3 3 3 3 3 3 3 441960 677180 4459.3 698090 1051900 797200 488790 397670 447650 656140 588870 411530 631960 48948 712170 994710 797040 523970 432220 462220 630170 563690 2 2 1 2 2 2 2 2 2 2 2 180730 302620 0 303600 208460 160440 213160 152990 202970 221660 237310 168250 282380 11595 307510 199750 172110 215660 157980 208150 213650 227860 1 1 0 1 1 1 1 1 1 1 1 74202000 53546000 20655000 5068 474 4721 27590;27591;27592;27593 33048;33049;33050 33050 3 EVQSPEGMISLR Oxidation (M) 1360.6657 0.66566492 2817 Q9H6R4;Q9H6R4-2;Q9H6R4-4 NOL6 Nucleolar protein 6 yes no 0 0 1 0 By MS/MS 3 0 1 1 41.778 41.833 2 0.0052542 12646 20211116_3430_TMUAki_TMT10x_P_F3 68.107 39.709 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5069 2817 4722 27594 33051 33051 2962 1 EVQTAVR Unmodified 801.43447 0.43446642 2191 Q8N257;A0A2R8Y619 HIST3H2BB Histone H2B type 3-B yes no 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 1 1 1 1 3 1 27.721 27.603 2 0.0059694 6631 20211116_3429_TMUAki_TMT10x_P_F2 105.81 31.385 1020100 1672900 66534 1349400 994870 1596800 1114700 812220 919050 884720 1191800 950350 1559800 145640 1403100 960930 1593800 1118300 867570 953220 861080 1141200 4 4 3 4 4 4 4 4 4 4 4 788590 1284600 64572 1058100 803110 1340800 833320 661740 704340 703060 919310 734730 1197800 125180 1099700 774700 1333200 839700 708320 729820 684940 880170 3 3 2 3 3 3 3 3 3 3 3 231560 388320 1961.5 291260 191750 256030 281350 150470 214710 181660 272470 215620 361980 20469 303460 186230 260630 278640 159250 223400 176140 261060 1 1 1 1 1 1 1 1 1 1 1 19423000 12982000 6441100 5070 2191 4723 27595;27596;27597;27598 33052;33053;33054;33055 33053 4 EVQTNDLK Unmodified 945.47673 0.47672516 1305 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 0 0 By MS/MS 3 0 1 1 35.553 35.313 2 0.00042759 11154 20211116_3441_TMUAki_TMT10x_S_F3 146.23 75.312 561190 964620 0 832780 540060 466210 621430 365370 412780 380920 627450 522500 899600 43331 853400 519690 495290 619630 377040 436680 371380 598630 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 561190 964620 0 832780 540060 466210 621430 365370 412780 380920 627450 522500 899600 43331 853400 519690 495290 619630 377040 436680 371380 598630 1 1 0 1 1 1 1 1 1 1 1 31938000 0 31938000 5071 1305 4724 27599 33056 33056 1 EVRPDTQYTGRK Unmodified 1448.7372 0.73719038 237 O43709;O43709-3 WBSCR22 Probable 18S rRNA (guanine-N(7))-methyltransferase yes no 0 0 0 2 By MS/MS 5 0 1 1 29.155 29.085 4 0.038914 6368 20211116_3433_TMUAki_TMT10x_P_F5 53.001 34.172 184000 287110 0 263570 363560 262870 337190 124410 201870 139710 213950 171320 267820 17125 270530 347890 264720 339220 133940 211720 135820 206010 1 1 0 1 1 1 1 1 1 1 1 184000 287110 0 263570 363560 262870 337190 124410 201870 139710 213950 171320 267820 17125 270530 347890 264720 339220 133940 211720 135820 206010 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3739100 3739100 0 5072 237 4725 27600 33057 33057 1 EVSAYIK Unmodified 808.43307 0.43306943 1520 Q05639 EEF1A2 Elongation factor 1-alpha 2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 43.331 43.453 2 0.0028214 10870 20211116_3444_TMUAki_TMT10x_S_F5 121.52 50.491 9878000 15219000 56757 17469000 10994000 13688000 12074000 8997400 11031000 9938300 12276000 9197600 14210000 868910 17606000 10571000 14072000 12158000 9412800 11312000 9667500 11803000 4 4 3 4 4 4 4 4 4 4 4 4240100 6299900 3976.5 7331800 6837400 7943800 5155400 3798500 4573200 4240300 5093000 3947800 5882400 373050 7415900 6512800 7961700 5299200 4084500 4696400 4123100 4897000 2 2 1 2 2 2 2 2 2 2 2 5637900 8919500 52780 10138000 4156800 5743900 6918600 5198900 6458200 5698000 7182700 5249800 8327400 495870 10190000 4058400 6110300 6859200 5328300 6616000 5544400 6906500 2 2 2 2 2 2 2 2 2 2 2 366650000 147500000 219150000 5073 1520 4726 27601;27602;27603;27604;27605 33058;33059;33060;33061;33062 33062 5 EVSAYIKK Unmodified 936.52803 0.52803245 1520 Q05639 EEF1A2 Elongation factor 1-alpha 2 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0.894 2 1 2 3 2 40.093 40.311 3 0.00074298 11523 20211116_3435_TMUAki_TMT10x_P_F7 124.23 80.984 13120000 20461000 153090 21459000 15636000 19234000 15532000 11850000 14113000 12391000 15471000 12217000 19096000 1253300 21788000 14999000 19566000 15716000 12437000 14468000 12080000 14882000 8 8 7 8 8 8 8 8 8 8 8 8071600 12151000 95209 12954000 11552000 14006000 9623600 6859600 8427800 7140700 9146300 7516000 11341000 794350 13174000 11033000 14043000 9825400 7343500 8651600 6962400 8800800 4 4 3 4 4 4 4 4 4 4 4 5048000 8310400 57881 8505600 4084500 5227900 5907900 4989900 5685500 5250700 6324500 4700600 7755200 458960 8614300 3965800 5522700 5890400 5093200 5816400 5117400 6081200 4 4 4 4 4 4 4 4 4 4 4 1005500000 687260000 318240000 5074 1520 4727 27606;27607;27608;27609;27610 33063;33064;33065;33066;33067;33068;33069;33070 33064 8 EVSDGIIAPGYEEEALTILSK Unmodified 2233.1366 0.13655965 892 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 By MS/MS By MS/MS 2.23 1.07 6 22 3 2 1 1 20 15 54.51 54.44 2;3 3.672E-55 26269 20211116_3428_TMUAki_TMT10x_P_F1 230.16 200.62 80851000 139040000 128240 124000000 96814000 127530000 102800000 71817000 75597000 83077000 101450000 75276000 129680000 5342300 127610000 92949000 128450000 103120000 76167000 79015000 80673000 97062000 32 31 11 32 32 32 32 31 32 32 32 45658000 76383000 47718 69822000 45572000 87092000 55587000 39176000 42992000 46585000 57068000 42509000 71249000 2273100 71952000 43921000 86581000 55471000 42471000 44788000 45192000 54616000 19 18 4 19 19 19 19 18 19 19 19 35193000 62657000 80527 54174000 51242000 40439000 47213000 32641000 32605000 36492000 44378000 32767000 58434000 3069200 55660000 49028000 41868000 47648000 33696000 34227000 35481000 42446000 13 13 7 13 13 13 13 13 13 13 13 30821000000 17569000000 13252000000 5075 892 4728 27611;27612;27613;27614;27615;27616;27617;27618;27619;27620;27621;27622;27623;27624;27625;27626;27627;27628;27629;27630;27631;27632;27633;27634;27635;27636;27637;27638;27639;27640;27641;27642;27643;27644;27645 33071;33072;33073;33074;33075;33076;33077;33078;33079;33080;33081;33082;33083;33084;33085;33086;33087;33088;33089;33090;33091;33092;33093;33094;33095;33096;33097;33098;33099;33100;33101;33102;33103;33104;33105;33106;33107;33108;33109;33110 33072 40 EVSEEQPVVTLEK Unmodified 1485.7563 0.75625407 1091 P49321;P49321-3;P49321-4 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 0 By MS/MS By MS/MS 2.8 0.748 2 2 1 2 3 51.795 51.624 3 1.5787E-18 16669 20211116_3430_TMUAki_TMT10x_P_F3 152.4 131.17 11942000 19232000 253360 24011000 17735000 14261000 11329000 19275000 15093000 13363000 18177000 11121000 17964000 1307300 24011000 16860000 15242000 11943000 19168000 15299000 13294000 17439000 4 4 4 4 4 4 4 4 4 4 4 3242000 4823900 115280 5757700 6342300 8087700 4614700 6062400 4290100 3506400 4910500 3019500 4504700 419640 5842700 6044800 8050000 4761100 6189500 4400700 3529800 4717700 1 1 1 1 1 1 1 1 1 1 1 8699800 14408000 138080 18253000 11393000 6173500 6714400 13213000 10803000 9856200 13267000 8101400 13459000 887680 18169000 10815000 7192400 7181900 12978000 10898000 9764400 12721000 3 3 3 3 3 3 3 3 3 3 3 1122000000 528470000 593520000 5076 1091 4729 27646;27647;27648;27649;27650 33111;33112;33113;33114;33115 33112 5 EVSFQSTGESEWK Unmodified 1512.6733 0.67325272 1535 Q07021 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes yes 0 0 0 0 By MS/MS 3 0 1 1 54.592 54.212 3 2.0739E-18 18858 20211116_3441_TMUAki_TMT10x_S_F3 148.48 104.8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5077 1535 4730 27651 33116 33116 1 EVSIEISR Unmodified 931.49746 0.4974606 410 O95185;O95185-2 UNC5C Netrin receptor UNC5C yes no 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 40.339 40.393 2 0.0044766 12059 20211116_3430_TMUAki_TMT10x_P_F3 98.009 30.106 424160 630410 11690 783410 811290 1027400 525060 588400 638380 629180 606800 395020 588820 51483 792050 771420 1021700 551070 621620 643360 612810 586340 1 1 1 1 1 1 1 1 1 1 1 424160 630410 11690 783410 811290 1027400 525060 588400 638380 629180 606800 395020 588820 51483 792050 771420 1021700 551070 621620 643360 612810 586340 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23788000 23788000 0 5078 410 4731 27652;27653;27654 33117;33118;33119 33118 3 EVSQVDTICECLLEHEEQVLR Unmodified 2585.2102 0.21015207 2300 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 76.773 76.742 3 2.4849E-44 24945 20211116_3428_TMUAki_TMT10x_P_F1 201.61 187.44 7509100 12578000 0 10975000 7961900 11195000 8723800 8890000 6637700 7492500 9186000 6990900 11730000 279500 11313000 7646900 11339000 8744600 9113200 6934400 7375100 8782500 3 3 0 3 3 3 3 3 3 3 3 4693800 7361600 0 6437900 3972800 8235100 5117500 4777400 4031100 4631100 5898500 4369600 6865700 279500 6659800 3831600 8200800 5097500 5027400 4214700 4529000 5632300 2 2 0 2 2 2 2 2 2 2 2 2815300 5216000 0 4536900 3989100 2959700 3606300 4112700 2606600 2861400 3287500 2621300 4864500 0 4652800 3815300 3138400 3647100 4085800 2719700 2846100 3150300 1 1 0 1 1 1 1 1 1 1 1 2543500000 1102200000 1441300000 5079 2300 4732 27655;27656 33120;33121;33122 33120 3 EVSSATNALR Unmodified 1046.5356 0.53563702 567 P09012 SNRPA U1 small nuclear ribonucleoprotein A yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 32.977 32.871 2 1.2331E-11 10128 20211116_3441_TMUAki_TMT10x_S_F3 216.42 94.884 991270 1731800 11023 1685900 2026000 1698700 1379600 1154900 1331600 1082300 1563200 923050 1615800 106360 1723300 1927000 1717500 1431700 1199500 1365000 1060000 1500800 2 2 1 2 2 2 2 2 2 2 2 626290 1115100 11023 1095500 1606000 1358400 953960 785350 881150 713140 1077200 583220 1040500 75918 1122900 1524200 1354700 999480 825240 906560 699470 1033000 1 1 1 1 1 1 1 1 1 1 1 364980 616700 0 590400 419930 340330 425690 369550 450450 369150 485990 339830 575350 30444 600430 402750 362790 432260 374250 458430 360550 467720 1 1 0 1 1 1 1 1 1 1 1 73041000 49914000 23127000 5080 567 4733 27657;27658 33123;33124 33124 2 EVSTYIK Unmodified 838.44363 0.44363412 1416 P68104;Q5VTE0 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 0 0 0 0 By MS/MS By MS/MS 4.62 1.32 2 2 2 1 1 3 5 41.808 41.842 2 0.0012641 11122 20211116_3431_TMUAki_TMT10x_P_F4 143 54.361 21471000 34380000 147480 36778000 24723000 27374000 23918000 15551000 19746000 17681000 24888000 19993000 32089000 1930800 37209000 23693000 28201000 24174000 16471000 20453000 17180000 23849000 5 5 2 5 5 5 5 5 5 5 5 12303000 19294000 117780 20528000 18729000 18986000 12916000 8906100 11183000 9833600 13906000 11456000 18008000 1206100 20831000 17818000 19210000 13351000 9591600 11549000 9565800 13330000 2 2 1 2 2 2 2 2 2 2 2 9168600 15086000 29692 16250000 5994300 8388200 11002000 6644400 8563200 7847200 10982000 8537000 14081000 724710 16378000 5874100 8991100 10823000 6879600 8904200 7614400 10519000 3 3 1 3 3 3 3 3 3 3 3 1426900000 784050000 642870000 5081 1416 4734 27659;27660;27661;27662;27663;27664;27665;27666 33125;33126;33127;33128;33129;33130;33131;33132 33126 8 EVSTYIKK Unmodified 966.5386 0.53859714 1416 P68104;Q5VTE0 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 0 0 0 1 By MS/MS By MS/MS 6.8 1.17 1 1 1 2 3 2 38.659 38.894 3 0.0014078 10653 20211116_3435_TMUAki_TMT10x_P_F7 108.98 34.85 6047200 9535100 82583 9287200 6616600 7576600 6358700 4591700 5323700 4691200 6768000 5631100 8896300 582840 9466400 6342600 7757000 6431400 4822100 5512500 4577600 6484200 5 5 4 5 5 5 5 5 5 5 5 3471700 5228300 38827 5093900 4754700 5232400 3578700 2460100 2813600 2546000 3580900 3232700 4878100 338520 5208200 4531600 5259600 3667800 2643700 2923000 2483000 3430700 3 3 2 3 3 3 3 3 3 3 3 2575500 4306700 43756 4193200 1861900 2344200 2780100 2131600 2510200 2145200 3187100 2398400 4018200 244310 4258200 1811000 2497400 2763600 2178400 2589500 2094600 3053500 2 2 2 2 2 2 2 2 2 2 2 1363900000 1090600000 273360000 5082 1416 4735 27667;27668;27669;27670;27671 33133;33134;33135;33136;33137 33134 5 EVSVELAK Unmodified 873.48075 0.48074791 3303 Q9Y4R8 TELO2 Telomere length regulation protein TEL2 homolog yes yes 0 0 0 0 By MS/MS 4 0 1 1 45.812 46.014 2 0.018087 13157 20211116_3442_TMUAki_TMT10x_S_F4 69.812 28.159 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5083 3303 4736 27672 33138 33138 1 EVSVPTFSWEEIQK Unmodified 1677.825 0.82500233 450 O95864;O95864-3 FADS2 Fatty acid desaturase 2 yes no 0 0 0 0 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 76.383 76.386 3 1.8535E-09 24738 20211116_3445_TMUAki_TMT10x_S_F6 130.15 112.02 9673800 16236000 83013 15377000 11948000 13359000 12131000 10134000 9068900 9935200 12398000 9007400 15147000 851210 15718000 11462000 13661000 12201000 10461000 9478100 9711500 11856000 4 4 2 4 4 4 4 4 4 4 4 2454500 4312700 51713 4175300 2838300 5570600 3411400 3365700 3082200 3343700 3419100 2285700 4023700 257060 4290100 2739000 5539300 3420200 3532600 3162000 3266600 3287800 1 1 1 1 1 1 1 1 1 1 1 7219400 11924000 31300 11202000 9110100 7788400 8719500 6768700 5986600 6591500 8978500 6721700 11123000 594140 11427000 8723300 8122000 8780400 6928100 6316100 6444900 8568600 3 3 1 3 3 3 3 3 3 3 3 1785300000 292420000 1492900000 5084 450 4737 27673;27674;27675;27676;27677 33139;33140;33141 33141 3 EVTDTQMPLVAPVILPEMYK 2 Oxidation (M) 2305.1586 0.15855742 2533 Q96P70 IPO9 Importin-9 yes yes 0 0 2 0 By MS/MS 6 0 1 1 74.962 74.902 3 0.0041391 24042 20211116_3445_TMUAki_TMT10x_S_F6 56.017 37.185 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5085 2533 4738 27678 33142 33142 2784;2785 1 EVTFVPGLYK Unmodified 1151.6227 0.62266112 625;1500 Q02880;Q02880-2;P11388;P11388-2;P11388-3;P11388-4 TOP2B;TOP2A DNA topoisomerase 2-beta;DNA topoisomerase 2-alpha no no 0 0 0 0 By MS/MS By MS/MS 7 0.632 1 3 1 3 2 65.681 66.014 2;3 6.4387E-06 20141 20211116_3447_TMUAki_TMT10x_S_F8 106.04 78.921 29732000 51914000 0 44828000 36864000 45790000 39827000 40194000 39016000 36862000 41641000 27680000 48415000 2207400 46247000 35398000 46462000 40218000 41049000 39820000 36139000 40088000 4 4 0 4 4 4 4 4 4 4 4 13109000 21861000 0 19305000 17235000 26554000 16368000 16926000 17702000 14899000 17550000 12204000 20389000 964890 19983000 16492000 26388000 16689000 17634000 17945000 14634000 16934000 2 2 0 2 2 2 2 2 2 2 2 16623000 30053000 0 25523000 19630000 19236000 23459000 23268000 21313000 21963000 24092000 15476000 28026000 1242500 26264000 18907000 20075000 23529000 23415000 21875000 21504000 23154000 2 2 0 2 2 2 2 2 2 2 2 2873000000 2012700000 860310000 5086 1500;625 4739 27679;27680;27681;27682;27683 33143;33144;33145;33146;33147;33148 33148 6 EVTPEGLQMVK Oxidation (M) 1245.6275 0.6274885 767 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 1 0 By MS/MS By MS/MS 4 0 3 2 1 46.632 46.757 3 4.995E-05 13024 20211116_3431_TMUAki_TMT10x_P_F4 92.538 72.88 1622200 2285200 0 3026900 3741600 3375400 1999900 1886000 2317200 1649100 2151300 1510400 2135100 157500 3040800 3543400 3383700 2129500 1985700 2337500 1620400 2080400 1 1 0 1 1 1 1 1 1 1 1 1622200 2285200 0 3026900 3741600 3375400 1999900 1886000 2317200 1649100 2151300 1510400 2135100 157500 3040800 3543400 3383700 2129500 1985700 2337500 1620400 2080400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 345400000 345400000 0 5087 767 4740 27684;27685;27686 33149;33150;33151 33150 889 3 EVTPEGLQMVKK Unmodified 1357.7275 0.72753689 767 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 0 1 By MS/MS 6 0 1 1 49.395 49.546 3 0.0010689 13618 20211116_3445_TMUAki_TMT10x_S_F6 71.513 47.162 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5088 767 4741 27687 33152 33152 1 EVTSHFQVTLNDIQLQMEQHNER Oxidation (M) 2811.3246 0.32460498 981 P40222 TXLNA Alpha-taxilin yes yes 0 0 1 0 By MS/MS 4 0 1 1 51.516 51.623 4 1.4879E-07 15515 20211116_3442_TMUAki_TMT10x_S_F4 91.883 75.761 4071700 6817200 26576 8137400 4130400 3286100 3280700 3938700 3727400 3753900 5198900 3790800 6366100 299340 8135700 3936600 3661500 3386100 3966100 3824700 3673800 4969600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4071700 6817200 26576 8137400 4130400 3286100 3280700 3938700 3727400 3753900 5198900 3790800 6366100 299340 8135700 3936600 3661500 3386100 3966100 3824700 3673800 4969600 2 2 1 2 2 2 2 2 2 2 2 313670000 0 313670000 5089 981 4742 27688 33153;33154 33154 1259 2 EVTVTPNAAWGGEGSLGCGIGYGYLHR Unmodified 2820.329 0.32896207 2631 Q9BQQ3;Q9BQQ3-3 GORASP1 Golgi reassembly-stacking protein 1 yes no 0 0 0 0 By MS/MS 7 0 1 1 67.793 68.324 3 3.4396E-10 22835 20211116_3435_TMUAki_TMT10x_P_F7 93.966 85.147 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5090 2631 4743 27689 33155 33155 1 EVTWEVLEGEVEK Unmodified 1545.7563 0.75625407 509 P05455 SSB Lupus La protein yes yes 0 0 0 0 By MS/MS By MS/MS 1.9 0.943 4 4 1 1 5 5 75.328 75.258 2;3 1.0554E-35 26259 20211116_3439_TMUAki_TMT10x_S_F1 260.6 218.27 77052000 121240000 328280 126580000 79741000 80249000 90025000 32224000 32538000 43165000 75555000 71740000 113150000 6027200 128060000 76692000 83531000 88999000 35514000 37144000 41706000 71553000 12 12 5 12 12 12 12 12 12 12 12 49520000 76295000 192420 80221000 51509000 61886000 60130000 21715000 21304000 28698000 48139000 46106000 71206000 3926800 81288000 49592000 63274000 59340000 24315000 24324000 27741000 45607000 8 8 4 8 8 8 8 8 8 8 8 27533000 44941000 135860 46361000 28232000 18363000 29895000 10509000 11234000 14467000 27416000 25634000 41940000 2100500 46777000 27100000 20257000 29659000 11200000 12820000 13966000 25946000 4 4 1 4 4 4 4 4 4 4 4 7999800000 5291800000 2708000000 5091 509 4744 27690;27691;27692;27693;27694;27695;27696;27697;27698;27699 33156;33157;33158;33159;33160;33161;33162;33163;33164;33165;33166;33167;33168;33169 33166 14 EVTYELDHPGFQIR Unmodified 1702.8315 0.83148469 12 A5YKK6;A5YKK6-3;A5YKK6-2;A5YKK6-4 CNOT1 CCR4-NOT transcription complex subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 53.412 53.418 3 1.2561E-19 15746 20211116_3431_TMUAki_TMT10x_P_F4 175.88 147.12 29124000 48781000 508850 54099000 36744000 41421000 31329000 37670000 35757000 34941000 39563000 27120000 45538000 2882700 54624000 35119000 42895000 32199000 38408000 36318000 34237000 38047000 10 10 8 10 10 10 10 10 10 10 10 12181000 19557000 163800 21649000 19790000 25587000 16193000 15826000 14620000 14314000 15698000 11343000 18256000 1244600 21997000 18893000 25604000 16564000 16538000 14980000 14042000 15110000 4 4 3 4 4 4 4 4 4 4 4 16942000 29224000 345050 32449000 16954000 15835000 15136000 21844000 21137000 20627000 23865000 15777000 27281000 1638100 32627000 16226000 17291000 15634000 21870000 21337000 20196000 22937000 6 6 5 6 6 6 6 6 6 6 6 1867700000 864040000 1003600000 5092 12 4745 27700;27701;27702;27703;27704;27705 33170;33171;33172;33173;33174;33175;33176;33177;33178;33179 33171 10 EVVAEVVK Unmodified 871.50148 0.50148335 294 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 0 0 0 0 By MS/MS 3 0 1 1 45.71 45.37 2 0.020069 15233 20211116_3441_TMUAki_TMT10x_S_F3 72.23 42.854 2328600 4118400 44020 4698600 2036800 1889900 2172700 2216500 2440800 2229300 3313500 2168500 3845100 229990 4710400 1959000 2105900 2205000 2237500 2502300 2176700 3169400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2328600 4118400 44020 4698600 2036800 1889900 2172700 2216500 2440800 2229300 3313500 2168500 3845100 229990 4710400 1959000 2105900 2205000 2237500 2502300 2176700 3169400 1 1 1 1 1 1 1 1 1 1 1 55489000 0 55489000 5093 294 4746 27706 33180 33180 1 EVVAGSHELGQDYEHVTMLQER Oxidation (M) 2542.1758 0.17581547 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 1 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 45.792 45.572 4 6.0186E-20 13796 20211116_3429_TMUAki_TMT10x_P_F2 154.6 146.65 1139000 2226800 33213 2369000 1920500 2701200 1459800 2513700 2788700 2031000 1964300 1060800 2078400 136330 2411700 1831900 2727100 1546000 2550800 2749600 2003500 1920400 2 2 2 2 2 2 2 2 2 2 2 541180 1154200 19845 1181900 1356600 2125300 918470 1115300 1109700 1041400 1047600 504040 1077100 74783 1217900 1290900 2084200 960470 1182700 1118400 1020100 1012500 1 1 1 1 1 1 1 1 1 1 1 597860 1072600 13368 1187100 563890 575910 541330 1398500 1679000 989610 916670 556770 1001300 61549 1193800 540930 642890 585490 1368100 1631300 983350 907880 1 1 1 1 1 1 1 1 1 1 1 1329100000 586950000 742120000 5094 1475 4747 27707;27708;27709 33181;33182 33181 1997 2 EVVDPTK Unmodified 786.41233 0.41233399 41 CON__P12763 yes yes 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 31.495 31.362 2 0.0085849 9551 20211116_3429_TMUAki_TMT10x_P_F2 100.15 18.191 + 3009500 5146100 3639.8 4635900 4972900 6426000 3884200 4035700 5431000 3779000 4856800 2802100 4800000 276070 4792200 4740800 6382300 4044700 4216200 5437100 3701300 4702900 4 4 2 4 4 4 4 4 4 4 4 2190500 3781000 1385.2 3250400 4042900 5557700 3145200 2908900 4036600 2670000 3580800 2039500 3526100 204550 3387900 3853800 5460000 3264900 3084100 4051400 2617500 3468300 2 2 1 2 2 2 2 2 2 2 2 819050 1365100 2254.5 1385500 929970 868300 739020 1126800 1394400 1109000 1276000 762630 1273900 71516 1404300 887040 922270 779900 1132100 1385700 1083800 1234600 2 2 1 2 2 2 2 2 2 2 2 269100000 147870000 121240000 5095 41 4748 27710;27711;27712 33183;33184;33185;33186 33184 4 EVVEEAENGR Unmodified 1130.5204 0.52038089 516 P06454;P06454-2 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 32.334 32.349 2 3.7826E-25 8840 20211116_3439_TMUAki_TMT10x_S_F1 260.19 214.45 1947800 3413500 6517.5 2993200 1850200 2106000 2357500 794960 1308200 1205100 2078700 1813600 3183600 153330 3070000 1786400 2170700 2332300 886700 1404100 1160100 1981400 3 3 1 3 3 3 3 3 3 3 3 900710 1626700 0 1423900 1082500 1192900 981020 287750 632550 547560 907220 838630 1517100 75261 1463500 1035300 1209100 989610 346020 668510 524070 866660 1 1 0 1 1 1 1 1 1 1 1 1047100 1786800 6517.5 1569300 767710 913170 1376400 507210 675650 657580 1171500 974920 1666500 78065 1606500 751100 961620 1342700 540680 735620 636030 1114800 2 2 1 2 2 2 2 2 2 2 2 150870000 60372000 90501000 5096 516 4749 27713;27714 33187;33188;33189 33189 3 EVVETPLLHPER Unmodified 1417.7565 0.75652884 945 P35998;P35998-2 PSMC2 26S protease regulatory subunit 7 yes no 0 0 0 0 By MS/MS 3 0 1 1 42.151 42.205 3 5.628E-09 12793 20211116_3430_TMUAki_TMT10x_P_F3 141.13 115.01 568850 911580 22360 1039600 1569200 1486100 926440 931000 926960 742710 872810 529820 851080 82011 1058200 1489800 1473900 973350 968960 941080 733130 843640 2 2 2 2 2 2 2 2 2 2 2 568850 911580 22360 1039600 1569200 1486100 926440 931000 926960 742710 872810 529820 851080 82011 1058200 1489800 1473900 973350 968960 941080 733130 843640 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37506000 37506000 0 5097 945 4750 27715 33190;33191 33190 2 EVVGTFK Unmodified 778.4225 0.42250475 1223 P54687;P54687-5;P54687-3;P54687-4 BCAT1 Branched-chain-amino-acid aminotransferase, cytosolic yes no 0 0 0 0 By MS/MS 5 0 1 1 43.272 43.405 2 0.0084064 10877 20211116_3444_TMUAki_TMT10x_S_F5 101.99 34.954 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5098 1223 4751 27716 33192 33192 1 EVVHTVSLHEIDVINSR Unmodified 1946.0221 0.022139011 3221 Q9Y230;Q9Y230-2 RUVBL2 RuvB-like 2 yes no 0 0 0 0 By MS/MS 4 0 1 1 47.397 47.57 4 8.5697E-07 13853 20211116_3442_TMUAki_TMT10x_S_F4 101.68 82.105 974870 1826800 0 2086200 1069600 925870 891290 1485100 1666200 1246700 1482900 907620 1705600 72314 2092600 1020400 1027300 937390 1474600 1654600 1227400 1436200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 974870 1826800 0 2086200 1069600 925870 891290 1485100 1666200 1246700 1482900 907620 1705600 72314 2092600 1020400 1027300 937390 1474600 1654600 1227400 1436200 1 1 0 1 1 1 1 1 1 1 1 67902000 0 67902000 5099 3221 4752 27717 33193 33193 1 EVVIVSATR Unmodified 972.5604 0.56039521 795 P24752;P24752-2 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 3.56 1.26 2 3 2 1 1 3 6 38.798 38.809 2 6.3188E-06 10139 20211116_3431_TMUAki_TMT10x_P_F4 171.99 113.82 9128300 13320000 0 14181000 13898000 14576000 9305400 9447400 9107200 8821800 11192000 8498600 12432000 737320 14412000 13205000 14709000 9672900 9845600 9347600 8641600 10732000 7 7 0 7 7 7 7 7 7 7 7 6730500 9596200 0 10340000 11204000 12326000 6861200 6933200 6642300 6491800 8094900 6266200 8957000 545490 10526000 10629000 12313000 7179900 7308100 6818500 6358400 7763900 4 4 0 4 4 4 4 4 4 4 4 2397700 3723900 0 3840400 2693400 2249600 2444200 2514200 2464900 2330000 3097500 2232500 3475200 191830 3885800 2575600 2395800 2493000 2537400 2529100 2283200 2968500 3 3 0 3 3 3 3 3 3 3 3 563100000 280380000 282710000 5100 795 4753 27718;27719;27720;27721;27722;27723;27724;27725;27726 33194;33195;33196;33197;33198;33199;33200;33201 33197 8 EVVNKDVLDVYIEHR Unmodified 1826.9527 0.95266246 913 P33993;P33993-2 MCM7 DNA replication licensing factor MCM7 yes no 0 0 0 1 By MS/MS By MS/MS 4.75 0.829 2 1 1 1 3 56.532 56.591 3;4 3.992E-19 17587 20211116_3442_TMUAki_TMT10x_S_F4 162.64 140.8 5468500 9660300 181610 8301100 7302000 9306200 6923800 9598700 9435800 8945900 8523100 5093100 9009000 648310 8579600 7003000 9425100 7120700 9725000 9457000 8763900 8250100 3 3 3 3 3 3 3 3 3 3 3 1405700 2265700 58655 2214200 2073700 3822500 2218400 2514100 2202300 1979800 2051200 1309300 2114000 180560 2286500 1995600 3765500 2242100 2606200 2235800 1955500 1983400 1 1 1 1 1 1 1 1 1 1 1 4062800 7394600 122960 6086900 5228300 5483700 4705400 7084600 7233500 6966100 6471900 3783800 6895100 467750 6293000 5007400 5659600 4878500 7118800 7221200 6808400 6266700 2 2 2 2 2 2 2 2 2 2 2 1854800000 926150000 928660000 5101 913 4754 27727;27728;27729;27730 33202;33203;33204;33205 33204 4 EVVVSVPQR Unmodified 1011.5713 0.57129425 2286 Q8TEM1 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 0 0 0 0 By MS/MS 4 0 1 1 38.581 38.623 2 0.00201 9839 20211116_3431_TMUAki_TMT10x_P_F4 90.709 38.306 1473500 2041600 0 2649100 3594300 2977700 1808500 1838600 1884800 1545800 2166900 1371900 1907300 148930 2664600 3401300 2987600 1930200 1918000 1924100 1521800 2081600 1 1 0 1 1 1 1 1 1 1 1 1473500 2041600 0 2649100 3594300 2977700 1808500 1838600 1884800 1545800 2166900 1371900 1907300 148930 2664600 3401300 2987600 1930200 1918000 1924100 1521800 2081600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 45828000 45828000 0 5102 2286 4755 27731 33206 33206 1 EVYEHVYETVDISSSPEVR Unmodified 2237.0488 0.048807271 2955 Q9NUP9 LIN7C Protein lin-7 homolog C yes yes 0 0 0 0 By MS/MS 1.5 0.5 1 1 2 55.495 55.371 3 4.4034E-07 16221 20211116_3428_TMUAki_TMT10x_P_F1 100.45 88.836 2617700 4419200 57094 4274900 3673400 5851000 3299000 3269700 3034100 2869800 3147800 2437700 4123000 285020 4394800 3516300 5805400 3357700 3442700 3102300 2819300 3033000 2 2 2 2 2 2 2 2 2 2 2 2617700 4419200 57094 4274900 3673400 5851000 3299000 3269700 3034100 2869800 3147800 2437700 4123000 285020 4394800 3516300 5805400 3357700 3442700 3102300 2819300 3033000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 520540000 520540000 0 5103 2955 4756 27732;27733 33207;33208 33207 2 EVYELLDSPGK Unmodified 1248.6238 0.62378333 767 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 0 0 By MS/MS By MS/MS 3.11 0.737 2 4 3 5 4 63.591 63.365 2;3 2.0033E-14 22638 20211116_3441_TMUAki_TMT10x_S_F3 161.17 133.65 41092000 64568000 201740 84404000 55616000 55747000 39587000 42016000 47279000 41607000 53160000 38261000 60323000 3726200 84276000 52931000 58250000 41231000 43399000 47970000 40653000 51100000 13 13 8 13 13 13 13 13 13 13 13 20703000 32067000 129310 41156000 38806000 41407000 25140000 20148000 23093000 20294000 25603000 19277000 29956000 2041100 41348000 36870000 41689000 26152000 21562000 23672000 19814000 24621000 7 7 4 7 7 7 7 7 7 7 7 20389000 32500000 72430 43247000 16809000 14340000 14447000 21868000 24185000 21313000 27557000 18984000 30367000 1685100 42928000 16061000 16561000 15079000 21837000 24298000 20839000 26479000 6 6 4 6 6 6 6 6 6 6 6 3823200000 2684300000 1138800000 5104 767 4757 27734;27735;27736;27737;27738;27739;27740;27741;27742 33209;33210;33211;33212;33213;33214;33215;33216;33217;33218;33219;33220;33221;33222 33217 14 EVYLHAIVR Unmodified 1098.6186 0.61857879 820 P26640 VARS Valine--tRNA ligase yes yes 0 0 0 0 By MS/MS 6 1 1 1 2 41.039 41.417 3 1.8657E-05 12200 20211116_3446_TMUAki_TMT10x_S_F7 105.52 67.217 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5105 820 4758 27743;27744 33223;33224 33224 2 EWCDAFL Unmodified 939.37965 0.37965365 344 O75531 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 79.115 79.045 2 0.022481 25917 20211116_3428_TMUAki_TMT10x_P_F1 81.716 69.811 1423900 2473400 25342 2712100 2046300 1315800 1791000 917900 819510 970970 1857200 1326000 2308800 150390 2729000 1957200 1417600 1799900 954930 913040 946110 1759500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1423900 2473400 25342 2712100 2046300 1315800 1791000 917900 819510 970970 1857200 1326000 2308800 150390 2729000 1957200 1417600 1799900 954930 913040 946110 1759500 1 1 1 1 1 1 1 1 1 1 1 556870000 0 556870000 5106 344 4759 27745;27746;27747 33225;33226;33227 33225 3 EWFLQAAK Unmodified 991.51272 0.51271674 522 P06744;P06744-2 GPI Glucose-6-phosphate isomerase yes no 0 0 0 0 By MS/MS 8 0 1 1 63.622 63.803 2 0.0019538 19714 20211116_3436_TMUAki_TMT10x_P_F8 133.55 92.519 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5107 522 4760 27748 33228 33228 1 EWFLQAAKDPSAVAK Unmodified 1659.8621 0.86205654 522 P06744;P06744-2 GPI Glucose-6-phosphate isomerase yes no 0 0 0 1 By MS/MS By matching 8 0 3 2 1 64.672 64.744 3 0.022761 20134 20211116_3436_TMUAki_TMT10x_P_F8 46.319 35.464 10690000 17032000 0 21091000 15067000 17207000 14148000 6557000 5787000 7374900 11443000 9952300 15908000 817440 21171000 14416000 17530000 14140000 7228700 6453900 7169000 10864000 1 1 0 1 1 1 1 1 1 1 1 10690000 17032000 0 21091000 15067000 17207000 14148000 6557000 5787000 7374900 11443000 9952300 15908000 817440 21171000 14416000 17530000 14140000 7228700 6453900 7169000 10864000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1129600000 479650000 649900000 5108 522 4761 27749;27750;27751 33229;33230 33229 2 EWIPRPPEK Unmodified 1150.6135 0.61349341 1025 P43034;P43034-2 PAFAH1B1 Platelet-activating factor acetylhydrolase IB subunit alpha yes no 0 0 0 1 By MS/MS 6 0 1 1 46.744 46.827 3 0.070943 12164 20211116_3434_TMUAki_TMT10x_P_F6 49.3 26.065 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5109 1025 4762 27752 33231 33231 1 EWTPCGPHQGQDEGRGPAPGSGTR Unmodified 2533.1153 0.1152809 2016 Q6SPF0 SAMD1 Atherin yes yes 0 0 0 1 By MS/MS 4 0 1 1 31.25 31.284 4 2.317E-60 6898 20211116_3431_TMUAki_TMT10x_P_F4 233.91 207.92 74822 125760 551.83 181200 361660 223670 152100 92746 115570 81346 148160 69670 117550 10735 181580 341540 222300 164110 100560 120330 79916 141910 1 1 1 1 1 1 1 1 1 1 1 74822 125760 551.83 181200 361660 223670 152100 92746 115570 81346 148160 69670 117550 10735 181580 341540 222300 164110 100560 120330 79916 141910 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31529000 31529000 0 5110 2016 4763 27753 33232 33232 1 EWVSMAGPR Oxidation (M) 1047.4808 0.48076468 1114 P49736 MCM2 DNA replication licensing factor MCM2 yes yes 0 0 1 0 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 36.583 36.669 2 0.0039691 8428 20211116_3444_TMUAki_TMT10x_S_F5 82.529 65.289 1522600 2537500 24525 3050600 3322600 2680000 1895700 1706100 1983200 1539300 2211500 1417900 2369700 174300 3070300 3151500 2731200 2000200 1778800 2021800 1510300 2126300 3 3 3 3 3 3 3 3 3 3 3 933260 1556900 9886.5 1858000 2824900 2290400 1427300 1077300 1283000 978860 1368500 869030 1453900 113080 1880700 2674100 2279300 1516400 1153600 1314600 960060 1317500 1 1 1 1 1 1 1 1 1 1 1 589350 980660 14639 1192600 497680 389660 468400 628810 700200 560470 843060 548850 915850 61220 1189700 477350 451860 483820 625210 707260 550200 808850 2 2 2 2 2 2 2 2 2 2 2 99722000 66739000 32983000 5111 1114 4764 27754;27755;27756 33233;33234;33235 33235 1480 3 EYAENIGDGRSPEFR Unmodified 1738.7911 0.79107644 2328 Q8WYA6;Q8WYA6-4;Q8WYA6-3;Q8WYA6-2 CTNNBL1 Beta-catenin-like protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 38.892 38.632 3 3.1729E-14 12439 20211116_3441_TMUAki_TMT10x_S_F3 148.25 119.71 1454700 2188800 33512 2989400 1991300 1798800 1429600 2268800 2858400 1807500 2291900 1354700 2045400 159350 2975300 1897300 1916500 1523700 2269300 2825300 1784300 2228400 3 3 3 3 3 3 3 3 3 3 3 426180 583230 19468 752550 1312600 1109600 641150 675870 821300 509330 646850 396960 544850 65891 761110 1242900 1098600 691030 704090 821460 504300 629400 1 1 1 1 1 1 1 1 1 1 1 1028500 1605600 14045 2236900 678690 689150 788420 1593000 2037100 1298200 1645000 957750 1500500 93460 2214200 654370 817840 832640 1565200 2003900 1280000 1599000 2 2 2 2 2 2 2 2 2 2 2 209890000 141880000 68010000 5112 2328 4765 27757;27758;27759 33236;33237;33238;33239 33238 4 EYATEVDVDFVR Unmodified 1441.6725 0.67252444 1391;1557 P63010;P63010-2;P63010-3;Q10567;Q10567-3;Q10567-2;Q10567-4 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 no no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 58.949 58.707 2 2.2464E-45 19648 20211116_3439_TMUAki_TMT10x_S_F1 270.72 250.95 2925400 4919100 32342 5074100 3347400 4194900 3345000 3341300 3145400 3208400 3769500 2724100 4590600 278590 5152300 3211500 4308500 3387000 3436300 3230800 3138900 3617000 2 2 2 2 2 2 2 2 2 2 2 1395000 2172600 17810 2198400 1631000 2640900 1644800 1495900 1502000 1495900 1700300 1299000 2027300 135560 2247600 1565300 2637300 1663200 1578800 1541300 1461000 1634100 1 1 1 1 1 1 1 1 1 1 1 1530400 2746500 14532 2875700 1716400 1554000 1700300 1845400 1643400 1712500 2069200 1425100 2563200 143030 2904800 1646200 1671200 1723700 1857600 1689500 1678000 1982900 1 1 1 1 1 1 1 1 1 1 1 514720000 302560000 212160000 5113 1391;1557 4766 27760;27761;27762;27763 33240;33241;33242;33243 33242 4 EYATEVDVDFVRK Unmodified 1569.7675 0.76748745 1391;1557 P63010;P63010-2;P63010-3;Q10567;Q10567-3;Q10567-2;Q10567-4 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 no no 0 0 0 1 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 53.88 53.937 3 1.8452E-14 15942 20211116_3431_TMUAki_TMT10x_P_F4 161.48 142.15 15718000 23194000 249630 27512000 18549000 23957000 16351000 15897000 14625000 15150000 18798000 14636000 21659000 1521500 27708000 17742000 24444000 16647000 16547000 15102000 14827000 18005000 3 3 2 3 3 3 3 3 3 3 3 11749000 17083000 249630 19669000 15601000 20538000 12569000 11758000 10699000 11317000 13993000 10942000 15950000 1260700 19896000 14898000 20671000 12850000 12385000 11083000 11071000 13396000 2 2 2 2 2 2 2 2 2 2 2 3968300 6111200 0 7843000 2947900 3419800 3782900 4139000 3926200 3833500 4805300 3694500 5708800 260830 7812700 2844000 3772800 3797900 4162800 4019200 3756600 4608300 1 1 0 1 1 1 1 1 1 1 1 917620000 679440000 238180000 5114 1391;1557 4767 27764;27765;27766 33244;33245;33246 33244 3 EYCISSDDLFSLPYCPGK Unmodified 2149.9336 0.93364286 1871 Q16881;Q16881-3;Q16881-4;Q16881-5;Q16881-2;Q16881-6;Q16881-7 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 5.8 0.748 2 2 1 3 2 78.179 78.189 3 1.0722E-08 25369 20211116_3445_TMUAki_TMT10x_S_F6 117 100.87 13916000 21542000 51941 22393000 15912000 19880000 18175000 12033000 10320000 12191000 16769000 12955000 20104000 945520 22747000 15299000 20231000 18075000 12635000 11071000 11900000 15977000 3 3 1 3 3 3 3 3 3 3 3 8106900 12605000 51941 12766000 7879300 15044000 10271000 7258600 6643800 7876400 10015000 7546900 11762000 498790 13046000 7604100 15011000 10181000 7791400 7037200 7667000 9556800 2 2 1 2 2 2 2 2 2 2 2 5809200 8936500 0 9626900 8032800 4835500 7904900 4774300 3675900 4314700 6754100 5408400 8341300 446730 9700600 7694700 5220200 7894100 4843500 4033900 4232900 6420200 1 1 0 1 1 1 1 1 1 1 1 4109400000 2231200000 1878200000 5115 1871 4768 27767;27768;27769;27770;27771 33247;33248;33249;33250 33250 4 EYDELAETQGKLEEK Unmodified 1780.8367 0.83668923 265 O60341;O60341-2 KDM1A Lysine-specific histone demethylase 1A yes no 0 0 0 1 By MS/MS 3 0 1 1 52.937 52.786 3 0.00056647 17244 20211116_3430_TMUAki_TMT10x_P_F3 76.574 64.289 1768600 2782100 47587 4238900 5203600 4823000 2695700 2319500 2368300 1988400 2521100 1647100 2601400 239090 4230200 4929300 4821100 2855400 2474700 2429100 1955600 2427300 1 1 1 1 1 1 1 1 1 1 1 1768600 2782100 47587 4238900 5203600 4823000 2695700 2319500 2368300 1988400 2521100 1647100 2601400 239090 4230200 4929300 4821100 2855400 2474700 2429100 1955600 2427300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 193320000 193320000 0 5116 265 4769 27772 33251 33251 1 EYEATLEECCAK Unmodified 1501.6065 0.60649506 38 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS 2.25 0.829 1 1 2 3 1 44.745 44.596 3 3.5472E-09 11869 20211116_3428_TMUAki_TMT10x_P_F1 148.28 134.32 + 10248000 14306000 59700 14986000 21038000 15727000 13310000 13050000 14003000 12375000 14077000 9541900 13352000 972040 15252000 19976000 15916000 13927000 13384000 14218000 12114000 13577000 5 5 3 5 5 5 5 5 5 5 5 7263100 9969300 52232 10347000 18076000 13542000 10230000 9449100 10305000 8959900 9700200 6762300 9303800 717900 10577000 17132000 13506000 10789000 9799100 10459000 8770900 9376200 4 4 2 4 4 4 4 4 4 4 4 2985200 4337200 7467.9 4639500 2962400 2185300 3080400 3601300 3698100 3415500 4376600 2779600 4048200 254140 4675000 2843900 2409400 3137500 3584500 3759200 3343400 4201000 1 1 1 1 1 1 1 1 1 1 1 1009800000 843430000 166340000 5117 38 4770 27773;27774;27775;27776 33252;33253;33254;33255;33256 33253 5 EYEATLEECCAKDDPHACYSTVFDK Unmodified 3037.2416 0.24158813 38 CON__P02769 yes yes 0 0 0 1 By MS/MS By MS/MS 3.67 1.4 1 2 4 4 2 2 8 7 56.929 56.836 3;4;5 6.3014E-35 17218 20211116_3431_TMUAki_TMT10x_P_F4 167.61 159.22 + 252710000 336780000 2716300 303350000 387110000 319260000 287040000 637520000 525250000 543090000 369700000 235300000 314130000 23084000 312060000 368680000 331410000 303760000 629290000 518410000 534300000 361450000 31 31 17 31 31 31 31 31 31 31 31 99111000 131360000 1470300 118350000 156530000 231540000 189980000 243240000 204050000 214350000 136820000 92286000 122530000 9599600 123350000 150960000 229150000 191390000 245850000 204590000 210540000 134070000 11 11 8 11 11 11 11 11 11 11 11 153600000 205420000 1246000 185000000 230580000 87722000 97057000 394280000 321200000 328740000 232880000 143020000 191600000 13485000 188710000 217710000 102250000 112370000 383440000 313820000 323760000 227380000 20 20 9 20 20 20 20 20 20 20 20 41952000000 25092000000 16860000000 5118 38 4771 27777;27778;27779;27780;27781;27782;27783;27784;27785;27786;27787;27788;27789;27790;27791 33257;33258;33259;33260;33261;33262;33263;33264;33265;33266;33267;33268;33269;33270;33271;33272;33273;33274;33275;33276;33277;33278;33279;33280;33281;33282;33283;33284;33285;33286;33287;33288 33265 32 EYEDNDEVHIEVHNPR Unmodified 1993.8766 0.87659699 3155 Q9UKF6 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 yes yes 0 0 0 0 By MS/MS By MS/MS 1.78 0.786 4 3 2 4 5 33.637 33.589 3;4 6.0063E-81 7391 20211116_3428_TMUAki_TMT10x_P_F1 331.14 319.12 1763300 2771600 20877 2869700 2805100 2621000 1889600 1837600 2129400 1642800 2360900 1642000 2586600 176250 2916900 2667600 2667800 1972000 1902000 2164000 1612500 2270300 7 7 5 7 7 7 7 7 7 7 7 1081800 1708000 13255 1720900 2145900 2098200 1306100 1116400 1305400 1024700 1441000 1007400 1593800 113370 1760300 2037000 2092200 1368800 1181900 1332800 1004600 1385900 3 3 2 3 3 3 3 3 3 3 3 681490 1063600 7622.5 1148800 659200 522770 583410 721180 824050 618090 919920 634590 992750 62879 1156500 630600 575630 603190 720150 831200 607910 884440 4 4 3 4 4 4 4 4 4 4 4 460700000 292880000 167820000 5119 3155 4772 27792;27793;27794;27795;27796;27797;27798;27799;27800 33289;33290;33291;33292;33293;33294;33295;33296 33289 8 EYELLSDELNQK Unmodified 1479.7093 0.70930387 906 P33176 KIF5B Kinesin-1 heavy chain yes yes 0 0 0 0 By MS/MS 2 0 1 1 65.223 64.99 3 0.02644 20435 20211116_3440_TMUAki_TMT10x_S_F2 54.005 33.624 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5120 906 4773 27801 33297 33297 1 EYERENVDTFEASVK Unmodified 1814.8323 0.83227255 1641 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog yes yes 0 0 0 1 By MS/MS By MS/MS 2.75 1.09 1 2 1 2 2 46.264 46.225 3 7.0695E-07 14417 20211116_3430_TMUAki_TMT10x_P_F3 115.38 93.846 9538000 14826000 54451 19784000 20830000 19701000 11584000 14754000 15931000 13020000 15119000 8881000 13853000 974780 19831000 19742000 19964000 12368000 15198000 15988000 12787000 14610000 4 4 2 4 4 4 4 4 4 4 4 6497800 9847800 8751.5 13119000 18672000 17662000 9890600 10076000 10920000 8965800 10263000 6049900 9201200 692490 13221000 17682000 17542000 10523000 10595000 11041000 8802200 9920700 3 3 1 3 3 3 3 3 3 3 3 3040200 4978200 45699 6664100 2157900 2039100 1693700 4677300 5010500 4054200 4855900 2831100 4651500 282290 6610200 2060200 2421900 1845000 4603800 4946700 3985200 4689100 1 1 1 1 1 1 1 1 1 1 1 671790000 378030000 293750000 5121 1641 4774 27802;27803;27804;27805 33298;33299;33300;33301 33299 4 EYFGAFGEIENIELPMDTK Oxidation (M) 2218.014 0.014001669 151;152 O14979;O14979-3;O14979-2 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like no no 0 0 1 0 By MS/MS By MS/MS 3 1.37 3 4 4 5 1 1 12 6 79.036 79.006 2;3;4 1.2139E-11 27376 20211116_3429_TMUAki_TMT10x_P_F2 123.64 95.99 47605000 80470000 446810 73115000 51885000 64582000 60381000 37574000 40232000 45044000 55229000 44327000 75060000 4117300 74981000 49980000 65711000 60179000 39789000 42343000 43684000 52813000 13 13 7 13 13 13 13 13 13 13 13 23574000 38735000 115500 34867000 21563000 38361000 26830000 18386000 18295000 20951000 24792000 21950000 36130000 1740800 35895000 20805000 38415000 26675000 19778000 19216000 20356000 23715000 7 7 2 7 7 7 7 7 7 7 7 24031000 41735000 331300 38248000 30322000 26221000 33551000 19188000 21938000 24093000 30436000 22378000 38930000 2376500 39086000 29175000 27296000 33504000 20011000 23128000 23329000 29098000 6 6 5 6 6 6 6 6 6 6 6 20036000000 10253000000 9782600000 5122 151;152 4775 27806;27807;27808;27809;27810;27811;27812;27813;27814;27815;27816;27817;27818;27819;27820;27821;27822;27823 33302;33303;33304;33305;33306;33307;33308;33309;33310;33311;33312;33313;33314;33315;33316 33303 104 15 EYFGAFGEIENIELPMDTK Unmodified 2202.0191 0.019087047 151;152 O14979;O14979-3;O14979-2 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like no no 0 0 0 0 By MS/MS By MS/MS 3.44 1.42 1 1 3 2 1 1 4 5 80.061 80.039 2;3 4.1823E-24 29247 20211116_3441_TMUAki_TMT10x_S_F3 164.81 152.18 15412000 26655000 123770 24703000 15095000 18127000 18975000 8253100 8169500 11113000 15973000 14350000 24864000 1250400 25241000 14569000 18651000 18709000 8975100 9060800 10735000 15167000 5 5 2 5 5 5 5 5 5 5 5 8427600 13882000 38220 12929000 7450200 12461000 9099400 5360700 5193900 6876100 9108600 7846200 12950000 596390 13250000 7179300 12564000 9022800 5854100 5593800 6653100 8665600 3 3 1 3 3 3 3 3 3 3 3 6984800 12773000 85552 11775000 7644400 5666300 9875200 2892300 2975600 4236400 6864000 6504100 11915000 653980 11991000 7390200 6086900 9686600 3121000 3467100 4082100 6501000 2 2 1 2 2 2 2 2 2 2 2 8928300000 4940600000 3987700000 5123 151;152 4775 27824;27825;27826;27827;27828;27829;27830;27831;27832 33317;33318;33319;33320;33321;33322;33323 33321 7 EYFGEFGEIEAIELPMDPK Oxidation (M) 2229.0188 0.018752696 2601 Q99729-3;Q99729-2;Q99729;Q99729-4 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 0 0 1 0 By MS/MS 1 0 1 1 79.285 79.285 3 2.9004E-05 26020 20211116_3428_TMUAki_TMT10x_P_F1 79.97 71.027 1966400 3178300 19583 2924800 1940800 4365300 2648400 2409200 2409000 2946200 2894900 1831000 2964700 180920 3023300 1879900 4314300 2641900 2564300 2478400 2855300 2777500 1 1 1 1 1 1 1 1 1 1 1 1966400 3178300 19583 2924800 1940800 4365300 2648400 2409200 2409000 2946200 2894900 1831000 2964700 180920 3023300 1879900 4314300 2641900 2564300 2478400 2855300 2777500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 660390000 660390000 0 5124 2601 4776 27833 33324 33324 2838 1 EYFGGFGEVESIELPMDNK Oxidation (M) 2175.9671 0.96705148 1675 Q14103;Q14103-3;Q14103-4;Q14103-2 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes no 0 0 1 0 By MS/MS By MS/MS 3.08 1.38 3 1 3 4 2 8 5 77.806 77.771 2;3 3.1203E-40 26188 20211116_3442_TMUAki_TMT10x_S_F4 199.7 187.9 29742000 55932000 760900 43688000 37503000 65121000 42764000 45789000 48564000 49500000 45515000 27697000 52145000 3210000 45754000 36133000 64585000 43282000 47642000 49044000 48191000 44001000 10 10 6 10 10 10 10 10 10 10 10 18489000 34301000 404040 28885000 21452000 46367000 25175000 27622000 30060000 29939000 27729000 17218000 31986000 1914900 30112000 20685000 45736000 25493000 29100000 30284000 29145000 26822000 5 5 3 5 5 5 5 5 5 5 5 11253000 21631000 356860 14802000 16050000 18754000 17589000 18166000 18504000 19561000 17785000 10480000 20159000 1295000 15642000 15448000 18848000 17790000 18542000 18760000 19046000 17179000 5 5 3 5 5 5 5 5 5 5 5 15989000000 10293000000 5696300000 5125 1675 4777 27834;27835;27836;27837;27838;27839;27840;27841;27842;27843;27844;27845;27846 33325;33326;33327;33328;33329;33330;33331;33332;33333;33334;33335;33336 33335 2242 12 EYFGGFGEVESIELPMDNK Unmodified 2159.9721 0.97213685 1675 Q14103;Q14103-3;Q14103-4;Q14103-2 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 1.11 1 2 1 2 3 3 79.034 79.001 3 2.6617E-12 27847 20211116_3439_TMUAki_TMT10x_S_F1 126.19 115.24 21564000 36105000 297240 34942000 25582000 34421000 28233000 19530000 16516000 21961000 26608000 20079000 33686000 1956500 35721000 24603000 34763000 28137000 20681000 17673000 21348000 25356000 7 7 4 7 7 7 7 7 7 7 7 13470000 21295000 175480 20930000 14032000 24676000 16195000 11246000 9715900 12927000 15958000 12542000 19869000 1158700 21434000 13511000 24605000 16114000 12162000 10389000 12556000 15201000 4 4 2 4 4 4 4 4 4 4 4 8093900 14811000 121750 14012000 11550000 9744900 12038000 8284500 6800000 9033800 10651000 7536800 13817000 797790 14287000 11092000 10158000 12023000 8519300 7283700 8792000 10155000 3 3 2 3 3 3 3 3 3 3 3 5141500000 2924500000 2217000000 5126 1675 4777 27847;27848;27849;27850;27851;27852 33337;33338;33339;33340;33341;33342;33343 33341 7 EYFSWEGAFQHVGK Unmodified 1683.7682 0.76815616 821 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 By MS/MS By MS/MS 5.67 1.92 1 1 2 2 2 5 2 7 8 66.663 66.839 2;3;4 3.4461E-33 22660 20211116_3446_TMUAki_TMT10x_S_F7 220.69 194.56 202560000 333080000 741380 345170000 240890000 265160000 234970000 126950000 113640000 147650000 210180000 188600000 310840000 17400000 350080000 230830000 271950000 234890000 136670000 124340000 143350000 199760000 24 24 10 24 24 24 24 24 24 24 24 116600000 187270000 416520 197480000 150890000 198530000 150550000 70432000 62232000 82950000 118570000 108570000 174780000 10211000 200750000 144680000 199300000 149990000 78449000 69174000 80497000 112640000 10 10 3 10 10 10 10 10 10 10 10 85954000 145810000 324870 147690000 89995000 66629000 84423000 56521000 51407000 64699000 91605000 80032000 136070000 7188900 149330000 86152000 72651000 84903000 58222000 55169000 62851000 87124000 14 14 7 14 14 14 14 14 14 14 14 40185000000 21669000000 18516000000 5127 821 4778 27853;27854;27855;27856;27857;27858;27859;27860;27861;27862;27863;27864;27865;27866;27867 33344;33345;33346;33347;33348;33349;33350;33351;33352;33353;33354;33355;33356;33357;33358;33359;33360;33361;33362;33363;33364;33365;33366;33367;33368;33369 33364 26 EYGFCIMDNHK Oxidation (M) 1428.5802 0.58022073 624 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 1 0 By MS/MS By MS/MS 5 1.1 2 2 1 2 3 42.356 42.483 3 0.0015617 11634 20211116_3433_TMUAki_TMT10x_P_F5 74.962 62.602 7719300 12745000 288180 15121000 14033000 13440000 8198500 10666000 11970000 10013000 11423000 7189600 11901000 996990 15233000 13326000 13733000 8737900 10965000 11993000 9805700 11037000 5 5 5 5 5 5 5 5 5 5 5 3753000 6174400 211580 7213100 10088000 9848100 4766600 4708500 5776500 4590100 5490000 3496000 5765300 597060 7324600 9551600 9754500 5144500 5043100 5822200 4487800 5304900 2 2 2 2 2 2 2 2 2 2 2 3966300 6570500 76601 7908000 3945300 3591900 3431900 5957700 6193400 5422500 5933300 3693500 6136000 399930 7908400 3774700 3978500 3593500 5922000 6170600 5317900 5731700 3 3 3 3 3 3 3 3 3 3 3 809370000 528700000 280670000 5128 624 4779 27868;27869;27870;27871;27872 33370;33371;33372;33373;33374;33375 33371 636 6 EYGFCIMDNHKER Oxidation (M) 1713.7239 0.72392485 624 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 1 1 By MS/MS 5 0 1 1 35.542 35.717 4 0.018373 7818 20211116_3444_TMUAki_TMT10x_S_F5 54.898 47.173 248500 424610 0 442540 290760 272160 236560 523990 501840 460090 421140 231360 396270 19304 447650 277310 293430 251000 518140 496060 451980 408750 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 248500 424610 0 442540 290760 272160 236560 523990 501840 460090 421140 231360 396270 19304 447650 277310 293430 251000 518140 496060 451980 408750 1 1 0 1 1 1 1 1 1 1 1 32820000 0 32820000 5129 624 4780 27873 33376 33376 636 1 EYGMIYLGK Unmodified 1072.5263 0.52631789 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 By MS/MS 7 0 2 2 61.837 62.532 2 2.3431E-05 20374 20211116_3435_TMUAki_TMT10x_P_F7 141.39 101.29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5130 2048 4781 27874;27875 33377;33378 33377 2 EYIPGQPPLSQSSDSSPTR Unmodified 2044.9702 0.97016302 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 47.232 47.154 3 2.6717E-22 13628 20211116_3442_TMUAki_TMT10x_S_F4 148.44 133.78 2002400 3148900 38302 3473700 4654400 5269300 2811500 3569300 3495300 2528900 3248400 1864600 2939500 233030 3547700 4418500 5219100 2969400 3683700 3517200 2512700 3141300 3 3 2 3 3 3 3 3 3 3 3 2002400 3148900 38302 3473700 4654400 5269300 2811500 3569300 3495300 2528900 3248400 1864600 2939500 233030 3547700 4418500 5219100 2969400 3683700 3517200 2512700 3141300 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 465490000 418120000 47369000 5131 542 4782 27876;27877;27878;27879 33379;33380;33381;33382 33382 4 EYIPTVFDNYSAQSAVDGR Unmodified 2130.9858 0.98581308 1455 P84095 RHOG Rho-related GTP-binding protein RhoG yes yes 0 0 0 0 By MS/MS 4 0 1 1 70.205 70.275 3 0.0044839 22690 20211116_3431_TMUAki_TMT10x_P_F4 57.045 40.739 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5132 1455 4783 27880 33383 33383 1 EYKVEILNPPR Unmodified 1356.7402 0.74015049 2311 Q8WVY7 UBLCP1 Ubiquitin-like domain-containing CTD phosphatase 1 yes yes 0 0 0 1 By MS/MS 6 0 1 1 47.412 47.573 3 0.04447 12809 20211116_3445_TMUAki_TMT10x_S_F6 53.448 29.843 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5133 2311 4784 27881 33384 33384 1 EYLDNVQLGHILER Unmodified 1697.8737 0.87368386 840 P28288;P28288-2 ABCD3 ATP-binding cassette sub-family D member 3 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.816 1 1 1 1 2 61.306 61.386 3 3.2114E-06 19287 20211116_3433_TMUAki_TMT10x_P_F5 102.29 89.094 3779500 5411000 12520 5597700 4578500 7501700 4467400 4340800 4128100 4134400 4541900 3519200 5049700 336200 5725800 4388100 7453800 4526800 4566800 4229100 4046400 4368600 1 1 1 1 1 1 1 1 1 1 1 3779500 5411000 12520 5597700 4578500 7501700 4467400 4340800 4128100 4134400 4541900 3519200 5049700 336200 5725800 4388100 7453800 4526800 4566800 4229100 4046400 4368600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 938620000 538740000 399880000 5134 840 4785 27882;27883;27884 33385;33386 33385 2 EYLDYDDTRYHTMQAAVDAVAR Oxidation (M) 2618.1707 0.1707301 2694 Q9BVI4 NOC4L Nucleolar complex protein 4 homolog yes yes 0 0 1 1 By matching By MS/MS 3.33 0.471 2 1 1 2 47.618 47.552 4 3.87E-07 13854 20211116_3442_TMUAki_TMT10x_S_F4 84.181 74.49 2758300 4320000 68829 5800300 2060100 2488200 2352100 3032600 3187500 2970500 3452200 2568500 4036600 249620 5763200 1984700 2751300 2396400 3054000 3215600 2903700 3322000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2758300 4320000 68829 5800300 2060100 2488200 2352100 3032600 3187500 2970500 3452200 2568500 4036600 249620 5763200 1984700 2751300 2396400 3054000 3215600 2903700 3322000 2 2 1 2 2 2 2 2 2 2 2 529140000 176740000 352400000 5135 2694 4786 27885;27886;27887 33387 33387 2897 1 EYLERFR Unmodified 1011.5138 0.51377937 91 O00459 PIK3R2 Phosphatidylinositol 3-kinase regulatory subunit beta yes yes 0 0 0 1 By MS/MS 5 0 1 1 36.404 36.566 3 0.012963 8134 20211116_3444_TMUAki_TMT10x_S_F5 83.265 0 465060 752420 0 793550 522320 409140 444240 540580 558400 486900 613780 433000 702240 37433 800890 498740 443470 458220 541390 565040 477750 590380 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 465060 752420 0 793550 522320 409140 444240 540580 558400 486900 613780 433000 702240 37433 800890 498740 443470 458220 541390 565040 477750 590380 1 1 0 1 1 1 1 1 1 1 1 19766000 0 19766000 5136 91 4787 27888 33388 33388 1 EYLLSGDISEAEHCLK Unmodified 1862.872 0.87202888 1902 Q53EL6;Q53EL6-2 PDCD4 Programmed cell death protein 4 yes no 0 0 0 0 By MS/MS By MS/MS 2.6 1.02 1 1 2 1 2 3 64.885 64.592 3 4.3005E-29 21540 20211116_3429_TMUAki_TMT10x_P_F2 186.42 155.59 39673000 61196000 227960 61375000 44042000 58091000 45642000 31888000 31919000 36809000 44479000 36940000 57103000 3410100 62551000 42274000 58793000 45788000 33892000 33519000 35747000 42518000 9 9 5 9 9 9 9 9 9 9 9 22765000 34713000 165640 35524000 22792000 39003000 25212000 18050000 18539000 20747000 24853000 21197000 32394000 1951300 36235000 21919000 39049000 25241000 19490000 19377000 20152000 23779000 5 5 3 5 5 5 5 5 5 5 5 16908000 26482000 62326 25851000 21250000 19087000 20429000 13838000 13380000 16062000 19626000 15743000 24708000 1458700 26315000 20355000 19744000 20547000 14401000 14142000 15595000 18739000 4 4 2 4 4 4 4 4 4 4 4 3441400000 1663300000 1778000000 5137 1902 4788 27889;27890;27891;27892;27893 33389;33390;33391;33392;33393;33394;33395;33396;33397 33389 9 EYLPIGGLAEFCK Unmodified 1495.7381 0.73810158 471 P00505 GOT2 Aspartate aminotransferase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 6.76 1.06 3 3 6 5 13 4 64.891 64.95 2;3 4.6492E-23 24612 20211116_3434_TMUAki_TMT10x_P_F6 215.46 165.34 87158000 144010000 301430 160380000 117140000 108990000 90907000 64167000 63511000 77311000 101430000 81151000 134430000 7455400 161690000 111640000 113190000 92735000 67896000 67156000 74964000 96669000 11 11 7 11 11 11 11 11 11 11 11 47678000 73527000 111500 87349000 54326000 78606000 50545000 34300000 34102000 41971000 53746000 44390000 68660000 3687200 88004000 51972000 79622000 50959000 37340000 36109000 40675000 51239000 7 7 4 7 7 7 7 7 7 7 7 39480000 70478000 189920 73033000 62811000 30380000 40362000 29867000 29409000 35340000 47681000 36761000 65773000 3768200 73687000 59672000 33569000 41776000 30556000 31046000 34289000 45430000 4 4 3 4 4 4 4 4 4 4 4 14920000000 7306100000 7613900000 5138 471 4789 27894;27895;27896;27897;27898;27899;27900;27901;27902;27903;27904;27905;27906;27907;27908;27909;27910 33398;33399;33400;33401;33402;33403;33404;33405;33406;33407;33408;33409;33410;33411;33412;33413 33400 16 EYLQTHWEEEECQQDVSLLR Unmodified 2591.1598 0.15983106 3126 Q9UHY7 ENOPH1 Enolase-phosphatase E1 yes yes 0 0 0 0 By MS/MS 1 0 1 1 61.019 61.019 3 3.2158E-31 18517 20211116_3428_TMUAki_TMT10x_P_F1 167.53 160.31 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5139 3126 4790 27911 33414 33414 1 EYLQTHWEEEECQQDVSLLRK Unmodified 2719.2548 0.25479408 3126 Q9UHY7 ENOPH1 Enolase-phosphatase E1 yes yes 0 0 0 1 By MS/MS By matching 3.67 0.471 1 2 2 1 57.686 57.632 4 8.1289E-28 19222 20211116_3430_TMUAki_TMT10x_P_F3 179.41 164.8 1597500 2367900 37164 2918400 2077900 2889200 1825000 1313700 1276200 1301800 1677000 1487700 2211600 173800 2937900 1988300 2909700 1847400 1414800 1336600 1271900 1605400 1 1 1 1 1 1 1 1 1 1 1 1597500 2367900 37164 2918400 2077900 2889200 1825000 1313700 1276200 1301800 1677000 1487700 2211600 173800 2937900 1988300 2909700 1847400 1414800 1336600 1271900 1605400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1045200000 853560000 191650000 5140 3126 4791 27912;27913;27914 33415 33415 1 EYLSEEVQAVHK Unmodified 1430.7042 0.70415892 1906 Q53GS9;Q53GS9-2 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 45.873 45.934 3 6.4902E-08 14301 20211116_3430_TMUAki_TMT10x_P_F3 136.7 119.76 3268700 4986300 18207 5335900 5811600 5842700 3830900 3908300 3864800 3471300 4215300 3043500 4654100 310650 5426400 5522900 5877400 3990500 4058200 3942700 3408300 4055500 2 2 1 2 2 2 2 2 2 2 2 3268700 4986300 18207 5335900 5811600 5842700 3830900 3908300 3864800 3471300 4215300 3043500 4654100 310650 5426400 5522900 5877400 3990500 4058200 3942700 3408300 4055500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 455440000 455440000 0 5141 1906 4792 27915;27916 33416;33417 33416 2 EYLTSHLEIR Unmodified 1259.651 0.65100113 3236 Q9Y2A7;Q9Y2A7-2 NCKAP1 Nck-associated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.816 1 1 1 1 2 44.207 44.343 3 0.00048791 12113 20211116_3431_TMUAki_TMT10x_P_F4 83.081 55.377 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5142 3236 4793 27917;27918;27919 33418;33419;33420 33418 3 EYNLNFSGSSTIQEVKR Unmodified 1970.9698 0.96976909 3196 Q9UNN5 FAF1 FAS-associated factor 1 yes yes 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 53.215 53.334 3 3.371E-47 15199 20211116_3445_TMUAki_TMT10x_S_F6 246.03 231.07 1791900 3294300 48325 3221900 2183200 1769700 1740500 2574500 2324100 2253400 2580800 1668800 3073700 199080 3270300 2085100 1910500 1806600 2567300 2347900 2214100 2481700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1791900 3294300 48325 3221900 2183200 1769700 1740500 2574500 2324100 2253400 2580800 1668800 3073700 199080 3270300 2085100 1910500 1806600 2567300 2347900 2214100 2481700 1 1 1 1 1 1 1 1 1 1 1 286140000 0 286140000 5143 3196 4794 27920;27921 33421;33422 33422 2 EYPDAQGFAADVR Unmodified 1437.6525 0.6524577 1766 Q15059;Q15059-2 BRD3 Bromodomain-containing protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 49.29 49.33 2 9.5356E-19 15731 20211116_3430_TMUAki_TMT10x_P_F3 181.49 130.88 1271900 2098100 0 2508800 3101900 4070100 2231900 2183200 2304000 1890800 2048600 1184200 1959300 115350 2553700 2951300 4007600 2311600 2306200 2331700 1858700 1984100 1 1 0 1 1 1 1 1 1 1 1 1271900 2098100 0 2508800 3101900 4070100 2231900 2183200 2304000 1890800 2048600 1184200 1959300 115350 2553700 2951300 4007600 2311600 2306200 2331700 1858700 1984100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 187560000 128450000 59110000 5144 1766 4795 27922;27923;27924 33423;33424 33423 2 EYPDFNFVGR Unmodified 1242.5669 0.56693715 2535 Q96PU8;Q96PU8-9;Q96PU8-8;Q96PU8-6;Q96PU8-3;Q96PU8-5 QKI Protein quaking yes no 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 61.159 61.241 2 0.010161 18102 20211116_3444_TMUAki_TMT10x_S_F5 67.081 47.468 42470000 68953000 629420 75557000 59740000 85797000 55345000 65121000 70928000 59445000 63266000 39548000 64366000 4349500 76767000 57209000 86308000 56851000 67084000 71203000 58291000 61268000 3 3 3 3 3 3 3 3 3 3 3 27776000 46725000 483640 49185000 47077000 72863000 43534000 45487000 48005000 41399000 44074000 25866000 43609000 3023900 50357000 45080000 72152000 44482000 47507000 48502000 40601000 42638000 2 2 2 2 2 2 2 2 2 2 2 14694000 22228000 145780 26371000 12663000 12934000 11810000 19634000 22923000 18046000 19192000 13682000 20757000 1325600 26409000 12130000 14156000 12368000 19577000 22701000 17690000 18630000 1 1 1 1 1 1 1 1 1 1 1 2610300000 1614700000 995640000 5145 2535 4796 27925;27926;27927;27928;27929 33425;33426 33426 2 EYPFILDAFQR Unmodified 1397.698 0.69795133 1010 P42285 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 78.256 78.287 2 2.2841E-07 25050 20211116_3434_TMUAki_TMT10x_P_F6 118.21 99.77 17087000 27907000 369010 28168000 22265000 17123000 21768000 12916000 13959000 15194000 21111000 15912000 26041000 1833000 28552000 21359000 18031000 21865000 13413000 14797000 14745000 20144000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17087000 27907000 369010 28168000 22265000 17123000 21768000 12916000 13959000 15194000 21111000 15912000 26041000 1833000 28552000 21359000 18031000 21865000 13413000 14797000 14745000 20144000 2 2 2 2 2 2 2 2 2 2 2 2760600000 469030000 2291600000 5146 1010 4797 27930;27931;27932;27933 33427;33428;33429 33427 3 EYQLVVQTTTEER Unmodified 1594.7839 0.7838658 133 O14777 NDC80 Kinetochore protein NDC80 homolog yes yes 0 0 0 0 By MS/MS 2 0 1 1 49.161 49.056 2 1.3419E-50 13893 20211116_3440_TMUAki_TMT10x_S_F2 270.06 239.32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5147 133 4798 27934 33430 33430 1 EYQPHVIVSTTGPNPFTTLTDRELEEYRR Unmodified 3447.7059 0.70589683 938 P35611;P35611-2;P35611-4;P35611-6;P35611-3 ADD1 Alpha-adducin yes no 0 0 0 2 By matching By MS/MS 6.33 0.471 2 1 1 2 61.533 61.704 5 3.6766E-08 20573 20211116_3446_TMUAki_TMT10x_S_F7 82.65 69.863 7942500 14200000 39358 14826000 7477000 9067700 8130900 12734000 14212000 11638000 12511000 7395200 13253000 644600 14995000 7185200 9675100 8401600 12729000 14132000 11411000 12121000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7942500 14200000 39358 14826000 7477000 9067700 8130900 12734000 14212000 11638000 12511000 7395200 13253000 644600 14995000 7185200 9675100 8401600 12729000 14132000 11411000 12121000 3 3 1 3 3 3 3 3 3 3 3 3083300000 1079500000 2003800000 5148 938 4799 27935;27936;27937 33431;33432;33433 33433 3 EYQTQLIQR Unmodified 1177.6091 0.60913632 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 33.881 33.953 2 0.0056453 8435 20211116_3442_TMUAki_TMT10x_S_F4 72.643 42.476 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5149 1695 4800 27938 33434 33434 1 EYQVETIVDTLCTNMLSDKEQLR Oxidation (M) 2800.3259 0.32591011 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 1 1 By MS/MS 4 0 1 1 75.531 75.561 4 0.0067466 24858 20211116_3431_TMUAki_TMT10x_P_F4 49.106 36.177 2369900 3910100 96466 3371000 2125200 4492700 2635400 2447800 2311100 2614900 3417800 2207400 3646500 282960 3493800 2056400 4461700 2636500 2597000 2404600 2547000 3262700 1 1 1 1 1 1 1 1 1 1 1 2369900 3910100 96466 3371000 2125200 4492700 2635400 2447800 2311100 2614900 3417800 2207400 3646500 282960 3493800 2056400 4461700 2636500 2597000 2404600 2547000 3262700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 817130000 817130000 0 5150 2116 4801 27939 33435 33435 2598 1 EYRDAQEFGADVR Unmodified 1554.7063 0.70628418 299 O60885;O60885-2;O60885-3 BRD4 Bromodomain-containing protein 4 yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 36.453 36.394 3 8.6668E-06 10084 20211116_3429_TMUAki_TMT10x_P_F2 95.428 71.153 383670 610560 6336.2 757310 327980 258510 311340 478130 501240 435150 573420 357280 570260 36934 754760 314440 299060 322550 473760 504180 426770 550920 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 383670 610560 6336.2 757310 327980 258510 311340 478130 501240 435150 573420 357280 570260 36934 754760 314440 299060 322550 473760 504180 426770 550920 1 1 1 1 1 1 1 1 1 1 1 19607000 0 19607000 5151 299 4802 27940;27941 33436;33437 33436 2 EYRDLTTAGAVTQCYR Unmodified 1902.8894 0.88941028 1495 Q02543 RPL18A 60S ribosomal protein L18a yes yes 0 0 0 1 By MS/MS By MS/MS 5.67 1.25 2 2 3 1 1 4 5 41.759 41.874 3 1.3833E-50 10305 20211116_3445_TMUAki_TMT10x_S_F6 225.13 192.43 14572000 23695000 76014 31856000 24347000 23627000 15155000 23803000 23139000 18051000 21328000 13568000 22141000 1056000 31799000 23116000 24581000 16100000 24020000 23126000 17867000 20630000 8 8 6 8 8 8 8 8 8 8 8 6866500 11630000 33322 14832000 18976000 19324000 11474000 11876000 11258000 8679400 10548000 6393200 10864000 725170 14972000 18005000 19242000 12024000 12355000 11437000 8608500 10197000 4 4 3 4 4 4 4 4 4 4 4 7705200 12065000 42692 17024000 5371500 4302200 3681400 11926000 11881000 9371900 10780000 7174600 11277000 330800 16827000 5110500 5338800 4076400 11665000 11689000 9258400 10433000 4 4 3 4 4 4 4 4 4 4 4 5874000000 3669200000 2204800000 5152 1495 4803 27942;27943;27944;27945;27946;27947;27948;27949;27950 33438;33439;33440;33441;33442;33443;33444;33445;33446;33447;33448 33447 11 EYSLQVLK Unmodified 978.5386 0.53859714 915 P34897;P34897-3;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 0 By matching By MS/MS 5.5 0.5 1 1 1 1 55.232 55.375 2 0.026716 16066 20211116_3445_TMUAki_TMT10x_S_F6 65.465 14.13 8368700 13824000 0 17913000 7789800 8019000 8332100 11459000 11592000 11329000 12898000 7791700 12915000 638130 17838000 7479800 8856800 8524200 11473000 11697000 11070000 12402000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8368700 13824000 0 17913000 7789800 8019000 8332100 11459000 11592000 11329000 12898000 7791700 12915000 638130 17838000 7479800 8856800 8524200 11473000 11697000 11070000 12402000 1 1 0 1 1 1 1 1 1 1 1 648370000 464250000 184120000 5153 915 4804 27951;27952 33449 33449 1 EYTAAVEAK Unmodified 980.48148 0.48147619 2593 Q99623;Q99623-2 PHB2 Prohibitin-2 yes no 0 0 0 0 By MS/MS By MS/MS 3.17 0.898 2 1 3 1 5 38.122 38.076 2 2.3087E-05 9238 20211116_3440_TMUAki_TMT10x_S_F2 141.88 88.708 2893300 4631800 2055.7 5425900 6095400 4578400 3424800 3073900 3801600 2568600 4055200 2693500 4325000 235980 5466500 5774300 4682600 3625200 3186200 3859900 2529400 3904100 2 2 1 2 2 2 2 2 2 2 2 1491200 2246800 0 2729100 4448400 3359500 1700800 1717600 2141600 1212200 2069000 1388000 2098300 114390 2759500 4193000 3346600 1882500 1814100 2156800 1204700 1998200 1 1 0 1 1 1 1 1 1 1 1 1402100 2385100 2055.7 2696700 1647000 1218900 1724000 1356300 1660000 1356400 1986200 1305500 2226700 121590 2707000 1581300 1336000 1742700 1372100 1703100 1324700 1905900 1 1 1 1 1 1 1 1 1 1 1 179600000 114800000 64800000 5154 2593 4805 27953;27954;27955;27956;27957;27958 33450;33451;33452;33453;33454 33451 5 EYTACELMNIYK Oxidation (M) 1549.6793 0.67926607 2941 Q9NSD9;Q9NSD9-2 FARSB Phenylalanine--tRNA ligase beta subunit yes no 0 0 1 0 By MS/MS 5 0 1 1 57.404 57.592 3 0.070226 17728 20211116_3433_TMUAki_TMT10x_P_F5 41.48 18.947 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5155 2941 4806 27959 33455 33455 3033 1 EYTDVYPEIIER Unmodified 1525.73 0.73003931 3191 Q9UNF1;Q9UNF1-2;Q9Y5V3;Q9Y5V3-2 MAGED2;MAGED1 Melanoma-associated antigen D2;Melanoma-associated antigen D1 yes no 0 0 0 0 By MS/MS 1 0 1 1 60.241 59.947 2 1.5057E-11 20144 20211116_3439_TMUAki_TMT10x_S_F1 128.17 109.39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5156 3191 4807 27960 33456 33456 1 EYTHSHVCVSASESK Unmodified 1719.7522 0.75224809 1560 Q12756;Q12756-3;Q12756-2 KIF1A Kinesin-like protein KIF1A yes no 0 0 0 0 By MS/MS By MS/MS 4.25 0.829 1 1 2 3 1 29.503 29.514 4 1.5927E-05 6170 20211116_3431_TMUAki_TMT10x_P_F4 99.481 87.565 195260 304060 0 315380 281570 287760 194790 127390 147550 167810 233820 181800 283770 15412 320530 267750 291250 200660 138820 155240 162220 222890 2 2 0 2 2 2 2 2 2 2 2 180060 281100 0 290600 269030 275960 181290 115480 134160 158790 217640 167650 262330 15412 295570 255700 278420 187020 126810 141510 153290 207370 1 1 0 1 1 1 1 1 1 1 1 15194 22963 0 24784 12544 11799 13504 11905 13389 9019.7 16180 14147 21434 0 24961 12052 12823 13643 12013 13725 8928 15521 1 1 0 1 1 1 1 1 1 1 1 19373000 18574000 798630 5157 1560 4808 27961;27962;27963;27964 33457;33458 33457 2 EYTINIHK Unmodified 1016.5291 0.52909508 1380 P62899;P62899-3;P62899-2 RPL31 60S ribosomal protein L31 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 40.128 40.254 3 0.0004698 9760 20211116_3444_TMUAki_TMT10x_S_F5 125.16 82.85 6972500 10559000 135800 12613000 7141600 6244900 6659900 5643000 6460200 5891000 8081000 6493100 9860700 706940 12627000 6843800 6741100 6774400 5775200 6638400 5743300 7745300 5 5 4 5 5 5 5 5 5 5 5 1468500 1923500 15453 2386700 2193900 2026600 1360100 930570 1100900 1027600 1473400 1367400 1796500 146310 2396700 2083600 2062200 1415200 1004400 1144600 999630 1409800 1 1 1 1 1 1 1 1 1 1 1 5504000 8635900 120350 10227000 4947700 4218200 5299800 4712400 5359300 4863400 6607600 5125700 8064100 560630 10231000 4760200 4679000 5359200 4770800 5493900 4743600 6335500 4 4 3 4 4 4 4 4 4 4 4 774040000 165990000 608050000 5158 1380 4809 27965;27966;27967;27968;27969;27970 33459;33460;33461;33462;33463;33464;33465 33463 7 EYTLDVYR Unmodified 1057.508 0.50802529 1219 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 47.47 47.284 2 0.0010303 14881 20211116_3430_TMUAki_TMT10x_P_F3 129.47 99.281 3513400 5931600 88654 7237400 7559900 7781600 4642800 7744700 7989000 6163500 6570100 3272000 5539700 430580 7299200 7180900 7893000 4965500 7828800 7930600 6084800 6381800 2 2 2 2 2 2 2 2 2 2 2 1828400 3040000 66475 3778300 5768300 6200400 3299700 3885200 4346400 3245400 3274300 1702900 2839400 268720 3838600 5472900 6115200 3508500 4047900 4337900 3195900 3191800 1 1 1 1 1 1 1 1 1 1 1 1685000 2891600 22178 3459100 1791600 1581200 1343200 3859600 3642500 2918200 3295800 1569100 2700300 161860 3460700 1708000 1777800 1457100 3781000 3592700 2888800 3190000 1 1 1 1 1 1 1 1 1 1 1 221980000 120090000 101890000 5159 1219 4810 27971;27972 33466;33467 33466 2 EYVAYSHTGR Unmodified 1181.5465 0.54653606 2400 Q969X5;Q969X5-2 ERGIC1 Endoplasmic reticulum-Golgi intermediate compartment protein 1 yes no 0 0 0 0 By MS/MS 4 0 1 1 28.992 29.036 3 0.047371 5995 20211116_3431_TMUAki_TMT10x_P_F4 42.061 28.553 281090 406030 0 416090 441710 496360 299800 209550 205870 203320 319040 261700 378910 21744 424970 419710 494270 308610 227340 217570 198830 304260 1 1 0 1 1 1 1 1 1 1 1 281090 406030 0 416090 441710 496360 299800 209550 205870 203320 319040 261700 378910 21744 424970 419710 494270 308610 227340 217570 198830 304260 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10865000 10865000 0 5160 2400 4811 27973 33468 33468 1 EYVEHTVK Unmodified 1003.4975 0.4974606 370 O75937 DNAJC8 DnaJ homolog subfamily C member 8 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 31.424 31.315 3 0.0077826 9564 20211116_3441_TMUAki_TMT10x_S_F3 71.379 44.05 1358700 2108800 12707 2142000 2247400 2090800 1566500 1071600 1448100 1067000 1797400 1265200 1967900 136940 2182100 2138600 2110300 1620900 1140800 1490800 1042300 1723000 2 2 2 2 2 2 2 2 2 2 2 864980 1296600 51.768 1387800 1736000 1459400 1019900 681040 926810 653650 1153400 805380 1210200 83960 1410400 1646600 1464900 1069100 730900 954980 639520 1105600 1 1 1 1 1 1 1 1 1 1 1 493730 812240 12655 754220 511380 631410 546560 390560 521300 413330 643950 459810 757690 52975 771690 491990 645400 551780 409930 535790 402740 617400 1 1 1 1 1 1 1 1 1 1 1 34473000 23575000 10898000 5161 370 4812 27974;27975 33469;33470 33470 2 EYVGIVR Unmodified 834.45995 0.45995289 294 O60832;O60832-2 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 38.015 37.941 2 0.035791 10355 20211116_3430_TMUAki_TMT10x_P_F3 76.833 41.584 3356200 5312600 301.91 6261800 6072400 4930600 3912700 3534800 3457200 3139500 4283200 3124900 4960800 309070 6301100 5767700 5073700 4067600 3652600 3566300 3082500 4106300 3 3 1 3 3 3 3 3 3 3 3 2259300 3541200 301.91 4331100 5037000 4084800 2899600 2188400 2253600 2067700 2696700 2103600 3307200 223780 4359000 4775800 4133900 3033000 2317100 2336600 2024400 2587700 2 2 1 2 2 2 2 2 2 2 2 1096900 1771500 0 1930700 1035400 845830 1013100 1346400 1203600 1071800 1586500 1021300 1653600 85291 1942200 991940 939840 1034700 1335400 1229700 1058100 1518600 1 1 0 1 1 1 1 1 1 1 1 118230000 80682000 37551000 5162 294 4813 27976;27977;27978 33471;33472;33473 33471 3 EYVNSTSEESHDEDEIRPVQQQDLHR Unmodified 3139.4079 0.40787691 2229 Q8NBU5 ATAD1 ATPase family AAA domain-containing protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 1.4 0.49 3 2 4 1 34.208 34.117 4;5 5.5684E-49 9133 20211116_3429_TMUAki_TMT10x_P_F2 200.12 195.68 439310 640430 0 867540 834170 814540 449210 485310 559840 418370 505200 408990 598440 35888 868200 789770 825670 479210 508040 562760 411360 489040 3 3 0 3 3 3 3 3 3 3 3 332320 475020 0 641820 757430 762100 390750 386590 402410 318590 361630 309410 443870 31161 644780 716890 760520 415890 409970 407430 313950 350110 2 2 0 2 2 2 2 2 2 2 2 106990 165410 0 225720 76738 52442 58460 98723 157430 99781 143580 99587 154570 4726.9 223420 72879 65153 63318 98071 155340 97407 138930 1 1 0 1 1 1 1 1 1 1 1 307410000 271450000 35953000 5163 2229 4814 27979;27980;27981;27982;27983 33474;33475;33476 33475 3 EYVTCHTCR Unmodified 1224.5016 0.50157648 738 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 0 0 0 0 By MS/MS 3 0 1 1 26.678 26.385 3 5.4423E-05 7674 20211116_3441_TMUAki_TMT10x_S_F3 137.69 124.66 32228 57287 0 53265 37721 40452 40511 35497 23188 32432 42683 30008 53440 0 54432 36239 41889 40410 36249 25040 31801 40571 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32228 57287 0 53265 37721 40452 40511 35497 23188 32432 42683 30008 53440 0 54432 36239 41889 40410 36249 25040 31801 40571 1 1 0 1 1 1 1 1 1 1 1 2648900 0 2648900 5164 738 4815 27984 33477 33477 1 EYWMDPEGEMKPGRK 2 Oxidation (M) 1883.8182 0.81821917 1215 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes yes 0 0 2 2 By MS/MS By MS/MS 5.25 0.829 1 1 2 3 1 37.704 37.75 4 0.00032299 9770 20211116_3433_TMUAki_TMT10x_P_F5 80.371 70.621 3793200 6497700 42392 8541600 15293000 9896100 6963900 2887900 3420400 3239500 5366400 3532100 6070700 506050 8589800 14456000 9840500 7389600 3300400 3703800 3149400 5116500 4 4 1 4 4 4 4 4 4 4 4 3564500 6124300 42392 7984400 15163000 9815300 6854700 2791500 3336100 3128800 5060000 3319100 5721500 490760 8041400 14332000 9728400 7278500 3202800 3609100 3041900 4827800 3 3 1 3 3 3 3 3 3 3 3 228690 373410 0 557220 130730 80777 109150 96405 84309 110640 306400 212920 349120 15285 548350 124660 112030 111080 97656 94737 107470 288700 1 1 0 1 1 1 1 1 1 1 1 854140000 829990000 24149000 5165 1215 4816 27985;27986;27987;27988 33478;33479;33480 33478 1627;1628 3 EYWMDPEGEMKPGRK Oxidation (M) 1867.8233 0.82330455 1215 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes yes 0 0 1 2 By MS/MS 5.5 0.5 1 1 2 43.135 43.213 4 0.015804 10645 20211116_3434_TMUAki_TMT10x_P_F6 50.806 39.115 4362800 7455600 0 9417400 12624000 11243000 7270900 5384900 5640700 4267000 6061000 4061900 6964200 436690 9496000 11967000 11209000 7604600 5737100 5824700 4213400 5833800 2 2 0 2 2 2 2 2 2 2 2 4362800 7455600 0 9417400 12624000 11243000 7270900 5384900 5640700 4267000 6061000 4061900 6964200 436690 9496000 11967000 11209000 7604600 5737100 5824700 4213400 5833800 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 927990000 927990000 0 5166 1215 4816 27989;27990 33481 33481 1627;1628 1 EYYDHLPELK Unmodified 1305.6241 0.62411768 620 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 By MS/MS By MS/MS 4.4 0.49 3 2 3 2 51.556 51.681 3 0.0036559 15538 20211116_3442_TMUAki_TMT10x_S_F4 67.726 43.739 1713900 3425100 92292 3964400 1795200 1777500 1597000 3235600 3605900 2976400 3185900 1596500 3198000 229240 3973600 1721900 1978400 1692500 3208400 3565600 2917600 3086300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1713900 3425100 92292 3964400 1795200 1777500 1597000 3235600 3605900 2976400 3185900 1596500 3198000 229240 3973600 1721900 1978400 1692500 3208400 3565600 2917600 3086300 1 1 1 1 1 1 1 1 1 1 1 738660000 445110000 293540000 5167 620 4817 27991;27992;27993;27994;27995 33482;33483;33484;33485 33484 4 FAAATGATPIAGR Unmodified 1202.6408 0.6407708 565 P08865 RPSA 40S ribosomal protein SA yes yes 0 0 0 0 By MS/MS By MS/MS 4.72 2.86 4 3 1 2 4 4 9 9 42.565 42.69 2;3 8.1937E-45 11052 20211116_3428_TMUAki_TMT10x_P_F1 295.31 260.37 28259000 45671000 236840 52158000 41303000 39757000 29654000 29179000 34132000 27721000 38068000 26312000 42640000 2633800 52567000 39317000 41029000 30827000 30157000 34667000 27134000 36601000 19 19 14 19 19 19 19 19 19 19 19 14867000 22781000 82589 25128000 29751000 29785000 18227000 14861000 16738000 13751000 19668000 13842000 21266000 1434700 25539000 28237000 29720000 19045000 15830000 17197000 13475000 18882000 9 9 5 9 9 9 9 9 9 9 9 13392000 22890000 154260 27030000 11551000 9972700 11427000 14318000 17394000 13970000 18400000 12470000 21374000 1199100 27028000 11080000 11309000 11782000 14328000 17470000 13659000 17718000 10 10 9 10 10 10 10 10 10 10 10 8653600000 5180300000 3473300000 5168 565 4818 27996;27997;27998;27999;28000;28001;28002;28003;28004;28005;28006;28007;28008;28009;28010;28011;28012;28013 33486;33487;33488;33489;33490;33491;33492;33493;33494;33495;33496;33497;33498;33499;33500;33501;33502;33503;33504 33486 19 FAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLK Unmodified 3574.8671 0.8671485 1324 P61960;P61960-2 UFM1 Ubiquitin-fold modifier 1 yes no 0 0 0 1 By MS/MS By MS/MS 1.67 0.471 2 4 3 3 79.25 79.224 3;4 1.3028E-24 27434 20211116_3429_TMUAki_TMT10x_P_F2 140.38 125.1 16142000 27327000 14292 22704000 16894000 21768000 20166000 12656000 12691000 14966000 19054000 15029000 25482000 1251500 23475000 16275000 22028000 20053000 13397000 13464000 14521000 18184000 5 5 2 5 5 5 5 5 5 5 5 6702600 11123000 3198 9065300 4848800 10468000 7312200 4635200 4968000 5984500 7198800 6240800 10371000 532710 9414400 4711300 10446000 7215700 5047500 5235800 5789200 6875400 1 1 1 1 1 1 1 1 1 1 1 9439400 16204000 11094 13639000 12046000 11300000 12854000 8020800 7723500 8981500 11855000 8788200 15111000 718800 14060000 11564000 11582000 12837000 8349200 8228500 8732300 11308000 4 4 1 4 4 4 4 4 4 4 4 17050000000 9039800000 8010300000 5169 1324 4819 28014;28015;28016;28017;28018;28019 33505;33506;33507;33508;33509 33505 5 FAAEHTIFASNTSSLQITSIANATTR Unmodified 2751.3828 0.38277178 1866 Q16836;Q16836-3;Q16836-2 HADH Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 68.323 68.067 3 3.2288E-74 21691 20211116_3440_TMUAki_TMT10x_S_F2 250.75 239.01 1777600 3223900 23881 2849100 1895600 2823000 2261800 1985300 2024800 2055600 2362700 1655300 3006900 170840 2932700 1828200 2858600 2267800 2062900 2082300 2004700 2268800 2 2 1 2 2 2 2 2 2 2 2 996840 1686100 23881 1452900 856020 1840600 1092300 870530 970090 1123600 1190700 928340 1572400 102930 1504500 828180 1829400 1091800 941630 1000100 1087000 1141800 1 1 1 1 1 1 1 1 1 1 1 780770 1537900 0 1396300 1039600 982350 1169600 1114800 1054700 931970 1172100 726970 1434500 67908 1428200 1000000 1029300 1176000 1121300 1082200 917740 1127000 1 1 0 1 1 1 1 1 1 1 1 972970000 492770000 480200000 5170 1866 4820 28020;28021 33510;33511 33511 2 FAAFFGNVPIFHIPGR Unmodified 1788.9464 0.94639529 2351 Q92620 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 yes yes 0 0 0 0 By MS/MS 8 0 1 1 79.706 79.692 3 0.0027028 25662 20211116_3447_TMUAki_TMT10x_S_F8 60.55 45.863 2509300 3938400 0 3878900 3069600 3037100 2988900 2718800 2427800 2788700 3231100 2336000 3674800 170340 3948700 2938300 3138800 3018600 2782500 2523000 2720700 3092100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2509300 3938400 0 3878900 3069600 3037100 2988900 2718800 2427800 2788700 3231100 2336000 3674800 170340 3948700 2938300 3138800 3018600 2782500 2523000 2720700 3092100 1 1 0 1 1 1 1 1 1 1 1 540360000 0 540360000 5171 2351 4821 28022 33512 33512 1 FAAHLIAGAPSEGSGALKPELSR Unmodified 2278.207 0.20697967 2293 Q8WTT2 NOC3L Nucleolar complex protein 3 homolog yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 1 1 1 1 54.484 54.395 4 3.6736E-15 15886 20211116_3436_TMUAki_TMT10x_P_F8 126.02 109.85 13711000 20617000 0 20592000 17725000 22624000 12749000 13349000 12625000 13344000 15087000 12763000 19238000 821210 21040000 16846000 22715000 13188000 14040000 12937000 13033000 14478000 3 3 0 3 3 3 3 3 3 3 3 12363000 18310000 0 18147000 16432000 21385000 11444000 11675000 10884000 11788000 13280000 11508000 17084000 711770 18573000 15607000 21367000 11851000 12364000 11182000 11508000 12736000 2 2 0 2 2 2 2 2 2 2 2 1347700 2307800 0 2444800 1292400 1239900 1305400 1673300 1741200 1556100 1807600 1254800 2153900 109440 2466400 1239400 1347200 1337000 1676000 1754600 1524600 1741600 1 1 0 1 1 1 1 1 1 1 1 917520000 451620000 465900000 5172 2293 4822 28023;28024 33513;33514;33515 33513 3 FAAKGEGQLGPAER Unmodified 1429.7314 0.73137672 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 37.074 37.141 3 0.062005 8339 20211116_3444_TMUAki_TMT10x_S_F5 39.074 27.804 2510400 3800000 10388 4317400 4840300 4313400 2814700 2858200 3368700 2544300 3759700 2337500 3547800 248460 4367800 4590700 4361800 2978100 2970100 3416700 2497800 3614800 2 2 1 2 2 2 2 2 2 2 2 1454100 2171100 0 2546300 3747200 3406900 1912300 1557400 1877500 1429100 2209200 1353900 2027300 150690 2584000 3546700 3376000 2034600 1673000 1923300 1401000 2120800 1 1 0 1 1 1 1 1 1 1 1 1056400 1628900 10388 1771100 1093100 906590 902340 1300800 1491300 1115300 1550600 983660 1520500 97775 1783800 1043900 985750 943490 1297100 1493400 1096900 1494000 1 1 1 1 1 1 1 1 1 1 1 117660000 74216000 43449000 5173 653 4823 28025;28026 33516;33517 33517 2 FAALDNEEEDKEEEIIK Unmodified 2020.9477 0.94769624 2241 Q8NE71;Q8NE71-2 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 63.156 63.023 3 5.9221E-30 19318 20211116_3428_TMUAki_TMT10x_P_F1 196.66 158.04 37339000 62894000 42199 70174000 50898000 52741000 41360000 32048000 36998000 33893000 43692000 34764000 58714000 2968600 70814000 48543000 54339000 42317000 33684000 38068000 33026000 41941000 4 4 1 4 4 4 4 4 4 4 4 23684000 38918000 42199 44583000 38207000 42566000 30911000 19361000 22575000 21032000 26845000 22051000 36335000 2048200 45051000 36444000 42967000 31478000 20906000 23483000 20472000 25765000 2 2 1 2 2 2 2 2 2 2 2 13655000 23977000 0 25591000 12691000 10174000 10449000 12687000 14423000 12862000 16846000 12713000 22379000 920380 25763000 12099000 11372000 10839000 12778000 14585000 12554000 16176000 2 2 0 2 2 2 2 2 2 2 2 2616400000 1721600000 894830000 5174 2241 4824 28027;28028 33518;33519;33520;33521 33519 4 FAAQNLHQNLIR Unmodified 1423.7684 0.76843093 2771 Q9H0C8 ILKAP Integrin-linked kinase-associated serine/threonine phosphatase 2C yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 41.587 41.407 3 1.6215E-24 12137 20211116_3429_TMUAki_TMT10x_P_F2 248.09 211.71 2770900 4549700 37607 4986400 6512000 6014500 3686700 4929500 5120400 3897400 4626800 2580300 4246900 317170 5071500 6175200 6039400 3931700 5035900 5128900 3849000 4478600 4 4 4 4 4 4 4 4 4 4 4 1914000 3108100 20201 3416400 5526400 5174800 2933500 3409200 3502500 2668900 3159900 1782300 2901400 228110 3489800 5235000 5123600 3128800 3533200 3526200 2637100 3058900 2 2 2 2 2 2 2 2 2 2 2 856880 1441500 17406 1570000 985540 839700 753250 1520300 1617900 1228600 1466900 797970 1345600 89065 1581700 940190 915770 802970 1502600 1602700 1211900 1419800 2 2 2 2 2 2 2 2 2 2 2 390970000 221990000 168980000 5175 2771 4825 28029;28030;28031;28032 33522;33523;33524;33525;33526 33523 5 FAASKDPTVSQTFMLDR Oxidation (M) 1928.9302 0.93021246 3159 Q9UKN8 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 0 0 1 1 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 54.319 54.645 3 0.00015038 15520 20211116_3447_TMUAki_TMT10x_S_F8 79.393 68.113 4568400 8269000 24053 7138200 6324600 9675800 4985100 8526100 7991200 7346200 6746900 4253800 7711600 425760 7400000 6032100 9674700 5219700 8691500 7954000 7223300 6547000 2 2 2 2 2 2 2 2 2 2 2 2729300 4974900 20920 4358300 4257900 7745800 3368100 5331700 4795100 4443500 4062700 2541400 4639800 267180 4540400 4061500 7627700 3507100 5516200 4789700 4376400 3941800 1 1 1 1 1 1 1 1 1 1 1 1839100 3294100 3133.3 2779900 2066700 1930000 1617000 3194400 3196200 2902600 2684200 1712400 3071900 158580 2859600 1970500 2047000 1712600 3175300 3164300 2846900 2605200 1 1 1 1 1 1 1 1 1 1 1 1095800000 661860000 433960000 5176 3159 4826 28033;28034 33527;33528 33528 3169 2 FAAVGFHK Unmodified 875.46537 0.46537261 2226 Q8NBQ5 HSD17B11 Estradiol 17-beta-dehydrogenase 11 yes yes 0 0 0 0 By MS/MS 2 0 1 1 45.353 45.06 3 0.025373 13598 20211116_3429_TMUAki_TMT10x_P_F2 60.972 22.18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5177 2226 4827 28035 33529 33529 1 FACHSASLTVR Unmodified 1247.6081 0.60809046 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 0 By MS/MS By MS/MS 3.36 2.14 3 2 1 1 3 1 5 6 32.504 32.492 2;3 4.8292E-20 7807 20211116_3431_TMUAki_TMT10x_P_F4 236.77 213.45 4585200 7704900 66714 7736200 7844400 7683700 5160300 5122400 4631200 4765400 6172600 4269600 7189600 464760 7889200 7456700 7773300 5358300 5326600 4789300 4668800 5906700 10 10 6 10 10 10 10 10 10 10 10 2789000 4629500 35554 4568000 5888600 6079700 3398600 3193500 3017700 2999900 3729400 2597000 4319600 291860 4687100 5584800 6035500 3565800 3386800 3111900 2937800 3575600 6 6 4 6 6 6 6 6 6 6 6 1796200 3075400 31160 3168200 1955900 1604000 1761600 1928900 1613500 1765500 2443200 1672600 2870000 172900 3202100 1871900 1737800 1792500 1939900 1677400 1731000 2331200 4 4 2 4 4 4 4 4 4 4 4 1235200000 766470000 468740000 5178 1779 4828 28036;28037;28038;28039;28040;28041;28042;28043;28044;28045;28046 33530;33531;33532;33533;33534;33535;33536;33537;33538;33539;33540;33541 33533 12 FACNGTVIEHPEYGEVIQLQGDQR Unmodified 2759.2973 0.29732759 1003 P41567;O60739 EIF1;EIF1B Eukaryotic translation initiation factor 1;Eukaryotic translation initiation factor 1b yes no 0 0 0 0 By matching By MS/MS 5 0 2 1 1 59.461 59.61 3 2.6785E-11 17473 20211116_3444_TMUAki_TMT10x_S_F5 104.31 90.578 1843400 3073800 62005 3533800 2441700 2086000 1954800 2300400 2024400 2350600 2583100 1716800 2869900 219000 3550900 2332800 2219200 2010400 2329500 2076200 2293700 2474500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1843400 3073800 62005 3533800 2441700 2086000 1954800 2300400 2024400 2350600 2583100 1716800 2869900 219000 3550900 2332800 2219200 2010400 2329500 2076200 2293700 2474500 1 1 1 1 1 1 1 1 1 1 1 1043700000 518020000 525640000 5179 1003 4829 28047;28048 33542 33542 1 FACNGTVIEHPEYGEVIQLQGDQRK Unmodified 2887.3923 0.39229061 1003 P41567;O60739 EIF1;EIF1B Eukaryotic translation initiation factor 1;Eukaryotic translation initiation factor 1b yes no 0 0 0 1 By MS/MS 6 0 1 1 54.965 55.054 4 6.7678E-30 15899 20211116_3445_TMUAki_TMT10x_S_F6 173.89 165.18 7073400 14515000 115760 12056000 11241000 8406300 6857700 14393000 12494000 12816000 12381000 6586900 13535000 752690 12418000 10675000 8923400 7359800 14285000 12460000 12582000 11947000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7073400 14515000 115760 12056000 11241000 8406300 6857700 14393000 12494000 12816000 12381000 6586900 13535000 752690 12418000 10675000 8923400 7359800 14285000 12460000 12582000 11947000 2 2 2 2 2 2 2 2 2 2 2 1327900000 0 1327900000 5180 1003 4830 28049 33543;33544 33543 2 FADDTYTESYISTIGVDFK Unmodified 2170.9946 0.99464644 2781;1367 P62820;P62820-3;Q9H0U4 RAB1A;RAB1B Ras-related protein Rab-1A;Ras-related protein Rab-1B no no 0 0 0 0 By MS/MS By MS/MS 4.13 1.26 1 5 3 3 3 9 6 79.309 79.282 3 2.4196E-13 27934 20211116_3430_TMUAki_TMT10x_P_F3 139.67 127.5 26722000 44238000 155500 40714000 29966000 36667000 34827000 21826000 21807000 26533000 32216000 24880000 41265000 2165500 41723000 28849000 37270000 34669000 23081000 23124000 25719000 30755000 8 8 5 8 8 8 8 8 8 8 8 12835000 20606000 67303 18548000 11815000 20712000 15117000 10943000 10688000 12619000 14952000 11950000 19220000 1045300 19100000 11411000 20747000 15024000 11669000 11219000 12255000 14291000 4 4 3 4 4 4 4 4 4 4 4 13888000 23632000 88197 22165000 18151000 15955000 19710000 10883000 11118000 13914000 17264000 12930000 22046000 1120200 22623000 17437000 16523000 19645000 11412000 11905000 13464000 16464000 4 4 2 4 4 4 4 4 4 4 4 6968500000 3790800000 3177800000 5181 1367;2781 4831 28050;28051;28052;28053;28054;28055;28056;28057;28058;28059;28060;28061;28062;28063;28064 33545;33546;33547;33548;33549;33550;33551;33552;33553;33554;33555;33556;33557;33558;33559;33560 33546 16 FADGEVVR Unmodified 891.44503 0.4450311 1732 Q14739 LBR Lamin-B receptor yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 37.64 37.507 2 0.00055698 12065 20211116_3441_TMUAki_TMT10x_S_F3 138.26 68.878 2930800 4795500 4766 5045400 5392700 4839200 3783400 4223000 4709000 3506700 4389600 2728900 4475700 276970 5126400 5130200 4928700 3950400 4303300 4738800 3454300 4244300 3 3 1 3 3 3 3 3 3 3 3 1523600 2553700 4766 2684600 3884300 3660500 2285800 2393100 2693600 1956200 2375600 1418700 2383300 163820 2744100 3684600 3640400 2414800 2484000 2711100 1928500 2301500 1 1 1 1 1 1 1 1 1 1 1 1407200 2241900 0 2360800 1508300 1178700 1497600 1829900 2015400 1550600 2013900 1310200 2092300 113150 2382300 1445700 1288300 1535700 1819300 2027600 1525900 1942800 2 2 0 2 2 2 2 2 2 2 2 142840000 61850000 80994000 5182 1732 4832 28065;28066;28067;28068 33561;33562;33563;33564 33564 4 FADKETLIQFLR Unmodified 1479.8086 0.80856441 1939 Q5T4S7;Q5T4S7-3;Q5T4S7-4;Q5T4S7-2 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 0 1 By MS/MS 2 0 1 1 75.518 75.464 3 0.00055187 24630 20211116_3440_TMUAki_TMT10x_S_F2 80.746 60.907 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5183 1939 4833 28069 33565 33565 1 FADLSEAANR Unmodified 1092.52 0.51998696 561 P08670 VIM Vimentin yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 45.063 45.265 2 0.0032154 12853 20211116_3442_TMUAki_TMT10x_S_F4 80.231 57.994 6328200 10917000 65609 12732000 5982400 5701400 5923900 8852900 9619900 7822900 10118000 5892200 10194000 530490 12755000 5735500 6312700 6126300 8811200 9642600 7682700 9745200 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6328200 10917000 65609 12732000 5982400 5701400 5923900 8852900 9619900 7822900 10118000 5892200 10194000 530490 12755000 5735500 6312700 6126300 8811200 9642600 7682700 9745200 3 3 2 3 3 3 3 3 3 3 3 198000000 0 198000000 5184 561 4834 28070;28071 33566;33567;33568;33569 33567 4 FADLSEAANRNNDALR Unmodified 1775.8551 0.85507368 561 P08670 VIM Vimentin yes yes 0 0 0 1 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 45.514 45.669 3 1.0372E-46 11793 20211116_3444_TMUAki_TMT10x_S_F5 239.86 198.66 14488000 25066000 85338 29894000 25249000 24588000 16545000 21699000 24601000 18361000 23263000 13490000 23407000 1385700 30076000 23993000 25311000 17487000 22108000 24627000 18070000 22482000 8 8 6 8 8 8 8 8 8 8 8 7677500 13246000 31068 15811000 19147000 19615000 11690000 10539000 12696000 9845900 12072000 7148500 12370000 786890 16005000 18171000 19544000 12279000 11153000 12850000 9644600 11665000 4 4 3 4 4 4 4 4 4 4 4 6810700 11820000 54269 14083000 6102100 4972600 4855300 11160000 11905000 8514900 11191000 6341800 11037000 598770 14071000 5822500 5766800 5208400 10955000 11777000 8425000 10818000 4 4 3 4 4 4 4 4 4 4 4 1585000000 902710000 682310000 5185 561 4835 28072;28073;28074;28075;28076 33570;33571;33572;33573;33574;33575;33576;33577 33577 8 FADQDDIGNVSFDR Unmodified 1597.7009 0.70086445 1917 Q5H9R7;Q5H9R7-4;Q5H9R7-6;Q5H9R7-2;Q5H9R7-5;Q5H9R7-3 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 yes no 0 0 0 0 By MS/MS By MS/MS 2.75 0.829 2 1 1 3 1 58.931 58.678 2;3 1.6078E-84 19630 20211116_3430_TMUAki_TMT10x_P_F3 336.73 309.41 7429100 12195000 47547 13482000 11976000 15868000 10078000 8059700 7932300 8217700 9857100 6917500 11384000 715270 13698000 11438000 15843000 10255000 8593300 8231900 8019300 9449200 4 4 2 4 4 4 4 4 4 4 4 7429100 12195000 47547 13482000 11976000 15868000 10078000 8059700 7932300 8217700 9857100 6917500 11384000 715270 13698000 11438000 15843000 10255000 8593300 8231900 8019300 9449200 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 648620000 648620000 0 5186 1917 4836 28077;28078;28079;28080 33578;33579;33580;33581;33582 33580 5 FADQHVPGSPFSVK Unmodified 1514.7518 0.75177781 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS 7 0 1 1 51.975 52.667 3 0.085159 16377 20211116_3435_TMUAki_TMT10x_P_F7 35.329 15.49 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5187 755 4837 28081 33583 33583 1 FADQKNPPNQSSNERPPSLLVIETK Unmodified 2808.4406 0.44062101 156 O15042;O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 0 0 0 2 By MS/MS 7 0 1 1 53.425 54.133 4 2.1368E-29 16959 20211116_3435_TMUAki_TMT10x_P_F7 170.16 151.45 1517000 2888400 18130 1810100 3337300 6380700 2922200 4708200 4153000 3833000 3145100 1412600 2691200 168160 1991100 3190600 6180700 3023900 4845100 4135400 3779600 3065200 1 1 1 1 1 1 1 1 1 1 1 1517000 2888400 18130 1810100 3337300 6380700 2922200 4708200 4153000 3833000 3145100 1412600 2691200 168160 1991100 3190600 6180700 3023900 4845100 4135400 3779600 3065200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 403640000 403640000 0 5188 156 4838 28082 33584 33584 1 FAEAFEAIPR Unmodified 1149.5819 0.58185893 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 By MS/MS By MS/MS 4.4 1.23 2 2 11 6 2 2 19 6 66.963 66.974 2;3 1.6876E-05 20850 20211116_3431_TMUAki_TMT10x_P_F4 101.97 81.104 241580000 406810000 5519800 399090000 323810000 444580000 294240000 341890000 322200000 328690000 347020000 224970000 379570000 25946000 408370000 310050000 447800000 300870000 352400000 327440000 321560000 333990000 28 28 22 28 28 28 28 28 28 28 28 133930000 220300000 3192600 219180000 188440000 319170000 177430000 193020000 179660000 181820000 190790000 124730000 205560000 14465000 225180000 180570000 316140000 180620000 202280000 183070000 178040000 183710000 19 19 13 19 19 19 19 19 19 19 19 107640000 186510000 2327200 179910000 135380000 125420000 116810000 148870000 142530000 146870000 156230000 100240000 174010000 11482000 183190000 129480000 131660000 120260000 150120000 144360000 143530000 150280000 9 9 9 9 9 9 9 9 9 9 9 25407000000 13438000000 11969000000 5189 1146 4839 28083;28084;28085;28086;28087;28088;28089;28090;28091;28092;28093;28094;28095;28096;28097;28098;28099;28100;28101;28102;28103;28104;28105;28106;28107 33585;33586;33587;33588;33589;33590;33591;33592;33593;33594;33595;33596;33597;33598;33599;33600;33601;33602;33603;33604;33605;33606;33607;33608;33609;33610;33611;33612;33613;33614;33615;33616 33594 32 FAEFQYLQPGPPR Unmodified 1548.7725 0.77251325 2181 Q8N163;Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 2.57 1 1 4 3 3 67.339 67.305 2;3 1.6074E-29 20615 20211116_3447_TMUAki_TMT10x_S_F8 242.49 214.48 25175000 41108000 50424 40121000 29445000 35227000 29016000 23931000 21402000 23857000 30223000 23439000 38355000 2028200 40926000 28215000 35935000 29219000 24899000 22419000 23303000 28882000 8 8 2 8 8 8 8 8 8 8 8 12956000 20748000 35110 20325000 15418000 22863000 15904000 11540000 10606000 11372000 14908000 12063000 19359000 1056700 20803000 14792000 22880000 15943000 12300000 11174000 11113000 14248000 4 4 1 4 4 4 4 4 4 4 4 12219000 20360000 15314 19795000 14027000 12364000 13112000 12391000 10796000 12486000 15316000 11376000 18996000 971530 20123000 13423000 13055000 13276000 12599000 11245000 12190000 14635000 4 4 1 4 4 4 4 4 4 4 4 3353500000 1895000000 1458400000 5190 2181 4840 28108;28109;28110;28111;28112;28113 33617;33618;33619;33620;33621;33622;33623;33624;33625 33623 9 FAEHGETLAMK Oxidation (M) 1248.5809 0.58087266 2714 Q9BXJ9;Q9BXJ9-4;Q6N069;Q6N069-5;Q6N069-4;Q6N069-3;Q6N069-2 NAA15;NAA16 N-alpha-acetyltransferase 15, NatA auxiliary subunit;N-alpha-acetyltransferase 16, NatA auxiliary subunit yes no 0 0 1 0 By MS/MS 4 1 1 1 2 35.846 35.81 3 0.034322 7783 20211116_3444_TMUAki_TMT10x_S_F5 53.528 30.995 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5191 2714 4841 28114;28115 33626;33627 33627 2913 2 FAELETILGDIDR Unmodified 1490.7617 0.76167379 2740 Q9BZJ0;Q9BZJ0-2;Q9BZJ0-3 CRNKL1 Crooked neck-like protein 1 yes no 0 0 0 0 By MS/MS 1 0 1 1 81.178 81.149 2 3.1679E-14 28701 20211116_3439_TMUAki_TMT10x_S_F1 161.99 122.68 2668700 4576100 26046 4168300 3278400 3201700 3543500 2669300 2467000 2561800 3100100 2485000 4268500 254070 4266700 3151700 3309300 3547100 2737600 2579300 2506400 2970900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2668700 4576100 26046 4168300 3278400 3201700 3543500 2669300 2467000 2561800 3100100 2485000 4268500 254070 4266700 3151700 3309300 3547100 2737600 2579300 2506400 2970900 1 1 1 1 1 1 1 1 1 1 1 667560000 0 667560000 5192 2740 4842 28116 33628 33628 1 FAEPIGGFQCVFPGC Unmodified 1684.7378 0.737784 3313 Q9Y570;Q9Y570-4;Q9Y570-2 PPME1 Protein phosphatase methylesterase 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.82 0.936 1 3 4 3 5 6 81.009 81.018 2;3 5.0111E-19 28231 20211116_3435_TMUAki_TMT10x_P_F7 166.19 151.77 20060000 32598000 343770 32773000 24215000 29274000 24488000 18083000 15671000 18279000 25580000 18679000 30419000 1754500 33369000 23234000 29787000 24552000 18956000 16680000 17845000 24369000 11 11 7 11 11 11 11 11 11 11 11 10399000 16521000 227010 15526000 10077000 18156000 11617000 9855600 8242700 9375400 12535000 9684100 15412000 1021800 15949000 9711900 18148000 11599000 10425000 8685500 9176300 11959000 5 5 4 5 5 5 5 5 5 5 5 9660900 16078000 116760 17247000 14137000 11117000 12871000 8227500 7428300 8904000 13045000 8995000 15007000 732770 17420000 13522000 11639000 12953000 8531300 7994500 8668300 12410000 6 6 3 6 6 6 6 6 6 6 6 12792000000 5070000000 7722200000 5193 3313 4843 28117;28118;28119;28120;28121;28122;28123;28124;28125;28126;28127 33629;33630;33631;33632;33633;33634;33635;33636;33637;33638;33639;33640 33631 12 FAETQPK Unmodified 819.41267 0.41266834 821 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 34.999 35.053 2 0.0020851 8480 20211116_3431_TMUAki_TMT10x_P_F4 130 99.581 2456200 4147600 27845 3700400 3683200 4011800 2965400 2084400 2332200 2038700 3126500 2287200 3868500 246770 3811200 3515300 4024400 3025900 2215100 2428600 1993000 2991500 3 3 3 3 3 3 3 3 3 3 3 2001400 3322900 23615 2951500 3203100 3620800 2453500 1682700 1907600 1677900 2513500 1863700 3099300 204770 3047300 3053900 3603800 2510900 1808500 1986100 1638900 2406000 2 2 2 2 2 2 2 2 2 2 2 454790 824700 4230.3 748820 480110 390920 511970 401700 424620 360780 613000 423480 769250 42002 763930 461410 420560 514940 406650 442490 354040 585500 1 1 1 1 1 1 1 1 1 1 1 68601000 59639000 8961600 5194 821 4844 28128;28129;28130 33641;33642;33643 33641 3 FAFPLSLFQGSSDGVEVR Unmodified 1954.9789 0.97887721 1599 Q13144 EIF2B5 Translation initiation factor eIF-2B subunit epsilon yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 80.833 80.822 3 4.9498E-05 26806 20211116_3440_TMUAki_TMT10x_S_F2 79.326 64.639 4006500 6628600 71246 6511300 4430700 6037900 5037500 3807900 4077700 4180600 4810500 3730800 6184800 323560 6643800 4266200 6130100 5048300 3995300 4216300 4067600 4617900 3 3 1 3 3 3 3 3 3 3 3 2418400 3794500 0 3631500 1978800 4040600 2332000 1996800 2153800 2332800 2774600 2251600 3540000 113400 3722400 1904500 4045100 2341400 2143400 2221000 2264500 2657400 2 2 0 2 2 2 2 2 2 2 2 1588100 2834100 71246 2879700 2451900 1997300 2705500 1811100 1923900 1847700 2035900 1479200 2644700 210160 2921400 2361700 2085000 2706800 1851900 1995400 1803100 1960500 1 1 1 1 1 1 1 1 1 1 1 623350000 432580000 190780000 5195 1599 4845 28131;28132 33644;33645;33646 33646 3 FAFQAEVNR Unmodified 1080.5352 0.53524309 672 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 By MS/MS By MS/MS 5.88 1.05 1 2 2 3 5 3 48.785 48.938 2 0.00058841 13118 20211116_3444_TMUAki_TMT10x_S_F5 117.76 100.98 30806000 49625000 17212 55357000 43347000 36774000 31197000 28723000 30727000 27530000 38446000 28679000 46327000 2097600 55790000 41217000 38429000 32265000 29575000 31554000 26936000 36848000 5 5 1 5 5 5 5 5 5 5 5 10473000 16817000 17212 18236000 22907000 19988000 11703000 9396700 10485000 9345600 12715000 9750100 15698000 924290 18530000 21675000 20017000 12419000 10087000 10799000 9129500 12197000 2 2 1 2 2 2 2 2 2 2 2 20334000 32808000 0 37120000 20440000 16786000 19494000 19327000 20242000 18184000 25731000 18928000 30629000 1173300 37260000 19542000 18412000 19847000 19488000 20755000 17807000 24651000 3 3 0 3 3 3 3 3 3 3 3 2857400000 1548100000 1309300000 5196 672 4846 28133;28134;28135;28136;28137;28138;28139;28140 33647;33648;33649;33650;33651;33652;33653;33654 33651 8 FAFVEFADQNSVPR Unmodified 1625.7838 0.78380622 2319 Q8WXA9;Q8WXA9-2 SREK1 Splicing regulatory glutamine/lysine-rich protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 6 0.775 3 4 3 5 5 73.998 74.032 2;3 1.8573E-43 25752 20211116_3446_TMUAki_TMT10x_S_F7 257.13 226.74 9469700 16851000 228520 15880000 10910000 16085000 12395000 10818000 11030000 11630000 12755000 8818400 15720000 956370 16272000 10509000 16255000 12453000 11289000 11343000 11325000 12251000 5 5 3 5 5 5 5 5 5 5 5 4964300 9026300 88326 8164900 5225900 10677000 6661800 6280200 5985100 6475900 7027300 4622400 8419300 435680 8428000 5048300 10623000 6661300 6613000 6155400 6316700 6746700 3 3 1 3 3 3 3 3 3 3 3 4505400 7825000 140190 7715300 5684600 5407500 5733500 4537500 5045400 5154400 5728000 4196000 7301100 520690 7844100 5460300 5631600 5791900 4675700 5187200 5008600 5504500 2 2 2 2 2 2 2 2 2 2 2 2369200000 1174300000 1194900000 5197 2319 4847 28141;28142;28143;28144;28145;28146;28147;28148;28149;28150 33655;33656;33657;33658;33659;33660;33661;33662;33663 33663 9 FAGGDYTTTIEAFISASGR Unmodified 1962.9323 0.93232095 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 2.5 1 2 3 2 4 80.131 80.14 2;3 1.7484E-79 26469 20211116_3436_TMUAki_TMT10x_P_F8 301.57 284.55 9695600 16224000 0 14321000 11541000 16402000 12314000 9861700 10004000 10598000 12147000 9026300 15132000 302500 14775000 11075000 16434000 12379000 10379000 10355000 10320000 11651000 4 4 0 4 4 4 4 4 4 4 4 5195900 8577400 0 7092500 5651300 11675000 6037500 5806100 5891000 6086400 6833300 4837200 7998100 141480 7408900 5422300 11479000 6099400 6207800 6032900 5932800 6562600 2 2 0 2 2 2 2 2 2 2 2 4499600 7647000 0 7228500 5889200 4726400 6276500 4055600 4113100 4511400 5313800 4189100 7133900 161030 7366400 5652900 4954200 6279300 4171000 4321600 4387300 5088900 2 2 0 2 2 2 2 2 2 2 2 3217300000 1904800000 1312500000 5198 542 4848 28151;28152;28153;28154;28155;28156 33664;33665;33666;33667;33668;33669 33665 6 FAGHNFR Unmodified 847.40892 0.40892037 568 P09104;P09104-2 ENO2 Gamma-enolase yes no 0 0 0 0 By MS/MS By MS/MS 1.2 0.4 4 1 3 2 30.18 30.213 2;3 0.00085121 8006 20211116_3439_TMUAki_TMT10x_S_F1 127.66 118.44 3104400 4529000 21309 4097700 3111400 3941700 3159700 2440000 2445700 2485200 3544400 2890600 4224500 269600 4208400 2985400 3991400 3180400 2557900 2558300 2425300 3385100 4 4 2 4 4 4 4 4 4 4 4 1462700 2097800 4144.8 1880100 1565900 2094300 1324500 1104700 1138900 1127600 1652700 1361900 1956600 124440 1936600 1495500 2098100 1350400 1173800 1185000 1100300 1578400 2 2 1 2 2 2 2 2 2 2 2 1641700 2431300 17164 2217600 1545500 1847400 1835200 1335300 1306800 1357600 1891700 1528700 2267800 145160 2271800 1489900 1893300 1830000 1384100 1373300 1325000 1806800 2 2 1 2 2 2 2 2 2 2 2 204620000 79671000 124940000 5199 568 4849 28157;28158;28159;28160;28161 33670;33671;33672;33673;33674 33673 5 FAGHNFRNPSVL Unmodified 1357.6891 0.68911797 568 P09104;P09104-2 ENO2 Gamma-enolase yes no 0 0 0 1 By MS/MS By MS/MS 3.5 2.69 2 2 2 2 4 4 42.728 42.67 3 1.0636E-07 12739 20211116_3429_TMUAki_TMT10x_P_F2 135.99 123.36 23827000 40384000 501480 40649000 31102000 34986000 25741000 27051000 28447000 22939000 30731000 22188000 37684000 2407900 41366000 29709000 35812000 26475000 27781000 28903000 22572000 29574000 12 12 8 12 12 12 12 12 12 12 12 13818000 23260000 358370 23196000 21023000 26206000 15888000 14377000 15683000 11878000 17126000 12868000 21704000 1475900 23713000 20044000 26246000 16378000 15140000 16015000 11703000 16476000 5 5 2 5 5 5 5 5 5 5 5 10009000 17124000 143110 17453000 10079000 8779300 9853000 12673000 12765000 11061000 13605000 9320400 15980000 932000 17652000 9665400 9566400 10096000 12641000 12888000 10869000 13099000 7 7 6 7 7 7 7 7 7 7 7 2154100000 1280700000 873360000 5200 568 4850 28162;28163;28164;28165;28166;28167;28168;28169 33675;33676;33677;33678;33679;33680;33681;33682;33683;33684;33685;33686 33677 12 FAGLHFFNPVPVMK Oxidation (M) 1618.833 0.83300502 1866 Q16836;Q16836-3;Q16836-2 HADH Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 69.888 69.878 3 9.1573E-05 21664 20211116_3444_TMUAki_TMT10x_S_F5 89.301 75.143 32529000 55189000 319260 43200000 36831000 54375000 42253000 31702000 29443000 32827000 38567000 30289000 51452000 3008700 45085000 35468000 54195000 42179000 33410000 30837000 32014000 36921000 7 7 3 7 7 7 7 7 7 7 7 21314000 34894000 277310 26769000 22704000 40696000 28354000 19033000 17590000 20727000 24146000 19848000 32529000 2037500 28091000 21928000 40113000 28132000 20496000 18598000 20173000 23089000 4 4 2 4 4 4 4 4 4 4 4 11214000 20295000 41946 16431000 14127000 13679000 13899000 12668000 11853000 12100000 14421000 10441000 18923000 971220 16994000 13540000 14082000 14047000 12914000 12239000 11841000 13832000 3 3 1 3 3 3 3 3 3 3 3 4802800000 2335600000 2467200000 5201 1866 4851 28170;28171;28172;28173;28174 33687;33688;33689;33690;33691;33692;33693;33694 33692 2480 8 FAGLHFFNPVPVMK Unmodified 1602.8381 0.8380904 1866 Q16836;Q16836-3;Q16836-2 HADH Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 6 0.707 1 2 1 2 2 76.267 76.279 3 0.00011516 24632 20211116_3445_TMUAki_TMT10x_S_F6 86.028 71.337 18006000 28748000 87393 27021000 18620000 23024000 21217000 12425000 10171000 12989000 18636000 16765000 26818000 1504800 27628000 17919000 23464000 21043000 13184000 11131000 12662000 17715000 4 4 2 4 4 4 4 4 4 4 4 10807000 17314000 39605 16159000 10232000 17129000 12682000 8896400 7451400 9396100 11730000 10062000 16151000 846720 16581000 9869400 17205000 12574000 9475700 7961200 9156100 11183000 3 3 1 3 3 3 3 3 3 3 3 7199400 11434000 47789 10862000 8388100 5895300 8534800 3528400 2719200 3592600 6906000 6703700 10667000 658060 11047000 8049500 6258900 8469500 3708800 3169400 3506100 6532300 1 1 1 1 1 1 1 1 1 1 1 1795300000 791290000 1004000000 5202 1866 4851 28175;28176;28177;28178 33695;33696;33697;33698 33698 4 FAGQMGIQLFETSAK Oxidation (M) 1642.8025 0.80249275 1784 Q15286 RAB35 Ras-related protein Rab-35 yes yes 0 0 1 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 67.822 68.053 3 1.237E-14 20949 20211116_3447_TMUAki_TMT10x_S_F8 135.81 109.67 16230000 28094000 128630 24053000 19335000 29384000 20442000 20720000 21200000 21185000 22800000 15113000 26199000 1488200 24903000 18574000 29411000 20701000 21517000 21591000 20672000 21945000 4 4 3 4 4 4 4 4 4 4 4 9373000 15465000 66242 13390000 9324600 20312000 11149000 11242000 11814000 11661000 12993000 8727700 14423000 838140 13910000 8990700 20062000 11234000 11900000 12031000 11371000 12497000 2 2 2 2 2 2 2 2 2 2 2 6857000 12628000 62391 10663000 10011000 9071900 9293600 9478000 9385900 9524700 9807000 6384900 11776000 650090 10993000 9583000 9349100 9467200 9617500 9559400 9300400 9447400 2 2 1 2 2 2 2 2 2 2 2 1702600000 1108200000 594390000 5203 1784 4852 28179;28180;28181;28182 33699;33700;33701;33702;33703;33704 33704 2397 6 FAGVDIR Unmodified 776.41809 0.41808807 1340 P62249 RPS16 40S ribosomal protein S16 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 1.12 2 2 2 2 4 4 45.873 45.937 2 0.027421 12733 20211116_3431_TMUAki_TMT10x_P_F4 81.381 29.809 45655000 72890000 91479 75971000 75920000 68325000 48432000 54272000 51382000 49150000 60699000 42505000 68025000 3697600 77171000 72072000 69761000 50655000 55736000 52474000 48213000 58266000 9 9 2 9 9 9 9 9 9 9 9 25605000 38301000 65472 39911000 53351000 51453000 29293000 30133000 29815000 27660000 33450000 23839000 35745000 2292100 40775000 50536000 51226000 30987000 31639000 30438000 27116000 32156000 5 5 1 5 5 5 5 5 5 5 5 20050000 34589000 26006 36060000 22570000 16872000 19139000 24139000 21567000 21490000 27249000 18666000 32281000 1405500 36396000 21536000 18535000 19668000 24097000 22036000 21097000 26110000 4 4 1 4 4 4 4 4 4 4 4 4453300000 2386100000 2067200000 5204 1340 4853 28183;28184;28185;28186;28187;28188;28189;28190 33705;33706;33707;33708;33709;33710;33711;33712;33713 33706 9 FAGVVPPVAGPWLGVEWDNPER Unmodified 2391.2012 0.20116601 1831 Q15813;Q15813-2 TBCE Tubulin-specific chaperone E yes no 0 0 0 0 By MS/MS 8 0 1 1 80.774 80.779 3 7.8785E-08 26735 20211116_3436_TMUAki_TMT10x_P_F8 96.79 78.873 848170 1347300 13947 1346000 832170 1521300 1159000 860980 859960 1011400 1038200 789830 1257200 83093 1375800 806980 1524100 1149300 913210 894270 981620 995970 1 1 1 1 1 1 1 1 1 1 1 848170 1347300 13947 1346000 832170 1521300 1159000 860980 859960 1011400 1038200 789830 1257200 83093 1375800 806980 1524100 1149300 913210 894270 981620 995970 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 375860000 375860000 0 5205 1831 4854 28191 33714 33714 1 FAGYVTSIAATELEDDDDDYSSSTSLLGQK Unmodified 3197.4412 0.44119368 345 O75533;O75533-2 SF3B1 Splicing factor 3B subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 80.088 80.063 3;4 1.5258E-30 28263 20211116_3430_TMUAki_TMT10x_P_F3 150.59 140.74 5169200 8685900 54145 7971300 5512300 7992900 5907500 4837000 4923600 5419500 6383900 4813200 8102200 452870 8182900 5296600 8070400 5941100 5094600 5103800 5269000 6113100 5 5 2 5 5 5 5 5 5 5 5 3688900 6070600 42443 5457700 3219600 6161500 3755700 3339000 3313700 3613100 4429800 3434800 5662200 309400 5621600 3101300 6170100 3767900 3545500 3430000 3517400 4238700 3 3 1 3 3 3 3 3 3 3 3 1480300 2615300 11702 2513600 2292600 1831400 2151800 1498000 1609900 1806400 1954100 1378400 2440000 143470 2561300 2195400 1900300 2173300 1549100 1673700 1751600 1874400 2 2 1 2 2 2 2 2 2 2 2 3488600000 1478700000 2009900000 5206 345 4855 28192;28193;28194;28195;28196;28197 33715;33716;33717;33718;33719;33720 33718 6 FAHNVVTTR Unmodified 1043.5512 0.55122751 50 CON__Q0V8M9 yes yes 0 0 0 0 By MS/MS 1 0 1 1 30.114 30.18 3 0.0064256 8031 20211116_3439_TMUAki_TMT10x_S_F1 62.582 38.36 + 268600 452320 0 401950 321560 233060 325460 224010 239410 236000 381130 250070 421880 20032 411080 308230 247640 327260 228570 252360 230000 363280 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 268600 452320 0 401950 321560 233060 325460 224010 239410 236000 381130 250070 421880 20032 411080 308230 247640 327260 228570 252360 230000 363280 1 1 0 1 1 1 1 1 1 1 1 9954700 0 9954700 5207 50 4856 28198 33721 33721 1 FAHTNVESLVNEYDDNGEGIILFRPSHLTNK Unmodified 3528.7274 0.72736056 868 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 1 By MS/MS 7 0 1 1 71.019 71.415 5 3.3996E-27 24180 20211116_3435_TMUAki_TMT10x_P_F7 153.06 142.35 2865400 4338600 23512 3959800 2308400 5236800 2604800 2190500 2289300 2391400 2968900 2668200 4047000 251670 4085500 2222200 5187700 2616900 2386900 2366900 2327200 2843000 1 1 1 1 1 1 1 1 1 1 1 2865400 4338600 23512 3959800 2308400 5236800 2604800 2190500 2289300 2391400 2968900 2668200 4047000 251670 4085500 2222200 5187700 2616900 2386900 2366900 2327200 2843000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 905570000 905570000 0 5208 868 4857 28199 33722 33722 1 FAHTVITSR Unmodified 1030.556 0.55597854 54 CON__Q3T052 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 32.487 32.503 3 0.00064457 6981 20211116_3428_TMUAki_TMT10x_P_F1 94.309 57.724 + 938990 1363200 10155 1494300 1663900 1585000 1132800 1204400 1228800 1116300 1252600 874360 1272500 95801 1516600 1582600 1600600 1179800 1241100 1246800 1093900 1207600 3 3 2 3 3 3 3 3 3 3 3 622180 877910 10155 998950 1277000 1300700 817700 810560 820270 741370 812230 579380 819630 70218 1015100 1213500 1295500 853520 846790 834090 726910 783770 2 2 2 2 2 2 2 2 2 2 2 316820 485290 0 495390 386970 284280 315130 393860 408580 374950 440340 294970 452860 25584 501510 369130 305090 326300 394360 412690 366980 423800 1 1 0 1 1 1 1 1 1 1 1 26699000 16686000 10013000 5209 54 4858 28200;28201 33723;33724;33725 33723 3 FAIGSQVSEHSIIK Unmodified 1514.8093 0.80929269 912 P33992 MCM5 DNA replication licensing factor MCM5 yes yes 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 53.061 52.98 3 9.0692E-20 17027 20211116_3446_TMUAki_TMT10x_S_F7 150.12 127.89 2513700 4259200 31057 4379400 3232400 2561900 2397000 3907200 3447700 3351200 3746000 2340700 3974800 247410 4432000 3080200 2752200 2507600 3888000 3472000 3295900 3604400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2513700 4259200 31057 4379400 3232400 2561900 2397000 3907200 3447700 3351200 3746000 2340700 3974800 247410 4432000 3080200 2752200 2507600 3888000 3472000 3295900 3604400 1 1 1 1 1 1 1 1 1 1 1 187310000 0 187310000 5210 912 4859 28202;28203 33726;33727 33726 2 FAIQDISVEETSAK Unmodified 1536.7672 0.7671531 235;644 O43707;P35609;Q08043;P35609-2;P12814;P12814-2;P12814-3;P12814-4 ACTN4;ACTN2;ACTN3;ACTN1 Alpha-actinin-4;Alpha-actinin-2;Alpha-actinin-3;Alpha-actinin-1 no no 0 0 0 0 By MS/MS By MS/MS 4 0.632 1 3 1 3 2 64.695 64.666 2;3 2.5606E-35 20413 20211116_3431_TMUAki_TMT10x_P_F4 224.24 184.93 7806600 12752000 156080 14154000 10570000 13224000 9294100 7755200 7464200 7532900 10755000 7269900 11904000 831390 14326000 10113000 13407000 9437500 8154300 7790400 7366200 10273000 2 2 2 2 2 2 2 2 2 2 2 4712800 7866100 70569 9451000 7891800 10529000 6811900 4619600 4551300 4801400 6789800 4388600 7345800 501010 9545800 7544100 10527000 6896100 5000600 4808500 4681800 6480600 1 1 1 1 1 1 1 1 1 1 1 3093800 4885500 85513 4702800 2678600 2695600 2482200 3135600 2912900 2731500 3964800 2881200 4558000 330380 4780600 2568700 2879800 2541400 3153700 2981900 2684400 3792200 1 1 1 1 1 1 1 1 1 1 1 1244600000 752080000 492570000 5211 235;644 4860 28204;28205;28206;28207;28208 33728;33729;33730;33731;33732 33730 5 FAIQTDPNSNDGLVTVVKPIDFETNR Unmodified 2889.4509 0.45085135 727 P19022;P19022-2 CDH2 Cadherin-2 yes no 0 0 0 1 By MS/MS By MS/MS 6.75 0.433 1 3 2 2 76.932 76.993 3;4 5.5631E-18 27008 20211116_3446_TMUAki_TMT10x_S_F7 138.08 130.88 21615000 38612000 651440 36136000 28149000 42971000 31108000 31617000 25788000 27534000 28831000 20131000 36020000 2486000 37142000 27104000 43099000 31234000 32597000 26576000 27059000 27718000 5 5 4 5 5 5 5 5 5 5 5 11350000 20394000 155340 19140000 12485000 28576000 17172000 19876000 15360000 16920000 15092000 10569000 19025000 1097000 19756000 12098000 28334000 17117000 20559000 15696000 16647000 14567000 2 2 1 2 2 2 2 2 2 2 2 10265000 18218000 496110 16996000 15664000 14395000 13935000 11741000 10428000 10614000 13739000 9561500 16995000 1389000 17386000 15006000 14766000 14117000 12038000 10880000 10412000 13151000 3 3 3 3 3 3 3 3 3 3 3 3015500000 1562500000 1453100000 5212 727 4861 28209;28210;28211;28212 33733;33734;33735 33734 3 FAKPVYPGQTLQTEMWK Oxidation (M) 2039.0186 0.018633537 1161 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 1 1 By MS/MS By MS/MS 2 0 2 1 1 60.926 60.673 3 0.0043732 19960 20211116_3429_TMUAki_TMT10x_P_F2 62.165 43.107 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5213 1161 4862 28213;28214 33736;33737 33736 1544 2 FAKPVYPGQTLQTEMWK Unmodified 2023.0237 0.023718915 1161 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 1 By MS/MS 3 0 1 1 67.045 66.582 3 3.4633E-15 23939 20211116_3441_TMUAki_TMT10x_S_F3 141.55 126.67 4686500 7523100 13866 7943400 5844100 3343300 5307100 2092400 1472800 2362000 4553700 4363700 7021400 417680 8005100 5591000 3661600 5292600 2198600 1775400 2295700 4297400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4686500 7523100 13866 7943400 5844100 3343300 5307100 2092400 1472800 2362000 4553700 4363700 7021400 417680 8005100 5591000 3661600 5292600 2198600 1775400 2295700 4297400 1 1 1 1 1 1 1 1 1 1 1 400700000 0 400700000 5214 1161 4862 28215 33738 33738 1 FALACNASDKIIEPIQSR Unmodified 2032.0412 0.041159893 929 P35250;P35250-2 RFC2 Replication factor C subunit 2 yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 61.646 61.742 3 2.32E-23 18879 20211116_3436_TMUAki_TMT10x_P_F8 161.22 139.97 11376000 21768000 66884 13226000 19516000 30056000 17355000 29278000 24264000 25082000 21452000 10591000 20280000 974560 14348000 18653000 29563000 17931000 29681000 24282000 24669000 20781000 4 4 2 4 4 4 4 4 4 4 4 5758200 10326000 51622 6680800 9933300 20898000 11146000 14513000 12122000 12256000 10473000 5361300 9621600 525570 7285600 9554400 20269000 11273000 15011000 12231000 12062000 10154000 2 2 1 2 2 2 2 2 2 2 2 5617400 11442000 15262 6545400 9582500 9157700 6208700 14765000 12142000 12826000 10979000 5229800 10659000 448990 7062300 9098600 9294100 6657800 14671000 12051000 12607000 10627000 2 2 1 2 2 2 2 2 2 2 2 1685300000 870870000 814440000 5215 929 4863 28216;28217 33739;33740;33741;33742 33739 4 FALEVAAK Unmodified 847.48035 0.48035398 1246 P55786;P55786-2;A6NEC2;A6NEC2-2 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 56.486 56.562 2 0.0014326 16518 20211116_3445_TMUAki_TMT10x_S_F6 121.99 61.201 11233000 17490000 100290 19198000 15469000 15927000 12826000 12857000 12306000 12661000 14806000 10459000 16326000 1084100 19415000 14772000 16359000 13132000 13222000 12631000 12374000 14205000 2 2 2 2 2 2 2 2 2 2 2 5048800 7592600 65056 8285400 8224000 9663200 5651500 5488500 5037400 5288300 5984200 4701400 7087300 523680 8424100 7824800 9665400 5848000 5785100 5185100 5173100 5743400 1 1 1 1 1 1 1 1 1 1 1 6183800 9897300 35236 10912000 7244700 6264200 7174500 7368900 7268700 7373100 8821300 5758000 9239100 560380 10991000 6946900 6693100 7284000 7436500 7445600 7200800 8461500 1 1 1 1 1 1 1 1 1 1 1 573150000 276870000 296280000 5216 1246 4864 28218;28219 33743;33744 33744 2 FALGSVVAVTK Unmodified 1090.6386 0.63864553 1486 Q01780;Q01780-2 EXOSC10 Exosome component 10 yes no 0 0 0 0 By MS/MS 3 0 1 1 67.395 67.105 2 2.6532E-14 23079 20211116_3430_TMUAki_TMT10x_P_F3 185.29 127.74 3749800 5694200 0 5784100 4590200 7299200 4627600 4327100 4234400 4037500 4667300 3491100 5313700 283820 5917100 4399700 7275700 4679800 4540800 4340400 3955100 4489000 1 1 0 1 1 1 1 1 1 1 1 3749800 5694200 0 5784100 4590200 7299200 4627600 4327100 4234400 4037500 4667300 3491100 5313700 283820 5917100 4399700 7275700 4679800 4540800 4340400 3955100 4489000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 465950000 465950000 0 5217 1486 4865 28220 33745 33745 1 FALKVDSPDVKR Unmodified 1373.7667 0.76669959 2083 Q7Z4V5;Q7Z4V5-2;Q7Z4V5-4;Q7Z4V5-3 HDGFRP2 Hepatoma-derived growth factor-related protein 2 yes no 0 0 0 2 By MS/MS 1 0 1 1 44.813 44.602 4 0.0015932 13869 20211116_3439_TMUAki_TMT10x_S_F1 78.529 66.736 403760 707880 14519 652540 669090 531400 453970 955600 850390 757640 797840 376050 660320 50722 667800 637030 558360 484000 944260 845920 748100 771270 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 403760 707880 14519 652540 669090 531400 453970 955600 850390 757640 797840 376050 660320 50722 667800 637030 558360 484000 944260 845920 748100 771270 1 1 1 1 1 1 1 1 1 1 1 71971000 0 71971000 5218 2083 4866 28221 33746 33746 1 FAMEPEEFDSDTLREFVTAFKK Oxidation (M) 2652.2418 0.24176977 654 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 1 2 By MS/MS By matching 5.25 0.829 1 1 2 3 1 78.755 78.752 4 0.0085513 25240 20211116_3434_TMUAki_TMT10x_P_F6 45.395 28.774 3896000 6302900 34371 5425500 3363900 7625600 4321700 5385100 5061100 5162200 5376200 3627800 5878000 347590 5629700 3251600 7582400 4356500 5581600 5127700 5050900 5176500 1 1 1 1 1 1 1 1 1 1 1 3896000 6302900 34371 5425500 3363900 7625600 4321700 5385100 5061100 5162200 5376200 3627800 5878000 347590 5629700 3251600 7582400 4356500 5581600 5127700 5050900 5176500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3119900000 1992200000 1127700000 5219 654 4867 28222;28223;28224;28225 33747 33747 715 1 FANSLVGVQQQLQAFNTYR Unmodified 2183.1124 0.112351 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By matching 4.5 0.5 1 1 1 1 78.276 78.288 3 2.4497E-12 26018 20211116_3431_TMUAki_TMT10x_P_F4 127.37 113.12 1809000 2746100 51361 2331500 1911000 4174500 2400700 2425100 2022800 2293100 2305500 1684700 2560900 199270 2435400 1847800 4099700 2397900 2550100 2084400 2245000 2215300 1 1 1 1 1 1 1 1 1 1 1 1809000 2746100 51361 2331500 1911000 4174500 2400700 2425100 2022800 2293100 2305500 1684700 2560900 199270 2435400 1847800 4099700 2397900 2550100 2084400 2245000 2215300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2340600000 753870000 1586700000 5220 1475 4868 28226;28227 33748 33748 1 FAPPLVIKEDELR Unmodified 1525.8504 0.85042922 484 P04181;P04181-2 OAT Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form yes no 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 62.921 62.938 3 1.3876E-12 19117 20211116_3445_TMUAki_TMT10x_S_F6 132.06 111 4490800 7241300 46364 6981900 6157400 8237500 5323700 4362300 4401400 4495600 5342800 4181700 6756000 438870 7159800 5885900 8227300 5415100 4634800 4551500 4385100 5124900 1 1 1 1 1 1 1 1 1 1 1 4490800 7241300 46364 6981900 6157400 8237500 5323700 4362300 4401400 4495600 5342800 4181700 6756000 438870 7159800 5885900 8227300 5415100 4634800 4551500 4385100 5124900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 836510000 836510000 0 5221 484 4869 28228;28229 33749;33750 33750 2 FAQALGLTEAVK Unmodified 1246.6921 0.69213767 1428 P78347;P78347-2;P78347-4;P78347-3 GTF2I General transcription factor II-I yes no 0 0 0 0 By MS/MS 8 0 2 2 69.304 69.405 2;3 4.4808E-08 22070 20211116_3436_TMUAki_TMT10x_P_F8 115.14 84.572 3871200 6001300 0 6064400 4427900 6454600 3997900 2848300 3067500 3339300 4116200 3604000 5600100 261100 6188100 4230400 6470400 4048900 3092600 3198600 3241100 3938300 1 1 0 1 1 1 1 1 1 1 1 3871200 6001300 0 6064400 4427900 6454600 3997900 2848300 3067500 3339300 4116200 3604000 5600100 261100 6188100 4230400 6470400 4048900 3092600 3198600 3241100 3938300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 608570000 608570000 0 5222 1428 4870 28230;28231 33751;33752 33752 2 FAQFFLCPLFDESCK Unmodified 1907.8586 0.85862742 675 P14735 IDE Insulin-degrading enzyme yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 81.574 81.566 3 4.7588E-05 28391 20211116_3429_TMUAki_TMT10x_P_F2 91.207 78.581 6203800 9039800 267780 10064000 5268200 6819100 5930800 3230400 3948000 4774400 5829200 5778300 8438900 750800 10146000 5084300 7066300 5919900 3511800 4169900 4599300 5565000 2 2 2 2 2 2 2 2 2 2 2 4071100 5197200 118130 6118000 3190400 4344700 2904100 1904400 2567500 2785500 3167600 3791500 4852900 435280 6149800 3059100 4480700 2950300 2085800 2648000 2684100 3037100 1 1 1 1 1 1 1 1 1 1 1 2132700 3842600 149650 3946100 2077800 2474400 3026700 1326000 1380500 1988900 2661600 1986800 3586000 315510 3996400 2025200 2585700 2969500 1426000 1521900 1915200 2527900 1 1 1 1 1 1 1 1 1 1 1 774110000 446550000 327560000 5223 675 4871 28232;28233 33753;33754 33753 2 FAQHGTFEYEYSQR Unmodified 1761.7747 0.7746981 777 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 By MS/MS By MS/MS 5.39 1.66 1 3 3 4 5 5 2 10 13 39.993 40.153 3;4 8.3709E-36 11142 20211116_3442_TMUAki_TMT10x_S_F4 225.32 200.2 15186000 25347000 311750 30197000 27819000 34568000 18659000 22376000 24196000 20769000 21750000 14141000 23670000 1560400 30529000 26459000 34672000 19577000 23318000 24287000 20351000 21057000 27 27 14 27 27 27 27 27 27 27 27 10784000 17960000 259850 21635000 23317000 30175000 14700000 15570000 17220000 14531000 15073000 10043000 16772000 1155600 21940000 22153000 29886000 15439000 16536000 17332000 14235000 14607000 17 17 8 17 17 17 17 17 17 17 17 4401600 7387100 51905 8562000 4501900 4392500 3958600 6806200 6976500 6238100 6676400 4098700 6897400 404870 8589300 4305800 4786200 4137200 6781300 6954700 6115800 6449800 10 10 6 10 10 10 10 10 10 10 10 8932700000 4830000000 4102700000 5224 777 4872 28234;28235;28236;28237;28238;28239;28240;28241;28242;28243;28244;28245;28246;28247;28248;28249;28250;28251;28252;28253;28254;28255;28256 33755;33756;33757;33758;33759;33760;33761;33762;33763;33764;33765;33766;33767;33768;33769;33770;33771;33772;33773;33774;33775;33776;33777;33778;33779;33780;33781;33782;33783;33784;33785;33786;33787 33775 33 FAQPGSFEYEYAMR Oxidation (M) 1710.7348 0.73480712 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 1 0 By MS/MS By MS/MS 4.22 1.31 2 4 4 4 4 10 8 56.834 56.823 2;3 5.6967E-14 16312 20211116_3444_TMUAki_TMT10x_S_F5 145.49 135.98 73069000 126360000 550880 117840000 93458000 121820000 79821000 110450000 108820000 100610000 103560000 68035000 117880000 6181100 120880000 89273000 123600000 82577000 112580000 109250000 98671000 100060000 26 26 13 26 26 26 26 26 26 26 26 36756000 62295000 287550 57095000 50127000 83170000 45809000 52322000 51900000 48047000 50082000 34224000 58109000 3276700 59003000 47958000 82426000 46881000 54626000 52468000 47101000 48369000 14 14 9 14 14 14 14 14 14 14 14 36313000 64066000 263330 60746000 43332000 38648000 34012000 58131000 56921000 52568000 53477000 33811000 59768000 2904300 61875000 41315000 41173000 35696000 57953000 56783000 51570000 51694000 12 12 4 12 12 12 12 12 12 12 12 38257000000 20699000000 17558000000 5225 1779 4873 28257;28258;28259;28260;28261;28262;28263;28264;28265;28266;28267;28268;28269;28270;28271;28272;28273;28274 33788;33789;33790;33791;33792;33793;33794;33795;33796;33797;33798;33799;33800;33801;33802;33803;33804;33805;33806;33807;33808;33809;33810;33811;33812;33813 33811 2384 26 FAQPGSFEYEYAMR Unmodified 1694.7399 0.73989249 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 0 By MS/MS By MS/MS 5.31 1.14 1 2 4 4 2 7 6 63.14 63.27 2;3 1.0789E-50 18869 20211116_3434_TMUAki_TMT10x_P_F6 278.37 260.47 65855000 106870000 136420 111290000 71808000 67308000 72983000 37151000 31459000 40580000 68130000 61312000 99734000 4812500 112560000 68835000 70604000 72683000 39397000 35122000 39491000 64587000 14 14 4 14 14 14 14 14 14 14 14 28089000 44508000 34210 45232000 29257000 38581000 33208000 16005000 13896000 17261000 27688000 26150000 41533000 1952500 45993000 28127000 39207000 32880000 17450000 15472000 16806000 26283000 6 6 1 6 6 6 6 6 6 6 6 37767000 62358000 102210 66054000 42551000 28727000 39775000 21146000 17562000 23319000 40442000 35162000 58200000 2860000 66567000 40708000 31397000 39803000 21947000 19651000 22685000 38305000 8 8 3 8 8 8 8 8 8 8 8 12410000000 6137300000 6272600000 5226 1779 4873 28275;28276;28277;28278;28279;28280;28281;28282;28283;28284;28285;28286;28287 33814;33815;33816;33817;33818;33819;33820;33821;33822;33823;33824;33825;33826;33827;33828;33829 33820 16 FAQPGTFEFEYASR Unmodified 1648.7522 0.75217174 2323 Q8WXF1;Q8WXF1-2 PSPC1 Paraspeckle component 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.31 0.91 3 4 5 1 8 5 65.16 65.248 2;3 3.9806E-37 20862 20211116_3433_TMUAki_TMT10x_P_F5 245.48 225.49 43552000 75402000 588490 70474000 57153000 62595000 54545000 52505000 51302000 53877000 59799000 40552000 70340000 3976800 72125000 54747000 64027000 55363000 53933000 52635000 52562000 57423000 13 13 7 13 13 13 13 13 13 13 13 11997000 19420000 182750 17681000 13240000 23751000 14269000 12334000 12994000 13228000 15071000 11171000 18114000 1083200 18251000 12726000 23565000 14381000 13143000 13349000 12883000 14474000 4 4 3 4 4 4 4 4 4 4 4 31555000 55983000 405740 52793000 43913000 38843000 40276000 40170000 38308000 40648000 44728000 29381000 52226000 2893600 53874000 42021000 40461000 40983000 40790000 39286000 39679000 42949000 9 9 4 9 9 9 9 9 9 9 9 9830500000 3391400000 6439100000 5227 2323 4874 28288;28289;28290;28291;28292;28293;28294;28295;28296;28297;28298;28299;28300 33830;33831;33832;33833;33834;33835;33836;33837;33838;33839;33840;33841;33842;33843;33844;33845 33831 16 FAREEIIPVAAEYDK Unmodified 1749.8938 0.8937506 623 P11310;P11310-2 ACADM Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 4 0.707 1 2 1 3 1 58.638 58.633 3 2.1212E-09 17884 20211116_3431_TMUAki_TMT10x_P_F4 122.08 104.16 26264000 41855000 233590 46992000 32732000 33961000 23556000 21881000 23101000 20833000 29075000 24456000 39074000 2391700 47382000 31163000 35130000 24359000 22825000 23733000 20390000 27862000 5 5 2 5 5 5 5 5 5 5 5 17040000 26499000 30915 30476000 23935000 26960000 16541000 14272000 14827000 13252000 18829000 15866000 24741000 1483100 30757000 22762000 27397000 17112000 15121000 15301000 12985000 18040000 3 3 1 3 3 3 3 3 3 3 3 9224300 15356000 202670 16516000 8797600 7000700 7014900 7608800 8273300 7581100 10245000 8589900 14333000 908580 16625000 8400500 7732500 7247700 7704600 8431600 7405200 9822400 2 2 1 2 2 2 2 2 2 2 2 1778100000 1329300000 448820000 5228 623 4875 28301;28302;28303;28304 33846;33847;33848;33849;33850 33847 5 FARPDFR Unmodified 907.46644 0.46643525 367 O75915 ARL6IP5 PRA1 family protein 3 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 35.137 35.119 3 0.0061048 8011 20211116_3428_TMUAki_TMT10x_P_F1 97.033 69.508 1750800 2700600 18229 3048400 3232000 2692500 2156700 1975200 2105000 1877600 2536400 1630300 2521200 178970 3080000 3072800 2748800 2242300 2041600 2159000 1837800 2433400 4 4 2 4 4 4 4 4 4 4 4 905080 1400000 2946.3 1551300 2374300 1840600 1171600 1055700 1176500 992470 1292300 842730 1307000 97197 1576200 2246500 1839600 1251400 1111100 1200700 971900 1243100 2 2 1 2 2 2 2 2 2 2 2 845750 1300500 15283 1497100 857660 851950 985160 919550 928530 885170 1244000 787560 1214300 81773 1503800 826320 909220 990870 930500 958290 865920 1190300 2 2 1 2 2 2 2 2 2 2 2 141170000 66530000 74641000 5229 367 4876 28305;28306 33851;33852;33853;33854 33851 4 FASASIK Unmodified 722.39629 0.39629 3032 Q9NZI8;Q9NZI8-2 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes no 0 0 0 0 By MS/MS 7 0 1 1 40.853 41.456 2 0.0069512 12338 20211116_3446_TMUAki_TMT10x_S_F7 114.78 23.742 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5230 3032 4877 28307 33855 33855 1 FASENDLPEWK Unmodified 1334.6143 0.61428128 1030 P43487;P43487-2 RANBP1 Ran-specific GTPase-activating protein yes no 0 0 0 0 By MS/MS By MS/MS 4.1 0.943 1 1 4 4 6 4 63.287 63.294 2;3 1.5383E-11 19869 20211116_3431_TMUAki_TMT10x_P_F4 176.48 146.72 83486000 140610000 593930 181790000 119570000 97558000 102400000 46709000 48398000 54012000 106010000 77733000 131360000 7391500 181290000 114220000 103440000 103090000 50275000 53644000 52450000 100480000 11 11 7 11 11 11 11 11 11 11 11 38936000 64623000 349620 81277000 85168000 71756000 69934000 22457000 22687000 25372000 48862000 36254000 60362000 3908500 81597000 81282000 72580000 70271000 25408000 26076000 24659000 46325000 6 6 4 6 6 6 6 6 6 6 6 44550000 75987000 244300 100510000 34403000 25802000 32466000 24251000 25711000 28640000 57150000 41480000 70995000 3483100 99691000 32934000 30859000 32824000 24867000 27567000 27790000 54158000 5 5 3 5 5 5 5 5 5 5 5 7999200000 5002000000 2997200000 5231 1030 4878 28308;28309;28310;28311;28312;28313;28314;28315;28316;28317 33856;33857;33858;33859;33860;33861;33862;33863;33864;33865;33866;33867 33860 12 FASENDLPEWKER Unmodified 1619.758 0.7579854 1030 P43487;P43487-2 RANBP1 Ran-specific GTPase-activating protein yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 1 3 51.461 51.597 3 2.0247E-08 14201 20211116_3444_TMUAki_TMT10x_S_F5 113.59 96.219 7255800 12380000 0 12205000 14357000 15216000 11034000 9588500 9456200 9810200 11410000 6755000 11551000 584900 12508000 13675000 15189000 11317000 10040000 9758400 9572000 10946000 2 2 0 2 2 2 2 2 2 2 2 3972300 6461300 0 6227800 10627000 12138000 8172900 5260500 5088300 5052300 5999700 3698200 6028200 378400 6458200 10125000 11846000 8322900 5689300 5343800 4942900 5759500 1 1 0 1 1 1 1 1 1 1 1 3283500 5918800 0 5977000 3730100 3078800 2860700 4328100 4367900 4757900 5410500 3056700 5523100 206500 6050100 3550100 3343300 2993900 4350300 4414600 4629100 5187000 1 1 0 1 1 1 1 1 1 1 1 895550000 651910000 243640000 5232 1030 4879 28318;28319;28320;28321 33868;33869;33870;33871 33871 4 FASFNAYENHLK Unmodified 1439.6834 0.68336389 2396 Q969S3 ZNF622 Zinc finger protein 622 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 52.863 52.868 3 0.0011765 15313 20211116_3436_TMUAki_TMT10x_P_F8 74.987 58.414 6972900 11558000 171730 13010000 9729500 11691000 7787000 10867000 11077000 10480000 10628000 6493700 10790000 776760 13150000 9290700 11973000 8102100 11078000 11109000 10252000 10266000 2 2 2 2 2 2 2 2 2 2 2 3393400 5334600 46187 5805100 6505900 8520200 4589800 5123400 5359200 4812200 5057900 3160000 4979500 367980 5929500 6192800 8436000 4779600 5371300 5407700 4712700 4888500 1 1 1 1 1 1 1 1 1 1 1 3579500 6223400 125540 7205200 3223600 3170500 3197200 5743200 5718200 5668200 5569800 3333800 5810800 408780 7220800 3097900 3536600 3322500 5707200 5701700 5539000 5377600 1 1 1 1 1 1 1 1 1 1 1 431270000 318110000 113160000 5233 2396 4880 28322;28323 33872;33873 33872 2 FASHCLMNHPDLAK Oxidation (M) 1655.7548 0.75483105 2945;1875 Q29RF7;Q29RF7-3;Q9NTI5;Q9NTI5-2;Q9NTI5-3 PDS5A;PDS5B Sister chromatid cohesion protein PDS5 homolog A;Sister chromatid cohesion protein PDS5 homolog B no no 0 0 1 0 By MS/MS 7 0 1 1 35.446 35.88 4 0.040727 9745 20211116_3435_TMUAki_TMT10x_P_F7 40.477 28.095 260620 401170 3083.7 429450 491520 432020 292310 198830 210210 200950 298380 242680 374440 27715 436150 466470 434710 304380 213980 220570 196170 285110 1 1 1 1 1 1 1 1 1 1 1 260620 401170 3083.7 429450 491520 432020 292310 198830 210210 200950 298380 242680 374440 27715 436150 466470 434710 304380 213980 220570 196170 285110 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20089000 20089000 0 5234 1875;2945 4881 28324 33874 33874 2494 1 FASHCLMNHPDLAK Unmodified 1639.7599 0.75991643 2945;1875 Q29RF7;Q29RF7-3;Q9NTI5;Q9NTI5-2;Q9NTI5-3 PDS5A;PDS5B Sister chromatid cohesion protein PDS5 homolog A;Sister chromatid cohesion protein PDS5 homolog B no no 0 0 0 0 By MS/MS 8 0 1 1 40.418 40.653 4 9.6146E-07 9734 20211116_3447_TMUAki_TMT10x_S_F8 116.96 98.823 1824000 2540300 32421 3363500 1417700 1304200 1444800 1587500 1318500 1487100 2212800 1698600 2373500 175750 3342400 1362000 1462000 1460200 1596700 1378600 1456500 2106900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1824000 2540300 32421 3363500 1417700 1304200 1444800 1587500 1318500 1487100 2212800 1698600 2373500 175750 3342400 1362000 1462000 1460200 1596700 1378600 1456500 2106900 2 2 2 2 2 2 2 2 2 2 2 55718000 0 55718000 5235 1875;2945 4881 28325 33875;33876 33875 2 FASTVFPSDHIPSR Unmodified 1559.7732 0.77324153 1953 Q5VYK3 ECM29 Proteasome-associated protein ECM29 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 50.69 50.848 3 7.8275E-07 13899 20211116_3447_TMUAki_TMT10x_S_F8 98.592 81.567 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5236 1953 4882 28326;28327;28328 33877;33878;33879 33879 3 FASWALESDNNTALLLSK Unmodified 1979 6.5851004E-06 1615 Q13263;Q13263-2 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 0 By MS/MS By MS/MS 7.71 0.452 4 10 8 6 83.953 83.916 2;3 1.1072E-30 27937 20211116_3446_TMUAki_TMT10x_S_F7 180.28 164.03 44197000 74286000 156970 72683000 51398000 49656000 56413000 25081000 23379000 30432000 48848000 41150000 69311000 3588000 73917000 49398000 51454000 55937000 26901000 26133000 29501000 46334000 11 11 4 11 11 11 11 11 11 11 11 17366000 29049000 12401 28617000 19009000 26682000 21931000 10665000 9842500 13071000 19809000 16168000 27104000 1276900 29195000 18288000 26942000 21718000 11724000 10896000 12667000 18800000 5 5 2 5 5 5 5 5 5 5 5 26831000 45237000 144570 44066000 32390000 22973000 34482000 14416000 13537000 17361000 29040000 24982000 42206000 2311000 44722000 31110000 24513000 34219000 15177000 15238000 16834000 27533000 6 6 2 6 6 6 6 6 6 6 6 11633000000 5872300000 5760400000 5237 1615 4883 28329;28330;28331;28332;28333;28334;28335;28336;28337;28338;28339;28340;28341;28342 33880;33881;33882;33883;33884;33885;33886;33887;33888;33889;33890;33891;33892;33893;33894;33895 33889 16 FASYLTFSPSEVK Unmodified 1474.7344 0.73439641 1229 P54886;P54886-2 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes no 0 0 0 0 By MS/MS By MS/MS 4.62 3.39 3 1 4 3 5 75.306 75.248 2;3 1.8106E-14 26313 20211116_3439_TMUAki_TMT10x_S_F1 169.65 142.56 34706000 61642000 353080 56457000 41068000 42919000 41232000 33229000 32165000 34972000 44098000 32317000 57499000 3230700 57759000 39399000 44341000 41535000 34326000 33542000 34084000 42170000 7 7 6 7 7 7 7 7 7 7 7 11088000 18746000 19282 16734000 10897000 20326000 13548000 11432000 10822000 11476000 13400000 10323000 17484000 869750 17267000 10512000 20285000 13520000 12073000 11221000 11206000 12847000 2 2 1 2 2 2 2 2 2 2 2 23618000 42896000 333800 39723000 30170000 22594000 27684000 21797000 21342000 23496000 30698000 21993000 40015000 2361000 40492000 28887000 24056000 28015000 22253000 22322000 22878000 29323000 5 5 5 5 5 5 5 5 5 5 5 3387100000 1425800000 1961300000 5238 1229 4884 28343;28344;28345;28346;28347;28348;28349;28350 33896;33897;33898;33899;33900;33901;33902;33903 33899 8 FATASADGQIYIYDGK Unmodified 1718.8152 0.81516593 307 O75083;O75083-3 WDR1 WD repeat-containing protein 1 yes no 0 0 0 0 By MS/MS 6 0 1 1 65.77 65.761 3 0.031411 19923 20211116_3434_TMUAki_TMT10x_P_F6 44.567 24.989 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5239 307 4885 28351 33904 33904 1 FATDGEGYKPCDPQVIR Unmodified 1951.9098 0.90981137 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 48.619 48.764 3 1.3117E-07 13328 20211116_3445_TMUAki_TMT10x_S_F6 109.24 102.2 5608100 9879000 51359 12597000 11577000 12358000 7456500 8639800 8334300 8230500 9292700 5222100 9228300 596420 12655000 11000000 12521000 7806000 8959700 8474300 8055200 8934600 3 3 3 3 3 3 3 3 3 3 3 3626400 6503300 47402 8319300 10290000 10859000 6353700 5595400 5577500 5232600 5994800 3376900 6075000 438160 8396700 9770200 10787000 6626600 5943800 5722900 5125400 5770000 2 2 2 2 2 2 2 2 2 2 2 1981700 3375700 3956.1 4277400 1287400 1499300 1102800 3044400 2756800 2997900 3297900 1845200 3153300 158260 4258400 1230000 1733500 1179400 3015900 2751400 2929800 3164600 1 1 1 1 1 1 1 1 1 1 1 1385200000 1059000000 326240000 5240 1475 4886 28352;28353;28354 33905;33906;33907 33907 3 FATEAAITILR Unmodified 1204.6816 0.68157298 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 2.21 2 2 1 2 2 2 1 6 6 68.117 68.183 2 8.6453E-11 23516 20211116_3439_TMUAki_TMT10x_S_F1 160.75 139.21 82970000 136650000 810150 125900000 102550000 133580000 95028000 98895000 94717000 97304000 106160000 77256000 127470000 7546600 129310000 98169000 134830000 96775000 102250000 96778000 95097000 102060000 14 14 11 14 14 14 14 14 14 14 14 47600000 74815000 319510 70166000 54532000 91264000 56431000 50174000 49075000 50052000 56331000 44320000 69793000 3979800 72224000 52331000 90749000 56913000 53083000 50505000 48888000 54116000 8 8 5 8 8 8 8 8 8 8 8 35370000 61835000 490630 55734000 48021000 42315000 38597000 48721000 45642000 47252000 49831000 32936000 57676000 3566800 57088000 45838000 44080000 39862000 49169000 46273000 46209000 47940000 6 6 6 6 6 6 6 6 6 6 6 8772500000 3482000000 5290500000 5241 712 4887 28355;28356;28357;28358;28359;28360;28361;28362;28363;28364;28365;28366 33908;33909;33910;33911;33912;33913;33914;33915;33916;33917;33918;33919;33920;33921 33917 14 FATHAAALSVR Unmodified 1142.6196 0.61964142 777 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 By MS/MS By MS/MS 2.18 1.27 4 4 1 1 1 5 6 33.19 33.147 2;3 2.0191E-17 8177 20211116_3428_TMUAki_TMT10x_P_F1 192.26 154.13 10724000 18568000 134400 18159000 13807000 14031000 11880000 12460000 13896000 11798000 14673000 9985700 17325000 940300 18492000 13197000 14513000 12214000 12728000 14076000 11550000 14131000 11 11 8 11 11 11 11 11 11 11 11 2682100 4324100 6886.2 4277600 5567800 6540900 3097100 3485600 3731900 2775700 3513900 2497400 4034600 169780 4401000 5277000 6455200 3290400 3676800 3761100 2740200 3396500 3 3 2 3 3 3 3 3 3 3 3 8041600 14244000 127510 13882000 8239200 7489800 8782900 8974600 10164000 9022600 11159000 7488300 13290000 770530 14091000 7920400 8057700 8923200 9051300 10315000 8810000 10734000 8 8 6 8 8 8 8 8 8 8 8 2514700000 1413700000 1101000000 5242 777 4888 28367;28368;28369;28370;28371;28372;28373;28374;28375;28376;28377 33922;33923;33924;33925;33926;33927;33928;33929;33930;33931;33932;33933 33923 12 FATHGAALTVK Unmodified 1114.6135 0.61349341 2323 Q8WXF1;Q8WXF1-2 PSPC1 Paraspeckle component 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.14 3.09 2 2 1 2 4 3 39.345 39.509 3 1.9627E-11 11887 20211116_3439_TMUAki_TMT10x_S_F1 168.22 125.1 12943000 20228000 88003 21609000 19467000 19118000 14365000 13148000 14051000 12896000 16336000 12052000 18880000 1227400 21910000 18542000 19495000 14828000 13661000 14389000 12606000 15688000 11 11 6 11 11 11 11 11 11 11 11 7570400 11790000 55138 12399000 14491000 15074000 9460700 7888800 8218600 7771900 9431900 7049100 11004000 767560 12646000 13771000 15030000 9821000 8379900 8458400 7595300 9061000 6 6 4 6 6 6 6 6 6 6 6 5372800 8438300 32864 9210500 4976200 4043300 4904300 5258900 5832200 5124400 6904000 5002800 7876700 459830 9264400 4770900 4465100 5007200 5281500 5930700 5010300 6626800 5 5 2 5 5 5 5 5 5 5 5 1065600000 637760000 427820000 5243 2323 4889 28378;28379;28380;28381;28382;28383;28384 33934;33935;33936;33937;33938;33939;33940;33941;33942;33943;33944;33945 33941 12 FAVALLDDSVR Unmodified 1204.6452 0.64518747 2928 Q9NRG9 AAAS Aladin yes yes 0 0 0 0 By MS/MS 4 0 1 1 72.919 72.785 2 1.4939E-05 24181 20211116_3442_TMUAki_TMT10x_S_F4 105.2 79.458 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5244 2928 4890 28385 33946 33946 1 FAVATLPPA Unmodified 885.496 0.49600404 837 P28072 PSMB6 Proteasome subunit beta type-6 yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 68.624 68.76 2 0.00028822 21505 20211116_3445_TMUAki_TMT10x_S_F6 94.669 70.514 3243000 5346600 33482 5162300 4113400 4811400 3866600 3474500 3303600 3385600 3907100 3019800 4988300 312260 5274100 3939900 4893100 3917500 3597400 3406900 3310200 3750300 2 2 2 2 2 2 2 2 2 2 2 1296300 2083400 4578.2 2048100 1530400 2715700 1695800 1454300 1481200 1449000 1583500 1207000 1943900 115020 2101900 1471800 2697000 1704800 1542100 1519900 1415400 1524300 1 1 1 1 1 1 1 1 1 1 1 1946800 3263200 28903 3114200 2583000 2095700 2170800 2020200 1822400 1936600 2323600 1812800 3044400 197250 3172300 2468100 2196000 2212700 2055300 1887000 1894800 2226000 1 1 1 1 1 1 1 1 1 1 1 774470000 360130000 414340000 5245 837 4891 28386;28387;28388;28389 33947;33948;33949;33950 33949 4 FAVFGLGNK Unmodified 951.5178 0.51780212 696 P16435 POR NADPH--cytochrome P450 reductase yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 68.569 68.645 2 0.00032592 22538 20211116_3442_TMUAki_TMT10x_S_F4 92.925 36.803 7872700 13220000 159570 11585000 10879000 16887000 9891600 10098000 9577600 10081000 9702700 7331400 12329000 843520 12014000 10416000 16724000 10075000 10609000 9761700 9846100 9356000 1 1 1 1 1 1 1 1 1 1 1 7872700 13220000 159570 11585000 10879000 16887000 9891600 10098000 9577600 10081000 9702700 7331400 12329000 843520 12014000 10416000 16724000 10075000 10609000 9761700 9846100 9356000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 395400000 395400000 0 5246 696 4892 28390;28391 33951;33952 33952 2 FAVGIVIGR Unmodified 930.56509 0.56508666 2408;2407;2494 Q96AE4-2;Q96AE4;Q96I24;Q96I24-2 FUBP1;FUBP3 Far upstream element-binding protein 1;Far upstream element-binding protein 3 no no 0 0 0 0 By matching By MS/MS 4.5 0.5 1 1 1 1 63.005 63.095 2 4.2333E-05 18887 20211116_3444_TMUAki_TMT10x_S_F5 151.17 105.29 6703900 10790000 0 10484000 8257000 7295000 8216100 7809000 7130900 8006000 6900200 6241700 10067000 538170 10669000 7913700 7639900 8302500 7919600 7293800 7811000 6663500 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6703900 10790000 0 10484000 8257000 7295000 8216100 7809000 7130900 8006000 6900200 6241700 10067000 538170 10669000 7913700 7639900 8302500 7919600 7293800 7811000 6663500 2 2 0 2 2 2 2 2 2 2 2 615600000 295650000 319950000 5247 2408;2407;2494 4893 28392;28393 33953;33954 33953 2 FAVLHGEAPR Unmodified 1095.5825 0.58252764 1249 P55884;P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 0 0 0 0 By MS/MS By MS/MS 6.2 0.653 2 8 5 14 1 30.379 30.445 2;3 2.9116E-09 9353 20211116_3433_TMUAki_TMT10x_P_F5 142 97.792 3796300 5740200 173870 6385500 5551600 6264700 4093200 3536500 3636800 3461700 4531900 3535900 5358700 483420 6466900 5295800 6328200 4214000 3731200 3751600 3384000 4344000 21 21 17 21 21 21 21 21 21 21 21 3233200 4969700 173870 5363200 4932700 5861200 3600700 2981400 3027000 2951900 3856700 3011600 4638700 448660 5451000 4706400 5875600 3704200 3175700 3134000 2884200 3694700 20 20 17 20 20 20 20 20 20 20 20 563140 770540 0 1022400 618840 403510 492500 555180 609850 509840 675220 524240 719930 34762 1015900 589370 452650 509800 555450 617600 499810 649340 1 1 0 1 1 1 1 1 1 1 1 331150000 185080000 146070000 5248 1249 4894 28394;28395;28396;28397;28398;28399;28400;28401;28402;28403;28404;28405;28406;28407;28408 33955;33956;33957;33958;33959;33960;33961;33962;33963;33964;33965;33966;33967;33968;33969;33970;33971;33972;33973;33974;33975;33976;33977;33978;33979;33980 33955 26 FAVYLPPK Unmodified 933.53239 0.53238955 612 P10768 ESD S-formylglutathione hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 64.381 64.056 2 0.0010467 20076 20211116_3440_TMUAki_TMT10x_S_F2 129.16 74.611 26529000 43234000 263630 47890000 31414000 34283000 29817000 29378000 26440000 29187000 33634000 24702000 40359000 2444100 48323000 30092000 35654000 30223000 30111000 27301000 28513000 32223000 6 6 5 6 6 6 6 6 6 6 6 9125400 13558000 116860 16208000 12933000 16546000 11208000 8955100 8595200 9058300 10848000 8497000 12661000 849340 16352000 12360000 16664000 11378000 9491100 8938500 8842500 10395000 2 2 1 2 2 2 2 2 2 2 2 17403000 29676000 146770 31682000 18480000 17737000 18609000 20423000 17845000 20129000 22786000 16205000 27699000 1594700 31971000 17732000 18990000 18846000 20620000 18363000 19671000 21827000 4 4 4 4 4 4 4 4 4 4 4 1278800000 422490000 856310000 5249 612 4895 28409;28410;28411;28412 33981;33982;33983;33984;33985;33986;33987 33984 7 FAVYLPPKAETGK Unmodified 1419.7762 0.77620165 612 P10768 ESD S-formylglutathione hydrolase yes yes 0 0 0 1 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 57.757 57.504 3 1.0764E-06 18605 20211116_3429_TMUAki_TMT10x_P_F2 117.93 95.734 14335000 21975000 279890 23531000 33543000 38381000 20547000 23026000 21164000 19678000 21550000 13349000 20510000 1718300 24118000 31853000 37839000 21541000 24086000 21518000 19356000 20777000 2 2 2 2 2 2 2 2 2 2 2 14335000 21975000 279890 23531000 33543000 38381000 20547000 23026000 21164000 19678000 21550000 13349000 20510000 1718300 24118000 31853000 37839000 21541000 24086000 21518000 19356000 20777000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 739120000 739120000 0 5250 612 4896 28413;28414;28415 33988;33989;33990;33991 33990 4 FAYVPFGAGR Unmodified 1083.5502 0.55016488 1867 Q16850;Q16850-2 CYP51A1 Lanosterol 14-alpha demethylase yes no 0 0 0 0 By matching By MS/MS 3.33 0.471 2 1 1 2 62.055 61.773 2 0.0011202 21965 20211116_3441_TMUAki_TMT10x_S_F3 94.539 76.772 5441900 9721100 250280 9466600 7032900 6094600 5607500 7044600 6028400 6043300 7794600 5068800 9069900 706700 9625000 6722800 6438100 5775500 7084600 6177100 5943400 7464500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5441900 9721100 250280 9466600 7032900 6094600 5607500 7044600 6028400 6043300 7794600 5068800 9069900 706700 9625000 6722800 6438100 5775500 7084600 6177100 5943400 7464500 1 1 1 1 1 1 1 1 1 1 1 757630000 215540000 542090000 5251 1867 4897 28416;28417;28418 33992 33992 1 FCADCIITALR Unmodified 1338.6424 0.64242706 2577 Q99496;Q99496-2 RNF2 E3 ubiquitin-protein ligase RING2 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 72.558 72.495 2 2.944E-14 22784 20211116_3447_TMUAki_TMT10x_S_F8 183.67 138.59 8670500 14384000 190380 13908000 9534800 12637000 9154200 8502500 7215400 8340700 10657000 8074500 13420000 908380 14203000 9144400 12859000 9245400 8848600 7547300 8152700 10174000 2 2 2 2 2 2 2 2 2 2 2 4400600 7156300 135590 6819700 4098900 7953600 4818400 4193200 3842700 4171600 5586700 4098400 6676300 486980 6998000 3956600 7948200 4819700 4452500 4013900 4075100 5335300 1 1 1 1 1 1 1 1 1 1 1 4269900 7227900 54795 7088300 5435900 4683300 4335800 4309300 3372600 4169100 5070100 3976100 6743900 421400 7205100 5187900 4911000 4425700 4396100 3533400 4077600 4838400 1 1 1 1 1 1 1 1 1 1 1 1185600000 788810000 396770000 5252 2577 4898 28419;28420 33993;33994 33994 2 FCADHPFLFFIQHSK Unmodified 1892.9032 0.90320985 925 P35237 SERPINB6 Serpin B6 yes yes 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 70.354 70.058 4 1.196E-06 23015 20211116_3442_TMUAki_TMT10x_S_F4 109.55 97.861 9276400 15610000 64684 14158000 13687000 9709600 11197000 9235900 7684100 9596000 11102000 8637300 14561000 832790 14480000 13061000 10155000 11379000 9425100 8092200 9357200 10604000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9276400 15610000 64684 14158000 13687000 9709600 11197000 9235900 7684100 9596000 11102000 8637300 14561000 832790 14480000 13061000 10155000 11379000 9425100 8092200 9357200 10604000 3 3 1 3 3 3 3 3 3 3 3 1089500000 0 1089500000 5253 925 4899 28421;28422 33995;33996;33997 33997 3 FCADSDGFSQELR Unmodified 1530.6409 0.64090673 1184 P52732 KIF11 Kinesin-like protein KIF11 yes yes 0 0 0 0 By MS/MS 3 0 1 1 55.077 54.69 2 3.7461E-28 19054 20211116_3441_TMUAki_TMT10x_S_F3 215.04 172.65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5254 1184 4900 28423 33998 33998 1 FCANTCVECR Unmodified 1315.5108 0.51076096 1659 Q13642-1;Q13642-5;Q13642-4;Q13642;Q13642-3 FHL1 Four and a half LIM domains protein 1 yes no 0 0 0 0 By matching By MS/MS 4.5 0.5 1 1 1 1 35.471 35.571 2 1.2067E-09 7684 20211116_3444_TMUAki_TMT10x_S_F5 189.18 168.28 201070 321950 0 397360 164490 150450 170710 187570 224460 159800 262840 187200 300690 15298 396360 157830 169330 174500 188000 227360 157210 252360 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 201070 321950 0 397360 164490 150450 170710 187570 224460 159800 262840 187200 300690 15298 396360 157830 169330 174500 188000 227360 157210 252360 1 1 0 1 1 1 1 1 1 1 1 41865000 22831000 19034000 5255 1659 4901 28424;28425 33999 33999 1 FCFTPHTEEGCLSER Unmodified 1868.7822 0.78216801 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 4 1.41 2 2 2 2 2 5 5 46.485 46.504 3 7.7238E-38 15650 20211116_3441_TMUAki_TMT10x_S_F3 242.91 230.76 42657000 74571000 569910 76905000 64930000 81589000 45686000 54393000 52285000 47901000 57147000 39719000 69591000 3845800 78361000 61786000 82218000 47551000 56481000 53075000 47050000 54978000 14 14 9 14 14 14 14 14 14 14 14 28493000 49136000 447180 51577000 53114000 70957000 36810000 37887000 35817000 32750000 38805000 26531000 45858000 2645000 52734000 50526000 70348000 38159000 40036000 36587000 32197000 37341000 8 8 4 8 8 8 8 8 8 8 8 14164000 25435000 122740 25328000 11816000 10632000 8876000 16506000 16468000 15151000 18343000 13188000 23733000 1200900 25627000 11260000 11869000 9392000 16445000 16487000 14853000 17637000 6 6 5 6 6 6 6 6 6 6 6 12993000000 6892100000 6101300000 5256 1092 4902 28426;28427;28428;28429;28430;28431;28432;28433;28434;28435 34000;34001;34002;34003;34004;34005;34006;34007;34008;34009;34010;34011;34012;34013 34009 14 FCHGILTK Unmodified 974.50077 0.50077184 2375 Q92896;Q92896-2;Q92896-3 GLG1 Golgi apparatus protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 41.64 41.598 3 0.0010054 10618 20211116_3428_TMUAki_TMT10x_P_F1 106.36 82.799 3188900 4990700 46522 5094700 5857000 5142200 3811300 3291500 3125300 2981900 4122300 2969500 4657200 345110 5190800 5567300 5194000 3951700 3430700 3244900 2925000 3945800 3 3 3 3 3 3 3 3 3 3 3 2391400 3739000 36876 3813200 5066800 4490300 3033500 2448700 2298400 2207000 3067700 2226900 3489200 270100 3895000 4809400 4486800 3160600 2585500 2397700 2165400 2935500 2 2 2 2 2 2 2 2 2 2 2 797510 1251700 9646 1281400 790180 651860 777780 842750 826890 774920 1054600 742630 1168100 75006 1295800 757930 707200 791110 845190 847150 759620 1010300 1 1 1 1 1 1 1 1 1 1 1 189180000 109280000 79899000 5257 2375 4903 28436;28437;28438 34014;34015;34016 34014 3 FCIWTESAFR Unmodified 1315.6019 0.60194245 953 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 0 0 By MS/MS By MS/MS 2.8 2.64 2 2 1 3 2 73.296 73.225 2 1.9268E-33 23730 20211116_3440_TMUAki_TMT10x_S_F2 283.57 239.13 48360000 78056000 68993 79319000 56659000 69826000 61446000 28469000 22432000 31564000 52235000 45025000 72839000 3760500 80687000 54424000 70791000 60869000 31125000 25585000 30699000 49467000 7 7 2 7 7 7 7 7 7 7 7 37175000 57753000 27570 60310000 45617000 61053000 48594000 22019000 17571000 24370000 39333000 34611000 53899000 2823200 61357000 43790000 61274000 48175000 24427000 20005000 23705000 37269000 5 5 1 5 5 5 5 5 5 5 5 11185000 20303000 41424 19008000 11042000 8773400 12851000 6450400 4860800 7193400 12902000 10414000 18940000 937310 19330000 10634000 9516900 12694000 6697800 5580000 6994800 12197000 2 2 1 2 2 2 2 2 2 2 2 5004800000 2897800000 2107000000 5258 953 4904 28439;28440;28441;28442;28443 34017;34018;34019;34020;34021;34022;34023 34023 7 FCKYEHDDIVSTVSVLSSGTQAVSGSK Unmodified 2900.3862 0.38620218 2627 Q9BQA1 WDR77 Methylosome protein 50 yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 2.87 2 2 1 1 3 3 66.458 66.418 4 8.777E-18 22751 20211116_3439_TMUAki_TMT10x_S_F1 133.15 116.35 9322200 16072000 316600 15541000 12174000 12747000 10610000 10294000 9208700 9786900 12440000 8682300 14995000 1107900 15850000 11653000 13103000 10801000 10575000 9544300 9579300 11900000 4 4 4 4 4 4 4 4 4 4 4 2312500 3757600 28498 3806100 2334100 4676700 2859600 2646100 2133700 2134700 2903000 2153400 3506400 218580 3892500 2253000 4665000 2850700 2777500 2229800 2106000 2776600 1 1 1 1 1 1 1 1 1 1 1 7009700 12315000 288110 11735000 9839500 8070600 7750600 7648000 7075000 7652200 9536600 6528900 11489000 889290 11958000 9399500 8438300 7950100 7797400 7314500 7473300 9123400 3 3 3 3 3 3 3 3 3 3 3 4685600000 2684100000 2001600000 5259 2627 4905 28444;28445;28446;28447;28448;28449 34024;34025;34026;34027 34025 4 FCLDNGAK Unmodified 923.4171 0.41710179 473 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 45.661 45.814 2 0.01116 12132 20211116_3445_TMUAki_TMT10x_S_F6 81.296 53.122 5147100 8653800 47955 9991600 9337000 8479300 6576800 7594800 8174600 6303300 7713500 4792500 8079900 502010 10076000 8884400 8711600 6864900 7727900 8230000 6209300 7455200 2 2 1 2 2 2 2 2 2 2 2 2937900 4850700 0 5471900 7473500 6620000 4416500 4416700 4796800 3732300 4392200 2735300 4528500 279010 5555500 7087300 6623700 4651400 4581300 4848900 3673400 4249500 1 1 0 1 1 1 1 1 1 1 1 2209100 3803200 47955 4519700 1863500 1859300 2160400 3178100 3377800 2571000 3321300 2057300 3551400 223000 4520500 1797100 2087900 2213500 3146600 3381000 2535900 3205700 1 1 1 1 1 1 1 1 1 1 1 178270000 108770000 69494000 5260 473 4906 28450;28451 34028;34029 34029 2 FCLGLLSNVNR Unmodified 1291.6707 0.67069072 1830;1452 Q15797;Q99717;P84022-4;P84022;Q15796;O15198;P84022-3;P84022-2;O15198-2;Q15796-2 SMAD1;SMAD5;SMAD3;SMAD2;SMAD9 Mothers against decapentaplegic homolog 1;Mothers against decapentaplegic homolog 5;Mothers against decapentaplegic homolog 3;Mothers against decapentaplegic homolog 2;Mothers against decapentaplegic homolog 9 no no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 69.388 69.45 2 1.2089E-17 22369 20211116_3431_TMUAki_TMT10x_P_F4 196.88 169.39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5261 1830;1452 4907 28452;28453;28454 34030;34031;34032 34030 3 FCNPGFPIGCYITDK Unmodified 1787.8011 0.80111254 2606 Q99805 TM9SF2 Transmembrane 9 superfamily member 2 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 77.223 77.208 3 1.287E-06 27096 20211116_3439_TMUAki_TMT10x_S_F1 105.46 77.163 8578500 14831000 151780 11961000 9606700 14466000 10788000 9777400 8507100 9759400 10950000 7988600 13828000 867070 12442000 9250200 14477000 10810000 10177000 8841000 9532300 10487000 2 2 2 2 2 2 2 2 2 2 2 4311900 6920700 57720 5191700 4383000 9323400 5463800 5819900 4965100 5500600 5506300 4015200 6451300 412270 5480300 4233300 9164500 5470200 6084600 5092200 5385300 5294900 1 1 1 1 1 1 1 1 1 1 1 4266700 7910500 94060 6769000 5223600 5142700 5323800 3957400 3542000 4258800 5443400 3973400 7377100 454800 6961800 5016900 5312700 5339800 4092500 3748800 4147000 5192200 1 1 1 1 1 1 1 1 1 1 1 1750700000 1176600000 574070000 5262 2606 4908 28455;28456;28457 34033;34034 34034 2 FCNRYPNIELSYEVVDKDSIR Unmodified 2616.2642 0.26423655 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 2 By MS/MS By MS/MS 7 0.816 1 1 1 2 1 61.442 61.69 4 3.5207E-44 20013 20211116_3435_TMUAki_TMT10x_P_F7 207.54 187.81 21841000 40380000 80887 32343000 28735000 45166000 30283000 33303000 32387000 32454000 31725000 20336000 37649000 1870900 33754000 27589000 44954000 30702000 34433000 32833000 31731000 30624000 5 5 2 5 5 5 5 5 5 5 5 13941000 24613000 50768 20232000 17052000 33822000 19703000 21383000 20003000 20065000 19398000 12980000 22950000 1172100 21152000 16415000 33338000 19857000 22329000 20315000 19650000 18731000 3 3 1 3 3 3 3 3 3 3 3 7900000 15767000 30119 12111000 11683000 11343000 10580000 11919000 12384000 12389000 12327000 7355600 14699000 698890 12602000 11174000 11616000 10845000 12104000 12518000 12080000 11893000 2 2 1 2 2 2 2 2 2 2 2 4075300000 3149400000 925890000 5263 352 4909 28458;28459;28460 34035;34036;34037;34038;34039 34037 5 FCNTVHDIVNR Unmodified 1373.651 0.65101791 3155 Q9UKF6 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 41.744 41.909 3 1.1405E-05 12309 20211116_3435_TMUAki_TMT10x_P_F7 103.44 61.563 773160 1324000 11187 1452700 638570 588410 602820 999930 1016200 873710 1115400 719970 1235900 72641 1460000 612070 661990 626130 992110 1019200 858510 1072900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 773160 1324000 11187 1452700 638570 588410 602820 999930 1016200 873710 1115400 719970 1235900 72641 1460000 612070 661990 626130 992110 1019200 858510 1072900 1 1 1 1 1 1 1 1 1 1 1 62358000 0 62358000 5264 3155 4910 28461;28462 34040;34041 34040 2 FCPFAER Unmodified 925.41162 0.41162248 1432 P78417;P78417-2;P78417-3 GSTO1 Glutathione S-transferase omega-1 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 47.702 47.862 2 0.020668 12925 20211116_3445_TMUAki_TMT10x_S_F6 87.284 69.436 2829900 4830200 0 5573200 2932200 2430800 2595900 4487300 4343400 3171200 4600700 2634900 4509800 235890 5586100 2803100 2716400 2704800 4419200 4351300 3151300 4430200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2829900 4830200 0 5573200 2932200 2430800 2595900 4487300 4343400 3171200 4600700 2634900 4509800 235890 5586100 2803100 2716400 2704800 4419200 4351300 3151300 4430200 1 1 0 1 1 1 1 1 1 1 1 188980000 0 188980000 5265 1432 4911 28463;28464 34042;34043 34043 2 FCTGLTQIETLFK Unmodified 1556.7909 0.79086543 642 P12277 CKB Creatine kinase B-type yes yes 0 0 0 0 By MS/MS By MS/MS 2.95 2 7 27 11 2 4 4 30 25 53.124 53.063 2;3 1.2448E-43 27660 20211116_3429_TMUAki_TMT10x_P_F2 278.79 236.81 457830000 729580000 1489000 734220000 436620000 666190000 481270000 331350000 241210000 365520000 501040000 426240000 680790000 32002000 747680000 419400000 675340000 478410000 354820000 265120000 355580000 475290000 52 53 21 54 53 54 53 52 52 52 53 292910000 457750000 1418100 453550000 256310000 488310000 287390000 212410000 156180000 235240000 312450000 272700000 427110000 20285000 463510000 246310000 489110000 285820000 230570000 170170000 228800000 296570000 30 31 9 32 31 32 31 30 30 30 31 164930000 271830000 70925 280670000 180310000 177880000 193890000 118950000 85036000 130290000 188590000 153550000 253680000 11717000 284170000 173090000 186230000 192590000 124250000 94947000 126780000 178720000 22 22 12 22 22 22 22 22 22 22 22 69240000000 35339000000 33900000000 5266 642 4912 28465;28466;28467;28468;28469;28470;28471;28472;28473;28474;28475;28476;28477;28478;28479;28480;28481;28482;28483;28484;28485;28486;28487;28488;28489;28490;28491;28492;28493;28494;28495;28496;28497;28498;28499;28500;28501;28502;28503;28504;28505;28506;28507;28508;28509;28510;28511;28512;28513;28514;28515;28516;28517;28518;28519 34044;34045;34046;34047;34048;34049;34050;34051;34052;34053;34054;34055;34056;34057;34058;34059;34060;34061;34062;34063;34064;34065;34066;34067;34068;34069;34070;34071;34072;34073;34074;34075;34076;34077;34078;34079;34080;34081;34082;34083;34084;34085;34086;34087;34088;34089;34090;34091;34092;34093;34094;34095;34096;34097;34098;34099;34100;34101;34102;34103;34104 34058 61 FDAERPVDCSVIVVNK Unmodified 1846.9247 0.92473315 2865 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 yes yes 0 0 0 1 By MS/MS 5.5 0.5 1 1 2 55.319 55.445 3 7.0629E-16 15735 20211116_3444_TMUAki_TMT10x_S_F5 158.64 131.61 5626000 9221900 12146 10604000 5168500 4999700 4248000 7915400 7645300 7500000 8039400 5238300 8610200 450760 10637000 4932000 5504600 4462300 7888200 7643100 7342000 7743100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5626000 9221900 12146 10604000 5168500 4999700 4248000 7915400 7645300 7500000 8039400 5238300 8610200 450760 10637000 4932000 5504600 4462300 7888200 7643100 7342000 7743100 2 2 1 2 2 2 2 2 2 2 2 636510000 0 636510000 5267 2865 4913 28520;28521 34105;34106 34105 2 FDAGELITQR Unmodified 1148.5826 0.58258722 924 P35232 PHB Prohibitin yes yes 0 0 0 0 By MS/MS By MS/MS 3.89 0.737 3 4 2 5 4 56.565 56.564 2;3 1.126E-07 17579 20211116_3442_TMUAki_TMT10x_S_F4 115.7 83.857 96630000 149090000 1049000 172900000 133640000 150440000 99755000 129310000 132880000 123990000 126730000 89974000 139210000 8719900 174370000 127300000 154170000 103980000 132380000 133520000 121310000 122440000 7 7 4 7 7 7 7 7 7 7 7 47680000 65856000 713740 76869000 88236000 110800000 61992000 63377000 63857000 57693000 59912000 44398000 61492000 4960300 78148000 83973000 109720000 64311000 66661000 64742000 56580000 57917000 4 4 3 4 4 4 4 4 4 4 4 48951000 83238000 335310 96029000 45408000 39642000 37764000 65935000 69028000 66296000 66817000 45576000 77717000 3759600 96219000 43331000 44453000 39673000 65722000 68777000 64733000 64524000 3 3 1 3 3 3 3 3 3 3 3 9993700000 5477600000 4516100000 5268 924 4914 28522;28523;28524;28525;28526;28527;28528;28529;28530 34107;34108;34109;34110;34111;34112;34113;34114;34115 34114 9 FDAMPFTLR Unmodified 1096.5376 0.53755128 3217 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 0 0 By MS/MS By MS/MS 5 3.29 2 1 2 2 3 71.569 71.57 2 6.596E-05 22792 20211116_3428_TMUAki_TMT10x_P_F1 145.13 100.41 30062000 50756000 217010 49476000 36749000 36399000 35905000 24573000 19769000 25101000 35691000 27992000 47356000 2772600 50369000 35227000 37621000 35964000 25597000 21382000 24494000 33937000 6 6 5 6 6 6 6 6 6 6 6 11098000 17221000 14521 17478000 13199000 17708000 14286000 7186400 5634700 7816900 11918000 10333000 16070000 947370 17816000 12683000 17789000 14166000 7856500 6333900 7608400 11303000 2 2 1 2 2 2 2 2 2 2 2 18964000 33535000 202490 31998000 23550000 18691000 21619000 17386000 14134000 17284000 23773000 17659000 31286000 1825200 32553000 22544000 19832000 21798000 17740000 15048000 16885000 22634000 4 4 4 4 4 4 4 4 4 4 4 2496800000 1328400000 1168400000 5269 3217 4915 28531;28532;28533;28534;28535 34116;34117;34118;34119;34120;34121 34116 6 FDAMPFTLR Oxidation (M) 1112.5325 0.5324659 3217 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 1 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 49.299 49.607 2 0.063505 19538 20211116_3435_TMUAki_TMT10x_P_F7 57.047 41.826 16425000 28904000 180500 27731000 22060000 26847000 19417000 27648000 25986000 24349000 25363000 15294000 26966000 1574900 28360000 21094000 27422000 20037000 27972000 26127000 23916000 24486000 5 5 4 5 5 5 5 5 5 5 5 5692600 9730400 0 8999800 9008600 15027000 7915900 10528000 10153000 8518300 9240200 5300100 9076800 484430 9323000 8608100 14836000 8155800 10871000 10199000 8402200 8942000 1 1 0 1 1 1 1 1 1 1 1 10732000 19173000 180500 18732000 13052000 11820000 11501000 17121000 15833000 15830000 16123000 9994200 17889000 1090500 19037000 12486000 12587000 11881000 17101000 15928000 15514000 15544000 4 4 4 4 4 4 4 4 4 4 4 1412700000 1012700000 399930000 5270 3217 4915 28536;28537;28538 34122;34123 34122 3200 2 FDASFFGVHPK Unmodified 1250.6084 0.60840804 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 4.86 3.09 2 1 2 2 3 4 62.546 62.669 3 4.6177E-07 19156 20211116_3428_TMUAki_TMT10x_P_F1 134.3 112.56 41968000 69267000 248470 69505000 43515000 55196000 38815000 45605000 42876000 44551000 48188000 39078000 64635000 3654800 70676000 41616000 56897000 39743000 46820000 43630000 43554000 46321000 8 8 4 8 8 8 8 8 8 8 8 17787000 28596000 67541 28543000 20774000 34179000 19123000 19733000 17875000 18891000 19364000 16562000 26683000 1576200 29207000 19882000 34147000 19445000 20767000 18292000 18485000 18634000 3 3 1 3 3 3 3 3 3 3 3 24181000 40671000 180930 40962000 22741000 21017000 19692000 25872000 25001000 25660000 28824000 22516000 37952000 2078600 41469000 21735000 22750000 20298000 26054000 25337000 25070000 27687000 5 5 3 5 5 5 5 5 5 5 5 14669000000 7695600000 6973900000 5271 1092 4916 28539;28540;28541;28542;28543;28544;28545 34124;34125;34126;34127;34128;34129;34130;34131 34124 8 FDCHYCRDPLQGK Unmodified 1694.7293 0.72934458 1659 Q13642-1;Q13642-5;Q13642-4;Q13642;Q13642-3 FHL1 Four and a half LIM domains protein 1 yes no 0 0 0 1 By MS/MS 6 0 1 1 39.544 39.562 4 0.00013596 9214 20211116_3434_TMUAki_TMT10x_P_F6 93.348 82.714 4055700 5495900 0 7642100 14378000 10750000 5603800 5567200 6456600 5308200 5753400 3776100 5136300 465880 7691100 13564000 10643000 6169300 5914200 6506200 5195000 5571900 2 2 0 2 2 2 2 2 2 2 2 4055700 5495900 0 7642100 14378000 10750000 5603800 5567200 6456600 5308200 5753400 3776100 5136300 465880 7691100 13564000 10643000 6169300 5914200 6506200 5195000 5571900 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 122410000 122410000 0 5272 1659 4917 28546 34132;34133 34132 2 FDCSSAPDICSNLYVFQPSLAVFK Unmodified 2764.2877 0.28767411 2154 Q8IXB1;Q8IXB1-2 DNAJC10 DnaJ homolog subfamily C member 10 yes no 0 0 0 0 By MS/MS 2 0 1 1 80.833 80.818 3 0.0013086 26851 20211116_3440_TMUAki_TMT10x_S_F2 58.974 46.296 576370 1066600 6269 1088700 1054400 972400 931940 757050 718140 698880 926360 536710 995360 60322 1107400 1008300 992950 945090 778850 747330 684960 887180 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 576370 1066600 6269 1088700 1054400 972400 931940 757050 718140 698880 926360 536710 995360 60322 1107400 1008300 992950 945090 778850 747330 684960 887180 1 1 1 1 1 1 1 1 1 1 1 195110000 0 195110000 5273 2154 4918 28547 34134 34134 1 FDDDKVSIVTPEDILR Unmodified 1860.9469 0.94690838 1220 P54578;P54578-2;P54578-3 USP14 Ubiquitin carboxyl-terminal hydrolase 14 yes no 0 0 0 1 By MS/MS By MS/MS 3.8 1.17 1 1 1 2 3 2 73.047 72.914 3 6.6826E-29 24237 20211116_3442_TMUAki_TMT10x_S_F4 185.25 159.38 11631000 21633000 11390 22406000 13778000 13170000 15095000 13501000 13423000 14740000 16606000 10829000 20189000 996240 22666000 13244000 13994000 15191000 13748000 13842000 14345000 15920000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11631000 21633000 11390 22406000 13778000 13170000 15095000 13501000 13423000 14740000 16606000 10829000 20189000 996240 22666000 13244000 13994000 15191000 13748000 13842000 14345000 15920000 2 2 1 2 2 2 2 2 2 2 2 1127500000 0 1127500000 5274 1220 4919 28548;28549;28550;28551;28552 34135;34136;34137;34138;34139;34140 34139 6 FDDPGLMLMGFKPLVLLK 2 Oxidation (M) 2065.0992 0.099192044 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 2 1 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 79.42 79.37 3 0.00041532 27991 20211116_3430_TMUAki_TMT10x_P_F3 66.826 52.132 10823000 20027000 69201 13097000 13571000 37571000 17273000 35540000 35488000 35224000 23882000 10078000 18661000 879240 14216000 13110000 36720000 17891000 36227000 34894000 34415000 23398000 4 4 3 4 4 4 4 4 4 4 4 7344700 13086000 39366 8289900 7860900 27364000 10411000 23389000 23589000 23843000 15296000 6839000 12193000 652850 9081100 7603900 26611000 10835000 23994000 23127000 23267000 15012000 2 2 2 2 2 2 2 2 2 2 2 3478400 6940300 29836 4806800 5710100 10207000 6861900 12151000 11900000 11382000 8586400 3239000 6468000 226400 5135200 5505900 10109000 7056000 12233000 11768000 11148000 8385600 2 2 1 2 2 2 2 2 2 2 2 4419800000 1551200000 2868600000 5275 647 4920 28553;28554;28555 34141;34142;34143;34144 34142 689;690 4 FDDPGLMLMGFKPLVLLKK 2 Oxidation (M) 2193.1942 0.19415506 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 2 2 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 77.892 77.906 4 0.00027655 25849 20211116_3431_TMUAki_TMT10x_P_F4 63.691 54.748 13796000 27247000 389320 14179000 22271000 37623000 25631000 26395000 23317000 26194000 24029000 12849000 25376000 1625300 15738000 21462000 36629000 25751000 27397000 23847000 25591000 23158000 2 2 2 2 2 2 2 2 2 2 2 7392200 14469000 215860 7369400 10657000 27120000 15918000 16077000 14162000 16258000 12946000 6884400 13475000 859770 8314800 10364000 26162000 15817000 16909000 14441000 15871000 12526000 1 1 1 1 1 1 1 1 1 1 1 6404300 12778000 173460 6809400 11613000 10503000 9713400 10317000 9154400 9936400 11083000 5964300 11901000 765580 7423500 11098000 10467000 9934700 10488000 9405900 9720100 10632000 1 1 1 1 1 1 1 1 1 1 1 3785500000 2683800000 1101800000 5276 647 4921 28556;28557 34145;34146 34145 689;690 2 FDDPLLGPR Unmodified 1028.5291 0.52909508 3064 Q9P2J5;Q9P2J5-2;Q9P2J5-3 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 59.373 59.213 2 4.287E-05 18123 20211116_3431_TMUAki_TMT10x_P_F4 151.04 110.97 29314000 46760000 211530 46867000 42403000 54618000 35802000 46817000 43805000 42473000 43050000 27296000 43633000 2757100 47921000 40501000 54988000 36908000 47864000 44188000 41660000 41552000 5 5 4 5 5 5 5 5 5 5 5 17593000 26615000 78182 27266000 29096000 42296000 24307000 27875000 25847000 25494000 25141000 16381000 24837000 1638800 27995000 27780000 41837000 24954000 28998000 26202000 24997000 24274000 3 3 2 3 3 3 3 3 3 3 3 11721000 20145000 133350 19601000 13306000 12323000 11495000 18942000 17959000 16979000 17909000 10915000 18795000 1118300 19926000 12721000 13151000 11955000 18866000 17985000 16664000 17278000 2 2 2 2 2 2 2 2 2 2 2 2767500000 1518700000 1248800000 5277 3064 4922 28558;28559;28560;28561;28562;28563 34147;34148;34149;34150;34151;34152;34153 34149 7 FDEFFSAGCAPGSPR Unmodified 1643.7038 0.70384134 49 CON__Q29443;CON__Q0IIK2 yes no 0 0 0 0 By MS/MS 6 0 1 1 68.585 68.549 3 0.00017909 21070 20211116_3434_TMUAki_TMT10x_P_F6 76.82 68.844 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5278 49 4923 28564 34154 34154 1 FDEGRNNFEGEVTK Unmodified 1640.7431 0.74306362 533 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 1 By MS/MS 3 0 1 1 43.821 43.855 3 2.3546E-19 13415 20211116_3430_TMUAki_TMT10x_P_F3 174.62 148.63 647340 798420 10916 1466500 2276800 1502500 806090 690970 715280 481840 862020 602820 747500 86664 1449400 2146800 1510200 891740 737220 736860 479200 827020 1 1 1 1 1 1 1 1 1 1 1 647340 798420 10916 1466500 2276800 1502500 806090 690970 715280 481840 862020 602820 747500 86664 1449400 2146800 1510200 891740 737220 736860 479200 827020 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 96545000 96545000 0 5279 533 4924 28565 34155 34155 1 FDEGRNNFEGEVTKENLLDFIK Unmodified 2613.2711 0.27109607 533 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 2 By MS/MS By MS/MS 5 1.29 1 1 2 1 1 2 4 76.864 76.851 4 0.0035607 24534 20211116_3444_TMUAki_TMT10x_S_F5 58.92 37.792 44145000 78040000 2590500 66050000 58259000 73419000 63865000 50327000 43866000 50984000 58897000 41123000 72775000 6271800 68339000 56159000 73821000 63869000 52354000 46034000 49767000 56350000 5 5 5 5 5 5 5 5 5 5 5 14215000 25473000 362290 20824000 13188000 28476000 17741000 15287000 14048000 16338000 17296000 13238000 23751000 1501800 21687000 12782000 28241000 17643000 16240000 14569000 15914000 16585000 1 1 1 1 1 1 1 1 1 1 1 29930000 52568000 2228200 45225000 45070000 44943000 46124000 35040000 29817000 34646000 41601000 27884000 49024000 4770000 46651000 43377000 45580000 46226000 36114000 31466000 33853000 39766000 4 4 4 4 4 4 4 4 4 4 4 5291200000 1491500000 3799700000 5280 533 4925 28566;28567;28568;28569;28570;28571 34156;34157;34158 34158 3 FDEISFVNFAR Unmodified 1343.651 0.65100113 1550 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.6 1.58 1 1 2 1 4 6 12 3 58.514 58.549 2 4.8229E-16 27364 20211116_3446_TMUAki_TMT10x_S_F7 212.03 190.57 19162000 31180000 210550 28620000 24293000 22028000 22663000 20342000 18379000 19967000 24657000 17843000 29084000 1855500 29279000 23265000 22810000 22941000 20756000 19108000 19516000 23591000 4 4 3 4 4 4 4 4 4 4 4 1063000 1809900 20146 1619500 1056100 1854200 1279800 968170 958700 979110 1264200 989880 1688100 105620 1669100 1019400 1854600 1276600 1029400 1000200 955800 1210100 3 3 2 3 3 3 3 3 3 3 3 18099000 29370000 190410 27000000 23237000 20174000 21383000 19374000 17420000 18988000 23393000 16853000 27396000 1749900 27610000 22246000 20955000 21664000 19727000 18107000 18560000 22381000 1 1 1 1 1 1 1 1 1 1 1 11132000000 2861300000 8270900000 5281 1550 4926 28572;28573;28574;28575;28576;28577;28578;28579;28580;28581;28582;28583;28584;28585;28586 34159;34160;34161;34162;34163;34164;34165;34166;34167;34168 34168 10 FDFDSDEDFNAFFNSSR Unmodified 2058.8232 0.82316443 2852 Q9HAV4 XPO5 Exportin-5 yes yes 0 0 0 0 By MS/MS 1 0 1 1 80.018 79.982 3 6.2206E-12 28215 20211116_3439_TMUAki_TMT10x_S_F1 139.49 134.94 2961300 5283200 41624 5362400 3650700 3471800 3772400 2861700 2947500 3328400 4009300 2757600 4930100 293960 5436700 3506000 3639800 3794600 2954300 3072400 3231500 3834800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2961300 5283200 41624 5362400 3650700 3471800 3772400 2861700 2947500 3328400 4009300 2757600 4930100 293960 5436700 3506000 3639800 3794600 2954300 3072400 3231500 3834800 2 2 2 2 2 2 2 2 2 2 2 376930000 0 376930000 5282 2852 4927 28587 34169;34170 34169 2 FDFLCQYHKPASK Unmodified 1639.7817 0.78169773 2947 Q9NTK5;Q9NTK5-3 OLA1 Obg-like ATPase 1 yes no 0 0 0 1 By matching By MS/MS 2.5 0.5 1 1 1 1 53.994 53.679 4 0.009589 18655 20211116_3441_TMUAki_TMT10x_S_F3 60.401 48.235 3349000 5724800 0 5927700 3063600 3148300 2681300 4594700 4303000 4533500 5039300 3118100 5342600 264760 5991300 2927300 3411300 2789900 4596800 4332800 4430100 4838400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3349000 5724800 0 5927700 3063600 3148300 2681300 4594700 4303000 4533500 5039300 3118100 5342600 264760 5991300 2927300 3411300 2789900 4596800 4332800 4430100 4838400 1 1 0 1 1 1 1 1 1 1 1 480710000 229270000 251440000 5283 2947 4928 28588;28589 34171 34171 1 FDGALNVDLTEFQTNLVPYPR Unmodified 2408.2012 0.20122559 1417;2044;2007 P68363;P68363-2;P68366;P68366-2;Q71U36;Q71U36-2;Q9BQE3;P0DPH8;P0DPH7;P0DPH7-2;Q9NY65;Q9NY65-2;Q6PEY2 TUBA1B;TUBA4A;TUBA1A;TUBA1C;TUBA8;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-8 chain;Tubulin alpha-3E chain no no 0 0 0 0 By MS/MS By MS/MS 5.11 1.45 1 3 2 3 6 3 80.425 80.428 2;3 9.3685E-89 26897 20211116_3431_TMUAki_TMT10x_P_F4 264 228.27 15938000 26145000 62884 24474000 17844000 26368000 21047000 14646000 14824000 17442000 18702000 14839000 24389000 779920 25114000 17188000 26481000 20989000 15566000 15490000 16919000 17921000 8 8 2 8 8 8 8 8 8 8 8 9323600 16209000 62884 15474000 10520000 18388000 12777000 8030000 9601100 10383000 11794000 8681400 15122000 517530 15881000 10146000 18320000 12744000 8757500 9984300 10043000 11310000 5 5 2 5 5 5 5 5 5 5 5 6614100 9936000 0 9000200 7323800 7979800 8269900 6616000 5222500 7058900 6907600 6157900 9267800 262390 9232500 7042300 8161600 8244700 6808800 5506200 6875900 6611300 3 3 0 3 3 3 3 3 3 3 3 14939000000 7975600000 6963200000 5284 1417;2044;2007 4929 28590;28591;28592;28593;28594;28595;28596;28597;28598 34172;34173;34174;34175;34176;34177;34178;34179;34180;34181 34174 10 FDGILGMAYPR Unmodified 1238.6118 0.61177885 536 P07339 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes yes 0 0 0 0 By MS/MS 1 0 1 1 74.901 74.901 2 1.9335E-05 24203 20211116_3428_TMUAki_TMT10x_P_F1 111.46 81.471 3492500 5330200 49956 5385800 3533900 5447800 4464800 2567200 2300900 2536800 4215900 3252200 4973800 336690 5491400 3414900 5481300 4413200 2754700 2503400 2478800 4007700 1 1 1 1 1 1 1 1 1 1 1 3492500 5330200 49956 5385800 3533900 5447800 4464800 2567200 2300900 2536800 4215900 3252200 4973800 336690 5491400 3414900 5481300 4413200 2754700 2503400 2478800 4007700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 287700000 287700000 0 5285 536 4930 28599 34182 34182 1 FDGILGMAYPR Oxidation (M) 1254.6067 0.60669348 536 P07339 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes yes 0 0 1 0 By MS/MS By MS/MS 7 0 2 1 1 63.681 64.245 2 0.015984 21127 20211116_3435_TMUAki_TMT10x_P_F7 62.969 44.354 18521000 32565000 20898 30272000 24378000 30310000 21987000 28050000 25717000 26704000 27825000 17244000 30378000 1490700 31045000 23306000 30825000 22543000 28593000 26074000 26136000 26777000 4 4 2 4 4 4 4 4 4 4 4 5414800 9726600 16596 8498700 7957600 14084000 7205000 8352400 7999300 8054100 8668000 5041900 9071300 500010 8840300 7612200 13874000 7372300 8772400 8126900 7878300 8341000 1 1 1 1 1 1 1 1 1 1 1 13106000 22838000 4301.8 21773000 16420000 16226000 14782000 19697000 17717000 18650000 19157000 12202000 21306000 990740 22204000 15694000 16950000 15171000 19820000 17947000 18257000 18436000 3 3 1 3 3 3 3 3 3 3 3 1175500000 708880000 466570000 5286 536 4930 28600;28601 34183;34184;34185;34186 34183 462 4 FDGILTEGEGPRR Unmodified 1445.7263 0.72629134 2484 Q96HE7 ERO1L ERO1-like protein alpha yes yes 0 0 0 1 By MS/MS 4 0 1 1 46.259 46.449 3 2.6371E-22 13339 20211116_3442_TMUAki_TMT10x_S_F4 174.39 147.69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5287 2484 4931 28602 34187 34187 1 FDGSENRPFSPSPLNNISSTVTVK Unmodified 2592.282 0.2819951 1945 Q5UIP0;Q5UIP0-2 RIF1 Telomere-associated protein RIF1 yes no 0 0 0 1 By MS/MS 8 0 1 1 64.299 64.273 4 3.0975E-06 19389 20211116_3447_TMUAki_TMT10x_S_F8 81.949 60.146 2914600 5258800 0 4323600 4042200 3303800 3507800 4084400 3716100 3765500 3927500 2713600 4903600 245290 4461600 3861600 3446100 3592500 4103800 3778900 3690700 3782200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2914600 5258800 0 4323600 4042200 3303800 3507800 4084400 3716100 3765500 3927500 2713600 4903600 245290 4461600 3861600 3446100 3592500 4103800 3778900 3690700 3782200 1 1 0 1 1 1 1 1 1 1 1 925640000 0 925640000 5288 1945 4932 28603 34188 34188 1 FDIEMSMRGDIFER 2 Oxidation (M) 1776.7811 0.78110538 2732 Q9BYT8 NLN Neurolysin, mitochondrial yes yes 0 0 2 1 By MS/MS 1 0 1 1 73.944 73.852 2 0.025777 25725 20211116_3439_TMUAki_TMT10x_S_F1 48.998 36.382 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5289 2732 4933 28604 34189 34189 2922;2923 1 FDILCVVR Unmodified 1020.5426 0.54263666 1114 P49736 MCM2 DNA replication licensing factor MCM2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.25 3.27 2 1 1 3 1 72.794 72.871 2 0.0020519 23423 20211116_3436_TMUAki_TMT10x_P_F8 129.68 88.696 25288000 42278000 120560 38362000 27997000 43134000 27771000 23688000 22040000 24019000 28943000 23546000 39436000 2173500 39483000 26841000 43210000 28004000 25076000 22918000 23444000 27707000 4 4 2 4 4 4 4 4 4 4 4 19490000 32262000 120560 28617000 21476000 37237000 22515000 18280000 16282000 18072000 21788000 18147000 30090000 1699500 29580000 20622000 36977000 22590000 19537000 17032000 17659000 20848000 3 3 2 3 3 3 3 3 3 3 3 5798400 10017000 0 9745200 6520500 5896300 5256500 5407700 5758700 5946400 7154900 5398800 9345500 474060 9903300 6219300 6233200 5413600 5539000 5886100 5785400 6858800 1 1 0 1 1 1 1 1 1 1 1 1519500000 1041600000 477930000 5290 1114 4934 28605;28606;28607;28608 34190;34191;34192;34193;34194 34193 5 FDINDATGDLDANRPVPFR Unmodified 2132.0287 0.028680952 3294 Q9Y4A5;Q9Y4A5-2 TRRAP Transformation/transcription domain-associated protein yes no 0 0 0 1 By MS/MS 5 0 1 1 65.48 65.606 3 0.0076687 21023 20211116_3433_TMUAki_TMT10x_P_F5 53.453 40.686 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5291 3294 4935 28609 34195 34195 1 FDLLASNFPPLPGSSSR Unmodified 1803.9155 0.91554867 2043 Q71RC2;Q71RC2-5;Q71RC2-6;Q71RC2-4;Q71RC2-3;Q71RC2-2 LARP4 La-related protein 4 yes no 0 0 0 0 By MS/MS 3 0 1 1 79.331 79.28 3 1.4178E-07 28956 20211116_3441_TMUAki_TMT10x_S_F3 102.58 82.9 1124800 1731500 10835 2003300 1301100 1440300 1379600 1063600 1024000 1314100 1513700 1047400 1616700 105820 2016100 1250200 1493500 1384300 1107900 1074700 1273100 1445000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1124800 1731500 10835 2003300 1301100 1440300 1379600 1063600 1024000 1314100 1513700 1047400 1616700 105820 2016100 1250200 1493500 1384300 1107900 1074700 1273100 1445000 1 1 1 1 1 1 1 1 1 1 1 550920000 0 550920000 5292 2043 4936 28610 34196 34196 1 FDLMYAK Unmodified 886.42588 0.42587556 1417;2044;2007 P68363;P68363-2;P68366;P68366-2;A6NHL2;A6NHL2-2;Q71U36;Q71U36-2;Q9BQE3;P0DPH8;P0DPH7;Q9NY65;Q9NY65-2;Q6PEY2 TUBA1B;TUBA4A;TUBAL3;TUBA1A;TUBA1C;TUBA8;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-8 chain;Tubulin alpha-3E chain no no 0 0 0 0 By MS/MS By MS/MS 7 0.707 1 2 1 3 1 63.909 64.236 2 0.0026043 21065 20211116_3435_TMUAki_TMT10x_P_F7 123.96 66.855 67154000 108240000 830350 134040000 103430000 104020000 82406000 52093000 42820000 50240000 83477000 62533000 101090000 6818400 134480000 98690000 106650000 83461000 55530000 46736000 49143000 79269000 6 6 4 6 6 6 6 6 6 6 6 46601000 75915000 830350 88271000 90918000 91501000 66436000 41805000 34589000 38759000 58117000 43396000 70883000 5236000 89227000 86610000 91899000 67684000 44922000 37417000 37980000 55335000 5 5 4 5 5 5 5 5 5 5 5 20553000 32322000 0 45773000 12509000 12520000 15969000 10288000 8230100 11481000 25360000 19137000 30210000 1582400 45249000 12080000 14756000 15778000 10608000 9319200 11163000 23934000 1 1 0 1 1 1 1 1 1 1 1 2770800000 2250800000 519960000 5293 1417;2044;2007 4937 28611;28612;28613;28614 34197;34198;34199;34200;34201;34202 34200 6 FDLQVEHPYQFLLK Unmodified 1775.9247 0.9246568 366 O75909;O75909-1;O75909-2;O75909-4 CCNK Cyclin-K yes no 0 0 0 0 By MS/MS 8 0 1 1 76.734 76.656 3 1.8957E-06 24456 20211116_3447_TMUAki_TMT10x_S_F8 87.18 67.341 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5294 366 4938 28615 34203 34203 1 FDLSQNHPLGMAIFLK Oxidation (M) 1845.9447 0.94474031 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 1 0 By MS/MS 2 0 1 1 71.428 71.29 3 9.8443E-05 22963 20211116_3440_TMUAki_TMT10x_S_F2 80.609 52.961 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5295 1092 4939 28616 34204 34204 1423 1 FDPAMFNISPGAVQF Oxidation (M) 1655.7654 0.76537896 2138 Q8IVD9 NUDCD3 NudC domain-containing protein 3 yes yes 0 0 1 0 By MS/MS By MS/MS 7.33 0.667 1 4 4 5 4 81.53 81.541 2;3 0.00016551 28906 20211116_3446_TMUAki_TMT10x_S_F7 92.409 83.455 5532700 9217200 66890 8777900 6383600 9028900 7144800 6236400 6139400 6565600 7167700 5151600 8599000 486750 8989600 6141000 9119800 7176300 6491500 6326200 6398800 6882600 7 7 3 7 7 7 7 7 7 7 7 3332100 5333900 62394 5093800 3170400 6203800 3994500 3635700 3759300 3748900 4340400 3102800 4976200 311900 5230100 3063100 6193900 4001400 3829500 3855400 3656700 4169100 3 3 2 3 3 3 3 3 3 3 3 2200500 3883400 4496.6 3684100 3213200 2825100 3150300 2600700 2380100 2816700 2827300 2048700 3622800 174850 3759600 3078000 2926000 3174900 2662000 2470900 2742100 2713500 4 4 1 4 4 4 4 4 4 4 4 1086900000 506170000 580760000 5296 2138 4940 28617;28618;28619;28620;28621;28622;28623;28624;28625 34205;34206;34207;34208;34209;34210;34211;34212 34210 2606 8 FDPAMFNISPGAVQF Unmodified 1639.7705 0.77046434 2138 Q8IVD9 NUDCD3 NudC domain-containing protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 7.43 0.728 1 2 4 4 3 82.808 82.814 2;3 2.8463E-06 27539 20211116_3436_TMUAki_TMT10x_P_F8 108.31 93.894 3328300 5044400 19311 4969100 3767000 4483700 4024100 3033400 3135100 3366000 3727900 3098800 4706600 262600 5067300 3617200 4565100 4040900 3167300 3249400 3273700 3577800 9 9 2 9 9 9 9 9 9 9 9 1621500 2409500 19311 2311900 1560200 2683500 1928500 1365900 1481800 1590300 1771000 1509800 2247900 134590 2371000 1505300 2681200 1923000 1461900 1537200 1543900 1699400 5 5 2 5 5 5 5 5 5 5 5 1706700 2634900 0 2657200 2206900 1800300 2095700 1667500 1653400 1775700 1957000 1589000 2458700 128010 2696400 2111900 1883900 2117900 1705300 1712200 1729800 1878400 4 4 0 4 4 4 4 4 4 4 4 454930000 246520000 208400000 5297 2138 4940 28626;28627;28628;28629;28630;28631;28632 34213;34214;34215;34216;34217;34218;34219;34220 34214 8 FDPETNSDDACTYHPGVPVFHDALK Unmodified 2831.2497 0.2497087 3117 Q9UHD1;Q9UHD1-2 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 yes no 0 0 0 0 By MS/MS 5 0.816 1 1 1 3 58.931 58.952 4 1.9847E-17 18556 20211116_3442_TMUAki_TMT10x_S_F4 137.16 129.96 10619000 19863000 58118 20451000 12670000 11723000 10595000 13522000 12509000 13722000 15317000 9887100 18537000 825300 20692000 12091000 12521000 10915000 13664000 12742000 13393000 14689000 4 4 3 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10619000 19863000 58118 20451000 12670000 11723000 10595000 13522000 12509000 13722000 15317000 9887100 18537000 825300 20692000 12091000 12521000 10915000 13664000 12742000 13393000 14689000 4 4 3 4 4 4 4 4 4 4 4 1542400000 0 1542400000 5298 3117 4941 28633;28634;28635 34221;34222;34223;34224 34221 4 FDPTQFQDCIIQGLTETGTDLEAVAK Unmodified 2896.3801 0.38005417 2052 Q7L1Q6;Q7L1Q6-2;Q7L1Q6-4;Q7L1Q6-3 BZW1 Basic leucine zipper and W2 domain-containing protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 83.391 83.392 3 8.9292E-51 28095 20211116_3431_TMUAki_TMT10x_P_F4 218.25 204.08 464580 950950 10413 687340 640750 1374300 771030 1052500 858520 868390 867340 432650 886350 38240 730100 618290 1350500 777980 1080800 869880 855700 836420 2 2 1 2 2 2 2 2 2 2 2 332830 694300 10413 469650 400070 1171900 591890 854200 656970 699260 637910 309980 647020 38240 505490 389060 1143400 592360 879890 664830 689320 615960 1 1 1 1 1 1 1 1 1 1 1 131750 256650 0 217690 240690 202380 179140 198300 201550 169130 229430 122670 239340 0 224600 229230 207030 185620 200950 205050 166380 220460 1 1 0 1 1 1 1 1 1 1 1 344430000 327190000 17236000 5299 2052 4942 28636;28637 34225;34226 34225 2 FDPYEHEALFHTPVEGKEPGTVALVSK Unmodified 2996.492 0.49198788 2853 Q9HAV7 GRPEL1 GrpE protein homolog 1, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 6.25 1.09 1 2 1 2 2 62.383 62.425 5 2.2321E-12 18942 20211116_3445_TMUAki_TMT10x_S_F6 109.68 102.88 27495000 48565000 781550 49547000 36431000 44712000 32150000 36626000 34142000 34822000 37367000 25606000 45320000 3133100 50404000 34871000 45666000 32897000 37593000 34761000 34084000 35947000 6 6 6 6 6 6 6 6 6 6 6 13191000 22699000 230260 23981000 17687000 27853000 17106000 15547000 15051000 15358000 17429000 12284000 21185000 1371200 24432000 16958000 27860000 17318000 16422000 15486000 15007000 16739000 3 3 3 3 3 3 3 3 3 3 3 14304000 25866000 551300 25566000 18744000 16858000 15044000 21079000 19090000 19465000 19939000 13323000 24135000 1761900 25972000 17913000 17806000 15578000 21171000 19274000 19077000 19208000 3 3 3 3 3 3 3 3 3 3 3 4004800000 1733300000 2271500000 5300 2853 4943 28638;28639;28640;28641 34227;34228;34229;34230;34231 34230 5 FDPYTLAIDVLDSPQAVR Unmodified 2019.0313 0.031306713 529 P07101;P07101-3;P07101-4;P07101-2;P07101-6;P07101-5 TH Tyrosine 3-monooxygenase yes no 0 0 0 0 By MS/MS By MS/MS 5 0.816 1 1 1 1 2 82.031 82.039 3 7.1584E-05 27551 20211116_3431_TMUAki_TMT10x_P_F4 77.506 66.066 1230000 2052100 7013.7 2110700 1502700 1625000 1493800 1095200 1105600 1212400 1494200 1145200 1915000 104450 2141900 1440500 1673500 1503700 1143700 1155500 1179200 1429400 2 2 1 2 2 2 2 2 2 2 2 584530 894770 0 977290 624990 873820 653520 498290 442530 524660 699040 544190 835220 41144 989620 599470 888130 654870 526360 468530 511330 666400 1 1 0 1 1 1 1 1 1 1 1 645460 1157300 7013.7 1133400 877670 751210 840270 596880 663060 687710 795200 601040 1079800 63302 1152200 841040 785390 848790 617370 686990 667910 763010 1 1 1 1 1 1 1 1 1 1 1 278690000 183180000 95509000 5301 529 4944 28642;28643;28644 34232;34233;34234 34232 3 FDPYTLAIDVLDSPQAVRR Unmodified 2175.1324 0.13241774 529 P07101;P07101-3;P07101-4;P07101-2;P07101-6;P07101-5 TH Tyrosine 3-monooxygenase yes no 0 0 0 1 By MS/MS 8 0 1 1 79.908 79.912 3 0.10688 26361 20211116_3436_TMUAki_TMT10x_P_F8 28.611 17.667 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5302 529 4945 28645 34235 34235 1 FDQLFDDESDPFEVLK Unmodified 1942.8836 0.88363942 2232 Q8NC51;Q8NC51-3;Q8NC51-2;Q8NC51-4 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 0 0 0 0 By MS/MS By MS/MS 2.65 1.55 6 7 4 3 2 1 9 14 73.224 73.209 2;3 4.9091E-47 28304 20211116_3429_TMUAki_TMT10x_P_F2 253.15 228.86 156630000 263430000 629710 231370000 148330000 223150000 194550000 120990000 126550000 150030000 188060000 145830000 245690000 12157000 238180000 143340000 225550000 192820000 129040000 133900000 145330000 179510000 31 31 12 31 31 31 31 31 31 31 31 76830000 124430000 248120 106310000 69833000 129680000 82114000 57480000 62937000 74802000 88839000 71533000 116040000 5906200 110090000 67244000 129050000 82056000 62604000 65786000 72342000 84897000 9 9 3 9 9 9 9 9 9 9 9 79802000 139000000 381590 125060000 78500000 93474000 112440000 63509000 63613000 75231000 99223000 74300000 129650000 6250400 128090000 76100000 96500000 110760000 66435000 68115000 72991000 94615000 22 22 9 22 22 22 22 22 22 22 22 27188000000 16864000000 10324000000 5303 2232 4946 28646;28647;28648;28649;28650;28651;28652;28653;28654;28655;28656;28657;28658;28659;28660;28661;28662;28663;28664;28665;28666;28667;28668 34236;34237;34238;34239;34240;34241;34242;34243;34244;34245;34246;34247;34248;34249;34250;34251;34252;34253;34254;34255;34256;34257;34258;34259;34260;34261;34262;34263;34264;34265;34266;34267 34240 32 FDREVDIGIPDATGR Unmodified 1659.8216 0.82164829 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 1 3 54.58 54.667 3 3.4723E-07 16261 20211116_3431_TMUAki_TMT10x_P_F4 118.55 98.943 8334300 13458000 98126 14729000 9349100 10327000 7609300 10785000 11012000 10164000 11350000 7760800 12562000 796640 14870000 8926500 10802000 7914800 10924000 11066000 9952500 10939000 3 3 3 3 3 3 3 3 3 3 3 2532500 3973800 26588 4314200 4450200 5420900 2994800 2936900 3079300 2946000 3104500 2358200 3709200 261600 4393700 4232100 5398400 3116500 3111700 3129900 2876900 2994000 1 1 1 1 1 1 1 1 1 1 1 5801800 9483700 71538 10415000 4898900 4905800 4614500 7848100 7932900 7218200 8245800 5402600 8852800 535040 10477000 4694400 5403600 4798300 7812100 7936300 7075600 7944700 2 2 2 2 2 2 2 2 2 2 2 912110000 531430000 380690000 5304 1235 4947 28669;28670;28671;28672 34268;34269;34270;34271;34272 34268 5 FDREVDIGIPDATGRLEILQIHTK Unmodified 2735.4606 0.46062817 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 2 By MS/MS 6.5 0.5 1 1 2 69.642 69.842 5 6.5252E-08 23485 20211116_3435_TMUAki_TMT10x_P_F7 98.019 84.564 4247600 7395400 0 6941000 5156800 8302600 5914100 4399300 3701400 4398000 5293500 3954800 6899000 354940 7133400 4963000 8286500 5890900 4669900 3918900 4295400 5057200 1 1 0 1 1 1 1 1 1 1 1 4247600 7395400 0 6941000 5156800 8302600 5914100 4399300 3701400 4398000 5293500 3954800 6899000 354940 7133400 4963000 8286500 5890900 4669900 3918900 4295400 5057200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1369200000 1369200000 0 5305 1235 4948 28673;28674 34273 34273 1 FDRGYISPYFINTSK Unmodified 1806.8941 0.89408495 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.816 2 2 2 4 2 63.851 63.597 3 6.1453E-24 22654 20211116_3441_TMUAki_TMT10x_S_F3 189.32 163.45 47003000 72049000 471490 91014000 56391000 48899000 37799000 37513000 32305000 35040000 47333000 43765000 67300000 4152800 90880000 53611000 52157000 39143000 38641000 33639000 34324000 45196000 6 6 4 6 6 6 6 6 6 6 6 25666000 39846000 245720 51348000 27591000 35847000 23479000 19990000 18377000 19051000 25260000 23898000 37224000 2093800 51339000 26348000 37118000 23873000 21097000 19163000 18645000 24154000 3 3 2 3 3 3 3 3 3 3 3 21337000 32202000 225770 39666000 28800000 13053000 14320000 17523000 13928000 15989000 22074000 19868000 30076000 2059000 39541000 27263000 15039000 15270000 17544000 14476000 15679000 21042000 3 3 2 3 3 3 3 3 3 3 3 5039100000 2914200000 2124900000 5306 613 4949 28675;28676;28677;28678;28679;28680 34274;34275;34276;34277;34278;34279;34280 34280 7 FDRPPAR Unmodified 857.45079 0.45078518 1855 Q16629;Q16629-3;Q16629-2;Q16629-4 SRSF7 Serine/arginine-rich splicing factor 7 yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 27.556 27.545 3 0.0029934 5770 20211116_3433_TMUAki_TMT10x_P_F5 107.43 33.014 234300 374560 8881 349570 316070 426730 333620 283580 268270 232190 290290 218220 349410 28847 359540 304040 426750 335460 294010 276560 228890 279350 2 2 2 2 2 2 2 2 2 2 2 234300 374560 8881 349570 316070 426730 333620 283580 268270 232190 290290 218220 349410 28847 359540 304040 426750 335460 294010 276560 228890 279350 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19404000 19404000 0 5307 1855 4950 28681;28682 34281;34282 34282 2 FDSEPSAVALELPTR Unmodified 1630.8203 0.82025131 719 P18583;P18583-3;P18583-5;P18583-6;P18583-10;P18583-4;P18583-7;P18583-9;P18583-2;P18583-8 SON Protein SON yes no 0 0 0 0 By MS/MS 3 0 1 1 66.864 66.574 2 1.0552E-19 22854 20211116_3430_TMUAki_TMT10x_P_F3 145.83 117.11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5308 719 4951 28683 34283 34283 1 FDSEYER Unmodified 944.38758 0.3875758 1026 P43243 MATR3 Matrin-3 yes yes 0 0 0 0 By MS/MS 2 0 1 1 33.507 33.588 2 0.011512 7581 20211116_3440_TMUAki_TMT10x_S_F2 97.033 82.62 316180 563190 5395.6 589430 344300 279430 444440 242450 249190 246080 403050 294430 525610 30515 594830 332900 302960 439530 248480 267510 240190 384050 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 316180 563190 5395.6 589430 344300 279430 444440 242450 249190 246080 403050 294430 525610 30515 594830 332900 302960 439530 248480 267510 240190 384050 2 2 1 2 2 2 2 2 2 2 2 10342000 0 10342000 5309 1026 4952 28684 34284;34285 34285 2 FDSKDEILLTLEK Unmodified 1549.8239 0.8239397 1559 Q10713 PMPCA Mitochondrial-processing peptidase subunit alpha yes yes 0 0 0 1 By MS/MS 5.33 0.471 2 1 3 75.319 75.273 3 6.1287E-05 23866 20211116_3434_TMUAki_TMT10x_P_F6 97.631 67.943 3660200 5412300 46375 5327600 3838100 6773300 4316500 3476100 3044100 3321900 4363500 3408300 5049900 349170 5462700 3695000 6737000 4314000 3696000 3199400 3250700 4168400 1 1 1 1 1 1 1 1 1 1 1 3660200 5412300 46375 5327600 3838100 6773300 4316500 3476100 3044100 3321900 4363500 3408300 5049900 349170 5462700 3695000 6737000 4314000 3696000 3199400 3250700 4168400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 312330000 312330000 0 5310 1559 4953 28685;28686;28687 34286;34287;34288 34288 3 FDSPESHVGVAWR Unmodified 1485.7001 0.70007659 598 P35520;P0DN79;P35520-2 CBS Cystathionine beta-synthase yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 46.683 46.845 3 2.0629E-07 12261 20211116_3444_TMUAki_TMT10x_S_F5 120.6 102.24 10693000 16186000 145940 18525000 13835000 15202000 11483000 12433000 11841000 11052000 14347000 9957600 15112000 1061300 18684000 13215000 15629000 11782000 12739000 12120000 10850000 13762000 5 5 4 5 5 5 5 5 5 5 5 5170900 7334500 116310 8436300 8686200 10504000 6428700 5996100 5626300 5268900 6880800 4815500 6848000 586330 8559600 8279100 10472000 6614100 6302100 5803400 5175800 6598900 2 2 2 2 2 2 2 2 2 2 2 5522400 8851100 29636 10089000 5148600 4698300 5054600 6437000 6215200 5782700 7465900 5142100 8263600 475000 10124000 4935800 5157900 5167900 6437300 6316400 5674600 7163300 3 3 2 3 3 3 3 3 3 3 3 1061200000 741740000 319410000 5311 598 4954 28688;28689;28690;28691 34289;34290;34291;34292;34293 34292 5 FDTGNLCMVTGGANLGR Oxidation (M) 1797.8138 0.81380249 1362 P62701 RPS4X 40S ribosomal protein S4, X isoform yes yes 0 0 1 0 By MS/MS By MS/MS 6.71 1.03 2 4 4 4 7 7 58.069 58.305 2;3 6.9826E-15 18713 20211116_3435_TMUAki_TMT10x_P_F7 146.5 134.97 51918000 87506000 835320 89497000 65085000 84326000 56305000 72685000 67838000 67479000 71553000 48345000 81660000 5039800 91084000 62222000 85963000 57928000 74333000 68640000 66118000 68910000 17 17 8 17 17 17 17 17 17 17 17 22969000 37847000 541550 39217000 36868000 56871000 30263000 33777000 32242000 31245000 31869000 21389000 35321000 2456600 40175000 35208000 56329000 31104000 35431000 32701000 30620000 30754000 7 7 2 7 7 7 7 7 7 7 7 28949000 49659000 293780 50280000 28217000 27455000 26042000 38909000 35596000 36234000 39684000 26956000 46339000 2583200 50909000 27014000 29634000 26825000 38902000 35940000 35498000 38155000 10 10 6 10 10 10 10 10 10 10 10 16412000000 9054000000 7357500000 5312 1362 4955 28692;28693;28694;28695;28696;28697;28698;28699;28700;28701;28702;28703;28704;28705 34294;34295;34296;34297;34298;34299;34300;34301;34302;34303;34304;34305;34306;34307;34308;34309 34298 1826 16 FDTGNLCMVTGGANLGR Unmodified 1781.8189 0.81888787 1362 P62701 RPS4X 40S ribosomal protein S4, X isoform yes yes 0 0 0 0 By MS/MS By MS/MS 7.57 0.495 3 4 4 3 65.325 65.586 2;3 1.6397E-93 20415 20211116_3436_TMUAki_TMT10x_P_F8 346.75 317.01 53492000 88613000 486350 98698000 53976000 57765000 59733000 26796000 21683000 30463000 54869000 49805000 82723000 4305700 99364000 51891000 60676000 59111000 28917000 24901000 29601000 51903000 12 12 6 12 12 12 12 12 12 12 12 28052000 44764000 282880 48724000 30547000 42025000 35932000 16062000 13689000 17520000 28207000 26119000 41784000 2354400 49327000 29425000 42642000 35478000 17685000 15415000 17051000 26761000 8 8 4 8 8 8 8 8 8 8 8 25440000 43849000 203470 49974000 23429000 15740000 23801000 10734000 7993700 12943000 26662000 23686000 40938000 1951300 50037000 22466000 18034000 23634000 11232000 9486400 12550000 25142000 4 4 2 4 4 4 4 4 4 4 4 12305000000 6594300000 5711000000 5313 1362 4955 28706;28707;28708;28709;28710;28711;28712 34310;34311;34312;34313;34314;34315;34316;34317;34318;34319;34320;34321 34316 12 FDTQYPYGEKQDEFK Unmodified 1893.8421 0.84210896 858 P30040 ERP29 Endoplasmic reticulum resident protein 29 yes yes 0 0 0 1 By MS/MS By MS/MS 5.4 0.49 3 2 3 2 54.407 54.563 3 5.007E-07 15328 20211116_3434_TMUAki_TMT10x_P_F6 117.2 99.69 16134000 28515000 181710 29171000 32030000 33934000 21451000 19477000 28944000 21421000 24983000 15023000 26610000 1621800 29784000 30450000 33951000 22544000 20590000 28977000 20841000 24223000 4 4 2 4 4 4 4 4 4 4 4 8546500 14638000 103480 14789000 26642000 28673000 17620000 10434000 15588000 11165000 13115000 7958400 13659000 1049800 15284000 25325000 27944000 18281000 11551000 15859000 10874000 12728000 2 2 1 2 2 2 2 2 2 2 2 7587500 13877000 78239 14382000 5387800 5261100 3831500 9042500 13356000 10256000 11868000 7064500 12951000 571990 14500000 5125200 6007200 4262700 9039300 13118000 9966800 11495000 2 2 1 2 2 2 2 2 2 2 2 1984100000 1248800000 735310000 5314 858 4956 28713;28714;28715;28716;28717 34322;34323;34324;34325;34326;34327 34324 6 FDTTEGQENVIRIAK Unmodified 1719.8792 0.87916317 2239 Q8NDH2 CCDC168 Coiled-coil domain-containing protein 168 yes yes 0 0 0 1 By MS/MS 2 0 1 1 72.273 72.159 3 0.075579 23323 20211116_3440_TMUAki_TMT10x_S_F2 36.022 7.0456 2192300 3807200 50155 2922900 2729100 2648300 2342400 3008100 2805200 2816600 2855200 2041600 3549200 236020 3040200 2610100 2722900 2410500 3034500 2835300 2758700 2752800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2192300 3807200 50155 2922900 2729100 2648300 2342400 3008100 2805200 2816600 2855200 2041600 3549200 236020 3040200 2610100 2722900 2410500 3034500 2835300 2758700 2752800 1 1 1 1 1 1 1 1 1 1 1 173190000 0 173190000 5315 2239 4957 28718 34328 34328 1 FDVHDVTLHADAIHR Unmodified 1744.8645 0.86451616 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 By matching By MS/MS 4.33 0.471 2 1 1 2 43.303 43.448 5 0.00056793 10951 20211116_3444_TMUAki_TMT10x_S_F5 76.358 66.032 1248900 2223600 15212 2131600 1456800 923710 830080 1057900 941530 999630 1666100 1163000 2074500 120630 2163000 1382000 1018500 878210 1067100 978680 978700 1584800 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1248900 2223600 15212 2131600 1456800 923710 830080 1057900 941530 999630 1666100 1163000 2074500 120630 2163000 1382000 1018500 878210 1067100 978680 978700 1584800 3 3 3 3 3 3 3 3 3 3 3 291050000 89408000 201650000 5316 653 4958 28719;28720;28721 34329;34330;34331 34331 3 FDVNTSAVQVLIEHIGNLDR Unmodified 2239.1597 0.15969512 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.75 0.433 1 3 1 3 80.361 80.356 3 1.3706E-09 28448 20211116_3446_TMUAki_TMT10x_S_F7 106.49 87.17 1249200 2014700 62178 2193000 1237500 2442800 1575600 1402200 1148300 1187400 1441700 1163600 1880600 161350 2228300 1198900 2449700 1567300 1471700 1197300 1168500 1381700 1 1 1 1 1 1 1 1 1 1 1 1249200 2014700 62178 2193000 1237500 2442800 1575600 1402200 1148300 1187400 1441700 1163600 1880600 161350 2228300 1198900 2449700 1567300 1471700 1197300 1168500 1381700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 973030000 781790000 191250000 5317 1471 4959 28722;28723;28724;28725 34332;34333;34334 34333 3 FDVSGYPTLK Unmodified 1125.5706 0.57062555 654 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 By MS/MS By MS/MS 7.17 0.687 1 3 2 3 3 60.926 61.491 2;3 8.0349E-10 18181 20211116_3434_TMUAki_TMT10x_P_F6 166.19 0 22302000 35957000 0 42439000 32104000 34351000 22122000 31521000 33179000 28049000 31615000 20765000 33576000 1925500 42716000 30528000 35429000 23304000 32088000 33215000 27537000 30546000 3 3 0 3 3 3 3 3 3 3 3 9721500 16135000 0 18154000 20832000 24302000 13522000 13672000 14749000 12299000 13721000 9051600 15063000 959420 18469000 19790000 24139000 14136000 14396000 14915000 12069000 13268000 1 1 0 1 1 1 1 1 1 1 1 12580000 19822000 0 24285000 11272000 10049000 8600500 17849000 18430000 15750000 17894000 11713000 18513000 966060 24247000 10737000 11290000 9167800 17692000 18300000 15469000 17279000 2 2 0 2 2 2 2 2 2 2 2 2871200000 1663800000 1207300000 5318 654 4960 28726;28727;28728;28729;28730;28731 34335;34336;34337;34338;34339;34340 34335 6 FEAHPNDLYVEGLPENIPFR Unmodified 2356.1488 0.14879609 1428 P78347;P78347-2;P78347-4;P78347-3 GTF2I General transcription factor II-I yes no 0 0 0 0 By MS/MS By MS/MS 5 1.41 2 2 2 2 2 5 5 72.57 72.517 3 4.7279E-32 23566 20211116_3431_TMUAki_TMT10x_P_F4 181.34 153.73 51430000 89378000 1203500 83008000 56092000 78132000 60886000 53390000 48760000 54057000 63926000 47895000 83375000 5338000 85059000 53970000 79340000 61133000 55552000 50674000 52768000 61198000 19 19 16 19 19 19 19 19 19 19 19 26694000 45276000 863280 41964000 27410000 51095000 32074000 29396000 26504000 28576000 32640000 24861000 42235000 3027700 43181000 26451000 51002000 32118000 30958000 27425000 27943000 31297000 9 9 9 9 9 9 9 9 9 9 9 24736000 44101000 340250 41044000 28683000 27036000 28812000 23994000 22256000 25481000 31286000 23033000 41140000 2310300 41879000 27519000 28338000 29015000 24593000 23249000 24825000 29901000 10 10 7 10 10 10 10 10 10 10 10 15406000000 6093000000 9312800000 5319 1428 4961 28732;28733;28734;28735;28736;28737;28738;28739;28740;28741 34341;34342;34343;34344;34345;34346;34347;34348;34349;34350;34351;34352;34353;34354;34355;34356;34357;34358;34359;34360 34343 20 FEDENFILK Unmodified 1153.5655 0.56554017 1385 P62937;P62937-2 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 3.48 1.6 2 6 14 4 2 2 3 22 11 75.565 75.428 2;3 1.1481E-07 24512 20211116_3441_TMUAki_TMT10x_S_F3 209.19 165.49 250710000 373460000 2297800 509940000 215470000 239420000 218260000 172860000 197460000 190170000 267810000 233440000 348990000 20830000 506530000 206710000 259100000 220600000 179630000 204290000 185020000 256170000 23 23 10 23 23 23 23 23 23 23 23 96493000 135890000 339920 185300000 120230000 138260000 93785000 66556000 76536000 70794000 98802000 89842000 126990000 7998300 184850000 114600000 142140000 95979000 71415000 79407000 68966000 94622000 14 14 6 14 14 14 14 14 14 14 14 154220000 237570000 1957800 324630000 95240000 101160000 124470000 106300000 120930000 119380000 169000000 143600000 222000000 12831000 321690000 92112000 116960000 124620000 108210000 124890000 116050000 161540000 9 9 4 9 9 9 9 9 9 9 9 40944000000 21321000000 19623000000 5320 1385 4962 28742;28743;28744;28745;28746;28747;28748;28749;28750;28751;28752;28753;28754;28755;28756;28757;28758;28759;28760;28761;28762;28763;28764;28765;28766;28767;28768;28769;28770;28771;28772;28773;28774 34361;34362;34363;34364;34365;34366;34367;34368;34369;34370;34371;34372;34373;34374;34375;34376;34377;34378;34379;34380;34381;34382;34383;34384;34385;34386;34387;34388;34389;34390;34391;34392;34393;34394;34395 34386 35 FEDPKFEVIEKPQA Unmodified 1675.8457 0.84573777 725 P18859;P18859-2 ATP5J ATP synthase-coupling factor 6, mitochondrial yes no 0 0 0 2 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 61.275 61.322 3 1.0409E-06 18061 20211116_3434_TMUAki_TMT10x_P_F6 119.47 101.67 74433000 123610000 803830 134450000 90012000 111520000 78537000 83467000 83685000 80507000 97345000 69308000 115380000 6895700 136060000 86052000 114390000 80423000 86191000 85395000 78750000 93482000 9 9 5 9 9 9 9 9 9 9 9 37871000 60314000 266970 67420000 58129000 77650000 46087000 42761000 43057000 40360000 47790000 35262000 56306000 3507900 68430000 55440000 77690000 47284000 45165000 44103000 39517000 45955000 5 5 3 5 5 5 5 5 5 5 5 36562000 63297000 536870 67033000 31882000 33869000 32450000 40707000 40628000 40147000 49555000 34046000 59077000 3387900 67625000 30612000 36703000 33139000 41026000 41291000 39233000 47527000 4 4 2 4 4 4 4 4 4 4 4 5039200000 2681000000 2358200000 5321 725 4963 28775;28776;28777;28778;28779;28780 34396;34397;34398;34399;34400;34401;34402;34403;34404 34400 9 FEDPRDAEDAIYGR Unmodified 1652.7431 0.74306362 1611 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 1.02 2 3 3 2 5 5 52.394 52.237 2;3 1.3612E-21 18038 20211116_3441_TMUAki_TMT10x_S_F3 190.53 181.63 40227000 67085000 209370 71901000 60940000 70902000 46383000 60091000 58708000 53491000 58512000 37456000 62616000 3695300 72996000 58071000 72049000 48191000 61444000 59179000 52514000 56450000 14 14 7 14 14 14 14 14 14 14 14 20898000 33352000 85125 36916000 42088000 53714000 30801000 31847000 31150000 27835000 30731000 19458000 31134000 2052400 37660000 40073000 53193000 31843000 33363000 31659000 27351000 29658000 6 6 3 6 6 6 6 6 6 6 6 19329000 33734000 124240 34985000 18853000 17188000 15583000 28244000 27558000 25656000 27780000 17998000 31482000 1642900 35336000 17998000 18856000 16348000 28081000 27519000 25163000 26792000 8 8 4 8 8 8 8 8 8 8 8 7099700000 4176600000 2923200000 5322 1611 4964 28781;28782;28783;28784;28785;28786;28787;28788;28789;28790 34405;34406;34407;34408;34409;34410;34411;34412;34413;34414;34415;34416;34417;34418 34417 14 FEEDLLLLEDQNSK Unmodified 1691.8254 0.82539626 2078 Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-5;Q7Z406-4 MYH14 Myosin-14 yes no 0 0 0 0 By MS/MS 1 0 1 1 75.945 75.869 3 0.017957 26543 20211116_3439_TMUAki_TMT10x_S_F1 51.546 33.182 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5323 2078 4965 28791 34419 34419 1 FEEEIKAEQEER Unmodified 1535.7104 0.71036651 2421 Q96C19 EFHD2 EF-hand domain-containing protein D2 yes yes 0 0 0 1 By matching By MS/MS 2 0.816 1 1 1 1 2 42.908 42.812 3 0.00010243 11303 20211116_3440_TMUAki_TMT10x_S_F2 95.981 78.019 1058100 1699500 5090.5 1808900 964530 991790 989640 1155900 1254800 1114500 1430200 985230 1586200 91157 1825400 925780 1064500 1010700 1165800 1271200 1090200 1374200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1058100 1699500 5090.5 1808900 964530 991790 989640 1155900 1254800 1114500 1430200 985230 1586200 91157 1825400 925780 1064500 1010700 1165800 1271200 1090200 1374200 1 1 1 1 1 1 1 1 1 1 1 215610000 141200000 74404000 5324 2421 4966 28792;28793;28794 34420 34420 1 FEELCSDLFR Unmodified 1314.5914 0.59143734 596;701 P0DMV8;P0DMV9;P0DMV8-2;P17066;P48741 HSPA1A;HSPA1B;HSPA6;HSPA7 Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 no no 0 0 0 0 By MS/MS By MS/MS 2.75 0.829 2 1 1 2 2 74.85 74.732 2 7.999E-09 24896 20211116_3442_TMUAki_TMT10x_S_F4 143.04 118.14 13216000 20693000 52465 21390000 14912000 19810000 15691000 13158000 13031000 14721000 17070000 12305000 19312000 1069000 21748000 14314000 20129000 15793000 13761000 13516000 14313000 16341000 4 4 1 4 4 4 4 4 4 4 4 7871000 11729000 0 12241000 8348000 14185000 9130300 8291100 8121000 8513400 10090000 7328200 10946000 605530 12481000 8020600 14199000 9189100 8734000 8375800 8305500 9672700 2 2 0 2 2 2 2 2 2 2 2 5344600 8964100 52465 9149000 6563700 5625000 6560300 4867100 4909800 6207300 6979300 4976400 8365200 463460 9267700 6293800 5930700 6603500 5026900 5140500 6007200 6668600 2 2 1 2 2 2 2 2 2 2 2 1334100000 1110500000 223610000 5325 596;701 4967 28795;28796;28797;28798 34421;34422;34423 34423 3 FEELNADLFR Unmodified 1252.6088 0.60880197 615 P11142;P11142-2;P54652 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 1.71 2 2 2 2 2 2 5 7 72.377 72.278 2 6.8543E-15 23336 20211116_3440_TMUAki_TMT10x_S_F2 236.56 160.7 118390000 195610000 1225100 183710000 134300000 183620000 146920000 126660000 119520000 124370000 153610000 110240000 182480000 10588000 188260000 129130000 185780000 147520000 131590000 124000000 121560000 147130000 14 14 7 14 14 14 14 14 14 14 14 64871000 105210000 896860 98919000 67385000 118230000 80226000 70197000 65459000 66625000 83677000 60404000 98147000 5755200 101650000 64957000 118170000 80248000 73689000 67886000 65217000 80156000 8 8 4 8 8 8 8 8 8 8 8 53523000 90402000 328200 84794000 66914000 65388000 66692000 56466000 54061000 57746000 69936000 49837000 84334000 4832700 86610000 64168000 67610000 67269000 57900000 56114000 56345000 66973000 6 6 3 6 6 6 6 6 6 6 6 22950000000 11960000000 10990000000 5326 615 4968 28799;28800;28801;28802;28803;28804;28805;28806;28807;28808;28809;28810 34424;34425;34426;34427;34428;34429;34430;34431;34432;34433;34434;34435;34436;34437;34438 34433 15 FEEPAPLSYDSRPR Unmodified 1662.8002 0.80018457 1537 Q07157;Q07157-2 TJP1 Tight junction protein ZO-1 yes no 0 0 0 1 By MS/MS By matching 4.5 0.5 1 1 1 1 44.867 44.995 3 1.5495E-06 12365 20211116_3431_TMUAki_TMT10x_P_F4 115.06 93.224 2048100 3196700 0 3626500 4181500 4401800 2717700 2401000 2365100 2172200 2589900 1907000 2984500 198560 3680900 3972600 4391400 2822300 2535300 2429500 2130900 2491400 1 1 0 1 1 1 1 1 1 1 1 2048100 3196700 0 3626500 4181500 4401800 2717700 2401000 2365100 2172200 2589900 1907000 2984500 198560 3680900 3972600 4391400 2822300 2535300 2429500 2130900 2491400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 259980000 200460000 59518000 5327 1537 4969 28811;28812 34439 34439 1 FEGEPATHTQPGVQLQSNTYDLQESNVR Unmodified 3144.4748 0.47483427 1681 Q14141;Q14141-2;Q14141-4;Q14141-3 SEPT6 Septin-6 yes no 0 0 0 0 By MS/MS 4 0 1 1 50.464 50.626 4 0.0040748 14694 20211116_3431_TMUAki_TMT10x_P_F4 45.125 37.679 1115600 2296400 17740 2333600 2159000 3262000 1583300 1550800 1542500 1458200 1712500 1038900 2142900 123640 2391900 2056700 3227400 1634800 1660300 1577000 1428000 1646700 1 1 1 1 1 1 1 1 1 1 1 1115600 2296400 17740 2333600 2159000 3262000 1583300 1550800 1542500 1458200 1712500 1038900 2142900 123640 2391900 2056700 3227400 1634800 1660300 1577000 1428000 1646700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 185200000 185200000 0 5328 1681 4970 28813 34440 34440 1 FEGKPLLQR Unmodified 1086.6186 0.61857879 2798 Q9H3K6;Q9H3K6-2 BOLA2 BolA-like protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 4.33 3.04 2 1 2 1 2 4 42.507 42.664 3 0.0005891 13059 20211116_3439_TMUAki_TMT10x_S_F1 102.55 54.577 16303000 24622000 149370 29814000 30148000 23865000 18330000 16764000 15789000 14654000 22139000 15181000 22994000 1625600 29959000 28615000 24520000 19132000 17340000 16399000 14399000 21160000 6 6 5 6 6 6 6 6 6 6 6 9023500 12641000 55279 16446000 23450000 18512000 12135000 8615400 7985400 7433500 11761000 8401700 11809000 942500 16540000 22200000 18509000 12772000 9223700 8439400 7308600 11228000 2 2 1 2 2 2 2 2 2 2 2 7279900 11981000 94089 13368000 6697900 5353500 6195100 8148800 7803900 7221000 10378000 6779000 11185000 683090 13420000 6415300 6010900 6360100 8116300 7960100 7090600 9931600 4 4 4 4 4 4 4 4 4 4 4 795990000 406220000 389770000 5329 2798 4971 28814;28815;28816;28817;28818;28819 34441;34442;34443 34442 3 FEHCNFNDVTTR Unmodified 1538.6572 0.6572255 663 P13987;P13987-2 CD59 CD59 glycoprotein yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 36.932 36.988 3 3.075E-06 9235 20211116_3431_TMUAki_TMT10x_P_F4 112.44 99.237 3498500 5881600 27796 7287900 6719300 5560300 3894000 3746200 3410700 3239500 4542200 3257700 5493400 243150 7309700 6373400 5730300 4082600 3885300 3531100 3184800 4346700 3 3 2 3 3 3 3 3 3 3 3 2126800 3281700 27796 3830100 5048700 4759000 2885900 2758700 2439000 2047400 2778500 1980500 3064200 243150 3882500 4788200 4745900 3026500 2884500 2512900 2028900 2669800 2 2 2 2 2 2 2 2 2 2 2 1371800 2600000 0 3457800 1670600 801350 1008100 987480 971680 1192100 1763800 1277200 2429200 0 3427300 1585200 984410 1056100 1000700 1018200 1155900 1676900 1 1 0 1 1 1 1 1 1 1 1 223210000 189840000 33374000 5330 663 4972 28820;28821;28822 34444;34445 34445 2 FEIGEGENLDLPYGLER Unmodified 1949.9371 0.93707198 1497 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 2.33 1.07 4 5 3 3 8 7 77.685 77.639 2;3 2.0227E-69 27248 20211116_3439_TMUAki_TMT10x_S_F1 303.02 261.62 77852000 131280000 399100 120900000 77252000 95569000 88495000 53201000 49078000 62572000 89256000 72486000 122460000 6215200 123690000 74340000 97969000 87957000 56510000 53079000 60725000 84858000 12 12 5 12 12 12 12 12 12 12 12 32901000 54648000 335610 50328000 33128000 54731000 39130000 25227000 25155000 30931000 39990000 30635000 50976000 2837100 51714000 31923000 54821000 38945000 27309000 26729000 29974000 38118000 6 6 3 6 6 6 6 6 6 6 6 44951000 76633000 63490 70571000 44124000 40838000 49365000 27974000 23923000 31642000 49265000 41851000 71484000 3378100 71978000 42418000 43148000 49012000 29201000 26350000 30752000 46740000 6 6 2 6 6 6 6 6 6 6 6 16530000000 8281800000 8248300000 5331 1497 4973 28823;28824;28825;28826;28827;28828;28829;28830;28831;28832;28833;28834;28835;28836;28837 34446;34447;34448;34449;34450;34451;34452;34453;34454;34455;34456;34457;34458;34459 34454 14 FEIPYFTTSGIQVR Unmodified 1656.8512 0.8511575 2717 Q9BXS5;Q9BXS5-2 AP1M1 AP-1 complex subunit mu-1 yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 78.597 78.578 2 0.00022309 27159 20211116_3429_TMUAki_TMT10x_P_F2 90.653 62.479 16200000 29090000 157290 26639000 18819000 27308000 20358000 17873000 17051000 18565000 22550000 15084000 27135000 1386200 27359000 18084000 27566000 20467000 18669000 17686000 18103000 21583000 2 2 1 2 2 2 2 2 2 2 2 11241000 18922000 0 18139000 11532000 20241000 13249000 11998000 11197000 12499000 14926000 10465000 17653000 795890 18592000 11091000 20305000 13286000 12629000 11613000 12186000 14283000 1 1 0 1 1 1 1 1 1 1 1 4959300 10168000 157290 8499700 7287200 7066900 7108800 5875500 5853700 6066300 7623700 4618800 9481800 590350 8767500 6992400 7260900 7181300 6039600 6072800 5916800 7299500 1 1 1 1 1 1 1 1 1 1 1 2194900000 1384000000 810870000 5332 2717 4974 28838;28839;28840 34460;34461 34460 2 FELAVDAVHR Unmodified 1155.6037 0.60365701 2315 Q8WWM7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7-3;Q8WWM7-7 ATXN2L Ataxin-2-like protein yes no 0 0 0 0 By MS/MS 5 0 1 1 48.87 49.05 3 0.00017714 13144 20211116_3444_TMUAki_TMT10x_S_F5 107.58 82.724 981330 1477400 6080.7 1611400 1017800 791400 959950 1326500 1277100 1012800 1309300 913760 1379100 87537 1622200 974860 868830 986560 1312300 1286500 1002100 1262000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 981330 1477400 6080.7 1611400 1017800 791400 959950 1326500 1277100 1012800 1309300 913760 1379100 87537 1622200 974860 868830 986560 1312300 1286500 1002100 1262000 1 1 1 1 1 1 1 1 1 1 1 298740000 0 298740000 5333 2315 4975 28841 34462 34462 1 FELAVDAVHRK Unmodified 1283.6986 0.69862003 2315 Q8WWM7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7-3;Q8WWM7-7 ATXN2L Ataxin-2-like protein yes no 0 0 0 1 By MS/MS 7 0 1 1 44.801 45.325 4 9.5604E-07 13923 20211116_3446_TMUAki_TMT10x_S_F7 128.17 102.23 1044300 1750900 2396.1 1780200 867540 911770 1263600 1056200 1070300 1129000 1297600 972360 1633900 86337 1801100 841940 985670 1255100 1068800 1105400 1099600 1244700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1044300 1750900 2396.1 1780200 867540 911770 1263600 1056200 1070300 1129000 1297600 972360 1633900 86337 1801100 841940 985670 1255100 1068800 1105400 1099600 1244700 1 1 1 1 1 1 1 1 1 1 1 238180000 0 238180000 5334 2315 4976 28842 34463 34463 1 FELLTNFPR Unmodified 1135.6026 0.60259438 391 O94888 UBXN7 UBX domain-containing protein 7 yes yes 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 74.156 74.08 2 6.0988E-06 25368 20211116_3429_TMUAki_TMT10x_P_F2 161.92 89.041 12920000 21995000 54884 21393000 14741000 21621000 17061000 13470000 13619000 15085000 17350000 12030000 20522000 1131200 21870000 14195000 21829000 17078000 14155000 14138000 14666000 16621000 4 4 3 4 4 4 4 4 4 4 4 6807700 11262000 12940 11169000 7660800 13883000 8828400 7055400 7248400 7841300 8923700 6338600 10508000 571790 11441000 7374600 13822000 8845000 7541600 7502600 7625900 8556500 2 2 1 2 2 2 2 2 2 2 2 6112400 10733000 41944 10224000 7079900 7738200 8232900 6414300 6370600 7243200 8426300 5691500 10013000 559400 10429000 6820000 8006800 8233100 6613300 6635400 7039900 8064900 2 2 2 2 2 2 2 2 2 2 2 1422500000 806000000 616530000 5335 391 4977 28843;28844;28845;28846 34464;34465;34466;34467 34465 4 FELQHGTEEQQEEVR Unmodified 1857.8493 0.8493196 395 O94906;O94906-2 PRPF6 Pre-mRNA-processing factor 6 yes no 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 35.821 35.708 3 5.4794E-34 8257 20211116_3428_TMUAki_TMT10x_P_F1 231.71 215.91 511230 785230 4112.3 989150 1544200 1366100 723740 728690 839100 567150 834090 476030 733470 60153 1000300 1460300 1354100 780590 768220 848410 560560 804770 2 2 1 2 2 2 2 2 2 2 2 511230 785230 4112.3 989150 1544200 1366100 723740 728690 839100 567150 834090 476030 733470 60153 1000300 1460300 1354100 780590 768220 848410 560560 804770 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 82110000 82110000 0 5336 395 4978 28847;28848;28849;28850 34468;34469;34470;34471 34468 4 FELSCYSLAPQIK Unmodified 1554.7752 0.77521537 476 P00966 ASS1 Argininosuccinate synthase yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 3.33 4 1 4 5 4 74.197 74.146 2;3 9.1094E-19 24011 20211116_3436_TMUAki_TMT10x_P_F8 182.28 152.81 29819000 51358000 691930 46577000 43896000 66129000 45336000 43976000 40504000 44260000 45116000 27769000 47905000 3280000 48146000 42166000 65664000 45761000 45838000 41581000 43215000 43379000 9 9 8 9 9 9 9 9 9 9 9 17442000 29621000 396840 27087000 27224000 50360000 28844000 26357000 24322000 27161000 26176000 16243000 27631000 1918600 28160000 26166000 49329000 29033000 28033000 25007000 26494000 25194000 5 5 4 5 5 5 5 5 5 5 5 12377000 21737000 295090 19490000 16673000 15769000 16492000 17619000 16182000 17099000 18940000 11526000 20274000 1361300 19986000 16000000 16335000 16729000 17805000 16574000 16721000 18186000 4 4 4 4 4 4 4 4 4 4 4 5953800000 3682800000 2271100000 5337 476 4979 28851;28852;28853;28854;28855;28856;28857;28858;28859 34472;34473;34474;34475;34476;34477;34478;34479;34480;34481 34476 10 FELSENCSERPGLR Unmodified 1692.789 0.78896795 1694 Q14203;Q14203-6;Q14203-3;Q14203-4;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 40.407 40.516 3 5.5516E-30 11107 20211116_3442_TMUAki_TMT10x_S_F4 213.99 168.63 8873600 13931000 93473 21071000 25426000 16798000 10896000 9559900 10991000 9236400 12816000 8262200 13026000 969580 20928000 24014000 17213000 11815000 10075000 11242000 9034100 12306000 8 8 7 8 8 8 8 8 8 8 8 6950500 10634000 76484 16291000 24074000 15337000 9373500 7403400 8669800 7262100 9946400 6471500 9943900 802310 16206000 22712000 15505000 10255000 7923400 8896100 7098400 9555400 6 6 5 6 6 6 6 6 6 6 6 1923100 3297000 16989 4779600 1352100 1460400 1522500 2156500 2321100 1974300 2869300 1790700 3082000 167270 4721600 1301700 1708100 1560200 2152000 2345800 1935700 2750900 2 2 2 2 2 2 2 2 2 2 2 849930000 623230000 226700000 5338 1694 4980 28860;28861;28862;28863 34482;34483;34484;34485;34486;34487;34488;34489;34490 34490 9 FELYFQGPSSNKPR Unmodified 1668.826 0.82600539 913 P33993;P33993-2 MCM7 DNA replication licensing factor MCM7 yes no 0 0 0 1 By MS/MS 3 0 1 1 57.127 56.725 3 3.9217E-05 19918 20211116_3441_TMUAki_TMT10x_S_F3 98.654 80.058 1711700 3120700 53880 3075500 1990700 1836800 1722800 2155300 2093800 2213300 2381500 1594200 2911800 196030 3122200 1905300 1954800 1773000 2177100 2124100 2159200 2288400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1711700 3120700 53880 3075500 1990700 1836800 1722800 2155300 2093800 2213300 2381500 1594200 2911800 196030 3122200 1905300 1954800 1773000 2177100 2124100 2159200 2288400 1 1 1 1 1 1 1 1 1 1 1 134100000 0 134100000 5339 913 4981 28864 34491 34491 1 FENAFLSHVVSQHQALLGTIR Unmodified 2366.2495 0.24951318 805 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 69.866 69.838 4 1.7516E-19 23055 20211116_3442_TMUAki_TMT10x_S_F4 152.88 133.81 7919100 12668000 174530 12914000 7917600 11233000 8656900 7094200 6539000 7645700 9030900 7374600 11822000 800690 13132000 7619800 11454000 8676800 7438200 6833400 7444400 8634600 4 4 3 4 4 4 4 4 4 4 4 5146000 7963700 99949 8189800 4679500 8362500 5453700 3982700 3637100 4410600 5314200 4792000 7431900 494770 8341600 4511200 8410100 5435200 4283200 3839200 4290000 5074500 2 2 1 2 2 2 2 2 2 2 2 2773100 4704400 74578 4724600 3238200 2870000 3203200 3111500 2901800 3235000 3716700 2582600 4389700 305930 4790700 3108600 3043600 3241600 3155000 2994200 3154400 3560200 2 2 2 2 2 2 2 2 2 2 2 2458200000 1204200000 1254000000 5340 805 4982 28865;28866;28867 34492;34493;34494;34495 34495 4 FENVNGYTNCCFGFHR Unmodified 2020.8308 0.83084954 554 P08243;P08243-2 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes no 0 0 0 0 By MS/MS 8 0 1 1 54.309 54.426 3 4.0519E-29 15924 20211116_3436_TMUAki_TMT10x_P_F8 187.16 181.62 4307000 7044500 0 7121600 8038400 12513000 6980700 7360900 6426500 5918600 6575700 4010200 6573600 0 7340400 7681000 12299000 7119000 7700900 6567400 5839800 6338700 2 2 0 2 2 2 2 2 2 2 2 4307000 7044500 0 7121600 8038400 12513000 6980700 7360900 6426500 5918600 6575700 4010200 6573600 0 7340400 7681000 12299000 7119000 7700900 6567400 5839800 6338700 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 553550000 553550000 0 5341 554 4983 28868 34496;34497 34497 2 FEPIHGNFLLTGAYDNTAK Unmodified 2107.0375 0.037454724 200 O43172;O43172-2 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 67.56 67.778 3 3.4285E-06 23083 20211116_3446_TMUAki_TMT10x_S_F7 88.176 64.729 39418000 62865000 383870 57546000 45643000 68705000 46098000 50080000 45555000 45845000 48657000 36703000 58640000 3523100 59249000 43787000 68885000 46718000 51731000 46478000 44949000 46842000 5 5 3 5 5 5 5 5 5 5 5 25492000 39092000 241060 36292000 28704000 52744000 29530000 32086000 30047000 29598000 29431000 23736000 36466000 2203200 37467000 27546000 52253000 29926000 33591000 30523000 29009000 28410000 3 3 2 3 3 3 3 3 3 3 3 13926000 23773000 142810 21255000 16939000 15961000 16568000 17994000 15508000 16247000 19226000 12967000 22173000 1319800 21782000 16241000 16633000 16792000 18140000 15955000 15940000 18431000 2 2 1 2 2 2 2 2 2 2 2 5829600000 2729600000 3100000000 5342 200 4984 28869;28870;28871;28872 34498;34499;34500;34501;34502 34501 5 FEPYANPTKR Unmodified 1221.6142 0.6142217 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 1 By MS/MS By MS/MS 8 0 3 2 1 34.79 35.084 3 0.0007393 8398 20211116_3436_TMUAki_TMT10x_P_F8 81.09 63.054 111050 178530 743.34 199200 298270 256990 149560 138860 155350 122600 169860 103400 166660 12522 202620 282300 255590 159660 146660 158300 120400 163410 1 1 1 1 1 1 1 1 1 1 1 111050 178530 743.34 199200 298270 256990 149560 138860 155350 122600 169860 103400 166660 12522 202620 282300 255590 159660 146660 158300 120400 163410 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9236300 9236300 0 5343 1171 4985 28873;28874;28875 34503;34504;34505 34504 3 FEQAFYTYDTSSPSILTLTAIR Unmodified 2523.2533 0.25332074 1422 Q5JPE7;Q15155;P69849;Q5JPE7-2;Q5JPE7-3 NOMO2;NOMO1;NOMO3 Nodal modulator 2;Nodal modulator 1;Nodal modulator 3 yes no 0 0 0 0 By MS/MS 8 0 1 1 80.329 80.315 3 0.0045872 25925 20211116_3447_TMUAki_TMT10x_S_F8 50.77 40.982 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5344 1422 4986 28876 34506 34506 1 FERPDGSHFDVR Unmodified 1460.6797 0.6796755 3248 Q9Y2S7 POLDIP2 Polymerase delta-interacting protein 2 yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.024 35.078 4 0.0011897 8784 20211116_3433_TMUAki_TMT10x_P_F5 78.814 67.021 1187000 1787200 26945 2233300 2432900 2085600 1531300 1556900 1526400 1329400 1669900 1105400 1669300 140970 2244600 2311800 2121900 1600200 1602900 1558200 1307700 1606500 3 3 3 3 3 3 3 3 3 3 3 871450 1317100 21426 1628100 2169100 1825000 1207600 1162300 1161000 984950 1226000 811560 1230200 110390 1641900 2056900 1832200 1273700 1209900 1185500 969260 1180600 2 2 2 2 2 2 2 2 2 2 2 315540 470090 5519.2 605270 263860 260510 323690 394680 365450 344450 443980 293840 439150 30580 602780 254840 289670 326500 393010 372750 338480 425860 1 1 1 1 1 1 1 1 1 1 1 115710000 92579000 23134000 5345 3248 4987 28877;28878;28879 34507;34508;34509 34508 3 FESPEVAER Unmodified 1062.4982 0.49818889 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS By MS/MS 2.4 1.02 1 2 1 1 2 3 37.136 37.078 2 3.4866E-05 10511 20211116_3429_TMUAki_TMT10x_P_F2 153.08 114.92 7081500 11557000 91598 13529000 13184000 9753000 8734200 7900700 8049600 6576000 10803000 6594100 10791000 731530 13606000 12534000 10127000 9070900 8086700 8316700 6477000 10336000 7 7 4 7 7 7 7 7 7 7 7 3134700 4615600 51717 5726500 9325000 6146200 3963400 3305100 2981300 2430300 4164800 2918900 4311000 373400 5769700 8808200 6171600 4270200 3477600 3118000 2409600 3981000 2 2 1 2 2 2 2 2 2 2 2 3946800 6941100 39881 7803000 3859400 3606800 4770700 4595600 5068200 4145700 6638300 3675200 6480000 358140 7836700 3725600 3955400 4800700 4609100 5198800 4067400 6355100 5 5 3 5 5 5 5 5 5 5 5 339790000 238870000 100920000 5346 1171 4988 28880;28881;28882;28883;28884 34510;34511;34512;34513;34514;34515;34516 34511 7 FETFCLDPSLVTK Unmodified 1555.7592 0.75923095 3116 Q9UHB9;Q9UHB9-4;Q9UHB9-2;Q9UHB9-3 SRP68 Signal recognition particle subunit SRP68 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 78.052 78.08 3 6.352E-06 25293 20211116_3445_TMUAki_TMT10x_S_F6 96.059 68.09 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5347 3116 4989 28885;28886 34517;34518 34518 2 FFCFQVLEHQVK Unmodified 1580.781 0.78096945 223 O43592 XPOT Exportin-T yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 69.855 69.621 3 2.9513E-05 23615 20211116_3429_TMUAki_TMT10x_P_F2 88.187 64.96 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5348 223 4990 28887;28888 34519;34520 34519 2 FFDANYDGK Unmodified 1075.4611 0.4610751 1824 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 no no 0 0 0 0 By MS/MS 4 0 1 1 57.548 57.475 2 0.044763 17913 20211116_3442_TMUAki_TMT10x_S_F4 63.184 41.036 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5349 1824 4991 28889 34521 34521 1 FFDANYDGKDYDPVAAR Unmodified 1962.8748 0.87480607 1824 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.83 1.34 1 2 1 1 1 2 4 60.683 60.739 3 1.2974E-05 17900 20211116_3444_TMUAki_TMT10x_S_F5 94.387 83.753 75055000 140290000 2834100 111980000 102890000 165580000 99937000 147320000 156810000 147040000 124570000 69903000 130800000 9034400 117040000 98743000 164970000 103290000 150690000 155890000 143620000 121170000 6 6 5 6 6 6 6 6 6 6 6 30433000 57144000 141820 39202000 54241000 108680000 58777000 66131000 70976000 62626000 52191000 28335000 53254000 2769400 42299000 52118000 105470000 59761000 69280000 71006000 61308000 50929000 3 3 2 3 3 3 3 3 3 3 3 44622000 83145000 2692200 72776000 48653000 56901000 41160000 81185000 85830000 84418000 72379000 41567000 77545000 6265000 74738000 46625000 59492000 43525000 81415000 84885000 82314000 70238000 3 3 3 3 3 3 3 3 3 3 3 7722000000 2703100000 5018900000 5350 1824 4992 28890;28891;28892;28893;28894;28895 34522;34523;34524;34525;34526 34526 5 FFDDPMLLELAK Unmodified 1437.7214 0.72138888 1757 Q15029;Q15029-2;Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 By MS/MS By MS/MS 4.6 1.54 2 2 3 2 5 1 10 5 80.845 80.84 2;3 5.1603E-07 27436 20211116_3442_TMUAki_TMT10x_S_F4 127.42 108.64 17960000 27052000 244060 28129000 18393000 18932000 22037000 8829200 8294100 10334000 18065000 16723000 25246000 1578300 28483000 17733000 19627000 21737000 9531900 9385900 10031000 17124000 7 7 5 7 7 7 7 7 7 7 7 8083400 11443000 170820 12070000 7034000 10367000 9466400 4024500 3805000 4467200 7993100 7527000 10680000 732700 12244000 6810700 10524000 9299800 4425200 4267300 4344700 7581000 3 3 2 3 3 3 3 3 3 3 3 9876400 15609000 73243 16059000 11359000 8565500 12570000 4804700 4489100 5866900 10072000 9196000 14566000 845570 16239000 10922000 9103700 12437000 5106700 5118700 5686100 9543400 4 4 3 4 4 4 4 4 4 4 4 2706200000 1645300000 1060900000 5351 1757 4993 28896;28897;28898;28899;28900;28901;28902;28903;28904;28905;28906;28907;28908;28909;28910 34527;34528;34529;34530;34531;34532;34533;34534;34535;34536 34534 10 FFDDPMLLELAK Oxidation (M) 1453.7163 0.71630351 1757 Q15029;Q15029-2;Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 1 0 By MS/MS By MS/MS 4.62 1.21 1 1 4 3 4 6 7 79.424 79.417 2;3 1.7788E-05 28970 20211116_3441_TMUAki_TMT10x_S_F3 107.55 91.664 26892000 47018000 244430 39826000 34151000 41556000 36903000 33056000 35099000 35557000 37299000 25040000 43846000 2480700 41163000 32824000 42037000 37232000 34113000 35865000 34623000 35913000 9 9 6 9 9 9 9 9 9 9 9 7767900 12465000 64765 11672000 7517600 14595000 8978200 8656400 9259600 9085800 10318000 7232800 11628000 665090 12007000 7246600 14554000 9039300 9113800 9445300 8856000 9920400 3 3 2 3 3 3 3 3 3 3 3 19124000 34552000 179670 28154000 26633000 26961000 27924000 24400000 25840000 26471000 26981000 17808000 32217000 1815600 29156000 25578000 27482000 28193000 24999000 26419000 25767000 25992000 6 6 4 6 6 6 6 6 6 6 6 6693700000 2800800000 3892900000 5352 1757 4993 28911;28912;28913;28914;28915;28916;28917;28918;28919;28920;28921;28922;28923 34537;34538;34539;34540;34541;34542;34543;34544;34545;34546 34541 2371 10 FFDEESYSLLR Unmodified 1404.6561 0.65614609 1156 P51571 SSR4 Translocon-associated protein subunit delta yes yes 0 0 0 0 By MS/MS By MS/MS 3.73 1.6 1 2 2 2 2 2 5 6 75.145 75.085 2 7.9359E-30 25080 20211116_3442_TMUAki_TMT10x_S_F4 266.91 223.1 91374000 157170000 392040 137180000 102410000 136900000 107790000 79980000 79432000 84085000 109250000 85079000 146580000 7869300 141350000 98336000 138200000 108180000 84314000 83107000 81953000 104460000 15 15 7 15 15 15 15 15 15 15 15 51704000 89565000 347830 75694000 47343000 87506000 54207000 44679000 45067000 47540000 60047000 48144000 83522000 4471000 78377000 45583000 87454000 54342000 47673000 46780000 46313000 57461000 8 8 5 8 8 8 8 8 8 8 8 39669000 67603000 44217 61485000 55063000 49395000 53583000 35302000 34365000 36545000 49199000 36935000 63058000 3398300 62976000 52753000 50750000 53834000 36641000 36327000 35640000 47002000 7 7 2 7 7 7 7 7 7 7 7 9582300000 4097000000 5485400000 5353 1156 4994 28924;28925;28926;28927;28928;28929;28930;28931;28932;28933;28934 34547;34548;34549;34550;34551;34552;34553;34554;34555;34556;34557;34558;34559;34560;34561;34562 34561 16 FFDEESYSLLRK Unmodified 1532.7511 0.75110911 1156 P51571 SSR4 Translocon-associated protein subunit delta yes yes 0 0 0 1 By MS/MS By MS/MS 6.75 0.433 1 3 2 2 65.945 66.242 3 2.4308E-15 22510 20211116_3446_TMUAki_TMT10x_S_F7 159.01 126.52 6722300 11878000 18924 12059000 7779700 11754000 7044600 5623700 6129800 6463800 7768700 6259300 11084000 589770 12285000 7442200 11855000 7155700 6052300 6334200 6278300 7443400 1 1 1 1 1 1 1 1 1 1 1 6722300 11878000 18924 12059000 7779700 11754000 7044600 5623700 6129800 6463800 7768700 6259300 11084000 589770 12285000 7442200 11855000 7155700 6052300 6334200 6278300 7443400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1116500000 1116500000 0 5354 1156 4995 28935;28936;28937;28938 34563;34564;34565 34565 3 FFDHSGTLVMDAYEPEISR Oxidation (M) 2229.0048 0.0048339665 1748 Q15005 SPCS2 Signal peptidase complex subunit 2 yes yes 0 0 1 0 By MS/MS By MS/MS 2.86 1.25 1 2 2 1 1 4 3 63.33 63.14 3 1.1628E-18 21490 20211116_3430_TMUAki_TMT10x_P_F3 159.04 152.19 16419000 28543000 329400 24552000 19579000 28073000 19607000 20385000 20653000 19592000 22638000 15289000 26618000 1635300 25381000 18789000 28209000 19919000 21090000 21035000 19167000 21777000 9 9 6 9 9 9 9 9 9 9 9 10312000 16639000 208020 14259000 10531000 18963000 11712000 11549000 11511000 11154000 12988000 9602500 15517000 976060 14785000 10135000 18861000 11812000 12105000 11772000 10910000 12483000 5 5 3 5 5 5 5 5 5 5 5 6106500 11903000 121380 10293000 9047800 9109800 7894300 8835500 9141600 8438200 9649900 5686700 11101000 659260 10596000 8653800 9347300 8106400 8985300 9263500 8257600 9293200 4 4 3 4 4 4 4 4 4 4 4 4178300000 2812000000 1366300000 5355 1748 4996 28939;28940;28941;28942;28943;28944;28945 34566;34567;34568;34569;34570;34571;34572;34573;34574;34575 34568 2356 10 FFDHSGTLVMDAYEPEISR Unmodified 2213.0099 0.0099193444 1748 Q15005 SPCS2 Signal peptidase complex subunit 2 yes yes 0 0 0 0 By MS/MS By MS/MS 3.6 1.02 1 1 2 1 2 3 70.215 70.114 3 2.0586E-08 21781 20211116_3444_TMUAki_TMT10x_S_F5 105.9 94.953 32178000 54859000 640210 55184000 36134000 44235000 38967000 31143000 33517000 34687000 40778000 29964000 51191000 3151500 56111000 34746000 45445000 39209000 32431000 34594000 33731000 39113000 8 8 5 8 8 8 8 8 8 8 8 12110000 19558000 223090 19745000 12233000 21532000 13784000 11985000 13359000 12827000 15019000 11277000 18251000 1176200 20157000 11780000 21611000 13888000 12693000 13668000 12492000 14437000 4 4 3 4 4 4 4 4 4 4 4 20068000 35301000 417120 35439000 23900000 22703000 25182000 19158000 20157000 21860000 25759000 18688000 32940000 1975300 35954000 22966000 23834000 25321000 19738000 20925000 21239000 24675000 4 4 2 4 4 4 4 4 4 4 4 3980900000 2017800000 1963000000 5356 1748 4996 28946;28947;28948;28949;28950 34576;34577;34578;34579;34580;34581;34582;34583 34583 8 FFEDYGLFMR Oxidation (M) 1339.5907 0.59070906 1578 Q12931;Q12931-2 TRAP1 Heat shock protein 75 kDa, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 77.297 77.332 2 0.0131 25031 20211116_3445_TMUAki_TMT10x_S_F6 69.198 54.225 16953000 28572000 0 24221000 21487000 24848000 21894000 20993000 19764000 20482000 22320000 15784000 26645000 1374500 25026000 20607000 25188000 22120000 21524000 20290000 20025000 21452000 4 4 0 4 4 4 4 4 4 4 4 4632300 7230800 0 6454100 4183200 8885000 5324000 5700400 5413400 5404900 5460200 4313100 6744200 363320 6675400 4038700 8829900 5343500 5947600 5505000 5290900 5265800 1 1 0 1 1 1 1 1 1 1 1 12321000 21341000 0 17767000 17304000 15963000 16570000 15293000 14350000 15077000 16860000 11471000 19900000 1011200 18351000 16568000 16358000 16777000 15576000 14785000 14734000 16187000 3 3 0 3 3 3 3 3 3 3 3 1845900000 591280000 1254600000 5357 1578 4997 28951;28952;28953 34584;34585;34586;34587 34585 2138 4 FFEDYGLFMR Unmodified 1323.5958 0.59579444 1578 Q12931;Q12931-2 TRAP1 Heat shock protein 75 kDa, mitochondrial yes no 0 0 0 0 By MS/MS 7 0 1 1 79.314 79.364 2 0.060646 28007 20211116_3446_TMUAki_TMT10x_S_F7 53.404 32.884 4010600 6390400 37018 6095600 5011100 3725600 5326000 2879500 2502800 3168000 4556300 3734500 5961800 381020 6203900 4815100 3922600 5298600 2979000 2742600 3082100 4331700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4010600 6390400 37018 6095600 5011100 3725600 5326000 2879500 2502800 3168000 4556300 3734500 5961800 381020 6203900 4815100 3922600 5298600 2979000 2742600 3082100 4331700 1 1 1 1 1 1 1 1 1 1 1 555030000 0 555030000 5358 1578 4997 28954 34588 34588 1 FFEGPVTGIFSGYVNSMLQEYAK Oxidation (M) 2599.2305 0.23047681 1234 P55060;P55060-3;P55060-4 CSE1L Exportin-2 yes no 0 0 1 0 By MS/MS 2 0 1 1 81.065 81.051 3 1.1105E-15 26910 20211116_3440_TMUAki_TMT10x_S_F2 133.24 124.95 2436700 4066100 0 3653700 2337500 3009200 3215300 2357500 1895300 2973500 2876400 2268600 3792600 177660 3746800 2261900 3090700 3174700 2448300 2020700 2878700 2744400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2436700 4066100 0 3653700 2337500 3009200 3215300 2357500 1895300 2973500 2876400 2268600 3792600 177660 3746800 2261900 3090700 3174700 2448300 2020700 2878700 2744400 1 1 0 1 1 1 1 1 1 1 1 608250000 0 608250000 5359 1234 4998 28955 34589 34589 1661 1 FFEHFIEGGR Unmodified 1237.588 0.58800695 2463 Q96FW1;Q96FW1-2 OTUB1 Ubiquitin thioesterase OTUB1 yes no 0 0 0 0 By MS/MS By MS/MS 5.33 1.15 3 2 2 2 5 4 59.173 59.389 3 9.3149E-14 18229 20211116_3431_TMUAki_TMT10x_P_F4 201.61 170.13 25809000 41497000 181430 42941000 31441000 39637000 28706000 30768000 29152000 28638000 33566000 24030000 38727000 2105600 43655000 30071000 40384000 29274000 31667000 29794000 28057000 32244000 8 8 2 8 8 8 8 8 8 8 8 13850000 21549000 34988 21719000 18355000 28005000 17072000 15630000 14657000 14472000 16604000 12895000 20108000 1110700 22238000 17561000 27863000 17309000 16481000 15086000 14181000 15957000 4 4 1 4 4 4 4 4 4 4 4 11959000 19949000 146440 21222000 13086000 11632000 11634000 15139000 14495000 14167000 16963000 11135000 18619000 994900 21417000 12510000 12520000 11965000 15186000 14708000 13876000 16287000 4 4 1 4 4 4 4 4 4 4 4 6121400000 2742000000 3379400000 5360 2463 4999 28956;28957;28958;28959;28960;28961;28962;28963;28964 34590;34591;34592;34593;34594;34595;34596;34597;34598;34599 34590 10 FFEPSPPQPSGLR Unmodified 1457.7303 0.73031409 3396 yes yes 0 0 0 0 By MS/MS By MS/MS 5.09 3.12 4 4 3 5 6 69.217 69.314 2 0.0016391 21979 20211116_3436_TMUAki_TMT10x_P_F8 78.149 28.731 + 78133000 114230000 239640 111680000 67903000 72943000 78615000 41935000 37873000 46154000 73421000 72748000 106580000 6087800 113530000 65362000 76002000 77921000 44328000 41574000 44903000 69726000 14 14 7 14 14 14 14 14 14 14 14 35315000 49753000 119670 49511000 21759000 38978000 28743000 17804000 16792000 20014000 32787000 32881000 46424000 2710900 50369000 21038000 39882000 28420000 19237000 18174000 19456000 31133000 6 6 3 6 6 6 6 6 6 6 6 42818000 64481000 119970 62165000 46144000 33965000 49872000 24131000 21081000 26139000 40634000 39866000 60159000 3376900 63160000 44325000 36120000 49501000 25091000 23400000 25446000 38593000 8 8 4 8 8 8 8 8 8 8 8 12468000000 5385900000 7082300000 5361 3396 5000 28965;28966;28967;28968;28969;28970;28971;28972;28973;28974;28975 34600;34601;34602;34603;34604;34605;34606;34607 34602 8 FFESFGDLSSADAILGNPK Unmodified 2013.9684 0.96837211 53 CON__Q3SX09 yes yes 0 0 0 0 By MS/MS By MS/MS 5.53 1.8 1 1 3 3 7 5 8 4 18 14 74.036 74.034 2;3;4 8.4768E-71 25888 20211116_3434_TMUAki_TMT10x_P_F6 289.75 269.45 + 83267000 139960000 421560 120810000 131060000 185430000 150880000 247040000 285310000 259540000 176410000 77529000 130530000 4561700 125560000 126160000 186310000 156170000 248440000 280510000 252970000 173550000 27 28 9 28 28 29 28 29 28 28 29 42490000 73440000 330220 60670000 65371000 131180000 79076000 127050000 148450000 142710000 89072000 39563000 68479000 3236000 63850000 63028000 129200000 81641000 129850000 145880000 138730000 87763000 15 16 6 16 16 17 16 17 16 16 17 40777000 66520000 91338 60137000 65687000 54253000 71803000 120000000 136860000 116840000 87341000 37966000 62046000 1325700 61713000 63129000 57110000 74527000 118590000 134630000 114240000 85787000 12 12 3 12 12 12 12 12 12 12 12 60706000000 29685000000 31021000000 5362 53 5001 28976;28977;28978;28979;28980;28981;28982;28983;28984;28985;28986;28987;28988;28989;28990;28991;28992;28993;28994;28995;28996;28997;28998;28999;29000;29001;29002;29003;29004;29005;29006;29007 34608;34609;34610;34611;34612;34613;34614;34615;34616;34617;34618;34619;34620;34621;34622;34623;34624;34625;34626;34627;34628;34629;34630;34631;34632;34633;34634;34635;34636;34637;34638;34639;34640;34641;34642;34643;34644 34619 37 FFFDPVRK Unmodified 1054.56 0.56000128 2939 Q9NRZ9;Q9NRZ9-4;Q9NRZ9-3;Q9NRZ9-2;Q9NRZ9-6;Q9NRZ9-5;Q9NRZ9-8;Q9NRZ9-7 HELLS Lymphoid-specific helicase yes no 0 0 0 1 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 59.631 59.453 3 0.0004307 18689 20211116_3442_TMUAki_TMT10x_S_F4 134.48 96.392 29089000 44758000 37701 49376000 32332000 34357000 26343000 23780000 24599000 24043000 32113000 27084000 41782000 2359500 49821000 30845000 35689000 26980000 24719000 25369000 23471000 30745000 5 5 1 5 5 5 5 5 5 5 5 13895000 20987000 0 22565000 17198000 22016000 13487000 11218000 11304000 11181000 14740000 12937000 19589000 1135600 22900000 16393000 22219000 13807000 11949000 11717000 10921000 14113000 2 2 0 2 2 2 2 2 2 2 2 15194000 23771000 37701 26811000 15134000 12341000 12856000 12562000 13296000 12863000 17373000 14146000 22192000 1223900 26921000 14451000 13470000 13173000 12770000 13652000 12550000 16633000 3 3 1 3 3 3 3 3 3 3 3 3273700000 1649000000 1624700000 5363 2939 5002 29008;29009;29010;29011;29012;29013 34645;34646;34647;34648;34649;34650 34650 6 FFGGYVPEMVLTPDDQR Oxidation (M) 1985.9193 0.91931342 1254 P56192 MARS Methionine--tRNA ligase, cytoplasmic yes yes 0 0 1 0 By MS/MS 6 0 1 1 76.216 76.178 3 0.010247 24180 20211116_3434_TMUAki_TMT10x_P_F6 50.079 38.639 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5364 1254 5003 29014 34651 34651 1701 1 FFLEETLVRR Unmodified 1308.719 0.71902112 3038 Q9NZT2;Q9NZT2-2 OGFR Opioid growth factor receptor yes no 0 0 0 1 By MS/MS 8 0 1 1 60.448 60.633 3 1.4147E-13 18419 20211116_3436_TMUAki_TMT10x_P_F8 200.71 167.52 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5365 3038 5004 29015 34652 34652 1 FFLGDLCSR Unmodified 1113.5277 0.52771487 1826 Q15738 NSDHL Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating yes yes 0 0 0 0 By MS/MS By MS/MS 4.25 3.27 2 1 1 2 2 68.774 68.824 2 2.1476E-05 23796 20211116_3439_TMUAki_TMT10x_S_F1 156.51 140.87 9872400 17406000 83961 15447000 12664000 11071000 11437000 10939000 9668200 11499000 12883000 9192800 16235000 935830 15832000 12117000 11545000 11610000 11145000 10027000 11208000 12328000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9872400 17406000 83961 15447000 12664000 11071000 11437000 10939000 9668200 11499000 12883000 9192800 16235000 935830 15832000 12117000 11545000 11610000 11145000 10027000 11208000 12328000 2 2 2 2 2 2 2 2 2 2 2 1086000000 201150000 884810000 5366 1826 5005 29016;29017;29018;29019 34653;34654;34655 34654 3 FFLLENVR Unmodified 1036.5706 0.57056597 811 P26358;P26358-2;P26358-3 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 0 0 0 0 By MS/MS 2 0 1 1 73.914 73.729 2 0.0051287 25238 20211116_3429_TMUAki_TMT10x_P_F2 89.752 32.193 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5367 811 5006 29020 34656 34656 1 FFLQDPQSQELDVQVK Unmodified 1919.9629 0.9628928 2652 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 By MS/MS 4 0 1 1 76.749 76.772 3 0.10538 25161 20211116_3431_TMUAki_TMT10x_P_F4 21.237 8.6109 4174900 6787700 80380 5792200 3611400 7103700 4712500 4910700 3194400 3544700 5300700 3887800 6330000 413140 5998900 3495300 7106600 4675500 5062700 3390900 3518200 5048200 1 1 1 1 1 1 1 1 1 1 1 4174900 6787700 80380 5792200 3611400 7103700 4712500 4910700 3194400 3544700 5300700 3887800 6330000 413140 5998900 3495300 7106600 4675500 5062700 3390900 3518200 5048200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1572900000 1572900000 0 5368 2652 5007 29021 34657 34657 1 FFLSHPAYR Unmodified 1136.5767 0.57671398 1140 P50570;P50570-3;P50570-2;P50570-5;P50570-4;Q9UQ16-5 DNM2 Dynamin-2 no no 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 44.867 44.912 3 0.00016481 12612 20211116_3442_TMUAki_TMT10x_S_F4 122.33 99.31 4221800 6564100 155230 7796800 5731400 5788500 4663900 5603900 5367200 4846900 5952700 3932100 6129600 515830 7837000 5478100 6016700 4808400 5684400 5450200 4764900 5724300 5 5 5 5 5 5 5 5 5 5 5 1818000 2803600 75117 3333500 3362900 3641300 2321800 2369700 2258700 1994600 2610800 1693300 2618000 242370 3367900 3202900 3662000 2407600 2462300 2313100 1963400 2507600 2 2 2 2 2 2 2 2 2 2 2 2403900 3760600 80114 4463400 2368400 2147200 2342100 3234300 3108500 2852400 3342000 2238900 3511600 273470 4469100 2275100 2354700 2400800 3222100 3137100 2801500 3216700 3 3 3 3 3 3 3 3 3 3 3 926920000 603680000 323240000 5369 1140 5008 29022;29023;29024;29025;29026;29027 34658;34659;34660;34661;34662 34661 5 FFLSSGLIDKVDNFK Unmodified 1728.9087 0.90867238 2668 Q9BTV4 TMEM43 Transmembrane protein 43 yes yes 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 78.57 78.534 3 5.6046E-10 27661 20211116_3430_TMUAki_TMT10x_P_F3 136.01 116.98 27542000 42438000 47269 42390000 26647000 41565000 34008000 25267000 27764000 30243000 33663000 25643000 39599000 2174700 43236000 25730000 42028000 33918000 26661000 28728000 29332000 32291000 4 4 1 4 4 4 4 4 4 4 4 15626000 23306000 0 23980000 14857000 27167000 17394000 13774000 15823000 16934000 18657000 14550000 21750000 1251900 24464000 14307000 27179000 17462000 14775000 16267000 16408000 17910000 2 2 0 2 2 2 2 2 2 2 2 11915000 19132000 47269 18410000 11791000 14397000 16615000 11493000 11941000 13309000 15006000 11094000 17849000 922760 18772000 11423000 14849000 16456000 11886000 12461000 12924000 14381000 2 2 1 2 2 2 2 2 2 2 2 2351600000 1367200000 984430000 5370 2668 5009 29028;29029;29030 34663;34664;34665;34666 34663 4 FFMGNQVLK Oxidation (M) 1098.5532 0.55320134 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 1 0 By MS/MS By MS/MS 2.71 2.25 2 3 1 1 4 3 57.689 57.453 2;3 0.0023339 18586 20211116_3429_TMUAki_TMT10x_P_F2 69.628 41.133 33435000 56774000 234340 52280000 49264000 58259000 42332000 65534000 65941000 51366000 58771000 31131000 52960000 2908600 53741000 47057000 59145000 44032000 65839000 65796000 50750000 56916000 4 4 2 4 4 4 4 4 4 4 4 17286000 25923000 185580 24433000 30584000 42357000 23860000 29498000 29735000 25351000 27593000 16096000 24183000 1749100 25299000 29165000 41756000 24736000 30516000 29917000 24930000 26684000 2 2 1 2 2 2 2 2 2 2 2 16150000 30852000 48755 27848000 18680000 15901000 18472000 36036000 36206000 26015000 31178000 15035000 28777000 1159500 28443000 17892000 17389000 19297000 35322000 35879000 25820000 30232000 2 2 1 2 2 2 2 2 2 2 2 5309700000 3515000000 1794700000 5371 648 5010 29031;29032;29033;29034;29035;29036;29037 34667;34668;34669;34670;34671;34672 34669 697 6 FFMGNQVLK Unmodified 1082.5583 0.55828672 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 66.056 65.828 2 3.5893E-06 22562 20211116_3430_TMUAki_TMT10x_P_F3 188.89 155.63 56221000 88702000 74811 93054000 67372000 61252000 60531000 35211000 28417000 36355000 61134000 52345000 82785000 4601600 94147000 64413000 63776000 60762000 37149000 31476000 35459000 57961000 6 6 2 6 6 6 6 6 6 6 6 24864000 38951000 8110.9 39845000 37214000 40451000 35226000 16547000 13420000 17240000 26379000 23149000 36349000 2074400 40594000 35622000 40635000 35160000 18051000 15067000 16809000 25046000 3 3 1 3 3 3 3 3 3 3 3 31357000 49751000 66700 53209000 30158000 20801000 25305000 18665000 14998000 19115000 34755000 29196000 46436000 2527200 53553000 28791000 23142000 25602000 19098000 16409000 18650000 32915000 3 3 1 3 3 3 3 3 3 3 3 4781300000 2504700000 2276600000 5372 648 5010 29038;29039;29040;29041;29042;29043 34673;34674;34675;34676;34677;34678 34674 6 FFPASADR Unmodified 909.43447 0.43446642 533 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 44.861 44.983 2 0.0014225 11680 20211116_3445_TMUAki_TMT10x_S_F6 122.18 98.204 19603000 32334000 29668 35096000 31811000 30344000 21680000 26433000 28167000 23196000 28921000 18251000 30181000 1638000 35537000 30237000 31117000 22721000 26976000 28398000 22788000 27876000 7 7 2 7 7 7 7 7 7 7 7 8919900 13947000 5147.4 14930000 21223000 20997000 12123000 11860000 12718000 10263000 12934000 8304300 13017000 785380 15253000 20113000 20811000 12791000 12471000 12920000 10089000 12470000 3 3 1 3 3 3 3 3 3 3 3 10683000 18387000 24521 20165000 10588000 9346900 9556700 14573000 15450000 12933000 15987000 9946900 17164000 852650 20285000 10124000 10307000 9930100 14504000 15478000 12698000 15406000 4 4 1 4 4 4 4 4 4 4 4 970180000 628570000 341620000 5373 533 5011 29044;29045;29046;29047;29048 34679;34680;34681;34682;34683;34684;34685 34685 7 FFPEDVSEELIQEITQR Unmodified 2079.0161 0.01605058 926 P35241;P35241-5;P35241-3 RDX Radixin yes no 0 0 0 0 By MS/MS 1.67 0.471 1 2 3 82.135 82.135 3 3.3444E-11 27138 20211116_3428_TMUAki_TMT10x_P_F1 132.81 117.62 1527800 2439300 0 2397300 1494900 2541000 1663800 1284900 1255300 1701600 1633100 1422400 2276000 113060 2450700 1436800 2551500 1666200 1382300 1308300 1644700 1563700 1 1 0 1 1 1 1 1 1 1 1 1527800 2439300 0 2397300 1494900 2541000 1663800 1284900 1255300 1701600 1633100 1422400 2276000 113060 2450700 1436800 2551500 1666200 1382300 1308300 1644700 1563700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 220420000 220420000 0 5374 926 5012 29049;29050;29051 34686;34687;34688 34686 3 FFPEPSGLHEK Unmodified 1286.6295 0.62953741 136 O14813 PHOX2A Paired mesoderm homeobox protein 2A yes yes 0 0 0 0 By MS/MS By MS/MS 6.29 1.03 2 2 2 1 4 3 50.077 50.299 3 5.6673E-12 15464 20211116_3435_TMUAki_TMT10x_P_F7 138.45 88.096 19427000 33778000 62820 38097000 22934000 24446000 14825000 23314000 23770000 22131000 26973000 18087000 31535000 1540100 38356000 21778000 25720000 15738000 23726000 23904000 21663000 25920000 6 6 2 6 6 6 6 6 6 6 6 5233300 7777700 38699 8556300 9151500 12478000 4443200 5439400 5221600 4860800 6783900 4872800 7260400 509550 8732500 8657800 12312000 4777200 5868300 5333500 4771200 6495800 2 2 1 2 2 2 2 2 2 2 2 14193000 26000000 24121 29540000 13782000 11968000 10382000 17875000 18548000 17270000 20189000 13214000 24274000 1030600 29623000 13121000 13409000 10961000 17858000 18570000 16892000 19424000 4 4 1 4 4 4 4 4 4 4 4 1342300000 833500000 508750000 5375 136 5013 29052;29053;29054;29055;29056;29057;29058 34689;34690;34691;34692;34693;34694;34695;34696 34691 8 FFPHVLEK Unmodified 1015.5491 0.54910224 2644 Q9BRT9 GINS4 DNA replication complex GINS protein SLD5;DNA replication complex GINS protein SLD5, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 54.985 55.009 3 0.0025272 15661 20211116_3447_TMUAki_TMT10x_S_F8 91.318 65.2 3710000 6495500 125600 6573700 6354000 8112200 4839400 5981200 5837600 5387700 5570400 3455300 6061300 461670 6723800 6062000 8121400 5018900 6171000 5885600 5286300 5381900 3 3 3 3 3 3 3 3 3 3 3 2447100 4108400 98460 4228700 4905600 6571700 3600800 3753700 3558600 3413600 3598500 2279200 3834100 329080 4340600 4676900 6486900 3719400 3948500 3623600 3347900 3470100 2 2 2 2 2 2 2 2 2 2 2 1262800 2387100 27139 2345000 1448400 1540600 1238500 2227500 2279000 1974100 1972000 1176000 2227300 132590 2383200 1385100 1634500 1299500 2222500 2262000 1938500 1911800 1 1 1 1 1 1 1 1 1 1 1 458840000 338930000 119910000 5376 2644 5014 29059;29060 34697;34698;34699 34699 3 FFPLIEVNK Unmodified 1105.6172 0.61718181 828 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 78.042 78.001 2 1.8264E-05 26957 20211116_3429_TMUAki_TMT10x_P_F2 157.33 111.61 22050000 34335000 0 41237000 23186000 25297000 22740000 14944000 14553000 17539000 25419000 20529000 32064000 1640100 41342000 22207000 26522000 22836000 15794000 15549000 17023000 24184000 2 2 0 2 2 2 2 2 2 2 2 11013000 16131000 0 19931000 11289000 16632000 10680000 6712400 5936500 7803400 12304000 10253000 15066000 784640 20015000 10801000 16924000 10719000 7358000 6473000 7576300 11673000 1 1 0 1 1 1 1 1 1 1 1 11037000 18204000 0 21306000 11897000 8665600 12059000 8231300 8616900 9736000 13114000 10276000 16998000 855460 21327000 11407000 9597800 12117000 8436000 9076400 9446700 12512000 1 1 0 1 1 1 1 1 1 1 1 2437600000 1426100000 1011600000 5377 828 5015 29061;29062;29063 34700;34701;34702 34700 3 FFPSVPLFGFFGNGEIGCDR Unmodified 2262.0568 0.056809958 2247 Q8NEZ5 FBXO22 F-box only protein 22 yes yes 0 0 0 0 By MS/MS 4 0 1 1 83.026 83.019 3 5.0455E-13 28333 20211116_3442_TMUAki_TMT10x_S_F4 130.56 118.94 677110 1211600 1294.4 1198800 966740 834230 1013600 797460 733390 853880 938550 630360 1130500 48723 1218400 927390 871520 1017000 814340 765640 831620 899030 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 677110 1211600 1294.4 1198800 966740 834230 1013600 797460 733390 853880 938550 630360 1130500 48723 1218400 927390 871520 1017000 814340 765640 831620 899030 2 2 1 2 2 2 2 2 2 2 2 55547000 0 55547000 5378 2247 5016 29064 34703;34704 34704 2 FFQGMPEKPTTTVR Oxidation (M) 1653.8185 0.81847717 1027 P43246 MSH2 DNA mismatch repair protein Msh2 yes yes 0 0 1 1 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 44.267 44.265 3 8.1182E-07 13747 20211116_3439_TMUAki_TMT10x_S_F1 100.18 86.77 3319900 5500800 14713 6297700 5874600 5879700 3521000 5890000 6982600 4939700 5352100 3090900 5135800 272030 6362100 5571100 6015800 3801700 5959600 6894300 4863600 5213500 3 3 1 3 3 3 3 3 3 3 3 1495300 2493900 14713 2876000 4209100 4395200 2190400 2829300 3301400 2334900 2406100 1392400 2328500 175690 2929700 3986100 4348700 2361700 2940800 3278200 2300700 2348800 1 1 1 1 1 1 1 1 1 1 1 1824700 3006900 0 3421700 1665400 1484400 1330700 3060800 3681200 2604900 2946000 1698500 2807300 96340 3432400 1585000 1667200 1440000 3018800 3616100 2562800 2864600 2 2 0 2 2 2 2 2 2 2 2 431400000 323690000 107710000 5379 1027 5017 29065;29066;29067 34705;34706;34707;34708 34706 1328 4 FFQGMPEKPTTTVR Unmodified 1637.8236 0.82356254 1027 P43246 MSH2 DNA mismatch repair protein Msh2 yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 52.82 52.446 3 0.00018863 18148 20211116_3441_TMUAki_TMT10x_S_F3 83.54 68.338 3527400 6348000 38383 7617900 2687900 2200500 2267400 2728400 2498000 3146200 4714000 3284700 5928100 316460 7600800 2569000 2587700 2329000 2759900 2609800 3055500 4478800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3527400 6348000 38383 7617900 2687900 2200500 2267400 2728400 2498000 3146200 4714000 3284700 5928100 316460 7600800 2569000 2587700 2329000 2759900 2609800 3055500 4478800 1 1 1 1 1 1 1 1 1 1 1 192150000 0 192150000 5380 1027 5017 29068;29069 34709;34710 34710 2 FFQPTEMASQDFFQR Oxidation (M) 1893.8356 0.83558379 400 O94973;O94973-2 AP2A2 AP-2 complex subunit alpha-2 yes no 0 0 1 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 70.951 70.88 3 0.010004 24458 20211116_3446_TMUAki_TMT10x_S_F7 56.527 49.488 4944700 8294600 48218 7898100 6378600 7657700 5596900 6025300 5632100 5878800 6444700 4604400 7738300 474970 8081800 6099400 7779300 5719100 6204100 5757000 5747600 6191800 2 2 2 2 2 2 2 2 2 2 2 2538100 4198400 36676 3895200 2817600 4993700 2814200 2845400 2874000 3058100 3041500 2363500 3916400 248520 4011600 2703800 4971200 2856600 3007800 2927100 2978000 2928900 1 1 1 1 1 1 1 1 1 1 1 2406600 4096200 11542 4003000 3560900 2664000 2782700 3179900 2758100 2820700 3403200 2240900 3821900 226450 4070300 3395500 2808100 2862500 3196300 2829800 2769600 3263000 1 1 1 1 1 1 1 1 1 1 1 489140000 205590000 283550000 5381 400 5018 29070;29071;29072 34711;34712;34713 34713 303 3 FFSGYGR Unmodified 832.38679 0.38678794 1613 Q13247;Q13247-3;Q13247-2 SRSF6 Serine/arginine-rich splicing factor 6 yes no 0 0 0 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 47.455 47.305 2 0.001446 14547 20211116_3429_TMUAki_TMT10x_P_F2 145.88 128.19 29118000 45777000 158440 53710000 55282000 47283000 33290000 39903000 41623000 33207000 40579000 27112000 42745000 2814600 54137000 52456000 48400000 35175000 40743000 41943000 32708000 39177000 4 4 1 4 4 4 4 4 4 4 4 16207000 25646000 158440 30400000 42575000 36858000 21587000 22733000 24901000 18518000 22858000 15091000 23948000 1796500 30774000 40301000 36832000 23097000 23700000 25115000 18259000 22113000 2 2 1 2 2 2 2 2 2 2 2 12911000 20132000 0 23310000 12706000 10426000 11703000 17170000 16722000 14689000 17721000 12021000 18797000 1018100 23363000 12155000 11567000 12078000 17043000 16827000 14449000 17064000 2 2 0 2 2 2 2 2 2 2 2 2387000000 1456000000 931040000 5382 1613 5019 29073;29074;29075;29076;29077 34714;34715;34716;34717;34718 34715 5 FFTDNVPALVQGFHAAPQDVKPNYLK Unmodified 2915.497 0.49701368 2564 Q96T76;Q96T76-9;Q96T76-8;Q96T76-5 MMS19 MMS19 nucleotide excision repair protein homolog yes no 0 0 0 1 By MS/MS 3 0 1 1 76.839 76.703 5 0.0018067 27901 20211116_3441_TMUAki_TMT10x_S_F3 58.938 51.661 2244900 3838000 43104 3707500 3397100 2566400 2877900 2582100 2147800 2413600 2924500 2090500 3580700 242430 3774400 3246800 2685200 2923700 2619500 2244500 2364200 2797100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2244900 3838000 43104 3707500 3397100 2566400 2877900 2582100 2147800 2413600 2924500 2090500 3580700 242430 3774400 3246800 2685200 2923700 2619500 2244500 2364200 2797100 1 1 1 1 1 1 1 1 1 1 1 439290000 0 439290000 5383 2564 5020 29078 34719 34719 1 FFTTPSK Unmodified 826.4225 0.42250475 377 O76021;O76021-2 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 51.433 51.284 2 0.018776 14826 20211116_3440_TMUAki_TMT10x_S_F2 89.298 70.92 7121700 11594000 96630 11746000 7167700 6359200 7005900 9370900 9209700 8495100 9886900 6631700 10819000 681140 11892000 6874600 6878300 7183100 9349500 9296900 8332900 9516600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7121700 11594000 96630 11746000 7167700 6359200 7005900 9370900 9209700 8495100 9886900 6631700 10819000 681140 11892000 6874600 6878300 7183100 9349500 9296900 8332900 9516600 2 2 2 2 2 2 2 2 2 2 2 116590000 0 116590000 5384 377 5021 29079;29080 34720;34721;34722 34722 3 FFTYGNFPLEQHLK Unmodified 1739.8671 0.86714192 1919 Q5JRX3;Q5JRX3-2;Q5JRX3-3 PITRM1 Presequence protease, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 71.823 71.685 3 6.334E-05 23142 20211116_3440_TMUAki_TMT10x_S_F2 93.494 74.661 2268000 4504200 71066 3752200 3322100 2536500 2585000 2975200 2868200 2880100 3406900 2112200 4200100 269020 3862800 3171100 2668800 2669400 3000000 2924700 2816800 3269800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2268000 4504200 71066 3752200 3322100 2536500 2585000 2975200 2868200 2880100 3406900 2112200 4200100 269020 3862800 3171100 2668800 2669400 3000000 2924700 2816800 3269800 1 1 1 1 1 1 1 1 1 1 1 255530000 0 255530000 5385 1919 5022 29081;29082 34723;34724 34724 2 FFVGGNWK Unmodified 953.47594 0.4759373 1271 P60174;P60174-1 TPI1 Triosephosphate isomerase yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 66.7 66.491 2 0.00084225 21568 20211116_3442_TMUAki_TMT10x_S_F4 132.96 75.858 77434000 126030000 486080 139930000 104350000 90548000 89173000 44733000 38810000 48087000 91264000 72100000 117650000 6943000 141030000 99685000 94261000 89687000 47894000 43548000 46826000 86415000 5 5 2 5 5 5 5 5 5 5 5 33656000 54496000 351130 60895000 60620000 63113000 51228000 19585000 18103000 21273000 39805000 31339000 50874000 3412700 61704000 57905000 63181000 51428000 22160000 20636000 20707000 37726000 2 2 1 2 2 2 2 2 2 2 2 43778000 71531000 134960 79031000 43732000 27435000 37946000 25148000 20707000 26814000 51460000 40761000 66774000 3530300 79324000 41780000 31080000 38259000 25734000 22911000 26120000 48689000 3 3 1 3 3 3 3 3 3 3 3 5766400000 3567900000 2198500000 5386 1271 5023 29083;29084;29085;29086;29087;29088 34725;34726;34727;34728;34729;34730;34731 34730 7 FFVSSSQGR Unmodified 1013.493 0.49304393 939 P35613;P35613-2;P35613-4;P35613-3 BSG Basigin yes no 0 0 0 0 By MS/MS By MS/MS 3.2 2.48 1 2 1 1 1 4 42.934 42.74 2 8.7641E-16 11228 20211116_3440_TMUAki_TMT10x_S_F2 250.8 231.16 7645800 12270000 61933 14335000 16198000 13194000 8633200 10002000 10981000 8360800 11645000 7119300 11457000 785600 14461000 15343000 13440000 9225200 10282000 11092000 8233200 11213000 5 5 3 5 5 5 5 5 5 5 5 4391700 6865000 9265.4 7998500 13358000 10482000 5801900 5648900 6192600 4689700 6657700 4089100 6410000 482440 8116800 12618000 10416000 6292300 5958600 6299300 4619700 6408100 2 2 1 2 2 2 2 2 2 2 2 3254100 5404800 52667 6336100 2839400 2712300 2831400 4353400 4788000 3671100 4987500 3030200 5046700 303160 6343900 2724900 3023600 2933000 4323000 4792400 3613500 4805100 3 3 2 3 3 3 3 3 3 3 3 384690000 225450000 159240000 5387 939 5024 29089;29090;29091;29092;29093 34732;34733;34734;34735;34736;34737 34735 6 FFVTLLEAQADYHRK Unmodified 1836.9523 0.95226853 1965 Q68EM7;Q68EM7-2;Q68EM7-6;Q68EM7-5 ARHGAP17 Rho GTPase-activating protein 17 yes no 0 0 0 1 By MS/MS 3 0 1 1 71.912 71.541 4 3.012E-30 25907 20211116_3441_TMUAki_TMT10x_S_F3 211.06 168.85 1206500 2018800 0 1667200 1313200 1538300 1425800 1690100 1633800 1673100 1580100 1123300 1882400 84547 1723700 1260900 1578500 1446800 1710200 1651100 1634700 1526000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1206500 2018800 0 1667200 1313200 1538300 1425800 1690100 1633800 1673100 1580100 1123300 1882400 84547 1723700 1260900 1578500 1446800 1710200 1651100 1634700 1526000 1 1 0 1 1 1 1 1 1 1 1 423630000 0 423630000 5388 1965 5025 29094 34738 34738 1 FGAPPHAGGGIGLER Unmodified 1434.7368 0.73679645 678 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 34.904 35.044 3 2.1014E-10 9546 20211116_3434_TMUAki_TMT10x_P_F6 138.35 114.74 1939300 3112500 97452 3619500 2866600 2918600 2357400 2778700 2661900 2513500 2816800 1806400 2906200 263370 3646200 2741700 3013300 2427200 2824300 2700200 2465700 2712400 6 6 5 6 6 6 6 6 6 6 6 743420 1063400 56186 1240700 1715500 1808300 1128400 1137800 1071300 995690 1061200 692620 992920 127610 1261700 1633600 1792000 1173500 1186400 1092000 978290 1024000 1 1 1 1 1 1 1 1 1 1 1 1195800 2049100 41266 2378800 1151100 1110300 1229000 1641000 1590600 1517800 1755600 1113700 1913300 135750 2384500 1108100 1221300 1253700 1638000 1608200 1487400 1688500 5 5 4 5 5 5 5 5 5 5 5 336500000 240790000 95707000 5389 678 5026 29095;29096;29097;29098 34739;34740;34741;34742;34743;34744;34745 34739 7 FGAQNEEMLPSILVLLK Oxidation (M) 1917.0281 0.028135591 3339 Q9Y678 COPG1 Coatomer subunit gamma-1 yes yes 0 0 1 0 By MS/MS By MS/MS 8 0 2 1 1 80.839 80.839 3 0.00013764 26149 20211116_3447_TMUAki_TMT10x_S_F8 77.347 64.211 2221000 3683300 76598 3198500 2241400 3974700 2575500 2393900 2689900 2931600 3082800 2068500 3435100 255810 3308900 2162200 3965700 2598600 2529800 2745400 2841000 2961700 2 2 2 2 2 2 2 2 2 2 2 1357100 2214300 42764 1872700 1206600 2743700 1369700 1413600 1702500 1760000 1913800 1264000 2064900 150260 1947600 1163600 2711500 1391100 1514700 1724900 1704700 1839600 1 1 1 1 1 1 1 1 1 1 1 863860 1469000 33834 1325800 1034800 1230900 1205900 980320 987400 1171600 1169100 804590 1370200 105550 1361200 998570 1254200 1207500 1015100 1020500 1136300 1122100 1 1 1 1 1 1 1 1 1 1 1 793490000 467110000 326390000 5390 3339 5027 29099;29100 34746;34747 34747 3289 2 FGAQNESLLPSILVLLQR Unmodified 1997.131 0.13096118 3077 Q9UBF2;Q9UBF2-2 COPG2 Coatomer subunit gamma-2 yes no 0 0 0 0 By MS/MS 5 0 1 1 82.186 82.195 3 0.060476 26728 20211116_3444_TMUAki_TMT10x_S_F5 33.142 20.161 841680 1534200 0 1402700 1239700 902470 1170200 988650 872300 1018300 1183100 783680 1431000 74597 1432800 1186900 952170 1181400 1001700 911480 993260 1131700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 841680 1534200 0 1402700 1239700 902470 1170200 988650 872300 1018300 1183100 783680 1431000 74597 1432800 1186900 952170 1181400 1001700 911480 993260 1131700 1 1 0 1 1 1 1 1 1 1 1 139270000 0 139270000 5391 3077 5028 29101 34748 34748 1 FGATLEIVTDK Unmodified 1192.634 0.63395408 1360 P62495;P62495-2 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 0 0 0 0 By MS/MS 5 0 1 1 69.682 69.757 2 3.7175E-12 22737 20211116_3433_TMUAki_TMT10x_P_F5 143.89 93.417 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5392 1360 5029 29102 34749 34749 1 FGATLEIVTDKSQEGSQFVK Unmodified 2183.111 0.1110136 1360 P62495;P62495-2 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 0 0 0 1 By MS/MS 7 0 1 1 73.173 73.452 3 5.3585E-11 25031 20211116_3435_TMUAki_TMT10x_P_F7 114.28 98.334 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5393 1360 5030 29103 34750 34750 1 FGAVWTGDNTAEWDHLK Unmodified 1945.8959 0.89587586 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 By MS/MS By MS/MS 6 0.707 1 2 1 2 2 69.656 69.739 3 8.3569E-16 23409 20211116_3435_TMUAki_TMT10x_P_F7 153.95 143.49 39102000 65019000 441860 68665000 49743000 47823000 53288000 21814000 17606000 24837000 45255000 36410000 60683000 3678300 69481000 47803000 49420000 52762000 23582000 20454000 24133000 42800000 7 7 4 7 7 7 7 7 7 7 7 19618000 31766000 390680 33523000 26652000 31566000 31147000 9457900 7327400 11666000 21571000 18269000 29648000 2089100 34046000 25692000 31781000 30622000 10798000 9002100 11302000 20368000 3 3 3 3 3 3 3 3 3 3 3 19484000 33253000 51184 35142000 23091000 16257000 22140000 12356000 10279000 13171000 23684000 18141000 31036000 1589200 35435000 22112000 17639000 22141000 12784000 11452000 12830000 22432000 4 4 1 4 4 4 4 4 4 4 4 3960600000 1978700000 1981800000 5394 1730 5031 29104;29105;29106;29107 34751;34752;34753;34754;34755;34756;34757 34752 7 FGDLDEQEFVYKEPAITK Unmodified 2128.0365 0.036451671 2525 Q96N67;Q96N67-3;Q96N67-2;Q96N67-4;Q96N67-5;Q96N67-6;Q8NF50;Q8NF50-4;Q8NF50-3;Q8NF50-2 DOCK7;DOCK8 Dedicator of cytokinesis protein 7;Dedicator of cytokinesis protein 8 yes no 0 0 0 1 By MS/MS 4 0 1 1 70.014 70.084 3 0.010813 22612 20211116_3431_TMUAki_TMT10x_P_F4 50.397 42.405 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5395 2525 5032 29108 34758 34758 1 FGDLILK Unmodified 804.47454 0.47454032 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 By MS/MS 5 0 1 1 68.683 68.705 2 0.098989 21202 20211116_3444_TMUAki_TMT10x_S_F5 58.917 11.85 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5396 1997 5033 29109 34759 34759 1 FGDPECQVILPLLK Unmodified 1627.8644 0.86436473 766 P22102;P22102-2 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 7.38 0.781 3 4 9 11 5 60.404 60.479 2;3 4.7938E-23 28028 20211116_3446_TMUAki_TMT10x_S_F7 181.53 157.54 64585000 104290000 633280 99473000 59733000 94776000 78523000 54606000 43892000 63848000 77133000 60137000 97297000 5545400 101750000 57764000 95939000 77595000 57824000 47347000 61977000 73379000 17 17 12 17 17 17 17 17 17 17 17 38208000 60688000 457680 56737000 34421000 64138000 43507000 32442000 26462000 37213000 44228000 35578000 56614000 3346800 58270000 33248000 64171000 43128000 34727000 28296000 36148000 42115000 14 14 10 14 14 14 14 14 14 14 14 26377000 43603000 175600 42737000 25312000 30638000 35017000 22164000 17430000 26635000 32905000 24560000 40683000 2198600 43479000 24516000 31767000 34467000 23096000 19051000 25829000 31264000 3 3 2 3 3 3 3 3 3 3 3 13419000000 7450700000 5967800000 5397 766 5034 29110;29111;29112;29113;29114;29115;29116;29117;29118;29119;29120;29121;29122;29123;29124;29125 34760;34761;34762;34763;34764;34765;34766;34767;34768;34769;34770;34771;34772;34773;34774;34775;34776;34777;34778;34779 34776 20 FGDRFPAMSDAYDR Oxidation (M) 1662.7097 0.709655 469 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 1 1 By MS/MS By MS/MS 3.5 1.26 2 1 1 2 3 3 42.133 42.085 3 9.6042E-05 11416 20211116_3433_TMUAki_TMT10x_P_F5 93.909 86.544 4647800 8230500 29168 9106400 8484800 9261400 5531200 8600300 9025000 6933400 7973200 4327700 7683200 378770 9230500 8062800 9410500 5873200 8727700 8991100 6840200 7724000 4 4 2 4 4 4 4 4 4 4 4 2525700 4533200 19161 4852800 6370200 7355400 4043600 4634800 4801200 3618200 4364200 2351800 4231100 275760 4965500 6050400 7277700 4246700 4819200 4835700 3575700 4223500 2 2 1 2 2 2 2 2 2 2 2 2122100 3697300 10006 4253600 2114600 1906100 1487600 3965500 4223800 3315200 3609000 1975900 3452000 103010 4265000 2012400 2132800 1626500 3908500 4155400 3264600 3500500 2 2 1 2 2 2 2 2 2 2 2 1963800000 1543700000 420110000 5398 469 5035 29126;29127;29128;29129;29130;29131 34780;34781;34782 34781 357 3 FGDRFPAMSDAYDR Unmodified 1646.7147 0.71474038 469 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.816 2 2 2 4 2 51.763 51.918 3 7.0544E-30 14308 20211116_3444_TMUAki_TMT10x_S_F5 212.7 198.45 20396000 34707000 50051 37529000 30400000 30881000 24881000 25347000 21697000 22698000 27732000 18990000 32396000 1739400 37987000 29004000 31745000 25427000 25971000 22427000 22277000 26565000 6 6 4 6 6 6 6 6 6 6 6 10096000 17105000 6709.1 18428000 19414000 23228000 16302000 13247000 11214000 11645000 13585000 9399600 15966000 835440 18778000 18528000 23143000 16541000 13925000 11715000 11439000 13031000 3 3 1 3 3 3 3 3 3 3 3 10300000 17602000 43342 19100000 10985000 7652500 8578200 12100000 10483000 11053000 14147000 9590800 16430000 903950 19209000 10475000 8602000 8886100 12047000 10712000 10838000 13534000 3 3 3 3 3 3 3 3 3 3 3 1930800000 886500000 1044300000 5399 469 5035 29132;29133;29134;29135;29136;29137 34783;34784;34785;34786;34787;34788;34789;34790 34788 8 FGEPVLAGFAR Unmodified 1162.6135 0.61349341 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 65.339 65.627 2 2.9441E-11 19965 20211116_3447_TMUAki_TMT10x_S_F8 173.37 148.45 84328000 138880000 713890 143080000 96448000 111590000 92510000 84462000 85791000 87323000 106020000 78517000 129610000 7100200 145200000 92376000 115020000 93835000 87330000 88290000 85166000 101650000 6 6 2 6 6 6 6 6 6 6 6 34717000 56469000 0 59082000 43080000 64676000 44340000 34748000 34831000 34193000 43549000 32321000 52701000 2484800 60173000 41305000 64870000 44616000 36823000 36160000 33417000 41740000 2 2 0 2 2 2 2 2 2 2 2 49611000 82414000 713890 83995000 53368000 46916000 48169000 49715000 50960000 53130000 62474000 46196000 76907000 4615400 85023000 51070000 50145000 49218000 50507000 52130000 51749000 59910000 4 4 2 4 4 4 4 4 4 4 4 6461100000 3709300000 2751700000 5400 157 5036 29138;29139;29140;29141;29142;29143 34791;34792;34793;34794;34795;34796;34797;34798 34796 8 FGESTTGFNFSFK Unmodified 1467.667 0.66704513 1122 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 0 0 0 0 By MS/MS By matching 5.33 2.49 1 1 1 2 1 74.822 74.72 3 3.8005E-09 25818 20211116_3429_TMUAki_TMT10x_P_F2 122.46 94.787 1915900 3002100 0 2796600 1944100 3779600 2547100 1924700 1981200 1973000 2338100 1783800 2800500 148190 2882200 1878500 3748100 2534600 2051900 2053000 1924900 2244400 1 1 0 1 1 1 1 1 1 1 1 1915900 3002100 0 2796600 1944100 3779600 2547100 1924700 1981200 1973000 2338100 1783800 2800500 148190 2882200 1878500 3748100 2534600 2051900 2053000 1924900 2244400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 871230000 570830000 300400000 5401 1122 5037 29144;29145;29146 34799;34800 34799 2 FGEVVDCTIKTDPVTGR Unmodified 1892.9302 0.93021246 151;152 O14979;O14979-3;O14979-2 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like no no 0 0 0 1 By MS/MS 6 0 1 1 58.291 58.351 3 0.087711 16808 20211116_3434_TMUAki_TMT10x_P_F6 33.083 13.505 11142000 16782000 92374 16943000 13122000 19682000 12596000 9355700 8337300 9292900 10421000 10375000 15660000 1037600 17314000 12574000 19650000 12672000 10031000 8742100 9078600 9988700 1 1 1 1 1 1 1 1 1 1 1 11142000 16782000 92374 16943000 13122000 19682000 12596000 9355700 8337300 9292900 10421000 10375000 15660000 1037600 17314000 12574000 19650000 12672000 10031000 8742100 9078600 9988700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2311800000 2311800000 0 5402 151;152 5038 29147 34801 34801 1 FGEVVDCTLK Unmodified 1166.5642 0.56415996 1675 Q14103;Q14103-3;Q14103-4;Q14103-2 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes no 0 0 0 0 By MS/MS By MS/MS 4.55 1.07 6 8 8 7 14 15 59.057 59.053 2;3 5.9876E-09 21299 20211116_3441_TMUAki_TMT10x_S_F3 148.96 0 216920000 335430000 1804000 410280000 355940000 362290000 248590000 253590000 265200000 248840000 291370000 201970000 313270000 19419000 412540000 338560000 369590000 258280000 263180000 270000000 243230000 280270000 31 31 16 31 31 31 31 31 31 31 31 130770000 196630000 1192500 241890000 289700000 290790000 172510000 147740000 157390000 148930000 172440000 121760000 183640000 12970000 244300000 274820000 290010000 180640000 157470000 161310000 145410000 165880000 17 17 8 17 17 17 17 17 17 17 17 86154000 138800000 611460 168380000 66240000 71500000 76079000 105850000 107810000 99910000 118930000 80215000 129630000 6449100 168240000 63734000 79587000 77639000 105710000 108690000 97822000 114380000 14 14 8 14 14 14 14 14 14 14 14 33353000000 18787000000 14566000000 5403 1675 5039 29148;29149;29150;29151;29152;29153;29154;29155;29156;29157;29158;29159;29160;29161;29162;29163;29164;29165;29166;29167;29168;29169;29170;29171;29172;29173;29174;29175;29176 34802;34803;34804;34805;34806;34807;34808;34809;34810;34811;34812;34813;34814;34815;34816;34817;34818;34819;34820;34821;34822;34823;34824;34825;34826;34827;34828;34829;34830;34831;34832;34833;34834;34835 34821 34 FGEVVDCTLKLDPITGR Unmodified 1918.9822 0.98224803 1675 Q14103;Q14103-3;Q14103-4;Q14103-2 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes no 0 0 0 1 By MS/MS By MS/MS 5.69 1.57 2 2 3 3 4 2 7 9 74.749 74.755 2;3 1.6343E-45 23986 20211116_3445_TMUAki_TMT10x_S_F6 252.08 230.45 355560000 572480000 4789900 511520000 378670000 595360000 417030000 427880000 422480000 442470000 457250000 331090000 533960000 33258000 527400000 364270000 597580000 421170000 443930000 430800000 431540000 440010000 35 35 22 35 35 35 35 35 35 35 35 221090000 349510000 2795700 309960000 210130000 421050000 256580000 259860000 261910000 273220000 278260000 205870000 325980000 20162000 320670000 202780000 418460000 258000000 272750000 266800000 266290000 267920000 19 19 12 19 19 19 19 19 19 19 19 134470000 222970000 1994200 201560000 168530000 174310000 160440000 168010000 160570000 169260000 178980000 125220000 207980000 13097000 206730000 161490000 179120000 163170000 171180000 164000000 165250000 172090000 16 16 10 16 16 16 16 16 16 16 16 48834000000 22951000000 25883000000 5404 1675 5040 29177;29178;29179;29180;29181;29182;29183;29184;29185;29186;29187;29188;29189;29190;29191;29192 34836;34837;34838;34839;34840;34841;34842;34843;34844;34845;34846;34847;34848;34849;34850;34851;34852;34853;34854;34855;34856;34857;34858;34859;34860;34861;34862;34863;34864;34865;34866;34867;34868;34869;34870 34865 35 FGEYHKDDPSSFR Unmodified 1583.7005 0.70047052 1808 Q15436;Q15436-2 SEC23A Protein transport protein Sec23A yes no 0 0 0 1 By MS/MS 6 0 1 1 37.637 37.633 4 0.00066369 8601 20211116_3434_TMUAki_TMT10x_P_F6 80.441 49.614 212120 293600 404.15 378080 604310 521100 321300 251150 250560 230290 307530 197510 274280 23456 381870 572350 515970 338520 268350 260020 225770 294900 1 1 1 1 1 1 1 1 1 1 1 212120 293600 404.15 378080 604310 521100 321300 251150 250560 230290 307530 197510 274280 23456 381870 572350 515970 338520 268350 260020 225770 294900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22637000 22637000 0 5405 1808 5041 29193 34871 34871 1 FGFAESIANQR Unmodified 1238.6044 0.60438529 1526 Q06265;Q06265-2;Q06265-3;Q06265-4 EXOSC9 Exosome complex component RRP45 yes no 0 0 0 0 By MS/MS By MS/MS 7.6 0.49 2 3 2 3 55.534 56.161 2 1.0525E-15 18324 20211116_3446_TMUAki_TMT10x_S_F7 204.07 179.15 9826200 16640000 87374 16963000 13016000 15900000 11337000 13737000 13905000 12304000 13665000 9149900 15528000 940760 17266000 12443000 16215000 11667000 14033000 14025000 12076000 13190000 2 2 2 2 2 2 2 2 2 2 2 5089100 8515200 3043.2 8697000 8011600 11442000 7217100 7270900 7066800 6430900 7224300 4738500 7946300 465690 8900600 7662100 11393000 7357500 7578000 7201400 6315300 6964100 1 1 1 1 1 1 1 1 1 1 1 4737200 8124700 84331 8265700 5004100 4457800 4120200 6466400 6838000 5873400 6440800 4411400 7581700 475080 8365500 4781100 4821300 4309600 6455400 6823500 5760700 6225500 1 1 1 1 1 1 1 1 1 1 1 1249900000 659750000 590140000 5406 1526 5042 29194;29195;29196;29197;29198 34872;34873;34874;34875;34876 34874 5 FGFEIIETKK Unmodified 1210.6598 0.6597749 2762 Q9GZZ1;Q9GZZ1-2 NAA50 N-alpha-acetyltransferase 50 yes no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 63.524 63.518 3 3.6233E-09 19585 20211116_3436_TMUAki_TMT10x_P_F8 138.25 99.228 9050000 13977000 0 14561000 9070400 7450700 8941600 8886600 7521000 8389800 10202000 8426100 13044000 709170 14707000 8691200 8061200 9032600 8947900 7808600 8214300 9758400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9050000 13977000 0 14561000 9070400 7450700 8941600 8886600 7521000 8389800 10202000 8426100 13044000 709170 14707000 8691200 8061200 9032600 8947900 7808600 8214300 9758400 1 1 0 1 1 1 1 1 1 1 1 559490000 0 559490000 5407 2762 5043 29199;29200;29201;29202 34877;34878;34879;34880 34878 4 FGFGFGGTGK Unmodified 973.46577 0.46576654 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 By MS/MS By MS/MS 2.33 1.15 3 2 2 2 3 6 63.25 63.022 2 1.1838E-05 20183 20211116_3442_TMUAki_TMT10x_S_F4 105.52 32.272 182200000 268250000 1617500 356670000 155940000 216030000 160680000 144220000 135350000 135430000 187250000 169650000 250640000 15247000 355510000 149670000 227140000 161960000 149990000 140650000 132630000 179030000 10 10 2 10 10 10 10 10 10 10 10 108810000 154310000 1577000 206620000 108850000 161080000 97351000 92703000 86559000 84817000 111270000 101320000 144190000 9862600 206410000 104140000 165370000 99014000 97469000 89408000 83162000 106570000 6 6 1 6 6 6 6 6 6 6 6 73389000 113940000 40438 150050000 47085000 54948000 63334000 51517000 48796000 50615000 75986000 68330000 106450000 5384000 149100000 45534000 61766000 62943000 52525000 51243000 49470000 72459000 4 4 1 4 4 4 4 4 4 4 4 9171800000 5287800000 3884000000 5408 2334 5044 29203;29204;29205;29206;29207;29208;29209;29210;29211 34881;34882;34883;34884;34885;34886;34887;34888;34889;34890;34891;34892;34893;34894 34894 14 FGFGFGGTGKK Unmodified 1101.5607 0.56072956 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 1 By MS/MS By MS/MS 4.22 1.31 1 2 2 2 2 5 4 53.14 53.144 3 7.9246E-06 16082 20211116_3442_TMUAki_TMT10x_S_F4 114.86 89.389 119910000 161610000 1436200 263590000 104090000 104540000 94529000 65516000 70886000 63011000 120690000 111650000 151180000 10974000 259320000 99652000 115430000 95653000 68506000 74916000 61643000 114890000 10 10 9 10 10 10 10 10 10 10 10 49511000 64119000 731470 99453000 77361000 68987000 45427000 28248000 31827000 27392000 49134000 46105000 59962000 5176600 98507000 73419000 71243000 47327000 30751000 33588000 26787000 46862000 5 5 5 5 5 5 5 5 5 5 5 70394000 97486000 704770 164130000 26734000 35552000 49102000 37268000 39059000 35620000 71559000 65549000 91214000 5796900 160810000 26233000 44188000 48326000 37755000 41328000 34856000 68024000 5 5 4 5 5 5 5 5 5 5 5 9927300000 5907800000 4019500000 5409 2334 5045 29212;29213;29214;29215;29216;29217;29218;29219;29220 34895;34896;34897;34898;34899;34900;34901;34902;34903;34904 34901 10 FGFPAFSGISR Unmodified 1184.5978 0.59784335 1195 P53004 BLVRA Biliverdin reductase A yes yes 0 0 0 0 By MS/MS 5 0 1 1 72.06 72.071 2 0.055592 22579 20211116_3444_TMUAki_TMT10x_S_F5 60.118 26.998 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5410 1195 5046 29221 34905 34905 1 FGFPEGSVELYAEK Unmodified 1571.7508 0.75077476 783 P23396 RPS3 40S ribosomal protein S3 yes yes 0 0 0 0 By MS/MS By MS/MS 4.38 1.88 2 4 4 5 4 5 5 15 14 72.869 72.846 2;3 1.4197E-33 24891 20211116_3442_TMUAki_TMT10x_S_F4 235.49 212.18 310290000 525010000 1622000 466510000 335030000 483090000 361430000 322390000 311560000 334830000 379100000 288910000 489670000 25191000 480290000 321850000 487510000 363690000 336270000 321540000 326500000 363620000 40 40 17 40 40 40 40 40 40 40 40 188780000 313270000 1005900 280360000 178120000 343610000 215050000 194790000 186080000 199870000 223640000 175770000 292190000 15184000 289280000 171690000 342800000 215300000 205710000 191900000 194990000 214570000 23 23 10 23 23 23 23 23 23 23 23 121510000 211750000 616120 186150000 156910000 139480000 146390000 127600000 125480000 134960000 155470000 113130000 197490000 10007000 191020000 150150000 144710000 148390000 130550000 129630000 131500000 149040000 17 17 7 17 17 17 17 17 17 17 17 38475000000 21359000000 17116000000 5411 783 5047 29222;29223;29224;29225;29226;29227;29228;29229;29230;29231;29232;29233;29234;29235;29236;29237;29238;29239;29240;29241;29242;29243;29244;29245;29246;29247;29248;29249;29250 34906;34907;34908;34909;34910;34911;34912;34913;34914;34915;34916;34917;34918;34919;34920;34921;34922;34923;34924;34925;34926;34927;34928;34929;34930;34931;34932;34933;34934;34935;34936;34937;34938;34939;34940;34941;34942;34943;34944;34945;34946;34947;34948;34949 34939 44 FGFVDAQKEDMPPEHVR Oxidation (M) 2016.9364 0.93636047 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 1 1 By MS/MS By MS/MS 5 0.816 1 1 1 2 1 43.629 43.756 4 8.4291E-07 12206 20211116_3442_TMUAki_TMT10x_S_F4 101.78 92.789 2408600 4054300 9907 4669700 4645600 5655000 3314900 4952400 4701000 3946600 4312400 2242700 3785400 235540 4735100 4421300 5684300 3475000 5040600 4708000 3895900 4172100 2 2 1 2 2 2 2 2 2 2 2 1361700 2220700 9907 2669000 3645700 4589300 2346000 2558100 2673000 2069600 2421400 1267900 2073800 154110 2719900 3463600 4511200 2457700 2688800 2696100 2041400 2343600 1 1 1 1 1 1 1 1 1 1 1 1046900 1833600 0 2000600 999880 1065600 968930 2394300 2028000 1877000 1891100 974770 1711600 81425 2015200 957650 1173100 1017200 2351800 2011900 1854400 1828500 1 1 0 1 1 1 1 1 1 1 1 1188800000 954890000 233950000 5412 1997 5048 29251;29252;29253 34950;34951 34951 2547 2 FGFYEVFK Unmodified 1035.5066 0.50656873 1466 Q00325-2;Q00325 SLC25A3 Phosphate carrier protein, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 3 2.92 2 1 1 2 2 77.274 77.252 2 0.0013201 25135 20211116_3428_TMUAki_TMT10x_P_F1 124.08 77.513 21225000 35262000 0 37254000 21528000 29364000 21258000 14368000 11488000 15196000 22279000 19762000 32911000 1670000 37747000 20629000 30064000 21275000 15390000 12498000 14807000 21157000 3 3 0 3 3 3 3 3 3 3 3 15829000 25643000 0 26657000 16010000 23734000 14935000 10603000 8064900 10834000 15907000 14738000 23932000 1229000 27079000 15318000 24064000 14993000 11450000 8783500 10571000 15102000 2 2 0 2 2 2 2 2 2 2 2 5395600 9618900 0 10597000 5518100 5629600 6322600 3765300 3423400 4362200 6372100 5023800 8979100 440990 10668000 5310700 5999600 6281400 3940300 3714200 4235800 6055700 1 1 0 1 1 1 1 1 1 1 1 2023600000 1395900000 627680000 5413 1466 5049 29254;29255;29256;29257 34952;34953;34954 34952 3 FGGEHVPNSPFQVTALAGDQPSVQPPLR Unmodified 2944.4832 0.48315453 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 69.062 69.039 3;4 4.5358E-34 21371 20211116_3447_TMUAki_TMT10x_S_F8 177.49 168.01 2851600 5136900 0 4580700 3684200 4938500 4233600 3339300 3181500 3405500 3984800 2654800 4791200 128560 4717800 3543700 4973000 4233000 3477800 3311200 3323300 3819100 4 4 0 4 4 4 4 4 4 4 4 1467500 2389700 0 2478200 1871300 3005000 2271500 1738400 1455000 1851500 2102800 1366100 2230200 91927 2529800 1802000 3000300 2257900 1834800 1538900 1803600 2008500 1 1 0 1 1 1 1 1 1 1 1 1384100 2747200 0 2102500 1813000 1933600 1962100 1600900 1726500 1554000 1882000 1288700 2561100 36631 2187900 1741700 1972700 1975100 1643100 1772300 1519700 1810700 3 3 0 3 3 3 3 3 3 3 3 1200100000 662470000 537640000 5414 755 5050 29258;29259 34955;34956;34957;34958 34956 4 FGGGNPELLTQMVSK Unmodified 1576.7919 0.79192806 992 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 By MS/MS 4.5 3.5 1 1 2 72.255 72.105 3 6.7397E-05 25124 20211116_3439_TMUAki_TMT10x_S_F1 86.497 53.967 6415800 10651000 111140 10385000 8663500 5818900 7106000 4562700 3874800 4874600 7077900 5974300 9937800 626520 10545000 8271900 6181300 7189300 4711800 4197000 4747900 6728700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6415800 10651000 111140 10385000 8663500 5818900 7106000 4562700 3874800 4874600 7077900 5974300 9937800 626520 10545000 8271900 6181300 7189300 4711800 4197000 4747900 6728700 2 2 1 2 2 2 2 2 2 2 2 2128900000 0 2128900000 5415 992 5051 29260;29261 34959;34960 34959 2 FGGGNPELLTQMVSK Oxidation (M) 1592.7868 0.78684269 992 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 1 0 By MS/MS 7 0 1 1 58.939 59.454 3 0.00095431 19689 20211116_3446_TMUAki_TMT10x_S_F7 65.511 44.558 3693500 6539900 80007 6084900 4485200 4118500 3468500 5878900 5601800 5210700 5415500 3439600 6100800 391870 6210300 4279900 4356500 3637500 5868400 5598900 5116600 5229900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3693500 6539900 80007 6084900 4485200 4118500 3468500 5878900 5601800 5210700 5415500 3439600 6100800 391870 6210300 4279900 4356500 3637500 5868400 5598900 5116600 5229900 1 1 1 1 1 1 1 1 1 1 1 469330000 0 469330000 5416 992 5051 29262 34961 34961 1276 1 FGGNPGGFGNQGGFGNSR Unmodified 1725.7608 0.76077937 1600 Q13148;Q13148-4 TARDBP TAR DNA-binding protein 43 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 2.69 4 4 4 4 7 9 49.842 49.697 2;3 3.5429E-117 15418 20211116_3429_TMUAki_TMT10x_P_F2 366.19 326.25 44796000 74902000 169700 77238000 68352000 84045000 53671000 73825000 73153000 61463000 65807000 41708000 69900000 3817500 78732000 65155000 84970000 55812000 75206000 73307000 60537000 63709000 17 17 8 17 17 17 17 17 17 17 17 25739000 41270000 95366 42442000 50770000 66897000 39275000 41807000 40809000 34027000 36405000 23964000 38513000 2269700 43581000 48377000 66078000 40487000 43540000 41293000 33553000 35255000 10 10 4 10 10 10 10 10 10 10 10 19057000 33633000 74331 34796000 17582000 17147000 14396000 32017000 32343000 27436000 29403000 17744000 31387000 1547800 35151000 16778000 18891000 15325000 31665000 32014000 26984000 28455000 7 7 4 7 7 7 7 7 7 7 7 9908300000 6625200000 3283000000 5417 1600 5052 29263;29264;29265;29266;29267;29268;29269;29270;29271;29272;29273;29274;29275;29276;29277;29278 34962;34963;34964;34965;34966;34967;34968;34969;34970;34971;34972;34973;34974;34975;34976;34977;34978;34979;34980 34967 19 FGHEFLEFEFRPDGK Unmodified 1853.8737 0.87368386 1309;2405 P61326;P61326-2;Q96A72 MAGOH;MAGOHB Protein mago nashi homolog;Protein mago nashi homolog 2 no no 0 0 0 1 By MS/MS By MS/MS 4.69 1.49 1 2 3 3 2 2 7 6 63.523 63.539 4 2.1164E-19 22034 20211116_3446_TMUAki_TMT10x_S_F7 170.74 134.71 60658000 97628000 561480 91984000 66177000 101870000 63334000 75276000 63303000 69847000 83903000 56480000 91076000 5301000 93865000 63397000 102230000 64391000 77154000 64868000 68440000 80300000 19 19 16 18 18 18 18 18 18 19 19 31693000 50045000 168920 43537000 30296000 72369000 30145000 35939000 29929000 33487000 43315000 29508000 46673000 2436800 44786000 29037000 71128000 30579000 37744000 30667000 32806000 41370000 11 11 8 10 10 11 10 10 10 11 11 28965000 47584000 392560 48447000 35881000 29499000 33190000 39337000 33374000 36360000 40588000 26972000 44404000 2864100 49080000 34361000 31100000 33812000 39410000 34201000 35633000 38930000 8 8 8 8 8 7 8 8 8 8 8 12885000000 5923800000 6961300000 5418 1309;2405 5053 29279;29280;29281;29282;29283;29284;29285;29286;29287;29288;29289;29290;29291 34981;34982;34983;34984;34985;34986;34987;34988;34989;34990;34991;34992;34993;34994;34995;34996;34997;34998;34999 34999 19 FGHYQQAELALQEAIR Unmodified 1872.9482 0.94824579 3146 Q9UJX4;Q9UJX4-3 ANAPC5 Anaphase-promoting complex subunit 5 yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 61.245 61.957 3 4.2901E-05 20194 20211116_3435_TMUAki_TMT10x_P_F7 82.59 69.177 3970000 6028600 98012 5862700 4394700 7748900 4581100 4621900 3844200 4619300 4961300 3697200 5624700 426430 6020900 4224500 7707400 4614300 4856900 3982700 4511500 4751400 1 1 1 1 1 1 1 1 1 1 1 3970000 6028600 98012 5862700 4394700 7748900 4581100 4621900 3844200 4619300 4961300 3697200 5624700 426430 6020900 4224500 7707400 4614300 4856900 3982700 4511500 4751400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 481470000 481470000 0 5419 3146 5054 29292;29293 35000;35001 35001 2 FGIHPVAGR Unmodified 952.52428 0.52428448 1630 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 1.2 0.4 4 1 3 2 34.128 34.079 2;3 6.4362E-06 9152 20211116_3429_TMUAki_TMT10x_P_F2 157.58 100.02 2583000 4174500 16147 4067900 3374600 3251500 2769100 2511300 2725800 2657700 3261900 2404900 3894800 218250 4145300 3220100 3346100 2839100 2595100 2794000 2589600 3130000 4 4 3 4 4 4 4 4 4 4 4 1251100 2056500 11983 2010800 1892600 1986300 1294900 1190700 1365500 1377300 1615900 1165000 1918800 123880 2054200 1800400 2007100 1346900 1256400 1395000 1337500 1551100 2 2 2 2 2 2 2 2 2 2 2 1331900 2118000 4164.3 2057100 1482000 1265200 1474200 1320600 1360300 1280400 1645900 1240000 1976100 94373 2091000 1419700 1339000 1492200 1338700 1399000 1252100 1578900 2 2 1 2 2 2 2 2 2 2 2 537500000 296000000 241510000 5420 1630 5055 29294;29295;29296;29297;29298 35002;35003;35004;35005 35003 4 FGIIMRDPQTEEFK Oxidation (M) 1725.8396 0.83960654 239 O43719 HTATSF1 HIV Tat-specific factor 1 yes yes 0 0 1 1 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 53.969 54.17 3 0.0012131 15634 20211116_3445_TMUAki_TMT10x_S_F6 67.234 47.128 7643400 12550000 66996 12863000 11362000 16661000 9273800 10985000 11578000 9932100 10405000 7117100 11711000 738780 13157000 10845000 16612000 9587400 11424000 11636000 9743600 10073000 2 2 1 2 2 2 2 2 2 2 2 7643400 12550000 66996 12863000 11362000 16661000 9273800 10985000 11578000 9932100 10405000 7117100 11711000 738780 13157000 10845000 16612000 9587400 11424000 11636000 9743600 10073000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 371760000 371760000 0 5421 239 5056 29299;29300 35006;35007;35008 35008 191 3 FGIIMRDPQTEEFK Unmodified 1709.8447 0.84469192 239 O43719 HTATSF1 HIV Tat-specific factor 1 yes yes 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 61.254 61.624 3 4.8591E-10 20001 20211116_3435_TMUAki_TMT10x_P_F7 120.53 101.45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5422 239 5056 29301;29302 35009;35010 35010 2 FGISSVPTK Unmodified 934.51238 0.51238239 1445 P82979 SARNP SAP domain-containing ribonucleoprotein yes yes 0 0 0 0 By MS/MS By MS/MS 4.75 3.27 1 1 2 1 3 52.067 52.029 2 3.3361E-05 16898 20211116_3439_TMUAki_TMT10x_S_F1 121.85 100.95 6883500 11639000 140660 12867000 11877000 12007000 8380100 9134600 9209500 8274800 10577000 6410200 10865000 771720 13027000 11309000 12220000 8708900 9406600 9381400 8117000 10161000 2 2 2 2 2 2 2 2 2 2 2 3896900 6488500 97801 6899700 9100600 9470100 5875700 5583700 5903300 4941800 6081000 3629100 6056000 487110 7048200 8650900 9401600 6129500 5854000 6010700 4852900 5860700 1 1 1 1 1 1 1 1 1 1 1 2986600 5150300 42863 5967000 2776800 2536700 2504400 3550900 3306200 3333000 4496400 2781100 4808800 284620 5978300 2658200 2818600 2579400 3552600 3370600 3264200 4300700 1 1 1 1 1 1 1 1 1 1 1 240810000 166630000 74182000 5423 1445 5057 29303;29304;29305;29306 35011;35012;35013;35014 35012 4 FGIVTSSAGTGTTEDTEAK Unmodified 1870.8796 0.87961668 1445 P82979 SARNP SAP domain-containing ribonucleoprotein yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 1 3 52.546 52.678 3 5.5903E-31 15691 20211116_3433_TMUAki_TMT10x_P_F5 174.18 155.82 2051400 2959700 34343 3823200 1949400 1845200 1927200 3607600 3427200 2921600 3200000 1910300 2764900 200660 3809700 1870700 2041400 2002400 3558400 3412900 2881600 3093900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2051400 2959700 34343 3823200 1949400 1845200 1927200 3607600 3427200 2921600 3200000 1910300 2764900 200660 3809700 1870700 2041400 2002400 3558400 3412900 2881600 3093900 1 1 1 1 1 1 1 1 1 1 1 575190000 0 575190000 5424 1445 5058 29307;29308;29309;29310 35015;35016;35017 35015 3 FGLESHAHTIQICK Unmodified 1639.8141 0.81406049 2241 Q8NE71;Q8NE71-2 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 43.557 43.851 4 7.6471E-14 12916 20211116_3435_TMUAki_TMT10x_P_F7 144.47 108.19 6922600 10683000 58432 14137000 15275000 15100000 8143100 9534900 9472800 8242100 9844000 6445800 9981700 707480 14192000 14468000 15199000 8674000 9936600 9592000 8102900 9484600 5 5 3 5 5 5 5 5 5 5 5 4783900 7355300 47876 9981300 13341000 13386000 6495500 6773600 6516300 5750600 6933900 4454500 6873100 541310 10048000 12621000 13279000 6947200 7190000 6643200 5658500 6676000 3 3 2 3 3 3 3 3 3 3 3 2138700 3328200 10556 4155400 1934200 1713800 1647600 2761300 2956500 2491400 2910000 1991300 3108600 166170 4144300 1846900 1920100 1726800 2746600 2948800 2444400 2808600 2 2 1 2 2 2 2 2 2 2 2 821890000 547540000 274350000 5425 2241 5059 29311;29312;29313;29314 35018;35019;35020;35021;35022 35019 5 FGLGSVAGAVGATAVYPIDLVK Unmodified 2104.1568 0.15684158 3141 Q9UJS0;Q9UJS0-2 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 2 4 3 3 80.318 80.276 2;3 1.5018E-76 29343 20211116_3441_TMUAki_TMT10x_S_F3 274.24 251.32 39934000 67265000 374930 66049000 44844000 55462000 52362000 33729000 35290000 36563000 48016000 37185000 62761000 3684400 67309000 43207000 56666000 52191000 35475000 37100000 35593000 45925000 6 6 5 6 6 6 6 6 6 6 6 21114000 35153000 145630 33500000 18117000 33881000 21910000 16493000 17928000 18302000 24698000 19660000 32795000 1844200 34298000 17476000 34102000 21903000 17700000 18653000 17800000 23616000 3 3 3 3 3 3 3 3 3 3 3 18820000 32112000 229300 32549000 26727000 21581000 30452000 17236000 17362000 18262000 23318000 17525000 29966000 1840100 33010000 25732000 22564000 30288000 17774000 18447000 17793000 22310000 3 3 2 3 3 3 3 3 3 3 3 19972000000 10560000000 9411400000 5426 3141 5060 29315;29316;29317;29318;29319;29320 35023;35024;35025;35026;35027;35028 35028 6 FGLHNFR Unmodified 889.45587 0.45587056 1217 P54132 BLM Bloom syndrome protein yes yes 0 0 0 0 By MS/MS 2 0 1 1 36.871 36.97 3 0.03797 8935 20211116_3440_TMUAki_TMT10x_S_F2 57.335 49.855 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5427 1217 5061 29321 35029 35029 1 FGLNVSSISR Unmodified 1078.5771 0.57710791 1445 P82979 SARNP SAP domain-containing ribonucleoprotein yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 54.081 53.865 2 1.4523E-09 17139 20211116_3429_TMUAki_TMT10x_P_F2 186.92 88.691 25482000 43062000 180620 45144000 39043000 45869000 28315000 43429000 43819000 37028000 39980000 23727000 40190000 2426000 45918000 37174000 46628000 29762000 44087000 43763000 36428000 38686000 8 8 6 8 8 8 8 8 8 8 8 12874000 20647000 52321 22292000 26017000 33819000 17619000 21912000 22071000 18087000 19903000 11988000 19272000 1287700 22798000 24738000 33474000 18449000 22765000 22182000 17822000 19267000 4 4 3 4 4 4 4 4 4 4 4 12608000 22415000 128290 22851000 13026000 12050000 10695000 21517000 21748000 18942000 20077000 11740000 20918000 1138300 23120000 12437000 13155000 11313000 21322000 21582000 18606000 19419000 4 4 3 4 4 4 4 4 4 4 4 2622200000 1565300000 1056900000 5428 1445 5062 29322;29323;29324;29325;29326;29327 35030;35031;35032;35033;35034;35035;35036;35037 35032 8 FGLTTSR Unmodified 780.413 0.41300269 912 P33992 MCM5 DNA replication licensing factor MCM5 yes yes 0 0 0 0 By MS/MS 1 0 1 1 38.331 38.235 2 0.050035 11277 20211116_3439_TMUAki_TMT10x_S_F1 69.093 32.065 1008300 1669800 24672 1899600 1129600 888780 1012500 1107600 1002100 1009900 1322500 939010 1559000 108290 1906600 1081700 972700 1032800 1112200 1031300 990390 1265900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1008300 1669800 24672 1899600 1129600 888780 1012500 1107600 1002100 1009900 1322500 939010 1559000 108290 1906600 1081700 972700 1032800 1112200 1031300 990390 1265900 1 1 1 1 1 1 1 1 1 1 1 19202000 0 19202000 5429 912 5063 29328 35038 35038 1 FGLYLPLFKPSVSTSK Unmodified 1782.992 0.99200808 3141 Q9UJS0;Q9UJS0-2 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 78.217 78.195 3 4.5579E-11 25682 20211116_3436_TMUAki_TMT10x_P_F8 137.19 118.78 24850000 37705000 0 38117000 23092000 33130000 29023000 18282000 19031000 20767000 22335000 23136000 35184000 1808600 38782000 22276000 33725000 28820000 19412000 19916000 20180000 21443000 2 2 0 2 2 2 2 2 2 2 2 15132000 21876000 0 22888000 12710000 21765000 16560000 10730000 11010000 12614000 13248000 14088000 20416000 1154500 23261000 12280000 21994000 16424000 11523000 11523000 12242000 12711000 1 1 0 1 1 1 1 1 1 1 1 9718300 15829000 0 15229000 10382000 11365000 12463000 7551700 8021600 8153500 9086700 9047400 14768000 654080 15520000 9996200 11731000 12396000 7888500 8392800 7938400 8732700 1 1 0 1 1 1 1 1 1 1 1 3090300000 1577200000 1513200000 5430 3141 5064 29329;29330 35039;35040 35039 2 FGMTPSK Unmodified 766.36836 0.36836069 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 42.666 42.796 2 0.060462 11177 20211116_3436_TMUAki_TMT10x_P_F8 64.836 41.28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5431 1235 5065 29331;29332 35041;35042 35041 2 FGNAFHLCR Unmodified 1120.5236 0.52363255 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 By MS/MS 3 0 1 1 43.955 43.989 3 0.00065409 13531 20211116_3430_TMUAki_TMT10x_P_F3 83.168 68.961 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5432 1997 5066 29333 35043 35043 1 FGNDVQHFK Unmodified 1090.5196 0.51959303 1388 P62993 GRB2 Growth factor receptor-bound protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 40.366 40.53 3 0.0062957 9778 20211116_3434_TMUAki_TMT10x_P_F6 66.435 50.21 509800 754500 0 814890 425740 382260 444560 502550 518470 524740 622400 474660 704250 39680 820580 408600 418810 452240 505550 527910 511580 597190 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 509800 754500 0 814890 425740 382260 444560 502550 518470 524740 622400 474660 704250 39680 820580 408600 418810 452240 505550 527910 511580 597190 1 1 0 1 1 1 1 1 1 1 1 30085000 0 30085000 5433 1388 5067 29334;29335 35044;35045 35044 2 FGNEVIPVTVTVK Unmodified 1401.7868 0.78676633 795 P24752 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 4 4 4 4 68.332 68.502 2;3 2.2023E-14 21147 20211116_3447_TMUAki_TMT10x_S_F8 167.44 124.7 22104000 37331000 105590 35989000 25838000 31150000 24962000 24629000 24528000 25308000 27275000 20580000 34829000 1855000 36737000 24751000 31886000 25353000 25390000 25069000 24689000 26226000 5 5 3 5 5 5 5 5 5 5 5 7379300 11404000 0 11342000 7666600 13707000 8225700 7633400 7915400 7707700 8016700 6869900 10641000 496240 11611000 7357400 13681000 8304900 8069800 8069700 7524600 7730300 1 1 0 1 1 1 1 1 1 1 1 14724000 25926000 105590 24647000 18171000 17443000 16737000 16996000 16612000 17600000 19258000 13710000 24187000 1358800 25127000 17393000 18204000 17048000 17321000 16999000 17165000 18496000 4 4 3 4 4 4 4 4 4 4 4 3079200000 1274300000 1804900000 5434 795 5068 29336;29337;29338;29339;29340;29341;29342;29343 35046;35047;35048;35049;35050;35051;35052 35051 7 FGNICVVR Unmodified 963.49602 0.49602082 1798 Q15393;Q15393-3 SF3B3 Splicing factor 3B subunit 3 yes no 0 0 0 0 By MS/MS By matching 2 0 2 1 1 48.887 48.698 2 0.0030327 15091 20211116_3429_TMUAki_TMT10x_P_F2 102.3 88.139 6876600 9547100 155560 12193000 14385000 12874000 7660100 7531800 7707800 7140200 8750500 6404000 8918400 820260 12262000 13634000 12953000 8123100 7915700 7876300 6989700 8409000 2 2 2 2 2 2 2 2 2 2 2 6876600 9547100 155560 12193000 14385000 12874000 7660100 7531800 7707800 7140200 8750500 6404000 8918400 820260 12262000 13634000 12953000 8123100 7915700 7876300 6989700 8409000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 521070000 242220000 278850000 5435 1798 5069 29344;29345 35053;35054 35054 2 FGNPLLVQDVESYDPVLNPVLNR Unmodified 2597.349 0.34895246 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.43 1.92 2 1 1 2 1 5 2 80.599 80.613 3 2.0751E-69 28492 20211116_3446_TMUAki_TMT10x_S_F7 245.61 217.03 11245000 18122000 84469 16665000 12576000 16706000 13712000 11315000 11980000 12203000 14297000 10470000 16904000 815480 17104000 12085000 16896000 13796000 11803000 12346000 11881000 13720000 9 9 4 9 9 9 9 9 9 9 9 6141700 9881100 59060 8940800 5932800 11085000 7192300 6469400 7178500 6918300 7792500 5718800 9216600 434970 9219600 5722200 11057000 7229200 6824100 7325300 6738300 7498100 5 5 2 5 5 5 5 5 5 5 5 5103300 8240800 25409 7723800 6643400 5621000 6519900 4846100 4801900 5284300 6504500 4751100 7687600 380510 7884700 6362800 5838600 6566700 4979400 5020700 5142900 6221900 4 4 2 4 4 4 4 4 4 4 4 10757000000 4027600000 6729500000 5436 1695 5070 29346;29347;29348;29349;29350;29351;29352 35055;35056;35057;35058;35059;35060;35061;35062;35063;35064;35065 35064 11 FGNQADHFLGSLAFAK Unmodified 1721.8526 0.85255449 2804 Q9H488;Q9H488-2 POFUT1 GDP-fucose protein O-fucosyltransferase 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 72.291 72.067 3 5.5422E-29 24507 20211116_3429_TMUAki_TMT10x_P_F2 182.7 164.68 12522000 21197000 15450 19245000 13989000 16873000 14584000 12555000 11577000 11769000 14554000 11658000 19772000 883570 19735000 13417000 17238000 14669000 12960000 12015000 11527000 13948000 3 3 1 3 3 3 3 3 3 3 3 4321900 7051800 15450 6201500 4582500 8433600 4892700 4231800 4249500 4158700 5440800 4024300 6576900 376370 6420000 4402700 8359500 4926700 4512500 4393600 4064700 5211700 1 1 1 1 1 1 1 1 1 1 1 8199900 14146000 0 13043000 9406100 8439500 9691100 8323600 7327100 7610600 9113700 7633400 13195000 507210 13315000 9013900 8879000 9742000 8447300 7620900 7462300 8736300 2 2 0 2 2 2 2 2 2 2 2 1987300000 983150000 1004200000 5437 2804 5071 29353;29354;29355 35066;35067;35068 35066 3 FGNQEDAHEFLR Unmodified 1461.6637 0.66369108 3059 Q9P275 USP36 Ubiquitin carboxyl-terminal hydrolase 36 yes yes 0 0 0 0 By MS/MS 3 0 1 1 42.748 42.794 3 6.2497E-05 13063 20211116_3430_TMUAki_TMT10x_P_F3 96.866 62.097 470850 688900 0 944290 1210500 957770 613470 520490 475840 456310 577860 438310 643780 37273 945490 1144900 965050 649230 549340 493720 448300 554280 1 1 0 1 1 1 1 1 1 1 1 470850 688900 0 944290 1210500 957770 613470 520490 475840 456310 577860 438310 643780 37273 945490 1144900 965050 649230 549340 493720 448300 554280 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35762000 35762000 0 5438 3059 5072 29356 35069 35069 1 FGPALSVK Unmodified 817.46979 0.46978929 634 P11940;P11940-2;Q9H361 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 2.8 2.64 2 2 1 2 3 53.471 53.31 2 0.0018374 16919 20211116_3429_TMUAki_TMT10x_P_F2 116.9 17.529 24972000 43739000 668590 41664000 42799000 44868000 28859000 43099000 40901000 35337000 39314000 23256000 40805000 2943100 42698000 40727000 45471000 30375000 43677000 41026000 34832000 37974000 5 5 5 5 5 5 5 5 5 5 5 11381000 19228000 167160 18388000 28660000 31212000 16011000 20337000 19750000 16254000 18201000 10598000 17938000 1341400 19010000 27173000 30761000 17018000 21104000 19873000 16043000 17605000 2 2 2 2 2 2 2 2 2 2 2 13591000 24511000 501420 23276000 14139000 13656000 12848000 22762000 21151000 19083000 21114000 12658000 22867000 1601700 23688000 13555000 14710000 13356000 22573000 21153000 18789000 20369000 3 3 3 3 3 3 3 3 3 3 3 1067400000 519640000 547770000 5439 634 5073 29357;29358;29359;29360;29361 35070;35071;35072;35073;35074 35071 5 FGPLTPELMVPR Unmodified 1355.7271 0.72714296 990 P40937;P40937-2 RFC5 Replication factor C subunit 5 yes no 0 0 0 0 By MS/MS By MS/MS 3 2.53 1 3 1 3 2 76.12 76.073 2 6.718E-06 26233 20211116_3429_TMUAki_TMT10x_P_F2 105.2 87.035 2489900 4364300 28922 4265700 3685500 2550100 3229200 2300300 1993100 2509200 2905200 2318600 4072000 250130 4333000 3524100 2698100 3261100 2357600 2114100 2442000 2774300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2489900 4364300 28922 4265700 3685500 2550100 3229200 2300300 1993100 2509200 2905200 2318600 4072000 250130 4333000 3524100 2698100 3261100 2357600 2114100 2442000 2774300 1 1 1 1 1 1 1 1 1 1 1 821710000 586640000 235070000 5440 990 5074 29362;29363;29364;29365;29366 35075;35076;35077 35075 3 FGPLTPELMVPR Oxidation (M) 1371.7221 0.72205759 990 P40937;P40937-2 RFC5 Replication factor C subunit 5 yes no 0 0 1 0 By MS/MS By matching 7.67 0.471 1 2 2 1 68.452 68.613 2 0.00053222 21706 20211116_3436_TMUAki_TMT10x_P_F8 89.886 69.889 9816500 16253000 116130 14590000 10574000 22358000 11578000 14455000 13891000 14096000 14223000 9141000 15160000 932700 15117000 10171000 22120000 11763000 15085000 14043000 13781000 13711000 2 2 2 2 2 2 2 2 2 2 2 9816500 16253000 116130 14590000 10574000 22358000 11578000 14455000 13891000 14096000 14223000 9141000 15160000 932700 15117000 10171000 22120000 11763000 15085000 14043000 13781000 13711000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2610800000 1665200000 945640000 5441 990 5074 29367;29368;29369 35078;35079 35079 1273 2 FGPLVEQGQSR Unmodified 1216.62 0.62003536 48 CON__Q03247 yes yes 0 0 0 0 By MS/MS 6 0 1 1 46.344 46.507 2 0.045875 12409 20211116_3445_TMUAki_TMT10x_S_F6 55.721 42.213 + 3175800 5890800 221370 5283100 2894700 2888300 2779200 7978500 9501400 6441400 5737800 2958600 5494500 465670 5396800 2786100 3204500 3033200 7809100 9238400 6354300 5651500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3175800 5890800 221370 5283100 2894700 2888300 2779200 7978500 9501400 6441400 5737800 2958600 5494500 465670 5396800 2786100 3204500 3033200 7809100 9238400 6354300 5651500 1 1 1 1 1 1 1 1 1 1 1 139770000 0 139770000 5442 48 5075 29370 35080 35080 1 FGPYESYDSR Unmodified 1219.5146 0.51456723 1915 Q5BKZ1 ZNF326 DBIRD complex subunit ZNF326 yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 45.481 45.595 2 8.333E-10 12656 20211116_3431_TMUAki_TMT10x_P_F4 192.6 177.84 13158000 21342000 81917 25045000 31003000 28085000 17204000 21918000 23122000 16890000 20096000 12251000 19928000 1214300 25334000 29372000 28285000 18356000 22446000 23156000 16703000 19480000 5 5 2 5 5 5 5 5 5 5 5 9351600 14441000 81917 17292000 27559000 25106000 14064000 15974000 16654000 12384000 14271000 8706600 13486000 948010 17556000 26080000 24889000 15051000 16594000 16744000 12243000 13841000 4 4 2 4 4 4 4 4 4 4 4 3806700 6900500 0 7752800 3443800 2978800 3140700 5944700 6468300 4505700 5825100 3544100 6442100 266320 7777600 3291600 3395700 3304600 5851400 6411900 4459700 5639200 1 1 0 1 1 1 1 1 1 1 1 885690000 452160000 433530000 5443 1915 5076 29371;29372;29373 35081;35082;35083;35084;35085 35084 5 FGPYYTEPVIAGLDPK Unmodified 1765.8927 0.89268797 1112 P49720 PSMB3 Proteasome subunit beta type-3 yes yes 0 0 0 0 By MS/MS 7 0 1 1 77.527 77.59 2 0.00052577 27248 20211116_3446_TMUAki_TMT10x_S_F7 74.841 54.141 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5444 1112 5077 29374 35086 35086 1 FGQAATMEGIGAIGGTPPAFNR Oxidation (M) 2178.0528 0.052787212 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 1 0 By MS/MS By MS/MS 6.4 2.24 2 3 4 6 8 7 66.137 66.291 2;3;4 2.327E-35 20020 20211116_3436_TMUAki_TMT10x_P_F8 196.41 185.09 55266000 95534000 503310 85628000 67668000 97715000 67997000 70602000 70222000 67846000 74681000 51457000 89106000 4640400 88235000 64884000 98191000 69024000 73069000 71500000 66376000 71904000 22 22 12 22 22 22 22 22 22 22 22 31280000 52436000 177240 47009000 37013000 70790000 40800000 41141000 42171000 39592000 42222000 29122000 48908000 2344100 48696000 35564000 69983000 41230000 43279000 42843000 38731000 40729000 10 10 3 10 10 10 10 10 10 10 10 23986000 43098000 326080 38619000 30655000 26925000 27197000 29461000 28051000 28254000 32458000 22335000 40198000 2296300 39539000 29320000 28208000 27794000 29790000 28656000 27644000 31175000 12 12 9 12 12 12 12 12 12 12 12 63589000000 36911000000 26679000000 5445 1779 5078 29375;29376;29377;29378;29379;29380;29381;29382;29383;29384;29385;29386;29387;29388;29389 35087;35088;35089;35090;35091;35092;35093;35094;35095;35096;35097;35098;35099;35100;35101;35102;35103;35104;35105;35106;35107;35108 35095 2385 22 FGQAATMEGIGAIGGTPPAFNR Unmodified 2162.0579 0.05787259 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 0 By MS/MS By MS/MS 3.4 3.04 4 3 3 5 5 72.259 72.18 2;3 1.1597E-128 22987 20211116_3428_TMUAki_TMT10x_P_F1 365.74 343.69 57098000 98051000 440490 86464000 69091000 89820000 73313000 57239000 49273000 57705000 72760000 53162000 91449000 4151400 89076000 66338000 90563000 73399000 59855000 52012000 56339000 69461000 17 17 6 17 17 17 17 17 17 17 17 32442000 54910000 348870 49328000 34453000 61274000 43370000 29799000 25475000 31389000 39181000 30207000 51216000 2313900 50896000 33266000 60978000 42972000 31934000 27186000 30590000 37373000 9 9 4 9 9 9 9 9 9 9 9 24657000 43141000 91621 37136000 34638000 28545000 29943000 27440000 23798000 26317000 33578000 22955000 40233000 1837600 38180000 33072000 29585000 30428000 27921000 24826000 25748000 32089000 8 8 2 8 8 8 8 8 8 8 8 25257000000 13209000000 12048000000 5446 1779 5078 29390;29391;29392;29393;29394;29395;29396;29397;29398;29399 35109;35110;35111;35112;35113;35114;35115;35116;35117;35118;35119;35120;35121;35122;35123;35124;35125 35111 17 FGQFCTVGILINSGSR Unmodified 1754.8774 0.87738903 1559 Q10713 PMPCA Mitochondrial-processing peptidase subunit alpha yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 4 2 2 76.459 76.478 2;3 1.4568E-15 25512 20211116_3433_TMUAki_TMT10x_P_F5 158.47 137.6 4376600 7461500 22025 6514700 4701300 9058900 5524900 4792000 4232600 4830300 5228700 4075200 6958800 386630 6751000 4529800 8975800 5521100 5088700 4397900 4715900 5013100 2 2 1 2 2 2 2 2 2 2 2 4376600 7461500 22025 6514700 4701300 9058900 5524900 4792000 4232600 4830300 5228700 4075200 6958800 386630 6751000 4529800 8975800 5521100 5088700 4397900 4715900 5013100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 813290000 452860000 360430000 5447 1559 5079 29400;29401;29402;29403 35126;35127;35128 35127 3 FGQGDLPKPINSDFR Unmodified 1689.8475 0.84746911 1122 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 55.643 55.977 3 1.3875E-05 18264 20211116_3446_TMUAki_TMT10x_S_F7 100.21 81.794 29037000 52028000 291830 52402000 37810000 42396000 30974000 41766000 40927000 39505000 41144000 27037000 48549000 2632300 53283000 36089000 43793000 32084000 42429000 41209000 38675000 39683000 6 6 4 6 6 6 6 6 6 6 6 9780200 17025000 60468 18372000 17083000 23437000 13608000 14831000 13465000 13501000 13422000 9105800 15891000 837550 18723000 16288000 23370000 13981000 15474000 13703000 13241000 12949000 2 2 1 2 2 2 2 2 2 2 2 19257000 35002000 231360 34030000 20727000 18959000 17366000 26935000 27462000 26004000 27722000 17931000 32657000 1794700 34560000 19801000 20423000 18103000 26955000 27506000 25435000 26734000 4 4 3 4 4 4 4 4 4 4 4 1769500000 938790000 830730000 5448 1122 5080 29404;29405;29406;29407 35129;35130;35131;35132;35133;35134 35131 6 FGQGGAGPVGGQGPR Unmodified 1340.6585 0.65854613 777 P23246 SFPQ Splicing factor, proline- and glutamine-rich yes yes 0 0 0 0 By MS/MS By MS/MS 5.2 2.96 3 2 1 4 5 5 29.659 29.754 2;3 1.81E-44 7648 20211116_3444_TMUAki_TMT10x_S_F5 275.84 219.94 6607900 11066000 72396 12515000 13067000 11550000 7728700 9294900 10244000 7906300 10155000 6152700 10331000 642180 12650000 12396000 11775000 8196600 9522700 10308000 7778900 9799200 7 7 3 7 7 7 7 7 7 7 7 3758600 6128600 44085 6885300 10213000 9163300 4931100 4999600 5438100 4435200 5461800 3499600 5721500 398940 7004700 9659600 9100900 5293700 5276500 5511000 4354900 5268100 4 4 2 4 4 4 4 4 4 4 4 2849300 4937600 28311 5629400 2854500 2386700 2797700 4295300 4805700 3471100 4693500 2653100 4609900 243230 5645500 2736100 2674300 2902900 4246200 4797100 3424000 4531100 3 3 1 3 3 3 3 3 3 3 3 1706500000 867290000 839180000 5449 777 5081 29408;29409;29410;29411;29412;29413;29414;29415;29416;29417 35135;35136;35137;35138;35139;35140;35141;35142;35143 35140 9 FGQMLGSNMTEFHSQISK Oxidation (M) 2056.9346 0.93464591 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 1 0 By MS/MS 8 0 1 1 55.618 55.751 3 0.00024165 16451 20211116_3436_TMUAki_TMT10x_P_F8 63.302 53.245 1592500 2680100 22892 2953100 2375600 3465700 2095000 1668000 1402700 1660000 2031900 1483000 2501800 164330 3001000 2272200 3458600 2118300 1786400 1479700 1621600 1940600 1 1 1 1 1 1 1 1 1 1 1 1592500 2680100 22892 2953100 2375600 3465700 2095000 1668000 1402700 1660000 2031900 1483000 2501800 164330 3001000 2272200 3458600 2118300 1786400 1479700 1621600 1940600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 226950000 226950000 0 5450 1695 5082 29418 35144 35144 2277 1 FGSEFSPELQASFQK Unmodified 1700.8046 0.80460124 53 CON__Q3SX09 yes yes 0 0 0 0 By MS/MS By MS/MS 6 1 1 2 3 4 4 6 71.948 72.025 2;3 4.8587E-72 24901 20211116_3446_TMUAki_TMT10x_S_F7 322.77 287.36 + 44673000 78704000 589640 71449000 55696000 84976000 71265000 107530000 120260000 125460000 85877000 41597000 73412000 4082800 73604000 53810000 86241000 72990000 108730000 118980000 121790000 83907000 14 14 8 14 14 14 14 14 14 14 14 15923000 26681000 281650 25809000 24763000 48475000 29354000 38670000 42082000 44879000 29946000 14827000 24893000 1653900 26730000 23873000 47764000 29929000 39998000 41823000 43576000 29263000 5 5 3 5 5 5 5 5 5 5 5 28751000 52023000 308000 45639000 30933000 36501000 41911000 68862000 78181000 80578000 55932000 26770000 48519000 2429000 46874000 29937000 38476000 43061000 68732000 77159000 78214000 54644000 9 9 5 9 9 9 9 9 9 9 9 9815700000 3940400000 5875300000 5451 53 5083 29419;29420;29421;29422;29423;29424;29425;29426;29427;29428 35145;35146;35147;35148;35149;35150;35151;35152;35153;35154;35155;35156;35157;35158 35157 14 FGSLLPIHPVTSG Unmodified 1323.7187 0.71868677 1780 Q15257;Q15257-4;Q15257-3;Q15257-2 PPP2R4 Serine/threonine-protein phosphatase 2A activator yes no 0 0 0 0 By MS/MS By MS/MS 2.8 2.64 2 2 1 3 2 71.909 71.787 2 0.00016934 24471 20211116_3429_TMUAki_TMT10x_P_F2 95.311 73.163 15055000 24577000 19419 24824000 17244000 23278000 17572000 15721000 13692000 15508000 19355000 14018000 22934000 1241300 25284000 16541000 23639000 17687000 16359000 14300000 15155000 18496000 5 5 1 5 5 5 5 5 5 5 5 9268300 15102000 0 14873000 10101000 17513000 11385000 9603500 8260900 9406500 11845000 8629400 14091000 735650 15229000 9714300 17500000 11385000 10157000 8667900 9195000 11315000 3 3 0 3 3 3 3 3 3 3 3 5787100 9475000 19419 9951400 7143900 5765000 6186400 6117000 5431300 6101600 7510100 5388400 8843000 505620 10056000 6826300 6139200 6301800 6201100 5632200 5959800 7180400 2 2 1 2 2 2 2 2 2 2 2 2911700000 1859200000 1052500000 5452 1780 5084 29429;29430;29431;29432;29433 35159;35160;35161;35162;35163;35164 35161 6 FGSNINLEADES Unmodified 1294.5677 0.56772501 2906 Q9NQP4 PFDN4 Prefoldin subunit 4 yes yes 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 2 3 62.377 62.077 2 8.358E-05 21014 20211116_3439_TMUAki_TMT10x_S_F1 99.815 91.274 26194000 43539000 279260 42311000 31321000 37164000 29483000 29042000 25447000 28270000 34839000 24391000 40622000 2461300 43174000 30000000 37995000 29877000 29914000 26398000 27641000 33317000 8 8 6 8 8 8 8 8 8 8 8 9897300 15670000 144150 15836000 13191000 21193000 13726000 11373000 9705200 10551000 13086000 9216400 14622000 1001000 16224000 12670000 21039000 13770000 12034000 10169000 10338000 12519000 3 3 3 3 3 3 3 3 3 3 3 16297000 27870000 135110 26475000 18129000 15971000 15757000 17669000 15742000 17719000 21753000 15175000 26000000 1460200 26950000 17329000 16956000 16107000 17880000 16229000 17303000 20799000 5 5 3 5 5 5 5 5 5 5 5 2190900000 1122500000 1068400000 5453 2906 5085 29434;29435;29436;29437;29438 35165;35166;35167;35168;35169;35170;35171;35172 35168 8 FGTINIVHPK Unmodified 1124.6342 0.63422886 3335 Q9Y617;Q9Y617-2 PSAT1 Phosphoserine aminotransferase yes no 0 0 0 0 By MS/MS By MS/MS 3.6 2.24 2 2 1 2 3 49.666 49.431 3 0.00084764 16905 20211116_3441_TMUAki_TMT10x_S_F3 82.008 57.217 15063000 23461000 108420 25042000 33644000 35850000 19819000 25026000 24798000 21278000 23018000 14026000 21898000 1572400 25597000 31916000 35612000 20980000 25879000 24946000 20935000 22260000 4 4 3 4 4 4 4 4 4 4 4 13166000 20376000 62369 21772000 31291000 33507000 18107000 20741000 20485000 17459000 19338000 12259000 19018000 1365800 22288000 29673000 33124000 19130000 21634000 20695000 17187000 18690000 3 3 2 3 3 3 3 3 3 3 3 1897700 3085600 46055 3270000 2352900 2342700 1711800 4285100 4312900 3818100 3680200 1767300 2879900 206630 3309000 2242800 2487400 1850400 4244800 4251300 3748200 3569700 1 1 1 1 1 1 1 1 1 1 1 3954100000 3621600000 332520000 5454 3335 5086 29439;29440;29441;29442;29443 35173;35174;35175;35176;35177;35178 35177 6 FGTTAVPTYQVGR Unmodified 1395.7147 0.71466402 2537 Q96PZ0;Q96PZ0-2 PUS7 Pseudouridylate synthase 7 homolog yes no 0 0 0 0 By MS/MS By matching 1 0 2 1 1 51.289 51.153 2 7.9066E-09 14521 20211116_3428_TMUAki_TMT10x_P_F1 126.66 100.06 1397100 2309900 0 2264500 3004400 3938800 2106200 2139700 2291800 1888700 2080000 1300700 2155300 126710 2338400 2857400 3868900 2189100 2258800 2315900 1855000 2013000 1 1 0 1 1 1 1 1 1 1 1 1397100 2309900 0 2264500 3004400 3938800 2106200 2139700 2291800 1888700 2080000 1300700 2155300 126710 2338400 2857400 3868900 2189100 2258800 2315900 1855000 2013000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 198580000 151040000 47539000 5455 2537 5087 29444;29445 35179 35179 1 FGTTVPFTSR Unmodified 1111.5662 0.56620887 3039 Q9NZW5 MPP6 MAGUK p55 subfamily member 6 yes yes 0 0 0 0 By MS/MS 2 0 1 1 53.16 52.977 2 0.0053029 15519 20211116_3440_TMUAki_TMT10x_S_F2 69.812 39.242 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5456 3039 5088 29446 35180 35180 1 FGTVLTEHVAAAELGAR Unmodified 1740.9159 0.91588303 224 O43598;O43598-2 DNPH1 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 yes no 0 0 0 0 By MS/MS 6 0 1 1 60.427 60.433 3 0.0011609 18116 20211116_3445_TMUAki_TMT10x_S_F6 66.068 41.653 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5457 224 5089 29447 35181 35181 1 FGVEQDVDMVFASFIR Oxidation (M) 1874.8873 0.88728501 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 1 0 By MS/MS By MS/MS 4.57 1.84 2 1 1 2 1 3 4 81.622 81.625 3 3.4039E-05 28934 20211116_3446_TMUAki_TMT10x_S_F7 84.874 63.644 1742400 2771000 0 2638700 1999900 3234400 2296000 1803700 2030500 2023900 2152400 1622000 2585100 109710 2710100 1922600 3226100 2305200 1912700 2081700 1967600 2072600 4 4 0 4 4 4 4 4 4 4 4 1025200 1538600 0 1493500 1058400 2234300 1290300 975340 1108500 1154500 1172000 954320 1435500 55471 1537800 1018700 2202200 1291100 1060600 1138000 1120200 1128600 2 2 0 2 2 2 2 2 2 2 2 717200 1232400 0 1145200 941530 1000100 1005700 828370 921990 869380 980350 667720 1149600 54241 1172300 903850 1023900 1014100 852120 943700 847390 943900 2 2 0 2 2 2 2 2 2 2 2 647140000 400570000 246570000 5458 670;671 5090 29448;29449;29450;29451;29452;29453;29454 35182;35183;35184;35185;35186 35186 736 5 FGVEQDVDMVFASFIRK Oxidation (M) 2002.9822 0.98224803 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 1 1 By MS/MS 8 0 1 1 79.856 79.842 3 0.0053106 25722 20211116_3447_TMUAki_TMT10x_S_F8 56.215 30.778 3267500 5163000 0 4550900 4550500 3526100 4245500 4114400 5435000 4769700 4528800 3041700 4815300 211940 4670600 4350600 3668600 4359100 4173100 5445000 4631300 4396800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3267500 5163000 0 4550900 4550500 3526100 4245500 4114400 5435000 4769700 4528800 3041700 4815300 211940 4670600 4350600 3668600 4359100 4173100 5445000 4631300 4396800 1 1 0 1 1 1 1 1 1 1 1 272800000 0 272800000 5459 670;671 5091 29455 35187 35187 736 1 FGVGDDDDFRDQGLTRPK Unmodified 2036.9552 0.95518166 1963 Q68CQ4 DIEXF Digestive organ expansion factor homolog yes yes 0 0 0 2 By MS/MS 5 0 1 1 47.957 48.129 4 0.095857 13921 20211116_3433_TMUAki_TMT10x_P_F5 36.744 27.214 6668500 10118000 0 17347000 22272000 16181000 10286000 7847500 8918200 6772400 9854200 6208900 9468300 758480 17169000 21053000 16369000 11018000 8367200 9165800 6658600 9477000 1 1 0 1 1 1 1 1 1 1 1 6668500 10118000 0 17347000 22272000 16181000 10286000 7847500 8918200 6772400 9854200 6208900 9468300 758480 17169000 21053000 16369000 11018000 8367200 9165800 6658600 9477000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 237600000 237600000 0 5460 1963 5092 29456 35188 35188 1 FGVIFAGAQK Unmodified 1036.5706 0.57056597 3335 Q9Y617;Q9Y617-2 PSAT1 Phosphoserine aminotransferase yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 2 4 4 2 66.378 66.17 2;3 2.2783E-09 20945 20211116_3431_TMUAki_TMT10x_P_F4 147.19 119.44 43261000 74236000 395230 60797000 81890000 76903000 56289000 73460000 65715000 59859000 67308000 40283000 69220000 4459400 63213000 77898000 77273000 58727000 74456000 66498000 59022000 64881000 4 4 3 4 4 4 4 4 4 4 4 17614000 30459000 63333 26311000 33649000 54922000 28944000 33430000 30085000 27480000 29322000 16401000 28406000 1707400 27562000 32148000 53703000 29640000 34895000 30529000 27083000 28310000 2 2 1 2 2 2 2 2 2 2 2 25647000 43776000 331900 34486000 48241000 21981000 27346000 40031000 35631000 32380000 37986000 23882000 40813000 2752000 35651000 45750000 23570000 29087000 39560000 35969000 31939000 36571000 2 2 2 2 2 2 2 2 2 2 2 3196900000 1743000000 1453800000 5461 3335 5093 29457;29458;29459;29460;29461;29462 35189;35190;35191;35192;35193;35194 35191 6 FGVLFRDDK Unmodified 1095.5713 0.57129425 3055 Q9P1F3 ABRACL Costars family protein ABRACL yes yes 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 56.05 56.089 3 0.00099468 16077 20211116_3447_TMUAki_TMT10x_S_F8 92.445 28.711 16334000 25997000 413290 32317000 23762000 21488000 16551000 15565000 11406000 14080000 20191000 15212000 24281000 1843400 32360000 22628000 22426000 17006000 16080000 12141000 13812000 19206000 2 2 2 2 2 2 2 2 2 2 2 7518800 11754000 140350 14663000 16051000 15153000 9423000 7136900 5346600 6398800 9200000 7001800 10978000 873660 14761000 15232000 15226000 9778600 7638800 5754400 6279800 8755600 1 1 1 1 1 1 1 1 1 1 1 8815300 14243000 272940 17653000 7711600 6335400 7127600 8428200 6059700 7680700 10991000 8210000 13303000 969760 17599000 7396100 7199300 7227300 8441200 6386400 7532200 10450000 1 1 1 1 1 1 1 1 1 1 1 1483500000 621000000 862520000 5462 3055 5094 29463;29464;29465 35195;35196;35197 35197 3 FGVPVIADGGIQNVGHIAK Unmodified 1891.0316 0.031581485 640 P12268 IMPDH2 Inosine-5'-monophosphate dehydrogenase 2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 66.447 66.404 3 5.9914E-51 20698 20211116_3428_TMUAki_TMT10x_P_F1 230.93 209.68 27443000 50410000 380520 35056000 33695000 54225000 37943000 42753000 42828000 40953000 42342000 25554000 46980000 2591200 37134000 32430000 53800000 38417000 43993000 43339000 40071000 40860000 9 9 6 9 9 9 9 9 9 9 9 14670000 26069000 290720 18495000 16093000 35962000 21111000 22558000 22079000 21364000 22574000 13662000 24297000 1507100 19665000 15574000 35257000 21182000 23576000 22436000 20915000 21761000 5 5 5 5 5 5 5 5 5 5 5 12773000 24340000 89808 16560000 17602000 18262000 16832000 20194000 20749000 19589000 19767000 11892000 22683000 1084100 17469000 16856000 18543000 17235000 20417000 20902000 19156000 19099000 4 4 1 4 4 4 4 4 4 4 4 3055900000 1646100000 1409800000 5463 640 5095 29466;29467;29468;29469 35198;35199;35200;35201;35202;35203;35204;35205;35206 35199 9 FGVQTDRQDK Unmodified 1192.5836 0.58364985 1699 Q14247;Q14247-3;Q14247-2 CTTN Src substrate cortactin yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 32.892 32.877 3 0.059072 7854 20211116_3433_TMUAki_TMT10x_P_F5 43.501 21.455 632100 1136500 4080.8 1019100 1258500 1196400 732500 570830 626540 552700 873560 588580 1060000 64982 1050600 1193700 1193800 767220 611410 650800 540540 835040 1 1 1 1 1 1 1 1 1 1 1 632100 1136500 4080.8 1019100 1258500 1196400 732500 570830 626540 552700 873560 588580 1060000 64982 1050600 1193700 1193800 767220 611410 650800 540540 835040 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 46844000 46844000 0 5464 1699 5096 29470;29471 35207 35207 1 FGVSSSSSGPSQTLTSTGNFK Unmodified 2074.9807 0.98072771 1121 P49790;P49790-2;P49790-3 NUP153 Nuclear pore complex protein Nup153 yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 57.128 57.017 3 1.2171E-10 17189 20211116_3440_TMUAki_TMT10x_S_F2 116.13 105.79 2505100 4365200 46354 4733800 3597800 4926900 2863600 4428300 4349800 3890900 3886000 2332800 4074500 266190 4806100 3434100 4996100 2989000 4511400 4343700 3822200 3763100 2 2 2 2 2 2 2 2 2 2 2 1393400 2399600 16731 2576200 2365500 3843400 1945100 2400300 2358100 2136200 1966800 1297500 2239800 144730 2634600 2258600 3804800 2007800 2505400 2367000 2097200 1909400 1 1 1 1 1 1 1 1 1 1 1 1111700 1965500 29624 2157600 1232300 1083600 918460 2028000 1991700 1754600 1919200 1035300 1834800 121470 2171500 1175500 1191300 981260 2006100 1976700 1724900 1853600 1 1 1 1 1 1 1 1 1 1 1 604990000 360160000 244830000 5465 1121 5097 29472;29473 35208;35209 35209 2 FGVVLDEIKPSSAPELQAVR Unmodified 2154.1685 0.1684689 119 O14579;O14579-3;O14579-2 COPE Coatomer subunit epsilon yes no 0 0 0 1 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 72.903 73.064 3 2.3138E-24 25307 20211116_3446_TMUAki_TMT10x_S_F7 166.38 148.29 25058000 41970000 183970 39015000 29739000 37123000 28894000 23457000 22086000 25276000 31327000 23332000 39151000 2213000 39982000 28499000 37628000 29142000 24593000 23095000 24611000 29934000 4 4 2 4 4 4 4 4 4 4 4 13338000 21984000 183970 19834000 13257000 24591000 14346000 11355000 10832000 12921000 16444000 12420000 20506000 1276100 20457000 12750000 24461000 14386000 12260000 11372000 12555000 15689000 2 2 2 2 2 2 2 2 2 2 2 11720000 19986000 0 19180000 16482000 12532000 14548000 12102000 11255000 12355000 14883000 10912000 18646000 936890 19525000 15749000 13168000 14755000 12334000 11723000 12056000 14245000 2 2 0 2 2 2 2 2 2 2 2 2766200000 2043200000 723010000 5466 119 5098 29474;29475;29476 35210;35211;35212;35213 35212 4 FGVVVVGVGR Unmodified 987.58655 0.58655038 1195 P53004 BLVRA Biliverdin reductase A yes yes 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 58.316 58.168 2 3.1887E-08 19406 20211116_3430_TMUAki_TMT10x_P_F3 163.34 133.77 24595000 39082000 111760 40799000 29528000 38253000 27503000 28635000 27486000 27878000 31352000 22900000 36474000 2065300 41462000 28259000 38910000 28003000 29577000 28100000 27258000 30125000 4 4 2 4 4 4 4 4 4 4 4 12750000 19530000 0 20844000 16811000 26133000 15326000 14833000 14182000 14195000 15542000 11871000 18229000 966970 21251000 16072000 26043000 15588000 15632000 14526000 13890000 14951000 2 2 0 2 2 2 2 2 2 2 2 11844000 19552000 111760 19955000 12717000 12119000 12177000 13802000 13304000 13682000 15810000 11029000 18246000 1098300 20211000 12187000 12867000 12415000 13945000 13574000 13368000 15174000 2 2 2 2 2 2 2 2 2 2 2 2057800000 1158400000 899430000 5467 1195 5099 29477;29478;29479;29480;29481 35214;35215;35216;35217;35218 35215 5 FGWDCHGLPVEYEIDK Unmodified 1963.8774 0.87744861 1002 P41252 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 70.441 70.429 3 1.5441E-05 21935 20211116_3444_TMUAki_TMT10x_S_F5 94.461 78.154 18549000 28217000 223840 29916000 23051000 21860000 22745000 11671000 10690000 13910000 20395000 17273000 26336000 1809500 30279000 22108000 22538000 22714000 12447000 11747000 13493000 19374000 5 5 5 5 5 5 5 5 5 5 5 8161100 12373000 40499 13730000 9848700 12962000 10823000 4871700 4551400 5992300 9039500 7599100 11551000 737990 13899000 9470400 13070000 10733000 5395000 5064000 5806200 8581100 2 2 2 2 2 2 2 2 2 2 2 10388000 15844000 183340 16187000 13202000 8898500 11922000 6799300 6138200 7917900 11356000 9673800 14786000 1071500 16380000 12638000 9467500 11981000 7052500 6682800 7687000 10793000 3 3 3 3 3 3 3 3 3 3 3 2364200000 1305100000 1059100000 5468 1002 5100 29482;29483;29484;29485 35219;35220;35221;35222;35223 35222 5 FGYHIIMVEGR Oxidation (M) 1336.6598 0.65979168 3222 Q9Y237;Q9Y237-2 PIN4 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 yes no 0 0 1 0 By MS/MS By MS/MS 6.6 1.85 1 2 2 2 3 47.171 47.438 3 0.00060891 14800 20211116_3446_TMUAki_TMT10x_S_F7 80.706 63.339 9902300 17328000 78686 18043000 17945000 20168000 12562000 14022000 12849000 12246000 14428000 9220400 16172000 984570 18388000 17074000 20277000 13033000 14513000 13115000 12033000 13870000 7 7 4 7 7 7 7 7 7 7 7 6170100 10647000 63172 11514000 14434000 16700000 9156600 8852300 8140000 7815400 8850100 5745300 9937600 671200 11762000 13710000 16517000 9532400 9365500 8350700 7675700 8515300 4 4 2 4 4 4 4 4 4 4 4 3732200 6681400 15513 6529400 3511100 3467600 3405700 5169500 4709000 4430200 5578400 3475100 6233900 313380 6626000 3364400 3759700 3500400 5148000 4764400 4357200 5354400 3 3 2 3 3 3 3 3 3 3 3 1600400000 969720000 630720000 5469 3222 5101 29486;29487;29488;29489;29490 35224;35225;35226;35227;35228;35229;35230;35231 35229 3212 8 FGYHIIMVEGR Unmodified 1320.6649 0.66487706 3222 Q9Y237;Q9Y237-2 PIN4 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 yes no 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 52.759 52.759 3 8.6783E-07 15280 20211116_3436_TMUAki_TMT10x_P_F8 128.03 107.75 2580500 4375000 154690 4610300 3600600 3777500 3313900 2962800 2374800 2684600 3204900 2403800 4083200 372390 4674100 3454600 3881300 3347400 3045100 2486500 2633400 3066000 2 2 2 2 2 2 2 2 2 2 2 1245500 2240000 54543 2079300 2076600 2661500 1901000 1572200 1201500 1339200 1578100 1160100 2089600 165730 2141300 1990000 2651000 1915800 1646500 1266300 1317600 1510700 1 1 1 1 1 1 1 1 1 1 1 1335000 2134900 100150 2531000 1524000 1115900 1412900 1390500 1173300 1345400 1626800 1243700 1993600 206660 2532900 1464600 1230300 1431600 1398600 1220200 1315800 1555300 1 1 1 1 1 1 1 1 1 1 1 661750000 354790000 306960000 5470 3222 5101 29491;29492;29493 35232;35233;35234 35232 3 FGYHIIMVEGRK Oxidation (M) 1464.7548 0.7547547 3222 Q9Y237;Q9Y237-2 PIN4 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 yes no 0 0 1 1 By MS/MS 2 0 1 1 43.713 43.42 4 0.014237 12951 20211116_3429_TMUAki_TMT10x_P_F2 56.936 37.097 789770 1199400 1858 1292300 2060900 2148600 1149600 1311400 1488200 1104700 1274100 735370 1119500 85011 1324600 1953300 2117200 1224200 1369400 1491600 1087500 1235700 1 1 1 1 1 1 1 1 1 1 1 789770 1199400 1858 1292300 2060900 2148600 1149600 1311400 1488200 1104700 1274100 735370 1119500 85011 1324600 1953300 2117200 1224200 1369400 1491600 1087500 1235700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 139110000 139110000 0 5471 3222 5102 29494 35235 35235 3212 1 FGYVDFESAEDLEK Unmodified 1647.7304 0.73043325 729 P19338 NCL Nucleolin yes yes 0 0 0 0 By MS/MS By MS/MS 3.19 1.38 4 5 11 5 4 2 17 14 74.779 74.739 2;3 1.6305E-85 25026 20211116_3431_TMUAki_TMT10x_P_F4 352.94 285.86 245080000 400460000 2353600 389920000 266340000 335660000 283630000 218550000 226130000 234630000 286730000 228210000 373640000 21604000 397710000 255880000 342670000 285020000 228600000 234710000 228490000 274720000 35 35 22 35 35 35 35 35 35 35 35 133900000 212080000 1595800 205980000 131960000 227000000 151370000 115980000 121420000 125600000 149380000 124680000 197870000 11956000 210880000 127080000 227470000 151600000 123810000 125820000 122270000 143230000 21 21 14 21 21 21 21 21 21 21 21 111180000 188380000 757770 183930000 134380000 108660000 132260000 102570000 104710000 109030000 137350000 103520000 175760000 9648100 186830000 128800000 115200000 133420000 104790000 108890000 106220000 131490000 14 14 8 14 14 14 14 14 14 14 14 64181000000 34680000000 29501000000 5472 729 5103 29495;29496;29497;29498;29499;29500;29501;29502;29503;29504;29505;29506;29507;29508;29509;29510;29511;29512;29513;29514;29515;29516;29517;29518;29519;29520;29521;29522;29523;29524;29525 35236;35237;35238;35239;35240;35241;35242;35243;35244;35245;35246;35247;35248;35249;35250;35251;35252;35253;35254;35255;35256;35257;35258;35259;35260;35261;35262;35263;35264;35265;35266;35267;35268;35269;35270;35271;35272;35273;35274 35254 39 FHALGPIYYR Unmodified 1235.6451 0.64512789 3165 Q9UL25 RAB21 Ras-related protein Rab-21 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 48.764 48.682 3 0.00013577 15486 20211116_3430_TMUAki_TMT10x_P_F3 111.82 94.58 15158000 24381000 15450 28620000 14615000 12428000 14830000 11652000 11279000 9903400 18427000 14113000 22766000 1165400 28655000 14014000 13642000 14922000 11834000 11884000 9744200 17555000 4 4 1 4 4 4 4 4 4 4 4 4007500 6790300 0 7546900 6100500 6392800 4876800 3483900 3531400 3156700 5231800 3730700 6338900 280770 7628400 5813400 6518400 4969000 3679200 3711800 3096500 4994300 2 2 0 2 2 2 2 2 2 2 2 11151000 17591000 15450 21073000 8514600 6035300 9953400 8168400 7747800 6746700 13195000 10383000 16427000 884600 21027000 8200100 7123800 9952700 8154900 8171900 6647800 12561000 2 2 1 2 2 2 2 2 2 2 2 577540000 194810000 382730000 5473 3165 5104 29526;29527;29528 35275;35276;35277;35278 35276 4 FHCPHCDTVIAR Unmodified 1511.6762 0.6761868 1111 P49711;P49711-2 CTCF Transcriptional repressor CTCF yes no 0 0 0 0 By MS/MS 5 0 2 2 31.179 31.115 3;4 1.2204E-06 7125 20211116_3433_TMUAki_TMT10x_P_F5 119.27 102.04 689590 1168700 2542.4 1053900 1408800 1279300 815560 632860 711570 586610 891390 642070 1090100 67039 1086600 1335900 1274900 855060 674690 734830 574820 854320 2 2 1 2 2 2 2 2 2 2 2 689590 1168700 2542.4 1053900 1408800 1279300 815560 632860 711570 586610 891390 642070 1090100 67039 1086600 1335900 1274900 855060 674690 734830 574820 854320 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50097000 50097000 0 5474 1111 5105 29529;29530 35279;35280 35279 2 FHDIISDAEIEIVK Unmodified 1627.8457 0.84573777 655 P13674;P13674-2;P13674-3 P4HA1 Prolyl 4-hydroxylase subunit alpha-1 yes no 0 0 0 0 By MS/MS 2 0 1 1 73.767 73.582 3 0.010878 25178 20211116_3429_TMUAki_TMT10x_P_F2 58.071 33.646 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5475 655 5106 29531 35281 35281 1 FHDPDSAVVAQHLTNTVFVDR Unmodified 2367.1608 0.16075776 1519 Q05519;Q05519-2 SRSF11 Serine/arginine-rich splicing factor 11 yes no 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 57.311 57.595 4 1.6236E-10 16622 20211116_3444_TMUAki_TMT10x_S_F5 115.74 97.942 20625000 32935000 456480 34494000 31815000 42930000 25449000 25605000 25020000 23367000 25610000 19207000 30738000 2292100 35205000 30373000 42825000 26134000 26840000 25493000 22913000 24687000 5 5 5 5 5 5 5 5 5 5 5 18606000 29307000 414780 31084000 29315000 40961000 23589000 22374000 21787000 20526000 22548000 17327000 27353000 2079100 31733000 27990000 40701000 24171000 23631000 22270000 20123000 21728000 4 4 4 4 4 4 4 4 4 4 4 2018800 3628400 41705 3409600 2499900 1969000 1860600 3231200 3233100 2840200 3061400 1880000 3384900 212980 3472300 2383500 2123100 1963200 3209800 3223000 2790000 2958500 1 1 1 1 1 1 1 1 1 1 1 4405100000 2719700000 1685400000 5476 1519 5107 29532;29533;29534;29535;29536;29537 35282;35283;35284;35285;35286 35286 5 FHEALESILSPQETLK Unmodified 1840.9571 0.95707914 2630 Q9BQP7 MGME1 Mitochondrial genome maintenance exonuclease 1 yes yes 0 0 0 0 By MS/MS 7 0 2 2 71.317 71.56 3 0.00044258 24738 20211116_3446_TMUAki_TMT10x_S_F7 70.197 55.107 5521700 9351900 0 8055000 6320000 5061100 5751200 3493100 3688800 3834900 5728300 5141000 8721500 430740 8264300 6043100 5305400 5799600 3640900 3915300 3731300 5462700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5521700 9351900 0 8055000 6320000 5061100 5751200 3493100 3688800 3834900 5728300 5141000 8721500 430740 8264300 6043100 5305400 5799600 3640900 3915300 3731300 5462700 1 1 0 1 1 1 1 1 1 1 1 450690000 0 450690000 5477 2630 5108 29538;29539 35287;35288 35287 2 FHEICSNLVK Unmodified 1245.6176 0.61759251 1758 Q15041;Q15041-2 ARL6IP1 ADP-ribosylation factor-like protein 6-interacting protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 7 0.756 2 3 2 2 5 45.291 45.534 3 4.3113E-09 13562 20211116_3435_TMUAki_TMT10x_P_F7 130.98 90.393 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5478 1758 5109 29540;29541;29542;29543;29544;29545;29546 35289;35290;35291;35292;35293;35294;35295 35290 7 FHEQFIVR Unmodified 1074.5611 0.56106391 1532 Q06787-8;Q06787-6;Q06787-5;Q06787;Q06787-7;Q06787-2;Q06787-4;Q06787-9;Q06787-3;Q06787-11;Q06787-10 FMR1 Fragile X mental retardation protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 39.071 39.276 3 0.00021452 11143 20211116_3435_TMUAki_TMT10x_P_F7 137.9 114.48 701870 1175500 22940 1224700 1433700 1424100 933150 965540 1011600 842720 1051500 653680 1097100 89818 1248900 1363500 1428200 975140 1001200 1027100 828100 1013100 3 3 3 3 3 3 3 3 3 3 3 547180 907060 14698 957370 1281500 1281400 779670 756940 786390 645980 822680 509590 846570 69348 977960 1217000 1273700 817300 792760 801010 635470 792490 2 2 2 2 2 2 2 2 2 2 2 154690 268460 8241.3 267360 152180 142720 153480 208590 225200 196740 228780 144090 250500 20471 270970 146450 154560 157840 208400 226090 192630 220580 1 1 1 1 1 1 1 1 1 1 1 91612000 70894000 20718000 5479 1532 5110 29547;29548;29549 35296;35297;35298 35297 3 FHFFEDQLR Unmodified 1237.588 0.58800695 1913 Q56VL3 OCIAD2 OCIA domain-containing protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 56.486 56.819 3 2.2595E-06 16664 20211116_3445_TMUAki_TMT10x_S_F6 160.56 140.27 6646900 10496000 100330 11286000 9866700 11085000 7875100 7309900 7077200 6975700 8308800 6189400 9797000 664700 11455000 9415000 11220000 8067500 7612700 7278500 6826600 7977100 3 3 1 3 3 3 3 3 3 3 3 4347300 6816300 100330 7326400 7366100 9180800 5766200 4666600 4457100 4512100 5359100 4048300 6362200 481040 7465800 7027800 9136900 5892000 4967900 4623600 4413100 5141800 2 2 1 2 2 2 2 2 2 2 2 2299600 3679900 0 3959400 2500600 1903800 2108900 2643300 2620200 2463600 2949700 2141100 3434800 183660 3988800 2387200 2082900 2175400 2644800 2654900 2413500 2835300 1 1 0 1 1 1 1 1 1 1 1 1234700000 662080000 572610000 5480 1913 5111 29550;29551;29552;29553;29554;29555 35299;35300;35301;35302;35303;35304 35303 6 FHFVDLAGSER Unmodified 1276.62 0.62003536 2082;1876 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4;Q7Z4S6-6;O75037;O75037-2;O75037-3;O75037-4;Q86VH2;Q86VH2-3;Q86VH2-2;Q2M1P5 KIF21A;KIF21B;KIF27;KIF7 Kinesin-like protein KIF21A;Kinesin-like protein KIF21B;Kinesin-like protein KIF27;Kinesin-like protein KIF7 no no 0 0 0 0 By MS/MS By MS/MS 5.12 0.781 2 3 3 3 5 51.427 51.572 2;3 4.9457E-12 14430 20211116_3445_TMUAki_TMT10x_S_F6 176.95 157.69 13957000 22401000 38645 26157000 18643000 20219000 13627000 17278000 19060000 14632000 20198000 12996000 20916000 715540 26331000 17750000 20898000 14253000 17636000 19193000 14399000 19449000 8 8 2 8 8 8 8 8 8 8 8 6837800 10986000 23357 10634000 12891000 14393000 8207000 7871400 7390200 6211600 9139000 6366800 10249000 174150 10929000 12244000 14284000 8544400 8282500 7616000 6135000 8761900 4 4 1 4 4 4 4 4 4 4 4 7119400 11415000 15289 15524000 5752400 5826000 5419600 9406500 11670000 8419900 11059000 6628700 10667000 541390 15401000 5505400 6613800 5708300 9353700 11577000 8264000 10687000 4 4 1 4 4 4 4 4 4 4 4 4243700000 2115900000 2127800000 5481 2082;1876 5112 29556;29557;29558;29559;29560;29561;29562;29563 35305;35306;35307;35308;35309;35310;35311;35312;35313 35312 9 FHINQPALK Unmodified 1066.5924 0.59236404 2229 Q8NBU5;Q8NBU5-2 ATAD1 ATPase family AAA domain-containing protein 1 yes no 0 0 0 0 By MS/MS 1 0 1 1 43.67 43.472 3 0.023377 13420 20211116_3439_TMUAki_TMT10x_S_F1 60.436 41.194 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5482 2229 5113 29564 35314 35314 1 FHLGLFTDR Unmodified 1104.5716 0.5716286 2287 Q8TEQ6 GEMIN5 Gem-associated protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 57.372 57.325 3 1.9617E-05 17050 20211116_3436_TMUAki_TMT10x_P_F8 148.52 110.97 3394500 5479200 54254 5380900 4043400 5124900 3911100 3958400 3860500 3933300 4180000 3160700 5112300 303170 5492500 3874500 5210500 3972500 4082800 3941000 3842500 4022400 4 4 3 4 4 4 4 4 4 4 4 1660200 2525000 35510 2669700 2312000 3609400 2134800 2006900 1963600 1820000 2069500 1546100 2356600 179870 2727400 2214500 3583100 2169400 2115800 2008900 1785200 1993100 2 2 2 2 2 2 2 2 2 2 2 1734300 2954200 18743 2711200 1731500 1515500 1776200 1951500 1896900 2113300 2110500 1614600 2755600 123310 2765200 1660000 1627400 1803100 1967000 1932100 2057300 2029300 2 2 1 2 2 2 2 2 2 2 2 1299900000 606360000 693560000 5483 2287 5114 29565;29566;29567;29568 35315;35316;35317;35318 35316 4 FHLISPLIQK Unmodified 1194.7125 0.71247918 251 O43847;O43847-2 NRD1 Nardilysin yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 61.189 61.356 3 2.7937E-09 18182 20211116_3444_TMUAki_TMT10x_S_F5 142.92 50.986 2375300 3430000 29790 3416200 3075900 4101200 2388800 2200100 2144300 2180900 2656000 2211900 3200500 234510 3496300 2933900 4093100 2451400 2332300 2210300 2130800 2546300 1 1 1 1 1 1 1 1 1 1 1 2375300 3430000 29790 3416200 3075900 4101200 2388800 2200100 2144300 2180900 2656000 2211900 3200500 234510 3496300 2933900 4093100 2451400 2332300 2210300 2130800 2546300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 372740000 372740000 0 5484 251 5115 29569;29570 35319;35320 35320 2 FHLLELEK Unmodified 1027.5702 0.57023162 15 Q99687;A8K0S8;O00470;O14770;A6NDR6;O14770-5;O14770-6;Q99687-3;O14770-7;O14770-8;O14770-3;O14770-2;Q99687-2;O00470-2;O14770-4 MEIS3;MEIS3P2;MEIS1;MEIS2;MEIS3P1 Homeobox protein Meis3;Putative homeobox protein Meis3-like 2;Homeobox protein Meis1;Homeobox protein Meis2;Putative homeobox protein Meis3-like 1 yes no 0 0 0 0 By MS/MS 7 0 1 1 57.638 58.16 3 0.0017192 19147 20211116_3446_TMUAki_TMT10x_S_F7 90.657 65.802 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5485 15 5116 29571 35321 35321 1 FHMVDGNVSGEFTDLVPEK Oxidation (M) 2135.9834 0.98337024 431 O95433;O95433-2 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 yes no 0 0 1 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 2 3 63.553 63.564 3 1.3782E-06 18971 20211116_3434_TMUAki_TMT10x_P_F6 96.544 78.18 28469000 50844000 756640 49750000 34337000 47068000 31521000 40415000 39356000 39368000 39869000 26513000 47439000 3147600 50791000 32899000 47965000 32363000 41395000 39713000 38492000 38444000 11 11 11 11 11 11 11 11 11 11 11 11759000 20505000 244950 18870000 15079000 27890000 14275000 16702000 15483000 15716000 15294000 10950000 19127000 1249700 19501000 14453000 27605000 14559000 17516000 15691000 15389000 14760000 5 5 5 5 5 5 5 5 5 5 5 16710000 30339000 511690 30880000 19259000 19177000 17246000 23713000 23873000 23652000 24575000 15563000 28312000 1897900 31290000 18446000 20360000 17803000 23879000 24022000 23102000 23684000 6 6 6 6 6 6 6 6 6 6 6 4044800000 1791900000 2252900000 5486 431 5117 29572;29573;29574;29575;29576 35322;35323;35324;35325;35326;35327;35328;35329;35330;35331;35332 35325 323 11 FHMVDGNVSGEFTDLVPEK Unmodified 2119.9885 0.98845562 431 O95433;O95433-2 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 70.475 70.587 3 3.0033E-12 21911 20211116_3434_TMUAki_TMT10x_P_F6 124.29 114.5 15229000 25284000 207770 25328000 16626000 20939000 17343000 11010000 9440400 11175000 16897000 14181000 23593000 1429800 25770000 15970000 21379000 17309000 11700000 10214000 10907000 16069000 5 5 4 5 5 5 5 5 5 5 5 9924300 16244000 144550 16767000 10486000 15918000 11686000 6967700 5927100 7322100 10955000 9241200 15160000 919340 17056000 10091000 16068000 11612000 7546600 6460200 7136600 10412000 3 3 2 3 3 3 3 3 3 3 3 5304900 9039600 63225 8560500 6140000 5020800 5656900 4042500 3513300 3852600 5942400 4939900 8433100 510430 8714100 5879000 5311300 5696900 4153800 3754100 3770500 5657200 2 2 2 2 2 2 2 2 2 2 2 1158500000 615730000 542730000 5487 431 5117 29577;29578 35333;35334;35335;35336;35337 35333 5 FHMYEGYPLWK Oxidation (M) 1485.6751 0.67510739 469 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 1 0 By MS/MS 8 0 1 1 57.969 58.133 3 0.013259 17432 20211116_3436_TMUAki_TMT10x_P_F8 57.785 49.48 10303000 18511000 92064 16932000 14137000 23410000 13901000 14178000 15988000 13132000 12996000 9592300 17267000 861190 17481000 13546000 23241000 14178000 14849000 16068000 12868000 12629000 2 2 1 2 2 2 2 2 2 2 2 10303000 18511000 92064 16932000 14137000 23410000 13901000 14178000 15988000 13132000 12996000 9592300 17267000 861190 17481000 13546000 23241000 14178000 14849000 16068000 12868000 12629000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 362860000 362860000 0 5488 469 5118 29579 35338;35339 35339 358 2 FHNELNAHIK Unmodified 1221.6255 0.62545508 641 P12270;P12270-2 TPR Nucleoprotein TPR yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 34.376 34.441 4 0.00038451 7214 20211116_3444_TMUAki_TMT10x_S_F5 98.943 75.338 829780 1193300 9329.2 1310100 1365600 1270700 855040 843990 854450 780210 1003000 772680 1114000 84993 1327700 1297100 1287400 893980 877740 874560 764620 962960 2 2 2 2 2 2 2 2 2 2 2 627880 886420 4696.1 992800 1144900 1081200 660960 613070 634780 560500 759630 584660 827520 63673 1006600 1085900 1085500 694940 645380 651360 549580 728930 1 1 1 1 1 1 1 1 1 1 1 201900 306920 4633.1 317340 220730 189510 194080 230920 219670 219700 243370 188020 286430 21320 321100 211260 201880 199050 232360 223200 215040 234030 1 1 1 1 1 1 1 1 1 1 1 55415000 42149000 13267000 5489 641 5119 29580;29581 35340;35341 35341 2 FHNELNLR Unmodified 1041.5356 0.53557744 189 O15397;O15397-2 IPO8 Importin-8 yes no 0 0 0 0 By MS/MS By MS/MS 5 0 3 2 1 35.552 35.62 3 0.0025593 7743 20211116_3444_TMUAki_TMT10x_S_F5 91.069 58.228 321140 505630 0 524740 342160 259080 324240 376440 405790 334930 471780 298970 471880 21610 530000 327280 282960 332350 375580 411590 328820 453070 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 321140 505630 0 524740 342160 259080 324240 376440 405790 334930 471780 298970 471880 21610 530000 327280 282960 332350 375580 411590 328820 453070 1 1 0 1 1 1 1 1 1 1 1 48730000 33519000 15211000 5490 189 5120 29582;29583;29584 35342;35343 35343 2 FHNWFDDR Unmodified 1135.4835 0.48354187 1061 P46977 STT3A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A yes yes 0 0 0 0 By MS/MS 5 0 1 1 49.207 49.389 3 0.037012 14396 20211116_3433_TMUAki_TMT10x_P_F5 56.729 44.504 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5491 1061 5121 29585 35344 35344 1 FHPEPYGLEDDQR Unmodified 1601.711 0.71103521 284 O60716;O60716-3;O60716-2;O60716-6;O60716-5;O60716-7;O60716-9;O60716-8;O60716-10;O60716-12;O60716-14;O60716-11;O60716-13;O60716-16;O60716-15;O60716-4;O60716-23;O60716-22;O60716-24;O60716-17;O60716-20;O60716-18;O60716-19;O60716-21 CTNND1 Catenin delta-1 yes no 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 39.968 40.021 3 0.0098306 11840 20211116_3430_TMUAki_TMT10x_P_F3 57.042 40.789 487930 730630 2223.7 938100 1315500 938630 558370 450490 551340 427220 619040 454290 682530 49284 942370 1242100 945210 605750 481970 563600 418200 595070 2 2 1 2 2 2 2 2 2 2 2 487930 730630 2223.7 938100 1315500 938630 558370 450490 551340 427220 619040 454290 682530 49284 942370 1242100 945210 605750 481970 563600 418200 595070 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17886000 17886000 0 5492 284 5122 29586;29587 35345;35346;35347 35347 3 FHPIQGHR Unmodified 990.51478 0.51478242 1601 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 4 2 2 25.188 25.252 3 0.022637 3925 20211116_3428_TMUAki_TMT10x_P_F1 56.547 42.777 976100 1690700 24582 1387000 1312400 1664800 1245000 1130400 1082000 1026200 1337000 909020 1576500 107470 1440500 1258200 1666900 1261400 1173200 1117000 1006500 1281900 3 3 2 3 3 3 3 3 3 3 3 481210 759750 14994 624650 615170 911790 593080 532480 524070 472970 636100 448160 708420 55746 651080 590210 902630 600610 558750 540150 464380 610150 1 1 1 1 1 1 1 1 1 1 1 494890 930990 9588.1 762320 697270 753050 651930 597930 557960 553220 700940 460850 868080 51719 789470 667950 764240 660750 614430 576810 542140 671740 2 2 1 2 2 2 2 2 2 2 2 35959000 17659000 18299000 5493 1601 5123 29588;29589;29590;29591 35348;35349;35350;35351 35348 4 FHPKPSDLHLQTGYKVER Unmodified 2151.1225 0.12252176 796 P24928;P24928-2 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 0 0 0 2 By MS/MS By matching 1.5 0.5 1 1 1 1 39.202 39.244 6 1.743E-05 9568 20211116_3428_TMUAki_TMT10x_P_F1 82.482 73.625 430480 723670 1547.4 835700 1038800 1172000 582130 631720 630230 527000 604730 400830 675680 45651 849670 984650 1161000 615850 666420 638150 519010 584150 1 1 1 1 1 1 1 1 1 1 1 430480 723670 1547.4 835700 1038800 1172000 582130 631720 630230 527000 604730 400830 675680 45651 849670 984650 1161000 615850 666420 638150 519010 584150 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 109290000 90391000 18896000 5494 796 5124 29592;29593 35352 35352 1 FHPNGSTLASAGFDR Unmodified 1575.743 0.74300404 2436 Q96DI7;Q96DI7-2 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 41.121 41.458 3 0.0060099 12196 20211116_3435_TMUAki_TMT10x_P_F7 61.165 49.373 4754900 7626300 41639 7669000 7130000 9025100 6263700 5134000 5319000 5227000 6408700 4427600 7116300 462600 7840900 6817100 9023100 6369600 5419000 5491200 5101200 6148500 2 2 1 2 2 2 2 2 2 2 2 3803900 6020000 41639 6101800 5757900 7977300 5034200 4033800 4343400 4136600 5128600 3542200 5617600 381540 6247100 5505200 7922400 5122900 4303400 4476700 4035800 4923000 1 1 1 1 1 1 1 1 1 1 1 950970 1606300 0 1567200 1372100 1047900 1229500 1100200 975680 1090400 1280100 885420 1498700 81053 1593800 1311800 1100700 1246700 1115600 1014500 1065300 1225500 1 1 0 1 1 1 1 1 1 1 1 178780000 133880000 44897000 5495 2436 5125 29594;29595;29596 35353;35354;35355 35354 3 FHQFLVSETESGNISR Unmodified 1849.8959 0.89587586 1552 Q08J23;Q08J23-2 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 49.923 50.239 3 2.2154E-21 13917 20211116_3445_TMUAki_TMT10x_S_F6 168.45 147.8 16793000 28271000 221150 30088000 28735000 35351000 21400000 23789000 22601000 21450000 23472000 15637000 26386000 1758000 30645000 27381000 35429000 22128000 24701000 22971000 21045000 22615000 8 8 6 8 8 8 8 8 8 8 8 13920000 23065000 219020 24924000 25700000 32670000 19106000 19672000 18469000 17577000 19269000 12963000 21529000 1520200 25411000 24490000 32512000 19705000 20595000 18845000 17253000 18563000 6 6 5 6 6 6 6 6 6 6 6 2872300 5206000 2121.3 5164300 3034900 2681200 2294000 4116800 4132500 3872700 4203100 2674400 4857600 237800 5234200 2891200 2916900 2422600 4105900 4126200 3792400 4052400 2 2 1 2 2 2 2 2 2 2 2 2132300000 1257000000 875330000 5496 1552 5126 29597;29598;29599;29600;29601;29602 35356;35357;35358;35359;35360;35361;35362;35363;35364 35363 9 FHQLDIDDLQSIR Unmodified 1598.8053 0.80526994 691;361 O75828;P16152;P16152-2 CBR3;CBR1 Carbonyl reductase [NADPH] 3;Carbonyl reductase [NADPH] 1 no no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 59.994 60.135 3 4.4969E-15 17663 20211116_3444_TMUAki_TMT10x_S_F5 173.06 147.09 8825700 16108000 39240 15433000 10920000 11530000 9833700 11002000 11131000 10692000 12419000 8217200 15028000 717130 15734000 10440000 11975000 10072000 11203000 11312000 10455000 11940000 3 3 1 3 3 3 3 3 3 3 3 2660900 4578800 0 4021500 3517600 5389500 3380000 3626200 3198800 3188200 3572600 2477100 4270400 174400 4162400 3365600 5366500 3430100 3762800 3275400 3131800 3434800 1 1 0 1 1 1 1 1 1 1 1 6164700 11529000 39240 11412000 7402300 6140900 6453600 7375700 7931800 7504200 8846200 5740100 10757000 542730 11571000 7074700 6608800 6641600 7440600 8037000 7323700 8505300 2 2 1 2 2 2 2 2 2 2 2 1067400000 511050000 556310000 5497 361;691 5127 29603;29604;29605 35365;35366;35367;35368 35368 4 FHSPFIVENYR Unmodified 1407.6935 0.69353465 744 P20585 MSH3 DNA mismatch repair protein Msh3 yes yes 0 0 0 0 By MS/MS 8 0 1 1 51.099 51.001 3 0.0016488 14056 20211116_3447_TMUAki_TMT10x_S_F8 74.53 56.394 1144800 2243500 77272 2225100 1338200 1358300 1358700 1742200 1633900 1770100 1820000 1066500 2093400 169640 2258300 1288400 1445900 1385600 1752800 1656800 1727600 1749900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1144800 2243500 77272 2225100 1338200 1358300 1358700 1742200 1633900 1770100 1820000 1066500 2093400 169640 2258300 1288400 1445900 1385600 1752800 1656800 1727600 1749900 1 1 1 1 1 1 1 1 1 1 1 88259000 0 88259000 5498 744 5128 29606 35369 35369 1 FHSQLMR Unmodified 917.45416 0.454156 1101 P49458 SRP9 Signal recognition particle 9 kDa protein yes yes 0 0 0 0 By matching By MS/MS 1 0 2 1 1 32.054 32.069 3 0.035521 8777 20211116_3439_TMUAki_TMT10x_S_F1 55.441 25.868 143090 232610 1891.8 224320 153840 112350 149750 133880 128720 143260 184600 133250 217020 13777 227760 147520 121840 151460 135310 133850 139530 176350 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 143090 232610 1891.8 224320 153840 112350 149750 133880 128720 143260 184600 133250 217020 13777 227760 147520 121840 151460 135310 133850 139530 176350 1 1 1 1 1 1 1 1 1 1 1 14967000 7085400 7881700 5499 1101 5129 29607;29608 35370 35370 1 FHTEALTALLSDDSK Unmodified 1646.8152 0.81516593 1360 P62495;P62495-2 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 0 0 0 0 By MS/MS 6 0 1 1 68.173 68.136 3 2.4642E-14 20923 20211116_3434_TMUAki_TMT10x_P_F6 146.96 123.97 2952900 4509500 26154 5333000 3088900 5376500 3312700 2893700 2957400 2989200 3332400 2749600 4210900 271100 5383000 2969000 5418700 3337500 3070300 3037500 2915500 3203100 1 1 1 1 1 1 1 1 1 1 1 2952900 4509500 26154 5333000 3088900 5376500 3312700 2893700 2957400 2989200 3332400 2749600 4210900 271100 5383000 2969000 5418700 3337500 3070300 3037500 2915500 3203100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 626830000 626830000 0 5500 1360 5130 29609 35371 35371 1 FHVEEEGK Unmodified 973.45051 0.45051041 473 P00558;P00558-2;P07205 PGK1;PGK2 Phosphoglycerate kinase 1;Phosphoglycerate kinase 2 yes no 0 0 0 0 By MS/MS By MS/MS 3 1.41 1 1 1 1 1 3 2 33.79 33.738 3 0.00015484 9018 20211116_3429_TMUAki_TMT10x_P_F2 143.01 82.492 4596300 7025900 52884 7169300 5922300 5443400 5189000 2875000 3671700 3132900 5271600 4280000 6556400 448920 7277900 5663400 5594100 5254800 3060500 3858500 3049100 5035800 4 4 4 4 4 4 4 4 4 4 4 2930900 4346200 40893 4456800 4253400 4205100 3171300 1910300 2438300 2048900 3389700 2729200 4055900 299620 4535100 4053600 4247800 3250600 2062200 2546300 1995400 3240500 2 2 2 2 2 2 2 2 2 2 2 1665400 2679700 11991 2712500 1668900 1238300 2017700 964690 1233400 1084000 1881900 1550800 2500500 149300 2742900 1609800 1346300 2004100 998210 1312100 1053800 1795300 2 2 2 2 2 2 2 2 2 2 2 373590000 224630000 148960000 5501 473 5131 29610;29611;29612;29613;29614 35372;35373;35374;35375 35372 4 FHVEEEGKGK Unmodified 1158.5669 0.56693715 473 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 33.002 32.988 4 0.00024346 7865 20211116_3433_TMUAki_TMT10x_P_F5 111.06 96.026 2040600 3695100 8853.1 2360900 4527000 6968800 3806200 4275100 4362800 4328300 3831800 1900000 3442900 211760 2571700 4323100 6754600 3915700 4484200 4395200 4225100 3712900 2 2 1 2 2 2 2 2 2 2 2 2040600 3695100 8853.1 2360900 4527000 6968800 3806200 4275100 4362800 4328300 3831800 1900000 3442900 211760 2571700 4323100 6754600 3915700 4484200 4395200 4225100 3712900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 137160000 137160000 0 5502 473 5132 29615;29616 35376;35377 35377 2 FIAGTGCLVR Unmodified 1092.575 0.57499942 14 A6NDG6 PGP Phosphoglycolate phosphatase yes yes 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 51.633 51.375 2 0.00039791 16148 20211116_3429_TMUAki_TMT10x_P_F2 110.55 82.719 13991000 21156000 0 22167000 17137000 18919000 14764000 16202000 16305000 15752000 17339000 13025000 19744000 979230 22494000 16357000 19413000 15148000 16596000 16557000 15402000 16694000 3 3 0 3 3 3 3 3 3 3 3 4857600 7349900 0 7727200 8156500 10311000 5511100 5854400 5926500 5776100 6201300 4522000 6859600 336870 7895000 7747100 10245000 5741300 6174900 6020800 5644500 5973700 1 1 0 1 1 1 1 1 1 1 1 9133500 13806000 0 14440000 8980400 8608400 9253200 10347000 10378000 9975600 11137000 8503200 12885000 642360 14599000 8610400 9168400 9406500 10421000 10536000 9758000 10720000 2 2 0 2 2 2 2 2 2 2 2 582830000 356670000 226160000 5503 14 5133 29617;29618;29619 35378;35379;35380 35378 3 FIASTGMDR Oxidation (M) 1012.4648 0.46478027 3182 Q9UMS4 PRPF19 Pre-mRNA-processing factor 19 yes yes 0 0 1 0 By MS/MS By MS/MS 5.14 0.833 2 2 3 4 3 34.78 34.83 2 0.0011483 7042 20211116_3442_TMUAki_TMT10x_S_F4 111.82 73.024 4046500 6289700 4225.1 7116600 9010900 7228000 4911300 3897200 4536400 3666600 5377600 3767400 5872000 365960 7203300 8534800 7281700 5184500 4123600 4661300 3590500 5161500 11 11 3 11 11 11 11 11 11 11 11 3141600 4801000 0 5477900 7998100 6470200 3970500 2897000 3502500 2830400 4151900 2924900 4482300 294830 5555400 7565500 6449900 4223600 3123800 3606700 2767100 3985100 4 4 0 4 4 4 4 4 4 4 4 904860 1488700 4225.1 1638700 1012800 757800 940750 1000200 1033900 836170 1225600 842510 1389700 71132 1648000 969300 831780 960900 999760 1054600 823400 1176400 7 7 3 7 7 7 7 7 7 7 7 369830000 307640000 62189000 5504 3182 5134 29620;29621;29622;29623;29624;29625;29626 35381;35382;35383;35384;35385;35386;35387;35388;35389 35386 3177 9 FICEQDHQNFLR Unmodified 1605.7358 0.73581017 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 0 By MS/MS By MS/MS 4.27 1.21 1 2 3 3 2 7 4 46.405 46.433 2;3 9.8965E-39 12909 20211116_3431_TMUAki_TMT10x_P_F4 277.15 248.97 43030000 67528000 536810 82066000 80191000 80576000 48506000 67635000 64788000 56617000 66616000 40066000 63065000 4236600 82671000 76104000 81886000 51362000 69090000 65263000 55749000 64206000 11 11 6 11 11 11 11 11 11 11 11 25612000 40173000 286520 50157000 64883000 66925000 36131000 41925000 40320000 34381000 41289000 23847000 37523000 2676200 50714000 61490000 66583000 38282000 43662000 40870000 33889000 39800000 6 6 3 6 6 6 6 6 6 6 6 17418000 27354000 250290 31909000 15308000 13651000 12375000 25711000 24468000 22236000 25328000 16219000 25542000 1560400 31958000 14614000 15304000 13080000 25428000 24393000 21860000 24406000 5 5 3 5 5 5 5 5 5 5 5 14054000000 7166500000 6887300000 5505 2345 5135 29627;29628;29629;29630;29631;29632;29633;29634;29635;29636;29637 35390;35391;35392;35393;35394;35395;35396;35397;35398;35399;35400;35401;35402 35391 13 FICISDLR Unmodified 1022.5219 0.52190122 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 62.591 63.167 2 0.0095063 20633 20211116_3435_TMUAki_TMT10x_P_F7 81.784 55.89 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5506 1997 5136 29638;29639 35403;35404 35403 2 FICTTSAIQNR Unmodified 1309.6449 0.6448699 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 By MS/MS By MS/MS 3 2.92 4 2 2 4 4 44.851 44.771 2;3 1.2834E-23 11994 20211116_3436_TMUAki_TMT10x_P_F8 251.75 210.56 7675800 11972000 46246 14722000 19549000 16336000 9214600 11315000 11821000 9503000 12005000 7147000 11182000 808350 14848000 18485000 16429000 9967900 11704000 11919000 9355800 11575000 7 7 4 7 7 7 7 7 7 7 7 5939400 9114300 44329 11230000 18223000 15138000 8013400 8741200 9188100 7380900 9195900 5530200 8512500 668370 11366000 17216000 15037000 8698500 9169600 9296200 7264600 8870700 5 5 3 5 5 5 5 5 5 5 5 1736500 2857900 1917.1 3491200 1326400 1197700 1201300 2574100 2633100 2122100 2808600 1616800 2669100 139980 3482600 1268800 1392600 1269400 2534200 2622300 2091200 2704000 2 2 1 2 2 2 2 2 2 2 2 1287600000 920340000 367210000 5507 1200 5137 29640;29641;29642;29643;29644;29645;29646;29647 35405;35406;35407;35408;35409;35410;35411;35412 35409 8 FIDFFKR Unmodified 971.52289 0.52288749 1104 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 1 By MS/MS By MS/MS 4 0.707 1 2 1 3 1 65.057 64.98 3 0.002642 21009 20211116_3442_TMUAki_TMT10x_S_F4 139.31 112.35 6088100 9510900 43153 10347000 13515000 19618000 9240400 11910000 11266000 10625000 9895700 5668500 8877800 582980 10635000 12850000 19240000 9659100 12460000 11324000 10430000 9588400 3 3 2 3 3 3 3 3 3 3 3 6088100 9510900 43153 10347000 13515000 19618000 9240400 11910000 11266000 10625000 9895700 5668500 8877800 582980 10635000 12850000 19240000 9659100 12460000 11324000 10430000 9588400 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 680910000 680910000 0 5508 1104 5138 29648;29649;29650;29651 35413;35414;35415;35416;35417 35417 5 FIDPFCK Unmodified 925.43677 0.4367746 1724 Q14684;Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 2 3 68.395 68.452 2 0.0025245 23368 20211116_3446_TMUAki_TMT10x_S_F7 124.89 81.073 32283000 53273000 213090 57478000 40470000 49265000 35548000 38555000 35508000 38481000 42032000 30060000 49725000 2934400 58217000 38690000 50454000 36314000 39738000 36356000 37585000 40344000 4 4 2 4 4 4 4 4 4 4 4 16312000 26063000 202460 28920000 22169000 32848000 20192000 17861000 16558000 17939000 20341000 15190000 24330000 1584400 29360000 21216000 32885000 20473000 18918000 17138000 17517000 19505000 2 2 1 2 2 2 2 2 2 2 2 15971000 27210000 10624 28558000 18301000 16417000 15356000 20694000 18950000 20542000 21690000 14870000 25395000 1350000 28857000 17474000 17569000 15841000 20820000 19218000 20068000 20839000 2 2 1 2 2 2 2 2 2 2 2 2030800000 595990000 1434800000 5509 1724 5139 29652;29653;29654;29655;29656 35418;35419;35420;35421;35422 35422 5 FIDPFCR Unmodified 953.44292 0.44292261 1253 P56182 RRP1 Ribosomal RNA processing protein 1 homolog A yes yes 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 63.012 63.337 2 0.0022242 20736 20211116_3435_TMUAki_TMT10x_P_F7 128.38 60.349 7537700 12201000 89510 12468000 9254700 12303000 8945300 8632800 7922400 8412100 9577700 7019000 11386000 732400 12698000 8871500 12461000 9058100 8955900 8163200 8224800 9188000 2 2 2 2 2 2 2 2 2 2 2 4937400 7721000 2626.6 7938200 6031700 9378200 6104500 5404300 4961100 5303200 6018800 4597200 7205300 427120 8104400 5785500 9375800 6152800 5692300 5134600 5183600 5773400 1 1 1 1 1 1 1 1 1 1 1 2600300 4480200 86884 4529600 3223000 2924800 2840800 3228500 2961400 3108900 3558900 2421800 4180700 305280 4593500 3086000 3085400 2905300 3263600 3028600 3041200 3414600 1 1 1 1 1 1 1 1 1 1 1 537790000 436980000 100810000 5510 1253 5140 29657;29658;29659 35423;35424;35425 35424 3 FIDPLAKEEENVGIDITEPLYMQR Oxidation (M) 2835.4001 0.40006133 911 P33991 MCM4 DNA replication licensing factor MCM4 yes yes 0 0 1 1 By MS/MS By MS/MS 2.18 0.936 3 4 3 1 4 7 78.502 78.459 3;4 4.5361E-17 28587 20211116_3441_TMUAki_TMT10x_S_F3 136.64 124.32 26523000 45741000 77530 39203000 29232000 45525000 32106000 31223000 30267000 33541000 35300000 24694000 42657000 1671700 40550000 28091000 45666000 32360000 32537000 31050000 32662000 33897000 8 8 3 8 8 8 8 8 8 8 8 13482000 23368000 25968 19538000 12228000 27313000 14619000 15072000 14602000 16944000 17637000 12553000 21791000 677320 20319000 11783000 27070000 14703000 15998000 14963000 16471000 16920000 3 3 1 3 3 3 3 3 3 3 3 13040000 22373000 51562 19665000 17004000 18212000 17487000 16151000 15665000 16597000 17663000 12141000 20866000 994340 20231000 16307000 18596000 17657000 16539000 16087000 16191000 16977000 5 5 2 5 5 5 5 5 5 5 5 11628000000 5478100000 6149400000 5511 911 5141 29660;29661;29662;29663;29664;29665;29666;29667;29668;29669;29670 35426;35427;35428;35429;35430;35431;35432;35433 35431 1121 8 FIDTSQFILNR Unmodified 1352.7089 0.70885036 256 O60220 TIMM8A Mitochondrial import inner membrane translocase subunit Tim8 A yes yes 0 0 0 0 By MS/MS By MS/MS 4 3.29 2 1 2 2 3 73.377 73.305 2 1.8883E-17 23499 20211116_3428_TMUAki_TMT10x_P_F1 193.01 159.21 6329200 10689000 23473 9774400 6655400 10031000 7560300 7634400 6925100 7933800 8139100 5893000 9970900 519140 10040000 6403600 10149000 7601800 7892000 7116000 7736300 7813900 2 2 1 2 2 2 2 2 2 2 2 3521800 6051200 23473 5177500 3339700 6679000 3929000 4268200 3977200 4379000 4529900 3279300 5643100 311300 5366100 3218500 6657300 3956000 4464600 4063600 4272200 4352800 1 1 1 1 1 1 1 1 1 1 1 2807400 4638200 0 4596900 3315700 3351900 3631300 3366100 2948000 3554800 3609200 2613700 4327800 207830 4673900 3185100 3491800 3645800 3427400 3052400 3464100 3461200 1 1 0 1 1 1 1 1 1 1 1 1151900000 431800000 720100000 5512 256 5142 29671;29672;29673;29674;29675 35434;35435;35436;35437 35434 4 FIDTTSK Unmodified 810.41233 0.41233399 975 P39023;Q92901 RPL3;RPL3L 60S ribosomal protein L3;60S ribosomal protein L3-like yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 43.607 43.719 2 0.0067709 10964 20211116_3444_TMUAki_TMT10x_S_F5 112.37 69.304 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5513 975 5143 29676;29677;29678 35438;35439;35440 35440 3 FIDVPTLCEMLSYTPSSSK Unmodified 2174.0275 0.027543244 918 P34949;P34949-2 MPI Mannose-6-phosphate isomerase yes no 0 0 0 0 By matching By MS/MS 1.33 0.471 2 1 1 2 80.95 80.935 3 0.0013488 26864 20211116_3440_TMUAki_TMT10x_S_F2 61.096 45.504 1507000 2503000 11555 2548900 2044900 1534400 1851600 986890 1015000 1138300 1453100 1403200 2335800 143240 2581800 1956600 1613400 1862400 1035600 1084700 1105500 1388200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1507000 2503000 11555 2548900 2044900 1534400 1851600 986890 1015000 1138300 1453100 1403200 2335800 143240 2581800 1956600 1613400 1862400 1035600 1084700 1105500 1388200 1 1 1 1 1 1 1 1 1 1 1 970270000 399200000 571080000 5514 918 5144 29679;29680;29681 35441 35441 1 FIEDELQIPVK Unmodified 1329.718 0.71801807 874 P30520 ADSS Adenylosuccinate synthetase isozyme 2 yes yes 0 0 0 0 By MS/MS By MS/MS 3.44 1.07 2 3 2 2 3 6 75.823 75.709 2;3 0.00010525 25333 20211116_3442_TMUAki_TMT10x_S_F4 96.331 56.33 10750000 18054000 111990 16039000 11336000 16652000 11804000 10980000 12120000 12568000 12630000 10010000 16838000 945220 16514000 10884000 16798000 11958000 11497000 12334000 12209000 12168000 4 4 3 4 4 4 4 4 4 4 4 5490500 9083400 18747 8288300 5268500 10897000 6016600 5563700 6453900 6431800 6196100 5111900 8472800 410960 8550600 5067800 10820000 6077300 5951900 6537400 6245900 5985100 2 2 1 2 2 2 2 2 2 2 2 5259500 8970100 93243 7750400 6067600 5754800 5787100 5416000 5666200 6135700 6433900 4897800 8365500 534270 7963000 5816500 5978100 5881000 5545300 5796900 5962800 6182800 2 2 2 2 2 2 2 2 2 2 2 778850000 216480000 562370000 5515 874 5145 29682;29683;29684;29685;29686;29687;29688;29689;29690 35442;35443;35444;35445;35446;35447;35448;35449;35450;35451 35449 10 FIEEHATK Unmodified 973.4869 0.48689592 654 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 By MS/MS By MS/MS 4.25 0.829 1 1 2 2 2 34.315 34.293 3 0.0031849 8195 20211116_3431_TMUAki_TMT10x_P_F4 86.205 67.894 3218400 5118700 2064.8 5295900 4209900 4902200 3411100 2897100 3108300 2859900 3907900 2996400 4776900 254330 5384300 4014800 4973300 3492400 3045600 3203800 2794600 3745100 4 4 1 4 4 4 4 4 4 4 4 2131600 3333500 0 3461400 3128900 3951700 2337000 1835800 2044100 1868700 2604500 1984600 3111000 165480 3529500 2978600 3947900 2402900 1974300 2112200 1823700 2495100 2 2 0 2 2 2 2 2 2 2 2 1086700 1785200 2064.8 1834500 1081000 950490 1074100 1061300 1064200 991220 1303400 1011800 1665900 88849 1854800 1036300 1025300 1089500 1071400 1091600 970970 1250000 2 2 1 2 2 2 2 2 2 2 2 126810000 102050000 24759000 5516 654 5146 29691;29692;29693;29694 35452;35453;35454;35455 35452 4 FIEEQVRR Unmodified 1075.5774 0.57744226 297 O60870;O60870-2 KIN DNA/RNA-binding protein KIN17 yes no 0 0 0 1 By MS/MS 5 0 1 1 32.236 32.399 3 0.034886 6476 20211116_3444_TMUAki_TMT10x_S_F5 56.378 6.1035 170880 287850 15250 261070 201380 161040 178500 139490 166340 208350 203140 159220 268490 28807 266730 193440 169740 181880 144970 171060 200650 194830 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 170880 287850 15250 261070 201380 161040 178500 139490 166340 208350 203140 159220 268490 28807 266730 193440 169740 181880 144970 171060 200650 194830 1 1 1 1 1 1 1 1 1 1 1 2210100 0 2210100 5517 297 5147 29695 35456 35456 1 FIEIAAR Unmodified 818.46504 0.46503826 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 By MS/MS By MS/MS 4.73 1.6 1 2 2 2 2 2 6 5 50.435 50.555 2 0.0013685 14798 20211116_3433_TMUAki_TMT10x_P_F5 144.66 98.907 112060000 167390000 178330 177290000 143700000 150570000 114470000 123490000 94932000 124020000 134950000 104320000 156230000 8309700 179770000 136950000 154430000 117040000 126940000 98853000 121110000 128940000 14 14 5 14 14 14 14 14 14 14 14 53287000 75880000 13434 79044000 82511000 95123000 50138000 55994000 44984000 56524000 61430000 49608000 70816000 3963100 80655000 78246000 95034000 52391000 58922000 46573000 55183000 58750000 7 7 1 7 7 7 7 7 7 7 7 58770000 91509000 164890 98245000 61184000 55447000 64337000 67497000 49948000 67500000 73523000 54716000 85413000 4346600 99110000 58709000 59396000 64649000 68018000 52280000 65924000 70195000 7 7 4 7 7 7 7 7 7 7 7 17010000000 8898500000 8111200000 5518 1474 5148 29696;29697;29698;29699;29700;29701;29702;29703;29704;29705;29706 35457;35458;35459;35460;35461;35462;35463;35464;35465;35466;35467;35468;35469;35470 35460 14 FIFVGTLK Unmodified 923.54804 0.54803961 1975 Q6GQQ9;Q6GQQ9-2 OTUD7B OTU domain-containing protein 7B yes no 0 0 0 0 By MS/MS 5 0 1 1 74.458 74.495 2 0.0099316 24683 20211116_3433_TMUAki_TMT10x_P_F5 81.191 36.218 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5519 1975 5149 29707 35471 35471 1 FIGATANFSR Unmodified 1082.5509 0.55089316 2281 Q8TDP1 RNASEH2C Ribonuclease H2 subunit C yes yes 0 0 0 0 By MS/MS By matching 2.5 0.5 1 1 1 1 50.444 50.131 2 1.5733E-09 15665 20211116_3429_TMUAki_TMT10x_P_F2 185.81 134.24 2203900 3684600 0 3509600 4066200 4903500 2873800 3415900 3431200 2992200 3163200 2051800 3437500 176310 3613500 3866700 4875900 2994700 3535400 3456700 2939800 3059700 1 1 0 1 1 1 1 1 1 1 1 2203900 3684600 0 3509600 4066200 4903500 2873800 3415900 3431200 2992200 3163200 2051800 3437500 176310 3613500 3866700 4875900 2994700 3535400 3456700 2939800 3059700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 284380000 189720000 94665000 5520 2281 5150 29708;29709 35472 35472 1 FIGEGAR Unmodified 748.38679 0.38678794 1337 P62195;P62195-2 PSMC5 26S protease regulatory subunit 8 yes no 0 0 0 0 By MS/MS By MS/MS 3.6 1.02 1 1 2 1 1 4 34.222 34.245 2 0.007587 8451 20211116_3431_TMUAki_TMT10x_P_F4 101.21 56.681 5493500 8815700 1687.3 8057200 8262500 7785300 6334500 4206800 5198900 4074400 6508600 5113900 8223100 363520 8269200 7865500 7867500 6491000 4453800 5385100 3984700 6238000 6 6 1 6 6 6 6 6 6 6 6 2865500 4505500 0 4294200 5851800 5405300 3190000 2504300 3308000 2222400 3507900 2667400 4203400 193880 4412400 5538500 5372900 3378600 2684200 3367200 2182200 3377700 1 1 0 1 1 1 1 1 1 1 1 2627900 4310100 1687.3 3762900 2410700 2379900 3144500 1702500 1890900 1852000 3000700 2446500 4019700 169650 3856800 2327000 2494600 3112400 1769600 2017900 1802600 2860300 5 5 1 5 5 5 5 5 5 5 5 88517000 53313000 35204000 5521 1337 5151 29710;29711;29712;29713;29714 35473;35474 35473 2 FIGELFK Unmodified 852.47454 0.47454032 1511;216 O43432;O43432-4;O43432-3;Q04637;Q04637-3;Q04637-8;Q04637-5;Q04637-4;Q04637-9;Q04637-6;Q04637-7 EIF4G3;EIF4G1 Eukaryotic translation initiation factor 4 gamma 3;Eukaryotic translation initiation factor 4 gamma 1 no no 0 0 0 0 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 73.22 73.301 2 0.0026043 25450 20211116_3446_TMUAki_TMT10x_S_F7 123.96 11.212 47115000 77789000 0 76022000 54974000 72712000 54052000 46827000 37655000 45891000 56658000 43867000 72579000 3829900 77630000 52676000 73696000 54368000 48889000 39699000 44858000 54067000 4 4 0 4 4 4 4 4 4 4 4 27630000 43690000 0 43200000 34171000 54137000 33882000 26918000 21161000 26446000 31953000 25725000 40766000 2277400 44269000 32750000 53865000 33989000 28728000 22467000 25848000 30490000 2 2 0 2 2 2 2 2 2 2 2 19485000 34099000 0 32822000 20803000 18574000 20170000 19910000 16494000 19445000 24704000 18142000 31813000 1552500 33361000 19926000 19831000 20378000 20161000 17232000 19010000 23577000 2 2 0 2 2 2 2 2 2 2 2 4180800000 2725900000 1454900000 5522 216;1511 5152 29715;29716;29717;29718;29719;29720 35475;35476;35477;35478;35479;35480 35479 6 FIGPDQHR Unmodified 968.48281 0.48281359 2452 Q96EY7;Q96EY7-2 PTCD3 Pentatricopeptide repeat domain-containing protein 3, mitochondrial yes no 0 0 0 0 By MS/MS 4 0 1 1 31.019 31.053 3 0.035201 6787 20211116_3431_TMUAki_TMT10x_P_F4 49.423 37.468 301090 471590 0 532450 531630 526940 341940 266310 264450 280290 344920 280320 440270 25792 538810 504820 531300 354370 284340 275280 273170 330240 1 1 0 1 1 1 1 1 1 1 1 301090 471590 0 532450 531630 526940 341940 266310 264450 280290 344920 280320 440270 25792 538810 504820 531300 354370 284340 275280 273170 330240 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17886000 17886000 0 5523 2452 5153 29721 35481 35481 1 FIGSPPGYVGHEEGGQLTK Unmodified 1971.969 0.96904081 2766 Q9H078;Q9H078-3;Q9H078-2;Q9H078-5;Q9H078-4 CLPB Caseinolytic peptidase B protein homolog yes no 0 0 0 0 By MS/MS 6 0 1 1 51.472 51.604 3 1.839E-15 14463 20211116_3445_TMUAki_TMT10x_S_F6 126.19 114.75 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5524 2766 5154 29722 35482 35482 1 FIHDQTSPNPK Unmodified 1282.6306 0.63060004 1196 P53007 SLC25A1 Tricarboxylate transport protein, mitochondrial yes yes 0 0 0 0 By matching By MS/MS 5 0 2 1 1 33.613 33.678 3 0.002024 6855 20211116_3444_TMUAki_TMT10x_S_F5 72.289 54.963 157090 258520 2243.4 231640 164810 153920 156920 167380 167820 156590 213430 146280 241120 15223 237040 157960 161900 159920 169180 171870 153380 204470 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 157090 258520 2243.4 231640 164810 153920 156920 167380 167820 156590 213430 146280 241120 15223 237040 157960 161900 159920 169180 171870 153380 204470 1 1 1 1 1 1 1 1 1 1 1 44788000 39672000 5116200 5525 1196 5155 29723;29724 35483 35483 1 FIIENTDLAVANSIR Unmodified 1674.8941 0.89408495 731 P19387 POLR2C DNA-directed RNA polymerase II subunit RPB3 yes yes 0 0 0 0 By MS/MS 6 0 2 2 74.032 73.958 2;3 9.7908E-61 23706 20211116_3445_TMUAki_TMT10x_S_F6 303.31 245.35 1401100 2458400 6018.9 1909200 1634600 1432000 1599500 1301000 1234600 1291400 1657000 1304600 2291900 125040 1979400 1566800 1485300 1613000 1329100 1286900 1261600 1585400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1401100 2458400 6018.9 1909200 1634600 1432000 1599500 1301000 1234600 1291400 1657000 1304600 2291900 125040 1979400 1566800 1485300 1613000 1329100 1286900 1261600 1585400 1 1 1 1 1 1 1 1 1 1 1 294510000 0 294510000 5526 731 5156 29725;29726 35484;35485 35484 2 FIIENTDLAVANSIRR Unmodified 1830.9952 0.99519598 731 P19387 POLR2C DNA-directed RNA polymerase II subunit RPB3 yes yes 0 0 0 1 By MS/MS 1 0 1 1 63.061 62.797 3 3.2928E-08 21304 20211116_3439_TMUAki_TMT10x_S_F1 119.96 81.3 3340400 6558900 7808.7 5198900 4250100 3780500 3806700 5247900 4154100 3962000 4562000 3110300 6115100 296960 5378500 4064500 3971800 3895200 5223100 4225300 3922500 4388100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3340400 6558900 7808.7 5198900 4250100 3780500 3806700 5247900 4154100 3962000 4562000 3110300 6115100 296960 5378500 4064500 3971800 3895200 5223100 4225300 3922500 4388100 1 1 1 1 1 1 1 1 1 1 1 390820000 0 390820000 5527 731 5157 29727 35486 35486 1 FIIHAPPGEFNEVFNDVR Unmodified 2100.0429 0.042874453 1062 P47755;P47755-2 CAPZA2 F-actin-capping protein subunit alpha-2 yes no 0 0 0 0 By MS/MS By MS/MS 5.78 1.31 2 2 2 2 1 4 5 72.479 72.504 3 4.1782E-32 23041 20211116_3445_TMUAki_TMT10x_S_F6 197.15 186.3 61582000 101580000 718270 92095000 70041000 98195000 74068000 65345000 62824000 68372000 75403000 57342000 94748000 5493200 94713000 67290000 98920000 74572000 68187000 64851000 66651000 72349000 22 22 13 22 22 22 22 22 22 22 22 34465000 57111000 372560 50529000 35332000 68663000 41842000 37916000 36243000 40015000 43038000 32092000 53266000 3076300 52284000 34055000 68140000 41928000 40165000 37357000 38994000 41307000 12 12 6 12 12 12 12 12 12 12 12 27117000 44468000 345710 41567000 34710000 29532000 32227000 27429000 26581000 28358000 32364000 25251000 41482000 2416800 42430000 33235000 30780000 32644000 28022000 27494000 27658000 31042000 10 10 7 10 10 10 10 10 10 10 10 10472000000 5494200000 4977500000 5528 1062 5158 29728;29729;29730;29731;29732;29733;29734;29735;29736 35487;35488;35489;35490;35491;35492;35493;35494;35495;35496;35497;35498;35499;35500;35501;35502;35503;35504;35505;35506;35507;35508 35503 22 FIIPNVVK Unmodified 928.57459 0.57458871 462 P00338;P00338-3;P00338-2;P00338-5 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 0 By MS/MS By MS/MS 3.08 1.37 2 11 27 5 1 2 41 7 68.102 68.037 2;3 0.00043511 33685 20211116_3429_TMUAki_TMT10x_P_F2 140.53 68.293 166800000 270350000 1763500 254960000 200460000 268660000 166010000 202520000 183090000 180760000 207230000 155320000 252210000 15655000 261390000 191430000 271360000 170720000 208600000 186370000 177440000 199160000 50 50 26 50 50 50 50 50 50 50 50 95882000 151100000 1563500 142270000 126820000 202230000 103740000 113760000 103470000 103000000 115530000 89286000 140960000 9693400 146660000 121100000 200330000 106430000 119810000 105700000 101040000 111070000 43 43 23 43 43 43 43 43 43 43 43 70917000 119250000 199990 112690000 73641000 66427000 62268000 88759000 79624000 77763000 91698000 66032000 111250000 5961300 114730000 70327000 71026000 64293000 88788000 80672000 76401000 88084000 7 7 3 7 7 7 7 7 7 7 7 50405000000 27084000000 23322000000 5529 462 5159 29737;29738;29739;29740;29741;29742;29743;29744;29745;29746;29747;29748;29749;29750;29751;29752;29753;29754;29755;29756;29757;29758;29759;29760;29761;29762;29763;29764;29765;29766;29767;29768;29769;29770;29771;29772;29773;29774;29775;29776;29777;29778;29779;29780;29781;29782;29783;29784 35509;35510;35511;35512;35513;35514;35515;35516;35517;35518;35519;35520;35521;35522;35523;35524;35525;35526;35527;35528;35529;35530;35531;35532;35533;35534;35535;35536;35537;35538;35539;35540;35541;35542;35543;35544;35545;35546;35547;35548;35549;35550;35551;35552;35553;35554;35555;35556;35557;35558;35559;35560;35561;35562;35563;35564;35565;35566;35567;35568;35569 35514 61 FIIPQIVK Unmodified 956.60589 0.60588884 531 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 0 By MS/MS By MS/MS 3.88 1.23 2 2 11 26 7 2 35 15 64.95 64.915 2;3 0.00043511 25701 20211116_3430_TMUAki_TMT10x_P_F3 140.53 87.357 162190000 272210000 914850 263500000 181100000 257470000 168780000 173820000 153040000 169890000 198670000 151020000 253970000 14028000 269340000 173360000 260790000 171360000 180830000 158000000 166080000 190240000 36 37 17 37 37 37 37 37 37 37 37 87295000 141670000 643650 137150000 108620000 184970000 94005000 91642000 81596000 90510000 104180000 81283000 132180000 7809500 140950000 103800000 183390000 95734000 97852000 84354000 88444000 99801000 25 26 11 26 26 26 26 26 26 26 26 74892000 130540000 271200 126360000 72479000 72505000 74774000 82174000 71448000 79377000 94491000 69733000 121790000 6218500 128400000 69557000 77402000 75624000 82977000 73650000 77639000 90438000 11 11 6 11 11 11 11 11 11 11 11 66987000000 34003000000 32985000000 5530 531 5160 29785;29786;29787;29788;29789;29790;29791;29792;29793;29794;29795;29796;29797;29798;29799;29800;29801;29802;29803;29804;29805;29806;29807;29808;29809;29810;29811;29812;29813;29814;29815;29816;29817;29818;29819;29820;29821;29822;29823;29824;29825;29826;29827;29828;29829;29830;29831;29832;29833;29834 35570;35571;35572;35573;35574;35575;35576;35577;35578;35579;35580;35581;35582;35583;35584;35585;35586;35587;35588;35589;35590;35591;35592;35593;35594;35595;35596;35597;35598;35599;35600;35601;35602;35603;35604;35605;35606;35607;35608;35609;35610;35611;35612;35613;35614;35615;35616;35617;35618;35619;35620;35621;35622;35623;35624;35625 35573 56 FIIQSEKPPHYLESR Unmodified 1842.9628 0.96283322 675 P14735;P14735-2 IDE Insulin-degrading enzyme yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 47.088 47.108 4 2.2622E-19 12452 20211116_3447_TMUAki_TMT10x_S_F8 170.11 135.43 2353400 4381900 60742 4910400 3703200 4477700 2645000 3850900 4020000 3468300 3477900 2191400 4090700 238650 4965600 3525800 4574200 2780900 3935600 4010300 3403100 3371800 2 2 1 2 2 2 2 2 2 2 2 1201400 2029500 60742 2461600 2507200 3275600 1609700 1784500 1890300 1577500 1626000 1119100 1895300 174510 2492900 2385200 3253200 1688400 1883500 1901400 1549200 1576700 1 1 1 1 1 1 1 1 1 1 1 1152000 2352400 0 2448800 1196000 1202100 1035400 2066400 2129700 1890900 1851900 1072300 2195400 64140 2472800 1140700 1320900 1092500 2052100 2108900 1853900 1795100 1 1 0 1 1 1 1 1 1 1 1 753180000 272150000 481020000 5531 675 5161 29835;29836 35626;35627 35627 2 FIITALPTIYHCK Unmodified 1575.8483 0.84832073 2799 Q9H3N1 TMX1 Thioredoxin-related transmembrane protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.83 1.07 3 2 1 4 2 71.104 71.088 3 8.0062E-10 22515 20211116_3445_TMUAki_TMT10x_S_F6 137.16 114.28 15940000 27230000 138830 25479000 19032000 26171000 18836000 18193000 16026000 17754000 19479000 14843000 25402000 1441600 26127000 18249000 26440000 19029000 18887000 16549000 17357000 18684000 5 5 3 5 5 5 5 5 5 5 5 8458500 14243000 135850 12984000 9208000 18065000 10852000 9565400 8514700 9609600 9954800 7876600 13286000 821320 13410000 8877500 17899000 10849000 10156000 8815700 9383500 9558500 3 3 2 3 3 3 3 3 3 3 3 7481800 12987000 2982.1 12495000 9823900 8106700 7984300 8627900 7511100 8144000 9524600 6966000 12116000 620300 12716000 9371200 8541000 8180400 8731400 7733400 7973800 9125700 2 2 1 2 2 2 2 2 2 2 2 2043900000 959530000 1084400000 5532 2799 5162 29837;29838;29839;29840;29841;29842 35628;35629;35630;35631;35632;35633;35634 35634 7 FIKIDGK Unmodified 819.48544 0.48543935 1362 P62701 RPS4X 40S ribosomal protein S4, X isoform no no 0 0 0 1 By MS/MS 4.5 3.5 1 1 2 47.81 47.643 3 0.028262 15105 20211116_3439_TMUAki_TMT10x_S_F1 64.42 13.361 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5533 1362 5163 29843;29844 35635;35636 35635 2 FIKPLSNAYHELAQVYSTNNPSELR Unmodified 2890.4614 0.46135645 3199 Q9UNS2;Q9UNS2-2 COPS3 COP9 signalosome complex subunit 3 yes no 0 0 0 1 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 74.283 74.164 4 3.1692E-48 25954 20211116_3430_TMUAki_TMT10x_P_F3 204.18 192.88 15532000 26819000 155460 24898000 17602000 26688000 19751000 17547000 17045000 18751000 19895000 14463000 25017000 1431300 25563000 16940000 26872000 19838000 18338000 17560000 18264000 19104000 9 9 6 9 9 9 9 9 9 9 9 9270200 15556000 53373 14670000 9523700 18676000 11357000 10085000 9554900 11032000 11088000 8631900 14512000 816400 15088000 9180700 18586000 11369000 10715000 9853800 10735000 10649000 5 5 3 5 5 5 5 5 5 5 5 6262300 11262000 102080 10229000 8078800 8012200 8393900 7462200 7489600 7719100 8807400 5831300 10505000 614930 10475000 7758800 8286600 8469800 7622500 7705700 7528300 8455400 4 4 3 4 4 4 4 4 4 4 4 4860600000 2647000000 2213600000 5534 3199 5164 29845;29846;29847;29848;29849;29850 35637;35638;35639;35640;35641;35642;35643;35644;35645 35640 9 FILLACDGLFK Unmodified 1295.6948 0.6947802 2771 Q9H0C8 ILKAP Integrin-linked kinase-associated serine/threonine phosphatase 2C yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 4 2 2 80.167 80.111 2 4.9462E-08 29252 20211116_3441_TMUAki_TMT10x_S_F3 147.2 89.601 6318700 10290000 0 10065000 6647600 6341500 7451700 5301700 3696400 6334700 7443400 5882900 9600500 475080 10228000 6390800 6666600 7400300 5473800 4057800 6144200 7064300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6318700 10290000 0 10065000 6647600 6341500 7451700 5301700 3696400 6334700 7443400 5882900 9600500 475080 10228000 6390800 6666600 7400300 5473800 4057800 6144200 7064300 1 1 0 1 1 1 1 1 1 1 1 829330000 494510000 334820000 5535 2771 5165 29851;29852;29853;29854 35646;35647;35648 35647 3 FIMESGAK Oxidation (M) 897.4266 0.42660385 783 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 1 0 By MS/MS 5.5 0.5 1 1 2 39.594 39.757 2 0.019272 9656 20211116_3445_TMUAki_TMT10x_S_F6 79.116 39.013 344810 576680 8221.9 660310 290930 264640 293640 302670 306010 277470 489540 321120 538420 35495 661810 279530 294860 298090 305060 317290 272030 466560 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 344810 576680 8221.9 660310 290930 264640 293640 302670 306010 277470 489540 321120 538420 35495 661810 279530 294860 298090 305060 317290 272030 466560 1 1 1 1 1 1 1 1 1 1 1 16773000 0 16773000 5536 783 5166 29855;29856 35649;35650 35650 920 2 FINDCTELFR Unmodified 1313.6074 0.60742176 390 O94874;O94874-3;O94874-2 UFL1 E3 UFM1-protein ligase 1 yes no 0 0 0 0 By MS/MS 5 0 1 1 64.913 65.051 2 0.075366 20792 20211116_3433_TMUAki_TMT10x_P_F5 58.63 37.873 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5537 390 5167 29857 35651 35651 1 FINHLCDPNIIPVR Unmodified 1706.8926 0.89264516 2512 Q96KQ7;Q96KQ7-2 EHMT2 Histone-lysine N-methyltransferase EHMT2 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 1 1 1 1 59.712 59.713 3 9.0091E-07 17949 20211116_3428_TMUAki_TMT10x_P_F1 116.19 102.28 10634000 16569000 315220 16244000 12180000 15365000 12177000 11311000 10074000 10613000 13890000 9903400 15459000 1197000 16582000 11697000 15616000 12287000 11684000 10476000 10394000 13281000 3 3 3 3 3 3 3 3 3 3 3 7448200 10947000 239190 10849000 8654800 12019000 8738400 7276700 6789500 6824400 9752300 6936800 10214000 857330 11092000 8315200 12066000 8799000 7624300 7097500 6683700 9316000 2 2 2 2 2 2 2 2 2 2 2 3185500 5621900 76031 5395500 3524700 3345800 3439000 4034500 3284600 3788500 4138100 2966500 5245000 339710 5489700 3382100 3550400 3488100 4059900 3378600 3710200 3965400 1 1 1 1 1 1 1 1 1 1 1 793850000 559320000 234530000 5538 2512 5168 29858;29859 35652;35653;35654 35653 3 FINPAIVSPYEAGILDK Unmodified 1845.9877 0.98765098 756 P21359;P21359-2;P21359-6;P21359-4 NF1 Neurofibromin;Neurofibromin truncated yes no 0 0 0 0 By MS/MS 8 0 1 1 79.099 79.069 3 0.00014186 25422 20211116_3447_TMUAki_TMT10x_S_F8 73.983 54.144 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5539 756 5169 29860 35655 35655 1 FINQLLGVVPLSTPTEDK Unmodified 1970.0724 0.072443247 1745 Q14CX7;Q14CX7-2 NAA25 N-alpha-acetyltransferase 25, NatB auxiliary subunit yes no 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 80.204 80.2 3 4.6022E-06 26508 20211116_3436_TMUAki_TMT10x_P_F8 91.401 74.119 5891700 10036000 132240 8123700 5472700 11517000 6615700 6148900 6173800 6578800 7627200 5486200 9357400 538470 8473300 5279900 11403000 6637100 6535600 6351700 6407500 7312700 2 2 1 2 2 2 2 2 2 2 2 5891700 10036000 132240 8123700 5472700 11517000 6615700 6148900 6173800 6578800 7627200 5486200 9357400 538470 8473300 5279900 11403000 6637100 6535600 6351700 6407500 7312700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 679930000 438770000 241160000 5540 1745 5170 29861;29862;29863 35656;35657;35658 35657 3 FIPCSPFSDYVYKR Unmodified 1777.8498 0.84977729 1692 Q14195-2;Q14195 DPYSL3 Dihydropyrimidinase-related protein 3 yes no 0 0 0 1 By MS/MS By MS/MS 4.4 1.85 2 2 1 3 2 68.908 68.7 2;3 1.3659E-23 21947 20211116_3431_TMUAki_TMT10x_P_F4 190.37 171.09 43081000 68981000 360310 64737000 58663000 56501000 51917000 43724000 38497000 43797000 52926000 40113000 64351000 3913400 66219000 56087000 57780000 52599000 45102000 40264000 42771000 50609000 7 7 4 7 7 7 7 7 7 7 7 16555000 26814000 304320 24344000 17223000 29715000 19816000 16974000 15133000 17758000 19860000 15416000 25011000 1624200 25090000 16595000 29654000 19820000 17924000 15768000 17312000 19012000 3 3 2 3 3 3 3 3 3 3 3 26526000 42167000 55987 40393000 41440000 26786000 32101000 26750000 23364000 26038000 33066000 24697000 39339000 2289300 41129000 39492000 28126000 32779000 27178000 24495000 25459000 31597000 4 4 2 4 4 4 4 4 4 4 4 5318700000 2122700000 3196100000 5541 1692 5171 29864;29865;29866;29867;29868 35659;35660;35661;35662;35663;35664;35665;35666 35660 8 FIPEFIR Unmodified 920.51199 0.51198846 287 O60762 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 yes yes 0 0 0 0 By matching By MS/MS 8 0 2 1 1 68.291 68.283 2 0.033672 21116 20211116_3447_TMUAki_TMT10x_S_F8 77.984 51.813 4635400 7343000 0 7010300 5375700 5079800 4895400 4558800 4324700 4883600 5462600 4315000 6850600 269230 7146300 5134200 5282400 4973100 4671100 4465000 4756200 5234400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4635400 7343000 0 7010300 5375700 5079800 4895400 4558800 4324700 4883600 5462600 4315000 6850600 269230 7146300 5134200 5282400 4973100 4671100 4465000 4756200 5234400 1 1 0 1 1 1 1 1 1 1 1 474950000 146700000 328250000 5542 287 5172 29869;29870 35667 35667 1 FIPEGSQR Unmodified 932.47158 0.4715802 481 P04062;P04062-4;P04062-2;P04062-5 GBA Glucosylceramidase yes no 0 0 0 0 By MS/MS 4 0 2 2 34.562 34.649 2 0.017954 8671 20211116_3442_TMUAki_TMT10x_S_F4 69.998 40.66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5543 481 5173 29871;29872 35668;35669 35668 2 FIPLIPIPER Unmodified 1193.7172 0.7172302 1570 Q12860;Q12860-2;Q12860-3 CNTN1 Contactin-1 yes no 0 0 0 0 By MS/MS 2 0 1 1 78.576 78.552 2 0.00043571 25896 20211116_3440_TMUAki_TMT10x_S_F2 109.11 84.775 4276100 7822300 29489 7141500 6580300 5045400 6006200 4689200 4137200 4649700 5630200 3981700 7296500 414270 7302200 6296800 5261200 6064500 4784400 4343600 4542800 5385100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4276100 7822300 29489 7141500 6580300 5045400 6006200 4689200 4137200 4649700 5630200 3981700 7296500 414270 7302200 6296800 5261200 6064500 4784400 4343600 4542800 5385100 1 1 1 1 1 1 1 1 1 1 1 479830000 0 479830000 5544 1570 5174 29873 35670 35670 1 FIPLSEPAPVPPIPNEQQLAR Unmodified 2312.2529 0.25286723 2594 Q99627;Q99627-2 COPS8 COP9 signalosome complex subunit 8 yes no 0 0 0 0 By MS/MS By MS/MS 7 0.577 1 4 1 4 2 77.519 77.56 2;3 7.5027E-19 26846 20211116_3435_TMUAki_TMT10x_P_F7 145.43 133.07 22386000 36971000 538030 33411000 23264000 38144000 26627000 20250000 19355000 22585000 27841000 20847000 34484000 2268600 34407000 22417000 38165000 26608000 21562000 20309000 21962000 26595000 7 7 4 7 7 7 7 7 7 7 7 17917000 29131000 538030 26874000 17488000 33166000 20894000 16321000 16683000 18593000 22012000 16686000 27174000 1945600 27669000 16884000 33020000 20885000 17513000 17345000 18065000 21069000 6 6 4 6 6 6 6 6 6 6 6 4469300 7839300 0 6537700 5775900 4978400 5733500 3928800 2671900 3992600 5829400 4160800 7310000 323050 6738200 5532900 5144300 5723200 4049400 2964200 3896700 5525700 1 1 0 1 1 1 1 1 1 1 1 7156400000 3962800000 3193600000 5545 2594 5175 29874;29875;29876;29877;29878;29879 35671;35672;35673;35674;35675;35676;35677 35673 7 FIPPWLKK Unmodified 1027.6219 0.62187326 220 O43491;O43491-4;O43491-2;O43491-3 EPB41L2 Band 4.1-like protein 2 yes no 0 0 0 1 By MS/MS 7 0 1 1 65.663 66.068 3 0.094951 22405 20211116_3446_TMUAki_TMT10x_S_F7 41.029 20.159 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5546 220 5176 29880 35678 35678 1 FIPRENGVYLIDVK Unmodified 1661.9141 0.91409211 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 1 By MS/MS 8 0 1 1 64.396 64.37 3 0.00078687 19449 20211116_3447_TMUAki_TMT10x_S_F8 77.068 55.195 3379800 5738100 174230 5665900 4682400 3341200 3755200 4569100 4124500 4308900 4426200 3148200 5354000 460830 5750500 4477000 3574800 3869000 4575800 4190500 4219000 4260400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3379800 5738100 174230 5665900 4682400 3341200 3755200 4569100 4124500 4308900 4426200 3148200 5354000 460830 5750500 4477000 3574800 3869000 4575800 4190500 4219000 4260400 1 1 1 1 1 1 1 1 1 1 1 337860000 0 337860000 5547 755 5177 29881 35679 35679 1 FIQAWQSLPEFGITHFIAR Unmodified 2260.1793 0.17930835 2406 Q96AC1;Q96AC1-2;Q96AC1-3 FERMT2 Fermitin family homolog 2 yes no 0 0 0 0 By MS/MS 6 0 1 1 79.79 79.782 3 0.00090455 26012 20211116_3445_TMUAki_TMT10x_S_F6 65.784 37.933 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5548 2406 5178 29882 35680 35680 1 FIQENIFGICPHMTEDNK Unmodified 2192.0031 0.0030598275 868 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 By MS/MS By MS/MS 6.6 0.49 2 3 2 3 70.037 70.398 3 1.263E-30 22212 20211116_3445_TMUAki_TMT10x_S_F6 171.03 158.41 2534900 4639200 0 5567300 2889900 2137300 3194800 1475000 1421400 1944800 2956600 2360200 4332300 213560 5562700 2778500 2374000 3169800 1547100 1578100 1880100 2804600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2534900 4639200 0 5567300 2889900 2137300 3194800 1475000 1421400 1944800 2956600 2360200 4332300 213560 5562700 2778500 2374000 3169800 1547100 1578100 1880100 2804600 1 1 0 1 1 1 1 1 1 1 1 1059000000 569110000 489940000 5549 868 5179 29883;29884;29885;29886;29887 35681;35682;35683;35684 35682 4 FIQENIFGICPHMTEDNK Oxidation (M) 2207.998 0.99797445 868 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 1 0 By matching By MS/MS 6 0 2 1 1 64.652 64.633 3 5.4571E-06 19895 20211116_3445_TMUAki_TMT10x_S_F6 89.261 78.885 1642100 3112000 0 3145700 1972100 2164300 2051500 2118300 2056000 2453300 2252500 1529000 2904000 0 3192100 1892900 2264300 2076900 2166100 2098400 2382200 2166800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1642100 3112000 0 3145700 1972100 2164300 2051500 2118300 2056000 2453300 2252500 1529000 2904000 0 3192100 1892900 2264300 2076900 2166100 2098400 2382200 2166800 1 1 0 1 1 1 1 1 1 1 1 571230000 287320000 283910000 5550 868 5179 29888;29889 35685 35685 1035 1 FIQPNIGELPTALK Unmodified 1539.8661 0.86607929 1672 Q14008;Q14008-2;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 3 1 2 76.932 76.9 3 2.5414E-06 25021 20211116_3428_TMUAki_TMT10x_P_F1 106.32 82.718 3040700 5042800 42248 4267900 3243000 6173600 3899500 3911800 3963900 3571900 3848200 2831500 4702600 294300 4437200 3128600 6120900 3923100 4081200 4025600 3502500 3715800 1 1 1 1 1 1 1 1 1 1 1 3040700 5042800 42248 4267900 3243000 6173600 3899500 3911800 3963900 3571900 3848200 2831500 4702600 294300 4437200 3128600 6120900 3923100 4081200 4025600 3502500 3715800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 825910000 434630000 391280000 5551 1672 5180 29890;29891;29892 35686;35687 35686 2 FIQQTYPSGGEEQAQYCR Unmodified 2160.9535 0.9534671 2301 Q8WUM4;Q8WUM4-2;Q8WUM4-3 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 48.192 48.364 3 1.1456E-40 14108 20211116_3442_TMUAki_TMT10x_S_F4 191.89 187.99 2917400 5471000 34556 6396000 4922000 5917300 3578700 5400900 5479100 4585100 5206200 2716200 5108500 237850 6452500 4683600 6046100 3759100 5492900 5481200 4511700 5030700 4 4 1 4 4 4 4 4 4 4 4 1450100 2794100 0 3176600 3844300 4819000 2692700 2631400 2656700 2218700 2482000 1349800 2608600 96935 3238200 3653400 4758800 2790400 2773500 2698100 2183900 2399700 2 2 0 2 2 2 2 2 2 2 2 1467300 2677000 34556 3219400 1077800 1098300 886030 2769400 2822400 2366400 2724200 1366400 2499900 140920 3214300 1030200 1287200 968710 2719400 2783100 2327800 2631000 2 2 1 2 2 2 2 2 2 2 2 531270000 323200000 208060000 5552 2301 5181 29893;29894;29895 35688;35689;35690;35691;35692 35690 5 FIQVHPITK Unmodified 1081.6284 0.6284152 2949 Q9NTZ6 RBM12 RNA-binding protein 12 yes yes 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 47.614 47.4 3 0.042144 13180 20211116_3440_TMUAki_TMT10x_S_F2 43.308 23.695 6828600 11246000 35137 11164000 6124100 6663400 7307200 7908000 9361200 7607200 9506200 6358300 10493000 589010 11328000 5903900 7093800 7413800 7968500 9438700 7442000 9165800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6828600 11246000 35137 11164000 6124100 6663400 7307200 7908000 9361200 7607200 9506200 6358300 10493000 589010 11328000 5903900 7093800 7413800 7968500 9438700 7442000 9165800 2 2 2 2 2 2 2 2 2 2 2 155360000 0 155360000 5553 2949 5182 29896;29897;29898 35693;35694;35695 35694 3 FISLASLEYSDYSK Unmodified 1621.7876 0.78755419 1696 Q14232;Q14232-2 EIF2B1 Translation initiation factor eIF-2B subunit alpha yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.707 1 2 5 4 4 66.167 66.21 2;3 4.9454E-23 27111 20211116_3435_TMUAki_TMT10x_P_F7 180.97 160.66 33195000 56758000 417800 45318000 56953000 33724000 39081000 28833000 23274000 26278000 37387000 30910000 52919000 3352000 46866000 54177000 34961000 40087000 29486000 24870000 25770000 35629000 7 7 4 7 7 7 7 7 7 7 7 5302500 8753900 6550.9 7465000 5492300 10097000 6666000 5643600 5422900 6116900 6613300 4936600 8163500 370460 7745900 5291100 10024000 6661800 5977000 5613500 5954600 6342800 4 4 2 4 4 4 4 4 4 4 4 27892000 48004000 411250 37853000 51460000 23626000 32415000 23189000 17851000 20161000 30773000 25973000 44755000 2981600 39120000 48886000 24936000 33425000 23509000 19257000 19815000 29286000 3 3 2 3 3 3 3 3 3 3 3 4024100000 1426600000 2597500000 5554 1696 5183 29899;29900;29901;29902;29903;29904;29905;29906 35696;35697;35698;35699;35700;35701;35702 35696 7 FISNPNSIILAVTAANTDMATSEALK Oxidation (M) 2707.3738 0.37384658 87 O00429;O00429-2;O00429-4;O00429-3;O00429-5;O00429-9;O00429-8;O00429-6 DNM1L Dynamin-1-like protein yes no 0 0 1 0 By MS/MS By MS/MS 6.4 2.73 1 1 3 2 3 80.014 79.999 3;4 3.2842E-12 25802 20211116_3447_TMUAki_TMT10x_S_F8 108.49 95.811 4606100 7876700 116770 7034500 4487500 8417200 7052100 5442500 7120700 7328700 6670100 4289400 7346700 464340 7256500 4372700 8422800 7021300 5740100 7225100 7079900 6448400 4 4 2 4 4 4 4 4 4 4 4 1230200 1860500 0 1759300 1005600 2265600 1346800 1200600 1526200 1386100 1388900 1145300 1735600 79368 1809500 971490 2252900 1353800 1280000 1539900 1346100 1344100 1 1 0 1 1 1 1 1 1 1 1 3376000 6016300 116770 5275100 3481900 6151600 5705300 4241900 5594500 5942600 5281200 3144200 5611000 384980 5447000 3401200 6169900 5667400 4460200 5685200 5733800 5104300 3 3 2 3 3 3 3 3 3 3 3 3076600000 1286000000 1790500000 5555 87 5184 29907;29908;29909;29910;29911 35703;35704;35705;35706;35707 35706 66 5 FISNPNSIILAVTAANTDMATSEALK Unmodified 2691.3789 0.37893196 87 O00429;O00429-2;O00429-4;O00429-3;O00429-5;O00429-9;O00429-8;O00429-6 DNM1L Dynamin-1-like protein yes no 0 0 0 0 By MS/MS 8 0 1 1 81.201 81.198 3 2.0767E-17 26313 20211116_3447_TMUAki_TMT10x_S_F8 125.39 113.26 434220 743820 18182 734610 502720 509420 663620 292690 287180 372440 485750 404440 694030 53904 746700 487180 527990 653070 310910 315670 360460 462440 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 434220 743820 18182 734610 502720 509420 663620 292690 287180 372440 485750 404440 694030 53904 746700 487180 527990 653070 310910 315670 360460 462440 1 1 1 1 1 1 1 1 1 1 1 115700000 0 115700000 5556 87 5184 29912 35708 35708 1 FITDNTVEER Unmodified 1222.583 0.58298115 260 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 43.669 43.528 2 2.8912E-33 14470 20211116_3441_TMUAki_TMT10x_S_F3 277.12 223.29 4488300 7245800 36849 9297800 9298700 7103100 5015800 6442100 7348100 5051700 7205100 4179200 6768700 464940 9307500 8810000 7356700 5383900 6541700 7368300 4991000 6955000 5 5 4 5 5 5 5 5 5 5 5 1965900 3099700 8717.9 4101900 6810600 5218400 2702100 2780100 3309700 2223700 3044100 1830400 2896100 230080 4130600 6427000 5192500 2974500 2933000 3331000 2194700 2944800 2 2 1 2 2 2 2 2 2 2 2 2522400 4146100 28131 5195900 2488100 1884700 2313700 3662100 4038500 2828000 4161000 2348800 3872700 234860 5177000 2383000 2164200 2409400 3608700 4037300 2796400 4010200 3 3 3 3 3 3 3 3 3 3 3 423080000 274570000 148510000 5557 260 5185 29913;29914;29915;29916 35709;35710;35711;35712;35713 35713 5 FITEIWHPNVDK Unmodified 1497.7616 0.76161421 1341 P62253 UBE2G1 Ubiquitin-conjugating enzyme E2 G1;Ubiquitin-conjugating enzyme E2 G1, N-terminally processed yes yes 0 0 0 0 By MS/MS 7 0 1 1 65.169 65.574 3 0.00046616 22234 20211116_3446_TMUAki_TMT10x_S_F7 80.69 59.133 4392300 7225900 42802 8313600 4010100 3366500 4234100 3122500 2539800 3163300 4839900 4090000 6746600 398690 8330500 3853300 3729200 4230700 3188300 2739500 3087800 4597700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4392300 7225900 42802 8313600 4010100 3366500 4234100 3122500 2539800 3163300 4839900 4090000 6746600 398690 8330500 3853300 3729200 4230700 3188300 2739500 3087800 4597700 1 1 1 1 1 1 1 1 1 1 1 455580000 0 455580000 5558 1341 5186 29917 35714 35714 1 FITHAPPGEFNEVFNDVR Unmodified 2088.0065 0.0064889465 1192 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.75 1.53 1 2 2 3 2 2 5 7 64.558 64.6 2;3 2.1254E-40 19492 20211116_3444_TMUAki_TMT10x_S_F5 196.11 179.08 93648000 151100000 1113200 144910000 116220000 159420000 111010000 118380000 124930000 123400000 123470000 87204000 140970000 7661200 148490000 111370000 160590000 113300000 122590000 126440000 120310000 119150000 19 19 17 19 19 19 19 19 19 19 19 47266000 75678000 631210 76049000 59210000 103800000 61135000 60180000 62601000 62345000 60556000 44014000 70617000 4214400 77972000 56860000 103050000 61956000 63453000 63549000 60800000 58480000 9 9 8 9 9 9 9 9 9 9 9 46382000 75421000 481960 68860000 57009000 55623000 49872000 58204000 62332000 61053000 62914000 43189000 70352000 3446800 70514000 54513000 57540000 51346000 59133000 62888000 59510000 60673000 10 10 9 10 10 10 10 10 10 10 10 24561000000 11776000000 12785000000 5559 1192 5187 29918;29919;29920;29921;29922;29923;29924;29925;29926;29927;29928;29929 35715;35716;35717;35718;35719;35720;35721;35722;35723;35724;35725;35726;35727;35728;35729;35730;35731;35732;35733;35734;35735 35732 21 FITIFGTR Unmodified 953.53345 0.53345218 564 P08758 ANXA5 Annexin A5 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 1.12 2 2 2 2 4 4 69.909 69.829 2 0.00043058 22709 20211116_3433_TMUAki_TMT10x_P_F5 147.06 83.496 44169000 71830000 32458 69554000 54880000 63999000 51684000 49121000 49052000 53772000 54813000 41123000 67017000 3462900 71034000 52518000 65206000 52511000 50833000 50222000 52325000 52698000 8 8 1 8 8 8 8 8 8 8 8 19080000 29562000 32458 29061000 22036000 36627000 23100000 20528000 20571000 22201000 23219000 17764000 27583000 1461200 29795000 21145000 36485000 23297000 21734000 21132000 21613000 22316000 3 3 1 3 3 3 3 3 3 3 3 25089000 42268000 0 40493000 32844000 27372000 28584000 28593000 28481000 31572000 31594000 23358000 39434000 2001700 41239000 31373000 28721000 29214000 29099000 29090000 30712000 30382000 5 5 0 5 5 5 5 5 5 5 5 5199500000 2454700000 2744800000 5560 564 5188 29930;29931;29932;29933;29934;29935;29936;29937 35736;35737;35738;35739;35740;35741;35742;35743;35744 35738 9 FITRPAK Unmodified 831.49667 0.49667274 2682 Q9BV38 WDR18 WD repeat-containing protein 18 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 34.17 34.024 3 0.010885 10594 20211116_3441_TMUAki_TMT10x_S_F3 87.435 66.533 3556900 5331300 0 5106900 4724400 5702300 4069900 3401600 3774000 3516000 4443700 3311700 4973800 294820 5234600 4512400 5720700 4153300 3578100 3876100 3429200 4265900 3 3 0 3 3 3 3 3 3 3 3 2412000 3589600 0 3437000 3563300 4656400 2728600 2347900 2687600 2460700 3048600 2245700 3348900 205260 3535400 3395000 4616500 2810200 2507100 2748700 2398600 2929700 2 2 0 2 2 2 2 2 2 2 2 1144900 1741700 0 1669800 1161100 1045900 1341200 1053700 1086500 1055300 1395100 1066000 1624900 89560 1699200 1117400 1104200 1343100 1071000 1127400 1030600 1336200 1 1 0 1 1 1 1 1 1 1 1 94405000 64293000 30112000 5561 2682 5189 29938;29939;29940 35745;35746;35747 35747 3 FITRPDVK Unmodified 974.55492 0.5549159 2669 Q9BTW9;Q9BTW9-4;Q9BTW9-5 TBCD Tubulin-specific chaperone D yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 38.637 38.983 3 0.01261 9015 20211116_3447_TMUAki_TMT10x_S_F8 68.456 28.454 2633400 4134900 73028 4263100 3841900 3636800 3114400 2826300 2701300 2552200 3467100 2452500 3858800 303310 4330600 3669900 3725400 3184400 2906300 2793300 2503900 3320800 3 3 3 3 3 3 3 3 3 3 3 1215300 1781400 28892 1970100 2451900 2244500 1503100 1221500 1216800 1142000 1561400 1131800 1662900 145010 2000600 2328900 2246600 1565400 1291200 1262600 1118600 1495500 2 2 2 2 2 2 2 2 2 2 2 1418000 2353500 44136 2293000 1389900 1392300 1611300 1604800 1484500 1410200 1905700 1320600 2195800 158300 2330000 1341000 1478700 1619000 1615100 1530700 1385300 1825300 1 1 1 1 1 1 1 1 1 1 1 105680000 42733000 62944000 5562 2669 5190 29941;29942;29943 35748;35749;35750 35750 3 FITYPFDQNR Unmodified 1299.6248 0.62478638 2207 Q8N7H5;Q8N7H5-3;Q8N7H5-2 PAF1 RNA polymerase II-associated factor 1 homolog yes no 0 0 0 0 By MS/MS 8 0 1 1 65.386 65.332 2 0.00013981 19828 20211116_3447_TMUAki_TMT10x_S_F8 93.166 60.811 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5563 2207 5191 29944 35751 35751 1 FIVCLNK Unmodified 892.48406 0.48405915 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS 3 0 1 1 61.935 61.5 2 0.051313 21858 20211116_3441_TMUAki_TMT10x_S_F3 68.398 35.928 6772400 10961000 0 12705000 6009800 5053000 5401900 6263400 5498300 6019900 8009000 6305300 10234000 491700 12724000 5743300 5646900 5514200 6299800 5678400 5889400 7648300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6772400 10961000 0 12705000 6009800 5053000 5401900 6263400 5498300 6019900 8009000 6305300 10234000 491700 12724000 5743300 5646900 5514200 6299800 5678400 5889400 7648300 1 1 0 1 1 1 1 1 1 1 1 266240000 0 266240000 5564 1433 5192 29945 35752 35752 1 FIVDGWHEMDAENPLHQPSPSLNK Oxidation (M) 2776.2915 0.29151393 1866 Q16836;Q16836-3;Q16836-2 HADH Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 6 0 2 1 1 61.226 61.243 4 1.5005E-07 18053 20211116_3434_TMUAki_TMT10x_P_F6 87.319 81.7 7407000 14365000 311530 13455000 9789300 13776000 9734800 9067300 8267000 10688000 11340000 6899000 13401000 937790 13795000 9404000 13909000 9831900 9505200 8583500 10371000 10844000 2 2 2 2 2 2 2 2 2 2 2 3224300 5947500 173500 5945800 4172300 8250000 4672700 3562300 3590900 4310400 4385100 3003400 5549700 442280 6100200 4023700 8157100 4680100 3880900 3728700 4178900 4205600 1 1 1 1 1 1 1 1 1 1 1 4182700 8417800 138040 7508800 5617000 5526200 5062100 5505000 4676000 6377400 6954600 3895600 7851300 495510 7694800 5380300 5751500 5151800 5624300 4854800 6192500 6638300 1 1 1 1 1 1 1 1 1 1 1 997020000 430860000 566160000 5565 1866 5193 29946;29947 35753;35754 35753 2481 2 FIVNTLK Unmodified 833.50109 0.50108942 828 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 58.292 58.006 2 0.0084064 17561 20211116_3440_TMUAki_TMT10x_S_F2 101.99 32.644 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5566 828 5194 29948;29949;29950;29951 35755;35756;35757;35758 35757 4 FIYEGSSDFSCLPTFGVIIGQK Unmodified 2464.1984 0.1984484 1161 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 80.927 80.917 3 2.1885E-14 26856 20211116_3440_TMUAki_TMT10x_S_F2 131.11 116.8 3618100 5778600 0 5677300 4247600 5215600 4269000 3617500 3496200 3971700 4721500 3368500 5391700 269570 5792000 4070800 5305900 4305200 3769300 3634100 3864400 4516700 2 2 0 2 2 2 2 2 2 2 2 1619500 2701000 0 2614800 1386200 2772600 1759600 1768200 1619800 1840800 2125600 1507600 2520000 93914 2676000 1336100 2792300 1761000 1850700 1671900 1794800 2034900 1 1 0 1 1 1 1 1 1 1 1 1998600 3077600 0 3062500 2861400 2443000 2509500 1849300 1876400 2130900 2595900 1860900 2871700 175660 3116100 2734600 2513600 2544300 1918700 1962200 2069500 2481900 1 1 0 1 1 1 1 1 1 1 1 669520000 332310000 337210000 5567 1161 5195 29952;29953 35759;35760 35760 2 FKAQQDQLVLIFAGK Unmodified 1704.9563 0.95629128 2932 Q9NRR5;Q9NRR5-2 UBQLN4 Ubiquilin-4 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 75.814 75.71 3 9.6066E-07 25288 20211116_3442_TMUAki_TMT10x_S_F4 100.42 85.65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5568 2932 5196 29954;29955 35761;35762 35762 2 FKDDVMPATYCEIDLDK Oxidation (M) 2074.9227 0.92274382 2876 Q9HD45 TM9SF3 Transmembrane 9 superfamily member 3 yes yes 0 0 1 1 By MS/MS 6 0 1 1 60.984 61.023 3 0.013988 18008 20211116_3434_TMUAki_TMT10x_P_F6 50.957 35.703 2466200 3946500 22799 3720500 3741500 5433300 2923800 2795700 2777100 2955700 3023400 2296500 3681700 243580 3837100 3568300 5370100 3004000 2980400 2840400 2880100 2908900 1 1 1 1 1 1 1 1 1 1 1 2466200 3946500 22799 3720500 3741500 5433300 2923800 2795700 2777100 2955700 3023400 2296500 3681700 243580 3837100 3568300 5370100 3004000 2980400 2840400 2880100 2908900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 368420000 368420000 0 5569 2876 5197 29956 35763 35763 2998 1 FKDIFQEIFDK Unmodified 1428.7289 0.7289171 1083 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 5.17 3.02 2 1 1 2 3 3 79.519 79.513 3 2.6487E-06 25575 20211116_3447_TMUAki_TMT10x_S_F8 120.6 90.164 103560000 166820000 1503600 137890000 86857000 128220000 124010000 63093000 75534000 83195000 111810000 96436000 155560000 9666400 142570000 84302000 129760000 122350000 68037000 80252000 80424000 106730000 7 7 5 7 7 7 7 7 7 7 7 51722000 80805000 1085700 64992000 41409000 66682000 51728000 31369000 36339000 39976000 55196000 48165000 75340000 5086500 67445000 40026000 67034000 51454000 33934000 38311000 38688000 52662000 3 3 2 3 3 3 3 3 3 3 3 51840000 86020000 417940 72894000 45448000 61540000 72283000 31723000 39195000 43219000 56612000 48271000 80216000 4579800 75121000 44276000 62723000 70893000 34103000 41941000 41736000 54072000 4 4 3 4 4 4 4 4 4 4 4 9214900000 4325200000 4889800000 5570 1083 5198 29957;29958;29959;29960;29961;29962 35764;35765;35766;35767;35768;35769;35770 35770 7 FKDIFQEIYDK Unmodified 1444.7238 0.72383172 364 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 0 0 0 1 By MS/MS By MS/MS 5.3 2.45 2 1 1 2 2 2 4 6 76.953 76.947 3 7.2006E-13 25146 20211116_3436_TMUAki_TMT10x_P_F8 179.59 150.96 77698000 134200000 858230 106540000 108780000 157510000 98278000 126780000 114830000 133740000 117710000 72350000 125120000 7648400 111400000 104090000 156630000 100750000 130660000 116200000 130330000 113470000 7 7 5 7 7 7 7 7 7 7 7 41918000 71403000 279040 54644000 55816000 105860000 50187000 68688000 57468000 73587000 61134000 39032000 66564000 3912800 57695000 53393000 103850000 51427000 71860000 58275000 71667000 58860000 3 3 2 3 3 3 3 3 3 3 3 35779000 62802000 579200 51894000 52961000 51655000 48090000 58090000 57364000 60154000 56580000 33318000 58560000 3735600 53707000 50693000 52782000 49322000 58799000 57924000 58665000 54605000 4 4 3 4 4 4 4 4 4 4 4 12861000000 6866900000 5994200000 5571 364 5199 29963;29964;29965;29966;29967;29968;29969;29970;29971;29972 35771;35772;35773;35774;35775;35776;35777;35778 35774 8 FKDLGEEHFK Unmodified 1248.6139 0.61388734 38 CON__P02769 yes yes 0 0 0 1 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 44.92 45.126 4 0.00040215 11421 20211116_3434_TMUAki_TMT10x_P_F6 101.89 62.228 + 7061000 9911100 206990 8147600 20780000 12656000 10309000 32962000 32088000 21156000 18711000 6576000 9241500 970440 8503900 19674000 13072000 11678000 32135000 31216000 21149000 18464000 5 5 4 5 5 5 5 5 5 5 5 2888600 4102600 144950 3230200 15286000 9538600 6558500 12976000 10669000 8093200 6996700 2690600 3824900 548210 3451300 14446000 9405400 7236100 12873000 10544000 8105400 6863200 2 2 2 2 2 2 2 2 2 2 2 4172400 5808500 62040 4917400 5493500 3117700 3750500 19986000 21419000 13063000 11714000 3885400 5416600 422230 5052600 5227300 3666100 4442300 19262000 20672000 13043000 11601000 3 3 2 3 3 3 3 3 3 3 3 2084400000 1116000000 968370000 5572 38 5200 29973;29974;29975;29976;29977 35779;35780;35781;35782;35783 35780 5 FKDPGLVDQLVK Unmodified 1357.7606 0.76055158 1107 P49591 SARS Serine--tRNA ligase, cytoplasmic yes yes 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 62.082 62.668 3 3.9421E-05 18755 20211116_3447_TMUAki_TMT10x_S_F8 87.498 44.414 29004000 51670000 235450 39210000 52216000 99899000 52595000 115130000 89850000 87815000 66095000 27007000 48167000 2932400 41788000 50090000 98369000 54483000 115470000 88934000 86890000 64495000 4 4 3 4 4 4 4 4 4 4 4 15546000 27899000 168350 19469000 35204000 73599000 33835000 67506000 53086000 50262000 37187000 14476000 26002000 1721100 21267000 33731000 71502000 34988000 68427000 52599000 49799000 36366000 2 2 2 2 2 2 2 2 2 2 2 13459000 23771000 67098 19740000 17012000 26300000 18760000 47628000 36764000 37553000 28908000 12532000 22166000 1211300 20521000 16359000 26867000 19495000 47047000 36334000 37091000 28129000 2 2 1 2 2 2 2 2 2 2 2 1562000000 739840000 822150000 5573 1107 5201 29978;29979;29980;29981 35784;35785;35786;35787;35788;35789 35789 6 FKDPNAPK Unmodified 915.48142 0.48141661 574 P09429;B2RPK0;P23497 HMGB1;HMGB1P1;SP100 High mobility group protein B1;Putative high mobility group protein B1-like 1;Nuclear autoantigen Sp-100 yes no 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 34.454 34.519 3 0.0098658 7226 20211116_3444_TMUAki_TMT10x_S_F5 73.721 40.312 1894000 3174600 29550 2849800 2822400 3224300 2393600 1887300 2067800 1889500 2539800 1763800 2961100 197570 2935800 2697200 3231600 2440300 1986400 2134600 1845300 2435500 2 2 2 2 2 2 2 2 2 2 2 1352700 2287100 18242 2020100 2195600 2690900 1721200 1346300 1499900 1382900 1804500 1259600 2133100 140950 2089700 2094400 2669700 1763800 1437800 1546400 1349100 1731300 1 1 1 1 1 1 1 1 1 1 1 541370 887580 11308 829730 626770 533440 672450 541050 567850 506590 735350 504160 827990 56618 846110 602810 561880 676470 548690 588210 496180 704180 1 1 1 1 1 1 1 1 1 1 1 123210000 83232000 39982000 5574 574 5202 29982;29983 35790;35791 35791 2 FKDPNCVGTVLASRPHTLDGR Unmodified 2339.1804 0.18044734 2447 Q96EP5;Q96EP5-2 DAZAP1 DAZ-associated protein 1 yes no 0 0 0 2 By MS/MS By MS/MS 2.69 1.77 3 4 4 1 1 6 7 46.002 45.896 4;5 4.8619E-16 12588 20211116_3440_TMUAki_TMT10x_S_F2 140.95 131.55 32410000 51935000 369640 60267000 51235000 59549000 35097000 46475000 44728000 41716000 45283000 30179000 48492000 2675400 60883000 48735000 60415000 36742000 47770000 45101000 40938000 43666000 16 16 10 16 16 16 16 16 16 16 16 19288000 30175000 258750 35465000 39676000 48176000 25746000 27404000 27196000 25284000 25770000 17961000 28177000 1633200 35996000 37708000 47828000 26888000 28848000 27553000 24781000 24904000 8 8 5 8 8 8 8 8 8 8 8 13122000 21759000 110900 24802000 11559000 11373000 9351400 19071000 17532000 16432000 19513000 12217000 20315000 1042200 24887000 11026000 12587000 9854300 18922000 17548000 16157000 18762000 8 8 5 8 8 8 8 8 8 8 8 19714000000 14623000000 5090600000 5575 2447 5203 29984;29985;29986;29987;29988;29989;29990;29991;29992;29993;29994;29995;29996 35792;35793;35794;35795;35796;35797;35798;35799;35800;35801;35802;35803;35804;35805;35806;35807 35804 16 FKEANNFLWPFK Unmodified 1539.7874 0.78743503 716 P18124 RPL7 60S ribosomal protein L7 yes yes 0 0 0 1 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 77.041 77.033 3 0.00020172 24594 20211116_3444_TMUAki_TMT10x_S_F5 89.43 76.663 28410000 54126000 0 33960000 44807000 54328000 48871000 27588000 22651000 31873000 40032000 26451000 50430000 2363800 36374000 43051000 53488000 48548000 29527000 24808000 30952000 38079000 3 3 0 3 3 3 3 3 3 3 3 15289000 28601000 0 18695000 24357000 36956000 31116000 15323000 12722000 17260000 20494000 14235000 26651000 1235300 20045000 23514000 36036000 30640000 16729000 14023000 16777000 19529000 2 2 0 2 2 2 2 2 2 2 2 13121000 25525000 0 15265000 20450000 17372000 17754000 12265000 9929500 14613000 19538000 12216000 23780000 1128500 16329000 19537000 17453000 17908000 12799000 10785000 14175000 18550000 1 1 0 1 1 1 1 1 1 1 1 3373800000 1029200000 2344600000 5576 716 5204 29997;29998;29999 35808;35809;35810 35810 3 FKEIAEAYDVLSDPR Unmodified 1751.873 0.87301516 804 P25685 DNAJB1 DnaJ homolog subfamily B member 1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.9 1.58 1 1 2 2 2 2 6 4 73.889 73.862 3 7.0742E-05 23579 20211116_3445_TMUAki_TMT10x_S_F6 90.714 65.124 55464000 94660000 566180 84621000 59218000 90796000 65603000 54964000 55789000 59335000 69554000 51645000 88290000 4964800 87129000 56962000 91311000 65906000 57823000 57673000 57770000 66670000 15 15 12 15 15 15 15 15 15 15 15 41689000 68781000 394700 61290000 42246000 74898000 48181000 41484000 41535000 43914000 50671000 38817000 64152000 3618100 63258000 40666000 74711000 48356000 43937000 42870000 42788000 48598000 11 11 8 11 11 11 11 11 11 11 11 13775000 25878000 171480 23331000 16973000 15898000 17422000 13479000 14254000 15422000 18883000 12827000 24138000 1346700 23871000 16296000 16600000 17550000 13885000 14804000 14982000 18072000 4 4 4 4 4 4 4 4 4 4 4 5108400000 4159600000 948800000 5577 804 5205 30000;30001;30002;30003;30004;30005;30006;30007;30008;30009 35811;35812;35813;35814;35815;35816;35817;35818;35819;35820;35821;35822;35823;35824;35825;35826;35827 35825 17 FKEIQNLIK Unmodified 1131.6652 0.66519463 2424 Q96CN7 ISOC1 Isochorismatase domain-containing protein 1 yes yes 0 0 0 1 By MS/MS 2 0 1 1 60.151 59.888 3 0.00015616 19629 20211116_3429_TMUAki_TMT10x_P_F2 91.855 47.667 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5578 2424 5206 30010 35828 35828 1 FKEISFAYEVLSNPEKR Unmodified 2056.0629 0.062941193 298 O60884 DNAJA2 DnaJ homolog subfamily A member 2 yes yes 0 0 0 2 By matching By MS/MS 2 0 2 1 1 72.024 71.843 4 5.914E-29 23202 20211116_3440_TMUAki_TMT10x_S_F2 181.88 153.67 3509300 6472700 0 4528800 4052700 4114800 4440500 3568300 3573100 4014800 4472700 3267500 6032400 298520 4751300 3895600 4205100 4457000 3669000 3704900 3902700 4286800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3509300 6472700 0 4528800 4052700 4114800 4440500 3568300 3573100 4014800 4472700 3267500 6032400 298520 4751300 3895600 4205100 4457000 3669000 3704900 3902700 4286800 1 1 0 1 1 1 1 1 1 1 1 973810000 625530000 348290000 5579 298 5207 30011;30012 35829 35829 1 FKEPLPEYVR Unmodified 1276.6816 0.68157298 3176 Q9ULX3 NOB1 RNA-binding protein NOB1 yes yes 0 0 0 1 By MS/MS 6 0 1 1 48.829 48.925 3 0.032327 13014 20211116_3434_TMUAki_TMT10x_P_F6 59.038 31.557 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5580 3176 5208 30013 35830 35830 1 FKEQLTPSQIMSLEK Unmodified 1777.9284 0.92842155 1464 Q00059;Q00059-2 TFAM Transcription factor A, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 64.084 64.058 3 1.6518E-14 19844 20211116_3436_TMUAki_TMT10x_P_F8 135.47 117.1 9607700 16554000 31569 16671000 8811600 8152700 9544600 5276900 4635800 5852200 10438000 8945900 15447000 814820 16871000 8469400 8766300 9491200 5527600 5136900 5691900 9890000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9607700 16554000 31569 16671000 8811600 8152700 9544600 5276900 4635800 5852200 10438000 8945900 15447000 814820 16871000 8469400 8766300 9491200 5527600 5136900 5691900 9890000 2 2 2 2 2 2 2 2 2 2 2 643260000 0 643260000 5581 1464 5209 30014;30015 35831;35832;35833 35831 3 FKEQLTPSQIMSLEK Oxidation (M) 1793.9233 0.92333617 1464 Q00059;Q00059-2 TFAM Transcription factor A, mitochondrial yes no 0 0 1 1 By MS/MS 7 0 1 1 56.489 57.014 3 0.002103 18678 20211116_3446_TMUAki_TMT10x_S_F7 66.246 44.091 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5582 1464 5209 30016 35834 35834 1965 1 FKESFAEMNR Oxidation (M) 1273.5761 0.57612163 650 P13073 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes yes 0 0 1 1 By MS/MS 6.5 0.5 1 1 2 35.972 36.183 3 0.057835 7939 20211116_3434_TMUAki_TMT10x_P_F6 45.829 22.776 244980 373500 0 439300 572470 387560 257050 179740 196200 167890 288780 228090 348760 24088 442730 540930 393340 275340 192880 205550 164460 275710 1 1 0 1 1 1 1 1 1 1 1 244980 373500 0 439300 572470 387560 257050 179740 196200 167890 288780 228090 348760 24088 442730 540930 393340 275340 192880 205550 164460 275710 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17666000 17666000 0 5583 650 5210 30017;30018 35835 35835 703 1 FKEVGEAFTILSDPK Unmodified 1679.877 0.8770379 2590 Q99615;Q99615-2 DNAJC7 DnaJ homolog subfamily C member 7 yes no 0 0 0 1 By MS/MS By matching 7 0 2 1 1 74.282 74.458 3 0.0013123 25541 20211116_3435_TMUAki_TMT10x_P_F7 66.335 54.896 3491400 5455600 27905 4975500 3599100 7749300 4135500 4935300 4442000 4194100 4444400 3251100 5088800 316980 5151200 3466100 7660100 4176300 5137700 4505600 4126700 4287200 1 1 1 1 1 1 1 1 1 1 1 3491400 5455600 27905 4975500 3599100 7749300 4135500 4935300 4442000 4194100 4444400 3251100 5088800 316980 5151200 3466100 7660100 4176300 5137700 4505600 4126700 4287200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1487100000 761140000 725950000 5584 2590 5211 30019;30020 35836 35836 1 FKGDETVVIGQGKPYVFDR Unmodified 2154.111 0.11095402 262 O60282 KIF5C Kinesin heavy chain isoform 5C yes yes 0 0 0 2 By MS/MS 8 0 1 1 57.47 57.634 4 7.3139E-05 17213 20211116_3436_TMUAki_TMT10x_P_F8 79.467 65.635 12428000 20701000 215970 20519000 15298000 25132000 15520000 14894000 14255000 14188000 16442000 11573000 19316000 1227000 21014000 14685000 25088000 15692000 15639000 14635000 13886000 15793000 2 2 1 2 2 2 2 2 2 2 2 12428000 20701000 215970 20519000 15298000 25132000 15520000 14894000 14255000 14188000 16442000 11573000 19316000 1227000 21014000 14685000 25088000 15692000 15639000 14635000 13886000 15793000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1756200000 1756200000 0 5585 262 5212 30021 35837;35838 35837 2 FKGPEFVR Unmodified 978.5287 0.52870115 2715 Q9BXP5;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3 SRRT Serrate RNA effector molecule homolog yes no 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 41.517 41.436 3 0.00080806 10031 20211116_3447_TMUAki_TMT10x_S_F8 108.57 74.384 7126500 10746000 62984 10935000 13274000 12926000 8533900 12884000 12878000 10683000 12075000 6635800 10028000 724260 11172000 12612000 13045000 9038700 13036000 12883000 10525000 11674000 5 5 4 5 5 5 5 5 5 5 5 3284600 4636400 43877 4805300 9184000 8918200 4378900 5936900 6005000 5034600 5643800 3058700 4326900 395840 4951800 8687900 8764600 4743300 6159600 6025100 4954300 5455600 2 2 2 2 2 2 2 2 2 2 2 3841800 6109500 19107 6129500 4090400 4008000 4155000 6947400 6873200 5648800 6431600 3577200 5700900 328420 6219900 3924100 4280000 4295400 6876400 6857600 5570400 6218000 3 3 2 3 3 3 3 3 3 3 3 263120000 192300000 70820000 5586 2715 5213 30022;30023;30024;30025 35839;35840;35841;35842;35843;35844;35845 35845 7 FKGPFTDVVTTNLK Unmodified 1565.8453 0.84534384 3050 Q9P0L0;Q9P0L0-2 VAPA Vesicle-associated membrane protein-associated protein A yes no 0 0 0 1 By MS/MS By MS/MS 2.38 0.696 1 3 4 5 3 64.624 64.294 3;4 6.81E-19 21853 20211116_3430_TMUAki_TMT10x_P_F3 164.66 136.36 63642000 112000000 473010 97268000 85679000 104420000 75748000 99323000 95394000 90504000 93204000 59260000 104460000 5945200 100380000 81926000 105820000 77962000 100980000 96110000 88754000 89978000 12 12 9 12 12 12 12 12 12 12 12 21850000 37599000 162850 32864000 31887000 55785000 32184000 34349000 33579000 31587000 31614000 20346000 35066000 2089000 34204000 30591000 54935000 32673000 35923000 34030000 30964000 30558000 5 5 4 5 5 5 5 5 5 5 5 41791000 74404000 310160 64404000 53792000 48638000 43564000 64974000 61815000 58917000 61590000 38914000 69390000 3856200 66173000 51335000 50889000 45288000 65055000 62080000 57791000 59420000 7 7 5 7 7 7 7 7 7 7 7 7383000000 4269300000 3113700000 5587 3050 5214 30026;30027;30028;30029;30030;30031;30032;30033 35846;35847;35848;35849;35850;35851;35852;35853;35854;35855;35856;35857;35858 35849 13 FKGQILMPNIGYGSNK Unmodified 1765.9185 0.91852556 1382 P62910 RPL32 60S ribosomal protein L32 yes yes 0 0 0 1 By MS/MS 5 0 1 1 61.996 62.154 3 2.5733E-06 19602 20211116_3433_TMUAki_TMT10x_P_F5 92.575 80.193 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5588 1382 5215 30034 35859 35859 1 FKGQILMPNIGYGSNKK Oxidation (M) 1910.0084 0.0084032019 1382 P62910 RPL32 60S ribosomal protein L32 yes yes 0 0 1 2 By MS/MS By MS/MS 5.2 0.748 1 2 2 2 3 49.742 49.894 4 1.1146E-05 14449 20211116_3433_TMUAki_TMT10x_P_F5 94.922 78.237 52093000 92660000 767790 94391000 90078000 100260000 56263000 105670000 108250000 84964000 83854000 48510000 86468000 5557000 96260000 85567000 101890000 60447000 106540000 106980000 83833000 81646000 11 11 9 11 11 11 11 11 11 11 11 24693000 42628000 313090 43548000 66945000 79083000 39584000 49995000 52098000 40429000 38794000 22994000 39779000 2930800 44893000 63521000 77719000 41970000 52013000 51981000 39879000 37835000 5 5 5 5 5 5 5 5 5 5 5 27401000 50032000 454700 50843000 23133000 21172000 16679000 55674000 56148000 44535000 45060000 25516000 46689000 2626200 51367000 22046000 24174000 18477000 54531000 55000000 43955000 43811000 6 6 4 6 6 6 6 6 6 6 6 6332200000 3263400000 3068800000 5589 1382 5216 30035;30036;30037;30038;30039 35860;35861;35862;35863;35864;35865;35866;35867;35868;35869;35870 35860 1854 11 FKGQILMPNIGYGSNKK Unmodified 1894.0135 0.01348858 1382 P62910 RPL32 60S ribosomal protein L32 yes yes 0 0 0 2 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 55.547 55.899 4 1.5588E-10 18160 20211116_3446_TMUAki_TMT10x_S_F7 123.36 112.73 78719000 129900000 973070 150170000 107760000 83736000 79913000 47015000 35366000 49047000 81390000 73302000 121280000 7771000 150770000 102680000 88578000 81137000 49716000 39561000 47818000 77089000 7 7 5 7 7 7 7 7 7 7 7 33859000 54512000 237960 66004000 68370000 58230000 50146000 22045000 16507000 21184000 34182000 31528000 50909000 3467100 66407000 65110000 58987000 50777000 24215000 18892000 20725000 32427000 3 3 2 3 3 3 3 3 3 3 3 44860000 75385000 735110 84168000 39394000 25507000 29767000 24970000 18859000 27863000 47208000 41774000 70375000 4303900 84367000 37573000 29591000 30359000 25501000 20669000 27093000 44662000 4 4 3 4 4 4 4 4 4 4 4 6812900000 3392700000 3420200000 5590 1382 5216 30040;30041;30042;30043 35871;35872;35873;35874;35875;35876;35877 35877 7 FKIGDQEFDHLPALLEFYK Unmodified 2309.1732 0.17321992 1046 P46109 CRKL Crk-like protein yes yes 0 0 0 1 By matching By MS/MS 7 0.707 1 2 1 2 2 78.554 78.566 4 3.328E-08 25196 20211116_3447_TMUAki_TMT10x_S_F8 106.67 91.738 12074000 19821000 178700 16042000 16625000 14419000 15792000 12108000 11861000 12944000 14112000 11244000 18481000 1231300 16608000 15931000 14737000 15940000 12452000 12319000 12607000 13544000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12074000 19821000 178700 16042000 16625000 14419000 15792000 12108000 11861000 12944000 14112000 11244000 18481000 1231300 16608000 15931000 14737000 15940000 12452000 12319000 12607000 13544000 1 1 1 1 1 1 1 1 1 1 1 2661400000 996050000 1665400000 5591 1046 5217 30044;30045;30046;30047 35878 35878 1 FKIPGSPPESMGR Oxidation (M) 1417.7024 0.70238478 1133 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 1 1 By MS/MS By MS/MS 4.14 3.09 2 2 1 2 4 3 42.124 42.166 3 0.00022483 10769 20211116_3436_TMUAki_TMT10x_P_F8 86.214 61.715 9310500 14993000 131360 17385000 19821000 19602000 11652000 16794000 18044000 13371000 15648000 8669900 13999000 1039500 17600000 18808000 19770000 12445000 17115000 17992000 13200000 15169000 8 8 6 8 8 8 8 8 8 8 8 5760600 9064300 88441 10521000 16903000 16751000 9155300 10088000 10599000 8094500 9598700 5364400 8463400 715520 10723000 16018000 16530000 9736500 10533000 10684000 7987600 9290400 4 4 3 4 4 4 4 4 4 4 4 3549800 5928600 42922 6864200 2918000 2851700 2497100 6706200 7444800 5276700 6049500 3305600 5535500 323980 6876600 2789800 3239300 2708100 6581100 7307800 5212400 5878900 4 4 3 4 4 4 4 4 4 4 4 7704500000 5434200000 2270300000 5592 1133 5218 30048;30049;30050;30051;30052;30053;30054 35879;35880;35881;35882;35883;35884;35885;35886 35882 1491 8 FKIPGSPPESMGR Unmodified 1401.7075 0.70747015 1133 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 1 By MS/MS By MS/MS 3.88 3.22 3 2 3 4 4 48 47.844 3 1.5972E-12 13272 20211116_3436_TMUAki_TMT10x_P_F8 130.03 101.31 35942000 60857000 355130 72198000 51691000 38542000 36819000 23581000 19656000 24643000 44189000 33467000 56829000 3426400 72350000 49204000 41003000 37594000 24762000 21618000 24024000 41868000 8 8 5 8 8 8 8 8 8 8 8 13381000 22519000 78246 26705000 32957000 25185000 22050000 8509900 7131300 9082000 16111000 12459000 21028000 1384600 26925000 31326000 25375000 22475000 9510900 8226300 8846400 15264000 3 3 2 3 3 3 3 3 3 3 3 22561000 38339000 276890 45493000 18734000 13357000 14769000 15071000 12525000 15561000 28078000 21008000 35801000 2041700 45424000 17878000 15628000 15119000 15251000 13392000 15177000 26604000 5 5 3 5 5 5 5 5 5 5 5 4413200000 2453100000 1960200000 5593 1133 5218 30055;30056;30057;30058;30059;30060;30061;30062 35887;35888;35889;35890;35891;35892;35893;35894;35895;35896 35891 10 FKKPEGSWDCELCLVQNK Unmodified 2237.0609 0.060909057 1121 P49790;P49790-2;P49790-3 NUP153 Nuclear pore complex protein Nup153 yes no 0 0 0 2 By MS/MS By MS/MS 8 0 2 1 1 59.392 59.476 4 0.018237 17501 20211116_3447_TMUAki_TMT10x_S_F8 49.993 35.978 7308000 13703000 0 13020000 8782700 11160000 9000600 7610000 6665100 8030800 9885600 6804100 12784000 576060 13303000 8423500 11404000 9046000 7929000 6997100 7825900 9436600 2 2 0 2 2 2 2 2 2 2 2 3407600 6714500 0 6514600 4681100 7278400 5119700 3871900 2875500 3872400 4866700 3172600 6264600 278870 6671500 4498100 7291100 5100800 4108600 3094200 3781900 4633100 1 1 0 1 1 1 1 1 1 1 1 3900400 6988800 0 6505700 4101600 3881200 3880900 3738100 3789600 4158400 5018900 3631400 6519500 297200 6631800 3925300 4112600 3945300 3820400 3902900 4044000 4803500 1 1 0 1 1 1 1 1 1 1 1 1412700000 914320000 498350000 5594 1121 5219 30063;30064 35897 35897 1 FKLITEDVQGK Unmodified 1276.7027 0.70270235 1305 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 0 1 By MS/MS By MS/MS 7.25 0.829 1 1 2 2 2 55.115 55.287 3 5.8106E-12 16307 20211116_3436_TMUAki_TMT10x_P_F8 139.89 106 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5595 1305 5220 30065;30066;30067;30068 35898;35899;35900;35901 35899 4 FKLVFLGEQSVGK Unmodified 1450.8184 0.81840081 742;743 P20340;Q9NRW1;P20340-3;P20340-2 RAB6A;RAB6B Ras-related protein Rab-6A;Ras-related protein Rab-6B no no 0 0 0 1 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 70.224 70.027 3 2.8427E-10 25444 20211116_3441_TMUAki_TMT10x_S_F3 140.1 116.5 29360000 54412000 647850 45234000 54600000 72254000 46824000 51978000 42647000 43975000 45523000 27342000 50738000 3391400 47198000 52196000 71485000 47773000 53631000 43671000 43278000 43826000 4 4 4 4 4 4 4 4 4 4 4 22295000 40688000 336300 34601000 43135000 63787000 38543000 39119000 32371000 33197000 34667000 20761000 37943000 2453700 36165000 41265000 62628000 39145000 40842000 33283000 32666000 33371000 2 2 2 2 2 2 2 2 2 2 2 7064900 13725000 311550 10633000 11465000 8466300 8280900 12858000 10277000 10778000 10856000 6580400 12795000 937700 11033000 10932000 8857200 8627900 12790000 10388000 10612000 10455000 2 2 2 2 2 2 2 2 2 2 2 2564100000 1905200000 658940000 5596 742;743 5221 30069;30070;30071 35902;35903;35904;35905 35905 4 FKNEEEVFAWNNEVK Unmodified 1881.8897 0.88972785 1098 P49419-2;P49419;P49419-4 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 0 0 0 1 By MS/MS By MS/MS 6 0.707 1 2 1 2 2 61.999 62.243 3 1.9855E-09 18876 20211116_3445_TMUAki_TMT10x_S_F6 123.29 107.17 21616000 35498000 23199 38286000 27517000 27963000 29019000 12465000 10857000 14783000 24255000 20125000 33133000 1613800 38707000 26405000 28775000 28794000 13525000 12315000 14343000 22983000 5 5 1 5 5 5 5 5 5 5 5 11449000 18212000 23199 19310000 16554000 20368000 18208000 7105900 6121100 7939400 12685000 10659000 16998000 860000 19638000 15904000 20386000 18008000 7919000 6989000 7719700 12034000 3 3 1 3 3 3 3 3 3 3 3 10167000 17285000 0 18976000 10962000 7594800 10811000 5358700 4736000 6843800 11570000 9465400 16135000 753800 19069000 10501000 8388900 10786000 5605600 5326400 6622900 10949000 2 2 0 2 2 2 2 2 2 2 2 2024700000 1074700000 950040000 5597 1098 5222 30072;30073;30074;30075 35906;35907;35908;35909;35910;35911 35910 6 FKNELER Unmodified 934.48723 0.48723027 993 P41091;Q2VIR3;Q2VIR3-2 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 34.514 34.579 3 0.034979 7265 20211116_3444_TMUAki_TMT10x_S_F5 62.104 29.374 2548600 3977000 15950 4110700 3995700 3660400 2984300 2531200 2517000 2313100 3243600 2373100 3711500 245050 4177400 3806700 3731400 3065500 2624000 2606800 2268100 3106500 3 3 2 3 3 3 3 3 3 3 3 1337900 2022700 11848 2076000 2576300 2649600 1613700 1319900 1328400 1192000 1608400 1245800 1887600 139310 2122700 2446800 2634000 1678400 1405300 1373900 1169500 1542900 1 1 1 1 1 1 1 1 1 1 1 1210700 1954400 4101.3 2034600 1419400 1010800 1370500 1211300 1188600 1121100 1635200 1127300 1823900 105750 2054700 1359900 1097400 1387100 1218800 1233000 1098700 1563600 2 2 1 2 2 2 2 2 2 2 2 52669000 29192000 23478000 5598 993 5223 30076;30077 35912;35913;35914 35914 3 FKQISQAYEVLSDAK Unmodified 1725.8938 0.8937506 889 P31689;P31689-2 DNAJA1 DnaJ homolog subfamily A member 1 yes no 0 0 0 1 By MS/MS By matching 8 0 2 1 1 68.507 68.491 3 0.00049454 21728 20211116_3436_TMUAki_TMT10x_P_F8 77.562 58.238 3872800 6952600 0 4743800 4775900 9117600 5212000 5983800 6416300 5802100 5783900 3605800 6479300 309640 5060900 4588800 8948200 5301200 6236600 6452400 5674100 5599100 1 1 0 1 1 1 1 1 1 1 1 3872800 6952600 0 4743800 4775900 9117600 5212000 5983800 6416300 5802100 5783900 3605800 6479300 309640 5060900 4588800 8948200 5301200 6236600 6452400 5674100 5599100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1671600000 942640000 728980000 5599 889 5224 30078;30079 35915 35915 1 FKSDQNLQTALELTR Unmodified 1762.9214 0.92136233 425 O95373 IPO7 Importin-7 yes yes 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 58.214 58.51 3 8.6789E-15 17038 20211116_3447_TMUAki_TMT10x_S_F8 157.11 138.54 42347000 70024000 247000 64918000 50583000 70769000 48081000 43991000 33680000 40804000 53847000 39430000 65320000 3705100 66675000 48443000 71132000 48456000 45983000 35610000 39983000 51320000 4 4 2 4 4 4 4 4 4 4 4 31609000 50940000 132830 48114000 41283000 62095000 39025000 32442000 25242000 29494000 40766000 29431000 47522000 2728600 49493000 39525000 61730000 39276000 34393000 26833000 28927000 38845000 3 3 1 3 3 3 3 3 3 3 3 10738000 19083000 114170 16804000 9300200 8673300 9056300 11548000 8438400 11310000 13081000 9999000 17798000 976520 17183000 8918200 9401900 9179800 11589000 8776400 11056000 12475000 1 1 1 1 1 1 1 1 1 1 1 2849300000 2013900000 835450000 5600 425 5225 30080;30081;30082 35916;35917;35918;35919 35919 4 FKSDQNLQTALELTRR Unmodified 1919.0225 0.022473362 425 O95373 IPO7 Importin-7 yes yes 0 0 0 2 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 52.444 52.181 4 3.1564E-52 16455 20211116_3429_TMUAki_TMT10x_P_F2 258.34 230.81 5903900 9873200 211630 11015000 8549500 8154400 5889900 8588400 6703100 6763400 8391900 5498400 9217000 684130 11114000 8141000 8493300 6138600 8655600 6843600 6680700 8043100 3 3 2 3 3 3 3 3 3 3 3 2285100 3503000 0 3814900 4243900 5231600 2986200 2843800 2214500 2201800 3093300 2127300 3269800 177260 3891000 4035100 5188500 3070900 2992700 2317800 2176800 2956800 1 1 0 1 1 1 1 1 1 1 1 3618800 6370200 211630 7199900 4305600 2922800 2903700 5744600 4488600 4561700 5298600 3371100 5947200 506880 7222600 4105900 3304800 3067700 5662900 4525700 4503900 5086300 2 2 2 2 2 2 2 2 2 2 2 1526800000 733640000 793130000 5601 425 5226 30083;30084;30085 35920;35921;35922 35920 3 FKTPEDAQAVINAYTEINKK Unmodified 2279.1798 0.17976186 1893 Q4G0J3;Q4G0J3-3;Q4G0J3-2 LARP7 La-related protein 7 yes no 0 0 0 2 By MS/MS 1.5 0.5 1 1 2 68.939 68.789 4 7.4672E-18 21634 20211116_3428_TMUAki_TMT10x_P_F1 144.92 134.8 8929100 15130000 108190 13839000 10061000 19756000 12438000 13231000 11776000 13121000 12971000 8314700 14113000 855310 14298000 9713300 19614000 12471000 13778000 12051000 12819000 12476000 2 2 1 2 2 2 2 2 2 2 2 8929100 15130000 108190 13839000 10061000 19756000 12438000 13231000 11776000 13121000 12971000 8314700 14113000 855310 14298000 9713300 19614000 12471000 13778000 12051000 12819000 12476000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2371900000 2371900000 0 5602 1893 5227 30086;30087 35923;35924 35923 2 FKTPEEAALFK Unmodified 1279.6812 0.68123863 1122 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 56.376 57.109 3 0.00023938 18169 20211116_3435_TMUAki_TMT10x_P_F7 90.731 64.133 5763700 9711700 64901 9575000 10822000 15164000 8470000 8388700 8592400 7992200 8376000 5367100 9061600 609180 9861300 10321000 14951000 8718300 8859100 8728300 7822000 8086800 1 1 1 1 1 1 1 1 1 1 1 5763700 9711700 64901 9575000 10822000 15164000 8470000 8388700 8592400 7992200 8376000 5367100 9061600 609180 9861300 10321000 14951000 8718300 8859100 8728300 7822000 8086800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 633810000 633810000 0 5603 1122 5228 30088;30089 35925;35926 35925 2 FKVESEQQYFEIEK Unmodified 1802.8727 0.87268081 641 P12270;P12270-2 TPR Nucleoprotein TPR yes no 0 0 0 1 By MS/MS By MS/MS 5 0.707 1 2 1 3 1 60.372 60.462 3 3.7474E-10 18911 20211116_3433_TMUAki_TMT10x_P_F5 121.79 88.163 30391000 49608000 309230 50284000 35957000 49469000 35910000 31671000 34479000 35174000 38230000 28299000 46292000 2880500 51238000 34495000 50046000 36384000 33204000 35272000 34209000 36763000 7 7 6 7 7 7 7 7 7 7 7 17865000 28586000 229640 29325000 22848000 37418000 22578000 18690000 20205000 20229000 22188000 16636000 26677000 1764900 29985000 21915000 37199000 22843000 19993000 20729000 19694000 21343000 4 4 4 4 4 4 4 4 4 4 4 12526000 21022000 79585 20959000 13109000 12052000 13332000 12982000 14274000 14945000 16041000 11664000 19615000 1115600 21253000 12580000 12848000 13541000 13211000 14543000 14515000 15420000 3 3 2 3 3 3 3 3 3 3 3 2264000000 1655000000 608990000 5604 641 5229 30090;30091;30092;30093 35927;35928;35929;35930;35931;35932;35933;35934 35929 8 FKVPSEPSALVPESAPRPR Unmodified 2063.1164 0.11637375 158 O15069 NACAD NAC-alpha domain-containing protein 1 yes yes 0 0 0 2 By matching By MS/MS 1.33 0.471 2 1 1 2 49.873 49.743 4 4.782E-12 15963 20211116_3439_TMUAki_TMT10x_S_F1 128.72 111.65 5058500 9008100 31308 10281000 5054700 4088800 4310200 14326000 16737000 14290000 11222000 4709700 8410300 390240 10306000 4826100 4777400 4795600 14048000 16288000 13958000 10996000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5058500 9008100 31308 10281000 5054700 4088800 4310200 14326000 16737000 14290000 11222000 4709700 8410300 390240 10306000 4826100 4777400 4795600 14048000 16288000 13958000 10996000 2 2 1 2 2 2 2 2 2 2 2 934170000 355330000 578850000 5605 158 5230 30094;30095;30096 35935;35936 35935 2 FLAAGTHLGGTNLDFQMEQYIYK Oxidation (M) 2632.2632 0.26317392 565 P08865 RPSA 40S ribosomal protein SA yes yes 0 0 1 0 By MS/MS By MS/MS 5.18 3.19 4 3 4 6 5 71.722 71.77 3;4 1.5793E-36 23019 20211116_3436_TMUAki_TMT10x_P_F8 187.31 177.39 82290000 144460000 541250 139130000 92199000 130650000 99881000 87491000 91153000 97079000 107020000 76621000 134780000 7079600 142180000 88606000 132650000 100640000 91419000 93678000 94418000 102750000 19 19 10 19 19 19 19 19 19 19 19 41599000 71602000 200160 65650000 43969000 86765000 49367000 47473000 50281000 51901000 53245000 38733000 66790000 3420400 67710000 42292000 86205000 49821000 50383000 51218000 50507000 51272000 10 10 4 10 10 10 10 10 10 10 10 40690000 72862000 341090 73479000 48230000 43881000 50513000 40017000 40872000 45178000 53776000 37888000 67990000 3659200 74474000 46314000 46442000 50820000 41036000 42460000 43911000 51477000 9 9 6 9 9 9 9 9 9 9 9 21574000000 13151000000 8422400000 5606 565 5231 30097;30098;30099;30100;30101;30102;30103;30104;30105;30106;30107 35937;35938;35939;35940;35941;35942;35943;35944;35945;35946;35947;35948;35949;35950;35951;35952;35953;35954;35955 35946 533 19 FLAAGTHLGGTNLDFQMEQYIYKR Oxidation (M) 2788.3643 0.36428495 565 P08865 RPSA 40S ribosomal protein SA yes yes 0 0 1 1 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 63.75 63.572 4 5.0505E-24 19819 20211116_3440_TMUAki_TMT10x_S_F2 160.13 151.07 11372000 21293000 79864 14768000 13759000 30589000 16147000 23185000 24373000 23418000 19430000 10589000 19844000 746940 15763000 13255000 30019000 16508000 23953000 24260000 22861000 18896000 4 4 2 4 4 4 4 4 4 4 4 8469800 15949000 5379 10854000 9219900 25857000 12394000 17614000 18481000 17338000 14769000 7886000 14863000 413980 11657000 8918400 25231000 12594000 18317000 18403000 16944000 14362000 3 3 1 3 3 3 3 3 3 3 3 2902200 5343900 74485 3914400 4538800 4731700 3753100 5570400 5891600 6080100 4660500 2702800 4981100 332950 4106500 4336800 4788800 3914200 5636500 5856400 5917100 4533900 1 1 1 1 1 1 1 1 1 1 1 9811600000 5414200000 4397400000 5607 565 5232 30108;30109;30110 35956;35957;35958;35959 35959 533 4 FLAAGTHLGGTNLDFQMEQYIYKR Unmodified 2772.3694 0.36937032 565 P08865 RPSA 40S ribosomal protein SA yes yes 0 0 0 1 By MS/MS 3.5 0.5 1 1 2 73.421 73.221 4 3.4496E-48 26610 20211116_3441_TMUAki_TMT10x_S_F3 205.96 182.63 6614800 11140000 42783 9484400 9809400 6588600 8860000 5190900 4156000 5841900 7537300 6158900 10389000 578300 9749300 9380900 6859300 8891100 5367700 4553900 5678700 7166300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6614800 11140000 42783 9484400 9809400 6588600 8860000 5190900 4156000 5841900 7537300 6158900 10389000 578300 9749300 9380900 6859300 8891100 5367700 4553900 5678700 7166300 2 2 1 2 2 2 2 2 2 2 2 595630000 0 595630000 5608 565 5232 30111;30112 35960;35961 35961 2 FLAEEGFYK Unmodified 1102.5335 0.53351176 1061 P46977 STT3A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 4 2 65.237 65.182 2 1.3806E-06 19740 20211116_3444_TMUAki_TMT10x_S_F5 170.22 128.77 32028000 52389000 189610 53182000 43148000 59900000 39126000 44089000 38905000 41427000 44366000 29822000 48888000 2935600 54299000 41279000 60253000 39891000 45545000 39782000 40570000 42629000 7 7 4 7 7 7 7 7 7 7 7 23370000 37393000 108070 37943000 32695000 50620000 29911000 31747000 28545000 29989000 31457000 21761000 34894000 2118500 38858000 31283000 50362000 30443000 33178000 29203000 29361000 30255000 5 5 3 5 5 5 5 5 5 5 5 8657600 14996000 81534 15240000 10453000 9280600 9214800 12342000 10360000 11438000 12909000 8061700 13994000 817140 15441000 9996100 9890800 9447200 12367000 10580000 11208000 12374000 2 2 1 2 2 2 2 2 2 2 2 1406400000 1009800000 396580000 5609 1061 5233 30113;30114;30115;30116;30117;30118 35962;35963;35964;35965;35966;35967;35968;35969;35970 35970 9 FLALEGNPLR Unmodified 1128.6291 0.62914348 2839 Q9H9A6 LRRC40 Leucine-rich repeat-containing protein 40 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 65.406 65.655 2 1.167E-05 20524 20211116_3436_TMUAki_TMT10x_P_F8 139.74 107.38 23299000 37891000 55007 39356000 29790000 38152000 27650000 23746000 21306000 22902000 28781000 21693000 35362000 1946100 40029000 28505000 38617000 27962000 24845000 22218000 22402000 27532000 3 3 2 3 3 3 3 3 3 3 3 15033000 24152000 43491 25425000 20566000 29619000 19646000 14594000 13315000 14690000 18521000 13996000 22542000 1236700 25910000 19691000 29577000 19780000 15599000 14007000 14343000 17706000 2 2 1 2 2 2 2 2 2 2 2 8265600 13738000 11515 13932000 9223900 8532900 8003900 9152300 7991300 8212000 10259000 7696200 12820000 709430 14118000 8814400 9039700 8182100 9246000 8210800 8059000 9826300 1 1 1 1 1 1 1 1 1 1 1 1808200000 1228800000 579400000 5610 2839 5234 30119;30120;30121;30122 35971;35972;35973;35974 35972 4 FLAVGLVDNTVR Unmodified 1302.7296 0.7295858 1798 Q15393 SF3B3 Splicing factor 3B subunit 3 yes yes 0 0 0 0 By MS/MS By MS/MS 3.86 2.8 4 4 2 2 2 4 10 70.064 70.179 2;3 3.7108E-28 24279 20211116_3439_TMUAki_TMT10x_S_F1 232.79 184.88 20470000 34895000 34452 30864000 22895000 25403000 22535000 26022000 24677000 25208000 25877000 19060000 32546000 1742600 31689000 21944000 26229000 22943000 26401000 25054000 24653000 24925000 4 4 2 4 4 4 4 4 4 4 4 4626800 7462800 0 6695500 4424600 8850900 5208500 5351000 5353400 5686000 5643200 4307900 6960700 371110 6917000 4261600 8805100 5246700 5627200 5450100 5539500 5434800 1 1 0 1 1 1 1 1 1 1 1 15844000 27432000 34452 24168000 18470000 16552000 17327000 20671000 19324000 19522000 20233000 14752000 25585000 1371500 24772000 17683000 17424000 17697000 20774000 19604000 19113000 19490000 3 3 2 3 3 3 3 3 3 3 3 4741000000 1299900000 3441100000 5611 1798 5235 30123;30124;30125;30126;30127;30128;30129;30130;30131;30132;30133;30134;30135;30136 35975;35976;35977;35978;35979;35980;35981;35982;35983;35984;35985;35986;35987;35988 35979 14 FLCADYAEQDELDYHR Unmodified 2043.8633 0.86325511 3160 Q9UKV3;Q9UKV3-5;Q9UKV3-2;Q9UKV3-3 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 0 0 0 0 By MS/MS By MS/MS 2.33 1.11 2 1 2 1 3 3 57.267 57.061 3 5.4419E-29 19993 20211116_3441_TMUAki_TMT10x_S_F3 183 171.94 21375000 37157000 179600 37343000 32434000 46462000 29540000 36300000 32650000 30965000 33446000 19902000 34672000 1907100 38219000 31025000 46542000 30211000 37261000 33108000 30462000 32239000 10 10 6 10 10 10 10 10 10 10 10 15410000 26285000 128360 25545000 25447000 40424000 23992000 27022000 23921000 22578000 24798000 14348000 24524000 1421700 26334000 24364000 39963000 24410000 28017000 24370000 22234000 23895000 7 7 5 7 7 7 7 7 7 7 7 5965100 10872000 51246 11798000 6986600 6038200 5547600 9278400 8728700 8387600 8647800 5554000 10148000 485400 11885000 6661300 6579400 5800900 9243500 8737900 8228400 8344700 3 3 1 3 3 3 3 3 3 3 3 4378300000 2465600000 1912700000 5612 3160 5236 30137;30138;30139;30140;30141;30142 35989;35990;35991;35992;35993;35994;35995;35996;35997;35998 35997 10 FLCFGSEGGTYYIK Unmodified 1640.7545 0.75447993 602 P10155;P10155-5;P10155-3;P10155-4;P10155-2 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes no 0 0 0 0 By MS/MS 1.5 0.5 1 1 2 76.993 76.993 2;3 2.0087E-09 25059 20211116_3428_TMUAki_TMT10x_P_F1 136.63 120 3691000 5692800 0 5024700 4012000 8226000 4848900 4809800 4304700 4637800 4851600 3435700 5309500 185850 5221100 3859900 8105900 4857800 5057500 4422500 4536600 4663200 1 1 0 1 1 1 1 1 1 1 1 3691000 5692800 0 5024700 4012000 8226000 4848900 4809800 4304700 4637800 4851600 3435700 5309500 185850 5221100 3859900 8105900 4857800 5057500 4422500 4536600 4663200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 550800000 550800000 0 5613 602 5237 30143;30144 35999;36000 35999 2 FLDAGHK Unmodified 786.40244 0.40243801 868 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 By MS/MS 6 0 1 1 34.875 34.852 3 0.048016 7415 20211116_3434_TMUAki_TMT10x_P_F6 47.849 32.409 1034300 1639800 0 1442100 1143300 1496200 1115900 601280 758770 771520 1145900 962830 1529300 65526 1486000 1094100 1500800 1122300 661600 801280 746490 1093400 1 1 0 1 1 1 1 1 1 1 1 1034300 1639800 0 1442100 1143300 1496200 1115900 601280 758770 771520 1145900 962830 1529300 65526 1486000 1094100 1500800 1122300 661600 801280 746490 1093400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8147000 8147000 0 5614 868 5238 30145 36001 36001 1 FLDELEDEAK Unmodified 1207.5608 0.56084872 3244 Q9Y2R0 COA3 Cytochrome c oxidase assembly factor 3 homolog, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 69.605 69.605 2 1.7124E-12 24066 20211116_3439_TMUAki_TMT10x_S_F1 190.02 144.86 8425200 13187000 37030 14836000 9056700 10372000 7240800 4882000 4865700 4396500 8255800 7844900 12311000 741860 14952000 8640600 10718000 7366100 5226200 5174300 4313800 7859100 1 1 1 1 1 1 1 1 1 1 1 8425200 13187000 37030 14836000 9056700 10372000 7240800 4882000 4865700 4396500 8255800 7844900 12311000 741860 14952000 8640600 10718000 7366100 5226200 5174300 4313800 7859100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 387030000 387030000 0 5615 3244 5239 30146;30147 36002;36003 36003 2 FLDGELPLDSFIDVYQSK Unmodified 2085.0306 0.030638012 2843 Q9H9H4 VPS37B Vacuolar protein sorting-associated protein 37B yes yes 0 0 0 0 By matching By MS/MS 3.5 0.5 1 1 1 1 81.919 81.887 3 0.0096782 27858 20211116_3442_TMUAki_TMT10x_S_F4 47.942 31.636 1692400 2880200 33092 2827300 2506400 2090800 2201100 1473500 1497900 1632300 2302200 1575800 2687300 161080 2877000 2396200 2161500 2226900 1534100 1583100 1587700 2195900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1692400 2880200 33092 2827300 2506400 2090800 2201100 1473500 1497900 1632300 2302200 1575800 2687300 161080 2877000 2396200 2161500 2226900 1534100 1583100 1587700 2195900 2 2 1 2 2 2 2 2 2 2 2 132330000 43087000 89239000 5616 2843 5240 30148;30149 36004;36005 36004 2 FLDGIYVSEK Unmodified 1169.5968 0.5968403 904 P32969 RPL9 60S ribosomal protein L9 yes yes 0 0 0 0 By MS/MS By MS/MS 4.56 1.64 1 1 3 3 4 4 2 11 7 67.826 67.794 2;3 1.3566E-18 21726 20211116_3431_TMUAki_TMT10x_P_F4 238.51 186.26 213590000 340540000 2773500 358640000 242570000 285930000 219660000 199340000 200930000 201400000 254410000 198890000 317830000 20167000 363510000 232140000 293820000 223430000 207100000 207130000 196610000 243760000 23 23 14 23 23 23 23 23 23 23 23 115700000 182290000 1537300 188460000 143610000 202620000 130110000 108280000 108550000 108740000 135570000 107730000 170120000 11019000 192040000 137420000 203420000 132010000 114870000 112330000 106180000 129940000 14 14 8 14 14 14 14 14 14 14 14 97896000 158250000 1236300 170180000 98961000 83306000 89556000 91057000 92384000 92655000 118830000 91159000 147710000 9147900 171470000 94718000 90399000 91420000 92237000 94799000 90425000 113820000 9 9 6 9 9 9 9 9 9 9 9 26114000000 14332000000 11782000000 5617 904 5241 30150;30151;30152;30153;30154;30155;30156;30157;30158;30159;30160;30161;30162;30163;30164;30165;30166;30167 36006;36007;36008;36009;36010;36011;36012;36013;36014;36015;36016;36017;36018;36019;36020;36021;36022;36023;36024;36025;36026;36027;36028;36029;36030 36010 25 FLDGNELTLADCNLLPK Unmodified 1931.9663 0.96626362 80 O00299 CLIC1 Chloride intracellular channel protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.93 0.961 1 4 4 5 8 6 79.054 79.07 2;3 1.3552E-42 25352 20211116_3434_TMUAki_TMT10x_P_F6 218.85 188.92 80299000 127750000 175290 122030000 91484000 114860000 100080000 69089000 68774000 78787000 98207000 74764000 119180000 6046500 124790000 87919000 116430000 100100000 72845000 72380000 76548000 93825000 17 17 5 17 17 17 17 17 17 17 17 39253000 61475000 98337 58738000 37147000 67145000 43749000 35050000 35613000 39231000 48247000 36548000 57353000 3099900 60242000 35777000 67163000 43779000 37381000 37035000 38142000 46151000 9 9 3 9 9 9 9 9 9 9 9 41046000 66276000 76957 63290000 54336000 47716000 56336000 34039000 33161000 39556000 49960000 38217000 61831000 2946700 64544000 52142000 49263000 56322000 35464000 35346000 38405000 47675000 8 8 2 8 8 8 8 8 8 8 8 24412000000 11256000000 13155000000 5618 80 5242 30168;30169;30170;30171;30172;30173;30174;30175;30176;30177;30178;30179;30180;30181 36031;36032;36033;36034;36035;36036;36037;36038;36039;36040;36041;36042;36043;36044;36045;36046;36047;36048 36037 18 FLDGNEMTLADCNLLPK Oxidation (M) 1965.9176 0.91759886 3342 Q9Y696 CLIC4 Chloride intracellular channel protein 4 yes yes 0 0 1 0 By MS/MS By MS/MS 5.4 1.02 1 2 1 1 1 4 76.133 76.139 3 6.4176E-06 25312 20211116_3433_TMUAki_TMT10x_P_F5 96.666 85.226 14060000 24683000 302750 21826000 17977000 20850000 18544000 17473000 17329000 17700000 19081000 13094000 23021000 1502700 22453000 17270000 21225000 18743000 17943000 17745000 17277000 18352000 4 4 4 4 4 4 4 4 4 4 4 3038200 4730900 44412 4809300 3309100 6315000 3903300 3547000 3664200 3777800 4036800 2829200 4414700 297070 4923200 3190500 6278200 3920800 3752900 3751400 3680000 3882600 1 1 1 1 1 1 1 1 1 1 1 11022000 19952000 258340 17016000 14668000 14535000 14641000 13926000 13665000 13922000 15044000 10264000 18607000 1205600 17530000 14080000 14947000 14822000 14190000 13994000 13597000 14470000 3 3 3 3 3 3 3 3 3 3 3 3010900000 851070000 2159800000 5619 3342 5243 30182;30183;30184;30185;30186 36049;36050;36051;36052 36049 3291 4 FLDINLYK Unmodified 1024.5593 0.55933258 2926 Q9NRF8 CTPS2 CTP synthase 2 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 75.879 75.833 2 0.0013289 24689 20211116_3436_TMUAki_TMT10x_P_F8 123.92 25.524 12185000 19918000 57339 18335000 14853000 16713000 15089000 11795000 10850000 12921000 13572000 11346000 18580000 1053100 18792000 14248000 17015000 15162000 12274000 11320000 12572000 13008000 3 3 2 3 3 3 3 3 3 3 3 5184000 8291500 12293 7941700 5635700 8889100 6274100 4763600 4414500 5260600 5641300 4826900 7735500 447580 8140700 5420600 8904500 6273100 5066400 4615900 5117300 5404000 1 1 1 1 1 1 1 1 1 1 1 7001300 11627000 45046 10393000 9217400 7823600 8814700 7031000 6435100 7659900 7930900 6518900 10845000 605540 10651000 8827600 8110800 8888500 7207500 6703800 7455200 7604400 2 2 1 2 2 2 2 2 2 2 2 595900000 376680000 219220000 5620 2926 5244 30187;30188 36053;36054;36055 36053 3 FLDSTGSR Unmodified 881.4243 0.42429566 3349 Q9Y6E2;Q9Y6E2-2 BZW2 Basic leucine zipper and W2 domain-containing protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 35.916 35.978 2 0.0016745 9298 20211116_3442_TMUAki_TMT10x_S_F4 118.89 92.723 346000 562410 28173 578970 428150 433120 405920 269050 280620 265120 430060 322370 524850 56093 587290 411680 446540 409020 281710 296270 259090 410230 2 2 2 2 2 2 2 2 2 2 2 127990 167130 20061 192790 172530 212650 135290 89161 108400 84448 142440 119320 156050 29932 195170 165710 212640 138350 96744 112660 82671 136350 1 1 1 1 1 1 1 1 1 1 1 218010 395280 8111.4 386170 255620 220470 270620 179890 172220 180670 287620 203050 368800 26161 392130 245970 233910 270670 184970 183610 176420 273880 1 1 1 1 1 1 1 1 1 1 1 13986000 3511100 10475000 5621 3349 5245 30189;30190 36056;36057 36057 2 FLEAGIYEVPIIITDSGNPPK Unmodified 2272.1991 0.19910032 727 P19022;P19022-2 CDH2 Cadherin-2 yes no 0 0 0 0 By matching By MS/MS 4 0.816 1 1 1 1 2 80.552 80.529 3 6.1902E-05 26045 20211116_3444_TMUAki_TMT10x_S_F5 68.49 52.183 1943400 3018600 13925 2761600 2344100 1922800 2298400 1571400 1598000 1709100 2257100 1809600 2815700 179710 2822900 2247300 2002700 2312100 1619500 1679700 1663500 2157000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1943400 3018600 13925 2761600 2344100 1922800 2298400 1571400 1598000 1709100 2257100 1809600 2815700 179710 2822900 2247300 2002700 2312100 1619500 1679700 1663500 2157000 1 1 1 1 1 1 1 1 1 1 1 1265900000 366450000 899460000 5622 727 5246 30191;30192;30193 36058 36058 1 FLEDGPCQQAAQVLIR Unmodified 1843.9251 0.9250675 2316 Q8WWQ0 PHIP PH-interacting protein yes yes 0 0 0 0 By MS/MS 6 0 1 1 69.463 69.378 3 8.8858E-22 21801 20211116_3445_TMUAki_TMT10x_S_F6 146 133.17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5623 2316 5247 30194 36059 36059 1 FLEEFITPIVK Unmodified 1334.7486 0.74858991 625 P11388;P11388-2;P11388-3;P11388-4 TOP2A DNA topoisomerase 2-alpha yes no 0 0 0 0 By MS/MS By MS/MS 6.92 0.954 1 3 4 4 7 5 80.262 80.271 2;3 4.4427E-30 28357 20211116_3446_TMUAki_TMT10x_S_F7 271.37 210.61 72024000 117540000 135560 106860000 71849000 95741000 82718000 64365000 68300000 73367000 85312000 67056000 109640000 5327300 109610000 69124000 97516000 82889000 67295000 70719000 71283000 81771000 11 11 4 11 11 11 11 11 11 11 11 33789000 53333000 5421.5 48543000 30822000 56058000 36638000 29610000 32355000 34291000 38144000 31457000 49748000 2303300 49972000 29671000 56050000 36727000 31581000 33309000 33297000 36617000 6 6 2 6 6 6 6 6 6 6 6 38235000 64208000 130130 58322000 41027000 39684000 46079000 34755000 35945000 39076000 47169000 35599000 59891000 3024000 59635000 39453000 41466000 46162000 35714000 37410000 37986000 45154000 5 5 2 5 5 5 5 5 5 5 5 13450000000 6432200000 7018100000 5624 625 5248 30195;30196;30197;30198;30199;30200;30201;30202;30203;30204;30205;30206 36060;36061;36062;36063;36064;36065;36066;36067;36068;36069;36070 36067 11 FLEEHPGGEEVLR Unmodified 1510.7416 0.74160705 461 P00167;P00167-2;P00167-3 CYB5A Cytochrome b5 yes no 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 2 3 45.281 45.063 3 1.2325E-09 15122 20211116_3441_TMUAki_TMT10x_S_F3 135.04 91.958 6015200 9828000 0 10504000 8422800 7496600 6353800 6766800 6777200 6541100 8351500 5600200 9173100 463210 10623000 8019700 7806100 6566200 6910100 6932000 6397700 8007600 3 3 0 3 3 3 3 3 3 3 3 2803600 4077900 0 4756000 5290100 4685100 3435900 2423100 2482500 2543800 3469000 2610300 3807600 248970 4802900 5024600 4726400 3552600 2581400 2602300 2479400 3315900 1 1 0 1 1 1 1 1 1 1 1 3211500 5750100 0 5747900 3132700 2811600 2917900 4343700 4294700 3997300 4882400 2989800 5365500 214250 5820100 2995100 3079800 3013600 4328700 4329700 3918300 4691700 2 2 0 2 2 2 2 2 2 2 2 541950000 333410000 208540000 5625 461 5249 30207;30208;30209;30210;30211 36071;36072;36073;36074;36075 36075 5 FLEEHPGGEEVLREQAGGDATENFEDVGHSTDAR Unmodified 3697.6517 0.65168901 461 P00167;P00167-2;P00167-3 CYB5A Cytochrome b5 yes no 0 0 0 1 By matching By MS/MS 2.33 0.471 2 1 1 2 52.257 51.994 5 0.0015551 17937 20211116_3441_TMUAki_TMT10x_S_F3 53.553 49.326 1003200 1611900 0 1796000 944180 896780 813840 1347300 1356000 1295800 1360700 934010 1504700 71773 1805800 901360 979170 849110 1345500 1356000 1267700 1312400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1003200 1611900 0 1796000 944180 896780 813840 1347300 1356000 1295800 1360700 934010 1504700 71773 1805800 901360 979170 849110 1345500 1356000 1267700 1312400 1 1 0 1 1 1 1 1 1 1 1 523120000 200400000 322720000 5626 461 5250 30212;30213;30214 36076 36076 1 FLEESVSMSPEER Oxidation (M) 1554.6872 0.68718822 683 P15374 UCHL3 Ubiquitin carboxyl-terminal hydrolase isozyme L3 yes yes 0 0 1 0 By MS/MS 1 0 1 1 48.184 48.184 3 0.023502 13281 20211116_3428_TMUAki_TMT10x_P_F1 51.939 45.085 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5627 683 5251 30215 36077 36077 768 1 FLEETNCLYAAEGQR Unmodified 1799.8148 0.81484835 1658 Q13619;Q13619-2 CUL4A Cullin-4A yes no 0 0 0 0 By MS/MS 2 0 1 1 61.833 61.554 3 2.693E-05 20315 20211116_3429_TMUAki_TMT10x_P_F2 85.734 69.595 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5628 1658 5252 30216 36078 36078 1 FLEEYLSSTPQR Unmodified 1468.7198 0.71980898 1320 P61803 DAD1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.756 2 3 2 5 2 67.044 67.106 2;3 6.0494E-15 20552 20211116_3444_TMUAki_TMT10x_S_F5 183.95 144.94 10402000 18536000 52314 17691000 12854000 18051000 13984000 13714000 12147000 13410000 14280000 9685200 17293000 925760 18113000 12355000 18269000 14069000 14153000 12514000 13110000 13709000 4 4 3 4 4 4 4 4 4 4 4 5664500 10009000 17001 9751000 7802300 13275000 8584400 7920500 6672600 7764700 7870700 5274300 9338500 515410 10019000 7501900 13186000 8607500 8318600 6914400 7589800 7555500 2 2 2 2 2 2 2 2 2 2 2 4737200 8527000 35313 7939800 5051400 4775500 5400000 5793700 5474400 5645700 6409300 4410900 7954400 410350 8094100 4853100 5083100 5461500 5834800 5599200 5520000 6153800 2 2 1 2 2 2 2 2 2 2 2 2760400000 1761600000 998790000 5629 1320 5253 30217;30218;30219;30220;30221;30222;30223 36079;36080;36081;36082;36083 36082 5 FLEHKGPVFAPPYEPLPENVK Unmodified 2407.2576 0.25761826 624 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 63.518 63.8 4 5.6327E-10 19224 20211116_3447_TMUAki_TMT10x_S_F8 106.73 97.077 9218200 16270000 105330 15323000 14555000 14487000 11533000 13248000 12363000 12361000 13973000 8583400 15178000 874200 15686000 13883000 14782000 11882000 13506000 12598000 12109000 13429000 3 3 2 3 3 3 3 3 3 3 3 3283900 5537800 37462 5336400 4329100 7044600 4646000 4298000 3457900 4099400 4347800 3057900 5166600 321810 5483800 4161200 7009500 4659300 4502600 3601400 4011900 4166700 1 1 1 1 1 1 1 1 1 1 1 5934300 10732000 67864 9986300 10226000 7442100 6886900 8950000 8905500 8261200 9624900 5525400 10011000 552390 10202000 9721600 7772300 7222800 9003100 8997000 8096700 9262500 2 2 1 2 2 2 2 2 2 2 2 2495500000 1454900000 1040500000 5630 624 5254 30224;30225;30226 36084;36085;36086 36085 3 FLEMCNDLLAR Oxidation (M) 1396.6479 0.64790636 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 1 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 61.126 61.179 2 0.00039393 18933 20211116_3431_TMUAki_TMT10x_P_F4 95.642 75.501 16130000 25563000 13425 25117000 20504000 30768000 19386000 21386000 19965000 22028000 21586000 15017000 23851000 1217400 25739000 19621000 30785000 19740000 22237000 20343000 21488000 20773000 4 4 1 4 4 4 4 4 4 4 4 12707000 19360000 13425 19692000 16621000 26627000 15356000 16340000 14972000 16705000 16547000 11830000 18066000 977730 20170000 15897000 26467000 15630000 17144000 15304000 16300000 15914000 3 3 1 3 3 3 3 3 3 3 3 3422600 6202900 0 5424700 3883200 4140700 4029700 5046200 4993300 5323600 5038200 3186400 5785100 239640 5569900 3723800 4317800 4109700 5093200 5039300 5187900 4858700 1 1 0 1 1 1 1 1 1 1 1 1934000000 1550400000 383560000 5631 916 5255 30227;30228;30229;30230 36087;36088;36089;36090;36091 36087 1151 5 FLEMCNDLLAR Unmodified 1380.653 0.65299174 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.957 1 2 2 1 3 3 72.809 72.837 2 3.862E-11 23192 20211116_3445_TMUAki_TMT10x_S_F6 171.34 152.56 36188000 56247000 44095 62361000 37082000 41059000 38452000 21384000 19380000 23605000 38811000 33693000 52508000 2905600 62868000 35584000 42700000 38342000 22801000 21240000 22963000 36838000 9 9 3 9 9 9 9 9 9 9 9 22748000 34721000 44095 38869000 22235000 29583000 24159000 13184000 11623000 14068000 23639000 21181000 32414000 1842100 39221000 21366000 30342000 24017000 14258000 12800000 13703000 22431000 6 6 3 6 6 6 6 6 6 6 6 13439000 21526000 0 23491000 14848000 11476000 14293000 8200600 7756600 9537100 15173000 12513000 20094000 1063500 23647000 14218000 12359000 14325000 8543100 8440200 9259300 14407000 3 3 0 3 3 3 3 3 3 3 3 2705000000 1217900000 1487100000 5632 916 5255 30231;30232;30233;30234;30235;30236 36092;36093;36094;36095;36096;36097;36098;36099;36100 36100 9 FLENHEK Unmodified 915.44503 0.4450311 332 O75400;O75400-2;O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 0 0 0 0 By MS/MS 5 0 1 1 32.741 32.905 3 0.041619 6706 20211116_3444_TMUAki_TMT10x_S_F5 51.736 33.7 251190 427160 0 392650 275680 210470 292890 194840 242460 209040 306330 233840 398450 16228 400280 264450 225300 294630 199310 251130 203570 293530 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 251190 427160 0 392650 275680 210470 292890 194840 242460 209040 306330 233840 398450 16228 400280 264450 225300 294630 199310 251130 203570 293530 1 1 0 1 1 1 1 1 1 1 1 4043700 0 4043700 5633 332 5256 30237 36101 36101 1 FLEPTLR Unmodified 874.49125 0.49125301 678 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 5.29 1.03 2 2 2 1 3 4 51.647 51.859 2 0.0019737 15354 20211116_3433_TMUAki_TMT10x_P_F5 131.3 45.176 31826000 50677000 395600 57748000 45568000 48601000 35170000 43080000 39561000 40639000 44828000 29635000 47314000 3048700 58276000 43445000 49952000 36354000 44007000 40242000 39790000 43081000 8 8 4 8 8 8 8 8 8 8 8 13688000 20698000 57828 24172000 25861000 31585000 17677000 18721000 16552000 16790000 18729000 12745000 19326000 1248600 24525000 24587000 31430000 18324000 19626000 16966000 16478000 18000000 3 3 1 3 3 3 3 3 3 3 3 18137000 29979000 337770 33576000 19707000 17016000 17493000 24359000 23009000 23849000 26099000 16890000 27987000 1800100 33752000 18859000 18522000 18030000 24381000 23276000 23313000 25081000 5 5 3 5 5 5 5 5 5 5 5 2856200000 1611400000 1244800000 5634 678 5257 30238;30239;30240;30241;30242;30243;30244 36102;36103;36104;36105;36106;36107;36108;36109;36110 36103 9 FLEQQNAALRGELSQAR Unmodified 1930.0021 0.0020722706 995 P41219;P41219-2 PRPH Peripherin yes no 0 0 0 1 By MS/MS By matching 7 0 2 1 1 50.975 51.557 3 1.9859E-07 15901 20211116_3435_TMUAki_TMT10x_P_F7 102.89 78.64 3026200 5285500 65634 5345000 5377400 7406200 4073200 5524700 4441000 4442400 4597200 2818100 4932200 344990 5479400 5127300 7375500 4211200 5679700 4507400 4383200 4429900 1 1 1 1 1 1 1 1 1 1 1 3026200 5285500 65634 5345000 5377400 7406200 4073200 5524700 4441000 4442400 4597200 2818100 4932200 344990 5479400 5127300 7375500 4211200 5679700 4507400 4383200 4429900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1546200000 544100000 1002100000 5635 995 5258 30245;30246 36111 36111 1 FLEQQTLCNNQVNDLTTALK Unmodified 2349.1635 0.16345987 3290 Q9Y448 KNSTRN Small kinetochore-associated protein yes yes 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 76.312 76.36 3 1.7939E-24 26709 20211116_3446_TMUAki_TMT10x_S_F7 164.97 149.72 13735000 23233000 0 21477000 17248000 18074000 16943000 13291000 14464000 15759000 17395000 12788000 21673000 694960 21984000 16526000 18515000 17125000 13829000 14927000 15289000 16690000 4 4 0 4 4 4 4 4 4 4 4 2559800 4234700 0 3782100 2744400 5693600 3304500 3016000 2951500 2865200 3250900 2383200 3949700 191960 3918900 2644100 5622200 3311700 3197100 3028700 2804500 3126800 1 1 0 1 1 1 1 1 1 1 1 11176000 18999000 0 17695000 14504000 12380000 13638000 10275000 11512000 12893000 14144000 10405000 17723000 503000 18065000 13882000 12893000 13813000 10631000 11898000 12484000 13563000 3 3 0 3 3 3 3 3 3 3 3 1912800000 527220000 1385600000 5636 3290 5259 30247;30248;30249 36112;36113;36114;36115 36114 4 FLESLPEEEQQR Unmodified 1503.7205 0.72053726 705 P17480;P17480-2 UBTF Nucleolar transcription factor 1 yes no 0 0 0 0 By MS/MS By MS/MS 1.83 0.898 3 1 2 3 3 56.201 56.027 2;3 3.4673E-19 16483 20211116_3428_TMUAki_TMT10x_P_F1 220.17 183.78 9358200 15836000 131740 17573000 14585000 17710000 10904000 14055000 14839000 12887000 13908000 8714100 14783000 933200 17807000 13898000 17951000 11375000 14439000 14891000 12634000 13446000 5 5 3 5 5 5 5 5 5 5 5 6061400 9719600 100750 10842000 11434000 14668000 8414600 8527500 9287700 8150800 8543300 5644300 9073600 639850 11039000 10892000 14569000 8720200 8968800 9384000 7976000 8264500 3 3 2 3 3 3 3 3 3 3 3 3296800 6116200 30991 6731400 3151000 3042000 2489400 5527300 5551700 4735700 5365100 3069800 5709400 293350 6768500 3006100 3382400 2654500 5470700 5507300 4657800 5181300 2 2 1 2 2 2 2 2 2 2 2 1108600000 677060000 431540000 5637 705 5260 30250;30251;30252;30253;30254;30255 36116;36117;36118;36119;36120;36121;36122 36117 7 FLESLPEEEQQRVLGEEK Unmodified 2159.0746 0.074628091 705 P17480;P17480-2 UBTF Nucleolar transcription factor 1 yes no 0 0 0 1 By MS/MS 1 0 1 1 63.487 63.223 3 1.7144E-05 21466 20211116_3439_TMUAki_TMT10x_S_F1 85.362 62.56 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5638 705 5261 30256 36123 36123 1 FLESPDFQPNIAK Unmodified 1504.7562 0.75619449 1731 Q14738;Q14738-3;Q14738-2;Q13362;Q13362-4;Q13362-5;Q13362-3;Q13362-2 PPP2R5D;PPP2R5C Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform;Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform yes no 0 0 0 0 By MS/MS By MS/MS 5.6 0.8 3 1 1 4 1 69.263 69.284 2;3 4.6624E-05 21379 20211116_3434_TMUAki_TMT10x_P_F6 97.214 82.242 13323000 20920000 163620 20559000 15341000 24497000 15693000 13153000 12152000 12802000 16127000 12406000 19519000 1230100 21058000 14725000 24458000 15790000 13935000 12658000 12518000 15434000 4 4 3 4 4 4 4 4 4 4 4 13323000 20920000 163620 20559000 15341000 24497000 15693000 13153000 12152000 12802000 16127000 12406000 19519000 1230100 21058000 14725000 24458000 15790000 13935000 12658000 12518000 15434000 4 4 3 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1120200000 1120200000 0 5639 1731 5262 30257;30258;30259;30260;30261 36124;36125;36126;36127;36128;36129;36130 36128 7 FLEVIKPFCAVLPEIQKPER Unmodified 2412.3239 0.32392368 2846 Q9H9S3;Q9H9S3-3;Q9H9S3-2 SEC61A2 Protein transport protein Sec61 subunit alpha isoform 2 yes no 0 0 0 2 By MS/MS 3.5 0.5 1 1 2 77.967 77.893 4 4.1471E-05 26262 20211116_3442_TMUAki_TMT10x_S_F4 79.69 64.92 4412500 8076800 20018 6842900 5921700 6096700 5983700 4605900 3943100 4679700 5283400 4108600 7531900 405620 7056900 5680700 6223400 6003100 4760400 4148300 4567400 5055200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4412500 8076800 20018 6842900 5921700 6096700 5983700 4605900 3943100 4679700 5283400 4108600 7531900 405620 7056900 5680700 6223400 6003100 4760400 4148300 4567400 5055200 1 1 1 1 1 1 1 1 1 1 1 1732900000 0 1732900000 5640 2846 5263 30262;30263 36131 36131 1 FLEYSISDEITK Unmodified 1443.7133 0.71332662 2663 Q9BTE3;Q9BTE3-2;Q9BTE3-3 MCMBP Mini-chromosome maintenance complex-binding protein yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 73.856 73.806 3 3.6692E-08 24625 20211116_3442_TMUAki_TMT10x_S_F4 138.75 105.07 2051300 3551400 39711 3209400 2060300 1884400 2075600 1725000 1476600 1797500 2344200 1910300 3312600 207210 3278500 1978300 1997800 2086100 1764100 1559200 1752600 2234500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2051300 3551400 39711 3209400 2060300 1884400 2075600 1725000 1476600 1797500 2344200 1910300 3312600 207210 3278500 1978300 1997800 2086100 1764100 1559200 1752600 2234500 1 1 1 1 1 1 1 1 1 1 1 405750000 0 405750000 5641 2663 5264 30264;30265 36132 36132 1 FLFDSVSSQNVGLR Unmodified 1567.7995 0.79945628 84 O00410;O00410-2;O00410-3 IPO5 Importin-5 yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 72.255 72.142 2;3 6.3518E-14 24574 20211116_3429_TMUAki_TMT10x_P_F2 128.21 114.8 1216000 1855700 3414 2016300 1348100 1220800 1419200 1053300 1049300 1141900 1413400 1132300 1732100 105850 2033700 1294600 1289000 1424400 1082100 1096600 1111600 1352100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1216000 1855700 3414 2016300 1348100 1220800 1419200 1053300 1049300 1141900 1413400 1132300 1732100 105850 2033700 1294600 1289000 1424400 1082100 1096600 1111600 1352100 1 1 1 1 1 1 1 1 1 1 1 127460000 0 127460000 5642 84 5265 30266;30267;30268 36133;36134;36135 36133 3 FLFEGQR Unmodified 895.4552 0.45520186 1398 P63165;P63165-2;G2XKQ0 SUMO1 Small ubiquitin-related modifier 1;Small ubiquitin-related modifier yes no 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 51.847 52.168 2 0.002183 14635 20211116_3445_TMUAki_TMT10x_S_F6 128.86 99.523 33840000 54095000 136370 59752000 48783000 51927000 34807000 36790000 36520000 32572000 43514000 31508000 50498000 2939300 60440000 46419000 53043000 36090000 38044000 37326000 31985000 41759000 7 7 3 7 7 7 7 7 7 7 7 20164000 30860000 95045 34276000 35063000 40962000 24064000 20113000 20575000 18880000 25226000 18774000 28809000 1857700 34826000 33342000 40848000 24876000 21464000 21249000 18490000 24191000 4 4 2 4 4 4 4 4 4 4 4 13676000 23235000 41329 25476000 13720000 10966000 10744000 16678000 15945000 13692000 18288000 12733000 21689000 1081600 25614000 13077000 12194000 11214000 16579000 16077000 13495000 17569000 3 3 1 3 3 3 3 3 3 3 3 1964100000 760150000 1203900000 5643 1398 5266 30269;30270;30271;30272;30273;30274 36136;36137;36138;36139;36140;36141;36142;36143 36142 8 FLFENQTPAHVYYR Unmodified 1783.8682 0.86820455 156 O15042;O15042-2;O15042-3 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 0 0 0 0 By MS/MS By MS/MS 4.33 3.35 3 1 2 3 3 55.92 56.195 3 1.189E-19 16555 20211116_3428_TMUAki_TMT10x_P_F1 145.52 135.67 18392000 31555000 328380 29817000 25646000 38394000 21744000 30999000 26962000 25902000 26408000 17125000 29437000 1711500 30669000 24498000 38418000 22421000 31738000 27181000 25507000 25492000 5 5 2 5 5 5 5 5 5 5 5 11203000 18855000 197470 18153000 17855000 30788000 15405000 19765000 17014000 16395000 16181000 10431000 17591000 1014000 18757000 17058000 30338000 15804000 20551000 17209000 16151000 15635000 3 3 1 3 3 3 3 3 3 3 3 7188700 12699000 130920 11664000 7790100 7605500 6338800 11234000 9948000 9506500 10227000 6694200 11846000 697520 11911000 7439100 8079800 6617300 11187000 9972300 9355700 9857300 2 2 1 2 2 2 2 2 2 2 2 2199000000 1512100000 686920000 5644 156 5267 30275;30276;30277;30278;30279;30280 36144;36145;36146;36147;36148;36149;36150;36151 36144 8 FLFPFFDSAYQGFASGNLER Unmodified 2312.0902 0.090218576 703 P17174;P17174-2 GOT1 Aspartate aminotransferase, cytoplasmic yes no 0 0 0 0 By MS/MS 4 0 1 1 82.56 82.551 3 5.5022E-16 28114 20211116_3442_TMUAki_TMT10x_S_F4 128.1 116.58 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5645 703 5268 30281 36152 36152 1 FLFSLFGQK Unmodified 1085.591 0.59096706 1603 Q13155;Q13155-2 AIMP2 Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 7.4 0.49 3 2 2 3 80.433 80.445 2;3 1.5678E-10 28010 20211116_3435_TMUAki_TMT10x_P_F7 219.72 156.24 43586000 75769000 47752 64447000 63211000 76293000 45010000 50501000 39909000 47407000 46915000 40582000 70658000 3716300 66724000 60141000 76412000 46450000 52555000 41073000 46427000 45040000 5 5 2 5 5 5 5 5 5 5 5 19364000 31931000 0 26488000 25377000 50672000 14329000 21475000 18141000 20922000 20412000 18028000 29774000 1487000 27768000 24042000 49473000 15230000 23291000 18369000 20456000 19620000 2 2 0 2 2 2 2 2 2 2 2 24223000 43839000 47752 37959000 37834000 25621000 30681000 29027000 21768000 26484000 26503000 22554000 40884000 2229300 38956000 36100000 26938000 31220000 29264000 22703000 25971000 25420000 3 3 2 3 3 3 3 3 3 3 3 5570600000 2386100000 3184500000 5646 1603 5269 30282;30283;30284;30285;30286 36153;36154;36155;36156;36157;36158 36153 6 FLGCVDIK Unmodified 950.48954 0.48953845 3195 Q9UNM6;Q9UNM6-2 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 61.382 61.985 2 0.004299 20164 20211116_3435_TMUAki_TMT10x_P_F7 98.523 56.871 19820000 31841000 296500 33883000 26182000 31023000 20465000 23489000 20634000 20446000 23784000 18457000 29719000 2008700 34379000 24978000 31612000 21062000 24171000 21096000 20094000 22846000 2 2 2 2 2 2 2 2 2 2 2 13128000 19781000 51722 22789000 18190000 24140000 13117000 13486000 11608000 11144000 13922000 12224000 18469000 1207500 23056000 17317000 24270000 13524000 14179000 11957000 10980000 13359000 1 1 1 1 1 1 1 1 1 1 1 6692500 12060000 244780 11094000 7991600 6883100 7347700 10004000 9025600 9302000 9862000 6233200 11250000 801180 11323000 7661300 7341900 7538700 9992400 9138200 9113800 9487600 1 1 1 1 1 1 1 1 1 1 1 1259400000 768000000 491400000 5647 3195 5270 30287;30288 36159 36159 1 FLGCVDIKDLPVSEQQER Unmodified 2132.0572 0.057203888 3195 Q9UNM6;Q9UNM6-2 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 67.117 67.05 3 1.3515E-06 20891 20211116_3445_TMUAki_TMT10x_S_F6 100.02 82.944 8912000 17331000 0 11868000 17381000 13691000 9459400 20721000 19989000 20541000 16710000 8297100 16151000 741240 12520000 16459000 13993000 10335000 20707000 19758000 20069000 16221000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8912000 17331000 0 11868000 17381000 13691000 9459400 20721000 19989000 20541000 16710000 8297100 16151000 741240 12520000 16459000 13993000 10335000 20707000 19758000 20069000 16221000 2 2 0 2 2 2 2 2 2 2 2 555830000 0 555830000 5648 3195 5271 30289;30290 36160;36161;36162 36162 3 FLGDIEVWDQAEK Unmodified 1548.746 0.74602373 819 P26639;P26639-2 TARS Threonine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 1.6 0.49 2 3 3 2 78.435 78.408 2;3 2.1517E-15 25654 20211116_3428_TMUAki_TMT10x_P_F1 178.67 135.92 18547000 28736000 10875 28575000 19776000 27701000 23880000 13887000 12370000 15995000 22711000 17269000 26813000 1531500 29149000 19063000 27963000 23652000 14879000 13455000 15534000 21588000 3 3 1 3 3 3 3 3 3 3 3 14312000 22087000 10875 21475000 15169000 24213000 18662000 11390000 10048000 12665000 17408000 13326000 20608000 1176800 21992000 14631000 24210000 18481000 12266000 10860000 12317000 16565000 2 2 1 2 2 2 2 2 2 2 2 4234600 6648800 0 7100100 4606200 3487200 5217800 2496400 2322100 3329500 5302300 3942900 6205700 354740 7157400 4431900 3753100 5171000 2613100 2594800 3217500 5022700 1 1 0 1 1 1 1 1 1 1 1 2412200000 1566800000 845400000 5649 819 5272 30291;30292;30293;30294;30295 36163;36164;36165 36163 3 FLGMHPCER Oxidation (M) 1161.5059 0.50593357 3339 Q9Y678 COPG1 Coatomer subunit gamma-1 yes yes 0 0 1 0 By MS/MS By matching 5 0.707 1 2 1 3 1 31.264 31.284 3 0.02722 7243 20211116_3433_TMUAki_TMT10x_P_F5 50.805 45.839 755570 1229600 1180.2 1074500 1359200 1283900 903770 722280 841330 741930 1054200 703520 1146700 72196 1110300 1291900 1282400 938620 763290 866190 723800 1010300 2 2 2 2 2 2 2 2 2 2 2 755570 1229600 1180.2 1074500 1359200 1283900 903770 722280 841330 741930 1054200 703520 1146700 72196 1110300 1291900 1282400 938620 763290 866190 723800 1010300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 60602000 60188000 413180 5650 3339 5273 30296;30297;30298;30299 36166;36167 36166 3290 2 FLGMHPCER Unmodified 1145.511 0.51101895 3339 Q9Y678 COPG1 Coatomer subunit gamma-1 yes yes 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 35.743 35.951 3 0.0051289 7807 20211116_3434_TMUAki_TMT10x_P_F6 63.426 57.6 660370 933170 18248 1003100 845080 985050 698810 406810 418900 459980 665390 614980 871010 71149 1018100 807520 991630 707820 444390 447150 447050 634250 2 2 1 2 2 2 2 2 2 2 2 660370 933170 18248 1003100 845080 985050 698810 406810 418900 459980 665390 614980 871010 71149 1018100 807520 991630 707820 444390 447150 447050 634250 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30984000 30984000 0 5651 3339 5273 30300;30301 36168;36169 36168 2 FLGPEDSHVVVASNSPCLK Unmodified 2055.0095 0.0095254139 1563 Q12788 TBL3 Transducin beta-like protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 55.767 56.168 3 5.0376E-23 16341 20211116_3445_TMUAki_TMT10x_S_F6 161.8 141.96 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5652 1563 5274 30302;30303 36170;36171 36171 2 FLGSGPR Unmodified 732.39187 0.39187332 547 P07954;P07954-2 FH Fumarate hydratase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.58 2.53 2 1 2 5 2 4 8 35.974 36.184 2 0.0012871 7869 20211116_3447_TMUAki_TMT10x_S_F8 143.37 81.37 6169100 9224600 55290 10020000 6658400 6398400 6100600 5883500 5852600 5850300 6964700 5743900 8610500 495040 10112000 6368900 6730100 6209600 6007000 6004300 5715100 6684200 8 8 6 8 8 8 8 8 8 8 8 1389700 2247000 28270 2168500 2126700 2622100 1596800 1424900 1428200 1399000 1656300 1294100 2096400 151880 2224500 2027600 2616300 1642200 1508400 1468400 1367400 1590700 3 3 3 3 3 3 3 3 3 3 3 4779400 6977600 27020 7851800 4531700 3776300 4503800 4458600 4424400 4451300 5308400 4449700 6514100 343150 7887400 4341300 4113800 4567400 4498600 4535900 4347700 5093500 5 5 3 5 5 5 5 5 5 5 5 522040000 265240000 256800000 5653 547 5275 30304;30305;30306;30307;30308;30309;30310;30311;30312;30313;30314;30315 36172;36173;36174;36175;36176;36177;36178;36179;36180;36181;36182;36183;36184 36184 13 FLGTEVLLR Unmodified 1046.6124 0.61243078 2161 Q8IXT5 RBM12B RNA-binding protein 12B yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 68.116 68.115 2 6.266E-06 21491 20211116_3436_TMUAki_TMT10x_P_F8 169.57 85.816 13911000 22230000 134330 20568000 15538000 23483000 16895000 15908000 14740000 16229000 17235000 12953000 20736000 1298500 21143000 14940000 23573000 16999000 16566000 15178000 15837000 16548000 3 3 2 3 3 3 3 3 3 3 3 8808400 13822000 134330 13032000 9450800 17610000 10638000 10135000 9645700 10341000 10980000 8202500 12894000 864470 13419000 9099800 17489000 10698000 10688000 9903600 10091000 10551000 2 2 2 2 2 2 2 2 2 2 2 5102600 8407800 0 7536000 6086800 5873500 6257000 5773900 5094000 5888100 6254400 4751000 7842100 434010 7724600 5840400 6083800 6301800 5878900 5274300 5746000 5997400 1 1 0 1 1 1 1 1 1 1 1 871750000 378930000 492820000 5654 2161 5276 30316;30317 36185;36186;36187 36185 3 FLGTSGQNVSDIFR Unmodified 1539.7682 0.76815616 1086 P49005 POLD2 DNA polymerase delta subunit 2 yes yes 0 0 0 0 By MS/MS 1 0 1 1 70.527 70.378 2 0.045374 24335 20211116_3439_TMUAki_TMT10x_S_F1 53.567 29.478 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5655 1086 5277 30318 36188 36188 1 FLGTTCYDR Unmodified 1131.5019 0.50189405 200 O43172;O43172-2 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 45.728 45.847 2 0.00017105 11752 20211116_3434_TMUAki_TMT10x_P_F6 100.09 77.96 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5656 200 5278 30319;30320 36189;36190 36189 2 FLHCTEK Unmodified 933.43784 0.43783723 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 By matching By MS/MS 5 0 2 1 1 33.368 33.429 3 0.018017 6785 20211116_3444_TMUAki_TMT10x_S_F5 69.984 47.055 290650 445670 608.28 464260 246770 253560 290740 212930 237370 220370 351070 270630 415920 24049 469150 237750 270390 290960 218760 247850 214920 335150 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 290650 445670 608.28 464260 246770 253560 290740 212930 237370 220370 351070 270630 415920 24049 469150 237750 270390 290960 218760 247850 214920 335150 1 1 1 1 1 1 1 1 1 1 1 34017000 29224000 4792700 5657 352 5279 30321;30322 36191 36191 1 FLHDNMVEIPNR Oxidation (M) 1499.7191 0.71909747 1129 P49916;P49916-3;P49916-4;P49916-2 LIG3 DNA ligase 3 yes no 0 0 1 0 By MS/MS 4.5 0.5 1 1 2 43.739 43.84 3 0.0011838 11849 20211116_3431_TMUAki_TMT10x_P_F4 68.515 58.828 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5658 1129 5280 30323;30324 36192;36193 36192 1489 2 FLHKHDLDLICR Unmodified 1565.8137 0.81366656 1333;957 P36873;P36873-2;P62136;P62136-2;P62136-3 PPP1CC;PPP1CA Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit no no 0 0 0 1 By MS/MS 8 0 1 1 46.19 46.327 4 0.00032597 12644 20211116_3436_TMUAki_TMT10x_P_F8 84.718 68.828 1657300 2434600 21274 2532500 3164300 3550500 2150100 2127600 1737500 1872000 2069200 1543200 2272100 178330 2591900 3009900 3522200 2221200 2227300 1797400 1838800 1985800 1 1 1 1 1 1 1 1 1 1 1 1657300 2434600 21274 2532500 3164300 3550500 2150100 2127600 1737500 1872000 2069200 1543200 2272100 178330 2591900 3009900 3522200 2221200 2227300 1797400 1838800 1985800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 170330000 170330000 0 5659 957;1333 5281 30325 36194 36194 1 FLHQDIDSGQGIR Unmodified 1484.7372 0.73719038 630 P11717 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 40.099 40.297 3 2.4067E-09 10855 20211116_3442_TMUAki_TMT10x_S_F4 129.29 110.05 3199900 5415700 64715 4424200 4485400 2586900 4038800 2717000 3644100 2718900 3634300 2979300 5049700 265630 4556000 4288500 2751600 4107900 2755900 3724200 2655400 3506200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3199900 5415700 64715 4424200 4485400 2586900 4038800 2717000 3644100 2718900 3634300 2979300 5049700 265630 4556000 4288500 2751600 4107900 2755900 3724200 2655400 3506200 2 2 1 2 2 2 2 2 2 2 2 139130000 0 139130000 5660 630 5282 30326;30327 36195;36196;36197 36196 3 FLHSEALLAVAQNR Unmodified 1567.8471 0.84707518 174 O15213 WDR46 WD repeat-containing protein 46 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 56.89 56.89 3 2.1676E-09 16830 20211116_3428_TMUAki_TMT10x_P_F1 128.31 105.17 1834700 2782300 0 2837100 2505400 3810100 2090200 2364700 2178100 2096700 2178000 1708000 2596400 135680 2905000 2390200 3789000 2144600 2469200 2212000 2058800 2101000 1 1 0 1 1 1 1 1 1 1 1 1834700 2782300 0 2837100 2505400 3810100 2090200 2364700 2178100 2096700 2178000 1708000 2596400 135680 2905000 2390200 3789000 2144600 2469200 2212000 2058800 2101000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 257630000 257630000 0 5661 174 5283 30328;30329 36198;36199 36198 2 FLHTEIR Unmodified 914.4974 0.49740102 1919 Q5JRX3;Q5JRX3-2;Q5JRX3-3 PITRM1 Presequence protease, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 35.188 35.364 3 0.0015025 7678 20211116_3444_TMUAki_TMT10x_S_F5 115.46 77.221 374930 627340 40461 656010 391860 398100 530130 377730 359950 372120 488030 349400 585480 69029 663360 381660 421010 525230 384910 378180 363670 466820 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 374930 627340 40461 656010 391860 398100 530130 377730 359950 372120 488030 349400 585480 69029 663360 381660 421010 525230 384910 378180 363670 466820 1 1 1 1 1 1 1 1 1 1 1 15998000 0 15998000 5662 1919 5284 30330;30331 36200;36201 36201 2 FLIATGERPR Unmodified 1158.6509 0.65094155 1871 Q16881;Q16881-3;Q16881-4;Q16881-5;Q16881-2;Q16881-6;Q16881-7 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 0 0 0 1 By MS/MS By MS/MS 3.93 2.55 2 4 3 1 2 2 6 8 39.844 39.89 2;3 2.8805E-10 10007 20211116_3428_TMUAki_TMT10x_P_F1 195.27 143.27 15328000 24174000 94313 27654000 31519000 30019000 19103000 24486000 24211000 22386000 24295000 14272000 22569000 1533400 28001000 29912000 30311000 20184000 25112000 24410000 21950000 23434000 15 15 8 15 15 15 15 15 15 15 15 9603800 14796000 44900 17171000 24892000 24151000 12753000 15715000 15312000 14431000 15478000 8942100 13815000 1013500 17454000 23563000 23983000 13650000 16365000 15471000 14147000 14926000 7 7 2 7 7 7 7 7 7 7 7 5724300 9377300 49413 10483000 6626500 5868100 6350200 8771000 8898800 7955600 8817200 5330100 8754100 519930 10547000 6349000 6327900 6534600 8746900 8938600 7803400 8508100 8 8 6 8 8 8 8 8 8 8 8 6788600000 4160900000 2627700000 5663 1871 5285 30332;30333;30334;30335;30336;30337;30338;30339;30340;30341;30342;30343;30344;30345 36202;36203;36204;36205;36206;36207;36208;36209;36210;36211;36212;36213;36214;36215;36216 36202 15 FLICTDVAAR Unmodified 1164.5961 0.59612879 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 By MS/MS By MS/MS 5.15 2.03 1 2 2 2 2 2 2 6 7 58.269 58.334 2 2.2652E-25 17237 20211116_3445_TMUAki_TMT10x_S_F6 266.95 223.7 159150000 265600000 1576500 266950000 186170000 219520000 157130000 158370000 139950000 146340000 187680000 148190000 247840000 14429000 271530000 177840000 225190000 160370000 163740000 144820000 143410000 179570000 15 15 8 15 15 15 15 15 15 15 15 71976000 117860000 1296400 120280000 90353000 137710000 81713000 76409000 67169000 69584000 85077000 67026000 109980000 7356300 122790000 86491000 137840000 82886000 80577000 69605000 68240000 81517000 7 7 5 7 7 7 7 7 7 7 7 87170000 147750000 280070 146670000 95820000 81811000 75419000 81960000 72780000 76752000 102600000 81161000 137860000 7072500 148740000 91346000 87347000 77486000 83168000 75215000 75174000 98050000 8 8 3 8 8 8 8 8 8 8 8 32683000000 15582000000 17101000000 5664 2334 5286 30346;30347;30348;30349;30350;30351;30352;30353;30354;30355;30356;30357;30358 36217;36218;36219;36220;36221;36222;36223;36224;36225;36226;36227;36228;36229;36230;36231;36232 36230 16 FLIDGFPR Unmodified 963.5178 0.51780212 866 P30085;P30085-2;P30085-3 CMPK1 UMP-CMP kinase yes no 0 0 0 0 By MS/MS By MS/MS 5 3.29 2 1 2 3 2 69.541 69.589 2 0.00041049 24064 20211116_3439_TMUAki_TMT10x_S_F1 140.98 103.96 21647000 35541000 13017 31926000 25602000 31195000 26330000 23660000 23756000 24183000 27396000 20154000 33150000 1678900 32814000 24555000 31655000 26590000 24452000 24410000 23597000 26315000 5 5 1 5 5 5 5 5 5 5 5 9934900 15423000 0 14166000 10179000 17917000 11743000 10117000 10810000 10750000 11868000 9249300 14386000 694380 14597000 9790800 17846000 11801000 10699000 11076000 10473000 11416000 2 2 0 2 2 2 2 2 2 2 2 11712000 20118000 13017 17760000 15423000 13278000 14587000 13543000 12947000 13433000 15527000 10905000 18763000 984510 18217000 14764000 13809000 14789000 13753000 13334000 13124000 14899000 3 3 1 3 3 3 3 3 3 3 3 2365400000 1360400000 1005000000 5665 866 5287 30359;30360;30361;30362;30363 36233;36234;36235;36236;36237 36235 5 FLIGLGK Unmodified 746.46906 0.46906101 2187 Q8N1G2 CMTR1 Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 68.485 68.437 2 0.019407 21946 20211116_3431_TMUAki_TMT10x_P_F4 88.627 24.064 10671000 17155000 129600 18406000 14140000 15937000 11969000 11232000 10800000 10574000 13523000 9936900 16012000 1054100 18652000 13512000 16283000 12218000 11638000 11135000 10354000 12961000 2 2 2 2 2 2 2 2 2 2 2 5983800 9637600 101740 10532000 8841700 11739000 7418900 6356300 6310700 5955600 7741400 5572200 8996300 630940 10699000 8448200 11764000 7565400 6722300 6519300 5833000 7423500 1 1 1 1 1 1 1 1 1 1 1 4687400 7517000 27860 7874000 5298500 4198100 4549600 4875600 4489600 4618500 5781400 4364600 7015500 423140 7952600 5063300 4518700 4652100 4915300 4615800 4521200 5537100 1 1 1 1 1 1 1 1 1 1 1 603700000 467850000 135860000 5666 2187 5288 30364;30365 36238;36239 36238 2 FLILPDMLK Oxidation (M) 1104.6253 0.62530365 1355 P62318;P62318-2 SNRPD3 Small nuclear ribonucleoprotein Sm D3 yes no 0 0 1 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 77.991 77.967 2 0.011738 27411 20211116_3439_TMUAki_TMT10x_S_F1 73.248 40.128 27378000 45592000 361730 48719000 31961000 47127000 31684000 35231000 33029000 31129000 35412000 25493000 42554000 2522200 49456000 30651000 47841000 32195000 36298000 33627000 30572000 34087000 4 4 2 4 4 4 4 4 4 4 4 16699000 27552000 361730 30781000 19133000 35529000 19214000 21713000 20605000 18734000 22155000 15551000 25721000 1755700 31244000 18369000 35591000 19529000 22685000 20956000 18420000 21324000 2 2 2 2 2 2 2 2 2 2 2 10679000 18040000 0 17938000 12828000 11598000 12470000 13518000 12423000 12395000 13257000 9942300 16833000 766500 18212000 12281000 12249000 12666000 13614000 12670000 12152000 12763000 2 2 0 2 2 2 2 2 2 2 2 3260400000 1906200000 1354200000 5667 1355 5289 30366;30367;30368;30369 36240;36241;36242;36243 36242 1812 4 FLILPDMLK Unmodified 1088.6304 0.63038903 1355 P62318;P62318-2 SNRPD3 Small nuclear ribonucleoprotein Sm D3 yes no 0 0 0 0 By MS/MS By MS/MS 4.8 2.64 1 2 2 2 3 80.127 80.094 2 2.7329E-05 28273 20211116_3430_TMUAki_TMT10x_P_F3 155.01 103.02 19752000 36125000 47994 36441000 26886000 26006000 25465000 13767000 10026000 14165000 24497000 18390000 33710000 1694500 36997000 25741000 26862000 25427000 14627000 11389000 13818000 23183000 4 4 2 4 4 4 4 4 4 4 4 8700900 16379000 1570 16523000 12251000 17314000 13387000 6577000 4610400 6791800 10896000 8101100 15284000 725820 16858000 11772000 17349000 13248000 7235400 5297400 6624400 10316000 2 2 1 2 2 2 2 2 2 2 2 11051000 19746000 46424 19918000 14635000 8691400 12078000 7189800 5415400 7373700 13601000 10289000 18425000 968680 20139000 13969000 9513000 12179000 7391400 6091300 7193900 12867000 2 2 1 2 2 2 2 2 2 2 2 2860400000 1572000000 1288300000 5668 1355 5289 30370;30371;30372;30373;30374 36244;36245;36246;36247;36248 36244 5 FLINLEGGDIREESSYK Unmodified 1968.9793 0.97927114 2942 Q9NSE4 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 5 1 1 1 1 1 67.245 67.178 3 3.2094E-05 20904 20211116_3445_TMUAki_TMT10x_S_F6 82.755 54.21 5008200 9064200 115680 7510800 6603200 5624100 5793800 7835800 6454800 6299200 6480000 4664000 8452000 545360 7743700 6318100 5895500 5939700 7809300 6538600 6215400 6250200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5008200 9064200 115680 7510800 6603200 5624100 5793800 7835800 6454800 6299200 6480000 4664000 8452000 545360 7743700 6318100 5895500 5939700 7809300 6538600 6215400 6250200 1 1 1 1 1 1 1 1 1 1 1 451630000 0 451630000 5669 2942 5290 30375;30376 36249;36250 36250 2 FLINPELIISR Unmodified 1313.7707 0.77072234 2120 Q86W56;Q86W56-3;Q86W56-2;Q86W56-5;Q86W56-4 PARG Poly(ADP-ribose) glycohydrolase yes no 0 0 0 0 By MS/MS 3 0 1 1 79.046 78.975 2 2.1707E-07 28813 20211116_3441_TMUAki_TMT10x_S_F3 118.6 72.88 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5670 2120 5291 30377 36251 36251 1 FLIPNASQAESK Unmodified 1303.6772 0.67721588 1395 P63104;P63104-2 YWHAZ 14-3-3 protein zeta/delta yes no 0 0 0 0 By MS/MS By MS/MS 6.83 0.986 1 4 3 4 7 5 56.881 57.136 2;3 6.2995E-28 16554 20211116_3447_TMUAki_TMT10x_S_F8 225.93 179.93 64814000 107200000 1523400 129310000 131700000 141870000 81138000 112550000 105330000 96574000 99663000 60357000 100110000 7344400 130540000 125080000 143100000 85695000 115430000 105900000 94977000 96317000 11 11 5 11 11 11 11 11 11 11 11 42687000 69068000 1456100 84361000 114020000 125210000 67229000 73545000 68062000 62971000 64953000 39755000 64505000 5644700 85593000 108220000 123880000 70665000 77066000 69095000 61937000 62754000 7 7 3 7 7 7 7 7 7 7 7 22127000 38130000 67293 44945000 17683000 16660000 13910000 39004000 37269000 33602000 34709000 20601000 35605000 1699700 44947000 16856000 19219000 15030000 38367000 36801000 33040000 33562000 4 4 2 4 4 4 4 4 4 4 4 15643000000 10133000000 5509900000 5671 1395 5292 30378;30379;30380;30381;30382;30383;30384;30385;30386;30387;30388;30389 36252;36253;36254;36255;36256;36257;36258;36259;36260;36261;36262;36263;36264 36264 13 FLITHNPTNATLNK Unmodified 1582.8467 0.84674083 1582;2392 Q12974;Q12974-3;Q12974-4;Q12974-2;Q93096 PTP4A2;PTP4A1 Protein tyrosine phosphatase type IVA 2;Protein tyrosine phosphatase type IVA 1 no no 0 0 0 0 By MS/MS 3 0 1 1 49.582 49.225 3 2.2635E-06 16836 20211116_3441_TMUAki_TMT10x_S_F3 107.99 84.389 1596400 2806200 0 2986800 1283700 1445400 1328600 2054700 2237200 1999400 2255600 1486400 2619200 119710 3011200 1231500 1581300 1373400 2056700 2236900 1955000 2175300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1596400 2806200 0 2986800 1283700 1445400 1328600 2054700 2237200 1999400 2255600 1486400 2619200 119710 3011200 1231500 1581300 1373400 2056700 2236900 1955000 2175300 1 1 0 1 1 1 1 1 1 1 1 234180000 0 234180000 5672 1582;2392 5293 30390 36265 36265 1 FLIVAHDDGR Unmodified 1141.588 0.58800695 1859 Q16658 FSCN1 Fascin yes yes 0 0 0 0 By MS/MS By MS/MS 4.75 1.71 2 2 3 4 2 2 1 8 8 43.853 43.985 2;3 3.2763E-11 11939 20211116_3431_TMUAki_TMT10x_P_F4 202.05 176.49 24317000 38326000 314120 40484000 36096000 35395000 24027000 29039000 27679000 25416000 32886000 22643000 35771000 2400100 41072000 34322000 36229000 25116000 29738000 28184000 24972000 31562000 16 16 11 16 16 16 16 16 16 16 16 11565000 17535000 277210 19240000 23932000 23238000 12803000 13223000 12474000 11585000 15558000 10770000 16369000 1367200 19567000 22682000 23202000 13558000 13901000 12814000 11382000 14913000 7 7 6 7 7 7 7 7 7 7 7 12752000 20791000 36910 21245000 12164000 12157000 11224000 15816000 15206000 13831000 17328000 11874000 19402000 1032900 21505000 11639000 13028000 11558000 15837000 15370000 13590000 16650000 9 9 5 9 9 9 9 9 9 9 9 15035000000 6821400000 8213200000 5673 1859 5294 30391;30392;30393;30394;30395;30396;30397;30398;30399;30400;30401;30402;30403;30404;30405;30406 36266;36267;36268;36269;36270;36271;36272;36273;36274;36275;36276;36277;36278;36279;36280;36281;36282;36283;36284 36268 19 FLKEEVNIAR Unmodified 1217.6768 0.67682195 3111 Q9UH03;Q9UH03-2 SEPT3 Neuronal-specific septin-3 yes no 0 0 0 1 By MS/MS 6 0 1 1 48.288 48.445 3 0.058421 13192 20211116_3445_TMUAki_TMT10x_S_F6 43.613 11.007 1626800 2792700 0 2417900 1986800 1787600 1504000 2919300 2582800 2472800 2686600 1514500 2604500 112560 2483700 1891200 1885400 1584200 2897600 2584000 2433500 2588500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1626800 2792700 0 2417900 1986800 1787600 1504000 2919300 2582800 2472800 2686600 1514500 2604500 112560 2483700 1891200 1885400 1584200 2897600 2584000 2433500 2588500 1 1 0 1 1 1 1 1 1 1 1 83299000 0 83299000 5674 3111 5295 30407 36285 36285 1 FLKPYTLEEQK Unmodified 1394.7446 0.74456717 1225 P54709;P54709-2 ATP1B3 Sodium/potassium-transporting ATPase subunit beta-3 yes no 0 0 0 1 By MS/MS 8 0 1 1 55.166 55.113 3 3.4875E-05 15688 20211116_3447_TMUAki_TMT10x_S_F8 99.011 69.94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5675 1225 5296 30408 36286 36286 1 FLLADNLYCK Unmodified 1255.6271 0.62709457 1318 P61758;P61758-2 VBP1 Prefoldin subunit 3 yes no 0 0 0 0 By MS/MS By MS/MS 5.17 3.02 4 2 2 4 7 5 72.896 72.899 2;3 1.5259E-09 23299 20211116_3428_TMUAki_TMT10x_P_F1 186.25 141.94 90682000 154240000 477130 144670000 111250000 144610000 107270000 98146000 89951000 95053000 113600000 84433000 143890000 7617100 148260000 106560000 146280000 108480000 102040000 93106000 92961000 108850000 14 14 6 14 14 14 14 14 14 14 14 52719000 87497000 79296 81578000 62101000 103700000 65815000 56951000 52370000 54329000 64467000 49084000 81622000 4171500 83972000 59617000 103230000 66149000 60184000 54295000 53169000 61815000 7 7 2 7 7 7 7 7 7 7 7 37963000 66744000 397830 63094000 49150000 40908000 41454000 41195000 37580000 40724000 49131000 35349000 62265000 3445600 64292000 46943000 43050000 42331000 41856000 38811000 39792000 47037000 7 7 4 7 7 7 7 7 7 7 7 12634000000 7394100000 5240400000 5676 1318 5297 30409;30410;30411;30412;30413;30414;30415;30416;30417;30418;30419;30420 36287;36288;36289;36290;36291;36292;36293;36294;36295;36296;36297;36298;36299;36300;36301;36302 36288 16 FLLDHGDVAFAPLGK Unmodified 1598.8457 0.84567819 1817 Q15572;Q15572-2;Q15572-6 TAF1C TATA box-binding protein-associated factor RNA polymerase I subunit C yes no 0 0 0 0 By MS/MS 8 0 1 1 73.826 73.858 3 0.0037996 23878 20211116_3436_TMUAki_TMT10x_P_F8 63.727 32.899 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5677 1817 5298 30421 36303 36303 1 FLLEGQVFRK Unmodified 1235.7026 0.70264277 2162 Q8IY37 DHX37 Probable ATP-dependent RNA helicase DHX37 yes yes 0 0 0 1 By MS/MS 4 0 1 1 60.924 60.798 3 0.013663 19288 20211116_3442_TMUAki_TMT10x_S_F4 63.694 38.12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5678 2162 5299 30422 36304 36304 1 FLLGYQPR Unmodified 992.54435 0.54435122 2047 Q7KZ85;Q7KZ85-2 SUPT6H Transcription elongation factor SPT6 yes no 0 0 0 0 By MS/MS 4 0 1 1 58.78 58.685 2 0.014415 18414 20211116_3442_TMUAki_TMT10x_S_F4 77.984 43.177 4725300 7943300 43764 9667500 4666200 4404200 3680800 5713600 5545200 5455600 6609600 4400100 7418400 431720 9662000 4452100 4840800 3842900 5735400 5597500 5338900 6343100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4725300 7943300 43764 9667500 4666200 4404200 3680800 5713600 5545200 5455600 6609600 4400100 7418400 431720 9662000 4452100 4840800 3842900 5735400 5597500 5338900 6343100 1 1 1 1 1 1 1 1 1 1 1 219560000 0 219560000 5679 2047 5300 30423 36305 36305 1 FLLHEPIVNK Unmodified 1208.6917 0.69174374 100 O00541;O00541-2 PES1 Pescadillo homolog yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 54.129 54.06 3 1.6541E-05 15739 20211116_3436_TMUAki_TMT10x_P_F8 102.07 50.072 5533000 9183600 16266 10180000 4390200 4534800 4754200 5034700 4985100 5248900 7120600 5151800 8573000 445320 10230000 4218800 4979100 4810500 5100200 5137100 5117500 6802900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5533000 9183600 16266 10180000 4390200 4534800 4754200 5034700 4985100 5248900 7120600 5151800 8573000 445320 10230000 4218800 4979100 4810500 5100200 5137100 5117500 6802900 2 2 1 2 2 2 2 2 2 2 2 321450000 0 321450000 5680 100 5301 30424;30425 36306;36307;36308 36306 3 FLLHQETLPEQLLAEK Unmodified 1908.0357 0.03566381 2300 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 0.745 1 2 3 4 2 73.944 73.938 3 1.9032E-15 23283 20211116_3434_TMUAki_TMT10x_P_F6 139.65 102.8 31230000 49916000 139680 44899000 35051000 46092000 33903000 32377000 31188000 34703000 36427000 29074000 46558000 2130400 46177000 33546000 46574000 34366000 33680000 32034000 33797000 34978000 6 6 3 6 6 6 6 6 6 6 6 13401000 19783000 30159 19123000 13055000 26156000 14410000 16176000 15010000 16352000 15641000 12477000 18457000 1078700 19660000 12550000 25988000 14565000 16956000 15266000 15963000 15069000 3 3 2 3 3 3 3 3 3 3 3 17829000 30133000 109520 25777000 21995000 19936000 19493000 16200000 16179000 18351000 20786000 16596000 28101000 1051700 26517000 20996000 20586000 19801000 16724000 16768000 17834000 19909000 3 3 1 3 3 3 3 3 3 3 3 4357500000 2005500000 2352100000 5681 2300 5302 30426;30427;30428;30429;30430;30431 36309;36310;36311;36312;36313;36314;36315 36312 7 FLLLQGLVEK Unmodified 1158.7012 0.70124579 2285 Q8TED0;Q8TED0-2;Q8TED0-3 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 0 0 0 0 By MS/MS 3 0 1 1 79.815 79.742 2 0.0033167 28132 20211116_3430_TMUAki_TMT10x_P_F3 76.572 55.025 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5682 2285 5303 30432 36316 36316 1 FLLQVFTK Unmodified 994.58515 0.5851534 2499 Q96IR7 HPDL 4-hydroxyphenylpyruvate dioxygenase-like protein yes yes 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 43.642 43.715 3 0.1054 11850 20211116_3431_TMUAki_TMT10x_P_F4 27.303 4.4739 2941100 4153100 78398 11293000 202910 2767900 3278600 1240800 1441200 1291900 3078000 2739000 3902000 278550 10889000 276640 3311300 3108000 1340200 1604600 1259600 2918500 1 1 1 1 1 1 1 1 1 1 1 2941100 4153100 78398 11293000 202910 2767900 3278600 1240800 1441200 1291900 3078000 2739000 3902000 278550 10889000 276640 3311300 3108000 1340200 1604600 1259600 2918500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 142540000 142540000 0 5683 2499 5304 30433;30434 36317 36317 1 FLLSLPEHR Unmodified 1110.6186 0.61857879 1750 Q15008;Q15008-4 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 0 0 0 0 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 55.023 55.193 3 8.9281E-05 15742 20211116_3447_TMUAki_TMT10x_S_F8 132.84 113.57 6822400 10429000 42518 12138000 9538000 11593000 7632300 8672600 8431600 8486000 9403900 6352200 9738100 593890 12254000 9097000 11778000 7866100 8959500 8577200 8295500 9041500 6 6 1 6 6 6 6 6 6 6 6 3937400 5840300 0 6901600 6743400 8823700 4907000 5041400 4837300 4728200 5215300 3665900 5453600 344920 6994500 6418300 8785400 5071300 5307200 4937600 4630700 5019300 3 3 0 3 3 3 3 3 3 3 3 2885000 4589100 42518 5236100 2794700 2769000 2725200 3631300 3594300 3757700 4188600 2686300 4284500 248970 5259100 2678600 2992400 2794900 3652300 3639700 3664800 4022200 3 3 1 3 3 3 3 3 3 3 3 3734900000 2401300000 1333600000 5684 1750 5305 30435;30436;30437;30438;30439;30440 36318;36319;36320;36321;36322;36323 36323 6 FLMANGQLVK Oxidation (M) 1135.606 0.6059652 1133;884 P50395;P31150 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha no no 0 0 1 0 By MS/MS By MS/MS 1.4 0.49 3 2 2 3 55.976 55.762 2;3 6.028E-05 16342 20211116_3428_TMUAki_TMT10x_P_F1 134.15 104.68 12565000 21648000 54799 21898000 19978000 21850000 14366000 19452000 19667000 16809000 19014000 11698000 20201000 1062400 22321000 19010000 22208000 15030000 19819000 19753000 16526000 18362000 5 5 2 5 5 5 5 5 5 5 5 5595000 9548000 477.86 10389000 13213000 15363000 8049400 9054000 9098100 7846400 8786900 5209100 8912400 518010 10614000 12536000 15202000 8467300 9487800 9198800 7712900 8486000 2 2 1 2 2 2 2 2 2 2 2 6969900 12100000 54321 11509000 6765900 6487200 6316700 10398000 10569000 8962700 10227000 6489400 11289000 544390 11707000 6474200 7006300 6562400 10331000 10554000 8812600 9876300 3 3 1 3 3 3 3 3 3 3 3 1756500000 1202600000 553930000 5685 1133;884 5306 30441;30442;30443;30444;30445 36324;36325;36326;36327;36328 36324 1058 5 FLMANGQLVK Unmodified 1119.6111 0.61105057 1133;884 P50395;P31150 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha no no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 2 4 3 3 62.753 62.424 2;3 2.9816E-14 21138 20211116_3430_TMUAki_TMT10x_P_F3 231.14 182.58 28165000 51840000 309520 49372000 51952000 57948000 45556000 34186000 25052000 33338000 42836000 26226000 48363000 2822800 50671000 49663000 57970000 45909000 35931000 27015000 32595000 40772000 5 5 4 5 5 5 5 5 5 5 5 14126000 25869000 113190 22554000 31777000 43463000 31788000 19404000 14082000 18582000 22089000 13153000 24126000 1390000 23555000 30468000 42447000 31696000 20918000 15385000 18182000 21061000 2 2 1 2 2 2 2 2 2 2 2 14039000 25971000 196320 26819000 20174000 14485000 13768000 14782000 10971000 14757000 20747000 13073000 24237000 1432800 27115000 19195000 15523000 14214000 15013000 11630000 14413000 19711000 3 3 3 3 3 3 3 3 3 3 3 1500300000 897910000 602360000 5686 1133;884 5306 30446;30447;30448;30449;30450;30451 36329;36330;36331;36332;36333 36330 5 FLNAENAQK Unmodified 1033.5193 0.51925868 1030 P43487;P43487-2 RANBP1 Ran-specific GTPase-activating protein yes no 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 42.918 43.038 2 1.3582E-07 10656 20211116_3434_TMUAki_TMT10x_P_F6 182.98 112.07 10226000 16850000 0 17759000 16568000 12361000 11417000 8837300 10083000 8232200 12659000 9521300 15726000 870450 17973000 15752000 12847000 11809000 9144900 10407000 8064900 12132000 3 3 0 3 3 3 3 3 3 3 3 4121000 6650400 0 7520100 10311000 7628700 5055000 3458000 4172200 3355100 4990200 3837000 6208800 413950 7611900 9753900 7671200 5375000 3723300 4312100 3281000 4788600 1 1 0 1 1 1 1 1 1 1 1 6105400 10199000 0 10239000 6256600 4732600 6361900 5379300 5910400 4877100 7668400 5684300 9517000 456510 10361000 5998400 5175500 6433700 5421600 6094900 4783900 7343000 2 2 0 2 2 2 2 2 2 2 2 956110000 530480000 425630000 5687 1030 5307 30452;30453;30454;30455;30456 36334;36335;36336;36337 36335 4 FLNDTSLPHSCFR Unmodified 1592.7406 0.7405612 245 O43795;O43795-2 MYO1B Unconventional myosin-Ib yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 51.521 51.515 3 0.00094926 14742 20211116_3436_TMUAki_TMT10x_P_F8 74.613 65.723 19329000 34900000 234920 30534000 24992000 33586000 24375000 35050000 29171000 28227000 30169000 17998000 32549000 1843100 31504000 23958000 34059000 24905000 35358000 29502000 27849000 29072000 5 5 4 5 5 5 5 5 5 5 5 8796000 15673000 182200 13350000 12731000 21657000 13185000 16271000 13407000 12908000 13835000 8190800 14616000 896530 13907000 12226000 21429000 13357000 16714000 13645000 12745000 13332000 2 2 1 2 2 2 2 2 2 2 2 10533000 19226000 52716 17185000 12261000 11929000 11190000 18779000 15764000 15319000 16334000 9807400 17933000 946570 17597000 11733000 12630000 11548000 18644000 15858000 15104000 15739000 3 3 3 3 3 3 3 3 3 3 3 593390000 370820000 222570000 5688 245 5308 30457;30458 36338;36339;36340;36341;36342 36339 5 FLNDTTKPVGLLLSER Unmodified 1801.9938 0.993799 3060 Q9P287;Q9P287-2;Q9P287-4;Q9P287-3 BCCIP BRCA2 and CDKN1A-interacting protein yes no 0 0 0 1 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 70.812 70.875 3 3.7453E-29 22475 20211116_3428_TMUAki_TMT10x_P_F1 191.43 174.31 70969000 123030000 346750 115850000 90097000 122840000 91262000 82668000 78084000 78094000 95238000 66080000 114770000 6232400 118800000 86423000 123810000 92102000 85942000 80622000 76459000 91341000 9 9 3 9 9 9 9 9 9 9 9 41747000 70972000 243110 69619000 51409000 91595000 58050000 48109000 46544000 43545000 55365000 38872000 66219000 3763100 71447000 49471000 90978000 58179000 50972000 48167000 42717000 53136000 4 4 2 4 4 4 4 4 4 4 4 29222000 52059000 103640 46232000 38687000 31246000 33212000 34559000 31540000 34548000 39873000 27208000 48554000 2469300 47352000 36952000 32831000 33923000 34970000 32455000 33742000 38206000 5 5 1 5 5 5 5 5 5 5 5 12260000000 7471300000 4788600000 5689 3060 5309 30459;30460;30461;30462;30463;30464 36343;36344;36345;36346;36347;36348;36349;36350;36351 36343 9 FLNRHDLDLICR Unmodified 1570.8038 0.80383016 1334 P62140 PPP1CB Serine/threonine-protein phosphatase PP1-beta catalytic subunit yes yes 0 0 0 1 By MS/MS By MS/MS 7.57 0.495 3 4 4 3 51.01 51.198 3;4 3.0655E-07 16302 20211116_3446_TMUAki_TMT10x_S_F7 128.28 112.39 12049000 19834000 54534 21424000 19178000 21056000 14116000 16015000 14351000 14497000 16791000 11219000 18513000 1048600 21738000 18259000 21360000 14591000 16492000 14676000 14221000 16122000 7 7 3 7 7 7 7 7 7 7 7 7257600 11259000 0 12209000 13193000 16641000 9729700 9685600 8876900 8587000 9718100 6756700 10509000 583790 12455000 12556000 16523000 10024000 10166000 9097800 8431800 9348700 4 4 0 4 4 4 4 4 4 4 4 4791600 8575100 54534 9215100 5985700 4414500 4386400 6329900 5474100 5909800 7072900 4461800 8003900 464800 9283900 5702400 4836400 4566600 6326500 5578100 5789200 6773500 3 3 3 3 3 3 3 3 3 3 3 2930500000 1686800000 1243700000 5690 1334 5310 30465;30466;30467;30468;30469;30470;30471 36352;36353;36354;36355;36356;36357;36358;36359 36357 8 FLPEEEKLTEQER Unmodified 1646.8152 0.81516593 2443 Q96EK5 KIAA1279 KIF1-binding protein yes yes 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 51.921 51.731 3 0.0020737 16751 20211116_3430_TMUAki_TMT10x_P_F3 69.331 50.918 8516300 14701000 218150 14395000 17867000 21237000 12181000 13189000 13559000 10851000 12186000 7931100 13716000 1034500 14809000 17001000 21032000 12695000 13746000 13684000 10694000 11798000 3 3 2 3 3 3 3 3 3 3 3 8516300 14701000 218150 14395000 17867000 21237000 12181000 13189000 13559000 10851000 12186000 7931100 13716000 1034500 14809000 17001000 21032000 12695000 13746000 13684000 10694000 11798000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 501560000 501560000 0 5691 2443 5311 30472;30473 36360;36361;36362 36362 3 FLPGYVGGIQEGAVTPAGVVNK Unmodified 2172.1579 0.15790421 3080 Q9UBM7 DHCR7 7-dehydrocholesterol reductase yes yes 0 0 0 0 By MS/MS 8 0 1 1 76.776 76.785 3 1.7642E-08 25087 20211116_3436_TMUAki_TMT10x_P_F8 100.97 84.281 2691900 4615200 49143 4873900 2931400 5562800 3712000 2985000 2572900 3173000 3607100 2506800 4307500 272330 4964200 2833300 5566600 3689100 3170700 2704000 3091100 3447600 1 1 1 1 1 1 1 1 1 1 1 2691900 4615200 49143 4873900 2931400 5562800 3712000 2985000 2572900 3173000 3607100 2506800 4307500 272330 4964200 2833300 5566600 3689100 3170700 2704000 3091100 3447600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 949430000 949430000 0 5692 3080 5312 30474 36363 36363 1 FLPHKYDVK Unmodified 1145.6233 0.62332982 3135 Q9UIG0;Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B yes no 0 0 0 1 By matching By MS/MS 1.5 0.5 1 1 1 1 42.292 42.311 4 0.0013804 11127 20211116_3440_TMUAki_TMT10x_S_F2 88.496 66.44 666460 1102000 3759.1 1099300 850090 701890 700500 876700 954910 821020 907600 620570 1028200 61329 1115700 811570 743480 726240 880880 958650 804150 877000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 666460 1102000 3759.1 1099300 850090 701890 700500 876700 954910 821020 907600 620570 1028200 61329 1115700 811570 743480 726240 880880 958650 804150 877000 1 1 1 1 1 1 1 1 1 1 1 169480000 135540000 33937000 5693 3135 5313 30475;30476 36364 36364 1 FLPLFDR Unmodified 906.49634 0.49633839 1316 P61604 HSPE1 10 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 2.29 10 15 19 3 2 2 2 9 28 34 54.773 54.711 2 3.3284E-05 24946 20211116_3435_TMUAki_TMT10x_P_F7 201.97 129.83 175250000 276380000 141270 265990000 191220000 251250000 173600000 171970000 166420000 173330000 201230000 163150000 257850000 11994000 271870000 182730000 255080000 176790000 178890000 170860000 169220000 193040000 45 45 12 45 45 45 45 45 45 45 45 110730000 168890000 90844 163940000 109050000 183090000 98261000 106940000 102850000 107570000 122510000 103080000 157570000 7123800 167880000 104160000 183630000 100380000 112590000 105130000 105040000 117570000 22 22 4 22 22 22 22 22 22 22 22 64521000 107490000 50429 102050000 82173000 68159000 75337000 65031000 63576000 65754000 78722000 60070000 100280000 4869800 103990000 78573000 71456000 76411000 66299000 65730000 64189000 75472000 23 23 8 23 23 23 23 23 23 23 23 89265000000 45556000000 43710000000 5694 1316 5314 30477;30478;30479;30480;30481;30482;30483;30484;30485;30486;30487;30488;30489;30490;30491;30492;30493;30494;30495;30496;30497;30498;30499;30500;30501;30502;30503;30504;30505;30506;30507;30508;30509;30510;30511;30512;30513;30514;30515;30516;30517;30518;30519;30520;30521;30522;30523;30524;30525;30526;30527;30528;30529;30530;30531;30532;30533;30534;30535;30536;30537;30538 36365;36366;36367;36368;36369;36370;36371;36372;36373;36374;36375;36376;36377;36378;36379;36380;36381;36382;36383;36384;36385;36386;36387;36388;36389;36390;36391;36392;36393;36394;36395;36396;36397;36398;36399;36400;36401;36402;36403;36404;36405;36406;36407;36408;36409;36410;36411;36412;36413;36414;36415;36416;36417;36418;36419;36420;36421;36422;36423;36424;36425;36426;36427;36428;36429 36390 65 FLPNAPK Unmodified 785.44357 0.44357454 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 By MS/MS By MS/MS 4.38 3.16 3 1 2 2 4 4 48.232 48.172 2;3 0.0035154 12816 20211116_3447_TMUAki_TMT10x_S_F8 118.06 34.827 42553000 67727000 107370 65421000 50190000 52123000 40594000 44711000 30727000 42250000 43045000 39620000 63188000 3396600 66705000 47868000 53753000 41373000 45759000 32128000 41365000 41143000 5 5 2 5 5 5 5 5 5 5 5 27105000 42516000 36731 40470000 36296000 41681000 27585000 28154000 19634000 25643000 27080000 25235000 39664000 2165900 41449000 34570000 42083000 28190000 29232000 20587000 25148000 25893000 3 3 1 3 3 3 3 3 3 3 3 15449000 25212000 70639 24951000 13894000 10442000 13010000 16557000 11093000 16607000 15965000 14384000 23524000 1230700 25256000 13298000 11670000 13183000 16527000 11542000 16217000 15250000 2 2 1 2 2 2 2 2 2 2 2 5649900000 2853000000 2796900000 5695 2334 5315 30539;30540;30541;30542;30543;30544;30545;30546 36430;36431;36432;36433;36434;36435;36436;36437;36438 36438 9 FLPRPIR Unmodified 897.55486 0.55485632 1564 Q12789;Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 yes no 0 0 0 1 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 38.252 38.337 3 0.0085166 8743 20211116_3445_TMUAki_TMT10x_S_F6 92.191 65.326 2572600 3859900 790.02 4368600 4546200 4379100 2955200 2453700 2736300 3122300 3192500 2395000 3603600 194750 4420900 4316100 4417200 3074000 2611900 2809500 3021900 3065600 4 4 1 4 4 4 4 4 4 4 4 1923000 2844700 0 3246100 3940700 3821000 2271100 1900600 2127100 2179100 2436800 1790200 2655900 144320 3291800 3733800 3814000 2386500 2037600 2181200 2116700 2341100 2 2 0 2 2 2 2 2 2 2 2 649620 1015200 790.02 1122500 605440 558080 684120 553090 609270 943250 755660 604840 947640 50437 1129100 582320 603240 687500 574280 628300 905150 724430 2 2 1 2 2 2 2 2 2 2 2 156230000 103930000 52295000 5696 1564 5316 30547;30548;30549;30550;30551;30552 36439;36440;36441;36442 36442 4 FLPRPPGEK Unmodified 1039.5815 0.581465 3011 Q9NY12;Q9NY12-2 GAR1 H/ACA ribonucleoprotein complex subunit 1 yes no 0 0 0 1 By MS/MS By MS/MS 4 3.29 2 1 2 2 3 42.166 42.189 3 0.0048785 11026 20211116_3440_TMUAki_TMT10x_S_F2 71.349 41.095 5282400 7946000 71985 8428700 9853400 9275800 5899400 6573500 7131700 6509200 7437200 4918800 7416300 543310 8577200 9351100 9336600 6228900 6818000 7212200 6359900 7164900 4 4 3 4 4 4 4 4 4 4 4 3534100 5234000 53561 5590600 8162700 7708000 4109900 4401300 4794100 4445000 4920200 3290800 4885200 382000 5709800 7726400 7647500 4402000 4643100 4851700 4339400 4742500 2 2 1 2 2 2 2 2 2 2 2 1748300 2712000 18424 2838100 1690700 1567700 1789500 2172300 2337600 2064200 2517000 1628000 2531000 161310 2867400 1624700 1689000 1826900 2174900 2360500 2020500 2422500 2 2 2 2 2 2 2 2 2 2 2 674200000 401930000 272270000 5697 3011 5317 30553;30554;30555;30556;30557 36443;36444;36445;36446 36446 4 FLPRPVFTK Unmodified 1103.6492 0.64915064 839 P28161 GSTM2 Glutathione S-transferase Mu 2 yes yes 0 0 0 1 By MS/MS By MS/MS 6 0.707 1 2 1 2 2 54.313 54.588 3 0.00066069 15738 20211116_3445_TMUAki_TMT10x_S_F6 100.58 65.043 18307000 30642000 263690 34892000 24295000 20913000 17909000 25000000 21847000 22279000 26878000 17047000 28608000 1830600 35086000 23149000 22259000 18621000 25130000 22232000 21871000 25773000 4 4 3 4 4 4 4 4 4 4 4 3167500 4846300 429.37 5523100 5794200 6836900 3754300 3996000 3893500 3844700 3899200 2949200 4524600 299790 5606300 5504500 6820100 3919100 4201700 3955100 3761200 3761300 1 1 1 1 1 1 1 1 1 1 1 15139000 25796000 263260 29369000 18501000 14076000 14154000 21004000 17953000 18434000 22979000 14098000 24084000 1530800 29480000 17645000 15439000 14702000 20929000 18277000 18109000 22011000 3 3 2 3 3 3 3 3 3 3 3 955510000 327030000 628470000 5698 839 5318 30558;30559;30560;30561 36447;36448;36449;36450;36451 36449 5 FLPSELRDEH Unmodified 1241.6041 0.60405094 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 45.236 45.081 3 1.5993E-08 13955 20211116_3430_TMUAki_TMT10x_P_F3 164.31 151.1 3027000 4719000 64045 5480400 5619800 5555300 3586900 4438000 4453300 3787700 4400800 2818800 4406200 335850 5538200 5340500 5629600 3771500 4549200 4490700 3726100 4246900 3 3 2 3 3 3 3 3 3 3 3 1946800 3027500 64045 3560600 4707200 4745000 2690100 2819900 2846300 2390400 2743000 1813200 2827000 259750 3612500 4466600 4717600 2839000 2951400 2885200 2352300 2649200 2 2 2 2 2 2 2 2 2 2 2 1080200 1691500 0 1919800 912610 810280 896800 1618100 1607000 1397400 1657900 1005700 1579200 76100 1925800 873930 912040 932470 1597800 1605500 1373800 1597700 1 1 0 1 1 1 1 1 1 1 1 526280000 363400000 162880000 5699 3293 5319 30562;30563;30564;30565;30566;30567 36452;36453;36454;36455;36456 36453 5 FLPSPVVIK Unmodified 998.61645 0.61645353 1657 Q13618;Q13618-3;Q13618-2 CUL3 Cullin-3 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 69.776 69.506 2 2.3431E-05 25085 20211116_3441_TMUAki_TMT10x_S_F3 141.39 100.36 2464200 4244700 118590 4011400 3369000 5370600 3245200 3313000 3040200 2908500 3612600 2295300 3959800 327500 4129100 3234400 5341100 3291800 3460200 3122200 2857200 3467200 1 1 1 1 1 1 1 1 1 1 1 2464200 4244700 118590 4011400 3369000 5370600 3245200 3313000 3040200 2908500 3612600 2295300 3959800 327500 4129100 3234400 5341100 3291800 3460200 3122200 2857200 3467200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 233070000 233070000 0 5700 1657 5320 30568;30569 36457;36458 36458 2 FLQDYFDGNLK Unmodified 1358.6507 0.65066678 868 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 By MS/MS By MS/MS 6.57 1.18 2 1 2 2 4 3 77.857 77.886 2;3 2.5339E-14 27382 20211116_3446_TMUAki_TMT10x_S_F7 185.96 136.54 29922000 49682000 17194 53017000 29127000 28838000 31610000 19045000 20491000 23192000 30689000 27859000 46371000 2270400 53489000 27978000 30650000 31589000 19982000 21694000 22479000 29289000 4 4 1 4 4 4 4 4 4 4 4 4316900 6993700 0 6927900 3968700 6693800 4458600 3839800 3735400 4039100 4223700 4019200 6525600 317990 7068700 3815400 6769500 4474500 4054000 3849100 3936600 4059300 1 1 0 1 1 1 1 1 1 1 1 25605000 42689000 17194 46090000 25159000 22144000 27151000 15205000 16755000 19152000 26465000 23839000 39846000 1952400 46421000 24163000 23880000 27115000 15928000 17845000 18543000 25229000 3 3 1 3 3 3 3 3 3 3 3 4188600000 935730000 3252900000 5701 868 5321 30570;30571;30572;30573;30574;30575;30576 36459;36460;36461;36462;36463;36464;36465 36464 7 FLQDYFDGNLKR Unmodified 1514.7518 0.75177781 868 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 1 By MS/MS By MS/MS 5.25 2.92 3 1 2 2 4 5 7 66.732 66.779 2;3 9.6344E-30 20441 20211116_3447_TMUAki_TMT10x_S_F8 272.94 223.52 138330000 241040000 418210 216190000 205960000 244630000 182560000 206140000 190550000 193070000 206780000 128800000 224820000 11779000 222730000 196860000 246590000 186650000 211140000 194080000 189100000 198970000 17 17 6 17 17 17 17 17 17 17 17 58601000 101280000 110370 90357000 86085000 143030000 85997000 89245000 85214000 84380000 86285000 54560000 94466000 4774400 93738000 82509000 141250000 87210000 93307000 86763000 82610000 83203000 6 6 2 6 6 6 6 6 6 6 6 79732000 139760000 307840 125830000 119880000 101600000 96566000 116890000 105340000 108690000 120490000 74237000 130360000 7004100 128990000 114350000 105340000 99442000 117830000 107320000 106490000 115770000 11 11 4 11 11 11 11 11 11 11 11 29326000000 16074000000 13253000000 5702 868 5322 30577;30578;30579;30580;30581;30582;30583;30584;30585;30586;30587;30588 36466;36467;36468;36469;36470;36471;36472;36473;36474;36475;36476;36477;36478;36479;36480;36481;36482;36483 36482 18 FLQEFYQDDELGKK Unmodified 1758.8465 0.84646606 913 P33993;P33993-2 MCM7 DNA replication licensing factor MCM7 yes no 0 0 0 1 By MS/MS By MS/MS 4.57 1.64 2 2 3 2 3 2 8 6 68.937 68.903 3;4 4.7738E-33 22108 20211116_3431_TMUAki_TMT10x_P_F4 222.25 176.34 99305000 169950000 1129100 163340000 117320000 165740000 114580000 110710000 111260000 111960000 124380000 92468000 158550000 9127400 167130000 112460000 167460000 116260000 115380000 113800000 109290000 119580000 16 16 10 16 16 16 16 16 16 16 16 62994000 106280000 821430 103200000 75996000 128750000 78307000 70209000 70738000 71408000 77056000 58658000 99155000 5907200 105880000 72959000 128270000 79075000 74374000 72519000 69691000 74137000 10 10 6 10 10 10 10 10 10 10 10 36311000 63671000 307630 60138000 41322000 36987000 36273000 40505000 40519000 40547000 47323000 33810000 59399000 3220200 61254000 39503000 39187000 37188000 41006000 41277000 39599000 45440000 6 6 4 6 6 6 6 6 6 6 6 13342000000 6914700000 6427400000 5703 913 5323 30589;30590;30591;30592;30593;30594;30595;30596;30597;30598;30599;30600;30601;30602 36484;36485;36486;36487;36488;36489;36490;36491;36492;36493;36494;36495;36496;36497;36498;36499 36486 16 FLQEHLAPK Unmodified 1081.592 0.59202969 816 P26440 IVD Isovaleryl-CoA dehydrogenase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 44.035 44.55 3 0.0082528 13632 20211116_3446_TMUAki_TMT10x_S_F7 61.56 45.988 7575700 9824100 47120 11835000 13603000 11064000 7567800 9235900 9554000 7510000 12125000 7053800 9174400 724910 11920000 12892000 11278000 8053400 9431000 9723900 7405700 11617000 4 4 3 4 4 4 4 4 4 4 4 5315100 6199200 11734 7718300 11531000 9114700 5550000 5996300 6173700 4912300 8724900 4948700 5790200 507150 7787600 10905000 9129300 5961600 6221500 6343900 4842300 8337600 2 2 1 2 2 2 2 2 2 2 2 2260700 3624900 35386 4116400 2071900 1949200 2017900 3239600 3380300 2597700 3399700 2105200 3384200 217760 4132200 1987400 2148400 2091800 3209500 3379900 2563500 3278900 2 2 2 2 2 2 2 2 2 2 2 282920000 214560000 68354000 5704 816 5324 30603;30604 36500;36501;36502;36503 36502 4 FLQGDSFLNEDLNQLIK Unmodified 1993.0157 0.015656649 2293 Q8WTT2 NOC3L Nucleolar complex protein 3 homolog yes yes 0 0 0 0 By MS/MS 5 1 1 1 2 80.272 80.282 3 0.067377 25863 20211116_3434_TMUAki_TMT10x_P_F6 36.451 18.962 1773600 2780900 6086.2 2638900 1567200 2953000 2044700 1709600 1598500 1737000 2208100 1651500 2594400 149830 2706800 1515100 2961000 2035200 1801800 1667400 1695300 2111200 1 1 1 1 1 1 1 1 1 1 1 1773600 2780900 6086.2 2638900 1567200 2953000 2044700 1709600 1598500 1737000 2208100 1651500 2594400 149830 2706800 1515100 2961000 2035200 1801800 1667400 1695300 2111200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 852780000 852780000 0 5705 2293 5325 30605;30606 36504;36505 36505 2 FLQPHQR Unmodified 924.49298 0.49298435 2980 Q9NVU7;Q9NVU7-2 SDAD1 Protein SDA1 homolog yes no 0 0 0 0 By matching By MS/MS 1 0 2 1 1 29.585 29.618 3 0.020971 7789 20211116_3439_TMUAki_TMT10x_S_F1 65.672 48.896 219890 328280 0 353200 262160 170200 249370 195970 190320 185260 232610 204720 306410 16993 355830 250930 185250 251790 197630 197710 181380 223080 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 219890 328280 0 353200 262160 170200 249370 195970 190320 185260 232610 204720 306410 16993 355830 250930 185250 251790 197630 197710 181380 223080 1 1 0 1 1 1 1 1 1 1 1 6493600 2608000 3885600 5706 2980 5326 30607;30608 36506 36506 1 FLQPVHK Unmodified 867.49667 0.49667274 1809 Q15437 SEC23B Protein transport protein Sec23B yes yes 0 0 0 0 By matching By MS/MS 1.33 0.471 2 1 1 2 40.291 40.222 3 0.0068589 12066 20211116_3439_TMUAki_TMT10x_S_F1 89.673 54.866 382650 635900 0 608730 376800 337640 403360 433370 477680 432170 481770 356260 593260 28193 618870 361730 362830 410060 435760 482850 422130 464620 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 382650 635900 0 608730 376800 337640 403360 433370 477680 432170 481770 356260 593260 28193 618870 361730 362830 410060 435760 482850 422130 464620 1 1 0 1 1 1 1 1 1 1 1 98691000 75393000 23298000 5707 1809 5327 30609;30610;30611 36507;36508 36507 2 FLRDFTENPCLR Unmodified 1566.7613 0.76129664 89 O00451;O00451-3;O00451-2 GFRA2 GDNF family receptor alpha-2 yes no 0 0 0 1 By MS/MS By MS/MS 6.2 2.64 1 2 2 2 3 56.597 56.81 3 2.9246E-20 16367 20211116_3447_TMUAki_TMT10x_S_F8 235.31 202.31 31183000 48882000 223450 53132000 41233000 39179000 30590000 36809000 35863000 33241000 39682000 29034000 45628000 2671600 53695000 39265000 40720000 31749000 37438000 36389000 32612000 38161000 6 6 4 6 6 6 6 6 6 6 6 10496000 16618000 52728 17528000 15412000 20043000 12795000 12961000 12160000 11756000 13234000 9772700 15509000 925640 17855000 14712000 20105000 13096000 13500000 12436000 11531000 12733000 2 2 1 2 2 2 2 2 2 2 2 20687000 32265000 170720 35604000 25820000 19135000 17795000 23848000 23703000 21485000 26448000 19262000 30119000 1745900 35840000 24553000 20615000 18653000 23938000 23952000 21080000 25429000 4 4 3 4 4 4 4 4 4 4 4 4530700000 2281800000 2248800000 5708 89 5328 30612;30613;30614;30615;30616 36509;36510;36511;36512;36513;36514 36514 6 FLRENPYYDSR Unmodified 1458.6892 0.68917755 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 1 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 41.775 42.021 3 6.6023E-16 10205 20211116_3434_TMUAki_TMT10x_P_F6 201.38 165.73 10153000 16179000 98326 19282000 20064000 20195000 11878000 17370000 17660000 13544000 15735000 9454100 15108000 1052800 19465000 19037000 20454000 12655000 17688000 17644000 13386000 15238000 8 8 6 8 8 8 8 8 8 8 8 6301400 9790500 49314 11882000 16182000 17205000 9180400 11124000 11221000 8571300 9611200 5867400 9143400 687330 12053000 15341000 17063000 9741300 11540000 11269000 8476300 9321400 4 4 2 4 4 4 4 4 4 4 4 3851700 6388700 49012 7399600 3882100 2990100 2697200 6246200 6438700 4972900 6123300 3586700 5965100 365430 7411500 3695500 3391300 2913700 6148200 6375300 4909300 5916700 4 4 4 4 4 4 4 4 4 4 4 1718200000 984490000 733690000 5709 1471 5329 30617;30618;30619;30620;30621;30622 36515;36516;36517;36518;36519;36520;36521;36522 36517 8 FLREWVESMGGKVPPATQK Oxidation (M) 2175.1147 0.11465919 1137 P50502;Q8NFI4 ST13;ST13P5 Hsc70-interacting protein;Putative protein FAM10A5 yes no 0 0 1 2 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 58.996 58.69 4 9.8969E-05 19647 20211116_3430_TMUAki_TMT10x_P_F3 74.793 64.005 16356000 26131000 185040 26434000 20640000 24309000 18444000 16028000 13497000 15556000 20273000 15230000 24384000 1552500 26914000 19744000 24710000 18670000 16700000 14188000 15212000 19347000 4 4 2 4 4 4 4 4 4 4 4 10191000 15681000 101550 15804000 14255000 19529000 12333000 10289000 8570000 9694300 12684000 9489500 14632000 975030 16170000 13625000 19458000 12494000 10910000 9029100 9492500 12108000 2 2 1 2 2 2 2 2 2 2 2 6165100 10450000 83489 10630000 6384700 4780300 6110700 5738700 4927300 5861700 7589000 5740800 9751400 577440 10744000 6119100 5252200 6176000 5790000 5158900 5719700 7238400 2 2 1 2 2 2 2 2 2 2 2 1678900000 1273000000 405840000 5710 1137 5330 30623;30624;30625 36523;36524;36525 36523 1500 3 FLRPEDPTRPSR Unmodified 1469.7739 0.77391024 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 2 By MS/MS By MS/MS 1 0 4 2 2 32.838 32.843 3;4 2.4E-19 7054 20211116_3428_TMUAki_TMT10x_P_F1 222.73 173.58 1576700 2586500 9402.1 2996900 3113300 2609800 1836100 2108000 2354700 1907500 2429700 1468000 2415100 151370 3022500 2953000 2671300 1945300 2162600 2375400 1871200 2341500 4 4 2 4 4 4 4 4 4 4 4 799740 1351600 6356.5 1551000 2344500 1894700 1051600 1098200 1211900 1018900 1251700 744660 1261900 90229 1573300 2215700 1891100 1139200 1154400 1227300 998400 1206200 2 2 1 2 2 2 2 2 2 2 2 776920 1235000 3045.5 1445900 768790 715110 784550 1009800 1142700 888540 1178000 723360 1153100 61141 1449200 737340 780200 806070 1008200 1148100 872790 1135300 2 2 1 2 2 2 2 2 2 2 2 1060500000 547480000 513050000 5711 157 5331 30626;30627;30628;30629 36526;36527;36528;36529 36526 4 FLRPHYGK Unmodified 1016.5556 0.55558461 1609 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes yes 0 0 0 1 By matching By MS/MS 4.5 0.5 1 1 1 1 33.6 33.701 4 0.0097973 6905 20211116_3444_TMUAki_TMT10x_S_F5 76.899 61.27 193370 287310 1229.2 352650 127180 166070 219340 102030 164980 171020 208810 180060 268340 16250 352360 124340 179250 215990 109040 171770 164190 200080 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 193370 287310 1229.2 352650 127180 166070 219340 102030 164980 171020 208810 180060 268340 16250 352360 124340 179250 215990 109040 171770 164190 200080 1 1 1 1 1 1 1 1 1 1 1 55512000 45310000 10202000 5712 1609 5332 30630;30631 36530 36530 1 FLSDPQVHTVLVER Unmodified 1638.873 0.87295558 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By matching By MS/MS 5.33 0.471 2 1 1 2 53.698 53.86 3 8.3504E-07 15422 20211116_3445_TMUAki_TMT10x_S_F6 116.58 94.711 6178200 10494000 81131 10076000 9376700 5764600 5618800 9816600 8689200 8458700 8829300 5753100 9790200 632620 10245000 8901200 6229600 5991000 9735700 8710400 8317200 8513000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6178200 10494000 81131 10076000 9376700 5764600 5618800 9816600 8689200 8458700 8829300 5753100 9790200 632620 10245000 8901200 6229600 5991000 9735700 8710400 8317200 8513000 2 2 2 2 2 2 2 2 2 2 2 721410000 196280000 525130000 5713 1695 5333 30632;30633;30634 36531;36532 36532 2 FLSLPEVR Unmodified 959.54402 0.54401687 2797 Q9H3G5 CPVL Probable serine carboxypeptidase CPVL yes yes 0 0 0 0 By MS/MS 8 0 1 1 64.222 64.197 2 0.0064163 19354 20211116_3447_TMUAki_TMT10x_S_F8 86.095 63.204 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5714 2797 5334 30635 36533 36533 1 FLSLPQPER Unmodified 1085.5869 0.58694431 1488 Q01826;Q01826-2 SATB1 DNA-binding protein SATB1 yes no 0 0 0 0 By MS/MS 7 0 1 1 57.293 57.815 2 0.046528 19006 20211116_3446_TMUAki_TMT10x_S_F7 62.969 35.715 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5715 1488 5335 30636 36534 36534 1 FLSPEFIPR Unmodified 1104.5968 0.59678072 1095 P49406 MRPL19 39S ribosomal protein L19, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 68.364 68.301 2 0.00084745 21029 20211116_3447_TMUAki_TMT10x_S_F8 110.22 72.66 17840000 30000000 235390 27847000 18890000 19192000 18128000 9630600 8718800 9357600 17478000 16612000 27985000 1580900 28431000 18099000 19871000 18137000 10266000 9592500 9150400 16589000 3 3 1 3 3 3 3 3 3 3 3 7797100 12590000 235390 12118000 6055400 8629900 6387200 4275300 3690300 3744300 7407800 7261700 11746000 841420 12343000 5828800 8908900 6378000 4550700 4004200 3678700 7031000 1 1 1 1 1 1 1 1 1 1 1 10043000 17409000 0 15729000 12835000 10562000 11741000 5355300 5028500 5613300 10070000 9350000 16239000 739490 16087000 12270000 10962000 11759000 5715400 5588300 5471600 9558300 2 2 0 2 2 2 2 2 2 2 2 1124600000 345140000 779470000 5716 1095 5336 30637;30638;30639 36535;36536;36537 36537 3 FLSPQDTFEALKR Unmodified 1550.8093 0.80929269 2949 Q9NTZ6 RBM12 RNA-binding protein 12 yes yes 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 67.36 67.177 3 9.9943E-23 20955 20211116_3428_TMUAki_TMT10x_P_F1 206.18 161.64 49191000 80694000 431030 75957000 58217000 78035000 55648000 63524000 57239000 60666000 63122000 45804000 75278000 4496200 77854000 55776000 79042000 56630000 65233000 58370000 59367000 60710000 8 8 5 8 8 8 8 8 8 8 8 22172000 34729000 124930 32850000 24975000 47632000 26808000 28568000 26072000 27453000 28083000 20645000 32399000 1973300 33867000 24000000 47184000 27074000 29975000 26627000 26858000 27029000 3 3 1 3 3 3 3 3 3 3 3 27019000 45965000 306100 43106000 33242000 30402000 28840000 34956000 31167000 33213000 35039000 25159000 42880000 2522900 43988000 31776000 31858000 29556000 35258000 31743000 32509000 33681000 5 5 4 5 5 5 5 5 5 5 5 4717200000 3050500000 1666700000 5717 2949 5337 30640;30641;30642;30643 36538;36539;36540;36541;36542;36543;36544;36545 36538 8 FLSPVVPNYDNVHPNYHK Unmodified 2139.0538 0.05377349 3224 Q9Y262;Q9Y262-2 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 54.136 54.072 4 4.7964E-12 17746 20211116_3439_TMUAki_TMT10x_S_F1 128.9 113.26 53483000 91760000 1034900 103160000 66588000 96604000 63273000 63238000 65092000 60245000 67501000 49805000 85664000 5475800 104340000 63820000 98068000 64410000 65890000 66226000 58962000 65041000 11 11 9 11 11 11 11 11 11 11 11 40940000 70026000 909400 80681000 52950000 84894000 49968000 49639000 50465000 46801000 51550000 38126000 65382000 4357900 81618000 50748000 85433000 50856000 52164000 51356000 45825000 49695000 8 8 7 8 8 8 8 8 8 8 8 12542000 21733000 125470 22484000 13638000 11709000 13305000 13599000 14628000 13445000 15951000 11679000 20282000 1118000 22723000 13072000 12636000 13554000 13726000 14870000 13137000 15347000 3 3 2 3 3 3 3 3 3 3 3 3610900000 2439000000 1171900000 5718 3224 5338 30644;30645;30646;30647 36546;36547;36548;36549;36550;36551;36552;36553;36554;36555;36556 36554 11 FLSPVVPNYDNVHPNYHKEPFLQQLK Unmodified 3122.5978 0.59779036 3224 Q9Y262;Q9Y262-2 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 0 0 0 1 By MS/MS By matching 2.67 0.471 1 2 2 1 65.913 65.559 5 2.3674E-30 21824 20211116_3429_TMUAki_TMT10x_P_F2 169.9 158.05 29104000 55268000 484250 41111000 36224000 74975000 46375000 40172000 37622000 41449000 34298000 27102000 51518000 2946600 43446000 35017000 73508000 46238000 42639000 38539000 40428000 33189000 5 5 4 5 5 5 5 5 5 5 5 29104000 55268000 484250 41111000 36224000 74975000 46375000 40172000 37622000 41449000 34298000 27102000 51518000 2946600 43446000 35017000 73508000 46238000 42639000 38539000 40428000 33189000 5 5 4 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8369100000 6114200000 2254900000 5719 3224 5339 30648;30649;30650 36557;36558;36559;36560;36561 36558 5 FLSQIESDRLALLQVR Unmodified 1887.0578 0.057796236 730 P19367;P19367-4;P19367-2;P19367-3;Q2TB90 HK1;HKDC1 Hexokinase-1;Putative hexokinase HKDC1 yes no 0 0 0 1 By MS/MS By MS/MS 2.8 2.64 2 2 1 3 2 76.151 76.124 3 6.5363E-58 26202 20211116_3429_TMUAki_TMT10x_P_F2 252.1 225.75 16425000 27590000 436340 25492000 21241000 24606000 20467000 19849000 17893000 19137000 21936000 15296000 25737000 1798900 26141000 20372000 25014000 20721000 20400000 18459000 18719000 21036000 7 7 5 7 7 7 7 7 7 7 7 7185200 11876000 109530 10576000 7407400 13593000 8668600 8480400 7336200 8031400 9112900 6690600 11077000 663900 10926000 7138500 13547000 8685700 8866800 7584700 7862300 8735900 3 3 1 3 3 3 3 3 3 3 3 9239800 15714000 326820 14916000 13834000 11012000 11798000 11368000 10557000 11105000 12824000 8605600 14660000 1135000 15215000 13233000 11467000 12036000 11533000 10875000 10857000 12300000 4 4 4 4 4 4 4 4 4 4 4 2342000000 1038500000 1303500000 5720 730 5340 30651;30652;30653;30654;30655 36562;36563;36564;36565;36566;36567;36568;36569 36564 8 FLSQLLER Unmodified 1004.5655 0.56548059 2382 Q92974;Q92974-2;Q92974-3 ARHGEF2 Rho guanine nucleotide exchange factor 2 yes no 0 0 0 0 By MS/MS 8 0 1 1 70.518 70.6 2 0.088187 22529 20211116_3436_TMUAki_TMT10x_P_F8 59.052 20.901 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5721 2382 5341 30656 36570 36570 1 FLSQPFQVAEVFTGHMGK Oxidation (M) 2037.9982 0.99823245 518 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 2.69 1.53 2 6 7 1 5 11 72.406 72.335 2;3;4 5.1277E-21 28092 20211116_3441_TMUAki_TMT10x_S_F3 160.45 150.11 134000000 222690000 186030 182630000 146830000 241500000 156190000 190420000 186410000 190450000 179540000 124750000 207640000 8040100 190030000 140920000 241250000 158880000 196180000 188080000 186000000 173410000 19 19 6 19 19 19 19 19 19 19 19 80037000 127560000 101380 105790000 69392000 163860000 87653000 107320000 105860000 110780000 103660000 74514000 118940000 4128900 110330000 66924000 162070000 88519000 112070000 106820000 108050000 100060000 8 8 1 8 8 8 8 8 8 8 8 53960000 95132000 84649 76843000 77437000 77646000 68541000 83096000 80554000 79668000 75884000 50238000 88700000 3911300 79697000 73994000 79174000 70361000 84109000 81258000 77949000 73347000 11 11 5 11 11 11 11 11 11 11 11 56236000000 29489000000 26746000000 5722 518 5342 30657;30658;30659;30660;30661;30662;30663;30664;30665;30666;30667;30668;30669;30670;30671;30672 36571;36572;36573;36574;36575;36576;36577;36578;36579;36580;36581;36582;36583;36584;36585;36586;36587;36588;36589;36590 36587 420 20 FLSQPFQVAEVFTGHMGK Unmodified 2022.0033 0.003317824 518 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.845 1 2 7 4 8 6 81.031 80.994 3;4 8.144E-41 28672 20211116_3441_TMUAki_TMT10x_S_F3 210.09 186.05 134590000 209930000 559160 207470000 157950000 134390000 165060000 51025000 39568000 66991000 128500000 125310000 195880000 10586000 210740000 151570000 139550000 163170000 56564000 48901000 64769000 121210000 13 13 5 13 13 13 13 13 13 13 13 55199000 84111000 223490 82608000 53131000 69038000 63777000 23785000 19448000 31001000 53675000 51395000 78479000 4461800 84177000 51207000 70151000 62763000 26683000 22939000 29980000 50719000 8 8 3 8 8 8 8 8 8 8 8 79390000 125820000 335670 124860000 104820000 65357000 101290000 27240000 20121000 35990000 74825000 73913000 117400000 6124600 126560000 100360000 69395000 100410000 29881000 25962000 34789000 70487000 5 5 2 5 5 5 5 5 5 5 5 25119000000 10491000000 14628000000 5723 518 5342 30673;30674;30675;30676;30677;30678;30679;30680;30681;30682;30683;30684;30685;30686 36591;36592;36593;36594;36595;36596;36597;36598;36599;36600;36601;36602;36603;36604;36605;36606;36607 36603 17 FLSVSFMSQLLSSNNFLK Unmodified 2061.0605 0.060498352 2811 Q9H583 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 5.13 1.67 5 3 2 5 11 4 88.69 88.664 3 0.078682 31657 20211116_3445_TMUAki_TMT10x_S_F6 33.307 12.247 1272000 2212400 10402 1902100 1492400 2400700 1600500 1667900 1581200 1631700 1758200 1184400 2063200 110410 1969800 1433800 2398500 1617200 1731700 1615700 1595100 1690600 2 2 1 2 2 2 2 2 2 2 2 926220 1539800 0 1330900 963250 1933800 1141200 1201600 1111800 1161400 1236000 862340 1436100 69478 1381500 927580 1916400 1147400 1257500 1136700 1135900 1188500 1 1 0 1 1 1 1 1 1 1 1 345790 672560 10402 571210 529150 466910 459250 466270 469400 470300 522180 322040 627190 40930 588330 506250 482070 469810 474230 478960 459160 502090 1 1 1 1 1 1 1 1 1 1 1 97987000 41817000 56171000 5724 2811 5343 30687;30688;30689;30690;30691;30692;30693;30694;30695;30696;30697;30698;30699;30700;30701 36608;36609;36610;36611;36612;36613;36614;36615;36616;36617;36618;36619;36620;36621;36622 36620 15 FLTALAQDGVINEEALSVTELDR Unmodified 2503.2806 0.28059812 2301 Q8WUM4;Q8WUM4-2 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 80.845 80.806 3 2.0239E-07 26848 20211116_3440_TMUAki_TMT10x_S_F2 86.832 70.71 3103000 5198400 20765 4881300 3269500 4077800 3748300 2215200 2032600 2739600 3523900 2889200 4849500 260800 4990100 3147100 4161900 3723900 2361900 2195800 2654000 3353200 2 2 1 2 2 2 2 2 2 2 2 1724900 2925400 20765 2900000 1861000 2816400 2084100 1272100 1095300 1575500 2035600 1606200 2729600 164270 2959000 1791300 2839700 2071700 1380400 1190900 1526200 1934600 1 1 1 1 1 1 1 1 1 1 1 1378100 2273000 0 1981300 1408500 1261400 1664200 943040 937250 1164100 1488300 1283000 2119800 96531 2031100 1355800 1322300 1652200 981500 1004900 1127800 1418600 1 1 0 1 1 1 1 1 1 1 1 603690000 338660000 265030000 5725 2301 5344 30702;30703 36623;36624 36624 2 FLTPIYHPNIDSAGR Unmodified 1699.8682 0.86820455 2890 Q9NPD8 UBE2T Ubiquitin-conjugating enzyme E2 T yes yes 0 0 0 0 By MS/MS By MS/MS 4 3.29 2 1 2 2 3 55.649 55.564 3 1.9784E-19 16357 20211116_3436_TMUAki_TMT10x_P_F8 165.36 153.09 16299000 27521000 167180 29309000 19722000 24808000 16732000 15678000 14221000 14115000 20786000 15176000 25686000 1391100 29706000 18834000 25346000 17050000 16354000 14810000 13850000 19849000 5 5 3 5 5 5 5 5 5 5 5 9930500 16051000 61452 17540000 13163000 18305000 11086000 9394300 8963900 8398000 12967000 9246400 14983000 886090 17800000 12571000 18401000 11288000 9971300 9354200 8243000 12384000 3 3 2 3 3 3 3 3 3 3 3 6368100 11470000 105730 11769000 6558200 6503400 5645600 6283800 5257100 5717100 7819700 5929100 10703000 505050 11906000 6263700 6945000 5762300 6383000 5456100 5606900 7464100 2 2 1 2 2 2 2 2 2 2 2 3208500000 1844000000 1364400000 5726 2890 5345 30704;30705;30706;30707;30708 36625;36626;36627;36628;36629 36627 5 FLVGFTNK Unmodified 924.5069 0.50690308 1029 P43307;P43307-2 SSR1 Translocon-associated protein subunit alpha yes no 0 0 0 0 By MS/MS By MS/MS 3.8 0.748 2 2 1 3 2 59.737 59.558 2 0.0018216 22444 20211116_3430_TMUAki_TMT10x_P_F3 117.1 72.487 18615000 30765000 129280 28829000 23036000 27319000 19740000 25472000 25963000 23038000 26340000 17333000 28700000 1693600 29525000 22011000 27883000 20388000 25919000 26154000 22600000 25397000 5 5 3 5 5 5 5 5 5 5 5 6718300 10327000 537.76 8927700 9119400 14069000 8003400 8046500 8421400 7700500 8765600 6255100 9630800 559030 9283400 8714000 13880000 8189500 8474800 8561300 7535000 8445200 3 3 1 3 3 3 3 3 3 3 3 11896000 20438000 128750 19902000 13917000 13250000 11736000 17425000 17542000 15337000 17574000 11078000 19069000 1134600 20241000 13297000 14003000 12198000 17444000 17593000 15065000 16952000 2 2 2 2 2 2 2 2 2 2 2 1659000000 385100000 1273900000 5727 1029 5346 30709;30710;30711;30712;30713 36630;36631;36632;36633;36634 36630 5 FLVGPDGVPLRR Unmodified 1324.7616 0.76155464 532 P07203 GPX1 Glutathione peroxidase 1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 51.712 51.482 3 3.986E-07 16225 20211116_3429_TMUAki_TMT10x_P_F2 122.33 89.379 5843000 9341400 137560 9384900 7191100 8724900 6784700 7777000 7159500 6751400 8261000 5441400 8716600 631500 9561200 6893300 8907800 6914800 7924200 7306200 6636000 7935000 4 4 4 4 4 4 4 4 4 4 4 2512400 3933500 40630 4024100 3954200 5498300 3433400 3406500 3259300 2824700 3464800 2339600 3670700 266350 4120900 3780900 5463400 3504500 3551700 3330700 2782700 3336000 2 2 2 2 2 2 2 2 2 2 2 3330600 5407900 96928 5360800 3236900 3226600 3351200 4370400 3900200 3926700 4796200 3101900 5045900 365150 5440300 3112400 3444400 3410300 4372500 3975500 3853300 4599000 2 2 2 2 2 2 2 2 2 2 2 641920000 400510000 241410000 5728 532 5347 30714;30715;30716;30717 36635;36636;36637;36638 36635 4 FLVHNVK Unmodified 855.49667 0.49667274 1382 P62910 RPL32 60S ribosomal protein L32 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 2.8 3 3 1 1 2 5 5 38.616 38.648 2;3 0.0021169 11477 20211116_3439_TMUAki_TMT10x_S_F1 107.22 60.42 29633000 45920000 140290 45761000 36922000 40360000 29547000 24178000 21296000 24818000 32225000 27592000 42847000 2595600 46614000 35219000 41086000 30101000 25418000 22414000 24212000 30748000 10 10 5 10 10 10 10 10 10 10 10 20752000 31609000 49072 31503000 28629000 33597000 20316000 16988000 15541000 17592000 22555000 19322000 29494000 1801300 32177000 27239000 33724000 20894000 18129000 16268000 17157000 21541000 4 4 1 4 4 4 4 4 4 4 4 8881100 14310000 91219 14258000 8293000 6763500 9230800 7189200 5755500 7225500 9669700 8269700 13353000 794290 14437000 7979600 7362000 9206600 7289100 6146200 7055300 9206800 6 6 4 6 6 6 6 6 6 6 6 3920900000 2665500000 1255400000 5729 1382 5348 30718;30719;30720;30721;30722;30723;30724;30725;30726;30727 36639;36640;36641;36642;36643;36644;36645;36646;36647;36648;36649;36650 36644 12 FLVPDHVNMSELIK Oxidation (M) 1656.8545 0.85452832 13 Q9GZQ8;A6NCE7 MAP1LC3B;MAP1LC3B2 Microtubule-associated proteins 1A/1B light chain 3B;Microtubule-associated proteins 1A/1B light chain 3 beta 2 yes no 0 0 1 0 By MS/MS By MS/MS 6.22 1.31 1 2 2 2 2 6 3 59.658 59.923 3 2.5236E-09 19294 20211116_3435_TMUAki_TMT10x_P_F7 126.09 99.545 40842000 70252000 628390 66939000 57875000 88999000 52316000 73291000 69466000 67572000 64736000 38033000 65541000 4210300 68853000 55392000 88952000 53888000 75138000 69752000 66230000 62595000 8 8 8 8 8 8 8 8 8 8 8 22123000 36732000 378170 35562000 36190000 64983000 31590000 38057000 35924000 36354000 33747000 20602000 34270000 2383600 36801000 34608000 63780000 32418000 40001000 36280000 35576000 32622000 4 4 4 4 4 4 4 4 4 4 4 18719000 33520000 250230 31377000 21686000 24016000 20726000 35234000 33542000 31218000 30989000 17431000 31270000 1826700 32051000 20784000 25172000 21470000 35137000 33472000 30654000 29973000 4 4 4 4 4 4 4 4 4 4 4 10478000000 5859800000 4618300000 5730 13 5349 30728;30729;30730;30731;30732;30733;30734;30735;30736 36651;36652;36653;36654;36655;36656;36657;36658;36659;36660;36661 36655 11 11 FLVPDHVNMSELIK Unmodified 1640.8596 0.8596137 13 Q9GZQ8;A6NCE7 MAP1LC3B;MAP1LC3B2 Microtubule-associated proteins 1A/1B light chain 3B;Microtubule-associated proteins 1A/1B light chain 3 beta 2 yes no 0 0 0 0 By MS/MS 8 0 1 1 72.774 72.602 3 7.5312E-10 22827 20211116_3447_TMUAki_TMT10x_S_F8 136.6 122.04 14181000 23280000 0 23905000 14026000 14502000 15252000 12681000 14248000 14341000 17268000 13203000 21725000 1082900 24203000 13474000 15313000 15375000 13034000 14646000 13938000 16565000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14181000 23280000 0 23905000 14026000 14502000 15252000 12681000 14248000 14341000 17268000 13203000 21725000 1082900 24203000 13474000 15313000 15375000 13034000 14646000 13938000 16565000 1 1 0 1 1 1 1 1 1 1 1 995730000 0 995730000 5731 13 5349 30737 36662 36662 1 FLVQNIHTLAELK Unmodified 1524.8664 0.86641364 2280 Q8TDN6 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 3 2.14 1 3 2 1 4 3 69.896 69.667 2;3 4.0835E-41 22214 20211116_3440_TMUAki_TMT10x_S_F2 244.01 207.31 43783000 71683000 721600 69284000 55032000 73987000 51039000 43042000 40576000 40860000 47934000 40769000 66879000 4098100 70921000 52687000 74388000 51656000 45259000 41998000 39996000 46012000 7 7 6 7 7 7 7 7 7 7 7 33839000 52941000 288990 52257000 40570000 64991000 40800000 31690000 30566000 31410000 35971000 31506000 49397000 2807200 53550000 38901000 64675000 41056000 33892000 31735000 30688000 34532000 5 5 4 5 5 5 5 5 5 5 5 9944500 18742000 432620 17026000 14462000 8996200 10239000 11353000 10011000 9449900 11963000 9262500 17482000 1290900 17371000 13787000 9713000 10600000 11367000 10263000 9307700 11480000 2 2 2 2 2 2 2 2 2 2 2 4406200000 2370000000 2036200000 5732 2280 5350 30738;30739;30740;30741;30742;30743;30744 36663;36664;36665;36666;36667;36668;36669;36670;36671 36670 9 FLVYVANFDEKDPR Unmodified 1711.857 0.85697116 1133 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 1 By MS/MS By MS/MS 5.5 2.26 2 2 2 2 3 3 8 6 71.833 71.882 2;3 8.1063E-19 22852 20211116_3428_TMUAki_TMT10x_P_F1 161.76 134.11 191450000 323190000 2080000 290320000 213570000 302470000 218150000 210540000 200360000 216100000 236730000 178270000 301450000 17165000 298680000 204960000 305320000 220490000 218870000 205900000 210820000 227240000 22 22 12 22 22 22 22 22 22 22 22 102190000 164550000 1009500 149610000 108430000 206580000 116490000 110070000 108030000 115610000 123520000 95154000 153480000 8970700 154540000 104200000 204770000 117470000 116950000 110820000 112680000 118680000 13 13 6 13 13 13 13 13 13 13 13 89257000 158640000 1070500 140700000 105140000 95896000 101670000 100470000 92335000 100490000 113210000 83112000 147960000 8194700 144140000 100760000 100560000 103020000 101920000 95084000 98142000 108570000 9 9 6 9 9 9 9 9 9 9 9 40943000000 23229000000 17714000000 5733 1133 5351 30745;30746;30747;30748;30749;30750;30751;30752;30753;30754;30755;30756;30757;30758 36672;36673;36674;36675;36676;36677;36678;36679;36680;36681;36682;36683;36684;36685;36686;36687;36688;36689;36690;36691;36692;36693;36694;36695 36673 24 FLYDDNQR Unmodified 1069.4829 0.48287317 625;1500 Q02880;Q02880-2;P11388;P11388-2;P11388-3;P11388-4 TOP2B;TOP2A DNA topoisomerase 2-beta;DNA topoisomerase 2-alpha no no 0 0 0 0 By MS/MS By matching 3 0 2 1 1 43.594 43.45 2 0.0095543 13324 20211116_3430_TMUAki_TMT10x_P_F3 83.313 71.106 834790 1300900 0 1372700 2461500 2548700 1297600 1413000 1378200 1039300 1303500 777200 1214100 82889 1412900 2330300 2498400 1379600 1482800 1395900 1030500 1259700 1 1 0 1 1 1 1 1 1 1 1 834790 1300900 0 1372700 2461500 2548700 1297600 1413000 1378200 1039300 1303500 777200 1214100 82889 1412900 2330300 2498400 1379600 1482800 1395900 1030500 1259700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 53306000 28189000 25117000 5734 1500;625 5352 30759;30760 36696 36696 1 FLYGCQAPTICFVYQDPQGR Unmodified 2419.1089 0.10892188 1847 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 77.952 77.882 3 2.9707E-09 28377 20211116_3441_TMUAki_TMT10x_S_F3 112.91 106.88 20011000 32099000 79331 33615000 21439000 22973000 22282000 12408000 11039000 14323000 20533000 18631000 29958000 1541100 34027000 20569000 23822000 22209000 13206000 12059000 13909000 19513000 5 5 3 5 5 5 5 5 5 5 5 10548000 17066000 0 17867000 10563000 14311000 11596000 5718800 4844400 6716900 9627700 9819500 15927000 662800 18117000 10140000 14606000 11500000 6278000 5393500 6518900 9139400 2 2 0 2 2 2 2 2 2 2 2 9462900 15033000 79331 15748000 10876000 8661600 10685000 6689000 6194500 7605800 10905000 8811500 14030000 878270 15909000 10428000 9216700 10710000 6927900 6665500 7390500 10374000 3 3 3 3 3 3 3 3 3 3 3 3896200000 1699200000 2197100000 5735 1847 5353 30761;30762;30763;30764 36697;36698;36699;36700;36701 36700 5 FLYKDENR Unmodified 1083.5349 0.53490874 2161 Q8IXT5 RBM12B RNA-binding protein 12B yes yes 0 0 0 1 By MS/MS 6 0 1 1 37.555 37.718 3 0.052654 8889 20211116_3445_TMUAki_TMT10x_S_F6 48.423 26.551 267510 431910 0 448230 287230 251530 300540 308540 308040 276590 396430 249050 403080 19443 453170 275550 269660 304390 309870 316190 271450 379680 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 267510 431910 0 448230 287230 251530 300540 308540 308040 276590 396430 249050 403080 19443 453170 275550 269660 304390 309870 316190 271450 379680 1 1 0 1 1 1 1 1 1 1 1 5797800 0 5797800 5736 2161 5354 30765 36702 36702 1 FLYQLHETEKEDLIREER Unmodified 2347.1808 0.1808245 352 O75643;O75643-2 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 0 0 0 2 By MS/MS By MS/MS 3.67 1.25 2 2 2 3 3 52.913 52.941 5 2.4523E-23 16059 20211116_3442_TMUAki_TMT10x_S_F4 163.45 146.17 14467000 25122000 36777 25812000 23938000 25262000 17518000 19087000 18382000 18855000 20839000 13469000 23444000 1224600 26276000 22785000 25630000 18131000 19711000 18750000 18424000 20027000 6 6 1 6 6 6 6 6 6 6 6 6290500 11198000 0 11107000 15515000 17563000 10765000 8456400 7645500 8146800 9676200 5856700 10449000 610300 11434000 14754000 17290000 11072000 9048300 7986600 7969300 9271400 3 3 0 3 3 3 3 3 3 3 3 8176500 13923000 36777 14705000 8423500 7698500 6752300 10630000 10736000 10708000 11163000 7612600 12995000 614290 14842000 8030500 8340800 7059900 10662000 10763000 10455000 10756000 3 3 1 3 3 3 3 3 3 3 3 2901800000 1774900000 1126900000 5737 352 5355 30766;30767;30768;30769;30770;30771 36703;36704;36705;36706;36707;36708 36707 6 FMADCPHTIGVEFGTR Oxidation (M) 1852.8236 0.8236389 1295 P61106 RAB14 Ras-related protein Rab-14 yes yes 0 0 1 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 50.078 50.236 3 2.2716E-07 13622 20211116_3444_TMUAki_TMT10x_S_F5 104.26 85.424 13790000 24270000 96773 25237000 26445000 30797000 18403000 22940000 22985000 20320000 21538000 12840000 22650000 1321900 25761000 25155000 30855000 19230000 23642000 23132000 19953000 20822000 7 7 4 7 7 7 7 7 7 7 7 9651900 16823000 90353 17631000 22580000 27220000 14784000 16451000 16563000 14548000 15244000 8987100 15701000 1012400 18072000 21456000 26896000 15459000 17213000 16725000 14287000 14746000 5 5 3 5 5 5 5 5 5 5 5 4138000 7446400 6420.2 7606700 3865700 3577200 3619100 6489300 6423000 5771800 6294500 3852700 6948800 309540 7688500 3698500 3958200 3770700 6429400 6407000 5666600 6076000 2 2 1 2 2 2 2 2 2 2 2 1801800000 1032100000 769700000 5738 1295 5356 30772;30773;30774;30775;30776 36709;36710;36711;36712;36713;36714;36715 36714 1743 7 FMADIDLDPGCTLNKK Unmodified 1836.875 0.87500577 819 P26639;P26639-2 TARS Threonine--tRNA ligase, cytoplasmic yes no 0 0 0 1 By matching By MS/MS 7 0 2 1 1 68.05 68.486 3 1.6869E-10 23425 20211116_3446_TMUAki_TMT10x_S_F7 127.76 96.367 7148600 11570000 8324.8 11580000 7984500 5735800 7219500 3880300 3230900 4600300 8070100 6656100 10796000 612130 11725000 7637200 6162000 7239600 4060500 3633100 4463200 7635100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7148600 11570000 8324.8 11580000 7984500 5735800 7219500 3880300 3230900 4600300 8070100 6656100 10796000 612130 11725000 7637200 6162000 7239600 4060500 3633100 4463200 7635100 1 1 1 1 1 1 1 1 1 1 1 1020900000 575130000 445760000 5739 819 5357 30777;30778 36716 36716 1 FMATNDLMTELQK 2 Oxidation (M) 1572.7164 0.71637986 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 2 0 By MS/MS By MS/MS 5 0.707 1 2 1 3 1 57.823 57.955 3 0.00090643 16869 20211116_3444_TMUAki_TMT10x_S_F5 76.326 60.436 17974000 29649000 47511 30701000 24970000 32085000 21219000 28739000 27550000 25656000 26404000 16735000 27669000 1491300 31266000 23841000 32525000 21916000 29297000 27709000 25184000 25506000 5 5 1 5 5 5 5 5 5 5 5 11798000 18462000 0 19191000 18631000 25694000 15699000 17516000 16952000 15815000 17373000 10984000 17230000 950050 19624000 17783000 25590000 16116000 18170000 17206000 15516000 16746000 3 3 0 3 3 3 3 3 3 3 3 6175600 11187000 47511 11509000 6338500 6390800 5520000 11224000 10597000 9841200 9030600 5750300 10440000 541210 11642000 6058900 6934900 5799200 11126000 10503000 9668400 8760000 2 2 1 2 2 2 2 2 2 2 2 1369100000 939190000 429890000 5740 2116 5358 30779;30780;30781;30782 36717;36718;36719;36720;36721 36721 2599;2600 5 FMATNDLMTELQK Unmodified 1540.7266 0.72655062 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 6 0.632 1 3 1 2 3 76.127 76.139 2;3 9.0532E-26 26612 20211116_3446_TMUAki_TMT10x_S_F7 234.92 208.25 6210800 9959200 50878 10729000 6797900 7453600 7403000 3789200 3398200 4107400 6860000 5783200 9295800 570550 10842000 6536400 7713000 7353600 4047100 3755200 3998400 6510500 3 3 3 3 3 3 3 3 3 3 3 3553100 5910700 43528 5889000 3863900 5675000 4624800 2811700 2537700 2900100 4167100 3308600 5515300 339500 6006100 3726600 5730100 4586700 3005900 2730800 2828800 3969400 2 2 2 2 2 2 2 2 2 2 2 2657600 4048400 7350.8 4840000 2934000 1778700 2778300 977560 860530 1207300 2692900 2474600 3780600 231060 4835900 2809800 1982800 2766900 1041200 1024400 1169700 2541100 1 1 1 1 1 1 1 1 1 1 1 1079700000 464100000 615580000 5741 2116 5358 30783;30784;30785;30786;30787 36722;36723;36724;36725 36725 4 FMCEVQVEGYNYTGMGNSTNKK 2 Oxidation (M) 2588.0982 0.098158779 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 2 1 By MS/MS By MS/MS 7 0 3 1 2 49.498 50.037 3;4 4.3616E-05 15324 20211116_3435_TMUAki_TMT10x_P_F7 69.72 62.008 12000000 22009000 68496 21337000 15905000 24105000 14527000 24671000 27727000 22346000 20252000 11173000 20535000 814270 21856000 15213000 24399000 15216000 24985000 27365000 21920000 19768000 5 5 2 5 5 5 5 5 5 5 5 5361300 10154000 0 10550000 8294500 16136000 7896800 11488000 13547000 10441000 9690100 4991600 9476500 255030 10818000 7940500 15989000 8205800 11883000 13397000 10240000 9467100 2 2 0 2 2 2 2 2 2 2 2 6638700 11855000 68496 10786000 7610200 7969500 6630100 13183000 14181000 11905000 10562000 6181200 11058000 559250 11037000 7272100 8409700 7010200 13102000 13968000 11680000 10301000 3 3 2 3 3 3 3 3 3 3 3 3534000000 1589400000 1944600000 5742 1546 5359 30788;30789;30790 36726;36727;36728;36729;36730 36727 2075;2076 5 FMCEVQVEGYNYTGMGNSTNKK Oxidation (M) 2572.1032 0.10324416 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 1 1 By MS/MS By MS/MS 7 0 4 2 2 54.543 55.131 3;4 1.1661E-08 17163 20211116_3435_TMUAki_TMT10x_P_F7 102.45 96.155 14475000 24590000 192810 24899000 19233000 21818000 17363000 14800000 13236000 13893000 18737000 13479000 22946000 1404200 25333000 18403000 22259000 17582000 15375000 13841000 13606000 17905000 5 5 4 5 5 5 5 5 5 5 5 7909100 13102000 158970 13948000 12807000 16293000 11411000 7379300 6223400 6746700 9865500 7365300 12228000 872470 14204000 12255000 16253000 11487000 7933700 6687500 6615200 9404200 3 3 3 3 3 3 3 3 3 3 3 6566300 11488000 33846 10952000 6425400 5525200 5952200 7420700 7012400 7146600 8871700 6113700 10718000 531740 11129000 6148400 6006000 6095100 7441000 7153500 6991000 8500700 2 2 1 2 2 2 2 2 2 2 2 3797200000 928300000 2868900000 5743 1546 5359 30791;30792;30793;30794 36731;36732;36733;36734;36735;36736 36734 2075;2076 6 FMDQHPEMDFSK Unmodified 1510.6221 0.62208554 3226 Q9Y266 NUDC Nuclear migration protein nudC yes yes 0 0 0 0 By MS/MS 4 0 1 1 54.701 54.716 3 0.092125 16759 20211116_3442_TMUAki_TMT10x_S_F4 37.013 30.124 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5744 3226 5360 30795 36737 36737 1 FMEPYIFGSR Oxidation (M) 1261.5801 0.58014438 3264 Q9Y399 MRPS2 28S ribosomal protein S2, mitochondrial yes yes 0 0 1 0 By MS/MS 7 0 1 1 61.532 62.025 2 0.04887 20719 20211116_3446_TMUAki_TMT10x_S_F7 64.268 47.492 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5745 3264 5361 30796 36738 36738 3240 1 FMEQVIFK Unmodified 1040.5365 0.53648865 1296 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 3 1 2 71.917 71.818 2 0.003257 22523 20211116_3447_TMUAki_TMT10x_S_F8 99.139 50.577 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5746 1296 5362 30797;30798;30799 36739;36740;36741 36741 3 FMEQVIFK Oxidation (M) 1056.5314 0.53140327 1296 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 1 0 By matching By MS/MS 6 0 2 1 1 59.731 59.767 2 0.069571 17856 20211116_3445_TMUAki_TMT10x_S_F6 59.245 23.365 4293500 7433300 39827 7430200 3997100 5131100 4291300 6688400 7187300 6056500 6869700 3998000 6936100 388930 7545800 3842500 5404000 4427100 6702800 7173800 5941200 6636800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4293500 7433300 39827 7430200 3997100 5131100 4291300 6688400 7187300 6056500 6869700 3998000 6936100 388930 7545800 3842500 5404000 4427100 6702800 7173800 5941200 6636800 1 1 1 1 1 1 1 1 1 1 1 748620000 397970000 350640000 5747 1296 5362 30800;30801 36742 36742 1746 1 FMERDPDELR Oxidation (M) 1322.5925 0.59249998 683 P15374 UCHL3 Ubiquitin carboxyl-terminal hydrolase isozyme L3 yes yes 0 0 1 1 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 33.825 33.73 3 0.03732 8975 20211116_3429_TMUAki_TMT10x_P_F2 52.903 41.335 1601600 2600100 11524 2973000 3659700 2805200 1986800 2079500 2436000 1643900 2558300 1491300 2427600 162680 3004100 3467100 2851800 2116700 2137900 2462900 1623500 2464100 5 5 3 5 5 5 5 5 5 5 5 1035800 1551100 6055.1 1792000 3076300 2365500 1379500 1336300 1618900 1061500 1580200 964440 1448300 110930 1819700 2906800 2351300 1495400 1402300 1635100 1048000 1525600 2 2 1 2 2 2 2 2 2 2 2 565770 1049000 5468.4 1181000 583380 439760 607350 743250 817080 582430 978060 526820 979290 51748 1184400 560270 500540 621300 735560 827770 575460 938510 3 3 2 3 3 3 3 3 3 3 3 83519000 65795000 17724000 5748 683 5363 30802;30803;30804;30805 36743 36743 769 1 FMNPFNMPNLYQK 2 Oxidation (M) 1674.7534 0.75343407 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 2 0 By MS/MS 2 0 1 1 66.948 66.637 3 0.0011808 22445 20211116_3429_TMUAki_TMT10x_P_F2 73.848 57.449 2192500 3520500 0 3290600 2171900 4861000 2491800 3138000 3333700 2807500 2926500 2041300 3284100 162890 3396600 2089300 4816500 2536800 3267500 3340200 2755600 2835700 1 1 0 1 1 1 1 1 1 1 1 2192500 3520500 0 3290600 2171900 4861000 2491800 3138000 3333700 2807500 2926500 2041300 3284100 162890 3396600 2089300 4816500 2536800 3267500 3340200 2755600 2835700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 534800000 534800000 0 5749 897 5364 30806 36744 36744 1106;1107 1 FMNPFNMPNLYQK Oxidation (M) 1658.7585 0.75851945 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 1 0 By MS/MS 4 0 1 1 73.791 73.679 3 4.4546E-06 24536 20211116_3442_TMUAki_TMT10x_S_F4 99.215 76.495 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5750 897 5364 30807 36745 36745 1106;1107 1 FMQASEDLLK Unmodified 1180.5798 0.57981002 770;684 P15531;P15531-2;P22392-2 NME1;NME2 Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase B no no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 66.935 66.626 2 4.3718E-05 22906 20211116_3430_TMUAki_TMT10x_P_F3 133.76 81.902 21224000 35386000 57526 39767000 23721000 21656000 20925000 13437000 11950000 13775000 23138000 19760000 33035000 1572500 39989000 22660000 22994000 21093000 14087000 12946000 13439000 21974000 3 3 1 3 3 3 3 3 3 3 3 6222100 10314000 0 10841000 10890000 10916000 8638400 3920000 3485400 4185300 6929700 5792600 9626200 480140 11023000 10379000 10959000 8720500 4346600 3893500 4076600 6578200 1 1 0 1 1 1 1 1 1 1 1 15002000 25072000 57526 28926000 12831000 10740000 12286000 9516900 8464200 9589700 16209000 13967000 23409000 1092400 28965000 12281000 12036000 12373000 9740100 9052900 9362800 15396000 2 2 1 2 2 2 2 2 2 2 2 1878300000 616630000 1261600000 5751 684;770 5365 30808;30809;30810 36746;36747;36748 36746 3 FMQASEDLLK Oxidation (M) 1196.5747 0.57472465 770;684 P15531;P15531-2;P22392-2 NME1;NME2 Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase B no no 0 0 1 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 4 1 56.394 56.46 2;3 0.001663 16969 20211116_3431_TMUAki_TMT10x_P_F4 71.555 30.568 17253000 27886000 40305 33452000 38053000 37049000 21357000 19644000 25395000 19274000 24694000 16063000 26042000 1589200 33787000 36059000 37130000 22661000 20840000 25634000 18839000 23843000 4 4 1 4 4 4 4 4 4 4 4 12608000 20416000 40305 24294000 34463000 33642000 18204000 14568000 18169000 14021000 18106000 11739000 19065000 1301300 24650000 32632000 33267000 19314000 15758000 18483000 13716000 17468000 3 3 1 3 3 3 3 3 3 3 3 4644100 7470000 0 9157800 3590900 3407400 3152600 5075900 7226300 5253100 6587300 4323400 6976600 287890 9137300 3426700 3863400 3346800 5081900 7150600 5123100 6374300 1 1 0 1 1 1 1 1 1 1 1 1874700000 1294500000 580110000 5752 684;770 5365 30811;30812;30813;30814;30815 36749;36750;36751;36752;36753 36750 770 5 FMQDASDVMQLLLK Oxidation (M) 1653.8106 0.8106146 84 O00410;O00410-2;O00410-3 IPO5 Importin-5 yes no 0 0 1 0 By MS/MS By MS/MS 6.83 0.687 2 3 1 3 3 81.039 81.05 2;3 5.5449E-07 28691 20211116_3446_TMUAki_TMT10x_S_F7 118.24 92.803 11678000 18929000 117880 17414000 12598000 15229000 14829000 7481600 5684500 8670700 12717000 10874000 17658000 1067200 17840000 12142000 15475000 14642000 8033400 6432700 8419300 12050000 5 5 4 5 5 5 5 5 5 5 5 5674200 8658700 81.769 8002700 5234400 8853700 6440400 3175000 2541000 4189500 5995800 5283100 8077100 440590 8223100 5047800 8839400 6349000 3545000 2878300 4049800 5677000 2 2 1 2 2 2 2 2 2 2 2 6003800 10271000 117800 9411300 7364000 6375500 8388300 4306600 3143500 4481300 6721700 5591000 9580500 626590 9616400 7093900 6635700 8292700 4488300 3554400 4369400 6373400 3 3 3 3 3 3 3 3 3 3 3 2480500000 1159700000 1320800000 5753 84 5366 30816;30817;30818;30819;30820;30821 36754;36755;36756;36757;36758 36757 53;54 5 FMQDASDVMQLLLK 2 Oxidation (M) 1669.8055 0.80552922 84 O00410;O00410-2;O00410-3 IPO5 Importin-5 yes no 0 0 2 0 By MS/MS 6 0 1 1 77.735 77.704 3 0.00090698 25199 20211116_3445_TMUAki_TMT10x_S_F6 73.887 52.934 2711800 4767700 67472 4050400 4596300 4052300 3518500 6106000 6235100 5677600 4841100 2525500 4446100 314110 4182700 4384200 4174200 3709500 6091700 6174800 5562700 4713200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2711800 4767700 67472 4050400 4596300 4052300 3518500 6106000 6235100 5677600 4841100 2525500 4446100 314110 4182700 4384200 4174200 3709500 6091700 6174800 5562700 4713200 1 1 1 1 1 1 1 1 1 1 1 382590000 0 382590000 5754 84 5366 30822 36759 36759 53;54 1 FMQDPMEIFVDDETK 2 Oxidation (M) 1875.7907 0.79066702 1665 Q13838;Q13838-2 DDX39B Spliceosome RNA helicase DDX39B yes no 0 0 2 0 By MS/MS 1 0 1 1 66.118 65.895 3 0.052944 22539 20211116_3439_TMUAki_TMT10x_S_F1 40.962 28.986 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5755 1665 5367 30823 36760 36760 2233;2234 1 FMQTFVLAPEGSVANK Oxidation (M) 1753.8709 0.87090667 1616 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 0 0 1 0 By MS/MS By MS/MS 6.64 1.92 1 2 4 4 6 5 65.77 65.967 2;3 4.7423E-15 20638 20211116_3436_TMUAki_TMT10x_P_F8 156 138.41 35006000 59612000 473320 54095000 38929000 63953000 40566000 48527000 49790000 46738000 48342000 32595000 55604000 2974800 55723000 37379000 64197000 41348000 50064000 50198000 45720000 46679000 15 15 7 15 15 15 15 15 15 15 15 23749000 40439000 446390 36986000 26879000 50900000 29360000 31979000 32959000 31560000 32505000 22116000 37721000 2249100 38184000 25860000 50570000 29762000 33456000 33357000 30840000 31371000 10 10 6 10 10 10 10 10 10 10 10 11257000 19173000 26932 17109000 12050000 13053000 11206000 16549000 16831000 15178000 15837000 10480000 17883000 725700 17539000 11519000 13626000 11585000 16608000 16841000 14880000 15308000 5 5 1 5 5 5 5 5 5 5 5 9733800000 5036800000 4697000000 5756 1616 5368 30824;30825;30826;30827;30828;30829;30830;30831;30832;30833;30834 36761;36762;36763;36764;36765;36766;36767;36768;36769;36770;36771;36772;36773;36774;36775 36770 2168 15 FMQTFVLAPEGSVANK Unmodified 1737.876 0.87599205 1616 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.62 3.16 4 1 1 2 3 5 76.445 76.43 2;3 1.486E-29 26797 20211116_3439_TMUAki_TMT10x_S_F1 166.45 132.22 59010000 98224000 189340 93551000 64635000 71951000 66326000 40270000 34222000 44148000 65903000 54941000 91636000 4641500 95444000 61997000 73919000 66195000 42659000 37344000 42958000 62593000 11 11 4 11 11 11 11 11 11 11 11 28815000 46257000 0 44443000 28112000 43613000 31022000 18886000 14991000 20418000 31860000 26826000 43156000 1945600 45455000 27000000 43925000 30819000 20496000 16551000 19878000 30212000 4 4 0 4 4 4 4 4 4 4 4 30195000 51967000 189340 49108000 36524000 28338000 35304000 21384000 19231000 23731000 34042000 28115000 48480000 2695900 49989000 34997000 29994000 35377000 22163000 20793000 23080000 32381000 7 7 4 7 7 7 7 7 7 7 7 7580800000 3242600000 4338200000 5757 1616 5368 30835;30836;30837;30838;30839;30840;30841;30842 36776;36777;36778;36779;36780;36781;36782;36783;36784;36785;36786;36787;36788 36784 13 FMQTFVLAPEGSVPNK Unmodified 1763.8916 0.89164211 3188 Q9UN86;Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 76.789 76.757 3 0.013753 24938 20211116_3428_TMUAki_TMT10x_P_F1 45.684 24.126 10228000 18646000 84760 13705000 14611000 20811000 15851000 16358000 13974000 15398000 15528000 9521800 17380000 748850 14437000 14031000 20662000 15956000 16827000 14354000 15078000 14931000 2 2 1 2 2 2 2 2 2 2 2 5881000 10594000 0 7057600 7618900 14277000 9722100 10243000 8553900 9079400 9053900 5473800 9871800 272420 7557600 7342600 14008000 9715400 10583000 8771000 8915300 8718400 1 1 0 1 1 1 1 1 1 1 1 4346800 8052400 84760 6647500 6992500 6533800 6129000 6115000 5420300 6318800 6474100 4048000 7508400 476430 6879100 6688200 6653800 6240100 6244500 5582600 6162800 6212700 1 1 1 1 1 1 1 1 1 1 1 1032000000 714830000 317210000 5758 3188 5369 30843;30844 36789;36790 36789 2 FMRDPIR Unmodified 933.48546 0.48545613 1277;1697 P60842;P60842-2;Q14240;Q14240-2 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 0 0 0 1 By MS/MS By MS/MS 5.2 3.43 2 3 2 3 29.985 30.049 3 0.0097312 8286 20211116_3428_TMUAki_TMT10x_P_F1 89.752 52.194 1877500 3145300 144520 3242200 3101600 2240900 2094300 1172000 1236000 957690 1800100 1749200 2935200 303400 3285800 2957100 2320600 2150500 1239100 1315000 944150 1719000 3 3 2 3 3 3 3 3 3 3 3 1037600 1587200 72340 1666600 2037700 1595600 1299200 657780 630100 565450 990040 966660 1481300 163360 1693500 1939400 1608800 1335800 713350 683070 556060 943910 2 2 1 2 2 2 2 2 2 2 2 839840 1558100 72183 1575600 1063900 645340 795080 514170 605920 392230 810020 782510 1453900 140040 1592200 1017700 711870 814690 525750 631940 388100 775080 1 1 1 1 1 1 1 1 1 1 1 231970000 181080000 50893000 5759 1277;1697 5370 30845;30846;30847;30848;30849 36791;36792;36793;36794 36791 4 FMSVQRPGPYDRPGTAR Oxidation (M) 1949.953 0.95301359 1181 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 0 0 1 2 By MS/MS By MS/MS 2.3 1.35 4 2 2 1 1 5 5 31.91 31.841 3;4 1.5895E-21 9682 20211116_3441_TMUAki_TMT10x_S_F3 166.56 153.42 7431600 12164000 226910 13588000 18640000 15900000 9735500 11241000 13206000 9553800 11809000 6921000 11356000 920160 13796000 17661000 15950000 10448000 11614000 13233000 9400200 11435000 14 14 6 14 14 14 14 14 14 14 14 5583300 8959300 216930 9856200 16993000 14292000 8154400 8151300 9513900 6830400 8543200 5200000 8363400 796890 10058000 16083000 14148000 8775600 8558000 9584800 6725300 8271400 8 8 4 8 8 8 8 8 8 8 8 1848300 3204700 9983.2 3732200 1646800 1607700 1581100 3090100 3692100 2723400 3266200 1721000 2992300 123270 3738500 1577700 1802100 1672600 3056000 3648500 2674900 3164000 6 6 2 6 6 6 6 6 6 6 6 4470600000 2661400000 1809200000 5760 1181 5371 30850;30851;30852;30853;30854;30855;30856;30857;30858;30859 36795;36796;36797;36798;36799;36800;36801;36802;36803;36804;36805;36806;36807;36808 36805 1590 14 FMSVQRPGPYDRPGTAR Unmodified 1933.9581 0.95809897 1181 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 0 0 0 2 By MS/MS By MS/MS 3.62 1.41 1 1 1 2 3 6 2 35.357 35.317 3;4 3.9289E-47 8487 20211116_3431_TMUAki_TMT10x_P_F4 248.13 220.55 8269600 13194000 109970 17967000 20223000 14073000 11478000 6011200 5222600 6023600 10914000 7700400 12329000 920970 17934000 19175000 14396000 11906000 6519000 5788700 5882500 10352000 10 10 6 10 10 10 10 10 10 10 10 6928700 10926000 100480 14825000 18979000 13286000 10418000 5034400 4407300 5050400 9013300 6451900 10210000 813810 14826000 17987000 13444000 10829000 5535500 4910200 4931800 8552200 8 8 5 8 8 8 8 8 8 8 8 1340900 2267600 9496.2 3141700 1243800 787280 1059200 976810 815210 973230 1900800 1248500 2119200 107160 3108100 1187800 951510 1076500 983480 878540 950660 1800100 2 2 1 2 2 2 2 2 2 2 2 2095900000 1749800000 346070000 5761 1181 5371 30860;30861;30862;30863;30864;30865;30866;30867 36809;36810;36811;36812;36813;36814;36815;36816;36817;36818 36813 10 FMTDPIR Unmodified 878.43202 0.43202358 973 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 48.382 48.536 2 0.0055815 12847 20211116_3434_TMUAki_TMT10x_P_F6 107.74 48.104 11542000 16839000 101700 20286000 16882000 14229000 12007000 10716000 9623700 9079400 13663000 10747000 15726000 1100900 20361000 16069000 14790000 12361000 11023000 10038000 8934800 13055000 4 4 3 4 4 4 4 4 4 4 4 5715200 8066100 38608 9842700 11537000 10211000 6676000 5169700 4573200 4469100 6557500 5321500 7533200 565760 9921200 10941000 10266000 6960800 5489600 4814900 4393600 6264300 2 2 1 2 2 2 2 2 2 2 2 5826900 8773000 63095 10443000 5345100 4017500 5331200 5546000 5050400 4610300 7105900 5425900 8192300 535140 10440000 5128600 4523500 5399700 5533600 5223200 4541200 6791100 2 2 2 2 2 2 2 2 2 2 2 465290000 261200000 204090000 5762 973 5372 30868;30869;30870;30871 36819;36820;36821;36822 36820 4 FMTPVIQDNPSGWGPCAVPEQFR Oxidation (M) 2648.2152 0.21517787 185 O15371;O15371-2;O15371-3 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 0 0 1 0 By MS/MS 7 0 1 1 76.97 77.052 3 0.0032311 27043 20211116_3446_TMUAki_TMT10x_S_F7 53.266 43.478 2073600 3765600 0 3229800 2895800 3038300 2884700 2906500 3073100 2935700 2945400 1930300 3511700 135090 3330000 2773200 3104100 2932400 2962600 3113600 2866000 2845200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2073600 3765600 0 3229800 2895800 3038300 2884700 2906500 3073100 2935700 2945400 1930300 3511700 135090 3330000 2773200 3104100 2932400 2962600 3113600 2866000 2845200 1 1 0 1 1 1 1 1 1 1 1 729140000 0 729140000 5763 185 5373 30872 36823 36823 136 1 FMVQTIFAPPNTSDMEAVWK 2 Oxidation (M) 2343.0915 0.091540484 3050 Q9P0L0;Q9P0L0-2 VAPA Vesicle-associated membrane protein-associated protein A yes no 0 0 2 0 By MS/MS 8 0 1 1 78.54 78.545 3 0.005595 25802 20211116_3436_TMUAki_TMT10x_P_F8 51.819 44.867 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5764 3050 5374 30873 36824 36824 3093;3094 1 FNADEFEDMVAEK Oxidation (M) 1559.645 0.64498906 827 P27635 RPL10 60S ribosomal protein L10 yes yes 0 0 1 0 By MS/MS By MS/MS 2.23 1.04 7 6 6 3 12 10 63.601 63.374 2;3 2.9845E-09 21129 20211116_3429_TMUAki_TMT10x_P_F2 126.32 93.821 122180000 205320000 326520 200120000 148200000 207040000 136160000 125750000 166580000 149770000 154430000 113750000 191570000 9526300 204630000 141730000 208660000 139690000 132680000 167710000 145290000 149350000 20 20 9 20 20 20 20 20 20 20 20 80985000 134960000 194080 133720000 109090000 169980000 100180000 82593000 111300000 100100000 101690000 75399000 125930000 6440900 137040000 104330000 168970000 102430000 88910000 112400000 97043000 98390000 13 13 6 13 13 13 13 13 13 13 13 41193000 70361000 132440 66402000 39108000 37054000 35979000 43159000 55281000 49671000 52742000 38352000 65639000 3085400 67582000 37400000 39696000 37256000 43768000 55304000 48243000 50957000 7 7 3 7 7 7 7 7 7 7 7 20276000000 12863000000 7413600000 5765 827 5375 30874;30875;30876;30877;30878;30879;30880;30881;30882;30883;30884;30885;30886;30887;30888;30889;30890;30891;30892;30893;30894;30895 36825;36826;36827;36828;36829;36830;36831;36832;36833;36834;36835;36836;36837;36838;36839;36840;36841;36842;36843;36844;36845;36846;36847 36833 996 23 FNADEFEDMVAEK Unmodified 1543.6501 0.65007443 827 P27635 RPL10 60S ribosomal protein L10 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.953 4 4 2 1 5 6 76.626 76.565 2;3 6.4617E-44 26812 20211116_3439_TMUAki_TMT10x_S_F1 287.29 248.99 127210000 202980000 883400 221000000 121870000 96627000 131830000 36984000 33456000 53298000 117680000 118440000 189470000 10641000 222320000 117120000 104770000 130160000 41101000 41330000 51381000 110920000 12 12 8 12 12 12 12 12 12 12 12 51706000 78113000 156020 86984000 47858000 49330000 56094000 13370000 12716000 19628000 45355000 48139000 72921000 3724700 87548000 46062000 51769000 55125000 15596000 15993000 18912000 42742000 5 5 1 5 5 5 5 5 5 5 5 75500000 124870000 727380 134010000 74013000 47297000 75739000 23614000 20741000 33669000 72327000 70304000 116550000 6916500 134770000 71055000 53000000 75032000 25506000 25337000 32469000 68174000 7 7 7 7 7 7 7 7 7 7 7 13885000000 6913300000 6972100000 5766 827 5375 30896;30897;30898;30899;30900;30901;30902;30903;30904;30905;30906 36848;36849;36850;36851;36852;36853;36854;36855;36856;36857;36858;36859 36854 12 FNADEFEDMVAEKR Oxidation (M) 1715.7461 0.74610008 827 P27635 RPL10 60S ribosomal protein L10 yes yes 0 0 1 1 By MS/MS By MS/MS 3.11 0.737 2 4 3 6 3 56.096 55.901 3 0.00037073 19641 20211116_3441_TMUAki_TMT10x_S_F3 79.614 68.401 31611000 55131000 230250 48362000 54673000 100160000 43891000 146220000 93502000 83707000 71650000 29434000 51418000 2994600 50590000 52156000 99875000 46620000 144470000 92176000 84328000 69794000 11 11 7 11 11 11 11 11 11 11 11 17869000 30612000 179020 27554000 36488000 78651000 31006000 76587000 50273000 44054000 38553000 16639000 28552000 1880200 29090000 34857000 76926000 32334000 76998000 49885000 44366000 37553000 6 6 5 6 6 6 6 6 6 6 6 13742000 24519000 51229 20808000 18186000 21508000 12884000 69630000 43228000 39653000 33097000 12794000 22865000 1114400 21501000 17298000 22949000 14286000 67469000 42290000 39962000 32241000 5 5 2 5 5 5 5 5 5 5 5 5703300000 3387600000 2315700000 5767 827 5376 30907;30908;30909;30910;30911;30912;30913;30914;30915 36860;36861;36862;36863;36864;36865;36866;36867;36868;36869;36870;36871 36869 996 12 FNADEFEDMVAEKR Unmodified 1699.7512 0.75118546 827 P27635 RPL10 60S ribosomal protein L10 yes yes 0 0 0 1 By MS/MS 4 0.816 1 1 1 3 67.015 66.944 3 4.0293E-14 24139 20211116_3441_TMUAki_TMT10x_S_F3 135.23 107.59 44334000 75023000 609550 72131000 52260000 41064000 44802000 41119000 31462000 38804000 55004000 41283000 69993000 4266900 73325000 49953000 43751000 45422000 41735000 33426000 37993000 52332000 5 5 4 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 44334000 75023000 609550 72131000 52260000 41064000 44802000 41119000 31462000 38804000 55004000 41283000 69993000 4266900 73325000 49953000 43751000 45422000 41735000 33426000 37993000 52332000 5 5 4 5 5 5 5 5 5 5 5 1013100000 0 1013100000 5768 827 5376 30916;30917;30918 36872;36873;36874 36872 3 FNAHGDANTIVCNSK Unmodified 1646.7471 0.74710314 572 P09382 LGALS1 Galectin-1 yes yes 0 0 0 0 By MS/MS 5 0 1 1 37.734 37.88 3 1.3569E-06 8684 20211116_3444_TMUAki_TMT10x_S_F5 95.347 74.966 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5769 572 5377 30919 36875 36875 1 FNALFAQGNYSEAAK Unmodified 1629.7787 0.77872084 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS 8 0 2 2 65.926 65.872 2;3 2.2916E-36 20027 20211116_3447_TMUAki_TMT10x_S_F8 218.54 200.23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5770 1471 5378 30920;30921 36876;36877 36876 2 FNALFVRPHIR Unmodified 1368.7779 0.7778734 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 46.999 47.527 4 1.9114E-05 14926 20211116_3446_TMUAki_TMT10x_S_F7 104.52 89.551 1719200 2767800 18572 3247000 3057300 3639500 2336600 2829400 2334200 2287100 2545000 1600900 2584400 178580 3284500 2914500 3665300 2407700 2901400 2382200 2256000 2448600 3 3 3 3 3 3 3 3 3 3 3 1242400 1956600 13513 2389900 2571300 3197500 1895900 2073800 1667000 1670700 1826800 1156900 1827300 134210 2419500 2449400 3182400 1951300 2153100 1711500 1648300 1757300 2 2 2 2 2 2 2 2 2 2 2 476780 811210 5059 857100 485930 442000 440760 755600 667230 616390 718260 443970 757110 44371 864940 465100 482940 456460 748250 670700 607740 691300 1 1 1 1 1 1 1 1 1 1 1 441640000 244220000 197420000 5771 1695 5379 30922;30923 36878;36879;36880 36880 3 FNASQLITQR Unmodified 1176.6251 0.62512073 2593 Q99623;Q99623-2 PHB2 Prohibitin-2 yes no 0 0 0 0 By MS/MS By MS/MS 2.8 2.64 2 2 1 3 2 52.232 52.109 2 9.6451E-10 15111 20211116_3440_TMUAki_TMT10x_S_F2 191.4 139.61 17394000 28988000 1511.5 34371000 26538000 32910000 19859000 25115000 28235000 22998000 25165000 16195000 27069000 1442600 34662000 25270000 33441000 20752000 25865000 28249000 22548000 24371000 6 6 2 6 6 6 6 6 6 6 6 11042000 18204000 1511.5 21176000 22171000 27389000 15293000 15847000 17602000 14552000 15881000 10280000 16997000 995590 21486000 21081000 27259000 15944000 16656000 17745000 14266000 15373000 4 4 2 4 4 4 4 4 4 4 4 6352300 10784000 0 13195000 4367300 5520800 4565700 9267900 10633000 8445400 9284400 5914200 10072000 447050 13176000 4189200 6181800 4808600 9209300 10504000 8282100 8998000 2 2 0 2 2 2 2 2 2 2 2 2514400000 1658500000 855940000 5772 2593 5380 30924;30925;30926;30927;30928 36881;36882;36883;36884;36885;36886 36886 6 FNDEHIPDSPFVVPVASLSDDAR Unmodified 2526.2027 0.20268215 1703 Q14315;Q14315-2 FLNC Filamin-C yes no 0 0 0 0 By MS/MS By MS/MS 2.8 0.748 2 2 1 3 2 75.667 75.53 3 7.328E-28 27491 20211116_3441_TMUAki_TMT10x_S_F3 165.38 151.02 6574700 11081000 122900 10180000 7416600 12190000 8613100 7481900 7625500 9021400 8698900 6122600 10337000 671220 10479000 7148900 12189000 8643500 7890800 7838900 8747300 8358200 5 5 4 5 5 5 5 5 5 5 5 3988000 6893600 103600 6529800 4297200 9369700 5522100 4729600 5031700 5907400 5402500 3714000 6431100 431510 6729600 4157400 9265800 5522100 5078100 5153500 5720900 5200100 3 3 3 3 3 3 3 3 3 3 3 2586700 4187800 19300 3650300 3119400 2820500 3091000 2752300 2593800 3114000 3296300 2408700 3905600 239700 3749400 2991400 2923000 3121400 2812600 2685400 3026400 3158100 2 2 1 2 2 2 2 2 2 2 2 1751000000 1333400000 417630000 5773 1703 5381 30929;30930;30931;30932;30933 36887;36888;36889;36890;36891;36892;36893 36891 7 FNDIHVPIRLECVK Unmodified 1738.9189 0.91885991 2945 Q9NTI5;Q9NTI5-2;Q9NTI5-3 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 0 0 0 1 By MS/MS By matching 8 0 2 1 1 58.035 58.107 4 3.5936E-06 17435 20211116_3436_TMUAki_TMT10x_P_F8 108.89 90.061 2252800 2950700 0 3632300 3604800 5014900 2690000 2792400 1970700 2365000 2995400 2097300 2755800 163170 3678000 3430700 4973700 2754100 2938500 2072700 2327400 2857900 1 1 0 1 1 1 1 1 1 1 1 2252800 2950700 0 3632300 3604800 5014900 2690000 2792400 1970700 2365000 2995400 2097300 2755800 163170 3678000 3430700 4973700 2754100 2938500 2072700 2327400 2857900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1137700000 642310000 495430000 5774 2945 5382 30934;30935 36894 36894 1 FNDPHVK Unmodified 855.4239 0.42390173 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 33.144 33.13 3 0.099523 7663 20211116_3431_TMUAki_TMT10x_P_F4 29.81 9.4802 4525700 6869000 737110 6956000 5265100 8858800 3132600 5287000 5595200 5615800 6240000 4219300 6409800 1072500 7118600 5039500 8827100 3365300 5565600 5607300 5471100 5999600 1 1 1 1 1 1 1 1 1 1 1 4525700 6869000 737110 6956000 5265100 8858800 3132600 5287000 5595200 5615800 6240000 4219300 6409800 1072500 7118600 5039500 8827100 3365300 5565600 5607300 5471100 5999600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 63326000 63326000 0 5775 352 5383 30936;30937 36895 36895 1 FNECGHVLYADIK Unmodified 1564.7344 0.73441319 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS By MS/MS 4.71 1.03 1 2 2 2 4 3 52.171 52.276 3 0.00016297 14749 20211116_3445_TMUAki_TMT10x_S_F6 83.729 66.223 27695000 47465000 224900 57220000 42027000 48864000 32248000 40323000 33198000 34128000 40104000 25788000 44327000 2630900 57560000 40060000 50103000 33251000 41244000 33977000 33586000 38474000 6 6 3 6 6 6 6 6 6 6 6 15210000 25822000 151480 30827000 31142000 38580000 22075000 22538000 18250000 18811000 22072000 14163000 24113000 1599700 31211000 29640000 38464000 22747000 23613000 18869000 18526000 21174000 3 3 2 3 3 3 3 3 3 3 3 12484000 21643000 73424 26392000 10885000 10285000 10173000 17786000 14948000 15316000 18032000 11624000 20213000 1031200 26348000 10420000 11639000 10504000 17631000 15108000 15060000 17300000 3 3 1 3 3 3 3 3 3 3 3 3702600000 2046200000 1656500000 5776 1171 5384 30938;30939;30940;30941;30942;30943;30944 36896;36897;36898;36899;36900;36901 36901 6 FNEEHIPDSPFVVPVASPSGDAR Unmodified 2466.1816 0.18155278 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 3.78 1.31 2 2 2 2 1 4 5 66.435 66.293 3 1.4386E-28 21489 20211116_3442_TMUAki_TMT10x_S_F4 177.03 162.03 37157000 65440000 426850 60293000 42792000 52288000 43602000 40351000 36561000 39851000 48564000 34599000 61043000 3282000 61753000 41069000 53493000 43967000 41614000 37929000 38942000 46477000 21 21 13 21 21 21 21 21 21 21 21 13656000 23480000 116280 22882000 14796000 27280000 16848000 14983000 14061000 14254000 17361000 12716000 21907000 1059800 23451000 14243000 27244000 16896000 15832000 14544000 13951000 16645000 8 8 4 8 8 8 8 8 8 8 8 23501000 41960000 310570 37412000 27996000 25008000 26754000 25369000 22500000 25598000 31203000 21884000 39136000 2222200 38302000 26827000 26249000 27071000 25782000 23385000 24991000 29831000 13 13 9 13 13 13 13 13 13 13 13 11811000000 5103500000 6707800000 5777 755 5385 30945;30946;30947;30948;30949;30950;30951;30952;30953 36902;36903;36904;36905;36906;36907;36908;36909;36910;36911;36912;36913;36914;36915;36916;36917;36918;36919;36920;36921;36922 36914 21 FNEVAAQYSEDK Unmodified 1399.6256 0.62557424 3222 Q9Y237;Q9Y237-2;Q9Y237-3 PIN4 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 yes no 0 0 0 0 By matching By MS/MS 3.5 0.5 1 1 1 1 52.089 52.065 3 0.027917 15688 20211116_3442_TMUAki_TMT10x_S_F4 46.318 34.525 2473400 4396200 30555 4948200 2444200 2130600 2299300 3068700 3602300 2595100 3850200 2303200 4104200 233130 4966900 2341800 2365400 2380200 3058500 3616500 2554000 3706500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2473400 4396200 30555 4948200 2444200 2130600 2299300 3068700 3602300 2595100 3850200 2303200 4104200 233130 4966900 2341800 2365400 2380200 3058500 3616500 2554000 3706500 1 1 1 1 1 1 1 1 1 1 1 404660000 98870000 305800000 5778 3222 5386 30954;30955 36923 36923 1 FNFGEEEFK Unmodified 1145.5029 0.50293991 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 1.12 2 2 2 2 4 4 64.283 64.156 2 6.126E-06 21908 20211116_3430_TMUAki_TMT10x_P_F3 176.38 147.64 89430000 132830000 170940 195220000 84624000 89864000 74124000 44051000 44917000 47041000 85798000 83264000 124180000 6874300 193170000 80847000 97016000 74832000 47189000 48424000 45820000 81501000 9 9 2 9 9 9 9 9 9 9 9 59417000 86470000 170940 128320000 64861000 74426000 53723000 30189000 30347000 31252000 56867000 55320000 80842000 4714500 127140000 61893000 78150000 54352000 32959000 32837000 30478000 54036000 6 6 2 6 6 6 6 6 6 6 6 30013000 46358000 0 66905000 19763000 15438000 20401000 13861000 14570000 15789000 28932000 27944000 43334000 2159900 66033000 18954000 18866000 20479000 14231000 15587000 15341000 27465000 3 3 0 3 3 3 3 3 3 3 3 4535900000 2552500000 1983400000 5779 2334 5387 30956;30957;30958;30959;30960;30961;30962;30963 36924;36925;36926;36927;36928;36929;36930;36931;36932;36933 36926 10 FNFGEEEFKFPPK Unmodified 1614.7718 0.77184455 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 1 By MS/MS By MS/MS 6.55 1.33 1 4 9 9 18 17 32 26 67.576 67.613 3;4 1.9226E-14 23794 20211116_3446_TMUAki_TMT10x_S_F7 162.72 137.93 999440000 1648400000 18000000 1513300000 1019000000 1298600000 1028300000 674850000 661560000 714550000 1061300000 930690000 1537600000 97356000 1550200000 978220000 1322100000 1031200000 718810000 703260000 696230000 1011400000 89 89 61 89 89 89 89 89 89 89 89 565030000 900360000 10897000 840330000 511380000 862880000 570080000 375170000 371760000 395220000 585530000 526180000 839910000 55411000 861850000 492420000 866700000 569050000 406660000 394460000 385160000 558220000 48 48 34 48 48 48 48 48 48 48 48 434410000 748010000 7102500 673000000 507610000 435700000 458220000 299680000 289800000 319330000 475800000 404520000 697690000 41945000 688320000 485800000 455450000 462160000 312150000 308800000 311060000 453230000 41 41 27 41 41 41 41 41 41 41 41 40354000000 20030000000 20324000000 5780 2334 5388 30964;30965;30966;30967;30968;30969;30970;30971;30972;30973;30974;30975;30976;30977;30978;30979;30980;30981;30982;30983;30984;30985;30986;30987;30988;30989;30990;30991;30992;30993;30994;30995;30996;30997;30998;30999;31000;31001;31002;31003;31004;31005;31006;31007;31008;31009;31010;31011;31012;31013;31014;31015;31016;31017;31018;31019;31020;31021 36934;36935;36936;36937;36938;36939;36940;36941;36942;36943;36944;36945;36946;36947;36948;36949;36950;36951;36952;36953;36954;36955;36956;36957;36958;36959;36960;36961;36962;36963;36964;36965;36966;36967;36968;36969;36970;36971;36972;36973;36974;36975;36976;36977;36978;36979;36980;36981;36982;36983;36984;36985;36986;36987;36988;36989;36990;36991;36992;36993;36994;36995;36996;36997;36998;36999;37000;37001;37002;37003;37004;37005;37006;37007;37008;37009;37010;37011;37012;37013;37014;37015;37016;37017;37018;37019;37020;37021;37022;37023;37024;37025;37026;37027;37028;37029;37030;37031 37018 98 FNFGEEEFKFPPKDGFVALSK Unmodified 2432.2052 0.20524833 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 2 By MS/MS 8 0 1 1 76.813 76.822 4 8.5267E-11 25068 20211116_3436_TMUAki_TMT10x_P_F8 119.83 99.011 2077400 4440200 47436 1932800 3284200 15780000 6090500 18128000 13292000 11350000 6939300 1934600 4133800 233340 2356000 3222400 15274000 6254100 18110000 12982000 11364000 6890700 1 1 1 1 1 1 1 1 1 1 1 2077400 4440200 47436 1932800 3284200 15780000 6090500 18128000 13292000 11350000 6939300 1934600 4133800 233340 2356000 3222400 15274000 6254100 18110000 12982000 11364000 6890700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 984820000 984820000 0 5781 2334 5389 31022 37032 37032 1 FNFLEQAFDK Unmodified 1257.603 0.60298831 2430 Q96CX2 KCTD12 BTB/POZ domain-containing protein KCTD12 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 78.922 78.932 2 8.7097E-09 25340 20211116_3447_TMUAki_TMT10x_S_F8 141.1 103.01 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5782 2430 5390 31023;31024 37033;37034 37034 2 FNFLNPNDPYHAYYR Unmodified 1929.8798 0.87983187 1810 Q15459;Q15459-2 SF3A1 Splicing factor 3A subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 64.809 64.688 3 3.8563E-30 21610 20211116_3429_TMUAki_TMT10x_P_F2 207.8 198.05 47649000 81596000 427550 81901000 56222000 91525000 60131000 58962000 55925000 57019000 61781000 44367000 76139000 4281500 83675000 54021000 91914000 60659000 61534000 57286000 55768000 59417000 11 11 5 11 11 11 11 11 11 11 11 34729000 58944000 278840 58834000 39705000 76991000 44862000 42810000 41506000 42187000 44514000 32337000 55000000 3066500 60299000 38208000 76545000 45132000 45232000 42478000 41228000 42848000 7 7 2 7 7 7 7 7 7 7 7 12920000 22652000 148710 23067000 16518000 14534000 15269000 16152000 14420000 14832000 17268000 12030000 21138000 1215000 23376000 15813000 15369000 15527000 16301000 14808000 14540000 16569000 4 4 3 4 4 4 4 4 4 4 4 7955600000 5095600000 2860000000 5783 1810 5391 31025;31026;31027;31028;31029;31030 37035;37036;37037;37038;37039;37040;37041;37042;37043;37044;37045;37046 37036 12 FNGAHIPGSPFK Unmodified 1270.6459 0.64585618 1703 Q14315;Q14315-2 FLNC Filamin-C yes no 0 0 0 0 By MS/MS By matching 2.5 0.5 1 1 1 1 51.309 50.999 3 0.0056962 16012 20211116_3429_TMUAki_TMT10x_P_F2 61.235 47.329 6671700 9852200 870810 12478000 11491000 17155000 9548200 11004000 9599800 8992500 9233300 6218500 9203000 1432200 12614000 11022000 17049000 9788300 11438000 9750900 8865400 8918400 2 2 2 2 2 2 2 2 2 2 2 6671700 9852200 870810 12478000 11491000 17155000 9548200 11004000 9599800 8992500 9233300 6218500 9203000 1432200 12614000 11022000 17049000 9788300 11438000 9750900 8865400 8918400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 298130000 211380000 86745000 5784 1703 5392 31031;31032 37047;37048 37047 2 FNGIVEDFNYGTLLR Unmodified 1756.8784 0.87843489 2692 Q9BVG4 PBDC1 Protein PBDC1 yes yes 0 0 0 0 By MS/MS 7 0 1 1 79.044 79.093 2 1.9317E-09 27868 20211116_3446_TMUAki_TMT10x_S_F7 112.15 83.067 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5785 2692 5393 31033 37049 37049 1 FNGTHIPGSPFK Unmodified 1300.6564 0.65642086 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 2.25 0.433 3 1 2 2 50.517 50.265 3 0.00016842 15683 20211116_3429_TMUAki_TMT10x_P_F2 86.911 72.22 17485000 30319000 100450 34161000 29314000 32453000 18498000 30142000 28092000 25304000 26975000 16281000 28305000 1604600 34553000 27835000 33115000 19626000 30618000 28120000 24913000 26057000 6 6 4 6 6 6 6 6 6 6 6 7826700 13063000 26451 15320000 20223000 24053000 10741000 14398000 12902000 11233000 11805000 7287000 12198000 765880 15600000 19149000 23748000 11457000 15032000 12992000 11101000 11422000 2 2 1 2 2 2 2 2 2 2 2 9658800 17256000 73999 18841000 9090900 8400300 7757700 15743000 15191000 14072000 15170000 8993600 16108000 838670 18953000 8686200 9366700 8168800 15586000 15128000 13812000 14635000 4 4 3 4 4 4 4 4 4 4 4 1071400000 602930000 468480000 5786 755 5394 31034;31035;31036;31037 37050;37051;37052;37053;37054;37055;37056 37051 7 FNHWELK Unmodified 972.48175 0.48175096 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 0 By MS/MS 7 0 1 1 47.528 48.011 3 0.017581 15030 20211116_3446_TMUAki_TMT10x_S_F7 66.351 37.624 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5787 542 5395 31038 37057 37057 1 FNLLREENEGYAK Unmodified 1581.7787 0.77872084 2258 Q8NI27 THOC2 THO complex subunit 2 yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 51.001 51.198 3 0.0018609 15140 20211116_3433_TMUAki_TMT10x_P_F5 70.889 57.226 3372300 5517900 61436 7001100 7858400 8484500 4978000 4692400 4422600 3796500 4779600 3140400 5154300 399670 7059700 7466300 8466700 5182900 4935500 4536300 3744800 4599600 1 1 1 1 1 1 1 1 1 1 1 3372300 5517900 61436 7001100 7858400 8484500 4978000 4692400 4422600 3796500 4779600 3140400 5154300 399670 7059700 7466300 8466700 5182900 4935500 4536300 3744800 4599600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 274840000 274840000 0 5788 2258 5396 31039;31040 37058;37059 37059 2 FNLTGLNEQVPHYR Unmodified 1686.8478 0.84780346 1412 P67870 CSNK2B Casein kinase II subunit beta yes yes 0 0 0 0 By MS/MS By MS/MS 6.17 2.41 1 1 2 2 2 4 54.937 55.267 3 2.0796E-33 15714 20211116_3447_TMUAki_TMT10x_S_F8 227.63 201.98 14200000 24267000 542610 24681000 18978000 26011000 16400000 22961000 23471000 21689000 20669000 13225000 22645000 1749900 25169000 18165000 26348000 16989000 23461000 23469000 21235000 20025000 4 4 4 4 4 4 4 4 4 4 4 6535500 11331000 185550 11736000 10892000 18927000 9221300 11792000 11878000 11364000 9912200 6086600 10575000 775780 12052000 10413000 18678000 9523100 12337000 11898000 11117000 9622800 2 2 2 2 2 2 2 2 2 2 2 7664100 12935000 357070 12944000 8086100 7083800 7178800 11169000 11594000 10325000 10756000 7138700 12070000 974090 13117000 7752200 7669800 7465900 11125000 11572000 10118000 10402000 2 2 2 2 2 2 2 2 2 2 2 7829100000 3866500000 3962600000 5789 1412 5397 31041;31042;31043;31044;31045;31046 37060;37061;37062;37063;37064;37065 37065 6 FNLTYVSHDGDDK Unmodified 1509.6736 0.67358707 819 P26639;P26639-2 TARS Threonine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS 4 0 1 1 48.71 48.857 3 0.091244 13923 20211116_3431_TMUAki_TMT10x_P_F4 35.726 26.997 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5790 819 5398 31047 37066 37066 1 FNPDIFSPGVR Unmodified 1247.6299 0.62987176 312 O75153 CLUH Clustered mitochondria protein homolog yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 64.757 65.01 2 1.0445E-11 20233 20211116_3436_TMUAki_TMT10x_P_F8 177.58 149.95 17401000 27873000 53608 27594000 19818000 27496000 18643000 17876000 15489000 16673000 20651000 16201000 26007000 1376300 28168000 18966000 27801000 18874000 18625000 16079000 16333000 19762000 3 3 1 3 3 3 3 3 3 3 3 11895000 19228000 53608 18435000 14105000 22409000 13559000 12869000 11068000 11784000 14307000 11075000 17938000 958520 18922000 13507000 22370000 13705000 13534000 11483000 11554000 13701000 2 2 1 2 2 2 2 2 2 2 2 5506700 8645200 0 9159100 5712900 5086600 5084000 5007100 4421700 4889100 6344600 5126900 8068800 417790 9246600 5459300 5431300 5169300 5091400 4595600 4779800 6060900 1 1 0 1 1 1 1 1 1 1 1 2078800000 1426600000 652120000 5791 312 5399 31048;31049;31050 37067;37068;37069 37068 3 FNPFVTSDR Unmodified 1081.5193 0.51925868 1306 P61254;Q9UNX3 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.22 1.31 1 2 2 2 2 5 4 54.648 54.883 2 1.1311E-10 15353 20211116_3434_TMUAki_TMT10x_P_F6 224.86 175.42 70789000 112480000 144270 139420000 81039000 85472000 61718000 77771000 75916000 69257000 89122000 65909000 105060000 5710500 139520000 77198000 90228000 64053000 79206000 77079000 67991000 85564000 8 8 3 8 8 8 8 8 8 8 8 25656000 40438000 88812 47111000 47431000 54785000 30321000 28803000 26922000 25690000 30989000 23889000 37758000 2496800 47704000 45053000 54754000 31545000 30503000 27681000 25219000 29768000 3 3 2 3 3 3 3 3 3 3 3 45133000 72046000 55457 92307000 33608000 30687000 31397000 48968000 48995000 43567000 58133000 42020000 67302000 3213700 91816000 32145000 35474000 32508000 48703000 49398000 42772000 55795000 5 5 1 5 5 5 5 5 5 5 5 12532000000 6407800000 6124000000 5792 1306 5400 31051;31052;31053;31054;31055;31056;31057;31058;31059 37070;37071;37072;37073;37074;37075;37076;37077;37078;37079 37072 10 FNPIETFLLGSCASDR Unmodified 1825.8669 0.86688392 2960 Q9NV06 DCAF13 DDB1- and CUL4-associated factor 13 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 80.434 80.439 2 1.5496E-28 26598 20211116_3436_TMUAki_TMT10x_P_F8 182.02 155.23 1600600 2364800 0 2077300 1257900 2298400 1436900 999080 1063800 1275100 1597100 1490100 2205500 92544 2142800 1208400 2298600 1436600 1089600 1117500 1234000 1524100 1 1 0 1 1 1 1 1 1 1 1 1600600 2364800 0 2077300 1257900 2298400 1436900 999080 1063800 1275100 1597100 1490100 2205500 92544 2142800 1208400 2298600 1436600 1089600 1117500 1234000 1524100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 619500000 619500000 0 5793 2960 5401 31060;31061 37080;37081 37080 2 FNRDVDETISWIK Unmodified 1621.81 0.81002097 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 67.03 66.963 3 0.0025881 20825 20211116_3445_TMUAki_TMT10x_S_F6 65.565 43.09 3802400 6753100 122080 7437200 4671300 3329800 3979300 3437400 2810500 3164400 5363200 3541400 6304000 441200 7477400 4469000 3648000 4036400 3481400 3001000 3101800 5094600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3802400 6753100 122080 7437200 4671300 3329800 3979300 3437400 2810500 3164400 5363200 3541400 6304000 441200 7477400 4469000 3648000 4036400 3481400 3001000 3101800 5094600 1 1 1 1 1 1 1 1 1 1 1 311060000 0 311060000 5794 1663 5402 31062;31063 37082;37083 37083 2 FNSLNELVDYHR Unmodified 1505.7263 0.72629134 1388 P62993;P62993-2 GRB2 Growth factor receptor-bound protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 57.698 57.999 3 3.8434E-15 17890 20211116_3433_TMUAki_TMT10x_P_F5 152.47 129.23 13740000 22991000 98594 23169000 20156000 22035000 17023000 16474000 14684000 15477000 18708000 12794000 21454000 1302900 23607000 19253000 22393000 17358000 17001000 15184000 15157000 17922000 5 5 4 5 5 5 5 5 5 5 5 7658500 12598000 87593 13075000 13157000 17035000 10971000 9463800 7820300 8046100 10425000 7131500 11757000 793580 13365000 12566000 16939000 11145000 9961800 8186100 7916700 9975700 3 3 3 3 3 3 3 3 3 3 3 6081900 10393000 11001 10094000 6999500 5000300 6051900 7010700 6863800 7431100 8283100 5662800 9696800 509290 10242000 6687100 5453300 6213400 7039100 6997600 7240200 7946500 2 2 1 2 2 2 2 2 2 2 2 2568300000 1521800000 1046500000 5795 1388 5403 31064;31065;31066;31067;31068;31069 37084;37085;37086;37087;37088;37089 37084 6 FNTGPVGK Unmodified 818.42865 0.42865276 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 38.769 39.429 2 0.0036939 9624 20211116_3447_TMUAki_TMT10x_S_F8 96.948 72.612 218140 355780 1988.9 363830 222900 175730 251920 187090 196640 192770 292760 203130 332010 20006 367780 214580 190880 252300 189820 205880 188040 279440 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 218140 355780 1988.9 363830 222900 175730 251920 187090 196640 192770 292760 203130 332010 20006 367780 214580 190880 252300 189820 205880 188040 279440 1 1 1 1 1 1 1 1 1 1 1 15979000 0 15979000 5796 1997 5404 31070;31071 37090;37091 37091 2 FNTTSVIK Unmodified 908.49673 0.49673232 1757 Q15029;Q15029-2;Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 By MS/MS 8 0 1 1 47.468 47.572 2 0.0046703 13145 20211116_3436_TMUAki_TMT10x_P_F8 92.051 52.006 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5797 1757 5405 31072 37092 37092 1 FNVGEDCPVFDGLFEFCQLSTGGSVAGAVK Unmodified 3206.4689 0.46888595 2362 Q92769;Q92769-3 HDAC2 Histone deacetylase 2 yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 4 2 2 4 82.056 82.059 3;4 6.1134E-16 26675 20211116_3444_TMUAki_TMT10x_S_F5 119.89 113.6 4069900 6498900 18867 5939500 4344800 5663400 4751500 3565200 3296600 4076700 4910100 3789200 6062100 300430 6094700 4173500 5739400 4753400 3746100 3474700 3960400 4686700 4 4 2 4 4 4 4 4 4 4 4 2247500 3559400 0 3042400 1986500 3751900 2336700 1924300 1694200 2371600 2706700 2092200 3319300 130950 3150900 1910200 3737300 2332000 2062100 1787600 2297800 2579700 1 1 0 1 1 1 1 1 1 1 1 1822500 2939600 18867 2897100 2358300 1911500 2414800 1640900 1602500 1705100 2203400 1697000 2742800 169480 2943800 2263300 2002000 2421300 1683900 1687100 1662600 2107000 3 3 2 3 3 3 3 3 3 3 3 917700000 450250000 467450000 5798 2362 5406 31073;31074;31075;31076;31077;31078 37093;37094;37095;37096 37096 4 FNVLQYVVPEVK Unmodified 1433.7919 0.79185171 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 2 4 3 3 79.389 79.365 2;3 1.2121E-11 27481 20211116_3429_TMUAki_TMT10x_P_F2 167.09 137.94 22841000 34795000 0 36827000 19743000 29160000 25363000 14767000 13658000 17411000 23485000 21265000 32475000 1622200 37311000 19057000 29856000 25070000 15819000 14756000 16896000 22351000 3 3 0 3 3 3 3 3 3 3 3 14420000 21063000 0 22399000 12165000 20816000 15347000 9431000 8349300 10517000 13879000 13425000 19659000 1020000 22732000 11735000 21048000 15185000 10196000 8996400 10227000 13217000 2 2 0 2 2 2 2 2 2 2 2 8421100 13733000 0 14428000 7577500 8343500 10015000 5335700 5309200 6894100 9606500 7840200 12817000 602130 14579000 7321500 8807500 9885600 5623400 5759600 6668900 9134000 1 1 0 1 1 1 1 1 1 1 1 4825500000 3192900000 1632600000 5799 1684 5407 31079;31080;31081;31082;31083;31084 37097;37098;37099;37100 37097 4 FNVLYDR Unmodified 925.46577 0.46576654 2062 Q7L5N1 COPS6 COP9 signalosome complex subunit 6 yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 51.983 52.099 2 0.072654 14352 20211116_3434_TMUAki_TMT10x_P_F6 60.59 33.988 6255900 10434000 124000 10795000 10087000 10050000 7161500 8213000 7500800 6873300 8719100 5825800 9737300 687880 10976000 9605500 10243000 7427600 8403100 7659100 6768000 8373300 2 2 2 2 2 2 2 2 2 2 2 3031900 5016500 119350 5313000 6000100 7295500 3982300 3806700 3749600 3345000 3958200 2823900 4682100 404170 5428800 5709700 7231500 4137800 4032600 3832200 3285900 3811900 1 1 1 1 1 1 1 1 1 1 1 3224000 5417300 4653.6 5481900 4086500 2754500 3179100 4406400 3751200 3528300 4760900 3001900 5055200 283710 5547100 3895800 3011500 3289900 4370500 3827000 3482100 4561400 1 1 1 1 1 1 1 1 1 1 1 388640000 262430000 126210000 5800 2062 5408 31085;31086 37101 37101 1 FNVPVSLESK Unmodified 1118.5972 0.59717465 1445 P82979 SARNP SAP domain-containing ribonucleoprotein yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 61.003 61.715 2 1.3204E-08 20594 20211116_3446_TMUAki_TMT10x_S_F7 128.81 107.3 6240700 10460000 205450 11024000 12866000 17857000 9953800 10349000 10338000 9664400 10025000 5812200 9762300 801660 11309000 12276000 17601000 10261000 10881000 10490000 9467000 9680600 1 1 1 1 1 1 1 1 1 1 1 6240700 10460000 205450 11024000 12866000 17857000 9953800 10349000 10338000 9664400 10025000 5812200 9762300 801660 11309000 12276000 17601000 10261000 10881000 10490000 9467000 9680600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 567730000 567730000 0 5801 1445 5409 31087;31088 37102;37103 37103 2 FNVWDTAGQEK Unmodified 1293.599 0.59896556 1368 P62826 RAN GTP-binding nuclear protein Ran yes yes 0 0 0 0 By MS/MS By MS/MS 5.6 1.08 3 4 4 4 8 7 59.559 59.72 2;3 8.3387E-48 17382 20211116_3434_TMUAki_TMT10x_P_F6 307.82 197.6 117550000 188090000 718380 267560000 178690000 127000000 130350000 56479000 56229000 71258000 149440000 109440000 175810000 9908600 265240000 170080000 136470000 132450000 61425000 63754000 68985000 141270000 16 16 6 16 16 16 16 16 16 16 16 48124000 73481000 439940 105090000 140720000 97304000 92076000 22714000 22159000 28705000 58095000 44806000 68684000 4975400 104860000 133680000 97931000 93776000 27038000 26878000 27788000 54929000 7 7 3 7 7 7 7 7 7 7 7 69424000 114610000 278440 162470000 37979000 29699000 38275000 33764000 34070000 42553000 91343000 64637000 107120000 4933200 160380000 36398000 38536000 38678000 34387000 36877000 41197000 86342000 9 9 3 9 9 9 9 9 9 9 9 17370000000 11683000000 5686900000 5802 1368 5410 31089;31090;31091;31092;31093;31094;31095;31096;31097;31098;31099;31100;31101;31102;31103 37104;37105;37106;37107;37108;37109;37110;37111;37112;37113;37114;37115;37116;37117;37118;37119;37120;37121 37108 18 FNYGFEYLGVQDK Unmodified 1578.7355 0.73545904 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 4 4 4 4 75.134 75.204 2;3 8.5953E-24 23843 20211116_3434_TMUAki_TMT10x_P_F6 184.34 148.69 34587000 58470000 497370 54303000 41644000 53152000 44458000 36105000 35032000 37043000 43539000 32206000 54543000 3265000 55675000 40020000 53836000 44657000 37597000 36353000 36139000 41737000 9 9 5 9 9 9 9 9 9 9 9 16682000 27442000 276860 26231000 18415000 32867000 21104000 17575000 17141000 18636000 20659000 15534000 25602000 1546400 26945000 17734000 32730000 21144000 18673000 17736000 18157000 19820000 4 4 2 4 4 4 4 4 4 4 4 17905000 31028000 220510 28072000 23229000 20285000 23354000 18529000 17891000 18407000 22880000 16672000 28942000 1718600 28730000 22287000 21106000 23513000 18924000 18617000 17982000 21917000 5 5 3 5 5 5 5 5 5 5 5 4242000000 2098400000 2143600000 5803 1695 5411 31104;31105;31106;31107;31108;31109;31110;31111 37122;37123;37124;37125;37126;37127;37128;37129;37130;37131;37132 37123 11 FPAPGKPGNYQYTVFLR Unmodified 1954.0101 0.010117761 3109 Q9UGP8 SEC63 Translocation protein SEC63 homolog yes yes 0 0 0 1 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 64.377 64.389 3 1.12E-10 19751 20211116_3445_TMUAki_TMT10x_S_F6 121.72 111.58 3714000 6133400 54755 7672000 4360000 3502300 3891200 3367200 3201800 3544300 4805100 3458500 5728900 367990 7655700 4172100 3822000 3950100 3435600 3344300 3454200 4585600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3714000 6133400 54755 7672000 4360000 3502300 3891200 3367200 3201800 3544300 4805100 3458500 5728900 367990 7655700 4172100 3822000 3950100 3435600 3344300 3454200 4585600 1 1 1 1 1 1 1 1 1 1 1 828610000 0 828610000 5804 3109 5412 31112;31113;31114 37133;37134 37134 2 FPDENFTLK Unmodified 1109.5393 0.53932542 871 P30405;P30405-2 PPIF Peptidyl-prolyl cis-trans isomerase F, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 64.208 64.261 2 0.00023417 20444 20211116_3433_TMUAki_TMT10x_P_F5 133.13 90.313 63387000 100270000 651390 110830000 77650000 95394000 70591000 74350000 77870000 70529000 80596000 59021000 93603000 5690400 112090000 74292000 97661000 72198000 76542000 78998000 69040000 77663000 10 10 6 10 10 10 10 10 10 10 10 37351000 57513000 218900 63723000 54572000 71649000 48082000 44171000 46671000 41105000 46485000 34778000 53689000 3402300 64687000 52168000 71885000 49067000 46205000 47535000 40271000 44848000 6 6 3 6 6 6 6 6 6 6 6 26036000 42758000 432490 47112000 23077000 23745000 22510000 30178000 31199000 29424000 34111000 24244000 39914000 2288200 47405000 22124000 25776000 23131000 30336000 31462000 28768000 32816000 4 4 3 4 4 4 4 4 4 4 4 3038600000 1800600000 1238000000 5805 871 5413 31115;31116;31117;31118;31119 37135;37136;37137;37138;37139;37140;37141;37142;37143;37144 37138 10 FPDLTVELNR Unmodified 1202.6295 0.62953741 1183 P52701;P52701-3;P52701-4;P52701-2 MSH6 DNA mismatch repair protein Msh6 yes no 0 0 0 0 By MS/MS 5 0 2 2 67.9 68.001 2 0.00011279 22021 20211116_3433_TMUAki_TMT10x_P_F5 95.775 68.645 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5806 1183 5414 31120;31121 37145;37146 37146 2 FPDSVEELR Unmodified 1090.5295 0.52948901 1829 Q15785 TOMM34 Mitochondrial import receptor subunit TOM34 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 53.783 53.534 2 0.00037493 17094 20211116_3429_TMUAki_TMT10x_P_F2 90.657 56.86 9401200 14566000 152710 17192000 12332000 14036000 9321300 13104000 12897000 11517000 13139000 8754400 13602000 930550 17306000 11756000 14473000 9723000 13322000 12972000 11314000 12667000 3 3 2 3 3 3 3 3 3 3 3 3928200 5647900 110850 7068600 7877300 9307000 4890800 5268100 5269600 4987500 5271200 3658400 5275400 484290 7144200 7484700 9252500 5128800 5551700 5344400 4882600 5084900 1 1 1 1 1 1 1 1 1 1 1 5473100 8918600 41858 10124000 4454400 4729100 4430500 7835500 7627000 6529900 7867400 5096000 8326500 446260 10162000 4270900 5220300 4594300 7770800 7627800 6431200 7582000 2 2 1 2 2 2 2 2 2 2 2 569050000 217760000 351290000 5807 1829 5415 31122;31123;31124;31125 37147;37148;37149;37150 37147 4 FPEDGPELEEILTQLATADAR Unmodified 2314.1329 0.13287125 3013 Q9NY33;Q9NY33-4;Q9NY33-2 DPP3 Dipeptidyl peptidase 3 yes no 0 0 0 0 By MS/MS 1 0 1 1 82.389 82.389 3 4.961E-11 27258 20211116_3428_TMUAki_TMT10x_P_F1 119.37 103.42 1449500 2349700 48778 2219500 1332600 2794000 1699600 1380400 1308900 1498300 1865600 1350000 2192000 164000 2282000 1289900 2779200 1692600 1478400 1368400 1458500 1782500 1 1 1 1 1 1 1 1 1 1 1 1449500 2349700 48778 2219500 1332600 2794000 1699600 1380400 1308900 1498300 1865600 1350000 2192000 164000 2282000 1289900 2779200 1692600 1478400 1368400 1458500 1782500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 153770000 153770000 0 5808 3013 5416 31126 37151 37151 1 FPEHELTFDPQR Unmodified 1514.7154 0.7153923 3301 Q9Y4L1;Q9Y4L1-2 HYOU1 Hypoxia up-regulated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 49.641 49.649 3 4.8821E-12 15827 20211116_3430_TMUAki_TMT10x_P_F3 166.04 142.01 8802400 14916000 129260 16351000 10865000 10809000 8971800 12449000 11051000 10914000 12595000 8196300 13924000 800150 16496000 10373000 11390000 9263900 12528000 11206000 10722000 12102000 6 6 4 6 6 6 6 6 6 6 6 2401200 3871800 57119 4329900 4507100 5506400 3478400 3241600 3188400 3073400 3510000 2236200 3614500 281810 4402500 4299200 5486100 3573100 3405100 3267800 3008600 3376000 2 2 2 2 2 2 2 2 2 2 2 6401200 11045000 72143 12021000 6358200 5302500 5493400 9206900 7862700 7840400 9084800 5960100 10309000 518340 12094000 6074100 5904000 5690700 9123000 7938700 7713700 8725900 4 4 2 4 4 4 4 4 4 4 4 2453400000 1344600000 1108800000 5809 3301 5417 31127;31128;31129;31130;31131;31132 37152;37153;37154;37155;37156;37157;37158 37152 7 FPFELVK Unmodified 878.49019 0.49019038 1140;1518 P50570;P50570-3;P50570-2;P50570-5;P50570-4;Q05193;Q05193-5;Q05193-3;Q05193-2 DNM2;DNM1 Dynamin-2;Dynamin-1 no no 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 75.618 75.561 2 0.054472 23928 20211116_3447_TMUAki_TMT10x_S_F8 66.682 0 15098000 25695000 29393 23420000 18411000 22000000 17171000 16452000 14864000 15541000 18757000 14058000 23968000 1319900 24032000 17623000 22375000 17411000 16980000 15360000 15216000 17974000 3 3 2 3 3 3 3 3 3 3 3 6224200 10823000 8918 10031000 7881900 13518000 8130900 7322500 6206500 6804800 7769800 5795400 10096000 547560 10342000 7564300 13417000 8174900 7742200 6453800 6667200 7446900 1 1 1 1 1 1 1 1 1 1 1 8873400 14872000 20475 13389000 10529000 8481900 9040100 9129900 8657200 8736700 10987000 8262100 13872000 772300 13690000 10059000 8958000 9235700 9238200 8906600 8548900 10527000 2 2 1 2 2 2 2 2 2 2 2 1741700000 915650000 826060000 5810 1140;1518 5418 31133;31134;31135 37159;37160 37160 2 FPFNTPK Unmodified 849.43849 0.43848916 554 P08243;P08243-2;P08243-3 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes no 0 0 0 0 By MS/MS 2 0 1 1 55.837 55.588 2 0.019233 17867 20211116_3429_TMUAki_TMT10x_P_F2 84.097 15.785 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5811 554 5419 31136 37161 37161 1 FPGQLNADLR Unmodified 1129.588 0.58800695 1418;1668;2689;539;1640;488;2673;1889 Q13509;Q13509-2;P07437;A6NNZ2;P68371;Q13885;Q3ZCM7;Q9BVA1;P04350;Q9BUF5 TUBB3;TUBB;TUBB4B;TUBB2A;TUBB8;TUBB2B;TUBB4A;TUBB6 Tubulin beta-3 chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-6 chain no no 0 0 0 0 By MS/MS By MS/MS 5.93 1.49 1 2 2 3 4 2 7 7 51.507 51.716 2 9.3371E-09 14834 20211116_3434_TMUAki_TMT10x_P_F6 175.91 124.13 128090000 217050000 102370 237140000 199690000 210160000 131420000 195340000 197370000 166800000 191650000 119250000 202610000 8923800 240100000 189650000 215420000 138920000 198500000 197700000 164080000 185050000 17 17 4 17 17 17 17 17 17 17 17 53831000 87522000 72770 99679000 125850000 148690000 76451000 80141000 87128000 67182000 77788000 50117000 81712000 4830600 101560000 119390000 146920000 80461000 84553000 87840000 66147000 75328000 8 8 2 8 8 8 8 8 8 8 8 74257000 129530000 29602 137460000 73845000 61462000 54972000 115200000 110240000 99619000 113860000 69132000 120900000 4093100 138530000 70260000 68509000 58458000 113950000 109860000 97935000 109720000 9 9 2 9 9 9 9 9 9 9 9 29750000000 16496000000 13254000000 5812 1640;539;1418;1668;1889;2689;488;2673 5420 31137;31138;31139;31140;31141;31142;31143;31144;31145;31146;31147;31148;31149;31150 37162;37163;37164;37165;37166;37167;37168;37169;37170;37171;37172;37173;37174;37175;37176;37177;37178;37179;37180;37181 37166 20 FPGQLNADLRK Unmodified 1257.683 0.68296996 1418;1668;2689;539;1640;488;2673;1889 Q13509;Q13509-2;P07437;A6NNZ2;P68371;Q13885;Q3ZCM7;Q9BVA1;P04350;Q9BUF5 TUBB3;TUBB;TUBB4B;TUBB2A;TUBB8;TUBB2B;TUBB4A;TUBB6 Tubulin beta-3 chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-6 chain no no 0 0 0 1 By MS/MS By MS/MS 4.87 2.85 3 3 3 2 4 9 6 48.775 48.834 2;3 1.0867E-17 13746 20211116_3436_TMUAki_TMT10x_P_F8 196.88 155.85 261800000 421940000 4744100 534710000 469340000 426810000 271250000 435730000 428170000 362510000 426840000 243790000 394130000 27872000 535910000 445260000 441660000 290350000 440380000 428670000 357060000 411800000 25 25 16 25 25 25 25 25 25 25 25 109640000 169550000 1860000 211220000 343580000 297610000 154570000 175570000 172550000 149490000 171760000 102100000 158370000 13760000 213830000 324780000 295110000 167230000 183890000 174730000 147070000 165720000 11 11 7 11 11 11 11 11 11 11 11 152160000 252380000 2884100 323490000 125770000 129200000 116680000 260160000 255610000 213020000 255080000 141690000 235770000 14111000 322080000 120480000 146550000 123130000 256490000 253950000 209990000 246080000 14 14 9 14 14 14 14 14 14 14 14 38662000000 24000000000 14662000000 5813 1640;539;1418;1668;1889;2689;488;2673 5421 31151;31152;31153;31154;31155;31156;31157;31158;31159;31160;31161;31162;31163;31164;31165 37182;37183;37184;37185;37186;37187;37188;37189;37190;37191;37192;37193;37194;37195;37196;37197;37198;37199;37200;37201;37202;37203;37204;37205;37206;37207;37208;37209;37210;37211;37212;37213 37197 32 FPLDYYSIPFPTPTTPLTGR Unmodified 2282.1623 0.16232089 1685 Q14157;Q14157-1;Q14157-4;Q14157-3;Q14157-5 UBAP2L Ubiquitin-associated protein 2-like yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 2 4 3 3 80.717 80.698 2;3 5.4258E-51 26979 20211116_3431_TMUAki_TMT10x_P_F4 228.17 195.22 17601000 30527000 41874 29969000 20112000 26091000 20815000 12490000 13190000 15601000 20862000 16388000 28483000 957060 30555000 19297000 26514000 20840000 13478000 14025000 15109000 19887000 9 9 3 9 9 9 9 9 9 9 9 9789300 16300000 4701.7 16424000 10135000 17238000 10209000 6346900 7371600 8621900 11728000 9114200 15211000 381190 16758000 9714600 17266000 10264000 7070800 7778100 8326900 11179000 4 4 1 4 4 4 4 4 4 4 4 7811500 14227000 37172 13545000 9976800 8853100 10606000 6143000 5818700 6979200 9133800 7273300 13272000 575870 13797000 9582300 9247500 10577000 6407600 6246600 6781800 8708400 5 5 2 5 5 5 5 5 5 5 5 9141500000 4443900000 4697700000 5814 1685 5422 31166;31167;31168;31169;31170;31171 37214;37215;37216;37217;37218;37219;37220;37221;37222 37215 9 FPLMLDMYELCTPELQEK Unmodified 2256.0516 0.051649504 1220 P54578;P54578-2;P54578-3 USP14 Ubiquitin carboxyl-terminal hydrolase 14 yes no 0 0 0 0 By MS/MS 6 0 1 1 81.423 81.415 3 0.0059964 26305 20211116_3434_TMUAki_TMT10x_P_F6 55.437 46.39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5815 1220 5423 31172 37223 37223 1 FPLTTESAMK Oxidation (M) 1139.5533 0.55326092 1364 P62750 RPL23A 60S ribosomal protein L23a yes yes 0 0 1 0 By MS/MS By MS/MS 6.2 0.4 4 1 2 3 50.363 50.619 2;3 0.00028597 13637 20211116_3434_TMUAki_TMT10x_P_F6 88.364 63.226 5700300 9113000 99151 10711000 4701800 4482000 5020500 6257900 6366400 5717000 7745700 5308300 8509400 551020 10721000 4522300 4990100 5117500 6256800 6466800 5605800 7429300 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5700300 9113000 99151 10711000 4701800 4482000 5020500 6257900 6366400 5717000 7745700 5308300 8509400 551020 10721000 4522300 4990100 5117500 6256800 6466800 5605800 7429300 3 3 3 3 3 3 3 3 3 3 3 474400000 0 474400000 5816 1364 5424 31173;31174;31175;31176;31177 37224;37225;37226;37227;37228 37224 1830 5 FPLTTESAMK Unmodified 1123.5583 0.5583463 1364 P62750 RPL23A 60S ribosomal protein L23a yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 56.432 57.166 2 0.0020878 18739 20211116_3446_TMUAki_TMT10x_S_F7 80.755 65.495 9684000 15952000 0 21050000 17775000 18246000 13104000 7370300 6353300 7093000 11839000 9016500 14904000 873960 21073000 16924000 18517000 13327000 8034200 6953500 6938900 11250000 1 1 0 1 1 1 1 1 1 1 1 9684000 15952000 0 21050000 17775000 18246000 13104000 7370300 6353300 7093000 11839000 9016500 14904000 873960 21073000 16924000 18517000 13327000 8034200 6953500 6938900 11250000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 462650000 462650000 0 5817 1364 5424 31178;31179 37229;37230 37230 2 FPNGVQLSPAEDFVLVAETTMAR Unmodified 2491.2417 0.24171019 2878 Q9HDC9;Q9HDC9-2 APMAP Adipocyte plasma membrane-associated protein yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.957 1 2 2 1 2 4 82.08 82.089 3 2.8694E-37 29085 20211116_3446_TMUAki_TMT10x_S_F7 197.15 163.06 1847800 3302900 13007 3019900 2186700 2714600 2283900 1661600 1808200 1900300 2439800 1720600 3080900 162450 3096300 2099500 2760700 2296900 1749700 1882800 1846100 2334000 4 4 2 4 4 4 4 4 4 4 4 1134000 1979600 9217.1 1947900 1265600 1917600 1267400 1077000 1158500 1159200 1466600 1056000 1847000 103100 1988900 1214000 1936500 1282100 1139900 1194300 1128700 1405300 2 2 1 2 2 2 2 2 2 2 2 713800 1323400 3790.3 1072100 921120 797070 1016500 584640 649740 741110 973170 664590 1233900 59349 1107300 885430 824190 1014800 609830 688530 717360 928770 2 2 1 2 2 2 2 2 2 2 2 660390000 273260000 387120000 5818 2878 5425 31180;31181;31182;31183;31184;31185 37231;37232;37233;37234 37233 4 FPNLVDPWTPHLYAR Unmodified 1824.9311 0.93113916 1754 Q15021 NCAPD2 Condensin complex subunit 1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 75.37 75.183 3 0.0010337 27316 20211116_3441_TMUAki_TMT10x_S_F3 64.136 54.348 3783700 6523600 19443 6086200 5269100 3935000 4367400 4251300 3786500 4091300 4868700 3522800 6085600 306240 6207600 5027800 4148600 4459200 4301700 3916000 4002400 4663100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3783700 6523600 19443 6086200 5269100 3935000 4367400 4251300 3786500 4091300 4868700 3522800 6085600 306240 6207600 5027800 4148600 4459200 4301700 3916000 4002400 4663100 2 2 1 2 2 2 2 2 2 2 2 395620000 0 395620000 5819 1754 5426 31186 37235;37236 37235 2 FPPEASGYLHIGHAK Unmodified 1622.8205 0.82052608 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 0 By MS/MS 8 0 1 1 48.916 49.009 4 9.3784E-07 13747 20211116_3436_TMUAki_TMT10x_P_F8 112.15 99.528 4116500 6697800 63373 7418300 8111400 11267000 5826700 6302500 6265400 5759100 5665100 3833200 6252400 434520 7574600 7722500 11129000 6043300 6642200 6333400 5647000 5483500 3 3 2 3 3 3 3 3 3 3 3 4116500 6697800 63373 7418300 8111400 11267000 5826700 6302500 6265400 5759100 5665100 3833200 6252400 434520 7574600 7722500 11129000 6043300 6642200 6333400 5647000 5483500 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 820410000 820410000 0 5820 542 5427 31187 37237;37238;37239 37237 3 FPPFFTLQPNVDTR Unmodified 1677.8515 0.85149185 2634 Q9BRG1 VPS25 Vacuolar protein-sorting-associated protein 25 yes yes 0 0 0 0 By MS/MS By MS/MS 3.25 0.433 3 1 1 3 79.014 78.949 2;3 2.4009E-05 28828 20211116_3441_TMUAki_TMT10x_S_F3 99.161 85.197 6947700 11724000 39996 11403000 8982400 10624000 8414600 8413300 8007500 8926100 9717700 6468500 10939000 539640 11644000 8594200 10822000 8552300 8681000 8224800 8696500 9321400 3 3 1 3 3 3 3 3 3 3 3 1698500 2477800 0 2486100 1681400 2766900 1826000 1162100 1110600 1286600 2120100 1581000 2312000 87474 2539800 1612400 2765400 1822500 1266200 1197000 1251400 2013900 1 1 0 1 1 1 1 1 1 1 1 5249200 9246400 39996 8916900 7301000 7857400 6588500 7251300 6896900 7639500 7597700 4887500 8626600 452170 9104100 6981900 8056300 6729800 7414800 7027800 7445100 7307500 2 2 1 2 2 2 2 2 2 2 2 2189400000 393990000 1795500000 5821 2634 5428 31188;31189;31190;31191 37240;37241;37242 37242 3 FPQLDSTSFANSR Unmodified 1468.6947 0.69465686 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 7.33 0.667 1 4 4 4 5 58.783 59.114 2;3 1.7941E-22 19478 20211116_3446_TMUAki_TMT10x_S_F7 205.97 179.37 37295000 63437000 370820 63887000 43927000 55462000 40215000 44793000 39164000 41520000 47947000 34726000 59195000 3279100 65017000 42032000 56781000 40954000 45982000 40201000 40686000 45980000 8 8 5 8 8 8 8 8 8 8 8 19728000 33701000 244270 33486000 26758000 40477000 24701000 23983000 19943000 22336000 25235000 18370000 31446000 1902800 34281000 25616000 40433000 25015000 25167000 20684000 21882000 24179000 4 4 3 4 4 4 4 4 4 4 4 17567000 29736000 126560 30401000 17169000 14985000 15515000 20810000 19222000 19185000 22712000 16356000 27749000 1376300 30737000 16416000 16348000 15939000 20815000 19516000 18804000 21801000 4 4 2 4 4 4 4 4 4 4 4 7736600000 4555100000 3181500000 5822 1092 5429 31192;31193;31194;31195;31196;31197;31198;31199;31200 37243;37244;37245;37246;37247;37248;37249;37250;37251;37252 37248 10 FPSGNQGGAGPSQGSGGGTGGSVYTEDNDDDLYG Unmodified 3219.3137 0.31370176 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 64.783 64.461 3 4.354E-08 21946 20211116_3430_TMUAki_TMT10x_P_F3 82.126 82.066 3505400 7105500 12336 7552500 4570500 6801500 4621000 4384500 4737600 4283900 4716800 3263700 6631800 189750 7662000 4382600 6920900 4688200 4576800 4813800 4188100 4550700 8 8 1 8 8 8 8 8 8 8 8 2348600 4827900 0 4919700 3609500 5892400 3867100 2884700 3168200 2797300 2977300 2186600 4505300 95428 5026900 3466300 5875200 3887500 3082200 3246900 2735600 2878000 5 5 0 5 5 5 5 5 5 5 5 1156800 2277600 12336 2632800 960940 909140 753880 1499800 1569400 1486600 1739500 1077100 2126500 94324 2635000 916260 1045800 800760 1494700 1566900 1452500 1672700 3 3 1 3 3 3 3 3 3 3 3 2978100000 1617200000 1361000000 5823 1235 5430 31201;31202;31203;31204 37253;37254;37255;37256;37257;37258;37259;37260 37256 8 FPSLLTHNENMVAK Oxidation (M) 1615.8028 0.8028271 1381 P62906 RPL10A 60S ribosomal protein L10a yes yes 0 0 1 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 51.194 51.482 3 9.1855E-05 14721 20211116_3436_TMUAki_TMT10x_P_F8 89.26 71.858 12833000 22109000 152440 22040000 15913000 18754000 13206000 19133000 19790000 18003000 19089000 11950000 20629000 1179300 22440000 15195000 19316000 13741000 19400000 19820000 17629000 18436000 5 5 3 5 5 5 5 5 5 5 5 4301200 6803500 59203 7240000 7235200 10560000 5933000 6442300 6341000 5559200 6261800 4005100 6350000 426330 7404800 6906600 10460000 6098800 6731400 6430200 5465800 6043000 2 2 1 2 2 2 2 2 2 2 2 8532100 15305000 93235 14800000 8678000 8194000 7273100 12690000 13449000 12444000 12827000 7944600 14279000 752970 15035000 8288400 8856000 7642100 12668000 13390000 12163000 12393000 3 3 2 3 3 3 3 3 3 3 3 1325700000 751020000 574720000 5824 1381 5431 31205;31206;31207;31208 37261;37262;37263;37264;37265 37262 1851 5 FPSLLTHNENMVAK Unmodified 1599.8079 0.80791248 1381 P62906 RPL10A 60S ribosomal protein L10a yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 1 1 1 1 57.974 57.672 3 1.6214E-06 17045 20211116_3436_TMUAki_TMT10x_P_F8 89.992 69.886 3118300 5048900 138540 5914900 3466100 3318200 2826200 4199400 4340400 4321000 4346400 2904500 4714400 392520 5934200 3315800 3560400 2947100 4228800 4349500 4215100 4192600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3118300 5048900 138540 5914900 3466100 3318200 2826200 4199400 4340400 4321000 4346400 2904500 4714400 392520 5934200 3315800 3560400 2947100 4228800 4349500 4215100 4192600 1 1 1 1 1 1 1 1 1 1 1 162890000 0 162890000 5825 1381 5431 31209;31210 37266;37267 37266 2 FPSSGPVTPQPTALTFAK Unmodified 1844.9672 0.96724989 3340 Q9Y679 AUP1 Ancient ubiquitous protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 70.375 70.043 3 2.7521E-06 25264 20211116_3441_TMUAki_TMT10x_S_F3 95.767 70.912 10536000 17512000 203170 16381000 11220000 11783000 11682000 8161500 7620800 8777900 11688000 9811300 16337000 1057600 16723000 10781000 12206000 11700000 8499300 8074900 8547500 11149000 3 3 2 3 3 3 3 3 3 3 3 3702600 5490100 114290 5173600 3584200 5456500 3890300 2798100 2709300 2916400 3888800 3448400 5121600 411830 5304500 3451400 5481500 3893500 2982600 2849700 2843500 3714900 1 1 1 1 1 1 1 1 1 1 1 6833200 12022000 88874 11208000 7635900 6326600 7791700 5363500 4911500 5861400 7799500 6362900 11215000 645730 11418000 7330000 6724600 7806200 5516700 5225100 5704000 7434500 2 2 1 2 2 2 2 2 2 2 2 1172200000 615420000 556770000 5826 3340 5432 31211;31212 37268;37269;37270 37269 3 FPVIQHFK Unmodified 1014.5651 0.56508666 1780 Q15257;Q15257-4;Q15257-3;Q15257-2 PPP2R4 Serine/threonine-protein phosphatase 2A activator yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 52.361 52.112 3 0.0011547 18032 20211116_3441_TMUAki_TMT10x_S_F3 101.99 81.087 6329300 9793700 49561 10803000 9391400 10321000 7171100 7646700 7361600 7060800 8707500 5893600 9142300 611100 10942000 8951900 10484000 7395900 7892000 7528600 6920100 8358100 3 3 2 3 3 3 3 3 3 3 3 3599600 5533300 2676.1 6042900 6865700 8005700 4740800 4554300 4447900 4277000 5062800 3351500 5165100 343940 6158100 6529700 7957100 4910900 4796400 4559600 4188600 4864800 2 2 1 2 2 2 2 2 2 2 2 2729800 4260400 46885 4759800 2525700 2315000 2430200 3092400 2913700 2783800 3644700 2542100 3977200 267160 4783900 2422200 2526600 2485000 3095700 2969000 2731500 3493300 1 1 1 1 1 1 1 1 1 1 1 557580000 362960000 194630000 5827 1780 5433 31213;31214;31215 37271;37272;37273 37273 3 FQDAVLANSFFIMPATVADATAVR Unmodified 2554.289 0.28899474 1939 Q5T4S7;Q5T4S7-3;Q5T4S7-4;Q5T4S7-2;Q5T4S7-5 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 0 0 By MS/MS 2 0 1 1 81.684 81.669 3 2.7237E-05 27173 20211116_3440_TMUAki_TMT10x_S_F2 69.981 57.678 474460 849550 16035 855030 591910 582170 620200 465070 446250 462220 709860 441890 792740 55925 867810 569230 607270 622230 478670 470950 451540 676610 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 474460 849550 16035 855030 591910 582170 620200 465070 446250 462220 709860 441890 792740 55925 867810 569230 607270 622230 478670 470950 451540 676610 1 1 1 1 1 1 1 1 1 1 1 88925000 0 88925000 5828 1939 5434 31216 37274 37274 1 FQDGDLTLYQSNTILR Unmodified 1882.9425 0.94249171 571 P09211 GSTP1 Glutathione S-transferase P yes yes 0 0 0 0 By MS/MS By MS/MS 5.45 1.6 1 2 4 5 10 9 18 24 25 53.434 53.471 2;3 7.353E-82 22782 20211116_3431_TMUAki_TMT10x_P_F4 335.1 283.65 194040000 333090000 1234100 306570000 245910000 303970000 241150000 220500000 214220000 225370000 256270000 180660000 310710000 13434000 314590000 235550000 307950000 244020000 228550000 220600000 219910000 245920000 52 52 17 52 52 52 52 52 52 52 52 94431000 151730000 345760 140420000 98230000 181130000 114160000 108010000 102070000 107790000 119110000 87916000 141540000 5371200 144660000 94518000 180370000 114590000 113500000 104980000 105280000 114370000 24 24 5 24 24 24 24 24 24 24 24 99611000 181360000 888340 166160000 147680000 122840000 126990000 112490000 112140000 117580000 137170000 92741000 169170000 8063100 169930000 141030000 127580000 129430000 115050000 115620000 114630000 131540000 28 28 12 28 28 28 28 28 28 28 28 108670000000 55023000000 53643000000 5829 571 5435 31217;31218;31219;31220;31221;31222;31223;31224;31225;31226;31227;31228;31229;31230;31231;31232;31233;31234;31235;31236;31237;31238;31239;31240;31241;31242;31243;31244;31245;31246;31247;31248;31249;31250;31251;31252;31253;31254;31255;31256;31257;31258;31259;31260;31261;31262;31263;31264;31265 37275;37276;37277;37278;37279;37280;37281;37282;37283;37284;37285;37286;37287;37288;37289;37290;37291;37292;37293;37294;37295;37296;37297;37298;37299;37300;37301;37302;37303;37304;37305;37306;37307;37308;37309;37310;37311;37312;37313;37314;37315;37316;37317;37318;37319;37320;37321;37322;37323;37324;37325;37326;37327;37328;37329;37330;37331;37332;37333;37334;37335;37336;37337 37282 63 FQDGVLEPDFPR Unmodified 1418.683 0.68302954 56 CON__Q3ZBS7 yes yes 0 0 0 0 By MS/MS By MS/MS 3.3 0.9 2 4 3 1 5 5 64.932 64.708 2;3 2.4098E-38 20350 20211116_3431_TMUAki_TMT10x_P_F4 278.95 253.06 + 27414000 64101000 236820 42521000 38354000 57785000 35218000 41373000 53964000 52459000 45702000 25526000 59732000 2474300 45131000 36700000 57557000 36467000 43226000 53786000 50778000 44343000 10 10 6 10 10 10 10 10 10 10 10 11368000 25542000 114580 17140000 17831000 29090000 17553000 16693000 22546000 21442000 18932000 10585000 23802000 1064300 18258000 17092000 28619000 17974000 17740000 22590000 20746000 18375000 4 4 3 4 4 4 4 4 4 4 4 16046000 38559000 122240 25380000 20523000 28695000 17665000 24681000 31418000 31017000 26770000 14941000 35930000 1410000 26873000 19608000 28938000 18494000 25486000 31195000 30032000 25968000 6 6 3 6 6 6 6 6 6 6 6 5676100000 2901000000 2775100000 5830 56 5436 31266;31267;31268;31269;31270;31271;31272;31273;31274;31275 37338;37339;37340;37341;37342;37343;37344;37345;37346;37347;37348;37349;37350;37351 37342 14 FQDLGAAYEVLSDSEK Unmodified 1770.8312 0.83120992 3086 Q9UBS4 DNAJB11 DnaJ homolog subfamily B member 11 yes yes 0 0 0 0 By MS/MS 3 0 1 1 78.414 78.344 3 0.0073358 28555 20211116_3441_TMUAki_TMT10x_S_F3 57.173 45.903 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5831 3086 5437 31276 37352 37352 1 FQDLGAAYEVLSDSEKR Unmodified 1926.9323 0.93232095 3086 Q9UBS4 DNAJB11 DnaJ homolog subfamily B member 11 yes yes 0 0 0 1 By MS/MS 5.67 0.471 1 2 3 72.809 72.819 3 8.4669E-23 23219 20211116_3445_TMUAki_TMT10x_S_F6 162.76 142.94 2514100 4821400 100160 4274900 4643100 4032600 3770000 3770300 3368400 3952800 3887100 2341600 4496800 331600 4396100 4436100 4117200 3857300 3852100 3462700 3853000 3733700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2514100 4821400 100160 4274900 4643100 4032600 3770000 3770300 3368400 3952800 3887100 2341600 4496800 331600 4396100 4436100 4117200 3857300 3852100 3462700 3853000 3733700 1 1 1 1 1 1 1 1 1 1 1 401240000 0 401240000 5832 3086 5438 31277;31278;31279 37353;37354;37355 37354 3 FQDTAEALAAFTALMEGK Unmodified 1912.9241 0.92406445 3254 Q9Y2X3 NOP58 Nucleolar protein 58 yes yes 0 0 0 0 By MS/MS By MS/MS 5.75 2.28 2 2 2 2 4 4 83.349 83.355 3 2.8587E-17 27761 20211116_3436_TMUAki_TMT10x_P_F8 141.07 120.41 4332400 7417300 32966 7468100 4943100 4621600 5643700 3695500 3039700 4079800 5008800 4034000 6921300 381400 7572600 4758200 4862900 5607400 3815600 3276200 3968700 4770800 6 6 3 6 6 6 6 6 6 6 6 1475000 2360600 0 2647500 1655700 1864300 1870100 914950 772100 1163400 1636300 1373300 2203800 118750 2668900 1592600 1926200 1851700 985610 864190 1126000 1551700 2 2 0 2 2 2 2 2 2 2 2 2857400 5056600 32966 4820700 3287400 2757200 3773600 2780500 2267600 2916400 3372500 2660700 4717500 262650 4903700 3165600 2936700 3755700 2829900 2412000 2842700 3219200 4 4 3 4 4 4 4 4 4 4 4 565820000 237040000 328780000 5833 3254 5439 31280;31281;31282;31283;31284;31285;31286;31287 37356;37357;37358;37359;37360;37361 37357 6 FQEHIIQAPKPVEAIK Unmodified 1847.0305 0.030518853 3117 Q9UHD1;Q9UHD1-2 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 5.43 2.87 2 1 2 2 4 3 51.016 51.156 4 2.108E-10 14603 20211116_3436_TMUAki_TMT10x_P_F8 126.19 97.232 72851000 119190000 538220 140070000 96828000 102020000 67935000 97728000 98077000 89007000 104130000 67832000 111290000 6465900 140850000 92122000 106180000 71354000 99318000 98672000 87288000 100260000 9 9 6 9 9 9 9 9 9 9 9 28833000 46474000 125390 52928000 61459000 67182000 38178000 40410000 40300000 35193000 40016000 26845000 43389000 2674000 53752000 58333000 66960000 40009000 42281000 40895000 34587000 38610000 4 4 2 4 4 4 4 4 4 4 4 44018000 72714000 412830 87139000 35369000 34834000 29757000 57318000 57777000 53814000 64113000 40987000 67904000 3791900 87095000 33789000 39218000 31345000 57037000 57777000 52701000 61652000 5 5 4 5 5 5 5 5 5 5 5 17412000000 10658000000 6753900000 5834 3117 5440 31288;31289;31290;31291;31292;31293;31294 37362;37363;37364;37365;37366;37367;37368;37369;37370 37365 9 FQELKDVQDELR Unmodified 1518.7678 0.7678218 423 O95347;O95347-2 SMC2 Structural maintenance of chromosomes protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 58.884 58.936 3 2.3003E-06 18015 20211116_3431_TMUAki_TMT10x_P_F4 117.2 92.412 9606800 16555000 72308 14521000 15427000 19335000 12602000 17920000 16437000 15342000 15524000 8945000 15440000 888630 15030000 14722000 19369000 13049000 18214000 16522000 15090000 15004000 2 2 1 2 2 2 2 2 2 2 2 5172200 8633300 0 7571200 10116000 14399000 8328500 8996800 8833100 8034100 8064200 4815400 8051800 441310 7901000 9651200 14126000 8557000 9391100 8936800 7886200 7803100 1 1 0 1 1 1 1 1 1 1 1 4434600 7921800 72308 6949800 5310700 4936000 4273600 8923600 7603900 7307800 7460200 4129600 7388300 447320 7128500 5070400 5242300 4492300 8823300 7584900 7203700 7201000 1 1 1 1 1 1 1 1 1 1 1 998260000 353210000 645050000 5835 423 5441 31295;31296;31297 37371;37372 37371 2 FQESEERPK Unmodified 1148.5462 0.54620171 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 1 By matching By MS/MS 2.5 0.5 1 1 1 1 31.046 30.806 3 0.00026469 9363 20211116_3441_TMUAki_TMT10x_S_F3 120.36 96.511 253000 488090 4181.4 343350 282140 345580 365200 259820 335820 291560 371470 235600 454890 25280 360530 272870 349980 365180 269450 344190 283440 357240 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 253000 488090 4181.4 343350 282140 345580 365200 259820 335820 291560 371470 235600 454890 25280 360530 272870 349980 365180 269450 344190 283440 357240 1 1 1 1 1 1 1 1 1 1 1 47531000 6166100 41365000 5836 916 5442 31298;31299 37373 37373 1 FQETEFLSPPR Unmodified 1349.6616 0.66156582 1006 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 59.181 59.197 2 1.6549E-07 18091 20211116_3431_TMUAki_TMT10x_P_F4 140.48 103.51 43728000 72718000 43536 78617000 56285000 71335000 49782000 53348000 54255000 54006000 58602000 40713000 67875000 3536100 79677000 53788000 72717000 50974000 55168000 55154000 52718000 56397000 10 10 3 10 10 10 10 10 10 10 10 25006000 39652000 8193.2 42539000 36014000 53485000 32370000 29335000 31094000 29928000 32922000 23282000 37011000 2020000 43356000 34427000 53269000 32986000 31062000 31754000 29204000 31702000 6 6 1 6 6 6 6 6 6 6 6 18722000 33065000 35343 36079000 20271000 17850000 17411000 24013000 23161000 24079000 25680000 17432000 30865000 1516100 36321000 19361000 19447000 17988000 24106000 23400000 23514000 24695000 4 4 2 4 4 4 4 4 4 4 4 3076700000 1926600000 1150100000 5837 1006 5443 31300;31301;31302;31303;31304 37374;37375;37376;37377;37378;37379;37380;37381;37382;37383 37377 10 FQEYHIQQNEALAAK Unmodified 1788.8795 0.87949752 3319 Q9Y5J7 TIMM9 Mitochondrial import inner membrane translocase subunit Tim9 yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 47.742 47.868 3 0.00031226 12996 20211116_3445_TMUAki_TMT10x_S_F6 78.244 60.544 3671400 6601600 100500 7412200 7603300 8349600 5055100 7655500 7583600 6071900 6796100 3419200 6163000 453120 7518400 7232400 8432600 5339200 7771200 7576400 5995300 6580300 2 2 2 2 2 2 2 2 2 2 2 2079600 3660900 54654 4040400 6310400 6908400 4050400 4338800 4500000 3441700 3786600 1936800 3417400 282610 4138000 5997200 6803100 4240600 4514200 4533000 3398300 3674900 1 1 1 1 1 1 1 1 1 1 1 1591800 2940800 45849 3371800 1292900 1441200 1004800 3316700 3083600 2630200 3009500 1482400 2745700 170510 3380400 1235200 1629500 1098600 3257000 3043500 2597100 2905400 1 1 1 1 1 1 1 1 1 1 1 446750000 326270000 120480000 5838 3319 5444 31305;31306 37384;37385 37385 2 FQGEDTVVIASKPYAFDR Unmodified 2042.0109 0.010905622 906 P33176 KIF5B Kinesin-1 heavy chain yes yes 0 0 0 1 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 61.459 61.706 3 1.6823E-40 20574 20211116_3446_TMUAki_TMT10x_S_F7 203.13 193.84 75894000 127790000 768940 132520000 106110000 135220000 90640000 98496000 100150000 101930000 108530000 70666000 119260000 6901200 134900000 101360000 136770000 93043000 102100000 101760000 99407000 104440000 10 10 5 10 10 10 10 10 10 10 10 41030000 67229000 552550 68768000 71887000 101930000 59665000 53341000 53774000 52677000 54989000 38204000 62738000 4022900 70542000 68634000 100700000 60977000 56666000 55007000 51475000 53008000 6 6 3 6 6 6 6 6 6 6 6 34864000 60562000 216390 63757000 34219000 33293000 30975000 45155000 46374000 49251000 53541000 32462000 56523000 2878200 64361000 32729000 36062000 32065000 45435000 46758000 47932000 51427000 4 4 2 4 4 4 4 4 4 4 4 6618700000 3087100000 3531600000 5839 906 5445 31307;31308;31309;31310;31311;31312 37386;37387;37388;37389;37390;37391;37392;37393;37394;37395 37395 10 FQGGKKEELIGIAYNR Unmodified 1821.9737 0.97373226 2406 Q96AC1;Q96AC1-2;Q96AC1-3 FERMT2 Fermitin family homolog 2 yes no 0 0 0 2 By MS/MS By MS/MS 2 0 2 1 1 52.339 52.128 4 0.00076775 16454 20211116_3429_TMUAki_TMT10x_P_F2 72.932 64.94 27763000 51853000 358180 52148000 39311000 40794000 28240000 48713000 46775000 42652000 46202000 25853000 48386000 2797300 53009000 37437000 42437000 29798000 48947000 46754000 41905000 44587000 4 4 4 4 4 4 4 4 4 4 4 6803400 12804000 51331 12283000 17128000 21801000 11416000 12155000 11951000 10753000 11219000 6335000 11945000 756490 12710000 16283000 21405000 11895000 12803000 12109000 10560000 10845000 1 1 1 1 1 1 1 1 1 1 1 20959000 39050000 306840 39865000 22183000 18994000 16825000 36558000 34823000 31898000 34984000 19518000 36440000 2040800 40299000 21154000 21032000 17903000 36144000 34645000 31345000 33742000 3 3 3 3 3 3 3 3 3 3 3 1062900000 655070000 407810000 5840 2406 5446 31313;31314 37396 37396 1 FQGIKHECQANGPEDLNR Unmodified 2111.9807 0.9806849 1282 P60981;P60981-2 DSTN Destrin yes no 0 0 0 1 By MS/MS By MS/MS 5 0 3 2 1 35.967 36.035 3;4 1.6668E-40 7895 20211116_3444_TMUAki_TMT10x_S_F5 205.78 195.53 1502500 2500800 0 2993800 5170700 3836700 2085000 2469500 2728300 1779800 2520900 1398500 2335400 121930 3031900 4876800 3825900 2296200 2559200 2740100 1766600 2438200 2 2 0 2 2 2 2 2 2 2 2 1091400 1958500 0 2124100 4873000 3538500 1811600 1879800 2029200 1331800 1806700 1015800 1828100 92748 2176400 4592200 3480300 2004400 1978600 2047000 1323300 1749700 1 1 0 1 1 1 1 1 1 1 1 411010 542310 0 869700 297740 298210 273400 589660 699060 447950 714200 382670 507260 29182 855570 284660 345600 291770 580570 693080 443330 688490 1 1 0 1 1 1 1 1 1 1 1 561630000 433590000 128040000 5841 1282 5447 31315;31316;31317 37397;37398;37399 37399 3 FQGQDTILDYTLR Unmodified 1568.7835 0.78347187 954 P36639;P36639-4;P36639-3;P36639-2 NUDT1 7,8-dihydro-8-oxoguanine triphosphatase yes no 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 70.923 70.922 2 1.1747E-29 22068 20211116_3434_TMUAki_TMT10x_P_F6 246.56 224.48 27211000 45335000 30802 41766000 28045000 40989000 31556000 27813000 26448000 29010000 33972000 25333000 42289000 1948600 42849000 26958000 41509000 31667000 28979000 27397000 28284000 32539000 7 7 2 7 7 7 7 7 7 7 7 14214000 22635000 30802 21352000 13417000 25499000 15964000 14047000 13763000 14637000 17095000 13233000 21116000 1007700 21935000 12918000 25464000 15991000 14878000 14216000 14271000 16388000 4 4 2 4 4 4 4 4 4 4 4 12997000 22700000 0 20415000 14628000 15490000 15593000 13766000 12685000 14374000 16877000 12100000 21173000 940870 20914000 14040000 16045000 15676000 14102000 13181000 14013000 16151000 3 3 0 3 3 3 3 3 3 3 3 2809300000 1428600000 1380700000 5842 954 5448 31318;31319;31320;31321;31322;31323 37400;37401;37402;37403;37404;37405;37406;37407 37403 8 FQIMNEIVYEK Oxidation (M) 1428.6959 0.69590241 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 1 0 By MS/MS 5 0 1 1 62.714 62.872 3 0.0017545 19894 20211116_3433_TMUAki_TMT10x_P_F5 69.451 47.405 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5843 352 5449 31324 37408 37408 262 1 FQIMNEIVYEK Unmodified 1412.701 0.70098779 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 75.892 75.965 2;3 2.0579E-05 26594 20211116_3446_TMUAki_TMT10x_S_F7 110.66 82.649 8957700 15721000 18077 14991000 10980000 8349900 10310000 6724200 6289500 7716200 10355000 8340700 14667000 787830 15245000 10513000 8879400 10369000 6948500 6718700 7495100 9863600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8957700 15721000 18077 14991000 10980000 8349900 10310000 6724200 6289500 7716200 10355000 8340700 14667000 787830 15245000 10513000 8879400 10369000 6948500 6718700 7495100 9863600 2 2 2 2 2 2 2 2 2 2 2 834300000 262450000 571840000 5844 352 5449 31325;31326;31327;31328 37409;37410;37411 37411 3 FQIPPNAELK Unmodified 1155.6288 0.62880913 1497 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 58.311 58.934 2 0.00029461 19417 20211116_3446_TMUAki_TMT10x_S_F7 114.5 71.25 6650100 10637000 58762 11905000 9415000 9876900 7512300 7142700 7291300 6675300 8078000 6192100 9929800 610690 12025000 8981100 10126000 7712700 7386200 7455200 6538700 7768200 2 2 1 2 2 2 2 2 2 2 2 4335300 6322200 58762 7534900 7116300 8006300 5438700 4037300 4241900 4235900 5046400 4037100 5903900 453140 7608200 6784800 8038000 5567400 4311100 4396300 4128800 4843200 1 1 1 1 1 1 1 1 1 1 1 2314800 4314400 0 4369700 2298800 1870600 2073600 3105400 3049500 2439400 3031600 2155000 4026000 157550 4416500 2196300 2087500 2145300 3075100 3059000 2409900 2925000 1 1 0 1 1 1 1 1 1 1 1 579180000 348090000 231090000 5845 1497 5450 31329;31330 37412;37413 37413 2 FQIPPNAELKYELHLK Unmodified 1939.0567 0.056733603 1497 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 3.8 3.43 3 2 2 3 65.216 65.152 4 5.2651E-21 20307 20211116_3428_TMUAki_TMT10x_P_F1 163.91 137.76 78905000 135880000 630750 110490000 104440000 155460000 101980000 117110000 105880000 109840000 108340000 73467000 126690000 6663800 115190000 100070000 154740000 103690000 120780000 107630000 107570000 104430000 12 12 6 12 12 12 12 12 12 12 12 49223000 85447000 629100 66717000 59847000 120730000 70251000 76767000 68773000 70670000 67336000 45832000 79661000 4256800 70193000 57647000 118670000 70668000 80088000 69979000 69271000 65001000 7 7 5 7 7 7 7 7 7 7 7 29682000 50431000 1646.2 43777000 44596000 34735000 31732000 40338000 37105000 39166000 41000000 27635000 47033000 2406900 44994000 42420000 36069000 33026000 40695000 37651000 38300000 39431000 5 5 1 5 5 5 5 5 5 5 5 6926800000 3651700000 3275200000 5846 1497 5451 31331;31332;31333;31334;31335 37414;37415;37416;37417;37418;37419;37420;37421;37422;37423;37424;37425 37416 12 FQIQDISVETEDNK Unmodified 1664.7893 0.78934511 1475;154 Q01082;Q01082-3;Q01082-2;O15020;O15020-2 SPTBN1;SPTBN2 Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2 no no 0 0 0 0 By MS/MS 4 0 1 1 63.659 63.764 2 0.00046248 20019 20211116_3431_TMUAki_TMT10x_P_F4 79.152 63.262 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5847 1475;154 5452 31336 37426 37426 1 FQLEELRK Unmodified 1061.5869 0.58694431 2315 Q8WWM7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7-3 ATXN2L Ataxin-2-like protein yes no 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 48.872 49.029 3 0.0031133 12974 20211116_3434_TMUAki_TMT10x_P_F6 83.358 21.878 3449600 5859500 354.09 6086200 3722700 3411500 3171900 5671100 5719100 4859700 5772800 3211800 5468400 270580 6152900 3554400 3691100 3325000 5627700 5708600 4779700 5567200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3449600 5859500 354.09 6086200 3722700 3411500 3171900 5671100 5719100 4859700 5772800 3211800 5468400 270580 6152900 3554400 3691100 3325000 5627700 5708600 4779700 5567200 2 2 1 2 2 2 2 2 2 2 2 160690000 0 160690000 5848 2315 5453 31337;31338 37427;37428;37429 37427 3 FQLLEGPPESMGR Oxidation (M) 1475.7079 0.70786408 884 P31150 GDI1 Rab GDP dissociation inhibitor alpha yes yes 0 0 1 0 By MS/MS By MS/MS 5.09 0.793 3 4 4 6 5 58.922 59.009 2;3 0.0043415 17164 20211116_3444_TMUAki_TMT10x_S_F5 61.409 54.436 24710000 40847000 192710 41194000 36524000 47646000 30979000 37740000 38203000 33643000 34698000 23008000 38116000 2281300 42097000 34886000 47918000 31937000 38748000 38425000 33027000 33580000 11 11 7 11 11 11 11 11 11 11 11 16561000 27070000 182750 27178000 27339000 39197000 23137000 25383000 25732000 22632000 23124000 15421000 25260000 1663600 27898000 26117000 38880000 23769000 26423000 25972000 22217000 22388000 7 7 5 7 7 7 7 7 7 7 7 8148900 13777000 9950.5 14016000 9185100 8448600 7841900 12357000 12471000 11011000 11573000 7586800 12856000 617660 14198000 8768600 9038100 8167900 12326000 12453000 10810000 11192000 4 4 2 4 4 4 4 4 4 4 4 5870700000 3573900000 2296800000 5849 884 5454 31339;31340;31341;31342;31343;31344;31345;31346;31347;31348;31349 37430;37431;37432;37433;37434;37435;37436;37437;37438;37439;37440 37438 1059 11 FQLLEGPPESMGR Unmodified 1459.7129 0.71294946 884 P31150 GDI1 Rab GDP dissociation inhibitor alpha yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 65.715 65.66 2 1.5401E-19 20276 20211116_3445_TMUAki_TMT10x_S_F6 196.44 173.95 3343800 5343100 0 5409200 3729200 2554000 3345000 2401300 1992300 2484900 3847600 3113200 4985900 261520 5470900 3564700 2774600 3371200 2451700 2151900 2423400 3654200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3343800 5343100 0 5409200 3729200 2554000 3345000 2401300 1992300 2484900 3847600 3113200 4985900 261520 5470900 3564700 2774600 3371200 2451700 2151900 2423400 3654200 1 1 0 1 1 1 1 1 1 1 1 470080000 0 470080000 5850 884 5454 31350;31351;31352 37441;37442;37443 37443 3 FQMAYSNLLR Oxidation (M) 1257.6176 0.61759251 962 P37108 SRP14 Signal recognition particle 14 kDa protein yes yes 0 0 1 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 57.583 57.305 2 0.00065692 18557 20211116_3429_TMUAki_TMT10x_P_F2 108.43 70.705 15585000 29623000 33316 25643000 22769000 28468000 18640000 26398000 27288000 22049000 24176000 14511000 27627000 1352900 26483000 21726000 28781000 19391000 26814000 27272000 21713000 23418000 6 6 2 6 6 6 6 6 6 6 6 7593200 13280000 0 11501000 13551000 20212000 11272000 11716000 12965000 9953200 11065000 7069600 12385000 661110 11989000 12932000 19862000 11605000 12288000 13048000 9793400 10732000 2 2 0 2 2 2 2 2 2 2 2 7991700 16344000 33316 14142000 9218700 8256400 7368400 14682000 14323000 12096000 13112000 7441200 15242000 691820 14494000 8793500 8918500 7786100 14526000 14224000 11920000 12686000 4 4 2 4 4 4 4 4 4 4 4 1947600000 1118500000 829040000 5851 962 5455 31353;31354;31355;31356 37444;37445;37446;37447;37448;37449 37444 1216 6 FQMPDQGMTSADDFFQGTK 2 Oxidation (M) 2181.8983 0.89831998 1852 Q16555;Q16555-2 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 2 0 By MS/MS By MS/MS 5 0.775 3 4 3 5 5 63.212 63.259 2;3 2.2552E-12 18981 20211116_3444_TMUAki_TMT10x_S_F5 131.79 121.74 21971000 40828000 135110 34278000 25619000 36514000 23457000 44325000 47529000 41443000 35874000 20457000 38072000 1608500 35466000 24510000 37235000 24652000 44587000 46886000 40594000 34967000 12 12 6 12 12 12 12 12 12 12 12 7133100 13939000 64030 12127000 9261200 18061000 9128500 13000000 15002000 13135000 11482000 6642100 13000000 423780 12588000 8880600 17920000 9448200 13477000 14880000 12823000 11185000 4 4 3 4 4 4 4 4 4 4 4 14838000 26889000 71081 22151000 16358000 18452000 14329000 31325000 32527000 28308000 24392000 13815000 25072000 1184800 22877000 15630000 19315000 15204000 31109000 32006000 27771000 23782000 8 8 3 8 8 8 8 8 8 8 8 10894000000 6332600000 4561600000 5852 1852 5456 31357;31358;31359;31360;31361;31362;31363;31364;31365;31366 37450;37451;37452;37453;37454;37455;37456;37457;37458;37459;37460;37461 37458 2463;2464 12 FQMPDQGMTSADDFFQGTK Oxidation (M) 2165.9034 0.90340536 1852 Q16555;Q16555-2 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 1 0 By MS/MS By MS/MS 5.5 0.5 4 4 4 4 71.178 71.164 3 1.3139E-17 23023 20211116_3445_TMUAki_TMT10x_S_F6 144.51 134.98 57966000 99011000 538670 94146000 66649000 81046000 72706000 46804000 39319000 50612000 68063000 53975000 92370000 5184600 96192000 64075000 82603000 72398000 49429000 42481000 49273000 64769000 17 17 11 17 17 17 17 17 17 17 17 31711000 51536000 370320 49058000 31432000 53224000 39396000 25198000 20901000 27464000 35500000 29528000 48079000 2885100 50285000 30355000 53334000 38972000 27102000 22590000 26730000 33793000 9 9 6 9 9 9 9 9 9 9 9 26256000 47475000 168350 45088000 35217000 27823000 33310000 21606000 18419000 23148000 32564000 24447000 44291000 2299500 45908000 33720000 29269000 33426000 22327000 19891000 22544000 30975000 8 8 5 8 8 8 8 8 8 8 8 10282000000 4688100000 5594200000 5853 1852 5456 31367;31368;31369;31370;31371;31372;31373;31374 37462;37463;37464;37465;37466;37467;37468;37469;37470;37471;37472;37473;37474;37475;37476;37477;37478 37478 2463;2464 17 FQMPDQGMTSADDFFQGTK Unmodified 2149.9085 0.90849074 1852 Q16555;Q16555-2 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 0 By matching By MS/MS 6 0.816 1 1 1 1 2 77.438 77.455 3 3.2158E-06 25088 20211116_3445_TMUAki_TMT10x_S_F6 89.049 78.853 4945900 8061700 119970 7539700 6348400 3833300 5966000 3128600 2703400 3281100 5400100 4606000 7520500 541500 7673200 6084800 4117900 5970600 3221100 2988700 3198200 5125800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4945900 8061700 119970 7539700 6348400 3833300 5966000 3128600 2703400 3281100 5400100 4606000 7520500 541500 7673200 6084800 4117900 5970600 3221100 2988700 3198200 5125800 1 1 1 1 1 1 1 1 1 1 1 2977500000 649470000 2328100000 5854 1852 5456 31375;31376;31377 37479 37479 1 FQMQVLPQCGHAVHEDAPDKVAEAVATFLIR Oxidation (M) 3492.7282 0.72822896 3313 Q9Y570;Q9Y570-4;Q9Y570-2 PPME1 Protein phosphatase methylesterase 1 yes no 0 0 1 1 By MS/MS 8 0 1 1 77.515 77.464 5 2.4491E-20 24785 20211116_3447_TMUAki_TMT10x_S_F8 128.43 118.97 3101200 5717800 54729 4457100 4159900 5242500 4297900 5267000 4988700 5887100 4403100 2887900 5330600 322940 4647700 3995500 5292800 4373800 5372500 5024100 5724100 4265600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3101200 5717800 54729 4457100 4159900 5242500 4297900 5267000 4988700 5887100 4403100 2887900 5330600 322940 4647700 3995500 5292800 4373800 5372500 5024100 5724100 4265600 1 1 1 1 1 1 1 1 1 1 1 1946600000 0 1946600000 5855 3313 5457 31378 37480 37480 3273 1 FQMTQEVVCDECPNVK Oxidation (M) 1998.8485 0.84853302 3086 Q9UBS4 DNAJB11 DnaJ homolog subfamily B member 11 yes yes 0 0 1 0 By MS/MS 4 0 1 1 50.324 50.487 3 0.010921 14594 20211116_3431_TMUAki_TMT10x_P_F4 49.354 33.231 1297500 1887000 0 2384200 3904800 3537700 1813600 2030200 2237600 1500700 1879700 1208100 1762600 142020 2414400 3691400 3498900 1962000 2124400 2245100 1487500 1824300 1 1 0 1 1 1 1 1 1 1 1 1297500 1887000 0 2384200 3904800 3537700 1813600 2030200 2237600 1500700 1879700 1208100 1762600 142020 2414400 3691400 3498900 1962000 2124400 2245100 1487500 1824300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 258600000 258600000 0 5856 3086 5458 31379 37481 37481 3131 1 FQNVADLHLYLYSAK Unmodified 1780.9148 0.91482039 1001 P41250 GARS Glycine--tRNA ligase yes yes 0 0 0 0 By MS/MS By MS/MS 3.75 2.49 2 1 1 2 2 71.746 71.491 3 8.7184E-10 23114 20211116_3440_TMUAki_TMT10x_S_F2 129.93 110.85 32896000 58412000 497900 52680000 43353000 62750000 44587000 43936000 44723000 45863000 46770000 30633000 54484000 3305400 54298000 41628000 62881000 45166000 45679000 45565000 44713000 45054000 7 7 6 7 7 7 7 7 7 7 7 15507000 27828000 311490 24253000 21487000 41751000 23979000 21638000 22472000 22571000 21872000 14440000 25953000 1659700 25257000 20684000 41002000 24146000 23043000 22906000 22006000 21118000 3 3 3 3 3 3 3 3 3 3 3 17390000 30584000 186400 28427000 21866000 20998000 20608000 22298000 22251000 23292000 24898000 16193000 28530000 1645800 29041000 20944000 21879000 21020000 22636000 22659000 22707000 23937000 4 4 3 4 4 4 4 4 4 4 4 2686800000 1617000000 1069800000 5857 1001 5459 31380;31381;31382;31383 37482;37483;37484;37485;37486;37487;37488;37489 37488 8 FQNVNSVTIFVQSNQGEEETTR Unmodified 2526.1987 0.19865941 213 O43396 TXNL1 Thioredoxin-like protein 1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 66.392 66.48 3 3.7616E-14 21142 20211116_3431_TMUAki_TMT10x_P_F4 123.99 120.71 858540 1589400 13442 1351000 1005800 2233600 1320900 1449500 1383100 1346600 1395500 799490 1482200 85768 1408300 973110 2203400 1325300 1510300 1404800 1319400 1345800 1 1 1 1 1 1 1 1 1 1 1 858540 1589400 13442 1351000 1005800 2233600 1320900 1449500 1383100 1346600 1395500 799490 1482200 85768 1408300 973110 2203400 1325300 1510300 1404800 1319400 1345800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 538250000 538250000 0 5858 213 5460 31384 37490 37490 1 FQPGETLTEILETPATSEQEAEHQR Unmodified 2840.3464 0.34644586 1059 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 74.122 74.077 3 8.7306E-49 25875 20211116_3439_TMUAki_TMT10x_S_F1 211.92 202.21 3598400 6271600 32129 5566200 4536000 6626800 4589500 4793400 4626500 5298300 5374000 3350600 5849400 329390 5744100 4351800 6644300 4653700 4981200 4731500 5153800 5160900 4 4 3 4 4 4 4 4 4 4 4 1836500 2982100 24232 2636500 1912000 4217600 2375600 2341800 2420800 2601100 2587100 1710100 2781400 163890 2737700 1845600 4156900 2386800 2483400 2466700 2529600 2490500 2 2 1 2 2 2 2 2 2 2 2 1761900 3289500 7896.8 2929700 2624000 2409200 2213900 2451600 2205600 2697200 2786900 1640600 3068100 165510 3006400 2506200 2487400 2266800 2497800 2264900 2624100 2670400 2 2 2 2 2 2 2 2 2 2 2 1382100000 736610000 645490000 5859 1059 5461 31385;31386 37491;37492;37493;37494 37494 4 FQPLFGDFAAEKK Unmodified 1496.7664 0.76636524 1763 Q15050 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 68.337 68.149 3 0.013874 21357 20211116_3428_TMUAki_TMT10x_P_F1 59.261 38.308 3034300 5164700 87595 4757200 3784200 3718400 3438300 4166000 3730600 4273900 4078300 2825900 4817700 343700 4866400 3625000 3862200 3514800 4216300 3794800 4169700 3923400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3034300 5164700 87595 4757200 3784200 3718400 3438300 4166000 3730600 4273900 4078300 2825900 4817700 343700 4866400 3625000 3862200 3514800 4216300 3794800 4169700 3923400 1 1 1 1 1 1 1 1 1 1 1 192180000 0 192180000 5860 1763 5462 31387;31388 37495;37496 37495 2 FQPQSPDFLDITNPK Unmodified 1745.8625 0.86245047 2374 Q92890;Q92890-1;Q92890-3 UFD1L Ubiquitin fusion degradation protein 1 homolog yes no 0 0 0 0 By MS/MS 6 0.816 1 1 1 3 73.994 74.03 2;3 4.8958E-10 25236 20211116_3435_TMUAki_TMT10x_P_F7 115.91 102.5 5063100 9054500 116450 8920400 5403500 9900100 6282900 5410300 4995500 5622300 6511600 4715100 8448300 533060 9124400 5210300 9924300 6287200 5733800 5192200 5482300 6234500 2 2 2 2 2 2 2 2 2 2 2 5063100 9054500 116450 8920400 5403500 9900100 6282900 5410300 4995500 5622300 6511600 4715100 8448300 533060 9124400 5210300 9924300 6287200 5733800 5192200 5482300 6234500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 565330000 565330000 0 5861 2374 5463 31389;31390;31391 37497;37498;37499;37500 37500 4 FQSDSSSYPTVDSNSLLGQSR Unmodified 2274.04 0.040033499 3216 Q9UQ35;Q9UQ35-2 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 0 0 0 0 By MS/MS 6 0 2 2 60.459 60.498 3 2.0624E-08 17735 20211116_3434_TMUAki_TMT10x_P_F6 101.64 90.203 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5862 3216 5464 31392;31393 37501;37502 37501 2 FQSIVIGCALEDQKK Unmodified 1734.8975 0.89745577 446 O95816;O95816-2 BAG2 BAG family molecular chaperone regulator 2 yes no 0 0 0 1 By MS/MS 7.5 0.5 1 1 2 63.189 63.615 3 0.0027677 19707 20211116_3436_TMUAki_TMT10x_P_F8 62.445 49.027 11884000 20474000 53699 15782000 17245000 32043000 18645000 20914000 17591000 18279000 18280000 11065000 19087000 1110400 16675000 16574000 31390000 18807000 21747000 17967000 17961000 17613000 1 1 1 1 1 1 1 1 1 1 1 11884000 20474000 53699 15782000 17245000 32043000 18645000 20914000 17591000 18279000 18280000 11065000 19087000 1110400 16675000 16574000 31390000 18807000 21747000 17967000 17961000 17613000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1285600000 1285600000 0 5863 446 5465 31394;31395 37503 37503 1 FQSLGVAFYR Unmodified 1186.6135 0.61349341 1151 P51149 RAB7A Ras-related protein Rab-7a yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 66.003 65.963 2 9.5628E-11 21402 20211116_3442_TMUAki_TMT10x_S_F4 200.6 165.5 28168000 48962000 0 39535000 32144000 45715000 32571000 27872000 29226000 26423000 29939000 26223000 45651000 1801500 41090000 30794000 45789000 32912000 29195000 29905000 25866000 28859000 2 2 0 2 2 2 2 2 2 2 2 19124000 33584000 0 26366000 21126000 37013000 23333000 18487000 20330000 17815000 19390000 17802000 31310000 1134000 27567000 20281000 36633000 23459000 19711000 20780000 17426000 18734000 1 1 0 1 1 1 1 1 1 1 1 9044700 15378000 0 13168000 11018000 8702000 9237800 9384500 8896500 8608600 10549000 8420600 14341000 667510 13523000 10513000 9155800 9452800 9483900 9124200 8439500 10125000 1 1 0 1 1 1 1 1 1 1 1 3140900000 1658300000 1482500000 5864 1151 5466 31396;31397 37504;37505 37505 2 FQSPYEEQLEQQR Unmodified 1680.7744 0.77436375 92 O00461 GOLIM4 Golgi integral membrane protein 4 yes yes 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 49.286 49.327 3 9.7862E-12 15777 20211116_3430_TMUAki_TMT10x_P_F3 145.81 129.95 1116400 1635100 45958 1852000 1952600 2415200 1448900 1587600 1307500 1309700 1428600 1039800 1526600 147100 1882500 1862400 2407100 1491600 1647700 1340700 1290600 1374400 1 1 1 1 1 1 1 1 1 1 1 1116400 1635100 45958 1852000 1952600 2415200 1448900 1587600 1307500 1309700 1428600 1039800 1526600 147100 1882500 1862400 2407100 1491600 1647700 1340700 1290600 1374400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 350550000 350550000 0 5865 92 5467 31398;31399 37506 37506 1 FQTHAEAQAAINTLHSSR Unmodified 1980.9766 0.9765858 1935 Q5SZQ8;Q5SZQ8-4;Q5SZQ8-3;Q5SZQ8-2 CELF3 CUGBP Elav-like family member 3 yes no 0 0 0 0 By MS/MS 2 0 1 1 38.161 37.912 4 0.00013214 10734 20211116_3429_TMUAki_TMT10x_P_F2 74.657 62.966 264240 445880 2188.2 492640 875470 668680 480910 418890 442060 365570 477600 246050 416230 32507 501900 829650 664740 507240 436910 452680 359230 459620 1 1 1 1 1 1 1 1 1 1 1 264240 445880 2188.2 492640 875470 668680 480910 418890 442060 365570 477600 246050 416230 32507 501900 829650 664740 507240 436910 452680 359230 459620 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 101190000 101190000 0 5866 1935 5468 31400 37507 37507 1 FQVDPSGEIVELAK Unmodified 1530.793 0.79297392 2854 Q9HB07 C12orf10 UPF0160 protein MYG1, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4.08 1.07 1 3 4 4 1 7 6 74.565 74.509 2;3 1.8233E-15 24853 20211116_3442_TMUAki_TMT10x_S_F4 160.27 106.59 52761000 90460000 951700 83424000 64210000 86817000 66399000 57244000 55331000 62300000 67655000 49132000 84383000 5282700 85654000 61671000 87570000 66894000 59845000 57212000 60637000 64883000 13 13 10 13 13 13 13 13 13 13 13 29133000 49314000 597990 45373000 31420000 59156000 37365000 31461000 29820000 34073000 36064000 27130000 46000000 3004200 46772000 30313000 58791000 37357000 33464000 30888000 33170000 34597000 7 7 6 7 7 7 7 7 7 7 7 23628000 41147000 353710 38051000 32790000 27662000 29033000 25782000 25512000 28226000 31591000 22001000 38383000 2278500 38882000 31358000 28779000 29537000 26382000 26324000 27467000 30286000 6 6 4 6 6 6 6 6 6 6 6 5120300000 2612700000 2507600000 5867 2854 5469 31401;31402;31403;31404;31405;31406;31407;31408;31409;31410;31411;31412;31413 37508;37509;37510;37511;37512;37513;37514;37515;37516;37517;37518;37519;37520 37517 13 FQVVDSR Unmodified 849.43447 0.43446642 800 P25325;P25325-2 MPST 3-mercaptopyruvate sulfurtransferase yes no 0 0 0 0 By MS/MS 4 0 1 1 36.823 36.955 2 0.046687 9658 20211116_3442_TMUAki_TMT10x_S_F4 70.912 32.121 243130 401890 4017.8 403950 253280 216760 298530 205580 202010 185580 295200 226410 375010 24044 409150 244240 232120 297460 208990 213040 182070 281880 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 243130 401890 4017.8 403950 253280 216760 298530 205580 202010 185580 295200 226410 375010 24044 409150 244240 232120 297460 208990 213040 182070 281880 1 1 1 1 1 1 1 1 1 1 1 11388000 0 11388000 5868 800 5470 31414 37521 37521 1 FQVVINGR Unmodified 931.52395 0.52395013 1242 P55265;P55265-5;P55265-4;P55265-3;P55265-2 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 47.215 47.15 2 0.0070062 14512 20211116_3429_TMUAki_TMT10x_P_F2 85.272 73.71 3045300 4816200 171290 5452800 2842000 2942600 3539100 3408400 3514300 3316600 4110700 2836800 4496500 409260 5480300 2752900 3163000 3552700 3439200 3597400 3242900 3947000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3045300 4816200 171290 5452800 2842000 2942600 3539100 3408400 3514300 3316600 4110700 2836800 4496500 409260 5480300 2752900 3163000 3552700 3439200 3597400 3242900 3947000 1 1 1 1 1 1 1 1 1 1 1 156300000 0 156300000 5869 1242 5471 31415;31416 37522;37523 37522 2 FQWDLNAWTK Unmodified 1307.6299 0.62987176 1615 Q13263;Q13263-2 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 0 By matching By MS/MS 2 0 2 1 1 78.204 78.163 2 0.0037592 25764 20211116_3440_TMUAki_TMT10x_S_F2 79.201 62.977 4351400 7119000 37769 7935300 5698100 4087500 5416700 2827200 2278700 2996700 5690300 4051900 6645800 414820 7980100 5458800 4373100 5411900 2943200 2576500 2919700 5383600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4351400 7119000 37769 7935300 5698100 4087500 5416700 2827200 2278700 2996700 5690300 4051900 6645800 414820 7980100 5458800 4373100 5411900 2943200 2576500 2919700 5383600 1 1 1 1 1 1 1 1 1 1 1 1526800000 949680000 577130000 5870 1615 5472 31417;31418 37524 37524 1 FQYCVAVGAQTFPSVSAPSK Unmodified 2143.0408 0.040825542 1242 P55265;P55265-5;P55265-4;P55265-3;P55265-2 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 0 0 By MS/MS By MS/MS 3 0 3 2 1 71.543 71.271 3;4 1.4749E-07 25791 20211116_3441_TMUAki_TMT10x_S_F3 100.21 89.574 11217000 18994000 109230 18115000 12247000 17298000 13047000 10176000 10424000 11208000 13856000 10445000 17720000 987700 18530000 11766000 17513000 13111000 10737000 10841000 10904000 13260000 5 5 3 5 5 5 5 5 5 5 5 6516200 10767000 67230 10394000 6599500 12069000 7760600 5950900 6163400 6332200 8127500 6067600 10046000 589580 10655000 6360200 12054000 7761800 6370600 6409800 6168600 7779500 3 3 2 3 3 3 3 3 3 3 3 4701000 8226800 41996 7721700 5647700 5228900 5286000 4225400 4260500 4876300 5728100 4377100 7674600 398130 7875800 5405800 5458100 5349000 4366200 4431300 4735600 5480200 2 2 1 2 2 2 2 2 2 2 2 1702000000 1039100000 662860000 5871 1242 5473 31419;31420;31421 37525;37526;37527;37528;37529 37529 5 FQYCVAVGAQTFPSVSAPSKK Unmodified 2271.1358 0.13578856 1242 P55265;P55265-5;P55265-4;P55265-3;P55265-2 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 63.113 63.094 4 1.8332E-05 19750 20211116_3431_TMUAki_TMT10x_P_F4 78.987 65.799 6240800 10742000 97773 9458600 7809100 9948500 7313800 8739800 6954700 6915500 8159200 5811500 10019000 621140 9747300 7480500 10077000 7433400 8892500 7133600 6829200 7833600 2 2 1 2 2 2 2 2 2 2 2 3083700 5313300 0 4499800 3274300 6152800 3418300 4320700 3304300 2972700 3809700 2871200 4954800 248980 4672700 3142600 6124900 3456300 4445100 3384500 2958900 3659400 1 1 0 1 1 1 1 1 1 1 1 3157100 5429200 97773 4958900 4534800 3795700 3895500 4419100 3650400 3942700 4349500 2940300 5064300 372160 5074700 4338000 3952500 3977200 4447300 3749200 3870300 4174200 1 1 1 1 1 1 1 1 1 1 1 2335700000 1246800000 1088900000 5872 1242 5474 31422;31423 37530;37531 37530 2 FRAESVVPAR Unmodified 1130.6196 0.61964142 1203 P53602 MVD Diphosphomevalonate decarboxylase yes yes 0 0 0 1 By MS/MS 1 0 1 1 34.228 34.217 3 0.00089012 9620 20211116_3439_TMUAki_TMT10x_S_F1 81.09 52.393 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5873 1203 5475 31424 37532 37532 1 FRCPEALFQPSFLGMESCGIHETTFNSIMK 2 Oxidation (M) 3565.6139 0.6138524 1276;1406 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 2 1 By MS/MS By MS/MS 3.33 2.58 2 3 2 2 4 5 72.787 72.655 4;5 1.2978E-06 23453 20211116_3440_TMUAki_TMT10x_S_F2 74.058 67.963 28431000 50274000 262100 42197000 36785000 77658000 34958000 44751000 49078000 55290000 40591000 26473000 46881000 2244900 44148000 35232000 76186000 35992000 47476000 49009000 53565000 39419000 8 8 4 8 8 8 8 8 8 8 8 16487000 26457000 185530 21236000 14644000 52069000 18367000 26215000 27312000 29609000 22228000 15352000 24668000 1477100 22494000 14144000 50562000 18713000 28060000 27213000 28778000 21600000 4 4 2 4 4 4 4 4 4 4 4 11944000 23817000 76569 20961000 22141000 25589000 16591000 18535000 21766000 25681000 18363000 11120000 22213000 767740 21654000 21088000 25624000 17279000 19415000 21796000 24787000 17819000 4 4 2 4 4 4 4 4 4 4 4 14486000000 6892500000 7593600000 5874 1276;1406 5476 31425;31426;31427;31428;31429;31430;31431;31432;31433 37533;37534;37535;37536;37537;37538;37539;37540 37539 1716;1717 8 FRCPEALFQPSFLGMESCGIHETTFNSIMK Oxidation (M) 3549.6189 0.61893778 1276;1406 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 1 1 By MS/MS By MS/MS 4.75 3.27 1 1 2 3 1 76.698 76.662 4 9.1789E-11 26376 20211116_3429_TMUAki_TMT10x_P_F2 99.396 89.337 45657000 66397000 2117900 75165000 34584000 67529000 35903000 12540000 12974000 23523000 36503000 42527000 61988000 5604000 75947000 33323000 68029000 35639000 15854000 15037000 22522000 34485000 5 5 5 5 5 5 5 5 5 5 5 42383000 60803000 2115000 70034000 30459000 63916000 32389000 10731000 11276000 20926000 33141000 39478000 56770000 5317900 70703000 29382000 64295000 32099000 13900000 13171000 20017000 31293000 4 4 4 4 4 4 4 4 4 4 4 3274200 5593500 2896.9 5130400 4125800 3613200 3513800 1808800 1698500 2597900 3361800 3048600 5217600 286080 5243800 3940800 3733900 3540000 1953700 1866400 2504800 3191500 1 1 1 1 1 1 1 1 1 1 1 12338000000 11287000000 1050900000 5875 1276;1406 5476 31434;31435;31436;31437 37541;37542;37543;37544;37545 37543 1716;1717 5 FRDASLVFK Unmodified 1081.592 0.59202969 1303 P61221 ABCE1 ATP-binding cassette sub-family E member 1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.8 2.64 2 2 1 3 2 52.93 52.749 3 2.6611E-05 15092 20211116_3428_TMUAki_TMT10x_P_F1 149.17 112.19 13235000 21062000 75873 23488000 21274000 19976000 14301000 19558000 20032000 16146000 20204000 12324000 19662000 1258500 23738000 20227000 20558000 15048000 19804000 20134000 15909000 19485000 5 5 4 5 5 5 5 5 5 5 5 5780100 8845500 975.16 10399000 14187000 13868000 7912600 8462800 8879500 6888100 9089200 5381700 8259600 575800 10551000 13444000 13792000 8384200 8830000 8998500 6792200 8761500 2 2 1 2 2 2 2 2 2 2 2 7455100 12217000 74898 13089000 7086800 6108700 6388000 11095000 11153000 9257600 11115000 6942000 11403000 682720 13187000 6782100 6765800 6663600 10974000 11136000 9117100 10723000 3 3 3 3 3 3 3 3 3 3 3 2154500000 1068200000 1086400000 5876 1303 5477 31438;31439;31440;31441;31442 37546;37547;37548;37549;37550;37551 37546 6 FRDGPPLR Unmodified 956.5192 0.5191991 1765 Q15056-2;Q15056 EIF4H Eukaryotic translation initiation factor 4H yes no 0 0 0 1 By MS/MS By MS/MS 3.75 2.95 2 1 1 2 2 32.293 32.284 3 0.0046234 6891 20211116_3428_TMUAki_TMT10x_P_F1 85.733 48.961 1808500 3067200 0 2705700 2758400 3241600 1987300 1789100 2270600 1867200 2350700 1683700 2860700 143790 2793800 2624200 3236600 2064900 1894700 2300400 1820400 2265100 3 3 0 3 3 3 3 3 3 3 3 1514200 2491200 0 2201200 2351900 2979300 1653200 1368400 1688300 1450800 1888100 1409800 2323500 120970 2277700 2236500 2950900 1714500 1475100 1723100 1413500 1815200 2 2 0 2 2 2 2 2 2 2 2 294230 576020 0 504460 406510 262290 334060 420670 582300 416410 462620 273930 537220 22819 516070 387750 285700 350330 419580 577280 406860 449980 1 1 0 1 1 1 1 1 1 1 1 98936000 80342000 18594000 5877 1765 5478 31443;31444;31445;31446 37552;37553;37554;37555 37552 4 FRDNCLAILESK Unmodified 1464.7395 0.73949856 3290 Q9Y448;Q9Y448-3;Q9Y448-2 KNSTRN Small kinetochore-associated protein yes no 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 56.227 56.857 3 8.9025E-05 18632 20211116_3446_TMUAki_TMT10x_S_F7 96.866 53.237 15653000 26811000 467110 28445000 26283000 28921000 19399000 21759000 20038000 20546000 22196000 14578000 25023000 1882000 28911000 25056000 29272000 20057000 22449000 20434000 20117000 21345000 3 3 3 3 3 3 3 3 3 3 3 9090500 15621000 338580 16646000 19684000 23629000 14795000 13401000 12890000 12534000 13620000 8466700 14580000 1217600 17014000 18771000 23411000 15204000 14115000 13222000 12278000 13116000 2 2 2 2 2 2 2 2 2 2 2 6562900 11189000 128520 11799000 6598600 5291600 4604100 8358800 7148700 8011800 8576900 6111600 10443000 664390 11897000 6284700 5861100 4853200 8333500 7211900 7839000 8229600 1 1 1 1 1 1 1 1 1 1 1 1286400000 664070000 622380000 5878 3290 5479 31447;31448 37556;37557;37558 37558 3 FRDPDLR Unmodified 917.47191 0.47191456 204 O43251-8;O43251-6;Q9NWB1-2;O43251-7;Q9NWB1-5;Q9NWB1-4;O43251-2;O43251-5;O43251;Q9NWB1-3;O43251-9;O43251-10;Q9NWB1;O43251-4;O43251-3;A6NFN3-2;A6NFN3 RBFOX2;RBFOX1;RBFOX3 RNA binding protein fox-1 homolog 2;RNA binding protein fox-1 homolog 1;RNA binding protein fox-1 homolog 3 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 32.753 32.646 3 0.013496 7494 20211116_3431_TMUAki_TMT10x_P_F4 82.452 40.8 809710 1191700 4797.4 1210900 1016800 929330 881440 576000 687700 612870 934570 753950 1112000 73009 1229700 971770 956160 895160 604570 716860 597050 893900 2 2 1 2 2 2 2 2 2 2 2 305920 448000 4797.4 482550 548380 538390 326220 303030 369950 312320 380010 284870 418160 33229 490670 520510 539750 343870 320250 374800 304650 366270 1 1 1 1 1 1 1 1 1 1 1 503800 743650 0 728340 468450 390930 555220 272970 317750 300550 554560 469070 693850 39779 739060 451250 416420 551290 284320 342050 292400 527640 1 1 0 1 1 1 1 1 1 1 1 59631000 49647000 9984000 5879 204 5480 31449;31450 37559;37560 37559 2 FRDSILR Unmodified 905.5083 0.50830006 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 1 By MS/MS By MS/MS 6.11 2.81 2 1 1 5 6 3 34.724 34.922 3 0.00066316 8520 20211116_3428_TMUAki_TMT10x_P_F1 142.79 88.015 1346700 2091700 17359 2197200 1850400 1680700 1351300 1339000 1338700 1232000 1523700 1254100 1952200 131640 2226300 1762700 1736400 1396300 1375400 1369000 1207600 1464100 7 7 5 7 7 7 7 7 7 7 7 743230 1145300 14179 1166500 1324700 1230000 782820 773540 770840 716780 839230 692120 1068800 79731 1189500 1257300 1238900 822010 807820 787150 702380 807460 5 5 3 5 5 5 5 5 5 5 5 603510 946340 3179.8 1030700 525730 450680 568430 565430 567830 515190 684420 561950 883350 51909 1036800 505360 497480 574330 567600 581830 505230 656630 2 2 2 2 2 2 2 2 2 2 2 221480000 121380000 100100000 5880 1092 5481 31451;31452;31453;31454;31455;31456;31457;31458;31459 37561;37562;37563;37564;37565;37566;37567;37568;37569;37570 37561 10 FREALGDAQQSVR Unmodified 1475.7481 0.74808942 2590 Q99615;Q99615-2 DNAJC7 DnaJ homolog subfamily C member 7 yes no 0 0 0 1 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 38.917 38.965 3 1.8955E-25 9200 20211116_3444_TMUAki_TMT10x_S_F5 225.33 174.27 2740500 4434000 41240 5712300 7443200 6219500 3710100 4015900 4767000 3490100 4414600 2552000 4142200 331510 5744800 7045500 6255200 3991200 4178500 4790900 3430200 4269500 3 3 3 3 3 3 3 3 3 3 3 2101000 3415900 31046 4343300 6858400 5699100 3139900 2981300 3560900 2728600 3396700 1956500 3190900 269750 4385700 6484600 5661200 3392400 3160800 3598300 2675300 3281800 2 2 2 2 2 2 2 2 2 2 2 639490 1018100 10193 1369000 584780 520340 570140 1034600 1206200 761490 1017800 595500 951310 61751 1359100 560960 593990 598770 1017700 1192600 754960 987710 1 1 1 1 1 1 1 1 1 1 1 390910000 310570000 80334000 5881 2590 5482 31460;31461;31462 37571;37572;37573 37573 3 FREDHPDLIQNAK Unmodified 1581.79 0.78995423 705 P17480;P17480-2 UBTF Nucleolar transcription factor 1 yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 37.838 37.893 4 3.9263E-06 8670 20211116_3444_TMUAki_TMT10x_S_F5 110.38 77.433 3167500 5066900 31091 5680400 7183300 5692300 3994800 4248300 4823700 3337000 4808900 2949400 4730300 340880 5751800 6808900 5765800 4244500 4365000 4870500 3296600 4639500 3 3 1 3 3 3 3 3 3 3 3 2158300 3341800 0 3858800 5968200 4837400 2941300 2790500 3215500 2239000 3161700 2009600 3120200 225360 3914700 5646000 4821600 3150300 2924000 3257400 2209400 3051600 2 2 0 2 2 2 2 2 2 2 2 1009200 1725100 31091 1821600 1215100 854970 1053500 1457800 1608200 1098000 1647200 939870 1610100 115530 1837100 1162900 944160 1094200 1441000 1613200 1087200 1587800 1 1 1 1 1 1 1 1 1 1 1 568710000 447040000 121670000 5882 705 5483 31463;31464;31465 37574;37575;37576 37576 3 FREEPGCCIAVHCVAGLGR Unmodified 2187.0136 0.013581709 2392 Q93096 PTP4A1 Protein tyrosine phosphatase type IVA 1 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 43.468 43.991 4 4.3384E-12 13103 20211116_3435_TMUAki_TMT10x_P_F7 126.8 109.31 1936200 2903000 20860 3535800 2618600 2880300 1980900 2606900 2656300 2333100 2822900 1802900 2711200 177060 3552600 2495300 2968600 2063600 2656100 2678700 2289900 2718000 3 3 1 3 3 3 3 3 3 3 3 869050 1251900 0 1515500 1623000 1893800 1096900 1286600 1229000 1128400 1174400 809100 1169200 73008 1533100 1542300 1892300 1144200 1334000 1242600 1108600 1134600 1 1 0 1 1 1 1 1 1 1 1 1067200 1651100 20860 2020300 995660 986520 884040 1320300 1427200 1204700 1648500 993770 1542000 104050 2019500 952950 1076300 919370 1322100 1436100 1181300 1583400 2 2 1 2 2 2 2 2 2 2 2 696480000 623110000 73377000 5883 2392 5484 31466;31467 37577;37578;37579 37577 3 FREEPGCCVAVHCVAGLGR Unmodified 2172.9979 0.99793165 1582 Q12974;Q12974-3;Q12974-4 PTP4A2 Protein tyrosine phosphatase type IVA 2 yes no 0 0 0 1 By MS/MS 7 0 1 1 40.642 41.09 4 1.4513E-12 11795 20211116_3435_TMUAki_TMT10x_P_F7 136.26 122.53 3584000 6140200 192940 6143300 5835200 7124800 4462000 4546300 4921600 3543000 4317600 3338500 5729500 508480 6281600 5572300 7139800 4612000 4722500 4965300 3501600 4183700 2 2 2 2 2 2 2 2 2 2 2 3584000 6140200 192940 6143300 5835200 7124800 4462000 4546300 4921600 3543000 4317600 3338500 5729500 508480 6281600 5572300 7139800 4612000 4722500 4965300 3501600 4183700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 539490000 539490000 0 5884 1582 5485 31468 37580;37581 37580 2 FREIQQELSSGRNEGQLNGETNTPIEGNQAGDAAASAR Unmodified 4014.9016 0.90158954 719 P18583;P18583-3;P18583-5;P18583-6;P18583-10;P18583-4;P18583-7;P18583-9;P18583-2;P18583-8 SON Protein SON yes no 0 0 0 2 By MS/MS 3.5 0.5 1 1 2 52.19 52.21 4 4.7504E-107 15269 20211116_3431_TMUAki_TMT10x_P_F4 276.9 268.21 490460 827070 6178.5 865870 753380 1153500 630630 626060 697880 555300 657870 456710 771890 50103 884890 719660 1145500 648180 661040 705610 545250 635860 1 1 1 1 1 1 1 1 1 1 1 490460 827070 6178.5 865870 753380 1153500 630630 626060 697880 555300 657870 456710 771890 50103 884890 719660 1145500 648180 661040 705610 545250 635860 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 744980000 744980000 0 5885 719 5486 31469;31470 37582 37582 1 FRFDYTNER Unmodified 1246.5731 0.57308516 796 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 0 0 0 1 By MS/MS 7 0 1 1 40.772 41.376 3 3.2822E-05 12268 20211116_3446_TMUAki_TMT10x_S_F7 146.17 98.983 354490 590450 0 624750 336650 292760 307600 446870 492120 373910 461660 330060 551090 28761 629960 322040 322180 319240 444380 491490 368180 446290 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 354490 590450 0 624750 336650 292760 307600 446870 492120 373910 461660 330060 551090 28761 629960 322040 322180 319240 444380 491490 368180 446290 1 1 0 1 1 1 1 1 1 1 1 25918000 0 25918000 5886 796 5487 31471 37583 37583 1 FRFPSPILK Unmodified 1103.6492 0.64915064 1786 Q15291;Q15291-2 RBBP5 Retinoblastoma-binding protein 5 yes no 0 0 0 1 By MS/MS 6 0 1 1 60.145 60.165 3 0.00056498 17988 20211116_3445_TMUAki_TMT10x_S_F6 103.87 65.635 1871900 2989900 11758 3111600 2222700 1719100 1781600 2587300 2351200 2327600 2467500 1743000 2790300 171060 3144900 2120800 1856700 1847800 2579000 2371200 2284000 2376700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1871900 2989900 11758 3111600 2222700 1719100 1781600 2587300 2351200 2327600 2467500 1743000 2790300 171060 3144900 2120800 1856700 1847800 2579000 2371200 2284000 2376700 1 1 1 1 1 1 1 1 1 1 1 241630000 0 241630000 5887 1786 5488 31472 37584 37584 1 FRGFSIPECQK Unmodified 1367.6656 0.66560534 330 O75390 CS Citrate synthase, mitochondrial yes yes 0 0 0 1 By MS/MS 2 0 1 1 50.108 49.843 3 0.064427 15585 20211116_3429_TMUAki_TMT10x_P_F2 42.083 21.226 2130300 3495400 22103 3868500 3683900 4322600 3008800 2642900 2661900 2279500 2851200 1983700 3262900 218980 3926900 3516600 4337900 3076600 2761000 2729900 2241200 2744600 1 1 1 1 1 1 1 1 1 1 1 2130300 3495400 22103 3868500 3683900 4322600 3008800 2642900 2661900 2279500 2851200 1983700 3262900 218980 3926900 3516600 4337900 3076600 2761000 2729900 2241200 2744600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 409220000 409220000 0 5888 330 5489 31473 37585 37585 1 FRGHLDNISNNLLIGAINIENGK Unmodified 2521.3401 0.34011911 2605 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 1 By MS/MS 2 0 1 1 72.208 71.984 4 0.071459 24600 20211116_3429_TMUAki_TMT10x_P_F2 36.627 16.001 2466000 3831100 63227 3625100 2205300 4362200 3245500 2825300 2388800 2713700 3363700 2296600 3574000 259720 3723800 2144500 4363900 3211100 2946800 2502300 2655000 3214700 1 1 1 1 1 1 1 1 1 1 1 2466000 3831100 63227 3625100 2205300 4362200 3245500 2825300 2388800 2713700 3363700 2296600 3574000 259720 3723800 2144500 4363900 3211100 2946800 2502300 2655000 3214700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 181160000 181160000 0 5889 2605 5490 31474 37586 37586 1 FRGPFTDVVTTNLK Unmodified 1593.8515 0.85149185 418 O95292;O95292-2 VAPB Vesicle-associated membrane protein-associated protein B/C yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 61.629 61.351 3 1.18E-23 20745 20211116_3430_TMUAki_TMT10x_P_F3 191.06 145.14 26804000 49034000 563000 42870000 36008000 47685000 31876000 42203000 39884000 37362000 40425000 24961000 45731000 2875800 44242000 34457000 48158000 32797000 43040000 40244000 36689000 38980000 6 6 6 6 6 6 6 6 6 6 6 10147000 17909000 176620 15007000 15327000 26714000 14776000 15282000 14776000 13227000 14493000 9449200 16700000 1078400 15690000 14693000 26236000 15017000 16053000 15022000 13002000 13990000 2 2 2 2 2 2 2 2 2 2 2 16657000 31126000 386380 27863000 20681000 20971000 17100000 26921000 25108000 24135000 25932000 15512000 29031000 1797400 28552000 19763000 21922000 17780000 26988000 25222000 23686000 24990000 4 4 4 4 4 4 4 4 4 4 4 2566000000 1025600000 1540300000 5890 418 5491 31475;31476;31477;31478 37587;37588;37589;37590;37591;37592;37593 37588 7 FRGTEPEPR Unmodified 1087.5411 0.54105675 800 P25325;P25325-2 MPST 3-mercaptopyruvate sulfurtransferase yes no 0 0 0 1 By MS/MS By MS/MS 3.8 1.17 1 1 1 2 3 2 28.102 28.01 3 0.00027849 8290 20211116_3441_TMUAki_TMT10x_S_F3 119.6 93.088 754290 1131000 5899.4 952480 778560 922650 812200 620490 606510 578680 845470 702340 1054700 65768 983850 747550 934990 815720 644870 634500 566890 808200 3 3 1 3 3 3 3 3 3 3 3 476690 661820 5899.4 561470 449160 648730 425930 370550 360090 360680 505460 443880 617170 43979 581180 430400 649250 431210 390490 374370 352660 483100 2 2 1 2 2 2 2 2 2 2 2 277600 469200 0 391020 329400 273920 386270 249940 246420 218000 340010 258460 437520 21789 402670 317150 285740 384510 254380 260130 214230 325090 1 1 0 1 1 1 1 1 1 1 1 53694000 26645000 27049000 5891 800 5492 31479;31480;31481;31482;31483 37594;37595;37596 37596 3 FRHENIIGINDIIR Unmodified 1708.9373 0.93728717 845 P28482;P28482-2 MAPK1 Mitogen-activated protein kinase 1 yes no 0 0 0 1 By MS/MS By MS/MS 3.17 2.41 2 1 1 1 1 2 4 53.825 53.66 3;4 4.5228E-20 15198 20211116_3436_TMUAki_TMT10x_P_F8 159.18 114.04 17701000 26409000 296000 28039000 16683000 13624000 14651000 18875000 17974000 16480000 20286000 16483000 24648000 1729100 28274000 15964000 14887000 15071000 18854000 18222000 16194000 19497000 5 5 5 5 5 5 5 5 5 5 5 2201600 2914700 12077 3165000 2763400 3057300 2335400 2105500 2095800 2161400 2381600 2050000 2720700 201650 3209500 2639600 3099800 2383900 2190400 2152800 2108700 2288600 1 1 1 1 1 1 1 1 1 1 1 15499000 23494000 283920 24874000 13920000 10567000 12316000 16769000 15878000 14319000 17904000 14433000 21927000 1527500 25064000 13324000 11787000 12687000 16663000 16069000 14085000 17209000 4 4 4 4 4 4 4 4 4 4 4 4477000000 392090000 4084900000 5892 845 5493 31484;31485;31486;31487;31488;31489 37597;37598 37597 2 FRIDELEPR Unmodified 1173.6142 0.6142217 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 1 By MS/MS By MS/MS 3.78 0.916 1 2 4 2 5 4 50.711 50.737 2;3 3.7404E-05 13798 20211116_3444_TMUAki_TMT10x_S_F5 143.96 95.457 17055000 28075000 131520 32124000 28593000 40170000 19184000 23789000 23904000 31431000 24825000 15881000 26212000 1649300 32606000 27184000 40058000 20097000 25243000 24144000 30383000 23919000 10 10 5 10 10 10 10 10 10 10 10 9551500 15296000 80498 17569000 21043000 30889000 13201000 13306000 13313000 17829000 13501000 8893700 14282000 984060 17962000 19982000 30251000 13803000 14552000 13545000 17226000 13018000 5 5 3 5 5 5 5 5 5 5 5 7503800 12778000 51018 14555000 7549500 9281100 5983200 10483000 10591000 13602000 11324000 6987100 11930000 665220 14644000 7202100 9807300 6293500 10691000 10599000 13156000 10901000 5 5 2 5 5 5 5 5 5 5 5 5700900000 3428800000 2272100000 5893 1730 5494 31490;31491;31492;31493;31494;31495;31496;31497;31498 37599;37600;37601;37602;37603;37604;37605;37606;37607 37607 9 FRIEDSFSVK Unmodified 1226.6295 0.62953741 46 CON__P41361 yes yes 0 0 0 1 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 55.048 55.381 3 9.077E-08 18018 20211116_3446_TMUAki_TMT10x_S_F7 119.74 62.395 + 7658500 16081000 173340 11764000 10769000 13073000 9106300 9385800 12063000 10481000 11291000 7132100 14989000 840050 12326000 10295000 13154000 9415400 9761800 12115000 10191000 10916000 2 2 2 2 2 2 2 2 2 2 2 3836100 9114600 107490 5728600 6745600 8995200 5442500 4874700 7410200 5957200 6138900 3572600 8492300 458960 6132100 6441700 8869600 5649600 5196600 7407400 5773600 5961400 1 1 1 1 1 1 1 1 1 1 1 3822400 6966100 65850 6035300 4023600 4077800 3663800 4511100 4652900 4523800 5152200 3559500 6496600 381090 6193500 3853000 4284700 3765800 4565100 4707900 4417700 4954700 1 1 1 1 1 1 1 1 1 1 1 869470000 659130000 210340000 5894 46 5495 31499;31500;31501 37608;37609;37610 37609 3 FRISLGLPVGAVINCADNTGAK Unmodified 2272.1998 0.1997858 1369 P62829 RPL23 60S ribosomal protein L23 yes yes 0 0 0 1 By MS/MS By MS/MS 4.25 0.433 3 1 2 2 75.652 75.647 3;4 1.6795E-35 25302 20211116_3442_TMUAki_TMT10x_S_F4 193.59 183.93 12361000 19555000 137760 19195000 13939000 18810000 13295000 11879000 10186000 11204000 12285000 11510000 18246000 1158200 19602000 13356000 19030000 13423000 12407000 10573000 10970000 11786000 5 5 4 5 5 5 5 5 5 5 5 9976500 15450000 112410 15278000 9122100 16684000 10681000 9469800 8318100 9134700 9629400 9289800 14416000 902800 15620000 8791600 16748000 10680000 9982300 8612200 8935200 9248500 4 4 3 4 4 4 4 4 4 4 4 2384600 4104900 25354 3916400 4816700 2125800 2613500 2408900 1868300 2069500 2655300 2220500 3829600 255400 3981900 4564600 2282400 2743100 2424700 1961200 2035100 2537100 1 1 1 1 1 1 1 1 1 1 1 2419100000 1765500000 653540000 5895 1369 5496 31502;31503;31504;31505 37611;37612;37613;37614;37615 37615 5 FRLDNLLNMAYGVK Oxidation (M) 1668.8658 0.86576171 815;1717 P26378;P26378-4;P26378-2;P26378-5;P26378-1;P26378-3;Q12926;Q14576-2;Q14576 ELAVL4;ELAVL2;ELAVL3 ELAV-like protein 4;ELAV-like protein 2;ELAV-like protein 3 no no 0 0 1 1 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 74.096 74.025 3 9.6989E-08 23306 20211116_3444_TMUAki_TMT10x_S_F5 121.24 97.397 36943000 61417000 1669800 58894000 45545000 66102000 41708000 48194000 42280000 44620000 49074000 34409000 57299000 4642300 60367000 43669000 66493000 42524000 49797000 43229000 43725000 47130000 7 7 6 7 7 7 7 7 7 7 7 22920000 34585000 609240 35702000 25984000 49083000 25030000 26491000 23661000 26384000 28285000 21345000 32276000 2413700 36543000 24921000 48669000 25397000 28071000 24295000 25772000 27142000 4 4 3 4 4 4 4 4 4 4 4 14023000 26832000 1060500 23191000 19561000 17019000 16677000 21703000 18620000 18236000 20789000 13064000 25023000 2228500 23824000 18748000 17824000 17127000 21726000 18934000 17953000 19987000 3 3 3 3 3 3 3 3 3 3 3 6706800000 3707500000 2999200000 5896 815;1717 5497 31506;31507;31508;31509;31510;31511 37616;37617;37618;37619;37620;37621;37622 37622 968 7 FRLDNLLNMAYGVK Unmodified 1652.8708 0.87084709 815;1717 P26378;P26378-4;P26378-2;P26378-5;P26378-1;P26378-3;Q12926;Q14576-2;Q14576 ELAVL4;ELAVL2;ELAVL3 ELAV-like protein 4;ELAV-like protein 2;ELAV-like protein 3 no no 0 0 0 1 By MS/MS By matching 6 0 2 1 1 78.511 78.49 3 0.031375 25160 20211116_3434_TMUAki_TMT10x_P_F6 43.798 22.845 5275300 8062600 1950.2 7851500 5211000 8449600 6177500 3968300 3791900 4200500 5379100 4911900 7522400 438280 8033700 5020900 8470300 6141700 4267800 4018300 4092900 5139900 1 1 1 1 1 1 1 1 1 1 1 5275300 8062600 1950.2 7851500 5211000 8449600 6177500 3968300 3791900 4200500 5379100 4911900 7522400 438280 8033700 5020900 8470300 6141700 4267800 4018300 4092900 5139900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1390700000 608250000 782470000 5897 815;1717 5497 31512;31513 37623 37623 1 FRLDNLLNMAYGVKR Oxidation (M) 1824.9669 0.96687274 815;1717 P26378;P26378-4;P26378-2;P26378-5;P26378-1;P26378-3;Q12926;Q14576-2 ELAVL4;ELAVL2;ELAVL3 ELAV-like protein 4;ELAV-like protein 2;ELAV-like protein 3 no no 0 0 1 2 By MS/MS 6.5 0.5 1 1 2 64.466 64.785 4 0.013315 19574 20211116_3434_TMUAki_TMT10x_P_F6 52.966 38.708 2666400 4405500 0 3765500 3501400 6904700 3630900 5632100 3799700 3715600 3894100 2482500 4108400 219820 3933600 3359700 6811800 3681400 5733200 3861500 3707800 3753600 1 1 0 1 1 1 1 1 1 1 1 2666400 4405500 0 3765500 3501400 6904700 3630900 5632100 3799700 3715600 3894100 2482500 4108400 219820 3933600 3359700 6811800 3681400 5733200 3861500 3707800 3753600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1146900000 1146900000 0 5898 815;1717 5498 31514;31515 37624 37624 968 1 FRNPPGGDNLEER Unmodified 1499.7117 0.71170391 2964 Q9NV96;Q9NV96-2;Q9NV96-3 TMEM30A Cell cycle control protein 50A yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 32.969 32.863 3 1.3611E-06 7547 20211116_3431_TMUAki_TMT10x_P_F4 116.96 93.212 715040 1236600 7133.6 1331800 1531000 1410600 1037800 922790 1116600 854590 1198400 665810 1154200 75846 1353100 1455900 1421200 1080900 960810 1135400 837450 1153500 2 2 1 2 2 2 2 2 2 2 2 516780 918260 7133.6 931540 1347400 1235200 844230 687280 845280 625320 910850 481230 856880 61126 953930 1279700 1227300 882680 724580 862200 613270 876640 1 1 1 1 1 1 1 1 1 1 1 198250 318290 0 400250 183620 175370 193570 235510 271280 229280 287530 184580 297310 14719 399170 176220 193880 198230 236230 273160 224180 276870 1 1 0 1 1 1 1 1 1 1 1 77804000 60780000 17024000 5899 2964 5499 31516;31517 37625;37626 37625 2 FRPLNEAEILR Unmodified 1356.7514 0.75138388 262 O60282 KIF5C Kinesin heavy chain isoform 5C yes yes 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 49.652 50.136 3 1.8293E-07 15345 20211116_3435_TMUAki_TMT10x_P_F7 112.02 66.655 8733300 14377000 120910 12845000 10351000 8434800 7779100 12944000 10984000 11335000 12065000 8132500 13409000 859390 13146000 9867500 8966200 8124400 12885000 11073000 11137000 11605000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8733300 14377000 120910 12845000 10351000 8434800 7779100 12944000 10984000 11335000 12065000 8132500 13409000 859390 13146000 9867500 8966200 8124400 12885000 11073000 11137000 11605000 2 2 2 2 2 2 2 2 2 2 2 382420000 0 382420000 5900 262 5500 31518;31519 37627;37628;37629 37627 3 FRPLNESEVNRGDK Unmodified 1659.8329 0.83288168 906 P33176 KIF5B Kinesin-1 heavy chain yes yes 0 0 0 2 By MS/MS 4.5 0.5 1 1 2 34.06 34.049 4 1.7387E-06 8285 20211116_3433_TMUAki_TMT10x_P_F5 116.78 88.147 2528600 4094300 48483 4421200 6250900 4927700 3030900 1844100 2536300 1790800 3526500 2354600 3821700 293050 4494800 5914700 4919400 3227500 2029000 2637000 1751200 3371300 2 2 1 2 2 2 2 2 2 2 2 2528600 4094300 48483 4421200 6250900 4927700 3030900 1844100 2536300 1790800 3526500 2354600 3821700 293050 4494800 5914700 4919400 3227500 2029000 2637000 1751200 3371300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 148360000 148360000 0 5901 906 5501 31520;31521 37630;37631 37630 2 FRPLQLETINVTMAGK Oxidation (M) 1832.9819 0.9818541 1041 P46063 RECQL ATP-dependent DNA helicase Q1 yes yes 0 0 1 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 61.225 60.914 3 0.0010186 21689 20211116_3441_TMUAki_TMT10x_S_F3 64.04 50.134 25458000 46516000 233490 49140000 22643000 27880000 21713000 38369000 37591000 36641000 37288000 23705000 43414000 2156200 49628000 21694000 29949000 22565000 38430000 37537000 35857000 35979000 4 4 2 4 4 4 4 4 4 4 4 3249400 4928800 0 5145200 4175000 7253400 3996300 4276700 3993700 3770600 3818300 3025100 4599900 226260 5265200 3995000 7192400 4062800 4483300 4056800 3703400 3688800 1 1 0 1 1 1 1 1 1 1 1 22209000 41587000 233490 43995000 18468000 20627000 17717000 34093000 33597000 32870000 33469000 20680000 38814000 1929900 44363000 17699000 22757000 18502000 33947000 33480000 32153000 32291000 3 3 2 3 3 3 3 3 3 3 3 2665300000 1143700000 1521600000 5902 1041 5502 31522;31523;31524 37632;37633;37634;37635 37635 1347 4 FRPLQLETINVTMAGK Unmodified 1816.9869 0.98693948 1041 P46063 RECQL ATP-dependent DNA helicase Q1 yes yes 0 0 0 1 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 67.519 67.335 3 7.8702E-22 23270 20211116_3430_TMUAki_TMT10x_P_F3 151.9 134.65 26579000 43466000 196220 45922000 27703000 30841000 31440000 19388000 16622000 20558000 30073000 24749000 40568000 2382800 46449000 26668000 32092000 31237000 20326000 18036000 20030000 28594000 5 5 4 5 5 5 5 5 5 5 5 12042000 18718000 30939 19864000 12307000 17582000 15368000 7638700 6481600 8473800 12222000 11212000 17471000 1011500 20149000 11878000 17828000 15153000 8293300 7186400 8241500 11612000 2 2 1 2 2 2 2 2 2 2 2 14537000 24748000 165280 26059000 15396000 13260000 16072000 11750000 10140000 12084000 17851000 13537000 23097000 1371300 26300000 14789000 14264000 16083000 12033000 10849000 11788000 16982000 3 3 3 3 3 3 3 3 3 3 3 1824000000 661570000 1162400000 5903 1041 5502 31525;31526;31527;31528;31529 37636;37637;37638;37639;37640;37641;37642 37637 7 FRPPETTER Unmodified 1131.5673 0.5672715 2533 Q96P70 IPO9 Importin-9 yes yes 0 0 0 1 By MS/MS 4 0 1 1 30.317 30.356 3 0.00019979 6548 20211116_3431_TMUAki_TMT10x_P_F4 125.75 80.379 606300 1081000 22344 1179200 901690 1103400 630930 569010 535740 544400 689680 564690 1009100 75227 1194900 859130 1116700 651190 604760 554650 532710 660550 1 1 1 1 1 1 1 1 1 1 1 606300 1081000 22344 1179200 901690 1103400 630930 569010 535740 544400 689680 564690 1009100 75227 1194900 859130 1116700 651190 604760 554650 532710 660550 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25641000 25641000 0 5904 2533 5503 31530 37643 37643 1 FRPSLEER Unmodified 1032.5352 0.53524309 922 P35221;P35221-2;P26232;P26232-3;P26232-2;P26232-5 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 32.781 32.764 3 0.0027159 7507 20211116_3431_TMUAki_TMT10x_P_F4 96.143 58.415 1297800 2177700 8081.4 2228700 3095400 2667800 1616300 1627300 1843700 1423500 1859800 1208500 2032200 140310 2276600 2931300 2667300 1723800 1701000 1866300 1398600 1793600 2 2 2 2 2 2 2 2 2 2 2 1297800 2177700 8081.4 2228700 3095400 2667800 1616300 1627300 1843700 1423500 1859800 1208500 2032200 140310 2276600 2931300 2667300 1723800 1701000 1866300 1398600 1793600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 110380000 110380000 0 5905 922 5504 31531;31532 37644;37645 37644 2 FRPVPGSALQIFELCAQEQR Unmodified 2345.195 0.19503477 2204 Q8N6R0;Q8N6R0-3;Q8N6R0-4;Q8N6R0-2 METTL13 Methyltransferase-like protein 13 yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 73.379 73.242 3 1.095E-24 25029 20211116_3429_TMUAki_TMT10x_P_F2 173.49 163.7 7080300 11704000 0 10127000 8127800 9301700 8726300 7652100 6627800 8272200 8936000 6591400 10915000 465160 10431000 7799500 9489900 8755200 7881900 6916400 8053600 8548800 3 3 0 3 3 3 3 3 3 3 3 2599900 4211000 0 3408400 2383400 4528100 2761800 2623700 2388300 2989500 2900400 2420000 3926300 125540 3550500 2289200 4501100 2770100 2774700 2464200 2904700 2782000 1 1 0 1 1 1 1 1 1 1 1 4480500 7492600 0 6719000 5744300 4773600 5964400 5028300 4239500 5282700 6035700 4171300 6988500 339620 6880100 5510300 4988800 5985100 5107200 4452200 5148900 5766800 2 2 0 2 2 2 2 2 2 2 2 1756700000 891760000 864920000 5906 2204 5505 31533;31534 37646;37647;37648 37646 3 FRQDLMNIAGTTLSSK Oxidation (M) 1796.9091 0.90908309 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 1 1 By MS/MS By MS/MS 2.57 2.26 2 4 1 5 2 60.491 60.327 2;3;4 1.5827E-07 19790 20211116_3429_TMUAki_TMT10x_P_F2 114.06 88.198 65768000 110990000 879320 113320000 96183000 129260000 74132000 97547000 107290000 92945000 94986000 61240000 103570000 6314200 115680000 91698000 129990000 77375000 100640000 107260000 90964000 92011000 15 15 8 15 15 15 15 15 15 15 15 44816000 73127000 684800 75862000 74391000 109190000 55670000 65532000 73564000 62354000 63051000 41730000 68246000 4438500 77697000 70879000 108200000 58001000 68737000 73683000 61029000 61148000 10 10 5 10 10 10 10 10 10 10 10 20953000 37861000 194520 37462000 21792000 20071000 18463000 32015000 33729000 30591000 31935000 19510000 35326000 1875700 37986000 20819000 21788000 19374000 31905000 33581000 29935000 30862000 5 5 3 5 5 5 5 5 5 5 5 11004000000 7354400000 3650000000 5907 1429 5506 31535;31536;31537;31538;31539;31540;31541 37649;37650;37651;37652;37653;37654;37655;37656;37657;37658;37659;37660;37661;37662;37663 37652 1926 15 FRQDLMNIAGTTLSSK Unmodified 1780.9142 0.91416847 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 1 By MS/MS By MS/MS 2.56 0.831 1 3 4 1 4 5 68.628 68.339 2;3;4 6.9625E-66 24727 20211116_3441_TMUAki_TMT10x_S_F3 266.2 226.05 69389000 108860000 663060 127480000 77423000 88132000 73840000 43840000 37517000 47179000 75773000 64608000 101650000 5868900 128150000 74154000 91215000 73962000 46909000 41114000 45940000 71912000 11 11 7 11 10 11 11 11 11 11 11 41915000 65440000 438110 73814000 49593000 69819000 48057000 29903000 26161000 31891000 46240000 39026000 61094000 3482700 74652000 47514000 70477000 48149000 32477000 28285000 31065000 43985000 7 7 4 7 6 7 7 7 7 7 7 27474000 43422000 224940 53669000 27831000 18312000 25783000 13937000 11356000 15288000 29533000 25582000 40556000 2386200 53499000 26641000 20738000 25814000 14432000 12829000 14875000 27927000 4 4 3 4 4 4 4 4 4 4 4 9389000000 5442900000 3946100000 5908 1429 5506 31542;31543;31544;31545;31546;31547;31548;31549;31550 37664;37665;37666;37667;37668;37669;37670;37671;37672;37673;37674;37675;37676 37675 13 FRQFGYQDSPGPR Unmodified 1553.7375 0.73752473 700 P17028;P17028-2 ZNF24 Zinc finger protein 24 yes no 0 0 0 1 By MS/MS By MS/MS 4.75 3.27 1 1 2 2 2 38.151 38.42 3 9.8783E-09 9519 20211116_3428_TMUAki_TMT10x_P_F1 119.96 105.54 745400 1194600 274.61 1347200 1022100 1074700 797850 990330 1125300 848240 1042500 693970 1115200 56277 1359500 973760 1109800 831160 1006900 1127500 834290 1008300 2 2 1 2 2 2 2 2 2 2 2 301430 489690 0 499590 636100 720920 403990 428900 505490 314240 441030 280580 456970 20025 512270 603460 714210 425060 447380 507520 311620 427440 1 1 0 1 1 1 1 1 1 1 1 443970 704870 274.61 847610 385970 353820 393870 561430 619780 534000 601510 413380 658250 36252 847230 370300 395580 406100 559530 619990 522660 580820 1 1 1 1 1 1 1 1 1 1 1 53524000 23569000 29955000 5909 700 5507 31551;31552;31553;31554 37677;37678;37679 37677 3 FRQHMENEMAHYACDCWDAESK 2 Oxidation (M) 2846.0942 0.094152809 1001 P41250 GARS Glycine--tRNA ligase yes yes 0 0 2 1 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 35.388 35.489 5 0.0003669 8593 20211116_3431_TMUAki_TMT10x_P_F4 62.589 56.748 658460 1187100 9615.4 1207800 1797900 2014300 1231800 1175600 1010400 1032200 1284800 613100 1107800 70952 1242700 1709700 1983400 1272200 1233300 1047400 1014000 1230900 2 2 1 2 2 2 2 2 2 2 2 504560 877980 0 896510 1625600 1885100 1107900 927900 749480 809100 993250 469730 819310 48973 928060 1545100 1837900 1139800 988180 786810 795100 950610 1 1 0 1 1 1 1 1 1 1 1 153900 309160 9615.4 311240 172380 129170 123930 247660 260960 223100 291560 143370 288490 21980 314650 164650 145490 132480 245080 260570 218900 280310 1 1 1 1 1 1 1 1 1 1 1 186790000 134680000 52115000 5910 1001 5508 31555;31556 37680;37681 37680 1288;1289 2 FRREEDAEK Unmodified 1178.568 0.56799978 597 Q01081;P0DN76;Q01081-2;Q01081-4 U2AF1 Splicing factor U2AF 35 kDa subunit yes no 0 0 0 2 By MS/MS By MS/MS 3.25 0.829 1 1 2 3 1 28.075 27.969 3;4 0.0020472 8295 20211116_3441_TMUAki_TMT10x_S_F3 83.883 45.75 477810 803240 39.072 714970 583500 647290 570680 395380 448010 421510 593570 444860 749180 37848 734610 558950 657930 575740 415490 466310 410590 568090 3 3 1 3 3 3 3 3 3 3 3 297790 465220 0 410300 342240 455450 300150 219520 251020 252930 366810 277250 433900 22029 423130 326890 455900 305130 236100 261630 245650 350270 2 2 0 2 2 2 2 2 2 2 2 180010 338020 39.072 304660 241260 191840 270540 175860 196990 168580 226760 167610 315280 15818 311480 232070 202030 270610 179390 204680 164940 217820 1 1 1 1 1 1 1 1 1 1 1 17130000 10275000 6854100 5911 597 5509 31557;31558;31559;31560 37682;37683;37684 37684 3 FRSETITEEELVGLMNK Oxidation (M) 2010.9932 0.99320665 691 P16152 CBR1 Carbonyl reductase [NADPH] 1 yes yes 0 0 1 1 By MS/MS By MS/MS 4 0 2 1 1 61.483 61.357 3 6.0547E-15 19052 20211116_3431_TMUAki_TMT10x_P_F4 126.16 88.984 1446200 2576800 37515 2541100 1711000 1778700 1704400 2420000 2144400 2007500 2211700 1346800 2404300 158570 2583500 1642700 1873500 1742800 2415800 2164700 1977600 2131500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1446200 2576800 37515 2541100 1711000 1778700 1704400 2420000 2144400 2007500 2211700 1346800 2404300 158570 2583500 1642700 1873500 1742800 2415800 2164700 1977600 2131500 1 1 1 1 1 1 1 1 1 1 1 283480000 0 283480000 5912 691 5510 31561;31562 37685;37686 37685 776 2 FRSHEGETAYIR Unmodified 1464.711 0.71097563 1543 Q07955 SRSF1 Serine/arginine-rich splicing factor 1 yes yes 0 0 0 1 By MS/MS 4.5 0.5 2 2 4 30.565 30.549 3;4 2.7658E-08 6535 20211116_3431_TMUAki_TMT10x_P_F4 140.24 115.03 3605900 5690100 100920 5596000 6085800 6066000 3764400 2711200 3143400 2883800 4319300 3358200 5309100 421450 5722600 5782600 6075300 3920600 2931000 3266800 2809300 4130300 5 5 4 5 5 5 5 5 5 5 5 3605900 5690100 100920 5596000 6085800 6066000 3764400 2711200 3143400 2883800 4319300 3358200 5309100 421450 5722600 5782600 6075300 3920600 2931000 3266800 2809300 4130300 5 5 4 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 235830000 235830000 0 5913 1543 5511 31563;31564;31565;31566 37687;37688;37689;37690;37691 37687 5 FSADEFFIPR Unmodified 1227.5924 0.59242362 2147 Q8IWT0;Q8IWT0-2 ZBTB8OS Protein archease yes no 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 74.402 74.394 2 4.1638E-06 23838 20211116_3445_TMUAki_TMT10x_S_F6 143.7 122.2 8378300 14130000 28870 13656000 10293000 10995000 10726000 8979900 8027400 8852600 10701000 7801000 13183000 719760 13925000 9879800 11320000 10774000 9228000 8379500 8651100 10240000 3 3 1 3 3 3 3 3 3 3 3 2672700 4435700 0 4156500 2527600 4421500 3203700 2769900 2525000 2694900 3240000 2488400 4137900 203960 4264000 2439500 4450900 3193300 2897400 2623800 2635100 3103400 1 1 0 1 1 1 1 1 1 1 1 5705600 9694100 28870 9499700 7765000 6573700 7522400 6209900 5502500 6157600 7461200 5312600 9044900 515810 9661200 7440300 6869100 7580500 6330600 5755700 6016000 7136900 2 2 1 2 2 2 2 2 2 2 2 1346800000 783170000 563590000 5914 2147 5512 31567;31568;31569;31570;31571 37692;37693;37694 37694 3 FSAFLEK Unmodified 840.43815 0.43815481 620 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 By MS/MS 8 0 2 2 63.765 63.946 2 0.012244 19784 20211116_3436_TMUAki_TMT10x_P_F8 96.253 16.073 4767800 8016900 0 7100900 9788600 12516000 6508100 7436700 7379600 6579400 7570600 4438900 7477200 413990 7389700 9299900 12302000 6799900 7791800 7476200 6461100 7297200 1 1 0 1 1 1 1 1 1 1 1 4767800 8016900 0 7100900 9788600 12516000 6508100 7436700 7379600 6579400 7570600 4438900 7477200 413990 7389700 9299900 12302000 6799900 7791800 7476200 6461100 7297200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 357380000 357380000 0 5915 620 5513 31572;31573 37695;37696 37695 2 FSAIQCAAAVPR Unmodified 1289.655 0.65504065 1764 Q15054;Q15054-3;Q15054-2 POLD3 DNA polymerase delta subunit 3 yes no 0 0 0 0 By MS/MS 2 0 1 1 51.333 51.074 2 0.0094944 16031 20211116_3429_TMUAki_TMT10x_P_F2 66.617 36.478 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5916 1764 5514 31574 37697 37697 1 FSALQQAVPTESTDNRR Unmodified 1918.9497 0.94970235 1511 Q04637;Q04637-3;Q04637-8;Q04637-5;Q04637-4;Q04637-9;Q04637-6;Q04637-7 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 1 By MS/MS By MS/MS 6.2 0.748 1 2 2 2 3 44.83 45.113 3 9.1873E-30 13762 20211116_3446_TMUAki_TMT10x_S_F7 195.46 168.91 5814500 10900000 74161 12932000 11497000 11558000 6959100 10794000 10731000 7956400 10568000 5414000 10179000 512760 13029000 10911000 11842000 7412900 10928000 10746000 7887600 10199000 6 6 3 6 6 6 6 6 6 6 6 3285800 6179900 58453 6957500 9664900 9741900 5190100 5834700 6213100 4446200 5718900 3059600 5769400 382350 7084500 9156000 9664800 5530200 6088000 6258500 4399600 5532100 3 3 2 3 3 3 3 3 3 3 3 2528700 4720500 15708 5974900 1831700 1815900 1768900 4959600 4517800 3510200 4848900 2354500 4409400 130410 5944600 1754800 2177100 1882700 4840500 4487500 3488000 4667400 3 3 1 3 3 3 3 3 3 3 3 2120200000 1356700000 763500000 5917 1511 5515 31575;31576;31577;31578;31579 37698;37699;37700;37701;37702;37703 37702 6 FSAPVVPSSFNFGGPAPGMN Oxidation (M) 1994.9196 0.91964777 425 O95373 IPO7 Importin-7 yes yes 0 0 1 0 By MS/MS By MS/MS 2 0 4 2 2 79.476 79.456 2;3 9.7862E-09 27510 20211116_3429_TMUAki_TMT10x_P_F2 114.24 108.52 8313900 14445000 39367 11521000 8828600 14138000 9768000 8858200 9418900 9122600 10769000 7741200 13467000 416470 11999000 8490700 14123000 9848200 9280700 9645300 8898700 10347000 4 4 2 4 4 4 4 4 4 4 4 3758800 7026900 23148 6221400 3365200 8685300 4130900 3914700 4447400 4841600 4953600 3499900 6553800 318560 6440600 3246800 8588800 4159900 4248700 4528600 4690300 4762900 2 2 1 2 2 2 2 2 2 2 2 4555100 7417700 16219 5299300 5463400 5452700 5637100 4943500 4971500 4281100 5815300 4241400 6913600 97917 5558100 5243900 5533900 5688300 5032100 5116700 4208400 5583700 2 2 1 2 2 2 2 2 2 2 2 7657300000 4890600000 2766800000 5918 425 5516 31580;31581;31582;31583 37704;37705;37706;37707 37705 317 4 FSAPVVPSSFNFGGPAPGMN Unmodified 1978.9247 0.92473315 425 O95373 IPO7 Importin-7 yes yes 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 80.282 80.253 3 3.0485E-07 27852 20211116_3429_TMUAki_TMT10x_P_F2 98.035 89.965 2331400 3689000 97295 3789500 2380400 2971700 2662000 1569600 1259000 1550500 2620600 2171500 3442600 284650 3846600 2295400 3046300 2642000 1666100 1390500 1515100 2485900 2 2 2 2 2 2 2 2 2 2 2 1344400 2058200 83323 2157100 1236000 1972000 1410300 897860 726870 830260 1373700 1252400 1920900 187600 2190900 1194500 1996200 1400300 965070 792330 813660 1305100 1 1 1 1 1 1 1 1 1 1 1 986940 1630700 13972 1632400 1144400 999750 1251700 671740 532110 720230 1246900 919050 1521700 97051 1655700 1100900 1050100 1241700 700990 598180 701420 1180800 1 1 1 1 1 1 1 1 1 1 1 2573400000 1165600000 1407800000 5919 425 5516 31584;31585;31586 37708;37709 37708 2 FSASGELGNGNIK Unmodified 1292.6361 0.63607935 635 P12004 PCNA Proliferating cell nuclear antigen yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 4 4 3 5 49.086 49.24 2;3 3.1428E-28 13283 20211116_3444_TMUAki_TMT10x_S_F5 216.35 170.22 25437000 37620000 340730 46481000 35152000 30285000 24903000 24721000 29117000 22553000 33428000 23687000 35136000 2558000 46551000 33468000 31726000 25927000 25350000 29590000 22116000 32113000 7 7 6 7 7 7 7 7 7 7 7 9834500 13798000 121730 17742000 22329000 18353000 10846000 9548400 10565000 8665200 12591000 9157800 12890000 1103800 17831000 21129000 18461000 11593000 10126000 10832000 8499300 12083000 3 3 3 3 3 3 3 3 3 3 3 15603000 23821000 219010 28739000 12823000 11932000 14058000 15172000 18552000 13888000 20837000 14530000 22246000 1454200 28720000 12339000 13265000 14334000 15224000 18758000 13616000 20030000 4 4 3 4 4 4 4 4 4 4 4 1866100000 917720000 948400000 5920 635 5517 31587;31588;31589;31590;31591;31592;31593;31594 37710;37711;37712;37713;37714;37715;37716;37717;37718;37719 37715 10 FSAVALCK Unmodified 894.46332 0.4633237 588 P09936 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.43 2.32 3 3 1 3 4 53.759 53.611 2;3 0.0012453 15489 20211116_3428_TMUAki_TMT10x_P_F1 101.28 70.714 32462000 51500000 172660 55145000 50405000 47708000 35339000 41132000 38984000 36853000 44590000 30227000 48069000 3102300 55888000 47962000 48913000 36746000 42024000 39699000 36169000 42841000 4 4 3 4 4 4 4 4 4 4 4 14014000 19633000 57575 20662000 29900000 28509000 15885000 16158000 15621000 14524000 17165000 13049000 18324000 1438000 21123000 28321000 28282000 16838000 17003000 15958000 14252000 16511000 2 2 2 2 2 2 2 2 2 2 2 18448000 31867000 115080 34483000 20505000 19199000 19453000 24974000 23363000 22329000 27425000 17178000 29745000 1664300 34765000 19642000 20631000 19908000 25021000 23741000 21916000 26330000 2 2 1 2 2 2 2 2 2 2 2 4621200000 3216800000 1404400000 5921 588 5518 31595;31596;31597;31598;31599;31600;31601 37720;37721;37722;37723;37724;37725 37720 6 FSAVLVEPPPMSLPGAGLSSQELSGGPGDGP Unmodified 2949.443 0.44298878 1615 Q13263;Q13263-2 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 0 By MS/MS By MS/MS 5.44 1.81 2 2 4 4 5 4 4 12 13 81.997 82.001 3;4 1.9502E-10 29032 20211116_3446_TMUAki_TMT10x_S_F7 90.968 82.473 27823000 45857000 627790 47115000 31032000 36758000 34458000 18705000 17928000 21540000 31687000 25910000 42795000 2596600 47821000 29871000 37679000 34261000 20014000 19450000 20920000 30141000 29 29 21 29 29 29 29 29 29 29 29 15856000 25141000 352040 25951000 15823000 24196000 18001000 10804000 10664000 12346000 17825000 14765000 23462000 1555600 26391000 15242000 24456000 17918000 11707000 11424000 11994000 16974000 14 14 10 14 14 14 14 14 14 14 14 11967000 20716000 275750 21164000 15209000 12562000 16457000 7900500 7263900 9193500 13861000 11144000 19332000 1041000 21430000 14628000 13223000 16343000 8306700 8026200 8925600 13167000 15 15 11 15 15 15 15 15 15 15 15 11732000000 5998700000 5732900000 5922 1615 5519 31602;31603;31604;31605;31606;31607;31608;31609;31610;31611;31612;31613;31614;31615;31616;31617;31618;31619;31620;31621;31622;31623;31624;31625;31626 37726;37727;37728;37729;37730;37731;37732;37733;37734;37735;37736;37737;37738;37739;37740;37741;37742;37743;37744;37745;37746;37747;37748;37749;37750;37751;37752;37753;37754;37755 37752 30 FSAVLVEPPPMSLPGAGLSSQELSGGPGDGP Oxidation (M) 2965.4379 0.4379034 1615 Q13263;Q13263-2 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 1 0 By MS/MS By MS/MS 5.2 1.25 1 2 3 2 2 6 4 80.39 80.397 3;4 0.00086934 27105 20211116_3433_TMUAki_TMT10x_P_F5 63.029 60.228 75125000 130580000 11258000 159420000 104240000 115040000 97557000 90000000 59897000 70445000 112570000 70032000 121950000 17040000 159930000 100460000 119370000 98140000 92184000 64452000 69606000 106960000 13 13 9 13 13 13 13 13 13 13 13 36088000 58966000 3083000 68683000 43949000 73622000 50441000 34961000 25978000 29332000 42866000 33624000 55058000 5903900 69455000 42486000 73828000 50068000 37329000 28098000 28879000 40828000 8 8 6 8 8 8 8 8 8 8 8 39037000 71613000 8175000 90738000 60292000 41422000 47115000 55038000 33920000 41113000 69703000 36408000 66894000 11137000 90479000 57974000 45546000 48072000 54855000 36354000 40727000 66132000 5 5 3 5 5 5 5 5 5 5 5 14388000000 9966400000 4421500000 5923 1615 5519 31627;31628;31629;31630;31631;31632;31633;31634;31635;31636 37756;37757;37758;37759;37760;37761;37762;37763;37764;37765;37766 37760 2163 11 FSCPPNFTAKPPASESPR Unmodified 1988.9414 0.94144585 191 O15446;O15446-2 CD3EAP DNA-directed RNA polymerase I subunit RPA34 yes no 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 47.439 47.152 3 1.5068E-15 12896 20211116_3428_TMUAki_TMT10x_P_F1 138.28 132.57 941510 1678900 0 1932200 2406700 2532900 1585500 1422700 1549800 1156600 1366400 876600 1567600 93887 1962200 2286700 2518400 1650100 1494600 1571700 1140500 1323800 1 1 0 1 1 1 1 1 1 1 1 941510 1678900 0 1932200 2406700 2532900 1585500 1422700 1549800 1156600 1366400 876600 1567600 93887 1962200 2286700 2518400 1650100 1494600 1571700 1140500 1323800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 327990000 327990000 0 5924 191 5520 31637;31638 37767;37768 37767 2 FSDFLLDPYK Unmodified 1243.6125 0.61249036 3135 Q9UIG0;Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B yes no 0 0 0 0 By MS/MS 6 0 1 1 78.818 78.8 2 0.060628 25615 20211116_3445_TMUAki_TMT10x_S_F6 60.563 40.777 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5925 3135 5521 31639 37769 37769 1 FSDIQIR Unmodified 877.46577 0.46576654 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS 5 0 1 1 47.57 47.741 2 0.041326 13733 20211116_3433_TMUAki_TMT10x_P_F5 67.903 16.446 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5926 629 5522 31640 37770 37770 1 FSDQFPLPLK Unmodified 1190.6336 0.63356015 2381 Q92973;Q92973-2;Q92973-3 TNPO1 Transportin-1 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 2 4 3 3 75.161 75.116 2;3 1.2662E-09 26173 20211116_3446_TMUAki_TMT10x_S_F7 163.64 116.56 24436000 40146000 40170 38840000 30676000 45809000 31615000 30281000 31597000 31521000 33334000 22751000 37456000 1896100 39820000 29423000 45889000 32019000 31609000 32207000 30734000 32103000 5 5 1 5 5 5 5 5 5 5 5 17461000 28415000 40170 27249000 22462000 38324000 23332000 21848000 22951000 22907000 23237000 16257000 26510000 1426700 28047000 21553000 37988000 23609000 23077000 23375000 22328000 22407000 3 3 1 3 3 3 3 3 3 3 3 6975400 11731000 0 11591000 8214500 7485500 8283200 8433200 8646100 8614600 10097000 6493800 10946000 469400 11773000 7869900 7900300 8409700 8531900 8831600 8406000 9695700 2 2 0 2 2 2 2 2 2 2 2 3166600000 1711600000 1455000000 5927 2381 5523 31641;31642;31643;31644;31645;31646 37771;37772;37773;37774;37775;37776;37777 37775 7 FSDSYASVIK Unmodified 1115.5499 0.5498901 709 P17812;P17812-2 CTPS1 CTP synthase 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 57.002 57.057 2 6.6544E-09 16339 20211116_3434_TMUAki_TMT10x_P_F6 146.88 100.32 2895200 4957800 0 6496800 2555700 2423400 2242100 5557600 5485200 4477200 5774800 2695700 4631900 228650 6458200 2442200 2790400 2391100 5460100 5448600 4417200 5561800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2895200 4957800 0 6496800 2555700 2423400 2242100 5557600 5485200 4477200 5774800 2695700 4631900 228650 6458200 2442200 2790400 2391100 5460100 5448600 4417200 5561800 1 1 0 1 1 1 1 1 1 1 1 345870000 0 345870000 5928 709 5524 31647;31648;31649 37778;37779;37780 37778 3 FSEEQRFNNFLK Unmodified 1557.7576 0.75759147 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 1 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 55.444 55.844 3 4.8382E-06 18237 20211116_3446_TMUAki_TMT10x_S_F7 111.39 93.882 63356000 104940000 946390 119030000 76613000 97919000 66056000 95564000 100010000 93692000 95779000 58998000 97971000 6320300 120120000 73252000 101000000 68606000 97226000 100110000 91582000 92526000 6 6 6 6 6 6 6 6 6 6 6 23543000 37439000 202450 40462000 37565000 57791000 30856000 35814000 37770000 34343000 33606000 21922000 34946000 2336900 41324000 35863000 57311000 31864000 37478000 37974000 33601000 32547000 2 2 2 2 2 2 2 2 2 2 2 39814000 67499000 743940 78568000 39048000 40129000 35200000 59750000 62240000 59350000 62174000 37076000 63025000 3983400 78796000 37389000 43692000 36743000 59748000 62132000 57980000 59979000 4 4 4 4 4 4 4 4 4 4 4 1986700000 841130000 1145600000 5929 648 5525 31650;31651;31652 37781;37782;37783;37784;37785;37786 37785 6 FSEGTSADREIQR Unmodified 1494.7063 0.70628418 1357 P62333 PSMC6 26S protease regulatory subunit 10B yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 31.952 31.796 3 3.7561E-15 9738 20211116_3441_TMUAki_TMT10x_S_F3 175.88 141.38 626110 956170 16608 1040900 1118200 972030 726790 635110 702660 570040 877520 583100 892520 74280 1054900 1063400 986920 756930 660790 722090 559410 841100 2 2 2 2 2 2 2 2 2 2 2 423890 612610 8767.3 676260 888710 753480 481090 424150 441220 383490 553640 394750 571870 49825 686560 842420 755430 508060 446650 454600 376210 530600 1 1 1 1 1 1 1 1 1 1 1 202220 343550 7841.2 364640 229530 218560 245700 210960 261440 186550 323880 188350 320650 24456 368320 220970 231490 248870 214140 267490 183200 310500 1 1 1 1 1 1 1 1 1 1 1 93036000 47646000 45390000 5930 1357 5526 31653;31654;31655 37787;37788 37788 2 FSELPTQMFPEGATPAEITK Oxidation (M) 2209.0613 0.061286213 3258 Q9Y312 AAR2 Protein AAR2 homolog yes yes 0 0 1 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 71.003 70.987 3 1.0464E-06 22050 20211116_3434_TMUAki_TMT10x_P_F6 87.654 75.678 11104000 18818000 243990 16717000 13070000 16522000 13120000 12197000 11077000 12376000 13928000 10340000 17552000 1157000 17200000 12547000 16747000 13243000 12625000 11459000 12080000 13348000 5 5 4 5 5 5 5 5 5 5 5 4667100 8186700 165740 6935100 5085900 9434500 5717400 5265800 4686000 5414600 6007200 4346700 7634400 547260 7200700 4902500 9363400 5734500 5568800 4859200 5282000 5754100 2 2 2 2 2 2 2 2 2 2 2 6436600 10632000 78254 9782100 7984100 7087900 7402800 6931100 6390700 6961300 7920800 5993600 9917400 609780 9999100 7644400 7383300 7508100 7055900 6600000 6797500 7593500 3 3 2 3 3 3 3 3 3 3 3 1454200000 740240000 713910000 5931 3258 5527 31656;31657;31658;31659 37789;37790;37791;37792;37793 37790 3237 5 FSELTAEK Unmodified 923.46001 0.46001246 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 0 By MS/MS 4 0 2 2 49 49.154 2 0.001318 14469 20211116_3442_TMUAki_TMT10x_S_F4 149.65 93.143 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5932 1079 5528 31660;31661 37794;37795 37795 2 FSEPHAR Unmodified 842.4035 0.40350064 706;773 P17612;P17612-2;P22694-10;P22694;P22694-2;P22694-8;P22694-4;P22694-3;P22694-5;P22694-7;P22694-6;P22694-9 PRKACA;PRKACB cAMP-dependent protein kinase catalytic subunit alpha;cAMP-dependent protein kinase catalytic subunit beta no no 0 0 0 0 By matching By MS/MS 2.5 0.5 1 1 1 1 27.087 26.826 3 0.023547 7935 20211116_3441_TMUAki_TMT10x_S_F3 62.717 47.278 159420 345300 9342.2 226370 209640 163450 215960 130590 172880 113790 162950 148510 321760 22627 238400 201740 169660 217390 133930 177410 111830 157500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 159420 345300 9342.2 226370 209640 163450 215960 130590 172880 113790 162950 148510 321760 22627 238400 201740 169660 217390 133930 177410 111830 157500 1 1 1 1 1 1 1 1 1 1 1 4429800 525710 3904100 5933 706;773 5529 31662;31663 37796 37796 1 FSEVLKR Unmodified 877.50215 0.50215205 642 P12277 CKB Creatine kinase B-type yes yes 0 0 0 1 By MS/MS By MS/MS 4 3 2 2 1 3 40.575 40.494 3 0.058513 10761 20211116_3446_TMUAki_TMT10x_S_F7 49.933 22.228 1081100 1708700 12749 1757300 1855200 2184200 677990 1162100 1162100 1132700 1361500 1006700 1594600 112350 1795700 1750000 2175800 764250 1232200 1168100 1107500 1307300 1 1 1 1 1 1 1 1 1 1 1 1081100 1708700 12749 1757300 1855200 2184200 677990 1162100 1162100 1132700 1361500 1006700 1594600 112350 1795700 1750000 2175800 764250 1232200 1168100 1107500 1307300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 246650000 108740000 137910000 5934 642 5530 31664;31665;31666;31667 37797;37798;37799 37799 3 FSFDLGKGEVIK Unmodified 1338.7184 0.71835242 1497 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 0 0 0 1 By MS/MS 8 0 1 1 65.209 65.366 3 0.00012159 20364 20211116_3436_TMUAki_TMT10x_P_F8 94.717 71.041 15511000 22613000 138640 30106000 17963000 26623000 16525000 12905000 13494000 13719000 16694000 14443000 21128000 1449500 30132000 17196000 27028000 16743000 13838000 13974000 13366000 16005000 1 1 1 1 1 1 1 1 1 1 1 15511000 22613000 138640 30106000 17963000 26623000 16525000 12905000 13494000 13719000 16694000 14443000 21128000 1449500 30132000 17196000 27028000 16743000 13838000 13974000 13366000 16005000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 760350000 760350000 0 5935 1497 5531 31668 37800 37800 1 FSFGLLDLPFR Unmodified 1310.7023 0.70230842 20 A6NHR9;A6NHR9-2 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 81.486 81.482 2 0.0046492 27655 20211116_3442_TMUAki_TMT10x_S_F4 70.929 42.186 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5936 20 5532 31669;31670 37801;37802 37802 2 FSFSPEPTLEDIR Unmodified 1536.746 0.74602373 2822 Q9H773 DCTPP1 dCTP pyrophosphatase 1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 71.81 71.657 2 5.8725E-09 23729 20211116_3442_TMUAki_TMT10x_S_F4 124.42 105.64 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5937 2822 5533 31671 37803 37803 1 FSFSPEPTLEDIRR Unmodified 1692.8471 0.84713476 2822 Q9H773 DCTPP1 dCTP pyrophosphatase 1 yes yes 0 0 0 1 By MS/MS By MS/MS 6.23 1.31 2 2 2 5 2 4 9 56.201 56.357 3 2.8266E-37 19535 20211116_3435_TMUAki_TMT10x_P_F7 242.4 222.74 43677000 73747000 501570 75306000 56495000 76735000 52331000 54798000 52879000 54693000 57903000 40670000 68820000 4178200 76736000 54090000 77592000 53316000 56818000 53950000 53420000 55702000 10 10 7 10 10 10 10 10 10 10 10 26210000 43288000 320800 43885000 35377000 58270000 34464000 32239000 30653000 32655000 33621000 24406000 40394000 2542700 44943000 33914000 57889000 34888000 34104000 31457000 31875000 32341000 5 5 4 5 5 5 5 5 5 5 5 17467000 30459000 180770 31421000 21118000 18466000 17867000 22559000 22226000 22038000 24282000 16265000 28425000 1635400 31793000 20176000 19703000 18428000 22714000 22493000 21545000 23361000 5 5 3 5 5 5 5 5 5 5 5 12084000000 6223600000 5860400000 5938 2822 5534 31672;31673;31674;31675;31676;31677;31678;31679;31680;31681;31682;31683;31684 37804;37805;37806;37807;37808;37809;37810;37811;37812;37813;37814;37815;37816;37817;37818 37808 15 FSFTLPYPVK Unmodified 1197.6434 0.64339656 3047 Q9P035;Q9P035-2 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes no 0 0 0 0 By MS/MS By MS/MS 4.25 0.433 3 1 2 2 77.831 77.827 2;3 4.7117E-06 25815 20211116_3431_TMUAki_TMT10x_P_F4 141.48 119.97 11783000 19821000 100610 18566000 13048000 23571000 16265000 12407000 9989100 11740000 14237000 10971000 18491000 1088300 19104000 12598000 23453000 16135000 13158000 10588000 11494000 13602000 2 2 2 2 2 2 2 2 2 2 2 11783000 19821000 100610 18566000 13048000 23571000 16265000 12407000 9989100 11740000 14237000 10971000 18491000 1088300 19104000 12598000 23453000 16135000 13158000 10588000 11494000 13602000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2313700000 1522700000 791030000 5939 3047 5535 31685;31686;31687;31688 37819;37820;37821 37819 3 FSGGFGAR Unmodified 797.38204 0.38203692 104 O00571;O00571-2;O15523;O15523-2 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 0 0 By MS/MS By MS/MS 5 3.29 2 1 2 3 2 38.254 38.462 2 0.0029139 11422 20211116_3439_TMUAki_TMT10x_S_F1 103.75 72.745 11005000 18326000 99558 18345000 17960000 17610000 12457000 18162000 16683000 14142000 17370000 10247000 17100000 1086400 18703000 17088000 17998000 13054000 18318000 16811000 13978000 16735000 9 9 6 9 9 9 9 9 9 9 9 5244200 8547000 59878 8458300 12337000 12933000 7446000 8585800 7871300 6644800 8058100 4883400 7975000 588970 8702100 11710000 12802000 7821700 8890800 7995700 6569600 7767600 5 5 4 5 5 5 5 5 5 5 5 5760800 9778700 39680 9886600 5623200 4677000 5011200 9576400 8811200 7497600 9311700 5364000 9125000 497450 10000000 5377800 5196000 5232700 9427100 8815400 7408200 8967100 4 4 2 4 4 4 4 4 4 4 4 499920000 270530000 229380000 5940 104 5536 31689;31690;31691;31692;31693 37822;37823;37824;37825;37826;37827;37828 37826 7 FSGWYDADLSPAGHEEAK Unmodified 1978.8697 0.86972069 722 P18669 PGAM1 Phosphoglycerate mutase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5 1 2 2 2 2 59.7 59.722 3 2.3956E-08 18336 20211116_3431_TMUAki_TMT10x_P_F4 111.33 102.93 23378000 40227000 99181 46280000 32343000 36571000 27149000 19929000 18657000 20863000 29371000 21767000 37559000 2023100 46640000 30879000 37481000 27547000 21130000 19732000 20337000 28001000 6 6 3 6 6 6 6 6 6 6 6 15219000 22501000 58611 28038000 23247000 29656000 19077000 13500000 12200000 13034000 18174000 14170000 21016000 1295700 28236000 22180000 29748000 19356000 14527000 12924000 12749000 17347000 4 4 1 4 4 4 4 4 4 4 4 8159200 17726000 40570 18242000 9096300 6914700 8071100 6429600 6457400 7828600 11196000 7597300 16543000 727390 18404000 8698600 7732100 8190500 6603500 6808000 7588200 10654000 2 2 2 2 2 2 2 2 2 2 2 2210100000 1508200000 701850000 5941 722 5537 31694;31695;31696;31697 37829;37830;37831;37832;37833;37834 37829 6 FSGWYDADLSPAGHEEAKR Unmodified 2134.9708 0.97083172 722 P18669 PGAM1 Phosphoglycerate mutase 1 yes yes 0 0 0 1 By MS/MS By MS/MS 6 0.894 2 1 2 3 2 51.753 52.085 4 2.3225E-06 15431 20211116_3433_TMUAki_TMT10x_P_F5 93.684 82.07 22296000 35505000 265560 39212000 36818000 43458000 25772000 23404000 20424000 21740000 27081000 20761000 33144000 2265500 39805000 35039000 43559000 26554000 24758000 21248000 21301000 25918000 5 5 3 5 5 5 5 5 5 5 5 18425000 29386000 265560 31840000 33228000 40487000 22599000 19832000 17271000 18175000 22285000 17157000 27430000 1977400 32438000 31610000 40248000 23314000 21156000 17981000 17818000 21342000 4 4 3 4 4 4 4 4 4 4 4 3870500 6118900 0 7372000 3590000 2970800 3173200 3571900 3152800 3565100 4796000 3603600 5714300 288130 7366300 3429900 3311400 3239900 3601100 3266600 3482200 4575600 1 1 0 1 1 1 1 1 1 1 1 2820400000 1823300000 997120000 5942 722 5538 31698;31699;31700;31701;31702 37835;37836;37837;37838;37839 37835 5 FSGYREDNIPQLEDVSR Unmodified 2023.9599 0.95993268 529 P07101;P07101-3;P07101-4;P07101-2 TH Tyrosine 3-monooxygenase yes no 0 0 0 1 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 53.61 53.747 3 4.9437E-30 16393 20211116_3442_TMUAki_TMT10x_S_F4 197.1 178.27 6114400 10406000 43093 11218000 9408100 12771000 8208900 10217000 9692800 9025200 9336200 5693300 9712800 573730 11410000 8992100 12857000 8435300 10481000 9783200 8863500 9017300 3 3 2 3 3 3 3 3 3 3 3 4303100 7153100 43093 7932300 7556800 10929000 6802600 7321900 6769400 6182000 6485600 4007000 6677500 442490 8082000 7229500 10868000 6938600 7592300 6878100 6084600 6265200 2 2 2 2 2 2 2 2 2 2 2 1811300 3252800 0 3286100 1851300 1842300 1406300 2894900 2923400 2843200 2850600 1686300 3035300 131230 3328400 1762600 1989500 1496700 2888700 2905000 2778900 2752100 1 1 0 1 1 1 1 1 1 1 1 1616900000 1269300000 347590000 5943 529 5539 31703;31704;31705 37840;37841;37842 37842 3 FSHEEIAMATVTALR Oxidation (M) 1690.8349 0.83485551 482 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 1 0 By MS/MS By MS/MS 6.47 1.2 1 2 5 3 4 9 6 50.815 51.015 2;3 5.7923E-11 14112 20211116_3445_TMUAki_TMT10x_S_F6 140.27 120.7 31207000 52471000 609250 53539000 38878000 47730000 33749000 42066000 41048000 38120000 43807000 29061000 48965000 2877800 54456000 37185000 48855000 34727000 42938000 41538000 37393000 42173000 12 12 9 12 12 12 12 12 12 12 12 14660000 24230000 109110 23223000 22691000 31265000 18515000 19450000 18848000 16909000 20562000 13651000 22605000 1044900 23882000 21657000 31090000 19010000 20296000 19221000 16619000 19782000 5 5 2 5 5 5 5 5 5 5 5 16547000 28242000 500140 30316000 16187000 16465000 15233000 22616000 22200000 21211000 23245000 15411000 26360000 1832900 30574000 15527000 17766000 15717000 22642000 22317000 20774000 22391000 7 7 7 7 7 7 7 7 7 7 7 16702000000 8819600000 7882000000 5944 482 5540 31706;31707;31708;31709;31710;31711;31712;31713;31714;31715;31716;31717;31718;31719;31720 37843;37844;37845;37846;37847;37848;37849;37850;37851;37852;37853;37854;37855;37856;37857 37852 374 15 FSHEEIAMATVTALR Unmodified 1674.8399 0.83994089 482 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 By MS/MS By MS/MS 6.75 0.968 1 2 3 2 4 4 58.792 59.11 2;3 5.1314E-30 18953 20211116_3435_TMUAki_TMT10x_P_F7 204.18 178.2 30643000 51853000 418230 48918000 37793000 50596000 39079000 36969000 36644000 36543000 38373000 28534000 48373000 2356500 50137000 36290000 51134000 39497000 38263000 37447000 35707000 36963000 6 6 4 6 6 6 6 6 6 6 6 19133000 30569000 359750 30177000 23868000 39015000 25381000 23603000 24305000 22352000 24308000 17817000 28523000 1915800 30946000 22941000 38854000 25632000 24739000 24773000 21882000 23449000 4 4 3 4 4 4 4 4 4 4 4 11510000 21283000 58483 18741000 13925000 11581000 13699000 13366000 12339000 14191000 14065000 10717000 19850000 440700 19191000 13350000 12280000 13865000 13524000 12674000 13825000 13514000 2 2 1 2 2 2 2 2 2 2 2 10807000000 5267000000 5540100000 5945 482 5540 31721;31722;31723;31724;31725;31726;31727;31728 37858;37859;37860;37861;37862;37863;37864 37859 7 FSHEEIAMATVTALRR Oxidation (M) 1846.936 0.93596654 482 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 1 1 By MS/MS By MS/MS 4.92 3.12 6 5 1 3 10 13 12 54.449 54.417 3;4 2.7039E-15 14836 20211116_3439_TMUAki_TMT10x_S_F1 152.07 137.98 32111000 55514000 494540 55959000 44380000 59045000 35832000 53212000 51419000 45545000 50152000 29901000 51802000 3065800 57103000 42354000 59830000 37276000 54167000 51583000 44798000 48419000 28 28 15 28 28 28 28 28 28 28 28 17160000 28856000 172890 29142000 29328000 44743000 23170000 30059000 28438000 24449000 27037000 15978000 26927000 1602400 29943000 27967000 44289000 23987000 31135000 28650000 24110000 26125000 13 13 6 13 13 13 13 13 13 13 13 14951000 26658000 321650 26817000 15052000 14302000 12662000 23152000 22981000 21096000 23115000 13923000 24875000 1463300 27159000 14387000 15541000 13288000 23032000 22932000 20688000 22294000 15 15 9 15 15 15 15 15 15 15 15 38831000000 28046000000 10785000000 5946 482 5541 31729;31730;31731;31732;31733;31734;31735;31736;31737;31738;31739;31740;31741;31742;31743;31744;31745;31746;31747;31748;31749;31750;31751;31752;31753 37865;37866;37867;37868;37869;37870;37871;37872;37873;37874;37875;37876;37877;37878;37879;37880;37881;37882;37883;37884;37885;37886;37887;37888;37889;37890;37891;37892;37893 37879 374 29 FSHEEIAMATVTALRR Unmodified 1830.9411 0.94105192 482 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 1 By MS/MS By MS/MS 4.57 3.04 3 4 3 4 7 7 52.725 52.706 3;4 1.0455E-53 15045 20211116_3428_TMUAki_TMT10x_P_F1 275.83 242.15 56543000 93418000 579940 100000000 76624000 77211000 68017000 46714000 39804000 45598000 68205000 52651000 87194000 5169900 101210000 73285000 79378000 68570000 49001000 42736000 44580000 64916000 21 21 12 21 21 21 21 21 21 21 21 34433000 56360000 226150 60673000 53817000 59618000 46884000 26754000 22200000 26649000 41446000 32062000 52606000 3044500 61576000 51440000 60062000 47155000 28857000 24348000 26031000 39386000 10 10 5 10 10 10 10 10 10 10 10 22110000 37058000 353780 39330000 22807000 17592000 21133000 19959000 17604000 18949000 26759000 20589000 34588000 2125500 39638000 21845000 19316000 21415000 20144000 18388000 18548000 25530000 11 11 7 11 11 11 11 11 11 11 11 28743000000 16918000000 11825000000 5947 482 5541 31754;31755;31756;31757;31758;31759;31760;31761;31762;31763;31764;31765;31766;31767 37894;37895;37896;37897;37898;37899;37900;37901;37902;37903;37904;37905;37906;37907;37908;37909;37910;37911;37912;37913;37914;37915 37894 22 FSHQGVQLIDFSPCER Unmodified 1918.8996 0.89958103 1249 P55884;P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 0 0 0 0 By MS/MS By MS/MS 6.29 1.03 2 2 2 1 3 4 56.931 57.173 3 4.0416E-43 16365 20211116_3434_TMUAki_TMT10x_P_F6 230.96 213.47 31153000 51521000 341950 52364000 39422000 49972000 33895000 40314000 37456000 35398000 40969000 29008000 48077000 2948600 53325000 37677000 50839000 34780000 41329000 38074000 34774000 39413000 11 11 8 11 11 11 11 11 11 11 11 16974000 26655000 147340 26694000 23291000 35480000 19923000 21068000 19887000 18498000 21112000 15805000 24872000 1631600 27361000 22257000 35279000 20384000 22071000 20276000 18172000 20328000 6 6 5 6 6 6 6 6 6 6 6 14179000 24866000 194610 25670000 16130000 14492000 13972000 19246000 17570000 16900000 19857000 13203000 23206000 1317000 25963000 15420000 15560000 14396000 19258000 17798000 16602000 19085000 5 5 3 5 5 5 5 5 5 5 5 13192000000 6797300000 6395000000 5948 1249 5542 31768;31769;31770;31771;31772;31773;31774 37916;37917;37918;37919;37920;37921;37922;37923;37924;37925;37926 37919 11 FSIQTMCPIEGEGNIAR Unmodified 1921.9026 0.9026175 1603 Q13155;Q13155-2 AIMP2 Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 yes no 0 0 0 0 By MS/MS 5 0 1 1 65.132 65.258 3 0.003675 20881 20211116_3433_TMUAki_TMT10x_P_F5 61.648 49.022 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5949 1603 5543 31775 37927 37927 1 FSLIDLAGNER Unmodified 1233.6354 0.63535107 62 O00139;O00139-2;O00139-1;O00139-5;O00139-4 KIF2A Kinesin-like protein KIF2A yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 70.265 70.253 2 1.7355E-06 21742 20211116_3434_TMUAki_TMT10x_P_F6 131.46 108.44 32105000 54870000 139540 46370000 39169000 51606000 38053000 36635000 32958000 36456000 40842000 29893000 51168000 2731100 47984000 37527000 51913000 38500000 37998000 34032000 35612000 39155000 4 4 1 4 4 4 4 4 4 4 4 17602000 28286000 139540 24146000 17077000 34232000 21348000 19714000 17735000 20298000 21343000 16390000 26378000 1527500 25076000 16487000 33925000 21319000 20794000 18328000 19800000 20477000 2 2 1 2 2 2 2 2 2 2 2 14503000 26584000 0 22225000 22092000 17374000 16705000 16921000 15224000 16158000 19498000 13503000 24790000 1203600 22908000 21041000 17989000 17180000 17204000 15704000 15812000 18677000 2 2 0 2 2 2 2 2 2 2 2 2759300000 1358900000 1400500000 5950 62 5544 31776;31777;31778;31779 37928;37929;37930;37931 37929 4 FSLVDLAGNER Unmodified 1219.6197 0.619701 2596 Q99661;Q99661-2;Q8N4N8 KIF2C;KIF2B Kinesin-like protein KIF2C;Kinesin-like protein KIF2B yes no 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 2 2 65.782 65.821 2 0.00013433 20875 20211116_3431_TMUAki_TMT10x_P_F4 93.477 71.329 20015000 33858000 149920 34854000 24200000 32242000 22332000 23846000 23474000 25405000 24116000 18637000 31597000 1857700 35448000 23166000 32819000 22786000 24715000 23854000 24748000 23244000 2 2 2 2 2 2 2 2 2 2 2 11362000 18607000 141080 18211000 14760000 23717000 13982000 12489000 13074000 14348000 13173000 10580000 17361000 1121000 18689000 14142000 23569000 14195000 13320000 13344000 13936000 12704000 1 1 1 1 1 1 1 1 1 1 1 8652800 15251000 8838.6 16643000 9440100 8525300 8350400 11357000 10400000 11057000 10943000 8056600 14236000 736640 16759000 9024700 9249400 8590600 11395000 10510000 10811000 10540000 1 1 1 1 1 1 1 1 1 1 1 1598800000 638000000 960840000 5951 2596 5545 31780;31781;31782;31783 37932;37933;37934 37932 3 FSMPGFKGEGPDVDVNLPK Oxidation (M) 2048.9877 0.98772734 1555 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 1 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 60.808 61.121 4 0.00012363 20354 20211116_3446_TMUAki_TMT10x_S_F7 73.809 62.041 12170000 21376000 68065 17602000 15100000 21408000 13376000 23112000 22515000 20031000 18976000 11332000 19932000 1058400 18281000 14436000 21613000 13941000 23321000 22380000 19690000 18415000 3 3 2 3 3 3 3 3 3 3 3 4835900 7944000 0 6435800 6021900 11973000 5706200 7587700 7630800 6752500 6346500 4502300 7407000 362470 6754900 5762500 11758000 5864100 7911000 7633200 6629200 6162000 1 1 0 1 1 1 1 1 1 1 1 7334200 13432000 68065 11167000 9078200 9434600 7669900 15524000 14884000 13279000 12629000 6829300 12525000 695910 11526000 8673300 9855000 8076900 15410000 14746000 13061000 12253000 2 2 2 2 2 2 2 2 2 2 2 2517500000 1611300000 906270000 5952 1555 5546 31784;31785;31786;31787 37935;37936;37937 37937 2096 3 FSMVLPEVEAALAEIPGVR Oxidation (M) 2043.0711 0.071063038 2424 Q96CN7 ISOC1 Isochorismatase domain-containing protein 1 yes yes 0 0 1 0 By MS/MS 4 0 1 1 82.338 82.346 3 0.025061 27684 20211116_3431_TMUAki_TMT10x_P_F4 40.645 28.853 574990 894070 71.709 911520 521130 934090 590980 484580 472570 610610 667060 535370 834330 46983 929000 501440 940100 592140 519150 492840 591160 637470 1 1 1 1 1 1 1 1 1 1 1 574990 894070 71.709 911520 521130 934090 590980 484580 472570 610610 667060 535370 834330 46983 929000 501440 940100 592140 519150 492840 591160 637470 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 89901000 89901000 0 5953 2424 5547 31788 37938 37938 2747 1 FSMVVQDGIVK Unmodified 1221.6427 0.64274463 860 P30044;P30044-2;P30044-3;P30044-4 PRDX5 Peroxiredoxin-5, mitochondrial yes no 0 0 0 0 By MS/MS 7 0 1 1 65.03 65.639 2 4.2092E-14 21708 20211116_3435_TMUAki_TMT10x_P_F7 153.12 125.11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5954 860 5548 31789 37939 37939 1 FSMVVQDGIVK Oxidation (M) 1237.6377 0.63765925 860 P30044;P30044-2;P30044-3;P30044-4 PRDX5 Peroxiredoxin-5, mitochondrial yes no 0 0 1 0 By MS/MS 6 0 1 1 58.125 58.163 2 0.0072372 17177 20211116_3445_TMUAki_TMT10x_S_F6 70.389 50.225 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5955 860 5548 31790 37940 37940 1028 1 FSNISAAK Unmodified 836.43922 0.43921744 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 41.799 42.127 2 0.0016603 10847 20211116_3436_TMUAki_TMT10x_P_F8 119.07 89.495 3467100 6076800 0 5610200 6993000 6765800 4689200 3446800 3780800 3313800 4533300 3228100 5668500 321570 5773500 6646300 6746700 4848800 3668000 3912800 3242000 4349800 2 2 0 2 2 2 2 2 2 2 2 3467100 6076800 0 5610200 6993000 6765800 4689200 3446800 3780800 3313800 4533300 3228100 5668500 321570 5773500 6646300 6746700 4848800 3668000 3912800 3242000 4349800 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 163180000 163180000 0 5956 1147 5549 31791;31792;31793;31794 37941;37942;37943 37941 3 FSPAGPILSIR Unmodified 1156.6604 0.66044361 634 P11940;P11940-2;Q9H361;Q4VXU2;Q4VXU2-2 PABPC1;PABPC3;PABPC1L Polyadenylate-binding protein 1;Polyadenylate-binding protein 3;Polyadenylate-binding protein 1-like no no 0 0 0 0 By MS/MS By MS/MS 2.8 0.748 2 2 1 2 3 63.979 63.605 2 9.0421E-18 21640 20211116_3430_TMUAki_TMT10x_P_F3 198.61 164.52 19871000 38165000 577630 34160000 22718000 26849000 20497000 32354000 30154000 26731000 30015000 18506000 35597000 2223500 35022000 21762000 27927000 21206000 32450000 30249000 26338000 28959000 4 4 3 4 4 4 4 4 4 4 4 3924200 7286800 202380 6813200 6107800 11223000 5959400 7392900 6685500 5819600 5926900 3655300 6797600 544530 7050000 5865000 11075000 6075100 7662800 6742700 5748600 5741000 1 1 1 1 1 1 1 1 1 1 1 15947000 30878000 375260 27347000 16610000 15626000 14538000 24962000 23468000 20911000 24088000 14851000 28799000 1679000 27972000 15897000 16852000 15131000 24787000 23506000 20590000 23218000 3 3 2 3 3 3 3 3 3 3 3 1416000000 547020000 868970000 5957 634 5550 31795;31796;31797;31798;31799 37944;37945;37946;37947;37948;37949;37950 37945 7 FSPAGPVLSIR Unmodified 1142.6448 0.64479354 1619 Q13310;Q13310-2;Q13310-3 PABPC4 Polyadenylate-binding protein 4 yes no 0 0 0 0 By MS/MS 3 0 1 1 59.44 59.183 2 0.00059347 19826 20211116_3430_TMUAki_TMT10x_P_F3 85.733 48.357 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5958 1619 5551 31800 37951 37951 1 FSPDGELYASGSEDGTLR Unmodified 1899.8487 0.8486509 3284 Q9Y3F4;Q9Y3F4-2 STRAP Serine-threonine kinase receptor-associated protein yes no 0 0 0 0 By MS/MS By MS/MS 2.4 1.08 4 4 4 3 7 8 57.726 57.538 2;3 6.806E-117 17374 20211116_3440_TMUAki_TMT10x_S_F2 358.82 332.88 44099000 77654000 116950 79310000 54293000 70159000 48486000 53276000 51847000 50153000 58418000 41059000 72466000 3544000 80655000 51896000 71658000 49589000 54925000 52832000 49111000 56150000 20 20 7 20 20 20 20 20 20 20 20 24544000 41784000 47096 42818000 34720000 52376000 32106000 28342000 28048000 27156000 31257000 22852000 38992000 1992500 43751000 33213000 52227000 32577000 29994000 28826000 26571000 30053000 10 10 3 10 10 10 10 10 10 10 10 19555000 35871000 69851 36492000 19573000 17783000 16381000 24933000 23799000 22997000 27161000 18207000 33473000 1551500 36904000 18683000 19431000 17012000 24932000 24006000 22540000 26097000 10 10 4 10 10 10 10 10 10 10 10 13097000000 7327800000 5769200000 5959 3284 5552 31801;31802;31803;31804;31805;31806;31807;31808;31809;31810;31811;31812;31813;31814;31815 37952;37953;37954;37955;37956;37957;37958;37959;37960;37961;37962;37963;37964;37965;37966;37967;37968;37969;37970;37971 37967 20 FSPFPVQDRPESSLVFK Unmodified 1979.0153 0.015262719 3216 Q9UQ35;Q9UQ35-2 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 3 2.92 2 1 1 2 2 69.136 69.107 3 6.1129E-16 23843 20211116_3439_TMUAki_TMT10x_S_F1 157.11 137.54 27832000 39131000 460370 48211000 21934000 29149000 23623000 13670000 14628000 16275000 24658000 25917000 36547000 2580000 48257000 21097000 30523000 23595000 14758000 15631000 15787000 23476000 4 4 3 4 4 4 4 4 4 4 4 21715000 30234000 460370 36937000 16433000 24849000 17672000 10536000 11408000 12727000 19098000 20222000 28237000 2155400 37027000 15816000 25738000 17667000 11500000 12153000 12340000 18185000 3 3 3 3 3 3 3 3 3 3 3 6117100 8896900 0 11274000 5500700 4300800 5951300 3133700 3219400 3547500 5559900 5695100 8310600 424590 11229000 5280900 4785200 5928600 3257400 3477800 3447600 5291000 1 1 0 1 1 1 1 1 1 1 1 2674000000 1523700000 1150300000 5960 3216 5553 31816;31817;31818;31819 37972;37973;37974;37975;37976 37975 5 FSPIPFPPLSYK Unmodified 1391.7489 0.74892426 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 By MS/MS 5 0 1 1 79.228 79.239 2 5.0973E-05 25501 20211116_3444_TMUAki_TMT10x_S_F5 95.573 74.672 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5961 1997 5554 31820 37977 37977 1 FSPLTTNLINLLAENGR Unmodified 1872.0105 0.010511692 1068 P48047 ATP5O ATP synthase subunit O, mitochondrial yes yes 0 0 0 0 By MS/MS 4 0 1 1 80.848 80.856 3 1.4232E-07 27056 20211116_3431_TMUAki_TMT10x_P_F4 102.5 72.329 1538200 2519900 0 2403000 1595800 2834100 1749600 1211800 1362700 1590100 1883200 1431800 2350900 82452 2466200 1531100 2824100 1754700 1325300 1421700 1537400 1800500 1 1 0 1 1 1 1 1 1 1 1 1538200 2519900 0 2403000 1595800 2834100 1749600 1211800 1362700 1590100 1883200 1431800 2350900 82452 2466200 1531100 2824100 1754700 1325300 1421700 1537400 1800500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 454520000 454520000 0 5962 1068 5555 31821 37978 37978 1 FSPNSSNPIIVSCGWDK Unmodified 1906.8883 0.88834765 1405 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 6 2.92 2 2 4 5 3 68.805 68.892 2;3 5.8065E-43 21816 20211116_3436_TMUAki_TMT10x_P_F8 229.9 198.67 94131000 149160000 558950 168330000 86625000 103590000 104650000 47284000 40513000 57923000 96892000 87646000 139260000 7789900 169400000 83520000 108260000 103230000 51235000 46022000 56132000 91723000 13 13 6 13 13 13 13 13 13 13 13 46050000 70241000 484310 79691000 52989000 72353000 60022000 26699000 23462000 31199000 48132000 42880000 65577000 4302900 80521000 51010000 73135000 59383000 29584000 26344000 30286000 45668000 8 8 4 8 8 8 8 8 8 8 8 48081000 78923000 74634 88637000 33637000 31239000 44633000 20585000 17051000 26724000 48760000 44766000 73679000 3487100 88880000 32510000 35125000 43844000 21651000 19678000 25847000 46055000 5 5 2 5 5 5 5 5 5 5 5 12751000000 7534400000 5216800000 5963 1405 5556 31822;31823;31824;31825;31826;31827;31828;31829 37979;37980;37981;37982;37983;37984;37985;37986;37987;37988;37989;37990;37991 37986 13 FSPNTSQFLLVSSWDTSVR Unmodified 2170.0695 0.069483134 234 O43684;O43684-2 BUB3 Mitotic checkpoint protein BUB3 yes no 0 0 0 0 By MS/MS By MS/MS 2.75 0.433 1 3 3 1 79.05 78.988 2 2.6086E-10 27846 20211116_3430_TMUAki_TMT10x_P_F3 117.4 45.843 5284500 8536400 112020 8743200 6616400 4508600 7192500 1704600 1767900 2618600 5532800 4920900 7966100 513160 8841600 6362300 4791300 7097600 1902000 2169500 2519900 5220800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5284500 8536400 112020 8743200 6616400 4508600 7192500 1704600 1767900 2618600 5532800 4920900 7966100 513160 8841600 6362300 4791300 7097600 1902000 2169500 2519900 5220800 2 2 1 2 2 2 2 2 2 2 2 3223100000 2385100000 837970000 5964 234 5557 31830;31831;31832;31833 37992;37993;37994 37992 3 FSPTDFLAK Unmodified 1024.5229 0.52294707 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 3.09 1 1 1 2 1 71.382 71.339 2 0.00013838 22864 20211116_3436_TMUAki_TMT10x_P_F8 138.1 83.689 25180000 38685000 553220 45174000 23795000 27741000 24545000 19408000 19458000 21766000 28016000 23449000 36122000 2546800 45366000 22865000 29149000 24701000 20224000 20322000 21161000 26761000 3 3 2 3 3 3 3 3 3 3 3 21405000 32415000 553220 38739000 19875000 24125000 20348000 15804000 15848000 18191000 23523000 19934000 30270000 2268800 38855000 19103000 25291000 20476000 16560000 16592000 17668000 22454000 2 2 2 2 2 2 2 2 2 2 2 3775300 6270200 0 6435300 3919300 3616300 4197400 3603900 3610700 3575400 4493200 3514900 5851300 278080 6511300 3762600 3857700 4224900 3664000 3730200 3493100 4307100 1 1 0 1 1 1 1 1 1 1 1 1188400000 838430000 349930000 5965 1018 5558 31834;31835;31836 37995;37996;37997;37998 37997 4 FSPVTPK Unmodified 774.42759 0.42759012 1837 Q15942;Q15942-2 ZYX Zyxin yes no 0 0 0 0 By MS/MS 8 0 1 1 43.094 43.105 2 0.1031 10803 20211116_3447_TMUAki_TMT10x_S_F8 58.286 31.807 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5966 1837 5559 31837 37999 37999 1 FSQELLSNGELNHLPLK Unmodified 1938.0211 0.021076378 705 P17480;P17480-2 UBTF Nucleolar transcription factor 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 68.95 69.201 3 1.4209E-16 23734 20211116_3446_TMUAki_TMT10x_S_F7 159.34 137.81 12970000 23972000 221300 21776000 14579000 25148000 15637000 16034000 17000000 16960000 18132000 12078000 22361000 1268800 22421000 14016000 25206000 15849000 16790000 17275000 16526000 17456000 4 4 2 4 4 4 4 4 4 4 4 9070100 16633000 216540 14821000 10066000 20505000 11242000 11561000 12200000 11853000 12782000 8446500 15514000 932420 15333000 9692500 20337000 11371000 12214000 12391000 11565000 12313000 3 3 1 3 3 3 3 3 3 3 3 3900200 7339300 4766 6955700 4512200 4642900 4395600 4473100 4799300 5106600 5349900 3631500 6846900 336360 7088500 4323900 4868700 4477200 4575500 4884400 4961300 5143800 1 1 1 1 1 1 1 1 1 1 1 2919100000 1905400000 1013600000 5967 705 5560 31838;31839;31840 38000;38001;38002;38003 38003 4 FSQEVQITEAR Unmodified 1306.6517 0.65172941 887 P31350;P31350-2 RRM2 Ribonucleoside-diphosphate reductase subunit M2 yes no 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 2 3 45.389 45.375 2 1.197E-23 12549 20211116_3431_TMUAki_TMT10x_P_F4 252.14 212.89 7108100 11636000 35169 13544000 8273100 6516200 5998300 6010900 5460400 5031300 8081900 6618300 10865000 600710 13578000 7875100 7060400 6186600 6107700 5671600 4954200 7715200 4 4 2 4 4 4 4 4 4 4 4 2151100 3451200 34142 4349400 3387200 3544100 2304300 1926700 1743500 1569900 2509200 2003200 3223700 227470 4361600 3222600 3623800 2376600 2029900 1825500 1547900 2396800 1 1 1 1 1 1 1 1 1 1 1 4957000 8184600 1026.7 9195000 4885900 2972100 3694000 4084200 3716800 3461400 5572800 4615200 7640900 373240 9216000 4652500 3436600 3810000 4077800 3846100 3406300 5318400 3 3 1 3 3 3 3 3 3 3 3 909400000 243980000 665420000 5968 887 5561 31841;31842;31843;31844;31845 38004;38005;38006;38007;38008 38005 5 FSQLAEAYEVLSDEVK Unmodified 1826.8938 0.89381018 2450 Q96EY1;Q96EY1-2 DNAJA3 DnaJ homolog subfamily A member 3, mitochondrial yes no 0 0 0 0 By MS/MS 4 0 1 1 80.387 80.367 3 0.087727 27367 20211116_3442_TMUAki_TMT10x_S_F4 27.333 2.0299 1682600 2758000 22654 2495000 2025100 2060800 2197700 1415700 1324200 1715600 1940500 1566800 2572600 165410 2557400 1947500 2111700 2193200 1480900 1407200 1663200 1852900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1682600 2758000 22654 2495000 2025100 2060800 2197700 1415700 1324200 1715600 1940500 1566800 2572600 165410 2557400 1947500 2111700 2193200 1480900 1407200 1663200 1852900 1 1 1 1 1 1 1 1 1 1 1 967090000 0 967090000 5969 2450 5562 31846 38009 38009 1 FSQYFYEAPIFTIPGR Unmodified 1934.9567 0.95668521 1715 Q14562 DHX8 ATP-dependent RNA helicase DHX8 yes yes 0 0 0 0 By MS/MS 3 0 1 1 80.038 79.987 3 3.124E-05 29246 20211116_3441_TMUAki_TMT10x_S_F3 86.455 66.616 1574800 2640900 15875 2675800 2065300 1699100 2158300 1322400 1588600 1354400 1880900 1466400 2464300 152220 2712700 1983600 1782700 2166800 1364500 1651400 1321400 1805400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1574800 2640900 15875 2675800 2065300 1699100 2158300 1322400 1588600 1354400 1880900 1466400 2464300 152220 2712700 1983600 1782700 2166800 1364500 1651400 1321400 1805400 1 1 1 1 1 1 1 1 1 1 1 778590000 0 778590000 5970 1715 5563 31847 38010 38010 1 FSREEFPTLQAAGDQDK Unmodified 1937.9119 0.91191986 1077 P48634;P48634-2;P48634-3;P48634-4 PRRC2A Protein PRRC2A yes no 0 0 0 1 By MS/MS 4 0 1 1 52.675 52.841 3 0.10744 15593 20211116_3431_TMUAki_TMT10x_P_F4 29.971 17.256 7883800 12003000 183240 12687000 11362000 13843000 8342300 7194400 6866700 7818100 9321100 7342000 11202000 873110 12912000 10830000 13882000 8574200 7669000 7137300 7609900 8915700 1 1 1 1 1 1 1 1 1 1 1 7883800 12003000 183240 12687000 11362000 13843000 8342300 7194400 6866700 7818100 9321100 7342000 11202000 873110 12912000 10830000 13882000 8574200 7669000 7137300 7609900 8915700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 191070000 191070000 0 5971 1077 5564 31848 38011 38011 1 FSRFPEALR Unmodified 1121.5982 0.5981777 1609 Q13200;Q13200-3;Q13200-2 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 43.709 43.718 3 0.00046894 11449 20211116_3428_TMUAki_TMT10x_P_F1 109.15 82.632 1243800 1963200 4491.2 2199000 2153300 2115200 1326100 1895500 1593800 1397400 1856300 1158100 1832700 117230 2225400 2044000 2155100 1396600 1923400 1619000 1385300 1782600 2 2 1 2 2 2 2 2 2 2 2 677830 1045500 0 1161700 1621000 1757300 990870 1058900 880440 777750 1006100 631100 975960 66593 1185800 1538300 1737800 1034600 1103500 904990 771170 966680 1 1 0 1 1 1 1 1 1 1 1 565950 917690 4491.2 1037300 532270 357970 335210 836630 713390 619690 850160 526980 856750 50635 1039600 505680 417340 362030 819970 714050 614160 815890 1 1 1 1 1 1 1 1 1 1 1 122090000 61487000 60606000 5972 1609 5565 31849;31850 38012;38013 38012 2 FSSYYLSLPPEMR Oxidation (M) 1604.7545 0.75447993 554 P08243;P08243-2;P08243-3 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes no 0 0 1 0 By MS/MS 8 0 1 1 65.899 66.056 2 0.034044 20644 20211116_3436_TMUAki_TMT10x_P_F8 62.823 48.132 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5973 554 5566 31851 38014 38014 514 1 FSTFFDDAPVFR Unmodified 1447.6772 0.67721588 257 O60231 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.707 1 2 1 1 3 78.98 78.995 2 9.9114E-13 27856 20211116_3446_TMUAki_TMT10x_S_F7 178.84 157.34 16514000 27993000 270110 25794000 19823000 22041000 20464000 15726000 14671000 15636000 19952000 15378000 26113000 1614700 26413000 19037000 22543000 20544000 16305000 15366000 15274000 19084000 4 4 3 4 4 4 4 4 4 4 4 3651800 5955800 93399 5820500 3664600 7205500 4442600 3951000 3721300 3907800 4809300 3400900 5556900 389980 5968100 3539000 7181900 4443400 4180000 3855900 3818300 4605700 1 1 1 1 1 1 1 1 1 1 1 12863000 22038000 176720 19973000 16159000 14835000 16021000 11775000 10949000 11728000 15143000 11977000 20556000 1224700 20445000 15498000 15361000 16101000 12125000 11510000 11456000 14478000 3 3 2 3 3 3 3 3 3 3 3 3042000000 877570000 2164400000 5974 257 5567 31852;31853;31854;31855 38015;38016;38017;38018 38016 4 FSTPEQAAK Unmodified 977.48181 0.48181054 677 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 4 2 2 4 34.788 34.885 2 1.3963E-05 9595 20211116_3431_TMUAki_TMT10x_P_F4 152.34 118.26 2799600 4880400 11707 4353700 3268800 2583000 3824000 2663400 3083800 2765000 3949500 2606800 4552000 248740 4452200 3148900 2742500 3826900 2706900 3200400 2696200 3783100 5 5 3 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2799600 4880400 11707 4353700 3268800 2583000 3824000 2663400 3083800 2765000 3949500 2606800 4552000 248740 4452200 3148900 2742500 3826900 2706900 3200400 2696200 3783100 5 5 3 5 5 5 5 5 5 5 5 80241000 0 80241000 5975 677 5568 31856;31857;31858;31859;31860;31861 38019;38020;38021;38022;38023;38024;38025 38019 7 FSVCVLGDQQHCDEAK Unmodified 1891.8193 0.8192818 1381 P62906 RPL10A 60S ribosomal protein L10a yes yes 0 0 0 0 By MS/MS By MS/MS 4.41 1.33 1 4 4 4 3 1 9 8 50.036 50.099 3;4 1.9654E-47 14815 20211116_3442_TMUAki_TMT10x_S_F4 252.82 235.12 130590000 206730000 2347900 237340000 213940000 217010000 140620000 179460000 170000000 154510000 182310000 121610000 193020000 13719000 239660000 203410000 221490000 147380000 183610000 172100000 151930000 175480000 22 22 15 22 22 22 22 22 22 22 22 73353000 110880000 1183700 130390000 161480000 167450000 94088000 98995000 89547000 82122000 96806000 68306000 103540000 8214200 132190000 153200000 166770000 98820000 103600000 91555000 80900000 93161000 12 12 9 12 12 12 12 12 12 12 12 57236000 95848000 1164200 106950000 52462000 49556000 46529000 80464000 80456000 72387000 85500000 53299000 89478000 5504800 107470000 50207000 54719000 48557000 80009000 80544000 71029000 82322000 10 10 6 10 10 10 10 10 10 10 10 28040000000 15758000000 12282000000 5976 1381 5569 31862;31863;31864;31865;31866;31867;31868;31869;31870;31871;31872;31873;31874;31875;31876;31877;31878 38026;38027;38028;38029;38030;38031;38032;38033;38034;38035;38036;38037;38038;38039;38040;38041;38042;38043;38044;38045;38046;38047;38048;38049 38041 24 FSVSPVVR Unmodified 889.50215 0.50215205 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.64 2.71 2 2 1 2 2 2 5 6 45.474 45.505 2 0.00041459 14002 20211116_3446_TMUAki_TMT10x_S_F7 142.64 109.29 53318000 84081000 343730 87645000 77397000 75353000 49387000 54097000 53875000 48889000 66086000 49645000 78470000 4865700 88977000 73515000 77045000 51699000 55919000 55046000 47962000 63373000 11 11 8 11 11 11 11 11 11 11 11 29135000 45441000 154710 46749000 54712000 56294000 28654000 29051000 28508000 25936000 35400000 27128000 42406000 2761900 47742000 51804000 56147000 30423000 30819000 29253000 25459000 33936000 5 5 3 5 5 5 5 5 5 5 5 24183000 38640000 189020 40897000 22686000 19059000 20733000 25046000 25367000 22953000 30686000 22518000 36063000 2103700 41235000 21711000 20898000 21276000 25100000 25793000 22504000 29437000 6 6 5 6 6 6 6 6 6 6 6 12301000000 7797200000 4503400000 5977 653 5570 31879;31880;31881;31882;31883;31884;31885;31886;31887;31888;31889 38050;38051;38052;38053;38054;38055;38056;38057;38058;38059;38060;38061 38059 12 FSVYVTESQPDLSGKK Unmodified 1783.8992 0.89922991 1696 Q14232 EIF2B1 Translation initiation factor eIF-2B subunit alpha yes yes 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 57.034 57.381 3 8.0411E-43 16601 20211116_3447_TMUAki_TMT10x_S_F8 228.73 198.2 39173000 64795000 285220 65327000 56984000 68528000 48213000 57879000 52446000 52833000 55429000 36473000 60462000 3447200 66655000 54415000 69375000 49495000 59234000 53275000 51807000 53378000 9 9 4 9 9 9 9 9 9 9 9 21104000 34152000 126950 34447000 33468000 49038000 28851000 30509000 28037000 28430000 29206000 19649000 31868000 1805300 35339000 31967000 48640000 29481000 31892000 28600000 27852000 28138000 5 5 2 5 5 5 5 5 5 5 5 18068000 30643000 158260 30880000 23516000 19490000 19363000 27371000 24409000 24403000 26223000 16824000 28594000 1641900 31316000 22449000 20735000 20014000 27342000 24675000 23955000 25240000 4 4 2 4 4 4 4 4 4 4 4 4597900000 2475300000 2122600000 5978 1696 5571 31890;31891;31892;31893 38062;38063;38064;38065;38066;38067;38068;38069;38070 38069 9 FSWAQGTDTILADEMGLGK Unmodified 2038.967 0.9669919 1735;1571 Q14839;Q14839-2;Q8TDI0;Q12873;Q12873-3;Q12873-2 CHD4;CHD5;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3 no no 0 0 0 0 By matching By MS/MS 6.33 0.471 2 1 1 2 79.932 79.938 3 0.0078443 26090 20211116_3445_TMUAki_TMT10x_S_F6 48.919 38.754 4204400 6817300 183790 6569400 4220300 4269500 4591200 2035700 2095800 2165200 3918000 3916100 6360300 520080 6685000 4067100 4441100 4560400 2186400 2306000 2109300 3723200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4204400 6817300 183790 6569400 4220300 4269500 4591200 2035700 2095800 2165200 3918000 3916100 6360300 520080 6685000 4067100 4441100 4560400 2186400 2306000 2109300 3723200 1 1 1 1 1 1 1 1 1 1 1 1143900000 438450000 705410000 5979 1735;1571 5572 31894;31895;31896 38071 38071 1 FSYLAVIEGAK Unmodified 1196.6441 0.64412484 713 P18031 PTPN1 Tyrosine-protein phosphatase non-receptor type 1 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 3 2 1 77.418 77.396 2;3 2.173E-14 25341 20211116_3436_TMUAki_TMT10x_P_F8 187.97 121.9 15054000 25038000 186720 21913000 17662000 25144000 18111000 17243000 15060000 16603000 19233000 14018000 23351000 1458600 22624000 16958000 25238000 18253000 17911000 15603000 16242000 18424000 2 2 2 2 2 2 2 2 2 2 2 9314800 15667000 180640 13213000 9857400 17804000 10806000 10406000 9003000 9951000 11770000 8674300 14610000 948210 13721000 9486500 17688000 10856000 10939000 9336100 9737400 11269000 1 1 1 1 1 1 1 1 1 1 1 5739300 9370700 6077.8 8700000 7804900 7339400 7304900 6837600 6057100 6652400 7462600 5343900 8741400 510420 8902400 7471500 7549500 7397200 6971800 6266600 6504700 7155400 1 1 1 1 1 1 1 1 1 1 1 2294800000 1441400000 853330000 5980 713 5573 31897;31898;31899 38072;38073;38074 38072 3 FSYRENLEDEYEPR Unmodified 1845.817 0.81695684 1109 P49643;P49643-2 PRIM2 DNA primase large subunit yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 46.649 46.477 3 2.2246E-29 15654 20211116_3441_TMUAki_TMT10x_S_F3 199.69 169.2 11658000 19399000 94412 22098000 18840000 20834000 14329000 14259000 14247000 12451000 15805000 10855000 18111000 1060700 22334000 17951000 21155000 14768000 14775000 14553000 12235000 15198000 8 8 4 8 8 8 8 8 8 8 8 7894100 12894000 59878 14884000 15291000 17331000 11425000 8807400 8911900 7933300 10345000 7350000 12039000 728920 15080000 14563000 17313000 11713000 9358700 9227200 7784100 9935100 5 5 2 5 5 5 5 5 5 5 5 3764300 6504200 34534 7213300 3549200 3503300 2903800 5451400 5335500 4518100 5460000 3505100 6071700 331790 7253200 3388400 3841600 3054500 5416300 5326000 4451100 5263200 3 3 2 3 3 3 3 3 3 3 3 665140000 408230000 256910000 5981 1109 5574 31900;31901;31902;31903 38075;38076;38077;38078;38079;38080;38081;38082 38082 8 FTADEARDLIQR Unmodified 1433.7263 0.72629134 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 1 By MS/MS 4 0 1 1 51.256 51.422 3 0.032002 14961 20211116_3431_TMUAki_TMT10x_P_F4 54.871 32.673 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5982 1997 5575 31904 38083 38083 1 FTAGDFSTTVIQNVNK Unmodified 1740.8683 0.86826413 3321 Q9Y5K8 ATP6V1D V-type proton ATPase subunit D yes yes 0 0 0 0 By MS/MS 8 0 1 1 69.656 69.737 3 1.974E-09 22180 20211116_3436_TMUAki_TMT10x_P_F8 121.45 108.47 5555500 8181800 86324 9558400 6354700 10242000 6573800 5838600 4724900 5073000 6680000 5173400 7639600 552230 9664100 6103900 10293000 6599400 6135600 4957000 4986100 6383500 1 1 1 1 1 1 1 1 1 1 1 5555500 8181800 86324 9558400 6354700 10242000 6573800 5838600 4724900 5073000 6680000 5173400 7639600 552230 9664100 6103900 10293000 6599400 6135600 4957000 4986100 6383500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 467190000 467190000 0 5983 3321 5576 31905 38084 38084 1 FTARPLVETIFER Unmodified 1577.8566 0.85657723 62 O00139;O00139-2;O00139-1;O00139-5;O00139-4 KIF2A Kinesin-like protein KIF2A yes no 0 0 0 1 By MS/MS By MS/MS 4.29 3.24 2 2 3 2 5 66.254 66.064 3 3.6012E-19 20493 20211116_3428_TMUAki_TMT10x_P_F1 186.62 164.04 22782000 35817000 229770 34625000 24282000 31160000 24685000 20924000 19062000 20244000 26731000 21214000 33417000 2104000 35356000 23306000 31727000 24844000 21770000 19911000 19800000 25549000 5 5 4 5 5 5 5 5 5 5 5 12714000 18910000 87820 18510000 12312000 20928000 14093000 11174000 10491000 11021000 14593000 11838000 17644000 1110400 18947000 11854000 20952000 14091000 11848000 10976000 10770000 13950000 3 3 2 3 3 3 3 3 3 3 3 10068000 16907000 141950 16115000 11970000 10232000 10591000 9750300 8571600 9223500 12138000 9375400 15773000 993650 16408000 11452000 10776000 10753000 9922000 8935100 9029900 11599000 2 2 2 2 2 2 2 2 2 2 2 3572000000 1609900000 1962100000 5984 62 5577 31906;31907;31908;31909;31910;31911;31912 38085;38086;38087;38088;38089;38090;38091;38092 38085 8 FTARPLVQTIFEGGK Unmodified 1662.9093 0.90934108 2596 Q99661;Q99661-2 KIF2C Kinesin-like protein KIF2C yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 67.551 67.367 3 8.1921E-24 21930 20211116_3442_TMUAki_TMT10x_S_F4 185.99 153.36 51483000 90015000 844920 85131000 63601000 59722000 55839000 61282000 55290000 60305000 68676000 47942000 83975000 5225400 86813000 60840000 62443000 57028000 62199000 56747000 58937000 65835000 7 7 7 7 7 7 7 7 7 7 7 7889800 12931000 210710 13395000 9386200 17423000 10849000 9070900 8519100 8803000 10078000 7347700 12068000 871450 13693000 9049500 17313000 10856000 9636100 8824000 8608500 9673800 1 1 1 1 1 1 1 1 1 1 1 43593000 77084000 634210 71736000 54215000 42300000 44989000 52211000 46771000 51502000 58598000 40594000 71908000 4354000 73120000 51790000 45130000 46172000 52563000 47923000 50329000 56162000 6 6 6 6 6 6 6 6 6 6 6 3486900000 1711600000 1775300000 5985 2596 5578 31913;31914;31915;31916 38093;38094;38095;38096;38097;38098;38099;38100 38098 8 FTASAGIQVVGDDLTVTNPK Unmodified 2032.0477 0.047685059 520 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 0 By MS/MS By MS/MS 5.4 1.52 2 2 6 11 19 26 17 4 46 41 82.108 82.088 2;3;4 1.2906E-129 23275 20211116_3436_TMUAki_TMT10x_P_F8 342.97 283.55 263600000 443440000 3463900 392410000 341460000 400890000 336780000 297170000 298500000 297900000 349600000 245450000 413580000 23880000 404060000 327410000 405550000 340670000 307400000 307160000 290920000 335670000 106 106 59 106 106 106 106 106 106 106 106 129090000 213990000 1938100 188000000 128440000 240440000 163840000 142900000 143020000 145690000 170100000 120210000 199580000 10963000 194410000 124120000 239510000 163700000 150300000 147370000 142180000 163250000 50 50 25 50 50 50 50 50 50 50 50 134500000 229450000 1525900 204410000 213020000 160460000 172930000 154270000 155470000 152210000 179510000 125240000 214010000 12918000 209640000 203290000 166030000 176970000 157100000 159780000 148740000 172420000 56 56 34 56 56 56 56 56 56 56 56 85784000000 39847000000 45938000000 5986 520 5579 31917;31918;31919;31920;31921;31922;31923;31924;31925;31926;31927;31928;31929;31930;31931;31932;31933;31934;31935;31936;31937;31938;31939;31940;31941;31942;31943;31944;31945;31946;31947;31948;31949;31950;31951;31952;31953;31954;31955;31956;31957;31958;31959;31960;31961;31962;31963;31964;31965;31966;31967;31968;31969;31970;31971;31972;31973;31974;31975;31976;31977;31978;31979;31980;31981;31982;31983;31984;31985;31986;31987;31988;31989;31990;31991;31992;31993;31994;31995;31996;31997;31998;31999;32000;32001;32002;32003 38101;38102;38103;38104;38105;38106;38107;38108;38109;38110;38111;38112;38113;38114;38115;38116;38117;38118;38119;38120;38121;38122;38123;38124;38125;38126;38127;38128;38129;38130;38131;38132;38133;38134;38135;38136;38137;38138;38139;38140;38141;38142;38143;38144;38145;38146;38147;38148;38149;38150;38151;38152;38153;38154;38155;38156;38157;38158;38159;38160;38161;38162;38163;38164;38165;38166;38167;38168;38169;38170;38171;38172;38173;38174;38175;38176;38177;38178;38179;38180;38181;38182;38183;38184;38185;38186;38187;38188;38189;38190;38191;38192;38193;38194;38195;38196;38197;38198;38199;38200;38201;38202;38203;38204;38205;38206;38207;38208;38209;38210;38211;38212;38213;38214;38215;38216;38217;38218;38219;38220;38221;38222;38223;38224;38225;38226;38227;38228;38229;38230 38164 130 FTASAGIQVVGDDLTVTNPKR Unmodified 2188.1488 0.14879609 520 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 1 By MS/MS By MS/MS 4.72 2.47 4 4 4 4 2 3 5 6 16 16 64.455 64.47 2;3;4 9.0444E-113 19646 20211116_3436_TMUAki_TMT10x_P_F8 336.16 291.17 290810000 483650000 2310700 435340000 330810000 454710000 339320000 374920000 352870000 336230000 378110000 270780000 451110000 24771000 447820000 317420000 460240000 344160000 384060000 359290000 329970000 363970000 50 50 26 50 50 50 50 50 50 50 50 161590000 261690000 930770 233930000 163570000 310670000 189840000 206340000 198370000 182520000 204870000 150450000 244080000 12666000 241750000 157450000 309410000 191450000 214350000 201670000 179240000 197430000 25 25 11 25 25 25 25 25 25 25 25 129220000 221960000 1380000 201410000 167240000 144040000 149480000 168580000 154490000 153710000 173240000 120320000 207030000 12105000 206070000 159970000 150830000 152710000 169710000 157620000 150740000 166540000 25 25 15 25 25 25 25 25 25 25 25 93515000000 48112000000 45403000000 5987 520 5580 32004;32005;32006;32007;32008;32009;32010;32011;32012;32013;32014;32015;32016;32017;32018;32019;32020;32021;32022;32023;32024;32025;32026;32027;32028;32029;32030;32031;32032;32033;32034;32035 38231;38232;38233;38234;38235;38236;38237;38238;38239;38240;38241;38242;38243;38244;38245;38246;38247;38248;38249;38250;38251;38252;38253;38254;38255;38256;38257;38258;38259;38260;38261;38262;38263;38264;38265;38266;38267;38268;38269;38270;38271;38272;38273;38274;38275;38276;38277;38278;38279;38280 38255 50 FTATASLGVIHK Unmodified 1243.6925 0.69247202 2575 Q99460;Q99460-2 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.8 0.748 2 2 1 2 3 52.496 52.328 3 1.7923E-07 16500 20211116_3429_TMUAki_TMT10x_P_F2 128.36 99.619 16658000 27554000 55211 29254000 27360000 30551000 19278000 21357000 20353000 20870000 23176000 15509000 25717000 1347600 29743000 26019000 30836000 20011000 22164000 20758000 20403000 22269000 5 5 1 5 5 5 5 5 5 5 5 10461000 16529000 0 17655000 20844000 24889000 13419000 13009000 12047000 12885000 13757000 9738400 15427000 830290 18039000 19788000 24642000 13957000 13823000 12376000 12589000 13218000 3 3 0 3 3 3 3 3 3 3 3 6197600 11025000 55211 11599000 6515500 5661500 5859600 8348300 8306100 7985300 9418700 5770500 10290000 517320 11704000 6230800 6194200 6053600 8341500 8382400 7813800 9051400 2 2 1 2 2 2 2 2 2 2 2 1645500000 988360000 657170000 5988 2575 5581 32036;32037;32038;32039;32040 38281;38282;38283;38284 38281 4 FTAVEDQYYCVDCYK Unmodified 1959.8019 0.8019004 1659 Q13642-1;Q13642-5;Q13642-4;Q13642 FHL1 Four and a half LIM domains protein 1 yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 67.038 66.968 3 0.00068373 20504 20211116_3444_TMUAki_TMT10x_S_F5 70.98 60.192 3582100 5994300 51724 5568700 4042800 3786500 4575900 4075100 3245200 4265100 5016300 3335700 5591700 351640 5684400 3893000 3973800 4572500 4134400 3422500 4157700 4784200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3582100 5994300 51724 5568700 4042800 3786500 4575900 4075100 3245200 4265100 5016300 3335700 5591700 351640 5684400 3893000 3973800 4572500 4134400 3422500 4157700 4784200 1 1 1 1 1 1 1 1 1 1 1 748930000 0 748930000 5989 1659 5582 32041;32042 38285 38285 1 FTDEEVDELYR Unmodified 1414.6252 0.62523989 145 O14950;P19105 MYL12B;MYL12A Myosin regulatory light chain 12B;Myosin regulatory light chain 12A yes no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 60.114 59.928 2 5.3663E-30 18076 20211116_3428_TMUAki_TMT10x_P_F1 270.19 236.64 14855000 26062000 131000 26516000 17994000 22860000 17246000 17008000 18123000 18432000 20129000 13831000 24320000 1279300 26964000 17235000 23382000 17559000 17630000 18470000 17943000 19355000 4 4 2 4 4 4 4 4 4 4 4 6997800 12068000 131000 12212000 11768000 16153000 10305000 8595300 8907100 8959500 9795300 6516600 11261000 769060 12507000 11254000 16043000 10486000 9131400 9154100 8735300 9421600 2 2 2 2 2 2 2 2 2 2 2 7856800 13994000 0 14304000 6226100 6706500 6941000 8412300 9215900 9473000 10333000 7314500 13059000 510190 14457000 5980100 7339100 7073600 8498700 9315700 9208100 9933600 2 2 0 2 2 2 2 2 2 2 2 2200700000 1617400000 583260000 5990 145 5583 32043;32044;32045 38286;38287;38288;38289 38286 4 FTDILVR Unmodified 862.49125 0.49125301 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 58.601 58.937 2 0.0012651 18956 20211116_3435_TMUAki_TMT10x_P_F7 139.54 40.737 20496000 32587000 72733 28820000 28649000 33992000 23338000 29875000 28819000 28564000 30235000 19084000 30393000 1786600 29745000 27334000 34217000 24120000 30544000 29129000 27952000 29123000 4 4 2 4 4 4 4 4 4 4 4 10028000 15161000 52982 13881000 17668000 23064000 12345000 13955000 13579000 13115000 13966000 9336800 14142000 932450 14389000 16807000 22725000 12839000 14623000 13774000 12843000 13460000 2 2 1 2 2 2 2 2 2 2 2 10469000 17426000 19750 14939000 10981000 10928000 10993000 15920000 15240000 15450000 16269000 9747100 16251000 854100 15356000 10528000 11492000 11281000 15921000 15355000 15108000 15662000 2 2 1 2 2 2 2 2 2 2 2 2050900000 1085600000 965360000 5991 196 5584 32046;32047;32048;32049 38290;38291;38292;38293 38291 4 FTDTRKDEQER Unmodified 1423.6692 0.66917039 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 2 By MS/MS 4 0 1 1 28.433 28.477 3 3.7999E-07 5748 20211116_3431_TMUAki_TMT10x_P_F4 107.09 76.36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5992 653 5585 32050 38294 38294 1 FTEDSLLR Unmodified 979.49746 0.4974606 811 P26358;P26358-2;P26358-3 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 0 0 0 0 By matching By MS/MS 3.33 0.471 2 1 1 2 52.357 52.11 2 0.0082178 18004 20211116_3441_TMUAki_TMT10x_S_F3 87.181 42.46 5062900 8025300 83846 8847700 5215500 4398000 4192400 7008700 6628400 5737200 7272900 4714700 7491500 500030 8901500 4980200 4813500 4381400 6956200 6659500 5655600 6995900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5062900 8025300 83846 8847700 5215500 4398000 4192400 7008700 6628400 5737200 7272900 4714700 7491500 500030 8901500 4980200 4813500 4381400 6956200 6659500 5655600 6995900 2 2 2 2 2 2 2 2 2 2 2 191980000 108880000 83102000 5993 811 5586 32051;32052;32053 38295;38296;38297 38295 3 FTEQVEAAVEALSSDPAQPMDENEFIDASR Oxidation (M) 3311.4776 0.47759596 922 P35221;P35221-2;P35221-3 CTNNA1 Catenin alpha-1 yes no 0 0 1 0 By MS/MS 1 0 1 1 81.058 81.058 3 2.0693E-06 26734 20211116_3428_TMUAki_TMT10x_P_F1 68.733 62.94 658200 827990 12060 1269500 471490 895790 552560 382770 415570 506890 514290 612940 774260 63194 1258400 454860 924090 552000 418780 432270 489940 493060 1 1 1 1 1 1 1 1 1 1 1 658200 827990 12060 1269500 471490 895790 552560 382770 415570 506890 514290 612940 774260 63194 1258400 454860 924090 552000 418780 432270 489940 493060 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 655670000 655670000 0 5994 922 5587 32054 38298 38298 1161 1 FTFPDPPPLSPPVLGLHGVTFGYQGQKPLFK Unmodified 3380.7962 0.79615581 2241 Q8NE71;Q8NE71-2 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 0 1 By MS/MS 5.67 0.471 1 2 3 78.773 78.765 4;5 2.4915E-20 25629 20211116_3445_TMUAki_TMT10x_S_F6 129.61 121.48 15605000 25745000 0 25645000 19316000 15046000 18652000 11114000 9718300 11691000 17383000 14529000 24022000 1251400 26010000 18498000 15893000 18678000 11515000 10550000 11394000 16532000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15605000 25745000 0 25645000 19316000 15046000 18652000 11114000 9718300 11691000 17383000 14529000 24022000 1251400 26010000 18498000 15893000 18678000 11515000 10550000 11394000 16532000 2 2 0 2 2 2 2 2 2 2 2 2492700000 0 2492700000 5995 2241 5588 32055;32056;32057 38299;38300 38300 2 FTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPK Unmodified 3701.8478 0.84781005 2250 Q8NFF5;Q8NFF5-3;Q8NFF5-2;Q8NFF5-4;Q8NFF5-5 FLAD1 FAD synthase;Molybdenum cofactor biosynthesis protein-like region;FAD synthase region yes no 0 0 0 1 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 77.055 77.11 6 3.2807E-11 27047 20211116_3446_TMUAki_TMT10x_S_F7 95.302 84.88 16270000 28189000 414830 25434000 19433000 27090000 21424000 16773000 17073000 18180000 20976000 15152000 26293000 1779800 26166000 18708000 27263000 21493000 17616000 17698000 17697000 20114000 3 3 3 3 3 3 3 3 3 3 3 9550300 15790000 99216 14422000 9485500 18698000 12169000 10067000 9580600 10352000 12210000 8893000 14729000 883350 14873000 9168600 18590000 12123000 10680000 9953200 10099000 11697000 2 2 2 2 2 2 2 2 2 2 2 6719200 12398000 315620 11013000 9947500 8391900 9254800 6705400 7492400 7827400 8766100 6258600 11564000 896430 11293000 9539800 8672900 9369200 6936300 7744600 7598400 8416900 1 1 1 1 1 1 1 1 1 1 1 3085400000 2129000000 956440000 5996 2250 5589 32058;32059;32060 38301;38302;38303 38303 3 FTILGGK Unmodified 734.43268 0.4326755 2567 Q96TA2;Q96TA2-3;Q96TA2-2 YME1L1 ATP-dependent zinc metalloprotease YME1L1 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 51.971 51.761 2 0.10375 16334 20211116_3429_TMUAki_TMT10x_P_F2 53.554 2.5884 12452000 19148000 26373 20763000 18138000 19351000 13353000 14234000 14182000 14073000 16098000 11593000 17873000 1018700 21046000 17266000 19685000 13821000 14726000 14459000 13751000 15470000 3 3 1 3 3 3 3 3 3 3 3 6092400 9052200 0 9625400 12370000 13711000 7475700 7560600 7480300 7397400 7680900 5671900 8448800 495310 9840100 11731000 13577000 7839000 7992600 7616900 7231400 7403300 1 1 0 1 1 1 1 1 1 1 1 6359600 10096000 26373 11137000 5768800 5640100 5877700 6673300 6701300 6675200 8417600 5921400 9424600 523430 11206000 5534500 6108000 5981800 6732900 6842200 6519300 8067000 2 2 1 2 2 2 2 2 2 2 2 429620000 259720000 169900000 5997 2567 5590 32061;32062 38304 38304 1 FTISDHPQPIDPLLK Unmodified 1719.9196 0.91957142 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 7 0.894 2 1 2 3 2 65.108 65.248 3 3.702E-07 21507 20211116_3435_TMUAki_TMT10x_P_F7 116.96 96.298 43008000 76936000 980770 73121000 55047000 83752000 50295000 59323000 46936000 53808000 55365000 40052000 71775000 4648300 75024000 52721000 84116000 51161000 61384000 48195000 52779000 53148000 8 8 8 8 8 8 8 8 8 8 8 27778000 45829000 490360 46018000 32303000 65496000 32764000 34955000 29681000 33519000 34108000 25868000 42764000 2823300 47224000 31014000 64835000 33114000 37038000 30487000 32795000 32766000 5 5 5 5 5 5 5 5 5 5 5 15230000 31107000 490420 27103000 22744000 18256000 17531000 24369000 17255000 20289000 21257000 14184000 29011000 1824900 27800000 21707000 19281000 18046000 24346000 17708000 19984000 20382000 3 3 3 3 3 3 3 3 3 3 3 4493000000 2608700000 1884300000 5998 2116 5591 32063;32064;32065;32066;32067 38305;38306;38307;38308;38309;38310;38311;38312 38307 8 FTITPPTAQVVGVLK Unmodified 1569.913 0.91302948 1192 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.11 0.737 2 4 3 4 5 77.214 77.145 2;3 2.6962E-33 28097 20211116_3441_TMUAki_TMT10x_S_F3 226.33 188.78 53835000 91499000 162140 85560000 66759000 77659000 65411000 53191000 52219000 55758000 65925000 50124000 85356000 4498100 87586000 63968000 79051000 66011000 55393000 54188000 54350000 63171000 9 9 4 9 9 9 9 9 9 9 9 23932000 40024000 76466 37411000 24849000 46814000 30081000 23387000 22032000 24939000 28901000 22283000 37337000 2010700 38490000 23959000 46585000 29990000 25007000 23009000 24292000 27667000 4 4 2 4 4 4 4 4 4 4 4 29903000 51475000 85671 48149000 41910000 30845000 35329000 29805000 30187000 30819000 37023000 27841000 48019000 2487400 49096000 40010000 32466000 36021000 30386000 31178000 30058000 35503000 5 5 2 5 5 5 5 5 5 5 5 11848000000 5535600000 6312200000 5999 1192 5592 32068;32069;32070;32071;32072;32073;32074;32075;32076 38313;38314;38315;38316;38317;38318;38319;38320;38321;38322 38319 10 FTITPSTTQVVGILK Unmodified 1603.9185 0.91850879 1062 P47755 CAPZA2 F-actin-capping protein subunit alpha-2 yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 2 4 3 3 77.092 77.056 2;3 7.0704E-19 25896 20211116_3442_TMUAki_TMT10x_S_F4 160.56 124.23 9407200 16285000 70706 14636000 12067000 11744000 11929000 9954700 8387800 9285500 12169000 8758800 15189000 792700 15005000 11566000 12102000 11998000 10191000 8822200 9096300 11621000 3 3 2 3 3 3 3 3 3 3 3 2333100 3744500 36484 3471600 2414800 4376800 3023700 2354200 1971600 2370900 2879700 2172600 3493000 228580 3574400 2332900 4357500 3002700 2496200 2084000 2314900 2749800 1 1 1 1 1 1 1 1 1 1 1 7074100 12540000 34222 11165000 9652600 7366900 8905600 7600400 6416200 6914600 9288800 6586200 11696000 564130 11430000 9232800 7744400 8995300 7695300 6738200 6781400 8871700 2 2 1 2 2 2 2 2 2 2 2 3004500000 1716400000 1288100000 6000 1062 5593 32077;32078;32079;32080;32081;32082 38323;38324;38325;38326 38326 4 FTLAGHTK Unmodified 873.47085 0.47085192 1326 P61964 WDR5 WD repeat-containing protein 5 yes yes 0 0 0 0 By matching By MS/MS 1 0 2 1 1 36.344 36.314 3 0.010854 10480 20211116_3439_TMUAki_TMT10x_S_F1 63.227 35.599 615460 963640 1889.5 976750 569830 523370 653750 526720 513300 501590 732920 573070 899220 52148 988740 548610 561220 654390 534610 536130 490910 700220 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 615460 963640 1889.5 976750 569830 523370 653750 526720 513300 501590 732920 573070 899220 52148 988740 548610 561220 654390 534610 536130 490910 700220 1 1 1 1 1 1 1 1 1 1 1 25464000 11153000 14311000 6001 1326 5594 32083;32084 38327 38327 1 FTLDCTHPVEDGIMDAANFEQFLQER Oxidation (M) 3098.375 0.37498557 931 P35268 RPL22 60S ribosomal protein L22 yes yes 0 0 1 0 By MS/MS By MS/MS 1.44 0.496 9 7 10 6 72.25 72.22 3;4 4.7191E-39 27933 20211116_3439_TMUAki_TMT10x_S_F1 188.24 169.99 37344000 59682000 262100 54665000 41162000 54520000 42289000 35195000 35553000 38357000 44366000 34771000 55671000 2925600 56119000 39491000 55116000 42628000 36854000 36777000 37331000 42526000 24 24 10 24 24 24 24 24 24 24 24 18966000 29345000 78196 26352000 16953000 33761000 19099000 18174000 18213000 19363000 22422000 17658000 27371000 1290700 27206000 16301000 33587000 19233000 19301000 18717000 18862000 21500000 14 14 4 14 14 14 14 14 14 14 14 18378000 30337000 183910 28312000 24210000 20758000 23190000 17021000 17340000 18995000 21944000 17112000 28300000 1634900 28913000 23190000 21529000 23395000 17553000 18060000 18470000 21026000 10 10 6 10 10 10 10 10 10 10 10 11949000000 7356000000 4593400000 6002 931 5595 32085;32086;32087;32088;32089;32090;32091;32092;32093;32094;32095;32096;32097;32098;32099;32100 38328;38329;38330;38331;38332;38333;38334;38335;38336;38337;38338;38339;38340;38341;38342;38343;38344;38345;38346;38347;38348;38349;38350 38344 1168 23 FTLDCTHPVEDGIMDAANFEQFLQER Unmodified 3082.3801 0.38007094 931 P35268 RPL22 60S ribosomal protein L22 yes yes 0 0 0 0 By MS/MS 2 0 1 1 79.986 79.967 3 2.8548E-12 26488 20211116_3440_TMUAki_TMT10x_S_F2 110.31 98.784 2411800 4174200 0 3982700 2857300 1805800 2897900 1409700 1243100 1721300 2712200 2245600 3894200 195280 4044000 2740000 1965000 2886100 1462600 1389200 1668200 2570900 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2411800 4174200 0 3982700 2857300 1805800 2897900 1409700 1243100 1721300 2712200 2245600 3894200 195280 4044000 2740000 1965000 2886100 1462600 1389200 1668200 2570900 2 2 0 2 2 2 2 2 2 2 2 946190000 0 946190000 6003 931 5595 32101 38351;38352 38351 2 FTLNPNPTGVQNPHIER Unmodified 1932.9806 0.98060855 1038 P45985;P45985-2 MAP2K4 Dual specificity mitogen-activated protein kinase kinase 4 yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 46.939 47.504 3 1.9752E-15 14840 20211116_3446_TMUAki_TMT10x_S_F7 137.32 124.49 2465500 4613100 30657 4573100 5829500 6897200 3821700 3959300 4154700 3264800 3935500 2295800 4304300 270810 4702900 5540300 6817000 3991800 4153000 4204400 3217200 3803200 2 2 1 2 2 2 2 2 2 2 2 2465500 4613100 30657 4573100 5829500 6897200 3821700 3959300 4154700 3264800 3935500 2295800 4304300 270810 4702900 5540300 6817000 3991800 4153000 4204400 3217200 3803200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 435840000 435840000 0 6004 1038 5596 32102;32103;32104 38353;38354;38355;38356 38356 4 FTLRDEGK Unmodified 964.49779 0.49779495 681 P15170-3;P15170-2;P15170;Q8IYD1 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes no 0 0 0 1 By MS/MS By MS/MS 5 0.707 1 2 1 3 1 36.773 36.81 3 0.00058976 8328 20211116_3444_TMUAki_TMT10x_S_F5 127.94 32.587 3199700 5038000 86770 4959800 5434600 5302800 4095300 3920400 3989600 3391000 4242700 2979900 4700700 377450 5070500 5182500 5349900 4220800 4039900 4072300 3333600 4085000 4 4 4 4 4 4 4 4 4 4 4 2402400 3753400 86723 3680100 4483200 4553300 3173500 3126000 3100400 2632500 3193900 2237600 3502000 309140 3772500 4271000 4552700 3285200 3235600 3160700 2591400 3078100 3 3 3 3 3 3 3 3 3 3 3 797310 1284600 46.975 1279700 951370 749440 921880 794450 889180 758440 1048900 742370 1198700 68304 1297900 911480 797200 935630 804400 911690 742220 1006900 1 1 1 1 1 1 1 1 1 1 1 172830000 126350000 46483000 6005 681 5597 32105;32106;32107;32108 38357;38358;38359 38359 3 FTLTQSEADADILFNFSHFK Unmodified 2330.1219 0.12191263 1688 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 79.544 79.581 3 5.4073E-09 27682 20211116_3435_TMUAki_TMT10x_P_F7 105.79 88.085 7080800 11028000 154590 10662000 7168800 9021900 7859900 5351100 5115500 6236400 7512200 6594100 10289000 732350 10879000 6900500 9209600 7851500 5652400 5409200 6054400 7172500 2 2 2 2 2 2 2 2 2 2 2 4325900 6304600 78531 5646800 3461200 6332800 3910500 2984000 3062300 3654000 4473900 4028500 5880400 419730 5817400 3334800 6333900 3916800 3223000 3202500 3541100 4272100 1 1 1 1 1 1 1 1 1 1 1 2754900 4723300 76057 5015500 3707600 2689100 3949400 2367000 2053200 2582400 3038200 2565700 4408400 312630 5061200 3565700 2875700 3934700 2429300 2206700 2513300 2900400 1 1 1 1 1 1 1 1 1 1 1 2021900000 990420000 1031500000 6006 1688 5598 32109;32110 38360;38361 38360 2 FTLWGLETIPGPDAK Unmodified 1643.8559 0.85590853 2281 Q8TDP1 RNASEH2C Ribonuclease H2 subunit C yes yes 0 0 0 0 By MS/MS 8 0 1 1 79.637 79.623 3 0.00022916 25642 20211116_3447_TMUAki_TMT10x_S_F8 73.887 52.329 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6007 2281 5599 32111 38362 38362 1 FTMDCVAPTIHVYEHHENR Oxidation (M) 2371.0474 0.047384258 215 O43402 EMC8 ER membrane protein complex subunit 8 yes yes 0 0 1 0 By matching By MS/MS 5 0 2 1 1 37.451 37.523 5 2.1365E-08 8507 20211116_3444_TMUAki_TMT10x_S_F5 106.67 91.074 211720 353640 0 433680 217200 170370 184350 350750 312510 288460 365180 197050 330280 8466.7 432840 206840 193850 192680 345650 314180 284290 350640 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 211720 353640 0 433680 217200 170370 184350 350750 312510 288460 365180 197050 330280 8466.7 432840 206840 193850 192680 345650 314180 284290 350640 1 1 0 1 1 1 1 1 1 1 1 178110000 120910000 57192000 6008 215 5600 32112;32113 38363 38363 173 1 FTPGTFTNQIQAAFR Unmodified 1697.8526 0.85255449 565 P08865 RPSA 40S ribosomal protein SA yes yes 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 2 4 4 5 5 76.714 76.701 2;3 2.2185E-61 25315 20211116_3431_TMUAki_TMT10x_P_F4 313.05 277.78 55922000 97188000 167370 83435000 59185000 83946000 67848000 58347000 60203000 62486000 71555000 52066000 90635000 4044200 86097000 56945000 84912000 68132000 60739000 61984000 60857000 68675000 11 11 5 11 11 11 11 11 11 11 11 22893000 36373000 150200 31534000 23711000 45638000 27003000 20846000 21661000 24936000 26407000 21316000 33922000 1719100 32722000 22825000 45066000 27053000 22569000 22438000 24185000 25327000 5 5 2 5 5 5 5 5 5 5 5 33029000 60815000 17174 51901000 35474000 38307000 40845000 37501000 38542000 37550000 45148000 30749000 56713000 2325200 53374000 34120000 39846000 41079000 38170000 39545000 36671000 43348000 6 6 3 6 6 6 6 6 6 6 6 11152000000 6545400000 4606600000 6009 565 5601 32114;32115;32116;32117;32118;32119;32120;32121;32122;32123 38364;38365;38366;38367;38368;38369;38370;38371;38372;38373;38374;38375 38365 12 FTPGTFTNQIQAAFREPR Unmodified 2080.049 0.049022463 565 P08865 RPSA 40S ribosomal protein SA yes yes 0 0 0 1 By MS/MS By MS/MS 4.58 1.33 2 6 7 9 7 2 11 22 57.545 57.541 3;4 1.4158E-58 25151 20211116_3441_TMUAki_TMT10x_S_F3 255.24 219.77 185190000 309830000 2010000 283990000 211030000 233820000 207510000 170590000 155410000 168470000 222120000 172430000 289010000 16009000 290790000 202270000 239870000 209060000 176570000 162750000 164620000 212210000 42 42 24 42 42 42 42 42 42 42 42 82472000 135390000 488500 120130000 78747000 134610000 90020000 74510000 68696000 73810000 96567000 76789000 126280000 6722400 123850000 75786000 134890000 90061000 78769000 71808000 72115000 92292000 22 22 12 22 22 22 22 22 22 22 22 102710000 174440000 1521500 163860000 132280000 99207000 117490000 96082000 86712000 94656000 125550000 95640000 162730000 9286800 166940000 126490000 104980000 119000000 97805000 90939000 92505000 119920000 20 20 12 20 20 20 20 20 20 20 20 112470000000 58697000000 53769000000 6010 565 5602 32124;32125;32126;32127;32128;32129;32130;32131;32132;32133;32134;32135;32136;32137;32138;32139;32140;32141;32142;32143;32144;32145;32146;32147;32148;32149;32150;32151;32152;32153;32154;32155;32156 38376;38377;38378;38379;38380;38381;38382;38383;38384;38385;38386;38387;38388;38389;38390;38391;38392;38393;38394;38395;38396;38397;38398;38399;38400;38401;38402;38403;38404;38405;38406;38407;38408;38409;38410;38411;38412;38413;38414;38415;38416;38417;38418;38419;38420;38421;38422;38423;38424;38425 38401 50 FTQAGSEVSALLGR Unmodified 1434.7467 0.74669243 518 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 7.09 0.793 3 4 4 6 5 69.026 69.146 2;3 5.8679E-43 21332 20211116_3447_TMUAki_TMT10x_S_F8 260.28 225.01 72442000 122780000 402550 114840000 81413000 130330000 90767000 88864000 93094000 90521000 94902000 67449000 114530000 5904700 117950000 78283000 130890000 91652000 92493000 94670000 88339000 91492000 14 14 7 14 14 14 14 14 14 14 14 50737000 83540000 141920 78090000 59910000 103820000 66732000 61209000 63973000 62003000 64422000 47238000 77931000 4007800 80434000 57595000 103220000 67247000 64407000 65219000 60523000 62131000 9 9 3 9 9 9 9 9 9 9 9 21705000 39236000 260640 36754000 21504000 26513000 24035000 27655000 29121000 28518000 30480000 20210000 36602000 1896900 37517000 20689000 27667000 24405000 28086000 29451000 27817000 29361000 5 5 4 5 5 5 5 5 5 5 5 23951000000 12563000000 11388000000 6011 518 5603 32157;32158;32159;32160;32161;32162;32163;32164;32165;32166;32167 38426;38427;38428;38429;38430;38431;38432;38433;38434;38435;38436;38437;38438;38439 38438 14 FTQDTQPHYIYSPR Unmodified 1751.8267 0.82673367 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.2 0.748 1 2 2 2 3 42.177 42.457 3 3.3007E-19 12403 20211116_3435_TMUAki_TMT10x_P_F7 169.37 145.52 6614000 11289000 79609 12731000 13567000 13023000 8940600 10194000 10023000 8513800 10117000 6158700 10539000 692370 12890000 12895000 13185000 9344200 10457000 10152000 8384300 9756200 8 8 6 8 8 8 8 8 8 8 8 3673200 6319800 62739 7181000 10763000 10708000 6528100 6045100 5755800 4874500 5621000 3420600 5900200 462300 7317700 10217000 10587000 6819300 6346500 5884600 4808900 5426500 3 3 3 3 3 3 3 3 3 3 3 2940800 4968900 16870 5550100 2803600 2314100 2412500 4149100 4266700 3639400 4495600 2738000 4638700 230070 5572600 2677600 2598300 2524900 4110700 4267600 3575400 4329700 5 5 3 5 5 5 5 5 5 5 5 1016600000 725180000 291380000 6012 1695 5604 32168;32169;32170;32171;32172 38440;38441;38442;38443;38444;38445;38446;38447 38441 8 FTQLDLEDVQVR Unmodified 1461.7464 0.74635808 2946 Q9NTJ3;Q9NTJ3-2 SMC4 Structural maintenance of chromosomes protein 4 yes no 0 0 0 0 By MS/MS By MS/MS 3.4 0.49 3 2 3 2 66.983 66.857 2 1.6358E-19 21792 20211116_3442_TMUAki_TMT10x_S_F4 229.68 198.61 11484000 18531000 70763 19106000 13034000 14632000 11994000 14566000 14526000 14398000 15225000 10693000 17293000 976860 19384000 12471000 15180000 12299000 14808000 14692000 14069000 14665000 3 3 1 3 3 3 3 3 3 3 3 3103200 4859000 0 5318200 4044900 6771400 4300800 4295300 4370800 3889700 4265900 2889400 4535700 262610 5414800 3884400 6753000 4351300 4480000 4439800 3815600 4118400 1 1 0 1 1 1 1 1 1 1 1 8380700 13672000 70763 13788000 8988800 7860100 7693200 10271000 10155000 10508000 10959000 7803400 12758000 714260 13969000 8587000 8427200 7947500 10328000 10252000 10253000 10547000 2 2 1 2 2 2 2 2 2 2 2 1784100000 956340000 827740000 6013 2946 5605 32173;32174;32175;32176;32177 38448;38449;38450;38451;38452 38452 5 FTRPLFK Unmodified 907.52797 0.52797287 589 P09960;P09960-4 LTA4H Leukotriene A-4 hydrolase yes no 0 0 0 1 By MS/MS By MS/MS 5.25 0.829 1 1 2 3 1 45.705 45.832 3 0.02719 12152 20211116_3445_TMUAki_TMT10x_S_F6 68.422 44.865 5521300 8145700 51671 9860200 9180700 8676400 5774200 5851700 5928100 5696400 7222000 5141200 7607200 543490 9920200 8719400 8848500 6039900 6087500 6070000 5569800 6926800 3 3 2 3 3 3 3 3 3 3 3 3732700 5500300 51671 6667000 7675000 7175400 4025600 3946100 3949800 3841400 4846700 3475900 5136800 412840 6726600 7270600 7205900 4271800 4171900 4053300 3756000 4647700 2 2 2 2 2 2 2 2 2 2 2 1788600 2645400 0 3193200 1505600 1501000 1748600 1905600 1978300 1854900 2375300 1665300 2470500 130650 3193500 1448900 1642600 1768100 1915500 2016600 1813700 2279100 1 1 0 1 1 1 1 1 1 1 1 344870000 245110000 99761000 6014 589 5606 32178;32179;32180;32181 38453;38454;38455;38456 38456 4 FTSLRPLLGGIPESGGPDAR Unmodified 2039.08 0.079988241 2160 Q8IXM6;Q8IXM6-2 NRM Nurim yes no 0 0 0 1 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 66.387 66.208 3 1.3957E-58 20934 20211116_3440_TMUAki_TMT10x_S_F2 240.42 213.53 15549000 25141000 272900 24095000 16481000 24750000 17579000 14759000 14725000 15139000 19362000 14479000 23455000 1525900 24665000 15845000 24949000 17686000 15521000 15270000 14770000 18534000 5 5 4 5 5 5 5 5 5 5 5 11959000 18884000 111110 17744000 12432000 21077000 13232000 11091000 11124000 11494000 14842000 11136000 17616000 1071100 18232000 11945000 21042000 13314000 11793000 11541000 11209000 14202000 4 4 3 4 4 4 4 4 4 4 4 3590100 6257100 161790 6351100 4049000 3673400 4347600 3667900 3601600 3645200 4520200 3343900 5838900 454850 6432500 3899700 3907300 4371200 3728900 3729300 3561000 4332000 1 1 1 1 1 1 1 1 1 1 1 2471600000 1685700000 785950000 6015 2160 5607 32182;32183;32184 38457;38458;38459;38460;38461 38461 5 FTTDDSICVLGISKR Unmodified 1710.8611 0.86107026 1487 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 1 By MS/MS 8 0 1 1 61.77 61.958 3 8.2262E-10 18957 20211116_3436_TMUAki_TMT10x_P_F8 134.14 112.27 7641500 11046000 0 9978100 12016000 18693000 10949000 12912000 11488000 10289000 10983000 7114600 10303000 651690 10385000 11492000 18376000 11179000 13341000 11646000 10157000 10611000 1 1 0 1 1 1 1 1 1 1 1 7641500 11046000 0 9978100 12016000 18693000 10949000 12912000 11488000 10289000 10983000 7114600 10303000 651690 10385000 11492000 18376000 11179000 13341000 11646000 10157000 10611000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 777480000 777480000 0 6016 1487 5608 32185 38462 38462 1 FTVAESCDR Unmodified 1083.4655 0.46550855 1512 Q04726;Q04726-3;Q04726-2;Q04726-7;Q04726-6;Q04726-5;Q04726-4 TLE3 Transducin-like enhancer protein 3 yes no 0 0 0 0 By MS/MS 3 0 1 1 36.505 36.258 2 0.0074504 11536 20211116_3441_TMUAki_TMT10x_S_F3 74.376 50.356 450200 798380 0 799020 452910 421870 501790 439290 435550 416040 647850 419170 744970 34864 809450 435340 453430 504380 445060 453530 407280 618390 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 450200 798380 0 799020 452910 421870 501790 439290 435550 416040 647850 419170 744970 34864 809450 435340 453430 504380 445060 453530 407280 618390 1 1 0 1 1 1 1 1 1 1 1 33572000 0 33572000 6017 1512 5609 32186 38463 38463 1 FTVETASR Unmodified 909.4556 0.45559579 625 P11388;P11388-2;P11388-3;P11388-4 TOP2A DNA topoisomerase 2-alpha yes no 0 0 0 0 By MS/MS 4 0 4 4 30.948 31.009 2 0.0056132 7353 20211116_3442_TMUAki_TMT10x_S_F4 87.323 56.033 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6018 625 5610 32187;32188;32189;32190 38464;38465;38466;38467 38466 4 FTVNLSGCPR Unmodified 1149.5601 0.56007764 2663 Q9BTE3;Q9BTE3-2;Q9BTE3-3 MCMBP Mini-chromosome maintenance complex-binding protein yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 49.54 49.375 2 1.2399E-09 15338 20211116_3429_TMUAki_TMT10x_P_F2 188.87 150.57 4214800 6883600 17768 7569700 6353200 6490700 4151100 5386300 5409200 4492300 5959000 3924600 6425700 395950 7657700 6037500 6654000 4364700 5505400 5467400 4424300 5731400 2 2 2 2 2 2 2 2 2 2 2 2101200 3306500 17001 3624700 4430800 4793300 2641700 2673300 2674900 2278100 2799900 1956600 3086500 222680 3692800 4204500 4763400 2774100 2813200 2724300 2241200 2697100 1 1 1 1 1 1 1 1 1 1 1 2113600 3577000 767 3945000 1922400 1697300 1509400 2713000 2734200 2214300 3159100 1968000 3339100 173270 3964900 1832900 1890600 1590500 2692200 2743100 2183100 3034300 1 1 1 1 1 1 1 1 1 1 1 1036100000 751970000 284170000 6019 2663 5611 32191;32192;32193;32194 38468;38469 38468 2 FTVPMLK Oxidation (M) 850.46226 0.46226107 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 1 0 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 59.583 59.355 2 0.074279 19443 20211116_3429_TMUAki_TMT10x_P_F2 68.422 38.848 33639000 52417000 114790 57165000 47237000 50643000 38394000 38646000 38273000 36015000 43520000 31321000 48928000 2947300 57885000 45069000 51725000 39403000 39819000 39128000 35282000 41819000 6 6 2 6 6 6 6 6 6 6 6 20432000 31622000 114790 34589000 34633000 38431000 26153000 21627000 21491000 19855000 24853000 19025000 29517000 1910400 35135000 32995000 38536000 26827000 22784000 22187000 19464000 23871000 3 3 2 3 3 3 3 3 3 3 3 13207000 20796000 0 22575000 12605000 12213000 12241000 17019000 16782000 16160000 18667000 12296000 19411000 1036900 22750000 12073000 13189000 12576000 17035000 16941000 15818000 17949000 3 3 0 3 3 3 3 3 3 3 3 2356500000 1478200000 878300000 6020 647 5612 32195;32196;32197;32198 38470;38471 38470 691 2 FTVPMLK Unmodified 834.46735 0.46734645 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 66.202 65.88 2 0.002867 22534 20211116_3430_TMUAki_TMT10x_P_F3 121.29 74.629 67706000 102460000 346590 122940000 84005000 67715000 69439000 38690000 30133000 43543000 70777000 63040000 95686000 5699600 123140000 80172000 71738000 69980000 40948000 33818000 42326000 67017000 6 6 4 6 6 6 6 6 6 6 6 28291000 41964000 180060 50240000 47783000 43900000 36665000 16438000 12737000 18879000 28798000 26343000 39188000 2786300 50574000 45548000 44496000 37031000 18172000 14574000 18337000 27283000 3 3 3 3 3 3 3 3 3 3 3 39416000 60500000 166530 72698000 36221000 23815000 32774000 22253000 17397000 24664000 41979000 36698000 56498000 2913300 72571000 34624000 27241000 32949000 22776000 19243000 23989000 39734000 3 3 1 3 3 3 3 3 3 3 3 3665600000 2028400000 1637200000 6021 647 5612 32199;32200;32201;32202 38472;38473;38474;38475;38476;38477 38474 6 FTYRSDSFENPVLQQHFR Unmodified 2270.0869 0.086864533 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 1 By MS/MS 1 0 1 1 54.067 53.771 4 8.838E-05 17595 20211116_3439_TMUAki_TMT10x_S_F1 79.121 67.144 1485200 2538000 9517.9 2572900 1566600 1375200 1315800 2322200 1929900 1867800 2231600 1383000 2368400 133140 2604400 1496400 1496200 1366800 2299700 1947200 1842900 2143400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1485200 2538000 9517.9 2572900 1566600 1375200 1315800 2322200 1929900 1867800 2231600 1383000 2368400 133140 2604400 1496400 1496200 1366800 2299700 1947200 1842900 2143400 1 1 1 1 1 1 1 1 1 1 1 215690000 0 215690000 6022 647 5613 32203 38478 38478 1 FVADGIFK Unmodified 895.48035 0.48035398 783 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 0 By MS/MS By MS/MS 6.33 1.15 3 2 2 2 4 5 64.75 64.935 2 0.00044427 19651 20211116_3447_TMUAki_TMT10x_S_F8 150.84 112.05 133210000 211890000 2359900 238660000 149240000 201190000 129870000 134030000 134820000 143860000 147680000 124050000 197810000 13388000 241020000 142750000 205760000 132900000 139960000 137390000 140100000 142060000 9 9 8 9 9 9 9 9 9 9 9 81519000 125140000 1149800 137590000 119880000 157590000 81007000 82038000 90169000 84128000 95978000 75910000 116820000 8287900 139780000 114040000 157610000 84485000 87287000 91537000 82077000 92406000 6 6 5 6 6 6 6 6 6 6 6 51692000 86745000 1210000 101070000 29358000 43597000 48865000 51992000 44648000 59734000 51703000 48139000 80995000 5100500 101240000 28713000 48148000 48416000 52670000 45857000 58020000 49657000 3 3 3 3 3 3 3 3 3 3 3 14161000000 8124300000 6037100000 6023 783 5614 32204;32205;32206;32207;32208;32209;32210;32211;32212 38479;38480;38481;38482;38483;38484;38485;38486;38487;38488;38489 38489 11 FVADGIFKAELNEFLTR Unmodified 1969.0309 0.030912783 783 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 80.074 80.082 3 1.977E-07 25856 20211116_3447_TMUAki_TMT10x_S_F8 102.98 86.856 7234900 13148000 86501 9668300 9088400 11519000 8810600 8525200 8869000 8733900 9316600 6736100 12256000 590890 10137000 8705100 11553000 8953300 8825200 9036000 8521400 8973500 2 2 1 2 2 2 2 2 2 2 2 3669700 7040600 0 5040100 3755800 7720800 4315300 4998000 5055000 4788400 4769900 3415900 6562200 189940 5323100 3607800 7638900 4370800 5212700 5100100 4685200 4610200 1 1 0 1 1 1 1 1 1 1 1 3565200 6107700 86501 4628200 5332600 3797800 4495300 3527200 3813900 3945500 4546700 3320200 5693600 400950 4813600 5097300 3914100 4582500 3612400 3935800 3836200 4363300 1 1 1 1 1 1 1 1 1 1 1 1313800000 833010000 480810000 6024 783 5615 32213;32214;32215;32216 38490;38491;38492 38492 3 FVAFSGEGQSLR Unmodified 1296.6463 0.64625011 2374 Q92890;Q92890-1 UFD1L Ubiquitin fusion degradation protein 1 homolog yes no 0 0 0 0 By MS/MS 7 0 1 1 53.927 54.647 2 1.1548E-11 17174 20211116_3435_TMUAki_TMT10x_P_F7 167.69 141.84 9189800 16520000 112290 16295000 18541000 23970000 13302000 14494000 14031000 12741000 13999000 8557400 15414000 997520 16754000 17653000 23733000 13790000 15162000 14241000 12516000 13505000 2 2 2 2 2 2 2 2 2 2 2 9189800 16520000 112290 16295000 18541000 23970000 13302000 14494000 14031000 12741000 13999000 8557400 15414000 997520 16754000 17653000 23733000 13790000 15162000 14241000 12516000 13505000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 687490000 687490000 0 6025 2374 5616 32217 38493;38494 38493 2 FVAFSGEGQSLRK Unmodified 1424.7412 0.74121312 2374 Q92890;Q92890-1 UFD1L Ubiquitin fusion degradation protein 1 homolog yes no 0 0 0 1 By MS/MS 2 0 1 1 49.345 49.072 3 3.1439E-05 15232 20211116_3429_TMUAki_TMT10x_P_F2 100.22 70.875 1960300 3058300 78545 3447900 4183600 4648500 2445100 3058200 3079800 2599700 2774100 1825800 2855200 266860 3507900 3972500 4625800 2590800 3175900 3094500 2557900 2685600 1 1 1 1 1 1 1 1 1 1 1 1960300 3058300 78545 3447900 4183600 4648500 2445100 3058200 3079800 2599700 2774100 1825800 2855200 266860 3507900 3972500 4625800 2590800 3175900 3094500 2557900 2685600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 258390000 258390000 0 6026 2374 5617 32218 38495 38495 1 FVANGIESSIRMEVR Oxidation (M) 1722.8723 0.87230365 1947 Q5VST9;Q5VST9-2;Q5VST9-6;Q5VST9-3;Q5VST9-5 OBSCN Obscurin yes no 0 0 1 1 By MS/MS 3 0 3 3 6.3943 6.1621 3 0.026019 1848 20211116_3441_TMUAki_TMT10x_S_F3 45.863 18.001 736790 1329000 7698.5 1172700 934500 847570 934270 723950 709830 740500 928020 686060 1239500 68251 1202500 896320 880730 940730 742800 739690 722530 888470 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 736790 1329000 7698.5 1172700 934500 847570 934270 723950 709830 740500 928020 686060 1239500 68251 1202500 896320 880730 940730 742800 739690 722530 888470 2 2 1 2 2 2 2 2 2 2 2 79210000 0 79210000 6027 1947 5618 32219;32220;32221 38496;38497;38498;38499 38496 2529 4 FVAPEEVLPFTEGDILEK Unmodified 2032.0405 0.040474416 1119 P49770 EIF2B2 Translation initiation factor eIF-2B subunit beta yes yes 0 0 0 0 By MS/MS By MS/MS 3.1 1.64 1 4 2 1 2 5 5 80.12 80.097 2;3 2.4056E-12 28269 20211116_3430_TMUAki_TMT10x_P_F3 133.45 119.62 32521000 52922000 243330 50054000 35438000 45434000 40146000 26158000 26773000 28814000 39029000 30281000 49372000 2373100 51197000 34102000 46137000 40062000 27648000 28257000 28032000 37270000 12 12 7 12 12 12 12 12 12 12 12 17083000 26898000 168080 25621000 14592000 26907000 18502000 14012000 14140000 15100000 19362000 15907000 25094000 1452000 26247000 14095000 27042000 18428000 14930000 14761000 14703000 18517000 7 7 5 7 7 7 7 7 7 7 7 15437000 26024000 75254 24434000 20845000 18526000 21645000 12146000 12633000 13713000 19667000 14374000 24278000 921100 24950000 20007000 19095000 21635000 12718000 13496000 13329000 18754000 5 5 2 5 5 5 5 5 5 5 5 10928000000 5621000000 5307100000 6028 1119 5619 32222;32223;32224;32225;32226;32227;32228;32229;32230;32231 38500;38501;38502;38503;38504;38505;38506;38507;38508;38509;38510;38511 38504 12 FVCAPPSR Unmodified 932.45382 0.45382165 2286 Q8TEM1;Q8TEM1-2 NUP210 Nuclear pore membrane glycoprotein 210 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 35.07 35.494 2 0.028838 7469 20211116_3447_TMUAki_TMT10x_S_F8 63.306 42.824 296250 452270 0 497860 463610 453600 340250 429980 405030 391430 396510 275840 422190 26818 504010 441430 464300 353580 437210 408910 383880 382760 2 2 0 2 2 2 2 2 2 2 2 169590 251990 0 263720 317020 333450 187170 227680 233890 219930 226480 157900 235180 16099 269250 300710 333020 198090 236600 235630 215120 218710 1 1 0 1 1 1 1 1 1 1 1 126660 200280 0 234140 146590 120150 153080 202300 171140 171500 170030 117930 187010 10718 234760 140720 131280 155490 200620 173280 168760 164060 1 1 0 1 1 1 1 1 1 1 1 13347000 7122100 6224800 6029 2286 5620 32232;32233 38512;38513 38513 2 FVDGEWYR Unmodified 1070.4821 0.48214489 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 By MS/MS 5 0 1 1 56.162 56.355 2 0.076049 17222 20211116_3433_TMUAki_TMT10x_P_F5 60.59 43.814 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6030 2048 5621 32234 38514 38514 1 FVDGLMIHSGDPVNYYVDTAVR Oxidation (M) 2483.1791 0.17910994 783 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 1 0 By MS/MS By MS/MS 4.42 1.85 1 1 2 2 2 2 2 6 6 71.071 71.034 3 1.0896E-44 23199 20211116_3433_TMUAki_TMT10x_P_F5 203.71 189.72 67217000 112520000 902100 100090000 79797000 102380000 77874000 77843000 69576000 77610000 82511000 62589000 104950000 5855400 103020000 76498000 103600000 78835000 80377000 71604000 75807000 79195000 23 23 13 23 23 23 23 23 23 23 23 32559000 54307000 625280 47633000 31402000 64152000 38777000 36781000 34428000 37990000 37471000 30319000 50649000 3096800 49311000 30322000 63720000 38813000 38814000 35322000 37053000 36053000 12 12 7 12 12 12 12 12 12 12 12 34657000 58215000 276820 52455000 48395000 38225000 39098000 41062000 35149000 39620000 45040000 32270000 54299000 2758600 53707000 46177000 39883000 40022000 41563000 36281000 38755000 43142000 11 11 6 11 11 11 11 11 11 11 11 34302000000 17503000000 16798000000 6031 783 5622 32235;32236;32237;32238;32239;32240;32241;32242;32243;32244;32245;32246 38515;38516;38517;38518;38519;38520;38521;38522;38523;38524;38525;38526;38527;38528;38529;38530;38531;38532;38533;38534;38535;38536;38537;38538 38520 921 24 FVDGLMIHSGDPVNYYVDTAVR Unmodified 2467.1842 0.18419532 783 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 0 By MS/MS By MS/MS 5.44 1.57 1 2 2 1 2 1 4 5 76.445 76.438 3 1.7378E-35 24273 20211116_3434_TMUAki_TMT10x_P_F6 190.88 178.39 59002000 98314000 502740 93704000 65690000 84844000 72464000 51551000 46984000 54057000 68653000 54938000 91721000 4468600 95787000 63171000 86231000 72361000 54169000 49682000 52692000 65556000 16 16 6 16 16 16 16 16 16 16 16 35460000 57134000 320300 56991000 33321000 58631000 43984000 30177000 25733000 30102000 39842000 33018000 53311000 2345300 58175000 32229000 58989000 43493000 32115000 27479000 29402000 37997000 8 8 2 8 8 8 8 8 8 8 8 23542000 41181000 182440 36713000 32370000 26212000 28480000 21375000 21251000 23956000 28811000 21920000 38409000 2123300 37612000 30943000 27243000 28868000 22054000 22204000 23290000 27559000 8 8 4 8 8 8 8 8 8 8 8 14283000000 8112000000 6171000000 6032 783 5622 32247;32248;32249;32250;32251;32252;32253;32254;32255 38539;38540;38541;38542;38543;38544;38545;38546;38547;38548;38549;38550;38551;38552;38553;38554 38543 16 FVDHVFDEQVIDSLTVK Unmodified 1990.0048 0.004757612 494 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 77.986 77.979 3 5.8634E-11 25871 20211116_3431_TMUAki_TMT10x_P_F4 126.63 113.91 14202000 23937000 170070 20014000 18099000 18003000 17017000 14525000 12328000 13841000 17206000 13225000 22321000 1365000 20664000 17336000 18386000 17172000 14923000 12920000 13546000 16447000 3 3 2 3 3 3 3 3 3 3 3 5570000 8159100 160530 7078500 4678800 8262000 5415400 4939200 4645600 5156200 6361300 5187500 7609300 598920 7315200 4514500 8269100 5430800 5196100 4820600 5026900 6083400 1 1 1 1 1 1 1 1 1 1 1 8632300 15778000 9542.4 12935000 13421000 9740900 11601000 9585500 7682400 8684600 10845000 8037400 14712000 766080 13349000 12822000 10117000 11742000 9726700 8099300 8518900 10364000 2 2 1 2 2 2 2 2 2 2 2 2692800000 846200000 1846600000 6033 494 5623 32256;32257;32258 38555;38556;38557 38555 3 FVDILGLR Unmodified 931.5491 0.54910224 2328 Q8WYA6;Q8WYA6-4;Q8WYA6-3;Q8WYA6-2 CTNNBL1 Beta-catenin-like protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.86 3.09 2 1 2 2 3 4 76.001 76.013 2 0.0021457 26536 20211116_3446_TMUAki_TMT10x_S_F7 113.14 55.577 14079000 22550000 216050 20701000 14969000 24308000 16082000 15467000 14349000 15838000 16973000 13110000 21035000 1338800 21303000 14391000 24342000 16201000 16183000 14766000 15453000 16292000 4 4 3 4 4 4 4 4 4 4 4 10750000 17221000 178920 15673000 10734000 20343000 12100000 11906000 10967000 11985000 12698000 10010000 16063000 1015500 16169000 10335000 20246000 12167000 12533000 11268000 11702000 12196000 3 3 2 3 3 3 3 3 3 3 3 3329200 5329000 37127 5027600 4234700 3965100 3981700 3561500 3381900 3853000 4274700 3100100 4971400 323300 5134400 4056300 4095800 4033400 3650200 3498500 3751000 4096000 1 1 1 1 1 1 1 1 1 1 1 4153600000 2295800000 1857900000 6034 2328 5624 32259;32260;32261;32262;32263;32264;32265 38558;38559;38560;38561 38561 4 FVEGLPINDFSR Unmodified 1392.7038 0.70376498 988 P40925;P40925-3;P40925-2 MDH1 Malate dehydrogenase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 4.75 1.56 2 2 2 4 4 2 8 8 71.231 71.209 2;3 1.0935E-30 23037 20211116_3431_TMUAki_TMT10x_P_F4 270.36 236.17 133220000 223970000 941790 208760000 156230000 219870000 158960000 162590000 155640000 162060000 175230000 124040000 208930000 9808100 214210000 149830000 222010000 160990000 168190000 159170000 158300000 168430000 23 23 10 23 23 23 23 23 23 23 23 76305000 125100000 587450 117630000 84628000 154340000 93284000 90206000 85096000 88924000 96855000 71041000 116710000 5688100 121080000 81314000 153530000 93916000 94914000 87347000 86901000 93069000 12 12 5 12 12 12 12 12 12 12 12 56919000 98866000 354340 91128000 71605000 65521000 65675000 72385000 70539000 73133000 78374000 52998000 92224000 4120000 93129000 68514000 68483000 67077000 73272000 71826000 71395000 75362000 11 11 5 11 11 11 11 11 11 11 11 28707000000 14349000000 14358000000 6035 988 5625 32266;32267;32268;32269;32270;32271;32272;32273;32274;32275;32276;32277;32278;32279;32280;32281 38562;38563;38564;38565;38566;38567;38568;38569;38570;38571;38572;38573;38574;38575;38576;38577;38578;38579;38580;38581;38582;38583;38584;38585 38565 24 FVELVHQQK Unmodified 1126.6135 0.61349341 2258 Q8NI27 THOC2 THO complex subunit 2 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 43.365 43.913 3 0.013841 13360 20211116_3446_TMUAki_TMT10x_S_F7 58.433 35.604 2789300 4437600 0 4509700 2708900 2384100 3201800 2244500 2508100 2527800 3339600 2596400 4141100 147920 4563800 2604400 2556800 3200400 2297600 2611400 2457100 3195800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2789300 4437600 0 4509700 2708900 2384100 3201800 2244500 2508100 2527800 3339600 2596400 4141100 147920 4563800 2604400 2556800 3200400 2297600 2611400 2457100 3195800 1 1 0 1 1 1 1 1 1 1 1 52294000 0 52294000 6036 2258 5626 32282;32283 38586;38587 38587 2 FVESVDEYQFVER Unmodified 1645.7624 0.76240208 1628 Q13405 MRPL49 39S ribosomal protein L49, mitochondrial yes yes 0 0 0 0 By MS/MS 2 0 1 1 66.383 66.072 2 3.4476E-12 22172 20211116_3429_TMUAki_TMT10x_P_F2 130.56 106.58 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6037 1628 5627 32284 38588 38588 1 FVETPGQK Unmodified 904.46543 0.46543219 509 P05455 SSB Lupus La protein yes yes 0 0 0 0 By MS/MS 5 0 1 1 40.421 40.544 2 0.019057 9781 20211116_3444_TMUAki_TMT10x_S_F5 73.26 61.355 1698300 3066600 0 2664400 2000200 1621800 2043200 2071300 2602200 2173700 2585400 1581200 2859900 129430 2731000 1918000 1726600 2087500 2086400 2622200 2118700 2494500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1698300 3066600 0 2664400 2000200 1621800 2043200 2071300 2602200 2173700 2585400 1581200 2859900 129430 2731000 1918000 1726600 2087500 2086400 2622200 2118700 2494500 1 1 0 1 1 1 1 1 1 1 1 56520000 0 56520000 6038 509 5628 32285 38589 38589 1 FVFDIFQFAK Unmodified 1260.6543 0.6542956 1841 Q16222;Q16222-2;Q16222-3 UAP1 UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase yes no 0 0 0 0 By MS/MS By matching 4 0 2 1 1 82.024 82.024 2 0.00075886 27558 20211116_3431_TMUAki_TMT10x_P_F4 100.02 69.763 2857500 4611300 0 4260100 2712500 4779500 3105500 2109600 2363400 2682700 2935900 2660100 4301500 173410 4378600 2606800 4777000 3106500 2296800 2457100 2596500 2814400 2 2 0 2 2 2 2 2 2 2 2 2857500 4611300 0 4260100 2712500 4779500 3105500 2109600 2363400 2682700 2935900 2660100 4301500 173410 4378600 2606800 4777000 3106500 2296800 2457100 2596500 2814400 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 212060000 113140000 98916000 6039 1841 5629 32286;32287 38590;38591 38591 2 FVFDRPLPVSR Unmodified 1331.735 0.73500553 806 P25786;P25786-2 PSMA1 Proteasome subunit alpha type-1 yes no 0 0 0 1 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 3 4 53.515 53.344 3 1.8701E-16 16920 20211116_3429_TMUAki_TMT10x_P_F2 213.84 171.56 13237000 20520000 155440 21903000 15153000 20971000 13305000 16080000 16305000 15677000 16559000 12325000 19152000 1232200 22233000 14490000 21312000 13685000 16584000 16465000 15327000 15966000 6 6 5 6 6 6 6 6 6 6 6 7289300 10910000 92977 11500000 9689100 15156000 8215800 8602500 8776100 8427300 8962700 6787500 10182000 687700 11745000 9256500 15067000 8428000 9071900 8910300 8237800 8640300 3 3 2 3 3 3 3 3 3 3 3 5947300 9610000 62467 10403000 5464300 5815700 5089000 7477300 7529100 7249300 7595800 5538000 8970100 544520 10488000 5233700 6244900 5257100 7511700 7555100 7089400 7325300 3 3 3 3 3 3 3 3 3 3 3 3679400000 1697000000 1982400000 6040 806 5630 32288;32289;32290;32291;32292;32293;32294 38592;38593;38594;38595;38596;38597 38593 6 FVFHQEQVYCPDCAK Unmodified 1926.8393 0.83928896 1659 Q13642-1;Q13642-5;Q13642-4 FHL1 Four and a half LIM domains protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.4 0.49 3 2 2 3 51.226 51.485 3;4 3.6887E-10 14411 20211116_3445_TMUAki_TMT10x_S_F6 136.33 124.81 21915000 37208000 372220 39320000 32001000 30359000 21696000 29884000 24648000 25050000 30275000 20407000 34727000 2272200 39830000 30445000 31470000 22637000 30264000 25146000 24664000 29031000 7 7 6 7 7 7 7 7 7 7 7 7716600 12844000 98169 13417000 16255000 18659000 10815000 10574000 9109500 9199900 10314000 7185400 11987000 817980 13726000 15453000 18503000 11202000 11118000 9384700 9041700 9911800 3 3 2 3 3 3 3 3 3 3 3 14198000 24364000 274050 25902000 15746000 11700000 10881000 19311000 15539000 15850000 19962000 13222000 22740000 1454200 26104000 14992000 12967000 11435000 19146000 15761000 15622000 19120000 4 4 4 4 4 4 4 4 4 4 4 2685300000 1616100000 1069200000 6041 1659 5631 32295;32296;32297;32298;32299 38598;38599;38600;38601;38602;38603;38604;38605 38601 8 FVFSLVDAMNGK Oxidation (M) 1342.6591 0.65912298 989 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 3.75 3.07 3 2 1 2 4 4 75.944 75.898 2;3 2.732E-06 24845 20211116_3440_TMUAki_TMT10x_S_F2 113.47 87.813 51897000 82771000 325930 76895000 56759000 99107000 64061000 66744000 64925000 72628000 69336000 48320000 77212000 4246400 79193000 54598000 98866000 64625000 69670000 66169000 70690000 66749000 14 14 5 14 14 14 14 14 14 14 14 33716000 53018000 122030 48641000 36127000 74479000 40607000 42342000 41696000 46420000 43916000 31392000 49455000 2741200 50317000 34747000 73558000 40989000 44794000 42449000 45168000 42296000 8 8 3 8 8 8 8 8 8 8 8 18181000 29753000 203900 28255000 20631000 24628000 23454000 24402000 23230000 26209000 25419000 16928000 27757000 1505100 28876000 19851000 25308000 23636000 24876000 23720000 25522000 24453000 6 6 2 6 6 6 6 6 6 6 6 5029400000 3466200000 1563200000 6042 989 5632 32300;32301;32302;32303;32304;32305;32306;32307 38606;38607;38608;38609;38610;38611;38612;38613;38614;38615;38616;38617;38618;38619;38620 38617 1270 15 FVFSLVDAMNGK Unmodified 1326.6642 0.66420836 989 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 2 4 3 3 80.093 80.046 2;3 3.246E-73 29241 20211116_3441_TMUAki_TMT10x_S_F3 340.33 286.36 55034000 80326000 82066 92216000 53033000 45413000 62174000 16665000 12782000 23297000 49855000 51232000 74997000 3367200 92536000 51004000 48505000 61059000 18593000 16480000 22479000 46945000 8 8 1 8 8 8 8 8 8 8 8 25748000 35361000 82066 41606000 22776000 26174000 26000000 8222800 6176000 11168000 22353000 23970000 33019000 1611500 41773000 21889000 27213000 25591000 9354500 7724500 10786000 21063000 4 4 1 4 4 4 4 4 4 4 4 29286000 44965000 0 50610000 30257000 19239000 36174000 8442100 6605500 12128000 27501000 27262000 41978000 1755700 50763000 29116000 21292000 35468000 9238600 8755300 11693000 25883000 4 4 0 4 4 4 4 4 4 4 4 10451000000 4472800000 5978200000 6043 989 5632 32308;32309;32310;32311;32312;32313 38621;38622;38623;38624;38625;38626;38627;38628 38628 8 FVGGSGQVSER Unmodified 1121.5465 0.54653606 757 P21397;P21397-2;P27338;P27338-2 MAOA;MAOB Amine oxidase [flavin-containing] A;Amine oxidase [flavin-containing] B yes no 0 0 0 0 By MS/MS 5 0 1 1 32.851 33.015 2 0.0093336 6726 20211116_3444_TMUAki_TMT10x_S_F5 63.624 24.082 115330 185860 1309.3 204300 125450 91489 127910 91631 109460 100250 137960 107390 173500 10923 205430 120430 100160 129040 93415 113170 97556 132200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 115330 185860 1309.3 204300 125450 91489 127910 91631 109460 100250 137960 107390 173500 10923 205430 120430 100160 129040 93415 113170 97556 132200 1 1 1 1 1 1 1 1 1 1 1 3641700 0 3641700 6044 757 5633 32314 38629 38629 1 FVGIKDEDQLEAFLK Unmodified 1750.9142 0.91415169 2604 Q99757 TXN2 Thioredoxin, mitochondrial yes yes 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 77.344 77.36 3 1.7355E-09 25055 20211116_3445_TMUAki_TMT10x_S_F6 125.52 100.2 15246000 26370000 52068 24580000 20963000 14611000 19293000 8899000 8874600 9842500 16849000 14196000 24600000 1392600 25053000 20061000 15371000 19335000 9364400 9767300 9573800 16007000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15246000 26370000 52068 24580000 20963000 14611000 19293000 8899000 8874600 9842500 16849000 14196000 24600000 1392600 25053000 20061000 15371000 19335000 9364400 9767300 9573800 16007000 2 2 2 2 2 2 2 2 2 2 2 1620000000 0 1620000000 6045 2604 5634 32315;32316 38630;38631 38630 2 FVGIKDEDQLEAFLKK Unmodified 1879.0091 0.0091147084 2604 Q99757 TXN2 Thioredoxin, mitochondrial yes yes 0 0 0 2 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 73.588 73.639 4 5.4493E-07 25055 20211116_3435_TMUAki_TMT10x_P_F7 102.58 87.649 50575000 84868000 405520 67822000 55263000 79926000 60231000 46642000 41316000 45653000 61254000 47093000 79128000 4558400 70574000 53133000 79929000 60250000 49072000 43567000 44628000 58472000 5 5 4 5 5 5 5 5 5 5 5 31076000 51512000 101690 41545000 28255000 54796000 36414000 29256000 25561000 28700000 37507000 28935000 48029000 2553500 43284000 27299000 54431000 36174000 31018000 26903000 28053000 35811000 3 3 2 3 3 3 3 3 3 3 3 19499000 33356000 303840 26277000 27008000 25130000 23817000 17386000 15754000 16953000 23748000 18158000 31098000 2004900 27290000 25835000 25497000 24076000 18055000 16664000 16575000 22661000 2 2 2 2 2 2 2 2 2 2 2 2056900000 1073300000 983680000 6046 2604 5635 32317;32318;32319 38632;38633;38634;38635;38636 38632 5 FVGQDVEGER Unmodified 1134.5306 0.53055165 709 P17812;P17812-2 CTPS1 CTP synthase 1 yes no 0 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 37.651 37.598 2 1.391E-05 9020 20211116_3440_TMUAki_TMT10x_S_F2 139.32 108.52 1192200 1927600 16828 2216800 2858300 2599400 1743500 1557700 1936300 1461900 1808700 1110200 1799700 137860 2246800 2713700 2601100 1832700 1633400 1956900 1431700 1748800 2 2 2 2 2 2 2 2 2 2 2 887340 1454700 13668 1704200 2599100 2338700 1373500 1200000 1470300 1142700 1343300 826300 1358300 110280 1730500 2462100 2317800 1460300 1275800 1487000 1118400 1299700 1 1 1 1 1 1 1 1 1 1 1 304850 472900 3159.3 512590 259250 260630 369950 357660 466070 319160 465440 283870 441420 27580 516350 251550 283230 372440 357600 469910 313300 449020 1 1 1 1 1 1 1 1 1 1 1 102880000 62434000 40444000 6047 709 5636 32320;32321;32322;32323 38637;38638;38639 38639 3 FVHFIDAPSLALIMPIVQR Oxidation (M) 2182.1973 0.1972666 2350 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 1 0 By MS/MS By matching 4 0 2 1 1 78.708 78.697 3 0.018633 26203 20211116_3431_TMUAki_TMT10x_P_F4 42.059 24.657 2860500 4750700 26881 4096100 2745800 5203700 3518500 2751700 2354600 2727100 3855400 2663600 4430500 260600 4241500 2653900 5177800 3492500 2920800 2499600 2664400 3672700 1 1 1 1 1 1 1 1 1 1 1 2860500 4750700 26881 4096100 2745800 5203700 3518500 2751700 2354600 2727100 3855400 2663600 4430500 260600 4241500 2653900 5177800 3492500 2920800 2499600 2664400 3672700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1151200000 564760000 586390000 6048 2350 5637 32324;32325 38640 38640 2696 1 FVHSENQHLVSPEALDFLDK Unmodified 2324.1437 0.14371071 1419 P68400;Q8NEV1;P68400-2 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 0 0 0 0 By MS/MS By MS/MS 5.29 1.03 2 2 2 1 4 3 65.099 65.199 4 1.7222E-09 21467 20211116_3435_TMUAki_TMT10x_P_F7 117.55 102.29 25935000 43255000 558040 38361000 24237000 45020000 22009000 29690000 23595000 29249000 29103000 24152000 40344000 2610300 39221000 23215000 45108000 22485000 30948000 24126000 28584000 27904000 8 8 7 7 8 7 7 7 7 7 8 16371000 27008000 451310 26961000 16278000 37286000 14913000 21940000 16266000 20494000 19825000 15246000 25201000 1776500 27663000 15601000 37003000 15240000 23039000 16615000 20075000 19014000 5 5 5 5 5 5 5 5 5 5 5 9564200 16248000 106720 11399000 7959300 7733600 7095900 7750000 7328900 8755000 9277800 8905700 15143000 833760 11558000 7614100 8104900 7245000 7909000 7510800 8509200 8889600 3 3 2 2 3 2 2 2 2 2 3 6024200000 3466100000 2558100000 6049 1419 5638 32326;32327;32328;32329;32330;32331;32332 38641;38642;38643;38644;38645;38646;38647;38648 38645 8 FVIATSTK Unmodified 865.49092 0.49091866 1499 Q02878 RPL6 60S ribosomal protein L6 yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 49.155 49.049 2 0.00043538 13738 20211116_3436_TMUAki_TMT10x_P_F8 148.38 124.83 91911000 139890000 682320 136160000 109110000 106930000 92137000 79715000 75330000 71262000 101550000 85581000 130520000 8250400 138740000 104220000 110120000 93826000 82169000 78302000 69946000 97152000 6 6 5 6 6 6 6 6 6 6 6 51540000 75678000 477230 75125000 68116000 75803000 54390000 45645000 42376000 40145000 57616000 47992000 70613000 4949900 76689000 64997000 76504000 55516000 47766000 44177000 39434000 55108000 3 3 3 3 3 3 3 3 3 3 3 40371000 64216000 205090 61040000 40996000 31122000 37747000 34070000 32954000 31117000 43936000 37589000 59908000 3300500 62048000 39223000 33617000 38310000 34403000 34124000 30512000 42043000 3 3 2 3 3 3 3 3 3 3 3 3786200000 2430300000 1355900000 6050 1499 5639 32333;32334;32335;32336;32337;32338 38649;38650;38651;38652;38653;38654 38651 6 FVIEENLHCIIK Unmodified 1513.7963 0.79628516 1554 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.71 1.03 1 2 2 2 4 3 64.294 64.489 3 8.685E-08 19412 20211116_3434_TMUAki_TMT10x_P_F6 135.1 110.24 79730000 135850000 1677300 133800000 99604000 125020000 91659000 96068000 82913000 91889000 105580000 74248000 126750000 8393300 136510000 95403000 127250000 93118000 99011000 85537000 89915000 101150000 11 11 9 11 11 11 11 11 11 11 11 36381000 58706000 539230 58483000 47256000 77877000 46818000 45307000 37992000 41282000 45894000 33878000 54778000 3612700 59968000 45329000 77408000 47239000 47588000 39317000 40484000 44028000 5 5 3 5 5 5 5 5 5 5 5 43348000 77144000 1138000 75319000 52348000 47143000 44841000 50761000 44921000 50607000 59684000 40370000 71976000 4780500 76545000 50074000 49845000 45879000 51423000 46220000 49431000 57118000 6 6 6 6 6 6 6 6 6 6 6 6413900000 3605700000 2808200000 6051 1554 5640 32339;32340;32341;32342;32343;32344;32345 38655;38656;38657;38658;38659;38660;38661;38662;38663;38664;38665 38656 11 FVIGGPQGDAGLTGR Unmodified 1443.747 0.74702678 885 P31153;P31153-2 MAT2A S-adenosylmethionine synthase isoform type-2 yes no 0 0 0 0 By MS/MS By MS/MS 6.55 0.988 2 3 4 2 6 5 56.402 56.694 2;3 2.5649E-72 18011 20211116_3435_TMUAki_TMT10x_P_F7 328.7 281.13 19714000 33532000 135290 35993000 27645000 31624000 21514000 27735000 27840000 25775000 29718000 18356000 31298000 1723600 36479000 26352000 32398000 22339000 28336000 28112000 25254000 28610000 5 5 3 5 5 5 5 5 5 5 5 7673400 12308000 70170 13809000 14898000 19137000 10237000 10876000 10652000 9424000 10934000 7145100 11491000 786610 14061000 14171000 18981000 10641000 11431000 10829000 9263800 10539000 2 2 1 2 2 2 2 2 2 2 2 12041000 21224000 65116 22183000 12747000 12487000 11277000 16859000 17188000 16351000 18784000 11211000 19807000 937040 22418000 12181000 13417000 11699000 16905000 17284000 15990000 18071000 3 3 2 3 3 3 3 3 3 3 3 6116900000 3018700000 3098200000 6052 885 5641 32346;32347;32348;32349;32350;32351;32352;32353;32354;32355;32356 38666;38667;38668;38669;38670;38671;38672;38673;38674;38675 38668 10 FVIGGPQGDAGLTGRK Unmodified 1571.842 0.8419898 885 P31153;P31153-2 MAT2A S-adenosylmethionine synthase isoform type-2 yes no 0 0 0 1 By MS/MS By MS/MS 2.8 2.64 2 2 1 2 3 49.992 49.841 3 1.3346E-35 14217 20211116_3440_TMUAki_TMT10x_S_F2 209.13 169.07 29347000 50322000 738710 54721000 51748000 57159000 34364000 41470000 42640000 36882000 42886000 27330000 46972000 3424800 55550000 49226000 57727000 36022000 42819000 43026000 36210000 41363000 8 8 7 8 8 8 8 8 8 8 8 19539000 32790000 320150 35679000 43089000 48268000 26635000 27101000 27625000 24036000 28191000 18195000 30607000 2237700 36383000 40920000 47920000 27908000 28531000 28081000 23601000 27178000 5 5 4 5 5 5 5 5 5 5 5 9807500 17532000 418560 19041000 8659700 8891600 7729200 14370000 15015000 12847000 14694000 9134900 16365000 1187100 19167000 8305300 9807400 8114200 14288000 14945000 12609000 14185000 3 3 3 3 3 3 3 3 3 3 3 2317000000 1437800000 879260000 6053 885 5642 32357;32358;32359;32360;32361 38676;38677;38678;38679;38680;38681;38682;38683 38682 8 FVIHCHIPQWGSDKCEEQLEETIK Unmodified 2982.4004 0.40041246 3051 Q9P0M6 H2AFY2 Core histone macro-H2A.2 yes yes 0 0 0 1 By MS/MS 6 1.41 1 1 1 1 1 5 60.495 60.743 5 2.6349E-05 17905 20211116_3434_TMUAki_TMT10x_P_F6 75.358 51.441 18667000 30029000 502810 29920000 21041000 35091000 24626000 20524000 17209000 18446000 23208000 17384000 28020000 2049500 30609000 20296000 35102000 24562000 21540000 18044000 18101000 22202000 5 5 5 5 5 5 5 5 5 5 5 18667000 30029000 502810 29920000 21041000 35091000 24626000 20524000 17209000 18446000 23208000 17384000 28020000 2049500 30609000 20296000 35102000 24562000 21540000 18044000 18101000 22202000 5 5 5 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4816600000 4816600000 0 6054 3051 5643 32362;32363;32364;32365;32366 38684;38685;38686;38687;38688 38687 5 FVIHCNSPVWGADKCEELLEK Unmodified 2530.1985 0.19846517 327 O75367;O75367-2;O75367-3 H2AFY Core histone macro-H2A.1 yes no 0 0 0 1 By MS/MS By MS/MS 6.38 1.32 1 1 2 2 2 5 3 63.547 63.739 4 1.0197E-20 20847 20211116_3435_TMUAki_TMT10x_P_F7 160.13 143.56 107330000 169680000 1037500 183780000 128300000 147080000 121720000 63101000 51451000 79394000 118140000 99944000 158380000 9887700 185940000 122900000 150210000 121630000 68882000 57783000 76869000 111900000 12 12 9 12 12 12 12 12 12 12 12 69796000 106160000 859870 115960000 80667000 114800000 85111000 40826000 34850000 51544000 74069000 64993000 99092000 6631500 117580000 77504000 115360000 84544000 45563000 39045000 49899000 70238000 8 8 7 8 8 8 8 8 8 8 8 37538000 63519000 177630 67823000 47636000 32278000 36607000 22275000 16600000 27850000 44067000 34951000 59286000 3256200 68355000 45398000 34851000 37090000 23319000 18738000 26970000 41660000 4 4 2 4 4 4 4 4 4 4 4 23453000000 14693000000 8759900000 6055 327 5644 32367;32368;32369;32370;32371;32372;32373;32374 38689;38690;38691;38692;38693;38694;38695;38696;38697;38698;38699;38700 38694 12 FVIKPIDK Unmodified 958.58515 0.5851534 682;926 P15311;P26038;P35241-4;P35241;P35241-5 EZR;MSN;RDX Ezrin;Moesin;Radixin no no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 52.869 52.777 3 0.0041997 15428 20211116_3440_TMUAki_TMT10x_S_F2 81.95 28.479 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6056 682;926 5645 32375;32376 38701;38702 38702 2 FVIKPIDKK Unmodified 1086.6801 0.68011642 682;926 P15311;P26038;P35241-4;P35241;P35241-5 EZR;MSN;RDX Ezrin;Moesin;Radixin no no 0 0 0 2 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 46.868 46.961 4 0.030233 13529 20211116_3442_TMUAki_TMT10x_S_F4 58.37 12.212 2556500 4075800 45869 3610800 3564600 3995600 3200700 3175900 3341900 3296000 3471500 2380700 3801400 268820 3722200 3411500 4028300 3270000 3274000 3398200 3214100 3344800 2 2 2 2 2 2 2 2 2 2 2 866900 1302900 12242 1196200 1670200 1983100 1206400 1178300 1222500 1197000 1216600 807260 1215300 94533 1239600 1590600 1953600 1248400 1239100 1242700 1168300 1173800 1 1 1 1 1 1 1 1 1 1 1 1689600 2772900 33627 2414500 1894300 2012500 1994300 1997600 2119400 2099000 2254900 1573500 2586100 174290 2482500 1820900 2074700 2021600 2034800 2155500 2045800 2171000 1 1 1 1 1 1 1 1 1 1 1 190290000 56289000 134000000 6057 682;926 5646 32377;32378 38703;38704 38704 2 FVINYDYPNSSEDYIHR Unmodified 2130.9647 0.96468371 710 P17844;P17844-2 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 0 By MS/MS By MS/MS 6.19 1.51 1 2 2 2 6 3 4 12 60.567 60.676 3 2.6957E-29 18676 20211116_3431_TMUAki_TMT10x_P_F4 182.1 169.58 43587000 74541000 551020 74387000 50254000 61963000 49237000 47486000 47457000 47622000 54819000 40586000 69554000 3961200 75712000 48177000 63565000 49941000 49016000 48619000 46505000 52654000 23 23 11 23 23 23 23 23 23 23 23 17595000 29914000 188780 30889000 22004000 37646000 21923000 20405000 18986000 19141000 21459000 16383000 27917000 1645100 31544000 21105000 37547000 22151000 21579000 19532000 18746000 20624000 6 6 3 6 6 6 6 6 6 6 6 25992000 44627000 362240 43497000 28250000 24317000 27314000 27081000 28471000 28481000 33360000 24203000 41637000 2316200 44168000 27072000 26018000 27790000 27437000 29087000 27758000 32029000 17 17 8 17 17 17 17 17 17 17 17 18608000000 9517700000 9089900000 6058 710 5647 32379;32380;32381;32382;32383;32384;32385;32386;32387;32388;32389;32390;32391;32392;32393;32394 38705;38706;38707;38708;38709;38710;38711;38712;38713;38714;38715;38716;38717;38718;38719;38720;38721;38722;38723;38724;38725;38726;38727;38728;38729;38730 38706 26 FVINYDYPNSSEDYVHR Unmodified 2116.949 0.94903365 2368 Q92841;Q92841-3;Q92841-1;Q92841-2 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 0 0 By MS/MS By MS/MS 4.71 1.03 1 2 2 2 4 3 57.832 57.872 3 8.0004E-22 16635 20211116_3434_TMUAki_TMT10x_P_F6 171.08 161.83 66901000 107500000 202520 118570000 90815000 112350000 74465000 91424000 91286000 88925000 91133000 62283000 100350000 3582200 120090000 86597000 114370000 76908000 93935000 92126000 86952000 87917000 11 11 4 11 11 11 11 11 11 11 11 33531000 51291000 105660 60536000 59765000 81884000 46691000 45634000 44604000 44205000 44744000 31212000 47895000 2036300 61422000 56904000 81287000 47980000 48184000 45473000 43232000 43159000 6 6 2 6 6 6 6 6 6 6 6 33370000 56209000 96859 58038000 31050000 30464000 27774000 45790000 46682000 44720000 46388000 31071000 52456000 1545900 58667000 29692000 33080000 28929000 45750000 46653000 43720000 44758000 5 5 2 5 5 5 5 5 5 5 5 10305000000 5924400000 4380800000 6059 2368 5648 32395;32396;32397;32398;32399;32400;32401 38731;38732;38733;38734;38735;38736;38737;38738;38739;38740;38741 38735 11 FVKEPAFEDITLESER Unmodified 1908.9469 0.94690838 332 O75400;O75400-2;O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 0 0 0 1 By MS/MS By MS/MS 3.78 1.31 2 2 2 2 1 4 5 63.824 63.701 3 2.253E-21 20446 20211116_3442_TMUAki_TMT10x_S_F4 171.72 141.83 66760000 114010000 419440 97479000 88923000 118470000 84596000 95303000 85365000 91963000 94263000 62159000 106320000 5740800 100930000 85148000 118870000 86060000 97966000 87126000 89954000 90657000 13 13 7 13 13 13 13 13 13 13 13 34452000 57583000 217810 50210000 44946000 79581000 49002000 48187000 43504000 46506000 49060000 32079000 53703000 3005400 52182000 43199000 78555000 49322000 50528000 44695000 45490000 47154000 7 7 5 7 7 7 7 7 7 7 7 32307000 56430000 201620 47270000 43977000 38885000 35595000 47115000 41861000 45457000 45203000 30081000 52621000 2735500 48745000 41950000 40316000 36738000 47439000 42431000 44464000 43502000 6 6 2 6 6 6 6 6 6 6 6 6386800000 3836800000 2550100000 6060 332 5649 32402;32403;32404;32405;32406;32407;32408;32409;32410 38742;38743;38744;38745;38746;38747;38748;38749;38750;38751;38752;38753;38754;38755;38756 38752 15 FVKQDQVCIAR Unmodified 1362.7078 0.70780451 681 P15170-3;P15170-2;P15170;Q8IYD1 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 40.047 40.282 3 0.0021829 9604 20211116_3447_TMUAki_TMT10x_S_F8 70.089 47.891 1801000 3037300 27416 2509100 5447100 4962800 3189400 3203300 3916200 2635400 2775000 1677100 2832100 225930 2633700 5167800 4864900 3375700 3328700 3911800 2597300 2712300 1 1 1 1 1 1 1 1 1 1 1 1801000 3037300 27416 2509100 5447100 4962800 3189400 3203300 3916200 2635400 2775000 1677100 2832100 225930 2633700 5167800 4864900 3375700 3328700 3911800 2597300 2712300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 130290000 130290000 0 6061 681 5650 32411;32412 38757;38758 38758 2 FVLCPECENPETDLHVNPK Unmodified 2297.0457 0.045652924 1231 P55010 EIF5 Eukaryotic translation initiation factor 5 yes yes 0 0 0 0 By MS/MS By MS/MS 4.43 0.495 4 3 2 5 60.517 60.552 3;4 1.7177E-12 19204 20211116_3442_TMUAki_TMT10x_S_F4 131.45 117.86 23582000 42623000 439980 40500000 35501000 41645000 31164000 33184000 29972000 33589000 35401000 21959000 39764000 2287500 41484000 33942000 42164000 31801000 34178000 30736000 32788000 33982000 8 8 5 8 8 8 8 8 8 8 8 9264200 17686000 250420 15333000 17431000 25311000 15733000 13377000 12919000 14081000 14237000 8626100 16494000 907190 15958000 16672000 24902000 15960000 14224000 13313000 13723000 13693000 3 3 1 3 3 3 3 3 3 3 3 14318000 24938000 189560 25167000 18070000 16333000 15431000 19807000 17053000 19508000 21164000 13333000 23270000 1380300 25526000 17269000 17262000 15841000 19954000 17423000 19065000 20289000 5 5 4 5 5 5 5 5 5 5 5 4762600000 2316500000 2446100000 6062 1231 5651 32413;32414;32415;32416;32417;32418;32419 38759;38760;38761;38762;38763;38764;38765;38766;38767 38763 9 FVLDHEDGLNLNEDLENFLQK Unmodified 2501.2074 0.20743318 1741 Q14980;Q14980-2;Q14980-4;Q14980-3;Q14980-5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 79.808 79.781 3 2.2856E-14 27659 20211116_3429_TMUAki_TMT10x_P_F2 135.79 122.47 12868000 19538000 0 20684000 13695000 17661000 16412000 10584000 9797800 10100000 14912000 11981000 18235000 944320 20975000 13191000 18019000 16301000 11103000 10439000 9884400 14227000 3 3 0 3 3 3 3 3 3 3 3 10108000 14991000 0 16079000 9773600 15061000 12541000 8160900 7786800 7731400 11312000 9410800 13992000 704770 16312000 9432600 15251000 12429000 8632800 8254900 7568500 10803000 2 2 0 2 2 2 2 2 2 2 2 2760000 4546900 0 4604400 3921100 2599900 3871100 2422700 2011100 2368900 3599900 2569800 4242900 239550 4663200 3758200 2768300 3871600 2470600 2183700 2315800 3423500 1 1 0 1 1 1 1 1 1 1 1 2202700000 1576300000 626430000 6063 1741 5652 32420;32421;32422 38768;38769;38770;38771 38768 4 FVLHAVQLVK Unmodified 1152.7019 0.70191449 848 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.75 0.433 1 3 3 1 59.965 60.11 3 3.7002E-09 17633 20211116_3444_TMUAki_TMT10x_S_F5 135.79 116.69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6064 848 5653 32423;32424;32425;32426 38772;38773;38774;38775 38775 4 FVLNLIK Unmodified 845.53747 0.53747492 2280 Q8TDN6 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 3 1 2 75.492 75.509 2 0.0096673 25086 20211116_3433_TMUAki_TMT10x_P_F5 99.171 61.795 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6065 2280 5654 32427;32428;32429 38776;38777;38778 38776 3 FVLSGANIMCPGLTSPGAK Oxidation (M) 1934.9594 0.9594041 3168 Q9ULC4;Q9ULC4-2;Q9ULC4-3 MCTS1 Malignant T-cell-amplified sequence 1 yes no 0 0 1 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 68.771 68.314 3 2.4562E-08 24609 20211116_3441_TMUAki_TMT10x_S_F3 102.69 91.835 3467200 5485300 0 5059200 4024000 3771700 3724400 3754600 3546600 4067400 4417900 3227900 5116800 238190 5172100 3847100 3921400 3788000 3827600 3646700 3959500 4234800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3467200 5485300 0 5059200 4024000 3771700 3724400 3754600 3546600 4067400 4417900 3227900 5116800 238190 5172100 3847100 3921400 3788000 3827600 3646700 3959500 4234800 1 1 0 1 1 1 1 1 1 1 1 680300000 0 680300000 6066 3168 5655 32430;32431;32432 38779;38780;38781 38781 3173 3 FVLSQAKDEL Unmodified 1148.6077 0.60773933 2227 Q8NBS9;Q8NBS9-2 TXNDC5 Thioredoxin domain-containing protein 5 yes no 0 0 0 1 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 64.655 64.718 2 0.0041435 20914 20211116_3442_TMUAki_TMT10x_S_F4 81.163 20.686 31309000 51795000 46649 55033000 38592000 43199000 32379000 34706000 34646000 31192000 39871000 29152000 48342000 2697600 55737000 36847000 44547000 33239000 35610000 35333000 30608000 38300000 4 4 2 4 4 4 4 4 4 4 4 14592000 22572000 1421.3 24646000 20033000 27556000 17425000 14818000 15729000 13857000 17099000 13587000 21070000 1248700 25040000 19141000 27606000 17758000 15680000 16124000 13573000 16452000 2 2 1 2 2 2 2 2 2 2 2 16716000 29223000 45227 30388000 18559000 15643000 14955000 19888000 18917000 17335000 22772000 15565000 27272000 1448900 30698000 17707000 16941000 15480000 19930000 19209000 17035000 21848000 2 2 1 2 2 2 2 2 2 2 2 3169600000 1285000000 1884500000 6067 2227 5656 32433;32434;32435;32436;32437 38782;38783;38784;38785 38784 4 FVLSSGK Unmodified 736.41194 0.41194006 832 P27797 CALR Calreticulin yes yes 0 0 0 0 By MS/MS By MS/MS 3 2.92 2 1 1 1 3 47.544 47.437 2 0.006242 12955 20211116_3428_TMUAki_TMT10x_P_F1 104.45 39.644 27126000 44913000 417620 42881000 41222000 42410000 34425000 29367000 28721000 27672000 36690000 25260000 41901000 2835500 43882000 39380000 42940000 35098000 30466000 29751000 27095000 35147000 5 5 5 5 5 5 5 5 5 5 5 16126000 26280000 333310 24806000 30754000 32659000 23558000 17601000 17140000 16400000 21957000 15017000 24516000 1852500 25528000 29327000 32448000 24074000 18619000 17889000 16067000 21032000 3 3 3 3 3 3 3 3 3 3 3 11000000 18633000 84308 18075000 10468000 9751000 10867000 11766000 11581000 11271000 14733000 10242000 17385000 983080 18354000 10052000 10492000 11024000 11847000 11862000 11029000 14115000 2 2 2 2 2 2 2 2 2 2 2 578050000 369730000 208320000 6068 832 5657 32438;32439;32440;32441 38786;38787;38788;38789;38790;38791 38787 6 FVLVHPDVK Unmodified 1052.6019 0.6018661 2740 Q9BZJ0;Q9BZJ0-2;Q9BZJ0-3 CRNKL1 Crooked neck-like protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 49.355 50.005 3 0.001376 13612 20211116_3447_TMUAki_TMT10x_S_F8 77.355 60.579 3007100 4237200 28555 4570200 5258100 6323600 3346800 3986400 3515600 3591300 3869700 2800100 3955000 307450 4665100 4995400 6281400 3500000 4159200 3581700 3523700 3722000 1 1 1 1 1 1 1 1 1 1 1 3007100 4237200 28555 4570200 5258100 6323600 3346800 3986400 3515600 3591300 3869700 2800100 3955000 307450 4665100 4995400 6281400 3500000 4159200 3581700 3523700 3722000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 304550000 304550000 0 6069 2740 5658 32442;32443;32444 38792;38793;38794 38794 3 FVMEVEVDGQK Oxidation (M) 1295.6068 0.60675306 1576;2556 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3;Q96SI9;Q96SI9-2 ILF3;STRBP Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein no no 0 0 1 0 By MS/MS By MS/MS 3.09 0.793 3 4 4 5 6 52.072 51.882 2;3 1.2541E-11 15573 20211116_3442_TMUAki_TMT10x_S_F4 129.89 110.76 24986000 39990000 154570 39969000 37195000 42254000 30710000 36712000 33124000 32657000 39026000 23265000 37314000 2237100 40811000 35501000 42781000 31565000 37484000 33802000 32062000 37464000 8 8 4 8 8 8 8 8 8 8 8 15202000 23526000 97913 23794000 25045000 32434000 20301000 20870000 19141000 18784000 22899000 14154000 21953000 1397800 24384000 23895000 32249000 20804000 21741000 19657000 18431000 21973000 5 5 3 5 5 5 5 5 5 5 5 9784800 16464000 56661 16176000 12150000 9820200 10409000 15841000 13983000 13873000 16127000 9110500 15361000 839360 16427000 11606000 10531000 10760000 15744000 14145000 13630000 15491000 3 3 1 3 3 3 3 3 3 3 3 2069700000 1517000000 552640000 6070 1576;2556 5659 32445;32446;32447;32448;32449;32450;32451;32452;32453;32454;32455 38795;38796;38797;38798;38799;38800;38801;38802;38803;38804;38805;38806 38805 2128 12 FVMEVEVDGQK Unmodified 1279.6118 0.61183843 1576;2556 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3;Q96SI9;Q96SI9-2 ILF3;STRBP Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein no no 0 0 0 0 By MS/MS 2 0 1 1 62.575 62.338 3 0.0031242 19355 20211116_3440_TMUAki_TMT10x_S_F2 67.214 43.228 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6071 1576;2556 5659 32456 38807 38807 1 FVMKPPQVVR Oxidation (M) 1215.6798 0.67979884 738 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 0 0 1 1 By MS/MS 4 0 1 1 39.516 39.567 3 0.10198 10204 20211116_3431_TMUAki_TMT10x_P_F4 42.348 33.816 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6072 738 5660 32457 38808 38808 846 1 FVMKPPQVVR Unmodified 1199.6849 0.68488422 738 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 0 0 0 1 By MS/MS 5 0 1 1 47.81 47.981 3 0.0009341 13831 20211116_3433_TMUAki_TMT10x_P_F5 80.755 60.548 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6073 738 5660 32458 38809 38809 1 FVMQEEFSR Oxidation (M) 1187.5281 0.52810881 868 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 1 0 By MS/MS By MS/MS 3.29 1.03 2 2 2 1 3 4 43.073 43.056 2 0.00034978 12981 20211116_3430_TMUAki_TMT10x_P_F3 132.76 112.97 24094000 35237000 318680 45186000 42568000 41077000 27274000 28681000 29444000 24179000 32315000 22436000 32917000 2491500 45333000 40447000 41822000 28532000 29651000 29961000 23799000 31085000 10 10 5 10 10 10 10 10 10 10 10 17239000 24647000 190210 31368000 36534000 35374000 21208000 18858000 21582000 16549000 22283000 16052000 23024000 1815500 31585000 34653000 35419000 22325000 19938000 21965000 16258000 21474000 6 6 2 6 6 6 6 6 6 6 6 6854800 10590000 128470 13819000 6034500 5703100 6066100 9822700 7862000 7629200 10032000 6383500 9893500 676050 13748000 5794700 6403100 6207100 9713500 7996700 7541500 9610200 4 4 3 4 4 4 4 4 4 4 4 3483500000 2223900000 1259700000 6074 868 5661 32459;32460;32461;32462;32463;32464;32465 38810;38811;38812;38813;38814;38815;38816;38817;38818;38819 38811 1036 10 FVMQEEFSR Unmodified 1171.5332 0.53319418 868 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 By MS/MS By MS/MS 3.71 1.03 1 2 2 2 4 3 54.378 54.342 2 2.3799E-15 16104 20211116_3431_TMUAki_TMT10x_P_F4 239.13 198.35 52059000 80005000 539900 99011000 63528000 56496000 57405000 29171000 22101000 30872000 55049000 48475000 74724000 4746100 99029000 60777000 59563000 57456000 31089000 25198000 30081000 52084000 9 9 4 9 9 9 9 9 9 9 9 29786000 44755000 241670 54807000 40014000 40318000 35918000 16425000 12229000 17294000 30814000 27734000 41799000 2664700 54986000 38267000 41430000 35914000 17932000 14137000 16854000 29149000 5 5 2 5 5 5 5 5 5 5 5 22274000 35250000 298230 44204000 23515000 16178000 21488000 12745000 9872700 13578000 24236000 20741000 32925000 2081400 44044000 22510000 18133000 21542000 13157000 11062000 13227000 22935000 4 4 2 4 4 4 4 4 4 4 4 5503600000 2926600000 2577000000 6075 868 5661 32466;32467;32468;32469;32470;32471;32472 38820;38821;38822;38823;38824;38825;38826;38827;38828 38823 9 FVNDTLR Unmodified 863.45012 0.45011648 3043 Q9P013 CWC15 Spliceosome-associated protein CWC15 homolog yes yes 0 0 0 0 By MS/MS 4 0 1 1 40.214 40.412 2 0.087503 10940 20211116_3442_TMUAki_TMT10x_S_F4 60.682 14.666 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6076 3043 5662 32473 38829 38829 1 FVNLFPEVKPTIQDVLR Unmodified 2014.1251 0.12514752 400 O94973;O94973-2;O94973-3 AP2A2 AP-2 complex subunit alpha-2 yes no 0 0 0 1 By MS/MS 4 0 1 1 78.911 78.924 3 0.013135 26244 20211116_3431_TMUAki_TMT10x_P_F4 50.178 33.493 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6077 400 5663 32474 38830 38830 1 FVNLGIEPPKGVLLFGPPGTGK Unmodified 2236.262 0.26197535 945 P35998;P35998-2 PSMC2 26S protease regulatory subunit 7 yes no 0 0 0 1 By MS/MS By MS/MS 4.75 0.661 3 4 1 5 3 78.665 78.668 3;4 3.7519E-15 25226 20211116_3434_TMUAki_TMT10x_P_F6 139.83 133.39 27346000 48749000 362490 35527000 34311000 53996000 37589000 34844000 32347000 33882000 37608000 25464000 45439000 2639800 37454000 32999000 53438000 37795000 36365000 33323000 33131000 36116000 6 6 4 6 6 6 6 6 6 6 6 19524000 34123000 285930 24283000 20636000 43174000 26380000 25141000 22970000 24575000 26142000 18181000 31804000 1838200 25750000 19944000 42412000 26353000 26455000 23630000 24024000 25120000 4 4 3 4 4 4 4 4 4 4 4 7821400 14626000 76559 11244000 13675000 10822000 11209000 9703300 9376800 9307300 11466000 7283100 13635000 801670 11704000 13055000 11026000 11442000 9910300 9693600 9106300 10996000 2 2 1 2 2 2 2 2 2 2 2 6740500000 4005900000 2734600000 6078 945 5664 32475;32476;32477;32478;32479;32480;32481;32482 38831;38832;38833;38834;38835;38836 38834 6 FVNVVPTFGK Unmodified 1106.6124 0.61243078 1375 P62861 FAU 40S ribosomal protein S30 yes yes 0 0 0 0 By MS/MS By MS/MS 2.85 0.948 1 4 4 4 7 6 70.171 69.963 2;3 1.9183E-09 22531 20211116_3431_TMUAki_TMT10x_P_F4 182.65 162.13 194290000 327270000 1504900 322340000 227750000 277640000 207850000 197800000 200660000 199440000 234540000 180900000 305360000 16074000 328520000 217840000 283810000 211650000 205190000 205650000 194710000 225200000 21 21 9 21 21 21 21 21 21 21 21 100590000 166990000 1298800 163540000 140210000 200920000 124890000 102820000 104510000 102900000 119150000 93664000 155810000 9072500 167640000 134070000 200170000 126860000 109490000 107730000 100490000 114480000 11 11 5 11 11 11 11 11 11 11 11 93696000 160280000 206150 158810000 87539000 76724000 82954000 94986000 96146000 96542000 115390000 87235000 149550000 7001200 160890000 83777000 83634000 84792000 95700000 97918000 94224000 110720000 10 10 4 10 10 10 10 10 10 10 10 24688000000 12283000000 12405000000 6079 1375 5665 32483;32484;32485;32486;32487;32488;32489;32490;32491;32492;32493;32494;32495 38837;38838;38839;38840;38841;38842;38843;38844;38845;38846;38847;38848;38849;38850;38851;38852;38853;38854;38855;38856;38857;38858 38846 22 FVNVVPTFGKK Unmodified 1234.7074 0.7073938 1375 P62861 FAU 40S ribosomal protein S30 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 59.735 59.875 3 3.7939E-05 18660 20211116_3433_TMUAki_TMT10x_P_F5 96.64 73.723 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6080 1375 5666 32496;32497 38859;38860 38859 2 FVNWQVDGEYR Unmodified 1411.6521 0.65206377 457 O96008;O96008-2 TOMM40 Mitochondrial import receptor subunit TOM40 homolog yes no 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 61.366 61.408 2 3.1614E-14 18501 20211116_3445_TMUAki_TMT10x_S_F6 182.46 166.57 6410900 11397000 104930 11353000 6979600 5681800 6531500 5383200 4998700 6018000 8337800 5969500 10634000 576500 11500000 6683500 6131400 6601200 5507300 5270900 5851300 7939800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6410900 11397000 104930 11353000 6979600 5681800 6531500 5383200 4998700 6018000 8337800 5969500 10634000 576500 11500000 6683500 6131400 6601200 5507300 5270900 5851300 7939800 2 2 1 2 2 2 2 2 2 2 2 814900000 0 814900000 6081 457 5667 32498;32499;32500 38861;38862;38863 38863 3 FVPDECPR Unmodified 1018.4542 0.45421558 421 O95302;O95302-3 FKBP9 Peptidyl-prolyl cis-trans isomerase FKBP9 yes no 0 0 0 0 By MS/MS 3 0 1 1 35.525 35.516 2 0.0033798 10179 20211116_3430_TMUAki_TMT10x_P_F3 98.523 42.401 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6082 421 5668 32501 38864 38864 1 FVPFAAVAAANCINIPLMR Oxidation (M) 2090.0805 0.080522288 2841;2710 Q9H9B4;Q9BWM7 SFXN1;SFXN3 Sideroflexin-1;Sideroflexin-3 no no 0 0 1 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 79.605 79.624 3 2.1638E-08 28102 20211116_3446_TMUAki_TMT10x_S_F7 104.94 87.433 2651500 4606500 87734 4229100 3224000 4122900 3273400 2753600 2613200 3265000 3252800 2469300 4296900 289250 4339400 3096600 4175900 3297300 2884100 2710000 3167700 3118100 2 2 1 2 2 2 2 2 2 2 2 1303300 2050900 0 1917000 1184300 2252400 1443700 1286700 1166500 1403400 1461900 1213300 1913200 86020 1970200 1140700 2252200 1442300 1360500 1209400 1365800 1401100 1 1 0 1 1 1 1 1 1 1 1 1348200 2555600 87734 2312000 2039700 1870500 1829700 1466900 1446600 1861600 1790900 1256000 2383700 203230 2369300 1955800 1923700 1855100 1523600 1500700 1801900 1717000 1 1 1 1 1 1 1 1 1 1 1 2161100000 942800000 1218300000 6083 2841;2710 5669 32502;32503;32504 38865;38866 38866 2912 2 FVPFAAVAAANCINIPLMR Unmodified 2074.0856 0.085607665 2841;2710 Q9H9B4;Q9BWM7 SFXN1;SFXN3 Sideroflexin-1;Sideroflexin-3 no no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 80.944 80.956 3 7.1706E-32 26798 20211116_3436_TMUAki_TMT10x_P_F8 192.65 175.16 1549000 2592900 18872 2326600 1902200 2175000 2003800 1520000 1588400 1549500 1970200 1442300 2418400 139500 2390100 1826900 2210400 2014300 1579400 1647600 1512200 1888800 2 2 1 2 2 2 2 2 2 2 2 694280 881870 0 996960 681140 1195100 798620 694970 675090 714320 824110 646350 823310 45925 1011900 655320 1194000 800110 732420 697490 696840 790370 1 1 0 1 1 1 1 1 1 1 1 854670 1711000 18872 1329600 1221000 979920 1205100 825040 913280 835230 1146100 795920 1595100 93577 1378200 1171500 1016400 1214200 846970 950130 815310 1098400 1 1 1 1 1 1 1 1 1 1 1 1118500000 393640000 724890000 6084 2841;2710 5669 32505;32506;32507 38867;38868 38867 2 FVPLLPGNR Unmodified 1011.5866 0.58655038 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 60.847 60.647 2 6.9224E-05 21494 20211116_3441_TMUAki_TMT10x_S_F3 144.29 131.86 43741000 69016000 74366 71490000 53754000 62940000 46567000 55041000 51749000 52400000 58535000 40727000 64408000 3751000 72629000 51360000 64469000 47771000 56281000 52660000 51285000 56256000 7 7 4 7 7 7 7 7 7 7 7 18791000 28994000 18890 30331000 30702000 39800000 23455000 23420000 22307000 22326000 25429000 17496000 27060000 1660900 30990000 29252000 39594000 24135000 24606000 22855000 21849000 24434000 3 3 1 3 3 3 3 3 3 3 3 24950000 40021000 55476 41159000 23052000 23140000 23112000 31620000 29442000 30074000 33105000 23231000 37348000 2090100 41639000 22108000 24876000 23636000 31675000 29805000 29436000 31822000 4 4 3 4 4 4 4 4 4 4 4 4823800000 2436600000 2387200000 6085 1433 5670 32508;32509;32510;32511;32512;32513 38869;38870;38871;38872;38873;38874;38875 38874 7 FVPNLPK Unmodified 813.47487 0.47487467 3013 Q9NY33;Q9NY33-2 DPP3 Dipeptidyl peptidase 3 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 55.914 55.682 2 0.0079533 17929 20211116_3429_TMUAki_TMT10x_P_F2 100.82 56.686 9084900 15368000 345740 14859000 11899000 12892000 10092000 11386000 11277000 10888000 13127000 8461500 14338000 1114800 15165000 11385000 13221000 10367000 11638000 11486000 10654000 12606000 2 2 2 2 2 2 2 2 2 2 2 4058500 6433000 34546 6262100 6472800 7667900 4900900 4778600 4681500 4810500 5637000 3779100 6002000 402490 6421500 6169000 7659900 5046600 5005300 4806100 4696900 5408200 1 1 1 1 1 1 1 1 1 1 1 5026400 8935000 311190 8597000 5425900 5223800 5190700 6607500 6595700 6077200 7490000 4682400 8336100 712340 8743800 5215500 5560800 5320900 6632400 6680200 5957100 7197700 1 1 1 1 1 1 1 1 1 1 1 415270000 264810000 150470000 6086 3013 5671 32514;32515 38876;38877 38876 2 FVPQEMGPHTVAVK Oxidation (M) 1554.7864 0.78644876 1703 Q14315;Q14315-2 FLNC Filamin-C yes no 0 0 1 0 By MS/MS By MS/MS 6 0 4 3 1 40.681 40.845 3 3.7024E-06 9905 20211116_3434_TMUAki_TMT10x_P_F6 87.083 66.023 639880 1154000 267.3 1373000 656640 745700 733350 1375700 1664900 1307200 1284600 595800 1077600 53533 1375800 631560 812520 768690 1364800 1639500 1279500 1251000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 639880 1154000 267.3 1373000 656640 745700 733350 1375700 1664900 1307200 1284600 595800 1077600 53533 1375800 631560 812520 768690 1364800 1639500 1279500 1251000 2 2 1 2 2 2 2 2 2 2 2 188090000 0 188090000 6087 1703 5672 32516;32517;32518;32519 38878;38879;38880;38881;38882 38878 2292 5 FVPTALR Unmodified 802.47012 0.47012364 3253 Q9Y2W2 WBP11 WW domain-binding protein 11 yes yes 0 0 0 0 By MS/MS 2 0 1 1 47.569 47.282 2 0.015938 14502 20211116_3429_TMUAki_TMT10x_P_F2 86.512 5.9571 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6088 3253 5673 32520 38883 38883 1 FVPYYDLFMPSLK Unmodified 1618.8105 0.81053824 84 O00410;O00410-2;O00410-3 IPO5 Importin-5 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.667 1 4 4 5 4 81.076 81.05 2;3 9.2379E-19 27514 20211116_3442_TMUAki_TMT10x_S_F4 162.36 0 75900000 107660000 300940 132060000 64994000 66313000 76822000 25448000 24327000 33441000 62808000 70670000 100550000 5556000 132010000 62613000 70692000 75680000 28175000 28411000 32331000 59397000 8 8 4 8 8 8 8 8 8 8 8 41577000 60641000 185160 73115000 36028000 45529000 38592000 16346000 15869000 20280000 35590000 38713000 56631000 3418600 73296000 34613000 47428000 38308000 18210000 17838000 19645000 33721000 4 4 3 4 4 4 4 4 4 4 4 34323000 47015000 115770 58942000 28966000 20784000 38229000 9102100 8457800 13160000 27218000 31958000 43915000 2137500 58717000 28000000 23265000 37372000 9965500 10573000 12686000 25676000 4 4 1 4 4 4 4 4 4 4 4 6398000000 3891400000 2506600000 6089 84 5674 32521;32522;32523;32524;32525;32526;32527;32528;32529 38884;38885;38886;38887;38888;38889;38890;38891;38892 38892 9 FVQNVTSDLQLAAEFAAK Unmodified 1951.0051 0.005091963 1459 P85037;P85037-2 FOXK1 Forkhead box protein K1 yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 81.074 81.078 3 0.0046341 28273 20211116_3435_TMUAki_TMT10x_P_F7 56.149 37.785 1878700 3252000 0 2835500 1797200 3426700 2160500 1833100 2020100 2178400 2103900 1749200 3032900 144980 2931000 1731700 3418600 2168200 1954500 2064300 2113400 2027000 1 1 0 1 1 1 1 1 1 1 1 1878700 3252000 0 2835500 1797200 3426700 2160500 1833100 2020100 2178400 2103900 1749200 3032900 144980 2931000 1731700 3418600 2168200 1954500 2064300 2113400 2027000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 496270000 496270000 0 6090 1459 5675 32530;32531 38893 38893 1 FVSEDDRNSFTLK Unmodified 1556.7471 0.74708636 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 1.11 1 2 1 2 2 4 52.384 52.432 3 3.5811E-09 14504 20211116_3444_TMUAki_TMT10x_S_F5 128.76 104.78 61590000 94045000 759920 119240000 92372000 83376000 61468000 89814000 101940000 79163000 96924000 57350000 87848000 6098300 119330000 87830000 87295000 65218000 90673000 101750000 77753000 93654000 5 5 4 5 5 5 5 5 5 5 5 20568000 31206000 78495 39198000 57475000 50428000 29745000 30917000 34697000 26167000 33893000 19150000 29148000 2148000 39591000 54408000 50242000 31775000 32277000 35053000 25751000 32721000 2 2 1 2 2 2 2 2 2 2 2 41022000 62839000 681430 80047000 34898000 32948000 31723000 58897000 67239000 52996000 63030000 38200000 58700000 3950300 79742000 33423000 37054000 33444000 58396000 66700000 52002000 60933000 3 3 3 3 3 3 3 3 3 3 3 3389800000 1579000000 1810800000 6091 916 5676 32532;32533;32534;32535;32536;32537 38894;38895;38896;38897;38898 38897 5 FVSFLGR Unmodified 824.45447 0.45447358 1172 P52292 KPNA2 Importin subunit alpha-1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.57 1.29 1 2 2 2 4 3 62.196 62.123 2 0.00010958 21045 20211116_3430_TMUAki_TMT10x_P_F3 198.52 132.62 41088000 67548000 21137 67148000 48807000 54754000 37245000 41708000 41682000 37066000 46348000 38252000 63028000 2952300 68345000 46471000 56251000 38521000 42925000 42376000 36392000 44565000 8 8 1 8 8 8 8 8 8 8 8 22357000 35332000 21137 35655000 29219000 39724000 23060000 22298000 22254000 19834000 24677000 20814000 32969000 1684900 36412000 27844000 39825000 23687000 23477000 22761000 19472000 23730000 5 5 1 5 5 5 5 5 5 5 5 18731000 32217000 0 31493000 19588000 15030000 14186000 19410000 19428000 17232000 21671000 17438000 30059000 1267400 31933000 18627000 16425000 14834000 19448000 19615000 16919000 20836000 3 3 0 3 3 3 3 3 3 3 3 5487100000 3072300000 2414800000 6092 1172 5677 32538;32539;32540;32541;32542;32543;32544 38899;38900;38901;38902;38903;38904;38905;38906 38901 8 FVSISDLLVPK Unmodified 1216.7067 0.7067251 1133 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 0 By MS/MS By MS/MS 2.82 1.52 10 41 38 7 1 3 4 53 51 49.667 49.595 2;3 2.8585E-23 27452 20211116_3429_TMUAki_TMT10x_P_F2 244.55 201.96 426530000 688760000 1601900 641870000 480280000 601630000 451030000 383060000 395910000 416660000 517380000 397110000 642520000 32536000 657520000 459550000 610470000 457320000 401500000 409490000 405550000 495340000 91 90 53 91 91 91 90 90 90 89 90 214530000 348150000 162340 314840000 203700000 379240000 198580000 192220000 201050000 206900000 250920000 199730000 324740000 15159000 324500000 195030000 378170000 201770000 205310000 206200000 201460000 240510000 35 35 13 35 35 35 35 35 35 34 35 212000000 340620000 1439500 327030000 276580000 222390000 252450000 190840000 194860000 209760000 266460000 197380000 317780000 17377000 333020000 264520000 232300000 255550000 196190000 203300000 204090000 254830000 56 55 40 56 56 56 55 55 55 55 55 107950000000 62161000000 45784000000 6093 1133 5678 32545;32546;32547;32548;32549;32550;32551;32552;32553;32554;32555;32556;32557;32558;32559;32560;32561;32562;32563;32564;32565;32566;32567;32568;32569;32570;32571;32572;32573;32574;32575;32576;32577;32578;32579;32580;32581;32582;32583;32584;32585;32586;32587;32588;32589;32590;32591;32592;32593;32594;32595;32596;32597;32598;32599;32600;32601;32602;32603;32604;32605;32606;32607;32608;32609;32610;32611;32612;32613;32614;32615;32616;32617;32618;32619;32620;32621;32622;32623;32624;32625;32626;32627;32628;32629;32630;32631;32632;32633;32634;32635;32636;32637;32638;32639;32640;32641;32642;32643;32644;32645;32646;32647;32648 38907;38908;38909;38910;38911;38912;38913;38914;38915;38916;38917;38918;38919;38920;38921;38922;38923;38924;38925;38926;38927;38928;38929;38930;38931;38932;38933;38934;38935;38936;38937;38938;38939;38940;38941;38942;38943;38944;38945;38946;38947;38948;38949;38950;38951;38952;38953;38954;38955;38956;38957;38958;38959;38960;38961;38962;38963;38964;38965;38966;38967;38968;38969;38970;38971;38972;38973;38974;38975;38976;38977;38978;38979;38980;38981;38982;38983;38984;38985;38986;38987;38988;38989;38990;38991;38992;38993;38994;38995;38996;38997;38998;38999;39000;39001;39002;39003;39004;39005;39006;39007;39008;39009;39010;39011;39012;39013 38922 107 FVSTTSQNTQLVRPPIR Unmodified 1943.0589 0.058858868 2314 Q8WWK9;Q8WWK9-4;Q8WWK9-6;Q8WWK9-5 CKAP2 Cytoskeleton-associated protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 46.134 46.259 3 5.8753E-61 12892 20211116_3431_TMUAki_TMT10x_P_F4 292.8 269.32 3041200 4793800 50792 6068000 7710000 8915000 4919400 6079400 6799400 5287100 5077000 2831800 4477900 346160 6143000 7324400 8842700 5194100 6300500 6773800 5196300 4950900 2 2 1 2 2 2 2 2 2 2 2 3041200 4793800 50792 6068000 7710000 8915000 4919400 6079400 6799400 5287100 5077000 2831800 4477900 346160 6143000 7324400 8842700 5194100 6300500 6773800 5196300 4950900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 384080000 384080000 0 6094 2314 5679 32649;32650 39014;39015;39016 39015 3 FVTDIDELGK Unmodified 1135.5761 0.57610486 1469 Q00534 CDK6 Cyclin-dependent kinase 6 yes yes 0 0 0 0 By MS/MS 5 0 1 1 67.675 67.704 2 0.090588 20792 20211116_3444_TMUAki_TMT10x_S_F5 56.632 25.403 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6095 1469 5680 32651 39017 39017 1 FVTDIDELGKDLLLK Unmodified 1717.9502 0.95020285 1469 Q00534 CDK6 Cyclin-dependent kinase 6 yes yes 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 80.117 80.137 3 0.0006148 28288 20211116_3446_TMUAki_TMT10x_S_F7 75.911 63.356 2697200 5246800 116390 3707600 4642200 5406000 4064600 5455600 5189700 5350500 5001900 2512200 4890100 359320 3916500 4443700 5403600 4187900 5541200 5223700 5229900 4831000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2697200 5246800 116390 3707600 4642200 5406000 4064600 5455600 5189700 5350500 5001900 2512200 4890100 359320 3916500 4443700 5403600 4187900 5541200 5223700 5229900 4831000 1 1 1 1 1 1 1 1 1 1 1 414260000 0 414260000 6096 1469 5681 32652;32653 39018 39018 1 FVTVQTISGTGALR Unmodified 1448.7987 0.798728 471 P00505;P00505-2 GOT2 Aspartate aminotransferase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 3.11 0.737 2 4 3 4 5 60.37 60.149 2;3 3.9806E-37 20179 20211116_3430_TMUAki_TMT10x_P_F3 245.48 188.93 54546000 99529000 260680 101920000 76663000 78253000 57389000 72554000 62438000 66765000 77435000 50787000 92880000 4814600 103450000 73022000 81050000 59377000 73882000 63831000 65445000 74234000 13 13 8 13 13 13 13 13 13 13 13 21363000 35147000 130590 36670000 34778000 50089000 29020000 30473000 25611000 27160000 29878000 19891000 32802000 1896600 37503000 33198000 49759000 29632000 31874000 26355000 26662000 28690000 6 6 3 6 6 6 6 6 6 6 6 33182000 64382000 130090 65251000 41885000 28163000 28369000 42081000 36827000 39605000 47557000 30896000 60079000 2918000 65951000 39824000 31291000 29745000 42008000 37476000 38783000 45544000 7 7 5 7 7 7 7 7 7 7 7 10851000000 5996800000 4854300000 6097 471 5682 32654;32655;32656;32657;32658;32659;32660;32661;32662 39019;39020;39021;39022;39023;39024;39025;39026;39027;39028;39029;39030;39031 39021 13 FVVDLSDQVAPTDIEEGMR Oxidation (M) 2136.0045 0.0044996155 945 P35998 PSMC2 26S protease regulatory subunit 7 yes yes 0 0 1 0 By MS/MS By MS/MS 2.42 1.32 4 3 2 2 1 6 6 73.865 73.781 2;3 3.9363E-06 26785 20211116_3441_TMUAki_TMT10x_S_F3 85.937 74.702 27671000 46267000 317070 41929000 34465000 44139000 33440000 31373000 29176000 31341000 36102000 25766000 43156000 2578400 43114000 33033000 44542000 33841000 32541000 30114000 30611000 34612000 13 13 9 13 13 13 13 13 13 13 13 15082000 24955000 175410 22009000 17844000 29800000 18199000 16934000 15992000 16678000 19134000 14044000 23274000 1382300 22777000 17125000 29589000 18373000 17859000 16477000 16299000 18360000 6 6 3 6 6 6 6 6 6 6 6 12590000 21312000 141660 19920000 16620000 14338000 15240000 14439000 13184000 14663000 16968000 11723000 19881000 1196200 20337000 15908000 14954000 15467000 14682000 13637000 14312000 16251000 7 7 6 7 7 7 7 7 7 7 7 7945900000 4399500000 3546400000 6098 945 5683 32663;32664;32665;32666;32667;32668;32669;32670;32671;32672;32673;32674 39032;39033;39034;39035;39036;39037;39038;39039;39040;39041;39042;39043;39044;39045;39046 39043 1204 15 FVVGSHVR Unmodified 899.49774 0.49773538 1114 P49736 MCM2 DNA replication licensing factor MCM2 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 31.526 31.575 3 0.00023859 6599 20211116_3428_TMUAki_TMT10x_P_F1 157.58 146.71 235780 536840 304.84 437810 311220 317420 283320 342630 400420 339950 469780 219530 500560 20888 451830 297730 331360 292470 347010 404690 332120 451030 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 235780 536840 304.84 437810 311220 317420 283320 342630 400420 339950 469780 219530 500560 20888 451830 297730 331360 292470 347010 404690 332120 451030 1 1 1 1 1 1 1 1 1 1 1 125790000 0 125790000 6099 1114 5684 32675;32676 39047;39048 39047 2 FVVPKPR Unmodified 841.51741 0.51740818 1466 Q00325-2;Q00325 SLC25A3 Phosphate carrier protein, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 3.5 1.12 2 2 2 2 4 4 39.879 39.872 3 0.0023747 11408 20211116_3430_TMUAki_TMT10x_P_F3 113.25 80.132 35642000 49429000 172870 54002000 40933000 41480000 38734000 29534000 21582000 29184000 38844000 33183000 46140000 2612700 54581000 39166000 42761000 38874000 30621000 23319000 28517000 36937000 12 12 5 12 12 12 12 12 12 12 12 21004000 29544000 153790 31212000 28956000 30917000 21152000 17370000 13620000 16918000 22330000 19558000 27574000 1899600 31719000 27571000 31210000 21630000 18330000 14494000 16542000 21271000 8 8 4 8 8 8 8 8 8 8 8 14637000 19885000 19082 22790000 11977000 10563000 17582000 12165000 7962400 12265000 16514000 13625000 18566000 713060 22862000 11595000 11551000 17243000 12291000 8824800 11975000 15666000 4 4 1 4 4 4 4 4 4 4 4 3317800000 1886500000 1431300000 6100 1466 5685 32677;32678;32679;32680;32681;32682;32683;32684 39049;39050;39051;39052;39053;39054;39055;39056;39057;39058;39059;39060 39054 12 FVVQNVSAQK Unmodified 1118.6084 0.60840804 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 4 2 3 3 46.987 46.917 2;3 1.3895E-08 12778 20211116_3428_TMUAki_TMT10x_P_F1 173.37 125.2 8108300 13016000 123570 15055000 12025000 11490000 8725300 8796100 9787200 8577800 11072000 7550500 12153000 833870 15161000 11454000 11865000 9055800 9072700 9955900 8386500 10641000 5 5 3 5 5 5 5 5 5 5 5 3737000 5876200 57958 6392900 8828700 7725000 5012000 3818800 3954700 3532600 4597600 3479900 5485000 435150 6505300 8372900 7699800 5250800 4071300 4092300 3461900 4415200 2 2 2 2 2 2 2 2 2 2 2 4371300 7139400 65612 8661800 3196200 3764900 3713300 4977300 5832500 5045200 6474100 4070600 6667500 398720 8655700 3081100 4164700 3805100 5001400 5863600 4924600 6225500 3 3 1 3 3 3 3 3 3 3 3 526310000 296010000 230300000 6101 2345 5686 32685;32686;32687;32688;32689;32690 39061;39062;39063;39064;39065 39061 5 FVVQNVSAQKDGEK Unmodified 1547.7944 0.79437091 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 1 By MS/MS 7 0 1 1 43.525 44.006 3 0.098121 12945 20211116_3435_TMUAki_TMT10x_P_F7 37.156 7.4673 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6102 2345 5687 32691 39066 39066 1 FVVTAPPAR Unmodified 956.54435 0.54435122 3105 Q9UFW8 CGGBP1 CGG triplet repeat-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 43.782 43.584 2 0.0047266 11451 20211116_3428_TMUAki_TMT10x_P_F1 75.213 42.372 2966000 4809500 42751 5386500 2802900 2638900 2782100 4031400 4202500 3696500 4422200 2762000 4489900 283460 5413300 2689600 2889100 2867100 4018500 4220900 3624000 4259100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2966000 4809500 42751 5386500 2802900 2638900 2782100 4031400 4202500 3696500 4422200 2762000 4489900 283460 5413300 2689600 2889100 2867100 4018500 4220900 3624000 4259100 2 2 2 2 2 2 2 2 2 2 2 51175000 0 51175000 6103 3105 5688 32692;32693 39067;39068;39069 39067 3 FVYKEEHPFEK Unmodified 1451.7085 0.70851601 408 O95166 GABARAP Gamma-aminobutyric acid receptor-associated protein yes yes 0 0 0 1 By MS/MS By matching 6 0 2 1 1 45.097 45.217 4 0.0015567 11496 20211116_3434_TMUAki_TMT10x_P_F6 78.908 45.961 2281200 3420300 57433 4232700 5917000 4916700 3147600 2489900 2804100 2011900 3027100 2124400 3194500 293570 4270900 5607400 4912100 3326900 2639700 2875600 1984600 2913300 1 1 1 1 1 1 1 1 1 1 1 2281200 3420300 57433 4232700 5917000 4916700 3147600 2489900 2804100 2011900 3027100 2124400 3194500 293570 4270900 5607400 4912100 3326900 2639700 2875600 1984600 2913300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 442660000 282810000 159860000 6104 408 5689 32694;32695 39070 39070 1 FWAYEQYKK Unmodified 1261.6132 0.61315906 1983 Q6NUK1;Q6NUK1-2 SLC25A24 Calcium-binding mitochondrial carrier protein SCaMC-1 yes no 0 0 0 1 By MS/MS 2 0 1 1 55.798 55.549 3 0.029173 17851 20211116_3429_TMUAki_TMT10x_P_F2 59.067 37.817 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6105 1983 5690 32696 39071 39071 1 FWESPETVSQLDSVR Unmodified 1778.8475 0.84752869 2379 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 70.245 69.989 3 0.10656 24231 20211116_3430_TMUAki_TMT10x_P_F3 29.99 17.544 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6106 2379 5691 32697 39072 39072 1 FWEVISDEHGIDPSGNYVGDSDLQLER Unmodified 3076.405 0.40502337 1640 Q13509 TUBB3 Tubulin beta-3 chain yes yes 0 0 0 0 By MS/MS By MS/MS 1.62 0.484 3 5 4 4 71.187 71.125 3;4 5.8966E-42 25471 20211116_3428_TMUAki_TMT10x_P_F1 184.12 168.82 24756000 42912000 198090 43228000 26545000 33692000 30025000 17249000 15357000 19936000 28857000 23050000 40042000 1945900 43935000 25531000 34542000 29819000 18448000 16744000 19360000 27420000 13 13 5 13 13 13 13 13 13 13 13 10982000 19423000 82244 19042000 10113000 19725000 13339000 8286100 7056400 8637600 12446000 10224000 18122000 759730 19463000 9769100 19795000 13167000 9012500 7644800 8421400 11839000 6 6 1 6 6 6 6 6 6 6 6 13774000 23489000 115850 24186000 16431000 13967000 16686000 8963100 8300900 11299000 16412000 12825000 21920000 1186200 24472000 15762000 14747000 16653000 9435500 9099500 10939000 15581000 7 7 4 7 7 7 7 7 7 7 7 10903000000 5788300000 5114900000 6107 1640 5692 32698;32699;32700;32701;32702;32703;32704;32705 39073;39074;39075;39076;39077;39078;39079;39080;39081;39082;39083;39084;39085 39073 13 FWEVISDEHGIDPTGSYHGDSDLQLER Unmodified 3101.4003 0.40027234 1668;2689 Q13885;Q9BVA1 TUBB2A;TUBB2B Tubulin beta-2A chain;Tubulin beta-2B chain no no 0 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 72.391 72.228 4 7.0793E-18 24608 20211116_3429_TMUAki_TMT10x_P_F2 132.35 60.123 23024000 37067000 286670 35478000 27422000 31625000 28564000 19269000 17870000 22787000 28261000 21440000 34582000 2196900 36248000 26337000 32177000 28583000 20320000 19016000 22110000 26941000 6 6 4 6 6 6 6 6 6 6 6 9667000 14973000 0 14578000 10780000 16578000 10796000 7537800 7627900 9724800 11899000 9000600 13970000 776300 14929000 10334000 16562000 10852000 8185700 8050200 9407600 11346000 2 2 0 2 2 2 2 2 2 2 2 13357000 22094000 286670 20901000 16642000 15047000 17767000 11731000 10242000 13062000 16362000 12439000 20612000 1420600 21319000 16002000 15615000 17730000 12135000 10966000 12703000 15595000 4 4 4 4 4 4 4 4 4 4 4 3285500000 2434200000 851290000 6108 1668;2689 5693 32706;32707;32708;32709 39086;39087;39088;39089;39090;39091 39087 6 FWEVISDEHGIDPTGTYHGDSDLQLDR Unmodified 3101.4003 0.40027234 539 P07437 TUBB Tubulin beta chain yes yes 0 0 0 0 By MS/MS By MS/MS 2.08 1.07 5 4 2 2 6 7 73.66 73.557 3;4 1.392E-24 23538 20211116_3428_TMUAki_TMT10x_P_F1 144.73 56.505 246460000 388950000 1801100 413800000 280480000 338590000 289510000 164770000 155810000 210390000 271360000 229460000 363020000 16727000 419270000 269070000 345660000 289050000 177660000 168460000 203600000 258200000 31 31 14 31 31 31 31 31 31 31 31 138440000 213860000 1242400 221820000 139920000 229900000 160520000 88803000 83042000 114970000 143390000 128900000 199580000 9432700 225850000 134620000 230540000 159340000 98193000 90012000 111200000 136450000 16 16 8 16 16 16 16 16 16 16 16 108020000 175090000 558720 191990000 140560000 108680000 128990000 75967000 72769000 95422000 127980000 100570000 163440000 7294400 193420000 134450000 115120000 129710000 79471000 78449000 92393000 121740000 15 15 6 15 15 15 15 15 15 15 15 100510000000 59900000000 40610000000 6109 539 5694 32710;32711;32712;32713;32714;32715;32716;32717;32718;32719;32720;32721;32722 39092;39093;39094;39095;39096;39097;39098;39099;39100;39101;39102;39103;39104;39105;39106;39107;39108;39109;39110;39111;39112;39113;39114;39115;39116;39117;39118;39119;39120;39121;39122 39095 31 FWEVISDEHGIDPTGTYHGDSDLQLER Unmodified 3115.4159 0.4159224 1418;488 P68371;P04350 TUBB4B;TUBB4A Tubulin beta-4B chain;Tubulin beta-4A chain no no 0 0 0 0 By MS/MS By MS/MS 2.78 1.31 2 2 2 2 1 5 4 73.009 72.899 4 4.436E-33 24217 20211116_3442_TMUAki_TMT10x_S_F4 168.25 160.78 59499000 101020000 590490 90138000 71722000 95355000 75622000 50229000 46993000 57181000 69142000 55403000 94218000 4075900 92802000 68900000 95805000 75616000 53555000 49846000 55559000 66013000 19 19 12 19 19 19 19 19 19 19 19 34745000 55176000 375600 45994000 34229000 64225000 41790000 25603000 25801000 31271000 35140000 32354000 51451000 2151000 47843000 33031000 63435000 41499000 28150000 27279000 30307000 33609000 10 10 6 10 10 10 10 10 10 10 10 24753000 45840000 214890 44144000 37493000 31130000 33832000 24626000 21192000 25910000 34003000 23049000 42767000 1924900 44959000 35869000 32370000 34117000 25405000 22567000 25252000 32405000 9 9 6 9 9 9 9 9 9 9 9 20990000000 13137000000 7853300000 6110 1418;488 5695 32723;32724;32725;32726;32727;32728;32729;32730;32731 39123;39124;39125;39126;39127;39128;39129;39130;39131;39132;39133;39134;39135;39136;39137;39138;39139;39140;39141 39141 19 FWPAIDDGLRR Unmodified 1344.6939 0.693869 2136 Q8IV08 PLD3 Phospholipase D3 yes yes 0 0 0 1 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 59.407 59.494 3 1.346E-14 20008 20211116_3439_TMUAki_TMT10x_S_F1 155.26 125.79 17331000 28446000 268420 29309000 22775000 24809000 23606000 14307000 11733000 14463000 19952000 16139000 26547000 1735300 29771000 21873000 25315000 23534000 15081000 12748000 14119000 18993000 4 4 3 4 4 4 4 4 4 4 4 10339000 15537000 175050 17129000 14679000 17837000 15190000 8151300 6137500 8153900 11037000 9627900 14503000 1081100 17372000 14098000 17910000 15101000 8776500 6813800 7963400 10495000 2 2 2 2 2 2 2 2 2 2 2 6992100 12910000 93374 12180000 8096300 6972000 8416300 6155800 5595500 6308800 8915500 6510900 12043000 654180 12399000 7775000 7405500 8432900 6304600 5933700 6155200 8497700 2 2 1 2 2 2 2 2 2 2 2 638200000 415810000 222380000 6111 2136 5696 32732;32733;32734 39142;39143;39144;39145;39146 39144 5 FYALDPSFPR Unmodified 1211.5975 0.597509 1552 Q08J23;Q08J23-2;Q08J23-3 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 68.73 68.706 2 0.00048325 21651 20211116_3436_TMUAki_TMT10x_P_F8 107.29 67.649 28844000 48153000 112530 42812000 31734000 42534000 33662000 29518000 27075000 29758000 34753000 26856000 44912000 2345300 44048000 30471000 43055000 33840000 30676000 28105000 29054000 33288000 5 5 2 5 5 5 5 5 5 5 5 14649000 23941000 90028 21851000 15140000 27766000 17282000 15090000 14485000 15451000 17397000 13640000 22332000 1274700 22528000 14574000 27637000 17331000 15993000 14962000 15075000 16692000 3 3 1 3 3 3 3 3 3 3 3 14195000 24212000 22502 20961000 16594000 14768000 16380000 14427000 12590000 14307000 17357000 13216000 22580000 1070600 21521000 15897000 15419000 16509000 14682000 13143000 13978000 16596000 2 2 1 2 2 2 2 2 2 2 2 1237100000 454810000 782330000 6112 1552 5697 32735;32736 39147;39148;39149;39150;39151 39147 5 FYALSASFEPFSNK Unmodified 1606.7668 0.76675917 832 P27797 CALR Calreticulin yes yes 0 0 0 0 By MS/MS By MS/MS 2.91 1.48 4 8 18 3 2 13 22 64.414 64.363 2;3 3.9459E-37 25790 20211116_3440_TMUAki_TMT10x_S_F2 245.58 207.59 243150000 389120000 568250 383280000 250250000 314050000 268850000 169270000 170590000 188580000 262010000 226380000 363070000 19031000 390380000 240340000 320950000 268690000 179990000 181090000 183380000 249920000 41 41 24 41 41 41 41 41 41 41 41 138400000 220320000 280070 209410000 121500000 206530000 138160000 92924000 93864000 103840000 143870000 128860000 205540000 10773000 214360000 116890000 208030000 137900000 100540000 99204000 100970000 137240000 11 11 5 11 11 11 11 11 11 11 11 104750000 168810000 288170 173870000 128740000 107510000 130690000 76345000 76723000 84733000 118130000 97522000 157540000 8257800 176030000 123440000 112920000 130790000 79446000 81884000 82409000 112680000 30 30 19 30 30 30 30 30 30 30 30 43827000000 25130000000 18697000000 6113 832 5698 32737;32738;32739;32740;32741;32742;32743;32744;32745;32746;32747;32748;32749;32750;32751;32752;32753;32754;32755;32756;32757;32758;32759;32760;32761;32762;32763;32764;32765;32766;32767;32768;32769;32770;32771 39152;39153;39154;39155;39156;39157;39158;39159;39160;39161;39162;39163;39164;39165;39166;39167;39168;39169;39170;39171;39172;39173;39174;39175;39176;39177;39178;39179;39180;39181;39182;39183;39184;39185;39186;39187;39188;39189;39190;39191;39192;39193 39166 42 FYAYNPLAGGLLTGK Unmodified 1583.8348 0.83477916 218 O43488;Q8NHP1 AKR7A2;AKR7L Aflatoxin B1 aldehyde reductase member 2;Aflatoxin B1 aldehyde reductase member 4 yes no 0 0 0 0 By MS/MS By MS/MS 4.38 0.696 1 3 4 3 5 78.761 78.756 2;3 2.0457E-23 26452 20211116_3433_TMUAki_TMT10x_P_F5 181.66 158.44 24153000 39124000 114730 34706000 27365000 37124000 29326000 23108000 22634000 24413000 28295000 22488000 36490000 2037300 35754000 26287000 37355000 29437000 24241000 23520000 23789000 27120000 5 5 3 5 5 5 5 5 5 5 5 14054000 22111000 73395 19319000 13734000 24852000 16293000 13521000 13333000 14314000 16097000 13086000 20621000 1196900 19988000 13235000 24722000 16302000 14343000 13792000 13947000 15443000 3 3 2 3 3 3 3 3 3 3 3 10099000 17014000 41335 15387000 13631000 12271000 13033000 9587100 9301400 10099000 12197000 9402800 15869000 840380 15766000 13052000 12633000 13135000 9898300 9728600 9842300 11677000 2 2 1 2 2 2 2 2 2 2 2 6657500000 3444100000 3213400000 6114 218 5699 32772;32773;32774;32775;32776;32777;32778;32779 39194;39195;39196;39197;39198;39199 39196 6 FYEAFSK Unmodified 890.41742 0.41741937 553 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 57.466 57.76 2 0.0046945 17336 20211116_3436_TMUAki_TMT10x_P_F8 112.17 71.225 95829000 144750000 1153200 187450000 161670000 150910000 107830000 101100000 96401000 84379000 111360000 89233000 135230000 9763400 187670000 153720000 154880000 111840000 104810000 99103000 83098000 106960000 8 8 7 8 8 8 8 8 8 8 8 49285000 73524000 209610 88097000 134430000 113580000 61785000 52846000 57418000 51987000 68280000 45889000 68660000 5295500 89226000 127070000 112770000 66334000 56769000 58990000 50809000 65531000 5 5 4 5 5 5 5 5 5 5 5 46544000 71227000 943600 99355000 27243000 37334000 46043000 48254000 38983000 32392000 43080000 43344000 66568000 4467900 98444000 26652000 42105000 45502000 48036000 40113000 32289000 41431000 3 3 3 3 3 3 3 3 3 3 3 10451000000 6551900000 3898600000 6115 553 5700 32780;32781;32782;32783;32784 39200;39201;39202;39203;39204;39205;39206;39207 39204 8 FYEEVHDLER Unmodified 1335.6095 0.60953025 1240;2602 P55209;P55209-2;P55209-3;Q99733;Q99733-2 NAP1L1;NAP1L4 Nucleosome assembly protein 1-like 1;Nucleosome assembly protein 1-like 4 no no 0 0 0 0 By MS/MS By MS/MS 2.12 1.05 3 2 2 1 3 5 48.534 48.361 2;3 5.6566E-12 15371 20211116_3439_TMUAki_TMT10x_S_F1 215.87 181.99 13694000 24576000 281930 26160000 20908000 23533000 16640000 24510000 22833000 21122000 22235000 12752000 22938000 1484800 26536000 19957000 24158000 17294000 24770000 22936000 20768000 21468000 8 8 7 8 8 8 8 8 8 8 8 5563200 9958100 127890 10701000 13553000 15733000 9258000 10680000 9262300 8854100 8670900 5180800 9294800 692320 10940000 12895000 15604000 9615500 11059000 9401700 8722600 8382800 3 3 3 3 3 3 3 3 3 3 3 8130800 14618000 154040 15459000 7355000 7799800 7382200 13830000 13570000 12268000 13564000 7571600 13643000 792470 15597000 7061400 8553800 7678200 13711000 13535000 12046000 13085000 5 5 4 5 5 5 5 5 5 5 5 8207400000 4806000000 3401400000 6116 1240;2602 5701 32785;32786;32787;32788;32789;32790;32791;32792 39208;39209;39210;39211;39212;39213;39214;39215;39216;39217 39211 10 FYEEVHDLERK Unmodified 1463.7045 0.70449327 1240;2602 P55209;P55209-2;P55209-3;Q99733;Q99733-2 NAP1L1;NAP1L4 Nucleosome assembly protein 1-like 1;Nucleosome assembly protein 1-like 4 no no 0 0 0 1 By MS/MS By MS/MS 3.31 1.26 1 3 3 3 3 7 6 48.454 48.427 3;4 3.2414E-19 15340 20211116_3430_TMUAki_TMT10x_P_F3 229.68 178.43 66964000 103040000 743590 130290000 105590000 91930000 66089000 77550000 83741000 69246000 90103000 62354000 96246000 6677700 130420000 100290000 95695000 69649000 79325000 84645000 67971000 86722000 19 19 15 19 19 19 19 19 19 19 19 32789000 47842000 368140 58961000 75320000 66592000 38521000 36002000 38778000 32398000 41852000 30532000 44683000 3628500 59479000 71315000 66682000 41005000 38040000 39548000 31790000 40278000 10 10 8 10 10 10 10 10 10 10 10 34175000 55195000 375450 71326000 30270000 25337000 27568000 41548000 44963000 36848000 48251000 31823000 51563000 3049200 70937000 28974000 29013000 28643000 41285000 45097000 36181000 46444000 9 9 7 9 9 9 9 9 9 9 9 9768900000 5724700000 4044100000 6117 1240;2602 5702 32793;32794;32795;32796;32797;32798;32799;32800;32801;32802;32803;32804;32805 39218;39219;39220;39221;39222;39223;39224;39225;39226;39227;39228;39229;39230;39231;39232;39233;39234;39235;39236 39220 19 FYELELNIQGHK Unmodified 1489.7565 0.75652884 2109 Q86UV5;Q86UV5-2;Q86UV5-8;Q86UV5-4;Q86UV5-7;Q86UV5-3 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes no 0 0 0 0 By MS/MS 5 0 1 1 62.518 62.676 3 0.054954 19815 20211116_3433_TMUAki_TMT10x_P_F5 44.616 21.38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6118 2109 5703 32806 39237 39237 1 FYEQFSK Unmodified 947.43888 0.43888309 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 53.218 53.522 2 0.0041413 16039 20211116_3433_TMUAki_TMT10x_P_F5 114.93 69.62 70338000 105350000 602870 136290000 139100000 109260000 80813000 88117000 98201000 77858000 106800000 65491000 98419000 6766000 136450000 131910000 112500000 85558000 90351000 99447000 76462000 102760000 9 9 7 9 9 9 9 9 9 9 9 34977000 51513000 430840 65253000 110140000 79920000 46349000 43488000 48973000 38835000 50060000 32566000 48119000 3766700 65818000 103990000 79694000 50430000 45915000 49745000 38120000 48257000 4 4 3 4 4 4 4 4 4 4 4 35361000 53837000 172030 71035000 28958000 29343000 34464000 44629000 49228000 39023000 56739000 32925000 50300000 2999300 70629000 27915000 32808000 35128000 44436000 49702000 38343000 54502000 5 5 4 5 5 5 5 5 5 5 5 3302500000 1683500000 1619000000 6119 544 5704 32807;32808;32809;32810;32811;32812 39238;39239;39240;39241;39242;39243;39244 39238 7 FYEQMNGPVAGASR Oxidation (M) 1541.6933 0.69327665 856;855 P29692;P29692-3;P29692-4;P29692-2 EEF1D Elongation factor 1-delta no no 0 0 1 0 By MS/MS By MS/MS 4.33 0.471 4 2 4 2 39.115 39.231 2;3 6.8281E-07 10309 20211116_3442_TMUAki_TMT10x_S_F4 120.55 108.7 2208600 3148600 11347 3938200 4697500 4134900 2659000 2655700 3513300 2392300 3288300 2056400 2940900 220710 3964800 4453200 4167000 2830200 2766900 3528800 2347300 3179000 4 4 2 4 4 4 4 4 4 4 4 1653500 2247000 3848 2871500 4187300 3681700 2155900 1882400 2577900 1783700 2398200 1539500 2099000 170780 2897400 3963800 3660200 2306100 2001800 2597800 1746100 2319000 2 2 1 2 2 2 2 2 2 2 2 555090 901610 7498.7 1066700 510270 453230 503100 773330 935380 608630 890030 516880 841920 49932 1067400 489390 506760 524080 765180 931070 601210 859980 2 2 1 2 2 2 2 2 2 2 2 453150000 408350000 44799000 6120 855;856 5705 32813;32814;32815;32816;32817;32818 39245;39246;39247;39248;39249;39250 39250 1023 6 FYEQVVQAIQR Unmodified 1379.7197 0.7197494 2645 Q9BRX2 PELO Protein pelota homolog yes yes 0 0 0 0 By MS/MS 8 0 1 1 68.738 68.839 2 0.0035491 21802 20211116_3436_TMUAki_TMT10x_P_F8 74.944 46.763 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6121 2645 5706 32819 39251 39251 1 FYFENLLSK Unmodified 1159.5914 0.59136099 1646 Q13555;Q13555-8;Q13555-5;Q13555-9;Q13555-11;Q13555-6;Q13555-10;Q13555-7;Q13555-4;Q13555-2;Q13555-3 CAMK2G Calcium/calmodulin-dependent protein kinase type II subunit gamma yes no 0 0 0 0 By MS/MS By matching 2 0 2 1 1 78.487 78.456 2 0.0024225 27142 20211116_3429_TMUAki_TMT10x_P_F2 85.377 45.668 3804700 6375100 0 5532100 3595700 7321600 4473100 3945200 3764100 4345400 4532800 3542200 5945500 266530 5730000 3466800 7272500 4469400 4193500 3887600 4227400 4348800 1 1 0 1 1 1 1 1 1 1 1 3804700 6375100 0 5532100 3595700 7321600 4473100 3945200 3764100 4345400 4532800 3542200 5945500 266530 5730000 3466800 7272500 4469400 4193500 3887600 4227400 4348800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 909610000 549130000 360480000 6122 1646 5707 32820;32821 39252 39252 1 FYFHDGVR Unmodified 1039.4876 0.48756462 84 O00410;O00410-2;O00410-3 IPO5 Importin-5 yes no 0 0 0 0 By MS/MS By MS/MS 4.89 1.73 1 2 2 2 2 4 5 39.486 39.64 3 0.00035158 13100 20211116_3441_TMUAki_TMT10x_S_F3 131.06 90.033 4725500 7070100 86257 8757500 6084000 5839100 4691800 5186600 5100200 4893600 6188400 4400500 6603400 489650 8771200 5803800 6113800 4844500 5297500 5209400 4791400 5936000 8 8 7 8 8 8 8 8 8 8 8 1637300 2408700 29357 2988900 3317000 3199300 1993800 1621800 1742700 1637200 1991800 1524700 2249800 185090 3011300 3148900 3210800 2083900 1729000 1792700 1598300 1913700 3 3 2 3 3 3 3 3 3 3 3 3088100 4661300 56900 5768600 2767000 2639800 2698000 3564800 3357500 3256400 4196600 2875800 4353700 304560 5759900 2654900 2903000 2760700 3568500 3416600 3193100 4022300 5 5 5 5 5 5 5 5 5 5 5 889020000 567420000 321600000 6123 84 5708 32822;32823;32824;32825;32826;32827;32828;32829;32830 39253;39254;39255;39256;39257;39258;39259;39260;39261 39258 9 FYFLEAYNAK Unmodified 1264.6128 0.61282471 811 P26358;P26358-2;P26358-3 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 0 0 0 0 By MS/MS By MS/MS 5 3 1 1 1 1 76.832 76.816 2 6.273E-10 25192 20211116_3440_TMUAki_TMT10x_S_F2 170.18 131.03 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6124 811 5709 32831;32832 39262;39263 39263 2 FYGDEEK Unmodified 886.37086 0.37086311 832 P27797 CALR Calreticulin yes yes 0 0 0 0 By MS/MS 3 0 1 1 39.057 39.1 2 0.020632 11493 20211116_3430_TMUAki_TMT10x_P_F3 87.323 26.535 436260 663780 932.38 656540 656790 568440 383600 227420 273350 228810 430800 406200 619350 40126 668970 622950 576860 399980 248480 288500 223410 410700 1 1 1 1 1 1 1 1 1 1 1 436260 663780 932.38 656540 656790 568440 383600 227420 273350 228810 430800 406200 619350 40126 668970 622950 576860 399980 248480 288500 223410 410700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18058000 18058000 0 6125 832 5710 32833 39264 39264 1 FYGELALKK Unmodified 1067.6015 0.60153174 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 55.563 55.413 3 0.024225 16210 20211116_3428_TMUAki_TMT10x_P_F1 57.267 40.596 5555800 9601300 25262 10082000 9343800 10465000 7114900 7825100 8077900 7617900 8140800 5173200 8960900 537210 10257000 8904800 10578000 7363300 8083100 8178000 7448500 7851100 2 2 2 2 2 2 2 2 2 2 2 3429100 5959300 9798.4 6501800 7593300 8385200 5097600 4967100 5271100 4903300 5264400 3192900 5562700 351750 6622700 7218700 8349300 5306600 5220800 5354600 4791400 5078600 1 1 1 1 1 1 1 1 1 1 1 2126600 3642100 15463 3580100 1750500 2079400 2017300 2858100 2806800 2714600 2876300 1980200 3398200 185460 3634300 1686100 2228400 2056700 2862300 2823400 2657100 2772500 1 1 1 1 1 1 1 1 1 1 1 638970000 456440000 182530000 6126 1433 5711 32834;32835;32836 39265;39266;39267 39265 3 FYGPAGPYGIFAGR Unmodified 1471.7248 0.72483478 172 O15173;O15173-2 PGRMC2 Membrane-associated progesterone receptor component 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.86 0.833 3 2 2 3 4 73.161 73.116 2 7.9337E-33 24042 20211116_3433_TMUAki_TMT10x_P_F5 223.19 173.06 32578000 55280000 450970 51141000 38981000 63989000 41873000 40524000 37832000 41681000 43952000 30336000 51567000 3109600 52657000 37470000 63868000 42197000 42420000 38882000 40660000 42209000 9 9 6 9 9 9 9 9 9 9 9 25747000 43487000 450970 39950000 28384000 55308000 32833000 32116000 29686000 33259000 34327000 23977000 40565000 2570900 41235000 27353000 54876000 32974000 33858000 30503000 32435000 32970000 7 7 6 7 7 7 7 7 7 7 7 6831000 11794000 0 11191000 10597000 8680600 9039800 8407800 8146400 8422300 9625100 6359700 11002000 538730 11422000 10117000 8992000 9223200 8562600 8379100 8225100 9239200 2 2 0 2 2 2 2 2 2 2 2 4078600000 2056400000 2022200000 6127 172 5712 32837;32838;32839;32840;32841;32842;32843 39268;39269;39270;39271;39272;39273;39274;39275;39276;39277;39278 39273 11 FYGPEGPYGVFAGR Unmodified 1515.7147 0.71466402 77 O00264 PGRMC1 Membrane-associated progesterone receptor component 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.25 3.31 3 1 4 3 5 68.101 68.097 2;3 2.8637E-37 21016 20211116_3447_TMUAki_TMT10x_S_F8 248.88 232.68 39812000 67548000 229970 67669000 48191000 51391000 48348000 35282000 37051000 40663000 49156000 37068000 63030000 3281300 68781000 46203000 52996000 48684000 36846000 38617000 39491000 47045000 12 12 4 12 12 12 12 12 12 12 12 14215000 23916000 79240 24045000 14364000 24416000 16552000 12512000 14304000 15166000 17506000 13236000 22316000 1133100 24527000 13825000 24583000 16605000 13401000 14764000 14703000 16788000 4 4 1 4 4 4 4 4 4 4 4 25597000 43632000 150730 43623000 33826000 26975000 31796000 22770000 22747000 25496000 31651000 23833000 40713000 2148200 44255000 32378000 28413000 32078000 23445000 23853000 24789000 30256000 8 8 3 8 8 8 8 8 8 8 8 6853700000 3296800000 3556900000 6128 77 5713 32844;32845;32846;32847;32848;32849;32850;32851 39279;39280;39281;39282;39283;39284;39285;39286;39287;39288;39289;39290 39288 12 FYGPQVNNISHTK Unmodified 1503.747 0.74702678 83 O00401 WASL Neural Wiskott-Aldrich syndrome protein yes yes 0 0 0 0 By MS/MS By matching 1 0 2 1 1 41.914 41.823 3 6.3369E-05 10718 20211116_3428_TMUAki_TMT10x_P_F1 95.273 81.611 832960 1249000 17388 1565300 2112200 2625200 1245800 1381000 1613800 1311900 1071500 775700 1166700 103180 1590400 2004600 2581100 1320300 1464900 1606400 1284100 1050400 1 1 1 1 1 1 1 1 1 1 1 832960 1249000 17388 1565300 2112200 2625200 1245800 1381000 1613800 1311900 1071500 775700 1166700 103180 1590400 2004600 2581100 1320300 1464900 1606400 1284100 1050400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 81881000 54640000 27241000 6129 83 5714 32852;32853 39291 39291 1 FYGRDYEYNR Unmodified 1381.6051 0.60511357 1874 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.457 35.51 3 3.2066E-05 7646 20211116_3444_TMUAki_TMT10x_S_F5 130.63 120.74 1927400 2918200 0 3608600 3659900 2890600 2109200 2114000 2528000 1872400 2562300 1794500 2725600 169340 3621900 3469300 2971600 2233500 2181400 2554700 1838600 2470700 2 2 0 2 2 2 2 2 2 2 2 1230600 1832300 0 2334800 2930200 2440800 1501500 1312700 1645900 1233700 1589300 1145800 1711600 118360 2348000 2773300 2454600 1602300 1389200 1666100 1208100 1534900 1 1 0 1 1 1 1 1 1 1 1 696760 1085900 0 1273800 729600 449790 607680 801380 882040 638710 972960 648690 1014000 50977 1273900 696040 516940 631270 792170 888540 630500 935760 1 1 0 1 1 1 1 1 1 1 1 140360000 114470000 25892000 6130 1874 5715 32854;32855;32856 39292;39293 39293 2 FYHEELNAPIRR Unmodified 1543.7896 0.7895603 3030 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.629 35.683 4 5.0099E-12 9014 20211116_3433_TMUAki_TMT10x_P_F5 167.11 134.38 617120 932370 1514 1029800 1000700 959190 671910 706160 734650 614730 873790 574600 870360 57412 1042600 951350 975830 700680 728010 749570 604140 838610 2 2 1 2 2 2 2 2 2 2 2 390720 571080 1514 625710 770570 748730 423670 421920 448930 379310 545130 363810 533080 39125 636310 730230 747830 448670 444190 459010 372210 522890 1 1 1 1 1 1 1 1 1 1 1 226390 361290 0 404080 230170 210460 248240 284250 285720 235420 328660 210790 337280 18287 406310 221120 228000 252020 283820 290550 231930 315710 1 1 0 1 1 1 1 1 1 1 1 136920000 109330000 27589000 6131 3030 5716 32857;32858;32859 39294;39295 39294 2 FYIDPYK Unmodified 944.46437 0.46436956 3011 Q9NY12;Q9NY12-2 GAR1 H/ACA ribonucleoprotein complex subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 60.978 61.389 2 0.016327 19924 20211116_3435_TMUAki_TMT10x_P_F7 91.906 54.348 23098000 37023000 129820 40636000 36293000 40308000 27152000 29466000 30620000 29107000 31169000 21507000 34560000 2212700 41196000 34577000 40840000 28127000 30496000 31019000 28443000 30051000 3 3 2 3 3 3 3 3 3 3 3 13873000 22184000 110230 24176000 26907000 32199000 19292000 17782000 18647000 18137000 18836000 12918000 20708000 1427500 24642000 25614000 31983000 19947000 18818000 19005000 17699000 18165000 2 2 1 2 2 2 2 2 2 2 2 9224100 14838000 19595 16461000 9386000 8109500 7859900 11684000 11973000 10970000 12332000 8588700 13852000 785270 16553000 8962600 8856900 8179800 11678000 12014000 10743000 11886000 1 1 1 1 1 1 1 1 1 1 1 2018300000 1222000000 796310000 6132 3011 5717 32860;32861;32862 39296;39297;39298 39297 3 FYKDVLEVGELAK Unmodified 1509.8079 0.80789571 2762 Q9GZZ1 NAA50 N-alpha-acetyltransferase 50 yes yes 0 0 0 1 By MS/MS By MS/MS 6.17 1.07 2 2 1 1 4 2 74.107 74.144 3 0.00013472 23361 20211116_3434_TMUAki_TMT10x_P_F6 91.657 48.113 40010000 66887000 793900 57736000 47956000 66246000 50960000 43820000 42124000 45488000 52310000 37259000 62379000 4155600 59674000 46105000 66458000 51260000 45735000 43602000 44357000 50146000 6 6 5 6 6 6 6 6 6 6 6 25012000 40753000 547860 34118000 28693000 50085000 34366000 26845000 25504000 26977000 31733000 23292000 38002000 2635800 35513000 27688000 49516000 34288000 28471000 26555000 26341000 30419000 4 4 4 4 4 4 4 4 4 4 4 14998000 26134000 246030 23618000 19263000 16162000 16594000 16975000 16619000 18511000 20577000 13966000 24376000 1519800 24161000 18417000 16942000 16972000 17264000 17047000 18016000 19727000 2 2 1 2 2 2 2 2 2 2 2 2464700000 1872000000 592710000 6133 2762 5718 32863;32864;32865;32866;32867;32868 39299;39300;39301;39302;39303;39304 39301 6 FYPEDVAEELIQDITQK Unmodified 2036.9943 0.99425251 682 P15311 EZR Ezrin yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 83.662 83.658 3 0.00017974 27931 20211116_3440_TMUAki_TMT10x_S_F2 75.463 58.181 1188000 1863200 4812.3 1747300 1324700 1503700 1420800 1165100 1172500 1238500 1397200 1106100 1738100 99946 1787000 1272500 1539300 1428400 1203800 1211700 1206500 1340800 2 2 1 2 2 2 2 2 2 2 2 378620 547470 0 567990 310870 626310 393490 348860 375690 388930 455290 352500 510930 25496 578860 299830 628210 394260 369900 385810 378200 436740 1 1 0 1 1 1 1 1 1 1 1 809360 1315700 4812.3 1179300 1013800 877370 1027300 816190 796810 849550 941860 753630 1227200 74450 1208200 972700 911050 1034200 833930 825850 828340 904090 1 1 1 1 1 1 1 1 1 1 1 95128000 30156000 64972000 6134 682 5719 32869;32870 39305;39306 39306 2 FYPGQAPSLAENFAEHVLR Unmodified 2145.0643 0.064338176 3227 Q9Y276 BCS1L Mitochondrial chaperone BCS1 yes yes 0 0 0 0 By MS/MS 8 0 2 2 77.724 77.731 3 1.514E-31 25452 20211116_3436_TMUAki_TMT10x_P_F8 185.25 172.15 2745800 4315200 0 3506100 2610700 4966700 2861500 3087800 2746400 2614400 3317100 2556200 4023500 173800 3655800 2506200 4927400 2885900 3220100 2819300 2572900 3182300 1 1 0 1 1 1 1 1 1 1 1 2745800 4315200 0 3506100 2610700 4966700 2861500 3087800 2746400 2614400 3317100 2556200 4023500 173800 3655800 2506200 4927400 2885900 3220100 2819300 2572900 3182300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 953730000 953730000 0 6135 3227 5720 32871;32872 39307;39308 39307 2 FYPHTHNMDGFFIAK Oxidation (M) 1839.8403 0.84027524 1042 P46087;P46087-2;P46087-4;P46087-3 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 0 0 1 0 By MS/MS By MS/MS 4.5 3.5 1 1 1 1 50.865 50.773 4 1.5075E-07 14376 20211116_3436_TMUAki_TMT10x_P_F8 119.88 109.68 4659100 8417900 71031 8076000 7626500 8178400 5400700 7167600 6391200 6499500 6916600 4338100 7853500 435470 8264500 7257200 8302600 5625200 7318500 6477200 6375300 6655900 2 2 1 2 2 2 2 2 2 2 2 2078900 3633200 71031 3942500 4359600 5894100 2958600 3369500 3176500 3274500 3139600 1936200 3391400 270490 4029300 4149200 5827400 3081100 3550500 3220700 3202000 3029800 1 1 1 1 1 1 1 1 1 1 1 2580200 4784600 0 4133500 3267000 2284200 2442000 3798000 3214700 3225000 3777000 2402000 4462100 164980 4235200 3108000 2475100 2544100 3768000 3256500 3173300 3626100 1 1 0 1 1 1 1 1 1 1 1 732500000 561900000 170600000 6136 1042 5721 32873;32874 39309;39310 39309 1349 2 FYPPKVELFFK Unmodified 1413.7697 0.76965971 767 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 77.142 77.153 3 1.9398E-11 25955 20211116_3442_TMUAki_TMT10x_S_F4 126.76 107.98 4754700 8059300 77414 8298000 5942900 5019600 5666500 3904500 3712800 4454500 5619900 4427700 7521100 482990 8399400 5696000 5290800 5701700 4042600 3930300 4327900 5362300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4754700 8059300 77414 8298000 5942900 5019600 5666500 3904500 3712800 4454500 5619900 4427700 7521100 482990 8399400 5696000 5290800 5701700 4042600 3930300 4327900 5362300 1 1 1 1 1 1 1 1 1 1 1 587230000 0 587230000 6137 767 5722 32875;32876 39311;39312 39311 2 FYSKLDQEDALLGSYPVDDGCR Unmodified 2547.1588 0.15876843 2570 Q99426;Q99426-2 TBCB Tubulin-folding cofactor B yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 70.492 70.416 3 1.2895E-14 23266 20211116_3442_TMUAki_TMT10x_S_F4 136.92 119.39 2601200 4426400 44668 4885800 3127700 2294600 2851300 1819000 1595600 2020500 2978100 2422300 4132000 264660 4913200 2994700 2486700 2867800 1879500 1727200 1965000 2830100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2601200 4426400 44668 4885800 3127700 2294600 2851300 1819000 1595600 2020500 2978100 2422300 4132000 264660 4913200 2994700 2486700 2867800 1879500 1727200 1965000 2830100 1 1 1 1 1 1 1 1 1 1 1 1120800000 0 1120800000 6138 2570 5723 32877;32878 39313 39313 1 FYSQAIELNPSNAIYYGNR Unmodified 2219.0647 0.064732107 1197 P53041 PPP5C Serine/threonine-protein phosphatase 5 yes yes 0 0 0 0 By MS/MS By MS/MS 5.2 3.43 2 3 3 2 72.932 72.891 2;3 1.0683E-79 23517 20211116_3436_TMUAki_TMT10x_P_F8 307.15 288.84 14928000 26093000 291010 24046000 17669000 21559000 19549000 17716000 15562000 16403000 19623000 13902000 24340000 1497500 24638000 17004000 22030000 19607000 18167000 16150000 16074000 18804000 8 8 7 8 8 8 8 8 8 8 8 4160300 6821100 126330 6271100 4444400 8679800 4535200 5249500 4451700 4614500 5120800 3874600 6362700 466630 6472500 4271400 8616800 4592900 5491400 4556200 4532900 4919100 3 3 3 3 3 3 3 3 3 3 3 10768000 19272000 164680 17775000 13225000 12879000 15013000 12467000 11110000 11788000 14502000 10027000 17978000 1030900 18166000 12732000 13413000 15014000 12676000 11594000 11541000 13885000 5 5 4 5 5 5 5 5 5 5 5 3472600000 1981200000 1491500000 6139 1197 5724 32879;32880;32881;32882;32883 39314;39315;39316;39317;39318;39319;39320;39321 39316 8 FYSSEPNNLREELTR Unmodified 1853.8908 0.89079049 2869 Q9HCM4;Q9HCM4-2;Q9HCM4-4;Q9HCM4-3 EPB41L5 Band 4.1-like protein 5 yes no 0 0 0 1 By MS/MS 4 0 1 1 49.368 49.522 3 0.00010202 14629 20211116_3442_TMUAki_TMT10x_S_F4 85.493 64.756 1809700 3772700 64143 4072300 1628000 1821200 1705100 2940100 3291900 2393800 3143000 1685500 3521500 207270 4099600 1566900 2019300 1774700 2916500 3274200 2360500 3036600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1809700 3772700 64143 4072300 1628000 1821200 1705100 2940100 3291900 2393800 3143000 1685500 3521500 207270 4099600 1566900 2019300 1774700 2916500 3274200 2360500 3036600 1 1 1 1 1 1 1 1 1 1 1 165490000 0 165490000 6140 2869 5725 32884 39322 39322 1 FYTKPPQCVDIPADLR Unmodified 1918.9611 0.96111866 2193 Q8N474 SFRP1 Secreted frizzled-related protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 59.162 59.247 3 4.1369E-08 17371 20211116_3447_TMUAki_TMT10x_S_F8 119.4 109.48 9429000 15977000 52260 16123000 10442000 15328000 10076000 10903000 10908000 10088000 11605000 8779500 14909000 814520 16426000 10004000 15565000 10266000 11285000 11086000 9885800 11173000 3 3 2 3 3 3 3 3 3 3 3 6136700 10124000 52260 10204000 6119100 11374000 6529600 7203900 7171200 6954300 7543200 5714200 9446900 557230 10422000 5880700 11421000 6621600 7527400 7280600 6802200 7265200 2 2 2 2 2 2 2 2 2 2 2 3292400 5852900 0 5918900 4322800 3954800 3546500 3699300 3737300 3133400 4061500 3065300 5461700 257290 6004300 4123400 4144300 3643900 3757200 3805200 3083500 3907900 1 1 0 1 1 1 1 1 1 1 1 604300000 348270000 256030000 6141 2193 5726 32885;32886 39323;39324;39325 39325 3 FYTLIPHDFGMK Oxidation (M) 1483.717 0.71697221 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 1 0 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 67.829 67.709 3 3.7144E-05 21357 20211116_3436_TMUAki_TMT10x_P_F8 99.215 80.851 32909000 57956000 401490 51727000 36524000 59963000 43918000 50817000 53238000 53143000 49140000 30643000 54055000 2996900 53333000 35221000 60372000 44450000 52198000 53607000 51806000 47530000 9 9 7 9 9 9 9 9 9 9 9 13389000 22337000 103050 20287000 15580000 32045000 18462000 19406000 20322000 20907000 18615000 12466000 20836000 1180000 21017000 15014000 31636000 18634000 20414000 20533000 20357000 18010000 4 4 3 4 4 4 4 4 4 4 4 19521000 35618000 298440 31439000 20944000 27918000 25456000 31411000 32915000 32236000 30524000 18177000 33220000 1816900 32316000 20207000 28737000 25816000 31785000 33074000 31449000 29520000 5 5 4 5 5 5 5 5 5 5 5 6130200000 3431900000 2698300000 6142 586 5727 32887;32888;32889;32890;32891;32892 39326;39327;39328;39329;39330;39331;39332;39333;39334 39329 556 9 FYTLIPHDFGMK Unmodified 1467.7221 0.72205759 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 74.453 74.301 3 2.0898E-07 25347 20211116_3429_TMUAki_TMT10x_P_F2 126.19 111.22 17618000 28084000 109340 29832000 16166000 20349000 22637000 8487500 6953300 10693000 18183000 16405000 26212000 1513400 30169000 15668000 21049000 22137000 9294100 8158500 10352000 17193000 5 5 4 5 5 5 5 5 5 5 5 8514200 13042000 25751 13830000 8650400 11608000 10661000 3841100 3265100 4778200 8374800 7927700 12172000 731790 14020000 8346500 11788000 10480000 4325400 3826600 4628100 7920700 2 2 2 2 2 2 2 2 2 2 2 9104200 15042000 83593 16002000 7515700 8740700 11975000 4646400 3688200 5914500 9807800 8477300 14039000 781640 16148000 7321700 9260300 11657000 4968700 4331900 5724200 9271800 3 3 2 3 3 3 3 3 3 3 3 2022800000 1157000000 865770000 6143 586 5727 32893;32894;32895;32896;32897 39335;39336;39337;39338;39339;39340 39336 6 FYVGHDP Unmodified 833.3708 0.37080353 1260 P56556 NDUFA6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 39.528 39.653 2 0.058676 11689 20211116_3430_TMUAki_TMT10x_P_F3 64.398 56.985 718920 1230800 46179 1402600 847470 790560 806090 692140 724870 605120 928700 669730 1149200 104440 1409600 814350 840910 817300 706080 748210 594570 889570 2 2 2 2 2 2 2 2 2 2 2 170670 295970 6845.6 344100 333750 290630 215580 151390 151730 126720 212890 158960 276350 22814 346840 317460 296240 222870 160210 159320 124780 203470 1 1 1 1 1 1 1 1 1 1 1 548250 934880 39333 1058500 513720 499930 590510 540750 573140 478390 715810 510770 872800 81628 1062800 496890 544670 594430 545870 588890 469790 686100 1 1 1 1 1 1 1 1 1 1 1 27553000 8477600 19075000 6144 1260 5728 32898;32899 39341 39341 1 FYVHNDIFR Unmodified 1209.5931 0.59309232 1616 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.17 2.41 1 1 2 2 3 3 50.487 50.645 3 7.6778E-08 15538 20211116_3435_TMUAki_TMT10x_P_F7 201.58 160.04 7553200 13878000 65134 13870000 13902000 15696000 9280700 13425000 12694000 11311000 10833000 7033200 12950000 760650 14177000 13217000 15827000 9761100 13701000 12699000 11134000 10507000 6 6 4 6 6 6 6 6 6 6 6 3782900 7243700 37716 7058400 9768600 12592000 6196300 7594100 6964300 6310900 5515900 3522500 6758400 428640 7296500 9278800 12375000 6495700 7935000 7000000 6216500 5365800 3 3 2 3 3 3 3 3 3 3 3 3770300 6634700 27418 6811200 4133600 3104000 3084400 5830800 5729800 5000400 5316700 3510600 6191600 332010 6880600 3938100 3452000 3265400 5765900 5698700 4917900 5141600 3 3 2 3 3 3 3 3 3 3 3 3669900000 2031000000 1638900000 6145 1616 5729 32900;32901;32902;32903;32904;32905 39342;39343;39344;39345;39346;39347 39343 6 FYVHNDMFR Oxidation (M) 1243.5444 0.54442757 3188 Q9UN86;Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 yes no 0 0 1 0 By matching By MS/MS 5.5 0.5 1 1 1 1 38.464 38.549 3 0.02601 9155 20211116_3445_TMUAki_TMT10x_S_F6 51.488 46.53 319020 534970 20655 579300 355230 312850 390560 358810 380170 332850 450110 297200 499350 46207 583870 342750 336180 393990 361720 389690 326140 432040 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 319020 534970 20655 579300 355230 312850 390560 358810 380170 332850 450110 297200 499350 46207 583870 342750 336180 393990 361720 389690 326140 432040 1 1 1 1 1 1 1 1 1 1 1 32659000 18400000 14259000 6146 3188 5730 32906;32907 39348 39348 3180 1 FYVHNDMFR Unmodified 1227.5495 0.54951295 3188 Q9UN86;Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 yes no 0 0 0 0 By MS/MS 8 0 2 2 47.908 47.815 3 6.1497E-05 12781 20211116_3447_TMUAki_TMT10x_S_F8 99.815 85.149 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6147 3188 5730 32908;32909 39349;39350 39350 2 FYVPPTQEDGVDPVEAFAQNVLSK Unmodified 2649.2962 0.29624819 1550 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.1 2.02 1 3 4 4 5 4 6 4 16 15 81.308 81.306 2;3;4 8.5808E-39 26308 20211116_3447_TMUAki_TMT10x_S_F8 197.68 185.89 161520000 268320000 914310 250940000 198040000 235450000 208710000 155350000 153170000 167320000 199350000 150390000 250310000 12665000 256990000 190110000 239010000 209420000 162350000 159890000 162920000 190880000 56 56 20 56 56 56 56 56 56 56 56 74756000 117970000 278130 111710000 70841000 131240000 84967000 70829000 69841000 76039000 89649000 69601000 110060000 5063700 114700000 68249000 131140000 84979000 75219000 72416000 74049000 85868000 27 27 8 27 27 27 27 27 27 27 27 86769000 150350000 636180 139230000 127190000 104210000 123740000 84524000 83327000 91284000 109700000 80789000 140250000 7601500 142300000 121860000 107880000 124440000 87134000 87475000 88874000 105010000 29 29 12 29 29 29 29 29 29 29 29 56049000000 26720000000 29329000000 6148 1550 5731 32910;32911;32912;32913;32914;32915;32916;32917;32918;32919;32920;32921;32922;32923;32924;32925;32926;32927;32928;32929;32930;32931;32932;32933;32934;32935;32936;32937;32938;32939;32940 39351;39352;39353;39354;39355;39356;39357;39358;39359;39360;39361;39362;39363;39364;39365;39366;39367;39368;39369;39370;39371;39372;39373;39374;39375;39376;39377;39378;39379;39380;39381;39382;39383;39384;39385;39386;39387;39388;39389;39390;39391;39392;39393;39394;39395;39396;39397;39398;39399;39400;39401;39402;39403;39404;39405;39406;39407 39404 57 GAAAAAAASGAAGGGGGGAGAGAPGGGR Unmodified 1951.9209 0.92086184 1964 Q68E01;Q68E01-2 INTS3 Integrator complex subunit 3 yes no 0 0 0 0 By matching By MS/MS 6.5 0.5 1 1 1 1 32.107 32.345 3 5.6876E-18 8934 20211116_3446_TMUAki_TMT10x_S_F7 126.97 115.54 4174.9 11473 0 9258.6 5198.7 2975.2 3540 3412.7 5299.5 5078.4 10641 3887.2 10697 0 9507.7 4943 3428.3 3731.9 3497.6 5503.8 4891.2 10100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4174.9 11473 0 9258.6 5198.7 2975.2 3540 3412.7 5299.5 5078.4 10641 3887.2 10697 0 9507.7 4943 3428.3 3731.9 3497.6 5503.8 4891.2 10100 1 1 0 1 1 1 1 1 1 1 1 2639800 486080 2153700 6149 1964 5732 32941;32942 39408 39408 1 GAAFGFNVIATR Unmodified 1222.6459 0.64585618 1953 Q5VYK3 ECM29 Proteasome-associated protein ECM29 homolog yes yes 0 0 0 0 By MS/MS 3 0 1 1 61.964 61.528 2 1.5381E-05 21846 20211116_3441_TMUAki_TMT10x_S_F3 103.31 81.319 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6150 1953 5733 32943 39409 39409 1 GAAGALLVYDITR Unmodified 1318.7245 0.72450043 1287;2297 P61019;P61019-2;Q8WUD1;Q8WUD1-2 RAB2A;RAB2B Ras-related protein Rab-2A;Ras-related protein Rab-2B no no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 67.752 67.97 2 1.0004E-22 22639 20211116_3435_TMUAki_TMT10x_P_F7 211.64 182.22 20268000 34944000 373970 32020000 23798000 35662000 25979000 23096000 20704000 23291000 26259000 18875000 32596000 2078300 32927000 22896000 35823000 26074000 24122000 21491000 22739000 25160000 5 5 5 5 5 5 5 5 5 5 5 12338000 21293000 215040 19106000 14389000 26384000 16032000 14075000 12698000 14555000 16084000 11490000 19861000 1252000 19754000 13851000 26153000 16073000 14946000 13184000 14195000 15411000 3 3 3 3 3 3 3 3 3 3 3 7930200 13651000 158930 12915000 9409400 9277900 9946800 9021300 8006200 8735600 10175000 7385000 12735000 826300 13173000 9045300 9670300 10001000 9176600 8306800 8543500 9748500 2 2 2 2 2 2 2 2 2 2 2 2844800000 1400300000 1444500000 6151 1287;2297 5734 32944;32945;32946;32947 39410;39411;39412;39413;39414 39410 5 GAAGALLVYDITRR Unmodified 1474.8256 0.82561145 1287;2297 P61019;P61019-2;Q8WUD1;Q8WUD1-2 RAB2A;RAB2B Ras-related protein Rab-2A;Ras-related protein Rab-2B no no 0 0 0 1 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 59.503 59.259 3 8.9029E-34 19889 20211116_3430_TMUAki_TMT10x_P_F3 235.21 190.59 54002000 86137000 328880 85530000 71845000 86604000 67321000 57608000 54392000 60640000 69229000 50278000 80373000 4250300 87313000 68743000 87509000 68123000 60126000 56426000 59099000 66323000 10 10 7 10 10 10 10 10 10 10 10 29748000 44479000 182330 44904000 42897000 60367000 40459000 29948000 28195000 33047000 35971000 27697000 41505000 2422900 46011000 41055000 59860000 40787000 32077000 29496000 32148000 34460000 5 5 4 5 5 5 5 5 5 5 5 24254000 41659000 146550 40625000 28948000 26238000 26862000 27660000 26197000 27593000 33257000 22581000 38868000 1827400 41302000 27688000 27648000 27336000 28049000 26930000 26951000 31863000 5 5 3 5 5 5 5 5 5 5 5 7151000000 3808900000 3342200000 6152 1287;2297 5735 32948;32949;32950;32951;32952;32953 39415;39416;39417;39418;39419;39420;39421;39422;39423;39424 39419 10 GAAGALMVYDITR Oxidation (M) 1352.6758 0.67583567 1295 P61106 RAB14 Ras-related protein Rab-14 yes yes 0 0 1 0 By MS/MS 6 0 1 1 53.664 53.76 2 0.083456 14992 20211116_3434_TMUAki_TMT10x_P_F6 47.732 33.737 4219400 5228900 0 4918000 5511600 6960400 5231600 5655400 4264600 4410700 6263200 3928500 4878000 344940 5069700 5276200 6935500 5291300 5778600 4451700 4359000 5980100 1 1 0 1 1 1 1 1 1 1 1 4219400 5228900 0 4918000 5511600 6960400 5231600 5655400 4264600 4410700 6263200 3928500 4878000 344940 5069700 5276200 6935500 5291300 5778600 4451700 4359000 5980100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 211210000 211210000 0 6153 1295 5736 32954 39425 39425 1744 1 GAAGALMVYDITRR Oxidation (M) 1508.7769 0.7769467 1295 P61106 RAB14 Ras-related protein Rab-14 yes yes 0 0 1 1 By MS/MS By MS/MS 4 3.29 2 1 2 2 3 45.985 45.949 3 9.4025E-07 12333 20211116_3428_TMUAki_TMT10x_P_F1 116.03 99 6434900 10778000 17854 11375000 10062000 11879000 7314700 10241000 10769000 9288800 9766100 5991100 10059000 516270 11570000 9575600 12033000 7670200 10466000 10769000 9111100 9452000 5 5 2 5 5 5 5 5 5 5 5 3731200 5862100 13778 5916100 7161400 9213400 4530700 5981700 6142400 5058800 5077600 3473800 5470100 320310 6080900 6798100 9110000 4783200 6217300 6140600 4978700 4931100 2 2 1 2 2 2 2 2 2 2 2 2703700 4916000 4076.3 5458600 2900800 2665400 2783900 4259100 4627000 4230000 4688500 2517300 4589200 195960 5488600 2777500 2923400 2887000 4249100 4628700 4132400 4520900 3 3 1 3 3 3 3 3 3 3 3 1754800000 1052800000 702100000 6154 1295 5737 32955;32956;32957;32958;32959 39426;39427;39428;39429 39426 1744 4 GAAGALMVYDITRR Unmodified 1492.782 0.78203208 1295 P61106 RAB14 Ras-related protein Rab-14 yes yes 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 54.487 54.265 3 2.1329E-33 17330 20211116_3429_TMUAki_TMT10x_P_F2 231.06 192.97 7744100 12744000 127120 13852000 11093000 13263000 9478100 10450000 8428200 8374500 10409000 7211500 11896000 807410 14045000 10604000 13485000 9665900 10705000 8690400 8264500 9979700 3 3 3 3 3 3 3 3 3 3 3 5251700 8269800 116930 9000900 8187000 11027000 7020200 6871500 5584300 5430100 6817200 4890700 7719300 585480 9161000 7827800 11015000 7137400 7153000 5787700 5362700 6538100 2 2 2 2 2 2 2 2 2 2 2 2492400 4474600 10191 4851500 2906000 2235900 2457900 3578600 2843800 2944400 3591700 2320800 4176700 221930 4883600 2775800 2469300 2528500 3551700 2902800 2901800 3441600 1 1 1 1 1 1 1 1 1 1 1 974040000 500470000 473570000 6155 1295 5737 32960;32961;32962 39430;39431;39432;39433 39431 4 GAAGRPLELSDFR Unmodified 1387.7208 0.72081203 1007 P42167;P42167-2 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes no 0 0 0 1 By MS/MS By MS/MS 5.42 1.26 1 2 3 3 3 8 4 43.414 43.584 2;3 1.5419E-23 12067 20211116_3433_TMUAki_TMT10x_P_F5 187.22 151.92 48161000 79402000 1268500 98069000 97238000 104110000 61830000 85764000 85805000 75913000 81325000 44849000 74160000 5522000 98819000 92401000 105280000 65311000 87830000 86084000 74546000 78590000 13 13 10 13 13 13 13 13 13 13 13 28991000 48610000 949150 61966000 79968000 88757000 47813000 54061000 54506000 48939000 51811000 26998000 45408000 3742200 62673000 75910000 87988000 50387000 56564000 55062000 48007000 50064000 5 5 4 5 5 5 5 5 5 5 5 19170000 30791000 319370 36103000 17269000 15357000 14018000 31703000 31299000 26974000 29514000 17851000 28752000 1779800 36146000 16491000 17292000 14924000 31267000 31022000 26539000 28526000 8 8 6 8 8 8 8 8 8 8 8 16612000000 9340100000 7271500000 6156 1007 5738 32963;32964;32965;32966;32967;32968;32969;32970;32971;32972;32973;32974 39434;39435;39436;39437;39438;39439;39440;39441;39442;39443;39444;39445;39446;39447;39448;39449;39450 39437 17 GAAIPAK Unmodified 626.37516 0.37516062 729 P19338 NCL Nucleolin yes yes 0 0 0 0 By MS/MS By MS/MS 5.75 0.829 2 1 1 3 1 33.26 33.36 2 0.014385 6568 20211116_3444_TMUAki_TMT10x_S_F5 88.627 36.396 4164200 6948200 9800.4 6517800 7958700 8134600 5140700 3492600 4075500 3695100 5348300 3877200 6481800 380060 6703900 7559100 8083000 5328800 3791300 4237900 3600500 5119900 8 8 5 8 8 8 8 8 8 8 8 4164200 6948200 9800.4 6517800 7958700 8134600 5140700 3492600 4075500 3695100 5348300 3877200 6481800 380060 6703900 7559100 8083000 5328800 3791300 4237900 3600500 5119900 8 8 5 8 8 8 8 8 8 8 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 90269000 90269000 0 6157 729 5739 32975;32976;32977;32978 39451;39452 39452 2 GAALITAVGVR Unmodified 1026.6186 0.61857879 730 P19367;P19367-4;P19367-2;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 By MS/MS 2 0 1 1 50.678 50.529 2 4.1241E-11 14511 20211116_3440_TMUAki_TMT10x_S_F2 127.68 107.89 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6158 730 5740 32979 39453 39453 1 GAAMVTAVAYR Unmodified 1108.5699 0.56991404 730;1188 P19367;P19367-4;P19367-2;P19367-3;P52789 HK1;HK2 Hexokinase-1;Hexokinase-2 no no 0 0 0 0 By MS/MS 8 0 1 1 43.69 43.865 2 1.4733E-07 11618 20211116_3436_TMUAki_TMT10x_P_F8 120.99 100.43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6159 730;1188 5741 32980 39454 39454 1 GAAPNVVYTYTGK Unmodified 1339.6772 0.67721588 1856 Q16630;Q16630-2;Q16630-3 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes no 0 0 0 0 By MS/MS 8 0 1 1 51.339 51.426 3 3.5002E-06 14717 20211116_3436_TMUAki_TMT10x_P_F8 104.59 89.903 3594900 6193700 102130 6790500 8603200 9661600 5483900 5903400 6196200 5080600 5852700 3348000 5781600 463290 6928200 8177000 9581100 5747700 6167200 6260200 4995900 5656500 2 2 1 2 2 2 2 2 2 2 2 3594900 6193700 102130 6790500 8603200 9661600 5483900 5903400 6196200 5080600 5852700 3348000 5781600 463290 6928200 8177000 9581100 5747700 6167200 6260200 4995900 5656500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 262030000 262030000 0 6160 1856 5742 32981 39455;39456 39455 2 GAAPNVVYTYTGKR Unmodified 1495.7783 0.77832691 1856 Q16630;Q16630-2;Q16630-3 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 41.469 41.525 3 2.4436E-26 12192 20211116_3429_TMUAki_TMT10x_P_F2 194.85 174.07 1838600 2846800 12282 3964900 1844900 1427400 1551100 3060400 3547200 2322300 3316900 1712000 2660600 163960 3927900 1762300 1647400 1650500 3007100 3513100 2298500 3206800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1838600 2846800 12282 3964900 1844900 1427400 1551100 3060400 3547200 2322300 3316900 1712000 2660600 163960 3927900 1762300 1647400 1650500 3007100 3513100 2298500 3206800 2 2 2 2 2 2 2 2 2 2 2 106700000 0 106700000 6161 1856 5743 32982;32983 39457;39458;39459 39457 3 GAAVDGGKLDVGNAEVKLEEENR Unmodified 2369.1823 0.18228106 1157 P51572-2;P51572 BCAP31 B-cell receptor-associated protein 31 yes no 0 0 0 2 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 51.91 51.771 4 2.0732E-20 17836 20211116_3441_TMUAki_TMT10x_S_F3 144.26 132.45 10311000 17420000 56889 17720000 14583000 14906000 10614000 15391000 14438000 12323000 14776000 9600800 16256000 942090 18014000 13885000 15370000 11092000 15532000 14533000 12162000 14243000 3 3 2 3 3 3 3 3 3 3 3 4451000 7335900 40761 7878800 6478600 9491600 5620000 6941700 6412300 5469400 6563800 4144700 6847200 435410 8023500 6192900 9512600 5770100 7142400 6494100 5402300 6327200 1 1 1 1 1 1 1 1 1 1 1 5860000 10085000 16128 9841600 8104300 5414300 4993800 8449200 8025600 6853900 8211800 5456200 9409000 506680 9991000 7691900 5857000 5321900 8389600 8038600 6759600 7915900 2 2 1 2 2 2 2 2 2 2 2 1370300000 292180000 1078100000 6162 1157 5744 32984;32985;32986 39460;39461;39462 39461 3 GACLLPK Unmodified 757.41565 0.41564523 38 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 43.484 43.788 2 0.0026578 12914 20211116_3435_TMUAki_TMT10x_P_F7 123.34 63.727 + 9456000 13575000 11691 12824000 16068000 13869000 12559000 12804000 14070000 11408000 12756000 8804300 12664000 844910 13151000 15317000 14041000 12969000 13030000 14201000 11199000 12346000 4 4 1 4 4 4 4 4 4 4 4 6189800 8687000 11691 7950300 12466000 11706000 9458000 8644100 9602300 7752100 8249900 5763200 8103100 583460 8218800 11877000 11625000 9755500 8916500 9714400 7607800 8000200 2 2 1 2 2 2 2 2 2 2 2 3266200 4888300 0 4873400 3601800 2163600 3101000 4160200 4467600 3656200 4506000 3041100 4561300 261450 4932200 3440100 2416100 3214000 4114000 4486500 3591600 4345600 2 2 0 2 2 2 2 2 2 2 2 870790000 635820000 234980000 6163 38 5745 32987;32988;32989;32990 39463;39464;39465;39466 39463 4 GADCCVLVFDVTAPNTFK Unmodified 2012.9336 0.93358328 1151 P51149 RAB7A Ras-related protein Rab-7a yes yes 0 0 0 0 By MS/MS By MS/MS 6.33 0.745 1 2 3 3 3 77.45 77.476 2;3 7.4771E-17 27210 20211116_3446_TMUAki_TMT10x_S_F7 141.58 124.95 35146000 60555000 633830 49677000 42129000 62489000 40655000 38892000 33252000 37881000 44519000 32728000 56464000 3540100 51639000 40392000 62339000 41086000 40703000 34552000 37038000 42597000 7 7 6 7 7 7 7 7 7 7 7 22266000 37993000 598010 30578000 24877000 47235000 27595000 26311000 23105000 24947000 28861000 20736000 35423000 2439900 31967000 23958000 46623000 27710000 27766000 23907000 24420000 27663000 4 4 4 4 4 4 4 4 4 4 4 12880000 22563000 35815 19100000 17252000 15253000 13059000 12581000 10146000 12934000 15658000 11992000 21041000 1100200 19672000 16434000 15716000 13375000 12937000 10645000 12617000 14934000 3 3 2 3 3 3 3 3 3 3 3 7097200000 3055300000 4041900000 6164 1151 5746 32991;32992;32993;32994;32995;32996 39467;39468;39469;39470;39471;39472;39473 39472 7 GADFLVTEVENGGSLGSK Unmodified 1778.8687 0.86865806 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 By MS/MS By MS/MS 3.38 1.35 4 4 10 9 5 2 23 11 74.879 74.804 2;3;4 9.2005E-151 25571 20211116_3430_TMUAki_TMT10x_P_F3 395.43 321.55 431660000 716590000 3703800 680020000 429900000 600400000 455690000 332040000 315920000 353200000 479110000 401940000 668520000 37116000 695120000 413010000 610530000 456550000 351770000 333300000 344080000 457130000 46 46 28 46 46 46 46 46 46 46 46 302640000 495910000 2009900 461230000 298310000 479570000 316710000 221730000 208770000 235360000 324990000 281800000 462610000 25245000 473250000 286580000 481630000 316950000 238860000 221240000 229310000 309910000 27 27 15 27 27 27 27 27 27 27 27 129020000 220670000 1693900 218790000 131590000 120830000 138980000 110310000 107150000 117840000 154120000 120140000 205900000 11871000 221870000 126430000 128900000 139600000 112910000 112060000 114780000 147220000 19 19 13 19 19 19 19 19 19 19 19 71530000000 39195000000 32334000000 6165 670;671 5747 32997;32998;32999;33000;33001;33002;33003;33004;33005;33006;33007;33008;33009;33010;33011;33012;33013;33014;33015;33016;33017;33018;33019;33020;33021;33022;33023;33024;33025;33026;33027;33028;33029;33030 39474;39475;39476;39477;39478;39479;39480;39481;39482;39483;39484;39485;39486;39487;39488;39489;39490;39491;39492;39493;39494;39495;39496;39497;39498;39499;39500;39501;39502;39503;39504;39505;39506;39507;39508;39509;39510;39511;39512;39513;39514;39515;39516;39517;39518;39519;39520;39521;39522;39523;39524;39525;39526;39527 39485 54 GADFLVTEVENGGSLGSKK Unmodified 1906.9636 0.96362108 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 1 By MS/MS By MS/MS 5.47 1.09 4 5 4 4 9 8 65.115 65.257 3;4 5.9545E-41 20861 20211116_3433_TMUAki_TMT10x_P_F5 209.45 177.64 285040000 465870000 1642700 499870000 316020000 334540000 278920000 241530000 279570000 264650000 325700000 265390000 434830000 22998000 505080000 302020000 348920000 284880000 250960000 286030000 257520000 312760000 26 26 12 26 26 26 26 26 26 26 26 119910000 186350000 799760 200140000 147710000 211590000 139030000 100910000 117840000 109080000 132130000 111640000 173940000 9954600 203380000 141390000 212360000 140820000 108430000 121310000 106200000 127020000 12 12 7 12 12 12 12 12 12 12 12 165130000 279520000 842980 299730000 168310000 122950000 139890000 140620000 161740000 155560000 193570000 153750000 260890000 13043000 301700000 160630000 136550000 144060000 142530000 164720000 151320000 185740000 14 14 5 14 14 14 14 14 14 14 14 31517000000 15784000000 15734000000 6166 670;671 5748 33031;33032;33033;33034;33035;33036;33037;33038;33039;33040;33041;33042;33043;33044;33045;33046;33047 39528;39529;39530;39531;39532;39533;39534;39535;39536;39537;39538;39539;39540;39541;39542;39543;39544;39545;39546;39547;39548;39549;39550;39551;39552;39553;39554 39533 27 GADIMYTGTVDCWR Oxidation (M) 1659.7021 0.70212678 639;638 P12235;P12236 SLC25A4;SLC25A6 ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 0 0 1 0 By MS/MS By MS/MS 3.83 0.373 1 5 4 2 53.026 53.083 2;3 8.6902E-09 15626 20211116_3431_TMUAki_TMT10x_P_F4 127.93 113.24 6969400 11095000 39868 12472000 11175000 12463000 9026000 6289600 6457900 6140800 8257900 6489300 10358000 644470 12626000 10662000 12558000 9188300 6701900 6746000 6003500 7910300 4 4 2 4 4 4 4 4 4 4 4 5997300 9378700 39868 10656000 10362000 11790000 8194800 5303100 5433100 5124800 6981700 5584300 8756100 581330 10798000 9882500 11795000 8340200 5713900 5703000 5012500 6687000 3 3 2 3 3 3 3 3 3 3 3 972110 1716500 0 1815200 813050 672500 831140 986490 1024800 1015900 1276200 905010 1602100 63144 1827700 779050 762640 848110 988030 1043000 990990 1223300 1 1 0 1 1 1 1 1 1 1 1 1016000000 779610000 236410000 6167 638;639 5749 33048;33049;33050;33051;33052;33053 39555;39556;39557;39558;39559;39560 39555 671 6 GADKIEGAIDIR Unmodified 1256.6725 0.67246486 728 P19174-2;P19174 PLCG1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 yes no 0 0 0 1 By MS/MS By MS/MS 4.4 1.02 1 2 1 1 1 4 46.415 46.575 3 0.00018237 12162 20211116_3444_TMUAki_TMT10x_S_F5 90.707 48.497 24063000 36190000 199480 38820000 28749000 28019000 23039000 20581000 20358000 19075000 27790000 22406000 33779000 2215400 39255000 27432000 29043000 23585000 21256000 21092000 18692000 26578000 6 6 5 6 6 6 6 6 6 6 6 11048000 15372000 83951 17579000 15558000 16732000 10607000 8754200 8866800 8121700 12114000 10288000 14352000 1057400 17764000 14798000 16918000 10964000 9284300 9211800 7958100 11586000 2 2 2 2 2 2 2 2 2 2 2 13014000 20818000 115530 21241000 13190000 11288000 12431000 11827000 11491000 10954000 15676000 12118000 19427000 1158000 21491000 12633000 12125000 12620000 11971000 11880000 10734000 14993000 4 4 3 4 4 4 4 4 4 4 4 1234800000 403730000 831020000 6168 728 5750 33054;33055;33056;33057;33058 39561;39562;39563;39564;39565;39566;39567 39566 7 GADPGMPEPTVLSLLWG Oxidation (M) 1754.8549 0.85492225 3053 Q9P0U1 TOMM7 Mitochondrial import receptor subunit TOM7 homolog yes yes 0 0 1 0 By MS/MS By MS/MS 4.08 1.69 3 2 4 1 1 2 5 8 83.823 83.821 2;3 1.6818E-10 29290 20211116_3429_TMUAki_TMT10x_P_F2 130.41 111.97 3886200 6238900 41530 6165100 4366400 5789000 4929700 3611600 3531300 4273500 5243800 3618600 5821300 312150 6289000 4202100 5871700 4927700 3801700 3714400 4146400 5005500 11 11 7 11 11 11 11 11 11 11 11 1964700 3030000 27564 3071300 1992200 3561000 2400600 1672500 1642300 2111500 2548400 1829400 2827400 145840 3137700 1921700 3555100 2390200 1809000 1736100 2044100 2430300 5 5 2 5 5 5 5 5 5 5 5 1921500 3209000 13966 3093800 2374200 2227900 2529100 1939000 1889000 2162000 2695400 1789100 2993900 166310 3151400 2280400 2316600 2537500 1992700 1978300 2102300 2575200 6 6 5 6 6 6 6 6 6 6 6 888700000 428270000 460430000 6169 3053 5751 33059;33060;33061;33062;33063;33064;33065;33066;33067;33068;33069;33070;33071 39568;39569;39570;39571;39572;39573;39574;39575;39576;39577;39578;39579 39568 3097 12 GADPGMPEPTVLSLLWG Unmodified 1738.86 0.86000763 3053 Q9P0U1 TOMM7 Mitochondrial import receptor subunit TOM7 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 4.64 1.55 1 2 3 4 1 5 6 84.759 84.757 2;3 5.8191E-15 28016 20211116_3445_TMUAki_TMT10x_S_F6 143.61 126.39 2481500 4424300 28340 4075800 2714600 3102000 3103500 1975100 1924100 2154400 2908200 2310700 4127000 216990 4168100 2614300 3194800 3091100 2070400 2043900 2096700 2775000 12 12 8 12 12 12 12 12 12 12 12 1153700 1872400 12087 1874100 1165300 1807000 1328900 843190 815860 911650 1259400 1074300 1747200 106810 1910800 1122200 1823300 1323500 907990 868180 887540 1201200 4 4 3 4 4 4 4 4 4 4 4 1327700 2551900 16253 2201700 1549300 1295000 1774600 1131900 1108200 1242700 1648800 1236300 2379900 110180 2257300 1492200 1371500 1767600 1162400 1175800 1209100 1573800 8 8 5 8 8 8 8 8 8 8 8 147120000 94223000 52900000 6170 3053 5751 33072;33073;33074;33075;33076;33077;33078;33079;33080;33081;33082 39580;39581;39582;39583;39584;39585;39586;39587;39588;39589;39590;39591;39592;39593 39589 14 GAEAANVTGPDGVPVEGSR Unmodified 1781.8544 0.85440498 699 P16989;P16989-3;P16989-2 YBX3 Y-box-binding protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 39.222 39.068 3 2.005E-08 11215 20211116_3429_TMUAki_TMT10x_P_F2 106.31 88.677 580770 884090 6039.3 1002300 1242900 1153400 682070 673510 726620 582900 838190 540780 825390 59729 1016400 1177800 1154900 722560 706290 741220 573020 805110 2 2 1 2 2 2 2 2 2 2 2 441230 688830 6039.3 778550 1141900 1050800 568240 517820 592990 452850 661110 410870 643090 52022 791980 1080800 1041700 607150 551440 604600 444950 635640 1 1 1 1 1 1 1 1 1 1 1 139550 195260 0 223720 101040 102650 113830 155690 133640 130050 177080 129900 182300 7707.1 224410 96990 113230 115410 154850 136630 128070 169470 1 1 0 1 1 1 1 1 1 1 1 101930000 51865000 50062000 6171 699 5752 33083;33084;33085 39594;39595 39594 2 GAEAANVTGPGGVPVQGSK Unmodified 1694.8588 0.85876208 1410 P67809 YBX1 Nuclease-sensitive element-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 1 3 40.472 40.586 3 0.00014679 9892 20211116_3444_TMUAki_TMT10x_S_F5 66.777 47.172 42038000 69869000 4509800 87689000 66717000 60109000 50815000 63687000 62250000 56537000 70244000 39175000 65262000 8033900 87786000 63844000 63017000 52729000 64358000 63112000 55512000 67515000 4 4 4 4 4 4 4 4 4 4 4 11717000 17205000 1366500 21689000 23789000 27190000 14180000 16776000 15865000 16164000 16924000 10920000 16071000 2414000 21891000 22651000 27126000 14938000 17564000 16103000 15812000 16294000 1 1 1 1 1 1 1 1 1 1 1 30321000 52663000 3143300 66000000 42928000 32919000 36635000 46911000 46385000 40373000 53320000 28256000 49190000 5619900 65895000 41193000 35891000 37791000 46794000 47008000 39700000 51221000 3 3 3 3 3 3 3 3 3 3 3 1970900000 843130000 1127800000 6172 1410 5753 33086;33087;33088;33089 39596;39597;39598;39599;39600 39599 5 GAEADQIIEYLK Unmodified 1348.6874 0.68744622 1574 Q12904;Q12904-2 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 73.724 73.746 2;3 1.5159E-07 23247 20211116_3444_TMUAki_TMT10x_S_F5 113.22 86.782 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6173 1574 5754 33090;33091;33092 39601;39602;39603 39603 3 GAEASAASEEEAGPQATEPSTPSGPESGPTPASAEQNE Unmodified 3624.5459 0.54594612 1087 P49006 MARCKSL1 MARCKS-related protein yes yes 0 0 0 0 By MS/MS By MS/MS 1.64 0.643 5 5 1 6 5 47.139 46.976 3;4;5 9.0257E-33 12795 20211116_3428_TMUAki_TMT10x_P_F1 156.9 154.81 6920400 12096000 52133 16991000 10059000 12650000 7505200 18287000 11683000 12149000 10467000 6443700 11305000 298330 16923000 9581900 13281000 7875700 18125000 11660000 12118000 10135000 16 16 6 16 16 16 16 16 16 16 16 3771000 6686200 35702 8244300 9048900 11541000 6478300 10534000 6683700 6761300 5467500 3511200 6244800 221830 8349800 8612100 11532000 6712000 10649000 6747300 6758900 5311900 9 9 3 9 9 9 9 9 9 9 9 3149500 5409400 16431 8746300 1009900 1108200 1026900 7752400 4999400 5387200 4999800 2932600 5060000 76497 8572800 969760 1749400 1163800 7476000 4912300 5358900 4823100 7 7 3 7 7 7 7 7 7 7 7 14639000000 11131000000 3508400000 6174 1087 5755 33093;33094;33095;33096;33097;33098;33099;33100;33101;33102;33103 39604;39605;39606;39607;39608;39609;39610;39611;39612;39613;39614;39615;39616;39617;39618;39619 39606 16 GAEEEPPPPLQAVLVADSFDRR Unmodified 2392.2023 0.20228822 1599 Q13144 EIF2B5 Translation initiation factor eIF-2B subunit epsilon yes yes 0 0 0 1 By MS/MS By MS/MS 2.17 1.07 2 2 1 1 2 4 71.933 71.75 3 1.2929E-55 24485 20211116_3429_TMUAki_TMT10x_P_F2 228.3 210.14 20728000 34443000 215520 33358000 23015000 31159000 25770000 19972000 19698000 20296000 26543000 19300000 32135000 1766700 34074000 22138000 31627000 25807000 20881000 20548000 19809000 25393000 9 9 5 9 9 9 9 9 9 9 9 11516000 19257000 74501 18342000 11813000 21704000 14712000 11276000 11365000 11628000 15205000 10722000 17965000 846020 18827000 11393000 21669000 14668000 12002000 11845000 11342000 14549000 5 5 2 5 5 5 5 5 5 5 5 9211600 15186000 141020 15016000 11202000 9454400 11058000 8696100 8333500 8667800 11338000 8577900 14170000 920640 15248000 10746000 9957500 11139000 8879000 8703700 8466600 10844000 4 4 3 4 4 4 4 4 4 4 4 2963500000 1952900000 1010700000 6175 1599 5756 33104;33105;33106;33107;33108;33109 39620;39621;39622;39623;39624;39625;39626;39627;39628;39629;39630 39624 11 GAEEMETVIPVDVMR 2 Oxidation (M) 1706.7855 0.78552206 2578 Q99497 PARK7 Protein deglycase DJ-1 yes yes 0 0 2 0 By MS/MS By MS/MS 2.1 0.831 3 3 4 6 4 48.362 48.191 2;3 0.00028639 16362 20211116_3441_TMUAki_TMT10x_S_F3 80.24 66.886 15649000 27613000 284410 27512000 26009000 35031000 20346000 31758000 35129000 26878000 26535000 14572000 25766000 1501600 28186000 24806000 35150000 21392000 32308000 34786000 26452000 25864000 12 12 7 12 12 12 12 12 12 12 12 10522000 17389000 169040 18013000 20620000 29427000 15479000 20003000 21642000 16769000 16706000 9797300 16228000 1056500 18503000 19645000 29063000 16160000 20717000 21572000 16511000 16268000 7 7 4 7 7 7 7 7 7 7 7 5126700 10224000 115370 9498600 5389500 5603800 4867600 11754000 13487000 10109000 9829500 4774300 9537500 445050 9683100 5161400 6087200 5231500 11591000 13213000 9940800 9595400 5 5 3 5 5 5 5 5 5 5 5 6540200000 4999600000 1540600000 6176 2578 5757 33110;33111;33112;33113;33114;33115;33116;33117;33118;33119 39631;39632;39633;39634;39635;39636;39637;39638;39639;39640;39641;39642 39642 2814;2815 12 GAEEMETVIPVDVMR Oxidation (M) 1690.7906 0.79060744 2578 Q99497 PARK7 Protein deglycase DJ-1 yes yes 0 0 1 0 By MS/MS By MS/MS 2.07 0.772 4 6 5 9 6 59.168 58.944 2;3 5.6599E-19 18825 20211116_3429_TMUAki_TMT10x_P_F2 169.21 149.96 43705000 72869000 119580 77462000 58144000 69996000 53153000 43421000 39578000 43698000 56021000 40692000 68012000 3498500 78588000 55605000 71171000 53756000 45496000 41441000 42666000 53532000 18 18 6 18 18 18 18 18 18 18 18 28130000 44953000 77183 49492000 40974000 55939000 38287000 27018000 23851000 26937000 34786000 26190000 41963000 2320600 50266000 39208000 55940000 38530000 28927000 25284000 26311000 33218000 11 11 4 11 11 11 11 11 11 11 11 15575000 27916000 42399 27970000 17171000 14057000 14866000 16403000 15727000 16761000 21235000 14501000 26049000 1177900 28322000 16397000 15231000 15227000 16570000 16157000 16354000 20314000 7 7 2 7 7 7 7 7 7 7 7 8765500000 6038900000 2726600000 6177 2578 5757 33120;33121;33122;33123;33124;33125;33126;33127;33128;33129;33130;33131;33132;33133;33134 39643;39644;39645;39646;39647;39648;39649;39650;39651;39652;39653;39654;39655;39656;39657;39658;39659;39660 39646 2814;2815 18 GAEEMETVIPVDVMR Unmodified 1674.7957 0.79569281 2578 Q99497 PARK7 Protein deglycase DJ-1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.75 0.968 1 2 3 2 4 4 60.536 60.296 2;3 2.6444E-43 23325 20211116_3429_TMUAki_TMT10x_P_F2 259.47 228.6 21860000 33622000 1931.7 38520000 22718000 17188000 25189000 8619600 6659600 9375400 22239000 20351000 31391000 1536200 38632000 21827000 18634000 24848000 9218900 8138600 9125400 20971000 7 7 1 7 7 7 7 7 7 7 7 11034000 15862000 1931.7 18457000 11149000 11061000 13855000 4529400 3476500 4594700 10885000 10273000 14811000 780580 18535000 10749000 11578000 13591000 4936800 4253700 4484800 10271000 4 4 1 4 4 4 4 4 4 4 4 10826000 17760000 0 20063000 11570000 6126800 11334000 4090200 3183100 4780700 11354000 10079000 16580000 755610 20096000 11078000 7055500 11257000 4282100 3884900 4640600 10700000 3 3 0 3 3 3 3 3 3 3 3 1998100000 1113000000 885100000 6178 2578 5757 33135;33136;33137;33138;33139;33140;33141;33142 39661;39662;39663;39664;39665;39666;39667;39668;39669;39670 39662 10 GAEEMETVIPVDVMRR 2 Oxidation (M) 1862.8866 0.88663309 2578 Q99497 PARK7 Protein deglycase DJ-1 yes yes 0 0 2 1 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 40.102 39.984 3 7.0751E-05 13036 20211116_3441_TMUAki_TMT10x_S_F3 81.632 66.244 619200 1046000 19417 1267200 661530 513130 455710 1264500 1438600 934270 1108400 576680 976890 70025 1265800 630310 586140 503440 1237900 1408800 926070 1079400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 619200 1046000 19417 1267200 661530 513130 455710 1264500 1438600 934270 1108400 576680 976890 70025 1265800 630310 586140 503440 1237900 1408800 926070 1079400 2 2 2 2 2 2 2 2 2 2 2 175630000 0 175630000 6179 2578 5758 33143;33144;33145;33146 39671;39672;39673 39673 2814;2815 3 GAEIEYAMAYSK Oxidation (M) 1347.6017 0.60166768 2394 Q969H8 MYDGF Myeloid-derived growth factor yes yes 0 0 1 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 48.221 48.395 3 0.0031507 14152 20211116_3442_TMUAki_TMT10x_S_F4 62.924 46.67 2323700 3802600 46962 4109600 2517500 2410500 2154100 3263900 3108200 3218800 3554100 2164000 3549400 239130 4145400 2407600 2579600 2233600 3274100 3136200 3145500 3414700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2323700 3802600 46962 4109600 2517500 2410500 2154100 3263900 3108200 3218800 3554100 2164000 3549400 239130 4145400 2407600 2579600 2233600 3274100 3136200 3145500 3414700 1 1 1 1 1 1 1 1 1 1 1 163850000 0 163850000 6180 2394 5759 33147;33148 39674;39675 39675 2724 2 GAEIIVCTPGR Unmodified 1171.6019 0.60194245 2049 Q7L014 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.957 1 2 2 1 3 3 41.841 41.96 2 1.0469E-08 11461 20211116_3442_TMUAki_TMT10x_S_F4 157.66 95.326 11288000 17143000 47288 18428000 18243000 17993000 11566000 13699000 12636000 12785000 14362000 10511000 16001000 1057000 18702000 17326000 18260000 12114000 14117000 12869000 12524000 13801000 8 8 5 8 8 8 8 8 8 8 8 6553100 9377900 11590 10109000 13077000 13497000 6952500 7678400 7099800 7055500 7771000 6101500 8753300 625300 10312000 12384000 13410000 7377000 8081900 7240200 6916500 7475600 4 4 2 4 4 4 4 4 4 4 4 4735100 7764800 35699 8318900 5166300 4496400 4613500 6020400 5536200 5729300 6591400 4409100 7247400 431660 8390400 4941900 4850600 4737100 6035500 5629200 5607600 6325800 4 4 3 4 4 4 4 4 4 4 4 1298100000 697020000 601040000 6181 2049 5760 33149;33150;33151;33152;33153;33154 39676;39677;39678;39679;39680;39681;39682;39683 39680 8 GAEILADTFKDYAVSTVPVADGLHLK Unmodified 2729.4276 0.42759671 382 O94760;O94760-2 DDAH1 N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 yes no 0 0 0 1 By MS/MS 7 0 1 1 78.449 78.498 4 0.072331 27205 20211116_3435_TMUAki_TMT10x_P_F7 36.231 23.302 6006600 9826600 0 6713700 6164300 13307000 7577100 7781300 6752300 8026000 6789800 5591800 9157600 384990 7167500 5938700 13026000 7586400 8197700 6906700 7828600 6548700 1 1 0 1 1 1 1 1 1 1 1 6006600 9826600 0 6713700 6164300 13307000 7577100 7781300 6752300 8026000 6789800 5591800 9157600 384990 7167500 5938700 13026000 7586400 8197700 6906700 7828600 6548700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1977400000 1977400000 0 6182 382 5761 33155 39684 39684 1 GAEILEVLHSLPAVR Unmodified 1602.9093 0.90934108 1750 Q15008;Q15008-4;Q15008-3;Q15008-2 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 0 0 0 0 By MS/MS By MS/MS 7.4 0.49 3 2 2 3 76.937 76.968 3 3.0183E-14 26544 20211116_3435_TMUAki_TMT10x_P_F7 143.93 121.73 4653300 7330800 45038 6880700 4638700 7735900 5439100 5300000 4664200 5192700 5236300 4333000 6838800 417220 7064000 4469900 7773300 5451300 5508400 4799200 5075900 5033600 3 3 2 3 3 3 3 3 3 3 3 3412200 5068400 24423 4779200 3078200 6155300 3772400 3786900 3348800 3705300 3688200 3177200 4728200 290640 4916600 2969800 6132500 3777100 3967300 3437400 3622100 3547400 2 2 1 2 2 2 2 2 2 2 2 1241100 2262500 20615 2101500 1560500 1580600 1666700 1513100 1315400 1487500 1548100 1155800 2110500 126580 2147400 1500200 1640800 1674100 1541100 1361800 1453800 1486200 1 1 1 1 1 1 1 1 1 1 1 2681400000 1659600000 1021800000 6183 1750 5762 33156;33157;33158;33159;33160 39685;39686;39687;39688 39685 4 GAEPETGSAVSAAQCQGPTR Unmodified 1972.8909 0.89086684 3128 Q9UI10-2;Q9UI10-3 EIF2B4 Translation initiation factor eIF-2B subunit delta yes no 0 0 0 0 By matching By MS/MS 2.5 0.5 1 1 1 1 32.872 32.641 3 2.9706E-18 10076 20211116_3441_TMUAki_TMT10x_S_F3 147.06 137.4 77109 148720 0 186720 81066 75677 85770 120390 154190 100360 144140 71792 138910 5908.5 186140 77813 84949 88872 119550 153510 98841 139360 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 77109 148720 0 186720 81066 75677 85770 120390 154190 100360 144140 71792 138910 5908.5 186140 77813 84949 88872 119550 153510 98841 139360 1 1 0 1 1 1 1 1 1 1 1 58139000 39185000 18954000 6184 3128 5763 33161;33162 39689 39689 1 GAEPETGSAVSAAQCQVGPTR Unmodified 2071.9593 0.95928076 3127 Q9UI10 EIF2B4 Translation initiation factor eIF-2B subunit delta yes yes 0 0 0 0 By MS/MS By MS/MS 3.25 0.829 1 1 2 3 1 36.714 36.564 3 6.0897E-76 9052 20211116_3431_TMUAki_TMT10x_P_F4 261.66 251.49 649160 1048100 5103 1296700 1159800 924350 745780 896860 1144600 782970 1019200 604440 978940 62150 1299700 1101700 964010 790470 909850 1142500 769380 987090 4 4 1 4 4 4 4 4 4 4 4 171870 236530 0 345130 653330 467580 277520 248250 329200 185920 285670 160020 221110 20926 346250 616990 463860 302750 261610 331100 184150 276920 1 1 0 1 1 1 1 1 1 1 1 477290 811600 5103 951550 506470 456770 468260 648610 815390 597050 733560 444420 757830 41225 953460 484750 500160 487720 648240 811420 585240 710170 3 3 1 3 3 3 3 3 3 3 3 199480000 142750000 56737000 6185 3127 5764 33163;33164;33165;33166 39690;39691;39692;39693;39694 39690 5 GAESPFEEK Unmodified 992.44509 0.44509068 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 38.782 38.824 2 0.00095269 11320 20211116_3430_TMUAki_TMT10x_P_F3 107.15 52.605 143630 194190 1013.8 212090 467670 291090 161460 135630 176280 113940 199250 133740 181270 17391 216280 440790 288180 180240 145100 179500 112170 191500 1 1 1 1 1 1 1 1 1 1 1 143630 194190 1013.8 212090 467670 291090 161460 135630 176280 113940 199250 133740 181270 17391 216280 440790 288180 180240 145100 179500 112170 191500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6740800 6740800 0 6186 1057 5765 33167 39695 39695 1 GAETELVR Unmodified 873.4556 0.45559579 1042 P46087;P46087-2;P46087-4;P46087-3 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 0 0 0 0 By MS/MS 1 0 1 1 32.064 32.095 2 0.0015086 8768 20211116_3439_TMUAki_TMT10x_S_F1 120.92 60.563 213130 379130 5984.1 374070 237870 183810 253640 230690 270890 217780 323130 198490 353750 23594 379130 228840 200040 256990 231800 276690 213230 310100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 213130 379130 5984.1 374070 237870 183810 253640 230690 270890 217780 323130 198490 353750 23594 379130 228840 200040 256990 231800 276690 213230 310100 1 1 1 1 1 1 1 1 1 1 1 8781900 0 8781900 6187 1042 5766 33168 39696 39696 1 GAFASLSELHCDK Unmodified 1433.6609 0.66091389 53 CON__Q3SX09 yes yes 0 0 0 0 By MS/MS By MS/MS 7 1 1 1 1 1 50.129 50.129 3 7.9439E-13 13489 20211116_3434_TMUAki_TMT10x_P_F6 135.58 102.39 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6188 53 5767 33169;33170 39697;39698 39697 2 GAFFMDEDEEVYKR Oxidation (M) 1750.7509 0.75085111 1236 P55081 MFAP1 Microfibrillar-associated protein 1 yes yes 0 0 1 1 By MS/MS By MS/MS 3 0.894 2 1 2 3 2 50.723 50.675 3 0.00023982 14624 20211116_3431_TMUAki_TMT10x_P_F4 81.377 69.937 26190000 40978000 51499 55555000 71375000 66266000 33942000 46719000 55287000 35549000 44599000 24384000 38291000 2592000 55806000 67483000 66408000 37047000 48153000 54932000 35179000 43354000 7 7 2 7 7 7 7 7 7 7 7 19414000 29737000 51499 39188000 66034000 61188000 28973000 33598000 39310000 25840000 31828000 18075000 27783000 2111800 39640000 62375000 60357000 31646000 35321000 39273000 25556000 30935000 5 5 2 5 5 5 5 5 5 5 5 6776000 11241000 0 16367000 5341000 5078700 4969100 13120000 15978000 9708500 12771000 6308700 10508000 480200 16166000 5107800 6050800 5400600 12832000 15659000 9622400 12419000 2 2 0 2 2 2 2 2 2 2 2 1769600000 1170000000 599630000 6189 1236 5768 33171;33172;33173;33174;33175 39699;39700;39701;39702;39703;39704 39701 1675 6 GAFFMDEDEEVYKR Unmodified 1734.7559 0.75593649 1236 P55081 MFAP1 Microfibrillar-associated protein 1 yes yes 0 0 0 1 By MS/MS 3 0 1 1 56.928 56.712 3 0.083905 18841 20211116_3430_TMUAki_TMT10x_P_F3 36.519 18.423 5036900 8218200 0 8861800 7785700 11889000 6992900 7843500 7426500 6890300 6684900 4689800 7670900 447000 9040300 7444800 11834000 7148100 8150400 7509900 6768700 6471600 1 1 0 1 1 1 1 1 1 1 1 5036900 8218200 0 8861800 7785700 11889000 6992900 7843500 7426500 6890300 6684900 4689800 7670900 447000 9040300 7444800 11834000 7148100 8150400 7509900 6768700 6471600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 224000000 224000000 0 6190 1236 5768 33176 39705 39705 1 GAFGKPQGTVAR Unmodified 1187.6411 0.64110515 827 P27635;Q96L21 RPL10;RPL10L 60S ribosomal protein L10;60S ribosomal protein L10-like yes no 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 32.694 32.586 3 1.913E-09 8949 20211116_3439_TMUAki_TMT10x_S_F1 155.86 127.65 8251700 14038000 33365 12799000 10436000 10525000 9726800 7452100 8124900 7152700 10429000 7683100 13095000 718490 13111000 9988800 10794000 9853800 7723000 8417600 6998000 9989600 4 4 2 4 4 4 4 4 4 4 4 3432400 5594900 0 5247400 6329700 6601400 3913300 3292100 3579200 2901900 4407800 3195700 5219300 297840 5398000 6006700 6567200 4085500 3502500 3685300 2850200 4226400 2 2 0 2 2 2 2 2 2 2 2 4819200 8443300 33365 7551800 4106100 3923800 5813500 4160000 4545700 4250800 6021700 4487400 7875200 420650 7712800 3982100 4226400 5768300 4220400 4732300 4147800 5763200 2 2 2 2 2 2 2 2 2 2 2 1423300000 1005000000 418240000 6191 827 5769 33177;33178;33179;33180 39706;39707;39708;39709 39708 4 GAFIDQSQSLNIHIAEPNYGK Unmodified 2301.139 0.13895968 791 P23921 RRM1 Ribonucleoside-diphosphate reductase large subunit yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 62.142 62.526 3;4 3.6935E-32 18600 20211116_3434_TMUAki_TMT10x_P_F6 169.43 150.61 23452000 40425000 404840 38188000 26302000 30248000 24621000 22452000 20661000 22800000 26961000 21839000 37712000 2361500 38997000 25202000 31129000 24939000 23232000 21415000 22254000 25813000 6 6 6 6 6 6 6 6 6 6 6 7651400 13082000 63495 12787000 6416700 13849000 7517100 6247800 5667600 6057100 7783600 7124700 12206000 676240 13081000 6184100 13872000 7510100 6730300 5921800 5923600 7443000 2 2 2 2 2 2 2 2 2 2 2 15801000 27343000 341340 25401000 19885000 16399000 17104000 16204000 14993000 16743000 19177000 14714000 25507000 1685300 25916000 19017000 17257000 17429000 16501000 15494000 16330000 18370000 4 4 4 4 4 4 4 4 4 4 4 2234400000 1067600000 1166900000 6192 791 5770 33181;33182;33183;33184 39710;39711;39712;39713;39714;39715;39716 39710 7 GAGAYICGEETALIESIEGK Unmodified 2066.983 0.98303589 1123 P49821;P49821-2 NDUFV1 NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 79.682 79.664 3 0.00076337 28090 20211116_3439_TMUAki_TMT10x_S_F1 61.87 45.377 5095000 8579900 56181 7905600 5121500 6920600 5839400 4143400 4269200 4728300 5741300 4744300 8003400 475080 8097900 4932200 7048600 5837000 4370400 4464100 4593800 5492900 2 2 1 2 2 2 2 2 2 2 2 2747200 4613900 56181 4458100 2311500 4361500 2901700 2318500 2522400 2653400 3261500 2558400 4304700 274020 4557600 2234600 4403300 2900700 2470400 2608900 2577700 3123400 1 1 1 1 1 1 1 1 1 1 1 2347700 3965900 0 3447500 2810000 2559100 2937700 1824900 1746800 2074900 2479800 2185900 3698700 201060 3540400 2697600 2645300 2936200 1900000 1855200 2016100 2369500 1 1 0 1 1 1 1 1 1 1 1 1573400000 1008600000 564790000 6193 1123 5771 33185;33186 39717;39718 39718 2 GAGHMVPTDKPLAAFTMFSR 2 Oxidation (M) 2165.0398 0.039779685 609 P10619;P10619-2 CTSA Lysosomal protective protein;Lysosomal protective protein 32 kDa chain;Lysosomal protective protein 20 kDa chain yes no 0 0 2 1 By MS/MS 3 0 1 1 52.156 52.03 4 0.014388 16853 20211116_3430_TMUAki_TMT10x_P_F3 42.711 24.347 1527100 2104100 28860 2499500 1761700 3081600 1963000 2222300 1890400 1816600 1675800 1422100 1964800 156790 2530600 1696000 3084100 1978400 2290700 1918800 1790900 1623200 1 1 1 1 1 1 1 1 1 1 1 1527100 2104100 28860 2499500 1761700 3081600 1963000 2222300 1890400 1816600 1675800 1422100 1964800 156790 2530600 1696000 3084100 1978400 2290700 1918800 1790900 1623200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 282970000 282970000 0 6194 609 5772 33187 39719 39719 591;592 1 GAGPGCYLAGSLTLSK Unmodified 1550.7763 0.776278 848 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 64.133 63.975 3 1.2456E-10 20007 20211116_3440_TMUAki_TMT10x_S_F2 123.38 93.577 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6195 848 5773 33188;33189;33190 39720;39721;39722 39721 3 GAGSGELKVTVK Unmodified 1144.6452 0.64518747 755;1703 P21333;P21333-2;Q14315;Q14315-2 FLNA;FLNC Filamin-A;Filamin-C no no 0 0 0 1 By MS/MS 6 0 1 1 36.994 36.982 3 0.04327 8260 20211116_3434_TMUAki_TMT10x_P_F6 50.102 18.259 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6196 755;1703 5774 33191 39723 39723 1 GAGSVFR Unmodified 692.36057 0.36057319 1384 P62917 RPL8 60S ribosomal protein L8 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 27.958 27.968 2 0.029422 7410 20211116_3433_TMUAki_TMT10x_P_F5 80.294 28.837 1535100 2474000 3010.8 2405100 2343300 2275000 1669000 1365300 1522200 1313800 1816600 1429400 2308200 140070 2456500 2230000 2305200 1723600 1432500 1565500 1285300 1743300 2 2 1 2 2 2 2 2 2 2 2 1127100 1782300 3010.8 1742700 1877900 1907400 1233400 993790 1146100 942410 1278500 1049500 1663000 106770 1783100 1784600 1912400 1282000 1055000 1174500 922530 1229200 1 1 1 1 1 1 1 1 1 1 1 407970 691640 0 662360 465350 367570 435650 371460 376100 371390 538120 379850 645260 33302 673380 445360 392730 441610 377480 390970 362720 514090 1 1 0 1 1 1 1 1 1 1 1 29539000 24557000 4981700 6197 1384 5775 33192;33193 39724;39725 39724 2 GAGTDDHTLIR Unmodified 1154.568 0.56799978 564 P08758 ANXA5 Annexin A5 yes yes 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 29.331 29.227 3 2.2197E-11 8804 20211116_3441_TMUAki_TMT10x_S_F3 166.69 145.3 1257200 1817400 32947 1604800 1376000 1584200 1229100 822600 804350 784250 1354000 1170700 1695000 118040 1651900 1316400 1598000 1241200 873650 856380 767520 1289200 4 4 3 4 4 4 4 4 4 4 4 568420 824480 27530 760490 708440 821310 549680 420170 405480 411760 637850 529460 769090 74744 781250 676960 823930 561400 447190 427060 402490 608110 2 2 2 2 2 2 2 2 2 2 2 688760 992890 5416.7 844360 667510 762870 679400 402440 398870 372490 716200 641200 925920 43298 870660 639460 774090 679840 426460 429310 365030 681070 2 2 1 2 2 2 2 2 2 2 2 44468000 28113000 16354000 6198 564 5776 33194;33195;33196;33197 39726;39727;39728;39729 39729 4 GAGTGGLGLAIEGPSEAK Unmodified 1583.8155 0.81550028 1703 Q14315;Q14315-2 FLNC Filamin-C yes no 0 0 0 0 By MS/MS 4 0 1 1 56.033 56.016 3 0.051323 17296 20211116_3442_TMUAki_TMT10x_S_F4 39.231 10.598 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6199 1703 5777 33198 39730 39730 1 GAGTGGLGLAVEGPSEAK Unmodified 1569.7999 0.79985021 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 3.88 1.05 1 2 2 3 5 3 51.483 51.469 2;3 4.7921E-40 15275 20211116_3433_TMUAki_TMT10x_P_F5 186.51 145.78 35460000 55422000 668870 69521000 64466000 64811000 41355000 53451000 57299000 45237000 54003000 33022000 51767000 3965800 69856000 61272000 66060000 43650000 54673000 57478000 44519000 52197000 11 11 10 11 11 11 11 11 11 11 11 20169000 30895000 420800 38308000 51771000 51939000 29352000 29206000 31735000 25044000 29372000 18783000 28856000 2507000 38760000 49102000 51560000 31019000 30718000 32097000 24631000 28407000 6 6 6 6 6 6 6 6 6 6 6 15291000 24527000 248070 31213000 12695000 12872000 12003000 24245000 25565000 20193000 24631000 14239000 22911000 1458800 31096000 12170000 14500000 12631000 23955000 25381000 19888000 23790000 5 5 4 5 5 5 5 5 5 5 5 4263500000 2185000000 2078500000 6200 755 5778 33199;33200;33201;33202;33203;33204;33205;33206 39731;39732;39733;39734;39735;39736;39737;39738;39739;39740;39741;39742 39737 12 GAGVAGPAAHPGVSDR Unmodified 1417.7062 0.7062246 1894 Q4G148;Q4G148-2 GXYLT1 Glucoside xylosyltransferase 1 yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 27.88 27.868 3 0.1078 5970 20211116_3433_TMUAki_TMT10x_P_F5 19.664 0.39252 110490 183540 2207.9 187610 181070 185610 112800 95721 111540 113510 142270 102890 171280 12206 191070 172040 187190 117940 102390 114620 110130 136290 1 1 1 1 1 1 1 1 1 1 1 110490 183540 2207.9 187610 181070 185610 112800 95721 111540 113510 142270 102890 171280 12206 191070 172040 187190 117940 102390 114620 110130 136290 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12205000 12205000 0 6201 1894 5779 33207;33208 39743 39743 1 GAGYTFGQDISETFNHANGLTLVSR Unmodified 2654.2725 0.27249305 1363 P67775;P62714 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform yes no 0 0 0 0 By MS/MS By MS/MS 7.57 0.495 3 4 3 4 73.099 73.152 3;4 5.933E-106 23576 20211116_3436_TMUAki_TMT10x_P_F8 309.99 295.47 30931000 52882000 502110 50772000 41498000 41179000 36773000 27385000 25636000 27658000 36558000 28803000 49337000 2285000 51801000 39695000 42232000 37202000 28548000 26955000 27001000 34928000 10 10 5 10 10 10 10 10 10 10 10 8514000 13672000 147580 13178000 7931600 14476000 9072700 6919800 7306200 7673900 9728500 7927700 12756000 735870 13498000 7636300 14497000 9088500 7439500 7596000 7463600 9309700 3 3 1 3 3 3 3 3 3 3 3 22417000 39210000 354530 37593000 33566000 26704000 27700000 20465000 18330000 19985000 26830000 20875000 36581000 1549200 38303000 32059000 27736000 28114000 21108000 19359000 19538000 25619000 7 7 4 7 7 7 7 7 7 7 7 10537000000 5276500000 5260600000 6202 1363 5780 33209;33210;33211;33212;33213;33214;33215 39744;39745;39746;39747;39748;39749;39750;39751;39752;39753 39745 10 GAHGIIVVYDVTDQESFNNVK Unmodified 2304.1386 0.13862533 1367 P62820 RAB1A Ras-related protein Rab-1A yes yes 0 0 0 0 By matching By MS/MS 5.67 0.471 1 2 1 2 62.494 62.519 3;4 3.4547E-08 18643 20211116_3444_TMUAki_TMT10x_S_F5 100.04 90.121 6902500 12170000 212340 10721000 9260200 7809100 8492100 7569000 7219300 8409700 9039500 6428000 11350000 742520 10996000 8868700 8129700 8614600 7732900 7464700 8178700 8663700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6902500 12170000 212340 10721000 9260200 7809100 8492100 7569000 7219300 8409700 9039500 6428000 11350000 742520 10996000 8868700 8129700 8614600 7732900 7464700 8178700 8663700 2 2 1 2 2 2 2 2 2 2 2 1282800000 342830000 939930000 6203 1367 5781 33216;33217;33218 39754;39755 39754 2 GAHGIIVVYDVTDQESYANVK Unmodified 2277.1277 0.12772629 2781 Q9H0U4 RAB1B Ras-related protein Rab-1B yes yes 0 0 0 0 By MS/MS By MS/MS 5.25 0.829 1 1 2 2 2 60.379 60.468 3 3.7531E-10 18697 20211116_3431_TMUAki_TMT10x_P_F4 104.76 89.994 18909000 31621000 88917 31849000 26411000 38509000 22127000 27503000 30190000 27233000 27465000 17605000 29507000 1575800 32575000 25210000 38572000 22918000 28511000 30264000 26608000 26579000 4 4 2 4 4 4 4 4 4 4 4 11653000 18547000 0 19076000 19185000 29766000 14231000 16742000 18676000 16564000 16512000 10849000 17308000 891830 19583000 18259000 29372000 14832000 17675000 18729000 16184000 15995000 2 2 0 2 2 2 2 2 2 2 2 7256000 13074000 88917 12774000 7225800 8742700 7895100 10761000 11514000 10669000 10953000 6756700 12199000 684020 12992000 6950600 9200500 8085300 10836000 11535000 10424000 10583000 2 2 2 2 2 2 2 2 2 2 2 2296800000 1679700000 617120000 6204 2781 5782 33219;33220;33221;33222 39756;39757;39758;39759;39760 39756 5 GAHVTINAR Unmodified 937.50936 0.50936269 3142 Q9UJU6;Q9UJU6-2;Q9UJU6-3;Q9UJU6-5 DBNL Drebrin-like protein yes no 0 0 0 0 By MS/MS 3 0 1 1 26.588 26.295 3 0.032209 7648 20211116_3441_TMUAki_TMT10x_S_F3 48.157 23.159 76531 140480 1165.2 120480 87572 78684 106360 67319 89880 79132 90087 71266 131000 7585.4 123690 84511 82481 106390 69372 92167 76798 86897 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 76531 140480 1165.2 120480 87572 78684 106360 67319 89880 79132 90087 71266 131000 7585.4 123690 84511 82481 106390 69372 92167 76798 86897 1 1 1 1 1 1 1 1 1 1 1 2252700 0 2252700 6205 3142 5783 33223 39761 39761 1 GAIDDLQQGELEAFIQNLNLAK Unmodified 2399.2333 0.233254 1508 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 0 0 0 0 By MS/MS By MS/MS 4.71 1.67 1 1 1 1 2 1 2 5 81.779 81.778 3 1.0386E-35 26454 20211116_3434_TMUAki_TMT10x_P_F6 194.27 176.55 6560400 11062000 90836 10454000 7940400 9519400 8272800 7534300 6401500 7363800 9133900 6108900 10320000 628180 10694000 7626200 9710800 8316100 7755500 6691300 7198900 8726500 8 8 4 8 8 8 8 8 8 8 8 2536100 3892000 49931 3971100 2581600 4713900 2943300 2730700 2555000 2872800 3570700 2361700 3631900 247590 4056700 2486900 4711800 2954600 2880700 2652300 2799900 3413100 3 3 2 3 3 3 3 3 3 3 3 4024300 7170400 40905 6483400 5358800 4805500 5329500 4803700 3846500 4491000 5563200 3747200 6688200 380600 6637600 5139400 4998900 5361600 4874800 4039000 4399000 5313500 5 5 2 5 5 5 5 5 5 5 5 1528600000 424250000 1104400000 6206 1508 5784 33224;33225;33226;33227;33228;33229;33230 39762;39763;39764;39765;39766;39767;39768;39769 39763 8 GAIENCCR Unmodified 978.40113 0.40113415 3032 Q9NZI8;Q9NZI8-2 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes no 0 0 0 0 By matching By MS/MS 2.5 0.5 1 1 1 1 26.911 26.646 2 0.10249 7909 20211116_3441_TMUAki_TMT10x_S_F3 47.749 36.108 186790 298080 0 196540 182970 238330 150930 117280 104070 94924 156910 173870 277770 8536.8 208300 174190 237490 153320 124690 109800 93629 149730 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 186790 298080 0 196540 182970 238330 150930 117280 104070 94924 156910 173870 277770 8536.8 208300 174190 237490 153320 124690 109800 93629 149730 1 1 0 1 1 1 1 1 1 1 1 2904800 1278800 1626100 6207 3032 5785 33231;33232 39770 39770 1 GAIEVLIR Unmodified 869.53345 0.53345218 1118 P49756;P49756-2;P49756-3 RBM25 RNA-binding protein 25 yes no 0 0 0 0 By MS/MS By MS/MS 5 1.1 1 2 2 3 2 53.458 53.539 2 0.0010787 16038 20211116_3433_TMUAki_TMT10x_P_F5 128.57 65.849 11844000 18232000 131900 19817000 13735000 13771000 11356000 16447000 14594000 14053000 15775000 11029000 17018000 1028000 20014000 13111000 14462000 11744000 16516000 14747000 13824000 15181000 4 4 2 4 4 4 4 4 4 4 4 2300200 3492700 26236 3828700 4030000 5298300 2945200 3275400 2865200 2934200 3093800 2141900 3260300 239380 3904100 3838500 5261400 3041700 3422100 2926500 2879700 2977400 1 1 1 1 1 1 1 1 1 1 1 9544200 14739000 105660 15988000 9704800 8473200 8411200 13172000 11729000 11119000 12681000 8886600 13758000 788590 16110000 9272500 9201000 8702200 13094000 11820000 10944000 12203000 3 3 1 3 3 3 3 3 3 3 3 540580000 200090000 340490000 6208 1118 5786 33233;33234;33235;33236;33237 39771;39772;39773;39774;39775 39771 5 GAIILAK Unmodified 684.45341 0.45341094 687 P15880 RPS2 40S ribosomal protein S2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.86 3.09 2 1 2 2 3 4 47.499 47.609 2 0.001158 12945 20211116_3428_TMUAki_TMT10x_P_F1 140.79 73.735 45356000 73132000 95585 75774000 54592000 53320000 46427000 40658000 34739000 38597000 52843000 42227000 68250000 3424800 76779000 52110000 55419000 47158000 41916000 36495000 37781000 50415000 7 7 1 7 7 7 7 7 7 7 7 20750000 32073000 0 32978000 29828000 35846000 22744000 17895000 15394000 17081000 23562000 19318000 29931000 1496200 33622000 28399000 35937000 23213000 19076000 16272000 16716000 22476000 3 3 0 3 3 3 3 3 3 3 3 24605000 41059000 95585 42796000 24765000 17474000 23684000 22763000 19346000 21516000 29281000 22909000 38319000 1928700 43157000 23711000 19482000 23946000 22839000 20223000 21065000 27939000 4 4 1 4 4 4 4 4 4 4 4 3229000000 2184900000 1044100000 6209 687 5787 33238;33239;33240;33241;33242;33243;33244 39776;39777;39778;39779;39780;39781;39782 39776 7 GAILSEEELAAMSPTAAAVAK Unmodified 2029.0402 0.04015684 641 P12270;P12270-2 TPR Nucleoprotein TPR yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 75.88 75.91 3 1.5705E-10 24907 20211116_3431_TMUAki_TMT10x_P_F4 114.55 43.173 6402400 9743300 116230 9826100 6250200 9611400 8029500 4525800 3754800 4570900 6889500 5962000 9091800 625820 10015000 6044000 9690400 7919300 4859500 4118100 4462400 6549000 2 2 1 2 2 2 2 2 2 2 2 6402400 9743300 116230 9826100 6250200 9611400 8029500 4525800 3754800 4570900 6889500 5962000 9091800 625820 10015000 6044000 9690400 7919300 4859500 4118100 4462400 6549000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1536200000 1536200000 0 6210 641 5788 33245;33246 39783;39784 39783 2 GAILSEEELAAMSPTAAAVAK Oxidation (M) 2045.0351 0.035071462 641 P12270;P12270-2 TPR Nucleoprotein TPR yes no 0 0 1 0 By MS/MS 4 0 1 1 64.878 64.977 3 0.0054546 20517 20211116_3431_TMUAki_TMT10x_P_F4 49.773 31.856 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6211 641 5788 33247 39785 39785 675 1 GAIREYQTQLIQR Unmodified 1574.8529 0.85288884 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 38.131 38.331 3 7.5071E-23 9085 20211116_3436_TMUAki_TMT10x_P_F8 208.68 162.85 1027800 1702500 6943.2 1995900 1649400 1478900 965010 1792900 1898100 1319000 1739900 957020 1589700 97474 2007700 1564600 1545500 1043500 1792900 1884500 1307800 1683300 4 4 2 4 4 4 4 4 4 4 4 370240 581630 1548 665020 939940 951960 502550 576500 539000 427460 630260 344730 543040 37951 676830 890210 943660 533750 600630 549990 423620 605160 2 2 1 2 2 2 2 2 2 2 2 657560 1120800 5395.2 1330900 709470 526890 462460 1216400 1359100 891590 1109700 612290 1046600 59522 1330900 674340 601850 509770 1192200 1334500 884150 1078200 2 2 1 2 2 2 2 2 2 2 2 131680000 46938000 84742000 6212 1695 5789 33248;33249;33250;33251 39786;39787;39788;39789;39790 39787 5 GAKAEEILEK Unmodified 1086.5921 0.59208927 1383 P62913;P62913-2 RPL11 60S ribosomal protein L11 yes no 0 0 0 1 By MS/MS By MS/MS 4 0.707 1 2 1 3 1 42.948 43.064 3 0.0012912 11652 20211116_3431_TMUAki_TMT10x_P_F4 81.709 22.731 5381400 9161200 120640 8340700 9987800 9597900 6715500 6969800 6374700 6070900 7830400 5011400 8545300 609340 8585600 9500900 9641100 6972400 7192100 6551700 5966200 7508600 3 3 2 3 3 3 3 3 3 3 3 3533600 6189000 120640 5579600 7663000 8008800 4707300 4694200 4256400 4229500 5251400 3291000 5772700 463230 5771400 7280700 7934500 4915400 4926100 4385200 4149900 5035000 2 2 2 2 2 2 2 2 2 2 2 1847800 2972200 0 2761100 2324700 1589100 2008200 2275600 2118300 1841400 2579000 1720400 2772500 146100 2814200 2220200 1706600 2056900 2266000 2166500 1816300 2473600 1 1 0 1 1 1 1 1 1 1 1 388940000 261160000 127770000 6213 1383 5790 33252;33253;33254;33255 39791;39792;39793 39791 3 GAKEEHGGLIR Unmodified 1165.6204 0.62036971 812 P26368;P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 0 0 0 1 By MS/MS 4.5 0.5 2 2 4 27.587 27.555 3;4 0.0002671 5805 20211116_3433_TMUAki_TMT10x_P_F5 89.301 65.211 371550 611750 6815.1 492230 580700 826480 513640 453660 539690 469060 481280 346000 570380 40085 515590 555530 812970 525320 480530 545830 457480 466080 3 3 3 3 3 3 3 3 3 3 3 371550 611750 6815.1 492230 580700 826480 513640 453660 539690 469060 481280 346000 570380 40085 515590 555530 812970 525320 480530 545830 457480 466080 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24874000 24874000 0 6214 812 5791 33256;33257;33258;33259 39794;39795;39796;39797 39796 4 GAKVNLVFDIK Unmodified 1202.7023 0.70230842 3379 yes yes 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 61.025 60.768 3 0.0067424 19969 20211116_3429_TMUAki_TMT10x_P_F2 66.289 37.546 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6215 3379 5792 33260;33261;33262 39798;39799;39800 39798 3 GALALAQAVQR Unmodified 1096.6353 0.63529149 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 2.57 2.26 2 4 1 4 3 48.765 48.64 2;3 1.2508E-15 13465 20211116_3428_TMUAki_TMT10x_P_F1 201.3 171.49 12581000 21718000 325300 23304000 23055000 26816000 15582000 18911000 19048000 16142000 18397000 11716000 20271000 1492900 23714000 21938000 26924000 16303000 19543000 19203000 15880000 17767000 3 3 3 3 3 3 3 3 3 3 3 10155000 17226000 279820 18822000 20627000 24600000 13714000 14195000 14636000 12461000 14284000 9457100 16079000 1249300 19175000 19621000 24471000 14301000 14906000 14836000 12242000 13790000 2 2 2 2 2 2 2 2 2 2 2 2426100 4492200 45478 4482100 2428600 2215600 1867900 4715700 4412400 3681400 4112700 2259300 4191700 243560 4539300 2317300 2453100 2002700 4637400 4366900 3638000 3976600 1 1 1 1 1 1 1 1 1 1 1 1463400000 1213700000 249740000 6216 629 5793 33263;33264;33265;33266;33267;33268;33269 39801;39802;39803;39804;39805;39806;39807 39801 7 GALALEEK Unmodified 829.45453 0.45453316 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 43.39 43.25 2 0.0027005 14384 20211116_3441_TMUAki_TMT10x_S_F3 106.36 19.403 2777300 4450200 15256 4934900 3514700 3575900 2979600 2738600 2946900 2513400 3448400 2585900 4154300 236850 4979800 3356300 3707900 3049300 2819900 3017200 2464000 3311000 2 2 1 2 2 2 2 2 2 2 2 1194500 1908300 0 2193900 1963300 2128700 1404200 1007900 1236900 1053200 1367300 1112100 1781700 91845 2217000 1867300 2147400 1448400 1082700 1270300 1026800 1315000 1 1 0 1 1 1 1 1 1 1 1 1582800 2541900 15256 2741000 1551400 1447200 1575400 1730700 1709900 1460200 2081100 1473800 2372600 145000 2762800 1489100 1560400 1600900 1737300 1746800 1437300 1996100 1 1 1 1 1 1 1 1 1 1 1 144880000 90970000 53906000 6217 934 5794 33270;33271 39808;39809 39809 2 GALINVPPPFLGLPR Unmodified 1559.9188 0.91878356 820 P26640 VARS Valine--tRNA ligase yes yes 0 0 0 0 By MS/MS By MS/MS 4.36 0.771 2 3 6 7 4 78.525 78.513 2;3 2.9376E-19 25188 20211116_3444_TMUAki_TMT10x_S_F5 171.85 141.6 35359000 58017000 391810 51627000 39177000 49964000 43762000 32476000 29911000 34372000 43523000 32923000 54112000 2991900 53094000 37680000 50610000 43721000 33959000 31518000 33491000 41563000 10 10 7 10 10 10 10 10 10 10 10 16461000 27034000 239250 22810000 15146000 29011000 20079000 15276000 13737000 16185000 19223000 15327000 25210000 1375400 23661000 14648000 28863000 19913000 16252000 14447000 15769000 18374000 4 4 3 4 4 4 4 4 4 4 4 18898000 30983000 152560 28817000 24031000 20953000 23683000 17200000 16174000 18187000 24299000 17596000 28902000 1616500 29434000 23032000 21746000 23809000 17707000 17071000 17722000 23189000 6 6 4 6 6 6 6 6 6 6 6 7516400000 3874900000 3641500000 6218 820 5795 33272;33273;33274;33275;33276;33277;33278;33279;33280;33281;33282 39810;39811;39812;39813;39814;39815;39816;39817;39818;39819;39820;39821 39818 12 GALIVLEGVDR Unmodified 1140.6503 0.65027285 790 P23919;P23919-2 DTYMK Thymidylate kinase yes no 0 0 0 0 By MS/MS By MS/MS 3.4 0.49 3 2 2 3 63.497 63.302 2 7.206E-11 19848 20211116_3431_TMUAki_TMT10x_P_F4 163.94 127.38 15464000 24285000 385520 24082000 16495000 25688000 17034000 19261000 17087000 19373000 19457000 14402000 22660000 1655800 24606000 15853000 25926000 17252000 19911000 17464000 18916000 18696000 3 3 3 3 3 3 3 3 3 3 3 9791400 14584000 171380 14998000 10950000 19737000 11350000 12471000 11010000 12416000 12550000 9118100 13610000 987720 15342000 10519000 19651000 11481000 13044000 11270000 12128000 12059000 2 2 2 2 2 2 2 2 2 2 2 5672900 9701300 214140 9083900 5545000 5950700 5684300 6789800 6076400 6957100 6906800 5283600 9050100 668100 9263800 5333300 6274300 5770700 6866100 6194000 6787700 6637000 1 1 1 1 1 1 1 1 1 1 1 1833800000 1072700000 761130000 6219 790 5796 33283;33284;33285;33286;33287 39822;39823;39824;39825 39823 4 GALNGQGALNSQEEEEVIVTEVGQR Unmodified 2626.2835 0.28345167 1501 Q02952 AKAP12 A-kinase anchor protein 12 yes yes 0 0 0 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 3 2 66.955 66.779 3 1.177E-49 20837 20211116_3428_TMUAki_TMT10x_P_F1 217.82 202.7 6666500 11941000 56282 10515000 7842600 11342000 8621200 8022200 7889300 7960700 8940100 6207400 11137000 509220 10840000 7541800 11429000 8681500 8322200 8095300 7777400 8591700 7 7 4 7 7 7 7 7 7 7 7 4105000 7218400 34682 6478000 4812900 8376800 5422600 5067400 4937300 4957200 5634200 3822400 6732700 281430 6689300 4631900 8342300 5453400 5315900 5068800 4846000 5413500 4 4 2 4 4 4 4 4 4 4 4 2561500 4722600 21600 4036600 3029700 2965400 3198600 2954800 2952000 3003500 3306000 2385100 4404200 227790 4150400 2909900 3086800 3228000 3006200 3026500 2931400 3178200 3 3 2 3 3 3 3 3 3 3 3 2019900000 1509800000 510070000 6220 1501 5797 33288;33289;33290;33291;33292 39826;39827;39828;39829;39830;39831;39832;39833;39834 39826 9 GALPLDTVTFYK Unmodified 1323.7075 0.70745338 858 P30040;P30040-2 ERP29 Endoplasmic reticulum resident protein 29 yes no 0 0 0 0 By MS/MS By MS/MS 7.18 0.716 2 5 4 5 6 71.776 71.855 2;3 1.54E-30 24790 20211116_3446_TMUAki_TMT10x_S_F7 267.63 220.57 139640000 229110000 941490 217340000 167570000 205190000 165120000 128840000 130980000 129180000 169650000 130020000 213740000 11668000 222380000 160590000 208060000 166560000 134860000 136120000 126150000 162460000 13 13 8 13 13 13 13 13 13 13 13 82736000 134950000 624300 126450000 94491000 145950000 99030000 76824000 78639000 78344000 99419000 77032000 125900000 6579900 129890000 90688000 145930000 99582000 81643000 81631000 76453000 95262000 7 7 4 7 7 7 7 7 7 7 7 56904000 94159000 317190 90891000 73080000 59235000 66090000 52014000 52343000 50832000 70230000 52985000 87848000 5088300 92482000 69906000 62135000 66978000 53214000 54487000 49694000 67195000 6 6 4 6 6 6 6 6 6 6 6 17648000000 9171600000 8476400000 6221 858 5798 33293;33294;33295;33296;33297;33298;33299;33300;33301;33302;33303 39835;39836;39837;39838;39839;39840;39841;39842;39843;39844;39845;39846;39847;39848 39843 14 GALQAVDQLSLFRPLCK Unmodified 1915.035 0.034952303 8 A1L0T0 ILVBL Acetolactate synthase-like protein yes yes 0 0 0 1 By MS/MS 4 0 1 1 76.396 76.418 3 1.8977E-37 25215 20211116_3431_TMUAki_TMT10x_P_F4 218.43 181.99 9339500 14569000 6063.5 13226000 7762100 13874000 10180000 6933700 5033100 7570500 10039000 8696000 13589000 757870 13598000 7503800 13938000 10040000 7419000 5523100 7367500 9529400 1 1 1 1 1 1 1 1 1 1 1 9339500 14569000 6063.5 13226000 7762100 13874000 10180000 6933700 5033100 7570500 10039000 8696000 13589000 757870 13598000 7503800 13938000 10040000 7419000 5523100 7367500 9529400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1164100000 1164100000 0 6222 8 5799 33304 39849 39849 1 GALQNIIPASTGAAK Unmodified 1410.7831 0.78307794 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS 4.27 2.89 6 5 3 4 4 12 10 57.066 57.108 2;3 3.3659E-44 16637 20211116_3436_TMUAki_TMT10x_P_F8 274.8 247.55 184220000 313030000 2493600 368690000 271200000 296790000 182050000 274620000 288760000 241560000 271810000 171530000 292300000 17702000 371120000 257870000 306290000 192630000 279350000 288490000 237280000 262730000 34 34 21 34 34 34 34 34 34 34 34 86366000 139830000 756080 166710000 199630000 225940000 122180000 126690000 132450000 111230000 123750000 80417000 130570000 8956400 169060000 189480000 224290000 128300000 133360000 133990000 109270000 119640000 16 16 9 16 16 16 16 16 16 16 16 97852000 173200000 1737600 201980000 71565000 70845000 59874000 147930000 156310000 130330000 148070000 91118000 161720000 8745100 202060000 68391000 81993000 64329000 145990000 154500000 128010000 143090000 18 18 12 18 18 18 18 18 18 18 18 165770000000 97028000000 68743000000 6223 489 5800 33305;33306;33307;33308;33309;33310;33311;33312;33313;33314;33315;33316;33317;33318;33319;33320;33321;33322;33323;33324;33325;33326 39850;39851;39852;39853;39854;39855;39856;39857;39858;39859;39860;39861;39862;39863;39864;39865;39866;39867;39868;39869;39870;39871;39872;39873;39874;39875;39876;39877;39878;39879;39880;39881;39882;39883;39884 39866 35 GALQYLVPILTQTLTK Unmodified 1758.0291 0.029121869 1739 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 0 By MS/MS By MS/MS 6.17 0.898 1 1 5 5 6 6 82.662 82.672 2;3 4.2126E-47 26599 20211116_3434_TMUAki_TMT10x_P_F6 253.79 221.85 21482000 32838000 308180 33702000 18239000 29875000 25320000 12627000 14242000 17881000 19105000 20003000 30645000 1913300 34263000 17678000 30283000 24970000 13866000 15146000 17247000 18280000 12 12 6 12 12 12 12 12 12 12 12 12911000 19323000 211280 19337000 10731000 19866000 12750000 7067100 8517500 10531000 10939000 12022000 18031000 1180200 19734000 10349000 19918000 12696000 7935000 8936200 10143000 10478000 5 5 3 5 5 5 5 5 5 5 5 8571100 13515000 96903 14364000 7508800 10008000 12570000 5560300 5724400 7349700 8166000 7980800 12614000 733080 14529000 7329500 10364000 12274000 5931400 6209800 7104400 7801900 7 7 3 7 7 7 7 7 7 7 7 7031900000 2686700000 4345200000 6224 1739 5801 33327;33328;33329;33330;33331;33332;33333;33334;33335;33336;33337;33338 39885;39886;39887;39888;39889;39890;39891;39892;39893;39894;39895;39896;39897 39887 13 GALSPGGFDDSTLPLVDK Unmodified 1787.8941 0.89414453 68 O00192;O00192-2 ARVCF Armadillo repeat protein deleted in velo-cardio-facial syndrome yes no 0 0 0 0 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 74.138 74.082 3 0.10247 24112 20211116_3431_TMUAki_TMT10x_P_F4 22.531 3.9351 39702000 74500000 482130 51943000 61017000 47494000 42143000 39252000 32849000 38190000 48115000 36970000 69432000 4002700 54517000 58058000 48473000 43446000 40293000 34367000 37342000 45943000 6 6 4 6 6 6 6 6 6 6 6 10899000 19458000 109110 14060000 9951400 19375000 11687000 11700000 9998800 10893000 13139000 10148000 18137000 960390 14804000 9590100 19238000 11712000 12259000 10357000 10672000 12577000 3 3 2 3 3 3 3 3 3 3 3 28803000 55042000 373030 37883000 51065000 28119000 30456000 27553000 22850000 27296000 34977000 26821000 51296000 3042300 39713000 48468000 29235000 31735000 28035000 24009000 26670000 33365000 3 3 2 3 3 3 3 3 3 3 3 3481300000 1867000000 1614300000 6225 68 5802 33339;33340;33341;33342 39898 39898 1 GALTGGYYDTR Unmodified 1172.5462 0.54620171 3219 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 38.342 38.441 2 2.7927E-05 9846 20211116_3442_TMUAki_TMT10x_S_F4 105.98 85.416 2774300 4603600 8725 6130900 6742600 6433400 3473300 4430400 5991600 3692900 4654100 2583100 4301300 278400 6151200 6382500 6490200 3772000 4583500 5937800 3637100 4531100 3 3 2 3 3 3 3 3 3 3 3 1641600 2693300 0 3658800 5896500 5647700 2607300 2791300 3750300 2328100 2753700 1528400 2516700 180380 3694200 5570200 5566600 2852100 2968200 3729900 2292800 2687300 1 1 0 1 1 1 1 1 1 1 1 1132600 1910300 8725 2472000 846080 785690 866000 1639100 2241300 1364800 1900400 1054700 1784600 98021 2457000 812290 923610 919960 1615200 2207900 1344200 1843800 2 2 2 2 2 2 2 2 2 2 2 148020000 71956000 76063000 6226 3219 5803 33343;33344;33345;33346;33347 39899;39900;39901;39902;39903 39901 5 GALTLSSPEVR Unmodified 1128.6139 0.61388734 3241 Q9Y2L1;Q9Y2L1-2 DIS3 Exosome complex exonuclease RRP44 yes no 0 0 0 0 By MS/MS By matching 5.5 0.5 1 1 1 1 43.008 43.142 2 4.8696E-08 11965 20211116_3433_TMUAki_TMT10x_P_F5 147.4 111.52 1655000 2632100 1577.6 2793900 4431900 4033600 2315100 2325600 2503700 1927400 2624500 1541000 2456600 177570 2857400 4196400 3994300 2464800 2438800 2543100 1898800 2528000 1 1 1 1 1 1 1 1 1 1 1 1655000 2632100 1577.6 2793900 4431900 4033600 2315100 2325600 2503700 1927400 2624500 1541000 2456600 177570 2857400 4196400 3994300 2464800 2438800 2543100 1898800 2528000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 137160000 96761000 40398000 6227 3241 5804 33348;33349 39904 39904 1 GALTTVEGLITR Unmodified 1229.698 0.69795133 319 O75312 ZPR1 Zinc finger protein ZPR1 yes yes 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 67.231 67.385 2 0.00044631 22989 20211116_3446_TMUAki_TMT10x_S_F7 87.123 44.727 4189800 8020900 22033 7143400 5566700 4830900 4914300 5968200 5354400 6162300 6581000 3901300 7481100 387180 7314800 5322500 5089600 5032500 6016500 5471400 6010400 6310500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4189800 8020900 22033 7143400 5566700 4830900 4914300 5968200 5354400 6162300 6581000 3901300 7481100 387180 7314800 5322500 5089600 5032500 6016500 5471400 6010400 6310500 1 1 1 1 1 1 1 1 1 1 1 788720000 0 788720000 6228 319 5805 33350;33351 39905 39905 1 GALTVGITNTVGSSISR Unmodified 1631.8842 0.88424855 1525 Q06210;Q06210-2 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.33 0.943 1 2 2 1 57.351 57.15 3 1.1956E-08 20047 20211116_3441_TMUAki_TMT10x_S_F3 119.99 104.73 8943700 13067000 35617 15145000 17287000 15412000 10461000 9968100 11239000 8911500 11045000 8327100 12201000 810370 15308000 16401000 15562000 10992000 10378000 11393000 8746900 10661000 2 2 1 2 2 2 2 2 2 2 2 6613800 9730400 0 11319000 14922000 13546000 8328100 7532100 8671200 6342600 8320500 6157400 9085400 583530 11468000 14137000 13527000 8803000 7926000 8794000 6243500 8037300 1 1 0 1 1 1 1 1 1 1 1 2329900 3336700 35617 3826800 2364400 1866300 2132800 2436000 2568300 2568900 2724400 2169700 3115300 226840 3840100 2263400 2035000 2188900 2452000 2599300 2503400 2623300 1 1 1 1 1 1 1 1 1 1 1 386950000 197100000 189850000 6229 1525 5806 33352;33353;33354 39906;39907 39907 2 GALVAINPGDRK Unmodified 1209.683 0.68296996 1158 P51580 TPMT Thiopurine S-methyltransferase yes yes 0 0 0 1 By MS/MS By matching 8 0 2 1 1 38.725 39.024 3 6.4827E-06 9647 20211116_3436_TMUAki_TMT10x_P_F8 108.56 81.962 478410 703470 7395.7 805520 953830 935560 570740 557600 557200 493600 631440 445500 656790 53215 816500 905390 936570 598540 584090 570090 484720 606830 1 1 1 1 1 1 1 1 1 1 1 478410 703470 7395.7 805520 953830 935560 570740 557600 557200 493600 631440 445500 656790 53215 816500 905390 936570 598540 584090 570090 484720 606830 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 67438000 26086000 41352000 6230 1158 5807 33355;33356 39908 39908 1 GALVTVGQLSCYDQAK Unmodified 1708.8454 0.8454202 3095 Q9UBX3;Q9UBX3-2 SLC25A10 Mitochondrial dicarboxylate carrier yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 61.348 61.95 3 1.3161E-10 20691 20211116_3446_TMUAki_TMT10x_S_F7 125.28 113.3 9960100 16870000 169700 15683000 12797000 16279000 10797000 14590000 12096000 13232000 13988000 9274000 15737000 892400 16092000 12222000 16509000 11097000 14879000 12315000 12979000 13435000 2 2 1 2 2 2 2 2 2 2 2 4880300 7707700 0 6944900 7094000 11471000 6223600 7105500 5801900 6560900 6749800 4543000 7189200 304360 7206500 6771600 11309000 6345400 7428400 5954600 6430200 6481900 1 1 0 1 1 1 1 1 1 1 1 5079800 9162600 169700 8737900 5703300 4807800 4573400 7484800 6293600 6671400 7237800 4731000 8548100 588040 8885300 5450400 5200400 4751400 7450500 6360900 6549100 6952800 1 1 1 1 1 1 1 1 1 1 1 1290300000 637910000 652360000 6231 3095 5808 33357;33358 39909;39910 39910 2 GALVVVNDLGGDFK Unmodified 1402.7456 0.7456298 1161 P51659 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.75 0.433 1 3 2 2 73.807 73.775 2;3 1.1311E-23 23244 20211116_3434_TMUAki_TMT10x_P_F6 174.84 134.79 4841500 7868800 67483 7910200 5729200 5145500 5536300 4759400 4614600 5078300 5999300 4508400 7342500 470900 8025400 5492300 5403800 5597300 4868000 4784000 4946600 5744400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4841500 7868800 67483 7910200 5729200 5145500 5536300 4759400 4614600 5078300 5999300 4508400 7342500 470900 8025400 5492300 5403800 5597300 4868000 4784000 4946600 5744400 2 2 1 2 2 2 2 2 2 2 2 1134800000 0 1134800000 6232 1161 5809 33359;33360;33361;33362 39911;39912;39913;39914 39912 4 GALWAGVAGGGGGGPGAGAAELLK Unmodified 1993.0381 0.038123426 136 O14813 PHOX2A Paired mesoderm homeobox protein 2A yes yes 0 0 0 0 By MS/MS By MS/MS 4 3 2 2 2 2 75.951 75.996 3 9.5227E-17 24602 20211116_3428_TMUAki_TMT10x_P_F1 127.5 108.74 32246000 52106000 421220 49987000 31582000 42033000 35781000 21551000 19686000 24125000 36231000 30027000 48612000 3011500 51026000 30411000 42851000 35576000 23023000 21319000 23456000 34438000 6 6 4 6 6 6 6 6 6 6 6 21042000 33122000 400450 31922000 19512000 32804000 23586000 15154000 14796000 16560000 23416000 19595000 30902000 2081300 32663000 18835000 32967000 23439000 16340000 15743000 16115000 22322000 4 4 3 4 4 4 4 4 4 4 4 11204000 18984000 20776 18066000 12070000 9229300 12195000 6397500 4890000 7565500 12815000 10432000 17710000 930220 18363000 11576000 9883600 12137000 6682400 5575600 7340800 12116000 2 2 1 2 2 2 2 2 2 2 2 3893800000 2292300000 1601400000 6233 136 5810 33363;33364;33365;33366 39915;39916;39917;39918;39919;39920 39917 6 GAMPPAPVPAGTPAPPGPATMMPDGTLGLTPPTTER 3 Oxidation (M) 3498.6833 0.68331218 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 3 0 By MS/MS By MS/MS 6 0 2 1 1 62.261 62.271 4;5 0.0012449 18773 20211116_3445_TMUAki_TMT10x_S_F6 44.955 38.728 5376300 8605400 19889 8572400 7337300 9460900 6557300 6283900 5545900 5584300 7003300 5005800 8029600 351200 8760800 7014700 9511900 6660800 6528500 5738000 5482800 6710700 3 3 1 3 3 3 3 3 3 3 3 4174000 6746700 19889 6912300 5705900 7972500 5455200 4665200 3984800 4326000 5429300 3886300 6296000 351200 7055800 5463700 7982200 5501000 4900000 4169500 4239000 5192700 2 2 1 2 2 2 2 2 2 2 2 1202300 1858700 0 1660100 1631400 1488300 1102100 1618700 1561100 1258400 1574000 1119500 1733600 0 1705000 1550900 1529700 1159800 1628500 1568500 1243800 1518000 1 1 0 1 1 1 1 1 1 1 1 4171900000 1073200000 3098600000 6234 1779 5811 33367;33368 39921;39922;39923 39923 2386;2387;2388 3 GAMPPAPVPAGTPAPPGPATMMPDGTLGLTPPTTER 2 Oxidation (M) 3482.6884 0.68839756 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 2 0 By MS/MS 6.5 0.5 1 1 2 68.103 68.236 4 5.6565E-07 21339 20211116_3445_TMUAki_TMT10x_S_F6 70.833 62.546 3960000 7399500 0 8002700 4701000 4687100 4825900 5503600 4238700 6143700 5404600 3687000 6906700 107810 8071900 4509500 4997700 4870400 5573600 4379200 5973900 5177600 3 3 0 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3960000 7399500 0 8002700 4701000 4687100 4825900 5503600 4238700 6143700 5404600 3687000 6906700 107810 8071900 4509500 4997700 4870400 5573600 4379200 5973900 5177600 3 3 0 3 3 3 3 3 3 3 3 3014200000 0 3014200000 6235 1779 5811 33369;33370 39924;39925;39926 39924 2386;2387;2388 3 GAMPPAPVPAGTPAPPGPATMMPDGTLGLTPPTTER Oxidation (M) 3466.6935 0.69348293 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 1 0 By MS/MS 7.5 0.5 1 1 2 72.717 72.734 4 0.00058997 25343 20211116_3446_TMUAki_TMT10x_S_F7 55.043 48.091 1321700 2456200 0 2067400 2120600 1730800 1429500 1235000 1219000 1423800 1810400 1230600 2290500 112370 2131500 2015400 1772800 1479600 1286300 1270300 1382800 1728100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1321700 2456200 0 2067400 2120600 1730800 1429500 1235000 1219000 1423800 1810400 1230600 2290500 112370 2131500 2015400 1772800 1479600 1286300 1270300 1382800 1728100 1 1 0 1 1 1 1 1 1 1 1 2187600000 0 2187600000 6236 1779 5811 33371;33372 39927 39927 2386;2387;2388 1 GANDFMCDEMER 2 Oxidation (M) 1505.5221 0.5221135 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 2 0 By MS/MS By MS/MS 1.56 0.497 4 5 4 5 31.894 31.868 2;3 0.0005123 6715 20211116_3428_TMUAki_TMT10x_P_F1 80.871 78.236 1738100 2612500 7504.6 3854600 4888100 2839800 2361100 1055700 1284200 1050500 2265000 1618300 2442300 182570 3829400 4623100 2915500 2493800 1163200 1388300 1026200 2154600 8 8 4 8 8 8 8 8 8 8 8 1272100 1954600 6375.7 2846500 4577600 2620900 2059500 742410 929500 765680 1638200 1184400 1827100 151780 2837600 4325900 2641700 2185700 850330 1020200 746850 1558300 4 4 2 4 4 4 4 4 4 4 4 466000 657900 1128.8 1008100 310440 218920 301650 313250 354650 284790 626810 433850 615200 30796 991850 297130 273820 308080 312870 368130 279310 596240 4 4 2 4 4 4 4 4 4 4 4 408940000 330500000 78434000 6237 712 5812 33373;33374;33375;33376;33377;33378;33379;33380;33381 39928;39929;39930;39931;39932;39933;39934 39929 805;806 7 GANDFMCDEMER Oxidation (M) 1489.5272 0.52719888 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 1 0 By MS/MS By MS/MS 1.8 0.6 3 6 1 5 5 37.439 37.344 2;3 7.4277E-07 8655 20211116_3428_TMUAki_TMT10x_P_F1 127.51 121.77 3947800 5713500 1754.4 9242500 10961000 5997500 5246700 2350100 2480400 2109200 5163600 3675300 5344500 358030 9131100 10362000 6228000 5535100 2566300 2739600 2069900 4898100 8 8 1 8 8 8 8 8 8 8 8 3113300 4435700 1754.4 7117300 10458000 5742200 4829500 1936100 2069200 1709600 4043200 2898500 4149000 319210 7050900 9882900 5849100 5107600 2153800 2295900 1679000 3839200 5 5 1 5 5 5 5 5 5 5 5 834530 1277800 0 2125100 503620 255270 417240 414080 411200 399650 1120400 776820 1195500 38819 2080200 479050 378960 427550 412560 443760 390910 1058800 3 3 0 3 3 3 3 3 3 3 3 560790000 466650000 94132000 6238 712 5812 33382;33383;33384;33385;33386;33387;33388;33389;33390;33391 39935;39936;39937;39938;39939;39940;39941;39942;39943 39935 805;806 9 GANDFMCDEMER Unmodified 1473.5323 0.53228426 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 46.808 46.675 2 1.1498E-38 12919 20211116_3440_TMUAki_TMT10x_S_F2 288.11 269.89 3238000 5002200 24427 8066500 4350900 2569100 3096700 1626800 1409400 1626000 3641600 3015100 4679000 306800 7930500 4141800 2935200 3154400 1701500 1586900 1588100 3443800 2 2 2 2 2 2 2 2 2 2 2 1314300 1969000 18222 2952700 3240100 1994300 2335100 1001200 797080 903010 1458800 1223900 1841000 152920 2928400 3085200 2068500 2368300 1065100 901680 885970 1386800 1 1 1 1 1 1 1 1 1 1 1 1923700 3033200 6205.3 5113800 1110700 574800 761540 625600 612310 722980 2182700 1791200 2838100 153880 5002100 1056600 866680 786100 636420 685170 702090 2057000 1 1 1 1 1 1 1 1 1 1 1 310290000 168270000 142020000 6239 712 5812 33392;33393;33394;33395 39944;39945;39946 39946 3 GANFLTQILLRPGASDLTGSFR Unmodified 2333.2492 0.24917883 287 O60762 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 yes yes 0 0 0 1 By MS/MS 6 0 1 1 78.499 78.48 3 0.006889 25482 20211116_3445_TMUAki_TMT10x_S_F6 50.055 38.999 8788200 14664000 146250 13615000 11442000 10602000 12176000 7961200 7416400 8860100 10618000 8183600 13679000 877870 13919000 10997000 10927000 12165000 8254500 7866800 8616200 10143000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8788200 14664000 146250 13615000 11442000 10602000 12176000 7961200 7416400 8860100 10618000 8183600 13679000 877870 13919000 10997000 10927000 12165000 8254500 7866800 8616200 10143000 2 2 1 2 2 2 2 2 2 2 2 867450000 0 867450000 6240 287 5813 33396 39947;39948 39947 2 GANIQLLDLPGIIEGAAQGK Unmodified 1977.0895 0.089490294 1233 P55039 DRG2 Developmentally-regulated GTP-binding protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 80.497 80.505 3 4.7766E-13 26595 20211116_3436_TMUAki_TMT10x_P_F8 131.11 114.17 13457000 21680000 87237 19502000 14568000 19786000 16894000 10702000 10235000 12274000 15539000 12529000 20222000 1047100 20053000 14022000 19935000 16809000 11387000 10892000 11923000 14826000 5 5 2 5 5 5 5 5 5 5 5 5423700 8341700 28677 7937700 4619300 9455600 6025700 4161900 4340200 4864800 6238600 5050200 7782200 462590 8149000 4466200 9420100 5986400 4519700 4556500 4722200 5959400 2 2 1 2 2 2 2 2 2 2 2 8033200 13338000 58560 11564000 9948700 10330000 10869000 6540300 5895000 7409200 9300400 7478900 12439000 584480 11904000 9555300 10515000 10823000 6867000 6335700 7200400 8866300 3 3 1 3 3 3 3 3 3 3 3 5494200000 2545600000 2948600000 6241 1233 5814 33397;33398;33399;33400;33401 39949;39950;39951;39952;39953 39950 5 GANPVEIR Unmodified 854.46102 0.46101552 613 P10809;P10809-2 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 2.2 1.17 2 1 1 1 3 2 32.441 32.331 2 0.00041051 8391 20211116_3429_TMUAki_TMT10x_P_F2 141.52 92.758 4787400 7891200 13773 7569500 7237300 7215400 5963600 3805100 4643800 4164200 6063100 4457500 7362200 424250 7739600 6907000 7295800 6074900 4051600 4832400 4052200 5804900 4 4 3 4 4 4 4 4 4 4 4 3371800 5349100 9507.3 5248800 5793600 5864600 3974000 2698200 3351800 2952300 4181500 3139400 4990900 302520 5370900 5508800 5865300 4106900 2910800 3466600 2872900 4008100 3 3 2 3 3 3 3 3 3 3 3 1415600 2542200 4266.2 2320700 1443600 1350800 1989600 1106800 1291900 1212000 1881600 1318100 2371300 121730 2368700 1398200 1430500 1968000 1140800 1365800 1179300 1796900 1 1 1 1 1 1 1 1 1 1 1 565890000 341020000 224860000 6242 613 5815 33402;33403;33404;33405;33406 39954;39955;39956;39957;39958 39955 5 GANPVEIRR Unmodified 1010.5621 0.56212655 613 P10809;P10809-2 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 3.67 1.37 1 1 2 2 5 1 27.977 27.922 2;3 0.00011596 5921 20211116_3433_TMUAki_TMT10x_P_F5 134.66 86.835 1154900 1924400 9993 1679600 1407400 1910000 1235000 1026200 1171800 1034000 1335100 1075400 1794700 106810 1734200 1345600 1911700 1259800 1088200 1200700 1009500 1282800 6 6 5 6 6 6 6 6 6 6 6 1059500 1750200 9632.2 1513800 1303700 1802100 1112000 943170 1080700 944170 1209500 986520 1632200 98437 1565300 1245700 1798800 1137000 1002300 1105400 922090 1162700 5 5 4 5 5 5 5 5 5 5 5 95488 174210 360.77 165780 103700 107850 123030 83052 91119 89807 125600 88911 162530 8367.9 168850 99943 112880 122800 85896 95318 87432 120090 1 1 1 1 1 1 1 1 1 1 1 196440000 189560000 6879500 6243 613 5816 33407;33408;33409;33410;33411;33412 39959;39960;39961;39962;39963;39964 39962 6 GANRTETVTSFR Unmodified 1337.6688 0.66877646 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 29.242 29.229 3 5.1766E-12 6407 20211116_3433_TMUAki_TMT10x_P_F5 169.58 122.87 194900 296710 7545.5 298110 554480 658870 269420 252370 268050 211830 290980 181530 276870 28227 309410 524950 639820 288150 275890 273570 208560 279990 1 1 1 1 1 1 1 1 1 1 1 194900 296710 7545.5 298110 554480 658870 269420 252370 268050 211830 290980 181530 276870 28227 309410 524950 639820 288150 275890 273570 208560 279990 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26434000 26434000 0 6244 1433 5817 33413;33414 39965 39965 1 GAPAAAAAAAPPPTPAPPPPPAPVAAAAPAR Unmodified 2661.4391 0.43910487 2016 Q6SPF0 SAMD1 Atherin yes yes 0 0 0 0 By matching By MS/MS 8 0 2 1 1 53.532 53.543 4 3.0715E-10 14988 20211116_3447_TMUAki_TMT10x_S_F8 88.001 74.129 1541300 2301400 2261 2622900 1444300 1431000 1397700 1883100 1903400 1810500 1885500 1435100 2148700 128540 2635300 1383900 1541400 1435900 1889600 1913600 1771200 1819400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1541300 2301400 2261 2622900 1444300 1431000 1397700 1883100 1903400 1810500 1885500 1435100 2148700 128540 2635300 1383900 1541400 1435900 1889600 1913600 1771200 1819400 1 1 1 1 1 1 1 1 1 1 1 1777500000 1056500000 720940000 6245 2016 5818 33415;33416 39966 39966 1 GAPAAATAPAPTAHK Unmodified 1330.6993 0.69934831 2336 Q92522 H1FX Histone H1x yes yes 0 0 0 0 By MS/MS By MS/MS 5.75 0.433 1 3 3 1 25.87 25.935 3;4 3.6444E-07 6836 20211116_3433_TMUAki_TMT10x_P_F5 117.93 96.301 4210100 6905900 5879 6669200 4017800 4094000 4197100 5479900 5653800 4775200 6210100 3920000 6443000 351830 6781900 3857300 4360700 4293000 5480600 5707800 4692800 5973400 2 2 2 2 2 2 2 2 2 2 2 295730 513980 3991.7 468810 521360 700140 392480 357150 374080 443910 430570 275380 479430 31398 484920 496900 691280 404280 383030 383370 429970 413610 1 1 1 1 1 1 1 1 1 1 1 3914300 6391900 1887.3 6200400 3496400 3393800 3804600 5122800 5279700 4331300 5779500 3644700 5963600 320430 6297000 3360400 3669400 3888700 5097600 5324400 4262800 5559800 1 1 1 1 1 1 1 1 1 1 1 641440000 280410000 361030000 6246 2336 5819 33417;33418;33419;33420 39967;39968;39969 39967 3 GAPAVVISQGR Unmodified 1053.5931 0.59309232 113 O14531 DPYSL4 Dihydropyrimidinase-related protein 4 yes yes 0 0 0 0 By MS/MS 6.5 0.5 2 2 4 27.829 27.952 2 0.0022263 6351 20211116_3434_TMUAki_TMT10x_P_F6 79.427 68.059 470530 779100 18220 831020 961060 1104600 604190 671090 668170 573930 708210 438230 727180 60850 848210 913510 1098600 633490 701280 678370 564530 681950 5 5 3 5 5 5 5 5 5 5 5 470530 779100 18220 831020 961060 1104600 604190 671090 668170 573930 708210 438230 727180 60850 848210 913510 1098600 633490 701280 678370 564530 681950 5 5 3 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27750000 27750000 0 6247 113 5820 33421;33422;33423;33424 39970;39971;39972;39973 39971 4 GAPEGVIDR Unmodified 912.46649 0.46649483 697 P16615;P16615-5;P16615-2;P16615-3;P16615-4;O14983;O14983-3;O14983-2 ATP2A2;ATP2A1 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 32.847 32.711 2 0.00041186 8475 20211116_3429_TMUAki_TMT10x_P_F2 88.948 56.107 418340 738510 0 693860 488410 392580 514200 480980 477870 406160 631430 389500 688940 33771 706500 468830 420500 519100 482320 493190 399760 604370 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 418340 738510 0 693860 488410 392580 514200 480980 477870 406160 631430 389500 688940 33771 706500 468830 420500 519100 482320 493190 399760 604370 1 1 0 1 1 1 1 1 1 1 1 27007000 479270 26528000 6248 697 5821 33425;33426;33427 39974;39975 39974 2 GAPGVSVDMNITYMSPAK 2 Oxidation (M) 1868.8648 0.86483501 2896 Q9NPJ3;Q9NPJ3-2 ACOT13 Acyl-coenzyme A thioesterase 13;Acyl-coenzyme A thioesterase 13, N-terminally processed yes no 0 0 2 0 By MS/MS 6 0 1 1 50.116 50.266 3 6.065E-06 13924 20211116_3445_TMUAki_TMT10x_S_F6 89.866 79.381 1298300 2109200 20760 2004600 1321200 1191500 1129100 2278900 2183700 1821900 1883400 1209000 1967700 127310 2040300 1263200 1288400 1188000 2248500 2164700 1798200 1826100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1298300 2109200 20760 2004600 1321200 1191500 1129100 2278900 2183700 1821900 1883400 1209000 1967700 127310 2040300 1263200 1288400 1188000 2248500 2164700 1798200 1826100 1 1 1 1 1 1 1 1 1 1 1 141770000 0 141770000 6249 2896 5822 33428 39976 39976 3013;3014 1 GAPLPAPALEEDDEVQITSVSTSVPR Unmodified 2677.3447 0.34465494 2169 Q8IZ40 RCOR2 REST corepressor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 70.735 70.512 3 2.1047E-08 23950 20211116_3429_TMUAki_TMT10x_P_F2 86.825 77.661 5154700 9842900 38791 7079200 6542000 15398000 8327900 12290000 10836000 10867000 9031300 4799400 9174100 424490 7541500 6316200 15104000 8431600 12609000 10850000 10672000 8768000 4 4 2 4 4 4 4 4 4 4 4 3972100 7357200 20854 5139900 4630300 13847000 7140800 10241000 8912900 9152600 7251600 3698100 6856800 299520 5530300 4500300 13488000 7166800 10561000 8930800 8983800 7046800 3 3 1 3 3 3 3 3 3 3 3 1182600 2485700 17937 1939300 1911800 1551700 1187100 2048900 1923300 1714300 1779700 1101200 2317400 124970 2011200 1816000 1615900 1264800 2048100 1919300 1688100 1721300 1 1 1 1 1 1 1 1 1 1 1 740200000 425860000 314330000 6250 2169 5823 33429;33430 39977;39978;39979;39980 39978 4 GAPPSSNIEDFHGLLPK Unmodified 1777.8999 0.89989861 1026 P43243 MATR3 Matrin-3 yes yes 0 0 0 0 By MS/MS By MS/MS 5.77 1.05 2 3 4 4 6 7 58.552 58.823 3;4 9.6244E-30 17362 20211116_3445_TMUAki_TMT10x_S_F6 193.17 178.48 129810000 214070000 1271200 227050000 168100000 207480000 139840000 160740000 154490000 152390000 168630000 120870000 199790000 11591000 230420000 160490000 211520000 143770000 165540000 157030000 149180000 162230000 24 24 13 24 24 24 24 24 24 24 24 69143000 108110000 464410 116080000 106240000 149730000 84783000 82295000 80755000 77817000 84144000 64378000 100910000 6152700 118360000 101320000 148950000 86996000 86941000 82450000 76184000 81066000 12 12 6 12 12 12 12 12 12 12 12 60667000 105950000 806780 110970000 61866000 57746000 55053000 78449000 73738000 74573000 84485000 56490000 98884000 5438800 112060000 59174000 62576000 56777000 78601000 74580000 72992000 81167000 12 12 7 12 12 12 12 12 12 12 12 19350000000 10753000000 8596600000 6251 1026 5824 33431;33432;33433;33434;33435;33436;33437;33438;33439;33440;33441;33442;33443 39981;39982;39983;39984;39985;39986;39987;39988;39989;39990;39991;39992;39993;39994;39995;39996;39997;39998;39999;40000;40001;40002;40003;40004;40005 39999 25 GAPTLPPAWQPFLK Acetyl (Protein N-term) 1563.8449 0.84494991 188 O15392;O15392-5;O15392-4;O15392-2;O15392-7;O15392-6;O15392-3 BIRC5 Baculoviral IAP repeat-containing protein 5 yes no 1 0 0 0 By MS/MS By MS/MS 5 3 2 2 2 2 81.241 81.236 2 8.3559E-05 26315 20211116_3447_TMUAki_TMT10x_S_F8 72.643 48.613 10603000 16712000 294800 15927000 11414000 13656000 12207000 7972100 8385000 9390700 12382000 9873800 15591000 1113900 16269000 10978000 13924000 12222000 8434800 8839300 9113000 11821000 4 4 2 4 4 4 4 4 4 4 4 5563000 8253100 177220 7886900 4501000 8209900 6007400 4147200 4359700 4658000 6000100 5180900 7699700 593400 8076600 4363200 8252500 5963800 4436900 4565600 4528200 5737300 2 2 1 2 2 2 2 2 2 2 2 5039500 8458400 117580 8039900 6912600 5446300 6199200 3825000 4025200 4732700 6382100 4692900 7891000 520510 8192800 6615200 5671900 6258200 3998000 4273700 4584800 6083600 2 2 1 2 2 2 2 2 2 2 2 1264100000 870550000 393510000 6252 188 5825 33444;33445;33446;33447 40006;40007;40008;40009 40009 4 GAPTTSLISVAVTK Unmodified 1343.766 0.76603089 1098 P49419-2;P49419;P49419-4 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 61.194 61.194 2;3 1.1775E-35 20641 20211116_3439_TMUAki_TMT10x_S_F1 234.17 189.86 4511400 6861300 141770 7396600 6208000 8970000 5662600 4941600 5231500 5230700 5480000 4201600 6404300 529920 7531500 5947400 8950400 5759000 5236200 5349900 5096700 5278600 1 1 1 1 1 1 1 1 1 1 1 4511400 6861300 141770 7396600 6208000 8970000 5662600 4941600 5231500 5230700 5480000 4201600 6404300 529920 7531500 5947400 8950400 5759000 5236200 5349900 5096700 5278600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 497270000 497270000 0 6253 1098 5826 33448;33449;33450;33451 40010;40011;40012;40013 40012 4 GAQAAIVVYDITNQETFAR Unmodified 2066.0433 0.043268383 1288 P61020 RAB5B Ras-related protein Rab-5B yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 76.009 75.992 3 1.4775E-20 24477 20211116_3445_TMUAki_TMT10x_S_F6 160.43 143.15 14531000 23511000 234360 22398000 15614000 23783000 17293000 14179000 12987000 14890000 17543000 13530000 21934000 1315400 22949000 15020000 23927000 17320000 14922000 13562000 14513000 16782000 6 6 3 6 6 6 6 6 6 6 6 10239000 15953000 46602 15126000 9725400 18190000 11921000 9606300 8580900 9796500 11899000 9533100 14883000 762290 15535000 9375200 18149000 11873000 10206000 8993500 9559900 11376000 4 4 1 4 4 4 4 4 4 4 4 4291500 7557400 187750 7271700 5888800 5593400 5372600 4572900 4406100 5093900 5644100 3997200 7050800 553150 7413500 5644800 5778700 5446700 4716500 4568700 4953500 5406400 2 2 2 2 2 2 2 2 2 2 2 1267600000 787010000 480560000 6254 1288 5827 33452;33453;33454 40014;40015;40016;40017;40018;40019 40018 6 GAQAAIVVYDITNTDTFAR Unmodified 2025.0167 0.016719282 1150 P51148;P51148-2 RAB5C Ras-related protein Rab-5C yes no 0 0 0 0 By MS/MS By MS/MS 5.75 0.968 1 2 3 2 4 4 76.745 76.772 2;3 2.6244E-68 24813 20211116_3445_TMUAki_TMT10x_S_F6 249.3 222.76 23621000 40991000 265510 32589000 27900000 39270000 31426000 29231000 26089000 28512000 30173000 21995000 38218000 1962800 33940000 26855000 39368000 31527000 30206000 26919000 27876000 28980000 8 8 6 8 8 8 8 8 8 8 8 11952000 19772000 134340 15632000 11539000 24203000 14905000 13911000 12862000 13638000 14760000 11129000 18434000 1074700 16368000 11155000 23897000 14879000 14655000 13241000 13331000 14180000 4 4 3 4 4 4 4 4 4 4 4 11669000 21219000 131170 16957000 16361000 15067000 16522000 15320000 13227000 14874000 15413000 10866000 19784000 888020 17572000 15700000 15471000 16648000 15550000 13678000 14545000 14801000 4 4 3 4 4 4 4 4 4 4 4 5256900000 2439600000 2817300000 6255 1150 5828 33455;33456;33457;33458;33459;33460;33461;33462 40020;40021;40022;40023;40024;40025;40026;40027;40028 40027 9 GAQGVILVYDVTRR Unmodified 1545.8627 0.86272524 2880 Q9NP72;Q9NP72-2 RAB18 Ras-related protein Rab-18 yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 54.05 53.865 3 1.8547E-23 17128 20211116_3429_TMUAki_TMT10x_P_F2 187.16 141.19 17477000 29884000 228430 29704000 24161000 25235000 17983000 26683000 24650000 22893000 26188000 16274000 27885000 1673700 30249000 23020000 26016000 18770000 26943000 24840000 22515000 25215000 7 7 5 7 7 7 7 7 7 7 7 6523200 10779000 93240 10491000 11271000 14846000 8555500 9483900 8865700 8157400 9292500 6074400 10057000 694210 10788000 10744000 14735000 8829800 9873500 9020900 8021600 8950900 3 3 3 3 3 3 3 3 3 3 3 10954000 19105000 135190 19213000 12891000 10389000 9427000 17199000 15784000 14736000 16896000 10199000 17828000 979500 19461000 12276000 11280000 9940200 17069000 15819000 14493000 16264000 4 4 2 4 4 4 4 4 4 4 4 1610000000 955040000 654980000 6256 2880 5829 33463;33464;33465;33466 40029;40030;40031;40032;40033;40034;40035 40031 7 GAQYQPILR Unmodified 1044.5716 0.5716286 811 P26358;P26358-2;P26358-3 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.75 0.829 2 1 1 3 1 37.228 37.446 2 0.00036648 8514 20211116_3445_TMUAki_TMT10x_S_F6 126.28 70.252 1292200 2014900 16712 2244800 2902400 2336900 1405400 1204400 1495300 1108700 1638800 1203300 1881000 144890 2275200 2746300 2349500 1506600 1278800 1522400 1086700 1576500 4 4 3 4 4 4 4 4 4 4 4 1135000 1731600 15966 1940200 2763200 2223900 1268000 1067000 1328400 976160 1421700 1056900 1616600 131420 1968800 2612800 2222100 1366200 1140500 1352100 957110 1368600 3 3 2 3 3 3 3 3 3 3 3 157190 283320 745.73 304580 139210 112970 137380 137380 166900 132510 217130 146370 264450 13476 306350 133480 127460 140360 138300 170280 129610 207900 1 1 1 1 1 1 1 1 1 1 1 98080000 86632000 11448000 6257 811 5830 33467;33468;33469;33470 40036;40037;40038;40039 40039 4 GASGSFVVVQK Unmodified 1077.5819 0.58185894 1930 Q5SSJ5;Q5SSJ5-2;Q5SSJ5-3 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 46.251 46.171 2 1.1529E-18 12043 20211116_3447_TMUAki_TMT10x_S_F8 225.66 152.45 706620 1052200 5307.9 1232400 721720 560280 809000 646040 675620 664310 858530 657980 982450 63742 1234500 694530 614160 811910 653070 699660 648050 822530 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 706620 1052200 5307.9 1232400 721720 560280 809000 646040 675620 664310 858530 657980 982450 63742 1234500 694530 614160 811910 653070 699660 648050 822530 1 1 1 1 1 1 1 1 1 1 1 111830000 0 111830000 6258 1930 5831 33471;33472;33473 40040;40041;40042 40042 3 GASGTFQLK Unmodified 907.47633 0.47633123 1930 Q5SSJ5;Q5SSJ5-2;Q5SSJ5-3 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 43.145 43.39 2 0.00099453 11458 20211116_3436_TMUAki_TMT10x_P_F8 105.94 62.935 4040100 6622300 35507 6506200 5075700 5488500 4595900 5619300 6375100 5206900 5833800 3761900 6178800 365820 6630400 4855800 5657100 4742000 5694400 6388500 5102300 5644400 4 4 2 4 4 4 4 4 4 4 4 1100900 1795700 33905 1689000 2194400 2708800 1499700 1708900 1998100 1421900 1522400 1025300 1675100 138190 1745800 2088700 2674200 1573000 1779400 1994000 1400600 1483300 1 1 1 1 1 1 1 1 1 1 1 2939200 4826600 1602.4 4817300 2881300 2779700 3096200 3910500 4377000 3785000 4311500 2736600 4503700 227630 4884600 2767100 2982900 3169000 3915100 4394500 3701800 4161200 3 3 1 3 3 3 3 3 3 3 3 119360000 45541000 73818000 6259 1930 5832 33474;33475;33476 40043;40044;40045;40046 40043 4 GASIVEDKLVEDLR Unmodified 1542.8253 0.82533668 463 P00367 GLUD1 Glutamate dehydrogenase 1, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 2.78 1.31 2 2 2 2 1 4 5 65.414 65.215 3 9.8569E-14 21809 20211116_3429_TMUAki_TMT10x_P_F2 142.45 100.37 55988000 101720000 846600 72998000 86033000 114780000 74855000 118040000 103940000 101350000 94075000 52137000 94811000 5850300 77124000 82262000 114430000 77414000 119350000 104120000 99667000 91056000 11 11 10 11 11 11 11 11 11 11 11 22892000 40209000 333010 28068000 33359000 65939000 36939000 47312000 42156000 40366000 36896000 21317000 37474000 2353500 30058000 32096000 64420000 37443000 48836000 42472000 39710000 35755000 4 4 3 4 4 4 4 4 4 4 4 33096000 61514000 513580 44931000 52674000 48843000 37916000 70725000 61781000 60980000 57179000 30820000 57337000 3496800 47066000 50166000 50009000 39971000 70512000 61644000 59957000 55301000 7 7 7 7 7 7 7 7 7 7 7 7897600000 4007500000 3890100000 6260 463 5833 33477;33478;33479;33480;33481;33482;33483;33484;33485 40047;40048;40049;40050;40051;40052;40053;40054;40055;40056;40057;40058 40048 12 GASKEILSEVER Unmodified 1316.6936 0.69359423 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 1 By MS/MS By matching 3.33 0.471 2 1 2 1 43.769 43.707 3 0.00024617 11869 20211116_3431_TMUAki_TMT10x_P_F4 86.498 55.43 4170900 7063400 117030 6914800 14643000 19473000 8783000 17580000 16089000 11244000 9866700 3884400 6590300 601530 7252500 13900000 19021000 9441500 17780000 15827000 11242000 9710700 3 3 3 3 3 3 3 3 3 3 3 4170900 7063400 117030 6914800 14643000 19473000 8783000 17580000 16089000 11244000 9866700 3884400 6590300 601530 7252500 13900000 19021000 9441500 17780000 15827000 11242000 9710700 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 488910000 451940000 36968000 6261 1094 5834 33486;33487;33488 40059;40060;40061 40061 3 GASQAGMLAPGTR Oxidation (M) 1231.5979 0.5979197 1802 Q15417;Q15417-3;Q15417-2 CNN3 Calponin-3 yes no 0 0 1 0 By MS/MS 5 0 1 1 30.026 29.958 2 0.0045422 6706 20211116_3433_TMUAki_TMT10x_P_F5 72.34 60.492 132080 218980 0 220040 257740 200350 144210 79371 99598 88343 164240 122970 204330 10754 224110 244150 202600 150830 87073 105570 85910 156440 1 1 0 1 1 1 1 1 1 1 1 132080 218980 0 220040 257740 200350 144210 79371 99598 88343 164240 122970 204330 10754 224110 244150 202600 150830 87073 105570 85910 156440 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17547000 17547000 0 6262 1802 5835 33489 40062 40062 2424 1 GASQAGMLAPGTRR Unmodified 1371.7041 0.70411611 1802 Q15417;Q15417-3;Q15417-2 CNN3 Calponin-3 yes no 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 29.676 29.573 3 6.5328E-07 7387 20211116_3429_TMUAki_TMT10x_P_F2 119.02 103.48 721240 1151500 5813 1097100 971000 1032700 824460 534760 591770 565090 855810 671560 1074300 64927 1122100 927460 1044800 836740 569740 621580 550650 817400 4 4 3 4 4 4 4 4 4 4 4 484770 743420 95.897 704430 708320 774030 556640 340030 385510 397810 542760 451340 693540 39626 722430 675110 774480 567260 369350 405260 386140 518710 2 2 1 2 2 2 2 2 2 2 2 236470 408080 5717.1 392650 262680 258670 267810 194720 206260 167290 313050 220220 380720 25301 399660 252340 270340 269480 200390 216320 164510 298690 2 2 2 2 2 2 2 2 2 2 2 44051000 29810000 14241000 6263 1802 5836 33490;33491;33492;33493 40063;40064;40065;40066 40064 4 GASQAGMTGYGMPR 2 Oxidation (M) 1414.5969 0.59693343 965 P37802;P37802-2;Q9UI15 TAGLN2;TAGLN3 Transgelin-2;Transgelin-3 yes no 0 0 2 0 By MS/MS 4.5 0.5 2 2 4 27.777 27.766 2;3 0.0008252 5398 20211116_3431_TMUAki_TMT10x_P_F4 74.853 62.806 220910 394920 1788.3 446570 636650 439000 300950 228510 222930 219330 313580 205700 368700 25520 451810 602100 442960 320400 242680 233420 214590 299690 4 4 3 4 4 4 4 4 4 4 4 220910 394920 1788.3 446570 636650 439000 300950 228510 222930 219330 313580 205700 368700 25520 451810 602100 442960 320400 242680 233420 214590 299690 4 4 3 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27142000 27142000 0 6264 965 5837 33494;33495;33496;33497 40067;40068;40069;40070 40067 1217;1218 4 GASQAGMTGYGMPR Oxidation (M) 1398.602 0.6020188 965 P37802;P37802-2;Q9UI15 TAGLN2;TAGLN3 Transgelin-2;Transgelin-3 yes no 0 0 1 0 By MS/MS 7 0 2 2 31.609 31.971 2 0.0059829 8358 20211116_3435_TMUAki_TMT10x_P_F7 63.624 44.012 168120 225130 0 288250 350430 266260 219280 115750 116190 136700 195660 156490 210300 10787 289280 332340 269220 226090 125910 125530 132640 186290 2 2 0 2 2 2 2 2 2 2 2 168120 225130 0 288250 350430 266260 219280 115750 116190 136700 195660 156490 210300 10787 289280 332340 269220 226090 125910 125530 132640 186290 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3325200 3325200 0 6265 965 5837 33498;33499 40071;40072 40072 1217;1218 2 GASQAGMTGYGMPR Unmodified 1382.6071 0.60710418 965 P37802;P37802-2;Q9UI15 TAGLN2;TAGLN3 Transgelin-2;Transgelin-3 yes no 0 0 0 0 By MS/MS 7 0 1 1 36.459 36.897 2 2.8945E-33 10090 20211116_3435_TMUAki_TMT10x_P_F7 232.71 215.2 396110 610180 19597 1105700 1879900 937650 809880 417370 391540 344410 666900 368910 571220 65240 1090500 1776400 953890 864500 448430 426400 339380 634810 2 2 1 2 2 2 2 2 2 2 2 396110 610180 19597 1105700 1879900 937650 809880 417370 391540 344410 666900 368910 571220 65240 1090500 1776400 953890 864500 448430 426400 339380 634810 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35436000 35436000 0 6266 965 5837 33500 40073;40074 40073 2 GATELTHEDYMEGILEVQAK Oxidation (M) 2249.0522 0.05217809 711 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 1 0 By MS/MS By matching 3 0.707 1 2 1 3 1 56.206 56.028 3 1.3342E-24 18024 20211116_3429_TMUAki_TMT10x_P_F2 168.69 157.74 11669000 20171000 37662 18883000 16674000 29462000 15566000 18122000 19460000 18243000 15939000 10865000 18817000 1034600 19513000 15959000 29106000 15968000 19001000 19502000 17812000 15485000 8 8 3 8 8 8 8 8 8 8 8 11669000 20171000 37662 18883000 16674000 29462000 15566000 18122000 19460000 18243000 15939000 10865000 18817000 1034600 19513000 15959000 29106000 15968000 19001000 19502000 17812000 15485000 8 8 3 8 8 8 8 8 8 8 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2239300000 2025500000 213790000 6267 711 5838 33501;33502;33503;33504 40075;40076;40077;40078;40079;40080;40081;40082 40075 797 8 GATQQILDEAER Unmodified 1329.6525 0.6524577 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 2.15 0.948 4 4 4 1 7 6 44.002 43.873 2;3 4.2935E-73 11520 20211116_3428_TMUAki_TMT10x_P_F1 335.67 277.71 18473000 29668000 155820 38881000 34702000 34098000 20177000 31023000 30984000 25067000 29879000 17200000 27718000 1706100 38943000 32906000 34962000 21560000 31519000 31009000 24728000 28857000 13 13 8 13 13 13 13 13 13 13 13 9489900 14712000 86184 19249000 28601000 28137000 14990000 16116000 15742000 12847000 15289000 8836200 13745000 1073500 19450000 27083000 27846000 15940000 16895000 15966000 12681000 14763000 6 6 4 6 6 6 6 6 6 6 6 8983300 14956000 69637 19632000 6101400 5960800 5186700 14907000 15242000 12221000 14590000 8363800 13973000 632630 19493000 5822700 7116700 5620200 14624000 15043000 12046000 14094000 7 7 4 7 7 7 7 7 7 7 7 12655000000 8741700000 3913100000 6268 1429 5839 33505;33506;33507;33508;33509;33510;33511;33512;33513;33514;33515;33516;33517 40083;40084;40085;40086;40087;40088;40089;40090;40091;40092;40093;40094;40095;40096 40083 14 GATYGKPVHHGVNQLK Unmodified 1704.906 0.90598704 1308 P61313;P61313-2 RPL15 60S ribosomal protein L15 yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 3 1 31.174 31.073 4;5 9.7427E-11 6360 20211116_3428_TMUAki_TMT10x_P_F1 134.02 105.81 2906600 4863900 57871 4381900 6056100 5160700 3657600 2519800 2720000 2627500 3535600 2706800 4536700 338630 4515900 5750100 5150000 3806500 2698400 2837100 2561700 3385400 4 4 3 4 4 4 4 4 4 4 4 2490900 4139500 57871 3608600 5534100 4715000 3055100 2105200 2300000 2251100 2968800 2319700 3860600 303070 3735400 5247600 4676400 3205200 2276500 2396600 2192600 2843100 3 3 3 3 3 3 3 3 3 3 3 415710 724380 0 773280 522000 445730 602480 414500 419970 376330 566840 387060 676110 35563 780530 502510 473580 601260 421870 440440 369120 542270 1 1 0 1 1 1 1 1 1 1 1 767480000 690540000 76944000 6269 1308 5840 33518;33519;33520;33521 40097;40098;40099;40100 40097 4 GAVAEDGDELRTEPEAK Unmodified 1785.8381 0.83808621 829 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 3 1 36.611 36.481 3;4 2.5912E-47 10060 20211116_3429_TMUAki_TMT10x_P_F2 248.1 212.21 2995600 4486100 79069 6817100 16200000 7833800 4623300 4539800 7015400 3176000 6138900 2789700 4194700 488390 6805200 15246000 7843800 5369000 4741200 7001200 3158100 5949100 4 4 3 4 4 4 4 4 4 4 4 2361200 3457600 58160 5123700 15445000 7238300 3733500 3458800 5368700 2502200 4643900 2198800 3232600 414610 5140900 14518000 7158500 4450000 3678800 5364400 2483200 4502200 3 3 2 3 3 3 3 3 3 3 3 634420 1028500 20910 1693500 755020 595500 889800 1081000 1646700 673780 1495000 590860 962170 73774 1664200 728600 685290 918950 1062400 1636800 674820 1446900 1 1 1 1 1 1 1 1 1 1 1 641750000 536570000 105180000 6270 829 5841 33522;33523;33524;33525 40101;40102;40103;40104 40102 4 GAVAEDGDELRTEPEAKK Unmodified 1913.933 0.93304923 829 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes yes 0 0 0 2 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 35.311 35.204 4 6.4075E-12 11079 20211116_3441_TMUAki_TMT10x_S_F3 131.71 102.83 2014600 3211100 1583.6 3696600 7790200 4559700 2850600 2922900 3714900 2250200 3684600 1875700 2998100 235410 3749700 7344600 4555100 3176500 3034300 3740400 2225400 3555300 3 3 2 3 3 3 3 3 3 3 3 1474800 2361700 1257.3 2697400 7251500 4041100 2282900 2232500 2733300 1700800 2796900 1373100 2205000 190370 2748200 6827400 3993300 2589400 2345200 2763200 1683000 2696100 2 2 1 2 2 2 2 2 2 2 2 539830 849340 326.33 999170 538630 518610 567750 690440 981610 549400 887650 502640 793080 45043 1001500 517220 561830 587190 689100 977180 542390 859190 1 1 1 1 1 1 1 1 1 1 1 201710000 133990000 67719000 6271 829 5842 33526;33527 40105;40106;40107 40107 3 GAVAIADAIR Unmodified 955.54508 0.5450795 1040 P46060 RANGAP1 Ran GTPase-activating protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 46.765 46.923 2 3.6012E-07 12280 20211116_3444_TMUAki_TMT10x_S_F5 114.5 80.701 3663200 5595300 0 7466200 10529000 9248100 4966200 5122800 5365900 4437500 5022800 3410300 5228000 343220 7511200 9951800 9218700 5340700 5396200 5429200 4362100 4856000 1 1 0 1 1 1 1 1 1 1 1 3663200 5595300 0 7466200 10529000 9248100 4966200 5122800 5365900 4437500 5022800 3410300 5228000 343220 7511200 9951800 9218700 5340700 5396200 5429200 4362100 4856000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 276700000 276700000 0 6272 1040 5843 33528;33529;33530 40108;40109;40110 40110 3 GAVAMAETLK Oxidation (M) 1005.5165 0.51648149 1040 P46060 RANGAP1 Ran GTPase-activating protein 1 yes yes 0 0 1 0 By MS/MS 4 0 1 1 37.687 37.844 2 0.010586 9874 20211116_3442_TMUAki_TMT10x_S_F4 72.485 49.655 140750 253050 0 259190 145890 130350 134980 163870 182490 162590 196090 131020 236140 7776.9 262060 139350 141490 138950 164880 184060 158850 188740 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 140750 253050 0 259190 145890 130350 134980 163870 182490 162590 196090 131020 236140 7776.9 262060 139350 141490 138950 164880 184060 158850 188740 1 1 0 1 1 1 1 1 1 1 1 8128500 0 8128500 6273 1040 5844 33531 40111 40111 1345 1 GAVDGGLSIPHSTK Unmodified 1337.6939 0.69392858 1051 P46777 RPL5 60S ribosomal protein L5 yes yes 0 0 0 0 By MS/MS By MS/MS 5.71 1.16 1 2 3 1 4 3 39.408 39.464 3 3.2511E-14 9365 20211116_3444_TMUAki_TMT10x_S_F5 151.99 95.736 3860200 5776900 52146 7147000 10257000 8520200 4237300 4144200 5019300 3812700 5342400 3594600 5395600 457980 7214900 9686700 8496800 4637100 4424400 5083600 3737300 5143700 4 4 3 4 4 4 4 4 4 4 4 3209100 4716900 51783 5822700 9739000 7970200 3692700 3477100 4090200 3185900 4379600 2988400 4405500 405530 5894100 9189300 7886100 4074100 3753300 4153900 3123600 4215900 3 3 2 3 3 3 3 3 3 3 3 651090 1060000 362.73 1324300 518030 550000 544640 667080 929180 626740 962810 606230 990110 52454 1320800 497400 610700 562970 671120 929650 613760 927750 1 1 1 1 1 1 1 1 1 1 1 790690000 603930000 186760000 6274 1051 5845 33532;33533;33534;33535;33536;33537;33538 40112;40113;40114;40115;40116;40117;40118;40119 40117 8 GAVEALAAALAHISGATSVDQR Unmodified 2107.1022 0.10218025 2918 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 79.507 79.487 3 9.7205E-11 27543 20211116_3429_TMUAki_TMT10x_P_F2 113.71 93.047 4938900 7368300 284420 8647300 4635500 7693800 6096400 4647000 4132700 5318200 6274300 4600700 6880200 670290 8717100 4498700 7828300 6046700 4898600 4366200 5166400 5986300 2 2 2 2 2 2 2 2 2 2 2 2794800 3707600 96885 4587400 2044600 5140900 3159300 2403600 2098700 2797300 3278700 2603000 3462900 311500 4626000 1994400 5141600 3113500 2593800 2223300 2715800 3126300 1 1 1 1 1 1 1 1 1 1 1 2144000 3660700 187540 4059900 2590800 2552900 2937100 2243400 2034000 2520900 2995500 1997700 3417300 358790 4091100 2504300 2686700 2933100 2304800 2142900 2450600 2859900 1 1 1 1 1 1 1 1 1 1 1 2581700000 1602400000 979240000 6275 2918 5846 33539;33540;33541 40120;40121;40122 40120 3 GAVECCPNCR Unmodified 1221.4689 0.46889614 889 P31689;P31689-2 DNAJA1 DnaJ homolog subfamily A member 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 27.436 27.153 2 0.00088971 7982 20211116_3441_TMUAki_TMT10x_S_F3 98.033 57.988 43879 89708 1937 74377 47727 40068 50752 37929 39262 41893 49685 40870 83650 5497 76446 45956 42887 50966 38790 40815 40751 47606 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 43879 89708 1937 74377 47727 40068 50752 37929 39262 41893 49685 40870 83650 5497 76446 45956 42887 50966 38790 40815 40751 47606 1 1 1 1 1 1 1 1 1 1 1 2331100 0 2331100 6276 889 5847 33542 40123 40123 1 GAVHQLCQSLAGK Unmodified 1367.698 0.6979681 573 P09417;P09417-2 QDPR Dihydropteridine reductase yes no 0 0 0 0 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 40.924 40.938 3 6.5244E-15 10329 20211116_3428_TMUAki_TMT10x_P_F1 169.98 126.9 7311400 11184000 11245 13803000 15856000 13522000 8215400 11964000 12577000 10181000 11943000 6807000 10445000 649640 13892000 15007000 13758000 8867800 12189000 12581000 10017000 11541000 6 6 2 6 6 6 6 6 6 6 6 3932700 6016900 11245 7329500 13479000 11348000 6090900 6107100 6444600 5230700 6166100 3661600 5619300 434450 7444700 12737000 11195000 6575500 6447600 6530900 5144700 5956800 3 3 2 3 3 3 3 3 3 3 3 3378700 5166800 0 6473600 2377400 2174000 2124500 5856800 6132300 4950500 5777000 3145500 4826000 215190 6447600 2269900 2562700 2292300 5741800 6050600 4872300 5583900 3 3 0 3 3 3 3 3 3 3 3 2129600000 1533300000 596260000 6277 573 5848 33543;33544;33545;33546;33547;33548 40124;40125;40126;40127;40128;40129 40124 6 GAVIATELK Unmodified 900.52803 0.52803245 185 O15371;O15371-2;O15371-3 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 1 3 47.385 47.554 2 3.3206E-05 13736 20211116_3442_TMUAki_TMT10x_S_F4 121.09 57.612 5124700 8098000 55272 8810900 7663500 7690700 5656400 5322300 5187100 4730200 6697600 4772000 7559000 511940 8921500 7301000 7850600 5827900 5513100 5351100 4644100 6414200 2 2 2 2 2 2 2 2 2 2 2 3080100 4463300 38036 5172500 5515800 5829500 3610800 3116300 2888700 2771000 3772900 2868200 4167400 324930 5236500 5243200 5837200 3739900 3295000 3001700 2720600 3612200 1 1 1 1 1 1 1 1 1 1 1 2044600 3634700 17236 3638400 2147700 1861200 2045500 2206000 2298400 1959100 2924800 1903800 3391600 187020 3684900 2057800 2013400 2088000 2218100 2349400 1923600 2802000 1 1 1 1 1 1 1 1 1 1 1 442570000 205810000 236760000 6278 185 5849 33549;33550;33551;33552 40130;40131;40132 40131 3 GAVITQIR Unmodified 856.51305 0.51305109 1467 Q00341;Q00341-2 HDLBP Vigilin yes no 0 0 0 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 34.297 34.798 2 0.00367 7887 20211116_3436_TMUAki_TMT10x_P_F8 97.068 48.307 366150 603790 5772 657160 351410 316530 386720 302110 311020 293370 456590 340940 563600 32757 661550 338010 343150 388070 307630 324890 286880 435950 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 366150 603790 5772 657160 351410 316530 386720 302110 311020 293370 456590 340940 563600 32757 661550 338010 343150 388070 307630 324890 286880 435950 2 2 1 2 2 2 2 2 2 2 2 12786000 7009800 5776300 6279 1467 5850 33553;33554;33555;33556 40133;40134;40135;40136 40134 4 GAVIVVSHDAR Unmodified 1122.6146 0.61455605 2241 Q8NE71;Q8NE71-2 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.667 1 4 4 4 5 29.446 29.452 2;3 1.0011E-15 6785 20211116_3431_TMUAki_TMT10x_P_F4 204.79 170.22 6978900 11461000 5433.6 10532000 8928800 13554000 7548400 6474500 6676100 7385200 8776500 6497900 10691000 591850 10855000 8525800 13462000 7701800 6967300 6904500 7175300 8401400 10 10 2 10 10 10 10 10 10 10 10 2561800 3976800 4272 4082500 4222600 8570000 2615400 2303900 2383700 3366700 3153200 2385200 3711100 230500 4224500 4008100 8312900 2729800 2690500 2462500 3244300 3018000 5 5 1 5 5 5 5 5 5 5 5 4417100 7484500 1161.6 6449300 4706200 4984000 4933000 4170500 4292400 4018500 5623300 4112700 6980000 361350 6630500 4517700 5149400 4972100 4276800 4442000 3930900 5383400 5 5 1 5 5 5 5 5 5 5 5 1230300000 762460000 467810000 6280 2241 5851 33557;33558;33559;33560;33561;33562;33563;33564;33565 40137;40138;40139;40140;40141;40142;40143;40144;40145;40146 40139 10 GAVLPHFNVLFDGLSK Unmodified 1712.925 0.92499115 1551 Q08AM6 VAC14 Protein VAC14 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 77.146 77.047 3 3.2664E-05 28057 20211116_3441_TMUAki_TMT10x_S_F3 85.734 61.175 8596100 16072000 272430 15095000 10837000 12537000 11367000 7488700 7353600 8626000 10976000 8005900 14993000 997960 15430000 10421000 12816000 11379000 7902800 7785200 8377800 10476000 2 2 2 2 2 2 2 2 2 2 2 4427300 8385900 163950 7810500 5168200 7879300 5853500 3633600 3839900 4539100 5524400 4123500 7822800 530220 8009600 4982700 7927300 5839300 3935700 4054400 4395800 5277100 1 1 1 1 1 1 1 1 1 1 1 4168800 7685700 108480 7284800 5668900 4657300 5514000 3855100 3513700 4087000 5451300 3882400 7170000 467730 7420700 5438200 4888600 5539300 3967100 3730800 3982000 5198700 1 1 1 1 1 1 1 1 1 1 1 1204100000 480060000 724080000 6281 1551 5852 33566;33567 40147;40148 40148 2 GAVLPIR Unmodified 724.45956 0.45955895 885 P31153;P31153-2 MAT2A S-adenosylmethionine synthase isoform type-2 yes no 0 0 0 0 By MS/MS By MS/MS 5.67 2.21 1 1 1 2 2 2 5 4 39.163 39.366 2 0.001553 11139 20211116_3435_TMUAki_TMT10x_P_F7 136.19 136.19 10520000 15634000 76341 16407000 13175000 14264000 10885000 9994900 10084000 10244000 12772000 9795700 14591000 951990 16651000 12578000 14567000 11136000 10385000 10389000 9994700 12237000 9 9 6 9 9 9 9 9 9 9 9 5296600 7744200 4702.9 7957400 7594800 8964100 4632800 5082300 5118400 5174700 6314900 4931600 7227000 464310 8117800 7207300 8982700 4869200 5366000 5228300 5050100 6054700 4 4 3 4 4 4 4 4 4 4 4 5223600 7889700 71638 8449800 5580600 5299700 6252200 4912600 4965700 5069400 6456800 4864100 7364000 487680 8533500 5371100 5584600 6267000 5019000 5160900 4944600 6182500 5 5 3 5 5 5 5 5 5 5 5 1476500000 716040000 760470000 6282 885 5853 33568;33569;33570;33571;33572;33573;33574;33575;33576 40149;40150;40151;40152;40153;40154;40155;40156;40157 40151 9 GAVLVCDMSSNFLSKPVDVSK Unmodified 2252.1181 0.11808959 3335 Q9Y617;Q9Y617-2 PSAT1 Phosphoserine aminotransferase yes no 0 0 0 1 By MS/MS By MS/MS 4 3.21 3 1 1 2 4 3 73.106 73.098 3;4 6.8418E-35 23436 20211116_3428_TMUAki_TMT10x_P_F1 189.44 162.4 60388000 99445000 1090600 110920000 81942000 76932000 83239000 29554000 23782000 38824000 66461000 56232000 92835000 5903900 111840000 78641000 79405000 82524000 32717000 28311000 37536000 62791000 9 9 7 9 9 9 9 9 9 9 9 28813000 46429000 647540 51157000 42657000 50812000 49011000 11748000 9356500 16871000 29443000 26833000 43341000 3186200 51850000 41101000 50907000 48154000 14069000 11967000 16266000 27781000 3 3 3 3 3 3 3 3 3 3 3 31575000 53016000 443080 59764000 39284000 26120000 34228000 17806000 14426000 21953000 37018000 29399000 49494000 2717800 59989000 37540000 28498000 34370000 18648000 16344000 21269000 35010000 6 6 4 6 6 6 6 6 6 6 6 7110400000 4301700000 2808800000 6283 3335 5854 33577;33578;33579;33580;33581;33582;33583 40158;40159;40160;40161;40162;40163;40164;40165;40166;40167 40158 10 GAVLVCDMSSNFLSKPVDVSK Oxidation (M) 2268.113 0.11300421 3335 Q9Y617;Q9Y617-2 PSAT1 Phosphoserine aminotransferase yes no 0 0 1 1 By MS/MS By MS/MS 7.67 0.471 2 4 4 2 62.81 63.1 3;4 5.0773E-19 20651 20211116_3435_TMUAki_TMT10x_P_F7 141.86 132.68 37938000 64550000 265980 56318000 64505000 111270000 56670000 92233000 85182000 88721000 70730000 35323000 60201000 3349500 58857000 61642000 109540000 58775000 94632000 84898000 86795000 68678000 9 9 3 9 9 9 9 9 9 9 9 25246000 42254000 194680 35880000 48806000 94454000 44001000 59090000 54815000 57574000 45501000 23505000 39404000 2228800 37930000 46664000 91816000 45218000 61818000 54961000 56293000 44181000 6 6 2 6 6 6 6 6 6 6 6 12692000 22296000 71293 20438000 15699000 16816000 12669000 33143000 30367000 31147000 25229000 11818000 20798000 1120800 20927000 14978000 17721000 13557000 32814000 29936000 30502000 24497000 3 3 1 3 3 3 3 3 3 3 3 7953300000 5237900000 2715400000 6284 3335 5854 33584;33585;33586;33587;33588;33589 40168;40169;40170;40171;40172;40173;40174;40175;40176 40168 3287 9 GAVSAEQVIAGFNR Unmodified 1417.7314 0.73137672 3123 Q9UHV9 PFDN2 Prefoldin subunit 2 yes yes 0 0 0 0 By MS/MS By MS/MS 6.73 0.914 3 4 11 4 8 14 65.948 66.108 2;3 5.0151E-85 17505 20211116_3434_TMUAki_TMT10x_P_F6 349.14 276.91 73715000 124220000 577020 125140000 90086000 106500000 79578000 85131000 81951000 81741000 94888000 68639000 115910000 6585900 127320000 86138000 109170000 81342000 87533000 83726000 79972000 91135000 25 25 15 25 25 25 25 25 25 25 25 32008000 50921000 340340 52051000 42554000 65932000 39519000 36263000 36030000 35184000 39988000 29805000 47519000 3097700 53228000 40746000 65644000 40137000 38335000 36947000 34407000 38453000 8 8 6 8 8 8 8 8 8 8 8 41708000 73298000 236680 73090000 47532000 40572000 40058000 48868000 45921000 46557000 54900000 38834000 68394000 3488200 74092000 45392000 43524000 41205000 49198000 46779000 45565000 52682000 17 17 9 17 17 17 17 17 17 17 17 26805000000 13549000000 13256000000 6285 3123 5855 33590;33591;33592;33593;33594;33595;33596;33597;33598;33599;33600;33601;33602;33603;33604;33605;33606;33607;33608;33609;33610;33611 40177;40178;40179;40180;40181;40182;40183;40184;40185;40186;40187;40188;40189;40190;40191;40192;40193;40194;40195;40196;40197;40198;40199;40200;40201;40202;40203 40180 27 GAVVGIDLGTTNSCVAVMEGK Oxidation (M) 2093.0133 0.013290163 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 4.83 0.687 2 3 1 2 4 61.853 61.901 2;3 1.0504E-43 18467 20211116_3444_TMUAki_TMT10x_S_F5 200.13 176.9 19649000 33314000 108830 30872000 25116000 31728000 24909000 27506000 27173000 27310000 27161000 18295000 31076000 1624300 31680000 24072000 32174000 25347000 28173000 27544000 26681000 26201000 9 9 4 9 9 9 9 9 9 9 9 7118500 11313000 75189 11196000 8275800 15708000 9562500 9830900 9563300 9761900 9228800 6628100 10556000 608220 11498000 7967700 15592000 9632400 10290000 9717100 9536800 8913100 3 3 2 3 3 3 3 3 3 3 3 12531000 22001000 33636 19675000 16840000 16019000 15347000 17675000 17610000 17548000 17932000 11667000 20521000 1016100 20182000 16104000 16582000 15715000 17883000 17827000 17144000 17288000 6 6 2 6 6 6 6 6 6 6 6 5255900000 2278300000 2977600000 6286 972 5856 33612;33613;33614;33615;33616;33617 40204;40205;40206;40207;40208;40209;40210;40211;40212 40211 1235 9 GAVVPPVHDIYR Unmodified 1321.7143 0.71427009 1583 Q12996 CSTF3 Cleavage stimulation factor subunit 3 yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 39.696 39.787 3 0.00012822 9490 20211116_3434_TMUAki_TMT10x_P_F6 90.689 74.311 1537500 2303500 59849 2657600 3334100 3121900 1873900 1907100 1939000 1693200 2126600 1432000 2150700 208410 2693100 3163800 3124400 1979100 1993900 1976400 1662500 2045700 3 3 3 3 3 3 3 3 3 3 3 1341000 1983800 57451 2299200 3133200 2971700 1688900 1708900 1691200 1502000 1864800 1249000 1852300 189820 2333300 2971500 2957500 1788700 1795000 1726600 1475500 1793600 2 2 2 2 2 2 2 2 2 2 2 196540 319720 2397.9 358400 200830 150140 184960 198230 247780 191180 261780 183020 298470 18589 359780 192310 166880 190390 198910 249820 187010 252100 1 1 1 1 1 1 1 1 1 1 1 231570000 139450000 92124000 6287 1583 5857 33618;33619;33620 40213;40214;40215;40216 40215 4 GAVYSFDPVGSYQR Unmodified 1544.726 0.72595699 745 P20618 PSMB1 Proteasome subunit beta type-1 yes yes 0 0 0 0 By MS/MS 7 0 2 2 55.88 56.406 2;3 2.7772E-06 18458 20211116_3446_TMUAki_TMT10x_S_F7 115.39 91.234 2152700 3142100 17847 3308100 1732800 1605300 1672700 1585500 2016600 1737200 2309300 2004500 2932500 189220 3337600 1661000 1740000 1710500 1617500 2046900 1690400 2218700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2152700 3142100 17847 3308100 1732800 1605300 1672700 1585500 2016600 1737200 2309300 2004500 2932500 189220 3337600 1661000 1740000 1710500 1617500 2046900 1690400 2218700 1 1 1 1 1 1 1 1 1 1 1 342050000 0 342050000 6288 745 5858 33621;33622 40217;40218 40217 2 GAVYSMVEFNGK Oxidation (M) 1316.6071 0.60708741 1847 Q16531;Q16531-2 DDB1 DNA damage-binding protein 1 yes no 0 0 1 0 By MS/MS By MS/MS 5.5 0.5 2 2 1 3 49.175 49.325 2;3 5.4508E-12 14362 20211116_3433_TMUAki_TMT10x_P_F5 127.42 97.88 3056000 5251600 71649 5316000 3161500 2957400 2852000 4089900 4109400 3915400 4268800 2846000 4900500 321620 5383400 3028000 3183700 2948000 4095900 4131300 3831200 4113000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3056000 5251600 71649 5316000 3161500 2957400 2852000 4089900 4109400 3915400 4268800 2846000 4900500 321620 5383400 3028000 3183700 2948000 4095900 4131300 3831200 4113000 2 2 2 2 2 2 2 2 2 2 2 373490000 0 373490000 6289 1847 5859 33623;33624;33625;33626 40219;40220;40221;40222;40223 40219 2455 5 GAWSNVLR Unmodified 901.477 0.47699993 639;502;638 P05141;P12235;P12236 SLC25A5;SLC25A4;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 46.976 46.887 2 0.0020109 12744 20211116_3428_TMUAki_TMT10x_P_F1 114.78 75.965 10592000 17725000 138180 21966000 25766000 19815000 14187000 12228000 11446000 10631000 16118000 9862600 16555000 1173900 22077000 24420000 20148000 14911000 12767000 11930000 10449000 15404000 5 5 4 5 5 5 5 5 5 5 5 6976300 11411000 76831 14043000 22854000 17722000 11797000 8699900 8105600 7408900 10794000 6496200 10657000 872360 14196000 21640000 17625000 12430000 9262200 8503000 7289100 10329000 3 3 3 3 3 3 3 3 3 3 3 3615400 6314400 61353 7922500 2912500 2092700 2390500 3527800 3340500 3222100 5324800 3366400 5898000 301540 7881500 2780300 2523800 2481500 3505300 3427200 3159500 5075200 2 2 1 2 2 2 2 2 2 2 2 613840000 394370000 219470000 6290 502;638;639 5860 33627;33628;33629;33630;33631;33632 40224;40225;40226;40227;40228 40224 5 GAYDIFLNAK Unmodified 1110.571 0.5709599 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 3 2 1 65.687 66.296 2;3 1.9162E-07 22526 20211116_3446_TMUAki_TMT10x_S_F7 120.12 85.866 18133000 29637000 134980 27612000 17173000 30445000 20187000 20901000 18540000 19888000 20097000 16885000 27646000 1590400 28354000 16549000 30626000 20268000 21702000 18989000 19465000 19339000 3 3 2 3 3 3 3 3 3 3 3 18133000 29637000 134980 27612000 17173000 30445000 20187000 20901000 18540000 19888000 20097000 16885000 27646000 1590400 28354000 16549000 30626000 20268000 21702000 18989000 19465000 19339000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1131600000 1131600000 0 6291 1018 5861 33633;33634;33635 40229;40230;40231;40232 40232 4 GAYGGGYGGYDDYNGYNDGYGFGSDR Unmodified 2716.0375 0.037467316 894 P31943 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 3.62 0.857 1 2 4 1 4 4 61.019 60.88 2;3 1.2077E-87 18897 20211116_3431_TMUAki_TMT10x_P_F4 263.75 260.96 15451000 25916000 71796 25387000 15125000 23717000 15986000 15440000 15965000 17494000 17761000 14385000 24181000 1121800 25912000 14514000 24078000 16170000 16177000 16306000 17001000 17078000 10 10 3 10 10 10 10 10 10 10 10 8719800 15417000 71796 14925000 9784000 17827000 10624000 8740600 9332100 10065000 10208000 8118900 14384000 728330 15304000 9401800 17778000 10692000 9385100 9581500 9775200 9820500 6 6 3 6 6 6 6 6 6 6 6 6731100 10499000 0 10462000 5341100 5890200 5362500 6699300 6632800 7429000 7552900 6266100 9796800 393510 10607000 5112400 6300700 5477600 6792400 6724700 7225500 7257500 4 4 0 4 4 4 4 4 4 4 4 5721900000 3862600000 1859200000 6292 894 5862 33636;33637;33638;33639;33640;33641;33642;33643 40233;40234;40235;40236;40237;40238;40239;40240;40241;40242;40243 40238 11 GAYQDRDKPAQIR Unmodified 1516.7746 0.77463852 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 2 By MS/MS 4.5 0.5 2 2 4 29.298 29.284 3;4 6.339E-19 6410 20211116_3433_TMUAki_TMT10x_P_F5 188.48 160.62 906220 1437500 13900 1356700 1501000 1512400 1015200 760720 882070 741030 1069200 843870 1341000 95164 1392100 1427800 1514200 1051100 810790 909820 724540 1025600 3 3 2 3 3 3 3 3 3 3 3 906220 1437500 13900 1356700 1501000 1512400 1015200 760720 882070 741030 1069200 843870 1341000 95164 1392100 1427800 1514200 1051100 810790 909820 724540 1025600 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 68467000 68467000 0 6293 1147 5863 33644;33645;33646;33647 40244;40245;40246 40246 3 GCAFVTFTTR Unmodified 1158.5492 0.5491786 2371 Q92879;Q92879-4;Q92879-5;Q92879-2;Q92879-3;Q92879-6 CELF1 CUGBP Elav-like family member 1 yes no 0 0 0 0 By matching By MS/MS 2.67 0.471 1 2 1 2 50.667 50.463 2 3.8887E-05 14491 20211116_3440_TMUAki_TMT10x_S_F2 134.66 122.03 6413700 11660000 146750 11229000 6758100 6506800 6073000 9606700 9286200 7926900 9858100 5972900 10878000 673330 11415000 6471600 6989700 6295400 9560700 9326800 7811000 9492000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6413700 11660000 146750 11229000 6758100 6506800 6073000 9606700 9286200 7926900 9858100 5972900 10878000 673330 11415000 6471600 6989700 6295400 9560700 9326800 7811000 9492000 3 3 3 3 3 3 3 3 3 3 3 513160000 140760000 372400000 6294 2371 5864 33648;33649;33650 40247;40248;40249 40247 3 GCALQCAILSPAFK Unmodified 1534.7636 0.76360482 916;2345;442 P34932;Q92598;Q92598-2;Q92598-3;Q92598-4;O95757 HSPA4;HSPH1;HSPA4L Heat shock 70 kDa protein 4;Heat shock protein 105 kDa;Heat shock 70 kDa protein 4L no no 0 0 0 0 By MS/MS By MS/MS 3 1.73 3 4 13 2 17 5 68.622 68.411 2;3 1.073E-37 21708 20211116_3440_TMUAki_TMT10x_S_F2 254.34 219.96 105290000 181400000 771820 174870000 133070000 171580000 119260000 124310000 106560000 120350000 138020000 98030000 169250000 7922400 178810000 127240000 173940000 121300000 128660000 110080000 117710000 132170000 19 19 9 19 19 19 19 19 19 19 19 55812000 92824000 381700 91636000 71520000 121670000 70117000 62358000 54441000 62841000 70284000 51965000 86610000 3637100 94017000 68526000 120760000 70711000 66410000 56632000 61354000 67310000 10 10 5 10 10 10 10 10 10 10 10 49474000 88580000 390120 83236000 61555000 49912000 49145000 61953000 52124000 57512000 67732000 46065000 82635000 4285300 84794000 58710000 53173000 50591000 62249000 53451000 56352000 64855000 9 9 4 9 9 9 9 9 9 9 9 30017000000 16502000000 13515000000 6295 916;2345;442 5865 33651;33652;33653;33654;33655;33656;33657;33658;33659;33660;33661;33662;33663;33664;33665;33666;33667;33668;33669;33670;33671;33672 40250;40251;40252;40253;40254;40255;40256;40257;40258;40259;40260;40261;40262;40263;40264;40265;40266;40267;40268;40269;40270;40271;40272;40273;40274;40275;40276;40277 40273 28 GCAVVEFK Unmodified 908.44259 0.44258826 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS By MS/MS 4.5 1.12 2 2 2 2 4 4 45.793 45.938 2 0.00061522 13046 20211116_3442_TMUAki_TMT10x_S_F4 137.18 103.1 45283000 68951000 665270 69367000 62636000 72806000 50082000 58593000 49603000 54033000 60392000 42165000 64340000 4208600 70788000 59756000 73639000 51442000 60155000 50867000 52960000 57924000 8 8 4 8 8 8 8 8 8 8 8 24346000 37067000 429390 37128000 39275000 49156000 25473000 33087000 27741000 30132000 32625000 22671000 34587000 2515300 38052000 37330000 48974000 26630000 34363000 28295000 29550000 31321000 4 4 2 4 4 4 4 4 4 4 4 20937000 31884000 235880 32240000 23361000 23651000 24609000 25507000 21863000 23902000 27767000 19494000 29753000 1693300 32736000 22426000 24665000 24812000 25792000 22571000 23410000 26603000 4 4 2 4 4 4 4 4 4 4 4 3079300000 1722700000 1356500000 6296 1171 5866 33673;33674;33675;33676;33677;33678;33679;33680 40278;40279;40280;40281;40282;40283;40284;40285;40286;40287 40284 10 GCDVVVIPAGVPR Unmodified 1337.7126 0.71255553 989 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4.92 0.954 1 3 4 4 6 6 53.751 53.892 2;3 1.6288E-19 16391 20211116_3442_TMUAki_TMT10x_S_F4 196.27 159.08 52875000 83327000 323810 101040000 98288000 99143000 63153000 77820000 77784000 69322000 77933000 49231000 77819000 5019200 101800000 93360000 100640000 66349000 79944000 78497000 68054000 75174000 11 11 8 11 11 11 11 11 11 11 11 28655000 43477000 111050 53055000 76823000 79321000 46575000 46847000 48705000 39984000 44451000 26679000 40604000 2851500 53841000 72888000 78457000 48891000 49065000 49305000 39333000 43012000 4 4 1 4 4 4 4 4 4 4 4 24220000 39850000 212760 47989000 21466000 19822000 16578000 30973000 29079000 29338000 33482000 22553000 37214000 2167700 47960000 20473000 22181000 17458000 30879000 29192000 28721000 32162000 7 7 7 7 7 7 7 7 7 7 7 10463000000 5399200000 5063300000 6297 989 5867 33681;33682;33683;33684;33685;33686;33687;33688;33689;33690;33691;33692 40288;40289;40290;40291;40292;40293;40294;40295;40296;40297;40298;40299;40300;40301 40294 14 GCEVVVSGK Unmodified 933.45897 0.45896661 783 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 35.483 35.473 2;3 6.1652E-06 7557 20211116_3444_TMUAki_TMT10x_S_F5 164.96 73.329 9433200 14076000 28456 14415000 9513700 12337000 8703400 5915800 5657600 6427600 9499600 8783200 13136000 772000 14651000 9101000 12552000 8776300 6354200 6025200 6256400 9045000 5 5 2 5 5 5 5 5 5 5 5 7765500 11477000 28456 11880000 7939900 11054000 7010500 4875000 4693800 5317100 7813100 7230500 10711000 654270 12079000 7590300 11173000 7088000 5281600 4987200 5174700 7440400 3 3 2 3 3 3 3 3 3 3 3 1667800 2598700 0 2534700 1573800 1283000 1692900 1040800 963810 1110500 1686500 1552700 2424600 117730 2571600 1510700 1378800 1688300 1072500 1038100 1081700 1604500 2 2 0 2 2 2 2 2 2 2 2 506130000 410980000 95144000 6298 783 5868 33693;33694;33695;33696;33697 40302;40303;40304;40305;40306 40306 5 GCGTVLLSGPR Unmodified 1115.5757 0.5757277 1534 Q07020;Q07020-2 RPL18 60S ribosomal protein L18 yes no 0 0 0 0 By MS/MS By MS/MS 5.4 2.58 2 1 2 3 2 5 5 39.295 39.495 2;3 3.665E-19 11371 20211116_3446_TMUAki_TMT10x_S_F7 234.2 187.12 8582700 14278000 131260 15495000 22746000 22968000 12210000 14317000 13257000 11217000 13869000 7992000 13328000 982020 15833000 21550000 22743000 12968000 14900000 13463000 11082000 13360000 11 11 5 11 11 11 11 11 11 11 11 6511800 10714000 129540 11708000 20877000 21596000 10828000 11257000 10412000 8848500 10657000 6063900 10001000 841920 12022000 19772000 21159000 11496000 11895000 10619000 8741100 10273000 6 6 4 6 6 6 6 6 6 6 6 2070900 3564000 1724.7 3786900 1868700 1372000 1381700 3060300 2845700 2368100 3212300 1928000 3326400 140100 3811400 1777700 1584600 1472300 3005500 2844000 2341300 3087400 5 5 1 5 5 5 5 5 5 5 5 3065000000 2048400000 1016600000 6299 1534 5869 33698;33699;33700;33701;33702;33703;33704;33705;33706;33707 40307;40308;40309;40310;40311;40312;40313;40314;40315;40316;40317;40318 40316 12 GCGVVEFKDEEFVK Unmodified 1641.7709 0.77085827 3065 Q9P2K5;Q9P2K5-2 MYEF2 Myelin expression factor 2 yes no 0 0 0 1 By MS/MS 4 0 1 1 56.521 56.666 3 0.0080213 17103 20211116_3431_TMUAki_TMT10x_P_F4 62.357 50.743 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6300 3065 5870 33708 40319 40319 1 GCGVVEFKDEEFVKK Unmodified 1769.8658 0.86582129 3065 Q9P2K5;Q9P2K5-2 MYEF2 Myelin expression factor 2 yes no 0 0 0 2 By MS/MS By matching 6 0 2 1 1 51.915 52.032 4 4.916E-14 14250 20211116_3434_TMUAki_TMT10x_P_F6 148.03 134.12 3964100 6666300 0 6663200 9329100 12007000 6082900 8727600 7323600 6751600 6680600 3690700 6220400 372300 6877700 8861500 11828000 6378300 8980000 7373400 6675400 6464500 1 1 0 1 1 1 1 1 1 1 1 3964100 6666300 0 6663200 9329100 12007000 6082900 8727600 7323600 6751600 6680600 3690700 6220400 372300 6877700 8861500 11828000 6378300 8980000 7373400 6675400 6464500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 796700000 525900000 270800000 6301 3065 5871 33709;33710 40320 40320 1 GCGVVKFESPEVAER Unmodified 1662.8036 0.80355538 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 1 By MS/MS By MS/MS 4.5 1.12 2 2 2 2 4 4 42.725 42.785 3 2.4442E-19 11732 20211116_3433_TMUAki_TMT10x_P_F5 167.29 139.86 29690000 45443000 162930 53672000 56870000 52399000 33317000 44798000 42318000 35261000 43030000 27645000 42434000 2898600 54154000 53941000 53288000 35305000 45646000 42683000 34830000 41488000 12 12 6 12 12 12 12 12 12 12 12 17670000 26002000 133010 31107000 44149000 42854000 23959000 26588000 24913000 21213000 25332000 16453000 24281000 1907100 31549000 41829000 42567000 25388000 27693000 25318000 20940000 24424000 7 7 3 7 7 7 7 7 7 7 7 12021000 19442000 29915 22565000 12722000 9544800 9357700 18211000 17405000 14047000 17698000 11192000 18153000 991560 22605000 12113000 10721000 9917000 17953000 17365000 13891000 17063000 5 5 3 5 5 5 5 5 5 5 5 5297300000 3441500000 1855800000 6302 1171 5872 33711;33712;33713;33714;33715;33716;33717;33718 40321;40322;40323;40324;40325;40326;40327;40328;40329;40330;40331;40332 40325 12 GCHLLVATPGR Unmodified 1179.6183 0.61826122 104 O00571;O00571-2;O15523;O15523-2 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 0 0 By MS/MS By MS/MS 1 0 4 2 2 33.149 33.154 2;3 3.459E-11 9174 20211116_3439_TMUAki_TMT10x_S_F1 172.23 131.88 1585400 2576500 12619 2894400 2393700 2179500 1686600 1568600 1576400 1640100 2144900 1476300 2405300 154520 2919600 2278100 2250700 1744400 1627800 1628700 1598900 2051600 4 4 4 4 4 4 4 4 4 4 4 665930 1157400 7502.8 1191400 1518300 1418000 817060 679000 689690 759350 933370 620100 1080100 74140 1216500 1438600 1414000 861500 730060 715860 738310 892840 2 2 2 2 2 2 2 2 2 2 2 919480 1419100 5116.4 1702900 875360 761560 869580 889610 886740 880790 1211600 856170 1325200 80382 1703100 839500 836770 882890 897770 912880 860590 1158700 2 2 2 2 2 2 2 2 2 2 2 1122800000 440710000 682070000 6303 104 5873 33719;33720;33721;33722 40333;40334;40335;40336 40336 4 GCILTLVER Unmodified 1059.5747 0.57466507 2588 Q99613;Q99613-2;B5ME19 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 0 0 0 0 By MS/MS By MS/MS 5.86 0.833 3 2 2 3 4 58.051 58.328 2 1.5991E-05 16862 20211116_3434_TMUAki_TMT10x_P_F6 157.91 90.879 31149000 48294000 104720 52073000 38868000 46986000 32447000 33596000 30676000 32094000 38376000 29002000 45078000 2677400 52780000 37106000 47879000 33193000 34789000 31558000 31407000 36782000 4 4 2 4 4 4 4 4 4 4 4 18542000 27238000 13802 29599000 26433000 36040000 21135000 18467000 17506000 18255000 21725000 17264000 25425000 1590100 30126000 25208000 35923000 21603000 19656000 18118000 17838000 20827000 2 2 1 2 2 2 2 2 2 2 2 12607000 21056000 90915 22474000 12435000 10945000 11312000 15129000 13170000 13839000 16651000 11739000 19653000 1087300 22654000 11898000 11956000 11590000 15133000 13440000 13569000 15955000 2 2 1 2 2 2 2 2 2 2 2 2518300000 1754700000 763630000 6304 2588 5874 33723;33724;33725;33726;33727;33728;33729 40337;40338;40339;40340;40341;40342;40343;40344 40338 8 GCITIIGGGDTATCCAK Unmodified 1753.7797 0.77972517 473 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.73 0.998 2 4 5 4 8 7 50.758 51.005 2;3;4 1.3448E-80 14194 20211116_3445_TMUAki_TMT10x_S_F6 326.01 293.41 63231000 94727000 579840 117010000 103800000 97812000 66998000 75770000 68718000 67749000 80497000 58874000 88474000 5814500 117510000 98599000 100330000 69936000 77910000 70252000 66498000 77288000 16 16 9 16 16 16 16 16 16 16 16 34792000 50133000 421200 61950000 79527000 76936000 43426000 42517000 38935000 38110000 44857000 32396000 46824000 3728300 62589000 75361000 76680000 45798000 44834000 40016000 37401000 43088000 9 9 5 9 9 9 9 9 9 9 9 28439000 44594000 158640 55058000 24268000 20875000 23572000 33253000 29783000 29640000 35641000 26478000 41650000 2086200 54918000 23238000 23653000 24139000 33076000 30235000 29096000 34200000 7 7 4 7 7 7 7 7 7 7 7 19234000000 11362000000 7871700000 6305 473 5875 33730;33731;33732;33733;33734;33735;33736;33737;33738;33739;33740;33741;33742;33743;33744 40345;40346;40347;40348;40349;40350;40351;40352;40353;40354;40355;40356;40357;40358;40359;40360;40361 40358 17 GCLELIK Unmodified 831.45242 0.45242467 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS 6 0 1 1 51.891 52.023 2 0.022564 14658 20211116_3445_TMUAki_TMT10x_S_F6 85.265 32.582 4125700 6923800 0 7472300 4050900 3982000 3996100 6435800 6291000 5538100 6506600 3841200 6462700 305480 7532000 3880500 4327000 4127300 6392800 6307300 5445800 6270000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4125700 6923800 0 7472300 4050900 3982000 3996100 6435800 6291000 5538100 6506600 3841200 6462700 305480 7532000 3880500 4327000 4127300 6392800 6307300 5445800 6270000 1 1 0 1 1 1 1 1 1 1 1 100350000 0 100350000 6306 629 5876 33745 40362 40362 1 GCLELIKETGVPIAGR Unmodified 1711.9291 0.92909025 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 1 By MS/MS 7.33 0.471 2 1 3 77.706 77.722 3 1.0043E-09 17820 20211116_3447_TMUAki_TMT10x_S_F8 109.42 85.94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6307 629 5877 33746;33747;33748 40363;40364;40365 40365 3 GCLLYGPPGTGK Unmodified 1218.6067 0.60669348 1357 P62333 PSMC6 26S protease regulatory subunit 10B yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 4 2 3 3 51.488 51.394 2;3 4.2471E-17 14574 20211116_3428_TMUAki_TMT10x_P_F1 215.93 164.2 11907000 18841000 61177 23070000 20988000 21338000 13677000 16545000 17361000 14261000 16858000 11087000 17597000 1104200 23210000 19940000 21737000 14369000 16995000 17483000 14022000 16278000 6 6 4 6 6 6 6 6 6 6 6 6399600 9820300 57163 12122000 16597000 17241000 9582300 9034500 9568500 7528100 9000400 5959100 9172000 726670 12281000 15741000 17064000 10086000 9554700 9714700 7414400 8699900 3 3 3 3 3 3 3 3 3 3 3 5507400 9021100 4013.7 10948000 4390800 4097500 4094500 7510200 7792500 6732700 7858100 5127500 8424800 377490 10930000 4198600 4673500 4283200 7440400 7768000 6607600 7578400 3 3 1 3 3 3 3 3 3 3 3 1156300000 678500000 477770000 6308 1357 5878 33749;33750;33751;33752;33753;33754 40366;40367;40368;40369;40370;40371 40366 6 GCLTEQTYPEVVR Unmodified 1550.7399 0.73989249 1848 Q16537;Q16537-2;Q16537-3 PPP2R5E Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform yes no 0 0 0 0 By MS/MS 4 0 1 1 45.35 45.552 2 1.9044E-42 12969 20211116_3442_TMUAki_TMT10x_S_F4 261.22 214.83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6309 1848 5879 33755 40372 40372 1 GCPEDAAVCAVDK Unmodified 1390.5857 0.58570004 630 P11717 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 0 0 0 0 By MS/MS 3 0 2 2 42.293 42.348 3 0.018828 12816 20211116_3430_TMUAki_TMT10x_P_F3 55.196 42.429 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6310 630 5880 33756;33757 40373;40374 40373 2 GCTALHYAVLADDYR Unmodified 1723.7988 0.79880436 2766 Q9H078;Q9H078-3;Q9H078-2;Q9H078-5;Q9H078-4 CLPB Caseinolytic peptidase B protein homolog yes no 0 0 0 0 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 49.325 49.492 3 6.3923E-07 13348 20211116_3444_TMUAki_TMT10x_S_F5 113.59 98.9 16349000 28428000 181470 29967000 20729000 18247000 14832000 23867000 21864000 19595000 23462000 15223000 26532000 1550000 30287000 19736000 19438000 15570000 23855000 21992000 19314000 22584000 7 7 6 7 7 7 7 7 7 7 7 2899200 3978000 25817 4594200 5857200 5820600 3782200 3045700 3323300 2831800 3383500 2699700 3714200 305850 4661700 5565500 5791600 3930700 3230300 3403100 2774500 3262000 1 1 1 1 1 1 1 1 1 1 1 13449000 24450000 155660 25372000 14872000 12426000 11049000 20821000 18541000 16764000 20079000 12524000 22817000 1244200 25625000 14171000 13646000 11640000 20624000 18589000 16539000 19322000 6 6 5 6 6 6 6 6 6 6 6 1265700000 422250000 843460000 6311 2766 5881 33758;33759;33760;33761;33762 40375;40376;40377;40378;40379;40380;40381;40382 40380 8 GCTATLGNFAK Unmodified 1138.5441 0.54409322 687 P15880 RPS2 40S ribosomal protein S2 yes yes 0 0 0 0 By MS/MS By MS/MS 7.43 0.495 4 3 4 3 46.246 46.572 2;3 8.5163E-73 12676 20211116_3436_TMUAki_TMT10x_P_F8 346.85 299.5 17070000 25520000 196990 33512000 59097000 34468000 19292000 23675000 28184000 17061000 29128000 15894000 23843000 2085000 33638000 55670000 34812000 21925000 24418000 28317000 16935000 28070000 8 8 5 8 8 8 8 8 8 8 8 10866000 15686000 173330 19972000 53786000 29873000 14452000 14789000 17876000 10637000 18283000 10118000 14653000 1580200 20220000 50589000 29483000 16822000 15674000 18051000 10560000 17624000 5 5 4 5 5 5 5 5 5 5 5 6203600 9834100 23656 13541000 5311500 4594600 4839700 8885700 10308000 6423700 10845000 5776200 9190100 504870 13418000 5081200 5328900 5103000 8744200 10266000 6375100 10445000 3 3 1 3 3 3 3 3 3 3 3 1867800000 1480400000 387380000 6312 687 5882 33763;33764;33765;33766;33767;33768;33769 40383;40384;40385;40386;40387;40388;40389;40390 40387 8 GCVITISGR Unmodified 961.5015 0.50150012 64 O00154-4;O00154;O00154-6;O00154-7;O00154-5 ACOT7 Cytosolic acyl coenzyme A thioester hydrolase yes no 0 0 0 0 By MS/MS By MS/MS 7 0.894 2 1 2 3 2 37.066 37.478 2 6.3742E-06 10271 20211116_3435_TMUAki_TMT10x_P_F7 174.52 79.167 1708700 2493600 24487 2895100 2376200 2197900 1720800 1968000 1899500 1822300 2177900 1591100 2328300 169310 2914700 2263100 2276900 1785300 2008200 1934500 1785800 2092400 4 4 2 4 4 4 4 4 4 4 4 1004900 1404600 2276.4 1670700 1525700 1510500 911320 932170 848540 855860 1149500 935670 1311600 89436 1683200 1447400 1535700 954570 974660 876670 839020 1099600 2 2 1 2 2 2 2 2 2 2 2 703730 1089000 22210 1224400 850500 687390 809460 1035900 1051000 966440 1028400 655400 1016700 79870 1231500 815730 741220 830700 1033500 1057800 946740 992750 2 2 1 2 2 2 2 2 2 2 2 190990000 133620000 57371000 6313 64 5883 33770;33771;33772;33773;33774 40391;40392;40393;40394;40395;40396 40392 6 GDAAVRDELMAAVR Oxidation (M) 1488.7355 0.73547582 1750 Q15008;Q15008-4 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 0 0 1 1 By MS/MS By MS/MS 3 0.894 2 1 2 2 3 43.908 43.849 3 0.00018889 12243 20211116_3442_TMUAki_TMT10x_S_F4 85.487 68.162 9208700 15519000 87931 17705000 14706000 16317000 10529000 16360000 17437000 13932000 14968000 8574600 14489000 760230 17887000 13999000 16710000 11112000 16559000 17350000 13707000 14515000 7 7 4 7 7 7 7 7 7 7 7 4414800 7506100 57945 8439900 10533000 12160000 6752500 7643300 8065300 6351500 6988700 4110800 7007500 481220 8599800 10007000 12057000 7087700 7960400 8109400 6256400 6775100 3 3 2 3 3 3 3 3 3 3 3 4793900 8013300 29987 9265200 4172400 4157300 3776700 8716800 9372100 7581000 7978900 4463700 7481900 279010 9287300 3992200 4652700 4024800 8598600 9240200 7450800 7740000 4 4 2 4 4 4 4 4 4 4 4 1571300000 802790000 768500000 6314 1750 5884 33775;33776;33777;33778;33779 40397;40398;40399;40400;40401;40402;40403 40403 2357 7 GDAAVRDELMAAVR Unmodified 1472.7406 0.7405612 1750 Q15008;Q15008-4 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 51.91 51.771 3 4.2203E-14 15077 20211116_3431_TMUAki_TMT10x_P_F4 136.57 79.547 7604300 12060000 0 14408000 8343300 8315300 7551200 7806000 7692900 7489400 9982200 7079800 11262000 576000 14442000 7975800 8835400 7705400 7952800 7901200 7327500 9558600 3 3 0 3 3 3 3 3 3 3 3 2119700 3113000 0 3717200 3607700 4070200 2796200 1781200 1851400 1874700 2352500 1973400 2907000 167730 3754700 3437000 4073200 2849500 1929300 1942600 1827100 2253900 1 1 0 1 1 1 1 1 1 1 1 5484600 8946700 0 10691000 4735600 4245100 4755000 6024800 5841500 5614600 7629600 5106400 8354700 408270 10687000 4538900 4762200 4855800 6023500 5958600 5500400 7304700 2 2 0 2 2 2 2 2 2 2 2 840830000 236590000 604230000 6315 1750 5884 33780;33781;33782;33783 40404;40405;40406;40407 40405 4 GDADQASNILASFGLSAR Unmodified 1791.8751 0.87514042 1026 P43243 MATR3 Matrin-3 yes yes 0 0 0 0 By MS/MS By MS/MS 7.24 0.862 1 4 8 12 19 6 67.337 67.37 2;3 2.5886E-171 27613 20211116_3446_TMUAki_TMT10x_S_F7 430.48 400.13 91451000 155270000 321280 135180000 96900000 153280000 116900000 88208000 90544000 101910000 113420000 85147000 144810000 6406500 139590000 93395000 153580000 116710000 93378000 94078000 98962000 108700000 29 29 17 29 29 29 29 29 29 29 29 57547000 96411000 291000 86068000 56377000 106820000 68338000 50789000 54163000 61176000 69505000 53582000 89923000 4292800 88844000 54357000 106280000 68254000 54777000 56267000 59320000 66574000 23 23 14 23 23 23 23 23 23 23 23 33904000 58861000 30276 49109000 40523000 46467000 48558000 37419000 36381000 40730000 43911000 31565000 54887000 2113600 50749000 39038000 47297000 48457000 38600000 37811000 39643000 42126000 6 6 3 6 6 6 6 6 6 6 6 27681000000 13419000000 14262000000 6316 1026 5885 33784;33785;33786;33787;33788;33789;33790;33791;33792;33793;33794;33795;33796;33797;33798;33799;33800;33801;33802;33803;33804;33805;33806;33807;33808 40408;40409;40410;40411;40412;40413;40414;40415;40416;40417;40418;40419;40420;40421;40422;40423;40424;40425;40426;40427;40428;40429;40430;40431;40432;40433;40434;40435;40436;40437;40438;40439;40440 40437 33 GDAEKPEEELEEDDDEELDETLSER Unmodified 2920.2105 0.21052504 2940 Q9NS69 TOMM22 Mitochondrial import receptor subunit TOM22 homolog yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 4 2 2 59.973 59.826 3;4 4.6263E-60 18016 20211116_3428_TMUAki_TMT10x_P_F1 218.93 215.78 21949000 38524000 90327 38047000 26929000 39020000 26700000 25334000 25524000 25301000 28160000 20435000 35945000 1582400 38862000 25806000 39384000 27059000 26448000 26111000 24712000 27083000 8 8 2 8 8 8 8 8 8 8 8 17572000 29608000 0 29888000 21488000 34213000 22706000 18976000 19294000 19506000 21658000 16360000 27629000 1163100 30536000 20622000 34245000 22862000 20078000 19861000 19028000 20819000 5 5 0 5 5 5 5 5 5 5 5 4376100 8915500 90327 8158700 5441500 4806900 3994000 6358400 6230400 5795300 6502000 4075000 8316300 419270 8326500 5183900 5138500 4196200 6369600 6250100 5683200 6263800 3 3 2 3 3 3 3 3 3 3 3 6858200000 3800600000 3057600000 6317 2940 5886 33809;33810;33811;33812 40441;40442;40443;40444;40445;40446;40447;40448 40441 8 GDAMIMEETGK 2 Oxidation (M) 1212.5002 0.50023907 3217 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 yes yes 0 0 2 0 By MS/MS 3 0 1 1 34.442 34.421 3 0.017037 9717 20211116_3430_TMUAki_TMT10x_P_F3 57.019 40.795 58881 82802 951.13 116580 160120 94005 81041 55355 59313 49254 76192 54831 77389 7186 116210 151600 96290 85665 58049 61890 48355 72977 1 1 1 1 1 1 1 1 1 1 1 58881 82802 951.13 116580 160120 94005 81041 55355 59313 49254 76192 54831 77389 7186 116210 151600 96290 85665 58049 61890 48355 72977 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 951080 951080 0 6318 3217 5887 33813 40449 40449 3201;3202 1 GDATVSYEDPPTAK Unmodified 1449.6624 0.66235368 1489 Q01844;Q01844-6;Q01844-3;Q01844-5;Q01844-2 EWSR1 RNA-binding protein EWS yes no 0 0 0 0 By MS/MS 3 0 1 1 41.005 40.703 3 8.8428E-07 13326 20211116_3441_TMUAki_TMT10x_S_F3 97.551 81.661 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6319 1489 5888 33814 40450 40450 1 GDAVRDVDIIDHHDNTYTVK Unmodified 2282.0927 0.092737771 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 44.094 44.097 5 7.4751E-13 12399 20211116_3442_TMUAki_TMT10x_S_F4 131.71 120.95 12431000 20311000 20500 22714000 16163000 14991000 13060000 20345000 19595000 15862000 18915000 11574000 18961000 1015000 22887000 15415000 15869000 13612000 20281000 19625000 15677000 18268000 6 6 1 6 6 6 6 6 6 6 6 2185600 3331500 0 4411600 5869500 6064000 3584300 3295400 3645300 2871400 3452000 2034900 3112700 223640 4449000 5569900 6013500 3757000 3477600 3699000 2821800 3336000 2 2 0 2 2 2 2 2 2 2 2 10246000 16980000 20500 18302000 10293000 8927200 9475400 17050000 15950000 12991000 15463000 9539300 15849000 791390 18438000 9845400 9855200 9854500 16803000 15926000 12855000 14932000 4 4 1 4 4 4 4 4 4 4 4 2023700000 1313700000 710010000 6320 755 5889 33815;33816;33817;33818 40451;40452;40453;40454;40455;40456 40455 6 GDEELDSLIK Unmodified 1117.5503 0.55028404 591 Q71UI9;P0C0S5;Q71UI9-3;Q71UI9-4;Q71UI9-2 H2AFV;H2AFZ Histone H2A.V;Histone H2A.Z yes no 0 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 60.659 60.418 2 8.4966E-09 18286 20211116_3428_TMUAki_TMT10x_P_F1 176.38 109.7 30843000 44296000 77143 62703000 88803000 82876000 45048000 49851000 55585000 44023000 49898000 28716000 41402000 3148200 62969000 84034000 82442000 48308000 52177000 55885000 43235000 48311000 7 7 3 7 7 7 7 7 7 7 7 25693000 36147000 77143 51860000 85104000 78559000 41038000 41400000 46751000 36683000 41264000 23921000 33787000 2790300 52195000 80483000 77549000 44108000 43827000 47116000 36021000 39976000 6 6 3 6 6 6 6 6 6 6 6 5150200 8149600 0 10843000 3698200 4316500 4009900 8451300 8834600 7339900 8634600 4794900 7614500 357840 10774000 3550600 4892900 4200500 8350800 8769400 7214400 8335600 1 1 0 1 1 1 1 1 1 1 1 2658000000 2185300000 472760000 6321 591 5890 33819;33820;33821;33822;33823;33824 40457;40458;40459;40460;40461;40462;40463;40464;40465 40457 9 GDFCIQVGR Unmodified 1050.4917 0.49166372 770;684 P15531;P15531-2;P22392-2;P22392;O60361 NME1;NME2;NME2P1 Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase no no 0 0 0 0 By MS/MS By MS/MS 4.59 2.25 2 2 2 2 2 3 2 2 8 9 46.459 46.525 2 6.0792E-06 12349 20211116_3445_TMUAki_TMT10x_S_F6 161.02 127.47 336550000 521870000 570280 518530000 436570000 539470000 329020000 454750000 402410000 358350000 430750000 313290000 486950000 21054000 529530000 415370000 546380000 341630000 463750000 407180000 353960000 414660000 25 25 7 25 25 25 25 25 25 25 25 193230000 288480000 340390 283900000 283150000 391990000 191150000 223520000 198020000 183600000 230330000 179870000 269170000 11386000 291570000 268800000 388880000 198910000 234570000 202290000 180960000 221190000 12 12 4 12 12 12 12 12 12 12 12 143310000 233390000 229880 234630000 153420000 147480000 137870000 231230000 204400000 174750000 200430000 133420000 217780000 9668100 237970000 146560000 157500000 142720000 229180000 204890000 173000000 193470000 13 13 3 13 13 13 13 13 13 13 13 62024000000 33271000000 28754000000 6322 684;770 5891 33825;33826;33827;33828;33829;33830;33831;33832;33833;33834;33835;33836;33837;33838;33839;33840;33841 40466;40467;40468;40469;40470;40471;40472;40473;40474;40475;40476;40477;40478;40479;40480;40481;40482;40483;40484;40485;40486;40487;40488;40489;40490;40491 40487 26 GDFDENLNYPEQK Unmodified 1567.6791 0.67906638 3083 Q9UBQ0;Q9UBQ0-2 VPS29 Vacuolar protein sorting-associated protein 29 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 51.641 51.394 3 5.9471E-06 16180 20211116_3429_TMUAki_TMT10x_P_F2 96.734 83.753 4164300 6718600 114250 9081800 8019800 7838000 5241300 6731500 7544300 6028100 7179900 3878200 6278000 505720 9079400 7626800 8036700 5533100 6878900 7561300 5916400 6937500 2 2 2 2 2 2 2 2 2 2 2 2257400 3409400 50559 4712100 6297900 6355000 3793300 3593400 4202500 3391300 4052400 2102300 3186200 290870 4739600 5978900 6310700 3991400 3786900 4252100 3320500 3913800 1 1 1 1 1 1 1 1 1 1 1 1906800 3309200 63691 4369800 1721800 1483000 1448000 3138100 3341800 2636800 3127500 1775900 3091800 214860 4339800 1647900 1726000 1541700 3092100 3309200 2595900 3023700 1 1 1 1 1 1 1 1 1 1 1 315760000 241270000 74487000 6323 3083 5892 33842;33843;33844 40492;40493;40494 40492 3 GDFFPPERPQQLPHGLGGIGMGLGPGGQPIDANHLNK Oxidation (M) 3833.906 0.9060104 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 1 1 By MS/MS By MS/MS 5.91 3.03 3 2 6 4 7 62.129 62.224 4;5;6;7 1.1701E-39 18491 20211116_3447_TMUAki_TMT10x_S_F8 172.06 165.4 157530000 272200000 1761500 240520000 186460000 266970000 185250000 213050000 212950000 216940000 223620000 146680000 253880000 11552000 248000000 178770000 269130000 188820000 219450000 215810000 211720000 215390000 32 32 17 32 32 32 32 32 32 32 32 64816000 111070000 989060 95973000 69240000 145540000 76692000 84767000 85496000 87053000 90065000 60356000 103590000 4475200 99716000 66625000 143850000 77675000 89321000 86754000 84926000 86741000 13 13 8 13 13 13 13 13 13 13 13 92715000 161130000 772430 144550000 117220000 121430000 108560000 128280000 127450000 129890000 133560000 86323000 150290000 7076700 148290000 112150000 125280000 111150000 130130000 129050000 126790000 128650000 19 19 9 19 19 19 19 19 19 19 19 49176000000 22731000000 26445000000 6324 1171 5893 33845;33846;33847;33848;33849;33850;33851;33852;33853;33854;33855 40495;40496;40497;40498;40499;40500;40501;40502;40503;40504;40505;40506;40507;40508;40509;40510;40511;40512;40513;40514;40515;40516;40517;40518;40519;40520;40521;40522;40523;40524;40525;40526 40523 1562 32 GDFFPPERPQQLPHGLGGIGMGLGPGGQPIDANHLNK Unmodified 3817.9111 0.91109578 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 1 By MS/MS By MS/MS 4 3.46 4 3 4 3 66.041 66.009 5;6 1.4148E-31 22561 20211116_3439_TMUAki_TMT10x_S_F1 152.93 142.12 91351000 142200000 498150 146170000 99129000 101190000 104860000 54696000 46523000 57093000 95527000 85053000 132700000 6092900 148170000 95166000 104820000 104260000 58029000 51621000 55662000 90635000 20 20 9 20 20 20 20 20 20 20 20 51660000 77560000 314850 79061000 48816000 71214000 59521000 30703000 26251000 31645000 52887000 48100000 72378000 3093000 80432000 47077000 72121000 58785000 33290000 29107000 30867000 50193000 12 12 5 12 12 12 12 12 12 12 12 39691000 64636000 183300 67111000 50313000 29979000 45339000 23993000 20272000 25449000 42640000 36953000 60321000 2999900 67734000 48089000 32697000 45473000 24740000 22514000 24794000 40441000 8 8 4 8 8 8 8 8 8 8 8 13253000000 8086200000 5167000000 6325 1171 5893 33856;33857;33858;33859;33860;33861;33862 40527;40528;40529;40530;40531;40532;40533;40534;40535;40536;40537;40538;40539;40540;40541;40542;40543;40544;40545;40546 40540 20 GDFIALDLGGSSFR Unmodified 1453.7201 0.72014333 730 P19367;P19367-4;P19367-2;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 By MS/MS 4 0 2 2 76.023 76.05 2 0.058236 25084 20211116_3431_TMUAki_TMT10x_P_F4 49.448 28.748 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6326 730 5894 33863;33864 40547;40548 40548 2 GDFYTAHGEDALLAAR Unmodified 1705.806 0.80599822 1027 P43246 MSH2 DNA mismatch repair protein Msh2 yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 50.311 50.376 3 9.0338E-11 14995 20211116_3442_TMUAki_TMT10x_S_F4 130.21 113.27 16687000 24624000 56560 28998000 23632000 21102000 17332000 10468000 10006000 10209000 18196000 15537000 22993000 1452600 29156000 22499000 21745000 17683000 11172000 10791000 9981000 17300000 3 3 2 3 3 3 3 3 3 3 3 11637000 16433000 39850 19533000 19190000 17489000 12642000 7195100 6645300 6832100 12160000 10835000 15345000 1026900 19678000 18232000 17711000 12980000 7824100 7218600 6687500 11560000 2 2 1 2 2 2 2 2 2 2 2 5049800 8191400 16710 9465100 4442700 3613200 4690200 3272500 3360800 3376600 6036200 4702000 7648200 425730 9478500 4267100 4034200 4703400 3347600 3572100 3293500 5740100 1 1 1 1 1 1 1 1 1 1 1 1167600000 698490000 469090000 6327 1027 5895 33865;33866;33867 40549;40550;40551 40551 3 GDGPICLVLAPTR Unmodified 1367.7231 0.72312022 710;2368 P17844;P17844-2;Q92841;Q92841-3;Q92841-1;Q92841-2 DDX5;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 no no 0 0 0 0 By MS/MS By MS/MS 6 0.816 3 3 3 4 5 63.106 63.329 2;3 6.1193E-15 20705 20211116_3435_TMUAki_TMT10x_P_F7 176.42 145 62338000 106470000 808060 108070000 71826000 94852000 67134000 76551000 70342000 75190000 83656000 58048000 99350000 5972500 109940000 68796000 97033000 68441000 78714000 71893000 73491000 80288000 10 10 7 10 10 10 10 10 10 10 10 26486000 43180000 447500 44324000 37093000 57648000 33945000 31687000 28885000 31267000 33691000 24665000 40296000 2761500 45336000 35514000 57323000 34440000 33515000 29778000 30554000 32351000 4 4 4 4 4 4 4 4 4 4 4 35851000 63286000 360560 63750000 34734000 37204000 33188000 44864000 41457000 43923000 49965000 33383000 59054000 3211000 64606000 33282000 39710000 34001000 45199000 42116000 42937000 47936000 6 6 3 6 6 6 6 6 6 6 6 12035000000 6425400000 5609500000 6328 710;2368 5896 33868;33869;33870;33871;33872;33873;33874;33875;33876 40552;40553;40554;40555;40556;40557;40558;40559;40560;40561;40562;40563;40564 40556 13 GDGPVQGIINFEQK Unmodified 1500.7573 0.75725712 468 P00441 SOD1 Superoxide dismutase [Cu-Zn] yes yes 0 0 0 0 By MS/MS By MS/MS 4.44 1.22 1 3 4 4 4 9 7 64.481 64.443 2;3 2.9319E-60 19780 20211116_3445_TMUAki_TMT10x_S_F6 299.69 263.31 144510000 239410000 1201500 293380000 190250000 169020000 143220000 103660000 100130000 114550000 170630000 134550000 223600000 12981000 293630000 181260000 178390000 146400000 109020000 106250000 111420000 162420000 22 22 15 22 22 22 22 22 22 22 22 70137000 112750000 478000 139070000 91489000 116020000 78749000 46167000 45716000 52840000 78959000 65304000 105310000 6091200 139670000 87402000 118040000 79522000 50664000 49133000 51332000 75140000 10 10 8 10 10 10 10 10 10 10 10 74370000 126660000 723530 154320000 98758000 53004000 64471000 57492000 54416000 61707000 91669000 69249000 118290000 6889800 153960000 93856000 60347000 66877000 58354000 57121000 60093000 87276000 12 12 7 12 12 12 12 12 12 12 12 20597000000 11114000000 9483600000 6329 468 5897 33877;33878;33879;33880;33881;33882;33883;33884;33885;33886;33887;33888;33889;33890;33891;33892 40565;40566;40567;40568;40569;40570;40571;40572;40573;40574;40575;40576;40577;40578;40579;40580;40581;40582;40583;40584;40585;40586;40587;40588 40587 24 GDGVVLVAPPLR Unmodified 1191.6976 0.69755739 1351 P62310 LSM3 U6 snRNA-associated Sm-like protein LSm3 yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 56.683 56.798 2 3.7763E-15 16597 20211116_3445_TMUAki_TMT10x_S_F6 190.02 162.76 18555000 29440000 26031 30286000 26796000 36324000 23302000 23574000 21617000 21937000 24901000 17276000 27474000 1581400 30927000 25601000 36345000 23767000 24563000 22182000 21492000 23920000 4 4 3 4 4 4 4 4 4 4 4 12917000 20575000 12503 20609000 22028000 31142000 18372000 17270000 15226000 15574000 17374000 12027000 19199000 1113600 21180000 21024000 30764000 18730000 18209000 15704000 15281000 16694000 3 3 2 3 3 3 3 3 3 3 3 5637600 8865100 13528 9677400 4768600 5182100 4930000 6303300 6391100 6362100 7526900 5249200 8275100 467830 9748000 4577200 5581700 5037500 6354000 6478200 6211200 7225800 1 1 1 1 1 1 1 1 1 1 1 2081100000 1022400000 1058700000 6330 1351 5898 33893;33894;33895 40589;40590;40591;40592 40592 4 GDGVVLVAPPLRVG Unmodified 1347.7874 0.78743503 1351 P62310 LSM3 U6 snRNA-associated Sm-like protein LSm3 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 64.302 64.839 2 2.3571E-12 21370 20211116_3435_TMUAki_TMT10x_P_F7 156.48 119.46 6525100 10998000 0 11114000 9002400 10234000 7021200 8367200 7815200 7590100 8692600 6075100 10262000 518880 11317000 8578500 10438000 7250100 8578200 7947000 7444900 8358300 2 2 0 2 2 2 2 2 2 2 2 3294300 5569600 0 5910800 4448900 7161600 4069500 4192400 4304400 3957800 4580600 3067300 5198300 284170 6024600 4255900 7151900 4155000 4405400 4378500 3875100 4410200 1 1 0 1 1 1 1 1 1 1 1 3230800 5428100 0 5203400 4553600 3072800 2951700 4174800 3510800 3632300 4112000 3007800 5064100 234700 5292400 4322600 3286600 3095100 4172800 3568500 3569800 3948100 1 1 0 1 1 1 1 1 1 1 1 899720000 482480000 417240000 6331 1351 5899 33896;33897 40593;40594 40593 2 GDHAGVLK Unmodified 795.4239 0.42390173 1859 Q16658 FSCN1 Fascin yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.707 1 2 1 3 1 29.563 29.549 2;3 0.0038325 6192 20211116_3431_TMUAki_TMT10x_P_F4 96.253 51.806 1266900 1885500 4472 2114900 1375600 1501200 1135200 617610 3185300 898800 1104900 1179500 1760200 100200 2132200 1312600 1547300 1227500 680960 3077000 866230 1130300 2 2 1 2 2 2 2 2 2 2 2 1266900 1885500 4472 2114900 1375600 1501200 1135200 617610 3185300 898800 1104900 1179500 1760200 100200 2132200 1312600 1547300 1227500 680960 3077000 866230 1130300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36988000 36988000 0 6332 1859 5900 33898;33899;33900;33901 40595;40596;40597;40598 40596 4 GDIFLVR Unmodified 818.46504 0.46503826 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 By MS/MS By MS/MS 5.43 1.18 2 2 1 2 4 3 53.605 53.743 2 0.0060531 16139 20211116_3433_TMUAki_TMT10x_P_F5 105.39 21.776 15156000 23453000 0 22386000 28523000 29020000 13869000 17104000 16730000 17162000 20182000 14111000 21880000 1252300 22668000 26968000 28887000 14517000 17532000 17018000 16759000 19362000 5 5 0 4 5 5 4 4 5 5 5 9982700 15261000 0 13110000 23224000 24663000 9710700 10007000 9711100 11196000 12836000 9293500 14232000 841600 13355000 21917000 24083000 10151000 10488000 9990200 10885000 12285000 3 3 0 2 3 3 2 2 3 3 3 5173700 8191900 0 9276400 5298900 4357000 4158600 7096700 7019300 5966500 7346000 4817100 7648000 410720 9313300 5050900 4803600 4366400 7043400 7027400 5873800 7076300 2 2 0 2 2 2 2 2 2 2 2 2980700000 2116700000 863970000 6333 1235 5901 33902;33903;33904;33905;33906;33907;33908 40599;40600;40601;40602;40603;40604;40605 40600 7 GDINILLIGDPSVAK Unmodified 1523.8559 0.85590853 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 0 By MS/MS By MS/MS 6 0.775 3 4 3 5 5 77.742 77.755 2;3 1.2673E-09 24833 20211116_3434_TMUAki_TMT10x_P_F6 135.02 122.79 30649000 50697000 451520 48099000 33526000 41128000 36798000 25940000 23868000 28795000 35374000 28540000 47296000 2891300 49148000 32249000 41987000 36754000 27226000 25256000 28005000 33768000 7 7 5 7 7 7 7 7 7 7 7 13290000 21951000 309240 20663000 13013000 23242000 15538000 11886000 10117000 12210000 15335000 12376000 20477000 1359500 21209000 12558000 23264000 15461000 12668000 10715000 11911000 14631000 3 3 2 3 3 3 3 3 3 3 3 17359000 28746000 142280 27436000 20514000 17885000 21260000 14053000 13752000 16586000 20040000 16164000 26819000 1531700 27939000 19692000 18723000 21293000 14558000 14542000 16094000 19137000 4 4 3 4 4 4 4 4 4 4 4 6544700000 2541000000 4003700000 6334 799 5902 33909;33910;33911;33912;33913;33914;33915;33916;33917;33918 40606;40607;40608;40609;40610;40611;40612;40613;40614 40609 9 GDINVLLCGDPGTAK Unmodified 1528.7555 0.75554256 1114 P49736 MCM2 DNA replication licensing factor MCM2 yes yes 0 0 0 0 By MS/MS 6 0 1 1 63.131 63.11 3 0.0037505 19258 20211116_3445_TMUAki_TMT10x_S_F6 60.246 47.479 2748900 4964500 115630 4602700 2930000 2838600 2970800 3570900 3179000 3256600 3898400 2560400 4631100 338200 4694700 2817400 3017000 3017700 3584200 3250500 3193500 3738400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2748900 4964500 115630 4602700 2930000 2838600 2970800 3570900 3179000 3256600 3898400 2560400 4631100 338200 4694700 2817400 3017000 3017700 3584200 3250500 3193500 3738400 1 1 1 1 1 1 1 1 1 1 1 609230000 0 609230000 6335 1114 5903 33919 40615 40615 1 GDKVDILYNNIK Unmodified 1390.7456 0.7456298 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 0 1 By MS/MS 7 0 1 1 56.749 57.482 3 2.4908E-05 18325 20211116_3435_TMUAki_TMT10x_P_F7 94.551 62.028 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6336 3317 5904 33920 40616 40616 1 GDLGIEIPAEK Unmodified 1140.6027 0.60265396 670;671 P14618;P14618-3;P30613;P30613-2;P14618-2 PKM;PKLR Pyruvate kinase PKM;Pyruvate kinase PKLR no no 0 0 0 0 By MS/MS By MS/MS 3.32 1.49 3 3 4 4 4 1 11 8 59.34 59.205 2;3 1.6553E-14 19785 20211116_3430_TMUAki_TMT10x_P_F3 190.86 106.91 102890000 153260000 937520 209440000 194570000 172320000 110820000 147220000 163780000 118690000 154400000 95797000 143220000 9775900 209140000 184450000 177280000 118430000 150100000 163970000 117090000 149240000 16 16 6 16 16 16 16 16 16 16 16 53280000 77349000 126750 106880000 158950000 138220000 77967000 76369000 84291000 60290000 76377000 49606000 72285000 5510400 107420000 150350000 137490000 83515000 80287000 85194000 59545000 73923000 8 8 3 8 8 8 8 8 8 8 8 49606000 75914000 810760 102570000 35612000 34102000 32855000 70855000 79489000 58397000 78026000 46191000 70935000 4265500 101730000 34100000 39790000 34914000 69813000 78774000 57547000 75314000 8 8 3 8 8 8 8 8 8 8 8 27179000000 16357000000 10822000000 6337 670;671 5905 33921;33922;33923;33924;33925;33926;33927;33928;33929;33930;33931;33932;33933;33934;33935;33936;33937;33938;33939 40617;40618;40619;40620;40621;40622;40623;40624;40625;40626;40627;40628;40629;40630;40631;40632;40633;40634;40635;40636 40621 20 GDLLFLTNRVEDPIR Unmodified 1756.9472 0.94718315 1411 P67812;P67812-4;P67812-3;P67812-2 SEC11A Signal peptidase complex catalytic subunit SEC11A yes no 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 67.658 67.592 3 1.7387E-10 20655 20211116_3434_TMUAki_TMT10x_P_F6 123.24 101.15 3945600 7336900 41973 7046300 5181500 4886900 5279800 4393000 3924200 4632400 5368500 3674100 6845000 383540 7176600 4973300 5100600 5308500 4498600 4102800 4514400 5134100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3945600 7336900 41973 7046300 5181500 4886900 5279800 4393000 3924200 4632400 5368500 3674100 6845000 383540 7176600 4973300 5100600 5308500 4498600 4102800 4514400 5134100 1 1 1 1 1 1 1 1 1 1 1 594640000 0 594640000 6338 1411 5906 33940;33941;33942;33943 40637;40638;40639;40640 40638 4 GDLNDCFIPCTPK Unmodified 1535.6748 0.6748494 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 4.62 0.696 4 3 1 5 3 58.959 59.058 2;3 2.54E-05 18098 20211116_3431_TMUAki_TMT10x_P_F4 91.937 70.474 45060000 77989000 814350 82381000 62162000 73354000 50738000 65636000 61474000 56772000 62570000 41961000 72788000 4688200 83597000 59363000 75112000 52395000 66858000 62109000 55812000 60325000 11 11 9 11 11 11 11 11 11 11 11 22042000 37382000 442620 39536000 36687000 52979000 31921000 32953000 30857000 27867000 30090000 20526000 34889000 2429800 40382000 35083000 52692000 32595000 34363000 31411000 27426000 29050000 5 5 4 5 5 5 5 5 5 5 5 23018000 40607000 371730 42845000 25476000 20375000 18816000 32682000 30617000 28906000 32480000 21435000 37899000 2258400 43215000 24280000 22419000 19800000 32495000 30697000 28386000 31275000 6 6 5 6 6 6 6 6 6 6 6 3988900000 2672000000 1317000000 6339 629 5907 33944;33945;33946;33947;33948;33949;33950;33951 40641;40642;40643;40644;40645;40646;40647;40648;40649;40650;40651;40652 40642 12 GDLPREPLVATNLPGR Unmodified 1703.9319 0.93186744 1006 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 0 1 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 48.173 48.389 3 1.4081E-21 15230 20211116_3446_TMUAki_TMT10x_S_F7 174.78 142.34 52670000 92814000 945870 109810000 59144000 74387000 49893000 77281000 80179000 77393000 75840000 49046000 86669000 4496600 110300000 56523000 78030000 52030000 78431000 80089000 75581000 73295000 9 9 6 9 9 9 9 9 9 9 9 11086000 22913000 174670 26536000 28742000 38834000 18984000 19382000 19223000 21139000 17824000 10323000 21394000 662200 26999000 27325000 38366000 19774000 20740000 19496000 20573000 17238000 2 2 1 2 2 2 2 2 2 2 2 41584000 69901000 771200 83276000 30401000 35553000 30909000 57899000 60956000 56254000 58016000 38723000 65275000 3834400 83297000 29198000 39665000 32256000 57691000 60593000 55008000 56057000 7 7 5 7 7 7 7 7 7 7 7 5510400000 2638800000 2871600000 6340 1006 5908 33952;33953;33954;33955;33956 40653;40654;40655;40656;40657;40658;40659;40660;40661 40660 9 GDLSTALEVAIDCYEK Unmodified 1782.8346 0.83458074 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 By MS/MS 2 0 1 1 79.698 79.68 3 2.6053E-06 26337 20211116_3440_TMUAki_TMT10x_S_F2 88.311 74.907 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6341 1018 5909 33957 40662 40662 1 GDMVTLPAGIYHR Oxidation (M) 1444.7133 0.71328381 2684 Q9BV57;Q9BV57-2 ADI1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase yes no 0 0 1 0 By MS/MS 6 0 1 1 43.539 43.705 3 0.00064449 11248 20211116_3445_TMUAki_TMT10x_S_F6 70.54 54.65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6342 2684 5910 33958 40663 40663 2893 1 GDMVTLPAGIYHR Unmodified 1428.7184 0.71836919 2684 Q9BV57;Q9BV57-2 ADI1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase yes no 0 0 0 0 By MS/MS 7 0 1 1 50.355 50.84 3 0.052172 16178 20211116_3446_TMUAki_TMT10x_S_F7 43.594 22.131 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6343 2684 5910 33959 40664 40664 1 GDNITLLQSVSN Unmodified 1259.6357 0.635745 1349 P62304 SNRPE Small nuclear ribonucleoprotein E yes yes 0 0 0 0 By MS/MS By MS/MS 4.1 0.526 2 15 4 18 3 71.391 71.361 2 1.8808E-07 21151 20211116_3442_TMUAki_TMT10x_S_F4 136.33 109.73 13178000 20981000 233680 21497000 15273000 20198000 13851000 15244000 14176000 14760000 15724000 12271000 19580000 1240800 21875000 14617000 20545000 14134000 15735000 14463000 14435000 15120000 17 17 6 17 17 17 17 17 17 17 16 7275600 10646000 50901 11004000 8543100 14726000 7851400 7835200 7488300 8003100 7618000 6774000 9935600 569500 11257000 8171400 14617000 7989000 8319000 7638500 7809300 7344700 15 15 4 15 15 15 15 15 15 15 14 5902000 10335000 182780 10493000 6730000 5472400 5999100 7408800 6688100 6756800 8105600 5496700 9644200 671260 10618000 6445700 5928100 6144700 7415500 6824100 6625900 7775300 2 2 2 2 2 2 2 2 2 2 2 3039900000 1416600000 1623300000 6344 1349 5911 33960;33961;33962;33963;33964;33965;33966;33967;33968;33969;33970;33971;33972;33973;33974;33975;33976;33977;33978;33979;33980 40665;40666;40667;40668;40669;40670;40671;40672;40673;40674;40675;40676;40677;40678;40679;40680;40681;40682;40683;40684;40685;40686 40685 22 GDNLETLVLLNPSDK Unmodified 1626.8465 0.84646606 1961 Q66K74;Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 75.661 75.681 3 0.0098239 24032 20211116_3444_TMUAki_TMT10x_S_F5 56.746 39.667 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6345 1961 5912 33981;33982 40687;40688 40688 2 GDPLLDQR Unmodified 912.46649 0.46649483 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 By MS/MS 2 0 1 1 36.562 36.661 2 0.025521 8820 20211116_3440_TMUAki_TMT10x_S_F2 66.682 46.4 263100 464180 4718.1 526390 259150 236690 304480 308270 308100 287900 400390 245010 433370 26155 528280 249910 260600 306590 309200 316560 282020 383380 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 263100 464180 4718.1 526390 259150 236690 304480 308270 308100 287900 400390 245010 433370 26155 528280 249910 260600 306590 309200 316560 282020 383380 1 1 1 1 1 1 1 1 1 1 1 9787200 0 9787200 6346 352 5913 33983 40689 40689 1 GDPQVYEELFSYSCPK Unmodified 1917.8455 0.84547978 3224 Q9Y262;Q9Y262-2 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 0 0 0 0 By MS/MS By MS/MS 5 1.21 1 3 4 1 2 7 4 76.828 76.838 2;3 6.7807E-08 25421 20211116_3431_TMUAki_TMT10x_P_F4 119.69 107.33 67204000 109580000 336660 101630000 70232000 92407000 76620000 53061000 50862000 59475000 74997000 62571000 102220000 5292500 104100000 67481000 93823000 76588000 56127000 53727000 57822000 71599000 10 10 5 10 10 10 10 10 10 10 10 37302000 58684000 76357 53456000 32616000 61622000 39887000 29754000 29290000 33439000 40008000 34729000 54738000 2617000 55025000 31430000 61557000 39750000 31970000 30642000 32506000 38262000 6 6 3 6 6 6 6 6 6 6 6 29902000 50895000 260300 48175000 37616000 30785000 36734000 23308000 21572000 26036000 34989000 27842000 47481000 2675500 49079000 36051000 32266000 36837000 24157000 23086000 25316000 33337000 4 4 2 4 4 4 4 4 4 4 4 7793600000 4729200000 3064400000 6347 3224 5914 33984;33985;33986;33987;33988;33989;33990;33991;33992;33993;33994 40690;40691;40692;40693;40694;40695;40696;40697;40698;40699 40691 10 GDQENVHPDVMLVQPR Oxidation (M) 1848.8788 0.87884559 1739 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 1 0 By MS/MS By MS/MS 2.8 0.748 2 2 1 2 3 37.404 37.357 3 1.4411E-07 12100 20211116_3441_TMUAki_TMT10x_S_F3 110.6 99.653 837830 1389100 8444.5 1750800 1344100 1213700 920740 1025700 1209800 918200 1186600 780100 1297500 76485 1752600 1278100 1265300 965030 1049200 1217200 901200 1145400 8 8 3 8 8 8 8 8 8 8 8 315440 494710 965.06 649260 883690 822170 447850 419260 551260 370120 417560 293700 462190 33169 654020 836300 817850 480270 445140 551540 363500 406950 3 3 1 3 3 3 3 3 3 3 3 522390 894400 7479.4 1101600 460380 391480 472890 606470 658500 548080 769030 486400 835350 43316 1098500 441810 447450 484760 604020 665710 537690 738440 5 5 2 5 5 5 5 5 5 5 5 222110000 121340000 100770000 6348 1739 5915 33995;33996;33997;33998;33999 40700;40701;40702;40703;40704;40705;40706;40707 40705 2340 8 GDQENVHPDVMLVQPR Unmodified 1832.8839 0.88393097 1739 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 41.406 41.461 3 3.9128E-05 12466 20211116_3430_TMUAki_TMT10x_P_F3 82.707 70.08 771130 1058700 4988.8 1367600 1897200 1458100 932990 693840 852920 644610 1098100 717900 989030 67845 1374700 1794100 1462700 994310 742550 879910 631580 1051700 2 2 1 2 2 2 2 2 2 2 2 771130 1058700 4988.8 1367600 1897200 1458100 932990 693840 852920 644610 1098100 717900 989030 67845 1374700 1794100 1462700 994310 742550 879910 631580 1051700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25282000 25282000 0 6349 1739 5915 34000;34001 40708;40709;40710 40708 3 GDREQLLQR Acetyl (Protein N-term) 1155.5996 0.59963426 1515 Q04917 YWHAH 14-3-3 protein eta yes yes 1 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 30.877 30.901 2 3.9356E-11 8295 20211116_3439_TMUAki_TMT10x_S_F1 130.04 80 239080 432820 325.42 345000 504670 459300 362620 316060 443270 306880 377570 222610 403540 13738 359870 480350 457630 377750 328300 445090 300090 366260 2 2 1 2 2 2 2 2 2 2 2 122170 198210 325.42 158610 358230 301770 202850 143560 212590 148610 195340 113760 184810 13738 166750 339600 295040 214190 154100 215240 144930 188970 1 1 1 1 1 1 1 1 1 1 1 116910 234610 0 186390 146440 157520 159780 172490 230680 158270 182230 108860 218740 0 193120 140750 162590 163560 174200 229860 155160 177290 1 1 0 1 1 1 1 1 1 1 1 138580000 41421000 97158000 6350 1515 5916 34002;34003 40711;40712 40712 2 GDSKKDDEENYLDLFSHK Unmodified 2138.9756 0.97564233 1538 Q07666;Q07666-2;Q07666-3 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 0 0 0 2 By MS/MS By MS/MS 5 1.41 2 2 2 2 2 5 5 55.108 55.242 5 2.2401E-17 17004 20211116_3442_TMUAki_TMT10x_S_F4 151.57 130.2 97349000 159990000 1296900 207300000 137630000 150320000 99225000 113370000 108450000 102660000 123160000 90645000 149460000 9118300 207290000 131030000 155820000 102940000 116810000 110440000 100700000 118350000 16 16 12 16 16 16 16 16 16 16 16 57522000 92468000 707420 116350000 106680000 123620000 74211000 68474000 63578000 62368000 71364000 53558000 86372000 5419200 117110000 101470000 124250000 76644000 72220000 65421000 61163000 68601000 10 10 8 10 10 10 10 10 10 10 10 39827000 67520000 589450 90959000 30943000 26706000 25014000 44897000 44869000 40291000 51793000 37087000 63091000 3699100 90177000 29555000 31578000 26297000 44592000 45023000 39540000 49749000 6 6 4 6 6 6 6 6 6 6 6 18592000000 10470000000 8121800000 6351 1538 5917 34004;34005;34006;34007;34008;34009;34010;34011;34012;34013 40713;40714;40715;40716;40717;40718;40719;40720;40721;40722;40723;40724;40725;40726;40727;40728 40724 16 GDSLSLKGETVNDCHAEIISR Unmodified 2300.1067 0.10667328 1242 P55265;P55265-5;P55265-4;P55265-3;P55265-2 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 0 1 By matching By MS/MS 4.67 0.471 1 2 1 2 44.411 44.571 4 1.2999E-67 11388 20211116_3444_TMUAki_TMT10x_S_F5 243.99 227.06 2841400 5138700 109020 6235300 2015600 2363500 2041500 4190700 4065200 4012200 4435600 2646400 4799100 325610 6225700 1939900 2687700 2132100 4163300 4060200 3925900 4267400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2841400 5138700 109020 6235300 2015600 2363500 2041500 4190700 4065200 4012200 4435600 2646400 4799100 325610 6225700 1939900 2687700 2132100 4163300 4060200 3925900 4267400 2 2 2 2 2 2 2 2 2 2 2 1369400000 650200000 719190000 6352 1242 5918 34014;34015;34016 40729;40730 40730 2 GDSVIVVLR Unmodified 956.56548 0.56548059 1354 P62316;P62316-2 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes no 0 0 0 0 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 50.653 50.817 2 8.008E-05 14959 20211116_3433_TMUAki_TMT10x_P_F5 141.52 115.13 20539000 34856000 157230 35181000 23714000 29558000 26112000 21802000 22687000 22635000 27487000 19125000 32525000 1840600 35784000 22804000 30284000 26255000 22583000 23401000 22072000 26367000 5 5 3 5 5 5 5 5 5 5 5 9929700 16315000 69861 16516000 14507000 20038000 13756000 9987500 10634000 10821000 13085000 9245900 15225000 925940 16887000 13894000 19970000 13896000 10687000 11042000 10534000 12547000 2 2 1 2 2 2 2 2 2 2 2 10609000 18541000 87369 18666000 9206100 9520300 12355000 11815000 12054000 11814000 14402000 9878700 17301000 914640 18897000 8910000 10314000 12358000 11897000 12359000 11538000 13821000 3 3 2 3 3 3 3 3 3 3 3 2563500000 1200500000 1363000000 6353 1354 5919 34017;34018;34019;34020;34021 40731;40732;40733;40734;40735 40732 5 GDSVIVVLRNPLIAGK Unmodified 1649.9828 0.98284038 1354 P62316;P62316-2 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes no 0 0 0 1 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 69.195 68.995 3 6.7316E-29 23884 20211116_3430_TMUAki_TMT10x_P_F3 185.14 155.82 42601000 70804000 193250 64889000 55084000 57939000 53180000 47125000 40815000 45027000 51684000 39665000 66046000 3588900 66512000 52762000 59210000 53660000 48396000 42449000 44062000 49521000 6 6 4 6 6 6 6 6 6 6 6 17086000 25940000 9221 26092000 17567000 33530000 23738000 20045000 16482000 18151000 20701000 15907000 24205000 1203800 26718000 16985000 33397000 23531000 21004000 17234000 17805000 19838000 2 2 1 2 2 2 2 2 2 2 2 25516000 44864000 184030 38798000 37517000 24408000 29443000 27080000 24334000 26876000 30983000 23759000 41840000 2385100 39793000 35777000 25813000 30129000 27392000 25215000 26257000 29682000 4 4 3 4 4 4 4 4 4 4 4 3733200000 1413200000 2320000000 6354 1354 5920 34022;34023;34024;34025;34026;34027 40736;40737;40738;40739;40740;40741;40742 40737 7 GDTNIKPILQVINIRPITTGNSPPR Unmodified 2713.5239 0.52389713 828 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 0 0 0 2 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 67.523 67.547 4 4.4956E-87 20966 20211116_3445_TMUAki_TMT10x_S_F6 268.45 260.27 57778000 96198000 514180 97613000 68715000 93577000 68570000 69634000 64821000 67841000 75267000 53798000 89768000 5075800 99421000 65893000 95041000 69445000 71954000 66479000 66331000 72284000 10 10 6 10 10 10 10 10 10 10 10 33448000 54116000 372930 55149000 35801000 65625000 40459000 37588000 34604000 37660000 41234000 31145000 50499000 2953800 56345000 34454000 65578000 40614000 39634000 35695000 36778000 39571000 5 5 3 5 5 5 5 5 5 5 5 24329000 42082000 141260 42463000 32915000 27952000 28111000 32047000 30217000 30181000 34033000 22653000 39269000 2122000 43076000 31439000 29463000 28831000 32320000 30784000 29553000 32713000 5 5 3 5 5 5 5 5 5 5 5 18338000000 9344300000 8993900000 6355 828 5921 34028;34029;34030;34031;34032 40743;40744;40745;40746;40747;40748;40749;40750;40751;40752 40750 10 GDVAEGDLIEHFSQFGTVEK Unmodified 2177.0277 0.027677899 1601 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 0 0 0 0 By MS/MS By MS/MS 3.6 1.5 1 2 1 3 2 1 4 6 72.827 72.729 3;4 8.524E-43 24150 20211116_3442_TMUAki_TMT10x_S_F4 217.91 199.08 64793000 95769000 537800 117230000 56678000 93838000 58687000 42288000 47122000 58336000 60327000 60329000 89443000 4904900 117730000 54397000 95880000 59066000 46078000 48913000 56313000 57787000 15 15 9 15 15 15 15 15 15 15 15 35910000 50841000 306250 63856000 29101000 62623000 30783000 21905000 24665000 30672000 31967000 33436000 47488000 2507400 64206000 27946000 62957000 30947000 24589000 25620000 29595000 30611000 7 7 3 7 7 7 7 7 7 7 7 28883000 44928000 231540 53376000 27577000 31215000 27904000 20383000 22457000 27664000 28360000 26893000 41954000 2397500 53524000 26452000 32923000 28119000 21489000 23294000 26718000 27175000 8 8 6 8 8 8 8 8 8 8 8 6345400000 2833400000 3512000000 6356 1601 5922 34033;34034;34035;34036;34037;34038;34039;34040;34041;34042 40753;40754;40755;40756;40757;40758;40759;40760;40761;40762;40763;40764;40765;40766;40767;40768;40769 40765 17 GDVEEDETIPDSEQDIRPR Unmodified 2198.9927 0.99274896 2381 Q92973;Q92973-2;Q92973-3 TNPO1 Transportin-1 yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 41.281 41.246 3 4.3664E-71 12465 20211116_3439_TMUAki_TMT10x_S_F1 289.95 271.49 1788300 2826200 11804 4325000 3314600 3267500 2102700 2999700 3775600 2531000 3138000 1665000 2642700 153180 4290500 3146700 3387900 2248000 3049400 3745200 2491200 3046900 6 6 2 6 6 6 6 6 6 6 6 804450 1219600 9601.6 1879100 2860500 2785800 1653300 1264800 1661600 1176600 1330900 749000 1140500 91633 1883900 2712200 2747900 1740400 1360100 1678300 1152800 1294100 2 2 1 2 2 2 2 2 2 2 2 983870 1606600 2202.6 2445900 454090 481720 449430 1735000 2114100 1354400 1807100 915980 1502200 61545 2406600 434470 640060 507660 1689300 2067000 1338400 1752700 4 4 1 4 4 4 4 4 4 4 4 1278200000 954210000 323940000 6357 2381 5923 34043;34044;34045 40770;40771;40772;40773;40774;40775 40772 6 GDVGLVAENSR Unmodified 1115.5571 0.55710075 724 P18858;P18858-3;P18858-2 LIG1 DNA ligase 1 yes no 0 0 0 0 By MS/MS 2 0 1 1 33.307 33.389 2 0.061409 7488 20211116_3440_TMUAki_TMT10x_S_F2 52.49 37.972 48277 80966 0 73508 42490 30124 46012 32511 41249 38022 49125 44940 75522 2690.8 74869 40750 33418 46341 33099 42451 36907 47146 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 48277 80966 0 73508 42490 30124 46012 32511 41249 38022 49125 44940 75522 2690.8 74869 40750 33418 46341 33099 42451 36907 47146 1 1 0 1 1 1 1 1 1 1 1 1422300 0 1422300 6358 724 5924 34046 40776 40776 1 GDVPTKRPPVLR Unmodified 1333.783 0.78301836 1358 P62424 RPL7A 60S ribosomal protein L7a yes yes 0 0 0 2 By MS/MS By MS/MS 1.67 0.745 3 2 1 3 3 33.032 32.921 3;4 3.8221E-07 7142 20211116_3428_TMUAki_TMT10x_P_F1 128.57 108.78 4998200 8725600 30832 6159400 11555000 11042000 6010500 6507300 7353800 6507700 7649000 4654000 8132300 532460 6537900 10941000 10846000 6428200 6845000 7432900 6355800 7369600 6 6 3 6 6 6 6 6 6 6 6 3651200 6367100 23369 4308700 9795100 9114000 4369100 4772400 5388000 4715800 5545900 3399800 5933500 409720 4612800 9256900 8890800 4747000 5069600 5442400 4608000 5345000 3 3 2 3 3 3 3 3 3 3 3 1347000 2358500 7462.6 1850700 1759600 1928300 1641500 1734900 1965800 1792000 2103200 1254200 2198900 122740 1925100 1684600 1955300 1681200 1775400 1990600 1747800 2024600 3 3 1 3 3 3 3 3 3 3 3 934340000 808070000 126270000 6359 1358 5925 34047;34048;34049;34050;34051;34052 40777;40778;40779;40780;40781;40782 40777 6 GDVTAEEAAGASPAK Unmodified 1372.647 0.64703797 1087 P49006 MARCKSL1 MARCKS-related protein yes yes 0 0 0 0 By MS/MS By MS/MS 2.38 0.857 1 4 2 1 4 4 34.315 34.26 3 1.3021E-14 11694 20211116_3441_TMUAki_TMT10x_S_F3 153.32 139.41 1946800 3284500 28685 3313600 2833100 2578100 2254500 1628800 2034100 1660200 2616900 1812900 3064900 200550 3367400 2703700 2650400 2310200 1704900 2099700 1620100 2506400 6 6 6 6 6 6 6 6 6 6 6 952080 1565300 14262 1528700 1845900 1761400 1126000 757340 928060 758940 1232700 886590 1460400 104740 1565600 1752700 1757400 1173700 820730 963620 741160 1179700 3 3 3 3 3 3 3 3 3 3 3 994730 1719200 14423 1784900 987210 816730 1128400 871510 1106000 901260 1384200 926300 1604500 95807 1801800 951010 892980 1136500 884220 1136000 878990 1326700 3 3 3 3 3 3 3 3 3 3 3 418250000 254700000 163540000 6360 1087 5926 34053;34054;34055;34056;34057;34058;34059;34060 40783;40784;40785;40786;40787;40788;40789;40790 40790 8 GDVTITNDGATILK Unmodified 1416.746 0.74602373 1147 P50991 CCT4 T-complex protein 1 subunit delta yes yes 0 0 0 0 By MS/MS 4 0 1 1 55.807 55.959 3 0.00037809 16812 20211116_3431_TMUAki_TMT10x_P_F4 68.168 45.936 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6361 1147 5927 34061 40791 40791 1 GDVVIVLTGWRPGSGFTNTMR Oxidation (M) 2278.1528 0.15283561 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 1 1 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 72.572 72.553 3 0.0018524 22758 20211116_3444_TMUAki_TMT10x_S_F5 60.602 53.285 14941000 26372000 154990 23000000 18259000 23564000 19155000 11255000 9982200 14103000 17000000 13912000 24595000 1064900 23711000 17534000 23694000 19099000 12150000 10806000 13656000 16182000 6 6 3 6 6 6 6 6 6 6 6 7082300 12770000 149720 11122000 9060100 16938000 10437000 5380000 5023400 6934400 8288600 6595400 11910000 481780 11549000 8731000 16637000 10347000 6099900 5463200 6708500 7894600 3 3 2 3 3 3 3 3 3 3 3 7858800 13602000 5262.9 11879000 9199000 6625900 8718100 5875500 4958800 7168600 8711200 7316700 12685000 583160 12161000 8802700 7057200 8751900 6050300 5342400 6948000 8287200 3 3 1 3 3 3 3 3 3 3 3 3291600000 1622700000 1668900000 6362 670;671 5928 34062;34063;34064;34065;34066 40792;40793;40794;40795;40796;40797;40798 40796 737 7 GDVVNQDDLYQALASGK Unmodified 1791.8639 0.86390703 3085 Q9UBQ7 GRHPR Glyoxylate reductase/hydroxypyruvate reductase yes yes 0 0 0 0 By MS/MS By MS/MS 5.14 0.833 2 2 3 4 3 70.769 70.741 3 1.7618E-08 23339 20211116_3442_TMUAki_TMT10x_S_F4 119.23 101.95 31311000 51887000 222010 47742000 39318000 49190000 34748000 41978000 41146000 37596000 41815000 29152000 48401000 2597900 49020000 37578000 49860000 35684000 42913000 41603000 36899000 40317000 8 8 4 8 8 8 8 8 8 8 8 16841000 26589000 156030 24698000 19530000 33624000 20342000 21818000 21214000 19777000 22210000 15680000 24803000 1337900 25463000 18741000 33438000 20618000 22718000 21579000 19400000 21394000 4 4 2 4 4 4 4 4 4 4 4 14470000 25298000 65980 23045000 19788000 15566000 14407000 20160000 19932000 17818000 19605000 13473000 23597000 1260000 23557000 18837000 16422000 15066000 20195000 20024000 17499000 18922000 4 4 2 4 4 4 4 4 4 4 4 3199100000 1768500000 1430500000 6363 3085 5929 34067;34068;34069;34070;34071;34072;34073 40799;40800;40801;40802;40803;40804;40805;40806;40807 40804 9 GDYPLEAVR Unmodified 1018.5084 0.50835964 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 42.626 42.574 2 0.0001067 12749 20211116_3430_TMUAki_TMT10x_P_F3 139.74 111.63 50784000 72457000 252210 109640000 120990000 88936000 60653000 60441000 72147000 51484000 74270000 47281000 67749000 4439500 108910000 114460000 91239000 65034000 62622000 72970000 50651000 71580000 13 13 4 13 13 13 13 13 13 13 13 31011000 44381000 62217 66846000 107220000 75782000 46154000 35325000 43176000 30217000 44157000 28870000 41497000 3026600 66741000 101240000 75742000 49917000 37805000 44089000 29722000 42567000 7 7 1 7 7 7 7 7 7 7 7 19773000 28075000 189990 42792000 13772000 13154000 14499000 25116000 28972000 21267000 30113000 18411000 26252000 1412900 42172000 13228000 15497000 15117000 24817000 28881000 20929000 29013000 6 6 3 6 6 6 6 6 6 6 6 3694200000 2489700000 1204500000 6364 670;671 5930 34074;34075;34076;34077;34078;34079;34080;34081 40808;40809;40810;40811;40812;40813;40814;40815;40816;40817;40818;40819;40820 40812 13 GEAAAERPGEAAVASSPSK Unmodified 1783.8701 0.87005504 857 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate yes yes 0 0 0 1 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 31.845 31.714 3;4 1.8993E-41 7083 20211116_3431_TMUAki_TMT10x_P_F4 215.58 182.96 4866800 7968400 56633 7924300 8526000 6566700 5397900 2992500 4005400 3491200 5800300 4531900 7435200 503640 8066900 8099700 6693100 5595800 3237900 4199500 3389200 5539700 5 5 3 5 5 5 5 5 5 5 5 2976300 4793600 39401 4507500 7132300 5253600 3272600 1896200 2461700 2097400 3411900 2771500 4471900 341680 4629700 6744200 5230500 3496300 2103400 2573500 2040200 3261900 2 2 2 2 2 2 2 2 2 2 2 1890500 3174800 17232 3416800 1393700 1313100 2125300 1096300 1543800 1393800 2388400 1760400 2963300 161960 3437200 1355500 1462600 2099500 1134500 1626000 1349000 2277800 3 3 1 3 3 3 3 3 3 3 3 804110000 519930000 284180000 6365 857 5931 34082;34083;34084;34085;34086 40821;40822;40823;40824;40825 40821 5 GEAHLAVNDFELAR Unmodified 1540.7634 0.76340513 1497 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 2 4 47.981 47.953 3 2.148E-08 16259 20211116_3441_TMUAki_TMT10x_S_F3 121.48 97.626 32095000 49454000 386160 58132000 43845000 41918000 31530000 40277000 38273000 37126000 43754000 29885000 46179000 3010800 58449000 41743000 43666000 32835000 40940000 38835000 36389000 42038000 7 7 3 7 7 7 7 7 7 7 7 10599000 15335000 0 19318000 23028000 23075000 14071000 13027000 12193000 11686000 13908000 9868100 14324000 993970 19483000 21851000 23049000 14683000 13712000 12547000 11468000 13364000 2 2 0 2 2 2 2 2 2 2 2 21496000 34119000 386160 38814000 20817000 18843000 17459000 27251000 26080000 25440000 29845000 20017000 31854000 2016800 38966000 19891000 20617000 18151000 27228000 26288000 24921000 28674000 5 5 3 5 5 5 5 5 5 5 5 3242800000 1227900000 2014900000 6366 1497 5932 34087;34088;34089;34090;34091;34092 40826;40827;40828;40829;40830;40831;40832;40833 40831 8 GEATVSFDDPPSAK Unmodified 1419.6518 0.65178899 940;2366 P35637;P35637-2;Q92804;Q92804-2 FUS;TAF15 RNA-binding protein FUS;TATA-binding protein-associated factor 2N no no 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 2 3 46.166 46.161 3 1.9876E-09 15523 20211116_3441_TMUAki_TMT10x_S_F3 129.37 109.53 12636000 17580000 125280 24627000 20558000 17382000 13555000 11925000 12626000 11167000 14676000 11767000 16430000 1275300 24517000 19544000 18032000 14087000 12377000 12958000 10937000 14094000 4 4 4 4 4 4 4 4 4 4 4 6728200 9497100 100720 13946000 15496000 13469000 8038700 6503400 6873900 5866800 7837600 6265300 8878400 774480 13905000 14677000 13594000 8507900 6944700 7078100 5756100 7530900 2 2 2 2 2 2 2 2 2 2 2 5908100 8082500 24559 10681000 5061900 3913100 5516200 5421100 5752400 5299700 6838200 5501200 7551600 500860 10612000 4866500 4437800 5578800 5432100 5880300 5180900 6563000 2 2 2 2 2 2 2 2 2 2 2 1314300000 885280000 428990000 6367 940;2366 5933 34093;34094;34095;34096;34097 40834;40835;40836;40837;40838 40837 5 GEAVGSITQPLPSSYLIIR Unmodified 2000.0942 0.094241321 2737 Q9BZF1;Q9BZF1-3;Q9BZF1-2 OSBPL8 Oxysterol-binding protein-related protein 8 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 73.577 73.514 3 1.4239E-08 23735 20211116_3436_TMUAki_TMT10x_P_F8 110.74 91.907 21236000 35195000 879750 34431000 27408000 32181000 27613000 27659000 25226000 26940000 28805000 19780000 32838000 2667000 35146000 26339000 32821000 27925000 28328000 25895000 26340000 27676000 4 4 4 4 4 4 4 4 4 4 4 6512100 10071000 215980 9777200 6669400 13712000 8233800 8021000 7702300 8203000 8428700 6065000 9396500 743390 10054000 6447300 13598000 8253600 8447800 7884800 8004000 8108300 2 2 2 2 2 2 2 2 2 2 2 14724000 25123000 663760 24654000 20739000 18469000 19380000 19638000 17524000 18737000 20376000 13715000 23441000 1923600 25092000 19892000 19223000 19671000 19880000 18010000 18336000 19568000 2 2 2 2 2 2 2 2 2 2 2 1323700000 705360000 618380000 6368 2737 5934 34098;34099 40839;40840;40841;40842 40839 4 GEAVLRPGLDAEPELSPEEQR Unmodified 2291.1394 0.13935361 2636 Q9BRJ6 C7orf50 Uncharacterized protein C7orf50 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0 2 1 1 49.663 49.447 3 4.3632E-19 15828 20211116_3430_TMUAki_TMT10x_P_F3 143.98 123.89 1800900 3016000 19464 3581300 3072100 3080500 2105400 2569100 2648900 2400700 2710200 1677000 2816300 183970 3606100 2922500 3157600 2203000 2632800 2673200 2351600 2612500 2 2 1 2 2 2 2 2 2 2 2 891060 1519500 19464 1858900 2288600 2349300 1429500 1311300 1372900 1312300 1422100 829810 1419100 111590 1879700 2174000 2339700 1493200 1385600 1400900 1281600 1370300 1 1 1 1 1 1 1 1 1 1 1 909870 1496500 0 1722500 783560 731140 675910 1257800 1276000 1088400 1288100 847170 1397200 72379 1726400 748520 817820 709810 1247200 1272300 1069900 1242200 1 1 0 1 1 1 1 1 1 1 1 377340000 137100000 240240000 6369 2636 5935 34100;34101 40843;40844 40843 2 GEDSVPDTVHHVVVPVNPK Unmodified 2024.0327 0.032703697 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 42.565 42.715 4 1.5701E-09 11529 20211116_3431_TMUAki_TMT10x_P_F4 120.63 100.52 3762700 6000800 198550 8771400 5538200 6071800 3719800 3679900 4330900 3245700 5106100 3504900 5609700 521860 8712200 5276600 6298300 3887200 3849200 4406700 3187800 4901700 2 2 2 2 2 2 2 2 2 2 2 1989800 2867400 98272 4096500 4353000 4444300 2315200 1776100 2143400 1470600 2384100 1853400 2680200 289650 4097500 4128500 4446200 2449700 1931400 2196600 1448800 2292400 1 1 1 1 1 1 1 1 1 1 1 1772900 3133400 100280 4675000 1185200 1627400 1404600 1903800 2187500 1775200 2722000 1651500 2929500 232210 4614800 1148000 1852100 1437500 1917800 2210100 1739000 2609300 1 1 1 1 1 1 1 1 1 1 1 879410000 601960000 277450000 6370 2334 5936 34102;34103 40845;40846 40845 2 GEEGHDPKEPEQLR Unmodified 1619.754 0.75396265 1168 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 0 0 0 1 By MS/MS 2 0 1 1 29.274 29.04 4 0.00061727 7191 20211116_3429_TMUAki_TMT10x_P_F2 79.652 66.671 88741 152500 0 136190 175100 182970 117040 95808 119270 97025 128410 82604 142240 5731 140790 166250 181550 121830 101850 121560 94710 123590 1 1 0 1 1 1 1 1 1 1 1 88741 152500 0 136190 175100 182970 117040 95808 119270 97025 128410 82604 142240 5731 140790 166250 181550 121830 101850 121560 94710 123590 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8886500 8886500 0 6371 1168 5937 34104 40847 40847 1 GEEILSGAQR Unmodified 1058.5356 0.53563702 678 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS 3 0 1 1 35.316 35.076 2 0.0037983 11062 20211116_3441_TMUAki_TMT10x_S_F3 79.128 26.537 434920 784510 0 757480 454680 433830 508280 533260 641790 465820 694020 404940 731930 35368 769830 437250 464150 516900 535150 648920 457720 667880 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 434920 784510 0 757480 454680 433830 508280 533260 641790 465820 694020 404940 731930 35368 769830 437250 464150 516900 535150 648920 457720 667880 1 1 0 1 1 1 1 1 1 1 1 24727000 0 24727000 6372 678 5938 34105 40848 40848 1 GEELGGGQDPVQLLSGFPR Unmodified 1954.9749 0.97485447 1510 Q04323;Q04323-2 UBXN1 UBX domain-containing protein 1 yes no 0 0 0 0 By MS/MS 4 0 2 2 76.49 76.513 3 0.0015288 25263 20211116_3431_TMUAki_TMT10x_P_F4 64.26 51.877 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6373 1510 5939 34106;34107 40849;40850 40850 2 GEFEGFVAVVNK Unmodified 1294.6558 0.65575216 3013 Q9NY33;Q9NY33-4 DPP3 Dipeptidyl peptidase 3 yes no 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 2 4 3 3 68.811 68.761 2;3 1.5454E-14 21578 20211116_3445_TMUAki_TMT10x_S_F6 146.11 115.54 7187600 11846000 32217 11257000 8020100 11164000 8064600 6565100 6705600 7018100 8225600 6692200 11051000 595980 11524000 7690400 11275000 8135900 6920600 6935200 6835600 7887900 3 3 1 3 3 3 3 3 3 3 3 5077200 7895500 0 7785200 5433100 8842000 5785800 4535900 4655200 4870300 5647900 4727000 7367000 384320 7965800 5215700 8845700 5815300 4839100 4820500 4742800 5417600 2 2 0 2 2 2 2 2 2 2 2 2110400 3950000 32217 3471300 2587000 2321700 2278900 2029200 2050400 2147800 2577700 1965200 3684000 211660 3558000 2474700 2429500 2320600 2081400 2114700 2092800 2470200 1 1 1 1 1 1 1 1 1 1 1 1048400000 664850000 383520000 6374 3013 5940 34108;34109;34110;34111;34112;34113 40851;40852;40853;40854;40855;40856 40856 6 GEFGGFGSVSGK Unmodified 1127.5247 0.52473799 1553 Q09028;Q09028-3;Q09028-2;Q09028-4 RBBP4 Histone-binding protein RBBP4 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 52.49 52.65 2 6.4914E-15 15696 20211116_3433_TMUAki_TMT10x_P_F5 159.09 118.36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6375 1553 5941 34114;34115 40857;40858 40857 2 GEFGVYLVSDGSSRPYR Unmodified 1887.9115 0.91152593 318 O75306;O75306-2 NDUFS2 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 53.05 53.497 3 1.6621E-36 16674 20211116_3435_TMUAki_TMT10x_P_F7 216 174.36 26177000 42399000 250560 42290000 27794000 39026000 25701000 26257000 25503000 25873000 29522000 24372000 39562000 1978300 43102000 26584000 39672000 26173000 27329000 26096000 25284000 28354000 6 6 4 6 6 6 6 6 6 6 6 13538000 22260000 246360 22047000 15760000 24309000 13158000 13024000 12390000 13287000 15906000 12607000 20770000 1383100 22541000 15061000 24371000 13459000 13820000 12763000 12966000 15235000 3 3 3 3 3 3 3 3 3 3 3 12639000 20139000 4207 20243000 12034000 14718000 12543000 13232000 13113000 12585000 13616000 11765000 18792000 595220 20561000 11523000 15301000 12714000 13509000 13333000 12318000 13120000 3 3 1 3 3 3 3 3 3 3 3 3010400000 1046600000 1963800000 6376 318 5942 34116;34117;34118 40859;40860;40861;40862;40863;40864 40859 6 GEFLHLCR Unmodified 1030.5018 0.50183447 2258 Q8NI27 THOC2 THO complex subunit 2 yes yes 0 0 0 0 By MS/MS 6 0 1 1 38.686 38.849 3 0.00030178 9315 20211116_3445_TMUAki_TMT10x_S_F6 133.55 90.302 164430 243590 2651.8 305890 151730 144330 142630 196110 195880 207810 223880 153120 227530 15926 305240 145420 158160 146800 197130 197930 202470 215110 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 164430 243590 2651.8 305890 151730 144330 142630 196110 195880 207810 223880 153120 227530 15926 305240 145420 158160 146800 197130 197930 202470 215110 1 1 1 1 1 1 1 1 1 1 1 14626000 0 14626000 6377 2258 5943 34119 40865 40865 1 GEFVTTVQQR Unmodified 1163.5935 0.59348625 988 P40925;P40925-3;P40925-2 MDH1 Malate dehydrogenase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 4.45 0.782 1 5 4 1 4 7 35.446 35.473 2;3 6.9995E-19 9288 20211116_3431_TMUAki_TMT10x_P_F4 247.75 177.5 7771400 11005000 38285 14002000 17575000 12469000 8298300 8522000 9226500 7284700 9992200 7235600 10280000 737730 14050000 16616000 12708000 8931100 8826700 9373000 7165600 9615400 18 18 8 18 18 18 18 18 18 18 18 5392800 7267700 18774 9583900 15326000 10581000 5924900 6199000 6799700 5187200 6839300 5020900 6790200 549350 9628400 14457000 10619000 6528600 6493500 6880700 5107800 6596400 4 4 1 4 4 4 4 4 4 4 4 2378600 3737500 19511 4418100 2249200 1887700 2373300 2323000 2426800 2097500 3152900 2214700 3490000 188380 4421300 2159400 2088900 2402500 2333200 2492300 2057800 3019000 14 14 7 14 14 14 14 14 14 14 14 796310000 500150000 296160000 6378 988 5944 34120;34121;34122;34123;34124;34125;34126;34127;34128;34129;34130 40866;40867;40868;40869;40870;40871;40872;40873;40874;40875;40876;40877;40878;40879;40880;40881;40882;40883;40884 40866 19 GEFYNEASNLQVAIR Unmodified 1709.8373 0.83729835 1123 P49821;P49821-2 NDUFV1 NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial yes no 0 0 0 0 By MS/MS By matching 4.67 0.471 1 2 2 1 61.717 61.837 3 0.10503 19515 20211116_3433_TMUAki_TMT10x_P_F5 24.201 10.539 6057300 9168700 0 10480000 10963000 12700000 6886700 7183600 7616400 7329500 7564700 5639500 8560300 511050 10632000 10406000 12677000 7221200 7586600 7714600 7152400 7299000 1 1 0 1 1 1 1 1 1 1 1 6057300 9168700 0 10480000 10963000 12700000 6886700 7183600 7616400 7329500 7564700 5639500 8560300 511050 10632000 10406000 12677000 7221200 7586600 7714600 7152400 7299000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 939430000 676260000 263170000 6379 1123 5945 34131;34132;34133 40885 40885 1 GEGAGPPPPLPPAQPGAEGGGDR Unmodified 2079.9974 0.99738082 2973;1941 Q9NVI7;Q9NVI7-2;Q5T9A4 ATAD3A;ATAD3B ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B no no 0 0 0 0 By MS/MS By MS/MS 2.8 0.4 1 4 3 2 39.34 39.26 3 3.4803E-09 13626 20211116_3441_TMUAki_TMT10x_S_F3 101.89 93.345 1043400 1629300 5357.9 1969700 3331400 1750800 1210700 1093600 1384400 1011900 1673600 971330 1521600 99273 1982100 3139700 1782300 1344300 1142600 1411000 991660 1605500 4 4 1 4 4 4 4 4 4 4 4 595540 896190 0 1164400 2925900 1356700 775400 501150 729090 505110 973410 554320 837240 57744 1171800 2749900 1351000 897530 552830 752420 493150 931450 3 3 0 3 3 3 3 3 3 3 3 447830 733160 5357.9 805260 405490 394120 435290 592470 655310 506810 700190 417020 684380 41529 810260 389880 431320 446780 589810 658630 498510 674060 1 1 1 1 1 1 1 1 1 1 1 103850000 32311000 71535000 6380 2973;1941 5946 34134;34135;34136;34137;34138 40886;40887;40888;40889;40890;40891 40891 6 GEGESPPVNGTDEAAGATGDAIEPAPPSQGAEAK Unmodified 3176.4382 0.43817399 1087 P49006 MARCKSL1 MARCKS-related protein yes yes 0 0 0 0 By MS/MS 2 1 1 1 2 48.723 48.421 4 8.2273E-39 16499 20211116_3441_TMUAki_TMT10x_S_F3 162.12 155.32 3923100 7856100 10908 9260400 1258300 2403200 1101200 14649000 18773000 9190700 11558000 3652700 7335800 232180 9245400 1202300 3146300 1672300 14113000 18069000 9201000 11373000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3923100 7856100 10908 9260400 1258300 2403200 1101200 14649000 18773000 9190700 11558000 3652700 7335800 232180 9245400 1202300 3146300 1672300 14113000 18069000 9201000 11373000 3 3 1 3 3 3 3 3 3 3 3 1032200000 0 1032200000 6381 1087 5947 34139;34140 40892;40893;40894 40894 3 GEGGTTNPHIFPEGSEPK Unmodified 1852.8592 0.85915601 2463 Q96FW1;Q96FW1-2 OTUB1 Ubiquitin thioesterase OTUB1 yes no 0 0 0 0 By MS/MS 4 0 1 1 39.419 39.47 3 3.9506E-12 10170 20211116_3431_TMUAki_TMT10x_P_F4 128.59 107.03 468200 829790 0 1066600 2311600 1871600 910810 771440 1021900 702040 844150 435920 775170 62678 1083400 2181100 1832300 1000600 837790 1028400 688510 819820 1 1 0 1 1 1 1 1 1 1 1 468200 829790 0 1066600 2311600 1871600 910810 771440 1021900 702040 844150 435920 775170 62678 1083400 2181100 1832300 1000600 837790 1028400 688510 819820 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 236680000 236680000 0 6382 2463 5948 34141 40895 40895 1 GEGQLGPAER Unmodified 1012.4938 0.49377221 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 2.2 1.17 2 1 1 1 3 2 29.343 29.239 2 2.557E-08 5699 20211116_3428_TMUAki_TMT10x_P_F1 166.86 131.43 1204000 2029300 9375.5 1792500 1206700 1523400 1342200 762440 839950 790010 1297700 1121100 1892700 103480 1841400 1160600 1551400 1338800 814430 892720 770430 1237700 4 4 2 4 4 4 4 4 4 4 4 712420 1225500 6778.3 1073300 816330 1164000 816030 468400 528750 494840 794670 663380 1142900 65561 1107000 783060 1164500 818860 512130 559920 482190 758360 2 2 1 2 2 2 2 2 2 2 2 491600 803810 2597.1 719230 390330 359420 526140 294050 311200 295180 503040 457720 749730 37922 734330 377590 386880 519930 302300 332800 288240 479320 2 2 1 2 2 2 2 2 2 2 2 81790000 54174000 27616000 6383 653 5949 34142;34143;34144;34145;34146 40896;40897;40898;40899;40900 40896 5 GEGYAKPNEGAIVEVALEGYYK Unmodified 2356.1587 0.15869207 1497 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 4.44 1.54 2 4 3 4 3 2 9 9 74.39 74.341 3;4 1.5894E-26 27054 20211116_3441_TMUAki_TMT10x_S_F3 165.66 153.9 146090000 249750000 1103400 219380000 168780000 215810000 190420000 143300000 146330000 163920000 179540000 136020000 232930000 12513000 225900000 162390000 218440000 190650000 149970000 151970000 159240000 172160000 32 32 20 32 32 32 32 32 32 32 32 64942000 106490000 528730 93330000 61616000 123670000 77306000 66296000 68260000 76358000 77568000 60467000 99314000 5321900 96595000 59474000 122830000 77315000 70602000 70169000 74161000 74539000 14 14 7 14 14 14 14 14 14 14 14 81146000 143270000 574680 126050000 107170000 92138000 113110000 77003000 78066000 87563000 101970000 75556000 133620000 7190700 129300000 102910000 95616000 113340000 79371000 81800000 85084000 97624000 18 18 13 18 18 18 18 18 18 18 18 15473000000 7676300000 7796400000 6384 1497 5950 34147;34148;34149;34150;34151;34152;34153;34154;34155;34156;34157;34158;34159;34160;34161;34162;34163;34164 40901;40902;40903;40904;40905;40906;40907;40908;40909;40910;40911;40912;40913;40914;40915;40916;40917;40918;40919;40920;40921;40922;40923;40924;40925;40926;40927;40928;40929;40930;40931;40932 40915 32 GEGYAKPNEGAIVEVALEGYYKDK Unmodified 2599.2806 0.28059812 1497 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 0 0 0 2 By MS/MS 5 0.816 1 1 1 3 71.116 71.14 4 2.9951E-22 22122 20211116_3434_TMUAki_TMT10x_P_F6 150.06 136.6 3717700 6753200 31139 4593600 5540200 18263000 9078400 18059000 16314000 15631000 9538300 3461600 6293400 340580 5043200 5401600 17757000 9247600 18299000 16040000 15366000 9411000 3 3 2 3 3 3 3 3 3 3 3 3717700 6753200 31139 4593600 5540200 18263000 9078400 18059000 16314000 15631000 9538300 3461600 6293400 340580 5043200 5401600 17757000 9247600 18299000 16040000 15366000 9411000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2321700000 2321700000 0 6385 1497 5951 34165;34166;34167 40933;40934;40935 40935 3 GEHGFIGCR Unmodified 1031.4607 0.46069794 1859 Q16658 FSCN1 Fascin yes yes 0 0 0 0 By MS/MS By MS/MS 3.43 1.4 1 1 1 2 2 6 1 28.947 28.867 2;3 4.551E-06 8633 20211116_3441_TMUAki_TMT10x_S_F3 158.87 122.11 1951500 3060400 56825 2906200 2745500 3065600 2060400 1495600 1419900 1565700 2279600 1817400 2855100 211410 2978100 2617800 3077900 2106000 1602000 1503000 1526300 2172400 7 7 5 7 7 7 7 7 7 7 7 1711200 2671300 55724 2510700 2532400 2822400 1771400 1300800 1257900 1354300 1993800 1593600 2492000 190840 2577300 2411500 2821900 1820700 1401000 1328300 1320500 1900500 6 6 4 6 6 6 6 6 6 6 6 240360 389160 1101.4 395540 213090 243110 289040 194790 162000 211370 285810 223810 363150 20572 400790 206290 255990 285280 200980 174760 205750 271880 1 1 1 1 1 1 1 1 1 1 1 326390000 276160000 50223000 6386 1859 5952 34168;34169;34170;34171;34172;34173;34174 40936;40937;40938;40939;40940;40941;40942 40942 7 GEHPGLSIGDVAK Unmodified 1278.6568 0.65681479 574 P09429;B2RPK0 HMGB1;HMGB1P1 High mobility group protein B1;Putative high mobility group protein B1-like 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.8 0.748 2 2 1 1 4 40.474 40.672 3 0.00056351 13494 20211116_3441_TMUAki_TMT10x_S_F3 72.681 55.314 1996900 3260400 29033 4023200 1843400 1718700 1968200 2595600 3127300 2292100 3074500 1859500 3045100 185430 4016000 1772100 1912700 2025700 2585700 3128900 2251100 2967500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1996900 3260400 29033 4023200 1843400 1718700 1968200 2595600 3127300 2292100 3074500 1859500 3045100 185430 4016000 1772100 1912700 2025700 2585700 3128900 2251100 2967500 2 2 1 2 2 2 2 2 2 2 2 165390000 0 165390000 6387 574 5953 34175;34176;34177;34178;34179 40943;40944;40945;40946;40947;40948 40944 6 GEHSIVYLK Unmodified 1044.5604 0.56039521 1497 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 0 0 0 0 By MS/MS 6 0 1 1 36.271 36.436 3 0.015334 8431 20211116_3445_TMUAki_TMT10x_S_F6 57.598 39.287 279160 362970 0 408370 227840 184600 290640 164710 160860 154880 272140 259890 338860 18210 410050 219770 201420 287510 168180 173270 151670 259080 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 279160 362970 0 408370 227840 184600 290640 164710 160860 154880 272140 259890 338860 18210 410050 219770 201420 287510 168180 173270 151670 259080 1 1 0 1 1 1 1 1 1 1 1 4443200 0 4443200 6388 1497 5954 34180 40949 40949 1 GEHSIVYLKPSYAFGSVGK Unmodified 2038.0524 0.052376507 1497 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 2.81 2.1 4 5 5 2 10 6 56.118 55.929 3;4;5 4.0856E-41 17937 20211116_3429_TMUAki_TMT10x_P_F2 213.03 189.23 195000000 318480000 3893400 342460000 261520000 307710000 214640000 185760000 204620000 199180000 220810000 181590000 297270000 18405000 347150000 249770000 312880000 219860000 195430000 209180000 193970000 212510000 23 23 15 23 23 23 23 23 23 23 23 125440000 205250000 1577700 216780000 187720000 248490000 151420000 118050000 130380000 130330000 137990000 116800000 191560000 10561000 220810000 179140000 248250000 154840000 126970000 133830000 126790000 132870000 14 14 8 14 14 14 14 14 14 14 14 69569000 113230000 2315700 125680000 73798000 59225000 63216000 67716000 74242000 68843000 82829000 64792000 105700000 7844100 126340000 70626000 64624000 65017000 68454000 75350000 67189000 79636000 9 9 7 9 9 9 9 9 9 9 9 34265000000 20010000000 14255000000 6389 1497 5955 34181;34182;34183;34184;34185;34186;34187;34188;34189;34190;34191;34192;34193;34194;34195;34196 40950;40951;40952;40953;40954;40955;40956;40957;40958;40959;40960;40961;40962;40963;40964;40965;40966;40967;40968;40969;40970;40971;40972;40973 40953 24 GEIAGPPDTPYEGGR Unmodified 1514.7001 0.70013617 1293 P61086;P61086-3 UBE2K Ubiquitin-conjugating enzyme E2 K yes no 0 0 0 0 By MS/MS 3 0 1 1 37.462 37.489 2 1.3931E-09 10940 20211116_3430_TMUAki_TMT10x_P_F3 116.03 102.76 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6390 1293 5956 34197 40974 40974 1 GEIIGVK Unmodified 714.42759 0.42759012 1777 Q15181 PPA1 Inorganic pyrophosphatase yes yes 0 0 0 0 By MS/MS By MS/MS 4.71 1.03 1 2 2 2 4 3 43.142 43.257 2 0.014114 11679 20211116_3431_TMUAki_TMT10x_P_F4 94.262 19.847 43894000 65611000 195020 64558000 56692000 62773000 47895000 42139000 45341000 41368000 52809000 40869000 61218000 3781200 65907000 54135000 63596000 48963000 43862000 46503000 40434000 50711000 8 8 4 8 8 8 8 8 8 8 8 29061000 41742000 183390 41399000 41286000 50057000 31657000 26858000 29641000 26750000 33746000 27058000 38948000 2584700 42388000 39345000 49939000 32552000 28475000 30388000 26130000 32426000 5 5 3 5 5 5 5 5 5 5 5 14833000 23869000 11633 23158000 15406000 12717000 16238000 15281000 15700000 14618000 19063000 13811000 22270000 1196400 23519000 14790000 13656000 16411000 15387000 16115000 14304000 18285000 3 3 1 3 3 3 3 3 3 3 3 1595400000 925340000 670080000 6391 1777 5957 34198;34199;34200;34201;34202;34203;34204 40975;40976;40977;40978;40979;40980;40981;40982 40976 8 GELFLRR Unmodified 889.51339 0.51338544 1696 Q14232;Q14232-2 EIF2B1 Translation initiation factor eIF-2B subunit alpha yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 35.832 35.797 3 0.0043843 8308 20211116_3428_TMUAki_TMT10x_P_F1 94.407 33.619 325160 568200 7404.8 575070 395420 334870 383420 508550 494310 467610 512340 302810 530210 34843 582590 379290 359860 392980 507070 498670 458380 493680 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 325160 568200 7404.8 575070 395420 334870 383420 508550 494310 467610 512340 302810 530210 34843 582590 379290 359860 392980 507070 498670 458380 493680 1 1 1 1 1 1 1 1 1 1 1 50567000 0 50567000 6392 1696 5958 34205;34206;34207 40983;40984;40985 40983 3 GELSTLLYNTHPYR Unmodified 1662.8366 0.83657007 2395 Q969N2;Q969N2-2;Q969N2-4;Q969N2-5 PIGT GPI transamidase component PIG-T yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 55.695 55.735 3 2.1933E-07 16441 20211116_3436_TMUAki_TMT10x_P_F8 120.29 106.38 7056400 12669000 12237 11990000 9858500 13203000 8576900 12364000 11217000 10428000 11298000 6570200 11819000 629470 12298000 9420900 13357000 8848700 12555000 11299000 10265000 10897000 2 2 1 2 2 2 2 2 2 2 2 3464600 6058700 12237 5577000 5614100 8820200 5209400 6228100 5157200 5076300 5404500 3226000 5651600 328750 5772000 5373600 8727100 5303600 6428600 5257600 5005200 5205800 1 1 1 1 1 1 1 1 1 1 1 3591800 6610500 0 6413100 4244400 4382900 3367600 6136100 6059900 5352000 5894000 3344300 6167600 300720 6526000 4047300 4629700 3545100 6126800 6041200 5259400 5690800 1 1 0 1 1 1 1 1 1 1 1 858270000 443840000 414420000 6393 2395 5959 34208;34209 40986;40987 40986 2 GELTTLIHQLQEK Unmodified 1508.8199 0.81985737 2107 Q86UP2;Q86UP2-3;Q86UP2-4;Q86UP2-2 KTN1 Kinectin yes no 0 0 0 0 By MS/MS 6 0 1 1 70.379 70.326 3 2.3569E-08 21801 20211116_3434_TMUAki_TMT10x_P_F6 107.37 82.05 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6394 2107 5960 34210 40988 40988 1 GELVGGLDIVK Unmodified 1098.6285 0.62847478 376 O76003 GLRX3 Glutaredoxin-3 yes yes 0 0 0 0 By MS/MS By MS/MS 4.86 0.833 3 2 2 4 3 64.145 64.163 2;3 3.5385E-14 20172 20211116_3431_TMUAki_TMT10x_P_F4 180.36 117.53 46464000 78369000 467980 81169000 61130000 69078000 50596000 49680000 51149000 48789000 61682000 43265000 73137000 4410600 82427000 58373000 70682000 51889000 51464000 52385000 47687000 59176000 7 7 5 7 7 7 7 7 7 7 7 21627000 35859000 155010 36670000 33442000 45416000 27422000 22866000 23304000 22571000 28060000 20137000 33463000 2035100 37483000 31919000 45221000 28003000 24378000 24057000 22056000 26921000 3 3 2 3 3 3 3 3 3 3 3 24837000 42510000 312970 44499000 27689000 23662000 23173000 26815000 27845000 26218000 33622000 23128000 39674000 2375500 44944000 26454000 25461000 23886000 27086000 28328000 25631000 32255000 4 4 3 4 4 4 4 4 4 4 4 4921300000 2550500000 2370800000 6395 376 5961 34211;34212;34213;34214;34215;34216;34217 40989;40990;40991;40992;40993;40994;40995;40996 40989 8 GEMMDLQHGSLFLR 2 Oxidation (M) 1664.7651 0.76506139 462 P00338;P00338-3;P00338-4;P00338-2;P00338-5 LDHA L-lactate dehydrogenase A chain yes no 0 0 2 0 By MS/MS 7 0 1 1 43.511 44.059 3 0.0047183 13375 20211116_3446_TMUAki_TMT10x_S_F7 60.861 54.133 4128900 7515900 66374 7405500 5883800 3468400 4018300 7572200 7554800 4990000 8211800 3844900 7012700 428750 7503800 5598700 3868400 4283000 7414500 7554300 4979900 7901300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4128900 7515900 66374 7405500 5883800 3468400 4018300 7572200 7554800 4990000 8211800 3844900 7012700 428750 7503800 5598700 3868400 4283000 7414500 7554300 4979900 7901300 1 1 1 1 1 1 1 1 1 1 1 124130000 0 124130000 6396 462 5962 34218 40997 40997 341;342 1 GENLVSMTVEGPPPK Oxidation (M) 1569.7709 0.77085827 674 P14678;P63162;P14678-2;P14678-3;P63162-2 SNRPB;SNRPN Small nuclear ribonucleoprotein-associated proteins B and B';Small nuclear ribonucleoprotein-associated protein N yes no 0 0 1 0 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 48.631 48.716 3 6.1204E-07 13005 20211116_3444_TMUAki_TMT10x_S_F5 101.53 75.404 7051900 11073000 297480 13688000 13539000 14759000 9719300 10467000 10632000 9894300 11416000 6568200 10342000 952750 13795000 12904000 14873000 10087000 10841000 10804000 9686800 10988000 3 3 3 3 3 3 3 3 3 3 3 5077800 7820300 181410 9410300 11634000 13148000 7873700 7685300 7446400 7207500 8045500 4729300 7303100 681880 9543700 11072000 13041000 8170100 8075200 7615400 7058900 7742700 2 2 2 2 2 2 2 2 2 2 2 1974100 3252400 116070 4277400 1904900 1611100 1845600 2781500 3185600 2686800 3370100 1839000 3038700 270870 4251400 1832100 1832000 1916600 2766100 3188700 2628000 3245300 1 1 1 1 1 1 1 1 1 1 1 1558200000 1187600000 370610000 6397 674 5963 34219;34220;34221;34222 40998;40999;41000;41001 41001 749 4 GENLVSMTVEGPPPK Unmodified 1553.7759 0.77594365 674 P14678;P63162;P14678-2;P14678-3;P63162-2 SNRPB;SNRPN Small nuclear ribonucleoprotein-associated proteins B and B';Small nuclear ribonucleoprotein-associated protein N yes no 0 0 0 0 By MS/MS By MS/MS 5 0.756 2 3 2 3 4 57.74 57.855 2;3 9.2715E-30 17880 20211116_3433_TMUAki_TMT10x_P_F5 208.95 145.13 17198000 28393000 214260 31354000 21257000 25892000 20336000 16189000 14755000 15857000 20602000 16014000 26505000 1670400 31696000 20371000 26496000 20503000 16939000 15462000 15501000 19693000 6 6 4 6 6 6 6 6 6 6 6 11653000 19186000 56862 21232000 15914000 21361000 15483000 10940000 9921000 10821000 13424000 10851000 17911000 1066800 21517000 15250000 21519000 15556000 11646000 10461000 10574000 12841000 4 4 2 4 4 4 4 4 4 4 4 5544600 9206700 157400 10123000 5343000 4530900 4852500 5248500 4833700 5035800 7177800 5163700 8594300 603550 10178000 5120400 4976800 4947100 5293700 5001500 4927000 6851600 2 2 2 2 2 2 2 2 2 2 2 1725900000 918950000 806920000 6398 674 5963 34223;34224;34225;34226;34227;34228;34229 41002;41003;41004;41005;41006;41007;41008;41009 41005 8 GENLVSMTVEGPPPKDTGIAR Oxidation (M) 2183.0892 0.089232298 674 P14678;P63162;P14678-2;P14678-3;P63162-2 SNRPB;SNRPN Small nuclear ribonucleoprotein-associated proteins B and B';Small nuclear ribonucleoprotein-associated protein N yes no 0 0 1 1 By MS/MS 4.67 0.471 1 2 3 47.212 47.387 3;4 4.5174E-16 12494 20211116_3444_TMUAki_TMT10x_S_F5 140.95 131.16 4356000 8600900 166300 7533000 4484200 5516700 3564900 15232000 14730000 12169000 10263000 4057100 8021500 513920 7730200 4286400 5962700 4009700 14905000 14338000 12011000 10039000 4 4 3 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4356000 8600900 166300 7533000 4484200 5516700 3564900 15232000 14730000 12169000 10263000 4057100 8021500 513920 7730200 4286400 5962700 4009700 14905000 14338000 12011000 10039000 4 4 3 4 4 4 4 4 4 4 4 607000000 0 607000000 6399 674 5964 34230;34231;34232 41010;41011;41012;41013 41011 749 4 GEPAAAAAPEAGASPVEK Unmodified 1621.7948 0.79476484 857 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate yes yes 0 0 0 0 By MS/MS By MS/MS 3.25 0.829 2 2 4 3 5 34.133 34.094 3 1.17E-23 11273 20211116_3429_TMUAki_TMT10x_P_F2 166.48 142.87 7236900 11625000 107500 12529000 19761000 15408000 9347200 10163000 11440000 6996800 10976000 6738700 10851000 835500 12761000 18690000 15401000 10091000 10503000 11530000 6963900 10602000 11 11 5 11 11 11 11 11 11 11 11 6064600 9530100 102710 10373000 18676000 14562000 8006300 9370800 10364000 6164000 9427500 5647300 8895700 742080 10586000 17644000 14459000 8752000 9693600 10408000 6152200 9123400 7 7 4 7 7 7 7 7 7 7 7 1172200 2094900 4794.8 2155400 1084500 846160 1340900 792590 1075200 832780 1548200 1091500 1955000 93412 2175000 1046300 941560 1338500 809750 1122300 811680 1478900 4 4 1 4 4 4 4 4 4 4 4 1254100000 869320000 384740000 6400 857 5965 34233;34234;34235;34236;34237;34238;34239;34240 41014;41015;41016;41017;41018;41019;41020;41021;41022;41023;41024;41025 41014 12 GEPGAAPLSAPAFSLVFPFLK Unmodified 2115.1405 0.14046323 2350 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.764 1 1 4 2 4 82.483 82.476 3;4 1.5495E-27 28074 20211116_3442_TMUAki_TMT10x_S_F4 178.88 154.32 5248800 7782100 111840 8592800 4761000 6946700 5635300 4144500 3894800 4821500 5570300 4888000 7264500 524980 8684200 4593300 7115400 5616500 4375600 4097900 4681100 5321600 4 4 3 4 4 4 4 4 4 4 4 3520400 5066100 109080 5542100 3048800 5147300 3349000 2880500 2409500 3131400 3570800 3278700 4728900 386920 5614300 2937500 5217100 3352200 3050600 2533500 3048000 3408700 2 2 2 2 2 2 2 2 2 2 2 1728400 2716000 2761.8 3050700 1712200 1799400 2286300 1264100 1485300 1690100 1999500 1609300 2535600 138060 3069900 1655800 1898300 2264300 1325000 1564400 1633100 1912900 2 2 1 2 2 2 2 2 2 2 2 1427200000 654460000 772700000 6401 2350 5966 34241;34242;34243;34244;34245;34246 41026;41027;41028;41029 41028 4 GEPGGILCFLPGWQEIK Unmodified 1899.9553 0.955305 2055 Q7L2E3;Q7L2E3-2;Q7L2E3-3 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 0 0 0 0 By MS/MS 8 0 2 2 80.577 80.567 3 2.1766E-05 26017 20211116_3447_TMUAki_TMT10x_S_F8 83.418 64.585 3811000 6260800 71821 6387100 4983500 4203400 5286100 2840600 2835600 3221000 4337100 3548900 5842400 399310 6474300 4790300 4386200 5270200 2968300 3045200 3130200 4137300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3811000 6260800 71821 6387100 4983500 4203400 5286100 2840600 2835600 3221000 4337100 3548900 5842400 399310 6474300 4790300 4386200 5270200 2968300 3045200 3130200 4137300 2 2 2 2 2 2 2 2 2 2 2 446310000 0 446310000 6402 2055 5967 34247;34248 41030;41031;41032 41030 3 GEPGRPALYFCGSIR Unmodified 1678.825 0.82495953 224 O43598;O43598-2 DNPH1 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 3 2 1 45.734 45.512 3 8.6709E-15 12157 20211116_3428_TMUAki_TMT10x_P_F1 140.22 110.92 1874000 3419700 12172 3643500 2144500 1834400 1564700 2812100 2716400 2341600 2904800 1744900 3191800 170500 3674100 2042400 2002400 1653100 2795700 2719800 2306300 2796300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1874000 3419700 12172 3643500 2144500 1834400 1564700 2812100 2716400 2341600 2904800 1744900 3191800 170500 3674100 2042400 2002400 1653100 2795700 2719800 2306300 2796300 2 2 2 2 2 2 2 2 2 2 2 240850000 0 240850000 6403 224 5968 34249;34250;34251 41033;41034;41035;41036 41033 4 GEPPHSELHPMK Oxidation (M) 1373.6398 0.63978452 3348 Q9Y6E0;Q9Y6E0-2 STK24 Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit yes no 0 0 1 0 By MS/MS 4.5 0.5 1 1 2 28.143 28.132 4 0.01931 5559 20211116_3431_TMUAki_TMT10x_P_F4 53.237 39.468 218870 289710 4084.2 269490 291920 366770 221200 203200 227260 211330 274240 203820 270250 22976 277810 278380 363960 228250 215100 232600 206060 263090 1 1 1 1 1 1 1 1 1 1 1 218870 289710 4084.2 269490 291920 366770 221200 203200 227260 211330 274240 203820 270250 22976 277810 278380 363960 228250 215100 232600 206060 263090 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10156000 10156000 0 6404 3348 5969 34252;34253 41037 41037 3296 1 GESDPAYQQYQDAANNLREDYK Unmodified 2574.1259 0.12588839 654 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 56.608 56.657 3 1.8712E-35 17574 20211116_3442_TMUAki_TMT10x_S_F4 192.94 178.01 13212000 21745000 26082 23720000 14296000 18268000 13891000 8935500 11243000 11597000 13967000 12301000 20298000 1051400 23977000 13693000 18737000 14030000 9635600 11650000 11217000 13389000 4 4 2 4 4 4 4 4 4 4 4 7482300 12042000 26082 12725000 9464700 13431000 8359700 5172300 6792600 6729100 7732500 6966900 11239000 672400 12944000 9049000 13454000 8488900 5722200 7012200 6507900 7430200 2 2 2 2 2 2 2 2 2 2 2 5729800 9703700 0 10995000 4831000 4836600 5531600 3763200 4450100 4868100 6234700 5334400 9059400 379020 11033000 4644400 5283000 5540800 3913400 4637900 4708900 5959100 2 2 0 2 2 2 2 2 2 2 2 779150000 429310000 349830000 6405 654 5970 34254;34255;34256 41038;41039;41040;41041;41042 41041 5 GESQTDIEITREEDFTR Unmodified 2024.9287 0.92869214 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 1 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 43.125 42.968 3 2.1006E-93 11334 20211116_3440_TMUAki_TMT10x_S_F2 335.41 302.11 6037500 9400500 10585 11810000 8585600 9603700 6247900 7099200 7383900 6350200 8124400 5621400 8780600 517630 11845000 8172300 9863500 6494900 7321900 7488400 6232800 7814400 5 5 2 5 5 5 5 5 5 5 5 3709300 5639400 7566.5 7088500 6627400 7860000 4648000 4396200 4539100 3926300 5045100 3453700 5267600 346340 7140600 6304700 7881800 4814800 4630500 4640400 3854000 4851200 2 2 1 2 2 2 2 2 2 2 2 2328300 3761100 3018.1 4721500 1958200 1743700 1599800 2703000 2844900 2423800 3079300 2167700 3513100 171290 4704400 1867500 1981600 1680000 2691500 2848000 2378700 2963200 3 3 1 3 3 3 3 3 3 3 3 1539100000 993610000 545450000 6406 1094 5971 34257;34258;34259;34260;34261 41043;41044;41045;41046;41047 41046 5 GETAVPGAPEALR Unmodified 1266.6568 0.65681479 14 A6NDG6 PGP Phosphoglycolate phosphatase yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 38.42 38.463 2 1.2205E-11 11221 20211116_3430_TMUAki_TMT10x_P_F3 153.66 113.46 275600 431090 6543.7 580660 880170 743000 355790 443020 593580 314350 491970 256650 402810 35703 584230 831050 740160 395670 461720 589860 312320 477730 3 3 2 3 3 3 3 3 3 3 3 275600 431090 6543.7 580660 880170 743000 355790 443020 593580 314350 491970 256650 402810 35703 584230 831050 740160 395670 461720 589860 312320 477730 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14231000 14231000 0 6407 14 5972 34262;34263 41048;41049;41050;41051 41049 4 GETPRVEEVGPYTYR Unmodified 1751.8479 0.84786304 1676 Q14108;Q14108-2 SCARB2 Lysosome membrane protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 3.8 1.17 1 1 1 2 3 2 38.814 38.747 3 1.74E-33 9866 20211116_3431_TMUAki_TMT10x_P_F4 223.76 180.22 3418100 5792800 4082.7 7548800 7002200 7947100 4417600 6640800 7363700 5433800 6124300 3182300 5411800 299280 7582900 6646900 8042100 4707300 6781700 7318400 5356700 5946200 5 5 2 5 5 5 5 5 5 5 5 2040400 3485400 0 4499000 5989200 6822800 3632900 4127500 4451000 3258900 3719600 1899500 3256100 188470 4552900 5681100 6746700 3833500 4306600 4466400 3218600 3610800 2 2 0 2 2 2 2 2 2 2 2 1377700 2307400 4082.7 3049800 1013100 1124300 784710 2513300 2912700 2174900 2404700 1282800 2155800 110810 3030000 965740 1295300 873790 2475100 2852000 2138100 2335400 3 3 2 3 3 3 3 3 3 3 3 766010000 597520000 168490000 6408 1676 5973 34264;34265;34266;34267;34268 41052;41053;41054;41055;41056 41052 5 GEVITTYCPANNEPIAR Unmodified 1903.9098 0.90981137 1098 P49419-2;P49419;P49419-4 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 47.725 47.84 3 6.3533E-22 12708 20211116_3444_TMUAki_TMT10x_S_F5 147.7 137.06 12292000 18504000 166020 23860000 19674000 22140000 14273000 15115000 16198000 14286000 16793000 11445000 17286000 1139300 23937000 18729000 22503000 14819000 15698000 16415000 13987000 16181000 8 8 5 8 8 8 8 8 8 8 8 8809300 13057000 107800 16798000 16695000 19381000 11843000 10538000 11057000 10190000 11860000 8202000 12198000 803410 16911000 15883000 19386000 12242000 11151000 11312000 9966600 11416000 6 6 3 6 6 6 6 6 6 6 6 3482500 5447100 58219 7062200 2978800 2758800 2429700 4577100 5140600 4095900 4933300 3243000 5088800 335930 7026200 2845900 3116800 2577200 4547500 5103700 4020100 4765400 2 2 2 2 2 2 2 2 2 2 2 2464000000 1569600000 894400000 6409 1098 5974 34269;34270;34271;34272;34273 41057;41058;41059;41060;41061;41062;41063;41064;41065 41065 9 GEVLGDVLQLETLKQEAATLAANNTQLQAR Unmodified 3193.6943 0.69426952 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 1 By matching By MS/MS 5.75 2.77 1 2 1 1 3 80.198 80.203 4 1.1885E-45 28337 20211116_3446_TMUAki_TMT10x_S_F7 194.25 178.45 3125200 4980300 3414.9 4988700 3766000 3274900 3977700 2364700 2527300 2674800 3642500 2909900 4647200 268650 5063100 3616300 3421500 3978800 2459500 2674100 2599600 3479300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3125200 4980300 3414.9 4988700 3766000 3274900 3977700 2364700 2527300 2674800 3642500 2909900 4647200 268650 5063100 3616300 3421500 3978800 2459500 2674100 2599600 3479300 2 2 1 2 2 2 2 2 2 2 2 2688700000 504160000 2184500000 6410 1741 5975 34274;34275;34276;34277 41066;41067 41067 2 GEVPCTVTSASPLEEATLSELK Unmodified 2317.1359 0.13590772 1068 P48047 ATP5O ATP synthase subunit O, mitochondrial yes yes 0 0 0 0 By MS/MS 3 0 1 1 75.705 75.566 3 3.9891E-35 26483 20211116_3430_TMUAki_TMT10x_P_F3 179.95 168.9 1399900 2316900 0 2190300 1277400 2389300 1677500 1291300 1322100 1331000 1653500 1303400 2161500 103400 2246300 1234200 2397100 1669700 1369500 1372300 1298300 1584800 1 1 0 1 1 1 1 1 1 1 1 1399900 2316900 0 2190300 1277400 2389300 1677500 1291300 1322100 1331000 1653500 1303400 2161500 103400 2246300 1234200 2397100 1669700 1369500 1372300 1298300 1584800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 486640000 486640000 0 6411 1068 5976 34278 41068 41068 1 GEVQVSDKER Unmodified 1145.5677 0.56766543 3267 Q9Y3A5 SBDS Ribosome maturation protein SBDS yes yes 0 0 0 1 By MS/MS 3 0 1 1 29.47 29.208 3 0.032047 8774 20211116_3441_TMUAki_TMT10x_S_F3 53.448 28.231 72849 144150 7821.3 106870 123330 111950 114130 116720 105460 93994 97950 67888 134360 14036 111730 118500 113840 115980 117760 107400 92736 94721 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72849 144150 7821.3 106870 123330 111950 114130 116720 105460 93994 97950 67888 134360 14036 111730 118500 113840 115980 117760 107400 92736 94721 1 1 1 1 1 1 1 1 1 1 1 6726000 0 6726000 6412 3267 5977 34279 41069 41069 1 GEVSVALK Unmodified 801.45962 0.45961853 1995 Q6P2E9;Q6P2E9-2 EDC4 Enhancer of mRNA-decapping protein 4 yes no 0 0 0 0 By MS/MS 4 0 1 1 42.47 42.686 2 0.012274 11803 20211116_3442_TMUAki_TMT10x_S_F4 77.923 34.799 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6413 1995 5978 34280 41070 41070 1 GEVTEMFSYEESNPKDPAAVTESK Oxidation (M) 2660.18 0.17995738 2273 Q8TCT9;Q8TCT9-5 HM13 Minor histocompatibility antigen H13 yes no 0 0 1 1 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 53.358 53.176 4 3.6624E-11 18471 20211116_3441_TMUAki_TMT10x_S_F3 105.51 93.765 12770000 22134000 125140 22471000 17573000 23320000 15605000 16569000 17159000 16573000 17553000 11890000 20654000 1136800 22913000 16801000 23552000 15980000 17187000 17402000 16186000 16921000 6 6 3 6 6 6 6 6 6 6 6 6408400 11554000 109660 11418000 11748000 17052000 9896600 8864600 9063500 8511800 9141200 5967400 10781000 668220 11742000 11222000 16840000 10110000 9415600 9259800 8327600 8815800 3 3 2 3 3 3 3 3 3 3 3 6361800 10580000 15472 11053000 5825000 6267300 5708400 7704700 8095200 8061400 8411900 5923000 9873800 468590 11171000 5579000 6712300 5870200 7771700 8142200 7858500 8104900 3 3 1 3 3 3 3 3 3 3 3 1680200000 638580000 1041600000 6414 2273 5979 34281;34282;34283;34284 41071;41072;41073;41074;41075;41076 41076 2652 6 GEVTEMFSYEESNPKDPAAVTESK Unmodified 2644.185 0.18504276 2273 Q8TCT9;Q8TCT9-5 HM13 Minor histocompatibility antigen H13 yes no 0 0 0 1 By MS/MS 3.5 0.5 1 1 2 62.445 62.361 4 6.831E-05 21159 20211116_3430_TMUAki_TMT10x_P_F3 63.883 49.423 1410500 2652400 50123 2683000 2050500 2843100 2059900 1517700 1277800 1717000 1971100 1313700 2475100 172610 2737300 1969400 2856700 2064800 1616000 1358700 1668700 1880000 1 1 1 1 1 1 1 1 1 1 1 1410500 2652400 50123 2683000 2050500 2843100 2059900 1517700 1277800 1717000 1971100 1313700 2475100 172610 2737300 1969400 2856700 2064800 1616000 1358700 1668700 1880000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1054300000 1054300000 0 6415 2273 5979 34285;34286 41077 41077 1 GEVVETVEDVIVR Unmodified 1442.7617 0.76167379 2773 Q9H0E9-2;Q9H0E9;Q9H0E9-4 BRD8 Bromodomain-containing protein 8 yes no 0 0 0 0 By MS/MS 1 0 1 1 72.012 71.884 2 2.4236E-05 24938 20211116_3439_TMUAki_TMT10x_S_F1 92.611 68.581 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6416 2773 5980 34287 41078 41078 1 GEWFLLGSPGS Unmodified 1148.5502 0.55022446 2564 Q96T76;Q96T76-9;Q96T76-8;Q96T76-5 MMS19 MMS19 nucleotide excision repair protein homolog yes no 0 0 0 0 By MS/MS 6 0 1 1 80.633 80.633 2 0.0020107 26385 20211116_3445_TMUAki_TMT10x_S_F6 79.906 56.138 1564400 2615700 0 2199000 1806900 1649000 1962300 1394800 1375500 1537700 1963300 1456600 2439100 130270 2264600 1736200 1708100 1964100 1435300 1445800 1495900 1875700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1564400 2615700 0 2199000 1806900 1649000 1962300 1394800 1375500 1537700 1963300 1456600 2439100 130270 2264600 1736200 1708100 1964100 1435300 1445800 1495900 1875700 1 1 0 1 1 1 1 1 1 1 1 293480000 0 293480000 6417 2564 5981 34288 41079 41079 1 GEYQGVFHCAVETAK Unmodified 1694.7723 0.77225526 3095 Q9UBX3;Q9UBX3-2 SLC25A10 Mitochondrial dicarboxylate carrier yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 47.48 47.625 3 8.4027E-07 12592 20211116_3444_TMUAki_TMT10x_S_F5 111.06 98.272 6002600 10119000 74350 11224000 9228500 10084000 6857300 7184800 6484300 6564500 8016800 5589200 9445900 561080 11355000 8790300 10278000 7068100 7432800 6667300 6436800 7686100 3 3 1 3 3 3 3 3 3 3 3 4120700 6857000 74350 7370400 7763700 8494800 5304400 5018300 4408100 4468100 5567300 3837100 6400300 437030 7499600 7385300 8506500 5481300 5261200 4564800 4386400 5334700 2 2 1 2 2 2 2 2 2 2 2 1882000 3261600 0 3853300 1464800 1589600 1552900 2166500 2076200 2096400 2449500 1752100 3045700 124050 3855300 1405100 1771900 1586700 2171600 2102500 2050400 2351400 1 1 0 1 1 1 1 1 1 1 1 945650000 727780000 217870000 6418 3095 5982 34289;34290;34291 41080;41081;41082 41082 3 GFAFVEFETK Unmodified 1173.5706 0.57062555 1893 Q4G0J3;Q4G0J3-3 LARP7 La-related protein 7 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 72.23 72.208 2 4.1873E-09 22495 20211116_3434_TMUAki_TMT10x_P_F6 154.56 126.54 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6419 1893 5983 34292;34293 41083;41084 41083 2 GFAFVEFSHLQDATR Unmodified 1723.8318 0.83181904 1461 P98175;P98175-2;P98175-5;P98175-3;P98175-4 RBM10 RNA-binding protein 10 yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 65.617 65.95 3 1.0566E-31 22342 20211116_3446_TMUAki_TMT10x_S_F7 218.45 197.22 10828000 17959000 123410 16864000 12673000 19738000 12583000 13956000 13302000 13277000 14097000 10082000 16753000 978030 17325000 12153000 19801000 12791000 14461000 13529000 12995000 13575000 5 5 3 5 5 5 5 5 5 5 5 6700200 11031000 60241 10198000 7678200 14811000 8226400 8598600 8255500 8085300 8710900 6238500 10290000 564820 10531000 7375700 14664000 8316700 9040600 8413500 7917700 8389000 3 3 1 3 3 3 3 3 3 3 3 4127400 6927500 63166 6666600 4995100 4927500 4357000 5357100 5046100 5192200 5386400 3843500 6463200 413210 6793500 4777300 5136700 4474200 5420100 5115500 5077800 5185500 2 2 2 2 2 2 2 2 2 2 2 1985200000 945070000 1040100000 6420 1461 5984 34294;34295;34296 41085;41086;41087;41088;41089 41089 5 GFAFVQYVNER Unmodified 1328.6513 0.65133548 545 P07910-2;P07910-4;P07910 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 0 0 0 0 By MS/MS By MS/MS 6.13 2.25 2 2 2 4 5 7 8 65.686 65.84 2;3 1.1692E-15 19247 20211116_3436_TMUAki_TMT10x_P_F8 202.44 183.83 102700000 181640000 490690 176030000 147160000 155530000 121360000 129520000 107710000 120570000 140880000 95619000 169470000 8632800 179670000 140420000 159120000 124020000 132730000 111350000 118130000 134880000 20 20 7 20 20 20 20 20 20 20 20 42152000 70784000 357090 69342000 65535000 98806000 58284000 54535000 45447000 50140000 55808000 39246000 66043000 3618400 71283000 62643000 97844000 59102000 57550000 47164000 49150000 53515000 10 10 3 10 10 10 10 10 10 10 10 60547000 110860000 133600 106680000 81620000 56723000 63072000 74982000 62259000 70435000 85075000 56372000 103430000 5014400 108380000 77775000 61278000 64921000 75179000 64183000 68978000 81363000 10 10 4 10 10 10 10 10 10 10 10 44845000000 24477000000 20369000000 6421 545 5985 34297;34298;34299;34300;34301;34302;34303;34304;34305;34306;34307;34308;34309;34310;34311 41090;41091;41092;41093;41094;41095;41096;41097;41098;41099;41100;41101;41102;41103;41104;41105;41106;41107;41108;41109;41110 41097 21 GFAFVTFDDHDSVDK Unmodified 1698.7526 0.75256567 583 P09651;P09651-2;P09651-3;Q32P51 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.894 2 1 2 3 2 64.623 64.631 3 2.0774E-31 19843 20211116_3445_TMUAki_TMT10x_S_F6 218.16 172.54 79805000 123410000 357060 156190000 84400000 128530000 79526000 81080000 78935000 85871000 89526000 74303000 115280000 6251600 156610000 80777000 131580000 80903000 84975000 80705000 83669000 86035000 10 10 5 10 10 10 10 10 10 10 10 47029000 70903000 131740 91752000 51019000 95998000 47517000 47598000 46412000 51387000 50341000 43785000 66238000 3405600 92193000 48795000 96447000 48347000 50950000 47404000 50031000 48440000 5 5 1 5 5 5 5 5 5 5 5 32776000 52506000 225320 64439000 33382000 32534000 32009000 33482000 32523000 34484000 39185000 30519000 49038000 2845900 64419000 31981000 35133000 32556000 34024000 33300000 33638000 37594000 5 5 4 5 5 5 5 5 5 5 5 5004800000 3393000000 1611800000 6422 583 5986 34312;34313;34314;34315;34316 41111;41112;41113;41114;41115;41116;41117;41118;41119;41120 41119 10 GFAFVTFDDHDTVDK Unmodified 1712.7682 0.76821573 1168;1169 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 0 0 By MS/MS By MS/MS 4.2 1.4 1 1 4 2 2 9 1 69.507 69.516 2;3 5.7596E-30 20683 20211116_3431_TMUAki_TMT10x_P_F4 202.4 159.61 61278000 103550000 797760 104360000 65838000 80383000 62859000 52744000 54725000 58592000 72655000 57060000 96623000 5610300 106050000 63084000 82747000 63665000 55197000 56666000 56983000 69532000 11 11 7 11 11 11 11 11 11 11 11 21304000 32873000 158150 32359000 23826000 40447000 24738000 19345000 17775000 19610000 22526000 19837000 30673000 1888000 33169000 22874000 40231000 24829000 20741000 18556000 19141000 21583000 8 8 5 8 8 8 8 8 8 8 8 39974000 70673000 639610 72000000 42012000 39937000 38121000 33400000 36950000 38982000 50128000 37223000 65951000 3722200 72878000 40210000 42516000 38835000 34455000 38110000 37842000 47949000 3 3 2 3 3 3 3 3 3 3 3 4766700000 3209100000 1557600000 6423 1168;1169 5987 34317;34318;34319;34320;34321;34322;34323;34324;34325;34326 41121;41122;41123;41124;41125;41126;41127;41128;41129;41130;41131;41132 41122 12 GFAFVTFESPADAK Unmodified 1485.714 0.71399532 969 P38159;Q96E39;P38159-3;O75526;Q8N7X1 RBMX;RBMXL1;RBMXL2;RBMXL3 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1;RNA-binding motif protein, X-linked-like-2;RNA-binding motif protein, X-linked-like-3 yes no 0 0 0 0 By MS/MS By MS/MS 6.16 1.87 1 1 2 4 4 4 11 11 26 12 60.741 60.781 2;3 1.0192E-60 25292 20211116_3435_TMUAki_TMT10x_P_F7 310.27 224.45 246960000 411480000 1620100 377230000 280230000 432840000 307980000 303220000 267920000 299610000 324980000 229940000 383830000 20646000 388090000 269400000 434600000 309700000 314730000 276340000 292760000 311730000 49 49 22 49 49 49 49 49 49 49 49 149850000 245010000 801680 226420000 159230000 314070000 179620000 183690000 161850000 177350000 194770000 139520000 228550000 11942000 233610000 153180000 311620000 180580000 193160000 166600000 173470000 186870000 34 34 16 34 34 34 34 34 34 34 34 97112000 166470000 818380 150810000 120990000 118770000 128360000 119530000 106070000 122260000 130210000 90423000 155270000 8703200 154480000 116220000 122990000 129120000 121570000 109740000 119290000 124860000 15 15 6 15 15 15 15 15 15 15 15 57772000000 28679000000 29093000000 6424 969 5988 34327;34328;34329;34330;34331;34332;34333;34334;34335;34336;34337;34338;34339;34340;34341;34342;34343;34344;34345;34346;34347;34348;34349;34350;34351;34352;34353;34354;34355;34356;34357;34358;34359;34360;34361;34362;34363;34364 41133;41134;41135;41136;41137;41138;41139;41140;41141;41142;41143;41144;41145;41146;41147;41148;41149;41150;41151;41152;41153;41154;41155;41156;41157;41158;41159;41160;41161;41162;41163;41164;41165;41166;41167;41168;41169;41170;41171;41172;41173;41174;41175;41176;41177;41178;41179;41180;41181 41153 49 GFAFVTFESPADAKDAAR Unmodified 1898.9163 0.91627696 969 P38159;Q96E39;P38159-3 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 yes no 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 64.757 65.189 3 2.0956E-08 22053 20211116_3446_TMUAki_TMT10x_S_F7 115.29 98.299 11502000 19697000 193200 19151000 15451000 16779000 11927000 36055000 22106000 21750000 19498000 10711000 18377000 1189000 19541000 14738000 17673000 12597000 35258000 21951000 21831000 18889000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11502000 19697000 193200 19151000 15451000 16779000 11927000 36055000 22106000 21750000 19498000 10711000 18377000 1189000 19541000 14738000 17673000 12597000 35258000 21951000 21831000 18889000 3 3 3 3 3 3 3 3 3 3 3 824830000 0 824830000 6425 969 5989 34365;34366 41182;41183;41184;41185 41184 4 GFAFVYFENVDDAK Unmodified 1620.746 0.74602373 1389 P62995;P62995-3 TRA2B Transformer-2 protein homolog beta yes no 0 0 0 0 By MS/MS By MS/MS 4 1.41 1 2 1 3 1 78.454 78.439 2 1.3948E-18 25111 20211116_3434_TMUAki_TMT10x_P_F6 163.34 146.71 5140400 8989300 31179 6666100 5933600 9409100 6815300 5974800 6820900 7218900 6963800 4786400 8379300 466340 7005600 5713400 9338900 6867100 6285300 6943900 6999100 6713300 2 2 2 2 2 2 2 2 2 2 2 2765800 4796900 15551 3820800 2980900 6425800 3459400 3352700 3858400 3829800 3814700 2575300 4472300 246810 4005700 2871200 6316400 3496400 3578200 3906200 3720800 3681200 1 1 1 1 1 1 1 1 1 1 1 2374600 4192400 15627 2845300 2952600 2983300 3355900 2622100 2962500 3389000 3149100 2211100 3906900 219530 2999900 2842200 3022600 3370800 2707100 3037700 3278300 3032100 1 1 1 1 1 1 1 1 1 1 1 1998100000 1547300000 450840000 6426 1389 5990 34367;34368;34369;34370 41186;41187;41188 41187 3 GFAFVYFER Unmodified 1134.5498 0.54983053 1650 Q13595;Q13595-4;Q13595-3;Q13595-2 TRA2A Transformer-2 protein homolog alpha yes no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 72.172 72.108 2 0.0008443 22994 20211116_3428_TMUAki_TMT10x_P_F1 110.31 90.523 6321700 11216000 79327 9060400 7468000 11678000 8253800 8094100 7409300 8171500 8807100 5886700 10457000 614100 9434500 7185200 11655000 8305000 8412700 7624200 7977500 8452600 2 2 2 2 2 2 2 2 2 2 2 3420400 6336100 51806 5157000 4221700 8688700 4811000 4453600 4253100 4574800 4989800 3185100 5907800 343080 5397100 4065900 8538500 4831900 4745500 4377400 4463000 4790600 1 1 1 1 1 1 1 1 1 1 1 2901300 4879400 27520 3903400 3246200 2989300 3442800 3640500 3156200 3596700 3817300 2701600 4549400 271020 4037400 3119300 3116400 3473100 3667200 3246900 3514500 3662000 1 1 1 1 1 1 1 1 1 1 1 784530000 412440000 372090000 6427 1650 5991 34371;34372;34373 41189;41190;41191 41189 3 GFALVGVGSEASSK Unmodified 1307.6721 0.67213051 1856 Q16630;Q16630-2;Q16630-3 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 57.095 57.441 2;3 1.2179E-29 18854 20211116_3446_TMUAki_TMT10x_S_F7 207.29 167.58 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6428 1856 5992 34374;34375;34376;34377 41192;41193;41194;41195 41195 4 GFALVGVGSEASSKK Unmodified 1435.7671 0.76709352 1856 Q16630;Q16630-2;Q16630-3 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 3 2 1 51.18 50.908 3 8.0429E-15 14347 20211116_3428_TMUAki_TMT10x_P_F1 139.6 112.27 1927500 2952000 63455 3330800 1466900 1632200 1645600 3234700 3422700 2605300 2580700 1795200 2755900 212490 3345800 1414900 1803600 1714900 3189100 3374400 2570400 2515600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1927500 2952000 63455 3330800 1466900 1632200 1645600 3234700 3422700 2605300 2580700 1795200 2755900 212490 3345800 1414900 1803600 1714900 3189100 3374400 2570400 2515600 1 1 1 1 1 1 1 1 1 1 1 229710000 0 229710000 6429 1856 5993 34378;34379;34380 41196;41197;41198 41197 3 GFAYIEFSDK Unmodified 1175.5499 0.5498901 2102 Q86U42;Q86U42-2;Q92843-2 PABPN1 Polyadenylate-binding protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 1 3 66.212 66.148 2 4.1873E-09 21203 20211116_3433_TMUAki_TMT10x_P_F5 154.56 117 26328000 40579000 62135 47238000 27387000 20590000 30287000 17513000 18010000 19998000 28167000 24514000 37890000 2204500 47322000 26333000 22550000 30190000 18035000 19219000 19428000 26857000 4 4 3 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26328000 40579000 62135 47238000 27387000 20590000 30287000 17513000 18010000 19998000 28167000 24514000 37890000 2204500 47322000 26333000 22550000 30190000 18035000 19219000 19428000 26857000 4 4 3 4 4 4 4 4 4 4 4 2111900000 0 2111900000 6430 2102 5994 34381;34382;34383;34384 41199;41200;41201;41202;41203 41199 5 GFAYIEFSDKESVR Unmodified 1646.794 0.79403655 2102 Q86U42;Q86U42-2;Q92843-2 PABPN1 Polyadenylate-binding protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 5.5 1.12 2 2 2 2 4 4 57.657 57.92 3 3.8781E-19 16752 20211116_3444_TMUAki_TMT10x_S_F5 171.21 150.55 56102000 97510000 1620100 79353000 80758000 125790000 78838000 102520000 96285000 96979000 90970000 52248000 90919000 6506400 82930000 77485000 124760000 80609000 105240000 97002000 94943000 87920000 10 10 10 10 10 10 10 10 10 10 10 30783000 51654000 557450 41721000 47046000 89664000 48126000 57169000 52040000 53110000 47833000 28666000 48161000 3299400 43981000 45171000 87656000 48881000 59644000 52621000 52037000 46273000 5 5 5 5 5 5 5 5 5 5 5 25319000 45856000 1062700 37631000 33712000 36126000 30712000 45351000 44245000 43869000 43137000 23582000 42758000 3207000 38949000 32314000 37103000 31728000 45600000 44381000 42906000 41647000 5 5 5 5 5 5 5 5 5 5 5 5956900000 3492000000 2464800000 6431 2102 5995 34385;34386;34387;34388;34389;34390;34391;34392 41204;41205;41206;41207;41208;41209;41210;41211;41212;41213;41214 41210 11 GFAYVQFEDVR Unmodified 1329.6354 0.63535107 339;2322 O75494;O75494-3;O75494-4;O75494-5;O75494-6;O75494-2;Q8WXF0 SRSF10;SRSF12 Serine/arginine-rich splicing factor 10;Serine/arginine-rich splicing factor 12 no no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 62.034 62.129 2 3.3286E-11 19350 20211116_3431_TMUAki_TMT10x_P_F4 131.12 103.03 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6432 339;2322 5996 34393;34394 41215;41216 41215 2 GFAYVQFEDVRDAEDALHNLDRK Unmodified 2707.299 0.29904215 339 O75494;O75494-3;O75494-4;O75494-5;O75494-6;O75494-2 SRSF10 Serine/arginine-rich splicing factor 10 yes no 0 0 0 2 By MS/MS By MS/MS 4.36 1.63 2 3 3 2 2 2 8 6 73.709 73.677 4;5 1.9725E-77 24685 20211116_3429_TMUAki_TMT10x_P_F2 267.57 247.85 80632000 131240000 791010 123590000 86258000 128970000 92922000 84463000 85512000 90935000 100030000 75080000 122430000 6852300 126710000 82903000 130060000 93677000 88316000 87833000 88545000 96042000 21 21 11 21 21 21 21 21 21 21 21 47181000 73353000 504680 69859000 45338000 91716000 53010000 47735000 49219000 51191000 55739000 43933000 68433000 4208800 71841000 43686000 91098000 53252000 50856000 50469000 49854000 53568000 13 13 7 13 13 13 13 13 13 13 13 33451000 57883000 286330 53734000 40920000 37256000 39912000 36728000 36293000 39743000 44286000 31147000 53995000 2643500 54864000 39217000 38958000 40425000 37460000 37364000 38691000 42474000 8 8 4 8 8 8 8 8 8 8 8 28003000000 15102000000 12901000000 6433 339 5997 34395;34396;34397;34398;34399;34400;34401;34402;34403;34404;34405;34406;34407;34408 41217;41218;41219;41220;41221;41222;41223;41224;41225;41226;41227;41228;41229;41230;41231;41232;41233;41234;41235;41236;41237 41217 21 GFCFITFK Unmodified 1018.4946 0.49462383 1675 Q14103;Q14103-3;Q14103-4;Q14103-2 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 74.949 74.866 2 0.00045684 27312 20211116_3441_TMUAki_TMT10x_S_F3 154.31 96.749 15709000 26198000 89688 24513000 16233000 23385000 19272000 14984000 14048000 17264000 18838000 14627000 24439000 1339100 25109000 15643000 23704000 19228000 15727000 14690000 16767000 18024000 3 3 2 3 3 3 3 3 3 3 3 6705300 10914000 63969 10065000 7608600 13156000 8368800 5963100 5726200 7261600 7642800 6243800 10180000 628190 10374000 7318400 13050000 8367300 6464800 6009100 7038600 7313400 1 1 1 1 1 1 1 1 1 1 1 9003500 15284000 25719 14448000 8624400 10229000 10903000 9020500 8321400 10003000 11196000 8382900 14259000 710900 14735000 8324800 10654000 10861000 9261800 8680600 9728800 10711000 2 2 1 2 2 2 2 2 2 2 2 1040000000 286250000 753750000 6434 1675 5998 34409;34410;34411 41238;41239;41240 41239 3 GFCFITFKEEEPVK Unmodified 1729.8385 0.83854391 1675 Q14103;Q14103-3;Q14103-4;Q14103-2 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes no 0 0 0 1 By MS/MS By MS/MS 6.62 1.05 3 4 5 4 9 7 67.701 67.845 2;3;4 1.0919E-29 21165 20211116_3445_TMUAki_TMT10x_S_F6 209.39 174.27 336880000 540100000 2663700 582560000 370670000 435000000 372220000 206030000 248710000 277720000 358830000 313680000 504130000 29274000 589100000 355510000 447110000 373660000 223180000 262340000 268280000 342740000 20 20 15 20 20 20 20 20 20 20 20 202630000 312500000 774980 342790000 238320000 323020000 219200000 117940000 146450000 165530000 203950000 188660000 291710000 16420000 347270000 227980000 325690000 221090000 131690000 154210000 159710000 194970000 9 9 5 9 9 9 9 9 9 9 9 134250000 227600000 1888700 239770000 132340000 111980000 153020000 88092000 102260000 112180000 154880000 125020000 212420000 12854000 241830000 127530000 121420000 152570000 91493000 108130000 108570000 147780000 11 11 10 11 11 11 11 11 11 11 11 36693000000 20361000000 16332000000 6435 1675 5999 34412;34413;34414;34415;34416;34417;34418;34419;34420;34421;34422;34423;34424;34425;34426;34427 41241;41242;41243;41244;41245;41246;41247;41248;41249;41250;41251;41252;41253;41254;41255;41256;41257;41258;41259;41260 41250 20 GFCFITFKEEEPVKK Unmodified 1857.9335 0.93350692 1675 Q14103;Q14103-3;Q14103-4;Q14103-2 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes no 0 0 0 2 By MS/MS By MS/MS 5.67 2.67 2 2 1 2 2 6 8 7 60.945 61.026 3;4;5 7.8127E-30 20631 20211116_3439_TMUAki_TMT10x_S_F1 208.51 193.09 548770000 880540000 11019000 897200000 747570000 1112900000 712130000 890140000 783300000 854270000 774720000 511040000 821700000 58266000 917340000 716560000 1115400000 726400000 915200000 793460000 835810000 747610000 24 24 20 24 24 24 24 24 24 24 24 357080000 550720000 7795000 575400000 566560000 887700000 503500000 574010000 500560000 557850000 486290000 332530000 513970000 39555000 589930000 542110000 878020000 513930000 598960000 508850000 545490000 469550000 14 14 11 14 14 14 14 14 14 14 14 191700000 329830000 3223700 321800000 181010000 225210000 208630000 316130000 282740000 296420000 288420000 178510000 307730000 18711000 327410000 174450000 237430000 212470000 316240000 284600000 290310000 278060000 10 10 9 10 10 10 10 10 10 10 10 67555000000 40775000000 26780000000 6436 1675 6000 34428;34429;34430;34431;34432;34433;34434;34435;34436;34437;34438;34439;34440;34441;34442 41261;41262;41263;41264;41265;41266;41267;41268;41269;41270;41271;41272;41273;41274;41275;41276;41277;41278;41279;41280;41281;41282;41283;41284 41275 24 GFCFITYTDEEPVK Unmodified 1704.7705 0.77052392 151;152 O14979;O14979-3;O14979-2 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like no no 0 0 0 0 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 71.895 71.761 3 3.1663E-09 23730 20211116_3442_TMUAki_TMT10x_S_F4 122.46 111.19 34747000 60921000 288080 51293000 33579000 51193000 41911000 42393000 44875000 43556000 44604000 32354000 56809000 3016400 53006000 32416000 51961000 42168000 43581000 45513000 42491000 43036000 6 6 5 6 6 6 6 6 6 6 6 13992000 24910000 145080 18795000 10750000 29246000 16101000 20566000 22798000 20430000 19230000 13029000 23221000 1249900 19762000 10451000 28954000 16259000 21345000 22773000 19959000 18661000 1 1 1 1 1 1 1 1 1 1 1 20755000 36010000 143000 32498000 22829000 21948000 25810000 21826000 22077000 23126000 25374000 19325000 33588000 1766600 33244000 21966000 23007000 25909000 22236000 22740000 22532000 24375000 5 5 4 5 5 5 5 5 5 5 5 2240500000 836750000 1403700000 6437 151;152 6001 34443;34444;34445;34446;34447 41285;41286;41287;41288;41289;41290 41287 6 GFCFITYTDEEPVKK Unmodified 1832.8655 0.86548694 151;152 O14979;O14979-3;O14979-2 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like no no 0 0 0 1 By MS/MS By MS/MS 6.09 0.793 3 4 4 6 5 62.747 62.992 3;4 3.5271E-30 19172 20211116_3445_TMUAki_TMT10x_S_F6 212.17 180.01 167770000 285820000 1307600 267260000 212630000 278890000 188440000 230940000 203450000 212160000 222350000 156210000 266630000 14683000 274140000 203280000 282320000 192880000 236660000 206990000 207980000 213910000 18 18 11 18 18 18 18 18 18 18 18 80341000 134090000 812090 124230000 112750000 186480000 104190000 110970000 97383000 103060000 102990000 74806000 125080000 7168700 128360000 107900000 184430000 105920000 116400000 99568000 100980000 99180000 9 9 6 9 9 9 9 9 9 9 9 87425000 151730000 495490 143040000 99875000 92409000 84252000 119970000 106070000 109100000 119350000 81402000 141550000 7513900 145780000 95378000 97883000 86953000 120260000 107430000 107000000 114730000 9 9 5 9 9 9 9 9 9 9 9 20284000000 10635000000 9648500000 6438 151;152 6002 34448;34449;34450;34451;34452;34453;34454;34455;34456;34457;34458 41291;41292;41293;41294;41295;41296;41297;41298;41299;41300;41301;41302;41303;41304;41305;41306;41307;41308 41303 18 GFCFLEYEDHK Unmodified 1443.6129 0.61290107 271;272;211 O60506;O60506-2;O60506-3;O60506-4;O60506-5;O43390;O43390-2;O43390-3;O43390-4 SYNCRIP;HNRNPR Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R no no 0 0 0 0 By MS/MS By MS/MS 4.79 1.76 1 2 3 4 4 5 5 12 12 54.096 54.119 2;3 3.1954E-19 18405 20211116_3442_TMUAki_TMT10x_S_F4 234.71 203.29 178660000 291270000 2284400 311710000 252210000 332280000 226980000 244000000 230130000 235670000 241450000 166360000 271860000 16436000 316860000 241230000 335250000 231660000 252290000 234380000 230510000 232570000 32 32 23 32 32 32 32 32 32 32 32 112000000 181320000 1130900 194520000 182100000 267200000 161840000 152920000 146040000 148890000 148140000 104280000 169240000 9826100 198600000 174070000 265150000 164730000 161130000 149340000 145580000 142840000 18 18 12 18 18 18 18 18 18 18 18 66660000 109950000 1153500 117180000 70108000 65085000 65145000 91083000 84084000 86780000 93305000 62075000 102620000 6610100 118260000 67165000 70102000 66925000 91166000 85039000 84931000 89723000 14 14 11 14 14 14 14 14 14 14 14 59540000000 33633000000 25907000000 6439 271;272;211 6003 34459;34460;34461;34462;34463;34464;34465;34466;34467;34468;34469;34470;34471;34472;34473;34474;34475;34476;34477;34478;34479;34480;34481;34482 41309;41310;41311;41312;41313;41314;41315;41316;41317;41318;41319;41320;41321;41322;41323;41324;41325;41326;41327;41328;41329;41330;41331;41332;41333;41334;41335;41336;41337;41338;41339;41340;41341;41342;41343 41332 35 GFCHLCDGQEACCVGLEAGINPTDHLITAYR Unmodified 3533.5585 0.55846279 557 P08559;P08559-3;P08559-4 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 63.818 63.948 4 3.5446E-27 19140 20211116_3434_TMUAki_TMT10x_P_F6 150.14 144.29 19807000 33558000 776290 34603000 22814000 27355000 22818000 20058000 18979000 19383000 24426000 18448000 31317000 2407800 35119000 21923000 28150000 23026000 20742000 19669000 18958000 23394000 5 5 5 5 5 5 5 5 5 5 5 7589700 13322000 292160 13556000 7889000 13473000 8748600 7250500 6353100 6659900 9126300 7069000 12432000 905710 13811000 7603700 13591000 8754900 7668200 6666400 6528700 8718000 2 2 2 2 2 2 2 2 2 2 2 12218000 20236000 484130 21048000 14925000 13882000 14069000 12808000 12626000 12723000 15300000 11379000 18886000 1502000 21308000 14319000 14559000 14271000 13074000 13003000 12430000 14676000 3 3 3 3 3 3 3 3 3 3 3 4701500000 1478800000 3222600000 6440 557 6004 34483;34484;34485;34486;34487 41344;41345;41346;41347;41348 41345 5 GFCLPPHCSR Unmodified 1229.5434 0.54338171 642 P12277 CKB Creatine kinase B-type yes yes 0 0 0 0 By MS/MS By MS/MS 2.62 1.32 2 2 2 1 1 3 5 33.71 33.67 3 0.00056794 7534 20211116_3428_TMUAki_TMT10x_P_F1 88.392 59.88 661270 1048500 4544.6 1176800 1005400 971250 777260 786710 812940 724130 891970 615660 978820 53915 1188400 957900 997980 801440 807320 828270 709800 858000 5 5 3 5 5 5 5 5 5 5 5 324730 497290 3616.7 575190 687510 688210 433970 349130 394710 330320 413820 302370 464320 32832 582980 652900 686510 452240 371520 403950 323390 398610 3 3 2 3 3 3 3 3 3 3 3 336530 551180 927.9 601610 317870 283040 343290 437580 418230 393800 478150 313290 514500 21083 605410 305010 311470 349210 435790 424320 386410 459400 2 2 1 2 2 2 2 2 2 2 2 92254000 68458000 23796000 6441 642 6005 34488;34489;34490;34491;34492;34493;34494;34495 41349;41350;41351;41352;41353;41354;41355 41349 7 GFCYVEFDEVDSLK Unmodified 1706.7498 0.74978848 1765 Q15056-2;Q15056 EIF4H Eukaryotic translation initiation factor 4H yes no 0 0 0 0 By MS/MS By MS/MS 3 1.37 3 4 3 4 3 9 8 77.135 77.092 2;3 5.7531E-37 25920 20211116_3442_TMUAki_TMT10x_S_F4 240.08 219.21 86923000 144670000 401670 131630000 88258000 101550000 97738000 54693000 60198000 66750000 92906000 80931000 134950000 6824200 134750000 84838000 104250000 97483000 58334000 64045000 64695000 88610000 14 14 7 14 14 14 14 14 14 14 14 38880000 62903000 173900 56819000 33557000 57074000 39066000 24547000 26384000 29108000 39225000 36199000 58672000 2885600 58398000 32297000 57396000 38946000 26736000 27851000 28240000 37441000 6 6 3 6 6 6 6 6 6 6 6 48043000 81771000 227770 74810000 54701000 44476000 58672000 30146000 33815000 37642000 53681000 44732000 76275000 3938500 76356000 52541000 46858000 58537000 31598000 36193000 36455000 51169000 8 8 4 8 8 8 8 8 8 8 8 14926000000 7338700000 7587400000 6442 1765 6006 34496;34497;34498;34499;34500;34501;34502;34503;34504;34505;34506;34507;34508;34509;34510;34511;34512 41356;41357;41358;41359;41360;41361;41362;41363;41364;41365;41366;41367;41368;41369;41370;41371 41368 16 GFDILGIKPVQR Unmodified 1341.7769 0.77687035 1218 P54136;P54136-2 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 1 By MS/MS By MS/MS 2.8 0.748 2 2 1 3 2 62.195 61.988 3 3.1165E-15 20445 20211116_3429_TMUAki_TMT10x_P_F2 158.4 136.53 29435000 48830000 186450 53298000 33841000 37096000 30788000 33352000 22969000 31465000 38301000 27408000 45580000 2584500 53815000 32377000 38707000 31148000 34043000 24253000 30808000 36473000 5 5 3 5 5 5 5 5 5 5 5 9489100 14570000 38200 16270000 15279000 20393000 12700000 10567000 7324800 9958500 11684000 8835400 13601000 889350 16539000 14587000 20300000 12850000 11221000 7841600 9751000 11137000 2 2 1 2 2 2 2 2 2 2 2 19946000 34261000 148250 37028000 18562000 16704000 18089000 22786000 15644000 21507000 26616000 18572000 31979000 1695100 37275000 17790000 18407000 18297000 22822000 16412000 21057000 25336000 3 3 2 3 3 3 3 3 3 3 3 4635600000 2096700000 2538900000 6443 1218 6007 34513;34514;34515;34516;34517 41372;41373;41374;41375;41376;41377 41372 6 GFDPNQLSVATLLFEGDREK Unmodified 2235.1172 0.11716161 61 O00116 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal yes yes 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 78.712 78.761 3 0.021968 25230 20211116_3434_TMUAki_TMT10x_P_F6 46.171 30.229 3960700 6047500 53891 6347500 3356600 6245400 4283300 3632400 3267500 3792000 4666900 3688200 5644100 370130 6452800 3245000 6310000 4264900 3829800 3418200 3696900 4458700 1 1 1 1 1 1 1 1 1 1 1 3960700 6047500 53891 6347500 3356600 6245400 4283300 3632400 3267500 3792000 4666900 3688200 5644100 370130 6452800 3245000 6310000 4264900 3829800 3418200 3696900 4458700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 311440000 311440000 0 6444 61 6008 34518;34519 41378;41379 41378 2 GFDQTINLILDESHER Unmodified 1885.917 0.91700524 443 O95777 LSM8 U6 snRNA-associated Sm-like protein LSm8 yes yes 0 0 0 0 By MS/MS By MS/MS 2.33 1.15 3 2 2 2 4 5 75.165 75.085 3 4.4854E-36 26158 20211116_3439_TMUAki_TMT10x_S_F1 213.83 194.09 24847000 41062000 623460 38906000 28446000 38586000 31133000 26894000 25512000 27381000 32150000 23139000 38307000 2652600 39838000 27378000 39066000 31265000 27948000 26436000 26722000 30809000 15 15 13 15 15 15 15 15 15 15 15 12750000 20315000 394880 19880000 12574000 24390000 15464000 13592000 12655000 13835000 16263000 11874000 18955000 1422600 20379000 12153000 24326000 15448000 14371000 13125000 13502000 15577000 7 7 7 7 7 7 7 7 7 7 7 12097000 20747000 228580 19026000 15871000 14196000 15669000 13302000 12857000 13547000 15887000 11265000 19352000 1230000 19459000 15224000 14740000 15817000 13577000 13311000 13220000 15232000 8 8 6 8 8 8 8 8 8 8 8 9965200000 5093300000 4871900000 6445 443 6009 34520;34521;34522;34523;34524;34525;34526;34527;34528 41380;41381;41382;41383;41384;41385;41386;41387;41388;41389;41390;41391;41392;41393;41394 41387 15 GFDVFNALDLMENK Unmodified 1611.7603 0.76029359 872 P30419;P30419-2;O60551 NMT1;NMT2 Glycylpeptide N-tetradecanoyltransferase 1;Glycylpeptide N-tetradecanoyltransferase 2 yes no 0 0 0 0 By MS/MS 6 0 1 1 81.099 81.087 3 0.0054912 26173 20211116_3434_TMUAki_TMT10x_P_F6 63.037 49.131 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6446 872 6010 34529 41395 41395 1 GFELTFK Unmodified 840.43815 0.43815481 976 P39656;P39656-3 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 63.023 63.309 2 0.0066731 20684 20211116_3435_TMUAki_TMT10x_P_F7 102.3 63.147 46417000 79291000 253240 63975000 65855000 90160000 60256000 69827000 65783000 67237000 67428000 43221000 73929000 4294700 66739000 63016000 89777000 61584000 71944000 66739000 65774000 64994000 4 4 3 4 4 4 4 4 4 4 4 26057000 42034000 26372 33874000 38738000 61985000 34957000 36798000 34171000 35543000 35735000 24261000 39192000 2300600 35553000 37046000 60846000 35632000 38648000 34854000 34765000 34424000 2 2 1 2 2 2 2 2 2 2 2 20360000 37257000 226870 30102000 27118000 28175000 25299000 33029000 31612000 31695000 31692000 18959000 34738000 1994100 31185000 25970000 28930000 25952000 33297000 31886000 31010000 30570000 2 2 2 2 2 2 2 2 2 2 2 2293700000 1090700000 1203000000 6447 976 6011 34530;34531;34532;34533 41396;41397;41398;41399 41397 4 GFEVVYMTEPIDEYCVQQLK Oxidation (M) 2463.1338 0.13379923 553 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 1 0 By MS/MS By MS/MS 3.75 1.54 3 7 18 7 8 7 2 25 27 75.13 75.088 2;3;4 1.5345E-58 28049 20211116_3441_TMUAki_TMT10x_S_F3 250.69 34.966 313660000 542140000 1428400 433270000 352990000 598630000 400930000 405720000 414710000 445080000 416950000 292040000 505470000 20946000 452170000 339540000 595310000 404600000 423420000 421370000 433070000 402150000 60 60 25 60 60 60 60 60 60 60 60 181730000 311740000 792060 253600000 166480000 403540000 203500000 234840000 239950000 263460000 231820000 169190000 290670000 12186000 265060000 160440000 398060000 205610000 248140000 242220000 256130000 223880000 33 33 13 33 33 33 33 33 33 33 33 131930000 230400000 636350 179670000 186510000 195100000 197430000 170880000 174770000 181620000 185130000 122840000 214800000 8759900 187110000 179100000 197260000 198990000 175280000 179150000 176940000 178270000 27 27 12 27 27 27 27 27 27 27 27 160960000000 79407000000 81557000000 6448 553 6012 34534;34535;34536;34537;34538;34539;34540;34541;34542;34543;34544;34545;34546;34547;34548;34549;34550;34551;34552;34553;34554;34555;34556;34557;34558;34559;34560;34561;34562;34563;34564;34565;34566;34567;34568;34569;34570;34571;34572;34573;34574;34575;34576;34577;34578;34579;34580;34581;34582;34583;34584;34585 41400;41401;41402;41403;41404;41405;41406;41407;41408;41409;41410;41411;41412;41413;41414;41415;41416;41417;41418;41419;41420;41421;41422;41423;41424;41425;41426;41427;41428;41429;41430;41431;41432;41433;41434;41435;41436;41437;41438;41439;41440;41441;41442;41443;41444;41445;41446;41447;41448;41449;41450;41451;41452;41453;41454;41455;41456;41457;41458;41459;41460;41461;41462;41463;41464;41465;41466;41467;41468;41469;41470 41450 508 71 GFEVVYMTEPIDEYCVQQLK Unmodified 2447.1389 0.13888461 553 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 0 By MS/MS By MS/MS 4.16 1.63 1 2 11 5 5 4 2 1 16 15 78.774 78.754 2;3;4 6.7179E-51 26580 20211116_3442_TMUAki_TMT10x_S_F4 225.79 35.329 123800000 204720000 1521600 196090000 146360000 135570000 152760000 57794000 49248000 71145000 128100000 115270000 191000000 10128000 199750000 140510000 140090000 151420000 63086000 57429000 68934000 121130000 25 25 10 25 25 25 25 25 25 25 25 61700000 95115000 617840 94217000 62101000 82902000 71753000 33795000 29240000 36847000 60953000 57451000 88749000 4770500 96011000 59801000 84049000 70962000 36931000 32733000 35861000 57818000 12 12 6 12 12 12 12 12 12 12 12 62097000 109610000 903760 101870000 84261000 52666000 81010000 23999000 20007000 34298000 67148000 57817000 102250000 5357700 103730000 80705000 56043000 80454000 26155000 24696000 33073000 63316000 13 13 4 13 13 13 13 13 13 13 13 54909000000 27222000000 27687000000 6449 553 6012 34586;34587;34588;34589;34590;34591;34592;34593;34594;34595;34596;34597;34598;34599;34600;34601;34602;34603;34604;34605;34606;34607;34608;34609;34610;34611;34612;34613;34614;34615;34616 41471;41472;41473;41474;41475;41476;41477;41478;41479;41480;41481;41482;41483;41484;41485;41486;41487;41488;41489;41490;41491;41492;41493;41494;41495;41496;41497;41498;41499;41500;41501;41502;41503 41498 33 GFFEGTIASK Unmodified 1055.5288 0.52876073 1207 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 57.594 58.222 2 8.4966E-09 18632 20211116_3435_TMUAki_TMT10x_P_F7 176.38 120.85 18402000 30150000 155000 32386000 24667000 27436000 19511000 23918000 23914000 22510000 25520000 17135000 28142000 1757800 32807000 23532000 28177000 20197000 24453000 24193000 22042000 24569000 2 2 2 2 2 2 2 2 2 2 2 8202100 13016000 95543 13772000 14395000 18815000 10502000 10338000 10544000 9779300 11445000 7637600 12148000 855780 14072000 13710000 18666000 10858000 10922000 10757000 9574000 11013000 1 1 1 1 1 1 1 1 1 1 1 10200000 17135000 59462 18614000 10272000 8621800 9008900 13579000 13370000 12730000 14075000 9497400 15994000 902060 18735000 9821300 9511100 9339200 13531000 13436000 12468000 13556000 1 1 1 1 1 1 1 1 1 1 1 1753800000 944050000 809700000 6450 1207 6013 34617;34618 41504;41505 41504 2 GFFICDQPYEPVSPYSCK Unmodified 2192.9547 0.95471265 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 0 By MS/MS By MS/MS 6.8 0.748 2 2 1 3 2 74.017 74.098 3 4.8315E-11 23795 20211116_3445_TMUAki_TMT10x_S_F6 123.36 107.6 20743000 33700000 136100 33590000 23027000 33631000 27632000 21671000 21232000 23440000 26745000 19313000 31446000 1666000 34276000 22189000 33989000 27589000 22690000 22075000 22820000 25629000 5 5 3 5 5 5 5 5 5 5 5 13561000 21191000 136100 21151000 13533000 26033000 16196000 13992000 13290000 15840000 16386000 12628000 19773000 1234800 21653000 13050000 25949000 16199000 14890000 13757000 15394000 15711000 4 4 3 4 4 4 4 4 4 4 4 7181500 12510000 0 12439000 9494300 7597700 11436000 7678700 7942100 7599500 10360000 6685100 11673000 431160 12623000 9139600 8040500 11390000 7800700 8318400 7425300 9918600 1 1 0 1 1 1 1 1 1 1 1 4271800000 2135900000 2135900000 6451 542 6014 34619;34620;34621;34622;34623 41506;41507;41508;41509;41510;41511 41510 6 GFFIKPTVFGGVQDDMR Oxidation (M) 1928.9455 0.94546859 880 P30837 ALDH1B1 Aldehyde dehydrogenase X, mitochondrial yes yes 0 0 1 1 By MS/MS By MS/MS 1.86 0.833 3 2 2 4 3 67.977 67.734 3 3.4577E-05 22817 20211116_3429_TMUAki_TMT10x_P_F2 83.418 73.63 51370000 83348000 629890 74471000 56031000 90266000 63004000 67025000 60884000 67075000 65097000 47832000 77739000 4504700 76836000 53912000 90460000 63478000 69321000 62181000 65507000 62667000 6 6 3 6 6 6 6 6 6 6 6 29673000 45554000 163690 43108000 29219000 62224000 34147000 39292000 33780000 38771000 36328000 27627000 42497000 2343500 44436000 28134000 61696000 34368000 41091000 34472000 37887000 34966000 3 3 1 3 3 3 3 3 3 3 3 21697000 37794000 466200 31363000 26812000 28041000 28857000 27733000 27103000 28305000 28769000 20205000 35242000 2161100 32400000 25779000 28765000 29110000 28230000 27709000 27621000 27701000 3 3 2 3 3 3 3 3 3 3 3 6667700000 3491800000 3175900000 6452 880 6015 34624;34625;34626;34627;34628;34629;34630 41512;41513;41514;41515;41516;41517 41514 1052 6 GFFIKPTVFGGVQDDMR Unmodified 1912.9506 0.95055397 880 P30837 ALDH1B1 Aldehyde dehydrogenase X, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 72.421 72.21 3 1.3547E-15 24551 20211116_3429_TMUAki_TMT10x_P_F2 153.06 141.62 42236000 64651000 76537 64934000 42631000 42251000 47594000 19502000 17238000 22725000 40306000 39325000 60328000 3397700 65884000 40994000 43931000 47078000 21073000 19684000 22062000 38168000 6 6 2 6 6 6 6 6 6 6 6 23792000 36003000 76537 35284000 20052000 27818000 25319000 11035000 9991100 12945000 22284000 22152000 33592000 1853000 35935000 19354000 28422000 24933000 12124000 11271000 12564000 21116000 3 3 2 3 3 3 3 3 3 3 3 18444000 28648000 0 29650000 22579000 14434000 22275000 8467000 7247000 9780200 18023000 17173000 26735000 1544700 29949000 21640000 15509000 22145000 8949100 8412600 9497700 17052000 3 3 0 3 3 3 3 3 3 3 3 2744300000 1538600000 1205700000 6453 880 6015 34631;34632;34633;34634 41518;41519;41520;41521;41522;41523 41518 6 GFFNIYHPLDPVAYR Unmodified 1807.9046 0.90459006 3359 Q9Y6Y8;Q9Y6Y8-2 SEC23IP SEC23-interacting protein yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 71.474 71.226 3 9.8044E-11 25789 20211116_3441_TMUAki_TMT10x_S_F3 139.77 135.29 11999000 20685000 244060 19217000 15141000 17639000 14672000 13755000 11947000 14134000 15717000 11174000 19295000 1185900 19684000 14515000 17980000 14823000 14192000 12407000 13788000 15045000 6 6 4 6 6 6 6 6 6 6 6 4685200 7416900 85376 6887000 5028100 9119700 5332000 4762100 3967600 5167200 5869400 4362500 6918800 404910 7096600 4829600 9054900 5350300 5073800 4163500 5029900 5603100 2 2 1 2 2 2 2 2 2 2 2 7314000 13268000 158680 12330000 10112000 8519800 9340500 8992600 7979000 8966400 9847800 6811100 12377000 781030 12588000 9685700 8925000 9472700 9118400 8243100 8758100 9442000 4 4 3 4 4 4 4 4 4 4 4 3452600000 1616500000 1836100000 6454 3359 6016 34635;34636;34637;34638 41524;41525;41526;41527;41528;41529 41528 6 GFGDGYNGYGGGPGGGNFGGSPGYGGGR Unmodified 2494.0323 0.03226278 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.85 2 5 4 1 5 7 54.575 54.861 2;3 2.3717E-188 17278 20211116_3435_TMUAki_TMT10x_P_F7 407.92 403.2 31210000 56134000 25740 54027000 36037000 50969000 35135000 34545000 36372000 36152000 39873000 29057000 52372000 1752700 55219000 34513000 51743000 35724000 36000000 37072000 35242000 38355000 16 16 3 16 16 16 16 16 16 16 16 17594000 31088000 0 28807000 22609000 38098000 23981000 18007000 19487000 19126000 20910000 16380000 29000000 744490 29688000 21702000 37787000 24114000 19356000 20072000 18633000 20127000 8 8 0 8 8 8 8 8 8 8 8 13616000 25046000 25740 25220000 13428000 12871000 11153000 16538000 16885000 17026000 18963000 12677000 23371000 1008300 25532000 12811000 13956000 11610000 16644000 17001000 16608000 18228000 8 8 3 8 8 8 8 8 8 8 8 24638000000 12065000000 12573000000 6455 772 6017 34639;34640;34641;34642;34643;34644;34645;34646;34647;34648;34649;34650 41530;41531;41532;41533;41534;41535;41536;41537;41538;41539;41540;41541;41542;41543;41544;41545;41546 41537 17 GFGDVGEAK Unmodified 878.4134 0.41339662 1685 Q14157;Q14157-1;Q14157-4;Q14157-3;Q14157-5 UBAP2L Ubiquitin-associated protein 2-like yes no 0 0 0 0 By MS/MS 3 0 1 1 40.514 40.569 2 0.00044644 12136 20211116_3430_TMUAki_TMT10x_P_F3 122.13 78.889 403000 655560 6681 611460 751080 763710 449090 330310 402930 351100 473440 375280 611540 44513 629180 712980 758880 469900 358330 414430 342040 454530 1 1 1 1 1 1 1 1 1 1 1 403000 655560 6681 611460 751080 763710 449090 330310 402930 351100 473440 375280 611540 44513 629180 712980 758880 469900 358330 414430 342040 454530 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13026000 13026000 0 6456 1685 6018 34651 41547 41547 1 GFGFGLVK Unmodified 823.45922 0.4592246 1034 P45880;P45880-2;P45880-1 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 65.092 64.867 2 0.00042628 23193 20211116_3441_TMUAki_TMT10x_S_F3 145.87 111.79 98523000 168820000 340930 147910000 150700000 215240000 118390000 198600000 152720000 145530000 153550000 91735000 157440000 8854800 153380000 143680000 214750000 122840000 201180000 153890000 144320000 148090000 8 8 5 8 8 8 8 8 8 8 8 65664000 111760000 94663 97837000 115650000 182250000 88146000 135850000 97108000 96450000 102800000 61138000 104240000 6015500 102060000 110190000 179420000 91125000 139290000 98600000 95821000 98989000 5 5 3 5 5 5 5 5 5 5 5 32860000 57051000 246270 50075000 35046000 32990000 30246000 62753000 55610000 49082000 50748000 30596000 53208000 2839300 51322000 33488000 35331000 31716000 61891000 55291000 48499000 49105000 3 3 2 3 3 3 3 3 3 3 3 6770800000 4019200000 2751600000 6457 1034 6019 34652;34653;34654;34655;34656;34657 41548;41549;41550;41551;41552;41553;41554;41555 41554 8 GFGFILFK Unmodified 927.52182 0.52182486 2601 Q99729-3;Q99729-2;Q99729;Q99729-4 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 0 0 0 0 By MS/MS By MS/MS 5 1.18 2 2 4 4 1 8 5 71.923 71.914 2 0.00042628 28887 20211116_3441_TMUAki_TMT10x_S_F3 145.87 122.31 277190000 486180000 3479500 341940000 378180000 526350000 352800000 444700000 397250000 404570000 361970000 258120000 453120000 27540000 361540000 362180000 522820000 360550000 455060000 400930000 396770000 350270000 11 11 7 10 11 10 10 11 10 11 10 123870000 207530000 785110 153030000 165270000 328520000 157630000 191610000 188880000 181950000 165440000 115340000 193440000 11548000 162590000 158320000 320770000 161260000 201440000 189950000 178100000 160320000 6 6 4 6 6 6 6 6 6 6 6 153320000 278650000 2694400 188910000 212910000 197840000 195170000 253090000 208360000 222620000 196530000 142780000 259680000 15992000 198950000 203870000 202050000 199290000 253620000 210980000 218680000 189950000 5 5 3 4 5 4 4 5 4 5 4 26122000000 13330000000 12791000000 6458 2601 6020 34658;34659;34660;34661;34662;34663;34664;34665;34666;34667;34668;34669;34670 41556;41557;41558;41559;41560;41561;41562;41563;41564;41565;41566;41567;41568;41569;41570 41565 15 GFGFITFTNPEHASVAMR Oxidation (M) 1996.9465 0.94653123 1462 P98179 RBM3 RNA-binding protein 3 yes yes 0 0 1 0 By MS/MS 4 0 1 1 61.499 61.373 3 8.5375E-07 19499 20211116_3442_TMUAki_TMT10x_S_F4 100.23 90.156 2091600 3479300 49131 3583300 2189900 2573800 2409700 3017200 2665000 2484400 2737500 1947900 3246900 220570 3633100 2108200 2694200 2440700 3029300 2702600 2448400 2638600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2091600 3479300 49131 3583300 2189900 2573800 2409700 3017200 2665000 2484400 2737500 1947900 3246900 220570 3633100 2108200 2694200 2440700 3029300 2702600 2448400 2638600 1 1 1 1 1 1 1 1 1 1 1 768240000 0 768240000 6459 1462 6021 34671 41571 41571 1963 1 GFGFVCFSSPEEATK Unmodified 1661.7396 0.73955814 634;1619 P11940;P11940-2;Q9H361;Q4VXU2;Q13310;Q13310-2;Q13310-3 PABPC1;PABPC3;PABPC1L;PABPC4 Polyadenylate-binding protein 1;Polyadenylate-binding protein 3;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 4 no no 0 0 0 0 By MS/MS By MS/MS 6.44 1.22 1 3 4 4 4 9 7 70.38 70.47 2;3 2.5008E-51 22224 20211116_3445_TMUAki_TMT10x_S_F6 286.71 265.34 138970000 222780000 821220 227110000 148210000 174560000 146920000 109250000 100650000 117140000 152600000 129390000 207890000 11592000 230600000 142080000 179610000 147660000 114610000 106260000 114080000 145600000 18 18 10 18 18 18 18 18 18 18 18 73908000 114790000 368280 117410000 71932000 114220000 75791000 56516000 51118000 60398000 77537000 68815000 107120000 6011100 119540000 69063000 115260000 75912000 60490000 54021000 58828000 73979000 10 10 6 10 10 10 10 10 10 10 10 65057000 107990000 452940 109700000 76282000 60342000 71130000 52730000 49529000 56740000 75068000 60575000 100770000 5581200 111060000 73015000 64346000 71751000 54117000 52239000 55250000 71625000 8 8 4 8 8 8 8 8 8 8 8 28280000000 13448000000 14832000000 6460 634;1619 6022 34672;34673;34674;34675;34676;34677;34678;34679;34680;34681;34682;34683;34684;34685;34686;34687 41572;41573;41574;41575;41576;41577;41578;41579;41580;41581;41582;41583;41584;41585;41586;41587;41588;41589;41590;41591;41592 41588 21 GFGFVDFNSEEDAK Unmodified 1560.6733 0.67325272 729 P19338 NCL Nucleolin yes yes 0 0 0 0 By MS/MS By MS/MS 3.4 1.53 4 6 11 5 4 5 22 13 71.479 71.391 2;3 4.3424E-85 25087 20211116_3441_TMUAki_TMT10x_S_F3 349.89 330.11 326420000 525190000 1960600 511100000 367610000 517430000 352880000 395130000 369350000 385470000 408790000 303930000 490000000 26828000 522490000 352060000 523980000 359220000 407620000 376430000 376860000 393130000 45 45 22 45 45 45 45 45 45 45 45 181910000 280350000 1496300 279540000 209190000 374100000 201360000 213320000 206890000 212240000 228450000 169380000 261600000 15862000 286650000 200410000 371660000 204830000 224970000 211000000 207330000 219710000 27 27 13 27 27 27 27 27 27 27 27 144520000 244840000 464250 231560000 158410000 143330000 151520000 181810000 162460000 173230000 180340000 134550000 228410000 10965000 235850000 151640000 152320000 154390000 182650000 165430000 169530000 173420000 18 18 9 18 18 18 18 18 18 18 18 95171000000 50842000000 44329000000 6461 729 6023 34688;34689;34690;34691;34692;34693;34694;34695;34696;34697;34698;34699;34700;34701;34702;34703;34704;34705;34706;34707;34708;34709;34710;34711;34712;34713;34714;34715;34716;34717;34718;34719;34720;34721;34722 41593;41594;41595;41596;41597;41598;41599;41600;41601;41602;41603;41604;41605;41606;41607;41608;41609;41610;41611;41612;41613;41614;41615;41616;41617;41618;41619;41620;41621;41622;41623;41624;41625;41626;41627;41628;41629;41630;41631;41632;41633;41634;41635;41636;41637;41638;41639;41640 41629 48 GFGFVLFK Unmodified 913.50617 0.5061748 1675;151;152 O14979;O14979-3;O14979-2;Q14103;Q14103-3;Q14103-4;Q14103-2 HNRNPDL;HNRNPD Heterogeneous nuclear ribonucleoprotein D-like;Heterogeneous nuclear ribonucleoprotein D0 no no 0 0 0 0 By MS/MS By MS/MS 5.51 1.07 1 2 2 33 12 15 33 32 59.861 59.886 2 0.00022219 28673 20211116_3433_TMUAki_TMT10x_P_F5 163.41 134.9 622490000 1117900000 2253700 808240000 805540000 1347300000 740150000 1041800000 752930000 945740000 723250000 579540000 1041900000 47517000 854470000 770320000 1332500000 754580000 1071700000 763440000 927610000 698610000 51 51 25 51 51 51 51 51 50 51 51 383710000 676890000 258330 502480000 510320000 988710000 529170000 560230000 566040000 523230000 499860000 357240000 630960000 29086000 532200000 489500000 967610000 536920000 590120000 571890000 512540000 484240000 28 28 15 28 28 28 28 28 28 28 28 238780000 441000000 1995300 305770000 295220000 358630000 210970000 481540000 186900000 422500000 223390000 222310000 410990000 18432000 322280000 280810000 364850000 217660000 481630000 191560000 415070000 214370000 23 23 10 23 23 23 23 23 22 23 23 51192000000 25627000000 25565000000 6462 151;152;1675 6024 34723;34724;34725;34726;34727;34728;34729;34730;34731;34732;34733;34734;34735;34736;34737;34738;34739;34740;34741;34742;34743;34744;34745;34746;34747;34748;34749;34750;34751;34752;34753;34754;34755;34756;34757;34758;34759;34760;34761;34762;34763;34764;34765;34766;34767;34768;34769;34770;34771;34772;34773;34774;34775;34776;34777;34778;34779;34780;34781;34782;34783;34784;34785;34786;34787 41641;41642;41643;41644;41645;41646;41647;41648;41649;41650;41651;41652;41653;41654;41655;41656;41657;41658;41659;41660;41661;41662;41663;41664;41665;41666;41667;41668;41669;41670;41671;41672;41673;41674;41675;41676;41677;41678;41679;41680;41681;41682;41683;41684;41685;41686;41687;41688;41689;41690;41691;41692;41693;41694;41695;41696;41697;41698;41699;41700;41701;41702;41703;41704;41705;41706 41660 66 GFGFVQFK Unmodified 928.48069 0.48068833 2983 Q9NW13 RBM28 RNA-binding protein 28 yes yes 0 0 0 0 By MS/MS 5.5 1.5 1 1 2 58.222 58.591 2;3 0.0083645 21393 20211116_3431_TMUAki_TMT10x_P_F4 83.377 60.547 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6463 2983 6025 34788;34789 41707;41708 41707 2 GFGFVSFER Unmodified 1044.5029 0.50288033 634 P11940;P11940-2;Q9H361 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 6 2.12 1 1 2 2 2 5 3 63.131 63.313 2 3.6314E-06 18953 20211116_3447_TMUAki_TMT10x_S_F8 188.76 163.84 92136000 150650000 660600 141350000 99384000 146350000 101190000 91970000 94669000 98558000 109990000 85790000 140540000 8067800 144930000 95361000 147560000 102340000 96451000 97138000 95986000 105620000 8 8 6 8 8 8 8 8 8 8 8 63284000 101840000 534350 97168000 69374000 117840000 69925000 62238000 64680000 67904000 75695000 58925000 95012000 5566400 99766000 66548000 117520000 70737000 66255000 66421000 66085000 72679000 5 5 4 5 5 5 5 5 5 5 5 28852000 48812000 126250 44179000 30011000 28518000 31263000 29732000 29989000 30654000 34290000 26865000 45530000 2501300 45163000 28813000 30046000 31606000 30196000 30717000 29900000 32946000 3 3 2 3 3 3 3 3 3 3 3 13895000000 8017000000 5877900000 6464 634 6026 34790;34791;34792;34793;34794;34795;34796;34797 41709;41710;41711;41712;41713;41714;41715 41715 7 GFGFVSFERHEDAQK Unmodified 1752.822 0.82198264 634 P11940;P11940-2;Q9H361 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 yes no 0 0 0 1 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 47 47.272 4 8.341E-30 14223 20211116_3435_TMUAki_TMT10x_P_F7 204.82 187.93 27821000 44385000 614990 51364000 49714000 54405000 28293000 54768000 51027000 39541000 42941000 25908000 41442000 3181300 51952000 47167000 55245000 30522000 55210000 50629000 39245000 41674000 10 10 9 10 10 10 10 10 10 10 10 16139000 25296000 365050 29488000 35407000 45633000 21064000 30491000 28697000 22405000 23892000 15029000 23619000 1948100 30028000 33611000 45152000 22353000 31523000 28690000 22215000 23196000 6 6 6 6 6 6 6 6 6 6 6 11682000 19089000 249940 21876000 14308000 8771600 7228400 24277000 22330000 17136000 19049000 10879000 17823000 1233200 21924000 13556000 10093000 8169700 23686000 21939000 17030000 18477000 4 4 3 4 4 4 4 4 4 4 4 3045500000 1876100000 1169400000 6465 634 6027 34798;34799;34800;34801;34802;34803 41716;41717;41718;41719;41720;41721;41722;41723;41724;41725 41720 10 GFGFVSYEK Unmodified 1032.4916 0.49164694 1619 Q13310;Q13310-2;Q13310-3 PABPC4 Polyadenylate-binding protein 4 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 58.722 58.807 2 3.0687E-05 17148 20211116_3447_TMUAki_TMT10x_S_F8 131.06 98.221 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6466 1619 6028 34804;34805 41726;41727 41727 2 GFGFVTFADPASVDK Unmodified 1556.7511 0.75110911 2435 Q96DH6;Q96DH6-2 MSI2 RNA-binding protein Musashi homolog 2 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 3 1 2 77.486 77.549 2;3 5.2025E-19 27251 20211116_3446_TMUAki_TMT10x_S_F7 165.66 140.45 16873000 28828000 62831 26061000 20963000 16891000 21015000 13131000 12989000 15177000 19509000 15711000 26890000 1507400 26645000 20105000 17689000 21065000 13602000 13796000 14739000 18618000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16873000 28828000 62831 26061000 20963000 16891000 21015000 13131000 12989000 15177000 19509000 15711000 26890000 1507400 26645000 20105000 17689000 21065000 13602000 13796000 14739000 18618000 3 3 2 3 3 3 3 3 3 3 3 1696600000 0 1696600000 6467 2435 6029 34806;34807;34808 41728;41729;41730;41731 41730 4 GFGFVTFDDHDPVDK Unmodified 1694.7577 0.75765105 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 By MS/MS By MS/MS 5.12 1.5 2 3 9 36 28 18 31 2 67 62 56.165 56.179 2;3;4 5.3812E-38 21018 20211116_3433_TMUAki_TMT10x_P_F5 253.79 222.2 1036500000 1520200000 17283000 1905100000 947970000 1351600000 987560000 715650000 760820000 868910000 1092700000 965160000 1419900000 93474000 1908100000 910510000 1395800000 992530000 755100000 795700000 842310000 1043800000 136 136 76 136 135 135 135 134 136 136 136 651700000 930060000 11349000 1190300000 592610000 1037700000 595980000 430650000 455430000 539180000 674380000 606840000 868820000 58238000 1193600000 568630000 1052900000 599900000 462640000 477240000 522120000 643770000 86 86 49 86 86 86 85 85 86 86 86 384800000 590120000 5934700 714850000 355360000 313930000 391580000 285000000 305390000 329730000 418270000 358320000 551110000 35236000 714460000 341880000 342970000 392640000 292460000 318460000 320190000 400000000 50 50 27 50 49 49 50 49 50 50 50 237690000000 120050000000 117640000000 6468 772 6030 34809;34810;34811;34812;34813;34814;34815;34816;34817;34818;34819;34820;34821;34822;34823;34824;34825;34826;34827;34828;34829;34830;34831;34832;34833;34834;34835;34836;34837;34838;34839;34840;34841;34842;34843;34844;34845;34846;34847;34848;34849;34850;34851;34852;34853;34854;34855;34856;34857;34858;34859;34860;34861;34862;34863;34864;34865;34866;34867;34868;34869;34870;34871;34872;34873;34874;34875;34876;34877;34878;34879;34880;34881;34882;34883;34884;34885;34886;34887;34888;34889;34890;34891;34892;34893;34894;34895;34896;34897;34898;34899;34900;34901;34902;34903;34904;34905;34906;34907;34908;34909;34910;34911;34912;34913;34914;34915;34916;34917;34918;34919;34920;34921;34922;34923;34924;34925;34926;34927;34928;34929;34930;34931;34932;34933;34934;34935;34936;34937 41732;41733;41734;41735;41736;41737;41738;41739;41740;41741;41742;41743;41744;41745;41746;41747;41748;41749;41750;41751;41752;41753;41754;41755;41756;41757;41758;41759;41760;41761;41762;41763;41764;41765;41766;41767;41768;41769;41770;41771;41772;41773;41774;41775;41776;41777;41778;41779;41780;41781;41782;41783;41784;41785;41786;41787;41788;41789;41790;41791;41792;41793;41794;41795;41796;41797;41798;41799;41800;41801;41802;41803;41804;41805;41806;41807;41808;41809;41810;41811;41812;41813;41814;41815;41816;41817;41818;41819;41820;41821;41822;41823;41824;41825;41826;41827;41828;41829;41830;41831;41832;41833;41834;41835;41836;41837;41838;41839;41840;41841;41842;41843;41844;41845;41846;41847;41848;41849;41850;41851;41852;41853;41854;41855;41856;41857;41858;41859;41860;41861;41862;41863;41864;41865;41866;41867;41868;41869;41870;41871;41872;41873;41874;41875;41876;41877;41878;41879;41880;41881;41882;41883;41884;41885;41886;41887 41797 156 GFGFVTFDDHDPVDKIVLQK Unmodified 2276.1477 0.14773345 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 1 By MS/MS By MS/MS 6.39 1.73 2 1 3 5 6 16 13 29 17 66.61 66.646 3;4;5 3.3424E-80 24344 20211116_3434_TMUAki_TMT10x_P_F6 298.16 271.01 431970000 950330000 3995600 335480000 1057600000 1723300000 949240000 1783200000 1372900000 1562200000 1032500000 402190000 884460000 42531000 406430000 1011200000 1671400000 981640000 1803400000 1365100000 1534900000 1006500000 60 60 35 60 60 60 60 60 59 60 60 214570000 445510000 1181400 176430000 385260000 1036800000 566580000 762300000 694640000 687670000 510290000 199750000 414700000 16173000 211860000 373710000 997020000 569190000 786670000 694530000 674690000 497960000 42 42 21 42 42 42 42 42 42 42 42 217400000 504820000 2814200 159050000 672350000 686510000 382660000 1020900000 678260000 874560000 522210000 202440000 469760000 26359000 194570000 637530000 674340000 412450000 1016700000 670580000 860170000 508580000 18 18 14 18 18 18 18 18 17 18 18 239730000000 130870000000 108850000000 6469 772 6031 34938;34939;34940;34941;34942;34943;34944;34945;34946;34947;34948;34949;34950;34951;34952;34953;34954;34955;34956;34957;34958;34959;34960;34961;34962;34963;34964;34965;34966;34967;34968;34969;34970;34971;34972;34973;34974;34975;34976;34977;34978;34979;34980;34981;34982;34983 41888;41889;41890;41891;41892;41893;41894;41895;41896;41897;41898;41899;41900;41901;41902;41903;41904;41905;41906;41907;41908;41909;41910;41911;41912;41913;41914;41915;41916;41917;41918;41919;41920;41921;41922;41923;41924;41925;41926;41927;41928;41929;41930;41931;41932;41933;41934;41935;41936;41937;41938;41939;41940;41941;41942;41943;41944;41945;41946 41893 59 GFGFVTFENEDVVEK Unmodified 1715.8043 0.80426689 2435 Q96DH6;Q96DH6-2;Q96DH6-3 MSI2 RNA-binding protein Musashi homolog 2 yes no 0 0 0 0 By MS/MS 4 1 1 1 2 76.637 76.519 2;3 0.00032454 25502 20211116_3433_TMUAki_TMT10x_P_F5 80.706 56.324 4627500 8533600 67193 6960200 5029400 10050000 5699400 4915800 5336200 5400700 5991000 4309100 7956800 451900 7257900 4843300 9932700 5734800 5271700 5467800 5254700 5759000 1 1 1 1 1 1 1 1 1 1 1 4627500 8533600 67193 6960200 5029400 10050000 5699400 4915800 5336200 5400700 5991000 4309100 7956800 451900 7257900 4843300 9932700 5734800 5271700 5467800 5254700 5759000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 329510000 329510000 0 6470 2435 6032 34984;34985 41947;41948 41948 2 GFGFVTFENIDDAK Unmodified 1558.7304 0.73037367 1673 Q14011;Q14011-2 CIRBP Cold-inducible RNA-binding protein yes no 0 0 0 0 By MS/MS By MS/MS 4.44 1.42 2 3 4 4 4 1 10 8 77.633 77.605 2;3 1.5564E-38 25130 20211116_3445_TMUAki_TMT10x_S_F6 257.13 221.91 191090000 298030000 1225500 313120000 175630000 197160000 211830000 99893000 107950000 120720000 194690000 177920000 278150000 16119000 316630000 169340000 205820000 209760000 107100000 117450000 117050000 185130000 18 18 10 18 18 18 18 18 18 18 18 88045000 132410000 304810 139120000 68372000 111350000 80219000 44883000 47351000 53430000 86515000 81979000 123580000 7011800 141040000 65855000 113660000 79733000 49244000 51000000 51830000 82246000 8 8 4 8 8 8 8 8 8 8 8 103040000 165620000 920650 173990000 107260000 85807000 131610000 55010000 60603000 67293000 108180000 95945000 154570000 9107200 175590000 103490000 92162000 130020000 57852000 66448000 65216000 102880000 10 10 6 10 10 10 10 10 10 10 10 20319000000 9341200000 10978000000 6471 1673 6033 34986;34987;34988;34989;34990;34991;34992;34993;34994;34995;34996;34997;34998;34999;35000;35001;35002;35003 41949;41950;41951;41952;41953;41954;41955;41956;41957;41958;41959;41960;41961;41962;41963;41964;41965;41966;41967 41967 19 GFGFVTFENSADADR Unmodified 1631.7216 0.72159989 204 O43251-8;O43251-6;Q9NWB1-2;O43251-7;Q9NWB1-5;Q9NWB1-4;O43251-2;O43251-5;O43251;Q9NWB1-3;O43251-9;O43251-10;Q9NWB1;O43251-4 RBFOX2;RBFOX1 RNA binding protein fox-1 homolog 2;RNA binding protein fox-1 homolog 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 67.288 67.346 2 2.1721E-42 21940 20211116_3442_TMUAki_TMT10x_S_F4 241.15 216.36 4970900 8564400 66971 8170300 5643900 6998600 6264600 5630600 5184800 5620800 6397900 4628900 7990000 480520 8345300 5431000 7171200 6288600 5793500 5364900 5490000 6134300 2 2 1 2 2 2 2 2 2 2 2 2122100 3433600 0 3194200 2276300 3934500 2647300 2265700 2075800 2252300 2500100 1975800 3203000 174650 3286600 2191700 3925100 2648100 2387400 2151800 2200300 2398600 1 1 0 1 1 1 1 1 1 1 1 2848900 5130800 66971 4976100 3367600 3064000 3617300 3364900 3109000 3368500 3897800 2653100 4787000 305870 5058800 3239300 3246100 3640400 3406100 3213100 3289700 3735700 1 1 1 1 1 1 1 1 1 1 1 864390000 521720000 342670000 6472 204 6034 35004;35005;35006;35007 41968;41969;41970;41971 41970 4 GFGFVTFSSMAEVDAAMAAR Unmodified 2063.9445 0.94448232 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 By MS/MS By MS/MS 3 2 1 1 1 1 81.398 81.473 3 0.091171 34406 20211116_3439_TMUAki_TMT10x_S_F1 30.684 20.403 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6473 772 6035 35008;35009 41972;41973 41973 2 GFGFVTFSSMAEVDAAMAARPHSIDGR Oxidation (M) 2842.3167 0.31668283 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 1 1 By MS/MS By MS/MS 6.69 2.23 2 1 5 8 10 6 74.68 74.708 3;4 2.171E-12 22506 20211116_3436_TMUAki_TMT10x_P_F8 109.44 100.04 149780000 234940000 4054900 217100000 142200000 215710000 164450000 94423000 89882000 102840000 153200000 139490000 219160000 14684000 222710000 137120000 217110000 163340000 102380000 96949000 100090000 145820000 22 22 16 22 22 22 22 22 22 22 22 128540000 201000000 3958100 184750000 118730000 190520000 139730000 79722000 73891000 83293000 129100000 119710000 187490000 13540000 189710000 114580000 191250000 138600000 86754000 80012000 81201000 122830000 15 15 13 15 15 15 15 15 15 15 15 21238000 33944000 96810 32343000 23466000 25186000 24721000 14702000 15991000 19544000 24099000 19775000 31667000 1143300 33001000 22536000 25863000 24740000 15622000 16938000 18889000 22997000 7 7 3 7 7 7 7 7 7 7 7 27116000000 16259000000 10856000000 6474 772 6036 35010;35011;35012;35013;35014;35015;35016;35017;35018;35019;35020;35021;35022;35023;35024;35025 41974;41975;41976;41977;41978;41979;41980;41981;41982;41983;41984;41985;41986;41987;41988;41989;41990;41991;41992;41993;41994;41995 41987 898;899 22 GFGFVTFSSMAEVDAAMAARPHSIDGR Unmodified 2826.3218 0.3217682 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 1 By MS/MS By MS/MS 5.5 3.24 2 1 5 5 3 81.663 81.625 4 8.9716E-42 25273 20211116_3440_TMUAki_TMT10x_S_F2 185.71 165.64 22157000 38951000 567040 32716000 26858000 30979000 29877000 24503000 22370000 23270000 26781000 20634000 36322000 2141400 33790000 25862000 31521000 29915000 25203000 23243000 22778000 25698000 10 10 7 10 10 10 10 10 10 10 10 9060700 15399000 72854 11085000 8671200 16086000 12384000 9754500 8131600 8676300 9635500 8436900 14353000 523840 11688000 8411500 15936000 12236000 10205000 8511900 8518200 9248500 6 6 3 6 6 6 6 6 6 6 6 13096000 23552000 494190 21631000 18186000 14893000 17493000 14749000 14238000 14594000 17146000 12197000 21970000 1617600 22102000 17450000 15585000 17680000 14998000 14731000 14260000 16450000 4 4 4 4 4 4 4 4 4 4 4 7960300000 4003800000 3956500000 6475 772 6036 35026;35027;35028;35029;35030;35031;35032;35033 41996;41997;41998;41999;42000;42001;42002;42003;42004;42005 42003 10 GFGFVTFSSMAEVDAAMAARPHSIDGR 2 Oxidation (M) 2858.3116 0.31159745 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 2 1 By MS/MS By MS/MS 6.83 1.12 1 1 4 6 6 13 5 64.008 64.246 3;4;5 1.799E-12 21473 20211116_3446_TMUAki_TMT10x_S_F7 105.65 98.288 58379000 97340000 548170 85816000 68696000 113940000 70834000 91165000 104540000 95682000 85507000 54356000 90786000 4442200 88781000 65922000 113820000 72781000 93975000 104200000 93262000 83075000 24 24 8 24 24 24 24 24 24 24 24 40829000 66267000 374020 59201000 46976000 89961000 48078000 61122000 69148000 64145000 58376000 38016000 61808000 2905300 61354000 45069000 89101000 49362000 63690000 69042000 62522000 56646000 16 16 5 16 16 16 16 16 16 16 16 17550000 31073000 174150 26615000 21720000 23974000 22756000 30043000 35395000 31537000 27131000 16341000 28978000 1537000 27427000 20853000 24723000 23419000 30284000 35162000 30739000 26429000 8 8 3 8 8 8 8 8 8 8 8 63092000000 43650000000 19441000000 6476 772 6036 35034;35035;35036;35037;35038;35039;35040;35041;35042;35043;35044;35045;35046;35047;35048;35049;35050;35051 42006;42007;42008;42009;42010;42011;42012;42013;42014;42015;42016;42017;42018;42019;42020;42021;42022;42023;42024;42025;42026;42027;42028 42021 898;899 23 GFGFVTYATVEEVDAAMNAR Unmodified 2146.9994 0.99935466 583 P09651;P09651-2;P09651-3 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 5 0.894 2 1 2 1 4 80.53 80.531 3 1.687E-41 26039 20211116_3444_TMUAki_TMT10x_S_F5 202.34 179.01 3604400 5827300 55009 5626900 3800700 5377900 4301200 3128500 3101000 3366100 4651800 3356400 5436700 266600 5750800 3660200 5443500 4299500 3301500 3262200 3277700 4439400 3 3 2 3 3 3 3 3 3 3 3 2275900 3582100 47116 3711500 2154500 4115900 2462700 2152700 2185200 2334000 3027000 2119500 3343000 144650 3783300 2076400 4123900 2473400 2293300 2265100 2272100 2894000 2 2 1 2 2 2 2 2 2 2 2 1328400 2245200 7892.9 1915300 1646200 1262100 1838400 975760 915730 1032000 1624800 1237000 2093800 121940 1967500 1583800 1319600 1826200 1008200 997140 1005600 1545500 1 1 1 1 1 1 1 1 1 1 1 1660000000 418290000 1241700000 6477 583 6037 35052;35053;35054;35055;35056 42029;42030;42031;42032 42031 4 GFGFVTYATVEEVDAAMNAR Oxidation (M) 2162.9943 0.99426928 583 P09651;P09651-2;P09651-3 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes no 0 0 1 0 By MS/MS By MS/MS 4.2 1.33 1 2 1 1 1 4 78.032 78.013 3 3.7153E-11 25883 20211116_3431_TMUAki_TMT10x_P_F4 115.53 103.33 11897000 20596000 245400 18839000 13483000 11479000 14828000 9351000 9464900 11237000 13222000 11079000 19212000 1212400 19233000 12976000 12100000 14805000 9671300 9996900 10897000 12639000 4 4 3 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11897000 20596000 245400 18839000 13483000 11479000 14828000 9351000 9464900 11237000 13222000 11079000 19212000 1212400 19233000 12976000 12100000 14805000 9671300 9996900 10897000 12639000 4 4 3 4 4 4 4 4 4 4 4 2824400000 0 2824400000 6478 583 6037 35057;35058;35059;35060;35061 42033;42034;42035;42036;42037;42038 42033 550 6 GFGFVTYATVEEVDAAMNARPHK Oxidation (M) 2525.2009 0.20090801 583 P09651;P09651-2;P09651-3 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes no 0 0 1 1 By MS/MS By MS/MS 6.53 1.32 1 1 3 8 17 6 24 12 54.756 54.876 3;4;5 1.6042E-20 20717 20211116_3445_TMUAki_TMT10x_S_F6 141.97 128.08 230520000 407580000 3688300 328880000 239170000 474700000 287490000 360620000 390270000 380980000 334470000 214660000 380020000 20439000 343250000 230700000 472040000 292270000 373020000 390550000 371240000 324370000 56 56 34 56 56 56 56 56 56 56 56 154500000 269560000 2566600 214330000 153220000 363450000 178040000 235310000 251070000 244910000 216390000 143870000 251330000 13380000 224780000 147650000 358180000 181550000 246000000 250990000 238790000 209820000 37 37 22 37 37 37 37 37 37 37 37 76017000 138010000 1121700 114550000 85953000 111250000 109450000 125310000 139200000 136070000 118070000 70785000 128690000 7058900 118470000 83047000 113860000 110710000 127020000 139560000 132450000 114560000 19 19 12 19 19 19 19 19 19 19 19 164910000000 81706000000 83200000000 6479 583 6038 35062;35063;35064;35065;35066;35067;35068;35069;35070;35071;35072;35073;35074;35075;35076;35077;35078;35079;35080;35081;35082;35083;35084;35085;35086;35087;35088;35089;35090;35091;35092;35093;35094;35095;35096;35097 42039;42040;42041;42042;42043;42044;42045;42046;42047;42048;42049;42050;42051;42052;42053;42054;42055;42056;42057;42058;42059;42060;42061;42062;42063;42064;42065;42066;42067;42068;42069;42070;42071;42072;42073;42074;42075;42076;42077;42078;42079;42080;42081;42082;42083;42084;42085;42086;42087;42088;42089;42090;42091;42092;42093;42094 42079 550 56 GFGFVTYATVEEVDAAMNARPHK Unmodified 2509.206 0.20599339 583 P09651;P09651-2;P09651-3 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes no 0 0 0 1 By MS/MS By MS/MS 6.66 1.98 2 1 2 2 2 9 17 21 14 82.871 82.844 3;4;5 3.0326E-77 27104 20211116_3446_TMUAki_TMT10x_S_F7 259.56 244.64 389360000 657260000 6388200 587520000 360650000 454150000 493700000 185200000 150520000 236460000 372970000 362560000 613040000 34212000 602300000 349390000 464840000 483200000 203400000 176040000 228830000 352900000 40 40 27 40 40 40 40 40 40 40 40 200350000 359990000 1643600 307370000 186150000 306960000 250340000 103580000 86560000 130340000 192160000 186540000 335710000 15773000 317270000 180060000 308170000 245500000 116380000 98974000 126190000 182100000 25 25 16 25 25 25 25 25 25 25 25 189010000 297280000 4744700 280160000 174510000 147180000 243370000 81616000 63959000 106130000 180810000 176020000 277330000 18438000 285030000 169340000 156670000 237700000 87024000 77065000 102640000 170810000 15 15 11 15 15 15 15 15 15 15 15 142630000000 75204000000 67425000000 6480 583 6038 35098;35099;35100;35101;35102;35103;35104;35105;35106;35107;35108;35109;35110;35111;35112;35113;35114;35115;35116;35117;35118;35119;35120;35121;35122;35123;35124;35125;35126;35127;35128;35129;35130;35131;35132 42095;42096;42097;42098;42099;42100;42101;42102;42103;42104;42105;42106;42107;42108;42109;42110;42111;42112;42113;42114;42115;42116;42117;42118;42119;42120;42121;42122;42123;42124;42125;42126;42127;42128;42129;42130;42131;42132;42133;42134 42127 40 GFGFVTYATVEEVDAAMNARPHKVDGR Oxidation (M) 2952.4188 0.41883971 583 P09651;P09651-2;P09651-3 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes no 0 0 1 2 By MS/MS By MS/MS 6.64 1.07 2 3 3 3 6 5 61.69 61.908 4;5 3.9074E-06 20568 20211116_3446_TMUAki_TMT10x_S_F7 78.758 71.66 55460000 91459000 375020 73698000 64167000 106430000 61950000 99550000 108160000 84778000 79840000 51637000 85275000 3328800 76928000 61456000 106250000 64385000 101120000 107010000 83408000 77895000 14 14 6 14 14 14 14 14 14 14 14 34417000 55863000 69797 44652000 36766000 80365000 41986000 60774000 65828000 50073000 46896000 32041000 52085000 2047300 46878000 35351000 79227000 43053000 62460000 65254000 49344000 45825000 8 8 1 8 8 8 8 8 8 8 8 21043000 35596000 305220 29046000 27401000 26063000 19964000 38776000 42333000 34706000 32944000 19595000 33190000 1281600 30049000 26105000 27020000 21332000 38661000 41755000 34063000 32070000 6 6 5 6 6 6 6 6 6 6 6 22393000000 12254000000 10139000000 6481 583 6039 35133;35134;35135;35136;35137;35138;35139;35140;35141;35142;35143 42135;42136;42137;42138;42139;42140;42141;42142;42143;42144;42145;42146;42147 42145 550 13 GFGFVTYATVEEVDAAMNARPHKVDGR Unmodified 2936.4239 0.42392509 583 P09651;P09651-2;P09651-3 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes no 0 0 0 2 By MS/MS By MS/MS 7.6 0.49 2 3 3 2 72.486 72.583 4;5 3.8537E-52 23348 20211116_3436_TMUAki_TMT10x_P_F8 212.01 200.38 46508000 74508000 450110 63108000 51748000 59497000 51673000 31813000 25453000 36658000 49112000 43302000 69481000 3762700 65132000 49605000 60213000 51607000 33888000 27881000 35603000 46644000 9 9 6 9 9 9 9 9 9 9 9 27969000 44365000 160050 37776000 24471000 43145000 30902000 19892000 16584000 22486000 29250000 26039000 41373000 1833000 39084000 23597000 43100000 30566000 21476000 17947000 21854000 27824000 5 5 2 5 5 5 5 5 5 5 5 18538000 30143000 290060 25331000 27277000 16352000 20771000 11921000 8869000 14173000 19862000 17263000 28109000 1929700 26048000 26008000 17113000 21041000 12411000 9933600 13749000 18820000 4 4 4 4 4 4 4 4 4 4 4 8863800000 4591300000 4272500000 6482 583 6039 35144;35145;35146;35147;35148 42148;42149;42150;42151;42152;42153;42154;42155;42156 42150 9 GFGFVTYSCVEEVDAAMCARPHK Oxidation (M) 2646.1665 0.16651312 1168;1169 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 1 1 By MS/MS By MS/MS 6.25 1.09 1 2 3 5 1 8 4 58.371 58.669 3;4;5 4.7488E-13 18803 20211116_3435_TMUAki_TMT10x_P_F7 122.44 111.38 81848000 142000000 1930900 129370000 104820000 166260000 107880000 145040000 143280000 144830000 125960000 76220000 132460000 8616200 133420000 100690000 166630000 110360000 148530000 143600000 141460000 122040000 16 16 12 16 16 16 16 16 16 16 16 41350000 71173000 1353600 61639000 57713000 109720000 58385000 74085000 71873000 71672000 63098000 38510000 66376000 4825000 64274000 55431000 108010000 59605000 77050000 72217000 70098000 61140000 8 8 7 8 8 8 8 8 8 8 8 40498000 70829000 577270 67732000 47112000 56542000 49491000 70957000 71408000 73159000 62859000 37710000 66080000 3791100 69149000 45255000 58615000 50755000 71482000 71383000 71360000 60903000 8 8 5 8 8 8 8 8 8 8 8 24058000000 12963000000 11094000000 6483 1168;1169 6040 35149;35150;35151;35152;35153;35154;35155;35156;35157;35158;35159;35160 42157;42158;42159;42160;42161;42162;42163;42164;42165;42166;42167;42168;42169;42170;42171;42172;42173 42164 1553 17 GFGFVTYSCVEEVDAAMCARPHK Unmodified 2630.1716 0.17159849 1168;1169 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 0 1 By MS/MS By MS/MS 7.25 0.829 2 2 4 4 4 68.154 68.249 4;5 5.9211E-21 23293 20211116_3446_TMUAki_TMT10x_S_F7 154.55 131.23 157660000 265530000 1485500 252920000 182240000 219110000 193070000 134390000 109310000 139080000 175400000 146790000 247720000 13333000 258400000 175010000 223400000 192680000 141060000 117210000 135640000 167160000 18 18 10 18 18 18 18 18 18 18 18 75709000 125660000 745430 121220000 88574000 141490000 92956000 65976000 52723000 70852000 86090000 70494000 117240000 6687500 124280000 85054000 141190000 92814000 71037000 56581000 68997000 82015000 8 8 4 8 8 8 8 8 8 8 8 81949000 139870000 740100 131690000 93670000 77619000 100120000 68416000 56587000 68225000 89309000 76301000 130480000 6645300 134120000 89956000 82202000 99868000 70019000 60634000 66640000 85141000 10 10 6 10 10 10 10 10 10 10 10 16804000000 8094500000 8709300000 6484 1168;1169 6040 35161;35162;35163;35164;35165;35166;35167;35168 42174;42175;42176;42177;42178;42179;42180;42181;42182;42183;42184;42185;42186;42187;42188;42189;42190;42191 42185 18 GFGFVYFQNHDAADK Unmodified 1714.774 0.77396981 1601 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 0 0 0 0 By MS/MS By MS/MS 5.62 2.1 1 1 1 2 2 4 2 6 7 59.45 59.653 2;3 2.0428E-37 19173 20211116_3435_TMUAki_TMT10x_P_F7 243.13 202.54 348870000 597740000 5622600 598690000 422560000 559220000 411640000 375220000 385420000 400770000 449390000 324870000 557750000 34287000 610110000 405170000 568000000 417300000 391550000 395520000 390360000 431530000 25 25 14 25 25 25 25 25 25 25 25 163650000 275170000 1799600 272590000 225260000 362380000 208630000 171030000 175960000 186050000 194740000 152380000 256750000 15682000 279620000 215650000 359340000 211480000 184000000 181110000 181090000 187280000 13 13 9 13 13 13 13 13 13 13 13 185220000 322570000 3823000 326100000 197300000 196840000 203010000 204190000 209460000 214710000 254650000 172480000 301000000 18605000 330490000 189520000 208660000 205820000 207550000 214410000 209270000 244260000 12 12 5 12 12 12 12 12 12 12 12 56119000000 29993000000 26126000000 6485 1601 6041 35169;35170;35171;35172;35173;35174;35175;35176;35177;35178;35179;35180;35181 42192;42193;42194;42195;42196;42197;42198;42199;42200;42201;42202;42203;42204;42205;42206;42207;42208;42209;42210;42211;42212;42213;42214;42215;42216 42201 25 GFGGAMTDAAALNILALSPPAQNLLLK Oxidation (M) 2682.4415 0.44147263 481 P04062;P04062-4;P04062-2 GBA Glucosylceramidase yes no 0 0 1 0 By MS/MS By MS/MS 3 0 3 1 2 81.152 81.102 3;4 1.2756E-17 29667 20211116_3441_TMUAki_TMT10x_S_F3 123.29 108.36 3499400 5539700 158670 5547400 4044300 5153000 5214200 3971400 3888500 4207500 4498800 3259400 5169100 445630 5652800 3916900 5247300 5186800 4104600 4035500 4099500 4320900 3 3 3 3 3 3 3 3 3 3 3 1427800 2116000 101540 2175000 1138200 2312400 1630800 1500000 1512900 1664500 1703700 1330200 1974700 208950 2216800 1109900 2329000 1624700 1571000 1551100 1618900 1637600 1 1 1 1 1 1 1 1 1 1 1 2071600 3423700 57127 3372400 2906100 2840500 3583500 2471500 2375500 2543000 2795100 1929300 3194500 236680 3436000 2807000 2918300 3562000 2533600 2484400 2480700 2683300 2 2 2 2 2 2 2 2 2 2 2 1036900000 596010000 440920000 6486 481 6042 35182;35183;35184 42217;42218;42219;42220 42218 372 4 GFGGAMTDAAALNILALSPPAQNLLLK Unmodified 2666.4466 0.44655801 481 P04062;P04062-4;P04062-2 GBA Glucosylceramidase yes no 0 0 0 0 By MS/MS By MS/MS 3.8 0.4 1 4 3 2 82.181 82.169 3;4 3.024E-52 27958 20211116_3442_TMUAki_TMT10x_S_F4 209.71 193.59 4656400 7375900 7089.3 7358900 5247500 5132000 6395400 2456000 2189500 2901200 5388300 4334600 6882500 276450 7475200 5052800 5305400 6296900 2645500 2525000 2815200 5098900 5 5 1 5 5 5 5 5 5 5 5 1995000 3057000 0 3063900 1722100 2514000 2109500 1206100 1005900 1341500 2218600 1856900 2852600 81146 3117000 1655700 2565600 2085400 1296400 1114700 1304600 2102700 2 2 0 2 2 2 2 2 2 2 2 2661400 4318900 7089.3 4295000 3525400 2618000 4285900 1249900 1183500 1559700 3169700 2477700 4029900 195300 4358200 3397000 2739700 4211500 1349100 1410300 1510600 2996200 3 3 1 3 3 3 3 3 3 3 3 1116100000 409330000 706760000 6487 481 6042 35185;35186;35187;35188;35189 42221;42222;42223;42224;42225 42223 5 GFGGIGGILR Unmodified 945.5396 0.53960019 1360 P62495;P62495-2 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 60.341 59.996 2 3.6948E-07 21217 20211116_3441_TMUAki_TMT10x_S_F3 114.19 49.32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6488 1360 6043 35190;35191 42226;42227 42227 2 GFGHIGIAVPDVYSACK Unmodified 1789.8821 0.88214006 1513 Q04760;Q04760-2 GLO1 Lactoylglutathione lyase yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 62.899 62.873 3 6.13E-11 19266 20211116_3436_TMUAki_TMT10x_P_F8 125.97 113.81 16068000 25950000 389480 28114000 20670000 25242000 16955000 19342000 18223000 20923000 22396000 14964000 24222000 1759600 28485000 19749000 25759000 17431000 20011000 18632000 20369000 21476000 4 4 4 4 4 4 4 4 4 4 4 6238500 10193000 71829 11028000 9898100 16169000 8544700 8384700 7974000 8616300 8535500 5809200 9514600 635410 11268000 9461100 15980000 8720400 8924800 8157000 8405600 8216500 2 2 2 2 2 2 2 2 2 2 2 9829700 15756000 317650 17086000 10772000 9072700 8409800 10957000 10249000 12307000 13861000 9154800 14707000 1124200 17216000 10288000 9779300 8710900 11086000 10475000 11964000 13259000 2 2 2 2 2 2 2 2 2 2 2 3488600000 2313800000 1174700000 6489 1513 6044 35192;35193;35194;35195 42228;42229;42230;42231;42232 42229 5 GFGLLGSIFGK Unmodified 1094.6124 0.61243078 2175 Q8N0U8 VKORC1L1 Vitamin K epoxide reductase complex subunit 1-like protein 1 yes yes 0 0 0 0 By matching By MS/MS 6 0 2 1 1 80.16 80.154 2 0.00034285 26197 20211116_3445_TMUAki_TMT10x_S_F6 93.701 64.354 4018500 7016800 130850 6771700 3896900 4369900 5538200 2630600 2672300 3082900 4439000 3742600 6546500 453400 6889600 3785700 4560900 5443100 2775900 2906700 2992300 4227400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4018500 7016800 130850 6771700 3896900 4369900 5538200 2630600 2672300 3082900 4439000 3742600 6546500 453400 6889600 3785700 4560900 5443100 2775900 2906700 2992300 4227400 1 1 1 1 1 1 1 1 1 1 1 432050000 180870000 251170000 6490 2175 6045 35196;35197 42233 42233 1 GFGSDKEAILDIITSR Unmodified 1720.8996 0.89956426 548 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 77.728 77.706 3 9.6265E-16 25481 20211116_3436_TMUAki_TMT10x_P_F8 157.98 136.11 11848000 22696000 29879 12253000 19645000 28603000 20252000 20880000 19329000 21558000 19998000 11032000 21139000 1083400 13482000 18851000 27956000 20482000 21639000 19729000 21027000 19270000 2 2 1 2 2 2 2 2 2 2 2 6676600 12598000 29879 6354600 9090800 19311000 12263000 12435000 11847000 12991000 11544000 6216800 11732000 615200 7117400 8798300 18719000 12261000 13007000 12060000 12665000 11145000 1 1 1 1 1 1 1 1 1 1 1 5171700 10098000 0 5898500 10554000 9291300 7988700 8444300 7482600 8566900 8453700 4815100 9407200 468180 6364900 10053000 9237100 8221800 8632000 7668900 8361800 8124900 1 1 0 1 1 1 1 1 1 1 1 2034400000 1130100000 904240000 6491 548 6046 35198;35199 42234;42235 42234 2 GFGSEEGSR Unmodified 924.39372 0.39372381 3327 Q9Y5S9 RBM8A RNA-binding protein 8A yes yes 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 28.838 28.761 2 0.0049864 7416 20211116_3439_TMUAki_TMT10x_S_F1 74.486 44.411 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6492 3327 6047 35200;35201 42236;42237 42237 2 GFGTDEQAIVDVVANR Unmodified 1689.8322 0.83221298 739 P20073;P20073-2 ANXA7 Annexin A7 yes no 0 0 0 0 By MS/MS By MS/MS 3 0.953 4 4 2 1 5 6 70.801 70.587 2;3 1.8841E-89 25557 20211116_3441_TMUAki_TMT10x_S_F3 309.68 291.62 54529000 91608000 934050 83144000 64343000 84016000 63003000 56507000 52652000 60504000 67863000 50775000 85448000 5016100 85432000 61684000 84918000 63656000 58961000 54557000 58927000 64994000 14 14 9 14 14 14 14 14 14 14 14 29358000 47524000 531840 42121000 31257000 54578000 32340000 29953000 27405000 32175000 34546000 27337000 44325000 2617900 43538000 30008000 54279000 32595000 31764000 28349000 31332000 33105000 6 6 4 6 6 6 6 6 6 6 6 25171000 44084000 402200 41023000 33086000 29438000 30662000 26554000 25247000 28329000 33316000 23438000 41124000 2398300 41894000 31677000 30639000 31061000 27197000 26208000 27595000 31889000 8 8 5 8 8 8 8 8 8 8 8 4322200000 1854300000 2467900000 6493 739 6048 35202;35203;35204;35205;35206;35207;35208;35209;35210;35211;35212 42238;42239;42240;42241;42242;42243;42244;42245;42246;42247;42248;42249;42250;42251;42252;42253;42254 42251 17 GFHQEVFLGK Unmodified 1160.5978 0.59784335 2638 Q9BRK5;Q9BRK5-4;Q9BRK5-3;Q9BRK5-6 SDF4 45 kDa calcium-binding protein yes no 0 0 0 0 By MS/MS 7 0 1 1 46.77 47.261 3 0.00014832 14727 20211116_3446_TMUAki_TMT10x_S_F7 110.53 85.679 1657000 2733500 46175 3040700 1632200 1361100 1447600 1691000 1820400 1656600 2104000 1543200 2551800 180070 3055200 1563200 1497600 1489500 1701600 1845700 1619300 2020900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1657000 2733500 46175 3040700 1632200 1361100 1447600 1691000 1820400 1656600 2104000 1543200 2551800 180070 3055200 1563200 1497600 1489500 1701600 1845700 1619300 2020900 1 1 1 1 1 1 1 1 1 1 1 197060000 0 197060000 6494 2638 6049 35213 42255 42255 1 GFHQVPFAPIVFIER Unmodified 1755.9461 0.94606094 1065 P47897;P47897-2 QARS Glutamine--tRNA ligase yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 73.658 73.486 3 2.4852E-14 25671 20211116_3430_TMUAki_TMT10x_P_F3 146.84 128.01 11933000 21510000 96704 18632000 13321000 18252000 16561000 13731000 12874000 14016000 16574000 11111000 20060000 798730 19206000 12855000 18515000 16515000 14197000 13390000 13677000 15873000 7 7 2 7 7 7 7 7 7 7 7 5461500 8722900 96704 7949600 5202000 10392000 6465700 5927300 5388100 6005700 6594800 5085800 8136500 524520 8201000 5024600 10336000 6459000 6254200 5571400 5862200 6324500 3 3 2 3 3 3 3 3 3 3 3 6471900 12787000 0 10683000 8119400 7859700 10095000 7803300 7485700 8010200 9978800 6025400 11924000 274210 11005000 7830200 8179800 10056000 7942900 7818100 7814700 9549000 4 4 0 4 4 4 4 4 4 4 4 6040500000 3156400000 2884100000 6495 1065 6050 35214;35215;35216;35217 42256;42257;42258;42259;42260;42261;42262 42258 7 GFHTTIDIGVK Unmodified 1186.6346 0.63462279 1802 Q15417;Q15417-3;Q15417-2 CNN3 Calponin-3 yes no 0 0 0 0 By MS/MS 7 0 1 1 48.472 48.955 3 9.399E-08 15413 20211116_3446_TMUAki_TMT10x_S_F7 116.77 80.181 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6496 1802 6051 35218 42263 42263 1 GFIAGIDLK Unmodified 932.53312 0.53311783 2677 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 0 0 0 0 By MS/MS 7 0 1 1 65.792 66.401 2 0.00017264 22017 20211116_3435_TMUAki_TMT10x_P_F7 100.02 67.177 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6497 2677 6052 35219 42264 42264 1 GFIGPGIDVPAPDMSTGER Oxidation (M) 1930.9095 0.90947702 463 P00367;P00367-3;P00367-2 GLUD1 Glutamate dehydrogenase 1, mitochondrial yes no 0 0 1 0 By MS/MS 4.5 0.5 1 1 2 62.253 62.388 3 0.017873 19456 20211116_3431_TMUAki_TMT10x_P_F4 42.226 37.424 7576200 11745000 99807 11476000 9584800 14646000 8712800 7994000 8160800 7614300 8631500 7054300 10958000 674080 11774000 9169600 14575000 8866300 8452100 8343000 7452100 8311900 2 2 1 2 2 2 2 2 2 2 2 7576200 11745000 99807 11476000 9584800 14646000 8712800 7994000 8160800 7614300 8631500 7054300 10958000 674080 11774000 9169600 14575000 8866300 8452100 8343000 7452100 8311900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1070900000 1070900000 0 6498 463 6053 35220;35221 42265;42266 42265 346 2 GFIYVHKPPVHIR Unmodified 1561.8882 0.88815213 1550 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 0 1 By MS/MS By MS/MS 5.25 1.09 3 5 3 1 8 4 38.48 38.562 3;4;5 7.9297E-15 10584 20211116_3433_TMUAki_TMT10x_P_F5 172.8 159.38 20094000 32199000 679900 40228000 56748000 53272000 30614000 31675000 31790000 28157000 29171000 18714000 30075000 2766400 40667000 53793000 52980000 32456000 33189000 32197000 27644000 28222000 14 14 12 14 14 14 14 14 14 14 14 17642000 27935000 563090 35321000 54464000 50818000 28237000 28039000 28152000 24776000 25315000 16430000 26094000 2456700 35743000 51595000 50302000 30011000 29560000 28543000 24332000 24508000 10 10 8 10 10 10 10 10 10 10 10 2451800 4264000 116810 4907300 2283200 2454300 2377500 3635600 3638500 3380500 3856900 2283700 3981200 309770 4924100 2198700 2678100 2445700 3629100 3654100 3312100 3713800 4 4 4 4 4 4 4 4 4 4 4 5373100000 4241700000 1131500000 6499 1550 6054 35222;35223;35224;35225;35226;35227;35228;35229;35230;35231;35232;35233 42267;42268;42269;42270;42271;42272;42273;42274;42275;42276;42277;42278;42279;42280 42274 14 GFKDQIYDIFQK Unmodified 1500.7613 0.76127986 1277 P60842;P60842-2 EIF4A1 Eukaryotic initiation factor 4A-I yes no 0 0 0 1 By MS/MS By MS/MS 3.6 3.06 8 5 2 5 10 10 72.406 72.362 2;3;4 2.273E-14 23068 20211116_3428_TMUAki_TMT10x_P_F1 152.85 113.84 527220000 815740000 7262800 806640000 441190000 754530000 565990000 441970000 581010000 521050000 565970000 490930000 761140000 46478000 822770000 426430000 764850000 568050000 467500000 589890000 505630000 546430000 22 22 11 22 22 22 22 22 22 22 22 304370000 453880000 5458800 460190000 266860000 494370000 311220000 255950000 335200000 303350000 328530000 283420000 423540000 28149000 469540000 257220000 496160000 314110000 273680000 339730000 294320000 317120000 11 11 5 11 11 11 11 11 11 11 11 222860000 361860000 1803900 346450000 174330000 260160000 254770000 186020000 245810000 217700000 237440000 207510000 337600000 18329000 353230000 169210000 268690000 253940000 193820000 250160000 211310000 229310000 11 11 6 11 11 11 11 11 11 11 11 65111000000 35525000000 29586000000 6500 1277 6055 35234;35235;35236;35237;35238;35239;35240;35241;35242;35243;35244;35245;35246;35247;35248;35249;35250;35251;35252;35253 42281;42282;42283;42284;42285;42286;42287;42288;42289;42290;42291;42292;42293;42294;42295;42296;42297;42298;42299;42300;42301;42302;42303;42304;42305;42306 42284 26 GFKDQIYEIFQK Unmodified 1514.7769 0.77692993 1697 Q14240;Q14240-2 EIF4A2 Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed yes no 0 0 0 1 By MS/MS 2 0 1 1 74.445 74.301 3 2.5405E-08 25455 20211116_3429_TMUAki_TMT10x_P_F2 121.24 81.578 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6501 1697 6056 35254 42307 42307 1 GFKEQIYDVYR Unmodified 1416.7038 0.70376498 973 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 51.52 51.878 3 4.7599E-07 16592 20211116_3446_TMUAki_TMT10x_S_F7 136.27 119.73 10794000 21881000 128830 15668000 21021000 31020000 17195000 45149000 42095000 33134000 27052000 10051000 20394000 1140800 16653000 20066000 30971000 18413000 44831000 41201000 32855000 26562000 3 3 2 3 3 3 3 3 3 3 3 4179900 8202700 93090 5588100 10821000 20410000 10850000 18121000 17063000 12838000 10378000 3892600 7644200 526310 6107100 10382000 19827000 11197000 18382000 16850000 12756000 10219000 1 1 1 1 1 1 1 1 1 1 1 6614300 13678000 35742 10080000 10200000 10609000 6345300 27028000 25031000 20296000 16674000 6158700 12750000 614490 10545000 9684700 11144000 7216400 26450000 24351000 20099000 16343000 2 2 1 2 2 2 2 2 2 2 2 1609900000 741830000 868030000 6502 973 6057 35255;35256;35257;35258 42308;42309;42310;42311 42310 4 GFKFDETEQALANER Unmodified 1753.8271 0.8271276 2049 Q7L014 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 0 0 0 1 By MS/MS By MS/MS 3.29 1.03 2 2 2 1 3 4 52.428 52.409 3 3.2722E-19 18111 20211116_3441_TMUAki_TMT10x_S_F3 163.02 142.91 14089000 24098000 93879 24603000 22516000 31771000 18664000 27083000 22128000 21246000 21187000 13119000 22488000 1359500 25170000 21497000 31818000 19240000 27598000 22326000 20990000 20467000 3 3 1 3 3 3 3 3 3 3 3 10937000 18514000 93879 18896000 19248000 28636000 16346000 21124000 17287000 16528000 16285000 10184000 17277000 1097200 19396000 18387000 28403000 16761000 21719000 17510000 16332000 15741000 2 2 1 2 2 2 2 2 2 2 2 3152100 5584100 0 5706500 3268000 3134700 2317500 5959900 4840800 4717400 4901300 2934900 5211000 262320 5774500 3109600 3415600 2478500 5879800 4816400 4658500 4726300 1 1 0 1 1 1 1 1 1 1 1 3744100000 2027000000 1717100000 6503 2049 6058 35259;35260;35261;35262;35263;35264;35265 42312;42313;42314;42315;42316 42316 5 GFKFDETEQALANERK Unmodified 1881.9221 0.92209062 2049 Q7L014 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 0 0 0 2 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 49.08 49.232 4 5.376E-11 13104 20211116_3434_TMUAki_TMT10x_P_F6 138.05 119.27 28965000 48595000 369350 54411000 43111000 46185000 29574000 34550000 43726000 39248000 40022000 26972000 45366000 2908900 54974000 41017000 47296000 31144000 35856000 43733000 38138000 38723000 6 6 3 6 6 6 6 6 6 6 6 14863000 24157000 173360 26965000 31006000 35575000 20263000 17516000 22339000 18831000 19203000 13840000 22552000 1595500 27440000 29468000 35305000 21180000 18760000 22524000 18337000 18622000 3 3 1 3 3 3 3 3 3 3 3 14103000 24438000 195990 27445000 12106000 10610000 9311100 17034000 21387000 20417000 20819000 13132000 22815000 1313300 27534000 11548000 11992000 9964600 17096000 21209000 19801000 20101000 3 3 2 3 3 3 3 3 3 3 3 2074400000 1160800000 913560000 6504 2049 6059 35266;35267;35268;35269 42317;42318;42319;42320;42321;42322 42318 6 GFLEDLAPPER Unmodified 1242.6245 0.62445203 1194 P52948;P52948-6;P52948-5;P52948-2 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 63.65 63.56 2 4.3708E-07 21634 20211116_3430_TMUAki_TMT10x_P_F3 111.06 82.888 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6505 1194 6060 35270;35271 42323;42324 42323 2 GFLFGPSLAQELGLGCVLIR Unmodified 2146.1609 0.1608811 541 P07741;P07741-2 APRT Adenine phosphoribosyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 82.557 82.557 3 0.0026724 27737 20211116_3431_TMUAki_TMT10x_P_F4 60.253 45.64 953810 1590900 0 1610000 1257800 1015400 1226000 932690 991490 1003700 1335600 887910 1484500 61122 1632300 1203800 1069300 1238000 954590 1031100 977350 1277800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 953810 1590900 0 1610000 1257800 1015400 1226000 932690 991490 1003700 1335600 887910 1484500 61122 1632300 1203800 1069300 1238000 954590 1031100 977350 1277800 1 1 0 1 1 1 1 1 1 1 1 170950000 0 170950000 6506 541 6061 35272;35273;35274 42325;42326 42325 2 GFLGCFPDIIGTHK Unmodified 1560.7759 0.77588407 3329 Q9Y5X1 SNX9 Sorting nexin-9 yes yes 0 0 0 0 By MS/MS 2 0 1 1 73.303 73.119 3 5.1142E-10 25013 20211116_3429_TMUAki_TMT10x_P_F2 138.02 125.46 3592000 5117900 0 4700000 3225600 6382400 3914700 3238200 2992000 4106200 3908900 3343300 4774000 135950 4849400 3100000 6327500 3906300 3477100 3116700 3974600 3742400 1 1 0 1 1 1 1 1 1 1 1 3592000 5117900 0 4700000 3225600 6382400 3914700 3238200 2992000 4106200 3908900 3343300 4774000 135950 4849400 3100000 6327500 3906300 3477100 3116700 3974600 3742400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 715240000 715240000 0 6507 3329 6062 35275 42327 42327 1 GFLIDGYPR Unmodified 1036.5342 0.53418046 474 P00568;Q9Y6K8;Q9Y6K8-2;Q9Y6K8-3 AK1;AK5 Adenylate kinase isoenzyme 1;Adenylate kinase isoenzyme 5 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 57.39 57.736 2 0.0011121 18980 20211116_3446_TMUAki_TMT10x_S_F7 102.51 72.329 55619000 88674000 416770 92575000 71229000 93933000 61960000 66057000 64572000 67406000 71289000 51787000 82756000 4817500 94187000 68064000 94983000 63415000 68609000 65815000 65777000 68562000 8 8 4 8 8 8 8 8 8 8 8 34049000 53317000 223600 55384000 45945000 72314000 40981000 39522000 38704000 41001000 43186000 31703000 49758000 3075500 56608000 43935000 71888000 41758000 41883000 39633000 39983000 41521000 5 5 3 5 5 5 5 5 5 5 5 21571000 35356000 193180 37191000 25284000 21619000 20980000 26534000 25868000 26406000 28103000 20084000 32998000 1742000 37579000 24128000 23095000 21657000 26727000 26181000 25794000 27040000 3 3 1 3 3 3 3 3 3 3 3 3167700000 1732100000 1435600000 6508 474 6063 35276;35277;35278;35279 42328;42329;42330;42331;42332;42333;42334;42335 42335 8 GFLKEEDLTEK Unmodified 1307.6609 0.66089712 598 P35520;P0DN79;P35520-2 CBS Cystathionine beta-synthase yes no 0 0 0 1 By MS/MS By MS/MS 5 0.707 1 2 1 2 2 50.833 51.004 3 0.0015462 14780 20211116_3431_TMUAki_TMT10x_P_F4 77.894 53.908 17998000 29403000 222530 33624000 38617000 43050000 23706000 27955000 25805000 25537000 25815000 16759000 27452000 1942200 34145000 36664000 42936000 24891000 29112000 26161000 25041000 24903000 3 3 2 3 3 3 3 3 3 3 3 13595000 22296000 188740 25017000 35135000 38853000 19664000 20236000 22024000 19621000 19902000 12660000 20815000 1558500 25537000 33308000 38309000 20828000 21495000 22227000 19189000 19265000 2 2 1 2 2 2 2 2 2 2 2 4403100 7106500 33786 8606900 3482500 4196900 4041900 7719300 3781300 5915900 5913100 4100000 6636700 383640 8608600 3355300 4626700 4062600 7616700 3933900 5852100 5638100 1 1 1 1 1 1 1 1 1 1 1 1261200000 860760000 400430000 6509 598 6064 35280;35281;35282;35283 42336;42337;42338 42336 3 GFLNSSELSGLPAGPDREGSLKDQLALAIGK Unmodified 3139.6513 0.65134207 1033 P43897 TSFM Elongation factor Ts, mitochondrial yes yes 0 0 0 2 By MS/MS By matching 8 0 2 1 1 77.679 77.657 4 1.6857E-10 25448 20211116_3436_TMUAki_TMT10x_P_F8 97.691 90.739 8601300 14478000 74367 10168000 6591400 14062000 10239000 8199000 9239100 8984900 10383000 8009200 13493000 754270 10736000 6416300 13954000 10165000 8655600 9483500 8742800 9980400 1 1 1 1 1 1 1 1 1 1 1 8601300 14478000 74367 10168000 6591400 14062000 10239000 8199000 9239100 8984900 10383000 8009200 13493000 754270 10736000 6416300 13954000 10165000 8655600 9483500 8742800 9980400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1561500000 1119200000 442270000 6510 1033 6065 35284;35285 42339 42339 1 GFLSGPMGSGMR 2 Oxidation (M) 1227.5376 0.53762763 3065 Q9P2K5;Q9P2K5-2;Q9P2K5-3 MYEF2 Myelin expression factor 2 yes no 0 0 2 0 By MS/MS By MS/MS 1 0 2 1 1 38.241 38.198 2 0.031498 11190 20211116_3439_TMUAki_TMT10x_S_F1 49.536 37.31 645240 1135700 1338.9 1229100 1078100 1093800 804590 1031700 1076900 870100 1031900 600750 1060100 56208 1245300 1026600 1121200 838860 1047200 1082000 856440 996830 2 2 1 2 2 2 2 2 2 2 2 326220 541430 0 588910 813060 844040 488750 480320 504780 416190 489080 303710 505390 29268 601250 771150 835940 513210 504800 512270 409110 472290 1 1 0 1 1 1 1 1 1 1 1 319010 594250 1338.9 640220 265030 249760 315840 551340 572110 453910 542820 297040 554670 26940 644040 255490 285300 325650 542430 569770 447320 524540 1 1 1 1 1 1 1 1 1 1 1 67680000 40322000 27358000 6511 3065 6066 35286;35287 42340 42340 3112;3113 1 GFLWDEGFHQLVVQR Unmodified 1829.9213 0.92130275 1660 Q13724;Q13724-2 MOGS Mannosyl-oligosaccharide glucosidase yes no 0 0 0 0 By MS/MS 8 0 1 1 72.123 71.95 3 1.7282E-06 22575 20211116_3447_TMUAki_TMT10x_S_F8 92.265 78.107 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6512 1660 6067 35288 42341 42341 1 GFMTAHGQPDQPR Oxidation (M) 1456.6517 0.65174619 2767 Q9H089 LSG1 Large subunit GTPase 1 homolog yes yes 0 0 1 0 By MS/MS 4.5 0.5 1 1 2 27.446 27.435 3 0.015881 4839 20211116_3431_TMUAki_TMT10x_P_F4 52.071 42.639 24581 34873 0 38624 26677 32030 18236 20110 31736 57256 29850 22887 32555 0 39039 25367 32769 19357 22160 31629 54389 28853 1 1 0 1 1 1 1 1 1 1 1 24581 34873 0 38624 26677 32030 18236 20110 31736 57256 29850 22887 32555 0 39039 25367 32769 19357 22160 31629 54389 28853 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8909400 8909400 0 6513 2767 6068 35289;35290 42342 42342 2936 1 GFNEGLWEIDNNPK Unmodified 1631.758 0.7579854 336 O75475;O75475-2;O75475-3 PSIP1 PC4 and SFRS1-interacting protein yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 67.272 67.285 3 6.5077E-05 21952 20211116_3442_TMUAki_TMT10x_S_F4 93.243 80.263 25871000 44464000 382370 46729000 30623000 33950000 31542000 21264000 19622000 23059000 32027000 24091000 41498000 2567800 47320000 29409000 35089000 31577000 22313000 20924000 22447000 30511000 5 5 5 5 5 5 5 5 5 5 5 10489000 18847000 223970 19835000 13844000 20790000 15456000 9336300 8447800 10322000 12844000 9767500 17590000 1125300 20179000 13328000 20863000 15376000 10100000 9056900 10041000 12254000 2 2 2 2 2 2 2 2 2 2 2 15382000 25617000 158400 26894000 16779000 13160000 16086000 11927000 11174000 12737000 19183000 14324000 23909000 1442500 27141000 16081000 14226000 16201000 12213000 11867000 12406000 18257000 3 3 3 3 3 3 3 3 3 3 3 2842200000 1526800000 1315400000 6514 336 6069 35291;35292;35293;35294 42343;42344;42345;42346;42347 42345 5 GFNKVVLK Unmodified 903.55419 0.55418762 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 1 By MS/MS 3 0 1 1 45.832 45.492 3 0.06929 15286 20211116_3441_TMUAki_TMT10x_S_F3 50.607 1.8126 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6515 1433 6070 35295 42348 42348 1 GFNLPYQDAR Unmodified 1179.5673 0.5672715 2241 Q8NE71;Q8NE71-2 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 51.022 51.169 2 1.9045E-08 14297 20211116_3445_TMUAki_TMT10x_S_F6 170.5 147.07 6341100 10716000 35227 11294000 10643000 12963000 7809600 10852000 11305000 9476500 10475000 5904400 10001000 611950 11506000 10135000 13056000 8178000 11099000 11318000 9311900 10130000 3 3 2 3 3 3 3 3 3 3 3 4101600 6884100 35227 6878800 8710200 11045000 6480100 6898900 6801100 5892300 6420100 3819200 6423500 437430 7080200 8297800 10902000 6699600 7193500 6891400 5796200 6205000 2 2 2 2 2 2 2 2 2 2 2 2239500 3831800 0 4415600 1932700 1918500 1329500 3953400 4503700 3584200 4054700 2085100 3577700 174530 4426100 1837600 2154200 1478400 3905800 4426900 3515800 3925300 1 1 0 1 1 1 1 1 1 1 1 742650000 450190000 292460000 6516 2241 6071 35296;35297;35298;35299 42349;42350;42351;42352 42352 4 GFNPAQPLNIR Unmodified 1225.6568 0.65675521 1562 Q12769 NUP160 Nuclear pore complex protein Nup160 yes yes 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 53.487 53.329 2 4.1481E-07 15345 20211116_3428_TMUAki_TMT10x_P_F1 111.82 93.09 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6517 1562 6072 35300;35301;35302 42353;42354;42355 42353 3 GFPGYMYTDLATIYER Oxidation (M) 1911.8713 0.8713006 753 P21281;P15313 ATP6V1B2;ATP6V1B1 V-type proton ATPase subunit B, brain isoform;V-type proton ATPase subunit B, kidney isoform yes no 0 0 1 0 By MS/MS 7 0 1 1 75.131 75.287 2 9.1863E-06 25831 20211116_3435_TMUAki_TMT10x_P_F7 91.752 73.08 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6518 753 6073 35303 42356 42356 870 1 GFPTDATLDDIK Unmodified 1291.6296 0.62959699 509 P05455 SSB Lupus La protein yes yes 0 0 0 0 By MS/MS 4 0 1 1 62.92 63.031 2 2.8671E-15 19717 20211116_3431_TMUAki_TMT10x_P_F4 164.33 126.86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6519 509 6074 35304 42357 42357 1 GFPTIYFSPANK Unmodified 1340.6765 0.6764876 868 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 By MS/MS By MS/MS 2.9 0.831 1 5 9 5 14 6 72.442 72.282 2;3 7.2219E-12 25143 20211116_3441_TMUAki_TMT10x_S_F3 172.26 148.11 156320000 257090000 1860200 236250000 181030000 231760000 175760000 153080000 154650000 158160000 191000000 145550000 239810000 13747000 242420000 173480000 234610000 177910000 159760000 159540000 154250000 183120000 23 23 13 23 23 23 23 23 23 23 23 76288000 123130000 1200100 112230000 82498000 145470000 88670000 73870000 73787000 77074000 90311000 71039000 114860000 7336500 115760000 79319000 144530000 89159000 78815000 76304000 75142000 86608000 14 14 9 14 14 14 14 14 14 14 14 80029000 133960000 660090 124020000 98532000 86290000 87094000 79210000 80863000 81082000 100690000 74511000 124960000 6410700 126660000 94158000 90075000 88748000 80948000 83240000 79112000 96514000 9 9 4 9 9 9 9 9 9 9 9 18196000000 9700500000 8495200000 6520 868 6075 35305;35306;35307;35308;35309;35310;35311;35312;35313;35314;35315;35316;35317;35318;35319;35320;35321;35322;35323;35324 42358;42359;42360;42361;42362;42363;42364;42365;42366;42367;42368;42369;42370;42371;42372;42373;42374;42375;42376;42377;42378;42379;42380;42381;42382;42383;42384 42380 27 GFPTIYFSPANKK Unmodified 1468.7715 0.77145062 868 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 59.987 60.043 3 2.7118E-05 19026 20211116_3442_TMUAki_TMT10x_S_F4 100.55 88.338 53904000 89640000 599440 101960000 71960000 74075000 54187000 78135000 69469000 63605000 74919000 50193000 83689000 5077300 102730000 68575000 77274000 56367000 78802000 70198000 62718000 72103000 5 5 3 5 5 5 5 5 5 5 5 17877000 28927000 0 32232000 29635000 41048000 23254000 24975000 22633000 20454000 22644000 16644000 27005000 1495900 32780000 28245000 40912000 23902000 26068000 23053000 20163000 21844000 1 1 0 1 1 1 1 1 1 1 1 36027000 60712000 599440 69727000 42325000 33027000 30934000 53160000 46836000 43150000 52274000 33549000 56685000 3581400 69947000 40329000 36362000 32465000 52734000 47145000 42555000 50259000 4 4 3 4 4 4 4 4 4 4 4 4794500000 2288500000 2506000000 6521 868 6076 35325;35326;35327;35328 42385;42386;42387;42388;42389;42390 42388 6 GFQEVVTPNIFNSR Unmodified 1606.8104 0.81035532 819 P26639;P26639-2 TARS Threonine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 5.75 2.8 3 1 4 4 6 6 67.31 67.444 2;3 1.6756E-43 20641 20211116_3447_TMUAki_TMT10x_S_F8 272.25 222.84 58706000 98233000 462680 91814000 69307000 91939000 68167000 64089000 60792000 64631000 72900000 54663000 91638000 5196600 94121000 66438000 93028000 68976000 66584000 62598000 63100000 69949000 17 17 10 17 17 17 17 17 17 17 17 30675000 49306000 256630 45656000 33090000 60977000 36451000 31933000 30550000 31953000 35290000 28562000 45995000 2636800 47063000 31816000 60521000 36615000 33933000 31506000 31207000 33896000 9 9 4 9 9 9 9 9 9 9 9 28031000 48927000 206040 46158000 36217000 30962000 31716000 32157000 30242000 32678000 37611000 26100000 45644000 2559900 47057000 34622000 32507000 32361000 32650000 31092000 31894000 36053000 8 8 6 8 8 8 8 8 8 8 8 14162000000 7430300000 6731700000 6522 819 6077 35329;35330;35331;35332;35333;35334;35335;35336;35337;35338;35339;35340 42391;42392;42393;42394;42395;42396;42397;42398;42399;42400;42401;42402;42403;42404;42405;42406;42407;42408 42408 18 GFQFVSSSLPDICYR Unmodified 1774.8349 0.83485551 1361 P62633;P62633-2;P62633-4;P62633-8;P62633-5;P62633-6 CNBP Cellular nucleic acid-binding protein yes no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 75.235 75.192 3 0.012782 26287 20211116_3439_TMUAki_TMT10x_S_F1 49.959 29.578 31533000 51328000 147500 55696000 35827000 31001000 37937000 11824000 12134000 15331000 31337000 29359000 47911000 2507400 56142000 34395000 32674000 37572000 13095000 14154000 14828000 29635000 3 3 1 3 3 3 3 3 3 3 3 12637000 21637000 147500 21773000 16325000 18257000 16741000 5375200 5273500 6227000 12502000 11768000 20190000 1236800 22150000 15672000 18526000 16604000 6140800 6123200 6046600 11836000 1 1 1 1 1 1 1 1 1 1 1 18895000 29691000 0 33923000 19502000 12745000 21196000 6449100 6860000 9103600 18835000 17591000 27721000 1270600 33991000 18723000 14148000 20967000 6954200 8031100 8781700 17799000 2 2 0 2 2 2 2 2 2 2 2 1056900000 374670000 682190000 6523 1361 6078 35341;35342;35343 42409;42410;42411 42410 3 GFQQILAGEYDHLPEQAFYMVGPIEEAVAK Oxidation (M) 3365.6278 0.62782943 518 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 4.83 1.07 1 4 4 2 1 6 6 79.247 79.243 3;4 1.3033E-57 26755 20211116_3442_TMUAki_TMT10x_S_F4 215.07 203.55 25316000 45746000 197770 37561000 31175000 48796000 33749000 35081000 36640000 37469000 33773000 23571000 42655000 2048100 39065000 29956000 48709000 34188000 36432000 37047000 36496000 32668000 11 11 4 11 11 11 11 11 11 11 11 14473000 25041000 58523 21608000 14063000 31902000 16456000 20513000 20800000 20527000 17741000 13475000 23353000 1120300 22440000 13540000 31608000 16701000 21432000 20862000 20048000 17209000 6 6 1 6 6 6 6 6 6 6 6 10843000 20705000 139250 15954000 17112000 16895000 17293000 14568000 15840000 16942000 16031000 10096000 19302000 927860 16625000 16416000 17101000 17487000 15000000 16185000 16449000 15459000 5 5 3 5 5 5 5 5 5 5 5 21863000000 10983000000 10881000000 6524 518 6079 35344;35345;35346;35347;35348;35349;35350;35351;35352;35353;35354;35355 42412;42413;42414;42415;42416;42417;42418;42419;42420;42421;42422;42423 42419 421 12 GFQQISFVNSIATSK Unmodified 1625.8413 0.8413211 625 P11388;P11388-2;P11388-3;P11388-4 TOP2A DNA topoisomerase 2-alpha yes no 0 0 0 0 By MS/MS By MS/MS 2.75 0.661 3 4 1 5 3 71.116 70.871 2;3 1.1679E-60 24054 20211116_3429_TMUAki_TMT10x_P_F2 300.89 246.47 186190000 319700000 363120 301870000 220070000 289140000 190500000 190700000 189790000 174490000 226200000 173350000 298250000 14539000 309020000 210180000 293130000 194760000 198370000 194400000 171080000 217080000 12 12 3 12 12 12 12 12 12 12 12 114500000 194440000 363120 181060000 142340000 227330000 130830000 117040000 116440000 105080000 136380000 106600000 181390000 9103400 186340000 136140000 226260000 132870000 124210000 119800000 103120000 130940000 8 8 3 8 8 8 8 8 8 8 8 71695000 125260000 0 120810000 77735000 61805000 59668000 73656000 73347000 69409000 89829000 66751000 116860000 5435200 122680000 74044000 66869000 61892000 74163000 74604000 67963000 86144000 4 4 0 4 4 4 4 4 4 4 4 9720200000 5197600000 4522600000 6525 625 6080 35356;35357;35358;35359;35360;35361;35362;35363 42424;42425;42426;42427;42428;42429;42430;42431;42432;42433;42434;42435 42424 12 GFQQISFVNSIATTK Unmodified 1639.857 0.85697116 1500 Q02880;Q02880-2 TOP2B DNA topoisomerase 2-beta yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 2 4 3 3 71.515 71.227 2;3 8.3209E-61 24725 20211116_3430_TMUAki_TMT10x_P_F3 305.2 277.46 50786000 85685000 1195100 84630000 58765000 82375000 61727000 58703000 55064000 59284000 67673000 47294000 79949000 5288600 86377000 56484000 83525000 62251000 60897000 56758000 57876000 64892000 9 9 7 9 9 9 9 9 9 9 9 27735000 44781000 980570 44708000 30001000 55272000 34917000 31644000 29273000 31259000 35949000 25831000 41785000 3230400 45773000 28948000 55124000 34986000 33354000 30264000 30545000 34472000 5 5 4 5 5 5 5 5 5 5 5 23051000 40903000 214570 39922000 28764000 27103000 26810000 27059000 25791000 28025000 31724000 21463000 38163000 2058100 40605000 27536000 28401000 27265000 27543000 26493000 27331000 30419000 4 4 3 4 4 4 4 4 4 4 4 4170500000 1944600000 2225900000 6526 1500 6081 35364;35365;35366;35367;35368;35369 42436;42437;42438;42439;42440;42441;42442;42443;42444;42445 42440 10 GFRDDFLGGR Unmodified 1138.552 0.55195579 1765 Q15056-2 EIF4H Eukaryotic translation initiation factor 4H yes yes 0 0 0 1 By MS/MS By MS/MS 5.2 0.748 1 2 2 2 3 43.53 43.672 3 2.3744E-09 12137 20211116_3433_TMUAki_TMT10x_P_F5 151.07 119.96 4695900 7793900 87273 8528900 5103100 5299200 4048500 5377700 5116900 4678500 5966900 4373000 7275300 476360 8600700 4871900 5599400 4194800 5442800 5188900 4598000 5729700 3 3 3 3 3 3 3 3 3 3 3 1222000 1935200 18569 2340400 2385800 2489700 1328800 1472300 1340200 1260200 1508100 1138000 1807300 134920 2361200 2262200 2504300 1403500 1542000 1368900 1239500 1449600 1 1 1 1 1 1 1 1 1 1 1 3473900 5858600 68703 6188600 2717300 2809400 2719700 3905300 3776600 3418300 4458800 3235000 5468000 341440 6239500 2609700 3095100 2791300 3900800 3820000 3358500 4280100 2 2 2 2 2 2 2 2 2 2 2 607540000 186870000 420670000 6527 1765 6082 35370;35371;35372;35373;35374 42446;42447;42448;42449 42446 4 GFSAEQIAR Unmodified 977.49304 0.49304393 2780 Q9H0U3 MAGT1 Magnesium transporter protein 1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 35.582 35.689 2 0.0026259 9056 20211116_3442_TMUAki_TMT10x_S_F4 82.749 60.062 312210 494310 4730.2 579570 323340 263120 347430 255740 265360 217190 397970 290740 461560 30449 580500 310930 287400 348610 259230 278260 213710 379800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 312210 494310 4730.2 579570 323340 263120 347430 255740 265360 217190 397970 290740 461560 30449 580500 310930 287400 348610 259230 278260 213710 379800 1 1 1 1 1 1 1 1 1 1 1 6612200 0 6612200 6528 2780 6083 35375 42450 42450 1 GFSDEDNTWEPEENLDCPDLIAEFLQSQK Unmodified 3425.4882 0.48816065 1451 P83916 CBX1 Chromobox protein homolog 1 yes yes 0 0 0 0 By MS/MS By MS/MS 1.9 0.7 3 5 2 5 5 81.796 81.784 3;4 2.6068E-18 27208 20211116_3440_TMUAki_TMT10x_S_F2 125 112.56 24024000 36795000 53501 44086000 23241000 25033000 28754000 11761000 10428000 14085000 28270000 22367000 34361000 1760800 44175000 22409000 26379000 28311000 12697000 12043000 13661000 26719000 7 7 3 7 7 7 7 7 7 7 7 13967000 20691000 39230 25044000 11662000 15854000 14845000 6355900 5303500 7424100 15601000 13003000 19323000 936750 25104000 11250000 16504000 14596000 6973600 6178300 7206700 14731000 3 3 1 3 3 3 3 3 3 3 3 10057000 16104000 14271 19043000 11580000 9179000 13909000 5405100 5124200 6661100 12669000 9363900 15038000 824070 19072000 11160000 9874500 13715000 5723600 5865100 6453900 11987000 4 4 2 4 4 4 4 4 4 4 4 5942400000 4078900000 1863500000 6529 1451 6084 35376;35377;35378;35379;35380;35381;35382;35383;35384;35385 42451;42452;42453;42454;42455;42456;42457;42458 42457 8 GFSDKLDFLEGDQKPLAQR Unmodified 2163.096 0.096032235 2610 Q99848 EBNA1BP2 Probable rRNA-processing protein EBP2 yes yes 0 0 0 2 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 63.525 63.738 4 2.5299E-14 19701 20211116_3436_TMUAki_TMT10x_P_F8 140.95 126.53 132000000 219770000 794090 218010000 172560000 241480000 163370000 186670000 181000000 176200000 183160000 122910000 205060000 11965000 222880000 165250000 243330000 166740000 192250000 183450000 172520000 176630000 9 9 5 9 9 9 9 9 9 9 9 77023000 120740000 715230 121070000 106070000 178530000 104880000 104400000 102850000 100870000 104960000 71721000 112670000 7421600 124350000 101720000 176660000 106390000 109780000 104790000 98657000 101180000 5 5 3 5 5 5 5 5 5 5 5 54981000 99024000 78855 96941000 66485000 62951000 58485000 82278000 78159000 75334000 78206000 51191000 92392000 4542900 98535000 63536000 66661000 60351000 82471000 78654000 73861000 75441000 4 4 2 4 4 4 4 4 4 4 4 13333000000 7135600000 6197400000 6530 2610 6085 35386;35387;35388;35389;35390;35391 42459;42460;42461;42462;42463;42464;42465;42466;42467 42462 9 GFSEGLWEIENNPTVK Unmodified 1818.8788 0.87882882 1165 P51858;P51858-3;P51858-2 HDGF Hepatoma-derived growth factor yes no 0 0 0 0 By MS/MS By MS/MS 4.62 1.27 1 2 2 4 4 6 7 73.762 73.709 2;3 1.496E-89 23179 20211116_3434_TMUAki_TMT10x_P_F6 311.88 271.96 113440000 185510000 67887 187900000 120870000 127240000 139540000 64130000 65537000 76195000 121530000 105610000 173110000 7912800 190620000 116260000 131950000 138280000 68749000 71898000 73919000 115500000 21 21 4 21 21 21 21 21 21 21 21 50293000 80649000 66547 81222000 54146000 74030000 62761000 29596000 29570000 34911000 52973000 46821000 75257000 3400300 82712000 52081000 74862000 62183000 32493000 32366000 33877000 50376000 10 10 3 10 10 10 10 10 10 10 10 63147000 104860000 1340.3 106680000 66722000 53212000 76782000 34534000 35967000 41285000 68555000 58790000 97853000 4512500 107910000 64179000 57088000 76093000 36256000 39532000 40043000 65124000 11 11 1 11 11 11 11 11 11 11 11 16944000000 8669100000 8274400000 6531 1165 6086 35392;35393;35394;35395;35396;35397;35398;35399;35400;35401;35402;35403;35404 42468;42469;42470;42471;42472;42473;42474;42475;42476;42477;42478;42479;42480;42481;42482;42483;42484;42485;42486;42487;42488;42489;42490 42478 23 GFSLEELR Unmodified 949.4869 0.48689592 813 P26373;P26373-2 RPL13 60S ribosomal protein L13 yes no 0 0 0 0 By MS/MS By MS/MS 2.78 1.31 2 2 2 2 1 5 4 55.948 55.832 2 0.00033505 18380 20211116_3430_TMUAki_TMT10x_P_F3 186.11 117.62 76521000 127190000 734740 149620000 118190000 129820000 76801000 103390000 97966000 90650000 109580000 71247000 118770000 6717400 150760000 112280000 132880000 80722000 106070000 99149000 89058000 105340000 11 11 4 11 11 11 11 11 11 11 11 40316000 64321000 194610 76519000 81236000 101800000 49934000 53077000 50646000 46454000 56116000 37536000 60064000 3596300 77578000 77085000 101060000 52309000 56226000 51686000 45642000 53963000 6 6 2 6 6 6 6 6 6 6 6 36205000 62871000 540130 73105000 36958000 28013000 26867000 50312000 47320000 44196000 53460000 33712000 58704000 3121100 73182000 35190000 31820000 28413000 49845000 47463000 43416000 51381000 5 5 2 5 5 5 5 5 5 5 5 17123000000 10759000000 6364300000 6532 813 6087 35405;35406;35407;35408;35409;35410;35411;35412;35413 42491;42492;42493;42494;42495;42496;42497;42498;42499;42500;42501 42493 11 GFSLLATEDK Unmodified 1079.5499 0.5498901 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 2 4 59.798 59.899 2 6.614E-10 18436 20211116_3431_TMUAki_TMT10x_P_F4 169.41 119.28 20328000 30512000 452740 39296000 24371000 24650000 20358000 18200000 19535000 18767000 25064000 18931000 28504000 2163900 39249000 23295000 25871000 20834000 18847000 20105000 18306000 24008000 3 3 3 3 3 3 3 3 3 3 3 8526700 11827000 60907 14337000 13573000 15339000 9167500 7074100 7357500 7219500 10420000 7939700 11045000 834360 14463000 12907000 15379000 9473300 7613900 7672900 7044900 9956800 1 1 1 1 1 1 1 1 1 1 1 11801000 18686000 391840 24959000 10799000 9311400 11191000 11126000 12177000 11548000 14645000 10991000 17459000 1329500 24785000 10388000 10492000 11361000 11233000 12432000 11261000 14051000 2 2 2 2 2 2 2 2 2 2 2 1591100000 751980000 839110000 6533 586 6088 35414;35415;35416;35417;35418;35419 42502;42503;42504;42505;42506;42507 42502 6 GFSLLATEDKEALKK Unmodified 1648.9036 0.903587 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 2 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 55.508 55.971 4 2.1181E-14 16556 20211116_3436_TMUAki_TMT10x_P_F8 155.1 135.81 33089000 63483000 329980 41167000 87129000 130060000 62567000 132270000 118170000 102100000 81148000 30810000 59153000 3704200 44903000 82939000 127070000 66470000 133470000 116470000 100960000 79426000 5 5 3 5 5 5 5 5 5 5 5 23594000 42949000 134300 27609000 71380000 113240000 52856000 89485000 79294000 67685000 53754000 21969000 40019000 2715900 30530000 67983000 109550000 55401000 91529000 78605000 67003000 52645000 3 3 2 3 3 3 3 3 3 3 3 9494700 20534000 195670 13558000 15749000 16822000 9711300 42785000 38879000 34414000 27393000 8841400 19134000 988280 14373000 14956000 17519000 11069000 41940000 37869000 33956000 26781000 2 2 1 2 2 2 2 2 2 2 2 5870700000 4155900000 1714800000 6534 586 6089 35420;35421;35422 42508;42509;42510;42511;42512 42509 5 GFSVTVR Unmodified 764.41809 0.41808807 1768 Q15075 EEA1 Early endosome antigen 1 yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 38.1 38.484 2 0.021055 8742 20211116_3447_TMUAki_TMT10x_S_F8 86.872 53.901 1719600 2671700 33034 2865000 3017800 2882700 1987200 1988300 1904400 1860800 2314100 1601300 2493700 191530 2909400 2869700 2915600 2067000 2062900 1955600 1822600 2219600 3 3 3 3 3 3 3 3 3 3 3 1277500 1897800 22206 2103700 2566000 2415300 1479300 1410000 1363100 1301800 1668200 1189600 1771600 144660 2136200 2434400 2418700 1553700 1481100 1402600 1275900 1599800 2 2 2 2 2 2 2 2 2 2 2 442050 773910 10828 761320 451810 467440 507890 578280 541320 558960 645860 411670 722090 46877 773160 435280 496810 513280 581780 552950 546710 619800 1 1 1 1 1 1 1 1 1 1 1 59153000 39456000 19696000 6535 1768 6090 35423;35424;35425 42513 42513 1 GFSVVADTPELQR Unmodified 1417.7201 0.72014333 1736 Q14847;Q14847-3;Q14847-2 LASP1 LIM and SH3 domain protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 54.751 54.837 2;3 3.3334E-11 16818 20211116_3442_TMUAki_TMT10x_S_F4 141.89 119.8 13594000 23046000 55278 23862000 17035000 18554000 13963000 20157000 22296000 18958000 19109000 12657000 21508000 1085800 24206000 16251000 19265000 14582000 20377000 22204000 18564000 18533000 3 3 1 3 3 3 3 3 3 3 3 4661000 6827600 0 7518700 7837000 10179000 5946700 6435500 7260300 6373000 5787700 4339000 6373500 328790 7661300 7460400 10122000 6171500 6730200 7276400 6226700 5628800 1 1 0 1 1 1 1 1 1 1 1 8932900 16219000 55278 16343000 9197900 8375400 8016500 13721000 15036000 12585000 13321000 8317500 15134000 757050 16545000 8790500 9143900 8410500 13647000 14928000 12338000 12904000 2 2 1 2 2 2 2 2 2 2 2 1089800000 582610000 507200000 6536 1736 6091 35426;35427;35428 42514;42515;42516;42517 42517 4 GFTAAGVLAAHK Unmodified 1141.6244 0.62439245 902 P32322;P32322-2;P32322-3 PYCR1 Pyrroline-5-carboxylate reductase 1, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 47.529 47.345 3 2.3379E-07 13171 20211116_3440_TMUAki_TMT10x_S_F2 124.39 84.676 3078500 5413600 22964 5166000 5520900 5465100 3433600 4577100 4328900 3947700 4671400 2866500 5050500 301210 5292200 5242000 5529100 3619700 4679700 4376900 3881400 4495700 2 2 1 2 2 2 2 2 2 2 2 1769100 3022800 0 2817200 3995900 4191000 2323300 2411500 2289000 2227200 2692400 1647100 2819900 168230 2909100 3788800 4144800 2443000 2536100 2344500 2182800 2584800 1 1 0 1 1 1 1 1 1 1 1 1309500 2390700 22964 2348800 1525000 1274100 1110400 2165600 2039900 1720500 1979000 1219400 2230700 132980 2383100 1453200 1384300 1176700 2143500 2032400 1698600 1911000 1 1 1 1 1 1 1 1 1 1 1 747620000 542870000 204750000 6537 902 6092 35429;35430 42518;42519 42519 2 GFTDADNTWEPEENLDCPELIEAFLNSQK Unmodified 3381.4983 0.4983314 1607 Q13185 CBX3 Chromobox protein homolog 3 yes yes 0 0 0 0 By MS/MS By MS/MS 1.9 0.943 4 4 1 1 4 6 81.711 81.7 3;4 1.1065E-42 28433 20211116_3429_TMUAki_TMT10x_P_F2 187.72 181.36 63493000 97699000 96491 109490000 62270000 62493000 73459000 19904000 14743000 24660000 58695000 59116000 91207000 3896800 110160000 59973000 65606000 72110000 22529000 19127000 23888000 55261000 14 14 5 14 14 14 14 14 14 14 14 44336000 66312000 13421 74244000 40639000 48731000 48704000 13424000 9241400 15806000 39097000 41281000 61906000 2610800 74799000 39164000 50424000 47760000 15502000 12188000 15338000 36791000 7 7 2 7 7 7 7 7 7 7 7 19157000 31386000 83070 35249000 21632000 13763000 24754000 6479800 5501600 8854500 19599000 17836000 29301000 1286000 35366000 20809000 15182000 24350000 7026900 6939600 8549900 18470000 7 7 3 7 7 7 7 7 7 7 7 22054000000 14216000000 7837600000 6538 1607 6093 35431;35432;35433;35434;35435;35436;35437;35438;35439;35440 42520;42521;42522;42523;42524;42525;42526;42527;42528;42529;42530;42531;42532;42533 42525 14 GFTGIDSEYEKPEAPELVLK Unmodified 2221.1154 0.11543027 205 O43252 PAPSS1 Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes yes 0 0 0 1 By MS/MS 7 0 1 1 68.94 69.249 3 2.2346E-07 23743 20211116_3446_TMUAki_TMT10x_S_F7 91.637 75.514 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6539 205 6094 35441 42534 42534 1 GFTIPEAFR Unmodified 1036.5342 0.53418046 80 O00299 CLIC1 Chloride intracellular channel protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 62.791 63.014 2 2.1476E-05 20604 20211116_3435_TMUAki_TMT10x_P_F7 156.51 102.3 133360000 219000000 1469500 229200000 173340000 223580000 157610000 158320000 142170000 152480000 175240000 124180000 204380000 12933000 233010000 165900000 226650000 160210000 164090000 146480000 149160000 168020000 11 11 8 11 11 11 11 11 11 11 11 78516000 122110000 911560 130340000 117320000 168830000 101440000 89670000 78277000 86686000 97879000 73113000 113970000 7856800 132960000 112140000 167840000 103000000 95076000 81342000 84785000 93814000 6 6 4 6 6 6 6 6 6 6 6 54846000 96886000 557970 98857000 56026000 54753000 56172000 68648000 63889000 65794000 77362000 51071000 90413000 5076100 100050000 53757000 58811000 57209000 69010000 65136000 64375000 74211000 5 5 4 5 5 5 5 5 5 5 5 5930600000 2799100000 3131400000 6540 80 6095 35442;35443;35444;35445;35446;35447 42535;42536;42537;42538;42539;42540;42541;42542;42543;42544;42545 42537 11 GFTLNDAANSR Unmodified 1164.5523 0.55234972 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4 1 1 1 1 1 40.108 40.196 2 0.0022023 11836 20211116_3430_TMUAki_TMT10x_P_F3 79.86 56.303 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6541 1018 6096 35448;35449 42546;42547 42546 2 GFTVMNENERYDAVQHCR Oxidation (M) 2240.9691 0.96913394 1103 P49585 PCYT1A Choline-phosphate cytidylyltransferase A yes yes 0 0 1 1 By MS/MS 4.5 0.5 1 1 2 33.311 33.296 4 2.0097E-08 7725 20211116_3431_TMUAki_TMT10x_P_F4 115.73 106.54 510840 856690 0 890000 1466500 1568700 888670 854380 926990 804590 817310 475500 799510 38409 915740 1390500 1540100 932820 903230 937490 787850 791830 1 1 0 1 1 1 1 1 1 1 1 510840 856690 0 890000 1466500 1568700 888670 854380 926990 804590 817310 475500 799510 38409 915740 1390500 1540100 932820 903230 937490 787850 791830 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 186500000 186500000 0 6542 1103 6097 35450;35451 42548 42548 1463 1 GFVEFAAKPPAR Unmodified 1288.6928 0.69280637 2323 Q8WXF1;Q8WXF1-2 PSPC1 Paraspeckle component 1 yes no 0 0 0 1 By MS/MS By MS/MS 2.8 2.64 2 2 1 3 2 47.6 47.5 3 8.7388E-12 12990 20211116_3428_TMUAki_TMT10x_P_F1 162.49 123.71 20723000 32608000 176630 35296000 37773000 44721000 25661000 37073000 32746000 30134000 31734000 19297000 30437000 2104000 35959000 35924000 44805000 26882000 37871000 32968000 29716000 30644000 7 7 6 7 7 7 7 7 7 7 7 14575000 22636000 144900 24430000 32186000 38302000 19922000 25884000 23068000 21118000 22337000 13572000 21129000 1572600 25004000 30561000 37885000 20946000 26801000 23304000 20821000 21570000 5 5 4 5 5 5 5 5 5 5 5 6148000 9971700 31731 10866000 5587600 6419300 5738800 11189000 9678500 9016200 9397500 5724600 9308000 531430 10955000 5363400 6921000 5935200 11070000 9663900 8895200 9074100 2 2 2 2 2 2 2 2 2 2 2 1952600000 1408300000 544380000 6543 2323 6098 35452;35453;35454;35455;35456 42549;42550;42551;42552;42553;42554;42555 42550 7 GFVEFAAKPPARK Unmodified 1416.7878 0.78776939 2323 Q8WXF1;Q8WXF1-2 PSPC1 Paraspeckle component 1 yes no 0 0 0 2 By MS/MS By MS/MS 3.2 0.748 1 2 2 2 3 43.2 43.208 4 3.4628E-19 11504 20211116_3440_TMUAki_TMT10x_S_F2 191.29 152.89 14829000 21712000 170770 26824000 27429000 24225000 15132000 16464000 19612000 16324000 19022000 13809000 20278000 1534400 26965000 25999000 24664000 16131000 17126000 19735000 15948000 18369000 7 7 6 7 7 7 7 7 7 7 7 9211300 13003000 91043 16405000 21819000 19572000 10191000 9886000 11828000 9983600 11458000 8577300 12146000 1025100 16543000 20634000 19525000 10995000 10543000 11948000 9746500 11065000 3 3 3 3 3 3 3 3 3 3 3 5618200 8708400 79724 10418000 5609300 4653100 4941700 6577500 7783800 6340000 7564200 5231400 8132200 509320 10421000 5364500 5139100 5135500 6583300 7786500 6201800 7303700 4 4 3 4 4 4 4 4 4 4 4 2019000000 1207300000 811660000 6544 2323 6099 35457;35458;35459;35460;35461 42556;42557;42558;42559;42560;42561;42562 42559 7 GFVEPDHYVVVGAQR Unmodified 1671.8369 0.83690442 480 P02786 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 47.426 47.577 3 1.809E-19 12486 20211116_3434_TMUAki_TMT10x_P_F6 166.6 157.09 17311000 27818000 273080 32278000 28654000 27325000 18121000 24926000 25138000 21340000 26067000 16120000 25974000 1835300 32540000 27226000 28088000 19149000 25357000 25299000 20990000 25117000 8 8 7 8 8 8 8 8 8 8 8 7949300 12465000 59355 14238000 19406000 18971000 9766300 11776000 11899000 9478800 11577000 7402000 11637000 861520 14470000 18368000 18872000 10476000 12268000 12000000 9352100 11178000 3 3 2 3 3 3 3 3 3 3 3 9361800 15353000 213730 18041000 9248400 8354000 8354500 13149000 13239000 11862000 14490000 8718400 14336000 973760 18070000 8858300 9215800 8672200 13089000 13299000 11638000 13939000 5 5 5 5 5 5 5 5 5 5 5 2295900000 1426400000 869520000 6545 480 6100 35462;35463;35464;35465;35466;35467 42563;42564;42565;42566;42567;42568;42569;42570 42565 8 GFVFITFKEEEPVK Unmodified 1668.8763 0.87630962 2601 Q99729-3;Q99729-2;Q99729;Q99729-4 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 0 0 0 1 By MS/MS By MS/MS 6.75 1.09 1 2 1 3 1 71.384 71.618 3 1.2087E-23 24714 20211116_3446_TMUAki_TMT10x_S_F7 190.86 167.97 37335000 62143000 161720 50791000 40832000 69377000 45673000 35000000 44351000 44278000 45594000 34762000 57943000 3078400 52895000 39269000 68758000 46034000 37598000 45222000 42862000 43944000 5 5 2 5 5 5 5 5 5 5 5 28771000 47555000 161720 38969000 31592000 61091000 35350000 27377000 35119000 34773000 35446000 26790000 44341000 2513500 40692000 30392000 60113000 35653000 29758000 35749000 33656000 34183000 4 4 2 4 4 4 4 4 4 4 4 8563200 14588000 0 11823000 9240200 8286300 10324000 7622500 9232900 9504900 10148000 7972000 13602000 564910 12204000 8877100 8644800 10381000 7839900 9473100 9205400 9760800 1 1 0 1 1 1 1 1 1 1 1 2201300000 1271300000 930000000 6546 2601 6101 35468;35469;35470;35471 42571;42572;42573;42574;42575;42576 42576 6 GFVFITFKEEEPVKK Unmodified 1796.9713 0.97127264 2601 Q99729-3;Q99729-2;Q99729;Q99729-4 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 0 0 0 2 By MS/MS By MS/MS 4.67 2.91 2 2 1 2 2 5 4 63.898 63.956 4 1.063E-29 19680 20211116_3436_TMUAki_TMT10x_P_F8 204.82 187.33 266860000 446570000 3405800 360400000 291370000 505960000 303250000 441350000 443040000 428430000 366670000 248490000 416370000 25061000 375930000 279850000 505010000 311300000 451610000 441890000 418960000 356080000 15 15 13 15 15 15 15 15 15 15 15 111020000 185400000 1606900 146710000 155200000 323230000 126430000 205640000 180170000 192360000 145800000 103380000 172860000 10740000 155040000 148150000 315750000 131410000 214620000 179720000 188410000 141710000 7 7 5 7 7 7 7 7 7 7 7 155830000 261160000 1798900 213690000 136170000 182730000 176820000 235710000 262880000 236070000 220870000 145110000 243520000 14321000 220890000 131700000 189260000 179890000 236990000 262180000 230540000 214360000 8 8 8 8 8 8 8 8 8 8 8 22176000000 13880000000 8295800000 6547 2601 6102 35472;35473;35474;35475;35476;35477;35478;35479;35480 42577;42578;42579;42580;42581;42582;42583;42584;42585;42586;42587;42588;42589;42590;42591 42583 15 GFVLDATDGR Unmodified 1049.5142 0.5141733 375 O75976;O75976-2 CPD Carboxypeptidase D yes no 0 0 0 0 By MS/MS By matching 4 0 2 1 1 48.395 48.555 2 0.0016744 13869 20211116_3431_TMUAki_TMT10x_P_F4 86.136 69.802 3201900 4571100 0 4873100 6686400 8617200 4517300 4425300 4768500 3856000 4406000 2981000 4266400 281830 5006000 6354600 8453500 4703200 4693900 4827300 3789400 4261600 1 1 0 1 1 1 1 1 1 1 1 3201900 4571100 0 4873100 6686400 8617200 4517300 4425300 4768500 3856000 4406000 2981000 4266400 281830 5006000 6354600 8453500 4703200 4693900 4827300 3789400 4261600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 398320000 217360000 180970000 6548 375 6103 35481;35482 42592 42592 1 GFVLQDTVEQLR Unmodified 1403.7409 0.74087877 1254 P56192;P56192-2 MARS Methionine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 5.25 0.829 1 1 2 3 1 64.805 64.852 2 2.3565E-16 19940 20211116_3445_TMUAki_TMT10x_S_F6 203.02 160.92 13387000 23296000 174070 19996000 18089000 29628000 17225000 23736000 17830000 18660000 20057000 12466000 21726000 1337900 20777000 17334000 29457000 17536000 24279000 18191000 18434000 19279000 3 3 3 3 3 3 3 3 3 3 3 10249000 17829000 157200 15093000 13895000 25606000 13559000 18882000 13791000 13963000 15362000 9543800 16626000 1047300 15748000 13324000 25286000 13778000 19390000 14076000 13840000 14771000 2 2 2 2 2 2 2 2 2 2 2 3137900 5467400 16869 4903600 4194600 4021900 3666100 4854200 4038900 4697500 4695100 2921900 5099500 290680 5029100 4009700 4170300 3757900 4888700 4115900 4594200 4508900 1 1 1 1 1 1 1 1 1 1 1 4298800000 3350300000 948430000 6549 1254 6104 35483;35484;35485;35486 42593;42594;42595 42595 3 GFVPNMQVEGVFYVNDALEK Oxidation (M) 2271.0882 0.088169665 3285 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog yes yes 0 0 1 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 77.555 77.541 3 9.4636E-07 25129 20211116_3445_TMUAki_TMT10x_S_F6 89.049 78.853 11946000 20613000 259740 17401000 13830000 19300000 14845000 13766000 12826000 14386000 15537000 11125000 19223000 1258900 18008000 13302000 19420000 14943000 14294000 13233000 14025000 14904000 4 4 4 4 4 4 4 4 4 4 4 6478100 10970000 174730 9172200 6057800 12886000 7880100 7429400 7149400 7657200 7785900 6033000 10230000 694030 9539700 5864900 12776000 7875200 7835800 7327800 7469000 7491100 2 2 2 2 2 2 2 2 2 2 2 5468300 9643000 85009 8229100 7772200 6414100 6965100 6336900 5677000 6728800 7751200 5092100 8992700 564850 8467800 7437200 6644500 7067400 6458600 5905400 6555600 7413100 2 2 2 2 2 2 2 2 2 2 2 2309400000 1202600000 1106800000 6550 3285 6105 35487;35488;35489 42596;42597;42598;42599 42599 3249 4 GFVQVDDGRK Unmodified 1119.5673 0.5672715 1218 P54136;P54136-2 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.354 35.408 3 1.4648E-06 8915 20211116_3433_TMUAki_TMT10x_P_F5 150.1 126.13 2830600 4369400 51430 4686200 4912300 5345200 3514300 3673600 3876700 3376700 4049700 2636000 4078300 311760 4768200 4678100 5367200 3649000 3810600 3934200 3310100 3901200 3 3 3 3 3 3 3 3 3 3 3 2424600 3661700 43203 3998900 4418300 4904800 3046000 2792100 2892800 2695800 3279000 2257800 3418000 269200 4069200 4204600 4893300 3156700 2942500 2963400 2636800 3151200 2 2 2 2 2 2 2 2 2 2 2 406070 707730 8226.8 687310 493940 440430 468310 881570 983910 680880 770660 378160 660310 42564 698920 473470 473820 492330 868050 970830 673250 750030 1 1 1 1 1 1 1 1 1 1 1 202260000 170530000 31731000 6551 1218 6106 35490;35491;35492 42600;42601 42601 2 GFVVINQK Unmodified 903.5178 0.51780212 982 P40227;P40227-2;Q92526;Q92526-2;Q92526-3 CCT6A;CCT6B T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2 yes no 0 0 0 0 By MS/MS By MS/MS 5 3.29 2 1 2 3 2 48.997 49.071 2 0.00042277 13214 20211116_3447_TMUAki_TMT10x_S_F8 155.73 80.424 30262000 45002000 231590 51604000 35140000 30495000 30564000 22031000 21478000 22401000 32909000 28179000 42016000 2781600 51863000 33592000 32178000 30960000 22838000 22654000 21862000 31392000 5 5 4 5 5 5 5 5 5 5 5 12525000 18489000 145600 21136000 19032000 17683000 12433000 9015400 8644800 8979800 13255000 11663000 17262000 1265200 21323000 18091000 18032000 12839000 9602600 9124000 8771600 12644000 2 2 2 2 2 2 2 2 2 2 2 17737000 26513000 85991 30468000 16108000 12812000 18131000 13016000 12834000 13421000 19654000 16516000 24754000 1516400 30539000 15500000 14146000 18121000 13236000 13530000 13091000 18748000 3 3 2 3 3 3 3 3 3 3 3 1997100000 1186600000 810540000 6552 982 6107 35493;35494;35495;35496;35497 42602;42603;42604;42605;42606 42605 5 GFYDPPR Unmodified 850.39735 0.39735263 893 P31942;P31942-2;P31942-3 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes no 0 0 0 0 By MS/MS By MS/MS 4.17 1.07 2 2 1 1 2 4 36.079 36.114 2 0.019407 8946 20211116_3442_TMUAki_TMT10x_S_F4 88.627 38.507 6467500 10066000 46656 10495000 13138000 10554000 7973200 7002400 7121600 6202400 8901200 6022100 9393900 654830 10677000 12469000 10668000 8331300 7274800 7345500 6090500 8531600 8 8 5 8 8 8 8 8 8 8 8 3784300 5965000 33282 6244200 10555000 8469500 5195500 4369700 4360300 3698800 5294900 3523800 5567000 434270 6383600 9987400 8398800 5524400 4629600 4505600 3640100 5078900 4 4 2 4 4 4 4 4 4 4 4 2683200 4100700 13374 4250600 2583400 2084600 2777700 2632700 2761300 2503600 3606300 2498300 3826900 220560 4293300 2481900 2269600 2806900 2645200 2839900 2450500 3452800 4 4 3 4 4 4 4 4 4 4 4 267000000 149520000 117480000 6553 893 6108 35498;35499;35500;35501;35502;35503 42607;42608;42609;42610;42611;42612 42610 6 GFYDPPRR Unmodified 1006.4985 0.49846366 893 P31942;P31942-2;P31942-3 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 31.03 31.015 3 0.012098 7065 20211116_3433_TMUAki_TMT10x_P_F5 70.912 26.465 493150 758670 18764 759850 1103800 963180 555280 552000 560290 529510 621560 459310 707920 66926 778130 1045800 959440 592090 581310 571950 518070 597700 1 1 1 1 1 1 1 1 1 1 1 493150 758670 18764 759850 1103800 963180 555280 552000 560290 529510 621560 459310 707920 66926 778130 1045800 959440 592090 581310 571950 518070 597700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 43042000 43042000 0 6554 893 6109 35504;35505 42613 42613 1 GFYEALFDGHPPGK Unmodified 1533.7252 0.72522871 856 P29692-2 EEF1D Elongation factor 1-delta yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 64.39 64.927 3 1.8137E-06 21336 20211116_3435_TMUAki_TMT10x_P_F7 88.021 73.763 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6555 856 6110 35506;35507 42614;42615 42614 2 GFYIYQEGVK Unmodified 1202.5972 0.59717465 992 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 By matching By MS/MS 7 0 2 1 1 57.577 58.205 2 2.0708E-09 19140 20211116_3446_TMUAki_TMT10x_S_F7 181.25 135.09 3628800 6549900 0 7135500 4239400 3331900 2944100 5095300 5193900 4170800 5491700 3378500 6114000 280700 7181200 4030500 3668500 3123700 5063800 5196100 4111500 5288400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3628800 6549900 0 7135500 4239400 3331900 2944100 5095300 5193900 4170800 5491700 3378500 6114000 280700 7181200 4030500 3668500 3123700 5063800 5196100 4111500 5288400 1 1 0 1 1 1 1 1 1 1 1 1111900000 574960000 536960000 6556 992 6111 35508;35509 42616 42616 1 GGAAPEGPNEAEVTSGKPEQEVPDAEEEK Unmodified 2950.3316 0.33158365 1091 P49321;P49321-3;P49321-4 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 1 By MS/MS By MS/MS 1.87 0.957 7 4 3 1 7 8 44.76 44.641 3;4;5 8.8544E-53 13425 20211116_3429_TMUAki_TMT10x_P_F2 211.19 193.54 17608000 26815000 339750 60695000 32363000 27226000 16459000 20217000 33304000 18381000 30870000 16397000 25148000 1791700 59025000 30651000 29643000 18048000 20854000 33058000 18028000 29855000 16 16 11 16 16 16 16 16 16 16 16 6252800 9672000 216150 21628000 29476000 24508000 14263000 8026400 12205000 7458000 11374000 5823600 9069700 865080 21263000 27893000 24419000 15199000 8975400 12477000 7307300 10997000 9 9 7 9 9 9 9 9 9 9 9 11355000 17143000 123600 39067000 2887800 2717800 2195500 12190000 21099000 10923000 19497000 10574000 16078000 926590 37762000 2758300 5223600 2848400 11878000 20580000 10720000 18857000 7 7 4 7 7 7 7 7 7 7 7 8166100000 5782300000 2383700000 6557 1091 6112 35510;35511;35512;35513;35514;35515;35516;35517;35518;35519;35520;35521;35522;35523;35524 42617;42618;42619;42620;42621;42622;42623;42624;42625;42626;42627;42628;42629;42630;42631;42632 42621 16 GGAAVDPDSGLEHSAHVLEK Unmodified 1987.9599 0.95993268 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.707 1 2 1 1 3 42.663 42.688 4 2.1178E-24 11475 20211116_3431_TMUAki_TMT10x_P_F4 165.74 151.05 5078400 8255100 56057 11389000 8117800 8610600 4425600 7524000 9180100 7592400 7556200 4728800 7714600 510000 11355000 7693900 8918800 4829300 7706700 9073500 7412300 7339500 4 4 3 4 4 4 4 4 4 4 4 1633000 2317100 0 3508900 5095000 5673900 2280300 2459200 2769800 2340300 2368900 1520500 2166500 178030 3527800 4814100 5574400 2475400 2659000 2782200 2290600 2297600 1 1 0 1 1 1 1 1 1 1 1 3445300 5938000 56057 7879700 3022800 2936700 2145200 5064800 6410200 5252100 5187300 3208400 5548100 331970 7827500 2879800 3344400 2353900 5047700 6291300 5121700 5041800 3 3 3 3 3 3 3 3 3 3 3 1287300000 723360000 563960000 6558 586 6113 35525;35526;35527;35528 42633;42634;42635;42636 42633 4 GGAEQFMEETER Oxidation (M) 1398.5722 0.57215846 2609 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 1 0 By MS/MS By MS/MS 1.75 0.829 6 3 3 6 6 33.725 33.666 2;3 9.5633E-07 7224 20211116_3428_TMUAki_TMT10x_P_F1 123.51 107.62 5041700 7768800 21127 7894800 5022300 9817400 4175400 4520200 5099100 3995500 7093600 4694100 7249600 391700 7899500 4774700 9763700 4308200 4847500 5217800 3923800 6781200 12 12 4 11 11 12 12 12 12 12 12 3351600 4996900 18302 4130500 3768200 8845600 3016200 2894000 3327300 2648800 4660100 3120600 4659400 276430 4171200 3575800 8586700 3108400 3235500 3418600 2597000 4454200 7 7 3 6 6 7 7 7 7 7 7 1690100 2771900 2824.5 3764300 1254100 971860 1159200 1626200 1771800 1346700 2433500 1573500 2590200 115270 3728300 1198900 1177000 1199800 1612000 1799200 1326800 2327000 5 5 1 5 5 5 5 5 5 5 5 1129600000 768230000 361340000 6559 2609 6114 35529;35530;35531;35532;35533;35534;35535;35536;35537;35538;35539;35540 42637;42638;42639;42640;42641;42642;42643;42644;42645;42646;42647;42648 42637 2846 12 GGAEQFMEETER Unmodified 1382.5772 0.57724384 2609 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 By MS/MS By MS/MS 2.11 0.737 2 4 3 4 5 43.845 43.691 2;3 1.5325E-17 11436 20211116_3428_TMUAki_TMT10x_P_F1 217.74 198.12 15305000 23398000 23566 33660000 28886000 19943000 16621000 9881300 8919800 10304000 18822000 14248000 21871000 1158700 33409000 27370000 20936000 17263000 10567000 9762700 10046000 17850000 9 9 3 9 9 9 9 9 9 9 9 9511700 14164000 10294 20282000 25062000 17430000 13720000 5991600 5467400 6365200 11566000 8854800 13239000 813280 20216000 23733000 17676000 14255000 6680300 6139700 6201200 10968000 5 5 2 5 5 5 5 5 5 5 5 5793100 9233800 13272 13378000 3823600 2512300 2900900 3889700 3452400 3938400 7255800 5393100 8631600 345390 13193000 3636100 3260500 3007900 3886700 3623100 3844400 6881700 4 4 1 4 4 4 4 4 4 4 4 2337400000 1599200000 738130000 6560 2609 6114 35541;35542;35543;35544;35545;35546;35547;35548;35549 42649;42650;42651;42652;42653;42654;42655;42656;42657 42649 9 GGAEVQIFAPDVPQMHVIDHTK Oxidation (M) 2404.1845 0.18452967 2 P0DPI2;A0A0B4J2D5;P0DPI2-2;A0A0B4J2D5-2 yes no 0 0 1 0 By MS/MS By MS/MS 5.33 0.745 1 2 3 2 4 50.655 50.808 4;5 1.9104E-10 13817 20211116_3444_TMUAki_TMT10x_S_F5 107.47 93.158 11441000 20320000 314410 21732000 13534000 14690000 11603000 19741000 18539000 17028000 18030000 10655000 18966000 1231100 21966000 12945000 15513000 12085000 19736000 18539000 16742000 17409000 7 7 5 7 7 7 7 7 7 7 7 1780600 3124600 0 2856000 3400500 4872900 2385900 3311600 2798900 2656500 2678900 1657800 2914500 157700 2962700 3234200 4804700 2485900 3426200 2825100 2621500 2587900 1 1 0 1 1 1 1 1 1 1 1 9660500 17196000 314410 18876000 10134000 9816900 9217600 16430000 15740000 14371000 15351000 8997000 16052000 1073400 19003000 9710900 10708000 9599600 16309000 15714000 14121000 14821000 6 6 5 6 6 6 6 6 6 6 6 3436000000 1014900000 2421100000 6561 2 6115 35550;35551;35552;35553;35554;35555 42658;42659;42660;42661;42662;42663;42664 42659 1 7 GGAEVQIFAPDVPQMHVIDHTK Unmodified 2388.1896 0.18961504 2 P0DPI2;A0A0B4J2D5;P0DPI2-2;A0A0B4J2D5-2 yes no 0 0 0 0 By MS/MS 7 0 1 1 59.299 60.023 4 6.174E-05 19398 20211116_3435_TMUAki_TMT10x_P_F7 68.88 58.246 2568900 4268800 23393 4124000 3552100 5831300 3667500 3267800 2971100 3185400 3615500 2392100 3982700 248550 4242900 3410300 5777700 3692600 3449400 3075900 3114400 3467800 1 1 1 1 1 1 1 1 1 1 1 2568900 4268800 23393 4124000 3552100 5831300 3667500 3267800 2971100 3185400 3615500 2392100 3982700 248550 4242900 3410300 5777700 3692600 3449400 3075900 3114400 3467800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 696790000 696790000 0 6562 2 6115 35556 42665 42665 1 GGAIDRYWPTADGR Unmodified 1533.7324 0.73243935 1187 P52788;P52788-2 SMS Spermine synthase yes no 0 0 0 1 By MS/MS 6 0 1 1 45.494 45.569 3 0.10042 11696 20211116_3434_TMUAki_TMT10x_P_F6 33.149 18.177 2305300 3068700 83704 3674100 7543200 6087400 4406600 6120200 6532500 4583800 4065500 2147100 2865700 342500 3741500 7159000 6053300 4699600 6174900 6465100 4540100 3998200 1 1 1 1 1 1 1 1 1 1 1 2305300 3068700 83704 3674100 7543200 6087400 4406600 6120200 6532500 4583800 4065500 2147100 2865700 342500 3741500 7159000 6053300 4699600 6174900 6465100 4540100 3998200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 184050000 184050000 0 6563 1187 6116 35557 42666 42666 1 GGASTTSTTPTPTPSSTSTSRPVPTAQLSPTEISAVR Unmodified 3627.8228 0.82277709 2524 Q96MY1 NOL4L Nucleolar protein 4-like yes yes 0 0 0 1 By MS/MS 8 0 1 1 47.912 47.82 4 2.9721E-74 12740 20211116_3447_TMUAki_TMT10x_S_F8 228.53 214.45 247490 482910 1498.1 476910 150910 251600 177460 352180 419310 340530 348130 230450 450580 20562 483580 145450 272470 186110 352650 413470 333060 338030 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 247490 482910 1498.1 476910 150910 251600 177460 352180 419310 340530 348130 230450 450580 20562 483580 145450 272470 186110 352650 413470 333060 338030 1 1 1 1 1 1 1 1 1 1 1 441190000 0 441190000 6564 2524 6117 35558 42667 42667 1 GGCVDSTNQSLALLLMTLGQQDVSK Unmodified 2634.2993 0.29930143 3242 Q9Y2P8;Q9Y2P8-2 RCL1 RNA 3'-terminal phosphate cyclase-like protein yes no 0 0 0 0 By MS/MS By matching 8 0 2 1 1 81.223 81.223 3 1.2103E-08 26912 20211116_3436_TMUAki_TMT10x_P_F8 99.838 97.398 854500 1523100 3703.1 1540400 891480 1412700 1129500 635800 526110 512170 970150 795650 1421300 74813 1568400 861000 1429500 1114600 681940 577380 505300 922120 1 1 1 1 1 1 1 1 1 1 1 854500 1523100 3703.1 1540400 891480 1412700 1129500 635800 526110 512170 970150 795650 1421300 74813 1568400 861000 1429500 1114600 681940 577380 505300 922120 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 228640000 173800000 54831000 6565 3242 6118 35559;35560 42668 42668 1 GGDDLGTEIANTLYR Unmodified 1593.7635 0.76346471 1756 Q15024 EXOSC7 Exosome complex component RRP42 yes yes 0 0 0 0 By MS/MS By MS/MS 2.86 0.99 1 1 3 2 4 3 69.047 68.825 2;3 1.4437E-09 22171 20211116_3431_TMUAki_TMT10x_P_F4 134.18 98.223 22164000 36202000 142250 37381000 24307000 33963000 23504000 24098000 24975000 25038000 27310000 20637000 33785000 1849800 38001000 23286000 34588000 23929000 25027000 25426000 24415000 26273000 6 6 3 6 6 6 6 6 6 6 6 11667000 18442000 74170 19608000 14920000 24624000 14614000 12604000 13459000 13269000 14199000 10863000 17213000 972970 19996000 14296000 24505000 14804000 13442000 13769000 12932000 13675000 3 3 2 3 3 3 3 3 3 3 3 10497000 17760000 68079 17774000 9386900 9339400 8889900 11494000 11516000 11769000 13111000 9773500 16572000 876810 18005000 8989600 10083000 9124700 11585000 11657000 11483000 12598000 3 3 1 3 3 3 3 3 3 3 3 1951000000 1060900000 890090000 6566 1756 6119 35561;35562;35563;35564;35565;35566;35567 42669;42670;42671;42672;42673;42674 42671 6 GGDGGESERFNPGELR Unmodified 1675.755 0.75502529 132 O14776;O14776-2 TCERG1 Transcription elongation regulator 1 yes no 0 0 0 1 By MS/MS 1 0 1 1 35.297 35.297 3 2.3944E-05 8127 20211116_3428_TMUAki_TMT10x_P_F1 93.768 75.672 450740 682570 1455.8 1011100 1058200 946300 689550 374410 406280 369530 525770 419690 638140 47234 1007300 1005400 955170 709950 409390 429950 361100 503500 1 1 1 1 1 1 1 1 1 1 1 450740 682570 1455.8 1011100 1058200 946300 689550 374410 406280 369530 525770 419690 638140 47234 1007300 1005400 955170 709950 409390 429950 361100 503500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38549000 38549000 0 6567 132 6120 35568 42675 42675 1 GGDGIKPPPIIGR Unmodified 1275.7299 0.72992016 2947 Q9NTK5;Q9NTK5-3 OLA1 Obg-like ATPase 1 yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 42.83 43.084 3 0.0021981 12889 20211116_3446_TMUAki_TMT10x_S_F7 68.42 52.529 3099900 4942800 41831 6358900 4969300 4222300 3271200 4530100 4617100 3905000 4864700 2886700 4617500 322170 6355100 4724600 4440100 3448500 4571600 4647000 3839600 4685100 3 3 3 3 3 3 3 3 3 3 3 1063600 1649100 6863.8 2027100 3037300 2614800 1559700 1448000 1415500 1226200 1665100 990350 1540200 122220 2050100 2875600 2601300 1654800 1524500 1455200 1206700 1598500 1 1 1 1 1 1 1 1 1 1 1 2036400 3293700 34967 4331800 1931900 1607500 1711500 3082100 3201600 2678900 3199600 1896300 3077300 199950 4305000 1849000 1838700 1793700 3047100 3191800 2632900 3086600 2 2 2 2 2 2 2 2 2 2 2 170900000 77362000 93541000 6568 2947 6121 35569;35570;35571 42676;42677;42678 42677 3 GGDGYDGGYGGFDDYGGYNNYGYGNDGFDDR Unmodified 3278.2034 0.20342303 893 P31942;P31942-3;P31942-4;P31942-5 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes no 0 0 0 0 By MS/MS 1 0 1 1 71.155 71.155 3 4.4789E-27 22687 20211116_3428_TMUAki_TMT10x_P_F1 144.23 134.89 719880 1135500 0 1015400 784560 1476500 919940 907000 723910 858300 903440 670250 1059100 56329 1051200 755390 1463000 919990 949460 751400 840270 865960 1 1 0 1 1 1 1 1 1 1 1 719880 1135500 0 1015400 784560 1476500 919940 907000 723910 858300 903440 670250 1059100 56329 1051200 755390 1463000 919990 949460 751400 840270 865960 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 397990000 397990000 0 6569 893 6122 35572 42679 42679 1 GGDISVCEWYQR Unmodified 1468.6405 0.6405128 676 P14854 COX6B1 Cytochrome c oxidase subunit 6B1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.83 0.687 2 3 1 2 4 53.662 53.665 2;3 3.0639E-30 15835 20211116_3431_TMUAki_TMT10x_P_F4 258.33 226.95 14150000 22360000 0 25724000 15225000 12756000 13721000 8512800 7216800 8422400 15141000 13173000 20877000 962850 25811000 14546000 13699000 13795000 8866600 7907700 8229500 14361000 4 4 0 4 4 4 4 4 4 4 4 4333500 7108700 0 7840900 5836400 6180300 5345100 2324100 1874000 2289800 4453900 4034400 6635900 305700 7922500 5579000 6311800 5340000 2556600 2149900 2237700 4216700 1 1 0 1 1 1 1 1 1 1 1 9816200 15251000 0 17883000 9388200 6575300 8376300 6188700 5342800 6132600 10687000 9138700 14241000 657160 17889000 8966600 7387300 8455400 6310100 5757800 5991800 10144000 3 3 0 3 3 3 3 3 3 3 3 1721900000 544540000 1177400000 6570 676 6123 35573;35574;35575;35576;35577;35578 42680;42681;42682;42683;42684;42685 42681 6 GGDLMAYDR Oxidation (M) 1012.4284 0.42839476 1329;1330 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 1 0 By MS/MS By MS/MS 2.25 0.829 1 1 2 3 1 33.28 33.158 2 0.0026071 8742 20211116_3429_TMUAki_TMT10x_P_F2 93.429 66.736 1035000 1777200 0 1953600 2619700 1870400 1385800 1209500 1340600 1061500 1684800 963640 1659000 105660 1979300 2480700 1895800 1468800 1258600 1378000 1042800 1614600 2 2 0 2 2 2 2 2 2 2 2 620810 1093900 0 1167400 2169300 1488400 891240 733900 835190 638740 1059000 578020 1021000 71456 1190600 2047800 1479600 969120 781410 860060 627750 1014700 1 1 0 1 1 1 1 1 1 1 1 414160 683310 0 786190 450390 382000 494600 475580 505420 422750 625760 385620 637990 34200 788730 432920 416190 499720 477240 517970 415060 599930 1 1 0 1 1 1 1 1 1 1 1 90391000 64639000 25752000 6571 1329;1330 6124 35579;35580;35581;35582 42686;42687 42686 1783 2 GGDLMAYDRR Oxidation (M) 1168.5295 0.52950579 1329;1330 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 1 1 By MS/MS By MS/MS 3.8 1.17 1 1 1 2 3 2 29.891 29.81 3 0.0017247 6291 20211116_3431_TMUAki_TMT10x_P_F4 77.662 56.199 1617900 2555600 27208 2345800 3448700 2868000 1861500 1873500 1974500 1615300 2346800 1506600 2383900 182260 2415700 3268400 2867100 1974700 1947300 2016900 1588200 2252300 3 3 2 3 3 3 3 3 3 3 3 1229500 1841400 27208 1693200 2917700 2411700 1339200 1359300 1398100 1112600 1681900 1145000 1717600 150940 1748600 2759600 2388900 1442800 1427700 1429900 1096800 1613700 2 2 2 2 2 2 2 2 2 2 2 388370 714250 0 652570 531010 456300 522300 514260 576320 502710 664870 361580 666240 31326 667150 508750 478260 531920 519590 587090 491450 638630 1 1 0 1 1 1 1 1 1 1 1 264070000 165390000 98682000 6572 1329;1330 6125 35583;35584;35585;35586;35587 42688;42689;42690 42689 1783 3 GGDLMAYDRR Unmodified 1152.5346 0.53459117 1329;1330 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 1 By MS/MS By MS/MS 4 0.816 1 1 1 1 2 33.093 33.055 3 5.2369E-05 7839 20211116_3431_TMUAki_TMT10x_P_F4 93.058 65.316 1148700 2006000 10158 1997300 1285900 954070 1195300 951480 1022300 1000200 1533800 1069600 1871800 104390 2022600 1231200 1036200 1211800 968980 1065700 974810 1463800 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1148700 2006000 10158 1997300 1285900 954070 1195300 951480 1022300 1000200 1533800 1069600 1871800 104390 2022600 1231200 1036200 1211800 968980 1065700 974810 1463800 3 3 2 3 3 3 3 3 3 3 3 28960000 0 28960000 6573 1329;1330 6125 35588;35589;35590 42691;42692;42693;42694 42691 4 GGEIQPVSVK Unmodified 1012.5553 0.55530983 1316 P61604 HSPE1 10 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 39.65 39.769 2 6.9545E-07 9532 20211116_3444_TMUAki_TMT10x_S_F5 157.78 96.804 3545800 5880500 5952.2 6685700 5537400 4397200 4121400 3717000 3979300 2869000 4702100 3301200 5490100 287030 6729500 5271600 4605400 4250100 3788200 4080200 2836900 4513600 3 3 1 3 3 3 3 3 3 3 3 1507800 2459300 5952.2 2867400 3477900 3099900 1906200 1695800 1882700 1278600 2096800 1403900 2296300 158140 2899900 3295600 3112100 2015000 1782500 1924000 1265900 2016100 1 1 1 1 1 1 1 1 1 1 1 2038000 3421200 0 3818300 2059500 1297300 2215200 2021300 2096600 1590400 2605300 1897200 3193800 128880 3829600 1976000 1493300 2235200 2005700 2156200 1571000 2497500 2 2 0 2 2 2 2 2 2 2 2 243030000 131230000 111800000 6574 1316 6126 35591;35592;35593 42695;42696;42697 42697 3 GGFAVQAK Unmodified 776.41809 0.41808807 2280 Q8TDN6 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 0 0 0 0 By MS/MS 7 0 1 1 36.854 37.292 2 0.00046003 10262 20211116_3435_TMUAki_TMT10x_P_F7 155.19 80.472 371660 662110 1995.4 602360 736220 878590 525980 444240 503210 435620 542500 346070 617600 37779 622850 700750 868250 543820 473330 514320 425800 522110 1 1 1 1 1 1 1 1 1 1 1 371660 662110 1995.4 602360 736220 878590 525980 444240 503210 435620 542500 346070 617600 37779 622850 700750 868250 543820 473330 514320 425800 522110 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23027000 23027000 0 6575 2280 6127 35594 42698 42698 1 GGFCNFMHLKPISR Oxidation (M) 1678.8072 0.80720097 597 Q01081;P0DN76;Q01081-2;Q01081-4 U2AF1 Splicing factor U2AF 35 kDa subunit yes no 0 0 1 1 By MS/MS By MS/MS 3.71 1.03 1 2 2 2 3 4 43.722 43.762 4 3.4212E-06 11807 20211116_3431_TMUAki_TMT10x_P_F4 107.6 94.724 20097000 32854000 405550 36370000 31677000 33386000 19691000 34989000 33359000 29648000 30684000 18715000 30669000 1794800 36811000 30097000 34232000 21023000 35333000 33244000 29176000 29683000 9 9 8 9 9 9 9 9 9 9 9 8114300 11781000 123720 14319000 18916000 22223000 10228000 11640000 12124000 11044000 11254000 7556100 11003000 527760 14547000 17926000 21914000 10888000 12351000 12220000 10810000 10884000 4 4 3 4 4 4 4 4 4 4 4 11983000 21072000 281830 22051000 12761000 11164000 9462400 23349000 21236000 18604000 19430000 11159000 19666000 1267000 22264000 12170000 12318000 10135000 22982000 21024000 18365000 18799000 5 5 5 5 5 5 5 5 5 5 5 4332600000 2831400000 1501200000 6576 597 6128 35595;35596;35597;35598;35599;35600;35601 42699;42700;42701;42702;42703;42704;42705;42706;42707 42700 575 9 GGFCNFMHLKPISR Unmodified 1662.8123 0.81228635 597 Q01081;P0DN76;Q01081-2;Q01081-4 U2AF1 Splicing factor U2AF 35 kDa subunit yes no 0 0 0 1 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 52.685 52.839 4 3.6727E-09 14683 20211116_3444_TMUAki_TMT10x_S_F5 128.35 113.15 38487000 60720000 119000 71706000 51186000 45827000 37730000 26353000 23219000 26113000 44334000 35834000 56699000 3251900 71989000 48734000 47844000 38525000 27769000 25005000 25513000 42114000 8 8 3 8 8 8 8 8 8 8 8 16854000 25626000 71248 30103000 29155000 32580000 22274000 12558000 11362000 12223000 19289000 15692000 23929000 1538100 30431000 27780000 32588000 22615000 13769000 12318000 11951000 18362000 4 4 1 4 4 4 4 4 4 4 4 21633000 35094000 47750 41603000 22031000 13247000 15456000 13795000 11857000 13891000 25046000 20142000 32771000 1713700 41558000 20954000 15256000 15910000 14001000 12688000 13562000 23752000 4 4 2 4 4 4 4 4 4 4 4 3859700000 2032100000 1827600000 6577 597 6128 35602;35603;35604;35605;35606 42708;42709;42710;42711;42712;42713;42714;42715 42713 8 GGFGFRK Unmodified 767.40786 0.40785774 1765 Q15056-2;Q15056 EIF4H Eukaryotic translation initiation factor 4H yes no 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 36.029 35.881 3 0.034016 8705 20211116_3431_TMUAki_TMT10x_P_F4 63.642 26.622 3015300 4643000 28407 5001300 4582000 4141100 2641000 2809200 2962200 2656500 3618400 2807800 4333700 298410 5063900 4346400 4241800 2790300 2918800 3022800 2600800 3470200 3 3 3 3 3 3 3 3 3 3 3 1972800 3035000 19936 3234200 3507800 3339700 1631500 1848400 1978200 1763900 2323500 1837000 2832700 203640 3287000 3317400 3362300 1763700 1952000 2009500 1726200 2230700 2 2 2 2 2 2 2 2 2 2 2 1042500 1607900 8471 1767000 1074300 801330 1009500 960800 984060 892610 1294900 970760 1501000 94772 1777000 1029000 879500 1026600 966790 1013200 874580 1239500 1 1 1 1 1 1 1 1 1 1 1 189940000 155800000 34139000 6578 1765 6129 35607;35608;35609 42716;42717 42717 2 GGFSFGNVEPASLPSASVFVLGR Unmodified 2294.1695 0.16953153 1121 P49790;P49790-2;P49790-3 NUP153 Nuclear pore complex protein Nup153 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 79.7 79.638 3 4.522E-11 29084 20211116_3441_TMUAki_TMT10x_S_F3 105.51 84.273 3999900 5779900 89339 6562700 4581000 6714600 4938100 3769800 3796900 4438900 4573100 3725000 5396200 423020 6642000 4406900 6764900 4954900 4001500 3940200 4307700 4387500 2 2 2 2 2 2 2 2 2 2 2 2209200 3247700 53545 3512200 2252200 4423200 2321000 2142000 2188300 2512200 2556100 2057400 3031400 233670 3577900 2164500 4398600 2346600 2304000 2245100 2438300 2454400 1 1 1 1 1 1 1 1 1 1 1 1790700 2532200 35794 3050500 2328800 2291400 2617100 1627800 1608700 1926700 2017000 1667500 2364700 189350 3064100 2242300 2366300 2608300 1697500 1695100 1869400 1933000 1 1 1 1 1 1 1 1 1 1 1 1971800000 792730000 1179000000 6579 1121 6130 35610;35611 42718;42719 42719 2 GGGAFVQNSQPVAVR Unmodified 1485.7688 0.76882486 906 P33176 KIF5B Kinesin-1 heavy chain yes yes 0 0 0 0 By MS/MS By MS/MS 7.43 0.728 1 2 4 5 2 37.266 37.597 2;3 9.7925E-61 10291 20211116_3435_TMUAki_TMT10x_P_F7 303.31 274.14 1251400 1937400 3237.2 2357300 3005200 2412300 1545400 1570200 1913600 1324200 1904000 1165000 1809300 109170 2376000 2843600 2435200 1655300 1631600 1930300 1303400 1837000 7 7 2 7 7 7 7 7 7 7 7 943490 1411000 1125.3 1669300 2726800 2182800 1258000 1135000 1372400 957350 1387000 878350 1317600 85966 1692400 2576500 2168500 1356400 1201500 1391700 942320 1337500 5 5 1 5 5 5 5 5 5 5 5 307880 526350 2111.9 687950 278390 229540 287340 435200 541170 366810 516980 286650 491740 23203 683550 267030 266740 298860 430060 538580 361060 499460 2 2 1 2 2 2 2 2 2 2 2 256930000 217890000 39036000 6580 906 6131 35612;35613;35614;35615;35616;35617;35618 42720;42721;42722;42723;42724;42725;42726 42720 7 GGGALSAVAATK Unmodified 1001.5506 0.55055881 1286 P61011;P61011-2 SRP54 Signal recognition particle 54 kDa protein yes no 0 0 0 0 By MS/MS 7 0 2 2 40.879 41.482 2;3 1.2736E-14 12321 20211116_3446_TMUAki_TMT10x_S_F7 150.04 78.7 1091200 1800400 3424.8 1902400 1049300 818750 1160900 961490 1021800 937970 1436900 1015900 1680400 80496 1917400 1008300 904140 1167400 969660 1060300 917040 1373300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1091200 1800400 3424.8 1902400 1049300 818750 1160900 961490 1021800 937970 1436900 1015900 1680400 80496 1917400 1008300 904140 1167400 969660 1060300 917040 1373300 2 2 1 2 2 2 2 2 2 2 2 36575000 0 36575000 6581 1286 6132 35619;35620 42727;42728;42729 42729 3 GGGEELAQLAGVPFLGSVPLDPALMR Oxidation (M) 2609.3523 0.35232328 3331 Q9Y5Y2 NUBP2 Cytosolic Fe-S cluster assembly factor NUBP2 yes yes 0 0 1 0 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 80.962 80.97 3 0.00419 26530 20211116_3445_TMUAki_TMT10x_S_F6 46.132 31.209 3078900 4814600 39229 4301100 3673100 4170700 4085300 3190300 3084800 3508300 3817800 2867100 4490600 300150 4422200 3534700 4234900 4091400 3302700 3208100 3413300 3660200 3 3 3 3 3 3 3 3 3 3 3 827420 1353300 27131 1253100 868630 1642500 1036600 875110 843430 983340 1037200 770620 1262400 94462 1291300 838750 1632000 1036700 931720 873380 955920 994580 1 1 1 1 1 1 1 1 1 1 1 2251500 3461300 12098 3048000 2804500 2528200 3048700 2315200 2241400 2525000 2780500 2096500 3228200 205680 3130900 2695900 2602900 3054700 2371000 2334700 2457400 2665600 2 2 2 2 2 2 2 2 2 2 2 4644800000 2164000000 2480800000 6582 3331 6133 35621;35622;35623;35624;35625;35626 42730;42731;42732 42731 3286 3 GGGEELAQLAGVPFLGSVPLDPALMR Unmodified 2593.3574 0.35740865 3331 Q9Y5Y2 NUBP2 Cytosolic Fe-S cluster assembly factor NUBP2 yes yes 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 81.812 81.815 3 0.0060133 28587 20211116_3435_TMUAki_TMT10x_P_F7 43.612 34.082 958940 1484800 0 1429200 891330 1678800 1015200 925020 966050 960320 1163200 892870 1385200 0 1465600 857760 1677900 1021700 979600 991940 936450 1116000 1 1 0 1 1 1 1 1 1 1 1 958940 1484800 0 1429200 891330 1678800 1015200 925020 966050 960320 1163200 892870 1385200 0 1465600 857760 1677900 1021700 979600 991940 936450 1116000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 233280000 233280000 0 6583 3331 6133 35627;35628 42733 42733 1 GGGEEPGKLPEPAEEESQVLR Unmodified 2207.0706 0.070605346 2032 Q6ZN17 LIN28B Protein lin-28 homolog B yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 47.392 47.207 3 4.5698E-35 13191 20211116_3440_TMUAki_TMT10x_S_F2 191.44 176.55 7783500 14433000 42571 15995000 13536000 16234000 9575900 14973000 15430000 13841000 13462000 7247000 13474000 698920 16211000 12878000 16495000 10102000 15253000 15371000 13565000 13047000 7 7 2 7 7 7 7 7 7 7 7 4163100 7873100 16261 8576800 11204000 13764000 7834000 8249200 8494700 7661500 7329000 3876100 7349100 429200 8777600 10657000 13578000 8143000 8648000 8571600 7506900 7106100 4 4 1 4 4 4 4 4 4 4 4 3620400 6560100 26309 7418700 2332700 2470000 1741900 6723600 6934900 6179800 6132500 3370900 6124500 269720 7433700 2221100 2917100 1958500 6605100 6799300 6057900 5940700 3 3 1 3 3 3 3 3 3 3 3 883660000 562140000 321520000 6584 2032 6134 35629;35630;35631;35632 42734;42735;42736;42737;42738;42739;42740 42738 7 GGGELGLQWHADGR Unmodified 1451.6906 0.69057454 1895 Q4J6C6;Q4J6C6-4;Q4J6C6-3;Q4J6C6-2 PREPL Prolyl endopeptidase-like yes no 0 0 0 0 By MS/MS 4 0 1 1 41.805 42.02 3 0.01242 11532 20211116_3442_TMUAki_TMT10x_S_F4 56.65 44.089 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6585 1895 6135 35633 42741 42741 1 GGGFGGNDNFGR Unmodified 1153.4901 0.49008381 583 P09651;P09651-2 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes no 0 0 0 0 By MS/MS 4 0 1 1 36.097 36.125 2 1.3522E-18 8822 20211116_3431_TMUAki_TMT10x_P_F4 200.71 129.8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6586 583 6136 35634 42742 42742 1 GGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEK Oxidation (M) 3388.3797 0.37973241 560 P08621;P08621-2;P08621-4 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 0 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 51.178 51.042 4 9.1565E-17 14451 20211116_3428_TMUAki_TMT10x_P_F1 111.16 104.8 2244600 3791900 22609 4612200 2718300 4318000 2074000 4313900 5175400 3762700 3693600 2089900 3541300 183990 4642800 2589700 4417000 2233400 4369800 5076800 3697600 3608900 2 2 1 2 2 2 2 2 2 2 2 1173500 1768400 0 2088800 2156200 3623700 1715700 1787100 2330000 1806900 1628400 1092400 1651300 81243 2131300 2054500 3555700 1782300 1910300 2318600 1763900 1592600 1 1 0 1 1 1 1 1 1 1 1 1071100 2023500 22609 2523400 562060 694310 358290 2526800 2845400 1955800 2065200 997490 1890000 102740 2511600 535170 861320 451080 2459500 2758200 1933700 2016400 1 1 1 1 1 1 1 1 1 1 1 1309900000 868630000 441300000 6587 560 6137 35635;35636 42743;42744 42743 520 2 GGGGGQDNGLEGLGNDSR Unmodified 1658.7245 0.72445344 560 P08621;P08621-2;P08621-4 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 0 0 0 0 By MS/MS 2 0 2 2 31.662 31.71 2;3 0.0071565 6998 20211116_3440_TMUAki_TMT10x_S_F2 52.045 38.632 34271 61107 402.5 75967 39727 34054 43798 46357 53380 40878 58300 31912 57075 2140.3 75823 38219 37554 44510 46347 54060 40149 56088 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34271 61107 402.5 75967 39727 34054 43798 46357 53380 40878 58300 31912 57075 2140.3 75823 38219 37554 44510 46347 54060 40149 56088 2 2 1 2 2 2 2 2 2 2 2 959180 0 959180 6588 560 6138 35637;35638 42745;42746;42747 42746 3 GGGGNFGPGPGSNFR Unmodified 1376.6222 0.62216062 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 By MS/MS By MS/MS 5.49 2.07 4 3 2 3 4 11 16 4 14 33 33.043 33.213 2;3 9.4845E-61 8430 20211116_3447_TMUAki_TMT10x_S_F8 303.71 277.85 62708000 96799000 529290 134250000 188160000 146930000 73762000 110970000 144380000 87474000 109010000 58384000 90463000 6393600 134500000 177510000 148090000 82988000 113940000 142540000 86399000 106250000 63 63 26 63 63 63 63 63 63 63 63 39320000 59495000 314980 84633000 171070000 131090000 57804000 67958000 93391000 53665000 68048000 36607000 55609000 4609100 85259000 161160000 129260000 65658000 71853000 92552000 53001000 66428000 23 23 9 23 23 23 23 23 23 23 23 23388000 37304000 214310 49614000 17089000 15833000 15958000 43010000 50989000 33809000 40963000 21776000 34854000 1784500 49240000 16356000 18824000 17330000 42083000 49983000 33399000 39826000 40 40 17 40 40 40 40 40 40 40 40 37093000000 23839000000 13254000000 6589 772 6139 35639;35640;35641;35642;35643;35644;35645;35646;35647;35648;35649;35650;35651;35652;35653;35654;35655;35656;35657;35658;35659;35660;35661;35662;35663;35664;35665;35666;35667;35668;35669;35670;35671;35672;35673;35674;35675;35676;35677;35678;35679;35680;35681;35682;35683;35684;35685 42748;42749;42750;42751;42752;42753;42754;42755;42756;42757;42758;42759;42760;42761;42762;42763;42764;42765;42766;42767;42768;42769;42770;42771;42772;42773;42774;42775;42776;42777;42778;42779;42780;42781;42782;42783;42784;42785;42786;42787;42788;42789;42790;42791;42792;42793;42794;42795;42796;42797;42798;42799;42800;42801;42802;42803;42804;42805;42806;42807;42808;42809;42810;42811;42812;42813 42810 66 GGGGPGGGGPGGGSAGGPSQPPGGGGPGIRK Unmodified 2397.1534 0.15338097 2380 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 4 2 2 32.792 32.802 3;4 1.6903E-114 7069 20211116_3428_TMUAki_TMT10x_P_F1 280.75 267.86 713050 1076800 1657.6 1904500 2266400 1370300 941960 1112100 1828000 737080 1463400 663880 1007900 75005 1876400 2139400 1423100 1052200 1132500 1808000 735320 1423000 4 4 1 4 4 4 4 4 4 4 4 325220 444430 0 805480 1956500 1085300 550680 471770 789160 316290 624690 302760 416050 42722 800410 1840100 1074500 639460 505970 786560 315310 607710 2 2 0 2 2 2 2 2 2 2 2 387830 632390 1657.6 1099000 309920 285020 391280 640360 1038800 420800 838750 361120 591830 32282 1076000 299290 348550 412690 626560 1021400 420020 815300 2 2 1 2 2 2 2 2 2 2 2 592520000 365480000 227040000 6590 2380 6140 35686;35687;35688;35689 42814;42815;42816;42817 42814 4 GGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSR Unmodified 2873.1298 0.12980457 583 P09651 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 46.849 47.012 3 1.9012E-98 13540 20211116_3442_TMUAki_TMT10x_S_F4 267.4 265.15 3593700 6397000 14306 8916200 5137600 6835300 3734900 5337700 6127800 4744300 5137100 3345800 5978500 279480 8887000 4888300 7058100 3935900 5484900 6094200 4658000 4986200 6 6 2 6 6 6 6 6 6 6 6 1863300 3331300 9959.8 4720000 4615300 6107900 3321300 2894200 3148500 2589900 2649200 1734600 3113600 160510 4737900 4390700 6064500 3431200 3095700 3192900 2542000 2571000 3 3 1 3 3 3 3 3 3 3 3 1730400 3065700 4345.8 4196200 522290 727390 413660 2443500 2979300 2154400 2487900 1611100 2864900 118970 4149100 497570 993550 504690 2389200 2901200 2116000 2415200 3 3 1 3 3 3 3 3 3 3 3 1407300000 678160000 729150000 6591 583 6141 35690;35691;35692 42818;42819;42820;42821;42822;42823 42821 6 GGGHILPYDQPLR Unmodified 1421.7415 0.74154747 2797 Q9H3G5 CPVL Probable serine carboxypeptidase CPVL yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 39.538 39.628 3 2.3719E-06 9407 20211116_3434_TMUAki_TMT10x_P_F6 110.08 97.864 1286800 2143600 23257 2596600 2612800 2467000 1576400 1756800 1722500 1406500 1911900 1198300 2001900 146930 2615000 2480600 2505300 1657800 1811600 1752700 1388100 1838500 3 3 3 3 3 3 3 3 3 3 3 785830 1302200 19368 1640700 2112200 2049100 1076500 1150100 1129500 860420 1206800 731830 1216300 101780 1656000 2000400 2042100 1147800 1206100 1149500 852270 1161800 1 1 1 1 1 1 1 1 1 1 1 500950 841390 3889 955880 500650 417930 499900 606680 593020 546060 705100 466460 785530 45152 959020 480260 463190 510000 605490 603200 535810 676710 2 2 2 2 2 2 2 2 2 2 2 210360000 157150000 53213000 6592 2797 6142 35693;35694;35695;35696 42824;42825;42826;42827;42828 42825 5 GGGHVAQIYAIR Unmodified 1240.6677 0.66765425 1340 P62249 RPS16 40S ribosomal protein S16 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 34.079 34.073 3 3.4666E-09 7596 20211116_3428_TMUAki_TMT10x_P_F1 148.56 126.47 1448600 2403900 18312 2542700 2108300 1708400 1514200 1474900 1440300 1409200 2013400 1348900 2243600 144050 2571700 2007600 1786600 1564700 1509400 1488900 1379000 1924500 3 3 2 3 3 3 3 3 3 3 3 383420 665230 5470.6 686330 1014800 879820 562450 422350 413570 393070 593020 357050 620810 45730 701570 962000 874090 589560 451620 433620 385090 566510 1 1 1 1 1 1 1 1 1 1 1 1065200 1738700 12841 1856400 1093500 828530 951760 1052500 1026800 1016200 1420400 991840 1622800 98323 1870100 1045600 912480 975140 1057800 1055200 993940 1358000 2 2 1 2 2 2 2 2 2 2 2 164230000 81503000 82732000 6593 1340 6143 35697;35698 42829;42830;42831 42829 3 GGGLFLLAGPPASVETLGPR Unmodified 1908.0469 0.046897198 2664 Q9BTE6-2;Q9BTE6;Q9BTE6-3 AARSD1 Alanyl-tRNA editing protein Aarsd1 yes no 0 0 0 0 By MS/MS By MS/MS 1.8 0.4 1 4 3 2 78.406 78.382 2;3 8.9408E-42 25815 20211116_3440_TMUAki_TMT10x_S_F2 215.51 192.28 18754000 28941000 39956 27108000 20314000 24145000 22356000 15922000 14455000 15872000 21478000 17461000 26998000 1450300 27739000 19521000 24596000 22325000 16602000 15300000 15503000 20501000 6 6 2 6 6 6 6 6 6 6 6 6526600 10423000 0 9806600 6086400 12086000 7590300 5865900 5645100 6395000 8121900 6076000 9723700 423670 10082000 5866500 12032000 7560400 6293800 5915900 6223900 7758200 2 2 0 2 2 2 2 2 2 2 2 12227000 18518000 39956 17301000 14227000 12060000 14765000 10056000 8809600 9476500 13356000 11385000 17274000 1026700 17657000 13654000 12564000 14764000 10308000 9384200 9279100 12743000 4 4 2 4 4 4 4 4 4 4 4 5347200000 3286100000 2061100000 6594 2664 6144 35699;35700;35701;35702;35703 42832;42833;42834;42835;42836;42837 42835 6 GGGLPFVIK Unmodified 886.52764 0.52763852 3181 Q9UMN6;Q9UMN6-2 KMT2B Histone-lysine N-methyltransferase 2B yes no 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 54.787 54.703 2 0.036488 16065 20211116_3436_TMUAki_TMT10x_P_F8 58.577 17.59 18416000 30638000 125890 24972000 25943000 31210000 21571000 42554000 36279000 31473000 30840000 17148000 28567000 1686700 25969000 24769000 31665000 22564000 42361000 36071000 31195000 29919000 5 5 3 5 5 5 5 5 5 5 5 4645900 7099100 45349 6073400 8190900 12705000 7070300 9865400 8796600 7652200 7824200 4326100 6620400 477090 6367500 7828400 12470000 7283700 10108000 8839000 7564700 7577900 1 1 1 1 1 1 1 1 1 1 1 13771000 23539000 80545 18899000 17752000 18505000 14501000 32688000 27483000 23821000 23016000 12822000 21947000 1209600 19602000 16941000 19195000 15281000 32254000 27232000 23630000 22341000 4 4 2 4 4 4 4 4 4 4 4 677320000 206550000 470770000 6595 3181 6145 35704;35705;35706 42838;42839;42840;42841;42842 42838 5 GGGNQVSLLNVVMDLKK Unmodified 1770.9662 0.96620404 1735 Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 0 1 By MS/MS By matching 2.67 0.471 1 2 2 1 78.033 77.955 3 1.7815E-07 27423 20211116_3430_TMUAki_TMT10x_P_F3 105.89 90.498 10319000 14789000 74985 13314000 9850100 14762000 12256000 8434400 7283400 8246700 12913000 9608300 13794000 918810 13708000 9509800 14807000 12152000 8889200 7826900 8061900 12282000 1 1 1 1 1 1 1 1 1 1 1 10319000 14789000 74985 13314000 9850100 14762000 12256000 8434400 7283400 8246700 12913000 9608300 13794000 918810 13708000 9509800 14807000 12152000 8889200 7826900 8061900 12282000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2278500000 1090700000 1187800000 6596 1735 6146 35707;35708;35709 42843 42843 1 GGGNQVSLLNVVMDLKK Oxidation (M) 1786.9611 0.96111866 1735 Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 1 1 By matching By MS/MS 1.5 0.5 1 1 1 1 74.348 74.313 3 0.0002483 24168 20211116_3440_TMUAki_TMT10x_S_F2 72.446 50.573 9043300 15108000 113160 12902000 11641000 10166000 9725600 13135000 11080000 12133000 12465000 8420700 14089000 846500 13277000 11117000 10592000 10007000 13175000 11262000 11891000 11982000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9043300 15108000 113160 12902000 11641000 10166000 9725600 13135000 11080000 12133000 12465000 8420700 14089000 846500 13277000 11117000 10592000 10007000 13175000 11262000 11891000 11982000 2 2 1 2 2 2 2 2 2 2 2 1073800000 405290000 668480000 6597 1735 6146 35710;35711 42844;42845 42844 2333 2 GGGQEERPFVAR Unmodified 1301.6476 0.64764709 2849 Q9HA64 FN3KRP Ketosamine-3-kinase yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 28.845 28.676 3 0.00017651 8568 20211116_3441_TMUAki_TMT10x_S_F3 91.093 59.615 372850 588300 12815 580840 558240 556390 437730 313900 387810 333660 486820 347260 548920 45451 592710 533010 562870 448770 331980 400220 325060 466550 2 2 2 2 2 2 2 2 2 2 2 181700 281880 9545 280430 365850 346280 213890 147030 191130 160790 225920 169250 263020 26539 287180 347550 344230 224200 159960 196670 156470 216860 1 1 1 1 1 1 1 1 1 1 1 191160 306430 3269.6 300400 192390 210100 223840 166870 196680 172870 260900 178010 285910 18913 305540 185460 218640 224570 172020 203550 168590 249690 1 1 1 1 1 1 1 1 1 1 1 17145000 7413800 9731500 6598 2849 6147 35712;35713;35714 42846;42847 42847 2 GGGQIIPTAR Unmodified 968.54033 0.54032847 653;1757 P13639;Q15029;Q15029-2;Q15029-3 EEF2;EFTUD2 Elongation factor 2;116 kDa U5 small nuclear ribonucleoprotein component no no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 33.944 34.008 2 0.00039258 6953 20211116_3444_TMUAki_TMT10x_S_F5 110.76 84.93 2773800 4354800 11635 4450500 5169100 4778800 3289900 2793300 2762500 2465600 3457300 2582800 4063900 271790 4538400 4909700 4803400 3419000 2930400 2858100 2421500 3313700 2 2 1 2 2 2 2 2 2 2 2 2397900 3735000 11635 3819300 4811100 4485900 2879600 2442600 2411700 2158700 2964900 2232700 3485400 243440 3900400 4565300 4482900 3007400 2578100 2493600 2120000 2843000 1 1 1 1 1 1 1 1 1 1 1 375970 619880 0 631150 358020 292870 410250 350680 350800 306910 492490 350050 578460 28349 638020 344430 320520 411560 352320 364500 301540 470700 1 1 0 1 1 1 1 1 1 1 1 206750000 139800000 66948000 6599 653;1757 6148 35715;35716 42848;42849 42849 2 GGGVGGFLPAMK Unmodified 1089.5641 0.56410038 3285 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog yes yes 0 0 0 0 By MS/MS 2 0 1 1 61.542 61.263 2 0.00015037 20196 20211116_3429_TMUAki_TMT10x_P_F2 86.833 62.498 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6600 3285 6149 35717 42850 42850 1 GGGVGGFLPAMK Oxidation (M) 1105.559 0.559015 3285 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog yes yes 0 0 1 0 By MS/MS By MS/MS 8 0 2 1 1 51.579 51.665 2;3 0.0011848 14270 20211116_3447_TMUAki_TMT10x_S_F8 83.265 63.478 1327100 2413600 26493 2506800 3524300 3575300 2151800 2009500 2057500 1891800 2176100 1235800 2252500 165490 2566800 3346300 3541200 2251500 2118600 2101500 1852400 2095500 1 1 1 1 1 1 1 1 1 1 1 1327100 2413600 26493 2506800 3524300 3575300 2151800 2009500 2057500 1891800 2176100 1235800 2252500 165490 2566800 3346300 3541200 2251500 2118600 2101500 1852400 2095500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 307860000 307860000 0 6601 3285 6149 35718;35719 42851;42852 42852 3250 2 GGHFYSAKPEILR Unmodified 1473.7728 0.7728476 1183 P52701;P52701-2 MSH6 DNA mismatch repair protein Msh6 yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 39.872 39.793 4 1.2233E-11 9867 20211116_3428_TMUAki_TMT10x_P_F1 149.69 126.68 3501600 5769600 72723 7094000 7479800 7395400 4439700 5298500 5631600 4522100 5303200 3260900 5388600 413800 7148000 7099900 7468200 4699300 5469700 5665400 4448500 5126000 6 6 6 6 6 6 6 6 6 6 6 2236300 3776000 49373 4520200 6438000 6417600 3428900 3500100 3638300 2890700 3332400 2082600 3526200 290260 4587200 6100400 6355200 3641900 3687700 3681300 2848300 3224100 3 3 3 3 3 3 3 3 3 3 3 1265300 1993600 23350 2573700 1041800 977800 1010900 1798300 1993300 1631400 1970800 1178300 1862400 123530 2560800 999570 1113000 1057400 1782000 1984100 1600200 1901900 3 3 3 3 3 3 3 3 3 3 3 416800000 299800000 117000000 6602 1183 6150 35720;35721;35722;35723 42853;42854;42855;42856;42857;42858 42853 6 GGHMDDGGYSMNFNMSSSR 3 Oxidation (M) 2096.7622 0.76223721 969 P38159;P38159-2;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 yes no 0 0 3 0 By MS/MS By MS/MS 3.33 1.49 1 1 1 1 2 4 2 29.388 29.318 3 1.4972E-06 6057 20211116_3431_TMUAki_TMT10x_P_F4 95.9 86.666 454590 682130 8919.4 945300 1002400 938270 542290 332590 507400 341600 560620 423320 637480 38676 945670 950060 942670 573050 368990 519600 333170 539160 7 7 3 7 7 7 7 7 7 6 7 373060 550730 8919.4 716780 910890 882030 477480 248450 363040 266690 429770 347410 514510 32544 721980 862970 874130 503450 285130 376700 259710 412520 5 5 3 5 5 5 5 5 5 5 5 81531 131400 0 228520 91543 56232 64815 84139 144360 74916 130850 75912 122970 6131.9 223690 87093 68539 69604 83862 142900 73465 126640 2 2 0 2 2 2 2 2 2 1 2 246090000 191700000 54388000 6603 969 6151 35724;35725;35726;35727;35728;35729 42859;42860;42861;42862;42863;42864;42865 42861 1225;1226;1227 7 GGHMDDGGYSMNFNMSSSR 2 Oxidation (M) 2080.7673 0.76732259 969 P38159;P38159-2;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 yes no 0 0 2 0 By MS/MS By MS/MS 4.64 1.11 1 1 3 6 3 7 7 33.325 33.343 3 7.0089E-09 7667 20211116_3431_TMUAki_TMT10x_P_F4 116.96 112.7 1474200 2098700 11906 2802900 2298000 1959300 1652700 842850 974570 811410 1689000 1372700 1960900 121490 2797000 2187400 2023000 1689200 912360 1046500 793760 1607200 15 15 6 15 15 15 15 15 15 15 15 815180 1089200 2417.1 1468500 1730900 1621900 1081100 530120 630130 496260 964310 759010 1017800 78463 1473600 1643300 1618300 1116600 593080 672640 486070 919890 4 4 1 4 4 4 4 4 4 4 4 659020 1009500 9489.1 1334400 567110 337450 571620 312730 344440 315150 724690 613650 943190 43030 1323500 544160 404710 572550 319280 373840 307690 687310 11 11 5 11 11 11 11 11 11 11 11 609090000 488720000 120380000 6604 969 6151 35730;35731;35732;35733;35734;35735;35736;35737;35738;35739;35740;35741;35742;35743 42866;42867;42868;42869;42870;42871;42872;42873;42874;42875;42876;42877;42878;42879;42880;42881 42867 1225;1226;1227 16 GGHMDDGGYSMNFNMSSSR Oxidation (M) 2064.7724 0.77240796 969 P38159;P38159-2;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 yes no 0 0 1 0 By MS/MS By MS/MS 4 0.471 1 7 1 3 6 38.439 38.552 3 1.7327E-32 10378 20211116_3442_TMUAki_TMT10x_S_F4 197.69 194.45 2724700 4402700 46354 5526800 3791500 3339200 3012300 2774400 3022500 2435100 3555700 2537100 4112400 260140 5526100 3617100 3524000 3096600 2839200 3093300 2392200 3413600 9 9 4 9 9 9 9 9 9 9 9 850230 1276800 0 1695100 1974300 1565100 1068700 735900 802390 629420 1009300 791550 1193000 74043 1697800 1869500 1583800 1123200 786880 835300 619110 967220 3 3 0 3 3 3 3 3 3 3 3 1874500 3125800 46354 3831700 1817200 1774100 1943600 2038500 2220100 1805700 2546400 1745600 2919400 186090 3828400 1747700 1940200 1973400 2052300 2258000 1773100 2446300 6 6 4 6 6 6 6 6 6 6 6 421420000 229010000 192410000 6605 969 6151 35744;35745;35746;35747;35748;35749;35750;35751;35752 42882;42883;42884;42885;42886;42887;42888;42889;42890;42891 42888 1225;1226;1227 10 GGHMDDGGYSMNFNMSSSR Unmodified 2048.7775 0.77749334 969 P38159;P38159-2;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 44.438 44.582 3 9.62E-11 12486 20211116_3442_TMUAki_TMT10x_S_F4 116.87 115.48 755090 1283000 13329 1796300 609140 527970 548740 976570 1061000 761640 1064100 703160 1199100 72981 1777300 583360 626170 575630 963830 1057100 752710 1026400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 755090 1283000 13329 1796300 609140 527970 548740 976570 1061000 761640 1064100 703160 1199100 72981 1777300 583360 626170 575630 963830 1057100 752710 1026400 1 1 1 1 1 1 1 1 1 1 1 103410000 0 103410000 6606 969 6151 35753;35754 42892;42893 42892 2 GGILITER Unmodified 857.49707 0.49706667 1027 P43246;P43246-2 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 38.587 38.694 2 0.014252 11371 20211116_3430_TMUAki_TMT10x_P_F3 78.149 32.128 264620 417920 4813.4 420690 509860 523240 317360 230630 269570 255680 327610 246420 389970 29860 430510 484330 520140 330500 250000 278390 248680 314240 1 1 1 1 1 1 1 1 1 1 1 264620 417920 4813.4 420690 509860 523240 317360 230630 269570 255680 327610 246420 389970 29860 430510 484330 520140 330500 250000 278390 248680 314240 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 45876000 20356000 25520000 6607 1027 6152 35755;35756;35757 42894;42895 42894 2 GGINLTATCPQSELDAETVK Unmodified 2103.0154 0.015398653 3234 Q9Y295 DRG1 Developmentally-regulated GTP-binding protein 1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 60.334 60.223 3 1.2272E-11 19047 20211116_3442_TMUAki_TMT10x_S_F4 122.57 105.08 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6608 3234 6153 35758 42896 42896 1 GGIVDEGALLR Unmodified 1098.6033 0.60332266 201 O43175 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 2.01 2 2 2 2 2 1 1 6 6 51.988 51.949 2 6.1723E-08 15634 20211116_3442_TMUAki_TMT10x_S_F4 143.91 97.539 123680000 207050000 1757800 225130000 174730000 188670000 138290000 167940000 180710000 163500000 190110000 115160000 193270000 11662000 227850000 166670000 193990000 143490000 171660000 182320000 159860000 183100000 11 11 7 11 11 11 11 11 11 11 11 43194000 69883000 345570 77778000 91407000 108480000 58624000 54721000 63312000 56672000 64046000 40216000 65238000 4083700 79247000 86810000 107410000 61324000 58408000 64230000 55268000 61760000 4 4 3 4 4 4 4 4 4 4 4 80485000 137170000 1412200 147350000 83321000 80192000 79666000 113210000 117400000 106830000 126070000 74947000 128030000 7578600 148600000 79857000 86579000 82168000 113250000 118090000 104600000 121350000 7 7 4 7 7 7 7 7 7 7 7 16288000000 8648200000 7640000000 6609 201 6154 35759;35760;35761;35762;35763;35764;35765;35766;35767;35768;35769;35770 42897;42898;42899;42900;42901;42902;42903;42904;42905;42906;42907;42908;42909;42910 42907 14 GGIVGMTLPIAR Oxidation (M) 1199.6696 0.66962808 2598 Q99714;Q99714-2 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 0 0 1 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 51.004 50.933 2 1.0139E-06 14351 20211116_3428_TMUAki_TMT10x_P_F1 122.44 103.7 21490000 37532000 291080 39230000 27852000 33006000 22509000 32064000 33592000 28855000 31467000 20010000 35028000 1987300 39808000 26579000 33987000 23455000 32552000 33613000 28313000 30421000 6 6 3 6 6 6 6 6 6 6 6 9408300 15884000 110050 16801000 16158000 20947000 11664000 13307000 13968000 12205000 13237000 8760400 14825000 914350 17137000 15383000 20912000 12137000 13882000 14084000 11966000 12792000 2 2 1 2 2 2 2 2 2 2 2 12082000 21648000 181030 22429000 11693000 12058000 10846000 18757000 19623000 16649000 18230000 11250000 20203000 1073000 22671000 11196000 13074000 11317000 18670000 19530000 16347000 17629000 4 4 2 4 4 4 4 4 4 4 4 3293400000 1743900000 1549400000 6610 2598 6155 35771;35772;35773;35774 42911;42912;42913;42914;42915;42916 42911 2835 6 GGIVGMTLPIAR Unmodified 1183.6747 0.67471346 2598 Q99714;Q99714-2 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 63.559 63.246 2 7.8415E-14 21473 20211116_3430_TMUAki_TMT10x_P_F3 179.81 125.84 23501000 39340000 350370 40683000 27282000 27790000 26671000 16269000 14371000 16930000 26041000 21884000 36713000 2327900 41215000 26166000 28847000 26705000 17143000 15573000 16508000 24760000 4 4 4 4 4 4 4 4 4 4 4 12399000 20641000 183150 20882000 14809000 19094000 15295000 8842300 8036800 8949000 13836000 11546000 19261000 1232400 21260000 14223000 19332000 15264000 9510800 8699500 8735700 13167000 2 2 2 2 2 2 2 2 2 2 2 11102000 18699000 167220 19800000 12473000 8696100 11376000 7427200 6334400 7981200 12206000 10338000 17452000 1095500 19956000 11943000 9515500 11441000 7632100 6873100 7772100 11593000 2 2 2 2 2 2 2 2 2 2 2 2501100000 1415800000 1085300000 6611 2598 6155 35775;35776;35777;35778 42917;42918;42919;42920 42918 4 GGIVSQVK Unmodified 786.45995 0.45995289 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 35.598 35.806 2 0.0090602 7661 20211116_3434_TMUAki_TMT10x_P_F6 84.743 22.085 224770 360670 0 404240 452120 421540 274280 193100 229710 199160 282620 209270 336700 20886 409580 428980 423230 286130 208040 237520 194260 271000 1 1 0 1 1 1 1 1 1 1 1 224770 360670 0 404240 452120 421540 274280 193100 229710 199160 282620 209270 336700 20886 409580 428980 423230 286130 208040 237520 194260 271000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34502000 34502000 0 6612 769 6156 35779;35780 42921 42921 1 GGKDVAIEIEER Unmodified 1314.6779 0.67794416 1661 Q13769 THOC5 THO complex subunit 5 homolog yes yes 0 0 0 1 By MS/MS 3.5 0.5 1 1 2 40.86 40.558 3 0.00096006 13267 20211116_3441_TMUAki_TMT10x_S_F3 79.022 36.233 920380 1696300 13813 1425500 1173100 992860 968030 1441700 1495600 1310600 1502600 857060 1581800 92718 1466900 1120500 1048200 1009000 1439200 1498700 1285400 1449300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 920380 1696300 13813 1425500 1173100 992860 968030 1441700 1495600 1310600 1502600 857060 1581800 92718 1466900 1120500 1048200 1009000 1439200 1498700 1285400 1449300 1 1 1 1 1 1 1 1 1 1 1 77179000 0 77179000 6613 1661 6157 35781;35782 42922;42923 42922 2 GGKPEPPAMPQPVPTA Oxidation (M) 1588.7919 0.79192806 783 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 1 1 By MS/MS By MS/MS 5.5 0.957 2 4 4 2 5 7 37.979 38.16 2;3 0.0018628 10693 20211116_3433_TMUAki_TMT10x_P_F5 74.392 64.161 8456800 13290000 103080 17088000 18183000 17293000 11258000 13011000 15049000 9569500 13150000 7874100 12415000 831410 17167000 17260000 17508000 11899000 13342000 15077000 9487800 12745000 19 19 9 19 19 19 19 19 19 19 19 5616400 8367500 66013 11077000 15733000 15097000 8909600 8940300 10143000 6229900 8571100 5229300 7817900 588470 11169000 14913000 14993000 9432400 9319400 10209000 6196100 8316900 8 8 1 8 8 8 8 8 8 8 8 2840400 4922700 37068 6010700 2449600 2196200 2348400 4071200 4906100 3339500 4579300 2644800 4597400 242940 5998000 2347100 2514800 2466600 4022800 4867600 3291700 4427600 11 11 8 11 11 11 11 11 11 11 11 3318600000 2257800000 1060800000 6614 783 6158 35783;35784;35785;35786;35787;35788;35789;35790;35791;35792;35793;35794 42924;42925;42926;42927;42928;42929;42930;42931;42932;42933;42934;42935;42936;42937;42938;42939;42940;42941;42942 42928 922 19 GGKPEPPAMPQPVPTA Unmodified 1572.797 0.79701344 783 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 1 By MS/MS By MS/MS 5.89 0.994 1 2 3 3 6 3 49.393 49.641 2;3 0.00086128 13170 20211116_3434_TMUAki_TMT10x_P_F6 65.172 49.633 63378000 100030000 3283900 111750000 86118000 116560000 75534000 99007000 90108000 91703000 96487000 59036000 93386000 8633500 113250000 82507000 118060000 77622000 101330000 91258000 89863000 92880000 12 12 12 12 12 12 12 12 12 12 12 42968000 67134000 2263700 74881000 68784000 101070000 59685000 70406000 64078000 60967000 64675000 40025000 62672000 6033600 76236000 65862000 100660000 61153000 72850000 65017000 59933000 62371000 8 8 8 8 8 8 8 8 8 8 8 20410000 32899000 1020200 36869000 17334000 15489000 15848000 28601000 26030000 30735000 31812000 19011000 30713000 2599900 37012000 16645000 17393000 16469000 28481000 26241000 29930000 30509000 4 4 4 4 4 4 4 4 4 4 4 5856100000 3735700000 2120400000 6615 783 6158 35795;35796;35797;35798;35799;35800;35801;35802;35803 42943;42944;42945;42946;42947;42948;42949;42950;42951;42952;42953;42954;42955 42946 13 GGKPGLTIQAPQLEVSVPSANIEGLEGK Unmodified 2788.4971 0.49707326 1555 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 1 By MS/MS 8 0 1 1 73.576 73.418 3 1.0442E-05 23182 20211116_3447_TMUAki_TMT10x_S_F8 64.423 56.977 529090 1016900 35412 689540 1086800 854990 830690 593650 468530 666630 802050 492900 947650 84679 729040 1037800 854930 844780 618950 504330 648060 763390 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 529090 1016900 35412 689540 1086800 854990 830690 593650 468530 666630 802050 492900 947650 84679 729040 1037800 854930 844780 618950 504330 648060 763390 1 1 1 1 1 1 1 1 1 1 1 660850000 0 660850000 6616 1555 6159 35804 42956 42956 1 GGLASLAK Unmodified 715.42284 0.4228391 2385 Q92994;Q92994-9;Q92994-3;Q92994-7;Q92994-8;Q92994-5 BRF1 Transcription factor IIIB 90 kDa subunit yes no 0 0 0 0 By MS/MS 7 0 1 1 38.859 39.297 2 0.0028019 11056 20211116_3435_TMUAki_TMT10x_P_F7 105.12 11.002 2446900 4012500 0 4464000 6441200 5685500 3552700 2876600 3451900 2802500 3892900 2278200 3745800 251860 4540400 6103000 5653600 3751600 3064300 3531800 2740100 3741700 1 1 0 1 1 1 1 1 1 1 1 2446900 4012500 0 4464000 6441200 5685500 3552700 2876600 3451900 2802500 3892900 2278200 3745800 251860 4540400 6103000 5653600 3751600 3064300 3531800 2740100 3741700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 84878000 84878000 0 6617 2385 6160 35805 42957 42957 1 GGLGLILK Unmodified 769.50617 0.5061748 362 O75832 PSMD10 26S proteasome non-ATPase regulatory subunit 10 yes yes 0 0 0 0 By MS/MS 2 0 1 1 62.418 62.139 2 0.0031013 20554 20211116_3429_TMUAki_TMT10x_P_F2 99.919 22.171 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6618 362 6161 35806 42958 42958 1 GGLGLILKR Unmodified 925.60729 0.60728582 362 O75832 PSMD10 26S proteasome non-ATPase regulatory subunit 10 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0 3 1 2 49.085 49.265 3 1.1778E-05 14271 20211116_3433_TMUAki_TMT10x_P_F5 113.7 31.246 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6619 362 6162 35807;35808;35809 42959;42960;42961 42959 3 GGLGYVEETSEFEAR Unmodified 1642.7475 0.74748029 3135 Q9UIG0;Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B yes no 0 0 0 0 By MS/MS By MS/MS 1.4 0.49 3 2 2 3 55.474 55.263 2;3 4.1774E-51 18285 20211116_3439_TMUAki_TMT10x_S_F1 280.17 250.7 19948000 33586000 38743 32692000 23538000 30216000 21079000 37183000 35049000 33662000 29982000 18572000 31336000 1537900 33378000 22497000 31091000 21942000 37348000 34865000 33021000 29079000 8 8 3 8 8 8 8 8 8 8 8 8840100 14455000 2507.6 14140000 11684000 19660000 11762000 14978000 14444000 13597000 12078000 8230000 13487000 644640 14530000 11197000 19582000 12009000 15423000 14493000 13337000 11724000 3 3 1 3 3 3 3 3 3 3 3 11108000 19131000 36235 18552000 11855000 10556000 9317100 22206000 20605000 20065000 17904000 10342000 17849000 893280 18847000 11301000 11509000 9932900 21925000 20372000 19684000 17355000 5 5 2 5 5 5 5 5 5 5 5 2327300000 1245500000 1081800000 6620 3135 6163 35810;35811;35812;35813;35814 42962;42963;42964;42965;42966;42967;42968;42969 42967 8 GGLQEVAEQLELER Unmodified 1569.7999 0.79985021 3137 Q9UIV1;Q9UIV1-2 CNOT7 CCR4-NOT transcription complex subunit 7 yes no 0 0 0 0 By MS/MS 2 0 1 1 69.976 69.814 3 0.0029055 22373 20211116_3440_TMUAki_TMT10x_S_F2 65.421 53.135 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6621 3137 6164 35815 42970 42970 1 GGLQQPPHLPAGPHAHSPVPPGIK Unmodified 2388.2815 0.28148202 2449 Q96EV2 RBM33 RNA-binding protein 33 yes yes 0 0 0 0 By matching By MS/MS 1.67 0.471 1 2 2 1 40.258 40.192 5 3.6858E-05 10111 20211116_3440_TMUAki_TMT10x_S_F2 70.315 59.976 341650 566620 0 591540 317550 308360 335010 448280 492080 419420 449110 318100 528810 25636 597470 304770 334750 343770 447850 492210 410820 434570 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 341650 566620 0 591540 317550 308360 335010 448280 492080 419420 449110 318100 528810 25636 597470 304770 334750 343770 447850 492210 410820 434570 1 1 0 1 1 1 1 1 1 1 1 177230000 135380000 41858000 6622 2449 6165 35816;35817;35818 42971 42971 1 GGLSDGEGPPGGRGEAQR Unmodified 1695.7925 0.79247343 2051 Q7L0J3;Q7L0J3-2 SV2A Synaptic vesicle glycoprotein 2A yes no 0 0 0 1 By MS/MS By matching 2.5 0.5 1 1 1 1 28.055 27.794 3 0.0019357 6696 20211116_3429_TMUAki_TMT10x_P_F2 61.477 47.732 42181 62685 3722.5 73789 70280 74694 44007 34725 40161 47413 54062 39302 58533 7359.8 74506 66953 75139 45893 37703 41518 45783 51721 1 1 1 1 1 1 1 1 1 1 1 42181 62685 3722.5 73789 70280 74694 44007 34725 40161 47413 54062 39302 58533 7359.8 74506 66953 75139 45893 37703 41518 45783 51721 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7847300 3446800 4400600 6623 2051 6166 35819;35820 42972 42972 1 GGLVSDAYGEDDFSR Unmodified 1586.6849 0.68488004 3122 Q9UHR5;Q9UHR5-2 SAP30BP SAP30-binding protein yes no 0 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 52.091 51.829 2 2.5594E-116 17882 20211116_3441_TMUAki_TMT10x_S_F3 381.24 361.03 5214800 8986300 2678.4 10057000 5950300 7081600 4801300 7535900 7769200 6893200 7604300 4855100 8389200 386950 10140000 5672900 7408000 5022100 7619800 7768100 6758700 7340700 4 4 1 4 4 4 4 4 4 4 4 1657600 2833500 0 3081100 3167800 4393200 2645400 2452500 2487800 2143800 2281100 1543200 2644800 141330 3145400 3023100 4351000 2705800 2582200 2530500 2106500 2206900 1 1 0 1 1 1 1 1 1 1 1 3557300 6152800 2678.4 6976000 2782500 2688300 2155800 5083400 5281400 4749400 5323200 3311900 5744300 245620 6994400 2649700 3057000 2316300 5037600 5237600 4652300 5133800 3 3 1 3 3 3 3 3 3 3 3 623370000 391440000 231920000 6624 3122 6167 35821;35822;35823;35824 42973;42974;42975;42976;42977 42976 5 GGMPCMGTFLLHQGIQR 2 Oxidation (M) 1933.8961 0.89609234 1560 Q12756;Q12756-3;Q12756-2 KIF1A Kinesin-like protein KIF1A yes no 0 0 2 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 41.638 41.596 3 4.7931E-06 12659 20211116_3439_TMUAki_TMT10x_S_F1 98.682 81.618 1022400 1679600 27829 2229300 1396400 1358100 936930 1801000 2076200 1389200 1729200 952100 1569300 112300 2222400 1328800 1447200 1009700 1796400 2050000 1373700 1678800 4 4 3 4 4 4 4 4 4 4 4 312130 468670 12224 603150 839610 813400 460390 470980 585240 355920 462740 290710 437820 44658 608960 796270 807970 490690 492700 585570 352350 450180 1 1 1 1 1 1 1 1 1 1 1 710240 1210900 15604 1626100 556740 544670 476550 1330000 1491000 1033300 1266500 661390 1131500 67645 1613400 532520 639230 518980 1303700 1464400 1021400 1228700 3 3 2 3 3 3 3 3 3 3 3 287210000 133900000 153320000 6625 1560 6168 35825;35826;35827 42978;42979;42980;42981 42980 2102;2103 4 GGMVLLR Oxidation (M) 760.42654 0.42654427 3361 yes yes 0 0 1 0 By MS/MS 7.25 0.829 1 1 2 4 40.356 40.672 2 0.033582 9748 20211116_3447_TMUAki_TMT10x_S_F8 84.609 17.233 + 6369000 9973300 100330 10912000 6963800 6050100 6692800 6803000 6447100 6404600 8403600 5930700 9309700 601830 10993000 6674600 6480300 6795300 6866900 6639000 6271500 8046100 5 5 2 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6369000 9973300 100330 10912000 6963800 6050100 6692800 6803000 6447100 6404600 8403600 5930700 9309700 601830 10993000 6674600 6480300 6795300 6866900 6639000 6271500 8046100 5 5 2 5 5 5 5 5 5 5 5 742900000 0 742900000 6626 3361 6169 35828;35829;35830;35831 42982 42982 3300 1 GGNFGFGDSR Unmodified 1012.4363 0.43625733 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 By MS/MS By MS/MS 4.77 1.89 2 2 2 2 2 2 1 6 7 38.933 39.037 2 3.8054E-12 8985 20211116_3434_TMUAki_TMT10x_P_F6 218.04 185.11 22412000 30218000 6719.7 45179000 80832000 40032000 25604000 32605000 39461000 23141000 37570000 20866000 28252000 2472800 44956000 76104000 40932000 29288000 33242000 39471000 22990000 36301000 14 14 3 14 14 14 14 14 14 14 14 14590000 19122000 5823.2 28396000 73817000 34238000 18336000 20998000 25070000 14239000 23494000 13583000 17877000 1859100 28400000 69373000 34221000 21709000 21815000 25154000 14185000 22712000 8 8 2 8 8 8 8 8 8 8 8 7822300 11096000 896.46 16783000 7014400 5793700 7267900 11608000 14391000 8901900 14076000 7283200 10375000 613680 16556000 6730600 6710800 7579400 11428000 14317000 8805500 13589000 6 6 1 6 6 6 6 6 6 6 6 8756300000 5655800000 3100500000 6627 772 6170 35832;35833;35834;35835;35836;35837;35838;35839;35840;35841;35842;35843;35844 42983;42984;42985;42986;42987;42988;42989;42990;42991;42992;42993;42994;42995;42996;42997 42989 15 GGNFGGR Unmodified 663.30887 0.30887197 583;1168;1169 P51991;P09651;P09651-2;P09651-3;Q32P51;P51991-2 HNRNPA3;HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A3;Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 no no 0 0 0 0 By MS/MS 5 0 1 1 26.091 26.015 2 0.013631 5122 20211116_3433_TMUAki_TMT10x_P_F5 94.777 41.679 209550 330270 0 256590 204160 352120 226970 183870 224220 173510 212790 195070 307900 12088 268400 195990 349040 228940 195130 227820 169890 205630 1 1 0 1 1 1 1 1 1 1 1 209550 330270 0 256590 204160 352120 226970 183870 224220 173510 212790 195070 307900 12088 268400 195990 349040 228940 195130 227820 169890 205630 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5102500 5102500 0 6628 1168;583;1169 6171 35845 42998 42998 1 GGNLRDKLDGNELDLSLSDLNEVPVK Unmodified 2809.4458 0.44576597 2409 Q96AG4 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 0 0 0 2 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 72.796 72.863 4 7.1355E-12 24750 20211116_3435_TMUAki_TMT10x_P_F7 108.57 96.141 30647000 51335000 473180 48065000 39769000 33676000 34385000 23777000 24044000 20749000 34605000 28537000 47889000 2834700 49050000 38007000 34972000 34840000 24584000 25287000 20389000 33055000 5 5 1 5 5 5 5 5 5 5 5 13774000 21424000 0 19900000 11563000 18593000 13267000 10814000 10634000 9914400 14850000 12823000 19985000 941460 20389000 11119000 18847000 13287000 11361000 11083000 9720000 14195000 3 3 0 3 3 3 3 3 3 3 3 16874000 29911000 473180 28165000 28205000 15083000 21118000 12963000 13410000 10834000 19755000 15714000 27904000 1893300 28660000 26888000 16125000 21553000 13223000 14205000 10669000 18861000 2 2 1 2 2 2 2 2 2 2 2 3782600000 2639200000 1143400000 6629 2409 6172 35846;35847;35848 42999;43000;43001;43002;43003 43000 5 GGNRFEPYANPTKR Unmodified 1605.8012 0.80118762 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 2 By MS/MS 2 0 1 1 31.835 31.611 4 0.00020828 8146 20211116_3429_TMUAki_TMT10x_P_F2 88.768 2.3009 1384700 2037300 42052 2426800 6373300 5646300 2227800 5194900 4916600 2737100 3428200 1289600 1902500 223860 2496400 6009300 5543300 2559800 5231000 4831300 2774400 3353200 1 1 1 1 1 1 1 1 1 1 1 1384700 2037300 42052 2426800 6373300 5646300 2227800 5194900 4916600 2737100 3428200 1289600 1902500 223860 2496400 6009300 5543300 2559800 5231000 4831300 2774400 3353200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 558010000 558010000 0 6630 1171 6173 35849 43004 43004 1 GGPEVQQVPAGERPLWFICSGMGTQWR Oxidation (M) 3058.4542 0.45417936 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 1 1 By MS/MS 1 0 1 1 69.049 69.049 3 1.6632E-06 21815 20211116_3428_TMUAki_TMT10x_P_F1 80.847 71.22 3237000 5025800 0 4868300 3129600 3945900 4144400 1026900 1030500 1504700 2941600 3013700 4689000 237130 4963800 3024400 4011100 4054400 1205700 1252400 1449900 2778500 2 2 0 2 2 2 2 2 2 2 2 3237000 5025800 0 4868300 3129600 3945900 4144400 1026900 1030500 1504700 2941600 3013700 4689000 237130 4963800 3024400 4011100 4054400 1205700 1252400 1449900 2778500 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 806380000 806380000 0 6631 1092 6174 35850 43005;43006 43005 1424 2 GGPEVQQVPAGERPLWFICSGMGTQWR Unmodified 3042.4593 0.45926474 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 1 By MS/MS 2 0 1 1 76.209 76.102 3 1.5285E-08 26182 20211116_3429_TMUAki_TMT10x_P_F2 83.236 75.524 9884700 14572000 0 16849000 9890700 11556000 12726000 5087300 4575200 6527200 9382300 9201900 13606000 602510 16949000 9540800 11954000 12508000 5542000 5181700 6315500 8902000 2 2 0 2 2 2 2 2 2 2 2 9884700 14572000 0 16849000 9890700 11556000 12726000 5087300 4575200 6527200 9382300 9201900 13606000 602510 16949000 9540800 11954000 12508000 5542000 5181700 6315500 8902000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 792700000 792700000 0 6632 1092 6174 35851 43007;43008 43008 2 GGPGGELPR Unmodified 838.42972 0.42971539 1511 Q04637;Q04637-3;Q04637-8;Q04637-5;Q04637-4;Q04637-9;Q04637-6;Q04637-7 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 0 By MS/MS 2 0 1 1 30.837 30.611 2 0.10815 7787 20211116_3429_TMUAki_TMT10x_P_F2 43.769 14.196 324230 491800 6844 438560 493110 600220 375610 286020 326810 283810 388690 301940 458700 35625 453580 470280 594430 385630 306590 336800 277280 373040 1 1 1 1 1 1 1 1 1 1 1 324230 491800 6844 438560 493110 600220 375610 286020 326810 283810 388690 301940 458700 35625 453580 470280 594430 385630 306590 336800 277280 373040 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11378000 11378000 0 6633 1511 6175 35852 43009 43009 1 GGPGGPGGPGGPMGR Oxidation (M) 1222.5513 0.55130386 1489 Q01844;Q01844-6;Q01844-3;Q01844-5;Q01844-2 EWSR1 RNA-binding protein EWS yes no 0 0 1 0 By MS/MS 5 0 1 1 27.424 27.351 2 0.001432 5649 20211116_3433_TMUAki_TMT10x_P_F5 67.993 62.405 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6634 1489 6176 35853 43010 43010 2022 1 GGPGPGPGPYHR Unmodified 1147.5523 0.55229014 2540 Q96QC0 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 yes yes 0 0 0 0 By MS/MS 5 0 1 1 26.79 26.716 3 3.2902E-08 5399 20211116_3433_TMUAki_TMT10x_P_F5 118.03 99.303 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6635 2540 6177 35854 43011 43011 1 GGPGSTLSFVGK Unmodified 1105.5768 0.57677356 2623 Q9BQ61 C19orf43 Uncharacterized protein C19orf43 yes yes 0 0 0 0 By MS/MS 1 0 1 1 53.065 53.065 2 3.4031E-05 15270 20211116_3428_TMUAki_TMT10x_P_F1 99.257 67.885 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6636 2623 6178 35855 43012 43012 1 GGPGSTLSFVGKR Unmodified 1261.6779 0.67788459 2623 Q9BQ61 C19orf43 Uncharacterized protein C19orf43 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0 2 1 1 40.782 40.837 3 0.00023124 13760 20211116_3441_TMUAki_TMT10x_S_F3 81.803 64.635 763310 1103200 11452 1345700 1521200 1365600 874990 663810 731420 637420 917550 710800 1030300 84571 1356000 1443000 1374200 916890 709550 756980 623630 879370 2 2 2 2 2 2 2 2 2 2 2 763310 1103200 11452 1345700 1521200 1365600 874990 663810 731420 637420 917550 710800 1030300 84571 1356000 1443000 1374200 916890 709550 756980 623630 879370 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31413000 31413000 0 6637 2623 6179 35856;35857 43013;43014;43015 43015 3 GGPISFSSSR Unmodified 993.48796 0.48795855 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS 7 0 1 1 35.893 36.328 2 0.0018529 9913 20211116_3435_TMUAki_TMT10x_P_F7 83.429 72.06 140840 240990 3454.1 208590 356420 498860 265690 425650 400540 351720 286320 131160 224750 17915 219420 339680 488650 278420 434260 397520 346550 279740 1 1 1 1 1 1 1 1 1 1 1 140840 240990 3454.1 208590 356420 498860 265690 425650 400540 351720 286320 131160 224750 17915 219420 339680 488650 278420 434260 397520 346550 279740 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9060900 9060900 0 6638 935 6180 35858 43016 43016 1 GGPLPEPRPLMAEPR Oxidation (M) 1631.8454 0.84536062 907 P33240;P33240-2 CSTF2 Cleavage stimulation factor subunit 2 yes no 0 0 1 1 By MS/MS 5 0 1 1 37.914 37.903 3 0.016762 9883 20211116_3433_TMUAki_TMT10x_P_F5 52.5 36.363 2383900 4234000 12893 4903100 7237100 6356400 4047600 4318700 4374800 3140500 3968100 2219500 3953300 240330 4976500 6857500 6340100 4282600 4458600 4421800 3115700 3840500 2 2 1 2 2 2 2 2 2 2 2 2383900 4234000 12893 4903100 7237100 6356400 4047600 4318700 4374800 3140500 3968100 2219500 3953300 240330 4976500 6857500 6340100 4282600 4458600 4421800 3115700 3840500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 224380000 224380000 0 6639 907 6181 35859 43017;43018 43017 1116 2 GGPLPEPRPLMAEPR Unmodified 1615.8504 0.850446 907 P33240;P33240-2 CSTF2 Cleavage stimulation factor subunit 2 yes no 0 0 0 1 By MS/MS 5.5 0.5 1 1 2 43.359 43.437 3 0.015646 10807 20211116_3434_TMUAki_TMT10x_P_F6 52.008 31.055 3151000 4982700 34379 6291400 8626600 8142900 5350500 4557000 4198800 3783200 4822800 2934100 4654300 369970 6353500 8191300 8100700 5562900 4791000 4344100 3726700 4633100 2 2 2 2 2 2 2 2 2 2 2 3151000 4982700 34379 6291400 8626600 8142900 5350500 4557000 4198800 3783200 4822800 2934100 4654300 369970 6353500 8191300 8100700 5562900 4791000 4344100 3726700 4633100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 313180000 313180000 0 6640 907 6181 35860;35861 43019;43020 43020 2 GGPLQALTR Unmodified 911.51886 0.51886475 1007 P42167 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 42.956 43.057 2 0.034207 10771 20211116_3447_TMUAki_TMT10x_S_F8 59.052 43.471 4679800 7478600 98654 8926500 10469000 9530100 5627000 8424300 8135100 6630700 8240100 4358100 6983700 561010 9013200 9922300 9646600 6038500 8567400 8170000 6549800 7945600 2 2 2 2 2 2 2 2 2 2 2 2794800 4368400 63104 5140000 8947500 7944200 4336600 4792800 4455800 3792400 4864800 2602700 4079100 376690 5231000 8467200 7849200 4643600 5002000 4542300 3745100 4680200 1 1 1 1 1 1 1 1 1 1 1 1885000 3110200 35549 3786500 1521400 1586000 1290300 3631600 3679300 2838300 3375300 1755400 2904600 184320 3782200 1455200 1797400 1394900 3565400 3627800 2804700 3265400 1 1 1 1 1 1 1 1 1 1 1 194900000 132480000 62423000 6641 1007 6182 35862;35863 43021 43021 1 GGPNIITLADIVKDPVSR Unmodified 1864.0418 0.04181182 1419 P68400;Q8NEV1 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 0 0 0 1 By MS/MS By MS/MS 5.91 2.5 2 1 2 2 4 6 5 75.998 75.998 3;4 1.0679E-57 24164 20211116_3447_TMUAki_TMT10x_S_F8 239.75 215.46 68168000 111260000 115370 104920000 76100000 93954000 77241000 63541000 62890000 67174000 78282000 63468000 103800000 5338600 107320000 72969000 95707000 77845000 66248000 65154000 65456000 75039000 12 12 5 12 12 12 12 12 12 12 12 31496000 48750000 24537 47057000 28019000 53548000 32989000 28492000 29059000 31407000 35128000 29324000 45483000 2323400 48223000 26975000 53588000 33080000 30320000 29950000 30554000 33699000 6 6 1 6 6 6 6 6 6 6 6 36672000 62513000 90833 57866000 48081000 40406000 44252000 35050000 33832000 35767000 43154000 34144000 58314000 3015200 59100000 45994000 42120000 44765000 35928000 35205000 34903000 41341000 6 6 4 6 6 6 6 6 6 6 6 18673000000 11029000000 7643400000 6642 1419 6183 35864;35865;35866;35867;35868;35869;35870;35871;35872;35873;35874 43022;43023;43024;43025;43026;43027;43028;43029;43030;43031;43032;43033 43032 12 GGPPFAFVEFEDPRDAEDAVYGR Unmodified 2540.1608 0.16081734 1543 Q07955;Q07955-3;Q07955-2 SRSF1 Serine/arginine-rich splicing factor 1 yes no 0 0 0 1 By MS/MS By MS/MS 3.03 1.1 3 5 16 5 2 1 15 17 73.077 73.029 3 2.6913E-36 26004 20211116_3442_TMUAki_TMT10x_S_F4 185.09 166.56 115280000 184650000 1086800 179500000 126080000 162100000 144440000 111460000 114410000 125200000 138810000 107340000 172280000 9897500 183220000 121360000 165070000 144620000 116290000 118580000 121720000 133150000 34 34 22 34 34 34 34 34 34 34 34 53369000 82358000 668900 81356000 46345000 91564000 60665000 50980000 51428000 57066000 62030000 49694000 76845000 4553900 83220000 44812000 91738000 60500000 54063000 53100000 55483000 59509000 16 16 12 16 16 16 16 16 16 16 16 61916000 102290000 417860 98140000 79733000 70534000 83771000 60476000 62986000 68138000 76782000 57649000 95435000 5343600 100000000 76551000 73333000 84118000 62225000 65477000 66232000 73642000 18 18 10 18 18 18 18 18 18 18 18 50144000000 23639000000 26505000000 6643 1543 6184 35875;35876;35877;35878;35879;35880;35881;35882;35883;35884;35885;35886;35887;35888;35889;35890;35891;35892;35893;35894;35895;35896;35897;35898;35899;35900;35901;35902;35903;35904;35905;35906 43034;43035;43036;43037;43038;43039;43040;43041;43042;43043;43044;43045;43046;43047;43048;43049;43050;43051;43052;43053;43054;43055;43056;43057;43058;43059;43060;43061;43062;43063;43064;43065;43066;43067;43068;43069;43070;43071;43072;43073;43074;43075;43076;43077 43073 44 GGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYR Unmodified 3644.5757 0.57567052 1543 Q07955;Q07955-3;Q07955-2 SRSF1 Serine/arginine-rich splicing factor 1 yes no 0 0 0 2 By matching By MS/MS 2.33 0.471 2 1 1 2 77.124 77.053 4 1.8617E-06 25319 20211116_3440_TMUAki_TMT10x_S_F2 74.838 69.236 1710600 3472000 132600 2732000 3657200 2737000 2544300 2761500 2603800 3006400 2731300 1593700 3236900 292670 2839500 3486800 2788500 2640800 2813800 2650900 2926100 2630900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1710600 3472000 132600 2732000 3657200 2737000 2544300 2761500 2603800 3006400 2731300 1593700 3236900 292670 2839500 3486800 2788500 2640800 2813800 2650900 2926100 2630900 1 1 1 1 1 1 1 1 1 1 1 2537100000 950920000 1586200000 6644 1543 6185 35907;35908;35909 43078 43078 1 GGPTPQEAIQR Unmodified 1152.5887 0.58873523 2803 Q9H444 CHMP4B Charged multivesicular body protein 4b yes yes 0 0 0 0 By MS/MS 4 0 1 1 31.64 31.67 2 1.1121E-08 7056 20211116_3431_TMUAki_TMT10x_P_F4 157.49 116.92 459920 663940 0 764300 1129000 829080 536330 423180 508460 405500 630060 428120 619900 33774 773590 1066800 831490 574150 450220 522810 396760 604030 1 1 0 1 1 1 1 1 1 1 1 459920 663940 0 764300 1129000 829080 536330 423180 508460 405500 630060 428120 619900 33774 773590 1066800 831490 574150 450220 522810 396760 604030 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33725000 33725000 0 6645 2803 6186 35910 43079 43079 1 GGPTVDPEELFR Unmodified 1315.6408 0.64083038 2450 Q96EY1;Q96EY1-2 DNAJA3 DnaJ homolog subfamily A member 3, mitochondrial yes no 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 63.24 63.152 2 0.0018984 21464 20211116_3430_TMUAki_TMT10x_P_F3 78.759 55.929 8649900 13575000 42812 12849000 12442000 20037000 13449000 12707000 13288000 12623000 11635000 8054100 12664000 804800 13267000 11957000 19805000 13584000 13287000 13467000 12332000 11275000 2 2 1 2 2 2 2 2 2 2 2 8649900 13575000 42812 12849000 12442000 20037000 13449000 12707000 13288000 12623000 11635000 8054100 12664000 804800 13267000 11957000 19805000 13584000 13287000 13467000 12332000 11275000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 724930000 724930000 0 6646 2450 6187 35911;35912 43080;43081 43080 2 GGQLQEQLTQQLSQALSSAVAGR Unmodified 2369.2299 0.22989995 1995 Q6P2E9;Q6P2E9-2 EDC4 Enhancer of mRNA-decapping protein 4 yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 80.003 79.982 3 1.312E-84 29216 20211116_3441_TMUAki_TMT10x_S_F3 286.67 262.08 3875300 7143300 18357 6810800 4944100 5897100 5480600 4108400 4486200 4752300 5012600 3608100 6664200 308700 6957900 4752400 6023800 5500400 4286600 4626100 4614900 4819200 3 3 2 3 3 3 3 3 3 3 3 1215300 2114200 0 2108700 1175300 2519000 1493800 1275000 1497100 1411600 1626700 1131200 1972700 55531 2157700 1132000 2512900 1498700 1363200 1527500 1373000 1565200 1 1 0 1 1 1 1 1 1 1 1 2660000 5029100 18357 4702100 3768900 3378100 3986800 2833300 2989100 3340800 3385900 2476900 4691500 253170 4800200 3620400 3510800 4001700 2923400 3098600 3241900 3254000 2 2 2 2 2 2 2 2 2 2 2 3537600000 1058500000 2479100000 6647 1995 6188 35913;35914;35915 43082;43083;43084 43083 3 GGQLQEQLTQQLSQALSSAVAGRLER Unmodified 2767.4577 0.45766806 1995 Q6P2E9;Q6P2E9-2 EDC4 Enhancer of mRNA-decapping protein 4 yes no 0 0 0 1 By MS/MS 4 0 1 1 79.208 79.173 4 1.6009E-09 26763 20211116_3442_TMUAki_TMT10x_S_F4 101.47 86.218 2921500 4879600 0 4528900 4205100 3117400 3723800 2735800 2235700 2393300 3823200 2720100 4551800 251580 4623900 4019400 3254300 3756300 2790600 2395900 2351600 3638900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2921500 4879600 0 4528900 4205100 3117400 3723800 2735800 2235700 2393300 3823200 2720100 4551800 251580 4623900 4019400 3254300 3756300 2790600 2395900 2351600 3638900 1 1 0 1 1 1 1 1 1 1 1 381900000 0 381900000 6648 1995 6189 35916 43085 43085 1 GGQTHLGLPVFNTVK Unmodified 1566.8518 0.85182621 1202 P53597 SUCLG1 Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 54.893 54.665 3 2.7133E-07 17453 20211116_3429_TMUAki_TMT10x_P_F2 118.2 103.85 13263000 23361000 140590 25342000 15741000 16800000 13288000 16236000 14704000 13849000 17429000 12350000 21806000 1234000 25586000 15038000 17629000 13650000 16465000 14994000 13624000 16729000 3 3 2 3 3 3 3 3 3 3 3 5011400 8854300 116350 10086000 7890400 10292000 6937600 6018900 6080800 5562200 6660300 4667000 8266600 564240 10205000 7548800 10376000 7060400 6321600 6244200 5451100 6407000 1 1 1 1 1 1 1 1 1 1 1 8251300 14507000 24242 15257000 7850400 6507800 6349900 10218000 8623700 8287000 10769000 7682700 13539000 669770 15380000 7489000 7252800 6589800 10143000 8749700 8173100 10322000 2 2 1 2 2 2 2 2 2 2 2 1390000000 807420000 582550000 6649 1202 6190 35917;35918 43086;43087;43088 43086 3 GGREDMDISK Oxidation (M) 1122.4975 0.49753696 1091 P49321;P49321-3;P49321-4 NASP Nuclear autoantigenic sperm protein yes no 0 0 1 1 By MS/MS 3 0 1 1 28.287 28.004 3 0.054892 8287 20211116_3441_TMUAki_TMT10x_S_F3 46.844 9.7321 122910 205620 0 166230 127270 132680 154710 82198 91002 89568 139890 114420 191720 8258.2 171870 122590 136100 153520 86342 97101 87173 133430 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 122910 205620 0 166230 127270 132680 154710 82198 91002 89568 139890 114420 191720 8258.2 171870 122590 136100 153520 86342 97101 87173 133430 1 1 0 1 1 1 1 1 1 1 1 5951200 0 5951200 6650 1091 6191 35919 43089 43089 1417 1 GGSGSGPTIEEVD Unmodified 1203.5255 0.52552585 596 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 41.734 41.643 2 6.9611E-09 10666 20211116_3428_TMUAki_TMT10x_P_F1 128.38 105.64 2339400 3405300 22584 4146300 3697000 2567600 2132100 2093400 2317900 1738900 3493700 2178400 3180300 234010 4154000 3506800 2702500 2250300 2141800 2391700 1712900 3333900 3 3 3 3 3 3 3 3 3 3 3 1064000 1246100 2747.9 1605400 2460800 1667100 1152600 872580 997350 699990 1610900 990710 1164100 110340 1613300 2326800 1676700 1232700 922110 1043200 690760 1535000 1 1 1 1 1 1 1 1 1 1 1 1275400 2159200 19836 2540900 1236200 900500 979550 1220800 1320600 1038900 1882900 1187700 2016200 123680 2540600 1180000 1025700 1017600 1219600 1348500 1022200 1798900 2 2 2 2 2 2 2 2 2 2 2 156990000 101860000 55131000 6651 596 6192 35920;35921;35922 43090;43091;43092;43093 43090 4 GGSPFAIVITQQHQIHR Unmodified 1888.0068 0.006763718 2865 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 yes yes 0 0 0 0 By MS/MS By MS/MS 2.4 0.49 3 2 3 2 45.456 45.268 3;4 2.939E-15 13670 20211116_3429_TMUAki_TMT10x_P_F2 142.1 118.42 19066000 29366000 56691 28576000 31108000 43314000 23471000 31865000 31211000 28534000 27455000 17750000 27399000 1304200 29429000 29617000 42960000 24446000 32877000 31280000 28005000 26601000 8 8 2 8 8 8 8 8 8 8 8 13483000 19889000 39634 19252000 26312000 38794000 19653000 24305000 23947000 21819000 19889000 12552000 18557000 885050 19978000 25045000 37990000 20416000 25368000 24030000 21412000 19311000 4 4 1 4 4 4 4 4 4 4 4 5582800 9476500 17057 9323900 4796000 4520700 3818300 7560400 7264200 6715300 7566700 5197900 8842000 419180 9450900 4571900 4969900 4030800 7508200 7250100 6593300 7290000 4 4 1 4 4 4 4 4 4 4 4 2352400000 1616300000 736100000 6652 2865 6193 35923;35924;35925;35926;35927 43094;43095;43096;43097;43098;43099;43100;43101 43094 8 GGSRGEEVGELSR Unmodified 1331.643 0.64295564 581 P09543;P09543-2 CNP 2',3'-cyclic-nucleotide 3'-phosphodiesterase yes no 0 0 0 1 By MS/MS By matching 2.5 0.5 1 1 1 1 27.366 27.101 3 5.3198E-09 6526 20211116_3429_TMUAki_TMT10x_P_F2 122.78 91.555 116960 183780 0 168200 185100 180940 113990 90231 102880 84636 121730 108880 171430 8138.2 172880 175530 181500 119000 96151 105820 82890 116840 1 1 0 1 1 1 1 1 1 1 1 116960 183780 0 168200 185100 180940 113990 90231 102880 84636 121730 108880 171430 8138.2 172880 175530 181500 119000 96151 105820 82890 116840 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7830500 6686700 1143900 6653 581 6194 35928;35929 43102 43102 1 GGSTTGSQFLEQFK Unmodified 1485.71 0.70997257 1685 Q14157;Q14157-1;Q14157-4;Q14157-3;Q14157-5 UBAP2L Ubiquitin-associated protein 2-like yes no 0 0 0 0 By MS/MS By MS/MS 7 0 3 2 1 60.475 61.12 2;3 5.8031E-51 19790 20211116_3435_TMUAki_TMT10x_P_F7 286.73 243.65 27156000 45176000 0 46017000 30893000 47630000 30364000 32432000 34243000 32583000 32733000 25284000 42157000 2187200 46910000 29601000 48081000 30948000 33747000 34613000 31816000 31623000 3 3 0 3 3 3 3 3 3 3 3 20384000 33484000 0 34155000 25006000 42243000 25978000 24680000 26540000 25543000 24829000 18979000 31247000 1696900 34917000 23998000 42141000 26317000 26005000 26915000 24911000 24005000 2 2 0 2 2 2 2 2 2 2 2 6771500 11692000 0 11862000 5886900 5386700 4387000 7752100 7702400 7039800 7903700 6304500 10911000 490310 11993000 5603200 5940200 4631000 7741100 7697900 6904700 7618200 1 1 0 1 1 1 1 1 1 1 1 3730800000 3201300000 529500000 6654 1685 6195 35930;35931;35932 43103;43104;43105 43103 3 GGTFYVEPAER Unmodified 1224.5775 0.57750184 123 O14672 ADAM10 Disintegrin and metalloproteinase domain-containing protein 10 yes yes 0 0 0 0 By MS/MS 3 0 1 1 40.128 40.181 2 0.0091182 12061 20211116_3430_TMUAki_TMT10x_P_F3 64.103 50.725 580180 848430 0 1019200 1333100 1231200 618490 815470 855760 627400 794790 540080 792310 43633 1030900 1259300 1231800 672070 844470 858040 620500 768590 2 2 0 2 2 2 2 2 2 2 2 580180 848430 0 1019200 1333100 1231200 618490 815470 855760 627400 794790 540080 792310 43633 1030900 1259300 1231800 672070 844470 858040 620500 768590 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19360000 19360000 0 6655 123 6196 35933 43106;43107 43107 2 GGTIVPR Unmodified 698.40752 0.40752338 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 By MS/MS 5 0 1 1 30.368 30.301 2 0.040227 6828 20211116_3433_TMUAki_TMT10x_P_F5 74.423 74.423 630260 1126500 7927.4 974430 1020700 1174400 806180 548710 595220 550030 841090 586900 1050600 65110 1007800 973830 1170000 822430 589510 623490 537130 803760 1 1 1 1 1 1 1 1 1 1 1 630260 1126500 7927.4 974430 1020700 1174400 806180 548710 595220 550030 841090 586900 1050600 65110 1007800 973830 1170000 822430 589510 623490 537130 803760 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28234000 28234000 0 6656 1730 6197 35934 43108 43108 1 GGTLFGGEVCK Unmodified 1123.5332 0.53319418 1006 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 50.46 50.561 2 1.9832E-08 13673 20211116_3434_TMUAki_TMT10x_P_F6 155.15 111.9 2544500 3827100 34645 5553800 8573100 7031200 3744900 3592600 3502500 2735500 4455400 2369500 3577600 327680 5565900 8101000 6994600 4043500 3800600 3607600 2707000 4268500 1 1 1 1 1 1 1 1 1 1 1 2544500 3827100 34645 5553800 8573100 7031200 3744900 3592600 3502500 2735500 4455400 2369500 3577600 327680 5565900 8101000 6994600 4043500 3800600 3607600 2707000 4268500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 142020000 142020000 0 6657 1006 6198 35935;35936 43109;43110 43109 2 GGTLLSVTGEVEPR Unmodified 1413.7464 0.74635808 907 P33240;P33240-2 CSTF2 Cleavage stimulation factor subunit 2 no no 0 0 0 0 By MS/MS By MS/MS 3.57 0.728 4 2 1 3 4 54.211 54.101 2;3 2.095E-39 16041 20211116_3431_TMUAki_TMT10x_P_F4 257.54 221.02 12780000 20869000 106720 21641000 16132000 19170000 13675000 15616000 15366000 14928000 16968000 11899000 19475000 1067900 21986000 15404000 19602000 14052000 16036000 15615000 14608000 16318000 7 7 3 7 7 7 7 7 7 7 7 6321200 10136000 26234 10115000 9347200 13368000 7566500 7734300 7618800 7277300 8040200 5885000 9457900 485370 10369000 8912500 13291000 7769800 8134300 7763500 7126200 7743000 3 3 1 3 3 3 3 3 3 3 3 6458800 10733000 80491 11526000 6784700 5802600 6108700 7881400 7747000 7650800 8927500 6014100 10018000 582500 11617000 6491300 6311100 6282400 7901400 7851400 7481700 8575500 4 4 2 4 4 4 4 4 4 4 4 1966700000 1286500000 680160000 6658 907 6199 35937;35938;35939;35940;35941;35942;35943 43111;43112;43113;43114;43115;43116;43117;43118;43119 43113 9 GGTPSAFDR Unmodified 906.41954 0.41954463 1487;552 P08237;P08237-3;Q01813;Q01813-2 PFKM;PFKP ATP-dependent 6-phosphofructokinase, muscle type;ATP-dependent 6-phosphofructokinase, platelet type no no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 31.497 31.387 2 0.041641 6925 20211116_3431_TMUAki_TMT10x_P_F4 63.565 34.416 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6659 552;1487 6200 35944;35945 43120;43121 43120 2 GGTVADLDEQDEETVTAGGKEDEDPAKGDQSR Unmodified 3318.4608 0.46075992 2379 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 0 0 0 2 By MS/MS 1 0 1 1 44.298 44.298 5 2.276E-10 11708 20211116_3428_TMUAki_TMT10x_P_F1 91.407 86.718 528180 821690 0 1639100 2417600 2110800 1233900 1045200 1223800 711250 1112500 491650 769780 52197 1621500 2287200 2097300 1313200 1106500 1241500 708410 1076600 1 1 0 1 1 1 1 1 1 1 1 528180 821690 0 1639100 2417600 2110800 1233900 1045200 1223800 711250 1112500 491650 769780 52197 1621500 2287200 2097300 1313200 1106500 1241500 708410 1076600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 208350000 208350000 0 6660 2379 6201 35946 43122 43122 1 GGTYDTYVGSGWLIK Unmodified 1615.7882 0.7882229 2413 Q96AY3 FKBP10 Peptidyl-prolyl cis-trans isomerase FKBP10 yes yes 0 0 0 0 By MS/MS 8 0 1 1 72.538 72.584 3 5.2139E-07 23391 20211116_3436_TMUAki_TMT10x_P_F8 115.06 93.507 3408600 5338000 15508 5161600 3560600 5968900 4477800 3336400 3689000 3610500 4064300 3173900 4980200 299180 5290300 3438100 5971800 4469700 3533300 3800800 3514900 3909100 1 1 1 1 1 1 1 1 1 1 1 3408600 5338000 15508 5161600 3560600 5968900 4477800 3336400 3689000 3610500 4064300 3173900 4980200 299180 5290300 3438100 5971800 4469700 3533300 3800800 3514900 3909100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 470550000 470550000 0 6661 2413 6202 35947 43123 43123 1 GGVADALLYR Unmodified 1033.5556 0.55564418 668 P14406 COX7A2 Cytochrome c oxidase subunit 7A2, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 52.118 52.275 2 5.3745E-10 14731 20211116_3445_TMUAki_TMT10x_S_F6 172.21 122.85 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6662 668 6203 35948;35949;35950;35951;35952 43124;43125;43126;43127;43128 43128 5 GGVDHAAAFGR Unmodified 1056.5101 0.51009098 2862 Q9HC38-2;Q9HC38 GLOD4 Glyoxalase domain-containing protein 4 yes no 0 0 0 0 By MS/MS By MS/MS 3.83 1.07 1 1 2 2 5 1 29.449 29.351 2;3 1.1674E-11 6099 20211116_3431_TMUAki_TMT10x_P_F4 177.3 160.75 1708200 2784900 0 2529200 2565200 2958000 1944000 1369700 1609300 1532500 2072300 1590200 2597700 121430 2604700 2441900 2951300 1994000 1477700 1668200 1490000 1984700 5 5 0 5 5 5 5 5 5 5 5 1571500 2525800 0 2296000 2416600 2813000 1755100 1225000 1468400 1394500 1877300 1463000 2356000 112600 2366200 2298600 2798100 1806000 1330700 1520900 1354900 1798300 4 4 0 4 4 4 4 4 4 4 4 136630 259090 0 233230 148540 145020 188900 144720 140860 138010 194970 127190 241670 8829.4 238440 143270 153170 188010 146950 147330 135060 186410 1 1 0 1 1 1 1 1 1 1 1 167250000 159260000 7993000 6663 2862 6204 35953;35954;35955;35956;35957;35958 43129;43130;43131;43132;43133;43134 43131 6 GGVPLVK Unmodified 668.42211 0.42211082 2588 Q99613;Q99613-2;B5ME19 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 0 0 0 0 By MS/MS 7 0.816 1 1 1 3 40.042 40.675 2 0.0095152 9929 20211116_3447_TMUAki_TMT10x_S_F8 99.511 44.116 405090 655690 0 650040 411180 316680 419900 365270 378420 374270 499570 377170 611810 32650 658560 394420 344270 424180 369200 391090 365160 478170 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 405090 655690 0 650040 411180 316680 419900 365270 378420 374270 499570 377170 611810 32650 658560 394420 344270 424180 369200 391090 365160 478170 1 1 0 1 1 1 1 1 1 1 1 76198000 0 76198000 6664 2588 6205 35959;35960;35961 43135;43136;43137 43137 3 GGVSAVAGGVTAVGSAVVNKVPLTGK Unmodified 2294.2958 0.29579468 2299 Q8WUH6 TMEM263 Transmembrane protein 263 yes yes 0 0 0 1 By MS/MS 5 0 1 1 73.373 73.417 3 6.9152E-39 24234 20211116_3433_TMUAki_TMT10x_P_F5 186.82 172.8 2137500 3645300 0 3223400 1786900 3460200 2321100 1812300 1716100 1986500 2509800 1990100 3399900 155330 3321700 1725700 3473300 2307700 1931000 1800500 1932900 2396500 1 1 0 1 1 1 1 1 1 1 1 2137500 3645300 0 3223400 1786900 3460200 2321100 1812300 1716100 1986500 2509800 1990100 3399900 155330 3321700 1725700 3473300 2307700 1931000 1800500 1932900 2396500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 508230000 508230000 0 6665 2299 6206 35962 43138 43138 1 GGVVGIK Unmodified 628.39081 0.39081069 482 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 By MS/MS By MS/MS 7 0.894 2 1 2 3 2 36.705 36.984 2 0.0026578 8272 20211116_3445_TMUAki_TMT10x_S_F6 123.34 67.942 6517800 10069000 9965 11195000 10150000 9684700 5341200 6080500 7220300 5787900 8095600 6067900 9399400 492180 11319000 9605000 9878300 5727400 6355300 7294200 5664800 7782400 9 9 2 9 9 9 9 9 9 9 9 4039200 6166100 9098.8 6786600 8082800 7977400 2905900 3580800 4435200 3498200 4905300 3760500 5755900 343470 6897400 7616900 7954600 3265600 3860200 4461800 3419900 4717400 4 4 1 4 4 4 4 4 4 4 4 2478600 3902600 866.2 4408600 2067200 1707200 2435300 2499600 2785100 2289700 3190300 2307400 3643500 148710 4421300 1988100 1923600 2461800 2495200 2832400 2244900 3065000 5 5 1 5 5 5 5 5 5 5 5 366340000 306120000 60227000 6666 482 6207 35963;35964;35965;35966;35967 43139;43140;43141;43142;43143;43144;43145;43146;43147 43144 9 GGVVGIKVDK Unmodified 970.58113 0.58113065 482 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 1 By MS/MS By MS/MS 6.17 2.41 1 1 2 2 3 3 38.109 38.26 3 2.1942E-05 11785 20211116_3435_TMUAki_TMT10x_P_F7 101.93 69.994 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6667 482 6208 35968;35969;35970;35971;35972;35973 43148;43149;43150;43151;43152;43153 43149 6 GGVVLKEDALPGQK Unmodified 1409.7878 0.78782897 939 P35613;P35613-2 BSG Basigin yes no 0 0 0 1 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 46.701 46.972 3 4.2857E-09 12590 20211116_3445_TMUAki_TMT10x_S_F6 123.38 108.12 9776600 16196000 23750 16315000 15123000 16079000 11784000 10898000 10475000 9277800 13278000 9103000 15113000 882040 16632000 14416000 16279000 12087000 11294000 10813000 9127900 12722000 3 3 2 3 3 3 3 3 3 3 3 5301100 9014900 11374 9300000 10626000 11953000 6880700 6231900 6200900 5150000 7763800 4935700 8412900 499150 9507000 10093000 11884000 7154200 6592500 6393600 5074300 7441000 2 2 1 2 2 2 2 2 2 2 2 4475600 7180700 12375 7014600 4497200 4126500 4903100 4666500 4273900 4127800 5514000 4167300 6699800 382890 7124600 4323000 4394100 4932700 4701200 4419500 4053600 5280800 1 1 1 1 1 1 1 1 1 1 1 1141900000 731940000 409960000 6668 939 6209 35974;35975;35976 43154;43155;43156 43156 3 GGVVTSNPLGF Unmodified 1046.5397 0.53965977 1115 P49748;P49748-2;P49748-3 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS 6 0 1 1 71.639 71.583 2 0.0034299 22316 20211116_3434_TMUAki_TMT10x_P_F6 75.38 52.55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6669 1115 6210 35977 43157 43157 1 GGYDGYRPSFSNTPNSGYTQSQFSAPR Unmodified 2940.3063 0.30631237 1709 Q14444;Q14444-2 CAPRIN1 Caprin-1 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 4 4 4 4 49.472 49.405 3;4 8.8499E-156 13368 20211116_3447_TMUAki_TMT10x_S_F8 360.57 346.41 12096000 21418000 133370 22879000 11721000 12311000 9038700 6352500 6407100 5750000 11715000 11263000 19991000 984540 23080000 11176000 13060000 9227200 6741500 6821600 5640600 11137000 9 9 4 9 9 9 9 9 9 9 9 4655700 8143600 80187 8300900 5309100 6826500 4153600 3523100 3489200 2866800 4677700 4335100 7599400 346710 8435100 5063800 6971100 4253000 3729200 3620900 2826900 4475600 4 4 1 4 4 4 4 4 4 4 4 7440700 13274000 53181 14579000 6412200 5484700 4885100 2829300 2917900 2883200 7037300 6928300 12391000 637830 14644000 6112300 6088700 4974100 3012300 3200700 2813700 6661100 5 5 3 5 5 5 5 5 5 5 5 2249200000 1412500000 836660000 6670 1709 6211 35978;35979;35980;35981;35982;35983;35984;35985 43158;43159;43160;43161;43162;43163;43164;43165;43166 43165 9 GGYIGSTYFER Unmodified 1248.5775 0.57750184 1292 P61081 UBE2M NEDD8-conjugating enzyme Ubc12 yes yes 0 0 0 0 By MS/MS By MS/MS 4.86 0.833 3 2 2 3 4 49.209 49.362 2 9.2673E-16 13272 20211116_3444_TMUAki_TMT10x_S_F5 205.83 175.14 28846000 46799000 67724 56309000 50454000 57062000 39333000 37557000 37341000 35053000 40491000 26858000 43704000 2533300 56784000 48087000 57646000 40417000 39094000 38187000 34337000 38963000 6 6 2 6 6 6 6 6 6 6 6 20074000 32172000 103.9 38184000 42493000 50483000 32737000 26085000 26352000 24514000 27782000 18689000 30043000 1766400 38713000 40485000 50122000 33519000 27706000 27138000 24007000 26756000 4 4 1 4 4 4 4 4 4 4 4 8772600 14626000 67620 18125000 7960400 6578900 6596600 11472000 10990000 10538000 12709000 8168600 13661000 766940 18071000 7601800 7524300 6898500 11389000 11049000 10331000 12207000 2 2 1 2 2 2 2 2 2 2 2 3320500000 1873800000 1446700000 6671 1292 6212 35986;35987;35988;35989;35990;35991;35992 43167;43168;43169;43170;43171;43172;43173;43174 43173 8 GGYVLHIGTIYGDLK Unmodified 1604.8562 0.85624288 1104 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.2 2 1 1 2 3 3 64.784 64.894 3 3.2999E-14 20126 20211116_3428_TMUAki_TMT10x_P_F1 142.38 111.56 62258000 110110000 412640 96692000 93153000 134070000 93131000 102890000 92118000 102330000 88821000 57968000 102690000 5516600 100150000 89314000 133580000 94437000 106170000 93642000 99963000 85785000 10 10 6 10 10 10 10 10 10 10 10 35223000 60248000 280310 52281000 53421000 99256000 56805000 53283000 47772000 52707000 47127000 32797000 56188000 3279500 54601000 51314000 97185000 57163000 56477000 48972000 51500000 45481000 5 5 3 5 5 5 5 5 5 5 5 27036000 49861000 132340 44411000 39732000 34816000 36326000 49607000 44346000 49622000 41695000 25171000 46505000 2237100 45548000 38000000 36393000 37273000 49691000 44670000 48463000 40304000 5 5 3 5 5 5 5 5 5 5 5 9120700000 5432600000 3688000000 6672 1104 6213 35993;35994;35995;35996;35997;35998 43175;43176;43177;43178;43179;43180;43181;43182;43183;43184;43185 43175 11 GHAAFTSDPKPTIEVSGK Unmodified 1840.9319 0.93192702 466 P00390;P00390-2;P00390-3;P00390-5;P00390-4 GSR Glutathione reductase, mitochondrial yes no 0 0 0 1 By MS/MS 7 0 1 1 40.336 40.777 4 4.2435E-12 11637 20211116_3435_TMUAki_TMT10x_P_F7 133.16 117.03 2615000 4114200 110150 4561800 5953300 5726700 3065200 3086600 2817800 2666200 3294200 2435700 3840700 366210 4639600 5642300 5702800 3252500 3258900 2894300 2621200 3163100 2 2 2 2 2 2 2 2 2 2 2 2615000 4114200 110150 4561800 5953300 5726700 3065200 3086600 2817800 2666200 3294200 2435700 3840700 366210 4639600 5642300 5702800 3252500 3258900 2894300 2621200 3163100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 312720000 312720000 0 6673 466 6214 35999 43186;43187 43186 2 GHALLILRPEELGFLR Unmodified 1833.0625 0.062487683 2976 Q9NVP1 DDX18 ATP-dependent RNA helicase DDX18 yes yes 0 0 0 1 By MS/MS By MS/MS 2.4 0.49 3 2 2 3 66.815 66.514 3;4 3.029E-29 23891 20211116_3441_TMUAki_TMT10x_S_F3 193.97 170.57 9678300 16652000 67823 14857000 12983000 12916000 11640000 12392000 10971000 12190000 13073000 9011800 15531000 888980 15254000 12418000 13266000 11857000 12620000 11265000 11914000 12546000 9 9 5 9 9 9 9 9 9 9 9 2395700 3696800 21273 3584700 2438700 4424800 2979200 2490300 2218900 2428400 2664400 2230700 3449100 215380 3677400 2353000 4412400 2970100 2627700 2306400 2374200 2556400 3 3 2 3 3 3 3 3 3 3 3 7282700 12955000 46550 11272000 10544000 8491100 8661200 9902000 8751700 9761700 10409000 6781100 12082000 673600 11577000 10065000 8853400 8886700 9992300 8958200 9539600 9989900 6 6 3 6 6 6 6 6 6 6 6 3760900000 1710000000 2050900000 6674 2976 6215 36000;36001;36002;36003;36004 43188;43189;43190;43191;43192;43193;43194;43195;43196 43194 9 GHAVGDIPGVR Unmodified 1076.5727 0.57269123 1344 P62266 RPS23 40S ribosomal protein S23 yes yes 0 0 0 0 By MS/MS By MS/MS 4.25 0.829 1 1 2 3 1 32.057 31.965 2;3 2.448E-08 7174 20211116_3431_TMUAki_TMT10x_P_F4 142.83 132.82 6154000 9385800 567.84 8511000 7000600 6635800 5535500 2955500 3381800 3538400 5928300 5728700 8754700 364080 8716400 6665400 6793100 5624800 3208200 3625000 3431700 5639900 5 5 1 5 5 5 5 5 5 5 5 5448700 8244900 0 7462100 6260200 6052600 4730900 2436400 2798000 3019500 5125600 5072000 7690500 308750 7646800 5954100 6171600 4818900 2677100 3013700 2925000 4872500 3 3 0 3 3 3 3 3 3 3 3 705340 1140800 567.84 1048900 740440 583270 804600 519160 583760 518820 802610 656710 1064200 55331 1069600 711340 621480 805950 531070 611310 506720 767480 2 2 1 2 2 2 2 2 2 2 2 509500000 479360000 30141000 6675 1344 6216 36005;36006;36007;36008 43197;43198;43199;43200;43201;43202 43198 6 GHAVNLLDVPVPVAR Unmodified 1555.8835 0.88346068 87 O00429;O00429-2;O00429-4;O00429-3;O00429-5;O00429-9;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 54.978 55.308 3 2.7473E-14 15718 20211116_3447_TMUAki_TMT10x_S_F8 145.41 124.71 13348000 20703000 301210 23011000 16647000 19111000 14015000 17211000 16374000 15971000 18409000 12431000 19327000 1426900 23254000 15914000 19667000 14426000 17557000 16626000 15649000 17696000 6 6 5 6 6 6 6 6 6 6 6 5924600 8714400 88714 9154300 8989600 12264000 7353700 7406000 6519000 6588400 7628200 5517000 8133100 616790 9354300 8583900 12193000 7518900 7750600 6707800 6468200 7324300 3 3 3 3 3 3 3 3 3 3 3 7423500 11989000 212490 13857000 7657800 6847600 6661100 9804700 9854500 9382200 10781000 6913600 11194000 810130 13899000 7330000 7474700 6907600 9806900 9918400 9180600 10371000 3 3 2 3 3 3 3 3 3 3 3 6838800000 3585100000 3253600000 6676 87 6217 36009;36010;36011;36012 43203;43204;43205;43206;43207;43208 43208 6 GHDASQITLALGTAASYPR Unmodified 1927.9752 0.97518882 2155 Q8IXH7;Q8IXH7-4 NELFCD Negative elongation factor C/D yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 53.837 54.157 3 3.6873E-16 15287 20211116_3447_TMUAki_TMT10x_S_F8 141.6 128.4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6677 2155 6218 36013;36014 43209;43210 43210 2 GHDEREHPFLVK Unmodified 1462.7317 0.73171107 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 1 By MS/MS 5 0 2 2 32.168 32.108 4;5 0.00053209 7487 20211116_3433_TMUAki_TMT10x_P_F5 81.92 66.654 949130 1446400 7691.4 1571100 2741500 1986000 1188100 1162700 1287700 1052700 1404900 883790 1350100 110800 1600200 2590100 1979100 1289400 1220400 1309800 1032700 1351600 2 2 1 2 2 2 2 2 2 2 2 949130 1446400 7691.4 1571100 2741500 1986000 1188100 1162700 1287700 1052700 1404900 883790 1350100 110800 1600200 2590100 1979100 1289400 1220400 1309800 1032700 1351600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 143490000 143490000 0 6678 1433 6219 36015;36016 43211;43212 43211 2 GHDLEFCLYGR Unmodified 1365.6136 0.61356977 2579 Q99523;Q99523-2 SORT1 Sortilin yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 47.367 47.523 3 1.1068E-05 13784 20211116_3442_TMUAki_TMT10x_S_F4 104.82 88.192 5062400 8383300 27917 8331900 8998900 11166000 6185400 6336200 6784500 6107800 7200300 4713600 7822300 468750 8545900 8557400 11092000 6439800 6679100 6890600 5974600 6933000 3 3 1 3 3 3 3 3 3 3 3 4231000 6916200 27917 6820400 8154700 10314000 5379100 5151100 5415800 5099900 5998600 3939500 6453100 411140 7017000 7749700 10176000 5602500 5496300 5528700 4983000 5768600 2 2 1 2 2 2 2 2 2 2 2 831480 1467100 0 1511500 844140 852030 806350 1185100 1368700 1007900 1201700 774100 1369100 57613 1529000 807700 916150 837300 1182800 1361800 991670 1164400 1 1 0 1 1 1 1 1 1 1 1 402250000 269400000 132850000 6679 2579 6220 36017;36018;36019 43213;43214;43215;43216 43215 4 GHDLNEDGLVSWEEYK Unmodified 1889.8432 0.84317159 252 O43852;O43852-3;O43852-10;O43852-6;O43852-5;O43852-13;O43852-14;O43852-11 CALU Calumenin yes no 0 0 0 0 By MS/MS By MS/MS 2.12 0.927 2 4 1 1 5 3 60.219 59.992 3 1.4383E-22 19565 20211116_3429_TMUAki_TMT10x_P_F2 161.84 144.21 6339200 9325500 0 12120000 6790100 6752700 6461100 3947500 4094200 4319700 6563800 5902200 8712200 499850 12086000 6500400 7147300 6497700 4166300 4356400 4203600 6255400 2 2 0 2 2 2 2 2 2 2 2 3543600 4979100 0 6415000 4316000 4992700 4091800 2332700 2396200 2474900 3661800 3299200 4651400 280690 6421700 4131200 5114200 4109700 2510200 2556800 2411200 3493200 1 1 0 1 1 1 1 1 1 1 1 2795600 4346500 0 5704700 2474200 1760000 2369400 1614800 1698000 1844900 2902100 2602900 4060800 219160 5664800 2369200 2033000 2388000 1656100 1799500 1792300 2762300 1 1 0 1 1 1 1 1 1 1 1 1959300000 1379600000 579710000 6680 252 6221 36020;36021;36022;36023;36024;36025;36026;36027 43217;43218;43219;43220;43221;43222;43223 43219 7 GHELVLANIAESDAGVYTCHAANLAGQR Unmodified 2936.4199 0.41990234 1617 Q13308;Q13308-5;Q13308-3;Q13308-4;Q13308-2;Q13308-6 PTK7 Inactive tyrosine-protein kinase 7 yes no 0 0 0 0 By MS/MS 7 0 1 1 58.758 59.49 4 0.055129 19144 20211116_3435_TMUAki_TMT10x_P_F7 35.198 24.868 9957700 17442000 479770 15917000 12147000 24428000 13973000 14672000 13082000 14094000 12055000 9275200 16270000 1303400 16473000 11723000 24141000 14050000 15393000 13311000 13788000 11660000 1 1 1 1 1 1 1 1 1 1 1 9957700 17442000 479770 15917000 12147000 24428000 13973000 14672000 13082000 14094000 12055000 9275200 16270000 1303400 16473000 11723000 24141000 14050000 15393000 13311000 13788000 11660000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 830610000 830610000 0 6681 1617 6222 36028 43224 43224 1 GHFEAFGTLTDCVVVVNPQTK Unmodified 2318.1365 0.13651684 1601 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 0 0 0 0 By MS/MS By MS/MS 7.19 0.726 3 7 6 8 8 65.803 66.067 2;3;4 1.0401E-88 20120 20211116_3447_TMUAki_TMT10x_S_F8 262.07 245.14 102010000 167140000 1964500 147820000 109990000 140900000 115110000 93576000 80381000 95137000 131250000 94990000 155890000 9824300 152060000 105700000 142900000 115410000 97576000 85099000 92852000 125040000 32 32 21 32 32 32 32 32 32 32 32 51178000 76773000 1100400 67916000 47391000 89315000 57773000 45568000 38903000 45547000 67950000 47659000 71604000 5087700 70231000 45760000 88685000 57475000 48538000 41434000 44485000 64649000 16 16 11 16 16 16 16 16 16 16 16 50827000 90367000 864060 79903000 62599000 51583000 57332000 48007000 41478000 49590000 63303000 47330000 84283000 4736600 81830000 59937000 54216000 57939000 49038000 43665000 48367000 60391000 16 16 10 16 16 16 16 16 16 16 16 25539000000 14581000000 10958000000 6682 1601 6223 36029;36030;36031;36032;36033;36034;36035;36036;36037;36038;36039;36040;36041;36042;36043;36044 43225;43226;43227;43228;43229;43230;43231;43232;43233;43234;43235;43236;43237;43238;43239;43240;43241;43242;43243;43244;43245;43246;43247;43248;43249;43250;43251;43252;43253;43254;43255;43256;43257;43258;43259;43260 43260 36 GHFEAFGTLTDCVVVVNPQTKR Unmodified 2474.2376 0.23762787 1601 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 0 0 0 1 By MS/MS By MS/MS 5.71 3.01 2 2 3 4 3 58.219 58.402 3;4 4.9864E-45 17536 20211116_3436_TMUAki_TMT10x_P_F8 214.26 205.78 36689000 60733000 552880 53383000 43212000 71123000 43508000 57708000 52284000 53409000 54227000 34163000 56643000 3406500 55244000 41459000 71060000 44388000 59222000 52875000 52339000 52251000 10 10 7 10 10 10 10 10 10 10 10 22400000 36627000 467650 32093000 22738000 52680000 27533000 34413000 31313000 31518000 31942000 20859000 34160000 2223500 33368000 21946000 51986000 27794000 35824000 31712000 30902000 30794000 6 6 5 6 6 6 6 6 6 6 6 14290000 24107000 85229 21290000 20474000 18444000 15974000 23295000 20972000 21890000 22285000 13304000 22484000 1183000 21876000 19513000 19074000 16593000 23398000 21163000 21437000 21457000 4 4 2 4 4 4 4 4 4 4 4 8490700000 4958400000 3532300000 6683 1601 6224 36045;36046;36047;36048;36049;36050;36051 43261;43262;43263;43264;43265;43266;43267;43268;43269;43270 43266 10 GHFECPPYNSSTIR Unmodified 1663.7413 0.74128948 3150 Q9UK59 DBR1 Lariat debranching enzyme yes yes 0 0 0 0 By MS/MS By matching 5 0 2 1 1 34.732 34.797 3 3.0716E-06 8708 20211116_3433_TMUAki_TMT10x_P_F5 103.13 95.904 408290 740530 0 954930 1448300 1174900 701330 717070 725100 587900 759410 380110 691800 43226 962330 1369500 1173000 751180 748300 737840 579500 731510 1 1 0 1 1 1 1 1 1 1 1 408290 740530 0 954930 1448300 1174900 701330 717070 725100 587900 759410 380110 691800 43226 962330 1369500 1173000 751180 748300 737840 579500 731510 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78911000 58604000 20307000 6684 3150 6225 36052;36053 43271 43271 1 GHFGPIHCVR Unmodified 1178.5767 0.57673075 3284 Q9Y3F4;Q9Y3F4-2 STRAP Serine-threonine kinase receptor-associated protein yes no 0 0 0 0 By MS/MS By MS/MS 1 0 6 2 4 30.18 30.216 3;4 1.4169E-06 7883 20211116_3439_TMUAki_TMT10x_S_F1 145.16 127.12 833440 1316400 23391 1344500 1068200 1042700 926440 683850 699540 779800 974670 776160 1228400 90576 1365100 1021900 1072700 940120 716270 731350 757640 931710 7 7 5 7 7 7 7 7 7 7 7 353900 522320 8732.3 504160 511130 553570 320920 268850 293520 287820 361270 329560 487310 37199 516350 485680 554500 334620 288290 302210 280320 346400 3 3 2 3 3 3 3 3 3 3 3 479540 794030 14659 840330 557100 489080 605530 414990 406020 491980 613410 446600 741090 53377 848750 536200 518240 605500 427980 429150 477320 585310 4 4 3 4 4 4 4 4 4 4 4 238360000 85672000 152690000 6685 3284 6226 36054;36055;36056;36057;36058;36059 43272;43273;43274;43275;43276;43277;43278;43279 43277 8 GHFGPINSVAFHPDGK Unmodified 1678.8216 0.82158871 1623 Q13347 EIF3I Eukaryotic translation initiation factor 3 subunit I yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 44.226 44.461 4 6.3592E-29 13100 20211116_3435_TMUAki_TMT10x_P_F7 184 174.2 31491000 57850000 1688700 66735000 70697000 74277000 43060000 35394000 34988000 37813000 39016000 29334000 54014000 4719900 67566000 67194000 74330000 44873000 38021000 36090000 36830000 37513000 9 9 8 9 9 9 9 9 9 9 9 24947000 47091000 1376000 53227000 66125000 68847000 37507000 28459000 28083000 31007000 30689000 23238000 43964000 3927400 54101000 62768000 68266000 39249000 31050000 29074000 30178000 29524000 6 6 6 6 6 6 6 6 6 6 6 6544100 10759000 312750 13508000 4571400 5430100 5552900 6934800 6905400 6806100 8326800 6095400 10050000 792510 13466000 4426000 6064000 5623100 6971000 7016300 6652500 7988600 3 3 2 3 3 3 3 3 3 3 3 4402900000 2536600000 1866300000 6686 1623 6227 36060;36061;36062;36063;36064;36065 43280;43281;43282;43283;43284;43285;43286;43287;43288 43283 9 GHGECPTTENTETFIR Unmodified 1847.8108 0.81082561 303 O60942;O60942-3;O60942-4;O60942-2 RNGTT mRNA-capping enzyme;Polynucleotide 5'-triphosphatase;mRNA guanylyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 33.539 33.385 3 4.6578E-15 10373 20211116_3441_TMUAki_TMT10x_S_F3 143.46 136.57 361670 563750 755.25 709790 793270 668510 472140 444980 490570 386220 560460 336730 526580 32973 713170 752350 678560 496270 461950 500750 379630 538500 2 2 1 2 2 2 2 2 2 2 2 252030 358650 0 469030 705680 582800 364030 290420 321300 252370 378830 234630 335070 23487 472390 667800 580130 385790 308900 330780 248050 363660 1 1 0 1 1 1 1 1 1 1 1 109650 205100 755.25 240760 87588 85707 108110 154560 169270 133850 181640 102100 191510 9485.3 240780 84545 98424 110480 153050 169970 131580 174830 1 1 1 1 1 1 1 1 1 1 1 95165000 64560000 30605000 6687 303 6228 36066;36067;36068 43289;43290 43290 2 GHGRPAAAVAQPLEPGPGPPER Unmodified 2160.1188 0.11883336 1722 Q14681 KCTD2 BTB/POZ domain-containing protein KCTD2 yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 31.489 31.472 4 2.7887E-19 7274 20211116_3433_TMUAki_TMT10x_P_F5 142.97 128.36 129620 205830 0 227900 365490 281850 157210 123810 156680 127310 208000 120680 192150 13493 231740 345180 280250 170340 133970 161230 124190 199060 1 1 0 1 1 1 1 1 1 1 1 129620 205830 0 227900 365490 281850 157210 123810 156680 127310 208000 120680 192150 13493 231740 345180 280250 170340 133970 161230 124190 199060 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 45199000 45199000 0 6688 1722 6229 36069;36070 43291 43291 1 GHIAVSAAVFPTGTK Unmodified 1454.7882 0.78816332 2912 Q9NQW7;Q9NQW7-3;Q9NQW7-2;Q9NQW7-4 XPNPEP1 Xaa-Pro aminopeptidase 1 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 47.58 47.293 3 9.2385E-07 13157 20211116_3440_TMUAki_TMT10x_S_F2 98.943 62.418 1995100 3351100 15510 4045000 4118300 5301900 2790500 2871700 2339200 2578800 2861800 1857800 3129500 209600 4096300 3916300 5269100 2886000 3033600 2418100 2530600 2744500 1 1 1 1 1 1 1 1 1 1 1 1995100 3351100 15510 4045000 4118300 5301900 2790500 2871700 2339200 2578800 2861800 1857800 3129500 209600 4096300 3916300 5269100 2886000 3033600 2418100 2530600 2744500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 274760000 274760000 0 6689 2912 6230 36071;36072 43292;43293 43293 2 GHKVPCVGLSIGVER Unmodified 1606.8613 0.86134503 1106 P49590;P49590-2 HARS2 Probable histidine--tRNA ligase, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 40.575 40.485 4 0.0014487 10153 20211116_3428_TMUAki_TMT10x_P_F1 67.685 52.419 4669600 7414100 29877 8056300 6318100 5831100 5479800 4375000 4092600 4272800 6132000 4348000 6920500 434410 8140200 6038600 6044900 5559300 4518600 4296600 4177200 5852200 4 4 2 4 4 4 4 4 4 4 4 2455300 3704500 0 4041000 4191800 4143000 3376600 2337400 2090700 2228500 3280100 2286100 3458000 224210 4100300 3998600 4173700 3427800 2464400 2225400 2180900 3127300 2 2 0 2 2 2 2 2 2 2 2 2214300 3709600 29877 4015300 2126200 1688100 2103200 2037500 2001800 2044300 2852000 2062000 3462600 210190 4039900 2040000 1871200 2131400 2054200 2071100 1996300 2724900 2 2 2 2 2 2 2 2 2 2 2 348960000 232680000 116290000 6690 1106 6231 36073;36074;36075;36076 43294;43295;43296;43297 43294 4 GHLDAELDAYMAQTDPETND Oxidation (M) 2220.9117 0.91172144 3289 Q9Y3Y2;Q9Y3Y2-4;Q9Y3Y2-3 CHTOP Chromatin target of PRMT1 protein yes no 0 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 54.65 54.502 3 3.1356E-09 15878 20211116_3428_TMUAki_TMT10x_P_F1 112.34 108.73 4248200 7143000 22821 7616300 5409800 7265700 4648300 5838500 5844000 5124200 5878400 3955300 6667000 348070 7731200 5166700 7391400 4791800 5986800 5894100 5034000 5669600 4 4 1 4 4 4 4 4 4 4 4 2380500 3863500 0 4120300 3529700 5821100 3133600 3441200 3169600 2864100 3107700 2216300 3606000 183360 4210600 3372600 5771800 3200400 3601600 3220700 2821000 2999800 2 2 0 2 2 2 2 2 2 2 2 1867700 3279500 22821 3496000 1880000 1444600 1514600 2397300 2674400 2260100 2770800 1739100 3060900 164710 3520600 1794100 1619600 1591400 2385200 2673400 2213000 2669900 2 2 1 2 2 2 2 2 2 2 2 1125500000 637450000 488030000 6691 3289 6232 36077;36078 43298;43299;43300;43301 43298 3259 4 GHLENNPALEK Unmodified 1220.6149 0.61494998 508 P05388;P05388-2;Q8NHW5 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 33.195 33.106 3 8.0679E-09 7630 20211116_3431_TMUAki_TMT10x_P_F4 154.66 130.37 3569900 5919500 79007 5572500 6499900 8084400 4702300 5586100 5687400 4459700 4936400 3324500 5522200 409450 5747000 6191900 8024800 4894300 5772000 5716200 4402000 4785200 3 3 2 3 3 3 3 3 3 3 3 2938500 4823700 79007 4541200 5901000 7499800 3921000 5106600 5065500 3925100 4137700 2736700 4500000 358750 4696900 5613100 7404000 4116200 5277500 5070200 3882100 4020200 2 2 2 2 2 2 2 2 2 2 2 631380 1095700 0 1031400 598900 584690 781330 479530 621900 534600 798710 587870 1022200 50700 1050000 578760 620830 778070 494510 645930 519850 765010 1 1 0 1 1 1 1 1 1 1 1 627470000 544600000 82874000 6692 508 6233 36079;36080;36081 43302;43303;43304 43302 3 GHLLDSFAR Unmodified 1014.5247 0.52467841 2912 Q9NQW7;Q9NQW7-3;Q9NQW7-2;Q9NQW7-4 XPNPEP1 Xaa-Pro aminopeptidase 1 yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 39.798 40.43 3 0.00057791 11899 20211116_3446_TMUAki_TMT10x_S_F7 96.624 64.403 152240 272030 10530 327390 180720 165750 182020 238420 221380 224260 243850 141820 254040 22834 327670 173950 180460 185780 238310 224290 219610 234540 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 152240 272030 10530 327390 180720 165750 182020 238420 221380 224260 243850 141820 254040 22834 327670 173950 180460 185780 238310 224290 219610 234540 1 1 1 1 1 1 1 1 1 1 1 30395000 0 30395000 6693 2912 6234 36082;36083 43305;43306 43306 2 GHLLYVALSPGQHR Unmodified 1546.8368 0.83684484 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 0 By matching By MS/MS 3.75 0.433 1 3 1 3 39.924 39.9 3;4 4.8996E-07 10571 20211116_3442_TMUAki_TMT10x_S_F4 101.6 85.341 1751000 2607300 0 2902700 1748800 1421200 1956100 1718200 1658600 1672200 2272300 1630300 2434000 133800 2918200 1681300 1545800 1964100 1730600 1722100 1635100 2173000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1751000 2607300 0 2902700 1748800 1421200 1956100 1718200 1658600 1672200 2272300 1630300 2434000 133800 2918200 1681300 1545800 1964100 1730600 1722100 1635100 2173000 2 2 0 2 2 2 2 2 2 2 2 296140000 184130000 112020000 6694 157 6235 36084;36085;36086;36087 43307;43308;43309 43309 3 GHLSRPEAQSLSPYTTSANR Unmodified 2171.0719 0.07194275 384 O94776;O94776-2 MTA2 Metastasis-associated protein MTA2 yes no 0 0 0 1 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 33.011 32.857 4 1.0752E-08 8665 20211116_3429_TMUAki_TMT10x_P_F2 103.1 86.985 638730 1034900 12242 1266200 1057300 836420 731260 883830 962740 724450 1038200 594700 966580 56359 1268900 1005400 879660 765960 891460 971970 714100 999190 3 3 2 3 3 3 3 3 3 3 3 209610 320440 0 436020 673690 510690 364960 309970 368340 251000 363150 195050 299440 10011 437770 637300 511140 386440 323520 374390 247570 350480 1 1 0 1 1 1 1 1 1 1 1 429120 714500 12242 830140 383600 325730 366300 573860 594410 473450 675060 399640 667140 46349 831160 368120 368520 379520 567930 597590 466540 648710 2 2 2 2 2 2 2 2 2 2 2 142250000 115690000 26561000 6695 384 6236 36088;36089;36090 43310;43311;43312 43310 3 GHLVLTPFGIGDGR Unmodified 1437.7728 0.7728476 2522 Q96MX3 ZNF48 Zinc finger protein 48 yes yes 0 0 0 0 By MS/MS 1 0 1 1 57.778 57.778 3 0.0016718 17252 20211116_3428_TMUAki_TMT10x_P_F1 63.185 25.865 2051600 3092300 0 2794600 2524900 3268400 2257000 2079600 1861000 1857600 2742500 1910100 2884300 164910 2879100 2413500 3273700 2291100 2167700 1941900 1823400 2618300 1 1 0 1 1 1 1 1 1 1 1 2051600 3092300 0 2794600 2524900 3268400 2257000 2079600 1861000 1857600 2742500 1910100 2884300 164910 2879100 2413500 3273700 2291100 2167700 1941900 1823400 2618300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 564420000 564420000 0 6696 2522 6237 36091 43313 43313 1 GHNCPKPVLNFYEANFPANVMDVIAR Oxidation (M) 2988.4375 0.43746666 710 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 yes yes 0 0 1 1 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 67.865 67.746 4 2.1263E-12 22762 20211116_3429_TMUAki_TMT10x_P_F2 115.87 112.14 55695000 93431000 453760 78834000 63844000 83098000 63533000 59466000 55220000 58406000 69785000 51860000 87126000 3640700 81518000 61227000 83861000 64204000 61622000 57058000 57086000 66868000 14 14 6 14 14 14 14 14 14 14 14 23667000 37660000 3031.3 31771000 21501000 44183000 26690000 26856000 25111000 24891000 29841000 22036000 35119000 1010700 33013000 20739000 43855000 26753000 28121000 25783000 24391000 28640000 6 6 1 6 6 6 6 6 6 6 6 32028000 55770000 450730 47063000 42343000 38915000 36843000 32610000 30109000 33515000 39943000 29824000 52007000 2630000 48505000 40487000 40005000 37451000 33501000 31274000 32695000 38228000 8 8 5 8 8 8 8 8 8 8 8 18669000000 11145000000 7523600000 6697 710 6238 36092;36093;36094;36095;36096;36097 43314;43315;43316;43317;43318;43319;43320;43321;43322;43323;43324;43325;43326;43327 43316 792 14 GHNCPKPVLNFYEANFPANVMDVIAR Unmodified 2972.4426 0.44255204 710 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 yes yes 0 0 0 1 By MS/MS By MS/MS 2.33 0.745 1 2 3 2 4 76.946 76.863 3;4 3.6532E-30 25172 20211116_3440_TMUAki_TMT10x_S_F2 164.79 146.88 54374000 86586000 513260 81715000 59064000 51517000 57285000 24039000 20553000 29882000 50087000 50628000 80775000 3718800 83255000 56593000 53728000 57063000 26003000 23565000 28943000 47403000 11 11 7 11 11 11 11 11 11 11 11 23975000 35728000 152850 34836000 20799000 27792000 22568000 9639700 8607900 11893000 20703000 22322000 33335000 1718200 35496000 19973000 28339000 22367000 10784000 9797200 11522000 19597000 4 4 2 4 4 4 4 4 4 4 4 30399000 50857000 360410 46879000 38265000 23726000 34717000 14399000 11945000 17989000 29384000 28307000 47440000 2000600 47759000 36619000 25389000 34695000 15218000 13768000 17421000 27805000 7 7 5 7 7 7 7 7 7 7 7 12543000000 5761000000 6781900000 6698 710 6238 36098;36099;36100;36101;36102;36103 43328;43329;43330;43331;43332;43333;43334;43335;43336;43337;43338 43333 11 GHNGWVTQIATTPQFPDMILSASR Oxidation (M) 2642.2911 0.29112 1405 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 1 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 69.309 69.066 3 2.2561E-05 23332 20211116_3429_TMUAki_TMT10x_P_F2 72.082 63.93 5889400 10142000 31600 9954900 6773400 7000500 6379100 4328500 3904900 4460000 6653500 5483600 9462800 494630 10125000 6484300 7253800 6414600 4539700 4178400 4350500 6333300 3 3 2 3 3 3 3 3 3 3 3 2164600 3551000 27251 3178000 2258800 3422900 2502100 1413400 1197700 1421800 2221400 2015700 3312100 206180 3272100 2173600 3426800 2484900 1538700 1311900 1388200 2111200 1 1 1 1 1 1 1 1 1 1 1 3724800 6590900 4348.4 6776900 4514600 3577600 3877000 2915100 2707200 3038200 4432100 3467900 6150700 288450 6852600 4310700 3827000 3929700 3001000 2866500 2962200 4222100 2 2 1 2 2 2 2 2 2 2 2 1873100000 1116000000 757130000 6699 1405 6239 36104;36105;36106 43339;43340;43341;43342 43340 1888 4 GHNGWVTQIATTPQFPDMILSASR Unmodified 2626.2962 0.29620538 1405 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 76.078 75.974 3 8.7415E-30 26622 20211116_3430_TMUAki_TMT10x_P_F3 175.34 167.89 8608900 14564000 121800 13829000 9545600 11952000 10575000 7826400 7309800 8177400 10251000 8016200 13587000 651020 14131000 9182400 12199000 10572000 8176000 7683800 7972000 9797900 7 7 5 7 7 7 7 7 7 7 7 5044000 7861700 46628 7568700 4611300 7951200 5698900 4491800 3993300 4445300 5679300 4696400 7334700 399880 7747800 4448100 7998800 5671000 4740200 4197000 4343400 5426400 4 4 3 4 4 4 4 4 4 4 4 3564900 6702500 75175 6259800 4934200 4000600 4875900 3334600 3316500 3732100 4571900 3319900 6252500 251140 6383500 4734300 4199900 4900600 3435900 3486800 3628600 4371500 3 3 2 3 3 3 3 3 3 3 3 3974800000 2190400000 1784400000 6700 1405 6239 36107;36108;36109;36110 43343;43344;43345;43346;43347;43348;43349 43345 7 GHNTNVGAIVFHPK Unmodified 1489.779 0.77899561 200 O43172;O43172-2 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes no 0 0 0 0 By MS/MS 1 0 1 1 36.725 36.665 4 1.7291E-06 10606 20211116_3439_TMUAki_TMT10x_S_F1 113.25 96.903 283160 427380 11486 537870 251520 242500 247940 325940 356570 305630 378460 263740 399200 33738 536500 241770 267130 255050 326570 358780 299330 364410 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 283160 427380 11486 537870 251520 242500 247940 325940 356570 305630 378460 263740 399200 33738 536500 241770 267130 255050 326570 358780 299330 364410 1 1 1 1 1 1 1 1 1 1 1 26809000 0 26809000 6701 200 6240 36111 43350 43350 1 GHPDLQGQPAEEIFESVGDR Unmodified 2180.0134 0.013424818 1090 P49257 LMAN1 Protein ERGIC-53 yes yes 0 0 0 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 58.652 58.413 3 5.7123E-11 20577 20211116_3441_TMUAki_TMT10x_S_F3 109.89 95.988 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6702 1090 6241 36112;36113;36114;36115;36116 43351;43352;43353;43354;43355 43355 5 GHPDLQGQPAEEIFESVGDRELR Unmodified 2578.2412 0.24119292 1090 P49257 LMAN1 Protein ERGIC-53 yes yes 0 0 0 1 By MS/MS By matching 1 0 2 1 1 59.115 58.965 4 3.4313E-15 17693 20211116_3428_TMUAki_TMT10x_P_F1 127.01 117.25 3291600 5459800 31023 4802600 4460600 7299200 4412100 5420200 5093900 4738300 4982800 3065100 5092100 318180 4983200 4277700 7239700 4499000 5585300 5148400 4655700 4810200 2 2 2 2 2 2 2 2 2 2 2 3291600 5459800 31023 4802600 4460600 7299200 4412100 5420200 5093900 4738300 4982800 3065100 5092100 318180 4983200 4277700 7239700 4499000 5585300 5148400 4655700 4810200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 753180000 442580000 310600000 6703 1090 6242 36117;36118 43356;43357 43356 2 GHPEFSTNR Unmodified 1043.4785 0.4784565 1036 P45974;P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 0 By MS/MS 3 0 1 1 26.441 26.148 3 0.0044819 7595 20211116_3441_TMUAki_TMT10x_S_F3 66.435 58.509 72390 120750 0 92241 94900 67065 84957 67609 58990 60907 87794 67378 112560 3289.8 95738 90548 69887 85892 68512 62171 59761 83800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72390 120750 0 92241 94900 67065 84957 67609 58990 60907 87794 67378 112560 3289.8 95738 90548 69887 85892 68512 62171 59761 83800 1 1 0 1 1 1 1 1 1 1 1 2080500 0 2080500 6704 1036 6243 36119 43358 43358 1 GHQAFDVGQPR Unmodified 1210.5843 0.58431855 630 P11717 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 29.906 29.892 3 0.037047 6336 20211116_3431_TMUAki_TMT10x_P_F4 44.564 33.734 528980 861160 1488.6 736940 663870 880460 550840 428150 445910 438040 611930 492540 803090 47133 762720 633800 877940 561410 458440 464120 427410 585170 1 1 1 1 1 1 1 1 1 1 1 528980 861160 1488.6 736940 663870 880460 550840 428150 445910 438040 611930 492540 803090 47133 762720 633800 877940 561410 458440 464120 427410 585170 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29190000 29190000 0 6705 630 6244 36120;36121 43359 43359 1 GHQFSCVCLHGDR Unmodified 1571.6722 0.67216406 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 By MS/MS By MS/MS 3.25 1.79 3 2 3 6 2 29.759 29.775 3;4 7.9904E-16 6569 20211116_3433_TMUAki_TMT10x_P_F5 178.67 165.47 1573100 2164900 11745 2406700 2940000 2876100 1636700 1340200 1454000 1237600 1852400 1464800 2020900 88609 2445100 2786400 2866500 1722700 1437000 1501300 1212900 1774600 7 7 3 7 7 7 7 7 7 7 7 1505600 2072200 9237.9 2303200 2869500 2836800 1581500 1247300 1379300 1179300 1760200 1401800 1934400 80629 2341300 2718900 2821300 1665300 1346300 1425600 1154600 1686200 6 6 2 6 6 6 6 6 6 6 6 67570 92707 2507.1 103480 70574 39319 55221 92896 74664 58256 92213 62933 86546 7980.6 103850 67436 45217 57417 90709 75729 58323 88412 1 1 1 1 1 1 1 1 1 1 1 534860000 530290000 4567300 6706 2334 6245 36122;36123;36124;36125;36126;36127;36128;36129 43360;43361;43362;43363;43364;43365;43366 43364 7 GHQLLSADVDIK Unmodified 1294.6881 0.68811492 1048 P46459;P46459-2 NSF Vesicle-fusing ATPase yes no 0 0 0 0 By MS/MS 5 0 1 1 44.99 45.117 3 2.5136E-05 12685 20211116_3433_TMUAki_TMT10x_P_F5 90.926 71.655 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6707 1048 6246 36130 43367 43367 1 GHQLSITCLVVTPDDSAIFSAAK Unmodified 2429.2261 0.22606013 248 O43818 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 0 0 0 0 By MS/MS 8 0 1 1 75.985 75.879 3 1.189E-12 24150 20211116_3447_TMUAki_TMT10x_S_F8 114.39 104.33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6708 248 6247 36131 43368 43368 1 GHQQLYWSHPR Unmodified 1407.6796 0.67961592 1346 P62273;P62273-2 RPS29 40S ribosomal protein S29 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 4 2 2 29.41 29.451 3;4 1.2038E-19 5760 20211116_3428_TMUAki_TMT10x_P_F1 234.67 214.66 1521300 2293200 2414.9 1870400 1656900 2036200 1698600 1059800 981540 1049300 1784800 1416300 2138200 111020 1940400 1588700 2042100 1698500 1126500 1058400 1025200 1696900 4 4 1 4 4 4 4 4 4 4 4 950870 1444100 0 1083200 1049800 1404700 1006300 627860 591650 664850 1145000 885250 1346200 67812 1135400 1004700 1393800 1010100 678680 639680 647810 1087400 2 2 0 2 2 2 2 2 2 2 2 570420 849050 2414.9 787130 607150 631430 692280 431900 389890 384440 639790 531080 792020 43213 805050 584000 648370 688400 447770 418740 377420 609450 2 2 1 2 2 2 2 2 2 2 2 107020000 71634000 35383000 6709 1346 6248 36132;36133;36134;36135 43369;43370;43371;43372 43370 4 GHRIEEVPELPLVVEDKVEGYK Unmodified 2534.3381 0.33805342 953 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 0 2 By MS/MS By matching 5 0 2 1 1 64.78 64.877 5 0.00087422 20666 20211116_3433_TMUAki_TMT10x_P_F5 62.064 47.451 14480000 24352000 251080 23976000 17669000 31984000 18937000 18053000 16561000 16680000 18098000 13484000 22722000 1479200 24606000 16989000 31776000 19069000 19017000 17007000 16347000 17411000 2 2 2 2 2 2 2 2 2 2 2 14480000 24352000 251080 23976000 17669000 31984000 18937000 18053000 16561000 16680000 18098000 13484000 22722000 1479200 24606000 16989000 31776000 19069000 19017000 17007000 16347000 17411000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1051200000 785500000 265690000 6710 953 6249 36136;36137 43373;43374 43374 2 GHSGAVMELHYNTDGSMLFSASTDK 2 Oxidation (M) 2686.1639 0.16393016 2436 Q96DI7;Q96DI7-2 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes no 0 0 2 0 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 46.024 46.177 4 0.0019413 12043 20211116_3444_TMUAki_TMT10x_S_F5 56.131 48.685 3094400 6217800 0 5219200 3628100 4826900 3262200 5805500 6157800 5397400 4759000 2880700 5798200 204680 5389100 3465700 4963600 3417700 5841000 6088100 5288200 4634100 3 3 0 3 3 3 3 3 3 3 3 729180 1277100 0 1335900 1300500 2147800 1123600 1122900 1184800 1021900 1101800 678750 1191900 44643 1370800 1241000 2114900 1150900 1190400 1199700 1002200 1065500 1 1 0 1 1 1 1 1 1 1 1 2365200 4940700 0 3883300 2327500 2679200 2138500 4682600 4972900 4375500 3657200 2202000 4606300 160040 4018300 2224700 2848700 2266800 4650600 4888400 4286000 3568700 2 2 0 2 2 2 2 2 2 2 2 733960000 311340000 422620000 6711 2436 6250 36138;36139;36140 43375;43376;43377 43376 2750;2751 3 GHTQDTNTFFLCR Unmodified 1595.7151 0.71507473 2250 Q8NFF5;Q8NFF5-3;Q8NFF5-2 FLAD1 FAD synthase;Molybdenum cofactor biosynthesis protein-like region;FAD synthase region yes no 0 0 0 0 By MS/MS By MS/MS 6.6 0.49 2 3 2 3 39.861 40.181 3 1.9106E-25 9579 20211116_3434_TMUAki_TMT10x_P_F6 219.74 204.71 3242900 5177800 19691 5813000 8401300 8410600 5395000 4675400 5161500 4258600 4890900 3019300 4833800 325920 5924200 7979000 8324000 5622300 4929700 5251500 4176300 4726500 4 4 2 4 4 4 4 4 4 4 4 3028500 4815000 19691 5406100 8230400 8253300 5230100 4393000 4874800 3997700 4594300 2819700 4495100 309360 5515900 7815300 8145500 5451000 4649500 4964800 3920600 4440700 3 3 2 3 3 3 3 3 3 3 3 214400 362770 0 406930 170980 157340 164880 282430 286720 260880 296600 199620 338670 16561 408290 163750 178490 171330 280200 286700 255680 285810 1 1 0 1 1 1 1 1 1 1 1 398990000 298260000 100740000 6712 2250 6251 36141;36142;36143;36144;36145 43378;43379;43380;43381;43382 43378 5 GHTVTEPIQPLEPELPGEGQPEAR Unmodified 2580.282 0.2819951 191 O15446;O15446-2 CD3EAP DNA-directed RNA polymerase I subunit RPA34 yes no 0 0 0 0 By MS/MS 2 0 1 1 51.843 51.676 3 3.8546E-10 14987 20211116_3440_TMUAki_TMT10x_S_F2 106.23 91.301 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6713 191 6252 36146 43383 43383 1 GHVDILAPTVQELAALEK Unmodified 1903.0415 0.041477469 2334 Q92499;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 By MS/MS By MS/MS 5.59 1.63 1 4 6 9 18 15 29 5 40 47 55.989 56.007 2;3;4 2.0515E-79 23858 20211116_3444_TMUAki_TMT10x_S_F5 306.54 280.03 446640000 720190000 4903600 674300000 428220000 539270000 453390000 252570000 236540000 265630000 452040000 415880000 671850000 38222000 689120000 411320000 551260000 451860000 271660000 257770000 258890000 429400000 93 93 53 93 93 93 93 93 93 93 93 247380000 390700000 3532300 364240000 192170000 336410000 230820000 143580000 131900000 148730000 247900000 230350000 364460000 20788000 373040000 185300000 340100000 229050000 155870000 142630000 145040000 235550000 48 48 27 48 48 48 48 48 48 48 48 199260000 329500000 1371300 310060000 236050000 202860000 222560000 108990000 104640000 116900000 204140000 185530000 307380000 17434000 316080000 226020000 211160000 222810000 115790000 115150000 113840000 193850000 45 45 26 45 45 45 45 45 45 45 45 194160000000 92080000000 102080000000 6714 2334 6253 36147;36148;36149;36150;36151;36152;36153;36154;36155;36156;36157;36158;36159;36160;36161;36162;36163;36164;36165;36166;36167;36168;36169;36170;36171;36172;36173;36174;36175;36176;36177;36178;36179;36180;36181;36182;36183;36184;36185;36186;36187;36188;36189;36190;36191;36192;36193;36194;36195;36196;36197;36198;36199;36200;36201;36202;36203;36204;36205;36206;36207;36208;36209;36210;36211;36212;36213;36214;36215;36216;36217;36218;36219;36220;36221;36222;36223;36224;36225;36226;36227;36228;36229;36230;36231;36232;36233 43384;43385;43386;43387;43388;43389;43390;43391;43392;43393;43394;43395;43396;43397;43398;43399;43400;43401;43402;43403;43404;43405;43406;43407;43408;43409;43410;43411;43412;43413;43414;43415;43416;43417;43418;43419;43420;43421;43422;43423;43424;43425;43426;43427;43428;43429;43430;43431;43432;43433;43434;43435;43436;43437;43438;43439;43440;43441;43442;43443;43444;43445;43446;43447;43448;43449;43450;43451;43452;43453;43454;43455;43456;43457;43458;43459;43460;43461;43462;43463;43464;43465;43466;43467;43468;43469;43470;43471;43472;43473;43474;43475;43476;43477;43478;43479;43480;43481;43482;43483;43484;43485;43486;43487;43488;43489;43490;43491;43492;43493 43457 110 GHVELSEAR Unmodified 996.49886 0.49885759 2482 Q96H79;Q96H79-2 ZC3HAV1L Zinc finger CCCH-type antiviral protein 1-like yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 27.181 26.92 3 0.00037555 7937 20211116_3441_TMUAki_TMT10x_S_F3 105.52 77.122 178030 287830 12083 269140 201610 261350 208870 204420 198560 175070 226510 165860 268510 26351 275770 194230 265450 211160 209830 203440 172190 217640 2 2 2 2 2 2 2 2 2 2 2 98786 157350 5940.1 142970 115920 180630 111270 120280 116740 96299 119180 92024 146770 13966 147430 111400 180330 113280 124620 118610 95038 114900 1 1 1 1 1 1 1 1 1 1 1 79248 130480 6143 126170 85683 80723 97599 84143 81819 78770 107330 73833 121740 12385 128340 82829 85116 97887 85217 84833 77152 102750 1 1 1 1 1 1 1 1 1 1 1 7721000 3670100 4051000 6715 2482 6254 36234;36235 43494;43495 43495 2 GHVFEESQVAGTPMFVVK Oxidation (M) 1976.9666 0.96659797 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 1 0 By MS/MS By MS/MS 6 0.816 4 4 4 6 6 54.254 54.557 3;4 2.397E-12 15371 20211116_3434_TMUAki_TMT10x_P_F6 134.14 121.78 150710000 262600000 1976400 257010000 200470000 275230000 162740000 205340000 198590000 191220000 202650000 140340000 245010000 14594000 262860000 191370000 277690000 168160000 211880000 200610000 187340000 195360000 28 28 20 28 28 28 28 28 28 28 28 91706000 154600000 1420600 153360000 141590000 219200000 114250000 123790000 117440000 114280000 120810000 85395000 144260000 9355300 157520000 135150000 217100000 117410000 130390000 119460000 112000000 116440000 17 17 13 17 17 17 17 17 17 17 17 59009000 107990000 555790 103650000 58881000 56029000 48499000 81551000 81147000 76945000 81836000 54946000 100750000 5238300 105340000 56219000 60590000 50748000 81490000 81148000 75339000 78923000 11 11 7 11 11 11 11 11 11 11 11 26284000000 13882000000 12401000000 6716 653 6255 36236;36237;36238;36239;36240;36241;36242;36243;36244;36245;36246;36247 43496;43497;43498;43499;43500;43501;43502;43503;43504;43505;43506;43507;43508;43509;43510;43511;43512;43513;43514;43515;43516;43517;43518;43519;43520;43521;43522;43523 43507 707 28 GHVFEESQVAGTPMFVVK Unmodified 1960.9717 0.97168334 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 6.3 0.9 2 4 3 1 5 5 60.601 60.797 2;3;4 2.8106E-30 20246 20211116_3446_TMUAki_TMT10x_S_F7 174.05 147.38 202190000 366840000 2429900 367180000 261030000 338390000 257760000 209040000 227430000 230940000 261230000 188270000 342300000 15484000 374130000 250290000 343600000 260690000 219720000 233900000 224650000 250960000 15 15 8 15 15 15 15 15 15 15 15 113300000 200030000 1500000 208830000 166670000 255250000 175550000 116600000 123280000 126390000 141570000 105500000 186680000 7977500 213120000 160060000 254050000 175980000 125840000 128350000 123030000 136000000 8 8 4 8 8 8 8 8 8 8 8 88891000 166810000 929910 158350000 94362000 83139000 82214000 92438000 104150000 104550000 119670000 82772000 155620000 7506100 161020000 90225000 89544000 84708000 93878000 105540000 101610000 114960000 7 7 4 7 7 7 7 7 7 7 7 17503000000 9177700000 8325200000 6717 653 6255 36248;36249;36250;36251;36252;36253;36254;36255;36256;36257 43524;43525;43526;43527;43528;43529;43530;43531;43532;43533;43534;43535;43536;43537;43538;43539 43539 16 GHVTQDAPIPGSPLYTIK Unmodified 1892.9996 0.99961265 1757 Q15029;Q15029-2;Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 52.835 53.139 3 0.0029655 16520 20211116_3435_TMUAki_TMT10x_P_F7 58.864 45.883 18589000 31028000 119970 32354000 23109000 34755000 20608000 23833000 26829000 23954000 24392000 17307000 28957000 1426700 32949000 22084000 35013000 21227000 24787000 26935000 23390000 23606000 5 5 2 5 5 5 5 5 5 5 5 11777000 18853000 105310 19365000 16405000 28194000 14727000 14590000 16666000 14340000 15103000 10965000 17594000 983780 19851000 15684000 27872000 15086000 15513000 16814000 14016000 14618000 3 3 1 3 3 3 3 3 3 3 3 6812700 12175000 14662 12989000 6704000 6561700 5880800 9243100 10163000 9613600 9289400 6342300 11364000 442890 13098000 6399500 7141400 6140800 9273500 10121000 9373900 8988200 2 2 1 2 2 2 2 2 2 2 2 3731000000 2061000000 1670100000 6718 1757 6256 36258;36259;36260;36261 43540;43541;43542;43543;43544 43541 5 GHYKGQQIGK Unmodified 1114.5883 0.5883413 1306 P61254;Q9UNX3 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 0 0 0 1 By matching By MS/MS 1 0 2 1 1 29.014 29.054 4 0.0042108 7561 20211116_3439_TMUAki_TMT10x_S_F1 73.721 53.597 131680 241360 868.48 172670 162980 164220 182180 133620 139520 147560 168650 122620 224950 12165 180880 156810 167130 182470 137820 144840 143540 161790 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 131680 241360 868.48 172670 162980 164220 182180 133620 139520 147560 168650 122620 224950 12165 180880 156810 167130 182470 137820 144840 143540 161790 1 1 1 1 1 1 1 1 1 1 1 9888400 4460700 5427700 6719 1306 6257 36262;36263 43545 43545 1 GHYNNVSCAVFHPR Unmodified 1656.7579 0.7579426 1207 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 32.009 32.024 4 1.0547E-06 8732 20211116_3439_TMUAki_TMT10x_S_F1 116.51 101.24 711790 1123600 5443.7 1089400 1137000 1273300 900660 753700 871610 789840 1002200 662730 1048300 62561 1116500 1084100 1274100 925030 793610 892620 769910 962750 3 3 1 3 3 3 3 3 3 3 3 472890 747330 5443.7 735060 888350 1007900 626300 490990 570960 511070 672910 440330 697290 47847 754830 845390 998380 647270 525890 586900 498310 645980 2 2 1 2 2 2 2 2 2 2 2 238910 376290 0 354350 248600 265340 274360 262710 300650 278760 329300 222400 351040 14714 361710 238680 275750 277760 267720 305730 271590 316780 1 1 0 1 1 1 1 1 1 1 1 45066000 27854000 17212000 6720 1207 6258 36264;36265 43546;43547;43548 43548 3 GHYTEGAELVDSVLDVVR Unmodified 1957.9745 0.97452012 1418;1668;2689;539;1640 Q13509;Q13509-2;P07437;P68371;Q13885;Q9BVA1 TUBB3;TUBB;TUBB4B;TUBB2A;TUBB2B Tubulin beta-3 chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain no no 0 0 0 0 By MS/MS By MS/MS 3.23 1.35 6 11 27 13 4 3 2 39 27 62.982 62.926 2;3 4.8171E-192 25630 20211116_3442_TMUAki_TMT10x_S_F4 441.83 398.32 138760000 243030000 1883600 207850000 165540000 246460000 179690000 146270000 134750000 164300000 172010000 129210000 226640000 12008000 215100000 159170000 246450000 180140000 154310000 140370000 159720000 164780000 73 73 43 73 73 73 73 73 73 73 73 68680000 119230000 884670 98092000 71036000 154020000 84511000 71984000 66711000 83398000 81136000 63952000 111170000 5495800 102400000 68489000 151610000 84468000 77670000 69158000 80981000 77823000 29 29 16 29 29 29 29 29 29 29 29 70085000 123810000 998900 109760000 94503000 92447000 95178000 74284000 68039000 80898000 90872000 65261000 115470000 6512500 112700000 90678000 94838000 95667000 76641000 71216000 78737000 86954000 44 44 27 44 44 44 44 44 44 44 44 98219000000 60183000000 38036000000 6721 1640;539;1418;1668;2689 6259 36266;36267;36268;36269;36270;36271;36272;36273;36274;36275;36276;36277;36278;36279;36280;36281;36282;36283;36284;36285;36286;36287;36288;36289;36290;36291;36292;36293;36294;36295;36296;36297;36298;36299;36300;36301;36302;36303;36304;36305;36306;36307;36308;36309;36310;36311;36312;36313;36314;36315;36316;36317;36318;36319;36320;36321;36322;36323;36324;36325;36326;36327;36328;36329;36330;36331 43549;43550;43551;43552;43553;43554;43555;43556;43557;43558;43559;43560;43561;43562;43563;43564;43565;43566;43567;43568;43569;43570;43571;43572;43573;43574;43575;43576;43577;43578;43579;43580;43581;43582;43583;43584;43585;43586;43587;43588;43589;43590;43591;43592;43593;43594;43595;43596;43597;43598;43599;43600;43601;43602;43603;43604;43605;43606;43607;43608;43609;43610;43611;43612;43613;43614;43615;43616;43617;43618;43619;43620;43621;43622;43623;43624;43625;43626;43627;43628;43629;43630;43631;43632;43633;43634;43635;43636;43637;43638;43639 43631 91 GHYTEGAELVDSVLDVVRK Unmodified 2086.0695 0.069483134 1418;1668;2689;539;1640 Q13509;Q13509-2;P07437;P68371;Q13885;Q9BVA1 TUBB3;TUBB;TUBB4B;TUBB2A;TUBB2B Tubulin beta-3 chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain no no 0 0 0 1 By MS/MS By MS/MS 5.89 1.82 3 5 4 8 13 15 37 14 53 46 57.223 57.236 2;3;4;5 8.5335E-289 25100 20211116_3446_TMUAki_TMT10x_S_F7 488.46 466.14 707870000 1162400000 8557100 1143800000 733290000 1089900000 747970000 580470000 586560000 671380000 764100000 659130000 1084500000 60802000 1167400000 703720000 1102200000 752930000 618620000 610090000 651960000 731610000 127 127 79 127 127 127 127 127 127 127 127 419780000 654070000 4725400 658710000 355940000 760430000 407770000 339910000 336560000 388960000 424020000 390880000 610340000 35204000 673180000 342730000 758950000 408700000 368290000 348610000 377860000 406330000 68 68 44 68 68 68 68 68 68 68 68 288090000 508290000 3831700 485140000 377350000 329450000 340200000 240560000 250000000 282420000 340090000 268250000 474200000 25598000 494230000 360990000 343230000 344230000 250330000 261470000 274100000 325280000 59 59 35 59 59 59 59 59 59 59 59 511530000000 241090000000 270440000000 6722 1640;539;1418;1668;2689 6260 36332;36333;36334;36335;36336;36337;36338;36339;36340;36341;36342;36343;36344;36345;36346;36347;36348;36349;36350;36351;36352;36353;36354;36355;36356;36357;36358;36359;36360;36361;36362;36363;36364;36365;36366;36367;36368;36369;36370;36371;36372;36373;36374;36375;36376;36377;36378;36379;36380;36381;36382;36383;36384;36385;36386;36387;36388;36389;36390;36391;36392;36393;36394;36395;36396;36397;36398;36399;36400;36401;36402;36403;36404;36405;36406;36407;36408;36409;36410;36411;36412;36413;36414;36415;36416;36417;36418;36419;36420;36421;36422;36423;36424;36425;36426;36427;36428;36429;36430 43640;43641;43642;43643;43644;43645;43646;43647;43648;43649;43650;43651;43652;43653;43654;43655;43656;43657;43658;43659;43660;43661;43662;43663;43664;43665;43666;43667;43668;43669;43670;43671;43672;43673;43674;43675;43676;43677;43678;43679;43680;43681;43682;43683;43684;43685;43686;43687;43688;43689;43690;43691;43692;43693;43694;43695;43696;43697;43698;43699;43700;43701;43702;43703;43704;43705;43706;43707;43708;43709;43710;43711;43712;43713;43714;43715;43716;43717;43718;43719;43720;43721;43722;43723;43724;43725;43726;43727;43728;43729;43730;43731;43732;43733;43734;43735;43736;43737;43738;43739;43740;43741;43742;43743;43744;43745;43746;43747;43748;43749;43750;43751;43752;43753;43754;43755;43756;43757;43758;43759;43760;43761;43762;43763;43764;43765;43766;43767;43768;43769;43770;43771;43772;43773;43774 43764 135 GIAADGANALLPANR Unmodified 1422.7579 0.75792582 2818 Q9H6T3;Q9H6T3-3;Q9H6T3-2 RPAP3 RNA polymerase II-associated protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 51.141 51.263 3 2.2666E-14 13953 20211116_3434_TMUAki_TMT10x_P_F6 127.79 88.368 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6723 2818 6261 36431;36432 43775;43776 43775 2 GIAAPHAGANVKPR Unmodified 1357.7579 0.75786624 2480 Q96GY0 ZC2HC1A Zinc finger C2HC domain-containing protein 1A yes yes 0 0 0 1 By MS/MS By MS/MS 1.8 0.748 2 2 1 3 2 30.076 29.945 3;4 1.04E-23 7507 20211116_3429_TMUAki_TMT10x_P_F2 193.22 174.59 1296700 2071700 12308 2000900 1458400 1931900 1364400 973790 1198300 1090600 1453700 1207500 1932900 121240 2045200 1396800 1950800 1383800 1041900 1235400 1060300 1394400 4 4 4 4 4 4 4 4 4 4 4 1054100 1658700 4739.3 1591900 1204000 1681000 1088700 776740 979920 871660 1176200 981530 1547500 93910 1630000 1151900 1686700 1106900 838220 1008600 847400 1128500 3 3 3 3 3 3 3 3 3 3 3 242610 413010 7569.1 409030 254380 250860 275780 197050 218390 218920 277540 225950 385370 27333 415190 244910 264110 276840 203710 226780 212910 265900 1 1 1 1 1 1 1 1 1 1 1 127640000 96029000 31608000 6724 2480 6262 36433;36434;36435;36436;36437 43777;43778;43779;43780 43778 4 GIAPGDER Unmodified 813.39808 0.39808091 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS 1 0 1 1 28.017 28.11 2 0.023071 7223 20211116_3439_TMUAki_TMT10x_S_F1 69.176 26.261 67121 123050 1406.4 97095 69888 94973 86980 56626 56363 57975 84028 62507 114720 6914.3 100850 67527 96021 86386 59549 59661 56566 80202 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 67121 123050 1406.4 97095 69888 94973 86980 56626 56363 57975 84028 62507 114720 6914.3 100850 67527 96021 86386 59549 59661 56566 80202 1 1 1 1 1 1 1 1 1 1 1 1034800 0 1034800 6725 1433 6263 36438 43781 43781 1 GIAYIEFK Unmodified 939.50657 0.50656873 729 P19338 NCL Nucleolin yes yes 0 0 0 0 By MS/MS By MS/MS 5.8 1.78 1 1 2 2 2 2 6 4 62.464 62.653 2 0.00042803 19762 20211116_3433_TMUAki_TMT10x_P_F5 146.35 94.498 159970000 251740000 1935500 270330000 200410000 247710000 177130000 175740000 164690000 172550000 199480000 148960000 234970000 15126000 274130000 191660000 252130000 180500000 182210000 169320000 168650000 191360000 14 14 11 14 14 14 14 14 14 14 14 95347000 148420000 684890 155770000 140980000 190580000 111790000 103780000 95251000 101080000 116960000 88780000 138520000 8865400 158910000 134470000 190050000 114400000 109810000 98395000 98832000 112150000 8 8 6 8 8 8 8 8 8 8 8 64622000 103320000 1250700 114560000 59429000 57127000 65343000 71958000 69439000 71465000 82523000 60177000 96451000 6260400 115220000 57195000 62073000 66098000 72399000 70927000 69816000 79202000 6 6 5 6 6 6 6 6 6 6 6 18692000000 10361000000 8330400000 6726 729 6264 36439;36440;36441;36442;36443;36444;36445;36446;36447;36448 43782;43783;43784;43785;43786;43787;43788;43789;43790;43791;43792;43793;43794;43795;43796 43785 15 GIAYIEFKTEADAEK Unmodified 1683.8356 0.83556702 729 P19338 NCL Nucleolin yes yes 0 0 0 1 By MS/MS By MS/MS 5.09 0.793 3 4 4 5 6 61.01 61.053 3;4 1.4834E-19 18834 20211116_3431_TMUAki_TMT10x_P_F4 172.24 143.22 95868000 145060000 525960 161980000 115840000 106460000 91360000 83818000 87055000 80646000 105230000 89264000 135420000 8406400 163220000 110470000 111370000 93817000 86268000 89397000 78894000 100950000 14 14 9 14 14 14 14 14 14 14 14 42586000 62447000 332460 68735000 48475000 69649000 42957000 39135000 38922000 36705000 45515000 39654000 58293000 3828200 69690000 46355000 70212000 43736000 41257000 40007000 35948000 43703000 7 7 5 7 7 7 7 7 7 7 7 53282000 82609000 193490 93244000 67364000 36815000 48403000 44683000 48133000 43941000 59718000 49611000 77122000 4578200 93529000 64113000 41162000 50081000 45011000 49390000 42946000 57250000 7 7 4 7 7 7 7 7 7 7 7 10970000000 5687400000 5283000000 6727 729 6265 36449;36450;36451;36452;36453;36454;36455;36456;36457;36458;36459 43797;43798;43799;43800;43801;43802;43803;43804;43805;43806;43807;43808;43809;43810 43797 14 GIAYIEFKTEADAEKTFEEK Unmodified 2318.1318 0.13180862 729 P19338 NCL Nucleolin yes yes 0 0 0 2 By MS/MS By MS/MS 5 0.707 1 2 1 3 1 71.004 71.025 4 4.5503E-18 22998 20211116_3431_TMUAki_TMT10x_P_F4 150.98 129.12 16707000 37049000 325160 21065000 37509000 85140000 40734000 90334000 74720000 71699000 50283000 15558000 34511000 1767800 23577000 36066000 82900000 42202000 91026000 73660000 70792000 49263000 8 8 7 8 8 8 8 8 8 8 8 13386000 29089000 229960 16747000 24371000 73196000 35058000 67936000 55780000 53895000 37790000 12465000 27097000 1266300 18800000 23651000 70967000 35643000 68918000 55202000 53215000 37011000 6 6 5 6 6 6 6 6 6 6 6 3321200 7960600 95196 4317800 13138000 11945000 5676200 22398000 18940000 17804000 12493000 3093000 7414400 501550 4776200 12415000 11933000 6558400 22108000 18459000 17578000 12251000 2 2 2 2 2 2 2 2 2 2 2 2159300000 1559000000 600350000 6728 729 6266 36460;36461;36462;36463 43811;43812;43813;43814;43815;43816;43817;43818 43812 8 GICIHTLTK Unmodified 1041.5641 0.56410038 2741 Q9BZK7 TBL1XR1 F-box-like/WD repeat-containing protein TBL1XR1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 3 1 41.39 41.309 3 0.00015414 10515 20211116_3436_TMUAki_TMT10x_P_F8 87.476 75.628 2449500 3932800 13909 4295400 3404600 3480100 2879500 2634900 2462300 2576900 2980900 2280900 3671100 229420 4344200 3252100 3576600 2935300 2719900 2541700 2519100 2859500 2 2 2 2 2 2 2 2 2 2 2 1260000 1953200 13708 2166900 2208000 2483300 1692900 1414600 1236500 1332600 1508100 1173300 1823300 130520 2200200 2105000 2486300 1730000 1489800 1287500 1304900 1446400 1 1 1 1 1 1 1 1 1 1 1 1189500 1979700 201.5 2128500 1196600 996810 1186500 1220200 1225800 1244300 1472800 1107600 1847800 98906 2144000 1147100 1090300 1205300 1230100 1254100 1214300 1413100 1 1 1 1 1 1 1 1 1 1 1 224260000 143780000 80481000 6729 2741 6267 36464;36465;36466;36467 43819;43820;43821;43822 43821 4 GIDASDYQTVQIFYPSK Unmodified 1930.9313 0.93125832 1070 P48147 PREP Prolyl endopeptidase yes yes 0 0 0 0 By MS/MS 7 0 1 1 73.675 73.847 3 7.1562E-05 25675 20211116_3446_TMUAki_TMT10x_S_F7 80.603 67.623 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6730 1070 6268 36468 43823 43823 1 GIDGVSVTSFSAR Unmodified 1294.6517 0.65172941 2760 Q9GZT8;Q9GZT8-3;Q9GZT8-2 NIF3L1 NIF3-like protein 1 yes no 0 0 0 0 By MS/MS 6 0 1 1 53.624 53.723 2 0.00030621 14967 20211116_3434_TMUAki_TMT10x_P_F6 84.687 58.085 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6731 2760 6269 36469 43824 43824 1 GIDIHGVPYVINVTLPDEK Unmodified 2078.1048 0.10480601 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 By MS/MS By MS/MS 5.98 1.68 3 3 4 6 10 18 8 29 23 65.115 65.111 2;3;4 8.5375E-58 26295 20211116_3446_TMUAki_TMT10x_S_F7 244 220.15 582050000 934250000 4113000 883510000 566860000 688050000 586140000 341710000 309360000 369720000 548770000 541900000 871560000 40353000 901990000 543670000 705210000 584970000 365750000 335330000 359930000 521970000 68 68 37 68 68 68 68 68 68 68 68 324030000 499360000 1562700 482720000 247290000 426090000 288620000 176520000 163950000 202820000 296230000 301670000 465890000 21300000 492790000 237870000 431960000 286740000 192850000 176940000 197000000 281670000 36 36 18 36 36 36 36 36 36 36 36 258020000 434890000 2550300 400790000 319570000 261960000 297520000 165200000 145410000 166890000 252540000 240230000 405670000 19053000 409200000 305790000 273260000 298230000 172890000 158390000 162930000 240300000 32 32 19 32 32 32 32 32 32 32 32 176360000000 80795000000 95562000000 6732 2334 6270 36470;36471;36472;36473;36474;36475;36476;36477;36478;36479;36480;36481;36482;36483;36484;36485;36486;36487;36488;36489;36490;36491;36492;36493;36494;36495;36496;36497;36498;36499;36500;36501;36502;36503;36504;36505;36506;36507;36508;36509;36510;36511;36512;36513;36514;36515;36516;36517;36518;36519;36520;36521 43825;43826;43827;43828;43829;43830;43831;43832;43833;43834;43835;43836;43837;43838;43839;43840;43841;43842;43843;43844;43845;43846;43847;43848;43849;43850;43851;43852;43853;43854;43855;43856;43857;43858;43859;43860;43861;43862;43863;43864;43865;43866;43867;43868;43869;43870;43871;43872;43873;43874;43875;43876;43877;43878;43879;43880;43881;43882;43883;43884;43885;43886;43887;43888;43889;43890;43891;43892;43893;43894;43895;43896;43897;43898;43899;43900;43901;43902 43898 78 GIDLLKK Unmodified 785.50109 0.50108942 1026 P43243;P43243-2 MATR3 Matrin-3 yes no 0 0 0 1 By MS/MS 8 0 1 1 48.674 48.768 3 0.02385 13623 20211116_3436_TMUAki_TMT10x_P_F8 64.265 23.996 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6733 1026 6271 36522 43903 43903 1 GIDPFSLDALSK Unmodified 1261.6554 0.65541781 982 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 0 By MS/MS By MS/MS 6.29 1.38 2 2 5 6 13 6 25 9 59.888 59.967 2;3 1.2623E-30 25910 20211116_3433_TMUAki_TMT10x_P_F5 269.33 47.051 243970000 398030000 344010 383930000 302110000 356270000 263080000 258750000 240420000 262090000 311820000 227150000 371350000 19244000 392250000 288580000 362450000 268200000 268100000 248110000 255830000 298590000 22 22 11 22 22 22 22 22 22 22 22 123480000 193770000 149750 190140000 136640000 232420000 122690000 129570000 120830000 133400000 153630000 114960000 180790000 9242700 194870000 130590000 231860000 125120000 137040000 124170000 130130000 147190000 15 15 8 15 15 15 15 15 15 15 15 120500000 204260000 194260 193790000 165470000 123840000 140390000 129180000 119590000 128690000 158190000 112190000 190560000 10001000 197390000 157990000 130600000 143070000 131060000 123940000 125700000 151400000 7 7 3 7 7 7 7 7 7 7 7 36935000000 17802000000 19134000000 6734 982 6272 36523;36524;36525;36526;36527;36528;36529;36530;36531;36532;36533;36534;36535;36536;36537;36538;36539;36540;36541;36542;36543;36544;36545;36546;36547;36548;36549;36550;36551;36552;36553;36554;36555;36556 43904;43905;43906;43907;43908;43909;43910;43911;43912;43913;43914;43915;43916;43917;43918;43919;43920;43921;43922;43923;43924;43925;43926;43927;43928;43929;43930;43931;43932;43933;43934;43935;43936;43937 43907 34 GIDQCIPLFVEAALER Unmodified 1829.9346 0.93456956 425 O95373 IPO7 Importin-7 yes yes 0 0 0 0 By MS/MS By MS/MS 3.85 1.35 3 2 4 2 2 8 5 80.524 80.512 2;3 6.2417E-22 26907 20211116_3431_TMUAki_TMT10x_P_F4 178.68 139.53 21975000 34557000 270610 34405000 23314000 33657000 25749000 19841000 17797000 21534000 26461000 20462000 32244000 1956500 35098000 22424000 34023000 25745000 20921000 18761000 20962000 25258000 13 13 8 13 13 13 13 13 13 13 13 15407000 23708000 237870 23932000 14872000 26728000 17362000 14203000 12997000 15128000 18405000 14347000 22123000 1402900 24441000 14331000 26775000 17346000 15100000 13605000 14737000 17587000 9 9 5 9 9 9 9 9 9 9 9 6567500 10849000 32736 10473000 8442500 6928600 8386900 5637800 4800300 6406000 8056400 6114800 10122000 553600 10658000 8092500 7248000 8399000 5820300 5156000 6224800 7670900 4 4 3 4 4 4 4 4 4 4 4 6896700000 4701800000 2194800000 6735 425 6273 36557;36558;36559;36560;36561;36562;36563;36564;36565;36566;36567;36568;36569 43938;43939;43940;43941;43942;43943;43944;43945;43946;43947;43948;43949;43950;43951;43952 43941 15 GIDRYNPENLATLER Unmodified 1759.8853 0.88531118 3084 Q9UBQ5;Q9UBQ5-2 EIF3K Eukaryotic translation initiation factor 3 subunit K yes no 0 0 0 1 By MS/MS By MS/MS 4.29 1.03 2 2 2 1 4 3 49.81 49.928 3 1.1949E-37 15986 20211116_3430_TMUAki_TMT10x_P_F3 241.64 209.98 25032000 42910000 305070 47313000 36665000 48419000 29351000 35785000 33918000 31316000 34343000 23308000 40056000 2418300 47973000 34984000 48974000 30295000 36887000 34321000 30769000 33116000 8 8 6 8 8 8 8 8 8 8 8 17363000 28668000 194850 31832000 27787000 41492000 23522000 24619000 23336000 21390000 22984000 16167000 26762000 1662800 32395000 26541000 41294000 24077000 25785000 23736000 21024000 22182000 6 6 4 6 6 6 6 6 6 6 6 7668900 14242000 110220 15481000 8878200 6927600 5828200 11166000 10582000 9925200 11359000 7141300 13294000 755460 15578000 8442800 7680200 6218400 11102000 10585000 9744600 10934000 2 2 2 2 2 2 2 2 2 2 2 7512800000 4008000000 3504900000 6736 3084 6274 36570;36571;36572;36573;36574;36575;36576 43953;43954;43955;43956;43957;43958;43959;43960;43961;43962 43954 10 GIDVQQVSLVINYDLPTNR Unmodified 2143.1273 0.12733236 1277;1697 P60842;Q14240;Q14240-2 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS 5.5 1.5 1 1 1 1 78.096 78.159 2;3 3.2292E-17 27510 20211116_3446_TMUAki_TMT10x_S_F7 146 114.77 1200500 1957100 0 2187100 1655200 1152700 1575600 867900 816310 839450 1555100 1117500 1827000 75483 2199500 1583100 1231700 1578900 895940 889900 821020 1477300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1200500 1957100 0 2187100 1655200 1152700 1575600 867900 816310 839450 1555100 1117500 1827000 75483 2199500 1583100 1231700 1578900 895940 889900 821020 1477300 1 1 0 1 1 1 1 1 1 1 1 815220000 0 815220000 6737 1277;1697 6275 36577;36578 43963;43964 43964 2 GIDYDFPSLILQK Unmodified 1507.7922 0.79224564 2730 Q9BYG3 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes yes 0 0 0 0 By matching By MS/MS 7 0 2 1 1 79.048 79.097 2 0.00013796 27886 20211116_3446_TMUAki_TMT10x_S_F7 96.665 79.725 4863800 7499000 26378 7051400 5641500 4825700 5679900 4045600 3865700 4020600 5027200 4528900 6995700 438720 7191900 5411900 5035900 5703200 4151900 4053300 3927800 4813600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4863800 7499000 26378 7051400 5641500 4825700 5679900 4045600 3865700 4020600 5027200 4528900 6995700 438720 7191900 5411900 5035900 5703200 4151900 4053300 3927800 4813600 1 1 1 1 1 1 1 1 1 1 1 1092200000 306210000 786000000 6738 2730 6276 36579;36580 43965 43965 1 GIEDNPMVVPLCNR Oxidation (M) 1628.7651 0.76506139 820 P26640 VARS Valine--tRNA ligase yes yes 0 0 1 0 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 48.181 47.832 2;3 4.4487E-06 13566 20211116_3431_TMUAki_TMT10x_P_F4 96.113 75.784 1299700 2172300 25850 2565200 1218700 1085300 1295300 1619000 1535200 1460300 1918100 1210300 2028400 130710 2567000 1172100 1208900 1317300 1614400 1564900 1432700 1838500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1299700 2172300 25850 2565200 1218700 1085300 1295300 1619000 1535200 1460300 1918100 1210300 2028400 130710 2567000 1172100 1208900 1317300 1614400 1564900 1432700 1838500 1 1 1 1 1 1 1 1 1 1 1 121790000 0 121790000 6739 820 6277 36581;36582;36583 43966;43967;43968 43966 983 3 GIEDNPMVVPLCNR Unmodified 1612.7701 0.77014677 820 P26640 VARS Valine--tRNA ligase yes yes 0 0 0 0 By MS/MS 5 0 1 1 57.618 57.753 3 0.0013476 16695 20211116_3444_TMUAki_TMT10x_S_F5 66.215 51.013 5721200 9630900 0 10101000 6179300 5802700 6094100 7180000 7174600 7006000 7790000 5326500 8988400 411930 10207000 5918400 6207500 6219400 7225400 7273500 6849600 7495700 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5721200 9630900 0 10101000 6179300 5802700 6094100 7180000 7174600 7006000 7790000 5326500 8988400 411930 10207000 5918400 6207500 6219400 7225400 7273500 6849600 7495700 2 2 0 2 2 2 2 2 2 2 2 351580000 0 351580000 6740 820 6277 36584 43969;43970 43969 2 GIEEEEILPGFILCDPNNLCHSGR Unmodified 2768.2898 0.28979937 681 P15170-3;P15170-2;P15170 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.745 3 2 1 3 3 77.306 77.254 3 1.4119E-35 27101 20211116_3439_TMUAki_TMT10x_S_F1 181.61 177.58 12489000 20858000 190260 18078000 13154000 20920000 15188000 13969000 11833000 13728000 15958000 11629000 19453000 1197100 18681000 12673000 20981000 15195000 14546000 12331000 13417000 15267000 5 5 3 5 5 5 5 5 5 5 5 8246500 13990000 117390 11602000 7699700 16183000 10315000 9507200 8127800 9407800 11092000 7679000 13045000 766640 12074000 7454500 16053000 10259000 10000000 8469500 9192300 10608000 3 3 2 3 3 3 3 3 3 3 3 4242200 6868400 72864 6475300 5454000 4737400 4872400 4461300 3705400 4320000 4866500 3950400 6407500 430430 6607700 5218900 4927200 4936600 4545700 3861900 4224900 4658600 2 2 1 2 2 2 2 2 2 2 2 6030200000 4693900000 1336300000 6741 681 6278 36585;36586;36587;36588;36589;36590 43971;43972;43973;43974;43975;43976;43977 43974 7 GIEELFLDLCKR Unmodified 1491.7755 0.77554972 3165 Q9UL25 RAB21 Ras-related protein Rab-21 yes yes 0 0 0 1 By MS/MS By MS/MS 6.2 1.33 1 2 1 1 2 3 77.622 77.616 3 6.8472E-16 25158 20211116_3445_TMUAki_TMT10x_S_F6 169.89 98.716 17303000 29565000 147090 25628000 21533000 24223000 20657000 16087000 14877000 16388000 21001000 16112000 27573000 1609900 26402000 20632000 24580000 20821000 16776000 15605000 15993000 20069000 2 2 1 2 2 2 2 2 2 2 2 6169800 10090000 0 8833900 6020100 12082000 7298200 6077100 5508600 6539800 7198000 5744500 9410000 488480 9149300 5803200 11973000 7280700 6495600 5742300 6368100 6891300 1 1 0 1 1 1 1 1 1 1 1 11133000 19476000 147090 16794000 15513000 12141000 13359000 10010000 9368400 9848200 13803000 10367000 18163000 1121400 17252000 14829000 12607000 13540000 10280000 9862700 9625000 13178000 1 1 1 1 1 1 1 1 1 1 1 2480500000 925290000 1555200000 6742 3165 6279 36591;36592;36593;36594;36595 43978;43979;43980;43981 43980 4 GIEESLRK Unmodified 930.51345 0.51344502 1866 Q16836;Q16836-3;Q16836-2 HADH Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial yes no 0 0 0 1 By matching By MS/MS 5 0 2 1 1 34.447 34.512 3 0.028936 7174 20211116_3444_TMUAki_TMT10x_S_F5 58.596 0 715160 1162900 7057.4 1160000 772470 750080 797300 731400 794810 686830 922840 665940 1085100 66672 1177400 741740 788990 807360 743250 813240 672630 886270 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 715160 1162900 7057.4 1160000 772470 750080 797300 731400 794810 686830 922840 665940 1085100 66672 1177400 741740 788990 807360 743250 813240 672630 886270 1 1 1 1 1 1 1 1 1 1 1 50617000 30497000 20120000 6743 1866 6280 36596;36597 43982 43982 1 GIEILTDMSRPVELSDR Oxidation (M) 1945.9779 0.97789093 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 1 1 By MS/MS 4 0 1 1 55.438 55.42 3 0.00033173 17034 20211116_3442_TMUAki_TMT10x_S_F4 74.12 61.139 2330900 4078000 20611 3996700 2547700 2445300 2400300 4790700 3960900 3837000 3871800 2170500 3804900 215490 4059800 2440400 2639500 2490800 4723900 3958100 3786700 3737700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2330900 4078000 20611 3996700 2547700 2445300 2400300 4790700 3960900 3837000 3871800 2170500 3804900 215490 4059800 2440400 2639500 2490800 4723900 3958100 3786700 3737700 1 1 1 1 1 1 1 1 1 1 1 591170000 0 591170000 6744 1147 6281 36598 43983 43983 1521 1 GIEILTDMSRPVELSDRETLLNSATTSLNSK Oxidation (M) 3405.7297 0.72972832 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 1 2 By MS/MS By MS/MS 6.19 1.29 2 3 4 4 3 9 7 69.439 69.528 4;5 2.5566E-35 22035 20211116_3436_TMUAki_TMT10x_P_F8 164.01 148.56 186290000 319510000 1725400 263810000 239650000 367030000 242210000 325360000 333460000 316510000 291220000 173460000 297930000 16411000 274600000 229870000 366600000 248380000 332640000 333750000 309490000 282230000 31 31 21 31 31 31 31 31 31 31 31 98588000 158900000 980370 138470000 100050000 226100000 114450000 162170000 164130000 153680000 147120000 91798000 148190000 8592500 144020000 96317000 223500000 116880000 167850000 164200000 150440000 142450000 19 19 13 19 19 19 19 19 19 19 19 87707000 160620000 745000 125330000 139600000 140920000 127760000 163190000 169330000 162840000 144100000 81662000 149740000 7818800 130590000 133550000 143100000 131500000 164790000 169550000 159050000 139790000 12 12 8 12 12 12 12 12 12 12 12 46377000000 24248000000 22129000000 6745 1147 6282 36599;36600;36601;36602;36603;36604;36605;36606;36607;36608;36609;36610;36611;36612;36613;36614 43984;43985;43986;43987;43988;43989;43990;43991;43992;43993;43994;43995;43996;43997;43998;43999;44000;44001;44002;44003;44004;44005;44006;44007;44008;44009;44010;44011;44012;44013;44014 44000 1521 31 GIEILTDMSRPVELSDRETLLNSATTSLNSK Unmodified 3389.7348 0.7348137 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 2 By MS/MS By MS/MS 6.33 1.18 1 2 3 4 2 7 5 76.833 76.857 3;4;5 1.6634E-45 24831 20211116_3445_TMUAki_TMT10x_S_F6 191.54 166.71 92632000 146500000 227720 146900000 105150000 89499000 118640000 43542000 31624000 54040000 95819000 86246000 136700000 7308100 148980000 101130000 93683000 116950000 46904000 38258000 52346000 90445000 9 9 4 9 9 9 9 9 9 9 9 25020000 39922000 68949 40281000 22774000 38332000 30558000 16570000 13221000 18147000 27810000 23294000 37252000 1744600 41038000 22013000 38682000 30052000 17993000 14727000 17658000 26376000 4 4 3 4 4 4 4 4 4 4 4 67613000 106580000 158770 106620000 82381000 51166000 88085000 26972000 18403000 35893000 68008000 62952000 99452000 5563600 107940000 79118000 55002000 86893000 28911000 23531000 34688000 64070000 5 5 1 5 5 5 5 5 5 5 5 26102000000 10796000000 15306000000 6746 1147 6282 36615;36616;36617;36618;36619;36620;36621;36622;36623;36624;36625;36626 44015;44016;44017;44018;44019;44020;44021;44022;44023 44020 9 GIEKPPFELPDFIKR Unmodified 1784.9825 0.98250603 1633 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 0 2 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 67.145 67.004 4 7.3562E-14 23034 20211116_3439_TMUAki_TMT10x_S_F1 141.86 121.97 9111200 17239000 279530 12607000 14337000 28621000 12976000 35939000 23220000 22634000 18922000 8485500 16069000 1084000 13428000 13729000 28334000 13550000 35773000 23022000 22654000 18386000 3 3 2 3 3 3 3 3 3 3 3 4701200 8403400 228110 6048800 5122000 19328000 6361000 18873000 11319000 11067000 9187500 4378900 7832400 608250 6535600 4956200 18861000 6540900 18978000 11223000 11130000 8928800 1 1 1 1 1 1 1 1 1 1 1 4410100 8835700 51422 6558700 9214800 9292700 6614800 17067000 11901000 11567000 9734500 4106600 8236100 475790 6892700 8773000 9472900 7009300 16795000 11799000 11524000 9457600 2 2 1 2 2 2 2 2 2 2 2 1937000000 718190000 1218800000 6747 1633 6283 36627;36628;36629 44024;44025;44026 44026 3 GIEMSEVR Unmodified 919.44332 0.44331654 582 P09622;P09622-3;P09622-2 DLD Dihydrolipoyl dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS 2 0 1 1 35.746 35.846 2 0.0030075 8492 20211116_3440_TMUAki_TMT10x_S_F2 100.39 55.698 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6748 582 6284 36630 44027 44027 1 GIEQAVQSHAVAEEEAR Unmodified 1822.881 0.88095408 1872 Q16891;Q16891-2;Q16891-4;Q16891-3 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 38.139 38.186 3 6.1452E-22 10948 20211116_3429_TMUAki_TMT10x_P_F2 148.26 41.131 1248200 1898800 8411.3 3137900 3893500 2279600 1521200 1052100 1393500 984020 1885400 1162100 1776400 127320 3100800 3672800 2347700 1663100 1129600 1440700 963850 1803500 3 3 2 3 3 3 3 3 3 3 3 973110 1428700 0 2538800 3570100 2056300 1194300 748350 1063500 709120 1470200 905890 1337300 95994 2504400 3362000 2095200 1331600 825710 1102100 694180 1405600 1 1 0 1 1 1 1 1 1 1 1 275140 470140 8411.3 599120 323460 223340 326980 303740 329980 274900 415230 256240 439170 31327 596470 310750 252510 331580 303910 338590 269670 397910 2 2 2 2 2 2 2 2 2 2 2 613930000 431240000 182690000 6749 1872 6285 36631;36632;36633 44028;44029;44030;44031 44029 4 GIEQAVQSHAVAEEEARK Unmodified 1950.9759 0.9759171 1872 Q16891;Q16891-2;Q16891-4;Q16891-3 IMMT MICOS complex subunit MIC60 yes no 0 0 0 1 By MS/MS 3 0 1 1 38.956 38.685 4 1.6143E-17 12479 20211116_3441_TMUAki_TMT10x_S_F3 150.61 130.78 1061700 1794000 16873 2992700 951940 810050 798240 1149600 1228400 1018900 1372900 988620 1678500 96500 2935700 909550 967480 831050 1147800 1236000 1000500 1319900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1061700 1794000 16873 2992700 951940 810050 798240 1149600 1228400 1018900 1372900 988620 1678500 96500 2935700 909550 967480 831050 1147800 1236000 1000500 1319900 2 2 1 2 2 2 2 2 2 2 2 74186000 0 74186000 6750 1872 6286 36634 44032;44033 44032 2 GIFEPFGR Unmodified 921.47085 0.47085192 1711 Q14498;Q14498-2;Q14498-3 RBM39 RNA-binding protein 39 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 1.12 2 2 2 2 4 4 59.434 59.659 2 0.00029786 17362 20211116_3434_TMUAki_TMT10x_P_F6 187.63 86.422 73444000 116120000 73502 116170000 89110000 117770000 82109000 92554000 85858000 90635000 93982000 68374000 108350000 5106700 118530000 85189000 119310000 83769000 95318000 87470000 88598000 90410000 9 9 2 9 9 9 9 9 9 9 9 44718000 69118000 73502 68514000 57078000 90128000 52542000 57009000 52659000 54864000 56372000 41630000 64492000 3082300 70262000 54563000 89739000 53536000 59570000 53698000 53672000 54265000 5 5 2 5 5 5 5 5 5 5 5 28726000 47003000 0 47658000 32032000 27645000 29567000 35546000 33198000 35771000 37610000 26744000 43861000 2024400 48273000 30626000 29575000 30233000 35749000 33771000 34927000 36144000 4 4 0 4 4 4 4 4 4 4 4 11632000000 5587500000 6044900000 6751 1711 6287 36635;36636;36637;36638;36639;36640;36641;36642 44034;44035;44036;44037;44038;44039;44040;44041;44042 44035 9 GIFFSHR Unmodified 862.44497 0.44497152 782 P23381;P23381-2 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 0 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 37.501 37.448 3 0.0010009 8950 20211116_3440_TMUAki_TMT10x_S_F2 122.98 57.307 185070 279520 0 323630 177560 147480 176990 276490 285330 263890 273190 172280 260980 10402 324410 169920 164010 182910 274230 285100 258240 263910 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 185070 279520 0 323630 177560 147480 176990 276490 285330 263890 273190 172280 260980 10402 324410 169920 164010 182910 274230 285100 258240 263910 2 2 0 2 2 2 2 2 2 2 2 33526000 12949000 20577000 6752 782 6288 36643;36644;36645;36646 44043;44044;44045 44044 3 GIFNGFSVTLK Unmodified 1181.6445 0.64445919 1466 Q00325-2;Q00325 SLC25A3 Phosphate carrier protein, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 3.6 0.49 2 3 2 3 75.869 75.789 2;3 4.9942E-16 25305 20211116_3442_TMUAki_TMT10x_S_F4 211.79 120.75 45313000 74410000 339000 74918000 42676000 56608000 50681000 33089000 35962000 37732000 46594000 42192000 69434000 3832400 76119000 41128000 58269000 50534000 34968000 37606000 36660000 44618000 6 6 2 6 6 6 6 6 6 6 6 20412000 32442000 0 32335000 16137000 30377000 19244000 14855000 16786000 17001000 21160000 19004000 30272000 1496100 32965000 15542000 30718000 19281000 15951000 17340000 16516000 20277000 2 2 0 2 2 2 2 2 2 2 2 24902000 41968000 339000 42583000 26539000 26231000 31438000 18233000 19176000 20731000 25434000 23188000 39163000 2336300 43153000 25586000 27552000 31253000 19017000 20267000 20144000 24341000 4 4 2 4 4 4 4 4 4 4 4 2872100000 1620900000 1251200000 6753 1466 6289 36647;36648;36649;36650;36651 44046;44047;44048;44049;44050;44051 44049 6 GIFNGFSVTLKEDGVR Unmodified 1737.905 0.90498399 1466 Q00325-2;Q00325 SLC25A3 Phosphate carrier protein, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 4.14 3.09 2 2 1 2 4 3 66.821 66.704 3 2.561E-21 22838 20211116_3439_TMUAki_TMT10x_S_F1 170.61 136.77 83654000 146530000 647340 109880000 101670000 117430000 99786000 77104000 70492000 77526000 100060000 77893000 136590000 7538400 114790000 97462000 118260000 100410000 80442000 74045000 75699000 95611000 11 11 6 11 11 11 11 11 11 11 11 35734000 59796000 89492 44528000 34483000 63000000 40820000 31246000 27875000 31179000 40611000 33270000 55739000 2809900 46780000 33214000 62328000 40673000 33370000 29376000 30454000 38781000 4 4 1 4 4 4 4 4 4 4 4 47920000 86736000 557850 65350000 67188000 54429000 58967000 45858000 42617000 46347000 59452000 44623000 80854000 4728500 68015000 64248000 55929000 59736000 47072000 44668000 45245000 56830000 7 7 5 7 7 7 7 7 7 7 7 7647900000 4097600000 3550300000 6754 1466 6290 36652;36653;36654;36655;36656;36657;36658 44052;44053;44054;44055;44056;44057;44058;44059;44060;44061;44062;44063 44057 12 GIFPVLCK Unmodified 932.51536 0.51535927 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 66.52 66.321 2 0.00042628 20700 20211116_3428_TMUAki_TMT10x_P_F1 145.87 104.64 95210000 144440000 555500 201990000 98066000 120360000 91310000 73020000 69476000 73698000 104700000 88651000 134990000 8095300 200770000 93871000 126590000 92297000 76651000 72885000 71949000 99910000 10 10 4 10 10 10 10 10 10 10 10 59676000 87853000 483040 122630000 74756000 95081000 61125000 45492000 43416000 46307000 63275000 55566000 82106000 5377400 122240000 71351000 97447000 62167000 48780000 45648000 45192000 60425000 6 6 3 6 6 6 6 6 6 6 6 35534000 56585000 72460 79354000 23310000 25281000 30184000 27528000 26060000 27391000 41425000 33085000 52885000 2717800 78538000 22520000 29140000 30130000 27871000 27237000 26757000 39486000 4 4 1 4 4 4 4 4 4 4 4 8320100000 4688500000 3631500000 6755 670;671 6291 36659;36660;36661;36662;36663;36664;36665;36666 44064;44065;44066;44067;44068;44069;44070;44071;44072;44073 44064 10 GIFPVLCKDPVQEAWAEDVDLR Unmodified 2556.2683 0.2682593 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 1 By MS/MS By MS/MS 4.85 1.84 1 2 4 4 6 4 4 2 14 13 78.544 78.533 3;4 9.4082E-45 25134 20211116_3434_TMUAki_TMT10x_P_F6 209.71 195.35 391310000 662780000 2879300 570960000 484450000 511440000 566200000 179460000 134990000 237950000 439860000 364340000 618100000 33355000 588070000 466540000 517230000 556700000 200970000 167020000 229980000 414880000 28 28 11 28 28 28 28 28 28 28 28 206250000 345110000 1275600 298750000 239780000 333290000 298730000 95875000 76272000 123470000 224600000 192030000 321850000 16548000 308570000 231320000 332060000 293050000 110290000 92592000 119450000 212080000 16 16 6 16 16 16 16 16 16 16 16 185060000 317670000 1603700 272210000 244670000 178160000 267470000 83585000 58722000 114480000 215260000 172320000 296250000 16807000 279500000 235210000 185170000 263650000 90681000 74429000 110530000 202810000 12 12 5 12 12 12 12 12 12 12 12 70929000000 36489000000 34439000000 6756 670;671 6292 36667;36668;36669;36670;36671;36672;36673;36674;36675;36676;36677;36678;36679;36680;36681;36682;36683;36684;36685;36686;36687;36688;36689;36690;36691;36692;36693 44074;44075;44076;44077;44078;44079;44080;44081;44082;44083;44084;44085;44086;44087;44088;44089;44090;44091;44092;44093;44094;44095;44096;44097;44098;44099;44100;44101;44102;44103 44085 30 GIFTSEIGTK Unmodified 1051.555 0.55497548 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 54.857 55.211 2 4.167E-25 17401 20211116_3435_TMUAki_TMT10x_P_F7 258.47 185.21 31555000 51738000 207350 60160000 42780000 43792000 31228000 52760000 52489000 45527000 49278000 29382000 48309000 2921400 60533000 40739000 45823000 32938000 52974000 52354000 44762000 47636000 6 6 4 6 6 6 6 6 6 6 6 9637500 15166000 121580 18587000 23839000 27071000 14653000 16060000 16153000 14198000 14914000 8974300 14164000 1111200 18847000 22634000 26808000 15390000 16829000 16323000 13943000 14425000 2 2 2 2 2 2 2 2 2 2 2 21917000 36572000 85767 41573000 18942000 16721000 16575000 36700000 36336000 31329000 34364000 20408000 34145000 1810200 41687000 18105000 19016000 17548000 36145000 36031000 30819000 33211000 4 4 2 4 4 4 4 4 4 4 4 2522100000 1451100000 1071000000 6757 1433 6293 36694;36695;36696;36697 44104;44105;44106;44107;44108;44109 44105 6 GIGEFFR Unmodified 824.41809 0.41808807 1747 Q15004 KIAA0101 PCNA-associated factor yes yes 0 0 0 0 By MS/MS 7 0 1 1 55.815 56.341 2 0.0071632 18403 20211116_3446_TMUAki_TMT10x_S_F7 117.62 70.819 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6758 1747 6294 36698 44110 44110 1 GIGIENIHYLNDGLWHMK Oxidation (M) 2125.0415 0.041494244 3168 Q9ULC4;Q9ULC4-2;Q9ULC4-3 MCTS1 Malignant T-cell-amplified sequence 1 yes no 0 0 1 0 By MS/MS By MS/MS 7 0 2 1 1 61.754 62.34 4 2.1757E-06 20305 20211116_3435_TMUAki_TMT10x_P_F7 97.579 86.524 9681400 16923000 172560 16200000 13114000 15533000 11784000 11787000 10220000 11672000 12753000 9015600 15788000 1011500 16568000 12551000 15781000 11974000 12170000 10556000 11404000 12224000 2 2 2 2 2 2 2 2 2 2 2 4172400 7479400 143910 6848300 6109500 9863600 6130100 4981400 4355600 4967500 5366900 3886000 6976700 507170 7076000 5867300 9752700 6162000 5310800 4544600 4852100 5145900 1 1 1 1 1 1 1 1 1 1 1 5509000 9443500 28654 9352200 7004200 5668900 5654200 6805300 5864900 6704700 7386400 5129600 8811500 504380 9492200 6683800 6027800 5812400 6858800 6011300 6552300 7078300 1 1 1 1 1 1 1 1 1 1 1 1963000000 1248500000 714540000 6759 3168 6295 36699;36700 44111;44112 44111 3174 2 GIGMGNIGPAGMGMEGIGFGINK Oxidation (M) 2193.0381 0.038065125 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 1 0 By MS/MS By MS/MS 3.5 3.2 3 1 2 3 3 77.117 77.087 3 5.1418E-18 26918 20211116_3439_TMUAki_TMT10x_S_F1 128.79 114.1 15841000 25439000 102240 25098000 17452000 20444000 20190000 10871000 8518100 11639000 16983000 14750000 23736000 1401500 25558000 16807000 20899000 19975000 11559000 9476800 11335000 16121000 3 3 1 3 3 3 3 3 3 3 3 12441000 18701000 102240 19419000 11765000 16808000 14846000 6994500 5488200 8008500 12100000 11584000 17453000 1097600 19721000 11363000 17063000 14608000 7637100 6227400 7779700 11468000 2 2 1 2 2 2 2 2 2 2 2 3399700 6737600 0 5678400 5687200 3636100 5343900 3876200 3029900 3630300 4882600 3165400 6282900 303920 5837200 5443900 3835600 5366900 3921600 3249400 3555700 4652700 1 1 0 1 1 1 1 1 1 1 1 4492600000 2274500000 2218200000 6760 1171 6296 36701;36702;36703;36704;36705;36706 44113;44114;44115;44116;44117 44116 1563;1564;1565 5 GIGMGNIGPAGMGMEGIGFGINK 3 Oxidation (M) 2225.0279 0.027894369 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 3 0 By MS/MS By MS/MS 7.38 0.625 1 6 6 7 6 63.34 63.667 2;3;4 1.0117E-12 21454 20211116_3446_TMUAki_TMT10x_S_F7 121.21 105.27 59493000 101130000 529240 83522000 73720000 125310000 76612000 137400000 151920000 129560000 104550000 55395000 94302000 4096800 87075000 70768000 125350000 79891000 138850000 149580000 126860000 102320000 20 20 8 20 20 20 20 20 20 20 20 27342000 47162000 74682 36468000 31150000 76464000 34752000 66923000 71913000 61895000 46138000 25457000 43967000 1893600 38557000 29950000 75215000 36212000 68374000 70618000 60657000 45306000 9 9 3 9 9 9 9 9 9 9 9 32151000 53972000 454560 47054000 42570000 48843000 41860000 70475000 80008000 67668000 58409000 29938000 50336000 2203200 48518000 40818000 50134000 43678000 70478000 78959000 66204000 57013000 11 11 5 11 11 11 11 11 11 11 11 21909000000 12474000000 9435400000 6761 1171 6296 36707;36708;36709;36710;36711;36712;36713;36714;36715;36716;36717;36718;36719 44118;44119;44120;44121;44122;44123;44124;44125;44126;44127;44128;44129;44130;44131;44132;44133;44134;44135;44136;44137;44138 44131 1563;1564;1565 21 GIGMGNIGPAGMGMEGIGFGINK 2 Oxidation (M) 2209.033 0.032979747 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 2 0 By MS/MS By MS/MS 7.1 2.07 1 2 7 5 5 70.712 70.733 2;3;4 3.2237E-11 22195 20211116_3447_TMUAki_TMT10x_S_F8 111.66 98.717 43583000 69655000 349470 64331000 47429000 70475000 52266000 35885000 30019000 40783000 51631000 40580000 64975000 3731700 66096000 45603000 70639000 52074000 38378000 32280000 39629000 49138000 11 11 7 11 11 11 11 11 11 11 11 29230000 46217000 313950 43216000 29453000 54991000 35774000 25195000 20235000 27213000 34872000 27217000 43114000 2589400 44475000 28410000 54625000 35476000 27180000 21785000 26495000 33187000 7 7 5 7 7 7 7 7 7 7 7 14353000 23438000 35519 21116000 17976000 15484000 16491000 10690000 9784100 13570000 16759000 13363000 21861000 1142200 21621000 17193000 16014000 16598000 11197000 10495000 13135000 15951000 4 4 2 4 4 4 4 4 4 4 4 13592000000 7228100000 6364400000 6762 1171 6296 36720;36721;36722;36723;36724;36725;36726;36727;36728;36729 44139;44140;44141;44142;44143;44144;44145;44146;44147;44148;44149;44150 44149 1563;1564;1565 12 GIGMGNIGPAGMGMEGIGFGINK Unmodified 2177.0432 0.043150503 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By matching By MS/MS 2 0 2 1 1 78.649 78.622 3 0.0027529 25938 20211116_3440_TMUAki_TMT10x_S_F2 54.857 43.417 3793000 7698100 0 6915000 6444600 3906100 6231400 3598300 3255900 4009500 4831000 3531500 7180300 333880 7064700 6172800 4158000 6239800 3686300 3498400 3898900 4611500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3793000 7698100 0 6915000 6444600 3906100 6231400 3598300 3255900 4009500 4831000 3531500 7180300 333880 7064700 6172800 4158000 6239800 3686300 3498400 3898900 4611500 1 1 0 1 1 1 1 1 1 1 1 1920700000 1131800000 788890000 6763 1171 6296 36730;36731 44151 44151 1 GIGQEHFFK Unmodified 1061.5294 0.52942943 249 O43823 AKAP8 A-kinase anchor protein 8 yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 42.741 43.056 3 0.0016054 12969 20211116_3446_TMUAki_TMT10x_S_F7 75.509 54.061 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6764 249 6297 36732;36733 44152;44153 44153 2 GIGTLHLKPTANQK Unmodified 1476.8413 0.84126152 3162 Q9UKX7;Q9UKX7-2 NUP50 Nuclear pore complex protein Nup50 yes no 0 0 0 1 By MS/MS 3 0 1 1 39.24 38.969 4 0.020208 12603 20211116_3441_TMUAki_TMT10x_S_F3 53.351 38.378 1823900 2791100 0 3082000 1547600 1380600 1661900 1927100 2316300 1724600 2526900 1698200 2605500 144010 3098200 1486600 1523700 1700000 1925700 2335300 1692700 2431100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1823900 2791100 0 3082000 1547600 1380600 1661900 1927100 2316300 1724600 2526900 1698200 2605500 144010 3098200 1486600 1523700 1700000 1925700 2335300 1692700 2431100 1 1 0 1 1 1 1 1 1 1 1 83267000 0 83267000 6765 3162 6298 36734 44154 44154 1 GIHPTIISESFQK Unmodified 1455.7722 0.7721789 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 By MS/MS By MS/MS 5.57 2.66 1 1 1 2 2 4 3 49.804 49.944 3 2.6858E-23 13595 20211116_3447_TMUAki_TMT10x_S_F8 213.63 188.41 33980000 58043000 683810 69193000 36795000 51351000 33201000 46766000 50304000 46923000 47311000 31644000 54202000 3488700 69534000 35232000 53310000 34394000 47785000 50321000 45821000 45732000 8 8 7 8 8 8 8 8 8 8 8 12420000 20510000 191260 21922000 21338000 32504000 16367000 18600000 18907000 17854000 17689000 11566000 19143000 1327600 22422000 20347000 32147000 16940000 19591000 19080000 17468000 17101000 4 4 3 4 4 4 4 4 4 4 4 21560000 37533000 492540 47271000 15457000 18847000 16834000 28166000 31397000 29069000 29622000 20078000 35059000 2161000 47112000 14885000 21163000 17454000 28194000 31241000 28353000 28630000 4 4 4 4 4 4 4 4 4 4 4 4813100000 2510800000 2302400000 6766 1147 6299 36735;36736;36737;36738;36739;36740;36741 44155;44156;44157;44158;44159;44160;44161 44160 7 GIHSAIDASQTPDVVFASILAAFSK Unmodified 2544.3224 0.32240336 1228 P54819;P54819-5;P54819-2;P54819-6 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 4 0 3 1 2 82.41 82.406 3;4 6.6963E-17 28094 20211116_3442_TMUAki_TMT10x_S_F4 124.81 111.77 1786700 2594500 34304 2402200 2128800 2379600 2142800 1698000 1864700 1824800 2216300 1663700 2420200 174600 2463800 2043000 2410200 2164200 1764600 1921700 1777000 2127100 3 3 2 3 3 3 3 3 3 3 3 489910 819130 19528 762080 566290 1035300 546790 566820 565640 601690 619950 456300 764120 59886 785560 543680 1027300 556240 600980 576550 586210 596360 1 1 1 1 1 1 1 1 1 1 1 1296700 1775400 14776 1640100 1562500 1344300 1596000 1131200 1299100 1223100 1596400 1207400 1656100 114710 1678300 1499300 1382900 1608000 1163700 1345100 1190700 1530800 2 2 1 2 2 2 2 2 2 2 2 473910000 241730000 232180000 6767 1228 6300 36742;36743;36744 44162;44163;44164 44164 3 GIHVEVPPAEAER Unmodified 1402.7205 0.72047768 968 P38117;P38117-2 ETFB Electron transfer flavoprotein subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 35.9 35.78 3 0.00059372 11459 20211116_3441_TMUAki_TMT10x_S_F3 71.888 48.568 852220 1390100 7425.8 1575900 2075700 1895900 1204300 1087500 1082100 930500 1336300 793550 1297800 94710 1599300 1968800 1893500 1263300 1141800 1115200 915240 1281200 3 3 3 3 3 3 3 3 3 3 3 852220 1390100 7425.8 1575900 2075700 1895900 1204300 1087500 1082100 930500 1336300 793550 1297800 94710 1599300 1968800 1893500 1263300 1141800 1115200 915240 1281200 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 53077000 53077000 0 6768 968 6301 36745;36746;36747 44165;44166;44167;44168 44168 4 GIIASSVGTILK Unmodified 1157.702 0.70197407 709 P17812 CTPS1 CTP synthase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 3 3 3 3 68.486 68.149 2;3 4.6063E-24 23521 20211116_3430_TMUAki_TMT10x_P_F3 247.54 169.81 29356000 48597000 2092400 54271000 36712000 49283000 33700000 35720000 30186000 33133000 39879000 27349000 45368000 4486900 54890000 35252000 50209000 34232000 36924000 31207000 32466000 38170000 7 7 7 7 7 7 7 7 7 7 7 14733000 23258000 1025800 26106000 20081000 33439000 19094000 17642000 15139000 16103000 19244000 13726000 21713000 2252400 26541000 19292000 33258000 19297000 18688000 15720000 15791000 18437000 3 3 3 3 3 3 3 3 3 3 3 14623000 25339000 1066600 28165000 16631000 15843000 14605000 18078000 15047000 17029000 20636000 13623000 23655000 2234500 28349000 15960000 16950000 14935000 18236000 15487000 16675000 19733000 4 4 4 4 4 4 4 4 4 4 4 3433900000 1604400000 1829500000 6769 709 6302 36748;36749;36750;36751;36752;36753 44169;44170;44171;44172;44173;44174;44175 44171 7 GIIDPTK Unmodified 742.4225 0.42250475 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4.6 1.36 3 2 2 2 1 5 5 41.429 41.55 2 0.0022084 11042 20211116_3431_TMUAki_TMT10x_P_F4 128.57 28.5 33333000 53945000 102910 51044000 47242000 51252000 40049000 35554000 39275000 32346000 42673000 31037000 50326000 3005400 52281000 45120000 51846000 40976000 36845000 40110000 31723000 41060000 8 8 5 8 8 8 8 8 8 8 8 22770000 36225000 90081 34433000 35199000 41958000 27274000 24564000 27220000 22082000 28687000 21202000 33795000 2116700 35366000 33555000 41889000 28078000 25778000 27746000 21669000 27628000 4 4 3 4 4 4 4 4 4 4 4 10563000 17721000 12830 16611000 12043000 9293500 12775000 10990000 12055000 10264000 13986000 9835300 16531000 888650 16915000 11565000 9957000 12897000 11067000 12364000 10054000 13432000 4 4 2 4 4 4 4 4 4 4 4 3672300000 2159000000 1513400000 6770 613 6303 36754;36755;36756;36757;36758;36759;36760;36761;36762;36763 44176;44177;44178;44179;44180;44181;44182;44183;44184;44185 44178 10 GIIDSTVSDQR Unmodified 1189.5939 0.59388018 737 P20020;P20020-5;P20020-2;P20020-6;P20020-4;P20020-1 ATP2B1 Plasma membrane calcium-transporting ATPase 1 yes no 0 0 0 0 By MS/MS 4 0 1 1 36.703 36.836 2 3.7748E-13 9524 20211116_3442_TMUAki_TMT10x_S_F4 179.8 136.94 100680 175210 3194 228060 110610 88120 107170 137350 161590 114550 177330 93766 163680 11463 226830 106170 99509 110570 136480 162570 112820 170580 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100680 175210 3194 228060 110610 88120 107170 137350 161590 114550 177330 93766 163680 11463 226830 106170 99509 110570 136480 162570 112820 170580 1 1 1 1 1 1 1 1 1 1 1 5272200 0 5272200 6771 737 6304 36764 44186 44186 1 GIINDDEDDEDLMMASGRPR 2 Oxidation (M) 2279.9634 0.96343944 355 O75717;O75717-2 WDHD1 WD repeat and HMG-box DNA-binding protein 1 yes no 0 0 2 1 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 39.967 39.949 3 5.0778E-09 10016 20211116_3440_TMUAki_TMT10x_S_F2 114.4 106.01 503280 840820 938.8 1133800 837140 1079000 563190 1207600 1363500 931850 979170 468580 785670 43082 1135200 795580 1105500 610370 1213100 1338500 921450 956470 4 4 2 4 4 4 4 4 4 4 4 203150 332730 0 461040 597440 822380 389930 527000 538020 376810 371710 189120 310960 19027 466680 567420 808860 410950 546230 534960 374200 363720 1 1 0 1 1 1 1 1 1 1 1 300130 508080 938.8 672800 239700 256630 173260 680630 825500 555030 607460 279450 474710 24055 668510 228170 296630 199410 666860 803520 547250 592750 3 3 2 3 3 3 3 3 3 3 3 152150000 101150000 51004000 6772 355 6305 36765;36766;36767 44187;44188;44189;44190 44190 275;276 4 GIIPLENLSIR Unmodified 1223.7238 0.72377215 240 Q99418;Q15438;O43739;Q15438-3;Q15438-2;Q99418-2;O43739-2 CYTH2;CYTH1;CYTH3 Cytohesin-2;Cytohesin-1;Cytohesin-3 yes no 0 0 0 0 By MS/MS 8 0 1 1 69.762 69.594 2 0.00010514 21614 20211116_3447_TMUAki_TMT10x_S_F8 96.342 67.83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6773 240 6306 36768 44191 44191 1 GIISAADRLEAAEMYR Oxidation (M) 1780.8778 0.87778296 618 P11172;P11172-2;P11172-3;P11172-4 UMPS Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase yes no 0 0 1 1 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 53.824 53.944 3 1.3733E-05 15146 20211116_3444_TMUAki_TMT10x_S_F5 97.904 86.691 19010000 32709000 251340 29709000 26394000 34829000 22663000 25320000 24700000 23249000 26004000 17701000 30509000 1821200 30597000 25223000 34952000 23246000 26161000 25085000 22791000 25045000 5 5 3 5 5 5 5 5 5 5 5 10504000 17165000 174790 16053000 16562000 24767000 14109000 14014000 13353000 12231000 14071000 9781000 16012000 1041000 16586000 15824000 24452000 14417000 14738000 13643000 12019000 13552000 2 2 1 2 2 2 2 2 2 2 2 8506100 15544000 76553 13656000 9831800 10062000 8553800 11306000 11347000 11017000 11933000 7920500 14497000 780270 14011000 9398700 10500000 8829800 11423000 11442000 10772000 11494000 3 3 2 3 3 3 3 3 3 3 3 1758200000 723290000 1034900000 6774 618 6307 36769;36770;36771 44192;44193;44194;44195;44196 44196 625 5 GIISAADRLEAAEMYR Unmodified 1764.8829 0.88286834 618 P11172;P11172-2;P11172-3;P11172-4 UMPS Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 57.918 58.015 3 8.531E-08 16809 20211116_3444_TMUAki_TMT10x_S_F5 117.07 101.27 13546000 23673000 110930 22434000 18372000 20767000 14886000 20172000 18285000 17286000 19295000 12613000 22085000 1241100 22949000 17532000 21245000 15387000 20453000 18489000 17001000 18582000 3 3 2 3 3 3 3 3 3 3 3 5378600 8473000 0 7939800 7240400 12459000 6786200 8115600 7168900 6797000 6911600 5007600 7904200 419100 8205100 6927600 12316000 6919100 8431100 7267300 6692600 6675300 1 1 0 1 1 1 1 1 1 1 1 8167700 15200000 110930 14494000 11132000 8308100 8099700 12056000 11116000 10489000 12383000 7605700 14181000 822050 14744000 10604000 8929600 8467800 12022000 11222000 10308000 11906000 2 2 2 2 2 2 2 2 2 2 2 844660000 506440000 338220000 6775 618 6307 36772;36773;36774;36775 44197;44198;44199 44199 3 GIISAADRLEAAEMYRK Oxidation (M) 1908.9727 0.97274598 618 P11172;P11172-2;P11172-3;P11172-4 UMPS Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase yes no 0 0 1 2 By MS/MS 7 0 1 1 50.134 50.618 4 2.5627E-05 16143 20211116_3446_TMUAki_TMT10x_S_F7 85.362 64.396 1497400 2421000 22326 2556200 1577900 1406800 1388900 2534300 2466100 2151400 1976900 1394400 2259600 146080 2581000 1509500 1529400 1452000 2508300 2444400 2116900 1922200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1497400 2421000 22326 2556200 1577900 1406800 1388900 2534300 2466100 2151400 1976900 1394400 2259600 146080 2581000 1509500 1529400 1452000 2508300 2444400 2116900 1922200 1 1 1 1 1 1 1 1 1 1 1 299790000 0 299790000 6776 618 6308 36776 44200 44200 625 1 GIIVHTMAAVEALGAK Unmodified 1579.8756 0.87559811 437 O95573 ACSL3 Long-chain-fatty-acid--CoA ligase 3 yes yes 0 0 0 0 By matching By MS/MS 3 0 2 1 1 75.689 75.526 3 1.2136E-13 27517 20211116_3441_TMUAki_TMT10x_S_F3 141 121.68 1239400 2088700 48197 2018800 1559000 1326600 1621300 974090 869120 1171200 1536100 1154400 1948700 152150 2054100 1499400 1386200 1618000 1014100 940770 1135800 1461200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1239400 2088700 48197 2018800 1559000 1326600 1621300 974090 869120 1171200 1536100 1154400 1948700 152150 2054100 1499400 1386200 1618000 1014100 940770 1135800 1461200 1 1 1 1 1 1 1 1 1 1 1 378390000 207500000 170890000 6777 437 6309 36777;36778 44201 44201 1 GIKEEVQLTSK Unmodified 1230.682 0.68196691 2350 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 1 By MS/MS 5 0 1 1 43.327 43.43 3 0.074092 12022 20211116_3433_TMUAki_TMT10x_P_F5 45.825 29.193 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6778 2350 6310 36779 44202 44202 1 GIKGEEIVQQLIENSTTFR Unmodified 2161.1379 0.13789705 3139 Q9UJA5;Q9UJA5-2;Q9UJA5-3 TRMT6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 yes no 0 0 0 1 By MS/MS 8 0 1 1 78.651 78.622 3 3.6531E-06 25266 20211116_3447_TMUAki_TMT10x_S_F8 91.725 78.957 3276100 5085700 2117.4 4835000 4344700 3737300 4092200 2936100 2821500 3110300 3484400 3050400 4744600 288550 4933800 4159700 3857000 4124700 3030900 2949500 3030500 3340700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3276100 5085700 2117.4 4835000 4344700 3737300 4092200 2936100 2821500 3110300 3484400 3050400 4744600 288550 4933800 4159700 3857000 4124700 3030900 2949500 3030500 3340700 1 1 1 1 1 1 1 1 1 1 1 659900000 0 659900000 6779 3139 6311 36780 44203 44203 1 GILAADESTGSIAK Unmodified 1331.6933 0.69325988 482 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 By MS/MS By MS/MS 4 1.07 1 4 4 4 1 7 7 50.787 50.827 2;3 1.2688E-71 16340 20211116_3430_TMUAki_TMT10x_P_F3 321.23 270.16 75511000 112230000 608300 152550000 124470000 98107000 75997000 81488000 96391000 69330000 105680000 70306000 104880000 6671500 151970000 118110000 102930000 80253000 83326000 97498000 68212000 101650000 18 18 9 18 18 18 18 18 18 18 18 32201000 46045000 269720 63153000 89686000 68634000 40463000 32331000 41136000 28504000 43224000 29982000 43029000 3441900 63300000 84755000 68766000 43638000 34589000 41893000 27996000 41632000 7 7 3 7 7 7 7 7 7 7 7 43310000 66188000 338580 89401000 34780000 29472000 35534000 49157000 55255000 40826000 62452000 40324000 61847000 3229600 88668000 33352000 34163000 36614000 48737000 55605000 40216000 60023000 11 11 6 11 11 11 11 11 11 11 11 10871000000 6337200000 4533800000 6780 482 6312 36781;36782;36783;36784;36785;36786;36787;36788;36789;36790;36791;36792;36793;36794 44204;44205;44206;44207;44208;44209;44210;44211;44212;44213;44214;44215;44216;44217;44218;44219;44220;44221;44222 44206 19 GILAADESTGSIAKR Unmodified 1487.7944 0.79437091 482 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 1 By MS/MS By MS/MS 5.29 1.03 2 2 2 1 4 3 41.18 41.27 3 6.79E-61 9896 20211116_3434_TMUAki_TMT10x_P_F6 300.49 250.34 41516000 65889000 250230 65931000 95448000 84464000 53708000 76316000 79787000 54713000 68004000 38656000 61482000 4198400 67534000 90471000 84720000 57468000 77357000 79610000 54325000 65965000 14 14 10 14 14 14 14 14 14 14 14 24744000 39372000 136300 39955000 77011000 68836000 36916000 45302000 47641000 32543000 40163000 23038000 36740000 2693700 41151000 72828000 67816000 39874000 46865000 47732000 32309000 38975000 9 9 6 9 9 9 9 9 9 9 9 16772000 26518000 113940 25976000 18437000 15628000 16792000 31014000 32146000 22170000 27841000 15617000 24742000 1504800 26383000 17643000 16905000 17594000 30492000 31878000 22017000 26990000 5 5 4 5 5 5 5 5 5 5 5 6247100000 4131100000 2116000000 6781 482 6313 36795;36796;36797;36798;36799;36800;36801 44223;44224;44225;44226;44227;44228;44229;44230;44231;44232;44233;44234;44235;44236;44237;44238 44229 16 GILADEDSSRPVWLK Unmodified 1684.8784 0.87843489 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 1 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 60.535 60.791 3 4.7569E-24 18232 20211116_3445_TMUAki_TMT10x_S_F6 191.57 167.73 203120000 300370000 2774700 344680000 187430000 182400000 185330000 103470000 81019000 110410000 219390000 189140000 280450000 17654000 346070000 179740000 194060000 184870000 109400000 91897000 107550000 207350000 11 11 9 11 11 11 11 11 11 11 11 101250000 138920000 1287100 159380000 105630000 121870000 105370000 49780000 40090000 53440000 115050000 94281000 129700000 9578400 160580000 101350000 124840000 104880000 54360000 46301000 52041000 108660000 6 6 5 6 6 6 6 6 6 6 6 101870000 161460000 1487600 185300000 81804000 60539000 79958000 53694000 40929000 56971000 104340000 94855000 150750000 8075700 185490000 78386000 69215000 79994000 55036000 45596000 55506000 98685000 5 5 4 5 5 5 5 5 5 5 5 8572000000 4471800000 4100200000 6782 1092 6314 36802;36803;36804;36805;36806;36807 44239;44240;44241;44242;44243;44244;44245;44246;44247;44248;44249 44247 11 GILFVGSGVSGGEEGAR Unmodified 1590.8002 0.80018457 1170 P52209;P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 By MS/MS By MS/MS 5 1.41 4 4 4 4 4 10 10 57.618 57.757 2;3 3.7982E-144 17973 20211116_3442_TMUAki_TMT10x_S_F4 412.94 344.2 82922000 136110000 725630 139080000 102420000 125600000 96478000 100010000 97059000 98043000 109090000 77209000 127020000 6879300 141470000 98064000 128210000 98190000 102920000 99142000 95835000 104860000 25 25 13 25 25 25 25 25 25 25 25 39906000 62525000 293160 63676000 53923000 83228000 53167000 45872000 45312000 46065000 49978000 37156000 58347000 3155300 65171000 51685000 82742000 53726000 48531000 46606000 44982000 48067000 12 12 6 12 12 12 12 12 12 12 12 43016000 73589000 432460 75401000 48500000 42371000 43311000 54141000 51747000 51978000 59114000 40053000 68673000 3724000 76300000 46378000 45467000 44465000 54388000 52536000 50854000 56797000 13 13 7 13 13 13 13 13 13 13 13 31841000000 16866000000 14975000000 6783 1170 6315 36808;36809;36810;36811;36812;36813;36814;36815;36816;36817;36818;36819;36820;36821;36822;36823;36824;36825;36826;36827 44250;44251;44252;44253;44254;44255;44256;44257;44258;44259;44260;44261;44262;44263;44264;44265;44266;44267;44268;44269;44270;44271;44272;44273;44274;44275 44264 26 GILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVK Unmodified 4035.8875 0.88750261 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 By MS/MS 7 0 1 1 98.026 98.009 5 1.3739E-16 33584 20211116_3435_TMUAki_TMT10x_P_F7 103.01 94.748 45549 83547 0 69201 43585 104050 58437 53798 59158 55581 59051 42411 77905 0 72131 42165 102720 58521 57287 60148 54210 56968 1 1 0 1 1 1 1 1 1 1 1 45549 83547 0 69201 43585 104050 58437 53798 59158 55581 59051 42411 77905 0 72131 42165 102720 58521 57287 60148 54210 56968 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2498300 2498300 0 6784 489 6316 36828 44276 44276 1 GILIPLCESGTCTLR Unmodified 1688.859 0.85896177 1669 Q13895 BYSL Bystin yes yes 0 0 0 0 By MS/MS By MS/MS 7.75 0.433 1 3 3 1 66.874 66.9 2;3 3.6404E-33 21062 20211116_3436_TMUAki_TMT10x_P_F8 202.65 148.9 5618900 11537000 103510 7698200 7303500 11933000 7067700 9014900 8008600 8639700 8461000 5232400 10751000 581160 8188000 7003000 11830000 7210500 9301800 8122300 8453500 8148100 2 2 1 2 2 2 2 2 2 2 2 3253200 6605900 103510 4176800 4740800 9110000 4822700 4831200 4138200 4865800 4639100 3029800 6154900 387010 4506400 4554000 8880200 4866400 5129000 4257700 4750800 4459700 1 1 1 1 1 1 1 1 1 1 1 2365700 4931500 0 3521400 2562700 2823200 2245000 4183700 3870400 3773900 3821900 2202700 4596300 194150 3681600 2448900 2949700 2344100 4172700 3864600 3702700 3688400 1 1 0 1 1 1 1 1 1 1 1 1043800000 645020000 398800000 6785 1669 6317 36829;36830;36831;36832 44277;44278;44279;44280 44279 4 GILLFGPPGTGK Unmodified 1155.6652 0.66519463 3187;325 O75351;Q6PIW4;Q6PIW4-2;Q9UN37 VPS4B;FIGNL1;VPS4A Vacuolar protein sorting-associated protein 4B;Fidgetin-like protein 1;Vacuolar protein sorting-associated protein 4A no no 0 0 0 0 By MS/MS By MS/MS 3.33 0.667 1 4 4 5 4 71.155 70.98 2;3 4.9881E-15 25722 20211116_3441_TMUAki_TMT10x_S_F3 186.78 143.54 39604000 65018000 435340 62956000 44594000 54093000 44358000 38217000 36002000 37315000 47175000 36878000 60661000 3667800 64239000 42773000 55296000 44748000 39631000 37388000 36481000 45163000 10 10 8 10 10 10 10 10 10 10 10 20254000 32449000 234080 31332000 23350000 35753000 24755000 18830000 17993000 19136000 24344000 18860000 30275000 1865300 32109000 22433000 35770000 24827000 20008000 18826000 18676000 23287000 5 5 4 5 5 5 5 5 5 5 5 19351000 32569000 201260 31624000 21244000 18339000 19603000 19388000 18010000 18179000 22831000 18019000 30387000 1802500 32130000 20340000 19526000 19921000 19623000 18562000 17804000 21875000 5 5 4 5 5 5 5 5 5 5 5 3919900000 1934700000 1985300000 6786 325;3187 6318 36833;36834;36835;36836;36837;36838;36839;36840;36841 44281;44282;44283;44284;44285;44286;44287;44288;44289;44290;44291 44287 11 GILLQLFGGTRK Unmodified 1301.782 0.78195573 911 P33991 MCM4 DNA replication licensing factor MCM4 yes yes 0 0 0 1 By MS/MS 8 0 1 1 71.51 71.337 3 5.7998E-08 22325 20211116_3447_TMUAki_TMT10x_S_F8 112.84 95.377 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6787 911 6319 36842 44292 44292 1 GILLYGPPGCGK Unmodified 1230.6431 0.64307898 1048 P46459;P46459-2 NSF Vesicle-fusing ATPase yes no 0 0 0 0 By MS/MS 2 0 2 2 60.103 59.871 2;3 7.3382E-15 18354 20211116_3440_TMUAki_TMT10x_S_F2 157.86 116.83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6788 1048 6320 36843;36844 44293;44294 44294 2 GILNGQK Unmodified 728.41809 0.41808807 3135 Q9UIG0;Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 28.312 28.322 2 0.0079533 7753 20211116_3433_TMUAki_TMT10x_P_F5 100.82 23.073 3108600 5023000 101.25 4211700 3720100 3938200 3458400 2202500 2723200 2637100 3554000 2894500 4684000 265330 4349800 3560300 3989800 3498900 2340000 2832100 2557600 3402700 2 2 1 2 2 2 2 2 2 2 2 2074000 3376900 0 2752900 2602600 3113600 2379100 1232600 1662900 1541900 2277900 1931100 3148700 178300 2857900 2489800 3107400 2402700 1357400 1744800 1493100 2178400 1 1 0 1 1 1 1 1 1 1 1 1034600 1646100 101.25 1458800 1117400 824610 1079300 969940 1060400 1095200 1276100 963340 1535300 87031 1491900 1070500 882440 1096200 982590 1087200 1064500 1224300 1 1 1 1 1 1 1 1 1 1 1 111170000 89793000 21381000 6789 3135 6321 36845;36846 44295;44296 44295 2 GILRPLSTR Unmodified 1011.6189 0.61891314 3287 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.311 35.366 3 8.1355E-06 8870 20211116_3433_TMUAki_TMT10x_P_F5 158.08 87.158 1697700 3031900 27719 3022900 4524300 4161700 2248100 3253100 3064400 2367600 2961100 1580900 2829000 206170 3101500 4282600 4149000 2424700 3326900 3078200 2348800 2859700 3 3 3 3 3 3 3 3 3 3 3 1148800 2005400 14842 1949800 3775000 3716600 1824800 2170600 2058300 1634500 1971500 1069800 1871000 145860 2019500 3571500 3642500 1960100 2268900 2080700 1618500 1904500 2 2 2 2 2 2 2 2 2 2 2 548890 1026500 12877 1073100 749360 445130 423370 1082500 1006100 733040 989670 511170 957970 60316 1082000 711110 506520 464530 1058000 997450 730320 955210 1 1 1 1 1 1 1 1 1 1 1 213930000 166060000 47863000 6790 3287 6322 36847;36848;36849 44297;44298;44299 44298 3 GINSSNVENQLQATQAAR Unmodified 1899.9399 0.93986594 1172 P52292 KPNA2 Importin subunit alpha-1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.7 0.9 1 3 4 2 7 3 43.974 44.095 2;3 4.853E-203 12298 20211116_3433_TMUAki_TMT10x_P_F5 434.12 395.54 16494000 27496000 170320 33365000 27825000 27996000 18042000 20888000 22674000 17374000 22860000 15357000 25678000 1156400 33543000 26434000 28692000 18955000 21491000 22871000 17114000 22047000 12 12 3 12 12 12 12 12 12 12 12 9355100 15682000 22030 19107000 22143000 22391000 13294000 11757000 12858000 9915400 13079000 8709800 14646000 643880 19300000 21003000 22369000 13934000 12435000 13107000 9759700 12610000 7 7 1 7 7 7 7 7 7 7 7 7138600 11813000 148290 14258000 5682400 5605600 4747600 9130700 9816300 7459100 9781600 6647500 11032000 512550 14243000 5431300 6323500 5021500 9055500 9763400 7353800 9437000 5 5 2 5 5 5 5 5 5 5 5 8495000000 5589700000 2905300000 6791 1172 6323 36850;36851;36852;36853;36854;36855;36856;36857;36858;36859 44300;44301;44302;44303;44304;44305;44306;44307;44308;44309;44310;44311;44312;44313;44314 44307 15 GINSSNVENQLQATQAARK Unmodified 2028.0348 0.034828962 1172 P52292 KPNA2 Importin subunit alpha-1 yes yes 0 0 0 1 By MS/MS 7 0 1 1 41.768 42.229 3 8.4987E-78 12230 20211116_3435_TMUAki_TMT10x_P_F7 277.32 237.23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6792 1172 6324 36860 44315 44315 1 GINTLVTYDMVPEPK Oxidation (M) 1691.844 0.84402321 747 P20674 COX5A Cytochrome c oxidase subunit 5A, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 63.006 63.059 3 1.0642E-09 19151 20211116_3445_TMUAki_TMT10x_S_F6 127.36 108.07 38328000 64751000 783010 66439000 46723000 63501000 42706000 38090000 35211000 38079000 47823000 35692000 60426000 4011300 67615000 44746000 64301000 43297000 40010000 36597000 37191000 45742000 9 9 7 9 9 9 9 9 9 9 9 29374000 49257000 694600 49786000 36134000 53763000 33581000 29922000 27040000 29946000 36850000 27355000 45964000 3173600 50812000 34625000 53989000 33994000 31627000 28143000 29246000 35244000 7 7 6 7 7 7 7 7 7 7 7 8953700 15495000 88416 16652000 10589000 9737800 9125100 8167800 8171800 8133200 10973000 8337300 14462000 837760 16803000 10121000 10311000 9303000 8382700 8454500 7944700 10498000 2 2 1 2 2 2 2 2 2 2 2 3353400000 1903800000 1449700000 6793 747 6325 36861;36862;36863;36864;36865 44316;44317;44318;44319;44320;44321;44322;44323;44324;44325 44325 857 10 GINTLVTYDMVPEPK Unmodified 1675.8491 0.84910859 747 P20674 COX5A Cytochrome c oxidase subunit 5A, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 71.382 71.369 3 0.010622 22591 20211116_3445_TMUAki_TMT10x_S_F6 52.42 39.44 6293000 10634000 360950 10311000 7500900 7088200 7179100 4655300 4734200 5139100 6817100 5862100 9921800 875040 10494000 7206000 7365200 7223200 4870500 4997100 4999200 6511700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6293000 10634000 360950 10311000 7500900 7088200 7179100 4655300 4734200 5139100 6817100 5862100 9921800 875040 10494000 7206000 7365200 7223200 4870500 4997100 4999200 6511700 1 1 1 1 1 1 1 1 1 1 1 970030000 343070000 626960000 6794 747 6325 36866;36867;36868 44326;44327 44327 2 GIPAPEEER Unmodified 996.48762 0.4876242 431 O95433 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 yes yes 0 0 0 0 By matching By MS/MS 1 0 2 1 1 33.046 33.052 2 0.00078807 9173 20211116_3439_TMUAki_TMT10x_S_F1 111.95 98.041 246740 423850 0 424650 228910 221980 257040 256840 303450 231440 362500 229730 395500 19118 430130 220120 239420 260690 258620 308770 227090 347860 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 246740 423850 0 424650 228910 221980 257040 256840 303450 231440 362500 229730 395500 19118 430130 220120 239420 260690 258620 308770 227090 347860 1 1 0 1 1 1 1 1 1 1 1 18786000 9404100 9382400 6795 431 6326 36869;36870 44328 44328 1 GIPAPEEERTR Unmodified 1253.6364 0.6364137 431 O95433 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 yes yes 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 29.706 29.6 3 4.5553E-11 8905 20211116_3441_TMUAki_TMT10x_S_F3 160.88 104.15 677370 1104100 7542.7 1024500 1013900 908870 770850 606420 664050 574960 850720 630760 1029900 67902 1049000 966530 926230 791310 630890 686850 562830 814880 4 4 4 4 4 4 4 4 4 4 4 404630 623810 5340 572740 657350 659700 443940 334450 396130 334890 475310 376790 581890 42063 589200 625260 659390 459980 356470 407900 327060 456070 2 2 2 2 2 2 2 2 2 2 2 272740 480280 2202.7 451720 356560 249170 326920 271970 267910 240060 375410 253960 448050 25839 459820 341270 266840 331330 274420 278950 235770 358820 2 2 2 2 2 2 2 2 2 2 2 53837000 32298000 21539000 6796 431 6327 36871;36872;36873;36874 44329;44330;44331;44332 44332 4 GIPDDRDGLFDTIQR Unmodified 1716.8431 0.84311201 2386 Q93008;Q93008-1 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X no no 0 0 0 1 By MS/MS 3.5 0.5 1 1 2 54.765 54.385 3 0.062097 16647 20211116_3442_TMUAki_TMT10x_S_F4 41.938 24.138 3840100 6974500 184330 5796100 3407400 3698200 3401000 5751800 5503500 5572700 5203700 3576900 6503600 484100 5964800 3278200 3943000 3515200 5739000 5496300 5450000 5029100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3840100 6974500 184330 5796100 3407400 3698200 3401000 5751800 5503500 5572700 5203700 3576900 6503600 484100 5964800 3278200 3943000 3515200 5739000 5496300 5450000 5029100 1 1 1 1 1 1 1 1 1 1 1 170580000 0 170580000 6797 2386 6328 36875;36876 44333;44334 44334 2 GIPEFWLTVFK Unmodified 1335.7227 0.72270951 1240 P55209;P55209-2;P55209-3 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.09 0.793 3 4 4 6 5 81.626 81.606 2;3 1.3212E-18 27729 20211116_3442_TMUAki_TMT10x_S_F4 223.84 182.81 49967000 73526000 7028.4 82279000 39968000 39462000 54384000 12364000 11673000 19634000 40479000 46519000 68640000 3335500 82679000 38642000 42234000 53088000 14156000 14766000 18876000 38157000 10 10 1 10 10 10 10 10 10 10 10 24017000 33705000 0 37663000 17021000 23442000 23780000 6212600 5814400 9139300 19100000 22359000 31465000 1461400 37930000 16462000 24371000 23212000 7273700 7172700 8805400 18013000 4 4 0 4 4 4 4 4 4 4 4 25950000 39821000 7028.4 44615000 22947000 16020000 30604000 6151900 5858600 10494000 21380000 24160000 37175000 1874100 44749000 22180000 17863000 29876000 6882800 7593700 10071000 20144000 6 6 1 6 6 6 6 6 6 6 6 4665300000 2433700000 2231600000 6798 1240 6329 36877;36878;36879;36880;36881;36882;36883;36884;36885;36886;36887 44335;44336;44337;44338;44339;44340;44341;44342;44343;44344;44345 44344 11 GIPGFGNTGNISGAPVTYPSAGAQGVNNTASGNNSR Unmodified 3403.6141 0.61412171 2125 Q86XP3;Q86XP3-2 DDX42 ATP-dependent RNA helicase DDX42 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 63.453 63.191 4 2.8384E-17 19704 20211116_3440_TMUAki_TMT10x_S_F2 118.74 112.65 1387600 2694400 52794 2219100 1898900 2433200 1981700 2052300 2353800 2315700 2143500 1292400 2512400 171410 2300600 1826000 2457000 2017300 2113800 2370800 2250800 2074200 2 2 2 2 2 2 2 2 2 2 2 715590 1256500 14490 1019000 752060 1439500 952920 1007000 1164300 1157300 985840 666390 1171500 73342 1062600 727030 1430800 962630 1050200 1168900 1124100 956530 1 1 1 1 1 1 1 1 1 1 1 672060 1438000 38305 1200100 1146800 993670 1028700 1045300 1189500 1158300 1157600 626040 1340900 98066 1238000 1099000 1026200 1054600 1063600 1202000 1126600 1117700 1 1 1 1 1 1 1 1 1 1 1 1673400000 947220000 726190000 6799 2125 6330 36888;36889 44346;44347 44347 2 GIPGLDVEDDEEGGGGAP Unmodified 1682.7271 0.72713878 3177 Q9ULX6;Q9ULX6-2 AKAP8L A-kinase anchor protein 8-like yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 71.329 71.329 2 9.7679E-10 24713 20211116_3439_TMUAki_TMT10x_S_F1 107.24 93.086 1311700 2339100 33300 1967000 1511100 3033500 1910000 1881800 2097600 2017800 1737600 1221600 2181300 142570 2048900 1460900 2998700 1922400 1975500 2112900 1965100 1687400 1 1 1 1 1 1 1 1 1 1 1 1311700 2339100 33300 1967000 1511100 3033500 1910000 1881800 2097600 2017800 1737600 1221600 2181300 142570 2048900 1460900 2998700 1922400 1975500 2112900 1965100 1687400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 250030000 250030000 0 6800 3177 6331 36890;36891 44348;44349 44349 2 GIPHLVTHDAR Unmodified 1214.652 0.65200419 1362 P62701;Q8TD47 RPS4X;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2 no no 0 0 0 0 By MS/MS By MS/MS 5 0.667 2 5 2 6 3 29.177 29.204 2;3;4 9.0574E-15 7045 20211116_3433_TMUAki_TMT10x_P_F5 195.04 147.13 9755000 14898000 345350 15193000 12759000 13250000 11496000 9746800 9966900 9567500 12516000 9085200 13902000 1148900 15449000 12222000 13539000 11680000 10081000 10297000 9351500 11995000 7 7 6 7 7 7 7 7 7 7 7 4761600 7078500 288650 7649500 7421800 8472900 5359600 4446600 4707100 4740600 6068900 4435700 6607200 701040 7775700 7082000 8490400 5524100 4733000 4865500 4617800 5812300 5 5 5 5 5 5 5 5 5 5 5 4993300 7819200 56692 7543500 5337300 4777000 6136500 5300200 5259800 4827000 6447300 4649500 7295100 447810 7673700 5139600 5048900 6155600 5348300 5431500 4733800 6182800 2 2 1 2 2 2 2 2 2 2 2 1468700000 795230000 673500000 6801 1362 6332 36892;36893;36894;36895;36896;36897;36898;36899;36900 44350;44351;44352;44353;44354;44355;44356;44357 44353 8 GIPNMLLSEEETES Unmodified 1547.7025 0.70250394 3131 Q9UI30;Q9UI30-2 TRMT112 Multifunctional methyltransferase subunit TRM112-like protein yes no 0 0 0 0 By MS/MS 1 0 1 1 76.388 76.388 2 5.5319E-05 24800 20211116_3428_TMUAki_TMT10x_P_F1 99.653 88.502 3581400 6400800 63553 5780100 3429200 7261400 4423600 3878900 3672300 4286100 5037500 3335100 5970400 354020 5962700 3316900 7230100 4411800 4126700 3817200 4169200 4817300 2 2 2 2 2 2 2 2 2 2 2 3581400 6400800 63553 5780100 3429200 7261400 4423600 3878900 3672300 4286100 5037500 3335100 5970400 354020 5962700 3316900 7230100 4411800 4126700 3817200 4169200 4817300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 571290000 571290000 0 6802 3131 6333 36901 44358;44359 44359 2 GIPVVEHK Unmodified 877.50215 0.50215205 625;1500 Q02880;Q02880-2;P11388;P11388-2;P11388-3;P11388-4 TOP2B;TOP2A DNA topoisomerase 2-beta;DNA topoisomerase 2-alpha no no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.036 35.091 3 0.00096549 8788 20211116_3433_TMUAki_TMT10x_P_F5 107.66 82.666 1340200 2121900 32108 2204200 1895800 1945500 1652200 1282800 1352600 1254300 1683600 1248100 1980300 148810 2239000 1813600 1983000 1679400 1336900 1400900 1226200 1613800 2 2 2 2 2 2 2 2 2 2 2 853090 1318200 24015 1357200 1395400 1505100 1074400 805700 869820 794780 1071000 794490 1230100 100700 1384100 1331400 1508400 1100200 854150 900990 776680 1027000 1 1 1 1 1 1 1 1 1 1 1 487070 803760 8092.4 846970 500370 440440 577810 477110 482790 459520 612540 453580 750150 48110 854920 482210 474590 579100 482720 499920 449520 586880 1 1 1 1 1 1 1 1 1 1 1 120410000 90091000 30315000 6803 1500;625 6334 36902;36903;36904 44360;44361 44360 2 GIQEEMEALVK Unmodified 1245.6275 0.6274885 1852 Q16555;Q16555-2 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.36 0.881 2 4 4 1 7 4 69.648 69.459 2;3 1.1318E-15 23464 20211116_3429_TMUAki_TMT10x_P_F2 202.96 134.12 36435000 54913000 243860 70426000 32077000 34096000 36580000 15751000 13835000 18520000 33461000 33925000 51298000 2978900 70207000 30871000 36564000 36165000 17023000 15766000 17973000 31671000 7 7 4 7 7 7 7 7 7 7 7 24448000 36745000 243860 47927000 22424000 25852000 24242000 10282000 9200300 12078000 22014000 22765000 34329000 2157700 47773000 21557000 27348000 24029000 11294000 10473000 11722000 20840000 5 5 4 5 5 5 5 5 5 5 5 11988000 18168000 0 22499000 9653500 8244100 12338000 5468900 4634500 6442300 11447000 11161000 16969000 821210 22434000 9314600 9215500 12136000 5729600 5293600 6251800 10832000 2 2 0 2 2 2 2 2 2 2 2 3325600000 2266600000 1059000000 6804 1852 6335 36905;36906;36907;36908;36909;36910;36911;36912;36913;36914;36915 44362;44363;44364;44365;44366;44367;44368;44369;44370;44371;44372 44362 11 GIQEEMEALVK Oxidation (M) 1261.6224 0.62240312 1852 Q16555;Q16555-2 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 1 0 By MS/MS By MS/MS 3 0.632 1 3 1 2 3 47.627 47.461 2;3 0.0032736 16033 20211116_3441_TMUAki_TMT10x_S_F3 64.64 47.7 4592400 7196000 17684 9748100 5965900 5947100 4573300 5287900 6319300 4668300 6262600 4275700 6724200 366610 9707600 5683200 6278200 4765800 5391100 6350400 4584800 6043100 3 3 1 3 3 3 3 3 3 3 3 1753500 2484100 0 3756100 3784000 3865000 2376400 1912600 2402100 1676400 2236500 1632600 2322700 158250 3743600 3591800 3886800 2484900 2036000 2436700 1647000 2162600 1 1 0 1 1 1 1 1 1 1 1 2838900 4711900 17684 5992000 2181900 2082100 2196900 3375300 3917200 2991800 4026100 2643100 4401500 208360 5964000 2091300 2391400 2280900 3355100 3913700 2937800 3880500 2 2 1 2 2 2 2 2 2 2 2 466730000 213960000 252770000 6805 1852 6335 36916;36917;36918;36919;36920 44373;44374;44375 44375 2465 3 GIQGLAK Unmodified 685.41227 0.41227441 978 P39748 FEN1 Flap endonuclease 1 yes yes 0 0 0 0 By MS/MS 7 0 1 1 37.4 38.081 2 0.0063095 10777 20211116_3446_TMUAki_TMT10x_S_F7 104.11 32.116 430890 728180 53.295 737770 431300 372550 446530 432810 460560 414950 585380 401190 679500 34377 746510 413840 403410 452570 436480 472360 405990 560830 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 430890 728180 53.295 737770 431300 372550 446530 432810 460560 414950 585380 401190 679500 34377 746510 413840 403410 452570 436480 472360 405990 560830 2 2 1 2 2 2 2 2 2 2 2 11560000 0 11560000 6806 978 6336 36921 44376;44377 44376 2 GIRDDIEEEDDQEAYFR Unmodified 2098.908 0.90795669 2125 Q86XP3;Q86XP3-2 DDX42 ATP-dependent RNA helicase DDX42 yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 50.211 50.047 3 1.1783E-60 14006 20211116_3428_TMUAki_TMT10x_P_F1 289.1 273.68 9818400 16286000 0 16923000 12101000 14075000 10694000 11205000 11497000 11548000 12758000 9140900 15199000 418140 17177000 11560000 14450000 10946000 11548000 11706000 11265000 12268000 4 4 0 4 4 4 4 4 4 4 4 4721400 7316600 0 7334400 6316900 9448500 5926300 5242900 5423700 4926300 5609200 4395300 6827300 316990 7512600 6040800 9400600 6016200 5533400 5546200 4824300 5405200 2 2 0 2 2 2 2 2 2 2 2 5097000 8969600 0 9588800 5784400 4626500 4767700 5962300 6073000 6622200 7148900 4745600 8371900 101150 9664200 5518800 5049200 4929700 6014400 6159300 6440400 6863000 2 2 0 2 2 2 2 2 2 2 2 5573100000 3330000000 2243000000 6807 2125 6337 36922;36923;36924;36925 44378;44379;44380;44381 44378 4 GIREPVSVGTPSEGEGLGADGQEHKEDTFDVFR Unmodified 3514.6601 0.66006885 2151 Q8IX01;Q8IX01-4 SUGP2 SURP and G-patch domain-containing protein 2 yes no 0 0 0 2 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 55.922 55.703 5 7.7608E-16 19463 20211116_3441_TMUAki_TMT10x_S_F3 115.32 110.74 5549400 8923700 26104 9503300 7133700 10069000 6324000 7047900 6275500 6401800 7792900 5166500 8329000 404330 9662400 6814700 10155000 6455600 7299000 6440200 6278900 7470500 3 3 1 3 3 3 3 3 3 3 3 3952500 6329500 26104 6658200 5427000 8684800 4770400 5193900 4828300 4813300 5541800 3679900 5907400 311670 6799600 5184800 8644100 4874900 5445500 4934700 4716600 5323900 2 2 1 2 2 2 2 2 2 2 2 1597000 2594200 0 2845000 1706700 1384500 1553600 1854100 1447200 1588500 2251000 1486600 2421600 92654 2862800 1629900 1511100 1580600 1853500 1505500 1562300 2146600 1 1 0 1 1 1 1 1 1 1 1 3551000000 1263200000 2287800000 6808 2151 6338 36926;36927;36928;36929 44382;44383;44384 44384 3 GIRPAINVGLSVSR Unmodified 1437.8416 0.84159587 805 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 6 1.41 2 2 2 2 2 5 5 45.522 45.719 3 4.1828E-33 11705 20211116_3434_TMUAki_TMT10x_P_F6 223.28 203.25 26711000 43910000 165270 49049000 43236000 46644000 31200000 36447000 34527000 32614000 35804000 24869000 40992000 2356200 49639000 41148000 47437000 32380000 37456000 35025000 32011000 34499000 13 13 7 13 13 13 13 13 13 13 13 15604000 25323000 72761 28264000 31534000 36519000 21385000 21934000 20783000 18587000 20364000 14529000 23640000 1545900 28749000 29983000 36367000 22203000 22937000 21155000 18291000 19658000 8 8 4 8 8 8 8 8 8 8 8 11106000 18588000 92511 20785000 11702000 10124000 9815600 14512000 13744000 14028000 15440000 10340000 17353000 810320 20890000 11165000 11070000 10177000 14519000 13871000 13720000 14842000 5 5 3 5 5 5 5 5 5 5 5 5820100000 3086500000 2733600000 6809 805 6339 36930;36931;36932;36933;36934;36935;36936;36937;36938;36939 44385;44386;44387;44388;44389;44390;44391;44392;44393;44394;44395;44396;44397 44387 13 GIRPFPSEETTENDDDVYR Unmodified 2239.0029 0.0029197111 1185 P52735;P52735-3;P52735-2 VAV2 Guanine nucleotide exchange factor VAV2 yes no 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 44.837 44.707 3 2.5896E-71 13515 20211116_3429_TMUAki_TMT10x_P_F2 292.6 278.13 1936000 3126800 25375 3683500 4782500 5455100 3592200 3454300 3328200 2975100 3107600 1802800 2919700 224020 3744900 4557300 5403000 3697800 3598700 3389600 2925400 3004600 3 3 3 3 3 3 3 3 3 3 3 1936000 3126800 25375 3683500 4782500 5455100 3592200 3454300 3328200 2975100 3107600 1802800 2919700 224020 3744900 4557300 5403000 3697800 3598700 3389600 2925400 3004600 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 375380000 375380000 0 6810 1185 6340 36940;36941 44398;44399;44400 44398 3 GIRPGLTTVLAR Unmodified 1252.7616 0.76155464 2970 Q9NVH1;Q9NVH1-3;Q9NVH1-2 DNAJC11 DnaJ homolog subfamily C member 11 yes no 0 0 0 1 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 41.53 41.642 3 8.0441E-08 11111 20211116_3431_TMUAki_TMT10x_P_F4 137.31 77.146 7364000 12983000 124390 13276000 17146000 17128000 12387000 9735500 8630300 8836900 11390000 6857500 12116000 863450 13581000 16328000 17045000 12697000 10245000 9042100 8667600 10902000 4 4 4 4 4 4 4 4 4 4 4 5408900 9346600 97983 9605800 14653000 15570000 10776000 7294600 6402900 6516100 8333600 5037000 8722400 669220 9870400 13958000 15308000 10998000 7811000 6773700 6396100 7979300 3 3 3 3 3 3 3 3 3 3 3 1955100 3636600 26403 3670400 2493100 1558000 1610400 2440800 2227400 2320700 3056400 1820500 3393500 194230 3710400 2369900 1737300 1698800 2433500 2268400 2271500 2922700 1 1 1 1 1 1 1 1 1 1 1 514180000 284180000 230000000 6811 2970 6341 36942;36943;36944;36945;36946 44401;44402;44403;44404;44405 44402 5 GISAFPESDNLFK Unmodified 1423.6983 0.69834526 108 O00762;O00762-2;O00762-4 UBE2C Ubiquitin-conjugating enzyme E2 C yes no 0 0 0 0 By MS/MS By MS/MS 5.64 0.881 1 4 4 2 5 6 70.139 70.196 2;3 1.4191E-29 22148 20211116_3445_TMUAki_TMT10x_S_F6 244.27 181.19 67573000 107270000 220320 116790000 53383000 57916000 58874000 30755000 28057000 31765000 59570000 62916000 100130000 5270100 117600000 51316000 62022000 58478000 32671000 31010000 30982000 56489000 9 9 5 9 9 9 9 9 9 9 9 13802000 21610000 0 23219000 10600000 14875000 11327000 6178000 6138600 6704000 12310000 12850000 20171000 1021200 23449000 10177000 15473000 11291000 6736100 6691000 6525800 11684000 2 2 0 2 2 2 2 2 2 2 2 53772000 85665000 220320 93575000 42783000 43041000 47547000 24577000 21919000 25061000 47260000 50066000 79964000 4248800 94147000 41139000 46549000 47187000 25935000 24319000 24456000 44806000 7 7 5 7 7 7 7 7 7 7 7 6405100000 2120800000 4284300000 6812 108 6342 36947;36948;36949;36950;36951;36952;36953;36954;36955;36956;36957 44406;44407;44408;44409;44410;44411;44412;44413;44414;44415;44416 44413 11 GISCMNTTLSESPFK Oxidation (M) 1686.7593 0.75930731 1777 Q15181 PPA1 Inorganic pyrophosphatase yes yes 0 0 1 0 By MS/MS By MS/MS 6.2 0.748 1 2 2 2 3 53.377 53.699 3 1.1717E-09 16807 20211116_3435_TMUAki_TMT10x_P_F7 125.97 113.83 19484000 32589000 375980 35762000 24050000 29916000 19595000 32558000 33794000 27614000 30094000 18144000 30421000 1957500 36172000 22966000 30897000 20548000 32821000 33627000 27173000 29145000 6 6 4 6 6 6 6 6 6 6 6 7067700 11173000 208420 12091000 13186000 18795000 9791900 11431000 11554000 9434900 10166000 6581800 10429000 814140 12370000 12567000 18568000 10164000 11934000 11628000 9296900 9850200 2 2 1 2 2 2 2 2 2 2 2 12417000 21416000 167560 23672000 10864000 11121000 9802800 21127000 22240000 18179000 19927000 11562000 19992000 1143400 23802000 10399000 12329000 10384000 20887000 21999000 17876000 19295000 4 4 3 4 4 4 4 4 4 4 4 3124600000 1599000000 1525500000 6813 1777 6343 36958;36959;36960;36961;36962 44417;44418;44419;44420;44421;44422 44418 2379 6 GISCMNTTLSESPFK Unmodified 1670.7644 0.76439269 1777 Q15181 PPA1 Inorganic pyrophosphatase yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 62.182 62.523 3 6.9868E-05 18666 20211116_3447_TMUAki_TMT10x_S_F8 85.909 73.744 32245000 53928000 256010 55056000 39914000 43391000 34248000 30912000 27116000 29045000 36656000 30025000 50324000 2983300 55912000 38142000 44643000 34814000 32003000 28237000 28444000 35066000 7 7 5 7 7 7 7 7 7 7 7 17975000 29371000 57794 30690000 22913000 28152000 19930000 14196000 12342000 13552000 18530000 16737000 27411000 1613300 31178000 21898000 28522000 20137000 15118000 13107000 13262000 17683000 3 3 3 3 3 3 3 3 3 3 3 14270000 24557000 198210 24366000 17001000 15239000 14318000 16716000 14775000 15493000 18127000 13288000 22913000 1370000 24734000 16244000 16120000 14678000 16884000 15129000 15181000 17382000 4 4 2 4 4 4 4 4 4 4 4 2524800000 1325500000 1199200000 6814 1777 6343 36963;36964;36965;36966 44423;44424;44425;44426;44427;44428;44429 44428 7 GISCMNTTLSESPFKCDPDAAR Oxidation (M) 2472.0719 0.071944029 1777 Q15181 PPA1 Inorganic pyrophosphatase yes yes 0 0 1 1 By MS/MS By MS/MS 6 0 2 1 1 49.139 49.263 3 5.3758E-12 13518 20211116_3445_TMUAki_TMT10x_S_F6 107.92 103.97 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6815 1777 6344 36967;36968 44430;44431 44431 2379 2 GISDLAQHYLMR Unmodified 1402.7027 0.70271913 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 2 1 58.494 58.578 3 4.1648E-15 17545 20211116_3428_TMUAki_TMT10x_P_F1 151.13 127.89 4001200 6635000 40264 6986300 5924200 6430800 4325400 4770800 3974200 3881400 4774100 3725900 6192500 396190 7094100 5642700 6548200 4460200 4907800 4086800 3827400 4580600 2 2 2 2 2 2 2 2 2 2 2 2034500 3321400 27244 3563300 3300800 4748200 2751600 2756100 2157700 2084800 2334900 1894500 3100100 211800 3635800 3152800 4719300 2801400 2882700 2227400 2063800 2246900 1 1 1 1 1 1 1 1 1 1 1 1966700 3313600 13020 3423000 2623500 1682600 1573900 2014700 1816500 1796600 2439200 1831300 3092300 184390 3458200 2489900 1828900 1658800 2025100 1859500 1763700 2333700 1 1 1 1 1 1 1 1 1 1 1 1375100000 837230000 537870000 6816 1094 6345 36969;36970;36971 44432;44433;44434 44432 3 GISDLAQHYLMR Oxidation (M) 1418.6976 0.69763375 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 1 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 53.562 53.829 3 7.4077E-07 15154 20211116_3447_TMUAki_TMT10x_S_F8 120.03 103.01 7875500 13845000 68907 13916000 11446000 14156000 8208400 12491000 12521000 10525000 11177000 7333000 12919000 723150 14196000 10895000 14369000 8628900 12725000 12502000 10360000 10823000 4 4 2 4 4 4 4 4 4 4 4 3906200 6572700 51078 6665600 7101400 10341000 5059200 5918800 5614000 4704000 5001300 3637400 6133400 407460 6848400 6760400 10208000 5255700 6204600 5665300 4644300 4843500 2 2 1 2 2 2 2 2 2 2 2 3969200 7272100 17829 7250800 4344500 3815300 3149200 6572000 6907400 5820600 6175300 3695600 6785600 315690 7347100 4134500 4160700 3373200 6520400 6836700 5715700 5979800 2 2 1 2 2 2 2 2 2 2 2 5265300000 2925900000 2339400000 6817 1094 6345 36972;36973;36974;36975;36976 44435;44436;44437;44438 44438 1442 4 GISEETTTGVHNLYK Unmodified 1647.8104 0.8104149 786 P23526;P23526-2 AHCY Adenosylhomocysteinase yes no 0 0 0 0 By MS/MS By MS/MS 4.4 1.2 1 1 3 3 2 6 4 41.88 41.889 3;4 5.6472E-38 11142 20211116_3431_TMUAki_TMT10x_P_F4 246.86 220.23 22670000 32922000 137540 52342000 53627000 47650000 25520000 29831000 35534000 22422000 32560000 21108000 30792000 2305800 51956000 50713000 48431000 27666000 31007000 35606000 22204000 31501000 10 10 4 10 10 10 10 10 10 10 10 14455000 20501000 113030 32468000 49108000 43074000 21283000 18746000 22214000 14146000 19814000 13460000 19174000 1705800 32436000 46389000 42680000 23072000 20149000 22473000 14005000 19188000 6 6 2 6 6 6 6 6 6 6 6 8214300 12421000 24513 19874000 4519600 4575800 4237200 11085000 13320000 8276100 12746000 7648100 11618000 599920 19520000 4324600 5751400 4594000 10858000 13133000 8198600 12313000 4 4 2 4 4 4 4 4 4 4 4 5857700000 4353900000 1503800000 6818 786 6346 36977;36978;36979;36980;36981;36982;36983;36984;36985;36986 44439;44440;44441;44442;44443;44444;44445;44446;44447;44448;44449 44439 11 GISHVIVDEIHER Unmodified 1502.7841 0.78414057 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 By MS/MS By MS/MS 2.82 1.03 1 4 2 4 4 7 40.114 40.052 3;4 1.4276E-19 10401 20211116_3431_TMUAki_TMT10x_P_F4 192.15 175.89 27893000 41183000 164050 44744000 37280000 34828000 30823000 26379000 23643000 24897000 33323000 25968000 38441000 2080100 45246000 35560000 35902000 31381000 27203000 24710000 24376000 31846000 17 17 8 17 17 17 17 17 17 17 17 11981000 17480000 24228 18949000 22062000 21606000 13266000 12824000 11863000 11189000 13787000 11154000 16316000 933870 19267000 20920000 21649000 13873000 13433000 12198000 10995000 13240000 6 6 2 6 6 6 6 6 6 6 6 15912000 23703000 139830 25795000 15218000 13222000 17557000 13556000 11780000 13708000 19536000 14815000 22125000 1146200 25979000 14640000 14252000 17508000 13770000 12512000 13381000 18606000 11 11 6 11 11 11 11 11 11 11 11 2881000000 1828000000 1052900000 6819 1546 6347 36987;36988;36989;36990;36991;36992;36993;36994;36995;36996;36997 44450;44451;44452;44453;44454;44455;44456;44457;44458;44459;44460;44461;44462;44463;44464;44465;44466 44454 17 GISISSK Unmodified 690.3912 0.39120462 2177 Q8N0X7 SPG20 Spartin yes yes 0 0 0 0 By MS/MS 7 0 1 1 36.866 37.304 2 0.088313 10237 20211116_3435_TMUAki_TMT10x_P_F7 57.047 9.1988 1293500 2023400 0 2006500 1789100 2226600 1435600 979250 1096700 1019400 1453600 1204400 1888000 113040 2051400 1706500 2226700 1464100 1059800 1143200 993900 1391200 2 2 0 2 2 2 2 2 2 2 2 1293500 2023400 0 2006500 1789100 2226600 1435600 979250 1096700 1019400 1453600 1204400 1888000 113040 2051400 1706500 2226700 1464100 1059800 1143200 993900 1391200 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37947000 37947000 0 6820 2177 6348 36998 44467;44468 44467 2 GISLNPEQWSQLK Unmodified 1498.778 0.77799256 1215 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes yes 0 0 0 0 By MS/MS By MS/MS 5.38 2.98 4 1 4 4 7 6 72.954 72.983 2;3 1.2351E-43 23446 20211116_3436_TMUAki_TMT10x_P_F8 278.93 194.98 129210000 217140000 1674900 218840000 158580000 178910000 174270000 86337000 74700000 96798000 149180000 120310000 202620000 12254000 222530000 152520000 182650000 172870000 92767000 82994000 94107000 141600000 22 22 14 22 22 22 22 22 22 22 22 77967000 127210000 834610 129060000 94077000 131850000 113930000 49268000 42406000 56304000 87977000 72599000 118710000 7195500 131580000 90737000 132300000 112310000 54471000 47888000 54700000 83457000 12 12 9 12 12 12 12 12 12 12 12 51239000 89930000 840250 89775000 64504000 47058000 60346000 37070000 32294000 40494000 61204000 47714000 83913000 5058900 90958000 61785000 50350000 60560000 38296000 35107000 39407000 58147000 10 10 5 10 10 10 10 10 10 10 10 17022000000 10222000000 6800000000 6821 1215 6349 36999;37000;37001;37002;37003;37004;37005;37006;37007;37008;37009;37010;37011 44469;44470;44471;44472;44473;44474;44475;44476;44477;44478;44479;44480;44481;44482;44483;44484;44485;44486;44487;44488;44489;44490 44478 22 GISQEQMQEFR Oxidation (M) 1367.614 0.6139637 235 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 1 0 By MS/MS By MS/MS 2.6 0.49 2 3 4 1 34.016 33.87 2;3 2.2823E-05 9096 20211116_3429_TMUAki_TMT10x_P_F2 113.74 81.98 863400 1401400 10104 1926500 2332000 1650400 1042300 1076300 1285300 891940 1444000 803960 1309600 94923 1924200 2204000 1685500 1132200 1117700 1302600 878710 1388100 4 4 2 4 4 4 4 4 4 4 4 600630 925610 8870.2 1262500 2096500 1467200 842150 728550 856370 605220 968030 559280 864950 72369 1267200 1979000 1465500 920250 774330 874550 596170 930370 3 3 1 3 3 3 3 3 3 3 3 262770 475790 1233.6 664020 235550 183210 200190 347710 428940 286720 475970 244680 444660 22554 656930 225040 219990 211990 343400 428030 282540 457690 1 1 1 1 1 1 1 1 1 1 1 115560000 83066000 32490000 6822 235 6350 37012;37013;37014;37015;37016 44491;44492;44493;44494 44492 188 4 GISQEQMQEFR Unmodified 1351.619 0.61904908 235 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 By MS/MS By matching 3 0.816 1 1 1 2 1 42.859 42.99 2 3.0201E-23 13044 20211116_3430_TMUAki_TMT10x_P_F3 243.82 163.6 436780 651610 368.67 1007900 1392000 897530 710840 321480 322380 331380 572660 406690 609350 49934 1001400 1317600 908210 744620 356230 353850 323240 544680 1 1 1 1 1 1 1 1 1 1 1 436780 651610 368.67 1007900 1392000 897530 710840 321480 322380 331380 572660 406690 609350 49934 1001400 1317600 908210 744620 356230 353850 323240 544680 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 88727000 47676000 41051000 6823 235 6350 37017;37018;37019 44495;44496 44496 2 GISVHISNAEPK Unmodified 1250.6619 0.66190017 1600 Q13148;Q13148-4 TARDBP TAR DNA-binding protein 43 yes no 0 0 0 0 By MS/MS 3 0 1 1 38.191 37.933 3 0.00068116 12214 20211116_3441_TMUAki_TMT10x_S_F3 78.964 58.187 490650 812240 5958.8 909130 515690 443880 452710 631920 739350 583230 724760 456890 758270 46582 913670 493240 485120 471370 631550 739100 571620 699600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 490650 812240 5958.8 909130 515690 443880 452710 631920 739350 583230 724760 456890 758270 46582 913670 493240 485120 471370 631550 739100 571620 699600 1 1 1 1 1 1 1 1 1 1 1 14974000 0 14974000 6824 1600 6351 37020 44497 44497 1 GITAFIVEK Unmodified 976.55933 0.55933258 816 P26440;P26440-2 IVD Isovaleryl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS 7 0 1 1 64.491 64.923 2 0.00032044 21928 20211116_3446_TMUAki_TMT10x_S_F7 93.178 59.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6825 816 6352 37021 44498 44498 1 GITEQQKEGLEIVK Unmodified 1570.8566 0.85663681 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 49.469 49.632 3 4.4538E-19 14686 20211116_3442_TMUAki_TMT10x_S_F4 169.92 118.32 24908000 44784000 291190 37729000 82601000 90126000 43829000 92682000 91165000 67769000 61799000 23194000 41761000 3144500 39772000 78245000 88640000 47950000 93358000 89631000 67213000 60524000 7 7 7 7 7 7 7 7 7 7 7 16149000 28769000 206550 24530000 71116000 77805000 35783000 57451000 56577000 42752000 38967000 15038000 26828000 2301200 26121000 67314000 75519000 38788000 59000000 56022000 42359000 38136000 4 4 4 4 4 4 4 4 4 4 4 8759000 16015000 84644 13199000 11485000 12321000 8045700 35230000 34588000 25017000 22831000 8156200 14933000 843250 13651000 10931000 13121000 9162600 34358000 33609000 24854000 22389000 3 3 3 3 3 3 3 3 3 3 3 1939500000 1328800000 610670000 6826 648 6353 37022;37023;37024;37025 44499;44500;44501;44502;44503;44504;44505 44503 7 GITFDSGGISIK Unmodified 1193.6292 0.62920306 846 P28838;P28838-2 LAP3 Cytosol aminopeptidase yes no 0 0 0 0 By MS/MS 7 0 1 1 64.083 64.726 2 0.010387 21278 20211116_3435_TMUAki_TMT10x_P_F7 62.463 31.805 4271300 7255600 0 6491000 4319600 8523000 4914400 5736800 5603400 6008000 5045500 3976900 6767400 349960 6706300 4156500 8494700 4975100 5981500 5650500 5856600 4884400 1 1 0 1 1 1 1 1 1 1 1 4271300 7255600 0 6491000 4319600 8523000 4914400 5736800 5603400 6008000 5045500 3976900 6767400 349960 6706300 4156500 8494700 4975100 5981500 5650500 5856600 4884400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 366180000 366180000 0 6827 846 6354 37026 44506 44506 1 GITGVDLFGTTDAVVK Unmodified 1591.8457 0.84573777 1207 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 By MS/MS By MS/MS 5.82 0.936 1 3 4 3 6 5 76.18 76.2 2;3 6.0664E-69 24211 20211116_3434_TMUAki_TMT10x_P_F6 297.88 255.14 39110000 64197000 288860 58641000 46585000 63949000 47555000 47170000 45626000 46449000 51678000 36416000 59882000 3479100 60295000 44700000 64443000 48126000 48785000 46715000 45394000 49664000 12 12 8 12 12 12 12 12 12 12 12 23718000 37140000 237640 34387000 24270000 46573000 28531000 27993000 26781000 27437000 29903000 22085000 34645000 2100500 35457000 23386000 46277000 28663000 29382000 27433000 26820000 28750000 7 7 5 7 7 7 7 7 7 7 7 15391000 27057000 51218 24254000 22315000 17376000 19024000 19177000 18845000 19012000 21775000 14331000 25237000 1378600 24838000 21314000 18166000 19463000 19402000 19283000 18575000 20915000 5 5 3 5 5 5 5 5 5 5 5 6110900000 3073000000 3037900000 6828 1207 6355 37027;37028;37029;37030;37031;37032;37033;37034;37035;37036;37037 44507;44508;44509;44510;44511;44512;44513;44514;44515;44516;44517;44518 44510 12 GITHIGYTDLPSR Unmodified 1428.7361 0.73612775 1630 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 6 0.707 1 2 1 2 2 41.505 41.534 3 1.0201E-13 10274 20211116_3445_TMUAki_TMT10x_S_F6 144.2 119.27 3206000 5170900 41721 6343500 7030600 6955000 4139800 4570300 4706700 3833900 4667400 2985300 4829300 347180 6397800 6670400 6994000 4367900 4745100 4762000 3774700 4503700 3 3 2 3 3 3 3 3 3 3 3 3206000 5170900 41721 6343500 7030600 6955000 4139800 4570300 4706700 3833900 4667400 2985300 4829300 347180 6397800 6670400 6994000 4367900 4745100 4762000 3774700 4503700 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 697830000 697830000 0 6829 1630 6356 37038;37039;37040;37041 44519;44520;44521;44522;44523;44524 44524 6 GITIETGGFLSR Unmodified 1249.6667 0.6666512 3384 yes yes 0 0 0 0 By MS/MS By MS/MS 6.11 0.737 2 4 3 5 4 54.613 54.839 2 0.0022652 15781 20211116_3445_TMUAki_TMT10x_S_F6 77.662 40.598 + 74235000 118600000 1448700 134670000 83195000 101270000 75879000 70123000 67883000 71919000 89369000 69131000 110720000 7630300 135750000 79675000 104520000 77103000 72921000 70172000 70166000 85546000 10 10 10 10 10 10 10 10 10 10 10 30622000 50671000 602040 57047000 45537000 66178000 38947000 30682000 31406000 30912000 35587000 28516000 47306000 3308700 57883000 43534000 66057000 39617000 32993000 32429000 30181000 34200000 4 4 4 4 4 4 4 4 4 4 4 43613000 67924000 846680 77627000 37658000 35089000 36932000 39441000 36477000 41007000 53782000 40615000 63417000 4321500 77871000 36141000 38468000 37486000 39928000 37743000 39985000 51346000 6 6 6 6 6 6 6 6 6 6 6 5181400000 2472200000 2709200000 6830 3384 6357 37042;37043;37044;37045;37046;37047;37048;37049;37050 44525;44526;44527;44528;44529;44530 44529 6 GITINAAHVEYSTAAR Unmodified 1672.8533 0.85328277 1097 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5.18 2.17 2 3 3 2 1 4 7 38.651 38.779 3 3.1756E-31 10047 20211116_3444_TMUAki_TMT10x_S_F5 183.23 167.43 18539000 28283000 179500 33231000 25554000 26662000 17976000 22332000 23101000 19139000 24332000 17262000 26410000 1508300 33453000 24314000 27469000 18789000 22828000 23321000 18823000 23434000 14 14 8 14 14 14 14 14 14 14 14 11378000 17257000 29176 20152000 19651000 20366000 12412000 13296000 13792000 11315000 14713000 10593000 16113000 803490 20357000 18654000 20575000 13012000 13816000 14003000 11133000 14165000 7 7 2 7 7 7 7 7 7 7 7 7161200 11026000 150320 13079000 5903300 6296200 5563900 9035700 9309300 7823700 9618500 6668800 10296000 704800 13097000 5660200 6894100 5777400 9012300 9317700 7690900 9269000 7 7 6 7 7 7 7 7 7 7 7 5622000000 3946700000 1675300000 6831 1097 6358 37051;37052;37053;37054;37055;37056;37057;37058;37059;37060;37061 44531;44532;44533;44534;44535;44536;44537;44538;44539;44540;44541;44542;44543;44544;44545;44546;44547;44548 44542 18 GITNLCVIGGDGSLTGADTFR Unmodified 2123.0317 0.031717419 552 P08237;P08237-3;P08237-2 PFKM ATP-dependent 6-phosphofructokinase, muscle type yes no 0 0 0 0 By MS/MS By MS/MS 6.4 0.49 3 2 2 3 72.973 72.983 2;3 5.6202E-99 22922 20211116_3434_TMUAki_TMT10x_P_F6 289.87 261.07 5297200 9249600 16147 8047600 6386400 8936100 7171700 5902000 4761000 5789700 7270600 4932300 8626300 467480 8308100 6144200 8980500 7158800 6150500 5038000 5659200 6936000 3 3 2 3 3 3 3 3 3 3 3 2670500 4292000 13883 3556800 2445200 5566500 3825000 2962400 2315600 2736800 3515100 2486600 4002100 231180 3710500 2380100 5488300 3761000 3136600 2464300 2682200 3353700 1 1 1 1 1 1 1 1 1 1 1 2626700 4957600 2264.1 4490800 3941300 3369600 3346600 2939700 2445400 3052900 3755500 2445700 4624200 236300 4597600 3764100 3492200 3397800 3013900 2573700 2977000 3582300 2 2 1 2 2 2 2 2 2 2 2 2052800000 838330000 1214500000 6832 552 6359 37062;37063;37064;37065;37066 44549;44550;44551;44552;44553 44550 5 GITNLCVIGGDGSLTGANLFR Unmodified 2134.0841 0.08408734 1487 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 By MS/MS By MS/MS 2 0 3 2 1 78.2 78.156 2;3 2.3577E-67 25737 20211116_3440_TMUAki_TMT10x_S_F2 241.98 178.91 6108300 10562000 137320 8839200 5933400 10268000 7590200 5436200 4206200 5944700 7419100 5687800 9848700 545760 9160500 5733600 10264000 7507700 5786300 4541200 5784900 7057500 3 3 1 3 3 3 3 3 3 3 3 4189900 7376500 137320 5981500 4014100 8026600 5020000 3834900 2902700 4086400 5241100 3902100 6877800 457030 6231200 3881500 7956700 4973900 4118100 3128600 3980700 4983500 2 2 1 2 2 2 2 2 2 2 2 1918400 3185100 0 2857800 1919300 2241800 2570100 1601300 1303500 1858200 2178100 1785700 2970900 88734 2929300 1852100 2307400 2533800 1668100 1412600 1804300 2074000 1 1 0 1 1 1 1 1 1 1 1 3417900000 2612500000 805390000 6833 1487 6360 37067;37068;37069 44554;44555;44556 44556 3 GITNLCVIGGDGSLTGANLFRK Unmodified 2262.1791 0.17905036 1487 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 73.642 73.558 3 6.0404E-35 24456 20211116_3442_TMUAki_TMT10x_S_F4 180.03 165.62 26839000 46721000 34649 36982000 29074000 38616000 25914000 37625000 25685000 31266000 32063000 24989000 43559000 2066500 38053000 27787000 39070000 26405000 38115000 26367000 30798000 30732000 6 6 1 5 5 5 5 6 6 6 6 9127200 14918000 34649 14926000 6911000 20561000 7935300 12666000 7849600 9842000 9790500 8498200 13920000 712770 15311000 6651500 20421000 7954100 13192000 8058300 9728600 9384400 3 3 1 3 3 3 2 3 3 3 3 17712000 31804000 0 22056000 22163000 18055000 17979000 24960000 17836000 21424000 22272000 16490000 29640000 1353700 22742000 21135000 18648000 18451000 24923000 18309000 21069000 21348000 3 3 0 2 2 2 3 3 3 3 3 3945800000 2177200000 1768600000 6834 1487 6361 37070;37071;37072 44557;44558;44559;44560;44561;44562 44562 6 GIVDCIVR Unmodified 930.49569 0.49568646 639 P12236 SLC25A6 ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed yes yes 0 0 0 0 By MS/MS 5 0 1 1 47.017 47.176 2 0.019436 13534 20211116_3433_TMUAki_TMT10x_P_F5 72.875 18.984 2933200 4782300 0 5408100 7164000 7328900 4015300 3575000 3647700 3290700 3736400 2730900 4464700 277860 5501600 6788400 7263400 4226100 3815700 3730100 3225600 3601600 1 1 0 1 1 1 1 1 1 1 1 2933200 4782300 0 5408100 7164000 7328900 4015300 3575000 3647700 3290700 3736400 2730900 4464700 277860 5501600 6788400 7263400 4226100 3815700 3730100 3225600 3601600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 221200000 221200000 0 6835 639 6362 37073 44563 44563 1 GIVDQSQQAYQEAFEISK Unmodified 2039.98 0.97999942 1395 P63104;P63104-2 YWHAZ 14-3-3 protein zeta/delta yes no 0 0 0 0 By MS/MS By MS/MS 4.7 1.1 2 2 3 3 5 5 70.526 70.461 2;3 1.4562E-79 21899 20211116_3444_TMUAki_TMT10x_S_F5 309.26 284.97 75890000 128430000 1265000 125730000 82866000 109860000 97640000 68188000 68442000 76739000 92261000 70669000 119830000 6796200 128220000 79894000 111960000 97364000 71688000 71751000 74595000 88264000 16 16 11 16 16 16 16 16 16 16 16 41807000 70355000 700270 69250000 43800000 71411000 51359000 37967000 36320000 41020000 48894000 38931000 65645000 3436300 70756000 42223000 71864000 51235000 40382000 38054000 39936000 46777000 9 9 5 9 9 9 9 9 9 9 9 34082000 58076000 564760 56478000 39067000 38446000 46281000 30221000 32122000 35720000 43367000 31738000 54185000 3360000 57461000 37671000 40094000 46130000 31306000 33697000 34659000 41487000 7 7 6 7 7 7 7 7 7 7 7 15224000000 8787700000 6436400000 6836 1395 6363 37074;37075;37076;37077;37078;37079;37080;37081;37082;37083 44564;44565;44566;44567;44568;44569;44570;44571;44572;44573;44574;44575;44576;44577;44578;44579 44575 16 GIVDQSQQAYQEAFEISKK Unmodified 2168.075 0.074962442 1395 P63104;P63104-2 YWHAZ 14-3-3 protein zeta/delta yes no 0 0 0 1 By MS/MS By MS/MS 6.44 1.06 4 4 5 3 7 9 65.631 65.783 2;3;4 3.5374E-68 22327 20211116_3446_TMUAki_TMT10x_S_F7 242.92 227.44 255050000 434220000 1809000 417230000 317610000 342170000 298970000 274820000 279320000 287700000 324900000 237470000 405110000 21850000 425720000 304060000 351700000 303620000 283210000 286640000 280450000 312010000 31 31 17 31 31 31 31 31 31 31 31 86070000 135110000 257200 133710000 95991000 164180000 106160000 92687000 94028000 91059000 100890000 80136000 126060000 6839100 136960000 92268000 163770000 106780000 97797000 96432000 89000000 97114000 13 13 6 13 13 13 13 13 13 13 13 168980000 299110000 1551800 283520000 221620000 178000000 192810000 182140000 185290000 196640000 224010000 157340000 279040000 15011000 288760000 211790000 187940000 196850000 185410000 190200000 191450000 214900000 18 18 11 18 18 18 18 18 18 18 18 52401000000 26618000000 25783000000 6837 1395 6364 37084;37085;37086;37087;37088;37089;37090;37091;37092;37093;37094;37095;37096;37097;37098;37099 44580;44581;44582;44583;44584;44585;44586;44587;44588;44589;44590;44591;44592;44593;44594;44595;44596;44597;44598;44599;44600;44601;44602;44603;44604;44605;44606;44607;44608;44609;44610;44611 44607 32 GIVEESVTGVHR Unmodified 1281.6677 0.66771383 253 Q96HN2;O43865;Q96HN2-2;O43865-2;Q96HN2-4;Q96HN2-3 AHCYL2;AHCYL1 Putative adenosylhomocysteinase 3;Putative adenosylhomocysteinase 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 35.153 35.178 3 1.5178E-28 11011 20211116_3441_TMUAki_TMT10x_S_F3 231.05 190.98 1205400 1864700 18126 2023500 1901400 2060800 1457100 1054400 1079300 1053800 1533700 1122500 1740600 126580 2053700 1813100 2074500 1489500 1122800 1130600 1029200 1465400 1 1 1 1 1 1 1 1 1 1 1 1205400 1864700 18126 2023500 1901400 2060800 1457100 1054400 1079300 1053800 1533700 1122500 1740600 126580 2053700 1813100 2074500 1489500 1122800 1130600 1029200 1465400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 145280000 145280000 0 6838 253 6365 37100;37101 44612;44613 44613 2 GIVEFASK Unmodified 849.45962 0.45961853 777 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 50.991 51.16 2 0.002052 14289 20211116_3445_TMUAki_TMT10x_S_F6 114.28 62.494 5508200 8851400 0 11045000 4827200 4961700 5841600 6263700 5988800 5341900 7222700 5128400 8267500 406210 11022000 4651400 5459200 5876900 6275200 6129900 5255200 6929300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5508200 8851400 0 11045000 4827200 4961700 5841600 6263700 5988800 5341900 7222700 5128400 8267500 406210 11022000 4651400 5459200 5876900 6275200 6129900 5255200 6929300 1 1 0 1 1 1 1 1 1 1 1 406760000 233140000 173620000 6839 777 6366 37102;37103;37104 44614;44615 44615 2 GIVEFASKPAAR Unmodified 1244.6877 0.68772099 777 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 1 By MS/MS By MS/MS 4.67 2.91 2 2 1 2 2 4 5 42.989 43.095 3 9.9344E-16 11247 20211116_3436_TMUAki_TMT10x_P_F8 195.09 173.74 46900000 71403000 374190 76687000 90434000 82308000 46832000 67421000 70618000 57638000 66814000 43668000 66646000 4487200 77945000 85615000 83169000 50520000 69008000 70666000 56695000 64571000 14 14 9 14 14 14 14 14 14 14 14 29443000 44130000 197240 46954000 72442000 66652000 30896000 41851000 44256000 35530000 40664000 27414000 41188000 3053000 47996000 68417000 66128000 33925000 43613000 44311000 34961000 39338000 6 6 4 6 6 6 6 6 6 6 6 17457000 27273000 176950 29734000 17992000 15656000 15936000 25571000 26362000 22108000 26150000 16254000 25458000 1434200 29949000 17198000 17041000 16594000 25395000 26355000 21734000 25233000 8 8 5 8 8 8 8 8 8 8 8 8915100000 5302500000 3612600000 6840 777 6367 37105;37106;37107;37108;37109;37110;37111;37112;37113 44616;44617;44618;44619;44620;44621;44622;44623;44624;44625;44626;44627;44628;44629 44620 14 GIVEFSGK Unmodified 835.44397 0.44396847 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 0 By MS/MS 6 0 1 1 48.339 48.496 2 0.1032 13194 20211116_3445_TMUAki_TMT10x_S_F6 47.599 10.223 6228000 10931000 0 10967000 6379100 7371600 5051600 9731800 11744000 9770000 9616000 5798800 10200000 499630 11131000 6081900 7784500 5400600 9776600 11579000 9540300 9342100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6228000 10931000 0 10967000 6379100 7371600 5051600 9731800 11744000 9770000 9616000 5798800 10200000 499630 11131000 6081900 7784500 5400600 9776600 11579000 9540300 9342100 1 1 0 1 1 1 1 1 1 1 1 56057000 0 56057000 6841 1779 6368 37114 44630 44630 1 GIVEFSGKPAAR Unmodified 1230.6721 0.67207093 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 1 By MS/MS By MS/MS 4.67 3.01 4 1 2 2 3 5 7 38.764 38.882 2;3 1.7444E-15 9526 20211116_3447_TMUAki_TMT10x_S_F8 191.31 168.63 31179000 46598000 266990 51090000 51230000 40858000 32246000 36135000 37700000 31464000 42269000 29032000 43498000 3074800 51650000 48658000 42149000 33870000 36838000 38277000 30922000 40634000 15 15 11 15 15 15 15 15 15 15 15 13375000 19362000 99084 21505000 33421000 26431000 14995000 15141000 16205000 13295000 17406000 12454000 18075000 1444600 21861000 31586000 26369000 16211000 15909000 16475000 13061000 16753000 6 6 3 6 6 6 6 6 6 6 6 17804000 27236000 167900 29584000 17810000 14427000 17251000 20994000 21496000 18169000 24863000 16578000 25423000 1630200 29788000 17073000 15780000 17659000 20930000 21802000 17861000 23880000 9 9 8 9 9 9 9 9 9 9 9 9125400000 5430400000 3695000000 6842 1779 6369 37115;37116;37117;37118;37119;37120;37121;37122;37123;37124;37125;37126 44631;44632;44633;44634;44635;44636;44637;44638;44639;44640;44641;44642;44643;44644;44645;44646 44646 16 GIVFEDVKVPK Unmodified 1229.702 0.70197407 623 P11310;P11310-2 ACADM Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 6.25 0.433 3 1 1 3 56.922 57.098 3 1.9424E-05 18670 20211116_3446_TMUAki_TMT10x_S_F7 102.4 72.857 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6843 623 6370 37127;37128;37129;37130 44647;44648;44649;44650 44650 4 GIVGGGMMR Unmodified 876.43098 0.43097772 3188 Q9UN86;Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 37.973 38.33 2 0.0045168 9379 20211116_3436_TMUAki_TMT10x_P_F8 79.454 36.68 887020 1521800 19675 1656300 1503300 1206700 1037000 979520 918980 878140 1273300 826050 1420500 100510 1673500 1430900 1251900 1072600 1004300 952640 861810 1217400 2 2 2 2 2 2 2 2 2 2 2 429650 692870 6713 725050 964990 818380 584810 464240 430710 411810 582600 400100 646640 49375 738790 916120 819990 608310 488310 450300 404350 557310 1 1 1 1 1 1 1 1 1 1 1 457370 828950 12962 931230 538310 388320 452210 515280 488270 466330 690730 425960 773880 51133 934670 514780 431940 464310 516030 502340 457460 660060 1 1 1 1 1 1 1 1 1 1 1 16976000 10657000 6318900 6844 3188 6371 37131;37132 44651;44652 44651 2 GIVKDIIHDPGR Unmodified 1318.7357 0.73573382 1384 P62917 RPL8 60S ribosomal protein L8 yes yes 0 0 0 1 By MS/MS By MS/MS 6.75 0.829 2 1 1 2 2 40.812 41.007 4 0.00033234 9807 20211116_3434_TMUAki_TMT10x_P_F6 84.365 75.544 5726900 10972000 51952 8508400 22911000 27805000 12712000 21850000 18873000 16555000 14240000 5332300 10229000 715220 9142500 21712000 27002000 13618000 22358000 18766000 16387000 13880000 4 4 2 4 4 4 4 4 4 4 4 5015700 9662600 45576 7536300 22048000 26918000 11899000 19878000 17136000 15046000 12834000 4670000 9008300 648190 8128300 20886000 26068000 12762000 20421000 17051000 14894000 12514000 3 3 1 3 3 3 3 3 3 3 3 711260 1309800 6376 972070 862830 886810 813170 1971900 1736600 1509100 1405600 662300 1220900 67033 1014300 826460 933070 856010 1936200 1714600 1492900 1366200 1 1 1 1 1 1 1 1 1 1 1 2014300000 1620700000 393560000 6845 1384 6372 37133;37134;37135;37136 44653;44654;44655;44656 44653 4 GIVLLEELLPK Unmodified 1222.7537 0.75367529 3279 Q9Y3D6 FIS1 Mitochondrial fission 1 protein yes yes 0 0 0 0 By MS/MS 6.33 0.471 2 1 3 81.063 81.062 2;3 3.9662E-11 28241 20211116_3435_TMUAki_TMT10x_P_F7 128.36 85.335 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6846 3279 6373 37137;37138;37139 44657;44658;44659 44659 3 GIVNEQFLLQR Unmodified 1315.7248 0.72483478 1115 P49748;P49748-2;P49748-3 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 1 3 59.172 59.795 2 3.4705E-14 19789 20211116_3446_TMUAki_TMT10x_S_F7 180.74 139.31 12351000 22179000 101280 20045000 15324000 18224000 14810000 13360000 11379000 12098000 15681000 11501000 20688000 1160000 20573000 14686000 18568000 14943000 13791000 11879000 11867000 14994000 2 2 2 2 2 2 2 2 2 2 2 6469400 12082000 80939 10271000 7057100 11294000 7613400 7269400 6245700 6107000 8023400 6024300 11267000 620020 10621000 6785500 11352000 7651200 7559300 6476900 6012300 7684800 1 1 1 1 1 1 1 1 1 1 1 5881500 10097000 20340 9774500 8266500 6930000 7196300 6090400 5132800 5990700 7658000 5476400 9420500 539980 9951900 7900600 7216400 7291600 6231700 5401700 5854900 7309300 1 1 1 1 1 1 1 1 1 1 1 1539800000 588380000 951430000 6847 1115 6374 37140;37141;37142;37143 44660;44661;44662;44663 44663 4 GIVPLAK Unmodified 696.45341 0.45341094 868 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 By MS/MS By MS/MS 5.75 2.82 2 1 2 3 4 4 48.109 48.075 2 0.001158 13280 20211116_3436_TMUAki_TMT10x_P_F8 140.79 71.351 24718000 37493000 185720 39234000 29217000 30179000 26832000 22049000 24647000 22195000 29824000 23015000 34991000 2133500 39767000 27956000 31120000 27274000 22833000 25353000 21671000 28610000 4 4 1 4 4 4 4 4 4 4 4 10159000 15008000 0 16148000 14859000 17656000 11247000 9768200 10307000 9227800 12281000 9459000 14008000 885480 16416000 14155000 17717000 11568000 10314000 10596000 9034600 11786000 2 2 0 2 2 2 2 2 2 2 2 14559000 22485000 185720 23086000 14358000 12523000 15585000 12281000 14340000 12967000 17544000 13556000 20983000 1248000 23351000 13801000 13403000 15706000 12519000 14757000 12636000 16824000 2 2 1 2 2 2 2 2 2 2 2 2341900000 1053100000 1288800000 6848 868 6375 37144;37145;37146;37147;37148;37149;37150;37151 44664;44665;44666;44667;44668;44669;44670;44671 44667 8 GIVVTAYSPLGSPDRPWAKPEDPSLLEDPR Unmodified 3261.667 0.66699213 680 P15121 AKR1B1 Aldose reductase yes yes 0 0 0 2 By MS/MS By MS/MS 6.6 0.917 1 4 3 2 6 4 70.914 70.993 4;5 5.6032E-20 22086 20211116_3434_TMUAki_TMT10x_P_F6 126.59 115.89 74135000 123040000 1088200 131450000 86418000 99906000 100840000 41838000 31467000 52886000 82004000 69032000 114840000 7010100 133030000 83269000 102420000 99382000 45799000 36841000 51196000 77541000 11 11 6 11 11 11 11 11 11 11 11 50887000 81503000 326270 89674000 57247000 76614000 69225000 25386000 19681000 34522000 54507000 47380000 76081000 4300100 90710000 55192000 77703000 68058000 28669000 23426000 33339000 51503000 7 7 3 7 7 7 7 7 7 7 7 23248000 41532000 761980 41773000 29171000 23292000 31613000 16452000 11786000 18364000 27496000 21652000 38755000 2709900 42322000 28077000 24715000 31325000 17130000 13415000 17857000 26038000 4 4 3 4 4 4 4 4 4 4 4 21128000000 12478000000 8649800000 6849 680 6376 37152;37153;37154;37155;37156;37157;37158;37159;37160;37161 44672;44673;44674;44675;44676;44677;44678;44679;44680;44681;44682 44674 11 GIVVYTGDR Unmodified 978.51345 0.51344502 497 P05023;P05023-3;P05023-4;P05023-2 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes no 0 0 0 0 By MS/MS By MS/MS 4.43 0.904 1 3 2 1 3 4 39.839 39.964 2 3.1604E-05 10564 20211116_3431_TMUAki_TMT10x_P_F4 113.26 75.697 9072000 14173000 80195 16743000 9122800 7794800 9206800 8612800 8832500 7896900 12060000 8447400 13235000 811870 16766000 8753400 8511200 9322900 8694200 9116400 7742000 11534000 5 5 4 5 5 5 5 5 5 5 5 432890 619750 1113 732810 850950 735560 471180 394910 424250 358220 536850 403070 578720 42782 739640 806450 741510 496340 417610 437650 351370 514400 1 1 1 1 1 1 1 1 1 1 1 8639100 13554000 79082 16011000 8271900 7059300 8735700 8217900 8408200 7538700 11523000 8044300 12656000 769090 16026000 7946900 7769700 8826600 8276600 8678800 7390600 11019000 4 4 3 4 4 4 4 4 4 4 4 381290000 31076000 350220000 6850 497 6377 37162;37163;37164;37165;37166;37167;37168 44683;44684;44685;44686;44687;44688;44689;44690;44691 44684 9 GIWHNDNK Unmodified 982.46208 0.46207815 642 P12277;P06732 CKB;CKM Creatine kinase B-type;Creatine kinase M-type;Creatine kinase M-type, N-terminally processed yes no 0 0 0 0 By MS/MS 4 0 1 1 32.713 32.739 3 0.11079 7460 20211116_3431_TMUAki_TMT10x_P_F4 35.438 22.811 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6851 642 6378 37169 44692 44692 1 GIYAYGFEK Unmodified 1046.5073 0.50729701 1277;973;1697 P38919;P60842;P60842-2;Q14240;Q14240-2 EIF4A3;EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed;Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 56.851 57.197 2 6.2474E-06 16785 20211116_3445_TMUAki_TMT10x_S_F6 168.72 114.17 43281000 61834000 223470 106370000 46337000 45455000 34889000 36578000 38356000 32614000 48658000 40299000 57864000 3584200 104460000 44139000 49864000 36095000 37519000 39235000 32016000 46619000 6 6 3 6 6 6 6 6 6 6 6 20310000 28131000 72761 47469000 30863000 33648000 20737000 17236000 18886000 15714000 22472000 18911000 26321000 1871400 46853000 29341000 34762000 21506000 18307000 19421000 15410000 21567000 3 3 2 3 3 3 3 3 3 3 3 22971000 33704000 150710 58900000 15474000 11807000 14152000 19342000 19471000 16900000 26186000 21387000 31543000 1712800 57604000 14798000 15103000 14589000 19213000 19814000 16606000 25053000 3 3 1 3 3 3 3 3 3 3 3 3199100000 1521700000 1677500000 6852 973;1277;1697 6379 37170;37171;37172;37173 44693;44694;44695;44696;44697;44698 44697 6 GIYAYGFEKPSAIQQR Unmodified 1826.9315 0.93153309 1277;973;1697 P38919;P60842;P60842-2;Q14240;Q14240-2 EIF4A3;EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed;Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 0 0 0 1 By MS/MS By MS/MS 3.19 2.32 5 7 3 1 1 2 2 10 11 56.602 56.522 2;3;4 6.1762E-58 17112 20211116_3429_TMUAki_TMT10x_P_F2 279.86 257.53 253180000 449350000 7358200 425490000 352500000 448270000 276620000 380850000 376280000 347080000 366350000 235770000 419200000 27177000 436100000 336400000 453750000 287640000 389620000 378090000 340370000 353710000 27 27 15 27 27 27 27 27 27 27 27 120520000 202660000 907810 188080000 214850000 305750000 168140000 176560000 172150000 151770000 157200000 112210000 189040000 10811000 194670000 204800000 301320000 173120000 185290000 174420000 149240000 152110000 13 13 7 13 13 13 13 13 13 13 13 132660000 246700000 6450400 237410000 137650000 142520000 108480000 204290000 204130000 195310000 209150000 123560000 230160000 16366000 241430000 131590000 152430000 114520000 204330000 203660000 191120000 201610000 14 14 8 14 14 14 14 14 14 14 14 113950000000 70085000000 43864000000 6853 973;1277;1697 6380 37174;37175;37176;37177;37178;37179;37180;37181;37182;37183;37184;37185;37186;37187;37188;37189;37190;37191;37192;37193;37194 44699;44700;44701;44702;44703;44704;44705;44706;44707;44708;44709;44710;44711;44712;44713;44714;44715;44716;44717;44718;44719;44720;44721;44722;44723;44724;44725;44726;44727 44707 29 GIYFADMVSK Oxidation (M) 1145.5427 0.54269624 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 1 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 54.906 55.138 2;3 0.0036215 15950 20211116_3445_TMUAki_TMT10x_S_F6 67.726 47.964 12239000 20198000 101680 20252000 16748000 18216000 13221000 22292000 21925000 18842000 18714000 11395000 18847000 1020100 20626000 15967000 18774000 13864000 22356000 21810000 18544000 18152000 4 4 1 4 4 4 4 4 4 4 4 3520300 5351000 0 5545000 6792700 8917400 4628800 6245600 6297200 5447500 4924800 3277400 4993800 295080 5693500 6456000 8816400 4860000 6461100 6284600 5353200 4793300 1 1 0 1 1 1 1 1 1 1 1 8718500 14847000 101680 14707000 9955800 9298100 8592100 16047000 15627000 13395000 13789000 8117700 13853000 725030 14933000 9510800 9957600 9004400 15895000 15525000 13191000 13359000 3 3 1 3 3 3 3 3 3 3 3 1744800000 664440000 1080400000 6854 586 6381 37195;37196;37197 44728;44729;44730;44731 44729 557 4 GIYFADMVSK Unmodified 1129.5478 0.54778161 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 66.268 66.623 2 7.2181E-09 22707 20211116_3446_TMUAki_TMT10x_S_F7 145.17 83.173 17735000 28790000 77599 30026000 25148000 31740000 23796000 13506000 12332000 14869000 21308000 16513000 26869000 1591600 30570000 24080000 31819000 23853000 14693000 13366000 14466000 20277000 2 2 1 2 2 2 2 2 2 2 2 17735000 28790000 77599 30026000 25148000 31740000 23796000 13506000 12332000 14869000 21308000 16513000 26869000 1591600 30570000 24080000 31819000 23853000 14693000 13366000 14466000 20277000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1328000000 1328000000 0 6855 586 6381 37198;37199;37200;37201 44732;44733;44734;44735 44734 4 GIYPHEPK Unmodified 939.48142 0.48141661 100 O00541;O00541-2 PES1 Pescadillo homolog yes no 0 0 0 0 By MS/MS 5 0 1 1 32.489 32.429 3 0.063006 7665 20211116_3433_TMUAki_TMT10x_P_F5 47.574 32.135 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6856 100 6382 37202 44736 44736 1 GIYPSETFTR Unmodified 1169.5717 0.57168818 1614 Q13257;Q13257-2 MAD2L1 Mitotic spindle assembly checkpoint protein MAD2A yes no 0 0 0 0 By MS/MS By MS/MS 4.71 1.03 1 2 2 2 4 3 45.549 45.688 2 6.8835E-14 12953 20211116_3442_TMUAki_TMT10x_S_F4 221.94 175.99 33819000 54143000 127360 64001000 59925000 63343000 39210000 40015000 40157000 36633000 46004000 31487000 50558000 2937500 64585000 56923000 64046000 40884000 41760000 41018000 35917000 44197000 7 7 2 7 7 7 7 7 7 7 7 27575000 44148000 95688 51678000 54682000 58923000 34796000 32261000 32156000 30038000 37391000 25674000 41222000 2458100 52296000 51918000 58981000 36253000 34080000 33014000 29428000 35908000 4 4 1 4 4 4 4 4 4 4 4 6244000 9995400 31670 12323000 5243500 4419600 4413900 7754100 8000900 6594900 8612500 5813600 9335500 479400 12289000 5005300 5064800 4631700 7680900 8004200 6488700 8289200 3 3 1 3 3 3 3 3 3 3 3 2736300000 2020800000 715520000 6857 1614 6383 37203;37204;37205;37206;37207;37208;37209 44737;44738;44739;44740;44741;44742;44743;44744;44745 44742 9 GKATISNDGATILK Unmodified 1387.7671 0.76709352 2609 Q99832;Q99832-3 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 1 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 42.607 42.962 3 9.3618E-10 10815 20211116_3447_TMUAki_TMT10x_S_F8 137.17 96.074 1674400 3070700 19316 2349500 5423800 5778600 2970900 5518200 5721000 3988700 3982400 1559200 2862600 206950 2499100 5140000 5669500 3226900 5577900 5638100 3958600 3895500 3 3 2 3 3 3 3 3 3 3 3 1076100 1851400 0 1445500 4325500 4659200 2115400 3495400 3567900 2499400 2408400 1002000 1726100 132340 1551300 4091700 4522100 2306200 3582800 3525000 2482000 2359200 1 1 0 1 1 1 1 1 1 1 1 598320 1219300 19316 904060 1098400 1119300 855590 2022700 2153100 1489300 1574000 557240 1136500 74611 947780 1048200 1147300 920720 1995000 2113100 1476500 1536300 2 2 2 2 2 2 2 2 2 2 2 267420000 185740000 81672000 6858 2609 6384 37210;37211;37212 44746;44747;44748 44748 3 GKDMVVDIQR Unmodified 1159.6019 0.60194245 3226 Q9Y266 NUDC Nuclear migration protein nudC yes yes 0 0 0 1 By MS/MS 5 0 1 1 39.024 39.032 3 0.0049416 10349 20211116_3433_TMUAki_TMT10x_P_F5 68.676 43.334 1543300 2379800 37738 2387500 2880100 2587700 1868900 1137700 1114600 1204100 1735500 1437200 2220600 181840 2438100 2738400 2591200 1925200 1231900 1189000 1173300 1654900 1 1 1 1 1 1 1 1 1 1 1 1543300 2379800 37738 2387500 2880100 2587700 1868900 1137700 1114600 1204100 1735500 1437200 2220600 181840 2438100 2738400 2591200 1925200 1231900 1189000 1173300 1654900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 308090000 308090000 0 6859 3226 6385 37213 44749 44749 1 GKDMVVDIQR Oxidation (M) 1175.5969 0.59685707 3226 Q9Y266 NUDC Nuclear migration protein nudC yes yes 0 0 1 1 By MS/MS 6 0 1 1 32.98 32.954 3 0.024934 6655 20211116_3434_TMUAki_TMT10x_P_F6 57.174 32.319 122190 156120 0 161840 144100 160720 110300 72228 68368 74296 123680 113760 145700 9608.7 164690 137260 161810 112350 77964 73350 72476 117590 1 1 0 1 1 1 1 1 1 1 1 122190 156120 0 161840 144100 160720 110300 72228 68368 74296 123680 113760 145700 9608.7 164690 137260 161810 112350 77964 73350 72476 117590 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3639200 3639200 0 6860 3226 6385 37214 44750 44750 3218 1 GKDQVVILHHMLSK Oxidation (M) 1619.8817 0.88174613 2769 Q9H0A0 NAT10 N-acetyltransferase 10 yes yes 0 0 1 1 By MS/MS 1 0 1 1 36.682 36.623 5 0.022314 10661 20211116_3439_TMUAki_TMT10x_S_F1 50.608 42.884 319820 539000 13819 596060 344230 310930 326140 403900 406380 374140 444860 297890 503160 39736 599780 330440 336430 334250 405080 411280 366630 427940 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 319820 539000 13819 596060 344230 310930 326140 403900 406380 374140 444860 297890 503160 39736 599780 330440 336430 334250 405080 411280 366630 427940 1 1 1 1 1 1 1 1 1 1 1 16650000 0 16650000 6861 2769 6386 37215 44751 44751 2937 1 GKEDALVTK Unmodified 959.52876 0.52876073 765 P22087 FBL rRNA 2'-O-methyltransferase fibrillarin yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.593 35.647 3 0.0064358 7702 20211116_3444_TMUAki_TMT10x_S_F5 66.267 36.012 2404100 3817600 27846 3395700 4143900 3948100 2965000 2316300 2667200 2356400 3063400 2238600 3560600 242560 3502200 3944900 3951300 3059900 2438600 2740500 2299700 2942900 2 2 1 2 2 2 2 2 2 2 2 1696100 2607400 27846 2391100 3366600 3269800 2097400 1575000 1840600 1618600 2109100 1579400 2432100 189970 2467700 3197900 3238700 2185900 1688200 1893300 1579000 2026300 1 1 1 1 1 1 1 1 1 1 1 707980 1210200 0 1004600 777240 678290 867580 741360 826520 737740 954300 659150 1128500 52593 1034500 747060 712540 874030 750480 847170 720670 916620 1 1 0 1 1 1 1 1 1 1 1 125740000 100950000 24786000 6862 765 6387 37216;37217;37218 44752;44753 44753 2 GKEDEGEEAASPMLQIQR Unmodified 1986.9317 0.93166902 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 1 By MS/MS 3 0 1 1 43.716 43.754 3 8.2093E-33 13439 20211116_3430_TMUAki_TMT10x_P_F3 199.01 179.69 526650 782960 0 1254900 1709200 1080400 901120 353390 348520 368930 698190 490340 732350 58196 1244200 1618400 1095100 939190 396460 391150 359680 662690 1 1 0 1 1 1 1 1 1 1 1 526650 782960 0 1254900 1709200 1080400 901120 353390 348520 368930 698190 490340 732350 58196 1244200 1618400 1095100 939190 396460 391150 359680 662690 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 83412000 83412000 0 6863 1695 6388 37219 44754 44754 1 GKEDEGEEAASPMLQIQR Oxidation (M) 2002.9266 0.92658365 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 1 1 By MS/MS 3 0 1 1 37.694 37.437 3 0.006522 11998 20211116_3441_TMUAki_TMT10x_S_F3 57.009 46.375 352690 594670 5422 818750 301000 326180 307330 577260 748090 444490 617860 328430 555720 33570 812070 289100 368310 325050 570270 737150 439580 600050 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 352690 594670 5422 818750 301000 326180 307330 577260 748090 444490 617860 328430 555720 33570 812070 289100 368310 325050 570270 737150 439580 600050 1 1 1 1 1 1 1 1 1 1 1 38931000 0 38931000 6864 1695 6388 37220 44755 44755 2278 1 GKEDPWNSITSGALTGAVLAAR Unmodified 2213.144 0.14404506 292 O60830;O60830-2 TIMM17B Mitochondrial import inner membrane translocase subunit Tim17-B yes no 0 0 0 1 By MS/MS 1 0 1 1 73.76 73.76 3 1.7003E-07 23750 20211116_3428_TMUAki_TMT10x_P_F1 94.019 76.941 6727800 10322000 12256 9412500 5714500 10587000 7526600 5742200 4880600 5541700 7431700 6264200 9628000 540060 9684100 5524600 10604000 7457900 6076800 5171500 5420500 7090200 2 2 1 2 2 2 2 2 2 2 2 6727800 10322000 12256 9412500 5714500 10587000 7526600 5742200 4880600 5541700 7431700 6264200 9628000 540060 9684100 5524600 10604000 7457900 6076800 5171500 5420500 7090200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 416230000 416230000 0 6865 292 6389 37221 44756;44757 44756 2 GKENQLQLSCFINQEVK Unmodified 2034.0204 0.020424451 1220 P54578;P54578-2;P54578-3 USP14 Ubiquitin carboxyl-terminal hydrolase 14 yes no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 4 4 4 4 61.251 61.623 3;4 2.0713E-21 20549 20211116_3446_TMUAki_TMT10x_S_F7 166.48 149.4 47011000 80843000 726860 74644000 56159000 70229000 57585000 51865000 52617000 57207000 61758000 43777000 75412000 4667300 76521000 53925000 71404000 58183000 53819000 54071000 55651000 59293000 8 8 7 8 8 8 8 8 8 8 8 18823000 32105000 244170 29865000 26838000 41981000 27077000 20509000 20381000 22562000 24654000 17528000 29949000 1900400 30807000 25755000 41537000 27246000 21997000 21179000 21950000 23651000 3 3 3 3 3 3 3 3 3 3 3 28188000 48738000 482680 44779000 29320000 28249000 30508000 31356000 32236000 34645000 37104000 26249000 45463000 2766900 45715000 28170000 29867000 30937000 31822000 32892000 33701000 35642000 5 5 4 5 5 5 5 5 5 5 5 9255100000 4619700000 4635400000 6866 1220 6390 37222;37223;37224;37225;37226;37227;37228;37229 44758;44759;44760;44761;44762;44763;44764;44765;44766 44762 9 GKFEDMAK Unmodified 924.4375 0.43750288 574 P09429;B2RPK0;P23497 HMGB1;HMGB1P1;SP100 High mobility group protein B1;Putative high mobility group protein B1-like 1;Nuclear autoantigen Sp-100 yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 38.848 38.908 3 0.04595 9052 20211116_3444_TMUAki_TMT10x_S_F5 51.092 26.71 13059000 20323000 73614 21056000 23234000 17946000 16504000 7352200 6893400 7465400 14633000 12160000 18966000 1277600 21382000 22112000 18236000 16795000 8013200 7708000 7286500 13877000 4 4 2 4 4 4 4 4 4 4 4 11135000 17125000 73614 17721000 21090000 16747000 14338000 6302700 6005600 6396100 12281000 10368000 15981000 1115400 18022000 20055000 16886000 14639000 6938100 6697000 6243000 11653000 3 3 2 3 3 3 3 3 3 3 3 1924400 3198300 0 3335100 2144600 1199300 2165600 1049500 887790 1069300 2352500 1791800 2984900 162220 3360700 2056900 1350100 2156000 1075200 1011100 1043500 2224000 1 1 0 1 1 1 1 1 1 1 1 354150000 237730000 116420000 6867 574 6391 37230;37231;37232 44767;44768;44769 44769 3 GKFGHEFLEFEFRPDGK Unmodified 2038.9901 0.9901106 1309;2405 P61326;P61326-2;Q96A72 MAGOH;MAGOHB Protein mago nashi homolog;Protein mago nashi homolog 2 no no 0 0 0 2 By MS/MS By MS/MS 6.87 1.02 2 3 5 5 7 8 57.887 58.172 3;4;5 3.5529E-29 17415 20211116_3436_TMUAki_TMT10x_P_F8 188.84 165.74 174530000 292030000 1244300 254280000 225290000 316640000 236140000 237860000 222190000 233150000 236780000 162510000 272350000 16057000 263000000 216350000 316960000 238530000 245670000 227170000 227900000 227970000 17 17 11 17 17 17 17 17 17 17 17 98819000 162130000 574820 140400000 119940000 224760000 137510000 134610000 130570000 132980000 134000000 92013000 151200000 8779400 146030000 115470000 221740000 138350000 141360000 133250000 129940000 129160000 10 10 5 10 10 10 10 10 10 10 10 75714000 129890000 669440 113880000 105350000 91885000 98635000 103250000 91624000 100170000 102780000 70502000 121150000 7278100 116980000 100880000 95219000 100180000 104310000 93915000 97957000 98806000 7 7 6 7 7 7 7 7 7 7 7 49024000000 24078000000 24946000000 6868 1309;2405 6392 37233;37234;37235;37236;37237;37238;37239;37240;37241;37242;37243;37244;37245;37246;37247 44770;44771;44772;44773;44774;44775;44776;44777;44778;44779;44780;44781;44782;44783;44784;44785;44786;44787 44779 18 GKFGRVDVAVNCAGIAVASK Unmodified 2018.0731 0.073128724 2598 Q99714;Q99714-2 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 0 0 0 2 By matching By MS/MS 4 0 2 1 1 52.431 52.554 4 1.4465E-12 15912 20211116_3442_TMUAki_TMT10x_S_F4 127.17 112.71 1329500 2236100 0 2131500 2246200 1158500 1018700 2104700 1916900 1754600 1849900 1237800 2086100 121100 2167300 2122800 1261400 1125300 2081700 1908400 1728000 1786600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1329500 2236100 0 2131500 2246200 1158500 1018700 2104700 1916900 1754600 1849900 1237800 2086100 121100 2167300 2122800 1261400 1125300 2081700 1908400 1728000 1786600 1 1 0 1 1 1 1 1 1 1 1 795560000 314200000 481360000 6869 2598 6393 37248;37249 44788 44788 1 GKFLEMCNDLLAR Unmodified 1565.7694 0.76941848 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 1 1 1 1 61.929 61.885 3 1.714E-11 18901 20211116_3436_TMUAki_TMT10x_P_F8 142.45 119.22 24234000 41796000 173140 30539000 37107000 53373000 39916000 28365000 22776000 28855000 33071000 22565000 38958000 2283100 32292000 35656000 52403000 39811000 30116000 24286000 28161000 31584000 5 5 3 5 5 5 5 5 5 5 5 21171000 36447000 121740 26000000 33034000 49597000 36409000 24256000 19162000 24636000 28761000 19713000 33970000 1967200 27615000 31762000 48501000 36220000 25952000 20589000 24045000 27448000 4 4 2 4 4 4 4 4 4 4 4 3062900 5348800 51396 4538900 4072900 3776500 3507200 4109000 3613700 4218800 4309600 2852200 4988000 315980 4676200 3894200 3901700 3590400 4164300 3696300 4115700 4135700 1 1 1 1 1 1 1 1 1 1 1 892440000 540500000 351940000 6870 916 6394 37250;37251 44789;44790;44791;44792;44793 44791 5 GKFQDNFEFVQWFK Unmodified 1818.873 0.87295558 1824 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 77.945 77.895 3 7.6319E-07 25634 20211116_3440_TMUAki_TMT10x_S_F2 100.54 84.048 7075200 10634000 0 8986100 6409300 11492000 8767000 4437400 4125300 5428100 6770800 6587500 9916700 543460 9321200 6202600 11394000 8625700 4897300 4493800 5260600 6449600 1 1 0 1 1 1 1 1 1 1 1 7075200 10634000 0 8986100 6409300 11492000 8767000 4437400 4125300 5428100 6770800 6587500 9916700 543460 9321200 6202600 11394000 8625700 4897300 4493800 5260600 6449600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 897360000 897360000 0 6871 1824 6395 37252;37253 44794;44795 44795 2 GKFQDNFEFVQWFKK Unmodified 1946.9679 0.9679186 1824 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 2 By MS/MS By MS/MS 3.83 0.687 2 3 1 3 3 74.409 74.332 3;4 8.6053E-24 24216 20211116_3431_TMUAki_TMT10x_P_F4 190.11 159.69 47916000 77588000 511580 67659000 49325000 56144000 60351000 23256000 20222000 28986000 46724000 44618000 72360000 4359400 69552000 47596000 57167000 59398000 25477000 23269000 28073000 44253000 6 6 5 6 6 6 6 6 6 6 6 23163000 35703000 99065 31872000 24482000 36007000 28851000 11002000 9318400 13424000 21768000 21567000 33300000 1921500 32847000 23583000 35865000 28432000 12520000 10776000 13011000 20614000 3 3 2 3 3 3 3 3 3 3 3 24753000 41885000 412520 35787000 24843000 20137000 31500000 12255000 10904000 15562000 24956000 23051000 39060000 2437900 36705000 24013000 21302000 30966000 12956000 12493000 15062000 23639000 3 3 3 3 3 3 3 3 3 3 3 6149700000 2986000000 3163700000 6872 1824 6396 37254;37255;37256;37257;37258;37259 44796;44797;44798;44799;44800;44801;44802 44798 7 GKFSEGEATLR Unmodified 1193.6041 0.60405094 1065 P47897;P47897-2 QARS Glutamine--tRNA ligase yes no 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 34.82 34.89 3 0.036021 7424 20211116_3444_TMUAki_TMT10x_S_F5 51.135 25.793 931530 1581000 19532 1718400 2195500 1803200 1198200 1183400 1248300 1042300 1511100 867480 1475700 110470 1744600 2081100 1817800 1269100 1230300 1277100 1023800 1449600 2 2 1 2 2 2 2 2 2 2 2 568120 1007100 19532 1058300 1840700 1488600 840470 771690 791680 668030 993190 529120 939940 83128 1082400 1741000 1473800 903320 817680 814680 656700 951850 1 1 1 1 1 1 1 1 1 1 1 363410 573860 0 660110 354760 314580 357700 411730 456630 374250 517940 338350 535800 27345 662160 340060 343970 365740 412590 462390 367050 497740 1 1 0 1 1 1 1 1 1 1 1 52686000 36898000 15788000 6873 1065 6397 37260;37261 44803;44804 44804 2 GKGAAAAAAASGAAGGGGGGAGAGAPGGGR Unmodified 2137.0373 0.037288578 1964 Q68E01;Q68E01-2 INTS3 Integrator complex subunit 3 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 32.374 32.389 4 7.1042E-15 6954 20211116_3428_TMUAki_TMT10x_P_F1 110.01 97.17 93028 182640 544.93 191970 193650 154740 106980 114600 122640 134040 148970 86622 170450 9629.8 194620 183540 159040 113530 119130 125010 130110 142890 2 2 2 2 2 2 2 2 2 2 2 43671 84274 329.12 83836 139610 109080 68997 53230 58469 62861 66657 40665 78635 5271 85935 132110 108320 73353 57228 60233 60996 64048 1 1 1 1 1 1 1 1 1 1 1 49357 98363 215.81 108130 54045 45660 37985 61370 64172 71183 82309 45958 91819 4358.8 108690 51430 50722 40180 61897 64781 69116 78839 1 1 1 1 1 1 1 1 1 1 1 43692000 21908000 21784000 6874 1964 6398 37262;37263 44805;44806 44805 2 GKGGEIQPVSVK Unmodified 1197.6717 0.67173657 1316 P61604 HSPE1 10 kDa heat shock protein, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 36.264 36.338 3 0.0011562 9271 20211116_3433_TMUAki_TMT10x_P_F5 73.156 48.303 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6875 1316 6399 37264;37265 44807;44808 44807 2 GKIEEDSEVLMMIK Oxidation (M) 1636.8052 0.80519487 300 O60888;O60888-3;O60888-2 CUTA Protein CutA yes no 0 0 1 1 By MS/MS 4 0 1 1 64.328 64.171 3 0.043302 20678 20211116_3442_TMUAki_TMT10x_S_F4 45.863 34.07 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6876 300 6400 37266 44809 44809 230 1 GKIELEETIK Unmodified 1158.6496 0.64960415 1260 P56556 NDUFA6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 47.326 47.48 3 1.0254E-07 13346 20211116_3431_TMUAki_TMT10x_P_F4 118.87 28.181 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6877 1260 6401 37267;37268 44810;44811 44810 2 GKITDLANLSAANHDAAIFPGGFGAAK Unmodified 2626.3503 0.35034944 2 P0DPI2;A0A0B4J2D5;P0DPI2-2;A0A0B4J2D5-2 yes no 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 47.823 47.669 4 5.1486E-18 23305 20211116_3429_TMUAki_TMT10x_P_F2 136.4 124.98 3855100 6472700 34971 4562100 3904900 9373000 4870000 5879700 5453000 5562700 5532600 3589800 6032600 352910 4861000 3770600 9173400 4907400 6144900 5524800 5445900 5334600 2 2 2 2 2 2 2 2 2 2 2 3855100 6472700 34971 4562100 3904900 9373000 4870000 5879700 5453000 5562700 5532600 3589800 6032600 352910 4861000 3770600 9173400 4907400 6144900 5524800 5445900 5334600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1443400000 1443400000 0 6878 2 6402 37269;37270 44812;44813 44812 2 GKITFCTGIR Unmodified 1151.6121 0.61211321 1232 P55036;P55036-2 PSMD4 26S proteasome non-ATPase regulatory subunit 4 yes no 0 0 0 1 By MS/MS 4 0 1 1 41.374 41.583 3 0.10292 11358 20211116_3442_TMUAki_TMT10x_S_F4 42.095 22.309 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6879 1232 6403 37271 44814 44814 1 GKLDGNQDLIR Unmodified 1227.6571 0.65714914 1083 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 37.373 37.435 3 1.6132E-06 9693 20211116_3433_TMUAki_TMT10x_P_F5 123.95 88.271 3239500 5182700 68732 5772700 7268500 5555600 3935600 3509800 3818500 3066800 4728200 3016800 4838200 389060 5844200 6889800 5627100 4162700 3658500 3922100 3013500 4533000 3 3 3 3 3 3 3 3 3 3 3 2259200 3559300 55994 3993200 6362600 4752900 2848000 2533000 2731500 2195400 3315700 2103900 3322800 296960 4054500 6015800 4745200 3069000 2677300 2804700 2158100 3180500 2 2 2 2 2 2 2 2 2 2 2 980310 1623400 12738 1779400 905890 802670 1087600 976820 1087000 871430 1412500 912860 1515400 92104 1789700 873950 881870 1093600 981220 1117400 855420 1352500 1 1 1 1 1 1 1 1 1 1 1 268940000 216250000 52694000 6880 1083 6404 37272;37273;37274 44815;44816;44817 44816 3 GKLDVQFSGLTK Unmodified 1291.7136 0.71360139 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 1 By MS/MS By MS/MS 8 0 4 2 2 54.998 55.027 3 9.7026E-16 15601 20211116_3447_TMUAki_TMT10x_S_F8 167.32 142.11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6881 755 6405 37275;37276;37277;37278 44818;44819;44820;44821 44820 4 GKLEAIITPPPAK Unmodified 1333.7969 0.79693709 327 O75367;O75367-2;O75367-3 H2AFY Core histone macro-H2A.1 yes no 0 0 0 1 By MS/MS By MS/MS 3.56 3.17 4 2 3 4 5 53.781 53.647 3;4 5.8479E-05 15520 20211116_3436_TMUAki_TMT10x_P_F8 97.86 82.594 51016000 82105000 424110 92288000 82228000 82478000 60951000 63013000 64087000 58666000 71128000 47503000 76650000 4825500 93283000 78320000 84191000 63035000 64919000 65310000 57476000 68397000 15 15 12 15 15 15 15 15 15 15 15 28789000 45777000 154720 51716000 61041000 63545000 39970000 35545000 36755000 33658000 40307000 26806000 42737000 2853900 52516000 58000000 63376000 41545000 37496000 37659000 32950000 38773000 8 8 6 8 8 8 8 8 8 8 8 22227000 36328000 269390 40572000 21188000 18934000 20981000 27468000 27332000 25008000 30821000 20697000 33913000 1971600 40767000 20320000 20815000 21489000 27423000 27651000 24525000 29623000 7 7 6 7 7 7 7 7 7 7 7 4168300000 2943200000 1225000000 6882 327 6406 37279;37280;37281;37282;37283;37284;37285;37286;37287 44822;44823;44824;44825;44826;44827;44828;44829;44830;44831;44832;44833;44834;44835;44836;44837;44838 44829 17 GKLEAIITPPPAKK Unmodified 1461.8919 0.89190011 327 O75367;O75367-2;O75367-3 H2AFY Core histone macro-H2A.1 yes no 0 0 0 2 By MS/MS By MS/MS 2.6 0.49 2 3 3 2 49.22 49.054 4;5 0.0001557 15590 20211116_3430_TMUAki_TMT10x_P_F3 92.265 87.717 29642000 44115000 580250 45953000 46570000 42334000 32327000 41802000 38228000 34288000 39915000 27603000 41171000 3177700 46696000 44327000 43339000 33718000 42304000 38692000 33797000 38453000 9 9 7 9 9 9 9 9 9 9 9 14584000 20291000 455710 22164000 29067000 28131000 16122000 19362000 17963000 15939000 19021000 13582000 18941000 1811200 22568000 27571000 28093000 17087000 20026000 18231000 15708000 18316000 5 5 4 5 5 5 5 5 5 5 5 15058000 23824000 124530 23789000 17503000 14203000 16205000 22440000 20265000 18349000 20895000 14021000 22230000 1366600 24128000 16756000 15246000 16631000 22278000 20461000 18089000 20137000 4 4 3 4 4 4 4 4 4 4 4 3069400000 2036300000 1033200000 6883 327 6407 37288;37289;37290;37291;37292 44839;44840;44841;44842;44843;44844;44845;44846;44847 44840 9 GKLEEQRPER Unmodified 1240.6524 0.65239812 656 P13693;P13693-2 TPT1 Translationally-controlled tumor protein yes no 0 0 0 2 By MS/MS By MS/MS 4 1 1 1 1 1 26.51 26.327 3 0.020587 7695 20211116_3441_TMUAki_TMT10x_S_F3 61.932 19.506 149830 254950 0 211930 128110 145440 147880 97808 126950 101120 145940 139490 237740 9293.1 218240 123150 151200 148320 101950 130740 98625 140200 2 2 0 2 2 2 2 2 2 2 2 44025 67600 0 59741 42654 58422 41607 31311 41951 26948 37683 40987 63049 3051.5 61481 40834 58988 42269 33072 42511 26499 36483 1 1 0 1 1 1 1 1 1 1 1 105810 187350 0 152180 85457 87022 106270 66497 85000 74175 108260 98501 174690 6241.7 156760 82317 92210 106050 68875 88229 72127 103720 1 1 0 1 1 1 1 1 1 1 1 6419300 2040600 4378700 6884 656 6408 37293;37294 44848;44849 44849 2 GKLGLVGVNLTLDGVK Unmodified 1581.9454 0.94539224 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 1 By MS/MS 3 0 1 1 69.691 69.42 3 0.00069256 24027 20211116_3430_TMUAki_TMT10x_P_F3 68.845 50.114 4711900 8371400 0 7581900 6880000 11347000 6170300 6915100 6783700 6790600 6394200 4387200 7808500 411900 7846900 6578500 11227000 6314900 7250800 6860600 6637100 6180300 1 1 0 1 1 1 1 1 1 1 1 4711900 8371400 0 7581900 6880000 11347000 6170300 6915100 6783700 6790600 6394200 4387200 7808500 411900 7846900 6578500 11227000 6314900 7250800 6860600 6637100 6180300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 332990000 332990000 0 6885 1200 6409 37295 44850 44850 1 GKLGVCFDVPTASVTEIQEK Unmodified 2177.1038 0.10381973 2918 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 1 By MS/MS 7 0 1 1 65.189 65.594 3 1.8301E-06 22197 20211116_3446_TMUAki_TMT10x_S_F7 84.499 58.063 3762100 6694000 0 5607800 4713700 3712200 3536200 3683000 3251600 3638000 4715700 3502800 6242100 314700 5769300 4489400 3898000 3639700 3744800 3372400 3555000 4503700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3762100 6694000 0 5607800 4713700 3712200 3536200 3683000 3251600 3638000 4715700 3502800 6242100 314700 5769300 4489400 3898000 3639700 3744800 3372400 3555000 4503700 1 1 0 1 1 1 1 1 1 1 1 749150000 0 749150000 6886 2918 6410 37296 44851 44851 1 GKLIEAEDNMNCQMSNITVTYR 2 Oxidation (M) 2618.1775 0.17747173 1355 P62318;P62318-2 SNRPD3 Small nuclear ribonucleoprotein Sm D3 yes no 0 0 2 1 By MS/MS 5 0 1 1 46.205 46.363 4 0.00011516 13176 20211116_3433_TMUAki_TMT10x_P_F5 63.165 60.156 1085100 1966300 14928 2068700 2357400 3214700 1701700 2533700 2280800 1964100 1720300 1010500 1835200 121700 2120300 2244800 3188900 1778400 2593400 2275100 1941700 1676900 1 1 1 1 1 1 1 1 1 1 1 1085100 1966300 14928 2068700 2357400 3214700 1701700 2533700 2280800 1964100 1720300 1010500 1835200 121700 2120300 2244800 3188900 1778400 2593400 2275100 1941700 1676900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 257650000 257650000 0 6887 1355 6411 37297 44852 44852 1813;1814 1 GKLPGPTLWASYSLEYGK Unmodified 1966.02 0.020013746 541 P07741;P07741-2 APRT Adenine phosphoribosyltransferase yes no 0 0 0 1 By MS/MS 4 0 1 1 71.748 71.804 3 7.7795E-05 23320 20211116_3431_TMUAki_TMT10x_P_F4 78.516 61.234 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6888 541 6412 37298 44853 44853 1 GKLPIVNEDDELVAIIAR Unmodified 1964.0942 0.094241321 640 P12268 IMPDH2 Inosine-5'-monophosphate dehydrogenase 2 yes yes 0 0 0 1 By MS/MS By MS/MS 4.73 1.6 1 2 2 2 2 2 6 5 76.378 76.358 3 1.4158E-58 24644 20211116_3445_TMUAki_TMT10x_S_F6 255.24 230.27 100750000 174430000 526660 145460000 119750000 160670000 125290000 110720000 106690000 115540000 128990000 93808000 162650000 8280500 150670000 114930000 161620000 126220000 115240000 110150000 112650000 123740000 15 15 8 15 15 15 15 15 15 15 15 47348000 77980000 353930 68605000 44842000 93961000 54592000 52273000 48016000 53002000 57377000 44086000 72728000 3961000 71030000 43246000 93220000 54661000 55273000 49468000 51734000 55060000 7 7 4 7 7 7 7 7 7 7 7 53405000 96445000 172730 76855000 74903000 66712000 70698000 58446000 58676000 62543000 71612000 49722000 89921000 4319400 79636000 71688000 68402000 71560000 59964000 60678000 60914000 68681000 8 8 4 8 8 8 8 8 8 8 8 11209000000 5405100000 5804000000 6889 640 6413 37299;37300;37301;37302;37303;37304;37305;37306;37307;37308;37309 44854;44855;44856;44857;44858;44859;44860;44861;44862;44863;44864;44865;44866;44867;44868 44866 15 GKMSSYAFFVQTCR Oxidation (M) 1696.7701 0.77014677 574;817 P26583;P09429;B2RPK0 HMGB2;HMGB1;HMGB1P1 High mobility group protein B2;High mobility group protein B1;Putative high mobility group protein B1-like 1 no no 0 0 1 1 By MS/MS 3.5 0.5 1 1 2 47.121 47.177 3 0.0001772 13191 20211116_3431_TMUAki_TMT10x_P_F4 86.548 72.885 2494300 5024400 866.13 4199800 7535200 14888000 6389500 14768000 8957800 9294300 7151400 2322400 4685200 273350 4502600 7196000 14505000 6620500 14857000 8936500 9302800 6954600 2 2 1 2 2 2 2 2 2 2 2 2494300 5024400 866.13 4199800 7535200 14888000 6389500 14768000 8957800 9294300 7151400 2322400 4685200 273350 4502600 7196000 14505000 6620500 14857000 8936500 9302800 6954600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 849120000 849120000 0 6890 817;574 6414 37310;37311 44869;44870 44870 545 2 GKNQAFIEMNTEEAANTMVNYYTSVTPVLR 2 Oxidation (M) 3422.6123 0.61225572 818 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 2 1 By MS/MS By matching 7.5 0.5 1 1 1 1 66.014 66.275 4 1.8086E-06 21969 20211116_3435_TMUAki_TMT10x_P_F7 70.647 64.283 1432300 2796400 68995 2619400 1865700 3809500 1926200 2742900 2338000 2567100 2499900 1334100 2608700 189120 2702500 1794600 3783500 1963400 2837400 2366300 2514400 2406500 2 2 2 2 2 2 2 2 2 2 2 1432300 2796400 68995 2619400 1865700 3809500 1926200 2742900 2338000 2567100 2499900 1334100 2608700 189120 2702500 1794600 3783500 1963400 2837400 2366300 2514400 2406500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2074800000 1254700000 820060000 6891 818 6415 37312;37313 44871;44872 44871 974;975 2 GKNQAFIEMNTEEAANTMVNYYTSVTPVLR Oxidation (M) 3406.6173 0.6173411 818 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 1 1 By MS/MS 8 0 1 1 84.447 84.45 4 0.00068932 28209 20211116_3436_TMUAki_TMT10x_P_F8 59.536 52.424 123630 216080 2687.7 189010 126780 257510 163060 127000 140270 143850 182810 115140 201520 12799 195750 122640 255170 162790 136220 145210 139800 175040 1 1 1 1 1 1 1 1 1 1 1 123630 216080 2687.7 189010 126780 257510 163060 127000 140270 143850 182810 115140 201520 12799 195750 122640 255170 162790 136220 145210 139800 175040 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2190000 2190000 0 6892 818 6415 37314 44873 44873 974;975 1 GKPAVAALGDLTDLPTYEHIQTALSSK Unmodified 2795.4705 0.47052416 1559 Q10713;Q10713-2 PMPCA Mitochondrial-processing peptidase subunit alpha yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 76.227 76.179 4 9.259E-42 24675 20211116_3428_TMUAki_TMT10x_P_F1 185.28 177.09 45239000 75938000 374470 71075000 48476000 70820000 54536000 41191000 41051000 42037000 52709000 42124000 70840000 3994200 72848000 46646000 71496000 54584000 43401000 42766000 41021000 50486000 10 10 7 10 10 10 10 10 10 10 10 29232000 48741000 248020 45072000 26749000 52796000 34947000 26730000 27037000 27072000 32793000 27219000 45467000 2601000 46355000 25868000 52723000 34775000 28503000 28056000 26426000 31456000 6 6 5 6 6 6 6 6 6 6 6 16007000 27197000 126450 26004000 21726000 18024000 19589000 14461000 14014000 14965000 19916000 14904000 25374000 1393200 26493000 20778000 18774000 19809000 14898000 14710000 14595000 19030000 4 4 2 4 4 4 4 4 4 4 4 5233700000 2684500000 2549200000 6893 1559 6416 37315;37316;37317;37318 44874;44875;44876;44877;44878;44879;44880;44881;44882;44883 44875 10 GKPDAAK Unmodified 685.37589 0.3758889 574 P09429 HMGB1 High mobility group protein B1 yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 27.772 27.76 3 0.041436 5887 20211116_3433_TMUAki_TMT10x_P_F5 59.35 15.001 1683000 2137600 12206 1380300 964270 1886200 975440 1109300 1040900 981390 1440600 1567200 1991700 140840 1469200 925610 1872900 990870 1163200 1070200 963750 1377300 2 2 2 2 2 2 2 2 2 2 2 1683000 2137600 12206 1380300 964270 1886200 975440 1109300 1040900 981390 1440600 1567200 1991700 140840 1469200 925610 1872900 990870 1163200 1070200 963750 1377300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28452000 28452000 0 6894 574 6417 37319;37320 44884;44885 44885 2 GKPDLNTALPVR Unmodified 1279.7248 0.72483478 454 O95983;O95983-2 MBD3 Methyl-CpG-binding domain protein 3 yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 43.36 43.453 3 0.00018158 11424 20211116_3436_TMUAki_TMT10x_P_F8 90.759 60.774 2453300 3805100 9788.3 4723300 4450700 3727300 2586000 3667600 4039500 3029100 4002900 2284300 3554000 240490 4738800 4221300 3857200 2765600 3712900 4044600 2984700 3862600 2 2 2 2 2 2 2 2 2 2 2 944080 1431300 734.27 1751000 3063400 2542800 1336900 1349400 1487400 1108500 1433200 879040 1336800 108640 1775600 2894000 2514800 1451000 1425000 1504600 1092600 1384200 1 1 1 1 1 1 1 1 1 1 1 1509200 2373700 9054 2972200 1387300 1184500 1249100 2318200 2552200 1920600 2569700 1405300 2217200 131860 2963200 1327300 1342400 1314600 2287900 2540000 1892200 2478400 1 1 1 1 1 1 1 1 1 1 1 175440000 102390000 73042000 6895 454 6418 37321;37322 44886;44887 44886 2 GKPEIVGSNLDTLVSIGLDEKFPQDYR Unmodified 2989.5397 0.53966635 1754 Q15021 NCAPD2 Condensin complex subunit 1 yes yes 0 0 0 2 By MS/MS 7.5 0.5 1 1 2 77.815 77.821 4 2.3273E-08 27370 20211116_3446_TMUAki_TMT10x_S_F7 83.216 76.184 3825800 6494700 10432 4781200 5612200 5310100 4682700 3684300 5351700 4531800 5607500 3562300 6053800 351930 5006500 5358500 5340500 4819200 3853400 5424200 4391100 5401400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3825800 6494700 10432 4781200 5612200 5310100 4682700 3684300 5351700 4531800 5607500 3562300 6053800 351930 5006500 5358500 5340500 4819200 3853400 5424200 4391100 5401400 1 1 1 1 1 1 1 1 1 1 1 2009400000 0 2009400000 6896 1754 6419 37323;37324 44888 44888 1 GKPLALVEEIR Unmodified 1223.7238 0.72377215 2649 Q9BSD7 NTPCR Cancer-related nucleoside-triphosphatase yes yes 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 53.674 53.77 3 0.045363 14988 20211116_3434_TMUAki_TMT10x_P_F6 47.47 31.246 12271000 20238000 146970 22336000 21500000 26144000 17089000 14702000 12808000 13159000 16103000 11426000 18892000 1283500 22696000 20513000 26142000 17432000 15480000 13334000 12915000 15432000 3 3 3 3 3 3 3 3 3 3 3 12271000 20238000 146970 22336000 21500000 26144000 17089000 14702000 12808000 13159000 16103000 11426000 18892000 1283500 22696000 20513000 26142000 17432000 15480000 13334000 12915000 15432000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 341860000 341860000 0 6897 2649 6420 37325;37326 44889;44890;44891;44892 44889 4 GKPLFVR Unmodified 815.50176 0.50175812 1067 P47985;P0C7P4 UQCRFS1;UQCRFS1P1 Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11;Putative cytochrome b-c1 complex subunit Rieske-like protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 36.652 36.502 3 0.019662 8965 20211116_3431_TMUAki_TMT10x_P_F4 76.134 53.243 5724100 9133500 43886 9072800 7463900 7696000 5763800 4239800 4421400 4135000 6394800 5329800 8522300 508960 9239400 7114700 7847400 5893800 4482000 4626700 4042800 6107800 3 3 1 3 3 3 3 3 3 3 3 4435700 7042600 43886 7014800 6138300 6563300 4338000 3228000 3451400 3182500 4918600 4130200 6571400 412840 7151400 5841800 6639100 4466900 3448900 3602100 3110100 4699400 2 2 1 2 2 2 2 2 2 2 2 1288500 2090900 0 2058000 1325600 1132700 1425800 1011800 969960 952480 1476200 1199600 1950900 96119 2088000 1272800 1208300 1426900 1033000 1024700 932680 1408400 1 1 0 1 1 1 1 1 1 1 1 179460000 128900000 50562000 6898 1067 6421 37327;37328;37329 44893;44894;44895 44894 3 GKQGGPTYYIDTNALR Unmodified 1752.8795 0.87949752 459 O96019;O96019-2 ACTL6A Actin-like protein 6A yes no 0 0 0 1 By MS/MS 8 0 1 1 46.551 46.67 3 1.3832E-21 12808 20211116_3436_TMUAki_TMT10x_P_F8 174.87 155.23 2040900 3903800 20346 3027600 5625200 6983500 3939100 4014600 5439200 4109200 3667000 1900200 3639400 211670 3209700 5350800 6803600 4130200 4234400 5405000 4009300 3592300 2 2 1 2 2 2 2 2 2 2 2 2040900 3903800 20346 3027600 5625200 6983500 3939100 4014600 5439200 4109200 3667000 1900200 3639400 211670 3209700 5350800 6803600 4130200 4234400 5405000 4009300 3592300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 236310000 236310000 0 6899 459 6422 37330 44896;44897 44897 2 GKSETILSPPPEK Unmodified 1381.7453 0.74529545 3051 Q9P0M6 H2AFY2 Core histone macro-H2A.2 yes yes 0 0 0 1 By MS/MS 6 0 1 1 39.934 40.097 3 1.0954E-05 9847 20211116_3445_TMUAki_TMT10x_S_F6 92.468 64.819 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6900 3051 6423 37331 44898 44898 1 GKSEVPEDLAGFIELFQTPSHTK Unmodified 2529.2751 0.27511881 1039 P46013;P46013-2 MKI67 Antigen KI-67 yes no 0 0 0 1 By matching By MS/MS 6.33 0.471 2 1 1 2 78.092 78.099 4 0.074573 25341 20211116_3445_TMUAki_TMT10x_S_F6 36.256 28.634 3328300 6356900 12285 5841600 5164100 3821700 4772300 2812800 3103400 3382600 4467100 3099000 5929700 313100 5965600 4942500 3995200 4809500 2927800 3278600 3280200 4267000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3328300 6356900 12285 5841600 5164100 3821700 4772300 2812800 3103400 3382600 4467100 3099000 5929700 313100 5965600 4942500 3995200 4809500 2927800 3278600 3280200 4267000 1 1 1 1 1 1 1 1 1 1 1 2145100000 371160000 1774000000 6901 1039 6424 37332;37333;37334 44899 44899 1 GKTPEEIRK Unmodified 1056.5928 0.59275797 1402 P63208;P63208-2 SKP1 S-phase kinase-associated protein 1 yes no 0 0 0 2 By MS/MS 5 0 1 1 29.939 29.872 4 0.011206 6649 20211116_3433_TMUAki_TMT10x_P_F5 63.283 37.897 363930 605910 3413.1 519730 483250 566260 355420 240160 256730 294890 403030 338880 565050 35024 536990 460350 566670 364150 262270 270690 285750 384260 1 1 1 1 1 1 1 1 1 1 1 363930 605910 3413.1 519730 483250 566260 355420 240160 256730 294890 403030 338880 565050 35024 536990 460350 566670 364150 262270 270690 285750 384260 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15421000 15421000 0 6902 1402 6425 37335 44900 44900 1 GKVCFEMK Unmodified 997.47251 0.47250818 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 1 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 41.93 42.307 3 0.0081868 12524 20211116_3446_TMUAki_TMT10x_S_F7 76.943 49.845 14167000 24180000 210050 20670000 23487000 26971000 14701000 18285000 25477000 17864000 20002000 13192000 22549000 1491500 21429000 22311000 26892000 15704000 19017000 25252000 17464000 19464000 4 4 3 4 4 4 4 4 4 4 4 6611800 10019000 100150 9021100 12615000 21451000 8055400 9505400 14147000 9373500 8602900 6157000 9345500 725580 9459400 11987000 20817000 8597900 10263000 13929000 9160100 8470500 1 1 1 1 1 1 1 1 1 1 1 7555200 14161000 109900 11649000 10872000 5520100 6645200 8779500 11330000 8490400 11399000 7035400 13204000 765930 11969000 10324000 6074800 7106500 8753300 11323000 8304100 10994000 3 3 2 3 3 3 3 3 3 3 3 367700000 145480000 222220000 6903 1474 6426 37336;37337;37338 44901;44902;44903 44901 3 GKVEIDQQQLTQQQLNGN Unmodified 2040.0236 0.023595574 2146 Q8IWS0;Q8IWS0-5;Q8IWS0-3 PHF6 PHD finger protein 6 yes no 0 0 0 1 By MS/MS 5 0 1 1 48.432 48.611 3 0.014264 12989 20211116_3444_TMUAki_TMT10x_S_F5 47.397 31.091 1062300 1660200 0 1868800 825380 867310 849950 1398200 1598400 1160800 1544400 989090 1549900 81890 1876800 791850 957260 884030 1387700 1591400 1143500 1491500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1062300 1660200 0 1868800 825380 867310 849950 1398200 1598400 1160800 1544400 989090 1549900 81890 1876800 791850 957260 884030 1387700 1591400 1143500 1491500 1 1 0 1 1 1 1 1 1 1 1 77487000 0 77487000 6904 2146 6427 37339 44904 44904 1 GKVPITYLELLN Unmodified 1358.781 0.78095267 3262 Q9Y371;Q9Y371-2;Q9Y371-3 SH3GLB1 Endophilin-B1 yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 77.73 77.708 2 0.00738 25477 20211116_3436_TMUAki_TMT10x_P_F8 98.249 57.06 13333000 21927000 76816 20928000 14976000 22591000 16591000 16817000 14708000 15575000 17426000 12415000 20457000 1142000 21445000 14401000 22782000 16686000 17353000 15142000 15263000 16726000 2 2 1 2 2 2 2 2 2 2 2 7472600 11649000 0 9710800 8195500 16342000 9276000 11313000 9713300 9739900 9940600 6957300 10863000 571670 10143000 7881600 16126000 9366100 11709000 9870600 9577300 9582300 1 1 0 1 1 1 1 1 1 1 1 5860600 10278000 76816 11217000 6780800 6248600 7315000 5503900 4994900 5835500 7485400 5457400 9594100 570360 11303000 6519900 6655400 7320200 5643500 5271400 5685600 7143800 1 1 1 1 1 1 1 1 1 1 1 1693500000 1210300000 483160000 6905 3262 6428 37340;37341 44905 44905 1 GKVVIDAFR Unmodified 1003.5815 0.581465 95 O00487 PSMD14 26S proteasome non-ATPase regulatory subunit 14 yes yes 0 0 0 1 By MS/MS 4.5 3.5 1 1 2 44.947 44.822 3 0.0053925 14038 20211116_3439_TMUAki_TMT10x_S_F1 69.672 36.121 1824600 3199800 34855 3129300 2424500 1689100 1868100 2719000 2338700 2233900 2774800 1699200 2985500 192160 3175800 2312800 1832800 1938600 2698000 2374100 2201700 2663300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1824600 3199800 34855 3129300 2424500 1689100 1868100 2719000 2338700 2233900 2774800 1699200 2985500 192160 3175800 2312800 1832800 1938600 2698000 2374100 2201700 2663300 2 2 2 2 2 2 2 2 2 2 2 130000000 0 130000000 6906 95 6429 37342;37343 44906;44907 44906 2 GKYFVTFPYPYMNGR Oxidation (M) 1854.8763 0.8763264 3064 Q9P2J5 LARS Leucine--tRNA ligase, cytoplasmic yes yes 0 0 1 1 By MS/MS 6 0 1 1 61.739 61.731 3 0.012354 18701 20211116_3445_TMUAki_TMT10x_S_F6 55.66 43.495 2613200 4402700 2185.3 3963300 4159300 3195400 3046000 5103100 4282500 4344400 4066800 2433100 4106600 240340 4062800 3960300 3345500 3186100 5069500 4295000 4274200 3929800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2613200 4402700 2185.3 3963300 4159300 3195400 3046000 5103100 4282500 4344400 4066800 2433100 4106600 240340 4062800 3960300 3345500 3186100 5069500 4295000 4274200 3929800 1 1 1 1 1 1 1 1 1 1 1 439990000 0 439990000 6907 3064 6430 37344 44908 44908 3108 1 GKYGQFSGLNPGGRPITPPR Unmodified 2098.1072 0.10720604 1333 P62136;P62136-2;P62136-3 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit yes no 0 0 0 2 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 42.688 42.809 4 9.1441E-32 10848 20211116_3445_TMUAki_TMT10x_S_F6 183.27 171.89 17278000 30426000 196040 33946000 32408000 33029000 20312000 21180000 21951000 19830000 23569000 16088000 28404000 1785800 34368000 30779000 33438000 21286000 22092000 22317000 19422000 22686000 7 7 5 7 7 7 7 7 7 7 7 11885000 20662000 132330 22909000 26891000 28877000 16565000 14580000 15021000 13312000 15830000 11067000 19288000 1277600 23301000 25530000 28729000 17295000 15507000 15378000 13053000 15246000 4 4 2 4 4 4 4 4 4 4 4 5392600 9764000 63710 11037000 5516900 4152200 3746700 6600100 6929800 6518000 7738700 5021500 9115600 508200 11067000 5249200 4709700 3991600 6584500 6939200 6369200 7440200 3 3 3 3 3 3 3 3 3 3 3 2729400000 1814100000 915300000 6908 1333 6431 37345;37346;37347;37348;37349;37350 44909;44910;44911;44912;44913;44914;44915 44915 7 GKYSEVFEAINITNNEK Unmodified 1954.9636 0.96362108 1419 P68400;Q8NEV1 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 3 3 3 3 64.798 65.098 3;4 1.1011E-11 20243 20211116_3436_TMUAki_TMT10x_P_F8 139.12 106.43 50428000 87759000 638010 83407000 64210000 78951000 58244000 60548000 56904000 55763000 65623000 46958000 81872000 4925000 85330000 61454000 80291000 59350000 62347000 58258000 54658000 63034000 10 10 9 10 10 10 10 10 10 10 10 25701000 43780000 388570 42310000 34475000 54934000 32668000 30740000 29863000 29027000 32635000 23932000 40846000 2572300 43456000 33032000 54641000 33145000 32424000 30602000 28420000 31396000 5 5 4 5 5 5 5 5 5 5 5 24728000 43979000 249450 41097000 29735000 24017000 25576000 29809000 27040000 26735000 32988000 23026000 41026000 2352700 41873000 28422000 25651000 26206000 29923000 27656000 26238000 31638000 5 5 5 5 5 5 5 5 5 5 5 5585700000 3049400000 2536300000 6909 1419 6432 37351;37352;37353;37354;37355;37356 44916;44917;44918;44919;44920;44921;44922;44923;44924;44925 44918 10 GKYSEVFEAINITNNER Unmodified 1982.9698 0.96976909 736 P19784 CSNK2A2 Casein kinase II subunit alpha' yes yes 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 62.122 62.707 3 3.6609E-10 18743 20211116_3434_TMUAki_TMT10x_P_F6 117.17 100.49 18357000 32023000 73005 29767000 24156000 31198000 20928000 19070000 17579000 19084000 22034000 17093000 29872000 1656500 30548000 23084000 31421000 21293000 20001000 18188000 18638000 21118000 3 3 2 3 3 3 3 3 3 3 3 13186000 22504000 7130.6 21000000 17519000 25935000 15403000 13549000 12310000 13457000 15305000 12278000 20993000 1145800 21603000 16744000 25839000 15639000 14398000 12765000 13147000 14671000 2 2 1 2 2 2 2 2 2 2 2 5171400 9518800 65874 8767600 6636800 5262200 5525300 5520900 5268800 5627100 6729600 4815500 8879200 510660 8945100 6339700 5582900 5654800 5603400 5423200 5491400 6446600 1 1 1 1 1 1 1 1 1 1 1 1837000000 788330000 1048700000 6910 736 6433 37357;37358;37359 44926;44927;44928;44929 44926 4 GLAAHYFFPR Unmodified 1177.6033 0.60326308 70 O00203;O00203-3 AP3B1 AP-3 complex subunit beta-1 yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 49.573 49.644 3 0.00018669 14630 20211116_3442_TMUAki_TMT10x_S_F4 106.6 87.824 3458900 5465300 43768 6223800 5755800 5640000 3627200 4178000 3508400 3455200 4251800 3220900 5102500 359730 6287000 5468100 5748800 3786900 4300000 3600800 3404300 4078500 2 2 2 2 2 2 2 2 2 2 2 2167000 3238500 24398 3720500 4179300 4298900 2378000 2593100 2197100 2103300 2562100 2017900 3023700 230580 3770200 3963500 4305400 2500700 2707900 2256100 2074400 2460300 1 1 1 1 1 1 1 1 1 1 1 1291900 2226700 19370 2503300 1576500 1341100 1249300 1584900 1311300 1351900 1689700 1203000 2078800 129140 2516800 1504600 1443400 1286200 1592100 1344700 1329900 1618300 1 1 1 1 1 1 1 1 1 1 1 572280000 320460000 251820000 6911 70 6434 37360;37361;37362 44930;44931 44931 2 GLAEVQQDGEAEEGATSDGEK Unmodified 2118.9189 0.91891531 1501 Q02952;Q02952-3;Q02952-2 AKAP12 A-kinase anchor protein 12 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 44.41 44.305 3 6.1302E-83 11722 20211116_3428_TMUAki_TMT10x_P_F1 282.38 267.29 925630 1241800 0 2493400 4328600 3091900 1493200 1981400 2965400 1178000 2190900 861680 1163400 102830 2464300 4077800 3087900 1708500 2046600 2924900 1183600 2137500 2 2 0 2 2 2 2 2 2 2 2 572850 727810 0 1459100 4109700 2838100 1287500 1181600 1750400 668190 1268600 533220 681860 76879 1457500 3868300 2769000 1467900 1269600 1743300 673740 1238600 1 1 0 1 1 1 1 1 1 1 1 352780 513980 0 1034300 218910 253810 205690 799780 1215000 509840 922390 328460 481540 25953 1006700 209470 318980 240580 776930 1181500 509880 898860 1 1 0 1 1 1 1 1 1 1 1 323040000 225560000 97484000 6912 1501 6435 37363;37364 44932;44933 44932 2 GLAGAVSELLR Unmodified 1084.6241 0.6240581 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 70.747 70.854 2 7.5623E-11 22119 20211116_3447_TMUAki_TMT10x_S_F8 163.15 119.38 27414000 48137000 361520 42708000 34067000 42763000 32893000 33681000 31464000 33699000 37786000 25527000 44897000 2685000 43953000 32656000 43356000 33382000 34703000 32296000 32911000 36255000 5 5 4 5 5 5 5 5 5 5 5 12365000 21026000 71899 18557000 14501000 25360000 15174000 14586000 14012000 14031000 16954000 11513000 19610000 1104200 19208000 13925000 25174000 15321000 15357000 14410000 13726000 16264000 2 2 1 2 2 2 2 2 2 2 2 15049000 27111000 289620 24150000 19566000 17402000 17719000 19095000 17452000 19668000 20831000 14014000 25287000 1580800 24746000 18732000 18183000 18061000 19346000 17886000 19186000 19990000 3 3 3 3 3 3 3 3 3 3 3 2906700000 1749300000 1157400000 6913 3293 6436 37365;37366;37367;37368;37369 44934;44935;44936;44937;44938 44938 5 GLAGEIVGEVR Unmodified 1098.6033 0.60332266 2568 Q96TC7 RMDN3 Regulator of microtubule dynamics protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 52.935 52.761 2 6.0556E-07 17184 20211116_3430_TMUAki_TMT10x_P_F3 137.95 41.81 20092000 35221000 196110 35798000 28623000 39540000 26768000 34109000 32806000 31074000 31546000 18709000 32867000 1920200 36535000 27407000 39928000 27436000 34863000 33065000 30473000 30471000 4 4 3 4 4 4 4 4 4 4 4 11708000 19753000 103770 19815000 18531000 29288000 17849000 18314000 18293000 17418000 17772000 10902000 18432000 1115100 20352000 17754000 29006000 18154000 19147000 18572000 17049000 17160000 2 2 1 2 2 2 2 2 2 2 2 8384400 15468000 92336 15982000 10092000 10252000 8919200 15795000 14513000 13656000 13774000 7807400 14435000 805090 16183000 9652900 10922000 9281600 15716000 14493000 13425000 13310000 2 2 2 2 2 2 2 2 2 2 2 1753000000 1059700000 693270000 6914 2568 6437 37370;37371;37372;37373 44939;44940;44941;44942 44940 4 GLAGLGDVAEVR Unmodified 1155.6248 0.62478638 620 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 3 1 54.413 54.239 2 1.0752E-15 17795 20211116_3430_TMUAki_TMT10x_P_F3 175.93 136.39 2737300 4433500 0 4389100 4704400 5740600 3515300 3609700 3218900 3185700 3595700 2548700 4136800 253260 4501000 4480800 5716900 3618700 3765000 3301000 3128800 3457000 1 1 0 1 1 1 1 1 1 1 1 2737300 4433500 0 4389100 4704400 5740600 3515300 3609700 3218900 3185700 3595700 2548700 4136800 253260 4501000 4480800 5716900 3618700 3765000 3301000 3128800 3457000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 392330000 392330000 0 6915 620 6438 37374;37375;37376;37377 44943;44944;44945;44946 44944 4 GLAGLGDVAEVRK Unmodified 1283.7197 0.7197494 620 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 1 By MS/MS 6 0 1 1 49.738 49.888 3 1.8845E-08 13757 20211116_3445_TMUAki_TMT10x_S_F6 112.08 87.292 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6916 620 6439 37378 44947 44947 1 GLAITFVSDENDAK Unmodified 1478.7253 0.72528829 1665;63 O00148;Q13838;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B no no 0 0 0 0 By MS/MS By MS/MS 3.5 1.71 4 4 4 4 4 4 12 12 64.013 63.893 2;3 2.5958E-99 19150 20211116_3434_TMUAki_TMT10x_P_F6 357.53 303.37 334710000 533890000 3164500 521300000 412590000 526180000 395630000 415680000 388350000 393330000 436290000 311660000 498130000 29834000 532770000 395250000 533250000 401970000 427540000 397100000 385070000 419390000 36 36 21 36 36 36 36 36 36 36 36 178190000 273990000 2155000 272110000 214920000 357720000 217050000 214830000 202900000 204260000 226970000 165920000 255650000 16113000 279010000 206180000 355930000 219610000 225320000 207890000 199930000 218210000 18 18 11 18 18 18 18 18 18 18 18 156530000 259900000 1009500 249190000 197670000 168460000 178580000 200850000 185450000 189070000 209320000 145740000 242470000 13721000 253760000 189070000 177320000 182350000 202220000 189210000 185140000 201180000 18 18 10 18 18 18 18 18 18 18 18 46144000000 24240000000 21903000000 6917 63;1665 6440 37379;37380;37381;37382;37383;37384;37385;37386;37387;37388;37389;37390;37391;37392;37393;37394;37395;37396;37397;37398;37399;37400;37401;37402 44948;44949;44950;44951;44952;44953;44954;44955;44956;44957;44958;44959;44960;44961;44962;44963;44964;44965;44966;44967;44968;44969;44970;44971;44972;44973;44974;44975;44976;44977;44978;44979;44980;44981;44982;44983;44984 44966 37 GLALALFGGEPK Unmodified 1171.6601 0.66010926 1114 P49736 MCM2 DNA replication licensing factor MCM2 yes yes 0 0 0 0 By MS/MS By MS/MS 3.73 2.93 4 5 1 1 4 8 7 68.057 68.011 2;3 2.2E-16 25135 20211116_3440_TMUAki_TMT10x_S_F2 204.07 166.34 106460000 171670000 320910 159000000 114230000 149410000 120530000 95867000 97051000 102660000 121820000 99117000 160140000 8453200 162960000 109660000 151590000 121200000 100380000 100640000 99983000 116750000 17 17 4 17 17 17 17 17 17 17 17 54590000 85391000 37818 80844000 52197000 93397000 59231000 49532000 50250000 52953000 61490000 50825000 79662000 4075600 82983000 50199000 93387000 59435000 52677000 51912000 51575000 58970000 9 9 1 9 9 9 9 9 9 9 9 51866000 86282000 283100 78153000 62035000 56009000 61295000 46335000 46801000 49707000 60334000 48292000 80480000 4377600 79972000 59459000 58207000 61764000 47699000 48727000 48408000 57783000 8 8 3 8 8 8 8 8 8 8 8 10095000000 5940900000 4153800000 6918 1114 6441 37403;37404;37405;37406;37407;37408;37409;37410;37411;37412;37413;37414;37415;37416;37417 44985;44986;44987;44988;44989;44990;44991;44992;44993;44994;44995;44996;44997;44998;44999;45000;45001;45002 44997 18 GLAPDLPEDLYHLIK Unmodified 1692.9087 0.90867238 1347 P62277 RPS13 40S ribosomal protein S13 yes yes 0 0 0 0 By MS/MS By MS/MS 5.66 1.97 2 1 2 2 10 4 6 8 24 11 63.533 63.532 3 7.9167E-24 26030 20211116_3431_TMUAki_TMT10x_P_F4 180.97 137.58 334040000 563850000 2991400 584560000 345410000 456870000 409610000 239470000 240010000 278110000 352480000 311030000 526210000 29007000 592980000 332880000 468420000 406880000 255610000 255580000 270020000 336540000 30 30 19 30 30 30 30 30 30 30 30 189650000 315770000 2136000 322540000 178460000 308330000 222020000 139510000 138250000 167550000 192740000 176590000 294670000 16637000 328360000 172280000 311190000 220330000 151200000 146250000 162480000 184240000 22 22 13 22 22 22 22 22 22 22 22 144390000 248080000 855420 262020000 166950000 148530000 187590000 99963000 101760000 110560000 159750000 134440000 231540000 12370000 264620000 160600000 157220000 186550000 104400000 109330000 107540000 152310000 8 8 6 8 8 8 8 8 8 8 8 54039000000 30816000000 23223000000 6919 1347 6442 37418;37419;37420;37421;37422;37423;37424;37425;37426;37427;37428;37429;37430;37431;37432;37433;37434;37435;37436;37437;37438;37439;37440;37441;37442;37443;37444;37445;37446;37447;37448;37449;37450;37451;37452 45003;45004;45005;45006;45007;45008;45009;45010;45011;45012;45013;45014;45015;45016;45017;45018;45019;45020;45021;45022;45023;45024;45025;45026;45027;45028;45029;45030;45031;45032;45033;45034;45035;45036;45037;45038;45039;45040;45041 45006 39 GLAPDLPEDLYHLIKK Unmodified 1821.0036 0.0036354 1347 P62277 RPS13 40S ribosomal protein S13 yes yes 0 0 0 1 By MS/MS By MS/MS 6 2.43 2 2 1 1 2 5 8 15 6 72.468 72.47 3;4 3.2859E-21 25768 20211116_3433_TMUAki_TMT10x_P_F5 164.65 153.14 183550000 299790000 1425000 284700000 200860000 261710000 214110000 176900000 170270000 186740000 204610000 170910000 279680000 16045000 291170000 192970000 266120000 215130000 184430000 176360000 181970000 196320000 22 22 12 22 22 22 22 22 22 22 22 88319000 146090000 728240 135140000 85037000 162890000 102160000 87214000 83942000 92647000 93544000 82234000 136280000 7316100 139050000 81971000 162530000 102170000 92655000 86535000 90260000 89941000 17 17 8 17 17 17 17 17 17 17 17 95235000 153700000 696740 149570000 115820000 98818000 111940000 89682000 86330000 94090000 111070000 88678000 143410000 8728600 152110000 111000000 103590000 112960000 91776000 89824000 91712000 106380000 5 5 4 5 5 5 5 5 5 5 5 55907000000 33266000000 22641000000 6920 1347 6443 37453;37454;37455;37456;37457;37458;37459;37460;37461;37462;37463;37464;37465;37466;37467;37468;37469;37470;37471;37472;37473 45042;45043;45044;45045;45046;45047;45048;45049;45050;45051;45052;45053;45054;45055;45056;45057;45058;45059;45060;45061;45062;45063;45064;45065 45046 24 GLAPEVADR Unmodified 926.48214 0.48214489 637;1106 P49590;P49590-2;P12081;P12081-4;P12081-3;P12081-2 HARS2;HARS Probable histidine--tRNA ligase, mitochondrial;Histidine--tRNA ligase, cytoplasmic no no 0 0 0 0 By MS/MS By MS/MS 2 0.816 1 1 1 1 2 34.847 34.624 2 0.00089813 9370 20211116_3429_TMUAki_TMT10x_P_F2 108.74 52.732 967130 1503600 17144 1673200 1757100 1751100 1207700 926620 999310 868470 1228900 900620 1403600 107220 1696100 1672000 1760600 1247300 982000 1033900 850580 1178400 1 1 1 1 1 1 1 1 1 1 1 967130 1503600 17144 1673200 1757100 1751100 1207700 926620 999310 868470 1228900 900620 1403600 107220 1696100 1672000 1760600 1247300 982000 1033900 850580 1178400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38074000 38074000 0 6921 1106;637 6444 37474;37475;37476 45066;45067;45068 45066 3 GLAPPPPTSASPSLLSNRPPPPARDPPSR Unmodified 2928.557 0.55698817 2290 Q8TF74;Q8TF74-2 WIPF2 WAS/WASL-interacting protein family member 2 yes no 0 0 0 2 By matching By MS/MS 3.33 0.471 2 1 1 2 43.663 43.639 4 4.9839E-06 14591 20211116_3441_TMUAki_TMT10x_S_F3 73.655 63.535 273600 531830 12074 696540 254250 262490 192940 575770 572940 387370 526680 254840 496870 33665 692460 242980 301220 210680 563950 564600 386090 509500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 273600 531830 12074 696540 254250 262490 192940 575770 572940 387370 526680 254840 496870 33665 692460 242980 301220 210680 563950 564600 386090 509500 1 1 1 1 1 1 1 1 1 1 1 308810000 23584000 285230000 6922 2290 6445 37477;37478;37479 45069 45069 1 GLATFCLDK Unmodified 1023.5059 0.5059168 77;172 O00264;O15173;O15173-2 PGRMC1;PGRMC2 Membrane-associated progesterone receptor component 1;Membrane-associated progesterone receptor component 2 no no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 59.456 59.887 2 6.0988E-06 17523 20211116_3434_TMUAki_TMT10x_P_F6 161.92 100.94 23595000 40997000 36786 40858000 40367000 39539000 27535000 29313000 30688000 27255000 33834000 21970000 38254000 2212200 41672000 38385000 40131000 28699000 30258000 31194000 26704000 32541000 3 3 2 3 3 3 3 3 3 3 3 13568000 22069000 29349 22333000 29003000 29865000 17992000 16138000 16630000 15269000 18819000 12633000 20594000 1355200 22878000 27533000 29651000 18783000 17075000 17055000 14949000 18086000 2 2 1 2 2 2 2 2 2 2 2 10028000 18928000 7436.5 18525000 11365000 9674100 9543800 13175000 14059000 11986000 15015000 9337000 17660000 857030 18794000 10852000 10480000 9915600 13183000 14139000 11755000 14455000 1 1 1 1 1 1 1 1 1 1 1 2366100000 1425100000 941070000 6923 77;172 6446 37480;37481;37482;37483 45070;45071;45072;45073 45070 4 GLATSLQNDLQEVPK Unmodified 1611.8468 0.84680041 2177 Q8N0X7 SPG20 Spartin yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 65.454 65.524 3 3.8134E-10 20723 20211116_3431_TMUAki_TMT10x_P_F4 136.17 114.61 4905600 8417400 214890 8083900 5844000 5919700 4976400 5266000 4605900 4766600 5742200 4569200 7853100 620130 8238100 5594700 6149400 5081700 5372200 4742300 4675800 5504100 2 2 2 2 2 2 2 2 2 2 2 1300000 1997500 1315.7 2013900 1466700 2257400 1443600 1136700 1170800 1179800 1481300 1210400 1864000 111340 2057000 1405900 2259500 1457100 1213500 1214000 1150500 1419300 1 1 1 1 1 1 1 1 1 1 1 3605600 6419900 213580 6069900 4377300 3662300 3532800 4129400 3435100 3586700 4260900 3358800 5989100 508790 6181000 4188800 3889900 3624600 4158600 3528200 3525300 4084800 1 1 1 1 1 1 1 1 1 1 1 695660000 304120000 391540000 6924 2177 6447 37484;37485 45074;45075 45074 2 GLATVIR Unmodified 728.45447 0.45447358 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 By MS/MS 4 3 1 1 2 37.302 37.983 2 0.021978 10844 20211116_3446_TMUAki_TMT10x_S_F7 85.89 42.843 795960 1467600 0 1148700 826620 817590 974320 720970 726360 717020 993140 741000 1368200 51423 1189400 795340 851160 972900 737790 759260 700440 949780 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 795960 1467600 0 1148700 826620 817590 974320 720970 726360 717020 993140 741000 1368200 51423 1189400 795340 851160 972900 737790 759260 700440 949780 1 1 0 1 1 1 1 1 1 1 1 27416000 0 27416000 6925 2048 6448 37486;37487 45076;45077 45077 2 GLAVFISDIR Unmodified 1089.6182 0.61824444 400 O94973;O94973-2;O94973-3;O95782;O95782-2 AP2A2;AP2A1 AP-2 complex subunit alpha-2;AP-2 complex subunit alpha-1 yes no 0 0 0 0 By MS/MS 8 0 1 1 73.752 73.594 2 0.028842 23240 20211116_3447_TMUAki_TMT10x_S_F8 64.734 27.088 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6926 400 6449 37488 45078 45078 1 GLAYVEYENESQASQAVMK Oxidation (M) 2131.9732 0.97319949 1753 Q15020;Q15020-4 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 0 0 1 0 By MS/MS By MS/MS 3.5 0.957 1 2 2 1 2 4 57.214 57.079 3 6.6563E-18 19991 20211116_3441_TMUAki_TMT10x_S_F3 152.37 140.31 8262500 14057000 60490 13547000 11150000 17697000 10076000 13407000 13407000 12406000 11966000 7693100 13115000 701580 13918000 10662000 17677000 10380000 13818000 13443000 12158000 11588000 6 6 3 6 6 6 6 6 6 6 6 5796500 9624600 55724 9381000 8481000 15252000 7959700 8967200 8866800 8290200 7980200 5397100 8979900 524070 9675200 8119300 15035000 8129200 9414100 8949300 8124500 7725700 4 4 2 4 4 4 4 4 4 4 4 2466100 4432800 4766.1 4165900 2668800 2445000 2116000 4439600 4540600 4115900 3985600 2295900 4135300 177510 4243000 2543100 2641800 2250300 4403500 4493500 4033100 3861900 2 2 1 2 2 2 2 2 2 2 2 2845000000 1465700000 1379300000 6927 1753 6450 37489;37490;37491;37492;37493;37494 45079;45080;45081;45082;45083;45084;45085;45086 45084 2365 8 GLCAIAQAESLR Unmodified 1287.6605 0.66051996 783 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 0 By MS/MS By MS/MS 5.21 1.15 1 3 4 4 2 7 7 53.653 53.83 2;3 1.4931E-38 15353 20211116_3445_TMUAki_TMT10x_S_F6 285.62 217.6 83872000 136500000 891300 153970000 116290000 127970000 83353000 97036000 79822000 89378000 107620000 78096000 127430000 7709600 155450000 110690000 131280000 86161000 99992000 82346000 87606000 102960000 13 13 9 13 13 13 13 13 13 13 13 42247000 64158000 608840 73576000 77936000 95700000 53825000 46834000 38711000 45084000 52704000 39338000 59902000 4327900 74725000 74144000 95030000 55390000 50032000 40540000 44103000 50408000 6 6 5 6 6 6 6 6 6 6 6 41626000 72339000 282460 80390000 38351000 32270000 29528000 50202000 41110000 44294000 54920000 38757000 67530000 3381700 80723000 36549000 36246000 30772000 49960000 41806000 43503000 52552000 7 7 4 7 7 7 7 7 7 7 7 21277000000 10458000000 10819000000 6928 783 6451 37495;37496;37497;37498;37499;37500;37501;37502;37503;37504;37505;37506;37507;37508 45087;45088;45089;45090;45091;45092;45093;45094;45095;45096;45097;45098;45099 45097 13 GLCESVVEADLVEALEK Unmodified 1859.9186 0.91864472 2310 Q8WVV9;Q8WVV9-5;Q8WVV9-4;Q8WVV9-3;Q8WVV9-2 HNRNPLL Heterogeneous nuclear ribonucleoprotein L-like yes no 0 0 0 0 By MS/MS By MS/MS 1.57 0.495 3 4 2 5 49.424 49.361 3 1.2942E-15 28250 20211116_3439_TMUAki_TMT10x_S_F1 150.39 132.9 9431900 14582000 1784.4 14477000 9722700 12873000 10885000 8459700 6782700 8385500 10950000 8781800 13606000 748980 14753000 9349600 13114000 10853000 8821700 7227600 8192800 10434000 5 5 2 5 5 5 5 5 5 5 5 5245500 7522800 0 7521300 4494900 8215500 5453400 4718100 3643100 4682400 5776900 4883800 7019600 386350 7683400 4331800 8248000 5425500 4972400 3861200 4574600 5506700 2 2 0 2 2 2 2 2 2 2 2 4186400 7059100 1784.4 6956100 5227700 4657800 5431700 3741600 3139600 3703100 5173500 3898000 6586500 362630 7069300 5017800 4866300 5428000 3849300 3366400 3618200 4927700 3 3 2 3 3 3 3 3 3 3 3 2125300000 767640000 1357700000 6929 2310 6452 37509;37510;37511;37512;37513;37514;37515 45100;45101;45102;45103;45104;45105 45102 6 GLCLLEQIDSFKPPQR Unmodified 1899.9877 0.98766776 3291 Q9Y450;Q9Y450-4 HBS1L HBS1-like protein yes no 0 0 0 1 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 75.092 75.057 3 4.6932E-08 26299 20211116_3439_TMUAki_TMT10x_S_F1 106.36 90.721 16940000 28390000 183170 26393000 16891000 24082000 20751000 11225000 9685200 13039000 18152000 15774000 26483000 1535400 27032000 16302000 24387000 20505000 12116000 10638000 12660000 17249000 3 3 2 3 3 3 3 3 3 3 3 11233000 19024000 104680 17590000 9852000 18116000 13009000 7311300 6698300 8530000 11833000 10460000 17746000 970490 18054000 9529700 18180000 12835000 8015400 7272700 8280700 11256000 2 2 1 2 2 2 2 2 2 2 2 5706300 9365800 78486 8803500 7039200 5965400 7742300 3914200 2986900 4509200 6319300 5313700 8737200 564900 8978300 6771900 6206100 7669300 4101000 3365000 4379400 5992800 1 1 1 1 1 1 1 1 1 1 1 800300000 481860000 318450000 6930 3291 6453 37516;37517;37518;37519 45106;45107;45108;45109;45110 45108 5 GLCLYYEDCIEK Unmodified 1561.6793 0.67926607 2590 Q99615;Q99615-2 DNAJC7 DnaJ homolog subfamily C member 7 yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 64.967 64.933 3 9.923E-08 20498 20211116_3431_TMUAki_TMT10x_P_F4 134.2 115.83 10821000 17093000 129320 17782000 12409000 14471000 11668000 11483000 9375100 11032000 13272000 10076000 15952000 969940 18042000 11883000 14879000 11804000 11812000 9776200 10793000 12683000 3 3 2 3 3 3 3 3 3 3 3 4324700 6441300 0 7090300 4890200 8051600 5106900 4392800 3601300 4171600 5159000 4026100 6012800 296500 7201800 4689800 8060900 5122200 4644400 3784900 4083300 4928500 1 1 0 1 1 1 1 1 1 1 1 6496400 10651000 129320 10691000 7518700 6419300 6561500 7090100 5773800 6860200 8113500 6049800 9939100 673440 10840000 7193100 6818100 6681300 7168000 5991300 6709500 7754400 2 2 2 2 2 2 2 2 2 2 2 858920000 477450000 381470000 6931 2590 6454 37520;37521;37522 45111;45112;45113;45114 45111 4 GLDEDETNFLDEVSR Unmodified 1737.7693 0.76933795 2761 Q9GZU8 FAM192A Protein FAM192A yes yes 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 69.606 69.521 2 3.1012E-86 21962 20211116_3428_TMUAki_TMT10x_P_F1 353.96 328.1 6763000 11917000 0 10581000 7547800 9478400 7468300 6038400 6183900 6428900 8415100 6296400 11115000 495960 10872000 7230300 9646700 7539800 6324800 6426400 6262700 8048700 2 2 0 2 2 2 2 2 2 2 2 3346900 5625000 0 5140700 3159200 5941500 3761500 2887500 3040200 2953300 3906700 3116100 5246900 257470 5290600 3043200 5934800 3761700 3092000 3155200 2881700 3741900 1 1 0 1 1 1 1 1 1 1 1 3416100 6291800 0 5440500 4388600 3536900 3706800 3150900 3143700 3475600 4508400 3180300 5867700 238490 5581900 4187100 3711900 3778200 3232800 3271200 3381100 4306800 1 1 0 1 1 1 1 1 1 1 1 3047200000 1811200000 1236000000 6932 2761 6455 37523;37524;37525 45115;45116;45117 45115 3 GLDFALLQK Unmodified 1003.5702 0.57023162 1595 Q13123 IK Protein Red yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 3 1 71.567 71.908 2;3 6.144E-06 24401 20211116_3435_TMUAki_TMT10x_P_F7 163.99 127.79 5692600 8670800 228890 8841500 7934500 14439000 8022500 8861700 8496800 7278500 7868200 5302100 8091400 716670 9091400 7624100 14238000 8147600 9244000 8601000 7173800 7609600 1 1 1 1 1 1 1 1 1 1 1 5692600 8670800 228890 8841500 7934500 14439000 8022500 8861700 8496800 7278500 7868200 5302100 8091400 716670 9091400 7624100 14238000 8147600 9244000 8601000 7173800 7609600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 300540000 300540000 0 6933 1595 6456 37526;37527;37528;37529 45118;45119;45120;45121 45118 4 GLDIPEVDLVIQSSPPK Unmodified 1805.9775 0.97748023 2918 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 78.37 78.346 3 1.0826E-07 25150 20211116_3444_TMUAki_TMT10x_S_F5 107.07 87.334 13674000 22530000 335080 19182000 16510000 17714000 16851000 11582000 11245000 12395000 16703000 12734000 21010000 1412200 19783000 15854000 17999000 16902000 12110000 11879000 12072000 15944000 4 4 3 4 4 4 4 4 4 4 4 4177100 6302000 0 5146800 3668700 6946200 3955100 3245000 3359000 3456900 4951200 3888700 5876200 265700 5359000 3520200 6882200 3978400 3492400 3499800 3367500 4727000 1 1 0 1 1 1 1 1 1 1 1 9497100 16228000 335080 14035000 12841000 10768000 12896000 8337200 7886200 8938100 11752000 8845200 15134000 1146500 14424000 12334000 11116000 12923000 8617300 8379200 8704700 11217000 3 3 3 3 3 3 3 3 3 3 3 2613000000 1389700000 1223400000 6934 2918 6457 37530;37531;37532;37533;37534 45122;45123;45124;45125;45126 45126 5 GLDIPLLDNVINYSFPAK Unmodified 1988.0619 0.06187856 2279 Q8TDD1;Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 82.345 82.352 3 7.0451E-06 27331 20211116_3436_TMUAki_TMT10x_P_F8 85.636 74.366 676740 1174000 18661 1125800 827930 1035700 818700 742540 785980 777270 863380 630250 1095300 75616 1150500 794760 1054100 829910 770800 803780 757700 830470 2 2 2 2 2 2 2 2 2 2 2 315960 538400 4547 525250 320170 602360 365890 330670 355480 336560 389400 294220 502340 30492 537920 308420 602780 368430 350090 363300 328460 374590 1 1 1 1 1 1 1 1 1 1 1 360780 635560 14114 600500 507760 433390 452810 411870 430500 440720 473980 336030 592910 45124 612590 486340 451340 461490 420710 440480 429240 455890 1 1 1 1 1 1 1 1 1 1 1 167260000 133820000 33437000 6935 2279 6458 37535;37536;37537 45127;45128 45127 2 GLDPARVNVPVIGGHAGK Unmodified 1755.9744 0.97440096 989 P40926 MDH2 Malate dehydrogenase, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 46.515 46.467 4 2.6572E-06 12451 20211116_3428_TMUAki_TMT10x_P_F1 98.572 82.688 16439000 26677000 548040 29501000 27331000 31954000 19843000 22005000 20975000 19769000 23403000 15310000 24903000 1992600 29933000 26049000 32178000 20554000 22808000 21375000 19400000 22501000 6 6 5 6 6 6 6 6 6 6 6 11391000 18198000 292920 20170000 23292000 26917000 14997000 15333000 14691000 13660000 15727000 10608000 16988000 1350600 20538000 22141000 26745000 15636000 16124000 14996000 13410000 15139000 4 4 3 4 4 4 4 4 4 4 4 5047400 8478700 255110 9330800 4038700 5037000 4846400 6671700 6284200 6109100 7675900 4701500 7914700 642090 9394600 3908300 5433000 4918200 6684000 6379600 5989700 7361600 2 2 2 2 2 2 2 2 2 2 2 1673200000 1200800000 472310000 6936 989 6459 37538;37539;37540;37541 45129;45130;45131;45132;45133;45134 45129 6 GLDPVEILQER Unmodified 1267.6772 0.67721588 1154 P51532-5;P51532-2;P51532-3;P51532-4;P51532 SMARCA4 Transcription activator BRG1 yes no 0 0 0 0 By MS/MS By MS/MS 2.71 1.03 1 2 2 2 4 3 67.16 66.932 2 5.6814E-14 20958 20211116_3428_TMUAki_TMT10x_P_F1 147.74 116.45 24985000 40068000 254470 38400000 29771000 38683000 28017000 29794000 28482000 29863000 32568000 23264000 37381000 2172000 39296000 28503000 39191000 28525000 30743000 29100000 29163000 31291000 6 6 3 6 6 6 6 6 6 6 6 13940000 21525000 178520 20993000 15984000 26392000 16064000 16091000 15210000 16312000 17808000 12980000 20083000 1214300 21534000 15330000 26322000 16264000 16886000 15603000 15922000 17098000 3 3 1 3 3 3 3 3 3 3 3 11045000 18543000 75948 17407000 13787000 12292000 11953000 13703000 13272000 13551000 14761000 10284000 17298000 957730 17762000 13174000 12869000 12261000 13857000 13497000 13240000 14193000 3 3 2 3 3 3 3 3 3 3 3 4177700000 2011000000 2166700000 6937 1154 6460 37542;37543;37544;37545;37546;37547;37548 45135;45136;45137;45138;45139;45140;45141 45135 7 GLDPYNVLAPK Unmodified 1185.6394 0.63937381 608 P10606 COX5B Cytochrome c oxidase subunit 5B, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 2 4 3 3 63.505 63.877 2;3 1.708E-06 19165 20211116_3434_TMUAki_TMT10x_P_F6 131.62 97.695 31102000 52579000 274650 54383000 37905000 43763000 32674000 32261000 31374000 30612000 38395000 28961000 49068000 2888200 55193000 36228000 44979000 33376000 33332000 32224000 29965000 36821000 6 6 5 6 6 6 6 6 6 6 6 16232000 27467000 15990 28534000 21448000 29205000 19202000 16412000 15816000 15845000 19994000 15113000 25634000 1392100 29044000 20507000 29424000 19490000 17315000 16387000 15498000 19158000 3 3 2 3 3 3 3 3 3 3 3 14870000 25112000 258650 25849000 16458000 14558000 13471000 15849000 15557000 14767000 18401000 13847000 23435000 1496100 26149000 15721000 15556000 13885000 16017000 15837000 14467000 17663000 3 3 3 3 3 3 3 3 3 3 3 3776300000 1871200000 1905100000 6938 608 6461 37549;37550;37551;37552;37553;37554 45142;45143;45144;45145;45146;45147 45142 6 GLDSQLISLKR Unmodified 1228.7139 0.71393574 2169 Q8IZ40 RCOR2 REST corepressor 2 yes yes 0 0 0 1 By MS/MS 1 0 1 1 51.847 51.847 3 6.7705E-07 14790 20211116_3428_TMUAki_TMT10x_P_F1 134.56 109.87 2798700 4050900 117570 4699600 6001600 6810500 3723100 4013300 3390900 3257800 3852000 2606700 3782400 386460 4780100 5704400 6745000 3885300 4199000 3480500 3212900 3701600 1 1 1 1 1 1 1 1 1 1 1 2798700 4050900 117570 4699600 6001600 6810500 3723100 4013300 3390900 3257800 3852000 2606700 3782400 386460 4780100 5704400 6745000 3885300 4199000 3480500 3212900 3701600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 438420000 438420000 0 6939 2169 6462 37555 45148 45148 1 GLDVDSLVIEHIQVNK Unmodified 1777.9574 0.95741349 721 P18621;P18621-3;P18621-2 RPL17 60S ribosomal protein L17 yes no 0 0 0 0 By MS/MS By MS/MS 4.85 1.53 2 2 4 4 5 3 11 9 71.172 71.157 3;4 4.0795E-48 22154 20211116_3444_TMUAki_TMT10x_S_F5 256.81 237.57 175800000 286060000 2570600 279070000 180190000 245160000 198920000 150940000 151250000 168270000 205350000 163700000 266900000 15876000 284680000 173350000 249720000 199310000 158740000 157870000 163620000 196420000 36 36 24 36 36 36 36 36 36 36 36 98086000 155090000 1682100 151030000 97969000 171990000 110460000 85747000 85037000 94047000 112040000 91336000 144700000 9245700 154680000 94323000 171980000 110610000 91783000 88581000 91509000 107240000 19 19 13 19 19 19 19 19 19 19 19 77711000 130970000 888470 128040000 82220000 73165000 88455000 65192000 66211000 74221000 93316000 72361000 122200000 6629800 130010000 79026000 77741000 88709000 66955000 69294000 72116000 89179000 17 17 11 17 17 17 17 17 17 17 17 41173000000 21351000000 19822000000 6940 721 6463 37556;37557;37558;37559;37560;37561;37562;37563;37564;37565;37566;37567;37568;37569;37570;37571;37572;37573;37574;37575 45149;45150;45151;45152;45153;45154;45155;45156;45157;45158;45159;45160;45161;45162;45163;45164;45165;45166;45167;45168;45169;45170;45171;45172;45173;45174;45175;45176;45177;45178;45179;45180;45181;45182;45183;45184;45185 45179 37 GLDVDSLVIEHIQVNKAPK Unmodified 2074.1423 0.14225415 721 P18621;P18621-3;P18621-2 RPL17 60S ribosomal protein L17 yes no 0 0 0 1 By MS/MS By MS/MS 7.17 0.687 1 3 2 4 2 64.652 64.895 3;4 2.2521E-42 20162 20211116_3436_TMUAki_TMT10x_P_F8 218.43 196.56 46464000 81467000 86718 54845000 74512000 128650000 67137000 107270000 103520000 90857000 78943000 43262000 75918000 2683300 58935000 71249000 126030000 69612000 109650000 102850000 89412000 76914000 6 6 2 6 6 6 6 6 6 6 6 31819000 54158000 64774 38261000 49727000 109210000 52261000 73527000 71778000 63430000 52862000 29625000 50476000 1322900 41217000 47733000 106080000 53483000 76256000 71497000 62365000 51580000 4 4 1 4 4 4 4 4 4 4 4 14645000 27309000 21944 16584000 24784000 19439000 14875000 33741000 31738000 27428000 26081000 13636000 25442000 1360500 17718000 23515000 19949000 16129000 33395000 31350000 27047000 25335000 2 2 1 2 2 2 2 2 2 2 2 11348000000 6023200000 5324800000 6941 721 6464 37576;37577;37578;37579;37580;37581 45186;45187;45188;45189;45190;45191;45192 45189 7 GLDVEDVK Unmodified 873.44436 0.4443624 710;2368 P17844;P17844-2;Q92841;Q92841-3;Q92841-1 DDX5;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 no no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 46.748 46.695 2 0.00094438 14630 20211116_3430_TMUAki_TMT10x_P_F3 131.06 92.824 5753700 9181800 24471 9662300 8412000 7475600 6534100 5301000 5581300 5065100 7480700 5357200 8569400 499600 9790500 8017700 7701700 6696600 5492300 5787100 4956500 7157500 2 2 1 2 2 2 2 2 2 2 2 2828600 4133800 0 4566800 5362200 4703400 3333300 2571000 2559700 2218000 3392900 2633400 3858900 232540 4630400 5088100 4735100 3463300 2711000 2667500 2180800 3247200 1 1 0 1 1 1 1 1 1 1 1 2925100 5048000 24471 5095500 3049800 2772200 3200800 2730000 3021600 2847000 4087800 2723800 4710500 267070 5160200 2929600 2966500 3233300 2781300 3119600 2775700 3910400 1 1 1 1 1 1 1 1 1 1 1 487300000 258250000 229050000 6942 710;2368 6465 37582;37583;37584 45193;45194 45193 2 GLDWVKEEAPDILCLQETK Unmodified 2243.1144 0.11438442 829 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 5.25 0.829 1 1 2 2 2 77.967 77.964 3 2.818E-12 24925 20211116_3434_TMUAki_TMT10x_P_F6 130 110.44 29493000 51703000 122210 49881000 32924000 37969000 41421000 18056000 14661000 21323000 35198000 27461000 48237000 1934300 50837000 31781000 38968000 40742000 19461000 16815000 20691000 33318000 5 5 2 5 5 5 5 5 5 5 5 13526000 22146000 122210 22821000 15398000 21499000 19908000 8357600 6543000 9933100 15419000 12595000 20667000 1261500 23214000 14885000 21688000 19544000 9207800 7556200 9636300 14599000 2 2 2 2 2 2 2 2 2 2 2 15967000 29556000 0 27060000 17526000 16471000 21513000 9698400 8118100 11390000 19779000 14866000 27570000 672720 27623000 16896000 17280000 21198000 10253000 9258700 11055000 18719000 3 3 0 3 3 3 3 3 3 3 3 4508500000 2337700000 2170800000 6943 829 6466 37585;37586;37587;37588 45195;45196;45197;45198;45199 45196 5 GLEAALVYVENAHVAGK Unmodified 1739.9206 0.92063405 1672 Q14008;Q14008-2;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 74.167 74.213 3 2.2731E-08 25269 20211116_3435_TMUAki_TMT10x_P_F7 118.55 97.296 41923000 71524000 1072400 62203000 50234000 65735000 51833000 46576000 43274000 48064000 53729000 39042000 66704000 4565500 64168000 48270000 66318000 52228000 48367000 44769000 46881000 51506000 7 7 6 7 7 7 7 7 7 7 7 18734000 31127000 537980 26846000 21077000 40123000 25400000 22340000 20994000 22671000 23252000 17447000 29029000 2087400 27889000 20351000 39656000 25402000 23621000 21631000 22128000 22360000 3 3 3 3 3 3 3 3 3 3 3 23189000 40396000 534410 35356000 29156000 25612000 26433000 24236000 22280000 25393000 30477000 21595000 37675000 2478100 36280000 27919000 26662000 26826000 24746000 23139000 24752000 29146000 4 4 3 4 4 4 4 4 4 4 4 3654800000 1903200000 1751500000 6944 1672 6467 37589;37590;37591;37592;37593;37594 45200;45201;45202;45203;45204;45205;45206 45201 7 GLEDPSQVVR Unmodified 1098.5669 0.56693715 2289 Q8TEX9;Q8TEX9-2 IPO4 Importin-4 yes no 0 0 0 0 By MS/MS 3 0 1 1 38.363 38.405 2 0.032948 11295 20211116_3430_TMUAki_TMT10x_P_F3 59.052 43.613 132940 197950 4708.4 236310 352190 262700 165150 122680 134450 119280 161220 123820 184850 18481 238760 333280 262850 176350 131700 139070 116630 154690 1 1 1 1 1 1 1 1 1 1 1 132940 197950 4708.4 236310 352190 262700 165150 122680 134450 119280 161220 123820 184850 18481 238760 333280 262850 176350 131700 139070 116630 154690 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9211200 9211200 0 6945 2289 6468 37595 45207 45207 1 GLEEITVHNKDEVYQILEK Unmodified 2256.1638 0.16377745 1184 P52732 KIF11 Kinesin-like protein KIF11 yes yes 0 0 0 1 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 70.178 70.191 4 8.4404E-18 21740 20211116_3434_TMUAki_TMT10x_P_F6 154.48 138.72 18673000 30659000 106970 29615000 20115000 31650000 20748000 20897000 21073000 21093000 22474000 17386000 28604000 1577600 30316000 19304000 31876000 21022000 21796000 21474000 20592000 21636000 4 4 2 4 4 4 4 4 4 4 4 14015000 23367000 106970 22043000 14735000 26541000 16109000 15771000 15919000 15712000 16733000 13050000 21799000 1227700 22648000 14167000 26519000 16262000 16577000 16232000 15347000 16116000 3 3 2 3 3 3 3 3 3 3 3 4657600 7291700 0 7572300 5380100 5109400 4638800 5126100 5154000 5381200 5741000 4336400 6805000 349940 7668400 5137000 5357400 4760100 5218700 5241600 5245100 5520000 1 1 0 1 1 1 1 1 1 1 1 1742500000 1170600000 571900000 6946 1184 6469 37596;37597;37598 45208;45209;45210;45211 45210 4 GLEEPEMDPK Oxidation (M) 1159.5067 0.50670466 1874 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 1 0 By MS/MS 2 0 1 1 35.034 35.128 3 0.068521 8212 20211116_3440_TMUAki_TMT10x_S_F2 44.765 29.792 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6947 1874 6470 37599 45212 45212 2491 1 GLEETVAK Unmodified 845.44945 0.44944778 906 P33176 KIF5B Kinesin-1 heavy chain yes yes 0 0 0 0 By MS/MS 4 0 1 1 36.836 36.968 2 0.065751 9632 20211116_3442_TMUAki_TMT10x_S_F4 55.503 3.6388 297190 445740 81206 484810 385900 463390 532100 540870 504500 487580 592530 277320 416070 101560 491500 378610 475130 531230 544420 517570 478390 568860 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 297190 445740 81206 484810 385900 463390 532100 540870 504500 487580 592530 277320 416070 101560 491500 378610 475130 531230 544420 517570 478390 568860 1 1 1 1 1 1 1 1 1 1 1 3893400 0 3893400 6948 906 6471 37600 45213 45213 1 GLEGERPAR Unmodified 983.51484 0.514842 1056 P46783 RPS10 40S ribosomal protein S10 yes yes 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 24.497 24.343 3 3.354E-06 7345 20211116_3441_TMUAki_TMT10x_S_F3 172.25 132.23 632340 1033800 26234 911850 689090 900820 749080 638400 611940 555340 728730 588960 964170 77669 938680 663830 912470 752440 659840 632690 545790 699360 2 2 2 2 2 2 2 2 2 2 2 410780 659840 23832 610650 456510 708870 491710 485710 430200 404240 489810 382660 615520 56908 627910 440050 711080 495020 502660 442470 398150 470660 1 1 1 1 1 1 1 1 1 1 1 221550 373940 2402 301190 232580 191950 257360 152690 181740 151100 238910 206310 348650 20761 310770 223780 201400 257420 157180 190220 147640 228700 1 1 1 1 1 1 1 1 1 1 1 97584000 35562000 62022000 6949 1056 6472 37601;37602;37603 45214;45215 45215 2 GLEHPLFPK Unmodified 1036.5706 0.57056597 305 O75044 SRGAP2 SLIT-ROBO Rho GTPase-activating protein 2 yes yes 0 0 0 0 By MS/MS 7 0 1 1 44.855 45.38 3 0.0022466 13988 20211116_3446_TMUAki_TMT10x_S_F7 76.827 48.658 856660 1362900 22076 1640600 765220 845410 668730 1295400 1257200 1156700 1308100 797800 1272800 90316 1642200 732640 920410 701580 1290200 1255000 1135400 1260300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 856660 1362900 22076 1640600 765220 845410 668730 1295400 1257200 1156700 1308100 797800 1272800 90316 1642200 732640 920410 701580 1290200 1255000 1135400 1260300 1 1 1 1 1 1 1 1 1 1 1 55069000 0 55069000 6950 305 6473 37604 45216 45216 1 GLEHVTVDDLVAEITPK Unmodified 1834.9676 0.96764382 2887 Q9NPA8;Q9NPA8-2 ENY2 Transcription and mRNA export factor ENY2 yes no 0 0 0 0 By MS/MS By MS/MS 3.94 1.35 3 4 4 3 3 9 8 76.292 76.237 3;4 1.5609E-21 27790 20211116_3441_TMUAki_TMT10x_S_F3 166.09 146.25 42639000 69200000 489360 65666000 46131000 57739000 47463000 36715000 36721000 39442000 48561000 39704000 64558000 3959300 67122000 44290000 58837000 47741000 38472000 38248000 38409000 46479000 17 17 12 17 17 17 17 17 17 17 17 20542000 32048000 218690 31177000 18646000 33821000 22754000 17217000 17111000 18210000 22639000 19128000 29901000 1880400 31907000 17995000 33918000 22691000 18373000 17850000 17744000 21668000 8 8 8 8 8 8 8 8 8 8 8 22096000 37153000 270670 34489000 27484000 23918000 24709000 19497000 19610000 21232000 25923000 20575000 34658000 2079000 35215000 26295000 24919000 25051000 20098000 20397000 20665000 24811000 9 9 4 9 9 9 9 9 9 9 9 9231800000 4113500000 5118300000 6951 2887 6474 37605;37606;37607;37608;37609;37610;37611;37612;37613;37614;37615;37616;37617;37618;37619;37620;37621 45217;45218;45219;45220;45221;45222;45223;45224;45225;45226;45227;45228;45229;45230;45231;45232;45233;45234 45226 18 GLEISGTFTHR Unmodified 1216.62 0.62003536 1391 P63010;P63010-2;P63010-3 AP2B1 AP-2 complex subunit beta yes no 0 0 0 0 By MS/MS 6 0.816 1 1 1 3 40.178 40.341 3 1.7303E-07 9925 20211116_3445_TMUAki_TMT10x_S_F6 138.76 114.42 539970 798590 5556.1 902230 518670 413650 470230 637550 641880 583070 751870 502810 745550 49647 905800 496450 456560 484820 635290 649400 571700 721900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 539970 798590 5556.1 902230 518670 413650 470230 637550 641880 583070 751870 502810 745550 49647 905800 496450 456560 484820 635290 649400 571700 721900 1 1 1 1 1 1 1 1 1 1 1 115890000 0 115890000 6952 1391 6475 37622;37623;37624 45235;45236;45237 45236 3 GLEISGTFTR Unmodified 1079.5611 0.56112349 1557 Q10567;Q10567-3;Q10567-2 AP1B1 AP-1 complex subunit beta-1 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 49.589 49.76 2 0.061074 13372 20211116_3444_TMUAki_TMT10x_S_F5 53.317 31.169 8212300 12271000 3005.2 13637000 10237000 12546000 8635700 9631500 9144500 8682100 10455000 7646100 11455000 662360 13799000 9772100 12783000 8859000 9911300 9327200 8518500 10045000 2 2 1 2 2 2 2 2 2 2 2 5358100 7839500 0 8650700 7773500 10129000 6047400 6247800 6038300 5742600 6827800 4988500 7318100 428400 8790000 7407000 10141000 6224100 6533100 6171300 5629300 6562100 1 1 0 1 1 1 1 1 1 1 1 2854200 4431200 3005.2 4986300 2463100 2416800 2588300 3383700 3106200 2939500 3627700 2657600 4136900 233960 5009200 2365100 2642300 2634900 3378200 3155900 2889100 3483300 1 1 1 1 1 1 1 1 1 1 1 1042600000 430260000 612370000 6953 1557 6476 37625;37626 45238 45238 1 GLELIASENFCSR Unmodified 1494.7137 0.71367774 915 P34897;P34897-3;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4.38 1 3 4 4 2 7 6 63.674 63.725 2;3 8.1814E-65 20455 20211116_3442_TMUAki_TMT10x_S_F4 318.81 282.86 34148000 57238000 194060 55253000 45831000 51223000 43702000 35193000 31488000 34876000 43559000 31796000 53402000 3051700 56447000 43895000 52071000 44062000 36581000 32996000 34075000 41646000 10 10 6 10 10 10 10 10 10 10 10 14789000 24009000 83642 23669000 17600000 28119000 17710000 15271000 13850000 15119000 18765000 13771000 22402000 1324000 24237000 16882000 28082000 17839000 16170000 14434000 14772000 17950000 5 5 4 5 5 5 5 5 5 5 5 19359000 33229000 110420 31584000 28231000 23104000 25991000 19922000 17637000 19758000 24794000 18025000 31000000 1727700 32210000 27013000 23989000 26223000 20411000 18563000 19303000 23696000 5 5 2 5 5 5 5 5 5 5 5 8473700000 4292900000 4180900000 6954 915 6477 37627;37628;37629;37630;37631;37632;37633;37634;37635;37636;37637;37638;37639 45239;45240;45241;45242;45243;45244;45245;45246;45247;45248;45249;45250;45251;45252 45248 14 GLELLAASEAPRDPPGQAKPR Unmodified 2172.1651 0.16511485 2122 Q86WX3 RPS19BP1 Active regulator of SIRT1 yes yes 0 0 0 2 By MS/MS 7 0 1 1 47.068 47.559 4 4.3125E-14 14859 20211116_3446_TMUAki_TMT10x_S_F7 136.46 112.18 1803200 3242500 2752.4 3467800 1683800 1708700 1447800 3137700 2816800 2395900 2724400 1679000 3026400 150390 3495500 1608800 1881300 1523300 3095900 2802400 2370500 2631000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1803200 3242500 2752.4 3467800 1683800 1708700 1447800 3137700 2816800 2395900 2724400 1679000 3026400 150390 3495500 1608800 1881300 1523300 3095900 2802400 2370500 2631000 1 1 1 1 1 1 1 1 1 1 1 330780000 0 330780000 6955 2122 6478 37640 45253 45253 1 GLENPLPERPR Unmodified 1276.6888 0.68878362 1198 P53350 PLK1 Serine/threonine-protein kinase PLK1 yes yes 0 0 0 1 By MS/MS By matching 4.67 0.471 1 2 2 1 34.952 35.007 3 0.0042672 8464 20211116_3431_TMUAki_TMT10x_P_F4 66.486 39.774 1332200 1871800 59878 2162900 2475900 2449700 1542700 1275800 1363800 1203100 1787200 1240900 1747700 182270 2190300 2354200 2451500 1608100 1354200 1410300 1178000 1710900 1 1 1 1 1 1 1 1 1 1 1 1332200 1871800 59878 2162900 2475900 2449700 1542700 1275800 1363800 1203100 1787200 1240900 1747700 182270 2190300 2354200 2451500 1608100 1354200 1410300 1178000 1710900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 189000000 113060000 75936000 6956 1198 6479 37641;37642;37643 45254 45254 1 GLEPCAISIEVLGAR Unmodified 1583.8341 0.83412723 728 P19174-2;P19174 PLCG1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 yes no 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 72.994 72.957 2;3 2.0864E-27 22928 20211116_3444_TMUAki_TMT10x_S_F5 174.05 117.5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6957 728 6480 37644;37645 45255;45256 45255 2 GLESDVAELR Unmodified 1087.551 0.55095274 1505 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 46.989 46.835 2 1.8815E-09 12709 20211116_3428_TMUAki_TMT10x_P_F1 182.98 87.364 28009000 46245000 694680 50159000 52738000 60553000 37634000 44401000 45357000 40679000 42317000 26083000 43166000 3130800 51049000 50218000 60684000 39203000 45848000 45697000 39883000 40916000 7 7 5 7 7 7 7 7 7 7 7 19278000 30864000 231150 33987000 44696000 52902000 29577000 31145000 32417000 28852000 29043000 17950000 28811000 1984500 34734000 42478000 52237000 30880000 32695000 32735000 28273000 28121000 4 4 2 4 4 4 4 4 4 4 4 8731400 15382000 463530 16172000 8042300 7651400 8056500 13256000 12940000 11827000 13275000 8133300 14356000 1146200 16315000 7739700 8446200 8322500 13152000 12962000 11610000 12795000 3 3 3 3 3 3 3 3 3 3 3 2671400000 1602100000 1069300000 6958 1505 6481 37646;37647;37648;37649;37650;37651 45257;45258;45259;45260;45261;45262;45263 45257 7 GLESLPPLRPQQNPVLPVAGER Unmodified 2366.307 0.30702806 1254 P56192;P56192-2 MARS Methionine--tRNA ligase, cytoplasmic yes no 0 0 0 1 By MS/MS By MS/MS 6.71 2.37 1 2 4 3 4 60.949 61.136 3;4 2.6125E-68 20612 20211116_3439_TMUAki_TMT10x_S_F1 251.13 218.43 50525000 87098000 671790 79794000 64445000 84048000 63027000 72320000 70092000 72332000 72062000 47045000 81244000 4466300 81982000 61762000 85097000 64224000 74123000 71068000 70643000 69455000 14 14 7 14 14 14 14 14 14 14 14 23188000 38584000 329290 34515000 29622000 52418000 31160000 31955000 31041000 32173000 31816000 21590000 35988000 2033900 35766000 28443000 51836000 31522000 33529000 31611000 31413000 30668000 6 6 4 6 6 6 6 6 6 6 6 27338000 48513000 342510 45279000 34823000 31630000 31867000 40366000 39052000 40160000 40247000 25455000 45256000 2432500 46216000 33320000 33261000 32701000 40594000 39456000 39231000 38787000 8 8 3 8 8 8 8 8 8 8 8 15919000000 7587200000 8331400000 6959 1254 6482 37652;37653;37654;37655;37656;37657;37658 45264;45265;45266;45267;45268;45269;45270;45271;45272;45273;45274;45275;45276;45277 45271 14 GLEVTAYSPLGSSDR Unmodified 1550.7577 0.75765105 669 P14550 AKR1A1 Alcohol dehydrogenase [NADP(+)] yes yes 0 0 0 0 By MS/MS By MS/MS 4.25 0.661 1 4 3 4 4 56.886 56.93 2;3 3.4027E-51 17174 20211116_3431_TMUAki_TMT10x_P_F4 283.19 217.85 20435000 32319000 76003 35078000 29368000 35051000 22780000 27784000 25861000 25170000 27121000 19026000 30167000 1682100 35590000 27985000 35546000 23547000 28537000 26219000 24690000 26124000 7 7 2 7 7 7 7 7 7 7 7 12333000 19100000 41817 20502000 20674000 27548000 15672000 16090000 15229000 14738000 16150000 11483000 17827000 1070700 20922000 19693000 27372000 16145000 16897000 15545000 14449000 15551000 4 4 1 4 4 4 4 4 4 4 4 8101700 13219000 34186 14576000 8694400 7503600 7108000 11693000 10631000 10433000 10971000 7542900 12340000 611400 14668000 8292200 8174600 7402000 11640000 10673000 10241000 10573000 3 3 1 3 3 3 3 3 3 3 3 4744600000 2769700000 1974900000 6960 669 6483 37659;37660;37661;37662;37663;37664;37665;37666 45278;45279;45280;45281;45282;45283;45284;45285 45278 8 GLEVTDDSPK Unmodified 1059.5084 0.50841922 1104 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS 3 0 2 2 39.133 39.176 2;3 1.4117E-08 11552 20211116_3430_TMUAki_TMT10x_P_F3 126.31 96.937 149320 215160 6114.3 253550 277260 288110 199600 150450 159480 150600 190950 139070 200910 19870 256470 264260 288280 205280 159920 165110 147070 183230 1 1 1 1 1 1 1 1 1 1 1 149320 215160 6114.3 253550 277260 288110 199600 150450 159480 150600 190950 139070 200910 19870 256470 264260 288280 205280 159920 165110 147070 183230 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11313000 11313000 0 6961 1104 6484 37667;37668 45286;45287 45287 2 GLEYLYLNVHDEDRDDQTR Unmodified 2350.0826 0.082567016 3350 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 3 4 53.619 53.446 4 3.3996E-13 16962 20211116_3429_TMUAki_TMT10x_P_F2 139.9 126.07 22177000 37746000 776440 40257000 33994000 41514000 26920000 29582000 27317000 26519000 31976000 20655000 35230000 2697400 40910000 32462000 41946000 27689000 30587000 27938000 26026000 30701000 10 10 8 10 10 10 10 10 10 10 10 14849000 25049000 373730 26011000 26631000 35394000 20951000 20343000 19015000 18122000 21350000 13829000 23377000 1714100 26608000 25413000 35140000 21489000 21376000 19512000 17791000 20524000 6 6 4 6 6 6 6 6 6 6 6 7328100 12697000 402710 14246000 7363000 6119400 5968900 9239100 8302500 8396400 10625000 6826100 11853000 983350 14302000 7049400 6805400 6199600 9211000 8426600 8235100 10178000 4 4 4 4 4 4 4 4 4 4 4 2615100000 1316600000 1298400000 6962 3350 6485 37669;37670;37671;37672;37673;37674;37675 45288;45289;45290;45291;45292;45293;45294;45295;45296;45297 45290 10 GLFDEYGSK Unmodified 1014.4658 0.46582612 672 P14625;Q58FF3 HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein yes no 0 0 0 0 By MS/MS By MS/MS 4.5 1.12 2 2 2 2 4 4 53.901 53.984 2 1.1288E-05 15995 20211116_3431_TMUAki_TMT10x_P_F4 159.11 130.6 66295000 97027000 297860 139360000 144570000 123990000 76403000 91825000 103160000 78353000 99592000 61727000 90695000 6476300 138950000 136900000 126530000 81892000 94581000 103650000 77078000 96183000 8 8 3 8 8 8 8 8 8 8 8 41791000 60787000 185700 88789000 126700000 109500000 61371000 60899000 68249000 51796000 64154000 38910000 56826000 4486500 88911000 119830000 109180000 65880000 64098000 68985000 50962000 62014000 5 5 1 5 5 5 5 5 5 5 5 24504000 36240000 112160 50571000 17870000 14489000 15032000 30927000 34908000 26557000 35438000 22816000 33870000 1989900 50039000 17067000 17356000 16011000 30484000 34662000 26117000 34169000 3 3 2 3 3 3 3 3 3 3 3 5600200000 3506800000 2093400000 6963 672 6486 37676;37677;37678;37679;37680;37681;37682;37683 45298;45299;45300;45301;45302;45303;45304;45305;45306 45300 9 GLFEVNPWKR Unmodified 1244.6666 0.66659162 2878 Q9HDC9;Q9HDC9-2 APMAP Adipocyte plasma membrane-associated protein yes no 0 0 0 1 By MS/MS By matching 4 0 2 1 1 59.061 59.079 3 0.048124 18080 20211116_3431_TMUAki_TMT10x_P_F4 48.442 27.602 5180900 7439800 81443 7955800 8350500 10561000 6820800 4619200 4056500 4258400 6364000 4824500 6944000 549820 8118700 7973300 10465000 6913000 4985600 4329600 4173800 6067700 1 1 1 1 1 1 1 1 1 1 1 5180900 7439800 81443 7955800 8350500 10561000 6820800 4619200 4056500 4258400 6364000 4824500 6944000 549820 8118700 7973300 10465000 6913000 4985600 4329600 4173800 6067700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 620920000 329330000 291590000 6964 2878 6487 37684;37685 45307 45307 1 GLFIIDDK Unmodified 919.50148 0.50148335 1533;1605 Q06830;Q13162 PRDX1;PRDX4 Peroxiredoxin-1;Peroxiredoxin-4 no no 0 0 0 0 By MS/MS By MS/MS 6.13 1.48 2 2 2 2 9 14 43 2 32 44 32.307 32.375 2 0.00041897 20647 20211116_3428_TMUAki_TMT10x_P_F1 143.85 96.784 570650000 891820000 2922300 1049900000 646770000 739340000 567530000 568690000 583170000 582680000 692020000 531330000 832760000 47911000 1055200000 618130000 768510000 580290000 587230000 596460000 568500000 664200000 65 65 26 65 65 65 65 65 65 65 65 217820000 324950000 2089500 373700000 305870000 413150000 218430000 212060000 223740000 218150000 263670000 202830000 303390000 20651000 378380000 291180000 413940000 226300000 225940000 228810000 212810000 253120000 29 29 15 29 29 29 29 29 29 29 29 352830000 566870000 832800 676160000 340900000 326190000 349090000 356630000 359430000 364530000 428350000 328500000 529360000 27261000 676840000 326960000 354570000 353990000 361290000 367650000 355700000 411080000 36 36 11 36 36 36 36 36 36 36 36 88922000000 47516000000 41406000000 6965 1533;1605 6488 37686;37687;37688;37689;37690;37691;37692;37693;37694;37695;37696;37697;37698;37699;37700;37701;37702;37703;37704;37705;37706;37707;37708;37709;37710;37711;37712;37713;37714;37715;37716;37717;37718;37719;37720;37721;37722;37723;37724;37725;37726;37727;37728;37729;37730;37731;37732;37733;37734;37735;37736;37737;37738;37739;37740;37741;37742;37743;37744;37745;37746;37747;37748;37749;37750;37751;37752;37753;37754;37755;37756;37757;37758;37759;37760;37761 45308;45309;45310;45311;45312;45313;45314;45315;45316;45317;45318;45319;45320;45321;45322;45323;45324;45325;45326;45327;45328;45329;45330;45331;45332;45333;45334;45335;45336;45337;45338;45339;45340;45341;45342;45343;45344;45345;45346;45347;45348;45349;45350;45351;45352;45353;45354;45355;45356;45357;45358;45359;45360;45361;45362;45363;45364;45365;45366;45367;45368;45369;45370;45371;45372;45373;45374;45375;45376;45377;45378;45379;45380;45381;45382;45383;45384;45385 45308 78 GLFIIDDKGILR Unmodified 1358.7922 0.79218606 1533;1605 Q06830;Q13162 PRDX1;PRDX4 Peroxiredoxin-1;Peroxiredoxin-4 no no 0 0 0 1 By MS/MS By MS/MS 5.08 2.78 5 3 1 3 2 3 8 11 14 70.403 70.416 2;3 2.3773E-16 23984 20211116_3439_TMUAki_TMT10x_S_F1 218.49 164.34 299730000 536910000 1428700 323040000 514560000 679810000 414750000 644480000 480810000 524360000 473820000 279070000 500200000 27117000 350000000 490830000 669740000 427960000 653450000 486000000 517060000 457290000 25 25 12 25 25 25 25 25 25 25 25 159910000 277480000 827200 171760000 206520000 444440000 226910000 351600000 250380000 268110000 231650000 148890000 258520000 13022000 186770000 198470000 433860000 229830000 359660000 253020000 265290000 224040000 14 14 7 14 14 14 14 14 14 14 14 139820000 259430000 601480 151280000 308040000 235370000 187840000 292890000 230430000 256240000 242170000 130190000 241670000 14095000 163230000 292350000 235880000 198140000 293790000 232980000 251770000 233250000 11 11 5 11 11 11 11 11 11 11 11 86429000000 47829000000 38600000000 6966 1533;1605 6489 37762;37763;37764;37765;37766;37767;37768;37769;37770;37771;37772;37773;37774;37775;37776;37777;37778;37779;37780;37781;37782;37783;37784;37785;37786 45386;45387;45388;45389;45390;45391;45392;45393;45394;45395;45396;45397;45398;45399;45400;45401;45402;45403;45404;45405;45406;45407;45408;45409;45410;45411;45412;45413;45414;45415;45416;45417;45418 45404 33 GLFIIDGK Unmodified 861.496 0.49600404 899 P32119 PRDX2 Peroxiredoxin-2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.06 2.25 2 1 2 2 2 2 5 2 11 7 61.273 61.378 2 0.00072389 20312 20211116_3445_TMUAki_TMT10x_S_F6 135.16 75.955 383430000 613260000 2554500 733260000 436160000 676490000 354160000 516620000 393340000 438000000 495280000 357020000 572680000 34154000 738720000 416260000 689080000 364740000 530980000 402060000 431010000 474620000 15 15 10 15 15 15 15 15 15 15 15 214600000 340060000 1942300 438410000 257150000 522180000 193740000 308840000 193410000 241990000 270420000 199830000 317680000 20164000 441560000 245090000 522000000 199820000 322770000 199510000 239100000 258480000 8 8 7 8 8 8 8 8 8 8 8 168830000 273190000 612210 294850000 179010000 154310000 160430000 207780000 199920000 196010000 224850000 157200000 255000000 13990000 297160000 171170000 167070000 164920000 208210000 202540000 191910000 216130000 7 7 3 7 7 7 7 7 7 7 7 53282000000 32837000000 20444000000 6967 899 6490 37787;37788;37789;37790;37791;37792;37793;37794;37795;37796;37797;37798;37799;37800;37801;37802;37803;37804 45419;45420;45421;45422;45423;45424;45425;45426;45427;45428;45429;45430;45431;45432;45433;45434;45435;45436;45437;45438;45439 45436 21 GLFIIDPNGVIK Unmodified 1284.7442 0.74417324 862 P30048;P30048-2 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 2.8 2.21 11 20 7 2 5 33 12 49.173 49.094 2;3 6.8741E-24 27409 20211116_3439_TMUAki_TMT10x_S_F1 242.59 166.37 228540000 362010000 1215400 324300000 222970000 310160000 225600000 214130000 211310000 232620000 267380000 212780000 337660000 17352000 333290000 213760000 314690000 228260000 223110000 217580000 226430000 256200000 34 34 16 34 33 34 34 34 33 34 34 123880000 184330000 144270 163510000 106170000 190760000 107150000 108660000 109920000 121180000 136290000 115330000 171930000 7854200 168690000 101680000 190810000 108720000 115000000 112640000 117830000 130650000 25 25 8 25 24 25 25 25 24 25 25 104660000 177680000 1071200 160790000 116800000 119400000 118450000 105470000 101380000 111450000 131100000 97453000 165730000 9497400 164600000 112080000 123880000 119540000 108120000 104940000 108600000 125540000 9 9 8 9 9 9 9 9 9 9 9 28635000000 15185000000 13450000000 6968 862 6491 37805;37806;37807;37808;37809;37810;37811;37812;37813;37814;37815;37816;37817;37818;37819;37820;37821;37822;37823;37824;37825;37826;37827;37828;37829;37830;37831;37832;37833;37834;37835;37836;37837;37838;37839;37840;37841;37842;37843;37844;37845;37846;37847;37848;37849 45440;45441;45442;45443;45444;45445;45446;45447;45448;45449;45450;45451;45452;45453;45454;45455;45456;45457;45458;45459;45460;45461;45462;45463;45464;45465;45466;45467;45468;45469;45470;45471;45472;45473;45474;45475;45476;45477;45478;45479;45480;45481;45482;45483;45484;45485;45486;45487 45477 48 GLFLPEDENLREK Unmodified 1558.7991 0.79912193 1566 Q12797;Q12797-10 ASPH Aspartyl/asparaginyl beta-hydroxylase yes no 0 0 0 1 By MS/MS 4 0 1 1 54.418 54.577 3 2.2323E-05 16249 20211116_3431_TMUAki_TMT10x_P_F4 87.026 68.449 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6969 1566 6492 37850 45488 45488 1 GLFSAMTSVHSACAK Oxidation (M) 1581.7279 0.7279476 3411 yes no 0 0 1 0 By MS/MS By MS/MS 3.5 0.5 2 2 1 3 76.314 76.217 2 0.045272 25497 20211116_3442_TMUAki_TMT10x_S_F4 51.268 8.5499 + 22479000 39088000 22796 29715000 28221000 33478000 28458000 30732000 29951000 32873000 33671000 20929000 36438000 1826100 31032000 27058000 33811000 28900000 31449000 30537000 32017000 32366000 7 7 2 7 7 7 7 7 7 7 7 2363000 4351400 79.468 3197400 2023300 5178500 2426900 3462600 3299900 3244900 3563100 2200200 4056000 191220 3373000 1950200 5114700 2467600 3600600 3328200 3178100 3429100 1 1 1 1 1 1 1 1 1 1 1 20116000 34736000 22717 26517000 26198000 28299000 26031000 27269000 26651000 29628000 30108000 18729000 32382000 1634900 27659000 25108000 28696000 26433000 27848000 27208000 28839000 28937000 6 6 1 6 6 6 6 6 6 6 6 3805500000 658660000 3146900000 6970 3411 6493 37851;37852;37853;37854 45489;45490 45490 3329 2 GLFSANDWQCK Unmodified 1324.587 0.58702067 413 O95218;O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 yes no 0 0 0 0 By MS/MS 7 0 2 2 60.909 61.401 2 1.2279E-07 20443 20211116_3446_TMUAki_TMT10x_S_F7 121.83 91.845 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6971 413 6494 37855;37856 45491;45492 45491 2 GLFTGLTPR Unmodified 960.53927 0.53926584 3346 Q9Y6C9 MTCH2 Mitochondrial carrier homolog 2 yes yes 0 0 0 0 By MS/MS By MS/MS 2.33 0.943 1 2 1 2 56.163 55.858 2 0.00027417 18406 20211116_3430_TMUAki_TMT10x_P_F3 131.06 100.88 9249200 15014000 84159 15168000 11871000 12977000 9243900 13348000 11737000 11699000 12722000 8612400 14010000 864240 15430000 11320000 13364000 9591000 13503000 11866000 11494000 12242000 2 2 1 2 2 2 2 2 2 2 2 4121800 6303900 84159 6602700 6392900 9241300 5144500 5910800 5034200 4821000 5555300 3838400 5883300 451970 6754200 6103500 9176800 5280200 6145100 5144800 4753400 5342800 1 1 1 1 1 1 1 1 1 1 1 5127500 8710400 0 8565300 5478100 3736000 4099400 7436800 6702500 6877700 7167200 4774000 8127200 412270 8676000 5216900 4187000 4310900 7357700 6721300 6740200 6899600 1 1 0 1 1 1 1 1 1 1 1 1379100000 592560000 786490000 6972 3346 6495 37857;37858;37859 45493;45494;45495 45493 3 GLFYFDNSFRPVPLEQTYVGITEKK Unmodified 2947.512 0.51199504 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 2 By matching By MS/MS 2.5 0.5 1 1 1 1 77.559 77.485 4 2.6269E-22 28230 20211116_3441_TMUAki_TMT10x_S_F3 143.31 132.21 5311400 9508300 157140 7879100 9121300 7200400 7370500 7643100 7281500 7941800 8532300 4946600 8866200 640170 8142900 8711500 7387100 7565000 7757600 7456000 7744100 8192100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5311400 9508300 157140 7879100 9121300 7200400 7370500 7643100 7281500 7941800 8532300 4946600 8866200 640170 8142900 8711500 7387100 7565000 7757600 7456000 7744100 8192100 1 1 1 1 1 1 1 1 1 1 1 2008400000 630200000 1378200000 6973 352 6496 37860;37861 45496 45496 1 GLGAAEFGGAAGNVEAPGETFAQR Unmodified 2276.0822 0.082173085 1971 Q6EEV4;Q6EEV4-2 POLR2M DNA-directed RNA polymerase II subunit GRINL1A, isoforms 4/5 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 61.505 61.565 3 2.4732E-29 19587 20211116_3442_TMUAki_TMT10x_S_F4 167.02 153.39 10590000 17667000 246910 17641000 13793000 18477000 13146000 15370000 14163000 14409000 15209000 9862400 16485000 1138300 18011000 13223000 18701000 13400000 15756000 14401000 14113000 14639000 6 6 4 6 6 6 6 6 6 6 6 5466100 8481300 116790 8098500 7745600 12623000 7975200 7935900 7175600 7015800 7319700 5090300 7912600 589840 8356500 7439400 12475000 8052900 8277700 7340000 6889900 7056600 3 3 2 3 3 3 3 3 3 3 3 5124200 9185800 130120 9542200 6047300 5853100 5170800 7434500 6987500 7393600 7889500 4772100 8572700 548510 9654300 5783600 6225900 5347000 7477800 7061100 7222600 7582800 3 3 2 3 3 3 3 3 3 3 3 3079700000 1869400000 1210300000 6974 1971 6497 37862;37863;37864;37865 45497;45498;45499;45500;45501;45502 45500 6 GLGAEIAK Unmodified 757.4334 0.43340378 3076 Q9UBE0;Q9UBE0-3;Q9UBE0-2 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed yes no 0 0 0 0 By MS/MS 3 0 1 1 41.294 41.348 2 0.0064163 12450 20211116_3430_TMUAki_TMT10x_P_F3 86.095 35.129 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6975 3076 6498 37866 45503 45503 1 GLGAGAGAGEESPATSLPR Unmodified 1696.838 0.83802663 172 O15173;O15173-2 PGRMC2 Membrane-associated progesterone receptor component 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.14 0.639 1 4 2 4 3 43.032 42.955 2;3 4.3696E-117 12908 20211116_3430_TMUAki_TMT10x_P_F3 356.46 303.38 3666700 5805800 11920 7327500 7075200 6747400 4859400 5888300 6220800 4486700 5854400 3413700 5423100 307810 7359100 6725500 6890300 5087100 5988200 6256000 4439600 5658800 7 7 4 7 7 7 7 7 7 7 7 2244600 3487000 11872 4311600 5909200 5716100 3810000 3756700 3907400 2813500 3708500 2089700 3256800 196950 4361300 5610600 5692600 3977400 3890200 3963800 2786700 3583600 4 4 3 4 4 4 4 4 4 4 4 1422000 2318800 47.389 3015900 1166100 1031200 1049400 2131600 2313400 1673100 2145800 1324000 2166300 110860 2997800 1114900 1197700 1109700 2098000 2292200 1652900 2075200 3 3 1 3 3 3 3 3 3 3 3 801110000 497370000 303740000 6976 172 6499 37867;37868;37869;37870;37871;37872;37873 45504;45505;45506;45507;45508;45509;45510 45506 7 GLGDCLVK Unmodified 860.44259 0.44258826 639;502 P05141;P12236 SLC25A5;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 46.831 46.961 2 0.0024136 12318 20211116_3444_TMUAki_TMT10x_S_F5 109.86 59.256 51226000 80254000 441530 86560000 107480000 90936000 65458000 49764000 42981000 46100000 65627000 47699000 74909000 5409600 87926000 102030000 91444000 67899000 52565000 45513000 45175000 62607000 5 5 4 5 5 5 5 5 5 5 5 35890000 55656000 390730 59223000 94160000 79535000 51470000 34537000 29145000 31784000 45050000 33420000 51947000 4155800 60469000 89235000 78761000 53749000 37304000 31191000 31155000 42966000 3 3 3 3 3 3 3 3 3 3 3 15336000 24598000 50804 27337000 13325000 11401000 13988000 15227000 13837000 14317000 20577000 14279000 22963000 1253900 27456000 12794000 12683000 14150000 15261000 14322000 14020000 19641000 2 2 1 2 2 2 2 2 2 2 2 2010500000 1125800000 884650000 6977 502;639 6500 37874;37875;37876;37877;37878 45511;45512;45513;45514;45515 45515 5 GLGDRPAPK Unmodified 909.50321 0.50321468 2973;1941 Q9NVI7;Q9NVI7-2;Q5T9A4 ATAD3A;ATAD3B ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B no no 0 0 0 1 By MS/MS 5 0 1 1 29.612 29.545 3 0.0019966 6508 20211116_3433_TMUAki_TMT10x_P_F5 80.755 66.76 619710 1062300 0 843380 798270 962540 632410 406610 516270 500330 686760 577000 990410 52453 877630 761150 960730 646560 444280 536340 484790 657210 1 1 0 1 1 1 1 1 1 1 1 619710 1062300 0 843380 798270 962540 632410 406610 516270 500330 686760 577000 990410 52453 877630 761150 960730 646560 444280 536340 484790 657210 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29122000 29122000 0 6978 2973;1941 6501 37879 45516 45516 1 GLGGEVPGSHQGPDPYR Unmodified 1721.8121 0.81214624 2023 Q6UW68 TMEM205 Transmembrane protein 205 yes yes 0 0 0 0 By MS/MS By MS/MS 3.8 1.17 1 1 1 2 3 2 35.513 35.453 3 1.3991E-15 8598 20211116_3431_TMUAki_TMT10x_P_F4 149.57 126.46 2506200 4171600 33099 4993600 6839800 6540700 3697000 4319700 4756500 3498500 4090200 2333600 3895600 281890 5059400 6480200 6517900 3947200 4479400 4768900 3450600 3966300 5 5 3 5 5 5 5 5 5 5 5 1966800 3286000 27838 3941600 6254700 6054300 3211400 3361300 3653700 2765800 3152200 1831300 3068600 231630 4006400 5921300 5976900 3430200 3535600 3679900 2725800 3056400 3 3 1 3 3 3 3 3 3 3 3 539410 885560 5260.6 1051900 585190 486390 485650 958400 1102800 732660 937950 502290 826950 50265 1053000 558920 541000 516920 943860 1089000 724850 909900 2 2 2 2 2 2 2 2 2 2 2 507800000 401180000 106620000 6979 2023 6502 37880;37881;37882;37883;37884 45517;45518;45519;45520;45521 45518 5 GLGHQVATDALVAMEK Oxidation (M) 1654.8349 0.83485551 3285 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog yes yes 0 0 1 0 By MS/MS By MS/MS 5 0.756 2 3 2 3 4 45.578 45.712 3;4 7.9136E-08 11628 20211116_3434_TMUAki_TMT10x_P_F6 115.56 98.345 10166000 16387000 176490 18204000 17413000 20992000 11900000 17111000 17680000 14689000 15146000 9466800 15297000 1047600 18484000 16564000 21126000 12538000 17521000 17644000 14446000 14689000 7 7 4 7 7 7 7 7 7 7 7 7008900 10597000 159900 12128000 14080000 17867000 9181300 11824000 11824000 9891900 10223000 6526800 9893600 778660 12350000 13384000 17712000 9651000 12269000 11856000 9740600 9911500 4 4 3 4 4 4 4 4 4 4 4 3157500 5790000 16591 6075700 3332500 3124800 2719100 5286900 5856400 4797400 4922800 2939900 5403800 268990 6133900 3180200 3413900 2887300 5251600 5787500 4705600 4777700 3 3 1 3 3 3 3 3 3 3 3 2648900000 1444300000 1204600000 6980 3285 6503 37885;37886;37887;37888;37889;37890;37891 45522;45523;45524;45525;45526;45527;45528;45529 45525 3251 8 GLGHQVATDALVAMEK Unmodified 1638.8399 0.83994089 3285 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 58.344 58.382 3 6.8411E-11 17265 20211116_3445_TMUAki_TMT10x_S_F6 132.84 113.26 13096000 21921000 43423 24872000 12662000 10449000 13377000 9662900 8184100 10753000 15226000 12194000 20465000 1102200 24949000 12160000 11516000 13371000 9896900 8803000 10457000 14470000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13096000 21921000 43423 24872000 12662000 10449000 13377000 9662900 8184100 10753000 15226000 12194000 20465000 1102200 24949000 12160000 11516000 13371000 9896900 8803000 10457000 14470000 2 2 1 2 2 2 2 2 2 2 2 699140000 0 699140000 6981 3285 6503 37892;37893;37894 45530;45531;45532;45533 45532 4 GLGILSLK Unmodified 799.51674 0.51673948 2350 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 66.432 65.969 2 0.0005229 23706 20211116_3441_TMUAki_TMT10x_S_F3 138.9 44.233 3627600 6623800 99969 5897300 4790600 3799200 3617800 5634200 5064400 5158400 5604800 3378400 6178000 410210 6036200 4570100 4041100 3775800 5621600 5108000 5057600 5390100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3627600 6623800 99969 5897300 4790600 3799200 3617800 5634200 5064400 5158400 5604800 3378400 6178000 410210 6036200 4570100 4041100 3775800 5621600 5108000 5057600 5390100 1 1 1 1 1 1 1 1 1 1 1 225320000 0 225320000 6982 2350 6504 37895;37896 45534;45535 45535 2 GLGLDDALEPR Unmodified 1154.5932 0.5931519 3221 Q9Y230 RUVBL2 RuvB-like 2 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 55.172 54.912 2 7.1037E-12 16872 20211116_3442_TMUAki_TMT10x_S_F4 142.43 111.14 22762000 36367000 261210 40513000 29548000 32870000 24674000 28731000 28926000 26164000 32682000 21195000 33950000 2146300 40923000 28220000 33864000 25414000 29344000 29374000 25659000 31410000 6 6 4 6 6 6 6 6 6 6 6 10500000 16157000 70690 18459000 17512000 22593000 14644000 11702000 12162000 11326000 14215000 9776800 15085000 1009600 18730000 16722000 22516000 14927000 12436000 12555000 11077000 13649000 3 3 2 3 3 3 3 3 3 3 3 12262000 20209000 190520 22054000 12036000 10277000 10029000 17029000 16763000 14838000 18466000 11418000 18864000 1136700 22192000 11498000 11348000 10487000 16907000 16820000 14582000 17761000 3 3 2 3 3 3 3 3 3 3 3 2169600000 1219600000 950040000 6983 3221 6505 37897;37898;37899;37900;37901;37902 45536;45537;45538;45539;45540;45541;45542;45543 45543 8 GLGLEPTALAR Unmodified 1096.6241 0.6240581 2333 Q8WZA9 IRGQ Immunity-related GTPase family Q protein yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 51.4 51.531 2 3.4438E-06 14418 20211116_3445_TMUAki_TMT10x_S_F6 121.64 86.539 7412900 12444000 221150 12986000 6960300 7722800 6542500 12484000 11495000 10009000 11298000 6903800 11614000 814340 13131000 6676800 8299100 6811500 12379000 11470000 9877300 10905000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7412900 12444000 221150 12986000 6960300 7722800 6542500 12484000 11495000 10009000 11298000 6903800 11614000 814340 13131000 6676800 8299100 6811500 12379000 11470000 9877300 10905000 2 2 2 2 2 2 2 2 2 2 2 487630000 0 487630000 6984 2333 6506 37903;37904 45544;45545;45546 45546 3 GLGLGANLTEAQALTPTGPSR Unmodified 2023.0698 0.069817485 2378 Q92917 GPKOW G patch domain and KOW motifs-containing protein yes yes 0 0 0 0 By MS/MS 7 0 1 1 64.302 64.734 3 2.942E-14 21884 20211116_3446_TMUAki_TMT10x_S_F7 134.29 113.45 2264300 4334200 0 4175800 2888800 2685000 2717700 3076400 2606100 2824100 3239700 2108000 4043700 152130 4248900 2762700 2836100 2762200 3100600 2678600 2768600 3105600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2264300 4334200 0 4175800 2888800 2685000 2717700 3076400 2606100 2824100 3239700 2108000 4043700 152130 4248900 2762700 2836100 2762200 3100600 2678600 2768600 3105600 1 1 0 1 1 1 1 1 1 1 1 566190000 0 566190000 6985 2378 6507 37905 45547 45547 1 GLGLPGCIPGLLPENSMDCI Unmodified 2112.0054 0.0053680134 2977 Q9NVP2 ASF1B Histone chaperone ASF1B yes yes 0 0 0 0 By matching By MS/MS 6 0 2 1 1 82.193 82.194 3 0.0058213 27002 20211116_3445_TMUAki_TMT10x_S_F6 50.787 40.828 474540 714070 0 747620 532460 493710 585960 414950 413530 398410 638930 441850 666430 39842 756530 511870 516850 586230 425380 436240 389790 609380 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 474540 714070 0 747620 532460 493710 585960 414950 413530 398410 638930 441850 666430 39842 756530 511870 516850 586230 425380 436240 389790 609380 1 1 0 1 1 1 1 1 1 1 1 132970000 68050000 64919000 6986 2977 6508 37906;37907 45548 45548 1 GLGLSPDLVVCR Unmodified 1284.686 0.68600643 709 P17812 CTPS1 CTP synthase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.8 0.748 2 2 1 2 3 61.125 61.374 2 3.2578E-24 18080 20211116_3434_TMUAki_TMT10x_P_F6 250.49 205.41 23813000 41616000 0 38935000 32280000 41177000 28662000 32986000 29713000 29052000 33470000 22171000 38823000 2002900 39943000 30855000 41626000 29295000 33834000 30315000 28535000 32171000 4 4 0 4 4 4 4 4 4 4 4 12883000 22581000 0 21061000 19375000 29937000 17882000 17743000 15661000 15846000 18102000 11995000 21065000 1109400 21726000 18537000 29676000 18148000 18598000 16116000 15554000 17387000 2 2 0 2 2 2 2 2 2 2 2 10930000 19036000 0 17874000 12905000 11240000 10780000 15243000 14052000 13205000 15368000 10177000 17758000 893520 18217000 12318000 11950000 11147000 15235000 14199000 12981000 14784000 2 2 0 2 2 2 2 2 2 2 2 6864700000 3647700000 3217000000 6987 709 6509 37908;37909;37910;37911;37912 45549;45550;45551;45552 45549 4 GLGPLFK Unmodified 730.43776 0.43776088 3339 Q9Y678 COPG1 Coatomer subunit gamma-1 yes yes 0 0 0 0 By matching By MS/MS 2 0 2 1 1 59.488 59.24 2 0.039906 18110 20211116_3440_TMUAki_TMT10x_S_F2 74.597 38.791 5302800 8669000 0 9370700 5041200 4624500 4493300 6674300 7162500 6338700 7579700 4937400 8091700 429330 9439100 4819500 5050000 4669000 6672500 7184600 6204600 7299000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5302800 8669000 0 9370700 5041200 4624500 4493300 6674300 7162500 6338700 7579700 4937400 8091700 429330 9439100 4819500 5050000 4669000 6672500 7184600 6204600 7299000 1 1 0 1 1 1 1 1 1 1 1 506960000 275890000 231070000 6988 3339 6510 37913;37914 45553 45553 1 GLGQPGPLGPDGMSK Oxidation (M) 1425.6922 0.69221402 3375 yes yes 0 0 1 0 By MS/MS By MS/MS 7 0 3 2 1 71.458 71.803 2 0.10795 24301 20211116_3435_TMUAki_TMT10x_P_F7 41.704 16.045 + 11537000 19306000 74986 18043000 11533000 20037000 14403000 11135000 11565000 12342000 13996000 10742000 18010000 922130 18526000 11128000 20090000 14371000 11807000 11976000 12005000 13427000 4 4 2 4 4 4 4 4 4 4 4 9424100 15402000 74986 14502000 9123500 17728000 11917000 8940500 9356800 10094000 11302000 8775000 14368000 803410 14906000 8820000 17664000 11863000 9568100 9700000 9810700 10843000 3 3 2 3 3 3 3 3 3 3 3 2112800 3904200 0 3541600 2409400 2308900 2485700 2195000 2207900 2248600 2694300 1966700 3641700 118720 3620200 2308200 2425600 2508800 2239100 2275500 2193900 2584000 1 1 0 1 1 1 1 1 1 1 1 2207700000 1359700000 847920000 6989 3375 6511 37915;37916;37917 45554 45554 3307 1 GLGSTVQEIDLTGVK Unmodified 1515.8144 0.81443765 2424 Q96CN7 ISOC1 Isochorismatase domain-containing protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.707 2 4 2 5 3 65.311 65.355 2;3 3.4257E-32 20924 20211116_3433_TMUAki_TMT10x_P_F5 193.28 140.49 43953000 74101000 291800 75868000 53828000 68555000 48236000 47369000 48532000 48940000 56753000 40926000 69151000 3936000 77164000 51483000 69815000 49229000 49278000 49651000 47733000 54493000 8 8 5 8 8 8 8 8 8 8 8 22040000 36104000 177860 37604000 29735000 46994000 26851000 22836000 23592000 23836000 27388000 20522000 33694000 2009700 38396000 28444000 46753000 27286000 24467000 24278000 23239000 26303000 4 4 2 4 4 4 4 4 4 4 4 21914000 37998000 113950 38265000 24093000 21561000 21385000 24533000 24940000 25103000 29365000 20404000 35457000 1926300 38768000 23039000 23062000 21943000 24811000 25373000 24494000 28191000 4 4 3 4 4 4 4 4 4 4 4 3735200000 2300000000 1435100000 6990 2424 6512 37918;37919;37920;37921;37922;37923;37924;37925 45555;45556;45557;45558;45559;45560;45561;45562;45563;45564;45565 45559 11 GLGTDEDSLIEIICSR Unmodified 1776.8564 0.85637882 537 P07355;P07355-2;A6NMY6 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 0 0 0 0 By MS/MS 1.5 0.5 1 1 2 78.646 78.611 2;3 0.00046344 27651 20211116_3439_TMUAki_TMT10x_S_F1 76.326 60.435 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6991 537 6513 37926;37927 45566;45567 45566 2 GLGTDEDTIIDIITHR Unmodified 1767.9003 0.90029254 548 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 By MS/MS By MS/MS 2.33 1.11 2 1 2 1 3 3 77.652 77.592 3 6.0326E-47 27228 20211116_3439_TMUAki_TMT10x_S_F1 242.91 225.16 9555500 15339000 160480 14070000 9167900 15246000 11812000 10839000 9622100 11025000 11674000 8898300 14308000 936350 14461000 8866800 15360000 11775000 11248000 9957500 10759000 11198000 3 3 3 3 3 3 3 3 3 3 3 6551400 10277000 154010 9257900 5422900 11599000 8253800 7490000 6447100 7556100 7652400 6101200 9585600 670890 9551600 5280300 11579000 8168300 7824700 6680600 7377000 7344600 2 2 2 2 2 2 2 2 2 2 2 3004100 5062000 6463.5 4812500 3745000 3647400 3558100 3349100 3175100 3468400 4022100 2797200 4722500 265460 4909700 3586600 3780900 3607000 3423800 3276900 3382500 3853700 1 1 1 1 1 1 1 1 1 1 1 5498900000 3988000000 1510900000 6992 548 6514 37928;37929;37930;37931;37932;37933 45568;45569;45570;45571 45570 4 GLGTGTLYIAESR Unmodified 1336.6987 0.69867961 1216 P54105 CLNS1A Methylosome subunit pICln yes yes 0 0 0 0 By MS/MS By MS/MS 4.92 0.828 5 4 4 7 6 52.625 52.768 2;3 1.9207E-29 14910 20211116_3445_TMUAki_TMT10x_S_F6 239.55 196.43 31543000 55504000 0 55457000 42682000 49039000 33608000 38058000 38553000 35086000 41232000 29367000 51791000 2416000 56482000 40675000 50107000 34717000 39160000 39100000 34389000 39692000 11 11 0 11 11 11 11 11 11 11 11 16258000 27792000 0 27821000 26497000 35252000 20518000 19046000 19826000 18527000 20896000 15136000 25933000 1299900 28491000 25243000 35090000 21104000 20167000 20237000 18116000 20124000 6 6 0 6 6 6 6 6 6 6 6 15285000 27712000 0 27636000 16186000 13787000 13090000 19013000 18728000 16560000 20336000 14231000 25858000 1116100 27992000 15431000 15017000 13614000 18994000 18863000 16274000 19568000 5 5 0 5 5 5 5 5 5 5 5 10948000000 6172900000 4775600000 6993 1216 6515 37934;37935;37936;37937;37938;37939;37940;37941;37942;37943;37944;37945;37946 45572;45573;45574;45575;45576;45577;45578;45579;45580;45581;45582;45583;45584;45585 45583 14 GLGVEIAK Unmodified 785.4647 0.46470391 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 48.108 48.261 2 0.0005229 12818 20211116_3444_TMUAki_TMT10x_S_F5 138.9 60.399 46941000 71025000 244490 73346000 54239000 63752000 51194000 50085000 52345000 50588000 57125000 43707000 66283000 3987300 74517000 51930000 65231000 52123000 51627000 53371000 49386000 54958000 7 7 3 7 7 7 7 7 7 7 7 22533000 32602000 55114 34057000 31721000 40567000 25534000 23605000 25454000 23858000 26214000 20979000 30427000 1846000 34738000 30251000 40545000 26221000 24863000 25926000 23290000 25265000 3 3 1 3 3 3 3 3 3 3 3 24408000 38423000 189380 39288000 22518000 23185000 25660000 26480000 26891000 26730000 30911000 22727000 35856000 2141300 39779000 21679000 24687000 25902000 26764000 27445000 26096000 29694000 4 4 2 4 4 4 4 4 4 4 4 2055400000 1157500000 897930000 6994 769 6516 37947;37948;37949;37950;37951;37952 45586;45587;45588;45589;45590;45591;45592 45591 7 GLGWVQFSSEEGLR Unmodified 1563.7682 0.76815616 2759 Q9GZT3;Q9GZT3-2 SLIRP SRA stem-loop-interacting RNA-binding protein, mitochondrial yes no 0 0 0 0 By MS/MS 6 0 1 1 69.505 69.421 2 4.3757E-23 21797 20211116_3445_TMUAki_TMT10x_S_F6 183.08 142.37 8144200 14394000 573680 14666000 10658000 8715200 10524000 6906900 5780700 7472000 10552000 7587400 13432000 1245100 14854000 10251000 9204900 10535000 7130700 6257700 7274200 10031000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8144200 14394000 573680 14666000 10658000 8715200 10524000 6906900 5780700 7472000 10552000 7587400 13432000 1245100 14854000 10251000 9204900 10535000 7130700 6257700 7274200 10031000 2 2 2 2 2 2 2 2 2 2 2 467710000 0 467710000 6995 2759 6517 37953 45593;45594 45593 2 GLHSQNFTQALLER Unmodified 1612.8322 0.8321534 3304 Q9Y4W2;Q9Y4W2-2;Q9Y4W2-3 LAS1L Ribosomal biogenesis protein LAS1L yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 47.624 48.163 3 3.6064E-14 14572 20211116_3435_TMUAki_TMT10x_P_F7 151.07 130.2 4249600 6638200 144600 6944000 6411700 6704100 4702800 6516500 5733700 5377200 6430600 3957800 6195300 517360 7058900 6113600 6840200 4891500 6600900 5812700 5298600 6181800 2 2 2 2 2 2 2 2 2 2 2 2108500 3170900 101420 3381500 4149400 4860800 2881000 3376600 2948300 2879600 3334500 1963900 2959600 297910 3456900 3952900 4827200 2990700 3493100 3010200 2832800 3204700 1 1 1 1 1 1 1 1 1 1 1 2141100 3467300 43177 3562500 2262300 1843300 1821800 3140000 2785400 2497700 3096100 1993900 3235700 219450 3601900 2160700 2013000 1900800 3107900 2802500 2465800 2977100 1 1 1 1 1 1 1 1 1 1 1 780300000 461950000 318350000 6996 3304 6518 37954;37955;37956 45595;45596;45597 45595 3 GLHVEVR Unmodified 808.45554 0.45553621 3358 Q9Y6X9;Q9Y6X9-2 MORC2 MORC family CW-type zinc finger protein 2 yes no 0 0 0 0 By MS/MS 4 0 1 1 29.955 29.994 2 0.041711 6378 20211116_3431_TMUAki_TMT10x_P_F4 73.616 23.592 270100 516530 8724.1 523810 463610 524200 316670 261750 266050 272740 356130 251560 482000 33234 533860 441360 528100 327320 279710 276070 265920 340760 1 1 1 1 1 1 1 1 1 1 1 270100 516530 8724.1 523810 463610 524200 316670 261750 266050 272740 356130 251560 482000 33234 533860 441360 528100 327320 279710 276070 265920 340760 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10493000 10493000 0 6997 3358 6519 37957 45598 45598 1 GLIAAICAGPTALLAHEIGFGSK Unmodified 2266.2144 0.21437323 2578 Q99497 PARK7 Protein deglycase DJ-1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.62 0.857 1 2 4 1 5 3 81.144 81.13 2;3 2.5152E-69 26572 20211116_3431_TMUAki_TMT10x_P_F4 243.06 219.02 41394000 64961000 77880 61647000 42049000 44053000 45731000 16601000 18283000 20640000 36089000 38541000 60603000 3300400 62861000 40402000 45346000 45344000 18385000 20433000 19992000 34263000 10 10 4 10 10 10 10 10 10 10 10 17368000 26227000 11708 25858000 12891000 21413000 14524000 6176100 7191600 8599700 14689000 16170000 24471000 1250200 26339000 12394000 21746000 14420000 7120900 7903100 8299100 13938000 5 5 2 5 5 5 5 5 5 5 5 24026000 38734000 66172 35789000 29158000 22640000 31207000 10425000 11092000 12041000 21400000 22371000 36132000 2050200 36522000 28009000 23601000 30925000 11264000 12530000 11693000 20325000 5 5 2 5 5 5 5 5 5 5 5 17345000000 9177300000 8168000000 6998 2578 6520 37958;37959;37960;37961;37962;37963;37964;37965 45599;45600;45601;45602;45603;45604;45605;45606;45607;45608;45609 45601 11 GLIEIISNAAEYENIPIR Unmodified 2014.0735 0.073505879 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 By MS/MS 5.5 1.5 1 1 2 80.579 80.587 2;3 3.0862E-40 28086 20211116_3435_TMUAki_TMT10x_P_F7 192.65 162.71 1100400 1814800 0 1854600 1120700 2176900 1263000 1065400 1001100 1356300 1253500 1024600 1693500 89738 1894000 1078100 2172800 1265600 1148000 1038900 1312700 1201400 1 1 0 1 1 1 1 1 1 1 1 1100400 1814800 0 1854600 1120700 2176900 1263000 1065400 1001100 1356300 1253500 1024600 1693500 89738 1894000 1078100 2172800 1265600 1148000 1038900 1312700 1201400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 704050000 704050000 0 6999 352 6521 37966;37967 45610;45611 45611 2 GLIENPALLR Unmodified 1094.6448 0.64479354 409 O95168;O95168-2 NDUFB4 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 54.763 54.853 2 5.1191E-05 15822 20211116_3445_TMUAki_TMT10x_S_F6 101.72 86.64 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7000 409 6522 37968;37969 45612;45613 45613 2 GLIESALNLGR Unmodified 1141.6455 0.64552182 2050 Q7L099;Q7L099-3;Q7L099-2;Q7L099-4 RUFY3 Protein RUFY3 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 67.794 67.673 2 4.9674E-14 21356 20211116_3436_TMUAki_TMT10x_P_F8 150.35 121.84 7124500 12135000 91910 11464000 9648200 8783700 8558500 8957800 8312300 8593200 10146000 6634300 11321000 711670 11702000 9229300 9117500 8730600 9088000 8532200 8407600 9730300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7124500 12135000 91910 11464000 9648200 8783700 8558500 8957800 8312300 8593200 10146000 6634300 11321000 711670 11702000 9229300 9117500 8730600 9088000 8532200 8407600 9730300 1 1 1 1 1 1 1 1 1 1 1 288980000 0 288980000 7001 2050 6523 37970;37971 45614;45615 45614 2 GLIPAGTQHSMIATTGK Oxidation (M) 1697.8771 0.87705468 3311 Q9Y520;Q9Y520-3;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520-7;Q9Y520-2 PRRC2C Protein PRRC2C yes no 0 0 1 0 By MS/MS By MS/MS 8 0 2 1 1 38.75 39.005 3 5.7253E-11 9115 20211116_3447_TMUAki_TMT10x_S_F8 124.25 102.95 302770 495930 2246 587680 922330 863100 447130 529280 544130 431590 523380 281910 463100 32976 597170 872370 854780 481390 552060 548580 425540 505530 2 2 1 2 2 2 2 2 2 2 2 302770 495930 2246 587680 922330 863100 447130 529280 544130 431590 523380 281910 463100 32976 597170 872370 854780 481390 552060 548580 425540 505530 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 62209000 62209000 0 7002 3311 6524 37972;37973 45616;45617;45618 45618 3272 3 GLIPSSPQNEPTASVPPESDVYR Unmodified 2439.1918 0.19178311 1904 Q53GG5-2 PDLIM3 PDZ and LIM domain protein 3 yes yes 0 0 0 0 By MS/MS 4 0 1 1 57.602 57.529 3 0.03111 17935 20211116_3442_TMUAki_TMT10x_S_F4 43.035 29.02 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7003 1904 6525 37974 45619 45619 1 GLIPVFALGR Unmodified 1041.6335 0.63350058 3155 Q9UKF6 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 75.586 75.607 2 5.1507E-05 24966 20211116_3431_TMUAki_TMT10x_P_F4 101.69 74.166 13332000 22001000 250300 20142000 15011000 22438000 15261000 12441000 11490000 12967000 16027000 12414000 20522000 1227100 20714000 14406000 22492000 15350000 13169000 12015000 12643000 15320000 3 3 1 3 3 3 3 3 3 3 3 9555800 15683000 250300 14801000 10269000 18168000 11289000 9043400 8187100 9095600 11269000 8899200 14630000 1029000 15212000 9886700 18096000 11302000 9656800 8574100 8881100 10775000 2 2 1 2 2 2 2 2 2 2 2 3776000 6318400 0 5341200 4741900 4269900 3971500 3397500 3303300 3871700 4758200 3514800 5892100 198080 5501900 4519000 4396400 4048000 3512500 3441400 3761800 4545000 1 1 0 1 1 1 1 1 1 1 1 404180000 225920000 178250000 7004 3155 6526 37975;37976;37977 45620;45621;45622;45623 45620 4 GLIQQFTTITGASESVGK Unmodified 1835.9629 0.9628928 391 O94888 UBXN7 UBX domain-containing protein 7 yes yes 0 0 0 0 By MS/MS By MS/MS 3.29 3.01 3 2 2 4 3 75.578 75.523 2;3 1.7218E-47 24378 20211116_3428_TMUAki_TMT10x_P_F1 220.21 196.83 47583000 78962000 521000 73708000 54693000 65860000 56817000 49109000 47267000 50960000 60392000 44305000 73660000 4098300 75448000 52499000 67202000 57225000 50831000 48970000 49694000 57852000 10 10 6 10 10 10 10 10 10 10 10 19316000 31430000 323060 29228000 18534000 34838000 22378000 20131000 18647000 19606000 24219000 17987000 29319000 1812900 30057000 17883000 34814000 22383000 21194000 19331000 19170000 23191000 5 5 4 5 5 5 5 5 5 5 5 28267000 47532000 197940 44480000 36159000 31022000 34438000 28978000 28620000 31354000 36173000 26318000 44341000 2285400 45391000 34617000 32388000 34842000 29637000 29639000 30524000 34661000 5 5 2 5 5 5 5 5 5 5 5 6358900000 3347700000 3011200000 7005 391 6527 37978;37979;37980;37981;37982;37983;37984 45624;45625;45626;45627;45628;45629;45630;45631;45632;45633;45634 45626 11 GLIVYQLENQPSEFR Unmodified 1791.9155 0.91554867 1431 P78406 RAE1 mRNA export factor yes yes 0 0 0 0 By MS/MS By MS/MS 5.78 0.916 1 2 4 2 5 4 69.208 69.238 2;3 7.3155E-52 21740 20211116_3445_TMUAki_TMT10x_S_F6 293.62 248.45 27057000 46820000 194610 43096000 32902000 39163000 31852000 33021000 29671000 32275000 35280000 25193000 43674000 2374100 44169000 31525000 40001000 32296000 33861000 30480000 31552000 33860000 11 11 5 11 11 11 11 11 11 11 11 11419000 19251000 25051 17403000 12763000 22683000 13995000 13755000 12487000 13377000 14227000 10631000 17956000 915040 17964000 12265000 22582000 14085000 14424000 12831000 13080000 13671000 5 5 1 5 5 5 5 5 5 5 5 15638000 27569000 169560 25693000 20139000 16480000 17856000 19266000 17184000 18898000 21053000 14562000 25718000 1459100 26205000 19259000 17420000 18211000 19437000 17649000 18472000 20189000 6 6 4 6 6 6 6 6 6 6 6 4876300000 2269600000 2606700000 7006 1431 6528 37985;37986;37987;37988;37989;37990;37991;37992;37993 45635;45636;45637;45638;45639;45640;45641;45642;45643;45644;45645;45646 45645 12 GLIVYQLENQPSEFRR Unmodified 1948.0167 0.016659702 1431 P78406 RAE1 mRNA export factor yes yes 0 0 0 1 By MS/MS By MS/MS 7.6 0.49 2 3 2 3 57.949 58.225 3;4 1.5695E-29 16912 20211116_3447_TMUAki_TMT10x_S_F8 196.22 153.41 71204000 116030000 1385800 136430000 105530000 95855000 84681000 62597000 55196000 64983000 89758000 66308000 108350000 7624800 137140000 100740000 99406000 86072000 65394000 58669000 63367000 85516000 7 7 5 7 7 7 7 7 7 7 7 32431000 51108000 384410 60179000 68174000 66212000 53102000 27597000 23862000 26962000 39918000 30199000 47723000 3497300 60842000 65010000 66213000 53747000 29988000 26124000 26359000 38010000 3 3 2 3 3 3 3 3 3 3 3 38773000 64925000 1001400 76254000 37352000 29642000 31579000 35001000 31335000 38021000 49840000 36109000 60624000 4127500 76294000 35730000 33193000 32326000 35406000 32545000 37009000 47506000 4 4 3 4 4 4 4 4 4 4 4 9198300000 4402900000 4795300000 7007 1431 6529 37994;37995;37996;37997;37998 45647;45648;45649;45650;45651;45652;45653 45652 7 GLKAELMER Oxidation (M) 1061.5539 0.55392962 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 1 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.799 35.853 3 0.0081478 7676 20211116_3444_TMUAki_TMT10x_S_F5 63.426 42.48 5105900 8118200 0 5337700 9718100 10520000 5949800 8038700 8329400 7284000 7378200 4754000 7564800 483510 5719200 9223200 10342000 6305800 8275800 8335900 7145100 7146900 3 3 0 3 3 3 3 3 3 3 3 4230400 6606300 0 4252200 8435300 9436700 4877400 6508800 6715700 5850900 5980400 3938900 6155600 407020 4581800 7998600 9227900 5190300 6745700 6725500 5741400 5791800 2 2 0 2 2 2 2 2 2 2 2 875500 1511900 0 1085500 1282800 1083700 1072400 1529900 1613800 1433200 1397800 815160 1409200 76487 1137400 1224600 1114200 1115600 1530100 1610400 1403700 1355100 1 1 0 1 1 1 1 1 1 1 1 853730000 650760000 202970000 7008 1474 6530 37999;38000;38001 45654;45655;45656 45656 1992 3 GLKAELMER Unmodified 1045.559 0.559015 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 1 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 41.449 41.665 3 0.00097741 10432 20211116_3445_TMUAki_TMT10x_S_F6 92.866 53.562 14693000 22340000 82919 20441000 29915000 18378000 17921000 9668100 8310900 10018000 17956000 13680000 20838000 1428000 20957000 28383000 18654000 18508000 10280000 9217700 9769300 17023000 7 7 3 7 7 7 7 7 7 7 7 8480200 12434000 56789 11754000 22212000 14020000 11471000 5515000 4959000 5656000 10252000 7895900 11600000 898070 12073000 21028000 13952000 11995000 6040700 5517700 5518100 9725500 3 3 2 3 3 3 3 3 3 3 3 6212300 9906100 26131 8687600 7703500 4358000 6450100 4153100 3351900 4361600 7704500 5784200 9238800 529960 8884100 7354500 4702100 6512200 4239200 3700000 4251200 7297500 4 4 1 4 4 4 4 4 4 4 4 719580000 559540000 160040000 7009 1474 6530 38002;38003;38004;38005;38006 45657;45658;45659;45660;45661;45662;45663;45664 45662 8 GLKPSCTIIPLMK Oxidation (M) 1472.8095 0.80949238 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 1 1 By MS/MS By MS/MS 3.5 0.5 2 2 3 1 54.326 54.415 3 0.0011163 16132 20211116_3431_TMUAki_TMT10x_P_F4 77.185 60.553 12616000 21120000 223870 22318000 13024000 15501000 10541000 18287000 17001000 16474000 16442000 11749000 19712000 1250300 22582000 12438000 16275000 11022000 18398000 16993000 16164000 15879000 3 3 2 3 3 3 3 3 3 3 3 3425500 5244200 0 5885300 6365600 7906100 4176100 4481000 4264900 4340600 4216300 3189400 4895800 315150 5988900 6047900 7852600 4353200 4724600 4333200 4245100 4068800 1 1 0 1 1 1 1 1 1 1 1 9191000 15876000 223870 16433000 6658000 7595400 6364500 13806000 12736000 12134000 12226000 8559400 14816000 935160 16593000 6390200 8422300 6668400 13674000 12660000 11919000 11810000 2 2 2 2 2 2 2 2 2 2 2 1395500000 707320000 688210000 7010 1092 6531 38007;38008;38009;38010 45665;45666;45667;45668;45669 45667 1425 5 GLKPSCTIIPLMK Unmodified 1456.8146 0.81457776 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 61.083 61.209 3 5.8479E-05 19199 20211116_3433_TMUAki_TMT10x_P_F5 97.86 79.496 89386000 138080000 275830 156420000 95259000 94605000 84946000 47960000 40273000 51391000 85738000 83227000 128910000 7443200 157360000 91076000 99142000 85321000 51219000 44539000 50050000 81301000 7 7 3 7 7 7 7 7 7 7 7 52029000 79418000 275830 91037000 67001000 73713000 59467000 30036000 25707000 31679000 50794000 48446000 74149000 4702000 91793000 64066000 75181000 59669000 32792000 28520000 30872000 48223000 4 4 3 4 4 4 4 4 4 4 4 37357000 58665000 0 65388000 28258000 20893000 25479000 17924000 14566000 19712000 34944000 34781000 54766000 2741200 65566000 27011000 23962000 25652000 18428000 16019000 19178000 33078000 3 3 0 3 3 3 3 3 3 3 3 2338600000 1433400000 905200000 7011 1092 6531 38011;38012;38013;38014 45670;45671;45672;45673;45674;45675;45676;45677 45673 8 GLKVDLAQR Unmodified 998.58728 0.58727866 1874 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 37.314 37.698 3 0.09953 10417 20211116_3435_TMUAki_TMT10x_P_F7 36.514 15.142 8626900 14045000 103210 11999000 12422000 12620000 9920400 11659000 12242000 10020000 11876000 8033100 13098000 834600 12395000 11853000 12796000 10265000 11854000 12340000 9853700 11468000 6 6 4 6 6 6 6 6 6 6 6 4294700 6763400 56988 6016400 7538300 8751700 5363700 5147800 5670200 4583400 5616700 3999100 6308200 440820 6231400 7176000 8666000 5563800 5398900 5753100 4499600 5419900 3 3 2 3 3 3 3 3 3 3 3 4332200 7281800 46224 5982600 4884100 3868200 4556600 6511200 6572300 5436700 6259700 4034000 6789900 393770 6163400 4676600 4130500 4701500 6454600 6586900 5354100 6048200 3 3 2 3 3 3 3 3 3 3 3 144700000 110080000 34618000 7012 1874 6532 38015;38016;38017 45678 45678 1 GLKYELISETGGSHDKR Unmodified 1888.9643 0.96428978 1576;2556 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3;Q96SI9;Q96SI9-2 ILF3;STRBP Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein no no 0 0 0 2 By MS/MS 7 0 1 1 41.047 41.495 5 3.2838E-05 11948 20211116_3435_TMUAki_TMT10x_P_F7 85.636 73.47 1308400 2192200 0 1756800 4321900 5542800 2489100 3348000 3442100 2982300 2444200 1218100 2043900 128940 1879600 4096500 5363700 2650100 3503800 3424600 2927700 2388700 1 1 0 1 1 1 1 1 1 1 1 1308400 2192200 0 1756800 4321900 5542800 2489100 3348000 3442100 2982300 2444200 1218100 2043900 128940 1879600 4096500 5363700 2650100 3503800 3424600 2927700 2388700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 719560000 719560000 0 7013 1576;2556 6533 38018 45679 45679 1 GLLALGDYMNVQCHACIGGTNVGEDIR Oxidation (M) 2948.3579 0.35789571 973 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 0 0 1 0 By MS/MS By MS/MS 6 0 2 1 1 65.375 65.351 3 6.2455E-42 19748 20211116_3434_TMUAki_TMT10x_P_F6 183.07 174.85 3081900 5712800 5732.3 4260500 3860700 4968700 3792300 4480000 3676700 4639300 4097200 2869100 5325300 214110 4459600 3696700 5007100 3846700 4584400 3760400 4524500 3939400 3 3 1 3 3 3 3 3 3 3 3 822510 1583500 5732.3 1256800 866570 1972000 978000 1283400 1050700 1258100 1268800 765880 1476400 74151 1315900 834050 1949300 988450 1338900 1073500 1229800 1217200 1 1 1 1 1 1 1 1 1 1 1 2259300 4129300 0 3003700 2994100 2996700 2814300 3196600 2626000 3381200 2828400 2103200 3848900 139960 3143700 2862600 3057800 2858200 3245500 2687000 3294700 2722200 2 2 0 2 2 2 2 2 2 2 2 1283500000 568530000 714950000 7014 973 6534 38019;38020 45680;45681;45682 45680 1244 3 GLLALGDYMNVQCHACIGGTNVGEDIRK Oxidation (M) 3076.4529 0.45285873 973 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 0 0 1 1 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 60.557 60.922 4 3.6054E-33 19765 20211116_3435_TMUAki_TMT10x_P_F7 163.71 141.59 10229000 18289000 286960 16024000 12759000 23221000 12812000 15039000 13496000 15670000 14990000 9526400 17058000 1150900 16615000 12253000 23028000 13014000 15723000 13753000 15278000 14414000 3 3 3 3 3 3 3 3 3 3 3 8040900 13784000 160380 12262000 9383100 19956000 9991900 11320000 9927800 11713000 11182000 7488100 12856000 834910 12732000 9022000 19661000 10101000 11957000 10147000 11423000 10748000 2 2 2 2 2 2 2 2 2 2 2 2188200 4505300 126570 3761600 3375900 3265300 2820100 3719600 3568000 3957200 3808600 2038400 4201200 316020 3882600 3230600 3367300 2912800 3766000 3605600 3855000 3666500 1 1 1 1 1 1 1 1 1 1 1 2063900000 1402100000 661810000 7015 973 6535 38021;38022 45683;45684;45685 45684 1244 3 GLLALGDYMNVQCHACIGGTNVGEDIRK Unmodified 3060.4579 0.45794411 973 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 0 0 0 1 By MS/MS By matching 7.67 0.471 1 2 2 1 68.157 68.325 4 4.3894E-06 21581 20211116_3436_TMUAki_TMT10x_P_F8 72.881 69.234 5131000 8133000 0 8831500 5871500 9089500 6687200 5193900 4468200 5035300 6230400 4777200 7591600 397970 8964100 5647900 9156400 6671700 5472700 4705300 4924300 5955700 1 1 0 1 1 1 1 1 1 1 1 5131000 8133000 0 8831500 5871500 9089500 6687200 5193900 4468200 5035300 6230400 4777200 7591600 397970 8964100 5647900 9156400 6671700 5472700 4705300 4924300 5955700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2329300000 1405600000 923710000 7016 973 6535 38023;38024;38025 45686 45686 1 GLLAPEAGR Unmodified 882.49232 0.49231565 2274 Q8TD16;Q8TD16-2 BICD2 Protein bicaudal D homolog 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 37.048 37.127 2 0.002084 9556 20211116_3442_TMUAki_TMT10x_S_F4 89.752 46.506 459580 651570 9664.7 811130 730540 551460 457920 386820 404360 374280 521100 427990 608580 50905 812330 694210 574110 477080 401220 417850 366060 499070 2 2 2 2 2 2 2 2 2 2 2 221170 289480 2626.3 379650 519970 377990 245270 230150 250550 213740 259770 205950 270460 24969 380920 491830 381860 263320 240970 254990 209420 250310 1 1 1 1 1 1 1 1 1 1 1 238410 362090 7038.3 431480 210570 173470 212650 156670 153810 160540 261330 222040 338130 25935 431420 202380 192250 213770 160260 162860 156630 248760 1 1 1 1 1 1 1 1 1 1 1 13510000 7230400 6279200 7017 2274 6536 38026;38027 45687 45687 1 GLLDDLRNDLDR Unmodified 1413.7212 0.72120596 1536 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 65.458 65.253 3 7.0295E-18 23332 20211116_3441_TMUAki_TMT10x_S_F3 217.88 186.89 18748000 29746000 93718 27593000 18770000 31806000 22975000 18500000 20503000 21415000 24278000 17456000 27748000 1490800 28365000 18099000 31843000 23008000 19569000 21100000 20795000 23303000 8 8 4 8 8 8 8 8 8 8 8 11727000 18596000 65143 17230000 12147000 22882000 14352000 11507000 12956000 13665000 15155000 10919000 17347000 963900 17758000 11701000 22706000 14400000 12338000 13320000 13257000 14552000 5 5 3 5 5 5 5 5 5 5 5 7021200 11150000 28575 10364000 6623300 8924800 8622400 6993600 7547000 7750500 9122100 6537000 10401000 526870 10607000 6397700 9137400 8608300 7230700 7780700 7538300 8751000 3 3 1 3 3 3 3 3 3 3 3 3615600000 1861600000 1754000000 7018 1536 6537 38028;38029;38030;38031;38032;38033;38034;38035 45688;45689;45690;45691;45692;45693;45694;45695;45696 45695 9 GLLDVTCK Unmodified 904.4688 0.46880301 1402 P63208;P63208-2 SKP1 S-phase kinase-associated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 52.267 52.44 2 0.00081061 14780 20211116_3445_TMUAki_TMT10x_S_F6 133.55 56.49 12535000 20319000 204290 24585000 11267000 11098000 11302000 13785000 12939000 13197000 18427000 11673000 18976000 1211900 24578000 10816000 12198000 11513000 13863000 13286000 12913000 17606000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12535000 20319000 204290 24585000 11267000 11098000 11302000 13785000 12939000 13197000 18427000 11673000 18976000 1211900 24578000 10816000 12198000 11513000 13863000 13286000 12913000 17606000 3 3 3 3 3 3 3 3 3 3 3 456380000 181470000 274910000 7019 1402 6538 38036;38037;38038;38039 45697;45698;45699;45700 45700 4 GLLEESSFATLFPK Unmodified 1537.8028 0.80281033 1652 Q13601;Q13601-2 KRR1 KRR1 small subunit processome component homolog yes no 0 0 0 0 By MS/MS By MS/MS 6.71 0.452 2 5 3 4 79.13 79.166 2;3 4.91E-10 25734 20211116_3445_TMUAki_TMT10x_S_F6 118.87 94.879 4873300 8279400 179980 7392100 5670200 8148600 6229300 5653700 4830900 5606700 6725300 4538900 7722200 582930 7615200 5461800 8198500 6246100 5872800 5043000 5477700 6429000 2 2 2 2 2 2 2 2 2 2 2 2964300 4761100 120570 4350300 2896300 5518800 3152500 3019200 2554800 2904800 3723100 2760900 4441000 357180 4484500 2790900 5494000 3165800 3192500 2666700 2841700 3555400 1 1 1 1 1 1 1 1 1 1 1 1909100 3518300 59411 3041800 2773800 2629800 3076800 2634500 2276100 2701900 3002200 1778000 3281200 225760 3130700 2670900 2704600 3080300 2680300 2376400 2636000 2873600 1 1 1 1 1 1 1 1 1 1 1 2489800000 1041400000 1448300000 7020 1652 6539 38040;38041;38042;38043;38044;38045;38046 45701;45702;45703;45704 45702 4 GLLEFEHQR Unmodified 1127.5724 0.57235688 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 By MS/MS By MS/MS 3.56 1.62 2 2 4 4 2 1 1 8 8 39.993 40.023 2;3 2.2597E-06 11686 20211116_3429_TMUAki_TMT10x_P_F2 160.59 125.87 16612000 26022000 56183 30370000 31136000 27768000 19742000 22392000 24188000 19614000 24526000 15466000 24298000 1433500 30636000 29558000 28328000 20758000 22954000 24424000 19270000 23649000 15 15 7 15 15 15 15 15 15 15 15 10014000 15094000 28503 17320000 24780000 22360000 13714000 12470000 13640000 11085000 13877000 9323200 14093000 916380 17587000 23474000 22246000 14487000 13136000 13888000 10883000 13379000 7 7 3 7 7 7 7 7 7 7 7 6597500 10928000 27681 13050000 6356100 5407600 6027600 9921800 10547000 8529200 10649000 6142700 10205000 517090 13049000 6084600 6081700 6271100 9818300 10536000 8387400 10270000 8 8 4 8 8 8 8 8 8 8 8 5533300000 3726900000 1806300000 7021 1730 6540 38047;38048;38049;38050;38051;38052;38053;38054;38055;38056;38057;38058;38059;38060;38061;38062 45705;45706;45707;45708;45709;45710;45711;45712;45713;45714;45715;45716;45717;45718;45719;45720 45706 16 GLLGCNIIPLQR Unmodified 1352.7598 0.75984008 75 O00233;O00233-3 PSMD9 26S proteasome non-ATPase regulatory subunit 9 yes no 0 0 0 0 By MS/MS By MS/MS 3.17 0.687 1 3 2 2 4 66.996 66.687 2;3 6.22E-18 21198 20211116_3431_TMUAki_TMT10x_P_F4 189.7 148.2 11510000 20289000 105980 18594000 14448000 15317000 13926000 13017000 11202000 12923000 15423000 10717000 18925000 973970 19040000 13839000 15755000 14069000 13348000 11665000 12625000 14747000 3 3 2 3 3 3 3 3 3 3 3 3310600 5782800 0 5847800 4112300 7193300 4932000 4155300 3393000 4111900 4908400 3081600 5396200 165480 5981200 3955900 7176800 4912300 4376800 3572900 4017700 4688100 1 1 0 1 1 1 1 1 1 1 1 8199600 14506000 105980 12747000 10335000 8124000 8994300 8861600 7808600 8811500 10514000 7635400 13529000 808490 13059000 9882800 8577900 9156800 8971100 8091800 8607800 10059000 2 2 2 2 2 2 2 2 2 2 2 2519200000 1220200000 1299000000 7022 75 6541 38063;38064;38065;38066;38067;38068 45721;45722;45723;45724;45725;45726 45722 6 GLLGDAPNDPR Unmodified 1123.5622 0.56218613 907 P33240;P33240-2 CSTF2 Cleavage stimulation factor subunit 2 no no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 39.912 39.782 2 1.2131E-05 11597 20211116_3430_TMUAki_TMT10x_P_F3 116.05 62.496 2119600 3085900 1613.9 4218200 2712000 2359000 1788200 2485000 2916900 2168600 3070100 1973400 2883700 173750 4195500 2576500 2520700 1897100 2510800 2923500 2131000 2956900 3 3 1 3 3 3 3 3 3 3 3 597360 840410 1613.9 1063800 1536100 1347700 728950 657040 762280 622580 828130 556170 785020 58794 1073700 1452400 1339900 782640 701860 776370 609460 796830 2 2 1 2 2 2 2 2 2 2 2 1522200 2245500 0 3154500 1175800 1011300 1059200 1828000 2154600 1546100 2242000 1417300 2098700 114960 3121800 1124100 1180800 1114400 1808900 2147100 1521600 2160000 1 1 0 1 1 1 1 1 1 1 1 105270000 41796000 63477000 7023 907 6542 38069;38070 45727;45728;45729 45728 3 GLLGLPEEETELDNLTEFNTAHNK Unmodified 2683.2977 0.29770475 1581 Q12972;Q12972-2 PPP1R8 Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay yes no 0 0 0 0 By MS/MS By matching 2 1.22 2 1 1 3 1 77.28 77.253 3 2.1335E-29 26628 20211116_3429_TMUAki_TMT10x_P_F2 168.79 163.41 9894200 16205000 53211 13682000 8580900 18277000 10989000 8615800 8622300 10342000 11786000 9212600 15112000 686390 14205000 8289700 18119000 10948000 9299300 8987600 10029000 11272000 5 5 2 5 5 5 5 5 5 5 5 9894200 16205000 53211 13682000 8580900 18277000 10989000 8615800 8622300 10342000 11786000 9212600 15112000 686390 14205000 8289700 18119000 10948000 9299300 8987600 10029000 11272000 5 5 2 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3391300000 2445700000 945550000 7024 1581 6543 38071;38072;38073;38074 45730;45731;45732;45733;45734 45733 5 GLLHPQQLHLLSR Unmodified 1510.8732 0.87323035 2011 Q6PJT7;Q6PJT7-5;Q6PJT7-2;Q6PJT7-9 ZC3H14 Zinc finger CCCH domain-containing protein 14 yes no 0 0 0 0 By MS/MS By matching 3 0 2 1 1 44.651 44.5 4 1.7715E-12 13686 20211116_3430_TMUAki_TMT10x_P_F3 158.34 130.16 153740 243900 3318.5 258730 317170 375560 220820 217840 193150 198810 214670 143170 227640 18128 264650 301890 371840 228170 228870 198470 194950 206420 1 1 1 1 1 1 1 1 1 1 1 153740 243900 3318.5 258730 317170 375560 220820 217840 193150 198810 214670 143170 227640 18128 264650 301890 371840 228170 228870 198470 194950 206420 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 132910000 65024000 67890000 7025 2011 6544 38075;38076 45735 45735 1 GLLHSFDLLK Unmodified 1141.6495 0.64954457 2723 Q9BY44;Q9BY44-3;Q9BY44-4 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes no 0 0 0 0 By MS/MS 1 0 1 1 66.88 66.657 3 1.8033E-05 22872 20211116_3439_TMUAki_TMT10x_S_F1 132.88 88.48 1270600 2205700 25760 2006100 1422900 1260900 1273500 1443200 1182100 1415800 1631700 1183200 2057400 131480 2049500 1362100 1334600 1296700 1457300 1222500 1383900 1560100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1270600 2205700 25760 2006100 1422900 1260900 1273500 1443200 1182100 1415800 1631700 1183200 2057400 131480 2049500 1362100 1334600 1296700 1457300 1222500 1383900 1560100 1 1 1 1 1 1 1 1 1 1 1 221710000 0 221710000 7026 2723 6545 38077 45736 45736 1 GLLKPGLNVVLEGPK Unmodified 1532.929 0.92901389 2610 Q99848 EBNA1BP2 Probable rRNA-processing protein EBP2 yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 66.211 65.857 3 3.5008E-19 22535 20211116_3430_TMUAki_TMT10x_P_F3 161.84 153.11 28462000 42491000 184470 39407000 31260000 46579000 33660000 39870000 32608000 32271000 36034000 26502000 39637000 2570800 40527000 30045000 46859000 33985000 40649000 33341000 31831000 34654000 4 4 4 4 4 4 4 4 4 4 4 21606000 30727000 172090 28571000 22980000 38241000 25412000 28119000 23199000 22562000 26687000 20118000 28664000 1970900 29444000 22106000 38134000 25580000 28934000 23822000 22264000 25636000 3 3 3 3 3 3 3 3 3 3 3 6856500 11764000 12373 10836000 8280000 8338100 8248900 11751000 9408700 9709800 9346900 6384200 10974000 599920 11083000 7939200 8725100 8404700 11715000 9518800 9567200 9018600 1 1 1 1 1 1 1 1 1 1 1 3954100000 2581700000 1372400000 7027 2610 6546 38078;38079;38080;38081 45737;45738;45739;45740;45741 45739 5 GLLKPGLNVVLEGPKK Unmodified 1661.024 0.023976912 2610 Q99848 EBNA1BP2 Probable rRNA-processing protein EBP2 yes yes 0 0 0 2 By MS/MS By MS/MS 4 0 2 1 1 59.474 59.484 4 5.8574E-15 18752 20211116_3442_TMUAki_TMT10x_S_F4 150.59 138.28 28496000 47777000 156000 49800000 42950000 52524000 37777000 33855000 39576000 35240000 37202000 26530000 44588000 2241100 50702000 41032000 52920000 38645000 35405000 40099000 34361000 35961000 2 2 1 2 2 2 2 2 2 2 2 17951000 30773000 0 32803000 31882000 42604000 28001000 21448000 24904000 22474000 23526000 16710000 28722000 1214100 33467000 30442000 42322000 28509000 22906000 25422000 21907000 22737000 1 1 0 1 1 1 1 1 1 1 1 10545000 17004000 156000 16997000 11068000 9919300 9776200 12406000 14672000 12766000 13677000 9819700 15867000 1027000 17234000 10590000 10598000 10136000 12499000 14677000 12453000 13224000 1 1 1 1 1 1 1 1 1 1 1 4293200000 2716500000 1576700000 7028 2610 6547 38082;38083 45742;45743 45743 2 GLLLRGDR Unmodified 898.53485 0.53484916 2513 Q96KR1;Q9UPR6 ZFR;ZFR2 Zinc finger RNA-binding protein;Zinc finger RNA-binding protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 33.292 33.297 3 0.058812 9257 20211116_3439_TMUAki_TMT10x_S_F1 45.972 13.16 1631500 2468100 42860 2918800 2034100 2189700 1775000 1531600 1560500 1490300 2074500 1519400 2304700 180850 2934900 1946500 2260900 1807400 1589200 1615200 1457200 1985300 2 2 2 2 2 2 2 2 2 2 2 781660 1117700 17747 1343200 1184700 1308700 839240 666990 761600 672230 925250 727940 1043700 86990 1353800 1128400 1320900 866940 710700 784000 656320 887490 1 1 1 1 1 1 1 1 1 1 1 849880 1350400 25113 1575600 849390 880980 935760 864570 798920 818070 1149200 791510 1260900 93859 1581100 818120 939960 940430 878470 831180 800890 1097800 1 1 1 1 1 1 1 1 1 1 1 39381000 17435000 21945000 7029 2513 6548 38084;38085 45744;45745 45745 2 GLLLTGHEDGTVR Unmodified 1366.7205 0.72047768 1788 Q15334 LLGL1 Lethal(2) giant larvae protein homolog 1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 38.129 38.286 3 6.8286E-06 10102 20211116_3442_TMUAki_TMT10x_S_F4 95.264 64.037 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7030 1788 6549 38086 45746 45746 1 GLLLYGPPGTGK Unmodified 1171.6601 0.66010926 2168 Q8IYT4;Q8IYT4-2 KATNAL2 Katanin p60 ATPase-containing subunit A-like 2 yes no 0 0 0 0 By MS/MS By MS/MS 2.86 2.23 4 4 4 2 7 7 61.096 60.882 2;3 3.1135E-20 21550 20211116_3441_TMUAki_TMT10x_S_F3 236.56 0 115180000 193260000 1127200 198960000 152050000 181570000 129070000 141530000 141720000 137530000 150800000 107250000 180350000 10065000 202310000 145210000 185140000 132510000 145800000 143940000 134480000 145190000 18 18 6 18 18 18 18 18 18 18 18 61362000 101880000 438540 105370000 95704000 131760000 82166000 75103000 75343000 73626000 80024000 57135000 95078000 5663600 107650000 91431000 131330000 83841000 79175000 77114000 71968000 77051000 8 8 3 8 8 8 8 8 8 8 8 53820000 91381000 688700 93582000 56342000 49810000 46904000 66426000 66372000 63901000 70780000 50111000 85276000 4401500 94659000 53780000 53816000 48673000 66623000 66827000 62513000 68142000 10 10 3 10 10 10 10 10 10 10 10 23986000000 13701000000 10284000000 7031 2168 6550 38087;38088;38089;38090;38091;38092;38093;38094;38095;38096;38097;38098;38099;38100 45747;45748;45749;45750;45751;45752;45753;45754;45755;45756;45757;45758;45759;45760;45761;45762;45763;45764;45765 45761 19 GLLPEELTPLILATQK Unmodified 1735.0131 0.013137454 659 P13804;P13804-2 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 6.25 2.45 2 2 3 5 6 6 80.462 80.463 2;3 2.7834E-52 28021 20211116_3435_TMUAki_TMT10x_P_F7 263.74 221.74 27127000 44740000 223040 44488000 27712000 33900000 30292000 17934000 15112000 20310000 29607000 25259000 41746000 2370700 45245000 26644000 34829000 30121000 19111000 16552000 19738000 28112000 8 8 5 8 8 8 8 8 8 8 8 16283000 26518000 219820 26343000 12707000 20538000 15458000 10134000 8522000 12092000 17517000 15163000 24743000 1466300 26800000 12264000 21047000 15321000 10888000 9292400 11729000 16620000 5 5 4 5 5 5 5 5 5 5 5 10844000 18222000 3222.5 18145000 15005000 13361000 14834000 7799200 6589800 8218200 12089000 10096000 17003000 904390 18445000 14380000 13782000 14801000 8222900 7259900 8009000 11492000 3 3 1 3 3 3 3 3 3 3 3 12784000000 6507200000 6277200000 7032 659 6551 38101;38102;38103;38104;38105;38106;38107;38108;38109;38110;38111;38112 45766;45767;45768;45769;45770;45771;45772;45773;45774 45767 9 GLLPGCVYHVQLK Unmodified 1482.8017 0.80170489 1422 Q5JPE7;Q15155;P69849;Q5JPE7-2;Q5JPE7-3 NOMO2;NOMO1;NOMO3 Nodal modulator 2;Nodal modulator 1;Nodal modulator 3 yes no 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 58.159 57.91 3 6.8446E-07 19364 20211116_3430_TMUAki_TMT10x_P_F3 118.28 98.44 10188000 16636000 248320 18625000 15868000 21332000 13787000 11915000 9657100 10987000 13082000 9487500 15530000 1155600 18901000 15178000 21353000 13966000 12562000 10127000 10769000 12513000 2 2 2 2 2 2 2 2 2 2 2 10188000 16636000 248320 18625000 15868000 21332000 13787000 11915000 9657100 10987000 13082000 9487500 15530000 1155600 18901000 15178000 21353000 13966000 12562000 10127000 10769000 12513000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1163500000 1163500000 0 7033 1422 6552 38113;38114 45775;45776 45776 2 GLLPGLLPAPADKLTPK Unmodified 1700.0236 0.023642561 1995 Q6P2E9;Q6P2E9-2 EDC4 Enhancer of mRNA-decapping protein 4 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 73.167 73.02 3 8.9944E-11 25441 20211116_3430_TMUAki_TMT10x_P_F3 125.52 106.69 25611000 42845000 399200 36459000 31692000 45476000 32193000 35994000 34775000 34961000 35134000 23850000 39955000 2575200 37780000 30424000 45559000 32709000 37044000 35278000 34187000 33881000 8 8 7 8 8 8 8 8 8 8 8 14506000 24221000 122570 20556000 16753000 31671000 19008000 20012000 19575000 19586000 20079000 13507000 22587000 1342900 21396000 16127000 31317000 19180000 20922000 19907000 19146000 19353000 4 4 3 4 4 4 4 4 4 4 4 11106000 18624000 276630 15902000 14939000 13805000 13185000 15982000 15200000 15375000 15055000 10343000 17368000 1232200 16384000 14297000 14241000 13528000 16122000 15371000 15041000 14528000 4 4 4 4 4 4 4 4 4 4 4 3026100000 1479500000 1546600000 7034 1995 6553 38115;38116;38117;38118 45777;45778;45779;45780;45781;45782;45783;45784 45777 8 GLLPQLLGVAPEK Unmodified 1333.7969 0.79693709 3141 Q9UJS0;Q9UJS0-2 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes no 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 77.675 77.642 3 1.1071E-12 25435 20211116_3436_TMUAki_TMT10x_P_F8 131.69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7035 3141 6554 38119;38120;38121 45785;45786;45787 45785 3 GLLQSGQIPGR Unmodified 1124.6302 0.63020611 584 P09661 SNRPA1 U2 small nuclear ribonucleoprotein A' yes yes 0 0 0 0 By MS/MS By MS/MS 5 3.29 2 1 2 2 3 43.707 43.811 2 6.8857E-08 11522 20211116_3428_TMUAki_TMT10x_P_F1 142 82.398 10689000 18391000 118620 23732000 17857000 18019000 12381000 16359000 19083000 15599000 17440000 9952400 17181000 1003100 23748000 16986000 18672000 13052000 16694000 19063000 15266000 16875000 6 6 4 6 6 6 6 6 6 6 6 4768400 7567400 113110 9958600 13220000 12593000 7068100 6869200 8569800 6337300 7408400 4440700 7070100 619120 10030000 12528000 12537000 7537700 7257100 8611300 6211200 7182600 3 3 3 3 3 3 3 3 3 3 3 5920300 10824000 5509.6 13774000 4637500 5426800 5312700 9489800 10514000 9261800 10032000 5511700 10111000 383960 13718000 4457800 6134600 5514600 9436700 10451000 9055000 9692400 3 3 1 3 3 3 3 3 3 3 3 759990000 542500000 217490000 7036 584 6555 38122;38123;38124;38125;38126 45788;45789;45790;45791;45792 45788 5 GLLQSGQIPGRER Unmodified 1409.7739 0.77391024 584 P09661 SNRPA1 U2 small nuclear ribonucleoprotein A' yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 36.075 36.058 3 2.3592E-09 8403 20211116_3428_TMUAki_TMT10x_P_F1 132.97 99.091 745030 1025700 18738 1496300 1221200 1156300 690330 1020900 1190700 763760 1095400 693840 958820 85901 1488100 1158700 1195900 743480 1037100 1186000 756520 1059700 2 2 2 2 2 2 2 2 2 2 2 337840 458920 6100.9 659780 888650 877970 409550 509820 589020 382010 554350 314600 428970 41409 662160 840410 872680 446030 533110 590140 378350 535830 1 1 1 1 1 1 1 1 1 1 1 407190 566750 12637 836490 332560 278360 280780 511070 601640 381750 541090 379230 529850 44491 825960 318340 323230 297450 504010 595880 378170 523840 1 1 1 1 1 1 1 1 1 1 1 109020000 63546000 45478000 7037 584 6556 38127;38128 45793;45794 45793 2 GLLSDSMTDVPVDTGVAAR Unmodified 1902.9357 0.93569177 214 O43399;O43399-2;O43399-4;O43399-3;O43399-5;O43399-7 TPD52L2 Tumor protein D54 yes no 0 0 0 0 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 65.866 65.559 3 1.131E-17 21247 20211116_3442_TMUAki_TMT10x_S_F4 146.86 136.81 17739000 29342000 109650 29686000 21018000 22241000 20520000 12284000 11250000 13574000 20437000 16517000 27380000 1543800 30149000 20142000 22894000 20553000 13031000 12176000 13204000 19431000 5 5 4 5 5 5 5 5 5 5 5 9066300 14148000 8225.5 14354000 10832000 14454000 11836000 5633600 5127200 6224800 10077000 8441100 13203000 709050 14630000 10407000 14521000 11745000 6190700 5685200 6055100 9567900 2 2 1 2 2 2 2 2 2 2 2 8672500 15193000 101430 15332000 10186000 7787100 8684100 6650600 6122600 7348800 10360000 8075700 14178000 834730 15519000 9735100 8372900 8807900 6840100 6491100 7148400 9862800 3 3 3 3 3 3 3 3 3 3 3 1887300000 708640000 1178700000 7038 214 6557 38129;38130;38131;38132 45795;45796;45797;45798;45799 45799 5 GLLSDSMTDVPVDTGVAAR Oxidation (M) 1918.9306 0.93060639 214 O43399;O43399-2;O43399-4;O43399-3;O43399-5;O43399-7 TPD52L2 Tumor protein D54 yes no 0 0 1 0 By MS/MS By MS/MS 3.43 0.495 4 3 3 4 56.21 56.126 2;3 2.9687E-52 19632 20211116_3441_TMUAki_TMT10x_S_F3 205.02 167.33 8974600 15741000 50079 15498000 10410000 11318000 8457600 15336000 14627000 13125000 13405000 8356200 14687000 757990 15766000 9931800 11878000 8871900 15323000 14567000 12910000 12969000 6 6 2 6 6 6 6 6 6 6 6 1155400 1912800 19755 1801700 1644900 3308600 1678600 2015800 2364500 2101000 1849100 1075900 1784400 121060 1868400 1579200 3248600 1722100 2117400 2357200 2048500 1799700 1 1 1 1 1 1 1 1 1 1 1 7819200 13828000 30324 13697000 8764800 8008900 6779000 13320000 12262000 11024000 11556000 7280300 12902000 636930 13897000 8352600 8629100 7149800 13206000 12210000 10862000 11169000 5 5 1 5 5 5 5 5 5 5 5 2491500000 627150000 1864400000 7039 214 6557 38133;38134;38135;38136;38137;38138;38139 45800;45801;45802;45803;45804;45805;45806;45807;45808 45805 172 9 GLLSILRK Unmodified 898.59639 0.59638679 947 P36405 ARL3 ADP-ribosylation factor-like protein 3 yes yes 0 0 0 1 By MS/MS 5 0 1 1 57.282 57.421 3 0.0012255 16551 20211116_3444_TMUAki_TMT10x_S_F5 98.933 24.447 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7040 947 6558 38140 45809 45809 1 GLLSIRYPMEHGIVK Oxidation (M) 1727.9393 0.939261 1298 P61163 ACTR1A Alpha-centractin yes yes 0 0 1 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 49.875 49.625 4 0.00010653 15388 20211116_3429_TMUAki_TMT10x_P_F2 85.28 47.091 8548400 13089000 133660 17927000 11745000 11129000 7983700 8307200 8628500 8231700 10994000 7960100 12231000 842740 17845000 11173000 11693000 8314800 8586300 8833700 8042700 10532000 2 2 1 2 2 2 2 2 2 2 2 4359900 6351000 0 9028000 6552700 6826900 4135700 3072200 3433500 3267300 4928200 4059200 5936200 356870 8988100 6220000 7006200 4299700 3319000 3576700 3183000 4707800 1 1 0 1 1 1 1 1 1 1 1 4188500 6737500 133660 8899300 5191900 4301700 3848000 5235000 5195000 4964500 6065500 3900900 6294900 485870 8857400 4952500 4686800 4015200 5267400 5257000 4859700 5824200 1 1 1 1 1 1 1 1 1 1 1 736130000 363300000 372830000 7041 1298 6559 38141;38142;38143 45810;45811 45810 1752 2 GLLVDRPSETK Unmodified 1213.6667 0.6666512 3160 Q9UKV3;Q9UKV3-5;Q9UKV3-2;Q9UKV3-3 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 0 0 0 1 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 36.473 36.514 3 2.3519E-06 9610 20211116_3433_TMUAki_TMT10x_P_F5 120.96 70.919 2302900 3547200 63840 4338700 4619000 3596400 2512100 2459700 2716900 2243900 3136800 2144700 3312900 282380 4359200 4379800 3684100 2664600 2551800 2769900 2200400 3013000 3 3 2 3 3 3 3 3 3 3 3 1354200 2043900 59838 2501200 3792900 2847400 1581100 1403200 1596600 1322400 1799600 1261400 1908900 201720 2524500 3584800 2846900 1719900 1497200 1630800 1294900 1729700 2 2 1 2 2 2 2 2 2 2 2 948650 1503300 4001.5 1837500 826070 749080 931010 1056500 1120300 921480 1337300 883320 1403900 80662 1834600 794950 837150 944740 1054600 1139100 905530 1283300 1 1 1 1 1 1 1 1 1 1 1 134490000 74074000 60418000 7042 3160 6560 38144;38145;38146 45812;45813;45814 45812 3 GLNISAVR Unmodified 828.48175 0.48175096 788 P23588 EIF4B Eukaryotic translation initiation factor 4B yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 37.74 38.422 2 0.024753 11211 20211116_3446_TMUAki_TMT10x_S_F7 67.464 7.0276 732530 1219300 17838 1243600 641600 754670 708730 820120 968280 816100 998460 682190 1137900 76082 1259700 617960 800440 723420 830420 974770 797210 962250 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 732530 1219300 17838 1243600 641600 754670 708730 820120 968280 816100 998460 682190 1137900 76082 1259700 617960 800440 723420 830420 974770 797210 962250 2 2 2 2 2 2 2 2 2 2 2 60754000 0 60754000 7043 788 6561 38147;38148 45815;45816;45817 45817 3 GLNLPTSITSAAFTLR Unmodified 1660.9148 0.91482039 2611 Q99856;Q8IVW6;Q8IVW6-3;Q8IVW6-4 ARID3A;ARID3B AT-rich interactive domain-containing protein 3A;AT-rich interactive domain-containing protein 3B yes no 0 0 0 0 By MS/MS 4 0 1 1 77.872 77.889 2 1.8079E-21 25819 20211116_3431_TMUAki_TMT10x_P_F4 151.54 94.979 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7044 2611 6562 38149 45818 45818 1 GLNSEGLYR Unmodified 1007.5036 0.50360861 688 P15882;P15882-3;P15882-2 CHN1 N-chimaerin yes no 0 0 0 0 By MS/MS 4 0 1 1 35.169 35.276 2 0.10449 8933 20211116_3442_TMUAki_TMT10x_S_F4 55.898 18.175 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7045 688 6563 38150 45819 45819 1 GLPDDHAGPIR Unmodified 1146.5782 0.57817054 2664 Q9BTE6-2;Q9BTE6;Q9BTE6-3 AARSD1 Alanyl-tRNA editing protein Aarsd1 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 32.609 32.375 3 2.7293E-11 9953 20211116_3441_TMUAki_TMT10x_S_F3 163.66 107.11 1268500 1936200 711.16 2025800 2017200 1794700 1509200 1253500 1405200 1234300 1715900 1181100 1807000 116050 2056900 1921400 1830400 1554200 1301300 1445100 1206300 1645600 2 2 1 2 2 2 2 2 2 2 2 594280 819400 711.16 888610 1274700 1108200 695630 553570 680120 538210 798270 553340 764850 59462 904920 1207700 1102900 735400 590370 696780 526280 766410 1 1 1 1 1 1 1 1 1 1 1 674230 1116800 0 1137200 742530 686500 813600 699970 725100 696090 917590 627770 1042200 56591 1152000 713740 727460 818820 710890 748370 680000 879200 1 1 0 1 1 1 1 1 1 1 1 107560000 28203000 79359000 7046 2664 6564 38151;38152 45820;45821 45821 2 GLPFGCSK Unmodified 864.41637 0.41637351 894;893;1247 P31943;P55795;P31942;P31942-2 HNRNPH1;HNRNPH2;HNRNPH3 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2;Heterogeneous nuclear ribonucleoprotein H3 no no 0 0 0 0 By MS/MS 8 0 1 1 47.663 47.768 2 0.0018495 13224 20211116_3436_TMUAki_TMT10x_P_F8 110.81 48.469 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7047 894;1247;893 6565 38153 45822 45822 1 GLPFQANAQDIINFFAPLKPVR Unmodified 2455.3376 0.33759991 1569 Q12849;Q12849-5 GRSF1 G-rich sequence factor 1 yes no 0 0 0 1 By MS/MS By MS/MS 6.88 0.781 3 3 2 3 5 80.998 81.007 3;4 2.186E-55 28641 20211116_3446_TMUAki_TMT10x_S_F7 220.34 213.78 20182000 31981000 92543 29223000 21844000 22147000 22389000 13006000 12310000 13910000 18486000 18790000 29832000 1586000 29902000 20951000 22793000 22369000 13712000 13183000 13548000 17641000 6 6 2 6 6 6 6 6 6 6 6 6397900 10206000 28350 9084300 5285000 8947700 5840400 4344500 4139200 4794600 6022200 5956900 9519100 494470 9344700 5080100 9020300 5842400 4663000 4352200 4664100 5751100 2 2 1 2 2 2 2 2 2 2 2 13784000 21775000 64193 20139000 16559000 13199000 16548000 8661700 8170300 9115500 12463000 12833000 20313000 1091500 20557000 15871000 13773000 16527000 9049200 8830900 8884000 11890000 4 4 1 4 4 4 4 4 4 4 4 6510600000 1360300000 5150300000 7048 1569 6566 38154;38155;38156;38157;38158;38159;38160;38161 45823;45824;45825;45826;45827;45828 45825 6 GLPGDVTNQEVHDLLSDYELK Unmodified 2341.1438 0.14377029 2163 Q8IY67-2;Q8IY67 RAVER1 Ribonucleoprotein PTB-binding 1 yes no 0 0 0 0 By MS/MS 2 0 1 1 77.971 77.921 3 5.6382E-05 26920 20211116_3429_TMUAki_TMT10x_P_F2 69.765 55.724 2643300 4053600 0 3922300 2350800 5127100 3008000 2869700 2628100 3069900 3012500 2461100 3782000 210090 4028700 2270200 5098100 3005100 3037600 2703900 2990000 2894200 1 1 0 1 1 1 1 1 1 1 1 2643300 4053600 0 3922300 2350800 5127100 3008000 2869700 2628100 3069900 3012500 2461100 3782000 210090 4028700 2270200 5098100 3005100 3037600 2703900 2990000 2894200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 962810000 962810000 0 7049 2163 6567 38162 45829 45829 1 GLPPPPR Unmodified 732.42826 0.42825883 1804;1683 Q15424;Q15424-3;Q15424-2;Q15424-4;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 no no 0 0 0 0 By MS/MS 5 0 3 3 30.313 30.43 2 0.020812 4198 20211116_3444_TMUAki_TMT10x_S_F5 82.939 39.971 64722 114920 1550 91875 53349 45985 66923 95526 52370 57219 90115 60274 107150 6651.2 94669 51588 50790 66723 93477 55253 57461 85762 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 64722 114920 1550 91875 53349 45985 66923 95526 52370 57219 90115 60274 107150 6651.2 94669 51588 50790 66723 93477 55253 57461 85762 1 1 1 1 1 1 1 1 1 1 1 464170 0 464170 7050 1804;1683 6568 38163;38164;38165 45830;45831;45832 45831 3 GLPQVKPETASVCSTTLWVGQLDKR Unmodified 2769.4483 0.44834893 404 O95104;O95104-2;O95104-3 SCAF4 Splicing factor, arginine/serine-rich 15 yes no 0 0 0 2 By MS/MS 3 0 1 1 64.91 64.452 4 9.3322E-12 23073 20211116_3441_TMUAki_TMT10x_S_F3 116.74 104.54 4203900 7178000 26056 7844800 5178800 3887900 5053700 3038700 2488100 3337200 5122600 3914500 6700300 386470 7896700 4964100 4185700 5053300 3141300 2737000 3247000 4860100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4203900 7178000 26056 7844800 5178800 3887900 5053700 3038700 2488100 3337200 5122600 3914500 6700300 386470 7896700 4964100 4185700 5053300 3141300 2737000 3247000 4860100 1 1 1 1 1 1 1 1 1 1 1 451140000 0 451140000 7051 404 6569 38166 45833 45833 1 GLPVTCEVAPHHLFLSHDDLER Unmodified 2541.2434 0.24344153 831 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 0 0 0 0 By matching By MS/MS 5.5 0.5 1 1 1 1 49.988 50.159 5 0.019776 13968 20211116_3445_TMUAki_TMT10x_S_F6 42.384 28.552 852720 1371400 0 1440700 869270 687200 763470 1112500 1033400 971690 1166200 793950 1279900 68684 1453600 830690 756110 788310 1105400 1044200 954810 1120900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 852720 1371400 0 1440700 869270 687200 763470 1112500 1033400 971690 1166200 793950 1279900 68684 1453600 830690 756110 788310 1105400 1044200 954810 1120900 1 1 0 1 1 1 1 1 1 1 1 626570000 112920000 513650000 7052 831 6570 38167;38168 45834 45834 1 GLPWSCSADEVQR Unmodified 1503.6776 0.67762659 894 P31943 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 3.85 0.948 1 4 4 4 7 6 50.8 50.809 2;3 3.8272E-78 15090 20211116_3442_TMUAki_TMT10x_S_F4 341.22 273.01 40261000 65517000 504640 78319000 64497000 59313000 48799000 39365000 35836000 38498000 54189000 37488000 61182000 3760800 78710000 61453000 61148000 49918000 41004000 37675000 37635000 51706000 16 16 8 16 16 16 16 16 16 16 16 21259000 33938000 254570 40236000 48761000 47512000 35545000 21624000 19665000 20509000 28713000 19795000 31691000 2246000 40711000 46428000 47372000 36254000 23259000 21022000 20076000 27418000 9 9 4 9 9 9 9 9 9 9 9 19002000 31579000 250070 38083000 15736000 11801000 13254000 17741000 16171000 17989000 25476000 17692000 29491000 1514900 37999000 15025000 13776000 13664000 17745000 16654000 17559000 24288000 7 7 4 7 7 7 7 7 7 7 7 11903000000 7763100000 4139800000 7053 894 6571 38169;38170;38171;38172;38173;38174;38175;38176;38177;38178;38179;38180;38181 45835;45836;45837;45838;45839;45840;45841;45842;45843;45844;45845;45846;45847;45848;45849;45850 45846 16 GLPYLVNEDDVR Unmodified 1388.6936 0.69359423 2161 Q8IXT5 RBM12B RNA-binding protein 12B yes yes 0 0 0 0 By MS/MS 3 0 1 1 58.421 58.01 2 1.9203E-12 20404 20211116_3441_TMUAki_TMT10x_S_F3 143.28 104.5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7054 2161 6572 38182 45851 45851 1 GLQCGAPLSLVDLAGSER Unmodified 1841.9305 0.93054681 2700 Q9BW19 KIFC1 Kinesin-like protein KIFC1 yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 72.512 72.442 3 1.9956E-10 23039 20211116_3445_TMUAki_TMT10x_S_F6 114.99 102.11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7055 2700 6573 38183;38184 45852;45853 45853 2 GLQDVLR Unmodified 799.4552 0.45520186 982 P40227;P40227-2;Q92526;Q92526-2;Q92526-3 CCT6A;CCT6B T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2 yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 44.466 44.621 2 0.033315 12592 20211116_3442_TMUAki_TMT10x_S_F4 78.178 14.877 18440000 30255000 23663 33121000 27787000 24689000 17882000 25655000 25556000 21795000 28121000 17169000 28242000 1630700 33461000 26393000 25693000 18894000 25920000 25754000 21445000 27048000 4 4 1 4 4 4 4 4 4 4 4 6278300 9918900 0 10656000 16165000 14239000 7314100 7336500 7861200 6430700 8962400 5845700 9258100 656990 10873000 15277000 14130000 7898800 7780500 8012500 6317900 8611700 1 1 0 1 1 1 1 1 1 1 1 12161000 20336000 23663 22465000 11622000 10450000 10568000 18319000 17695000 15364000 19158000 11323000 18984000 973660 22588000 11115000 11563000 10995000 18140000 17741000 15127000 18436000 3 3 1 3 3 3 3 3 3 3 3 771000000 356220000 414780000 7056 982 6574 38185;38186;38187 45854;45855;45856;45857 45856 4 GLQEAAEERESAREEEEAEQER Unmodified 2574.143 0.14299502 176 O15240 VGF Neurosecretory protein VGF;Neuroendocrine regulatory peptide-1;Neuroendocrine regulatory peptide-2;Antimicrobial peptide VGF[554-577] yes yes 0 0 0 2 By MS/MS By MS/MS 1 0 2 1 1 33.193 33.199 4 3.6262E-103 7280 20211116_3428_TMUAki_TMT10x_P_F1 334.08 309.14 174670 237510 1255.3 332730 297210 314540 147720 393030 397250 288530 287140 162650 221980 9554.7 332440 281290 323320 165380 392510 389310 286100 280400 2 2 1 2 2 2 2 2 2 2 2 74312 106090 1255.3 159290 233090 257110 105790 201260 191130 125520 139950 69201 99191 9554.7 160210 220370 254640 116610 205180 188890 125710 136590 1 1 1 1 1 1 1 1 1 1 1 100360 131420 0 173430 64114 57429 41931 191760 206120 163010 147190 93445 122780 0 172230 60918 68679 48775 187330 200420 160390 143820 1 1 0 1 1 1 1 1 1 1 1 108770000 59309000 49463000 7057 176 6575 38188;38189 45858;45859 45858 2 GLQEEPVEGFR Unmodified 1259.6146 0.61461563 1099 P49427 CDC34 Ubiquitin-conjugating enzyme E2 R1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 44.966 44.845 2 3.0521E-14 12154 20211116_3440_TMUAki_TMT10x_S_F2 183.07 148.82 7845800 12710000 28192 16301000 11971000 10091000 6922200 12027000 13660000 9479100 12225000 7304800 11874000 656870 16283000 11348000 10706000 7494000 12054000 13551000 9362800 11837000 5 5 2 5 5 5 5 5 5 5 5 3066600 4568200 15266 6053500 8387600 7228300 4090700 3696000 4321200 2880900 4195600 2855300 4268200 329830 6088200 7934500 7211900 4381200 3911700 4381500 2847200 4051200 2 2 1 2 2 2 2 2 2 2 2 4779300 8142200 12927 10247000 3583500 2862500 2831400 8330800 9338400 6598200 8029000 4449500 7605400 327040 10195000 3413700 3494500 3112800 8142400 9169000 6515500 7785800 3 3 1 3 3 3 3 3 3 3 3 565300000 377210000 188090000 7058 1099 6576 38190;38191;38192;38193;38194 45860;45861;45862;45863;45864 45863 5 GLQEVGLPLHR Unmodified 1217.6881 0.68805534 618 P11172;P11172-2;P11172-3 UMPS Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase yes no 0 0 0 0 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 44.651 44.856 3 1.1934E-06 11358 20211116_3434_TMUAki_TMT10x_P_F6 123.01 99.284 4196900 7397400 26882 7098300 5386600 4586300 4202900 5366300 5026100 4238000 5933000 3907800 6901500 366270 7225000 5135300 4844700 4350500 5382900 5109300 4185500 5695300 4 4 2 4 4 4 4 4 4 4 4 842640 1427500 17231 1478800 1711400 2010700 1124200 950790 974190 840840 1281800 784710 1332200 98087 1513000 1627300 1991800 1166400 1016900 1008500 825740 1226900 1 1 1 1 1 1 1 1 1 1 1 3354300 5969900 9650.9 5619500 3675200 2575600 3078600 4415500 4051900 3397100 4651200 3123100 5569300 268180 5712000 3508000 2853000 3184100 4366000 4100800 3359800 4468300 3 3 1 3 3 3 3 3 3 3 3 713990000 366050000 347940000 7059 618 6577 38195;38196;38197;38198;38199 45865;45866;45867;45868 45865 4 GLQKEEVVLLTHGDSVDK Unmodified 1966.0371 0.037120373 1128 P49915;P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 0 1 By MS/MS By MS/MS 5.2 0.748 1 2 2 2 3 53.291 53.42 4 1.5877E-17 15215 20211116_3445_TMUAki_TMT10x_S_F6 154.12 141.76 22859000 36821000 235150 38922000 30320000 32488000 22243000 26370000 27490000 25369000 30277000 21286000 34366000 2185800 39462000 28882000 33356000 23146000 27090000 27835000 24818000 29121000 6 6 4 6 6 6 6 6 6 6 6 8769000 14563000 45119 14610000 18575000 21428000 11539000 10230000 10223000 9564100 11526000 8165100 13589000 903210 15003000 17636000 21157000 12032000 10946000 10504000 9368300 11078000 2 2 1 2 2 2 2 2 2 2 2 14090000 22258000 190030 24312000 11745000 11060000 10703000 16140000 17267000 15804000 18751000 13121000 20777000 1282600 24459000 11245000 12199000 11115000 16144000 17332000 15449000 18043000 4 4 3 4 4 4 4 4 4 4 4 4486400000 1944400000 2542000000 7060 1128 6578 38200;38201;38202;38203;38204 45869;45870;45871;45872;45873;45874 45874 6 GLQLGQTSTATIQPSQQAQIVTR Unmodified 2425.2925 0.29250021 388 O94842;O94842-3;O94842-2 TOX4 TOX high mobility group box family member 4 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 54.815 54.667 3 7.2265E-37 18011 20211116_3439_TMUAki_TMT10x_S_F1 193.87 174.83 2795100 4974900 12135 4731800 3376100 3981400 2689900 4995000 5297800 4157500 4439200 2602500 4641200 244490 4833100 3220200 4125100 2845100 5002300 5245000 4094900 4308900 4 4 2 4 4 4 4 4 4 4 4 817680 1218100 1595.5 1133500 1352900 1982600 1103200 1315700 1478000 1104900 1207000 761360 1136300 76774 1175000 1291000 1952400 1143600 1365100 1477600 1087800 1172700 1 1 1 1 1 1 1 1 1 1 1 1977400 3756800 10539 3598300 2023200 1998800 1586800 3679300 3819800 3052500 3232200 1841200 3504900 167710 3658100 1929200 2172700 1701500 3637300 3767400 3007100 3136100 3 3 1 3 3 3 3 3 3 3 3 735360000 520470000 214890000 7061 388 6579 38205;38206 45875;45876;45877;45878 45876 4 GLQSGVDIGVK Unmodified 1071.5924 0.59242362 2572 Q99439 CNN2 Calponin-2 yes yes 0 0 0 0 By matching By MS/MS 5.25 0.433 3 1 1 3 49.24 49.41 2 4.4679E-11 13384 20211116_3444_TMUAki_TMT10x_S_F5 126.19 76.154 2067900 3870500 12272 3888500 2100500 1832700 1795400 2231100 2518400 2160000 2804600 1925500 3611600 183340 3934900 2007100 2002800 1859500 2246200 2540600 2112500 2696600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2067900 3870500 12272 3888500 2100500 1832700 1795400 2231100 2518400 2160000 2804600 1925500 3611600 183340 3934900 2007100 2002800 1859500 2246200 2540600 2112500 2696600 1 1 1 1 1 1 1 1 1 1 1 689140000 231440000 457700000 7062 2572 6580 38207;38208;38209;38210 45879;45880 45879 2 GLQSYYAVAHAVTER Unmodified 1663.8318 0.83181904 1154 P51532-5;P51532-2;P51532-3;P51532-4;P51532 SMARCA4 Transcription activator BRG1 yes no 0 0 0 0 By MS/MS By MS/MS 6.2 2.64 1 2 2 2 3 53.716 54.033 3 2.9461E-10 17433 20211116_3446_TMUAki_TMT10x_S_F7 137.27 114.55 24760000 39842000 255700 50278000 37723000 36647000 27356000 25954000 25546000 25500000 33655000 23055000 37216000 2360900 50351000 35918000 37934000 28235000 26914000 26355000 24924000 32215000 5 5 3 5 5 5 5 5 5 5 5 13139000 20208000 66421 26639000 26839000 26094000 16833000 11540000 10511000 11773000 16833000 12234000 18880000 1271800 26714000 25483000 26289000 17402000 12474000 11194000 11488000 16042000 2 2 1 2 2 2 2 2 2 2 2 11620000 19634000 189280 23639000 10884000 10554000 10523000 14414000 15035000 13727000 16823000 10821000 18335000 1089200 23637000 10436000 11645000 10833000 14440000 15161000 13435000 16173000 3 3 2 3 3 3 3 3 3 3 3 5191300000 2796500000 2394800000 7063 1154 6581 38211;38212;38213;38214;38215 45881;45882;45883;45884;45885;45886 45885 6 GLQSYYAVAHAVTERVDK Unmodified 2006.0221 0.022139011 1154 P51532-5;P51532-2;P51532-3;P51532-4;P51532 SMARCA4 Transcription activator BRG1 yes no 0 0 0 1 By MS/MS 8 0 1 1 59.174 59.351 4 5.8061E-05 17920 20211116_3436_TMUAki_TMT10x_P_F8 80.59 67.823 5268000 8818200 72399 7586400 7712300 11832000 7283600 6575000 5082100 5818400 6710400 4905500 8223700 538460 7889900 7388500 11674000 7342400 6927700 5324300 5713700 6422900 1 1 1 1 1 1 1 1 1 1 1 5268000 8818200 72399 7586400 7712300 11832000 7283600 6575000 5082100 5818400 6710400 4905500 8223700 538460 7889900 7388500 11674000 7342400 6927700 5324300 5713700 6422900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 633330000 633330000 0 7064 1154 6582 38216 45887 45887 1 GLQTVHINENFAK Unmodified 1469.7627 0.76267685 1649 Q13573 SNW1 SNW domain-containing protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 47.264 47.512 3 3.617E-15 14860 20211116_3446_TMUAki_TMT10x_S_F7 174.39 150.01 17213000 25641000 0 33353000 26529000 24190000 17157000 20894000 22293000 18931000 23513000 16025000 23954000 1293400 33344000 25185000 25134000 18052000 21351000 22497000 18570000 22644000 5 5 0 5 5 5 5 5 5 5 5 8380600 11810000 0 15608000 18706000 17029000 9805100 9364200 10020000 8414600 10370000 7801700 11034000 656290 15676000 17700000 17088000 10418000 9879300 10197000 8257200 9992500 2 2 0 2 2 2 2 2 2 2 2 8832500 13831000 0 17745000 7823400 7160500 7351900 11529000 12273000 10517000 13143000 8223300 12920000 637140 17668000 7484300 8045700 7634300 11471000 12301000 10313000 12652000 3 3 0 3 3 3 3 3 3 3 3 1247200000 503070000 744160000 7065 1649 6583 38217;38218;38219 45888;45889;45890;45891;45892 45891 5 GLQVDLQSDGAAAEDIVASEQSLGQK Unmodified 2628.2879 0.28786834 911 P33991 MCM4 DNA replication licensing factor MCM4 yes yes 0 0 0 0 By MS/MS By MS/MS 1.2 0.4 4 1 3 2 91.009 90.997 3 1.4926E-17 32859 20211116_3428_TMUAki_TMT10x_P_F1 129.78 109.16 8647600 14340000 466620 14943000 10673000 8314600 11684000 4486800 3943600 5471500 10064000 8055300 13383000 1174000 15103000 10287000 8793200 11559000 4784600 4567800 5303100 9518500 8 8 2 8 8 8 8 8 8 8 8 138010 229400 951.74 215660 136010 228230 153760 124650 125370 129660 169520 128500 214000 8587.6 221160 130860 229410 154160 132110 130350 126430 162170 4 4 1 4 4 4 4 4 4 4 4 8509600 14111000 465660 14727000 10537000 8086400 11530000 4362200 3818200 5341800 9894000 7926800 13169000 1165400 14882000 10156000 8563800 11405000 4652500 4437400 5176700 9356300 4 4 1 4 4 4 4 4 4 4 4 1079400000 2323500 1077100000 7066 911 6584 38220;38221;38222;38223;38224 45893;45894;45895;45896;45897;45898;45899;45900;45901;45902 45893 10 GLQVLMGR Unmodified 872.49021 0.49020716 2060 Q7L576;Q96F07;Q96F07-2 CYFIP1;CYFIP2 Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2 yes no 0 0 0 0 By MS/MS 1 0 1 1 48.004 47.762 2 0.024871 15199 20211116_3439_TMUAki_TMT10x_S_F1 67.344 4.5019 5629400 9329900 41481 9770600 4975000 5526800 4931400 8095700 9345100 7205300 8630700 5241900 8707500 496210 9873100 4771600 5949900 5141000 8074800 9288500 7073700 8347800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5629400 9329900 41481 9770600 4975000 5526800 4931400 8095700 9345100 7205300 8630700 5241900 8707500 496210 9873100 4771600 5949900 5141000 8074800 9288500 7073700 8347800 2 2 2 2 2 2 2 2 2 2 2 700870000 0 700870000 7067 2060 6585 38225 45903;45904 45904 2 GLRDQEAEQEAQTIHEENIAR Unmodified 2436.1629 0.1629426 2708 Q9BWH6;Q9BWH6-2 RPAP1 RNA polymerase II-associated protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 1.2 0.4 4 1 3 2 36.642 36.572 3;4 2.6494E-102 10585 20211116_3439_TMUAki_TMT10x_S_F1 328.29 297.61 916740 1541200 74.835 1930500 1951900 1758800 1037200 1242300 1688100 1067600 1438700 853420 1439500 70806 1939400 1847300 1790700 1120000 1283900 1680000 1049800 1395600 5 5 1 5 5 5 5 5 5 5 5 582580 928160 74.835 1169400 1715700 1542100 836730 752960 1118100 665560 879330 542310 866980 47919 1181500 1621900 1530300 903400 802770 1116700 653630 855650 3 3 1 3 3 3 3 3 3 3 3 334160 613020 0 761170 236240 216650 200450 489310 570010 402010 559360 311110 572560 22887 757910 225390 260420 216640 481130 563340 396220 539920 2 2 0 2 2 2 2 2 2 2 2 656350000 457620000 198730000 7068 2708 6586 38226;38227;38228;38229;38230 45905;45906;45907;45908;45909 45909 5 GLSASYLEPDRYDEEEEGEESISLAAIK Unmodified 3099.4408 0.44079975 2306 Q8WVC0;Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 yes no 0 0 0 1 By MS/MS 3 0 1 1 74.724 74.476 4 0.0058931 26971 20211116_3441_TMUAki_TMT10x_S_F3 44.05 33.212 1455800 2723800 0 2277800 2067700 1799700 2094100 1767400 1584100 1625900 2095200 1355400 2539900 121120 2348100 1982700 1862200 2107000 1794400 1652000 1593800 2005400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1455800 2723800 0 2277800 2067700 1799700 2094100 1767400 1584100 1625900 2095200 1355400 2539900 121120 2348100 1982700 1862200 2107000 1794400 1652000 1593800 2005400 1 1 0 1 1 1 1 1 1 1 1 125630000 0 125630000 7069 2306 6587 38231 45910 45910 1 GLSEDTTEETLK Unmodified 1321.6249 0.62490554 729 P19338 NCL Nucleolin yes yes 0 0 0 0 By MS/MS By MS/MS 2.09 0.793 3 4 4 6 5 44.423 44.279 2;3 4.2494E-73 11920 20211116_3440_TMUAki_TMT10x_S_F2 335.87 226.45 21678000 32468000 70278 46388000 54884000 27840000 24183000 19040000 20985000 20113000 31172000 20181000 30348000 1925500 46062000 51832000 29308000 26036000 19835000 21850000 19599000 29755000 11 11 4 11 11 11 11 11 11 11 11 12733000 18358000 4449.5 26016000 47894000 22718000 14481000 11386000 11875000 12835000 17832000 11854000 17159000 1322200 25950000 45068000 23093000 16355000 12192000 12406000 12475000 17018000 6 6 2 6 6 6 6 6 6 6 6 8944100 14110000 65828 20372000 6990400 5121800 9702000 7653900 9109900 7277800 13340000 8326900 13189000 603290 20112000 6763700 6215400 9681100 7642900 9443800 7123400 12738000 5 5 2 5 5 5 5 5 5 5 5 1292600000 854690000 437890000 7070 729 6588 38232;38233;38234;38235;38236;38237;38238;38239;38240;38241;38242 45911;45912;45913;45914;45915;45916;45917;45918;45919;45920;45921;45922 45919 12 GLSEDTTEETLKESFDGSVR Unmodified 2199.0179 0.017901073 729 P19338 NCL Nucleolin yes yes 0 0 0 1 By MS/MS By MS/MS 2.52 1.26 5 7 4 3 2 12 9 62.05 61.902 2;3;4 1.78E-129 19163 20211116_3440_TMUAki_TMT10x_S_F2 348.58 312.84 264800000 521920000 557280 328580000 473280000 663630000 406270000 643170000 597580000 559860000 483610000 246530000 486280000 20968000 353870000 451870000 654940000 421520000 652470000 595520000 550220000 470050000 21 21 8 21 21 21 21 21 21 21 21 135630000 257430000 98599 164200000 272870000 469570000 269320000 312090000 299980000 278300000 237440000 126260000 239860000 10408000 178660000 261370000 455990000 274310000 324250000 301620000 273190000 230990000 10 10 2 10 10 10 10 10 10 10 10 129180000 264490000 458680 164390000 200420000 194070000 136950000 331080000 297590000 281560000 246170000 120270000 246420000 10560000 175220000 190500000 198950000 147210000 328220000 293900000 277030000 239060000 11 11 6 11 11 11 11 11 11 11 11 105720000000 61262000000 44463000000 7071 729 6589 38243;38244;38245;38246;38247;38248;38249;38250;38251;38252;38253;38254;38255;38256;38257;38258;38259;38260;38261;38262;38263 45923;45924;45925;45926;45927;45928;45929;45930;45931;45932;45933;45934;45935;45936;45937;45938;45939;45940;45941;45942;45943;45944;45945;45946 45940 24 GLSEDVSISK Unmodified 1033.5292 0.52915466 1757 Q15029;Q15029-2;Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 46.523 46.514 2 1.9462E-09 15693 20211116_3441_TMUAki_TMT10x_S_F3 182.39 106.65 18065000 27862000 38578 31766000 22882000 24633000 19421000 18398000 20219000 17133000 22654000 16819000 26013000 1387400 32024000 21842000 25394000 19905000 18983000 20621000 16785000 21778000 6 6 1 6 6 6 6 6 6 6 6 8851700 13364000 38578 14867000 14447000 17119000 10907000 8716000 9861000 8140200 10968000 8241300 12476000 739250 15095000 13759000 17112000 11217000 9268700 10117000 7973800 10546000 3 3 1 3 3 3 3 3 3 3 3 9213500 14498000 0 16899000 8434500 7513400 8513300 9682100 10358000 8993000 11686000 8577800 13537000 648110 16930000 8082600 8281800 8688400 9714100 10504000 8811500 11232000 3 3 0 3 3 3 3 3 3 3 3 902740000 516520000 386210000 7072 1757 6590 38264;38265;38266;38267 45947;45948;45949;45950;45951;45952 45950 6 GLSFLFPLLK Unmodified 1133.6849 0.68486744 1426 P78344;P78344-2 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 81.762 81.784 2 4.7117E-06 28985 20211116_3446_TMUAki_TMT10x_S_F7 141.48 121.69 7759400 12980000 0 13431000 8623100 11958000 8942600 6038500 5828500 6106800 8701700 7223600 12113000 515120 13648000 8267100 12140000 8957700 6440300 6167700 5961400 8305300 2 2 0 2 2 2 2 2 2 2 2 4578900 8000700 0 8030400 6550300 9270000 5266500 3928100 3484600 3740600 5678500 4262800 7465600 331230 8208800 6243600 9247200 5354000 4257800 3700800 3661000 5409900 1 1 0 1 1 1 1 1 1 1 1 3180500 4979200 0 5400300 2072700 2688400 3676100 2110400 2343900 2366200 3023200 2960800 4647700 183900 5438900 2023600 2893000 3603700 2182500 2466900 2300400 2895300 1 1 0 1 1 1 1 1 1 1 1 695190000 332670000 362520000 7073 1426 6591 38268;38269 45953;45954 45954 2 GLSLGFLEK Unmodified 962.54368 0.54368251 2950 Q9NU22 MDN1 Midasin yes yes 0 0 0 0 By MS/MS 8 0 1 1 70.896 70.959 2 0.0062984 22683 20211116_3436_TMUAki_TMT10x_P_F8 70.816 16.205 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7074 2950 6592 38270 45955 45955 1 GLSNLFLSCPIPK Unmodified 1444.7748 0.77482144 3313 Q9Y570;Q9Y570-4;Q9Y570-2;Q9Y570-3 PPME1 Protein phosphatase methylesterase 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 2 4 3 3 76.926 76.888 2;3 1.3647E-14 25824 20211116_3442_TMUAki_TMT10x_S_F4 172.17 134.98 26389000 44323000 299950 40515000 25931000 36411000 31392000 23043000 18540000 24762000 29617000 24572000 41344000 2305900 41540000 25009000 37046000 31159000 24155000 19817000 24113000 28228000 4 4 3 4 4 4 4 4 4 4 4 12726000 20934000 75812 19623000 12474000 21555000 15098000 10795000 9121700 11881000 13965000 11850000 19529000 1122200 20140000 12031000 21598000 14992000 11551000 9713200 11559000 13321000 2 2 2 2 2 2 2 2 2 2 2 13664000 23389000 224130 20893000 13457000 14856000 16294000 12248000 9418100 12881000 15652000 12723000 21815000 1183700 21400000 12978000 15448000 16166000 12604000 10103000 12554000 14906000 2 2 1 2 2 2 2 2 2 2 2 5936800000 3479500000 2457300000 7075 3313 6593 38271;38272;38273;38274;38275;38276 45956;45957;45958;45959;45960 45960 5 GLSNPNELQAAIDSNRR Unmodified 1853.9344 0.93438664 2611 Q99856 ARID3A AT-rich interactive domain-containing protein 3A yes yes 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 45.273 45.393 3 7.3778E-06 11914 20211116_3445_TMUAki_TMT10x_S_F6 98.077 69.496 4709600 8163400 48215 7591500 6806200 8583700 6465800 9198800 8922400 6498600 7207800 4385500 7615200 464760 7799800 6520500 8697100 6652400 9240900 8908600 6458100 7006200 4 4 4 4 4 4 4 4 4 4 4 2952600 4977500 20126 4349400 5237200 6920000 4990300 5463500 5188700 3872500 4319000 2749300 4642200 295550 4519900 5016600 6858300 5081000 5580800 5239100 3847600 4193300 2 2 2 2 2 2 2 2 2 2 2 1757000 3185900 28089 3242100 1569100 1663800 1475400 3735300 3733700 2626100 2888800 1636100 2973000 169210 3279900 1503900 1838800 1571400 3660100 3669600 2610500 2812800 2 2 2 2 2 2 2 2 2 2 2 513990000 274980000 239010000 7076 2611 6594 38277;38278 45961;45962;45963;45964 45964 4 GLSPAQADSQFLENAKR Unmodified 1830.9224 0.92242497 220 O43491;O43491-4;O43491-2;O43491-3 EPB41L2 Band 4.1-like protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 50.579 50.701 3 1.0865E-22 14093 20211116_3445_TMUAki_TMT10x_S_F6 179.09 144.7 7456700 12996000 107840 12834000 9842500 10800000 7198200 13513000 12634000 11543000 11436000 6943600 12126000 741450 13074000 9376800 11188000 7608000 13543000 12573000 11355000 11069000 3 3 2 3 3 3 3 3 3 3 3 2772200 4522400 83445 4347500 5162700 6822400 3852000 4527900 4090500 3800000 3953000 2581800 4219200 341080 4484500 4922400 6746000 3983200 4697700 4146000 3741300 3817500 1 1 1 1 1 1 1 1 1 1 1 4684500 8473600 24400 8486600 4679800 3977200 3346100 8984700 8543700 7743200 7483000 4361900 7906800 400370 8589300 4454500 4442400 3624800 8845200 8426700 7613600 7251400 2 2 1 2 2 2 2 2 2 2 2 581950000 370960000 211000000 7077 220 6595 38279;38280 45965;45966;45967 45966 3 GLSQSALPYR Unmodified 1090.5771 0.57710791 1347 P62277 RPS13 40S ribosomal protein S13 yes yes 0 0 0 0 By MS/MS 7 0 1 1 39.743 40.376 2 2.594E-08 11864 20211116_3446_TMUAki_TMT10x_S_F7 166.66 134.51 549280 977720 2300.7 1160700 446830 420850 396340 991000 1138600 756390 1108100 511440 913000 44323 1160100 427190 487180 427640 971790 1124700 748390 1069900 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 549280 977720 2300.7 1160700 446830 420850 396340 991000 1138600 756390 1108100 511440 913000 44323 1160100 427190 487180 427640 971790 1124700 748390 1069900 3 3 2 3 3 3 3 3 3 3 3 25651000 0 25651000 7078 1347 6596 38281 45968;45969;45970 45970 3 GLSQSALPYRR Unmodified 1246.6782 0.67821894 1347 P62277 RPS13 40S ribosomal protein S13 yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 33.864 33.633 3 3.5912E-06 10466 20211116_3441_TMUAki_TMT10x_S_F3 119.74 84.475 1152800 1788700 26781 1982200 2295300 2244900 1351200 1627100 1819100 1151000 1676100 1073500 1669800 136530 2012500 2178700 2256900 1434400 1671300 1825000 1143800 1621300 2 2 2 2 2 2 2 2 2 2 2 770840 1183200 25634 1321200 1957400 1952200 1023300 1101000 1243400 771460 1102600 717920 1104500 104420 1347600 1854900 1930800 1093600 1152500 1250300 767020 1068000 1 1 1 1 1 1 1 1 1 1 1 381930 605530 1147 660980 337850 292670 327930 526120 575640 379560 573550 355630 565230 32116 664890 323770 326110 340820 518750 574700 376730 553350 1 1 1 1 1 1 1 1 1 1 1 78722000 55182000 23540000 7079 1347 6597 38282;38283 45971;45972 45972 2 GLSSLLCNFTK Unmodified 1238.6329 0.63290823 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 76.565 76.511 2 8.2101E-15 25204 20211116_3431_TMUAki_TMT10x_P_F4 195.51 150.35 12260000 19549000 0 19607000 14276000 22918000 13874000 9670500 7673500 10426000 13368000 11414000 18242000 981510 20048000 13674000 22846000 13902000 10524000 8279900 10151000 12719000 2 2 0 2 2 2 2 2 2 2 2 12260000 19549000 0 19607000 14276000 22918000 13874000 9670500 7673500 10426000 13368000 11414000 18242000 981510 20048000 13674000 22846000 13902000 10524000 8279900 10151000 12719000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1343000000 1003200000 339820000 7080 1433 6598 38284;38285;38286;38287 45973;45974;45975 45973 3 GLSSLLYGSIPK Unmodified 1233.6969 0.69688869 1196 P53007 SLC25A1 Tricarboxylate transport protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3.25 0.433 3 1 2 2 75.113 74.995 2;3 2.1955E-09 27350 20211116_3441_TMUAki_TMT10x_S_F3 157.66 125.44 25395000 43078000 488850 40246000 29953000 40538000 30616000 27660000 26552000 29079000 33395000 23648000 40186000 2610100 41262000 28765000 40990000 30895000 28815000 27432000 28342000 32003000 7 7 6 7 7 7 7 7 7 7 7 15389000 25243000 94004 23646000 15706000 28277000 17859000 16383000 16120000 17807000 18860000 14329000 23548000 1353200 24305000 15118000 28253000 17948000 17300000 16573000 17332000 18109000 3 3 2 3 3 3 3 3 3 3 3 10006000 17835000 394850 16600000 14247000 12262000 12758000 11276000 10431000 11272000 14535000 9319500 16637000 1257000 16957000 13647000 12737000 12946000 11515000 10859000 11009000 13894000 4 4 4 4 4 4 4 4 4 4 4 1834400000 728450000 1106000000 7081 1196 6599 38288;38289;38290;38291 45976;45977;45978;45979;45980;45981;45982 45982 7 GLSTFPGAEHCLR Unmodified 1443.6929 0.69288272 2528 Q96P11;Q96P11-2;Q96P11-4;Q96P11-5;Q63ZY6;Q3KNT7;Q63ZY6-4;Q3KNT7-2;Q3KNT7-3;Q63ZY6-5;Q63ZY6-6 NSUN5;NSUN5P2;NSUN5P1 Probable 28S rRNA (cytosine-C(5))-methyltransferase;Putative methyltransferase NSUN5C;Putative NOL1/NOP2/Sun domain family member 5B yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 39.343 39.549 3 1.8737E-06 9322 20211116_3434_TMUAki_TMT10x_P_F6 112.5 98.319 3112600 5144500 25480 5357600 5385400 5979200 3782300 4290900 4207100 3757800 4467200 2898300 4801200 303990 5459900 5124400 6014900 3933500 4431900 4270700 3692000 4301300 6 6 5 6 6 6 6 6 6 6 6 2312300 3846400 15931 3883300 4692400 5343900 3115400 3470300 3374500 2981900 3420300 2153000 3589200 230240 3980800 4460000 5311800 3250500 3608300 3423200 2932400 3298100 3 3 2 3 3 3 3 3 3 3 3 800370 1298100 9548.8 1474300 692960 635320 666890 820590 832650 775900 1046900 745290 1212000 73751 1479100 664370 703140 682950 823630 847420 759620 1003200 3 3 3 3 3 3 3 3 3 3 3 216670000 165640000 51030000 7082 2528 6600 38292;38293;38294 45983;45984;45985;45986;45987;45988 45983 6 GLTAVSNNAGVDNFGLGLLLR Unmodified 2100.1328 0.13275209 1248 P55809 OXCT1 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial yes yes 0 0 0 0 By MS/MS 2 0 1 1 79.784 79.766 3 0.10009 26372 20211116_3440_TMUAki_TMT10x_S_F2 28.959 20.359 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7083 1248 6601 38295 45989 45989 1 GLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSR Unmodified 3518.6174 0.61743295 468 P00441 SOD1 Superoxide dismutase [Cu-Zn] yes yes 0 0 0 0 By MS/MS By MS/MS 7.43 0.495 4 3 3 4 52.561 52.894 5;6 5.7605E-36 16364 20211116_3435_TMUAki_TMT10x_P_F7 166.2 156.26 45300000 71753000 600980 79473000 54633000 66190000 43095000 57003000 56450000 57973000 59281000 42182000 66982000 4338400 80332000 52124000 68043000 44730000 58449000 56944000 56580000 57098000 14 14 9 14 14 14 14 14 14 14 14 20100000 30454000 313210 34979000 26224000 42702000 22735000 24206000 23143000 24510000 24998000 18717000 28434000 2013500 35480000 25074000 42610000 23256000 25554000 23592000 23925000 24057000 5 5 4 5 5 5 5 5 5 5 5 25200000 41299000 287770 44494000 28409000 23488000 20360000 32797000 33306000 33463000 34283000 23465000 38548000 2324900 44851000 27050000 25432000 21474000 32896000 33352000 32655000 33041000 9 9 5 9 9 9 9 9 9 9 9 11776000000 5722200000 6054200000 7084 468 6602 38296;38297;38298;38299;38300;38301;38302 45990;45991;45992;45993;45994;45995;45996;45997;45998;45999;46000;46001;46002;46003 45991 14 GLTLAPGLSPARPLFGSDFEK Unmodified 2172.1579 0.15790421 2132 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 yes yes 0 0 0 1 By MS/MS By matching 2 0 2 1 1 74.635 74.528 3 6.0895E-05 25542 20211116_3429_TMUAki_TMT10x_P_F2 72.916 55.634 7679500 13425000 140360 11086000 6841000 14968000 8535300 8684200 9469000 9763100 10230000 7151400 12519000 755750 11532000 6610600 14867000 8598000 9178900 9619300 9490700 9845100 1 1 1 1 1 1 1 1 1 1 1 7679500 13425000 140360 11086000 6841000 14968000 8535300 8684200 9469000 9763100 10230000 7151400 12519000 755750 11532000 6610600 14867000 8598000 9178900 9619300 9490700 9845100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 883130000 538420000 344710000 7085 2132 6603 38303;38304 46004 46004 1 GLTMLDHEQVTPEDPGAQFLIR Oxidation (M) 2482.2162 0.21622373 3076 Q9UBE0;Q9UBE0-3;Q9UBE0-2 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed yes no 0 0 1 0 By MS/MS By MS/MS 4.44 1.07 2 3 2 2 4 5 64.277 64.191 3;4 1.4621E-26 19316 20211116_3444_TMUAki_TMT10x_S_F5 161.08 151.67 25060000 42591000 257820 38067000 30522000 40265000 30862000 35915000 34359000 34537000 34708000 23333000 39725000 1900700 39187000 29272000 40786000 31395000 36694000 34814000 33787000 33470000 15 15 9 15 15 15 15 15 15 15 15 9871900 16022000 135240 14222000 11179000 21509000 12613000 13205000 12788000 13422000 12366000 9192100 14943000 786930 14745000 10758000 21276000 12725000 13851000 12987000 13100000 11942000 6 6 3 6 6 6 6 6 6 6 6 15188000 26569000 122570 23845000 19343000 18755000 18249000 22710000 21572000 21115000 22342000 14141000 24781000 1113800 24442000 18514000 19509000 18671000 22843000 21827000 20687000 21529000 9 9 6 9 9 9 9 9 9 9 9 9393300000 3999700000 5393600000 7086 3076 6604 38305;38306;38307;38308;38309;38310;38311;38312;38313 46005;46006;46007;46008;46009;46010;46011;46012;46013;46014;46015;46016;46017;46018;46019 46017 3125 15 GLTMLDHEQVTPEDPGAQFLIR Unmodified 2466.2213 0.2213091 3076 Q9UBE0;Q9UBE0-3;Q9UBE0-2 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed yes no 0 0 0 0 By MS/MS 4 0 2 2 70.743 70.574 3 7.9543E-07 23317 20211116_3442_TMUAki_TMT10x_S_F4 86.748 73.518 2813400 4814700 0 4365000 2968700 3009800 3054700 2733600 2729000 2848200 3313900 2619000 4491000 168620 4464500 2844300 3143600 3083900 2796700 2811300 2777000 3178700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2813400 4814700 0 4365000 2968700 3009800 3054700 2733600 2729000 2848200 3313900 2619000 4491000 168620 4464500 2844300 3143600 3083900 2796700 2811300 2777000 3178700 1 1 0 1 1 1 1 1 1 1 1 943450000 0 943450000 7087 3076 6604 38314;38315 46020;46021 46021 2 GLTPLAR Unmodified 726.43882 0.43882351 2706 Q9BWD1;Q9BWD1-2 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes no 0 0 0 0 By MS/MS By MS/MS 5.62 2.13 2 1 6 2 2 4 9 33.227 33.42 2 0.0022242 7335 20211116_3434_TMUAki_TMT10x_P_F6 128.38 70.919 4195300 6426400 35325 6568200 4971100 4842900 4504400 4757700 4882600 4634100 5392200 3906400 5997100 365680 6664800 4755600 5038100 4605200 4837900 4968800 4531000 5185800 14 14 8 14 14 14 14 14 14 14 14 1295300 1876700 11970 1949200 2029900 2315100 1445800 1443100 1456400 1414800 1638400 1206100 1751400 121430 1988800 1931900 2316300 1497400 1510400 1487700 1382900 1574900 4 4 3 4 4 4 4 4 4 4 4 2900000 4549800 23355 4619000 2941300 2527800 3058600 3314600 3426200 3219300 3753800 2700200 4245700 244250 4676000 2823700 2721800 3107700 3327500 3481100 3148100 3611000 10 10 5 10 10 10 10 10 10 10 10 620880000 397140000 223740000 7088 2706 6605 38316;38317;38318;38319;38320;38321;38322;38323;38324;38325;38326;38327;38328 46022;46023;46024;46025;46026;46027;46028;46029;46030;46031;46032;46033;46034;46035;46036;46037 46023 16 GLTPSQIGVILR Unmodified 1252.7503 0.75032125 1347 P62277 RPS13 40S ribosomal protein S13 yes yes 0 0 0 0 By MS/MS By MS/MS 2.75 2.11 2 3 2 1 3 5 64.554 64.331 2;3 6.1362E-15 20105 20211116_3440_TMUAki_TMT10x_S_F2 183.72 137.27 103340000 163740000 619320 190880000 94539000 100560000 99743000 73306000 80565000 84469000 108670000 96216000 152890000 8093600 191460000 90756000 107400000 100310000 76242000 83797000 82037000 103960000 13 13 3 13 13 13 13 13 13 13 13 39704000 61917000 422480 71290000 37171000 54283000 39900000 27706000 29922000 30854000 41560000 36968000 57811000 3195800 71811000 35706000 55752000 40020000 29605000 31290000 30004000 39731000 4 4 1 4 4 4 4 4 4 4 4 63635000 101820000 196840 119590000 57368000 46277000 59843000 45600000 50643000 53614000 67106000 59249000 95076000 4897800 119650000 55050000 51651000 60287000 46637000 52507000 52032000 64225000 9 9 2 9 9 9 9 9 9 9 9 15311000000 8002000000 7308900000 7089 1347 6606 38329;38330;38331;38332;38333;38334;38335;38336 46038;46039;46040;46041;46042;46043;46044;46045;46046;46047;46048;46049;46050 46045 13 GLTQDSNLPSLTQATK Unmodified 1672.8632 0.86317875 4 A0A1B0GUW6 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 3 1 2 38.609 38.534 3;4 0.044846 11410 20211116_3439_TMUAki_TMT10x_S_F1 37.092 4.9108 6449400 10046000 26644 10427000 10200000 8234900 6623200 5785200 6410500 5251500 7514800 6005000 9375100 583740 10578000 9690100 8469300 6898600 5989700 6570100 5150900 7215000 4 4 3 4 4 4 4 4 4 4 4 3206900 5188200 17552 5369300 7349400 5595900 3658100 3036900 3688000 2995800 4431900 2985800 4841800 311930 5468200 6953400 5629200 3904500 3215600 3777000 2927600 4252200 2 2 1 2 2 2 2 2 2 2 2 3242500 4857500 9091.9 5058000 2850600 2639000 2965100 2748300 2722500 2255700 3082900 3019200 4533300 271810 5109600 2736700 2840100 2994100 2774000 2793100 2223300 2962800 2 2 2 2 2 2 2 2 2 2 2 1279400000 683840000 595520000 7090 4 6607 38337;38338;38339 46051;46052 46052 2 GLTSAGRK Unmodified 788.45045 0.45045083 1308 P61313 RPL15 60S ribosomal protein L15 yes yes 0 0 0 1 By MS/MS 2 0 1 1 27.286 27.049 3 0.0021422 6366 20211116_3429_TMUAki_TMT10x_P_F2 100.02 8.117 313770 539320 0 382510 314320 544810 374550 235460 297460 256470 356790 292120 502660 22275 403730 302660 538060 374390 255640 308090 249610 342350 1 1 0 1 1 1 1 1 1 1 1 313770 539320 0 382510 314320 544810 374550 235460 297460 256470 356790 292120 502660 22275 403730 302660 538060 374390 255640 308090 249610 342350 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11196000 11196000 0 7091 1308 6608 38340 46053 46053 1 GLTSVINQK Unmodified 958.54475 0.54474515 531 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 0 By MS/MS By MS/MS 6.17 2.41 2 2 4 4 6 6 46.466 46.65 2;3 2.7725E-11 14028 20211116_3435_TMUAki_TMT10x_P_F7 234.91 180.94 62554000 94099000 183800 103900000 115050000 92591000 65850000 63598000 66391000 58347000 81278000 58241000 87841000 5652000 105130000 109060000 94371000 69384000 65968000 68046000 57201000 77945000 13 13 5 13 13 13 13 13 13 13 13 40068000 58678000 78488 64944000 92717000 74399000 42935000 39854000 42067000 36458000 50956000 37305000 54776000 3777200 65953000 87631000 74433000 46127000 42162000 43150000 35746000 48881000 7 7 2 7 7 7 7 7 7 7 7 22486000 35421000 105310 38952000 22337000 18192000 22915000 23744000 24324000 21889000 30322000 20937000 33065000 1874900 39178000 21433000 19938000 23257000 23806000 24897000 21455000 29065000 6 6 3 6 6 6 6 6 6 6 6 6335500000 4267700000 2067800000 7092 531 6609 38341;38342;38343;38344;38345;38346;38347;38348;38349;38350;38351;38352 46054;46055;46056;46057;46058;46059;46060;46061;46062;46063;46064;46065;46066 46057 13 GLVAVITGGASGLGLATAER Unmodified 1812.0105 0.010511692 2598 Q99714;Q99714-2 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 0 0 0 0 By MS/MS By MS/MS 2.59 0.844 2 5 8 2 9 8 76.219 76.171 2;3 2.277E-171 28529 20211116_3441_TMUAki_TMT10x_S_F3 419.46 378.73 39289000 63728000 35327 58892000 44797000 55273000 48080000 33903000 30720000 36772000 48571000 36577000 59447000 2240500 60367000 43003000 56051000 48061000 35634000 32646000 35795000 46302000 15 15 4 15 15 15 15 15 15 15 15 20043000 33380000 31773 30348000 19378000 34664000 23630000 18047000 16232000 19250000 26433000 18660000 31136000 1144200 31238000 18674000 34673000 23517000 19223000 17199000 18751000 25184000 9 9 3 9 9 9 9 9 9 9 9 19246000 30348000 3553.1 28544000 25420000 20609000 24450000 15856000 14489000 17521000 22137000 17917000 28311000 1096300 29128000 24329000 21378000 24543000 16411000 15447000 17044000 21118000 6 6 1 6 6 6 6 6 6 6 6 22428000000 9758600000 12670000000 7093 2598 6610 38353;38354;38355;38356;38357;38358;38359;38360;38361;38362;38363;38364;38365;38366;38367;38368;38369 46067;46068;46069;46070;46071;46072;46073;46074;46075;46076;46077;46078;46079;46080;46081;46082;46083;46084 46082 18 GLVDGGEAVEAR Unmodified 1171.5833 0.5833155 3066 Q9P2M7 CGN Cingulin yes yes 0 0 0 0 By MS/MS 2 0 1 1 36.125 36.224 2 1.5621E-07 8641 20211116_3440_TMUAki_TMT10x_S_F2 112.83 78.967 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7094 3066 6611 38370 46085 46085 1 GLVEEYVEK Unmodified 1064.539 0.53899107 27 C9JLW8 FAM195B Protein FAM195B yes yes 0 0 0 0 By MS/MS 3 0 1 1 55.196 54.809 2 0.0071727 19101 20211116_3441_TMUAki_TMT10x_S_F3 68.371 22.242 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7095 27 6612 38371 46086 46086 1 GLVEGASVK Unmodified 858.48108 0.48108226 1080 P48681 NES Nestin yes yes 0 0 0 0 By MS/MS 4 0 1 1 38.693 38.874 2 0.10773 10327 20211116_3442_TMUAki_TMT10x_S_F4 55.503 28.016 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7096 1080 6613 38372 46087 46087 1 GLVEPVDVVDNADGTQTVNYVPSR Unmodified 2543.2504 0.25036063 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 3.1 1.14 1 2 3 3 1 3 7 67.493 67.3 2;3 3.3913E-153 24183 20211116_3441_TMUAki_TMT10x_S_F3 356.87 343.99 21104000 34397000 174600 31768000 23028000 29404000 25726000 21192000 21302000 22936000 25733000 19651000 32086000 1854400 32559000 22153000 29916000 25817000 22013000 22022000 22329000 24686000 12 12 6 12 12 12 12 12 12 12 12 11064000 17409000 9160.4 15904000 10872000 19328000 13563000 10916000 11382000 11700000 12786000 10302000 16238000 879670 16382000 10490000 19289000 13549000 11547000 11725000 11395000 12291000 6 6 2 6 6 6 6 6 6 6 6 10040000 16988000 165440 15864000 12156000 10076000 12163000 10275000 9919700 11236000 12946000 9349200 15847000 974730 16177000 11664000 10626000 12268000 10466000 10297000 10934000 12395000 6 6 4 6 6 6 6 6 6 6 6 15942000000 7554600000 8387800000 7097 755 6614 38373;38374;38375;38376;38377;38378;38379;38380;38381;38382 46088;46089;46090;46091;46092;46093;46094;46095;46096;46097;46098;46099;46100;46101 46098 14 GLVGEIIK Unmodified 827.51165 0.5116541 770;684 P15531;P15531-2;P22392-2;P22392 NME1;NME2 Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase B no no 0 0 0 0 By MS/MS By MS/MS 5.5 1.12 2 2 2 2 4 4 57.048 57.315 2 0.00045684 17352 20211116_3431_TMUAki_TMT10x_P_F4 154.31 58.687 117470000 181850000 1143900 220340000 152660000 168160000 91581000 127660000 135300000 120970000 157060000 109380000 169830000 10873000 221280000 144880000 173620000 97442000 131640000 136500000 118420000 150830000 9 9 7 9 9 9 9 9 9 9 9 48756000 71957000 221900 87299000 108270000 115070000 41403000 52126000 55112000 47131000 63244000 45398000 67201000 5079100 88391000 102140000 114100000 45917000 56025000 55756000 46237000 60757000 4 4 3 4 4 4 4 4 4 4 4 68711000 109900000 922010 133040000 44394000 53090000 50178000 75537000 80186000 73834000 93814000 63980000 102630000 5793800 132890000 42741000 59521000 51524000 75617000 80746000 72181000 90077000 5 5 4 5 5 5 5 5 5 5 5 13313000000 7355300000 5957700000 7098 684;770 6615 38383;38384;38385;38386;38387;38388;38389;38390 46102;46103;46104;46105;46106;46107;46108;46109;46110;46111 46102 10 GLVGEIIKR Unmodified 983.61277 0.61276513 770;684 P15531;P15531-2;P22392-2;P22392 NME1;NME2 Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase B no no 0 0 0 1 By MS/MS By MS/MS 4.92 3.04 3 2 1 2 4 6 6 46.495 46.56 2;3 3.4373E-06 12546 20211116_3428_TMUAki_TMT10x_P_F1 160.59 109.24 35581000 56558000 77563 56368000 72252000 87241000 29317000 50571000 48126000 47047000 51849000 33129000 52774000 3387200 57979000 68195000 86147000 32564000 53162000 48268000 46094000 49902000 8 8 3 8 8 8 8 8 8 8 8 20499000 32118000 31673 30953000 61924000 73198000 17247000 28461000 30273000 27534000 30086000 19087000 29965000 2235400 32291000 58249000 70958000 20234000 31167000 30221000 26929000 29029000 4 4 1 4 4 4 4 4 4 4 4 15082000 24440000 45890 25415000 10329000 14042000 12070000 22110000 17852000 19513000 21763000 14042000 22808000 1151800 25688000 9945500 15188000 12331000 21995000 18047000 19165000 20873000 4 4 2 4 4 4 4 4 4 4 4 7652800000 5406200000 2246600000 7099 684;770 6616 38391;38392;38393;38394;38395;38396;38397;38398;38399;38400;38401;38402 46112;46113;46114;46115;46116;46117;46118;46119;46120;46121;46122 46112 11 GLVGEIIKRFEQK Unmodified 1515.8773 0.87731267 770;684 P15531;P15531-2;P22392-2;P22392 NME1;NME2 Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase B no no 0 0 0 2 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 72.847 72.63 4 1.6991E-22 23370 20211116_3440_TMUAki_TMT10x_S_F2 203.74 178.21 17767000 27522000 89142 23263000 31873000 19753000 21002000 19241000 12004000 15838000 18667000 16543000 25665000 1698900 23980000 30289000 20328000 21593000 19487000 12842000 15608000 17801000 5 5 3 5 5 5 5 5 5 5 5 4985900 7067500 0 6393400 4916000 8647500 6333500 5295400 3348600 4323700 4922800 4642000 6592200 362850 6603600 4746100 8595100 6257800 5524100 3593100 4262800 4700100 1 1 0 1 1 1 1 1 1 1 1 12781000 20454000 89142 16870000 26957000 11105000 14669000 13945000 8655100 11514000 13744000 11901000 19072000 1336100 17377000 25543000 11733000 15336000 13963000 9248800 11346000 13101000 4 4 3 4 4 4 4 4 4 4 4 2289700000 721640000 1568100000 7100 684;770 6617 38403;38404;38405 46123;46124;46125;46126;46127 46124 5 GLVGNPLPSVR Unmodified 1107.64 0.64004252 2811 Q9H583 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 0 0 0 0 By MS/MS 1 0 1 1 50.318 50.057 2 5.3245E-07 16100 20211116_3439_TMUAki_TMT10x_S_F1 107.79 66.867 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7101 2811 6618 38406 46128 46128 1 GLVLDHGAR Unmodified 936.51411 0.51411372 982 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.745 1 2 3 4 2 29.864 29.825 2;3 6.1546E-06 7082 20211116_3433_TMUAki_TMT10x_P_F5 180.93 116.12 8040300 12336000 141260 12252000 10543000 11553000 9661100 7279000 7247300 7158400 9868300 7487300 11511000 825450 12494000 10095000 11716000 9771100 7612900 7571500 6996200 9438500 6 6 5 6 6 6 6 6 6 6 6 5097100 8044300 85724 7393500 7311600 8564700 6045700 4741600 4749700 4555500 6383700 4746500 7503800 525640 7606100 6983600 8566900 6158500 5008300 4946700 4456800 6107600 4 4 3 4 4 4 4 4 4 4 4 2943200 4292100 55537 4858200 3231700 2988000 3615300 2537400 2497600 2602800 3484600 2740800 4007100 299810 4888200 3111800 3149300 3612500 2604600 2624900 2539400 3330900 2 2 2 2 2 2 2 2 2 2 2 1324900000 983340000 341570000 7102 982 6619 38407;38408;38409;38410;38411;38412 46129;46130;46131;46132;46133;46134 46132 6 GLVLDHGARHPDMK Oxidation (M) 1560.7831 0.78309471 982 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 1 1 By MS/MS 4.67 0.471 1 2 3 30.04 30.008 4;5 0.015802 6702 20211116_3433_TMUAki_TMT10x_P_F5 54.44 44.486 489450 787100 9296.3 739870 1120000 1032300 635840 603580 627650 567810 734010 455790 734280 58073 762500 1062300 1024000 670020 634240 642660 556030 704780 2 2 2 2 2 2 2 2 2 2 2 489450 787100 9296.3 739870 1120000 1032300 635840 603580 627650 567810 734010 455790 734280 58073 762500 1062300 1024000 670020 634240 642660 556030 704780 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 54350000 54350000 0 7103 982 6620 38413;38414;38415 46135;46136 46135 1263 2 GLVPAGIR Unmodified 781.48102 0.48102268 3095 Q9UBX3;Q9UBX3-2 SLC25A10 Mitochondrial dicarboxylate carrier yes no 0 0 0 0 By MS/MS 7 0 1 1 39.862 40.494 2 0.0053531 11944 20211116_3446_TMUAki_TMT10x_S_F7 88.627 19.237 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7104 3095 6621 38416 46137 46137 1 GLVPEDDTK Unmodified 972.47639 0.47639081 1810 Q15459;Q15459-2 SF3A1 Splicing factor 3A subunit 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 39.261 39.303 2 0.00065922 11544 20211116_3430_TMUAki_TMT10x_P_F3 115.7 80.343 193650 293220 0 270400 317050 298310 201180 111770 150970 132950 186080 180280 273520 13667 277880 300820 297990 208570 123690 157030 128970 178420 1 1 0 1 1 1 1 1 1 1 1 193650 293220 0 270400 317050 298310 201180 111770 150970 132950 186080 180280 273520 13667 277880 300820 297990 208570 123690 157030 128970 178420 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10788000 10788000 0 7105 1810 6622 38417 46138 46138 1 GLVQALGLSNFNSR Unmodified 1474.7892 0.78922595 669 P14550 AKR1A1 Alcohol dehydrogenase [NADP(+)] yes yes 0 0 0 0 By MS/MS By MS/MS 4.17 0.898 2 1 3 2 4 70.268 69.912 2;3 1.4071E-30 22939 20211116_3442_TMUAki_TMT10x_S_F4 217.91 169.11 3432600 5790700 73559 6016300 3939400 6385000 4079500 3303800 3377400 3572600 4336400 3196600 5404200 360240 6127200 3785200 6412700 4109000 3522600 3500700 3478100 4153500 1 1 1 1 1 1 1 1 1 1 1 3432600 5790700 73559 6016300 3939400 6385000 4079500 3303800 3377400 3572600 4336400 3196600 5404200 360240 6127200 3785200 6412700 4109000 3522600 3500700 3478100 4153500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 466100000 239550000 226550000 7106 669 6623 38418;38419;38420;38421;38422;38423 46139;46140;46141;46142;46143 46141 5 GLVQALQTK Unmodified 956.56548 0.56548059 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 4.75 3.27 1 1 2 2 2 51.518 51.491 2 1.0292E-05 14600 20211116_3428_TMUAki_TMT10x_P_F1 159.37 77.82 9749900 15121000 54915 18225000 21297000 17905000 10566000 12176000 12962000 10723000 13761000 9078000 14121000 946900 18368000 20149000 18132000 11353000 12625000 13110000 10532000 13250000 3 3 2 3 3 3 3 3 3 3 3 6704100 10160000 36810 12698000 18427000 15353000 8300700 8305400 8757000 7292800 9633100 6241800 9490200 679970 12814000 17411000 15318000 8963400 8769700 8919900 7164200 9265600 2 2 1 2 2 2 2 2 2 2 2 3045900 4960500 18105 5527000 2870100 2552800 2265200 3870100 4204800 3430100 4127400 2836100 4630800 266930 5554000 2737900 2813700 2389300 3855200 4190000 3368100 3983900 1 1 1 1 1 1 1 1 1 1 1 695960000 612580000 83376000 7107 1092 6624 38424;38425;38426;38427 46144;46145;46146;46147 46144 4 GLVSTLQSATEQMAATVAGSVR Oxidation (M) 2192.1107 0.11069602 1995 Q6P2E9;Q6P2E9-2 EDC4 Enhancer of mRNA-decapping protein 4 yes no 0 0 1 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 71.843 71.789 3 1.5437E-10 22772 20211116_3436_TMUAki_TMT10x_P_F8 108.96 92.82 13333000 24482000 84763 21241000 15765000 20398000 18155000 14025000 13875000 16084000 16496000 12414000 22832000 1083400 21886000 15173000 20689000 18158000 14643000 14396000 15624000 15832000 4 4 2 4 4 4 4 4 4 4 4 3418700 6579600 84763 5554400 3678600 8133200 4665700 4158900 4267700 4717900 4816100 3183800 6135600 366070 5777400 3557200 8037200 4668700 4445800 4378600 4584700 4628900 2 2 2 2 2 2 2 2 2 2 2 9914300 17902000 0 15687000 12086000 12265000 13489000 9866500 9607600 11366000 11680000 9230100 16696000 717290 16108000 11616000 12652000 13489000 10197000 10018000 11039000 11203000 2 2 0 2 2 2 2 2 2 2 2 2050000000 1430900000 619110000 7108 1995 6625 38428;38429;38430;38431 46148;46149;46150;46151 46149 2544 4 GLVSTLQSATEQMAATVAGSVR Unmodified 2176.1158 0.1157814 1995 Q6P2E9;Q6P2E9-2 EDC4 Enhancer of mRNA-decapping protein 4 yes no 0 0 0 0 By MS/MS 4 0 1 1 80.954 80.962 3 8.6491E-77 27039 20211116_3431_TMUAki_TMT10x_P_F4 272.71 241.09 3401900 5737300 10493 5595900 3543200 5610900 4257400 2323900 2218400 2804400 4328700 3167300 5353000 263840 5719000 3414000 5641200 4218000 2543000 2420900 2719100 4110400 2 2 1 2 2 2 2 2 2 2 2 3401900 5737300 10493 5595900 3543200 5610900 4257400 2323900 2218400 2804400 4328700 3167300 5353000 263840 5719000 3414000 5641200 4218000 2543000 2420900 2719100 4110400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1129000000 1129000000 0 7109 1995 6625 38432 46152;46153 46152 2 GLVVDMDGFEEER Oxidation (M) 1510.661 0.66097347 1104 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 1 0 By MS/MS 1.5 0.5 1 1 2 52.184 52.017 2 1.0121E-07 16873 20211116_3439_TMUAki_TMT10x_S_F1 107.58 88.848 772680 1571400 9115.6 1395900 900730 1173300 686130 3067900 2485000 1922300 1722700 719510 1465600 74349 1433100 858810 1251600 762880 2989400 2422300 1924600 1685400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 772680 1571400 9115.6 1395900 900730 1173300 686130 3067900 2485000 1922300 1722700 719510 1465600 74349 1433100 858810 1251600 762880 2989400 2422300 1924600 1685400 1 1 1 1 1 1 1 1 1 1 1 81351000 0 81351000 7110 1104 6626 38433;38434 46154;46155 46154 1464 2 GLVVDMDGFEEERK Oxidation (M) 1638.7559 0.75593649 1104 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 1 1 By MS/MS By MS/MS 2.71 1.03 1 2 2 2 3 4 46.89 46.803 3 8.3175E-05 14782 20211116_3439_TMUAki_TMT10x_S_F1 90.793 78.238 31522000 53709000 275990 59490000 56839000 63020000 39263000 59016000 74477000 56909000 57194000 29351000 50138000 2837000 60334000 54064000 63892000 41835000 60142000 73614000 55667000 55708000 13 13 8 13 13 13 13 13 13 13 13 15204000 23808000 99676 28402000 41195000 46929000 24489000 24766000 31540000 25694000 25000000 14157000 22233000 1625700 28927000 39080000 46168000 25932000 26327000 31546000 25056000 24319000 6 6 3 6 6 6 6 6 6 6 6 16318000 29901000 176310 31088000 15644000 16090000 14774000 34250000 42938000 31215000 32194000 15194000 27905000 1211400 31407000 14985000 17725000 15903000 33816000 42068000 30611000 31389000 7 7 5 7 7 7 7 7 7 7 7 2331800000 1393600000 938200000 7111 1104 6627 38435;38436;38437;38438;38439;38440;38441 46156;46157;46158;46159;46160;46161;46162;46163;46164;46165;46166;46167;46168 46162 1464 13 GLVVDMDGFEEERK Unmodified 1622.761 0.76102187 1104 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 1 By MS/MS By MS/MS 3.57 0.904 1 2 3 1 3 4 58.061 57.897 3 6.7327E-19 20379 20211116_3441_TMUAki_TMT10x_S_F3 165.78 138.14 41895000 68341000 962780 80088000 50241000 41309000 44635000 35100000 31127000 38152000 54858000 39016000 63814000 4487600 80294000 48091000 44335000 45150000 36092000 33099000 37135000 52185000 7 7 7 7 7 7 7 7 7 7 7 6215100 9588500 179730 12132000 11366000 13095000 9420400 5235200 5055600 5670000 8329600 5788200 8956600 754920 12212000 10860000 13104000 9522100 5732500 5450400 5519700 7933900 1 1 1 1 1 1 1 1 1 1 1 35680000 58753000 783050 67956000 38875000 28214000 35215000 29865000 26071000 32482000 46528000 33228000 54857000 3732700 68082000 37230000 31231000 35628000 30360000 27649000 31616000 44251000 6 6 6 6 6 6 6 6 6 6 6 2721000000 953450000 1767500000 7112 1104 6627 38442;38443;38444;38445;38446;38447;38448 46169;46170;46171;46172;46173;46174;46175;46176;46177 46175 9 GLVVPSGGGR Unmodified 897.50321 0.50321468 3162 Q9UKX7;Q9UKX7-2 NUP50 Nuclear pore complex protein Nup50 yes no 0 0 0 0 By MS/MS By MS/MS 7.4 0.8 1 1 3 3 2 33.276 33.498 2 1.043E-08 6879 20211116_3447_TMUAki_TMT10x_S_F8 136.39 107.31 734780 1182700 4913.2 1151000 1180300 1278900 830540 607480 675640 613540 875180 684180 1103400 70549 1178300 1123200 1279800 855940 651710 701200 598970 838070 5 5 4 5 5 5 5 5 5 5 5 734780 1182700 4913.2 1151000 1180300 1278900 830540 607480 675640 613540 875180 684180 1103400 70549 1178300 1123200 1279800 855940 651710 701200 598970 838070 5 5 4 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39226000 39226000 0 7113 3162 6628 38449;38450;38451;38452;38453 46178;46179;46180;46181;46182;46183;46184 46184 7 GLVVPVIR Unmodified 851.55927 0.559273 960 P36957;P36957-2 DLST Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 54.332 54.108 2 0.0013601 15661 20211116_3428_TMUAki_TMT10x_P_F1 123.34 58.471 19579000 29775000 0 33304000 24318000 25902000 20285000 22663000 21320000 22215000 24471000 18226000 27797000 1152600 33615000 23181000 26771000 20819000 23192000 21756000 21714000 23509000 4 4 0 4 4 4 4 4 4 4 4 9372100 14419000 0 15536000 13332000 17290000 10676000 10997000 10718000 10517000 11433000 8724700 13458000 624090 15797000 12703000 17364000 10969000 11484000 10927000 10292000 11007000 2 2 0 2 2 2 2 2 2 2 2 10207000 15357000 0 17767000 10986000 8612400 9609000 11666000 10602000 11697000 13039000 9501300 14339000 528540 17819000 10478000 9407000 9849600 11708000 10829000 11423000 12502000 2 2 0 2 2 2 2 2 2 2 2 2046000000 1183600000 862400000 7114 960 6629 38454;38455;38456;38457;38458 46185;46186;46187;46188 46185 4 GLVYETSVLDPDEGIR Unmodified 1761.8785 0.87849447 330 O75390 CS Citrate synthase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 2.18 1.19 4 4 3 6 5 66.998 66.863 2;3 2.0658E-46 21322 20211116_3440_TMUAki_TMT10x_S_F2 238.87 211.19 94234000 155420000 649830 176300000 92597000 116960000 98385000 70994000 79794000 83627000 105850000 87741000 145100000 7773500 177490000 88930000 121780000 98918000 74880000 82915000 81154000 101300000 15 15 9 15 15 15 15 15 15 15 15 42930000 65912000 223800 75999000 45414000 69239000 46807000 31308000 34915000 36784000 47171000 39969000 61541000 3276100 76718000 43559000 70101000 47037000 33910000 36475000 35700000 45125000 7 7 3 7 7 7 7 7 7 7 7 51304000 89505000 426030 100300000 47183000 47724000 51578000 39686000 44879000 46843000 58677000 47771000 83558000 4497300 100780000 45371000 51680000 51880000 40970000 46439000 45455000 56176000 8 8 6 8 8 8 8 8 8 8 8 21767000000 13039000000 8727500000 7115 330 6630 38459;38460;38461;38462;38463;38464;38465;38466;38467;38468;38469 46189;46190;46191;46192;46193;46194;46195;46196;46197;46198;46199;46200;46201;46202;46203 46202 15 GLVYETSVLDPDEGIRFR Unmodified 2065.048 0.04801941 330 O75390 CS Citrate synthase, mitochondrial yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 67.484 67.41 3 1.825E-06 20687 20211116_3444_TMUAki_TMT10x_S_F5 99.238 79.914 17082000 28570000 46763 27447000 25500000 18267000 18625000 18674000 17200000 17791000 21608000 15904000 26654000 1467800 27942000 24274000 19184000 19208000 18939000 17717000 17412000 20708000 6 6 3 6 6 6 6 6 6 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17082000 28570000 46763 27447000 25500000 18267000 18625000 18674000 17200000 17791000 21608000 15904000 26654000 1467800 27942000 24274000 19184000 19208000 18939000 17717000 17412000 20708000 6 6 3 6 6 6 6 6 6 6 6 1380600000 0 1380600000 7116 330 6631 38470;38471 46204;46205;46206;46207;46208;46209 46208 6 GLWGPVHELGR Unmodified 1219.6462 0.64619053 3296 Q9Y4C2;Q9Y4C2-2 TCAF1 TRPM8 channel-associated factor 1 yes no 0 0 0 0 By MS/MS 7 0 1 1 48.115 48.598 3 0.10767 15268 20211116_3446_TMUAki_TMT10x_S_F7 34.779 14.45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7117 3296 6632 38472 46210 46210 1 GLYAAAAGVLAGVESR Acetyl (Protein N-term) 1545.8151 0.81510635 2528 Q96P11;Q96P11-2;Q96P11-4;Q96P11-5 NSUN5 Probable 28S rRNA (cytosine-C(5))-methyltransferase yes no 1 0 0 0 By MS/MS By MS/MS 4.67 1.11 1 2 1 2 2 4 82.373 82.371 2 7.7386E-29 26689 20211116_3434_TMUAki_TMT10x_P_F6 112.73 83.64 2826700 4425500 31340 4591100 3330600 4106900 3174900 2767200 2715800 2993900 3443400 2632100 4130100 253240 4664700 3190400 4183600 3214300 2887900 2808700 2914700 3299200 5 5 2 5 5 5 5 5 5 5 5 1440400 2217500 6485.3 2178800 1388700 2523800 1563800 1386500 1386200 1506400 1661400 1341200 2069000 113080 2230600 1335600 2524200 1571500 1470700 1427700 1466200 1594200 3 3 1 3 3 3 3 3 3 3 3 1386300 2208000 24855 2412300 1941800 1583100 1611100 1380700 1329600 1487600 1782000 1290900 2061100 140160 2434100 1854700 1659300 1642800 1417200 1381000 1448400 1705000 2 2 1 2 2 2 2 2 2 2 2 336930000 132080000 204860000 7118 2528 6633 38473;38474;38475;38476;38477;38478 46211;46212;46213;46214;46215 46212 5 GLYCYELDEK Unmodified 1288.5646 0.56455389 56 CON__Q3ZBS7 yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 55.52 55.59 2 1.8283E-09 17113 20211116_3442_TMUAki_TMT10x_S_F4 183.47 149.68 + 22160000 47162000 12538 44549000 48723000 46267000 26423000 43230000 64246000 47061000 44180000 20631000 43997000 1950500 45658000 46141000 46959000 29139000 44221000 62993000 45804000 43240000 4 4 2 4 4 4 4 4 4 4 4 9939800 21653000 3060.4 18951000 37712000 33624000 18924000 19253000 29929000 21578000 18845000 9254300 20194000 1124800 19744000 35682000 33026000 20518000 20370000 29573000 20979000 18522000 2 2 1 2 2 2 2 2 2 2 2 12220000 25509000 9477.4 25598000 11011000 12642000 7499300 23977000 34317000 25483000 25335000 11377000 23803000 825710 25914000 10459000 13933000 8620700 23851000 33419000 24826000 24718000 2 2 1 2 2 2 2 2 2 2 2 2238500000 1187700000 1050800000 7119 56 6634 38479;38480;38481 46216;46217;46218;46219;46220 46219 5 GLYDGPVCEVSVTPK Unmodified 1619.7865 0.78650834 1852 Q16555;Q16555-2 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 4.71 1.03 2 4 4 4 7 7 57.963 58.021 2;3 2.6336E-43 18127 20211116_3442_TMUAki_TMT10x_S_F4 259.55 218.26 88406000 151860000 872730 161070000 114560000 140540000 95291000 114030000 101980000 105350000 114260000 82319000 141730000 8165700 163360000 109390000 143840000 97872000 117020000 103890000 103250000 109840000 14 14 8 14 14 14 14 14 14 14 14 45775000 74800000 467770 80841000 70554000 102180000 61193000 59250000 53035000 54125000 58445000 42623000 69819000 4419500 82364000 67433000 101810000 62307000 62254000 54503000 53072000 56213000 8 8 5 8 8 8 8 8 8 8 8 42632000 77058000 404970 80225000 44006000 38359000 34098000 54783000 48941000 51225000 55817000 39696000 71915000 3746200 80993000 41959000 42029000 35565000 54764000 49384000 50175000 53632000 6 6 3 6 6 6 6 6 6 6 6 20140000000 11155000000 8985300000 7120 1852 6635 38482;38483;38484;38485;38486;38487;38488;38489;38490;38491;38492;38493;38494;38495 46221;46222;46223;46224;46225;46226;46227;46228;46229;46230;46231;46232;46233;46234;46235 46231 15 GLYDGPVHEVMVPAKPGSGAPAR Oxidation (M) 2320.1634 0.16340029 113 O14531 DPYSL4 Dihydropyrimidinase-related protein 4 yes yes 0 0 1 1 By MS/MS By MS/MS 7 0 2 1 1 43.884 44.41 4 1.9688E-07 13295 20211116_3435_TMUAki_TMT10x_P_F7 92.01 83.62 4120200 7290200 5549.6 7718300 7026400 9067300 4993800 7793400 8127400 6968400 6610600 3836000 6804200 346140 7863800 6683800 9125300 5268700 7963400 8077300 6839700 6424000 4 4 1 4 4 4 4 4 4 4 4 2774200 4839000 5549.6 5057200 5679200 7724500 3899600 5236300 5456400 4813900 4449600 2582900 4516100 252260 5183700 5399500 7648800 4096800 5436800 5447100 4718900 4323600 2 2 1 2 2 2 2 2 2 2 2 1346000 2451300 0 2661000 1347200 1342800 1094100 2557100 2671100 2154500 2161000 1253100 2288100 93884 2680200 1284200 1476600 1171900 2526500 2630300 2120800 2100400 2 2 0 2 2 2 2 2 2 2 2 601080000 536240000 64845000 7121 113 6636 38496;38497 46236;46237;46238;46239 46237 90 4 GLYGKVEGLDPDNVR Unmodified 1630.8315 0.83148469 2378 Q92917 GPKOW G patch domain and KOW motifs-containing protein yes yes 0 0 0 1 By MS/MS By matching 5.67 0.471 1 2 2 1 53.244 53.383 3 0.10995 16004 20211116_3433_TMUAki_TMT10x_P_F5 30.606 9.9428 3740700 6323600 30046 6953700 6766200 9160400 6023500 5585000 5026400 5392400 5489900 3483200 5903000 380510 7082400 6470900 9115600 6117900 5853200 5173600 5274400 5281600 1 1 1 1 1 1 1 1 1 1 1 3740700 6323600 30046 6953700 6766200 9160400 6023500 5585000 5026400 5392400 5489900 3483200 5903000 380510 7082400 6470900 9115600 6117900 5853200 5173600 5274400 5281600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 771320000 550380000 220940000 7122 2378 6637 38498;38499;38500 46240 46240 1 GLYNEHTVDR Unmodified 1202.568 0.56799978 2001 Q6P6C2;Q6P6C2-1;Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 yes no 0 0 0 0 By matching By MS/MS 2.5 0.5 1 1 1 1 29.646 29.399 3 0.057534 8831 20211116_3441_TMUAki_TMT10x_S_F3 39.58 23.377 176460 299580 0 208930 231950 218960 231350 151750 199400 141940 220570 164250 279200 8912.4 219700 221970 220940 233710 157390 205010 139030 212120 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 176460 299580 0 208930 231950 218960 231350 151750 199400 141940 220570 164250 279200 8912.4 219700 221970 220940 233710 157390 205010 139030 212120 1 1 0 1 1 1 1 1 1 1 1 5512600 1971100 3541500 7123 2001 6638 38501;38502 46241 46241 1 GMAAAGNYAWVNR Oxidation (M) 1395.6354 0.63536784 3285 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog yes yes 0 0 1 0 By MS/MS By MS/MS 7.43 0.495 4 3 4 3 39.207 39.657 2;3 4.4399E-23 11416 20211116_3435_TMUAki_TMT10x_P_F7 184.04 168.15 2841700 4492300 12277 5231400 5032300 4566600 3287100 3301900 3465200 3056600 4222700 2645900 4194600 258940 5274700 4780800 4664800 3431000 3413600 3544300 2995400 4050100 7 7 5 7 7 7 7 7 7 7 7 1557100 2468000 5513.2 2711700 3903100 3664200 2193000 1865900 2009900 1842600 2390800 1449700 2303800 152670 2763400 3698900 3633700 2308200 1987200 2066200 1800500 2294600 2 2 1 2 2 2 2 2 2 2 2 1284600 2024400 6764 2519700 1129100 902420 1094200 1436000 1455300 1214100 1831900 1196100 1890800 106270 2511300 1081900 1031100 1122900 1426400 1478100 1194800 1755500 5 5 4 5 5 5 5 5 5 5 5 230430000 169970000 60467000 7124 3285 6639 38503;38504;38505;38506;38507;38508;38509 46242;46243;46244;46245;46246;46247;46248;46249;46250 46243 3252 9 GMDEMEK 2 Oxidation (M) 870.30992 0.30991911 3413 yes no 0 0 2 0 By MS/MS 3 0 1 1 30.229 29.966 2 0.060529 8979 20211116_3441_TMUAki_TMT10x_S_F3 50.025 21.77 + 33132 74581 1340.9 59305 29535 176200 50679 1028900 956490 649360 298360 30859 69535 3946.2 63328 28933 191450 78341 991740 910080 649840 308190 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33132 74581 1340.9 59305 29535 176200 50679 1028900 956490 649360 298360 30859 69535 3946.2 63328 28933 191450 78341 991740 910080 649840 308190 1 1 1 1 1 1 1 1 1 1 1 35924000 0 35924000 7125 3413 6640 38510 46251 46251 3331;3332 1 GMGLVNHVFTEDNLKK Oxidation (M) 1816.9142 0.91416847 1524 Q06203 PPAT Amidophosphoribosyltransferase yes yes 0 0 1 1 By MS/MS 7 0 1 1 46.859 47.424 4 0.00023427 14319 20211116_3435_TMUAki_TMT10x_P_F7 77.746 66.802 3124800 4536300 51519 4981000 7390400 7937000 4274000 4620600 4912600 3758500 4170800 2909900 4234500 366820 5094200 7011000 7828800 4518000 4839400 4943400 3706300 4046400 1 1 1 1 1 1 1 1 1 1 1 3124800 4536300 51519 4981000 7390400 7937000 4274000 4620600 4912600 3758500 4170800 2909900 4234500 366820 5094200 7011000 7828800 4518000 4839400 4943400 3706300 4046400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 829910000 829910000 0 7126 1524 6641 38511 46252 46252 2062 1 GMGLVNHVFTEDNLKK Unmodified 1800.9193 0.91925384 1524 Q06203 PPAT Amidophosphoribosyltransferase yes yes 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 53.638 53.885 4 0.10428 15686 20211116_3436_TMUAki_TMT10x_P_F8 25.965 9.659 27123000 42641000 264410 44183000 31348000 31120000 30366000 31081000 26435000 29298000 34012000 25255000 39794000 2426000 44769000 30041000 32507000 30731000 31549000 27334000 28688000 32576000 4 4 3 4 4 4 4 4 4 4 4 8165900 13053000 83124 12656000 11555000 14843000 11135000 9224800 8494100 8439400 10951000 7603800 12178000 801940 12972000 11074000 14860000 11235000 9639100 8844000 8274700 10488000 1 1 1 1 1 1 1 1 1 1 1 18957000 29588000 181290 31527000 19794000 16277000 19231000 21856000 17941000 20859000 23061000 17651000 27616000 1624100 31798000 18967000 17648000 19496000 21910000 18490000 20413000 22088000 3 3 2 3 3 3 3 3 3 3 3 3432800000 2417800000 1014900000 7127 1524 6641 38512;38513;38514 46253 46253 1 GMGPGTPAGYGR Oxidation (M) 1135.508 0.50804206 777 P23246 SFPQ Splicing factor, proline- and glutamine-rich yes yes 0 0 1 0 By MS/MS 4.5 0.5 1 1 2 29.543 29.529 2 4.8248E-07 6506 20211116_3433_TMUAki_TMT10x_P_F5 132.39 118.25 584490 1039400 0 933220 1314000 970630 622400 382590 516210 423150 665390 544180 969480 53938 960100 1242200 973290 664200 419880 535100 411600 637260 2 2 0 2 2 2 2 2 2 2 2 584490 1039400 0 933220 1314000 970630 622400 382590 516210 423150 665390 544180 969480 53938 960100 1242200 973290 664200 419880 535100 411600 637260 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 60217000 60217000 0 7128 777 6642 38515;38516 46254;46255 46255 908 2 GMNFSVVVFDTAPTGHTLR Oxidation (M) 2064.0099 0.0098597649 233 O43681 ASNA1 ATPase ASNA1 yes yes 0 0 1 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 57.77 58.119 3 1.3421E-17 16854 20211116_3447_TMUAki_TMT10x_S_F8 144.17 133.12 14835000 25011000 151830 24013000 18739000 24546000 16946000 25545000 23186000 21739000 22852000 13813000 23335000 1330700 24575000 17926000 24996000 17476000 25808000 23303000 21389000 22055000 8 8 4 8 8 8 8 8 8 8 8 5962800 9640200 120890 10181000 7711500 14447000 7797400 9266900 8257200 7984500 9238600 5552900 8997400 631520 10412000 7403700 14338000 7919000 9645000 8414900 7851000 8881700 3 3 3 3 3 3 3 3 3 3 3 8871900 15371000 30936 13832000 11027000 10099000 9149000 16278000 14929000 13755000 13614000 8260100 14337000 699170 14164000 10522000 10658000 9557300 16163000 14888000 13538000 13173000 5 5 1 5 5 5 5 5 5 5 5 4827600000 2679000000 2148600000 7129 233 6643 38517;38518;38519;38520 46256;46257;46258;46259;46260;46261;46262;46263 46263 184 8 GMPPGGGGEVVFSCPVRK Oxidation (M) 1845.8866 0.88657351 3242 Q9Y2P8 RCL1 RNA 3'-terminal phosphate cyclase-like protein yes yes 0 0 1 1 By MS/MS 8 0 1 1 43.252 43.427 3 5.5542E-13 11455 20211116_3436_TMUAki_TMT10x_P_F8 139.29 121.43 303790 486250 2118.5 495140 588200 697310 401030 459970 487960 377980 422790 282870 453760 31144 507520 559420 692570 419260 477190 490300 372530 409870 1 1 1 1 1 1 1 1 1 1 1 303790 486250 2118.5 495140 588200 697310 401030 459970 487960 377980 422790 282870 453760 31144 507520 559420 692570 419260 477190 490300 372530 409870 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 67943000 67943000 0 7130 3242 6644 38521 46264 46264 3224 1 GMQELGVHPDQETYTDYVIPCFDSVNSAR Oxidation (M) 3343.4762 0.47615617 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 68.114 67.956 3;4 8.6541E-07 22193 20211116_3442_TMUAki_TMT10x_S_F4 79.286 73.567 8327300 14004000 75924 13343000 9863400 9829700 9531200 7654000 7013000 7203300 9545100 7753300 13064000 681600 13607000 9447200 10182000 9607400 7878400 7334600 7053700 9129500 8 8 1 8 8 8 8 8 8 8 8 1506400 2610000 0 2590800 1400900 2372200 1592400 1405400 1296200 1364200 1699700 1402400 2435300 98638 2641100 1346400 2408400 1596000 1476500 1346000 1334000 1627200 2 2 0 2 2 2 2 2 2 2 2 6820900 11394000 75924 10753000 8462600 7457600 7938900 6248600 5716800 5839100 7845400 6350900 10629000 582960 10965000 8100800 7773400 8011300 6401900 5988600 5719700 7502300 6 6 1 6 6 6 6 6 6 6 6 3183400000 959910000 2223500000 7131 1018 6645 38522;38523;38524;38525;38526;38527 46265;46266;46267;46268;46269;46270;46271;46272;46273 46270 1311 9 GMQELGVHPDQETYTDYVIPCFDSVNSAR Unmodified 3327.4812 0.48124155 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 By MS/MS 4 0 1 1 73.462 73.328 3 8.7146E-21 24402 20211116_3442_TMUAki_TMT10x_S_F4 133.4 122.02 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7132 1018 6645 38528 46274 46274 1 GMQGPPHPHGIQGGPGSQGIQGPVSQGPLMGLNPR 2 Oxidation (M) 3471.6888 0.68882376 2750 Q9C0J8 WDR33 pre-mRNA 3' end processing protein WDR33 yes yes 0 0 2 0 By MS/MS 1 0 1 1 44.815 44.604 4 9.3567E-17 13842 20211116_3439_TMUAki_TMT10x_S_F1 111.58 99.515 171780 233870 0 393630 117890 139600 102590 368730 514410 349730 311690 159910 218820 8781.8 386490 112340 163030 117610 362760 498110 342350 306950 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 171780 233870 0 393630 117890 139600 102590 368730 514410 349730 311690 159910 218820 8781.8 386490 112340 163030 117610 362760 498110 342350 306950 1 1 0 1 1 1 1 1 1 1 1 110450000 0 110450000 7133 2750 6646 38529 46275 46275 2931;2932 1 GMSLNLEPDNVGVVVFGNDK Oxidation (M) 2119.0256 0.025569409 805 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 5 1.19 2 4 5 4 2 8 9 75.431 75.394 2;3;4 3.5902E-18 23862 20211116_3444_TMUAki_TMT10x_S_F5 156.29 133.37 76641000 130280000 831050 117780000 86926000 125140000 92813000 101100000 100980000 102600000 103530000 71360000 121520000 6316600 121150000 83493000 126490000 94089000 104050000 102460000 100140000 99790000 25 25 10 25 25 25 25 25 25 25 25 40317000 67831000 429260 59327000 37623000 79212000 43638000 52655000 52830000 54680000 52850000 37540000 63261000 3305300 61421000 36234000 78872000 44234000 54937000 53344000 53319000 50982000 12 12 4 12 12 12 12 12 12 12 12 36324000 62452000 401790 58456000 49303000 45929000 49175000 48446000 48151000 47918000 50677000 33820000 58259000 3011200 59730000 47259000 47619000 49856000 49114000 49120000 46821000 48808000 13 13 6 13 13 13 13 13 13 13 13 25397000000 13053000000 12344000000 7134 805 6647 38530;38531;38532;38533;38534;38535;38536;38537;38538;38539;38540;38541;38542;38543;38544;38545;38546 46276;46277;46278;46279;46280;46281;46282;46283;46284;46285;46286;46287;46288;46289;46290;46291;46292;46293;46294;46295;46296;46297;46298;46299;46300;46301;46302 46296 951 27 GMSLNLEPDNVGVVVFGNDK Unmodified 2103.0307 0.030654786 805 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 By matching By MS/MS 4.67 0.471 1 2 1 2 78.32 78.332 3 0.0050208 25159 20211116_3444_TMUAki_TMT10x_S_F5 52.541 30.343 3221300 5610100 0 4869500 4397600 3289100 4176200 2823000 2682700 2980700 3924000 2999200 5232000 271420 4996300 4210300 3437700 4201400 2898500 2838600 2904600 3746900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3221300 5610100 0 4869500 4397600 3289100 4176200 2823000 2682700 2980700 3924000 2999200 5232000 271420 4996300 4210300 3437700 4201400 2898500 2838600 2904600 3746900 1 1 0 1 1 1 1 1 1 1 1 901440000 426480000 474970000 7135 805 6647 38547;38548;38549 46303;46304 46303 2 GMTLVTPLQLLLFASK Oxidation (M) 1746.9954 0.9953789 1546 Q08211;Q08211-2 DHX9 ATP-dependent RNA helicase A yes no 0 0 1 0 By MS/MS By MS/MS 6.12 1.28 3 2 4 6 2 7 10 83.104 83.114 2;3 6.3891E-35 27076 20211116_3445_TMUAki_TMT10x_S_F6 200.76 183.74 49659000 82271000 138500 70470000 62778000 85127000 58585000 68829000 59288000 67137000 62860000 46236000 76723000 4124800 72944000 60078000 85451000 59667000 70752000 60412000 65639000 60528000 20 20 9 20 20 20 20 20 20 20 20 22294000 37377000 63230 31110000 22978000 53791000 23686000 30924000 27264000 29899000 28246000 20757000 34854000 1658500 32519000 22037000 52885000 24100000 32565000 27615000 29243000 27218000 7 7 3 7 7 7 7 7 7 7 7 27365000 44894000 75273 39360000 39800000 31336000 34899000 37904000 32024000 37238000 34614000 25480000 41870000 2466400 40425000 38041000 32566000 35567000 38187000 32797000 36396000 33310000 13 13 6 13 13 13 13 13 13 13 13 14230000000 5287100000 8943100000 7136 1546 6648 38550;38551;38552;38553;38554;38555;38556;38557;38558;38559;38560;38561;38562;38563;38564;38565;38566 46305;46306;46307;46308;46309;46310;46311;46312;46313;46314;46315;46316;46317;46318;46319;46320;46321;46322;46323;46324;46325 46318 2077 21 GMTLVTPLQLLLFASK Unmodified 1731.0005 0.0004642775 1546 Q08211;Q08211-2 DHX9 ATP-dependent RNA helicase A yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 83.651 83.663 3 3.5084E-05 27280 20211116_3447_TMUAki_TMT10x_S_F8 84.508 67.019 1021700 1840200 42968 1530700 1315300 1426000 1233100 1511900 1484800 1384700 1406400 951640 1715900 128110 1581800 1261700 1461100 1262800 1529000 1496800 1357700 1359100 3 3 2 3 3 3 3 3 3 3 3 185690 270340 0 267220 229330 327380 179460 169490 181020 215610 200460 172890 252250 15255 273730 218590 326250 184690 181670 184780 208670 192770 1 1 0 1 1 1 1 1 1 1 1 836030 1569800 42968 1263400 1086000 1098700 1053600 1342400 1303800 1169100 1205900 778750 1463700 112860 1308100 1043100 1134900 1078100 1347400 1312000 1149000 1166300 2 2 2 2 2 2 2 2 2 2 2 73938000 9199600 64738000 7137 1546 6648 38567;38568;38569 46326;46327;46328 46328 3 GMTLVTPLQLLLFASKK Oxidation (M) 1875.0903 0.090341917 1546 Q08211;Q08211-2 DHX9 ATP-dependent RNA helicase A yes no 0 0 1 1 By MS/MS By MS/MS 7.43 0.728 1 2 4 4 3 80.14 80.146 3;4 4.6808E-12 26445 20211116_3436_TMUAki_TMT10x_P_F8 139.88 128.19 56967000 92535000 203120 73921000 58639000 93338000 65969000 69107000 57633000 69148000 61003000 53040000 86275000 3317400 77017000 56393000 93345000 66274000 71488000 59117000 67532000 58743000 6 6 2 6 6 6 6 6 6 6 6 32551000 50752000 203120 39943000 28919000 67668000 34934000 39873000 32587000 39062000 34321000 30308000 47316000 2577600 41926000 27876000 66601000 35048000 41918000 33316000 38184000 33055000 3 3 2 3 3 3 3 3 3 3 3 24416000 41783000 0 33979000 29720000 25671000 31035000 29234000 25047000 30086000 26682000 22732000 38959000 739790 35091000 28518000 26744000 31226000 29569000 25801000 29349000 25689000 3 3 0 3 3 3 3 3 3 3 3 11299000000 5962800000 5335900000 7138 1546 6649 38570;38571;38572;38573;38574;38575;38576 46329;46330;46331;46332;46333;46334 46330 2077 6 GMTRPLSTLIGSSQSCR Oxidation (M) 1865.9088 0.90876551 31 CON__ENSEMBL:ENSBTAP00000032840 yes yes 0 0 1 1 By MS/MS 3 0 2 2 38.558 38.287 3 1.3127E-10 12310 20211116_3441_TMUAki_TMT10x_S_F3 122.87 97.969 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7139 31 6650 38577;38578 46335;46336 46335 15 2 GMTTVDDFFQGTK Unmodified 1445.6497 0.6496805 1692 Q14195-2;Q14195 DPYSL3 Dihydropyrimidinase-related protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 68.731 68.731 3 0.013692 21507 20211116_3445_TMUAki_TMT10x_S_F6 53.947 39.789 20142000 33453000 240470 32512000 23047000 27814000 25855000 16321000 13020000 16823000 24177000 18756000 31212000 1932000 33164000 22184000 28367000 25682000 17189000 14203000 16410000 22977000 5 5 4 5 5 5 5 5 5 5 5 12062000 19804000 175170 18852000 13885000 20644000 16890000 9571100 7609100 10113000 14398000 11233000 18476000 1188800 19326000 13400000 20671000 16688000 10306000 8388000 9854300 13679000 3 3 3 3 3 3 3 3 3 3 3 8079900 13649000 65298 13661000 9162000 7170100 8965200 6750100 5411100 6710800 9778300 7523600 12736000 743120 13838000 8783800 7695300 8994100 6883000 5815300 6555700 9297600 2 2 1 2 2 2 2 2 2 2 2 2875900000 1336600000 1539300000 7140 1692 6651 38579;38580;38581;38582 46337;46338;46339;46340;46341 46341 5 GMYDGPVFDLTTTPK Oxidation (M) 1656.7705 0.77052392 1692 Q14195-2;Q14195 DPYSL3 Dihydropyrimidinase-related protein 3 yes no 0 0 1 0 By MS/MS 6 0 1 1 65.198 65.153 3 0.00081389 20102 20211116_3445_TMUAki_TMT10x_S_F6 68.283 56.844 7307400 13338000 52940 12574000 8576500 8079600 8060700 9161700 8879200 8988000 9631600 6804000 12442000 631320 12814000 8211100 8532500 8228600 9255200 9024000 8785300 9268000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7307400 13338000 52940 12574000 8576500 8079600 8060700 9161700 8879200 8988000 9631600 6804000 12442000 631320 12814000 8211100 8532500 8228600 9255200 9024000 8785300 9268000 2 2 1 2 2 2 2 2 2 2 2 416460000 0 416460000 7141 1692 6652 38583 46342;46343 46343 2266 2 GMYDGPVYEVPATPK Oxidation (M) 1638.76 0.75995923 1691 Q14194-2;Q14194 CRMP1 Dihydropyrimidinase-related protein 1 yes no 0 0 1 0 By MS/MS By matching 4.33 0.471 2 1 2 1 52.512 52.634 3 0.0015983 15427 20211116_3431_TMUAki_TMT10x_P_F4 62.68 48.774 3937800 6167100 101830 7955600 14083000 9824100 5376400 5862400 5949000 4547200 6118600 3667200 5761300 563470 8017700 13291000 9803800 5926500 6121000 6033100 4495200 5897100 1 1 1 1 1 1 1 1 1 1 1 3937800 6167100 101830 7955600 14083000 9824100 5376400 5862400 5949000 4547200 6118600 3667200 5761300 563470 8017700 13291000 9803800 5926500 6121000 6033100 4495200 5897100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1009000000 617770000 391210000 7142 1691 6653 38584;38585;38586 46344;46345 46344 2262 2 GNAGQSNYGFANSAMER Oxidation (M) 1788.7486 0.7485597 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 1 0 By MS/MS By MS/MS 4.5 0.5 3 3 3 3 33.817 33.897 2;3 4.1107E-16 8055 20211116_3431_TMUAki_TMT10x_P_F4 145.08 132.07 3124000 5066600 6539.5 6115500 9407600 6898100 4753200 3291400 3686800 2746700 4655100 2908700 4731600 232840 6176400 8902500 6898000 5031800 3512100 3831700 2705000 4460700 8 8 2 8 8 8 8 8 8 8 8 2789400 4480000 5705.1 5451700 9095600 6634000 4408100 2992900 3356800 2479300 4200000 2597100 4184000 211210 5510600 8602700 6603600 4683900 3211400 3490900 2442600 4025500 4 4 1 4 4 4 4 4 4 4 4 334670 586600 834.39 663840 311950 264050 345150 298440 330000 267420 455110 311600 547650 21630 665790 299860 294430 347890 300770 340820 262450 435160 4 4 1 4 4 4 4 4 4 4 4 697600000 651150000 46452000 7143 1092 6654 38587;38588;38589;38590;38591;38592 46346;46347;46348;46349;46350;46351;46352;46353;46354 46348 1426 9 GNAGQSNYGFANSAMER Unmodified 1772.7536 0.75364508 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 4.75 0.829 2 1 1 1 3 39.409 39.527 3 1.2776E-29 9450 20211116_3444_TMUAki_TMT10x_S_F5 191.15 181.64 1536300 2532300 24246 3048400 2478600 2224200 1541900 2124200 2245000 1666000 2329400 1430600 2364800 163170 3061100 2354500 2314500 1634800 2151100 2256200 1646000 2244400 4 4 4 4 4 4 4 4 4 4 4 618960 1023900 5975.6 1162100 1775800 1622400 904170 866290 859940 710200 850370 576360 955940 73087 1182600 1681100 1607400 961340 914270 876440 700050 820620 1 1 1 1 1 1 1 1 1 1 1 917360 1508400 18271 1886300 702820 601800 637780 1257900 1385100 955820 1479000 854290 1408900 90078 1878400 673360 707050 673460 1236800 1379700 945950 1423800 3 3 3 3 3 3 3 3 3 3 3 235280000 146890000 88387000 7144 1092 6654 38593;38594;38595;38596 46355;46356;46357;46358;46359 46358 5 GNAMVEEGHFAAEDVK Oxidation (M) 1718.757 0.75699912 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 1 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 37.597 37.519 3 4.3851E-06 12148 20211116_3441_TMUAki_TMT10x_S_F3 100.04 83.817 2006300 3215400 63322 4100300 3441400 3391700 2526800 2651600 3225900 2378800 3046600 1868600 3003600 243960 4109900 3280500 3482300 2632500 2725200 3244800 2334500 2944500 7 7 5 7 7 7 7 7 7 7 7 968100 1412900 43878 1877000 2459600 2311300 1395600 1177800 1434600 1048900 1442900 901710 1320100 140550 1888600 2334200 2302300 1472500 1250800 1458100 1029800 1391700 3 3 1 3 3 3 3 3 3 3 3 1038200 1802600 19443 2223300 981830 1080400 1131100 1473800 1791300 1329900 1603700 966850 1683600 103410 2221300 946350 1179900 1160000 1474300 1786700 1304700 1552800 4 4 4 4 4 4 4 4 4 4 4 280920000 193220000 87695000 7145 1663 6655 38597;38598;38599;38600;38601;38602 46360;46361;46362;46363;46364;46365;46366 46366 2225 7 GNAMVEEGHFAAEDVK Unmodified 1702.7621 0.7620845 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 43.701 43.743 3 8.3332E-06 13426 20211116_3430_TMUAki_TMT10x_P_F3 98.062 80.362 1063800 1582000 0 2211300 3109700 2137600 1647300 1028000 972040 923520 1459000 990450 1478500 109370 2210300 2944400 2157200 1726500 1098000 1035700 906260 1392400 1 1 0 1 1 1 1 1 1 1 1 1063800 1582000 0 2211300 3109700 2137600 1647300 1028000 972040 923520 1459000 990450 1478500 109370 2210300 2944400 2157200 1726500 1098000 1035700 906260 1392400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 79671000 79671000 0 7146 1663 6655 38603 46367 46367 1 GNDISSGTVLSDYVGSGPPK Unmodified 1948.9378 0.93780026 867 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 0 0 0 0 By MS/MS By MS/MS 5.08 0.917 1 2 5 5 7 6 62.431 62.456 2;3;4 1.0936E-60 18555 20211116_3434_TMUAki_TMT10x_P_F6 257.54 225.04 119870000 195600000 1045300 208610000 143860000 182700000 140400000 128720000 122060000 128130000 150910000 111610000 182570000 10651000 211510000 137880000 186510000 142020000 133580000 126000000 125160000 144680000 20 20 12 20 20 20 20 20 20 20 20 63942000 103980000 602560 111220000 82214000 128820000 85474000 65203000 64127000 67029000 78599000 59537000 97053000 5615600 113210000 78916000 128720000 85869000 69560000 66686000 65389000 75373000 11 11 6 11 11 11 11 11 11 11 11 55926000 91621000 442750 97397000 61647000 53876000 54922000 63521000 57937000 61097000 72310000 52075000 85513000 5035100 98302000 58962000 57787000 56155000 64024000 59319000 59770000 69310000 9 9 6 9 9 9 9 9 9 9 9 18909000000 10113000000 8795300000 7147 867 6656 38604;38605;38606;38607;38608;38609;38610;38611;38612;38613;38614;38615;38616 46368;46369;46370;46371;46372;46373;46374;46375;46376;46377;46378;46379;46380;46381;46382;46383;46384;46385;46386;46387 46378 20 GNDISSGTVLSDYVGSGPPKGTGLHR Unmodified 2570.2725 0.27249305 867 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 0 0 0 1 By MS/MS 7.5 0.5 1 1 2 51.554 51.937 4 1.503E-23 16074 20211116_3435_TMUAki_TMT10x_P_F7 152.35 143.25 1778600 3382300 0 3540600 3673400 5185200 2991900 3118900 3058900 2851200 2760400 1655700 3156700 136320 3625400 3502700 5134400 3072500 3267400 3098400 2795700 2672100 1 1 0 1 1 1 1 1 1 1 1 1778600 3382300 0 3540600 3673400 5185200 2991900 3118900 3058900 2851200 2760400 1655700 3156700 136320 3625400 3502700 5134400 3072500 3267400 3098400 2795700 2672100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 984770000 984770000 0 7148 867 6657 38617;38618 46388 46388 1 GNDTFVTLDEILR Unmodified 1491.7569 0.75692277 1130 P49959;P49959-2;P49959-3 MRE11A Double-strand break repair protein MRE11A yes no 0 0 0 0 By matching By MS/MS 3 0.816 1 1 1 2 1 77.996 77.934 2 0.0022909 26255 20211116_3442_TMUAki_TMT10x_S_F4 75.618 51.768 4408600 7231900 0 6843300 5561100 5266600 5900400 4693800 4595200 4921400 5354500 4104400 6746700 331330 6985200 5337500 5449700 5926800 4808000 4758900 4797100 5141800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4408600 7231900 0 6843300 5561100 5266600 5900400 4693800 4595200 4921400 5354500 4104400 6746700 331330 6985200 5337500 5449700 5926800 4808000 4758900 4797100 5141800 1 1 0 1 1 1 1 1 1 1 1 1862700000 1246100000 616610000 7149 1130 6658 38619;38620;38621 46389 46389 1 GNEEAQIFRPLK Unmodified 1400.7412 0.74121312 1757 Q15029;Q15029-2;Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 1 By MS/MS By MS/MS 5.5 1.12 2 2 2 2 4 4 47.445 47.693 3 1.39E-12 12481 20211116_3434_TMUAki_TMT10x_P_F6 177.12 148.91 34795000 55367000 249300 70467000 58563000 56754000 36491000 53874000 56732000 47311000 53329000 32398000 51720000 3272600 70616000 55602000 58598000 38795000 54724000 56709000 46477000 51550000 6 6 4 6 6 6 6 6 6 6 6 15779000 25338000 21426 31726000 45472000 44049000 23977000 24443000 25248000 20963000 23379000 14691000 23667000 1574900 32099000 43050000 43673000 25484000 25737000 25564000 20617000 22610000 3 3 2 3 3 3 3 3 3 3 3 19016000 30029000 227870 38741000 13092000 12705000 12514000 29431000 31484000 26348000 29950000 17707000 28053000 1697700 38517000 12552000 14925000 13311000 28987000 31145000 25860000 28939000 3 3 2 3 3 3 3 3 3 3 3 4534800000 2971000000 1563800000 7150 1757 6659 38622;38623;38624;38625;38626;38627;38628;38629 46390;46391;46392;46393;46394;46395 46391 6 GNEFEDYCLKR Unmodified 1429.6296 0.62961376 810 P26196 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 0 0 0 1 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 43.078 43.195 3 1.2678E-06 11998 20211116_3442_TMUAki_TMT10x_S_F4 128.57 109.76 14486000 21585000 191820 33936000 29491000 24614000 14544000 19906000 24590000 18045000 23165000 13490000 20187000 1577600 33609000 27912000 25545000 15845000 20421000 24526000 17700000 22391000 5 5 4 5 5 5 5 5 5 5 5 7489700 11172000 118390 17430000 25802000 20348000 10975000 10188000 12433000 9458100 11837000 6974600 10448000 987750 17384000 24374000 20321000 11953000 10849000 12563000 9267300 11437000 3 3 3 3 3 3 3 3 3 3 3 6996600 10413000 73434 16506000 3688800 4266400 3569100 9718200 12158000 8586900 11328000 6515000 9738900 589880 16225000 3537600 5223800 3892400 9571800 11963000 8433000 10953000 2 2 1 2 2 2 2 2 2 2 2 1237900000 903140000 334790000 7151 810 6660 38630;38631;38632;38633;38634 46396;46397;46398;46399;46400 46399 5 GNEFFCEVDEDYIQDK Unmodified 2006.8204 0.82038724 1412 P67870 CSNK2B Casein kinase II subunit beta yes yes 0 0 0 0 By MS/MS By MS/MS 2 1.15 3 1 1 1 1 5 73.313 73.189 2;3 1.1495E-43 23480 20211116_3428_TMUAki_TMT10x_P_F1 237.41 229.55 20331000 32045000 282440 39500000 19388000 16657000 20281000 11980000 11701000 13029000 20108000 18932000 29929000 1880900 39428000 18627000 18273000 20259000 12448000 12578000 12681000 19137000 6 6 4 6 6 6 6 6 6 6 6 5954100 8632900 0 11053000 4122900 5463100 4150700 2136900 2497300 2765800 4852000 5543400 8064400 415340 11021000 3950500 5835500 4157600 2359400 2696500 2675300 4607600 1 1 0 1 1 1 1 1 1 1 1 14377000 23412000 282440 28447000 15266000 11194000 16130000 9843100 9204000 10263000 15256000 13388000 21864000 1465600 28407000 14676000 12437000 16102000 10089000 9881300 10006000 14530000 5 5 4 5 5 5 5 5 5 5 5 5371100000 953870000 4417300000 7152 1412 6661 38635;38636;38637;38638;38639;38640 46401;46402;46403;46404;46405;46406;46407 46401 7 GNEIVLSAGSTPR Unmodified 1299.6783 0.67827852 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.92 0.954 1 3 4 4 6 6 39.56 39.615 2;3 2.4708E-19 11027 20211116_3430_TMUAki_TMT10x_P_F3 194.7 145.27 7690800 12046000 11937 13267000 12577000 11952000 8597300 8325100 8492000 7905500 10152000 7159800 11245000 565780 13429000 11950000 12176000 8925500 8634900 8702700 7738200 9741700 10 10 2 10 10 10 10 10 10 10 10 4545700 6978100 0 7554800 9304500 9221300 5403700 4753800 4920800 4707200 5940600 4231600 6513500 332320 7691300 8816300 9190800 5670300 5057400 5063400 4599200 5699100 4 4 0 4 4 4 4 4 4 4 4 3145100 5067800 11937 5712300 3272700 2731000 3193600 3571300 3571200 3198300 4211200 2928100 4731200 233460 5737400 3134200 2984900 3255200 3577500 3639300 3139000 4042600 6 6 2 6 6 6 6 6 6 6 6 974870000 555460000 419410000 7153 1695 6662 38641;38642;38643;38644;38645;38646;38647;38648;38649;38650;38651;38652 46408;46409;46410;46411;46412;46413;46414;46415;46416;46417;46418;46419 46409 12 GNENANGAPAITLLIR Unmodified 1622.874 0.87401821 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 0 0 By MS/MS By MS/MS 6.25 0.433 3 1 1 3 62.981 63.139 2;3 2.153E-52 18844 20211116_3434_TMUAki_TMT10x_P_F6 266.75 192.45 10680000 17369000 12073 16762000 11729000 15759000 12177000 10975000 11142000 11681000 12442000 9943600 16205000 827670 17128000 11253000 16009000 12296000 11421000 11427000 11379000 11962000 4 4 2 4 4 4 4 4 4 4 4 5899300 9027000 0 8731000 6295300 10883000 6694600 6054100 5895700 6273700 6742400 5492200 8422100 410900 8960100 6040800 10845000 6745100 6405700 6062900 6118100 6477900 2 2 0 2 2 2 2 2 2 2 2 4780800 8342100 12073 8031400 5434200 4876900 5482500 4920500 5246400 5407400 5700000 4451500 7782900 416760 8168200 5212500 5163800 5551300 5015200 5363800 5261100 5484500 2 2 2 2 2 2 2 2 2 2 2 1822000000 526800000 1295200000 7154 3317 6663 38653;38654;38655;38656 46420;46421;46422;46423;46424 46420 5 GNEVLYNGFTGR Unmodified 1325.6364 0.6364137 881 P30876 POLR2B DNA-directed RNA polymerase II subunit RPB2 yes yes 0 0 0 0 By MS/MS 5 0 1 1 48.582 48.761 2 0.0033816 13025 20211116_3444_TMUAki_TMT10x_S_F5 68.676 49.578 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7155 881 6664 38657 46425 46425 1 GNFGGSFAGSFGGAGGHAPGVAR Unmodified 2033.9456 0.94562002 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS By MS/MS 4 2.07 2 2 3 2 2 2 1 1 8 7 48.039 48.016 3;4 1.6004E-77 14733 20211116_3429_TMUAki_TMT10x_P_F2 263.9 252.8 37157000 63030000 553990 69180000 47531000 66043000 39800000 54987000 53179000 50221000 52979000 34600000 58837000 3050800 70094000 45406000 67225000 41189000 56322000 53508000 49245000 51113000 31 31 15 31 31 31 31 31 31 31 31 18074000 29536000 160470 32469000 29910000 48408000 24741000 25861000 25342000 24088000 24765000 16830000 27571000 1662200 33155000 28554000 47825000 25385000 27378000 25734000 23599000 23908000 15 15 6 15 15 15 15 15 15 15 15 19082000 33494000 393520 36711000 17621000 17635000 15059000 29126000 27837000 26133000 28215000 17770000 31266000 1388600 36939000 16852000 19400000 15805000 28944000 27774000 25646000 27206000 16 16 9 16 16 16 16 16 16 16 16 28411000000 16082000000 12329000000 7156 1171 6665 38658;38659;38660;38661;38662;38663;38664;38665;38666;38667;38668;38669;38670;38671;38672 46426;46427;46428;46429;46430;46431;46432;46433;46434;46435;46436;46437;46438;46439;46440;46441;46442;46443;46444;46445;46446;46447;46448;46449;46450;46451;46452;46453;46454;46455;46456;46457 46430 32 GNFLEIK Unmodified 819.44905 0.44905385 1735 Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 55.308 55.397 2 0.022711 15650 20211116_3434_TMUAki_TMT10x_P_F6 81.548 22.343 4599800 7114800 0 8802300 3697300 3865800 3990500 5566200 6875100 5562300 6910700 4282500 6645200 323620 8786800 3549600 4280900 4121700 5573400 6869300 5432600 6665400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4599800 7114800 0 8802300 3697300 3865800 3990500 5566200 6875100 5562300 6910700 4282500 6645200 323620 8786800 3549600 4280900 4121700 5573400 6869300 5432600 6665400 1 1 0 1 1 1 1 1 1 1 1 188910000 0 188910000 7157 1735 6666 38673;38674 46458;46459 46458 2 GNFNYIEFTR Unmodified 1259.5935 0.59348625 145 O14950;P19105 MYL12B;MYL12A Myosin regulatory light chain 12B;Myosin regulatory light chain 12A yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 57.526 57.872 2 1.8797E-09 18450 20211116_3435_TMUAki_TMT10x_P_F7 183 165.62 33227000 57685000 104280 57455000 45303000 55264000 40939000 52806000 48361000 47726000 50295000 30934000 53825000 2450400 58597000 43298000 56380000 41984000 53662000 48943000 46821000 48458000 5 5 2 5 5 5 5 5 5 5 5 13418000 22046000 18329 22093000 20503000 34496000 20046000 20698000 19244000 19035000 19461000 12492000 20572000 1107700 22721000 19641000 34067000 20333000 21691000 19620000 18659000 18767000 2 2 1 2 2 2 2 2 2 2 2 19809000 35639000 85950 35362000 24800000 20769000 20893000 32108000 29117000 28690000 30834000 18441000 33254000 1342700 35877000 23657000 22313000 21651000 31970000 29323000 28161000 29691000 3 3 1 3 3 3 3 3 3 3 3 10139000000 5875200000 4263500000 7158 145 6667 38675;38676;38677;38678 46460;46461;46462;46463;46464 46461 5 GNFTLPEVAECFDEITYVELQK Unmodified 2601.2309 0.23087074 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 By MS/MS 4 0 1 1 81.77 81.76 3 6.4886E-05 27775 20211116_3442_TMUAki_TMT10x_S_F4 64.589 50.428 1230100 2152300 25522 1793700 1882300 1648600 1936500 1610400 1691900 1786800 1813800 1145500 2007000 134900 1853100 1807700 1687600 1953900 1644500 1736300 1737800 1745900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1230100 2152300 25522 1793700 1882300 1648600 1936500 1610400 1691900 1786800 1813800 1145500 2007000 134900 1853100 1807700 1687600 1953900 1644500 1736300 1737800 1745900 1 1 1 1 1 1 1 1 1 1 1 388590000 0 388590000 7159 1474 6668 38679 46465 46465 1 GNFTLPEVAECFDEITYVELQKEEAQK Unmodified 3186.5067 0.50671125 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 1 By MS/MS By MS/MS 2.68 1.22 4 5 4 5 1 10 9 80.352 80.333 3;4;5 5.4845E-42 27874 20211116_3429_TMUAki_TMT10x_P_F2 189.39 179.93 81696000 157110000 1858500 102320000 125230000 202890000 140720000 147450000 136720000 159660000 142360000 76078000 146390000 8112500 109760000 120560000 199240000 141810000 153080000 139470000 155430000 137160000 23 23 9 23 23 23 23 23 23 23 23 45158000 84420000 785790 54612000 51745000 132360000 72426000 77013000 75843000 86061000 73958000 42051000 78661000 3718300 58981000 50168000 128800000 72489000 81366000 76941000 83679000 71403000 12 12 4 12 12 12 12 12 12 12 12 36538000 72689000 1072700 47713000 73489000 70533000 68294000 70438000 60879000 73600000 68403000 34027000 67733000 4394200 50781000 70389000 70445000 69316000 71716000 62526000 71751000 65753000 11 11 5 11 11 11 11 11 11 11 11 39330000000 22024000000 17306000000 7160 1474 6669 38680;38681;38682;38683;38684;38685;38686;38687;38688;38689;38690;38691;38692;38693;38694;38695;38696;38697;38698 46466;46467;46468;46469;46470;46471;46472;46473;46474;46475;46476;46477;46478;46479;46480;46481;46482;46483;46484;46485;46486;46487;46488 46469 23 GNGTSMISLIIPPKDQISR Oxidation (M) 2042.083 0.083024708 1360 P62495 ETF1 Eukaryotic peptide chain release factor subunit 1 yes yes 0 0 1 1 By MS/MS 2 0 1 1 56.835 56.62 3 0.0029265 17017 20211116_3440_TMUAki_TMT10x_S_F2 62.468 45.784 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7161 1360 6670 38699 46489 46489 1824 1 GNIIISTPEKWDILSR Unmodified 1841.0047 0.0046980325 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 70.362 70.251 3 1.7251E-07 22242 20211116_3428_TMUAki_TMT10x_P_F1 112.44 98.454 68580000 108660000 681680 103030000 74042000 86084000 84498000 49876000 46255000 57938000 82595000 63856000 101370000 5871600 105250000 71265000 87928000 83979000 52779000 50019000 56254000 78552000 6 6 4 6 6 6 6 6 6 6 6 28537000 44788000 163370 41157000 32167000 49274000 39118000 22459000 20824000 25485000 33831000 26571000 41779000 2544300 42365000 31026000 49094000 38749000 24278000 22447000 24765000 32233000 2 2 1 2 2 2 2 2 2 2 2 40044000 63872000 518310 61874000 41875000 36810000 45380000 27417000 25431000 32454000 48764000 37285000 59592000 3327300 62888000 40239000 38835000 45230000 28501000 27573000 31488000 46319000 4 4 3 4 4 4 4 4 4 4 4 4077800000 1767600000 2310200000 7162 352 6671 38700;38701;38702 46490;46491;46492;46493;46494;46495 46490 6 GNKPWISLPR Unmodified 1166.656 0.65602693 1362 P62701 RPS4X 40S ribosomal protein S4, X isoform yes yes 0 0 0 1 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 47.995 48.038 3 6.5598E-05 15221 20211116_3430_TMUAki_TMT10x_P_F3 121.02 81.399 76142000 126470000 385960 166330000 187020000 125840000 98698000 46801000 45787000 52904000 103500000 70890000 118160000 7199600 166260000 177060000 128920000 103090000 51756000 50943000 51418000 98055000 7 7 6 7 7 7 7 7 7 7 7 48130000 77474000 250120 99503000 164570000 114370000 85100000 27222000 27352000 31321000 61980000 44808000 72374000 4828500 100180000 155750000 113640000 88688000 32198000 31582000 30421000 58718000 4 4 3 4 4 4 4 4 4 4 4 28011000 48994000 135840 66829000 22452000 11464000 13598000 19580000 18435000 21583000 41518000 26082000 45783000 2371100 66089000 21314000 15277000 14406000 19558000 19362000 20997000 39337000 3 3 3 3 3 3 3 3 3 3 3 6905900000 4765500000 2140400000 7163 1362 6672 38703;38704;38705;38706;38707;38708 46496;46497;46498;46499;46500;46501;46502 46496 7 GNLANVIR Unmodified 855.49265 0.49265 639;502;638 P05141;Q9H0C2;P12235;P12236 SLC25A5;SLC25A31;SLC25A4;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS 7 0.756 2 3 2 3 4 36.546 36.889 2 0.00055803 9751 20211116_3446_TMUAki_TMT10x_S_F7 138.24 75.525 5360000 8588900 35682 9015200 10290000 8116200 5763900 5354900 5594900 5290700 7256700 4990300 8016000 467510 9153500 9749700 8261600 6078000 5582000 5758200 5169800 6948900 12 12 7 12 12 12 12 12 12 12 12 3155100 5048700 10376 5281300 8525800 6400500 3693000 3337400 3603300 3315800 4397600 2937200 4711900 272820 5388100 8049300 6382500 3995900 3547200 3697800 3239200 4217700 3 3 1 3 3 3 3 3 3 3 3 2204900 3540200 25306 3733900 1764100 1715700 2070900 2017500 1991700 1974900 2859100 2053100 3304100 194680 3765300 1700400 1879100 2082100 2034800 2060400 1930500 2731200 9 9 6 9 9 9 9 9 9 9 9 383160000 251480000 131680000 7164 502;638;639 6673 38709;38710;38711;38712;38713;38714;38715 46503;46504;46505;46506;46507;46508;46509;46510;46511;46512;46513;46514 46512 12 GNLQLLQNCLAVLNGDT Unmodified 1841.9305 0.93054681 3192 Q9UNH7;Q9UNH7-2 SNX6 Sorting nexin-6;Sorting nexin-6, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 1 4 80.763 80.773 2;3 1.1031E-10 28517 20211116_3446_TMUAki_TMT10x_S_F7 130.94 129.24 818560 1405700 0 1206600 1074900 1021400 996250 764640 779540 807830 1048400 762160 1310900 0 1242300 1028700 1046200 1007900 791690 812070 787190 1003100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 818560 1405700 0 1206600 1074900 1021400 996250 764640 779540 807830 1048400 762160 1310900 0 1242300 1028700 1046200 1007900 791690 812070 787190 1003100 1 1 0 1 1 1 1 1 1 1 1 712270000 0 712270000 7165 3192 6674 38716;38717;38718;38719;38720 46515;46516;46517 46516 3 GNLYSFGCPEYGQLGHNSDGK Unmodified 2298.9964 0.99639455 3056 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 53.971 53.988 3 3.0265E-28 15239 20211116_3447_TMUAki_TMT10x_S_F8 179.69 175.46 3925600 7294700 0 7911400 4465200 5196800 3585500 6374000 5377600 5938400 5737600 3654900 6809000 305460 7986800 4257500 5488000 3738400 6408200 5405200 5817700 5523800 3 3 0 3 3 3 3 3 3 3 3 893180 1689300 0 1839400 1596800 2492300 1471900 1328500 1271200 1346100 1212200 831520 1576800 68280 1875600 1527000 2472500 1493400 1410000 1300000 1313900 1171200 1 1 0 1 1 1 1 1 1 1 1 3032400 5605400 0 6072000 2868400 2704500 2113600 5045500 4106400 4592300 4525500 2823400 5232200 237180 6111200 2730600 3015500 2245100 4998200 4105200 4503800 4352600 2 2 0 2 2 2 2 2 2 2 2 969670000 648980000 320680000 7166 3056 6675 38721;38722;38723 46518;46519;46520;46521 46520 4 GNNVLYISTQK Unmodified 1235.651 0.65100113 1352 P62312 LSM6 U6 snRNA-associated Sm-like protein LSm6 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 4 2 2 48.947 48.848 2;3 8.5429E-28 13718 20211116_3436_TMUAki_TMT10x_P_F8 236.92 190.91 1471600 2481700 28741 2502800 1335500 1434100 1387200 3113700 2999800 2603800 2340900 1370400 2315700 146880 2535800 1283600 1564700 1454300 3065800 2957800 2564000 2278600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1471600 2481700 28741 2502800 1335500 1434100 1387200 3113700 2999800 2603800 2340900 1370400 2315700 146880 2535800 1283600 1564700 1454300 3065800 2957800 2564000 2278600 1 1 1 1 1 1 1 1 1 1 1 252360000 0 252360000 7167 1352 6676 38724;38725;38726;38727 46522;46523;46524;46525 46523 4 GNPTVEVDLFTSK Unmodified 1405.7089 0.70890994 520 P06733 ENO1 Alpha-enolase yes yes 0 0 0 0 By MS/MS By MS/MS 4.9 1.91 4 4 4 6 10 9 14 21 30 51.324 51.318 2;3 3.9233E-78 19865 20211116_3445_TMUAki_TMT10x_S_F6 340.88 60.499 386320000 606820000 3066700 633820000 452200000 598780000 449840000 426690000 406610000 424080000 488280000 359700000 566320000 33240000 644170000 433550000 608290000 455070000 442430000 418450000 414290000 468500000 55 55 28 55 55 55 55 55 55 55 55 239520000 368990000 2042500 393430000 289860000 452840000 290290000 262580000 255920000 263680000 303430000 223020000 344400000 21413000 400530000 277990000 453380000 293370000 276610000 263550000 257480000 291240000 27 27 14 27 27 27 27 27 27 27 27 146800000 237820000 1024200 240390000 162340000 145940000 159550000 164100000 150690000 160400000 184850000 136680000 221920000 11827000 243640000 155550000 154900000 161710000 165820000 154900000 156810000 177260000 28 28 14 28 28 28 28 28 28 28 28 159060000000 84301000000 74757000000 7168 520 6677 38728;38729;38730;38731;38732;38733;38734;38735;38736;38737;38738;38739;38740;38741;38742;38743;38744;38745;38746;38747;38748;38749;38750;38751;38752;38753;38754;38755;38756;38757;38758;38759;38760;38761;38762;38763;38764;38765;38766;38767;38768;38769;38770;38771;38772;38773;38774;38775;38776;38777;38778 46526;46527;46528;46529;46530;46531;46532;46533;46534;46535;46536;46537;46538;46539;46540;46541;46542;46543;46544;46545;46546;46547;46548;46549;46550;46551;46552;46553;46554;46555;46556;46557;46558;46559;46560;46561;46562;46563;46564;46565;46566;46567;46568;46569;46570;46571;46572;46573;46574;46575;46576;46577;46578;46579;46580;46581;46582;46583;46584 46579 59 GNPTVEVDLHTAK Unmodified 1379.7045 0.70449327 661 P13929;P13929-3;P13929-2 ENO3 Beta-enolase yes no 0 0 0 0 By MS/MS By MS/MS 3.82 0.785 2 1 12 2 3 14 35.861 35.89 3 8.3213E-24 12920 20211116_3441_TMUAki_TMT10x_S_F3 217.19 183.01 20832000 33249000 244080 37037000 29075000 27428000 22374000 23030000 21885000 20461000 28302000 19398000 31039000 2009900 37373000 27721000 28435000 23031000 23561000 22513000 20089000 27103000 17 17 10 17 17 17 17 17 17 17 17 8658000 13498000 121870 14623000 16169000 16789000 9250800 8948000 8452600 8044100 10849000 8062200 12599000 917840 14870000 15336000 16793000 9720500 9466300 8719000 7893600 10392000 3 3 2 3 3 3 3 3 3 3 3 12174000 19751000 122210 22414000 12905000 10639000 13124000 14082000 13432000 12417000 17452000 11335000 18440000 1092000 22502000 12385000 11642000 13310000 14094000 13794000 12195000 16711000 14 14 8 14 14 14 14 14 14 14 14 2229200000 1501300000 727930000 7169 661 6678 38779;38780;38781;38782;38783;38784;38785;38786;38787;38788;38789;38790;38791;38792;38793;38794;38795 46585;46586;46587;46588;46589;46590;46591;46592;46593;46594;46595;46596;46597;46598;46599;46600;46601;46602;46603;46604;46605;46606 46589 22 GNPTVEVDLYTAK Unmodified 1405.7089 0.70890994 568 P09104;P09104-2 ENO2 Gamma-enolase yes no 0 0 0 0 By MS/MS By MS/MS 3.62 1.27 1 2 2 4 4 7 6 55.688 55.682 2;3 1.022E-45 17162 20211116_3442_TMUAki_TMT10x_S_F4 296.32 60.164 63105000 98086000 559790 108310000 83799000 92766000 66423000 72310000 63846000 70500000 81019000 58759000 91563000 5767200 109540000 79929000 95003000 68205000 74498000 65675000 68929000 77624000 15 15 9 15 15 15 15 15 15 15 15 31197000 47178000 324790 52882000 46594000 64467000 34029000 34959000 31426000 34119000 38982000 29049000 44044000 2979500 53719000 44372000 64297000 35093000 37008000 32353000 33357000 37370000 7 7 5 7 7 7 7 7 7 7 7 31907000 50907000 235000 55432000 37204000 28299000 32394000 37351000 32420000 36381000 42037000 29709000 47519000 2787800 55825000 35557000 30707000 33111000 37490000 33322000 35572000 40254000 8 8 4 8 8 8 8 8 8 8 8 10246000000 5798900000 4446800000 7170 568 6679 38796;38797;38798;38799;38800;38801;38802;38803;38804;38805;38806;38807;38808 46607;46608;46609;46610;46611;46612;46613;46614;46615;46616;46617;46618;46619;46620;46621;46622 46618 16 GNRPAILTYHDVGLNHK Unmodified 1904.0017 0.0016783401 3171 Q9ULP0;Q9ULP0-2;Q9ULP0-6;Q9ULP0-4;Q9ULP0-8;Q9ULP0-7;Q9ULP0-3 NDRG4 Protein NDRG4 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 37.136 37.093 5 7.1613E-11 8762 20211116_3428_TMUAki_TMT10x_P_F1 130.47 110.89 1447600 2673500 21562 2847300 2665300 2431900 1835600 1766700 1733400 1605800 1991500 1348000 2495300 157170 2886200 2536100 2488100 1902200 1825000 1777100 1575000 1913200 2 2 2 2 2 2 2 2 2 2 2 817590 1530800 5794.4 1531800 2022100 1861200 1194500 1039000 1026800 901780 1144200 761300 1428400 90054 1567500 1918400 1857300 1249700 1093700 1056100 886380 1100200 1 1 1 1 1 1 1 1 1 1 1 629990 1142800 15768 1315500 643270 570690 641140 727700 706630 704040 847300 586700 1067000 67111 1318700 617700 630860 652470 731240 721000 688580 813000 1 1 1 1 1 1 1 1 1 1 1 165920000 102870000 63042000 7171 3171 6680 38809;38810 46623;46624 46623 2 GNRPVILTYHDIGLNHK Unmodified 1946.0486 0.048628533 3110 Q9UGV2;Q9UGV2-2 NDRG3 Protein NDRG3 yes no 0 0 0 1 By MS/MS By MS/MS 2.4 1.02 1 2 1 1 2 3 41.377 41.311 5 4.1064E-36 10496 20211116_3428_TMUAki_TMT10x_P_F1 212.95 184.98 3565600 6203000 31770 7821300 8412500 7114400 4363100 4560900 4298000 4690500 4534700 3319900 5794100 356020 7854100 7964000 7233900 4635400 4770000 4383700 4575700 4367100 3 3 2 3 3 3 3 3 3 3 3 2723000 4820800 29399 6098900 7727700 6465100 3803600 3518800 3273700 3781400 3354800 2535300 4503100 286160 6137100 7310400 6497400 4046900 3734200 3356500 3682300 3233800 2 2 1 2 2 2 2 2 2 2 2 842620 1382200 2370.6 1722400 684800 649350 559550 1042200 1024300 909120 1179800 784580 1291000 69858 1717000 653610 736520 588510 1035800 1027300 893380 1133300 1 1 1 1 1 1 1 1 1 1 1 1961100000 1235900000 725130000 7172 3110 6681 38811;38812;38813;38814;38815 46625;46626;46627 46625 3 GNSIIMLEALERV Oxidation (M) 1459.7705 0.77046434 25 P62308;A8MWD9 SNRPG;SNRPGP15 Small nuclear ribonucleoprotein G;Putative small nuclear ribonucleoprotein G-like protein 15 yes no 0 0 1 1 By MS/MS By MS/MS 4 0.756 2 3 2 4 3 69.695 69.641 2;3 0.00019515 22306 20211116_3431_TMUAki_TMT10x_P_F4 88.338 73.575 18594000 32870000 40572 26511000 22849000 32394000 23052000 27947000 28816000 26663000 27116000 17312000 30647000 1433500 27583000 21903000 32538000 23551000 28600000 29003000 26093000 26211000 6 6 1 6 6 6 6 6 6 6 6 9071100 14760000 0 13059000 8783900 19197000 10250000 12306000 13072000 12037000 12458000 8445400 13766000 655420 13534000 8453300 19023000 10408000 12852000 13153000 11767000 12036000 3 3 0 3 3 3 3 3 3 3 3 9523100 18110000 40572 13453000 14065000 13197000 12802000 15640000 15744000 14626000 14658000 8866300 16881000 778050 14049000 13449000 13515000 13143000 15748000 15850000 14326000 14174000 3 3 1 3 3 3 3 3 3 3 3 5010600000 2846900000 2163700000 7173 25 6682 38816;38817;38818;38819;38820;38821;38822 46628;46629;46630;46631;46632;46633;46634;46635 46629 14 8 GNSIIMLEALERV Unmodified 1443.7755 0.77554972 25 P62308;A8MWD9 SNRPG;SNRPGP15 Small nuclear ribonucleoprotein G;Putative small nuclear ribonucleoprotein G-like protein 15 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 78.479 78.491 2 1.6801E-08 25186 20211116_3444_TMUAki_TMT10x_S_F5 120.9 96.041 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7174 25 6682 38823;38824 46636;46637 46637 2 GNSLFAEVEDRR Unmodified 1391.6793 0.67934115 2439 Q96EA4;Q96EA4-3 SPDL1 Protein Spindly yes no 0 0 0 1 By MS/MS 3 0 1 1 43.807 43.841 3 2.1939E-06 13485 20211116_3430_TMUAki_TMT10x_P_F3 117.77 96.989 638230 921450 0 1090600 1213600 1365900 766280 701990 724990 643670 823430 594210 860440 55104 1104800 1152100 1359600 799380 745490 742860 631040 791280 1 1 0 1 1 1 1 1 1 1 1 638230 921450 0 1090600 1213600 1365900 766280 701990 724990 643670 823430 594210 860440 55104 1104800 1152100 1359600 799380 745490 742860 631040 791280 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72357000 72357000 0 7175 2439 6683 38825 46638 46638 1 GNSLQEILER Unmodified 1157.6041 0.60405094 1467 Q00341 HDLBP Vigilin yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 53.81 53.724 2 0.00047751 16350 20211116_3442_TMUAki_TMT10x_S_F4 107.51 84.46 17367000 27667000 592400 31893000 22043000 25206000 18949000 21735000 21312000 20050000 23251000 16175000 25832000 2057400 32138000 21094000 26013000 19456000 22223000 21647000 19651000 22370000 5 5 5 5 5 5 5 5 5 5 5 7398000 12004000 243010 13606000 12658000 16177000 10231000 9022600 9043600 8659200 9582100 6890100 11207000 913490 13805000 12091000 16160000 10468000 9523700 9271400 8472000 9226800 2 2 2 2 2 2 2 2 2 2 2 9968900 15663000 349390 18288000 9385300 9029700 8718100 12712000 12268000 11390000 13669000 9284600 14625000 1143900 18333000 9003400 9852600 8987900 12699000 12375000 11179000 13143000 3 3 3 3 3 3 3 3 3 3 3 1148100000 538720000 609340000 7176 1467 6684 38826;38827;38828;38829 46639;46640;46641;46642;46643 46643 5 GNSPPSSGEACREEK Unmodified 1603.6896 0.68964784 997 P41227;P41227-2 NAA10 N-alpha-acetyltransferase 10 yes no 0 0 0 1 By MS/MS 3 0 1 1 26.848 26.555 3 0.0049624 7749 20211116_3441_TMUAki_TMT10x_S_F3 60.55 48.631 58192 120060 0 80607 59063 69124 57448 41871 41876 53752 73411 54177 111880 1665.8 84848 56549 70515 57874 44303 44402 52008 69841 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 58192 120060 0 80607 59063 69124 57448 41871 41876 53752 73411 54177 111880 1665.8 84848 56549 70515 57874 44303 44402 52008 69841 2 2 0 2 2 2 2 2 2 2 2 1419400 0 1419400 7177 997 6685 38830 46644;46645 46645 2 GNSSESIEAIREYEEEFFQNSK Unmodified 2592.1616 0.1616052 264 O60313;O60313-2;O60313-13;O60313-9;O60313-11;O60313-10 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 77.3 77.274 3 4.3237E-14 25180 20211116_3428_TMUAki_TMT10x_P_F1 127.28 106.47 2923700 5248000 0 4782200 2692100 5370700 3446200 2909100 3094400 3077600 3502000 2722100 4895200 220710 4920400 2599100 5379700 3445300 3087000 3177900 2998800 3365600 1 1 0 1 1 1 1 1 1 1 1 2923700 5248000 0 4782200 2692100 5370700 3446200 2909100 3094400 3077600 3502000 2722100 4895200 220710 4920400 2599100 5379700 3445300 3087000 3177900 2998800 3365600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1123700000 1123700000 0 7178 264 6686 38831;38832 46646 46646 1 GNTAAQMAQILSFNK Oxidation (M) 1608.793 0.7929907 925 P35237 SERPINB6 Serpin B6 yes yes 0 0 1 0 By MS/MS 1 0 1 1 55.157 54.857 3 0.014541 18072 20211116_3439_TMUAki_TMT10x_S_F1 51.265 35.999 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7179 925 6687 38833 46647 46647 1163 1 GNTAAYLLYAFTR Unmodified 1459.746 0.74596415 1218 P54136;P54136-2 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By matching 5 0 2 1 1 78.638 78.652 2 0.0011946 26416 20211116_3433_TMUAki_TMT10x_P_F5 79.875 53.277 4769300 7534100 0 7464000 5162600 8773000 6178900 4504500 3603700 4539600 5016500 4439900 7029900 306060 7639000 4969500 8760700 6134700 4796300 3829000 4432100 4795500 1 1 0 1 1 1 1 1 1 1 1 4769300 7534100 0 7464000 5162600 8773000 6178900 4504500 3603700 4539600 5016500 4439900 7029900 306060 7639000 4969500 8760700 6134700 4796300 3829000 4432100 4795500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1224000000 669250000 554780000 7180 1218 6688 38834;38835 46648 46648 1 GNTHTEILK Unmodified 1011.5349 0.53490874 45 CON__P34955 yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 31.097 31.082 3 0.00031146 6788 20211116_3431_TMUAki_TMT10x_P_F4 110.53 21.238 + 1096400 1680400 14498 1454600 1793700 2049700 1496600 1444800 1703500 1377300 1487800 1021000 1567200 114180 1508800 1713300 2037800 1540000 1497500 1716400 1347900 1441900 2 2 2 2 2 2 2 2 2 2 2 1096400 1680400 14498 1454600 1793700 2049700 1496600 1444800 1703500 1377300 1487800 1021000 1567200 114180 1508800 1713300 2037800 1540000 1497500 1716400 1347900 1441900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 80773000 80773000 0 7181 45 6689 38836;38837 46649;46650 46649 2 GNVGFVFTK Unmodified 967.51272 0.51271674 508 P05388;P05388-2 RPLP0 60S acidic ribosomal protein P0 yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 58.072 57.912 2 3.3337E-05 19359 20211116_3439_TMUAki_TMT10x_S_F1 121.73 88.612 20152000 28838000 97481 36723000 22168000 31220000 20685000 20157000 29077000 24839000 25319000 18764000 26939000 1729000 36824000 21221000 31896000 21319000 21193000 29080000 24066000 24540000 3 3 1 3 3 3 3 3 3 3 3 13212000 18248000 97481 22664000 18509000 23954000 13946000 12999000 18990000 16156000 16305000 12302000 17043000 1223400 22828000 17636000 24077000 14541000 13864000 19003000 15649000 15812000 2 2 1 2 2 2 2 2 2 2 2 6939600 10591000 0 14059000 3659100 7266200 6739300 7157900 10087000 8683100 9013500 6461300 9895400 505590 13996000 3584400 7818900 6778600 7328800 10077000 8417500 8728200 1 1 0 1 1 1 1 1 1 1 1 1211500000 921360000 290140000 7182 508 6690 38838;38839;38840;38841 46651;46652;46653;46654 46653 4 GNVGFVFTKEDLTEIR Unmodified 1823.9418 0.94176342 508 P05388;P05388-2 RPLP0 60S acidic ribosomal protein P0 yes no 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 66.692 67.164 3 0.0077087 22894 20211116_3446_TMUAki_TMT10x_S_F7 56.906 40.026 24796000 48578000 315610 43791000 29079000 51803000 33182000 33010000 40362000 39813000 39703000 23088000 45311000 2210800 45132000 27991000 51857000 33665000 34714000 40724000 38603000 38320000 2 2 1 2 2 2 2 2 2 2 2 14163000 29981000 0 26744000 19414000 36046000 20599000 20551000 25248000 24021000 23873000 13186000 27964000 1048700 27651000 18632000 35800000 20977000 21780000 25434000 23318000 23072000 1 1 0 1 1 1 1 1 1 1 1 10633000 18597000 315610 17048000 9664700 15757000 12583000 12460000 15114000 15791000 15830000 9902500 17347000 1162100 17482000 9359400 16057000 12689000 12934000 15291000 15285000 15248000 1 1 1 1 1 1 1 1 1 1 1 5957900000 3388900000 2569000000 7183 508 6691 38842;38843 46655;46656 46656 2 GNVGIGGSAVPPPPIK Unmodified 1458.8195 0.81946344 2093 Q7Z739 YTHDF3 YTH domain-containing family protein 3 yes yes 0 0 0 0 By MS/MS 8 0 1 1 53.64 53.559 3 9.8199E-05 15068 20211116_3447_TMUAki_TMT10x_S_F8 80.632 52.305 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7184 2093 6692 38844 46657 46657 1 GNVGVVLFNFGK Unmodified 1249.6819 0.68190733 908 P33316;P33316-2 DUT Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 4 4 4 4 76.568 76.493 2;3 6.967E-24 25176 20211116_3431_TMUAki_TMT10x_P_F4 242.39 215.08 66771000 113990000 165960 102300000 67616000 95766000 84512000 58678000 62572000 67575000 78069000 62167000 106320000 5099600 105090000 65229000 97129000 84161000 61798000 65166000 65630000 74831000 11 11 4 11 11 11 11 11 11 11 11 30208000 48444000 82777 43616000 29368000 51320000 34563000 25249000 27422000 27823000 32576000 28125000 45185000 2307600 44951000 28278000 51221000 34566000 27064000 28393000 27067000 31265000 5 5 2 5 5 5 5 5 5 5 5 36563000 65542000 83187 58682000 38248000 44445000 49949000 33429000 35150000 39752000 45494000 34041000 61132000 2792000 60137000 36951000 45908000 49595000 34734000 36774000 38563000 43566000 6 6 2 6 6 6 6 6 6 6 6 8725600000 4844900000 3880800000 7185 908 6693 38845;38846;38847;38848;38849;38850;38851;38852 46658;46659;46660;46661;46662;46663;46664;46665;46666;46667;46668 46661 11 GNVPSSELQIYTWMDATLK Oxidation (M) 2168.046 0.0459705 85 O00422-2;O00422 SAP18 Histone deacetylase complex subunit SAP18 yes no 0 0 1 0 By MS/MS 7 0 1 1 75.155 75.262 3 3.0911E-05 26279 20211116_3446_TMUAki_TMT10x_S_F7 81.356 66.101 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7186 85 6694 38853 46669 46669 61 1 GNVQVVIPFLTESYSSSQDPPEK Unmodified 2520.2384 0.23839896 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By MS/MS By MS/MS 6 1.41 2 2 2 2 2 6 4 78.467 78.47 3 2.0513E-07 25107 20211116_3434_TMUAki_TMT10x_P_F6 86.625 76.568 32164000 52624000 33659 47586000 34615000 39924000 39053000 22233000 19589000 23970000 34740000 29944000 49085000 2210000 48786000 33270000 40747000 38779000 23550000 21318000 23339000 33043000 10 10 2 10 10 10 10 10 10 10 10 19200000 31125000 27334 28395000 17982000 28205000 23963000 13792000 11852000 14173000 20413000 17875000 29033000 1249800 29158000 17371000 28421000 23619000 14762000 12891000 13826000 19426000 6 6 1 6 6 6 6 6 6 6 6 12964000 21499000 6324.9 19190000 16633000 11719000 15090000 8441000 7737000 9796800 14327000 12069000 20052000 960140 19629000 15899000 12326000 15159000 8788300 8426700 9512200 13617000 4 4 1 4 4 4 4 4 4 4 4 14552000000 7778900000 6773100000 7187 769 6695 38854;38855;38856;38857;38858;38859;38860;38861;38862;38863 46670;46671;46672;46673;46674;46675;46676;46677 46672 8 GNWAHSGFPEIAFGR Unmodified 1644.7797 0.77972389 1183 P52701;P52701-3;P52701-4;P52701-2 MSH6 DNA mismatch repair protein Msh6 yes no 0 0 0 0 By MS/MS By matching 1 0 2 1 1 60.227 60.083 3 1.3675E-09 18119 20211116_3428_TMUAki_TMT10x_P_F1 123.63 113.57 4637700 7313900 19242 7358700 6282000 11712000 6933500 7819400 6714200 6285200 6540800 4318100 6824800 402330 7569000 6039500 11576000 6992100 8100700 6834000 6201600 6315000 2 2 1 2 2 2 2 2 2 2 2 4637700 7313900 19242 7358700 6282000 11712000 6933500 7819400 6714200 6285200 6540800 4318100 6824800 402330 7569000 6039500 11576000 6992100 8100700 6834000 6201600 6315000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 666270000 367670000 298600000 7188 1183 6696 38864;38865 46678;46679 46678 2 GNYGLLDQIQALR Unmodified 1459.7783 0.77832691 2176 Q9NZ94;Q8N0W4;Q8NFZ3;Q8NFZ4;Q8NFZ3-2;Q9NZ94-3;Q9NZ94-2;Q8N0W4-2 NLGN3;NLGN4X;NLGN4Y;NLGN2 Neuroligin-3;Neuroligin-4, X-linked;Neuroligin-4, Y-linked;Neuroligin-2 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 70.55 70.687 2 5.9136E-05 22001 20211116_3447_TMUAki_TMT10x_S_F8 100.07 44.056 7396100 11779000 37923 10647000 7945700 10707000 8448100 7361000 6714700 7113100 8836100 6885300 10986000 460930 10943000 7621000 10829000 8489400 7645600 6982200 6957200 8458200 2 2 1 2 2 2 2 2 2 2 2 4474800 6786700 0 6152000 3975800 7422600 4717000 4417600 4016300 4236300 5144700 4164900 6330400 168700 6339900 3818200 7415800 4724200 4637700 4156600 4144900 4928000 1 1 0 1 1 1 1 1 1 1 1 2921400 4991800 37923 4495100 3969900 3284800 3731100 2943400 2698300 2876800 3691300 2720400 4656000 292230 4602700 3802800 3413300 3765100 3007900 2825500 2812400 3530100 1 1 1 1 1 1 1 1 1 1 1 1272900000 562310000 710630000 7189 2176 6697 38866;38867 46680;46681 46681 2 GPACLVK Unmodified 743.4 0.39999517 2663 Q9BTE3;Q9BTE3-2;Q9BTE3-3 MCMBP Mini-chromosome maintenance complex-binding protein yes no 0 0 0 0 By MS/MS 7 0 1 1 38.136 38.574 2 0.031873 10782 20211116_3435_TMUAki_TMT10x_P_F7 74.832 45.259 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7190 2663 6698 38868 46682 46682 1 GPADSLSTAAGAAELSAEGAGK Unmodified 1929.928 0.92796385 2088 Q7Z5L9;Q7Z5L9-2 IRF2BP2 Interferon regulatory factor 2-binding protein 2 yes no 0 0 0 0 By MS/MS 3 0 1 1 62.101 61.666 3 1.2932E-12 21902 20211116_3441_TMUAki_TMT10x_S_F3 120.4 108.79 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7191 2088 6699 38869 46683 46683 1 GPAESPDEGITTTEGEGECEQTPEELEPVEK Unmodified 3343.4409 0.44093568 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS 1 0 2 2 58.253 58.253 3;4 1.6438E-35 17420 20211116_3428_TMUAki_TMT10x_P_F1 166.49 156.16 2577500 4192400 8258 5888800 4429800 6250500 3589500 2396600 2502500 2233100 3229000 2400000 3918300 129630 5893200 4226900 6258700 3651300 2626300 2619200 2187700 3092400 2 2 1 2 2 2 2 2 2 2 2 2577500 4192400 8258 5888800 4429800 6250500 3589500 2396600 2502500 2233100 3229000 2400000 3918300 129630 5893200 4226900 6258700 3651300 2626300 2619200 2187700 3092400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3043600000 3043600000 0 7192 1057 6700 38870;38871 46684;46685 46684 2 GPAHCLLLGER Unmodified 1221.6288 0.6288259 1782 Q15274 QPRT Nicotinate-nucleotide pyrophosphorylase [carboxylating] yes yes 0 0 0 0 By MS/MS 6.2 0.748 1 2 2 5 35.73 35.862 2;3 1.0167E-06 7810 20211116_3434_TMUAki_TMT10x_P_F6 125.74 92.844 1177400 1830100 29241 1993900 2265000 2283700 1431800 1109500 1170800 1098400 1436000 1096400 1708300 132290 2026900 2152100 2282200 1487900 1187000 1211900 1073200 1377000 7 7 5 7 7 7 7 7 7 7 7 1177400 1830100 29241 1993900 2265000 2283700 1431800 1109500 1170800 1098400 1436000 1096400 1708300 132290 2026900 2152100 2282200 1487900 1187000 1211900 1073200 1377000 7 7 5 7 7 7 7 7 7 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 99599000 99599000 0 7193 1782 6701 38872;38873;38874;38875;38876 46686;46687;46688;46689;46690;46691;46692;46693;46694 46688 9 GPALLPPPPQMLAPAFPPPLLLPPPTGDPR Oxidation (M) 3079.6933 0.69327065 2359 Q92733 PRCC Proline-rich protein PRCC yes yes 0 0 1 0 By MS/MS 4 0 1 1 80.876 80.884 4 0.00092334 27212 20211116_3431_TMUAki_TMT10x_P_F4 56.533 44.902 1870900 2808700 7824.4 3282100 1719000 3422000 2316900 1762600 1734000 2160800 2354500 1742100 2622600 160280 3316900 1663700 3440100 2300800 1887800 1811500 2094000 2252100 2 2 2 2 2 2 2 2 2 2 2 1870900 2808700 7824.4 3282100 1719000 3422000 2316900 1762600 1734000 2160800 2354500 1742100 2622600 160280 3316900 1663700 3440100 2300800 1887800 1811500 2094000 2252100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1124100000 1124100000 0 7194 2359 6702 38877 46695;46696 46696 2697 2 GPALLPPPPQMLAPAFPPPLLLPPPTGDPR Unmodified 3063.6984 0.69835602 2359 Q92733 PRCC Proline-rich protein PRCC yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 1 3 82.219 82.223 3;4 2.8043E-07 26756 20211116_3444_TMUAki_TMT10x_S_F5 80.847 72.95 2817000 4602800 21582 4797500 3656600 4238800 3284600 2987900 2975200 3450100 3939100 2623000 4295600 247270 4872100 3496800 4324600 3341600 3114900 3074500 3350500 3770000 5 5 2 5 5 5 5 5 5 5 5 1020300 1619800 0 1776500 1104600 1978700 1162500 1015200 1160500 1247800 1421500 949890 1512100 77183 1804300 1060000 1981600 1176100 1087800 1190000 1209000 1363200 2 2 0 2 2 2 2 2 2 2 2 1796800 2982900 21582 3020900 2551900 2260100 2122100 1972700 1814700 2202400 2517500 1673100 2783500 170090 3067800 2436800 2342900 2165500 2027100 1884500 2141500 2406800 3 3 2 3 3 3 3 3 3 3 3 768210000 155170000 613040000 7195 2359 6702 38878;38879;38880;38881 46697;46698;46699;46700;46701 46701 5 GPAVGIDLGTTYSCVGVFQHGK Unmodified 2262.1103 0.11030209 615 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 By MS/MS By MS/MS 3.85 2.71 11 4 4 2 4 4 5 19 15 66.7 66.654 2;3;4;5 1.4565E-161 20406 20211116_3436_TMUAki_TMT10x_P_F8 393.9 366.56 359610000 596580000 2436500 587430000 377980000 499520000 403940000 288760000 276450000 311520000 394410000 334810000 556640000 27444000 598610000 362960000 509560000 404430000 304910000 291000000 303310000 376820000 56 56 29 56 56 56 56 56 56 56 56 194700000 313150000 813520 310740000 174200000 319600000 203030000 150010000 140800000 161920000 203790000 181270000 292190000 13543000 317310000 167610000 321230000 202510000 161440000 148200000 157650000 194640000 23 23 12 23 23 23 23 23 23 23 23 164900000 283430000 1622900 276690000 203780000 179910000 200920000 138750000 135650000 149600000 190620000 153540000 264450000 13901000 281300000 195350000 188330000 201930000 143470000 142800000 145660000 182180000 33 33 17 33 33 33 33 33 33 33 33 163430000000 88629000000 74803000000 7196 615 6703 38882;38883;38884;38885;38886;38887;38888;38889;38890;38891;38892;38893;38894;38895;38896;38897;38898;38899;38900;38901;38902;38903;38904;38905;38906;38907;38908;38909;38910;38911;38912;38913;38914;38915 46702;46703;46704;46705;46706;46707;46708;46709;46710;46711;46712;46713;46714;46715;46716;46717;46718;46719;46720;46721;46722;46723;46724;46725;46726;46727;46728;46729;46730;46731;46732;46733;46734;46735;46736;46737;46738;46739;46740;46741;46742;46743;46744;46745;46746;46747;46748;46749;46750;46751;46752;46753;46754;46755;46756;46757;46758;46759;46760;46761 46728 60 GPCIIYNEDNGIIK Unmodified 1604.7868 0.78684269 953 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.784 4 5 4 7 6 60.131 60.19 2;3 3.2217E-37 18552 20211116_3431_TMUAki_TMT10x_P_F4 247.79 208.49 88544000 156350000 2122300 159590000 115910000 124110000 101880000 96567000 82820000 91637000 111360000 82457000 145900000 9495700 162050000 110900000 128010000 103490000 99425000 86101000 89701000 106540000 12 12 8 12 12 12 12 12 12 12 12 41064000 67737000 1078000 71949000 57047000 80505000 52228000 43627000 36929000 41056000 50630000 38242000 63222000 4542400 73230000 54637000 80657000 52755000 46141000 38725000 40203000 48417000 7 7 4 7 7 7 7 7 7 7 7 47480000 88614000 1044400 87646000 58859000 43609000 49655000 52940000 45890000 50582000 60726000 44215000 82683000 4953200 88823000 56261000 47352000 50732000 53284000 47377000 49498000 58121000 5 5 4 5 5 5 5 5 5 5 5 8463300000 5327200000 3136100000 7197 953 6704 38916;38917;38918;38919;38920;38921;38922;38923;38924;38925;38926;38927;38928 46762;46763;46764;46765;46766;46767;46768;46769;46770;46771;46772;46773;46774;46775;46776 46763 15 GPDALTLLEYTETR Unmodified 1577.7937 0.7937022 2505 Q96JB5;Q96JB5-4;Q96JB5-3;Q96JB5-2 CDK5RAP3 CDK5 regulatory subunit-associated protein 3 yes no 0 0 0 0 By MS/MS 3 0 1 1 77.002 76.892 2 4.5429E-06 27978 20211116_3441_TMUAki_TMT10x_S_F3 90.434 64.626 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7198 2505 6705 38929 46777 46777 1 GPDFTPAFADFGR Unmodified 1396.6412 0.64116473 216 O43432;O43432-4;O43432-3 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 69.773 69.708 2 0.0001034 21964 20211116_3445_TMUAki_TMT10x_S_F6 98.156 72.42 8352000 14271000 0 16973000 9198800 10964000 8523000 7380900 8211900 8334500 9929100 7775200 13327000 539430 17035000 8792600 11460000 8671000 7713800 8428800 8100700 9525100 2 2 0 2 2 2 2 2 2 2 2 4353500 6790500 0 8312900 4257700 7051900 4341400 3878500 4025400 4170700 4859300 4053200 6341900 320050 8354100 4082000 7190500 4389500 4112300 4138600 4061300 4661700 1 1 0 1 1 1 1 1 1 1 1 3998400 7480600 0 8660100 4941100 3912100 4181600 3502400 4186500 4163800 5069800 3721900 6984600 219380 8680500 4710500 4269100 4281500 3601500 4290200 4039300 4863300 1 1 0 1 1 1 1 1 1 1 1 707720000 299500000 408220000 7199 216 6706 38930;38931 46778;46779 46779 2 GPDGLTAFEATDNQAIK Unmodified 1746.8424 0.84244331 1268 P58546 MTPN Myotrophin yes yes 0 0 0 0 By MS/MS By MS/MS 3.29 1.1 1 2 5 4 2 7 7 61.181 61.052 2;3 6.2963E-108 19394 20211116_3442_TMUAki_TMT10x_S_F4 362.96 304.26 109860000 189500000 1697700 197820000 164810000 209260000 146750000 170120000 177880000 150630000 160980000 102300000 176850000 10979000 201390000 157650000 211600000 150760000 174360000 179000000 147920000 155820000 18 18 13 18 18 18 18 18 18 18 18 67758000 113270000 1033200 120490000 120310000 163450000 98339000 103890000 115520000 93176000 96250000 63094000 105720000 6900700 123050000 114840000 162530000 101430000 108310000 116090000 91442000 93445000 10 10 6 10 10 10 10 10 10 10 10 42101000 76224000 664510 77333000 44507000 45809000 48410000 66236000 62359000 57454000 64733000 39204000 71129000 4078400 78342000 42810000 49070000 49332000 66051000 62913000 56474000 62372000 8 8 7 8 8 8 8 8 8 8 8 19413000000 11583000000 7829800000 7200 1268 6707 38932;38933;38934;38935;38936;38937;38938;38939;38940;38941;38942;38943;38944;38945 46780;46781;46782;46783;46784;46785;46786;46787;46788;46789;46790;46791;46792;46793;46794;46795;46796;46797;46798;46799;46800 46798 21 GPDWSIPILDFVEQK Unmodified 1742.8879 0.88793694 2469 Q96G28;Q96G28-2 CFAP36 Cilia- and flagella-associated protein 36 yes no 0 0 0 0 By MS/MS 6 0 1 1 81.962 81.954 3 0.0089248 26525 20211116_3434_TMUAki_TMT10x_P_F6 57.788 41.903 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7201 2469 6708 38946 46801 46801 1 GPFELEAFYSDPQGVPYPEAK Unmodified 2340.095 0.095029182 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 0 By MS/MS By MS/MS 4.29 1.03 2 2 2 1 4 3 78.614 78.59 3 3.7877E-10 26394 20211116_3433_TMUAki_TMT10x_P_F5 104.61 94.821 14141000 24298000 206610 20907000 15729000 20529000 16645000 14173000 13929000 15574000 17548000 13167000 22660000 1090500 21562000 15114000 20794000 16752000 14773000 14418000 15153000 16816000 5 5 2 5 5 5 5 5 5 5 5 7736700 12906000 68058 11083000 6865200 12936000 7885400 7826800 7496000 8374400 8918700 7203800 12036000 404080 11463000 6609700 12949000 7933100 8232000 7693500 8156300 8559500 3 3 1 3 3 3 3 3 3 3 3 6404000 11391000 138550 9823600 8864000 7593200 8759700 6346300 6433400 7200100 8629500 5963700 10623000 686440 10099000 8504400 7845000 8818700 6541000 6724600 6996800 8256600 2 2 1 2 2 2 2 2 2 2 2 3314800000 2014400000 1300400000 7202 2345 6709 38947;38948;38949;38950;38951;38952;38953 46802;46803;46804;46805;46806 46803 5 GPFLVSAPLSTIINWER Unmodified 1899.0254 0.025433475 1735;1571 Q14839;Q14839-2;Q12873;Q12873-3;Q12873-2 CHD4;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3 no no 0 0 0 0 By MS/MS By matching 4 0 2 1 1 80.817 80.813 3 0.0054461 27054 20211116_3431_TMUAki_TMT10x_P_F4 55.912 33.379 1512700 1979900 21543 2308000 1200700 1988900 1853800 623510 809190 825300 1365600 1408600 1848600 141120 2326600 1169000 2015100 1813900 708890 888670 797720 1300100 1 1 1 1 1 1 1 1 1 1 1 1512700 1979900 21543 2308000 1200700 1988900 1853800 623510 809190 825300 1365600 1408600 1848600 141120 2326600 1169000 2015100 1813900 708890 888670 797720 1300100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 872480000 433210000 439270000 7203 1735;1571 6710 38954;38955 46807 46807 1 GPFPQELVR Unmodified 1041.5607 0.56072956 727 P19022;P19022-2 CDH2 Cadherin-2 yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 49.962 50.137 2 0.098126 13906 20211116_3445_TMUAki_TMT10x_S_F6 45.74 16.874 17636000 27410000 0 33327000 24448000 18951000 17018000 15953000 13991000 13596000 21514000 16419000 25599000 1390800 33366000 23245000 20125000 17557000 16300000 14633000 13375000 20521000 3 3 0 3 3 3 3 3 3 3 3 6223900 9563200 0 12014000 13961000 11052000 7610900 5334500 4966200 4522800 7637100 5794800 8932600 595260 12068000 13225000 11190000 7970200 5687900 5262800 4450600 7284600 1 1 0 1 1 1 1 1 1 1 1 11412000 17847000 0 21314000 10488000 7899200 9407600 10618000 9025100 9072800 13877000 10625000 16666000 795560 21298000 10020000 8935700 9587200 10612000 9370400 8924600 13236000 2 2 0 2 2 2 2 2 2 2 2 563770000 180440000 383320000 7204 727 6711 38956;38957;38958 46808 46808 1 GPFSEISAFK Unmodified 1081.5444 0.5444108 1160 P51610;P51610-2;P51610-4 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 0 0 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 67.068 67.309 2 8.1173E-11 22880 20211116_3446_TMUAki_TMT10x_S_F7 203.35 165.79 34867000 56930000 145420 56875000 41739000 51668000 39131000 41600000 37313000 40169000 44585000 32465000 53121000 3044000 57948000 39959000 52730000 39772000 42761000 38297000 39290000 42785000 6 6 3 6 6 6 6 6 6 6 6 16436000 24973000 132860 25359000 19152000 31545000 19067000 18347000 16910000 17809000 20176000 15304000 23304000 1521300 25936000 18370000 31458000 19278000 19304000 17413000 17415000 19362000 3 3 2 3 3 3 3 3 3 3 3 18431000 31957000 12560 31516000 22587000 20122000 20064000 23253000 20404000 22359000 24409000 17160000 29817000 1522700 32012000 21589000 21272000 20494000 23457000 20884000 21874000 23423000 3 3 1 3 3 3 3 3 3 3 3 3155600000 1739800000 1415800000 7205 1160 6712 38959;38960;38961;38962;38963;38964 46809;46810;46811;46812;46813;46814;46815;46816 46815 8 GPGAGEGPGGAFAR Unmodified 1199.5683 0.56833414 26 Q9NQA3;C4AMC7;Q6VEQ5 WASH6P;WASH3P;WASH2P WAS protein family homolog 6;Putative WAS protein family homolog 3;WAS protein family homolog 2 yes no 0 0 0 0 By MS/MS 4 0 1 1 34.619 34.644 2 0.00060321 8230 20211116_3431_TMUAki_TMT10x_P_F4 76.682 53.125 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7206 26 6713 38965 46817 46817 1 GPGASGEQPEPGEAAAGGAAEEAR Unmodified 2164.9621 0.96211753 2801 Q9H3P7 ACBD3 Golgi resident protein GCP60 yes yes 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 33.54 33.47 3 1.3721E-29 9327 20211116_3439_TMUAki_TMT10x_S_F1 172.75 163.58 300450 528250 5936 771260 941860 767330 523600 560600 850070 411020 658820 279750 493820 34768 769590 892640 777300 563080 575940 843720 407580 641460 3 3 1 3 3 3 3 3 3 3 3 204930 351980 5936 514270 869490 703280 441270 351530 537490 251270 435980 190830 329040 28502 516000 823080 696900 472970 372160 538990 249530 423720 2 2 1 2 2 2 2 2 2 2 2 95519 176270 0 256990 72369 64045 82324 209070 312570 159750 222840 88927 164780 6265.8 253580 69555 80405 90112 203780 304730 158050 217740 1 1 0 1 1 1 1 1 1 1 1 141650000 99973000 41675000 7207 2801 6714 38966;38967;38968 46818;46819;46820 46820 3 GPGLSQAFVGQK Unmodified 1187.6299 0.62987176 1703 Q14315;Q14315-2 FLNC Filamin-C yes no 0 0 0 0 By MS/MS 1 0 1 1 50.235 49.973 2 0.00081796 16066 20211116_3439_TMUAki_TMT10x_S_F1 83.081 52.008 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7208 1703 6715 38969 46821 46821 1 GPGPLQER Unmodified 852.44537 0.44536545 1026 P43243 MATR3 Matrin-3 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 1 1 1 1 3 1 30.394 30.282 2 0.0016326 7625 20211116_3429_TMUAki_TMT10x_P_F2 119.41 67.004 2643400 4395200 5129.7 4039300 3630700 3891100 3309000 2264200 2679600 2349700 3387500 2461200 4099900 224820 4143600 3472700 3936500 3353800 2386700 2778700 2291300 3245900 4 4 2 4 4 4 4 4 4 4 4 1474500 2479400 5129.7 2266200 2433800 2889400 1842400 1310100 1584600 1369400 1975200 1372900 2312700 139360 2336300 2319000 2869600 1891700 1413500 1637200 1335000 1893400 3 3 2 3 3 3 3 3 3 3 3 1168900 1915800 0 1773100 1196900 1001600 1466600 954070 1095000 980280 1412300 1088300 1787100 85463 1807400 1153700 1066900 1462000 973220 1141500 956310 1352500 1 1 0 1 1 1 1 1 1 1 1 244130000 107290000 136850000 7209 1026 6716 38970;38971;38972;38973 46822;46823;46824;46825 46823 4 GPHLANSILFQSSGLTNGIIEEK Unmodified 2424.2649 0.26488848 2698 Q9BVP2;Q9BVP2-2 GNL3 Guanine nucleotide-binding protein-like 3 yes no 0 0 0 0 By MS/MS 7 0 1 1 70.859 71.255 3 0.0018444 24086 20211116_3435_TMUAki_TMT10x_P_F7 60.036 45.108 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7210 2698 6717 38974 46826 46826 1 GPHLVQSDGTVPFWAHAGNAIPSSDQIR Unmodified 2956.458 0.45800241 1090 P49257 LMAN1 Protein ERGIC-53 yes yes 0 0 0 0 By MS/MS 7 0 1 1 57.941 58.464 4 0.058878 19288 20211116_3446_TMUAki_TMT10x_S_F7 34.558 26.937 2891500 5624300 28917 6007100 2721000 2280900 2271300 3156900 3732900 3445900 3867500 2692500 5249500 264290 6045400 2599400 2573200 2372600 3174200 3738400 3353500 3726600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2891500 5624300 28917 6007100 2721000 2280900 2271300 3156900 3732900 3445900 3867500 2692500 5249500 264290 6045400 2599400 2573200 2372600 3174200 3738400 3353500 3726600 1 1 1 1 1 1 1 1 1 1 1 639390000 0 639390000 7211 1090 6718 38975 46827 46827 1 GPHPDFPDDFSRPDDFHPDKR Unmodified 2493.1098 0.10978482 2750 Q9C0J8 WDR33 pre-mRNA 3' end processing protein WDR33 yes yes 0 0 0 2 By MS/MS 6 0 1 1 43.059 43.112 6 0.010736 10669 20211116_3434_TMUAki_TMT10x_P_F6 46.353 39.554 692160 1231200 14562 1260600 1528900 2024500 1150400 1331200 1064400 1012200 1124000 644580 1149000 82676 1295400 1457400 1999700 1184000 1378900 1088800 1001700 1082500 1 1 1 1 1 1 1 1 1 1 1 692160 1231200 14562 1260600 1528900 2024500 1150400 1331200 1064400 1012200 1124000 644580 1149000 82676 1295400 1457400 1999700 1184000 1378900 1088800 1001700 1082500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 219210000 219210000 0 7212 2750 6719 38976 46828 46828 1 GPHPPGGLLGHGPQEMR Oxidation (M) 1751.8526 0.85257126 2750 Q9C0J8 WDR33 pre-mRNA 3' end processing protein WDR33 yes yes 0 0 1 0 By MS/MS 4.5 0.5 1 1 2 31.265 31.25 4 0.013185 7225 20211116_3433_TMUAki_TMT10x_P_F5 46.21 40.304 715750 1028100 9988.9 1130800 1359600 1369600 771980 686280 796180 714540 903660 666510 959720 77668 1149900 1289500 1365100 814520 733090 812730 696690 868400 2 2 2 2 2 2 2 2 2 2 2 715750 1028100 9988.9 1130800 1359600 1369600 771980 686280 796180 714540 903660 666510 959720 77668 1149900 1289500 1365100 814520 733090 812730 696690 868400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 107870000 107870000 0 7213 2750 6720 38977;38978 46829 46829 2933 1 GPIKFNVWDTAGQEK Unmodified 1688.8522 0.85222014 1368 P62826 RAN GTP-binding nuclear protein Ran yes yes 0 0 0 1 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 59.818 59.781 3 1.0088E-14 18038 20211116_3436_TMUAki_TMT10x_P_F8 156.57 119.42 11799000 27000000 199070 13958000 35393000 55954000 35310000 43275000 32763000 41851000 33151000 10988000 25145000 1494200 15788000 33947000 54127000 35742000 44596000 33456000 40933000 31967000 3 3 3 3 3 3 3 3 3 3 3 4780300 12174000 2993.7 4497200 21995000 41268000 26852000 23016000 16689000 22512000 16042000 4451000 11331000 640210 5679900 21212000 39363000 26669000 24307000 17400000 22007000 15495000 1 1 1 1 1 1 1 1 1 1 1 7018800 14826000 196080 9460500 13398000 14686000 8457600 20259000 16074000 19340000 17109000 6536600 13814000 853990 10108000 12734000 14764000 9073000 20289000 16056000 18926000 16472000 2 2 2 2 2 2 2 2 2 2 2 2662100000 1347300000 1314800000 7214 1368 6721 38979;38980;38981 46830;46831;46832 46830 3 GPILSFASTR Unmodified 1047.5713 0.57129425 990 P40937;P40937-2 RFC5 Replication factor C subunit 5 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 54.18 53.799 2 6.5397E-09 17195 20211116_3429_TMUAki_TMT10x_P_F2 147.24 91.368 2862800 4983200 0 5271000 3041600 2657600 2555600 4244800 3798700 3600400 4112200 2665400 4651000 222920 5317900 2903200 2904300 2656200 4216400 3821300 3542900 3957200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2862800 4983200 0 5271000 3041600 2657600 2555600 4244800 3798700 3600400 4112200 2665400 4651000 222920 5317900 2903200 2904300 2656200 4216400 3821300 3542900 3957200 1 1 0 1 1 1 1 1 1 1 1 163770000 0 163770000 7215 990 6722 38982;38983;38984 46833;46834;46835 46833 3 GPISDALAHHLR Unmodified 1285.6891 0.68911797 2792 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.816 1 1 1 2 1 37.522 37.814 4 0.00010959 10441 20211116_3435_TMUAki_TMT10x_P_F7 94.465 78.263 212470 275430 4538.6 310980 282340 290750 220650 207230 209120 209050 272380 197860 257130 22238 314430 269410 295560 226680 214970 215490 204100 260800 2 2 1 2 2 2 2 2 2 2 2 109690 120450 0 139110 181440 198290 109570 101470 104470 100590 123200 102130 112460 9512.9 141480 172130 196180 114740 108030 107170 98275 118270 1 1 0 1 1 1 1 1 1 1 1 102780 154980 4538.6 171870 100900 92454 111080 105760 104650 108460 149180 95732 144680 12725 172950 97279 99383 111940 106940 108330 105820 142530 1 1 1 1 1 1 1 1 1 1 1 69077000 53966000 15111000 7216 2792 6723 38985;38986;38987 46836;46837 46836 2 GPKGPEEK Unmodified 840.43413 0.43413207 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 1 By MS/MS 4 0 1 1 28.685 28.729 3 0.10191 5853 20211116_3431_TMUAki_TMT10x_P_F4 36.585 17.84 321290 523940 1403.8 389540 399160 616360 345010 283750 298650 287820 383660 299160 488390 29036 410280 381450 606440 351350 305410 308870 280940 367470 1 1 1 1 1 1 1 1 1 1 1 321290 523940 1403.8 389540 399160 616360 345010 283750 298650 287820 383660 299160 488390 29036 410280 381450 606440 351350 305410 308870 280940 367470 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8317500 8317500 0 7217 1474 6724 38988 46838 46838 1 GPLATGGIKK Unmodified 940.57057 0.57056597 3247 Q9Y2S6 TMA7 Translation machinery-associated protein 7 yes yes 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 38.055 37.914 3 5.16E-05 10795 20211116_3429_TMUAki_TMT10x_P_F2 93.258 49.95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7218 3247 6725 38989;38990;38991 46839;46840;46841 46839 3 GPLIPPLLSLPPPPWGR Unmodified 1806.0556 0.055611391 1436 P79522;P79522-2 PRR3 Proline-rich protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 81.304 81.331 3 5.9223E-11 28801 20211116_3446_TMUAki_TMT10x_S_F7 126.48 107.65 3916300 6128200 161820 6853700 3729100 4940500 4826300 2009500 1917700 2458400 3899500 3647700 5720900 472870 6912100 3613000 5085200 4748100 2204400 2148600 2382600 3700400 3 3 3 3 3 3 3 3 3 3 3 2877400 4478600 143540 5024900 2530600 3985100 3455000 1515400 1266800 1705200 2715700 2680200 4181100 367470 5072000 2458400 4068400 3388500 1671000 1435900 1657600 2574900 2 2 2 2 2 2 2 2 2 2 2 1038900 1649500 18275 1828900 1198500 955360 1371300 494100 650900 753220 1183800 967500 1539900 105400 1840000 1154600 1016800 1359700 533400 712620 724960 1125500 1 1 1 1 1 1 1 1 1 1 1 922320000 380940000 541390000 7219 1436 6726 38992;38993;38994 46842;46843;46844;46845 46845 4 GPLLEEQALTK Unmodified 1197.6605 0.66050319 1901 Q52LJ0;Q52LJ0-1 FAM98B Protein FAM98B yes no 0 0 0 0 By MS/MS 4 0 1 1 55.6 55.751 2 0.0044861 16728 20211116_3431_TMUAki_TMT10x_P_F4 71.524 50.623 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7220 1901 6727 38995 46846 46846 1 GPLLYCARPPQDLK Unmodified 1626.8552 0.85519702 2188 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 3 3 3 3 50.923 50.757 3;4 8.6115E-16 14317 20211116_3428_TMUAki_TMT10x_P_F1 145.29 115.6 23617000 39447000 331630 42033000 31125000 33731000 23238000 34941000 32682000 31538000 33561000 21992000 36818000 2371100 42574000 29666000 34902000 24276000 35363000 32866000 30942000 32348000 8 8 7 8 8 8 8 8 8 8 8 8475400 13342000 95114 14200000 15778000 20113000 10990000 12091000 11533000 11000000 11031000 7892100 12452000 893590 14514000 15014000 19945000 11415000 12666000 11691000 10789000 10656000 2 2 2 2 2 2 2 2 2 2 2 15141000 26105000 236520 27833000 15347000 13617000 12249000 22850000 21149000 20538000 22530000 14100000 24366000 1477500 28060000 14652000 14957000 12862000 22697000 21175000 20154000 21691000 6 6 5 6 6 6 6 6 6 6 6 1613100000 781090000 832020000 7221 2188 6728 38996;38997;38998;38999;39000;39001 46847;46848;46849;46850;46851;46852;46853;46854;46855 46847 9 GPLPAAPPVAPER Unmodified 1270.7034 0.70337105 2903 Q9NQC3;Q9NQC3-2;Q9NQC3-5 RTN4 Reticulon-4 yes no 0 0 0 0 By MS/MS By MS/MS 5.11 0.737 2 4 3 4 5 44.518 44.664 2;3 4.924E-24 11297 20211116_3434_TMUAki_TMT10x_P_F6 192.64 155.88 12864000 20425000 119800 23760000 22270000 21528000 13875000 16065000 17435000 15064000 18364000 11978000 19071000 1248300 23970000 21146000 21946000 14623000 16579000 17615000 14754000 17686000 9 9 5 9 9 9 9 9 9 9 9 7425200 11494000 65581 13360000 17691000 16734000 9380200 8902500 9626700 8244300 10198000 6914000 10732000 808780 13548000 16758000 16664000 9956900 9427000 9803000 8078900 9819600 5 5 3 5 5 5 5 5 5 5 5 5438900 8930700 54217 10400000 4578900 4793500 4495100 7162500 7808700 6820000 8166100 5064200 8338800 439520 10422000 4388400 5282400 4666600 7152500 7811700 6674800 7866500 4 4 2 4 4 4 4 4 4 4 4 1374300000 647360000 726930000 7222 2903 6729 39002;39003;39004;39005;39006;39007;39008;39009;39010 46856;46857;46858;46859;46860;46861;46862;46863;46864;46865;46866 46861 11 GPLPLSSQHRGDADQASNILASFGLSAR Unmodified 2864.4529 0.45291703 1026 P43243 MATR3 Matrin-3 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0 2 1 1 70.151 69.796 4 1.2891E-42 25191 20211116_3441_TMUAki_TMT10x_S_F3 196.14 172.81 5076900 7263600 102440 8645400 5416800 7523300 5417400 4562800 4840400 5034700 5459400 4727900 6782900 521150 8705400 5200100 7666900 5477200 4802700 4971500 4897700 5247300 2 2 2 2 2 2 2 2 2 2 2 3158500 4163800 17359 4799800 2716400 5591600 3225200 2797100 2649300 2919800 3193800 2941000 3887600 271850 4863500 2618400 5584700 3227000 2988600 2739700 2846600 3064100 1 1 1 1 1 1 1 1 1 1 1 1918500 3099800 85085 3845600 2700400 1931700 2192300 1765700 2191100 2114900 2265600 1786900 2895200 249300 3841900 2581600 2082200 2250200 1814100 2231800 2051100 2183200 1 1 1 1 1 1 1 1 1 1 1 3359200000 1563900000 1795300000 7223 1026 6730 39011;39012 46867;46868 46868 2 GPLPPLRPLSSTGYRPSPR Unmodified 2047.1327 0.13269251 1967 Q69YN4 KIAA1429 Protein virilizer homolog yes yes 0 0 0 2 By MS/MS 6 0 1 1 42.712 42.878 4 0.073598 10918 20211116_3445_TMUAki_TMT10x_S_F6 38.756 25.989 1260600 2097300 0 2264600 1115700 1026100 1171400 1936000 1928600 1645500 1811100 1173800 1957600 102180 2280000 1071200 1142200 1208800 1913800 1924700 1619000 1750800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1260600 2097300 0 2264600 1115700 1026100 1171400 1936000 1928600 1645500 1811100 1173800 1957600 102180 2280000 1071200 1142200 1208800 1913800 1924700 1619000 1750800 1 1 0 1 1 1 1 1 1 1 1 181500000 0 181500000 7224 1967 6731 39013 46869 46869 1 GPLPVKR Unmodified 765.48611 0.48610806 969 P38159;P38159-2;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 yes no 0 0 0 1 By MS/MS 1 0 1 1 31.639 31.688 3 0.048541 8592 20211116_3439_TMUAki_TMT10x_S_F1 54.056 24.746 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7225 969 6732 39014 46870 46870 1 GPLQSVQVFGR Unmodified 1186.6459 0.64585618 1340 P62249 RPS16 40S ribosomal protein S16 yes yes 0 0 0 0 By MS/MS By MS/MS 3.89 2.77 2 2 2 1 2 5 4 55.575 55.417 2 1.7722E-18 16385 20211116_3440_TMUAki_TMT10x_S_F2 218.94 194.99 49442000 80456000 597790 87356000 57875000 65639000 48564000 55215000 51134000 51651000 64023000 46037000 75100000 4517000 88305000 55279000 67974000 49827000 56559000 52365000 50592000 61362000 11 11 6 11 11 11 11 11 11 11 11 20268000 32181000 16516 34895000 29915000 41193000 25063000 21323000 20733000 20257000 25360000 18871000 30038000 1722000 35501000 28556000 41129000 25543000 22651000 21446000 19828000 24321000 4 4 1 4 4 4 4 4 4 4 4 29174000 48275000 581280 52461000 27960000 24447000 23500000 33892000 30401000 31394000 38663000 27167000 45062000 2795000 52804000 26723000 26845000 24284000 33908000 30919000 30764000 37041000 7 7 5 7 7 7 7 7 7 7 7 18821000000 9793400000 9027400000 7226 1340 6733 39015;39016;39017;39018;39019;39020;39021;39022;39023 46871;46872;46873;46874;46875;46876;46877;46878;46879;46880;46881;46882 46878 12 GPLREPCALTLAQR Unmodified 1580.8457 0.84569497 1490 Q01968;Q01968-2 OCRL Inositol polyphosphate 5-phosphatase OCRL-1 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 43.162 43.063 3 8.8513E-14 11220 20211116_3428_TMUAki_TMT10x_P_F1 144.29 116.43 4126200 6787500 28752 7510000 6606300 6898800 5212700 5310800 5402000 4660500 5928000 3842100 6336100 397940 7601300 6300700 7030000 5366200 5460300 5506000 4578400 5702200 4 4 3 4 4 4 4 4 4 4 4 2489200 4164900 3880 4557700 5116900 5679400 3854300 3549100 3483100 3002100 3627100 2317700 3887800 241110 4638700 4874400 5668700 3964100 3699600 3564800 2954500 3494500 2 2 1 2 2 2 2 2 2 2 2 1636900 2622500 24872 2952300 1489400 1219400 1358400 1761700 1918900 1658400 2300900 1524300 2448300 156830 2962600 1426300 1361300 1402100 1760700 1941200 1623900 2207800 2 2 2 2 2 2 2 2 2 2 2 255180000 199090000 56096000 7227 1490 6734 39024;39025 46883;46884;46885;46886 46884 4 GPLTVEETPR Unmodified 1097.5717 0.57168818 1720 Q14676;Q14676-2;Q14676-3;Q14676-4 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 37.183 37.104 2 0.0001853 11984 20211116_3441_TMUAki_TMT10x_S_F3 118.67 94.901 1111400 2026400 5426.7 2164000 1204600 1033400 1135900 1996200 2164900 1659900 2062700 1034800 1891300 91199 2181000 1153200 1144200 1187600 1970900 2153800 1635000 1993000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1111400 2026400 5426.7 2164000 1204600 1033400 1135900 1996200 2164900 1659900 2062700 1034800 1891300 91199 2181000 1153200 1144200 1187600 1970900 2153800 1635000 1993000 2 2 1 2 2 2 2 2 2 2 2 65863000 0 65863000 7228 1720 6735 39026;39027 46887;46888 46888 2 GPLVFGEPIAASLGTDGTHYWSK Unmodified 2402.1907 0.1906609 1691 Q14194-2;Q14194 CRMP1 Dihydropyrimidinase-related protein 1 yes no 0 0 0 0 By matching By MS/MS 8 0 2 1 1 77.549 77.527 3 5.2443E-05 24795 20211116_3447_TMUAki_TMT10x_S_F8 64.295 47.216 4151300 7030700 93584 8198100 5749700 4584100 5276100 3070700 2812200 3384800 4673100 3865900 6564700 453770 8226900 5506800 4858900 5300300 3207900 3034800 3292900 4450400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4151300 7030700 93584 8198100 5749700 4584100 5276100 3070700 2812200 3384800 4673100 3865900 6564700 453770 8226900 5506800 4858900 5300300 3207900 3034800 3292900 4450400 1 1 1 1 1 1 1 1 1 1 1 866120000 519900000 346220000 7229 1691 6736 39028;39029 46889 46889 1 GPLVNASLR Unmodified 925.53451 0.53451481 128 O14744;O14744-5;O14744-2;O14744-3;O14744-4 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed yes no 0 0 0 0 By MS/MS 5.33 3.09 1 1 1 3 39.668 39.92 2 3.3628E-05 9519 20211116_3447_TMUAki_TMT10x_S_F8 123.16 75.041 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7230 128 6737 39030;39031;39032 46890;46891;46892 46892 3 GPPAPAPEVEELAR Unmodified 1431.7358 0.73579339 1080 P48681 NES Nestin yes yes 0 0 0 0 By MS/MS 2 0 1 1 49.296 49.023 2 1.6286E-13 15201 20211116_3429_TMUAki_TMT10x_P_F2 130.1 98.725 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7231 1080 6738 39033 46893 46893 1 GPPAPAPEVEELARR Unmodified 1587.8369 0.83690442 1080 P48681 NES Nestin yes yes 0 0 0 1 By MS/MS 3 0 1 1 43.109 42.783 3 0.034601 14176 20211116_3441_TMUAki_TMT10x_S_F3 45.188 21.584 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7232 1080 6739 39034 46894 46894 1 GPPAPSSSLPIRQEPSSFR Unmodified 2009.033 0.033038048 3315 Q9Y5B0;Q9Y5B0-4 CTDP1 RNA polymerase II subunit A C-terminal domain phosphatase yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 42.37 42.5 3 1.4192E-58 11025 20211116_3436_TMUAki_TMT10x_P_F8 253.34 230.49 766690 1342500 3287.9 1498000 1190100 1357100 813170 1307700 1310100 1046900 1225000 713800 1253300 61634 1515100 1131100 1390100 859930 1324200 1308100 1033200 1184300 2 2 1 2 2 2 2 2 2 2 2 393540 712090 3287.9 774670 860540 1110800 604940 703940 681710 538060 640100 366450 664690 42232 790900 818900 1101700 629360 731280 688690 532340 618770 1 1 1 1 1 1 1 1 1 1 1 373140 630430 0 723320 329540 246280 208230 603730 628400 508860 584890 347350 588600 19401 724210 312220 288350 230570 592960 619360 500890 565570 1 1 0 1 1 1 1 1 1 1 1 223420000 132510000 90915000 7233 3315 6740 39035;39036 46895;46896 46895 2 GPPDFSSDEEREPTPVLGSGAAAAGR Unmodified 2569.2045 0.20447307 1006;1007 P42166;P42167;P42167-2;P42167-3 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 0 1 By MS/MS By MS/MS 3.19 1.29 2 3 4 4 3 9 7 48.409 48.374 3;4 6.1426E-158 16359 20211116_3441_TMUAki_TMT10x_S_F3 380.92 369.3 46872000 79611000 221750 88303000 72375000 95659000 56131000 85206000 87517000 76316000 75502000 43640000 74318000 3424700 89580000 68971000 96763000 58757000 86893000 87234000 74901000 73206000 20 20 7 20 20 20 20 20 20 20 20 27219000 44385000 183420 49231000 55331000 79256000 44678000 44577000 47535000 40454000 40815000 25343000 41434000 2006500 50331000 52781000 78109000 45964000 46950000 47996000 39679000 39581000 12 12 5 12 12 12 12 12 12 12 12 19653000 35226000 38329 39072000 17044000 16404000 11454000 40629000 39981000 35863000 34687000 18297000 32884000 1418200 39249000 16190000 18654000 12793000 39944000 39238000 35222000 33625000 8 8 2 8 8 8 8 8 8 8 8 32075000000 21188000000 10887000000 7234 1006;1007 6741 39037;39038;39039;39040;39041;39042;39043;39044;39045;39046;39047;39048;39049;39050;39051;39052 46897;46898;46899;46900;46901;46902;46903;46904;46905;46906;46907;46908;46909;46910;46911;46912;46913;46914;46915;46916 46912 20 GPPIEDAIASSDVLETASK Unmodified 1898.9473 0.94730231 3291 Q9Y450;Q9Y450-4 HBS1L HBS1-like protein yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 72.833 72.52 3 3.136E-07 25304 20211116_3430_TMUAki_TMT10x_P_F3 94.845 76.928 3736200 5716200 0 4584300 4913300 3219800 3446100 4769600 5981700 5958100 5234500 3478600 5329600 315010 4736300 4673500 3399100 3650700 4806800 5947900 5770000 5072700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3736200 5716200 0 4584300 4913300 3219800 3446100 4769600 5981700 5958100 5234500 3478600 5329600 315010 4736300 4673500 3399100 3650700 4806800 5947900 5770000 5072700 1 1 0 1 1 1 1 1 1 1 1 228590000 0 228590000 7235 3291 6742 39053;39054 46917;46918 46917 2 GPPPHELR Unmodified 901.477 0.47699993 907 P33240;P33240-2 CSTF2 Cleavage stimulation factor subunit 2 yes no 0 0 0 0 By MS/MS 3 0 1 1 26.279 25.986 3 0.015777 7494 20211116_3441_TMUAki_TMT10x_S_F3 60.436 17.838 270170 446830 10517 327290 307690 573410 435110 480420 332450 267850 315470 251630 416490 32726 346010 298870 566880 431510 486790 342100 270350 304850 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 270170 446830 10517 327290 307690 573410 435110 480420 332450 267850 315470 251630 416490 32726 346010 298870 566880 431510 486790 342100 270350 304850 2 2 2 2 2 2 2 2 2 2 2 4816000 0 4816000 7236 907 6743 39055 46919;46920 46919 2 GPPPPPGDENREMDDPSVGPK Oxidation (M) 2202.9852 0.98516116 1633 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 1 1 By MS/MS 3 0 1 1 35.258 35.018 4 0.032942 11060 20211116_3441_TMUAki_TMT10x_S_F3 40.81 32.451 344690 531380 0 514250 342610 383810 272170 597200 721200 498550 548470 320900 495770 23529 523880 326420 403840 293660 593470 707910 490980 534430 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 344690 531380 0 514250 342610 383810 272170 597200 721200 498550 548470 320900 495770 23529 523880 326420 403840 293660 593470 707910 490980 534430 1 1 0 1 1 1 1 1 1 1 1 51838000 0 51838000 7237 1633 6744 39056 46921 46921 2185 1 GPPPPPR Unmodified 716.39696 0.3969587 969;132;2045 P38159;P38159-2;O14776;O14776-2;Q75N03;Q75N03-2 RBMX;TCERG1;CBLL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;Transcription elongation regulator 1;E3 ubiquitin-protein ligase Hakai no no 0 0 0 0 By MS/MS 5 0 1 1 27.06 26.985 2 0.01237 5527 20211116_3433_TMUAki_TMT10x_P_F5 96.119 20.991 358030 570580 3564.9 508600 374860 544120 360190 251310 278500 280300 404230 333390 532180 33241 523770 359280 545540 363600 271160 291360 272560 386060 1 1 1 1 1 1 1 1 1 1 1 358030 570580 3564.9 508600 374860 544120 360190 251310 278500 280300 404230 333390 532180 33241 523770 359280 545540 363600 271160 291360 272560 386060 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8949100 8949100 0 7238 969;132;2045 6745 39057 46922 46922 1 GPPPPPTASEPTRR Unmodified 1458.7579 0.75792582 132 O14776;O14776-2 TCERG1 Transcription elongation regulator 1 yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 28.256 28.245 3 2.3305E-29 6015 20211116_3433_TMUAki_TMT10x_P_F5 200.05 130.17 484580 780730 6672.4 843190 945220 953840 561190 519610 574450 473380 630820 451240 728740 52845 857440 897080 955120 589730 548830 585820 464230 606780 3 3 3 3 3 3 3 3 3 3 3 484580 780730 6672.4 843190 945220 953840 561190 519610 574450 473380 630820 451240 728740 52845 857440 897080 955120 589730 548830 585820 464230 606780 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57312000 57312000 0 7239 132 6746 39058;39059 46923;46924;46925 46924 3 GPPPSYGGSSR Unmodified 1060.4938 0.49377221 969 P38159;P38159-2;Q96E39 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 28.248 28.237 2 1.2591E-18 6013 20211116_3433_TMUAki_TMT10x_P_F5 224.51 202.98 298310 501950 920.53 390140 359170 519860 316270 232360 269630 275020 333360 277750 467950 25962 407840 343340 515140 321610 252040 278610 266840 319610 2 2 1 2 2 2 2 2 2 2 2 298310 501950 920.53 390140 359170 519860 316270 232360 269630 275020 333360 277750 467950 25962 407840 343340 515140 321610 252040 278610 266840 319610 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18771000 18771000 0 7240 969 6747 39060;39061 46926;46927 46927 2 GPPPTDPYGRPPPYDR Unmodified 1780.8533 0.85328277 1856 Q16630;Q16630-2;Q16630-3 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.862 35.92 3 2.2907E-10 9152 20211116_3433_TMUAki_TMT10x_P_F5 121.79 100.83 2820800 4418800 23929 5333500 8104000 7737000 3977000 5025700 5475400 4131200 4609400 2626600 4126600 327650 5412400 7668000 7672700 4296200 5219900 5474000 4071600 4473400 4 4 3 4 4 4 4 4 4 4 4 2548000 3967300 16770 4735600 7920700 7536100 3779000 4508500 4920000 3728800 4115200 2372600 3704800 299620 4818700 7491400 7436500 4085000 4713400 4926800 3673900 3994700 3 3 2 3 3 3 3 3 3 3 3 272750 451470 7158.3 597890 183300 200830 198010 517230 555400 402390 494210 254010 421820 28032 593670 176560 236200 211140 506480 547220 397720 478640 1 1 1 1 1 1 1 1 1 1 1 339580000 271960000 67624000 7241 1856 6748 39062;39063;39064 46928;46929;46930;46931 46930 4 GPPPTDPYGRPPPYDRGDYGPPGR Unmodified 2580.2146 0.21458424 1856 Q16630;Q16630-2;Q16630-3 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes no 0 0 0 2 By MS/MS By MS/MS 5.5 0.5 2 2 3 1 38.348 38.383 4 2.1585E-29 10214 20211116_3433_TMUAki_TMT10x_P_F5 174.7 157.78 2600300 4598500 23317 5614700 5528400 6833100 3758500 4741300 4500100 3762100 4150300 2421200 4294700 233660 5674300 5256700 6838900 3927900 4896900 4533200 3714600 4014400 7 7 3 7 7 7 7 7 7 7 7 2221300 3931000 9286.7 4694400 5176500 6437700 3474400 4087800 3758700 3150300 3494300 2068200 3670900 189540 4761200 4920000 6398000 3622100 4246800 3802000 3115400 3379000 6 6 2 6 6 6 6 6 6 6 6 378970 667550 14030 920310 351940 395340 284080 653480 741360 611720 655950 352960 623840 44116 913160 336600 440930 305860 650140 731170 599160 635420 1 1 1 1 1 1 1 1 1 1 1 791510000 615560000 175950000 7242 1856 6749 39065;39066;39067;39068 46932;46933;46934;46935;46936;46937 46933 6 GPPQEEEEEEDEEEEATKEDAEAPGIR Unmodified 3041.2745 0.27452228 1165 P51858;P51858-3;P51858-2 HDGF Hepatoma-derived growth factor yes no 0 0 0 1 By MS/MS By MS/MS 1 0 3 2 1 47.492 47.412 3;4 5.0299E-42 12983 20211116_3428_TMUAki_TMT10x_P_F1 191.69 182.6 8414700 14443000 69300 18168000 13367000 18160000 10598000 12606000 13786000 13036000 13292000 7835200 13490000 648760 18271000 12750000 18376000 10994000 13110000 13867000 12714000 12838000 6 6 2 6 6 6 6 6 6 6 6 5136800 8527500 0 11133000 12111000 15956000 9461100 7424700 8008200 8637700 7987100 4782700 7966800 340730 11246000 11545000 15766000 9690400 8015800 8209800 8386000 7705600 4 4 0 4 4 4 4 4 4 4 4 3277800 5915200 69300 7034500 1256000 2203400 1137300 5181500 5777300 4397900 5305200 3052500 5523700 308020 7025100 1205500 2609600 1303500 5094500 5657600 4327500 5132300 2 2 2 2 2 2 2 2 2 2 2 2252900000 1648700000 604160000 7243 1165 6750 39069;39070;39071 46938;46939;46940;46941;46942;46943 46939 6 GPPQEEEEEEDEEEEATKEDAEAPGIRDHESL Unmodified 3622.5191 0.51906266 1165 P51858;P51858-3;P51858-2 HDGF Hepatoma-derived growth factor yes no 0 0 0 2 By MS/MS By MS/MS 1 0 2 1 1 49.011 48.886 4 1.628E-45 15635 20211116_3439_TMUAki_TMT10x_S_F1 186.98 182.02 5009500 7714600 255.16 10568000 6764500 11872000 4499500 4916500 5986000 6467100 5013100 4664100 7209200 406440 10599000 6427000 11858000 4728500 5396300 5990100 6252300 4866100 3 3 1 3 3 3 3 3 3 3 3 3444300 5137700 0 6835200 5774500 10533000 3940100 3213700 4016500 4335500 3311800 3206700 4800300 284480 6908400 5488600 10338000 4094900 3670400 4057700 4188000 3216600 2 2 0 2 2 2 2 2 2 2 2 1565200 2576900 255.16 3732600 990050 1339200 559440 1702800 1969500 2131700 1701300 1457400 2408800 121950 3690400 938490 1520100 633640 1725800 1932400 2064200 1649500 1 1 1 1 1 1 1 1 1 1 1 3204000000 1977300000 1226700000 7244 1165 6751 39072;39073 46944;46945;46946 46946 3 GPPQQHGHHNEFDDEFEDDDPLPAIGHCK Unmodified 3337.4119 0.41191643 1936 Q5T0N5;Q5T0N5-4;Q5T0N5-3;Q5T0N5-2;Q5T0N5-5 FNBP1L Formin-binding protein 1-like yes no 0 0 0 0 By matching By MS/MS 3 0 2 1 1 47.003 46.83 6 2.6725E-09 15827 20211116_3441_TMUAki_TMT10x_S_F3 90.097 84.193 1271600 2276100 0 2587900 1307000 1146800 1056600 1867200 1856600 1528400 1921800 1183900 2125000 85403 2596600 1245600 1273400 1109600 1851900 1856100 1506700 1851800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1271600 2276100 0 2587900 1307000 1146800 1056600 1867200 1856600 1528400 1921800 1183900 2125000 85403 2596600 1245600 1273400 1109600 1851900 1856100 1506700 1851800 1 1 0 1 1 1 1 1 1 1 1 209260000 84474000 124790000 7245 1936 6752 39074;39075 46947 46947 1 GPPQSPVFEGVYNNSR Unmodified 1746.8325 0.83254733 2315 Q8WWM7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7-3;Q8WWM7-7 ATXN2L Ataxin-2-like protein yes no 0 0 0 0 By MS/MS By MS/MS 6 0.756 2 3 2 4 3 50.438 50.703 2;3 2.0644E-46 13721 20211116_3434_TMUAki_TMT10x_P_F6 238.88 224.46 18683000 29388000 203760 33305000 28238000 32461000 21069000 24594000 23627000 21301000 26004000 17397000 27436000 1870300 33687000 26908000 32944000 21826000 25304000 24009000 20939000 25011000 9 9 8 9 9 9 9 9 9 9 9 12442000 19438000 66687 21616000 22548000 27070000 15989000 16021000 15171000 13743000 16949000 11585000 18146000 1235200 21980000 21459000 26993000 16536000 16779000 15533000 13516000 16295000 6 6 6 6 6 6 6 6 6 6 6 6241500 9949800 137070 11689000 5689800 5390500 5080600 8573000 8455800 7557800 9055000 5812500 9290700 635070 11707000 5448500 5951500 5289800 8525500 8475900 7423200 8716500 3 3 2 3 3 3 3 3 3 3 3 2126400000 1294900000 831510000 7246 2315 6753 39076;39077;39078;39079;39080;39081;39082 46948;46949;46950;46951;46952;46953;46954;46955;46956 46952 9 GPQLAAQNLGISLANLLLSK Unmodified 2020.1681 0.16807497 556 P08397;P08397-4;P08397-3;P08397-2 HMBS Porphobilinogen deaminase yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 1 3 82.435 82.446 3 4.1545E-34 27113 20211116_3445_TMUAki_TMT10x_S_F6 199.15 174.96 1877700 2977300 17310 2980500 2198500 3242100 2341400 1880000 2078200 2093200 2357000 1748400 2778100 165960 3044300 2112000 3256100 2359400 1986600 2135700 2035500 2265100 3 3 1 3 3 3 3 3 3 3 3 1304200 2030700 17310 2121100 1486700 2594000 1611900 1290900 1452500 1418600 1621600 1214400 1895200 123990 2164600 1429500 2584100 1623500 1382100 1490700 1380200 1559100 2 2 1 2 2 2 2 2 2 2 2 573570 946570 0 859350 711780 648100 729550 589160 625730 674570 735340 533990 882920 41973 879680 682450 671940 735870 604550 645000 655300 705970 1 1 0 1 1 1 1 1 1 1 1 541070000 62217000 478860000 7247 556 6754 39083;39084;39085;39086 46957;46958;46959;46960 46959 4 GPQLFHMDPSGTFVQCDAR Oxidation (M) 2177.9623 0.96225765 835 P28066;P28066-2 PSMA5 Proteasome subunit alpha type-5 yes no 0 0 1 0 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 49.228 49.367 3 2.4295E-08 13174 20211116_3434_TMUAki_TMT10x_P_F6 102.89 92.04 3438800 5409700 55254 6574100 5040500 5851200 3834800 4425000 4739400 4152400 4985700 3202000 5052200 330910 6613700 4804300 5973300 3980800 4562900 4790700 4066700 4801900 3 3 2 3 3 3 3 3 3 3 3 2341000 3580500 21027 4226500 4243300 5067000 3119600 2867100 3062100 2832200 3083500 2179700 3343400 212210 4278700 4039900 5060600 3221300 3025000 3118400 2767500 2973900 2 2 1 2 2 2 2 2 2 2 2 1097800 1829300 34227 2347600 797200 784160 715170 1558000 1677400 1320200 1902200 1022400 1708800 118700 2335000 764400 912680 759500 1537900 1672300 1299200 1828000 1 1 1 1 1 1 1 1 1 1 1 849690000 600480000 249200000 7248 835 6755 39087;39088;39089 46961;46962;46963;46964 46962 1008 4 GPQPPTVSPIR Unmodified 1147.635 0.63495714 1042 P46087;P46087-2;P46087-4 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 37.623 38.007 2 5.8962E-08 10501 20211116_3435_TMUAki_TMT10x_P_F7 144.65 120.69 577140 910960 4075.1 1055400 1165600 1039600 647840 709910 823060 672910 863090 537390 850570 58053 1066300 1104700 1052700 689620 737320 831080 658720 831360 3 3 2 3 3 3 3 3 3 3 3 353410 549970 648.61 633580 987410 885840 473750 426380 496520 408420 526840 329050 513500 36950 644220 933780 876550 508110 456160 505210 399620 507290 2 2 1 2 2 2 2 2 2 2 2 223730 360990 3426.5 421850 178160 153810 174080 283530 326540 264490 336250 208340 337070 21104 422050 170930 176140 181510 281160 325870 259100 324070 1 1 1 1 1 1 1 1 1 1 1 44985000 38443000 6542200 7249 1042 6756 39090;39091;39092 46965;46966;46967 46965 3 GPRPIREAGEQGDIEPR Unmodified 1875.9551 0.95512208 1616 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 0 0 0 2 By matching By MS/MS 2.5 0.5 1 1 1 1 30.052 29.806 4 9.4885E-11 8930 20211116_3441_TMUAki_TMT10x_S_F3 130.27 86.727 54784 101150 1337.2 113220 98426 66117 68169 88394 69421 62592 97582 51019 94432 6399.5 113950 93696 70762 70768 87976 71569 62194 93262 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 54784 101150 1337.2 113220 98426 66117 68169 88394 69421 62592 97582 51019 94432 6399.5 113950 93696 70762 70768 87976 71569 62194 93262 1 1 1 1 1 1 1 1 1 1 1 20687000 5829100 14858000 7250 1616 6757 39093;39094 46968 46968 1 GPSFPEPLREEQDLER Unmodified 1897.917 0.91700524 512 P06132 UROD Uroporphyrinogen decarboxylase yes yes 0 0 0 1 By MS/MS By MS/MS 2.71 1.03 1 2 2 2 4 3 50.27 50.181 3 9.1277E-29 17182 20211116_3441_TMUAki_TMT10x_S_F3 180.1 154.78 12099000 21479000 188560 23503000 15126000 19471000 14135000 14244000 14026000 13420000 17269000 11266000 20049000 1188200 23774000 14487000 19967000 14386000 14721000 14389000 13141000 16558000 7 7 5 7 7 7 7 7 7 7 7 6159500 10153000 43382 11678000 9658500 13580000 8496900 6973700 6980400 6634100 8710800 5735300 9479200 581510 11834000 9233200 13569000 8632600 7413600 7229100 6493200 8349400 3 3 2 3 3 3 3 3 3 3 3 5939100 11326000 145180 11825000 5467100 5891200 5637900 7269900 7045700 6786000 8558100 5530800 10570000 606730 11940000 5254200 6398600 5753400 7307400 7159800 6647500 8208900 4 4 3 4 4 4 4 4 4 4 4 1578700000 920510000 658240000 7251 512 6758 39095;39096;39097;39098;39099;39100;39101 46969;46970;46971;46972;46973;46974;46975;46976 46974 8 GPSGCVESLEVTCR Unmodified 1549.6865 0.68647672 1065 P47897;P47897-2 QARS Glutamine--tRNA ligase yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 41.88 41.864 2 3.5438E-23 11619 20211116_3442_TMUAki_TMT10x_S_F4 186.17 170.83 771150 1165600 3740.5 1577600 1440900 1321700 919340 761440 729940 695000 1011000 718040 1089200 76078 1576400 1368700 1349700 953930 800460 760850 681510 966540 2 2 1 2 2 2 2 2 2 2 2 511960 691980 0 986490 1220600 1122500 717400 409890 397960 396030 576970 476680 646800 51648 987610 1157700 1119100 744110 452300 425180 387360 551040 1 1 0 1 1 1 1 1 1 1 1 259190 473610 3740.5 591060 220330 199250 201940 351550 331980 298970 434000 241360 442370 24430 588830 211020 230570 209820 348170 335660 294150 415500 1 1 1 1 1 1 1 1 1 1 1 241080000 138510000 102570000 7252 1065 6759 39102;39103;39104 46977;46978 46978 2 GPSGLLVYQGK Unmodified 1117.6132 0.61315906 465 P00387;P00387-2;P00387-3 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 0 0 0 0 By MS/MS By MS/MS 2.75 3.03 3 1 3 1 53.225 53.259 2;3 2.5045E-11 17455 20211116_3439_TMUAki_TMT10x_S_F1 134.68 104.02 5405600 8934500 70025 10259000 12405000 13465000 7607400 7436500 8145300 6563100 7499400 5033500 8341800 586240 10420000 11777000 13384000 7984100 7839000 8240000 6445900 7254400 3 3 2 3 3 3 3 3 3 3 3 5405600 8934500 70025 10259000 12405000 13465000 7607400 7436500 8145300 6563100 7499400 5033500 8341800 586240 10420000 11777000 13384000 7984100 7839000 8240000 6445900 7254400 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 877210000 877210000 0 7253 465 6760 39105;39106;39107;39108 46979;46980;46981;46982 46982 4 GPSSVEDIK Unmodified 930.46583 0.46582612 524 P06748;P06748-3;P06748-2 NPM1 Nucleophosmin yes no 0 0 0 0 By MS/MS By MS/MS 4 1.35 2 2 3 2 2 5 6 38.615 38.598 2;3 4.7638E-05 9507 20211116_3442_TMUAki_TMT10x_S_F4 149.82 96.646 19788000 32976000 64105 28415000 27296000 28379000 23801000 15333000 17347000 15737000 23236000 18424000 30753000 1664500 29309000 26080000 28620000 24126000 16260000 18139000 15353000 22232000 12 12 7 12 12 12 12 12 12 12 12 12995000 20979000 19611 18163000 19384000 22226000 15023000 10150000 11402000 10256000 14627000 12099000 19565000 1057300 18789000 18469000 22121000 15354000 10933000 11872000 10012000 14010000 4 4 1 4 4 4 4 4 4 4 4 6793400 11997000 44495 10252000 7912500 6153000 8778500 5182400 5945200 5480700 8609000 6325500 11188000 607220 10521000 7610500 6499300 8771400 5327000 6266700 5340500 8222400 8 8 6 8 8 8 8 8 8 8 8 1344000000 848670000 495370000 7254 524 6761 39109;39110;39111;39112;39113;39114;39115;39116;39117;39118;39119 46983;46984;46985;46986;46987;46988;46989;46990;46991;46992;46993;46994;46995;46996;46997;46998 46993 16 GPSVPFSIFDEFLLSEK Unmodified 1910.9666 0.96658119 276 O60566;O60566-3 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta yes no 0 0 0 0 By matching By MS/MS 6.33 0.471 2 1 1 2 82.261 82.272 3 0.022516 27069 20211116_3445_TMUAki_TMT10x_S_F6 41.86 24.981 294720 549580 0 499950 415150 370140 435300 346910 296440 312990 417960 274360 512630 19320 511600 398130 384560 436190 352870 311970 307080 399430 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 294720 549580 0 499950 415150 370140 435300 346910 296440 312990 417960 274360 512630 19320 511600 398130 384560 436190 352870 311970 307080 399430 1 1 0 1 1 1 1 1 1 1 1 82750000 16044000 66706000 7255 276 6762 39120;39121;39122 46999 46999 1 GPSYGLSAEVK Unmodified 1106.5608 0.56078914 1802;2572 Q15417;Q15417-3;Q99439;Q99439-2 CNN3;CNN2 Calponin-3;Calponin-2 no no 0 0 0 0 By MS/MS By MS/MS 4.78 0.786 4 3 2 4 5 44.775 44.927 2;3 8.4854E-15 12358 20211116_3431_TMUAki_TMT10x_P_F4 195.36 142.78 24154000 38337000 62739 41322000 32199000 27135000 22298000 20246000 20927000 18413000 28550000 22489000 35784000 2019100 41732000 30619000 28364000 23093000 20878000 21620000 18058000 27305000 9 9 3 9 9 9 9 9 9 9 9 11324000 17327000 0 18859000 20652000 18272000 11209000 8057600 9142100 7927600 12322000 10543000 16174000 949560 19122000 19557000 18421000 11800000 8704000 9503800 7747900 11788000 4 4 0 4 4 4 4 4 4 4 4 12830000 21010000 62739 22463000 11546000 8863200 11088000 12189000 11785000 10485000 16227000 11946000 19610000 1069500 22610000 11061000 9942900 11293000 12174000 12116000 10310000 15516000 5 5 3 5 5 5 5 5 5 5 5 1970800000 1172000000 798800000 7256 1802;2572 6763 39123;39124;39125;39126;39127;39128;39129;39130;39131 47000;47001;47002;47003;47004;47005;47006;47007;47008 47001 9 GPTPFNQNQLHQLR Unmodified 1648.8434 0.84338678 1154 P51532-5;P51532-2;P51532-3;P51532-4;P51532 SMARCA4 Transcription activator BRG1 yes no 0 0 0 0 By MS/MS By MS/MS 4.14 3.09 2 2 1 2 4 3 38.931 39.042 3 4.2736E-45 9675 20211116_3428_TMUAki_TMT10x_P_F1 276.71 239.55 4311800 7364500 67185 8563400 6577100 6420000 4090400 5784200 6453300 5216500 6344800 4015200 6876400 444420 8619300 6247500 6658200 4352300 5896100 6457900 5118100 6124000 10 10 7 10 10 10 10 10 10 10 10 1899100 2987900 34133 3468500 4602100 4624600 2562400 2365300 2575300 2037900 2623000 1768500 2789800 227120 3521800 4363500 4589200 2706200 2509100 2621100 2003800 2528900 4 4 4 4 4 4 4 4 4 4 4 2412700 4376600 33052 5094800 1974900 1795400 1528000 3418900 3878000 3178600 3721800 2246600 4086600 217300 5097500 1884000 2069000 1646100 3387000 3836900 3114300 3595100 6 6 3 6 6 6 6 6 6 6 6 3139400000 1808800000 1330500000 7257 1154 6764 39132;39133;39134;39135;39136;39137;39138 47009;47010;47011;47012;47013;47014;47015;47016;47017;47018 47009 10 GPTSSPCEEEGDEGEEDRTSDLRDEASSVTR Unmodified 3396.4132 0.4131578 2115 Q86VM9 ZC3H18 Zinc finger CCCH domain-containing protein 18 yes yes 0 0 0 2 By MS/MS 1 0 1 1 38.216 38.13 4 1.2333E-97 11201 20211116_3439_TMUAki_TMT10x_S_F1 270 258.24 228170 460830 3564.3 579620 87996 136810 58159 355020 397150 322940 354530 212470 430450 20275 576300 83840 171590 71048 348980 387690 316730 343320 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 228170 460830 3564.3 579620 87996 136810 58159 355020 397150 322940 354530 212470 430450 20275 576300 83840 171590 71048 348980 387690 316730 343320 1 1 1 1 1 1 1 1 1 1 1 85937000 0 85937000 7258 2115 6765 39139 47019 47019 1 GPTSTSIDNIDGTPVRDER Unmodified 2028.9712 0.97122565 1948 Q5VT52;Q5VT52-2;Q5VT52-3;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 38.191 37.942 3 7.5744E-41 12155 20211116_3441_TMUAki_TMT10x_S_F3 188.41 160.61 327170 477920 18.15 720740 1237600 1020200 524280 529510 648630 399180 538050 304630 446860 39893 722600 1168800 1009800 572950 559230 650510 395230 522460 1 1 1 1 1 1 1 1 1 1 1 327170 477920 18.15 720740 1237600 1020200 524280 529510 648630 399180 538050 304630 446860 39893 722600 1168800 1009800 572950 559230 650510 395230 522460 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 69410000 69410000 0 7259 1948 6766 39140;39141 47020;47021 47021 2 GPVEGYEENEEFLR Unmodified 1666.7475 0.74748029 3131 Q9UI30;Q9UI30-2 TRMT112 Multifunctional methyltransferase subunit TRM112-like protein yes no 0 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 54.155 53.939 2 1.9528E-99 15907 20211116_3440_TMUAki_TMT10x_S_F2 361.66 336.8 40529000 66556000 0 70142000 44725000 57348000 40804000 38021000 38547000 35634000 48737000 37730000 62118000 2564100 71112000 42730000 58777000 41524000 39561000 39675000 34900000 46700000 8 8 0 8 8 8 8 8 8 8 8 23241000 36489000 0 39253000 27357000 42130000 26913000 20998000 21913000 19884000 27319000 21635000 34058000 1400500 39892000 26182000 42267000 27167000 22382000 22703000 19466000 26187000 3 3 0 3 3 3 3 3 3 3 3 17288000 30068000 0 30889000 17368000 15218000 13890000 17023000 16634000 15750000 21418000 16095000 28059000 1163600 31220000 16549000 16510000 14356000 17179000 16972000 15435000 20513000 5 5 0 5 5 5 5 5 5 5 5 7252900000 4502100000 2750900000 7260 3131 6767 39142;39143;39144;39145;39146;39147 47022;47023;47024;47025;47026;47027;47028;47029 47027 8 GPVFAPPYEPLPENVK Unmodified 1752.9087 0.90867238 624 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.75 0.924 1 4 4 3 6 6 68.791 68.889 2;3 1.3504E-28 21557 20211116_3445_TMUAki_TMT10x_S_F6 184.24 152.64 90552000 151180000 1088600 146030000 102280000 134280000 105660000 103270000 99441000 107790000 116560000 84315000 141040000 7908300 149160000 98175000 136820000 106810000 106700000 102040000 105090000 111910000 20 20 10 20 20 20 20 20 20 20 20 46246000 72375000 428420 73418000 47677000 84842000 53652000 48907000 47332000 52922000 56793000 43057000 67537000 3538700 74995000 45844000 84919000 53914000 51659000 48764000 51521000 54493000 10 10 3 10 10 10 10 10 10 10 10 44306000 78801000 660150 72612000 54607000 49435000 52006000 54360000 52109000 54871000 59765000 41258000 73506000 4369600 74166000 52330000 51902000 52891000 55036000 53279000 53569000 57416000 10 10 7 10 10 10 10 10 10 10 10 17980000000 9398500000 8581400000 7261 624 6768 39148;39149;39150;39151;39152;39153;39154;39155;39156;39157;39158;39159 47030;47031;47032;47033;47034;47035;47036;47037;47038;47039;47040;47041;47042;47043;47044;47045;47046;47047;47048;47049;47050 47047 21 GPVGLEGLLTTK Unmodified 1183.6812 0.68123863 1229 P54886;P54886-2 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes no 0 0 0 0 By MS/MS By MS/MS 6.8 0.748 4 4 2 5 5 70.025 70.165 2;3 2.5478E-16 23578 20211116_3435_TMUAki_TMT10x_P_F7 201.75 156.66 57343000 94687000 236920 85458000 69956000 100220000 65611000 70000000 64493000 69764000 74660000 53390000 88319000 4609300 88054000 66947000 100510000 66745000 72689000 66020000 68145000 71707000 9 9 5 9 9 9 9 9 9 9 9 39028000 63789000 193430 55963000 47268000 81122000 48335000 46900000 45069000 47838000 49759000 36338000 59493000 3261000 58020000 45344000 80321000 48871000 49439000 46159000 46682000 47856000 6 6 3 6 6 6 6 6 6 6 6 18316000 30898000 43495 29495000 22688000 19095000 17276000 23101000 19424000 21926000 24900000 17052000 28826000 1348300 30033000 21603000 20185000 17874000 23250000 19861000 21463000 23851000 3 3 2 3 3 3 3 3 3 3 3 5631100000 4397300000 1233800000 7262 1229 6769 39160;39161;39162;39163;39164;39165;39166;39167;39168;39169 47051;47052;47053;47054;47055;47056;47057;47058;47059;47060;47061;47062 47054 12 GPVKPTGGPGGGGTQTQQQMNQLK Oxidation (M) 2381.1758 0.17575589 810 P26196 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 0 0 1 1 By MS/MS By MS/MS 1 0 2 1 1 34.693 34.687 4 7.3524E-38 9800 20211116_3439_TMUAki_TMT10x_S_F1 189.79 175.77 841450 1440100 0 1934400 2013100 1339900 1078700 1174100 1756200 993420 1539400 783250 1345600 59078 1929600 1905000 1398000 1164000 1196700 1749300 977670 1491700 3 3 0 3 3 3 3 3 3 3 3 272100 461960 0 675150 1524400 839140 467400 351570 536070 345380 522150 253260 431860 29506 676150 1434400 833780 531500 381880 541860 337570 504130 1 1 0 1 1 1 1 1 1 1 1 569350 978180 0 1259200 488740 500780 611280 822490 1220100 648040 1017300 529990 913790 29571 1253400 470630 564170 632480 814800 1207400 640100 987610 2 2 0 2 2 2 2 2 2 2 2 216610000 144320000 72295000 7263 810 6770 39170;39171 47063;47064;47065 47064 961 3 GPVKPTGGPGGGGTQTQQQMNQLK Unmodified 2365.1808 0.18084127 810 P26196 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 0 0 0 1 By matching By MS/MS 1.5 0.5 1 1 1 1 39.365 39.408 4 4.751E-48 9812 20211116_3440_TMUAki_TMT10x_S_F2 207.22 191.63 197490 326260 0 567380 128570 89558 132100 147450 185340 166720 319990 183840 305340 9375.2 554640 122980 122010 135460 147580 191000 162040 304510 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 197490 326260 0 567380 128570 89558 132100 147450 185340 166720 319990 183840 305340 9375.2 554640 122980 122010 135460 147580 191000 162040 304510 1 1 0 1 1 1 1 1 1 1 1 321390000 284860000 36538000 7264 810 6770 39172;39173 47066 47066 1 GPVPAKPTVLFEK Unmodified 1381.7969 0.79693709 1961 Q66K74;Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain yes no 0 0 0 1 By MS/MS 2 0 2 2 56.054 55.805 3 0.00023333 17970 20211116_3429_TMUAki_TMT10x_P_F2 83.633 54.906 4346300 6853900 90145 7866200 9224500 10885000 6269900 6931000 6473200 5909800 6657800 4047500 6399200 512680 7998500 8776100 10813000 6520600 7216000 6583000 5813900 6416900 1 1 1 1 1 1 1 1 1 1 1 4346300 6853900 90145 7866200 9224500 10885000 6269900 6931000 6473200 5909800 6657800 4047500 6399200 512680 7998500 8776100 10813000 6520600 7216000 6583000 5813900 6416900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 412080000 412080000 0 7265 1961 6771 39174;39175 47067;47068 47067 2 GPVREGDVLTLLESER Unmodified 1768.9319 0.93192702 1374 P62857 RPS28 40S ribosomal protein S28 yes yes 0 0 0 1 By MS/MS By MS/MS 3.27 1.44 2 3 3 4 2 1 8 7 64.267 64.13 2;3 5.0076E-58 21400 20211116_3429_TMUAki_TMT10x_P_F2 283 249.28 107690000 172950000 892540 177490000 115060000 134650000 109390000 97046000 96331000 99984000 123600000 100270000 161400000 9339500 180100000 110200000 138970000 110850000 100660000 99539000 97528000 118390000 21 21 9 21 21 21 21 21 21 21 21 49887000 78920000 553690 80140000 49288000 84622000 53796000 44369000 42441000 45727000 55519000 46452000 73645000 4442300 81736000 47394000 85026000 53981000 47184000 44137000 44604000 53152000 10 10 5 10 10 10 10 10 10 10 10 57801000 94029000 338850 97347000 65768000 50030000 55593000 52677000 53890000 54257000 68082000 53818000 87751000 4897200 98368000 62805000 53946000 56870000 53472000 55402000 52925000 65237000 11 11 4 11 11 11 11 11 11 11 11 33489000000 17737000000 15752000000 7266 1374 6772 39176;39177;39178;39179;39180;39181;39182;39183;39184;39185;39186;39187;39188;39189;39190 47069;47070;47071;47072;47073;47074;47075;47076;47077;47078;47079;47080;47081;47082;47083;47084;47085;47086;47087;47088;47089 47071 21 GPVREGDVLTLLESEREAR Unmodified 2125.1127 0.11274493 1374 P62857 RPS28 40S ribosomal protein S28 yes yes 0 0 0 2 By MS/MS By MS/MS 3.18 1.27 1 3 2 3 2 5 6 57.466 57.389 3;4 2.9449E-90 20122 20211116_3441_TMUAki_TMT10x_S_F3 318.13 288.02 33739000 50561000 194380 56695000 43251000 41963000 30116000 38692000 36042000 32571000 41480000 31411000 47202000 2499300 57185000 41113000 43584000 31418000 39321000 36601000 32062000 39846000 9 9 3 9 9 9 9 9 9 9 9 15548000 22991000 133800 24763000 18121000 28578000 17050000 18021000 16729000 15128000 19293000 14476000 21460000 1267200 25194000 17345000 28641000 17341000 18768000 17124000 14894000 18532000 4 4 2 4 4 4 4 4 4 4 4 18191000 27570000 60579 31932000 25130000 13385000 13066000 20671000 19313000 17443000 22187000 16935000 25742000 1232100 31991000 23768000 14944000 14077000 20553000 19476000 17169000 21314000 5 5 1 5 5 5 5 5 5 5 5 10855000000 5764800000 5089900000 7267 1374 6773 39191;39192;39193;39194;39195;39196;39197;39198;39199;39200;39201 47090;47091;47092;47093;47094;47095;47096;47097;47098;47099;47100 47096 11 GPVSGTEPEPVYSMEAADYR Oxidation (M) 2169.9525 0.95246405 1699 Q14247;Q14247-3;Q14247-2 CTTN Src substrate cortactin yes no 0 0 1 0 By MS/MS By MS/MS 2.7 0.9 1 3 4 2 5 5 47.084 46.959 2;3 4.804E-41 14379 20211116_3429_TMUAki_TMT10x_P_F2 206.74 196.42 10489000 19406000 52502 20335000 16825000 20767000 11979000 20630000 21702000 17242000 17297000 9765500 18111000 899590 20685000 16007000 21127000 12706000 20881000 21496000 16979000 16822000 12 12 4 12 12 12 12 12 12 12 12 5479200 9339100 0 10366000 12708000 16598000 8977100 10098000 10686000 8425600 8324500 5101000 8718200 471500 10595000 12086000 16378000 9353800 10545000 10712000 8297800 8103500 6 6 0 6 6 6 6 6 6 6 6 5009500 10067000 52502 9968900 4117600 4169500 3002300 10532000 11016000 8815900 8972000 4664500 9393200 428080 10090000 3921800 4748300 3351800 10336000 10784000 8680800 8718200 6 6 4 6 6 6 6 6 6 6 6 3044800000 1803000000 1241800000 7268 1699 6774 39202;39203;39204;39205;39206;39207;39208;39209;39210;39211 47101;47102;47103;47104;47105;47106;47107;47108;47109;47110;47111;47112 47102 2290 12 GPVSGTEPEPVYSMEAADYR Unmodified 2153.9575 0.95754942 1699 Q14247;Q14247-3;Q14247-2 CTTN Src substrate cortactin yes no 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 56.033 55.801 3 1.5461E-07 16699 20211116_3440_TMUAki_TMT10x_S_F2 93.269 84.561 3596600 5566900 44709 5920600 4768100 7165700 4403200 3795200 3700500 3411600 4455700 3349100 5195800 356260 6033600 4565500 7147400 4463600 4017300 3822200 3347800 4274900 2 2 2 2 2 2 2 2 2 2 2 3596600 5566900 44709 5920600 4768100 7165700 4403200 3795200 3700500 3411600 4455700 3349100 5195800 356260 6033600 4565500 7147400 4463600 4017300 3822200 3347800 4274900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 726020000 726020000 0 7269 1699 6774 39212;39213;39214 47113;47114;47115 47115 3 GPVTDVAYSHDGAFLAVCDASK Unmodified 2279.0528 0.052846792 307 O75083;O75083-3 WDR1 WD repeat-containing protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 5 1.07 1 1 2 3 5 2 60.011 60.099 3;4 3.6919E-28 17560 20211116_3434_TMUAki_TMT10x_P_F6 179.41 168.47 76433000 134600000 865330 137600000 108090000 162800000 81892000 77502000 55051000 66123000 95473000 71156000 125610000 5419800 140540000 102900000 162380000 83606000 82763000 58614000 65048000 90848000 11 11 6 11 11 11 11 11 11 11 11 67997000 119820000 865330 122600000 97803000 154570000 73903000 69310000 48348000 58336000 84862000 63302000 111820000 4752200 125350000 93093000 153580000 75422000 74444000 51599000 57426000 80733000 9 9 6 9 9 9 9 9 9 9 9 8436300 14783000 0 14996000 10288000 8235300 7989100 8191800 6703600 7787000 10611000 7854600 13795000 667610 15182000 9802700 8805600 8184100 8319000 7014600 7621900 10115000 2 2 0 2 2 2 2 2 2 2 2 5253500000 3555600000 1697900000 7270 307 6775 39215;39216;39217;39218;39219;39220;39221 47116;47117;47118;47119;47120;47121;47122;47123;47124;47125;47126;47127 47124 12 GPVYVACQFPISLLQACSGMNDPDFGYSQGNPCILVK Oxidation (M) 4117.9046 0.9046147 1225 P54709;P54709-2 ATP1B3 Sodium/potassium-transporting ATPase subunit beta-3 yes no 0 0 1 0 By MS/MS By matching 2.33 0.471 2 1 1 2 80.729 80.708 4 2.9861E-17 28024 20211116_3429_TMUAki_TMT10x_P_F2 117.49 107.95 3804700 5256900 79879 5534700 2886400 6270400 3572200 3262400 2541200 3737600 3903000 3542900 4906300 355170 5637600 2788300 6274900 3555700 3483000 2678600 3630800 3722900 3 3 2 3 3 3 3 3 3 3 3 3804700 5256900 79879 5534700 2886400 6270400 3572200 3262400 2541200 3737600 3903000 3542900 4906300 355170 5637600 2788300 6274900 3555700 3483000 2678600 3630800 3722900 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1773700000 942980000 830690000 7271 1225 6776 39222;39223;39224 47128;47129;47130 47128 1643 3 GPYDVANLGLLFGLSESDAK Unmodified 2065.0368 0.036786022 1427 P78346;P78346-2 RPP30 Ribonuclease P protein subunit p30 yes no 0 0 0 0 By MS/MS 6 0 1 1 81.232 81.238 3 0.00096106 26601 20211116_3445_TMUAki_TMT10x_S_F6 65.184 50.57 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7272 1427 6777 39225 47131 47131 1 GQAAVQQLQAEGLSPR Unmodified 1651.8642 0.86418181 691;361 O75828;P16152;P16152-2 CBR3;CBR1 Carbonyl reductase [NADPH] 3;Carbonyl reductase [NADPH] 1 no no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 47.723 47.871 3 2.1102E-05 12930 20211116_3445_TMUAki_TMT10x_S_F6 91.592 54.894 12113000 20728000 76735 22706000 16253000 17328000 12402000 18604000 19088000 15783000 17902000 11278000 19349000 1032300 22943000 15486000 18013000 12988000 18767000 19084000 15531000 17306000 7 7 3 7 7 7 7 7 7 7 7 3933100 6688800 0 7571800 9146100 10354000 5733000 6068800 6365400 5306300 5605000 3661600 6244600 338970 7703700 8680000 10280000 6013200 6363800 6421000 5213800 5430500 2 2 0 2 2 2 2 2 2 2 2 8180000 14040000 76735 15134000 7107000 6974400 6669100 12535000 12722000 10477000 12297000 7616600 13105000 693360 15240000 6805500 7733300 6975100 12403000 12663000 10317000 11875000 5 5 3 5 5 5 5 5 5 5 5 1313900000 784680000 529180000 7273 361;691 6778 39226;39227;39228;39229 47132;47133;47134;47135;47136;47137;47138 47138 7 GQAFVIFK Unmodified 908.51199 0.51198846 567;559 P08579;P09012 SNRPB2;SNRPA U2 small nuclear ribonucleoprotein B'';U1 small nuclear ribonucleoprotein A no no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 62.874 62.561 2 0.00043755 20658 20211116_3429_TMUAki_TMT10x_P_F2 148.98 114.9 38875000 65069000 507750 63199000 53904000 64818000 43565000 72440000 66402000 55431000 58510000 36201000 60710000 3906700 64630000 51456000 66104000 45437000 72759000 66273000 54837000 56687000 4 4 4 4 4 4 4 4 4 4 4 14668000 23333000 150240 20974000 25692000 41220000 21027000 31656000 28903000 22723000 22594000 13658000 21764000 1510500 21866000 24526000 40528000 21816000 32401000 28835000 22561000 21991000 2 2 2 2 2 2 2 2 2 2 2 24208000 41736000 357500 42225000 28212000 23598000 22538000 40785000 37499000 32708000 35916000 22542000 38946000 2396200 42763000 26930000 25575000 23621000 40358000 37438000 32277000 34696000 2 2 2 2 2 2 2 2 2 2 2 2498400000 1366700000 1131700000 7274 559;567 6779 39230;39231;39232;39233 47139;47140;47141;47142 47139 4 GQCDLELINVCNENSLFK Unmodified 2151.9929 0.99288907 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.25 1.16 1 2 4 3 2 6 6 76.56 76.522 2;3 1.9432E-57 24371 20211116_3444_TMUAki_TMT10x_S_F5 240.37 218.17 104880000 170840000 600480 167970000 114020000 143290000 123130000 91375000 82438000 95866000 123640000 97643000 159400000 7743300 171190000 109490000 146330000 123160000 95658000 87109000 93443000 118000000 17 17 6 17 17 17 17 17 17 17 17 52712000 82384000 595580 80833000 47697000 86851000 57932000 44270000 40604000 46203000 59614000 49081000 76868000 4464300 82662000 46002000 87150000 57691000 47217000 42740000 45045000 56919000 9 9 5 9 9 9 9 9 9 9 9 52166000 88455000 4897.5 87134000 66326000 56434000 65194000 47106000 41833000 49663000 64030000 48562000 82533000 3279000 88525000 63487000 59175000 65465000 48441000 44368000 48398000 61080000 8 8 1 8 8 8 8 8 8 8 8 21986000000 11033000000 10953000000 7275 1471 6780 39234;39235;39236;39237;39238;39239;39240;39241;39242;39243;39244;39245 47143;47144;47145;47146;47147;47148;47149;47150;47151;47152;47153;47154;47155;47156;47157;47158;47159 47158 17 GQDGLQNDFLSISEDVPRPPDTVSTGK Unmodified 2871.3886 0.38864502 2537 Q96PZ0;Q96PZ0-2 PUS7 Pseudouridylate synthase 7 homolog yes no 0 0 0 1 By MS/MS 4 0 1 1 73.944 73.833 4 1.0397E-05 24589 20211116_3442_TMUAki_TMT10x_S_F4 71.67 48.498 2480900 4254200 24128 3830300 3218500 2483900 3034200 2302400 2016400 2439100 2588500 2310100 3968100 238500 3917300 3082900 2609400 3055800 2354200 2116200 2376500 2479300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2480900 4254200 24128 3830300 3218500 2483900 3034200 2302400 2016400 2439100 2588500 2310100 3968100 238500 3917300 3082900 2609400 3055800 2354200 2116200 2376500 2479300 1 1 1 1 1 1 1 1 1 1 1 534970000 0 534970000 7276 2537 6781 39246 47160 47160 1 GQDHCGIESEVVAGIPR Unmodified 1822.8632 0.86319553 543 P07858 CTSB Cathepsin B;Cathepsin B light chain;Cathepsin B heavy chain yes yes 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 46.718 46.489 3 6.4776E-08 15663 20211116_3441_TMUAki_TMT10x_S_F3 112.91 97.965 5915100 9846200 105840 10528000 6725700 7221300 5967500 6857500 6466400 6631000 7388100 5508200 9190100 592460 10642000 6435700 7552400 6108200 6983800 6589300 6485500 7098500 4 4 3 4 4 4 4 4 4 4 4 1816200 2898200 0 2944400 2779500 3794900 2334500 2025000 1862500 2114600 2181700 1691000 2704500 156130 3013200 2653400 3773800 2376600 2150900 1926800 2061500 2094700 1 1 0 1 1 1 1 1 1 1 1 4098900 6948000 105840 7583300 3946200 3426400 3633000 4832500 4603900 4516400 5206400 3817300 6485600 436330 7629200 3782300 3778600 3731600 4832900 4662500 4424000 5003800 3 3 3 3 3 3 3 3 3 3 3 315020000 96357000 218660000 7277 543 6782 39247;39248;39249 47161;47162;47163;47164 47163 4 GQDIEYIEIR Unmodified 1234.6194 0.61936665 2370 Q92878;Q92878-2;Q92878-3 RAD50 DNA repair protein RAD50 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 52.538 52.275 2 0.00040225 15251 20211116_3440_TMUAki_TMT10x_S_F2 110.39 49.951 6729300 10707000 20091 11556000 8729300 10054000 6911800 8969000 9618100 8832600 9649100 6265100 9994000 519890 11706000 8320000 10310000 7189700 9169700 9667400 8632000 9307200 3 3 1 3 3 3 3 3 3 3 3 2857300 4239400 0 4766500 5027900 6525900 3421800 3565400 4053500 3501300 3897800 2659900 3957800 199430 4851700 4776200 6473100 3574400 3772500 4090600 3422200 3764900 1 1 0 1 1 1 1 1 1 1 1 3871900 6467700 20091 6789200 3701300 3527900 3489900 5403600 5564600 5331200 5751300 3605200 6036200 320460 6854700 3543800 3837300 3615300 5397200 5576800 5209700 5542300 2 2 1 2 2 2 2 2 2 2 2 543430000 289800000 253630000 7278 2370 6783 39250;39251;39252;39253 47165;47166;47167;47168 47167 4 GQDIFIIQTIPR Unmodified 1399.7823 0.78234966 1714 Q14558;Q14558-2 PRPSAP1 Phosphoribosyl pyrophosphate synthase-associated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 68.299 68.698 2 5.867E-15 21255 20211116_3447_TMUAki_TMT10x_S_F8 159.99 119.11 14083000 24466000 19619 22330000 17162000 26556000 17980000 16998000 16464000 17123000 18453000 13112000 22822000 1155300 22994000 16472000 26578000 18149000 17768000 16887000 16718000 17739000 3 3 1 3 3 3 3 3 3 3 3 9868700 16892000 19619 15775000 12073000 21431000 12937000 12089000 11917000 12318000 12816000 9188400 15758000 806630 16256000 11595000 21274000 13045000 12770000 12200000 12021000 12335000 2 2 1 2 2 2 2 2 2 2 2 4214200 7574000 0 6555300 5088300 5125000 5043800 4908700 4548000 4805100 5637400 3923700 7063500 348650 6738100 4877000 5304400 5103100 4998600 4687100 4697100 5404500 1 1 0 1 1 1 1 1 1 1 1 893710000 482140000 411570000 7279 1714 6784 39254;39255;39256 47169;47170;47171;47172 47172 4 GQEPARADQLCQQELR Unmodified 1897.9065 0.90645733 995 P41219;P41219-2 PRPH Peripherin yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 33.091 32.86 3 7.3041E-43 10159 20211116_3441_TMUAki_TMT10x_S_F3 229.02 205.56 507400 750710 25313 1081700 1677500 1028600 643300 759810 1124100 541890 935110 472620 701730 82046 1079300 1584000 1045100 721490 779570 1115800 538220 907920 2 2 2 2 2 2 2 2 2 2 2 308080 453630 19319 567730 1529400 900010 495460 399980 628670 314190 532670 287000 423710 60652 576090 1441600 885140 560750 429340 630330 310390 516820 1 1 1 1 1 1 1 1 1 1 1 199310 297080 5994.5 513970 148130 128630 147840 359830 495380 227700 402440 185620 278010 21394 503250 142390 160000 160740 350230 485460 227830 391090 1 1 1 1 1 1 1 1 1 1 1 143560000 104250000 39307000 7280 995 6785 39257;39258 47173;47174 47174 2 GQESAGIVTSDGSSVPTFK Unmodified 1865.9007 0.90068647 1524 Q06203 PPAT Amidophosphoribosyltransferase yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 54.598 54.728 3 9.5203E-05 16559 20211116_3433_TMUAki_TMT10x_P_F5 72.568 61.129 4340000 7347600 35931 8073100 6574100 8021200 5099200 6143000 6002300 6348400 6011600 4040900 6858800 387200 8183900 6266200 8132500 5277400 6346800 6067100 6191700 5798900 3 3 2 3 3 3 3 3 3 3 3 2242800 3993600 0 4415400 4413300 6262000 3324900 3412200 3453200 3419100 3237700 2088000 3728100 178960 4502200 4201900 6201300 3433500 3613400 3499800 3339000 3130000 1 1 0 1 1 1 1 1 1 1 1 2097200 3353900 35931 3657800 2160800 1759200 1774300 2730800 2549100 2929300 2773900 1953000 3130700 208250 3681700 2064300 1931100 1844000 2733400 2567400 2852700 2668900 2 2 2 2 2 2 2 2 2 2 2 1226900000 615890000 610980000 7281 1524 6786 39259;39260;39261 47175;47176;47177 47175 3 GQETSTNPIASIFAWTR Unmodified 1877.9272 0.92717599 364 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 0 0 0 0 By MS/MS 5 3 1 1 2 79.392 79.366 2 3.2306E-29 27487 20211116_3429_TMUAki_TMT10x_P_F2 191.63 154.79 8384200 12754000 0 12363000 8288900 11323000 11656000 3683000 2744300 4890300 8216200 7805400 11900000 543510 12625000 8022700 11427000 11371000 4166300 3376000 4726400 7756500 1 1 0 1 1 1 1 1 1 1 1 8384200 12754000 0 12363000 8288900 11323000 11656000 3683000 2744300 4890300 8216200 7805400 11900000 543510 12625000 8022700 11427000 11371000 4166300 3376000 4726400 7756500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2099100000 2099100000 0 7282 364 6787 39262;39263 47178;47179 47178 2 GQEVETSVTYYR Unmodified 1430.6678 0.66777341 199 O43169 CYB5B Cytochrome b5 type B yes yes 0 0 0 0 By MS/MS By MS/MS 2.71 0.7 3 3 1 3 4 39.113 38.971 2;3 2.8645E-30 9808 20211116_3442_TMUAki_TMT10x_S_F4 259.55 229.36 4516000 6900900 0 8464200 6073000 5401000 4644700 3928700 4451700 3833800 5469100 4204300 6445100 334600 8478600 5783200 5658000 4780000 4065900 4573400 3748200 5244300 7 7 0 7 7 7 7 7 7 7 7 2091700 3036200 0 3704900 4129400 3697800 2147900 2012300 2330400 1877800 2453300 1947400 2835600 168270 3732300 3907500 3729600 2288000 2127000 2367200 1839500 2362800 2 2 0 2 2 2 2 2 2 2 2 2424200 3864700 0 4759300 1943600 1703200 2496800 1916400 2121200 1956100 3015800 2257000 3609500 166320 4746400 1875700 1928400 2492000 1938900 2206200 1908800 2881600 5 5 0 5 5 5 5 5 5 5 5 321440000 112190000 209250000 7283 199 6788 39264;39265;39266;39267;39268;39269;39270 47180;47181;47182;47183;47184;47185;47186 47185 7 GQEVSPK Unmodified 743.38137 0.38136821 588 P09936 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 29.47 29.208 2 0.0064193 8750 20211116_3441_TMUAki_TMT10x_S_F3 103.56 32.651 384230 574570 0 489790 350510 344710 412860 168850 197780 211360 348770 357730 535820 28702 503480 337480 356160 408860 181830 215970 204680 331770 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 384230 574570 0 489790 350510 344710 412860 168850 197780 211360 348770 357730 535820 28702 503480 337480 356160 408860 181830 215970 204680 331770 1 1 0 1 1 1 1 1 1 1 1 8989000 0 8989000 7284 588 6789 39271 47187 47187 1 GQFAEHLLGAGFVSSR Unmodified 1674.8478 0.84780346 2794 Q9H2U1;Q9H2U1-3;Q9H2U1-2 DHX36 ATP-dependent RNA helicase DHX36 yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 58.974 58.778 3 3.5112E-05 19707 20211116_3439_TMUAki_TMT10x_S_F1 84.493 68.922 14272000 23361000 138100 22619000 17574000 22685000 15485000 18673000 17935000 16552000 18380000 13290000 21795000 1286700 23129000 16802000 23016000 15892000 19125000 18155000 16253000 17717000 5 5 2 5 5 5 5 5 5 5 5 6937200 10683000 0 10586000 9558200 14907000 8379900 8458700 8090000 7707200 8761800 6458800 9968300 553950 10871000 9131500 14775000 8552700 8903200 8266700 7558200 8431400 2 2 0 2 2 2 2 2 2 2 2 7335300 12678000 138100 12033000 8015400 7777900 7105000 10214000 9845300 8844800 9618400 6830800 11827000 732760 12258000 7670100 8240900 7339400 10221000 9887900 8694700 9285500 3 3 2 3 3 3 3 3 3 3 3 1704800000 990050000 714730000 7285 2794 6790 39272;39273;39274;39275 47188;47189;47190;47191;47192 47190 5 GQFNFDHPDAFDNELILK Unmodified 2119.0011 0.0010692176 2743 Q9BZX2 UCK2 Uridine-cytidine kinase 2 yes yes 0 0 0 0 By MS/MS 4 0 1 1 73.722 73.768 3 0.047849 24124 20211116_3431_TMUAki_TMT10x_P_F4 39.983 21.845 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7286 2743 6791 39276 47193 47193 1 GQFSTDELVAEVEK Unmodified 1550.7464 0.74641766 1471 Q00610;Q00610-2;P53675;P53675-2 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 68.17 67.874 3 3.2471E-09 22861 20211116_3429_TMUAki_TMT10x_P_F2 121.99 101.21 3043700 4635600 14153 4617900 3012900 4984200 3387100 2630200 2693800 2883900 3447300 2834100 4325500 265100 4717800 2899100 5002100 3394600 2800600 2797600 2806100 3302200 1 1 1 1 1 1 1 1 1 1 1 3043700 4635600 14153 4617900 3012900 4984200 3387100 2630200 2693800 2883900 3447300 2834100 4325500 265100 4717800 2899100 5002100 3394600 2800600 2797600 2806100 3302200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 807360000 807360000 0 7287 1471 6792 39277;39278 47194 47194 1 GQFSTDELVAEVEKR Unmodified 1706.8475 0.84752869 1471 Q00610;Q00610-2;P53675;P53675-2 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 1 By MS/MS By MS/MS 3.67 1.65 2 1 2 3 2 2 6 6 61.006 60.9 2;3 1.9233E-69 18861 20211116_3431_TMUAki_TMT10x_P_F4 299.25 261.02 182690000 313080000 2919200 302410000 217440000 267960000 195300000 225290000 208910000 218810000 249840000 170120000 292090000 18146000 308740000 208090000 274140000 199680000 231020000 213390000 213960000 239740000 14 14 11 14 14 14 14 14 14 14 14 68684000 111060000 806830 105790000 90755000 149070000 87414000 85199000 77020000 78478000 86203000 63956000 103620000 6548100 108940000 86971000 147760000 88520000 89647000 79135000 76922000 82873000 8 8 5 8 8 8 8 8 8 8 8 114010000 202010000 2112400 196620000 126680000 118880000 107890000 140090000 131890000 140330000 163630000 106170000 188480000 11598000 199800000 121120000 126380000 111160000 141370000 134250000 137040000 156870000 6 6 6 6 6 6 6 6 6 6 6 28647000000 14851000000 13796000000 7288 1471 6793 39279;39280;39281;39282;39283;39284;39285;39286;39287;39288;39289;39290 47195;47196;47197;47198;47199;47200;47201;47202;47203;47204;47205;47206;47207;47208;47209;47210;47211 47200 17 GQGCTAYDVAVNSDFYRR Unmodified 2077.9276 0.9275867 2987 Q9NWS0 PIH1D1 PIH1 domain-containing protein 1 yes yes 0 0 0 1 By MS/MS 6 0 1 1 47.755 47.916 3 0.058007 12949 20211116_3445_TMUAki_TMT10x_S_F6 38.6 26.315 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7289 2987 6794 39291 47212 47212 1 GQGVYLGMPGCLPVYDALAGEFIR Unmodified 2582.2662 0.26615081 858 P30040 ERP29 Endoplasmic reticulum resident protein 29 yes yes 0 0 0 0 By MS/MS By matching 1.5 0.5 1 1 1 1 81.188 81.181 3 6.4593E-08 26792 20211116_3428_TMUAki_TMT10x_P_F1 95.153 86.152 825060 1488500 2633.6 1365500 788760 1379500 920890 576430 720980 723990 1142200 768230 1388500 70349 1402000 759780 1386400 921000 631020 757170 701000 1088800 1 1 1 1 1 1 1 1 1 1 1 825060 1488500 2633.6 1365500 788760 1379500 920890 576430 720980 723990 1142200 768230 1388500 70349 1402000 759780 1386400 921000 631020 757170 701000 1088800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 675420000 541060000 134360000 7290 858 6795 39292;39293 47213 47213 1 GQGVYLGMPGCLPVYDALAGEFIR Oxidation (M) 2598.2611 0.26106543 858 P30040 ERP29 Endoplasmic reticulum resident protein 29 yes yes 0 0 1 0 By MS/MS By MS/MS 7.6 0.49 2 3 3 2 80.1 80.108 2;3 1.1962E-28 26448 20211116_3436_TMUAki_TMT10x_P_F8 163.9 151.92 8660300 14574000 89032 13485000 8771600 15464000 10533000 9607000 9560500 11002000 11177000 8064200 13595000 792910 13863000 8459700 15500000 10562000 10105000 9826100 10688000 10732000 5 5 3 5 5 5 5 5 5 5 5 6127500 10300000 89032 9482100 5420900 11523000 6579800 6444000 6369700 7518900 7695700 5706000 9608100 581090 9761600 5232300 11499000 6607100 6840300 6536400 7299100 7382700 3 3 3 3 3 3 3 3 3 3 3 2532800 4273600 0 4002700 3350700 3940800 3953700 3163000 3190800 3483300 3481000 2358200 3986700 211820 4101600 3227300 4000900 3955200 3264800 3289800 3388800 3349000 2 2 0 2 2 2 2 2 2 2 2 4134600000 2144200000 1990400000 7291 858 6795 39294;39295;39296;39297;39298 47214;47215;47216;47217;47218 47216 1024 5 GQHVPGSPFQFTVGPLGEGGAHK Unmodified 2303.1447 0.14471376 755;1703 P21333;P21333-2;Q14315;Q14315-2 FLNA;FLNC Filamin-A;Filamin-C no no 0 0 0 0 By MS/MS By MS/MS 5 3.29 2 1 2 3 2 54.426 54.518 4 2.6901E-15 15973 20211116_3436_TMUAki_TMT10x_P_F8 126.02 109.71 22199000 37055000 324830 39345000 30066000 40410000 27523000 30285000 29030000 29096000 32361000 20671000 34585000 2171000 39993000 28779000 40874000 28097000 31267000 29585000 28466000 31114000 8 8 4 8 8 8 8 8 8 8 8 14094000 22362000 239710 24089000 20863000 32188000 19217000 19354000 18316000 18399000 20561000 13124000 20873000 1447500 24574000 19975000 32003000 19551000 20297000 18753000 18008000 19765000 5 5 3 5 5 5 5 5 5 5 5 8105000 14693000 85113 15256000 9202800 8221400 8306000 10932000 10714000 10698000 11800000 7546800 13712000 723500 15419000 8803800 8870300 8546500 10971000 10832000 10458000 11349000 3 3 1 3 3 3 3 3 3 3 3 4088500000 2295800000 1792700000 7292 755;1703 6796 39299;39300;39301;39302;39303 47219;47220;47221;47222;47223;47224;47225 47221 7 GQILMPNIGYGSNK Oxidation (M) 1506.7501 0.75006325 1382 P62910 RPL32 60S ribosomal protein L32 yes yes 0 0 1 0 By MS/MS 8 0 1 1 51.784 51.876 3 0.012172 14922 20211116_3436_TMUAki_TMT10x_P_F8 52.966 40.088 2134900 3728800 104550 3723800 3799800 5390200 3046800 3134400 3271200 2912900 3166400 1988600 3479300 297760 3824100 3630800 5337700 3136800 3294000 3314400 2854000 3057800 1 1 1 1 1 1 1 1 1 1 1 2134900 3728800 104550 3723800 3799800 5390200 3046800 3134400 3271200 2912900 3166400 1988600 3479300 297760 3824100 3630800 5337700 3136800 3294000 3314400 2854000 3057800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 202360000 202360000 0 7293 1382 6797 39304 47226 47226 1854 1 GQILMPNIGYGSNKK Oxidation (M) 1634.845 0.84502627 1382 P62910 RPL32 60S ribosomal protein L32 yes yes 0 0 1 1 By MS/MS By MS/MS 2.8 0.4 1 4 3 2 46.054 45.865 3;4 2.0138E-05 14221 20211116_3430_TMUAki_TMT10x_P_F3 97.797 79.433 5897400 8778200 19466 13572000 14049000 12037000 6939300 7687700 9473200 6326700 8399600 5490700 8208900 548750 13484000 13289000 12259000 7489000 7995100 9488400 6235000 8136100 5 5 2 5 5 5 5 5 5 5 5 4651900 6823800 19466 10290000 13321000 11366000 6209700 5962900 7207300 5010700 6535200 4331200 6380300 495860 10269000 12593000 11391000 6701500 6306800 7264700 4932900 6325100 4 4 2 4 4 4 4 4 4 4 4 1245600 1954400 0 3281800 728160 670710 729620 1724900 2265800 1316000 1864500 1159400 1828700 52890 3215200 695430 868020 787570 1688300 2223600 1302200 1811000 1 1 0 1 1 1 1 1 1 1 1 886410000 673280000 213140000 7294 1382 6798 39305;39306;39307;39308;39309 47227;47228;47229;47230;47231 47229 1854 5 GQILMPNIGYGSNKK Unmodified 1618.8501 0.85011165 1382 P62910 RPL32 60S ribosomal protein L32 yes yes 0 0 0 1 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 53.37 53.217 3 2.7789E-10 17419 20211116_3430_TMUAki_TMT10x_P_F3 120.66 101.09 10526000 16053000 56329 26251000 14075000 10685000 9382200 6008800 5588600 6310900 11210000 9800700 15017000 951640 25827000 13380000 11741000 9644700 6354400 6050900 6151100 10639000 3 3 2 3 3 3 3 3 3 3 3 4893700 6796100 54862 11788000 10880000 8062500 6566200 2385100 2384300 2800200 5023000 4557000 6360100 540700 11617000 10328000 8315800 6756500 2724000 2702300 2717800 4763800 1 1 1 1 1 1 1 1 1 1 1 5631900 9256700 1466.7 14463000 3194800 2622800 2816000 3623700 3204300 3510700 6186600 5243700 8657000 410940 14210000 3052400 3424800 2888300 3630400 3348600 3433400 5875700 2 2 1 2 2 2 2 2 2 2 2 876570000 724150000 152420000 7295 1382 6798 39310;39311;39312;39313;39314 47232;47233;47234;47235;47236 47232 5 GQKCEFQDAYVLLSEK Unmodified 1913.9193 0.91931342 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 6.33 0.745 1 2 3 2 4 66.772 66.986 3 1.3272E-10 22241 20211116_3435_TMUAki_TMT10x_P_F7 129.88 117.52 19450000 40696000 233320 19629000 41908000 60637000 33888000 56305000 56634000 55180000 43836000 18112000 37894000 2144500 22126000 39996000 59146000 35498000 57432000 56166000 53938000 42683000 7 7 7 7 7 7 7 7 7 7 7 9859700 19291000 190720 9694000 14784000 37512000 19447000 26544000 26201000 26177000 20249000 9181800 17964000 1064100 10983000 14304000 36252000 19691000 27530000 26148000 25581000 19718000 4 4 4 4 4 4 4 4 4 4 4 9590300 21405000 42598 9934700 27125000 23125000 14441000 29762000 30433000 29003000 23586000 8929900 19930000 1080400 11142000 25692000 22894000 15807000 29902000 30017000 28357000 22965000 3 3 3 3 3 3 3 3 3 3 3 3457600000 2175100000 1282400000 7296 613 6799 39315;39316;39317;39318;39319;39320 47237;47238;47239;47240;47241;47242;47243;47244;47245 47240 9 GQKCEFQDAYVLLSEKK Unmodified 2042.0143 0.014276441 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 2 By MS/MS 8 0 1 1 62.058 62.245 4 3.1085E-05 19117 20211116_3436_TMUAki_TMT10x_P_F8 89.846 75.076 3070400 6514400 0 3140900 5634700 14412000 6904000 12772000 10498000 9668300 7951400 2858200 6066000 215870 3611000 5429800 13950000 7047900 12976000 10432000 9570400 7749200 1 1 0 1 1 1 1 1 1 1 1 3070400 6514400 0 3140900 5634700 14412000 6904000 12772000 10498000 9668300 7951400 2858200 6066000 215870 3611000 5429800 13950000 7047900 12976000 10432000 9570400 7749200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1251000000 1251000000 0 7297 613 6800 39321 47246 47246 1 GQLCELSCSTDYR Unmodified 1587.6657 0.66574127 2612 Q99873;Q99873-2;Q99873-3;Q99873-5 PRMT1 Protein arginine N-methyltransferase 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.14 0.639 1 4 2 3 4 43.728 43.666 2;3 1.2789E-93 12222 20211116_3442_TMUAki_TMT10x_S_F4 370.72 354.05 3806600 6085500 29126 9585200 4099700 3611100 2824000 4611600 4862700 3815400 5820900 3544400 5691500 335150 9441900 3899900 4069800 2994300 4614500 4891700 3759100 5585500 6 6 3 6 6 6 6 6 6 6 6 808000 1134700 7357.8 1781700 2252900 1997200 1159700 880240 970220 716440 1129500 752330 1061200 87439 1775200 2132700 1996200 1227600 946430 1001000 706460 1084600 2 2 1 2 2 2 2 2 2 2 2 2998600 4950900 21768 7803400 1846800 1613900 1664300 3731400 3892500 3099000 4691400 2792100 4630300 247710 7666800 1767200 2073500 1766700 3668000 3890800 3052700 4500900 4 4 2 4 4 4 4 4 4 4 4 684300000 185450000 498860000 7298 2612 6801 39322;39323;39324;39325;39326;39327;39328 47247;47248;47249;47250;47251;47252 47251 6 GQLGHGDTK Unmodified 911.44609 0.44609374 3056 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 0 By MS/MS 3 0 1 1 26.726 26.433 3 0.0014121 7686 20211116_3441_TMUAki_TMT10x_S_F3 80.706 58.62 145410 244860 293.14 213460 156370 171540 189270 115440 105840 120490 180330 135390 228370 12482 219350 150780 176070 187680 120360 113960 117470 171650 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 145410 244860 293.14 213460 156370 171540 189270 115440 105840 120490 180330 135390 228370 12482 219350 150780 176070 187680 120360 113960 117470 171650 1 1 1 1 1 1 1 1 1 1 1 4263700 0 4263700 7299 3056 6802 39329 47253 47253 1 GQLNADEISLRPAQSFLMNK Oxidation (M) 2247.1318 0.13176581 1426 P78344 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes yes 0 0 1 1 By MS/MS 7.5 0.5 1 1 2 64.27 64.441 3 9.2299E-09 19992 20211116_3436_TMUAki_TMT10x_P_F8 104.61 102.2 3230600 5917100 49108 5057800 3893200 8642700 4116400 5413500 5408400 5620100 4824900 3008400 5518100 322890 5274100 3741600 8511000 4203800 5673200 5424900 5480300 4672400 1 1 1 1 1 1 1 1 1 1 1 3230600 5917100 49108 5057800 3893200 8642700 4116400 5413500 5408400 5620100 4824900 3008400 5518100 322890 5274100 3741600 8511000 4203800 5673200 5424900 5480300 4672400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 484080000 484080000 0 7300 1426 6803 39330;39331 47254;47255 47255 1916 2 GQLPDYTSPVVLPYSR Unmodified 1790.9203 0.9202997 3234 Q9Y295 DRG1 Developmentally-regulated GTP-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 7.25 0.433 3 1 3 1 65.673 66.055 2;3 3.5678E-45 22415 20211116_3446_TMUAki_TMT10x_S_F7 212.17 186.54 3364200 5699700 8830.5 5460900 3554900 6186300 4114300 3313200 3082000 3686600 4132500 3132300 5317600 272540 5598700 3422100 6192800 4112100 3524800 3217900 3585200 3954000 3 3 1 3 3 3 3 3 3 3 3 3364200 5699700 8830.5 5460900 3554900 6186300 4114300 3313200 3082000 3686600 4132500 3132300 5317600 272540 5598700 3422100 6192800 4112100 3524800 3217900 3585200 3954000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 939790000 939790000 0 7301 3234 6804 39332;39333;39334;39335 47256;47257;47258;47259;47260 47260 5 GQLQEAIEHYR Unmodified 1342.663 0.6629628 180 O15294;O15294-3 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes no 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 42.614 42.726 3 1.1864E-08 11499 20211116_3431_TMUAki_TMT10x_P_F4 151.92 105.22 5743700 9252600 58262 10881000 10092000 9606000 6502100 7165800 7005300 6273300 8351400 5348400 8639700 590850 10966000 9590100 9809700 6798600 7382100 7152500 6163600 8014600 6 6 5 6 6 6 6 6 6 6 6 3369300 5318900 30402 6372800 7836500 7625400 4537200 4076400 3974200 3538400 4753700 3137400 4967000 369690 6445600 7432900 7611300 4757400 4307600 4095400 3477900 4561600 4 4 3 4 4 4 4 4 4 4 4 2374400 3933700 27860 4507700 2255700 1980600 1964800 3089300 3031200 2734900 3597700 2211000 3672700 221160 4520300 2157200 2198500 2041200 3074500 3057100 2685600 3453000 2 2 2 2 2 2 2 2 2 2 2 1057600000 775030000 282600000 7302 180 6805 39336;39337;39338;39339;39340 47261;47262;47263;47264;47265;47266 47263 6 GQLTTDQVFPYPSVLNEEQTQFLK Unmodified 2781.3861 0.38612583 1115 P49748;P49748-2;P49748-3 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 78.834 78.85 3 2.3615E-11 27816 20211116_3446_TMUAki_TMT10x_S_F7 106.35 92.623 1350400 2279400 1291.8 2001300 1917500 1552100 1997100 1051800 1093400 1305100 1825600 1257300 2125900 121100 2054600 1840600 1597600 1993600 1102300 1177900 1264200 1738400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1350400 2279400 1291.8 2001300 1917500 1552100 1997100 1051800 1093400 1305100 1825600 1257300 2125900 121100 2054600 1840600 1597600 1993600 1102300 1177900 1264200 1738400 1 1 1 1 1 1 1 1 1 1 1 1414000000 0 1414000000 7303 1115 6806 39341;39342 47267 47267 1 GQLVPLETVLDMLR Oxidation (M) 1598.8702 0.87017839 474 P00568 AK1 Adenylate kinase isoenzyme 1 yes yes 0 0 1 0 By MS/MS By MS/MS 7 0.707 1 2 1 2 2 80.06 80.063 2;3 0.018424 28270 20211116_3446_TMUAki_TMT10x_S_F7 46.89 20.772 1731700 2655100 0 2284500 2001100 1819900 2095000 1236500 1361100 1583800 1874500 1611800 2476100 79649 2349800 1916800 1869600 2097500 1297000 1435000 1532500 1792300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1731700 2655100 0 2284500 2001100 1819900 2095000 1236500 1361100 1583800 1874500 1611800 2476100 79649 2349800 1916800 1869600 2097500 1297000 1435000 1532500 1792300 1 1 0 1 1 1 1 1 1 1 1 668030000 145960000 522070000 7304 474 6807 39343;39344;39345;39346 47268;47269 47269 371 2 GQMDQPANMPDSILLEAK 2 Oxidation (M) 1988.9183 0.91832715 2076 Q7Z3K3;Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-6;Q7Z3K3-3 POGZ Pogo transposable element with ZNF domain yes no 0 0 2 0 By matching By MS/MS 3.5 0.5 1 1 1 1 57.529 57.377 3 0.0083368 17875 20211116_3442_TMUAki_TMT10x_S_F4 51.942 35.448 1677000 3056600 0 3020900 1502400 1551300 1471400 2710800 2334100 2438400 2647600 1561200 2852000 114630 3062400 1438300 1697100 1520800 2689500 2347900 2392700 2544300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1677000 3056600 0 3020900 1502400 1551300 1471400 2710800 2334100 2438400 2647600 1561200 2852000 114630 3062400 1438300 1697100 1520800 2689500 2347900 2392700 2544300 1 1 0 1 1 1 1 1 1 1 1 470370000 156220000 314150000 7305 2076 6808 39347;39348 47270 47270 2579;2580 1 GQMQKPFEDASFALR Oxidation (M) 1739.8301 0.83010449 1642 Q13526 PIN1 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 yes yes 0 0 1 1 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 49.926 50.219 3 0.0004089 14676 20211116_3433_TMUAki_TMT10x_P_F5 79.317 59.211 97503000 137510000 1511.8 172560000 96760000 96132000 94789000 95708000 99965000 84712000 111560000 90768000 128440000 6021900 172420000 92595000 102640000 96412000 97001000 101880000 83187000 107260000 7 7 1 7 7 7 7 7 7 7 7 21006000 32504000 0 34217000 36389000 46293000 24766000 29035000 28378000 25184000 26536000 19557000 30336000 1762200 34966000 34587000 46027000 25841000 30276000 28646000 24755000 25655000 3 3 0 3 3 3 3 3 3 3 3 76497000 105000000 1511.8 138340000 60371000 49840000 70022000 66673000 71587000 59527000 85021000 71212000 98104000 4259600 137450000 58008000 56611000 70571000 66725000 73235000 58432000 81601000 4 4 1 4 4 4 4 4 4 4 4 8287100000 4317600000 3969500000 7306 1642 6809 39349;39350;39351;39352;39353;39354 47271;47272;47273;47274;47275 47271 2208 5 GQMQKPFEDASFALR Unmodified 1723.8352 0.83518986 1642 Q13526 PIN1 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 yes yes 0 0 0 1 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 55.762 56.167 3 6.6169E-15 16111 20211116_3447_TMUAki_TMT10x_S_F8 157.91 133.35 43839000 71612000 89687 79487000 53248000 46108000 47593000 27182000 20491000 28742000 47758000 40817000 66851000 3560900 80034000 50901000 48606000 47732000 28639000 23000000 28006000 45227000 3 3 2 3 3 3 3 3 3 3 3 17218000 27739000 0 30656000 25450000 27244000 24388000 9841300 7337100 10412000 17697000 16030000 25895000 1253800 31017000 24357000 27574000 24266000 10901000 8578000 10146000 16751000 1 1 0 1 1 1 1 1 1 1 1 26621000 43872000 89687 48831000 27798000 18864000 23204000 17341000 13154000 18330000 30062000 24787000 40956000 2307100 49018000 26544000 21032000 23466000 17738000 14422000 17861000 28476000 2 2 2 2 2 2 2 2 2 2 2 3192900000 1307300000 1885600000 7307 1642 6809 39355;39356;39357 47276;47277;47278 47278 3 GQNDLMGTAEDFADQFLR Oxidation (M) 2042.9004 0.90036889 178 O15260;O15260-3;O15260-2 SURF4 Surfeit locus protein 4 yes no 0 0 1 0 By MS/MS By MS/MS 2.78 0.916 1 2 4 2 3 6 78.642 78.588 2;3 7.314E-10 27167 20211116_3429_TMUAki_TMT10x_P_F2 116.71 102.02 13012000 20484000 185490 18965000 11799000 18967000 14801000 10413000 10318000 12002000 14558000 12115000 19108000 1056700 19455000 11388000 19130000 14717000 11067000 10843000 11656000 13912000 4 4 2 4 4 4 4 4 4 4 4 10493000 16374000 77738 14928000 8974600 16391000 11590000 8575000 8406100 9687300 11466000 9768900 15273000 743100 15353000 8664100 16432000 11521000 9146300 8799600 9415300 10966000 3 3 1 3 3 3 3 3 3 3 3 2519400 4109500 107760 4036800 2824000 2575600 3210500 1838400 1911900 2314500 3091900 2346600 3834300 313570 4101500 2724000 2697400 3196100 1920600 2043700 2240900 2946100 1 1 1 1 1 1 1 1 1 1 1 3224700000 1377100000 1847600000 7308 178 6810 39358;39359;39360;39361;39362;39363;39364;39365;39366 47279;47280;47281;47282;47283;47284 47279 133 6 GQNDLMGTAEDFADQFLR Unmodified 2026.9055 0.90545427 178 O15260;O15260-3;O15260-2 SURF4 Surfeit locus protein 4 yes no 0 0 0 0 By MS/MS 3 1 1 1 2 80.971 80.979 3 3.6166E-08 28143 20211116_3429_TMUAki_TMT10x_P_F2 105.79 93.426 1055200 2088500 21908 1862900 1180300 1677400 1295200 913730 793580 1010600 1480700 982640 1947900 109650 1913600 1136000 1703100 1292200 970460 853660 983010 1407100 1 1 1 1 1 1 1 1 1 1 1 1055200 2088500 21908 1862900 1180300 1677400 1295200 913730 793580 1010600 1480700 982640 1947900 109650 1913600 1136000 1703100 1292200 970460 853660 983010 1407100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 625840000 625840000 0 7309 178 6810 39367;39368 47285;47286 47285 2 GQNLLLTNLQTIQGILER Unmodified 2023.1426 0.1425885 641 P12270 TPR Nucleoprotein TPR yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 81.257 81.227 3 1.4837E-79 29721 20211116_3441_TMUAki_TMT10x_S_F3 297.73 272.38 6439200 10082000 51759 9352300 6609600 7282900 6699300 3804900 3691900 4238300 6435400 5994900 9404600 449380 9561400 6334200 7468800 6697600 4057100 3984800 4121400 6123100 4 4 2 4 4 4 4 4 4 4 4 3677600 5401300 13991 5099200 3072200 4905700 3230800 1996000 1887600 2279300 3534600 3423300 5038800 176380 5220500 2941900 4944100 3227200 2184700 2037500 2214400 3358700 2 2 1 2 2 2 2 2 2 2 2 2761600 4680500 37768 4253100 3537400 2377200 3468500 1808900 1804300 1959000 2900800 2571600 4365800 273000 4341000 3392200 2524700 3470400 1872300 1947300 1907100 2764300 2 2 1 2 2 2 2 2 2 2 2 2703400000 1143500000 1559900000 7310 641 6811 39369;39370;39371;39372 47287;47288;47289;47290 47290 4 GQPAIIDGELYNEVK Unmodified 1644.8359 0.83590137 3226 Q9Y266 NUDC Nuclear migration protein nudC yes yes 0 0 0 0 By MS/MS By MS/MS 2.75 0.829 2 1 1 3 1 62.873 62.659 3 1.0656E-06 20768 20211116_3429_TMUAki_TMT10x_P_F2 97.767 83.757 23353000 36118000 334090 40208000 25949000 31083000 24295000 26578000 26404000 28345000 29951000 21744000 33717000 2021800 40594000 24843000 32127000 24795000 27303000 26896000 27610000 28783000 5 5 3 5 5 5 5 5 5 5 5 9556900 13809000 81514 15295000 12393000 18366000 11960000 9965200 10334000 10836000 11319000 8897700 12890000 747960 15545000 11866000 18332000 12104000 10582000 10619000 10547000 10889000 2 2 1 2 2 2 2 2 2 2 2 13796000 22310000 252570 24913000 13556000 12717000 12334000 16613000 16071000 17509000 18632000 12847000 20827000 1273800 25049000 12976000 13795000 12691000 16721000 16277000 17064000 17894000 3 3 2 3 3 3 3 3 3 3 3 1463600000 773200000 690360000 7311 3226 6812 39373;39374;39375;39376 47291;47292;47293;47294;47295;47296;47297 47291 7 GQPDVVVKEDEEYK Unmodified 1633.7835 0.78353145 795 P24752 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes yes 0 0 0 1 By MS/MS 3 0 1 1 43.044 42.717 3 1.32E-09 14149 20211116_3441_TMUAki_TMT10x_S_F3 111.06 78.458 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7312 795 6813 39377 47298 47298 1 GQPFDVGPR Unmodified 971.48248 0.48247924 826 P27361;P27361-2;P27361-3 MAPK3 Mitogen-activated protein kinase 3 yes no 0 0 0 0 By MS/MS By MS/MS 4 1 1 1 1 1 38.807 38.939 2 0.014161 9103 20211116_3444_TMUAki_TMT10x_S_F5 63.227 44.133 665670 1075500 2603.8 1332500 608910 515220 562160 971190 1055600 798290 1047700 619820 1004500 56820 1329000 582830 585530 587940 959260 1052000 786780 1010900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 665670 1075500 2603.8 1332500 608910 515220 562160 971190 1055600 798290 1047700 619820 1004500 56820 1329000 582830 585530 587940 959260 1052000 786780 1010900 1 1 1 1 1 1 1 1 1 1 1 32268000 0 32268000 7313 826 6814 39378;39379 47299;47300 47300 2 GQPIYIQFSNHK Unmodified 1430.7306 0.73064844 818 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 47.185 47.173 3 3.5223E-06 13622 20211116_3442_TMUAki_TMT10x_S_F4 110.98 88.06 18186000 27317000 635620 23581000 25646000 28511000 19999000 28375000 30128000 22306000 30146000 16938000 25476000 2204600 24394000 24487000 28738000 20895000 28675000 30208000 22035000 29080000 4 4 4 4 4 4 4 4 4 4 4 10772000 13861000 501230 11441000 17175000 20483000 12502000 13787000 14777000 11048000 17360000 10033000 12925000 1449900 11977000 16381000 20158000 12996000 14274000 15025000 10903000 16667000 2 2 2 2 2 2 2 2 2 2 2 7414800 13456000 134390 12140000 8470800 8028100 7497000 14587000 15351000 11258000 12785000 6904900 12551000 754780 12416000 8105900 8579600 7898600 14401000 15182000 11132000 12413000 2 2 2 2 2 2 2 2 2 2 2 1075600000 592480000 483140000 7314 818 6815 39380;39381;39382;39383 47301;47302;47303;47304 47304 4 GQPLGPAGVQVSLR Unmodified 1377.7728 0.7728476 1422 Q5JPE7;Q15155;P69849;Q5JPE7-2 NOMO2;NOMO1;NOMO3 Nodal modulator 2;Nodal modulator 1;Nodal modulator 3 yes no 0 0 0 0 By MS/MS 3.33 3.3 2 1 3 50.054 50.054 2;3 1.096E-25 14219 20211116_3436_TMUAki_TMT10x_P_F8 188.91 148.64 948430 1460100 0 1640000 1696500 2182400 1189100 1162800 1217800 1019500 1291700 882920 1363100 69695 1668400 1612600 2166900 1233600 1229400 1240300 1001600 1243800 1 1 0 1 1 1 1 1 1 1 1 948430 1460100 0 1640000 1696500 2182400 1189100 1162800 1217800 1019500 1291700 882920 1363100 69695 1668400 1612600 2166900 1233600 1229400 1240300 1001600 1243800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 134580000 134580000 0 7315 1422 6816 39384;39385;39386 47305;47306;47307 47307 3 GQPLPDHLQMAVQGK Oxidation (M) 1633.8246 0.82462518 1154 P51532-5;P51532-2;P51532-3;P51532-4;P51532 SMARCA4 Transcription activator BRG1 yes no 0 0 1 0 By MS/MS By MS/MS 6 0.632 1 3 1 3 2 41.759 41.981 3 1.0953E-06 10460 20211116_3445_TMUAki_TMT10x_S_F6 107.74 94.056 1989500 3156000 45816 4038200 5519100 5396400 2878500 4359500 4416100 3500800 3505100 1852500 2948200 228620 4077600 5226500 5390400 3105400 4459000 4393000 3454500 3409500 3 3 1 3 3 3 3 3 3 3 3 1486300 2387300 45816 3036800 5049800 4994700 2511200 3278700 3340100 2573500 2625400 1384000 2230000 194580 3081500 4779600 4929000 2705600 3399100 3336300 2542500 2554800 2 2 1 2 2 2 2 2 2 2 2 503220 768710 0 1001400 469270 401640 367320 1080700 1076000 927300 879710 468490 718150 34040 996150 446930 461420 399850 1059900 1056700 911970 854700 1 1 0 1 1 1 1 1 1 1 1 620390000 388500000 231890000 7316 1154 6817 39387;39388;39389;39390;39391 47308;47309;47310;47311;47312 47311 1538 5 GQPLPDHLQMAVQGK Unmodified 1617.8297 0.82971055 1154 P51532-5;P51532-2;P51532-3;P51532-4;P51532 SMARCA4 Transcription activator BRG1 yes no 0 0 0 0 By MS/MS 7 0 1 1 46.943 47.508 3 2.2942E-06 14329 20211116_3435_TMUAki_TMT10x_P_F7 87.566 70.881 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7317 1154 6817 39392 47313 47313 1 GQPSNKEDVDDLVSQLR Unmodified 1898.9334 0.93338358 641 P12270 TPR Nucleoprotein TPR yes yes 0 0 0 1 By MS/MS By MS/MS 4.75 0.829 2 1 1 1 3 55.2 55.277 3 6.4902E-16 15657 20211116_3444_TMUAki_TMT10x_S_F5 143.39 107.73 13872000 23014000 157620 25325000 20362000 25876000 15656000 19688000 20377000 19080000 19479000 12917000 21483000 1354400 25680000 19413000 26188000 16273000 20312000 20491000 18660000 18818000 4 4 3 4 4 4 4 4 4 4 4 8462100 13397000 76216 14747000 14519000 20688000 11587000 11041000 11668000 10601000 11030000 7879600 12506000 857430 15038000 13852000 20492000 11909000 11700000 11844000 10372000 10660000 2 2 2 2 2 2 2 2 2 2 2 5409900 9616500 81400 10578000 5843400 5188300 4068600 8646800 8708400 8478900 8448900 5037500 8976800 496940 10643000 5561100 5695600 4363400 8611900 8647100 8287900 8158400 2 2 1 2 2 2 2 2 2 2 2 1703600000 734180000 969410000 7318 641 6818 39393;39394;39395;39396 47314;47315;47316;47317;47318 47317 5 GQQASPFVLR Unmodified 1101.5931 0.59309232 2672 Q9BUE0 MED18 Mediator of RNA polymerase II transcription subunit 18 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 43.176 43.186 2 1.2906E-08 11399 20211116_3436_TMUAki_TMT10x_P_F8 129.63 87.994 715980 1311100 6506.4 1473400 628770 621900 563480 1221600 1268600 988000 1188500 666700 1224000 64202 1478900 601640 699550 596810 1204800 1256900 974550 1149000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 715980 1311100 6506.4 1473400 628770 621900 563480 1221600 1268600 988000 1188500 666700 1224000 64202 1478900 601640 699550 596810 1204800 1256900 974550 1149000 1 1 1 1 1 1 1 1 1 1 1 33565000 0 33565000 7319 2672 6819 39397;39398 47319;47320 47319 2 GQQYESMDHIQAELSAR Oxidation (M) 1977.8851 0.88505318 2204 Q8N6R0;Q8N6R0-3;Q8N6R0-4;Q8N6R0-1 METTL13 Methyltransferase-like protein 13 yes no 0 0 1 0 By MS/MS 3 0 2 2 36.428 36.435 3 3.6582E-05 10521 20211116_3430_TMUAki_TMT10x_P_F3 83.894 76.663 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7320 2204 6820 39399;39400 47321;47322 47321 2629 2 GQRPDFTDAIILR Unmodified 1500.8049 0.80487601 1233 P55039 DRG2 Developmentally-regulated GTP-binding protein 2 yes yes 0 0 0 1 By MS/MS 6 0 1 1 52.54 52.659 3 1.2219E-05 14894 20211116_3445_TMUAki_TMT10x_S_F6 101.62 79.091 1745900 3007600 71106 3260700 2034900 1711300 1950500 2736100 2560300 2375600 2900600 1626100 2807400 215060 3285400 1953300 1862000 2001700 2719300 2590000 2335000 2787600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1745900 3007600 71106 3260700 2034900 1711300 1950500 2736100 2560300 2375600 2900600 1626100 2807400 215060 3285400 1953300 1862000 2001700 2719300 2590000 2335000 2787600 1 1 1 1 1 1 1 1 1 1 1 256580000 0 256580000 7321 1233 6821 39401 47323 47323 1 GQRPDFTDAIILRK Unmodified 1628.8998 0.89983903 1233 P55039 DRG2 Developmentally-regulated GTP-binding protein 2 yes yes 0 0 0 2 By MS/MS 1 0 1 1 49.941 49.679 4 2.8535E-06 15959 20211116_3439_TMUAki_TMT10x_S_F1 113.69 82.255 859560 1414200 0 1468100 880140 758530 780830 1193500 1176800 1002100 1164100 800310 1319800 68760 1483300 841240 826280 809480 1185700 1179500 986550 1123400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 859560 1414200 0 1468100 880140 758530 780830 1193500 1176800 1002100 1164100 800310 1319800 68760 1483300 841240 826280 809480 1185700 1179500 986550 1123400 1 1 0 1 1 1 1 1 1 1 1 136290000 0 136290000 7322 1233 6822 39402 47324 47324 1 GQSEDPGSLLSLFR Unmodified 1504.7522 0.75217174 551 P08195;P08195-3;P08195-2;P08195-4 SLC3A2 4F2 cell-surface antigen heavy chain yes no 0 0 0 0 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 77.885 77.892 2 4.4628E-33 24890 20211116_3434_TMUAki_TMT10x_P_F6 229.75 193.05 17838000 29196000 40510 26015000 25748000 38391000 28836000 31046000 30775000 31223000 28490000 16609000 27231000 1627400 26949000 24769000 38181000 29148000 31942000 31142000 30486000 27554000 2 2 2 2 2 2 2 2 2 2 2 9311600 14264000 4412.5 13404000 11710000 25786000 14885000 15570000 15569000 15056000 14496000 8670000 13306000 809690 13920000 11308000 25276000 14954000 16331000 15770000 14725000 14017000 1 1 1 1 1 1 1 1 1 1 1 8526500 14933000 36097 12611000 14038000 12604000 13951000 15476000 15206000 16167000 13994000 7939300 13925000 817750 13029000 13461000 12905000 14194000 15610000 15372000 15761000 13537000 1 1 1 1 1 1 1 1 1 1 1 3347200000 1348500000 1998700000 7323 551 6823 39403;39404;39405;39406;39407 47325;47326;47327;47328 47326 4 GQSLGYAFAEFQEHEHALK Unmodified 2161.0229 0.022867292 2983 Q9NW13;Q9NW13-2 RBM28 RNA-binding protein 28 yes no 0 0 0 0 By MS/MS By MS/MS 5.29 1.03 2 2 2 1 3 4 61.467 61.574 4 7.6565E-18 18595 20211116_3445_TMUAki_TMT10x_S_F6 153.06 143.4 42874000 66961000 35227 71437000 57256000 60971000 49458000 50416000 47676000 53724000 56658000 39916000 62498000 2946100 72405000 54678000 62522000 50520000 51891000 48899000 52334000 54378000 8 8 2 8 8 8 8 8 8 8 8 16843000 26735000 0 29181000 22124000 36248000 20389000 21549000 19427000 22292000 21984000 15682000 24956000 961410 29702000 21163000 36161000 20742000 22673000 19896000 21741000 21128000 3 3 0 3 3 3 3 3 3 3 3 26031000 40226000 35227 42257000 35132000 24723000 29069000 28867000 28250000 31433000 34674000 24235000 37542000 1984700 42703000 33514000 26361000 29778000 29217000 29003000 30593000 33250000 5 5 2 5 5 5 5 5 5 5 5 5476300000 2586200000 2890100000 7324 2983 6824 39408;39409;39410;39411;39412;39413;39414 47329;47330;47331;47332;47333;47334;47335;47336 47336 8 GQSSWGTGESFR Unmodified 1297.5687 0.56872807 1505 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 0 By MS/MS 3 0 1 1 36.19 36.198 2 0.094662 10457 20211116_3430_TMUAki_TMT10x_P_F3 42.976 9.5311 47123 72819 0 102950 142000 79266 77254 54534 32828 47240 65190 43854 68060 2380.3 102540 134340 81656 80373 56477 36490 46438 61884 1 1 0 1 1 1 1 1 1 1 1 47123 72819 0 102950 142000 79266 77254 54534 32828 47240 65190 43854 68060 2380.3 102540 134340 81656 80373 56477 36490 46438 61884 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5023900 5023900 0 7325 1505 6825 39415 47337 47337 1 GQSTGKGPPQSPVFEGVYNNSR Unmodified 2305.1087 0.10872219 2315 Q8WWM7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7-3;Q8WWM7-7 ATXN2L Ataxin-2-like protein yes no 0 0 0 1 By MS/MS 8 0 1 1 43.916 44.091 3 1.4627E-55 11731 20211116_3436_TMUAki_TMT10x_P_F8 226.24 209.94 778570 1611000 0 994910 2167200 3283300 1607600 2346000 2218300 1785500 1552100 724920 1500900 82325 1092700 2063900 3182600 1678900 2415700 2206400 1766900 1517800 1 1 0 1 1 1 1 1 1 1 1 778570 1611000 0 994910 2167200 3283300 1607600 2346000 2218300 1785500 1552100 724920 1500900 82325 1092700 2063900 3182600 1678900 2415700 2206400 1766900 1517800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 267070000 267070000 0 7326 2315 6826 39416 47338 47338 1 GQTEHDEGMLEYLEDIIGCGR Oxidation (M) 2437.0526 0.052588795 2946 Q9NTJ3;Q9NTJ3-2 SMC4 Structural maintenance of chromosomes protein 4 yes no 0 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 73.555 73.5 3 7.7199E-14 23761 20211116_3428_TMUAki_TMT10x_P_F1 123.19 118.57 6204400 11113000 160900 9410800 8166800 8628700 7546500 7447000 7714700 7552800 8280500 5777800 10364000 661770 9709200 7822900 8812100 7692400 7634400 7861100 7372100 7970400 4 4 3 4 4 4 4 4 4 4 4 1574600 2520500 0 1953000 1460200 2856100 1576800 1637100 1627800 1730800 1744900 1465900 2349800 98890 2046000 1401100 2826500 1594900 1728800 1657900 1686500 1679600 1 1 0 1 1 1 1 1 1 1 1 4629800 8593000 160900 7457800 6706600 5772700 5969700 5809900 6086900 5822000 6535500 4312000 8013900 562880 7663200 6421800 5985600 6097500 5905600 6203200 5685600 6290700 3 3 3 3 3 3 3 3 3 3 3 1163700000 548710000 614960000 7327 2946 6827 39417;39418 47339;47340;47341;47342 47339 3036 4 GQTHTLEDFQR Unmodified 1330.6266 0.6265773 2598 Q99714;Q99714-2 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 32.021 31.874 3 4.1679E-09 9746 20211116_3441_TMUAki_TMT10x_S_F3 157.47 134.55 1193500 1952200 30575 1975200 2730300 2329200 1538500 1339100 1595300 1244000 1747100 1111500 1821700 148970 2018700 2589800 2328700 1624600 1408600 1625800 1218900 1680600 3 3 3 3 3 3 3 3 3 3 3 973810 1613100 25515 1596200 2490000 2129900 1301800 1095000 1273500 1003800 1417100 906910 1505100 125750 1637600 2359200 2113700 1381700 1162800 1301900 984140 1362600 2 2 2 2 2 2 2 2 2 2 2 219680 339110 5060 378940 240330 199260 236690 244100 321770 240190 329960 204580 316580 23218 381080 230650 215080 242900 245810 323910 234740 318040 1 1 1 1 1 1 1 1 1 1 1 123610000 85001000 38606000 7328 2598 6828 39419;39420;39421 47343;47344;47345 47345 3 GQTLVVQFTVK Unmodified 1218.6972 0.69722304 832 P27797 CALR Calreticulin yes yes 0 0 0 0 By MS/MS 2.33 0.471 2 1 3 62.373 62.069 2;3 4.822E-05 22086 20211116_3441_TMUAki_TMT10x_S_F3 101.93 71.359 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7329 832 6829 39422;39423;39424 47346;47347;47348 47348 3 GQTTLPFRPVTQEEDDDQR Unmodified 2231.0455 0.045453228 2554 Q96SB8;Q96SB8-2 SMC6 Structural maintenance of chromosomes protein 6 yes no 0 0 0 1 By MS/MS 3 0 1 1 42.206 42.26 3 1.0937E-31 12864 20211116_3430_TMUAki_TMT10x_P_F3 192.18 175.25 179210 309540 9189 375750 516580 534100 314300 301930 326270 263540 327950 166930 289080 28146 381020 490790 529120 329750 317550 331460 258970 316310 1 1 1 1 1 1 1 1 1 1 1 179210 309540 9189 375750 516580 534100 314300 301930 326270 263540 327950 166930 289080 28146 381020 490790 529120 329750 317550 331460 258970 316310 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 53130000 53130000 0 7330 2554 6830 39425 47349 47349 1 GQVCLPVISAENWKPATK Unmodified 1997.0404 0.040431612 1415 P68036;P68036-2;P68036-3;A0A1B0GUS4 UBE2L3 Ubiquitin-conjugating enzyme E2 L3 yes no 0 0 0 1 By MS/MS By MS/MS 2.14 0.639 1 4 2 4 3 65.655 65.385 3;4 2.9517E-31 20548 20211116_3440_TMUAki_TMT10x_S_F2 188.6 172.5 61542000 101320000 537990 109360000 84178000 90487000 86335000 39038000 34082000 43901000 70648000 57304000 94570000 5708100 110720000 80787000 92190000 85843000 42433000 38257000 42676000 67019000 12 12 6 12 12 12 12 12 12 12 12 46133000 75147000 477120 79976000 66601000 78421000 71184000 29373000 25214000 31756000 52419000 42957000 70138000 4502200 81225000 64001000 78884000 70543000 32411000 28628000 30916000 49725000 8 8 5 8 8 8 8 8 8 8 8 15409000 26170000 60871 29384000 17577000 12066000 15151000 9665200 8868200 12145000 18228000 14347000 24432000 1205900 29491000 16786000 13306000 15300000 10022000 9628900 11759000 17294000 4 4 1 4 4 4 4 4 4 4 4 6778700000 4344000000 2434700000 7331 1415 6831 39426;39427;39428;39429;39430;39431;39432 47350;47351;47352;47353;47354;47355;47356;47357;47358;47359;47360;47361 47361 12 GQVCVMIHSGSR Oxidation (M) 1345.6231 0.6230886 3285 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog yes yes 0 0 1 0 By MS/MS By MS/MS 4 2.3 2 2 1 1 2 1 1 1 5 6 29.313 29.379 3 0.00039404 7542 20211116_3439_TMUAki_TMT10x_S_F1 81.239 69.192 601030 939630 14832 922620 825530 1060100 702310 605370 623640 867370 808300 559730 876710 63159 944480 789360 1061200 716390 646290 644440 836320 774020 10 10 4 10 10 10 10 10 10 10 10 511620 793590 12272 758200 723170 970740 601970 514710 515220 751770 684300 476460 740370 55686 779170 691110 965570 614250 553430 533940 724450 654880 5 5 3 5 5 5 5 5 5 5 5 89408 146040 2559.5 164420 102360 89329 100350 90662 108430 115600 124000 83266 136340 7473.6 165310 98254 95664 102140 92858 110500 111880 119130 5 5 1 5 5 5 5 5 5 5 5 43053000 31628000 11425000 7332 3285 6832 39433;39434;39435;39436;39437;39438;39439;39440;39441;39442;39443 47362;47363;47364;47365;47366;47367;47368;47369;47370;47371;47372 47368 3253 11 GQVCVMIHSGSR Unmodified 1329.6282 0.62817398 3285 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog yes yes 0 0 0 0 By MS/MS By MS/MS 6.12 1.69 1 1 2 2 2 5 3 32.356 32.586 3 0.00018285 8970 20211116_3430_TMUAki_TMT10x_P_F3 85.554 67.242 335380 536890 0 495360 427970 460890 344060 286140 318510 301150 411620 312200 500820 16817 507760 407670 467720 352590 300200 328450 293500 394190 6 6 0 6 6 6 6 6 6 6 6 201840 309930 0 282990 291890 336440 203560 152890 171120 167490 230670 187880 289090 9559.4 291400 277240 335320 210090 165150 177620 162980 220680 3 3 0 3 3 3 3 3 3 3 3 133540 226960 0 212360 136080 124450 140510 133260 147380 133660 180940 124320 211720 7257.4 216360 130430 132400 142500 135050 150830 130520 173510 3 3 0 3 3 3 3 3 3 3 3 41285000 36528000 4756300 7333 3285 6832 39444;39445;39446;39447;39448;39449;39450;39451 47373;47374;47375;47376;47377;47378 47373 6 GQVEYLLK Unmodified 948.52803 0.52803245 1035 P45973 CBX5 Chromobox protein homolog 5 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 2 2 54.053 54.212 2 0.00056581 15240 20211116_3444_TMUAki_TMT10x_S_F5 138.1 83.689 29035000 47051000 167610 53095000 46592000 43401000 31677000 43666000 47361000 38042000 45659000 27035000 43926000 2755900 53594000 44307000 44818000 33397000 44214000 47435000 37385000 44098000 5 5 3 5 5 5 5 5 5 5 5 9663400 14828000 73308 16902000 26909000 25646000 13259000 14408000 15175000 12716000 14681000 8998100 13844000 1111000 17227000 25463000 25335000 14222000 15165000 15337000 12489000 14178000 2 2 2 2 2 2 2 2 2 2 2 19372000 32223000 94305 36193000 19683000 17755000 18418000 29258000 32185000 25326000 30978000 18037000 30082000 1644900 36367000 18843000 19483000 19175000 29049000 32098000 24897000 29921000 3 3 1 3 3 3 3 3 3 3 3 1824400000 674860000 1149500000 7334 1035 6833 39452;39453;39454;39455 47379;47380;47381;47382;47383;47384 47382 6 GQVFDVGPR Unmodified 973.49813 0.49812931 845 P28482;P28482-2 MAPK1 Mitogen-activated protein kinase 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 41.761 41.902 2 0.0004294 10307 20211116_3444_TMUAki_TMT10x_S_F5 88.136 61.913 3428200 4993200 65341 5848000 7256100 7327900 4103700 4223300 4292900 3547900 4739200 3192500 4662400 398730 5927700 6882200 7304100 4333200 4430400 4374800 3492900 4558000 1 1 1 1 1 1 1 1 1 1 1 3428200 4993200 65341 5848000 7256100 7327900 4103700 4223300 4292900 3547900 4739200 3192500 4662400 398730 5927700 6882200 7304100 4333200 4430400 4374800 3492900 4558000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 155600000 104740000 50862000 7335 845 6834 39456;39457;39458 47385;47386 47386 2 GQVLNIQMR Oxidation (M) 1073.5652 0.56516301 509 P05455 SSB Lupus La protein yes yes 0 0 1 0 By MS/MS 7 0 1 1 33.396 33.804 2 0.090476 8939 20211116_3435_TMUAki_TMT10x_P_F7 53.17 38.653 102720 150690 0 207640 204160 174530 130310 105070 80420 94292 122150 95614 140820 6098.9 207310 193650 178280 134500 110010 85477 92534 116540 1 1 0 1 1 1 1 1 1 1 1 102720 150690 0 207640 204160 174530 130310 105070 80420 94292 122150 95614 140820 6098.9 207310 193650 178280 134500 110010 85477 92534 116540 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6524800 6524800 0 7336 509 6835 39459 47387 47387 413 1 GQVLNSDELQELYEGLR Unmodified 1961.9694 0.96943474 109 O00764;O00764-2 PDXK Pyridoxal kinase yes no 0 0 0 0 By MS/MS 4 0 1 1 77.855 77.806 2 0.00020284 26194 20211116_3442_TMUAki_TMT10x_S_F4 80.706 59.928 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7337 109 6836 39460 47388 47388 1 GQVPPLVTTNFLVK Unmodified 1511.8712 0.87116466 1214 P53992 SEC24C Protein transport protein Sec24C yes yes 0 0 0 0 By MS/MS By MS/MS 2.75 0.433 2 6 4 4 74.718 74.567 2;3 6.0232E-20 27085 20211116_3441_TMUAki_TMT10x_S_F3 155.08 137.35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7338 1214 6837 39461;39462;39463;39464;39465;39466;39467;39468 47389;47390;47391;47392;47393;47394;47395;47396 47395 8 GQVYILGR Unmodified 904.51305 0.51305109 476 P00966 ASS1 Argininosuccinate synthase yes yes 0 0 0 0 By MS/MS By MS/MS 4.86 3.09 2 1 2 2 3 4 43.643 43.734 2 0.00079637 11512 20211116_3436_TMUAki_TMT10x_P_F8 133.81 108.81 15020000 22828000 112870 25065000 26324000 24981000 17055000 20141000 21629000 18279000 21899000 13985000 21309000 1353700 25411000 25004000 25345000 17925000 20666000 21813000 17929000 21117000 8 8 3 8 8 8 8 8 8 8 8 6810600 10067000 99708 10865000 17664000 17571000 9222200 9274700 9964400 8355700 9900000 6341700 9396500 758150 11128000 16728000 17300000 9818900 9821100 10102000 8198500 9552200 3 3 2 3 3 3 3 3 3 3 3 8209200 12761000 13167 14201000 8659600 7409400 7832300 10866000 11664000 9923400 11999000 7642900 11913000 595510 14284000 8276500 8044800 8106500 10845000 11711000 9730500 11565000 5 5 1 5 5 5 5 5 5 5 5 928600000 542490000 386110000 7339 476 6838 39469;39470;39471;39472;39473;39474;39475 47397;47398;47399;47400;47401;47402;47403 47398 7 GQYFGELALVTNKPR Unmodified 1691.8995 0.89950468 886;660 P31323;P13861;P13861-2 PRKAR2B;PRKAR2A cAMP-dependent protein kinase type II-beta regulatory subunit;cAMP-dependent protein kinase type II-alpha regulatory subunit no no 0 0 0 1 By MS/MS By MS/MS 3.2 2.48 1 2 1 1 3 2 61.208 61.034 3 2.1235E-33 20061 20211116_3429_TMUAki_TMT10x_P_F2 220.59 194.76 55184000 88514000 651550 89077000 64763000 80288000 60259000 66273000 60955000 63612000 71176000 51382000 82595000 4730400 90702000 61986000 82019000 61381000 68009000 62343000 62236000 68345000 9 9 5 9 9 9 9 9 9 9 9 23299000 34735000 277010 37541000 28550000 47537000 28558000 27279000 25200000 26836000 28568000 21694000 32422000 2086500 38250000 27381000 47356000 28864000 28744000 25903000 26228000 27454000 4 4 2 4 4 4 4 4 4 4 4 31885000 53779000 374540 51536000 36213000 32751000 31701000 38994000 35755000 36776000 42608000 29688000 50173000 2643900 52453000 34605000 34663000 32517000 39265000 36440000 36008000 40890000 5 5 3 5 5 5 5 5 5 5 5 5006000000 2834200000 2171800000 7340 886;660 6839 39476;39477;39478;39479;39480 47404;47405;47406;47407;47408;47409;47410;47411;47412 47404 9 GQYISPFHDIPIYADK Unmodified 1862.9203 0.9202997 1777 Q15181 PPA1 Inorganic pyrophosphatase yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 65.174 65.144 3 3.6991E-06 19747 20211116_3447_TMUAki_TMT10x_S_F8 100.41 79.159 20768000 34122000 424770 35468000 22047000 24651000 22490000 14505000 18318000 17528000 23540000 19340000 31844000 2135600 35926000 21176000 25552000 22661000 15350000 19003000 16994000 22547000 4 4 4 4 4 4 4 4 4 4 4 6741800 10657000 79289 10963000 6662100 10979000 6895100 4434800 5286500 5648700 6918100 6277900 9945400 631720 11163000 6398600 11037000 6932100 4875600 5506400 5466800 6623100 1 1 1 1 1 1 1 1 1 1 1 14026000 23465000 345480 24504000 15385000 13672000 15595000 10070000 13031000 11879000 16622000 13062000 21899000 1503800 24763000 14778000 14516000 15729000 10474000 13496000 11527000 15923000 3 3 3 3 3 3 3 3 3 3 3 2495300000 1166400000 1329000000 7341 1777 6840 39481;39482;39483;39484 47413;47414;47415;47416 47416 4 GRAEAAAGAAGILLR Unmodified 1395.7946 0.79464568 3071 Q9P2W1;Q9P2W1-2 PSMC3IP Homologous-pairing protein 2 homolog yes no 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 43.606 43.603 3 1.6747E-09 11379 20211116_3428_TMUAki_TMT10x_P_F1 126.07 93.746 12082000 19560000 524140 21759000 18092000 20353000 12920000 19661000 17746000 17250000 18187000 11253000 18259000 1570700 22022000 17249000 20805000 13525000 19953000 17858000 16947000 17531000 7 7 6 7 7 7 7 7 7 7 7 6069700 9496900 215640 10321000 12541000 14657000 8369500 10108000 9527300 8713600 8950800 5653100 8864700 794820 10535000 11933000 14562000 8743500 10465000 9621200 8567600 8652400 3 3 3 3 3 3 3 3 3 3 3 6011900 10063000 308500 11438000 5551500 5695500 4550700 9553000 8219000 8536400 9236600 5599900 9394800 775850 11486000 5316300 6243100 4781800 9487700 8237000 8379000 8878700 4 4 3 4 4 4 4 4 4 4 4 447820000 262720000 185090000 7342 3071 6841 39485;39486;39487;39488 47417;47418;47419;47420;47421;47422;47423 47418 7 GRAEVLISTVGPEDCVVPFLTRPK Unmodified 2639.4105 0.41050686 1254 P56192;P56192-2 MARS Methionine--tRNA ligase, cytoplasmic yes no 0 0 0 2 By MS/MS By MS/MS 1.25 0.433 3 1 3 1 67.664 67.535 4;5 1.84E-37 21136 20211116_3428_TMUAki_TMT10x_P_F1 183.15 176.03 20619000 36082000 85778 32276000 24401000 38137000 24324000 26607000 25259000 26691000 28848000 19198000 33654000 1152600 33284000 23396000 38231000 24706000 27637000 25783000 26064000 27717000 8 8 4 8 8 8 8 8 8 8 8 12224000 21731000 71705 18641000 13941000 28881000 15432000 16761000 15365000 16123000 17553000 11382000 20266000 775920 19388000 13405000 28518000 15573000 17634000 15712000 15773000 16865000 5 5 2 5 5 5 5 5 5 5 5 8395100 14351000 14074 13636000 10460000 9255600 8892600 9845900 9893100 10567000 11295000 7816700 13389000 376710 13896000 9991000 9712400 9133100 10002000 10071000 10291000 10852000 3 3 2 3 3 3 3 3 3 3 3 5775700000 4253800000 1521900000 7343 1254 6842 39489;39490;39491;39492 47424;47425;47426;47427;47428;47429;47430;47431 47424 8 GRAPCAGPSREEELAAVR Unmodified 1924.9537 0.95374187 2671 Q9BU76;Q9BU76-2;Q9BU76-3;Q9BU76-4 MMTAG2 Multiple myeloma tumor-associated protein 2 yes no 0 0 0 2 By MS/MS 4 0 2 2 30.377 30.412 3;4 8.5541E-80 6519 20211116_3431_TMUAki_TMT10x_P_F4 311.06 271.32 318970 553570 26.451 607410 867990 797930 478240 407590 488770 387290 518140 296990 516740 33796 618710 822450 792360 505800 433500 497820 379090 498920 2 2 1 2 2 2 2 2 2 2 2 318970 553570 26.451 607410 867990 797930 478240 407590 488770 387290 518140 296990 516740 33796 618710 822450 792360 505800 433500 497820 379090 498920 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 125790000 125790000 0 7344 2671 6843 39493;39494 47432;47433 47432 2 GRAPQVLVLAPTR Unmodified 1376.8252 0.82521752 2918 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 1 By MS/MS By MS/MS 4 0.707 1 2 1 1 3 39.961 39.974 3 1.5919E-14 10511 20211116_3442_TMUAki_TMT10x_S_F4 162.93 135.79 1850800 2895200 4080.3 3273200 3961100 3706500 2157600 3140500 3020900 2433100 3005700 1723200 2703000 171420 3319000 3752000 3736500 2309600 3200400 3034900 2405400 2900000 3 3 1 3 3 3 3 3 3 3 3 1069600 1501600 0 1782900 3158500 3071900 1531900 1754900 1755000 1364700 1627600 995830 1402200 103410 1818300 2986700 3020300 1645800 1839100 1771100 1348900 1574100 1 1 0 1 1 1 1 1 1 1 1 781160 1393600 4080.3 1490300 802530 634620 625730 1385500 1265800 1068400 1378000 727360 1300800 68016 1500700 765250 716160 663770 1361300 1263800 1056500 1325900 2 2 1 2 2 2 2 2 2 2 2 584690000 366660000 218030000 7345 2918 6844 39495;39496;39497;39498 47434;47435;47436 47436 3 GRAQADLALEK Unmodified 1170.6357 0.63568542 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 34.706 34.766 3 0.00038527 8350 20211116_3431_TMUAki_TMT10x_P_F4 83.204 50.983 3843600 5776800 5004.5 6604800 6464600 6756900 4677300 4041000 4439900 3572200 4949300 3578500 5393400 329520 6681800 6151900 6813100 4830500 4231700 4545300 3508100 4758600 5 5 1 5 5 5 5 5 5 5 5 3250000 4820400 0 5546800 5836000 6260800 4067100 3445900 3796300 3040000 4154100 3025800 4500700 276040 5618100 5549400 6270800 4209500 3633400 3886600 2985800 3996300 3 3 0 3 3 3 3 3 3 3 3 593540 956350 5004.5 1058000 628630 496110 610170 595150 643590 532190 795170 552670 892760 53473 1063700 602540 542290 620920 598220 658660 522360 762380 2 2 1 2 2 2 2 2 2 2 2 193940000 147150000 46790000 7346 1741 6845 39499;39500;39501;39502 47437;47438;47439;47440;47441 47437 5 GRDDCGTFEDTGPLLQFDYK Unmodified 2333.027 0.027025972 1724 Q14684;Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 0 1 By MS/MS By MS/MS 3 0.707 1 2 1 3 1 68.184 67.942 3 4.4375E-32 21678 20211116_3431_TMUAki_TMT10x_P_F4 187.47 172.92 27248000 44952000 131560 41278000 29574000 44202000 31949000 27736000 26617000 29254000 32312000 25371000 41932000 2330400 42414000 28419000 44479000 32118000 29076000 27513000 28508000 30994000 8 8 4 8 8 8 8 8 8 8 8 17795000 28533000 131560 26412000 18296000 33293000 20474000 18352000 17579000 18932000 20155000 16570000 26616000 1540100 27197000 17602000 33156000 20564000 19430000 18102000 18467000 19363000 5 5 4 5 5 5 5 5 5 5 5 9453000 16419000 0 14866000 11278000 10909000 11475000 9384400 9037300 10321000 12156000 8801600 15315000 790280 15216000 10817000 11323000 11554000 9646400 9411300 10042000 11630000 3 3 0 3 3 3 3 3 3 3 3 2459600000 1968700000 490880000 7347 1724 6846 39503;39504;39505;39506 47442;47443;47444;47445;47446;47447;47448;47449 47446 8 GRDIVVLGVEK Unmodified 1183.6925 0.69247202 137 O14818;O14818-4 PSMA7 Proteasome subunit alpha type-7 yes no 0 0 0 1 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 46.328 46.486 3 1.7559E-11 12089 20211116_3434_TMUAki_TMT10x_P_F6 128.54 74.972 5369500 8263500 25018 8370200 8575500 9455200 5868600 5231100 5018300 4563700 6666300 4999500 7711200 487580 8547600 8154300 9470500 6068000 5511800 5200900 4484600 6379700 2 2 1 2 2 2 2 2 2 2 2 5369500 8263500 25018 8370200 8575500 9455200 5868600 5231100 5018300 4563700 6666300 4999500 7711200 487580 8547600 8154300 9470500 6068000 5511800 5200900 4484600 6379700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 196340000 196340000 0 7348 137 6847 39507;39508;39509 47450;47451;47452;47453 47452 4 GRDIVVLGVEKK Unmodified 1311.7874 0.78743503 137 O14818;O14818-4 PSMA7 Proteasome subunit alpha type-7 yes no 0 0 0 2 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 42.47 42.735 4 7.9124E-08 10723 20211116_3447_TMUAki_TMT10x_S_F8 138.77 106.71 7961600 12118000 107040 10267000 8952200 10055000 7175000 6637300 6345600 6200500 8474900 7413800 11301000 773710 10601000 8545600 10180000 7345200 6907800 6567400 6073700 8109500 5 5 5 5 5 5 5 5 5 5 5 4247100 6354800 48727 5463700 5021300 6275700 3439300 3635900 3460400 3357600 4442600 3954800 5926400 408370 5649000 4777900 6283900 3572000 3821600 3554300 3290600 4255200 2 2 2 2 2 2 2 2 2 2 2 3714500 5763500 58316 4802900 3930900 3779500 3735800 3001500 2885200 2842900 4032300 3459000 5374400 365340 4952300 3767700 3895900 3773200 3086200 3013100 2783100 3854300 3 3 3 3 3 3 3 3 3 3 3 1113600000 777570000 336030000 7349 137 6848 39510;39511;39512;39513;39514 47454;47455;47456;47457;47458 47458 5 GRDPALPTLLNPK Unmodified 1390.7932 0.79324869 1660 Q13724;Q13724-2 MOGS Mannosyl-oligosaccharide glucosidase yes no 0 0 0 1 By MS/MS 8 0 1 1 50.82 50.722 3 1.2938E-12 13920 20211116_3447_TMUAki_TMT10x_S_F8 132.97 84.962 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7350 1660 6849 39515 47459 47459 1 GRDPSSDTYEEDSELLLQIR Unmodified 2322.0975 0.097548378 3076 Q9UBE0 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 63.578 63.446 3 2.3097E-71 19500 20211116_3428_TMUAki_TMT10x_P_F1 282.33 262.6 7084500 11611000 20356 11759000 7711500 11889000 9025600 6478500 7065700 7046400 9204800 6595700 10835000 506540 11988000 7421300 11982000 9025700 6877000 7349800 6858500 8813300 3 3 1 3 3 3 3 3 3 3 3 5198600 8094300 0 8382100 5466600 9951000 6605700 4645900 5174200 4973000 6489600 4839600 7553900 326180 8554300 5263200 9921400 6596600 5001200 5373200 4843400 6219500 2 2 0 2 2 2 2 2 2 2 2 1885900 3516500 20356 3377100 2244800 1938300 2419900 1832600 1891500 2073400 2715200 1756100 3280700 180350 3433500 2158100 2061000 2429100 1875800 1976600 2015100 2593800 1 1 1 1 1 1 1 1 1 1 1 1629800000 880710000 749040000 7351 3076 6850 39516;39517;39518 47460;47461;47462;47463 47460 4 GRDPVEILIPK Unmodified 1235.7238 0.72377215 2057 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme yes yes 0 0 0 1 By MS/MS 6 0 1 1 54.112 54.217 3 0.038617 15545 20211116_3445_TMUAki_TMT10x_S_F6 50.116 26.88 3258500 5289700 54534 5806800 3304400 3094100 2839300 5411800 5121100 4626900 4862700 3034400 4937800 321620 5846800 3160000 3371500 2974900 5361900 5100900 4551200 4698800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3258500 5289700 54534 5806800 3304400 3094100 2839300 5411800 5121100 4626900 4862700 3034400 4937800 321620 5846800 3160000 3371500 2974900 5361900 5100900 4551200 4698800 1 1 1 1 1 1 1 1 1 1 1 129630000 0 129630000 7352 2057 6851 39519 47464 47464 1 GRDVIAQSQSGTGK Unmodified 1402.7165 0.71645494 973 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 0 0 0 1 By MS/MS 5 0 1 1 30.225 30.157 3 3.7094E-09 6777 20211116_3433_TMUAki_TMT10x_P_F5 125.75 102.06 170100 262430 4882.2 271120 268290 308080 202330 136480 169580 146470 214850 158420 244910 20028 276530 255890 307710 207670 147720 175560 142640 205850 1 1 1 1 1 1 1 1 1 1 1 170100 262430 4882.2 271120 268290 308080 202330 136480 169580 146470 214850 158420 244910 20028 276530 255890 307710 207670 147720 175560 142640 205850 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25180000 25180000 0 7353 973 6852 39520 47465 47465 1 GRDWNVDLIPK Unmodified 1311.6935 0.69353465 1133;884 P50395;P50395-2;P31150 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha no no 0 0 0 1 By MS/MS By MS/MS 6.29 1.03 2 2 2 1 3 4 54.162 54.409 3 6.5415E-06 17016 20211116_3435_TMUAki_TMT10x_P_F7 115.92 88.822 67668000 106750000 1073600 131280000 80165000 91702000 69460000 43412000 41967000 46830000 79388000 63008000 99704000 6059100 130520000 76509000 94775000 70046000 46677000 45225000 45596000 75424000 10 10 7 9 8 10 9 10 10 10 10 33688000 51297000 451030 52432000 57200000 71006000 42114000 20194000 19882000 23210000 37637000 31365000 47869000 2973500 52605000 54457000 70048000 42699000 23186000 21829000 22544000 35757000 5 5 3 4 4 5 4 5 5 5 5 33981000 55457000 622570 78844000 22964000 20696000 27346000 23218000 22085000 23620000 41751000 31643000 51835000 3085600 77912000 22052000 24727000 27346000 23491000 23396000 23052000 39667000 5 5 4 5 4 5 5 5 5 5 5 10474000000 5451100000 5022700000 7354 1133;884 6853 39521;39522;39523;39524;39525;39526;39527 47466;47467;47468;47469;47470;47471;47472;47473;47474;47475 47469 10 GREDVALEQDTYWR Unmodified 1736.8118 0.81181188 1435 P78559;P78559-2 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 yes no 0 0 0 1 By MS/MS 3 0 1 1 44.954 44.972 3 0.00022106 13935 20211116_3430_TMUAki_TMT10x_P_F3 78.597 64.633 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7355 1435 6854 39528 47476 47476 1 GREEYEGPNK Unmodified 1177.5364 0.53636531 777 P23246 SFPQ Splicing factor, proline- and glutamine-rich yes yes 0 0 0 1 By MS/MS 4 0 1 1 28.323 28.367 3 0.0018097 5705 20211116_3431_TMUAki_TMT10x_P_F4 74.094 55.586 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7356 777 6855 39529 47477 47477 1 GREFSFEAWNAK Unmodified 1440.6786 0.67861287 1428 P78347;P78347-2;P78347-4;P78347-3 GTF2I General transcription factor II-I yes no 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 52.864 53.377 3 0.00026204 17205 20211116_3446_TMUAki_TMT10x_S_F7 85.45 63.252 10762000 18455000 107980 20538000 9920600 9194500 9055700 13129000 10951000 11793000 13681000 10021000 17228000 981060 20636000 9497100 10155000 9289500 13110000 11155000 11573000 13113000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10762000 18455000 107980 20538000 9920600 9194500 9055700 13129000 10951000 11793000 13681000 10021000 17228000 981060 20636000 9497100 10155000 9289500 13110000 11155000 11573000 13113000 1 1 1 1 1 1 1 1 1 1 1 558760000 0 558760000 7357 1428 6856 39530;39531 47478;47479 47479 2 GREGPVQFEEDPFGLDK Unmodified 1918.9061 0.9061062 1649 Q13573 SNW1 SNW domain-containing protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 3 1.41 1 1 1 1 1 4 1 61.7 61.547 3 5.156E-11 20350 20211116_3429_TMUAki_TMT10x_P_F2 132.14 102 17979000 27516000 416700 28370000 20646000 28426000 20489000 19484000 19453000 20968000 22637000 16742000 25679000 1866500 28883000 19815000 28754000 20759000 20306000 19949000 20417000 21738000 4 4 3 4 4 4 4 4 4 4 4 10859000 15641000 142820 16430000 11646000 19466000 12465000 9474500 9473700 11012000 11580000 10112000 14597000 994650 16751000 11192000 19418000 12508000 10183000 9843500 10692000 11105000 2 2 1 2 2 2 2 2 2 2 2 7119200 11875000 273880 11940000 9000800 8960600 8023500 10009000 9979700 9955600 11057000 6630700 11081000 871830 12132000 8622400 9335800 8250300 10122000 10105000 9725300 10633000 2 2 2 2 2 2 2 2 2 2 2 1642700000 1343500000 299210000 7358 1649 6857 39532;39533;39534;39535;39536 47480;47481;47482;47483;47484;47485 47481 6 GRELPTAFDYVEFTR Unmodified 1799.8842 0.88424855 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS By MS/MS 6.17 1.07 2 2 1 1 2 4 61.633 61.761 3 1.1273E-33 18653 20211116_3445_TMUAki_TMT10x_S_F6 228.84 178.48 26479000 46395000 329290 43101000 32686000 37000000 30582000 29973000 27713000 29247000 34375000 24656000 43279000 2468800 44111000 31300000 37911000 31042000 30807000 28555000 28594000 32954000 7 7 3 7 7 7 7 7 7 7 7 9774900 16654000 188170 16102000 11659000 19197000 12123000 11110000 10383000 11035000 12201000 9102300 15538000 951780 16512000 11198000 19184000 12219000 11702000 10703000 10780000 11714000 3 3 2 3 3 3 3 3 3 3 3 16704000 29741000 141110 26998000 21028000 17803000 18459000 18862000 17331000 18212000 22174000 15554000 27742000 1517000 27599000 20102000 18727000 18823000 19105000 17852000 17814000 21240000 4 4 1 4 4 4 4 4 4 4 4 4785500000 1877400000 2908100000 7359 1663 6858 39537;39538;39539;39540;39541;39542 47486;47487;47488;47489;47490;47491 47490 6 GREPANEASVEYLQEVAR Unmodified 2016.9865 0.98648179 1959 Q63HN8;Q63HN8-4 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 0 0 0 1 By MS/MS 3 0 1 1 45.891 45.898 3 2.3049E-06 14338 20211116_3430_TMUAki_TMT10x_P_F3 98.443 79.084 461750 724630 4784.2 885610 1158400 1218800 716450 708830 701920 594890 643900 429970 676750 52499 897080 1099900 1209600 749390 743010 712660 585690 622940 1 1 1 1 1 1 1 1 1 1 1 461750 724630 4784.2 885610 1158400 1218800 716450 708830 701920 594890 643900 429970 676750 52499 897080 1099900 1209600 749390 743010 712660 585690 622940 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 65016000 65016000 0 7360 1959 6859 39543 47492 47492 1 GRESVLIISTDPAHNISDAFDQK Unmodified 2512.2558 0.25578035 233 O43681 ASNA1 ATPase ASNA1 yes yes 0 0 0 1 By MS/MS By MS/MS 6 0.707 1 2 1 2 2 61.685 61.854 4 6.0077E-12 19445 20211116_3433_TMUAki_TMT10x_P_F5 120.33 106.29 17637000 28423000 87455 27195000 20412000 33317000 20230000 19429000 19709000 19245000 20928000 16421000 26517000 1485800 27921000 19566000 33251000 20514000 20450000 20117000 18803000 20150000 5 5 2 5 5 5 5 5 5 5 5 14049000 22792000 87455 21400000 16630000 29505000 17110000 15551000 15508000 15720000 17117000 13082000 21262000 1242500 22051000 15960000 29244000 17280000 16520000 15904000 15346000 16463000 4 4 2 4 4 4 4 4 4 4 4 3587300 5630800 0 5794400 3781800 3811800 3120900 3878700 4200900 3524600 3810300 3339700 5254800 243310 5870000 3605800 4007000 3233600 3929600 4212600 3456900 3687800 1 1 0 1 1 1 1 1 1 1 1 2457700000 1597300000 860460000 7361 233 6860 39544;39545;39546;39547 47493;47494;47495;47496;47497 47494 5 GRFFLDR Unmodified 909.48209 0.48208531 2430 Q96CX2 KCTD12 BTB/POZ domain-containing protein KCTD12 yes yes 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 38.226 38.141 3 0.05415 9225 20211116_3440_TMUAki_TMT10x_S_F2 55.531 0 1214300 1748400 0 2074000 897480 989270 1268500 668280 741290 838580 1259200 1130400 1632700 66383 2076600 867930 1067500 1251000 700760 795590 811990 1198700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1214300 1748400 0 2074000 897480 989270 1268500 668280 741290 838580 1259200 1130400 1632700 66383 2076600 867930 1067500 1251000 700760 795590 811990 1198700 1 1 0 1 1 1 1 1 1 1 1 43919000 0 43919000 7362 2430 6861 39548;39549;39550 47498;47499;47500 47500 3 GRFPESSAVQSSSFER Unmodified 1769.8333 0.83327561 2986 Q9NWH9;Q9NWH9-3 SLTM SAFB-like transcription modulator yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 36.244 36.303 3 4.2889E-47 7922 20211116_3444_TMUAki_TMT10x_S_F5 250.27 226.34 3913900 6564400 80937 8283400 9762600 9978900 5834000 6379800 7316900 5514500 6146500 3644900 6131700 481830 8354400 9267000 9980400 6169000 6642300 7337300 5421400 5965500 6 6 5 6 6 6 6 6 6 6 6 3032800 5079700 56212 6203800 9227800 9372800 5340000 4863400 5593700 4196400 4536200 2824300 4744100 390590 6296900 8753700 9251600 5627800 5152400 5642000 4125900 4408600 4 4 4 4 4 4 4 4 4 4 4 881140 1484700 24726 2079600 534800 606070 493980 1516400 1723200 1318100 1610300 820620 1387600 91236 2057500 513260 728770 541250 1489900 1695300 1295500 1556900 2 2 1 2 2 2 2 2 2 2 2 709190000 548580000 160610000 7363 2986 6862 39551;39552;39553 47501;47502;47503;47504;47505;47506 47505 6 GRFYAFGR Unmodified 972.49298 0.49298435 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 36.191 36.292 3 0.00073823 7961 20211116_3444_TMUAki_TMT10x_S_F5 122.74 80.455 1221500 1931000 3837.9 2753200 2280100 1839100 1191300 1333900 1310100 1114400 1657200 1137400 1804900 119680 2737000 2159200 1918500 1269000 1375200 1339900 1097500 1587900 2 2 2 2 2 2 2 2 2 2 2 800520 1284200 2131.9 1770300 1926500 1619500 882390 879220 857480 766170 1119700 745380 1200100 84126 1769400 1821100 1642500 948870 927910 882740 752940 1072000 1 1 1 1 1 1 1 1 1 1 1 421030 646770 1706 982930 353610 219510 308900 454710 452620 348260 537470 392030 604770 35552 967590 338040 275990 320120 447260 457190 344520 515850 1 1 1 1 1 1 1 1 1 1 1 108550000 69294000 39253000 7364 653 6863 39554;39555;39556 47507;47508;47509 47509 3 GRGGGFK Unmodified 677.36091 0.36090754 1532 Q06787-8;Q06787-6;Q06787-5;Q06787;Q06787-7;Q06787-2;Q06787-4;Q06787-9;Q06787-3 FMR1 Fragile X mental retardation protein 1 yes no 0 0 0 1 By MS/MS 2 0 1 1 26.149 25.911 3 0.039072 6021 20211116_3429_TMUAki_TMT10x_P_F2 60.358 13.695 279380 452870 3517.8 330950 328880 516240 312230 224910 234050 237420 325730 260160 422120 27135 349000 315140 507940 315160 243750 244780 231360 311380 1 1 1 1 1 1 1 1 1 1 1 279380 452870 3517.8 330950 328880 516240 312230 224910 234050 237420 325730 260160 422120 27135 349000 315140 507940 315160 243750 244780 231360 311380 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16657000 16657000 0 7365 1532 6864 39557 47510 47510 1 GRGLEYLYLNVHDEDRDDQTR Unmodified 2563.2051 0.20514177 3350 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 yes yes 0 0 0 2 By MS/MS 4 0 1 1 44.263 44.474 5 9.6027E-08 12556 20211116_3442_TMUAki_TMT10x_S_F4 98.703 89.519 1188800 1711000 0 2294900 1647700 1263900 914710 1711800 1236100 1622500 1322100 1106800 1598800 95453 2284500 1560800 1361300 976110 1715200 1246600 1588300 1272700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1188800 1711000 0 2294900 1647700 1263900 914710 1711800 1236100 1622500 1322100 1106800 1598800 95453 2284500 1560800 1361300 976110 1715200 1246600 1588300 1272700 1 1 0 1 1 1 1 1 1 1 1 305140000 0 305140000 7366 3350 6865 39558 47511 47511 1 GRGLVVSPK Unmodified 911.55525 0.55525025 1449 P83876 TXNL4A Thioredoxin-like protein 4A yes yes 0 0 0 1 By MS/MS 2 0 1 1 32.91 32.688 3 0.053466 8565 20211116_3429_TMUAki_TMT10x_P_F2 54.066 33.441 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7367 1449 6866 39559 47512 47512 1 GRGPDDFESQLSPPGSAR Unmodified 1871.8762 0.87620305 1890 Q3ZCQ8-2 TIMM50 Mitochondrial import inner membrane translocase subunit TIM50 yes yes 0 0 0 1 By MS/MS By MS/MS 2.75 0.829 2 1 1 1 3 83.357 83.348 2 0.018038 30571 20211116_3441_TMUAki_TMT10x_S_F3 73.781 49.93 832630 1372400 5577.6 1445200 1060500 1187300 1000500 853180 887780 947260 1222200 775240 1280900 70195 1465300 1015200 1217900 1014500 887130 919970 921270 1168600 4 4 2 4 4 4 4 4 4 4 4 221120 319580 2913.7 383600 247940 437750 224450 193480 234330 227830 339870 205910 298440 21424 387620 237320 437120 229200 210080 241700 221100 324590 1 1 1 1 1 1 1 1 1 1 1 611500 1052900 2663.9 1061600 812580 749550 776080 659700 653450 719430 882320 569330 982480 48772 1077700 777910 780820 785320 677060 678260 700170 844060 3 3 1 3 3 3 3 3 3 3 3 257770000 119760000 138010000 7368 1890 6867 39560;39561;39562;39563 47513 47513 1 GRGTGEAEEEYVGPR Unmodified 1605.7383 0.73831259 1669 Q13895 BYSL Bystin yes yes 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 29.765 29.71 3 1.423E-33 7437 20211116_3429_TMUAki_TMT10x_P_F2 226.39 198.74 268130 372200 3076 455740 679050 547830 317940 299750 411050 229190 389070 249640 347610 26371 460410 641920 546830 344270 315170 413320 226750 376000 3 3 1 3 3 3 3 3 3 3 3 194320 248730 0 327610 603450 479060 232310 223530 304840 173920 278870 180890 232380 17359 330910 569000 472950 257290 238680 306030 171900 269820 2 2 0 2 2 2 2 2 2 2 2 73811 123470 3076 128130 75602 68763 85635 76216 106210 55275 110200 68749 115230 9011.3 129490 72929 73881 86976 76488 107290 54847 106180 1 1 1 1 1 1 1 1 1 1 1 40559000 33172000 7386700 7369 1669 6868 39564;39565;39566 47514;47515;47516 47515 3 GRGVTFLFPIQAK Unmodified 1432.8191 0.81906951 2918 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 1 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 61.693 61.937 3 8.8982E-10 18756 20211116_3445_TMUAki_TMT10x_S_F6 138.02 106.79 38167000 63357000 316630 67469000 46918000 44327000 37609000 38319000 32140000 33135000 44959000 35539000 59134000 3528700 68193000 44769000 46450000 38466000 39108000 33391000 32575000 42974000 7 7 5 7 7 7 7 7 7 7 7 13851000 22491000 165740 24049000 18164000 27310000 17429000 13791000 11440000 12359000 16213000 12897000 20992000 1363200 24473000 17408000 27317000 17532000 14661000 12070000 12130000 15493000 3 3 3 3 3 3 3 3 3 3 3 24317000 40866000 150890 43419000 28754000 17017000 20180000 24528000 20699000 20775000 28746000 22642000 38142000 2165600 43720000 27361000 19133000 20934000 24447000 21321000 20445000 27481000 4 4 2 4 4 4 4 4 4 4 4 4999300000 2308600000 2690600000 7370 2918 6869 39567;39568;39569;39570;39571;39572 47517;47518;47519;47520;47521;47522;47523 47522 7 GRLDNGQVGLYPANYVEAIQ Unmodified 2176.0913 0.091281208 3190 Q9UNF0;Q9UNF0-2 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 yes no 0 0 0 1 By MS/MS 6 0 1 1 68.539 68.463 3 0.0089544 21459 20211116_3445_TMUAki_TMT10x_S_F6 49.768 29.93 2729100 4621500 0 4261600 3250900 2928000 3128900 2689300 2488400 3034000 3715300 2540800 4311000 200840 4353000 3111900 3059700 3160400 2756600 2603100 2949000 3546100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2729100 4621500 0 4261600 3250900 2928000 3128900 2689300 2488400 3034000 3715300 2540800 4311000 200840 4353000 3111900 3059700 3160400 2756600 2603100 2949000 3546100 1 1 0 1 1 1 1 1 1 1 1 315250000 0 315250000 7371 3190 6870 39573 47524 47524 1 GRLIIEFK Unmodified 974.5913 0.59130141 889 P31689;P31689-2 DNAJA1 DnaJ homolog subfamily A member 1 yes no 0 0 0 1 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 51.429 51.199 3 0.00050979 14745 20211116_3440_TMUAki_TMT10x_S_F2 130.75 80.707 29825000 41873000 268090 49299000 31557000 28252000 23047000 20161000 20387000 19321000 26472000 27771000 39100000 2678000 49454000 30056000 29897000 23740000 20881000 21072000 18905000 25348000 6 6 4 6 6 6 6 6 6 6 6 15600000 21068000 134400 25602000 15447000 19012000 11064000 10061000 10362000 9939400 13554000 14526000 19675000 1398700 25699000 14708000 19573000 11430000 10677000 10686000 9712400 12976000 2 2 1 2 2 2 2 2 2 2 2 14225000 20806000 133690 23698000 16110000 9239800 11982000 10100000 10024000 9381700 12918000 13246000 19425000 1279200 23755000 15348000 10324000 12309000 10204000 10386000 9192200 12372000 4 4 3 4 4 4 4 4 4 4 4 1453800000 711910000 741890000 7372 889 6871 39574;39575;39576;39577;39578;39579 47525;47526;47527;47528;47529;47530;47531 47530 7 GRLNARPGVGGVR Unmodified 1307.7534 0.75344956 2725 Q9BY77;Q9BY77-2 POLDIP3 Polymerase delta-interacting protein 3 yes no 0 0 0 2 By MS/MS 5 0 1 1 26.819 26.745 4 0.0033133 5377 20211116_3433_TMUAki_TMT10x_P_F5 68.563 49.891 115850 182310 1970.6 158960 125420 187360 117360 87695 100360 83883 125840 107880 170030 11575 164240 120180 186880 118940 94079 103750 82082 120600 1 1 1 1 1 1 1 1 1 1 1 115850 182310 1970.6 158960 125420 187360 117360 87695 100360 83883 125840 107880 170030 11575 164240 120180 186880 118940 94079 103750 82082 120600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10654000 10654000 0 7373 2725 6872 39580 47532 47532 1 GRLNRLPAAGVGDMVMATVK 2 Oxidation (M) 2087.098 0.097963266 1369 P62829 RPL23 60S ribosomal protein L23 yes yes 0 0 2 2 By MS/MS 3 0 1 1 40.723 40.421 4 0.0099717 13234 20211116_3441_TMUAki_TMT10x_S_F3 49.773 34.008 360770 556670 16787 660980 387390 325350 315720 546000 549080 395520 598040 336040 519820 45928 661920 370670 357110 331220 539500 550120 392490 575390 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 360770 556670 16787 660980 387390 325350 315720 546000 549080 395520 598040 336040 519820 45928 661920 370670 357110 331220 539500 550120 392490 575390 1 1 1 1 1 1 1 1 1 1 1 48932000 0 48932000 7374 1369 6873 39581 47533 47533 1837;1838 1 GRLSPVPVPR Unmodified 1076.6455 0.64546224 3158 Q9UKM9;Q9UKM9-2 RALY RNA-binding protein Raly yes no 0 0 0 1 By matching By MS/MS 2.5 0.5 1 1 1 1 33.513 33.282 3 0.05186 10356 20211116_3441_TMUAki_TMT10x_S_F3 45.829 26.042 335860 536510 2526.4 584540 355670 301980 324610 425340 453840 420390 466290 312740 500800 30477 588710 340400 327840 334890 426080 456490 410780 449420 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 335860 536510 2526.4 584540 355670 301980 324610 425340 453840 420390 466290 312740 500800 30477 588710 340400 327840 334890 426080 456490 410780 449420 1 1 1 1 1 1 1 1 1 1 1 40356000 25500000 14856000 7375 3158 6874 39582;39583 47534 47534 1 GRLYPWGVVEVENPEHNDFLK Unmodified 2497.239 0.23900808 1752 Q15019;Q15019-2;Q15019-3 SEPT2 Septin-2 yes no 0 0 0 1 By MS/MS 7 0 1 1 64.718 65.361 4 1.3995E-07 21599 20211116_3435_TMUAki_TMT10x_P_F7 97.083 76.077 4903900 8007200 0 7609500 5187600 8718000 6549300 4283300 3643600 4460700 5745500 4566000 7470100 409790 7807600 5008300 8713300 6482100 4584100 3908500 4349200 5477400 1 1 0 1 1 1 1 1 1 1 1 4903900 8007200 0 7609500 5187600 8718000 6549300 4283300 3643600 4460700 5745500 4566000 7470100 409790 7807600 5008300 8713300 6482100 4584100 3908500 4349200 5477400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482130000 482130000 0 7376 1752 6875 39584 47535 47535 1 GRNEEQGIPLEYLEK Unmodified 1773.8897 0.88972785 830 P27707 DCK Deoxycytidine kinase yes yes 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 54.599 54.757 3 4.4153E-07 16854 20211116_3442_TMUAki_TMT10x_S_F4 103.77 83.386 4792300 7466700 62287 8546600 7944500 11241000 6487100 6772200 6168900 5454400 6252300 4462500 6971300 499510 8683000 7584700 11185000 6646500 7071600 6292700 5381300 6028800 2 2 2 2 2 2 2 2 2 2 2 4792300 7466700 62287 8546600 7944500 11241000 6487100 6772200 6168900 5454400 6252300 4462500 6971300 499510 8683000 7584700 11185000 6646500 7071600 6292700 5381300 6028800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 368350000 368350000 0 7377 830 6876 39585;39586;39587 47536;47537;47538;47539 47539 4 GRPAPGFHHGDGPGNAVQEIMIPASK Oxidation (M) 2655.2976 0.29760236 2408;2407 Q96AE4-2;Q96AE4 FUBP1 Far upstream element-binding protein 1 no no 0 0 1 1 By MS/MS By MS/MS 6.8 0.909 2 2 8 3 10 5 35.146 35.374 4;5 5.209E-39 11306 20211116_3435_TMUAki_TMT10x_P_F7 190.19 177.88 27469000 43902000 146880 49494000 58455000 66293000 33565000 54024000 58285000 42667000 46723000 25576000 40986000 1707000 50348000 55416000 66223000 36113000 55207000 57803000 42139000 45430000 30 30 10 30 30 30 30 30 30 30 30 19929000 30792000 88114 34061000 51984000 60036000 27697000 40166000 43495000 31587000 33490000 18555000 28744000 1108100 34906000 49227000 59112000 29853000 41584000 43202000 31203000 32617000 20 20 7 20 20 20 20 20 20 20 20 7540000 13110000 58769 15432000 6471200 6256600 5868000 13858000 14790000 11080000 13233000 7020400 12242000 598880 15442000 6189100 7110600 6259900 13623000 14601000 10936000 12813000 10 10 3 10 10 10 10 10 10 10 10 9802800000 7931600000 1871200000 7378 2408;2407 6877 39588;39589;39590;39591;39592;39593;39594;39595;39596;39597;39598;39599;39600;39601;39602 47540;47541;47542;47543;47544;47545;47546;47547;47548;47549;47550;47551;47552;47553;47554;47555;47556;47557;47558;47559;47560;47561;47562;47563;47564;47565;47566;47567;47568 47558 2734 29 GRPAPGFHHGDGPGNAVQEIMIPASK Unmodified 2639.3027 0.30268774 2408;2407 Q96AE4-2;Q96AE4 FUBP1 Far upstream element-binding protein 1 no no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 3 3 2 4 44.092 44.371 4;5 7.9444E-39 11404 20211116_3447_TMUAki_TMT10x_S_F8 187.29 172.74 30892000 49616000 460200 59191000 41677000 35793000 31703000 29127000 27304000 27649000 39406000 28766000 46332000 2991700 59359000 39729000 37757000 32543000 29907000 28399000 27064000 37639000 15 15 9 15 15 15 15 15 15 15 15 12066000 19035000 340840 22999000 24796000 22734000 16876000 11564000 10708000 11165000 15136000 11237000 17777000 1448600 23178000 23594000 22925000 17341000 12310000 11321000 10921000 14464000 4 4 3 4 4 4 4 4 4 4 4 18825000 30580000 119350 36193000 16881000 13059000 14827000 17563000 16595000 16484000 24270000 17528000 28556000 1543100 36180000 16135000 14832000 15202000 17597000 17078000 16143000 23175000 11 11 6 11 11 11 11 11 11 11 11 5922700000 3074000000 2848600000 7379 2408;2407 6877 39603;39604;39605;39606;39607;39608 47569;47570;47571;47572;47573;47574;47575;47576;47577;47578;47579;47580;47581;47582;47583 47583 15 GRPDPYAYIPLNR Unmodified 1530.7943 0.79431133 1920 Q5JTH9;Q5JTH9-2;Q5JTH9-3 RRP12 RRP12-like protein yes no 0 0 0 1 By MS/MS 8 0 1 1 48.588 48.489 3 0.064302 13018 20211116_3447_TMUAki_TMT10x_S_F8 44.045 33.475 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7380 1920 6878 39609 47584 47584 1 GRPGLCTPQCASLEPGPPAPSR Unmodified 2304.1103 0.11031887 1879 Q2T9J0;Q2T9J0-2 TYSND1 Peroxisomal leader peptide-processing protease;Peroxisomal leader peptide-processing protease, 15 kDa form;Peroxisomal leader peptide-processing protease, 45 kDa form yes no 0 0 0 1 By MS/MS 8 0 1 1 37.99 38.263 3 3.3696E-12 9331 20211116_3436_TMUAki_TMT10x_P_F8 114.63 105.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7381 1879 6879 39610 47585 47585 1 GRPPIATFSANPEAK Unmodified 1554.8154 0.8154407 2514 Q96L91;Q96L91-4;Q96L91-3;Q96L91-5;Q96L91-2 EP400 E1A-binding protein p400 yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 40.905 41.081 3 0.00028665 9942 20211116_3447_TMUAki_TMT10x_S_F8 74.271 54.693 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7382 2514 6880 39611;39612 47586;47587 47587 2 GRPQLLPPARPAAR Unmodified 1498.8845 0.88446374 2951 Q9NUD5;Q9NUD5-2 ZCCHC3 Zinc finger CCHC domain-containing protein 3 yes no 0 0 0 2 By MS/MS 4.5 0.5 1 1 2 30.048 30.033 4 2.2567E-06 6683 20211116_3433_TMUAki_TMT10x_P_F5 115.34 98.71 3626500 5395900 56271 4395000 8193700 14562000 8191500 11504000 5861500 9154200 8646500 3377000 5031200 417070 4706400 7859900 14139000 8237000 11780000 6163900 9037200 8254800 2 2 2 2 2 2 2 2 2 2 2 3626500 5395900 56271 4395000 8193700 14562000 8191500 11504000 5861500 9154200 8646500 3377000 5031200 417070 4706400 7859900 14139000 8237000 11780000 6163900 9037200 8254800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 56829000 56829000 0 7383 2951 6881 39613;39614 47588 47588 1 GRPTSTNPIASIFAWTR Unmodified 1873.9799 0.97988027 1083 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 7 0.707 1 2 1 2 2 70.118 70.243 3 3.0508E-30 23573 20211116_3435_TMUAki_TMT10x_P_F7 197.94 175.03 22956000 38544000 321130 35781000 30596000 29806000 29041000 30418000 22849000 26534000 29545000 21375000 35955000 2163100 36608000 29308000 30747000 29347000 30780000 23754000 26074000 28294000 6 6 4 6 6 6 6 6 6 6 6 5935100 9628400 62483 8711800 7096500 11922000 8625100 8323400 5727800 6412500 7318600 5526300 8980900 519860 9000200 6843700 11866000 8579200 8587100 6010300 6341500 7010700 2 2 1 2 2 2 2 2 2 2 2 17020000 28916000 258650 27069000 23500000 17884000 20416000 22095000 17122000 20121000 22226000 15849000 26974000 1643200 27608000 22464000 18880000 20768000 22193000 17744000 19733000 21283000 4 4 3 4 4 4 4 4 4 4 4 4049100000 2137700000 1911400000 7384 1083 6882 39615;39616;39617;39618 47589;47590;47591;47592;47593;47594 47590 6 GRPYDYNGPR Unmodified 1193.5578 0.55776945 654 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 28.844 28.831 3 3.3837E-05 6219 20211116_3433_TMUAki_TMT10x_P_F5 130.01 107.48 515570 812560 1762.4 906520 1375300 957220 582710 480200 565290 440020 676270 480060 758550 55498 918920 1298800 961310 631970 511110 579780 431400 648940 2 2 1 2 2 2 2 2 2 2 2 515570 812560 1762.4 906520 1375300 957220 582710 480200 565290 440020 676270 480060 758550 55498 918920 1298800 961310 631970 511110 579780 431400 648940 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 60764000 60764000 0 7385 654 6883 39619;39620 47595;47596 47596 2 GRPYTLSVALPGSILDNAQSPELR Unmodified 2553.3551 0.35510047 1937 Q5T280 C9orf114 Putative methyltransferase C9orf114 yes yes 0 0 0 1 By MS/MS 1 0 1 1 69.254 69.254 3 1.4379E-05 21881 20211116_3428_TMUAki_TMT10x_P_F1 69.162 58.965 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7386 1937 6884 39621 47597 47597 1 GRQVIAVAR Unmodified 968.58795 0.58794737 3234;1233 P55039;Q9Y295 DRG2;DRG1 Developmentally-regulated GTP-binding protein 2;Developmentally-regulated GTP-binding protein 1 no no 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 27.679 27.56 3 0.006426 4946 20211116_3428_TMUAki_TMT10x_P_F1 66.299 51.763 179830 303800 0 225400 225260 313730 223220 176430 187230 180870 225830 167400 283190 7471.2 236810 215620 311080 225410 186450 193420 176470 216650 2 2 0 2 2 2 2 2 2 2 2 179830 303800 0 225400 225260 313730 223220 176430 187230 180870 225830 167400 283190 7471.2 236810 215620 311080 225410 186450 193420 176470 216650 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5029300 5029300 0 7387 1233;3234 6885 39622;39623 47598;47599 47598 2 GRRPEHGGPPELFYDETEAR Unmodified 2312.0934 0.093406473 237 O43709;O43709-3;O43709-2 WBSCR22 Probable 18S rRNA (guanine-N(7))-methyltransferase yes no 0 0 0 2 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 34.36 34.253 5 7.8501E-09 7973 20211116_3431_TMUAki_TMT10x_P_F4 108.17 98.113 5432800 8701400 10560 7982200 8707800 9258600 6160700 5046600 5497400 4607700 6788300 5058200 8116700 465170 8213100 8283400 9258700 6361700 5330500 5667500 4518200 6508400 5 5 2 5 5 5 5 5 5 5 5 5100100 8144500 6745.2 7346000 8365000 8984000 5843700 4711100 5082900 4279300 6323200 4748400 7596700 433890 7575000 7955100 8955200 6035800 4992600 5248300 4197200 6061300 4 4 1 4 4 4 4 4 4 4 4 332740 556870 3815 636250 342790 274640 317010 335520 414420 328440 465100 309850 519920 31283 638070 328270 303460 325920 337840 419140 321060 447090 1 1 1 1 1 1 1 1 1 1 1 374080000 325260000 48814000 7388 237 6886 39624;39625 47600;47601;47602;47603;47604 47600 5 GRSDYDGIGSR Unmodified 1181.5425 0.54251332 104 O00571;O00571-2 DDX3X ATP-dependent RNA helicase DDX3X yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 27.783 27.523 3 0.0026023 6531 20211116_3429_TMUAki_TMT10x_P_F2 73.466 52.565 184520 297890 528.11 260030 244570 232450 198910 144330 162570 143070 233390 171810 277820 15630 267540 233330 236520 203020 151150 169490 139780 222950 2 2 1 2 2 2 2 2 2 2 2 75556 123660 0 110400 123650 142780 81976 63530 67325 60577 98308 70342 115340 5936.6 114040 117450 141670 84877 68504 70232 59284 93875 1 1 0 1 1 1 1 1 1 1 1 108970 174230 528.11 149640 120920 89672 116930 80798 95249 82492 135080 101460 162490 9693.9 153490 115880 94851 118150 82649 99262 80496 129080 1 1 1 1 1 1 1 1 1 1 1 8141200 2787000 5354100 7389 104 6887 39626;39627 47605;47606 47605 2 GRTFDEIASGFR Unmodified 1354.663 0.6629628 616 P11166 SLC2A1 Solute carrier family 2, facilitated glucose transporter member 1 yes yes 0 0 0 1 By MS/MS 7 0 1 1 47.974 48.569 3 5.9986E-08 14748 20211116_3435_TMUAki_TMT10x_P_F7 114.7 90.37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7390 616 6888 39628 47607 47607 1 GRTVIIEQSWGSPK Unmodified 1556.8311 0.83109076 613 P10809;P10809-2 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 5.56 3.02 2 1 2 4 4 5 45.048 45.156 3;4 5.5516E-30 11650 20211116_3447_TMUAki_TMT10x_S_F8 213.99 195.9 16794000 26047000 91436 30288000 25829000 20285000 16946000 11675000 11898000 11750000 19107000 15637000 24320000 1537800 30450000 24544000 21088000 17498000 12307000 12581000 11473000 18209000 8 8 3 8 8 8 8 8 8 8 8 9929900 15607000 14382 17739000 18586000 16784000 12168000 7652600 7847400 7526100 11554000 9245300 14571000 899650 17931000 17657000 16953000 12544000 8237700 8304000 7355600 11031000 5 5 1 5 5 5 5 5 5 5 5 6864500 10439000 77054 12550000 7243600 3500400 4778300 4022700 4050300 4224300 7553000 6392000 9748800 638150 12519000 6887600 4135900 4953200 4069700 4276600 4117400 7177600 3 3 2 3 3 3 3 3 3 3 3 3643900000 2367200000 1276700000 7391 613 6889 39629;39630;39631;39632;39633;39634;39635;39636;39637 47608;47609;47610;47611;47612;47613;47614;47615 47615 8 GRTVIVK Unmodified 771.49667 0.49667274 904 P32969 RPL9 60S ribosomal protein L9 yes yes 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 30.056 30.002 3 0.059286 7577 20211116_3429_TMUAki_TMT10x_P_F2 51.736 19.126 3619300 2427900 60698 2403100 1563600 2049300 1559100 1084900 1073000 1101300 1715500 3370400 2265400 327840 2448000 1502800 2087900 1566600 1152300 1135700 1074900 1635000 3 3 3 3 3 3 3 3 3 3 3 2548700 1701900 39987 1662000 1053700 1530400 1004800 758880 763470 791620 1211800 2373400 1587900 227630 1696400 1011600 1549900 1014300 811490 803170 771790 1155100 2 2 2 2 2 2 2 2 2 2 2 1070700 725960 20711 741050 509830 518910 554250 326070 309560 309680 503760 997040 677450 100210 751610 491220 538000 552310 340760 332530 303130 479950 1 1 1 1 1 1 1 1 1 1 1 27154000 17961000 9192800 7392 904 6890 39638;39639;39640 47616;47617 47617 2 GRVFEVSLADLQNDEVAFR Unmodified 2164.0913 0.091281208 1305 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 0 1 By MS/MS By MS/MS 3.67 1.25 1 1 1 2 1 73.274 73.319 3 5.631E-58 23909 20211116_3431_TMUAki_TMT10x_P_F4 240.68 225.41 9439600 16056000 74524 13913000 9597900 19527000 11804000 11869000 12211000 12603000 12473000 8789100 14974000 768630 14429000 9257300 19374000 11871000 12476000 12414000 12278000 12024000 5 5 3 5 5 5 5 5 5 5 5 9439600 16056000 74524 13913000 9597900 19527000 11804000 11869000 12211000 12603000 12473000 8789100 14974000 768630 14429000 9257300 19374000 11871000 12476000 12414000 12278000 12024000 5 5 3 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1408900000 1408900000 0 7393 1305 6891 39641;39642;39643 47618;47619;47620;47621;47622;47623 47618 6 GRVFEVSLADLQNDEVAFRK Unmodified 2292.1862 0.18624423 1305 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 0 2 By MS/MS By MS/MS 6.58 0.954 2 3 5 2 7 5 67.22 67.426 3;4;5 1.8921E-80 22384 20211116_3435_TMUAki_TMT10x_P_F7 308.02 279.15 144720000 246440000 864800 237020000 157500000 176790000 154550000 102070000 125700000 128420000 158330000 134750000 229920000 12616000 241560000 150970000 182140000 156030000 108330000 130300000 124340000 151720000 19 19 14 19 19 19 19 19 19 19 19 68777000 115770000 457740 110020000 61037000 108750000 71595000 46926000 56934000 59741000 70697000 64040000 108010000 5824300 112630000 58805000 109480000 71616000 51215000 59051000 57818000 67773000 9 9 7 9 9 9 9 9 9 9 9 75943000 130660000 407060 127000000 96465000 68038000 82960000 55139000 68768000 68680000 87631000 70712000 121910000 6792100 128940000 92169000 72659000 84416000 57118000 71250000 66519000 83950000 10 10 7 10 10 10 10 10 10 10 10 35958000000 19231000000 16726000000 7394 1305 6892 39644;39645;39646;39647;39648;39649;39650;39651;39652;39653;39654;39655 47624;47625;47626;47627;47628;47629;47630;47631;47632;47633;47634;47635;47636;47637;47638;47639;47640;47641;47642 47628 19 GRVNFDDYTVNLGGLK Unmodified 1766.8951 0.89514758 1525 Q06210;Q06210-2 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes no 0 0 0 1 By MS/MS By MS/MS 7.75 0.433 1 3 2 2 49.156 49.056 3;4 9.8863E-22 19233 20211116_3436_TMUAki_TMT10x_P_F8 148.57 132.45 1220900 2145600 0 2110700 1337900 1127500 1482100 1384700 1386900 1602500 1669200 1136700 2001900 92319 2141100 1285800 1215100 1492900 1401400 1425100 1556200 1601500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1220900 2145600 0 2110700 1337900 1127500 1482100 1384700 1386900 1602500 1669200 1136700 2001900 92319 2141100 1285800 1215100 1492900 1401400 1425100 1556200 1601500 1 1 0 1 1 1 1 1 1 1 1 110290000 0 110290000 7395 1525 6893 39656;39657;39658;39659 47643;47644;47645;47646 47643 4 GRVPYPGMVNR Unmodified 1244.6448 0.64481032 645 P12931-2;P12931;P07947 SRC;YES1 Proto-oncogene tyrosine-protein kinase Src;Tyrosine-protein kinase Yes yes no 0 0 0 1 By MS/MS 2 0 1 1 33.465 33.242 3 0.044071 8804 20211116_3429_TMUAki_TMT10x_P_F2 47.977 25.079 432680 668000 16566 689580 799050 817700 506880 418210 462770 390370 561170 403000 623390 56443 703880 759820 816140 528060 444540 476210 382410 538300 1 1 1 1 1 1 1 1 1 1 1 432680 668000 16566 689580 799050 817700 506880 418210 462770 390370 561170 403000 623390 56443 703880 759820 816140 528060 444540 476210 382410 538300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23827000 23827000 0 7396 645 6894 39660 47647 47647 1 GRVQGLLEEEAAAR Unmodified 1497.79 0.78995423 2016 Q6SPF0 SAMD1 Atherin yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.894 2 1 2 2 3 41.123 41.041 3 4.056E-24 13529 20211116_3441_TMUAki_TMT10x_S_F3 196.48 180.34 5477000 8959700 102010 9782900 6556300 5829000 5768500 7117300 7209100 6308200 8039600 5100300 8363500 556060 9862900 6272300 6211000 5937000 7147100 7300400 6194300 7729800 7 7 5 7 7 7 7 7 7 7 7 861870 1296500 27987 1359600 1985800 1648300 1207500 1029700 1035800 930490 1281300 802700 1210000 113280 1386900 1886200 1647500 1260200 1075200 1070000 912860 1228400 1 1 1 1 1 1 1 1 1 1 1 4615100 7663300 74020 8423300 4570500 4180700 4560900 6087600 6173200 5377700 6758300 4297600 7153500 442780 8476000 4386100 4563500 4676800 6071900 6230400 5281400 6501400 6 6 4 6 6 6 6 6 6 6 6 463290000 189540000 273750000 7397 2016 6895 39661;39662;39663;39664;39665 47648;47649;47650;47651;47652;47653;47654;47655 47652 8 GRVVYENGVFMCAEGTGK Oxidation (M) 1988.9084 0.90843116 2617 Q9BPU6 DPYSL5 Dihydropyrimidinase-related protein 5 yes yes 0 0 1 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 44.118 44.439 3 3.5028E-12 11539 20211116_3445_TMUAki_TMT10x_S_F6 134.08 122.64 6751800 10945000 126650 12880000 9537400 10661000 6208400 10907000 10599000 9605500 10205000 6287400 10220000 706680 12969000 9068200 11003000 6607400 11038000 10577000 9434900 9856600 6 6 4 6 6 6 6 6 6 6 6 2578100 4280200 79790 4971200 6439300 7366800 3775300 3883600 3798900 3572200 3844600 2401000 3996400 342180 5058500 6112200 7278800 3969500 4115100 3865300 3501600 3707300 2 2 2 2 2 2 2 2 2 2 2 4173700 6664400 46856 7908300 3098000 3293900 2433100 7023500 6800200 6033300 6360400 3886400 6223200 364500 7910900 2956000 3724000 2637900 6923200 6711400 5933300 6149200 4 4 2 4 4 4 4 4 4 4 4 1134000000 821050000 312950000 7398 2617 6896 39666;39667;39668;39669 47656;47657;47658;47659;47660;47661 47659 2865 6 GRYEITAEDSQEK Unmodified 1524.7056 0.70561548 2828 Q9H814 PHAX Phosphorylated adapter RNA export protein yes yes 0 0 0 1 By MS/MS 3 0 1 1 33.348 33.108 3 3.9958E-06 10275 20211116_3441_TMUAki_TMT10x_S_F3 107.97 91.228 303440 503900 50.612 525400 297010 254990 353590 257790 322250 246180 402880 282530 470270 25114 530430 286210 276510 354730 261620 332070 240910 386140 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 303440 503900 50.612 525400 297010 254990 353590 257790 322250 246180 402880 282530 470270 25114 530430 286210 276510 354730 261620 332070 240910 386140 1 1 1 1 1 1 1 1 1 1 1 20831000 0 20831000 7399 2828 6897 39670 47662 47662 1 GRYGLFPANYVELRQ Unmodified 1781.9213 0.92130275 1699 Q14247;Q14247-3 CTTN Src substrate cortactin yes no 0 0 0 2 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 57.142 56.859 3 4.7014E-24 17064 20211116_3440_TMUAki_TMT10x_S_F2 195.6 156.07 3430300 6305300 121870 6850200 4795300 5308600 4203200 5237500 4643300 4615900 4830600 3194900 5885600 417090 6926800 4590500 5501600 4308100 5310200 4711100 4533800 4654100 2 2 2 2 2 2 2 2 2 2 2 1325600 2444700 45489 2708800 2062600 2892800 1905700 1991200 1795400 1711300 1747800 1234600 2282100 162620 2747500 1976500 2915400 1937800 2061600 1829700 1682900 1687500 1 1 1 1 1 1 1 1 1 1 1 2104700 3860700 76380 4141400 2732700 2415900 2297500 3246400 2847900 2904600 3082900 1960200 3603400 254470 4179300 2613900 2586200 2370200 3248500 2881500 2850900 2966700 1 1 1 1 1 1 1 1 1 1 1 814990000 174950000 640040000 7400 1699 6898 39671;39672;39673 47663;47664 47664 2 GRYIPPHLR Unmodified 1107.6301 0.63014653 104 O00571;O15523;O15523-2;O15523-3 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 0 1 By MS/MS By MS/MS 2.5 1.12 1 1 1 1 3 1 29.509 29.396 3 0.029457 8730 20211116_3441_TMUAki_TMT10x_S_F3 54.608 39.169 1682500 2971000 0 2094700 3945900 5988600 3462200 3711000 3900100 3674600 3285100 1566000 2769000 104550 2257000 3767000 5809400 3550700 3887000 3926700 3590300 3188000 3 3 0 3 3 3 3 3 3 3 3 1485000 2624000 0 1784500 3743100 5797500 3246700 3513400 3655100 3478300 3024700 1382100 2445300 88562 1939800 3572300 5607300 3331800 3686400 3678200 3398500 2937300 2 2 0 2 2 2 2 2 2 2 2 197480 347070 0 310170 202800 191050 215570 197610 245040 196250 260370 183870 323710 15993 317250 194750 202120 218910 200540 248540 191720 250690 1 1 0 1 1 1 1 1 1 1 1 29753000 19915000 9837900 7401 104 6899 39674;39675;39676;39677 47665;47666;47667 47667 3 GSADNVTVMVVR Oxidation (M) 1262.6289 0.62888548 2771 Q9H0C8 ILKAP Integrin-linked kinase-associated serine/threonine phosphatase 2C yes yes 0 0 1 0 By MS/MS By MS/MS 4 0 2 1 1 36.174 36.289 2 0.00059407 9283 20211116_3442_TMUAki_TMT10x_S_F4 88.392 61.79 89547 148040 0 186640 89644 68326 85487 62711 75271 63711 118740 83366 138280 6025.6 185910 85759 76778 86614 64074 78565 62183 113200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 89547 148040 0 186640 89644 68326 85487 62711 75271 63711 118740 83366 138280 6025.6 185910 85759 76778 86614 64074 78565 62183 113200 1 1 0 1 1 1 1 1 1 1 1 3806400 0 3806400 7402 2771 6900 39678;39679 47668;47669 47669 2940 2 GSAFAIGSDGLCCQSR Unmodified 1684.7297 0.72973851 2334 Q92499 DDX1 ATP-dependent RNA helicase DDX1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.35 1.23 1 4 4 4 4 9 8 49.639 49.849 2;3 4.5799E-124 13434 20211116_3444_TMUAki_TMT10x_S_F5 385.95 366.71 82841000 142880000 1095400 165830000 105650000 122970000 75271000 104010000 102600000 95370000 113310000 77136000 133410000 7603000 166910000 100570000 127490000 78785000 106450000 103560000 93499000 108980000 19 19 12 19 19 19 19 19 19 19 19 37432000 63426000 616080 73385000 71879000 89116000 48592000 47677000 49043000 45668000 51239000 34856000 59220000 3960600 74397000 68360000 88884000 50520000 50506000 49951000 44685000 49361000 9 9 6 9 9 9 9 9 9 9 9 45408000 79454000 479350 92440000 33774000 33855000 26680000 56334000 53555000 49702000 62074000 42280000 74188000 3642400 92511000 32209000 38608000 28265000 55943000 53609000 48815000 59616000 10 10 6 10 10 10 10 10 10 10 10 34216000000 17714000000 16502000000 7403 2334 6901 39680;39681;39682;39683;39684;39685;39686;39687;39688;39689;39690;39691;39692;39693;39694;39695;39696 47670;47671;47672;47673;47674;47675;47676;47677;47678;47679;47680;47681;47682;47683;47684;47685;47686;47687;47688;47689 47683 20 GSAITGPVAK Unmodified 899.50763 0.50763136 1369 P62829 RPL23 60S ribosomal protein L23 yes yes 0 0 0 0 By MS/MS By MS/MS 6.4 0.917 2 3 4 1 8 2 34.27 34.45 2;3 2.948E-08 7291 20211116_3434_TMUAki_TMT10x_P_F6 164.68 126.39 3317100 5514900 58751 4846800 4196900 5051800 3729200 2632100 2899100 2816000 3876000 3088900 5143500 328570 4994800 4015500 5079400 3781400 2803800 3020300 2742700 3708800 14 14 8 14 14 14 14 14 14 14 14 2808000 4600900 58751 4035100 3677400 4629600 3139100 2170000 2356100 2351200 3194100 2614900 4291000 287180 4165300 3515700 4624400 3188000 2335800 2460900 2288900 3055300 13 13 8 13 13 13 13 13 13 13 13 509050 914000 0 811690 519450 422170 590090 462160 542990 464780 681830 473960 852480 41385 829460 499780 455010 593400 467950 559390 453820 653440 1 1 0 1 1 1 1 1 1 1 1 179790000 154190000 25594000 7404 1369 6902 39697;39698;39699;39700;39701;39702;39703;39704;39705;39706 47690;47691;47692;47693;47694;47695;47696;47697;47698;47699;47700;47701;47702;47703;47704 47692 15 GSAPPGPVPEGSIR Unmodified 1319.6834 0.68336389 1432 P78417;P78417-2 GSTO1 Glutathione S-transferase omega-1 yes no 0 0 0 0 By MS/MS 5 0 1 1 35.575 35.75 2 3.5608E-09 7809 20211116_3444_TMUAki_TMT10x_S_F5 107.97 67.698 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7405 1432 6903 39707 47705 47705 1 GSDCGIVNVNIPTSGAEIGGAFGGEK Unmodified 2505.1806 0.1805665 1098 P49419-2;P49419;P49419-4 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS 5.11 1.1 1 1 4 2 1 3 6 72.025 72.023 2;3;4 4.7723E-49 22578 20211116_3444_TMUAki_TMT10x_S_F5 208.85 181.82 33630000 57228000 409100 53391000 41182000 51932000 43454000 34090000 31771000 37332000 42339000 31313000 53385000 2906400 54717000 39545000 52594000 43597000 35658000 33208000 36327000 40516000 13 13 5 13 13 13 13 13 13 13 13 17579000 28930000 161270 26614000 18414000 30956000 21508000 16511000 15096000 18354000 21140000 16368000 26986000 1448900 27380000 17732000 30944000 21457000 17571000 15853000 17850000 20206000 5 5 2 5 5 5 5 5 5 5 5 16051000 28298000 247830 26777000 22768000 20975000 21945000 17579000 16675000 18978000 21199000 14946000 26399000 1457600 27338000 21813000 21650000 22140000 18086000 17355000 18477000 20310000 8 8 3 8 8 8 8 8 8 8 8 9151800000 2507100000 6644600000 7406 1098 6904 39708;39709;39710;39711;39712;39713;39714;39715;39716 47706;47707;47708;47709;47710;47711;47712;47713;47714;47715;47716;47717;47718;47719;47720 47717 15 GSDFDCELR Unmodified 1097.4448 0.44477311 1329;1330 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 0 By MS/MS By MS/MS 3.67 2.49 2 2 2 1 1 1 6 3 37.726 37.743 2 6.2991E-06 9324 20211116_3428_TMUAki_TMT10x_P_F1 171.09 160.21 7573300 10347000 28032 17037000 30540000 13501000 9183600 10404000 13790000 7501700 14340000 7051400 9679700 933310 16855000 28745000 13903000 10575000 10648000 13847000 7446200 13816000 10 10 4 10 10 10 10 10 10 10 10 4119700 5378400 25777 9071900 27374000 10901000 6012800 5459300 7383100 4074200 7509600 3835900 5032500 668870 9021300 25711000 10870000 7258400 5783800 7455600 4036100 7240400 7 7 3 7 7 7 7 7 7 7 7 3453600 4968400 2255.6 7965400 3165700 2600600 3170800 4945000 6406600 3427600 6830400 3215500 4647200 264440 7834100 3034400 3032900 3316200 4864000 6391100 3410100 6575900 3 3 1 3 3 3 3 3 3 3 3 2207300000 1645000000 562390000 7407 1329;1330 6905 39717;39718;39719;39720;39721;39722;39723;39724;39725 47721;47722;47723;47724;47725;47726;47727;47728;47729;47730 47721 10 GSDIIIVGR Unmodified 928.53418 0.53418046 618 P11172;P11172-2;P11172-3;P11172-4 UMPS Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase yes no 0 0 0 0 By MS/MS 4 0 1 1 44.006 44.106 2 0.0033516 12009 20211116_3431_TMUAki_TMT10x_P_F4 79.059 44.127 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7408 618 6906 39726 47731 47731 1 GSDQAIITLR Unmodified 1072.5877 0.58767259 939 P35613;P35613-2;P35613-4;P35613-3 BSG Basigin yes no 0 0 0 0 By MS/MS By MS/MS 3.57 1.18 2 1 2 2 4 3 43.674 43.691 2 2.4116E-08 12150 20211116_3442_TMUAki_TMT10x_S_F4 167.67 131.79 27484000 44364000 153800 46027000 53437000 51785000 30148000 33121000 32233000 27771000 34760000 25588000 41403000 2359400 46924000 50634000 51980000 31863000 34457000 32790000 27343000 33454000 7 7 4 7 7 7 7 7 7 7 7 22230000 36263000 135730 37796000 47871000 46906000 24730000 26645000 26131000 22167000 27806000 20696000 33843000 1947200 38586000 45302000 46768000 26338000 27980000 26582000 21834000 26771000 5 5 3 5 5 5 5 5 5 5 5 5254000 8101300 18069 8231300 5566100 4878500 5418600 6475500 6102200 5603500 6954500 4891800 7559800 412140 8337900 5331500 5212600 5525200 6477200 6208300 5508600 6682400 2 2 1 2 2 2 2 2 2 2 2 2059800000 1384100000 675780000 7409 939 6907 39727;39728;39729;39730;39731;39732;39733 47732;47733;47734;47735;47736;47737;47738;47739;47740 47739 9 GSDVIIMLVGNK Unmodified 1244.6799 0.67985842 742;743 P20340;Q9NRW1;Q9NRW1-2;P20340-2;P20340-4 RAB6A;RAB6B Ras-related protein Rab-6A;Ras-related protein Rab-6B no no 0 0 0 0 By MS/MS 8 0 1 1 77.135 77.144 2 0.00045322 25230 20211116_3436_TMUAki_TMT10x_P_F8 86.882 66.891 9828200 15883000 11112 14652000 10881000 19052000 12846000 10228000 8438200 10332000 11279000 9151100 14816000 839930 15100000 10484000 18940000 12791000 10848000 8878100 10086000 10793000 1 1 1 1 1 1 1 1 1 1 1 9828200 15883000 11112 14652000 10881000 19052000 12846000 10228000 8438200 10332000 11279000 9151100 14816000 839930 15100000 10484000 18940000 12791000 10848000 8878100 10086000 10793000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 395130000 395130000 0 7410 742;743 6908 39734 47741 47741 1 GSDVIIMLVGNK Oxidation (M) 1260.6748 0.67477304 742;743 P20340;Q9NRW1;Q9NRW1-2;P20340-2;P20340-4 RAB6A;RAB6B Ras-related protein Rab-6A;Ras-related protein Rab-6B no no 0 0 1 0 By MS/MS 8 0 1 1 68.526 68.627 3 0.06722 21716 20211116_3436_TMUAki_TMT10x_P_F8 42.095 8.6866 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7411 742;743 6908 39735 47742 47742 851 1 GSDVIIMLVGNKTDLADKR Oxidation (M) 2060.0936 0.093589394 742;743 P20340;Q9NRW1;Q9NRW1-2;P20340-2;P20340-4 RAB6A;RAB6B Ras-related protein Rab-6A;Ras-related protein Rab-6B no no 0 0 1 2 By MS/MS By MS/MS 1 0 2 1 1 65.801 65.682 4 0.0072452 20568 20211116_3428_TMUAki_TMT10x_P_F1 53.278 40.048 5126400 9879400 230210 8274300 7831800 13894000 8059700 14135000 12418000 11080000 9298500 4774900 9212500 677450 8638600 7529200 13813000 8298300 14268000 12331000 10947000 9066500 2 2 2 2 2 2 2 2 2 2 2 2648000 5208700 59844 3615600 4385600 10648000 5439800 8350600 6842800 6352900 5431600 2466000 4854300 299650 3906200 4235200 10362000 5506200 8546500 6849900 6286900 5283400 1 1 1 1 1 1 1 1 1 1 1 2478400 4670700 170370 4658700 3446300 3245900 2619900 5784600 5574900 4726800 3866800 2308900 4358200 377810 4732400 3294000 3450900 2792200 5721600 5481600 4660000 3783100 1 1 1 1 1 1 1 1 1 1 1 683790000 367900000 315900000 7412 742;743 6909 39736;39737 47743;47744 47743 851 2 GSDVIIMLVGNKTDLADKR Unmodified 2044.0987 0.098674772 742;743 P20340;Q9NRW1;Q9NRW1-2;P20340-2;P20340-4 RAB6A;RAB6B Ras-related protein Rab-6A;Ras-related protein Rab-6B no no 0 0 0 2 By MS/MS 2 0 1 1 71.148 70.891 4 0.011957 24037 20211116_3429_TMUAki_TMT10x_P_F2 53.278 38.806 2312500 3518100 35226 3282200 2402500 4179500 2994300 2336700 2222700 2590800 2954400 2153400 3281900 225810 3378500 2320600 4161000 2982400 2476400 2321000 2519800 2827300 1 1 1 1 1 1 1 1 1 1 1 2312500 3518100 35226 3282200 2402500 4179500 2994300 2336700 2222700 2590800 2954400 2153400 3281900 225810 3378500 2320600 4161000 2982400 2476400 2321000 2519800 2827300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 551460000 551460000 0 7413 742;743 6909 39738 47745 47745 1 GSELEITLTR Unmodified 1117.5979 0.59790293 1002 P41252 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 49.844 49.745 2 3.0088E-08 14164 20211116_3440_TMUAki_TMT10x_S_F2 164.34 118.63 45843000 72441000 141480 72000000 64101000 80856000 59359000 73051000 71811000 67065000 66307000 42682000 67593000 3728800 73616000 61322000 81649000 60844000 74488000 72315000 65746000 64134000 10 10 5 10 10 10 10 10 10 10 10 26723000 40733000 55807 38600000 40610000 60628000 37451000 46368000 46549000 41685000 38290000 24879000 38001000 2135800 39858000 38842000 60084000 38435000 47723000 46664000 40905000 37192000 5 5 2 5 5 5 5 5 5 5 5 19120000 31708000 85672 33401000 23490000 20228000 21908000 26683000 25262000 25380000 28017000 17803000 29593000 1593000 33758000 22481000 21565000 22409000 26765000 25651000 24841000 26942000 5 5 3 5 5 5 5 5 5 5 5 4457700000 2785100000 1672600000 7414 1002 6910 39739;39740;39741;39742;39743;39744;39745;39746 47746;47747;47748;47749;47750;47751;47752;47753;47754;47755 47753 10 GSELQLPFQACLK Unmodified 1489.7599 0.75989966 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 By MS/MS By MS/MS 7.57 0.495 3 4 3 4 71.074 71.173 2;3 2.6432E-24 22780 20211116_3436_TMUAki_TMT10x_P_F8 197.79 169.78 31612000 51808000 178270 49385000 35181000 42888000 35017000 29132000 25238000 30295000 35915000 29433000 48333000 2600200 50455000 33725000 43783000 35225000 30349000 26482000 29539000 34315000 7 7 4 7 7 7 7 7 7 7 7 14211000 21410000 0 20644000 14481000 25737000 16484000 11910000 10732000 12905000 15671000 13231000 19975000 963940 21191000 13921000 25594000 16437000 12837000 11344000 12563000 14964000 2 2 0 2 2 2 2 2 2 2 2 17401000 30398000 178270 28741000 20700000 17151000 18533000 17223000 14506000 17389000 20244000 16203000 28358000 1636200 29264000 19804000 18189000 18787000 17512000 15137000 16976000 19351000 5 5 4 5 5 5 5 5 5 5 5 4217800000 1621900000 2595900000 7415 1997 6911 39747;39748;39749;39750;39751;39752;39753 47756;47757;47758;47759;47760;47761;47762;47763 47758 8 GSELQNYFTK Unmodified 1185.5666 0.5666028 1303 P61221 ABCE1 ATP-binding cassette sub-family E member 1 yes yes 0 0 0 0 By MS/MS 7 0 1 1 55.348 56.077 2 0.00047751 17754 20211116_3435_TMUAki_TMT10x_P_F7 107.51 80.384 5543200 7796600 0 10196000 12750000 14196000 7998000 8026600 8790800 7287100 7517600 5160100 7284100 417050 10292000 12097000 14077000 8385800 8450100 8863300 7147500 7291400 1 1 0 1 1 1 1 1 1 1 1 5543200 7796600 0 10196000 12750000 14196000 7998000 8026600 8790800 7287100 7517600 5160100 7284100 417050 10292000 12097000 14077000 8385800 8450100 8863300 7147500 7291400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 513330000 513330000 0 7416 1303 6912 39754 47764 47764 1 GSFAGIEDDADEALEISQAQLLFENR Unmodified 2837.3355 0.33554682 2164 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 0 0 0 0 By MS/MS 1 0 1 1 81.058 81.058 3 5.8185E-39 26723 20211116_3428_TMUAki_TMT10x_P_F1 184.34 169.08 924430 1227900 0 1160700 707900 1316600 912010 792570 668730 692000 950610 860570 1145500 52043 1191200 682500 1319900 906890 829270 700960 679990 908290 1 1 0 1 1 1 1 1 1 1 1 924430 1227900 0 1160700 707900 1316600 912010 792570 668730 692000 950610 860570 1145500 52043 1191200 682500 1319900 906890 829270 700960 679990 908290 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1221700000 1221700000 0 7417 2164 6913 39755 47765 47765 1 GSFGELALMYNTPR Oxidation (M) 1570.745 0.74497787 886;660 P31323;P13861;P13861-2 PRKAR2B;PRKAR2A cAMP-dependent protein kinase type II-beta regulatory subunit;cAMP-dependent protein kinase type II-alpha regulatory subunit no no 0 0 1 0 By MS/MS By MS/MS 7.25 0.433 3 1 2 2 60.334 60.745 2;3 0.00010507 19668 20211116_3435_TMUAki_TMT10x_P_F7 98.73 80.998 5605700 10515000 68235 9966300 7404800 11670000 7118400 8601400 8661400 8579200 7534400 5219500 9809100 502470 10231000 7093700 11715000 7283300 8899500 8704000 8379800 7303100 2 2 1 2 2 2 2 2 2 2 2 3021000 5856600 0 5233700 4542500 8456800 4113400 5296100 5367100 5250100 4316400 2812400 5462500 220700 5431400 4341500 8345400 4233600 5542900 5367900 5129400 4196400 1 1 0 1 1 1 1 1 1 1 1 2584700 4658000 68235 4732600 2862300 3213300 3005100 3305300 3294300 3329100 3218000 2407100 4346700 281770 4800000 2752200 3369300 3049700 3356700 3336100 3250400 3106700 1 1 1 1 1 1 1 1 1 1 1 1715100000 808520000 906560000 7418 886;660 6914 39756;39757;39758;39759 47766;47767;47768 47766 721 3 GSFMLGLETHDR Oxidation (M) 1377.6347 0.63469914 2377 Q92905 COPS5 COP9 signalosome complex subunit 5 yes yes 0 0 1 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 40.821 40.953 3 0.00018698 11203 20211116_3442_TMUAki_TMT10x_S_F4 84.999 67.563 1491000 2186400 155.33 2231300 1556500 1499400 1330000 1417100 1450500 1367100 1828800 1387800 2040300 69030 2262200 1483100 1570800 1364600 1443500 1483800 1337300 1752500 2 2 1 2 2 2 2 2 2 2 2 290930 468380 155.33 531360 605070 634890 359510 314880 346110 308050 402010 270890 437280 28665 539170 574000 633210 377090 336100 354680 301140 386080 1 1 1 1 1 1 1 1 1 1 1 1200000 1718000 0 1699900 951400 864510 970470 1102200 1104400 1059100 1426800 1116900 1603100 40365 1723000 909110 937580 987540 1107400 1129100 1036100 1366400 1 1 0 1 1 1 1 1 1 1 1 322140000 40478000 281660000 7419 2377 6915 39760;39761 47769;47770 47770 2711 2 GSFMLGLETHDR Unmodified 1361.6398 0.63978452 2377 Q92905 COPS5 COP9 signalosome complex subunit 5 yes yes 0 0 0 0 By MS/MS 5 0 1 1 48.351 48.523 3 0.00078462 12931 20211116_3444_TMUAki_TMT10x_S_F5 74.987 65.3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7420 2377 6915 39762 47771 47771 1 GSFSEQGINEFLR Unmodified 1482.7103 0.71030693 1769 Q15084;Q15084-5;Q15084-3;Q15084-4;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 0 By MS/MS By MS/MS 4.44 1.26 1 4 4 4 5 10 8 64.067 64.012 2;3 5.2537E-78 20556 20211116_3442_TMUAki_TMT10x_S_F4 336.17 292.54 152750000 257640000 320090 247890000 185130000 206660000 175760000 150760000 154460000 160630000 192100000 142210000 240370000 10294000 252960000 177150000 211820000 178110000 156400000 159400000 156470000 184150000 23 23 7 23 23 23 23 23 23 23 23 60336000 98802000 293210 97949000 64780000 105530000 72939000 59875000 55977000 58499000 71251000 56175000 92189000 4589900 100100000 62288000 106010000 73033000 63140000 58231000 57190000 68260000 11 11 5 11 11 11 11 11 11 11 11 92415000 158840000 26882 149940000 120350000 101130000 102820000 90887000 98479000 102130000 120850000 86037000 148180000 5704600 152860000 114860000 105810000 105080000 93261000 101170000 99284000 115890000 12 12 2 12 12 12 12 12 12 12 12 13735000000 6042500000 7692100000 7421 1769 6916 39763;39764;39765;39766;39767;39768;39769;39770;39771;39772;39773;39774;39775;39776;39777;39778;39779;39780 47772;47773;47774;47775;47776;47777;47778;47779;47780;47781;47782;47783;47784;47785;47786;47787;47788;47789;47790;47791;47792;47793;47794;47795;47796;47797;47798 47789 27 GSGIFDESTPVQTR Unmodified 1492.7158 0.71578623 2834 Q9H910;Q9H910-3;Q9H910-2 HN1L Hematological and neurological expressed 1-like protein yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 4 4 4 4 45.645 45.617 2;3 2.1685E-60 12967 20211116_3442_TMUAki_TMT10x_S_F4 303.91 278.62 9828900 15866000 80906 20933000 17887000 16599000 10243000 14504000 16090000 11622000 14753000 9151600 14824000 912860 20933000 16958000 17130000 10970000 14766000 16065000 11470000 14273000 7 7 3 7 7 7 7 7 7 7 7 5656300 8858800 59642 11260000 14926000 14045000 7752800 7852600 8622100 6300000 7836400 5266600 8275200 602760 11360000 14132000 13997000 8266000 8250000 8705600 6216800 7583800 4 4 2 4 4 4 4 4 4 4 4 4172700 7007300 21264 9672700 2960700 2553600 2490100 6651600 7467700 5322400 6916900 3885000 6548500 310090 9573100 2825800 3132600 2704500 6516300 7359700 5252900 6689600 3 3 1 3 3 3 3 3 3 3 3 2175400000 1393200000 782220000 7422 2834 6917 39781;39782;39783;39784;39785;39786;39787;39788 47799;47800;47801;47802;47803;47804;47805;47806 47805 8 GSGNLEAIHIIK Unmodified 1250.6983 0.69828568 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 47.971 48.096 3 3.5763E-06 12643 20211116_3434_TMUAki_TMT10x_P_F6 110.8 45.227 7009500 10597000 88738 15502000 12267000 11222000 7134500 7392900 7901400 6529400 9176700 6527000 9906700 711760 15405000 11636000 11610000 7528900 7684000 8050000 6412600 8812900 3 3 2 3 3 3 3 3 3 3 3 4633400 7029700 49373 9929600 10671000 9674300 5420800 5086000 5150500 4494700 6042400 4314400 6570300 489010 9921200 10101000 9768200 5764700 5385000 5283300 4414100 5801300 2 2 1 2 2 2 2 2 2 2 2 2376000 3567500 39365 5572700 1595800 1547600 1713700 2306900 2750800 2034800 3134300 2212600 3336300 222750 5483300 1535400 1841900 1764300 2299000 2766700 1998500 3011700 1 1 1 1 1 1 1 1 1 1 1 758040000 454620000 303420000 7423 1429 6918 39789;39790;39791 47807;47808;47809;47810 47808 4 GSGNLEAIHIIKK Unmodified 1378.7932 0.79324869 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 1 By MS/MS By MS/MS 5 3.29 2 1 2 3 2 44.136 44.217 4 6.7076E-08 11324 20211116_3447_TMUAki_TMT10x_S_F8 121.31 105.17 4009800 6156900 34006 7597800 6298100 5202300 4033800 3973100 4379900 3832500 5332600 3733800 5750400 396180 7613400 5984000 5419900 4220700 4097400 4474500 3748800 5114700 4 4 4 4 4 4 4 4 4 4 4 1716300 2531200 3394.1 3112400 4233800 3101900 1817900 1392900 1562100 1452700 2063900 1598000 2364100 180710 3133900 3999000 3122200 1962400 1504300 1618100 1416300 1975400 1 1 1 1 1 1 1 1 1 1 1 2293500 3625600 30612 4485400 2064300 2100400 2215900 2580200 2817800 2379800 3268800 2135700 3386300 215470 4479400 1985000 2297600 2258400 2593100 2856300 2332500 3139300 3 3 3 3 3 3 3 3 3 3 3 689780000 513050000 176730000 7424 1429 6919 39792;39793;39794;39795;39796 47811;47812;47813;47814 47814 4 GSGSQSSVPSVDQFTGVGIR Unmodified 1963.9599 0.95993268 3219 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 6.25 0.433 3 1 3 1 56.9 57.134 2;3 5.7049E-69 16366 20211116_3434_TMUAki_TMT10x_P_F6 253.06 231.02 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7425 3219 6920 39797;39798;39799;39800 47815;47816;47817;47818 47816 4 GSGTAEVELK Unmodified 989.50294 0.50293991 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 By MS/MS By MS/MS 3.24 1.27 2 5 3 9 1 1 7 14 35.898 35.874 2;3 4.8658E-10 10596 20211116_3429_TMUAki_TMT10x_P_F2 195.79 140.26 11515000 17289000 18028 17721000 12794000 12783000 11960000 8225200 8833200 8289600 12389000 10721000 16134000 892020 17974000 12242000 13225000 12078000 8594800 9249300 8093400 11841000 21 21 6 21 21 21 21 21 21 21 21 5836500 8396800 0 8576100 7058600 8326700 5850500 3925100 4256100 3980600 6002600 5434000 7835800 461030 8732700 6735200 8399100 5948200 4214600 4461600 3885300 5736400 4 4 0 4 4 4 4 4 4 4 4 5678900 8892000 18028 9145200 5735400 4456800 6109600 4300100 4577100 4309100 6386800 5287400 8298100 430990 9241600 5506600 4826000 6130300 4380300 4787700 4208100 6105000 17 17 6 17 17 17 17 17 17 17 17 855510000 440800000 414720000 7426 670;671 6921 39801;39802;39803;39804;39805;39806;39807;39808;39809;39810;39811;39812;39813;39814;39815;39816;39817;39818;39819;39820;39821 47819;47820;47821;47822;47823;47824;47825;47826;47827;47828;47829;47830;47831;47832;47833;47834;47835;47836;47837;47838;47839;47840;47841;47842;47843;47844;47845 47820 27 GSGTAEVELKK Unmodified 1117.5979 0.59790293 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 1 By MS/MS By MS/MS 4.45 0.988 2 4 3 2 4 7 35.929 35.991 3;4 2.0872E-07 4517 20211116_3442_TMUAki_TMT10x_S_F4 106.79 60.323 40001000 65166000 1056600 62549000 45073000 55751000 43721000 28451000 33236000 30153000 44017000 37252000 60797000 4331400 63894000 43246000 56602000 44094000 30356000 34653000 29379000 42128000 10 10 6 10 10 10 10 10 10 10 10 29387000 45761000 643460 44154000 33683000 44923000 31631000 20249000 23913000 20642000 31172000 27367000 42694000 3088000 45169000 32283000 45163000 31953000 21845000 24923000 20143000 29846000 6 6 4 6 6 6 6 6 6 6 6 10614000 19404000 413160 18396000 11391000 10828000 12089000 8202100 9323000 9511500 12845000 9885100 18103000 1243400 18725000 10963000 11439000 12141000 8511100 9730500 9235500 12282000 4 4 2 4 4 4 4 4 4 4 4 4460200000 3633600000 826630000 7427 670;671 6922 39822;39823;39824;39825;39826;39827;39828;39829;39830;39831;39832 47846;47847;47848;47849;47850;47851;47852;47853;47854;47855;47856;47857;47858;47859 47854 14 GSGVTTYSVHPGTVQSELVR Unmodified 2073.0491 0.049082043 2270 Q8TC12;Q8TC12-2 RDH11 Retinol dehydrogenase 11 yes no 0 0 0 0 By MS/MS 3.5 2.5 1 1 2 42.305 42.47 3 5.0455E-13 10773 20211116_3445_TMUAki_TMT10x_S_F6 130.56 104.41 196330 366110 14888 455160 174140 206450 161240 388310 390650 336690 348740 182920 341950 29841 454330 167550 229740 171330 384080 385890 330950 337720 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 196330 366110 14888 455160 174140 206450 161240 388310 390650 336690 348740 182920 341950 29841 454330 167550 229740 171330 384080 385890 330950 337720 1 1 1 1 1 1 1 1 1 1 1 38184000 0 38184000 7428 2270 6923 39833;39834 47860;47861 47861 2 GSHTDAPDTATGNCLLQR Unmodified 1912.8697 0.86973747 3068 Q9P2R3;Q9P2R3-2;Q9P2R3-4 ANKFY1 Rabankyrin-5 yes no 0 0 0 0 By MS/MS 4 0 1 1 33.363 33.389 3 1.4076E-07 7721 20211116_3431_TMUAki_TMT10x_P_F4 103.39 93.986 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7429 3068 6924 39835 47862 47862 1 GSIFVVFDSIESAK Unmodified 1497.7715 0.7715102 509 P05455 SSB Lupus La protein yes yes 0 0 0 0 By MS/MS By MS/MS 7.17 0.799 3 4 5 7 5 80.592 80.597 2;3 3.0653E-45 28229 20211116_3446_TMUAki_TMT10x_S_F7 276.95 223.19 46124000 81223000 351250 65370000 52174000 79315000 62135000 58161000 60423000 66297000 64789000 42946000 75731000 3991200 68017000 50282000 79466000 62453000 60445000 61700000 64414000 62364000 14 14 7 14 14 14 14 14 14 14 14 23354000 41248000 304990 33523000 25578000 53032000 29420000 29659000 30860000 33827000 32285000 21746000 38460000 2078500 35037000 24630000 52296000 29685000 31460000 31383000 32865000 31100000 8 8 4 8 8 8 8 8 8 8 8 22770000 39976000 46263 31847000 26595000 26284000 32716000 28502000 29563000 32471000 32504000 21201000 37271000 1912700 32980000 25653000 27169000 32767000 28985000 30318000 31549000 31264000 6 6 3 6 6 6 6 6 6 6 6 9081900000 4593400000 4488500000 7430 509 6925 39836;39837;39838;39839;39840;39841;39842;39843;39844;39845;39846;39847 47863;47864;47865;47866;47867;47868;47869;47870;47871;47872;47873;47874;47875;47876 47873 14 GSIFVVFDSIESAKK Unmodified 1625.8665 0.86647322 509 P05455 SSB Lupus La protein yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.04 2 2 2 2 4 4 77.869 77.863 3 8.2744E-33 25535 20211116_3436_TMUAki_TMT10x_P_F8 196.95 164.22 85013000 146390000 1887600 117480000 99649000 145190000 113350000 110530000 115260000 122880000 117360000 79170000 136490000 9012400 122310000 96007000 145420000 114310000 114500000 117250000 119500000 113150000 8 8 8 8 8 8 8 8 8 8 8 32753000 53518000 910490 44590000 35214000 78782000 44157000 41281000 44944000 47631000 44028000 30503000 49905000 3598400 46631000 34045000 77306000 44347000 44054000 45656000 46257000 42501000 3 3 3 3 3 3 3 3 3 3 3 52261000 92867000 977130 72892000 64435000 66410000 69188000 69249000 70318000 75251000 73334000 48667000 86580000 5413900 75676000 61962000 68118000 69967000 70444000 71594000 73247000 70649000 5 5 5 5 5 5 5 5 5 5 5 11800000000 5225400000 6574800000 7431 509 6926 39848;39849;39850;39851;39852;39853;39854;39855 47877;47878;47879;47880;47881;47882;47883;47884;47885 47880 9 GSIIISPCVVCR Unmodified 1359.7003 0.70027629 2450 Q96EY1;Q96EY1-2;Q96EY1-3 DNAJA3 DnaJ homolog subfamily A member 3, mitochondrial yes no 0 0 0 0 By MS/MS 2 0 1 1 54.465 54.27 2 1.1787E-06 16051 20211116_3440_TMUAki_TMT10x_S_F2 106.4 70.986 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7432 2450 6927 39856 47886 47886 1 GSIPEFFHIMK Oxidation (M) 1320.6536 0.65364367 2930 Q9NRN7 AASDHPPT L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase yes yes 0 0 1 0 By MS/MS By MS/MS 6.25 3.03 1 3 2 2 61.2 61.387 3 4.7493E-06 18692 20211116_3436_TMUAki_TMT10x_P_F8 115.57 103.01 8803200 14357000 308040 14613000 12951000 22650000 11587000 11571000 11930000 12592000 11951000 8199000 13398000 1075000 15010000 12402000 22330000 11835000 12354000 12123000 12256000 11528000 2 2 2 2 2 2 2 2 2 2 2 8803200 14357000 308040 14613000 12951000 22650000 11587000 11571000 11930000 12592000 11951000 8199000 13398000 1075000 15010000 12402000 22330000 11835000 12354000 12123000 12256000 11528000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 806850000 806850000 0 7433 2930 6928 39857;39858;39859;39860 47887;47888;47889;47890;47891 47888 3028 5 GSIPEFFHIMK Unmodified 1304.6587 0.65872905 2930 Q9NRN7 AASDHPPT L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 68.287 68.094 3 5.8462E-05 21315 20211116_3428_TMUAki_TMT10x_P_F1 90.146 68.273 2196500 3720000 36277 3924700 2143000 1899000 2211300 1758500 1497600 1791800 2481000 2045400 3471900 215160 3959100 2058700 2056300 2217300 1796000 1589700 1748600 2362900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2196500 3720000 36277 3924700 2143000 1899000 2211300 1758500 1497600 1791800 2481000 2045400 3471900 215160 3959100 2058700 2056300 2217300 1796000 1589700 1748600 2362900 1 1 1 1 1 1 1 1 1 1 1 247640000 0 247640000 7434 2930 6928 39861;39862 47892;47893 47892 2 GSITISAEEIKDNR Unmodified 1531.7842 0.78420015 309 O75131 CPNE3 Copine-3 yes yes 0 0 0 1 By MS/MS By MS/MS 4.14 0.833 2 2 3 4 3 46.153 46.179 3 3.1089E-37 12007 20211116_3444_TMUAki_TMT10x_S_F5 239.75 208.32 12914000 20903000 151230 18748000 18774000 20402000 15342000 19323000 20228000 16746000 19491000 12025000 19497000 1243700 19303000 17921000 20658000 15893000 19624000 20338000 16462000 18825000 6 6 5 6 6 6 6 6 6 6 6 4665300 7598400 16216 6668900 9555200 11362000 6405500 7383300 7285400 6052700 7226900 4344000 7086700 470390 6939200 9083800 11196000 6689300 7667800 7371100 5966200 6973300 2 2 2 2 2 2 2 2 2 2 2 8249000 13305000 135010 12079000 9218300 9040300 8936300 11940000 12942000 10694000 12264000 7681300 12410000 773270 12364000 8836700 9462200 9203200 11956000 12967000 10495000 11852000 4 4 3 4 4 4 4 4 4 4 4 1514100000 768650000 745420000 7435 309 6929 39863;39864;39865;39866;39867;39868;39869 47894;47895;47896;47897;47898;47899;47900;47901 47901 8 GSIYLAGQNIQDVSLESLRR Unmodified 2218.1706 0.17059416 304 O75027;O75027-3;O75027-2 ABCB7 ATP-binding cassette sub-family B member 7, mitochondrial yes no 0 0 0 1 By MS/MS 8 0 2 2 64.203 64.373 3 1.3566E-07 19932 20211116_3436_TMUAki_TMT10x_P_F8 95.666 67.086 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7436 304 6930 39870;39871 47902;47903 47902 2 GSLAAVAHAQSLVEAQPNVDKLVEDHLAVQSLIR Unmodified 3577.9216 0.92164369 1491 Q02218;Q02218-2;Q02218-3 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 0 0 0 1 By MS/MS By matching 8 0 2 1 1 75.812 75.766 5 6.3494E-07 24652 20211116_3436_TMUAki_TMT10x_P_F8 77.493 69.926 2567600 3888100 107090 3201600 2467500 4767400 3364300 3257900 3179200 3612000 3204500 2391500 3625500 311270 3338000 2395000 4726200 3360000 3399200 3243300 3513100 3090400 1 1 1 1 1 1 1 1 1 1 1 2567600 3888100 107090 3201600 2467500 4767400 3364300 3257900 3179200 3612000 3204500 2391500 3625500 311270 3338000 2395000 4726200 3360000 3399200 3243300 3513100 3090400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1413900000 976810000 437060000 7437 1491 6931 39872;39873 47904 47904 1 GSLDYRPLTTADPIDEHR Unmodified 2055.0021 0.0021318501 62 O00139;O00139-2;O00139-1;O00139-5;O00139-4 KIF2A Kinesin-like protein KIF2A yes no 0 0 0 1 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 44.605 44.653 4 3.8289E-12 12250 20211116_3431_TMUAki_TMT10x_P_F4 133.93 115.57 10177000 17573000 62983 20294000 13993000 15571000 10515000 14996000 11944000 12359000 14806000 9475500 16408000 654470 20440000 13331000 16142000 10892000 15197000 12190000 12179000 14194000 6 6 3 6 6 6 6 6 6 6 6 4561100 7729700 39029 9133700 9475500 11224000 6507000 6281900 5601300 5503100 6742200 4246900 7217900 456840 9249900 9011600 11195000 6727500 6613100 5778500 5406700 6468700 3 3 2 3 3 3 3 3 3 3 3 5615400 9843800 23953 11160000 4518000 4347100 4007500 8714100 6342700 6855400 8063300 5228600 9190200 197630 11191000 4319500 4947000 4164000 8583900 6411500 6771900 7725100 3 3 1 3 3 3 3 3 3 3 3 1962300000 1151100000 811240000 7438 62 6932 39874;39875;39876;39877;39878;39879 47905;47906;47907;47908;47909;47910 47906 6 GSLESPATDVFGSTEEGEKR Unmodified 2094.9706 0.97055695 74 O00232;O00232-2 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes no 0 0 0 1 By MS/MS By MS/MS 2.86 0.833 3 2 2 3 4 50.181 50.093 3 2.8278E-71 16072 20211116_3430_TMUAki_TMT10x_P_F3 280.26 244.26 28522000 52061000 259720 53666000 45590000 55046000 32642000 51163000 55362000 44864000 46102000 26556000 48584000 2595900 54655000 43388000 55905000 34491000 52026000 54998000 44076000 44759000 13 13 6 13 13 13 13 13 13 13 13 14133000 25441000 251500 26762000 33647000 43438000 24818000 25054000 26534000 22081000 22768000 13161000 23744000 1642600 27458000 32053000 42810000 25689000 26312000 26785000 21688000 22080000 7 7 4 7 7 7 7 7 7 7 7 14389000 26620000 8213.5 26904000 11944000 11608000 7823800 26109000 28828000 22783000 23334000 13396000 24840000 953320 27197000 11335000 13095000 8801700 25714000 28214000 22388000 22679000 6 6 2 6 6 6 6 6 6 6 6 2451200000 1522100000 929110000 7439 74 6933 39880;39881;39882;39883;39884;39885;39886 47911;47912;47913;47914;47915;47916;47917;47918;47919;47920;47921;47922;47923;47924 47914 14 GSLEVLNLKDVEEGDEKFE Unmodified 2149.0427 0.042659261 3267 Q9Y3A5 SBDS Ribosome maturation protein SBDS yes yes 0 0 0 2 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 71.74 71.607 3 1.8097E-23 23140 20211116_3440_TMUAki_TMT10x_S_F2 167.22 155.45 6578100 11502000 0 9672800 9742700 7887700 8246600 7671800 7947300 8561000 9424100 6124300 10725000 517350 9970300 9299500 8140700 8433900 7837700 8150500 8324500 9045400 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6578100 11502000 0 9672800 9742700 7887700 8246600 7671800 7947300 8561000 9424100 6124300 10725000 517350 9970300 9299500 8140700 8433900 7837700 8150500 8324500 9045400 2 2 0 2 2 2 2 2 2 2 2 1302000000 0 1302000000 7440 3267 6934 39887;39888;39889;39890 47925;47926;47927;47928 47927 4 GSLGQGTAPVLPGK Unmodified 1280.7089 0.70885036 1632 Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;Q13428-6;Q13428-7;Q13428-5 TCOF1 Treacle protein yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 49.137 49.134 3 7.7588E-05 13259 20211116_3447_TMUAki_TMT10x_S_F8 91.441 68.065 6631600 10520000 219750 12179000 11058000 8560600 9442300 5595400 5346400 5244400 9304900 6176300 9822700 816600 12253000 10576000 8877600 9535400 5828100 5758700 5136400 8853500 2 2 2 2 2 2 2 2 2 2 2 4409100 6981100 141610 8126900 8897800 6959300 7250900 3401700 3225900 3223500 6194500 4106400 6518400 560380 8192400 8498800 7081700 7316400 3632800 3563200 3155600 5883700 1 1 1 1 1 1 1 1 1 1 1 2222500 3539200 78139 4051900 2160400 1601300 2191300 2193600 2120500 2020900 3110400 2070000 3304300 256220 4060800 2077000 1795800 2219000 2195300 2195500 1980800 2969800 1 1 1 1 1 1 1 1 1 1 1 317370000 208320000 109050000 7441 1632 6935 39891;39892 47929;47930 47930 2 GSLLFTAGPLEEER Unmodified 1517.7726 0.77257283 1195 P53004 BLVRA Biliverdin reductase A yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.632 1 3 1 2 3 67.003 66.663 2;3 2.8201E-31 23952 20211116_3441_TMUAki_TMT10x_S_F3 218.62 135.62 7825500 12886000 48002 11707000 7930800 11389000 8682500 8889900 8759800 9048100 10113000 7286100 12019000 621050 12021000 7621500 11565000 8770100 9169500 8956300 8830300 9714100 4 4 2 4 4 4 4 4 4 4 4 3440100 5350200 25852 4836400 3329100 6577500 3912200 3747700 3907200 3842000 4093500 3203100 4990400 286210 4996200 3206900 6529700 3937700 3956000 3981700 3748400 3943100 2 2 1 2 2 2 2 2 2 2 2 4385400 7535500 22151 6870200 4601800 4811000 4770300 5142300 4852600 5206100 6019900 4083000 7028900 334840 7024900 4414600 5035600 4832400 5213500 4974500 5081900 5771100 2 2 1 2 2 2 2 2 2 2 2 1557500000 641310000 916220000 7442 1195 6936 39893;39894;39895;39896;39897 47931;47932;47933;47934 47933 4 GSLLFTAGPLEEERFGFPAFSGISR Unmodified 2684.3599 0.3598515 1195 P53004 BLVRA Biliverdin reductase A yes yes 0 0 0 1 By matching By MS/MS 2 0 2 1 1 79.151 79.124 3 1.4097E-17 26183 20211116_3440_TMUAki_TMT10x_S_F2 138.62 97.42 1611800 2406100 0 2384400 2039000 1859400 1984900 1675700 1779600 1602200 2121800 1500600 2245100 124610 2426200 1952700 1922500 2009800 1710800 1831600 1567800 2036300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1611800 2406100 0 2384400 2039000 1859400 1984900 1675700 1779600 1602200 2121800 1500600 2245100 124610 2426200 1952700 1922500 2009800 1710800 1831600 1567800 2036300 1 1 0 1 1 1 1 1 1 1 1 2092000000 1332500000 759500000 7443 1195 6937 39898;39899 47935 47935 1 GSLPANVPTPR Unmodified 1107.6037 0.60365701 907 P33240;P33240-2 CSTF2 Cleavage stimulation factor subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 37.894 38.334 2 5.6656E-07 9388 20211116_3436_TMUAki_TMT10x_P_F8 106.62 68.38 331570 574530 352.05 712900 766270 599770 397860 476960 577300 389680 537120 308710 536610 32381 715810 725400 615230 428390 488520 578030 384180 519390 2 2 1 2 2 2 2 2 2 2 2 192550 307040 0 370100 625070 473890 260700 252920 305550 211190 295580 179270 286740 20497 374660 590090 471400 284880 267050 308530 207980 285440 1 1 0 1 1 1 1 1 1 1 1 139020 267490 352.05 342810 141200 125880 137160 224040 271750 178490 241540 129440 249880 11884 341150 135310 143830 143500 221470 269500 176200 233940 1 1 1 1 1 1 1 1 1 1 1 37693000 26411000 11283000 7444 907 6938 39900;39901;39902 47936;47937;47938 47937 3 GSLQILDQLLLPK Unmodified 1436.8603 0.86026563 2681 Q9BV20;Q9BV20-2 MRI1 Methylthioribose-1-phosphate isomerase yes no 0 0 0 0 By MS/MS 2 0 1 1 80.395 80.376 3 1.1679E-05 26622 20211116_3440_TMUAki_TMT10x_S_F2 87.18 63.329 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7445 2681 6939 39903 47939 47939 1 GSLQPAPAQPPGDPAAQASVSNGEDAGGGAGR Unmodified 2886.3492 0.34923982 116 O14562 UBFD1 Ubiquitin domain-containing protein UBFD1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 42.874 42.921 3 1.119E-50 13091 20211116_3430_TMUAki_TMT10x_P_F3 195.23 183.92 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7446 116 6940 39904 47940 47940 1 GSLRPNGIIVIK Unmodified 1265.782 0.78195573 2687 Q9BV86 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 48.694 48.845 3 2.6525E-05 14352 20211116_3442_TMUAki_TMT10x_S_F4 93.766 26.653 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7447 2687 6941 39905;39906 47941;47942 47942 2 GSLTFEPLTLVPIQTK Unmodified 1742.9818 0.98183733 2912 Q9NQW7;Q9NQW7-3;Q9NQW7-2;Q9NQW7-4 XPNPEP1 Xaa-Pro aminopeptidase 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.8 3.43 3 2 3 2 79.026 79.003 3 1.9242E-15 25898 20211116_3428_TMUAki_TMT10x_P_F1 139.58 123.64 6439300 11240000 23036 10583000 7615900 9245600 8402700 6435800 5712300 6558400 8081100 5995500 10486000 544310 10822000 7321800 9438100 8398800 6689000 6013000 6400200 7722200 3 3 1 3 3 3 3 3 3 3 3 2441200 4269400 0 3829800 2269200 4403200 2940900 2576300 2035000 2718500 3000600 2272800 3982200 178650 3946600 2191400 4409300 2920000 2715900 2144200 2649200 2864700 1 1 0 1 1 1 1 1 1 1 1 3998000 6971000 23036 6752800 5346600 4842300 5461800 3859500 3677200 3839900 5080500 3722700 6503800 365650 6875800 5130500 5028800 5478800 3973100 3868800 3751100 4857600 2 2 1 2 2 2 2 2 2 2 2 1639900000 650830000 989060000 7448 2912 6942 39907;39908;39909;39910;39911 47943;47944;47945;47946;47947 47943 5 GSMVGPFQEAAFALPVSGMDKPVFTDPPVK Oxidation (M) 3134.5457 0.54567971 3222 Q9Y237;Q9Y237-2 PIN4 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 yes no 0 0 1 1 By MS/MS By MS/MS 4.5 3.5 1 1 1 1 78.317 78.292 4 0.0034222 25621 20211116_3428_TMUAki_TMT10x_P_F1 44.555 37.906 5917500 9410100 18170 8968400 7121900 8309000 7094000 5541800 5138900 6112900 7299200 5509800 8779000 513640 9170500 6828500 8443200 7136700 5791200 5390200 5946700 6974400 2 2 1 2 2 2 2 2 2 2 2 3963100 6190000 18170 6400900 3572400 5965500 4423100 3297400 3226700 3780500 4927700 3690200 5776800 340030 6508500 3447900 6044100 4405000 3501700 3395300 3672300 4700900 1 1 1 1 1 1 1 1 1 1 1 1954300 3220100 0 2567500 3549500 2343600 2670900 2244300 1912300 2332400 2371400 1819600 3002200 173610 2662000 3380600 2399000 2731700 2289500 1994900 2274400 2273400 1 1 0 1 1 1 1 1 1 1 1 2186800000 843550000 1343300000 7449 3222 6943 39912;39913 47948;47949 47948 3213;3214 2 GSMVGPFQEAAFALPVSGMDKPVFTDPPVK 2 Oxidation (M) 3150.5406 0.54059433 3222 Q9Y237;Q9Y237-2 PIN4 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 yes no 0 0 2 1 By matching By MS/MS 7.5 0.5 1 1 1 1 77.432 77.443 4 2.694E-06 24783 20211116_3447_TMUAki_TMT10x_S_F8 64.733 54.026 4954000 7817300 9744.4 7590500 6682300 7464400 6593600 7324900 7539200 6706500 7110100 4612300 7293500 395250 7757700 6402500 7608900 6722100 7436000 7613200 6575400 6872100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4954000 7817300 9744.4 7590500 6682300 7464400 6593600 7324900 7539200 6706500 7110100 4612300 7293500 395250 7757700 6402500 7608900 6722100 7436000 7613200 6575400 6872100 2 2 1 2 2 2 2 2 2 2 2 3575500000 1339000000 2236500000 7450 3222 6943 39914;39915 47950;47951 47950 3213;3214 2 GSNKLVIEEAER Unmodified 1343.7045 0.70449327 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 1 By MS/MS By MS/MS 3.57 1.18 2 1 2 2 3 4 36.402 36.412 3 6.9607E-06 11765 20211116_3441_TMUAki_TMT10x_S_F3 106.52 79.426 10333000 17249000 9082.3 13330000 23578000 23720000 14240000 19172000 18250000 15819000 17257000 9621300 16081000 1030600 14031000 22372000 23421000 15057000 19622000 18355000 15588000 16678000 5 5 3 5 5 5 5 5 5 5 5 7389800 12115000 5124.7 9011200 19132000 20242000 10912000 13588000 13137000 11342000 12253000 6880500 11293000 765420 9580100 18137000 19779000 11567000 14084000 13236000 11170000 11847000 2 2 1 2 2 2 2 2 2 2 2 2943600 5134300 3957.6 4318400 4446100 3477700 3328600 5583800 5112100 4476400 5003700 2740800 4787800 265160 4450500 4235000 3642100 3490000 5537800 5118800 4417500 4830300 3 3 2 3 3 3 3 3 3 3 3 1199600000 899420000 300180000 7451 1147 6944 39916;39917;39918;39919;39920;39921;39922 47952;47953;47954;47955;47956;47957;47958;47959 47957 8 GSNLDAPEPYR Unmodified 1217.5677 0.56766543 811 P26358;P26358-2;P26358-3 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 35.46 35.22 2 3.2925E-06 11123 20211116_3441_TMUAki_TMT10x_S_F3 122.51 103.41 219260 362900 5997.6 447370 214050 171550 217420 246420 318320 193110 341130 204200 338940 23695 446300 205690 193460 223490 245170 320230 190800 328370 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 219260 362900 5997.6 447370 214050 171550 217420 246420 318320 193110 341130 204200 338940 23695 446300 205690 193460 223490 245170 320230 190800 328370 1 1 1 1 1 1 1 1 1 1 1 19618000 0 19618000 7452 811 6945 39923 47960 47960 1 GSNMDFREPTEEER Oxidation (M) 1711.7108 0.71077721 1765 Q15056-2;Q15056 EIF4H Eukaryotic translation initiation factor 4H yes no 0 0 1 1 By MS/MS By MS/MS 2.67 1.49 2 1 1 1 1 4 2 29.689 29.615 3 2.953E-09 7351 20211116_3429_TMUAki_TMT10x_P_F2 130.12 109.89 558230 757380 3145.2 1457600 3017900 1205200 825090 655170 1065400 428770 1113400 519740 709330 76671 1433800 2838300 1231000 959020 687110 1075000 428090 1072600 4 4 1 4 4 4 4 4 4 4 4 351850 444380 0 922350 2835600 1061800 629970 410460 676650 259290 733450 327590 416440 62037 909280 2663300 1058400 755780 445670 688350 259460 705780 2 2 0 2 2 2 2 2 2 2 2 206390 313000 3145.2 535250 182330 143440 195120 244710 388710 169480 379990 192150 292890 14634 524480 175010 172570 203240 241440 386670 168630 366840 2 2 1 2 2 2 2 2 2 2 2 388000000 323820000 64182000 7453 1765 6946 39924;39925;39926;39927;39928;39929 47961;47962;47963;47964 47962 2376 4 GSNMDFREPTEEER Unmodified 1695.7159 0.71586259 1765 Q15056-2;Q15056 EIF4H Eukaryotic translation initiation factor 4H yes no 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 33.554 33.442 3 2.977E-37 7370 20211116_3428_TMUAki_TMT10x_P_F1 240.5 198.86 1283400 1722700 19380 3906600 6581700 2498400 1964100 1054100 1104000 790740 2312400 1195100 1615700 197060 3810100 6195900 2599600 2207100 1136700 1203700 783120 2193300 4 4 1 4 4 4 4 4 4 4 4 878380 1148200 19380 2749300 6286200 2303800 1673500 698900 709850 492190 1595600 818000 1077400 166270 2685000 5912700 2338300 1908800 785390 795750 489210 1511800 2 2 1 2 2 2 2 2 2 2 2 405020 574520 0 1157300 295550 194610 290640 355190 394190 298550 716810 377110 538270 30791 1125100 283190 261250 298270 351330 407940 293910 681490 2 2 0 2 2 2 2 2 2 2 2 274510000 236420000 38090000 7454 1765 6946 39930;39931;39932;39933 47965;47966;47967;47968 47965 4 GSNNVALGYDEGSIIVK Unmodified 1734.8788 0.87882882 936 P35606;P35606-2 COPB2 Coatomer subunit beta' yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 60.352 60.347 3 0.097604 17751 20211116_3444_TMUAki_TMT10x_S_F5 30.062 9.5997 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7455 936 6947 39934;39935 47969;47970 47970 2 GSNPHLQTFTFTR Unmodified 1504.7423 0.74227576 2652 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 2.5 3 2 1 3 3 41.044 40.923 3 2.2893E-18 10333 20211116_3428_TMUAki_TMT10x_P_F1 146.77 130.52 3201800 5389800 10668 5868200 4788200 3775500 3061600 3072200 3401900 2691900 4242200 2981200 5031100 291750 5921500 4548000 3959500 3206300 3147700 3475800 2644700 4066300 4 4 2 4 4 4 4 4 4 4 4 1123900 1889100 0 1916400 2905000 2237800 1362700 1078300 1372000 937940 1522700 1046500 1762900 117730 1958000 2746600 2233900 1463200 1150700 1400700 921820 1464200 1 1 0 1 1 1 1 1 1 1 1 2077800 3500700 10668 3951800 1883200 1537600 1698800 1993900 2029900 1754000 2719500 1934700 3268200 174020 3963500 1801300 1725600 1743100 1997000 2075000 1722900 2602100 3 3 2 3 3 3 3 3 3 3 3 332680000 87302000 245380000 7456 2652 6948 39936;39937;39938;39939;39940;39941 47971;47972;47973;47974;47975;47976;47977 47971 7 GSNSLPLLR Unmodified 955.54508 0.5450795 1263 P57088 TMEM33 Transmembrane protein 33 yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 45.508 45.45 2 0.00013203 12274 20211116_3436_TMUAki_TMT10x_P_F8 101.9 82.119 1854500 3102900 7952.3 3617300 1592000 1568100 1554400 2750400 2825700 2473500 2876200 1726800 2897200 157490 3623300 1526100 1750500 1618100 2728400 2820800 2427100 2773000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1854500 3102900 7952.3 3617300 1592000 1568100 1554400 2750400 2825700 2473500 2876200 1726800 2897200 157490 3623300 1526100 1750500 1618100 2728400 2820800 2427100 2773000 1 1 1 1 1 1 1 1 1 1 1 96980000 0 96980000 7457 1263 6949 39942;39943;39944 47978;47979;47980 47978 3 GSNTIASAAADKIPGLLGVFQK Unmodified 2157.1794 0.17936793 1234 P55060;P55060-3;P55060-4 CSE1L Exportin-2 yes no 0 0 0 1 By MS/MS By MS/MS 4.25 0.433 3 1 1 3 78.302 78.29 3;4 6.9114E-27 26014 20211116_3431_TMUAki_TMT10x_P_F4 174.7 160.23 21053000 35473000 173020 36922000 20046000 24571000 25383000 16194000 16419000 19103000 23385000 19604000 33105000 1827000 37380000 19361000 25605000 25191000 16974000 17343000 18537000 22343000 5 5 3 5 5 5 5 5 5 5 5 4942100 7473900 139530 8410700 4564400 7852300 4929800 3160200 3105000 4148900 4671400 4602700 6977500 534480 8505800 4394200 7928500 4924900 3479500 3294200 4011300 4457900 1 1 1 1 1 1 1 1 1 1 1 16111000 27999000 33494 28511000 15481000 16719000 20454000 13033000 13314000 14954000 18714000 15001000 26128000 1292500 28874000 14967000 17677000 20266000 13495000 14048000 14526000 17885000 4 4 2 4 4 4 4 4 4 4 4 3766400000 1119100000 2647200000 7458 1234 6950 39945;39946;39947;39948 47981;47982;47983;47984;47985 47981 5 GSPAPAVLAEEAR Unmodified 1266.6568 0.65681479 1252 P56181-2 yes yes 0 0 0 0 By MS/MS 3 0 1 1 40.091 40.144 2 0.00015181 11988 20211116_3430_TMUAki_TMT10x_P_F3 96.067 72.695 162270 257970 1502.1 319460 350580 341610 176840 136440 161800 138810 196220 151100 240940 17491 321890 331880 342030 187990 149150 166480 135470 188220 1 1 1 1 1 1 1 1 1 1 1 162270 257970 1502.1 319460 350580 341610 176840 136440 161800 138810 196220 151100 240940 17491 321890 331880 342030 187990 149150 166480 135470 188220 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9876100 9876100 0 7459 1252 6951 39949 47986 47986 1 GSPCSEEAGTLRR Unmodified 1418.6572 0.6572255 2972 Q9NVI1;Q9NVI1-2;Q9NVI1-1;Q9NVI1-4 FANCI Fanconi anemia group I protein yes no 0 0 0 1 By MS/MS 3 0 1 1 27.574 27.291 3 0.00096283 8032 20211116_3441_TMUAki_TMT10x_S_F3 77.912 62.372 28849 58147 3183.7 54266 39157 37180 34605 23821 30008 32525 63626 26885 54243 5503.2 55379 37624 38630 35197 25155 31922 31407 60337 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28849 58147 3183.7 54266 39157 37180 34605 23821 30008 32525 63626 26885 54243 5503.2 55379 37624 38630 35197 25155 31922 31407 60337 1 1 1 1 1 1 1 1 1 1 1 3468400 0 3468400 7460 2972 6952 39950 47987 47987 1 GSPFQVTR Unmodified 890.46102 0.46101552 3013 Q9NY33;Q9NY33-4 DPP3 Dipeptidyl peptidase 3 yes no 0 0 0 0 By MS/MS By MS/MS 7 0.816 1 1 1 2 1 34.621 34.947 2 0.032213 7370 20211116_3447_TMUAki_TMT10x_S_F8 62.582 34.159 475840 790860 10460 847220 971530 781910 593470 506580 589280 495810 638920 443100 738170 52976 859350 922470 794400 621620 528630 601430 484680 614800 3 3 2 3 3 3 3 3 3 3 3 337590 552440 4888.7 589440 843110 668120 448850 370270 429880 356520 446020 314340 515620 36459 599890 798590 669090 475310 391090 438730 348760 429760 2 2 1 2 2 2 2 2 2 2 2 138240 238420 5571.6 257780 128420 113790 144620 136310 159400 139290 192890 128760 222540 16516 259460 123880 125310 146310 137540 162700 135920 185040 1 1 1 1 1 1 1 1 1 1 1 30089000 17725000 12364000 7461 3013 6953 39951;39952;39953 47988 47988 1 GSPGVVHLVAFHPDPTR Unmodified 1784.9322 0.93220179 1563 Q12788 TBL3 Transducin beta-like protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 42.915 43.018 4 0.0004138 10810 20211116_3447_TMUAki_TMT10x_S_F8 68.41 52.871 1433000 2077700 13596 2279900 1933500 1716000 1511400 1805300 1770100 1514700 2002100 1334300 1939400 122600 2303100 1843100 1784900 1563200 1822300 1797700 1491300 1924200 2 2 1 2 2 2 2 2 2 2 2 668710 911540 0 945170 1225500 1160100 802660 695000 759120 670310 826880 622510 850690 47349 965060 1163400 1158100 834940 729360 776590 655670 795560 1 1 0 1 1 1 1 1 1 1 1 764340 1166100 13596 1334700 707960 555890 708740 1110300 1011000 844370 1175200 711770 1088800 75250 1338100 679670 626800 728220 1093000 1021100 835610 1128600 1 1 1 1 1 1 1 1 1 1 1 191430000 105430000 85996000 7462 1563 6954 39954;39955 47989;47990 47990 2 GSPLGEVVEQGITR Unmodified 1440.7573 0.75725712 1152 P51398;P51398-2;P51398-3 DAP3 28S ribosomal protein S29, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 3.4 0.49 3 2 3 2 55.909 55.877 2;3 1.0814E-13 17226 20211116_3442_TMUAki_TMT10x_S_F4 135.26 102.63 4413200 6668500 0 8216900 9517500 9885000 5828300 4545900 5607700 4459800 5759000 4109000 6228200 417220 8298200 9031800 9847300 6098000 4888800 5719900 4359200 5550800 1 1 0 1 1 1 1 1 1 1 1 4413200 6668500 0 8216900 9517500 9885000 5828300 4545900 5607700 4459800 5759000 4109000 6228200 417220 8298200 9031800 9847300 6098000 4888800 5719900 4359200 5550800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 558080000 558080000 0 7463 1152 6955 39956;39957;39958;39959;39960 47991;47992;47993;47994 47994 4 GSPLNAAPYGIESMSQDTEVR Oxidation (M) 2237.027 0.027025972 713 P18031 PTPN1 Tyrosine-protein phosphatase non-receptor type 1 yes yes 0 0 1 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 51.989 51.927 3 5.0885E-14 16809 20211116_3430_TMUAki_TMT10x_P_F3 129.27 104.98 4355200 7121000 26432 7966700 6333900 8670100 5094000 8148400 7646800 6539000 6638600 4055100 6647800 384340 8078200 6041700 8777400 5310900 8262900 7631900 6452600 6435200 5 5 3 5 5 5 5 5 5 5 5 2641600 3958300 18203 4688700 4686400 7013700 3861900 4663700 4220800 3804400 3800400 2459700 3696300 264600 4766400 4473900 6948900 3971500 4834600 4263300 3751000 3679100 3 3 2 3 3 3 3 3 3 3 3 1713600 3162700 8228.5 3278000 1647500 1656400 1232000 3484800 3426100 2734600 2838200 1595400 2951600 119740 3311700 1567800 1828500 1339300 3428300 3368600 2701700 2756100 2 2 1 2 2 2 2 2 2 2 2 2256700000 1468000000 788690000 7464 713 6956 39961;39962;39963;39964 47995;47996;47997;47998;47999 47996 816 5 GSPLVVISQGK Unmodified 1083.6288 0.62880913 1852 Q16555;Q16555-2 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 4 4 4 4 53.462 53.395 2;3 2.655E-16 14964 20211116_3447_TMUAki_TMT10x_S_F8 215.06 192.57 37202000 57076000 36462 66019000 60914000 56622000 38397000 48790000 48677000 43124000 51601000 34636000 53292000 3021700 66578000 57815000 58086000 40443000 49832000 49175000 42350000 49688000 9 9 2 9 9 9 9 9 9 9 9 19013000 28289000 0 32643000 43310000 40640000 22027000 23585000 24279000 21915000 26366000 17700000 26413000 1633700 33113000 40975000 40525000 23525000 24791000 24675000 21472000 25370000 4 4 0 4 4 4 4 4 4 4 4 18189000 28788000 36462 33376000 17603000 15982000 16370000 25204000 24399000 21209000 25235000 16935000 26879000 1387900 33465000 16841000 17561000 16918000 25041000 24500000 20878000 24318000 5 5 2 5 5 5 5 5 5 5 5 4593400000 2413900000 2179500000 7465 1852 6957 39965;39966;39967;39968;39969;39970;39971;39972 48000;48001;48002;48003;48004;48005;48006;48007;48008 48007 9 GSPMEISLPIALSK Oxidation (M) 1457.78 0.7799664 589 P09960;P09960-2;P09960-4;P09960-3 LTA4H Leukotriene A-4 hydrolase yes no 0 0 1 0 By MS/MS By MS/MS 7 0 4 1 3 68.224 68.713 3 7.0029E-05 23525 20211116_3446_TMUAki_TMT10x_S_F7 83.729 67.838 5542100 8380000 114710 8765200 6329900 10243000 6358300 5709600 5368200 6007500 6808900 5161100 7820900 577420 8936800 6077000 10242000 6417300 6042800 5555700 5855000 6523700 1 1 1 1 1 1 1 1 1 1 1 5542100 8380000 114710 8765200 6329900 10243000 6358300 5709600 5368200 6007500 6808900 5161100 7820900 577420 8936800 6077000 10242000 6417300 6042800 5555700 5855000 6523700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 779050000 779050000 0 7466 589 6958 39973;39974;39975;39976 48009;48010;48011;48012 48010 567 4 GSPQQIDHAK Unmodified 1079.536 0.53597137 2380 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 28.021 27.904 3 3.0429E-05 5414 20211116_3431_TMUAki_TMT10x_P_F4 126.66 97.915 231640 345820 4183.4 326770 238860 268350 214680 149570 168370 141560 221190 215710 322620 23204 333830 228680 274310 217590 157820 175190 138590 211740 2 2 2 2 2 2 2 2 2 2 2 147280 229180 3865.4 200630 159950 208180 137250 107260 114300 95296 137850 137160 213750 15990 206800 153030 209340 139700 113790 118120 93564 132250 1 1 1 1 1 1 1 1 1 1 1 84360 116640 317.99 126140 78907 60177 77428 42302 54068 46268 83338 78550 108870 7214 127020 75642 64971 77892 44031 57066 45024 79487 1 1 1 1 1 1 1 1 1 1 1 11221000 7766600 3454200 7467 2380 6959 39977;39978 48013;48014 48013 2 GSPTGGAQLLK Unmodified 1027.5662 0.56620887 1724 Q14684;Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 0 0 By MS/MS 7 0 1 1 40.013 40.645 2 3.7175E-12 12004 20211116_3446_TMUAki_TMT10x_S_F7 143.89 85.25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7468 1724 6960 39979 48015 48015 1 GSPVVTHDLLR Unmodified 1192.6564 0.65642086 3172 Q9ULT8 HECTD1 E3 ubiquitin-protein ligase HECTD1 yes yes 0 0 0 0 By MS/MS 5 0 1 1 36.403 36.565 3 0.048972 8144 20211116_3444_TMUAki_TMT10x_S_F5 47.712 30.501 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7469 3172 6961 39980 48016 48016 1 GSQAQPDSPSAQLALIAASQSFLQPGGK Unmodified 2753.3984 0.39842185 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS 1.33 0.471 2 1 3 79.182 79.172 3;4 0.0022684 25949 20211116_3428_TMUAki_TMT10x_P_F1 53.197 30.762 15230000 21972000 297870 19728000 12060000 19995000 16172000 9004800 8079500 10108000 14815000 14183000 20494000 1495900 20288000 11685000 20106000 15938000 9743200 8812600 9826900 14083000 3 3 3 3 3 3 3 3 3 3 3 15230000 21972000 297870 19728000 12060000 19995000 16172000 9004800 8079500 10108000 14815000 14183000 20494000 1495900 20288000 11685000 20106000 15938000 9743200 8812600 9826900 14083000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2041800000 2041800000 0 7470 3293 6962 39981;39982;39983 48017;48018;48019 48017 3 GSQPPPAAESQSSLRR Unmodified 1666.8387 0.83869534 220 O43491;O43491-4;O43491-2;O43491-3 EPB41L2 Band 4.1-like protein 2 yes no 0 0 0 1 By MS/MS 5 0 1 1 27.121 27.047 3 3.2327E-07 5577 20211116_3433_TMUAki_TMT10x_P_F5 105.53 42.436 70879 118360 557.19 110180 116450 129290 84957 59536 77130 58074 88699 65999 110410 4093.6 113270 110900 128970 87580 64009 79219 56779 85206 2 2 1 2 2 2 2 2 2 2 2 70879 118360 557.19 110180 116450 129290 84957 59536 77130 58074 88699 65999 110410 4093.6 113270 110900 128970 87580 64009 79219 56779 85206 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5780000 5780000 0 7471 220 6963 39984 48020;48021 48021 2 GSRVDIETPNLEGTLTGPR Unmodified 2011.0334 0.033431978 1555 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 1 By MS/MS 4 0 1 1 51.005 51.168 3 1.0014E-17 14867 20211116_3431_TMUAki_TMT10x_P_F4 152 132.42 1615500 2891000 18918 3175400 2950900 3916900 2249600 2501400 2386100 2145400 2428100 1504300 2698600 170270 3230400 2813000 3912700 2322700 2604100 2423000 2110000 2341000 1 1 1 1 1 1 1 1 1 1 1 1615500 2891000 18918 3175400 2950900 3916900 2249600 2501400 2386100 2145400 2428100 1504300 2698600 170270 3230400 2813000 3912700 2322700 2604100 2423000 2110000 2341000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 457280000 457280000 0 7472 1555 6964 39985 48022 48022 1 GSSAAGLTASVMR Oxidation (M) 1222.5976 0.59758535 912 P33992 MCM5 DNA replication licensing factor MCM5 yes yes 0 0 1 0 By MS/MS 8 0 1 1 33.54 33.824 2 0.031584 7595 20211116_3436_TMUAki_TMT10x_P_F8 63.216 45.83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7473 912 6965 39986 48023 48023 1131 1 GSSAAGLTASVMRDPSSR Oxidation (M) 1764.8425 0.84246009 912 P33992 MCM5 DNA replication licensing factor MCM5 yes yes 0 0 1 1 By MS/MS By MS/MS 5.33 2.49 2 1 3 1 2 5 4 31.911 32.055 3 2.4971E-06 7544 20211116_3433_TMUAki_TMT10x_P_F5 98.552 86.169 1073200 1675600 22829 1839500 1550600 1811800 1377300 1094200 1037400 1397600 1349000 999380 1564100 109410 1864600 1483600 1831400 1395600 1157800 1081300 1352500 1291700 9 9 4 9 9 9 9 9 9 9 9 868690 1365200 19936 1451900 1347800 1655000 1178800 898160 866690 1148700 1090600 808950 1274200 93937 1478100 1289100 1656500 1194900 958880 903310 1111600 1045100 5 5 3 5 5 5 5 5 5 5 5 204500 310410 2893.3 387680 202810 156840 198430 196050 170730 248860 258470 190430 289930 15472 386590 194530 174900 200650 198930 178010 240870 246620 4 4 1 4 4 4 4 4 4 4 4 108260000 83705000 24559000 7474 912 6966 39987;39988;39989;39990;39991;39992;39993;39994;39995 48024;48025;48026;48027;48028;48029 48025 1131 6 GSSAAGLTASVMRDPSSR Unmodified 1748.8475 0.84754546 912 P33992 MCM5 DNA replication licensing factor MCM5 yes yes 0 0 0 1 By MS/MS By MS/MS 5.57 2.92 2 3 2 5 2 37.627 37.852 3 3.2226E-50 9126 20211116_3436_TMUAki_TMT10x_P_F8 222.96 193.63 2647000 4145400 27196 5645000 4985000 3864500 3110300 2306000 2145300 2057500 3472000 2464700 3873700 263080 5626300 4733400 4011700 3223000 2415800 2271800 2019700 3308200 10 10 6 10 10 10 10 10 10 10 10 1456400 2210800 18783 3035600 3984300 3152300 2245100 1329800 1225200 1186800 1908200 1356100 2066000 168300 3040300 3777400 3163200 2336600 1439700 1315300 1165000 1819700 6 6 4 6 6 6 6 6 6 6 6 1190700 1934600 8413.8 2609400 1000700 712110 865210 976250 920050 870680 1563700 1108600 1807700 94782 2585900 956070 848420 886400 976090 956430 854700 1488600 4 4 2 4 4 4 4 4 4 4 4 269430000 171630000 97794000 7475 912 6966 39996;39997;39998;39999;40000;40001;40002 48030;48031;48032;48033;48034;48035;48036;48037;48038;48039;48040;48041 48037 12 GSSAGGGGSGAAAATAATAGGQHR Unmodified 1926.8892 0.88922736 90 O00458 IFRD1 Interferon-related developmental regulator 1 yes yes 0 0 0 0 By MS/MS 5 0 1 1 26.329 26.255 3 5.7203E-38 5197 20211116_3433_TMUAki_TMT10x_P_F5 188.43 167.18 8782.6 16611 0 13478 17471 31622 11464 14538 13280 10053 19911 8177.5 15488 0 14243 16601 30711 11999 15509 13666 10003 19002 2 2 0 2 2 2 2 2 2 2 2 8782.6 16611 0 13478 17471 31622 11464 14538 13280 10053 19911 8177.5 15488 0 14243 16601 30711 11999 15509 13666 10003 19002 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4550900 4550900 0 7476 90 6967 40003 48042;48043 48043 2 GSSASLVLK Unmodified 860.49673 0.49673232 1466 Q00325-2;Q00325 SLC25A3 Phosphate carrier protein, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 42.704 42.997 2 3.2569E-05 12643 20211116_3435_TMUAki_TMT10x_P_F7 128.38 51.009 7156200 11223000 6613 14444000 5322200 4898700 5828100 4707300 4645200 4560700 8106100 6662800 10484000 531370 14365000 5113500 5574900 5848600 4791300 4900300 4460200 7712500 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7156200 11223000 6613 14444000 5322200 4898700 5828100 4707300 4645200 4560700 8106100 6662800 10484000 531370 14365000 5113500 5574900 5848600 4791300 4900300 4460200 7712500 3 3 1 3 3 3 3 3 3 3 3 132300000 0 132300000 7477 1466 6968 40004;40005;40006 48044;48045;48046;48047 48044 4 GSSASLVLKR Unmodified 1016.5978 0.59784335 1466 Q00325-2;Q00325 SLC25A3 Phosphate carrier protein, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 2 0.756 2 3 2 3 4 33.168 33.044 2;3 3.6017E-09 7800 20211116_3428_TMUAki_TMT10x_P_F1 177.57 58.282 25972000 38855000 232880 39494000 23707000 26178000 23407000 15928000 16144000 14872000 25846000 24183000 36259000 2245300 40047000 22732000 27260000 23534000 16680000 17086000 14568000 24632000 7 7 3 7 7 7 7 7 7 7 7 14562000 20503000 65500 21017000 13097000 16529000 11459000 7657400 7716900 7074600 12999000 13558000 19133000 1155400 21338000 12515000 16916000 11593000 8215800 8201800 6933500 12377000 4 4 1 4 4 4 4 4 4 4 4 11410000 18353000 167380 18477000 10609000 9649100 11948000 8270200 8427000 7797300 12847000 10625000 17126000 1089900 18709000 10216000 10343000 11941000 8464000 8884000 7634700 12256000 3 3 2 3 3 3 3 3 3 3 3 2792500000 1174700000 1617800000 7478 1466 6969 40007;40008;40009;40010;40011;40012;40013 48048;48049;48050;48051;48052;48053;48054 48048 7 GSSAVGLTAYVMKDPETR Oxidation (M) 1896.9251 0.92512708 911 P33991 MCM4 DNA replication licensing factor MCM4 yes yes 0 0 1 1 By MS/MS By MS/MS 6 0.707 1 2 1 3 1 48.088 48.343 3 7.4906E-07 14677 20211116_3435_TMUAki_TMT10x_P_F7 101.15 86.535 10114000 17610000 46408 17006000 17876000 23165000 12390000 18764000 20388000 16418000 15725000 9417000 16430000 978350 17484000 17004000 23120000 13102000 19230000 20226000 16131000 15313000 5 5 4 5 5 5 5 5 5 5 5 6887900 11581000 35657 11490000 14624000 20032000 9717800 12209000 13150000 10851000 10189000 6413500 10806000 700540 11856000 13900000 19705000 10220000 12767000 13123000 10654000 9920900 4 4 3 4 4 4 4 4 4 4 4 3225600 6029000 10751 5516100 3251700 3132900 2672000 6555100 7238000 5567100 5535200 3003500 5623800 277810 5628000 3104000 3415500 2882000 6462500 7103200 5477900 5392400 1 1 1 1 1 1 1 1 1 1 1 2353700000 1902000000 451700000 7479 911 6970 40014;40015;40016;40017 48055;48056;48057;48058;48059 48058 1122 5 GSSAVGLTAYVMKDPETR Unmodified 1880.9302 0.93021246 911 P33991 MCM4 DNA replication licensing factor MCM4 yes yes 0 0 0 1 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 55.203 55.603 3 1.0679E-12 17571 20211116_3435_TMUAki_TMT10x_P_F7 138.66 120.29 23890000 42467000 224070 43446000 27719000 26604000 22351000 29452000 20779000 23089000 30344000 22246000 39630000 2243100 44001000 26457000 28205000 22904000 29611000 21548000 22812000 28975000 5 5 5 5 5 5 5 5 5 5 5 4885000 8938100 70704 8452100 8483300 10312000 7065100 5169000 4519200 5187700 5847400 4548900 8338400 521290 8684600 8102800 10275000 7161800 5515600 4756100 5065800 5599700 1 1 1 1 1 1 1 1 1 1 1 19005000 33529000 153370 34994000 19236000 16292000 15286000 24283000 16260000 17901000 24496000 17697000 31292000 1721800 35316000 18354000 17931000 15742000 24095000 16791000 17746000 23376000 4 4 4 4 4 4 4 4 4 4 4 2618400000 1286300000 1332100000 7480 911 6970 40018;40019;40020 48060;48061;48062;48063;48064 48060 5 GSSCFECTHYQSFLEYR Unmodified 2169.8884 0.888424 761 P21964;P21964-2 COMT Catechol O-methyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 6 1.41 2 1 1 2 53.358 53.549 3 8.3939E-16 14997 20211116_3444_TMUAki_TMT10x_S_F5 153.92 147.66 5194200 9109900 169610 10148000 8331400 11056000 6679900 7127200 6684200 6841100 7515200 4837600 8504400 632640 10293000 7957300 11119000 6862200 7436100 6829300 6693100 7224000 3 3 3 3 3 3 3 3 3 3 3 3705100 6484100 118070 7437600 6858600 9483700 5346900 5088200 4768400 4922400 5312300 3450700 6054000 461390 7550800 6545500 9436400 5484700 5390200 4895600 4814300 5107800 2 2 2 2 2 2 2 2 2 2 2 1489100 2625700 51537 2710300 1472800 1572200 1333000 2039000 1915800 1918700 2202900 1386800 2450400 171260 2742000 1411800 1682400 1377500 2045900 1933700 1878900 2116200 1 1 1 1 1 1 1 1 1 1 1 462370000 269100000 193270000 7481 761 6971 40021;40022;40023 48065;48066;48067;48068 48067 4 GSSGASVAAAAAAAVAVVESMVTATEVAPPPPPVEVPIRK Oxidation (M) 3769.9924 0.99242537 1735 Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 1 1 By MS/MS By MS/MS 2 0 4 2 2 81.12 81.109 4;5 1.6001E-24 26882 20211116_3440_TMUAki_TMT10x_S_F2 132.82 126.72 27093000 42605000 11735 49344000 22464000 26318000 25775000 12980000 13850000 16328000 25594000 25223000 39780000 1661500 49519000 21594000 27932000 25602000 13970000 15028000 15809000 24326000 8 8 1 8 8 8 8 8 8 8 8 15052000 23323000 11735 26066000 12672000 18652000 12473000 7781700 8073900 9312100 14366000 14013000 21773000 989050 26287000 12131000 19214000 12527000 8506300 8629600 9031700 13664000 5 5 1 5 5 5 5 5 5 5 5 12041000 19282000 0 23279000 9791800 7666700 13302000 5198000 5775800 7015600 11228000 11210000 18007000 672450 23232000 9463400 8717800 13076000 5463900 6398700 6776900 10662000 3 3 0 3 3 3 3 3 3 3 3 4882200000 2925800000 1956400000 7482 1735 6972 40024;40025;40026;40027 48069;48070;48071;48072;48073;48074;48075;48076 48075 2334 8 GSSGGSGAKPSDAASEAARPATSTLNR Unmodified 2502.2059 0.20587005 1511 Q04637;Q04637-3;Q04637-8;Q04637-5;Q04637-4;Q04637-9;Q04637-6;Q04637-7 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 2 By MS/MS 5 0 1 1 31.696 31.632 4 1.528E-41 7351 20211116_3433_TMUAki_TMT10x_P_F5 181.14 164.26 237570 313800 5138.4 592350 1583100 896010 406220 462700 633680 207400 518080 221240 293850 43330 589160 1488600 884330 480620 484660 630600 213070 503350 1 1 1 1 1 1 1 1 1 1 1 237570 313800 5138.4 592350 1583100 896010 406220 462700 633680 207400 518080 221240 293850 43330 589160 1488600 884330 480620 484660 630600 213070 503350 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 96061000 96061000 0 7483 1511 6973 40028 48077 48077 1 GSSGVGLTAAVLR Unmodified 1186.667 0.66698555 913 P33993;P33993-3 MCM7 DNA replication licensing factor MCM7 yes no 0 0 0 0 By MS/MS By MS/MS 6.25 3.03 1 3 2 2 48.604 48.429 2 5.4305E-18 13510 20211116_3436_TMUAki_TMT10x_P_F8 149.96 127.22 6436900 11643000 60959 11982000 5347200 5271000 4571800 10895000 11245000 8666500 9910200 5993700 10865000 551610 12099000 5109800 5910100 4884500 10727000 11101000 8556000 9601400 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6436900 11643000 60959 11982000 5347200 5271000 4571800 10895000 11245000 8666500 9910200 5993700 10865000 551610 12099000 5109800 5910100 4884500 10727000 11101000 8556000 9601400 3 3 2 3 3 3 3 3 3 3 3 796520000 0 796520000 7484 913 6974 40029;40030;40031;40032 48078;48079;48080;48081;48082 48079 5 GSSGVGLTAAVTTDQETGER Unmodified 1934.9181 0.91812745 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 0 By MS/MS By MS/MS 2.92 1.14 2 2 5 3 1 7 6 42.263 42.271 2;3 2.7284E-216 12459 20211116_3430_TMUAki_TMT10x_P_F3 467.62 439.93 11185000 17351000 264560 21110000 15002000 16526000 10448000 14021000 15977000 12500000 16383000 10416000 16205000 1114600 21202000 14282000 17062000 11007000 14337000 16026000 12270000 15792000 17 17 10 17 17 17 17 17 17 17 17 5177900 7586600 53243 9235300 9608500 11903000 6689600 7393300 8010700 6154000 7555300 4821000 7085300 468210 9345000 9139300 11860000 6979100 7707500 8075500 6061300 7302400 9 9 5 9 9 9 9 9 9 9 9 6006900 9764800 211320 11875000 5393700 4622900 3758100 6627800 7965900 6345600 8827900 5594500 9119500 646380 11857000 5142800 5201900 4027800 6629100 7950400 6209100 8489200 8 8 5 8 8 8 8 8 8 8 8 3798500000 2334500000 1464100000 7485 799 6975 40033;40034;40035;40036;40037;40038;40039;40040;40041;40042;40043;40044;40045 48083;48084;48085;48086;48087;48088;48089;48090;48091;48092;48093;48094;48095;48096;48097;48098;48099 48090 17 GSSGVGLTAAVTTDQETGERR Unmodified 2091.0192 0.019238477 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 36.167 36.224 3 2.4653E-55 10443 20211116_3430_TMUAki_TMT10x_P_F3 228.68 209.35 142150 238240 0 267970 187110 188620 146680 172040 176320 148290 193490 132330 222410 9356.9 270090 178200 196670 151810 175040 178690 145810 186120 2 2 0 2 2 2 2 2 2 2 2 52196 89518 0 95785 99452 111930 54044 67242 72402 56079 75242 48582 83554 2827.4 97515 94077 112030 57761 70288 72954 55230 72495 1 1 0 1 1 1 1 1 1 1 1 89952 148720 0 172190 87661 76685 92632 104790 103920 92213 118250 83747 138860 6529.5 172570 84120 84644 94050 104750 105730 90579 113630 1 1 0 1 1 1 1 1 1 1 1 19836000 9035100 10801000 7486 799 6976 40046;40047 48100;48101 48100 2 GSSPGIQDTLEAEDGAFETDEAPEDR Unmodified 2735.1682 0.16820672 3201 Q9UNX4 WDR3 WD repeat-containing protein 3 yes yes 0 0 0 0 By MS/MS 1 0 1 1 62.726 62.451 3 2.1256E-30 21179 20211116_3439_TMUAki_TMT10x_S_F1 164.96 157.33 1689700 3384700 14115 3366500 2186000 1992600 1738800 3151800 2992400 2579900 2741200 1573300 3158200 154900 3415100 2085300 2140700 1826000 3128900 2980500 2543200 2652100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1689700 3384700 14115 3366500 2186000 1992600 1738800 3151800 2992400 2579900 2741200 1573300 3158200 154900 3415100 2085300 2140700 1826000 3128900 2980500 2543200 2652100 2 2 1 2 2 2 2 2 2 2 2 373830000 0 373830000 7487 3201 6977 40048 48102;48103 48102 2 GSSPGPRPVEGTPASR Unmodified 1550.7801 0.78011783 1594 Q13112 CHAF1B Chromatin assembly factor 1 subunit B yes yes 0 0 0 1 By MS/MS 5 0 1 1 26.576 26.502 3 0.00074586 5306 20211116_3433_TMUAki_TMT10x_P_F5 67.685 41.567 56333 81174 1266.5 75406 58843 82024 57198 34968 40660 36182 63267 52461 75722 5885.9 77433 56457 82095 57593 37964 42890 35288 60332 1 1 1 1 1 1 1 1 1 1 1 56333 81174 1266.5 75406 58843 82024 57198 34968 40660 36182 63267 52461 75722 5885.9 77433 56457 82095 57593 37964 42890 35288 60332 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2019100 2019100 0 7488 1594 6978 40049 48104 48104 1 GSSSYSQLLAATCLTK Unmodified 1685.8294 0.82943578 3132 Q9UIA9 XPO7 Exportin-7 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 66.948 66.638 3 3.4693E-15 21137 20211116_3440_TMUAki_TMT10x_S_F2 134.85 116.02 4391700 6916000 0 7092200 5373600 9255600 6363800 4913800 3970000 4937000 5560400 4088800 6454100 332620 7255100 5174400 9197900 6329200 5215900 4200000 4820800 5314700 1 1 0 1 1 1 1 1 1 1 1 4391700 6916000 0 7092200 5373600 9255600 6363800 4913800 3970000 4937000 5560400 4088800 6454100 332620 7255100 5174400 9197900 6329200 5215900 4200000 4820800 5314700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 914040000 914040000 0 7489 3132 6979 40050;40051 48105;48106 48106 2 GSTAPVGGGAFPTIVER Unmodified 1614.8366 0.83657007 1769 Q15084;Q15084-5;Q15084-3;Q15084-4;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 0 By MS/MS 6 0 1 1 53.615 53.714 3 0.001865 14963 20211116_3434_TMUAki_TMT10x_P_F6 64.83 43.273 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7490 1769 6980 40052 48107 48107 1 GSTDNLMDDIER Oxidation (M) 1380.5827 0.58272315 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 1 0 By MS/MS By MS/MS 1.6 0.49 2 3 2 3 36.9 36.875 2 6.7044E-07 8921 20211116_3440_TMUAki_TMT10x_S_F2 128.87 101.75 3276600 4889100 0 7686900 7738000 4753500 3724700 3380400 4640200 2674400 5094600 3050300 4572500 274120 7600400 7314800 4992600 4016300 3485100 4696700 2641100 4900500 5 5 0 5 5 5 5 5 5 5 5 1681900 2434200 0 3852800 6860500 3994900 2808400 1613700 2124800 1348900 2551600 1565900 2276700 197060 3832400 6475400 4007400 3039400 1752900 2206700 1328300 2448200 2 2 0 2 2 2 2 2 2 2 2 1594700 2454900 0 3834100 877450 758590 916250 1766700 2515400 1325500 2543000 1484400 2295800 77056 3768000 839390 985160 976870 1732200 2490000 1312700 2452300 3 3 0 3 3 3 3 3 3 3 3 795360000 551860000 243500000 7491 1146 6981 40053;40054;40055;40056;40057 48108;48109;48110;48111;48112 48112 1513 5 GSTDNLMDDIER Unmodified 1364.5878 0.58780853 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 51.078 50.908 2 7.209E-60 16414 20211116_3439_TMUAki_TMT10x_S_F1 319.45 294.55 13358000 19524000 76614 30092000 26696000 20154000 15872000 11048000 10229000 10005000 16770000 12436000 18258000 1201400 29804000 25320000 20940000 16491000 11661000 10886000 9814800 15975000 5 5 1 5 5 5 5 5 5 5 5 8440900 12030000 76614 18556000 24541000 18093000 13768000 7857200 7657700 6724000 10619000 7859500 11249000 952670 18463000 23262000 18231000 14340000 8471300 8162900 6613700 10152000 3 3 1 3 3 3 3 3 3 3 3 4916600 7494700 0 11536000 2155700 2060500 2104100 3191100 2571700 3281400 6151000 4576900 7008400 248730 11342000 2057900 2709000 2151400 3190200 2722800 3201000 5822900 2 2 0 2 2 2 2 2 2 2 2 1979600000 1318900000 660770000 7492 1146 6981 40058;40059;40060;40061 48113;48114;48115;48116;48117 48116 5 GSTEGSESYEEDPYLVVNPNYLLED Unmodified 2818.2345 0.23449537 1716 Q14566 MCM6 DNA replication licensing factor MCM6 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 4 2 2 80.861 80.846 2;3 2.8019E-22 26628 20211116_3428_TMUAki_TMT10x_P_F1 145.71 124.87 9449600 15774000 228920 14074000 9522500 13355000 11118000 6517300 8959500 8469100 11364000 8800200 14713000 997810 14467000 9184600 13496000 11127000 7029900 9294500 8191000 10888000 6 6 6 6 6 6 6 6 6 6 6 4482200 6751300 13885 6155300 3618600 8332900 4656600 2818900 3636800 3699500 5016200 4173400 6297400 372450 6354000 3496600 8230700 4637600 3170700 3793400 3576800 4796300 3 3 3 3 3 3 3 3 3 3 3 4967500 9023100 215040 7918600 5903900 5022200 6461400 3698500 5322700 4769600 6347600 4626800 8415400 625360 8112900 5688000 5265200 6489700 3859200 5501100 4614100 6091500 3 3 3 3 3 3 3 3 3 3 3 5381000000 3021100000 2359900000 7493 1716 6982 40062;40063;40064;40065 48118;48119;48120;48121;48122;48123 48118 6 GSTPYGGVKLEDLIVK Unmodified 1674.9192 0.91923707 795 P24752 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes yes 0 0 0 1 By MS/MS 7 0 1 1 64.741 65.384 3 0.00085859 21608 20211116_3435_TMUAki_TMT10x_P_F7 65.231 45.908 8623400 13548000 65275 13338000 10490000 15831000 9126300 9278100 10751000 9834700 9796200 8029700 12641000 801920 13659000 10028000 15827000 9378800 9780700 10832000 9582100 9479600 1 1 1 1 1 1 1 1 1 1 1 8623400 13548000 65275 13338000 10490000 15831000 9126300 9278100 10751000 9834700 9796200 8029700 12641000 801920 13659000 10028000 15827000 9378800 9780700 10832000 9582100 9479600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 678140000 678140000 0 7494 795 6983 40066 48124 48124 1 GSVAEAEDCYNTALR Unmodified 1654.7257 0.72569899 180 O15294;O15294-3;O15294-2 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 45.181 45.064 3 1.3472E-06 13642 20211116_3429_TMUAki_TMT10x_P_F2 95.428 86.699 1672100 2413700 13084 2747600 2297700 2350800 1699600 1907700 1931400 1750200 2109500 1556800 2253500 138090 2773500 2187500 2409300 1762400 1957200 1961000 1715800 2029400 2 2 1 2 2 2 2 2 2 2 2 944440 1173800 13084 1441500 1653200 1813200 1102100 890650 992220 852120 1148700 879460 1096300 100420 1457200 1572100 1803500 1143300 950950 1019800 833810 1103300 1 1 1 1 1 1 1 1 1 1 1 727680 1239900 0 1306100 644530 537590 597520 1017000 939150 898070 960760 677370 1157200 37668 1316300 615420 605840 619130 1006300 941240 882000 926140 1 1 0 1 1 1 1 1 1 1 1 238900000 96789000 142110000 7495 180 6984 40067;40068;40069;40070 48125;48126;48127 48125 3 GSVGAVPSGTSPGGVATTAAAGSR Unmodified 2014.0079 0.0079455095 2033 Q6ZNB6;Q6ZNB6-2 NFXL1 NF-X1-type zinc finger protein NFXL1 yes no 0 0 0 0 By MS/MS By matching 7.5 0.5 1 1 1 1 37.701 38.14 3 5.3092E-17 10362 20211116_3435_TMUAki_TMT10x_P_F7 133.48 121.34 80733 116950 0 128450 150850 165180 101040 91352 90096 76510 93937 75134 109170 3187.7 130780 143100 164350 104750 96162 92272 75335 90499 1 1 0 1 1 1 1 1 1 1 1 80733 116950 0 128450 150850 165180 101040 91352 90096 76510 93937 75134 109170 3187.7 130780 143100 164350 104750 96162 92272 75335 90499 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 52849000 40722000 12127000 7496 2033 6985 40071;40072 48128 48128 1 GSVLEPEGTVEIK Unmodified 1356.7137 0.71366097 1591 Q13085;Q13085-4;Q13085-3;Q13085-2 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 0 0 0 0 By MS/MS 4 0 1 1 53.736 53.784 3 0.041093 16381 20211116_3442_TMUAki_TMT10x_S_F4 45.825 20.608 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7497 1591 6986 40073 48129 48129 1 GSYGDLGGPIITTQVTIPK Unmodified 1916.0255 0.025493054 1329;1330 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 0 By MS/MS By MS/MS 6.26 2.12 2 1 1 2 5 6 10 10 17 73.989 74.009 2;3;4 2.1081E-70 22951 20211116_3436_TMUAki_TMT10x_P_F8 279.77 239.18 204680000 343350000 2295200 333700000 250110000 274570000 249640000 218200000 213160000 231170000 261100000 190580000 320350000 18266000 340230000 239870000 282100000 252120000 225080000 220150000 225230000 250390000 43 43 19 43 43 43 43 43 43 43 43 55316000 90796000 342120 83358000 57681000 104700000 67449000 58776000 58023000 60569000 65610000 51501000 84695000 4267700 85884000 55530000 104310000 67614000 62131000 59710000 59081000 63056000 13 13 4 13 13 13 13 13 13 13 13 149360000 252560000 1953000 250340000 192430000 169870000 182190000 159420000 155130000 170600000 195490000 139080000 235650000 13998000 254340000 184340000 177780000 184500000 162950000 160440000 166150000 187330000 30 30 15 30 30 30 30 30 30 30 30 111900000000 59095000000 52809000000 7498 1329;1330 6987 40074;40075;40076;40077;40078;40079;40080;40081;40082;40083;40084;40085;40086;40087;40088;40089;40090;40091;40092;40093;40094;40095;40096;40097;40098;40099;40100 48130;48131;48132;48133;48134;48135;48136;48137;48138;48139;48140;48141;48142;48143;48144;48145;48146;48147;48148;48149;48150;48151;48152;48153;48154;48155;48156;48157;48158;48159;48160;48161;48162;48163;48164;48165;48166;48167;48168;48169;48170;48171;48172 48140 43 GSYTAQFEHTILLRPTCK Unmodified 2121.0677 0.067708995 1141 P50579;P50579-3;P50579-2 METAP2 Methionine aminopeptidase 2 yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 52.807 52.589 4 7.7136E-24 15352 20211116_3440_TMUAki_TMT10x_S_F2 174.68 159.05 44467000 73170000 780890 84203000 41910000 49018000 38671000 28752000 25518000 30106000 45188000 41408000 68317000 3726200 84596000 40148000 51651000 38988000 30297000 27234000 29347000 42982000 7 7 5 7 7 7 7 7 7 7 7 21167000 32644000 442120 39154000 21626000 29273000 19363000 13096000 12252000 14665000 20201000 19712000 30484000 2131300 39336000 20704000 30068000 19539000 14179000 13058000 14258000 19241000 3 3 2 3 3 3 3 3 3 3 3 23300000 40527000 338770 45049000 20283000 19745000 19309000 15656000 13266000 15441000 24986000 21697000 37833000 1595000 45260000 19445000 21584000 19450000 16118000 14176000 15089000 23741000 4 4 3 4 4 4 4 4 4 4 4 3221700000 1960900000 1260800000 7499 1141 6988 40101;40102 48173;48174;48175;48176;48177;48178;48179 48176 7 GTAITHALTSASTLCQVEPVGR Unmodified 2268.1532 0.15322954 2581 Q99543;Q99543-2 DNAJC2 DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed yes no 0 0 0 0 By MS/MS 8 0 1 1 56.144 56.277 3 6.2507E-06 16663 20211116_3436_TMUAki_TMT10x_P_F8 83.606 73.685 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7500 2581 6989 40103 48180 48180 1 GTALVLAR Unmodified 799.49159 0.49158736 3322 Q9Y5L0;Q9Y5L0-3;Q9Y5L0-1 TNPO3 Transportin-3 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 38.147 38.531 2 0.053355 9415 20211116_3436_TMUAki_TMT10x_P_F8 58.119 16.227 2527100 3871100 17650 4100300 3667500 3835400 2835900 2752400 2594200 2573000 3336500 2353000 3613000 232980 4162900 3496200 3899300 2912600 2847800 2676000 2520300 3195600 3 3 1 3 3 3 3 3 3 3 3 1493300 2225700 0 2322900 2733600 2967900 1773200 1596800 1504700 1460100 1910500 1390400 2077100 132230 2372600 2596400 2952900 1840600 1688600 1556900 1431600 1830400 2 2 0 2 2 2 2 2 2 2 2 1033800 1645400 17650 1777400 933930 867480 1062700 1155700 1089500 1112900 1426100 962670 1535800 100760 1790300 899800 946330 1072100 1159200 1119100 1088700 1365300 1 1 1 1 1 1 1 1 1 1 1 57533000 42854000 14679000 7501 3322 6990 40104;40105;40106 48181;48182 48181 2 GTATFDGTAIANAVVK Unmodified 1534.7991 0.79912193 1183 P52701;P52701-3;P52701-4 MSH6 DNA mismatch repair protein Msh6 yes no 0 0 0 0 By MS/MS By MS/MS 6.75 0.433 1 3 1 3 63.029 63.398 2;3 1.5171E-14 21366 20211116_3446_TMUAki_TMT10x_S_F7 129.34 104.49 14352000 23563000 111000 23034000 17145000 22678000 16644000 21253000 18472000 18176000 19822000 13364000 21985000 1252100 23531000 16428000 23093000 16965000 21589000 18760000 17879000 19080000 3 3 2 3 3 3 3 3 3 3 3 6103300 9505100 31102 9652800 8082100 14456000 8122600 9382000 7914200 7810400 8218100 5683000 8869800 562700 9908900 7752400 14316000 8230600 9748000 8071200 7692800 7918300 1 1 1 1 1 1 1 1 1 1 1 8249000 14058000 79894 13382000 9062500 8222100 8520900 11871000 10558000 10366000 11604000 7680600 13115000 689410 13622000 8675500 8776400 8734500 11841000 10689000 10186000 11161000 2 2 1 2 2 2 2 2 2 2 2 1573200000 629070000 944090000 7502 1183 6991 40107;40108;40109;40110 48183;48184;48185;48186 48186 4 GTAVVNGEFK Unmodified 1020.524 0.52400971 862 P30048;P30048-2 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes no 0 0 0 0 By MS/MS 5 0 1 1 41.498 41.622 2 1.9192E-09 10160 20211116_3444_TMUAki_TMT10x_S_F5 182.64 135.57 3461400 5382600 1809 5916700 2801500 2370800 3845700 2322400 2539400 2558900 3856700 3222800 5024600 258100 5945200 2711100 2632900 3805900 2370800 2687400 2489400 3679700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3461400 5382600 1809 5916700 2801500 2370800 3845700 2322400 2539400 2558900 3856700 3222800 5024600 258100 5945200 2711100 2632900 3805900 2370800 2687400 2489400 3679700 2 2 1 2 2 2 2 2 2 2 2 138660000 0 138660000 7503 862 6992 40111 48187;48188 48187 2 GTAYTFFTPGNLK Unmodified 1415.7085 0.70851601 2368 Q92841;Q92841-3;Q92841-1;Q92841-2 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 2 4 4 6 4 67.978 67.689 2;3 6.5685E-30 23253 20211116_3430_TMUAki_TMT10x_P_F3 251.43 202.79 31895000 55957000 94157 47531000 43093000 63421000 41190000 44455000 43755000 41553000 45164000 29696000 52182000 2652400 49322000 41262000 63203000 41959000 46069000 44451000 40703000 43524000 10 10 4 10 10 10 10 10 10 10 10 20816000 35166000 94157 30063000 29345000 51337000 29890000 28748000 28567000 27212000 28790000 19382000 32794000 1824100 31348000 28150000 50479000 30249000 30323000 29128000 26640000 27766000 6 6 4 6 6 6 6 6 6 6 6 11079000 20791000 0 17468000 13748000 12084000 11300000 15707000 15188000 14342000 16374000 10314000 19388000 828300 17974000 13112000 12723000 11710000 15746000 15324000 14063000 15759000 4 4 0 4 4 4 4 4 4 4 4 6620900000 4082400000 2538500000 7504 2368 6993 40112;40113;40114;40115;40116;40117;40118;40119;40120;40121 48189;48190;48191;48192;48193;48194;48195;48196;48197;48198;48199;48200 48194 12 GTAYVVYEDIFDAK Unmodified 1589.7613 0.76133944 3269 Q9Y3B4 SF3B6 Splicing factor 3B subunit 6 yes yes 0 0 0 0 By MS/MS By MS/MS 3.2 1.08 1 1 4 3 1 5 5 78.411 78.372 2;3 5.3154E-10 27089 20211116_3429_TMUAki_TMT10x_P_F2 139.86 112.24 40766000 67509000 647700 60390000 43778000 65401000 50239000 42934000 41840000 44847000 50760000 37959000 62967000 3615400 62186000 42152000 65813000 50362000 44843000 43249000 43721000 48690000 8 8 5 8 8 8 8 8 8 8 8 24734000 39923000 551460 35992000 22732000 46599000 28527000 26362000 25853000 26789000 29667000 23032000 37238000 2379100 37154000 21965000 46363000 28550000 27837000 26553000 26146000 28500000 5 5 4 5 5 5 5 5 5 5 5 16033000 27586000 96246 24398000 21046000 18803000 21712000 16572000 15987000 18058000 21093000 14927000 25729000 1236300 25032000 20186000 19450000 21812000 17006000 16696000 17575000 20190000 3 3 1 3 3 3 3 3 3 3 3 6714100000 3551500000 3162600000 7505 3269 6994 40122;40123;40124;40125;40126;40127;40128;40129;40130;40131 48201;48202;48203;48204;48205;48206;48207;48208 48202 8 GTDECAIESIAVAATPIPK Unmodified 1941.9717 0.97174292 1208 P53634 CTSC Dipeptidyl peptidase 1;Dipeptidyl peptidase 1 exclusion domain chain;Dipeptidyl peptidase 1 heavy chain;Dipeptidyl peptidase 1 light chain yes yes 0 0 0 0 By MS/MS By MS/MS 4.4 1.36 1 2 2 2 3 5 5 74.216 74.143 3 3.5428E-13 24282 20211116_3431_TMUAki_TMT10x_P_F4 139.04 122.92 26518000 45966000 448840 41247000 30944000 42406000 32643000 29722000 27422000 30495000 35699000 24693000 42874000 2501500 42430000 29729000 42844000 32861000 30882000 28419000 29751000 34181000 13 13 9 13 13 13 13 13 13 13 13 14214000 23302000 208500 21228000 13983000 27722000 17089000 15155000 13901000 15404000 18476000 13235000 21735000 1192200 21900000 13487000 27558000 17073000 16051000 14444000 15035000 17682000 6 6 2 6 6 6 6 6 6 6 6 12304000 22665000 240340 20019000 16961000 14684000 15554000 14567000 13521000 15090000 17222000 11458000 21139000 1309300 20530000 16242000 15286000 15788000 14832000 13975000 14716000 16499000 7 7 7 7 7 7 7 7 7 7 7 4027200000 1954900000 2072300000 7506 1208 6995 40132;40133;40134;40135;40136;40137;40138;40139;40140;40141 48209;48210;48211;48212;48213;48214;48215;48216;48217;48218;48219;48220;48221;48222;48223;48224 48212 16 GTDRLDLPVTTR Unmodified 1342.7205 0.72047768 2382 Q92974;Q92974-2;Q92974-3 ARHGEF2 Rho guanine nucleotide exchange factor 2 yes no 0 0 0 1 By MS/MS 5 0 1 1 38.335 38.481 3 5.7676E-06 8927 20211116_3444_TMUAki_TMT10x_S_F5 103.85 66.427 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7507 2382 6996 40142 48225 48225 1 GTDSQAMEEEKPEGHV Oxidation (M) 1758.7367 0.73665761 1635 Q13451 FKBP5 Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed yes yes 0 0 1 1 By MS/MS 2 0 1 1 30.452 30.222 3 0.00029053 7647 20211116_3429_TMUAki_TMT10x_P_F2 78.249 68.691 205280 345540 2162.5 368550 825010 465380 292180 177230 226180 188620 304310 191130 322510 25664 375800 777660 461650 322180 195080 235760 183740 291140 2 2 1 2 2 2 2 2 2 2 2 205280 345540 2162.5 368550 825010 465380 292180 177230 226180 188620 304310 191130 322510 25664 375800 777660 461650 322180 195080 235760 183740 291140 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18826000 18826000 0 7508 1635 6997 40143 48226;48227 48227 2198 2 GTDTVAGLALIK Unmodified 1157.6656 0.66558856 1031 P43490 NAMPT Nicotinamide phosphoribosyltransferase yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 64.183 64.403 2 8.3698E-12 19370 20211116_3434_TMUAki_TMT10x_P_F6 135.86 93.75 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7509 1031 6998 40144;40145 48228;48229 48228 2 GTDTVAGLALIKK Unmodified 1285.7606 0.76055158 1031 P43490 NAMPT Nicotinamide phosphoribosyltransferase yes yes 0 0 0 1 By MS/MS 1 0 1 1 57.914 57.612 3 1.2834E-13 19196 20211116_3439_TMUAki_TMT10x_S_F1 143.98 110.09 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7510 1031 6999 40146 48230 48230 1 GTEAGQVGEPGIPTGEAGPSCSSASDKLPR Unmodified 2911.3618 0.36177834 183 O15355 PPM1G Protein phosphatase 1G yes yes 0 0 0 1 By MS/MS By MS/MS 4.17 0.687 1 3 2 4 2 46.828 46.947 3;4 1.0107E-92 13551 20211116_3442_TMUAki_TMT10x_S_F4 243.94 237.01 5883000 10161000 77479 12926000 13398000 14255000 7270200 11058000 12467000 8686300 9646500 5478100 9491900 522430 13011000 12696000 14368000 7855700 11333000 12355000 8581200 9392900 7 7 3 7 7 7 7 7 7 7 7 3819100 6419600 44564 8265400 12125000 12801000 6317500 7110600 8216700 5421000 6098600 3556200 5997100 338390 8369500 11482000 12633000 6770600 7466200 8200800 5364000 5948700 5 5 2 5 5 5 5 5 5 5 5 2064000 3741600 32915 4660400 1272700 1454100 952670 3947300 4250200 3265400 3547900 1922000 3494800 184030 4641500 1213900 1735100 1085200 3867100 4154700 3217200 3444200 2 2 1 2 2 2 2 2 2 2 2 3852400000 3165500000 686910000 7511 183 7000 40147;40148;40149;40150;40151;40152 48231;48232;48233;48234;48235;48236;48237;48238 48236 8 GTEAPAVVTEEEDDDEETAPPVIAPRPDHTK Unmodified 3314.5426 0.54263906 1606 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes yes 0 0 0 1 By MS/MS By MS/MS 1.89 0.737 3 4 2 4 5 48.622 48.483 4;5;6 4.477E-36 15421 20211116_3430_TMUAki_TMT10x_P_F3 177.73 166.21 21736000 40033000 197450 45131000 35327000 46818000 27036000 32638000 35816000 29552000 33494000 20239000 37374000 1978000 45706000 33670000 47272000 28129000 33807000 35970000 28989000 32383000 18 18 9 18 18 18 18 18 18 18 18 14100000 25427000 65681 29042000 29697000 40448000 22282000 20820000 23334000 18663000 21262000 13128000 23740000 1267000 29543000 28286000 40061000 23022000 22094000 23619000 18316000 20575000 10 10 4 10 10 10 10 10 10 10 10 7636200 14606000 131770 16089000 5630100 6369900 4753900 11818000 12482000 10890000 12233000 7110900 13634000 711050 16163000 5383300 7211100 5107100 11713000 12351000 10674000 11808000 8 8 5 8 8 8 8 8 8 8 8 6720100000 4316800000 2403400000 7512 1606 7001 40153;40154;40155;40156;40157;40158;40159;40160;40161 48239;48240;48241;48242;48243;48244;48245;48246;48247;48248;48249;48250;48251;48252;48253;48254;48255;48256 48246 18 GTEDFIVESLDASFR Unmodified 1684.7944 0.79443049 1029 P43307;P43307-2 SSR1 Translocon-associated protein subunit alpha yes no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 79.286 79.263 2 2.234E-37 26014 20211116_3428_TMUAki_TMT10x_P_F1 241.78 187.36 8498400 14138000 72817 12442000 8053100 12871000 10163000 8182600 8109700 8899500 9710200 7913100 13186000 728000 12819000 7776700 12981000 10135000 8577600 8396900 8662200 9317500 2 2 1 2 2 2 2 2 2 2 2 5702100 9514000 72817 7915000 4659900 9063600 6095600 5143000 5231000 6059100 6270800 5309800 8871600 526010 8204700 4508600 9074400 6081200 5454300 5396400 5879900 6017100 1 1 1 1 1 1 1 1 1 1 1 2796300 4623900 0 4527000 3393200 3807700 4067600 3039600 2878700 2840400 3439300 2603300 4314200 201980 4614400 3268000 3906200 4053900 3123300 3000500 2782300 3300400 1 1 0 1 1 1 1 1 1 1 1 2079300000 842010000 1237300000 7513 1029 7002 40162;40163;40164 48257;48258 48257 2 GTEDITSPHGIPLDLLDR Unmodified 1947.9902 0.99017018 3225 Q9Y265;Q9Y265-2 RUVBL1 RuvB-like 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.71 1.03 1 2 2 2 4 3 65.32 65.145 3 2.8243E-12 23318 20211116_3441_TMUAki_TMT10x_S_F3 132.13 114.91 11402000 19596000 237830 18942000 13979000 15017000 12596000 14267000 13279000 12795000 14908000 10617000 18283000 1144300 19312000 13379000 15524000 12870000 14500000 13537000 12557000 14331000 4 4 3 4 4 4 4 4 4 4 4 2419000 4352600 111430 3857800 2863300 5615600 3162300 3977400 3523700 3482100 3481800 2253200 4059600 310620 3996800 2759700 5575600 3203300 4111800 3567500 3421200 3360100 1 1 1 1 1 1 1 1 1 1 1 8982500 15244000 126400 15084000 11115000 9401500 9433600 10290000 9754800 9312900 11426000 8364100 14223000 833640 15315000 10620000 9948100 9666800 10388000 9969100 9135700 10971000 3 3 2 3 3 3 3 3 3 3 3 1888900000 610840000 1278100000 7514 3225 7003 40165;40166;40167;40168;40169;40170;40171 48259;48260;48261;48262;48263;48264;48265;48266 48263 8 GTEFGIDYNSWEVGPK Unmodified 1797.821 0.82097959 3258 Q9Y312 AAR2 Protein AAR2 homolog yes yes 0 0 0 0 By MS/MS 5 0 1 1 72.852 72.862 3 0.0046068 22901 20211116_3444_TMUAki_TMT10x_S_F5 61.265 48.905 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7515 3258 7004 40172 48267 48267 1 GTEITHAVVIK Unmodified 1166.6659 0.66592292 2588 Q99613;Q99613-2;B5ME19 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.707 1 2 5 2 6 36.034 36.153 3 1.1934E-05 8750 20211116_3445_TMUAki_TMT10x_S_F6 103.34 68.454 7970400 12254000 45187 14184000 12269000 12351000 9014500 9486300 8883900 8299500 10449000 7420800 11442000 661840 14306000 11679000 12631000 9309900 9754100 9099100 8154600 10032000 7 7 3 7 7 7 7 7 7 7 7 4469200 6830600 0 7954600 9268200 9477700 5866800 5715100 5024900 4828800 5935800 4160500 6377900 340270 8058400 8794900 9476800 6102700 5974100 5181100 4752600 5697900 2 2 0 2 2 2 2 2 2 2 2 3501300 5423600 45187 6229500 3001000 2873200 3147700 3771200 3859100 3470700 4513400 3260300 5063800 321580 6248000 2883700 3154200 3207200 3780000 3918100 3402000 4333700 5 5 3 5 5 5 5 5 5 5 5 566400000 318290000 248110000 7516 2588 7005 40173;40174;40175;40176;40177;40178;40179;40180 48268;48269;48270;48271;48272;48273;48274;48275;48276 48275 9 GTEITHAVVIKK Unmodified 1294.7609 0.76088593 2588 Q99613;Q99613-2;B5ME19 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 0 0 0 1 By MS/MS 8 0 1 1 24.263 24.453 3 0.05198 4206 20211116_3447_TMUAki_TMT10x_S_F8 45.915 29.284 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7517 2588 7006 40181 48277 48277 1 GTEPFVTGVR Unmodified 1061.5506 0.55055881 1214 P53992 SEC24C Protein transport protein Sec24C yes yes 0 0 0 0 By MS/MS 3 0 1 1 39.931 39.984 2 0.0013736 11910 20211116_3430_TMUAki_TMT10x_P_F3 90.696 56.383 239160 357360 6098.6 438170 661140 559180 308620 292390 331590 271560 338020 222730 333760 31422 443110 625440 556190 332190 310120 336560 266080 325870 1 1 1 1 1 1 1 1 1 1 1 239160 357360 6098.6 438170 661140 559180 308620 292390 331590 271560 338020 222730 333760 31422 443110 625440 556190 332190 310120 336560 266080 325870 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16313000 16313000 0 7518 1214 7007 40182 48278 48278 1 GTFPDAR Unmodified 762.36605 0.3660525 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 31.968 31.723 2 0.0030015 9665 20211116_3441_TMUAki_TMT10x_S_F3 120.62 79.319 594700 1018000 0 1002700 652890 535310 769900 449610 556120 489640 741070 553680 949870 43934 1017100 628560 572240 768200 462660 581670 476560 709160 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 594700 1018000 0 1002700 652890 535310 769900 449610 556120 489640 741070 553680 949870 43934 1017100 628560 572240 768200 462660 581670 476560 709160 1 1 0 1 1 1 1 1 1 1 1 67626000 0 67626000 7519 1779 7008 40183;40184 48279;48280 48280 2 GTGASGSFK Unmodified 810.38718 0.38718187 606;695;693;694 P10412;Q02539;P22492;P16401;P16403;P16402 HIST1H1E;HIST1H1A;HIST1H1T;HIST1H1B;HIST1H1C;HIST1H1D Histone H1.4;Histone H1.1;Histone H1t;Histone H1.5;Histone H1.2;Histone H1.3 no no 0 0 0 0 By MS/MS By MS/MS 3.2 1.83 2 1 2 3 2 30.013 30.025 2 0.00065868 7514 20211116_3433_TMUAki_TMT10x_P_F5 115.71 65.674 6096300 10671000 140430 8527000 8702300 13002000 4551300 6375100 6631700 5445300 8249300 5677300 9949200 672270 8917300 8248300 12820000 4898000 6788300 6713000 5356500 7907700 3 3 2 3 3 3 3 3 3 3 3 3872300 6650600 101720 4953800 5975300 10873000 1931700 3846800 4261700 3492500 5001100 3606200 6199400 444760 5262100 5633900 10554000 2243000 4255200 4259800 3425500 4801500 2 2 1 2 2 2 2 2 2 2 2 2224000 4020400 38712 3573200 2727000 2128900 2619500 2528300 2370000 1952800 3248200 2071000 3749800 227510 3655200 2614400 2266800 2655000 2533200 2453200 1931000 3106300 1 1 1 1 1 1 1 1 1 1 1 409720000 244640000 165080000 7520 606;693;695;694 7009 40185;40186;40187;40188;40189 48281;48282;48283;48284 48283 4 GTGEAEEEYVGPR Unmodified 1392.6157 0.61573784 1669 Q13895 BYSL Bystin yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 5 3 2 34.429 34.424 2;3 1.2938E-33 7754 20211116_3428_TMUAki_TMT10x_P_F1 227.14 203.61 556280 916820 1029.4 1129400 566690 490980 503160 640860 854510 629250 892690 517950 856280 45974 1127600 541750 542920 524580 643670 855290 615040 859960 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 556280 916820 1029.4 1129400 566690 490980 503160 640860 854510 629250 892690 517950 856280 45974 1127600 541750 542920 524580 643670 855290 615040 859960 2 2 1 2 2 2 2 2 2 2 2 117540000 78818000 38726000 7521 1669 7010 40190;40191;40192;40193;40194 48285;48286;48287 48285 3 GTGGVDTAAVGGVFDVSNADR Unmodified 1963.9235 0.92354718 642 P12277 CKB Creatine kinase B-type yes yes 0 0 0 0 By MS/MS By MS/MS 3.64 0.881 1 4 4 2 4 7 59.783 59.673 2;3 2.7505E-203 18789 20211116_3442_TMUAki_TMT10x_S_F4 451.12 414.69 42653000 71017000 545690 68350000 48593000 66066000 47496000 60272000 56437000 57491000 59860000 39716000 66256000 3615100 69882000 46584000 67315000 48511000 61490000 57146000 56263000 57639000 17 17 9 17 17 17 17 17 17 17 17 17058000 26587000 284760 26542000 21943000 37509000 21986000 21813000 20556000 20876000 21937000 15884000 24809000 1420600 27245000 21057000 37183000 22255000 22942000 21024000 20427000 21119000 7 7 4 7 7 7 7 7 7 7 7 25595000 44429000 260930 41807000 26649000 28557000 25509000 38459000 35881000 36615000 37923000 23832000 41448000 2194500 42637000 25528000 30132000 26256000 38548000 36122000 35836000 36520000 10 10 5 10 10 10 10 10 10 10 10 17589000000 8509900000 9079100000 7522 642 7011 40195;40196;40197;40198;40199;40200;40201;40202;40203;40204;40205 48288;48289;48290;48291;48292;48293;48294;48295;48296;48297;48298;48299;48300;48301;48302;48303;48304;48305 48300 18 GTGIVSAPVPK Unmodified 1024.5917 0.59169534 687 P15880 RPS2 40S ribosomal protein S2 yes yes 0 0 0 0 By MS/MS By MS/MS 7.09 0.793 3 4 4 5 6 43.349 43.638 2;3 3.5581E-12 11534 20211116_3436_TMUAki_TMT10x_P_F8 179.1 128.49 14615000 24289000 107530 24325000 28363000 26853000 17255000 17519000 19198000 15436000 20211000 13608000 22664000 1391900 24851000 26916000 26991000 18143000 18221000 19482000 15162000 19466000 10 10 5 10 10 10 10 10 10 10 10 10308000 16852000 42747 16913000 24368000 23469000 13195000 12445000 13657000 11024000 14152000 9597700 15725000 1013400 17348000 23082000 23257000 13983000 13167000 13891000 10825000 13636000 5 5 2 5 5 5 5 5 5 5 5 4306400 7436800 64780 7412100 3994700 3383900 4059500 5074800 5541200 4411800 6059400 4009800 6939200 378460 7503100 3833600 3733800 4160200 5054500 5590700 4336100 5829200 5 5 3 5 5 5 5 5 5 5 5 2660600000 1638900000 1021700000 7523 687 7012 40206;40207;40208;40209;40210;40211;40212;40213;40214;40215;40216 48306;48307;48308;48309;48310;48311;48312;48313;48314;48315;48316;48317 48310 12 GTGSHPWTMAPPPGSTPSR Oxidation (M) 1935.8897 0.88974463 210 O43347 MSI1 RNA-binding protein Musashi homolog 1 yes yes 0 0 1 0 By MS/MS 1 0 1 1 32.641 32.641 3 1.8759E-08 7026 20211116_3428_TMUAki_TMT10x_P_F1 107.15 99.371 48438 85449 0 111540 164300 128470 80443 49675 58254 49619 78746 45097 79831 5142.9 112200 155400 128060 85295 54481 60962 48463 75329 1 1 0 1 1 1 1 1 1 1 1 48438 85449 0 111540 164300 128470 80443 49675 58254 49619 78746 45097 79831 5142.9 112200 155400 128060 85295 54481 60962 48463 75329 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16538000 16538000 0 7524 210 7013 40217 48318 48318 164 1 GTGVIQLYEIQHGDLK Unmodified 1769.9312 0.93119874 2523 Q96MX6;Q96MX6-2 WDR92 WD repeat-containing protein 92 yes no 0 0 0 0 By MS/MS 6 0 1 1 58.918 58.978 3 0.00065241 17141 20211116_3434_TMUAki_TMT10x_P_F6 63.691 44.858 2774100 4755200 126100 4825900 4025300 5969500 3457300 4058800 3792900 3329400 3712300 2583900 4437300 365040 4935300 3853000 5967900 3547000 4201300 3841100 3281700 3583600 1 1 1 1 1 1 1 1 1 1 1 2774100 4755200 126100 4825900 4025300 5969500 3457300 4058800 3792900 3329400 3712300 2583900 4437300 365040 4935300 3853000 5967900 3547000 4201300 3841100 3281700 3583600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 447770000 447770000 0 7525 2523 7014 40218 48319 48319 1 GTGVVTSVPSDSPDDIAALR Unmodified 1955.98 0.97999942 3064 Q9P2J5;Q9P2J5-2 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 57.471 57.615 2;3 6.134E-62 19174 20211116_3430_TMUAki_TMT10x_P_F3 228.03 194.03 6972800 12060000 0 10519000 9851300 16673000 8261300 8824900 10607000 10208000 8631900 6491300 11248000 493430 10932000 9397800 16429000 8535500 9410000 10618000 9912400 8388000 1 1 0 1 1 1 1 1 1 1 1 6972800 12060000 0 10519000 9851300 16673000 8261300 8824900 10607000 10208000 8631900 6491300 11248000 493430 10932000 9397800 16429000 8535500 9410000 10618000 9912400 8388000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 826460000 826460000 0 7526 3064 7015 40219;40220 48320;48321 48320 2 GTHGVIVVYDVTSAESFVNVKR Unmodified 2376.2438 0.24375911 1784 Q15286;Q15286-2 RAB35 Ras-related protein Rab-35 yes no 0 0 0 1 By matching By MS/MS 8 0 2 1 1 62.003 62.099 4 0.00063868 18508 20211116_3447_TMUAki_TMT10x_S_F8 61.89 52.36 4952400 9164700 191380 6549000 5905000 5683300 5421800 7157000 6488400 7164600 6822000 4612600 8541900 602290 6852800 5661400 5876300 5557800 7202600 6566000 6997100 6570600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4952400 9164700 191380 6549000 5905000 5683300 5421800 7157000 6488400 7164600 6822000 4612600 8541900 602290 6852800 5661400 5876300 5557800 7202600 6566000 6997100 6570600 1 1 1 1 1 1 1 1 1 1 1 1333900000 733520000 600410000 7527 1784 7016 40221;40222 48322 48322 1 GTIEILSDVQLIK Unmodified 1427.8235 0.82354577 508 P05388;Q8NHW5 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 0 0 0 0 By MS/MS By MS/MS 5.6 1.02 2 2 4 2 5 5 78.268 78.266 2;3 2.011E-25 25991 20211116_3431_TMUAki_TMT10x_P_F4 230.95 173.35 35185000 57207000 153200 53436000 40673000 56318000 42451000 37349000 36279000 40349000 43793000 32759000 53366000 2806900 54823000 39032000 56769000 42776000 39021000 37444000 39284000 42012000 7 7 4 7 7 7 7 7 7 7 7 20748000 32238000 84229 31340000 22128000 41444000 25130000 22658000 21508000 24602000 25650000 19317000 30078000 1612800 32187000 21285000 41175000 25221000 24043000 22187000 23947000 24615000 4 4 2 4 4 4 4 4 4 4 4 14437000 24970000 68973 22096000 18545000 14874000 17322000 14692000 14771000 15747000 18142000 13442000 23289000 1194000 22637000 17747000 15594000 17555000 14978000 15258000 15336000 17397000 3 3 2 3 3 3 3 3 3 3 3 8360300000 3596200000 4764100000 7528 508 7017 40223;40224;40225;40226;40227;40228;40229;40230;40231;40232 48323;48324;48325;48326;48327;48328;48329;48330 48323 8 GTINFLHADCDK Unmodified 1389.6347 0.63469914 2647 Q9BS26 ERP44 Endoplasmic reticulum resident protein 44 yes yes 0 0 0 0 By MS/MS 5 0 1 1 46.491 46.655 3 0.10474 12172 20211116_3444_TMUAki_TMT10x_S_F5 34.432 18.541 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7529 2647 7018 40233 48331 48331 1 GTIQVITQGTSLK Unmodified 1344.7613 0.76127986 201 O43175 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 0 By MS/MS By MS/MS 3.92 3.1 4 4 1 4 7 6 55.38 55.348 2;3 1.3091E-65 15799 20211116_3447_TMUAki_TMT10x_S_F8 332.69 260.46 66308000 103310000 664940 116870000 105070000 106980000 74644000 94867000 94636000 85478000 97704000 61742000 96451000 6390200 118120000 100010000 109320000 77925000 96784000 95510000 83869000 94157000 14 14 8 14 14 14 14 14 14 14 14 29654000 43664000 553510 49826000 65527000 74661000 43469000 39714000 41503000 36329000 42801000 27613000 40766000 3327500 50767000 62300000 73743000 45185000 42041000 42354000 35620000 41248000 6 6 4 6 6 6 6 6 6 6 6 36655000 59647000 111430 67047000 39547000 32320000 31175000 55153000 53133000 49149000 54903000 34129000 55685000 3062600 67357000 37708000 35581000 32740000 54744000 53155000 48249000 52908000 8 8 4 8 8 8 8 8 8 8 8 14125000000 8467600000 5657000000 7530 201 7019 40234;40235;40236;40237;40238;40239;40240;40241;40242;40243;40244;40245;40246 48332;48333;48334;48335;48336;48337;48338;48339;48340;48341;48342;48343;48344;48345;48346 48346 15 GTITVSAQELK Unmodified 1145.6292 0.62920306 2608 Q99829 CPNE1 Copine-1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 4 4 4 4 48.332 48.481 2;3 9.5561E-15 12920 20211116_3444_TMUAki_TMT10x_S_F5 194.76 145.34 21733000 33324000 112570 36744000 29725000 28066000 23187000 18269000 17784000 18423000 24600000 20234000 31107000 1738400 37114000 28326000 28907000 23694000 19074000 18570000 17986000 23520000 9 9 4 9 9 9 9 9 9 9 9 11698000 17754000 88648 19452000 19460000 20335000 13229000 9638900 9339500 9848800 13228000 10892000 16573000 1007100 19737000 18498000 20421000 13624000 10346000 9809500 9610200 12640000 5 5 3 5 5 5 5 5 5 5 5 10034000 15570000 23917 17292000 10265000 7730400 9957900 8630500 8444000 8574200 11373000 9342100 14535000 731320 17376000 9828100 8485200 10070000 8727800 8760500 8376300 10880000 4 4 1 4 4 4 4 4 4 4 4 1667000000 863140000 803900000 7531 2608 7020 40247;40248;40249;40250;40251;40252;40253;40254 48347;48348;48349;48350;48351;48352;48353;48354;48355 48352 9 GTITVSAQELKDNR Unmodified 1530.8002 0.80018457 2608 Q99829 CPNE1 Copine-1 yes yes 0 0 0 1 By MS/MS 5.5 0.5 1 1 2 42.22 42.366 3 3.5095E-06 10620 20211116_3445_TMUAki_TMT10x_S_F6 106.79 82.803 647950 1202900 2504.8 1034000 792900 969170 779280 1580400 1511800 1362100 1202300 603330 1121800 58084 1065800 760080 1005100 813850 1569400 1494900 1339300 1169400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 647950 1202900 2504.8 1034000 792900 969170 779280 1580400 1511800 1362100 1202300 603330 1121800 58084 1065800 760080 1005100 813850 1569400 1494900 1339300 1169400 1 1 1 1 1 1 1 1 1 1 1 147840000 0 147840000 7532 2608 7021 40255;40256 48356 48356 1 GTLDPVEK Unmodified 857.44945 0.44944778 615 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 By MS/MS By MS/MS 3.38 1.73 2 2 4 2 1 1 1 5 8 39.35 39.321 2;3 0.00043757 12950 20211116_3441_TMUAki_TMT10x_S_F3 148.99 95.493 26046000 46213000 222000 39696000 42824000 41406000 36256000 20339000 22468000 20936000 32465000 24253000 43098000 2567900 40983000 40908000 41602000 36692000 21760000 23816000 20423000 31009000 13 13 10 13 13 13 13 13 13 13 13 17779000 32161000 155970 27055000 32073000 33727000 25127000 13469000 14817000 14386000 22082000 16555000 29990000 1793800 28061000 30586000 33492000 25532000 14744000 15783000 14012000 21077000 6 6 4 6 6 6 6 6 6 6 6 8267100 14053000 66032 12641000 10751000 7678800 11129000 6869900 7651200 6550400 10383000 7697900 13107000 774060 12922000 10322000 8110600 11161000 7016100 8032900 6410700 9931600 7 7 6 7 7 7 7 7 7 7 7 1771700000 809680000 961980000 7533 615 7022 40257;40258;40259;40260;40261;40262;40263;40264;40265;40266;40267;40268;40269 48357;48358;48359;48360;48361;48362;48363;48364;48365;48366;48367;48368;48369;48370;48371 48366 15 GTLGGLFSQILQGEDIVR Unmodified 1902.0211 0.021076378 2744 Q9BZZ5-2;Q9BZZ5;Q9BZZ5-3;Q9BZZ5-6;Q9BZZ5-5;Q9BZZ5-1 API5 Apoptosis inhibitor 5 yes no 0 0 0 0 By MS/MS By MS/MS 6 2.52 2 1 1 3 4 4 7 80.94 80.948 2;3 6.8173E-118 26187 20211116_3447_TMUAki_TMT10x_S_F8 372.66 326.83 7692200 11420000 91034 11043000 7808500 11016000 9918200 7174400 7530000 8404900 9313500 7161800 10655000 591360 11292000 7537000 11137000 9876200 7525100 7828300 8158000 8929200 6 6 2 6 6 6 6 6 6 6 6 2947100 4182800 73731 4126500 2900700 5393000 3244200 2617600 3012100 3154000 3482600 2744300 3902800 273220 4232600 2791900 5353600 3265600 2817500 3091200 3058200 3345000 2 2 1 2 2 2 2 2 2 2 2 4745100 7237300 17303 6916400 4907700 5622500 6674000 4556800 4517900 5251000 5830900 4417500 6752000 318140 7059200 4745100 5783700 6610600 4707600 4737100 5099800 5584200 4 4 1 4 4 4 4 4 4 4 4 5615300000 2020400000 3594800000 7534 2744 7023 40270;40271;40272;40273;40274;40275;40276;40277;40278;40279;40280 48372;48373;48374;48375;48376;48377;48378;48379;48380;48381 48381 10 GTLPAVEPFQR Unmodified 1213.6455 0.64552182 600 P0DPB6 yes yes 0 0 0 0 By MS/MS 6 0 1 1 51.554 51.686 2 0.0046359 14496 20211116_3445_TMUAki_TMT10x_S_F6 70.977 27.95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7535 600 7024 40281 48382 48382 1 GTLSDEHAGVISVLAQQAAK Unmodified 1994.0433 0.043268383 221 O43504 LAMTOR5 Ragulator complex protein LAMTOR5 yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 59.71 59.941 3 5.3484E-16 19909 20211116_3446_TMUAki_TMT10x_S_F7 128.59 115.55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7536 221 7025 40282;40283;40284 48383;48384;48385 48384 3 GTLSGWILSK Unmodified 1060.5917 0.59169534 834 P27824;P27824-2 CANX Calnexin yes no 0 0 0 0 By MS/MS By MS/MS 3 0.707 2 4 2 4 4 70.361 70.126 2;3 3.9472E-11 24312 20211116_3430_TMUAki_TMT10x_P_F3 211.27 146.23 83935000 132360000 1177800 141810000 99443000 108360000 107350000 45590000 37325000 56190000 93213000 78160000 123540000 8210300 143500000 95617000 111050000 106310000 49838000 43020000 54442000 88189000 10 10 8 10 10 10 10 10 10 10 10 46604000 71927000 505530 77116000 63871000 75791000 67176000 26396000 22198000 31469000 50318000 43396000 67135000 4513500 78285000 61352000 76182000 66575000 29483000 25549000 30525000 47669000 6 6 4 6 6 6 6 6 6 6 6 37330000 60435000 672220 64691000 35573000 32573000 40178000 19193000 15127000 24722000 42896000 34763000 56408000 3696800 65215000 34265000 34864000 39738000 20355000 17470000 23917000 40520000 4 4 4 4 4 4 4 4 4 4 4 7839600000 4096200000 3743400000 7537 834 7026 40285;40286;40287;40288;40289;40290;40291;40292 48386;48387;48388;48389;48390;48391;48392;48393;48394;48395 48388 10 GTLTLCPYHSDR Unmodified 1418.6612 0.66124824 1609 Q13200;Q13200-3;Q13200-2 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 1.5 1 2 1 2 2 36.089 36.142 3 1.6159E-06 7442 20211116_3434_TMUAki_TMT10x_P_F6 117.2 97.104 1190500 1941900 19374 2070300 2232500 2083400 1290300 1570600 1761200 1506500 1711100 1108600 1812500 131350 2103200 2118100 2110100 1372700 1620900 1769300 1473900 1652200 4 4 4 4 4 4 4 4 4 4 4 631880 1057000 10700 1135800 1655200 1574900 796650 786470 940780 786250 921060 588420 986560 76692 1159700 1566200 1559600 857430 839420 950080 767900 889120 2 2 2 2 2 2 2 2 2 2 2 558630 884950 8673.9 934530 577220 508490 493670 784160 820390 720210 790010 520200 825940 54658 943500 551890 550490 515230 781450 819230 706030 763040 2 2 2 2 2 2 2 2 2 2 2 169040000 95252000 73790000 7538 1609 7027 40293;40294;40295;40296 48396;48397;48398;48399 48397 4 GTLVQTK Unmodified 745.4334 0.43340378 606;695;693;694 P10412;Q02539;P16401;P16403;P16402 HIST1H1E;HIST1H1A;HIST1H1B;HIST1H1C;HIST1H1D Histone H1.4;Histone H1.1;Histone H1.5;Histone H1.2;Histone H1.3 no no 0 0 0 0 By MS/MS By MS/MS 4 2.04 2 2 1 1 2 3 1 6 6 30.201 30.22 2 0.0013024 8333 20211116_3433_TMUAki_TMT10x_P_F5 173.68 84.306 33721000 55699000 136230 50446000 44348000 58743000 35357000 33532000 35875000 32632000 43251000 31398000 51954000 2980000 51958000 42299000 58765000 36350000 35339000 36736000 31907000 41494000 6 6 3 6 6 6 6 6 6 6 6 23067000 37277000 70911 32453000 32912000 48930000 24427000 20877000 21399000 20570000 27358000 21477000 34765000 2032900 33694000 31344000 48200000 25127000 22633000 22113000 20103000 26207000 4 4 2 4 4 4 4 4 4 4 4 10654000 18422000 65317 17993000 11435000 9813300 10930000 12656000 14477000 12062000 15893000 9920300 17188000 947090 18264000 10955000 10566000 11223000 12706000 14622000 11805000 15287000 2 2 1 2 2 2 2 2 2 2 2 1813200000 1258100000 555080000 7539 606;693;695;694 7028 40297;40298;40299;40300;40301;40302;40303;40304;40305;40306;40307;40308 48400;48401;48402;48403;48404;48405;48406;48407;48408;48409 48404 10 GTMDPALR Oxidation (M) 875.4171 0.41710179 425 O95373 IPO7 Importin-7 yes yes 0 0 1 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 28.873 28.619 2 0.069845 8549 20211116_3441_TMUAki_TMT10x_S_F3 59.205 31.68 223910 374330 908.21 392890 288060 370570 264190 174470 216440 209510 284910 208470 349360 17888 399170 275500 374480 267750 188330 224710 203170 272720 2 2 1 2 2 2 2 2 2 2 2 144150 230410 0 242570 205730 262100 169380 104810 125670 122430 159600 134200 215040 10393 246890 196190 262270 172350 115030 130970 118850 152910 1 1 0 1 1 1 1 1 1 1 1 79761 143920 908.21 150330 82331 108470 94817 69661 90768 87073 125310 74272 134310 7495.1 152280 79312 112210 95399 73306 93743 84323 119810 1 1 1 1 1 1 1 1 1 1 1 14304000 10651000 3653500 7540 425 7029 40309;40310 48410 48410 318 1 GTMDPALR Unmodified 859.42219 0.42218717 425 O95373 IPO7 Importin-7 yes yes 0 0 0 0 By MS/MS 3 0 1 1 33.873 33.633 2 0.074485 10470 20211116_3441_TMUAki_TMT10x_S_F3 60.788 45.349 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7541 425 7029 40311 48411 48411 1 GTMTTGHNVADLVVILK Oxidation (M) 1783.9502 0.95021962 1575 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 1 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 61.954 62.179 3 1.0318E-07 19031 20211116_3436_TMUAki_TMT10x_P_F8 107.62 75.561 16915000 27020000 80753 25946000 19597000 31077000 19919000 25665000 24815000 24652000 23925000 15749000 25209000 1477100 26622000 18801000 31221000 20340000 26337000 24999000 24119000 23107000 4 4 2 4 4 4 4 4 4 4 4 8302700 12994000 7080.5 12966000 9658400 19971000 10550000 12857000 12020000 12326000 11551000 7730400 12124000 679220 13335000 9281500 19753000 10700000 13415000 12147000 12060000 11157000 2 2 1 2 2 2 2 2 2 2 2 8611800 14026000 73672 12980000 9938500 11106000 9369400 12808000 12795000 12326000 12374000 8019000 13084000 797890 13287000 9519400 11468000 9639600 12922000 12852000 12058000 11949000 2 2 1 2 2 2 2 2 2 2 2 2327500000 657980000 1669500000 7542 1575 7030 40312;40313;40314 48412;48413;48414;48415 48412 2122 4 GTPEQPQCGFSNAVVQILR Unmodified 2100.0422 0.042222526 2099 Q86SX6 GLRX5 Glutaredoxin-related protein 5, mitochondrial yes yes 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 69.757 69.812 3 2.3232E-08 24049 20211116_3446_TMUAki_TMT10x_S_F7 103.88 92.766 15421000 26890000 208050 24657000 20100000 18014000 18730000 16961000 14659000 16517000 20204000 14360000 25083000 1425900 25213000 19244000 18738000 18945000 17285000 15288000 16150000 19319000 6 6 4 6 6 6 6 6 6 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15421000 26890000 208050 24657000 20100000 18014000 18730000 16961000 14659000 16517000 20204000 14360000 25083000 1425900 25213000 19244000 18738000 18945000 17285000 15288000 16150000 19319000 6 6 4 6 6 6 6 6 6 6 6 1210400000 0 1210400000 7543 2099 7031 40315;40316 48416;48417;48418;48419;48420;48421 48418 6 GTPLISPLIK Unmodified 1037.6485 0.64848194 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 3.78 3.01 2 4 3 5 4 63.608 63.341 2;3 4.1449E-14 19711 20211116_3440_TMUAki_TMT10x_S_F2 228.4 177.7 48758000 76040000 90904 79817000 54039000 57876000 43428000 50685000 48866000 45817000 54871000 45396000 70967000 3855100 80831000 51531000 60152000 44774000 51750000 49688000 44948000 52746000 5 5 2 5 5 5 5 5 5 5 5 25122000 37844000 0 38946000 33567000 40544000 25299000 24123000 23196000 22751000 26108000 23389000 35316000 1916100 39678000 31959000 40836000 26029000 25314000 23793000 22276000 25096000 2 2 0 2 2 2 2 2 2 2 2 23636000 38196000 90904 40870000 20472000 17333000 18129000 26562000 25671000 23066000 28763000 22008000 35651000 1938900 41154000 19572000 19317000 18745000 26436000 25895000 22671000 27651000 3 3 2 3 3 3 3 3 3 3 3 6135900000 2777200000 3358600000 7544 1092 7032 40317;40318;40319;40320;40321;40322;40323;40324;40325 48422;48423;48424;48425;48426;48427;48428;48429;48430;48431;48432 48430 11 GTPQQIDYAR Unmodified 1147.5622 0.56218613 2408;2407 Q96AE4-2;Q96AE4 FUBP1 Far upstream element-binding protein 1 no no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 33.143 33.081 2 4.0947E-09 7623 20211116_3431_TMUAki_TMT10x_P_F4 154.84 114.78 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7545 2408;2407 7033 40326;40327;40328 48433;48434;48435 48433 3 GTPWEGGLFK Unmodified 1090.5447 0.54474515 1408 P63279 UBE2I SUMO-conjugating enzyme UBC9 yes yes 0 0 0 0 By MS/MS By MS/MS 7.33 0.943 1 2 2 1 64.177 64.25 2 2.082E-08 19286 20211116_3434_TMUAki_TMT10x_P_F6 125.82 86.669 16510000 29172000 94344 29303000 25683000 29193000 23274000 15373000 13471000 15815000 23264000 15372000 27221000 1452800 29883000 24563000 29436000 23431000 16341000 14481000 15428000 22139000 3 3 1 3 3 3 3 3 3 3 3 9975000 17584000 0 17468000 18177000 23694000 17250000 9660500 8587000 9925400 13844000 9286600 16408000 809480 17922000 17397000 23439000 17278000 10538000 9301400 9682800 13192000 2 2 0 2 2 2 2 2 2 2 2 6534700 11588000 94344 11834000 7505700 5498900 6024000 5712800 4884400 5889600 9420600 6085100 10814000 643290 11961000 7165300 5997500 6152600 5802800 5179900 5744800 8947300 1 1 1 1 1 1 1 1 1 1 1 1545500000 886640000 658890000 7546 1408 7034 40329;40330;40331 48436;48437;48438;48439 48436 4 GTQGVVTNFEIFR Unmodified 1466.7518 0.75177781 1249 P55884;P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 0 0 0 0 By MS/MS By MS/MS 7.11 0.737 2 4 3 4 5 64.616 64.863 2;3 1.2335E-43 21876 20211116_3446_TMUAki_TMT10x_S_F7 278.95 244.02 44263000 76164000 141710 68774000 53302000 69177000 50844000 51658000 48141000 49468000 56044000 41210000 71041000 3392300 70689000 51021000 70054000 51618000 53341000 49374000 48403000 53819000 11 11 2 11 11 11 11 11 11 11 11 21836000 36578000 0 32556000 26443000 45436000 26913000 25574000 23737000 24190000 26324000 20329000 34117000 1593900 33690000 25348000 45047000 27176000 26962000 24379000 23682000 25314000 5 5 0 5 5 5 5 5 5 5 5 22427000 39585000 141710 36217000 26859000 23741000 23932000 26085000 24404000 25277000 29720000 20881000 36925000 1798400 36999000 25672000 25008000 24443000 26379000 24995000 24720000 28505000 6 6 2 6 6 6 6 6 6 6 6 9498300000 4565900000 4932400000 7547 1249 7035 40332;40333;40334;40335;40336;40337;40338;40339;40340 48440;48441;48442;48443;48444;48445;48446;48447;48448;48449;48450 48447 11 GTQTYSVLEGDPSENYSK Unmodified 1973.8854 0.88543034 1183 P52701;P52701-3;P52701-4;P52701-2 MSH6 DNA mismatch repair protein Msh6 yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 52.171 52.337 3 3.4831E-08 15353 20211116_3431_TMUAki_TMT10x_P_F4 106.67 93.529 3430600 5541300 1240.2 6578100 7983900 9589700 5228700 4746600 5317300 4194300 5023900 3194100 5174500 338340 6682500 7585400 9474700 5450500 5053900 5395200 4119100 4855400 2 2 1 2 2 2 2 2 2 2 2 3430600 5541300 1240.2 6578100 7983900 9589700 5228700 4746600 5317300 4194300 5023900 3194100 5174500 338340 6682500 7585400 9474700 5450500 5053900 5395200 4119100 4855400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 429310000 429310000 0 7548 1183 7036 40341;40342 48451;48452;48453 48451 3 GTRDDEYDYLFK Acetyl (Protein N-term) 1562.6889 0.68890278 1836 Q15907;P62491;P62491-2;Q15907-2 RAB11B;RAB11A Ras-related protein Rab-11B;Ras-related protein Rab-11A yes no 1 0 0 1 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 64.35 64.096 2 7.6187E-12 21795 20211116_3439_TMUAki_TMT10x_S_F1 60.398 36.243 46933000 80451000 97098 82652000 55336000 62879000 49733000 52709000 51259000 50710000 60188000 43698000 75077000 3878200 83868000 52909000 65048000 50786000 54045000 52397000 49609000 57785000 9 9 4 9 9 9 9 9 9 9 9 19454000 31907000 7613.6 33229000 22843000 35628000 23992000 21266000 20718000 20595000 23910000 18112000 29778000 1535200 33842000 21924000 35824000 24174000 22327000 21334000 20142000 22966000 4 4 1 4 4 4 4 4 4 4 4 27479000 48544000 89485 49423000 32493000 27251000 25741000 31443000 30540000 30115000 36278000 25586000 45300000 2343000 50026000 30986000 29224000 26612000 31718000 31063000 29466000 34819000 5 5 3 5 5 5 5 5 5 5 5 9353700000 5336400000 4017300000 7549 1836 7037 40343;40344;40345;40346;40347;40348 48454;48455;48456;48457;48458;48459;48460;48461;48462 48459 9 GTRPFVISR Unmodified 1031.5876 0.58761301 604 P10253 GAA Lysosomal alpha-glucosidase;76 kDa lysosomal alpha-glucosidase;70 kDa lysosomal alpha-glucosidase yes yes 0 0 0 1 By MS/MS 3 0 1 1 31.673 31.428 3 0.02727 9995 20211116_3441_TMUAki_TMT10x_S_F3 55.467 20.746 584340 1117700 0 1180100 792400 793520 706980 1012300 863930 792580 933910 544070 1043200 50747 1193700 757600 837140 726440 1011600 874520 783120 898750 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 584340 1117700 0 1180100 792400 793520 706980 1012300 863930 792580 933910 544070 1043200 50747 1193700 757600 837140 726440 1011600 874520 783120 898750 1 1 0 1 1 1 1 1 1 1 1 53334000000 0 53334000000 7550 604 7038 40349 48463 48463 1 GTSISTKPPLTK Unmodified 1228.7027 0.70270235 928 P35249;P35249-2 RFC4 Replication factor C subunit 4 yes no 0 0 0 1 By MS/MS 2 0 1 1 38.882 38.967 3 0.00072159 9729 20211116_3440_TMUAki_TMT10x_S_F2 78.615 64.357 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7551 928 7039 40350 48464 48464 1 GTSVVLICPQDGMEAIPNPFIQQQDA Oxidation (M) 2843.347 0.3469799 3149 Q9UK45 LSM7 U6 snRNA-associated Sm-like protein LSm7 yes yes 0 0 1 0 By MS/MS 6 0 1 1 80.196 80.184 3 0.021688 25815 20211116_3434_TMUAki_TMT10x_P_F6 40.404 36.6 894130 1417700 27263 1266300 773860 1282100 928040 591180 690720 740660 884070 832730 1322300 97853 1302800 747540 1289600 925940 640410 719940 717210 846840 1 1 1 1 1 1 1 1 1 1 1 894130 1417700 27263 1266300 773860 1282100 928040 591180 690720 740660 884070 832730 1322300 97853 1302800 747540 1289600 925940 640410 719940 717210 846840 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 522910000 522910000 0 7552 3149 7040 40351 48465 48465 3163 1 GTSVVLICPQDGMEAIPNPFIQQQDA Unmodified 2827.3521 0.35206528 3149 Q9UK45 LSM7 U6 snRNA-associated Sm-like protein LSm7 yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 81.46 81.463 3 0.021775 26695 20211116_3445_TMUAki_TMT10x_S_F6 40.428 37.237 10621000 21472000 225830 12614000 21263000 23824000 18286000 21950000 21260000 19092000 19904000 9889400 20002000 1019400 13662000 20312000 23537000 18796000 22326000 21450000 18764000 19242000 4 4 2 4 4 4 4 4 4 4 4 2964000 6578400 112710 3201200 3870900 10193000 6264100 7194800 6696500 6513000 6298200 2760600 6125700 363470 3608800 3778600 9885200 6242200 7446000 6779500 6389000 6088000 1 1 1 1 1 1 1 1 1 1 1 7657400 14893000 113120 9412900 17392000 13631000 12022000 14755000 14563000 12579000 13605000 7128900 13876000 655930 10053000 16534000 13652000 12554000 14880000 14670000 12375000 13154000 3 3 1 3 3 3 3 3 3 3 3 890210000 215500000 674710000 7553 3149 7040 40352;40353;40354 48466;48467;48468;48469 48468 4 GTTGTQASFLQLFEGDDHKVEQLDK Unmodified 2763.3352 0.33515289 875 P30566;P30566-2 ADSL Adenylosuccinate lyase yes no 0 0 0 1 By MS/MS By MS/MS 5.38 1.32 1 1 2 2 2 4 4 71.158 71.181 4 7.0059E-38 23546 20211116_3442_TMUAki_TMT10x_S_F4 184.45 167.51 79163000 129830000 474480 121600000 87331000 106060000 85851000 67817000 66013000 69591000 88812000 73706000 121110000 6423000 124400000 83683000 108140000 86545000 70934000 68834000 67893000 84968000 14 14 8 14 14 14 14 14 14 14 14 35156000 55478000 120990 50044000 33385000 61434000 37344000 29166000 27431000 29677000 37458000 32730000 51747000 2436800 51607000 32081000 61157000 37366000 31297000 28696000 28963000 35824000 6 6 2 6 6 6 6 6 6 6 6 44007000 74352000 353490 71559000 53945000 44624000 48507000 38651000 38582000 39914000 51353000 40976000 69367000 3986200 72796000 51602000 46987000 49179000 39637000 40138000 38930000 49143000 8 8 6 8 8 8 8 8 8 8 8 17662000000 8230700000 9431500000 7554 875 7041 40355;40356;40357;40358;40359;40360;40361;40362 48470;48471;48472;48473;48474;48475;48476;48477;48478;48479;48480;48481;48482;48483 48477 14 GTTLQSLGLTGGSATIR Unmodified 1631.8842 0.88424855 2736 Q9BZE9;Q9BZE9-2;Q9BZE9-4;Q9BZE9-3 ASPSCR1 Tether containing UBX domain for GLUT4 yes no 0 0 0 0 By MS/MS 2 0 1 1 57.184 56.931 3 0.028051 18451 20211116_3429_TMUAki_TMT10x_P_F2 40.616 24.362 5086300 8772900 38991 9730400 8883700 9845300 6096500 5119200 5118200 5470600 6382800 4736100 8189600 511210 9860700 8450400 9916500 6299400 5453900 5294600 5328400 6118100 1 1 1 1 1 1 1 1 1 1 1 5086300 8772900 38991 9730400 8883700 9845300 6096500 5119200 5118200 5470600 6382800 4736100 8189600 511210 9860700 8450400 9916500 6299400 5453900 5294600 5328400 6118100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 323240000 323240000 0 7555 2736 7042 40363 48484 48484 1 GTTPLAPPPKPVR Unmodified 1329.7769 0.77687035 2433 Q96D71;Q96D71-2;Q96D71-4;Q96D71-3 REPS1 RalBP1-associated Eps domain-containing protein 1 yes no 0 0 0 1 By MS/MS 2 0 1 1 36.939 36.708 3 0.0011183 10164 20211116_3429_TMUAki_TMT10x_P_F2 76.326 58.852 1111100 1720200 28232 1892300 3456400 2261200 1204900 1139100 1366000 938910 1523100 1034700 1605800 151270 1923900 3259300 2255600 1344900 1208800 1388200 925240 1464400 1 1 1 1 1 1 1 1 1 1 1 1111100 1720200 28232 1892300 3456400 2261200 1204900 1139100 1366000 938910 1523100 1034700 1605800 151270 1923900 3259300 2255600 1344900 1208800 1388200 925240 1464400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 68663000 68663000 0 7556 2433 7043 40364 48485 48485 1 GTVAYVGATLFATGK Unmodified 1454.7769 0.77692993 1694 Q14203;Q14203-6;Q14203-3;Q14203-4 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 By MS/MS 4 0 2 2 72.33 72.385 3 3.6402E-10 23546 20211116_3431_TMUAki_TMT10x_P_F4 118.51 96.309 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7557 1694 7044 40365;40366 48486;48487 48486 2 GTVGEPTYDAEFQHFLR Unmodified 1965.9221 0.92209062 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS 3 1 1 1 2 59.987 59.917 2;3 1.8135E-06 19577 20211116_3429_TMUAki_TMT10x_P_F2 99.732 85.045 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7558 1695 7045 40367;40368 48488;48489 48488 2 GTVGFSGAELENLVNQAALK Unmodified 2017.048 0.04801941 2567 Q96TA2;Q96TA2-3;Q96TA2-2 YME1L1 ATP-dependent zinc metalloprotease YME1L1 yes no 0 0 0 0 By MS/MS 6 0 1 1 79.058 79.042 3 0.0026443 25341 20211116_3434_TMUAki_TMT10x_P_F6 60.334 32.999 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7559 2567 7046 40369 48490 48490 1 GTVGSILDR Unmodified 916.49779 0.49779495 1303 P61221 ABCE1 ATP-binding cassette sub-family E member 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 42.057 42.131 2 0.013203 11216 20211116_3431_TMUAki_TMT10x_P_F4 64.42 32.486 2143000 3404400 15103 3910200 6190900 5375300 3031900 3015800 3233700 2437300 3154500 1995500 3178600 248440 3975200 5857600 5332600 3246800 3168000 3278100 2404300 3045500 1 1 1 1 1 1 1 1 1 1 1 2143000 3404400 15103 3910200 6190900 5375300 3031900 3015800 3233700 2437300 3154500 1995500 3178600 248440 3975200 5857600 5332600 3246800 3168000 3278100 2404300 3045500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 89668000 89668000 0 7560 1303 7047 40370;40371;40372 48491;48492;48493 48491 3 GTVIIIANHGDR Unmodified 1264.6888 0.68878362 1868 Q16851;Q16851-2 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 34.861 34.962 3 0.068148 8755 20211116_3433_TMUAki_TMT10x_P_F5 35.037 25.715 1248700 1981600 0 1859300 2598600 2951100 1505500 1640300 1768500 1368100 1769200 1162400 1848600 94575 1921700 2462400 2909600 1592400 1725800 1787600 1347300 1706600 2 2 0 2 2 2 2 2 2 2 2 1128100 1759500 0 1643300 2458500 2836900 1353900 1518500 1638000 1247800 1620900 1050200 1641400 86307 1702500 2327900 2786800 1439900 1602300 1653300 1229800 1564200 1 1 0 1 1 1 1 1 1 1 1 120570 222100 0 215970 140090 114190 151630 121830 130500 120250 148250 112240 207220 8268 219230 134490 122780 152550 123430 134310 117500 142460 1 1 0 1 1 1 1 1 1 1 1 75916000 52291000 23626000 7561 1868 7048 40373;40374;40375 48494;48495 48494 2 GTVLLADNVICPGAPDFLAHVR Unmodified 2334.2154 0.21543586 761 P21964;P21964-2 COMT Catechol O-methyltransferase yes no 0 0 0 0 By MS/MS 8 0 1 1 76.471 76.48 3 2.2551E-10 24950 20211116_3436_TMUAki_TMT10x_P_F8 103.31 86.912 6253900 8477300 130680 8617600 4735700 10620000 7215200 6708700 5338100 7019300 7074600 5824000 7910700 324460 8811400 4611100 10607000 7130900 7027600 5574400 6842600 6770800 2 2 1 2 2 2 2 2 2 2 2 6253900 8477300 130680 8617600 4735700 10620000 7215200 6708700 5338100 7019300 7074600 5824000 7910700 324460 8811400 4611100 10607000 7130900 7027600 5574400 6842600 6770800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1839500000 1839500000 0 7562 761 7049 40376 48496;48497 48496 2 GTVRPANDFNPDADAK Unmodified 1686.7962 0.79616182 548 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 35.893 35.787 3 5.8737E-08 8700 20211116_3431_TMUAki_TMT10x_P_F4 118.48 99.405 844800 1166600 7294.9 1957700 3862100 2037100 1070200 1199600 1704700 807410 1500300 786640 1091500 118470 1942500 3633400 2051500 1251100 1250200 1699200 804720 1453600 2 2 1 2 2 2 2 2 2 2 2 628780 831320 7294.9 1508500 3641900 1823200 850960 896630 1314600 573710 1101800 585510 778240 101130 1495800 3422300 1817100 1023500 948730 1309500 573620 1069400 1 1 1 1 1 1 1 1 1 1 1 216020 335240 0 449200 220140 213840 219200 303020 390140 233700 398580 201130 313240 17337 446690 211010 234370 227690 301510 389720 231100 384240 1 1 0 1 1 1 1 1 1 1 1 145160000 128020000 17141000 7563 548 7050 40377;40378 48498;48499 48498 2 GTVSFGDFVQVAR Unmodified 1381.699 0.69901396 2037 Q6ZWJ1;Q6ZWJ1-2 STXBP4 Syntaxin-binding protein 4 yes no 0 0 0 0 By MS/MS 8 0 1 1 65.147 65.093 2 0.0080228 19701 20211116_3447_TMUAki_TMT10x_S_F8 62.528 43.797 2851600 5180500 58593 4237100 3551200 3293800 3155300 3498700 3537900 3548200 3868900 2655600 4830400 300820 4375100 3398600 3418300 3233100 3548400 3594200 3463300 3722000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2851600 5180500 58593 4237100 3551200 3293800 3155300 3498700 3537900 3548200 3868900 2655600 4830400 300820 4375100 3398600 3418300 3233100 3548400 3594200 3463300 3722000 1 1 1 1 1 1 1 1 1 1 1 365170000 0 365170000 7564 2037 7051 40379 48500 48500 1 GTVTDFPGFDER Unmodified 1339.6044 0.60444487 564 P08758 ANXA5 Annexin A5 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 55.956 55.799 2 3.3435E-19 19442 20211116_3441_TMUAki_TMT10x_S_F3 220.82 188.88 31457000 52364000 32833 57438000 44504000 56907000 36817000 41696000 45309000 42821000 45877000 29288000 48880000 2590900 58229000 42466000 57664000 38010000 43195000 45743000 41775000 44238000 9 9 2 9 9 9 9 9 9 9 9 18209000 29125000 0 31938000 33052000 44473000 25666000 23396000 25771000 24091000 25876000 16953000 27187000 1534500 32571000 31494000 44059000 26424000 24872000 26217000 23500000 24958000 5 5 0 5 5 5 5 5 5 5 5 13248000 23239000 32833 25499000 11452000 12434000 11151000 18300000 19538000 18730000 20002000 12335000 21693000 1056400 25659000 10972000 13605000 11586000 18323000 19526000 18275000 19280000 4 4 2 4 4 4 4 4 4 4 4 3577900000 1974800000 1603100000 7565 564 7052 40380;40381;40382;40383;40384;40385 48501;48502;48503;48504;48505;48506;48507;48508;48509 48507 9 GTVTDFPGFDERADAETLRK Unmodified 2224.076 0.076025075 564 P08758 ANXA5 Annexin A5 yes yes 0 0 0 2 By MS/MS By MS/MS 4.83 1.07 1 1 2 2 4 2 53.222 53.324 4 3.1421E-51 14859 20211116_3444_TMUAki_TMT10x_S_F5 230.99 210.6 33813000 57852000 336690 55261000 48524000 54438000 36219000 53037000 52425000 48073000 51233000 31483000 53973000 3020000 56546000 46218000 55477000 37884000 53846000 52582000 47156000 49460000 5 5 3 5 5 5 5 5 5 5 5 15817000 25877000 0 23055000 25811000 37332000 20584000 24164000 25206000 22906000 23838000 14725000 24135000 1148200 23932000 24598000 36855000 21296000 25196000 25392000 22423000 23038000 2 2 0 2 2 2 2 2 2 2 2 17996000 31975000 336690 32206000 22712000 17106000 15635000 28872000 27219000 25168000 27396000 16759000 29837000 1871800 32614000 21620000 18622000 16588000 28651000 27190000 24733000 26422000 3 3 3 3 3 3 3 3 3 3 3 4859400000 3362700000 1496700000 7566 564 7053 40386;40387;40388;40389;40390;40391 48510;48511;48512;48513;48514 48513 5 GTVVTGTLER Unmodified 1031.5611 0.56112349 1097 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3.62 1.11 2 1 3 2 2 6 32.505 32.518 2 3.1354E-08 8836 20211116_3433_TMUAki_TMT10x_P_F5 163.64 112.29 10803000 15632000 7771.8 15937000 11788000 8939200 8092600 6507100 7276900 6524200 10490000 10058000 14588000 790770 16132000 11203000 9483600 8376700 6739200 7552700 6371200 10020000 7 7 2 7 7 7 7 7 7 7 7 8445400 11870000 0 11949000 9239900 6941500 5423800 4642500 5188400 4788300 7651900 7862800 11077000 612070 12109000 8757300 7328700 5693900 4840600 5376000 4670500 7305200 2 2 0 2 2 2 2 2 2 2 2 2357600 3762000 7771.8 3987900 2548500 1997700 2668800 1864600 2088500 1736000 2838400 2195000 3511200 178700 4022600 2445500 2154900 2682900 1898700 2176700 1700700 2714900 5 5 2 5 5 5 5 5 5 5 5 814190000 619100000 195090000 7567 1097 7054 40392;40393;40394;40395;40396;40397;40398;40399 48515;48516;48517;48518;48519;48520;48521;48522 48516 8 GTYLATFHQR Unmodified 1192.5989 0.59890598 1249 P55884;P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 35.163 35.146 3 1.0112E-08 8037 20211116_3428_TMUAki_TMT10x_P_F1 165.98 127.56 892490 1377900 32344 1602600 1617000 1231600 953560 1057500 1163300 913170 1204200 831240 1286600 114280 1613500 1535700 1273700 1008400 1079700 1175700 897800 1160300 2 2 2 2 2 2 2 2 2 2 2 410310 603300 17716 719610 1114100 837180 507970 532400 593700 424130 494940 382170 563380 60385 727660 1054100 838760 549600 553450 596730 418690 480510 1 1 1 1 1 1 1 1 1 1 1 482180 774590 14628 883020 502920 394470 445590 525100 569610 489040 709220 449070 723180 53900 885860 481660 434930 458820 526210 579010 479110 679840 1 1 1 1 1 1 1 1 1 1 1 167710000 118750000 48955000 7568 1249 7055 40400;40401 48523;48524 48523 2 GTYLTHEAK Unmodified 1018.5084 0.50835964 2179 Q8N126;Q8N126-3;Q8N126-2 CADM3 Cell adhesion molecule 3 yes no 0 0 0 0 By MS/MS By MS/MS 3.4 1.5 2 1 1 3 3 6 4 28.729 28.697 2;3 0.00079902 6332 20211116_3431_TMUAki_TMT10x_P_F4 88.948 47.919 10899000 17368000 261980 14149000 9245200 15695000 11891000 8400900 8815400 8888700 12131000 10150000 16194000 1072300 14685000 8943700 15730000 11828000 8924100 9220400 8661100 11600000 9 9 2 9 9 9 9 9 9 9 9 6898700 10608000 1404.2 7777400 4925700 10586000 6062500 4088600 4411900 4826400 6576300 6423000 9887900 498050 8176200 4748500 10465000 6038900 4507100 4637400 4683300 6276900 6 6 1 6 6 6 6 6 6 6 6 4000800 6759800 260580 6371800 4319500 5108900 5828300 4312200 4403500 4062400 5555200 3727100 6306100 574250 6508800 4195200 5264600 5788900 4417100 4583000 3977800 5323200 3 3 1 3 3 3 3 3 3 3 3 1341000000 914200000 426810000 7569 2179 7056 40402;40403;40404;40405;40406;40407;40408;40409;40410;40411 48525;48526;48527;48528;48529;48530;48531;48532;48533 48527 9 GVAALCIGGGMGIAMCVQRE 2 Oxidation (M) 2080.9526 0.95262094 2706 Q9BWD1;Q9BWD1-2 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes no 0 0 2 1 By MS/MS 7 0 1 1 56.551 57.284 3 0.00090378 18256 20211116_3435_TMUAki_TMT10x_P_F7 61.477 55.355 1843000 3285700 70685 2914100 2286500 4043400 2553200 2815700 2429100 2683200 2634700 1716600 3064600 224890 3016000 2203400 4021900 2572000 2920800 2483900 2626000 2535200 1 1 1 1 1 1 1 1 1 1 1 1843000 3285700 70685 2914100 2286500 4043400 2553200 2815700 2429100 2683200 2634700 1716600 3064600 224890 3016000 2203400 4021900 2572000 2920800 2483900 2626000 2535200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 504220000 504220000 0 7570 2706 7057 40412 48534 48534 2902;2903 1 GVAALTSDPAVQAIVLDTASDVLDK Unmodified 2468.301 0.30099921 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.78 1.84 2 3 4 3 2 2 2 9 9 82.067 82.063 3;4 5.1931E-74 26549 20211116_3434_TMUAki_TMT10x_P_F6 256.06 241.59 25283000 42433000 143470 40333000 27922000 31521000 31989000 18198000 17973000 21038000 29548000 23541000 39587000 1696000 41163000 26874000 32356000 31801000 19260000 19309000 20430000 28146000 18 18 9 18 18 18 18 18 18 18 18 10104000 16907000 43011 15968000 9292100 15956000 10598000 7497000 7304000 8317600 12188000 9408000 15772000 642160 16356000 8943500 16066000 10580000 8074000 7748000 8089600 11606000 7 7 3 7 7 7 7 7 7 7 7 15179000 25527000 100460 24365000 18629000 15565000 21391000 10701000 10669000 12720000 17360000 14133000 23815000 1053800 24807000 17931000 16290000 21221000 11186000 11561000 12340000 16540000 11 11 6 11 11 11 11 11 11 11 11 6265300000 3597100000 2668200000 7571 3293 7058 40413;40414;40415;40416;40417;40418;40419;40420;40421;40422;40423;40424;40425;40426;40427;40428;40429;40430 48535;48536;48537;48538;48539;48540;48541;48542;48543;48544;48545;48546;48547;48548;48549;48550;48551;48552 48539 18 GVAFVGGFSYADVLGSAK Unmodified 1743.8832 0.88318591 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 0 By MS/MS 2 0 1 1 97.168 97.136 3 0.10182 34527 20211116_3429_TMUAki_TMT10x_P_F2 22.985 8.6317 52260 84522 3330.7 74829 41795 88974 61212 56213 54597 49360 62756 48684 78832 7290.2 77234 40765 89032 60870 58601 56122 48490 60286 1 1 1 1 1 1 1 1 1 1 1 52260 84522 3330.7 74829 41795 88974 61212 56213 54597 49360 62756 48684 78832 7290.2 77234 40765 89032 60870 58601 56122 48490 60286 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 817370 817370 0 7572 157 7059 40431 48553 48553 1 GVAGALRPLVQATVPATPEQPVLDLK Unmodified 2639.501 0.50103642 1067 P47985;P0C7P4 UQCRFS1;UQCRFS1P1 Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11;Putative cytochrome b-c1 complex subunit Rieske-like protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 76.192 76.116 4 5.7167E-18 26177 20211116_3429_TMUAki_TMT10x_P_F2 138.49 101.11 13132000 22095000 54982 20790000 14492000 15629000 15917000 10631000 10359000 10879000 15572000 12227000 20612000 1089100 21224000 13930000 16128000 15899000 11068000 10966000 10615000 14860000 3 3 1 3 3 3 3 3 3 3 3 4195400 7219300 54982 6581300 3372700 5945200 4557400 3181300 2973000 3248700 4666200 3906800 6734000 387550 6749500 3267000 6033700 4511800 3376000 3153900 3170100 4448900 1 1 1 1 1 1 1 1 1 1 1 8936500 14876000 0 14209000 11119000 9684000 11360000 7449500 7385700 7630800 10906000 8320200 13878000 701590 14475000 10663000 10094000 11387000 7692300 7812500 7445100 10411000 2 2 0 2 2 2 2 2 2 2 2 3165900000 1645200000 1520700000 7573 1067 7060 40432;40433 48554;48555;48556 48554 3 GVAGVPAEFSIWTR Unmodified 1488.7725 0.77251325 1703 Q14315;Q14315-2 FLNC Filamin-C yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 73.848 73.88 2 3.762E-33 23893 20211116_3436_TMUAki_TMT10x_P_F8 231.07 191.77 2865700 4057600 0 4507500 3262500 5019100 4363000 1990100 1582700 2268900 3321500 2668200 3787900 236790 4574300 3155500 5013500 4282000 2184600 1793500 2204400 3150300 1 1 0 1 1 1 1 1 1 1 1 2865700 4057600 0 4507500 3262500 5019100 4363000 1990100 1582700 2268900 3321500 2668200 3787900 236790 4574300 3155500 5013500 4282000 2184600 1793500 2204400 3150300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 688730000 688730000 0 7574 1703 7061 40434;40435 48557;48558 48557 2 GVAIGQTSLTASVTNK Unmodified 1545.8362 0.83623572 2286 Q8TEM1 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 53.635 53.49 3 3.2208E-15 17532 20211116_3439_TMUAki_TMT10x_S_F1 148.7 106.1 6599500 11268000 160280 10399000 10200000 12466000 8584200 11570000 11279000 10554000 10687000 6146000 10511000 746950 10701000 9749300 12552000 8875200 11779000 11336000 10349000 10328000 3 3 3 3 3 3 3 3 3 3 3 3336700 5405500 124400 4501500 6543700 8930900 5436600 6393900 6335600 5682300 5625200 3107700 5040500 437490 4722400 6254100 8768000 5600300 6607600 6380900 5578900 5448500 1 1 1 1 1 1 1 1 1 1 1 3262800 5862200 35878 5897800 3656300 3534800 3147600 5176300 4943500 4871600 5062100 3038200 5470200 309460 5978800 3495200 3783600 3274900 5170900 4954800 4770500 4879600 2 2 2 2 2 2 2 2 2 2 2 568310000 413630000 154680000 7575 2286 7062 40436;40437;40438 48559;48560;48561;48562 48561 4 GVAINFVK Unmodified 846.49634 0.49633839 973 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 55.18 55.03 2 0.00044671 16073 20211116_3428_TMUAki_TMT10x_P_F1 151.51 104.44 22370000 33346000 0 38050000 33816000 34196000 25059000 23339000 24160000 23651000 28365000 20827000 31133000 1847900 38428000 32194000 34830000 25848000 24287000 24767000 23085000 27233000 3 3 0 3 3 3 3 3 3 3 3 16961000 24151000 0 28210000 27983000 29216000 19200000 16661000 17533000 17345000 20767000 15791000 22550000 1398400 28507000 26600000 29419000 19883000 17594000 18024000 16912000 19933000 2 2 0 2 2 2 2 2 2 2 2 5408500 9195400 0 9840800 5832800 4979800 5858500 6677400 6627300 6305500 7598300 5035800 8582700 449520 9920900 5593100 5411100 5965000 6692300 6742900 6173600 7299700 1 1 0 1 1 1 1 1 1 1 1 784290000 612870000 171420000 7576 973 7063 40439;40440;40441 48563;48564;48565;48566 48564 4 GVAINFVTEEDKR Unmodified 1476.7573 0.75725712 1697 Q14240;Q14240-2 EIF4A2 Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 49.692 49.858 3 1.7521E-14 14568 20211116_3433_TMUAki_TMT10x_P_F5 162.41 127.18 27402000 43290000 363010 51064000 43589000 42548000 30221000 29743000 31907000 27700000 36564000 25517000 40423000 2817500 51417000 41480000 43583000 31406000 30825000 32551000 27137000 35128000 5 5 4 5 5 5 5 5 5 5 5 17316000 27252000 305470 31934000 33909000 34539000 21194000 18656000 19777000 17568000 22386000 16125000 25446000 1952700 32286000 32212000 34669000 22119000 19737000 20275000 17202000 21514000 3 3 3 3 3 3 3 3 3 3 3 10086000 16038000 57534 19130000 9680100 8009000 9027300 11087000 12130000 10132000 14178000 9391400 14977000 864770 19131000 9267600 8914200 9287000 11089000 12277000 9935000 13614000 2 2 1 2 2 2 2 2 2 2 2 2460600000 1434600000 1026000000 7577 1697 7064 40442;40443;40444;40445 48567;48568;48569;48570;48571 48568 5 GVAINMVTEEDKR Unmodified 1460.7293 0.72932781 1277 P60842 EIF4A1 Eukaryotic initiation factor 4A-I yes yes 0 0 0 1 By MS/MS By MS/MS 4.2 1.17 1 2 2 4 1 6 4 43.868 43.923 3 1.8263E-25 12232 20211116_3442_TMUAki_TMT10x_S_F4 226.59 202.34 52836000 74567000 754040 110940000 68589000 45649000 45636000 24442000 22321000 25761000 55460000 49200000 69715000 5128800 109630000 65224000 50055000 46769000 25961000 24904000 25105000 52474000 12 12 8 12 12 12 12 12 12 12 12 21188000 28725000 69347 41494000 45689000 30070000 23390000 11505000 11296000 11418000 22640000 19728000 26852000 2036700 41258000 43244000 30921000 24517000 12632000 12423000 11155000 21489000 6 6 3 6 6 6 6 6 6 6 6 31648000 45842000 684690 69445000 22900000 15579000 22246000 12937000 11025000 14343000 32820000 29472000 42864000 3092100 68372000 21980000 19134000 22252000 13329000 12480000 13950000 30985000 6 6 5 6 6 6 6 6 6 6 6 7006600000 4575700000 2430800000 7578 1277 7065 40446;40447;40448;40449;40450;40451;40452;40453;40454;40455 48572;48573;48574;48575;48576;48577;48578;48579;48580;48581;48582;48583;48584;48585;48586 48581 15 GVAINMVTEEDKR Oxidation (M) 1476.7242 0.72424243 1277 P60842 EIF4A1 Eukaryotic initiation factor 4A-I yes yes 0 0 1 1 By MS/MS By MS/MS 4.62 0.992 1 3 2 2 5 3 36.124 36.171 3 3.1996E-06 10325 20211116_3430_TMUAki_TMT10x_P_F3 106.26 87.126 4529300 6767900 39594 8596100 8906600 6474700 4830300 3687500 4120000 3486100 5451400 4217500 6322000 469220 8608600 8439700 6664300 5090800 3883800 4269700 3413000 5217600 9 9 7 9 9 9 9 9 9 9 9 3216600 4801800 34386 6119400 7734500 5520100 3698600 2531500 2826100 2425100 3858200 2995300 4485500 361400 6140700 7316800 5593300 3935700 2721500 2949900 2372900 3689900 6 6 5 6 6 6 6 6 6 6 6 1312600 1966100 5208.7 2476800 1172100 954650 1131700 1156000 1294000 1061000 1593200 1222200 1836500 107830 2467900 1122900 1070900 1155100 1162300 1319900 1040100 1527700 3 3 2 3 3 3 3 3 3 3 3 1372900000 1260200000 112680000 7579 1277 7065 40456;40457;40458;40459;40460;40461;40462;40463 48587;48588;48589;48590;48591;48592;48593;48594;48595;48596;48597 48588 1730 11 GVAMNPVEHPFGGGNHQHIGKPSTIR Oxidation (M) 2752.3616 0.3615996 1384 P62917 RPL8 60S ribosomal protein L8 yes yes 0 0 1 1 By MS/MS 1.5 0.5 1 1 2 37.464 37.345 6 0.0037907 10484 20211116_3429_TMUAki_TMT10x_P_F2 50.827 44.323 3313400 4780000 34655 6870800 8502200 7337300 4245700 3406200 3438100 3099000 4093300 3085300 4468100 368640 6868600 8046700 7357600 4504100 3652400 3556300 3039300 3928400 3 3 2 3 3 3 3 3 3 3 3 3313400 4780000 34655 6870800 8502200 7337300 4245700 3406200 3438100 3099000 4093300 3085300 4468100 368640 6868600 8046700 7357600 4504100 3652400 3556300 3039300 3928400 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 276220000 276220000 0 7580 1384 7066 40464;40465 48598;48599 48599 1857 2 GVAVKVEEPR Unmodified 1082.6084 0.60840804 2625 Q9BQ69 MACROD1 O-acetyl-ADP-ribose deacetylase MACROD1 yes yes 0 0 0 1 By MS/MS By MS/MS 3.8 1.17 1 1 1 2 3 2 31.719 31.637 3 0.0013148 8103 20211116_3433_TMUAki_TMT10x_P_F5 81.625 69.269 5678700 8635100 43513 8112400 8241000 9708700 6873100 7144000 7064400 5850600 7525900 5287500 8055500 523120 8336800 7868500 9734400 7049100 7354200 7194800 5767300 7245700 5 5 3 5 5 5 5 5 5 5 5 4272500 6396600 42494 6002600 6462400 8211000 5279100 5486100 5425200 4404700 5558400 3978300 5967200 401070 6184500 6167800 8167300 5421200 5683100 5517500 4346400 5357800 3 3 2 3 3 3 3 3 3 3 3 1406200 2238600 1019.1 2109800 1778600 1497700 1594000 1657900 1639200 1445900 1967500 1309300 2088300 122050 2152300 1700800 1567100 1627900 1671200 1677300 1420800 1887800 2 2 1 2 2 2 2 2 2 2 2 311940000 240920000 71021000 7581 2625 7067 40466;40467;40468;40469;40470 48600;48601;48602;48603;48604 48601 5 GVAYTLLTPK Unmodified 1061.6121 0.61209643 2125 Q86XP3;Q86XP3-2 DDX42 ATP-dependent RNA helicase DDX42 yes no 0 0 0 0 By MS/MS By MS/MS 1.75 0.433 1 3 3 1 59.744 59.497 2;3 5.472E-11 19463 20211116_3429_TMUAki_TMT10x_P_F2 208.37 172.17 7112700 12957000 17245 12835000 10886000 12604000 8210100 9963600 9472800 8569200 9908200 6622500 12090000 632940 13099000 10371000 12795000 8506900 10222000 9597100 8426500 9544600 2 2 1 2 2 2 2 2 2 2 2 3894500 6989200 0 7017500 7071700 9507900 5267900 5240600 5190900 4638800 5298600 3626000 6521700 341710 7194300 6733700 9436500 5435400 5525700 5288100 4555300 5108000 1 1 0 1 1 1 1 1 1 1 1 3218200 5967600 17245 5817600 3814800 3095700 2942200 4722900 4281800 3930400 4609600 2996600 5567900 291240 5904800 3636900 3358200 3071500 4696100 4309000 3871300 4436600 1 1 1 1 1 1 1 1 1 1 1 859210000 616410000 242800000 7582 2125 7068 40471;40472;40473;40474 48605;48606;48607;48608 48606 4 GVCHIPMAEPFCPK Oxidation (M) 1657.7415 0.74148917 1596 Q13126;Q13126-7;Q13126-4;Q13126-6;Q13126-5;Q13126-3;Q13126-2 MTAP S-methyl-5'-thioadenosine phosphorylase yes no 0 0 1 0 By MS/MS 6 0 1 1 44.926 45 3 0.018305 11424 20211116_3434_TMUAki_TMT10x_P_F6 51.211 37.548 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7583 1596 7069 40475 48609 48609 2151 1 GVCLIDEFDK Unmodified 1194.5591 0.55907458 1114 P49736 MCM2 DNA replication licensing factor MCM2 yes yes 0 0 0 0 By MS/MS By MS/MS 3.4 1.02 1 2 1 1 3 2 66.699 66.479 2 1.2728E-08 21094 20211116_3431_TMUAki_TMT10x_P_F4 174.02 141.8 35780000 57110000 68191 64742000 36665000 43026000 35707000 24947000 25372000 27819000 39198000 33313000 53318000 2761600 65183000 35118000 44765000 35949000 26363000 26754000 27051000 37385000 5 5 1 5 5 5 5 5 5 5 5 24839000 38694000 68191 45310000 25596000 34648000 24197000 15949000 16606000 18732000 26356000 23126000 36131000 1892600 45597000 24496000 35535000 24382000 17243000 17572000 18180000 25123000 3 3 1 3 3 3 3 3 3 3 3 10941000 18415000 0 19432000 11069000 8377900 11510000 8998100 8765600 9087200 12842000 10187000 17187000 869050 19586000 10622000 9230600 11567000 9120000 9182200 8871400 12262000 2 2 0 2 2 2 2 2 2 2 2 1749400000 1102200000 647200000 7584 1114 7070 40476;40477;40478;40479;40480 48610;48611;48612;48613;48614;48615 48611 6 GVCTEAGMYALR Oxidation (M) 1342.601 0.60095617 1337 P62195;P62195-2 PSMC5 26S protease regulatory subunit 8 yes no 0 0 1 0 By MS/MS By MS/MS 4 0.577 1 4 1 4 2 39.486 39.582 2;3 2.0277E-08 10810 20211116_3442_TMUAki_TMT10x_S_F4 142.56 113.13 1936000 3025400 0 3612000 4360800 4408900 2125600 3071400 3511300 2425300 2773100 1801900 2825200 108690 3655300 4119600 4412200 2315900 3170900 3485300 2395300 2698000 3 3 0 3 3 3 3 3 3 3 3 1401400 2166600 0 2597700 3918600 3959000 1749500 2177800 2529600 1735800 1924800 1304200 2023300 72672 2640000 3697700 3909200 1912200 2290900 2517900 1713500 1875500 2 2 0 2 2 2 2 2 2 2 2 534590 858750 0 1014300 442170 449860 376080 893600 981690 689530 848280 497700 801880 36019 1015300 421850 503070 403680 880050 967460 681830 822430 1 1 0 1 1 1 1 1 1 1 1 425080000 232160000 192910000 7585 1337 7071 40481;40482;40483;40484;40485;40486 48616;48617;48618;48619;48620;48621 48620 1793 6 GVDDLDFFIGDEAIEKPTYATK Unmodified 2443.1795 0.17948709 1296 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 0 1 By MS/MS By MS/MS 4.33 1.25 1 1 1 1 2 77.914 77.839 3;4 3.5565E-10 27382 20211116_3430_TMUAki_TMT10x_P_F3 104.63 96.241 4062900 6469700 61615 5383400 3743000 7185400 4595500 3733100 3789100 4124000 5012300 3783400 6032800 389790 5595600 3614100 7131300 4591900 3981500 3933500 4011600 4797300 1 1 1 1 1 1 1 1 1 1 1 4062900 6469700 61615 5383400 3743000 7185400 4595500 3733100 3789100 4124000 5012300 3783400 6032800 389790 5595600 3614100 7131300 4591900 3981500 3933500 4011600 4797300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1377200000 598500000 778670000 7586 1296 7072 40487;40488;40489 48622;48623 48622 2 GVDGSFLARPSK Unmodified 1232.6513 0.65133548 1523 Q06124;Q06124-3;Q06124-1 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 41.783 42.023 3 0.023989 10283 20211116_3447_TMUAki_TMT10x_S_F8 53.754 31.556 2154200 3563300 19931 3845200 3983500 3609400 2450300 3548700 3697200 2800400 3487000 2005900 3326000 221840 3899300 3782200 3690200 2604200 3588700 3699200 2765900 3370300 2 2 1 2 2 2 2 2 2 2 2 841930 1415100 0 1533500 2655200 2533000 1252600 1607300 1681200 1180300 1457000 783920 1320900 94246 1571100 2510600 2498000 1357100 1668200 1683600 1170400 1412400 1 1 0 1 1 1 1 1 1 1 1 1312300 2148200 19931 2311700 1328400 1076400 1197700 1941400 2016000 1620100 2030000 1222000 2005100 127600 2328300 1271600 1192200 1247100 1920600 2015600 1595500 1957800 1 1 1 1 1 1 1 1 1 1 1 148700000 105780000 42922000 7587 1523 7073 40490;40491;40492 48624;48625 48625 2 GVDIVMDPLGGSDTAK Oxidation (M) 1589.7607 0.76068752 2580 Q99536;Q99536-2;Q99536-3 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes no 0 0 1 0 By MS/MS By MS/MS 4 0 2 1 1 58.784 58.915 3 1.2264E-07 18020 20211116_3431_TMUAki_TMT10x_P_F4 112.24 98.573 6329400 10731000 73276 10235000 10944000 16832000 9605900 10701000 10520000 9599400 9392900 5893700 10012000 644420 10575000 10464000 16602000 9841900 11157000 10622000 9420600 9095900 2 2 1 2 2 2 2 2 2 2 2 6329400 10731000 73276 10235000 10944000 16832000 9605900 10701000 10520000 9599400 9392900 5893700 10012000 644420 10575000 10464000 16602000 9841900 11157000 10622000 9420600 9095900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 317590000 317590000 0 7588 2580 7074 40493;40494 48626;48627;48628 48627 2816 3 GVDIVMDPLGGSDTAK Unmodified 1573.7658 0.76577289 2580 Q99536;Q99536-2;Q99536-3 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes no 0 0 0 0 By MS/MS 4 0 1 1 68.364 68.446 3 4.2826E-07 21938 20211116_3431_TMUAki_TMT10x_P_F4 103.6 83.223 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7589 2580 7074 40495 48629 48629 1 GVDLQENNPASR Unmodified 1298.6215 0.62149192 1150 P51148;P51148-2 RAB5C Ras-related protein Rab-5C yes no 0 0 0 0 By matching By MS/MS 2.5 0.5 1 1 1 1 34.182 33.951 2 0.00031568 10605 20211116_3441_TMUAki_TMT10x_S_F3 91.694 65.957 519700 853660 6426.9 900880 518640 505770 565750 491310 514540 489010 664880 483940 796740 49062 909800 498870 539290 569810 500200 531030 477690 636730 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 519700 853660 6426.9 900880 518640 505770 565750 491310 514540 489010 664880 483940 796740 49062 909800 498870 539290 569810 500200 531030 477690 636730 1 1 1 1 1 1 1 1 1 1 1 35539000 17619000 17920000 7590 1150 7075 40496;40497 48630 48630 1 GVDLVLNSLAEEK Unmodified 1385.7402 0.74021007 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 4.25 1.48 3 4 4 4 4 1 11 9 76.021 75.972 2;3 7.8328E-36 24961 20211116_3431_TMUAki_TMT10x_P_F4 264.84 203.93 116550000 190900000 1375600 194000000 122620000 146020000 119520000 99085000 91314000 103080000 129220000 108520000 178140000 10641000 196970000 117560000 150660000 120520000 103230000 95476000 100510000 123480000 24 24 17 24 24 24 24 24 24 24 24 60567000 95669000 457360 97246000 63663000 97284000 65523000 50580000 45783000 52621000 64693000 56396000 89275000 5390300 99096000 61111000 98055000 65754000 53844000 48111000 51308000 61822000 12 12 8 12 12 12 12 12 12 12 12 55980000 95230000 918220 96753000 58960000 48737000 53996000 48505000 45532000 50462000 64528000 52128000 88866000 5250200 97879000 56446000 52607000 54768000 49387000 47365000 49203000 61660000 12 12 9 12 12 12 12 12 12 12 12 13800000000 7491300000 6309200000 7591 1092 7076 40498;40499;40500;40501;40502;40503;40504;40505;40506;40507;40508;40509;40510;40511;40512;40513;40514;40515;40516;40517 48631;48632;48633;48634;48635;48636;48637;48638;48639;48640;48641;48642;48643;48644;48645;48646;48647;48648;48649;48650;48651;48652;48653;48654;48655 48636 25 GVDLYLR Unmodified 834.45995 0.45995289 223 O43592 XPOT Exportin-T yes yes 0 0 0 0 By MS/MS 5 0 1 1 48.095 48.267 2 0.034319 12826 20211116_3444_TMUAki_TMT10x_S_F5 73.039 6.004 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7592 223 7077 40518 48656 48656 1 GVDRTPYLGDVAVVVHPGKK Unmodified 2106.1586 0.15857291 2617 Q9BPU6 DPYSL5 Dihydropyrimidinase-related protein 5 yes yes 0 0 0 2 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 48.495 48.432 5 1.3019E-12 15458 20211116_3439_TMUAki_TMT10x_S_F1 125.23 106.63 8230600 13432000 85511 14829000 14846000 18123000 9782900 14559000 13016000 11343000 12009000 7663100 12539000 717750 15079000 14104000 18179000 10288000 14886000 13065000 11211000 11615000 4 4 2 4 4 4 4 4 4 4 4 6029200 10104000 30618 11161000 12318000 16068000 8093500 10676000 9679800 8397900 8523900 5612900 9432200 479510 11385000 11698000 15945000 8479600 11059000 9737100 8295700 8258500 3 3 1 3 3 3 3 3 3 3 3 2201500 3328200 54894 3667900 2527400 2054700 1689400 3883200 3336500 2944900 3484600 2050200 3106900 238240 3693700 2405600 2233800 1808500 3827800 3327500 2914800 3356900 1 1 1 1 1 1 1 1 1 1 1 3060300000 1837300000 1223100000 7593 2617 7078 40519;40520;40521;40522 48657;48658;48659;48660 48660 4 GVEAGPDLLQ Unmodified 997.50803 0.50802529 272 O60506-3;O60506-4;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes no 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 59.362 59.128 2 4.6372E-06 19750 20211116_3430_TMUAki_TMT10x_P_F3 141.78 120.63 20558000 33946000 119270 34458000 30679000 39289000 24555000 29945000 26821000 26828000 29726000 19142000 31677000 1908900 35189000 29266000 39517000 25298000 30824000 27290000 26330000 28586000 6 6 4 6 6 6 6 6 6 6 6 12893000 19899000 67048 21143000 22000000 31291000 17741000 18634000 17173000 16272000 18432000 12005000 18573000 1242600 21633000 20991000 30967000 18201000 19514000 17540000 15990000 17742000 4 4 3 4 4 4 4 4 4 4 4 7665500 14046000 52222 13315000 8678800 7997400 6813600 11311000 9648200 10555000 11294000 7137500 13104000 666370 13556000 8275800 8549700 7096600 11311000 9749800 10340000 10844000 2 2 1 2 2 2 2 2 2 2 2 2022300000 1318700000 703650000 7594 272 7079 40523;40524;40525;40526;40527 48661;48662;48663;48664;48665;48666 48663 6 GVEAVGSYAENQR Unmodified 1378.6477 0.64770667 1583 Q12996 CSTF3 Cleavage stimulation factor subunit 3 yes yes 0 0 0 0 By MS/MS 3 0 1 1 36.525 36.278 3 0.001015 11573 20211116_3441_TMUAki_TMT10x_S_F3 73.927 55.615 427280 677280 3015.9 726260 442090 369290 449440 631740 660880 500140 695200 397860 632160 38443 732110 424270 404120 462040 625130 664300 493890 669570 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 427280 677280 3015.9 726260 442090 369290 449440 631740 660880 500140 695200 397860 632160 38443 732110 424270 404120 462040 625130 664300 493890 669570 1 1 1 1 1 1 1 1 1 1 1 19359000 0 19359000 7595 1583 7080 40528 48667 48667 1 GVEEEEEDGEMRE Oxidation (M) 1552.5835 0.58351101 1350 P62306 SNRPF Small nuclear ribonucleoprotein F yes yes 0 0 1 1 By MS/MS By MS/MS 1 0 4 2 2 29.713 29.746 2;3 1.2221E-11 7827 20211116_3439_TMUAki_TMT10x_S_F1 148.91 143.6 547220 903460 4872.1 809800 1193400 636410 620170 345340 410850 336790 731010 509550 842670 58959 830150 1130200 652480 652560 365550 438490 329280 695270 4 4 4 4 4 4 4 4 4 4 4 220990 376790 2623.2 325510 856560 351390 234980 129790 156090 134250 297740 205780 351390 29668 336080 805840 351400 268410 143280 167270 130930 282840 2 2 2 2 2 2 2 2 2 2 2 326230 526670 2248.9 484290 336860 285010 385190 215550 254760 202540 433270 303770 491280 29291 494070 324350 301080 384150 222270 271220 198350 412430 2 2 2 2 2 2 2 2 2 2 2 76826000 48498000 28328000 7596 1350 7081 40529;40530;40531;40532 48668;48669;48670;48671 48670 1808 4 GVEEEEEDGEMRE Unmodified 1536.5886 0.58859639 1350 P62306 SNRPF Small nuclear ribonucleoprotein F yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 33.276 33.281 2 4.9613E-35 9261 20211116_3439_TMUAki_TMT10x_S_F1 271.65 259.04 234600 390020 0 466700 896240 242900 257890 107400 111070 101000 408280 218360 364220 7479.1 467340 842670 258210 290420 115840 129970 98905 384650 2 2 0 2 2 2 2 2 2 2 2 96352 172650 0 214220 761810 187630 145350 56700 57667 40624 192840 89635 161260 7479.1 215210 714320 189850 176950 63775 67300 40338 181850 1 1 0 1 1 1 1 1 1 1 1 138250 217370 0 252480 134430 55266 112540 50699 53404 60376 215440 128720 202960 0 252140 128350 68363 113470 52067 62666 58567 202810 1 1 0 1 1 1 1 1 1 1 1 39092000 20363000 18728000 7597 1350 7081 40533;40534 48672;48673 48673 2 GVEGLIDIENPNR Unmodified 1424.726 0.72595699 1634 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein yes yes 0 0 0 0 By MS/MS By MS/MS 2.9 0.943 1 2 4 3 4 6 60.413 60.197 2;3 1.0531E-25 18458 20211116_3440_TMUAki_TMT10x_S_F2 234.39 196.84 40332000 65878000 81419 69274000 49755000 53084000 42667000 43743000 42468000 42875000 50325000 37551000 61484000 2747300 70189000 47512000 54867000 43643000 44921000 43491000 41909000 48303000 11 11 4 11 11 11 11 11 11 11 11 16781000 26670000 17469 26959000 22368000 32798000 20650000 17058000 17540000 17467000 19850000 15623000 24887000 851830 27569000 21395000 32699000 20940000 18150000 18062000 17043000 19077000 4 4 1 4 4 4 4 4 4 4 4 23552000 39208000 63949 42316000 27387000 20286000 22016000 26686000 24928000 25407000 30475000 21928000 36597000 1895500 42620000 26117000 22168000 22703000 26771000 25430000 24867000 29226000 7 7 3 7 7 7 7 7 7 7 7 7228200000 3774900000 3453300000 7598 1634 7082 40535;40536;40537;40538;40539;40540;40541;40542;40543;40544 48674;48675;48676;48677;48678;48679;48680;48681;48682;48683;48684;48685;48686 48680 13 GVEICIATPGR Unmodified 1171.6019 0.60194245 710;2368 P17844;P17844-2;Q92841;Q92841-3;Q92841-1;Q92841-2 DDX5;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 no no 0 0 0 0 By MS/MS By MS/MS 4.75 2.22 2 1 2 2 2 3 2 2 8 8 48.929 49.002 2;3 1.8037E-14 14192 20211116_3433_TMUAki_TMT10x_P_F5 190.03 132.31 134790000 212750000 1028500 229520000 166880000 188350000 138450000 160380000 151470000 150170000 165960000 125500000 198580000 11546000 232350000 159290000 193790000 142330000 164170000 154040000 147080000 159640000 26 26 14 26 26 26 26 26 26 26 26 64553000 98854000 520130 108500000 92594000 127440000 72997000 75350000 71292000 72128000 78230000 60104000 92278000 5603600 110290000 88281000 127490000 75016000 79143000 72848000 70577000 75251000 14 14 7 14 14 14 14 14 14 14 14 70236000 113890000 508360 121020000 74284000 60904000 65457000 85033000 80181000 78039000 87726000 65397000 106300000 5942700 122060000 71009000 66296000 67313000 85029000 81194000 76505000 84393000 12 12 7 12 12 12 12 12 12 12 12 16346000000 8845000000 7501000000 7599 710;2368 7083 40545;40546;40547;40548;40549;40550;40551;40552;40553;40554;40555;40556;40557;40558;40559;40560 48687;48688;48689;48690;48691;48692;48693;48694;48695;48696;48697;48698;48699;48700;48701;48702;48703;48704;48705;48706;48707;48708;48709;48710;48711;48712;48713 48694 27 GVEITGFPEAQALGLEVFHAGTALK Unmodified 2554.3431 0.3431388 766 P22102;P22102-2 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 6 2.45 2 2 4 3 6 5 79.446 79.448 3;4 9.0932E-49 25545 20211116_3447_TMUAki_TMT10x_S_F8 211.64 197.23 48522000 79377000 541730 72343000 53215000 70232000 58573000 42791000 43996000 47349000 59387000 45181000 74041000 4349400 74267000 51177000 71061000 58682000 45029000 45942000 46055000 56812000 10 10 5 10 10 10 10 10 10 10 10 27865000 43588000 306760 39640000 25021000 47150000 29689000 24832000 25403000 27433000 32458000 25946000 40657000 2409800 40830000 24117000 47068000 29738000 26451000 26281000 26685000 31092000 5 5 2 5 5 5 5 5 5 5 5 20657000 35789000 234970 32703000 28195000 23082000 28884000 17960000 18593000 19916000 26929000 19235000 33383000 1939600 33437000 27060000 23992000 28944000 18577000 19661000 19370000 25720000 5 5 3 5 5 5 5 5 5 5 5 20184000000 10081000000 10103000000 7600 766 7084 40561;40562;40563;40564;40565;40566;40567;40568;40569;40570;40571 48714;48715;48716;48717;48718;48719;48720;48721;48722;48723 48723 10 GVEKPPHLAALILAR Unmodified 1583.9511 0.95114632 2254 Q8NFW8;Q8NFW8-2 CMAS N-acylneuraminate cytidylyltransferase yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 4 4 4 4 53.527 53.287 3;4 1.9151E-12 15613 20211116_3440_TMUAki_TMT10x_S_F2 141 118.81 20010000 32943000 408240 34657000 28653000 35052000 23765000 30609000 28883000 27123000 28793000 18634000 30745000 2103600 35241000 27372000 35584000 24520000 31241000 29156000 26633000 27778000 10 10 7 10 10 10 10 10 10 10 10 11099000 17492000 263340 18278000 19185000 26325000 15224000 16260000 15347000 14306000 15348000 10336000 16325000 1238800 18711000 18309000 26096000 15653000 16982000 15608000 14052000 14806000 5 5 3 5 5 5 5 5 5 5 5 8911500 15450000 144890 16379000 9468000 8726200 8541500 14349000 13535000 12817000 13445000 8298500 14420000 864820 16529000 9062800 9488100 8867000 14259000 13548000 12581000 12972000 5 5 4 5 5 5 5 5 5 5 5 2617000000 1419200000 1197900000 7601 2254 7085 40572;40573;40574;40575;40576;40577;40578;40579 48724;48725;48726;48727;48728;48729;48730;48731;48732;48733 48729 10 GVEPGPLGPEERPPPAADASEPR Unmodified 2324.1397 0.13968796 125 O14686;O14686-3 KMT2D Histone-lysine N-methyltransferase 2D yes no 0 0 0 1 By MS/MS 2 0 1 1 40.833 40.562 3 1.3802E-12 11754 20211116_3429_TMUAki_TMT10x_P_F2 115.54 101.51 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7602 125 7086 40580 48734 48734 1 GVESQGMLLCASIEGINR Oxidation (M) 1948.9346 0.93464591 1219 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 1 0 By MS/MS By MS/MS 5 0 2 1 1 61.732 61.855 3 0.00014288 19489 20211116_3433_TMUAki_TMT10x_P_F5 71.519 61.731 16136000 26694000 116100 25439000 20020000 22686000 18728000 21427000 18876000 20297000 21104000 15025000 24903000 1499300 25999000 19171000 23253000 19069000 21815000 19276000 19870000 20289000 5 5 4 5 5 5 5 5 5 5 5 4937400 8316400 41986 7512600 6681400 11059000 6147100 6617900 6283400 6242000 6256100 4597500 7757100 471790 7773900 6395500 10947000 6267400 6941500 6385400 6111800 6035900 2 2 1 2 2 2 2 2 2 2 2 11199000 18377000 74118 17926000 13339000 11628000 12581000 14809000 12593000 14055000 14848000 10427000 17146000 1027500 18225000 12775000 12305000 12802000 14874000 12891000 13758000 14253000 3 3 3 3 3 3 3 3 3 3 3 957990000 437070000 520920000 7603 1219 7087 40581;40582 48735;48736;48737;48738;48739 48735 1635 5 GVEVHIVADATSSR Unmodified 1439.7369 0.73685603 2424 Q96CN7 ISOC1 Isochorismatase domain-containing protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4 1.15 1 2 3 2 1 4 5 38.601 38.607 3 7.42E-15 11426 20211116_3430_TMUAki_TMT10x_P_F3 158.52 141.31 5855500 9408100 175060 10382000 8564100 7389700 5941000 8151800 8044600 6703400 7502700 5453100 8782400 593990 10478000 8153700 7729800 6228500 8206400 8072700 6606600 7254300 8 8 4 8 8 8 8 8 8 8 8 2471700 3793700 92378 3817400 5231300 4442400 2866600 3708800 3479700 2861200 2692000 2302100 3540000 329670 3902000 4962200 4470600 3050300 3782500 3485200 2829400 2621300 3 3 3 3 3 3 3 3 3 3 3 3383800 5614400 82680 6564400 3332700 2947300 3074400 4443100 4564900 3842200 4810600 3151000 5242400 264330 6575600 3191500 3259300 3178200 4423900 4587500 3777200 4633000 5 5 1 5 5 5 5 5 5 5 5 926530000 626010000 300520000 7604 2424 7088 40583;40584;40585;40586;40587;40588;40589;40590;40591 48740;48741;48742;48743;48744;48745;48746;48747;48748 48741 9 GVEVTVGHEQEEGGK Unmodified 1553.7322 0.73216458 2 P0DPI2;A0A0B4J2D5;P0DPI2-2;A0A0B4J2D5-2 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 33.582 33.343 3 1.2315E-09 10394 20211116_3441_TMUAki_TMT10x_S_F3 125.36 105.8 154750 240410 635.53 275040 119120 134200 140850 173110 181530 168510 203670 144090 224460 12923 276030 114800 146280 143000 173900 183680 164760 195790 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 154750 240410 635.53 275040 119120 134200 140850 173110 181530 168510 203670 144090 224460 12923 276030 114800 146280 143000 173900 183680 164760 195790 1 1 1 1 1 1 1 1 1 1 1 16323000 0 16323000 7605 2 7089 40592;40593 48749;48750 48750 2 GVEVTVGHEQEEGGKWPYAGTAEAIK Unmodified 2741.3297 0.32967358 2 P0DPI2;A0A0B4J2D5;P0DPI2-2;A0A0B4J2D5-2 yes no 0 0 0 1 By MS/MS By MS/MS 4.75 1.09 1 2 1 2 2 53.78 53.858 4 2.0248E-30 15067 20211116_3444_TMUAki_TMT10x_S_F5 171.52 148.55 35327000 58989000 316130 67570000 44549000 43988000 40366000 25824000 22428000 27281000 40094000 32895000 55075000 3289600 67974000 42626000 45859000 40609000 27216000 24229000 26584000 38130000 8 8 6 8 8 8 8 8 8 8 8 14996000 24627000 155940 28596000 21799000 27999000 20546000 11703000 10236000 11823000 16532000 13963000 22995000 1477600 28884000 20879000 28194000 20587000 12725000 11088000 11542000 15753000 4 4 3 4 4 4 4 4 4 4 4 20331000 34362000 160190 38974000 22750000 15989000 19820000 14121000 12192000 15459000 23562000 18931000 32081000 1812000 39090000 21746000 17665000 20021000 14492000 13140000 15043000 22377000 4 4 3 4 4 4 4 4 4 4 4 2306200000 983590000 1322600000 7606 2 7090 40594;40595;40596;40597 48751;48752;48753;48754;48755;48756;48757;48758 48756 8 GVFEAIVDQSPFVPEETMEEQK Oxidation (M) 2524.1679 0.16793613 1724 Q14684;Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 78.996 78.974 3 1.6243E-07 27799 20211116_3439_TMUAki_TMT10x_S_F1 90.972 76.359 6663900 11470000 0 9619700 8491400 10132000 8967200 7816100 8421700 7950000 9266400 6204000 10696000 477870 9952100 8147400 10238000 9054100 8067700 8621500 7758900 8912800 3 3 0 3 3 3 3 3 3 3 3 2221900 3563100 0 3135500 2005600 4296100 2319000 2745100 3010200 2573600 2484200 2068500 3323100 151500 3246300 1929000 4270100 2357300 2864100 3013400 2520500 2412700 1 1 0 1 1 1 1 1 1 1 1 4442100 7907200 0 6484200 6485800 5835500 6648200 5071100 5411500 5376400 6782200 4135400 7372900 326370 6705800 6218400 5967600 6696800 5203600 5608000 5238300 6500100 2 2 0 2 2 2 2 2 2 2 2 1435900000 690320000 745560000 7607 1724 7091 40598;40599 48759;48760;48761 48760 2318 3 GVFPENFTERVP Unmodified 1390.6881 0.68811492 97 O00499;O00499-10;O00499-2;O00499-9;O00499-7;O00499-8;O00499-4;O00499-6;O00499-11;O00499-3;O00499-5 BIN1 Myc box-dependent-interacting protein 1 yes no 0 0 0 1 By MS/MS 4 0 1 1 62.215 62.077 2 0.00013133 19815 20211116_3442_TMUAki_TMT10x_S_F4 93.096 57.216 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7608 97 7092 40600 48762 48762 1 GVFVQSVLPYFVATK Unmodified 1653.913 0.91302948 1905 Q53GQ0 HSD17B12 Very-long-chain 3-oxoacyl-CoA reductase yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 3 1 2 79.862 79.851 2;3 2.0457E-23 26053 20211116_3445_TMUAki_TMT10x_S_F6 181.66 136.5 22531000 37206000 199550 36036000 28397000 29529000 31164000 19770000 19403000 21652000 27044000 20979000 34712000 2075900 36748000 27306000 30264000 31102000 20650000 20525000 21069000 25852000 4 4 2 4 4 4 4 4 4 4 4 5128900 8866700 110690 8226900 5040800 9687100 6240700 4768000 4772500 5695100 6251400 4776400 8271200 527150 8459900 4870200 9667900 6222000 5123800 4971900 5524000 5984700 1 1 1 1 1 1 1 1 1 1 1 17402000 28339000 88852 27809000 23356000 19842000 24923000 15002000 14631000 15957000 20793000 16203000 26441000 1548700 28288000 22436000 20596000 24880000 15526000 15553000 15545000 19867000 3 3 1 3 3 3 3 3 3 3 3 4330400000 1605100000 2725300000 7609 1905 7093 40601;40602;40603 48763;48764;48765;48766 48765 4 GVFVVAAK Unmodified 789.47487 0.47487467 1019 P42765 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4 3.29 2 1 2 2 3 51.099 51.004 2 0.00022219 14394 20211116_3428_TMUAki_TMT10x_P_F1 163.41 127.22 13754000 21699000 67497 23286000 17502000 19795000 14326000 15348000 14386000 15153000 17901000 12807000 20254000 1250400 23591000 16706000 20281000 14700000 15823000 14757000 14807000 17159000 4 4 3 4 4 4 4 4 4 4 4 7331600 11002000 40367 11982000 10416000 13710000 7689900 8022300 7647700 7913800 9679800 6826700 10270000 688650 12181000 9921000 13733000 7941400 8440300 7854200 7733500 9274900 2 2 2 2 2 2 2 2 2 2 2 6422100 10697000 27130 11303000 7086300 6085000 6636300 7325300 6738100 7239400 8220800 5979800 9983700 561720 11410000 6784700 6548700 6758200 7382700 6903000 7073900 7884400 2 2 1 2 2 2 2 2 2 2 2 443200000 202740000 240460000 7610 1019 7094 40604;40605;40606;40607;40608 48767;48768;48769;48770;48771;48772 48767 6 GVGAEPLLPWNR Unmodified 1307.6986 0.69862003 2772 Q9H0D6;Q9H0D6-2 XRN2 5'-3' exoribonuclease 2 yes no 0 0 0 0 By MS/MS 7 0 1 1 62.666 63.338 2 1.2038E-15 20768 20211116_3435_TMUAki_TMT10x_P_F7 196.88 158.64 12874000 20072000 109930 19117000 14896000 24191000 17732000 13170000 11058000 12385000 15387000 11988000 18726000 1198100 19646000 14361000 24084000 17632000 13923000 11695000 12128000 14709000 2 2 2 2 2 2 2 2 2 2 2 12874000 20072000 109930 19117000 14896000 24191000 17732000 13170000 11058000 12385000 15387000 11988000 18726000 1198100 19646000 14361000 24084000 17632000 13923000 11695000 12128000 14709000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 787930000 787930000 0 7611 2772 7095 40609 48773;48774 48774 2 GVGASGSFR Unmodified 836.41407 0.41406533 534 P07305;P07305-2 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 30.717 30.702 2 2.2821E-07 6981 20211116_3433_TMUAki_TMT10x_P_F5 199.75 85.252 2095800 3548000 24531 3046300 3838300 4787400 2862400 2593800 2734400 2436300 3042800 1951600 3308800 221030 3169200 3657300 4720400 2950600 2743200 2798400 2385900 2925700 3 3 3 3 3 3 3 3 3 3 3 2095800 3548000 24531 3046300 3838300 4787400 2862400 2593800 2734400 2436300 3042800 1951600 3308800 221030 3169200 3657300 4720400 2950600 2743200 2798400 2385900 2925700 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 93243000 93243000 0 7612 534 7096 40610;40611 48775;48776;48777 48777 3 GVGDDQLGEESEERDDHLLPM Oxidation (M) 2356.0125 0.012498119 746 P20645 M6PR Cation-dependent mannose-6-phosphate receptor yes yes 0 0 1 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 49.682 49.504 3 4.2388E-19 15818 20211116_3439_TMUAki_TMT10x_S_F1 146.1 138.26 7683200 13071000 56724 14131000 14167000 21087000 10540000 14589000 14780000 12408000 12140000 7154200 12201000 446430 14445000 13496000 20907000 11012000 15096000 14757000 12208000 11793000 4 4 3 4 4 4 4 4 4 4 4 6278400 10308000 15770 11303000 13153000 19909000 9906900 11711000 11730000 9876100 9990300 5846000 9622600 297270 11589000 12531000 19567000 10275000 12266000 11792000 9721100 9691100 3 3 2 3 3 3 3 3 3 3 3 1404700 2762600 40953 2828300 1014100 1177800 632840 2877400 3049800 2532300 2149500 1308200 2578000 149160 2856000 965230 1339900 736670 2829500 2965000 2487400 2101400 1 1 1 1 1 1 1 1 1 1 1 2205200000 1556900000 648310000 7613 746 7097 40612;40613;40614 48778;48779;48780;48781 48781 856 4 GVGDDQLGEESEERDDHLLPM Unmodified 2340.0176 0.017583497 746 P20645 M6PR Cation-dependent mannose-6-phosphate receptor yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 57.46 57.309 3 1.2216E-10 16996 20211116_3428_TMUAki_TMT10x_P_F1 117.74 108.46 6688900 11126000 42297 11269000 7635900 8409000 7225500 5904700 6479400 6134700 8215800 6228000 10383000 571150 11444000 7311500 8686700 7327500 6136800 6686000 5981900 7871800 3 3 2 3 3 3 3 3 3 3 3 2580400 3941300 0 3968900 3282100 4684600 3330100 1794200 2304500 2135600 2908100 2402300 3677800 187670 4057700 3145900 4663200 3343600 1980300 2410800 2071700 2786700 1 1 0 1 1 1 1 1 1 1 1 4108500 7185000 42297 7300200 4353700 3724500 3895400 4110500 4174900 3999000 5307700 3825700 6704800 383480 7385800 4165600 4023500 3983900 4156500 4275200 3910200 5085100 2 2 2 2 2 2 2 2 2 2 2 1161800000 584550000 577230000 7614 746 7097 40615;40616 48782;48783;48784 48782 3 GVGDGTVSWGLEDDEDMTLTR Oxidation (M) 2267.9852 0.98522074 1627;1833 Q13404;Q13404-7;Q13404-2;Q13404-1;Q13404-8;Q15819 UBE2V1;UBE2V2 Ubiquitin-conjugating enzyme E2 variant 1;Ubiquitin-conjugating enzyme E2 variant 2 no no 0 0 1 0 By MS/MS By MS/MS 1.57 0.728 4 2 1 3 4 65.631 65.399 2;3 5.0135E-32 20369 20211116_3428_TMUAki_TMT10x_P_F1 179.67 170.62 9020400 15506000 66478 14134000 10530000 10764000 10416000 8057200 8110000 8986800 11047000 8399000 14464000 781360 14466000 10095000 11113000 10500000 8356500 8455700 8738700 10566000 5 5 3 5 5 5 5 5 5 5 5 2193900 3406600 32966 3423100 2434100 3761600 2458100 1594500 1780300 2153700 2445900 2042900 3178800 215970 3496000 2336600 3762500 2471100 1747300 1864400 2080400 2338900 1 1 1 1 1 1 1 1 1 1 1 6826500 12100000 33512 10711000 8096300 7002600 7958300 6462700 6329700 6833100 8601100 6356000 11285000 565390 10970000 7758500 7350400 8029300 6609200 6591200 6658300 8226900 4 4 2 4 4 4 4 4 4 4 4 2933300000 1058000000 1875400000 7615 1627;1833 7098 40617;40618;40619;40620;40621;40622;40623 48785;48786;48787;48788;48789;48790;48791 48786 2177 7 GVGFIRFDK Unmodified 1037.5658 0.56581494 815;1717 P26378;P26378-4;P26378-2;P26378-5;P26378-1;P26378-3;Q12926;Q12926-2;Q14576-2;Q14576 ELAVL4;ELAVL2;ELAVL3 ELAV-like protein 4;ELAV-like protein 2;ELAV-like protein 3 no no 0 0 0 1 By MS/MS 2 0 1 1 53.144 52.893 3 0.0019335 16769 20211116_3429_TMUAki_TMT10x_P_F2 76.345 51.501 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7616 815;1717 7099 40624 48792 48792 1 GVGGKLPNFGFVVFDDSEPVQR Unmodified 2363.191 0.19099525 3188 Q9UN86;Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 yes no 0 0 0 1 By MS/MS 7 0 1 1 76.731 76.84 3 1.9992E-12 26485 20211116_3435_TMUAki_TMT10x_P_F7 119.27 106.48 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7617 3188 7100 40625 48793 48793 1 GVGIISEGNETVEDIAAR Unmodified 1828.9167 0.91667089 497 P05023;P05023-3;P05023-4;P13637;P13637-2;P13637-3;P50993 ATP1A1;ATP1A3;ATP1A2 Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2 yes no 0 0 0 0 By MS/MS By MS/MS 2.36 1.11 4 4 3 3 7 7 61.678 61.473 2;3 3.116E-171 20769 20211116_3439_TMUAki_TMT10x_S_F1 430.07 371.39 67496000 113170000 1853300 119770000 83450000 101730000 77612000 83395000 79314000 75321000 92480000 62858000 105630000 7381500 121450000 79970000 104340000 79083000 85474000 81081000 73895000 88804000 18 18 13 18 18 18 18 18 18 18 18 32377000 50603000 592490 56952000 40460000 62120000 41950000 39202000 36729000 34148000 42794000 30149000 47242000 3198900 57729000 38859000 62450000 42312000 40863000 37809000 33559000 41094000 8 8 5 8 8 8 8 8 8 8 8 35119000 62570000 1260800 62822000 42990000 39611000 35662000 44193000 42585000 41172000 49686000 32709000 58385000 4182600 63724000 41112000 41887000 36771000 44611000 43272000 40336000 47711000 10 10 8 10 10 10 10 10 10 10 10 13863000000 7985900000 5877400000 7618 497 7101 40626;40627;40628;40629;40630;40631;40632;40633;40634;40635;40636;40637;40638;40639 48794;48795;48796;48797;48798;48799;48800;48801;48802;48803;48804;48805;48806;48807;48808;48809;48810;48811;48812;48813 48804 20 GVGISVLEMSHR Oxidation (M) 1299.6605 0.66051996 3335 Q9Y617;Q9Y617-2 PSAT1 Phosphoserine aminotransferase yes no 0 0 1 0 By MS/MS By MS/MS 5.25 1.92 1 1 2 2 2 3 1 6 6 40.479 40.713 3 3.1715E-12 10818 20211116_3431_TMUAki_TMT10x_P_F4 134.98 120.1 10984000 16980000 165140 18896000 20104000 17402000 12861000 14373000 13870000 13317000 15651000 10228000 15852000 853570 19120000 19101000 17752000 13456000 14735000 14130000 13050000 15042000 16 16 10 16 16 16 16 16 16 16 16 6025300 8722700 123170 10145000 14772000 12726000 8099600 7665200 6841600 7040100 8384900 5610800 8144500 528900 10287000 14002000 12692000 8525700 8030200 7070000 6901500 8040800 6 6 4 6 6 6 6 6 6 6 6 4958300 8257800 41969 8751700 5332000 4675600 4761700 6707600 7028600 6277300 7265700 4616800 7707200 324660 8832300 5099100 5060300 4930000 6704400 7059600 6148500 7001700 10 10 6 10 10 10 10 10 10 10 10 3982300000 2296000000 1686400000 7619 3335 7102 40640;40641;40642;40643;40644;40645;40646;40647;40648;40649;40650;40651 48814;48815;48816;48817;48818;48819;48820;48821;48822;48823;48824;48825;48826;48827;48828;48829;48830;48831;48832 48815 3288 19 GVGISVLEMSHR Unmodified 1283.6656 0.66560534 3335 Q9Y617;Q9Y617-2 PSAT1 Phosphoserine aminotransferase yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 47.639 47.972 3 3.1846E-24 15015 20211116_3446_TMUAki_TMT10x_S_F7 238.92 205.66 4687100 7862400 130830 8294600 7057500 7275700 6066800 5651000 5481700 5445700 6851400 4365100 7338100 543720 8416100 6750100 7438300 6187500 5821400 5650900 5327000 6566900 4 4 4 4 4 4 4 4 4 4 4 2064800 3573500 64988 3769500 4573100 4971600 3311300 2666100 2613600 2487300 3310300 1923000 3335100 266880 3849600 4357100 4938800 3403200 2821700 2714200 2436600 3171800 2 2 2 2 2 2 2 2 2 2 2 2622300 4288900 65841 4525100 2484400 2304000 2755400 2984900 2868000 2958400 3541100 2442100 4002900 276840 4566500 2392900 2499500 2784300 2999700 2936700 2890500 3395100 2 2 2 2 2 2 2 2 2 2 2 2017800000 1091900000 925940000 7620 3335 7102 40652;40653;40654;40655 48833;48834;48835;48836 48836 4 GVGVALDDPYENYRR Unmodified 1722.8325 0.83254733 2149 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein yes yes 0 0 0 1 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 45.881 46.009 3 2.1942E-30 12753 20211116_3431_TMUAki_TMT10x_P_F4 214.65 175.65 19831000 30169000 177070 36306000 34111000 35062000 22769000 25923000 27101000 23995000 28982000 18465000 28174000 1925800 36586000 32428000 35590000 23823000 26760000 27447000 23514000 27900000 8 8 5 8 8 8 8 8 8 8 8 13637000 19705000 110900 23991000 28348000 29717000 17580000 17215000 18259000 15777000 19705000 12697000 18403000 1362400 24258000 26913000 29639000 18416000 18091000 18597000 15467000 18964000 5 5 3 5 5 5 5 5 5 5 5 6194100 10464000 66165 12315000 5763000 5344900 5189300 8708200 8841500 8218000 9276900 5767700 9770700 563420 12328000 5515000 5950500 5406800 8669500 8850300 8046300 8935600 3 3 2 3 3 3 3 3 3 3 3 2115700000 1421700000 694040000 7621 2149 7103 40656;40657;40658;40659;40660 48837;48838;48839;48840;48841;48842;48843;48844 48839 8 GVIDMGNSLIER Oxidation (M) 1318.6551 0.65510023 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 1 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 46.263 46.257 2 1.593E-05 13220 20211116_3442_TMUAki_TMT10x_S_F4 109.11 85.968 8364000 13896000 9372.2 16514000 11117000 13462000 7559900 15611000 17735000 13107000 13647000 7787600 12976000 722170 16616000 10570000 13951000 8169300 15689000 17452000 12904000 13292000 6 6 2 6 6 6 6 6 6 6 6 3052700 4831900 6391 5837800 7442700 9380900 4449800 5415900 6033100 4683900 4860100 2842300 4512400 311280 5937400 7061000 9249000 4719200 5684700 6026800 4604700 4724600 2 2 1 2 2 2 2 2 2 2 2 5311300 9063700 2981.3 10676000 3674700 4081100 3110100 10195000 11701000 8423100 8787400 4945300 8463400 410890 10679000 3508800 4701700 3450200 10004000 11425000 8299500 8567100 4 4 1 4 4 4 4 4 4 4 4 888750000 498240000 390500000 7622 1663 7104 40661;40662;40663;40664 48845;48846;48847;48848;48849;48850 48850 2226 6 GVIDMGNSLIER Unmodified 1302.6602 0.66018561 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 59.406 59.557 2 1.8094E-07 18527 20211116_3433_TMUAki_TMT10x_P_F5 110.74 90.223 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7623 1663 7104 40665;40666 48851;48852 48851 2 GVIINTASVAAFEGQVGQAAYSASK Unmodified 2438.2442 0.24415304 2598 Q99714;Q99714-2 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 0 0 0 0 By MS/MS By MS/MS 6.83 2.61 2 10 7 5 91.267 91.179 2;3;4 3.1277E-29 25652 20211116_3436_TMUAki_TMT10x_P_F8 168.41 155.01 8929300 16571000 66702 15721000 11573000 15416000 13253000 8135800 7315300 9054700 12583000 8314200 15459000 444620 16094000 11141000 15560000 13171000 8666800 7888800 8805500 11976000 7 7 4 7 7 7 7 7 7 7 7 5314300 9860000 3585.8 10944000 6381600 11326000 8456300 5178200 4981400 5708900 8318700 4947900 9204500 64850 11094000 6169100 11377000 8361500 5591000 5338200 5553700 7921400 4 4 2 4 4 4 4 4 4 4 4 3614900 6710800 63117 4776800 5191600 4089400 4796500 2957600 2333900 3345800 4264700 3366300 6254600 379770 4999400 4971800 4183000 4809700 3075800 2550700 3251700 4054200 3 3 2 3 3 3 3 3 3 3 3 6900500000 4235900000 2664600000 7624 2598 7105 40667;40668;40669;40670;40671;40672;40673;40674;40675;40676;40677;40678 48853;48854;48855;48856;48857;48858;48859;48860;48861;48862 48856 10 GVIQVYDLGQDGQGMSR Oxidation (M) 1837.8629 0.86286118 354 O75694;O75694-2 NUP155 Nuclear pore complex protein Nup155 yes no 0 0 1 0 By MS/MS 4 0 1 1 54.922 54.937 3 0.010185 16847 20211116_3442_TMUAki_TMT10x_S_F4 50.188 41.459 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7625 354 7106 40679 48863 48863 271 1 GVIVDKDFSHPQMPK Oxidation (M) 1712.8556 0.85559095 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 1 1 By MS/MS 6.5 0.5 1 1 2 41.408 41.652 4 0.015501 10037 20211116_3434_TMUAki_TMT10x_P_F6 52.5 33.904 5437100 8948700 0 8067700 11489000 15193000 8267600 14015000 12941000 9077400 8762900 5061700 8346800 432290 8399200 10928000 15012000 8699300 14161000 12812000 9068900 8582600 1 1 0 1 1 1 1 1 1 1 1 5437100 8948700 0 8067700 11489000 15193000 8267600 14015000 12941000 9077400 8762900 5061700 8346800 432290 8399200 10928000 15012000 8699300 14161000 12812000 9068900 8582600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1624500000 1624500000 0 7626 1079 7107 40680;40681 48864 48864 1403 1 GVKPQAK Unmodified 726.43882 0.43882351 1740 Q14978;Q14978-2;Q14978-3 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 28.615 28.655 3 0.029301 5512 20211116_3428_TMUAki_TMT10x_P_F1 66.258 43.428 610390 943910 0 695460 570300 765490 620900 362660 400200 411140 575300 568290 879840 45655 728080 547810 766460 620330 390510 423010 399540 549550 2 2 0 2 2 2 2 2 2 2 2 321380 474770 0 341600 308260 453950 319150 188710 208520 207750 295570 299230 442520 25241 359570 295770 449560 319740 205820 220070 202110 282430 1 1 0 1 1 1 1 1 1 1 1 289000 469130 0 353860 262040 311540 301750 173950 191680 203390 279730 269070 437320 20414 368510 252040 316900 300590 184690 202940 197430 267120 1 1 0 1 1 1 1 1 1 1 1 17194000 10097000 7096600 7627 1740 7108 40682;40683 48865;48866 48865 2 GVLDVPACQIAIRPEGK Unmodified 1821.9771 0.97710307 728 P19174-2;P19174 PLCG1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 yes no 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 55.994 56.439 3 3.615E-43 18439 20211116_3446_TMUAki_TMT10x_S_F7 228.46 211.93 20857000 35770000 305830 37374000 30701000 38010000 24589000 23285000 20109000 20367000 27612000 19422000 33383000 2152100 38024000 29302000 38352000 25123000 24330000 20920000 20011000 26404000 4 4 4 4 4 4 4 4 4 4 4 14667000 24044000 205910 24556000 23778000 32307000 19580000 16447000 14108000 14031000 18927000 13658000 22437000 1535500 25131000 22706000 32078000 19911000 17451000 14763000 13803000 18109000 3 3 3 3 3 3 3 3 3 3 3 6189800 11726000 99923 12818000 6922800 5703500 5009300 6837400 6001300 6335500 8685500 5764000 10946000 616570 12893000 6595800 6274600 5212000 6879500 6157200 6208300 8295500 1 1 1 1 1 1 1 1 1 1 1 2554400000 1688300000 866070000 7628 728 7109 40684;40685;40686 48867;48868;48869;48870 48870 4 GVLFGVPGAFTPGCSK Unmodified 1592.8021 0.80209882 860 P30044;P30044-2;P30044-3 PRDX5 Peroxiredoxin-5, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 3.4 0.917 2 3 4 1 5 5 74.651 74.569 2;3 2.3584E-42 26077 20211116_3430_TMUAki_TMT10x_P_F3 222.49 193.69 36754000 63939000 439070 58434000 41350000 61985000 46748000 42846000 42155000 44395000 49563000 34225000 59641000 3490000 60054000 39809000 62497000 46994000 44575000 43349000 43294000 47582000 13 13 10 13 13 13 13 13 13 13 13 22956000 38353000 296410 35902000 22768000 44428000 27816000 26406000 25643000 27108000 30003000 21376000 35778000 2155800 36927000 21974000 44329000 27884000 27778000 26337000 26446000 28808000 8 8 7 8 8 8 8 8 8 8 8 13799000 25586000 142660 22532000 18583000 17557000 18932000 16441000 16512000 17286000 19560000 12849000 23863000 1334200 23128000 17835000 18168000 19111000 16797000 17012000 16848000 18774000 5 5 3 5 5 5 5 5 5 5 5 12337000000 5683100000 6654200000 7629 860 7110 40687;40688;40689;40690;40691;40692;40693;40694;40695;40696 48871;48872;48873;48874;48875;48876;48877;48878;48879;48880;48881;48882;48883 48875 13 GVLFHSGGK Unmodified 900.48175 0.48175096 1025 P43034 PAFAH1B1 Platelet-activating factor acetylhydrolase IB subunit alpha yes yes 0 0 0 0 By MS/MS 1 0 1 1 35.236 35.236 3 0.049822 8065 20211116_3428_TMUAki_TMT10x_P_F1 41.427 20.275 2703000 3802100 0 4592700 7037000 4030100 3585500 1251100 1106500 1491000 3080700 2516800 3550700 280480 4621000 6660400 4077800 3740700 1419500 1304200 1446300 2910800 1 1 0 1 1 1 1 1 1 1 1 2703000 3802100 0 4592700 7037000 4030100 3585500 1251100 1106500 1491000 3080700 2516800 3550700 280480 4621000 6660400 4077800 3740700 1419500 1304200 1446300 2910800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32030000 32030000 0 7630 1025 7111 40697 48884 48884 1 GVLFYGPPGCGK Unmodified 1250.6118 0.61177885 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 By MS/MS By MS/MS 3.71 2.74 4 4 4 1 4 9 8 58.64 58.48 2;3 4.5403E-20 18988 20211116_3429_TMUAki_TMT10x_P_F2 235.82 194.79 178950000 298810000 654750 313340000 253260000 304070000 209920000 226200000 208210000 210850000 237990000 166610000 278870000 12782000 318500000 241720000 308590000 215150000 233460000 212950000 206560000 228660000 21 21 8 21 21 21 21 21 21 21 21 102590000 166940000 431600 175120000 170820000 234480000 142150000 135140000 122960000 126740000 134180000 95514000 155810000 8936300 178960000 163030000 232980000 145090000 142160000 126330000 124120000 129090000 12 12 5 12 12 12 12 12 12 12 12 76361000 131860000 223150 138220000 82441000 69591000 67777000 91061000 85250000 84112000 103810000 71100000 123070000 3845600 139530000 78684000 75610000 70057000 91293000 86621000 82434000 99567000 9 9 3 9 9 9 9 9 9 9 9 22802000000 13125000000 9677300000 7631 1235 7112 40698;40699;40700;40701;40702;40703;40704;40705;40706;40707;40708;40709;40710;40711;40712;40713;40714 48885;48886;48887;48888;48889;48890;48891;48892;48893;48894;48895;48896;48897;48898;48899;48900;48901;48902;48903;48904;48905;48906 48889 22 GVLHQVMVLDSEALR Oxidation (M) 1681.8821 0.88214006 2970 Q9NVH1;Q9NVH1-3;Q9NVH1-2 DNAJC11 DnaJ homolog subfamily C member 11 yes no 0 0 1 0 By MS/MS 5.5 0.5 1 1 2 55.69 55.808 3 0.0093139 15836 20211116_3444_TMUAki_TMT10x_S_F5 57.328 41.788 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7632 2970 7113 40715;40716 48907;48908 48907 3053 2 GVLIAVLDTGVDPGAPGMQVTTDGKPK Oxidation (M) 2651.384 0.38401734 848 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 1 1 By MS/MS By matching 7 0 2 1 1 73.321 73.546 4 1.4435E-05 25132 20211116_3435_TMUAki_TMT10x_P_F7 64.954 52.988 9440400 14693000 655870 16372000 8844000 17707000 10850000 9397000 8732800 9453400 11289000 8794800 13716000 1385600 16604000 8570200 17770000 10835000 9975300 9067500 9230300 10811000 2 2 2 2 2 2 2 2 2 2 2 9440400 14693000 655870 16372000 8844000 17707000 10850000 9397000 8732800 9453400 11289000 8794800 13716000 1385600 16604000 8570200 17770000 10835000 9975300 9067500 9230300 10811000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1785100000 797120000 988010000 7633 848 7114 40717;40718 48909;48910 48910 1018 2 GVLLFGPPGTGK Unmodified 1141.6495 0.64954457 945 P35998;P35998-2 PSMC2 26S protease regulatory subunit 7 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 66.526 66.203 2 2.2111E-07 22724 20211116_3430_TMUAki_TMT10x_P_F3 135.43 74.456 26311000 40654000 71919 45037000 27258000 38439000 26918000 25319000 24984000 26056000 30845000 24496000 37951000 1953500 45537000 26112000 39272000 27262000 26426000 25710000 25417000 29574000 5 5 2 5 5 5 5 5 5 5 5 17334000 26435000 32875 28948000 18282000 29809000 18230000 16294000 16619000 17306000 19857000 16138000 24676000 1276600 29368000 17517000 30010000 18444000 17279000 17092000 16861000 19056000 3 3 1 3 3 3 3 3 3 3 3 8976600 14219000 39044 16089000 8976100 8630700 8687800 9025000 8365000 8749900 10987000 8357500 13275000 676920 16170000 8595000 9261300 8817500 9147900 8617100 8556900 10518000 2 2 1 2 2 2 2 2 2 2 2 1747700000 1017900000 729800000 7634 945 7115 40719;40720;40721;40722 48911;48912;48913;48914;48915 48913 5 GVLLHGPPGCGK Unmodified 1190.623 0.62301224 187 O15381;O15381-3;O15381-4;O15381-2;O15381-5 NVL Nuclear valosin-containing protein-like yes no 0 0 0 0 By matching By MS/MS 1 0 2 1 1 37.676 37.633 3 2.6884E-07 11008 20211116_3439_TMUAki_TMT10x_S_F1 121.83 106.39 518950 936140 1182.1 951440 598000 524530 509140 801050 864500 716170 876200 483200 873580 45234 963160 571230 566910 532090 797960 864350 702950 844880 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 518950 936140 1182.1 951440 598000 524530 509140 801050 864500 716170 876200 483200 873580 45234 963160 571230 566910 532090 797960 864350 702950 844880 1 1 1 1 1 1 1 1 1 1 1 63242000 34644000 28598000 7635 187 7116 40723;40724 48916 48916 1 GVLLMLFGGVPK Oxidation (M) 1245.7155 0.71551564 1716 Q14566 MCM6 DNA replication licensing factor MCM6 yes yes 0 0 1 0 By MS/MS By MS/MS 6 0 3 2 1 79.363 79.349 2;3 0.00031681 25499 20211116_3434_TMUAki_TMT10x_P_F6 81.865 58.26 10155000 19118000 147460 15146000 13641000 15737000 14907000 12468000 13284000 14293000 14026000 9456500 17824000 989490 15741000 13118000 15922000 15004000 12896000 13612000 13885000 13507000 2 2 1 2 2 2 2 2 2 2 2 1461700 2552600 0 2258700 1756800 3029400 1735200 1451800 1571900 1932600 1723900 1360700 2380800 86615 2336500 1681400 3003200 1756100 1570100 1611700 1867700 1658300 1 1 0 1 1 1 1 1 1 1 1 8693700 16565000 147460 12888000 11884000 12708000 13172000 11016000 11712000 12361000 12302000 8095800 15443000 902880 13405000 11436000 12919000 13248000 11326000 12000000 12017000 11849000 1 1 1 1 1 1 1 1 1 1 1 1111600000 615050000 496530000 7636 1716 7117 40725;40726;40727 48917;48918 48917 2306 2 GVLLMLFGGVPK Unmodified 1229.7206 0.72060102 1716 Q14566 MCM6 DNA replication licensing factor MCM6 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 4 2 2 81.304 81.305 2;3 4.1064E-15 26958 20211116_3436_TMUAki_TMT10x_P_F8 189.14 161.39 5239400 8437700 59703 7958800 5157800 5737600 6716800 2795300 2516400 3485100 4495500 4878700 7871500 471480 8119900 4987200 5916000 6601600 3011200 2814100 3375300 4275400 5 5 4 5 5 5 5 5 5 5 5 1991200 3045400 24632 3070400 2005500 2748500 2375100 1082800 1055100 1297600 1679500 1854100 2841800 170840 3125700 1932700 2782400 2349000 1191400 1153300 1258500 1600800 2 2 1 2 2 2 2 2 2 2 2 3248100 5392300 35071 4888400 3152300 2989100 4341700 1712500 1461300 2187400 2816000 3024600 5029700 300640 4994200 3054600 3133600 4252600 1819800 1660700 2116800 2674600 3 3 3 3 3 3 3 3 3 3 3 326400000 154990000 171400000 7637 1716 7117 40728;40729;40730;40731 48919;48920;48921;48922;48923 48919 5 GVLLYGPPGCGK Unmodified 1216.6274 0.62742892 2229 Q8NBU5;Q8NBU5-2 ATAD1 ATPase family AAA domain-containing protein 1 yes no 0 0 0 0 By MS/MS 2 0 1 1 55.555 55.306 2 1.0949E-14 17752 20211116_3429_TMUAki_TMT10x_P_F2 152.63 124.46 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7638 2229 7118 40732 48924 48924 1 GVLLYGPPGTGK Unmodified 1157.6445 0.64445919 1337 P62195;P62195-2;Q8NB90-3 PSMC5;SPATA5 26S protease regulatory subunit 8;Spermatogenesis-associated protein 5 no no 0 0 0 0 By MS/MS By MS/MS 1.45 0.498 6 5 5 6 55.412 55.201 2;3 9.2309E-17 18761 20211116_3439_TMUAki_TMT10x_S_F1 183.67 0 25469000 41309000 183390 47307000 36395000 39404000 27564000 31016000 32522000 29226000 34208000 23714000 38568000 2235000 47719000 34673000 40441000 28575000 31904000 32928000 28617000 32947000 8 8 2 8 8 8 8 8 8 8 8 12228000 20157000 176250 22818000 24285000 28867000 16649000 15804000 16984000 14977000 16402000 11386000 18819000 1271100 23181000 23099000 28741000 17298000 16703000 17243000 14661000 15840000 3 3 1 3 3 3 3 3 3 3 3 13241000 21152000 7141.4 24489000 12110000 10537000 10915000 15212000 15538000 14249000 17806000 12328000 19749000 963930 24538000 11574000 11700000 11277000 15201000 15686000 13956000 17106000 5 5 1 5 5 5 5 5 5 5 5 2196600000 1285600000 910950000 7639 1337 7119 40733;40734;40735;40736;40737;40738;40739;40740;40741;40742;40743 48925;48926;48927;48928;48929;48930;48931;48932;48933;48934;48935;48936;48937;48938 48935 14 GVLMYGPPGCGK Oxidation (M) 1250.5788 0.57876417 1032 P43686;P43686-2 PSMC4 26S protease regulatory subunit 6B yes no 0 0 1 0 By MS/MS By MS/MS 8 0 5 3 2 47.057 47.077 2;3 7.5506E-06 12981 20211116_3436_TMUAki_TMT10x_P_F8 105.57 90.901 1184800 1915500 0 2244400 3169100 3356500 1544800 1980500 2125300 1600100 1772900 1103100 1788600 111040 2283000 2996900 3319900 1669800 2071700 2124200 1578400 1721200 1 1 0 1 1 1 1 1 1 1 1 1184800 1915500 0 2244400 3169100 3356500 1544800 1980500 2125300 1600100 1772900 1103100 1788600 111040 2283000 2996900 3319900 1669800 2071700 2124200 1578400 1721200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 181500000 118180000 63328000 7640 1032 7120 40744;40745;40746;40747;40748 48939;48940;48941;48942 48940 1332 4 GVLMYGPPGTGK Oxidation (M) 1191.5958 0.59579444 711 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 1 0 By MS/MS By MS/MS 8 0 2 1 1 48.296 48.302 2 1.6614E-07 13430 20211116_3436_TMUAki_TMT10x_P_F8 116.73 100.59 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7641 711 7121 40749;40750 48943;48944 48943 798 2 GVLNVHPAASASKPSADQIR Unmodified 2017.0705 0.070486187 2344 Q92576;Q92576-2 PHF3 PHD finger protein 3 yes no 0 0 0 1 By MS/MS 1 0 1 1 37.417 37.417 4 0.00044778 8942 20211116_3428_TMUAki_TMT10x_P_F1 62.966 44.37 313780 467200 24143 623440 897800 862770 432620 487330 484390 401570 439390 292340 436530 56694 628550 850620 855740 464750 511860 488920 395730 425250 1 1 1 1 1 1 1 1 1 1 1 313780 467200 24143 623440 897800 862770 432620 487330 484390 401570 439390 292340 436530 56694 628550 850620 855740 464750 511860 488920 395730 425250 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 71198000 71198000 0 7642 2344 7122 40751 48945 48945 1 GVLSAFNFGTVPSNN Unmodified 1522.7416 0.74160705 189 O15397;O15397-2 IPO8 Importin-8 yes no 0 0 0 0 By MS/MS 2 0 1 1 79.712 79.694 2 4.6301E-06 26343 20211116_3440_TMUAki_TMT10x_S_F2 93.258 77.367 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7643 189 7123 40752 48946 48946 1 GVMLAVDAVIAELKK Oxidation (M) 1571.8957 0.89566485 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 1 1 By MS/MS By MS/MS 3.75 3.07 3 2 1 2 4 4 80.404 80.398 3 4.6002E-07 26294 20211116_3440_TMUAki_TMT10x_S_F2 115.91 95.247 79154000 131190000 328490 104150000 87048000 135290000 100690000 95950000 112740000 111140000 100570000 73694000 122310000 5907300 108620000 83759000 135020000 101790000 99995000 113740000 107920000 97391000 13 13 5 13 13 13 13 13 13 13 13 36907000 58403000 38167 48508000 35799000 75553000 43242000 42727000 51651000 50953000 44481000 34358000 54459000 2216700 50589000 34459000 74563000 43733000 45344000 51924000 49424000 43131000 6 6 1 6 6 6 6 6 6 6 6 42246000 72783000 290320 55639000 51249000 59734000 57448000 53223000 61090000 60191000 56087000 39336000 67850000 3690600 58033000 49300000 60454000 58060000 54651000 61812000 58499000 54260000 7 7 4 7 7 7 7 7 7 7 7 9235200000 5338100000 3897100000 7644 613 7124 40753;40754;40755;40756;40757;40758;40759;40760 48947;48948;48949;48950;48951;48952;48953;48954;48955;48956;48957;48958;48959 48955 604 13 GVMLAVDAVIAELKK Unmodified 1555.9008 0.90075023 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 1 By MS/MS 2 0 1 1 81.203 81.189 3 1.3524E-19 26965 20211116_3440_TMUAki_TMT10x_S_F2 173.36 149.63 7942100 12440000 5993.6 10820000 8160300 6496600 9645500 3043900 2629200 4075800 7580300 7394800 11602000 650080 11088000 7861100 6807400 9489000 3299900 3157500 3938200 7159200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7942100 12440000 5993.6 10820000 8160300 6496600 9645500 3043900 2629200 4075800 7580300 7394800 11602000 650080 11088000 7861100 6807400 9489000 3299900 3157500 3938200 7159200 2 2 1 2 2 2 2 2 2 2 2 3951800000 0 3951800000 7645 613 7124 40761 48960;48961 48960 2 GVNAIVYMIDAADREK Unmodified 1763.8876 0.88761936 2974 Q9NVJ2;Q9NVJ2-2 ARL8B ADP-ribosylation factor-like protein 8B yes no 0 0 0 1 By MS/MS 6 0 1 1 77.061 77.03 3 0.0031221 24897 20211116_3445_TMUAki_TMT10x_S_F6 64.537 46.399 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7646 2974 7125 40762 48962 48962 1 GVNCIDYYSGGDKPYLISGADDR Unmodified 2534.1384 0.13836733 936 P35606;P35606-2 COPB2 Coatomer subunit beta' yes no 0 0 0 1 By MS/MS 5.5 0.5 1 1 2 60.249 60.293 3 3.4933E-15 17663 20211116_3434_TMUAki_TMT10x_P_F6 124 116.29 11000000 19781000 119350 20231000 14680000 25402000 15409000 13016000 11676000 13386000 14497000 10243000 18459000 1029300 20685000 14098000 25281000 15476000 13870000 12142000 13058000 13898000 3 3 2 3 3 3 3 3 3 3 3 11000000 19781000 119350 20231000 14680000 25402000 15409000 13016000 11676000 13386000 14497000 10243000 18459000 1029300 20685000 14098000 25281000 15476000 13870000 12142000 13058000 13898000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 647700000 647700000 0 7647 936 7126 40763;40764 48963;48964;48965;48966 48965 4 GVNIGGAGSYIYEKPLAEGPQVTGPIEVPAAR Unmodified 3209.6721 0.67207751 1193 P52943;P52943-2 CRIP2 Cysteine-rich protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 71.776 71.902 4 3.9117E-36 22542 20211116_3447_TMUAki_TMT10x_S_F8 176.84 161.32 13116000 22549000 102790 19330000 18651000 19619000 18181000 15034000 14342000 15706000 16963000 12212000 21028000 1123300 19952000 17869000 19866000 18347000 15537000 14852000 15311000 16282000 5 5 2 5 5 5 5 5 5 5 5 2449800 3723300 57781 3548100 2307400 5322200 3221600 2544100 2552800 2854000 3068300 2281400 3473600 254960 3658500 2238900 5250100 3199300 2736200 2644600 2774600 2943900 1 1 1 1 1 1 1 1 1 1 1 10666000 18825000 45010 15782000 16343000 14297000 14959000 12490000 11790000 12852000 13894000 9930800 17555000 868330 16293000 15630000 14616000 15148000 12801000 12207000 12537000 13338000 4 4 1 4 4 4 4 4 4 4 4 5524400000 1651200000 3873200000 7648 1193 7127 40765;40766;40767 48967;48968;48969;48970;48971 48970 5 GVNLPGAAVDLPAVSEK Unmodified 1635.8832 0.88318591 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 By MS/MS By MS/MS 6.12 1.05 3 4 6 13 16 10 54.152 54.271 2;3 1.0951E-42 21646 20211116_3433_TMUAki_TMT10x_P_F5 222.56 199.92 163570000 269750000 1096000 300690000 182380000 212420000 168670000 129930000 144810000 149600000 191340000 152290000 251820000 13411000 303240000 174500000 219990000 171070000 136850000 150020000 145300000 183140000 28 28 15 28 28 28 28 28 28 28 28 83564000 133740000 683820 155360000 104810000 150650000 101920000 64763000 70940000 76149000 97338000 77802000 124880000 6717700 156890000 100390000 151830000 102570000 70521000 74461000 73902000 93081000 13 13 7 13 13 13 13 13 13 13 13 80003000 136000000 412170 145330000 77572000 61775000 66757000 65162000 73873000 73455000 94004000 74492000 126940000 6692900 146350000 74114000 68162000 68500000 66330000 75556000 71398000 90059000 15 15 8 15 15 15 15 15 15 15 15 41923000000 21473000000 20450000000 7649 670;671 7128 40768;40769;40770;40771;40772;40773;40774;40775;40776;40777;40778;40779;40780;40781;40782;40783;40784;40785;40786;40787;40788;40789;40790;40791;40792;40793 48972;48973;48974;48975;48976;48977;48978;48979;48980;48981;48982;48983;48984;48985;48986;48987;48988;48989;48990;48991;48992;48993;48994;48995;48996;48997;48998;48999;49000;49001;49002;49003;49004;49005 48974 34 GVNLPGAAVDLPAVSEKDIQDLK Unmodified 2348.2587 0.25874047 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 1 By MS/MS By MS/MS 5.88 1.28 3 4 4 4 2 9 8 75.706 75.725 3;4 3.5024E-57 24359 20211116_3445_TMUAki_TMT10x_S_F6 233.5 209.27 48716000 112160000 437630 48914000 115700000 219410000 107780000 231360000 188040000 201150000 140060000 45360000 104420000 4752200 56917000 110740000 213280000 112230000 233720000 186080000 197700000 136600000 26 26 11 26 26 26 26 26 26 26 26 24676000 50046000 120060 25542000 38048000 122290000 61303000 97656000 81359000 84239000 59829000 22974000 46606000 2071600 29235000 37056000 118060000 61587000 100130000 81127000 82825000 58381000 13 13 3 13 13 13 13 13 13 13 13 24040000 62111000 317570 23372000 77649000 97126000 46479000 133700000 106680000 116910000 80235000 22386000 57811000 2680600 27682000 73688000 95218000 50639000 133590000 104950000 114880000 78218000 13 13 8 13 13 13 13 13 13 13 13 20931000000 10918000000 10014000000 7650 670;671 7129 40794;40795;40796;40797;40798;40799;40800;40801;40802;40803;40804;40805;40806;40807;40808;40809;40810 49006;49007;49008;49009;49010;49011;49012;49013;49014;49015;49016;49017;49018;49019;49020;49021;49022;49023;49024;49025;49026;49027;49028;49029;49030;49031 49026 26 GVNTGAVGSYIYDRDPEGK Unmodified 1996.949 0.94903365 1193 P52943;P52943-2 CRIP2 Cysteine-rich protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 49.595 49.772 3 6.937E-51 14495 20211116_3433_TMUAki_TMT10x_P_F5 232.29 212.24 15246000 26805000 225000 31908000 21527000 24497000 16149000 22204000 23886000 20699000 21813000 14196000 25031000 1386200 32081000 20508000 25362000 16901000 22646000 23888000 20278000 21106000 4 4 2 4 4 4 4 4 4 4 4 7516100 12724000 0 14843000 14968000 18078000 11450000 10931000 11297000 10385000 9943700 6996800 11881000 552040 15041000 14253000 18056000 11793000 11458000 11452000 10165000 9634200 2 2 0 2 2 2 2 2 2 2 2 7729700 14081000 225000 17065000 6558500 6419300 4699500 11273000 12589000 10314000 11869000 7198800 13150000 834130 17039000 6255400 7305300 5108300 11188000 12436000 10113000 11472000 2 2 2 2 2 2 2 2 2 2 2 2598400000 1440300000 1158000000 7651 1193 7130 40811;40812;40813 49032;49033;49034;49035 49032 4 GVNWAAFHPTMPLIVSGADDR Unmodified 2253.1001 0.10007176 1207 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 74.606 74.514 3 0.0023714 23947 20211116_3428_TMUAki_TMT10x_P_F1 60.032 47.866 1789700 3139700 0 2798600 2134500 1971100 2346100 1715500 1666300 1659000 2202700 1666400 2928400 152300 2866700 2051900 2053300 2347600 1755400 1743900 1622600 2108200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1789700 3139700 0 2798600 2134500 1971100 2346100 1715500 1666300 1659000 2202700 1666400 2928400 152300 2866700 2051900 2053300 2347600 1755400 1743900 1622600 2108200 1 1 0 1 1 1 1 1 1 1 1 222560000 0 222560000 7652 1207 7131 40814;40815 49036;49037 49036 2 GVPAFFR Unmodified 792.42826 0.42825883 2772 Q9H0D6 XRN2 5'-3' exoribonuclease 2 yes yes 0 0 0 0 By MS/MS 2 0 1 1 53.109 52.926 2 0.0083467 15498 20211116_3440_TMUAki_TMT10x_S_F2 102.12 75.06 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7653 2772 7132 40816 49038 49038 1 GVPGAIVNVSSQCSQR Unmodified 1657.8206 0.82060243 2084 Q7Z4W1 DCXR L-xylulose reductase yes yes 0 0 0 0 By MS/MS 4.5 3.5 1 1 2 43.656 43.562 3 7.1089E-06 13490 20211116_3439_TMUAki_TMT10x_S_F1 98.682 86.517 1763600 3131800 7805.3 3352400 1468100 1361800 1429200 2412000 2310900 2120200 2651800 1641900 2923200 123920 3374600 1405500 1533700 1479100 2390600 2324500 2082700 2547600 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1763600 3131800 7805.3 3352400 1468100 1361800 1429200 2412000 2310900 2120200 2651800 1641900 2923200 123920 3374600 1405500 1533700 1479100 2390600 2324500 2082700 2547600 3 3 1 3 3 3 3 3 3 3 3 169180000 0 169180000 7654 2084 7133 40817;40818 49039;49040;49041 49039 3 GVPHPEDDHSQVEGPESLR Unmodified 2083.9559 0.95590994 2002 Q6P996;Q6P996-3;Q6P996-4;Q6P996-5 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 33.363 33.25 4 4.7385E-25 10296 20211116_3441_TMUAki_TMT10x_S_F3 179.1 162.79 363820 588960 70.073 690900 950080 790580 472020 603300 660080 442350 619230 338700 549950 32164 699130 898560 795040 509600 618030 661840 438650 598610 3 3 1 3 3 3 3 3 3 3 3 261560 409530 0 493080 850540 694660 370410 454910 487260 315330 446330 243490 382440 23660 500130 803060 689850 404440 470440 489140 313710 431830 2 2 0 2 2 2 2 2 2 2 2 102260 179440 70.073 197830 99534 95922 101610 148390 172820 127020 172890 95211 167500 8504.9 198990 95495 105180 105160 147590 172700 124940 166780 1 1 1 1 1 1 1 1 1 1 1 189910000 131330000 58584000 7655 2002 7134 40819;40820;40821;40822 49042;49043;49044 49044 3 GVPIRLEVGPR Unmodified 1191.7088 0.70879078 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 43.532 43.472 3 5.2919E-15 11357 20211116_3428_TMUAki_TMT10x_P_F1 194.52 172.48 2855500 4456500 46846 4748900 4338300 3862900 2679000 4540400 4215500 3331300 3941800 2659000 4159500 291510 4810700 4120300 4005100 2851800 4546000 4211600 3303400 3811000 3 3 2 3 3 3 3 3 3 3 3 883350 1377100 34597 1522400 2093700 2293000 1198100 1679200 1518900 1075400 1284000 822740 1285500 122430 1554300 1987200 2274600 1272100 1720200 1522800 1075100 1245900 1 1 1 1 1 1 1 1 1 1 1 1972200 3079300 12249 3226500 2244600 1569900 1480900 2861200 2696600 2256000 2657800 1836300 2873900 169080 3256400 2133100 1730500 1579700 2825800 2688700 2228200 2565100 2 2 1 2 2 2 2 2 2 2 2 282970000 191720000 91242000 7656 542 7135 40823;40824;40825 49045;49046;49047 49045 3 GVPPPPTVR Unmodified 918.5287 0.52870115 1538 Q07666;Q07666-2;Q07666-3 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 33.136 33.313 2 0.0047636 8304 20211116_3433_TMUAki_TMT10x_P_F5 75.109 26.606 699010 995440 0 1081000 598150 467010 614340 440490 421700 434690 726800 650680 929170 35415 1087600 572570 513040 616340 449030 448260 424780 691670 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 699010 995440 0 1081000 598150 467010 614340 440490 421700 434690 726800 650680 929170 35415 1087600 572570 513040 616340 449030 448260 424780 691670 1 1 0 1 1 1 1 1 1 1 1 14816000 0 14816000 7657 1538 7136 40826;40827 49048;49049 49048 2 GVPQQIEVAR Unmodified 1095.6037 0.60365701 2494 Q96I24 FUBP3 Far upstream element-binding protein 3 yes yes 0 0 0 0 By MS/MS By matching 4.5 0.5 1 1 1 1 37.414 37.511 2 0.0010012 9434 20211116_3431_TMUAki_TMT10x_P_F4 96.342 67.24 1559200 2293700 20668 2940700 4694400 4067800 2191300 2160000 2318600 1687700 2322200 1451900 2142700 192440 2971200 4439600 4031600 2357500 2278300 2353400 1667800 2240100 1 1 1 1 1 1 1 1 1 1 1 1559200 2293700 20668 2940700 4694400 4067800 2191300 2160000 2318600 1687700 2322200 1451900 2142700 192440 2971200 4439600 4031600 2357500 2278300 2353400 1667800 2240100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 76924000 64951000 11973000 7658 2494 7137 40828;40829 49050 49050 1 GVPSLMPCQGFCLNVVR Oxidation (M) 1948.9321 0.93214349 2180 Q8N158 GPC2 Glypican-2;Secreted glypican-2 yes yes 0 0 1 0 By MS/MS 3 0 1 1 68.894 68.437 3 0.032042 24673 20211116_3441_TMUAki_TMT10x_S_F3 43.914 25.549 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7659 2180 7138 40830 49051 49051 2619 1 GVPTGFILPIR Unmodified 1168.6968 0.69682911 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 71.061 70.867 2 7.8589E-11 23316 20211116_3442_TMUAki_TMT10x_S_F4 162.49 141.8 36601000 61629000 156010 56099000 41243000 51688000 42863000 39033000 37769000 39301000 45093000 34079000 57486000 3146200 57555000 39589000 52644000 43235000 40332000 38906000 38373000 43272000 6 6 4 6 6 6 6 6 6 6 6 16107000 26002000 107360 23863000 17584000 29815000 20175000 16766000 16290000 16907000 18585000 14997000 24255000 1375800 24584000 16927000 29713000 20208000 17710000 16824000 16507000 17857000 3 3 2 3 3 3 3 3 3 3 3 20494000 35627000 48654 32236000 23658000 21873000 22688000 22266000 21479000 22394000 26507000 19083000 33231000 1770500 32970000 22662000 22931000 23027000 22623000 22082000 21866000 25415000 3 3 2 3 3 3 3 3 3 3 3 12235000000 5614100000 6620500000 7660 629 7139 40831;40832;40833;40834;40835;40836 49052;49053;49054;49055;49056;49057 49057 6 GVPVISVK Unmodified 797.50109 0.50108942 1804 Q15424;Q15424-3;Q15424-2;Q15424-4 SAFB Scaffold attachment factor B1 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 49.871 49.802 2 0.002116 13555 20211116_3447_TMUAki_TMT10x_S_F8 113.5 81.564 16755000 27881000 146170 27618000 20717000 19984000 18949000 18327000 19498000 17920000 21891000 15601000 26015000 1564100 28080000 19827000 20792000 19331000 18705000 19897000 17518000 21044000 3 3 2 3 3 3 3 3 3 3 3 3500300 5518100 13140 5844500 6170800 7128600 4177100 3792000 4532300 3584900 4317600 3259200 5150200 339850 5958500 5867500 7108000 4352300 4017600 4587700 3509700 4171600 1 1 1 1 1 1 1 1 1 1 1 13255000 22363000 133030 21774000 14546000 12856000 14772000 14535000 14966000 14335000 17574000 12342000 20865000 1224300 22121000 13960000 13684000 14978000 14687000 15309000 14008000 16872000 2 2 1 2 2 2 2 2 2 2 2 742870000 486880000 255990000 7661 1804 7140 40837;40838;40839;40840 49058;49059;49060 49060 3 GVQDIVVGEGTHFLIPWVQKPIIFDCR Unmodified 3122.6375 0.63754668 924 P35232;P35232-2 PHB Prohibitin yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 79.331 79.282 4 1.2632E-08 27950 20211116_3430_TMUAki_TMT10x_P_F3 89.055 82.691 8900100 13745000 0 12471000 9020900 11834000 11365000 5498500 5173600 6292700 8838600 8285100 12821000 517430 12802000 8694100 11953000 11214000 5934000 5664200 6113100 8412800 2 2 0 2 2 2 2 2 2 2 2 5518000 8894500 0 7385500 5277100 8767900 7131000 3072100 2623600 3607300 5513200 5137200 8293900 379080 7661700 5101700 8718900 6996800 3427000 2968900 3501000 5228900 1 1 0 1 1 1 1 1 1 1 1 3382100 4850300 0 5085000 3743800 3066400 4234000 2426400 2550000 2685500 3325400 3147900 4526700 138350 5140800 3592400 3234000 4216900 2507000 2695400 2612100 3183900 1 1 0 1 1 1 1 1 1 1 1 2139300000 1136400000 1002900000 7662 924 7141 40841;40842 49061;49062 49061 2 GVQTLVIGR Unmodified 941.56581 0.56581494 2825 Q9H7C9;Q9H7C9-3;Q9H7C9-2 AAMDC Mth938 domain-containing protein yes no 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 44.434 44.589 2 3.0695E-05 13884 20211116_3439_TMUAki_TMT10x_S_F1 108.81 48.689 2165900 3065000 0 3371300 3907600 4257400 2439200 2235900 2252200 1919000 2522600 2016300 2861100 163920 3430900 3707300 4237000 2545200 2365800 2309000 1887300 2425100 1 1 0 1 1 1 1 1 1 1 1 2165900 3065000 0 3371300 3907600 4257400 2439200 2235900 2252200 1919000 2522600 2016300 2861100 163920 3430900 3707300 4237000 2545200 2365800 2309000 1887300 2425100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 64947000 64947000 0 7663 2825 7142 40843;40844;40845 49063;49064;49065 49064 3 GVQVETISPGDGR Unmodified 1313.6575 0.65754307 1386 P62942 FKBP1A Peptidyl-prolyl cis-trans isomerase FKBP1A yes yes 0 0 0 0 By MS/MS By MS/MS 2.75 0.829 4 2 2 3 5 38.515 38.431 2;3 3.6193E-25 12474 20211116_3441_TMUAki_TMT10x_S_F3 225.17 186.15 7385100 11484000 88362 13481000 11930000 9537400 7749900 10206000 8533200 8030600 11126000 6876600 10723000 712160 13553000 11336000 9974300 8103900 10278000 8738800 7932700 10652000 12 12 5 12 12 12 12 12 12 12 12 2822800 4148800 11354 5052600 7196600 6098300 3745000 3331800 2887700 2498900 4069300 2628200 3874700 282850 5106300 6812800 6085900 3952700 3502300 3017200 2474800 3888900 4 4 1 4 4 4 4 4 4 4 4 4562300 7335200 77009 8428100 4733400 3439100 4004900 6874200 5645500 5531700 7056300 4248300 6848600 429320 8446300 4523400 3888500 4151200 6775700 5721600 5457900 6763300 8 8 4 8 8 8 8 8 8 8 8 729960000 339050000 390910000 7664 1386 7143 40846;40847;40848;40849;40850;40851;40852;40853 49066;49067;49068;49069;49070;49071;49072;49073;49074;49075;49076;49077 49074 12 GVQVLPR Unmodified 767.46537 0.46537261 2913 Q9NQX3;Q9NQX3-2 GPHN Gephyrin;Molybdopterin adenylyltransferase;Molybdopterin molybdenumtransferase yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 33.505 33.696 2 0.024422 8947 20211116_3435_TMUAki_TMT10x_P_F7 83.287 51.984 360960 554400 11250 593290 533450 593180 402280 255830 286710 300390 439420 336180 517460 42827 602510 508880 596720 411330 278470 302150 291540 419170 2 2 2 2 2 2 2 2 2 2 2 360960 554400 11250 593290 533450 593180 402280 255830 286710 300390 439420 336180 517460 42827 602510 508880 596720 411330 278470 302150 291540 419170 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30795000 30795000 0 7665 2913 7144 40854;40855 49078;49079 49079 2 GVSGSCNIDVVCPEGDGR Unmodified 1876.8044 0.80436002 43 CON__P15636 yes yes 0 0 0 0 By MS/MS 3 0 1 1 43.61 43.656 3 0.009078 13430 20211116_3430_TMUAki_TMT10x_P_F3 48.919 43.259 + 385200 617640 11968 756890 859000 927030 544180 450900 546660 459020 564170 358750 576850 49726 764860 816460 923200 568520 482720 556650 447970 543700 1 1 1 1 1 1 1 1 1 1 1 385200 617640 11968 756890 859000 927030 544180 450900 546660 459020 564170 358750 576850 49726 764860 816460 923200 568520 482720 556650 447970 543700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28503000 28503000 0 7666 43 7145 40856 49080 49080 1 GVSGSCNIDVVCPEGDGRR Unmodified 2032.9055 0.90547105 43 CON__P15636 yes yes 0 0 0 1 By MS/MS By MS/MS 3 1.22 2 2 3 4 1 5 7 35.149 35.141 3 1.0999E-90 8744 20211116_3428_TMUAki_TMT10x_P_F1 326.18 289 + 3719200 5522600 56047 8162800 10448000 8514700 4413800 6759200 8938300 5313800 7857400 3462900 5163100 397830 8146200 9866100 8613000 4932700 6917600 8856900 5249300 7613200 16 16 9 16 16 16 16 16 16 16 16 1652100 2377700 6859 3443400 9094400 7201000 3299000 3070600 3849400 2295700 3420500 1537900 2222600 197470 3493800 8571600 7011300 3666400 3307200 3876800 2274000 3312900 6 6 2 6 6 6 6 6 6 6 6 2067100 3145000 49188 4719400 1353500 1313700 1114900 3688600 5089000 3018100 4436900 1925000 2940500 200360 4652400 1294500 1601700 1266400 3610400 4980100 2975300 4300300 10 10 7 10 10 10 10 10 10 10 10 4199200000 3288800000 910400000 7667 43 7146 40857;40858;40859;40860;40861;40862;40863;40864;40865;40866;40867;40868 49081;49082;49083;49084;49085;49086;49087;49088;49089;49090;49091;49092;49093;49094;49095;49096;49097;49098 49081 18 GVSPEPIHLK Unmodified 1075.6026 0.60259438 87 O00429;O00429-2;O00429-4;O00429-3;O00429-5;O00429-9;O00429-8;O00429-6 DNM1L Dynamin-1-like protein yes no 0 0 0 0 By MS/MS By MS/MS 5 0.894 2 1 2 2 3 40.035 40.136 3 0.00011524 9738 20211116_3444_TMUAki_TMT10x_S_F5 113.93 84.579 4171300 6700200 38499 7508300 5893600 4919500 4435100 5248900 5360800 4421100 6135600 3884000 6255100 391590 7564000 5615800 5178700 4603700 5295300 5440600 4352000 5894800 6 6 5 6 6 6 6 6 6 6 6 995650 1646100 15244 1733700 2740900 2211400 1344400 1323500 1274800 1067300 1405000 927170 1536300 121200 1769600 2593900 2203400 1434600 1382700 1304600 1052900 1351300 1 1 1 1 1 1 1 1 1 1 1 3175600 5054100 23255 5774700 3152800 2708100 3090700 3925500 4086000 3353800 4730600 2956900 4718700 270390 5794400 3022000 2975300 3169100 3912600 4136100 3299100 4543500 5 5 4 5 5 5 5 5 5 5 5 289780000 117910000 171870000 7668 87 7147 40869;40870;40871;40872;40873 49099;49100;49101;49102;49103;49104;49105;49106 49102 8 GVSQTGTPVCEEDGDAGLGIR Unmodified 2116.9695 0.96951109 1573 Q12888;Q12888-3;Q12888-2 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 47.109 46.933 3 6.4492E-14 15872 20211116_3441_TMUAki_TMT10x_S_F3 126.26 101.33 1736900 2773300 42534 3036900 2339900 2639800 1843100 3099100 3039500 2405000 2702700 1617400 2588800 180920 3073600 2233000 2724100 1932500 3107000 3027900 2377400 2617600 2 2 1 2 2 2 2 2 2 2 2 625010 1014000 0 1248800 1397400 1745200 924450 1139100 1329000 877050 1027700 581860 947050 51467 1264900 1327300 1733600 974970 1180900 1323600 867360 1000700 1 1 0 1 1 1 1 1 1 1 1 1111900 1759300 42534 1788100 942460 894630 918600 1960000 1710500 1527900 1675000 1035600 1641700 129450 1808800 905650 990440 957540 1926100 1704300 1510100 1616900 1 1 1 1 1 1 1 1 1 1 1 112210000 55897000 56310000 7669 1573 7148 40874;40875;40876 49107;49108;49109 49109 3 GVSSQETAGIGASAHLVNFK Unmodified 1972.0014 0.0014035686 1031 P43490 NAMPT Nicotinamide phosphoribosyltransferase yes yes 0 0 0 0 By MS/MS By MS/MS 7.25 0.433 3 1 1 3 52.55 52.922 3 9.2203E-23 17074 20211116_3446_TMUAki_TMT10x_S_F7 148.26 127.31 4015100 6451800 28872 7453300 7002500 10932000 5271100 5141200 5810500 5203900 5555200 3738100 6023900 330950 7584800 6668000 10792000 5453900 5521400 5878600 5079800 5366800 2 2 1 2 2 2 2 2 2 2 2 4015100 6451800 28872 7453300 7002500 10932000 5271100 5141200 5810500 5203900 5555200 3738100 6023900 330950 7584800 6668000 10792000 5453900 5521400 5878600 5079800 5366800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1917000000 896670000 1020300000 7670 1031 7149 40877;40878;40879;40880 49110;49111;49112 49112 3 GVSTLCEEHVEPETTLPAR Unmodified 2124.0157 0.015733004 1873 Q1ED39 KNOP1 Lysine-rich nucleolar protein 1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 43.413 43.087 3 7.1646E-24 14319 20211116_3441_TMUAki_TMT10x_S_F3 165.16 156.36 378160 647760 8443.9 846930 355540 335650 268450 596440 695220 540240 720230 352170 605180 38905 842290 339230 379330 290060 591580 689480 529940 694000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 378160 647760 8443.9 846930 355540 335650 268450 596440 695220 540240 720230 352170 605180 38905 842290 339230 379330 290060 591580 689480 529940 694000 1 1 1 1 1 1 1 1 1 1 1 69829000 0 69829000 7671 1873 7150 40881 49113 49113 1 GVTECYECHPKPTQR Unmodified 1860.8247 0.82470153 3087 Q9UBT2;Q9UBT2-2 UBA2 SUMO-activating enzyme subunit 2 yes no 0 0 0 1 By MS/MS 4.67 0.471 1 2 3 29.783 29.751 3;4 1.7271E-43 6581 20211116_3433_TMUAki_TMT10x_P_F5 258.91 237.68 530740 774360 4067.8 929430 1803400 1136600 700840 547120 589850 462550 754240 494180 723140 62803 940310 1701500 1131900 765110 583490 610760 455240 722490 3 3 1 3 3 3 3 3 3 3 3 530740 774360 4067.8 929430 1803400 1136600 700840 547120 589850 462550 754240 494180 723140 62803 940310 1701500 1131900 765110 583490 610760 455240 722490 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 196050000 196050000 0 7672 3087 7151 40882;40883;40884 49114;49115;49116 49115 3 GVTFLFPIQAK Unmodified 1219.6965 0.69649476 2918 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 0 By MS/MS By MS/MS 4.4 0.49 3 2 2 3 77.622 77.624 2;3 1.2308E-15 24850 20211116_3444_TMUAki_TMT10x_S_F5 201.58 167.5 29388000 50460000 37545 43120000 36117000 54017000 35030000 36224000 35038000 36390000 38299000 27360000 47057000 2140100 44671000 34578000 53957000 35589000 37733000 35760000 35533000 36845000 4 4 1 4 4 4 4 4 4 4 4 16947000 27654000 0 23576000 19913000 39495000 21235000 21382000 20512000 21883000 22108000 15776000 25789000 1036200 24578000 19100000 38846000 21448000 22669000 20956000 21351000 21277000 2 2 0 2 2 2 2 2 2 2 2 12441000 22806000 37545 19544000 16204000 14522000 13795000 14842000 14526000 14507000 16191000 11584000 21268000 1103900 20093000 15478000 15111000 14141000 15064000 14805000 14182000 15568000 2 2 1 2 2 2 2 2 2 2 2 5080700000 2561100000 2519600000 7673 2918 7152 40885;40886;40887;40888;40889 49117;49118;49119;49120 49120 4 GVTFNVTTVDTK Unmodified 1280.6612 0.66123147 80 O00299 CLIC1 Chloride intracellular channel protein 1 yes yes 0 0 0 0 By MS/MS 6 0 1 1 54.957 55.044 2 9.9934E-17 15526 20211116_3434_TMUAki_TMT10x_P_F6 212.09 157.54 1601700 2405800 0 3230600 3267100 3004000 1827600 1585200 1541400 1383400 2025600 1491200 2248000 136930 3234100 3095200 3042400 1920200 1677300 1597800 1359400 1939000 1 1 0 1 1 1 1 1 1 1 1 1601700 2405800 0 3230600 3267100 3004000 1827600 1585200 1541400 1383400 2025600 1491200 2248000 136930 3234100 3095200 3042400 1920200 1677300 1597800 1359400 1939000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 326010000 326010000 0 7674 80 7153 40890 49121 49121 1 GVTHNIALLR Unmodified 1092.6404 0.64037687 503 P05165;P05165-3;P05165-2 PCCA Propionyl-CoA carboxylase alpha chain, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 36.883 36.853 3 0.00070449 8713 20211116_3428_TMUAki_TMT10x_P_F1 82.831 63.353 1036400 1577900 2850.5 1761400 1540900 1419200 1127800 1250000 1252600 1114200 1382100 964980 1473100 94973 1778800 1467200 1463100 1169500 1275400 1273400 1093700 1329300 2 2 1 2 2 2 2 2 2 2 2 494560 761300 2850.5 846690 1114300 1030900 622620 631210 645070 558170 621830 460500 710690 52339 860490 1056300 1029900 657950 659760 654440 548150 600580 1 1 1 1 1 1 1 1 1 1 1 541810 816640 0 914690 426550 388330 505230 618770 607530 556000 760270 504480 762370 42634 918340 410930 433250 511530 615610 619000 545600 728670 1 1 0 1 1 1 1 1 1 1 1 55344000 28402000 26942000 7675 503 7154 40891;40892 49122;49123 49122 2 GVTIASGGVLPNIHPELLAK Unmodified 1985.131 0.13096118 327 O75367;O75367-2;O75367-3 H2AFY Core histone macro-H2A.1 yes no 0 0 0 0 By MS/MS By MS/MS 4.14 3.09 4 4 2 4 7 7 69.928 69.879 3;4 2.0203E-41 22432 20211116_3440_TMUAki_TMT10x_S_F2 202.96 189.29 157960000 259620000 1942200 253480000 172890000 231960000 179120000 167660000 163670000 169740000 190200000 147080000 242230000 14022000 258700000 165980000 236180000 180890000 173770000 168120000 165690000 182660000 32 32 21 32 32 32 32 32 32 32 32 76203000 119780000 1009900 120070000 70266000 139430000 85617000 80286000 77756000 80420000 87431000 70957000 111770000 6730300 122760000 67792000 139520000 85799000 84618000 79790000 78537000 84042000 15 15 10 15 15 15 15 15 15 15 15 81754000 139840000 932270 133410000 102630000 92522000 93506000 87371000 85910000 89318000 102770000 76123000 130470000 7291600 135940000 98190000 96661000 95089000 89151000 88330000 87152000 98619000 17 17 11 17 17 17 17 17 17 17 17 52206000000 29546000000 22660000000 7676 327 7155 40893;40894;40895;40896;40897;40898;40899;40900;40901;40902;40903;40904;40905;40906 49124;49125;49126;49127;49128;49129;49130;49131;49132;49133;49134;49135;49136;49137;49138;49139;49140;49141;49142;49143;49144;49145;49146;49147;49148;49149;49150;49151;49152;49153;49154;49155 49147 32 GVTIASGGVLPR Unmodified 1125.6506 0.6506072 3051 Q9P0M6 H2AFY2 Core histone macro-H2A.2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 47.226 47.368 2 1.7348E-19 14902 20211116_3439_TMUAki_TMT10x_S_F1 229.17 203.09 25830000 41410000 248110 44544000 39547000 43044000 28030000 34769000 35527000 30987000 36599000 24051000 38652000 2512000 45199000 37641000 43757000 29267000 35655000 35852000 30419000 35273000 8 8 5 8 8 8 8 8 8 8 8 15948000 24908000 192870 26113000 29765000 35162000 19377000 21319000 21668000 19055000 22194000 14851000 23246000 1660200 26689000 28288000 34951000 20269000 22307000 21962000 18703000 21394000 5 5 3 5 5 5 5 5 5 5 5 9881200 16503000 55242 18432000 9781500 7881800 8653600 13450000 13858000 11932000 14405000 9200600 15406000 851830 18509000 9352800 8805300 8997800 13349000 13890000 11716000 13879000 3 3 2 3 3 3 3 3 3 3 3 3952100000 1525100000 2427000000 7677 3051 7156 40907;40908;40909;40910;40911;40912 49156;49157;49158;49159;49160;49161;49162;49163 49161 8 GVTIIGPATVGGIKPGCFK Unmodified 1871.0339 0.033889671 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 1 By MS/MS By MS/MS 4 0.816 4 4 4 6 6 65.168 65.064 3;4 8.6602E-32 22309 20211116_3430_TMUAki_TMT10x_P_F3 194.58 175.26 157290000 252020000 1120700 251800000 178440000 218070000 169190000 184220000 170190000 186100000 193870000 146450000 235160000 13418000 256390000 170870000 223470000 172130000 189060000 173930000 181670000 186280000 22 22 11 22 22 22 22 22 22 22 22 71673000 113120000 350730 114930000 87104000 140050000 87785000 82281000 77814000 84539000 85780000 66734000 105560000 6083500 117500000 83531000 139830000 88700000 86641000 79881000 82472000 82502000 9 9 4 9 9 9 9 9 9 9 9 85615000 138900000 769990 136870000 91337000 78019000 81404000 101940000 92374000 101560000 108090000 79718000 129600000 7334800 138890000 87339000 83648000 83430000 102420000 94052000 99201000 103780000 13 13 7 13 13 13 13 13 13 13 13 24968000000 12879000000 12088000000 7678 1200 7157 40913;40914;40915;40916;40917;40918;40919;40920;40921;40922;40923;40924 49164;49165;49166;49167;49168;49169;49170;49171;49172;49173;49174;49175;49176;49177;49178;49179;49180;49181;49182;49183;49184;49185 49165 22 GVTIPYRPK Unmodified 1029.5971 0.59711507 1792 Q15366;Q15366-6;Q15366-3;Q15366-2;Q15366-4;Q15366-5;Q15366-7;Q15366-8 PCBP2 Poly(rC)-binding protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 39.454 39.3 3 9.7807E-05 12774 20211116_3441_TMUAki_TMT10x_S_F3 135.71 96.002 2870000 3869200 21405 6406900 3443900 2550500 2438300 1898600 2214400 1883700 3075600 2672300 3619900 254660 6299200 3277400 2821500 2518900 1962800 2293100 1840300 2940300 3 3 2 3 3 3 3 3 3 3 3 1199900 1520600 0 2570400 2347600 1594200 1043400 703860 845880 723930 1240800 1117100 1422800 104280 2533500 2217500 1664200 1120400 761170 883190 706200 1184700 1 1 0 1 1 1 1 1 1 1 1 1670100 2348700 21405 3836500 1096200 956380 1395000 1194700 1368500 1159700 1834800 1555200 2197100 150380 3765700 1059900 1157300 1398500 1201700 1409900 1134100 1755500 2 2 2 2 2 2 2 2 2 2 2 121570000 64826000 56745000 7679 1792 7158 40925;40926;40927 49186;49187;49188 49188 3 GVTIPYRPKPSSSPVIFAGGQDR Unmodified 2428.2863 0.28629262 1792 Q15366;Q15366-6;Q15366-3;Q15366-2 PCBP2 Poly(rC)-binding protein 2 yes no 0 0 0 2 By MS/MS By MS/MS 3.78 0.916 1 2 4 2 5 4 50.554 50.567 3;4 1.373E-45 13757 20211116_3444_TMUAki_TMT10x_S_F5 204.65 162.58 67356000 110440000 912140 128080000 81550000 99359000 72871000 44756000 55354000 53546000 74002000 62719000 103120000 6182600 128990000 78001000 101770000 73828000 48523000 57741000 51933000 70810000 12 12 6 12 12 12 12 12 12 12 12 42242000 69678000 864290 81532000 62682000 82651000 55840000 27594000 35166000 35551000 47801000 39337000 65061000 4501100 82356000 59977000 82893000 56358000 31072000 37128000 34393000 45721000 7 7 5 7 7 7 7 7 7 7 7 25115000 40765000 47852 46547000 18867000 16709000 17031000 17162000 20188000 17995000 26201000 23382000 38060000 1681600 46631000 18024000 18872000 17469000 17451000 20613000 17540000 25089000 5 5 1 5 5 5 5 5 5 5 5 21401000000 13132000000 8269100000 7680 1792 7159 40928;40929;40930;40931;40932;40933;40934;40935;40936 49189;49190;49191;49192;49193;49194;49195;49196;49197;49198;49199;49200;49201 49201 13 GVTLGFR Unmodified 748.42317 0.42317345 904 P32969 RPL9 60S ribosomal protein L9 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 2.87 2 2 1 1 4 2 44.52 44.545 2 0.0015929 11834 20211116_3436_TMUAki_TMT10x_P_F8 148.21 87.912 26272000 40987000 0 42639000 52249000 45704000 26787000 29364000 26755000 25809000 33443000 24459000 38251000 2136800 43428000 49432000 46004000 28501000 30574000 27457000 25353000 32054000 7 7 0 7 7 7 7 7 7 7 7 20636000 31954000 0 33161000 46828000 41705000 22449000 22882000 21017000 20334000 26239000 19212000 29821000 1770400 33872000 44268000 41536000 24001000 24139000 21629000 19964000 25150000 5 5 0 5 5 5 5 5 5 5 5 5636200 9033100 0 9478000 5421400 3998800 4337600 6482000 5737600 5474600 7203800 5247100 8430500 366400 9555800 5164700 4467500 4499800 6434900 5827700 5388300 6903900 2 2 0 2 2 2 2 2 2 2 2 2225000000 1766200000 458750000 7681 904 7160 40937;40938;40939;40940;40941;40942 49202;49203;49204;49205;49206;49207;49208 49206 7 GVTQFGNK Unmodified 849.43447 0.43446642 246 O43809 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 35.328 35.536 2 0.0051615 7633 20211116_3434_TMUAki_TMT10x_P_F6 96.027 49.601 483160 855170 0 856100 925380 1161800 689220 616860 695030 582760 683030 449820 797970 39919 877870 880950 1152400 711640 653660 706400 570560 659270 2 2 0 2 2 2 2 2 2 2 2 483160 855170 0 856100 925380 1161800 689220 616860 695030 582760 683030 449820 797970 39919 877870 880950 1152400 711640 653660 706400 570560 659270 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13462000 13462000 0 7682 246 7161 40943;40944 49209;49210 49209 2 GVTQYYAYVTER Unmodified 1448.6936 0.69359423 810 P26196 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 4 2 3 3 55.358 55.626 2;3 1.0535E-09 18101 20211116_3446_TMUAki_TMT10x_S_F7 159.12 136.99 36333000 62784000 165440 64431000 46027000 56302000 41000000 46213000 42675000 44805000 48193000 33828000 58590000 2990600 65493000 43997000 57631000 41903000 47454000 43537000 43817000 46320000 10 10 4 10 10 10 10 10 10 10 10 16648000 28696000 137080 29774000 25169000 37069000 22873000 21289000 19620000 20285000 21574000 15501000 26780000 1517100 30408000 24077000 36959000 23221000 22412000 20172000 19852000 20751000 5 5 3 5 5 5 5 5 5 5 5 19685000 34088000 28368 34657000 20858000 19233000 18127000 24924000 23055000 24520000 26620000 18328000 31810000 1473500 35085000 19920000 20673000 18682000 25042000 23366000 23965000 25569000 5 5 1 5 5 5 5 5 5 5 5 4583500000 2710800000 1872800000 7683 810 7162 40945;40946;40947;40948;40949;40950 49211;49212;49213;49214;49215;49216;49217;49218;49219;49220 49220 10 GVVCIDEFDK Unmodified 1180.5434 0.54342452 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 59.338 59.208 2 1.1461E-08 19871 20211116_3430_TMUAki_TMT10x_P_F3 133.57 86.682 16046000 24314000 100500 33523000 17329000 15424000 12637000 11764000 12885000 12295000 18202000 14939000 22722000 1272800 33278000 16493000 16747000 13071000 12162000 13286000 11986000 17394000 3 3 1 3 3 3 3 3 3 3 3 6498400 9601900 0 12973000 10427000 10093000 6256400 4590100 5087200 4756600 6840300 6049600 8972200 461270 12953000 9884300 10336000 6528000 4949600 5288700 4638700 6544300 1 1 0 1 1 1 1 1 1 1 1 9547200 14712000 100500 20551000 6902000 5331500 6380400 7174300 7798300 7538000 11361000 8889900 13750000 811560 20325000 6608500 6411500 6543100 7212200 7997800 7347000 10850000 2 2 1 2 2 2 2 2 2 2 2 1303500000 589690000 713770000 7684 799 7163 40951;40952;40953;40954 49221;49222;49223;49224 49221 4 GVVCIDEFDKMSDMDR Oxidation (M) 1931.8063 0.80633385 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 1 1 By MS/MS 3 0 1 1 54.918 54.721 3 0.00022065 17988 20211116_3430_TMUAki_TMT10x_P_F3 75.669 68.611 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7685 799 7164 40955 49225 49225 943;944 1 GVVCIDEFDKMSDMDR 2 Oxidation (M) 1947.8012 0.80124848 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 2 1 By MS/MS 2.5 0.5 1 1 2 51.405 51.149 3 0.0017633 17606 20211116_3441_TMUAki_TMT10x_S_F3 63.037 57.536 832690 1593400 2903.7 1390000 986900 1203500 800310 2823800 2933100 2527300 1856000 775340 1486100 73902 1429600 941770 1274000 887570 2780400 2852400 2480500 1823700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 832690 1593400 2903.7 1390000 986900 1203500 800310 2823800 2933100 2527300 1856000 775340 1486100 73902 1429600 941770 1274000 887570 2780400 2852400 2480500 1823700 1 1 1 1 1 1 1 1 1 1 1 167090000 0 167090000 7686 799 7164 40956;40957 49226 49226 943;944 1 GVVDSDDLPLNVSR Unmodified 1484.7471 0.74708636 672 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 By MS/MS By MS/MS 3.14 1.1 2 4 7 7 2 8 14 57.745 57.662 2;3 1.1101E-71 17743 20211116_3429_TMUAki_TMT10x_P_F2 322.99 282.64 56058000 95327000 210300 106680000 78425000 91193000 58528000 85159000 84881000 75466000 83797000 52190000 88993000 4287600 107800000 74654000 93721000 61223000 86598000 85160000 74103000 80869000 23 23 10 23 23 23 23 23 23 23 23 26266000 43297000 120780 48816000 52403000 66817000 39172000 39317000 39586000 35954000 39303000 24454000 40422000 2293000 49679000 49897000 66340000 40438000 41262000 40243000 35253000 37922000 10 10 5 10 10 10 10 10 10 10 10 29792000 52029000 89516 57867000 26023000 24376000 19356000 45842000 45296000 39511000 44494000 27736000 48571000 1994600 58121000 24757000 27381000 20785000 45336000 44917000 38850000 42947000 13 13 5 13 13 13 13 13 13 13 13 19123000000 10857000000 8266100000 7687 672 7165 40958;40959;40960;40961;40962;40963;40964;40965;40966;40967;40968;40969;40970;40971;40972;40973;40974;40975;40976;40977;40978;40979 49227;49228;49229;49230;49231;49232;49233;49234;49235;49236;49237;49238;49239;49240;49241;49242;49243;49244;49245;49246;49247;49248;49249;49250;49251;49252;49253;49254;49255 49229 29 GVVDSEDLPLNISR Unmodified 1512.7784 0.77838649 553;544 P07900;P07900-2;P08238 HSP90AA1;HSP90AB1 Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta no no 0 0 0 0 By MS/MS By MS/MS 4.07 1.87 4 4 8 11 5 2 6 1 19 22 62.645 62.628 2;3 4.4599E-100 20078 20211116_3439_TMUAki_TMT10x_S_F1 371.33 0 279890000 461530000 2174900 495140000 378310000 489540000 323240000 375110000 364860000 359120000 391370000 260600000 430780000 22858000 502670000 361300000 496480000 332050000 386680000 370300000 351390000 376720000 47 47 14 47 47 47 47 47 47 47 47 168060000 273080000 1761200 299120000 265530000 386260000 231460000 227960000 222190000 216060000 232960000 156490000 254910000 14939000 304620000 253780000 384560000 236270000 239400000 226830000 211510000 224400000 25 25 5 25 25 25 25 25 25 25 25 111830000 188450000 413720 196020000 112770000 103280000 91784000 147150000 142670000 143060000 158400000 104110000 175880000 7918600 198060000 107520000 111920000 95773000 147280000 143470000 139890000 152320000 22 22 9 22 22 22 22 22 22 22 22 272910000000 162560000000 110350000000 7688 544;553 7166 40980;40981;40982;40983;40984;40985;40986;40987;40988;40989;40990;40991;40992;40993;40994;40995;40996;40997;40998;40999;41000;41001;41002;41003;41004;41005;41006;41007;41008;41009;41010;41011;41012;41013;41014;41015;41016;41017;41018;41019;41020 49256;49257;49258;49259;49260;49261;49262;49263;49264;49265;49266;49267;49268;49269;49270;49271;49272;49273;49274;49275;49276;49277;49278;49279;49280;49281;49282;49283;49284;49285;49286;49287;49288;49289;49290;49291;49292;49293;49294;49295;49296;49297;49298;49299;49300;49301;49302;49303;49304;49305;49306;49307;49308;49309;49310;49311 49285 56 GVVGPGPAAIAALGGGGAGPPVVGGGGGR Unmodified 2281.2291 0.22911209 763 P22059 OSBP Oxysterol-binding protein 1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 70.195 69.753 3 2.8977E-06 25204 20211116_3441_TMUAki_TMT10x_S_F3 73.574 65.661 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7689 763 7167 41021 49312 49312 1 GVVHDDMECSHYMK 2 Oxidation (M) 1738.6749 0.67492575 1141 P50579;P50579-3;P50579-2 METAP2 Methionine aminopeptidase 2 yes no 0 0 2 0 By MS/MS 3 0 1 1 29.21 28.936 4 0.0010219 8652 20211116_3441_TMUAki_TMT10x_S_F3 70.563 65.386 162500 260880 57.763 266720 173720 157620 193450 133840 131250 135280 202420 151300 243460 12761 270060 167010 166770 193260 137320 138770 132060 193070 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 162500 260880 57.763 266720 173720 157620 193450 133840 131250 135280 202420 151300 243460 12761 270060 167010 166770 193260 137320 138770 132060 193070 2 2 1 2 2 2 2 2 2 2 2 8132900 0 8132900 7690 1141 7168 41022 49313;49314 49313 1506;1507 2 GVVLFPWQAR Unmodified 1171.6502 0.65021327 3248 Q9Y2S7 POLDIP2 Polymerase delta-interacting protein 2 yes yes 0 0 0 0 By MS/MS 5 0 1 1 72.748 72.8 2 0.0019599 23986 20211116_3433_TMUAki_TMT10x_P_F5 81.191 59.89 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7691 3248 7169 41023 49315 49315 1 GVVPDNHPYCVGAAR Unmodified 1610.7624 0.76235927 3138 Q9UJ83;Q9UJ83-3;Q9UJ83-4;Q9UJ83-2 HACL1 2-hydroxyacyl-CoA lyase 1 yes no 0 0 0 0 By MS/MS By MS/MS 5 0 3 1 2 32.882 32.94 3 1.3088E-07 8250 20211116_3433_TMUAki_TMT10x_P_F5 119.96 104.21 467440 760730 0 884090 1273400 1057800 648100 632200 776810 634390 695820 435160 710310 40648 895800 1204700 1057300 694080 664320 781760 619490 673740 2 2 0 2 2 2 2 2 2 2 2 434500 697840 0 814880 1232800 1031000 615640 606450 739580 613160 640480 404500 651600 38593 826280 1166000 1027400 660580 638220 743450 598570 620910 1 1 0 1 1 1 1 1 1 1 1 32937 62895 0 69205 40599 26815 32464 25748 37231 21234 55340 30661 58711 2055.4 69521 38673 29908 33503 26097 38310 20924 52824 1 1 0 1 1 1 1 1 1 1 1 59053000 52286000 6767000 7692 3138 7170 41024;41025;41026 49316;49317;49318 49316 3 GVVPGGGLK Unmodified 782.46504 0.46503826 360 O75822;O75822-2;O75822-3 EIF3J Eukaryotic translation initiation factor 3 subunit J yes no 0 0 0 0 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 40.014 40.32 2 3.2894E-05 10336 20211116_3436_TMUAki_TMT10x_P_F8 119.57 78.064 5436800 8974200 41788 9768200 7473400 7666200 6254700 5197400 6036600 5124300 7203500 5062500 8376800 516460 9877700 7137600 7884000 6401400 5406800 6192200 5007600 6912800 5 5 4 5 5 5 5 5 5 5 5 2924400 4649200 32544 5157400 4940000 5610800 3586100 2674900 3086600 2719600 3844300 2723200 4340100 301020 5232300 4704700 5622000 3692900 2869200 3188800 2654200 3685000 1 1 1 1 1 1 1 1 1 1 1 2512400 4325000 9244.5 4610800 2533300 2055400 2668600 2522500 2950100 2404700 3359200 2339300 4036800 215440 4645400 2432900 2262000 2708500 2537600 3003400 2353400 3227900 4 4 3 4 4 4 4 4 4 4 4 425990000 252210000 173780000 7693 360 7171 41027;41028;41029;41030;41031;41032 49319;49320;49321;49322;49323;49324 49320 6 GVVPLAGTDGETTTQGLDGLSER Unmodified 2272.1183 0.11828382 590 P09972 ALDOC Fructose-bisphosphate aldolase C yes yes 0 0 0 0 By MS/MS By MS/MS 3.29 0.933 5 7 7 2 10 11 63.517 63.324 2;3 5.4603E-163 22810 20211116_3441_TMUAki_TMT10x_S_F3 401.28 379.51 59812000 102610000 289420 100980000 71107000 97538000 68780000 75952000 71339000 73095000 77893000 55690000 95742000 4279600 103080000 68112000 99093000 69968000 78227000 72696000 71506000 74937000 37 37 11 37 37 37 37 37 37 37 37 33070000 55504000 199340 53649000 41747000 73191000 44161000 40750000 38946000 40442000 41872000 30791000 51784000 2577400 55154000 40088000 72627000 44506000 43059000 39953000 39510000 40302000 20 20 7 20 20 20 20 20 20 20 20 26743000 47108000 90077 47335000 29360000 24347000 24620000 35202000 32393000 32653000 36021000 24899000 43958000 1702200 47930000 28023000 26465000 25461000 35167000 32743000 31996000 34636000 17 17 4 17 17 17 17 17 17 17 17 38622000000 22201000000 16421000000 7694 590 7172 41033;41034;41035;41036;41037;41038;41039;41040;41041;41042;41043;41044;41045;41046;41047;41048;41049;41050;41051;41052;41053 49325;49326;49327;49328;49329;49330;49331;49332;49333;49334;49335;49336;49337;49338;49339;49340;49341;49342;49343;49344;49345;49346;49347;49348;49349;49350;49351;49352;49353;49354;49355;49356;49357;49358;49359;49360;49361 49352 37 GVVPLAGTNGETTTQGLDGLSER Unmodified 2271.1343 0.13426824 482 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 By MS/MS By MS/MS 3.89 1.05 2 4 7 4 1 7 11 59.942 59.857 2;3 9.4216E-198 18886 20211116_3442_TMUAki_TMT10x_S_F4 398.31 383.15 75473000 137690000 2030400 129160000 83807000 117630000 87413000 101620000 107490000 100110000 106070000 70285000 128450000 7354400 132190000 80549000 120190000 89100000 104080000 108430000 97832000 102360000 24 24 16 24 24 24 24 24 24 24 24 31024000 54866000 989760 53573000 37573000 68103000 44325000 42109000 40389000 40104000 40263000 28892000 51191000 2784700 54962000 36241000 67899000 44486000 44066000 41257000 39251000 38844000 11 11 6 11 11 11 11 11 11 11 11 44448000 82827000 1040600 75585000 46234000 49531000 43088000 59512000 67104000 60003000 65806000 41393000 77259000 4569700 77231000 44308000 52290000 44614000 60019000 67170000 58582000 63521000 13 13 10 13 13 13 13 13 13 13 13 61310000000 27487000000 33823000000 7695 482 7173 41054;41055;41056;41057;41058;41059;41060;41061;41062;41063;41064;41065;41066;41067;41068;41069;41070;41071 49362;49363;49364;49365;49366;49367;49368;49369;49370;49371;49372;49373;49374;49375;49376;49377;49378;49379;49380;49381;49382;49383;49384;49385;49386;49387 49381 26 GVVQELQQAISK Unmodified 1298.7194 0.71941505 856;855 P29692;P29692-3;P29692-2 EEF1D Elongation factor 1-delta no no 0 0 0 0 By MS/MS By MS/MS 6.5 1.12 4 4 4 4 8 8 68.878 68.976 2;3 1.7643E-30 21626 20211116_3445_TMUAki_TMT10x_S_F6 266.26 215.2 161140000 267420000 1155900 254670000 176150000 230110000 182950000 154370000 153500000 156570000 190660000 150030000 249480000 13147000 260340000 169040000 234230000 184300000 160840000 158770000 152830000 182780000 17 17 6 17 17 17 17 17 17 17 17 86738000 138080000 408680 133300000 95970000 156710000 101870000 81535000 80867000 80984000 98923000 80756000 128830000 6632800 136670000 92124000 156510000 102380000 86676000 83828000 79116000 94869000 8 8 2 8 8 8 8 8 8 8 8 74401000 129340000 747240 121370000 80175000 73400000 81073000 72834000 72638000 75590000 91740000 69277000 120660000 6514100 123660000 76916000 77722000 81928000 74163000 74943000 73712000 87907000 9 9 4 9 9 9 9 9 9 9 9 20991000000 10790000000 10201000000 7696 855;856 7174 41072;41073;41074;41075;41076;41077;41078;41079;41080;41081;41082;41083;41084;41085;41086;41087 49388;49389;49390;49391;49392;49393;49394;49395;49396;49397;49398;49399;49400;49401;49402;49403;49404;49405;49406 49401 19 GVVQLFNAVQK Unmodified 1201.6819 0.68190733 3270 Q9Y3B9 RRP15 RRP15-like protein yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 67.465 67.089 2;3 2.3803E-15 23076 20211116_3430_TMUAki_TMT10x_P_F3 179.68 139.58 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7697 3270 7175 41088;41089 49407;49408 49407 2 GVVSGEVER Unmodified 930.47706 0.47705951 1508 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 0 0 0 0 By MS/MS By matching 2.5 0.5 1 1 1 1 30.615 30.374 2 0.0083153 7720 20211116_3429_TMUAki_TMT10x_P_F2 72.879 32.193 171810 299680 974.83 301070 319480 370750 239540 201150 235030 180970 265670 159980 279640 17221 308090 304380 369580 247010 212470 240380 177580 255330 1 1 1 1 1 1 1 1 1 1 1 171810 299680 974.83 301070 319480 370750 239540 201150 235030 180970 265670 159980 279640 17221 308090 304380 369580 247010 212470 240380 177580 255330 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17281000 11076000 6205500 7698 1508 7176 41090;41091 49409 49409 1 GVVTLLSDYEVCK Unmodified 1481.7436 0.74358089 3154 Q9UKD2 MRTO4 mRNA turnover protein 4 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 5.86 0.639 2 4 1 4 3 74.493 74.455 2;3 2.1109E-18 25843 20211116_3446_TMUAki_TMT10x_S_F7 148.18 131.96 4970700 8683800 0 9081900 3941600 6006100 4179400 4638400 3628100 4973000 6041200 4628200 8104400 390230 9191000 3784900 6277600 4209800 4795000 3800700 4843100 5753000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4970700 8683800 0 9081900 3941600 6006100 4179400 4638400 3628100 4973000 6041200 4628200 8104400 390230 9191000 3784900 6277600 4209800 4795000 3800700 4843100 5753000 2 2 0 2 2 2 2 2 2 2 2 2061000000 1093600000 967440000 7699 3154 7177 41092;41093;41094;41095;41096;41097;41098 49410;49411;49412;49413 49413 4 GVVTLLSDYEVCKEGDVLTPEQAR Unmodified 2677.3269 0.32689639 3154 Q9UKD2 MRTO4 mRNA turnover protein 4 homolog yes yes 0 0 0 1 By MS/MS By MS/MS 4.79 1.15 2 4 4 3 1 6 8 75.87 75.858 3;4 2.3137E-48 24116 20211116_3444_TMUAki_TMT10x_S_F5 213.13 201.18 38077000 70336000 581840 57206000 53326000 60890000 50330000 44969000 41453000 47102000 52259000 35457000 65582000 3736500 59342000 51080000 61446000 50933000 46589000 42943000 45914000 50078000 18 18 11 18 18 18 18 18 18 18 18 15089000 26366000 173500 21881000 15877000 30869000 19524000 16966000 15979000 17995000 19496000 14050000 24585000 1339200 22773000 15320000 30580000 19504000 17982000 16536000 17532000 18698000 7 7 3 7 7 7 7 7 7 7 7 22988000 43970000 408340 35325000 37449000 30021000 30805000 28003000 25473000 29107000 32763000 21407000 40997000 2397200 36569000 35760000 30865000 31429000 28607000 26407000 28382000 31379000 11 11 8 11 11 11 11 11 11 11 11 6517200000 3061300000 3455900000 7700 3154 7178 41099;41100;41101;41102;41103;41104;41105;41106;41107;41108;41109;41110;41111;41112 49414;49415;49416;49417;49418;49419;49420;49421;49422;49423;49424;49425;49426;49427;49428;49429;49430;49431;49432 49427 19 GVVVVIK Unmodified 712.48471 0.48471107 1053 P46779;P46779-2;P46779-3;P46779-4;P46779-5 RPL28 60S ribosomal protein L28 yes no 0 0 0 0 By MS/MS By MS/MS 4.17 2.54 2 2 2 2 2 2 5 7 49.526 49.515 2 0.001158 13792 20211116_3428_TMUAki_TMT10x_P_F1 140.79 71.351 67258000 99203000 148390 108970000 69870000 79293000 62069000 58627000 59160000 61461000 73160000 62623000 92604000 5429900 110040000 66787000 82145000 63277000 60736000 60809000 59909000 70142000 10 10 4 10 10 10 10 10 10 10 10 37710000 53079000 0 59399000 44700000 53712000 33028000 29082000 30128000 32016000 39207000 35110000 49552000 2973300 60065000 42551000 54515000 34022000 30899000 31099000 31147000 37540000 4 4 0 4 4 4 4 4 4 4 4 29548000 46124000 148390 49576000 25170000 25582000 29042000 29545000 29032000 29445000 33954000 27513000 43052000 2456600 49973000 24236000 27630000 29255000 29837000 29710000 28762000 32601000 6 6 4 6 6 6 6 6 6 6 6 4246700000 2395000000 1851800000 7701 1053 7179 41113;41114;41115;41116;41117;41118;41119;41120;41121;41122;41123;41124 49433;49434;49435;49436;49437;49438;49439;49440;49441;49442;49443;49444;49445 49433 13 GVVVVIKR Unmodified 868.58582 0.5858221 1053 P46779;P46779-2;P46779-3;P46779-4;P46779-5 RPL28 60S ribosomal protein L28 yes no 0 0 0 1 By MS/MS By MS/MS 4.55 1.3 1 7 1 1 1 3 8 35.474 35.543 3 4.8819E-13 12335 20211116_3441_TMUAki_TMT10x_S_F3 207.86 113.45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7702 1053 7180 41125;41126;41127;41128;41129;41130;41131;41132;41133;41134;41135 49446;49447;49448;49449;49450;49451;49452;49453;49454;49455;49456 49449 11 GVYGYRPR Unmodified 966.50355 0.50354903 2492 Q96HY7 DHTKD1 Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 29.518 29.468 3 0.0057532 7370 20211116_3429_TMUAki_TMT10x_P_F2 81.613 53.101 904650 1293500 7156.9 1368100 1018000 1147600 944100 580960 652960 651720 996950 842300 1207200 74568 1387100 974090 1170000 952490 621390 689220 633580 951070 3 3 1 3 3 3 3 3 3 3 3 617560 839980 0 889530 697730 872300 630910 404080 441790 431380 672190 574940 783980 43632 903710 666770 879180 637600 435280 465890 420190 641310 2 2 0 2 2 2 2 2 2 2 2 287090 453510 7156.9 478540 320250 275290 313190 176880 211180 220330 324760 267360 423260 30936 483380 307320 290770 314900 186110 223330 213400 309770 1 1 1 1 1 1 1 1 1 1 1 15809000 10903000 4905700 7703 2492 7181 41136;41137;41138 49457;49458;49459 49458 3 GVYPDLLATSGDYLR Unmodified 1638.8253 0.82533668 1325 P61962 DCAF7 DDB1- and CUL4-associated factor 7 yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 2 4 3 3 73.635 73.569 2;3 2.604E-37 23484 20211116_3445_TMUAki_TMT10x_S_F6 239.16 190.87 10887000 19085000 136360 16498000 13706000 13969000 13534000 9498300 8611900 9842400 13031000 10137000 17799000 1045600 16976000 13144000 14286000 13585000 9893200 9133300 9598400 12434000 5 5 4 5 5 5 5 5 5 5 5 2763600 4725300 47525 4306100 2649800 4659800 3316400 2438700 2198900 2665200 3516600 2573500 4407700 271820 4427800 2560400 4675400 3294500 2598400 2332600 2593600 3351600 1 1 1 1 1 1 1 1 1 1 1 8123000 14360000 88836 12192000 11056000 9308800 10218000 7059600 6413000 7177200 9514800 7563700 13391000 773800 12548000 10584000 9610500 10290000 7294800 6800700 7004800 9082600 4 4 3 4 4 4 4 4 4 4 4 1633300000 774280000 859050000 7704 1325 7182 41139;41140;41141;41142;41143;41144 49460;49461;49462;49463;49464;49465;49466;49467 49464 8 GVYSEETLR Unmodified 1052.5138 0.51383895 1872 Q16891;Q16891-2;Q16891-4;Q16891-3 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 By MS/MS By MS/MS 2 0.632 1 3 1 1 4 32.038 32.095 2 6.2801E-06 7172 20211116_3440_TMUAki_TMT10x_S_F2 170.22 131.98 122980 177190 632.1 203400 121780 95932 124260 114670 150470 120980 164410 114510 165430 8515.3 204050 116870 104780 126730 115830 152420 117900 158170 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 122980 177190 632.1 203400 121780 95932 124260 114670 150470 120980 164410 114510 165430 8515.3 204050 116870 104780 126730 115830 152420 117900 158170 2 2 1 2 2 2 2 2 2 2 2 11333000 0 11333000 7705 1872 7183 41145;41146;41147;41148;41149 49468;49469;49470;49471;49472 49471 5 GWAAAVTFHPR Unmodified 1211.62 0.61997578 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 46.482 46.308 3 1.0167E-06 15692 20211116_3441_TMUAki_TMT10x_S_F3 125.74 108.57 1537500 2358000 31260 2792300 2479700 2479300 1738100 2216200 1946000 1955800 2243600 1431800 2201900 169800 2813200 2360900 2539200 1808200 2258800 1981100 1920800 2155100 2 2 2 2 2 2 2 2 2 2 2 755130 1025000 297.16 1262900 1714600 1862400 1087000 1130000 1005500 1054100 1171600 703110 957280 76321 1280500 1628300 1843800 1132900 1183600 1032400 1032600 1125100 1 1 1 1 1 1 1 1 1 1 1 782330 1333000 30963 1529400 765110 616970 651010 1086200 940460 901660 1072000 728660 1244600 93476 1532700 732630 695350 675280 1075200 948750 888210 1030000 1 1 1 1 1 1 1 1 1 1 1 244160000 121380000 122780000 7706 157 7184 41150;41151 49473;49474 49474 2 GWAPTFLGYSMQGLCK Oxidation (M) 1830.8433 0.84331171 1466 Q00325-2;Q00325 SLC25A3 Phosphate carrier protein, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 75.85 75.792 3 1.3903E-07 25349 20211116_3442_TMUAki_TMT10x_S_F4 110.98 92.152 8665600 15202000 222550 15449000 10112000 11601000 10608000 5455700 4969000 6376200 10138000 8070200 14186000 946100 15685000 9721500 11918000 10559000 5884700 5485300 6189400 9620100 3 3 3 3 3 3 3 3 3 3 3 5744200 9534400 129470 9455500 6235400 9115500 7190300 3614700 3366200 4412700 6476300 5349300 8896300 603770 9646600 6010700 9183600 7125100 3976600 3702300 4276800 6151200 2 2 2 2 2 2 2 2 2 2 2 2921400 5668000 93083 5993200 3876200 2485600 3417400 1841100 1602800 1963500 3662100 2720800 5290100 342330 6038700 3710800 2734000 3434300 1908100 1783000 1912600 3469000 1 1 1 1 1 1 1 1 1 1 1 1244100000 735400000 508700000 7707 1466 7185 41152;41153;41154 49475;49476;49477 49477 1968 3 GWDEALLTMSK Oxidation (M) 1265.5962 0.59618837 1472 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 0 0 1 0 By MS/MS 5 0 1 1 62.737 62.895 2 0.04451 19904 20211116_3433_TMUAki_TMT10x_P_F5 64.091 44.304 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7708 1472 7186 41155 49478 49478 1987 1 GWEEGVAQMSVGQR Oxidation (M) 1548.6991 0.69909031 1386 P62942 FKBP1A Peptidyl-prolyl cis-trans isomerase FKBP1A yes yes 0 0 1 0 By MS/MS By MS/MS 3.25 0.661 1 4 3 4 4 41.886 41.877 2;3 1.0199E-08 11436 20211116_3442_TMUAki_TMT10x_S_F4 125.66 105.67 5668900 9259400 62911 10883000 9441100 9871500 6639600 7008500 7542500 6008200 8158800 5278500 8646100 540440 10973000 8983200 10055000 6909300 7240300 7655500 5909200 7851400 6 6 3 6 6 6 6 6 6 6 6 3487600 5595900 46663 6485700 7546800 8206000 4857700 4285200 4730800 3755700 4934600 3247400 5224900 355090 6579400 7169200 8165500 5064000 4538900 4825600 3689900 4753900 3 3 1 3 3 3 3 3 3 3 3 2181300 3663500 16248 4397700 1894300 1665500 1782000 2723300 2811600 2252500 3224200 2031100 3421200 185350 4393700 1814000 1889000 1845300 2701400 2829900 2219300 3097500 3 3 2 3 3 3 3 3 3 3 3 744210000 494080000 250130000 7709 1386 7187 41156;41157;41158;41159;41160;41161;41162;41163 49479;49480;49481;49482;49483;49484;49485;49486 49486 1863 8 GWEEGVAQMSVGQR Unmodified 1532.7042 0.70417569 1386 P62942 FKBP1A Peptidyl-prolyl cis-trans isomerase FKBP1A yes yes 0 0 0 0 By MS/MS By MS/MS 4.25 0.433 3 1 3 1 53.036 53.202 2;3 5.7322E-30 16183 20211116_3442_TMUAki_TMT10x_S_F4 215.71 190.93 3188700 4989200 83070 6155700 7315500 7928400 4853100 4716700 4646300 4054500 4745000 2969700 4659800 399580 6224000 6957500 7895400 5045000 4937900 4739300 3987200 4574200 1 1 1 1 1 1 1 1 1 1 1 3188700 4989200 83070 6155700 7315500 7928400 4853100 4716700 4646300 4054500 4745000 2969700 4659800 399580 6224000 6957500 7895400 5045000 4937900 4739300 3987200 4574200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 344460000 344460000 0 7710 1386 7187 41164;41165;41166;41167 49487;49488;49489;49490 49490 4 GWFDAEGQALDGVSISDLK Unmodified 2006.9585 0.9585357 828 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 0 0 0 0 By MS/MS By matching 4.67 0.471 1 2 2 1 79.04 79.053 3 1.9967E-06 26331 20211116_3431_TMUAki_TMT10x_P_F4 94.057 78.465 11745000 17702000 0 16399000 10307000 17686000 13333000 7893300 8097000 8897300 13417000 10935000 16513000 888110 16841000 9954700 17718000 13204000 8549600 8655100 8648200 12778000 3 3 0 3 3 3 3 3 3 3 3 11745000 17702000 0 16399000 10307000 17686000 13333000 7893300 8097000 8897300 13417000 10935000 16513000 888110 16841000 9954700 17718000 13204000 8549600 8655100 8648200 12778000 3 3 0 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2086300000 1562200000 524150000 7711 828 7188 41168;41169;41170 49491;49492 49492 2 GWPLELLCEK Unmodified 1243.6271 0.62709457 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 78.602 78.651 2 5.197E-05 25168 20211116_3434_TMUAki_TMT10x_P_F6 101.65 0 14815000 23756000 10139 24938000 16583000 18066000 18337000 8417200 6734700 9233800 16227000 13794000 22172000 1235600 25255000 15943000 18612000 18149000 9069500 7696000 8984500 15360000 2 2 1 2 2 2 2 2 2 2 2 7192900 11254000 10139 12048000 8574100 11613000 9071700 4400000 3589400 4803400 7940900 6697400 10504000 625130 12228000 8234400 11695000 9006100 4849700 4045900 4674600 7525600 1 1 1 1 1 1 1 1 1 1 1 7622400 12502000 0 12890000 8008600 6453500 9265400 4017200 3145300 4430400 8286400 7097000 11668000 610480 13026000 7708900 6916600 9143100 4219700 3650100 4309900 7834500 1 1 0 1 1 1 1 1 1 1 1 1313800000 679110000 634710000 7712 1576 7189 41171;41172;41173 49493;49494;49495 49493 3 GWTGQESLSDSDPEMWELLQR Oxidation (M) 2479.0962 0.096168169 915 P34897;P34897-3;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 1 0 By MS/MS By matching 2.33 0.471 2 1 2 1 75.837 75.715 3 6.9609E-14 25927 20211116_3429_TMUAki_TMT10x_P_F2 124.94 119.73 1149600 1916100 722.36 1793000 1220200 2206000 1529200 1029300 1003100 1054400 1571200 1070400 1787500 96973 1844000 1177800 2195400 1518600 1106600 1063700 1028700 1498100 1 1 1 1 1 1 1 1 1 1 1 1149600 1916100 722.36 1793000 1220200 2206000 1529200 1029300 1003100 1054400 1571200 1070400 1787500 96973 1844000 1177800 2195400 1518600 1106600 1063700 1028700 1498100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 746500000 692290000 54209000 7713 915 7190 41174;41175;41176 49496;49497 49496 1146 2 GWVTFDR Unmodified 879.4239 0.42390173 2715 Q9BXP5;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3 SRRT Serrate RNA effector molecule homolog yes no 0 0 0 0 By MS/MS 6 0 1 1 51.088 51.23 2 0.0056117 14339 20211116_3445_TMUAki_TMT10x_S_F6 107.59 72.488 2560000 3946200 0 4792200 2420700 1748100 2162100 2491000 1895200 2165800 2994100 2383600 3685400 207310 4783600 2314400 1985300 2198400 2485400 1978700 2128600 2854300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2560000 3946200 0 4792200 2420700 1748100 2162100 2491000 1895200 2165800 2994100 2383600 3685400 207310 4783600 2314400 1985300 2198400 2485400 1978700 2128600 2854300 1 1 0 1 1 1 1 1 1 1 1 128200000 0 128200000 7714 2715 7191 41177 49498 49498 1 GYADIVQLLLAK Unmodified 1302.7547 0.75473792 2372 Q92882 OSTF1 Osteoclast-stimulating factor 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.6 0.49 2 3 2 3 81.506 81.489 2;3 2.1396E-07 28880 20211116_3430_TMUAki_TMT10x_P_F3 107.95 68.243 1498300 2529900 7797.1 2398000 1585800 2350700 1929900 1402700 1434600 1612800 1933300 1395100 2360200 129490 2455000 1529400 2376300 1924300 1480300 1498900 1566500 1849500 2 2 1 2 2 2 2 2 2 2 2 872360 1406100 7797.1 1338200 829330 1561500 1008400 823250 881370 944300 1057100 812310 1311800 78989 1373300 800170 1560400 1009500 877900 908430 917270 1014300 1 1 1 1 1 1 1 1 1 1 1 625900 1123900 0 1059900 756460 789220 921570 579420 553260 668520 876150 582750 1048400 50497 1081700 729270 815990 914750 602370 590420 649240 835190 1 1 0 1 1 1 1 1 1 1 1 364450000 193610000 170830000 7715 2372 7192 41178;41179;41180;41181;41182 49499;49500;49501;49502 49500 4 GYAFIEYEHER Unmodified 1412.6361 0.63607935 560 P08621;P08621-2;P08621-3 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 0 0 0 0 By MS/MS By MS/MS 3.57 1.72 2 2 3 3 2 1 1 7 7 42.999 43.043 2;3 1.1862E-15 13111 20211116_3430_TMUAki_TMT10x_P_F3 202.2 173.51 20507000 33901000 418470 37451000 38726000 39850000 23598000 34675000 38030000 31247000 33821000 19097000 31646000 2245800 37991000 36770000 40332000 25174000 35413000 37908000 30658000 32756000 17 17 11 17 17 17 17 17 17 17 17 10385000 16251000 83651 18237000 28093000 30274000 15034000 16821000 18903000 14629000 15565000 9669000 15171000 1087300 18645000 26607000 29796000 16052000 17716000 18943000 14377000 15118000 9 9 3 9 9 9 9 9 9 9 9 10122000 17650000 334820 19213000 10633000 9576500 8564000 17854000 19127000 16618000 18256000 9427500 16475000 1158400 19346000 10163000 10536000 9122000 17698000 18965000 16281000 17638000 8 8 8 8 8 8 8 8 8 8 8 6674600000 4060700000 2613900000 7716 560 7193 41183;41184;41185;41186;41187;41188;41189;41190;41191;41192;41193;41194;41195;41196 49503;49504;49505;49506;49507;49508;49509;49510;49511;49512;49513;49514;49515;49516;49517;49518;49519;49520 49508 18 GYAFIEYEHERDMHSAYK Unmodified 2244.9899 0.9898526 560 P08621;P08621-2 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 0 0 0 1 By MS/MS 3.5 0.5 1 1 2 43.613 43.686 5 4.0919E-08 11851 20211116_3431_TMUAki_TMT10x_P_F4 111.06 100.21 3012000 5299300 46022 6360700 6658900 7261200 4798500 3357000 3279900 3255600 4043200 2804800 4948800 339960 6427500 6340600 7253900 4917500 3607100 3430300 3183800 3876700 3 3 2 3 3 3 3 3 3 3 3 3012000 5299300 46022 6360700 6658900 7261200 4798500 3357000 3279900 3255600 4043200 2804800 4948800 339960 6427500 6340600 7253900 4917500 3607100 3430300 3183800 3876700 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 362900000 362900000 0 7717 560 7194 41197;41198 49521;49522;49523 49522 3 GYAFIEYEHERDMHSAYK Oxidation (M) 2260.9848 0.98476723 560 P08621;P08621-2 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 0 0 1 1 By MS/MS 5 1 1 1 2 40.177 40.357 5 3.6336E-05 10927 20211116_3442_TMUAki_TMT10x_S_F4 81.428 59.417 1023200 2152800 78408 2493000 1259600 1198300 1159900 2082000 2346600 1950600 2054000 953320 2010100 161220 2499900 1210100 1320400 1218500 2068300 2324900 1910500 1990500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1023200 2152800 78408 2493000 1259600 1198300 1159900 2082000 2346600 1950600 2054000 953320 2010100 161220 2499900 1210100 1320400 1218500 2068300 2324900 1910500 1990500 2 2 2 2 2 2 2 2 2 2 2 635750000 0 635750000 7718 560 7194 41199;41200 49524;49525 49524 521 2 GYAFITFCGK Unmodified 1162.5481 0.54811597 211 O43390;O43390-2;O43390-3;O43390-4 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 0 By MS/MS By MS/MS 2.64 0.881 1 4 4 2 5 6 66.977 66.682 2;3 8.8427E-10 23921 20211116_3441_TMUAki_TMT10x_S_F3 192.14 156.63 55027000 90603000 258900 84696000 74414000 94935000 66144000 76058000 65951000 66390000 69310000 51235000 84520000 4832900 86974000 71144000 95658000 67519000 77994000 67221000 65238000 66757000 9 9 4 9 9 9 9 9 9 9 9 28424000 43844000 24970 41676000 38428000 67408000 37796000 38099000 33132000 33569000 33772000 26464000 40903000 2330000 43054000 36820000 66425000 38227000 40080000 33933000 32972000 32559000 4 4 1 4 4 4 4 4 4 4 4 26603000 46759000 233930 43019000 35986000 27527000 28348000 37959000 32818000 32820000 35538000 24771000 43617000 2502900 43919000 34324000 29232000 29292000 37914000 33288000 32266000 34198000 5 5 3 5 5 5 5 5 5 5 5 13070000000 7030500000 6039500000 7719 211 7195 41201;41202;41203;41204;41205;41206;41207;41208;41209;41210;41211 49526;49527;49528;49529;49530;49531;49532;49533;49534;49535 49533 10 GYAFNHSADFETVR Unmodified 1612.727 0.72701962 1297 P61160;P61160-2 ACTR2 Actin-related protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 1.12 2 2 2 2 4 4 42.13 42.184 3 2.2278E-37 10380 20211116_3444_TMUAki_TMT10x_S_F5 239.38 213.25 13136000 20999000 131840 28526000 25826000 25161000 17074000 18256000 17132000 16241000 19581000 12231000 19623000 890820 28520000 24549000 25685000 17778000 18850000 17514000 15945000 18813000 12 12 7 12 12 12 12 12 12 12 12 8386500 12889000 35967 18537000 21589000 21273000 13014000 11831000 10884000 10194000 12459000 7808700 12048000 417720 18553000 20485000 21291000 13583000 12457000 11222000 10023000 11970000 7 7 3 7 7 7 7 7 7 7 7 4749300 8110200 95874 9989300 4237700 3887800 4060100 6424600 6248000 6047400 7122100 4422800 7574700 473100 9966800 4064500 4394000 4195300 6392800 6291500 5921700 6843300 5 5 4 5 5 5 5 5 5 5 5 2576900000 1685900000 890940000 7720 1297 7196 41212;41213;41214;41215;41216;41217;41218;41219 49536;49537;49538;49539;49540;49541;49542;49543;49544;49545;49546;49547 49545 12 GYAFVEFESEDVAK Unmodified 1589.725 0.72495394 2730 Q9BYG3 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes yes 0 0 0 0 By MS/MS 3 0 1 1 69.112 68.655 3 0.0046221 24798 20211116_3441_TMUAki_TMT10x_S_F3 60.345 39.964 2475900 4276900 18313 3924800 3702000 2945700 2734200 3103100 2760100 2900100 3358200 2305500 3989500 239510 4014200 3526400 3064800 2824900 3141000 2828000 2840700 3221000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2475900 4276900 18313 3924800 3702000 2945700 2734200 3103100 2760100 2900100 3358200 2305500 3989500 239510 4014200 3526400 3064800 2824900 3141000 2828000 2840700 3221000 1 1 1 1 1 1 1 1 1 1 1 264850000 0 264850000 7721 2730 7197 41220 49548 49548 1 GYAFVHFETQEAADK Unmodified 1711.7842 0.78420015 1619 Q13310;Q13310-2;Q13310-3 PABPC4 Polyadenylate-binding protein 4 yes no 0 0 0 0 By MS/MS By MS/MS 4.38 1.32 1 1 2 2 2 4 4 52.406 52.506 3 3.9017E-24 15813 20211116_3442_TMUAki_TMT10x_S_F4 190.27 171.03 48117000 76767000 652730 92736000 61690000 66130000 49720000 45809000 47683000 45382000 58769000 44806000 71691000 4758400 93081000 58888000 68554000 50996000 47588000 48992000 44340000 56350000 13 13 11 13 13 13 13 13 13 13 13 26074000 41529000 346120 49341000 42101000 48231000 29981000 23643000 25143000 23845000 30105000 24280000 38780000 2700700 49768000 40084000 48650000 30895000 25286000 25966000 23280000 28887000 6 6 5 6 6 6 6 6 6 6 6 22043000 35238000 306620 43395000 19588000 17899000 19739000 22166000 22540000 21537000 28665000 20526000 32911000 2057700 43313000 18803000 19903000 20101000 22302000 23026000 21060000 27462000 7 7 6 7 7 7 7 7 7 7 7 6234300000 3504300000 2730000000 7722 1619 7198 41221;41222;41223;41224;41225;41226;41227;41228 49549;49550;49551;49552;49553;49554;49555;49556;49557;49558;49559;49560;49561;49562 49556 14 GYAFVHFETQEAADKAIEK Unmodified 2153.0429 0.042934032 1619 Q13310;Q13310-2;Q13310-3 PABPC4 Polyadenylate-binding protein 4 yes no 0 0 0 1 By MS/MS By MS/MS 6 0.707 1 2 1 2 2 57.696 57.905 4 3.2753E-31 17083 20211116_3445_TMUAki_TMT10x_S_F6 181.41 147.32 18691000 34486000 503900 25525000 32753000 47607000 27360000 46771000 40355000 40867000 36052000 17407000 32145000 2216200 27003000 31300000 47118000 28437000 47419000 40333000 40156000 34911000 6 6 6 6 6 6 6 6 6 6 6 9298900 17038000 285560 11896000 17245000 33027000 17108000 23614000 20723000 20343000 17570000 8660300 15879000 1148400 12815000 16549000 32131000 17472000 24386000 20812000 20003000 17047000 3 3 3 3 3 3 3 3 3 3 3 9392500 17447000 218340 13629000 15508000 14580000 10252000 23157000 19632000 20524000 18482000 8746900 16266000 1067800 14188000 14751000 14988000 10965000 23033000 19521000 20154000 17864000 3 3 3 3 3 3 3 3 3 3 3 2656400000 1453100000 1203300000 7723 1619 7199 41229;41230;41231;41232 49563;49564;49565;49566;49567;49568 49566 6 GYAFVQYSNER Unmodified 1332.6099 0.6098646 3158 Q9UKM9;Q9UKM9-2 RALY RNA-binding protein Raly yes no 0 0 0 0 By MS/MS By MS/MS 5.83 0.687 2 3 1 4 2 45.381 45.5 2;3 3.3482E-14 14066 20211116_3446_TMUAki_TMT10x_S_F7 156.26 144.42 8309700 13695000 94144 15765000 18627000 21803000 12705000 9311600 7740100 8394300 11246000 7736800 12787000 794510 16027000 17709000 21558000 13043000 10070000 8215900 8236100 10740000 2 2 1 2 2 2 2 2 2 2 2 8309700 13695000 94144 15765000 18627000 21803000 12705000 9311600 7740100 8394300 11246000 7736800 12787000 794510 16027000 17709000 21558000 13043000 10070000 8215900 8236100 10740000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1234300000 648030000 586300000 7724 3158 7200 41233;41234;41235;41236;41237;41238 49569;49570;49571;49572;49573;49574 49574 6 GYAFVTFCTK Unmodified 1192.5587 0.55868065 271;272 O60506;O60506-2;O60506-3;O60506-4;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 4 2 3 3 63.463 63.167 2;3 1.9055E-09 21457 20211116_3430_TMUAki_TMT10x_P_F3 182.76 121.85 54586000 100300000 164930 79942000 77070000 95978000 71141000 85096000 75039000 75764000 79250000 50824000 93514000 4722200 83231000 73742000 96542000 72592000 86789000 76318000 74379000 76319000 11 11 5 11 11 11 11 11 11 11 11 22784000 38424000 20313 32923000 36296000 60624000 31994000 36987000 32774000 32731000 32524000 21213000 35833000 1918700 34390000 34684000 59519000 32702000 38672000 33299000 32142000 31383000 5 5 1 5 5 5 5 5 5 5 5 31802000 61875000 144610 47018000 40775000 35354000 39147000 48108000 42265000 43033000 46726000 29611000 57681000 2803500 48841000 39058000 37023000 39890000 48118000 43019000 42238000 44937000 6 6 4 6 6 6 6 6 6 6 6 3614300000 2219500000 1394800000 7725 271;272 7201 41239;41240;41241;41242;41243;41244 49575;49576;49577;49578;49579;49580;49581;49582;49583;49584;49585 49578 11 GYAVLGGER Unmodified 920.47158 0.4715802 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 4.4 1.02 1 2 1 1 1 4 36.964 37.065 2 0.00016349 9440 20211116_3431_TMUAki_TMT10x_P_F4 136.8 108.69 2269800 3758300 28549 4110600 5873000 4368000 2699800 2597100 2854400 2175000 3123500 2113600 3508200 265250 4172400 5553300 4394200 2909200 2717300 2906600 2141600 3004800 2 2 2 2 2 2 2 2 2 2 2 1843600 3055200 24169 3363400 5452600 4054900 2316500 2156200 2381500 1796200 2530400 1716800 2852000 225920 3419800 5150800 4045600 2515700 2277300 2425200 1769100 2436400 1 1 1 1 1 1 1 1 1 1 1 426170 703120 4379.2 747170 420390 313080 383280 440880 472900 378780 593100 396840 656250 39333 752640 402420 348590 393500 439940 481440 372500 568420 1 1 1 1 1 1 1 1 1 1 1 146290000 102280000 44008000 7726 1092 7202 41245;41246;41247;41248;41249 49586;49587;49588;49589 49586 4 GYAVNVFDIQQGFDNPQVR Unmodified 2166.0494 0.049416394 1826 Q15738 NSDHL Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating yes yes 0 0 0 0 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 76.183 76.21 3 1.8939E-31 26642 20211116_3446_TMUAki_TMT10x_S_F7 181.72 151.14 18735000 31327000 726970 28813000 20425000 32300000 22895000 21937000 21313000 21697000 24268000 17449000 29222000 2179100 29624000 19686000 32457000 23045000 22819000 21857000 21200000 23319000 7 7 6 7 7 7 7 7 7 7 7 11576000 18569000 504350 17872000 10614000 23297000 13348000 13864000 13330000 13491000 14384000 10782000 17325000 1416300 18363000 10276000 23187000 13396000 14560000 13599000 13192000 13843000 4 4 4 4 4 4 4 4 4 4 4 7159300 12757000 222620 10941000 9811600 9002500 9546900 8073000 7983300 8205700 9884300 6667000 11897000 762770 11261000 9409700 9269800 9649300 8259000 8257500 8008600 9476100 3 3 2 3 3 3 3 3 3 3 3 3294400000 1627400000 1667000000 7727 1826 7203 41250;41251;41252;41253;41254 49590;49591;49592;49593;49594;49595;49596 49596 7 GYAYTFITEDQAR Unmodified 1533.71 0.70997257 2049 Q7L014 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 0 0 0 0 By MS/MS By MS/MS 4.29 0.7 1 3 3 3 4 57.548 57.563 2;3 6.2754E-55 17933 20211116_3442_TMUAki_TMT10x_S_F4 315.5 288.53 22247000 36740000 136790 38085000 27746000 34253000 23837000 33081000 31802000 32496000 32067000 20715000 34287000 1981000 38700000 26510000 35105000 24630000 33676000 32014000 31762000 30926000 7 7 4 7 7 7 7 7 7 7 7 7240200 11668000 61680 12378000 11339000 19221000 10024000 11554000 10736000 10845000 10460000 6741800 10891000 715150 12680000 10843000 18987000 10258000 12113000 10881000 10621000 10099000 2 2 2 2 2 2 2 2 2 2 2 15007000 25072000 75106 25707000 16407000 15032000 13814000 21528000 21066000 21651000 21607000 13973000 23397000 1265900 26021000 15667000 16118000 14372000 21564000 21132000 21141000 20827000 5 5 2 5 5 5 5 5 5 5 5 2547500000 1210100000 1337400000 7728 2049 7204 41255;41256;41257;41258;41259;41260;41261 49597;49598;49599;49600;49601;49602;49603;49604 49599 8 GYAYVEFENPDEAEK Unmodified 1759.7577 0.75771063 1785 Q15287;Q15287-3;Q15287-2 RNPS1 RNA-binding protein with serine-rich domain 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.4 1.08 4 4 4 3 7 8 58.912 58.716 2;3 2.9928E-72 19646 20211116_3439_TMUAki_TMT10x_S_F1 327.6 306.37 106860000 175260000 701770 175260000 123640000 155250000 117190000 125860000 123390000 118780000 138670000 99500000 163530000 8859900 178490000 118410000 158730000 119400000 129240000 125800000 116300000 133300000 23 23 11 23 23 23 23 23 23 23 23 52507000 81322000 372820 83748000 62643000 102620000 62496000 60194000 59660000 57263000 65748000 48891000 75891000 4702700 85548000 60075000 102430000 63312000 63254000 61034000 56046000 63237000 10 10 5 10 10 10 10 10 10 10 10 54353000 93936000 328950 91507000 60995000 52629000 54690000 65666000 63729000 61518000 72920000 50609000 87643000 4157300 92942000 58334000 56306000 56084000 65983000 64763000 60252000 70059000 13 13 6 13 13 13 13 13 13 13 13 13086000000 6965600000 6120000000 7729 1785 7205 41262;41263;41264;41265;41266;41267;41268;41269;41270;41271;41272;41273;41274;41275;41276 49605;49606;49607;49608;49609;49610;49611;49612;49613;49614;49615;49616;49617;49618;49619;49620;49621;49622;49623;49624;49625;49626;49627 49616 23 GYCYVEFKEEK Unmodified 1450.6439 0.64386684 1753 Q15020;Q15020-4 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 0 0 0 1 By MS/MS 5.5 0.5 1 1 2 48.947 49.115 3 6.2774E-06 13192 20211116_3444_TMUAki_TMT10x_S_F5 116.24 93.059 14386000 22413000 59063 24978000 14084000 11790000 11366000 17826000 16727000 16289000 18648000 13394000 20923000 1200800 25103000 13437000 12960000 11837000 17773000 16850000 15972000 17930000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14386000 22413000 59063 24978000 14084000 11790000 11366000 17826000 16727000 16289000 18648000 13394000 20923000 1200800 25103000 13437000 12960000 11837000 17773000 16850000 15972000 17930000 3 3 1 3 3 3 3 3 3 3 3 777320000 0 777320000 7730 1753 7206 41277;41278 49628;49629;49630 49629 3 GYDDRDYYSR Unmodified 1308.5371 0.53709359 1389 P62995;P62995-3 TRA2B Transformer-2 protein homolog beta yes no 0 0 0 1 By MS/MS By matching 2 0.816 1 1 1 2 1 31.158 30.918 3 4.566E-09 6388 20211116_3428_TMUAki_TMT10x_P_F1 137.01 118.26 471210 775610 12751 837080 2246000 984800 558620 476500 653560 439990 739100 438840 723960 75806 851830 2111900 982710 657800 509030 663770 431220 710330 1 1 1 1 1 1 1 1 1 1 1 471210 775610 12751 837080 2246000 984800 558620 476500 653560 439990 739100 438840 723960 75806 851830 2111900 982710 657800 509030 663770 431220 710330 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 161450000 80556000 80890000 7731 1389 7207 41279;41280;41281 49631;49632 49631 2 GYDRYEDYDYR Unmodified 1513.611 0.61098681 1650 Q13595;Q13595-4;Q13595-3 TRA2A Transformer-2 protein homolog alpha yes no 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 36.386 36.251 3 2.1169E-11 9991 20211116_3429_TMUAki_TMT10x_P_F2 171.05 153.24 2276200 3480900 27698 5825600 5677300 4548100 2914600 4284500 5868900 2908400 4230200 2119500 3256800 253280 5758300 5375300 4706200 3192300 4328300 5783100 2897200 4131400 4 4 3 4 4 4 4 4 4 4 4 1066600 1579300 14646 2620500 4820000 3694600 1879300 1887800 2608900 1267700 1765800 993230 1477600 154650 2615900 4548600 3656900 2082600 1992000 2592300 1263600 1729500 2 2 2 2 2 2 2 2 2 2 2 1209600 1901500 13052 3205100 857310 853560 1035300 2396700 3259900 1640700 2464400 1126300 1779200 98631 3142500 826720 1049300 1109700 2336300 3190800 1633500 2401900 2 2 1 2 2 2 2 2 2 2 2 449570000 319150000 130420000 7732 1650 7208 41282;41283;41284;41285 49633;49634;49635;49636 49634 4 GYDVDFPR Unmodified 967.43995 0.43994572 1525 Q06210;Q06210-2;O94808 GFPT1;GFPT2 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1;Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2 yes no 0 0 0 0 By MS/MS 3 0 1 1 46.751 46.749 2 0.015616 14668 20211116_3430_TMUAki_TMT10x_P_F3 73.26 56.333 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7733 1525 7209 41286 49637 49637 1 GYDVIAQAQSGTGK Unmodified 1393.6838 0.68375782 1277;1697 P60842;P60842-2;Q14240;Q14240-2 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS 5.8 0.748 4 4 2 5 5 47.793 48.02 2;3 1.576E-72 12981 20211116_3445_TMUAki_TMT10x_S_F6 333.58 282.78 43835000 64452000 264040 84072000 95472000 74179000 46016000 52792000 55873000 43554000 62921000 40813000 60214000 4147500 84233000 90286000 75698000 49567000 54478000 56660000 42918000 60479000 13 13 6 13 13 13 13 13 13 13 13 26677000 39087000 206740 49085000 79983000 61297000 31371000 32439000 35017000 26910000 38349000 24837000 36509000 2829100 49551000 75461000 61043000 34476000 34272000 35583000 26510000 36891000 8 8 4 8 8 8 8 8 8 8 8 17158000 25366000 57297 34987000 15489000 12882000 14644000 20354000 20856000 16644000 24572000 15976000 23705000 1318400 34682000 14825000 14655000 15091000 20206000 21077000 16408000 23588000 5 5 2 5 5 5 5 5 5 5 5 6287900000 3808300000 2479500000 7734 1277;1697 7210 41287;41288;41289;41290;41291;41292;41293;41294;41295;41296 49638;49639;49640;49641;49642;49643;49644;49645;49646;49647;49648;49649;49650 49649 13 GYDYGPHFQGILEASLEGDSGR Unmodified 2367.0768 0.076753356 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 3.89 1.2 1 3 2 2 1 5 4 70.142 70.028 3 2.3887E-32 24318 20211116_3430_TMUAki_TMT10x_P_F3 166.38 156.28 34970000 58807000 160450 57589000 33448000 45656000 38668000 30132000 29797000 30012000 38811000 32560000 54868000 2717100 58658000 32201000 46899000 38675000 31416000 31021000 29316000 37161000 13 13 4 13 13 13 13 13 13 13 13 12623000 19925000 0 19261000 10967000 20393000 12842000 11336000 10657000 11090000 12759000 11752000 18590000 818940 19714000 10558000 20502000 12861000 11975000 11011000 10841000 12243000 5 5 0 5 5 5 5 5 5 5 5 22347000 38881000 160450 38327000 22481000 25263000 25825000 18796000 19140000 18922000 26052000 20808000 36278000 1898200 38944000 21643000 26397000 25814000 19441000 20010000 18475000 24917000 8 8 4 8 8 8 8 8 8 8 8 6233200000 2711200000 3522000000 7735 1092 7211 41297;41298;41299;41300;41301;41302;41303;41304;41305 49651;49652;49653;49654;49655;49656;49657;49658;49659;49660;49661;49662;49663;49664;49665 49654 15 GYEEVHVPALKPKPFGSEEQLLPVEK Unmodified 2919.5382 0.53820979 352 O75643;O75643-2 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 0 0 0 2 By MS/MS By MS/MS 7 0.894 2 1 2 2 3 62.896 63.026 5 4.0394E-08 19191 20211116_3445_TMUAki_TMT10x_S_F6 84.946 72.75 15798000 26455000 84936 26569000 15803000 17842000 17444000 13813000 14339000 14528000 18284000 14710000 24686000 1384800 26966000 15199000 18624000 17512000 14269000 14863000 14160000 17516000 3 3 2 3 3 3 3 3 3 3 3 4852500 7287000 0 7112400 4689700 8036200 5755800 3898000 4276100 4019100 4964400 4518200 6798900 395850 7281900 4523300 8036800 5736800 4175700 4439400 3920300 4767600 1 1 0 1 1 1 1 1 1 1 1 10945000 19168000 84936 19457000 11113000 9805300 11688000 9915100 10063000 10509000 13320000 10192000 17887000 988940 19685000 10675000 10587000 11775000 10093000 10424000 10239000 12748000 2 2 2 2 2 2 2 2 2 2 2 7410200000 3151100000 4259200000 7736 352 7212 41306;41307;41308;41309;41310 49666;49667;49668 49667 3 GYELLFQPEVVR Unmodified 1448.7664 0.76636524 284 O60716;O60716-3;O60716-2;O60716-6;O60716-5;O60716-7;O60716-9;O60716-8;O60716-10;O60716-12;O60716-14;O60716-11;O60716-13;O60716-16;O60716-15;O60716-4;O60716-23;O60716-22;O60716-24;O60716-17;O60716-20;O60716-18;O60716-19;O60716-21;O60716-27;O60716-29;O60716-25;O60716-28;O60716-31;O60716-32;O60716-30;O60716-26 CTNND1 Catenin delta-1 yes no 0 0 0 0 By MS/MS 7 0 1 1 71.475 71.718 2 0.0026739 24779 20211116_3446_TMUAki_TMT10x_S_F7 72.652 40.521 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7737 284 7213 41311 49669 49669 1 GYEVIYLTEPVDEYCIQALPEFDGK Unmodified 2947.3837 0.38374256 672 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 4 2 3 3 80.353 80.335 3;4 7.5512E-08 28352 20211116_3439_TMUAki_TMT10x_S_F1 90.534 76.662 4294800 6718400 30293 6866700 4755800 5552900 4763700 2761600 2714600 3148100 4223300 3999100 6269600 345830 6975100 4561900 5675300 4768100 2960300 2904900 3058700 4027400 3 3 1 3 3 3 3 3 3 3 3 2716300 3577100 30293 3947000 2349500 3707400 2434600 1612400 1338600 1643500 2026300 2529400 3339200 248300 3996900 2256800 3744500 2431100 1746000 1434200 1603800 1933400 1 1 1 1 1 1 1 1 1 1 1 1578500 3141400 0 2919700 2406200 1845600 2329100 1149300 1376000 1504600 2197000 1469700 2930400 97538 2978200 2305100 1930800 2337000 1214300 1470700 1454900 2094000 2 2 0 2 2 2 2 2 2 2 2 2813300000 1585700000 1227600000 7738 672 7214 41312;41313;41314;41315;41316;41317 49670;49671;49672 49671 3 GYFEYIEENK Unmodified 1290.5768 0.57683314 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 By MS/MS By MS/MS 3.61 1.66 3 4 4 4 4 4 12 11 64.234 64.118 2;3 2.7531E-11 21432 20211116_3429_TMUAki_TMT10x_P_F2 213.53 176.42 295770000 468780000 743210 530330000 325050000 350390000 297340000 215010000 246210000 255430000 329240000 275370000 437650000 21943000 533990000 310780000 365010000 301470000 226650000 255660000 247800000 315030000 27 27 9 27 27 27 27 27 27 27 27 144220000 217970000 443370 244960000 171580000 232030000 153420000 100280000 116940000 120050000 153600000 134270000 203490000 11251000 247800000 164000000 234210000 155440000 109200000 121860000 116430000 147040000 15 15 6 15 15 15 15 15 15 15 15 151550000 250810000 299840 285370000 153470000 118360000 143920000 114730000 129270000 135380000 175640000 141100000 234160000 10692000 286190000 146790000 130800000 146030000 117450000 133800000 131370000 168000000 12 12 3 12 12 12 12 12 12 12 12 58124000000 32594000000 25531000000 7739 1474 7215 41318;41319;41320;41321;41322;41323;41324;41325;41326;41327;41328;41329;41330;41331;41332;41333;41334;41335;41336;41337;41338;41339;41340 49673;49674;49675;49676;49677;49678;49679;49680;49681;49682;49683;49684;49685;49686;49687;49688;49689;49690;49691;49692;49693;49694;49695;49696;49697;49698;49699;49700 49677 28 GYFEYIEENKYSR Unmodified 1696.7733 0.77330111 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 1 By MS/MS By MS/MS 4.5 1.12 2 2 2 2 4 4 57.32 57.308 3 3.2729E-06 17323 20211116_3431_TMUAki_TMT10x_P_F4 110.44 90.684 273960000 518510000 1170700 429370000 522660000 895680000 474390000 918200000 843230000 794400000 579780000 255060000 483490000 20758000 451290000 499770000 884200000 495140000 928720000 832360000 780960000 567450000 15 15 7 15 15 15 15 15 15 15 15 175050000 318510000 740300 262810000 318730000 697500000 356980000 540950000 501010000 470780000 338150000 162970000 296990000 14543000 278550000 306450000 680240000 364550000 555800000 497610000 462680000 331240000 9 9 5 9 9 9 9 9 9 9 9 98913000 200000000 430370 166550000 203930000 198180000 117420000 377250000 342230000 323620000 241630000 92094000 186500000 6214600 172750000 193330000 203960000 130580000 372920000 334750000 318280000 236210000 6 6 2 6 6 6 6 6 6 6 6 16903000000 8704900000 8198500000 7740 1474 7216 41341;41342;41343;41344;41345;41346;41347;41348 49701;49702;49703;49704;49705;49706;49707;49708;49709;49710;49711;49712;49713;49714;49715 49702 15 GYGFGLIK Unmodified 853.46979 0.46978929 760 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 61.345 61.147 2 0.00042752 20098 20211116_3429_TMUAki_TMT10x_P_F2 146.21 89.109 47292000 83697000 557790 74380000 78845000 101950000 58696000 105200000 100680000 78948000 80678000 44038000 78064000 4865300 76950000 75126000 102230000 61891000 106010000 99881000 78187000 78447000 6 6 5 6 6 6 6 6 6 6 6 27052000 44331000 344580 39826000 56242000 80318000 42507000 58006000 56103000 43610000 44521000 25191000 41349000 2972800 41553000 53603000 78824000 44255000 59672000 56069000 43185000 43306000 3 3 3 3 3 3 3 3 3 3 3 20241000 39366000 213210 34554000 22603000 21629000 16189000 47197000 44581000 35338000 36157000 18847000 36715000 1892500 35397000 21523000 23406000 17636000 46342000 43812000 35001000 35140000 3 3 2 3 3 3 3 3 3 3 3 2749800000 1722800000 1027000000 7741 760 7217 41349;41350;41351;41352 49716;49717;49718;49719;49720;49721 49717 6 GYGFIEYEK Unmodified 1104.5128 0.51277632 3124 Q9UHX1-6;Q9UHX1-5;Q9UHX1-4;Q9UHX1-2;Q9UHX1;Q9UHX1-3 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 56.48 56.579 2 5.9391E-05 17227 20211116_3433_TMUAki_TMT10x_P_F5 146.81 116.24 32315000 55058000 226100 57200000 48046000 57963000 38781000 44880000 45240000 39163000 43349000 30088000 51383000 2911800 58214000 45837000 58708000 40022000 46120000 45674000 38484000 41876000 6 6 3 6 6 6 6 6 6 6 6 19727000 33342000 186820 34468000 36136000 47648000 27881000 27944000 28223000 23884000 25649000 18368000 31116000 1916800 35280000 34445000 47285000 28723000 29284000 28606000 23494000 24822000 3 3 2 3 3 3 3 3 3 3 3 12587000 21716000 39276 22733000 11910000 10315000 10900000 16937000 17016000 15279000 17700000 11720000 20267000 994980 22933000 11392000 11423000 11298000 16836000 17068000 14990000 17053000 3 3 1 3 3 3 3 3 3 3 3 2077200000 1605700000 471430000 7742 3124 7218 41353;41354;41355 49722;49723;49724;49725;49726;49727 49724 6 GYGFITFSDSECAK Unmodified 1580.6817 0.68170891 1711 Q14498;Q14498-2;Q14498-3 RBM39 RNA-binding protein 39 yes no 0 0 0 0 By MS/MS By MS/MS 5.25 0.433 3 1 1 3 65.11 65.111 2;3 3.3037E-60 20042 20211116_3445_TMUAki_TMT10x_S_F6 297.64 271.98 4931400 7968300 0 8370600 5284900 4138500 5220000 4200100 4174000 4585300 5778300 4591200 7436800 360720 8447700 5062300 4478400 5265900 4278800 4349100 4462400 5524500 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4931400 7968300 0 8370600 5284900 4138500 5220000 4200100 4174000 4585300 5778300 4591200 7436800 360720 8447700 5062300 4478400 5265900 4278800 4349100 4462400 5524500 2 2 0 2 2 2 2 2 2 2 2 944110000 0 944110000 7743 1711 7219 41356;41357;41358;41359 49728;49729;49730;49731 49731 4 GYGFITFSDSECAKK Unmodified 1708.7767 0.77667193 1711 Q14498;Q14498-2;Q14498-3 RBM39 RNA-binding protein 39 yes no 0 0 0 1 By MS/MS By MS/MS 7 0.707 1 2 1 3 1 56.534 57.003 3 1.875E-14 16985 20211116_3436_TMUAki_TMT10x_P_F8 153.7 140.5 50594000 80692000 569780 88406000 69883000 87455000 55689000 57955000 56523000 58370000 63314000 47112000 75323000 4913000 89630000 66679000 88489000 57256000 60426000 57707000 56990000 60866000 5 5 3 5 5 5 5 5 5 5 5 36686000 57486000 484830 63923000 55825000 75678000 43389000 41725000 40859000 42427000 45026000 34161000 53665000 3704400 64934000 53240000 75607000 44584000 44158000 41825000 41407000 43306000 3 3 2 3 3 3 3 3 3 3 3 13908000 23206000 84947 24483000 14058000 11777000 12300000 16230000 15664000 15943000 18288000 12951000 21658000 1208600 24696000 13439000 12882000 12672000 16268000 15882000 15583000 17560000 2 2 1 2 2 2 2 2 2 2 2 4735000000 3304300000 1430700000 7744 1711 7220 41360;41361;41362;41363 49732;49733;49734;49735;49736;49737 49735 6 GYGFVDFDSPAAAQK Unmodified 1571.7256 0.72562264 854 P29558;Q6XE24;P29558-2;Q6XE24-3;Q6XE24-4;Q6XE24-5;Q6XE24-2 RBMS1;RBMS3 RNA-binding motif, single-stranded-interacting protein 1;RNA-binding motif, single-stranded-interacting protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 63.926 63.892 3 1.005E-06 19596 20211116_3445_TMUAki_TMT10x_S_F6 109 78.447 7610200 13485000 244900 13196000 8981600 7371100 7197800 9313500 8508300 8818900 10039000 7087600 12582000 878380 13396000 8581900 7912200 7434800 9356500 8652700 8633400 9637200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7610200 13485000 244900 13196000 8981600 7371100 7197800 9313500 8508300 8818900 10039000 7087600 12582000 878380 13396000 8581900 7912200 7434800 9356500 8652700 8633400 9637200 2 2 2 2 2 2 2 2 2 2 2 451220000 0 451220000 7745 854 7221 41364;41365 49738;49739;49740 49740 3 GYGFVHFETQEAAER Unmodified 1739.7903 0.79034816 634 P11940;P11940-2 PABPC1 Polyadenylate-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.78 1.65 2 2 4 4 3 2 1 9 9 46.539 46.563 2;3 9.3088E-39 12956 20211116_3431_TMUAki_TMT10x_P_F4 256.95 220.61 104370000 168510000 901760 191530000 166720000 172940000 116650000 134210000 133020000 119660000 143510000 97185000 157320000 8888000 193490000 158620000 176460000 121450000 137980000 134980000 117460000 138120000 31 31 13 31 31 31 31 31 31 31 31 60885000 95825000 401780 110200000 124850000 136020000 76666000 78989000 76462000 68711000 81819000 56691000 89469000 5260000 111800000 118510000 135690000 80279000 82881000 77986000 67530000 78762000 16 16 8 16 16 16 16 16 16 16 16 43489000 72681000 499990 81331000 41864000 36926000 39983000 55222000 56555000 50947000 61695000 40494000 67852000 3628000 81696000 40105000 40768000 41168000 55095000 56992000 49934000 59356000 15 15 5 15 15 15 15 15 15 15 15 26457000000 13981000000 12477000000 7746 634 7222 41366;41367;41368;41369;41370;41371;41372;41373;41374;41375;41376;41377;41378;41379;41380;41381;41382;41383 49741;49742;49743;49744;49745;49746;49747;49748;49749;49750;49751;49752;49753;49754;49755;49756;49757;49758;49759;49760;49761;49762;49763;49764;49765;49766;49767;49768;49769;49770;49771;49772 49752 32 GYGFVSFKDPSDYVR Unmodified 1735.8206 0.82058566 2661 Q9BTD8;Q9BTD8-4;Q9BTD8-2;Q9BTD8-3 RBM42 RNA-binding protein 42 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 63.568 63.547 3 2.3025E-07 19065 20211116_3447_TMUAki_TMT10x_S_F8 119.58 108.31 44995000 77070000 207300 71334000 57023000 64952000 53265000 54995000 53366000 53868000 57894000 41896000 71893000 4048900 73082000 54591000 66338000 54229000 56383000 54447000 52657000 55708000 6 6 4 6 6 6 6 6 6 6 6 17708000 27822000 29214 26862000 20879000 35133000 20963000 21503000 21672000 21463000 21254000 16488000 25958000 1534300 27595000 20024000 34975000 21281000 22549000 22002000 20963000 20516000 2 2 1 2 2 2 2 2 2 2 2 27286000 49247000 178080 44472000 36143000 29819000 32302000 33492000 31694000 32405000 36640000 25407000 45935000 2514600 45487000 34568000 31364000 32948000 33834000 32445000 31693000 35192000 4 4 3 4 4 4 4 4 4 4 4 4112400000 2034500000 2077900000 7747 2661 7223 41384;41385;41386;41387 49773;49774;49775;49776;49777;49778 49777 6 GYGGNRFESR Unmodified 1141.5265 0.52646932 1673 Q14011;Q14011-2;Q14011-3 CIRBP Cold-inducible RNA-binding protein yes no 0 0 0 1 By MS/MS 5 0 1 1 27.689 27.617 3 0.00082476 5758 20211116_3433_TMUAki_TMT10x_P_F5 87.942 66.79 529450 766870 14725 741510 638460 777600 485880 330160 346790 348900 528190 493080 715480 59145 758800 609240 779880 496520 358830 365320 339980 503910 1 1 1 1 1 1 1 1 1 1 1 529450 766870 14725 741510 638460 777600 485880 330160 346790 348900 528190 493080 715480 59145 758800 609240 779880 496520 358830 365320 339980 503910 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13339000 13339000 0 7748 1673 7224 41388 49779 49779 1 GYHYATCLEGALK Unmodified 1481.6973 0.6972994 1525 Q06210;Q06210-2 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 3 1 2 48.33 48.954 3 6.7369E-06 15452 20211116_3446_TMUAki_TMT10x_S_F7 95.417 73.86 6863700 10732000 98580 14602000 14241000 18372000 11457000 9771900 9295900 9049800 8954900 6391500 10028000 764240 14679000 13591000 18290000 11700000 10348000 9539500 8868200 8649000 1 1 1 1 1 1 1 1 1 1 1 6863700 10732000 98580 14602000 14241000 18372000 11457000 9771900 9295900 9049800 8954900 6391500 10028000 764240 14679000 13591000 18290000 11700000 10348000 9539500 8868200 8649000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 961650000 961650000 0 7749 1525 7225 41389;41390;41391 49780;49781;49782 49781 3 GYIFLEYASPAHAVDAVK Unmodified 1949.9887 0.98871362 1249 P55884;P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 0 0 0 0 By MS/MS By MS/MS 5 2.9 1 1 2 1 4 1 70.202 70.255 3 1.2928E-07 22237 20211116_3428_TMUAki_TMT10x_P_F1 101.96 82.378 23279000 38270000 142630 36205000 25570000 44112000 26978000 15777000 14312000 19498000 25980000 21675000 35703000 1962500 37199000 24553000 43814000 26900000 17582000 15528000 18890000 24700000 4 4 2 4 4 4 4 4 4 4 4 23279000 38270000 142630 36205000 25570000 44112000 26978000 15777000 14312000 19498000 25980000 21675000 35703000 1962500 37199000 24553000 43814000 26900000 17582000 15528000 18890000 24700000 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2701800000 2701800000 0 7750 1249 7226 41392;41393;41394;41395;41396 49783;49784;49785;49786;49787;49788 49783 6 GYIGVVNR Unmodified 876.48175 0.48175096 1140;1518 P50570;P50570-3;P50570-2;P50570-5;P50570-4;Q05193;Q05193-5;Q05193-3;Q05193-2 DNM2;DNM1 Dynamin-2;Dynamin-1 no no 0 0 0 0 By MS/MS By MS/MS 6.83 0.898 3 1 2 3 3 35.27 35.558 2 0.008584 8365 20211116_3436_TMUAki_TMT10x_P_F8 86.121 54.004 1561200 2469900 29200 2679600 2701800 2481900 1809200 1448800 1574900 1453400 1964800 1453800 2305400 171620 2715900 2569900 2517400 1874600 1525300 1626300 1419300 1883300 5 5 4 5 5 5 5 5 5 5 5 1213200 1898300 19314 2061000 2334400 2159600 1412600 1113700 1205400 1117900 1508300 1129800 1771900 134290 2092500 2216300 2170500 1474600 1185300 1246100 1091600 1445700 3 3 3 3 3 3 3 3 3 3 3 347990 571610 9886 618610 367480 322250 396620 335100 369500 335490 456430 324080 533540 37336 623330 353620 346860 399950 340070 380170 327640 437610 2 2 1 2 2 2 2 2 2 2 2 125650000 85208000 40443000 7751 1140;1518 7227 41397;41398;41399;41400;41401;41402 49789;49790;49791;49792;49793;49794 49791 6 GYISPYFINTSK Unmodified 1388.6976 0.69761697 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3.65 2.68 4 4 4 1 4 8 9 64.127 63.967 2;3 3.3455E-49 21234 20211116_3429_TMUAki_TMT10x_P_F2 314.35 271.1 205010000 344850000 1136100 362540000 238930000 316630000 194120000 234790000 221500000 233820000 242050000 190890000 321850000 18232000 367910000 228020000 323550000 200090000 242820000 224870000 228400000 232860000 21 21 15 21 21 21 21 21 21 21 21 105480000 175470000 735180 183100000 142610000 228810000 111410000 120500000 118150000 119450000 125320000 98216000 163760000 9696200 186940000 135990000 227840000 114850000 127950000 120160000 116700000 120670000 10 10 7 10 10 10 10 10 10 10 10 99526000 169380000 400940 179440000 96314000 87816000 82706000 114300000 103350000 114370000 116730000 92671000 158090000 8535900 180980000 92030000 95708000 85243000 114870000 104720000 111700000 112190000 11 11 8 11 11 11 11 11 11 11 11 73016000000 41721000000 31295000000 7752 613 7228 41403;41404;41405;41406;41407;41408;41409;41410;41411;41412;41413;41414;41415;41416;41417;41418;41419 49795;49796;49797;49798;49799;49800;49801;49802;49803;49804;49805;49806;49807;49808;49809;49810;49811;49812;49813;49814;49815 49798 21 GYKHTLNQIDSVK Unmodified 1501.7889 0.7888916 41 CON__P12763 yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 38.571 38.879 4 4.2256E-09 8993 20211116_3447_TMUAki_TMT10x_S_F8 128.9 108.79 + 2047700 3378200 17621 3914600 4423800 4380100 2878400 5373400 5778200 3214500 3834000 1906700 3154200 211380 3962600 4203400 4455800 3090300 5348500 5682500 3228400 3758800 5 5 3 5 5 5 5 5 5 5 5 1311400 2014600 5332.9 2446000 3574400 3657400 2025100 2772200 2575300 1822400 2154300 1221000 1881400 137300 2482900 3388200 3631300 2152100 2834900 2581000 1818900 2091200 3 3 1 3 3 3 3 3 3 3 3 736300 1363600 12288 1468700 849310 722770 853350 2601200 3202900 1392200 1679700 685660 1272800 74079 1479700 815200 824530 938110 2513700 3101500 1409500 1667500 2 2 2 2 2 2 2 2 2 2 2 233900000 61587000 172310000 7753 41 7229 41420;41421 49816;49817;49818;49819;49820 49820 5 GYLADPAKFPEAR Unmodified 1433.7303 0.73031409 3044 Q9P015 MRPL15 39S ribosomal protein L15, mitochondrial yes yes 0 0 0 1 By MS/MS 6 0 1 1 48.372 48.529 3 0.030161 13201 20211116_3445_TMUAki_TMT10x_S_F6 52.008 29.129 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7754 3044 7230 41422 49821 49821 1 GYLAVAVVK Unmodified 918.55385 0.55385327 49 CON__Q29443;CON__Q0IIK2 yes no 0 0 0 0 By MS/MS 2 0 1 1 57.154 56.933 2 3.3247E-05 17147 20211116_3440_TMUAki_TMT10x_S_F2 121.29 100.63 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7755 49 7231 41423 49822 49822 1 GYLDDPTVPR Unmodified 1131.556 0.55603812 626 P11413;P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 43.06 42.993 2 1.7786E-11 14278 20211116_3441_TMUAki_TMT10x_S_F3 215.38 166.82 6371100 9848100 17967 13246000 9757600 8428700 6539300 7934700 9137800 7048300 9396000 5931700 9202000 515970 13201000 9271200 8872600 6881800 8065800 9191600 6920200 9056000 5 5 2 5 5 5 5 5 5 5 5 2206800 3323000 5956.2 4538400 6425200 5491900 3262000 2833300 3211800 2550100 3173300 2054500 3105300 208960 4558300 6079100 5476200 3472600 3006400 3268300 2502200 3062300 2 2 1 2 2 2 2 2 2 2 2 4164300 6525100 12011 8707800 3332400 2936800 3277300 5101400 5925900 4498200 6222700 3877200 6096700 307000 8642900 3192100 3396400 3409200 5059500 5923200 4418000 5993600 3 3 1 3 3 3 3 3 3 3 3 481380000 244300000 237090000 7756 626 7232 41424;41425;41426;41427;41428;41429 49823;49824;49825;49826;49827;49828 49827 6 GYLGPEQLPDCLK Unmodified 1488.7283 0.72826518 989 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4.85 0.948 1 4 4 4 7 6 63.063 63.092 2;3 1.7627E-29 19943 20211116_3433_TMUAki_TMT10x_P_F5 241.03 182.79 109670000 179400000 847830 190210000 129120000 159930000 111850000 117540000 106620000 120180000 133640000 102110000 167440000 9412800 192830000 123380000 163840000 114200000 121720000 109660000 117260000 128080000 15 15 7 15 15 15 15 15 15 15 15 55322000 87098000 586090 92608000 73621000 111960000 68263000 58026000 52887000 60445000 64897000 51511000 81292000 4946300 94376000 70464000 111650000 69047000 61791000 54902000 58934000 62232000 7 7 3 7 7 7 7 7 7 7 7 54347000 92305000 261740 97603000 55502000 47970000 43589000 59513000 53734000 59733000 68743000 50602000 86150000 4466500 98455000 52915000 52189000 45152000 59933000 54754000 58329000 65849000 8 8 4 8 8 8 8 8 8 8 8 20013000000 10996000000 9016900000 7757 989 7233 41430;41431;41432;41433;41434;41435;41436;41437;41438;41439;41440;41441;41442 49829;49830;49831;49832;49833;49834;49835;49836;49837;49838;49839;49840;49841;49842;49843;49844 49832 16 GYLISGSSYAR Unmodified 1172.5826 0.58258722 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 5 3.29 2 1 2 2 3 43.464 43.461 2 1.5568E-48 11412 20211116_3436_TMUAki_TMT10x_P_F8 314.39 285.24 7847300 12822000 16929 17167000 12219000 12501000 6160400 10755000 11197000 9417800 11798000 7306400 11981000 685700 17136000 11563000 12984000 6721500 10983000 11192000 9253000 11363000 6 6 3 6 6 6 6 6 6 6 6 3037600 5063200 6877 6753400 9185800 9605600 3329400 4179600 4337900 3608100 4461000 2828400 4730800 343590 6812800 8660900 9487700 3714600 4506200 4373300 3547400 4299500 2 2 1 2 2 2 2 2 2 2 2 4809700 7759000 10052 10414000 3033600 2895300 2830900 6575300 6859200 5809800 7337100 4478100 7249900 342110 10324000 2901600 3496000 3006800 6476700 6818700 5705700 7063100 4 4 2 4 4 4 4 4 4 4 4 817250000 547100000 270140000 7758 2116 7234 41443;41444;41445;41446;41447 49845;49846;49847;49848;49849;49850;49851 49846 7 GYLPSHYER Unmodified 1120.5302 0.53015772 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 31.973 31.913 3 1.1321E-05 7156 20211116_3431_TMUAki_TMT10x_P_F4 128.36 109.58 994870 1586400 12737 1480200 1814200 1837600 1149600 828350 928000 793540 1168800 926420 1479900 105830 1522900 1723600 1827300 1194000 892110 962330 776450 1120000 1 1 1 1 1 1 1 1 1 1 1 994870 1586400 12737 1480200 1814200 1837600 1149600 828350 928000 793540 1168800 926420 1479900 105830 1522900 1723600 1827300 1194000 892110 962330 776450 1120000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 135610000 135610000 0 7759 1997 7235 41448;41449 49852;49853 49852 2 GYLVTQDELDQTLEEFK Unmodified 2026.9735 0.97351706 732 P19388 POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1 yes yes 0 0 0 0 By MS/MS 1.5 0.5 1 1 2 79.804 79.777 3 3.1281E-08 28131 20211116_3439_TMUAki_TMT10x_S_F1 117.4 105.71 6285100 10774000 21672 10669000 7215100 7296500 9545300 4890400 4992400 5832900 7661300 5851800 10053000 507440 10841000 6975100 7587200 9419500 5121800 5372900 5657800 7308000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6285100 10774000 21672 10669000 7215100 7296500 9545300 4890400 4992400 5832900 7661300 5851800 10053000 507440 10841000 6975100 7587200 9419500 5121800 5372900 5657800 7308000 2 2 1 2 2 2 2 2 2 2 2 912510000 0 912510000 7760 732 7236 41450;41451 49854;49855 49854 2 GYNATVLAYGQTGSGK Unmodified 1585.7736 0.77363546 416 O95239;O95239-2;Q2VIQ3 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 0 0 0 0 By MS/MS 8 0 1 1 50.201 50.288 3 2.155E-10 14243 20211116_3436_TMUAki_TMT10x_P_F8 121.45 98.328 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7761 416 7237 41452 49856 49856 1 GYNDDYYEESYFTTR Unmodified 1921.7643 0.76425257 1134 P50402 EMD Emerin yes yes 0 0 0 0 By MS/MS By MS/MS 2.4 0.8 1 1 3 3 2 57.649 57.407 2;3 0.00039679 19101 20211116_3430_TMUAki_TMT10x_P_F3 79.235 67.177 1379200 2267400 67312 2587000 2495200 3038300 1722900 1338200 1434700 1355700 1694900 1284700 2116900 192710 2623400 2377200 3029200 1779100 1446900 1481400 1323300 1626900 1 1 1 1 1 1 1 1 1 1 1 1379200 2267400 67312 2587000 2495200 3038300 1722900 1338200 1434700 1355700 1694900 1284700 2116900 192710 2623400 2377200 3029200 1779100 1446900 1481400 1323300 1626900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 627930000 627930000 0 7762 1134 7238 41453;41454;41455;41456;41457 49857;49858;49859;49860 49858 4 GYPHLCSICDLPVHSNK Unmodified 1995.9295 0.92950095 1026 P43243 MATR3 Matrin-3 yes yes 0 0 0 0 By MS/MS By MS/MS 4.7 2.61 1 2 2 1 2 2 6 4 46.857 46.906 4 8.2703E-22 12851 20211116_3436_TMUAki_TMT10x_P_F8 172.57 155.89 112830000 174390000 145730 233180000 297030000 231540000 130920000 138120000 136080000 108140000 152200000 105050000 162950000 11247000 233700000 280590000 233880000 141640000 144250000 138790000 106850000 146320000 12 12 4 12 12 12 12 12 12 12 12 90737000 137410000 75024 182430000 277140000 220110000 117370000 115560000 114060000 88978000 122020000 84482000 128390000 9797500 183500000 261690000 219560000 127310000 121980000 116460000 87996000 117460000 5 5 2 5 5 5 5 5 5 5 5 22095000 36983000 70705 50744000 19892000 11429000 13545000 22558000 22025000 19158000 30182000 20570000 34561000 1450000 50207000 18891000 14318000 14333000 22272000 22325000 18851000 28863000 7 7 2 7 7 7 7 7 7 7 7 10390000000 6961200000 3428300000 7763 1026 7239 41458;41459;41460;41461;41462;41463;41464;41465;41466;41467 49861;49862;49863;49864;49865;49866;49867;49868;49869;49870;49871 49864 11 GYPHWPAR Unmodified 982.47733 0.47733428 1165;336;2083 O75475;O75475-2;O75475-3;P51858;Q7Z4V5;Q7Z4V5-2;Q7Z4V5-4;Q7Z4V5-3 PSIP1;HDGF;HDGFRP2 PC4 and SFRS1-interacting protein;Hepatoma-derived growth factor;Hepatoma-derived growth factor-related protein 2 no no 0 0 0 0 By MS/MS By MS/MS 2.6 1.96 3 2 2 3 34.039 34.077 2;3 0.00017019 7608 20211116_3428_TMUAki_TMT10x_P_F1 140.12 129.25 1135300 1796600 25519 2533900 1720500 1245500 1301500 943860 1016200 1006400 1641800 1057300 1679100 122060 2513700 1640500 1341600 1333200 976750 1068500 980310 1564400 4 4 2 4 4 4 4 4 4 4 4 265040 417410 5973.8 617420 940770 581060 438270 212040 234950 241800 355110 246820 390240 37005 615200 889790 585900 464530 235110 252180 234920 338840 1 1 1 1 1 1 1 1 1 1 1 870300 1379100 19545 1916500 779770 664480 863190 731820 781280 764590 1286600 810450 1288900 85053 1898500 750700 755670 868670 741650 816330 745380 1225500 3 3 1 3 3 3 3 3 3 3 3 342500000 202510000 139990000 7764 336;1165;2083 7240 41468;41469;41470;41471;41472 49872;49873;49874;49875;49876 49872 5 GYPNERFELLTNFPR Unmodified 1851.9268 0.92678206 391 O94888 UBXN7 UBX domain-containing protein 7 yes yes 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 61.209 61.51 3 5.964E-11 18234 20211116_3447_TMUAki_TMT10x_S_F8 140.49 128.13 46973000 85496000 413770 74066000 55598000 88069000 56919000 51608000 43966000 47539000 59630000 43739000 79734000 4400800 76576000 53369000 88035000 57266000 54189000 45851000 46597000 57038000 3 3 3 3 3 3 3 3 3 3 3 38298000 69857000 252520 59436000 44852000 77939000 47456000 39035000 31738000 35501000 46281000 35661000 65145000 3502300 61647000 43087000 77383000 47514000 41545000 33492000 34817000 44195000 2 2 2 2 2 2 2 2 2 2 2 8674500 15639000 161250 14630000 10746000 10130000 9463000 12573000 12228000 12038000 13349000 8078000 14589000 898460 14929000 10281000 10652000 9751500 12644000 12359000 11779000 12843000 1 1 1 1 1 1 1 1 1 1 1 1762700000 1229100000 533690000 7765 391 7241 41473;41474;41475 49877;49878;49879 49879 3 GYPPEDIFNLVGK Unmodified 1447.7347 0.73473076 2921 Q9NR45 NANS Sialic acid synthase yes yes 0 0 0 0 By MS/MS By MS/MS 6 0.816 1 1 1 2 1 78.318 78.367 2;3 2.2934E-14 27599 20211116_3446_TMUAki_TMT10x_S_F7 166.93 139.19 6056400 10437000 8956.8 8979000 9199100 6979000 8690300 5225400 6048000 6396200 7746700 5638600 9733000 488250 9233100 8804000 7193700 8759700 5436400 6328700 6198600 7420400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6056400 10437000 8956.8 8979000 9199100 6979000 8690300 5225400 6048000 6396200 7746700 5638600 9733000 488250 9233100 8804000 7193700 8759700 5436400 6328700 6198600 7420400 2 2 1 2 2 2 2 2 2 2 2 663190000 0 663190000 7766 2921 7242 41476;41477;41478 49880;49881;49882;49883 49882 4 GYPPEDIFNLVGKK Unmodified 1575.8297 0.82969378 2921 Q9NR45 NANS Sialic acid synthase yes yes 0 0 0 1 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 71.489 71.434 3 2.4964E-19 22863 20211116_3436_TMUAki_TMT10x_P_F8 174.65 151.74 25012000 41852000 102350 37985000 31893000 48355000 28793000 35977000 33319000 34798000 33722000 23287000 39038000 1935200 39179000 30487000 48343000 29508000 37169000 33713000 34034000 32518000 3 3 2 3 3 3 3 3 3 3 3 17574000 29699000 21389 26723000 20953000 39005000 20254000 25385000 22669000 23271000 22735000 16360000 27702000 1194000 27656000 20053000 38672000 20656000 26434000 22958000 22814000 21929000 2 2 1 2 2 2 2 2 2 2 2 7438800 12153000 80964 11262000 10940000 9350800 8539000 10592000 10650000 11527000 10988000 6926900 11337000 741220 11523000 10434000 9671700 8852400 10735000 10755000 11220000 10589000 1 1 1 1 1 1 1 1 1 1 1 2028800000 1063900000 964900000 7767 2921 7243 41479;41480;41481 49884;49885;49886;49887 49884 4 GYSDRDGYGR Unmodified 1144.4897 0.48974946 969 P38159;P38159-2 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed yes no 0 0 0 1 By MS/MS 3 0 1 1 26.701 26.408 3 1.3723E-08 7665 20211116_3441_TMUAki_TMT10x_S_F3 166.69 145 307530 564430 3768.5 442520 384230 311430 434310 249590 258580 250850 365900 286360 526210 29920 458090 369900 323960 432480 256920 274560 244940 349640 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 307530 564430 3768.5 442520 384230 311430 434310 249590 258580 250850 365900 286360 526210 29920 458090 369900 323960 432480 256920 274560 244940 349640 2 2 1 2 2 2 2 2 2 2 2 7243800 0 7243800 7768 969 7244 41482 49888;49889 49889 2 GYSFSLTTFSPSGK Unmodified 1477.7089 0.70890994 807 P25787 PSMA2 Proteasome subunit alpha type-2 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 2 4 4 2 69.338 69.045 2;3 3.4637E-23 23928 20211116_3430_TMUAki_TMT10x_P_F3 186.46 149.35 22799000 35433000 275540 34884000 22119000 32033000 23935000 19247000 18925000 20456000 24442000 21230000 33061000 2097700 35584000 21268000 32521000 24029000 20251000 19668000 19929000 23407000 5 5 4 5 5 5 5 5 5 5 5 14415000 21388000 268630 21384000 13327000 23414000 15212000 11395000 11409000 12197000 15041000 13424000 19957000 1430200 21846000 12842000 23458000 15214000 12216000 11902000 11879000 14397000 3 3 3 3 3 3 3 3 3 3 3 8384600 14045000 6900.8 13500000 8791600 8618400 8723500 7852000 7515700 8259200 9400400 7806600 13104000 667450 13738000 8425900 9063800 8814800 8034300 7765600 8049600 9009900 2 2 1 2 2 2 2 2 2 2 2 2297200000 1303500000 993660000 7769 807 7245 41483;41484;41485;41486;41487;41488 49890;49891;49892;49893;49894;49895 49892 6 GYSFTTTAER Unmodified 1131.5197 0.51965261 1276;1406 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS 4.65 2.08 2 2 2 3 2 6 1 2 8 12 34.842 34.94 2 8.2505E-19 8835 20211116_3442_TMUAki_TMT10x_S_F4 245.99 182.43 53970000 79632000 466350 95930000 92959000 82486000 65670000 42821000 74927000 51858000 70220000 50252000 74366000 4295500 96512000 88454000 83969000 68325000 45810000 75654000 50275000 67884000 29 29 11 29 29 29 29 29 29 29 29 30078000 43181000 360210 52470000 81046000 55048000 34348000 25509000 41430000 28685000 38395000 28008000 40327000 3462200 52910000 76553000 55256000 37502000 27522000 41731000 27884000 37132000 8 8 5 8 8 8 8 8 8 8 8 23892000 36451000 106140 43461000 11913000 27438000 31321000 17312000 33497000 23173000 31825000 22245000 34039000 833390 43602000 11900000 28713000 30823000 18288000 33923000 22391000 30752000 21 21 6 21 21 21 21 21 21 21 21 25495000000 18097000000 7398800000 7770 1276;1406 7246 41489;41490;41491;41492;41493;41494;41495;41496;41497;41498;41499;41500;41501;41502;41503;41504;41505;41506;41507;41508 49896;49897;49898;49899;49900;49901;49902;49903;49904;49905;49906;49907;49908;49909;49910;49911;49912;49913;49914;49915;49916;49917;49918;49919;49920;49921;49922;49923;49924;49925;49926 49913 31 GYSFTTTAEREIVR Unmodified 1628.8158 0.81583463 1276;1406 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 0 1 By MS/MS By MS/MS 4.5 1.38 1 1 3 4 3 5 7 45.663 45.72 2;3 1.5411E-106 12906 20211116_3433_TMUAki_TMT10x_P_F5 346.96 295.8 39748000 66562000 99396 70383000 49456000 55587000 35517000 69883000 80951000 55239000 59413000 37007000 62124000 3224400 71311000 47056000 57862000 38162000 69892000 79601000 54553000 57981000 15 15 6 15 15 15 15 15 15 15 15 13448000 21883000 48932 22454000 19918000 29795000 15744000 24440000 28250000 18488000 19145000 12522000 20421000 1205500 22976000 18993000 29780000 16575000 24941000 27870000 18301000 18751000 4 4 3 4 4 4 4 4 4 4 4 26300000 44680000 50464 47929000 29538000 25792000 19773000 45442000 52701000 36752000 40268000 24486000 41703000 2018900 48335000 28063000 28083000 21587000 44951000 51732000 36252000 39230000 11 11 3 11 11 11 11 11 11 11 11 24027000000 11815000000 12212000000 7771 1276;1406 7247 41509;41510;41511;41512;41513;41514;41515;41516;41517;41518;41519;41520 49927;49928;49929;49930;49931;49932;49933;49934;49935;49936;49937;49938;49939;49940;49941;49942;49943 49930 17 GYSLNLIPPALISGEHLR Unmodified 1949.0734 0.0734463 2180 Q8N158 GPC2 Glypican-2;Secreted glypican-2 yes yes 0 0 0 0 By MS/MS 2 0 1 1 73.974 73.884 3 0.042026 24002 20211116_3440_TMUAki_TMT10x_S_F2 37.237 15.986 3779700 6777800 0 5327500 5276200 5432200 5305300 5453700 5827800 6036100 5346600 3518800 6319000 271590 5538900 5055800 5528000 5396000 5561300 5888900 5871200 5172500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3779700 6777800 0 5327500 5276200 5432200 5305300 5453700 5827800 6036100 5346600 3518800 6319000 271590 5538900 5055800 5528000 5396000 5561300 5888900 5871200 5172500 1 1 0 1 1 1 1 1 1 1 1 346000000 0 346000000 7772 2180 7248 41521 49944 49944 1 GYSLVSGGTDNHLVLVDLRPK Unmodified 2239.1961 0.19608063 915 P34897;P34897-3;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 5 3.29 2 1 2 2 3 60.952 61.034 4 3.1148E-44 20629 20211116_3439_TMUAki_TMT10x_S_F1 206.11 177.15 52370000 80853000 441230 91510000 58586000 71828000 51575000 46645000 43195000 49135000 55639000 48765000 75484000 4774400 92308000 56021000 73822000 52421000 48771000 44752000 47885000 53288000 7 7 5 7 7 7 7 7 7 7 7 17483000 27165000 196870 31350000 21205000 38835000 19732000 15116000 13096000 15640000 18159000 16280000 25364000 1685100 31798000 20307000 38568000 19887000 16582000 13793000 15253000 17361000 2 2 2 2 2 2 2 2 2 2 2 34887000 53687000 244360 60161000 37380000 32994000 31843000 31529000 30099000 33495000 37480000 32484000 50120000 3089300 60510000 35713000 35255000 32535000 32189000 30959000 32632000 35928000 5 5 3 5 5 5 5 5 5 5 5 10866000000 5974000000 4892000000 7773 915 7249 41522;41523;41524;41525;41526 49945;49946;49947;49948;49949;49950;49951 49949 7 GYTLVEYETYK Unmodified 1364.65 0.64999808 3327 Q9Y5S9;Q9Y5S9-2 RBM8A RNA-binding protein 8A yes no 0 0 0 0 By MS/MS By MS/MS 5.29 1.03 4 4 4 2 7 7 59.36 59.46 2;3 2.5441E-30 18230 20211116_3431_TMUAki_TMT10x_P_F4 273.79 227.37 110910000 171630000 164920 213530000 135500000 150670000 111910000 98999000 104710000 100420000 129840000 103260000 160300000 8033300 213940000 129230000 156200000 114530000 103310000 107730000 98018000 124480000 14 14 3 14 14 14 14 14 14 14 14 63270000 96493000 120430 118350000 94070000 117960000 70567000 56624000 61330000 58105000 72002000 58905000 90120000 5012200 119190000 89564000 118810000 72522000 60711000 63175000 56687000 69127000 8 8 2 8 8 8 8 8 8 8 8 47645000 75134000 44497 95180000 41426000 32709000 41345000 42375000 43381000 42317000 57842000 44355000 70183000 3021100 94749000 39664000 37392000 42005000 42594000 44556000 41331000 55351000 6 6 1 6 6 6 6 6 6 6 6 13027000000 6831500000 6195300000 7774 3327 7250 41527;41528;41529;41530;41531;41532;41533;41534;41535;41536;41537;41538;41539;41540 49952;49953;49954;49955;49956;49957;49958;49959;49960;49961;49962;49963;49964;49965;49966 49952 15 GYVGHEFILDTRPFKK Unmodified 1906.0101 0.010117761 781 P23378 GLDC Glycine dehydrogenase (decarboxylating), mitochondrial yes yes 0 0 0 2 By MS/MS 2 0 1 1 52.408 52.241 5 2.586E-10 15132 20211116_3440_TMUAki_TMT10x_S_F2 122.93 104.39 1736600 2679700 17677 3212700 1730300 1345300 1326800 1908800 1732800 1735700 2225000 1617100 2502400 160370 3211900 1650000 1498300 1379500 1907100 1762500 1702300 2131100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1736600 2679700 17677 3212700 1730300 1345300 1326800 1908800 1732800 1735700 2225000 1617100 2502400 160370 3211900 1650000 1498300 1379500 1907100 1762500 1702300 2131100 1 1 1 1 1 1 1 1 1 1 1 461990000 0 461990000 7775 781 7251 41541 49967 49967 1 GYVGSIQPHGVFFR Unmodified 1562.7994 0.7993967 1726 Q14690 PDCD11 Protein RRP5 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 53.213 52.839 3 2.8832E-05 17156 20211116_3430_TMUAki_TMT10x_P_F3 85.813 45.805 1708900 3423200 30502 3465500 2053900 1654600 1515500 2447800 2068100 2202800 2589800 1591400 3194400 174940 3505300 1957700 1815100 1582500 2441400 2098300 2161500 2482100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1708900 3423200 30502 3465500 2053900 1654600 1515500 2447800 2068100 2202800 2589800 1591400 3194400 174940 3505300 1957700 1815100 1582500 2441400 2098300 2161500 2482100 1 1 1 1 1 1 1 1 1 1 1 299790000 0 299790000 7776 1726 7252 41542;41543 49968;49969 49968 2 GYVVPNVDLPPLCSSR Unmodified 1771.8927 0.89270474 2414 Q96B26 EXOSC8 Exosome complex component RRP43 yes yes 0 0 0 0 By MS/MS 8 0 2 2 68.86 68.711 3 1.9957E-06 21224 20211116_3447_TMUAki_TMT10x_S_F8 92.593 78.931 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7777 2414 7253 41544;41545 49970;49971 49970 2 GYYSPGIVSTR Unmodified 1198.5982 0.59823728 1564 Q12789;Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 yes no 0 0 0 0 By MS/MS 7 0 1 1 40.689 41.293 2 6.4042E-15 12250 20211116_3446_TMUAki_TMT10x_S_F7 196.52 156.98 282810 466160 2378.8 616590 178190 164170 178710 464450 501740 344460 488330 263340 435540 24198 611640 171020 201900 191240 453470 495820 341360 471490 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 282810 466160 2378.8 616590 178190 164170 178710 464450 501740 344460 488330 263340 435540 24198 611640 171020 201900 191240 453470 495820 341360 471490 1 1 1 1 1 1 1 1 1 1 1 28498000 0 28498000 7778 1564 7254 41546 49972 49972 1 HAAENPGKYNILGTNTIMDK Oxidation (M) 2202.0739 0.073916585 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 1 1 By MS/MS By MS/MS 6.71 1.03 1 2 2 2 4 3 44.885 45.098 4 4.8675E-18 13750 20211116_3446_TMUAki_TMT10x_S_F7 145.52 127.89 11992000 23638000 80796 14496000 30790000 55766000 21870000 79748000 86127000 51403000 37854000 11165000 22022000 598400 16051000 29299000 54804000 24639000 79024000 83094000 51371000 38011000 10 10 2 10 10 10 10 10 10 10 10 5951100 11381000 0 6521200 23943000 48298000 17930000 41697000 45966000 26702000 18098000 5541000 10602000 145870 7620700 22806000 46477000 19370000 42279000 44547000 26696000 18322000 4 4 0 4 4 4 4 4 4 4 4 6040500 12256000 80796 7974900 6847100 7468000 3939500 38052000 40160000 24701000 19756000 5624500 11421000 452540 8430600 6493600 8326400 5269300 36745000 38547000 24675000 19689000 6 6 2 6 6 6 6 6 6 6 6 12442000000 8621500000 3820700000 7779 1474 7255 41547;41548;41549;41550;41551;41552;41553 49973;49974;49975;49976;49977;49978;49979;49980;49981;49982 49979 1993 10 HAAENPGKYNILGTNTIMDK Unmodified 2186.079 0.079001963 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 50.849 51.133 4 2.7228E-24 16294 20211116_3446_TMUAki_TMT10x_S_F7 166.57 143.47 24013000 49822000 301380 30847000 64743000 77103000 50592000 44684000 34700000 42764000 45276000 22359000 46418000 2700000 33501000 61732000 74966000 51566000 47010000 36372000 41845000 43349000 5 5 4 5 5 5 5 5 5 5 5 15205000 31109000 143020 20329000 52493000 66906000 44069000 28882000 23524000 27007000 28958000 14157000 28987000 1774000 22197000 50120000 64432000 44505000 31228000 25023000 26454000 27767000 3 3 2 3 3 3 3 3 3 3 3 8807800 18713000 158360 10518000 12251000 10197000 6523800 15802000 11176000 15757000 16318000 8202100 17431000 926030 11304000 11612000 10534000 7060800 15782000 11348000 15391000 15582000 2 2 2 2 2 2 2 2 2 2 2 6249500000 4181100000 2068400000 7780 1474 7255 41554;41555;41556;41557 49983;49984;49985;49986;49987 49986 5 HAASTVQILGAEK Unmodified 1323.7147 0.71466402 3254 Q9Y2X3 NOP58 Nucleolar protein 58 yes yes 0 0 0 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 37.273 37.527 3 9.3683E-06 8475 20211116_3447_TMUAki_TMT10x_S_F8 101.53 76.096 498480 766900 0 934500 1025300 987470 607520 601700 699710 550790 849290 464110 716220 45836 942300 972420 994030 640930 629710 713110 540020 814650 2 2 0 2 2 2 2 2 2 2 2 338290 514400 0 665170 871110 846900 452940 393870 475500 359260 626190 314960 480550 32980 670650 824580 841370 482000 422290 488100 352300 599400 1 1 0 1 1 1 1 1 1 1 1 160190 252500 0 269330 154190 140570 154580 207830 224210 191520 223100 149150 235670 12856 271650 147840 152660 158930 207420 225010 187720 215250 1 1 0 1 1 1 1 1 1 1 1 66310000 55650000 10660000 7781 3254 7256 41558;41559;41560;41561 49988;49989;49990;49991 49991 4 HADIVTTTTHK Unmodified 1222.6306 0.63060004 915 P34897;P34897-3;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 4 1 28.98 28.915 3;4 1.7219E-11 6270 20211116_3433_TMUAki_TMT10x_P_F5 169.65 130.5 1408100 2341800 19242 2137900 2057000 2465100 1571000 1090100 1132200 1167600 1713600 1311200 2184400 143620 2200300 1961300 2460200 1605400 1180100 1191600 1137200 1635000 5 5 4 5 5 5 5 5 5 5 5 1214300 2001500 19242 1827900 1877300 2277300 1357500 929520 987680 999480 1461200 1130800 1867000 127890 1883800 1788100 2262000 1392700 1015200 1037800 973260 1394900 4 4 4 4 4 4 4 4 4 4 4 193780 340330 0 309980 179710 187740 213490 160610 144520 168160 252390 180420 317450 15725 316540 173160 198190 212650 164900 153870 163920 240130 1 1 0 1 1 1 1 1 1 1 1 157860000 151670000 6187100 7782 915 7257 41562;41563;41564;41565;41566 49992;49993;49994;49995;49996 49994 5 HAEATLGSGNLR Unmodified 1224.6211 0.62109799 2065 Q7L9L4;Q9H8S9;Q7L9L4-2;Q9H8S9-2 MOB1B;MOB1A MOB kinase activator 1B;MOB kinase activator 1A yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 28.955 28.855 3 1.7971E-07 5881 20211116_3431_TMUAki_TMT10x_P_F4 128.33 115.37 342200 496320 15808 464290 384000 448960 328010 251800 273140 263000 374250 318740 463000 43689 475690 367750 453890 333940 266300 283860 256400 357890 2 2 2 2 2 2 2 2 2 2 2 217460 284070 11515 279880 247960 310840 188910 150770 157180 149350 226120 202560 265060 29188 286280 236970 311160 193730 161330 163740 145920 216000 1 1 1 1 1 1 1 1 1 1 1 124750 212240 4293.1 184410 136050 138120 139100 101040 115960 113650 148130 116190 197940 14502 189400 130780 142730 140220 104980 120120 110480 141900 1 1 1 1 1 1 1 1 1 1 1 28257000 19675000 8582200 7783 2065 7258 41567;41568;41569 49997;49998 49997 2 HAELIASTFVDQCK Unmodified 1617.7821 0.78209166 3073 Q9UBB4;Q9UBB4-2 ATXN10 Ataxin-10 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 51.28 51.4 3 2.6429E-09 14392 20211116_3445_TMUAki_TMT10x_S_F6 125.53 111.78 16831000 29379000 224850 29181000 23737000 27097000 18605000 22637000 20783000 21063000 24968000 15673000 27413000 1682300 29752000 22644000 27633000 19208000 23194000 21196000 20636000 23956000 5 5 3 5 5 5 5 5 5 5 5 6550300 11486000 185090 11263000 13478000 17737000 10234000 9614200 8915400 8830000 10166000 6100300 10717000 812580 11602000 12853000 17488000 10510000 10162000 9171900 8656200 9767600 2 2 2 2 2 2 2 2 2 2 2 10281000 17892000 39765 17918000 10259000 9359800 8371300 13023000 11867000 12233000 14803000 9572800 16696000 869730 18149000 9790700 10145000 8698300 13032000 12024000 11980000 14189000 3 3 1 3 3 3 3 3 3 3 3 1197400000 712700000 484660000 7784 3073 7259 41570;41571 49999;50000;50001;50002;50003 50002 5 HAEMVHTGLK Oxidation (M) 1137.5601 0.56007764 1482 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 yes no 0 0 1 0 By MS/MS 5 0 2 2 27.419 27.346 3;4 0.015232 5629 20211116_3433_TMUAki_TMT10x_P_F5 57.348 38.909 421580 701110 2586.5 583630 527990 706550 483180 326770 376340 372130 501160 392470 653770 28622 605540 504620 703670 489150 352760 391970 361570 479590 2 2 1 2 2 2 2 2 2 2 2 421580 701110 2586.5 583630 527990 706550 483180 326770 376340 372130 501160 392470 653770 28622 605540 504620 703670 489150 352760 391970 361570 479590 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16232000 16232000 0 7785 1482 7260 41572;41573 50004;50005 50004 2010 2 HAEMVHTGLKLER Oxidation (M) 1535.7878 0.78784574 1482 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 yes no 0 0 1 1 By MS/MS 4.83 0.687 2 3 1 6 29.471 29.447 3;4;5 0.00096483 6436 20211116_3433_TMUAki_TMT10x_P_F5 77.664 55.189 2105900 3522500 8419.6 2852700 3237100 3733600 2705900 2190000 2401500 2138200 2743300 1960600 3284400 168020 2970800 3089100 3714500 2763000 2303000 2468500 2090400 2635800 5 5 3 5 5 5 5 5 5 5 5 2105900 3522500 8419.6 2852700 3237100 3733600 2705900 2190000 2401500 2138200 2743300 1960600 3284400 168020 2970800 3089100 3714500 2763000 2303000 2468500 2090400 2635800 5 5 3 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 137860000 137860000 0 7786 1482 7261 41574;41575;41576;41577;41578;41579 50006;50007;50008;50009 50008 2010 4 HAEQERDELADEITNSASGK Unmodified 2199.004 0.0039823436 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 1 By MS/MS By MS/MS 1.75 0.661 3 4 1 4 4 42.201 42.078 3;4 1.3945E-71 12335 20211116_3429_TMUAki_TMT10x_P_F2 287.93 260.71 9126600 15696000 113770 19894000 18365000 20601000 10875000 17391000 19284000 13934000 15306000 8498500 14662000 969070 20010000 17426000 20871000 11683000 17740000 19109000 13751000 14888000 9 9 7 9 9 9 9 9 9 9 9 5559100 9470600 93140 11960000 16372000 18171000 9244700 10481000 11692000 8270500 9319400 5176600 8846300 679720 12118000 15523000 17955000 9825700 10978000 11704000 8168400 9063500 5 5 4 5 5 5 5 5 5 5 5 3567600 6225400 20627 7934200 1992900 2430500 1630700 6910100 7592000 5663200 5986300 3321900 5815400 289360 7891200 1902800 2916100 1857600 6762300 7405700 5582400 5824400 4 4 3 4 4 4 4 4 4 4 4 1625300000 1094900000 530410000 7787 935 7262 41580;41581;41582;41583;41584;41585;41586;41587 50010;50011;50012;50013;50014;50015;50016;50017;50018 50014 9 HAEVEFTTDWQK Unmodified 1489.6838 0.68375782 2538 Q96Q11;Q96Q11-2 TRNT1 CCA tRNA nucleotidyltransferase 1, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 48.353 48.511 3 6.4894E-05 14251 20211116_3442_TMUAki_TMT10x_S_F4 96.64 82.079 3705000 5648400 33037 6663800 5982000 5817200 4316100 4330000 4300700 3752600 4725700 3449900 5274300 364820 6713800 5695700 5945000 4464700 4460200 4391000 3688800 4545600 2 2 1 2 2 2 2 2 2 2 2 1936900 2902800 33037 3338200 4312700 4542900 2799500 2794700 2628200 2181300 2583000 1803700 2710200 224640 3392700 4099200 4514400 2913500 2911300 2679700 2155600 2493200 1 1 1 1 1 1 1 1 1 1 1 1768100 2745600 0 3325600 1669300 1274300 1516600 1535300 1672400 1571300 2142700 1646200 2564100 140170 3321000 1596400 1430600 1551200 1548900 1711300 1533100 2052400 1 1 0 1 1 1 1 1 1 1 1 562220000 380000000 182220000 7788 2538 7263 41588;41589;41590 50019;50020 50020 2 HAEYSVILQEK Unmodified 1315.6772 0.67721588 2296 Q8WUB8;Q8WUB8-2;Q8WUB8-3 PHF10 PHD finger protein 10 yes no 0 0 0 0 By MS/MS 5 1 1 1 2 43.507 43.722 3 7.9521E-07 12174 20211116_3442_TMUAki_TMT10x_S_F4 129.16 102.61 1398700 2312300 19218 2468600 1631000 1632100 1356300 4955400 4333100 3199300 2993200 1302500 2158200 137130 2494900 1558200 1789000 1482300 4818100 4230400 3197000 2928900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1398700 2312300 19218 2468600 1631000 1632100 1356300 4955400 4333100 3199300 2993200 1302500 2158200 137130 2494900 1558200 1789000 1482300 4818100 4230400 3197000 2928900 1 1 1 1 1 1 1 1 1 1 1 168120000 0 168120000 7789 2296 7264 41591;41592 50021;50022 50021 2 HAFEIFR Unmodified 918.47119 0.47118627 1657 Q13618;Q13618-3;Q13618-2 CUL3 Cullin-3 yes no 0 0 0 0 By MS/MS 7 0 1 1 41.232 41.836 3 0.0022242 12481 20211116_3446_TMUAki_TMT10x_S_F7 107.43 55.741 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7790 1657 7265 41593 50023 50023 1 HAGSNKMLDK Oxidation (M) 1115.5393 0.53934219 3369 yes no 0 0 1 1 By MS/MS By MS/MS 1.8 0.4 1 4 3 2 58.925 58.682 3 0.024011 19095 20211116_3429_TMUAki_TMT10x_P_F2 57.492 15.451 + 82851000 128290000 899530 140260000 57276000 93467000 65706000 61686000 71593000 66696000 85608000 77149000 119750000 7287900 141540000 55182000 97390000 66390000 64472000 73073000 64932000 82149000 7 7 4 7 7 7 7 7 7 7 7 56928000 85479000 899530 94621000 42109000 73629000 43203000 41838000 49652000 44124000 57977000 53012000 79795000 5324100 95570000 40456000 75589000 43965000 44211000 50525000 43000000 55671000 5 5 4 5 5 5 5 5 5 5 5 25923000 42808000 0 45639000 15167000 19837000 22503000 19848000 21941000 22572000 27630000 24137000 39955000 1963800 45974000 14725000 21801000 22425000 20261000 22548000 21932000 26478000 2 2 0 2 2 2 2 2 2 2 2 3254000000 1635700000 1618300000 7791 3369 7266 41594;41595;41596;41597;41598 50024;50025;50026;50027 50025 3304 4 HAGYSVVEMNASDDRSPEVFR Oxidation (M) 2381.0706 0.070622121 2305 Q8WVB6;Q8WVB6-2 CHTF18 Chromosome transmission fidelity protein 18 homolog yes no 0 0 1 1 By MS/MS 5 0 1 1 37.085 37.247 4 0.003208 8411 20211116_3444_TMUAki_TMT10x_S_F5 58.073 50.505 319800 556420 0 581540 287200 250820 294450 465270 496270 387010 449700 297710 519290 19267 586550 275120 280740 304540 459890 494380 381200 435250 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 319800 556420 0 581540 287200 250820 294450 465270 496270 387010 449700 297710 519290 19267 586550 275120 280740 304540 459890 494380 381200 435250 1 1 0 1 1 1 1 1 1 1 1 20153000 0 20153000 7792 2305 7267 41599 50028 50028 2666 1 HAIPIIK Unmodified 790.50651 0.50650915 104 O00571;O00571-2;O15523;O15523-2;O15523-3 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 0 0 By MS/MS By MS/MS 5.6 3.07 3 1 1 5 6 4 37.052 37.258 2;3 0.0025901 11154 20211116_3439_TMUAki_TMT10x_S_F1 124.12 73.222 11816000 17990000 1280500 20428000 13591000 20364000 10060000 12520000 12154000 12404000 15818000 11011000 16796000 2197900 20666000 13020000 20573000 10454000 13122000 12403000 12119000 15146000 10 10 10 10 10 10 10 10 10 10 10 6463400 9542400 696050 10663000 9132300 12747000 5749100 6840300 6319000 6617300 8442600 6023300 8908300 1221900 10830000 8713600 12725000 6026100 7246200 6478900 6472000 8078500 6 6 6 6 6 6 6 6 6 6 6 5352400 8447800 584500 9764200 4458400 7617000 4311100 5679600 5835100 5786700 7375500 4987900 7887700 975960 9836000 4306600 7848600 4427800 5875600 5924200 5647200 7067200 4 4 4 4 4 4 4 4 4 4 4 1201600000 641600000 560030000 7793 104 7268 41600;41601;41602;41603;41604;41605;41606;41607;41608;41609 50029;50030;50031;50032;50033;50034;50035;50036;50037;50038;50039 50037 11 HAIYDKLDDDGLIAPGVR Unmodified 1967.0112 0.011239973 881 P30876 POLR2B DNA-directed RNA polymerase II subunit RPB2 yes yes 0 0 0 1 By MS/MS 6 0 1 1 55.459 55.549 4 0.00031512 16091 20211116_3445_TMUAki_TMT10x_S_F6 68.129 57.753 4557600 7411300 19316 7354100 4352700 4043400 3990000 6840800 6396700 6200700 6705400 4243700 6915300 392990 7457000 4165600 4386200 4140700 6794900 6413200 6082300 6458900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4557600 7411300 19316 7354100 4352700 4043400 3990000 6840800 6396700 6200700 6705400 4243700 6915300 392990 7457000 4165600 4386200 4140700 6794900 6413200 6082300 6458900 1 1 1 1 1 1 1 1 1 1 1 265000000 0 265000000 7794 881 7269 41610 50040 50040 1 HALFPELPK Unmodified 1050.5862 0.58621603 2507 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 51.317 51.515 3 1.0729E-05 15845 20211116_3435_TMUAki_TMT10x_P_F7 109.71 84.277 4175800 6650700 2634.2 7226900 3733400 3230600 3230900 4788100 5572500 4931200 5400200 3888000 6208000 326830 7272200 3566200 3572600 3376000 4793900 5560500 4810200 5214700 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4175800 6650700 2634.2 7226900 3733400 3230600 3230900 4788100 5572500 4931200 5400200 3888000 6208000 326830 7272200 3566200 3572600 3376000 4793900 5560500 4810200 5214700 3 3 1 3 3 3 3 3 3 3 3 485130000 0 485130000 7795 2507 7270 41611;41612;41613;41614 50041;50042;50043;50044;50045 50041 5 HALGQYVQAFR Unmodified 1288.6677 0.66765425 3326 Q9Y5Q9 GTF3C3 General transcription factor 3C polypeptide 3 yes yes 0 0 0 0 By MS/MS 3 0 1 1 43.795 43.466 3 0.0087928 14455 20211116_3441_TMUAki_TMT10x_S_F3 64.73 46.91 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7796 3326 7271 41615 50046 50046 1 HALIIYDDLSK Unmodified 1286.6871 0.68705229 805 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.23 1.42 2 2 3 4 1 1 7 6 53.195 53.309 2;3 1.3931E-14 15945 20211116_3433_TMUAki_TMT10x_P_F5 192.32 161.75 62604000 102230000 671810 116950000 102720000 110690000 70649000 84001000 79176000 74667000 86868000 58292000 95445000 5916900 118180000 97696000 112550000 73603000 86474000 80448000 73308000 83560000 14 14 10 14 14 14 14 14 14 14 14 37969000 61668000 350820 72013000 78552000 88838000 51269000 51649000 49189000 46480000 53182000 35354000 57582000 3934600 72986000 74648000 88629000 53367000 54235000 50274000 45608000 51179000 9 9 6 9 9 9 9 9 9 9 9 24635000 40560000 320990 44940000 24166000 21851000 19380000 32352000 29987000 28187000 33686000 22938000 37863000 1982300 45192000 23048000 23920000 20236000 32239000 30174000 27700000 32381000 5 5 4 5 5 5 5 5 5 5 5 11882000000 7409800000 4472400000 7797 805 7272 41616;41617;41618;41619;41620;41621;41622;41623;41624;41625;41626;41627;41628 50047;50048;50049;50050;50051;50052;50053;50054;50055;50056;50057;50058;50059;50060;50061 50050 15 HALLDVTPK Unmodified 992.56548 0.56548059 3098 Q9UDY2;Q9UDY2-2;Q9UDY2-5;Q9UDY2-4;Q9UDY2-6;Q9UDY2-3;Q9UDY2-7 TJP2 Tight junction protein ZO-2 yes no 0 0 0 0 By MS/MS 6 0 1 1 39.816 39.833 3 0.0028197 9431 20211116_3434_TMUAki_TMT10x_P_F6 74.162 54.685 1855500 2610200 4568.3 2976100 4287900 3502700 2033700 1840700 2119100 1646400 2394500 1727700 2436900 185080 3018100 4054600 3498400 2183400 1949600 2161900 1616000 2301400 3 3 2 3 3 3 3 3 3 3 3 1855500 2610200 4568.3 2976100 4287900 3502700 2033700 1840700 2119100 1646400 2394500 1727700 2436900 185080 3018100 4054600 3498400 2183400 1949600 2161900 1616000 2301400 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 52796000 52796000 0 7798 3098 7273 41629 50062;50063;50064 50064 3 HALPPGFVLK Unmodified 1077.6335 0.63350057 2294 Q8WU90;Q8WU90-2 ZC3H15 Zinc finger CCCH domain-containing protein 15 yes no 0 0 0 0 By MS/MS 2 0 1 1 48.944 48.671 3 0.0011881 15057 20211116_3429_TMUAki_TMT10x_P_F2 76.221 56.609 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7799 2294 7274 41630 50065 50065 1 HANAKPFEVPFLK Unmodified 1496.814 0.81398414 3157 Q9UKK9 NUDT5 ADP-sugar pyrophosphatase yes yes 0 0 0 1 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 53.826 53.678 4 5.4554E-06 15507 20211116_3428_TMUAki_TMT10x_P_F1 106.01 76.708 9793200 15080000 131580 16680000 16955000 21654000 13586000 15706000 17877000 15982000 14360000 9119400 14077000 1034900 16978000 16181000 21620000 14089000 16277000 17874000 15597000 13961000 4 4 4 4 4 4 4 4 4 4 4 7851300 11982000 123480 13483000 15359000 19641000 11542000 12838000 14775000 13147000 11626000 7311200 11186000 871150 13741000 14638000 19477000 12007000 13406000 14777000 12827000 11313000 3 3 3 3 3 3 3 3 3 3 3 1941900 3098100 8094.9 3197000 1596200 2013000 2043500 2867800 3102200 2834600 2733400 1808100 2891200 163700 3236800 1542200 2143000 2082200 2871700 3096500 2769800 2648200 1 1 1 1 1 1 1 1 1 1 1 1861500000 1054500000 807000000 7800 3157 7275 41631;41632;41633 50066;50067;50068;50069 50067 4 HANAKPFEVPFLKF Unmodified 1643.8824 0.88239805 3157 Q9UKK9 NUDT5 ADP-sugar pyrophosphatase yes yes 0 0 0 2 By MS/MS By MS/MS 2.6 0.49 2 3 2 3 66.263 65.94 3;4 4.6456E-05 23641 20211116_3441_TMUAki_TMT10x_S_F3 99.531 81.787 19773000 31041000 404190 29826000 23307000 36975000 26109000 30012000 31834000 31336000 26986000 18413000 28960000 2059700 30620000 22442000 37071000 26515000 30906000 31963000 30550000 26182000 5 5 4 5 5 5 5 5 5 5 5 13016000 19757000 272110 19357000 13929000 27760000 16697000 19571000 21000000 20663000 16909000 12121000 18433000 1345500 19902000 13442000 27577000 16925000 20344000 21030000 20136000 16438000 3 3 3 3 3 3 3 3 3 3 3 6756800 11285000 132080 10468000 9377900 9215800 9412500 10441000 10834000 10673000 10077000 6292200 10527000 714180 10718000 9000500 9493200 9589700 10561000 10932000 10414000 9744400 2 2 1 2 2 2 2 2 2 2 2 4318600000 2348600000 1970000000 7801 3157 7276 41634;41635;41636;41637;41638 50070;50071;50072;50073;50074;50075 50073 6 HAPLADQILAGNAVR Unmodified 1544.8423 0.84232415 1669 Q13895 BYSL Bystin yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 45.067 45.392 3 1.4361E-10 11625 20211116_3434_TMUAki_TMT10x_P_F6 139.19 117.8 10573000 17553000 220190 19560000 18371000 21287000 12826000 15945000 14777000 13646000 15519000 9845900 16386000 1170100 19839000 17487000 21460000 13360000 16413000 14974000 13422000 14948000 7 7 6 7 7 7 7 7 7 7 7 7517900 11999000 163910 13775000 15430000 18402000 10225000 11080000 10416000 9568200 10512000 7000900 11203000 866010 13996000 14673000 18296000 10650000 11590000 10592000 9407100 10137000 5 5 4 5 5 5 5 5 5 5 5 3055000 5553600 56275 5785500 2940200 2885800 2600800 4865400 4360800 4077400 5007400 2844900 5182900 304120 5842400 2814100 3163200 2710300 4823300 4382300 4014600 4810400 2 2 2 2 2 2 2 2 2 2 2 2102200000 1202700000 899490000 7802 1669 7277 41639;41640;41641;41642 50076;50077;50078;50079;50080;50081;50082 50077 7 HAQPTCPGAQLCTVYYASLNFR Unmodified 2553.1893 0.18929747 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 62.558 62.223 3 8.9561E-20 21059 20211116_3430_TMUAki_TMT10x_P_F3 150.91 142.31 3994000 7544100 12222 6487200 4015400 7548300 5357700 4866100 5167200 4832100 4639900 3718700 7035500 200680 6708500 3883500 7564000 5358400 5081900 5246400 4720700 4492300 3 3 1 3 3 3 3 3 3 3 3 2428400 4641600 12222 3732900 2773300 5803400 3622800 2932000 2550400 3072900 3120900 2261000 4327700 200680 3903300 2680200 5719800 3597100 3130200 2661700 2995300 2993000 2 2 1 2 2 2 2 2 2 2 2 1565600 2902600 0 2754300 1242100 1744900 1734900 1934100 2616800 1759300 1518900 1457700 2707800 0 2805200 1203400 1844100 1761300 1951700 2584600 1725400 1499300 1 1 0 1 1 1 1 1 1 1 1 1470800000 825210000 645610000 7803 1092 7278 41643;41644;41645 50083;50084;50085 50083 3 HASPILPITEFSDIPR Unmodified 1791.9519 0.95193418 1007 P42167 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 63.408 63.496 3 4.0927E-15 19034 20211116_3447_TMUAki_TMT10x_S_F8 145.52 125.68 11273000 20129000 88661 17636000 13739000 19713000 14017000 15895000 14829000 15588000 16240000 10497000 18773000 1040700 18199000 13186000 19868000 14229000 16344000 15101000 15237000 15622000 4 4 3 4 4 4 4 4 4 4 4 5758800 10228000 63934 8634200 6866200 13180000 7564100 7991400 7497800 7773600 8293800 5362500 9538200 552540 8988900 6605000 13030000 7634100 8380400 7658900 7601100 7976100 2 2 2 2 2 2 2 2 2 2 2 5514300 9900300 24726 9001600 6873200 6532600 6453100 7903400 7331600 7814600 7946100 5134500 9234700 488130 9209700 6580600 6838000 6594800 7963800 7442000 7635800 7646300 2 2 1 2 2 2 2 2 2 2 2 1453400000 793140000 660250000 7804 1007 7279 41646;41647;41648 50086;50087;50088;50089;50090 50089 5 HATAEEVEEEERDRIPGPVCK Unmodified 2450.1496 0.14960072 2280 Q8TDN6 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 0 0 0 2 By MS/MS 2 0 1 1 39.241 38.981 5 1.4765E-26 11106 20211116_3429_TMUAki_TMT10x_P_F2 174.32 152.17 540960 918560 14297 993430 1429500 2224300 919430 1226800 1229000 987190 1113200 503790 857400 70619 1026600 1358800 2167600 968880 1290500 1232600 974020 1077500 1 1 1 1 1 1 1 1 1 1 1 540960 918560 14297 993430 1429500 2224300 919430 1226800 1229000 987190 1113200 503790 857400 70619 1026600 1358800 2167600 968880 1290500 1232600 974020 1077500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 104550000 104550000 0 7805 2280 7280 41649 50091 50091 1 HAVGDDAQFEMDI Oxidation (M) 1462.6035 0.60345859 1644 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 yes yes 0 0 1 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 46.718 46.575 2 1.0293E-08 12597 20211116_3428_TMUAki_TMT10x_P_F1 128.12 117.89 4117300 7637000 37141 8483800 8047900 10815000 5676600 10855000 9043700 6522800 7365300 3833700 7129300 408770 8629900 7657800 10875000 5986200 10905000 8993500 6549000 7157000 5 5 3 5 5 5 5 5 5 5 5 2789100 4934700 24299 5533800 6906600 9638300 4807900 6182100 5478500 4091000 4660100 2597000 4606800 299480 5664500 6570300 9488000 5007400 6397400 5515000 4081600 4520700 3 3 2 3 3 3 3 3 3 3 3 1328300 2702300 12842 2950000 1141200 1176500 868680 4673000 3565200 2431800 2705200 1236800 2522500 109300 2965500 1087500 1386500 978860 4507600 3478500 2467400 2636300 2 2 1 2 2 2 2 2 2 2 2 683250000 463960000 219290000 7806 1644 7281 41650;41651;41652;41653 50092;50093;50094;50095;50096 50093 2211 5 HAVSDPSILDSLDLNEDEREVLINNINR Unmodified 3189.5902 0.59019838 504 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 0 0 0 1 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 74.213 74.118 4 1.2314E-42 25918 20211116_3430_TMUAki_TMT10x_P_F3 196.28 170.08 5349100 10289000 83367 9499200 8746500 7920000 7639700 6380200 6038200 6620900 7458200 4981000 9597400 538670 9722900 8361800 8131200 7757600 6571800 6263300 6456400 7150700 3 3 2 3 3 3 3 3 3 3 3 1451900 2442000 0 2281300 1669400 3090600 1732200 1861400 1642300 1858000 1857200 1351600 2278100 93332 2350800 1600300 3070900 1751000 1954500 1682300 1814700 1784900 1 1 0 1 1 1 1 1 1 1 1 3897200 7846600 83367 7217900 7077100 4829400 5907500 4518700 4395900 4762900 5601000 3629300 7319300 445340 7372200 6761500 5060300 6006600 4617300 4581000 4641600 5365800 2 2 2 2 2 2 2 2 2 2 2 3409900000 997690000 2412200000 7807 504 7282 41654;41655;41656;41657;41658 50097;50098;50099 50097 3 HAVSDPSILDSLDLNEDEREVLINNINRR Unmodified 3345.6913 0.6913094 504 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 0 0 0 2 By MS/MS By MS/MS 3.14 1.25 1 1 2 2 1 3 4 68.267 68.077 5 5.2102E-25 21829 20211116_3431_TMUAki_TMT10x_P_F4 146.64 131.64 73813000 117060000 1296500 128100000 83400000 103200000 82925000 70433000 53789000 75962000 94837000 68736000 109270000 6646400 129530000 80022000 105940000 83238000 73431000 57452000 73961000 90215000 15 15 10 15 15 15 15 15 15 15 15 31024000 45465000 447790 50409000 35654000 62031000 39064000 28128000 21015000 30733000 38276000 28889000 42442000 2310000 51250000 34292000 61715000 38888000 30388000 22781000 29908000 36389000 6 6 2 6 6 6 6 6 6 6 6 42789000 71592000 848730 77689000 47746000 41172000 43861000 42305000 32774000 45229000 56561000 39847000 66826000 4336500 78279000 45730000 44221000 44350000 43043000 34671000 44053000 53826000 9 9 8 9 9 9 9 9 9 9 9 18182000000 7189200000 10992000000 7808 504 7283 41659;41660;41661;41662;41663;41664;41665 50100;50101;50102;50103;50104;50105;50106;50107;50108;50109;50110;50111;50112;50113;50114 50105 15 HAVSEGTK Unmodified 827.41373 0.41373097 290;528;2613;2191 Q93079;Q99877;P62807;P58876;O60814;Q5QNW6;Q99879;Q5QNW6-2;P57053;P33778;Q16778;P23527;P06899;Q8N257;A0A2R8Y619;Q99880;Q96A08 HIST1H2BH;HIST1H2BN;HIST1H2BC;HIST1H2BD;HIST1H2BK;HIST2H2BF;HIST1H2BM;H2BFS;HIST1H2BB;HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST1H2BL;HIST1H2BA Histone H2B type 1-H;Histone H2B type 1-N;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type 2-F;Histone H2B type 1-M;Histone H2B type F-S;Histone H2B type 1-B;Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Histone H2B type 1-L;Histone H2B type 1-A no no 0 0 0 0 By MS/MS By MS/MS 3.89 1.2 1 3 2 2 1 6 3 24.081 24.009 2;3 0.00036727 7051 20211116_3441_TMUAki_TMT10x_S_F3 130.28 85.197 3301800 4990100 33772 3530400 3084900 5189800 3144500 2623400 2538200 2437200 3382800 3074500 4650900 289310 3729500 2960700 5127000 3167700 2791300 2638700 2388000 3237100 7 7 4 7 7 7 7 7 7 7 7 1850200 2856900 30262 2121800 1731000 2900200 1612100 1684200 1661100 1590900 2022100 1722900 2663100 173600 2228100 1658200 2879200 1642900 1770900 1700500 1557600 1939500 4 4 2 4 4 4 4 4 4 4 4 1451600 2133200 3510.6 1408700 1353900 2289600 1532400 939260 877090 846320 1360700 1351600 1987800 115710 1501400 1302500 2247800 1524800 1020300 938120 830390 1297700 3 3 2 3 3 3 3 3 3 3 3 408450000 180540000 227910000 7809 290;528;2191;2613 7284 41666;41667;41668;41669;41670;41671;41672;41673;41674 50115;50116;50117;50118;50119;50120;50121 50119 7 HAVVNLINYQDDAELATR Unmodified 2041.0229 0.022867292 923 P35222 CTNNB1 Catenin beta-1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 1 3 54.447 54.541 3 5.7603E-07 16473 20211116_3433_TMUAki_TMT10x_P_F5 93.427 82.372 2848300 4822000 36003 5271100 3014000 2838300 2569600 3942500 4347900 3813500 4243400 2652300 4501200 271270 5309300 2880900 3066400 2684800 3948900 4341700 3729800 4096700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2848300 4822000 36003 5271100 3014000 2838300 2569600 3942500 4347900 3813500 4243400 2652300 4501200 271270 5309300 2880900 3066400 2684800 3948900 4341700 3729800 4096700 2 2 1 2 2 2 2 2 2 2 2 1287700000 0 1287700000 7810 923 7285 41675;41676;41677;41678 50122;50123;50124;50125 50122 4 HAYGDQYR Unmodified 1008.4413 0.44134271 364 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 0 0 0 0 By MS/MS 3 0 1 1 25.81 25.509 3 0.03181 7333 20211116_3441_TMUAki_TMT10x_S_F3 51.346 37.351 31823 55738 1692.1 42031 42665 41119 42126 40608 35131 33284 38938 29643 51958 4367.2 43833 40998 41934 42542 41094 36181 32809 37445 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31823 55738 1692.1 42031 42665 41119 42126 40608 35131 33284 38938 29643 51958 4367.2 43833 40998 41934 42542 41094 36181 32809 37445 1 1 1 1 1 1 1 1 1 1 1 1295700 0 1295700 7811 364 7286 41679 50126 50126 1 HCALALGNCALHGGQAVQR Unmodified 2031.9843 0.98433049 2017 Q6SZW1;Q6SZW1-2 SARM1 Sterile alpha and TIR motif-containing protein 1 yes no 0 0 0 0 By MS/MS 1.67 0.471 1 2 3 34.771 34.623 3;4 1.2297E-31 9371 20211116_3429_TMUAki_TMT10x_P_F2 187.89 174.47 705500 1075900 13383 1390700 1878200 1698000 1049800 926760 986890 807130 1092100 656940 1005100 81236 1401100 1780500 1693600 1106300 977610 1010500 793210 1050200 4 4 2 4 4 4 4 4 4 4 4 705500 1075900 13383 1390700 1878200 1698000 1049800 926760 986890 807130 1092100 656940 1005100 81236 1401100 1780500 1693600 1106300 977610 1010500 793210 1050200 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 290040000 290040000 0 7812 2017 7287 41680;41681;41682 50127;50128;50129;50130 50130 4 HCDLQVR Unmodified 926.43923 0.43923422 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 By MS/MS 3 0 1 1 26.726 26.433 3 0.026768 7681 20211116_3441_TMUAki_TMT10x_S_F3 60.76 15.042 58454 117110 681.35 88710 89566 71465 86782 60791 53159 60092 80715 54432 109170 5917 92248 85851 73628 87131 62326 56529 58718 77010 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 58454 117110 681.35 88710 89566 71465 86782 60791 53159 60092 80715 54432 109170 5917 92248 85851 73628 87131 62326 56529 58718 77010 1 1 1 1 1 1 1 1 1 1 1 2089100 0 2089100 7813 1684 7288 41683 50131 50131 1 HCECSTDEVNSEDMDAYCR Oxidation (M) 2392.8301 0.83005878 510 P05556-4;P05556-3;P05556;P05556-2;P05556-5 ITGB1 Integrin beta-1 yes no 0 0 1 0 By MS/MS By matching 1 0 2 1 1 29.554 29.587 3 1.6415E-08 5879 20211116_3428_TMUAki_TMT10x_P_F1 108.96 104.25 25116 49932 2010 86911 171140 86661 47829 46252 39984 40128 45220 23401 46731 3818.1 86048 161120 87392 54720 48882 41206 39444 43460 2 2 1 2 2 2 2 2 2 2 2 25116 49932 2010 86911 171140 86661 47829 46252 39984 40128 45220 23401 46731 3818.1 86048 161120 87392 54720 48882 41206 39444 43460 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10353000 7694200 2658500 7814 510 7289 41684;41685 50132;50133 50132 414 2 HCHEAQAVLGVLLR Unmodified 1601.846 0.84602932 1563 Q12788 TBL3 Transducin beta-like protein 3 yes yes 0 0 0 0 By MS/MS 8 0 1 1 49.879 49.779 3 0.0047767 13580 20211116_3447_TMUAki_TMT10x_S_F8 60.196 35.814 2650500 4634500 0 4247200 2010600 2869400 2477400 4472100 5664900 4410200 4159800 2467800 4323100 194310 4339600 1938500 3044200 2587200 4464200 5570100 4309800 4059400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2650500 4634500 0 4247200 2010600 2869400 2477400 4472100 5664900 4410200 4159800 2467800 4323100 194310 4339600 1938500 3044200 2587200 4464200 5570100 4309800 4059400 1 1 0 1 1 1 1 1 1 1 1 258390000 0 258390000 7815 1563 7290 41686 50134 50134 1 HCIPLKPSNELTNSTVVIDTHKPK Unmodified 2727.4378 0.43778424 2314 Q8WWK9;Q8WWK9-4;Q8WWK9-6;Q8WWK9-5 CKAP2 Cytoskeleton-associated protein 2 yes no 0 0 0 2 By MS/MS 1 0 1 1 45.214 45.214 6 2.1118E-05 12076 20211116_3428_TMUAki_TMT10x_P_F1 76.417 63.74 4294400 6832200 33481 7226300 10624000 9172900 5581500 6639000 7425400 5409800 6054400 3998800 6376700 475890 7373300 10062000 9167800 5982300 6841100 7424800 5334100 5882900 1 1 1 1 1 1 1 1 1 1 1 4294400 6832200 33481 7226300 10624000 9172900 5581500 6639000 7425400 5409800 6054400 3998800 6376700 475890 7373300 10062000 9167800 5982300 6841100 7424800 5334100 5882900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 998320000 998320000 0 7816 2314 7291 41687 50135 50135 1 HCLEAHQTLLNK Unmodified 1462.7351 0.73508189 2278 Q8TD57;Q8TD57-3;Q8TD57-2 DNAH3 Dynein heavy chain 3, axonemal yes no 0 0 0 0 By MS/MS By MS/MS 3 1.33 1 2 4 1 1 4 5 36.619 36.584 3;4 0.083936 10996 20211116_3430_TMUAki_TMT10x_P_F3 31.228 10.565 9371600 9713800 147010 17746000 10434000 7573500 6393700 5224900 6592300 7865600 6429600 8726900 9094100 913070 17385000 9911100 8290100 6702800 5509900 6692000 7573200 6207500 11 11 8 11 11 11 11 11 11 11 11 3783600 3638600 27985 6904700 5503700 4484500 2725100 2093200 2531900 2920700 2200300 3523100 3407400 363010 6777100 5209000 4664000 2903500 2273700 2572500 2818500 2132800 4 4 3 4 4 4 4 4 4 4 4 5588000 6075200 119030 10842000 4930400 3089000 3668600 3131600 4060400 4944900 4229300 5203800 5686600 550070 10608000 4702000 3626000 3799300 3236200 4119600 4754700 4074700 7 7 5 7 7 7 7 7 7 7 7 1979200000 700550000 1278600000 7817 2278 7292 41688;41689;41690;41691;41692;41693;41694;41695;41696 50136;50137;50138;50139 50138 4 HCLSAANVIFGQTGK Unmodified 1601.7984 0.79841043 2443 Q96EK5 KIAA1279 KIF1-binding protein yes yes 0 0 0 0 By MS/MS 2 0 1 1 51.602 51.435 3 1.5408E-06 14884 20211116_3440_TMUAki_TMT10x_S_F2 102.28 86.138 2102200 4052700 23096 3764400 2396100 2226000 1978500 3202500 2830600 2623400 3157500 1957500 3780500 199930 3837700 2288400 2384500 2055100 3189500 2853900 2586000 3035800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2102200 4052700 23096 3764400 2396100 2226000 1978500 3202500 2830600 2623400 3157500 1957500 3780500 199930 3837700 2288400 2384500 2055100 3189500 2853900 2586000 3035800 1 1 1 1 1 1 1 1 1 1 1 163060000 0 163060000 7818 2443 7293 41697 50140 50140 1 HCNMVLENVK Oxidation (M) 1258.5798 0.5798268 1354 P62316;P62316-2 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes no 0 0 1 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 32.576 32.619 3 0.0039206 7452 20211116_3431_TMUAki_TMT10x_P_F4 66.19 44.104 1651300 2789700 13202 2965800 3729100 3427100 2238200 1972500 1944300 1735500 2314600 1537600 2603700 178310 3020100 3539000 3430200 2339200 2071800 2003900 1704800 2221300 3 3 3 3 3 3 3 3 3 3 3 1512700 2524700 11463 2688900 3572700 3320400 2089600 1824100 1794000 1588100 2094600 1408500 2356500 164950 2740900 3389100 3310000 2187900 1923100 1848700 1560700 2011300 2 2 2 2 2 2 2 2 2 2 2 138660 264950 1738.9 276990 156410 106670 148640 148380 150270 147440 219960 129120 247270 13365 279180 149880 120110 151230 148730 155270 144040 210030 1 1 1 1 1 1 1 1 1 1 1 107180000 99884000 7293000 7819 1354 7294 41698;41699;41700 50141;50142;50143 50141 1810 3 HCPYLDTINR Unmodified 1287.603 0.60300508 1906 Q53GS9;Q53GS9-3 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 33.461 33.639 3 1.7373E-07 8376 20211116_3433_TMUAki_TMT10x_P_F5 109.83 78.457 428360 675390 21085 757390 377940 339600 472270 354710 379080 349600 501500 399000 630520 54458 760620 366040 372070 471230 359730 394070 341650 479990 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 428360 675390 21085 757390 377940 339600 472270 354710 379080 349600 501500 399000 630520 54458 760620 366040 372070 471230 359730 394070 341650 479990 2 2 2 2 2 2 2 2 2 2 2 34741000 0 34741000 7820 1906 7295 41701;41702 50144;50145;50146 50144 3 HCQLEPDHEGVPEETDDFGEFR Unmodified 2642.098 0.097959083 3322 Q9Y5L0;Q9Y5L0-3;Q9Y5L0-1;Q9Y5L0-5 TNPO3 Transportin-3 yes no 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 46.008 45.858 4 5.5305E-27 12332 20211116_3428_TMUAki_TMT10x_P_F1 174.22 162.37 7176900 12535000 54354 13398000 8585200 8698900 6700400 11633000 11933000 9107100 10829000 6682300 11700000 602140 13537000 8183700 9217700 7057100 11604000 11872000 8998600 10480000 8 8 4 8 8 8 8 8 8 8 8 1700200 2862300 7496.3 2881600 3689300 4377400 2836700 2752500 2546600 2091600 2577300 1582900 2670900 145250 2960700 3514500 4330600 2913000 2860800 2604500 2070000 2485300 2 2 1 2 2 2 2 2 2 2 2 5476700 9673200 46858 10516000 4895900 4321500 3863700 8880900 9386300 7015500 8251500 5099400 9029300 456900 10576000 4669200 4887000 4144100 8743500 9267000 6928600 7995100 6 6 3 6 6 6 6 6 6 6 6 1426100000 637270000 788880000 7821 3322 7296 41703;41704;41705;41706 50147;50148;50149;50150;50151;50152;50153;50154 50147 8 HDAATCFVDAGNAFK Unmodified 1622.7147 0.71474038 1230 P54920 NAPA Alpha-soluble NSF attachment protein yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 51.046 51.202 3 2.9206E-08 13902 20211116_3434_TMUAki_TMT10x_P_F6 121.24 107.58 16137000 27551000 101370 31908000 25348000 27080000 18641000 21217000 19939000 19148000 22914000 15026000 25724000 1553100 32172000 24141000 27753000 19300000 21806000 20333000 18786000 22012000 6 6 3 6 6 6 6 6 6 6 6 8485800 13849000 92623 16282000 17444000 19851000 12130000 10911000 10171000 9731500 11853000 7901800 12931000 915170 16492000 16599000 19801000 12521000 11509000 10493000 9552900 11382000 3 3 2 3 3 3 3 3 3 3 3 7651500 13702000 8749.6 15626000 7903100 7229600 6511200 10307000 9767600 9416700 11061000 7124300 12793000 637900 15680000 7542900 7952100 6778100 10297000 9840300 9233500 10630000 3 3 1 3 3 3 3 3 3 3 3 1513600000 741130000 772500000 7822 1230 7297 41707;41708;41709;41710 50155;50156;50157;50158;50159;50160 50157 6 HDADGQATLLNLLLR Unmodified 1648.8897 0.88966827 203 O43242;O43242-2 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes no 0 0 0 0 By MS/MS By MS/MS 6.14 0.833 2 2 3 4 3 75.099 75.15 2;3 9.7374E-25 26151 20211116_3446_TMUAki_TMT10x_S_F7 197.06 183.39 14721000 25595000 116330 22631000 19086000 23355000 17417000 15500000 16451000 17478000 19047000 13707000 23872000 1277400 23308000 18259000 23571000 17724000 16215000 16871000 16988000 18294000 4 4 2 4 4 4 4 4 4 4 4 6777400 10883000 116330 9940100 6722000 13744000 8032300 6907200 7571000 7669700 8554500 6311300 10151000 669530 10264000 6485400 13613000 8064700 7390600 7757300 7459200 8221800 2 2 2 2 2 2 2 2 2 2 2 7943700 14713000 0 12691000 12364000 9611400 9384600 8593200 8880000 9808300 10492000 7395500 13721000 607870 13044000 11773000 9958600 9659400 8824800 9113200 9529300 10072000 2 2 0 2 2 2 2 2 2 2 2 4676100000 2350600000 2325500000 7823 203 7298 41711;41712;41713;41714;41715;41716;41717 50161;50162;50163;50164;50165;50166 50166 6 HDGAFLIR Unmodified 927.49265 0.49265 1388 P62993 GRB2 Growth factor receptor-bound protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 34.813 34.882 3 0.00078761 7385 20211116_3444_TMUAki_TMT10x_S_F5 113.5 26.22 770140 1303500 18765 1378600 1585300 1777300 1018000 1067200 1059400 1072700 1079900 717210 1216600 92755 1407000 1506900 1770000 1063600 1121000 1076700 1047400 1041100 3 3 3 3 3 3 3 3 3 3 3 558200 948760 14708 1026100 1354700 1523400 793210 738600 766620 798780 772180 519850 885580 71141 1048700 1285700 1503700 833130 792370 781270 777650 744720 2 2 2 2 2 2 2 2 2 2 2 211930 354740 4056.7 352510 230640 253840 224810 328590 292810 273880 307680 197360 331000 21613 358300 221250 266360 230450 328680 295440 269740 296340 1 1 1 1 1 1 1 1 1 1 1 80431000 42067000 38364000 7824 1388 7299 41718;41719;41720 50167;50168;50169;50170 50170 4 HDGITVAVHK Unmodified 1075.5774 0.57744226 221 O43504 LAMTOR5 Ragulator complex protein LAMTOR5 yes yes 0 0 0 0 By MS/MS By MS/MS 4.6 0.49 2 3 4 1 31.653 31.666 3;4 0.0001952 7304 20211116_3433_TMUAki_TMT10x_P_F5 109.66 91.932 2620600 4080000 10384 3973600 2457400 3702900 2308200 1804300 2022800 1799200 2768500 2440100 3806600 224660 4057200 2353200 3746300 2340300 1930200 2096800 1757400 2647600 4 4 4 4 4 4 4 4 4 4 4 2574000 4000000 8399.3 3902600 2401100 3654200 2258300 1765500 1969200 1748700 2714000 2396700 3732000 218810 3984400 2299200 3695500 2289200 1889900 2042400 1708500 2595000 3 3 3 3 3 3 3 3 3 3 3 46588 80006 1984.5 71043 56313 48752 49918 38824 53545 50575 54590 43393 74621 5848.2 72776 53955 50817 51081 40326 54351 48910 52629 1 1 1 1 1 1 1 1 1 1 1 444340000 440570000 3769100 7825 221 7300 41721;41722;41723;41724;41725 50171;50172;50173;50174;50175 50173 5 HDGSEPCVDVLFGDGHR Unmodified 1895.8221 0.82205899 2446 Q96EL3 MRPL53 39S ribosomal protein L53, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 43.764 43.74 4 0.0030237 14564 20211116_3441_TMUAki_TMT10x_S_F3 60.362 60.186 968400 1910500 17038 2133600 1807800 1845800 1354200 1475600 1288600 1233200 1615800 901800 1783500 107920 2156500 1723000 1889800 1395300 1511700 1325400 1214400 1548600 2 2 2 2 2 2 2 2 2 2 2 491410 951530 5595.8 1093200 1296700 1372400 853990 834550 736460 652880 797180 457590 888410 57234 1109400 1232500 1368800 885750 870220 756520 645120 767130 1 1 1 1 1 1 1 1 1 1 1 476990 958940 11442 1040400 511120 473310 500170 641080 552150 580310 818660 444210 895100 50687 1047200 490500 520930 509530 641520 568900 569270 781480 1 1 1 1 1 1 1 1 1 1 1 146990000 37926000 109060000 7826 2446 7301 41726;41727;41728 50176;50177 50177 2 HDGYGSHGPLLPLPSR Unmodified 1701.8587 0.8587025 2310 Q8WVV9;Q8WVV9-5;Q8WVV9-4 HNRNPLL Heterogeneous nuclear ribonucleoprotein L-like yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 37.354 37.571 4 2.4684E-07 10276 20211116_3435_TMUAki_TMT10x_P_F7 106.6 93.622 904170 1354400 17172 1494800 1546600 1766200 1190800 806370 859080 940750 1296400 842000 1264300 99964 1519000 1475100 1760900 1216200 872320 904000 913250 1237100 3 3 3 3 3 3 3 3 3 3 3 904170 1354400 17172 1494800 1546600 1766200 1190800 806370 859080 940750 1296400 842000 1264300 99964 1519000 1475100 1760900 1216200 872320 904000 913250 1237100 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 53840000 53840000 0 7827 2310 7302 41729;41730 50178;50179;50180 50179 3 HDIAFVEFENDGQAGAAR Unmodified 1945.8919 0.89185312 559 P08579 SNRPB2 U2 small nuclear ribonucleoprotein B'' yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.894 2 1 2 2 3 50.645 50.424 3 2.0972E-31 17281 20211116_3441_TMUAki_TMT10x_S_F3 188.47 176.32 11307000 19789000 376660 23244000 12728000 11530000 10190000 17499000 16437000 14910000 17424000 10531000 18478000 1308400 23293000 12163000 12603000 10662000 17413000 16483000 14669000 16777000 7 7 7 7 7 7 7 7 7 7 7 1324000 2350700 184590 2746100 2587200 3495700 2382200 1829100 2118600 1590400 2271500 1234100 2195000 299500 2784700 2486800 3477500 2418900 1936600 2172200 1563100 2186500 1 1 1 1 1 1 1 1 1 1 1 9983300 17438000 192060 20498000 10141000 8034600 7808000 15670000 14318000 13320000 15152000 9296800 16283000 1008900 20509000 9676300 9125500 8243500 15477000 14311000 13105000 14591000 6 6 6 6 6 6 6 6 6 6 6 1640600000 528420000 1112200000 7828 559 7303 41731;41732;41733;41734;41735 50181;50182;50183;50184;50185;50186;50187;50188 50188 8 HDLDLICR Unmodified 1040.5073 0.50731378 1333;1334;957 P62140;P36873;P36873-2;P62136;P62136-2;P62136-3 PPP1CB;PPP1CC;PPP1CA Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit no no 0 0 0 0 By MS/MS By MS/MS 3.5 0.764 1 1 4 1 5 35.982 35.981 3 0.00021452 12138 20211116_3441_TMUAki_TMT10x_S_F3 137.9 97.859 666000 1076200 3991.6 1228700 692770 573430 667880 729850 683850 662630 960690 620110 1004800 54975 1232900 663590 628110 679260 732150 704830 649930 918170 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 666000 1076200 3991.6 1228700 692770 573430 667880 729850 683850 662630 960690 620110 1004800 54975 1232900 663590 628110 679260 732150 704830 649930 918170 4 4 2 4 4 4 4 4 4 4 4 47664000 0 47664000 7829 1334;957;1333 7304 41736;41737;41738;41739;41740;41741 50189;50190;50191;50192;50193;50194 50191 6 HDLPPYR Unmodified 896.45045 0.45045083 2181 Q8N163;Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 29.831 29.568 3 0.056687 6204 20211116_3431_TMUAki_TMT10x_P_F4 49.058 11.45 256120 451340 21614 414090 292510 282070 360800 360350 362160 371490 398590 238640 421010 41887 423100 283500 297250 362450 362760 369670 362360 383380 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 256120 451340 21614 414090 292510 282070 360800 360350 362160 371490 398590 238640 421010 41887 423100 283500 297250 362450 362760 369670 362360 383380 1 1 1 1 1 1 1 1 1 1 1 5596000 0 5596000 7830 2181 7305 41742;41743 50195;50196 50195 2 HDPNMKYELQLANPK Oxidation (M) 1812.8829 0.88286834 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 1 1 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 40.397 40.703 4 1.2994E-05 11766 20211116_3435_TMUAki_TMT10x_P_F7 100.42 83.754 2358000 3930700 26586 4983700 5622300 5872300 3152900 5077600 5329400 3964600 3906500 2195500 3671700 233930 5023100 5328400 5909700 3394600 5169400 5276000 3917900 3812500 3 3 2 3 3 3 3 3 3 3 3 1617200 2748600 24568 3305100 4970100 5360800 2649800 3761200 3723100 3064500 2677100 1505700 2566800 171870 3363100 4706600 5298500 2842300 3884000 3703500 3021700 2614900 2 2 1 2 2 2 2 2 2 2 2 740880 1182000 2018.1 1678600 652230 511480 503070 1316500 1606300 900120 1229300 689850 1104800 62063 1660000 621760 611140 552240 1285400 1572500 896260 1197600 1 1 1 1 1 1 1 1 1 1 1 657200000 567810000 89390000 7831 1997 7306 41744;41745 50197;50198;50199 50198 2548 3 HDVVFLITK Unmodified 1070.6124 0.61243078 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 54.971 55.301 3 0.000537 16320 20211116_3436_TMUAki_TMT10x_P_F8 98.044 80.18 12666000 19054000 277990 24904000 16283000 17721000 12904000 11756000 10584000 10661000 15437000 11796000 17801000 1359900 24885000 15545000 18362000 13194000 12221000 11041000 10457000 14742000 5 5 5 5 5 5 5 5 5 5 5 7534700 10802000 120230 14444000 12362000 13879000 8388400 6643500 6033700 6042600 8908600 7016500 10093000 804350 14469000 11761000 14011000 8643600 7101800 6343300 5926300 8504800 3 3 3 3 3 3 3 3 3 3 3 5131600 8251600 157760 10460000 3920700 3842100 4516000 5112400 4550200 4618400 6528700 4779200 7707900 555510 10416000 3783800 4350900 4550700 5119000 4697700 4531000 6236700 2 2 2 2 2 2 2 2 2 2 2 1519400000 722520000 796830000 7832 1471 7307 41746;41747;41748;41749 50200;50201;50202;50203;50204 50202 5 HEAFFIR Unmodified 918.47119 0.47118627 1922 Q5JVF3;Q5JVF3-3;Q5JVF3-2;Q5JVF3-4 PCID2 PCI domain-containing protein 2 yes no 0 0 0 0 By MS/MS 6 0 1 1 36.192 36.18 3 0.056687 7942 20211116_3434_TMUAki_TMT10x_P_F6 49.058 29.698 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7833 1922 7308 41750 50205 50205 1 HEANNPQLK Unmodified 1049.5254 0.52540669 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 25.814 25.701 3 0.0004211 8012 20211116_3441_TMUAki_TMT10x_S_F3 102.07 74.325 549800 895680 15546 781450 558150 873720 654310 430820 519880 470000 702050 512030 835340 59688 806650 538510 874440 654500 461550 541230 457420 671610 2 2 1 2 2 2 2 2 2 2 2 345200 553810 0 446310 344890 669740 380120 335410 405490 370790 466810 321410 516360 28115 466240 331550 660990 384510 358960 413580 360670 448420 1 1 0 1 1 1 1 1 1 1 1 204600 341870 15546 335140 213260 203980 274190 95408 114390 99218 235240 190620 318980 31573 340410 206960 213450 269990 102600 127650 96744 223190 1 1 1 1 1 1 1 1 1 1 1 13023000 7988700 5034000 7834 897 7309 41751;41752 50206;50207 50207 2 HECQANGPEDLNR Unmodified 1538.6532 0.65320275 1282 P60981;P60981-2 DSTN Destrin yes no 0 0 0 0 By MS/MS 3 0 1 1 26.588 26.295 3 1.4197E-06 7633 20211116_3441_TMUAki_TMT10x_S_F3 114.7 101.72 17746 30205 0 18573 13668 13345 16106 17332 11469 10413 16945 16523 28141 0 19691 13166 14007 16066 17214 12065 10455 16177 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17746 30205 0 18573 13668 13345 16106 17332 11469 10413 16945 16523 28141 0 19691 13166 14007 16066 17214 12065 10455 16177 1 1 0 1 1 1 1 1 1 1 1 2375800 0 2375800 7835 1282 7310 41753 50208 50208 1 HEEEFDLFMR Oxidation (M) 1367.5816 0.58160094 1154 P51532-5;P51532-2;P51532-3;P51532-4;P51532 SMARCA4 Transcription activator BRG1 yes no 0 0 1 0 By MS/MS By MS/MS 2.25 0.829 1 1 2 3 1 48.366 48.139 3 0.00049686 16348 20211116_3441_TMUAki_TMT10x_S_F3 91.095 84.207 10976000 15427000 40133 16167000 15326000 17727000 11473000 11746000 11577000 11320000 12758000 10219000 14398000 842710 16464000 14590000 17829000 11842000 12231000 11815000 11074000 12270000 3 3 1 3 3 3 3 3 3 3 3 9495900 12918000 0 13467000 13848000 16536000 10010000 9980300 9680600 9659200 10556000 8840300 12056000 682600 13746000 13171000 16509000 10344000 10469000 9893800 9446900 10156000 2 2 0 2 2 2 2 2 2 2 2 1480400 2509200 40133 2700500 1478500 1191000 1463300 1765300 1896700 1661200 2201600 1378700 2342100 160110 2718900 1419700 1319300 1498500 1762700 1921500 1626700 2114400 1 1 1 1 1 1 1 1 1 1 1 986660000 820870000 165790000 7836 1154 7311 41754;41755;41756;41757 50209;50210;50211;50212 50212 1539 4 HEEEFDLFMR Unmodified 1351.5867 0.58668632 1154 P51532-5;P51532-2;P51532-3;P51532-4;P51532 SMARCA4 Transcription activator BRG1 yes no 0 0 0 0 By matching By MS/MS 1 0 2 1 1 54.85 54.7 3 2.0858E-05 18073 20211116_3439_TMUAki_TMT10x_S_F1 131.46 120.6 856160 1295300 1271 1468300 716740 658520 715110 1039100 955910 866890 1062500 797180 1209300 70214 1473500 687280 729360 732910 1032100 965720 853750 1021600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 856160 1295300 1271 1468300 716740 658520 715110 1039100 955910 866890 1062500 797180 1209300 70214 1473500 687280 729360 732910 1032100 965720 853750 1021600 1 1 1 1 1 1 1 1 1 1 1 225270000 137000000 88267000 7837 1154 7311 41758;41759 50213 50213 1 HEFSVDMTCGGCAEAVSR Oxidation (M) 2027.8135 0.8135445 76 O00244 ATOX1 Copper transport protein ATOX1 yes yes 0 0 1 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 34.701 34.54 3 1.9184E-18 10784 20211116_3441_TMUAki_TMT10x_S_F3 159.14 154.13 571190 910110 8785.4 971730 850130 771970 611050 674890 678600 581390 767780 531900 849460 56092 983990 809660 796570 634410 688280 690560 571670 737890 4 4 3 4 4 4 4 4 4 4 4 164670 234110 1743.4 295740 424220 398110 216540 218130 225950 170910 241300 153340 218680 15554 298880 401640 395210 230800 229450 230000 168860 232300 2 2 1 2 2 2 2 2 2 2 2 406520 676000 7041.9 675990 425910 373850 394510 456760 452650 410490 526480 378570 630780 40538 685100 408020 401360 403610 458830 460570 402810 505590 2 2 2 2 2 2 2 2 2 2 2 56462000 30629000 25833000 7838 76 7312 41760;41761;41762 50214;50215;50216;50217 50216 45 4 HEGALETLLR Unmodified 1137.6142 0.6142217 2301 Q8WUM4;Q8WUM4-2;Q8WUM4-3 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 42.49 42.661 3 0.027609 11834 20211116_3442_TMUAki_TMT10x_S_F4 50.648 32.336 1718100 3098700 27592 3013800 1811000 1409900 1747300 2196900 1900300 1876900 2161600 1599900 2891100 169460 3056600 1736600 1552900 1780400 2184300 1935800 1846300 2077100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1718100 3098700 27592 3013800 1811000 1409900 1747300 2196900 1900300 1876900 2161600 1599900 2891100 169460 3056600 1736600 1552900 1780400 2184300 1935800 1846300 2077100 1 1 1 1 1 1 1 1 1 1 1 78473000 0 78473000 7839 2301 7313 41763;41764 50218 50218 1 HEGVFICR Unmodified 1016.4862 0.48618441 765 P22087 FBL rRNA 2'-O-methyltransferase fibrillarin yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 31.641 31.624 3 0.0043789 7042 20211116_3431_TMUAki_TMT10x_P_F4 80.684 57.97 812070 1265200 15687 1261600 1617200 1673400 1089800 723010 874320 777130 1041900 756240 1180600 93222 1293500 1538300 1658000 1126300 784690 904840 756750 999860 2 2 2 2 2 2 2 2 2 2 2 812070 1265200 15687 1261600 1617200 1673400 1089800 723010 874320 777130 1041900 756240 1180600 93222 1293500 1538300 1658000 1126300 784690 904840 756750 999860 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72867000 72867000 0 7840 765 7314 41765;41766 50219;50220 50219 2 HEHQVMLMR Oxidation (M) 1195.559 0.55903178 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 1 0 By MS/MS By MS/MS 4 0 2 1 1 23.698 23.77 3 0.053784 4165 20211116_3431_TMUAki_TMT10x_P_F4 40.331 20.854 2280300 3633500 40689 3530700 2312300 2686100 2455600 2441800 2424800 2186200 2927000 2123400 3390100 227420 3596500 2223200 2783000 2482300 2487400 2486000 2145700 2808000 2 2 2 2 2 2 2 2 2 2 2 429240 606070 8807.2 594970 471330 693330 417930 401590 400410 354380 502210 399730 565480 44384 609220 451130 693690 426180 421620 411720 348050 481320 1 1 1 1 1 1 1 1 1 1 1 1851000 3027400 31882 2935700 1840900 1992800 2037600 2040200 2024400 1831800 2424700 1723700 2824600 183030 2987300 1772000 2089300 2056200 2065700 2074200 1797700 2326700 1 1 1 1 1 1 1 1 1 1 1 43805000 18279000 25526000 7841 1779 7315 41767;41768 50221 50221 2389 1 HEHQVMLMR Unmodified 1179.5641 0.56411716 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 0 By MS/MS 4.5 0.5 2 2 4 29.199 29.185 3;4 0.042144 6385 20211116_3433_TMUAki_TMT10x_P_F5 43.308 25.46 392660 556420 8001.4 627550 1084200 761200 449110 407440 441300 373620 482310 365670 519470 49697 637180 1024100 759270 488520 431100 450750 366290 464000 2 2 2 2 2 2 2 2 2 2 2 392660 556420 8001.4 627550 1084200 761200 449110 407440 441300 373620 482310 365670 519470 49697 637180 1024100 759270 488520 431100 450750 366290 464000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16558000 16558000 0 7842 1779 7315 41769;41770;41771;41772 50222;50223 50223 2 HEILSRDPLLLAIIPK Unmodified 1827.0982 0.098204487 2852 Q9HAV4 XPO5 Exportin-5 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0 3 1 2 70.688 70.466 3;4 1.6462E-07 22634 20211116_3440_TMUAki_TMT10x_S_F2 114.27 100.37 4410800 7633500 7321.9 6379700 4170700 7026800 5247800 4177800 4840900 4986400 5308400 4106600 7118200 330750 6606600 4024000 7054500 5254200 4415600 4959200 4836700 5106400 2 2 1 2 2 2 2 2 2 2 2 2469700 4098700 0 3323300 2481700 4615500 2752700 2146200 2691300 2742300 2813800 2299200 3821600 166520 3464400 2383800 4566800 2776100 2324600 2744900 2653700 2710500 1 1 0 1 1 1 1 1 1 1 1 1941100 3534800 7321.9 3056400 1689000 2411300 2495100 2031500 2149600 2244100 2494700 1807500 3296600 164230 3142200 1640200 2487700 2478100 2091000 2214200 2183000 2395900 1 1 1 1 1 1 1 1 1 1 1 1608300000 742800000 865520000 7843 2852 7316 41773;41774;41775 50224;50225;50226 50225 3 HEKEDGAISTIVLR Unmodified 1566.8366 0.83657007 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 1 By MS/MS By MS/MS 4 0.632 1 3 1 2 3 39.306 39.327 3;4 6.5945E-14 10238 20211116_3431_TMUAki_TMT10x_P_F4 148.41 128.72 5890400 9648900 152130 11383000 10840000 9584000 6977300 8117600 8677800 7307200 9053300 5485700 9010000 698360 11463000 10305000 9841600 7332000 8303200 8767100 7170000 8721800 7 7 6 7 7 7 7 7 7 7 7 2717500 4443600 80707 5350200 7846800 6719100 3963200 3685600 3925400 3395200 4180100 2530900 4149700 372350 5414500 7431100 6692400 4221900 3891600 4004100 3327900 4024500 2 2 2 2 2 2 2 2 2 2 2 3172900 5205400 71424 6033000 2992700 2864900 3014200 4432100 4752400 3912000 4873300 2954800 4860200 326000 6048800 2874400 3149200 3110100 4411600 4763000 3842100 4697300 5 5 4 5 5 5 5 5 5 5 5 1403700000 708520000 695170000 7844 1146 7317 41776;41777;41778;41779;41780 50227;50228;50229;50230;50231;50232;50233 50228 7 HELIEFR Unmodified 942.49232 0.49231565 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 1.11 2 1 2 1 3 3 37.612 37.478 3 0.0017742 12224 20211116_3441_TMUAki_TMT10x_S_F3 111.82 65.445 594710 886660 81061 1222200 514410 796280 830740 626760 679660 802200 864990 554340 828600 123730 1216800 506110 833650 821440 651050 704630 776240 828690 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 594710 886660 81061 1222200 514410 796280 830740 626760 679660 802200 864990 554340 828600 123730 1216800 506110 833650 821440 651050 704630 776240 828690 3 3 3 3 3 3 3 3 3 3 3 110300000 30275000 80027000 7845 1471 7318 41781;41782;41783;41784;41785;41786 50234;50235;50236;50237;50238;50239 50236 6 HELLLGAGSGPGAGQQQATPGALLQAGPPR Unmodified 2848.4944 0.49438792 2436 Q96DI7;Q96DI7-2 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes no 0 0 0 0 By MS/MS By MS/MS 1 0 3 1 2 58.789 58.589 3;4 6.0073E-57 19632 20211116_3439_TMUAki_TMT10x_S_F1 200.2 187.72 6627000 11644000 166250 11575000 7123900 9521700 7236800 8439400 8290300 8497300 8922100 6171600 10865000 646330 11782000 6842900 9802400 7367300 8636900 8410300 8296500 8587300 6 6 4 6 6 6 6 6 6 6 6 2094000 3510800 23624 3626300 2627200 4877400 2861100 2228200 2426100 2656800 2783000 1949800 3276400 191740 3710000 2525700 4832000 2876400 2412000 2499900 2577100 2673600 2 2 1 2 2 2 2 2 2 2 2 4533000 8133200 142630 7948600 4496700 4644300 4375800 6211200 5864200 5840600 6139100 4221700 7588500 454590 8072500 4317200 4970300 4490900 6224900 5910400 5719500 5913600 4 4 3 4 4 4 4 4 4 4 4 1434700000 465010000 969690000 7846 2436 7319 41787;41788;41789 50240;50241;50242;50243;50244;50245 50245 6 HELLQPFNVLYEK Unmodified 1628.8562 0.85624288 3217 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 0 0 By MS/MS By MS/MS 6.08 2.34 2 1 2 4 4 6 7 67.158 67.286 2;3 1.4094E-22 22330 20211116_3435_TMUAki_TMT10x_P_F7 208.72 179.76 181440000 308530000 1025300 292460000 209110000 253010000 211820000 163000000 145280000 169280000 219450000 168930000 287830000 14300000 297830000 200530000 258160000 212660000 170460000 153340000 165070000 209400000 22 22 9 21 21 22 22 22 22 22 22 81348000 136850000 122520 117200000 88192000 156800000 96080000 73603000 61023000 73987000 90409000 75735000 127620000 5333000 120470000 84689000 155420000 95961000 79045000 64657000 72244000 86304000 9 9 3 8 8 9 9 9 9 9 9 100090000 171680000 902760 175260000 120920000 96211000 115740000 89398000 84259000 95296000 129040000 93200000 160210000 8967300 177360000 115840000 102740000 116700000 91414000 88685000 92828000 123090000 13 13 6 13 13 13 13 13 13 13 13 40925000000 21172000000 19753000000 7847 3217 7320 41790;41791;41792;41793;41794;41795;41796;41797;41798;41799;41800;41801;41802 50246;50247;50248;50249;50250;50251;50252;50253;50254;50255;50256;50257;50258;50259;50260;50261;50262;50263;50264;50265;50266;50267 50252 22 HELQANCYEEVK Unmodified 1518.6773 0.67729224 787 P23528 CFL1 Cofilin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.71 1.39 2 1 2 1 1 4 3 35.543 35.498 3 5.7018E-12 8594 20211116_3431_TMUAki_TMT10x_P_F4 163.71 141.52 4718000 6554800 32568 11952000 13664000 6013500 5008100 2312600 3542800 2477400 5794300 4392900 6136500 513900 11723000 12884000 6409300 5487200 2543000 3748200 2412800 5519800 6 6 4 6 6 6 6 6 6 6 6 3570500 4916500 15635 8870200 13000000 5382200 3822800 1727400 2627400 1924000 4364700 3324300 4602400 409750 8717600 12233000 5616000 4320500 1946600 2786900 1870900 4156700 4 4 2 4 4 4 4 4 4 4 4 1147500 1638300 16933 3081600 664120 631300 1185300 585250 915350 553470 1429500 1068500 1534100 104150 3005200 650920 793230 1166700 596410 961270 541860 1363100 2 2 2 2 2 2 2 2 2 2 2 691200000 496770000 194430000 7848 787 7321 41803;41804;41805;41806;41807;41808;41809 50268;50269;50270;50271;50272;50273;50274 50271 7 HELQANCYEEVKDR Unmodified 1789.8053 0.8053463 787 P23528 CFL1 Cofilin-1 yes yes 0 0 0 1 By MS/MS By MS/MS 3.17 1.34 1 1 1 2 1 5 1 33.158 33.081 3;4 6.3187E-19 7661 20211116_3431_TMUAki_TMT10x_P_F4 165.75 126.24 3205600 5937100 15624 5806300 12406000 10949000 6094500 6736300 7188200 4474800 6661700 2984800 5539500 221600 6009500 11737000 10742000 6545800 6993900 7246200 4463500 6442600 5 5 2 5 5 5 5 5 5 5 5 2334800 4490700 15624 4318200 11425000 9764100 4907100 5025100 5378600 3242100 4747400 2174000 4189700 155440 4498900 10792000 9504600 5332900 5295000 5428800 3239800 4599200 4 4 2 4 4 4 4 4 4 4 4 870890 1446400 0 1488100 980310 1185200 1187400 1711200 1809500 1232700 1914400 810820 1349800 66154 1510600 944680 1237900 1212900 1699000 1817400 1223600 1843500 1 1 0 1 1 1 1 1 1 1 1 846670000 693370000 153290000 7849 787 7322 41810;41811;41812;41813;41814;41815 50275;50276;50277;50278;50279 50278 5 HELSTEYIPDPER Unmodified 1584.742 0.74200098 1726 Q14690 PDCD11 Protein RRP5 homolog yes yes 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 41.104 40.981 3 4.2522E-05 10547 20211116_3440_TMUAki_TMT10x_S_F2 97.69 87.638 533700 833580 18787 1024700 460820 409400 400660 700670 806160 629230 795680 497070 778530 60736 1022700 441480 461560 422110 695550 802010 617480 767890 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 533700 833580 18787 1024700 460820 409400 400660 700670 806160 629230 795680 497070 778530 60736 1022700 441480 461560 422110 695550 802010 617480 767890 1 1 1 1 1 1 1 1 1 1 1 111400000 0 111400000 7850 1726 7323 41816;41817 50280 50280 1 HEMLPASLIQAQR Oxidation (M) 1508.7769 0.7769467 1170 P52209;P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 1 0 By MS/MS By MS/MS 6 0.577 2 8 2 3 9 34.455 34.65 3 7.8661E-15 8998 20211116_3434_TMUAki_TMT10x_P_F6 167.83 155.07 3783400 6196700 33446 6653300 8392200 7571300 4429300 4855800 5691600 4433300 5469300 3522600 5783900 278780 6769000 7946200 7595500 4739200 5061500 5727100 4347200 5282900 11 11 5 11 11 11 11 11 11 11 11 2855000 4611800 5752.4 4801300 7491900 6769000 3665200 3458700 4276800 3303900 4061400 2657900 4304000 180560 4914200 7084600 6700000 3936800 3679000 4316500 3233200 3924600 5 5 1 5 5 5 5 5 5 5 5 928500 1584900 27694 1852000 900320 802320 764190 1397200 1414800 1129400 1407900 864730 1479800 98217 1854800 861530 895460 802410 1382500 1410600 1114000 1358400 6 6 4 6 6 6 6 6 6 6 6 553320000 260890000 292430000 7851 1170 7324 41818;41819;41820;41821;41822;41823;41824;41825;41826;41827;41828;41829 50281;50282;50283;50284;50285;50286;50287;50288;50289;50290;50291;50292;50293;50294;50295;50296;50297 50283 1558 17 HEMLPASLIQAQR Unmodified 1492.782 0.78203208 1170 P52209;P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 1 4 45.741 45.928 3 3.2808E-06 11965 20211116_3447_TMUAki_TMT10x_S_F8 105.66 80.868 2988400 4830200 63697 4935200 4244700 4482700 3626000 4761200 4313600 4150800 4624300 2783000 4507500 324720 5020600 4058300 4600800 3731700 4808600 4369300 4079000 4451300 2 2 2 2 2 2 2 2 2 2 2 1226700 2040500 19453 2230500 2443500 2848000 1801400 2072100 1937400 1871900 1925300 1142400 1904700 136870 2271300 2328000 2845900 1865000 2139900 1964600 1836400 1857600 1 1 1 1 1 1 1 1 1 1 1 1761700 2789700 44244 2704700 1801200 1634600 1824600 2689200 2376200 2278900 2699100 1640600 2602800 187840 2749200 1730400 1754900 1866700 2668600 2404700 2242600 2593700 1 1 1 1 1 1 1 1 1 1 1 738420000 214200000 524220000 7852 1170 7324 41830;41831;41832;41833;41834 50298;50299;50300 50300 3 HEMLPEFYK Oxidation (M) 1208.5536 0.55359527 2116 Q86VP6;Q86VP6-2;Q86VP6-3 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 1 0 By MS/MS By MS/MS 4.29 1.03 2 2 2 1 4 3 44.009 44.109 3 1.0538E-05 12298 20211116_3442_TMUAki_TMT10x_S_F4 107.15 92.735 9307500 15442000 12219 18310000 21362000 22280000 12328000 18095000 18956000 14264000 16168000 8665000 14419000 522480 18536000 20247000 22358000 13183000 18494000 18895000 14089000 15683000 6 6 2 6 6 6 6 6 6 6 6 5991700 10117000 9807.6 11240000 18765000 19544000 9872300 11547000 12054000 8726500 10395000 5577700 9444000 257030 11512000 17759000 19218000 10546000 12060000 12109000 8638900 10079000 4 4 1 4 4 4 4 4 4 4 4 3315800 5325100 2410.9 7069500 2597900 2735300 2455900 6547500 6901800 5537500 5773700 3087300 4975400 265450 7024000 2487500 3139600 2636200 6434400 6786800 5449800 5604600 2 2 1 2 2 2 2 2 2 2 2 1793200000 1070400000 722770000 7853 2116 7325 41835;41836;41837;41838;41839;41840;41841 50301;50302;50303;50304;50305;50306;50307;50308;50309 50307 2601 9 HEMLPEFYK Unmodified 1192.5587 0.55868065 2116 Q86VP6;Q86VP6-2;Q86VP6-3 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.25 0.829 1 1 2 3 1 49.879 50.026 3 0.00053731 13873 20211116_3445_TMUAki_TMT10x_S_F6 98.033 81.809 9953100 15940000 133440 19318000 15655000 13965000 11881000 9176700 8115900 9026100 12892000 9268300 14886000 1024800 19389000 14924000 14449000 12132000 9567400 8590700 8821600 12288000 4 4 3 4 4 4 4 4 4 4 4 5111100 8182600 92000 9948000 11603000 10460000 7874500 4879000 4299400 4856300 6837800 4759600 7641800 600400 10032000 11037000 10499000 8071700 5241600 4620500 4743900 6517600 2 2 2 2 2 2 2 2 2 2 2 4842000 7757300 41437 9369600 4052700 3505600 4006400 4297700 3816400 4169800 6053800 4508700 7244400 424410 9357000 3887000 3950700 4060400 4325800 3970300 4077700 5770600 2 2 1 2 2 2 2 2 2 2 2 862960000 604950000 258000000 7854 2116 7325 41842;41843;41844;41845 50310;50311;50312;50313;50314 50313 5 HEMPPHIYAISESAYR Oxidation (M) 1915.8887 0.888682 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 1 0 By MS/MS By MS/MS 4.8 0.4 1 4 3 2 35.775 35.806 3;4 4.0824E-11 7739 20211116_3444_TMUAki_TMT10x_S_F5 136.57 121.02 1735700 2535500 10798 2986200 4917800 3786800 2210100 2457400 2785300 1954400 2852400 1616100 2367600 191500 3026500 4647500 3778500 2401200 2550600 2810800 1929500 2749500 4 4 3 4 4 4 4 4 4 4 4 1518400 2154300 6734.1 2589000 4696800 3588000 1987300 2133500 2419700 1670500 2490500 1413800 2011800 169640 2625500 4435300 3560900 2170800 2228800 2445200 1650600 2400300 3 3 2 3 3 3 3 3 3 3 3 217280 381150 4063.5 397140 220970 198820 222870 323920 365610 283910 361820 202340 355710 21853 401050 212170 217590 230390 321830 365560 278930 349150 1 1 1 1 1 1 1 1 1 1 1 533350000 442910000 90434000 7855 935 7326 41846;41847;41848;41849;41850 50315;50316;50317;50318;50319 50318 1187 5 HEMPPHIYAITDTAYR Oxidation (M) 1929.9043 0.90433206 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 1 0 By MS/MS By MS/MS 4.75 0.433 1 3 3 1 37.499 37.538 3;4 4.2392E-11 9709 20211116_3433_TMUAki_TMT10x_P_F5 136.39 118.03 4406100 7368900 63528 6902800 8571100 9422200 5976700 7197300 6769700 5777500 6690400 4102700 6874200 450900 7112600 8154900 9393300 6222600 7387500 6849500 5701100 6456500 6 6 3 6 6 6 6 6 6 6 6 3692200 6288900 58302 5740000 8004000 8758700 5310200 6152200 5719400 4877400 5612300 3438000 5866100 392090 5939700 7608600 8678000 5539900 6348500 5796800 4816000 5417300 4 4 2 4 4 4 4 4 4 4 4 713920 1080100 5225.6 1162800 567030 663440 666510 1045100 1050300 900090 1078100 664750 1008100 58812 1172900 546310 715250 682750 1039000 1052700 885050 1039100 2 2 1 2 2 2 2 2 2 2 2 523970000 391990000 131980000 7856 934 7327 41851;41852;41853;41854 50320;50321;50322;50323;50324;50325 50322 1172 6 HEPGLGGPAER Unmodified 1118.5469 0.54687041 1815 Q15554;Q15554-4 TERF2 Telomeric repeat-binding factor 2 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 27.369 27.109 3 0.021147 6319 20211116_3429_TMUAki_TMT10x_P_F2 53.448 36.816 144500 201360 5142.6 208740 165950 220500 155570 86447 97041 102110 161560 134580 187920 17073 212610 159170 220890 156530 95127 103570 99080 153860 1 1 1 1 1 1 1 1 1 1 1 144500 201360 5142.6 208740 165950 220500 155570 86447 97041 102110 161560 134580 187920 17073 212610 159170 220890 156530 95127 103570 99080 153860 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6665000 5140100 1524900 7857 1815 7328 41855;41856;41857 50326;50327 50326 2 HEPLVLFCESCDTLTCR Unmodified 2135.9438 0.94383039 1615 Q13263;Q13263-2 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.957 1 2 2 1 3 3 58.014 58.105 3 2.656E-29 17681 20211116_3431_TMUAki_TMT10x_P_F4 182.35 171.56 13909000 22796000 76246 28010000 16838000 18524000 14584000 14240000 14072000 14093000 18462000 12950000 21290000 1147000 28065000 16086000 19360000 14895000 14691000 14494000 13770000 17674000 6 6 3 6 6 6 6 6 6 6 6 6253700 10540000 12193 12418000 9601600 12741000 7746600 6639100 6705800 6447100 8500600 5822200 9842100 484050 12540000 9154500 12823000 7922500 7052400 6931200 6304400 8144700 3 3 1 3 3 3 3 3 3 3 3 7655500 12256000 64054 15592000 7236900 5783000 6837100 7601300 7365800 7646100 9961800 7128300 11448000 662910 15524000 6931200 6537300 6972400 7638100 7562400 7465700 9529400 3 3 2 3 3 3 3 3 3 3 3 3605300000 2244200000 1361100000 7858 1615 7329 41858;41859;41860;41861;41862;41863 50328;50329;50330;50331;50332;50333;50334 50328 7 HEQILVLDPPTDLK Unmodified 1616.8774 0.87737225 3050 Q9P0L0;Q9P0L0-2 VAPA Vesicle-associated membrane protein-associated protein A yes no 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 58.226 58.303 3 0.00029847 16913 20211116_3444_TMUAki_TMT10x_S_F5 80.534 53.198 82757000 139190000 932710 135930000 117030000 139170000 98717000 106220000 91608000 91944000 110660000 77062000 129860000 8177100 138950000 111810000 140830000 100870000 109230000 94183000 90385000 106160000 12 12 11 12 12 12 12 12 12 12 12 46694000 78361000 431560 73959000 67087000 101830000 59794000 57649000 50390000 50415000 61629000 43480000 73102000 4559100 76178000 64169000 101030000 60742000 60627000 52074000 49535000 59103000 6 6 6 6 6 6 6 6 6 6 6 36063000 60826000 501150 61967000 49943000 37333000 38923000 48570000 41218000 41529000 49036000 33582000 56762000 3618100 62767000 47639000 39805000 40128000 48605000 42109000 40849000 47061000 6 6 5 6 6 6 6 6 6 6 6 5873400000 3223300000 2650100000 7859 3050 7330 41864;41865;41866;41867;41868;41869 50335;50336;50337;50338;50339;50340;50341;50342;50343;50344;50345;50346 50344 12 HEQNIDCGGGYVK Unmodified 1475.6463 0.64632646 832 P27797 CALR Calreticulin yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 32.254 32.108 3 2.1579E-19 7250 20211116_3431_TMUAki_TMT10x_P_F4 188.48 175.28 2599800 4486100 54439 4075700 7820800 4173600 3013200 1892600 2201100 1894400 3326200 2421100 4184500 339400 4188300 7381300 4194400 3282600 2039400 2314700 1850100 3173900 4 4 4 4 4 4 4 4 4 4 4 2343500 4005400 50636 3639400 7526000 3921100 2642600 1713100 1977300 1703200 2960800 2182400 3736100 314060 3742800 7096600 3927600 2915200 1852900 2075600 1663800 2825700 3 3 3 3 3 3 3 3 3 3 3 256350 480690 3803.2 436270 294740 252450 370590 179500 223770 191180 365440 238720 448370 25336 445460 284750 266880 367390 186540 239100 186240 348140 1 1 1 1 1 1 1 1 1 1 1 328300000 265800000 62498000 7860 832 7331 41870;41871;41872 50347;50348;50349;50350 50348 4 HESGASIKIDEPLEGSEDR Unmodified 2067.9709 0.9708913 1329;1330 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 1 By MS/MS By MS/MS 4.25 0.829 1 1 2 2 2 37.118 37.096 4 2.1671E-31 8333 20211116_3444_TMUAki_TMT10x_S_F5 187.47 172.77 4054300 6282300 10572 6746500 6107100 6871500 4931100 3962100 3938000 3692400 4742600 3774900 5863800 365480 6851600 5826200 6927100 5032500 4167200 4078300 3617300 4550100 5 5 3 5 5 5 5 5 5 5 5 3429600 5217200 4399.7 5499500 5491800 6250100 4318800 3215100 3088800 2918900 3874800 3193300 4869200 311720 5601700 5236200 6252600 4404000 3413200 3224000 2863000 3713500 3 3 2 3 3 3 3 3 3 3 3 624710 1065100 6171.9 1246900 615290 621450 612220 747060 849210 773430 867800 581680 994540 53755 1249900 590020 674500 628500 754010 854220 754290 836560 2 2 1 2 2 2 2 2 2 2 2 439730000 278190000 161540000 7861 1329;1330 7332 41873;41874;41875;41876 50351;50352;50353;50354;50355 50355 5 HEVININLK Unmodified 1078.6135 0.61349341 1432 P78417;P78417-2;P78417-3 GSTO1 Glutathione S-transferase omega-1 yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 44.06 44.319 3 0.0028191 11196 20211116_3434_TMUAki_TMT10x_P_F6 74.165 45.469 6555300 11019000 276970 11678000 8908400 9305900 7500200 8109100 7528800 7313800 9076200 6105700 10284000 832050 11831000 8523000 9599600 7682300 8281400 7712900 7175800 8707500 4 4 3 4 4 4 4 4 4 4 4 2370100 3837000 51172 4278600 4979300 5183000 2994300 2906400 3020500 2537100 3404800 2207200 3582000 278220 4347200 4727400 5173200 3141900 3058800 3085300 2493100 3272600 2 2 1 2 2 2 2 2 2 2 2 4185200 7181700 225800 7399200 3929200 4122900 4505900 5202700 4508300 4776700 5671400 3898500 6702100 553840 7484000 3795600 4426500 4540400 5222500 4627600 4682700 5435000 2 2 2 2 2 2 2 2 2 2 2 389670000 123810000 265860000 7862 1432 7333 41877;41878;41879 50356;50357;50358;50359 50356 4 HEVSGETVVFQGGALGK Unmodified 1713.8686 0.86859848 1953 Q5VYK3 ECM29 Proteasome-associated protein ECM29 homolog yes yes 0 0 0 0 By MS/MS 5 0 1 1 47.482 47.654 3 0.0090996 12576 20211116_3444_TMUAki_TMT10x_S_F5 52.112 30.481 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7863 1953 7334 41880 50360 50360 1 HEVTAVFAADAMAR Oxidation (M) 1503.714 0.7140121 8 A1L0T0 ILVBL Acetolactate synthase-like protein yes yes 0 0 1 0 By MS/MS 4.5 0.5 1 1 2 38.84 38.996 3 0.012097 9105 20211116_3444_TMUAki_TMT10x_S_F5 53.038 40.462 899410 1445900 15173 1888000 902140 807650 840360 1459700 1442000 1139900 1341900 837510 1350900 83762 1878700 864050 904070 874270 1441700 1437100 1126400 1297600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 899410 1445900 15173 1888000 902140 807650 840360 1459700 1442000 1139900 1341900 837510 1350900 83762 1878700 864050 904070 874270 1441700 1437100 1126400 1297600 2 2 1 2 2 2 2 2 2 2 2 71364000 0 71364000 7864 8 7335 41881;41882 50361 50361 8 1 HFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVK Unmodified 3819.8526 0.85263743 2908 Q9NQT4 EXOSC5 Exosome complex component RRP46 yes yes 0 0 0 1 By MS/MS By matching 7.5 0.5 1 1 1 1 74.354 74.394 4 0.0008041 25457 20211116_3435_TMUAki_TMT10x_P_F7 56.041 46.82 1314400 2081200 62962 2115200 1266000 2590100 1588100 1521100 1198700 1395400 1535800 1224300 1942200 166970 2162600 1225900 2585300 1582000 1596700 1248500 1368000 1471100 1 1 1 1 1 1 1 1 1 1 1 1314400 2081200 62962 2115200 1266000 2590100 1588100 1521100 1198700 1395400 1535800 1224300 1942200 166970 2162600 1225900 2585300 1582000 1596700 1248500 1368000 1471100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1604700000 930080000 674570000 7865 2908 7336 41883;41884 50362 50362 1 HFADLLPGFLQAVNDSCYQNDDSVLK Unmodified 2965.3916 0.39162191 84 O00410;O00410-2;O00410-3 IPO5 Importin-5 yes no 0 0 0 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 2 2 79.793 79.804 3 8.5188E-13 25738 20211116_3447_TMUAki_TMT10x_S_F8 118.22 95.567 3172300 5228900 6501.9 5343000 2828700 3420900 4347000 2005900 2010700 2637400 3465200 2953500 4879500 227390 5413900 2748500 3571700 4257600 2129800 2199400 2549800 3297700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3172300 5228900 6501.9 5343000 2828700 3420900 4347000 2005900 2010700 2637400 3465200 2953500 4879500 227390 5413900 2748500 3571700 4257600 2129800 2199400 2549800 3297700 2 2 1 2 2 2 2 2 2 2 2 2646400000 853160000 1793300000 7866 84 7337 41885;41886;41887;41888 50363;50364;50365 50365 3 HFAGAVCYETTQFVEK Unmodified 1885.8669 0.86688392 3180 Q9UM54-6;Q9UM54;Q9UM54-5;Q9UM54-4;Q9UM54-2;Q9UM54-1 MYO6 Unconventional myosin-VI yes no 0 0 0 0 By MS/MS 6 0 1 1 53.818 53.912 3 4.8386E-07 15046 20211116_3434_TMUAki_TMT10x_P_F6 103.21 82.55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7867 3180 7338 41889 50366 50366 1 HFCPNVPIILVGNK Unmodified 1606.8654 0.86536778 1314;549 P08134;P61586 RHOC;RHOA Rho-related GTP-binding protein RhoC;Transforming protein RhoA no no 0 0 0 0 By matching By MS/MS 3 0 2 1 1 62.262 61.908 3 0.053251 21957 20211116_3441_TMUAki_TMT10x_S_F3 36.938 10.209 4794600 10449000 20903 7568400 6274600 5900600 5955400 7961000 7734300 8073800 7558900 4464400 9739700 437710 7899500 6009700 6160300 6112600 7993600 7784200 7880600 7297200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4794600 10449000 20903 7568400 6274600 5900600 5955400 7961000 7734300 8073800 7558900 4464400 9739700 437710 7899500 6009700 6160300 6112600 7993600 7784200 7880600 7297200 1 1 1 1 1 1 1 1 1 1 1 2093500000 1423400000 670150000 7868 549;1314 7339 41890;41891 50367 50367 1 HFCPNVPIILVGNKK Unmodified 1734.9603 0.9603308 1314;549 P08134;P61586 RHOC;RHOA Rho-related GTP-binding protein RhoC;Transforming protein RhoA no no 0 0 0 1 By MS/MS By MS/MS 4.3 0.9 2 4 3 1 5 5 55.259 55.295 3;4 3.1804E-05 16498 20211116_3431_TMUAki_TMT10x_P_F4 97.551 86.907 139210000 211490000 1087600 242650000 210590000 226260000 151580000 146940000 133920000 127520000 172590000 129630000 197460000 13252000 245090000 200480000 229730000 156290000 152820000 138390000 125350000 165290000 15 15 9 15 15 15 15 15 15 15 15 86648000 126940000 980790 147260000 161420000 185910000 110290000 87614000 80178000 78045000 105240000 80684000 118530000 8994900 149370000 153540000 184800000 113610000 93754000 83774000 76617000 100740000 9 9 6 9 9 9 9 9 9 9 9 52564000 84547000 106830 95391000 49172000 40351000 41288000 59328000 53744000 49479000 67354000 48941000 78932000 4257200 95726000 46947000 44928000 42678000 59069000 54614000 48730000 64552000 6 6 3 6 6 6 6 6 6 6 6 23043000000 12105000000 10938000000 7869 549;1314 7340 41892;41893;41894;41895;41896;41897;41898;41899;41900;41901 50368;50369;50370;50371;50372;50373;50374;50375;50376;50377;50378;50379;50380;50381;50382 50372 15 HFDETVNR Unmodified 1016.4676 0.46755746 494 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 28.255 27.995 3 0.00029913 8321 20211116_3441_TMUAki_TMT10x_S_F3 133.68 109.53 403090 627240 473.61 456780 438440 635270 417900 361280 385390 347810 484560 375310 584650 33140 480700 419830 630010 423960 380750 397010 340240 464370 2 2 1 2 2 2 2 2 2 2 2 243820 372930 0 263740 250110 407280 243880 228650 247060 224990 309540 227010 347580 19087 278920 239580 402040 247800 241380 253420 219890 296670 1 1 0 1 1 1 1 1 1 1 1 159270 254310 473.61 193030 188330 227990 174020 132640 138330 122820 175020 148300 237070 14053 201780 180250 227960 176160 139370 143590 120360 167700 1 1 1 1 1 1 1 1 1 1 1 16342000 7458100 8884000 7870 494 7341 41902;41903 50383;50384 50384 2 HFDGEDYTCITFQPDLSK Unmodified 2171.947 0.94698474 1500 Q02880;Q02880-2 TOP2B DNA topoisomerase 2-beta yes no 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 64.173 64.185 3 1.1341E-08 20227 20211116_3431_TMUAki_TMT10x_P_F4 106.35 98.066 5431300 8766500 114670 9615300 6544600 5070400 5662400 4845100 4166000 4613200 6296700 5057900 8183300 572750 9681300 6260000 5440600 5743400 4930600 4379300 4515000 6008300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5431300 8766500 114670 9615300 6544600 5070400 5662400 4845100 4166000 4613200 6296700 5057900 8183300 572750 9681300 6260000 5440600 5743400 4930600 4379300 4515000 6008300 2 2 2 2 2 2 2 2 2 2 2 1079900000 0 1079900000 7871 1500 7342 41904;41905;41906;41907;41908;41909 50385;50386;50387;50388;50389;50390 50385 6 HFEALANR Unmodified 956.48281 0.48281359 1808 Q15436;Q15436-2 SEC23A Protein transport protein Sec23A yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 31.184 31.169 3 0.040649 6860 20211116_3431_TMUAki_TMT10x_P_F4 46.334 37.151 2436400 3411200 390090 3631300 2355600 3998300 2380500 2220900 2160900 2186900 2990000 2271500 3183900 564410 3694500 2283000 4010700 2406500 2346700 2237400 2137300 2858700 2 2 2 2 2 2 2 2 2 2 2 2436400 3411200 390090 3631300 2355600 3998300 2380500 2220900 2160900 2186900 2990000 2271500 3183900 564410 3694500 2283000 4010700 2406500 2346700 2237400 2137300 2858700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34843000 34843000 0 7872 1808 7343 41910;41911 50391 50391 1 HFEATDILVSK Unmodified 1258.6558 0.65575216 295 O60841 EIF5B Eukaryotic translation initiation factor 5B yes yes 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 52.489 52.643 3 3.2594E-05 15695 20211116_3433_TMUAki_TMT10x_P_F5 100.69 73.066 11187000 18273000 93319 20058000 16296000 17345000 12438000 17094000 16392000 15809000 16390000 10416000 17057000 1081600 20296000 15534000 17831000 12940000 17354000 16503000 15493000 15811000 4 4 3 4 4 4 4 4 4 4 4 4979800 7851400 8731.4 8523500 10074000 12110000 7013700 7206700 6836700 6591700 7286600 4636800 7328700 492340 8701500 9582700 12006000 7268800 7556300 6978900 6463100 7015200 2 2 2 2 2 2 2 2 2 2 2 6206700 10421000 84587 11534000 6222400 5234300 5424200 9887600 9555500 9217200 9103100 5779700 9728500 589270 11594000 5951100 5825600 5671600 9798100 9524200 9029600 8795400 2 2 1 2 2 2 2 2 2 2 2 1625700000 959480000 666220000 7873 295 7344 41912;41913;41914;41915;41916 50392;50393;50394;50395 50392 4 HFEELETIMDR Oxidation (M) 1434.6449 0.64492948 2379;2263 Q8TAQ2;Q8TAQ2-2;Q8TAQ2-3;Q92922 SMARCC2;SMARCC1 SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1 no no 0 0 1 0 By MS/MS By MS/MS 2 1 2 2 2 2 42.513 42.422 3 0.0010507 12627 20211116_3430_TMUAki_TMT10x_P_F3 78.043 66.784 1814700 2629100 4477.5 3250500 2993800 3075800 2296400 2482000 2432600 2018500 2598500 1689500 2455600 153820 3269600 2852200 3130900 2370000 2539600 2474700 1990400 2501600 3 3 2 3 3 3 3 3 3 3 3 1245500 1670000 3831.9 2205300 2516300 2555400 1780000 1666100 1568800 1315600 1724200 1159600 1560300 107320 2217200 2393400 2561700 1837500 1728400 1610800 1299300 1658400 2 2 1 2 2 2 2 2 2 2 2 569170 959130 645.57 1045200 477450 520460 516390 815860 863810 702830 874350 529960 895290 46505 1052300 458820 569210 532510 811220 863950 691080 843130 1 1 1 1 1 1 1 1 1 1 1 191010000 93481000 97530000 7874 2263;2379 7345 41917;41918;41919;41920 50396;50397;50398;50399 50397 2643;2713 4 HFEELETIMDRER Oxidation (M) 1719.7886 0.7886336 2263 Q8TAQ2;Q8TAQ2-2;Q8TAQ2-3 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 0 0 1 1 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 38.477 38.304 4 0.047525 12302 20211116_3441_TMUAki_TMT10x_S_F3 42.469 29.513 1249600 2127000 37769 2156300 3052500 2604700 1834800 2088400 2138300 1661900 2105200 1163800 1984800 164050 2204500 2898600 2614200 1934200 2136600 2160900 1640700 2031800 2 2 2 2 2 2 2 2 2 2 2 932160 1597800 13581 1650800 2684000 2281000 1507900 1535700 1624400 1288000 1588300 868040 1491100 114480 1689800 2544800 2268100 1594600 1591600 1646200 1268200 1533300 1 1 1 1 1 1 1 1 1 1 1 317460 529220 24188 505520 368580 323630 326940 552660 513820 373910 516910 295770 493730 49578 514670 353830 346060 339590 545000 514650 372540 498550 1 1 1 1 1 1 1 1 1 1 1 158790000 121430000 37368000 7875 2263 7346 41921;41922;41923 50400 50400 2643 1 HFEGLIAR Unmodified 941.5083 0.50830006 2963 Q9NV70;Q9NV70-2 EXOC1 Exocyst complex component 1 yes no 0 0 0 0 By MS/MS 6 0 1 1 35.69 35.672 3 0.0077826 7623 20211116_3434_TMUAki_TMT10x_P_F6 71.379 54.283 166990 194370 9846.9 268200 198710 195410 165890 94146 93023 102400 158020 155560 181640 23466 267300 190300 201290 167730 101080 100130 99667 150420 1 1 1 1 1 1 1 1 1 1 1 166990 194370 9846.9 268200 198710 195410 165890 94146 93023 102400 158020 155560 181640 23466 267300 190300 201290 167730 101080 100130 99667 150420 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8913900 8913900 0 7876 2963 7347 41924 50401 50401 1 HFELGGDKK Unmodified 1029.5243 0.52434406 1450 Q969Q0;P83881 RPL36AL;RPL36A 60S ribosomal protein L36a-like;60S ribosomal protein L36a yes no 0 0 0 1 By matching By MS/MS 5 0 2 1 1 34.032 34.096 4 0.0022993 7086 20211116_3444_TMUAki_TMT10x_S_F5 77.662 55.021 394950 632140 9814 650230 417390 342040 396910 336780 369430 358070 477300 367810 589920 42205 657450 400290 367340 402820 343320 380860 348830 457090 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 394950 632140 9814 650230 417390 342040 396910 336780 369430 358070 477300 367810 589920 42205 657450 400290 367340 402820 343320 380860 348830 457090 1 1 1 1 1 1 1 1 1 1 1 80579000 58074000 22505000 7877 1450 7348 41925;41926 50402 50402 1 HFEQAIER Unmodified 1028.5039 0.50394297 3305 Q9Y4W6 AFG3L2 AFG3-like protein 2 yes yes 0 0 0 0 By MS/MS 3 0 1 1 30.927 30.674 3 0.0047182 9320 20211116_3441_TMUAki_TMT10x_S_F3 76.1 62.407 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7878 3305 7349 41927 50403 50403 1 HFFLYGEFPGDER Unmodified 1612.731 0.73104237 726 P18887 XRCC1 DNA repair protein XRCC1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.75 0.829 2 1 1 2 2 60.564 60.603 3 0.00020101 17883 20211116_3444_TMUAki_TMT10x_S_F5 82.202 71.568 2001600 3439700 25736 3150600 2986800 4519600 2650400 2721200 2151500 2478700 2654300 1863900 3208600 203730 3255100 2857000 4479400 2690600 2850200 2228400 2430800 2545000 1 1 1 1 1 1 1 1 1 1 1 2001600 3439700 25736 3150600 2986800 4519600 2650400 2721200 2151500 2478700 2654300 1863900 3208600 203730 3255100 2857000 4479400 2690600 2850200 2228400 2430800 2545000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 378210000 378210000 0 7879 726 7350 41928;41929;41930;41931 50404;50405;50406;50407 50407 4 HFGAEYR Unmodified 878.4035 0.40350064 493 P04818;P04818-2 TYMS Thymidylate synthase yes no 0 0 0 0 By MS/MS 3.67 1.25 1 1 1 3 28.577 28.49 3 0.0011156 5717 20211116_3431_TMUAki_TMT10x_P_F4 120.65 88.71 356060 574990 1778.5 556030 503940 640190 529190 354110 357310 386440 411890 331520 536450 31070 569840 483810 640560 530140 375440 372960 376090 395640 3 3 2 3 3 3 3 3 3 3 3 356060 574990 1778.5 556030 503940 640190 529190 354110 357310 386440 411890 331520 536450 31070 569840 483810 640560 530140 375440 372960 376090 395640 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32651000 32651000 0 7880 493 7351 41932;41933;41934 50408;50409;50410 50409 3 HFGAEYRDMESDYSGQGVDQLQR Oxidation (M) 2703.162 0.16195632 493 P04818 TYMS Thymidylate synthase yes yes 0 0 1 1 By MS/MS By MS/MS 3.8 1.17 1 1 1 2 3 2 38.898 38.829 4 5.9752E-28 9877 20211116_3431_TMUAki_TMT10x_P_F4 171.83 167.28 1388300 2591800 1211.8 3104800 2213300 2254100 1521700 2065900 2415500 1691400 2190800 1292500 2420400 100840 3118500 2103200 2344500 1607300 2098800 2410200 1667400 2120300 3 3 1 3 3 3 3 3 3 3 3 544770 1097300 0 1139000 1530500 1659600 958750 797490 1051100 605830 800280 507210 1024000 56055 1166800 1453000 1639200 1005300 848600 1056400 599580 779770 1 1 0 1 1 1 1 1 1 1 1 843550 1494600 1211.8 1965800 682810 594500 562940 1268400 1364300 1085600 1390500 785240 1396400 44788 1951700 650210 705370 602090 1250200 1353800 1067800 1340600 2 2 1 2 2 2 2 2 2 2 2 616270000 438230000 178040000 7881 493 7352 41935;41936;41937;41938;41939 50411;50412;50413 50411 395 3 HFGLQILEHVVK Unmodified 1418.8034 0.80341945 2852 Q9HAV4 XPO5 Exportin-5 yes yes 0 0 0 0 By MS/MS 1 0 1 1 59.818 59.818 4 0.00020603 18062 20211116_3428_TMUAki_TMT10x_P_F1 87.184 70.552 1395300 2380900 23334 2514400 1960700 3180400 1996800 1527500 1414100 1501000 1856700 1299300 2222100 145340 2565600 1882300 3161700 2005500 1635600 1479800 1467000 1777400 1 1 1 1 1 1 1 1 1 1 1 1395300 2380900 23334 2514400 1960700 3180400 1996800 1527500 1414100 1501000 1856700 1299300 2222100 145340 2565600 1882300 3161700 2005500 1635600 1479800 1467000 1777400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 502140000 502140000 0 7882 2852 7353 41940 50414 50414 1 HFHPLFEYFDYESRK Unmodified 2013.9373 0.93734675 2541 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 0 0 0 1 By MS/MS 8 0 2 2 55.841 55.973 4;5 1.6704E-05 16573 20211116_3436_TMUAki_TMT10x_P_F8 98.592 87.958 5605500 9383100 132570 8605300 8516100 13514000 8171000 7876700 7803000 7544500 7474500 5220300 8752500 629050 8907100 8165000 13338000 8294900 8283100 7942700 7382100 7220600 2 2 2 2 2 2 2 2 2 2 2 5605500 9383100 132570 8605300 8516100 13514000 8171000 7876700 7803000 7544500 7474500 5220300 8752500 629050 8907100 8165000 13338000 8294900 8283100 7942700 7382100 7220600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 449690000 449690000 0 7883 2541 7354 41941;41942 50415;50416 50416 2 HFIDVGAGVIDEDYR Unmodified 1704.8107 0.81074925 908 P33316;P33316-2 DUT Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 3 1.41 2 2 2 2 2 5 5 57.694 57.592 3 2.3855E-19 17389 20211116_3440_TMUAki_TMT10x_S_F2 162.37 145.63 41043000 68312000 936580 69024000 54615000 72392000 52452000 57004000 53542000 51820000 57217000 38222000 63745000 4074800 70416000 52369000 73195000 53351000 58579000 54552000 50824000 55082000 14 14 12 14 14 14 14 14 14 14 14 22203000 35455000 299820 34900000 34001000 51909000 32507000 31824000 29564000 27519000 30500000 20676000 33082000 1894600 35897000 32581000 51381000 32960000 33241000 30238000 27053000 29393000 7 7 5 7 7 7 7 7 7 7 7 18840000 32856000 636760 34124000 20614000 20483000 19946000 25180000 23978000 24302000 26718000 17546000 30663000 2180200 34519000 19787000 21814000 20391000 25338000 24314000 23771000 25689000 7 7 7 7 7 7 7 7 7 7 7 10249000000 5543400000 4705800000 7884 908 7355 41943;41944;41945;41946;41947;41948;41949;41950;41951;41952 50417;50418;50419;50420;50421;50422;50423;50424;50425;50426;50427;50428;50429;50430 50427 14 HFIEQGINVCLCQSYAK Unmodified 2065.9714 0.97136577 471 P00505;P00505-2 GOT2 Aspartate aminotransferase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 6.6 2.8 1 4 3 2 57.126 57.171 3;4 1.5559E-21 16475 20211116_3447_TMUAki_TMT10x_S_F8 162.76 148.49 33182000 54330000 377740 61708000 47792000 62421000 39394000 31161000 25825000 30726000 39146000 30897000 50723000 3020500 62442000 45618000 62844000 39978000 33247000 27339000 30027000 37351000 10 10 6 10 10 10 10 10 10 10 10 28786000 46044000 335650 53196000 41806000 59191000 35734000 27298000 22372000 26628000 33623000 26803000 42991000 2620100 53853000 39936000 59213000 36150000 29344000 23744000 26034000 32086000 8 8 5 8 8 8 8 8 8 8 8 4396100 8285800 42087 8512400 5986200 3229800 3660600 3862800 3452900 4097700 5523300 4093300 7732400 400350 8589000 5682300 3630400 3828300 3902500 3595300 3992300 5264100 2 2 1 2 2 2 2 2 2 2 2 6306300000 4291200000 2015000000 7885 471 7356 41953;41954;41955;41956;41957 50431;50432;50433;50434;50435;50436;50437;50438;50439;50440 50439 10 HFILDECDK Unmodified 1175.5281 0.5281088 1665 Q13838;Q13838-2 DDX39B Spliceosome RNA helicase DDX39B yes no 0 0 0 0 By MS/MS By MS/MS 3.89 1.2 1 3 2 2 1 5 4 43.269 43.264 2;3 6.8091E-05 11943 20211116_3433_TMUAki_TMT10x_P_F5 135.79 118.42 20495000 32409000 318110 43626000 33769000 28914000 21535000 23987000 25739000 21812000 29853000 19085000 30283000 2133800 43493000 32088000 30252000 22614000 24572000 26147000 21392000 28670000 11 11 8 11 11 11 11 11 11 11 11 7008400 10218000 90477 14006000 20997000 16942000 9645200 8516600 8949500 7349000 9832000 6526100 9548900 839820 14064000 19851000 16889000 10356000 9049400 9166300 7225500 9457300 4 4 3 4 4 4 4 4 4 4 4 13486000 22191000 227630 29620000 12772000 11972000 11890000 15471000 16789000 14463000 20021000 12559000 20734000 1294000 29429000 12237000 13363000 12258000 15523000 16980000 14167000 19213000 7 7 5 7 7 7 7 7 7 7 7 2963500000 2032300000 931190000 7886 1665 7357 41958;41959;41960;41961;41962;41963;41964;41965;41966 50441;50442;50443;50444;50445;50446;50447;50448;50449;50450;50451;50452;50453 50445 13 HFIMQVVCEATQCPDTR Unmodified 2090.9336 0.93360005 1739 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 0 By MS/MS By MS/MS 5.43 2.87 2 1 2 2 3 4 61.345 61.504 3 7.6526E-22 18201 20211116_3447_TMUAki_TMT10x_S_F8 171.46 161.12 40451000 69023000 461920 63157000 50016000 58624000 50893000 44468000 38283000 41686000 51114000 37663000 64384000 3492500 64777000 47980000 59684000 51187000 45844000 39954000 40827000 48910000 13 13 7 13 13 13 13 13 13 13 13 20756000 33995000 220700 31601000 24160000 37619000 27318000 21852000 19077000 20083000 25317000 19326000 31712000 1792700 32497000 23247000 37598000 27290000 22960000 19990000 19687000 24229000 6 6 3 6 6 6 6 6 6 6 6 19694000 35028000 241220 31556000 25856000 21005000 23575000 22617000 19206000 21603000 25797000 18337000 32672000 1699900 32280000 24733000 22085000 23897000 22884000 19964000 21140000 24681000 7 7 4 7 7 7 7 7 7 7 7 8811600000 4602500000 4209100000 7887 1739 7358 41967;41968;41969;41970;41971;41972;41973 50454;50455;50456;50457;50458;50459;50460;50461;50462;50463;50464;50465;50466 50463 13 HFIMQVVCEATQCPDTR Oxidation (M) 2106.9285 0.92851468 1739 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 1 0 By MS/MS By MS/MS 6.5 1.12 2 2 2 2 5 3 54.714 54.961 3 1.5832E-15 17188 20211116_3435_TMUAki_TMT10x_P_F7 148.03 140.03 18964000 33679000 88994 30071000 27402000 39590000 23502000 34571000 33062000 28948000 28877000 17657000 31412000 1654500 31074000 26174000 39632000 24339000 35235000 33068000 28504000 27986000 12 12 8 12 12 12 12 12 12 12 12 11685000 19831000 24378 18186000 17890000 29839000 15486000 20583000 19832000 17385000 17483000 10879000 18498000 959580 18843000 17087000 29472000 15968000 21299000 19902000 17111000 16938000 7 7 3 7 7 7 7 7 7 7 7 7278500 13848000 64616 11884000 9512200 9750600 8016500 13988000 13230000 11563000 11393000 6777500 12914000 694940 12231000 9087000 10160000 8371100 13936000 13166000 11393000 11048000 5 5 5 5 5 5 5 5 5 5 5 6566800000 3540800000 3026000000 7888 1739 7358 41974;41975;41976;41977;41978;41979;41980;41981 50467;50468;50469;50470;50471;50472;50473;50474;50475;50476;50477;50478;50479;50480 50472 2341 14 HFLLEEDKPEEPTAHAFVSTLTR Unmodified 2666.334 0.33403068 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 1 By MS/MS By MS/MS 6.07 1.28 2 3 3 4 2 7 7 56.415 56.661 4;5 1.2672E-27 18492 20211116_3446_TMUAki_TMT10x_S_F7 165.13 155.28 141260000 256390000 1832000 240760000 194110000 219870000 153340000 184560000 156080000 151910000 182370000 131540000 239180000 13352000 246410000 185180000 224490000 157750000 188450000 159600000 149710000 175110000 27 27 21 27 27 27 27 27 27 27 27 75536000 134150000 961410 128130000 93913000 155870000 89882000 94866000 82268000 78046000 92083000 70337000 125150000 7127800 131550000 89986000 155710000 91146000 99029000 84375000 76917000 88525000 13 13 10 13 13 13 13 13 13 13 13 65723000 122240000 870580 112630000 100190000 64006000 63453000 89692000 73810000 73860000 90289000 61200000 114030000 6223800 114850000 95194000 68781000 66605000 89423000 75220000 72788000 86588000 14 14 11 14 14 14 14 14 14 14 14 32068000000 16985000000 15083000000 7889 1092 7359 41982;41983;41984;41985;41986;41987;41988;41989;41990;41991;41992;41993;41994;41995 50481;50482;50483;50484;50485;50486;50487;50488;50489;50490;50491;50492;50493;50494;50495;50496;50497;50498;50499;50500;50501;50502;50503;50504;50505;50506;50507 50506 27 HFLPEMLSK Oxidation (M) 1116.5638 0.56376603 1426 P78344;P78344-2 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 0 0 1 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 44.365 44.88 3 0.0031169 13745 20211116_3446_TMUAki_TMT10x_S_F7 72.643 64.338 2627500 3855300 36246 4305600 4163600 4719500 2968100 4484900 4356800 3752500 4146000 2446500 3599100 244970 4366800 3962600 4777100 3116100 4549800 4364000 3695100 4006000 2 2 1 2 2 2 2 2 2 2 2 1580400 2238400 36246 2413100 3327000 3868100 2136400 2670100 2565500 2118900 2361000 1471700 2089300 189270 2471200 3162400 3823900 2242500 2758800 2584000 2092200 2283900 1 1 1 1 1 1 1 1 1 1 1 1047100 1616900 0 1892500 836570 851460 831710 1814800 1791200 1633600 1785000 974770 1509800 55702 1895600 800190 953280 873600 1791100 1780100 1602900 1722100 1 1 0 1 1 1 1 1 1 1 1 244420000 149720000 94698000 7890 1426 7360 41996;41997;41998;41999 50508;50509;50510;50511 50511 1917 4 HFLPEMLSK Unmodified 1100.5689 0.56885141 1426 P78344;P78344-2 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 0 0 0 0 By MS/MS 8 0 1 1 54.199 54.131 3 0.0014866 15296 20211116_3447_TMUAki_TMT10x_S_F8 76.465 49.951 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7891 1426 7360 42000 50512 50512 1 HFLVPASR Unmodified 925.51339 0.51338544 3 P0DPI3;A0A0U1RR11;A0A0U1RRI6 yes no 0 0 0 0 By MS/MS By MS/MS 1.2 0.4 4 1 3 2 32.806 32.772 2;3 0.00062801 8986 20211116_3439_TMUAki_TMT10x_S_F1 118.74 0 1102500 1692000 15498 1814200 1672900 1552500 1186900 1288400 1392800 1147600 1503000 1026600 1579300 112770 1838200 1592700 1591800 1235700 1319100 1411900 1126600 1446500 4 4 3 4 4 4 4 4 4 4 4 516100 764690 13341 850190 1078000 1038800 651400 571620 639220 555060 679710 480640 713860 63091 864110 1023700 1036200 682670 604270 652270 542780 654440 2 2 2 2 2 2 2 2 2 2 2 586390 927330 2157.4 963960 594880 513710 535460 716810 753620 592530 823280 546000 865430 49679 974080 568960 555670 553000 714830 759610 583820 792030 2 2 1 2 2 2 2 2 2 2 2 249290000 159950000 89340000 7892 3 7361 42001;42002;42003;42004;42005 50513;50514;50515;50516 50515 4 HFNALGGWGELQNSVK Unmodified 1755.8693 0.86926718 589 P09960;P09960-2;P09960-4;P09960-3 LTA4H Leukotriene A-4 hydrolase yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 60.245 60.307 3 1.7318E-05 18308 20211116_3436_TMUAki_TMT10x_P_F8 93.51 73.932 10692000 17022000 93588 16136000 13535000 20177000 14135000 10755000 10386000 10549000 14429000 9955500 15880000 984720 16584000 12997000 20094000 14191000 11404000 10874000 10311000 13794000 3 3 1 3 3 3 3 3 3 3 3 10692000 17022000 93588 16136000 13535000 20177000 14135000 10755000 10386000 10549000 14429000 9955500 15880000 984720 16584000 12997000 20094000 14191000 11404000 10874000 10311000 13794000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1417300000 1061300000 356040000 7893 589 7362 42006;42007;42008;42009 50517;50518;50519;50520 50519 4 HFPEFPATR Unmodified 1100.5403 0.54032847 2140 Q8IVM0;Q8IVM0-2 CCDC50 Coiled-coil domain-containing protein 50 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 39.209 39.299 3 0.00035817 9249 20211116_3434_TMUAki_TMT10x_P_F6 106.88 83.527 2503600 3779900 0 3784100 4136300 3793600 2944400 2101400 2456300 1961800 2841500 2330800 3527000 189380 3860200 3933400 3826000 3033900 2217800 2533900 1921700 2729200 2 2 0 2 2 2 2 2 2 2 2 1815500 2729800 0 2724700 3439800 3305400 2120800 1587000 1869200 1446300 2083900 1690300 2547200 150540 2788700 3263600 3292900 2212400 1696100 1920200 1418400 2003600 1 1 0 1 1 1 1 1 1 1 1 688090 1050000 0 1059400 696490 488120 823600 514430 587090 515440 757650 640530 979840 38842 1071500 669830 533090 821440 521740 613670 503360 725600 1 1 0 1 1 1 1 1 1 1 1 118990000 84571000 34424000 7894 2140 7363 42010;42011 50521;50522 50521 2 HFPLDLR Unmodified 896.48684 0.48683634 1481 Q01433;Q01433-2 AMPD2 AMP deaminase 2 yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 43.34 43.697 3 0.023643 11237 20211116_3445_TMUAki_TMT10x_S_F6 62.659 19.658 1738700 2790100 0 3099000 1501000 1094000 1263300 2007500 2014800 1895000 2321900 1618900 2604600 0 3109700 1433200 1258700 1317100 1991600 2027700 1855400 2230400 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1738700 2790100 0 3099000 1501000 1094000 1263300 2007500 2014800 1895000 2321900 1618900 2604600 0 3109700 1433200 1258700 1317100 1991600 2027700 1855400 2230400 2 2 0 2 2 2 2 2 2 2 2 80432000 0 80432000 7895 1481 7364 42012;42013 50523;50524 50523 2 HFPNIDREK Unmodified 1154.5833 0.58325592 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 32.931 32.917 4 0.00067798 7846 20211116_3433_TMUAki_TMT10x_P_F5 103.7 84.955 476380 723670 7994.3 853860 1388400 986330 637610 608050 543620 490740 666860 443620 675740 59720 863870 1312900 988140 683110 633800 561530 484110 639480 1 1 1 1 1 1 1 1 1 1 1 476380 723670 7994.3 853860 1388400 986330 637610 608050 543620 490740 666860 443620 675740 59720 863870 1312900 988140 683110 633800 561530 484110 639480 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 48471000 48471000 0 7896 1695 7365 42014;42015 50525 50525 1 HFSGLEEAVYR Unmodified 1306.6306 0.63060004 1146 P50990;P50990-2 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 By MS/MS By MS/MS 6.14 1.64 1 2 2 2 3 4 7 7 41.688 41.907 2;3 9.3875E-19 12171 20211116_3435_TMUAki_TMT10x_P_F7 227.99 207.43 10897000 17958000 97255 20202000 22215000 20839000 13135000 14481000 14857000 12254000 15749000 10147000 16765000 1019900 20461000 21075000 21048000 13851000 14978000 15071000 12059000 15165000 15 15 9 15 15 15 15 15 15 15 15 7609200 12158000 50326 14177000 19005000 18202000 10321000 10279000 10442000 8610000 11035000 7084800 11352000 781550 14380000 18004000 18116000 10926000 10801000 10639000 8477700 10627000 9 9 4 9 9 9 9 9 9 9 9 3288200 5800300 46929 6025600 3210500 2637700 2814300 4202200 4414900 3643700 4714100 3062000 5413200 238320 6080500 3071200 2931200 2924900 4176800 4432000 3581700 4538300 6 6 5 6 6 6 6 6 6 6 6 2206900000 1356300000 850560000 7897 1146 7366 42016;42017;42018;42019;42020;42021;42022;42023;42024;42025;42026;42027;42028;42029 50526;50527;50528;50529;50530;50531;50532;50533;50534;50535;50536;50537;50538;50539;50540;50541;50542;50543 50534 18 HFSVEGQLEFR Unmodified 1347.6571 0.65714914 553;544 P07900;P07900-2;Q14568;Q58FG1;P08238;Q58FF7 HSP90AA1;HSP90AA2P;HSP90AA4P;HSP90AB1;HSP90AB3P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-alpha A4;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 no no 0 0 0 0 By MS/MS By MS/MS 4.71 1.83 1 3 3 6 5 5 3 2 15 13 44.11 44.192 2;3 2.392E-16 14298 20211116_3435_TMUAki_TMT10x_P_F7 209.8 175.93 53925000 84679000 522040 93791000 75326000 84101000 60627000 73017000 68665000 69312000 74163000 50209000 79049000 4517200 94894000 71854000 86025000 62514000 74687000 69698000 67847000 71373000 35 35 19 35 35 35 35 35 35 35 35 25863000 37765000 148800 43720000 43147000 55114000 30592000 31444000 31895000 31178000 32392000 24080000 35261000 2099400 44351000 41051000 54912000 31728000 33157000 32408000 30461000 31232000 16 16 7 16 16 16 16 16 16 16 16 28063000 46914000 373230 50072000 32179000 28987000 30035000 41573000 36770000 38134000 41772000 26129000 43787000 2417800 50543000 30803000 31113000 30787000 41531000 37290000 37386000 40141000 19 19 12 19 19 19 19 19 19 19 19 15068000000 8476000000 6592200000 7898 544;553 7367 42030;42031;42032;42033;42034;42035;42036;42037;42038;42039;42040;42041;42042;42043;42044;42045;42046;42047;42048;42049;42050;42051;42052;42053;42054;42055;42056;42057 50544;50545;50546;50547;50548;50549;50550;50551;50552;50553;50554;50555;50556;50557;50558;50559;50560;50561;50562;50563;50564;50565;50566;50567;50568;50569;50570;50571;50572;50573;50574;50575;50576;50577;50578;50579;50580;50581 50559 38 HFTIDDFEIGRPLGK Unmodified 1743.8944 0.8944193 2473 Q96GD4;Q96GD4-4;Q96GD4-2;Q96GD4-5;Q96GD4-3 AURKB Aurora kinase B yes no 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 60.94 61.543 4 3.7043E-14 20532 20211116_3446_TMUAki_TMT10x_S_F7 148.52 130.16 8936600 16192000 226860 15964000 9831000 12520000 9185800 10347000 9774300 11013000 11919000 8321900 15108000 886670 16251000 9418800 12919000 9369500 10650000 9994000 10728000 11432000 2 2 1 2 2 2 2 2 2 2 2 3518800 5844000 0 6003700 4307200 6936600 4085200 3619800 3493600 4276800 4217900 3275700 5453700 224590 6127400 4119300 6934400 4137100 3867400 3605700 4149800 4046400 1 1 0 1 1 1 1 1 1 1 1 5417800 10348000 226860 9960600 5523700 5583800 5100600 6727100 6280700 6736200 7701200 5046200 9654700 662080 10123000 5299500 5984100 5232400 6782200 6388300 6578500 7385100 1 1 1 1 1 1 1 1 1 1 1 1686100000 825970000 860100000 7899 2473 7368 42058;42059 50582;50583 50583 2 HFTILDAPGHK Unmodified 1234.6459 0.64585618 681 P15170-3;P15170-2;P15170;Q8IYD1 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 38.825 39.047 4 1.1296E-06 10927 20211116_3435_TMUAki_TMT10x_P_F7 127.42 105.92 1613300 2340300 171380 2934600 3301000 3981200 2004400 2270300 2189400 2067900 2302200 1503400 2186000 317110 2967400 3142900 3952800 2106700 2388600 2223200 2027900 2217300 4 4 4 4 4 4 4 4 4 4 4 1613300 2340300 171380 2934600 3301000 3981200 2004400 2270300 2189400 2067900 2302200 1503400 2186000 317110 2967400 3142900 3952800 2106700 2388600 2223200 2027900 2217300 4 4 4 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 158680000 158680000 0 7900 681 7369 42060;42061 50584;50585;50586;50587 50587 4 HFVALSTNTTK Unmodified 1217.6404 0.64043645 522 P06744;P06744-2 GPI Glucose-6-phosphate isomerase yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 36.937 36.881 3 9.4334E-15 8857 20211116_3428_TMUAki_TMT10x_P_F1 185.96 168.63 7466600 11865000 81468 13150000 9258000 8009100 7194200 6498700 7141400 6399700 8904300 6952200 11076000 431840 13247000 8826200 8442300 7403700 6680700 7330000 6254300 8535000 6 6 2 6 6 6 6 6 6 6 6 2832700 4203300 79667 5102000 5012700 4243500 3060600 2403000 2570600 2173300 3493900 2638100 3925500 336160 5128600 4762000 4334600 3191400 2529200 2669300 2132000 3341900 2 2 1 2 2 2 2 2 2 2 2 4633900 7661500 1800.6 8047900 4245300 3765600 4133600 4095700 4570800 4226400 5410300 4314200 7150500 95681 8118800 4064200 4107700 4212300 4151500 4660700 4122400 5193200 4 4 1 4 4 4 4 4 4 4 4 717840000 374850000 342990000 7901 522 7370 42062;42063;42064;42065 50588;50589;50590;50591;50592;50593 50588 6 HFVGMLPEK Oxidation (M) 1072.5376 0.53755128 1282 P60981;P60981-2 DSTN Destrin yes no 0 0 1 0 By MS/MS By MS/MS 5.67 0.943 1 1 3 1 3 3 38.981 39.138 3 0.0015141 10840 20211116_3435_TMUAki_TMT10x_P_F7 80.165 63.592 2536500 4019600 14670 4552200 6194300 5930900 3585900 3834100 3528300 3225400 3910800 2361600 3752700 244130 4627000 5872700 5909900 3771900 3985900 3605500 3175100 3760800 5 5 2 5 5 5 5 5 5 5 5 2140300 3333400 13249 3839200 5787900 5604900 3215800 3245900 3017300 2750300 3304300 1992600 3112300 209810 3907300 5483800 5548000 3390300 3404500 3088400 2706500 3178600 4 4 1 4 4 4 4 4 4 4 4 396280 686210 1421.2 713040 406400 325960 370060 588190 511010 475020 606520 368990 640410 34321 719730 388850 361830 381640 581410 517090 468600 582130 1 1 1 1 1 1 1 1 1 1 1 659050000 548420000 110620000 7902 1282 7371 42066;42067;42068;42069;42070;42071 50594;50595;50596;50597;50598 50594 1738 5 HFVGMLPEK Unmodified 1056.5426 0.54263666 1282 P60981;P60981-2 DSTN Destrin yes no 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 45.872 46.207 3 0.00034325 13831 20211116_3435_TMUAki_TMT10x_P_F7 85.67 65.15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7903 1282 7371 42072;42073 50599;50600 50599 2 HFVLDECDK Unmodified 1161.5125 0.51245874 63 O00148;O00148-2;O00148-3 DDX39A ATP-dependent RNA helicase DDX39A yes no 0 0 0 0 By MS/MS By MS/MS 3 0.756 2 3 2 4 3 39.306 39.275 3 0.00012131 11107 20211116_3430_TMUAki_TMT10x_P_F3 128.38 117.83 4219000 6745700 22612 7817100 7200700 5483900 4758900 4603400 4559700 4126500 5903400 3928300 6298500 394970 7864200 6843200 5710800 4948700 4710500 4695100 4049800 5653200 8 8 5 8 8 8 8 8 8 8 8 1720100 2793300 4775.1 2986200 4832600 3558100 2180700 1874000 1951500 1728400 2372400 1601600 2607200 181330 3041300 4566800 3551700 2343600 1986000 2010300 1694100 2275600 5 5 3 5 5 5 5 5 5 5 5 2498900 3952400 17837 4830900 2368100 1925800 2578200 2729400 2608200 2398000 3531000 2326800 3691300 213650 4822800 2276400 2159100 2605100 2724600 2684900 2355700 3377600 3 3 2 3 3 3 3 3 3 3 3 585860000 367970000 217890000 7904 63 7372 42074;42075;42076;42077;42078;42079;42080 50601;50602;50603;50604;50605;50606;50607;50608 50604 8 HGAEVIDTPVFELK Unmodified 1553.809 0.80895834 637 P12081;P12081-4 HARS Histidine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 4.29 1.03 2 2 2 1 4 3 59.302 59.258 3 4.5247E-14 18145 20211116_3431_TMUAki_TMT10x_P_F4 148.68 122.56 64023000 107300000 644500 106520000 122240000 142850000 76937000 93088000 82918000 81928000 91322000 59615000 100120000 6493900 109270000 116090000 142170000 80595000 96823000 84391000 80475000 87835000 10 10 7 10 10 10 10 10 10 10 10 43996000 72390000 416050 70577000 100190000 123970000 57916000 66405000 58535000 56949000 63236000 40966000 67541000 4632200 72927000 95012000 121700000 60976000 70138000 59689000 56009000 60856000 6 6 4 6 6 6 6 6 6 6 6 20028000 34909000 228460 35946000 22054000 18882000 19021000 26683000 24383000 24979000 28086000 18649000 32577000 1861600 36343000 21081000 20464000 19619000 26685000 24702000 24466000 26979000 4 4 3 4 4 4 4 4 4 4 4 4157800000 2556800000 1601000000 7905 637 7373 42081;42082;42083;42084;42085;42086;42087 50609;50610;50611;50612;50613;50614;50615;50616;50617;50618 50610 10 HGDEIITSTTSNYETQTFSSK Unmodified 2345.0659 0.065913898 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 0.745 1 2 3 3 3 48.872 49.035 3 6.7008E-54 14264 20211116_3433_TMUAki_TMT10x_P_F5 206.21 186.89 10804000 21026000 203670 26111000 14965000 19372000 10666000 16174000 17557000 15227000 16985000 10061000 19638000 1124100 26178000 14252000 20079000 11257000 16578000 17539000 14910000 16403000 6 6 5 6 6 6 6 6 6 6 6 4678900 8239800 52813 10269000 10984000 15081000 8047300 6819100 7618000 6403700 6672000 4356800 7696200 505760 10405000 10460000 14881000 8302900 7337700 7735300 6271300 6465500 3 3 2 3 3 3 3 3 3 3 3 6125200 12786000 150860 15843000 3981800 4291400 2618500 9354800 9938900 8823100 10313000 5704300 11942000 618390 15773000 3792800 5198100 2954000 9239800 9804000 8639000 9937400 3 3 3 3 3 3 3 3 3 3 3 2164400000 1575900000 588540000 7906 1997 7374 42088;42089;42090;42091;42092;42093 50619;50620;50621;50622;50623;50624;50625;50626;50627 50622 9 HGDGTTLDIMLK Oxidation (M) 1315.6442 0.6442012 1246 P55786;P55786-2 NPEPPS Puromycin-sensitive aminopeptidase yes no 0 0 1 0 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 44.967 44.903 3 3.1488E-05 12722 20211116_3442_TMUAki_TMT10x_S_F4 99.752 79.423 4722300 8897300 21827 7924200 5375700 4951300 4987000 8736600 8998600 7267600 7466400 4397100 8298500 415470 8108300 5145600 5312500 5203000 8647800 8924700 7158500 7250000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4722300 8897300 21827 7924200 5375700 4951300 4987000 8736600 8998600 7267600 7466400 4397100 8298500 415470 8108300 5145600 5312500 5203000 8647800 8924700 7158500 7250000 2 2 1 2 2 2 2 2 2 2 2 323280000 0 323280000 7907 1246 7375 42094;42095;42096 50628;50629;50630 50630 1691 3 HGDLPDIQIK Unmodified 1134.6033 0.60332266 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 45.786 45.926 3 3.6536E-05 12716 20211116_3431_TMUAki_TMT10x_P_F4 123.6 96.481 6208000 9783900 263390 12004000 12406000 11841000 7617500 10105000 10260000 8142800 10233000 5782200 9137700 846970 12086000 11791000 12034000 8059000 10303000 10322000 8033500 9872300 4 4 4 4 4 4 4 4 4 4 4 3185900 5193500 179840 6147200 9841200 9432400 4966100 5926900 5891300 4851600 5686900 2967800 4849600 524950 6253000 9324600 9327700 5320900 6170800 5945700 4782700 5492300 2 2 2 2 2 2 2 2 2 2 2 3022100 4590400 83550 5856300 2565100 2408500 2651400 4177700 4369100 3291200 4546100 2814500 4288100 322020 5833400 2466700 2706000 2738100 4131700 4375900 3250900 4380000 2 2 2 2 2 2 2 2 2 2 2 749680000 600260000 149430000 7908 1433 7376 42097;42098;42099;42100 50631;50632;50633;50634;50635 50631 5 HGDPGDAAQQEAK Unmodified 1322.5851 0.58510641 127 O14737;O14737-2 PDCD5 Programmed cell death protein 5 yes no 0 0 0 0 By MS/MS 3 0 1 1 27.22 26.927 3 2.0188E-06 7875 20211116_3441_TMUAki_TMT10x_S_F3 111.79 97.119 62941 100670 0 81245 59360 56473 78097 38062 42455 34102 67583 58585 93860 2750.1 83885 57231 58645 77134 39509 45642 33469 64417 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 62941 100670 0 81245 59360 56473 78097 38062 42455 34102 67583 58585 93860 2750.1 83885 57231 58645 77134 39509 45642 33469 64417 1 1 0 1 1 1 1 1 1 1 1 6032400 0 6032400 7909 127 7377 42101 50636 50636 1 HGDVITIIDR Unmodified 1137.6142 0.6142217 1039 P46013;P46013-2 MKI67 Antigen KI-67 yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 1 1 1 1 2 39.345 39.295 3 0.00067092 10176 20211116_3431_TMUAki_TMT10x_P_F4 84.198 43.47 1514600 2381100 34135 2598800 2126900 1946700 1621800 1948800 1823500 1550100 2113000 1410500 2222600 165960 2626100 2028700 2023500 1677700 1969400 1856500 1530300 2029400 2 2 2 2 2 2 2 2 2 2 2 673290 1077000 23590 1152600 1390700 1329500 867690 843520 761540 705670 911020 627070 1005200 87854 1173200 1321800 1332600 904200 878030 784680 694880 874200 1 1 1 1 1 1 1 1 1 1 1 841270 1304100 10545 1446200 736130 617220 754100 1105300 1061900 844430 1202000 783380 1217400 78102 1452900 706920 690890 773510 1091300 1071800 835460 1155200 1 1 1 1 1 1 1 1 1 1 1 202410000 155620000 46796000 7910 1039 7378 42102;42103;42104 50637;50638 50637 2 HGEAQVK Unmodified 767.3926 0.3926016 722 P18669;Q8N0Y7 PGAM1;PGAM4 Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4 yes no 0 0 0 0 By MS/MS 3 0 1 1 25.005 24.702 3 0.017381 7006 20211116_3441_TMUAki_TMT10x_S_F3 70.912 46.94 116960 185780 2287.3 129810 113330 143780 135080 92601 100770 85147 110560 108920 173140 11778 136590 109350 144460 134820 96511 104370 83466 106350 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 116960 185780 2287.3 129810 113330 143780 135080 92601 100770 85147 110560 108920 173140 11778 136590 109350 144460 134820 96511 104370 83466 106350 1 1 1 1 1 1 1 1 1 1 1 3053200 0 3053200 7911 722 7379 42105 50639 50639 1 HGEIDYEAIVK Unmodified 1272.635 0.63501672 1357 P62333 PSMC6 26S protease regulatory subunit 10B yes yes 0 0 0 0 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 46.073 46.1 3 7.4774E-07 12791 20211116_3431_TMUAki_TMT10x_P_F4 129.89 96.003 9866500 15872000 158560 18114000 15164000 15653000 10450000 13838000 14153000 11822000 14319000 9187900 14819000 1040000 18284000 14432000 16057000 10961000 14101000 14242000 11629000 13808000 5 5 5 5 5 5 5 5 5 5 5 4641000 6876800 60991 7994500 9711900 10619000 5727600 5983500 6446200 5174600 5992200 4321700 6420900 512630 8116000 9215700 10552000 6040300 6293300 6510300 5087100 5794500 2 2 2 2 2 2 2 2 2 2 2 5225600 8995400 97572 10119000 5452600 5033700 4722800 7854600 7706600 6647300 8327200 4866200 8397900 527350 10168000 5215800 5505100 4921000 7807500 7731500 6541800 8013800 3 3 3 3 3 3 3 3 3 3 3 1241300000 774710000 466620000 7912 1357 7380 42106;42107;42108;42109;42110 50640;50641;50642;50643;50644 50641 5 HGEPEEDIVGLQAFQER Unmodified 1952.9228 0.9228189 354 O75694;O75694-2 NUP155 Nuclear pore complex protein Nup155 yes no 0 0 0 0 By MS/MS By MS/MS 2 0.894 2 1 2 3 2 52.97 52.797 3 1.4892E-29 16708 20211116_3429_TMUAki_TMT10x_P_F2 189.8 172.55 7359100 12019000 158300 11937000 10669000 15235000 9330900 10395000 10140000 8882700 9859000 6853200 11215000 791260 12233000 10205000 15208000 9559800 10768000 10270000 8737600 9519300 6 6 4 6 6 6 6 6 6 6 6 6313600 10318000 129480 10286000 9747600 14321000 8508300 9196600 8893000 7746000 8591900 5879500 9627200 679450 10556000 9322300 14225000 8707100 9565600 9019600 7624900 8297600 5 5 3 5 5 5 5 5 5 5 5 1045500 1701900 28823 1651900 921850 913430 822610 1198600 1246700 1136700 1267200 973670 1587800 111810 1677700 883160 982500 852730 1202400 1250500 1112700 1221800 1 1 1 1 1 1 1 1 1 1 1 1882600000 1461400000 421210000 7913 354 7381 42111;42112;42113;42114;42115 50645;50646;50647;50648;50649;50650;50651 50648 7 HGESAWNLENR Unmodified 1311.5956 0.59561152 722 P18669 PGAM1 Phosphoglycerate mutase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 1 1 1 1 3 1 32.306 32.242 3 7.2309E-08 9891 20211116_3441_TMUAki_TMT10x_S_F3 118.9 108.08 948360 1406700 0 1750500 3148300 1923300 1336800 922290 941960 850420 1356100 882940 1313800 99899 1764100 2972600 1926200 1438500 986090 990260 833520 1295400 3 3 0 3 3 3 3 3 3 3 3 948360 1406700 0 1750500 3148300 1923300 1336800 922290 941960 850420 1356100 882940 1313800 99899 1764100 2972600 1926200 1438500 986090 990260 833520 1295400 3 3 0 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 194890000 194890000 0 7914 722 7382 42116;42117;42118;42119 50652;50653;50654;50655 50655 4 HGEVCPAGWKPGSDTIKPDVQK Unmodified 2405.1798 0.17977864 1533 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 2 By MS/MS By MS/MS 6.75 1.88 1 2 4 5 5 7 40.904 41.067 4;5;6 5.1716E-28 11544 20211116_3436_TMUAki_TMT10x_P_F8 179.58 166.17 90255000 149720000 1208300 240970000 210160000 141410000 117740000 54988000 61555000 61125000 130950000 84032000 140050000 8574500 237850000 199150000 148260000 122520000 60454000 67543000 59445000 124180000 21 21 15 20 21 21 21 21 21 21 21 46634000 76136000 900050 118150000 190850000 125330000 101820000 32100000 36770000 33796000 66788000 43420000 71200000 5849800 117620000 180760000 125140000 105920000 37393000 41318000 32937000 63499000 11 11 10 10 11 11 11 11 11 11 11 43622000 73583000 308250 122820000 19312000 16086000 15921000 22888000 24786000 27329000 64164000 40612000 68845000 2724600 120220000 18397000 23124000 16601000 23061000 26224000 26508000 60678000 10 10 5 10 10 10 10 10 10 10 10 34477000000 29915000000 4562500000 7915 1533 7383 42120;42121;42122;42123;42124;42125;42126;42127;42128;42129;42130;42131 50656;50657;50658;50659;50660;50661;50662;50663;50664;50665;50666;50667;50668;50669;50670;50671;50672;50673;50674;50675;50676 50666 21 HGFCGIPITDTGR Unmodified 1429.6772 0.67723266 640 P12268 IMPDH2 Inosine-5'-monophosphate dehydrogenase 2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.88 0.781 3 3 2 4 4 40.214 40.485 2;3 0.00016808 11122 20211116_3446_TMUAki_TMT10x_S_F7 83.137 67.551 15593000 22913000 259230 27534000 33003000 30167000 19590000 19557000 19485000 17144000 21695000 14519000 21397000 1689400 27802000 31317000 30332000 20569000 20348000 19906000 16843000 20860000 11 11 9 11 11 11 11 11 11 11 11 12811000 18632000 180760 22479000 30379000 27859000 16936000 16522000 16230000 14224000 18029000 11929000 17400000 1387800 22741000 28796000 27794000 17860000 17302000 16606000 13986000 17336000 5 5 3 5 5 5 5 5 5 5 5 2781900 4280500 78470 5054900 2623200 2308300 2654300 3034900 3255300 2920000 3665600 2590800 3997000 301550 5061000 2520800 2537200 2709400 3045500 3300000 2856500 3523400 6 6 6 6 6 6 6 6 6 6 6 2306100000 1845500000 460600000 7916 640 7384 42132;42133;42134;42135;42136;42137;42138;42139 50677;50678;50679;50680;50681;50682;50683;50684;50685;50686;50687;50688;50689;50690 50687 14 HGFLEEFITPIVK Unmodified 1528.829 0.8289655 1500 Q02880;Q02880-2 TOP2B DNA topoisomerase 2-beta yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 76.262 76.344 3 3.444E-06 26735 20211116_3446_TMUAki_TMT10x_S_F7 104.87 91.439 4338600 7227400 53910 7088400 4684000 4688400 5032400 3195900 3366300 3369900 4475500 4040100 6743400 414780 7205200 4503300 4890700 5034800 3329900 3536900 3284100 4283100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4338600 7227400 53910 7088400 4684000 4688400 5032400 3195900 3366300 3369900 4475500 4040100 6743400 414780 7205200 4503300 4890700 5034800 3329900 3536900 3284100 4283100 1 1 1 1 1 1 1 1 1 1 1 396100000 0 396100000 7917 1500 7385 42140;42141;42142 50691;50692;50693 50692 3 HGFLILSR Unmodified 941.54469 0.54468557 1558 Q10570 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 43.271 43.131 3 0.00035158 14341 20211116_3441_TMUAki_TMT10x_S_F3 131.06 88.198 405400 672690 10106 771570 610510 707730 451050 502710 551950 522980 538980 377540 628060 44835 779190 581920 720320 468980 522080 556640 509940 520330 2 2 1 2 2 2 2 2 2 2 2 198290 292490 0 342540 392520 463940 240260 217670 252000 235690 243470 184620 273110 18093 347730 372470 459610 252030 234280 255550 229440 235130 1 1 0 1 1 1 1 1 1 1 1 207120 380200 10106 429030 217990 243790 210790 285040 299950 287290 295510 192920 354950 26742 431460 209450 260710 216950 287800 301090 280490 285200 1 1 1 1 1 1 1 1 1 1 1 82801000 41342000 41459000 7918 1558 7386 42143;42144;42145;42146 50694;50695;50696;50697 50697 4 HGFRQEYLDTLYR Unmodified 1696.8322 0.8321534 1272 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E yes yes 0 0 0 1 By MS/MS By MS/MS 7 0.707 2 4 2 4 4 41.714 42.017 3;4 2.2114E-18 12081 20211116_3435_TMUAki_TMT10x_P_F7 151.3 119.23 5685000 9164700 24807 9980700 7320700 8168800 6731700 6440900 5994500 6206900 7309800 5293100 8554700 364670 10097000 7003000 8394800 6836300 6628900 6177300 6071600 7010800 10 10 4 10 10 10 10 10 10 10 10 2635000 4328700 10521 4833400 4483600 5615500 3935700 3034200 2859200 3142500 3634000 2453300 4041000 119270 4906900 4284000 5614400 3987400 3218500 2983400 3064700 3481600 3 3 1 3 3 3 3 3 3 3 3 3050000 4836000 14286 5147400 2837100 2553300 2796100 3406700 3135200 3064400 3675700 2839800 4513600 245400 5190400 2719000 2780400 2848800 3410300 3193900 3007000 3529100 7 7 3 7 7 7 7 7 7 7 7 962890000 545540000 417350000 7919 1272 7387 42147;42148;42149;42150;42151;42152;42153;42154 50698;50699;50700;50701;50702;50703;50704;50705;50706;50707;50708 50700 11 HGGFVYYQEGCCLVR Unmodified 1843.8134 0.81340856 1895 Q4J6C6;Q4J6C6-4;Q4J6C6-3;Q4J6C6-2 PREPL Prolyl endopeptidase-like yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 44.883 45.408 3 5.1477E-21 13497 20211116_3435_TMUAki_TMT10x_P_F7 162.22 147.35 1062700 1737200 0 2001900 956600 938170 804440 1930300 1774500 1258500 1574500 989350 1622000 68164 2007700 912210 1043700 853960 1892500 1755700 1256800 1525000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1062700 1737200 0 2001900 956600 938170 804440 1930300 1774500 1258500 1574500 989350 1622000 68164 2007700 912210 1043700 853960 1892500 1755700 1256800 1525000 1 1 0 1 1 1 1 1 1 1 1 248720000 0 248720000 7920 1895 7388 42155;42156;42157 50709;50710;50711 50709 3 HGGSLGLGLAAMGTAR Oxidation (M) 1483.7565 0.75654561 2575 Q99460;Q99460-2 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 1 0 By MS/MS By MS/MS 4.33 3.35 3 1 2 4 2 35.893 36.066 3 4.9149E-10 8323 20211116_3428_TMUAki_TMT10x_P_F1 115.56 99.207 470140 816490 11361 880370 670380 610700 422450 682790 720900 582110 708760 437830 762110 51617 889580 637200 640390 450710 687560 719900 572660 684090 3 3 2 3 3 3 3 3 3 3 3 204270 338790 2270.8 338510 399290 424590 240190 255630 277750 229020 285280 190210 316120 21029 346640 378950 423430 253110 267640 281180 224770 274960 2 2 1 2 2 2 2 2 2 2 2 265870 477700 9090.6 541860 271090 186110 182260 427160 443160 353090 423490 247620 445990 30588 542940 258250 216960 197600 419920 438720 347900 409130 1 1 1 1 1 1 1 1 1 1 1 78611000 31072000 47539000 7921 2575 7389 42158;42159;42160;42161;42162;42163 50712;50713;50714;50715;50716 50712 2804 5 HGGSLGLGLAAMGTAR Unmodified 1467.7616 0.76163099 2575 Q99460;Q99460-2 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 0 0 By MS/MS 2 0 1 1 44.935 44.93 3 0.00016621 12187 20211116_3440_TMUAki_TMT10x_S_F2 75.969 58.237 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7922 2575 7389 42164 50717 50717 1 HGGTIPIVPTAEFQDR Unmodified 1736.8846 0.8845829 463 P00367;P00367-3;P00367-2 GLUD1 Glutamate dehydrogenase 1, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4.56 1.07 2 2 3 2 5 4 48.027 48.103 2;3 4.7175E-35 13895 20211116_3433_TMUAki_TMT10x_P_F5 199.51 177.36 22628000 36851000 154380 38298000 40509000 48146000 27666000 34410000 34865000 30361000 32593000 21068000 34391000 1933000 39116000 38518000 48132000 28957000 35558000 35074000 29819000 31512000 13 13 7 13 13 13 13 13 13 13 13 15571000 24936000 63636 25843000 33889000 42131000 22166000 24996000 25485000 21733000 22726000 14498000 23272000 1444700 26543000 32193000 41530000 23199000 26181000 25684000 21360000 22008000 8 8 3 8 8 8 8 8 8 8 8 7056200 11915000 90748 12456000 6620000 6014700 5499800 9414000 9380000 8628000 9867700 6570700 11120000 488310 12572000 6324900 6601100 5757400 9376400 9390000 8458900 9503900 5 5 4 5 5 5 5 5 5 5 5 10185000000 5913900000 4270700000 7923 463 7390 42165;42166;42167;42168;42169;42170;42171;42172;42173 50718;50719;50720;50721;50722;50723;50724;50725;50726;50727;50728;50729;50730 50722 13 HGGVIHIYVDK Unmodified 1236.6615 0.66150624 1711 Q14498;Q14498-2;Q14498-3 RBM39 RNA-binding protein 39 yes no 0 0 0 0 By MS/MS 5 0 1 1 36.448 36.61 4 0.017634 8213 20211116_3444_TMUAki_TMT10x_S_F5 57.348 28.008 322100 584050 0 656340 307630 286580 355050 343580 370590 293790 407860 299900 545250 26457 658940 296160 316040 358150 344960 377660 288980 392300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 322100 584050 0 656340 307630 286580 355050 343580 370590 293790 407860 299900 545250 26457 658940 296160 316040 358150 344960 377660 288980 392300 1 1 0 1 1 1 1 1 1 1 1 26405000 0 26405000 7924 1711 7391 42174 50731 50731 1 HGGYKPSDEHKTDLNPDNLQGGDDLDPNYVLSSR Unmodified 3752.7303 0.73027368 642 P12277 CKB Creatine kinase B-type yes yes 0 0 0 2 By MS/MS By MS/MS 6.14 0.639 1 4 2 4 3 49.17 49.445 5;6 5.6116E-24 15102 20211116_3435_TMUAki_TMT10x_P_F7 138.84 133.76 31858000 59707000 868030 64231000 42752000 78136000 36859000 45666000 45525000 43763000 45474000 29670000 55730000 3261500 65415000 40897000 78012000 37964000 48012000 45933000 42820000 43868000 11 11 10 11 11 11 11 11 11 11 11 19473000 35798000 467420 36476000 31149000 64869000 27390000 27961000 26357000 25609000 25792000 18135000 33406000 1872300 37589000 29801000 63503000 27947000 30221000 26839000 25108000 24898000 8 8 7 8 8 8 8 8 8 8 8 12385000 23909000 400610 27755000 11603000 13267000 9469300 17706000 19168000 18154000 19681000 11535000 22324000 1389200 27826000 11096000 14509000 10017000 17791000 19094000 17712000 18970000 3 3 3 3 3 3 3 3 3 3 3 8320600000 5560500000 2760000000 7925 642 7392 42175;42176;42177;42178;42179;42180;42181 50732;50733;50734;50735;50736;50737;50738;50739;50740;50741;50742 50737 11 HGHLCPIDTGLIEK Unmodified 1588.8032 0.80316145 811 P26358;P26358-2;P26358-3 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 41.801 41.946 4 9.0523E-07 10364 20211116_3444_TMUAki_TMT10x_S_F5 117.23 89.584 2032200 3309800 3324.3 4161300 1598300 1435500 1359400 2314000 2232900 1958800 2894000 1892200 3091500 155090 4144300 1526100 1650200 1418400 2297800 2256800 1927700 2771300 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2032200 3309800 3324.3 4161300 1598300 1435500 1359400 2314000 2232900 1958800 2894000 1892200 3091500 155090 4144300 1526100 1650200 1418400 2297800 2256800 1927700 2771300 3 3 1 3 3 3 3 3 3 3 3 204440000 0 204440000 7926 811 7393 42182;42183 50743;50744;50745 50743 3 HGINCFINR Unmodified 1129.5451 0.54509627 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 1.2 0.4 4 1 3 2 33.946 33.905 2;3 5.1977E-06 7539 20211116_3428_TMUAki_TMT10x_P_F1 183.9 163.62 1774500 2846300 31680 3361600 3978900 2968700 2025600 2389100 2210300 1922200 2924600 1652400 2657800 202230 3387100 3767600 3035500 2162500 2444300 2265800 1896600 2799100 5 5 4 5 5 5 5 5 5 5 5 1085100 1644900 20814 1875800 3453100 2449700 1398700 1342800 1284200 1087600 1661300 1010500 1535700 137250 1905900 3260300 2435300 1522700 1413500 1324900 1072700 1590900 3 3 2 3 3 3 3 3 3 3 3 689320 1201400 10866 1485800 525770 518990 626870 1046300 926010 834650 1263300 641910 1122100 64986 1481300 507330 600200 639830 1030800 940940 823880 1208200 2 2 2 2 2 2 2 2 2 2 2 472820000 272830000 200000000 7927 1429 7394 42184;42185;42186;42187;42188 50746;50747;50748;50749;50750 50747 5 HGIPTAQWK Unmodified 1036.5454 0.54541385 766 P22102;P22102-2 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 36.986 37.055 3 0.00082122 9058 20211116_3428_TMUAki_TMT10x_P_F1 88.177 73.487 1756700 2908300 39795 3132600 3215500 2419600 2211500 1682500 1662800 1498000 2592100 1636000 2714600 203160 3169300 3060400 2492400 2278700 1742400 1748600 1470600 2471700 3 3 3 3 3 3 3 3 3 3 3 947800 1501400 27714 1647800 2465700 1796500 1375800 892960 892810 804810 1381900 882700 1401500 125670 1672900 2338500 1800700 1437600 950860 946770 789650 1318000 2 2 2 2 2 2 2 2 2 2 2 808910 1406900 12081 1484800 749870 623120 835690 789570 770040 693150 1210200 753260 1313100 77497 1496400 721900 691680 841160 791490 801870 680940 1153800 1 1 1 1 1 1 1 1 1 1 1 83184000 56092000 27093000 7928 766 7395 42189;42190;42191 50751;50752;50753 50751 3 HGIVEDWDLMER Oxidation (M) 1514.6824 0.68237762 1296 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 1 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 46.92 46.766 3 0.00050764 15828 20211116_3441_TMUAki_TMT10x_S_F3 80.318 58.56 6419000 11125000 127010 12464000 9979400 10953000 8197400 8457400 7748700 7419400 9226500 5977200 10386000 645610 12598000 9528000 11195000 8394300 8693700 7955000 7288900 8854800 8 8 6 8 8 8 8 8 8 8 8 3511200 5934000 89728 6549900 7180600 8340400 5431200 4643000 4324300 3925200 4858200 3269800 5539300 407790 6665200 6845400 8303100 5566300 4885800 4466600 3863200 4670000 4 4 3 4 4 4 4 4 4 4 4 2907800 5190900 37282 5914000 2798800 2612200 2766100 3814400 3424300 3494200 4368300 2707400 4846300 237820 5932800 2682700 2891800 2827900 3808000 3488400 3425800 4184800 4 4 3 4 4 4 4 4 4 4 4 591120000 327480000 263640000 7929 1296 7396 42192;42193;42194;42195;42196;42197 50754;50755;50756;50757;50758;50759;50760;50761 50761 1747 8 HGKAPILIATDVASR Unmodified 1547.8784 0.87837531 710 P17844;P17844-2 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 1 By MS/MS By MS/MS 3.3 3.1 5 2 3 3 7 40.12 40.206 3;4 3.659E-11 12156 20211116_3439_TMUAki_TMT10x_S_F1 125.45 103.58 18997000 35691000 80558 30075000 35523000 28412000 23346000 23212000 24655000 19869000 26795000 17687000 33282000 1241400 31053000 33742000 28930000 24358000 23763000 25101000 19543000 25782000 9 9 4 9 9 9 9 9 9 9 9 6708800 11030000 33255 10605000 19739000 16187000 9451800 8985100 9369200 7481700 9369900 6246400 10290000 719960 10932000 18667000 15984000 10123000 9453900 9535200 7369000 9038800 4 4 1 4 4 4 4 4 4 4 4 12289000 24661000 47303 19470000 15784000 12225000 13894000 14227000 15286000 12387000 17425000 11440000 22992000 521440 20121000 15075000 12945000 14235000 14309000 15566000 12174000 16743000 5 5 3 5 5 5 5 5 5 5 5 1415900000 943820000 472090000 7930 710 7397 42198;42199;42200;42201;42202;42203;42204;42205;42206;42207 50762;50763;50764;50765;50766;50767;50768;50769;50770;50771;50772 50767 11 HGKNPVMELNEK Oxidation (M) 1410.6925 0.69254837 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 1 1 By MS/MS By matching 5 0 2 1 1 32.393 32.445 4 0.00024959 7687 20211116_3433_TMUAki_TMT10x_P_F5 86.772 69.405 713350 1173100 4230.2 1188900 2099700 1505200 948560 769160 943680 682640 928090 664240 1094700 82501 1216400 1984600 1497400 1022200 816580 959700 670270 895780 1 1 1 1 1 1 1 1 1 1 1 713350 1173100 4230.2 1188900 2099700 1505200 948560 769160 943680 682640 928090 664240 1094700 82501 1216400 1984600 1497400 1022200 816580 959700 670270 895780 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 147870000 140700000 7177100 7931 1576 7398 42208;42209 50773 50773 2129 1 HGKNPVMELNEK Unmodified 1394.6976 0.69763375 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 34.68 34.744 4 5.4883E-06 8663 20211116_3433_TMUAki_TMT10x_P_F5 111.94 91.066 535670 879130 0 916790 1290300 825120 671250 544570 523610 500910 798000 498740 820460 52122 931250 1221500 839930 708680 566530 548880 491020 761300 2 2 0 2 2 2 2 2 2 2 2 351220 552820 0 584250 1067900 675370 466430 340670 326150 326690 515060 327010 515960 38155 595170 1008800 674880 500230 362850 344640 319640 491010 1 1 0 1 1 1 1 1 1 1 1 184450 326300 0 332550 222430 149750 204820 203900 197460 174220 282930 171720 304500 13967 336080 212710 165050 208450 203690 204240 171380 270290 1 1 0 1 1 1 1 1 1 1 1 75614000 52709000 22905000 7932 1576 7398 42210;42211 50774;50775 50774 2 HGLEAISIMDSR Unmodified 1327.6554 0.65543458 820 P26640 VARS Valine--tRNA ligase yes yes 0 0 0 0 By MS/MS By MS/MS 4.25 0.829 1 1 2 3 1 46.064 46.14 3 7.8289E-13 12863 20211116_3431_TMUAki_TMT10x_P_F4 142.89 125.09 1440100 2258900 10781 2709100 1775800 1715400 1362100 1687500 1700800 1505200 1958900 1340900 2109500 134140 2717100 1693000 1808200 1413800 1711600 1724600 1477600 1881700 2 2 2 2 2 2 2 2 2 2 2 572850 799010 978.11 949830 1032700 1097400 756910 591830 540590 530380 647940 533390 746120 54845 960540 983310 1097500 775490 625410 563240 520530 621720 1 1 1 1 1 1 1 1 1 1 1 867200 1459900 9803.2 1759200 743160 617950 605190 1095600 1160200 974820 1311000 807520 1363400 79296 1756500 709700 710660 638270 1086200 1161400 957030 1260000 1 1 1 1 1 1 1 1 1 1 1 211930000 56523000 155400000 7933 820 7399 42212;42213;42214;42215 50776;50777;50778;50779 50777 4 HGLEAISIMDSR Oxidation (M) 1343.6503 0.65034921 820 P26640 VARS Valine--tRNA ligase yes yes 0 0 1 0 By MS/MS By MS/MS 4 0.632 1 3 1 1 4 36.953 36.971 3 0.0014471 11770 20211116_3441_TMUAki_TMT10x_S_F3 72.705 58.014 3801600 5872100 150270 7155100 5395300 5122900 3996300 4406500 4729600 3995800 5407000 3540700 5484100 477540 7178300 5147200 5328100 4149500 4504100 4803500 3919400 5195000 7 7 7 7 7 7 7 7 7 7 7 1252300 1638500 31420 2061800 2828900 2829100 1546300 1364700 1428600 1220500 1600600 1166200 1530500 155190 2085000 2682100 2801900 1631900 1457200 1464600 1197900 1538700 1 1 1 1 1 1 1 1 1 1 1 2549300 4233700 118850 5093300 2566500 2293800 2450000 3041800 3301000 2775300 3806500 2374500 3953700 322350 5093400 2465100 2526300 2517600 3046900 3338900 2721500 3656300 6 6 6 6 6 6 6 6 6 6 6 434970000 313950000 121030000 7934 820 7399 42216;42217;42218;42219;42220 50780;50781;50782;50783;50784;50785;50786;50787 50782 984 8 HGLEFYGYIK Unmodified 1225.6132 0.61315906 281 O60678 PRMT3 Protein arginine N-methyltransferase 3 yes yes 0 0 0 0 By MS/MS 8 0 1 1 54.041 53.972 3 0.0023903 15261 20211116_3447_TMUAki_TMT10x_S_F8 74.162 50.176 1408000 2314700 35206 2413900 1390800 1324500 1299900 2077700 1800900 1764800 1951100 1311200 2160300 149300 2439300 1333400 1433500 1338800 2065100 1815500 1736500 1877500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1408000 2314700 35206 2413900 1390800 1324500 1299900 2077700 1800900 1764800 1951100 1311200 2160300 149300 2439300 1333400 1433500 1338800 2065100 1815500 1736500 1877500 1 1 1 1 1 1 1 1 1 1 1 114390000 0 114390000 7935 281 7400 42221 50788 50788 1 HGLEVIYMIEPIDEYCVQQLK Oxidation (M) 2592.2604 0.26039673 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 1 0 By MS/MS By MS/MS 4.88 1.45 1 2 4 4 3 3 8 9 76.39 76.38 3;4 2.1253E-35 25606 20211116_3442_TMUAki_TMT10x_S_F4 194.05 179.89 78437000 141190000 521510 119880000 89331000 156190000 105890000 113510000 125100000 119510000 107940000 73033000 131670000 5852900 124340000 86072000 155920000 107140000 117740000 125810000 116480000 104660000 24 24 12 24 24 24 24 24 24 24 24 40906000 71604000 315750 62687000 36480000 93666000 46892000 59125000 63475000 60108000 53151000 38089000 66781000 2990400 65044000 35250000 92734000 47533000 61887000 63483000 58664000 51592000 12 12 8 12 12 12 12 12 12 12 12 37531000 69590000 205760 57192000 52852000 62527000 58997000 54385000 61621000 59405000 54793000 34944000 64889000 2862500 59301000 50822000 63186000 59603000 55856000 62332000 57811000 53068000 12 12 4 12 12 12 12 12 12 12 12 27061000000 13456000000 13605000000 7936 544 7401 42222;42223;42224;42225;42226;42227;42228;42229;42230;42231;42232;42233;42234;42235;42236;42237;42238 50789;50790;50791;50792;50793;50794;50795;50796;50797;50798;50799;50800;50801;50802;50803;50804;50805;50806;50807;50808;50809;50810;50811;50812 50803 485 24 HGLEVIYMIEPIDEYCVQQLK Unmodified 2576.2655 0.2654821 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 By MS/MS 3 0 1 1 78.426 78.355 3 0.061903 28560 20211116_3441_TMUAki_TMT10x_S_F3 36.805 16.179 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7937 544 7401 42239 50813 50813 1 HGLIPNLLGEGIYAR Unmodified 1621.894 0.89402537 933 P35573;P35573-2;P35573-3 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes no 0 0 0 0 By MS/MS 1.5 0.5 1 1 2 64.987 64.749 3 0.014936 22098 20211116_3439_TMUAki_TMT10x_S_F1 47.506 32.24 1937400 3510500 6035.3 3172400 2345000 2101600 2214300 2165400 2132300 2354500 2530900 1803900 3274400 171950 3244200 2245600 2208500 2250300 2204100 2187000 2291800 2429100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1937400 3510500 6035.3 3172400 2345000 2101600 2214300 2165400 2132300 2354500 2530900 1803900 3274400 171950 3244200 2245600 2208500 2250300 2204100 2187000 2291800 2429100 1 1 1 1 1 1 1 1 1 1 1 276860000 0 276860000 7938 933 7402 42240;42241 50814;50815 50814 2 HGLLVPNNTTDQELQHIR Unmodified 2084.0763 0.076299846 1258 P56537 EIF6 Eukaryotic translation initiation factor 6 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.935 1 4 5 6 7 9 38.551 38.632 3;4 2.2897E-47 11041 20211116_3433_TMUAki_TMT10x_P_F5 211.75 198.09 27541000 45999000 219910 53432000 41737000 38755000 28741000 38264000 38745000 32552000 43399000 25643000 42950000 1899500 53765000 39694000 40375000 30143000 38758000 39144000 32027000 41722000 26 26 11 26 26 26 26 26 26 26 26 10713000 16328000 28150 19081000 24622000 25520000 13801000 14719000 14144000 11909000 15677000 9974300 15246000 850270 19368000 23331000 25359000 14575000 15427000 14429000 11747000 15076000 7 7 3 7 7 7 7 7 7 7 7 16828000 29670000 191760 34350000 17115000 13234000 14941000 23544000 24601000 20643000 27722000 15669000 27703000 1049300 34397000 16363000 15016000 15568000 23331000 24715000 20281000 26646000 19 19 8 19 19 19 19 19 19 19 19 12073000000 7540100000 4532700000 7939 1258 7403 42242;42243;42244;42245;42246;42247;42248;42249;42250;42251;42252;42253;42254;42255;42256;42257 50816;50817;50818;50819;50820;50821;50822;50823;50824;50825;50826;50827;50828;50829;50830;50831;50832;50833;50834;50835;50836;50837;50838;50839;50840;50841;50842;50843;50844;50845;50846 50823 31 HGLTEELLSR Unmodified 1153.6091 0.60913632 3172 Q9ULT8 HECTD1 E3 ubiquitin-protein ligase HECTD1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 39.215 39.395 3 0.058711 10588 20211116_3442_TMUAki_TMT10x_S_F4 39.293 21.257 1183300 2026900 0 2008900 1581000 1028400 1266100 1539700 1497800 1485500 1724200 1101700 1891200 96767 2036000 1507600 1119600 1307900 1538000 1521700 1453100 1656200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1183300 2026900 0 2008900 1581000 1028400 1266100 1539700 1497800 1485500 1724200 1101700 1891200 96767 2036000 1507600 1119600 1307900 1538000 1521700 1453100 1656200 1 1 0 1 1 1 1 1 1 1 1 29653000 0 29653000 7940 3172 7404 42258 50847 50847 1 HGLYLPTR Unmodified 955.52395 0.52395013 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 33.703 33.703 3 0.00067918 9387 20211116_3439_TMUAki_TMT10x_S_F1 116.25 82.064 255580 447730 8460.7 440660 648710 644140 322940 317500 376030 431520 339700 238030 417750 34580 453090 614340 636320 346250 342710 378940 416750 328820 1 1 1 1 1 1 1 1 1 1 1 255580 447730 8460.7 440660 648710 644140 322940 317500 376030 431520 339700 238030 417750 34580 453090 614340 636320 346250 342710 378940 416750 328820 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 98520000 98520000 0 7941 1092 7405 42259;42260 50848;50849 50849 2 HGNPEEEEWLTAER Unmodified 1695.7489 0.74887728 2386 Q93008;Q93008-1 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 39.052 39.043 3 5.7507E-14 9657 20211116_3428_TMUAki_TMT10x_P_F1 145.49 133.7 1124300 1758700 17438 2019000 1737100 1682900 1174100 1858600 1725600 1431300 1708500 1046900 1642100 118040 2036300 1652500 1739100 1237400 1868100 1730700 1415500 1648600 3 3 3 3 3 3 3 3 3 3 3 430780 608220 18.109 698150 1059600 1079600 657590 593470 584610 442200 578400 401100 567870 44538 711580 1005900 1065400 685780 623410 597720 438100 558150 1 1 1 1 1 1 1 1 1 1 1 693480 1150500 17420 1320800 677540 603320 516470 1265200 1141000 989080 1130100 645830 1074200 73506 1324700 646670 673750 551630 1244700 1133000 977360 1090500 2 2 2 2 2 2 2 2 2 2 2 143300000 89428000 53873000 7942 2386 7406 42261;42262;42263;42264 50850;50851;50852;50853 50850 4 HGNQYIQVNEPWK Unmodified 1611.7794 0.77938954 1254 P56192 MARS Methionine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 By MS/MS 6 0 1 1 45.588 45.753 3 0.10672 12067 20211116_3445_TMUAki_TMT10x_S_F6 32.61 17.638 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7943 1254 7407 42265 50854 50854 1 HGNQYIQVNEPWKR Unmodified 1767.8805 0.88050057 1254 P56192 MARS Methionine--tRNA ligase, cytoplasmic yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 37.186 37.55 4 1.7507E-09 8885 20211116_3436_TMUAki_TMT10x_P_F8 131.79 118.65 1231000 2187800 26429 2370400 2698700 2461300 1726000 1620500 1586900 1608300 2085300 1146400 2042100 141370 2406700 2564400 2482900 1797300 1689700 1638200 1571200 1996200 6 6 5 6 6 6 6 6 6 6 6 596540 1056500 2571.1 1127300 2081100 1925700 1210900 859410 811750 821570 1017900 555410 986120 66770 1157000 1973400 1888500 1261400 926470 850600 803950 975590 3 3 2 3 3 3 3 3 3 3 3 634480 1131300 23858 1243100 617540 535650 515130 761140 775140 786710 1067400 590940 1056000 74601 1249700 590990 594390 535920 763260 787560 767280 1020600 3 3 3 3 3 3 3 3 3 3 3 92976000 55806000 37171000 7944 1254 7408 42266;42267 50855;50856;50857;50858;50859;50860 50857 6 HGSLGFLPR Unmodified 982.53485 0.53484916 975 P39023 RPL3 60S ribosomal protein L3 yes yes 0 0 0 0 By MS/MS By MS/MS 3.9 1.95 3 4 1 4 4 4 1 10 11 37.023 37.039 2;3 0.00012118 8758 20211116_3436_TMUAki_TMT10x_P_F8 91.867 48.059 6274200 10041000 158850 11214000 12143000 11978000 8272000 8485400 8631500 7187700 8861700 5843000 9373600 737130 11369000 11555000 12077000 8604200 8764800 8773500 7073300 8541400 17 17 12 17 17 17 17 17 17 17 17 4161100 6618800 123500 7495700 10037000 9975000 6085100 5504900 5728500 4650500 5740100 3875300 6179300 541160 7622000 9531800 9908400 6368000 5797000 5843800 4577100 5536900 6 6 5 6 6 6 6 6 6 6 6 2113100 3422100 35356 3718100 2106200 2003000 2186900 2980500 2903000 2537200 3121600 1967700 3194300 195970 3746600 2023100 2168300 2236200 2967800 2929700 2496200 3004500 11 11 7 11 11 11 11 11 11 11 11 1751700000 1270000000 481700000 7945 975 7409 42268;42269;42270;42271;42272;42273;42274;42275;42276;42277;42278;42279;42280;42281;42282;42283;42284;42285;42286;42287;42288 50861;50862;50863;50864;50865;50866;50867;50868;50869;50870;50871;50872;50873;50874;50875;50876;50877;50878;50879;50880;50881;50882;50883 50869 23 HGTWSNWPQQLNNIR Unmodified 1849.8972 0.89721327 3388 yes no 0 0 0 0 By MS/MS 2 0 1 1 41.04 40.768 4 0.10319 11827 20211116_3429_TMUAki_TMT10x_P_F2 29.324 13.185 + 406130 601430 8373.1 824400 899160 961540 508980 554430 527480 457510 596800 378210 562030 48380 827320 852860 961950 537250 581350 538270 450820 573570 1 1 1 1 1 1 1 1 1 1 1 406130 601430 8373.1 824400 899160 961540 508980 554430 527480 457510 596800 378210 562030 48380 827320 852860 961950 537250 581350 538270 450820 573570 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 75047000 75047000 0 7946 3388 7410 42289 50884 50884 1 HGVDHQVISVTFEK Unmodified 1594.8104 0.81035532 1753 Q15020 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes yes 0 0 0 0 By MS/MS 6 0 2 2 41.6 41.764 4 8.771E-05 10395 20211116_3445_TMUAki_TMT10x_S_F6 92.468 66.529 908400 1422200 0 1579700 801290 776580 827790 1288600 1270100 1052500 1322300 845740 1327700 65424 1588500 768430 852180 851970 1277200 1274600 1037700 1273900 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 908400 1422200 0 1579700 801290 776580 827790 1288600 1270100 1052500 1322300 845740 1327700 65424 1588500 768430 852180 851970 1277200 1274600 1037700 1273900 2 2 0 2 2 2 2 2 2 2 2 148510000 0 148510000 7947 1753 7411 42290;42291 50885;50886 50885 2 HGVDVEVQGPHEAR Unmodified 1528.7383 0.73825301 2866 Q9HCE1;Q9HCE1-2 MOV10 Putative helicase MOV-10 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 28.414 28.159 4 1.4578E-06 6826 20211116_3429_TMUAki_TMT10x_P_F2 114.56 100.53 310790 488120 4328.9 444050 325730 390830 332950 295810 314230 271690 388670 289400 455300 28433 455320 312660 399300 336770 304830 323140 266340 372630 2 2 1 2 2 2 2 2 2 2 2 138940 198710 0 183220 142490 215250 131630 128320 118170 114610 155330 129360 185360 9991.9 188490 136250 215350 133670 134440 122120 112500 148690 1 1 0 1 1 1 1 1 1 1 1 171850 289410 4328.9 260830 183240 175590 201320 167490 196060 157080 233340 160040 269940 18441 266830 176410 183950 203100 170390 201010 153840 223940 1 1 1 1 1 1 1 1 1 1 1 23288000 6949400 16338000 7948 2866 7412 42292;42293 50887;50888 50887 2 HGVESTLER Unmodified 1026.5094 0.50942227 1511 Q04637;Q04637-3;Q04637-8;Q04637-5;Q04637-4;Q04637-9;Q04637-6;Q04637-7 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 27.711 27.428 3 0.030596 8041 20211116_3441_TMUAki_TMT10x_S_F3 49.06 21.535 133860 220790 3307.6 212660 153520 113510 154070 99860 105230 89133 174070 124670 205990 14456 216040 147420 121450 154740 101900 111630 87494 165790 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 133860 220790 3307.6 212660 153520 113510 154070 99860 105230 89133 174070 124670 205990 14456 216040 147420 121450 154740 101900 111630 87494 165790 1 1 1 1 1 1 1 1 1 1 1 2640400 0 2640400 7949 1511 7413 42294 50889 50889 1 HGVFLVR Unmodified 826.48136 0.48135703 1044;1045 P46108;P46108-2 CRK Adapter molecule crk no no 0 0 0 0 By MS/MS By MS/MS 1.2 0.4 4 1 3 2 34.115 34.066 2;3 0.0021513 7563 20211116_3428_TMUAki_TMT10x_P_F1 106.76 90.607 2330900 3524500 59173 3736000 3310400 3382800 2553200 2455800 2579200 2330200 2862400 2170600 3289500 251150 3791100 3158000 3447100 2630200 2539900 2632800 2280900 2752500 5 5 2 5 5 5 5 5 5 5 5 1292800 1886800 30851 2031600 2224300 2429300 1466000 1408000 1453800 1321500 1562800 1203900 1761200 142310 2068300 2115200 2427300 1526300 1480500 1483400 1294200 1504200 3 3 1 3 3 3 3 3 3 3 3 1038000 1637700 28323 1704400 1086000 953510 1087200 1047800 1125500 1008600 1299600 966690 1528400 108830 1722800 1042800 1019800 1103900 1059400 1149500 986690 1248300 2 2 1 2 2 2 2 2 2 2 2 265220000 190840000 74385000 7950 1044;1045 7414 42295;42296;42297;42298;42299 50890;50891;50892;50893;50894 50890 5 HGVIVAADSR Unmodified 1023.5461 0.54614213 838 P28074;P28074-2 PSMB5 Proteasome subunit beta type-5 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.957 1 2 2 1 4 2 27.735 27.606 2;3 1.0083E-06 5289 20211116_3431_TMUAki_TMT10x_P_F4 156.51 125.28 704860 1116500 19260 1083900 818630 1037000 822810 638660 712090 678280 887450 656430 1041700 76969 1107300 786150 1050400 830960 670640 735500 660810 850660 6 6 5 6 6 6 6 6 6 6 6 560270 866150 16309 851180 666400 894930 634920 513190 571830 548040 694020 521780 808160 62124 870060 639100 900420 643720 542080 588840 533810 665710 4 4 3 4 4 4 4 4 4 4 4 144590 250390 2950.9 232690 152240 142080 187880 125480 140260 130240 193430 134650 233570 14845 237280 147050 149960 187240 128560 146660 127010 184950 2 2 2 2 2 2 2 2 2 2 2 32658000 23545000 9113300 7951 838 7415 42300;42301;42302;42303;42304;42305 50895;50896;50897;50898;50899;50900 50897 6 HGVPISVTGIAQVK Unmodified 1404.8089 0.80889876 373 O75955 FLOT1 Flotillin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 2 1 1 2 49.167 49.05 3 5.3757E-20 13583 20211116_3428_TMUAki_TMT10x_P_F1 156.14 138.77 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7952 373 7416 42306;42307;42308 50901;50902;50903 50901 3 HGVQECILLVTQR Unmodified 1551.8191 0.81914587 2382 Q92974;Q92974-2;Q92974-3 ARHGEF2 Rho guanine nucleotide exchange factor 2 yes no 0 0 0 0 By MS/MS 7 0 1 1 45.362 45.867 3 0.012112 14152 20211116_3446_TMUAki_TMT10x_S_F7 55.213 32.527 4678100 8341300 48651 9106000 3920800 3881400 3609700 5250600 5239400 4981300 5560200 4356200 7786200 422580 9157500 3754600 4307200 3728200 5261300 5270300 4876100 5353800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4678100 8341300 48651 9106000 3920800 3881400 3609700 5250600 5239400 4981300 5560200 4356200 7786200 422580 9157500 3754600 4307200 3728200 5261300 5270300 4876100 5353800 2 2 2 2 2 2 2 2 2 2 2 311270000 0 311270000 7953 2382 7417 42309 50904;50905 50904 2 HGVVPLATYMR Oxidation (M) 1258.6492 0.64922699 1052 P46778 RPL21 60S ribosomal protein L21 yes yes 0 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 34.838 34.832 3 0.002635 7872 20211116_3428_TMUAki_TMT10x_P_F1 68.49 46.962 1090000 1950700 0 2027000 2772400 2622600 1545600 1898300 1913400 1443200 1799800 1014900 1820500 107860 2071400 2627000 2618800 1643300 1953000 1926400 1428300 1739700 4 4 0 4 4 4 4 4 4 4 4 769880 1347900 0 1430300 2398200 2375800 1240700 1286700 1329100 1014500 1248500 716800 1258000 82377 1467400 2270100 2337500 1321700 1355000 1345400 1002000 1206900 3 3 0 3 3 3 3 3 3 3 3 320170 602840 0 596720 374160 246840 304960 611610 584290 428730 551310 298090 562500 25481 603960 356910 281240 321600 597960 581020 426250 532850 1 1 0 1 1 1 1 1 1 1 1 290810000 194700000 96107000 7954 1052 7418 42310;42311 50906;50907;50908;50909 50907 1360 4 HGVVPLATYMR Unmodified 1242.6543 0.65431237 1052 P46778 RPL21 60S ribosomal protein L21 yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 42.374 42.346 3 1.2844E-06 12522 20211116_3429_TMUAki_TMT10x_P_F2 121.6 67.847 2529000 4243200 130910 4756800 5083000 4937700 3267600 3092100 2940000 2805700 3555900 2355800 3961200 367450 4819200 4836100 4977600 3399200 3228400 3027200 2752000 3411200 4 4 4 4 4 4 4 4 4 4 4 1879800 3070900 99927 3430600 4404500 4371300 2744800 2317700 2143600 2049800 2604200 1751100 2866800 284340 3488400 4187600 4349000 2852400 2452100 2223400 2013000 2497900 3 3 3 3 3 3 3 3 3 3 3 649190 1172300 30987 1326300 678490 566420 522770 774360 796420 755870 951780 604690 1094400 83111 1330800 648530 628570 546880 776260 803760 738990 913330 1 1 1 1 1 1 1 1 1 1 1 390070000 292100000 97968000 7955 1052 7418 42312;42313;42314;42315;42316;42317 50910;50911;50912;50913 50911 4 HGVYNPNK Unmodified 927.45626 0.45626449 989 P40926 MDH2 Malate dehydrogenase, mitochondrial yes yes 0 0 0 0 By MS/MS 5 0 1 1 27.845 27.773 3 0.0078132 5812 20211116_3433_TMUAki_TMT10x_P_F5 71.296 54.332 634230 1047900 16680 748620 599340 936180 596270 508300 616500 509660 678220 590660 976700 67638 787660 575610 932530 605610 538440 628480 497700 652340 2 2 2 2 2 2 2 2 2 2 2 634230 1047900 16680 748620 599340 936180 596270 508300 616500 509660 678220 590660 976700 67638 787660 575610 932530 605610 538440 628480 497700 652340 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6473500 6473500 0 7956 989 7419 42318 50914;50915 50914 2 HGYEKPTPIQTQAIPAIMSGR Oxidation (M) 2310.1791 0.17905036 2049 Q7L014 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 0 0 1 1 By MS/MS By MS/MS 4 3.29 2 1 2 2 3 42.65 42.669 4 1.04E-13 11038 20211116_3436_TMUAki_TMT10x_P_F8 124.82 116.22 2767100 4670900 72566 5450900 4131100 4696900 2814500 5286500 5574100 4532900 4519200 2576900 4361400 277900 5494500 3931300 4844700 3009200 5322600 5512500 4458100 4392200 7 7 3 7 7 7 7 7 7 7 7 1109600 1870400 47359 2318700 2881100 3441900 1712100 2179100 2302000 1969200 1867100 1033500 1747000 157620 2350600 2735800 3408800 1816000 2273000 2300700 1931900 1814600 3 3 2 3 3 3 3 3 3 3 3 1657500 2800500 25207 3132200 1250000 1255000 1102400 3107400 3272100 2563700 2652100 1543400 2614400 120270 3143800 1195500 1435900 1193100 3049600 3211900 2526200 2577600 4 4 1 4 4 4 4 4 4 4 4 842950000 565120000 277830000 7957 2049 7420 42319;42320;42321;42322;42323 50916;50917;50918;50919;50920;50921;50922 50918 2563 7 HGYEKPTPIQTQAIPAIMSGR Unmodified 2294.1841 0.18413574 2049 Q7L014 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 0 0 0 1 By MS/MS 2 0 1 1 49.874 49.608 4 1.7283E-06 15441 20211116_3429_TMUAki_TMT10x_P_F2 82.56 64.265 1732300 2809300 9767.4 3536400 3959200 4012900 2664200 1955000 1855500 1904600 2374700 1613000 2624000 183910 3563500 3764300 4012400 2745100 2090100 1941400 1862200 2274800 1 1 1 1 1 1 1 1 1 1 1 1732300 2809300 9767.4 3536400 3959200 4012900 2664200 1955000 1855500 1904600 2374700 1613000 2624000 183910 3563500 3764300 4012400 2745100 2090100 1941400 1862200 2274800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 411860000 411860000 0 7958 2049 7420 42324 50923 50923 1 HGYIGEFEIIDDHR Unmodified 1699.7954 0.79543354 1339 P62244 RPS15A 40S ribosomal protein S15a yes yes 0 0 0 0 By MS/MS By MS/MS 2.94 1.39 3 4 4 4 1 1 8 9 47.645 47.601 3;4 1.4176E-29 14995 20211116_3430_TMUAki_TMT10x_P_F3 204.85 192.93 46567000 79437000 529830 88794000 52152000 68264000 50689000 47150000 49682000 45778000 60341000 43362000 74158000 4236100 89616000 49996000 70335000 51461000 48963000 50965000 44766000 57879000 20 20 15 20 20 20 20 20 20 20 20 25297000 41821000 255140 46438000 35108000 50016000 30718000 23628000 25487000 23825000 31348000 23555000 39041000 2420300 47101000 33565000 50139000 31226000 25361000 26365000 23261000 30059000 9 9 6 9 9 9 9 9 9 9 9 21271000 37615000 274680 42356000 17044000 18248000 19971000 23522000 24195000 21953000 28992000 19807000 35117000 1815800 42515000 16432000 20195000 20235000 23603000 24600000 21505000 27819000 11 11 9 11 11 11 11 11 11 11 11 12962000000 7186300000 5775800000 7959 1339 7421 42325;42326;42327;42328;42329;42330;42331;42332;42333;42334;42335;42336;42337;42338;42339;42340;42341 50924;50925;50926;50927;50928;50929;50930;50931;50932;50933;50934;50935;50936;50937;50938;50939;50940;50941;50942;50943 50929 20 HGYIGEFEIIDDHRAGK Unmodified 1955.949 0.94897407 1339 P62244 RPS15A 40S ribosomal protein S15a yes yes 0 0 0 1 By MS/MS By MS/MS 5.4 1.02 1 2 1 1 2 3 44.486 44.699 5 1.2277E-10 12235 20211116_3431_TMUAki_TMT10x_P_F4 122.93 107.54 10277000 20014000 54156 18433000 14008000 16438000 11227000 14664000 13637000 10441000 13647000 9569100 18669000 874630 18887000 13360000 16829000 11608000 14872000 13769000 10371000 13164000 5 5 2 5 5 5 5 5 5 5 5 4151700 8558700 0 7699500 7567400 11947000 5857100 6503700 5849800 4413800 5516700 3865300 7982900 357120 7979000 7210700 11787000 6030300 6824700 5939700 4396900 5332100 2 2 0 2 2 2 2 2 2 2 2 6125800 11455000 54156 10733000 6440700 4490500 5369500 8160300 7787600 6027400 8130100 5703800 10686000 517520 10908000 6149000 5042100 5577400 8047700 7828900 5974600 7832200 3 3 2 3 3 3 3 3 3 3 3 1380500000 826630000 553830000 7960 1339 7422 42342;42343;42344;42345;42346 50944;50945;50946;50947;50948 50944 5 HHCPNTPIILVGTK Unmodified 1585.8399 0.83988131 1390 P63000;P63000-2 RAC1 Ras-related C3 botulinum toxin substrate 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.6 3.41 4 1 5 4 6 31.941 32.046 3;4 4.4708E-19 11007 20211116_3439_TMUAki_TMT10x_S_F1 165.64 151.29 9660200 15953000 140090 18312000 19700000 18045000 11670000 13138000 13338000 10886000 14014000 8995500 14895000 1050100 18511000 18695000 18290000 12309000 13538000 13520000 10724000 13498000 13 13 6 13 13 13 13 13 13 13 13 6542300 10721000 102770 12368000 16902000 15499000 8763600 9108400 9381300 7546500 9484500 6092200 10010000 772780 12548000 16008000 15452000 9334000 9536600 9520500 7434700 9146100 5 5 4 5 5 5 5 5 5 5 5 3117900 5232100 37325 5944800 2797900 2546600 2906700 4029300 3956900 3339300 4529700 2903300 4884800 277320 5963500 2687100 2837200 2975200 4001200 3999900 3289800 4351900 8 8 2 8 8 8 8 8 8 8 8 2496900000 1582700000 914230000 7961 1390 7423 42347;42348;42349;42350;42351;42352;42353;42354;42355;42356 50949;50950;50951;50952;50953;50954;50955;50956;50957;50958;50959;50960;50961 50955 13 HHGDVMDLQFFDQER Oxidation (M) 1888.8162 0.81624534 2251 Q8NFH3;Q8NFH3-2 NUP43 Nucleoporin Nup43 yes no 0 0 1 0 By MS/MS By MS/MS 2.62 0.484 3 5 4 4 41.7 41.601 3;4 2.404E-14 12356 20211116_3430_TMUAki_TMT10x_P_F3 126.71 115.44 362300000 535010000 15334 553270000 735880000 699650000 385670000 408310000 420490000 388470000 482500000 337260000 499290000 25252000 565320000 696140000 697190000 410590000 429250000 428450000 380220000 463530000 8 8 2 8 8 8 8 8 8 8 8 347530000 511230000 11179 526440000 714510000 686670000 370290000 389530000 404040000 372430000 462370000 323510000 477090000 24444000 538380000 675830000 682970000 394640000 410530000 411640000 364440000 444230000 5 5 1 5 5 5 5 5 5 5 5 14768000 23772000 4155.4 26826000 21371000 12984000 15384000 18778000 16444000 16040000 20134000 13747000 22193000 807600 26944000 20308000 14212000 15951000 18718000 16814000 15779000 19308000 3 3 1 3 3 3 3 3 3 3 3 694250000 446550000 247710000 7962 2251 7424 42357;42358;42359;42360;42361;42362;42363;42364 50962;50963;50964;50965;50966 50964 2641 5 HHGIPFYVAAPSSSCDLR Unmodified 2012.9527 0.95267924 2681 Q9BV20;Q9BV20-2 MRI1 Methylthioribose-1-phosphate isomerase yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 42.693 42.796 3;4 0.00015295 11099 20211116_3436_TMUAki_TMT10x_P_F8 73.279 64.348 2491000 4334700 0 4199300 3330000 3019600 2468900 4033300 4833900 3638900 3944600 2319300 4044200 208450 4275900 3170700 3171800 2622600 4037800 4782600 3570200 3832700 2 2 0 2 2 2 2 2 2 2 2 679120 1091700 0 1052700 1669400 1655100 904910 843090 961590 739860 960680 632280 1018500 65197 1085700 1581100 1630700 959610 895080 975740 726840 926760 1 1 0 1 1 1 1 1 1 1 1 1811900 3243000 0 3146600 1660600 1364500 1564000 3190200 3872300 2899000 2983900 1687000 3025700 143250 3190200 1589500 1541100 1663000 3142700 3806900 2843300 2905900 1 1 0 1 1 1 1 1 1 1 1 206640000 122030000 84607000 7963 2681 7425 42365;42366;42367 50967;50968;50969 50967 3 HHGPQTLYLPVTLSSIPVFQR Unmodified 2389.2906 0.29064972 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 68.564 68.517 4 3.0749E-19 22067 20211116_3433_TMUAki_TMT10x_P_F5 147.16 134.8 15394000 24459000 260920 23311000 16134000 21794000 16783000 15575000 13317000 14935000 18854000 14335000 22818000 1473300 23839000 15498000 22156000 16883000 16130000 13896000 14612000 18017000 6 6 3 6 6 6 6 6 6 6 6 8725700 13361000 260920 12906000 8431400 15386000 9271300 9113600 7522600 8811400 10484000 8126500 12466000 962470 13235000 8121400 15381000 9306200 9573600 7834600 8618100 10022000 3 3 3 3 3 3 3 3 3 3 3 6668300 11097000 0 10405000 7702300 6407500 7511700 6461000 5794700 6123200 8370300 6208400 10352000 510860 10604000 7376800 6775300 7576300 6556300 6061600 5994100 7994800 3 3 0 3 3 3 3 3 3 3 3 5988200000 3493800000 2494300000 7964 1730 7426 42368;42369;42370;42371;42372 50970;50971;50972;50973;50974;50975 50971 6 HHLQPENPGPGGAAPSLEQNR Unmodified 2205.0675 0.067526074 1724 Q14684;Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 0 0 By MS/MS 4.5 0.5 2 2 4 31.193 31.178 3;4 2.8111E-44 6845 20211116_3431_TMUAki_TMT10x_P_F4 199.36 191.72 432870 773320 6442.5 869550 1362400 1113700 663970 485690 489370 383370 696700 403090 721950 54910 883940 1289100 1105400 704610 522450 512850 378630 665670 3 3 3 3 3 3 3 3 3 3 3 432870 773320 6442.5 869550 1362400 1113700 663970 485690 489370 383370 696700 403090 721950 54910 883940 1289100 1105400 704610 522450 512850 378630 665670 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 221100000 221100000 0 7965 1724 7427 42373;42374;42375;42376 50976;50977;50978 50977 3 HHNQPYCGIAPYIR Unmodified 1724.8205 0.82054285 560 P08621;P08621-2;P08621-3 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 4 2 3 3 30.247 30.307 3;4 6.1097E-20 9871 20211116_3439_TMUAki_TMT10x_S_F1 154.94 138.81 6112700 10210000 8766.7 11327000 13113000 12460000 7984500 6609900 7066500 6150900 7939000 5691200 9531400 569690 11494000 12442000 12492000 8338800 7001900 7260100 6026200 7631500 6 6 4 6 6 6 6 6 6 6 6 5405100 9083900 7070.3 9974700 12427000 11937000 7295600 6041100 6453900 5609700 7011100 5032400 8479500 509740 10142000 11784000 11908000 7642400 6426800 6622400 5496500 6746100 5 5 3 5 5 5 5 5 5 5 5 707590 1126400 1696.4 1352400 686140 522130 688950 568770 612580 541140 927930 658850 1051900 59945 1351300 658070 584170 696320 575100 637730 529640 885380 1 1 1 1 1 1 1 1 1 1 1 1624600000 1065000000 559630000 7966 560 7428 42377;42378;42379;42380;42381;42382 50979;50980;50981;50982;50983;50984;50985 50985 7 HHPDLIFCR Unmodified 1193.5764 0.5763964 2069 Q7RTV0 PHF5A PHD finger-like domain-containing protein 5A yes yes 0 0 0 0 By MS/MS 5 0 1 1 31.746 31.888 3 0.031734 6334 20211116_3444_TMUAki_TMT10x_S_F5 48.423 32.27 101380 166350 6830.4 183170 96939 77984 120260 84705 77597 92156 113530 94446 155280 14709 184100 93950 86084 119440 86006 82083 89697 108400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 101380 166350 6830.4 183170 96939 77984 120260 84705 77597 92156 113530 94446 155280 14709 184100 93950 86084 119440 86006 82083 89697 108400 1 1 1 1 1 1 1 1 1 1 1 1799800 0 1799800 7967 2069 7429 42383 50986 50986 1 HHPEDVEPALRK Unmodified 1426.7317 0.73171107 669 P14550 AKR1A1 Alcohol dehydrogenase [NADP(+)] yes yes 0 0 0 1 By MS/MS 4 0 1 1 29.792 29.831 4 0.00018737 6345 20211116_3431_TMUAki_TMT10x_P_F4 86.911 72.653 619120 965930 13458 884550 962660 1098300 671310 569380 616390 578850 782460 576570 901010 68684 911330 916530 1093800 694470 605890 635370 564950 749670 2 2 2 2 2 2 2 2 2 2 2 619120 965930 13458 884550 962660 1098300 671310 569380 616390 578850 782460 576570 901010 68684 911330 916530 1093800 694470 605890 635370 564950 749670 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24286000 24286000 0 7968 669 7430 42384 50987;50988 50988 2 HHPLHDFILELYQTGSTEPVEVPPELCHGIQGK Unmodified 3776.8621 0.8620799 2772 Q9H0D6;Q9H0D6-2 XRN2 5'-3' exoribonuclease 2 yes no 0 0 0 0 By MS/MS By MS/MS 6.26 1.86 1 1 1 6 5 5 9 10 95.258 95.212 5;6;7 2.1888E-21 32216 20211116_3445_TMUAki_TMT10x_S_F6 136.01 129.35 4283400 7214300 54609 5860900 4844200 6741500 5324600 4957700 5080600 5257900 5438800 3988500 6726600 335900 6087800 4658600 6773300 5368300 5139600 5192000 5122800 5235600 37 37 17 37 37 37 37 37 37 37 37 1968600 3200300 17130 2669800 1863600 4007300 2300400 2245800 2319400 2475100 2461700 1833000 2984200 152770 2781100 1797900 3960300 2311200 2379100 2363800 2407900 2370300 15 15 6 15 15 15 15 15 15 15 15 2314800 4014000 37479 3191100 2980600 2734200 3024200 2711800 2761200 2782800 2977100 2155500 3742400 183130 3306700 2860700 2813100 3057200 2760500 2828200 2714900 2865200 22 22 11 22 22 22 22 22 22 22 22 282960000 141800000 141160000 7969 2772 7431 42385;42386;42387;42388;42389;42390;42391;42392;42393;42394;42395;42396;42397;42398;42399;42400;42401;42402;42403 50989;50990;50991;50992;50993;50994;50995;50996;50997;50998;50999;51000;51001;51002;51003;51004;51005;51006;51007;51008;51009;51010;51011;51012;51013;51014;51015;51016;51017;51018;51019;51020;51021;51022;51023;51024;51025 51015 37 HIADLAGNPDLILPVPAFNVINGGSHAGNK Unmodified 3020.5832 0.58320292 661 P13929;P13929-3 ENO3 Beta-enolase yes no 0 0 0 0 By matching By MS/MS 1 0 2 1 1 76.656 76.624 4 3.7111E-07 26858 20211116_3439_TMUAki_TMT10x_S_F1 80.729 68.051 12021000 20383000 64961 19398000 14749000 13812000 15938000 10244000 9420700 10567000 14377000 11193000 19016000 1095300 19775000 14176000 14335000 15903000 10605000 10045000 10307000 13715000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12021000 20383000 64961 19398000 14749000 13812000 15938000 10244000 9420700 10567000 14377000 11193000 19016000 1095300 19775000 14176000 14335000 15903000 10605000 10045000 10307000 13715000 2 2 2 2 2 2 2 2 2 2 2 4049600000 2052700000 1996900000 7970 661 7432 42404;42405 51026;51027 51026 2 HIADLAGNSEVILPVPAFNVINGGSHAGNK Unmodified 3010.5625 0.56246748 520 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 0 By MS/MS By MS/MS 5.18 2.95 7 4 2 1 8 11 15 18 75.369 75.363 3;4;5 3.3958E-57 24828 20211116_3439_TMUAki_TMT10x_S_F1 208.26 190.67 329780000 545980000 2495100 507310000 329900000 424450000 376360000 256310000 235430000 281050000 359830000 307050000 509310000 22686000 519030000 317460000 433730000 374970000 269830000 250090000 273470000 343260000 73 73 40 73 73 73 73 73 73 73 73 149420000 244350000 1692900 227740000 132230000 249260000 168940000 119450000 114220000 126180000 161850000 139130000 227940000 12436000 233830000 127750000 249690000 167740000 128200000 120280000 122960000 154650000 29 29 16 29 29 29 29 29 29 29 29 180360000 301630000 802230 279570000 197670000 175190000 207430000 136860000 121210000 154870000 197980000 167920000 281370000 10250000 285210000 189710000 184050000 207220000 141630000 129810000 150510000 188610000 44 44 24 44 44 44 44 44 44 44 44 224610000000 125890000000 98719000000 7971 520 7433 42406;42407;42408;42409;42410;42411;42412;42413;42414;42415;42416;42417;42418;42419;42420;42421;42422;42423;42424;42425;42426;42427;42428;42429;42430;42431;42432;42433;42434;42435;42436;42437;42438 51028;51029;51030;51031;51032;51033;51034;51035;51036;51037;51038;51039;51040;51041;51042;51043;51044;51045;51046;51047;51048;51049;51050;51051;51052;51053;51054;51055;51056;51057;51058;51059;51060;51061;51062;51063;51064;51065;51066;51067;51068;51069;51070;51071;51072;51073;51074;51075;51076;51077;51078;51079;51080;51081;51082;51083;51084;51085;51086;51087;51088;51089;51090;51091;51092;51093;51094;51095;51096;51097;51098;51099;51100 51064 73 HIAEEADRKYEEVAR Unmodified 1814.8911 0.89112484 526;527;525;1413 P06753-2;P06753-3;P06753-5;P06753-4;P06753-7;P06753-6;P06753;P67936;P67936-2 TPM3;TPM4 Tropomyosin alpha-3 chain;Tropomyosin alpha-4 chain no no 0 0 0 2 By MS/MS By MS/MS 3.88 1.05 1 2 2 3 4 4 37.206 37.157 4;5 1.0863E-29 9138 20211116_3431_TMUAki_TMT10x_P_F4 204.52 178.52 + 4601500 7373300 83045 9567500 11251000 8330300 5312200 7566600 8385800 5869500 7722100 4284900 6888300 536680 9587000 10642000 8545500 5794000 7681000 8373100 5802400 7469800 8 8 5 8 8 8 8 8 8 8 8 2196000 3345400 50778 4563500 8900800 6232000 3198900 3722700 4185600 2953000 3531500 2045100 3126200 317000 4594400 8393800 6189400 3573400 3888600 4191800 2915700 3427000 3 3 2 3 3 3 3 3 3 3 3 2405400 4027900 32267 5004000 2350000 2098300 2113300 3844000 4200200 2916500 4190600 2239900 3762100 219680 4992500 2248700 2356100 2220600 3792400 4181300 2886600 4042800 5 5 3 5 5 5 5 5 5 5 5 1053000000 773090000 279940000 7972 526;527;525;1413 7434 42439;42440;42441;42442;42443;42444;42445;42446 51101;51102;51103;51104;51105;51106;51107;51108 51101 8 HIAEVSQEVTR Unmodified 1267.6521 0.65206377 1319 P61764;P61764-2 STXBP1 Syntaxin-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.25 0.433 3 1 1 3 44.055 43.935 3 9.0115E-06 9562 20211116_3441_TMUAki_TMT10x_S_F3 108.35 93.658 6496900 9952900 368000 13635000 10131000 10039000 8100200 7849000 6829800 6434100 8376300 6052000 9300900 932510 13596000 9685600 10399000 8283300 8048500 7058600 6342200 8032500 4 4 4 4 4 4 4 4 4 4 4 3816800 5475100 293300 8169700 7387800 8341300 5544000 5520700 4878500 4569700 5017100 3556000 5118900 639790 8146700 7055100 8423600 5699300 5727000 4997000 4502200 4835500 1 1 1 1 1 1 1 1 1 1 1 2680100 4477800 74705 5465000 2743600 1697400 2556200 2328300 1951300 1864400 3359300 2496000 4182000 292710 5449100 2630500 1975800 2583900 2321500 2061600 1840000 3197000 3 3 3 3 3 3 3 3 3 3 3 2015600000 513830000 1501700000 7973 1319 7435 42447;42448;42449;42450 51109;51110;51111 51109 3 HIANYISGIQTIGHR Unmodified 1678.8903 0.89033698 1798 Q15393;Q15393-3 SF3B3 Splicing factor 3B subunit 3 yes no 0 0 0 0 By MS/MS By MS/MS 3.12 1.54 3 4 1 3 5 44.271 44.221 3;4 6.2318E-30 13578 20211116_3430_TMUAki_TMT10x_P_F3 201.06 154.9 8737200 14318000 582870 16395000 13540000 15902000 10282000 12941000 12520000 11657000 13228000 8139300 13368000 1312500 16572000 12934000 16164000 10669000 13268000 12664000 11438000 12739000 9 9 7 9 9 9 9 9 9 9 9 4468100 6879300 326520 8162300 9453900 11733000 6502500 6787700 6628400 6081700 6866900 4162500 6423900 722220 8289700 9008900 11621000 6754000 7129700 6746200 5968800 6616800 4 4 2 4 4 4 4 4 4 4 4 4269100 7439100 256350 8233100 4085900 4169300 3779000 6152800 5891600 5575800 6361400 3976800 6944400 590280 8282200 3925500 4542700 3914700 6138400 5917900 5469400 6122000 5 5 5 5 5 5 5 5 5 5 5 2239300000 1293000000 946370000 7974 1798 7436 42451;42452;42453;42454;42455;42456;42457;42458 51112;51113;51114;51115;51116;51117;51118;51119;51120;51121 51114 10 HIAQLAGNSDLILPVPAFNVINGGSHAGNK Unmodified 3023.5941 0.59410196 568 P09104;P09104-2 ENO2 Gamma-enolase yes no 0 0 0 0 By MS/MS By MS/MS 2.44 0.685 1 3 5 5 4 72.201 71.964 3;4;5 2.3188E-35 25094 20211116_3430_TMUAki_TMT10x_P_F3 166.35 154.56 34917000 59407000 511310 57032000 38275000 60654000 41751000 39744000 32854000 39178000 44422000 32514000 55424000 3219300 58404000 36805000 61097000 41893000 41447000 34223000 38287000 42495000 15 15 11 15 15 15 15 15 15 15 15 20847000 35815000 426920 34475000 20866000 43672000 23655000 24511000 18923000 24593000 26295000 19413000 33414000 2112700 35403000 20103000 43492000 23702000 25890000 19720000 24015000 25137000 10 10 9 10 10 10 10 10 10 10 10 14071000 23592000 84388 22557000 17409000 16982000 18096000 15233000 13931000 14586000 18128000 13100000 22010000 1106600 23001000 16703000 17605000 18191000 15557000 14503000 14272000 17357000 5 5 2 5 5 5 5 5 5 5 5 21179000000 11307000000 9872800000 7975 568 7437 42459;42460;42461;42462;42463;42464;42465;42466;42467 51122;51123;51124;51125;51126;51127;51128;51129;51130;51131;51132;51133;51134;51135;51136 51130 15 HIAVLQAEVYGAR Unmodified 1425.7728 0.7728476 2874 Q9HD26;Q9HD26-2;Q9HD26-3 GOPC Golgi-associated PDZ and coiled-coil motif-containing protein yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 44.055 44.455 3 2.8636E-15 11518 20211116_3445_TMUAki_TMT10x_S_F6 175.54 151.07 3832900 6168400 70654 6873600 6241900 7417400 4661700 6362400 5793000 5170400 5790700 3569400 5758400 417360 6970500 5949600 7499100 4846200 6486400 5843800 5098800 5586100 4 4 4 4 4 4 4 4 4 4 4 2578500 3927100 38958 4466100 4939100 6196600 3493900 4201100 3835200 3441100 3817400 2401100 3666400 283140 4544000 4701900 6161100 3630200 4349300 3886100 3392000 3683000 2 2 2 2 2 2 2 2 2 2 2 1254400 2241300 31696 2407500 1302800 1220700 1167800 2161400 1957800 1729400 1973300 1168200 2092000 134220 2426600 1247700 1337900 1216000 2137100 1957700 1706800 1903100 2 2 2 2 2 2 2 2 2 2 2 674140000 359900000 314240000 7976 2874 7438 42468;42469;42470;42471 51137;51138;51139;51140;51141 51140 5 HIDALEDKIDEEVRR Unmodified 1836.933 0.93298965 1130 P49959;P49959-2;P49959-3 MRE11A Double-strand break repair protein MRE11A yes no 0 0 0 2 By MS/MS 2.8 0.748 2 2 1 5 48.723 48.571 4;5 2.2486E-19 16544 20211116_3441_TMUAki_TMT10x_S_F3 172.26 149.12 3134400 5283100 27051 5759700 2781800 2583700 2624100 5334100 5058600 4345100 5023900 2918600 4931500 278470 5794700 2664900 2889800 2745300 5254900 5038500 4284400 4847500 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3134400 5283100 27051 5759700 2781800 2583700 2624100 5334100 5058600 4345100 5023900 2918600 4931500 278470 5794700 2664900 2889800 2745300 5254900 5038500 4284400 4847500 3 3 2 3 3 3 3 3 3 3 3 619840000 0 619840000 7977 1130 7439 42472;42473;42474;42475;42476 51142;51143;51144 51142 3 HIDCAAIYGNEPEIGEALKEDVGPGK Unmodified 2781.328 0.32795902 669 P14550 AKR1A1 Alcohol dehydrogenase [NADP(+)] yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 63.313 63.074 4 3.844E-17 20976 20211116_3429_TMUAki_TMT10x_P_F2 124 117.89 21251000 36903000 257870 33058000 29632000 31910000 26741000 25643000 20925000 23405000 27480000 19788000 34420000 2014600 33979000 28349000 32438000 27096000 26321000 21774000 22950000 26306000 6 6 3 6 6 6 6 6 6 6 6 7426000 13523000 195900 12233000 11150000 17720000 11423000 9649700 8428500 9340300 9792400 6915300 12613000 797100 12653000 10707000 17532000 11480000 10209000 8754000 9135000 9404200 3 3 2 3 3 3 3 3 3 3 3 13825000 23380000 61965 20825000 18482000 14191000 15318000 15993000 12496000 14064000 17687000 12873000 21807000 1217500 21326000 17642000 14906000 15616000 16112000 13020000 13815000 16902000 3 3 1 3 3 3 3 3 3 3 3 4661600000 2755400000 1906200000 7978 669 7440 42477;42478;42479 51145;51146;51147;51148;51149;51150 51145 6 HIDCAHVYQNENEVGVAIQEK Unmodified 2452.1441 0.14412141 680 P15121 AKR1B1 Aldose reductase yes yes 0 0 0 0 By MS/MS By MS/MS 3.63 1.46 2 2 5 4 4 2 11 8 45.056 45.057 3;4;5 1.2829E-44 13842 20211116_3430_TMUAki_TMT10x_P_F3 209.9 199.04 86290000 163240000 1004000 184580000 159130000 192010000 114120000 128940000 124410000 102560000 130440000 80345000 152400000 8186000 186910000 151460000 193730000 118430000 133500000 126330000 101260000 125640000 31 31 20 31 31 31 31 31 31 31 31 58875000 112280000 744950 124130000 133870000 167700000 89742000 89821000 85944000 69515000 88518000 54818000 104810000 5796200 126450000 127250000 166410000 93218000 94646000 87691000 68729000 85310000 21 21 14 21 21 21 21 21 21 21 21 27415000 50967000 259040 60452000 25267000 24310000 24376000 39124000 38465000 33049000 41919000 25527000 47593000 2389800 60461000 24214000 27327000 25208000 38849000 38638000 32528000 40331000 10 10 6 10 10 10 10 10 10 10 10 23953000000 14382000000 9570500000 7979 680 7441 42480;42481;42482;42483;42484;42485;42486;42487;42488;42489;42490;42491;42492;42493;42494;42495;42496;42497;42498 51151;51152;51153;51154;51155;51156;51157;51158;51159;51160;51161;51162;51163;51164;51165;51166;51167;51168;51169;51170;51171;51172;51173;51174;51175;51176;51177;51178;51179;51180;51181;51182 51161 32 HIDFSLR Unmodified 886.4661 0.4661009 1054 P46781 RPS9 40S ribosomal protein S9 yes yes 0 0 0 0 By MS/MS By MS/MS 5.18 1.11 1 2 3 4 1 6 5 41.02 41.223 2;3 0.00043461 10049 20211116_3444_TMUAki_TMT10x_S_F5 186.67 82.563 6266400 9377300 11825 10999000 8285100 7162400 6424100 6612100 6441800 6153800 7858500 5834500 8756100 525360 11049000 7895900 7520900 6614100 6736800 6603000 6029000 7536900 7 7 3 7 7 7 7 7 7 7 7 1962800 2770600 570.7 3251700 4136400 3464900 2105900 1975200 1924500 1822800 2339800 1827500 2587100 181830 3286500 3914400 3483200 2236600 2078900 1980500 1786500 2244200 2 2 1 2 2 2 2 2 2 2 2 4303600 6606700 11255 7747800 4148700 3697500 4318200 4636900 4517400 4331000 5518700 4007000 6169000 343530 7762900 3981500 4037700 4377500 4657900 4622500 4242500 5292700 5 5 2 5 5 5 5 5 5 5 5 3643400000 1799700000 1843700000 7980 1054 7442 42499;42500;42501;42502;42503;42504;42505;42506;42507;42508;42509 51183;51184;51185;51186;51187;51188;51189;51190;51191;51192;51193;51194 51191 12 HIDIHPENTHILDGNAVDLQAECDAFEEK Unmodified 3329.5259 0.52588356 1058 P46926 GNPDA1 Glucosamine-6-phosphate isomerase 1 yes yes 0 0 0 0 By MS/MS By matching 2.25 0.829 1 1 2 3 1 62.437 62.188 5 9.6617E-34 20539 20211116_3429_TMUAki_TMT10x_P_F2 170.82 154.15 8644600 13881000 0 11862000 8891000 17463000 10276000 8005500 7523500 7472500 10759000 8048600 12945000 175890 12328000 8556600 17233000 10266000 8600800 7889100 7319900 10278000 2 2 0 2 2 2 2 2 2 2 2 8644600 13881000 0 11862000 8891000 17463000 10276000 8005500 7523500 7472500 10759000 8048600 12945000 175890 12328000 8556600 17233000 10266000 8600800 7889100 7319900 10278000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4855600000 4297200000 558380000 7981 1058 7443 42510;42511;42512;42513 51195;51196 51196 2 HIDLQFSYAPR Unmodified 1345.6779 0.67788459 2106 Q86UK7;Q86UK7-2;Q86UK7-3 ZNF598 Zinc finger protein 598 yes no 0 0 0 0 By MS/MS 8 0 1 1 50.21 50.11 3 0.10664 13673 20211116_3447_TMUAki_TMT10x_S_F8 35.006 17.275 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7982 2106 7444 42514 51197 51197 1 HIDLVEGDEGR Unmodified 1238.5891 0.58912916 730 P19367;P19367-4;P19367-2;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 By MS/MS 1 0 1 1 34.884 34.873 3 0.099053 9879 20211116_3439_TMUAki_TMT10x_S_F1 36.679 15.808 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7983 730 7445 42515 51198 51198 1 HIEEVRK Unmodified 909.50321 0.50321468 698 P16949 STMN1 Stathmin yes yes 0 0 0 1 By MS/MS By MS/MS 3.78 0.786 1 1 6 1 8 1 26.032 25.943 3 0.005192 5757 20211116_3433_TMUAki_TMT10x_P_F5 89.55 15.135 1045400 1490200 13616 1539600 901600 1077100 820550 412610 531800 504130 875970 973490 1390700 95692 1560200 863180 1110900 827620 455790 565860 488590 834360 3 3 2 3 3 3 3 3 3 3 3 1045400 1490200 13616 1539600 901600 1077100 820550 412610 531800 504130 875970 973490 1390700 95692 1560200 863180 1110900 827620 455790 565860 488590 834360 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19557000 19557000 0 7984 698 7446 42516;42517;42518;42519;42520;42521;42522;42523;42524 51199;51200;51201;51202;51203;51204;51205;51206;51207;51208 51207 10 HIEIFTDLSSR Unmodified 1316.6725 0.67246486 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 1.03 2 3 4 3 7 5 51.452 51.531 2;3 1.1862E-15 15003 20211116_3431_TMUAki_TMT10x_P_F4 202.2 174.9 32891000 51812000 325880 57060000 45255000 53333000 36869000 44536000 40234000 41150000 44722000 30626000 48365000 3073900 57784000 43193000 54365000 37940000 45624000 40943000 40329000 43002000 11 11 6 11 11 11 11 11 11 11 11 17476000 26777000 138370 29895000 31230000 40789000 23302000 24640000 22118000 22403000 23933000 16272000 24998000 1658700 30440000 29746000 40518000 24014000 25800000 22617000 21972000 23031000 7 7 3 7 7 7 7 7 7 7 7 15415000 25034000 187510 27165000 14026000 12545000 13567000 19896000 18116000 18747000 20788000 14354000 23367000 1415200 27344000 13447000 13847000 13927000 19824000 18326000 18357000 19971000 4 4 3 4 4 4 4 4 4 4 4 9826300000 5717700000 4108600000 7985 648 7447 42525;42526;42527;42528;42529;42530;42531;42532;42533;42534;42535;42536 51209;51210;51211;51212;51213;51214;51215;51216;51217;51218;51219;51220 51212 12 HIEVEVR Unmodified 880.47667 0.47666558 2832 Q9H8H0 NOL11 Nucleolar protein 11 yes yes 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 31.039 30.799 3 0.030839 9365 20211116_3441_TMUAki_TMT10x_S_F3 58.286 11.86 1060600 1496800 1178.6 1343400 1020600 1384200 1046100 703330 787570 850650 996740 987490 1396100 88467 1381900 979340 1392300 1051800 753870 819960 824720 955040 2 2 2 2 2 2 2 2 2 2 2 699550 978930 1118.1 871200 691520 998310 671400 461680 525220 548260 633650 651360 913040 58927 898270 662620 997110 677560 499080 544560 531890 607900 1 1 1 1 1 1 1 1 1 1 1 361010 517860 60.437 472220 329120 385900 374730 241650 262360 302400 363090 336140 483050 29540 483670 316720 395210 374250 254790 275390 292840 347140 1 1 1 1 1 1 1 1 1 1 1 51810000 15875000 35935000 7986 2832 7448 42537;42538;42539 51221;51222;51223 51223 3 HIEVEVRK Unmodified 1008.5716 0.5716286 2832 Q9H8H0 NOL11 Nucleolar protein 11 yes yes 0 0 0 1 By MS/MS 4.67 0.471 1 2 3 31.951 31.921 3;4 0.0029062 7428 20211116_3433_TMUAki_TMT10x_P_F5 90.657 65.098 1093100 1709900 16915 1703300 1568800 1981000 1248200 1149200 1226100 1178200 1398300 1017900 1595500 113050 1742200 1497200 1982200 1282200 1211300 1254400 1149500 1343600 2 2 2 2 2 2 2 2 2 2 2 1093100 1709900 16915 1703300 1568800 1981000 1248200 1149200 1226100 1178200 1398300 1017900 1595500 113050 1742200 1497200 1982200 1282200 1211300 1254400 1149500 1343600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 104410000 104410000 0 7987 2832 7449 42540;42541;42542 51224;51225 51224 2 HIEVQVAQETR Unmodified 1308.6786 0.67861287 261 O60271;O60271-2;O60271-9;O60271-4;O60271-5;O60271-3 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 yes no 0 0 0 0 By MS/MS By MS/MS 2.25 0.829 1 1 2 3 1 32.295 32.171 3 9.6855E-07 8356 20211116_3429_TMUAki_TMT10x_P_F2 126.48 105.39 556220 919930 13741 934060 912970 913940 662770 611720 678140 613750 785970 518000 858440 63917 951600 869940 925510 685840 637270 693040 599330 754860 3 3 3 3 3 3 3 3 3 3 3 385460 617990 9601.9 622870 730320 741220 471920 429940 479390 416470 574710 358970 576670 45736 636860 694350 740810 492430 452440 490750 407300 551450 2 2 2 2 2 2 2 2 2 2 2 170760 301930 4139.4 311190 182650 172720 190850 181780 198750 197280 211260 159030 281770 18182 314740 175590 184700 193410 184830 202290 192030 203410 1 1 1 1 1 1 1 1 1 1 1 131870000 48957000 82912000 7988 261 7450 42543;42544;42545;42546 51226;51227;51228 51226 3 HIEWESVLTNTAGCLR Unmodified 1884.9152 0.9152311 284 O60716;O60716-3;O60716-2;O60716-6;O60716-5;O60716-7;O60716-9;O60716-8;O60716-10;O60716-12;O60716-14;O60716-11;O60716-13;O60716-16;O60716-15;O60716-4;O60716-23;O60716-22;O60716-24;O60716-17;O60716-20;O60716-18;O60716-19;O60716-21;O60716-27;O60716-29;O60716-25;O60716-28;O60716-31;O60716-32;O60716-30;O60716-26 CTNND1 Catenin delta-1 yes no 0 0 0 0 By MS/MS 7 0 1 1 64.254 64.897 3 0.0078025 21391 20211116_3435_TMUAki_TMT10x_P_F7 56.473 42.496 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7989 284 7451 42547 51229 51229 1 HIFALFNTEQR Unmodified 1374.7044 0.70443369 1518 Q05193;Q05193-5;Q05193-3;Q05193-2 DNM1 Dynamin-1 no no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 54.535 54.339 3 0.00015485 16103 20211116_3440_TMUAki_TMT10x_S_F2 91.701 78.746 908210 1591900 52483 1708200 881410 1108400 917580 1339000 1185300 1199600 1351300 846020 1485800 123830 1725400 849220 1171400 937140 1345600 1200000 1177400 1298400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 908210 1591900 52483 1708200 881410 1108400 917580 1339000 1185300 1199600 1351300 846020 1485800 123830 1725400 849220 1171400 937140 1345600 1200000 1177400 1298400 1 1 1 1 1 1 1 1 1 1 1 291550000 0 291550000 7990 1518 7452 42548;42549 51230;51231 51231 2 HIFPASR Unmodified 826.44497 0.44497152 1705 Q14320;Q9Y247 FAM50A;FAM50B Protein FAM50A;Protein FAM50B yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 30.174 30.207 3 0.052055 7992 20211116_3439_TMUAki_TMT10x_S_F1 45.394 16.035 342340 509680 1620.1 582180 440590 385120 375080 225200 268710 288210 353180 318750 475850 29206 585850 420780 400900 380600 238930 281020 278880 338080 2 2 1 2 2 2 2 2 2 2 2 149440 229090 0 259270 263080 246820 154850 113700 132640 120400 147630 139130 213870 11918 262180 249400 249220 162040 122520 136440 117320 141950 1 1 0 1 1 1 1 1 1 1 1 192900 280590 1620.1 322900 177510 138310 220240 111500 136070 167810 205550 179620 261980 17287 323660 171380 151680 218560 116400 144570 161570 196140 1 1 1 1 1 1 1 1 1 1 1 19314000 6507400 12806000 7991 1705 7453 42550;42551 51232;51233 51233 2 HIGGPESEPPQALRPR Unmodified 1739.9067 0.90671532 2550 Q96S66;Q96S66-4;Q96S66-3;Q96S66-2 CLCC1 Chloride channel CLIC-like protein 1 yes no 0 0 0 1 By MS/MS 5 0 1 1 31.754 31.694 4 0.024136 7366 20211116_3433_TMUAki_TMT10x_P_F5 45.084 34.029 2151700 3404500 294950 3104100 2263500 3765500 2431600 1936100 1885400 1809300 2479500 2005600 3175700 454840 3197800 2192400 3754200 2440800 2057000 1963100 1772300 2373500 1 1 1 1 1 1 1 1 1 1 1 2151700 3404500 294950 3104100 2263500 3765500 2431600 1936100 1885400 1809300 2479500 2005600 3175700 454840 3197800 2192400 3754200 2440800 2057000 1963100 1772300 2373500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14924000 14924000 0 7992 2550 7454 42552 51234 51234 1 HIIEDPCTLR Unmodified 1252.6234 0.62340617 2092 Q7Z6Z7;Q7Z6Z7-2;Q7Z6Z7-3 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 35.716 35.608 3 0.0030061 8675 20211116_3431_TMUAki_TMT10x_P_F4 71.03 43.701 1422800 2379000 20107 2483100 2470100 2296200 1652000 1992900 2074800 1789100 2153300 1324800 2220300 145010 2523000 2348600 2343900 1731600 2035500 2095000 1755800 2074800 2 2 1 2 2 2 2 2 2 2 2 800460 1208900 0 1326500 1846100 1668600 984720 889830 915580 798460 1085600 745250 1128500 74654 1350100 1748100 1661300 1041700 941290 940500 783580 1042000 1 1 0 1 1 1 1 1 1 1 1 622300 1170100 20107 1156600 623920 627560 667280 1103100 1159200 990680 1067700 579570 1091800 70355 1172900 600550 682640 689820 1094200 1154500 972180 1032800 1 1 1 1 1 1 1 1 1 1 1 123800000 101320000 22486000 7993 2092 7455 42553;42554 51235;51236 51235 2 HIIENAKQDVDDEYGVSQALAR Unmodified 2470.2088 0.20883016 1154 P51532-5;P51532-2;P51532-3;P51532-4;P51532 SMARCA4 Transcription activator BRG1 yes no 0 0 0 1 By MS/MS 6 0 1 1 54.757 54.846 4 4.9647E-15 15830 20211116_3445_TMUAki_TMT10x_S_F6 139.7 120.11 5083200 8501600 73600 8441100 5288800 4854800 4675000 6024100 5793100 5714700 6619000 4733600 7932700 492910 8561900 5060200 5193200 4808700 6056600 5873900 5594100 6359600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5083200 8501600 73600 8441100 5288800 4854800 4675000 6024100 5793100 5714700 6619000 4733600 7932700 492910 8561900 5060200 5193200 4808700 6056600 5873900 5594100 6359600 2 2 2 2 2 2 2 2 2 2 2 584290000 0 584290000 7994 1154 7456 42555 51237;51238 51238 2 HILANFK Unmodified 841.48102 0.48102268 656 P13693;P13693-2;Q56UQ5 TPT1 Translationally-controlled tumor protein;TPT1-like protein yes no 0 0 0 0 By MS/MS 2 0 1 1 40.842 40.899 3 0.0065582 10521 20211116_3440_TMUAki_TMT10x_S_F2 84.359 14.926 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7995 656 7457 42556 51239 51239 1 HILGFDTGDAVLNEAAQILR Unmodified 2152.1277 0.12766671 3220 Q9Y224 C14orf166 UPF0568 protein C14orf166 yes yes 0 0 0 0 By MS/MS By MS/MS 6.4 0.8 1 1 3 3 2 79.397 79.416 3 6.2194E-59 28016 20211116_3446_TMUAki_TMT10x_S_F7 246.69 217.82 6032000 10101000 25258 9252000 7970100 8485200 8081800 5973000 6342500 6513500 8250600 5616200 9422100 503950 9487100 7643400 8635000 8138000 6215900 6596200 6339100 7900000 3 3 1 3 3 3 3 3 3 3 3 1837700 3474900 25258 3103400 1843000 3600300 2477300 1922900 1938500 2242300 2550300 1711300 3241100 175970 3199700 1784600 3599400 2462900 2049300 2017400 2176700 2441200 1 1 1 1 1 1 1 1 1 1 1 4194300 6626000 0 6148600 6127100 4884900 5604500 4050100 4404000 4271200 5700400 3904900 6181000 327980 6287400 5858800 5035600 5675100 4166600 4578800 4162400 5458800 2 2 0 2 2 2 2 2 2 2 2 2549100000 1346600000 1202500000 7996 3220 7458 42557;42558;42559;42560;42561 51240;51241;51242;51243;51244 51243 5 HILILQNK Unmodified 977.6022 0.60220045 993 P41091;Q2VIR3;Q2VIR3-2 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 42.566 42.458 3 0.00025536 12560 20211116_3429_TMUAki_TMT10x_P_F2 135.87 88.798 4165700 6203100 100910 7631700 6661900 5894100 4510700 3752200 3795500 3696700 5397000 3879400 5793500 474370 7658700 6339800 6063600 4665800 3921400 3949400 3612600 5156700 4 4 4 4 4 4 4 4 4 4 4 2660200 3725400 62100 4739500 5510700 4712000 3025300 2285800 2366500 2368100 3462700 2477400 3480000 318350 4763000 5225200 4747400 3178200 2449000 2475300 2309400 3306400 2 2 2 2 2 2 2 2 2 2 2 1505500 2477600 38811 2892200 1151200 1182200 1485500 1466300 1429000 1328600 1934300 1402100 2313500 156030 2895700 1114600 1316200 1487500 1472400 1474100 1303300 1850300 2 2 2 2 2 2 2 2 2 2 2 496920000 357350000 139580000 7997 993 7459 42562;42563;42564;42565 51245;51246;51247;51248 51246 4 HILLAVANDEELNQLLK Unmodified 1932.068 0.068026571 3051;327 Q9P0M6;O75367;O75367-2;O75367-3 H2AFY2;H2AFY Core histone macro-H2A.2;Core histone macro-H2A.1 no no 0 0 0 0 By MS/MS By MS/MS 5.28 2.38 4 1 2 2 5 4 4 7 15 14 74.481 74.481 2;3;4 2.1495E-137 24200 20211116_3444_TMUAki_TMT10x_S_F5 364.2 324.57 175170000 285550000 3127800 262910000 200270000 269680000 218190000 190200000 187440000 188280000 213220000 163120000 266360000 16471000 269920000 192620000 272520000 219430000 197330000 192950000 183960000 204880000 33 33 22 33 33 33 33 33 33 33 33 95704000 151210000 1974100 136330000 93245000 173350000 112420000 100930000 101910000 101900000 112210000 89120000 141040000 9111300 140680000 89968000 172690000 112700000 106300000 104510000 99479000 107920000 17 17 12 17 17 17 17 17 17 17 17 79467000 134340000 1153700 126580000 107030000 96322000 105770000 89267000 85529000 86383000 101010000 73999000 125320000 7360000 129230000 102650000 99834000 106720000 91031000 88446000 84485000 96962000 16 16 10 16 16 16 16 16 16 16 16 45572000000 20813000000 24759000000 7998 3051;327 7460 42566;42567;42568;42569;42570;42571;42572;42573;42574;42575;42576;42577;42578;42579;42580;42581;42582;42583;42584;42585;42586;42587;42588;42589;42590;42591;42592;42593;42594 51249;51250;51251;51252;51253;51254;51255;51256;51257;51258;51259;51260;51261;51262;51263;51264;51265;51266;51267;51268;51269;51270;51271;51272;51273;51274;51275;51276;51277;51278;51279;51280;51281;51282;51283;51284;51285;51286;51287 51278 39 HILLYGPPGTGK Unmodified 1251.6976 0.69755739 1941 Q5T9A4;Q5T9A4-3 ATAD3B ATPase family AAA domain-containing protein 3B no no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 47.016 46.846 3 0.00016746 13039 20211116_3440_TMUAki_TMT10x_S_F2 87.001 61.062 5831500 9575400 125920 10255000 9249200 9978500 7218400 7854800 7072700 6469100 7920900 5430600 8937400 648690 10410000 8825100 10135000 7423600 8051900 7231700 6375100 7614700 3 3 3 3 3 3 3 3 3 3 3 4004300 6212100 60229 6755500 7570500 8591700 5898600 5610500 5051900 4623000 5380500 3728800 5798600 438060 6880800 7220500 8572400 6044400 5825200 5188200 4555800 5180200 2 2 2 2 2 2 2 2 2 2 2 1827200 3363300 65691 3499700 1678700 1386800 1319700 2244300 2020700 1846100 2540400 1701800 3138800 210630 3529000 1604600 1562400 1379100 2226700 2043500 1819400 2434600 1 1 1 1 1 1 1 1 1 1 1 164050000 123440000 40608000 7999 1941 7461 42595;42596 51288;51289;51290 51290 3 HIMGQNVADYMR 2 Oxidation (M) 1465.6442 0.64421797 1051 P46777 RPL5 60S ribosomal protein L5 yes yes 0 0 2 0 By MS/MS By MS/MS 4.83 1.57 1 1 2 1 1 3 3 30.348 30.417 3 0.0020262 6494 20211116_3431_TMUAki_TMT10x_P_F4 70.345 56.187 1796700 2891500 11457 3143600 4715100 3630300 2515400 1362200 1991700 1613000 2237200 1672800 2699000 184430 3196400 4465500 3617300 2650300 1506900 2057900 1565100 2150500 5 5 1 5 5 5 5 5 5 5 5 1729300 2792500 11457 3008600 4648900 3583500 2440800 1317100 1947600 1566000 2166500 1610100 2606500 182030 3062600 4402000 3564300 2576000 1460900 2010700 1519100 2083200 3 3 1 3 3 3 3 3 3 3 3 67342 99044 0 134970 66194 46743 74574 45095 44143 47088 70673 62687 92553 2400.6 133830 63558 53023 74264 45993 47181 45907 67354 2 2 0 2 2 2 2 2 2 2 2 577770000 562230000 15540000 8000 1051 7462 42597;42598;42599;42600;42601;42602 51291;51292;51293;51294;51295 51292 1353;1354 5 HIMGQNVADYMR Oxidation (M) 1449.6493 0.64930335 1051 P46777 RPL5 60S ribosomal protein L5 yes yes 0 0 1 0 By MS/MS By MS/MS 6.11 1.24 2 4 5 4 3 11 7 34.399 34.598 3 2.4487E-09 9264 20211116_3433_TMUAki_TMT10x_P_F5 151.98 137.72 7836500 12502000 125420 14560000 16669000 14165000 9972700 9294100 9550100 7807400 10952000 7297200 11673000 848130 14702000 15821000 14346000 10453000 9651000 9783800 7686300 10521000 26 26 19 26 26 26 26 26 26 26 26 5788000 9067200 91415 10487000 14788000 12677000 8325600 7104200 7269000 5769100 8128900 5389700 8465900 665210 10631000 14020000 12654000 8750100 7464400 7471700 5689400 7815000 15 15 12 15 15 15 15 15 15 15 15 2048500 3434400 34008 4073200 1881800 1488300 1647200 2189900 2281100 2038200 2823000 1907500 3207000 182920 4071600 1800300 1691400 1702700 2186600 2312100 1996900 2706500 11 11 7 11 11 11 11 11 11 11 11 1641000000 1410400000 230530000 8001 1051 7462 42603;42604;42605;42606;42607;42608;42609;42610;42611;42612;42613;42614;42615;42616;42617;42618;42619;42620 51296;51297;51298;51299;51300;51301;51302;51303;51304;51305;51306;51307;51308;51309;51310;51311;51312;51313;51314;51315;51316;51317;51318;51319;51320;51321;51322 51300 1353;1354 27 HIMGQNVADYMR Unmodified 1433.6544 0.65438873 1051 P46777 RPL5 60S ribosomal protein L5 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.756 2 3 2 4 3 42.772 43.053 2;3 1.0944E-14 12691 20211116_3435_TMUAki_TMT10x_P_F7 152.64 142.84 16067000 26659000 316330 27402000 22538000 24480000 19304000 15566000 16249000 15493000 20405000 14962000 24878000 1600200 27859000 21541000 24918000 19656000 16274000 16811000 15134000 19555000 7 7 6 7 7 7 7 7 7 7 7 9139500 14472000 162770 14749000 15425000 18282000 11869000 8820900 8872800 8560300 11496000 8510900 13505000 997450 15079000 14710000 18194000 12132000 9438200 9250700 8371200 11008000 3 3 3 3 3 3 3 3 3 3 3 6927700 12187000 153560 12654000 7113500 6197500 7435500 6744800 7375800 6932300 8909200 6450600 11374000 602800 12780000 6830500 6724200 7523500 6835700 7560700 6762700 8546900 4 4 3 4 4 4 4 4 4 4 4 1040700000 659190000 381540000 8002 1051 7462 42621;42622;42623;42624;42625;42626;42627 51323;51324;51325;51326;51327;51328;51329;51330;51331 51325 9 HIMIDLGTGNNNK Oxidation (M) 1441.6984 0.69836203 1449 P83876 TXNL4A Thioredoxin-like protein 4A yes yes 0 0 1 0 By MS/MS 6 0 1 1 40.844 41.008 3 0.0018506 10217 20211116_3445_TMUAki_TMT10x_S_F6 65.03 49.837 663700 1029000 0 1147600 573750 655590 623860 888690 1000400 941770 942250 617940 960590 49639 1155000 551130 703460 641840 893380 999210 917590 910750 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 663700 1029000 0 1147600 573750 655590 623860 888690 1000400 941770 942250 617940 960590 49639 1155000 551130 703460 641840 893380 999210 917590 910750 1 1 0 1 1 1 1 1 1 1 1 85864000 0 85864000 8003 1449 7463 42628 51332 51332 1954 1 HINDSAPEVR Unmodified 1136.5574 0.5574351 1672 Q14008;Q14008-2;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 28.169 27.909 3 0.066764 8303 20211116_3441_TMUAki_TMT10x_S_F3 37.327 24.29 192270 319900 2334.3 286660 266260 407740 210980 543380 477260 399950 351140 179030 298380 18329 296600 254000 410960 225140 541330 469400 396520 342630 2 2 1 2 2 2 2 2 2 2 2 98832 172740 0 147910 147920 276360 107210 275330 260240 208140 186820 92016 161090 8058.4 154570 140760 273590 115620 277970 255450 206050 182490 1 1 0 1 1 1 1 1 1 1 1 93436 147160 2334.3 138750 118340 131380 103770 268050 217020 191800 164320 87015 137290 10271 142040 113240 137370 109520 263360 213950 190470 160140 1 1 1 1 1 1 1 1 1 1 1 5561900 2047800 3514100 8004 1672 7464 42629;42630 51333;51334 51334 2 HINMDGTINVDDFK Oxidation (M) 1633.7406 0.74062078 352 O75643;O75643-2 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 0 0 1 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 51.024 51.176 3 0.0010662 15294 20211116_3442_TMUAki_TMT10x_S_F4 67.115 51.225 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8005 352 7465 42631;42632 51335;51336 51336 263 2 HIPGAAFFDIDQCSDR Unmodified 1847.8261 0.82608174 800 P25325;P25325-2 MPST 3-mercaptopyruvate sulfurtransferase yes no 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 59.842 59.903 3 2.2219E-29 17554 20211116_3444_TMUAki_TMT10x_S_F5 192.65 178.62 28656000 46444000 265100 46782000 37473000 47378000 34268000 35645000 31793000 33628000 38928000 26683000 43339000 2695100 47710000 35863000 47966000 34850000 36774000 32706000 32926000 37332000 9 9 7 9 9 9 9 9 9 9 9 16849000 27360000 148650 26675000 21376000 35468000 21842000 20568000 18152000 18869000 22226000 15689000 25527000 1547600 27393000 20514000 35255000 22017000 21613000 18772000 18498000 21314000 5 5 3 5 5 5 5 5 5 5 5 11807000 19084000 116450 20107000 16097000 11910000 12425000 15077000 13641000 14759000 16702000 10995000 17811000 1147500 20318000 15349000 12710000 12833000 15160000 13933000 14427000 16017000 4 4 4 4 4 4 4 4 4 4 4 5373000000 2544700000 2828300000 8006 800 7466 42633;42634;42635;42636;42637;42638 51337;51338;51339;51340;51341;51342;51343;51344;51345 51344 9 HIPLAPGSDWR Unmodified 1247.6411 0.64110515 811 P26358;P26358-2;P26358-3 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 43.752 44.274 3 0.00022985 13497 20211116_3446_TMUAki_TMT10x_S_F7 86.189 67.749 1878100 3305100 59422 3503700 2546100 2362700 2110300 2404200 2110400 2058500 2751100 1749100 3084800 220440 3543200 2434000 2478300 2163400 2432000 2169700 2024700 2634100 3 3 3 3 3 3 3 3 3 3 3 806710 1201800 22027 1350600 1486800 1506200 1092200 996170 877080 797930 1092100 751290 1121900 96935 1369700 1417000 1513400 1121900 1032600 909320 787460 1046800 1 1 1 1 1 1 1 1 1 1 1 1071400 2103300 37395 2153100 1059400 856480 1018100 1408000 1233400 1260600 1659000 997810 1962800 123510 2173600 1017000 964900 1041500 1399300 1260400 1237200 1587200 2 2 2 2 2 2 2 2 2 2 2 264460000 140790000 123660000 8007 811 7467 42639;42640 51346;51347;51348 51347 3 HIQALAIR Unmodified 920.55558 0.55558461 675 P14735;P14735-2 IDE Insulin-degrading enzyme yes no 0 0 0 0 By matching By MS/MS 1 0 2 1 1 33.929 33.934 3 0.00083904 9515 20211116_3439_TMUAki_TMT10x_S_F1 111.82 75.259 205310 334630 0 343750 245960 186020 241160 211960 224140 221710 281870 191160 312280 16906 347680 235680 199810 244350 214490 230820 216130 270120 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 205310 334630 0 343750 245960 186020 241160 211960 224140 221710 281870 191160 312280 16906 347680 235680 199810 244350 214490 230820 216130 270120 1 1 0 1 1 1 1 1 1 1 1 34321000 8750500 25570000 8008 675 7468 42641;42642 51349 51349 1 HISSLEVIGAGLHCPSPQLIATLK Unmodified 2540.3785 0.37847845 39 CON__P02777 yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 69.562 69.438 4 1.2648E-22 22829 20211116_3442_TMUAki_TMT10x_S_F4 152.81 131.81 + 15652000 25852000 74976 26847000 17045000 29310000 17863000 13330000 13271000 13663000 20379000 14574000 24127000 1354000 27355000 16367000 29348000 17934000 14370000 13954000 13330000 19439000 3 3 2 3 3 3 3 3 3 3 3 12276000 19934000 74976 20978000 12569000 24896000 13532000 10585000 10618000 10679000 16378000 11431000 18604000 1091700 21386000 12080000 24800000 13586000 11487000 11134000 10426000 15621000 2 2 2 2 2 2 2 2 2 2 2 3376100 5918400 0 5869700 4476700 4413800 4330100 2745100 2652800 2984100 4001100 3143200 5522300 262240 5969700 4286700 4548800 4347900 2882400 2820000 2904600 3818000 1 1 0 1 1 1 1 1 1 1 1 3965600000 2500300000 1465200000 8009 39 7469 42643;42644;42645 51350;51351;51352 51352 3 HITIFSPEGR Unmodified 1155.6037 0.60365701 1280 P60900 PSMA6 Proteasome subunit alpha type-6 yes yes 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 39.714 39.994 3 0.00049042 9809 20211116_3445_TMUAki_TMT10x_S_F6 91.549 69.418 2170300 3261600 207980 4287500 2761100 3438400 2430700 2175800 2162500 2118500 2688700 2022300 3047300 381320 4288800 2651700 3526800 2474600 2274200 2230400 2071400 2577400 4 4 3 4 4 4 4 4 4 4 4 1440700 2071500 181550 2843100 2071300 2723200 1693700 1429700 1361300 1319100 1711300 1342800 1935800 297480 2844200 1987500 2752500 1727400 1515600 1411900 1292800 1640000 1 1 1 1 1 1 1 1 1 1 1 729560 1190200 26430 1444400 689800 715250 737060 746110 801140 799430 977400 679490 1111500 83848 1444700 664160 774320 747150 758630 818470 778570 937410 3 3 2 3 3 3 3 3 3 3 3 167310000 83284000 84024000 8010 1280 7470 42646;42647;42648 51353;51354;51355;51356 51354 4 HIVENAVQK Unmodified 1036.5665 0.56654322 84 O00410;O00410-2;O00410-3 IPO5 Importin-5 yes no 0 0 0 0 By MS/MS 5 0 1 1 32.32 32.26 3 0.0008913 7596 20211116_3433_TMUAki_TMT10x_P_F5 85.744 64.843 918930 1367900 29614 1436300 1586100 1782600 1070000 796170 863160 785040 1086500 855830 1276600 113130 1465600 1509600 1772400 1105900 858940 895090 767170 1041200 1 1 1 1 1 1 1 1 1 1 1 918930 1367900 29614 1436300 1586100 1782600 1070000 796170 863160 785040 1086500 855830 1276600 113130 1465600 1509600 1772400 1105900 858940 895090 767170 1041200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 80169000 80169000 0 8011 84 7471 42649 51357 51357 1 HIVLSGGSTMYPGLPSR Oxidation (M) 1786.9036 0.90360378 1297 P61160;P61160-2 ACTR2 Actin-related protein 2 yes no 0 0 1 0 By MS/MS 2 0.816 1 1 1 3 45.816 45.724 3 4.7329E-11 13840 20211116_3429_TMUAki_TMT10x_P_F2 129.29 115.33 7399900 11083000 157950 13727000 18224000 19203000 11257000 12070000 12506000 10194000 11245000 6891200 10352000 903770 13899000 17308000 19065000 11821000 12576000 12623000 10033000 10887000 5 5 4 5 5 5 5 5 5 5 5 7399900 11083000 157950 13727000 18224000 19203000 11257000 12070000 12506000 10194000 11245000 6891200 10352000 903770 13899000 17308000 19065000 11821000 12576000 12623000 10033000 10887000 5 5 4 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 701660000 701660000 0 8012 1297 7472 42650;42651;42652 51358;51359;51360;51361;51362 51360 1751 5 HIVLSGGSTMYPGLPSR Unmodified 1770.9087 0.90868916 1297 P61160;P61160-2 ACTR2 Actin-related protein 2 yes no 0 0 0 0 By MS/MS 3 0 1 1 50.899 50.537 3 5.6312E-11 17382 20211116_3441_TMUAki_TMT10x_S_F3 127.2 101.07 3539000 6022200 55460 6565800 3833700 3503500 3344400 5695300 5402700 5165700 5582100 3295600 5621400 349220 6614000 3667000 3807300 3481600 5664100 5412600 5066900 5379300 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3539000 6022200 55460 6565800 3833700 3503500 3344400 5695300 5402700 5165700 5582100 3295600 5621400 349220 6614000 3667000 3807300 3481600 5664100 5412600 5066900 5379300 3 3 3 3 3 3 3 3 3 3 3 91081000 0 91081000 8013 1297 7472 42653 51363;51364;51365 51364 3 HIVLSGGSTMYPGLPSRLER Oxidation (M) 2185.1314 0.13137188 1297 P61160;P61160-2 ACTR2 Actin-related protein 2 yes no 0 0 1 1 By MS/MS By MS/MS 2.8 0.748 2 2 1 2 3 46.198 46.1 4 3.974E-18 15556 20211116_3441_TMUAki_TMT10x_S_F3 148.26 132.14 4956000 8401500 37875 8925000 8471700 10418000 6554200 6983300 7008700 6126900 7560700 4614800 7841400 487270 9090300 8076600 10444000 6762500 7247800 7129800 6019100 7276500 6 6 4 6 6 6 6 6 6 6 6 3779200 6356700 33138 6804400 7446500 9265400 5647400 5369500 5322100 4685200 5685500 3519000 5933200 393700 6946800 7096700 9199600 5812400 5635500 5441500 4604000 5473400 4 4 3 4 4 4 4 4 4 4 4 1176800 2044800 4737 2120600 1025200 1152800 906720 1613800 1686500 1441700 1875200 1095700 1908300 93572 2143500 979910 1244500 950060 1612300 1688300 1415100 1803100 2 2 1 2 2 2 2 2 2 2 2 1312300000 581280000 731050000 8014 1297 7473 42654;42655;42656;42657;42658 51366;51367;51368;51369;51370;51371 51371 1751 6 HIWITAAK Unmodified 938.53379 0.53378653 395 O94906;O94906-2 PRPF6 Pre-mRNA-processing factor 6 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 42.353 42.407 3 0.026851 12901 20211116_3430_TMUAki_TMT10x_P_F3 54.157 40.649 302870 437090 0 493410 556590 524860 353280 267860 241060 233390 375970 282000 408060 27440 499850 528490 526980 365510 284280 254930 229360 358500 1 1 0 1 1 1 1 1 1 1 1 302870 437090 0 493410 556590 524860 353280 267860 241060 233390 375970 282000 408060 27440 499850 528490 526980 365510 284280 254930 229360 358500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14246000 14246000 0 8015 395 7474 42659;42660 51372;51373 51372 2 HIYFINCGDSR Unmodified 1380.6245 0.62446881 353 O75688;O75688-2;O75688-5;O75688-4 PPM1B Protein phosphatase 1B yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 40.151 40.38 3 0.0019239 9586 20211116_3434_TMUAki_TMT10x_P_F6 72.887 68.085 1010800 1590800 19212 1922200 3190600 2877600 1505300 1575300 1600300 1349100 1583800 941320 1485600 132240 1951800 3018100 2843300 1617900 1660600 1623300 1326900 1528300 1 1 1 1 1 1 1 1 1 1 1 1010800 1590800 19212 1922200 3190600 2877600 1505300 1575300 1600300 1349100 1583800 941320 1485600 132240 1951800 3018100 2843300 1617900 1660600 1623300 1326900 1528300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 158740000 158740000 0 8016 353 7475 42661;42662;42663;42664 51374;51375;51376 51374 3 HIYLLPSGR Unmodified 1054.5924 0.59236404 703 P17174;P17174-2 GOT1 Aspartate aminotransferase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 2 3 40.613 40.491 3 0.00014446 11820 20211116_3429_TMUAki_TMT10x_P_F2 125.16 95.784 1861000 2866300 3264.2 3078200 2629900 2678300 1986700 2383000 2211000 2156800 2524100 1732600 2675400 150610 3119300 2504600 2746500 2055700 2431000 2250600 2115700 2425200 6 6 1 6 6 6 6 6 6 6 6 945570 1407900 3264.2 1490200 1738000 1931900 1142100 1089800 1065200 1044500 1196900 880380 1314000 85382 1521100 1651200 1922000 1187300 1149200 1091700 1021900 1150500 3 3 1 3 3 3 3 3 3 3 3 915420 1458500 0 1587900 891950 746400 844530 1293200 1145800 1112300 1327200 852260 1361400 65225 1598200 853380 824580 868450 1281800 1158900 1093800 1274700 3 3 0 3 3 3 3 3 3 3 3 304990000 162200000 142790000 8017 703 7476 42665;42666;42667;42668;42669 51377;51378;51379;51380;51381;51382 51377 6 HIYYITGETK Unmodified 1223.6186 0.61863837 544 P07900;P07900-2;Q58FG0 HSP90AA1;HSP90AA5P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 yes no 0 0 0 0 By MS/MS By MS/MS 5.59 1.9 1 2 2 3 5 7 2 9 13 38.242 38.353 2;3 3.1811E-23 11352 20211116_3435_TMUAki_TMT10x_P_F7 234.05 193.95 32408000 48521000 342260 59845000 72663000 57419000 38534000 37176000 40677000 32880000 43977000 30176000 45318000 3423900 60216000 68826000 58190000 40937000 38691000 41405000 32289000 42321000 25 25 17 25 25 25 25 25 25 25 25 24073000 35607000 271420 43770000 64567000 50979000 29739000 28098000 30732000 24552000 32021000 22416000 33256000 2687900 44184000 61042000 50975000 32017000 29616000 31266000 24124000 30849000 14 14 10 14 14 14 14 14 14 14 14 8334500 12914000 70839 16075000 8096700 6440500 8794700 9078000 9945000 8328100 11957000 7760600 12062000 735980 16032000 7784200 7214700 8920000 9074300 10138000 8164500 11472000 11 11 7 11 11 11 11 11 11 11 11 7396500000 5743600000 1652900000 8018 544 7477 42670;42671;42672;42673;42674;42675;42676;42677;42678;42679;42680;42681;42682;42683;42684;42685;42686;42687;42688;42689;42690;42691 51383;51384;51385;51386;51387;51388;51389;51390;51391;51392;51393;51394;51395;51396;51397;51398;51399;51400;51401;51402;51403;51404;51405;51406;51407;51408;51409;51410;51411;51412 51393 30 HIYYITGETKDQVANSAFVER Unmodified 2440.2023 0.20228822 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 1 By MS/MS By MS/MS 6.64 1.92 1 2 4 4 5 6 52.141 52.352 3;4 1.0739E-82 14553 20211116_3447_TMUAki_TMT10x_S_F8 279.15 257.16 50071000 105040000 1035000 73707000 105610000 149700000 81168000 154860000 146930000 122920000 102630000 46629000 97900000 4867900 78543000 100710000 147940000 85646000 156230000 145030000 121360000 100370000 19 19 12 19 19 19 19 19 19 19 19 27364000 58309000 596170 39287000 60129000 114270000 57584000 89736000 84596000 71224000 55352000 25482000 54337000 2290100 42544000 57624000 111230000 59379000 91921000 83842000 70324000 54301000 9 9 5 9 9 9 9 9 9 9 9 22708000 46735000 438820 34420000 45484000 35437000 23585000 65123000 62337000 51691000 47278000 21146000 43562000 2577900 35999000 43086000 36705000 26268000 64313000 61187000 51038000 46073000 10 10 7 10 10 10 10 10 10 10 10 16124000000 9143200000 6980900000 8019 544 7478 42692;42693;42694;42695;42696;42697;42698;42699;42700;42701;42702 51413;51414;51415;51416;51417;51418;51419;51420;51421;51422;51423;51424;51425;51426;51427;51428;51429;51430;51431 51431 19 HKDAAIYLVTSLASK Unmodified 1615.8934 0.89335667 1234 P55060;P55060-3;P55060-4 CSE1L Exportin-2 yes no 0 0 0 1 By MS/MS By MS/MS 3.57 0.495 3 4 3 4 62.66 62.53 3;4 1.2697E-06 19412 20211116_3431_TMUAki_TMT10x_P_F4 112.24 80.408 27951000 48919000 329430 48599000 33649000 44570000 33061000 34501000 36373000 36822000 39118000 26027000 45645000 2627700 49541000 32264000 45427000 33668000 35656000 36955000 35866000 37650000 7 7 4 7 7 7 7 7 7 7 7 9808700 16699000 47931 15863000 15955000 23533000 13549000 12586000 13360000 13015000 13099000 9132700 15579000 879900 16357000 15237000 23255000 13864000 13362000 13590000 12693000 12645000 3 3 1 3 3 3 3 3 3 3 3 18142000 32220000 281500 32736000 17693000 21037000 19511000 21915000 23013000 23807000 26018000 16894000 30066000 1747800 33184000 17027000 22172000 19804000 22294000 23365000 23173000 25006000 4 4 3 4 4 4 4 4 4 4 4 5197100000 2705900000 2491200000 8020 1234 7479 42703;42704;42705;42706;42707;42708;42709 51432;51433;51434;51435;51436;51437;51438;51439 51434 8 HKDIDILIVR Unmodified 1220.7241 0.7241065 1155 P51553;P51553-2 IDH3G Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial yes no 0 0 0 1 By MS/MS 7 0 1 1 44.227 44.752 4 0.0047191 13721 20211116_3446_TMUAki_TMT10x_S_F7 72.2 54.381 556640 961310 1373.9 906890 530790 570240 567290 733910 713000 702940 756360 518290 896800 47067 923990 509950 605370 578030 737000 720520 687800 728290 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 556640 961310 1373.9 906890 530790 570240 567290 733910 713000 702940 756360 518290 896800 47067 923990 509950 605370 578030 737000 720520 687800 728290 1 1 1 1 1 1 1 1 1 1 1 72558000 0 72558000 8021 1155 7480 42710 51440 51440 1 HKELAPYDENWFYTR Unmodified 1967.9166 0.91661131 974 P39019 RPS19 40S ribosomal protein S19 yes yes 0 0 0 1 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 51.676 51.918 4 1.8796E-06 14215 20211116_3434_TMUAki_TMT10x_P_F6 107.73 95.942 4134500 6883500 0 6012400 6558200 9129600 5907000 8756800 6581200 6551300 7482800 3849300 6419800 339050 6241800 6269500 9100000 6046700 8856100 6697700 6489300 7190500 2 2 0 2 2 2 2 2 2 2 2 1979400 2894600 0 2524600 3995900 6521700 4154400 4194800 3113300 3112800 3420500 1842900 2699600 184080 2661400 3834900 6345000 4173400 4350100 3223700 3084700 3290100 1 1 0 1 1 1 1 1 1 1 1 2155100 3988900 0 3487800 2562300 2607900 1752700 4562000 3467900 3438600 4062300 2006400 3720200 154960 3580400 2434500 2755000 1873300 4506100 3474000 3404600 3900400 1 1 0 1 1 1 1 1 1 1 1 1375400000 487690000 887680000 8022 974 7481 42711;42712;42713 51441;51442 51441 2 HKLDVTSVEDYK Unmodified 1432.7198 0.71980898 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 1 By MS/MS By MS/MS 6 0.707 2 4 2 5 3 42.8 42.962 3;4 1.0359E-11 12613 20211116_3435_TMUAki_TMT10x_P_F7 162.6 133.86 26880000 38795000 337820 57344000 77919000 51485000 35116000 34861000 39344000 27552000 40160000 25030000 36269000 2821800 57102000 73649000 52437000 37988000 36064000 39870000 27209000 38715000 9 9 6 9 9 9 9 9 9 9 9 16930000 24473000 66934 35808000 68945000 43788000 26785000 22417000 25931000 17344000 24871000 15763000 22878000 1758100 35848000 65045000 43636000 29347000 23719000 26380000 17148000 24025000 5 5 2 5 5 5 5 5 5 5 5 9950500 14322000 270880 21536000 8973100 7696100 8330900 12444000 13413000 10208000 15289000 9266900 13391000 1063700 21254000 8604100 8800700 8641300 12345000 13490000 10062000 14691000 4 4 4 4 4 4 4 4 4 4 4 2713400000 1813100000 900320000 8023 1079 7482 42714;42715;42716;42717;42718;42719;42720;42721 51443;51444;51445;51446;51447;51448;51449;51450;51451;51452 51447 10 HKLVSDGQALPEMEIHLQTNAEK Oxidation (M) 2603.3014 0.30135034 1578 Q12931;Q12931-2 TRAP1 Heat shock protein 75 kDa, mitochondrial yes no 0 0 1 1 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 42.686 42.999 5 2.6731E-07 10877 20211116_3445_TMUAki_TMT10x_S_F6 88.79 75.862 1819600 2865500 41156 2970100 2602600 3743100 2064600 3118300 3550600 2567500 2661200 1694600 2674200 199240 3034200 2484400 3751500 2168300 3185500 3515500 2530300 2594700 2 2 1 2 2 2 2 2 2 2 2 1237400 1798500 41156 1888100 2049800 3113500 1578900 1956300 2255700 1659400 1699200 1152400 1678500 152320 1938100 1956100 3070300 1647100 2038500 2245400 1632900 1656400 1 1 1 1 1 1 1 1 1 1 1 582260 1067000 0 1082100 552780 629560 485690 1162000 1294900 908120 961990 542130 995660 46919 1096100 528290 681230 521210 1146900 1270100 897370 938300 1 1 0 1 1 1 1 1 1 1 1 355280000 177380000 177910000 8024 1578 7483 42722;42723 51453;51454 51454 2139 2 HKPAFTEEDVLNIFPVVK Unmodified 2082.115 0.11497676 312 O75153 CLUH Clustered mitochondria protein homolog yes yes 0 0 0 1 By MS/MS By MS/MS 5 3.29 2 1 2 3 2 71.211 71.239 4 3.1154E-17 22282 20211116_3447_TMUAki_TMT10x_S_F8 148.03 132.63 36574000 62142000 574150 52624000 39614000 61561000 46514000 37905000 29935000 35744000 45491000 34059000 57950000 3609900 54491000 38192000 61631000 46307000 39668000 31731000 34999000 43402000 5 5 5 5 5 5 5 5 5 5 5 22337000 36433000 310820 31312000 22998000 45179000 29893000 24299000 18230000 22531000 28466000 20800000 33977000 2150800 32513000 22244000 44701000 29600000 25706000 19420000 22078000 27144000 3 3 3 3 3 3 3 3 3 3 3 14238000 25709000 263330 21312000 16616000 16382000 16622000 13606000 11705000 13214000 17025000 13259000 23973000 1459100 21978000 15948000 16930000 16707000 13962000 12312000 12921000 16259000 2 2 2 2 2 2 2 2 2 2 2 3723100000 2320900000 1402200000 8025 312 7484 42724;42725;42726;42727;42728 51455;51456;51457;51458;51459 51459 5 HKPDFISLFK Unmodified 1230.6761 0.67609367 2352 Q92621 NUP205 Nuclear pore complex protein Nup205 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0 2 1 1 58.722 58.394 4 0.0021722 20552 20211116_3441_TMUAki_TMT10x_S_F3 79.82 52.851 3672200 5886300 0 7133200 4225900 5215800 3546900 3372900 3890100 3616000 4283600 3418900 5497200 278600 7160200 4032700 5390300 3643900 3529600 3956500 3521500 4120100 2 2 0 2 2 2 2 2 2 2 2 1777900 2811100 0 3348100 2988500 3677100 2017000 1552700 1892600 1778700 2013800 1655300 2625000 148120 3382600 2840100 3677900 2092900 1692700 1935100 1727900 1938900 1 1 0 1 1 1 1 1 1 1 1 1894300 3075200 0 3785100 1237400 1538700 1529900 1820100 1997500 1837300 2269900 1763600 2872100 130480 3777700 1192700 1712400 1551000 1836900 2021400 1793700 2181200 1 1 0 1 1 1 1 1 1 1 1 715050000 345720000 369340000 8026 2352 7485 42729;42730 51460;51461 51461 2 HLAAVEER Unmodified 923.48248 0.48247924 2379;2263 Q8TAQ2;Q8TAQ2-2;Q8TAQ2-3;Q92922 SMARCC2;SMARCC1 SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1 no no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 27.51 27.249 2;3 0.0019488 8016 20211116_3441_TMUAki_TMT10x_S_F3 95.815 25.991 176120 287860 3903.1 286110 199270 233210 237720 138280 128470 152160 198400 164020 268600 18564 291220 192270 238700 235740 145800 137960 148040 189230 2 2 2 2 2 2 2 2 2 2 2 79462 130790 1849.9 108210 90155 131710 100870 73395 68048 68981 86302 74001 121960 8461.8 112340 86826 131420 100740 77433 71312 67552 82687 1 1 1 1 1 1 1 1 1 1 1 96662 157060 2053.1 177900 109110 101500 136850 64887 60421 83182 112100 90017 146640 10102 178870 105440 107290 135000 68368 66646 80486 106540 1 1 1 1 1 1 1 1 1 1 1 23554000 14924000 8629900 8027 2263;2379 7486 42731;42732;42733;42734 51462;51463;51464;51465 51464 4 HLAEHSPYYEAMK Oxidation (M) 1590.7137 0.71367774 1578 Q12931;Q12931-2 TRAP1 Heat shock protein 75 kDa, mitochondrial yes no 0 0 1 0 By MS/MS 4.5 0.5 2 2 4 32.303 32.287 3;4 4.1137E-09 7592 20211116_3433_TMUAki_TMT10x_P_F5 122.7 100.22 1892900 3150900 0 3693100 5580900 4621600 2859500 2439100 2605100 1952000 2901400 1762400 2942100 205570 3743100 5282600 4601800 3034900 2575500 2671900 1926400 2789700 4 4 0 4 4 4 4 4 4 4 4 1892900 3150900 0 3693100 5580900 4621600 2859500 2439100 2605100 1952000 2901400 1762400 2942100 205570 3743100 5282600 4601800 3034900 2575500 2671900 1926400 2789700 4 4 0 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 315800000 315800000 0 8028 1578 7487 42735;42736;42737;42738 51466;51467;51468;51469 51468 2140 4 HLAEVLER Unmodified 965.52943 0.52942943 1950 Q5VTR2 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 0 0 0 0 By MS/MS 3 0 1 1 35.395 35.155 3 0.0018465 11071 20211116_3441_TMUAki_TMT10x_S_F3 88.819 55.926 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8029 1950 7488 42739 51470 51470 1 HLAGLAELLPESR Unmodified 1404.7725 0.77251325 2950 Q9NU22 MDN1 Midasin yes yes 0 0 0 0 By MS/MS 6 0 1 1 58.013 58.051 3 9.7397E-06 17131 20211116_3445_TMUAki_TMT10x_S_F6 90.412 66.323 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8030 2950 7489 42740 51471 51471 1 HLAGLGLTEAIDK Unmodified 1336.7351 0.73506511 1136 P50454 SERPINH1 Serpin H1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 53.462 53.625 3 8.2044E-12 15003 20211116_3444_TMUAki_TMT10x_S_F5 148.18 122.24 8983300 14235000 62792 15613000 12754000 12939000 10156000 13462000 13527000 11458000 12516000 8363600 13288000 700620 15790000 12157000 13358000 10542000 13601000 13578000 11273000 12105000 3 3 1 3 3 3 3 3 3 3 3 2830800 4382700 0 4825500 5671700 6796300 4205700 4515400 4308000 3776000 3900500 2634700 4091200 142540 4921000 5392900 6750800 4345800 4683900 4363700 3718300 3775300 1 1 0 1 1 1 1 1 1 1 1 6152500 9852600 62792 10787000 7082000 6142600 5950400 8946400 9218900 7681900 8615400 5728900 9197000 558080 10869000 6764400 6607200 6196100 8916700 9214200 7554600 8329700 2 2 1 2 2 2 2 2 2 2 2 1414000000 380980000 1033000000 8031 1136 7490 42741;42742;42743 51472;51473;51474 51473 3 HLALNLQEK Unmodified 1064.5978 0.59784335 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 39.543 39.899 3 6.1593E-05 9959 20211116_3434_TMUAki_TMT10x_P_F6 99.802 71.968 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8032 1723 7491 42744;42745 51475;51476 51475 2 HLANMMGEDPETFTQEDIDR 2 Oxidation (M) 2379.9947 0.99473957 1444 P82933 MRPS9 28S ribosomal protein S9, mitochondrial yes yes 0 0 2 0 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 41.752 41.662 3 1.5152E-13 12699 20211116_3439_TMUAki_TMT10x_S_F1 138.3 127.35 413160 700960 22144 839240 626120 725440 511530 668460 648640 503920 632270 384850 654590 57235 844690 598780 744770 529100 677600 653300 498930 610440 2 2 1 2 2 2 2 2 2 2 2 296020 482550 22144 623420 547640 606730 430650 484980 437290 343000 452170 275790 450800 48704 625790 523500 616390 443150 494990 445110 340840 435740 1 1 1 1 1 1 1 1 1 1 1 117140 218410 0 215820 78486 118710 80884 183480 211340 160920 180100 109070 203790 8531.2 218900 75275 128380 85957 182600 208190 158090 174700 1 1 0 1 1 1 1 1 1 1 1 139920000 89762000 50154000 8033 1444 7492 42746;42747;42748 51477;51478;51479 51479 1949;1950 3 HLAPEVFR Unmodified 967.52395 0.52395013 121 O14639;O14639-5;O14639-4;O14639-3;O14639-2;O14639-6 ABLIM1 Actin-binding LIM protein 1 yes no 0 0 0 0 By MS/MS 5 0 1 1 35.421 35.596 3 0.0083721 7747 20211116_3444_TMUAki_TMT10x_S_F5 67.169 49.93 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8034 121 7493 42749 51480 51480 1 HLAPPGLHPVPGGVFPVPPAAVVLMK Oxidation (M) 2612.4665 0.46650559 1583 Q12996 CSTF3 Cleavage stimulation factor subunit 3 yes yes 0 0 1 0 By MS/MS By MS/MS 5 0 2 1 1 70.479 70.525 4 3.5068E-06 21952 20211116_3444_TMUAki_TMT10x_S_F5 78.708 64.398 28940000 49601000 604450 44396000 32555000 37799000 33056000 24418000 21342000 26218000 33473000 26950000 46264000 2974500 45560000 31262000 38613000 33141000 25555000 22655000 25532000 31914000 5 5 4 5 5 5 5 5 5 5 5 10363000 17331000 426200 16047000 9911500 17347000 11308000 8880000 7937000 9253200 11658000 9652300 16167000 1250100 16481000 9564600 17402000 11293000 9467100 8354100 9021700 11131000 2 2 2 2 2 2 2 2 2 2 2 18577000 32270000 178250 28349000 22643000 20451000 21748000 15538000 13405000 16965000 21814000 17298000 30096000 1724400 29079000 21697000 21211000 21848000 16088000 14301000 16510000 20783000 3 3 2 3 3 3 3 3 3 3 3 2158100000 1115600000 1042500000 8035 1583 7494 42750;42751 51481;51482;51483;51484;51485 51484 2145 5 HLAPPPLLSPLLPSIKPTVR Unmodified 2145.3038 0.30378059 1720 Q14676;Q14676-2;Q14676-3 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 68.664 69.063 4 1.7574E-24 23701 20211116_3446_TMUAki_TMT10x_S_F7 171.29 164.06 12234000 20574000 148930 20179000 16297000 22242000 15452000 14656000 12940000 15014000 15645000 11392000 19197000 1210000 20645000 15614000 22361000 15640000 15294000 13370000 14649000 15008000 4 4 4 4 4 4 4 4 4 4 4 7940800 12790000 76510 12536000 8935900 17217000 10015000 9710500 8337900 9631200 9558400 7394300 11933000 743590 12876000 8599900 17082000 10050000 10249000 8599000 9409600 9182900 2 2 2 2 2 2 2 2 2 2 2 4293500 7784700 72418 7643500 7361100 5024500 5437100 4945100 4602500 5383000 6086300 3998200 7263500 466410 7768400 7014200 5278400 5589800 5045000 4771400 5239300 5825300 2 2 2 2 2 2 2 2 2 2 2 2026100000 1211400000 814690000 8036 1720 7495 42752;42753 51486;51487;51488;51489 51489 4 HLAQVGDSMDR Oxidation (M) 1243.5615 0.5615342 1250 P55957;P55957-2 BID BH3-interacting domain death agonist;BH3-interacting domain death agonist p15;BH3-interacting domain death agonist p13;BH3-interacting domain death agonist p11 yes no 0 0 1 0 By MS/MS 3 0 1 1 27.637 27.354 3 0.019463 8030 20211116_3441_TMUAki_TMT10x_S_F3 54.286 39.02 44253 81822 0 65959 57699 59607 55856 57902 67694 50957 49298 41198 76290 3115.9 68314 55230 61077 57120 58748 67696 50054 48126 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 44253 81822 0 65959 57699 59607 55856 57902 67694 50957 49298 41198 76290 3115.9 68314 55230 61077 57120 58748 67696 50054 48126 1 1 0 1 1 1 1 1 1 1 1 5386900 0 5386900 8037 1250 7496 42754 51490 51490 1699 1 HLAVLNFPK Unmodified 1037.6022 0.60220045 254 O43913;O43913-2 ORC5 Origin recognition complex subunit 5 yes no 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 52.192 51.929 3 0.0010365 16401 20211116_3429_TMUAki_TMT10x_P_F2 82.452 57.661 3450700 5664300 30811 6436000 4831700 5441400 3388200 4785000 4889900 4243200 4947000 3213000 5288300 320710 6496400 4597600 5590000 3558700 4881900 4910900 4166500 4770400 2 2 1 2 2 2 2 2 2 2 2 1489600 2227800 0 2586200 3070400 3740100 1859100 2080400 2187400 1760000 2132300 1386900 2080100 132210 2630300 2912700 3701700 1959200 2189400 2209000 1732100 2058600 1 1 0 1 1 1 1 1 1 1 1 1961000 3436600 30811 3849800 1761300 1701300 1529100 2704600 2702500 2483200 2814700 1826100 3208200 188500 3866100 1684900 1888300 1599500 2692600 2702000 2434400 2711700 1 1 1 1 1 1 1 1 1 1 1 288400000 127050000 161360000 8038 254 7497 42755;42756;42757 51491;51492 51491 2 HLAVMPHPER Oxidation (M) 1201.6026 0.60261115 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 1 0 By MS/MS 5 0 3 3 25.171 25.096 3 0.025908 4530 20211116_3433_TMUAki_TMT10x_P_F5 51.445 34.205 102930 166980 0 151080 117830 158650 87134 87265 100160 84953 101890 95830 155750 5975 155360 112130 159550 90392 92259 101380 83065 98233 2 2 0 2 2 2 2 2 2 2 2 102930 166980 0 151080 117830 158650 87134 87265 100160 84953 101890 95830 155750 5975 155360 112130 159550 90392 92259 101380 83065 98233 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5195300 5195300 0 8039 157 7498 42758;42759;42760 51493;51494;51495 51493 122 3 HLAVMPHPER Unmodified 1185.6077 0.60769653 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 0 By MS/MS 4.67 0.471 1 2 3 30.089 30.057 3;4 0.00038077 6690 20211116_3433_TMUAki_TMT10x_P_F5 96.015 78.629 385560 575830 7816.9 652720 689530 716570 418830 284830 430960 347130 424740 359050 537600 43508 661410 654820 716350 439370 313250 437680 336460 409930 2 2 2 2 2 2 2 2 2 2 2 385560 575830 7816.9 652720 689530 716570 418830 284830 430960 347130 424740 359050 537600 43508 661410 654820 716350 439370 313250 437680 336460 409930 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 70267000 70267000 0 8040 157 7498 42761;42762;42763 51496;51497 51497 2 HLCEPGADGAETFADGVPR Unmodified 1997.8901 0.89013856 1735 Q14839;Q14839-2;Q8TDI0 CHD4;CHD5 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5 yes no 0 0 0 0 By MS/MS By MS/MS 2.14 1.12 3 1 2 1 3 4 45.224 45.164 3 5.4756E-62 12078 20211116_3428_TMUAki_TMT10x_P_F1 231.06 222.98 5968200 10226000 215050 12107000 9644000 9648400 6218500 8958500 8337400 6817000 8529700 5558500 9548800 662980 12181000 9173700 9965300 6552400 9079100 8396000 6746100 8222400 8 8 6 8 8 8 8 8 8 8 8 2465200 4269600 108110 5470700 6709100 6407900 3577300 3598200 3688100 2794100 3957000 2296200 3988500 364580 5510200 6360800 6407000 3795800 3776100 3756700 2762000 3808900 4 4 4 4 4 4 4 4 4 4 4 3502900 5956200 106940 6636100 2934800 3240500 2641200 5360400 4649300 4022900 4572700 3262300 5560300 298410 6671200 2812800 3558300 2756600 5303000 4639200 3984100 4413500 4 4 2 4 4 4 4 4 4 4 4 4212100000 1609900000 2602200000 8041 1735 7499 42764;42765;42766;42767;42768;42769;42770 51498;51499;51500;51501;51502;51503;51504;51505;51506 51499 9 HLCEPGADGSETFADGVPR Unmodified 2013.8851 0.88505318 1571 Q12873;Q12873-3;Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 0 0 0 0 By MS/MS 3 0 1 1 41.303 41.358 3 8.7961E-11 12454 20211116_3430_TMUAki_TMT10x_P_F3 117.65 106.6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8042 1571 7500 42771 51507 51507 1 HLCICSVDPPGCTDIDDALHCR Unmodified 2610.1083 0.10834631 3241 Q9Y2L1;Q9Y2L1-2 DIS3 Exosome complex exonuclease RRP44 yes no 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 2 3 53.681 53.724 4 1.0796E-10 15883 20211116_3431_TMUAki_TMT10x_P_F4 114.56 110.76 12928000 21303000 765360 24754000 17896000 17729000 14023000 14175000 12870000 12418000 17215000 12043000 19891000 1854700 24904000 17108000 18414000 14391000 14539000 13297000 12200000 16472000 5 5 5 5 5 5 5 5 5 5 5 4490900 7691300 498120 9213200 9282900 10550000 7303000 5301500 5010500 4534500 6208900 4185200 7182500 903670 9311500 8881200 10547000 7440300 5632100 5240200 4460200 5952400 2 2 2 2 2 2 2 2 2 2 2 8437000 13612000 267240 15540000 8612700 7179100 6720200 8873900 7859000 7883300 11006000 7857700 12709000 951000 15593000 8226900 7867400 6950800 8907100 8057100 7740100 10520000 3 3 3 3 3 3 3 3 3 3 3 2689300000 1146500000 1542800000 8043 3241 7501 42772;42773;42774;42775;42776 51508;51509;51510;51511;51512 51508 5 HLCQQLQAEQAAAEK Unmodified 1723.8312 0.83116712 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.75 0.433 1 3 3 1 37.973 38.067 3 3.1714E-20 9914 20211116_3433_TMUAki_TMT10x_P_F5 148.41 129.08 1935100 2863200 0 3948200 5928300 3783600 2502600 1785700 3059700 1882500 2859900 1801400 2675700 172240 3948700 5595300 3819800 2734800 1919400 3081300 1834500 2765000 2 2 0 2 2 2 2 2 2 2 2 1434900 2123800 0 2870200 5579300 3495000 2135300 1293900 2276700 1370000 2087000 1335700 1984500 137620 2884700 5260600 3472500 2350400 1428900 2303200 1334800 2019100 1 1 0 1 1 1 1 1 1 1 1 500200 739390 0 1078000 348960 288600 367310 491820 783050 512520 772950 465700 691200 34614 1064000 334750 347260 384490 490410 778060 499700 745950 1 1 0 1 1 1 1 1 1 1 1 397200000 285620000 111580000 8044 1741 7502 42777;42778;42779;42780 51513;51514;51515;51516 51514 4 HLCQQLQAEQAAAEKR Unmodified 1879.9323 0.93227815 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 1 By MS/MS By matching 5 0 2 1 1 34.23 34.295 4 0.0055295 8529 20211116_3433_TMUAki_TMT10x_P_F5 57.499 17.386 716090 894450 0 1490300 3260100 2168500 856000 1479100 1049800 1035300 1053000 666650 836840 82105 1488400 3064700 2151800 999990 1525300 1059600 1029400 1015700 1 1 0 1 1 1 1 1 1 1 1 716090 894450 0 1490300 3260100 2168500 856000 1479100 1049800 1035300 1053000 666650 836840 82105 1488400 3064700 2151800 999990 1525300 1059600 1029400 1015700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 94634000 70971000 23663000 8045 1741 7503 42781;42782 51517 51517 1 HLDFLKQPLATQK Unmodified 1537.8617 0.86166261 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 51.133 50.877 4 9.955E-12 14664 20211116_3440_TMUAki_TMT10x_S_F2 151.7 129.47 7082500 12322000 61759 12389000 10896000 12061000 8296600 12843000 14695000 11844000 12343000 6594400 11498000 632450 12629000 10382000 12325000 8749600 12989000 14586000 11609000 11980000 3 3 2 3 3 3 3 3 3 3 3 2306200 4011700 0 4115100 6890300 7558000 4250400 4331100 5432800 4356100 4555300 2146800 3743700 189700 4242300 6536100 7414700 4486000 4567200 5444100 4253300 4421500 1 1 0 1 1 1 1 1 1 1 1 4776200 8310100 61759 8273800 4006100 4502900 4046300 8512200 9261900 7488100 7788100 4447600 7754000 442750 8386800 3846000 4909900 4263700 8421600 9141900 7355500 7558500 2 2 2 2 2 2 2 2 2 2 2 1228600000 801970000 426610000 8046 1057 7504 42783;42784;42785 51518;51519;51520 51520 3 HLDHVAALFPGDVDR Unmodified 1660.8322 0.8321534 620 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 By MS/MS By MS/MS 4.89 0.737 3 4 2 4 5 47.87 48.039 3;4 5.017E-05 12727 20211116_3444_TMUAki_TMT10x_S_F5 92.939 78.682 24109000 40331000 224030 42278000 25895000 22208000 24613000 28631000 27653000 26056000 33903000 22448000 37641000 2127200 42693000 24804000 24006000 25127000 28708000 28221000 25554000 32511000 11 11 6 11 11 11 11 11 11 11 11 705600 1324100 0 1219500 1566300 1716900 826530 1020800 982820 817950 996250 656700 1235100 34984 1258900 1480900 1702700 881910 1066900 993490 807210 960630 1 1 0 1 1 1 1 1 1 1 1 23403000 39007000 224030 41059000 24329000 20491000 23787000 27610000 26670000 25238000 32906000 21792000 36406000 2092300 41434000 23323000 22303000 24245000 27641000 27227000 24746000 31550000 10 10 6 10 10 10 10 10 10 10 10 2150700000 282650000 1868000000 8047 620 7505 42786;42787;42788;42789;42790;42791;42792;42793;42794 51521;51522;51523;51524;51525;51526;51527;51528;51529;51530;51531;51532;51533;51534 51528 14 HLDQIIPR Unmodified 990.56106 0.56106391 2350 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 2 4 2 4 36.643 36.75 3 0.0018925 8234 20211116_3445_TMUAki_TMT10x_S_F6 96.253 71.33 966060 1565200 20074 1667600 1812400 1525200 1178400 1086900 1057700 1129100 1318700 899590 1460900 103570 1691800 1722700 1552700 1224700 1128500 1090600 1101000 1264000 8 8 4 8 8 8 8 8 8 8 8 463660 712690 12350 809290 1168900 997710 613730 553900 558570 554960 671410 431790 665380 57067 821610 1107400 994800 649850 585590 574660 541960 644190 2 2 1 2 2 2 2 2 2 2 2 502400 852520 7723.9 858280 643590 527490 564680 533030 499130 574120 647240 467800 795510 46500 870230 615310 557900 574880 542900 515900 559020 619790 6 6 3 6 6 6 6 6 6 6 6 111340000 73112000 38224000 8048 2350 7506 42795;42796;42797;42798;42799;42800 51535;51536;51537;51538;51539;51540;51541;51542 51541 8 HLDRIDSVLLTHIGADNLPGINGLLQR Unmodified 2949.6148 0.6148374 1435 P78559;P78559-2 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 yes no 0 0 0 1 By MS/MS By MS/MS 2 0 3 1 2 98.088 98.068 4;5 1.3835E-13 34837 20211116_3429_TMUAki_TMT10x_P_F2 120.85 103.92 386510 611760 8456.7 538900 411930 653980 468860 454050 454130 447640 469460 359950 570570 32768 556630 396920 654640 472150 471540 463190 437450 452400 8 8 4 8 8 8 8 8 8 8 8 267370 440690 8036 378120 270230 517860 331430 308290 325360 311400 332400 249010 410970 29696 392260 261130 514230 332800 324110 331510 304000 320430 3 3 3 3 3 3 3 3 3 3 3 119140 171080 420.7 160780 141700 136130 137430 145760 128770 136240 137060 110940 159600 3071.9 164380 135790 140410 139350 147430 131680 133460 131960 5 5 1 5 5 5 5 5 5 5 5 11856000 3776000 8079800 8049 1435 7507 42801;42802;42803 51543;51544;51545;51546;51547;51548;51549;51550 51544 8 HLDRVDSILLTHIGDDNLPGINSMLQR Oxidation (M) 3057.5666 0.56656658 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 1 1 By MS/MS By MS/MS 5.75 0.829 2 1 1 2 2 98.131 98.075 5 0.0020736 31417 20211116_3434_TMUAki_TMT10x_P_F6 56.914 44.423 120950 201790 3386.3 170440 133050 203560 136930 117200 123450 121370 140530 112640 188170 13353 176590 127880 203390 138270 123640 126780 118360 135030 2 2 2 2 2 2 2 2 2 2 2 56982 101610 2976.6 84734 59378 144400 77914 66155 65737 66182 78242 53078 94754 7531.9 88527 57581 141660 77685 71212 67853 64636 75090 1 1 1 1 1 1 1 1 1 1 1 63963 100180 409.65 85707 73674 59162 59013 51044 57711 55183 62287 59559 93421 5820.8 88060 70298 61725 60585 52432 58931 53724 59945 1 1 1 1 1 1 1 1 1 1 1 10063000 6462300 3600800 8050 1057 7508 42804;42805;42806;42807 51551;51552 51551 1371 2 HLDRVDSILLTHIGDDNLPGINSMLQR Unmodified 3041.5717 0.57165196 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 1 By MS/MS By MS/MS 7.38 0.923 1 1 3 8 5 8 88.269 88.228 4;5 6.5914E-33 28006 20211116_3436_TMUAki_TMT10x_P_F8 167.23 139.03 2946100 4972000 33322 4433400 3627600 4232700 3697000 3414500 3482700 3662000 3747300 2743300 4637400 248280 4557800 3481600 4306000 3739800 3520300 3561800 3566300 3606700 26 26 18 26 26 26 26 26 26 26 26 1052400 1664700 14119 1452200 1116600 2118200 1311700 1178100 1213100 1314100 1229300 979990 1552600 80316 1506400 1076300 2095700 1317300 1249300 1239000 1277800 1185300 9 9 7 9 9 9 9 9 9 9 9 1893700 3307200 19203 2981200 2511000 2114500 2385300 2236400 2269600 2347900 2518100 1763300 3084800 167970 3051400 2405300 2210300 2422500 2271000 2322800 2288500 2421400 17 17 11 17 17 17 17 17 17 17 17 217080000 119210000 97873000 8051 1057 7508 42808;42809;42810;42811;42812;42813;42814;42815;42816;42817;42818;42819;42820 51553;51554;51555;51556;51557;51558;51559;51560;51561;51562;51563;51564;51565;51566;51567;51568;51569;51570;51571;51572;51573;51574;51575;51576;51577;51578 51554 26 HLEAAALLSER Unmodified 1208.6513 0.65133548 3139 Q9UJA5;Q9UJA5-4;Q9UJA5-2 TRMT6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 yes no 0 0 0 0 By MS/MS 4 0 1 1 43.002 43.089 3 7.3714E-08 11600 20211116_3431_TMUAki_TMT10x_P_F4 118.77 84.876 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8052 3139 7509 42821 51579 51579 1 HLEFSHDQYR Unmodified 1330.6054 0.60544792 2921 Q9NR45 NANS Sialic acid synthase yes yes 0 0 0 0 By MS/MS 4 0 1 1 30.793 30.827 4 0.01623 6714 20211116_3431_TMUAki_TMT10x_P_F4 58.63 53.023 263040 390000 14232 378300 425960 700800 348080 295060 322480 283020 304180 245020 363870 37353 391580 407340 684920 356350 320120 328540 276910 294000 1 1 1 1 1 1 1 1 1 1 1 263040 390000 14232 378300 425960 700800 348080 295060 322480 283020 304180 245020 363870 37353 391580 407340 684920 356350 320120 328540 276910 294000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25611000 25611000 0 8053 2921 7510 42822 51580 51580 1 HLEIIYAINQR Unmodified 1368.7514 0.75138388 620 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 49.983 50.155 3 4.268E-07 13660 20211116_3447_TMUAki_TMT10x_S_F8 134.84 105.18 9008000 14714000 105970 15587000 12935000 12098000 10040000 12251000 11547000 10612000 13083000 8388000 13733000 888850 15787000 12336000 12543000 10382000 12399000 11736000 10432000 12573000 6 6 4 6 6 6 6 6 6 6 6 3037500 4441900 42653 4875500 6026200 6510100 4113700 4084200 3848900 3343400 4292600 2828600 4146300 333440 4967600 5732700 6476700 4264500 4252700 3942900 3295900 4127200 2 2 2 2 2 2 2 2 2 2 2 5970500 10273000 63322 10711000 6909000 5587800 5926600 8166800 7698600 7268400 8790700 5559500 9587100 555410 10820000 6603100 6066400 6117800 8146400 7793200 7135700 8446300 4 4 2 4 4 4 4 4 4 4 4 2543600000 1267000000 1276600000 8054 620 7511 42823;42824;42825;42826;42827;42828 51581;51582;51583;51584;51585;51586;51587 51587 7 HLEINPDHPIVETLR Unmodified 1781.9424 0.94243213 553 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 0 By MS/MS By MS/MS 4.14 1.75 2 4 4 5 7 4 1 1 14 14 45.229 45.268 2;3;4 2.9492E-52 12647 20211116_3433_TMUAki_TMT10x_P_F5 293.38 273.28 78455000 121420000 831430 147120000 114860000 114970000 77159000 98413000 95546000 84546000 101410000 73049000 113390000 6806600 147790000 109190000 118730000 80806000 100480000 96605000 83144000 97646000 36 36 20 36 36 36 36 36 36 36 36 41389000 62205000 222610 73627000 81164000 84369000 48707000 49075000 49733000 42854000 50678000 38534000 58087000 3359200 74465000 76982000 84494000 51134000 51491000 50583000 42110000 48858000 18 18 7 18 18 18 18 18 18 18 18 37065000 59215000 608820 73496000 33701000 30598000 28452000 49338000 45814000 41692000 50733000 34515000 55307000 3447400 73327000 32209000 34239000 29672000 48989000 46022000 41034000 48788000 18 18 13 18 18 18 18 18 18 18 18 151290000000 77880000000 73408000000 8055 553 7512 42829;42830;42831;42832;42833;42834;42835;42836;42837;42838;42839;42840;42841;42842;42843;42844;42845;42846;42847;42848;42849;42850;42851;42852;42853;42854;42855;42856 51588;51589;51590;51591;51592;51593;51594;51595;51596;51597;51598;51599;51600;51601;51602;51603;51604;51605;51606;51607;51608;51609;51610;51611;51612;51613;51614;51615;51616;51617;51618;51619;51620;51621;51622;51623;51624 51602 37 HLEINPDHSIIETLR Unmodified 1785.9373 0.93734675 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 By MS/MS By MS/MS 4.32 1.26 2 3 5 5 4 10 9 49.852 49.904 2;3;4 8.2552E-39 14555 20211116_3433_TMUAki_TMT10x_P_F5 257.02 217.02 132810000 218860000 1819200 259160000 178430000 215740000 148410000 266870000 309430000 257390000 237760000 123670000 204370000 12317000 260890000 170420000 223610000 157090000 268470000 305210000 251770000 231570000 34 34 23 34 34 34 34 34 34 34 34 49804000 81785000 644800 90665000 101360000 141610000 75510000 88139000 96946000 83323000 81321000 46376000 76348000 4928200 92628000 96568000 139920000 78608000 92168000 97134000 81576000 78931000 16 16 9 16 16 16 16 16 16 16 16 83007000 137080000 1174400 168490000 77069000 74135000 72900000 178730000 212490000 174060000 156440000 77295000 128030000 7389100 168260000 73848000 83695000 78485000 176310000 208070000 170190000 152640000 18 18 14 18 18 18 18 18 18 18 18 73503000000 36217000000 37286000000 8056 544 7513 42857;42858;42859;42860;42861;42862;42863;42864;42865;42866;42867;42868;42869;42870;42871;42872;42873;42874;42875 51625;51626;51627;51628;51629;51630;51631;51632;51633;51634;51635;51636;51637;51638;51639;51640;51641;51642;51643;51644;51645;51646;51647;51648;51649;51650;51651;51652;51653;51654;51655;51656;51657;51658 51634 34 HLELPGQPLNNYHMK Oxidation (M) 1805.8883 0.88828807 1626 Q13394;Q9Y586 MAB21L1;MAB21L2 Protein mab-21-like 1;Protein mab-21-like 2 yes no 0 0 1 0 By MS/MS 7 0 1 1 41.332 41.78 4 7.8696E-05 12054 20211116_3435_TMUAki_TMT10x_P_F7 85.457 74.196 2621700 4317300 0 6116600 7494400 7366700 3723600 4297600 4216200 3503700 5760700 2440800 4035200 103620 6131500 7089400 7358600 3989400 4500700 4322500 3454600 5509300 2 2 0 2 2 2 2 2 2 2 2 2621700 4317300 0 6116600 7494400 7366700 3723600 4297600 4216200 3503700 5760700 2440800 4035200 103620 6131500 7089400 7358600 3989400 4500700 4322500 3454600 5509300 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 690730000 690730000 0 8057 1626 7514 42876 51659;51660 51659 2176 2 HLELPGQPLNNYHMK Unmodified 1789.8934 0.89337344 1626 Q13394;Q9Y586 MAB21L1;MAB21L2 Protein mab-21-like 1;Protein mab-21-like 2 yes no 0 0 0 0 By MS/MS By matching 7 0 2 1 1 47.171 47.695 4 0.00048521 14388 20211116_3435_TMUAki_TMT10x_P_F7 76.728 55.377 1828400 2921500 44655 3725900 3569800 3732500 2088800 1765800 1510900 1747200 2415300 1702800 2729100 217590 3744300 3388400 3757900 2178300 1894000 1594400 1707200 2302000 1 1 1 1 1 1 1 1 1 1 1 1828400 2921500 44655 3725900 3569800 3732500 2088800 1765800 1510900 1747200 2415300 1702800 2729100 217590 3744300 3388400 3757900 2178300 1894000 1594400 1707200 2302000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 612920000 343100000 269820000 8058 1626 7514 42877;42878 51661 51661 1 HLEMNPHFGSHR Oxidation (M) 1476.6681 0.66806496 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 1 0 By MS/MS By matching 5 0 2 1 1 26.859 26.862 4 0.0025145 5298 20211116_3433_TMUAki_TMT10x_P_F5 66.023 49.391 97953 144550 4425.9 90614 86500 158810 68081 90420 81339 72261 109570 91237 134680 12085 97271 82745 156040 70431 94841 83170 71322 104820 1 1 1 1 1 1 1 1 1 1 1 97953 144550 4425.9 90614 86500 158810 68081 90420 81339 72261 109570 91237 134680 12085 97271 82745 156040 70431 94841 83170 71322 104820 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10849000 10723000 125760 8059 1546 7515 42879;42880 51662 51662 2078 1 HLEPEPEEEIIAEDYDDDPVDYEATR Unmodified 3088.3309 0.33091495 291 O60828;O60828-5;O60828-2;O60828-4;O60828-3;O60828-10;O60828-9;O60828-8;O60828-7;O60828-6 PQBP1 Polyglutamine-binding protein 1 yes no 0 0 0 0 By MS/MS 1 0 1 1 64.42 64.42 3 1.8919E-30 19909 20211116_3428_TMUAki_TMT10x_P_F1 166.6 163.83 1075400 1665900 0 1647900 1084200 2065600 1373400 1070000 1106500 1122300 1197100 1001000 1554400 48367 1688600 1044200 2056100 1369700 1139700 1140500 1093900 1152000 2 2 0 2 2 2 2 2 2 2 2 1075400 1665900 0 1647900 1084200 2065600 1373400 1070000 1106500 1122300 1197100 1001000 1554400 48367 1688600 1044200 2056100 1369700 1139700 1140500 1093900 1152000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 653790000 653790000 0 8060 291 7516 42881 51663;51664 51663 2 HLEQRDEPQEPSNKVPEQQR Unmodified 2443.184 0.18401239 641 P12270 TPR Nucleoprotein TPR yes yes 0 0 0 2 By MS/MS 4 0 1 1 29.237 29.278 5 0.00015643 6105 20211116_3431_TMUAki_TMT10x_P_F4 67.312 47.056 110210 170670 1033.2 221830 478940 238680 164440 108510 112840 84374 181740 102630 159440 15265 222940 451390 239190 181640 116170 119500 83398 173180 1 1 1 1 1 1 1 1 1 1 1 110210 170670 1033.2 221830 478940 238680 164440 108510 112840 84374 181740 102630 159440 15265 222940 451390 239190 181640 116170 119500 83398 173180 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12896000 12896000 0 8061 641 7517 42882 51665 51665 1 HLETFEHPNVVR Unmodified 1476.7474 0.74736113 1469 Q00534 CDK6 Cyclin-dependent kinase 6 yes yes 0 0 0 0 By MS/MS By MS/MS 3.83 1.07 1 1 2 2 4 2 32.029 31.966 3;4 1.3659E-12 8070 20211116_3433_TMUAki_TMT10x_P_F5 176.78 156.57 7822200 12810000 70732 11312000 15787000 14254000 8424000 10185000 10191000 8508400 11002000 7282400 11947000 660900 11690000 14946000 14248000 8984600 10510000 10319000 8378800 10588000 8 8 4 8 8 8 8 8 8 8 8 6572600 10722000 66393 9759500 14411000 12895000 7117800 7834600 7974400 6866200 8999000 6118900 10001000 552860 10071000 13628000 12829000 7627700 8192100 8111500 6745800 8649300 5 5 3 5 5 5 5 5 5 5 5 1249600 2087700 4339.7 1552500 1376300 1359000 1306200 2350100 2217000 1642200 2003100 1163500 1946000 108040 1618700 1318100 1418700 1356800 2318200 2208000 1633100 1939000 3 3 1 3 3 3 3 3 3 3 3 1333400000 1206600000 126830000 8062 1469 7518 42883;42884;42885;42886;42887;42888 51666;51667;51668;51669;51670;51671;51672;51673 51670 8 HLFFTVPR Unmodified 1015.5603 0.56033563 3294 Q9Y4A5;Q9Y4A5-2 TRRAP Transformation/transcription domain-associated protein yes no 0 0 0 0 By MS/MS 3 0 1 1 48.378 48.33 3 0.002627 15332 20211116_3430_TMUAki_TMT10x_P_F3 84.498 60.974 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8063 3294 7519 42889 51674 51674 1 HLFGQPNSAYDFK Unmodified 1522.7205 0.72047768 423 O95347;O95347-2 SMC2 Structural maintenance of chromosomes protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 50.675 50.955 3 3.4091E-09 14003 20211116_3447_TMUAki_TMT10x_S_F8 124.38 102.75 34332000 58149000 361820 60053000 52924000 61077000 41416000 52991000 48990000 45395000 49964000 31969000 54266000 3410500 61145000 50476000 61976000 42846000 54058000 49542000 44648000 48168000 7 7 5 7 7 7 7 7 7 7 7 23019000 37110000 174460 38206000 40458000 50774000 32296000 34405000 31943000 29100000 31868000 21434000 34632000 2281800 39087000 38597000 50582000 33175000 35648000 32510000 28639000 30744000 5 5 3 5 5 5 5 5 5 5 5 11313000 21038000 187360 21847000 12465000 10303000 9119600 18586000 17047000 16296000 18096000 10535000 19634000 1128700 22058000 11880000 11394000 9670800 18410000 17033000 16009000 17424000 2 2 2 2 2 2 2 2 2 2 2 2245600000 1389000000 856620000 8064 423 7520 42890;42891;42892;42893 51675;51676;51677;51678;51679;51680;51681 51681 7 HLFLTSKPMVYLVNLSEK Oxidation (M) 2134.1496 0.14964771 2947 Q9NTK5;Q9NTK5-3;Q9NTK5-2 OLA1 Obg-like ATPase 1 yes no 0 0 1 1 By matching By MS/MS 4.33 0.471 2 1 1 2 65.491 65.482 4 4.9599E-12 19840 20211116_3444_TMUAki_TMT10x_S_F5 130.4 113.32 14510000 24195000 111580 23611000 15042000 15767000 16008000 12584000 15508000 15126000 16901000 13511000 22575000 1314400 24011000 14454000 16475000 16172000 13031000 15848000 14668000 16261000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14510000 24195000 111580 23611000 15042000 15767000 16008000 12584000 15508000 15126000 16901000 13511000 22575000 1314400 24011000 14454000 16475000 16172000 13031000 15848000 14668000 16261000 2 2 2 2 2 2 2 2 2 2 2 1717700000 436130000 1281600000 8065 2947 7521 42894;42895;42896 51682;51683 51683 3038 2 HLFLTSKPMVYLVNLSEK Unmodified 2118.1547 0.15473309 2947 Q9NTK5;Q9NTK5-3;Q9NTK5-2 OLA1 Obg-like ATPase 1 yes no 0 0 0 1 By MS/MS 6 0 1 1 75.884 75.839 4 1.2744E-12 24416 20211116_3445_TMUAki_TMT10x_S_F6 138.66 124.2 6069800 9492600 57079 9689900 7919300 4515000 6394900 3315500 2881200 3425700 5928900 5652000 8858300 582320 9794000 7558500 4891800 6457500 3434800 3193100 3341200 5625100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6069800 9492600 57079 9689900 7919300 4515000 6394900 3315500 2881200 3425700 5928900 5652000 8858300 582320 9794000 7558500 4891800 6457500 3434800 3193100 3341200 5625100 2 2 2 2 2 2 2 2 2 2 2 634630000 0 634630000 8066 2947 7521 42897 51684;51685 51684 2 HLGAVNTIVFVDENRR Unmodified 1838.9751 0.97512924 273 O60508 CDC40 Pre-mRNA-processing factor 17 yes yes 0 0 0 1 By MS/MS By MS/MS 7.25 0.433 3 1 1 3 44.343 44.676 3;4 3.137E-29 13648 20211116_3446_TMUAki_TMT10x_S_F7 190.86 168.66 2042800 3047100 64359 3886200 3890800 3993900 2535100 2601900 2466800 2307200 2832900 1902500 2846400 247710 3906900 3700000 4030800 2640200 2706900 2525500 2265500 2721500 2 2 1 2 2 2 2 2 2 2 2 1564300 2302400 64359 2916600 3458400 3609200 2171600 2027900 1794400 1706100 2093300 1457000 2150700 216200 2942400 3287600 3598600 2258400 2132000 1852600 1679500 2010100 1 1 1 1 1 1 1 1 1 1 1 478470 744710 0 969560 432420 384710 363460 574050 672360 601150 739620 445440 695730 31506 964490 412400 432250 381840 574910 672880 586000 711410 1 1 0 1 1 1 1 1 1 1 1 605430000 392420000 213010000 8067 273 7522 42898;42899;42900;42901 51686;51687;51688 51687 3 HLGGIPWTYAEDAVPTLTPCR Unmodified 2353.1525 0.15250126 891 P31930 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 72.386 72.323 3 1.9734E-10 23335 20211116_3436_TMUAki_TMT10x_P_F8 112.74 102.78 15543000 25942000 309690 24521000 16185000 26229000 18840000 15031000 14654000 16055000 18760000 14474000 24202000 1563300 25141000 15603000 26364000 18841000 15878000 15237000 15638000 17970000 5 5 4 5 5 5 5 5 5 5 5 11583000 18440000 188570 17810000 11324000 21354000 14266000 10954000 10179000 11349000 13176000 10786000 17204000 1109500 18266000 10942000 21302000 14190000 11674000 10641000 11068000 12618000 4 4 3 4 4 4 4 4 4 4 4 3960000 7502800 121120 6711000 4860400 4875300 4573400 4077500 4474400 4705900 5583900 3688100 6997900 453800 6874800 4660500 5062000 4650900 4204800 4595600 4570100 5352200 1 1 1 1 1 1 1 1 1 1 1 1544100000 559980000 984120000 8068 891 7523 42902;42903 51689;51690;51691;51692;51693 51692 5 HLGVCISVANNR Unmodified 1338.6827 0.68265239 211 O43390;O43390-2;O43390-3;O43390-4 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 0 By MS/MS By MS/MS 5.2 2.44 2 2 2 2 1 3 3 5 10 10 35.588 35.785 3 3.1726E-12 8866 20211116_3431_TMUAki_TMT10x_P_F4 170.89 0 4265400 7187300 68142 7311100 6509200 6972800 5428700 5415000 5001700 4484600 6015600 3972000 6707000 435010 7444700 6217400 7089300 5549900 5556400 5143000 4418200 5771700 15 15 12 15 15 15 15 15 15 15 15 2445800 4016200 36767 4106100 4602100 5281200 3284700 3386000 2906900 2583100 3535300 2277500 3747900 261820 4200100 4381500 5265100 3389000 3514300 2996100 2555900 3390900 7 7 6 7 7 7 7 7 7 7 7 1819700 3171100 31374 3205100 1907000 1691600 2144100 2028900 2094700 1901500 2480300 1694500 2959100 173190 3244700 1835900 1824300 2160900 2042000 2146900 1862300 2380700 8 8 6 8 8 8 8 8 8 8 8 1150500000 532870000 617610000 8069 211 7524 42904;42905;42906;42907;42908;42909;42910;42911;42912;42913;42914;42915;42916;42917;42918;42919;42920;42921;42922;42923 51694;51695;51696;51697;51698;51699;51700;51701;51702;51703;51704;51705;51706;51707;51708;51709;51710;51711;51712 51697 19 HLHPIQTSFQEATASK Unmodified 1793.906 0.90604662 2286 Q8TEM1 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 4 1 39.091 39.354 3;4 3.6832E-22 10851 20211116_3435_TMUAki_TMT10x_P_F7 157.07 136.48 2564900 4383200 52325 4608000 4777800 5140000 3347200 3897200 3787900 3300700 3853300 2388500 4090800 289930 4693000 4548200 5175500 3483700 4007300 3836500 3248200 3715100 7 7 5 7 7 7 7 7 7 7 7 1795500 3015200 40083 3155700 4025700 4425700 2628600 2681400 2587400 2227800 2661600 1672000 2814000 215560 3228400 3827200 4391100 2738000 2800700 2636700 2194500 2565200 5 5 4 5 5 5 5 5 5 5 5 769410 1368000 12242 1452300 752120 714250 718640 1215800 1200500 1072900 1191700 716480 1276800 74369 1464600 721030 784430 745610 1206600 1199900 1053700 1149800 2 2 1 2 2 2 2 2 2 2 2 337690000 267080000 70611000 8070 2286 7525 42924;42925;42926;42927;42928 51713;51714;51715;51716;51717;51718;51719;51720 51716 8 HLIEQDFPGMR Oxidation (M) 1357.6449 0.6448699 2809 Q9H4M9 EHD1 EH domain-containing protein 1 yes yes 0 0 1 0 By MS/MS By MS/MS 5 0.816 1 1 1 1 2 38.363 38.48 3 0.0072676 9753 20211116_3431_TMUAki_TMT10x_P_F4 61.165 55.987 1566800 2529100 73970 2936400 2375900 2315300 1580500 1908000 1952200 1714300 2288500 1459400 2361500 208780 2957600 2262500 2387800 1656300 1954700 1981700 1682200 2197300 3 3 2 3 3 3 3 3 3 3 3 933380 1535700 73895 1784900 1770800 1786800 1065600 1119600 1140000 1022000 1446100 869620 1433900 157980 1803300 1684600 1805100 1120100 1169100 1167400 1002200 1385500 1 1 1 1 1 1 1 1 1 1 1 633410 993460 75.521 1151600 605110 528540 514870 788370 812170 692240 842480 589760 927600 50806 1154300 577850 582710 536180 785570 814300 680040 811770 2 2 1 2 2 2 2 2 2 2 2 177020000 142830000 34185000 8071 2809 7526 42929;42930;42931 51721;51722;51723 51721 2960 3 HLILPEKYPPPTELLDLQPLPVSALR Unmodified 2948.6739 0.67391541 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 1 By MS/MS By MS/MS 3.43 1.92 2 4 1 1 6 71.92 71.854 4 7.4017E-12 26853 20211116_3429_TMUAki_TMT10x_P_F2 104.38 100.58 14127000 24272000 239280 20223000 16206000 22626000 18946000 13704000 14044000 15361000 17810000 13155000 22634000 1059100 20953000 15622000 22701000 18923000 14433000 14636000 14934000 17064000 9 9 5 9 9 9 9 9 9 9 9 6615400 11100000 107400 9120200 6646300 14114000 8206900 6469700 7105000 7407400 8117000 6160400 10350000 302210 9518600 6418500 13898000 8208900 6991700 7312300 7195800 7798900 2 2 1 2 2 2 2 2 2 2 2 7511600 13173000 131880 11103000 9559900 8512100 10739000 7234400 6939500 7954000 9693400 6994800 12284000 756920 11434000 9203000 8802700 10714000 7441400 7323700 7738700 9265600 7 7 4 7 7 7 7 7 7 7 7 8817800000 3725200000 5092500000 8072 352 7527 42932;42933;42934;42935;42936;42937;42938 51724;51725;51726;51727;51728;51729;51730;51731;51732 51724 9 HLIPAANTGESK Unmodified 1236.6463 0.64625011 1342 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 0 0 By MS/MS By MS/MS 4.25 1.42 1 1 1 1 7 1 5 7 30.157 30.157 2;3 2.5998E-22 8111 20211116_3433_TMUAki_TMT10x_P_F5 214.71 175.91 15176000 26145000 101950 23368000 25741000 21723000 19684000 12722000 13553000 12897000 19162000 14131000 24386000 1483600 24011000 24535000 22030000 20093000 13395000 14255000 12589000 18311000 9 9 4 9 9 9 9 9 9 9 9 8832300 15047000 76149 12918000 18066000 16030000 10931000 7391000 7619900 7433400 10796000 8224300 14032000 924500 13376000 17147000 15944000 11358000 7951900 8009500 7258100 10317000 3 3 2 3 3 3 3 3 3 3 3 6344100 11098000 25804 10450000 7675200 5693700 8753400 5331400 5933100 5464100 8365200 5907100 10353000 559060 10635000 7387600 6085500 8735300 5442900 6245600 5331000 7994300 6 6 2 6 6 6 6 6 6 6 6 2966600000 2120200000 846420000 8073 1342 7528 42939;42940;42941;42942;42943;42944;42945;42946;42947;42948;42949;42950 51733;51734;51735;51736;51737;51738;51739;51740;51741;51742;51743 51736 11 HLIVLINK Unmodified 948.61204 0.61203685 681 P15170-3;P15170-2;P15170;Q8IYD1 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes no 0 0 0 0 By MS/MS By MS/MS 3 0.707 1 2 1 3 1 49.783 49.648 3 0.0026902 15468 20211116_3429_TMUAki_TMT10x_P_F2 84.244 46.516 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8074 681 7529 42951;42952;42953;42954 51744;51745;51746;51747 51744 4 HLLEGQNASVLAYGPTGAGK Unmodified 1982.0221 0.022139011 1734 Q14807;Q14807-2 KIF22 Kinesin-like protein KIF22 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 52.077 52.376 3 4.182E-18 14574 20211116_3447_TMUAki_TMT10x_S_F8 141.6 123.51 8313200 13483000 138200 16317000 12950000 16504000 9649500 12155000 12580000 11672000 14271000 7741300 12591000 855760 16449000 12341000 16704000 10051000 12563000 12730000 11420000 13715000 6 6 5 6 6 6 6 6 6 6 6 5534600 8842600 120410 10653000 10138000 14068000 7586900 8192000 8400500 7852500 9612000 5154200 8257900 635540 10791000 9663800 13988000 7854300 8615400 8553400 7683200 9234800 4 4 4 4 4 4 4 4 4 4 4 2778600 4640100 17799 5663800 2812000 2436200 2062600 3962900 4179400 3819900 4659400 2587100 4333500 220210 5657500 2676800 2715200 2196900 3947900 4176200 3736600 4479900 2 2 1 2 2 2 2 2 2 2 2 983500000 506330000 477170000 8075 1734 7530 42955;42956;42957;42958 51748;51749;51750;51751;51752;51753 51753 6 HLLGAEHGDEPR Unmodified 1329.6426 0.64256171 2682 Q9BV38 WDR18 WD repeat-containing protein 18 yes yes 0 0 0 0 By MS/MS 3 0 2 2 28.883 28.61 3;4 0.00018924 8587 20211116_3441_TMUAki_TMT10x_S_F3 84.954 74.722 185680 306000 9105.9 285130 212560 219170 240950 185160 210320 196410 242320 172930 285450 20173 291370 204810 226580 241970 190310 216440 191360 232770 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 185680 306000 9105.9 285130 212560 219170 240950 185160 210320 196410 242320 172930 285450 20173 291370 204810 226580 241970 190310 216440 191360 232770 2 2 1 2 2 2 2 2 2 2 2 19240000 0 19240000 8076 2682 7531 42959;42960 51754;51755 51755 2 HLLGEIR Unmodified 836.48684 0.48683634 2439 Q96EA4;Q96EA4-3;Q96EA4-2 SPDL1 Protein Spindly yes no 0 0 0 0 By matching By MS/MS 5 0 2 1 1 33.491 33.552 3 0.042998 6974 20211116_3444_TMUAki_TMT10x_S_F5 50.898 0 64289 103310 0 116350 143840 147760 73061 61927 177670 164220 71909 59854 96452 5784.2 118250 136100 146660 81048 70357 172420 156170 72642 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 64289 103310 0 116350 143840 147760 73061 61927 177670 164220 71909 59854 96452 5784.2 118250 136100 146660 81048 70357 172420 156170 72642 1 1 0 1 1 1 1 1 1 1 1 33051000 15788000 17264000 8077 2439 7532 42961;42962 51756 51756 1 HLLGVEDLLQK Unmodified 1263.7187 0.71868677 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 63.629 63.905 3 1.8431E-06 21465 20211116_3446_TMUAki_TMT10x_S_F7 120.63 57.151 18588000 30455000 288730 31182000 21901000 29310000 19983000 19972000 20443000 20943000 23010000 17309000 28420000 1856500 31731000 20969000 29765000 20384000 20807000 20868000 20414000 22117000 5 5 5 5 5 5 5 5 5 5 5 11587000 18172000 165620 19204000 14578000 22274000 13357000 11673000 11719000 12101000 13733000 10790000 16960000 1156900 19564000 13958000 22264000 13562000 12416000 12065000 11801000 13186000 3 3 3 3 3 3 3 3 3 3 3 7000300 12283000 123110 11978000 7322900 7035900 6626000 8299400 8724400 8842500 9276400 6518900 11461000 699620 12167000 7011500 7501000 6822400 8390700 8803300 8613700 8931500 2 2 2 2 2 2 2 2 2 2 2 2088600000 1117300000 971370000 8078 1475 7533 42963;42964;42965;42966 51757;51758;51759;51760;51761 51761 5 HLLIGVSSDR Unmodified 1095.6037 0.60365701 949;950 P36542;P36542-2 ATP5C1 ATP synthase subunit gamma, mitochondrial no no 0 0 0 0 By MS/MS By MS/MS 6.5 1.5 1 2 3 2 6 2 35.088 35.293 2;3 0.00043918 9440 20211116_3435_TMUAki_TMT10x_P_F7 108.98 66.513 1969400 3056500 13875 3227600 2236300 2640900 2130900 1743000 1846700 1908400 2304800 1833800 2852700 177250 3271800 2142300 2706400 2158200 1822500 1907400 1857100 2209200 6 6 4 6 6 6 6 6 6 6 6 1200800 1849400 1826.6 1936900 1554700 1990200 1298100 950240 1013800 1088200 1363000 1118100 1726000 103520 1970500 1484200 2000800 1321300 1022800 1056200 1057100 1304000 4 4 2 4 4 4 4 4 4 4 4 768560 1207100 12048 1290700 681570 650780 832810 792800 832900 820210 941820 715690 1126700 73729 1301300 658050 705640 836850 799720 851190 799930 905170 2 2 2 2 2 2 2 2 2 2 2 126670000 103620000 23047000 8079 949;950 7534 42967;42968;42969;42970;42971;42972;42973;42974 51762;51763;51764;51765;51766;51767 51764 6 HLLLVDPEGVVR Unmodified 1345.7718 0.77178497 850 P29353;P29353-2;P29353-3;P29353-7;P29353-6 SHC1 SHC-transforming protein 1 no no 0 0 0 0 By MS/MS 5 0 1 1 53.929 54.11 3 0.025255 15197 20211116_3444_TMUAki_TMT10x_S_F5 54.65 33.749 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8080 850 7535 42975 51768 51768 1 HLLNQAVGEEEVPK Unmodified 1561.81 0.81002097 2774 Q9H0G5 NSRP1 Nuclear speckle splicing regulatory protein 1 yes yes 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 43.409 43.353 3 2.7382E-06 12068 20211116_3442_TMUAki_TMT10x_S_F4 105.14 88.52 2068900 3356300 42336 4181400 1837100 1873900 1611700 3334500 3295000 2823100 3075900 1926700 3134800 207740 4173000 1758400 2084100 1698700 3301300 3270700 2778200 2974000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2068900 3356300 42336 4181400 1837100 1873900 1611700 3334500 3295000 2823100 3075900 1926700 3134800 207740 4173000 1758400 2084100 1698700 3301300 3270700 2778200 2974000 3 3 3 3 3 3 3 3 3 3 3 105190000 0 105190000 8081 2774 7536 42976;42977 51769;51770;51771 51770 3 HLLNSPTDPFNR Unmodified 1409.7052 0.70516197 405 O95155;O95155-2;O95155-4;O95155-3 UBE4B Ubiquitin conjugation factor E4 B yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 43.269 43.783 3 4.2617E-06 13212 20211116_3446_TMUAki_TMT10x_S_F7 108.56 91.352 2710000 4238100 77932 4304300 4090000 4371400 3190100 3230000 3009400 3014900 3775300 2523500 3954800 271300 4387400 3900900 4423500 3277300 3335200 3096700 2953400 3618200 2 2 1 2 2 2 2 2 2 2 2 1602900 2347000 77932 2397200 2892400 3397900 2005700 1903600 1774800 1767200 2245500 1493000 2190200 223580 2457000 2755800 3366300 2073700 2006700 1832400 1731600 2151600 1 1 1 1 1 1 1 1 1 1 1 1107200 1891100 0 1907100 1197600 973480 1184400 1326500 1234600 1247700 1529800 1030500 1764700 47721 1930400 1145000 1057200 1203600 1328500 1264300 1221800 1466600 1 1 0 1 1 1 1 1 1 1 1 490320000 346740000 143580000 8082 405 7537 42978;42979;42980 51772;51773;51774 51774 3 HLLNVINENFGTLAFCR Unmodified 2017.0204 0.020364872 1141 P50579;P50579-3;P50579-2 METAP2 Methionine aminopeptidase 2 yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 75.769 75.789 3 5.1951E-08 25260 20211116_3433_TMUAki_TMT10x_P_F5 114.63 96.489 17404000 29721000 1035200 27185000 25443000 25419000 23592000 14575000 12248000 15363000 20773000 16212000 27724000 2520300 27886000 24412000 25760000 23676000 15389000 13259000 14972000 19775000 5 5 5 5 5 5 5 5 5 5 5 8196600 14176000 457090 13194000 9939100 16514000 11780000 7734300 6742300 8184500 9580200 7635300 13224000 1130000 13579000 9604000 16421000 11696000 8320300 7180200 7974800 9153800 3 3 3 3 3 3 3 3 3 3 3 9207200 15545000 578130 13991000 15504000 8905000 11812000 6840400 5505700 7178900 11193000 8577100 14499000 1390300 14307000 14808000 9339100 11979000 7069200 6078900 6997300 10622000 2 2 2 2 2 2 2 2 2 2 2 429570000 227670000 201900000 8083 1141 7538 42981;42982 51775;51776;51777;51778;51779 51775 5 HLLPVETQR Unmodified 1091.6087 0.60874239 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 32.758 32.853 3 1.0558E-05 8073 20211116_3433_TMUAki_TMT10x_P_F5 106.6 79.27 720490 1163300 24784 1312500 1575400 1304000 1008500 748970 735920 622230 1015700 671030 1086000 94804 1328300 1497800 1316500 1044200 785710 770530 612930 971170 2 2 2 2 2 2 2 2 2 2 2 564640 883460 21193 1014200 1394100 1151500 811190 600310 586000 467980 813410 525890 824850 78181 1027500 1323400 1152200 846330 634210 614080 462510 777620 1 1 1 1 1 1 1 1 1 1 1 155850 279830 3591.1 298270 181250 152450 197330 148650 149920 154250 202320 145140 261180 16624 300800 174410 164220 197850 151500 156450 150420 193550 1 1 1 1 1 1 1 1 1 1 1 98182000 73485000 24697000 8084 1695 7539 42983;42984;42985 51780;51781;51782 51781 3 HLLQAPLDDAQEILQAR Unmodified 1930.0272 0.027224389 1809 Q15437 SEC23B Protein transport protein Sec23B yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 68.743 68.792 3 2.0969E-15 22082 20211116_3431_TMUAki_TMT10x_P_F4 144.15 131.52 17091000 27434000 0 25937000 18573000 21180000 18085000 16512000 17462000 16704000 20061000 15912000 25593000 1265100 26495000 17785000 21765000 18351000 17030000 17885000 16306000 19271000 4 4 0 4 4 4 4 4 4 4 4 4336600 6189100 0 6076900 4936100 8135900 4523900 4259200 4728600 4388200 4656200 4037700 5774700 354420 6238100 4721700 8074200 4616700 4530000 4799100 4280400 4493900 1 1 0 1 1 1 1 1 1 1 1 12755000 21245000 0 19860000 13637000 13044000 13561000 12253000 12734000 12316000 15404000 11875000 19819000 910670 20257000 13063000 13691000 13734000 12500000 13085000 12026000 14777000 3 3 0 3 3 3 3 3 3 3 3 1091100000 466610000 624450000 8085 1809 7540 42986;42987 51783;51784;51785;51786 51783 4 HLLQAPVDDAQEILHSR Unmodified 1941.0068 0.0068232975 1808 Q15436;Q15436-2 SEC23A Protein transport protein Sec23A yes no 0 0 0 0 By MS/MS By MS/MS 4.3 0.9 2 4 3 1 6 4 53.68 53.735 3;4 8.0613E-12 16360 20211116_3442_TMUAki_TMT10x_S_F4 139.04 128.84 42028000 67119000 352050 56059000 58471000 76057000 47444000 94813000 91865000 73801000 70269000 39128000 62587000 2751700 58270000 55751000 76670000 50076000 94824000 90746000 72944000 68454000 9 9 5 9 9 9 9 9 9 9 9 20342000 28298000 115550 24370000 34922000 51878000 26552000 37957000 38784000 31328000 32882000 18938000 26390000 1192800 25550000 33255000 50840000 27749000 39096000 38712000 30869000 31903000 5 5 2 5 5 5 5 5 5 5 5 21686000 38821000 236500 31689000 23549000 24179000 20892000 56857000 53080000 42473000 37387000 20190000 36197000 1558800 32720000 22496000 25829000 22327000 55728000 52035000 42074000 36551000 4 4 3 4 4 4 4 4 4 4 4 5216900000 2970200000 2246700000 8086 1808 7541 42988;42989;42990;42991;42992;42993;42994;42995;42996;42997 51787;51788;51789;51790;51791;51792;51793;51794;51795 51792 9 HLLQGDFPR Unmodified 1081.5669 0.56687757 2024 Q6UWP7;Q6UWP7-3 LCLAT1 Lysocardiolipin acyltransferase 1 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 3 1 2 37.565 37.65 3 0.00047435 8286 20211116_3445_TMUAki_TMT10x_S_F6 84.615 64.06 671540 1042600 11576 1126200 893940 1082600 948280 745000 820850 703680 861290 625330 973150 65862 1142300 858970 1097900 955090 773270 842090 688960 829610 3 3 2 3 3 3 3 3 3 3 3 312160 450520 8730 517800 643710 653470 474240 397430 390350 305150 403460 290710 420630 38659 525510 613480 651590 487310 414240 401250 301830 388800 1 1 1 1 1 1 1 1 1 1 1 359390 592060 2846.2 608360 250230 429080 474040 347570 430510 398530 457830 334620 552520 27203 616800 245490 446340 467790 359030 440840 387130 440810 2 2 1 2 2 2 2 2 2 2 2 72579000 41553000 31026000 8087 2024 7542 42998;42999;43000 51796;51797;51798;51799 51799 4 HLLSLMGIPYLDAPSEAEASCAALVK Oxidation (M) 2771.3874 0.38738815 978 P39748;P39748-2 FEN1 Flap endonuclease 1 yes no 0 0 1 0 By MS/MS By MS/MS 7.75 0.433 1 3 1 3 77.403 77.395 3;4 4.2418E-12 27188 20211116_3446_TMUAki_TMT10x_S_F7 104.67 90.055 10934000 18867000 118200 15158000 14249000 19557000 15153000 15193000 14504000 16035000 14758000 10181000 17591000 842530 15791000 13687000 19554000 15303000 15693000 14792000 15626000 14228000 5 5 3 5 5 5 5 5 5 5 5 3268900 5285700 0 4134900 3085100 8353200 4304700 5575000 5373700 5595800 4807100 3043000 4927800 47895 4362600 2983600 8187000 4335800 5809100 5399900 5464300 4654700 2 2 0 2 2 2 2 2 2 2 2 7664900 13581000 118200 11023000 11164000 11204000 10848000 9618300 9130000 10440000 9950700 7137700 12663000 794630 11428000 10703000 11367000 10967000 9883900 9392500 10162000 9573700 3 3 3 3 3 3 3 3 3 3 3 4696000000 988690000 3707300000 8088 978 7543 43001;43002;43003;43004 51800;51801;51802;51803;51804 51802 1252 5 HLLSLMGIPYLDAPSEAEASCAALVK Unmodified 2755.3925 0.39247353 978 P39748;P39748-2 FEN1 Flap endonuclease 1 yes no 0 0 0 0 By MS/MS 8 0 1 1 78.961 78.932 3 1.9884E-06 25366 20211116_3447_TMUAki_TMT10x_S_F8 80.683 67.754 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8089 978 7543 43005 51805 51805 1 HLLVPER Unmodified 862.50249 0.5024864 941 P35658;P35658-3;P35658-4;P35658-2;P35658-5 NUP214 Nuclear pore complex protein Nup214 yes no 0 0 0 0 By MS/MS 5 0 1 1 31.989 31.929 3 0.044586 7470 20211116_3433_TMUAki_TMT10x_P_F5 49.933 8.4309 181980 268160 1133.8 301220 466270 448000 249590 237930 227680 250830 232540 169450 250350 20125 307150 441710 442620 263820 252900 232750 244440 224180 1 1 1 1 1 1 1 1 1 1 1 181980 268160 1133.8 301220 466270 448000 249590 237930 227680 250830 232540 169450 250350 20125 307150 441710 442620 263820 252900 232750 244440 224180 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14634000 14634000 0 8090 941 7544 43006 51806 51806 1 HLLVSNVGGDGEEIER Unmodified 1722.8537 0.8536767 354 O75694;O75694-2 NUP155 Nuclear pore complex protein Nup155 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 1.11 1 2 1 2 2 4 40.609 40.542 3 5.0054E-15 10624 20211116_3431_TMUAki_TMT10x_P_F4 142.19 129.42 4469300 7906300 22312 7148500 9039100 10771000 6559300 8894100 9366500 8191100 8259800 4161100 7374600 403800 7400300 8602700 10707000 6869900 9116600 9366700 8028800 8002200 6 6 3 6 6 6 6 6 6 6 6 2916100 5021100 0 4606700 7064400 8705700 4835900 5692700 6065000 5291000 5371400 2714800 4683700 248330 4790100 6714300 8548200 5059900 5928000 6091700 5184000 5203000 3 3 0 3 3 3 3 3 3 3 3 1553200 2885200 22312 2541800 1974600 2065200 1723400 3201400 3301500 2900100 2888500 1446300 2690900 155470 2610200 1888400 2158900 1810100 3188600 3275000 2844800 2799200 3 3 3 3 3 3 3 3 3 3 3 845970000 519450000 326520000 8091 354 7545 43007;43008;43009;43010;43011;43012 51807;51808;51809;51810;51811;51812 51809 6 HLMLPDFDLLEDIESK Oxidation (M) 1929.9394 0.93938016 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 1 0 By MS/MS By MS/MS 2.69 1.61 4 5 3 2 1 1 7 9 72.398 72.36 2;3 1.2667E-10 27882 20211116_3439_TMUAki_TMT10x_S_F1 125.73 107.81 142510000 250530000 1314000 209530000 156700000 279800000 189160000 221320000 243090000 212110000 214610000 132700000 233620000 7614200 217700000 151100000 279390000 191840000 227690000 243930000 207530000 207910000 14 14 6 14 14 14 14 14 14 14 14 77919000 137900000 292810 116600000 67146000 180830000 94767000 116790000 128790000 111640000 122360000 72549000 128600000 3889000 121410000 65063000 178820000 95735000 121820000 129300000 109250000 118240000 8 8 3 8 8 8 8 8 8 8 8 64594000 112630000 1021200 92929000 89551000 98969000 94389000 104530000 114300000 100460000 92249000 60150000 105030000 3725100 96285000 86041000 100580000 96106000 105870000 114630000 98286000 89672000 6 6 3 6 6 6 6 6 6 6 6 43323000000 24842000000 18481000000 8092 648 7546 43013;43014;43015;43016;43017;43018;43019;43020;43021;43022;43023;43024;43025;43026;43027;43028 51813;51814;51815;51816;51817;51818;51819;51820;51821;51822;51823;51824;51825;51826;51827;51828;51829 51822 698 17 HLMLPDFDLLEDIESK Unmodified 1913.9445 0.94446554 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 By MS/MS 2 0 1 1 1.2704 1.1311 3 0.016963 365 20211116_3429_TMUAki_TMT10x_P_F2 47.545 36.105 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8093 648 7546 43029 51830 51830 1 HLMTLVMDPLQTASVQWFER 2 Oxidation (M) 2433.1821 0.18208683 875 P30566;P30566-2 ADSL Adenylosuccinate lyase yes no 0 0 2 0 By MS/MS 8 0 1 1 74.364 74.386 3 6.3887E-05 24098 20211116_3436_TMUAki_TMT10x_P_F8 70.114 61.583 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8094 875 7547 43030 51831 51831 1047;1048 1 HLNDLLEDR Unmodified 1123.5622 0.56218613 416 O95239;O95239-2;Q2VIQ3 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 0 0 0 0 By MS/MS 3 0 1 1 40.378 40.433 3 0.075686 12095 20211116_3430_TMUAki_TMT10x_P_F3 43.958 29.291 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8095 416 7548 43031 51832 51832 1 HLNEIDLFHCIDPNDSK Unmodified 2065.9527 0.95273882 1778 Q15185;Q15185-3;Q15185-4 PTGES3 Prostaglandin E synthase 3 yes no 0 0 0 0 By MS/MS By MS/MS 4.12 1.45 1 3 4 8 5 4 1 13 13 61.13 61.111 2;3;4 7.9073E-36 18445 20211116_3431_TMUAki_TMT10x_P_F4 211.83 194.09 186730000 339140000 3016500 344740000 220920000 341210000 226230000 229580000 195060000 190250000 252810000 173880000 316470000 17633000 351240000 212070000 345310000 228230000 237880000 201850000 187420000 242090000 33 33 24 33 33 33 33 33 33 33 33 109310000 199500000 1223000 196680000 133060000 249520000 145090000 131970000 119270000 111720000 147180000 101780000 186140000 9518200 201640000 127890000 248300000 145750000 139510000 123460000 109940000 141110000 19 19 12 19 19 19 19 19 19 19 19 77424000 139640000 1793500 148060000 87868000 91682000 81137000 97612000 75787000 78530000 105640000 72101000 130330000 8114600 149610000 84183000 97010000 82487000 98375000 78394000 77483000 100980000 14 14 12 14 14 14 14 14 14 14 14 87520000000 43101000000 44419000000 8096 1778 7549 43032;43033;43034;43035;43036;43037;43038;43039;43040;43041;43042;43043;43044;43045;43046;43047;43048;43049;43050;43051;43052;43053;43054;43055;43056;43057 51833;51834;51835;51836;51837;51838;51839;51840;51841;51842;51843;51844;51845;51846;51847;51848;51849;51850;51851;51852;51853;51854;51855;51856;51857;51858;51859;51860;51861;51862;51863;51864;51865;51866;51867 51842 35 HLPGAFFLGAER Unmodified 1313.6881 0.68805534 2951 Q9NUD5;Q9NUD5-2 ZCCHC3 Zinc finger CCHC domain-containing protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 55.619 55.564 3 5.3014E-06 16265 20211116_3428_TMUAki_TMT10x_P_F1 105.17 82.939 4976500 7980100 63847 8765200 7083100 9036400 5966800 6661300 6434500 6167800 6476600 4634000 7449200 480940 8890500 6766100 9135600 6125300 6877900 6527100 6044100 6246500 5 5 4 5 5 5 5 5 5 5 5 3313300 5214500 30019 5597600 5288700 7341600 4266500 4351500 4159500 4006300 4105300 3085100 4867100 309680 5709500 5045800 7304300 4377800 4564800 4234400 3926900 3961900 3 3 2 3 3 3 3 3 3 3 3 1663200 2765500 33828 3167600 1794500 1694900 1700300 2309900 2275000 2161500 2371300 1548900 2582000 171260 3181000 1720300 1831300 1747400 2313000 2292700 2117100 2284600 2 2 2 2 2 2 2 2 2 2 2 872680000 542530000 330150000 8097 2951 7550 43058;43059;43060;43061 51868;51869;51870;51871;51872 51868 5 HLPNDPMFK Oxidation (M) 1113.5277 0.52771487 330 O75390 CS Citrate synthase, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 5.62 0.857 1 2 4 1 5 3 34.449 34.619 3 0.00092664 8461 20211116_3444_TMUAki_TMT10x_S_F5 84.213 70.006 6376400 9978400 17280 10793000 8305100 6647900 6522300 5546900 5914600 4827000 7600800 5936800 9313900 518810 10891000 7916100 7003400 6690200 5673700 6103500 4743900 7280100 9 9 5 9 9 9 9 9 9 9 9 2247000 3226300 6427.2 3586200 4348800 3415100 2287400 2095500 2027300 1745200 2631300 2092200 3011800 213020 3630500 4117800 3460000 2419900 2186700 2095300 1718900 2519700 3 3 2 3 3 3 3 3 3 3 3 4129400 6752100 10853 7206800 3956300 3232800 4234900 3451400 3887300 3081800 4969500 3844600 6302100 305800 7260600 3798300 3543400 4270300 3487100 4008200 3025000 4760400 6 6 3 6 6 6 6 6 6 6 6 717960000 528880000 189080000 8098 330 7551 43062;43063;43064;43065;43066;43067;43068;43069 51873;51874;51875;51876;51877;51878;51879;51880;51881;51882;51883 51880 239 11 HLPNDPMFK Unmodified 1097.5328 0.53280025 330 O75390 CS Citrate synthase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 43.175 43.375 3 0.00026079 11093 20211116_3445_TMUAki_TMT10x_S_F6 114.5 92.41 6059500 9186000 23872 11937000 8460900 6029600 6156100 4454500 4063700 3890900 7228000 5642100 8581800 547130 11895000 8055500 6471500 6300100 4591700 4338000 3823300 6874600 5 5 2 5 5 5 5 5 5 5 5 2866400 4147500 23872 5533500 5789600 3971200 3387400 1982300 1868300 1716700 3237000 2669000 3875200 300830 5523800 5492400 4097300 3514500 2107900 2015700 1687600 3080200 2 2 2 2 2 2 2 2 2 2 2 3193200 5038600 0 6403400 2671200 2058400 2768700 2472200 2195500 2174200 3991000 2973100 4706600 246290 6371100 2563000 2374300 2785600 2483800 2322300 2135700 3794400 3 3 0 3 3 3 3 3 3 3 3 836150000 456170000 379980000 8099 330 7551 43070;43071;43072;43073;43074 51884;51885;51886;51887;51888 51887 5 HLPSTEPDPHVVR Unmodified 1482.7579 0.75792582 2675 Q9BUJ2;Q9BUJ2-4;Q9BUJ2-2 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 31.167 31.105 3;4 1.1135E-09 6798 20211116_3431_TMUAki_TMT10x_P_F4 136.7 126.09 1069400 1803000 14597 1961900 2153800 2175300 1453200 1691400 2255700 1654500 1759800 995790 1683000 112980 1993400 2048100 2192000 1535600 1743000 2242100 1617400 1713000 4 4 2 4 4 4 4 4 4 4 4 567790 978080 7296.8 1087300 1549100 1657000 834090 930300 1307100 927670 955560 528700 913060 64900 1110000 1467600 1636600 898080 982460 1296600 906120 932670 2 2 1 2 2 2 2 2 2 2 2 501610 824950 7300.5 874620 604720 518270 619150 761050 948610 726810 804230 467090 769950 48076 883420 580520 555410 637480 760510 945510 711250 780280 2 2 1 2 2 2 2 2 2 2 2 259270000 148700000 110570000 8100 2675 7552 43075;43076;43077 51889;51890;51891;51892 51889 4 HLQDLMEGLTAK Oxidation (M) 1370.6864 0.68640036 624 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 1 0 By MS/MS By MS/MS 5.33 0.471 4 2 3 3 45.639 45.762 3 0.0010573 12089 20211116_3445_TMUAki_TMT10x_S_F6 70.563 37.29 7299900 9096000 49746 11082000 11823000 13022000 7511900 7818300 7024600 6582400 9999500 6797300 8495000 706480 11194000 11231000 13029000 7830000 8174700 7273300 6479600 9554100 3 3 2 3 3 3 3 3 3 3 3 7299900 9096000 49746 11082000 11823000 13022000 7511900 7818300 7024600 6582400 9999500 6797300 8495000 706480 11194000 11231000 13029000 7830000 8174700 7273300 6479600 9554100 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 545790000 403450000 142350000 8101 624 7553 43078;43079;43080;43081;43082;43083 51893;51894;51895;51896;51897;51898 51898 637 6 HLQDLMEGLTAK Unmodified 1354.6915 0.69148574 624 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 62.414 62.999 3 0.00012639 20576 20211116_3435_TMUAki_TMT10x_P_F7 90.861 44.702 20798000 33503000 160550 37992000 25017000 24094000 23349000 13558000 11510000 14539000 22977000 19366000 31279000 1906100 38234000 23953000 25166000 23405000 14346000 12634000 14160000 21810000 4 4 3 4 4 4 4 4 4 4 4 10021000 15812000 56600 17937000 14583000 16558000 13119000 6708500 5716900 7357000 10658000 9330500 14763000 920550 18128000 13948000 16731000 13154000 7337200 6315200 7158500 10128000 2 2 1 2 2 2 2 2 2 2 2 10777000 17691000 103950 20056000 10433000 7536700 10230000 6849400 5793000 7182400 12319000 10035000 16516000 985540 20106000 10005000 8434600 10250000 7008600 6319100 7001000 11682000 2 2 2 2 2 2 2 2 2 2 2 1032700000 499230000 533440000 8102 624 7553 43084;43085;43086 51899;51900;51901;51902;51903 51900 5 HLQELVGQETLPR Unmodified 1518.8154 0.8154407 2318 Q8WX92;Q8WX92-2 NELFB Negative elongation factor B yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 44.458 44.613 3 7.7321E-12 12220 20211116_3431_TMUAki_TMT10x_P_F4 148.89 127.52 4118700 6636000 58592 7742800 5493500 5294500 4467500 4922400 5267800 4731300 5761800 3835200 6196200 388220 7784200 5243400 5536400 4610000 5017800 5341600 4628700 5542900 3 3 2 3 3 3 3 3 3 3 3 1631100 2341900 37797 2755200 3041900 3186900 2040500 1837600 1992700 1755300 2129700 1519000 2186800 190210 2788000 2893800 3189600 2120600 1934000 2034100 1717700 2050200 1 1 1 1 1 1 1 1 1 1 1 2487700 4294000 20795 4987700 2451600 2107700 2427000 3084800 3275100 2976000 3632100 2316200 4009400 198010 4996200 2349600 2346800 2489300 3083800 3307400 2911000 3492700 2 2 1 2 2 2 2 2 2 2 2 580520000 245250000 335270000 8103 2318 7554 43087;43088;43089;43090 51904;51905;51906;51907 51904 4 HLQGGEK Unmodified 767.3926 0.3926016 2181 Q8N163;Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 0 By MS/MS 3 0 1 1 26.157 25.86 3 0.10091 7469 20211116_3441_TMUAki_TMT10x_S_F3 29.376 12.865 181750 287300 0 245850 184050 174630 196800 165350 141410 158800 186900 169170 267930 8139.7 252670 176340 182090 197240 168390 147900 155360 178890 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 181750 287300 0 245850 184050 174630 196800 165350 141410 158800 186900 169170 267930 8139.7 252670 176340 182090 197240 168390 147900 155360 178890 1 1 0 1 1 1 1 1 1 1 1 667670 0 667670 8104 2181 7555 43091 51908 51908 1 HLQINQTFEELR Unmodified 1526.7841 0.78414057 1009 P42229;P51692;P42229-2 STAT5A;STAT5B Signal transducer and activator of transcription 5A;Signal transducer and activator of transcription 5B yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 48.254 48.426 3 4.6095E-05 14000 20211116_3433_TMUAki_TMT10x_P_F5 98.407 72.364 2571800 4298800 99964 4613400 3846000 4040500 2866500 3691700 3903300 3058100 3622200 2395400 4012500 324230 4675600 3669200 4143700 2991000 3752100 3915600 3012800 3502900 2 2 2 2 2 2 2 2 2 2 2 1272400 2018800 84380 2265000 2649000 2926400 1772400 1746100 1771300 1381300 1658000 1185300 1884700 203410 2303100 2523100 2913900 1843600 1823900 1798000 1364100 1602900 1 1 1 1 1 1 1 1 1 1 1 1299500 2280100 15584 2348400 1197000 1114100 1094200 1945600 2132000 1676800 1964200 1210000 2127800 120820 2372500 1146100 1229800 1147400 1928200 2117600 1648700 1900000 1 1 1 1 1 1 1 1 1 1 1 246660000 155060000 91605000 8105 1009 7556 43092;43093 51909;51910 51909 2 HLQLAIR Unmodified 849.51847 0.51847082 592;690;2391;591 Q6FI13;P0C0S8;Q99878;Q9BTM1;Q16777;Q96KK5;P20671;Q9BTM1-2;P16104;Q93077;Q7L7L0;P04908;Q71UI9;P0C0S5;Q71UI9-3;Q71UI9-4;Q71UI9-2 HIST2H2AA3;HIST1H2AG;HIST1H2AJ;H2AFJ;HIST2H2AC;HIST1H2AH;HIST1H2AD;H2AFX;HIST1H2AC;HIST3H2A;HIST1H2AB;H2AFV;H2AFZ Histone H2A type 2-A;Histone H2A type 1;Histone H2A type 1-J;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-H;Histone H2A type 1-D;Histone H2AX;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A.V;Histone H2A.Z no no 0 0 0 0 By MS/MS By MS/MS 4.43 2.27 5 8 6 8 4 6 6 6 23 26 30.122 30.208 2;3 0.00020101 5680 20211116_3430_TMUAki_TMT10x_P_F3 193.7 75.642 208040000 343440000 482060 330480000 289250000 303930000 234550000 255030000 264010000 255020000 276890000 193690000 320420000 13390000 337660000 275850000 310160000 241680000 261760000 267760000 249060000 266710000 58 58 17 58 58 58 58 58 58 58 58 84546000 133660000 126040 129910000 167270000 182500000 99516000 104970000 105070000 102000000 106430000 78717000 124700000 5913000 133580000 158660000 180940000 104660000 110550000 106700000 99741000 102630000 22 22 7 22 22 22 22 22 22 22 22 123500000 209780000 356020 200570000 121980000 121430000 135030000 150060000 158940000 153020000 170470000 114970000 195710000 7476500 204080000 117190000 129230000 137030000 151220000 161060000 149320000 164090000 36 36 10 36 36 36 36 36 36 36 36 105540000000 59375000000 46161000000 8106 592;690;2391;591 7557 43094;43095;43096;43097;43098;43099;43100;43101;43102;43103;43104;43105;43106;43107;43108;43109;43110;43111;43112;43113;43114;43115;43116;43117;43118;43119;43120;43121;43122;43123;43124;43125;43126;43127;43128;43129;43130;43131;43132;43133;43134;43135;43136;43137;43138;43139;43140;43141;43142 51911;51912;51913;51914;51915;51916;51917;51918;51919;51920;51921;51922;51923;51924;51925;51926;51927;51928;51929;51930;51931;51932;51933;51934;51935;51936;51937;51938;51939;51940;51941;51942;51943;51944;51945;51946;51947;51948;51949;51950;51951;51952;51953;51954;51955;51956;51957;51958;51959;51960;51961;51962;51963;51964;51965;51966;51967;51968;51969;51970 51916 60 HLQLAIRGDEELDSLIK Unmodified 1949.0582 0.058190166 591 Q71UI9;P0C0S5;Q71UI9-3;Q71UI9-4;Q71UI9-2 H2AFV;H2AFZ Histone H2A.V;Histone H2A.Z yes no 0 0 0 1 By MS/MS By MS/MS 4.89 1.39 2 5 7 8 11 4 20 17 77.2 77.193 2;3;4 3.1102E-50 19562 20211116_3431_TMUAki_TMT10x_P_F4 225.72 192.86 300290000 485230000 2949100 489660000 370690000 505250000 373810000 373700000 360220000 358970000 393600000 279610000 452780000 27212000 499460000 355600000 510800000 378590000 386150000 368240000 351200000 378660000 50 50 27 50 50 50 50 50 50 50 50 175600000 276200000 2107000 284790000 208440000 369160000 232570000 216880000 209450000 208640000 230060000 163510000 257750000 16129000 291180000 200540000 367450000 233930000 227950000 214830000 204110000 221300000 29 29 18 29 29 29 29 29 29 29 29 124680000 209030000 842130 204880000 162250000 136090000 141240000 156820000 150770000 150330000 163530000 116090000 195030000 11083000 208270000 155060000 143350000 144660000 158200000 153410000 147080000 157360000 21 21 9 21 21 21 21 21 21 21 21 38065000000 19941000000 18123000000 8107 591 7558 43143;43144;43145;43146;43147;43148;43149;43150;43151;43152;43153;43154;43155;43156;43157;43158;43159;43160;43161;43162;43163;43164;43165;43166;43167;43168;43169;43170;43171;43172;43173;43174;43175;43176;43177;43178;43179 51971;51972;51973;51974;51975;51976;51977;51978;51979;51980;51981;51982;51983;51984;51985;51986;51987;51988;51989;51990;51991;51992;51993;51994;51995;51996;51997;51998;51999;52000;52001;52002;52003;52004;52005;52006;52007;52008;52009;52010;52011;52012;52013;52014;52015;52016;52017;52018;52019;52020 51985 50 HLQLAIRNDEELNK Unmodified 1691.8955 0.89548193 592;690;2391 Q6FI13;P0C0S8;Q99878;Q9BTM1;Q16777;Q96KK5;P20671;Q9BTM1-2;P16104;Q93077;Q7L7L0;P04908 HIST2H2AA3;HIST1H2AG;HIST1H2AJ;H2AFJ;HIST2H2AC;HIST1H2AH;HIST1H2AD;H2AFX;HIST1H2AC;HIST3H2A;HIST1H2AB Histone H2A type 2-A;Histone H2A type 1;Histone H2A type 1-J;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-H;Histone H2A type 1-D;Histone H2AX;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E no no 0 0 0 1 By MS/MS By MS/MS 5.23 1.64 4 4 8 15 19 32 21 3 42 64 40.272 40.384 2;3;4;5 4.6761E-83 10914 20211116_3433_TMUAki_TMT10x_P_F5 345.64 278.68 884020000 1337700000 12030000 1462400000 1466600000 1389000000 929100000 1105200000 1075500000 941840000 1157200000 823130000 1248600000 82862000 1482000000 1392900000 1413200000 975060000 1133100000 1090700000 926580000 1113800000 168 168 106 168 168 168 168 168 168 168 168 554630000 827160000 7979900 893750000 1048200000 1111800000 611160000 683220000 684140000 573460000 705810000 516430000 772080000 53224000 910330000 994190000 1109500000 645040000 713000000 693570000 564590000 680200000 72 72 49 72 72 72 72 72 72 72 72 329390000 510500000 4050300 568630000 418390000 277200000 317940000 421990000 391390000 368380000 451390000 306700000 476570000 29637000 571640000 398750000 303630000 330020000 420140000 397090000 361990000 433580000 96 96 57 96 96 96 96 96 96 96 96 367420000000 233570000000 133850000000 8108 592;690;2391 7559 43180;43181;43182;43183;43184;43185;43186;43187;43188;43189;43190;43191;43192;43193;43194;43195;43196;43197;43198;43199;43200;43201;43202;43203;43204;43205;43206;43207;43208;43209;43210;43211;43212;43213;43214;43215;43216;43217;43218;43219;43220;43221;43222;43223;43224;43225;43226;43227;43228;43229;43230;43231;43232;43233;43234;43235;43236;43237;43238;43239;43240;43241;43242;43243;43244;43245;43246;43247;43248;43249;43250;43251;43252;43253;43254;43255;43256;43257;43258;43259;43260;43261;43262;43263;43264;43265;43266;43267;43268;43269;43270;43271;43272;43273;43274;43275;43276;43277;43278;43279;43280;43281;43282;43283;43284;43285 52021;52022;52023;52024;52025;52026;52027;52028;52029;52030;52031;52032;52033;52034;52035;52036;52037;52038;52039;52040;52041;52042;52043;52044;52045;52046;52047;52048;52049;52050;52051;52052;52053;52054;52055;52056;52057;52058;52059;52060;52061;52062;52063;52064;52065;52066;52067;52068;52069;52070;52071;52072;52073;52074;52075;52076;52077;52078;52079;52080;52081;52082;52083;52084;52085;52086;52087;52088;52089;52090;52091;52092;52093;52094;52095;52096;52097;52098;52099;52100;52101;52102;52103;52104;52105;52106;52107;52108;52109;52110;52111;52112;52113;52114;52115;52116;52117;52118;52119;52120;52121;52122;52123;52124;52125;52126;52127;52128;52129;52130;52131;52132;52133;52134;52135;52136;52137;52138;52139;52140;52141;52142;52143;52144;52145;52146;52147;52148;52149;52150;52151;52152;52153;52154;52155;52156;52157;52158;52159;52160;52161;52162;52163;52164;52165;52166;52167;52168;52169;52170;52171;52172;52173;52174;52175;52176;52177;52178;52179;52180;52181;52182;52183;52184;52185;52186;52187;52188;52189;52190;52191;52192;52193;52194;52195 52066 175 HLQLAIRNDEELNKLLGK Unmodified 2103.18 0.18003664 592 Q6FI13;P0C0S8;Q99878;Q9BTM1;Q16777;Q96KK5;P20671;Q9BTM1-2 HIST2H2AA3;HIST1H2AG;HIST1H2AJ;H2AFJ;HIST2H2AC;HIST1H2AH;HIST1H2AD Histone H2A type 2-A;Histone H2A type 1;Histone H2A type 1-J;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-H;Histone H2A type 1-D yes no 0 0 0 2 By MS/MS By MS/MS 4.81 2.94 4 1 2 1 3 5 9 7 59.929 59.985 3;4;5 6.8888E-58 18018 20211116_3436_TMUAki_TMT10x_P_F8 248.01 225.2 93063000 217950000 983120 86928000 420280000 720310000 303730000 1374100000 709210000 679290000 488750000 86646000 202880000 11206000 107410000 400010000 709430000 326740000 1343300000 695930000 692060000 478300000 22 22 7 22 22 22 22 22 22 22 22 56807000 135950000 877450 50541000 205690000 630170000 257250000 899280000 469890000 453230000 317620000 52893000 126540000 6332000 66260000 198520000 612270000 264830000 887390000 463330000 461030000 311110000 13 13 5 13 13 13 13 13 13 13 13 36255000 81997000 105670 36387000 214590000 90135000 46485000 474840000 239320000 226060000 171130000 33752000 76341000 4874400 41146000 201490000 97153000 61911000 455930000 232610000 231030000 167190000 9 9 2 9 9 9 9 9 9 9 9 83661000000 44871000000 38790000000 8109 592 7560 43286;43287;43288;43289;43290;43291;43292;43293;43294;43295;43296;43297;43298;43299;43300;43301 52196;52197;52198;52199;52200;52201;52202;52203;52204;52205;52206;52207;52208;52209;52210;52211;52212;52213;52214;52215;52216;52217 52203 22 HLQLAIRNDEELNKLLGR Unmodified 2131.1862 0.18618465 2391 Q93077;Q7L7L0;P04908 HIST1H2AC;HIST3H2A;HIST1H2AB Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E yes no 0 0 0 2 By MS/MS By matching 6.4 2.73 1 1 3 4 1 56.308 56.518 3;5 2.0046E-50 16784 20211116_3428_TMUAki_TMT10x_P_F1 230.29 194.77 3138700 5063900 16347 5675600 7261900 12291000 5738200 15294000 9923500 8049600 6738100 2922500 4727400 327830 5845700 6925400 12181000 6029800 15181000 9799300 8160100 6598600 2 2 1 2 2 2 2 2 2 2 2 3138700 5063900 16347 5675600 7261900 12291000 5738200 15294000 9923500 8049600 6738100 2922500 4727400 327830 5845700 6925400 12181000 6029800 15181000 9799300 8160100 6598600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5963200000 3398100000 2565100000 8110 2391 7561 43302;43303;43304;43305;43306 52218;52219;52220 52218 3 HLQLAVR Unmodified 835.50282 0.50282075 2134 Q8IUE6 HIST2H2AB Histone H2A type 2-B yes yes 0 0 0 0 By MS/MS By MS/MS 2.9 2.17 4 1 2 1 1 1 5 5 32.201 32.125 2;3 0.00053364 8338 20211116_3429_TMUAki_TMT10x_P_F2 137.59 44.893 4213300 7028700 82322 6462900 5813300 6600800 4780500 5499500 5365200 5053200 5731300 3923600 6556500 448440 6635300 5553100 6691200 4921200 5633800 5445600 4953600 5517400 9 9 9 9 9 9 9 9 9 9 9 1934000 3145000 40228 2874400 3320400 4374700 2378200 2482700 2501000 2421200 2561200 1801100 2933600 217250 2973900 3162500 4321600 2465400 2617900 2541100 2367200 2468800 5 5 5 5 5 5 5 5 5 5 5 2279200 3883700 42093 3588500 2492900 2226100 2402300 3016900 2864200 2631900 3170100 2122500 3622800 231190 3661300 2390600 2369600 2455800 3015900 2904400 2586300 3048600 4 4 4 4 4 4 4 4 4 4 4 1746600000 905310000 841310000 8111 2134 7562 43307;43308;43309;43310;43311;43312;43313;43314;43315;43316 52221;52222;52223;52224;52225;52226;52227;52228;52229 52223 9 HLQLAVRNDEELNK Unmodified 1677.8798 0.87983187 2134 Q8IUE6 HIST2H2AB Histone H2A type 2-B yes yes 0 0 0 1 By MS/MS By MS/MS 4.55 1.16 1 1 2 5 2 5 6 38.264 38.275 3;4 2.89E-23 9550 20211116_3431_TMUAki_TMT10x_P_F4 182.37 130.65 9833400 14879000 134140 16135000 17071000 15741000 10260000 15704000 13923000 10673000 14035000 9156400 13888000 984460 16365000 16202000 16060000 10876000 15818000 14008000 10631000 13536000 10 10 6 10 10 10 10 10 10 10 10 6503700 9858800 97288 10674000 11271000 13145000 7514500 11182000 9729200 7385400 9421200 6056000 9202400 663390 10869000 10716000 13195000 7887300 11355000 9790000 7369400 9097800 4 4 3 4 4 4 4 4 4 4 4 3329700 5020300 36856 5460700 5800300 2596700 2745000 4521200 4193700 3287900 4613900 3100300 4686100 321070 5496900 5485400 2865200 2989000 4462800 4217900 3262000 4437900 6 6 3 6 6 6 6 6 6 6 6 2231900000 1548600000 683270000 8112 2134 7563 43317;43318;43319;43320;43321;43322;43323;43324;43325;43326;43327 52230;52231;52232;52233;52234;52235;52236;52237;52238;52239;52240;52241 52230 12 HLQLSFQEPHFYLR Unmodified 1813.9264 0.92638813 1459 P85037 FOXK1 Forkhead box protein K1 yes yes 0 0 0 0 By MS/MS 1 0 1 1 57.187 57.187 4 2.3117E-06 16928 20211116_3428_TMUAki_TMT10x_P_F1 110.44 97.301 504210 785900 17059 841390 669400 852600 589440 480570 428690 476770 581250 469590 733540 60015 854610 640880 859520 597100 507270 448570 465790 555980 1 1 1 1 1 1 1 1 1 1 1 504210 785900 17059 841390 669400 852600 589440 480570 428690 476770 581250 469590 733540 60015 854610 640880 859520 597100 507270 448570 465790 555980 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 531230000 531230000 0 8113 1459 7564 43328 52242 52242 1 HLQTHSNTIVVSLQSK Unmodified 1790.9639 0.96389585 1608 Q13190;Q13190-3;Q13190-2;Q13190-4 STX5 Syntaxin-5 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 38.307 38.25 4 7.045E-11 11280 20211116_3439_TMUAki_TMT10x_S_F1 134.25 115.04 1521100 2564200 31005 2812700 3251000 3716900 2107200 2262200 2279000 1984000 2368100 1416500 2393600 179230 2865400 3090400 3698100 2202500 2365100 2314100 1949200 2281700 3 3 3 3 3 3 3 3 3 3 3 1212700 2034200 20765 2205500 2911100 3390400 1801400 1814700 1799900 1572900 1846200 1129300 1898800 143680 2255600 2764700 3345400 1885200 1917300 1832800 1546100 1779500 2 2 2 2 2 2 2 2 2 2 2 308370 529930 10240 607210 339910 326530 305820 447500 479140 411170 521940 287200 494770 35552 609800 325680 352680 317360 447800 481380 403070 502170 1 1 1 1 1 1 1 1 1 1 1 94325000 60259000 34066000 8114 1608 7565 43329;43330 52243;52244;52245 52245 3 HLREYQDLLNVK Unmodified 1526.8205 0.82052608 561;1842 P08670;P17661;P07197;P07197-2;Q16352 VIM;DES;NEFM;INA Vimentin;Desmin;Neurofilament medium polypeptide;Alpha-internexin no no 0 0 0 1 By matching By MS/MS 6.5 0.5 1 1 1 1 47.724 48.011 4 2.6423E-07 14950 20211116_3446_TMUAki_TMT10x_S_F7 130.1 111.37 1237500 2103200 21692 2366400 1604600 1080500 961340 2119500 2042000 1699100 1919800 1152400 1963500 127950 2376300 1523700 1203400 1042200 2089900 2025800 1676700 1855700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1237500 2103200 21692 2366400 1604600 1080500 961340 2119500 2042000 1699100 1919800 1152400 1963500 127950 2376300 1523700 1203400 1042200 2089900 2025800 1676700 1855700 1 1 1 1 1 1 1 1 1 1 1 295410000 106890000 188520000 8115 561;1842 7566 43331;43332 52246 52246 1 HLSVNDLPVGR Unmodified 1205.6517 0.65166983 862 P30048;P30048-2 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.29 2.81 2 2 1 2 4 3 40.36 40.516 3 1.2449E-14 10270 20211116_3436_TMUAki_TMT10x_P_F8 181.44 161.78 6809900 11140000 196660 11843000 10888000 10052000 7593100 7580700 7916600 6762900 8536500 6341900 10398000 778970 12006000 10368000 10295000 7884300 7807800 8061600 6638700 8215700 11 11 8 11 11 11 11 11 11 11 11 4099000 6729200 142020 6991400 8197200 7881400 4979700 4421100 4690700 3961000 4916800 3817600 6280000 519990 7127200 7786900 7896400 5210400 4655900 4792600 3887500 4736100 5 5 4 5 5 5 5 5 5 5 5 2710900 4411100 54648 4852100 2691300 2170800 2613400 3159600 3225900 2801900 3619700 2524400 4117700 258980 4878700 2580800 2399100 2673900 3151800 3269000 2751200 3479600 6 6 4 6 6 6 6 6 6 6 6 860940000 507250000 353690000 8116 862 7567 43333;43334;43335;43336;43337;43338;43339 52247;52248;52249;52250;52251;52252;52253;52254;52255;52256;52257;52258 52251 12 HLTDAYFK Unmodified 993.49198 0.4919813 1499 Q02878 RPL6 60S ribosomal protein L6 yes yes 0 0 0 0 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 41.921 42.017 3 0.0031795 12482 20211116_3446_TMUAki_TMT10x_S_F7 82.279 56.893 1940200 3146300 4268.9 4019900 3859800 4023400 1866000 2379200 2789800 1952100 2828500 1806500 2939100 189420 4039300 3651000 4061600 2025600 2489200 2799100 1924100 2727400 2 2 1 2 2 2 2 2 2 2 2 1171700 1795800 0 2298600 3148300 3434800 1283000 1432700 1560100 1081100 1606700 1091000 1677600 122530 2326400 2971700 3384100 1407500 1547200 1576600 1070300 1548500 1 1 0 1 1 1 1 1 1 1 1 768450 1350500 4268.9 1721300 711530 588570 582950 946490 1229800 871020 1221800 715530 1261500 66891 1712800 679280 677500 618050 942010 1222500 853790 1178900 1 1 1 1 1 1 1 1 1 1 1 287730000 216900000 70832000 8117 1499 7568 43340;43341;43342;43343;43344 52259;52260;52261;52262 52262 4 HLTGEFEK Unmodified 959.47125 0.47124585 1368 P62826 RAN GTP-binding nuclear protein Ran yes yes 0 0 0 0 By MS/MS By MS/MS 4.6 1.02 1 1 2 1 2 3 35.099 35.117 3 0.00044054 7451 20211116_3444_TMUAki_TMT10x_S_F5 126.62 100.02 7815500 12771000 12469 11970000 11473000 12301000 8930800 7606500 8269200 7745900 10000000 7276500 11913000 637760 12273000 10933000 12405000 9171300 7974800 8502900 7559300 9593300 5 5 1 5 5 5 5 5 5 5 5 4187700 6511800 0 6364500 7279200 8477500 4522500 3638400 4022500 3789300 4998100 3898800 6075700 345920 6534800 6907400 8397300 4716000 3948000 4148700 3694600 4791300 2 2 0 2 2 2 2 2 2 2 2 3627800 6258800 12469 5606000 4193600 3823000 4408300 3968100 4246700 3956600 5002100 3377700 5837600 291840 5738500 4025300 4007800 4455300 4026800 4354200 3864700 4801900 3 3 1 3 3 3 3 3 3 3 3 345440000 261990000 83452000 8118 1368 7569 43345;43346;43347;43348;43349 52263;52264;52265;52266;52267 52267 5 HLTGEFEKK Unmodified 1087.5662 0.56620887 1368 P62826 RAN GTP-binding nuclear protein Ran yes yes 0 0 0 1 By MS/MS By MS/MS 4.75 0.433 1 3 3 1 31.234 31.233 3;4 0.0002173 8179 20211116_3433_TMUAki_TMT10x_P_F5 119.62 97.531 3077600 5065300 10184 4275800 5246500 7317600 3852500 3573400 3400500 3799700 4084900 2865600 4723500 293130 4463300 4996100 7182900 3966700 3829000 3503500 3701700 3919400 3 3 2 3 3 3 3 3 3 3 3 2933000 4823300 2813 4071900 5086100 7143100 3646900 3421300 3241200 3655700 3905400 2730900 4497900 274050 4253000 4840700 7003800 3761900 3673400 3338600 3560700 3746800 2 2 1 2 2 2 2 2 2 2 2 144610 241970 7371.1 203940 160380 174520 205620 152140 159320 144050 179510 134700 225640 19080 210300 155360 179100 204770 155570 164820 141020 172540 1 1 1 1 1 1 1 1 1 1 1 350620000 274960000 75669000 8119 1368 7570 43350;43351;43352;43353 52268;52269;52270 52269 3 HLVDEPQNLIK Unmodified 1304.7089 0.70885036 38 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS 4.27 1.21 1 2 3 3 2 7 4 45.632 45.676 2;3 1.9694E-30 12617 20211116_3431_TMUAki_TMT10x_P_F4 274.52 210.85 + 29055000 42434000 415150 47558000 67879000 50339000 40311000 101240000 108450000 67538000 63077000 27055000 39615000 3205000 48197000 64409000 52254000 44440000 99359000 105730000 67350000 62253000 11 11 6 11 11 11 11 11 11 11 11 14813000 19452000 72005 22075000 53202000 41532000 30756000 45134000 47728000 30347000 27906000 13791000 18161000 1698400 22626000 50444000 41191000 32896000 45265000 47109000 30248000 27534000 7 7 3 7 7 7 7 7 7 7 7 14242000 22982000 343140 25483000 14677000 8806500 9555300 56110000 60719000 37191000 35171000 13263000 21454000 1506600 25571000 13965000 11063000 11544000 54095000 58626000 37102000 34719000 4 4 3 4 4 4 4 4 4 4 4 15516000000 9487400000 6028500000 8120 38 7571 43354;43355;43356;43357;43358;43359;43360;43361;43362;43363;43364 52271;52272;52273;52274;52275;52276;52277;52278;52279;52280;52281 52274 11 HLVDETMDPFVDR Oxidation (M) 1588.7192 0.71915705 1929 Q5SRE5;Q5SRE5-2 NUP188 Nucleoporin NUP188 homolog yes no 0 0 1 0 By MS/MS By MS/MS 2 0 2 1 1 45.375 45.214 3 0.001777 13700 20211116_3429_TMUAki_TMT10x_P_F2 65.805 55.884 1797600 2933000 28585 3435200 2990900 2804800 1995900 2222500 2168200 1725900 2547600 1674000 2738700 192390 3459600 2844500 2883100 2081900 2274200 2211700 1706000 2445800 2 2 2 2 2 2 2 2 2 2 2 1023400 1669100 22269 2002200 2342700 2236500 1389600 1276800 1321200 932710 1434000 953080 1558700 124080 2022500 2223700 2242300 1457200 1336300 1351100 925110 1379900 1 1 1 1 1 1 1 1 1 1 1 774180 1263800 6315.9 1433000 648180 568320 606330 945680 846990 793160 1113600 720880 1179900 68306 1437000 620830 640780 624660 937890 860590 780920 1066000 1 1 1 1 1 1 1 1 1 1 1 185290000 149110000 36187000 8121 1929 7572 43365;43366 52282;52283 52282 2520 2 HLVGGERDPMNLFAFGDVDGVGINAK Oxidation (M) 2743.3388 0.33879848 2221 Q8NBF2;Q8NBF2-2 NHLRC2 NHL repeat-containing protein 2 yes no 0 0 1 1 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 65.433 65.634 4 0.029605 19866 20211116_3434_TMUAki_TMT10x_P_F6 40.756 27.568 4871300 8432600 89341 8712600 6048300 6832200 6179700 5487600 5322000 5591200 6228500 4536200 7869600 488680 8840400 5807100 7046000 6234900 5650400 5483900 5456400 5980300 2 2 1 2 2 2 2 2 2 2 2 2148200 3401000 0 3802000 2397900 3887900 2862800 2392900 2288300 2346100 2441800 2000000 3175000 166670 3851600 2309900 3921800 2861700 2507000 2358500 2293200 2350800 1 1 0 1 1 1 1 1 1 1 1 2723100 5031600 89341 4910700 3650400 2944300 3316900 3094700 3033600 3245100 3786700 2536100 4694500 322010 4988800 3497200 3124200 3373200 3143400 3125300 3163100 3629500 1 1 1 1 1 1 1 1 1 1 1 1736900000 997880000 739050000 8122 2221 7573 43367;43368 52284 52284 2632 1 HLVGVCYTEDEAK Unmodified 1519.6977 0.69769333 558 P08574 CYC1 Cytochrome c1, heme protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 38.881 38.986 3 6.7467E-06 10505 20211116_3433_TMUAki_TMT10x_P_F5 95.401 75.294 2209600 3634300 14299 4318200 4730200 4201800 2658400 2138500 1918400 2098600 2765900 2057400 3393800 229300 4355200 4484200 4241400 2781900 2277200 2014100 2051200 2641900 2 2 1 2 2 2 2 2 2 2 2 1888100 3085400 14299 3819300 4372800 3893500 2320000 1907600 1653500 1840500 2367900 1758100 2881700 204660 3845600 4142100 3917200 2440000 2037700 1736600 1800300 2262100 1 1 1 1 1 1 1 1 1 1 1 321470 548970 0 498890 357460 308330 338410 230880 264960 258070 398040 299300 512060 24638 509640 342110 324120 341990 239470 277490 250920 379850 1 1 0 1 1 1 1 1 1 1 1 222180000 212910000 9264800 8123 558 7574 43369;43370;43371 52285;52286;52287 52286 3 HLVGVDSLIGPETQIGEK Unmodified 1891.0051 0.005091963 2923 Q9NR50;Q9NR50-3;Q9NR50-2 EIF2B3 Translation initiation factor eIF-2B subunit gamma yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 61.768 61.796 3 1.8943E-08 18281 20211116_3434_TMUAki_TMT10x_P_F6 113.47 94.641 11510000 18648000 210910 19399000 16033000 26966000 16671000 16098000 15697000 13686000 15722000 10719000 17403000 1214200 19850000 15402000 26760000 16846000 16843000 16013000 13466000 15166000 3 3 3 3 3 3 3 3 3 3 3 11510000 18648000 210910 19399000 16033000 26966000 16671000 16098000 15697000 13686000 15722000 10719000 17403000 1214200 19850000 15402000 26760000 16846000 16843000 16013000 13466000 15166000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 474090000 474090000 0 8124 2923 7575 43372;43373 52288;52289;52290;52291 52289 4 HLVMGDIPAAVNAFQEAASLLGK Oxidation (M) 2367.2257 0.2256662 1091 P49321;P49321-3;P49321-2 NASP Nuclear autoantigenic sperm protein yes no 0 0 1 0 By MS/MS By MS/MS 3.46 2.41 2 4 4 1 2 7 6 80.139 80.114 3;4 1.3433E-21 27755 20211116_3429_TMUAki_TMT10x_P_F2 158.15 142.56 75278000 120040000 283630 110200000 71885000 126510000 86702000 84784000 86183000 91477000 91077000 70088000 111970000 5604900 113360000 69279000 126940000 87155000 88509000 87873000 89066000 87708000 19 19 8 19 19 19 19 19 19 19 19 51413000 81965000 233970 74961000 44977000 94726000 53490000 57019000 57267000 61239000 61159000 47870000 76456000 3735100 77263000 43330000 94434000 53929000 60002000 58232000 59636000 58877000 13 13 6 13 13 13 13 13 13 13 13 23864000 38076000 49656 35239000 26908000 31787000 33213000 27765000 28916000 30238000 29918000 22219000 35518000 1869800 36098000 25949000 32505000 33226000 28507000 29641000 29430000 28830000 6 6 2 6 6 6 6 6 6 6 6 27172000000 13357000000 13815000000 8125 1091 7576 43374;43375;43376;43377;43378;43379;43380;43381;43382;43383;43384;43385;43386 52292;52293;52294;52295;52296;52297;52298;52299;52300;52301;52302;52303;52304;52305;52306;52307;52308;52309;52310 52294 1418 19 HLVMGDIPAAVNAFQEAASLLGK Unmodified 2351.2308 0.23075158 1091 P49321;P49321-3;P49321-2 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 0 By MS/MS By MS/MS 3 0.866 3 2 3 3 5 81.769 81.754 3;4 5.2817E-28 27751 20211116_3442_TMUAki_TMT10x_S_F4 169.43 150.17 21140000 31631000 133070 32942000 20353000 22221000 23547000 10902000 10870000 13461000 20866000 19683000 29520000 1776100 33354000 19598000 23044000 23326000 11732000 11968000 13041000 19819000 12 12 7 12 12 12 12 12 12 12 12 10587000 15905000 80587 16272000 9880000 13968000 10850000 6228900 6083500 7372100 10827000 9857700 14842000 894600 16539000 9499500 14198000 10807000 6757900 6565800 7152800 10298000 6 6 4 6 6 6 6 6 6 6 6 10553000 15726000 52479 16671000 10473000 8253000 12698000 4672800 4786400 6088800 10039000 9825600 14678000 881470 16814000 10099000 8846400 12519000 4974100 5401900 5888300 9521600 6 6 3 6 6 6 6 6 6 6 6 2606000000 888620000 1717300000 8126 1091 7576 43387;43388;43389;43390;43391;43392;43393;43394 52311;52312;52313;52314;52315;52316;52317;52318;52319;52320;52321;52322 52320 12 HLVMGDIPAAVNAFQEAASLLGKK Oxidation (M) 2495.3206 0.32062922 1091 P49321;P49321-3;P49321-2 NASP Nuclear autoantigenic sperm protein yes no 0 0 1 1 By MS/MS By MS/MS 3.73 0.862 1 3 5 2 5 6 78.648 78.619 3;4;5 6.3092E-38 27670 20211116_3430_TMUAki_TMT10x_P_F3 189.11 176.63 59856000 100290000 842020 75433000 82288000 109010000 78731000 100900000 94017000 94856000 89639000 55738000 93484000 4881400 79211000 78861000 108800000 80519000 102820000 94822000 92891000 86607000 12 12 8 12 12 12 12 12 12 12 12 25457000 42116000 582500 33177000 23873000 59633000 30252000 42701000 41148000 41840000 36753000 23707000 39265000 2605100 34873000 23084000 58738000 30690000 44244000 41228000 40898000 35591000 5 5 3 5 5 5 5 5 5 5 5 34400000 58170000 259520 42255000 58415000 49379000 48479000 58199000 52869000 53017000 52886000 32031000 54219000 2276200 44338000 55777000 50063000 49830000 58572000 53594000 51992000 51017000 7 7 5 7 7 7 7 7 7 7 7 19208000000 9779100000 9429200000 8127 1091 7577 43395;43396;43397;43398;43399;43400;43401;43402;43403;43404;43405 52323;52324;52325;52326;52327;52328;52329;52330;52331;52332;52333;52334 52323 1418 12 HLVMGDIPAAVNAFQEAASLLGKK Unmodified 2479.3257 0.3257146 1091 P49321;P49321-3;P49321-2 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 1 By MS/MS 5.5 0.5 1 1 2 79.963 79.964 4 2.0812E-22 25783 20211116_3444_TMUAki_TMT10x_S_F5 146.39 137.57 13428000 21499000 211800 20110000 18252000 11728000 16871000 7284800 5830000 8947700 14341000 12504000 20055000 1378200 20488000 17479000 12365000 16843000 7680700 6716200 8670300 13571000 4 4 4 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13428000 21499000 211800 20110000 18252000 11728000 16871000 7284800 5830000 8947700 14341000 12504000 20055000 1378200 20488000 17479000 12365000 16843000 7680700 6716200 8670300 13571000 4 4 4 4 4 4 4 4 4 4 4 1533700000 0 1533700000 8128 1091 7577 43406;43407 52335;52336;52337;52338 52336 4 HLVSPEALDLLDK Unmodified 1448.7875 0.78749461 736 P19784 CSNK2A2 Casein kinase II subunit alpha' yes yes 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 64.18 64.237 3 0.00013045 19380 20211116_3444_TMUAki_TMT10x_S_F5 87.498 66.835 4486500 7528400 36139 7449000 4745400 5504600 4635700 6700600 7240900 7167200 6657100 4177700 7024500 409270 7575800 4549500 5754500 4788500 6766300 7231700 6980600 6439900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4486500 7528400 36139 7449000 4745400 5504600 4635700 6700600 7240900 7167200 6657100 4177700 7024500 409270 7575800 4549500 5754500 4788500 6766300 7231700 6980600 6439900 1 1 1 1 1 1 1 1 1 1 1 443560000 0 443560000 8129 736 7578 43408;43409 52339;52340 52339 2 HLVVPGDTITTDTGFMR Oxidation (M) 1874.9196 0.91964777 1667 Q13868;Q13868-3;Q13868-2 EXOSC2 Exosome complex component RRP4 yes no 0 0 1 0 By matching By MS/MS 5.67 0.471 1 2 1 2 50.463 50.605 3 0.0088104 14042 20211116_3445_TMUAki_TMT10x_S_F6 50.827 44.098 5336300 8742700 23693 9489100 5151300 4682300 3963100 7720900 7808000 6856800 7903400 4968800 8160700 461900 9555900 4910900 5134800 4201100 7670900 7778400 6732300 7621100 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5336300 8742700 23693 9489100 5151300 4682300 3963100 7720900 7808000 6856800 7903400 4968800 8160700 461900 9555900 4910900 5134800 4201100 7670900 7778400 6732300 7621100 3 3 3 3 3 3 3 3 3 3 3 750620000 206060000 544550000 8130 1667 7579 43410;43411;43412 52341;52342;52343 52343 2236 3 HLVYESDQNK Unmodified 1231.5833 0.5833155 252 O43852;O43852-3;O43852-4;O43852-2;O43852-15;O43852-5;O43852-9 CALU Calumenin yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 32.3 32.055 3 1.201E-09 7263 20211116_3431_TMUAki_TMT10x_P_F4 156.83 132.13 515070 874500 0 885270 485100 478570 550100 518350 543560 454660 689010 479550 816040 38782 896280 466540 513520 554390 523110 558430 446670 660160 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 515070 874500 0 885270 485100 478570 550100 518350 543560 454660 689010 479550 816040 38782 896280 466540 513520 554390 523110 558430 446670 660160 2 2 0 2 2 2 2 2 2 2 2 16393000 0 16393000 8131 252 7580 43413;43414;43415 52344;52345;52346;52347 52345 4 HLWDYTFGPEK Unmodified 1391.651 0.65100113 1297 P61160;P61160-2 ACTR2 Actin-related protein 2 yes no 0 0 0 0 By MS/MS 6 0 1 1 59.909 59.959 3 0.023754 17530 20211116_3434_TMUAki_TMT10x_P_F6 58.172 43.2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8132 1297 7581 43416 52348 52348 1 HLYLAEEER Unmodified 1158.5669 0.56693715 3046 Q9P031 CCDC59 Thyroid transcription factor 1-associated protein 26 yes yes 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 33.564 33.451 3 0.0018831 10401 20211116_3441_TMUAki_TMT10x_S_F3 78.516 39.74 685350 1097500 10959 1182900 1226900 1308100 860490 913990 1012700 791260 1013900 638200 1024400 72395 1202600 1167700 1316000 896710 945500 1023700 777840 978040 2 2 1 2 2 2 2 2 2 2 2 430860 674680 0 756490 962000 1011400 595080 574640 630180 499830 636130 401160 629850 40936 769780 913040 1004900 623890 604060 639780 491240 613470 1 1 0 1 1 1 1 1 1 1 1 254490 422830 10959 426390 264920 296610 265410 339350 382540 291420 377770 237040 394560 31459 432800 254690 311130 272820 341430 383880 286590 364570 1 1 1 1 1 1 1 1 1 1 1 67730000 52203000 15527000 8133 3046 7582 43417;43418;43419;43420 52349;52350 52350 2 HLYTLDGGDIINALCFSPNR Unmodified 2275.1056 0.10555106 1405 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 5.54 2.65 2 2 1 1 2 5 6 7 76.938 76.913 2;3 1.2985E-80 25112 20211116_3436_TMUAki_TMT10x_P_F8 304.19 293.81 96859000 163130000 913340 156830000 94111000 140690000 110640000 80124000 68289000 86362000 106830000 90190000 152190000 7032200 160190000 90695000 142960000 110050000 84708000 72693000 84089000 101860000 20 20 13 20 20 20 20 20 20 20 20 55041000 90918000 452650 86888000 48229000 96282000 58769000 45960000 40383000 51096000 58270000 51251000 84821000 3910300 89065000 46524000 96375000 58492000 49422000 42522000 49691000 55657000 11 11 7 11 11 11 11 11 11 11 11 41817000 72210000 460690 69938000 45882000 44406000 51871000 34164000 27906000 35266000 48562000 38939000 67371000 3122000 71127000 44171000 46583000 51560000 35286000 30171000 34397000 46207000 9 9 6 9 9 9 9 9 9 9 9 42558000000 23435000000 19122000000 8134 1405 7583 43421;43422;43423;43424;43425;43426;43427;43428;43429;43430;43431;43432;43433 52351;52352;52353;52354;52355;52356;52357;52358;52359;52360;52361;52362;52363;52364;52365;52366;52367;52368;52369;52370;52371 52359 21 HMCDGDIVIFNR Oxidation (M) 1491.6599 0.65986803 796 P24928;P24928-2 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 0 0 1 0 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 39.204 39.321 3 1.4766E-07 11254 20211116_3430_TMUAki_TMT10x_P_F3 130.56 124.26 1281500 2017100 49348 2240100 1485900 1484000 1356400 1672900 1696900 1531800 1826200 1193600 1883000 155100 2258200 1424500 1562700 1393200 1687100 1716000 1501900 1757700 4 4 4 4 4 4 4 4 4 4 4 292550 486230 12391 514430 594020 659460 393840 393990 421770 381600 414750 272480 453810 40024 524980 565290 656900 410820 413610 427610 373210 400310 2 2 2 2 2 2 2 2 2 2 2 988970 1530800 36957 1725600 891870 824580 962580 1278900 1275200 1150200 1411400 921110 1429200 115080 1733200 859190 905810 982370 1273500 1288400 1128700 1357300 2 2 2 2 2 2 2 2 2 2 2 92602000 16283000 76318000 8135 796 7584 43434;43435;43436;43437 52372;52373;52374;52375;52376 52373 941 5 HMDGGQIDGQEITATAVLAPWPRPPPR Oxidation (M) 2925.4556 0.45555957 1785 Q15287;Q15287-3;Q15287-2 RNPS1 RNA-binding protein with serine-rich domain 1 yes no 0 0 1 1 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 58.281 58.72 4 6.8755E-34 19310 20211116_3446_TMUAki_TMT10x_S_F7 178.35 172.19 27001000 45788000 715720 53891000 51501000 54384000 41195000 26901000 26169000 27831000 35514000 25145000 42755000 3097700 54413000 49156000 54755000 41860000 28766000 27612000 27143000 33970000 8 8 6 8 8 8 8 8 8 8 8 23288000 39282000 643060 46128000 46825000 50322000 37368000 22187000 21720000 22837000 29902000 21687000 36679000 2708600 46637000 44689000 50374000 37914000 23998000 23072000 22277000 28592000 6 6 4 6 6 6 6 6 6 6 6 3713400 6506300 72665 7763200 4676200 4062200 3827100 4713400 4448900 4994600 5612400 3458100 6075800 389070 7775600 4466900 4381200 3945600 4767800 4540000 4866400 5378000 2 2 2 2 2 2 2 2 2 2 2 3237800000 2076400000 1161400000 8136 1785 7585 43438;43439;43440 52377;52378;52379;52380;52381;52382;52383;52384 52384 2399 8 HMDGGQIDGQEITATAVLAPWPRPPPR Unmodified 2909.4606 0.46064495 1785 Q15287;Q15287-3;Q15287-2 RNPS1 RNA-binding protein with serine-rich domain 1 yes no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 61.711 62.051 4 2.7579E-12 18996 20211116_3436_TMUAki_TMT10x_P_F8 107.17 100.71 5739600 10416000 121490 9499600 6154400 9198900 7025500 6212600 5859900 5801100 7365900 5345100 9715600 594890 9751300 5930300 9322600 7044700 6455000 6065900 5682600 7059000 2 2 2 2 2 2 2 2 2 2 2 3678000 6689000 87429 6139300 3480100 6771200 4554900 3785600 3854900 3621000 4426300 3425300 6239500 383640 6311400 3369200 6792000 4542300 3994700 3972600 3543200 4252200 1 1 1 1 1 1 1 1 1 1 1 2061600 3726700 34059 3360200 2674300 2427600 2470700 2427000 2005000 2180100 2939600 1919800 3476100 211240 3439900 2561200 2530600 2502300 2460300 2093300 2139300 2806800 1 1 1 1 1 1 1 1 1 1 1 2251900000 1337500000 914410000 8137 1785 7585 43441;43442 52385;52386 52385 2 HMDPPPAPVQDR Oxidation (M) 1374.635 0.63503349 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 1 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 25.543 25.283 3 2.7968E-05 5235 20211116_3429_TMUAki_TMT10x_P_F2 100.09 91.866 66068 135670 0 119700 87147 132930 99733 114730 103140 101780 97235 61516 126540 0 123440 83877 134190 100610 117180 104560 99938 93981 2 2 0 2 2 2 2 2 2 2 2 37947 79054 0 71278 53145 98405 57951 63561 58624 56451 58304 35332 73736 0 73670 51079 97792 58552 66170 59599 55426 56253 1 1 0 1 1 1 1 1 1 1 1 28121 56620 0 48420 34002 34525 41782 51170 44511 45330 38931 26183 52801 0 49767 32798 36403 42059 51011 44965 44512 37728 1 1 0 1 1 1 1 1 1 1 1 15469000 4675300 10794000 8138 1057 7586 43443;43444 52387;52388 52387 1372 2 HMDPPPAPVQDR Unmodified 1358.6401 0.64011887 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 30.744 30.778 3 0.029124 6661 20211116_3431_TMUAki_TMT10x_P_F4 45.507 25.895 237840 400450 3018.2 371490 451070 446580 273650 225070 281190 225170 366450 221470 373550 25518 382140 428230 445330 287080 240020 288760 219910 350860 1 1 1 1 1 1 1 1 1 1 1 237840 400450 3018.2 371490 451070 446580 273650 225070 281190 225170 366450 221470 373550 25518 382140 428230 445330 287080 240020 288760 219910 350860 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17745000 17745000 0 8139 1057 7586 43445 52389 52389 1 HMEPGNNPIFPR Oxidation (M) 1423.6667 0.66666797 99 O00512 BCL9 B-cell CLL/lymphoma 9 protein yes yes 0 0 1 0 By MS/MS 6 0 1 1 33.406 33.379 3 0.001691 6784 20211116_3434_TMUAki_TMT10x_P_F6 70.728 55.391 157370 256800 126.52 283220 254960 279830 160400 133480 133220 121800 174090 146500 239720 11438 287010 241900 281990 166800 142750 138160 119430 166680 3 3 1 3 3 3 3 3 3 3 3 157370 256800 126.52 283220 254960 279830 160400 133480 133220 121800 174090 146500 239720 11438 287010 241900 281990 166800 142750 138160 119430 166680 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4080500 4080500 0 8140 99 7587 43446 52390;52391;52392 52391 75 3 HMGGILAVANIR Oxidation (M) 1266.6867 0.68667513 1070 P48147 PREP Prolyl endopeptidase yes yes 0 0 1 0 By MS/MS 1 0 1 1 40.517 40.378 3 4.2502E-06 12130 20211116_3439_TMUAki_TMT10x_S_F1 108.47 94.034 460850 692530 16856 790290 377940 345480 391310 532140 487420 456850 606980 429220 646570 52755 792670 363740 383590 399190 529370 495900 449280 581830 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 460850 692530 16856 790290 377940 345480 391310 532140 487420 456850 606980 429220 646570 52755 792670 363740 383590 399190 529370 495900 449280 581830 1 1 1 1 1 1 1 1 1 1 1 39711000 0 39711000 8141 1070 7588 43447 52393 52393 1391 1 HMGLMLATCSADGIVR 2 Oxidation (M) 1762.8164 0.81644503 2441 Q96EE3-1;Q96EE3 SEH1L Nucleoporin SEH1 yes no 0 0 2 0 By MS/MS By MS/MS 6 0 2 1 1 38.98 39.143 3 7.9555E-10 9562 20211116_3434_TMUAki_TMT10x_P_F6 109.07 90.709 362970 627320 2512.3 778080 358080 305810 309870 516610 502680 434920 587680 337960 585920 30190 776060 342150 345400 322810 512170 505970 428130 564280 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 362970 627320 2512.3 778080 358080 305810 309870 516610 502680 434920 587680 337960 585920 30190 776060 342150 345400 322810 512170 505970 428130 564280 3 3 2 3 3 3 3 3 3 3 3 31233000 0 31233000 8142 2441 7589 43448;43449 52394;52395;52396;52397 52394 2754;2755 4 HMLPSGFRK Oxidation (M) 1087.5597 0.5596837 1382 P62910 RPL32 60S ribosomal protein L32 yes yes 0 0 1 1 By MS/MS By MS/MS 2.67 1.49 2 1 1 1 1 3 3 31.164 31.121 4 0.039064 6452 20211116_3428_TMUAki_TMT10x_P_F1 47.603 30.971 3545700 5618300 82126 5152000 5151000 5047900 4053200 3205500 3062800 2959900 4299300 3302000 5240700 386090 5287300 4916100 5107500 4138100 3344700 3203000 2900900 4109100 6 6 4 6 6 6 6 6 6 6 6 2177100 3368400 36268 3096800 3670000 3787900 2591900 1861500 1759600 1744600 2556200 2027300 3142100 231490 3188800 3493800 3772900 2659700 1986300 1854800 1708700 2441200 3 3 2 3 3 3 3 3 3 3 3 1368600 2249800 45858 2055200 1481000 1260000 1461300 1344000 1303200 1215200 1743000 1274700 2098600 154600 2098500 1422300 1334500 1478400 1358400 1348300 1192200 1667800 3 3 2 3 3 3 3 3 3 3 3 336510000 200330000 136180000 8143 1382 7590 43450;43451;43452;43453;43454;43455 52398;52399;52400;52401 52398 1855 4 HMLPTVLR Oxidation (M) 981.54297 0.54297101 869 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 1 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 33.011 33.049 3 0.02693 7341 20211116_3440_TMUAki_TMT10x_S_F2 53.968 34.697 127250 215150 9695.7 224980 132170 152340 184430 153770 140920 142800 166320 118540 200800 17937 227730 128520 159710 182990 155940 146170 139920 159650 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 127250 215150 9695.7 224980 132170 152340 184430 153770 140920 142800 166320 118540 200800 17937 227730 128520 159710 182990 155940 146170 139920 159650 2 2 1 2 2 2 2 2 2 2 2 22769000 0 22769000 8144 869 7591 43456;43457;43458 52402;52403;52404 52403 1039 3 HMLPTVLR Unmodified 965.54806 0.54805639 869 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 0 0 By MS/MS 2 0 1 1 37.905 37.999 3 0.0042643 9342 20211116_3440_TMUAki_TMT10x_S_F2 77.923 58.445 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8145 869 7591 43459 52405 52405 1 HMNLILCDCDEFR Oxidation (M) 1737.7273 0.72729567 674 P14678;P63162;P14678-2;P14678-3;P63162-2 SNRPB;SNRPN Small nuclear ribonucleoprotein-associated proteins B and B';Small nuclear ribonucleoprotein-associated protein N yes no 0 0 1 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 44.776 44.889 3 0.0001242 12700 20211116_3442_TMUAki_TMT10x_S_F4 88.087 76.981 1636600 2891200 0 3059400 2608400 2815700 1958200 2157600 2189500 1997800 2517400 1523700 2698400 124360 3105600 2483100 2868700 2027400 2222200 2229000 1957800 2418200 2 2 0 2 2 2 2 2 2 2 2 750670 1197900 0 1290400 1637200 1903500 1109400 921920 920070 782100 990930 698850 1118100 63035 1319000 1555800 1879300 1147100 982700 946810 769600 953720 1 1 0 1 1 1 1 1 1 1 1 885980 1693300 0 1769100 971200 912230 848770 1235700 1269500 1215700 1526400 824830 1580300 61320 1786600 927280 989440 880370 1239500 1282200 1188200 1464500 1 1 0 1 1 1 1 1 1 1 1 401210000 218990000 182220000 8146 674 7592 43460;43461;43462 52406;52407 52407 750 2 HMNLILCDCDEFRK Oxidation (M) 1865.8223 0.82225869 674 P14678;P63162;P14678-2;P14678-3;P63162-2 SNRPB;SNRPN Small nuclear ribonucleoprotein-associated proteins B and B';Small nuclear ribonucleoprotein-associated protein N yes no 0 0 1 1 By MS/MS By MS/MS 5.4 0.917 2 3 4 1 5 5 42.636 42.818 3;4 6.1254E-10 11804 20211116_3433_TMUAki_TMT10x_P_F5 116.9 103.77 20929000 33100000 317930 32348000 30016000 38184000 26452000 30750000 29864000 28323000 29921000 19488000 30883000 2033600 33141000 28702000 38373000 27124000 31567000 30234000 27761000 28862000 8 8 6 8 8 8 8 8 8 8 8 11495000 17421000 236280 17578000 20764000 27185000 17132000 16817000 15829000 14683000 15990000 10705000 16256000 1303100 18065000 19832000 26869000 17527000 17557000 16166000 14428000 15420000 4 4 4 4 4 4 4 4 4 4 4 9433300 15679000 81657 14770000 9252300 10999000 9320200 13933000 14035000 13639000 13931000 8782900 14627000 730540 15076000 8870000 11504000 9596300 14009000 14068000 13333000 13442000 4 4 2 4 4 4 4 4 4 4 4 5183000000 2552300000 2630700000 8147 674 7593 43463;43464;43465;43466;43467;43468;43469;43470;43471;43472 52408;52409;52410;52411;52412;52413;52414;52415;52416;52417 52410 750 10 HMNLILCDCDEFRK Unmodified 1849.8273 0.82734407 674 P14678;P63162;P14678-2;P14678-3;P63162-2 SNRPB;SNRPN Small nuclear ribonucleoprotein-associated proteins B and B';Small nuclear ribonucleoprotein-associated protein N yes no 0 0 0 1 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 49.965 50.258 4 1.2021E-09 15378 20211116_3435_TMUAki_TMT10x_P_F7 134.68 126.09 44889000 74747000 499900 85920000 59722000 50352000 49747000 33920000 28790000 32119000 53519000 41799000 69789000 4376000 86332000 57043000 53120000 50333000 35263000 31083000 31443000 50862000 10 10 7 10 10 10 10 10 10 10 10 19543000 31754000 171610 36733000 35287000 34664000 28217000 16691000 14010000 14857000 23482000 18197000 29649000 1993700 37091000 33667000 35037000 28551000 17822000 15210000 14586000 22359000 5 5 4 5 5 5 5 5 5 5 5 25346000 42993000 328290 49187000 24436000 15688000 21530000 17229000 14780000 17262000 30037000 23602000 40140000 2382200 49241000 23376000 18083000 21782000 17441000 15873000 16857000 28503000 5 5 3 5 5 5 5 5 5 5 5 6472700000 3397800000 3074800000 8148 674 7593 43473;43474;43475;43476;43477;43478 52418;52419;52420;52421;52422;52423;52424;52425;52426;52427 52422 10 HNALIQEVISQSR Unmodified 1493.795 0.79503961 1656 Q13617;Q13617-2 CUL2 Cullin-2 yes no 0 0 0 0 By MS/MS 7 0 1 1 46.771 47.262 3 0.00081534 14723 20211116_3446_TMUAki_TMT10x_S_F7 76.01 50.624 2381700 4769400 90898 3621500 2956800 3235700 2414600 5209300 4687800 4597800 4789000 2218300 4446100 290230 3769900 2827000 3364500 2547900 5178500 4673100 4515600 4616600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2381700 4769400 90898 3621500 2956800 3235700 2414600 5209300 4687800 4597800 4789000 2218300 4446100 290230 3769900 2827000 3364500 2547900 5178500 4673100 4515600 4616600 1 1 1 1 1 1 1 1 1 1 1 524550000 0 524550000 8149 1656 7594 43479 52428 52428 1 HNDDEQYAWESSAGGSFTVR Unmodified 2254.9516 0.95155284 553;544 P07900;P07900-2;Q14568;P08238 HSP90AA1;HSP90AA2P;HSP90AB1 Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Heat shock protein HSP 90-beta no no 0 0 0 0 By MS/MS By MS/MS 3.24 1.25 2 6 10 7 2 2 15 14 48.581 48.516 2;3;4 9.1123E-104 13672 20211116_3440_TMUAki_TMT10x_S_F2 347.65 338.51 69302000 129720000 609690 142360000 102820000 119680000 93825000 59821000 58248000 60355000 90503000 64529000 121090000 4910800 144000000 98383000 121970000 94540000 63859000 61959000 58924000 86306000 55 55 28 55 55 55 55 55 55 55 55 42985000 77713000 323000 85640000 72885000 98107000 66330000 37675000 36964000 37896000 54631000 40024000 72544000 3050800 86993000 69726000 97818000 66715000 41362000 39517000 37002000 52154000 33 33 19 33 33 33 33 33 33 33 33 26317000 52003000 286690 56720000 29938000 21568000 27496000 22146000 21284000 22459000 35871000 24505000 48542000 1860000 57005000 28657000 24153000 27825000 22497000 22442000 21922000 34152000 22 22 9 22 22 22 22 22 22 22 22 47478000000 29793000000 17685000000 8150 544;553 7595 43480;43481;43482;43483;43484;43485;43486;43487;43488;43489;43490;43491;43492;43493;43494;43495;43496;43497;43498;43499;43500;43501;43502;43503;43504;43505;43506;43507;43508 52429;52430;52431;52432;52433;52434;52435;52436;52437;52438;52439;52440;52441;52442;52443;52444;52445;52446;52447;52448;52449;52450;52451;52452;52453;52454;52455;52456;52457;52458;52459;52460;52461;52462;52463;52464;52465;52466;52467;52468;52469;52470;52471;52472;52473;52474;52475;52476;52477;52478;52479;52480;52481;52482;52483;52484;52485;52486;52487;52488 52470 60 HNEETGDNVGPLIIK Unmodified 1634.8264 0.82639932 3028 Q9NZ45 CISD1 CDGSH iron-sulfur domain-containing protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 45.428 45.267 3 1.8871E-14 15241 20211116_3441_TMUAki_TMT10x_S_F3 150.12 127.92 1581700 2524700 23414 3338200 2882400 2526800 1719500 2510300 2746100 1917100 2400700 1472800 2358900 169240 3335900 2735800 2623800 1836700 2535400 2736500 1896800 2326600 2 2 1 2 2 2 2 2 2 2 2 775760 1154100 23414 1573500 2261000 1949700 1157400 1114300 1271800 884110 1033000 722480 1078400 106940 1581200 2141700 1944200 1235300 1168200 1280300 872950 1003900 1 1 1 1 1 1 1 1 1 1 1 805910 1370700 0 1764700 621350 577160 562050 1396000 1474300 1033000 1367700 750360 1280400 62306 1754700 594160 679620 601450 1367200 1456100 1023900 1322700 1 1 0 1 1 1 1 1 1 1 1 396510000 271760000 124740000 8151 3028 7596 43509;43510;43511 52489;52490;52491 52490 3 HNELTGDNVGPLILK Unmodified 1618.8679 0.8678702 2199 Q8N5K1 CISD2 CDGSH iron-sulfur domain-containing protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 54.443 54.603 3 5.327E-10 16494 20211116_3433_TMUAki_TMT10x_P_F5 134.24 120.34 19810000 33038000 135840 34425000 26955000 28538000 20333000 24364000 22001000 21486000 26308000 18445000 30833000 1804100 34933000 25683000 29342000 21023000 24896000 22462000 21103000 25245000 4 4 2 4 4 4 4 4 4 4 4 10615000 16670000 135840 18352000 17650000 20861000 12529000 12098000 11229000 10983000 14052000 9884500 15561000 1105200 18641000 16803000 20900000 12936000 12709000 11581000 10772000 13468000 2 2 2 2 2 2 2 2 2 2 2 9195100 16368000 0 16073000 9305000 7676900 7804300 12266000 10772000 10504000 12257000 8561000 15272000 698900 16292000 8880200 8441700 8086600 12187000 10881000 10331000 11778000 2 2 0 2 2 2 2 2 2 2 2 1315600000 496630000 819000000 8152 2199 7597 43512;43513;43514 52492;52493;52494;52495 52493 4 HNESVVK Unmodified 811.41882 0.41881635 95 O00487 PSMD14 26S proteasome non-ATPase regulatory subunit 14 yes yes 0 0 0 0 By MS/MS 3 0 1 1 26.445 26.152 3 0.046843 7605 20211116_3441_TMUAki_TMT10x_S_F3 48.561 33.18 46079 83590 1262.9 67931 61895 53061 53811 52919 55780 49943 72153 42914 77939 5218.8 70185 59221 54969 55066 53723 57241 48900 69096 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 46079 83590 1262.9 67931 61895 53061 53811 52919 55780 49943 72153 42914 77939 5218.8 70185 59221 54969 55066 53723 57241 48900 69096 1 1 1 1 1 1 1 1 1 1 1 1069000 0 1069000 8153 95 7598 43515 52496 52496 1 HNFTPLAR Unmodified 954.50355 0.50354903 1019 P42765 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes yes 0 0 0 0 By MS/MS 1 0 1 1 30.908 30.957 3 0.050358 8332 20211116_3439_TMUAki_TMT10x_S_F1 51.864 34.9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8154 1019 7599 43516 52497 52497 1 HNGICIYFSR Unmodified 1265.5975 0.59752577 354 O75694;O75694-2 NUP155 Nuclear pore complex protein Nup155 yes no 0 0 0 0 By MS/MS 1.5 0.5 1 1 2 41.595 41.533 3 0.0033511 12642 20211116_3439_TMUAki_TMT10x_S_F1 69.276 55.456 1071800 1829000 10367 2109800 969100 881020 863550 1434000 1419000 1093700 1567700 998010 1707700 95679 2114200 927100 985750 898650 1419900 1424600 1082200 1507700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1071800 1829000 10367 2109800 969100 881020 863550 1434000 1419000 1093700 1567700 998010 1707700 95679 2114200 927100 985750 898650 1419900 1424600 1082200 1507700 2 2 1 2 2 2 2 2 2 2 2 98239000 0 98239000 8155 354 7600 43517;43518 52498;52499 52498 2 HNIQFSSFDIFSDEEVR Unmodified 2068.949 0.94903365 376 O76003 GLRX3 Glutaredoxin-3 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 1.5 1 2 2 2 2 1 5 5 68.58 68.435 3 2.9248E-29 24736 20211116_3441_TMUAki_TMT10x_S_F3 180.64 155.27 39938000 66361000 402080 67183000 46077000 55872000 45353000 38794000 37021000 40631000 46575000 37188000 61925000 3626100 68311000 44178000 57233000 45783000 40360000 38367000 39607000 44633000 15 15 9 15 15 15 15 15 15 15 15 19123000 30366000 38095 30922000 20562000 33197000 21830000 18394000 17042000 18278000 21285000 17805000 28337000 1503400 31541000 19741000 33346000 21929000 19445000 17697000 17856000 20401000 7 7 2 7 7 7 7 7 7 7 7 20815000 35995000 363980 36261000 25515000 22676000 23523000 20400000 19979000 22353000 25290000 19383000 33588000 2122700 36770000 24437000 23887000 23855000 20914000 20669000 21750000 24232000 8 8 7 8 8 8 8 8 8 8 8 5282100000 2383500000 2898600000 8156 376 7601 43519;43520;43521;43522;43523;43524;43525;43526;43527;43528 52500;52501;52502;52503;52504;52505;52506;52507;52508;52509;52510;52511;52512;52513;52514;52515 52510 16 HNIQFSSFDIFSDEEVRQGLK Unmodified 2495.2081 0.20810188 376 O76003 GLRX3 Glutaredoxin-3 yes yes 0 0 0 1 By MS/MS By matching 7 0 2 1 1 66.702 67.174 4 1.8312E-55 22325 20211116_3435_TMUAki_TMT10x_P_F7 231.86 213.32 6704600 11169000 0 9193300 6987600 14976000 9272300 12671000 10479000 9600000 9525100 6241900 10415000 464560 9604700 6751300 14848000 9323200 12907000 10574000 9502300 9218000 2 2 0 2 2 2 2 2 2 2 2 6704600 11169000 0 9193300 6987600 14976000 9272300 12671000 10479000 9600000 9525100 6241900 10415000 464560 9604700 6751300 14848000 9323200 12907000 10574000 9502300 9218000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2229100000 1228200000 1000900000 8157 376 7602 43529;43530 52516;52517 52516 2 HNKPEVEVR Unmodified 1106.5833 0.58325592 1269 P59998;P59998-3;P59998-2 ARPC4 Actin-related protein 2/3 complex subunit 4 yes no 0 0 0 1 By MS/MS 5 0 2 2 27.189 27.115 3;4 0.014028 5596 20211116_3433_TMUAki_TMT10x_P_F5 64.82 38.436 172420 255500 3371.8 214730 186940 246310 174880 130740 150630 168190 238490 160570 238260 17641 222410 179150 246370 177270 139880 157420 162720 227340 1 1 1 1 1 1 1 1 1 1 1 172420 255500 3371.8 214730 186940 246310 174880 130740 150630 168190 238490 160570 238260 17641 222410 179150 246370 177270 139880 157420 162720 227340 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4966700 4966700 0 8158 1269 7603 43531;43532 52518;52519 52519 2 HNLITEMVALNPDFKPPADYKPPATR Unmodified 2934.5062 0.50619816 1819;1820 Q15637;Q15637-6;Q15637-4;Q15637-2;Q15637-3;Q15637-7;Q15637-5 SF1 Splicing factor 1 no no 0 0 0 2 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 66.413 66.223 5 1.6061E-17 20894 20211116_3440_TMUAki_TMT10x_S_F2 133.95 123.69 36305000 59574000 457380 60142000 38640000 41754000 41909000 26455000 23874000 28146000 39764000 33806000 55591000 3354300 61039000 37152000 43326000 41781000 27720000 25641000 27419000 37867000 9 9 7 9 9 9 9 9 9 9 9 15440000 24953000 247480 24404000 16846000 23172000 19249000 9995800 8365400 10499000 15726000 14378000 23282000 1530400 24917000 16228000 23386000 19062000 10843000 9247800 10233000 14942000 3 3 3 3 3 3 3 3 3 3 3 20865000 34621000 209900 35737000 21794000 18582000 22660000 16459000 15509000 17647000 24038000 19428000 32309000 1823900 36122000 20924000 19941000 22718000 16877000 16393000 17186000 22924000 6 6 4 6 6 6 6 6 6 6 6 4099800000 2355600000 1744200000 8159 1819;1820 7604 43533;43534;43535;43536 52520;52521;52522;52523;52524;52525;52526;52527;52528 52527 9 HNLITEMVALNPDFKPPADYKPPATR Oxidation (M) 2950.5011 0.50111278 1819;1820 Q15637;Q15637-6;Q15637-4;Q15637-2;Q15637-3;Q15637-7;Q15637-5 SF1 Splicing factor 1 no no 0 0 1 2 By MS/MS By MS/MS 5 3.29 2 1 2 3 2 55.272 55.372 5 2.206E-23 15750 20211116_3447_TMUAki_TMT10x_S_F8 149.07 142.84 43701000 76770000 700730 69743000 50122000 72478000 51221000 61350000 57242000 60097000 60565000 40694000 71608000 4209500 71686000 48119000 73417000 52085000 62901000 58088000 58745000 58322000 11 11 9 11 11 11 11 11 11 11 11 19052000 33228000 210760 31169000 24792000 44064000 24218000 26117000 24652000 26392000 26063000 17740000 30998000 1743000 32136000 23763000 43691000 24609000 27468000 25110000 25764000 25099000 4 4 3 4 4 4 4 4 4 4 4 24648000 43541000 489970 38574000 25330000 28414000 27003000 35233000 32590000 33705000 34501000 22953000 40610000 2466500 39551000 24356000 29726000 27476000 35433000 32978000 32981000 33223000 7 7 6 7 7 7 7 7 7 7 7 7174200000 4542600000 2631600000 8160 1819;1820 7604 43537;43538;43539;43540;43541 52529;52530;52531;52532;52533;52534;52535;52536;52537;52538;52539 52538 2437 11 HNNLDLVIIR Unmodified 1205.6881 0.68805534 250 O43837;O43837-2 IDH3B Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial yes no 0 0 0 0 By MS/MS 6 0 1 1 45.52 45.685 3 3.3143E-05 12043 20211116_3445_TMUAki_TMT10x_S_F6 125.3 112.72 1288300 2255100 8717.6 2097100 1286000 1131400 1329800 1585000 1360000 1375800 1882100 1199600 2103700 114900 2136100 1234700 1222400 1347500 1582400 1400800 1352300 1799500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1288300 2255100 8717.6 2097100 1286000 1131400 1329800 1585000 1360000 1375800 1882100 1199600 2103700 114900 2136100 1234700 1222400 1347500 1582400 1400800 1352300 1799500 1 1 1 1 1 1 1 1 1 1 1 120960000 0 120960000 8161 250 7605 43542 52540 52540 1 HNQLPLVIEFTEQTAPK Unmodified 1964.0367 0.036726442 533 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 By MS/MS By MS/MS 6 0.667 2 5 2 4 5 65.705 65.867 2;3;4 1.0197E-29 20511 20211116_3445_TMUAki_TMT10x_S_F6 165.58 132.53 81005000 135630000 1037900 125510000 94702000 131540000 97538000 87930000 75530000 85216000 102580000 75426000 126520000 7277700 128840000 90900000 132650000 98107000 91521000 78762000 83339000 98122000 15 15 9 15 15 15 15 15 15 15 15 47885000 79135000 825520 71273000 52258000 97343000 59034000 55983000 45864000 53155000 62474000 44588000 73812000 4338000 73655000 50297000 96629000 59119000 58922000 47824000 52031000 59752000 8 8 5 8 8 8 8 8 8 8 8 33119000 56496000 212420 54234000 42444000 34199000 38504000 31948000 29666000 32061000 40111000 30838000 52708000 2939800 55188000 40602000 36025000 38988000 32599000 30938000 31308000 38370000 7 7 4 7 7 7 7 7 7 7 7 9119300000 5479000000 3640400000 8162 533 7606 43543;43544;43545;43546;43547;43548;43549;43550;43551 52541;52542;52543;52544;52545;52546;52547;52548;52549;52550;52551;52552;52553;52554;52555;52556;52557 52556 17 HNVEVLGILSDDVETDTVAPGENLK Unmodified 2663.329 0.32900488 681 P15170-3;P15170-2;P15170 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 0 0 0 0 By MS/MS By MS/MS 2.18 1.11 4 3 2 2 7 4 73.005 72.892 3;4 1.3509E-22 24845 20211116_3429_TMUAki_TMT10x_P_F2 141.36 125.94 47217000 86670000 340710 74053000 49662000 79975000 55762000 46326000 49270000 47077000 56947000 43963000 80825000 3877800 76526000 47767000 80352000 56042000 48822000 50680000 45947000 54697000 18 18 9 18 18 18 18 18 18 18 18 27835000 49504000 138410 43128000 26562000 56470000 33147000 25651000 27385000 26987000 33601000 25917000 46169000 2246800 44648000 25632000 56013000 33100000 27676000 28332000 26302000 32221000 12 12 6 12 12 12 12 12 12 12 12 19382000 37166000 202310 30925000 23100000 23505000 22615000 20675000 21885000 20090000 23346000 18046000 34657000 1631000 31878000 22135000 24339000 22942000 21146000 22348000 19645000 22476000 6 6 3 6 6 6 6 6 6 6 6 10673000000 7152500000 3520300000 8163 681 7607 43552;43553;43554;43555;43556;43557;43558;43559;43560;43561;43562 52558;52559;52560;52561;52562;52563;52564;52565;52566;52567;52568;52569;52570;52571;52572;52573;52574;52575 52563 18 HNVQTLDIISR Unmodified 1294.6993 0.69934831 1524 Q06203 PPAT Amidophosphoribosyltransferase yes yes 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 4 1 37.016 37.045 2;3 5.7538E-15 7925 20211116_3434_TMUAki_TMT10x_P_F6 196.88 182.21 3530900 5607500 16660 5752500 6899100 6690700 4332800 4132300 4063700 3700800 4865900 3287500 5232900 325910 5872300 6549800 6700700 4520800 4317600 4174400 3632200 4669100 7 7 4 7 7 7 7 7 7 7 7 3145600 4984600 9744.2 5032800 6519500 6350300 3945000 3598300 3476500 3276900 4242000 2928700 4651300 287600 5150600 6185200 6326100 4121700 3787800 3584400 3213600 4068400 6 6 3 6 6 6 6 6 6 6 6 385350 622870 6916.1 719700 379580 340460 387740 533930 587250 423880 623880 358850 581560 38313 721710 364580 374580 399050 529810 590000 418510 600700 1 1 1 1 1 1 1 1 1 1 1 485690000 359860000 125830000 8164 1524 7608 43563;43564;43565;43566;43567 52576;52577;52578;52579;52580;52581;52582 52581 7 HPAKPDPSGECNPDLR Unmodified 1788.8213 0.82133071 1854 Q16576;Q16576-2 RBBP7 Histone-binding protein RBBP7 yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 30.303 30.289 4 1.5913E-07 6808 20211116_3433_TMUAki_TMT10x_P_F5 114.52 90.312 482090 806900 5539.6 879820 1311200 884480 590320 419390 518290 424100 608840 448910 753190 56108 892480 1239400 890320 634250 450020 533640 414010 584530 2 2 1 2 2 2 2 2 2 2 2 482090 806900 5539.6 879820 1311200 884480 590320 419390 518290 424100 608840 448910 753190 56108 892480 1239400 890320 634250 450020 533640 414010 584530 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 132650000 132650000 0 8165 1854 7609 43568;43569 52583 52583 1 HPAPPPSNYEILVK Unmodified 1560.83 0.83002813 3241 Q9Y2L1;Q9Y2L1-2 DIS3 Exosome complex exonuclease RRP44 yes no 0 0 0 0 By MS/MS 6 0 1 1 46.126 46.29 3 9.5044E-10 12287 20211116_3445_TMUAki_TMT10x_S_F6 112.15 91.773 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8166 3241 7610 43570 52584 52584 1 HPASEAEIQPQTQVTLR Unmodified 1903.9752 0.97518882 1617 Q13308;Q13308-5;Q13308-3;Q13308-4;Q13308-2;Q13308-6 PTK7 Inactive tyrosine-protein kinase 7 yes no 0 0 0 0 By MS/MS 5 0 1 1 34.946 35.123 3 0.067435 7501 20211116_3444_TMUAki_TMT10x_S_F5 31.765 17.531 106200 173450 0 190290 113270 75029 90937 108700 132720 114730 165730 98878 161910 8098.6 191220 108000 84301 94703 109000 134370 111800 158850 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 106200 173450 0 190290 113270 75029 90937 108700 132720 114730 165730 98878 161910 8098.6 191220 108000 84301 94703 109000 134370 111800 158850 1 1 0 1 1 1 1 1 1 1 1 9566100 0 9566100 8167 1617 7611 43571 52585 52585 1 HPDADSLYVEK Unmodified 1272.5986 0.59863121 1219 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS 4 0 1 1 38.472 38.513 3 0.0021468 9793 20211116_3431_TMUAki_TMT10x_P_F4 71.555 55.302 6697100 10588000 58920 13418000 20071000 16062000 8973500 9995100 9966700 7475500 9832300 6236100 9890700 795130 13529000 18969000 16064000 9713200 10393000 10091000 7404800 9489100 3 3 2 3 3 3 3 3 3 3 3 6697100 10588000 58920 13418000 20071000 16062000 8973500 9995100 9966700 7475500 9832300 6236100 9890700 795130 13529000 18969000 16064000 9713200 10393000 10091000 7404800 9489100 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 213850000 213850000 0 8168 1219 7612 43572 52586;52587;52588 52588 3 HPDAFYLAR Unmodified 1088.5403 0.54032847 2453 Q96EZ8;Q96EZ8-2;Q96EZ8-4;Q96EZ8-3 MCRS1 Microspherule protein 1 yes no 0 0 0 0 By MS/MS 6 0 1 1 35.972 35.953 3 0.0032148 7758 20211116_3434_TMUAki_TMT10x_P_F6 72.325 47.982 168490 232610 412.09 266910 345830 342540 212790 179210 195660 170160 192530 156890 217180 16837 271000 328270 340630 222270 190180 199690 166560 185820 1 1 1 1 1 1 1 1 1 1 1 168490 232610 412.09 266910 345830 342540 212790 179210 195660 170160 192530 156890 217180 16837 271000 328270 340630 222270 190180 199690 166560 185820 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9961900 9961900 0 8169 2453 7613 43573 52589 52589 1 HPDASVNFSEFSK Unmodified 1463.6681 0.66810776 574 P09429 HMGB1 High mobility group protein B1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.88 1.45 2 1 3 2 4 4 47.503 47.677 2;3 4.3697E-22 13657 20211116_3433_TMUAki_TMT10x_P_F5 166.62 114.13 14814000 22987000 347760 26296000 18415000 20406000 13667000 21878000 22426000 19468000 21224000 13795000 21461000 1588200 26505000 17558000 21184000 14382000 22097000 22388000 19113000 20511000 5 5 4 5 5 5 5 5 5 5 5 5135600 7877800 24846 9141100 11870000 12789000 7206500 7243100 7857300 6774600 7421800 4781900 7355500 528750 9290700 11265000 12679000 7573900 7630200 7949500 6635800 7173000 3 3 2 3 3 3 3 3 3 3 3 9678000 15109000 322920 17155000 6544600 7617000 6460600 14634000 14568000 12694000 13802000 9013600 14106000 1059400 17214000 6292700 8505700 6808600 14467000 14439000 12477000 13338000 2 2 2 2 2 2 2 2 2 2 2 2566500000 611350000 1955200000 8170 574 7614 43574;43575;43576;43577;43578;43579;43580;43581 52590;52591;52592;52593;52594;52595 52592 6 HPDASVNFSEFSKK Unmodified 1591.7631 0.76307078 574 P09429 HMGB1 High mobility group protein B1 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0.756 2 3 2 3 4 43.996 44.227 3;4 2.2904E-09 13330 20211116_3446_TMUAki_TMT10x_S_F7 128.95 95.511 35318000 56255000 294220 64582000 91566000 95497000 50725000 73216000 68790000 61610000 60884000 32883000 52523000 3503800 65758000 86757000 94879000 54148000 75218000 68911000 60650000 58977000 10 10 8 10 10 10 10 10 10 10 10 28521000 45079000 243640 51839000 84383000 88430000 45015000 59839000 56320000 50242000 49089000 26554000 42089000 2887700 52954000 79904000 87187000 48069000 61995000 56545000 49464000 47578000 7 7 5 7 7 7 7 7 7 7 7 6797400 11175000 50580 12742000 7182800 7067100 5710200 13377000 12470000 11368000 11795000 6329400 10434000 616090 12804000 6853200 7691300 6078300 13222000 12366000 11185000 11399000 3 3 3 3 3 3 3 3 3 3 3 4465100000 3007300000 1457800000 8171 574 7615 43582;43583;43584;43585;43586;43587;43588 52596;52597;52598;52599;52600;52601;52602;52603;52604;52605 52604 10 HPDFPKKPLTPYFR Unmodified 1741.9304 0.93041088 705 P17480;P17480-2 UBTF Nucleolar transcription factor 1 yes no 0 0 0 2 By MS/MS By matching 4 0 2 1 1 45.907 46.07 5 0.0010393 12766 20211116_3431_TMUAki_TMT10x_P_F4 76.311 59.243 1092600 1856000 16350 1879400 2093800 3114700 1471800 1779500 1506600 1552300 1562000 1017400 1731900 119840 1934200 1993000 3066800 1526500 1869900 1533200 1525400 1505100 1 1 1 1 1 1 1 1 1 1 1 1092600 1856000 16350 1879400 2093800 3114700 1471800 1779500 1506600 1552300 1562000 1017400 1731900 119840 1934200 1993000 3066800 1526500 1869900 1533200 1525400 1505100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 395770000 168190000 227590000 8172 705 7616 43589;43590 52606 52606 1 HPDSHQLFIGNLPHEVDKSELK Unmodified 2539.2819 0.28193553 1616 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 6.92 0.954 1 3 4 4 6 6 48.84 49.068 5;6 7.4152E-20 14899 20211116_3435_TMUAki_TMT10x_P_F7 155.71 144.08 114060000 186370000 1401800 208910000 159740000 197020000 117280000 122910000 123260000 133400000 137480000 106210000 173990000 10895000 211350000 152150000 199780000 121370000 129020000 125640000 129860000 132180000 24 24 17 24 24 24 24 24 24 24 24 74485000 121470000 618020 135060000 124880000 163390000 88128000 79466000 80150000 90845000 88369000 69354000 113390000 7015300 137250000 118830000 162820000 91067000 85372000 82180000 88255000 84992000 14 14 8 14 14 14 14 14 14 14 14 39575000 64904000 783770 73849000 34857000 33627000 29151000 43444000 43113000 42559000 49113000 36854000 60596000 3880100 74105000 33323000 36958000 30300000 43649000 43462000 41601000 47192000 10 10 9 10 10 10 10 10 10 10 10 24079000000 13549000000 10530000000 8173 1616 7617 43591;43592;43593;43594;43595;43596;43597;43598;43599;43600;43601;43602 52607;52608;52609;52610;52611;52612;52613;52614;52615;52616;52617;52618;52619;52620;52621;52622;52623;52624;52625;52626;52627;52628;52629;52630 52616 24 HPDSSVNFAEFSK Unmodified 1463.6681 0.66810776 817 P26583 HMGB2 High mobility group protein B2 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 2 2 47.518 47.675 3 0.011274 12474 20211116_3444_TMUAki_TMT10x_S_F5 55.885 30.95 8551000 15109000 193810 17028000 11577000 12025000 8717900 14128000 13628000 12296000 13768000 7963300 14105000 931940 17161000 11040000 12606000 9144500 14204000 13654000 12084000 13277000 4 4 4 4 4 4 4 4 4 4 4 2334500 3842400 40589 4582300 5929700 6336000 3987300 3735100 3330900 3275700 3808400 2173900 3588100 281730 4648700 5639300 6288100 4125700 3915100 3434200 3218200 3659000 1 1 1 1 1 1 1 1 1 1 1 6216600 11266000 153220 12446000 5646900 5688700 4730700 10393000 10297000 9019900 9959600 5789400 10517000 650210 12512000 5400800 6317700 5018800 10289000 10220000 8865900 9618100 3 3 3 3 3 3 3 3 3 3 3 3538800000 1384800000 2153900000 8174 817 7618 43603;43604;43605;43606 52631;52632;52633;52634;52635 52633 5 HPDVEVDGFSELR Unmodified 1498.7052 0.70522155 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 1.03 2 3 4 3 6 6 46.819 46.752 2;3 3.2205E-12 14315 20211116_3429_TMUAki_TMT10x_P_F2 131.54 96.25 14573000 24001000 198290 26845000 23280000 23900000 16802000 17955000 19194000 16998000 20464000 13570000 22406000 1279700 27141000 22168000 24396000 17456000 18527000 19467000 16641000 19702000 11 11 8 11 11 11 11 11 11 11 11 8291900 13186000 157030 14705000 17094000 17931000 10842000 9454300 10527000 9440800 11343000 7721700 12310000 758140 14943000 16243000 17878000 11315000 10040000 10752000 9220900 10917000 6 6 4 6 6 6 6 6 6 6 6 6281000 10815000 41258 12139000 6185500 5969200 5959700 8501000 8666200 7557300 9121000 5848300 10096000 521560 12198000 5925400 6518500 6140800 8487200 8714100 7419700 8784600 5 5 4 5 5 5 5 5 5 5 5 5876700000 3822400000 2054300000 8175 586 7619 43607;43608;43609;43610;43611;43612;43613;43614;43615;43616;43617;43618 52636;52637;52638;52639;52640;52641;52642;52643;52644;52645;52646;52647 52639 12 HPDYAILAAR Unmodified 1125.5931 0.59309232 791 P23921 RRM1 Ribonucleoside-diphosphate reductase large subunit yes yes 0 0 0 0 By MS/MS By MS/MS 5.88 1.83 1 2 2 1 2 5 3 35.769 35.953 2;3 1.1101E-06 8226 20211116_3444_TMUAki_TMT10x_S_F5 148.5 121.2 3570900 5453800 59502 5686600 5381800 5601300 4022400 3411500 3321800 3425400 4602200 3325200 5089800 362130 5783500 5128800 5662300 4129400 3579500 3455500 3344800 4400000 9 9 7 9 9 9 9 9 9 9 9 2654200 3906800 37234 4022700 4456000 4853500 3080400 2560500 2537900 2642100 3436100 2471500 3645900 265250 4108000 4239400 4841700 3179700 2721500 2637500 2577000 3286800 6 6 4 6 6 6 6 6 6 6 6 916670 1546900 22268 1663900 925740 747790 941960 851020 783880 783320 1166200 853680 1443900 96879 1675500 889400 820620 949730 858020 817940 767820 1113100 3 3 3 3 3 3 3 3 3 3 3 382770000 227070000 155700000 8176 791 7620 43619;43620;43621;43622;43623;43624;43625;43626 52648;52649;52650;52651;52652;52653;52654;52655;52656 52655 9 HPELADK Unmodified 808.40792 0.40791731 1056 P46783;Q9NQ39 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like yes no 0 0 0 0 By MS/MS By MS/MS 3.17 1.34 1 1 1 2 1 5 1 29.558 29.478 2;3 0.002476 6126 20211116_3431_TMUAki_TMT10x_P_F4 102.41 39.748 3630500 5796100 38544 4857000 3729400 4485600 4093500 4394600 2325400 2294900 3861500 3380600 5404900 338030 5015700 3587400 4590500 4078400 4409800 2497600 2327800 3677500 6 6 5 6 6 6 6 6 6 6 6 2825800 4418700 33532 3739900 2935000 3830300 3080400 3931300 1855700 1809200 3000300 2631400 4120600 266790 3864600 2819900 3898700 3079000 3928400 1982000 1854400 2858800 5 5 4 5 5 5 5 5 5 5 5 804640 1377400 5011.9 1117100 794380 655390 1013100 463300 469720 485670 861220 749230 1284300 71237 1151100 767490 691830 999370 481420 515530 473410 818670 1 1 1 1 1 1 1 1 1 1 1 186520000 117290000 69233000 8177 1056 7621 43627;43628;43629;43630;43631;43632 52657;52658;52659;52660;52661;52662 52659 6 HPELADKNVPNLHVMK Unmodified 1840.9618 0.96178736 1056 P46783;Q9NQ39 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like yes no 0 0 0 1 By MS/MS By matching 7.67 0.471 1 2 2 1 42.126 42.366 5 0.016589 12298 20211116_3435_TMUAki_TMT10x_P_F7 50.787 39.019 3696300 5621600 368300 7545200 11361000 12184000 6536100 6676900 5706600 5857600 5875700 3444400 5252700 757040 7630800 10795000 12002000 6856500 7042000 5847800 5754600 5662900 2 2 2 2 2 2 2 2 2 2 2 3696300 5621600 368300 7545200 11361000 12184000 6536100 6676900 5706600 5857600 5875700 3444400 5252700 757040 7630800 10795000 12002000 6856500 7042000 5847800 5754600 5662900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 306290000 283020000 23270000 8178 1056 7622 43633;43634;43635 52663 52663 1 HPELFEALGIAQPK Unmodified 1548.83 0.83002813 1337 P62195;P62195-2 PSMC5 26S protease regulatory subunit 8 yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 62.9 63.256 3 0.014436 18933 20211116_3434_TMUAki_TMT10x_P_F6 50.897 33.461 4704000 7035900 115.05 7712100 4531500 7340400 4308500 3687800 3815700 3938300 4644400 4379900 6567700 387680 7814300 4339400 7418700 4366700 3941400 3932800 3836000 4454600 1 1 1 1 1 1 1 1 1 1 1 4704000 7035900 115.05 7712100 4531500 7340400 4308500 3687800 3815700 3938300 4644400 4379900 6567700 387680 7814300 4339400 7418700 4366700 3941400 3932800 3836000 4454600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 767050000 767050000 0 8179 1337 7623 43636;43637 52664 52664 1 HPELNISEEGITK Unmodified 1465.7413 0.7412727 705 P17480;P17480-2 UBTF Nucleolar transcription factor 1 yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 44.488 44.518 3 8.0091E-12 12511 20211116_3442_TMUAki_TMT10x_S_F4 148.48 113.75 9348700 13804000 284370 18607000 11377000 10552000 9038600 9663600 10153000 8694100 11778000 8706700 12898000 1068500 18522000 10867000 11226000 9325000 9841100 10337000 8531000 11312000 4 4 4 4 4 4 4 4 4 4 4 2659500 3300900 127900 4712700 5585600 5147000 3125400 2662100 2633900 2291700 3226100 2477200 3085400 380670 4714500 5301600 5160700 3283600 2821000 2722100 2253500 3093800 1 1 1 1 1 1 1 1 1 1 1 6689200 10503000 156480 13894000 5791200 5404900 5913200 7001500 7518600 6402400 8552200 6229500 9812900 687840 13808000 5565400 6065700 6041300 7020200 7615300 6277600 8218000 3 3 3 3 3 3 3 3 3 3 3 1458900000 664680000 794230000 8180 705 7624 43638;43639;43640;43641;43642;43643 52665;52666;52667;52668;52669;52670 52669 6 HPEQIFPR Unmodified 1022.5298 0.52976379 1444 P82933 MRPS9 28S ribosomal protein S9, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 28.402 28.416 3 0.0010294 7845 20211116_3433_TMUAki_TMT10x_P_F5 105.57 85.264 619340 1031900 12681 1024300 1081800 911740 717080 570810 620950 526480 770820 576760 962840 69642 1043800 1028800 928110 743460 596240 641240 516010 738950 2 2 2 2 2 2 2 2 2 2 2 478500 810640 1405.5 791670 926050 765160 529740 439450 491590 401420 605600 445540 756340 47249 808580 878060 773810 556880 462100 505820 393610 580670 1 1 1 1 1 1 1 1 1 1 1 140840 221250 11276 232640 155700 146590 187340 131360 129360 125060 165220 131220 206500 22393 235240 150770 154300 186570 134140 135410 122400 158280 1 1 1 1 1 1 1 1 1 1 1 65379000 44205000 21174000 8181 1444 7625 43644;43645 52671;52672 52671 2 HPESNTAGMDIFAK Oxidation (M) 1532.6929 0.6929423 3342 Q9Y696 CLIC4 Chloride intracellular channel protein 4 yes yes 0 0 1 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 37.959 38.053 3 6.048E-08 8694 20211116_3444_TMUAki_TMT10x_S_F5 121.24 109.96 2993300 4736500 0 5683700 10162000 9102000 4522900 5181800 6082700 4082600 5623100 2786500 4423200 278480 5782500 9597100 8973500 4930900 5433400 6103500 4032500 5438600 3 3 0 3 3 3 3 3 3 3 3 2419900 3819200 0 4553900 9736300 8627500 4142700 4321000 4977400 3417600 4615700 2252600 3566400 242800 4654800 9191000 8441100 4520400 4583600 5014300 3375100 4463800 2 2 0 2 2 2 2 2 2 2 2 573460 917330 0 1129700 425290 474430 380180 860840 1105300 664900 1007300 533870 856760 35687 1127700 406020 532430 410440 849870 1089200 657450 974770 1 1 0 1 1 1 1 1 1 1 1 375830000 288480000 87344000 8182 3342 7626 43646;43647 52673;52674;52675 52675 3292 3 HPFAQAVGR Unmodified 981.51445 0.51444807 250 O43837;O43837-2;O43837-3 IDH3B Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 1 0 4 2 2 29.122 29.163 2;3 0.0001311 7602 20211116_3439_TMUAki_TMT10x_S_F1 127.02 106.12 360590 586140 550.71 579830 480250 479530 431860 304510 351850 318600 468030 335720 546910 28274 590470 459060 490770 438110 318860 365570 310580 447890 4 4 1 4 4 4 4 4 4 4 4 171520 262750 0 258830 270850 296720 189170 143720 171000 148760 212350 159670 245160 11832 264890 257400 296510 195600 154000 176220 145080 203560 2 2 0 2 2 2 2 2 2 2 2 189070 323380 550.71 321010 209410 182810 242690 160780 180850 169840 255680 176050 301740 16442 325580 201660 194260 242510 164860 189350 165500 244330 2 2 1 2 2 2 2 2 2 2 2 20358000 8338500 12019000 8183 250 7627 43648;43649;43650;43651 52676;52677;52678 52677 3 HPFIVNHPK Unmodified 1087.5927 0.59269839 1242 P55265;P55265-5;P55265-4;P55265-3;P55265-2 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 30.699 30.723 4 0.0056015 8182 20211116_3439_TMUAki_TMT10x_S_F1 66.351 46.738 571230 846640 5111.6 839660 666350 689300 668470 470530 513270 497960 652450 531880 789970 50136 854840 639070 706570 673140 490270 533900 485200 625090 2 2 1 2 2 2 2 2 2 2 2 310810 425600 5111.6 443070 404150 429130 320380 262990 281720 252130 344400 289440 397200 31840 450560 385720 434300 328160 275450 290520 246690 330290 1 1 1 1 1 1 1 1 1 1 1 260410 421030 0 396600 262200 260170 348090 207540 231550 245830 308060 242440 392780 18297 404280 253360 272270 344980 214820 243380 238520 294800 1 1 0 1 1 1 1 1 1 1 1 70349000 27053000 43296000 8184 1242 7628 43652;43653 52679;52680 52680 2 HPFPGPGLAIR Unmodified 1160.6455 0.64546224 1128 P49915;P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 0 0 By MS/MS By MS/MS 3.5 2.65 1 4 1 2 4 4 41.869 41.742 2;3 5.1477E-06 13765 20211116_3441_TMUAki_TMT10x_S_F3 114.97 94.827 6796500 10327000 42312 11749000 12728000 14515000 8692400 9012100 9147800 8493700 9752500 6328100 9641500 632890 11927000 12102000 14493000 9042200 9425100 9307900 8316700 9389100 6 6 3 6 6 6 6 6 6 6 6 5548800 8397100 32344 9722700 11482000 13499000 7621200 7412300 7519800 7152600 8129700 5166500 7840300 534550 9881600 10912000 13382000 7929200 7835800 7676200 6996300 7823500 4 4 2 4 4 4 4 4 4 4 4 1247700 1929900 9968.5 2026100 1245900 1015900 1071200 1599700 1628000 1341100 1622800 1161700 1801200 98344 2045100 1189900 1110400 1112900 1589300 1631700 1320500 1565600 2 2 1 2 2 2 2 2 2 2 2 2405800000 1684000000 721810000 8185 1128 7629 43654;43655;43656;43657;43658;43659;43660;43661 52681;52682;52683;52684;52685;52686;52687;52688 52687 8 HPFSFPLENQAR Unmodified 1441.7102 0.71024735 2629 Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 45.864 46.256 3 2.0916E-06 13833 20211116_3435_TMUAki_TMT10x_P_F7 115.65 100.64 8810300 14530000 137420 15872000 13424000 15444000 9975600 12982000 12387000 11564000 12692000 8204100 13563000 899700 16091000 12791000 15705000 10374000 13281000 12507000 11353000 12234000 5 5 4 5 5 5 5 5 5 5 5 5047500 8084800 78213 9025900 9918000 12275000 6524800 7541000 7391800 6874700 7410300 4700100 7547500 536160 9190000 9427700 12199000 6822600 7886100 7482600 6741600 7147900 3 3 2 3 3 3 3 3 3 3 3 3762800 6444800 59212 6846300 3505700 3169000 3450900 5441000 4995500 4689700 5281600 3504000 6015200 363540 6901000 3363700 3506200 3551000 5394800 5024600 4611100 5086100 2 2 2 2 2 2 2 2 2 2 2 1044000000 788260000 255710000 8186 2629 7630 43662;43663;43664;43665 52689;52690;52691;52692;52693;52694 52689 6 HPGSFDVVHVK Unmodified 1220.6302 0.63020611 1362 P62701 RPS4X 40S ribosomal protein S4, X isoform no no 0 0 0 0 By MS/MS By MS/MS 3.75 1.64 1 1 2 2 2 35.799 35.832 4 1.1218E-05 7741 20211116_3444_TMUAki_TMT10x_S_F5 108.35 94.354 1534300 2567000 12365 2486700 2251700 2561500 1567200 1756000 1953000 1656100 2001400 1428700 2395000 148190 2543600 2142500 2586800 1637400 1823000 1971600 1621600 1929100 3 3 2 3 3 3 3 3 3 3 3 726750 1233400 3543.7 1149700 1468100 1779000 734480 810980 960660 808130 934420 676700 1150600 73938 1188200 1389500 1751800 790380 873320 966480 789380 902220 1 1 1 1 1 1 1 1 1 1 1 807580 1333500 8821.5 1337000 783550 782500 832750 945000 992290 848020 1066900 752000 1244400 74249 1355400 753040 835010 847060 949710 1005100 832220 1026900 2 2 1 2 2 2 2 2 2 2 2 267140000 164850000 102290000 8187 1362 7631 43666;43667;43668;43669 52695;52696;52697 52697 3 HPHDIIDDINSGAVECPAS Unmodified 2045.9113 0.91126793 864 P30050;P30050-2 RPL12 60S ribosomal protein L12 yes no 0 0 0 0 By MS/MS By MS/MS 2.81 1.29 3 4 4 3 2 8 8 49.976 49.889 2;3 2.2016E-18 15888 20211116_3430_TMUAki_TMT10x_P_F3 157.8 150.92 17268000 31170000 165020 34198000 22373000 28547000 18217000 26113000 26934000 24858000 25680000 16078000 29096000 1242800 34589000 21349000 29376000 18966000 26635000 26975000 24330000 24811000 23 23 10 23 23 23 23 23 23 23 23 7747900 12720000 117300 14874000 13156000 19809000 11621000 11240000 11005000 10376000 10845000 7214300 11877000 740800 15096000 12577000 19683000 11848000 11835000 11217000 10169000 10467000 10 10 6 10 10 10 10 10 10 10 10 9520000 18450000 47724 19324000 9217100 8739000 6596900 14872000 15929000 14483000 14835000 8864000 17219000 502030 19494000 8771300 9693400 7117400 14800000 15758000 14161000 14344000 13 13 4 13 13 13 13 13 13 13 13 32264000000 18408000000 13856000000 8188 864 7632 43670;43671;43672;43673;43674;43675;43676;43677;43678;43679;43680;43681;43682;43683;43684;43685 52698;52699;52700;52701;52702;52703;52704;52705;52706;52707;52708;52709;52710;52711;52712;52713;52714;52715;52716;52717;52718;52719;52720;52721 52702 24 HPQLEAVLMGTR Unmodified 1350.7078 0.70780451 2250 Q8NFF5;Q8NFF5-3;Q8NFF5-2 FLAD1 FAD synthase;Molybdenum cofactor biosynthesis protein-like region;FAD synthase region yes no 0 0 0 0 By MS/MS 7 0 1 1 45.91 46.416 3 0.0005077 14370 20211116_3446_TMUAki_TMT10x_S_F7 79.466 62.099 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8189 2250 7633 43686 52722 52722 1 HPQPFLR Unmodified 893.48717 0.48717069 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 29.892 29.958 3 0.015924 7908 20211116_3439_TMUAki_TMT10x_S_F1 73.039 30.039 142880 250980 1402.8 244540 180520 171250 180110 171780 158050 166160 213370 133050 234160 13680 248830 173170 178990 182030 174450 163710 162510 204120 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 142880 250980 1402.8 244540 180520 171250 180110 171780 158050 166160 213370 133050 234160 13680 248830 173170 178990 182030 174450 163710 162510 204120 1 1 1 1 1 1 1 1 1 1 1 16916000 0 16916000 8190 542 7634 43687;43688 52723;52724 52724 2 HPQPGAVELAAK Unmodified 1216.6564 0.65642086 831 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 33.109 33.287 3 6.4661E-08 8319 20211116_3433_TMUAki_TMT10x_P_F5 110.31 86.93 174670 295190 797.75 304270 194830 148660 168140 176240 182740 186820 258630 162640 275470 15507 307440 186190 161660 172400 178110 187960 182020 247140 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 174670 295190 797.75 304270 194830 148660 168140 176240 182740 186820 258630 162640 275470 15507 307440 186190 161660 172400 178110 187960 182020 247140 1 1 1 1 1 1 1 1 1 1 1 13001000 0 13001000 8191 831 7635 43689;43690 52725;52726 52725 2 HPTLLQDPDLR Unmodified 1303.6884 0.68844927 286 O60749;O60749-2 SNX2 Sorting nexin-2 yes no 0 0 0 0 By MS/MS 7 0 1 1 37.79 38.228 3 0.051895 10671 20211116_3435_TMUAki_TMT10x_P_F7 40.373 23.047 303750 480250 5652.1 513550 641220 578320 402440 298520 294940 264140 361590 282860 448250 35177 522520 609170 578880 417370 316610 307120 259390 346750 1 1 1 1 1 1 1 1 1 1 1 303750 480250 5652.1 513550 641220 578320 402440 298520 294940 264140 361590 282860 448250 35177 522520 609170 578880 417370 316610 307120 259390 346750 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8508800 8508800 0 8192 286 7636 43691 52727 52727 1 HPVSLEQYLMEGSYNK Oxidation (M) 1909.888 0.88801329 1076 P48556 PSMD8 26S proteasome non-ATPase regulatory subunit 8 yes yes 0 0 1 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 56.244 56.488 3 7.4512E-08 16128 20211116_3434_TMUAki_TMT10x_P_F6 115.91 102.51 16698000 29110000 224500 30086000 24081000 32007000 19041000 23207000 23844000 23766000 22877000 15548000 27167000 1589200 30653000 22970000 32290000 19726000 24056000 24013000 23188000 22098000 7 7 6 7 7 7 7 7 7 7 7 9688700 16682000 108050 16677000 16622000 24509000 12881000 13096000 13890000 13864000 13434000 9021100 15566000 893280 17130000 15843000 24228000 13293000 13914000 14070000 13509000 12973000 4 4 3 4 4 4 4 4 4 4 4 7008800 12428000 116450 13410000 7459500 7498200 6159800 10112000 9954000 9902000 9443000 6526800 11601000 695920 13523000 7126900 8062100 6433600 10143000 9942400 9679400 9125100 3 3 3 3 3 3 3 3 3 3 3 3675500000 1871600000 1803900000 8193 1076 7637 43692;43693;43694;43695;43696;43697 52728;52729;52730;52731;52732;52733;52734;52735 52730 1396 8 HPVSLEQYLMEGSYNK Unmodified 1893.8931 0.89309867 1076 P48556 PSMD8 26S proteasome non-ATPase regulatory subunit 8 yes yes 0 0 0 0 By MS/MS By matching 7 0 2 1 1 61.148 61.751 3 2.914E-05 20083 20211116_3435_TMUAki_TMT10x_P_F7 87.519 74.893 3816800 6078600 155110 6803100 4957600 7381100 5299800 4017900 3140300 3076900 4582800 3555000 5674700 476980 6897700 4771500 7408100 5291100 4226700 3340400 3043800 4376200 1 1 1 1 1 1 1 1 1 1 1 3816800 6078600 155110 6803100 4957600 7381100 5299800 4017900 3140300 3076900 4582800 3555000 5674700 476980 6897700 4771500 7408100 5291100 4226700 3340400 3043800 4376200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1423800000 1052800000 370950000 8194 1076 7637 43698;43699 52736 52736 1 HPYFYAPELLYYANK Unmodified 1887.9196 0.91957142 38 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.577 1 4 1 3 3 72.043 71.908 3;4 3.735E-10 24523 20211116_3429_TMUAki_TMT10x_P_F2 136.27 124.05 + 23833000 35846000 480970 34240000 30773000 38427000 33317000 40797000 41735000 42794000 31144000 22192000 33442000 2254800 35107000 29582000 38942000 33922000 41420000 41714000 41713000 30371000 8 8 6 8 8 8 8 8 8 8 8 14559000 22062000 277930 21930000 18616000 30219000 23537000 25004000 25451000 27605000 18520000 13556000 20586000 1284800 22505000 17975000 30157000 23677000 25763000 25562000 26854000 18080000 5 5 4 5 5 5 5 5 5 5 5 9274000 13784000 203030 12311000 12157000 8208000 9779600 15793000 16284000 15189000 12624000 8636300 12856000 969980 12601000 11607000 8785300 10246000 15656000 16152000 14859000 12292000 3 3 2 3 3 3 3 3 3 3 3 3621500000 2634400000 987090000 8195 38 7638 43700;43701;43702;43703;43704;43705 52737;52738;52739;52740;52741;52742;52743;52744;52745 52739 9 HQACLLLQK Unmodified 1109.6015 0.60154852 2629 Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 38.128 38.485 3 0.0047248 9354 20211116_3436_TMUAki_TMT10x_P_F8 65.305 37.976 771140 1300100 38824 1486800 1287400 1309200 958910 1169300 1148000 983930 1189500 718290 1213900 107350 1501000 1228500 1341500 995690 1190400 1161100 968590 1146200 2 2 2 2 2 2 2 2 2 2 2 350210 568810 17606 669440 825130 874490 507390 545130 542960 470470 538550 326210 531140 52095 678900 784250 870830 532380 568640 550650 462560 519660 1 1 1 1 1 1 1 1 1 1 1 420920 731320 21218 817400 462300 434660 451520 624200 605080 513450 650950 392080 682720 55252 822080 444290 470670 463310 621760 610470 506030 626530 1 1 1 1 1 1 1 1 1 1 1 37408000 23124000 14284000 8196 2629 7639 43706;43707 52746;52747 52746 2 HQAFEAELHANADR Unmodified 1607.7441 0.74406667 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.85 0.948 1 4 4 4 7 6 31.266 31.21 3;4 1.8835E-37 9503 20211116_3441_TMUAki_TMT10x_S_F3 242.19 223.45 2561800 4204100 37539 4157400 3459200 4147700 2983900 2489700 2521600 2325700 3362800 2385500 3922700 245610 4244400 3306700 4188800 3037200 2610100 2615400 2278100 3217900 16 16 7 16 16 16 16 16 16 16 16 1837200 2941400 27773 2951300 2722100 3312500 2043800 1822500 1798500 1669200 2416700 1710800 2744700 186850 3015500 2594600 3318800 2101000 1923600 1862300 1636500 2312200 7 7 5 7 7 7 7 7 7 7 7 724600 1262700 9765.9 1206200 737070 835270 940070 667170 723180 656470 946050 674700 1178000 58764 1228900 712090 870020 936220 686500 753110 641580 905720 9 9 2 9 9 9 9 9 9 9 9 790260000 466590000 323670000 8197 1663 7640 43708;43709;43710;43711;43712;43713;43714;43715;43716;43717;43718;43719;43720 52748;52749;52750;52751;52752;52753;52754;52755;52756;52757;52758;52759;52760;52761;52762;52763 52759 16 HQAFEAELSANQSR Unmodified 1586.7437 0.74373232 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.1 1.37 2 1 3 2 2 6 4 33.334 33.306 3 1.5209E-29 10290 20211116_3441_TMUAki_TMT10x_S_F3 200.19 186.2 3198800 5024900 6513 5352500 6363300 6127200 4057200 3991500 3877600 3993600 4739600 2978300 4690000 187830 5448900 6042700 6146200 4230400 4166100 3983200 3900300 4545500 9 9 2 9 9 9 9 9 9 9 9 2410600 3722700 4662.7 3977200 5516400 5433400 3269600 3072500 2966600 3150300 3536500 2244500 3474600 127410 4061200 5232500 5392300 3424600 3245400 3051500 3073500 3393900 5 5 1 5 5 5 5 5 5 5 5 788160 1302100 1850.4 1375400 846950 693840 787630 919040 910990 843340 1203100 733810 1215300 60428 1387700 810230 753930 805840 920790 931750 826770 1151600 4 4 1 4 4 4 4 4 4 4 4 797610000 571420000 226190000 8198 1663 7641 43721;43722;43723;43724;43725;43726;43727;43728;43729;43730 52764;52765;52766;52767;52768;52769;52770;52771;52772;52773 52771 10 HQAFEAEVQANSGAIVK Unmodified 1797.901 0.90096124 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.756 2 3 2 3 4 44.961 45.088 3;4 1.5537E-21 11527 20211116_3444_TMUAki_TMT10x_S_F5 162.79 144.19 8124900 13558000 124650 15284000 12855000 14108000 9870100 10251000 10246000 9662200 11420000 7565800 12657000 828720 15453000 12257000 14358000 10179000 10599000 10449000 9460800 10980000 6 6 4 6 6 6 6 6 6 6 6 4474400 7409100 88542 8571700 9554000 10930000 6568300 6162700 5835500 5678100 6401800 4166600 6917800 502000 8697700 9089700 10882000 6795900 6491900 5988800 5565500 6158000 3 3 2 3 3 3 3 3 3 3 3 3650600 6148900 36105 6712600 3301400 3177900 3301900 4088000 4410700 3984100 5017800 3399300 5739700 326720 6755300 3167400 3475900 3383500 4107300 4460200 3895300 4821700 3 3 2 3 3 3 3 3 3 3 3 2376900000 1749900000 627010000 8199 1663 7642 43731;43732;43733;43734;43735;43736;43737 52774;52775;52776;52777;52778;52779;52780 52778 7 HQAFMAELASNK Oxidation (M) 1361.6398 0.63978452 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 1 0 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 35.102 35.203 3 2.5569E-05 8724 20211116_3433_TMUAki_TMT10x_P_F5 100.31 77.078 1245300 1885700 20126 2330700 1986500 1771600 1328200 1447500 1564800 1247900 1842100 1159600 1761200 130910 2337900 1889300 1832000 1389000 1482100 1591400 1227000 1768400 4 4 3 4 4 4 4 4 4 4 4 568190 847780 10209 1004800 1405000 1212300 736070 641150 665450 530500 796760 529110 791660 68341 1017100 1331000 1209300 779420 677390 684730 522670 764540 1 1 1 1 1 1 1 1 1 1 1 677100 1037900 9918 1325900 581410 559310 592120 806310 899340 717410 1045300 630510 969530 62573 1320900 558260 622630 609560 804680 906650 704320 1003800 3 3 2 3 3 3 3 3 3 3 3 484540000 83112000 401430000 8200 1475 7643 43738;43739;43740 52781;52782;52783;52784 52781 1998 4 HQALQAEIAGHEPR Unmodified 1555.7855 0.78553755 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS 4.33 0.471 2 1 3 31.083 31.085 3;4 3.5258E-09 6784 20211116_3431_TMUAki_TMT10x_P_F4 124.42 109.52 932370 1471200 13532 1503400 1567500 1612500 1009500 875390 916270 831530 1212100 868170 1372900 90969 1533000 1489300 1619500 1050300 925920 946720 813930 1160100 3 3 2 3 3 3 3 3 3 3 3 932370 1471200 13532 1503400 1567500 1612500 1009500 875390 916270 831530 1212100 868170 1372900 90969 1533000 1489300 1619500 1050300 925920 946720 813930 1160100 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 138620000 138620000 0 8201 1663 7644 43741;43742;43743 52785;52786;52787 52786 3 HQAQIDHYLGLANK Unmodified 1606.8216 0.82158871 2903 Q9NQC3;Q9NQC3-2;Q9NQC3-5;Q9NQC3-4;Q9NQC3-6;Q9NQC3-3 RTN4 Reticulon-4 yes no 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 42.294 42.515 3;4 4.0008E-24 12356 20211116_3435_TMUAki_TMT10x_P_F7 196.11 161.85 3648700 5490500 135690 7984100 7532200 6357300 4561200 4522400 4352700 4106600 5136000 3398300 5132600 483350 7944600 7155800 6535500 4775500 4678300 4465000 4027900 4930300 4 4 4 4 4 4 4 4 4 4 4 2305500 3314400 90102 5102000 6486200 5203900 3424700 2746800 2689900 2538600 3050900 2147400 3099400 333670 5080200 6147700 5239900 3611200 2910600 2781500 2487900 2931900 2 2 2 2 2 2 2 2 2 2 2 1343100 2176100 45590 2882000 1046100 1153400 1136500 1775600 1662700 1568100 2085200 1250900 2033100 149680 2864400 1008000 1295600 1164300 1767700 1683500 1540000 1998400 2 2 2 2 2 2 2 2 2 2 2 747110000 591000000 156100000 8202 2903 7645 43744;43745;43746;43747;43748 52788;52789;52790;52791;52792 52788 5 HQDDLQDVIGR Unmodified 1294.6266 0.6265773 1993 Q6P1N9 TATDN1 Putative deoxyribonuclease TATDN1 yes yes 0 0 0 0 By MS/MS 2 0 1 1 35.91 36.009 3 7.5727E-07 8590 20211116_3440_TMUAki_TMT10x_S_F2 129.74 98.37 125820 179480 1267.1 223400 116590 93987 119740 102090 118320 103780 172300 117160 167640 11483 222860 111950 103910 121250 103440 122340 101290 164540 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 125820 179480 1267.1 223400 116590 93987 119740 102090 118320 103780 172300 117160 167640 11483 222860 111950 103910 121250 103440 122340 101290 164540 1 1 1 1 1 1 1 1 1 1 1 5758200 0 5758200 8203 1993 7646 43749 52793 52793 1 HQDPGDPGPGIR Unmodified 1244.5898 0.58979786 2235 Q8ND04;Q8ND04-2;Q8ND04-3 SMG8 Protein SMG8 yes no 0 0 0 0 By MS/MS 2 0 1 1 26.407 26.17 3 0.042117 6038 20211116_3429_TMUAki_TMT10x_P_F2 41.317 25.114 45717 68030 0 82982 350980 84370 41667 123750 55281 56052 59420 42543 63536 4981.1 83620 328560 86750 58859 121810 55790 57533 57192 1 1 0 1 1 1 1 1 1 1 1 45717 68030 0 82982 350980 84370 41667 123750 55281 56052 59420 42543 63536 4981.1 83620 328560 86750 58859 121810 55790 57533 57192 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1142600 1142600 0 8204 2235 7647 43750 52794 52794 1 HQEGEIFDTEK Unmodified 1331.5994 0.59935949 1499 Q02878 RPL6 60S ribosomal protein L6 yes yes 0 0 0 0 By MS/MS By MS/MS 1.92 0.493 2 9 1 2 10 33.474 33.45 3 1.4621E-08 10534 20211116_3439_TMUAki_TMT10x_S_F1 149.93 127.05 5965700 9085500 37507 12344000 16171000 8328100 6372800 5634300 8674600 4406900 9415900 5554100 8490000 573030 12303000 15256000 8671300 7047800 5827800 8750500 4354500 9060200 13 13 6 13 13 13 13 13 13 13 13 2861500 4303500 10167 5665300 13588000 6191800 3319100 2611300 4396800 1973600 4589500 2663700 4020700 310060 5691200 12765000 6194800 3937000 2816600 4432600 1953800 4421300 2 2 1 2 2 2 2 2 2 2 2 3104200 4782000 27339 6679000 2583700 2136300 3053700 3023000 4277800 2433200 4826400 2890400 4469200 262970 6611700 2490200 2476500 3110800 3011200 4317900 2400700 4638900 11 11 5 11 11 11 11 11 11 11 11 882890000 469810000 413080000 8205 1499 7648 43751;43752;43753;43754;43755;43756;43757;43758;43759;43760;43761;43762 52795;52796;52797;52798;52799;52800;52801;52802;52803;52804;52805;52806;52807;52808;52809;52810 52797 16 HQEGEIFDTEKEKYEITEQR Unmodified 2508.1769 0.17686133 1499 Q02878 RPL6 60S ribosomal protein L6 yes yes 0 0 0 2 By MS/MS By MS/MS 3 1.46 3 2 4 3 1 1 7 7 46.218 46.182 4;5 1.6613E-32 15589 20211116_3441_TMUAki_TMT10x_S_F3 196.4 173.75 22038000 52485000 354710 34076000 51664000 111110000 41907000 156560000 134860000 77863000 69813000 20521000 48905000 2140500 37215000 49304000 109460000 45896000 154530000 130830000 79287000 69360000 21 21 11 21 21 21 21 21 21 21 21 9431800 23026000 130160 14832000 34875000 86915000 30862000 73765000 65776000 37181000 32584000 8782100 21455000 1157400 16787000 33340000 83802000 32595000 74568000 64210000 37820000 32460000 10 10 5 10 10 10 10 10 10 10 10 12606000 29459000 224550 19244000 16789000 24195000 11046000 82794000 69089000 40682000 37229000 11739000 27450000 983160 20428000 15964000 25660000 13301000 79961000 66616000 41467000 36900000 11 11 6 11 11 11 11 11 11 11 11 6915300000 4300300000 2615000000 8206 1499 7649 43763;43764;43765;43766;43767;43768;43769;43770;43771;43772;43773;43774;43775;43776 52811;52812;52813;52814;52815;52816;52817;52818;52819;52820;52821;52822;52823;52824;52825;52826;52827;52828;52829;52830;52831 52828 21 HQEHILR Unmodified 931.4988 0.49879801 1615 Q13263;Q13263-2 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 0 By matching By MS/MS 2.5 0.5 1 1 1 1 26.041 25.776 3 0.014435 7462 20211116_3441_TMUAki_TMT10x_S_F3 75.213 48.083 67843 105360 0 90738 78800 82994 73066 67259 61399 50431 85482 63150 98256 3457 93485 75262 84673 74052 68674 63828 49947 81716 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 67843 105360 0 90738 78800 82994 73066 67259 61399 50431 85482 63150 98256 3457 93485 75262 84673 74052 68674 63828 49947 81716 1 1 0 1 1 1 1 1 1 1 1 3025200 306010 2719200 8207 1615 7650 43777;43778 52832 52832 1 HQEPVYSVAFSPDGR Unmodified 1687.7954 0.79543354 2741 Q9BZK7 TBL1XR1 F-box-like/WD repeat-containing protein TBL1XR1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 2 3 41.297 41.413 3 7.474E-20 11305 20211116_3442_TMUAki_TMT10x_S_F4 174.39 161.26 8125300 12171000 31160 13285000 10259000 12217000 8857800 7457400 8604200 8036800 9889000 7565400 11361000 623590 13458000 9800700 12404000 9050300 7839700 8810000 7825300 9499700 6 6 2 6 6 6 6 6 6 6 6 5478300 7927700 6472.1 8266600 7666300 9530200 6280500 4428600 5273100 5257600 6255400 5100600 7398700 458350 8428200 7314200 9516100 6411800 4784900 5443400 5100700 6003900 3 3 1 3 3 3 3 3 3 3 3 2647000 4243200 24688 5018400 2592400 2686500 2577400 3028800 3331100 2779200 3633600 2464800 3962200 165240 5030000 2486500 2888300 2638500 3054700 3366600 2724600 3495800 3 3 1 3 3 3 3 3 3 3 3 1622300000 827650000 794620000 8208 2741 7651 43779;43780;43781;43782;43783 52833;52834;52835;52836;52837;52838;52839 52836 7 HQEYLNSILQHAK Unmodified 1579.8107 0.81068967 1154 P51532-5;P51532-2;P51532-3;P51532-4;P51532;P51531;P51531-2 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 44.615 44.832 4 4.2455E-06 11986 20211116_3436_TMUAki_TMT10x_P_F8 105.03 91.065 8247900 12781000 90049 15824000 7810000 6841200 7624300 6451100 5896100 6320000 9289300 7680300 11937000 761600 15794000 7489400 7514700 7689800 6574800 6194300 6177900 8856000 4 4 4 4 4 4 4 4 4 4 4 1266800 1871100 14078 2334300 1892200 1931600 1248800 973330 866390 851800 1370800 1179600 1747600 126910 2342600 1799000 1971100 1288500 1034300 916030 836920 1306700 1 1 1 1 1 1 1 1 1 1 1 6981100 10910000 75971 13490000 5917800 4909600 6375500 5477700 5029700 5468200 7918500 6500700 10189000 634700 13452000 5690400 5543600 6401300 5540400 5278300 5340900 7549300 3 3 3 3 3 3 3 3 3 3 3 351950000 144800000 207160000 8209 1154 7652 43784;43785;43786 52840;52841;52842;52843 52840 4 HQFAWPFYQPVDAIK Unmodified 1845.9202 0.92024012 1766 Q15059;Q15059-2 BRD3 Bromodomain-containing protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 71.888 71.69 3 1.5049E-06 23155 20211116_3440_TMUAki_TMT10x_S_F2 102.73 83.404 20495000 32207000 16610 32594000 22318000 26160000 23111000 15426000 14273000 17069000 22553000 19080000 30054000 1411700 33128000 21399000 26806000 23128000 16275000 15201000 16603000 21500000 5 5 1 5 5 5 5 5 5 5 5 9266700 14160000 0 14617000 8922400 15006000 10498000 6612500 6388500 7513000 10023000 8626700 13214000 576410 14885000 8582700 15075000 10439000 7173700 6808000 7300500 9556400 2 2 0 2 2 2 2 2 2 2 2 11228000 18048000 16610 17977000 13395000 11154000 12613000 8813900 7884100 9555900 12530000 10453000 16840000 835290 18242000 12816000 11731000 12689000 9101600 8392600 9302200 11943000 3 3 1 3 3 3 3 3 3 3 3 1513600000 928300000 585270000 8210 1766 7653 43787;43788 52844;52845;52846;52847;52848 52847 5 HQGVMVGMGQK 2 Oxidation (M) 1202.5536 0.55361205 1276;1406;1414;1911 P60709;P63261;P68133;P68032;P62736;P63267;Q562R1 ACTB;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2 no no 0 0 2 0 By MS/MS By MS/MS 4.36 1.91 2 1 1 2 4 2 2 9 5 25.525 25.533 2;3;4 5.5209E-05 5506 20211116_3433_TMUAki_TMT10x_P_F5 99.568 83.997 10987000 18731000 76200 15909000 14266000 14897000 12468000 9583500 10614000 9340800 13284000 10229000 17467000 879220 16414000 13629000 15119000 12684000 10005000 10974000 9132700 12732000 15 15 7 15 15 15 15 15 15 15 15 5946200 10018000 50800 7903600 9144300 10071000 6863600 4521700 5223500 4695100 6867700 5536200 9339500 499910 8244700 8708200 10001000 7030600 4882600 5444100 4578400 6574100 10 10 6 10 10 10 10 10 10 10 10 5040600 8713200 25400 8005400 5122000 4825400 5604700 5061800 5390300 4645600 6416400 4693000 8127700 379310 8169300 4920900 5117300 5653300 5122100 5529500 4554300 6157900 5 5 1 5 5 5 5 5 5 5 5 1846700000 1343300000 503410000 8211 1276;1406;1414;1911 7654 43789;43790;43791;43792;43793;43794;43795;43796;43797;43798;43799;43800;43801;43802 52849;52850;52851;52852;52853;52854;52855;52856;52857;52858;52859;52860;52861;52862;52863;52864 52857 1723;1724 16 HQGVMVGMGQK Oxidation (M) 1186.5587 0.55869743 1276;1406;1414;1911 P60709;P63261;P68133;P68032;P62736;P63267;Q562R1 ACTB;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2 no no 0 0 1 0 By MS/MS By MS/MS 3.69 2.42 6 1 2 2 2 3 10 6 28.47 28.494 3 4.2279E-07 6915 20211116_3433_TMUAki_TMT10x_P_F5 134.84 104.23 19904000 32216000 500050 36801000 28957000 30530000 19880000 16854000 17459000 15270000 24663000 18536000 30078000 2242100 37125000 27567000 31182000 20565000 17779000 18123000 14979000 23569000 12 12 11 12 12 12 12 12 12 12 12 13592000 21105000 191600 25493000 22322000 24984000 13121000 9196700 9871200 9007200 15905000 12657000 19709000 1426800 25690000 21184000 25128000 13689000 10142000 10399000 8804700 15156000 7 7 6 7 7 7 7 7 7 7 7 6311800 11111000 308450 11308000 6634500 5546700 6759500 7657600 7587800 6262600 8758000 5879200 10369000 815280 11436000 6383300 6053300 6875600 7637400 7724600 6173900 8412300 5 5 5 5 5 5 5 5 5 5 5 2404900000 1892000000 512890000 8212 1276;1406;1414;1911 7654 43803;43804;43805;43806;43807;43808;43809;43810;43811;43812;43813;43814;43815;43816;43817;43818 52865;52866;52867;52868;52869;52870;52871;52872;52873;52874;52875;52876;52877;52878 52869 1723;1724 14 HQGVMVGMGQK Unmodified 1170.5638 0.5637828 1276;1406;1414;1911 P60709;P63261;P68133;P68032;P62736;P63267;Q562R1 ACTB;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2 no no 0 0 0 0 By MS/MS By MS/MS 5.5 3.2 2 1 3 4 2 30.243 30.293 3 3.132E-05 3970 20211116_3447_TMUAki_TMT10x_S_F8 97.813 80.377 1493400 2034600 13958 2606100 2663000 2154900 1666600 1475800 1530700 1232300 1897700 1390600 1900700 147620 2611500 2528800 2207800 1738400 1527400 1576200 1213600 1819300 3 3 2 3 3 3 3 3 3 3 3 1003100 1362600 13958 1742400 2284400 1849800 1325300 1079300 1100600 915700 1294100 934120 1272900 114120 1752300 2167100 1860500 1387500 1131300 1136300 901060 1242300 2 2 2 2 2 2 2 2 2 2 2 490310 672020 0 863710 378570 305040 341320 396480 430180 316640 603630 456480 627780 33502 859240 361690 347270 350910 396110 439900 312530 576930 1 1 0 1 1 1 1 1 1 1 1 59202000 42548000 16655000 8213 1276;1406;1414;1911 7654 43819;43820;43821;43822;43823;43824 52879;52880;52881;52882;52883;52884 52884 6 HQLLEADISAHEDR Unmodified 1632.7856 0.78559713 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By matching By MS/MS 3 0 2 1 1 33.855 33.724 4 0.00053973 10514 20211116_3441_TMUAki_TMT10x_S_F3 78.69 69.003 211040 352180 9212.1 359040 179030 192780 217560 240400 294590 275940 292350 196570 328650 25634 363310 173190 207720 221050 243080 296250 268040 282090 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 211040 352180 9212.1 359040 179030 192780 217560 240400 294590 275940 292350 196570 328650 25634 363310 173190 207720 221050 243080 296250 268040 282090 1 1 1 1 1 1 1 1 1 1 1 16392000 1288300 15104000 8214 1663 7655 43825;43826 52885 52885 1 HQLLEADISAHEDRLK Unmodified 1873.9646 0.96462413 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS 4 0 1 1 38.868 38.909 4 0.01235 9970 20211116_3431_TMUAki_TMT10x_P_F4 54.412 37.13 996770 1569500 0 1743100 2239300 2311500 1290900 1350000 1437400 1139900 1443800 928020 1465200 90901 1774500 2122700 2298100 1363500 1414800 1456100 1121900 1392600 1 1 0 1 1 1 1 1 1 1 1 996770 1569500 0 1743100 2239300 2311500 1290900 1350000 1437400 1139900 1443800 928020 1465200 90901 1774500 2122700 2298100 1363500 1414800 1456100 1121900 1392600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 65975000 65975000 0 8215 1663 7656 43827 52886 52886 1 HQLTEVGLLDNPELR Unmodified 1732.9108 0.91079765 2247 Q8NEZ5;Q8NEZ5-3 FBXO22 F-box only protein 22 yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 52.929 52.876 3 2.4133E-14 16018 20211116_3442_TMUAki_TMT10x_S_F4 147.24 119.38 9922800 15805000 61644 17103000 12670000 15104000 10561000 13949000 12271000 12051000 13707000 9238400 14753000 772970 17326000 12090000 15484000 10876000 14184000 12460000 11848000 13178000 5 5 3 5 5 5 5 5 5 5 5 4942000 7293400 25056 8028300 7450300 9789000 5955700 5612900 5249600 5105300 6125200 4600900 6808200 369580 8164700 7101300 9769900 6097500 5902300 5402600 5007000 5881700 2 2 1 2 2 2 2 2 2 2 2 4980800 8512100 36588 9074300 5219700 5314600 4605200 8336100 7021400 6945700 7581400 4637500 7944800 403390 9161300 4988600 5713900 4778200 8281400 7057200 6840800 7296200 3 3 2 3 3 3 3 3 3 3 3 926240000 472960000 453280000 8216 2247 7657 43828;43829;43830 52887;52888;52889;52890;52891 52891 5 HQLVHTGEKPFQCTFEGCGKR Unmodified 2515.1849 0.18488079 803 P25490;O15391 YY1;YY2 Transcriptional repressor protein YY1;Transcription factor YY2 yes no 0 0 0 2 By MS/MS 1 0 1 1 37.041 37.041 6 0.00051167 8833 20211116_3428_TMUAki_TMT10x_P_F1 62.684 48.374 399710 701880 2205.8 770660 1223200 1054000 724470 559310 563380 451820 706310 372180 655190 46728 785580 1160500 1045100 755950 590410 585260 445700 676920 1 1 1 1 1 1 1 1 1 1 1 399710 701880 2205.8 770660 1223200 1054000 724470 559310 563380 451820 706310 372180 655190 46728 785580 1160500 1045100 755950 590410 585260 445700 676920 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 68097000 68097000 0 8217 803 7658 43831 52892 52892 1 HQNTEVVLYLAR Unmodified 1441.7678 0.76776223 2006 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog yes yes 0 0 0 0 By MS/MS By matching 6 0 2 1 1 42.694 42.804 3 0.0016973 10575 20211116_3434_TMUAki_TMT10x_P_F6 70.806 43.708 1834200 2949000 2008.8 3109300 4079400 4295800 2674400 2203800 2355400 2098000 2537100 1707800 2752400 185380 3178400 3876300 4256100 2776300 2343100 2416600 2053400 2441800 1 1 1 1 1 1 1 1 1 1 1 1834200 2949000 2008.8 3109300 4079400 4295800 2674400 2203800 2355400 2098000 2537100 1707800 2752400 185380 3178400 3876300 4256100 2776300 2343100 2416600 2053400 2441800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 223850000 168840000 55006000 8218 2006 7659 43832;43833 52893 52893 1 HQNVQLPR Unmodified 990.53591 0.5359118 818 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 27.122 27.112 3 0.00025734 5685 20211116_3433_TMUAki_TMT10x_P_F5 135.77 104.69 219370 369090 4590.4 283920 304410 431750 251330 267320 289620 254940 265940 204290 344080 22083 297870 290820 427030 258900 279720 292120 249500 257270 3 3 2 3 3 3 3 3 3 3 3 219370 369090 4590.4 283920 304410 431750 251330 267320 289620 254940 265940 204290 344080 22083 297870 290820 427030 258900 279720 292120 249500 257270 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17879000 17879000 0 8219 818 7660 43834;43835 52894;52895;52896 52896 3 HQQLLGEVLTQLSSR Unmodified 1707.9268 0.92678206 1655 Q13616 CUL1 Cullin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 64.909 64.715 3 5.2795E-24 20358 20211116_3440_TMUAki_TMT10x_S_F2 187.08 161.6 11932000 19495000 114680 18117000 14705000 19464000 13946000 11613000 11560000 12805000 15083000 11111000 18186000 1074700 18600000 14084000 19569000 14111000 12239000 11990000 12457000 14441000 5 5 4 5 5 5 5 5 5 5 5 8220700 12702000 71746 11967000 10340000 15548000 10034000 7573100 7845800 8471300 9901400 7654300 11849000 717840 12314000 9907000 15439000 10126000 8129200 8150500 8236500 9487900 3 3 2 3 3 3 3 3 3 3 3 3711800 6793100 42931 6149600 4365300 3915500 3911500 4039900 3714300 4333700 5181600 3456400 6336300 356900 6285700 4176900 4129500 3985300 4110000 3839400 4220400 4953100 2 2 2 2 2 2 2 2 2 2 2 2067700000 1180200000 887520000 8220 1655 7661 43836;43837;43838;43839 52897;52898;52899;52900;52901 52901 5 HQSFVLVGETGSGK Unmodified 1444.731 0.73104237 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 0 0 By MS/MS 8 0 1 1 40.45 40.685 3 7.1509E-14 9739 20211116_3447_TMUAki_TMT10x_S_F8 141.85 119.98 1457800 2271300 5515.9 2665700 1415200 1142700 1375900 1856400 1809800 1627400 2097900 1357400 2120900 125400 2668800 1356300 1274000 1411100 1844600 1832400 1598800 2014800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1457800 2271300 5515.9 2665700 1415200 1142700 1375900 1856400 1809800 1627400 2097900 1357400 2120900 125400 2668800 1356300 1274000 1411100 1844600 1832400 1598800 2014800 2 2 2 2 2 2 2 2 2 2 2 71892000 0 71892000 8221 196 7662 43840 52902;52903 52902 2 HQVIQTVHPVEK Unmodified 1413.7728 0.7728476 2792 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein yes yes 0 0 0 0 By MS/MS 5 0 1 1 31.29 31.226 4 0.039818 7161 20211116_3433_TMUAki_TMT10x_P_F5 43.761 28.374 484810 769910 4673.3 698820 666740 852190 577850 379450 365790 368220 564630 451440 718140 47097 720230 637350 848070 584230 409320 388460 360090 538530 1 1 1 1 1 1 1 1 1 1 1 484810 769910 4673.3 698820 666740 852190 577850 379450 365790 368220 564630 451440 718140 47097 720230 637350 848070 584230 409320 388460 360090 538530 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20557000 20557000 0 8222 2792 7663 43841 52904 52904 1 HQVLFIADEIQTGLAR Unmodified 1809.9737 0.97373226 484 P04181;P04181-2 OAT Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form yes no 0 0 0 0 By MS/MS 6 0 1 1 66.152 66.096 3 1.2859E-06 20451 20211116_3445_TMUAki_TMT10x_S_F6 97.579 78.504 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8223 484 7664 43842 52905 52905 1 HQVLLHVGLPPREPVLSCR Unmodified 2206.2157 0.21571064 823 P26992 CNTFR Ciliary neurotrophic factor receptor subunit alpha yes yes 0 0 0 1 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 43.38 43.356 5 6.7794E-13 14356 20211116_3441_TMUAki_TMT10x_S_F3 138.75 123.5 3078600 5025000 78739 5449400 3329000 2507900 3048400 2339300 2178600 2224000 3582400 2867000 4690500 332120 5485300 3189700 2732500 3079800 2383500 2304200 2176800 3412300 4 4 4 4 4 4 4 4 4 4 4 573680 925550 4621.7 1175500 1124500 785870 899290 343650 318060 357140 635560 534190 864570 59584 1175700 1072800 814680 905970 372120 360270 348250 603270 1 1 1 1 1 1 1 1 1 1 1 2504900 4099500 74117 4273900 2204500 1722000 2149100 1995600 1860500 1866800 2946800 2332800 3825900 272540 4309600 2116900 1917800 2173900 2011300 1943900 1828600 2809100 3 3 3 3 3 3 3 3 3 3 3 340920000 115550000 225370000 8224 823 7665 43843;43844;43845 52906;52907;52908;52909 52907 4 HQVLNDRDEEVELCSSVECK Unmodified 2445.09 0.090036934 312 O75153 CLUH Clustered mitochondria protein homolog yes yes 0 0 0 1 By MS/MS By MS/MS 2.33 1.25 2 2 2 3 3 42.398 42.376 4 2.3328E-18 13025 20211116_3439_TMUAki_TMT10x_S_F1 154.26 140.25 12871000 21706000 133600 22992000 17088000 18274000 12307000 13646000 13713000 11675000 16406000 11985000 20258000 1207700 23295000 16270000 18804000 12777000 14049000 13985000 11484000 15743000 13 13 10 13 13 13 13 13 13 13 13 7027100 11308000 54641 11613000 12268000 13756000 8031700 7021000 6930900 5920400 8381000 6543300 10553000 694200 11857000 11659000 13730000 8334300 7445400 7150600 5827500 8040000 5 5 4 5 5 5 5 5 5 5 5 5843700 10397000 78960 11380000 4820500 4518600 4275100 6625500 6782600 5754800 8024800 5441400 9705300 513490 11437000 4611300 5073800 4442600 6603900 6834400 5656300 7702800 8 8 6 8 8 8 8 8 8 8 8 1093900000 780110000 313740000 8225 312 7666 43846;43847;43848;43849;43850;43851 52910;52911;52912;52913;52914;52915;52916;52917;52918;52919;52920;52921;52922 52915 13 HQYINEDEYEVNLK Unmodified 1792.8268 0.82679325 2387 Q93009;Q93009-3 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 47.158 47.147 3 3.2139E-24 14857 20211116_3430_TMUAki_TMT10x_P_F3 196.11 183.58 9795800 18012000 163440 21702000 20086000 21634000 13547000 14195000 16472000 12694000 14067000 9122100 16821000 795000 21878000 19105000 21876000 14173000 14763000 16544000 12459000 13645000 6 6 5 6 6 6 6 6 6 6 6 5878000 11000000 31280 13260000 16987000 18776000 10613000 8662600 10236000 7561500 7995000 5473300 10273000 358490 13450000 16129000 18560000 11087000 9285000 10350000 7430300 7781900 3 3 2 3 3 3 3 3 3 3 3 3917800 7012300 132160 8441500 3099000 2857700 2933600 5532100 6235500 5132300 6072400 3648800 6548600 436510 8427200 2975300 3315800 3086500 5477700 6193200 5029000 5862900 3 3 3 3 3 3 3 3 3 3 3 1379700000 849330000 530330000 8226 2387 7667 43852;43853;43854;43855 52923;52924;52925;52926;52927;52928 52923 6 HRDEVVAEHPDASGEEIEELLR Unmodified 2529.2096 0.20955844 460 O96028;O96028-5;O96028-3 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 0 0 0 1 By MS/MS 1 0 1 1 47.787 47.787 4 3.3713E-07 13152 20211116_3428_TMUAki_TMT10x_P_F1 88.627 71.548 2216200 3175800 12652 3681200 6414300 5348100 2896600 3089500 3210600 2533800 3184600 2063600 2965300 254330 3744700 6062700 5294700 3131800 3238500 3251600 2497600 3072900 1 1 1 1 1 1 1 1 1 1 1 2216200 3175800 12652 3681200 6414300 5348100 2896600 3089500 3210600 2533800 3184600 2063600 2965300 254330 3744700 6062700 5294700 3131800 3238500 3251600 2497600 3072900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 391550000 391550000 0 8227 460 7668 43856 52929 52929 1 HRDFVAEPMGEKPVGSLAGIGEVLGK Oxidation (M) 2708.3956 0.39558507 344 O75531 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes yes 0 0 1 2 By MS/MS By MS/MS 6.18 2.06 2 1 4 6 4 9 8 58.292 58.537 3;4;5 2.3629E-23 17509 20211116_3436_TMUAki_TMT10x_P_F8 148.26 128 177640000 294910000 2399000 285690000 189410000 318110000 209910000 208480000 225360000 225020000 226920000 165410000 275150000 14880000 292580000 182220000 319610000 212330000 217990000 228650000 219080000 218850000 23 23 14 23 23 23 23 23 23 23 23 117770000 190740000 1451100 188220000 124400000 242820000 140310000 134870000 147220000 146830000 148170000 109660000 177970000 9843400 193010000 119710000 241570000 141700000 142940000 149500000 142910000 142900000 15 15 9 15 15 15 15 15 15 15 15 59873000 104170000 947940 97471000 65012000 75297000 69604000 73603000 78145000 78190000 78750000 55755000 97177000 5036400 99578000 62506000 78037000 70627000 75057000 79147000 76175000 75948000 8 8 5 8 8 8 8 8 8 8 8 59241000000 30187000000 29055000000 8228 344 7669 43857;43858;43859;43860;43861;43862;43863;43864;43865;43866;43867;43868;43869;43870;43871;43872;43873 52930;52931;52932;52933;52934;52935;52936;52937;52938;52939;52940;52941;52942;52943;52944;52945;52946;52947;52948;52949;52950;52951 52940 248 22 HRDFVAEPMGEKPVGSLAGIGEVLGK Unmodified 2692.4007 0.40067045 344 O75531 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes yes 0 0 0 2 By MS/MS By MS/MS 6.75 1.88 1 2 4 5 6 6 62.766 62.988 3;4;5 1.2584E-38 20483 20211116_3435_TMUAki_TMT10x_P_F7 180.37 160.65 206460000 336710000 3047600 374730000 220600000 195910000 225910000 117460000 103940000 132050000 212830000 192250000 314330000 19693000 376930000 211810000 208840000 225090000 123820000 114940000 128370000 201940000 20 20 14 20 20 20 20 20 20 20 20 53849000 87510000 1004300 93867000 55363000 80440000 67090000 34349000 31595000 38534000 53992000 50145000 81680000 5326100 95110000 53434000 81739000 66340000 37376000 34491000 37462000 51391000 6 6 5 6 6 6 6 6 6 6 6 152610000 249200000 2043300 280870000 165240000 115470000 158820000 83113000 72346000 93519000 158840000 142110000 232650000 14367000 281820000 158380000 127100000 158750000 86448000 80453000 90907000 150550000 14 14 9 14 14 14 14 14 14 14 14 27058000000 13361000000 13697000000 8229 344 7669 43874;43875;43876;43877;43878;43879;43880;43881;43882;43883;43884;43885 52952;52953;52954;52955;52956;52957;52958;52959;52960;52961;52962;52963;52964;52965;52966;52967;52968;52969;52970;52971;52972 52952 21 HRDYETATLSDIK Unmodified 1547.758 0.7579854 235 O43707;O43707-2 ACTN4 Alpha-actinin-4 yes no 0 0 0 1 By MS/MS 5 0 1 1 36.367 36.339 3 0.00014292 9238 20211116_3433_TMUAki_TMT10x_P_F5 84.566 50.388 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8230 235 7670 43886 52973 52973 1 HRFAEPIGGFQCVFPGC Unmodified 1977.8978 0.8978069 3313 Q9Y570;Q9Y570-4;Q9Y570-2 PPME1 Protein phosphatase methylesterase 1 yes no 0 0 0 1 By MS/MS 1 0 1 1 61.925 61.925 3 0.09386 18894 20211116_3428_TMUAki_TMT10x_P_F1 32.113 19.967 4346100 7377300 84331 6791000 6079300 9977800 5765800 6034100 5511900 5379800 5823800 4047300 6881600 463190 7017000 5826300 9879500 5857100 6314500 5629600 5281100 5608400 1 1 1 1 1 1 1 1 1 1 1 4346100 7377300 84331 6791000 6079300 9977800 5765800 6034100 5511900 5379800 5823800 4047300 6881600 463190 7017000 5826300 9879500 5857100 6314500 5629600 5281100 5608400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 290190000 290190000 0 8231 3313 7671 43887 52974 52974 1 HRFEVNPVWK Unmodified 1310.6884 0.68838969 709 P17812;P17812-2 CTPS1 CTP synthase 1 yes no 0 0 0 1 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 41.208 41.134 4 0.0028934 12019 20211116_3429_TMUAki_TMT10x_P_F2 77.662 60.337 2122700 3288300 57377 4240700 5136100 3922000 3064200 1599600 1681000 1756900 2854600 1976800 3071900 271660 4254200 4876200 3963000 3173700 1748300 1812300 1709400 2717400 3 3 3 3 3 3 3 3 3 3 3 1658500 2591000 50038 3297700 4827100 3636300 2721500 1269000 1321200 1408700 2257300 1544600 2420400 228520 3319400 4578500 3630300 2827300 1413900 1438600 1370100 2148500 2 2 2 2 2 2 2 2 2 2 2 464110 697220 7339.6 942980 309060 285750 342670 330610 359780 348150 597310 432190 651500 43147 934810 297630 332650 346360 334410 373690 339300 568850 1 1 1 1 1 1 1 1 1 1 1 491270000 406390000 84888000 8232 709 7672 43888;43889;43890 52975;52976;52977 52976 3 HRNEVTVELR Unmodified 1251.6684 0.66838253 98 O00505 KPNA3 Importin subunit alpha-4 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 2 2 2 4 2 28.432 28.28 3;4 0.0013004 8410 20211116_3441_TMUAki_TMT10x_S_F3 81.676 48.268 401800 641360 4902.4 606880 503220 565060 478060 382560 397140 422820 498810 374110 598330 33502 620930 481790 574120 483730 399380 411170 411280 478040 4 4 2 4 4 4 4 4 4 4 4 214340 343360 4902.4 316030 282510 387680 267580 232700 235450 244950 278950 199610 320290 23294 325400 270810 387040 271210 244780 242480 238730 267740 2 2 2 2 2 2 2 2 2 2 2 187460 298000 0 290850 220700 177380 210480 149860 161690 177860 219860 174500 278040 10208 295520 210990 187080 212520 154600 168690 172560 210290 2 2 0 2 2 2 2 2 2 2 2 32618000 22916000 9701700 8233 98 7673 43891;43892;43893;43894;43895;43896 52978;52979;52980;52981 52981 4 HRNEVTVELRK Unmodified 1379.7633 0.76334555 98 O00505 KPNA3 Importin subunit alpha-4 yes yes 0 0 0 2 By MS/MS By matching 6 0.816 1 1 1 2 1 29.373 29.456 4 2.6448E-05 6557 20211116_3433_TMUAki_TMT10x_P_F5 102.87 72.045 345880 528070 3201.5 434960 384330 532450 307510 315420 297830 276320 395100 322080 492400 32198 451760 366780 531530 315640 330480 306860 271480 378130 1 1 1 1 1 1 1 1 1 1 1 345880 528070 3201.5 434960 384330 532450 307510 315420 297830 276320 395100 322080 492400 32198 451760 366780 531530 315640 330480 306860 271480 378130 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18494000 18141000 352930 8234 98 7674 43897;43898;43899 52982 52982 1 HRPDLIDFDK Unmodified 1254.6357 0.63568542 1475 Q01082;Q01082-3;Q01082-2;P11277;P11277-2;P11277-3 SPTBN1;SPTB Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, erythrocytic yes no 0 0 0 1 By MS/MS 5 0 1 1 40.62 40.675 3 0.006754 10949 20211116_3433_TMUAki_TMT10x_P_F5 66.538 25.55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8235 1475 7675 43900 52983 52983 1 HRPELIDYGK Unmodified 1226.6408 0.6407708 644 P12814;P12814-2;P12814-3;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 1 By MS/MS 5 0 1 1 33.65 33.595 3 0.0035535 8184 20211116_3433_TMUAki_TMT10x_P_F5 73.632 50.396 706970 1110800 15503 1228400 2254900 2004400 1131400 1169400 1139600 946520 1145900 658370 1037000 94741 1256500 2134800 1975300 1206600 1224500 1159200 933610 1105200 1 1 1 1 1 1 1 1 1 1 1 706970 1110800 15503 1228400 2254900 2004400 1131400 1169400 1139600 946520 1145900 658370 1037000 94741 1256500 2134800 1975300 1206600 1224500 1159200 933610 1105200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78441000 78441000 0 8236 644 7676 43901 52984 52984 1 HRPELIEYDK Unmodified 1298.6619 0.66190017 235 O43707 ACTN4 Alpha-actinin-4 yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 33.619 33.604 4 0.01592 8117 20211116_3433_TMUAki_TMT10x_P_F5 60.641 43.616 856820 1234000 26658 1328000 2255100 1842900 984190 761420 941480 811890 1148500 797990 1151800 115460 1355800 2132000 1821400 1063400 830250 967010 790850 1101500 1 1 1 1 1 1 1 1 1 1 1 856820 1234000 26658 1328000 2255100 1842900 984190 761420 941480 811890 1148500 797990 1151800 115460 1355800 2132000 1821400 1063400 830250 967010 790850 1101500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 130620000 130620000 0 8237 235 7677 43902;43903 52985 52985 1 HRPIGIGVQGLADAFILMR Oxidation (M) 2079.1411 0.14114871 791 P23921 RRM1 Ribonucleoside-diphosphate reductase large subunit yes yes 0 0 1 1 By MS/MS 4 0 1 1 64.757 64.6 4 3.5593E-06 20832 20211116_3442_TMUAki_TMT10x_S_F4 92.307 78.277 915130 1824400 32711 1487900 1141700 1109600 1162300 1107200 1071800 1234400 1299100 852320 1701100 109530 1536100 1097200 1153700 1175100 1129600 1102400 1200300 1246200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 915130 1824400 32711 1487900 1141700 1109600 1162300 1107200 1071800 1234400 1299100 852320 1701100 109530 1536100 1097200 1153700 1175100 1129600 1102400 1200300 1246200 1 1 1 1 1 1 1 1 1 1 1 560020000 0 560020000 8238 791 7678 43904 52986 52986 936 1 HRPQVAIICGSGLGGLTDK Unmodified 1978.0418 0.041828595 469 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 0 1 By MS/MS By MS/MS 2.8 2.64 2 2 1 2 3 47.231 47.097 4 4.9726E-24 12766 20211116_3428_TMUAki_TMT10x_P_F1 173.87 153.86 10820000 17618000 258340 23804000 11701000 13109000 10247000 11272000 11817000 11042000 14560000 10076000 16463000 1131200 23688000 11197000 13973000 10519000 11547000 12051000 10794000 13961000 6 6 5 6 6 6 6 6 6 6 6 3625600 5728000 75886 7843100 6128000 7496600 4820200 3581500 3916000 3442300 4666400 3376300 5352700 406360 7846700 5847500 7570400 4929700 3834800 4050100 3367700 4478300 2 2 2 2 2 2 2 2 2 2 2 7194500 11890000 182450 15961000 5572700 5612000 5427200 7690800 7901500 7600000 9893700 6700000 11110000 724830 15841000 5349500 6402200 5589300 7711900 8000800 7426300 9482500 4 4 3 4 4 4 4 4 4 4 4 1647400000 738810000 908610000 8239 469 7679 43905;43906;43907;43908;43909 52987;52988;52989;52990;52991;52992 52987 6 HSATPFLK Unmodified 899.4865 0.48650199 554 P08243;P08243-2;P08243-3 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 35.34 35.306 3 0.0051776 8145 20211116_3428_TMUAki_TMT10x_P_F1 74.255 60.26 974890 1660300 0 1829800 1166800 993660 1240600 865090 903690 1039900 1440000 907720 1549900 83384 1842200 1120700 1061000 1244100 891280 953120 1008400 1372500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 974890 1660300 0 1829800 1166800 993660 1240600 865090 903690 1039900 1440000 907720 1549900 83384 1842200 1120700 1061000 1244100 891280 953120 1008400 1372500 1 1 0 1 1 1 1 1 1 1 1 49431000 0 49431000 8240 554 7680 43910;43911 52993;52994 52993 2 HSDGNLCVK Unmodified 1028.4709 0.47092828 1101 P49458;P49458-2 SRP9 Signal recognition particle 9 kDa protein yes no 0 0 0 0 By MS/MS By MS/MS 3.5 1.12 1 1 1 1 3 1 29.757 29.627 3 0.00024542 6198 20211116_3431_TMUAki_TMT10x_P_F4 115.7 86.351 1136700 1811200 5620 1545100 1288200 1679200 1211700 991310 969020 980430 1364900 1058400 1689100 98030 1597100 1233400 1686900 1225600 1042300 1010500 957990 1304400 4 4 2 4 4 4 4 4 4 4 4 860860 1358700 4864.8 1102300 994850 1391400 882350 737500 705050 714980 991880 801560 1266800 74923 1147000 951190 1384900 895400 782170 735200 699220 947960 2 2 1 2 2 2 2 2 2 2 2 275850 452530 755.11 442800 293370 287770 329360 253810 263970 265450 373030 256850 422220 23107 450100 282200 301960 330180 260120 275270 258770 356470 2 2 1 2 2 2 2 2 2 2 2 78343000 64628000 13716000 8241 1101 7681 43912;43913;43914;43915 52995;52996;52997;52998 52995 4 HSEAATAQREEWK Unmodified 1541.7223 0.7222686 1675 Q14103;Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes no 0 0 0 1 By MS/MS By MS/MS 4 0.816 2 2 2 4 2 28.975 28.91 3;4 4.4291E-19 5901 20211116_3431_TMUAki_TMT10x_P_F4 183.7 159.87 2470900 3898700 236470 3677800 3015200 3456200 3309500 1536300 1578100 1606300 2864500 2302400 3637000 432860 3764300 2912900 3491500 3288000 1661000 1726900 1565900 2723500 4 4 4 4 4 4 4 4 4 4 4 1650700 2533900 117350 2482100 2220900 2392900 2015000 979940 999150 1064200 1857100 1537800 2364200 254210 2534500 2131500 2411500 2023200 1070200 1091400 1035800 1764900 3 3 3 3 3 3 3 3 3 3 3 820180 1364800 119120 1195700 794290 1063300 1294500 556320 578980 542180 1007500 764550 1272800 178650 1229800 781390 1080000 1264800 590790 635530 530100 958590 1 1 1 1 1 1 1 1 1 1 1 139010000 99395000 39612000 8242 1675 7682 43916;43917;43918;43919;43920;43921 52999;53000;53001;53002;53003 53000 5 HSEAFEALQQK Unmodified 1286.6255 0.62551466 1536 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 3 1 38.212 38.27 3 1.2388E-11 8397 20211116_3434_TMUAki_TMT10x_P_F6 130.09 105.24 2127500 4050300 70625 4413800 5303200 4031500 2833400 3908700 4552200 3020100 4067200 1981400 3780700 286680 4471400 5027100 4127900 3056400 3953700 4538600 2986200 3938500 2 2 2 2 2 2 2 2 2 2 2 1058500 2171300 50110 2326800 4402700 3132200 1882000 2112100 2404200 1621700 2282200 985960 2026600 181300 2374800 4161200 3118200 2056900 2184200 2418700 1604100 2205300 1 1 1 1 1 1 1 1 1 1 1 1069000 1879000 20515 2087000 900430 899370 951450 1796600 2148000 1398400 1785000 995480 1754100 105380 2096600 865900 1009600 999470 1769500 2120000 1382100 1733200 1 1 1 1 1 1 1 1 1 1 1 431060000 302010000 129050000 8243 1536 7683 43922;43923;43924;43925 53004;53005;53006 53005 3 HSEYNPQHSLLAQFR Unmodified 1825.886 0.88597988 1830 Q15797;Q15797-2 SMAD1 Mothers against decapentaplegic homolog 1 yes no 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 38.793 39.14 4 1.3652E-09 10908 20211116_3435_TMUAki_TMT10x_P_F7 127.07 103.59 244640 395430 0 404700 535180 557500 327730 309690 337730 270670 340810 227790 369010 24057 414490 507920 552950 343590 326210 343250 265960 328670 1 1 0 1 1 1 1 1 1 1 1 244640 395430 0 404700 535180 557500 327730 309690 337730 270670 340810 227790 369010 24057 414490 507920 552950 343590 326210 343250 265960 328670 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 98953000 98953000 0 8244 1830 7684 43926;43927 53007 53007 1 HSFGPLDYESLQQELALK Unmodified 2074.0371 0.037120373 397 O94925-3 GLS Glutaminase kidney isoform, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 75.931 75.939 3 7.4831E-08 24496 20211116_3445_TMUAki_TMT10x_S_F6 102.08 89.725 18804000 31288000 472340 30194000 21528000 21241000 23100000 12127000 11800000 12730000 20086000 17512000 29191000 2037400 30746000 20710000 21986000 22999000 12807000 12793000 12408000 19120000 5 5 5 5 5 5 5 5 5 5 5 2472600 4121300 36885 3868200 2288900 3946400 3023800 1913900 1720100 2005300 2560300 2302500 3844700 236800 3965200 2215400 3969900 2988400 2051200 1836700 1954700 2443800 1 1 1 1 1 1 1 1 1 1 1 16332000 27167000 435450 26326000 19239000 17294000 20076000 10213000 10080000 10725000 17526000 15210000 25347000 1800600 26781000 18495000 18016000 20011000 10756000 10956000 10453000 16676000 4 4 4 4 4 4 4 4 4 4 4 1084200000 262590000 821600000 8245 397 7685 43928;43929;43930 53008;53009;53010;53011;53012 53009 5 HSGNITFDEIVNIAR Unmodified 1684.8533 0.85328277 864 P30050;P30050-2 RPL12 60S ribosomal protein L12 yes no 0 0 0 0 By MS/MS By MS/MS 5.39 1.52 1 2 4 4 4 8 10 13 55.272 55.356 2;3 4.2092E-51 17983 20211116_3444_TMUAki_TMT10x_S_F5 280.05 243.35 102960000 181470000 999430 169320000 124040000 175380000 123830000 128870000 124510000 127090000 137720000 95871000 169290000 8022900 173680000 118960000 177250000 125640000 133320000 127110000 124200000 132450000 29 29 16 29 29 29 29 29 29 29 29 55533000 92345000 519170 88219000 70616000 122650000 69591000 70618000 66646000 67366000 73341000 51709000 86152000 4429200 90804000 67701000 121660000 70552000 74328000 68167000 65927000 70542000 15 15 10 15 15 15 15 15 15 15 15 47428000 89126000 480250 81103000 53424000 52728000 54237000 58257000 57867000 59728000 64383000 44162000 83134000 3593700 82881000 51261000 55590000 55085000 58997000 58942000 58273000 61906000 14 14 6 14 14 14 14 14 14 14 14 63510000000 33346000000 30164000000 8246 864 7686 43931;43932;43933;43934;43935;43936;43937;43938;43939;43940;43941;43942;43943;43944;43945;43946;43947;43948;43949;43950;43951;43952;43953 53013;53014;53015;53016;53017;53018;53019;53020;53021;53022;53023;53024;53025;53026;53027;53028;53029;53030;53031;53032;53033;53034;53035;53036;53037;53038;53039;53040;53041;53042;53043;53044 53032 32 HSGPNSADSANDGFVR Unmodified 1629.7132 0.71316047 1181 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 3 1.41 1 1 1 1 1 4 1 28.495 28.388 3 6.5991E-43 6901 20211116_3429_TMUAki_TMT10x_P_F2 226.39 207.29 205150 341800 6041.3 374370 457200 413150 226640 253700 290620 201700 296890 191050 319060 23867 380200 432910 414920 243930 264440 293080 199130 286210 5 5 2 5 5 5 5 5 5 5 5 182620 300200 6041.3 333160 434510 390740 201680 199500 234820 171690 257460 170080 280240 22210 338410 411110 390210 217770 211660 238240 168830 247660 4 4 2 4 4 4 4 4 4 4 4 22523 41599 0 41210 22690 22415 24962 54203 55807 30006 39431 20970 38815 1656.9 41788 21800 24708 26156 52781 54843 30303 38544 1 1 0 1 1 1 1 1 1 1 1 88719000 58416000 30303000 8247 1181 7687 43954;43955;43956;43957;43958 53045;53046;53047;53048;53049 53046 5 HSIEVPIPR Unmodified 1046.5873 0.58727866 1570 Q12860;Q12860-2 CNTN1 Contactin-1 yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 36.893 36.96 3 0.0026523 8261 20211116_3444_TMUAki_TMT10x_S_F5 74.941 50.018 930930 1315500 3932.3 1506300 1193600 1005900 1036000 854980 902310 782520 1133700 866800 1228200 83010 1515700 1140700 1052200 1055000 874730 932010 767230 1086500 2 2 1 2 2 2 2 2 2 2 2 470490 632650 0 728930 784210 666110 539740 399850 428180 376700 570290 438060 590690 41886 735890 745690 676480 556810 419290 445530 368860 545740 1 1 0 1 1 1 1 1 1 1 1 460440 682860 3932.3 777400 409440 339820 496260 455130 474130 405820 563430 428740 637530 41124 779850 395010 375770 498150 455450 486480 398370 540750 1 1 1 1 1 1 1 1 1 1 1 61131000 34662000 26470000 8248 1570 7688 43959;43960 53050;53051 53051 2 HSITGNMTAALQAALK Unmodified 1625.8559 0.85592531 193 O15511-2 ARPC5 Actin-related protein 2/3 complex subunit 5 yes yes 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 80.918 80.923 3 0.11014 28257 20211116_3435_TMUAki_TMT10x_P_F7 18.138 2.2475 1265800 1998900 0 1941800 1260300 1967600 1373800 1046400 1056600 1050600 1152200 1178500 1865000 97198 1985400 1210800 1982100 1377700 1110500 1092200 1025900 1108600 1 1 0 1 1 1 1 1 1 1 1 1265800 1998900 0 1941800 1260300 1967600 1373800 1046400 1056600 1050600 1152200 1178500 1865000 97198 1985400 1210800 1982100 1377700 1110500 1092200 1025900 1108600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 333860000 333860000 0 8249 193 7689 43961;43962 53052 53052 1 HSLAFVVR Unmodified 927.52904 0.5290355 1969 Q6DKI1;Q6DKI1-2 RPL7L1 60S ribosomal protein L7-like 1 yes no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 36.014 36.026 3 0.0010294 8510 20211116_3428_TMUAki_TMT10x_P_F1 105.57 85.931 678220 1013200 19605 1185100 811900 825050 714990 624560 861000 597900 853890 631630 946030 75774 1191400 777200 858210 734830 644330 869280 585040 823940 3 3 2 3 3 3 3 3 3 3 3 261580 333670 378.39 413720 459780 448020 297120 232430 418820 228260 342450 243560 311650 24815 416920 436790 449450 313650 247070 418040 223100 332720 1 1 1 1 1 1 1 1 1 1 1 416640 679490 19226 771340 352120 377030 417870 392130 442180 369640 511440 388070 634380 50959 774510 340410 408760 421180 397260 451240 361940 491220 2 2 1 2 2 2 2 2 2 2 2 46854000 25986000 20869000 8250 1969 7690 43963;43964;43965 53053;53054;53055 53053 3 HSLECTLILTEGDSAK Unmodified 1772.8615 0.86146419 1500 Q02880;Q02880-2 TOP2B DNA topoisomerase 2-beta yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 52.16 52.098 3 6.22E-12 15649 20211116_3442_TMUAki_TMT10x_S_F4 140.27 115.72 18924000 29877000 287890 36768000 26545000 27180000 18707000 17861000 18703000 18096000 23524000 17622000 27905000 1909700 36880000 25270000 28071000 19385000 18638000 19199000 17664000 22544000 7 7 5 7 7 7 7 7 7 7 7 12016000 18810000 198510 22434000 20285000 21571000 12939000 10942000 11338000 11257000 14577000 11190000 17565000 1262700 22618000 19275000 21790000 13459000 11671000 11719000 10981000 13962000 4 4 2 4 4 4 4 4 4 4 4 6907800 11068000 89373 14334000 6259500 5608600 5768600 6919400 7365600 6838900 8946800 6432500 10339000 646920 14262000 5995000 6281300 5926500 6966700 7479500 6682600 8581700 3 3 3 3 3 3 3 3 3 3 3 1481300000 756290000 725060000 8251 1500 7691 43966;43967;43968;43969 53056;53057;53058;53059;53060;53061;53062 53062 7 HSLEEDEGSDFITENR Unmodified 1876.8075 0.80751437 2956 Q9NUQ3 TXLNG Gamma-taxilin yes yes 0 0 0 0 By MS/MS By MS/MS 1.25 0.433 3 1 2 2 40.767 40.722 3 2.0234E-69 12326 20211116_3439_TMUAki_TMT10x_S_F1 299.76 283.41 520080 917020 11180 1167000 393950 339240 353890 659320 805820 602110 820340 484330 856610 29399 1160500 377410 403850 375060 652490 800520 590410 790900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 520080 917020 11180 1167000 393950 339240 353890 659320 805820 602110 820340 484330 856610 29399 1160500 377410 403850 375060 652490 800520 590410 790900 2 2 1 2 2 2 2 2 2 2 2 240840000 0 240840000 8252 2956 7692 43970;43971;43972;43973 53063;53064;53065;53066 53065 4 HSLSGRPLK Unmodified 993.57196 0.57196295 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 1 By MS/MS By MS/MS 2.33 1.33 3 3 1 1 1 7 2 28.546 28.462 3;4 0.00091409 6945 20211116_3429_TMUAki_TMT10x_P_F2 94.409 39.633 956940 1670700 17565 1382100 1277700 1946800 2990600 2229900 1123200 1237700 1175200 891130 1557900 99407 1438800 1269200 1954800 2886100 2223200 1226200 1249700 1132100 6 6 5 6 6 6 6 6 6 6 6 868960 1504100 17550 1249500 1170600 1852000 2875800 2144600 1018100 1147600 1054900 809210 1402600 91832 1301700 1166300 1856100 2770400 2135800 1118300 1161900 1016500 5 5 4 5 5 5 5 5 5 5 5 87980 166590 14.408 132650 107100 94775 114790 85313 105060 90134 120290 81919 155320 7575.4 137160 102890 98674 115730 87362 107840 87831 115570 1 1 1 1 1 1 1 1 1 1 1 78357000 71801000 6555400 8253 1171 7693 43974;43975;43976;43977;43978;43979;43980;43981;43982 53067;53068;53069;53070;53071;53072;53073 53070 7 HSMDLSYALETVLNK Oxidation (M) 1735.8451 0.84508585 3258 Q9Y312 AAR2 Protein AAR2 homolog yes yes 0 0 1 0 By MS/MS 7 0 1 1 70.961 71.357 3 3.6244E-05 24147 20211116_3435_TMUAki_TMT10x_P_F7 93.823 80.622 2224000 4141200 0 3456400 2534900 5602000 2919000 3057800 3226500 3037500 3059700 2070500 3861600 157990 3606600 2438200 5517500 2950300 3236700 3263100 2967400 2956700 1 1 0 1 1 1 1 1 1 1 1 2224000 4141200 0 3456400 2534900 5602000 2919000 3057800 3226500 3037500 3059700 2070500 3861600 157990 3606600 2438200 5517500 2950300 3236700 3263100 2967400 2956700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 340500000 340500000 0 8254 3258 7694 43983 53074 53074 3238 1 HSMLFIEASAK Oxidation (M) 1248.6173 0.61725816 2880 Q9NP72;Q9NP72-2;Q9NP72-3 RAB18 Ras-related protein Rab-18 yes no 0 0 1 0 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 39.332 39.422 3 0.0020047 9346 20211116_3445_TMUAki_TMT10x_S_F6 72.29 41.562 433800 672960 6524.9 742610 419670 362440 449190 414420 391850 363830 536780 403960 628200 41848 746980 403530 393840 452310 417210 406290 357420 513330 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 433800 672960 6524.9 742610 419670 362440 449190 414420 391850 363830 536780 403960 628200 41848 746980 403530 393840 452310 417210 406290 357420 513330 1 1 1 1 1 1 1 1 1 1 1 158890000 87307000 71586000 8255 2880 7695 43984;43985;43986 53075;53076 53076 2999 2 HSMNPFCEIAVEEAVR Unmodified 1887.8608 0.86075269 968 P38117;P38117-2 ETFB Electron transfer flavoprotein subunit beta yes no 0 0 0 0 By MS/MS 4 0.816 1 1 1 3 57.993 57.877 3 0.00018557 20381 20211116_3441_TMUAki_TMT10x_S_F3 78.166 70.964 8850300 15444000 174490 14900000 10866000 9273400 10195000 12449000 11226000 10803000 12773000 8241800 14409000 924600 15155000 10413000 9865600 10408000 12448000 11430000 10619000 12273000 4 4 4 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8850300 15444000 174490 14900000 10866000 9273400 10195000 12449000 11226000 10803000 12773000 8241800 14409000 924600 15155000 10413000 9865600 10408000 12448000 11430000 10619000 12273000 4 4 4 4 4 4 4 4 4 4 4 719710000 0 719710000 8256 968 7696 43987;43988;43989 53077;53078;53079;53080 53077 4 HSMNPFCEIAVEEAVR Oxidation (M) 1903.8557 0.85566731 968 P38117;P38117-2 ETFB Electron transfer flavoprotein subunit beta yes no 0 0 1 0 By MS/MS 4 0 1 1 51.752 51.83 3 0.0003742 15537 20211116_3442_TMUAki_TMT10x_S_F4 72.207 65.626 2129700 3300300 38014 3931700 1717700 1817800 1691500 2524400 2769400 2583100 2932700 1983300 3081800 206230 3934700 1648700 1998100 1750500 2532700 2776000 2520300 2824000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2129700 3300300 38014 3931700 1717700 1817800 1691500 2524400 2769400 2583100 2932700 1983300 3081800 206230 3934700 1648700 1998100 1750500 2532700 2776000 2520300 2824000 1 1 1 1 1 1 1 1 1 1 1 700420000 0 700420000 8257 968 7696 43990 53081 53081 1224 1 HSNVVILTTSNITEK Unmodified 1654.889 0.88899957 1821 Q15645 TRIP13 Pachytene checkpoint protein 2 homolog yes yes 0 0 0 0 By matching By MS/MS 6.67 0.471 1 2 1 2 45.881 46.401 3 8.307E-24 14366 20211116_3446_TMUAki_TMT10x_S_F7 180.06 130.94 3567800 6269800 81191 6542500 3276100 3032000 2953800 5047300 4818300 4412400 5472100 3322500 5851400 367370 6602600 3138100 3350600 3070700 5011000 4843400 4335500 5258500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3567800 6269800 81191 6542500 3276100 3032000 2953800 5047300 4818300 4412400 5472100 3322500 5851400 367370 6602600 3138100 3350600 3070700 5011000 4843400 4335500 5258500 2 2 2 2 2 2 2 2 2 2 2 1231800000 597690000 634160000 8258 1821 7697 43991;43992;43993 53082;53083;53084 53083 3 HSPQEAPHVQYER Unmodified 1576.7383 0.73825301 823 P26992 CNTFR Ciliary neurotrophic factor receptor subunit alpha yes yes 0 0 0 0 By MS/MS 3 0 1 1 26.685 26.392 4 2.0616E-09 7661 20211116_3441_TMUAki_TMT10x_S_F3 132.97 117.1 46338 104110 15.06 92397 66763 55928 75380 48025 59125 41157 75901 43146 97098 4141.9 94542 64233 59047 75507 49022 61457 40479 72699 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 46338 104110 15.06 92397 66763 55928 75380 48025 59125 41157 75901 43146 97098 4141.9 94542 64233 59047 75507 49022 61457 40479 72699 1 1 1 1 1 1 1 1 1 1 1 4236400 0 4236400 8259 823 7698 43994 53085 53085 1 HSPTEDEESAKAEADAYIR Unmodified 2117.9502 0.95015586 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.08 0.954 4 4 3 1 5 7 44.996 44.873 3;4 1.3103E-50 11964 20211116_3428_TMUAki_TMT10x_P_F1 227.06 210.18 22544000 45431000 296800 49283000 38551000 57538000 30553000 38192000 44325000 32955000 35433000 20992000 42406000 1952500 50128000 36778000 57672000 31836000 39651000 44175000 32401000 34456000 16 16 12 16 16 16 16 16 16 16 16 14238000 30078000 148830 31636000 32362000 50401000 25032000 25035000 29899000 21792000 22843000 13257000 28072000 1161600 32444000 30851000 49618000 25925000 26637000 29953000 21417000 22254000 8 8 5 8 8 8 8 8 8 8 8 8306100 15353000 147970 17647000 6189300 7136800 5520800 13157000 14427000 11162000 12590000 7734900 14335000 790880 17684000 5926400 8054100 5910600 13014000 14222000 10984000 12202000 8 8 7 8 8 8 8 8 8 8 8 5245300000 3140400000 2104900000 8260 1057 7699 43995;43996;43997;43998;43999;44000;44001;44002;44003;44004;44005;44006 53086;53087;53088;53089;53090;53091;53092;53093;53094;53095;53096;53097;53098;53099;53100;53101 53087 16 HSQAVEELAEQLEQTK Unmodified 1838.901 0.90102082 934 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 By MS/MS By MS/MS 3.25 0.968 2 3 2 1 5 3 60.993 60.783 3;4 1.2072E-35 18774 20211116_3431_TMUAki_TMT10x_P_F4 205.52 183.97 31493000 52417000 720680 54614000 35617000 46088000 36595000 29843000 33238000 32887000 39307000 29328000 48918000 3330300 55432000 34219000 47112000 36965000 31253000 34176000 31994000 37730000 9 9 8 9 9 9 9 9 9 9 9 19013000 30427000 440690 31371000 23688000 34810000 23843000 17810000 19646000 19195000 22370000 17706000 28395000 2042400 31988000 22743000 34868000 24047000 19007000 20267000 18690000 21496000 5 5 4 5 5 5 5 5 5 5 5 12480000 21990000 279990 23243000 11929000 11278000 12751000 12034000 13592000 13692000 16937000 11622000 20523000 1287900 23444000 11476000 12244000 12917000 12246000 13910000 13304000 16235000 4 4 4 4 4 4 4 4 4 4 4 5561500000 3252200000 2309300000 8261 934 7700 44007;44008;44009;44010;44011;44012;44013;44014 53102;53103;53104;53105;53106;53107;53108;53109;53110;53111 53106 10 HSQAVEELAEQLEQTKR Unmodified 1995.0021 0.0021318501 934 P35579 MYH9 Myosin-9 yes yes 0 0 0 1 By MS/MS 6 0 1 1 54.087 54.192 4 1.7022E-15 15553 20211116_3445_TMUAki_TMT10x_S_F6 148.56 135.33 1577300 2859500 57197 2933400 2014100 1958500 1747700 3771800 2844500 2868600 2659400 1469000 2668500 190190 2972800 1927900 2096100 1820600 3716400 2839200 2838900 2571100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1577300 2859500 57197 2933400 2014100 1958500 1747700 3771800 2844500 2868600 2659400 1469000 2668500 190190 2972800 1927900 2096100 1820600 3716400 2839200 2838900 2571100 1 1 1 1 1 1 1 1 1 1 1 439030000 0 439030000 8262 934 7701 44015 53112 53112 1 HSQDLAFLSMLNDIAAVPATAMPFR 2 Oxidation (M) 2747.3411 0.34110666 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 2 0 By MS/MS By MS/MS 1 0 2 1 1 78.237 78.21 3 0.012654 27488 20211116_3439_TMUAki_TMT10x_S_F1 42.708 35.01 3269600 5978500 0 5659000 4022900 5469600 4637800 3488500 3558000 3677900 4462100 3043900 5577400 227880 5792900 3869300 5539200 4638800 3652500 3699000 3584200 4276400 2 2 0 2 2 2 2 2 2 2 2 1663300 2802800 0 2683400 1622400 3460800 2267100 1768800 1792700 1712700 2250300 1548500 2614900 116310 2757600 1570500 3439600 2251200 1882100 1860700 1675100 2156600 1 1 0 1 1 1 1 1 1 1 1 1606300 3175700 0 2975600 2400400 2008800 2370700 1719700 1765300 1965100 2211800 1495400 2962500 111570 3035300 2298800 2099500 2387500 1770400 1838300 1909100 2119800 1 1 0 1 1 1 1 1 1 1 1 1658600000 781810000 876770000 8263 1092 7702 44016;44017 53113;53114 53114 1427;1428 2 HSQEELLQR Unmodified 1138.5731 0.57308516 1995 Q6P2E9;Q6P2E9-2 EDC4 Enhancer of mRNA-decapping protein 4 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 28.642 28.408 3 1.1734E-05 8501 20211116_3441_TMUAki_TMT10x_S_F3 123.86 97.074 141520 204810 0 218560 233090 261180 150770 132900 130390 136730 173930 131770 191160 12597 222640 221400 260570 156600 141710 135090 133380 166440 1 1 0 1 1 1 1 1 1 1 1 141520 204810 0 218560 233090 261180 150770 132900 130390 136730 173930 131770 191160 12597 222640 221400 260570 156600 141710 135090 133380 166440 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4747500 4747500 0 8264 1995 7703 44018;44019;44020 53115;53116;53117 53116 3 HSQEIAQFQAELAEAR Unmodified 1826.8911 0.89112484 1548 Q08378;Q08378-2 GOLGA3 Golgin subfamily A member 3 yes no 0 0 0 0 By MS/MS By matching 3 0.707 1 2 1 3 1 51.311 51 3 1.2859E-06 14702 20211116_3431_TMUAki_TMT10x_P_F4 97.579 87.822 2434000 3740700 17821 3663600 3647000 4447300 3034100 2961400 2933300 2646900 3308900 2266400 3490200 235390 3754600 3482600 4448900 3106600 3076600 3001800 2598100 3180300 1 1 1 1 1 1 1 1 1 1 1 2434000 3740700 17821 3663600 3647000 4447300 3034100 2961400 2933300 2646900 3308900 2266400 3490200 235390 3754600 3482600 4448900 3106600 3076600 3001800 2598100 3180300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 295860000 185010000 110860000 8265 1548 7704 44021;44022;44023;44024 53118;53119;53120 53120 3 HSQELPAILDDTTLSGSDR Unmodified 2053.9916 0.99162674 1754 Q15021 NCAPD2 Condensin complex subunit 1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 54.701 54.526 3 0.0094927 17902 20211116_3430_TMUAki_TMT10x_P_F3 48.007 36.03 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8266 1754 7705 44025 53121 53121 1 HSQELYATATLQRPGSLAAGSR Unmodified 2313.1826 0.18255583 3218 Q9UQB3;Q9UQB3-2 CTNND2 Catenin delta-2 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 37.889 37.846 4 1.6532E-19 9080 20211116_3428_TMUAki_TMT10x_P_F1 150.09 128.89 713760 1133100 2740 1437800 985010 908780 626720 882410 1039400 678170 1044100 664600 1058500 65528 1437400 935630 957840 667220 892390 1039500 670750 1007100 2 2 2 2 2 2 2 2 2 2 2 270070 397080 464.87 507260 684230 661300 382410 350960 413660 288950 393580 251470 370930 28625 512010 648510 657210 404640 370640 418750 284760 380290 1 1 1 1 1 1 1 1 1 1 1 443690 736030 2275.1 930590 300780 247480 244310 531450 625750 389220 650550 413130 687520 36903 925400 287120 300630 262570 521750 620780 385990 626790 1 1 1 1 1 1 1 1 1 1 1 212470000 160590000 51880000 8267 3218 7706 44026;44027 53122;53123 53122 2 HSQFIGYPITLFVEK Unmodified 1777.9403 0.94030686 544 P07900;P07900-2;Q58FG0 HSP90AA1;HSP90AA5P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 yes no 0 0 0 0 By MS/MS By MS/MS 3.11 1.59 2 13 14 5 1 1 2 14 24 60.699 60.639 2;3;4 3.44E-33 25835 20211116_3429_TMUAki_TMT10x_P_F2 223.06 203.3 137070000 232990000 1634300 202900000 173970000 236860000 177670000 170970000 161150000 169430000 183000000 127630000 217290000 12157000 209620000 166920000 237720000 179510000 177110000 165440000 165540000 175860000 63 63 37 63 63 63 63 63 63 63 63 65155000 106630000 871960 93076000 68664000 139260000 82095000 80451000 76064000 80202000 84731000 60669000 99450000 5880100 96601000 66204000 137700000 82383000 84757000 77954000 78340000 81469000 18 18 10 18 18 18 18 18 18 18 18 71920000 126350000 762380 109820000 105300000 97601000 95572000 90524000 85086000 89226000 98271000 66964000 117840000 6277200 113020000 100720000 100020000 97127000 92357000 87487000 87196000 94390000 45 45 27 45 45 45 45 45 45 45 45 53542000000 29106000000 24436000000 8268 544 7707 44028;44029;44030;44031;44032;44033;44034;44035;44036;44037;44038;44039;44040;44041;44042;44043;44044;44045;44046;44047;44048;44049;44050;44051;44052;44053;44054;44055;44056;44057;44058;44059;44060;44061;44062;44063;44064;44065 53124;53125;53126;53127;53128;53129;53130;53131;53132;53133;53134;53135;53136;53137;53138;53139;53140;53141;53142;53143;53144;53145;53146;53147;53148;53149;53150;53151;53152;53153;53154;53155;53156;53157;53158;53159;53160;53161;53162;53163;53164;53165;53166;53167;53168;53169;53170;53171;53172;53173;53174;53175;53176;53177;53178;53179;53180;53181;53182;53183;53184;53185;53186;53187;53188;53189;53190;53191;53192;53193 53131 70 HSQFLGYPITLYLEK Unmodified 1807.9509 0.95087155 1914 Q58FF8 HSP90AB2P Putative heat shock protein HSP 90-beta 2 yes yes 0 0 0 0 By MS/MS By MS/MS 3.32 2.2 5 14 11 2 1 2 5 11 29 67.886 67.83 2;3;4 2.7206E-33 23477 20211116_3440_TMUAki_TMT10x_S_F2 226.23 0 144750000 261500000 1165700 226250000 193880000 254000000 183400000 204680000 175410000 181870000 196810000 134770000 243870000 12319000 233710000 185620000 255940000 186330000 209910000 179560000 178560000 189200000 69 69 35 69 69 69 69 69 69 69 69 67656000 116750000 54035 104280000 77954000 150020000 85817000 90887000 82989000 83308000 84949000 62988000 108890000 5059500 107950000 74898000 148680000 86549000 95166000 84621000 81675000 81887000 16 16 4 16 16 16 16 16 16 16 16 77089000 144750000 1111700 121960000 115930000 103970000 97584000 113790000 92426000 98563000 111860000 71780000 134980000 7259900 125760000 110720000 107250000 99783000 114740000 94943000 96889000 107310000 53 53 31 53 53 53 53 53 53 53 53 75243000000 44585000000 30657000000 8269 1914 7708 44066;44067;44068;44069;44070;44071;44072;44073;44074;44075;44076;44077;44078;44079;44080;44081;44082;44083;44084;44085;44086;44087;44088;44089;44090;44091;44092;44093;44094;44095;44096;44097;44098;44099;44100;44101;44102;44103;44104;44105 53194;53195;53196;53197;53198;53199;53200;53201;53202;53203;53204;53205;53206;53207;53208;53209;53210;53211;53212;53213;53214;53215;53216;53217;53218;53219;53220;53221;53222;53223;53224;53225;53226;53227;53228;53229;53230;53231;53232;53233;53234;53235;53236;53237;53238;53239;53240;53241;53242;53243;53244;53245;53246;53247;53248;53249;53250;53251;53252;53253;53254;53255;53256;53257;53258;53259;53260;53261;53262;53263;53264;53265;53266;53267;53268;53269 53222 76 HSSLAGCQIINYR Unmodified 1517.7409 0.74089555 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.6 1.02 1 1 2 1 3 2 36.937 36.837 3 1.3211E-19 10195 20211116_3429_TMUAki_TMT10x_P_F2 192.68 168.93 1695300 2724300 7092.2 3196100 3170600 3002100 2112700 2636800 2402900 2015100 2698100 1578500 2543800 164350 3224300 3013700 3062100 2207300 2680700 2442300 1993700 2593600 4 4 2 4 4 4 4 4 4 4 4 1090100 1706900 2053.1 1944500 2642500 2528500 1588500 1799400 1582800 1326900 1803300 1015000 1593600 111840 1975700 2507300 2523400 1666200 1852200 1618300 1315300 1732700 2 2 1 2 2 2 2 2 2 2 2 605170 1017400 5039.1 1251600 528020 473680 524230 837380 820070 688300 894830 563500 950200 52507 1248600 506420 538710 541100 828570 823990 678370 860900 2 2 1 2 2 2 2 2 2 2 2 530630000 315010000 215620000 8270 1471 7709 44106;44107;44108;44109;44110 53270;53271;53272;53273 53270 4 HSSVYPTQEELEAVQNMVSHTER Oxidation (M) 2686.2293 0.22930761 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 1 0 By MS/MS 5 0 1 1 49.47 49.65 4 0.015958 13343 20211116_3444_TMUAki_TMT10x_S_F5 42.185 38.078 1777300 2822600 0 2905900 1588600 1496900 1350500 2398900 2331900 1902900 2319800 1654600 2634100 122300 2937500 1515800 1632100 1412700 2378600 2329000 1878900 2238200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1777300 2822600 0 2905900 1588600 1496900 1350500 2398900 2331900 1902900 2319800 1654600 2634100 122300 2937500 1515800 1632100 1412700 2378600 2329000 1878900 2238200 1 1 0 1 1 1 1 1 1 1 1 328270000 0 328270000 8271 1576 7710 44111 53274 53274 2130 1 HSVDLIGRPFGSK Unmodified 1411.7572 0.75719754 2464 Q96FX7 TRMT61A tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A yes yes 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 41.65 41.678 4 0.00022988 10627 20211116_3428_TMUAki_TMT10x_P_F1 86.944 66.156 1454800 2192000 12266 2724500 3168400 2768600 1773500 2038100 2062300 1763800 2135000 1354600 2047400 153380 2742500 3003500 2801400 1880800 2100800 2088000 1733900 2057300 2 2 1 2 2 2 2 2 2 2 2 1014600 1528900 12266 1927400 2794300 2411500 1395500 1386400 1413500 1210000 1507500 944740 1428200 120470 1945300 2644900 2403800 1489200 1456100 1440600 1189000 1451300 1 1 1 1 1 1 1 1 1 1 1 440240 663070 0 797180 374090 357120 377960 651680 648810 553820 627540 409880 619220 32911 797200 358620 397580 391560 644780 647450 544920 606020 1 1 0 1 1 1 1 1 1 1 1 188290000 157460000 30823000 8272 2464 7711 44112;44113 53275;53276 53275 2 HSVEVQVNVMSENILTGAK Oxidation (M) 2070.0416 0.041553824 64 O00154-4;O00154;O00154-6;O00154-7;O00154-5;O00154-2;O00154-3 ACOT7 Cytosolic acyl coenzyme A thioester hydrolase yes no 0 0 1 0 By MS/MS 6 0 1 1 52.574 52.673 3 0.035208 14538 20211116_3434_TMUAki_TMT10x_P_F6 42.529 31.585 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8273 64 7712 44114 53277 53277 31 1 HSVEVTNCFSVPHNESEDEVAVDMEFAK Oxidation (M) 3221.3918 0.39175784 81 O00303 EIF3F Eukaryotic translation initiation factor 3 subunit F yes yes 0 0 1 0 By MS/MS 1 0 1 1 55.47 55.17 4 3.8493E-18 18148 20211116_3439_TMUAki_TMT10x_S_F1 132.35 120.5 940110 2176600 25528 1942800 1048400 1344200 949760 1245900 1660000 1070400 1358300 875520 2030100 103250 1989500 1004300 1404100 990530 1266500 1647000 1052600 1319600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 940110 2176600 25528 1942800 1048400 1344200 949760 1245900 1660000 1070400 1358300 875520 2030100 103250 1989500 1004300 1404100 990530 1266500 1647000 1052600 1319600 1 1 1 1 1 1 1 1 1 1 1 161620000 0 161620000 8274 81 7713 44115 53278 53278 49 1 HSVGVVIGR Unmodified 922.53485 0.53484916 2380 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 3.88 2.98 4 1 2 1 4 4 30.255 30.424 2;3 0.00013669 8039 20211116_3439_TMUAki_TMT10x_S_F1 126.24 100.67 823440 1359300 11543 1288700 984630 1144600 905500 797470 838970 824980 989560 766760 1268100 76221 1317500 942610 1167200 920560 829160 861760 804580 949930 7 7 5 7 7 7 7 7 7 7 7 376770 601490 1014.5 579400 487950 651390 389260 354130 371020 362070 431810 350810 561170 31864 593720 465450 652470 399440 375290 380410 353290 414670 3 3 2 3 3 3 3 3 3 3 3 446670 757810 10528 709270 496690 493260 516240 443340 467940 462910 557740 415950 706930 44356 723770 477170 514700 521130 453870 481350 451300 535260 4 4 3 4 4 4 4 4 4 4 4 84237000 43498000 40738000 8275 2380 7714 44116;44117;44118;44119;44120;44121;44122;44123 53279;53280;53281;53282;53283;53284;53285;53286 53283 8 HSVSVEVQMQR Oxidation (M) 1314.635 0.63503349 2288 Q8TEW0;Q8TEW0-5;Q8TEW0-6;Q8TEW0-11;Q8TEW0-3;Q8TEW0-7;Q8TEW0-4;Q8TEW0-2 PARD3 Partitioning defective 3 homolog yes no 0 0 1 0 By MS/MS 3 0 1 1 27.642 27.358 3 0.00058014 8034 20211116_3441_TMUAki_TMT10x_S_F3 81.799 64.077 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8276 2288 7715 44124 53287 53287 2656 1 HTDDEMTGYVATR Oxidation (M) 1510.6358 0.63582135 1849 Q16539;Q16539-2;Q16539-5;Q16539-3;Q16539-4 MAPK14 Mitogen-activated protein kinase 14 yes no 0 0 1 0 By MS/MS 2 0 1 1 26.994 26.756 3 0.0021525 6302 20211116_3429_TMUAki_TMT10x_P_F2 63.181 50.912 41967 62021 3284.9 56727 62513 81908 42054 118170 44261 38585 58532 39100 57852 6828.5 58621 59625 82704 43795 115940 45438 40963 56022 1 1 1 1 1 1 1 1 1 1 1 41967 62021 3284.9 56727 62513 81908 42054 118170 44261 38585 58532 39100 57852 6828.5 58621 59625 82704 43795 115940 45438 40963 56022 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1648400 1648400 0 8277 1849 7716 44125 53288 53288 2462 1 HTDPVPDPR Unmodified 1032.4989 0.49885759 697 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 27.215 26.954 3 0.033944 7921 20211116_3441_TMUAki_TMT10x_S_F3 47.187 26.632 220580 369630 5692.7 313950 254050 263820 273830 190470 205190 218840 281830 205410 344700 22399 323470 244330 270210 274600 198200 214470 212560 269500 2 2 1 2 2 2 2 2 2 2 2 99516 178110 0 148150 108730 153590 130800 82659 106860 89713 120500 92646 166080 6716.5 153340 104700 154540 130780 87832 110240 87328 115820 1 1 0 1 1 1 1 1 1 1 1 121060 191520 5692.7 165800 145320 110230 143030 107810 98327 129120 161330 112760 178620 15682 170130 139620 115670 143820 110370 104220 125230 153680 1 1 1 1 1 1 1 1 1 1 1 8723900 2470400 6253500 8278 697 7717 44126;44127 53289;53290 53290 2 HTDVQFYTEVGEITTDLGK Unmodified 2152.0324 0.032428925 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 0 0 By MS/MS By MS/MS 2.4 1.02 2 4 2 2 5 5 74.841 74.749 3;4 1.8334E-24 25583 20211116_3429_TMUAki_TMT10x_P_F2 176.11 159.23 52908000 90905000 1111900 83887000 62293000 89091000 69190000 61099000 62332000 65991000 68234000 49269000 84798000 5305500 86152000 59954000 89810000 69610000 63680000 63922000 64249000 65640000 18 18 11 18 18 18 18 18 18 18 18 27902000 47036000 764630 42634000 28166000 58563000 35722000 32697000 33820000 35064000 35126000 25984000 43874000 2939900 44043000 27237000 58096000 35780000 34621000 34535000 34148000 33844000 9 9 5 9 9 9 9 9 9 9 9 25006000 43868000 347250 41253000 34127000 30528000 33468000 28402000 28513000 30927000 33108000 23285000 40924000 2365600 42109000 32717000 31713000 33829000 29060000 29387000 30101000 31796000 9 9 6 9 9 9 9 9 9 9 9 9646100000 5894600000 3751500000 8279 3317 7718 44128;44129;44130;44131;44132;44133;44134;44135;44136;44137 53291;53292;53293;53294;53295;53296;53297;53298;53299;53300;53301;53302;53303;53304;53305;53306;53307;53308 53293 18 HTEAEIAAACETFLK Unmodified 1689.8032 0.80322103 2747 Q9C0B1 FTO Alpha-ketoglutarate-dependent dioxygenase FTO yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 56.797 56.665 3 4.8138E-05 18848 20211116_3430_TMUAki_TMT10x_P_F3 91.076 71.753 24685000 42727000 55004 43800000 31718000 39665000 26740000 39293000 37228000 36789000 36261000 22981000 39873000 1817900 44546000 30267000 40655000 27708000 39894000 37380000 36033000 35010000 6 6 2 6 6 6 6 6 6 6 6 9774400 15261000 4222.7 16782000 14823000 24290000 12390000 16469000 14871000 14634000 13355000 9100400 14246000 816530 17125000 14148000 24106000 12772000 17084000 14966000 14368000 12930000 2 2 1 2 2 2 2 2 2 2 2 14910000 27466000 50781 27019000 16895000 15375000 14350000 22824000 22357000 22155000 22906000 13881000 25627000 1001400 27421000 16119000 16548000 14937000 22810000 22414000 21665000 22080000 4 4 1 4 4 4 4 4 4 4 4 1590000000 881950000 708090000 8280 2747 7719 44138;44139;44140;44141 53309;53310;53311;53312;53313;53314 53309 6 HTEDREEGMDVEEGEMGDEEAPTTCSIPIDYNLYR 2 Oxidation (M) 4118.6939 0.69394904 2462 Q96FV9;Q96FV9-2 THOC1 THO complex subunit 1 yes no 0 0 2 1 By MS/MS 1 0 1 1 53.471 53.471 4 0.0012687 15468 20211116_3428_TMUAki_TMT10x_P_F1 47.534 46.007 571520 1210300 26365 957730 1570600 3159400 1470600 2942300 2380100 1652800 1379000 532340 1128400 85947 1027800 1505000 3077900 1525100 2963900 2346100 1667300 1361200 1 1 1 1 1 1 1 1 1 1 1 571520 1210300 26365 957730 1570600 3159400 1470600 2942300 2380100 1652800 1379000 532340 1128400 85947 1027800 1505000 3077900 1525100 2963900 2346100 1667300 1361200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 400520000 400520000 0 8281 2462 7720 44142 53315 53315 2761;2762 1 HTFSGVASVESSSGEAFHVGK Unmodified 2118.997 0.99704647 41 CON__P12763 yes yes 0 0 0 0 By MS/MS By MS/MS 5.84 1.18 3 4 7 3 2 12 7 45.3 45.473 3;4;5 4.5723E-68 11856 20211116_3434_TMUAki_TMT10x_P_F6 249.47 219.78 + 44101000 76632000 429170 84121000 84461000 129620000 51408000 75375000 108220000 79727000 71110000 41062000 71534000 4119900 85969000 80158000 128020000 55632000 79504000 106290000 77687000 69746000 26 26 11 26 26 26 26 26 26 26 26 28041000 45748000 314660 51221000 67058000 115830000 39147000 46632000 68206000 49121000 42481000 26110000 42708000 2888000 52833000 63597000 112460000 42068000 50979000 67204000 47872000 41776000 16 16 5 16 16 16 16 16 16 16 16 16059000 30884000 114510 32900000 17403000 13787000 12261000 28743000 40011000 30606000 28629000 14953000 28825000 1231900 33135000 16560000 15561000 13565000 28524000 39086000 29815000 27970000 10 10 6 10 10 10 10 10 10 10 10 17940000000 12334000000 5606000000 8282 41 7721 44143;44144;44145;44146;44147;44148;44149;44150;44151;44152;44153;44154;44155;44156;44157;44158;44159;44160;44161 53316;53317;53318;53319;53320;53321;53322;53323;53324;53325;53326;53327;53328;53329;53330;53331;53332;53333;53334;53335;53336;53337;53338;53339;53340;53341 53326 26 HTGCCGDNDPIDVCEIGSK Unmodified 2132.8561 0.85613759 1777 Q15181 PPA1 Inorganic pyrophosphatase yes yes 0 0 0 0 By MS/MS By MS/MS 3.14 0.639 1 4 2 4 3 43.962 43.924 3;4 9.8996E-31 14681 20211116_3441_TMUAki_TMT10x_S_F3 166.36 157.41 3993400 6273800 27409 11418000 14735000 12738000 6873700 4814100 6200000 4021500 6740000 3718400 5873400 496560 11305000 13932000 12717000 7362500 5270800 6356100 3960200 6485100 4 4 3 4 4 4 4 4 4 4 4 3993400 6273800 27409 11418000 14735000 12738000 6873700 4814100 6200000 4021500 6740000 3718400 5873400 496560 11305000 13932000 12717000 7362500 5270800 6356100 3960200 6485100 4 4 3 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1417800000 1161800000 255930000 8283 1777 7722 44162;44163;44164;44165;44166;44167;44168 53342;53343;53344;53345;53346;53347;53348 53347 7 HTGPGILSMANAGPNTNGSQFFICTAK Oxidation (M) 2806.3167 0.31668283 1385 P62937;P62937-2 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 0 0 1 0 By MS/MS By MS/MS 2.62 1.5 7 8 8 4 1 1 15 14 57.872 57.696 2;3;4;5 5.3729E-42 18569 20211116_3442_TMUAki_TMT10x_S_F4 185.34 177.05 148260000 253740000 968760 220660000 173290000 263430000 178080000 202590000 212990000 198760000 207260000 138040000 236640000 10078000 228080000 166280000 264360000 181460000 208940000 214950000 194280000 200110000 41 41 22 41 41 41 41 41 41 41 41 68667000 113770000 481730 98094000 71529000 157960000 82424000 87484000 93448000 84278000 92396000 63934000 106100000 5508400 102070000 68845000 155650000 83377000 92409000 94548000 82442000 89164000 20 20 10 20 20 20 20 20 20 20 20 79592000 139970000 487040 122560000 101760000 105470000 95654000 115110000 119550000 114480000 114860000 74110000 130550000 4569800 126010000 97434000 108720000 98084000 116530000 120410000 111840000 110950000 21 21 12 21 21 21 21 21 21 21 21 98569000000 54930000000 43639000000 8284 1385 7723 44169;44170;44171;44172;44173;44174;44175;44176;44177;44178;44179;44180;44181;44182;44183;44184;44185;44186;44187;44188;44189;44190;44191;44192;44193;44194;44195;44196;44197 53349;53350;53351;53352;53353;53354;53355;53356;53357;53358;53359;53360;53361;53362;53363;53364;53365;53366;53367;53368;53369;53370;53371;53372;53373;53374;53375;53376;53377;53378;53379;53380;53381;53382;53383;53384;53385;53386;53387;53388 53384 1860 40 HTGPGILSMANAGPNTNGSQFFICTAK Unmodified 2790.3218 0.3217682 1385 P62937;P62937-2 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 3.47 1.2 4 4 4 2 1 8 7 66.436 66.235 3;4 3.875E-52 22705 20211116_3430_TMUAki_TMT10x_P_F3 209.45 196.39 105310000 173290000 774330 162810000 109450000 112220000 118650000 50622000 36520000 57084000 102720000 98047000 161660000 7387400 166080000 105120000 116060000 117330000 54771000 43096000 55485000 97042000 18 18 8 18 18 18 18 18 18 18 18 50316000 78067000 300320 74444000 48161000 70440000 57915000 26594000 21632000 31273000 48139000 46844000 72831000 2916200 76142000 46383000 71021000 57113000 29392000 24535000 30350000 45618000 9 9 3 9 9 9 9 9 9 9 9 54993000 95228000 474010 88370000 61284000 41782000 60738000 24028000 14888000 25811000 54582000 51203000 88832000 4471200 89940000 58737000 45039000 60218000 25380000 18561000 25135000 51424000 9 9 5 9 9 9 9 9 9 9 9 58098000000 29984000000 28114000000 8285 1385 7723 44198;44199;44200;44201;44202;44203;44204;44205;44206;44207;44208;44209;44210;44211;44212 53389;53390;53391;53392;53393;53394;53395;53396;53397;53398;53399;53400;53401;53402;53403;53404;53405;53406;53407;53408 53391 20 HTGPITCLQFNPK Unmodified 1511.7555 0.75548298 2026 Q6UXN9 WDR82 WD repeat-containing protein 82 yes yes 0 0 0 0 By MS/MS By MS/MS 2.8 2.64 2 2 1 3 2 46.441 46.297 3 3.3647E-06 14566 20211116_3439_TMUAki_TMT10x_S_F1 105.25 81.647 11183000 18297000 136220 20958000 19577000 20851000 13743000 16056000 15204000 14239000 16498000 10413000 17083000 1171600 21191000 18633000 21141000 14291000 16513000 15449000 13982000 15875000 7 7 7 7 7 7 7 7 7 7 7 7345400 11643000 106170 13755000 16276000 17884000 10753000 10283000 9919400 9377300 10830000 6840000 10872000 833010 13945000 15474000 17793000 11170000 10812000 10160000 9195700 10419000 4 4 4 4 4 4 4 4 4 4 4 3837500 6654300 30046 7202500 3300500 2967700 2990100 5773000 5284200 4861800 5668600 3573300 6211200 338630 7245700 3158700 3347500 3120300 5700800 5289000 4785900 5456400 3 3 3 3 3 3 3 3 3 3 3 1054900000 638510000 416360000 8286 2026 7724 44213;44214;44215;44216;44217 53409;53410;53411;53412;53413;53414;53415;53416 53414 8 HTGPNSPDTANDGFVR Unmodified 1683.7601 0.76011066 894;1247 P31943;P55795 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 no no 0 0 0 0 By MS/MS By MS/MS 2.75 1.39 2 2 1 2 1 6 2 30.382 30.301 2;3 6.0664E-69 6544 20211116_3431_TMUAki_TMT10x_P_F4 297.88 266.39 3660100 5580000 3274.4 8038700 13646000 12401000 6064300 6966600 7815600 5014500 6058100 3407400 5215900 277530 8092300 12890000 12242000 6601900 7299000 7812100 4977800 5898400 9 9 3 9 9 9 9 9 9 9 9 3401900 5111200 1328.2 7411400 13386000 12151000 5809800 6526700 7320900 4651600 5575700 3167000 4777900 256470 7469300 12640000 11960000 6336100 6863600 7319700 4620300 5432700 6 6 1 6 6 6 6 6 6 6 6 258160 468800 1946.2 627250 259890 250560 254470 439990 494770 362830 482370 240390 438040 21064 623080 249170 282750 265850 435490 492390 357540 465710 3 3 2 3 3 3 3 3 3 3 3 1293400000 1235600000 57814000 8287 894;1247 7725 44218;44219;44220;44221;44222;44223;44224;44225 53417;53418;53419;53420;53421;53422;53423;53424;53425 53421 9 HTGYVIELQHVVK Unmodified 1521.8304 0.83036248 1065 P47897;P47897-2 QARS Glutamine--tRNA ligase yes no 0 0 0 0 By MS/MS By MS/MS 5.6 1.85 1 2 2 2 3 43.44 43.693 4 2.3855E-09 10889 20211116_3434_TMUAki_TMT10x_P_F6 131.69 103.72 5790000 9384600 41700 10557000 11509000 12844000 7454900 8717900 7823400 6888600 8354900 5391300 8761300 587560 10722000 10935000 12851000 7785200 9017200 7961700 6803100 8043200 5 5 4 5 5 5 5 5 5 5 5 4704100 7610400 19257 8446400 10533000 11823000 6457500 7167400 6491000 5591100 6702800 4380000 7104400 478150 8608100 9997100 11732000 6764200 7475100 6609500 5525500 6459400 3 3 2 3 3 3 3 3 3 3 3 1085900 1774200 22443 2111000 976460 1020800 997430 1550500 1332500 1297500 1652100 1011300 1656800 109420 2113500 938160 1119100 1021000 1542100 1352200 1277600 1583800 2 2 2 2 2 2 2 2 2 2 2 1540800000 1187400000 353440000 8288 1065 7726 44226;44227;44228;44229;44230 53426;53427;53428;53429;53430 53426 5 HTHVQDGEAGGITQQIGATNVPLEAINEQTK Unmodified 3255.612 0.61199645 295 O60841 EIF5B Eukaryotic translation initiation factor 5B yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 1.12 1 1 1 1 1 3 53.385 53.374 4 1.187E-45 14915 20211116_3444_TMUAki_TMT10x_S_F5 189.66 182.39 6481600 11903000 3503 11443000 7812000 9354700 6887100 10590000 10062000 9401100 9778800 6034500 11105000 496850 11675000 7463400 9686500 7132500 10669000 10087000 9230500 9442000 5 5 1 5 5 5 5 5 5 5 5 1311800 2463600 0 2215900 2056600 3512200 2212700 2302500 2085600 2032200 2110300 1221300 2297900 101960 2297400 1974800 3470900 2232300 2394000 2128100 1995900 2034900 2 2 0 2 2 2 2 2 2 2 2 5169800 9439600 3503 9226900 5755400 5842500 4674400 8287300 7976400 7368800 7668500 4813300 8807400 394890 9377400 5488600 6215700 4900200 8275100 7959200 7234600 7407100 3 3 1 3 3 3 3 3 3 3 3 3175200000 573940000 2601300000 8289 295 7727 44231;44232;44233;44234 53431;53432;53433;53434;53435 53435 5 HTLADNFNPVSEER Unmodified 1627.759 0.75904803 746 P20645 M6PR Cation-dependent mannose-6-phosphate receptor yes yes 0 0 0 0 By MS/MS By MS/MS 3 1.22 1 2 2 2 1 5 3 38.309 38.281 3 2.8991E-24 10506 20211116_3442_TMUAki_TMT10x_S_F4 196.42 182.13 10455000 16345000 222230 20693000 24824000 21760000 13253000 13683000 15287000 11043000 16483000 9736500 15268000 1047400 20819000 23524000 21921000 14111000 14241000 15506000 10894000 15863000 10 10 6 10 10 10 10 10 10 10 10 7529000 11295000 160100 15265000 22404000 19492000 10990000 10304000 11528000 8011400 11813000 7011300 10554000 756310 15356000 21204000 19390000 11761000 10871000 11714000 7918800 11387000 5 5 3 5 5 5 5 5 5 5 5 2926300 5050400 62132 5427500 2420200 2268700 2263500 3379500 3759300 3031600 4669800 2725100 4714000 291060 5463100 2320300 2531000 2350500 3369600 3791300 2975200 4476600 5 5 3 5 5 5 5 5 5 5 5 1713100000 1350900000 362140000 8290 746 7728 44235;44236;44237;44238;44239;44240;44241;44242 53436;53437;53438;53439;53440;53441;53442;53443;53444;53445 53444 10 HTLNQIDSVK Unmodified 1153.6091 0.60913632 41 CON__P12763 yes yes 0 0 0 0 By MS/MS By MS/MS 4.8 0.4 1 4 3 2 34.428 34.485 2;3 1.4746E-11 8561 20211116_3433_TMUAki_TMT10x_P_F5 215.96 155.28 + 5186600 9139600 37541 7987300 13679000 13159000 7769600 7503300 11094000 6708400 8626900 4829100 8524000 535540 8307100 12967000 12960000 8293000 7890500 11053000 6584600 8398400 4 4 1 4 4 4 4 4 4 4 4 4096000 7141000 37541 6206100 12356000 12277000 6524400 6305200 9813500 5694600 7204000 3813800 6659800 464350 6488100 11702000 11998000 7024700 6693800 9747100 5586800 7030300 3 3 1 3 3 3 3 3 3 3 3 1090600 1998700 0 1781100 1323300 882710 1245200 1198200 1280500 1013800 1422900 1015300 1864100 71188 1819000 1265400 961750 1268300 1196800 1306200 997720 1368200 1 1 0 1 1 1 1 1 1 1 1 1622800000 1391100000 231670000 8291 41 7729 44243;44244;44245;44246;44247 53446;53447;53448;53449 53447 4 HTLVEADIGIQAER Unmodified 1550.8053 0.80526994 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 42.481 42.536 3 0.00012224 12869 20211116_3430_TMUAki_TMT10x_P_F3 85.006 74.219 989800 1399200 5110.4 1577200 1911900 1862300 1035500 1050200 997600 980280 1235400 921640 1306300 99738 1600700 1811500 1861300 1095000 1106600 1025000 960270 1184400 1 1 1 1 1 1 1 1 1 1 1 989800 1399200 5110.4 1577200 1911900 1862300 1035500 1050200 997600 980280 1235400 921640 1306300 99738 1600700 1811500 1861300 1095000 1106600 1025000 960270 1184400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 61197000 61197000 0 8292 1475 7730 44248 53450 53450 1 HTMMFSATFPK 2 Oxidation (M) 1328.5893 0.58932885 104 O00571;O00571-2;O15523;O15523-2 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 2 0 By MS/MS By MS/MS 4.14 3.09 2 2 1 2 4 3 39.109 39.272 3 1.1882E-05 9597 20211116_3436_TMUAki_TMT10x_P_F8 106.16 87.997 4998500 8146600 96096 8784300 9856700 10585000 6076400 9105500 9850200 7220000 8123400 4654800 7604100 569520 8943300 9361700 10639000 6478000 9276100 9794500 7129100 7889800 9 9 7 9 9 9 9 9 9 9 9 3194400 5068600 53109 5384700 8055100 8974300 4533000 5589300 6201300 4539300 5025300 2974700 4730800 380220 5524600 7638200 8844900 4833900 5822200 6194100 4476600 4884200 5 5 4 5 5 5 5 5 5 5 5 1804100 3078000 42987 3399600 1801600 1610800 1543400 3516300 3648900 2680600 3098000 1680100 2873300 189300 3418700 1723500 1794100 1644200 3453900 3600500 2652500 3005600 4 4 3 4 4 4 4 4 4 4 4 638830000 439140000 199690000 8293 104 7731 44249;44250;44251;44252;44253;44254;44255 53451;53452;53453;53454;53455;53456;53457;53458;53459;53460 53455 81;82 10 HTMMFSATFPK Oxidation (M) 1312.5944 0.59441423 104 O00571;O00571-2;O15523;O15523-2 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 1 0 By MS/MS By MS/MS 2 0 2 1 1 46.225 45.933 3 0.00025035 13960 20211116_3429_TMUAki_TMT10x_P_F2 84.507 68.968 5086700 7565900 61786 8720600 10124000 10117000 7173000 4634400 4478600 4397300 6764300 4736600 7064100 542970 8835800 9636400 10097000 7346800 4981500 4755200 4304400 6454500 2 2 1 2 2 2 2 2 2 2 2 5086700 7565900 61786 8720600 10124000 10117000 7173000 4634400 4478600 4397300 6764300 4736600 7064100 542970 8835800 9636400 10097000 7346800 4981500 4755200 4304400 6454500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 224810000 224810000 0 8294 104 7731 44256;44257 53461;53462;53463 53461 81;82 3 HTNFVEFR Unmodified 1048.509 0.50902834 1209 P53680 AP2S1 AP-2 complex subunit sigma yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 34.405 34.47 3 0.0032291 7232 20211116_3444_TMUAki_TMT10x_S_F5 85.862 69.086 1075700 1622000 37868 1753900 1699800 1596200 1235200 1087500 998650 971910 1339700 1001900 1514000 133220 1777600 1620400 1624400 1269900 1127900 1038400 953980 1281800 2 2 2 2 2 2 2 2 2 2 2 742840 1076600 25836 1195300 1352200 1300700 876850 754060 662610 628590 876530 691850 1005000 94200 1212600 1286200 1306300 907650 790510 691060 619080 838930 1 1 1 1 1 1 1 1 1 1 1 332900 545470 12032 558560 347550 295440 358340 333440 336040 343320 463220 310060 509030 39019 564960 334240 318060 362220 337400 347350 334900 442910 1 1 1 1 1 1 1 1 1 1 1 59774000 45912000 13861000 8295 1209 7732 44258;44259 53464;53465 53465 2 HTPLVEFEEEESDKRESE Unmodified 2188.976 0.97603626 2544 Q96RQ3 MCCC1 Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial yes yes 0 0 0 2 By MS/MS By MS/MS 1 0 2 1 1 45.122 45.011 3;4 6.1611E-63 14071 20211116_3439_TMUAki_TMT10x_S_F1 261.98 243.69 3264800 5689500 37785 6220600 5104900 6515600 3997100 4747000 4728800 3889000 4804400 3039900 5310900 311340 6313000 4868000 6579700 4135000 4890000 4781400 3833500 4632300 3 3 2 3 3 3 3 3 3 3 3 2659400 4583800 23924 4889400 4620900 6019300 3573600 3854400 3788600 3156000 3813900 2476200 4278300 249930 4983300 4404600 6013700 3686200 4007200 3845800 3111100 3678400 2 2 1 2 2 2 2 2 2 2 2 605390 1105700 13861 1331200 483990 496330 423550 892580 940180 733030 990530 563780 1032600 61409 1329600 463400 566030 448780 882740 935650 722490 953970 1 1 1 1 1 1 1 1 1 1 1 441270000 374960000 66308000 8296 2544 7733 44260;44261 53466;53467;53468 53468 3 HTQENCETWGVNGETGTLVDMK Oxidation (M) 2521.085 0.084951556 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 1 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 46.763 46.856 3;4 3.185E-08 14735 20211116_3430_TMUAki_TMT10x_P_F3 100.19 90.43 3053000 5520300 48169 6766400 4835700 4491000 3956500 2133300 2626800 2268000 4036200 2842900 5155700 308200 6780800 4616500 4662500 4018000 2292000 2780500 2209500 3849900 5 5 3 5 5 5 5 5 5 5 5 1684800 2983000 48169 3668300 3996400 3845400 3067700 1249600 1517800 1343900 2240800 1569100 2786000 216950 3696500 3811500 3848200 3112300 1404400 1637600 1308700 2139200 3 3 3 3 3 3 3 3 3 3 3 1368200 2537400 0 3098200 839300 645650 888760 883690 1108900 924080 1795400 1273800 2369700 91247 3084400 805040 814380 905740 887670 1142900 900840 1710700 2 2 0 2 2 2 2 2 2 2 2 628310000 357350000 270960000 8297 1094 7734 44262;44263;44264;44265 53469;53470;53471;53472;53473 53470 1443 5 HTQENCETWGVNGETGTLVDMK Unmodified 2505.09 0.090036934 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 53.586 53.477 3 1.6827E-19 15798 20211116_3431_TMUAki_TMT10x_P_F4 142.53 133.88 5304400 8264000 9201.8 11182000 7614200 6451100 7594200 2898100 2637500 2801800 5717700 4938600 7722100 441580 11130000 7298300 6783900 7550700 3123000 3009400 2740300 5420300 3 3 1 3 3 3 3 3 3 3 3 4232500 6404500 9201.8 8743700 6833500 5940100 6745600 2348300 2171600 2264500 4508400 3940700 5984800 364060 8712900 6548600 6143600 6705400 2566300 2492300 2215100 4276700 2 2 1 2 2 2 2 2 2 2 2 1071900 1859600 0 2437800 780610 510960 848620 549820 465940 537270 1209400 997960 1737300 77520 2417300 749720 640260 845390 556690 517140 525240 1143600 1 1 0 1 1 1 1 1 1 1 1 587470000 468160000 119320000 8298 1094 7734 44266;44267 53474;53475;53476 53474 3 HTQIRPTMFPPKDPEK Unmodified 1920.988 0.98800211 1552 Q08J23;Q08J23-2;Q08J23-3 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 0 0 0 2 By MS/MS By matching 1 0 2 1 1 37.203 37.16 5 0.00083264 8639 20211116_3428_TMUAki_TMT10x_P_F1 68.82 57.206 415130 665620 25502 846550 1105000 817070 601920 365710 329910 341230 545550 386720 621770 67846 850400 1048400 824060 628440 393870 355190 334270 519600 1 1 1 1 1 1 1 1 1 1 1 415130 665620 25502 846550 1105000 817070 601920 365710 329910 341230 545550 386720 621770 67846 850400 1048400 824060 628440 393870 355190 334270 519600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 110230000 87181000 23047000 8299 1552 7735 44268;44269 53477 53477 1 HTQLEQMFR Oxidation (M) 1204.5659 0.56589129 3267 Q9Y3A5 SBDS Ribosome maturation protein SBDS yes yes 0 0 1 0 By MS/MS 5.5 1.5 1 1 2 30.652 30.995 3 0.032829 6579 20211116_3431_TMUAki_TMT10x_P_F4 57.108 32.772 41000 52751 3640 67851 61740 87613 54653 72269 43327 45820 52797 38202 49278 7082 68448 59241 87691 55457 73461 44909 45840 50639 1 1 1 1 1 1 1 1 1 1 1 41000 52751 3640 67851 61740 87613 54653 72269 43327 45820 52797 38202 49278 7082 68448 59241 87691 55457 73461 44909 45840 50639 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 785530 785530 0 8300 3267 7736 44270;44271 53478;53479 53478 3241 2 HTQLEQMFR Unmodified 1188.571 0.57097667 3267 Q9Y3A5 SBDS Ribosome maturation protein SBDS yes yes 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 37.368 37.567 3 0.00016768 8651 20211116_3434_TMUAki_TMT10x_P_F6 121.93 96.308 1342400 2090300 0 2237200 2123800 1869800 1585700 1108600 1250800 1203300 1637800 1249700 1951000 95235 2266400 2021100 1910400 1626200 1168400 1300900 1171400 1568000 4 4 0 4 4 4 4 4 4 4 4 963990 1452200 0 1556600 1761800 1556600 1157200 825630 949650 853300 1164400 897410 1355400 70455 1580600 1672800 1569300 1199000 877160 982810 832240 1116600 2 2 0 2 2 2 2 2 2 2 2 378410 638090 0 680560 361980 313250 428480 282980 301170 350050 473470 352280 595560 24780 685790 348340 341090 427210 291250 318080 339110 451400 2 2 0 2 2 2 2 2 2 2 2 69821000 65447000 4373700 8301 3267 7736 44272;44273;44274 53480;53481;53482;53483 53480 4 HTSTEHTSSSR Unmodified 1228.5432 0.5432416 610 P10643 C7 Complement component C7 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 32.9 32.905 2 0.0025217 9090 20211116_3439_TMUAki_TMT10x_S_F1 78.77 33.09 236780 388910 1938.8 495860 292170 266480 218320 318050 365940 259790 358490 220480 363300 22000 494880 278390 286780 229880 319020 365560 256130 346060 3 3 2 3 3 3 3 3 3 3 3 65387 96789 802.97 103270 136600 137370 80043 61699 102850 63942 76995 60887 90339 7166.7 105400 129600 136140 84855 66617 102720 62357 75074 1 1 1 1 1 1 1 1 1 1 1 171390 292130 1135.8 392600 155570 129110 138280 256350 263090 195850 281500 159590 272960 14833 389480 148790 150640 145030 252400 262840 193770 270980 2 2 1 2 2 2 2 2 2 2 2 51568000 27325000 24244000 8302 610 7737 44275;44276 53484;53485;53486 53485 3 HTVDDGLDIR Unmodified 1139.5571 0.55710075 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 33.517 33.517 3 2.4038E-17 8886 20211116_3429_TMUAki_TMT10x_P_F2 211.64 182.91 327920 495810 4968.1 526120 698480 666700 412640 354180 350360 293430 443530 305360 462760 37007 536690 662850 663500 431570 374060 362470 289080 424980 1 1 1 1 1 1 1 1 1 1 1 327920 495810 4968.1 526120 698480 666700 412640 354180 350360 293430 443530 305360 462760 37007 536690 662850 663500 431570 374060 362470 289080 424980 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17363000 17363000 0 8303 2116 7738 44277;44278;44279 53487;53488;53489 53488 3 HTVDDGLDIRK Unmodified 1267.6521 0.65206377 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 33.888 33.873 4 0.0029546 7955 20211116_3431_TMUAki_TMT10x_P_F4 68.515 44.792 1386500 2146800 0 2351700 3153500 2346000 1647700 1188700 1023400 980480 1539900 1290900 2004000 128520 2384600 2985200 2364300 1730700 1260700 1086800 966160 1469500 1 1 0 1 1 1 1 1 1 1 1 1386500 2146800 0 2351700 3153500 2346000 1647700 1188700 1023400 980480 1539900 1290900 2004000 128520 2384600 2985200 2364300 1730700 1260700 1086800 966160 1469500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 83200000 83200000 0 8304 2116 7739 44280;44281 53490 53490 1 HTVKFEEQGDFESEK Unmodified 1808.8217 0.82170787 2737 Q9BZF1;Q9BZF1-3;Q9BZF1-2 OSBPL8 Oxysterol-binding protein-related protein 8 yes no 0 0 0 1 By matching By MS/MS 3.75 0.829 2 1 1 1 3 38.09 38.109 4 2.1513E-09 10049 20211116_3442_TMUAki_TMT10x_S_F4 124.92 106.78 482250 791180 911.23 867690 533350 391030 501900 430250 439560 420960 627720 449030 738540 40620 872660 510600 428640 508810 435190 456580 411520 599710 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482250 791180 911.23 867690 533350 391030 501900 430250 439560 420960 627720 449030 738540 40620 872660 510600 428640 508810 435190 456580 411520 599710 2 2 1 2 2 2 2 2 2 2 2 142130000 13016000 129120000 8305 2737 7740 44282;44283;44284;44285 53491;53492 53492 2 HTVVVYCDRDTQLAR Unmodified 1831.8999 0.89991538 2307 Q8WVC6 DCAKD Dephospho-CoA kinase domain-containing protein yes yes 0 0 0 1 By MS/MS 5 0 1 1 32.004 31.944 4 1.6941E-06 7461 20211116_3433_TMUAki_TMT10x_P_F5 109.1 88.519 641160 1019900 30245 906140 1009400 1115000 717330 568480 542220 586480 775190 597200 951300 86501 935570 962330 1110700 737470 606110 567550 572040 740590 1 1 1 1 1 1 1 1 1 1 1 641160 1019900 30245 906140 1009400 1115000 717330 568480 542220 586480 775190 597200 951300 86501 935570 962330 1110700 737470 606110 567550 572040 740590 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 51113000 51113000 0 8306 2307 7741 44286 53493 53493 1 HTVYPKPEEWPK Unmodified 1509.7616 0.76161421 731 P19387 POLR2C DNA-directed RNA polymerase II subunit RPB3 yes yes 0 0 0 1 By MS/MS 7 0 1 1 39.525 39.966 4 7.9624E-05 11336 20211116_3435_TMUAki_TMT10x_P_F7 98.337 85.777 516690 867730 0 1060600 1339500 1111900 797550 587080 568380 425410 745880 481060 810400 49952 1069100 1270500 1117700 830240 618550 594560 422140 714030 1 1 0 1 1 1 1 1 1 1 1 516690 867730 0 1060600 1339500 1111900 797550 587080 568380 425410 745880 481060 810400 49952 1069100 1270500 1117700 830240 618550 594560 422140 714030 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 89677000 89677000 0 8307 731 7742 44287 53494 53494 1 HTWMEDADSCVAHNALECAR Oxidation (M) 2387.9681 0.96814766 395 O94906;O94906-2 PRPF6 Pre-mRNA-processing factor 6 yes no 0 0 1 0 By matching By MS/MS 2 0 2 1 1 39.757 39.67 4 1.4399E-06 9973 20211116_3440_TMUAki_TMT10x_S_F2 84.107 80.155 180180 312640 20377 396910 176130 190190 148630 311330 295630 240330 338120 167910 292040 33871 395870 169420 209230 156750 308300 295830 237640 324860 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 180180 312640 20377 396910 176130 190190 148630 311330 295630 240330 338120 167910 292040 33871 395870 169420 209230 156750 308300 295830 237640 324860 1 1 1 1 1 1 1 1 1 1 1 73042000 56201000 16841000 8308 395 7743 44288;44289 53495 53495 302 1 HTYLPLEVCNIVAGQR Unmodified 1868.9567 0.95670198 2842 Q9UKV8;Q9H9G7;Q9UL18;Q9HCK5;Q9H9G7-2;Q9UKV8-2 AGO2;AGO3;AGO1;AGO4 Protein argonaute-2;Protein argonaute-3;Protein argonaute-1;Protein argonaute-4 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 59.433 59.517 3 1.1563E-11 17456 20211116_3447_TMUAki_TMT10x_S_F8 139.64 118.41 8723200 15244000 30628 13088000 14176000 19130000 10708000 24315000 18081000 17991000 15471000 8122300 14216000 816700 13594000 13507000 19232000 11272000 24271000 17979000 17832000 15005000 2 2 1 2 2 2 2 2 2 2 2 4267100 7875000 30628 5716400 8290300 14379000 6992000 16413000 10862000 10571000 8795500 3973300 7340200 438670 6113600 7918400 14159000 7280000 16410000 10808000 10565000 8548700 1 1 1 1 1 1 1 1 1 1 1 4456100 7368900 0 7371400 5886000 4751100 3716400 7902800 7219000 7420500 6675300 4149000 6876000 378030 7480700 5588400 5072600 3991600 7861500 7171500 7267100 6456200 1 1 0 1 1 1 1 1 1 1 1 902270000 564200000 338080000 8309 2842 7744 44290;44291 53496;53497 53497 2 HVAEVLEYTKDEQLESLFQR Unmodified 2433.2176 0.21760393 504 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 0 0 0 1 By MS/MS By MS/MS 5 1.13 1 3 3 3 1 6 5 72.327 72.319 3;4 4.8002E-51 24027 20211116_3442_TMUAki_TMT10x_S_F4 224.19 196.28 55752000 102800000 820260 95265000 67570000 96773000 72977000 67593000 71126000 73659000 76025000 51916000 95896000 4876700 97741000 64969000 97838000 73684000 70378000 72613000 71689000 73187000 12 12 8 12 12 12 12 12 12 12 12 33940000 62464000 172820 59357000 37092000 70824000 45404000 39616000 41915000 44500000 46587000 31602000 58274000 2343500 60944000 35779000 70742000 45513000 42000000 42960000 43260000 44796000 6 6 2 6 6 6 6 6 6 6 6 21812000 40336000 647450 35909000 30477000 25950000 27573000 27977000 29210000 29159000 29439000 20314000 37621000 2533100 36796000 29189000 27096000 28171000 28378000 29653000 28430000 28391000 6 6 6 6 6 6 6 6 6 6 6 11372000000 5858300000 5513400000 8310 504 7745 44292;44293;44294;44295;44296;44297;44298;44299;44300;44301;44302 53498;53499;53500;53501;53502;53503;53504;53505;53506;53507;53508;53509;53510 53506 13 HVAQFLIGTAQR Unmodified 1339.7361 0.73606817 257 O60231 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 44.885 44.885 3 3.5539E-12 12601 20211116_3442_TMUAki_TMT10x_S_F4 169.81 144.67 2785700 3977100 47314 4471000 3824000 4152400 2914800 3393200 3465500 3073000 3731200 2594000 3712900 274190 4521500 3645600 4232800 3021200 3478700 3510900 3014400 3591100 4 4 2 4 4 4 4 4 4 4 4 1686000 2318500 20476 2463600 2904300 3164800 2021200 1937400 1949200 1767600 2184400 1570000 2164000 170170 2513500 2763400 3153300 2094100 2026700 1994500 1733300 2099900 2 2 1 2 2 2 2 2 2 2 2 1099700 1658600 26838 2007400 919710 987610 893560 1455700 1516300 1305400 1546800 1024000 1548900 104020 2008000 882200 1079500 927020 1452000 1516400 1281100 1491200 2 2 1 2 2 2 2 2 2 2 2 486720000 253810000 232910000 8311 257 7746 44303;44304;44305;44306 53511;53512;53513;53514 53514 4 HVDLLEVAQETDGFSGSDLK Unmodified 2159.0382 0.038242585 2229 Q8NBU5 ATAD1 ATPase family AAA domain-containing protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.632 1 3 1 2 3 71.588 71.396 3 4.0367E-18 24314 20211116_3429_TMUAki_TMT10x_P_F2 142.26 131.47 12024000 22002000 142680 20126000 13252000 19453000 14975000 12039000 12912000 13567000 16105000 11196000 20524000 1086000 20654000 12755000 19692000 15036000 12660000 13339000 13187000 15437000 5 5 3 5 5 5 5 5 5 5 5 7452400 13283000 56653 12268000 7242500 13878000 8576000 7461500 7782500 8458700 9969600 6938800 12390000 606690 12611000 6977400 13895000 8604700 7940000 8029700 8220100 9549600 3 3 1 3 3 3 3 3 3 3 3 4571800 8719800 86030 7858700 6009700 5574100 6399500 4577300 5129400 5107800 6135200 4257400 8133200 479350 8043800 5777400 5797100 6431600 4720100 5309600 4966700 5887300 2 2 2 2 2 2 2 2 2 2 2 1632800000 688170000 944630000 8312 2229 7747 44307;44308;44309;44310;44311 53515;53516;53517;53518;53519;53520 53516 6 HVDNIMFENHTVADR Oxidation (M) 1812.8213 0.82133071 2264 Q8TAT6;Q8TAT6-2 NPLOC4 Nuclear protein localization protein 4 homolog yes no 0 0 1 0 By MS/MS By MS/MS 4 0.816 1 1 1 1 2 33.039 33.027 4 0.00034011 10138 20211116_3441_TMUAki_TMT10x_S_F3 78.285 66.672 556840 948450 19340 1083600 1196100 1091200 753180 724720 832940 667000 827380 518620 885510 73144 1096100 1136900 1102900 789620 753610 843680 653810 798320 2 2 2 2 2 2 2 2 2 2 2 397810 702690 18105 815610 1032600 916620 570720 510190 614240 469070 584450 370540 656110 58745 825590 979550 918430 604400 538000 621930 459810 564720 1 1 1 1 1 1 1 1 1 1 1 159030 245750 1235.2 268040 163580 174550 182470 214530 218700 197930 242930 148080 229400 14400 270470 157400 184490 185220 215610 221760 194000 233600 1 1 1 1 1 1 1 1 1 1 1 104800000 66611000 38193000 8313 2264 7748 44312;44313;44314 53521;53522 53522 2647 2 HVDNIMFENHTVADR Unmodified 1796.8264 0.82641609 2264 Q8TAT6;Q8TAT6-2 NPLOC4 Nuclear protein localization protein 4 homolog yes no 0 0 0 0 By MS/MS 4 0 1 1 36.675 36.703 4 4.0292E-06 9079 20211116_3431_TMUAki_TMT10x_P_F4 101.75 92.799 484350 669870 0 767270 1280800 990260 609000 548030 584510 466920 642020 450970 625420 50120 779200 1211100 985120 652100 577090 597750 459360 617550 1 1 0 1 1 1 1 1 1 1 1 484350 669870 0 767270 1280800 990260 609000 548030 584510 466920 642020 450970 625420 50120 779200 1211100 985120 652100 577090 597750 459360 617550 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 96355000 96355000 0 8314 2264 7748 44315 53523 53523 1 HVDYVADQIVTK Unmodified 1386.7143 0.71432967 625 P11388;P11388-2;P11388-3;P11388-4 TOP2A DNA topoisomerase 2-alpha yes no 0 0 0 0 By MS/MS By MS/MS 4.75 0.829 2 1 1 2 2 45.04 45.176 3 0.00023535 12767 20211116_3442_TMUAki_TMT10x_S_F4 82.543 66.319 16544000 26152000 58947 29676000 23796000 20965000 17142000 17955000 20493000 15821000 21235000 15403000 24416000 1377600 29895000 22644000 21827000 17840000 18343000 20728000 15540000 20461000 5 5 2 5 5 5 5 5 5 5 5 5876400 9197300 20213 10600000 14295000 12430000 8011900 6760800 6886700 5930600 7577500 5471100 8587300 549450 10742000 13545000 12423000 8420500 7135100 7079800 5826400 7288400 2 2 1 2 2 2 2 2 2 2 2 10668000 16955000 38733 19076000 9501800 8535100 9130500 11194000 13607000 9890700 13657000 9932300 15829000 828150 19153000 9098800 9405000 9419400 11208000 13648000 9713400 13173000 3 3 1 3 3 3 3 3 3 3 3 2141700000 1182000000 959690000 8315 625 7749 44316;44317;44318;44319 53524;53525;53526;53527;53528 53526 5 HVDYVVDQVVGK Unmodified 1356.7038 0.70376498 1500 Q02880;Q02880-2 TOP2B DNA topoisomerase 2-beta yes no 0 0 0 0 By MS/MS 6 0 1 1 50.586 50.687 3 0.036249 13727 20211116_3434_TMUAki_TMT10x_P_F6 48.659 32.435 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8316 1500 7750 44320 53529 53529 1 HVEAVYIDIADR Unmodified 1399.7096 0.70957864 1465 Q00169 PITPNA Phosphatidylinositol transfer protein alpha isoform yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 4 2 47.234 47.223 3 5.1537E-06 15971 20211116_3441_TMUAki_TMT10x_S_F3 105.65 91.354 5926500 9825800 58934 10822000 9847500 10097000 7205400 9484900 9931700 7779200 9350800 5518300 9172300 562050 10959000 9376900 10317000 7531300 9623500 9963800 7667900 9038400 6 6 3 6 6 6 6 6 6 6 6 3076100 4912500 17998 5436300 6925100 7346900 4527700 4802700 5131400 3984600 4904700 2864200 4585800 309220 5537500 6579900 7309500 4736700 4987000 5185800 3925300 4738400 3 3 1 3 3 3 3 3 3 3 3 2850400 4913300 40936 5385700 2922500 2750200 2677700 4682200 4800300 3794600 4446200 2654100 4586400 252830 5421600 2797000 3007700 2794600 4636500 4778000 3742600 4300000 3 3 2 3 3 3 3 3 3 3 3 736960000 460660000 276310000 8317 1465 7751 44321;44322;44323;44324;44325;44326 53530;53531;53532;53533;53534;53535;53536;53537 53536 8 HVEDGNVTVQHAALSALR Unmodified 1915.9864 0.98642221 1175 P52306;P52306-4;P52306-5;P52306-6;P52306-2;P52306-3 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 38.646 38.707 4 1.3835E-12 9023 20211116_3444_TMUAki_TMT10x_S_F5 137.52 127.52 3416800 5379500 0 5701500 7179100 6667500 4513800 4292100 3961400 3527800 4768100 3180800 5020800 263170 5808200 6811900 6679400 4700800 4460900 4082900 3476900 4574600 5 5 0 5 5 5 5 5 5 5 5 2943600 4516300 0 4781600 6670100 6314700 4018700 3782300 3474400 3079500 4027700 2740200 4215200 226120 4882200 6324400 6281600 4198200 3952300 3578100 3036500 3868200 4 4 0 4 4 4 4 4 4 4 4 473240 863160 0 919940 508940 352710 495080 509830 486990 448330 740390 440610 805630 37048 925990 487480 397840 502650 508590 504780 440400 706380 1 1 0 1 1 1 1 1 1 1 1 244060000 173680000 70374000 8318 1175 7752 44327;44328;44329 53538;53539;53540;53541;53542 53542 5 HVEEFSPR Unmodified 999.47739 0.47739386 1716 Q14566 MCM6 DNA replication licensing factor MCM6 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 29.889 29.626 2;3 0.0001638 8913 20211116_3441_TMUAki_TMT10x_S_F3 149.65 112.96 316370 567800 6040.1 522670 378260 323010 373310 294610 338380 336960 426110 294620 529650 32725 533410 362940 340740 377850 302240 348890 327350 408340 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 316370 567800 6040.1 522670 378260 323010 373310 294610 338380 336960 426110 294620 529650 32725 533410 362940 340740 377850 302240 348890 327350 408340 2 2 2 2 2 2 2 2 2 2 2 68462000 0 68462000 8319 1716 7753 44330;44331;44332;44333 53543;53544;53545;53546 53545 4 HVEFLVAENER Unmodified 1341.6677 0.66771383 2454 Q96F24;Q96F24-2;Q96F24-3 NRBF2 Nuclear receptor-binding factor 2 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 39.459 39.512 3 0.0033915 11650 20211116_3430_TMUAki_TMT10x_P_F3 64.121 47.489 405490 578120 21483 651510 709080 762140 697440 363490 403090 385010 512620 377710 539720 57891 661120 680910 760640 698940 390330 426840 375140 491120 2 2 2 2 2 2 2 2 2 2 2 405490 578120 21483 651510 709080 762140 697440 363490 403090 385010 512620 377710 539720 57891 661120 680910 760640 698940 390330 426840 375140 491120 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10059000 10059000 0 8320 2454 7754 44334;44335;44336 53547;53548;53549;53550 53549 4 HVEPGNAAIR Unmodified 1062.557 0.55704117 1863 Q16775;Q16775-2 HAGH Hydroxyacylglutathione hydrolase, mitochondrial yes no 0 0 0 0 By matching By MS/MS 2.5 0.5 1 1 1 1 27.102 26.841 3 0.0026961 7932 20211116_3441_TMUAki_TMT10x_S_F3 72.607 60.886 85830 148770 0 113020 110600 86803 106480 87646 96024 89375 103370 79884 138680 3408.3 117430 105680 90065 107900 89122 98406 87217 99488 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 85830 148770 0 113020 110600 86803 106480 87646 96024 89375 103370 79884 138680 3408.3 117430 105680 90065 107900 89122 98406 87217 99488 1 1 0 1 1 1 1 1 1 1 1 5555200 686880 4868300 8321 1863 7755 44337;44338 53551 53551 1 HVFAIFNTEQR Unmodified 1360.6888 0.68878362 1140 P50570;P50570-3;P50570-2;P50570-5;P50570-4 DNM2 Dynamin-2 yes no 0 0 0 0 By MS/MS By MS/MS 5 3.46 3 4 4 3 48.83 48.579 3 9.6315E-18 12979 20211116_3447_TMUAki_TMT10x_S_F8 187.97 167.98 745330 1519900 5875.3 1547600 819780 732360 648370 1132900 1210300 1013500 1158300 694020 1418400 68312 1564600 782090 805370 684030 1128000 1204800 994750 1119000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 745330 1519900 5875.3 1547600 819780 732360 648370 1132900 1210300 1013500 1158300 694020 1418400 68312 1564600 782090 805370 684030 1128000 1204800 994750 1119000 1 1 1 1 1 1 1 1 1 1 1 477190000 0 477190000 8322 1140 7756 44339;44340;44341;44342;44343;44344;44345 53552;53553;53554;53555;53556;53557;53558 53557 7 HVFCYDCAILHEK Unmodified 1690.7596 0.75958208 2045 Q75N03;Q75N03-2 CBLL1 E3 ubiquitin-protein ligase Hakai yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 46.26 46.587 4 0.0010652 12401 20211116_3445_TMUAki_TMT10x_S_F6 75.589 67.485 814130 1483700 11657 1657700 862580 715380 783080 1269500 1150000 1096400 1230500 758120 1385100 79039 1664700 825790 799350 809830 1257600 1156800 1077900 1184600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 814130 1483700 11657 1657700 862580 715380 783080 1269500 1150000 1096400 1230500 758120 1385100 79039 1664700 825790 799350 809830 1257600 1156800 1077900 1184600 1 1 1 1 1 1 1 1 1 1 1 306070000 0 306070000 8323 2045 7757 44346;44347 53559 53559 1 HVFGESDELIGQK Unmodified 1457.7151 0.71505795 1271 P60174;P60174-1;P60174-4 TPI1 Triosephosphate isomerase yes no 0 0 0 0 By MS/MS By MS/MS 4.09 1.38 2 2 2 3 2 6 5 46.696 46.713 3 4.7599E-12 16026 20211116_3441_TMUAki_TMT10x_S_F3 153.34 122.34 47048000 78042000 446010 97860000 82981000 89811000 50584000 67575000 71923000 59339000 70070000 43809000 72895000 4683100 98313000 78770000 91490000 53664000 69581000 72170000 58293000 67651000 17 17 12 17 17 17 17 17 17 17 17 25727000 41468000 260720 52562000 65765000 73458000 36737000 36162000 38125000 31081000 36528000 23956000 38736000 2849100 53151000 62339000 72707000 38825000 38497000 38669000 30564000 35286000 9 9 6 9 9 9 9 9 9 9 9 21321000 36574000 185290 45297000 17216000 16353000 13847000 31413000 33798000 28258000 33542000 19853000 34160000 1834000 45162000 16431000 18783000 14840000 31084000 33501000 27728000 32365000 8 8 6 8 8 8 8 8 8 8 8 8084300000 5115700000 2968700000 8324 1271 7758 44348;44349;44350;44351;44352;44353;44354;44355;44356;44357;44358 53560;53561;53562;53563;53564;53565;53566;53567;53568;53569;53570;53571;53572;53573;53574;53575;53576 53570 17 HVFGQAVK Unmodified 884.48684 0.48683634 3174 Q9ULV4;Q9ULV4-2;Q9ULV4-3 CORO1C Coronin-1C yes no 0 0 0 0 By matching By MS/MS 1 0 2 1 1 33.272 33.277 3 0.0045451 9245 20211116_3439_TMUAki_TMT10x_S_F1 80.229 66.557 445850 701940 6442.9 692680 465770 449190 485110 513830 484030 460320 634690 415180 654950 43248 703660 447480 474070 491020 517560 497810 451780 607600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 445850 701940 6442.9 692680 465770 449190 485110 513830 484030 460320 634690 415180 654950 43248 703660 447480 474070 491020 517560 497810 451780 607600 1 1 1 1 1 1 1 1 1 1 1 27856000 12034000 15822000 8325 3174 7759 44359;44360 53577 53577 1 HVFGQPVK Unmodified 910.50249 0.5024864 2632 Q9BR76 CORO1B Coronin-1B yes yes 0 0 0 0 By MS/MS 1 0 1 1 33.57 33.58 3 0.053063 9378 20211116_3439_TMUAki_TMT10x_S_F1 41.652 25.498 331360 578210 6472.3 578450 344120 332680 412760 396970 390820 359280 446920 308570 539530 33682 586420 332080 355510 414410 399240 400540 352450 429390 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 331360 578210 6472.3 578450 344120 332680 412760 396970 390820 359280 446920 308570 539530 33682 586420 332080 355510 414410 399240 400540 352450 429390 1 1 1 1 1 1 1 1 1 1 1 12170000 0 12170000 8326 2632 7760 44361 53578 53578 1 HVFLTGPPGVGK Unmodified 1207.6713 0.67134264 2649 Q9BSD7 NTPCR Cancer-related nucleoside-triphosphatase yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 45.95 45.788 3 1.583E-07 12542 20211116_3440_TMUAki_TMT10x_S_F2 129.89 105.03 9723100 15526000 125550 17861000 15777000 14846000 9881300 15245000 16493000 13649000 14070000 9053500 14496000 938460 18011000 14983000 15319000 10536000 15433000 16404000 13397000 13648000 6 6 4 6 6 6 6 6 6 6 6 3998900 6158000 29480 6904000 10378000 9767400 4903600 5253600 6345100 4674300 5247800 3723100 5748900 382650 7033300 9810500 9672400 5304800 5551900 6353100 4589000 5096300 2 2 1 2 2 2 2 2 2 2 2 5724100 9368300 96072 10957000 5399200 5079000 4977700 9991800 10148000 8975200 8822400 5330400 8747600 555820 10978000 5172000 5647100 5231200 9880600 10050000 8807500 8551700 4 4 3 4 4 4 4 4 4 4 4 1165400000 638010000 527420000 8327 2649 7761 44362;44363;44364;44365 53579;53580;53581;53582;53583;53584 53581 6 HVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGR Unmodified 3719.8061 0.80608116 468 P00441 SOD1 Superoxide dismutase [Cu-Zn] yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 72.013 71.832 5 1.3481E-17 26100 20211116_3441_TMUAki_TMT10x_S_F3 120.58 113.57 5651200 9035400 31020 9084700 6297100 8819200 6125000 5182600 5224200 6160300 6307200 5261700 8431200 461790 9260400 6032600 8919100 6194000 5482100 5392600 5976100 6050800 4 4 3 4 4 4 4 4 4 4 4 3167600 4943100 28667 4915100 2982500 6031300 3182200 2585500 2761500 3445900 3301000 2949600 4612300 286740 5032900 2866500 5998000 3204400 2828400 2846900 3330000 3167700 2 2 2 2 2 2 2 2 2 2 2 2483600 4092300 2353.5 4169600 3314600 2788000 2942800 2597100 2462700 2714300 3006100 2312100 3818800 175040 4227500 3166100 2921100 2989600 2653700 2545700 2646100 2883100 2 2 1 2 2 2 2 2 2 2 2 5852900000 3208900000 2644000000 8328 468 7762 44366;44367;44368;44369;44370;44371 53585;53586;53587;53588 53588 4 HVGMAVAGLLADAR Oxidation (M) 1395.7293 0.72926823 808 P25788;P25788-2 PSMA3 Proteasome subunit alpha type-3 yes no 0 0 1 0 By MS/MS By MS/MS 7.4 0.49 3 2 2 3 49.028 49.303 2;3 2.3976E-09 15551 20211116_3446_TMUAki_TMT10x_S_F7 126.83 89.135 11858000 19410000 204230 20319000 18228000 21676000 13902000 23335000 21347000 20016000 19083000 11041000 18115000 1158800 20685000 17374000 22036000 14558000 23542000 21311000 19685000 18479000 7 7 5 7 7 7 7 7 7 7 7 5141900 7583100 76858 8195500 11244000 14943000 7711800 8710700 8531700 7867800 7589300 4788200 7078100 583390 8418400 10697000 14667000 8032500 9145800 8610200 7718800 7350300 3 3 3 3 3 3 3 3 3 3 3 6715600 11827000 127370 12124000 6983500 6733200 6190600 14624000 12816000 12148000 11494000 6253000 11037000 575360 12267000 6677100 7369200 6526000 14397000 12701000 11966000 11129000 4 4 2 4 4 4 4 4 4 4 4 1301500000 711670000 589870000 8329 808 7763 44372;44373;44374;44375;44376 53589;53590;53591;53592;53593;53594;53595;53596 53593 959 8 HVGMAVAGLLADAR Unmodified 1379.7344 0.73435361 808 P25788;P25788-2 PSMA3 Proteasome subunit alpha type-3 yes no 0 0 0 0 By MS/MS 8 0 1 1 54.943 55.059 3 0.0011205 16189 20211116_3436_TMUAki_TMT10x_P_F8 69.314 43.401 1835200 2680100 73769 3326000 3291800 4142200 2473300 2734100 2369200 2219200 2716600 1709300 2503300 241300 3359700 3140200 4137800 2548300 2835500 2427100 2188600 2609900 1 1 1 1 1 1 1 1 1 1 1 1835200 2680100 73769 3326000 3291800 4142200 2473300 2734100 2369200 2219200 2716600 1709300 2503300 241300 3359700 3140200 4137800 2548300 2835500 2427100 2188600 2609900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 475220000 475220000 0 8330 808 7763 44377 53597 53597 1 HVGPGVLSMANAGPNTNGSQFFICTIK Oxidation (M) 2832.3687 0.3687184 871 P30405 PPIF Peptidyl-prolyl cis-trans isomerase F, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 3 0 2 1 1 65.776 65.318 3;4 2.952E-15 22387 20211116_3430_TMUAki_TMT10x_P_F3 124.31 115.03 4418100 7463500 74908 7077200 6237800 5722700 5225100 5176700 5568600 5644300 6503100 4114300 6962800 461590 7226900 5960100 5901200 5363700 5304900 5683200 5493300 6244400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4418100 7463500 74908 7077200 6237800 5722700 5225100 5176700 5568600 5644300 6503100 4114300 6962800 461590 7226900 5960100 5901200 5363700 5304900 5683200 5493300 6244400 1 1 1 1 1 1 1 1 1 1 1 1155900000 0 1155900000 8331 871 7764 44378;44379 53598;53599 53598 1046 2 HVGPGVLSMANAGPNTNGSQFFICTIK Unmodified 2816.3738 0.37380378 871 P30405 PPIF Peptidyl-prolyl cis-trans isomerase F, mitochondrial yes yes 0 0 0 0 By MS/MS 4 0 1 1 71.468 71.531 3 4.4059E-09 23233 20211116_3431_TMUAki_TMT10x_P_F4 94.389 80.934 1758400 2739400 0 2868400 1500100 2203200 2034500 1103700 952700 1195800 1644200 1636900 2556600 94709 2907100 1448700 2260800 2002300 1180400 1041100 1164100 1564700 1 1 0 1 1 1 1 1 1 1 1 1758400 2739400 0 2868400 1500100 2203200 2034500 1103700 952700 1195800 1644200 1636900 2556600 94709 2907100 1448700 2260800 2002300 1180400 1041100 1164100 1564700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 450300000 450300000 0 8332 871 7764 44380 53600 53600 1 HVIADQEVMETNRVESVEPSENEASK Oxidation (M) 2942.3564 0.35635861 2796 Q9H307 PNN Pinin yes yes 0 0 1 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 39.018 38.946 4 4.8398E-25 11587 20211116_3439_TMUAki_TMT10x_S_F1 160.15 149.75 2129000 3617100 40862 5090500 2538100 2653600 1564400 2410100 3906500 2502500 3150000 1982600 3380600 220320 5052700 2411700 2848100 1710300 2465500 3844800 2440300 3062100 6 6 6 6 6 6 6 6 6 6 6 750530 1186400 8943.9 1585800 1875200 1883700 1000800 751210 1331100 873150 972390 698890 1108500 86312 1594000 1776600 1875100 1071100 824580 1327000 847740 949140 2 2 2 2 2 2 2 2 2 2 2 1378500 2430700 31918 3504800 662890 769900 563650 1658900 2575400 1629400 2177600 1283700 2272100 134010 3458700 635050 973000 639200 1640900 2517900 1592500 2113000 4 4 4 4 4 4 4 4 4 4 4 469920000 358870000 111050000 8333 2796 7765 44381;44382;44383;44384 53601;53602;53603;53604;53605;53606 53605 2954 6 HVIADQEVMETNRVESVEPSENEASK Unmodified 2926.3614 0.36144399 2796 Q9H307 PNN Pinin yes yes 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 42.814 42.689 4 5.239E-49 11266 20211116_3440_TMUAki_TMT10x_S_F2 201.58 188.31 947620 1540600 0 2348100 1315100 1042600 872030 458360 461660 467610 1077500 882140 1440600 59615 2318900 1248300 1129500 895000 495790 509470 456320 1020300 2 2 0 2 2 2 2 2 2 2 2 529960 858100 0 1286100 1120800 903490 698270 279180 278210 277940 629160 493320 802300 37091 1276100 1063100 929980 717380 315320 313860 271500 596060 1 1 0 1 1 1 1 1 1 1 1 417660 682530 0 1062000 194260 139130 173750 179190 183450 189680 448300 388810 638300 22524 1042800 185170 199560 177620 180480 195610 184820 424260 1 1 0 1 1 1 1 1 1 1 1 318270000 248250000 70018000 8334 2796 7765 44385;44386 53607;53608 53608 2 HVIDFFK Unmodified 904.48069 0.48068833 2949 Q9NTZ6 RBM12 RNA-binding protein 12 yes yes 0 0 0 0 By MS/MS By MS/MS 6 2.92 1 1 2 1 3 53.621 53.632 3 0.0020411 15100 20211116_3447_TMUAki_TMT10x_S_F8 108.24 88.967 12645000 19166000 52758 22356000 20419000 21592000 13999000 13307000 14568000 13674000 16211000 11774000 17896000 1206400 22570000 19421000 21857000 14553000 13959000 14854000 13340000 15587000 3 3 3 3 3 3 3 3 3 3 3 8796400 13094000 25281 15181000 16853000 18420000 10635000 9122200 10026000 9498400 10964000 8190500 12225000 865680 15388000 16005000 18356000 11094000 9755300 10260000 9261200 10548000 2 2 2 2 2 2 2 2 2 2 2 3848800 6072500 27477 7175200 3565900 3172000 3363400 4184800 4541300 4175600 5246600 3583800 5670400 340740 7182200 3415800 3501100 3458700 4203400 4593400 4078500 5039400 1 1 1 1 1 1 1 1 1 1 1 922250000 582470000 339770000 8335 2949 7766 44387;44388;44389;44390 53609;53610;53611;53612;53613 53613 5 HVINFDLPSDIEEYVHR Unmodified 2082.0171 0.017053633 104 O00571;O00571-2;O15523;O15523-2 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 0 0 By MS/MS By MS/MS 4.22 1.78 1 3 3 2 4 3 2 11 7 68.124 68.075 3;4 9.3215E-36 20859 20211116_3444_TMUAki_TMT10x_S_F5 201.16 174.79 45442000 77143000 805930 75219000 51293000 66278000 53763000 49325000 46281000 48183000 57781000 42316000 71976000 4004700 76738000 49280000 67690000 54173000 50972000 47819000 47105000 55383000 23 23 14 23 23 23 23 23 23 23 23 19268000 31802000 429410 30354000 21036000 39609000 22864000 21796000 21157000 20836000 23937000 17943000 29669000 1771600 31206000 20238000 39380000 23044000 23031000 21697000 20389000 23005000 11 11 6 11 11 11 11 11 11 11 11 26175000 45341000 376520 44865000 30257000 26669000 30898000 27529000 25125000 27347000 33844000 24373000 42306000 2233000 45532000 29042000 28310000 31129000 27941000 26122000 26716000 32378000 12 12 8 12 12 12 12 12 12 12 12 24097000000 11862000000 12235000000 8336 104 7767 44391;44392;44393;44394;44395;44396;44397;44398;44399;44400;44401;44402;44403;44404;44405;44406;44407;44408 53614;53615;53616;53617;53618;53619;53620;53621;53622;53623;53624;53625;53626;53627;53628;53629;53630;53631;53632;53633;53634;53635;53636;53637;53638;53639 53633 26 HVIPMNPNTDDLFK Oxidation (M) 1655.7977 0.79774172 658 P13797;P13797-3;P13797-2 PLS3 Plastin-3 yes no 0 0 1 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 49.649 49.805 3 2.3492E-14 14526 20211116_3433_TMUAki_TMT10x_P_F5 154.28 134.54 49878000 78156000 624190 89779000 95140000 88509000 55306000 64716000 70925000 60421000 68453000 46445000 72971000 5270800 90749000 90256000 89711000 58666000 66871000 71383000 59187000 66111000 13 13 8 13 13 13 13 13 13 13 13 32747000 50157000 557210 57835000 78571000 73846000 39844000 41133000 45427000 38539000 43908000 30495000 46831000 3863400 58698000 74397000 73506000 42613000 43394000 45916000 37746000 42403000 8 8 6 8 8 8 8 8 8 8 8 17131000 27999000 66975 31944000 16569000 14663000 15462000 23583000 25498000 21881000 24545000 15951000 26140000 1407400 32051000 15859000 16204000 16053000 23476000 25467000 21441000 23707000 5 5 2 5 5 5 5 5 5 5 5 3211300000 1913600000 1297800000 8337 658 7768 44409;44410;44411;44412;44413 53640;53641;53642;53643;53644;53645;53646;53647;53648;53649;53650;53651;53652 53642 720 13 HVIPMNPNTDDLFK Unmodified 1639.8028 0.8028271 658 P13797;P13797-3;P13797-2 PLS3 Plastin-3 yes no 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 56.434 56.51 3 0.058016 16511 20211116_3445_TMUAki_TMT10x_S_F6 35.891 24.099 14469000 25267000 274610 28254000 20671000 21879000 17124000 15471000 16202000 16073000 18385000 13472000 23588000 1307100 28517000 19732000 22538000 17527000 16071000 16601000 15673000 17668000 2 2 1 2 2 2 2 2 2 2 2 6246900 10275000 0 11506000 12099000 13812000 8922900 6021000 6402600 6873900 7610900 5814600 9592400 364630 11686000 11506000 13753000 9138900 6540500 6666700 6678200 7304600 1 1 0 1 1 1 1 1 1 1 1 8222300 14992000 274610 16748000 8571700 8066800 8201400 9450000 9799600 9199400 10774000 7657900 13995000 942510 16832000 8226300 8784400 8387900 9530800 9934000 8994900 10363000 1 1 1 1 1 1 1 1 1 1 1 1294200000 391820000 902400000 8338 658 7768 44414;44415;44416 53653;53654 53654 2 HVISYSLSPFEQR Unmodified 1561.7889 0.7888916 144 O14949 UQCRQ Cytochrome b-c1 complex subunit 8 yes yes 0 0 0 0 By MS/MS 8 0 1 1 50.336 50.423 3 1.6376E-08 14297 20211116_3436_TMUAki_TMT10x_P_F8 113.07 76.541 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8339 144 7769 44417 53655 53655 1 HVLALTGCGPGR Unmodified 1236.6397 0.63972494 2670 Q9BTY7 HGH1 Protein HGH1 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 34.517 34.506 3 4.1609E-08 9333 20211116_3429_TMUAki_TMT10x_P_F2 115.91 103.48 237670 352400 0 375740 200160 172610 199790 252380 261090 216360 319830 221290 328910 18675 378630 191880 190160 204570 251500 265020 212800 306710 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 237670 352400 0 375740 200160 172610 199790 252380 261090 216360 319830 221290 328910 18675 378630 191880 190160 204570 251500 265020 212800 306710 1 1 0 1 1 1 1 1 1 1 1 32134000 0 32134000 8340 2670 7770 44418;44419 53656;53657 53656 2 HVLDALDPNAYEAFK Unmodified 1701.8362 0.83623572 1129 P49916;P49916-3;P49916-4;P49916-2 LIG3 DNA ligase 3 yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 68.708 68.632 3 0.00029214 23510 20211116_3446_TMUAki_TMT10x_S_F7 70.197 48.324 5956300 8429400 108200 9832400 6108500 6062800 6134400 5877900 4962400 5822800 6703900 5546700 7870800 596790 9875200 5864400 6404700 6184700 5984000 5161500 5689100 6413100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5956300 8429400 108200 9832400 6108500 6062800 6134400 5877900 4962400 5822800 6703900 5546700 7870800 596790 9875200 5864400 6404700 6184700 5984000 5161500 5689100 6413100 1 1 1 1 1 1 1 1 1 1 1 912600000 0 912600000 8341 1129 7771 44420;44421 53658;53659 53659 2 HVLEATYGINIITPR Unmodified 1695.9308 0.93080481 2767 Q9H089 LSG1 Large subunit GTPase 1 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 2 1 1 2 57.935 57.634 3 1.5783E-06 16546 20211116_3447_TMUAki_TMT10x_S_F8 93.51 78.122 2260900 3761000 65025 3906200 2514000 2092100 2239600 3154200 3118600 3183800 3286900 2105600 3510000 251590 3947600 2407600 2267100 2313300 3154200 3140100 3108200 3165600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2260900 3761000 65025 3906200 2514000 2092100 2239600 3154200 3118600 3183800 3286900 2105600 3510000 251590 3947600 2407600 2267100 2313300 3154200 3140100 3108200 3165600 1 1 1 1 1 1 1 1 1 1 1 141050000 0 141050000 8342 2767 7772 44422;44423;44424 53660;53661;53662 53662 3 HVLFGTVGVPEHTYR Unmodified 1710.8842 0.88418897 487 P04216 THY1 Thy-1 membrane glycoprotein yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 41.886 41.929 4 1.1354E-10 10699 20211116_3428_TMUAki_TMT10x_P_F1 139.86 131.99 3482200 5292000 80894 5845800 6034900 5915500 3618800 4380000 4470100 4092200 4780600 3242400 4940100 347560 5925600 5727300 5987500 3823400 4522100 4521300 4008500 4602100 6 6 3 6 6 6 6 6 6 6 6 2405000 3408300 79519 3774300 5025600 4942800 2676300 2820700 2914600 2775300 3132200 2239500 3181700 261990 3842000 4761400 4915600 2844900 2973600 2962400 2712400 3014800 3 3 2 3 3 3 3 3 3 3 3 1077200 1883700 1375.7 2071600 1009400 972750 942460 1559300 1555500 1316900 1648400 1002900 1758400 85577 2083600 965950 1071900 978450 1548500 1558900 1296100 1587200 3 3 1 3 3 3 3 3 3 3 3 956770000 736740000 220030000 8343 487 7773 44425;44426;44427;44428 53663;53664;53665;53666;53667;53668 53663 6 HVLLTIK Unmodified 822.53272 0.5327239 1862 Q16763 UBE2S Ubiquitin-conjugating enzyme E2 S yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 42.411 42.339 3 0.0046746 12527 20211116_3429_TMUAki_TMT10x_P_F2 90.706 21.323 778640 1357700 22221 1219800 851610 698900 737570 705860 661710 554880 929240 725160 1266400 86286 1246400 815040 744280 751770 712800 685990 548140 888120 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 778640 1357700 22221 1219800 851610 698900 737570 705860 661710 554880 929240 725160 1266400 86286 1246400 815040 744280 751770 712800 685990 548140 888120 1 1 1 1 1 1 1 1 1 1 1 51724000 0 51724000 8344 1862 7774 44429;44430;44431 53669;53670 53669 2 HVLTGSADNSCR Unmodified 1315.5939 0.59389696 1623 Q13347 EIF3I Eukaryotic translation initiation factor 3 subunit I yes yes 0 0 0 0 By MS/MS 3 0 1 1 26.588 26.295 3 9.4698E-05 7654 20211116_3441_TMUAki_TMT10x_S_F3 93.839 87.599 127510 52796 0 61848 32906 37897 35246 25050 27795 23929 39034 118660 49298 1725.9 62097 31122 39795 35399 26084 29001 23416 37306 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 127510 52796 0 61848 32906 37897 35246 25050 27795 23929 39034 118660 49298 1725.9 62097 31122 39795 35399 26084 29001 23416 37306 1 1 0 1 1 1 1 1 1 1 1 1614000 0 1614000 8345 1623 7775 44432 53671 53671 1 HVLTTLGEK Unmodified 996.5604 0.56039521 673 P14649 MYL6B Myosin light chain 6B yes yes 0 0 0 0 By MS/MS 6 0 1 1 36.049 36.034 3 0.033017 7926 20211116_3434_TMUAki_TMT10x_P_F6 47.706 33.039 219020 323380 2099.4 331040 346180 361490 238600 182540 185620 194690 246650 203940 301770 21896 337630 329360 362360 246010 194990 193320 189640 236050 1 1 1 1 1 1 1 1 1 1 1 219020 323380 2099.4 331040 346180 361490 238600 182540 185620 194690 246650 203940 301770 21896 337630 329360 362360 246010 194990 193320 189640 236050 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6107800 6107800 0 8346 673 7776 44433 53672 53672 1 HVLVTLGEK Unmodified 994.58113 0.58113065 1275 P60660;P60660-2 MYL6 Myosin light polypeptide 6 yes no 0 0 0 0 By MS/MS By MS/MS 6.7 0.781 5 3 2 5 5 40.786 41.026 2;3 4.5824E-07 10220 20211116_3445_TMUAki_TMT10x_S_F6 179.68 154.75 16117000 25197000 88250 23695000 20088000 22987000 15914000 16793000 15950000 15484000 19080000 15007000 23506000 1380900 24268000 19155000 23322000 16361000 17347000 16336000 15176000 18309000 9 9 4 9 9 9 9 9 9 9 9 10290000 15892000 33422 14144000 13800000 17683000 9907300 10785000 9910500 9549300 11776000 9581300 14823000 895750 14605000 13134000 17641000 10253000 11277000 10148000 9377300 11302000 3 3 1 3 3 3 3 3 3 3 3 5827100 9304300 54828 9551500 6287700 5304100 6006400 6007400 6040000 5934700 7304100 5425500 8682900 485150 9663100 6021600 5681300 6108300 6070300 6188000 5799100 7006900 6 6 3 6 6 6 6 6 6 6 6 3664900000 2442300000 1222700000 8347 1275 7777 44434;44435;44436;44437;44438;44439;44440;44441;44442;44443 53673;53674;53675;53676;53677;53678;53679;53680;53681;53682;53683;53684;53685 53679 13 HVMNPLETLSITNCR Oxidation (M) 1799.8658 0.86583806 1430 P78395 PRAME Melanoma antigen preferentially expressed in tumors yes yes 0 0 1 0 By MS/MS 7 0 1 1 50.472 51.145 3 0.015563 15764 20211116_3435_TMUAki_TMT10x_P_F7 50.079 36.173 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8348 1430 7778 44444 53686 53686 1932 1 HVNPVQALSEFK Unmodified 1367.7197 0.7197494 922 P35221;P35221-2;P35221-3 CTNNA1 Catenin alpha-1 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 56.906 56.962 3 0.00043203 16941 20211116_3436_TMUAki_TMT10x_P_F8 80.69 57.014 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8349 922 7779 44445;44446 53687;53688 53687 2 HVNTNPLCDLTPIFK Unmodified 1767.8978 0.89779012 3162 Q9UKX7;Q9UKX7-2 NUP50 Nuclear pore complex protein Nup50 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 67.473 67.473 3 1.5429E-14 21251 20211116_3436_TMUAki_TMT10x_P_F8 152 128.15 20602000 30977000 396180 35502000 17741000 24347000 20295000 14042000 13634000 15641000 21746000 19186000 28921000 2026800 35732000 17098000 25260000 20246000 14845000 14449000 15210000 20727000 4 4 3 4 4 4 4 4 4 4 4 11499000 17646000 348940 20466000 10448000 16914000 11211000 8011700 7628200 8785000 12635000 10709000 16476000 1263800 20626000 10058000 17250000 11221000 8618200 8094800 8548000 12033000 2 2 2 2 2 2 2 2 2 2 2 9103400 13330000 47242 15036000 7292800 7433300 9083900 6030400 6005400 6856500 9111100 8476400 12445000 762990 15105000 7039900 8010000 9025200 6226900 6354400 6662400 8693000 2 2 1 2 2 2 2 2 2 2 2 1869100000 1092400000 776660000 8350 3162 7780 44447;44448 53689;53690;53691;53692 53690 4 HVPVVYVDYPGPASLTQIYGTFNR Unmodified 2692.3649 0.36493687 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 77.389 77.29 3 1.228E-22 28127 20211116_3441_TMUAki_TMT10x_S_F3 151.22 134.5 10791000 18291000 323280 17208000 13143000 21720000 14925000 12873000 12834000 13289000 14325000 10050000 17063000 1228900 17699000 12666000 21649000 14982000 13547000 13201000 12961000 13773000 3 3 3 3 3 3 3 3 3 3 3 8069900 13613000 298280 12446000 8692400 18436000 10673000 9588500 9517700 10113000 10687000 7516100 12698000 955750 12869000 8402500 18213000 10687000 10211000 9774700 9855100 10273000 2 2 2 2 2 2 2 2 2 2 2 2721500 4677500 25008 4761900 4450600 3283900 4252100 3284600 3316500 3176000 3638200 2534200 4364900 273160 4829800 4264000 3436600 4294500 3336200 3426300 3106300 3499700 1 1 1 1 1 1 1 1 1 1 1 2887300000 986660000 1900600000 8351 1695 7781 44449;44450 53693;53694;53695 53695 3 HVQSLEPDPGTPGSER Unmodified 1704.8067 0.80672651 2999 Q9NX46 ADPRHL2 Poly(ADP-ribose) glycohydrolase ARH3 yes yes 0 0 0 0 By MS/MS 3 0 1 1 32.273 32.028 3 2.5401E-07 9806 20211116_3441_TMUAki_TMT10x_S_F3 102.39 39.229 98828 176880 103.01 194860 112730 94302 112220 102370 132490 98175 164580 92019 165120 8484.3 196020 108090 102450 114490 103550 135040 96055 157770 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 98828 176880 103.01 194860 112730 94302 112220 102370 132490 98175 164580 92019 165120 8484.3 196020 108090 102450 114490 103550 135040 96055 157770 1 1 1 1 1 1 1 1 1 1 1 62498000 0 62498000 8352 2999 7782 44451 53696 53696 1 HVSPAGAAVGIPLSEDEAK Unmodified 1846.9425 0.94249171 892 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 By MS/MS 6 0.816 1 1 1 3 47.309 47.47 3 1.0429E-17 12781 20211116_3445_TMUAki_TMT10x_S_F6 147.92 129.08 1247200 2197500 19056 2547000 1295700 1303100 918760 3399800 3021300 2611000 2343000 1161400 2051900 121840 2555000 1234100 1451400 1016700 3327200 2957600 2582500 2281200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1247200 2197500 19056 2547000 1295700 1303100 918760 3399800 3021300 2611000 2343000 1161400 2051900 121840 2555000 1234100 1451400 1016700 3327200 2957600 2582500 2281200 1 1 1 1 1 1 1 1 1 1 1 143240000 0 143240000 8353 892 7783 44452;44453;44454 53697;53698;53699 53698 3 HVTVVGELSR Unmodified 1095.6037 0.60365701 2934 Q9NRW7;Q9NRW7-2 VPS45 Vacuolar protein sorting-associated protein 45 yes no 0 0 0 0 By MS/MS 5 0 1 1 31.552 31.694 3 0.081376 6187 20211116_3444_TMUAki_TMT10x_S_F5 33.761 21.492 139920 249890 541.67 247380 132630 110540 147990 76591 89597 94931 142910 130280 233170 12003 250500 127600 120290 147510 80135 95596 91959 136210 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 139920 249890 541.67 247380 132630 110540 147990 76591 89597 94931 142910 130280 233170 12003 250500 127600 120290 147510 80135 95596 91959 136210 1 1 1 1 1 1 1 1 1 1 1 1475100 0 1475100 8354 2934 7784 44455 53700 53700 1 HVVAVVLGDVGR Unmodified 1219.7037 0.70370541 2655 Q9BT22 ALG1 Chitobiosyldiphosphodolichol beta-mannosyltransferase yes yes 0 0 0 0 By matching By MS/MS 7.67 0.471 1 2 1 2 49.369 49.366 3 1.4792E-05 13364 20211116_3447_TMUAki_TMT10x_S_F8 101.35 85.734 943460 1463100 90634 1697000 935100 978060 927320 1172600 994950 1077500 1202800 879130 1366100 162570 1704000 901910 1045100 943130 1179600 1016600 1056300 1153900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 943460 1463100 90634 1697000 935100 978060 927320 1172600 994950 1077500 1202800 879130 1366100 162570 1704000 901910 1045100 943130 1179600 1016600 1056300 1153900 1 1 1 1 1 1 1 1 1 1 1 201190000 107490000 93701000 8355 2655 7785 44456;44457;44458 53701;53702 53702 2 HVVFGQVIK Unmodified 1025.6022 0.60220045 1549 Q08752 PPID Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 44.15 44.079 3 0.00010774 11856 20211116_3440_TMUAki_TMT10x_S_F2 130.27 113.33 1393700 2309500 17353 2461400 2633400 2701000 1768400 2224700 2359800 1832400 2286500 1297800 2155600 149090 2503900 2504400 2726100 1857300 2274200 2372200 1805800 2208000 2 2 2 2 2 2 2 2 2 2 2 852330 1313400 3072.9 1477500 2086500 2123300 1259400 1302700 1356800 1021000 1392400 793630 1226100 90813 1505400 1980000 2104800 1323700 1357400 1377300 1008700 1342100 1 1 1 1 1 1 1 1 1 1 1 541390 996140 14281 983840 546950 577620 509000 922060 1003000 811440 894100 504190 929460 58272 998480 524360 621240 533570 916790 994880 797050 865870 1 1 1 1 1 1 1 1 1 1 1 172650000 93772000 78878000 8356 1549 7786 44459;44460;44461 53703;53704 53704 2 HVVFIAQR Unmodified 968.55558 0.55558461 1332 P62081 RPS7 40S ribosomal protein S7 yes yes 0 0 0 0 By MS/MS By MS/MS 1.57 0.728 4 2 1 4 3 33.501 33.406 2;3 0.00015915 8850 20211116_3429_TMUAki_TMT10x_P_F2 146.21 129.53 3398800 6012600 13678 5672600 6767700 5814200 3814800 4206800 4320600 3538500 5330000 3164500 5609100 321570 5813100 6414500 5878300 4039600 4338300 4409100 3483400 5110400 6 6 3 6 6 6 6 6 6 6 6 2111300 3463400 13593 3353400 5304500 4717900 2585300 2435700 2582300 2111000 3347400 1965800 3231300 214910 3449100 5017600 4670900 2764500 2582000 2654300 2075000 3205500 4 4 2 4 4 4 4 4 4 4 4 1287400 2549200 85.652 2319200 1463200 1096300 1229500 1771100 1738300 1427600 1982600 1198700 2377800 106660 2364000 1396900 1207400 1275100 1756400 1754800 1408400 1904900 2 2 1 2 2 2 2 2 2 2 2 672330000 438700000 233630000 8357 1332 7787 44462;44463;44464;44465;44466;44467;44468 53705;53706;53707;53708;53709;53710 53707 6 HVVFTAETHNFPTGVCPFSGATTGTGGR Unmodified 2904.3613 0.36132483 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 0 By MS/MS By MS/MS 3.43 2.92 2 3 2 3 4 53.083 52.966 3;4 4.8798E-52 16754 20211116_3429_TMUAki_TMT10x_P_F2 199.75 192.63 23022000 38713000 380390 42450000 27420000 35659000 25256000 27438000 27042000 26889000 30271000 21438000 36137000 1949100 42940000 26254000 36561000 25787000 28296000 27547000 26284000 29102000 14 14 8 14 14 14 14 14 14 14 14 12976000 19786000 205280 21006000 17213000 25463000 16537000 14585000 14606000 13721000 15635000 12082000 18467000 1110000 21410000 16494000 25420000 16749000 15352000 14980000 13436000 15050000 7 7 4 7 7 7 7 7 7 7 7 10046000 18927000 175110 21444000 10207000 10196000 8719600 12853000 12436000 13168000 14636000 9355200 17670000 839030 21530000 9760000 11141000 9037500 12943000 12567000 12847000 14051000 7 7 4 7 7 7 7 7 7 7 7 13379000000 7655200000 5723400000 8358 157 7788 44469;44470;44471;44472;44473;44474;44475 53711;53712;53713;53714;53715;53716;53717;53718;53719;53720;53721;53722;53723;53724;53725 53715 15 HVVLGAIENKVESK Unmodified 1521.8515 0.85149185 997 P41227;P41227-2 NAA10 N-alpha-acetyltransferase 10 yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 50.961 50.955 4 6.6883E-14 14027 20211116_3447_TMUAki_TMT10x_S_F8 150.22 117.72 4631400 7578600 51269 8382700 10041000 10636000 5966800 8013000 7850900 6369200 7108400 4312600 7074600 507520 8528700 9528800 10637000 6323700 8230300 7878200 6288200 6880200 3 3 3 3 3 3 3 3 3 3 3 3505700 5510000 47056 6144100 8941200 9565800 5111200 5886300 5779700 4584400 5138600 3264500 5143800 410630 6274400 8479800 9451300 5405500 6131600 5827900 4531000 4976900 2 2 2 2 2 2 2 2 2 2 2 1125600 2068500 4212.9 2238600 1100100 1070400 855510 2126700 2071200 1784800 1969800 1048100 1930800 96891 2254300 1048900 1186200 918210 2098700 2050300 1757200 1903300 1 1 1 1 1 1 1 1 1 1 1 548780000 302400000 246380000 8359 997 7789 44476;44477 53726;53727;53728 53728 3 HVVQSISTQQEK Unmodified 1382.7154 0.7153923 793 P24539 ATP5F1 ATP synthase F(0) complex subunit B1, mitochondrial yes yes 0 0 0 0 By MS/MS 5 0 1 1 31.384 31.32 3 2.5968E-09 7234 20211116_3433_TMUAki_TMT10x_P_F5 151.55 131.79 357650 595040 1944.4 624180 672400 647660 373720 250010 293070 270520 406070 333020 555340 35872 635060 637340 649410 392200 274880 305690 263360 388220 1 1 1 1 1 1 1 1 1 1 1 357650 595040 1944.4 624180 672400 647660 373720 250010 293070 270520 406070 333020 555340 35872 635060 637340 649410 392200 274880 305690 263360 388220 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20622000 20622000 0 8360 793 7790 44478 53729 53729 1 HWELTAEGEEIAR Unmodified 1539.7318 0.73177065 3231 Q9Y285;Q9Y285-2 FARSA Phenylalanine--tRNA ligase alpha subunit yes no 0 0 0 0 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 3 4 45.115 45.022 3 8.8198E-12 13586 20211116_3429_TMUAki_TMT10x_P_F2 147.26 133.23 12527000 20128000 246420 24956000 17713000 18015000 13585000 15619000 15163000 14673000 17087000 11665000 18800000 1255200 25015000 16890000 18727000 14045000 15973000 15425000 14370000 16424000 9 9 6 9 9 9 9 9 9 9 9 5441800 8599000 63948 10882000 11353000 12526000 7971000 6978000 6722900 6516800 7331900 5066700 8032300 507900 10965000 10799000 12535000 8223500 7360900 6915600 6383600 7053900 4 4 1 4 4 4 4 4 4 4 4 7085300 11529000 182470 14074000 6360500 5488700 5614200 8641200 8440000 8156400 9755600 6598500 10767000 747330 14050000 6091000 6192000 5821200 8612200 8509300 7986000 9370200 5 5 5 5 5 5 5 5 5 5 5 1699300000 1142200000 557120000 8361 3231 7791 44479;44480;44481;44482;44483;44484;44485 53730;53731;53732;53733;53734;53735;53736;53737;53738 53731 9 HWGGNVLGPK Unmodified 1063.5563 0.55631289 1358 P62424 RPL7A 60S ribosomal protein L7a yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 40.466 40.484 3 0.00067056 12212 20211116_3439_TMUAki_TMT10x_S_F1 84.213 65.433 8244400 13237000 116910 15212000 18044000 13413000 10175000 8142500 10073000 7726900 11551000 7677200 12359000 929720 15353000 17111000 13657000 10729000 8532300 10305000 7563600 11097000 6 6 6 6 6 6 6 6 6 6 6 5006400 7748800 41621 8971900 15081000 11334000 7429600 4838600 6180600 4743200 6710700 4661700 7235000 594950 9101800 14271000 11254000 7897500 5244500 6361200 4636400 6457100 3 3 3 3 3 3 3 3 3 3 3 3238000 5488000 75290 6240600 2963000 2079600 2745100 3303800 3892800 2983700 4840300 3015500 5123700 334770 6251000 2840100 2402800 2831400 3287700 3943600 2927200 4639900 3 3 3 3 3 3 3 3 3 3 3 880880000 603490000 277390000 8362 1358 7792 44486;44487;44488;44489;44490;44491 53739;53740;53741;53742;53743;53744 53742 6 HWILPQDYDHAQAEAR Unmodified 1948.918 0.91800829 1787 Q15293;Q15293-2 RCN1 Reticulocalbin-1 yes no 0 0 0 0 By MS/MS By MS/MS 5.25 0.829 1 1 2 1 3 42.15 42.286 4 1.6383E-10 10354 20211116_3434_TMUAki_TMT10x_P_F6 125.28 106.45 4203100 7028900 69531 8409600 7562700 6359600 5322900 6065300 5481100 5384100 6737700 3914000 6563900 355360 8451000 7199400 6598600 5521200 6161300 5613800 5286500 6460700 5 5 4 5 5 5 5 5 5 5 5 1858600 3223900 63603 3824300 5111400 4419900 2962300 2781800 2663900 2533400 3092800 1731000 3010500 153970 3867900 4850900 4429200 3107900 2903600 2738300 2484400 2970300 2 2 1 2 2 2 2 2 2 2 2 2344500 3805000 5927.4 4585300 2451300 1939700 2360500 3283500 2817300 2850700 3644900 2183000 3553400 201390 4583100 2348500 2169400 2413300 3257700 2875500 2802000 3490500 3 3 3 3 3 3 3 3 3 3 3 811950000 341030000 470920000 8363 1787 7793 44492;44493;44494;44495 53745;53746;53747;53748;53749 53745 5 HWPFMVVNDAGRPK Oxidation (M) 1668.8195 0.81948022 615 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 1 1 By MS/MS By MS/MS 2.79 1.96 4 7 5 1 2 10 9 45.351 45.263 2;3;4 1.8786E-23 13847 20211116_3429_TMUAki_TMT10x_P_F2 166.34 149.31 110820000 181430000 886850 212310000 144230000 137470000 112020000 82325000 72432000 87354000 134110000 103180000 169400000 9557900 213290000 137480000 143420000 114080000 86636000 77608000 85107000 127460000 32 32 19 32 32 32 32 32 32 32 32 45099000 66773000 149730 80108000 83083000 81227000 55921000 26448000 25126000 32733000 48857000 41991000 62356000 4234500 80798000 78978000 81449000 57190000 29843000 27751000 31710000 46396000 14 14 5 14 14 14 14 14 14 14 14 65721000 114650000 737120 132200000 61148000 56238000 56095000 55877000 47306000 54621000 85253000 61192000 107050000 5323400 132490000 58500000 61969000 56892000 56793000 49857000 53397000 81066000 18 18 14 18 18 18 18 18 18 18 18 36409000000 22155000000 14254000000 8364 615 7794 44496;44497;44498;44499;44500;44501;44502;44503;44504;44505;44506;44507;44508;44509;44510;44511;44512;44513;44514 53750;53751;53752;53753;53754;53755;53756;53757;53758;53759;53760;53761;53762;53763;53764;53765;53766;53767;53768;53769;53770;53771;53772;53773;53774;53775;53776;53777;53778;53779;53780;53781;53782;53783 53758 616 34 HWPFMVVNDAGRPK Unmodified 1652.8246 0.8245656 615 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 1 By MS/MS By MS/MS 2.77 1.05 2 3 4 4 7 6 50.496 50.397 3;4 1.6222E-29 14448 20211116_3431_TMUAki_TMT10x_P_F4 204.85 176.94 85804000 125280000 591360 167340000 110320000 94978000 91722000 55958000 51162000 54155000 90910000 79895000 117050000 7740200 166660000 105330000 100340000 92754000 58809000 55233000 52965000 86467000 23 23 14 23 23 23 23 23 23 23 23 54742000 76811000 377530 103740000 85196000 77283000 67250000 37084000 33324000 35727000 57461000 50972000 71773000 5138900 103540000 81250000 79460000 68103000 39693000 36243000 34949000 54684000 15 15 10 15 15 15 15 15 15 15 15 31062000 48466000 213830 63594000 25119000 17695000 24472000 18873000 17838000 18428000 33449000 28923000 45281000 2601300 63122000 24076000 20884000 24651000 19116000 18991000 18016000 31783000 8 8 4 8 8 8 8 8 8 8 8 22682000000 14545000000 8137000000 8365 615 7794 44515;44516;44517;44518;44519;44520;44521;44522;44523;44524;44525;44526;44527 53784;53785;53786;53787;53788;53789;53790;53791;53792;53793;53794;53795;53796;53797;53798;53799;53800;53801;53802;53803;53804;53805;53806 53798 23 HWPFQVINDGDKPK Unmodified 1679.842 0.8419898 596 P0DMV8;P0DMV9 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 0 1 By MS/MS By MS/MS 6.33 2.49 1 1 1 3 3 3 52.076 52.144 3;4 5.6161E-19 15053 20211116_3436_TMUAki_TMT10x_P_F8 167.32 154.45 46470000 71394000 1374500 87974000 66408000 57211000 52726000 38795000 33787000 40043000 60373000 43278000 66681000 5396900 88117000 63413000 59766000 53611000 40411000 36144000 39056000 57417000 8 8 6 8 8 8 8 8 8 8 8 16426000 25669000 972070 33946000 38206000 32731000 26816000 13635000 10834000 13927000 22680000 15302000 23983000 2556800 34028000 36405000 32990000 27301000 14835000 12142000 13590000 21512000 4 4 2 4 4 4 4 4 4 4 4 30044000 45726000 402450 54028000 28202000 24480000 25910000 25161000 22952000 26115000 37694000 27977000 42698000 2840100 54089000 27009000 26776000 26310000 25576000 24002000 25466000 35905000 4 4 4 4 4 4 4 4 4 4 4 5881300000 3089100000 2792200000 8366 596 7795 44528;44529;44530;44531;44532;44533 53807;53808;53809;53810;53811;53812;53813;53814 53810 8 HYAHTDCPGHADYVK Unmodified 1769.758 0.75800217 1097 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 By MS/MS 4.67 0.471 1 2 3 28.963 28.931 4;5 0.0014629 6261 20211116_3433_TMUAki_TMT10x_P_F5 63.76 45.396 283470 584130 8215.7 489620 586560 473680 352420 294430 304460 260090 364490 264000 544700 35403 505930 557030 479510 368230 307370 313970 255430 349750 2 2 2 2 2 2 2 2 2 2 2 283470 584130 8215.7 489620 586560 473680 352420 294430 304460 260090 364490 264000 544700 35403 505930 557030 479510 368230 307370 313970 255430 349750 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30559000 30559000 0 8367 1097 7796 44534;44535;44536 53815;53816 53816 2 HYCYPHFTCAVDTENIR Unmodified 2181.936 0.93604289 1393 P63092;Q5JWF2;P63092-4;Q5JWF2-2;P63092-3;P63092-2;P38405;P38405-2;P38405-3 GNAS;GNAL Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(olf) subunit alpha yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 42.107 42.21 4 6.2458E-05 10633 20211116_3445_TMUAki_TMT10x_S_F6 81.448 71.917 2528600 4006000 63397 4143700 3486700 4293300 2855600 3044200 3059000 2729500 3583300 2354900 3738600 282140 4219800 3331200 4336400 2935800 3148800 3121700 2678800 3440500 2 2 2 2 2 2 2 2 2 2 2 1623100 2739500 39680 2791200 2611400 3510700 1937400 2020900 2078100 1742000 2408700 1511500 2556500 185380 2854600 2489400 3498600 2004800 2121500 2119700 1712800 2313400 1 1 1 1 1 1 1 1 1 1 1 905570 1266500 23718 1352500 875270 782560 918160 1023300 980880 987570 1174600 843360 1182100 96758 1365200 841770 837780 931030 1027200 1002000 965980 1127100 1 1 1 1 1 1 1 1 1 1 1 165750000 122550000 43201000 8368 1393 7797 44537;44538 53817;53818 53818 2 HYDDFFER Unmodified 1127.4672 0.46722311 2929 Q9NRL2;Q9NRL2-2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 42.025 42.16 3 0.0037738 11296 20211116_3431_TMUAki_TMT10x_P_F4 79.893 66.314 1488000 2495900 48794 2553900 2167300 2533400 1993800 1999300 1694000 1786900 2276400 1385800 2329200 178350 2601000 2076700 2570100 2022200 2053400 1757200 1754000 2178000 2 2 2 2 2 2 2 2 2 2 2 888490 1432900 45966 1350000 1304800 1838500 1311900 1082700 888370 1022000 1286500 827610 1336700 122330 1390400 1254100 1825800 1317200 1137100 936430 1000600 1228700 1 1 1 1 1 1 1 1 1 1 1 599480 1063000 2827.1 1203900 862520 694940 681950 916610 805650 764950 989940 558200 992420 56020 1210600 822660 744330 705000 916220 820740 753340 949260 1 1 1 1 1 1 1 1 1 1 1 123350000 61275000 62078000 8369 2929 7798 44539;44540;44541 53819;53820;53821 53820 3 HYDLNQLLEPR Unmodified 1396.7099 0.709913 1194 P52948;P52948-6;P52948-5 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 0 0 0 0 By MS/MS 5 0 1 1 53.452 53.633 3 0.017908 14990 20211116_3444_TMUAki_TMT10x_S_F5 55.258 35.599 1696400 3076500 29289 2663000 1745700 1895200 1537000 3602300 3450600 3139800 2702900 1579700 2869100 168630 2734400 1670300 2016400 1629200 3562600 3400200 3085500 2630500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1696400 3076500 29289 2663000 1745700 1895200 1537000 3602300 3450600 3139800 2702900 1579700 2869100 168630 2734400 1670300 2016400 1629200 3562600 3400200 3085500 2630500 1 1 1 1 1 1 1 1 1 1 1 253850000 0 253850000 8370 1194 7799 44542 53822 53822 1 HYEVEILDAK Unmodified 1215.6136 0.61355299 3027 Q9NZ01;Q9NZ01-2 TECR Very-long-chain enoyl-CoA reductase yes no 0 0 0 0 By MS/MS By MS/MS 3.29 1.03 2 2 2 1 3 4 48.455 48.414 3 2.2943E-05 14149 20211116_3442_TMUAki_TMT10x_S_F4 130.41 100.61 19678000 31624000 327970 35563000 29581000 28212000 21683000 22679000 21635000 20734000 26994000 18325000 29523000 2075600 35892000 28185000 29070000 22406000 23279000 22202000 20330000 25875000 9 9 8 9 9 9 9 9 9 9 9 8771000 13616000 176010 15529000 18172000 17938000 10666000 9619700 9134500 8542500 11376000 8168000 12713000 1022900 15743000 17246000 17939000 11164000 10168000 9439300 8387400 10904000 3 3 3 3 3 3 3 3 3 3 3 10907000 18007000 151960 20033000 11409000 10274000 11017000 13059000 12500000 12192000 15619000 10157000 16810000 1052700 20148000 10939000 11131000 11242000 13111000 12762000 11943000 14970000 6 6 5 6 6 6 6 6 6 6 6 2334700000 1152100000 1182500000 8371 3027 7800 44543;44544;44545;44546;44547;44548;44549 53823;53824;53825;53826;53827;53828;53829;53830;53831 53829 9 HYFCESCALQHFR Unmodified 1753.7453 0.745329 195 O15541 RNF113A RING finger protein 113A yes yes 0 0 0 0 By MS/MS 7 0 1 1 38.551 38.99 4 4.0114E-06 10906 20211116_3435_TMUAki_TMT10x_P_F7 105.94 97.243 378240 567570 0 597300 721500 826550 470630 431260 453320 427000 506340 352160 529710 32672 610680 685280 819010 489970 458300 463810 417200 486800 1 1 0 1 1 1 1 1 1 1 1 378240 567570 0 597300 721500 826550 470630 431260 453320 427000 506340 352160 529710 32672 610680 685280 819010 489970 458300 463810 417200 486800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25566000 25566000 0 8372 195 7801 44550 53832 53832 1 HYFIEVNSR Unmodified 1163.5724 0.57235688 628 P11498;P11498-2 PC Pyruvate carboxylase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 35.991 36.063 3 0.00015381 8201 20211116_3444_TMUAki_TMT10x_S_F5 123.86 86.516 368630 556020 1886 618210 423390 429470 334610 492100 527160 439210 501490 343250 519060 33087 623460 403850 450570 350020 495590 526960 431140 484560 2 2 2 2 2 2 2 2 2 2 2 98439 175260 1421.8 172780 198620 218680 123230 129500 116480 112750 124470 91667 163520 10889 177130 188640 217940 128730 135660 119080 110810 119820 1 1 1 1 1 1 1 1 1 1 1 270190 380760 464.18 445430 224760 210800 211380 362610 410680 326460 377020 251580 355530 22197 446330 215210 232630 221280 359930 407880 320320 364740 1 1 1 1 1 1 1 1 1 1 1 54277000 17979000 36298000 8373 628 7802 44551;44552 53833;53834 53834 2 HYFQNTQGLIFVVDSNDRER Unmodified 2437.1775 0.17747045 1301;1453;715 P84085;P61204;P84077;P18085 ARF5;ARF3;ARF1;ARF4 ADP-ribosylation factor 5;ADP-ribosylation factor 3;ADP-ribosylation factor 1;ADP-ribosylation factor 4 no no 0 0 0 1 By MS/MS By MS/MS 6.4 0.917 2 3 4 1 4 6 54.764 55.095 3;4 3.3357E-51 17316 20211116_3435_TMUAki_TMT10x_P_F7 228.46 211.97 72244000 117140000 3142400 121810000 77383000 126910000 83555000 96479000 95536000 95850000 96396000 67289000 109320000 7977500 124010000 74538000 128290000 84802000 99610000 96697000 93638000 92963000 18 18 12 18 18 18 18 18 18 18 18 33459000 47546000 463520 51913000 39331000 78958000 42818000 42017000 39897000 38611000 40300000 31157000 44382000 2546600 53056000 37826000 77939000 43159000 44483000 40730000 37850000 38864000 8 8 5 8 8 8 8 8 8 8 8 38785000 69590000 2678800 69897000 38052000 47957000 40738000 54462000 55639000 57238000 56095000 36132000 64936000 5430800 70957000 36713000 50355000 41643000 55128000 55967000 55788000 54099000 10 10 7 10 10 10 10 10 10 10 10 25832000000 12859000000 12974000000 8374 1453;1301;715 7803 44553;44554;44555;44556;44557;44558;44559;44560;44561;44562 53835;53836;53837;53838;53839;53840;53841;53842;53843;53844;53845;53846;53847;53848;53849;53850;53851;53852;53853 53840 19 HYGGLTGLNK Unmodified 1058.5509 0.55089316 722 P18669;P15259;Q8N0Y7 PGAM1;PGAM2;PGAM4 Phosphoglycerate mutase 1;Phosphoglycerate mutase 2;Probable phosphoglycerate mutase 4 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 30.556 30.612 3 0.00019842 8885 20211116_3428_TMUAki_TMT10x_P_F1 105.4 71.01 3435700 5521700 97166 6058800 4531300 3662800 3682500 3825500 3689500 3055500 4584600 3199700 5154400 390750 6107300 4329400 3882900 3779900 3858200 3784900 3015900 4394900 3 3 3 3 3 3 3 3 3 3 3 604060 953370 11671 1164800 1811600 1419700 843050 715280 665890 579210 916920 562530 890380 77871 1177100 1713400 1414700 900310 758720 694090 571290 876750 1 1 1 1 1 1 1 1 1 1 1 2831700 4568300 85495 4894100 2719700 2243100 2839500 3110200 3023600 2476300 3667700 2637200 4264000 312880 4930100 2616000 2468200 2879600 3099500 3090800 2444600 3518100 2 2 2 2 2 2 2 2 2 2 2 939550000 645910000 293640000 8375 722 7804 44563;44564;44565;44566 53854;53855;53856 53854 3 HYGGLTGLNKAETAAK Unmodified 1629.8475 0.84746911 722 P18669;P15259;Q8N0Y7 PGAM1;PGAM2;PGAM4 Phosphoglycerate mutase 1;Phosphoglycerate mutase 2;Probable phosphoglycerate mutase 4 yes no 0 0 0 1 By matching By MS/MS 8 0 2 1 1 37.715 38.072 4 1.3377E-10 8634 20211116_3447_TMUAki_TMT10x_S_F8 131.61 93.242 965470 1629400 8985.7 1491600 1100900 955320 1015400 1856800 2197800 1384300 1662400 899010 1519900 90315 1523400 1054000 1026600 1071000 1828200 2165100 1371400 1620200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 965470 1629400 8985.7 1491600 1100900 955320 1015400 1856800 2197800 1384300 1662400 899010 1519900 90315 1523400 1054000 1026600 1071000 1828200 2165100 1371400 1620200 2 2 2 2 2 2 2 2 2 2 2 31217000 12161000 19057000 8376 722 7805 44567;44568 53857;53858 53857 2 HYGPGWVSMANAGK Unmodified 1473.6823 0.68231804 779 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 45.911 45.804 3 2.5801E-14 13873 20211116_3429_TMUAki_TMT10x_P_F2 153.74 125.88 15152000 26061000 52921 30896000 32153000 26043000 23222000 11257000 9283300 10244000 17471000 14109000 24336000 1540700 31105000 30609000 26498000 23590000 12161000 10345000 10046000 16600000 5 5 4 5 5 5 5 5 5 5 5 12803000 21983000 52921 26229000 30380000 24723000 21690000 9824100 8031800 8915400 14820000 11921000 20528000 1356900 26435000 28914000 24944000 22033000 10713000 9009500 8744700 14086000 4 4 4 4 4 4 4 4 4 4 4 2349700 4078800 0 4667500 1773800 1320700 1531500 1432700 1251500 1328200 2651800 2187800 3808200 183730 4670000 1694600 1554300 1557500 1447900 1335100 1301500 2514700 1 1 0 1 1 1 1 1 1 1 1 943240000 743660000 199580000 8377 779 7806 44569;44570;44571 53859;53860;53861;53862;53863 53861 5 HYGPGWVSMANAGK Oxidation (M) 1489.6772 0.67723266 779 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 1 0 By MS/MS By MS/MS 6 2.88 1 1 1 4 4 3 37.361 37.592 3;4 1.2135E-06 8613 20211116_3436_TMUAki_TMT10x_P_F8 114.24 92.988 4586100 7227600 164800 8500200 7213700 6402900 5845700 4576300 4627400 4313200 6244800 4271200 6748900 549670 8550400 6891100 6611200 5963400 4737200 4818300 4223300 5974100 10 10 6 10 10 10 10 10 10 10 10 1891000 2699700 3157.7 3190700 4629500 4128100 2810900 2347300 2128300 1926500 2464100 1760600 2521000 177130 3234400 4392000 4107600 2925100 2463900 2206900 1898800 2366600 5 5 1 5 5 5 5 5 5 5 5 2695100 4527800 161640 5309500 2584300 2274800 3034900 2229000 2499100 2386700 3780800 2510600 4227900 372540 5315900 2499000 2503600 3038200 2273300 2611400 2324500 3607500 5 5 5 5 5 5 5 5 5 5 5 452050000 275560000 176490000 8378 779 7806 44572;44573;44574;44575;44576;44577;44578 53864;53865;53866;53867;53868;53869;53870;53871;53872;53873;53874 53866 918 11 HYIFNPR Unmodified 945.48209 0.48208531 3025 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 33.377 33.382 3 0.001571 7304 20211116_3428_TMUAki_TMT10x_P_F1 114.54 88.803 452790 695070 6535.3 803560 733760 785060 511910 469600 507220 461590 583160 421640 648980 47565 811820 698380 793820 530710 493130 518910 451140 560200 2 2 2 2 2 2 2 2 2 2 2 201910 312870 6190.7 345110 487130 494730 246410 218070 246450 210040 250590 188040 292070 26504 352030 461410 488550 262530 235440 250870 205460 241600 1 1 1 1 1 1 1 1 1 1 1 250880 382200 344.59 458450 246630 290330 265510 251520 260770 251550 332570 233590 356920 21061 459790 236970 305270 268180 257690 268050 245680 318600 1 1 1 1 1 1 1 1 1 1 1 60350000 39077000 21273000 8379 3025 7807 44579;44580 53875;53876 53875 2 HYLFDVQR Unmodified 1076.5403 0.54032847 793 P24539 ATP5F1 ATP synthase F(0) complex subunit B1, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 39.181 39.507 3 0.0010294 9558 20211116_3445_TMUAki_TMT10x_S_F6 105.57 91.989 2094800 3180300 27319 3449200 4131300 3787900 2869600 2775900 2591500 2264300 2883400 1950600 2968600 221770 3504800 3930900 3815200 2968100 2858100 2659000 2232500 2772500 6 6 4 6 6 6 6 6 6 6 6 1647700 2483000 13804 2690300 3676700 3427400 2427700 2086800 1957200 1685300 2240100 1534300 2317700 173930 2741000 3494600 3416000 2513300 2177400 2021800 1662500 2152200 3 3 2 3 3 3 3 3 3 3 3 447060 697310 13515 758860 454630 360440 441860 689040 634270 578950 643320 416350 650890 47834 763860 436290 399160 454830 680690 637160 569970 620310 3 3 2 3 3 3 3 3 3 3 3 243060000 152450000 90612000 8380 793 7808 44581;44582;44583;44584 53877;53878;53879;53880;53881;53882 53880 6 HYLFYDGESVSGK Unmodified 1500.6885 0.68850885 334 O75436;O75436-2 VPS26A Vacuolar protein sorting-associated protein 26A yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 49.275 49.418 3 2.0188E-06 13204 20211116_3434_TMUAki_TMT10x_P_F6 111.79 90.492 15832000 29108000 0 31318000 25948000 33210000 19167000 29071000 29850000 25234000 26805000 14740000 27169000 946740 31822000 24700000 33623000 20128000 29651000 29792000 24803000 25952000 4 4 0 4 4 4 4 4 4 4 4 8681000 15799000 0 17201000 17675000 26278000 13612000 13837000 15342000 13305000 13021000 8081900 14747000 723250 17585000 16838000 25931000 14073000 14680000 15450000 13016000 12633000 2 2 0 2 2 2 2 2 2 2 2 7150500 13309000 0 14117000 8272700 6932600 5555600 15234000 14508000 11929000 13784000 6657700 12422000 223490 14237000 7862300 7692100 6054500 14971000 14342000 11787000 13319000 2 2 0 2 2 2 2 2 2 2 2 1780900000 854150000 926740000 8381 334 7809 44585;44586;44587;44588 53883;53884;53885;53886;53887 53884 5 HYLHIIENKPLYPVIYDSNGVVLSMPPIINGDHSR Unmodified 4000.0669 0.066927719 2941 Q9NSD9;Q9NSD9-2 FARSB Phenylalanine--tRNA ligase beta subunit yes no 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 98.312 98.28 6 5.9592E-07 34872 20211116_3429_TMUAki_TMT10x_P_F2 75.248 66.027 128300 186800 2438.7 153200 89097 213010 132820 125100 138070 147340 155840 119480 174180 12361 159560 86677 211340 132600 132300 140860 142980 149780 1 1 1 1 1 1 1 1 1 1 1 128300 186800 2438.7 153200 89097 213010 132820 125100 138070 147340 155840 119480 174180 12361 159560 86677 211340 132600 132300 140860 142980 149780 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13125000 13125000 0 8382 2941 7810 44589;44590 53888 53888 1 HYPVFENPK Unmodified 1129.5556 0.55564418 1242 P55265;P55265-5;P55265-4;P55265-3;P55265-2 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 38.267 38.489 3 0.013551 8772 20211116_3434_TMUAki_TMT10x_P_F6 58.596 39.816 2150600 3766100 97991 3906400 5502100 4979900 2782400 2270500 3000700 2136900 3092100 2003100 3514700 304680 3991300 5212500 4946100 2971200 2441200 3046400 2092500 2980000 2 2 1 2 2 2 2 2 2 2 2 2150600 3766100 97991 3906400 5502100 4979900 2782400 2270500 3000700 2136900 3092100 2003100 3514700 304680 3991300 5212500 4946100 2971200 2441200 3046400 2092500 2980000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 115340000 115340000 0 8383 1242 7811 44591;44592 53889;53890 53889 2 HYRGPAGDATVASEK Unmodified 1557.7536 0.75356872 1827 Q15758;Q15758-3;Q15758-2 SLC1A5 Neutral amino acid transporter B(0) yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 29.912 29.897 4 0.00013504 6650 20211116_3433_TMUAki_TMT10x_P_F5 83.633 63.252 654720 1162700 4486 1038000 1428100 1468500 907070 706450 875180 745240 922360 609610 1084500 65623 1074200 1356300 1452400 946340 757890 893410 726240 888310 3 3 1 3 3 3 3 3 3 3 3 654720 1162700 4486 1038000 1428100 1468500 907070 706450 875180 745240 922360 609610 1084500 65623 1074200 1356300 1452400 946340 757890 893410 726240 888310 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28846000 28846000 0 8384 1827 7812 44593;44594 53891;53892;53893 53893 3 HYYEVSCHDQGLCR Unmodified 1822.7515 0.75153659 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 By MS/MS 4.5 0.5 2 2 4 30.9 30.885 3;4 4.3253E-44 7035 20211116_3433_TMUAki_TMT10x_P_F5 273.72 259.81 720740 1140200 2211.2 1907400 3248600 2279000 1009200 794830 954620 611770 1083200 671010 1066800 86731 1897200 3058000 2265400 1139100 877550 978110 605020 1040900 5 5 3 5 5 5 5 5 5 5 5 720740 1140200 2211.2 1907400 3248600 2279000 1009200 794830 954620 611770 1083200 671010 1066800 86731 1897200 3058000 2265400 1139100 877550 978110 605020 1040900 5 5 3 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 322680000 322680000 0 8385 2334 7813 44595;44596;44597;44598 53894;53895;53896;53897;53898 53898 5 IAAAGLDVTSPEPLPTNHPLLTLK Unmodified 2467.3686 0.36862527 3085 Q9UBQ7 GRHPR Glyoxylate reductase/hydroxypyruvate reductase yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 2 4 3 3 73.469 73.502 3;4 2.4553E-38 23775 20211116_3436_TMUAki_TMT10x_P_F8 195.56 181.54 28377000 46965000 40384 43131000 31153000 48436000 34955000 30105000 27341000 31403000 36272000 26422000 43809000 2136300 44351000 29963000 48604000 35022000 31573000 28465000 30616000 34714000 8 8 2 8 8 8 8 8 8 8 8 21028000 34009000 40384 31882000 21113000 39759000 25142000 21824000 19532000 22892000 26082000 19579000 31726000 1522000 32793000 20344000 39615000 25119000 23126000 20348000 22313000 24958000 5 5 2 5 5 5 5 5 5 5 5 7348800 12956000 0 11249000 10040000 8676600 9812300 8280700 7808900 8511000 10190000 6842200 12083000 614280 11558000 9618600 8989000 9902900 8446100 8116400 8302800 9756100 3 3 0 3 3 3 3 3 3 3 3 7467900000 3463300000 4004600000 8386 3085 7814 44599;44600;44601;44602;44603;44604 53899;53900;53901;53902;53903;53904;53905;53906 53901 8 IAAAILNTPDLR Unmodified 1266.7296 0.7295858 471 P00505;P00505-2 GOT2 Aspartate aminotransferase, mitochondrial yes no 0 0 0 0 By MS/MS 8 0 1 1 66.348 66.261 2 1.9006E-05 20221 20211116_3447_TMUAki_TMT10x_S_F8 102.52 73.566 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8387 471 7815 44605 53907 53907 1 IAAAILNTPDLRK Unmodified 1394.8245 0.82454882 471 P00505;P00505-2 GOT2 Aspartate aminotransferase, mitochondrial yes no 0 0 0 1 By MS/MS 3 0 1 1 60.286 59.867 3 8.5745E-09 21164 20211116_3441_TMUAki_TMT10x_S_F3 119.69 90.962 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8388 471 7816 44606 53908 53908 1 IAAEIAQAEEQAR Unmodified 1398.7103 0.71030693 2393 Q969G3;Q969G3-6;Q969G3-5;Q969G3-3;Q969G3-2;Q969G3-4 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 0 0 0 0 By MS/MS 1 0 1 1 57.819 57.819 2 0.001461 17211 20211116_3428_TMUAki_TMT10x_P_F1 74.15 56.286 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8389 2393 7817 44607 53909 53909 1 IAAGEKIPLSQEEITLQGHAFEAR Unmodified 2607.3657 0.36566515 2544 Q96RQ3 MCCC1 Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial yes yes 0 0 0 1 By MS/MS 6 0 1 1 59.724 59.746 4 2.9037E-05 17877 20211116_3445_TMUAki_TMT10x_S_F6 74.763 64.975 2262800 4455400 52258 4093900 2557600 2948100 2563200 3512300 3535900 3397900 3463500 2107300 4156000 240430 4184800 2455600 3086600 2629800 3539100 3552000 3323300 3343300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2262800 4455400 52258 4093900 2557600 2948100 2563200 3512300 3535900 3397900 3463500 2107300 4156000 240430 4184800 2455600 3086600 2629800 3539100 3552000 3323300 3343300 1 1 1 1 1 1 1 1 1 1 1 399500000 0 399500000 8390 2544 7818 44608 53910 53910 1 IAAGEVIQRPANAIK Unmodified 1549.894 0.89402537 985 P40692 MLH1 DNA mismatch repair protein Mlh1 yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 3 2 1 44.806 44.9 3 1.1542E-09 12018 20211116_3436_TMUAki_TMT10x_P_F8 107.5 75.434 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8391 985 7819 44609;44610;44611 53911;53912;53913 53911 3 IAAGLPMAGIPFLTTDLTYR Unmodified 2120.134 0.13399765 2764 Q9H061 TMEM126A Transmembrane protein 126A yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 3 2 1 81.504 81.502 3 5.8101E-09 27694 20211116_3442_TMUAki_TMT10x_S_F4 104.61 94.27 1609500 2790000 7086.2 2599300 1719500 2435300 1940800 1411000 1284200 1460300 2039400 1498600 2602600 131740 2662700 1654100 2468000 1936700 1487700 1361900 1424200 1943900 2 2 1 2 2 2 2 2 2 2 2 889640 1484600 0 1336900 812190 1506400 867120 736400 615060 735100 1042800 828270 1384700 62831 1376800 779510 1506800 868880 787540 651930 717990 992720 1 1 0 1 1 1 1 1 1 1 1 719860 1305400 7086.2 1262400 907330 928970 1073700 674560 669090 725180 996580 670320 1217900 68911 1285900 874600 961230 1067900 700200 710010 706170 951220 1 1 1 1 1 1 1 1 1 1 1 411220000 208240000 202980000 8392 2764 7820 44612;44613;44614 53914;53915;53916 53916 3 IAALQAFADQLIAAGHYAK Unmodified 1971.0578 0.057796236 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.8 0.748 2 2 1 3 2 80.372 80.371 3 7.6875E-41 25973 20211116_3444_TMUAki_TMT10x_S_F5 200.48 185.06 19487000 30815000 320470 29093000 21859000 30164000 22803000 18340000 18926000 19544000 22536000 18146000 28748000 1865200 29817000 20997000 30397000 22960000 19280000 19551000 19038000 21628000 6 6 5 6 6 6 6 6 6 6 6 12097000 19019000 215850 18151000 11883000 21632000 13292000 11472000 11648000 12284000 13791000 11264000 17744000 1118800 18631000 11437000 21594000 13358000 12201000 11998000 11964000 13237000 4 4 3 4 4 4 4 4 4 4 4 7390900 11796000 104620 10941000 9976100 8532400 9510400 6868000 7277100 7259900 8745100 6882400 11004000 746460 11186000 9560100 8803500 9602000 7078700 7553000 7074200 8390600 2 2 2 2 2 2 2 2 2 2 2 10136000000 4064400000 6071300000 8393 1663 7821 44615;44616;44617;44618;44619 53917;53918;53919;53920;53921;53922 53922 6 IAAYLFK Unmodified 824.47963 0.47962569 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 70.254 69.974 2 0.0024249 24303 20211116_3430_TMUAki_TMT10x_P_F3 126.05 70.651 11981000 19592000 102760 20342000 14223000 15600000 12892000 12234000 11317000 11142000 14464000 11156000 18284000 1120500 20629000 13610000 16109000 13097000 12576000 11694000 10927000 13855000 3 3 3 3 3 3 3 3 3 3 3 3010900 5150400 26651 5254200 5402200 8128900 3970800 4199600 4000600 3782000 4049700 2803600 4806200 307950 5395800 5145500 8015500 4103500 4455700 4070300 3710900 3905100 1 1 1 1 1 1 1 1 1 1 1 8970000 14441000 76113 15088000 8820600 7470800 8920900 8034900 7316700 7360200 10414000 8352500 13478000 812520 15233000 8464800 8093300 8993900 8120600 7623500 7216100 9950000 2 2 2 2 2 2 2 2 2 2 2 795770000 272940000 522830000 8394 1471 7822 44620;44621;44622;44623 53923;53924;53925;53926 53923 4 IACLDFSLQK Unmodified 1193.6114 0.6114445 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 70.132 70.213 3 0.0001908 22369 20211116_3436_TMUAki_TMT10x_P_F8 106.18 58.355 2710800 4134000 0 4179900 3235500 4764500 3206600 2448800 2137500 2495400 2894700 2523900 3857600 219900 4269700 3100800 4765600 3221000 2608000 2248200 2435200 2769000 1 1 0 1 1 1 1 1 1 1 1 2710800 4134000 0 4179900 3235500 4764500 3206600 2448800 2137500 2495400 2894700 2523900 3857600 219900 4269700 3100800 4765600 3221000 2608000 2248200 2435200 2769000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 501220000 501220000 0 8395 712 7823 44624;44625 53927;53928 53927 2 IADDKYNDTFWK Unmodified 1514.7042 0.70415892 672 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 1 By MS/MS 6 0 1 1 58.719 58.779 3 0.0008082 17044 20211116_3434_TMUAki_TMT10x_P_F6 77.527 50.9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8396 672 7824 44626 53929 53929 1 IADGYEQAAR Unmodified 1092.52 0.51998696 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 3 1 34.895 34.655 2 1.0677E-08 9350 20211116_3429_TMUAki_TMT10x_P_F2 135.72 95.62 1319600 2285300 0 2142000 1645400 1232700 1736200 1171900 1212100 1155200 1762900 1228600 2131900 104360 2181700 1579400 1310500 1740200 1194100 1275600 1128900 1683600 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1319600 2285300 0 2142000 1645400 1232700 1736200 1171900 1212100 1155200 1762900 1228600 2131900 104360 2181700 1579400 1310500 1740200 1194100 1275600 1128900 1683600 2 2 0 2 2 2 2 2 2 2 2 132410000 0 132410000 8397 1079 7825 44627;44628;44629;44630 53930;53931;53932;53933;53934 53931 5 IADLGNACWVHK Unmodified 1382.6765 0.67650438 2553 Q96SB4;Q96SB4-3;Q96SB4-4;P78362;Q9UPE1;Q9UPE1-2;Q9UPE1-3;Q9UPE1-4;P78362-2 SRPK1;SRPK2;SRPK3 SRSF protein kinase 1;SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal;SRSF protein kinase 3 yes no 0 0 0 0 By MS/MS 8 0 1 1 55.814 55.947 3 0.0020472 16532 20211116_3436_TMUAki_TMT10x_P_F8 67.997 51.773 1307500 2607400 6319.5 2398400 2429500 3098000 2090400 2024400 1796700 1502400 1932200 1217400 2432200 130000 2472000 2321300 3088800 2129000 2096800 1845500 1488800 1859700 1 1 1 1 1 1 1 1 1 1 1 1307500 2607400 6319.5 2398400 2429500 3098000 2090400 2024400 1796700 1502400 1932200 1217400 2432200 130000 2472000 2321300 3088800 2129000 2096800 1845500 1488800 1859700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 153960000 153960000 0 8398 2553 7826 44631 53935 53935 1 IADMGHLK Oxidation (M) 899.45349 0.4534873 635 P12004 PCNA Proliferating cell nuclear antigen yes yes 0 0 1 0 By MS/MS By MS/MS 5 0.816 1 1 1 2 1 32.368 32.416 3 0.049146 7371 20211116_3431_TMUAki_TMT10x_P_F4 42.599 22.039 947620 1593700 20529 1407500 1495200 1928200 1085200 1008800 1099100 896510 1248200 882480 1486400 105310 1456800 1424600 1911500 1122700 1068800 1122800 880210 1199500 2 2 1 2 2 2 2 2 2 2 2 906730 1507200 20529 1333700 1443700 1880500 1024300 986490 1079900 867430 1189200 844410 1405800 101830 1381000 1375000 1861900 1062600 1044500 1100100 852080 1143800 1 1 1 1 1 1 1 1 1 1 1 40888 86458 0 73813 51442 47684 60962 22359 19134 29085 58970 38070 80627 3486.7 75803 49561 49620 60044 24212 22709 28128 55653 1 1 0 1 1 1 1 1 1 1 1 132220000 130980000 1232500 8399 635 7827 44632;44633;44634 53936;53937 53936 664 2 IADNHTPK Unmodified 894.45593 0.45593014 1398 P63165;P63165-2 SUMO1 Small ubiquitin-related modifier 1 yes no 0 0 0 0 By MS/MS 4 0 1 1 28.275 28.319 3 0.029806 5693 20211116_3431_TMUAki_TMT10x_P_F4 52.482 12.437 366860 573020 4291.3 498900 377810 507360 341670 183580 268170 234330 376640 341620 534420 34568 514320 361620 509070 346180 204510 279880 226770 359970 1 1 1 1 1 1 1 1 1 1 1 366860 573020 4291.3 498900 377810 507360 341670 183580 268170 234330 376640 341620 534420 34568 514320 361620 509070 346180 204510 279880 226770 359970 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10575000 10575000 0 8400 1398 7828 44635 53938 53938 1 IADPEHDHTGFLTEYVATR Unmodified 2171.0283 0.028346601 826 P27361;P27361-2;P27361-3 MAPK3 Mitogen-activated protein kinase 3 yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 52.461 52.609 4 2.5318E-13 15448 20211116_3431_TMUAki_TMT10x_P_F4 139.88 122.67 6108500 10651000 82124 10988000 10624000 12384000 7890100 8104200 7224700 7833000 7788800 5688200 9939300 633360 11207000 10122000 12434000 8125600 8447700 7399000 7661300 7496100 3 3 2 3 3 3 3 3 3 3 3 4879700 8226900 82124 8789000 9438900 11300000 6750700 6554000 5847800 6285900 6254900 4544100 7678600 544950 8964100 8987800 11250000 6960100 6895100 6003100 6150200 6021300 2 2 2 2 2 2 2 2 2 2 2 1228900 2423700 0 2199200 1184900 1084100 1139400 1550200 1376900 1547100 1533900 1144100 2260700 88407 2242700 1134200 1183700 1165500 1552500 1395900 1511100 1474800 1 1 0 1 1 1 1 1 1 1 1 993950000 685010000 308940000 8401 826 7829 44636;44637;44638 53939;53940;53941 53939 3 IADQFLGAMYTLPR Oxidation (M) 1610.8127 0.81266351 265 O60341;O60341-2 KDM1A Lysine-specific histone demethylase 1A yes no 0 0 1 0 By MS/MS By MS/MS 8 0 4 2 2 71.374 71.319 2;3 5.6098E-05 22303 20211116_3447_TMUAki_TMT10x_S_F8 94.461 82.928 17790000 30068000 200800 26045000 19870000 28148000 20227000 20585000 19669000 20165000 23393000 16565000 28042000 1621200 26886000 19069000 28376000 20481000 21299000 20166000 19711000 22451000 7 7 5 7 7 7 7 7 7 7 7 8359200 13710000 30498 12602000 8459100 17032000 9855100 9853400 9409300 9735000 11014000 7783200 12788000 700690 13001000 8146500 16917000 9909700 10377000 9648800 9512600 10575000 3 3 2 3 3 3 3 3 3 3 3 9431000 16358000 170300 13443000 11411000 11116000 10372000 10732000 10259000 10430000 12379000 8782000 15253000 920550 13885000 10922000 11459000 10572000 10922000 10517000 10199000 11876000 4 4 3 4 4 4 4 4 4 4 4 2692800000 1805400000 887330000 8402 265 7830 44639;44640;44641;44642 53942;53943;53944;53945;53946;53947;53948 53945 211 7 IADRLGLELGK Unmodified 1183.6925 0.69247202 1279 P60891;P21108 PRPS1;PRPS1L1 Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 3 yes no 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 54.881 55.502 3 3.3691E-08 17516 20211116_3435_TMUAki_TMT10x_P_F7 143.42 88.072 11339000 17777000 26446 18044000 16876000 15927000 11612000 15469000 14762000 13897000 15566000 10558000 16589000 1013900 18357000 16049000 16346000 12152000 15703000 14909000 13637000 14991000 2 2 1 2 2 2 2 2 2 2 2 4303000 6618100 0 7106100 8187700 9800800 5268200 5604500 5770500 5286800 5691000 4006300 6177200 382780 7255200 7775500 9723900 5511900 5900600 5845700 5176400 5492300 1 1 0 1 1 1 1 1 1 1 1 7035800 11159000 26446 10938000 8688200 6126500 6344300 9864000 8991700 8610000 9875400 6551300 10412000 631110 11102000 8273400 6622000 6639800 9802900 9063000 8460700 9499100 1 1 1 1 1 1 1 1 1 1 1 1143000000 611210000 531760000 8403 1279 7831 44643;44644 53949;53950 53949 2 IADSIGCSTNNILFLTDVTR Unmodified 2209.1049 0.10488236 3126 Q9UHY7;Q9UHY7-2 ENOPH1 Enolase-phosphatase E1 yes no 0 0 0 0 By MS/MS By MS/MS 6.8 0.748 2 2 1 2 3 78.916 78.914 2;3 1.5192E-22 27848 20211116_3446_TMUAki_TMT10x_S_F7 155.37 132.35 10045000 15111000 108670 13753000 10136000 15017000 10639000 8861800 9064200 9880900 11149000 9353200 14095000 883150 14145000 9734500 15082000 10717000 9351200 9364200 9608200 10690000 3 3 2 3 3 3 3 3 3 3 3 7065200 10334000 108670 9543500 5757300 11901000 7330800 5867000 6307400 6941000 7865100 6579200 9639500 668710 9827000 5566600 11843000 7322000 6301800 6516800 6734700 7539000 2 2 2 2 2 2 2 2 2 2 2 2979700 4777400 0 4209000 4378400 3116100 3308700 2994900 2756800 2939900 3283500 2774000 4455700 214430 4317700 4167900 3239200 3395000 3049500 2847400 2873500 3151200 1 1 0 1 1 1 1 1 1 1 1 1773300000 710050000 1063200000 8404 3126 7832 44645;44646;44647;44648;44649 53951;53952;53953;53954 53953 4 IAEELPKEPQGIIACCNPVPPLVR Unmodified 2699.4139 0.41387768 1486 Q01780;Q01780-2 EXOSC10 Exosome component 10 yes no 0 0 0 1 By MS/MS 7 0 1 1 70.08 70.357 4 0.0027953 24145 20211116_3446_TMUAki_TMT10x_S_F7 57.829 49.121 3328700 5939500 79183 5978800 4446300 4131600 4534000 4315700 3750800 4076300 4423500 3099900 5542300 365420 6069000 4270400 4327100 4570200 4371500 3874000 3991000 4246400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3328700 5939500 79183 5978800 4446300 4131600 4534000 4315700 3750800 4076300 4423500 3099900 5542300 365420 6069000 4270400 4327100 4570200 4371500 3874000 3991000 4246400 1 1 1 1 1 1 1 1 1 1 1 670740000 0 670740000 8405 1486 7833 44650 53955 53955 1 IAEFAFEYAR Unmodified 1215.5924 0.59242362 1132 P50213;P50213-2 IDH3A Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.943 2 1 2 1 69.422 69.498 2 0.00016137 22857 20211116_3442_TMUAki_TMT10x_S_F4 91.085 63.343 4578300 6946800 0 6233400 4212200 7952700 4887700 4865600 4662400 4669300 5063600 4262800 6479500 369500 6435200 4055600 7926300 4915500 5097000 4767300 4568400 4872300 1 1 0 1 1 1 1 1 1 1 1 4578300 6946800 0 6233400 4212200 7952700 4887700 4865600 4662400 4669300 5063600 4262800 6479500 369500 6435200 4055600 7926300 4915500 5097000 4767300 4568400 4872300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 415470000 415470000 0 8406 1132 7834 44651;44652;44653 53956;53957;53958 53958 3 IAEFTTNLTEEEEK Unmodified 1652.7781 0.77811172 934 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 65.153 64.92 3 1.1684E-09 21716 20211116_3429_TMUAki_TMT10x_P_F2 108.97 94.713 7979100 12494000 0 14329000 9043600 11031000 8427400 7858300 7678900 7468100 9615600 7429100 11665000 644870 14440000 8653900 11370000 8557300 8138200 7913400 7309800 9215800 2 2 0 2 2 2 2 2 2 2 2 4362100 6362700 0 7486200 5460800 7667100 4813100 4118400 4122000 3796600 5375700 4061400 5941300 358610 7560500 5218600 7719800 4894600 4356800 4268200 3721200 5147000 1 1 0 1 1 1 1 1 1 1 1 3617000 6131600 0 6843300 3582800 3364200 3614300 3739900 3556900 3671500 4239800 3367700 5724100 286250 6879000 3435300 3650300 3662700 3781400 3645200 3588600 4068900 1 1 0 1 1 1 1 1 1 1 1 1748400000 673080000 1075300000 8407 934 7835 44654;44655;44656;44657;44658 53959;53960;53961 53960 3 IAELLENVTLIHKPVSLQPR Unmodified 2269.3158 0.31580184 1729 Q14694;Q14694-3;Q14694-2 USP10 Ubiquitin carboxyl-terminal hydrolase 10 yes no 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 77.361 77.345 4 2.2697E-25 25614 20211116_3431_TMUAki_TMT10x_P_F4 178.77 147.8 8237900 13033000 218110 12667000 8373300 11611000 8887700 7402100 7376400 8018600 9757300 7671700 12160000 854920 12932000 8052700 11799000 8941500 7756800 7654800 7806000 9338800 2 2 1 2 2 2 2 2 2 2 2 4782000 7520800 218110 7167000 4492800 8286100 5279200 4212100 4532400 4677200 5798700 4454200 7016400 595690 7353200 4340900 8280700 5290700 4502100 4688600 4548800 5554600 1 1 1 1 1 1 1 1 1 1 1 3455900 5512500 0 5499800 3880500 3324800 3608500 3190000 2844000 3341500 3958600 3217500 5143700 259240 5579100 3711800 3518300 3650800 3254700 2966200 3257200 3784200 1 1 0 1 1 1 1 1 1 1 1 3720700000 2299200000 1421500000 8408 1729 7836 44659;44660 53962;53963 53962 2 IAELLSPGSVDPLTR Unmodified 1566.8617 0.86172219 925 P35237 SERPINB6 Serpin B6 yes yes 0 0 0 0 By MS/MS 6 0 1 1 77.42 77.389 2 0.00047748 25044 20211116_3445_TMUAki_TMT10x_S_F6 77.593 58.848 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8409 925 7837 44661 53964 53964 1 IAEPSVCGR Unmodified 987.48076 0.48076468 911 P33991 MCM4 DNA replication licensing factor MCM4 yes yes 0 0 0 0 By MS/MS 4 0 1 1 34.37 34.395 2 6.3932E-05 8149 20211116_3431_TMUAki_TMT10x_P_F4 145.65 133.12 1148400 1805300 0 1792100 2149300 2218700 1454500 1077100 1292900 1081000 1478100 1069200 1684400 103370 1835600 2043000 2208300 1506700 1152900 1328900 1055600 1420100 1 1 0 1 1 1 1 1 1 1 1 1148400 1805300 0 1792100 2149300 2218700 1454500 1077100 1292900 1081000 1478100 1069200 1684400 103370 1835600 2043000 2208300 1506700 1152900 1328900 1055600 1420100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 56410000 56410000 0 8410 911 7838 44662 53965 53965 1 IAEVDASVVR Unmodified 1057.5768 0.57677356 891 P31930 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 44.994 44.945 2 2.6016E-08 13870 20211116_3430_TMUAki_TMT10x_P_F3 166.61 112.46 11727000 19304000 1711.2 22083000 14071000 18743000 10132000 12677000 12252000 11417000 14884000 10918000 18023000 926380 22282000 13388000 19164000 10549000 13158000 12465000 11202000 14276000 5 5 2 5 5 5 5 5 5 5 5 6493000 10393000 1184.3 12358000 9242500 14318000 5784900 6586000 5769600 6029200 8014600 6045300 9705000 532370 12498000 8772300 14292000 6048200 7069700 5949900 5911400 7661900 3 3 1 3 3 3 3 3 3 3 3 5233700 8911100 526.86 9724800 4829000 4424700 4347200 6091100 6482400 5387600 6869300 4872800 8318100 394010 9784200 4615900 4871900 4500800 6087900 6515000 5290800 6614600 2 2 1 2 2 2 2 2 2 2 2 1036100000 512550000 523580000 8411 891 7839 44663;44664;44665;44666;44667;44668 53966;53967;53968;53969;53970 53967 5 IAEVDCTAER Unmodified 1162.5288 0.52883709 2227 Q8NBS9;Q8NBS9-2 TXNDC5 Thioredoxin domain-containing protein 5 yes no 0 0 0 0 By MS/MS 2 0 1 1 24.163 24.229 2 0.0012943 5194 20211116_3440_TMUAki_TMT10x_S_F2 83.456 69.681 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8412 2227 7840 44669 53971 53971 1 IAFAITAIK Unmodified 946.58515 0.5851534 1345 P62269 RPS18 40S ribosomal protein S18 yes yes 0 0 0 0 By MS/MS By MS/MS 3.45 0.988 2 4 3 2 5 6 72.228 72.09 2;3 1.6189E-05 23324 20211116_3431_TMUAki_TMT10x_P_F4 157.86 113.41 87567000 144210000 779710 144500000 109000000 132980000 95124000 97486000 90109000 88690000 105820000 81535000 134570000 7781000 147220000 104180000 135380000 97058000 100650000 92447000 86982000 101590000 11 11 6 11 11 11 11 11 11 11 11 43939000 70106000 273650 69854000 62612000 95238000 54118000 48817000 44499000 43962000 51406000 40913000 65415000 4004300 71660000 59828000 94414000 55041000 51831000 45936000 43136000 49376000 5 5 3 5 5 5 5 5 5 5 5 43627000 74105000 506060 74649000 46385000 37741000 41006000 48669000 45610000 44728000 54411000 40622000 69150000 3776800 75564000 44349000 40970000 42017000 48814000 46511000 43846000 52216000 6 6 3 6 6 6 6 6 6 6 6 9216300000 5039200000 4177100000 8413 1345 7841 44670;44671;44672;44673;44674;44675;44676;44677;44678;44679;44680 53972;53973;53974;53975;53976;53977;53978;53979;53980;53981;53982;53983 53975 12 IAFGGHQR Unmodified 884.46168 0.46168422 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 0 By MS/MS 1 0 1 1 29.384 29.465 3 0.00096523 7740 20211116_3439_TMUAki_TMT10x_S_F1 107.67 97.259 112840 212370 0 174440 129170 123280 138590 105620 98783 114210 141810 105050 198020 7654.8 179870 123970 128350 138850 108540 103760 111190 135470 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 112840 212370 0 174440 129170 123280 138590 105620 98783 114210 141810 105050 198020 7654.8 179870 123970 128350 138850 108540 103760 111190 135470 1 1 0 1 1 1 1 1 1 1 1 4509400 0 4509400 8414 1723 7842 44681 53984 53984 1 IAFTEWIEPPKR Unmodified 1485.798 0.79799972 260 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 67.011 66.969 3 4.113E-06 20928 20211116_3428_TMUAki_TMT10x_P_F1 113.65 82.01 39951000 63562000 441470 63339000 48277000 64962000 50755000 39378000 36150000 39025000 48426000 37200000 59309000 3664000 64656000 46368000 65504000 50901000 41318000 37851000 38129000 46334000 8 8 6 8 8 8 8 8 8 8 8 31880000 49329000 273690 49504000 38593000 57438000 41561000 31957000 30027000 31821000 38535000 29684000 46030000 2815900 50609000 37084000 57452000 41645000 33774000 31354000 31084000 36910000 6 6 4 6 6 6 6 6 6 6 6 8070600 14233000 167770 13834000 9684600 7524500 9193500 7420800 6122700 7204200 9891000 7515800 13279000 848080 14047000 9283900 8052300 9255900 7543800 6496900 7045000 9424800 2 2 2 2 2 2 2 2 2 2 2 2272700000 1262500000 1010100000 8415 260 7843 44682;44683;44684;44685 53985;53986;53987;53988;53989;53990;53991;53992 53987 8 IAGEASR Unmodified 702.36605 0.3660525 290;528 Q93079;Q99877;P62807;P58876;O60814;Q5QNW6;Q99879;Q5QNW6-2;P57053;P33778;Q16778;P23527;P06899;Q6DRA6;Q6DN03 HIST1H2BH;HIST1H2BN;HIST1H2BC;HIST1H2BD;HIST1H2BK;HIST2H2BF;HIST1H2BM;H2BFS;HIST1H2BB;HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST2H2BD;HIST2H2BC Histone H2B type 1-H;Histone H2B type 1-N;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type 2-F;Histone H2B type 1-M;Histone H2B type F-S;Histone H2B type 1-B;Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Putative histone H2B type 2-D;Putative histone H2B type 2-C no no 0 0 0 0 By MS/MS By MS/MS 2.62 1.32 2 2 2 1 1 4 4 25.596 25.514 2 0.00025036 4684 20211116_3431_TMUAki_TMT10x_P_F4 196.94 84.278 4577800 7168800 0 5668700 4470900 5973800 5055600 3437300 3615100 3539500 4877300 4261700 6683600 297970 5893500 4296400 6009900 5052900 3625900 3785600 3452600 4665900 6 6 0 6 6 6 6 6 6 6 6 2837200 4407500 0 3449800 2566100 4240400 2899100 2095300 2246100 2128700 2964900 2641300 4109100 176940 3598800 2465300 4222800 2903000 2239600 2339100 2077600 2837900 4 4 0 4 4 4 4 4 4 4 4 1740600 2761300 0 2218900 1904700 1733500 2156500 1342100 1369000 1410800 1912400 1620400 2574500 121040 2294700 1831000 1787100 2149900 1386300 1446500 1375000 1828000 2 2 0 2 2 2 2 2 2 2 2 360840000 207140000 153700000 8416 290;528 7844 44686;44687;44688;44689;44690;44691;44692;44693 53993;53994;53995;53996;53997;53998 53995 6 IAGFDER Unmodified 806.39227 0.39226725 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS 3 0 1 1 39.383 39.436 2 0.056331 11676 20211116_3430_TMUAki_TMT10x_P_F3 65.672 16.082 1320200 1910000 15784 2285900 3060200 2634800 1535400 1363800 1428200 1302100 1726500 1229400 1783600 148530 2310700 2896900 2634100 1633900 1448900 1468200 1274300 1656200 1 1 1 1 1 1 1 1 1 1 1 1320200 1910000 15784 2285900 3060200 2634800 1535400 1363800 1428200 1302100 1726500 1229400 1783600 148530 2310700 2896900 2634100 1633900 1448900 1468200 1274300 1656200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25203000 25203000 0 8417 1433 7845 44694 53999 53999 1 IAGHPLAQNER Unmodified 1204.6313 0.63126874 3186 Q9UMY4;Q9UMY4-1;Q9UMY4-3 SNX12 Sorting nexin-12 yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 28.387 28.374 3 4.9026E-06 6086 20211116_3433_TMUAki_TMT10x_P_F5 115.39 81.644 753780 1281800 0 953440 1081900 1560000 946600 712780 882480 751940 1214400 701780 1194800 58772 1004900 1033400 1532700 965260 768640 912360 732770 1161200 2 2 0 2 2 2 2 2 2 2 2 753780 1281800 0 953440 1081900 1560000 946600 712780 882480 751940 1214400 701780 1194800 58772 1004900 1033400 1532700 965260 768640 912360 732770 1161200 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 45364000 45364000 0 8418 3186 7846 44695;44696 54000;54001 54001 2 IAGMDPVVHSALQEER Oxidation (M) 1766.8621 0.8621329 2967 Q9NVE7 PANK4 Pantothenate kinase 4 yes yes 0 0 1 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 40.218 39.931 3 0.011879 13017 20211116_3441_TMUAki_TMT10x_S_F3 48.053 34.147 521750 891940 15225 1070000 372930 419370 378660 903580 831460 646100 806140 485920 832940 55362 1069200 358650 478230 397810 886550 825150 641620 778440 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 521750 891940 15225 1070000 372930 419370 378660 903580 831460 646100 806140 485920 832940 55362 1069200 358650 478230 397810 886550 825150 641620 778440 1 1 1 1 1 1 1 1 1 1 1 43195000 0 43195000 8419 2967 7847 44697;44698 54002;54003 54003 3051 2 IAGPGLGSGVR Unmodified 982.55598 0.55597854 328 O75369;O75369-8;O75369-6;O75369-3;O75369-2;O75369-9;O75369-5;O75369-4;O75369-7 FLNB Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 38.136 38.52 2 8.7715E-07 8817 20211116_3447_TMUAki_TMT10x_S_F8 136.39 119.45 1571100 2419600 10669 2820900 3041500 2624100 1716400 1662200 1907400 1589500 2014600 1462900 2259300 157900 2846500 2883500 2663800 1816200 1736400 1935900 1555400 1940100 3 3 2 3 3 3 3 3 3 3 3 1074400 1648900 10669 1937800 2611200 2280200 1322000 1160500 1351900 1134500 1392400 1000500 1539700 120540 1961600 2471900 2276700 1409300 1235700 1375400 1109100 1341900 2 2 2 2 2 2 2 2 2 2 2 496680 770770 0 883030 430340 343860 394360 501680 555520 455020 622240 462430 719630 37354 884840 411540 387110 406890 500720 560460 446320 598190 1 1 0 1 1 1 1 1 1 1 1 59991000 39833000 20157000 8420 328 7848 44699;44700;44701 54004;54005;54006 54006 3 IAGQVAAANK Unmodified 941.52943 0.52942943 974 P39019 RPS19 40S ribosomal protein S19 yes yes 0 0 0 0 By MS/MS 5 0 1 1 35.818 35.994 2 9.0095E-10 7907 20211116_3444_TMUAki_TMT10x_S_F5 164.77 125.98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8421 974 7849 44702 54007 54007 1 IAGQVAAANKK Unmodified 1069.6244 0.62439245 974 P39019 RPS19 40S ribosomal protein S19 yes yes 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 34.678 34.567 3 6.8394E-05 7803 20211116_3428_TMUAki_TMT10x_P_F1 88.596 67.224 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8422 974 7850 44703;44704 54008;54009 54008 2 IAGYVTHLMK Oxidation (M) 1147.606 0.6059652 562 P08708 RPS17 40S ribosomal protein S17 yes yes 0 0 1 0 By MS/MS By MS/MS 4 2.91 2 2 2 3 4 5 47.798 47.638 3 7.309E-05 14635 20211116_3429_TMUAki_TMT10x_P_F2 118.18 72.459 6770400 11010000 128500 11534000 11416000 11235000 6862200 8854800 9449100 7907400 9265800 6304800 10276000 744190 11725000 10839000 11411000 7278800 9094700 9493100 7761800 8944100 4 4 3 4 4 4 4 4 4 4 4 3717700 5606700 40385 6011600 9047000 8532800 4355500 4461800 4744900 4058700 4826300 3461800 5233100 418560 6141900 8559000 8445700 4675400 4729800 4812900 3980600 4653200 2 2 1 2 2 2 2 2 2 2 2 3052700 5403700 88116 5522700 2368700 2702700 2506700 4393000 4704200 3848600 4439500 2843000 5042700 325630 5583500 2280100 2965200 2603400 4364900 4680200 3781200 4290800 2 2 2 2 2 2 2 2 2 2 2 999130000 562690000 436450000 8423 562 7851 44705;44706;44707;44708;44709;44710;44711;44712;44713 54010;54011;54012;54013;54014;54015;54016;54017 54011 529 8 IAGYVTHLMK Unmodified 1131.6111 0.61105057 562 P08708 RPS17 40S ribosomal protein S17 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 57.854 57.562 3 2.4775E-06 19219 20211116_3430_TMUAki_TMT10x_P_F3 105.98 67.183 6787000 11226000 328510 12794000 9008200 8141400 7302700 7254300 6660400 6770800 9005800 6321800 10481000 899960 12872000 8614500 8561000 7476700 7406000 6887200 6632600 8615000 3 3 3 3 3 3 3 3 3 3 3 2195600 3386400 6622.8 4166100 4931600 4352700 2845800 2026200 1920500 2043900 2693500 2044400 3162800 226520 4197800 4676600 4370400 2967100 2178000 2021700 1995500 2574400 1 1 1 1 1 1 1 1 1 1 1 4591400 7839100 321890 8628200 4076600 3788700 4456900 5228100 4739900 4726800 6312300 4277400 7317700 673440 8674100 3937900 4190500 4509700 5228000 4865500 4637100 6040500 2 2 2 2 2 2 2 2 2 2 2 960860000 420380000 540480000 8424 562 7851 44714;44715;44716;44717 54018;54019;54020;54021 54019 4 IAHFLDR Unmodified 870.47119 0.47118627 1272 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E yes yes 0 0 0 0 By MS/MS By MS/MS 6.6 0.49 2 3 2 3 40.349 40.825 2;3 0.0055564 11814 20211116_3435_TMUAki_TMT10x_P_F7 86.472 56.053 1557900 2614000 0 2597100 1446100 1435600 1599100 1557900 1684200 1534200 2042500 1450500 2439100 118120 2633300 1389900 1536900 1616600 1577100 1722400 1499300 1959300 4 4 0 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1557900 2614000 0 2597100 1446100 1435600 1599100 1557900 1684200 1534200 2042500 1450500 2439100 118120 2633300 1389900 1536900 1616600 1577100 1722400 1499300 1959300 4 4 0 4 4 4 4 4 4 4 4 164200000 0 164200000 8425 1272 7852 44718;44719;44720;44721;44722 54022;54023;54024;54025;54026;54027 54023 6 IAHIMGPPDR Oxidation (M) 1121.5652 0.56516301 2380 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 1 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 31.593 31.629 3 2.7425E-05 7303 20211116_3433_TMUAki_TMT10x_P_F5 128.03 104.68 1061400 1729100 19121 1766400 2292600 2337400 1353200 1048800 1159900 1161700 1448500 988360 1613500 122730 1807900 2175800 2317000 1415800 1134800 1198700 1129900 1388400 3 3 2 3 3 3 3 3 3 3 3 981990 1607600 19121 1649400 2220900 2265800 1264800 996700 1111700 1098900 1361500 914470 1500200 116590 1688900 2106700 2241700 1328200 1080500 1146600 1069000 1305600 2 2 2 2 2 2 2 2 2 2 2 79368 121440 0 117020 71678 71565 88443 52130 48117 62828 87002 73897 113300 6144.4 119010 69128 75273 87587 54303 52095 60921 82724 1 1 0 1 1 1 1 1 1 1 1 266450000 263440000 3001300 8426 2380 7853 44723;44724;44725 54028;54029;54030 54029 2716 3 IAHIMGPPDR Unmodified 1105.5702 0.57024839 2380 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 0 0 By MS/MS 5 0 1 1 35.895 36.07 3 0.060381 7911 20211116_3444_TMUAki_TMT10x_S_F5 38.885 16.737 562240 906810 51381 1096400 488310 585310 686520 673830 738510 609510 778590 523880 846860 93463 1097500 476310 629790 687610 678710 750460 597930 749840 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 562240 906810 51381 1096400 488310 585310 686520 673830 738510 609510 778590 523880 846860 93463 1097500 476310 629790 687610 678710 750460 597930 749840 1 1 1 1 1 1 1 1 1 1 1 16201000 0 16201000 8427 2380 7853 44726 54031 54031 1 IAHIMGPPDRCEHAAR Oxidation (M) 1845.8727 0.87265478 2380 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 1 1 By MS/MS 5 0 2 2 28.177 28.104 4;5 1.5343E-05 5926 20211116_3433_TMUAki_TMT10x_P_F5 96.993 88.816 726970 1005000 0 624720 544750 863460 423670 487250 479410 404640 606590 676690 936320 34118 667740 517760 856460 437800 511920 489790 398590 581210 2 2 0 2 2 2 2 2 2 2 2 726970 1005000 0 624720 544750 863460 423670 487250 479410 404640 606590 676690 936320 34118 667740 517760 856460 437800 511920 489790 398590 581210 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18481000 18481000 0 8428 2380 7854 44727;44728 54032;54033 54033 2716 2 IAHIPLYFVNAQFPR Unmodified 1784.9726 0.97261004 2928 Q9NRG9;Q9NRG9-2 AAAS Aladin yes no 0 0 0 0 By MS/MS 6 0 1 1 73.361 73.277 3 9.9508E-10 23421 20211116_3445_TMUAki_TMT10x_S_F6 128.36 112.98 1523700 2612100 11856 2459100 2079200 1475300 1697100 1658500 1469900 1408200 1726000 1418800 2436800 145150 2504700 1984700 1567700 1734400 1669500 1514400 1385600 1657100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1523700 2612100 11856 2459100 2079200 1475300 1697100 1658500 1469900 1408200 1726000 1418800 2436800 145150 2504700 1984700 1567700 1734400 1669500 1514400 1385600 1657100 1 1 1 1 1 1 1 1 1 1 1 362630000 0 362630000 8429 2928 7855 44729 54034 54034 1 IAILGFAFKK Unmodified 1106.6852 0.68520179 283 O60701;O60701-3;O60701-2 UGDH UDP-glucose 6-dehydrogenase yes no 0 0 0 1 By MS/MS 8 0 1 1 75.407 75.301 3 1.0199E-05 23914 20211116_3447_TMUAki_TMT10x_S_F8 104.01 78.355 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8430 283 7856 44730 54035 54035 1 IAILTCPFEPPKPK Unmodified 1609.8902 0.89018555 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 1 By MS/MS By MS/MS 2.68 0.924 3 5 10 4 16 6 77.535 77.367 3;4 2.4029E-09 21682 20211116_3442_TMUAki_TMT10x_S_F4 131.13 119.22 212390000 345670000 3539900 362040000 259740000 322710000 239100000 245580000 237060000 254400000 266120000 197770000 322610000 20766000 367600000 248700000 329450000 243540000 253840000 242290000 248100000 255820000 35 35 26 35 35 35 35 35 35 35 35 102010000 159380000 1513100 161890000 130720000 209430000 131510000 110790000 109590000 114680000 124110000 94986000 148720000 9819900 165690000 125430000 208210000 132680000 117740000 112970000 111850000 119280000 22 22 16 22 22 22 22 22 22 22 22 110380000 186300000 2026900 200150000 129020000 113280000 107580000 134790000 127470000 139710000 142010000 102790000 173890000 10946000 201910000 123270000 121240000 110860000 136110000 129320000 136250000 136540000 13 13 10 13 13 13 13 13 13 13 13 28581000000 14661000000 13920000000 8431 1079 7857 44731;44732;44733;44734;44735;44736;44737;44738;44739;44740;44741;44742;44743;44744;44745;44746;44747;44748;44749;44750;44751;44752 54036;54037;54038;54039;54040;54041;54042;54043;54044;54045;54046;54047;54048;54049;54050;54051;54052;54053;54054;54055;54056;54057;54058;54059;54060;54061;54062;54063;54064;54065;54066;54067;54068;54069;54070;54071;54072;54073;54074;54075 54075 40 IAIPGLAGAGNSVLLVSNLNPER Unmodified 2274.2696 0.26957993 818 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.77 1.16 6 22 36 7 2 42 31 59.865 59.807 2;3 5.7023E-146 27956 20211116_3430_TMUAki_TMT10x_P_F3 389.9 341.33 79061000 126290000 258880 117610000 84457000 109530000 96198000 71174000 69997000 77416000 95423000 73611000 117810000 5909400 120470000 81253000 111220000 96152000 74487000 73259000 75351000 91264000 72 72 32 72 72 72 72 72 72 72 72 43061000 66861000 174800 62073000 38827000 70371000 49520000 38202000 37162000 40539000 50999000 40092000 62371000 3340600 63787000 37488000 70455000 49289000 40535000 38837000 39497000 48768000 41 41 16 41 41 41 41 41 41 41 41 36000000 59425000 84075 55534000 45630000 39161000 46677000 32972000 32836000 36876000 44424000 33518000 55436000 2568800 56684000 43765000 40766000 46864000 33953000 34422000 35854000 42495000 31 31 16 31 31 31 31 31 31 31 31 151670000000 71354000000 80318000000 8432 818 7858 44753;44754;44755;44756;44757;44758;44759;44760;44761;44762;44763;44764;44765;44766;44767;44768;44769;44770;44771;44772;44773;44774;44775;44776;44777;44778;44779;44780;44781;44782;44783;44784;44785;44786;44787;44788;44789;44790;44791;44792;44793;44794;44795;44796;44797;44798;44799;44800;44801;44802;44803;44804;44805;44806;44807;44808;44809;44810;44811;44812;44813;44814;44815;44816;44817;44818;44819;44820;44821;44822;44823;44824;44825 54076;54077;54078;54079;54080;54081;54082;54083;54084;54085;54086;54087;54088;54089;54090;54091;54092;54093;54094;54095;54096;54097;54098;54099;54100;54101;54102;54103;54104;54105;54106;54107;54108;54109;54110;54111;54112;54113;54114;54115;54116;54117;54118;54119;54120;54121;54122;54123;54124;54125;54126;54127;54128;54129;54130;54131;54132;54133;54134;54135;54136;54137;54138;54139;54140;54141;54142;54143;54144;54145;54146;54147;54148;54149;54150;54151;54152;54153;54154;54155;54156;54157;54158;54159;54160;54161;54162;54163;54164;54165;54166 54093 91 IAIVNHDK Unmodified 908.50797 0.50796571 1303 P61221 ABCE1 ATP-binding cassette sub-family E member 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 33.156 33.334 3 0.0051662 8320 20211116_3433_TMUAki_TMT10x_P_F5 74.301 58.686 472390 755740 0 769170 514350 424530 479140 419550 356890 375380 605630 439830 705230 37924 778570 492180 453630 484070 425500 377250 368430 576530 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 472390 755740 0 769170 514350 424530 479140 419550 356890 375380 605630 439830 705230 37924 778570 492180 453630 484070 425500 377250 368430 576530 1 1 0 1 1 1 1 1 1 1 1 11367000 0 11367000 8433 1303 7859 44826;44827 54167;54168 54167 2 IAIWTTECENR Unmodified 1391.6503 0.65034921 519 P06730;P06730-2;P06730-3 EIF4E Eukaryotic translation initiation factor 4E yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 55.169 55.241 2 1.3688E-18 17012 20211116_3442_TMUAki_TMT10x_S_F4 223.32 195.24 1928300 3542400 3894.4 4087700 1838200 1316500 1620100 1748500 1650900 1690700 2686100 1795500 3307500 162240 4090200 1757300 1521800 1655700 1754300 1714900 1653600 2559100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1928300 3542400 3894.4 4087700 1838200 1316500 1620100 1748500 1650900 1690700 2686100 1795500 3307500 162240 4090200 1757300 1521800 1655700 1754300 1714900 1653600 2559100 1 1 1 1 1 1 1 1 1 1 1 484660000 0 484660000 8434 519 7860 44828;44829 54169 54169 1 IAIYELLFK Unmodified 1108.6532 0.65323296 1056 P46783 RPS10 40S ribosomal protein S10 yes yes 0 0 0 0 By MS/MS By MS/MS 3.29 1.59 2 4 19 3 1 2 18 13 67.583 67.537 2;3 1.5268E-06 26197 20211116_3447_TMUAki_TMT10x_S_F8 168.72 123.4 219530000 343700000 1621000 286680000 213930000 370420000 217790000 199110000 202310000 212820000 229640000 204410000 320500000 17149000 297740000 205240000 368340000 220240000 211500000 207470000 207290000 220680000 21 21 10 21 21 21 21 21 21 21 21 170020000 266510000 1551700 221140000 160360000 324490000 162100000 157000000 159130000 169930000 177180000 158320000 248510000 13738000 230350000 153870000 320430000 164250000 168470000 162660000 165430000 170360000 12 12 4 12 12 12 12 12 12 12 12 49505000 77194000 69297 65546000 53573000 45926000 55689000 42112000 43184000 42892000 52459000 46088000 71987000 3411000 67397000 51373000 47911000 55990000 43032000 44809000 41858000 50319000 9 9 6 9 9 9 9 9 9 9 9 48536000000 27144000000 21392000000 8435 1056 7861 44830;44831;44832;44833;44834;44835;44836;44837;44838;44839;44840;44841;44842;44843;44844;44845;44846;44847;44848;44849;44850;44851;44852;44853;44854;44855;44856;44857;44858;44859;44860 54170;54171;54172;54173;54174;54175;54176;54177;54178;54179;54180;54181;54182;54183;54184;54185;54186;54187;54188;54189;54190;54191;54192;54193;54194;54195;54196;54197;54198;54199;54200;54201;54202;54203 54203 34 IAKEEIFGPVQPLFK Unmodified 1714.9658 0.96579333 880 P30837 ALDH1B1 Aldehyde dehydrogenase X, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 2.8 2.64 2 2 1 3 2 74.727 74.679 3 0.00010329 23979 20211116_3428_TMUAki_TMT10x_P_F1 85.28 66.916 47612000 81604000 1024100 67387000 56458000 82059000 62588000 56258000 54496000 57304000 63611000 44338000 76092000 4949900 69970000 54346000 82111000 62915000 58532000 56118000 55923000 61081000 8 8 6 8 8 8 8 8 8 8 8 33075000 55162000 948480 47386000 35721000 63563000 44912000 37846000 36438000 38960000 42920000 30803000 51443000 3650600 49132000 34539000 63178000 44813000 39811000 37670000 38004000 41203000 6 6 5 6 6 6 6 6 6 6 6 14537000 26442000 75644 20002000 20737000 18496000 17676000 18411000 18058000 18344000 20690000 13535000 24649000 1299300 20837000 19808000 18933000 18102000 18722000 18447000 17919000 19878000 2 2 1 2 2 2 2 2 2 2 2 4717300000 3443100000 1274200000 8436 880 7862 44861;44862;44863;44864;44865 54204;54205;54206;54207;54208;54209;54210;54211;54212 54204 9 IAKPLSSLTPLIAAAK Unmodified 1592.9865 0.98652877 1602 Q13153 PAK1 Serine/threonine-protein kinase PAK 1 yes yes 0 0 0 1 By MS/MS 6 0 1 1 72.554 72.469 3 1.9973E-10 23097 20211116_3445_TMUAki_TMT10x_S_F6 124.25 111.89 5959700 10060000 22552 8891400 7156400 6500000 6494500 6867200 6264400 6834000 7732900 5549200 9382400 528920 9117500 6846400 6777500 6615200 6962600 6435100 6675800 7414200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5959700 10060000 22552 8891400 7156400 6500000 6494500 6867200 6264400 6834000 7732900 5549200 9382400 528920 9117500 6846400 6777500 6615200 6962600 6435100 6675800 7414200 2 2 1 2 2 2 2 2 2 2 2 364630000 0 364630000 8437 1602 7863 44866 54213;54214 54214 2 IALLEEARR Unmodified 1069.6244 0.62439245 682 P15311 EZR Ezrin yes yes 0 0 0 1 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 44.045 44.297 3 7.1846E-06 11446 20211116_3445_TMUAki_TMT10x_S_F6 158.76 109.77 3743300 5916400 27342 6451900 4992800 4642500 3739300 4578400 4755000 4196400 5188500 3485500 5522600 350130 6517100 4757300 4839600 3890000 4646800 4808300 4114200 4991700 4 4 3 4 4 4 4 4 4 4 4 1243000 1775900 10022 2000300 2661200 2558300 1447000 1454500 1600300 1400100 1589800 1157400 1657900 132260 2033200 2521800 2547000 1536000 1532900 1620900 1369700 1534000 1 1 1 1 1 1 1 1 1 1 1 2500300 4140500 17320 4451600 2331600 2084100 2292400 3123900 3154700 2796300 3598700 2328100 3864700 217880 4484000 2235500 2292600 2354000 3113900 3187400 2744500 3457800 3 3 2 3 3 3 3 3 3 3 3 516780000 172840000 343930000 8438 682 7864 44867;44868;44869 54215;54216;54217;54218 54216 4 IALLEEENSRPHTNETSL Unmodified 2052.0124 0.012362185 785 P23508;P23508-2 MCC Colorectal mutant cancer protein yes no 0 0 0 1 By MS/MS 3 0 1 1 51.813 51.445 3 0.00026406 17748 20211116_3441_TMUAki_TMT10x_S_F3 68.129 56.689 977800 1607300 0 1860600 751090 745680 682100 1352900 1357300 1127700 1322300 910410 1500700 76431 1863600 718350 842060 716390 1338100 1350000 1110600 1276700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 977800 1607300 0 1860600 751090 745680 682100 1352900 1357300 1127700 1322300 910410 1500700 76431 1863600 718350 842060 716390 1338100 1350000 1110600 1276700 1 1 0 1 1 1 1 1 1 1 1 64216000 0 64216000 8439 785 7865 44870 54219 54219 1 IALLPLLQAETDRR Unmodified 1607.9359 0.93589019 3048 Q9P0J0;Q9P0J0-2 NDUFA13 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 2.69 2 2 2 2 4 4 72.98 72.829 3 2.3195E-43 24849 20211116_3429_TMUAki_TMT10x_P_F2 265.34 239.28 14200000 23768000 36573 22017000 16061000 18616000 15704000 12528000 11599000 12035000 16541000 13221000 22172000 1134100 22533000 15387000 19038000 15821000 13030000 12155000 11774000 15804000 7 7 3 7 7 7 7 7 7 7 7 6725600 11165000 35109 10284000 5704900 10151000 6636600 5691400 5260700 5524300 7680300 6262400 10415000 573440 10552000 5495500 10250000 6640500 6006700 5497900 5402200 7334000 3 3 2 3 3 3 3 3 3 3 3 7474300 12603000 1464.6 11733000 10356000 8464900 9067400 6836900 6338400 6510400 8861100 6958500 11757000 560630 11982000 9891400 8788400 9180400 7023700 6657100 6371800 8469900 4 4 1 4 4 4 4 4 4 4 4 5214600000 2630800000 2583800000 8440 3048 7866 44871;44872;44873;44874;44875;44876;44877;44878 54220;54221;54222;54223;54224;54225;54226;54227;54228 54222 9 IALTDNALIAR Unmodified 1169.6768 0.67682195 716 P18124 RPL7 60S ribosomal protein L7 yes yes 0 0 0 0 By MS/MS By MS/MS 5.27 1.6 2 2 2 2 2 1 5 6 57.854 57.953 2 5.6097E-16 18547 20211116_3435_TMUAki_TMT10x_P_F7 210.93 162.59 169690000 286470000 2088400 306120000 233930000 283160000 184490000 215460000 188730000 198980000 227420000 158010000 267380000 16418000 310010000 223150000 288350000 189350000 221990000 193180000 195010000 218190000 17 17 8 16 17 17 16 17 16 17 17 91547000 149840000 691810 157220000 160020000 214250000 117090000 119320000 101640000 108640000 119410000 85242000 139850000 8899800 160180000 152380000 212610000 120020000 125790000 104700000 106540000 114640000 9 9 4 8 9 9 8 9 8 9 9 78145000 136630000 1396600 148890000 73905000 68906000 67409000 96145000 87090000 90339000 108010000 72769000 127540000 7518200 149830000 70772000 75742000 69325000 96205000 88481000 88469000 103550000 8 8 4 8 8 8 8 8 8 8 8 24717000000 12764000000 11952000000 8441 716 7867 44879;44880;44881;44882;44883;44884;44885;44886;44887;44888;44889 54229;54230;54231;54232;54233;54234;54235;54236;54237;54238;54239;54240;54241;54242;54243;54244;54245 54236 17 IALYGLGSIPDER Unmodified 1402.7456 0.7456298 1130 P49959;P49959-2;P49959-3 MRE11A Double-strand break repair protein MRE11A yes no 0 0 0 0 By MS/MS By MS/MS 6 0.756 2 3 2 3 4 69.457 69.392 2;3 2.0691E-19 23839 20211116_3446_TMUAki_TMT10x_S_F7 164.33 138.22 14736000 25393000 204550 23749000 16903000 22269000 16215000 15317000 14738000 15502000 18041000 13722000 23688000 1439100 24322000 16202000 22621000 16438000 15929000 15175000 15132000 17301000 4 4 3 4 4 4 4 4 4 4 4 7861900 13011000 88308 12200000 8308200 15023000 9481100 8195500 7950900 8136800 9200800 7320900 12138000 736760 12546000 8000900 14977000 9508400 8675400 8200000 7949200 8837000 2 2 1 2 2 2 2 2 2 2 2 6874400 12381000 116240 11548000 8595000 7245200 6733600 7121200 6787400 7364900 8840100 6401600 11550000 702360 11776000 8201500 7643600 6929200 7253900 6975500 7182900 8464200 2 2 2 2 2 2 2 2 2 2 2 1330000000 534180000 795780000 8442 1130 7868 44890;44891;44892;44893;44894;44895;44896 54246;54247;54248;54249;54250;54251;54252;54253;54254 54254 9 IANDNSLNHEYLPILGLAEFR Unmodified 2398.2281 0.22810904 703 P17174;P17174-2 GOT1 Aspartate aminotransferase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 7 0.707 1 2 1 2 2 78.34 78.346 3 1.751E-07 25094 20211116_3434_TMUAki_TMT10x_P_F6 91.337 44.984 11872000 18776000 214670 17254000 11799000 19883000 13105000 12519000 11960000 13230000 13787000 11055000 17515000 1093600 17749000 11353000 19928000 13189000 13121000 12282000 12892000 13243000 4 4 2 4 4 4 4 4 4 4 4 9006400 13627000 214670 13462000 8215500 16415000 9622400 8771200 8519000 9412100 10030000 8386900 12715000 873850 13789000 7921700 16368000 9652700 9322900 8768500 9165900 9628600 3 3 2 3 3 3 3 3 3 3 3 2865400 5149100 0 3792100 3583300 3468400 3482400 3747900 3441200 3818300 3756800 2667800 4799600 219720 3959500 3431500 3559600 3536400 3798600 3513800 3726300 3614300 1 1 0 1 1 1 1 1 1 1 1 3233300000 1429800000 1803500000 8443 703 7869 44897;44898;44899;44900 54255;54256;54257 54255 3 IANFKIEPPGLFR Unmodified 1500.8453 0.84528426 624 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 68.795 68.586 3 3.1622E-07 24822 20211116_3441_TMUAki_TMT10x_S_F3 120.53 97.806 51329000 85499000 393030 74700000 76685000 79509000 56554000 86392000 75708000 69898000 73299000 47794000 79740000 4754600 77041000 73032000 80856000 59011000 86996000 76097000 68945000 70783000 9 9 5 9 9 9 9 9 9 9 9 24846000 38301000 203000 34684000 25946000 52033000 29246000 40392000 36721000 32174000 33831000 23134000 35725000 2079100 35898000 24961000 51676000 29724000 41410000 36928000 31761000 32725000 5 5 2 5 5 5 5 5 5 5 5 26484000 47198000 190030 40016000 50738000 27475000 27309000 45999000 38987000 37724000 39468000 24660000 44014000 2675500 41143000 48071000 29180000 29287000 45586000 39169000 37184000 38059000 4 4 3 4 4 4 4 4 4 4 4 2215100000 1359300000 855730000 8444 624 7870 44901;44902;44903;44904 54258;54259;54260;54261;54262;54263;54264;54265;54266 54264 9 IANLQTDLSDGLR Unmodified 1414.7416 0.74160705 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 63.093 63.073 2 3.9604E-148 19728 20211116_3431_TMUAki_TMT10x_P_F4 418.12 340 25427000 40771000 306800 40549000 32190000 47426000 31336000 32838000 33485000 31574000 34892000 23676000 38043000 2339500 41485000 30853000 47562000 31896000 34086000 34021000 30889000 33615000 7 7 4 7 7 7 7 7 7 7 7 17252000 26650000 198350 26699000 24824000 39162000 23934000 21669000 22180000 20968000 23684000 16063000 24867000 1572000 27420000 23782000 38734000 24270000 22894000 22694000 20507000 22800000 5 5 2 5 5 5 5 5 5 5 5 8174700 14122000 108450 13850000 7366000 8263600 7401300 11169000 11305000 10606000 11208000 7612300 13176000 767480 14065000 7070300 8828300 7626500 11192000 11327000 10382000 10815000 2 2 2 2 2 2 2 2 2 2 2 4719000000 2916900000 1802100000 8445 755 7871 44905;44906;44907;44908;44909 54267;54268;54269;54270;54271;54272;54273 54270 7 IANPVEGSSGR Unmodified 1085.5465 0.54653606 1791 Q15365 PCBP1 Poly(rC)-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 33.069 33.163 2 1.9118E-11 7827 20211116_3431_TMUAki_TMT10x_P_F4 175.66 143.35 1631400 2920200 5309.6 2596600 2869800 2845800 1989300 1277700 1613100 1239500 1947900 1519000 2723700 157550 2675600 2729900 2848500 2052300 1377000 1669400 1212100 1868700 2 2 2 2 2 2 2 2 2 2 2 1535400 2749900 1914.3 2438800 2761800 2770200 1874300 1210800 1531000 1171500 1828300 1429600 2564800 146250 2514900 2625900 2766600 1937000 1308600 1583100 1145700 1754500 1 1 1 1 1 1 1 1 1 1 1 96004 170280 3395.2 157830 108020 75596 115020 66857 82059 68015 119630 89415 158840 11292 160660 103950 81889 115280 68451 86256 66379 114240 1 1 1 1 1 1 1 1 1 1 1 166890000 157020000 9863400 8446 1791 7872 44910;44911 54274;54275 54274 2 IANPVEGSTDR Unmodified 1157.5677 0.56766543 1792 Q15366;Q15366-6;Q15366-3;Q15366-2;Q15366-4;Q15366-5;Q15366-7;Q15366-8 PCBP2 Poly(rC)-binding protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 29.503 29.416 2 4.0192E-35 9454 20211116_3429_TMUAki_TMT10x_P_F2 246.5 204.85 1324800 2309600 504.51 2594500 1533000 1166100 1468000 1405400 1485500 1166600 1850200 1233400 2156200 96239 2605300 1467200 1281400 1493000 1409700 1523400 1149200 1773500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1324800 2309600 504.51 2594500 1533000 1166100 1468000 1405400 1485500 1166600 1850200 1233400 2156200 96239 2605300 1467200 1281400 1493000 1409700 1523400 1149200 1773500 2 2 1 2 2 2 2 2 2 2 2 345130000 0 345130000 8447 1792 7873 44912;44913;44914;44915 54276;54277;54278;54279 54277 4 IAPELYHK Unmodified 969.52837 0.5283668 1760 Q15046;Q15046-2 KARS Lysine--tRNA ligase yes no 0 0 0 0 By MS/MS 7 0 1 1 40.59 41.193 3 0.0087501 12245 20211116_3446_TMUAki_TMT10x_S_F7 68.735 38.925 1198400 1793500 93051 2061700 1237200 1064100 1494600 1003700 1012100 978450 1421000 1116500 1674600 186620 2069400 1198400 1144200 1487600 1022700 1065200 956650 1358100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1198400 1793500 93051 2061700 1237200 1064100 1494600 1003700 1012100 978450 1421000 1116500 1674600 186620 2069400 1198400 1144200 1487600 1022700 1065200 956650 1358100 2 2 2 2 2 2 2 2 2 2 2 18257000 0 18257000 8448 1760 7874 44916 54280;54281 54280 2 IAPETAVK Unmodified 827.47527 0.4752686 1983 Q6NUK1;Q6NUK1-2 SLC25A24 Calcium-binding mitochondrial carrier protein SCaMC-1 yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 38.298 38.362 2 0.015311 9946 20211116_3431_TMUAki_TMT10x_P_F4 77.072 27.746 1778700 2946800 0 3024000 3753300 3430200 2369400 2003300 2285600 1800500 2526900 1655800 2750000 137180 3085600 3561600 3437400 2473100 2102800 2337400 1766800 2430100 2 2 0 2 2 2 2 2 2 2 2 1446200 2420500 0 2510200 3387000 3171700 2016400 1740900 1979400 1550400 2114700 1346300 2258900 110610 2564300 3210800 3158200 2115800 1836500 2020100 1522100 2035800 1 1 0 1 1 1 1 1 1 1 1 332450 526310 0 513870 366280 258510 352980 262460 306200 250060 412150 309530 491060 26565 521290 350780 279190 357290 266280 317310 244730 394300 1 1 0 1 1 1 1 1 1 1 1 67603000 59521000 8081300 8449 1983 7875 44917;44918;44919 54282;54283 54282 2 IAPIGLR Unmodified 738.47521 0.47520902 3362 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 2.5 3 2 1 1 5 45.653 45.528 2 0.0013592 14317 20211116_3439_TMUAki_TMT10x_S_F1 165.75 47.924 + 13724000 20674000 27865 20588000 14366000 12197000 14455000 11055000 10147000 10641000 14980000 12778000 19290000 1144600 20883000 13777000 12917000 14524000 11285000 10683000 10409000 14301000 6 6 2 6 6 6 6 6 6 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13724000 20674000 27865 20588000 14366000 12197000 14455000 11055000 10147000 10641000 14980000 12778000 19290000 1144600 20883000 13777000 12917000 14524000 11285000 10683000 10409000 14301000 6 6 2 6 6 6 6 6 6 6 6 657910000 0 657910000 8450 3362 7876 44920;44921;44922;44923;44924;44925 54284;54285;54286;54287;54288 54286 5 IAPLEEGTLPFNLAEAQR Unmodified 1968.0316 0.031641065 3141 Q9UJS0;Q9UJS0-2 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes no 0 0 0 0 By MS/MS By MS/MS 4.6 1.02 2 2 4 2 6 4 77.816 77.801 2;3 6.5953E-59 26054 20211116_3433_TMUAki_TMT10x_P_F5 257.02 231.04 28906000 48956000 116120 43705000 31084000 46644000 37484000 25086000 23845000 27435000 33406000 26914000 45662000 2390500 45001000 29963000 46852000 37265000 26664000 25195000 26697000 31929000 11 11 5 11 11 11 11 11 11 11 11 19338000 32177000 101450 29467000 18935000 35567000 24912000 16586000 15600000 18400000 21682000 18005000 30014000 1580100 30344000 18305000 35430000 24668000 17876000 16494000 17895000 20727000 7 7 3 7 7 7 7 7 7 7 7 9568100 16779000 14674 14238000 12149000 11077000 12572000 8499900 8245100 9035000 11724000 8908700 15647000 810450 14657000 11658000 11421000 12597000 8788200 8700800 8802000 11202000 4 4 2 4 4 4 4 4 4 4 4 9669800000 5958700000 3711100000 8451 3141 7877 44926;44927;44928;44929;44930;44931;44932;44933;44934;44935 54289;54290;54291;54292;54293;54294;54295;54296;54297;54298;54299 54294 11 IAPPEAPVTGYMFGK Oxidation (M) 1592.7909 0.79086543 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 1 0 By MS/MS By MS/MS 7.11 0.737 2 4 3 5 4 63.106 63.449 2;3 6.1217E-10 21278 20211116_3446_TMUAki_TMT10x_S_F7 133.16 111.61 28593000 50657000 544270 46316000 38024000 57141000 34772000 56315000 54820000 51714000 46410000 26627000 47252000 3009300 47719000 36411000 57525000 36061000 57161000 54595000 50696000 45031000 9 9 8 9 9 9 9 9 9 9 9 14487000 24961000 205400 23115000 20089000 39870000 20280000 26510000 25578000 24272000 22293000 13490000 23285000 1470900 23962000 19280000 39283000 20725000 27561000 25673000 23798000 21607000 4 4 4 4 4 4 4 4 4 4 4 14106000 25696000 338870 23202000 17935000 17270000 14492000 29805000 29242000 27442000 24118000 13137000 23968000 1538400 23757000 17131000 18241000 15337000 29600000 28921000 26898000 23424000 5 5 4 5 5 5 5 5 5 5 5 9173700000 5135300000 4038400000 8452 586 7878 44936;44937;44938;44939;44940;44941;44942;44943;44944 54300;54301;54302;54303;54304;54305;54306;54307;54308;54309;54310 54307 558 11 IAPPEAPVTGYMFGK Unmodified 1576.796 0.79595081 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.71 2.37 1 2 4 3 4 72.045 72.069 2;3 7.0663E-24 23103 20211116_3436_TMUAki_TMT10x_P_F8 193.22 166.7 54775000 87457000 454900 91748000 63220000 61729000 64853000 29529000 22177000 33095000 57342000 51003000 81623000 4958700 92846000 60679000 64013000 64377000 31755000 25676000 32176000 54227000 10 10 5 10 10 10 10 10 10 10 10 30858000 46276000 94339 48591000 32691000 42316000 38010000 15112000 11537000 16964000 30865000 28732000 43189000 2624200 49314000 31482000 42885000 37457000 16794000 13582000 16492000 29176000 5 5 3 5 5 5 5 5 5 5 5 23917000 41181000 360560 43156000 30529000 19412000 26843000 14416000 10639000 16131000 26476000 22271000 38434000 2334500 43532000 29196000 21128000 26919000 14961000 12095000 15684000 25051000 5 5 2 5 5 5 5 5 5 5 5 6864900000 3197400000 3667500000 8453 586 7878 44945;44946;44947;44948;44949;44950;44951 54311;54312;54313;54314;54315;54316;54317;54318;54319;54320 54315 10 IAPPETPDSK Unmodified 1053.5342 0.53424004 3032 Q9NZI8;Q9NZI8-2 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes no 0 0 0 0 By MS/MS 4.33 0.471 2 1 3 39.49 39.651 2;3 1.8125E-06 10521 20211116_3442_TMUAki_TMT10x_S_F4 153.24 113.58 1428000 2430300 18119 2381500 1514200 1401100 1455800 1902800 2008900 1705700 2181600 1329800 2267500 136490 2418400 1451500 1499100 1496900 1903400 2025700 1674000 2099100 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1428000 2430300 18119 2381500 1514200 1401100 1455800 1902800 2008900 1705700 2181600 1329800 2267500 136490 2418400 1451500 1499100 1496900 1903400 2025700 1674000 2099100 3 3 3 3 3 3 3 3 3 3 3 108380000 0 108380000 8454 3032 7879 44952;44953;44954 54321;54322;54323 54322 3 IAPQYYDMSNFPQCEAKR Oxidation (M) 2232.9932 0.99322342 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 1 1 By MS/MS 7 0 1 1 48.42 49.044 3 1.7916E-08 14960 20211116_3435_TMUAki_TMT10x_P_F7 114.01 107.37 2637900 4441800 0 4712600 5418700 7662500 3845700 5255700 5426900 4132500 3971100 2455900 4145700 235380 4832600 5154700 7570000 4032100 5431500 5400100 4082300 3875800 2 2 0 2 2 2 2 2 2 2 2 2637900 4441800 0 4712600 5418700 7662500 3845700 5255700 5426900 4132500 3971100 2455900 4145700 235380 4832600 5154700 7570000 4032100 5431500 5400100 4082300 3875800 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 428300000 428300000 0 8455 196 7880 44955 54324;54325 54325 146 2 IAPRPASGPIRPIVR Unmodified 1598.9733 0.97327875 813 P26373;P26373-2 RPL13 60S ribosomal protein L13 yes no 0 0 0 2 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 28.824 28.878 3 0.00011598 4108 20211116_3444_TMUAki_TMT10x_S_F5 83.877 60.651 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8456 813 7881 44956;44957 54326;54327 54327 2 IAPTKNEQQLFYISQPGSSVVTSLSPGEAVK Unmodified 3274.7085 0.7085226 1130 P49959;P49959-2;P49959-3 MRE11A Double-strand break repair protein MRE11A yes no 0 0 0 1 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 74.23 74.158 4 7.8838E-11 23798 20211116_3428_TMUAki_TMT10x_P_F1 99.494 88.883 3744700 6727100 355370 6194800 4375900 7532700 5319300 4623500 5061100 4949500 5540800 3489300 6275100 650490 6377300 4241000 7525900 5338200 4857500 5177100 4820500 5330200 2 2 2 2 2 2 2 2 2 2 2 2405000 4333600 316680 4190700 2632900 6046000 3579500 3419600 3562800 3496400 3931500 2241600 4043200 497710 4313000 2567500 5985800 3580800 3611600 3638400 3411600 3781200 1 1 1 1 1 1 1 1 1 1 1 1339700 2393500 38693 2004200 1743000 1486600 1739700 1204000 1498300 1453100 1609300 1247700 2231900 152780 2064300 1673500 1540100 1757400 1245800 1538700 1408900 1549000 1 1 1 1 1 1 1 1 1 1 1 1698400000 1417700000 280680000 8457 1130 7882 44958;44959;44960 54328;54329 54328 2 IAPVFFR Unmodified 848.49086 0.49085908 1984 Q6NVY1;Q6NVY1-2 HIBCH 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial yes no 0 0 0 0 By MS/MS 4 0 1 1 61.497 61.372 2 0.0083403 19522 20211116_3442_TMUAki_TMT10x_S_F4 102.14 63.144 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8458 1984 7883 44961 54330 54330 1 IAQITGPPDR Unmodified 1066.5771 0.57710791 2408;2407 Q96AE4-2;Q96AE4 FUBP1 Far upstream element-binding protein 1 no no 0 0 0 0 By MS/MS By MS/MS 4.5 0.957 1 2 2 1 3 3 40.061 40.17 2 9.3378E-09 10944 20211116_3433_TMUAki_TMT10x_P_F5 139.38 123.72 9181800 14718000 38452 17087000 17715000 15203000 11687000 11040000 11412000 10751000 13699000 8548900 13742000 850800 17236000 16832000 15510000 12161000 11426000 11703000 10512000 13144000 6 6 4 6 6 6 6 6 6 6 6 5203000 7843100 21804 9352100 12945000 11544000 6803800 5815900 6255400 5803300 7462600 4844100 7324100 494340 9466800 12255000 11497000 7205500 6201900 6430600 5668300 7161500 4 4 2 4 4 4 4 4 4 4 4 3978800 6874500 16649 7734500 4769600 3658600 4882900 5223800 5156500 4947900 6236600 3704800 6417800 356460 7768800 4577200 4013800 4955500 5224000 5272200 4843700 5982800 2 2 2 2 2 2 2 2 2 2 2 837900000 505990000 331910000 8459 2408;2407 7884 44962;44963;44964;44965;44966;44967 54331;54332;54333;54334;54335;54336;54337;54338 54335 8 IAQLEEELEEEQGNTELINDR Unmodified 2471.1664 0.16635622 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS 1.6 0.611 7 7 1 12 3 60.618 60.54 2;3 1.2075E-67 25442 20211116_3428_TMUAki_TMT10x_P_F1 249.6 226.23 10891000 17475000 29498 17196000 12414000 16611000 13524000 10131000 9418800 11249000 12537000 10140000 16305000 528710 17553000 11927000 16813000 13533000 10661000 9872300 10940000 11997000 8 8 2 8 8 8 8 8 8 8 8 5116400 8305000 6824.1 8461800 5220400 10332000 6445900 5079200 5194400 5442800 6079900 4763300 7750000 341970 8649400 5031000 10292000 6435500 5440200 5370600 5300700 5837600 6 6 1 6 6 6 6 6 6 6 6 5775000 9169600 22674 8733900 7193100 6278700 7078100 5052000 4224400 5806000 6457100 5377200 8554500 186740 8904000 6895600 6520200 7097300 5221000 4501700 5639400 6159800 2 2 1 2 2 2 2 2 2 2 2 6230800000 3893900000 2336900000 8460 934 7885 44968;44969;44970;44971;44972;44973;44974;44975;44976;44977;44978;44979;44980;44981;44982 54339;54340;54341;54342;54343;54344;54345;54346;54347;54348;54349;54350;54351;54352;54353;54354;54355 54340 17 IAQLEEELEEEQSNMELLNDR Oxidation (M) 2547.1646 0.16464167 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 1 0 By MS/MS 1.8 0.748 2 2 1 5 40.506 40.368 2;3 5.5853E-05 4952 20211116_3429_TMUAki_TMT10x_P_F2 69.765 61.165 4429700 6979800 152880 5492200 5096200 12139000 5054400 4902000 4364500 6821200 5631900 4125700 6507300 516520 5807400 4894700 11793000 5107700 5406600 4515300 6582900 5393700 4 4 1 4 4 4 4 4 4 4 4 4429700 6979800 152880 5492200 5096200 12139000 5054400 4902000 4364500 6821200 5631900 4125700 6507300 516520 5807400 4894700 11793000 5107700 5406600 4515300 6582900 5393700 4 4 1 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1180900000 1180900000 0 8461 935 7886 44983;44984;44985;44986;44987 54356;54357;54358;54359;54360;54361 54360 1188 6 IAQLEEELEEEQSNMELLNDR Unmodified 2531.1697 0.16972704 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS 1 0 1 1 79.716 79.68 3 2.2287E-35 28102 20211116_3439_TMUAki_TMT10x_S_F1 193.85 174.26 4249500 7268000 82661 6193600 5174500 4653700 4658100 3842500 3785100 4407700 5584100 3956600 6777800 356940 6371300 4948000 4817700 4724800 3964700 3952800 4281500 5331100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4249500 7268000 82661 6193600 5174500 4653700 4658100 3842500 3785100 4407700 5584100 3956600 6777800 356940 6371300 4948000 4817700 4724800 3964700 3952800 4281500 5331100 2 2 1 2 2 2 2 2 2 2 2 655510000 0 655510000 8462 935 7886 44988 54362;54363 54362 2 IAQLEEQLDNETK Unmodified 1529.7573 0.7573167 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS 1 0 1 1 65.752 65.752 3 1.1321E-08 20450 20211116_3428_TMUAki_TMT10x_P_F1 117.07 103.04 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8463 934 7887 44989 54364 54364 1 IAQLICER Unmodified 1001.5328 0.53280025 908 P33316;P33316-2 DUT Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 51.409 51.552 2 0.0011833 14452 20211116_3445_TMUAki_TMT10x_S_F6 126.62 89.646 13477000 21963000 70339 23542000 26203000 25445000 15654000 19095000 18889000 15899000 19700000 12549000 20500000 1317600 23933000 24861000 25661000 16531000 19639000 19104000 15660000 18979000 3 3 1 3 3 3 3 3 3 3 3 8463700 13790000 70339 14982000 21039000 20959000 11352000 12007000 11911000 10406000 12339000 7881000 12872000 931080 15290000 19933000 20782000 12039000 12612000 12108000 10229000 11890000 2 2 1 2 2 2 2 2 2 2 2 5013800 8173400 0 8559500 5163800 4485700 4302100 7088000 6978800 5493000 7361300 4668000 7628100 386490 8643900 4927600 4879500 4491700 7027500 6996100 5430400 7089300 1 1 0 1 1 1 1 1 1 1 1 1199400000 715870000 483540000 8464 908 7888 44990;44991;44992;44993 54365;54366;54367;54368 54368 4 IAQPHHGVPYFR Unmodified 1420.7364 0.73640252 1800 Q15398;Q15398-3;Q15398-1 DLGAP5 Disks large-associated protein 5 yes no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 33.917 33.846 4 5.8581E-06 7474 20211116_3428_TMUAki_TMT10x_P_F1 107.11 90.088 598510 933690 5223.7 993370 1148900 1080100 776360 703650 765490 642500 825880 557310 871450 62197 1010500 1092500 1086500 806640 732590 781370 630020 794830 3 3 3 3 3 3 3 3 3 3 3 460580 696580 4358 731020 996770 952220 617550 529060 605000 489520 632030 428880 650110 49756 746640 946480 946900 645850 558090 616990 479720 608860 2 2 2 2 2 2 2 2 2 2 2 137930 237110 865.72 262350 152100 127840 158810 174580 160490 152980 193850 128430 221340 12440 263850 146060 139580 160790 174500 164380 150300 185970 1 1 1 1 1 1 1 1 1 1 1 124150000 104700000 19445000 8465 1800 7889 44994;44995;44996 54369;54370;54371 54369 3 IASDGLK Unmodified 702.3912 0.39120462 1305 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 38.56 38.645 2 0.01854 9963 20211116_3431_TMUAki_TMT10x_P_F4 89.55 20.635 5568600 9023700 37621 8481500 7429400 7457700 6058900 4652100 5433700 4629900 6778100 5185100 8418000 519310 8675500 7091300 7597600 6198100 4870900 5602900 4522700 6497000 3 3 2 3 3 3 3 3 3 3 3 3520300 5588500 13846 5208600 5246100 5859200 3895700 2724300 3253400 2836600 4101100 3277800 5213200 328930 5350200 4997100 5858400 4002300 2931500 3368000 2765700 3929900 1 1 1 1 1 1 1 1 1 1 1 2048300 3435200 23775 3272900 2183300 1598500 2163200 1927800 2180300 1793300 2677100 1907300 3204800 190380 3325300 2094100 1739100 2195800 1939400 2234900 1757000 2567100 2 2 1 2 2 2 2 2 2 2 2 244450000 174780000 69668000 8466 1305 7890 44997;44998;44999;45000 54372;54373;54374 54372 3 IASEASR Unmodified 732.37662 0.37661719 2613;2191 Q8N257;Q99880;Q96A08 HIST3H2BB;HIST1H2BL;HIST1H2BA Histone H2B type 3-B;Histone H2B type 1-L;Histone H2B type 1-A no no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 27.062 26.802 2 0.017454 6199 20211116_3429_TMUAki_TMT10x_P_F2 90.706 35.103 261530 390280 0 342030 245720 368070 248750 219610 207600 207380 293450 243480 363990 17098 352720 235400 370020 250890 230410 216050 203050 280420 2 2 0 2 2 2 2 2 2 2 2 156990 239410 0 209100 145640 264200 137560 138020 123430 128200 167900 146150 223290 9386.8 216280 139220 262910 139520 146410 127760 125610 160590 1 1 0 1 1 1 1 1 1 1 1 104540 150860 0 132930 100080 103870 111190 81591 84177 79185 125550 97328 140700 7711.1 136450 96181 107110 111370 84009 88286 77436 119830 1 1 0 1 1 1 1 1 1 1 1 5007200 2903300 2104000 8467 2191;2613 7891 45001;45002 54375;54376 54375 2 IASLEVENQSLR Unmodified 1357.7201 0.72014333 856;855 P29692;P29692-3;P29692-2 EEF1D Elongation factor 1-delta no no 0 0 0 0 By MS/MS By MS/MS 3.25 0.924 3 4 4 1 6 6 51.43 51.33 2;3 2.5158E-48 17640 20211116_3441_TMUAki_TMT10x_S_F3 304.24 186.71 62944000 98198000 991910 114830000 95104000 90460000 68888000 74720000 81296000 65650000 83541000 58612000 91692000 6287900 115600000 90571000 93304000 71631000 76493000 82241000 64491000 80520000 16 16 10 16 16 16 16 16 16 16 16 28740000 43538000 495680 50647000 61781000 62666000 36518000 34633000 37673000 30833000 36722000 26762000 40652000 3120400 51346000 58621000 62468000 38399000 36513000 38241000 30270000 35453000 9 9 5 9 9 9 9 9 9 9 9 34205000 54660000 496240 64180000 33323000 27794000 32370000 40087000 43623000 34817000 46820000 31851000 51039000 3167500 64257000 31950000 30835000 33232000 39980000 44000000 34221000 45066000 7 7 5 7 7 7 7 7 7 7 7 6128500000 3908200000 2220200000 8468 855;856 7892 45003;45004;45005;45006;45007;45008;45009;45010;45011;45012;45013;45014 54377;54378;54379;54380;54381;54382;54383;54384;54385;54386;54387;54388;54389;54390;54391;54392;54393 54388 17 IASLPQEVQDVSLLEK Unmodified 1767.9618 0.96183016 2905 Q9NQG5 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B yes yes 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 77.82 77.819 3 1.2032E-10 26044 20211116_3433_TMUAki_TMT10x_P_F5 126.63 108.93 16897000 29178000 7017.6 25119000 20218000 26757000 21126000 17781000 18403000 19754000 21365000 15732000 27211000 1306900 25937000 19400000 26955000 21297000 18591000 18946000 19211000 20518000 4 4 1 4 4 4 4 4 4 4 4 8900300 15353000 0 12605000 9653200 17616000 11833000 9615600 9795000 11084000 11451000 8286200 14315000 646900 13128000 9304100 17458000 11825000 10224000 10113000 10765000 10995000 2 2 0 2 2 2 2 2 2 2 2 7996800 13825000 7017.6 12514000 10565000 9140100 9293200 8165800 8607700 8669300 9913300 7445500 12896000 660000 12808000 10095000 9497600 9471700 8366700 8833200 8446100 9522600 2 2 1 2 2 2 2 2 2 2 2 4280000000 2307100000 1972900000 8469 2905 7893 45015;45016;45017;45018;45019 54394;54395;54396;54397 54394 4 IASPEGQDYLK Unmodified 1219.6085 0.60846762 3285 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog yes yes 0 0 0 0 By MS/MS 4 0 1 1 49.373 49.529 2 1.0465E-11 14194 20211116_3431_TMUAki_TMT10x_P_F4 177.57 138.03 1374700 1898500 1614.6 2645400 5688900 4047400 1945600 2348800 2817800 1703600 2392500 1280000 1774300 175900 2666900 5360800 3998600 2196200 2454500 2813300 1690400 2321200 1 1 1 1 1 1 1 1 1 1 1 1374700 1898500 1614.6 2645400 5688900 4047400 1945600 2348800 2817800 1703600 2392500 1280000 1774300 175900 2666900 5360800 3998600 2196200 2454500 2813300 1690400 2321200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 402890000 402890000 0 8470 3285 7894 45020 54398 54398 1 IASQVAALDLGYKPGVEAIR Unmodified 2070.1473 0.14733952 842 P28331;P28331-3;P28331-4;P28331-5;P28331-2 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 8 0 3 2 1 68.061 67.94 3 4.8335E-09 20900 20211116_3447_TMUAki_TMT10x_S_F8 111.67 94.594 8459000 13691000 75916 12435000 9159600 9927300 9286500 7938400 7210400 7353600 9820700 7876000 12770000 681610 12737000 8783900 10223000 9348800 8154100 7518800 7206000 9392900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8459000 13691000 75916 12435000 9159600 9927300 9286500 7938400 7210400 7353600 9820700 7876000 12770000 681610 12737000 8783900 10223000 9348800 8154100 7518800 7206000 9392900 2 2 1 2 2 2 2 2 2 2 2 558700000 0 558700000 8471 842 7895 45021;45022;45023 54399;54400;54401;54402 54401 4 IASWADLVNAHVVPGSGVVK Unmodified 2018.0949 0.094910023 618 P11172;P11172-2;P11172-3 UMPS Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase yes no 0 0 0 0 By MS/MS By matching 2.5 0.5 1 1 1 1 76.711 76.605 3 0.00011408 26344 20211116_3429_TMUAki_TMT10x_P_F2 63.447 46.369 4800800 8223600 49431 7053100 5271800 10081000 5618700 5535400 5728000 5856700 6651200 4470400 7669100 450680 7323300 5066500 9981100 5684500 5867100 5855200 5706700 6387600 1 1 1 1 1 1 1 1 1 1 1 4800800 8223600 49431 7053100 5271800 10081000 5618700 5535400 5728000 5856700 6651200 4470400 7669100 450680 7323300 5066500 9981100 5684500 5867100 5855200 5706700 6387600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1285300000 670490000 614840000 8472 618 7896 45024;45025 54403 54403 1 IATGHGQQGVTQVVLK Unmodified 1634.9104 0.91040372 1160 P51610;P51610-2;P51610-4 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 42.403 42.423 3 1.9306E-21 10991 20211116_3436_TMUAki_TMT10x_P_F8 169.92 136.08 4096800 7268600 32248 8634200 8634300 7950800 5204200 6626200 7335700 5455100 6748800 3814300 6787500 380600 8701600 8191300 8112100 5524200 6768800 7348700 5376000 6528500 7 7 2 7 7 7 7 7 7 7 7 2397000 3916400 2775 4680800 6987500 6172400 3572200 3675700 4219500 3065300 3647300 2231700 3657200 242910 4743500 6612800 6139900 3822100 3844900 4244000 3018800 3536100 4 4 1 4 4 4 4 4 4 4 4 1699800 3352300 29473 3953300 1646800 1778400 1632000 2950500 3116100 2389800 3101500 1582700 3130300 137690 3958100 1578500 1972200 1702100 2923900 3104700 2357100 2992300 3 3 1 3 3 3 3 3 3 3 3 419560000 254600000 164960000 8473 1160 7897 45026;45027;45028;45029 54404;54405;54406;54407;54408;54409;54410 54407 7 IATGQIAGVDKDGRPLQPHVR Unmodified 2227.2185 0.21854741 2861 Q9HC35;Q9HC35-2 EML4 Echinoderm microtubule-associated protein-like 4 yes no 0 0 0 2 By MS/MS By MS/MS 1 0 2 1 1 38.94 38.883 5 2.2806E-07 9517 20211116_3428_TMUAki_TMT10x_P_F1 93.92 77.978 1181700 2203600 4239.8 2586700 2322200 1881600 1354600 2045900 2121700 1740900 2117000 1100200 2057600 96838 2601300 2201200 1964000 1448400 2062700 2124700 1712800 2042300 2 2 1 2 2 2 2 2 2 2 2 569900 978570 4239.8 1090700 1631100 1388200 767560 829760 847860 763320 926410 530660 913530 66063 1109200 1542600 1383300 826210 869830 861820 748230 891240 1 1 1 1 1 1 1 1 1 1 1 611810 1225000 0 1496000 691060 493410 587070 1216100 1273900 977600 1190600 569490 1144100 30775 1492000 658640 580740 622190 1192900 1262900 964600 1151100 1 1 0 1 1 1 1 1 1 1 1 290690000 143670000 147020000 8474 2861 7898 45030;45031 54411;54412 54411 2 IATGSFLK Unmodified 835.48035 0.48035398 767 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 0 0 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 54.036 53.972 2 0.0012391 15752 20211116_3436_TMUAki_TMT10x_P_F8 125.58 60.546 25361000 41248000 473370 40899000 49286000 56277000 33467000 36360000 37865000 32288000 37036000 23617000 38488000 2782300 41978000 46882000 55936000 34911000 37851000 38299000 31702000 35753000 5 5 3 5 5 5 5 5 5 5 5 21183000 34469000 473370 33402000 45262000 52554000 29351000 31061000 32170000 27339000 31048000 19726000 32159000 2449700 34437000 43023000 51874000 30691000 32554000 32565000 26854000 29985000 4 4 3 4 4 4 4 4 4 4 4 4178000 6779400 0 7496700 4023900 3723500 4116700 5299100 5694300 4949400 5988400 3890000 6328600 332550 7540800 3859900 4061400 4219700 5297800 5734400 4848200 5767700 1 1 0 1 1 1 1 1 1 1 1 997740000 821270000 176460000 8475 767 7899 45032;45033;45034;45035;45036;45037 54413;54414;54415;54416;54417;54418;54419;54420 54417 8 IATGSFLKR Unmodified 991.58147 0.581465 767 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 0 1 By MS/MS 4 0 1 1 42.492 42.707 3 0.067238 11812 20211116_3442_TMUAki_TMT10x_S_F4 47.097 21.523 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8476 767 7900 45038 54421 54421 1 IATTTASAATAAAIGATPR Unmodified 1714.9214 0.92136233 1741 Q14980;Q14980-2;Q14980-5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.44 2.06 3 4 1 1 5 4 54.561 54.391 2;3 1.9696E-79 17352 20211116_3429_TMUAki_TMT10x_P_F2 299.76 265.01 27953000 48035000 590140 46311000 35669000 48199000 32673000 42393000 40424000 34908000 43054000 26031000 44816000 2883600 47395000 34156000 48855000 33538000 43171000 40879000 34401000 41451000 9 9 5 9 9 9 9 9 9 9 9 14802000 26759000 552390 24686000 22458000 34264000 20212000 22635000 21081000 17949000 23502000 13786000 24962000 1787600 25474000 21507000 34054000 20646000 23461000 21494000 17723000 22597000 5 5 2 5 5 5 5 5 5 5 5 13151000 21276000 37750 21625000 13211000 13935000 12461000 19757000 19343000 16959000 19552000 12245000 19854000 1096000 21921000 12649000 14801000 12892000 19710000 19384000 16679000 18855000 4 4 3 4 4 4 4 4 4 4 4 6850500000 4133900000 2716600000 8477 1741 7901 45039;45040;45041;45042;45043;45044;45045;45046;45047 54422;54423;54424;54425;54426;54427;54428;54429;54430;54431;54432 54424 11 IAVAAQNCYK Unmodified 1136.5648 0.56482866 1271 P60174;P60174-1 TPI1 Triosephosphate isomerase yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 4 4 4 4 41.595 41.926 2;3 9.1133E-15 12336 20211116_3446_TMUAki_TMT10x_S_F7 236.03 192.22 12605000 22434000 143460 23075000 19648000 18164000 13564000 14355000 14547000 13134000 17736000 11737000 20936000 1215100 23421000 18691000 18721000 14107000 14751000 14869000 12878000 17010000 11 11 7 11 11 11 11 11 11 11 11 5176400 9192300 101660 9417000 11455000 12577000 6973300 6035500 6264300 5572700 7424300 4820500 8578300 611830 9638300 10877000 12471000 7285700 6452800 6445100 5461700 7126000 4 4 4 4 4 4 4 4 4 4 4 7428200 13242000 41797 13658000 8193500 5586300 6590900 8319800 8282200 7561400 10311000 6916200 12358000 603300 13783000 7814500 6250200 6821600 8298300 8423700 7416100 9884100 7 7 3 7 7 7 7 7 7 7 7 975220000 608060000 367150000 8478 1271 7902 45048;45049;45050;45051;45052;45053;45054;45055 54433;54434;54435;54436;54437;54438;54439;54440;54441;54442;54443 54437 11 IAVAHNGELVNAAR Unmodified 1433.7739 0.77391024 1524 Q06203 PPAT Amidophosphoribosyltransferase yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.156 35.211 3 2.2278E-37 8816 20211116_3433_TMUAki_TMT10x_P_F5 239.38 207.39 857510 1379000 0 1427800 1803700 1440700 1077100 989090 1119600 787870 1280300 798290 1286900 67357 1453400 1710100 1456700 1131800 1022400 1142800 777770 1230100 2 2 0 2 2 2 2 2 2 2 2 586910 922680 0 978210 1542300 1222800 806410 673000 790610 513550 892710 546360 861160 48220 997670 1459400 1218300 855960 707230 808630 508130 858000 1 1 0 1 1 1 1 1 1 1 1 270590 456310 0 449620 261430 217870 270660 316090 328980 274330 387640 251920 425760 19136 455700 250700 238450 275860 315170 334210 269640 372120 1 1 0 1 1 1 1 1 1 1 1 400710000 331400000 69311000 8479 1524 7903 45056;45057;45058 54444;54445 54444 2 IAVALGENHSR Unmodified 1165.6204 0.62036971 387 O94829 IPO13 Importin-13 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 34.26 34.324 3 4.7516E-06 7138 20211116_3444_TMUAki_TMT10x_S_F5 115.65 98.705 1114200 1752100 4967.2 1756200 1681600 1753000 1311300 1097200 1062600 1028600 1400200 1037300 1634900 82961 1791200 1601900 1771300 1341800 1146600 1103900 1007400 1340200 2 2 1 2 2 2 2 2 2 2 2 727420 1148600 0 1164200 1252200 1405700 874390 733970 667290 660460 892550 677120 1071800 45670 1190200 1189800 1402000 900280 777950 695910 648060 854040 1 1 0 1 1 1 1 1 1 1 1 386770 603470 4967.2 591970 429320 347370 436910 363230 395310 368170 507610 360160 563060 37291 601060 412140 369320 441490 368660 407970 359370 486190 1 1 1 1 1 1 1 1 1 1 1 56531000 36421000 20109000 8480 387 7904 45059;45060 54446;54447 54447 2 IAVEAQNKYER Unmodified 1319.6834 0.68336389 641 P12270 TPR Nucleoprotein TPR yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.608 35.661 3 0.00023464 9002 20211116_3433_TMUAki_TMT10x_P_F5 90.975 75.086 3057100 5464800 16747 4953900 5140100 5012900 3933600 3125500 3595900 3153500 4173600 2846500 5097300 286370 5090700 4898500 5060700 4042600 3273900 3693500 3078700 4008300 2 2 1 2 2 2 2 2 2 2 2 2079000 3888300 0 3484300 4015900 4188200 2856100 2204800 2624100 2262400 2885100 1935600 3626700 187620 3593600 3820700 4178700 2950600 2343500 2689000 2207200 2775100 1 1 0 1 1 1 1 1 1 1 1 978140 1576500 16747 1469600 1124200 824640 1077400 920720 971810 891030 1288500 910870 1470600 98748 1497100 1077800 882030 1092100 930390 1004500 871450 1233200 1 1 1 1 1 1 1 1 1 1 1 187600000 137830000 49776000 8481 641 7905 45061;45062;45063 54448;54449 54448 2 IAVEPVNPSELPK Unmodified 1391.766 0.76603089 1757 Q15029;Q15029-2;Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 By MS/MS By MS/MS 4.57 0.495 3 4 4 3 60.075 60.216 2;3 3.9078E-18 18790 20211116_3433_TMUAki_TMT10x_P_F5 154.15 127.55 16345000 27230000 158960 28205000 19911000 20102000 17208000 19817000 19937000 17992000 22326000 15219000 25412000 1515500 28584000 19031000 20972000 17681000 20108000 20248000 17647000 21463000 3 3 2 3 3 3 3 3 3 3 3 4752600 7508500 28713 7740900 7393900 10657000 6555800 6106500 5601700 5017200 6148500 4425300 7007100 457770 7924200 7070200 10575000 6664100 6405700 5759900 4945000 5914300 1 1 1 1 1 1 1 1 1 1 1 11592000 19721000 130250 20464000 12518000 9444600 10653000 13710000 14336000 12975000 16178000 10794000 18405000 1057700 20660000 11961000 10397000 11017000 13702000 14488000 12702000 15549000 2 2 1 2 2 2 2 2 2 2 2 1123900000 513820000 610050000 8482 1757 7906 45064;45065;45066;45067;45068;45069;45070 54450;54451;54452;54453;54454;54455;54456;54457 54453 8 IAVGSDADLVIWDPDSVK Unmodified 1898.9626 0.96255845 1852 Q16555;Q16555-2 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 4.25 0.433 3 1 1 3 78.725 78.713 2;3 5.999E-17 26578 20211116_3442_TMUAki_TMT10x_S_F4 145.31 130.75 34750000 55456000 505750 52595000 36725000 47348000 44407000 23297000 18769000 27689000 37444000 32357000 51736000 3073800 53779000 35417000 48018000 43848000 25032000 20879000 26861000 35543000 5 5 2 5 5 5 5 5 5 5 5 20402000 30538000 238200 30026000 19517000 33352000 26032000 13900000 11384000 16843000 21162000 18996000 28493000 1657500 30718000 18876000 33335000 25611000 15202000 12569000 16328000 20112000 2 2 1 2 2 2 2 2 2 2 2 14348000 24918000 267560 22568000 17207000 13996000 18375000 9397800 7385700 10846000 16282000 13361000 23243000 1416300 23061000 16541000 14684000 18238000 9830400 8310200 10533000 15431000 3 3 1 3 3 3 3 3 3 3 3 3576000000 1323400000 2252600000 8483 1852 7907 45071;45072;45073;45074 54458;54459;54460;54461;54462 54462 5 IAVGSDADVVIWDPDKLK Unmodified 1940.0255 0.025493054 1691 Q14194-2;Q14194 CRMP1 Dihydropyrimidinase-related protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 75.633 75.644 3 2.0871E-08 24042 20211116_3444_TMUAki_TMT10x_S_F5 115.31 103.15 6258200 11571000 166700 10159000 8778800 6350700 7620600 5074400 4677700 5619800 7900600 5828200 10792000 709500 10406000 8398500 6675900 7699300 5240100 5001900 5466100 7521700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6258200 11571000 166700 10159000 8778800 6350700 7620600 5074400 4677700 5619800 7900600 5828200 10792000 709500 10406000 8398500 6675900 7699300 5240100 5001900 5466100 7521700 2 2 2 2 2 2 2 2 2 2 2 308810000 0 308810000 8484 1691 7908 45075;45076 54463;54464;54465 54464 3 IAVHPDYQGMGYGSR Oxidation (M) 1665.7569 0.75693954 2769 Q9H0A0;Q9H0A0-2 NAT10 N-acetyltransferase 10 yes no 0 0 1 0 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 35.08 35.181 3 0.00042462 8851 20211116_3433_TMUAki_TMT10x_P_F5 75.968 69.309 1318400 2078300 40806 2626300 2817300 2168900 1665900 1484300 1545200 1226700 1790700 1227900 1941400 168330 2633700 2674900 2222400 1746300 1535900 1585900 1208700 1719800 3 3 3 3 3 3 3 3 3 3 3 978190 1546300 24832 1926200 2477700 1859700 1310700 1111100 1128200 873160 1292200 910980 1444300 125240 1937200 2347900 1881800 1384900 1160300 1161600 862570 1241400 1 1 1 1 1 1 1 1 1 1 1 340210 532030 15975 700110 339560 309260 355230 373160 416910 353570 498500 316890 497070 43084 696510 326940 340600 361420 375590 424330 346120 478360 2 2 2 2 2 2 2 2 2 2 2 132670000 105170000 27499000 8485 2769 7909 45077;45078;45079 54466;54467;54468 54466 2938 3 IAVMELFR Unmodified 977.53682 0.536823 1847 Q16531;Q16531-2 DDB1 DNA damage-binding protein 1 yes no 0 0 0 0 By MS/MS 8 0 1 1 71.434 71.497 2 0.029533 22917 20211116_3436_TMUAki_TMT10x_P_F8 63.148 4.9803 5128000 7808400 0 6954800 4151200 8342500 5624400 4074100 3558700 4199200 5313700 4774600 7282900 395550 7176000 4016300 8317300 5564100 4361400 3773000 4096000 5071600 1 1 0 1 1 1 1 1 1 1 1 5128000 7808400 0 6954800 4151200 8342500 5624400 4074100 3558700 4199200 5313700 4774600 7282900 395550 7176000 4016300 8317300 5564100 4361400 3773000 4096000 5071600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 346400000 346400000 0 8486 1847 7910 45080 54469 54469 1 IAVMELFRPK Oxidation (M) 1218.6795 0.67946449 1847 Q16531;Q16531-2 DDB1 DNA damage-binding protein 1 yes no 0 0 1 1 By MS/MS By MS/MS 3 0 2 1 1 57.149 56.835 3 0.035677 18872 20211116_3430_TMUAki_TMT10x_P_F3 53.47 29.088 4027800 6652700 93406 7567100 7011900 7927000 5021100 5793600 5025700 5173600 6057400 3751000 6211100 462780 7660500 6679000 8005300 5197300 5979700 5149100 5078300 5811400 2 2 2 2 2 2 2 2 2 2 2 2316800 3788900 76767 4446400 5477500 6379100 3483800 3488700 3013000 3032500 3510500 2157800 3537900 307890 4518500 5206600 6314500 3623400 3679300 3103400 2980500 3371100 1 1 1 1 1 1 1 1 1 1 1 1711000 2863800 16639 3120800 1534500 1547800 1537300 2304900 2012700 2141100 2546900 1593200 2673200 154890 3142000 1472400 1690900 1573900 2300400 2045700 2097900 2440300 1 1 1 1 1 1 1 1 1 1 1 647350000 340550000 306800000 8487 1847 7911 45081;45082 54470;54471 54470 2456 2 IAVMELFRPK Unmodified 1202.6845 0.68454987 1847 Q16531;Q16531-2 DDB1 DNA damage-binding protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 68.164 68.229 3 1.2789E-08 21002 20211116_3444_TMUAki_TMT10x_S_F5 167.67 132.95 8256300 12374000 143470 16462000 8278500 7278200 8549100 2642600 2031500 3129000 7537800 7688500 11561000 818520 16368000 7953300 7876800 8455800 2935300 2547200 3035900 7100900 2 2 2 2 2 2 2 2 2 2 2 4043900 5839800 25793 7688500 4818900 4713900 4604500 1328000 971260 1614700 3532000 3765400 5456000 370160 7668500 4616800 4909600 4569300 1529700 1237900 1565200 3327900 1 1 1 1 1 1 1 1 1 1 1 4212400 6534000 117680 8773900 3459600 2564300 3944500 1314600 1060200 1514300 4005700 3923000 6105300 448360 8699800 3336600 2967300 3886500 1405600 1309300 1470700 3773000 1 1 1 1 1 1 1 1 1 1 1 677980000 279000000 398980000 8488 1847 7911 45083;45084 54472;54473 54473 2 IAVSKPSGPQPQADLQALLQSGAQVR Unmodified 2658.4453 0.44531246 2136 Q8IV08 PLD3 Phospholipase D3 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.739 3 5 3 6 5 73.933 73.724 3;4 1.0996E-38 23398 20211116_3442_TMUAki_TMT10x_S_F4 182.67 173.3 55273000 97814000 802570 86802000 71454000 92749000 71873000 63602000 59872000 65206000 75047000 51467000 91230000 5136900 89419000 68545000 93465000 72510000 66185000 61973000 63618000 71925000 24 24 14 24 24 24 24 24 24 24 24 29953000 49496000 368070 45840000 28503000 56077000 35913000 33085000 31194000 34036000 39121000 27891000 46171000 2669200 47176000 27530000 55980000 35894000 34828000 32223000 33202000 37493000 13 13 7 13 13 13 13 13 13 13 13 25320000 48318000 434500 40961000 42951000 36672000 35960000 30517000 28678000 31170000 35926000 23577000 45058000 2467700 42243000 41016000 37485000 36616000 31358000 29750000 30415000 34433000 11 11 7 11 11 11 11 11 11 11 11 15866000000 7460100000 8406100000 8489 2136 7912 45085;45086;45087;45088;45089;45090;45091;45092;45093;45094;45095 54474;54475;54476;54477;54478;54479;54480;54481;54482;54483;54484;54485;54486;54487;54488;54489;54490;54491;54492;54493;54494;54495;54496;54497 54496 24 IAVVGEGR Unmodified 799.4552 0.45520186 307 O75083 WDR1 WD repeat-containing protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.8 1.17 1 1 1 2 2 3 35.407 35.394 2 0.004299 8610 20211116_3431_TMUAki_TMT10x_P_F4 98.523 40.356 1998600 3310300 0 3314300 3095500 3104500 2414200 1888800 2102300 1808400 2533800 1860800 3088900 169060 3377700 2950200 3148300 2474800 1979300 2167700 1769500 2430900 2 2 0 2 2 2 2 2 2 2 2 1314100 2164000 0 2138200 2403300 2476200 1668500 1175300 1283100 1149600 1653300 1223600 2019100 122570 2188200 2285900 2472500 1718900 1259800 1335300 1123800 1583400 1 1 0 1 1 1 1 1 1 1 1 684470 1146300 0 1176100 692170 628270 745770 713510 819150 658790 880580 637220 1069700 46489 1189500 664360 675740 755930 719510 832320 645660 847560 1 1 0 1 1 1 1 1 1 1 1 121770000 80998000 40770000 8490 307 7913 45096;45097;45098;45099;45100 54498;54499;54500;54501 54498 4 IAVYHLQELASAELAK Unmodified 1754.9567 0.95668521 2517 Q96ME7;Q96ME7-2;Q96ME7-3 ZNF512 Zinc finger protein 512 yes no 0 0 0 0 By MS/MS 7 0 1 1 70.63 71.026 3 1.7299E-06 23993 20211116_3435_TMUAki_TMT10x_P_F7 94.461 73.998 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8491 2517 7914 45101 54502 54502 1 IAVYSCPFDGMITETK Oxidation (M) 1846.8481 0.84812231 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 1 0 By MS/MS By MS/MS 5.86 1.06 2 3 4 5 8 6 65.711 65.901 2;3 3.0688E-11 22290 20211116_3446_TMUAki_TMT10x_S_F7 140.07 124.45 59866000 97561000 496670 93039000 70793000 101240000 66012000 84866000 84774000 83167000 84020000 55741000 91018000 4523000 95357000 67762000 102260000 67789000 87062000 85395000 81295000 81074000 19 19 11 19 19 19 19 19 19 19 19 27570000 43741000 108950 43033000 32884000 63092000 32684000 38133000 38885000 37695000 38855000 25670000 40812000 1662100 44251000 31522000 62476000 33355000 40018000 39286000 36833000 37483000 10 10 5 10 10 10 10 10 10 10 10 32296000 53820000 387720 50006000 37909000 38146000 33328000 46733000 45889000 45472000 45165000 30071000 50205000 2860900 51107000 36240000 39785000 34434000 47044000 46109000 44462000 43592000 9 9 6 9 9 9 9 9 9 9 9 17994000000 10130000000 7864100000 8492 1146 7915 45102;45103;45104;45105;45106;45107;45108;45109;45110;45111;45112;45113;45114;45115 54503;54504;54505;54506;54507;54508;54509;54510;54511;54512;54513;54514;54515;54516;54517;54518;54519;54520;54521;54522;54523 54520 1514 21 IAVYSCPFDGMITETK Unmodified 1830.8532 0.85320769 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 By MS/MS By MS/MS 6.07 1.24 2 3 4 4 2 7 8 75.371 75.385 2;3 5.1657E-80 26247 20211116_3446_TMUAki_TMT10x_S_F7 318.64 294.35 110350000 174570000 995310 183150000 118700000 114090000 124730000 52049000 44341000 61738000 110630000 102750000 162920000 9496500 185210000 113980000 119090000 123720000 56340000 50980000 59898000 104670000 22 22 12 22 22 22 22 22 22 22 22 52651000 82698000 504330 85720000 52781000 71827000 62782000 28211000 24524000 31967000 52560000 49023000 77177000 4396500 87028000 50862000 73050000 61975000 30997000 27618000 31066000 49835000 12 12 6 12 12 12 12 12 12 12 12 57697000 91872000 490980 97432000 65916000 42260000 61952000 23838000 19818000 29771000 58072000 53723000 85747000 5100000 98179000 63117000 46041000 61743000 25344000 23362000 28832000 54836000 10 10 6 10 10 10 10 10 10 10 10 15737000000 6330100000 9406800000 8493 1146 7915 45116;45117;45118;45119;45120;45121;45122;45123;45124;45125;45126;45127;45128;45129;45130 54524;54525;54526;54527;54528;54529;54530;54531;54532;54533;54534;54535;54536;54537;54538;54539;54540;54541;54542;54543;54544;54545;54546;54547 54545 24 IAYFTLPK Unmodified 951.54295 0.54295423 2376 Q92900;Q92900-2 UPF1 Regulator of nonsense transcripts 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 68.978 68.754 2 0.0012795 23831 20211116_3430_TMUAki_TMT10x_P_F3 124.83 75.476 5390400 9146900 99064 8149100 7770400 12467000 6492100 6984800 7006900 6551900 7547500 5019700 8531300 572560 8448500 7424500 12311000 6668000 7365400 7125000 6416700 7264000 1 1 1 1 1 1 1 1 1 1 1 5390400 9146900 99064 8149100 7770400 12467000 6492100 6984800 7006900 6551900 7547500 5019700 8531300 572560 8448500 7424500 12311000 6668000 7365400 7125000 6416700 7264000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 378660000 260730000 117930000 8494 2376 7916 45131;45132;45133;45134 54548;54549;54550 54548 3 IAYQLAVEAESEQK Unmodified 1577.7937 0.7937022 936 P35606;P35606-2 COPB2 Coatomer subunit beta' yes no 0 0 0 0 By MS/MS By MS/MS 2 1 1 1 1 1 66.943 66.687 3 0.00026593 22828 20211116_3439_TMUAki_TMT10x_S_F1 73.834 60.697 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8495 936 7917 45135;45136 54551;54552 54552 2 IAYSDEVRNELLGDDGNSSENQR Unmodified 2580.1688 0.16881584 2410 Q96AJ9;Q96AJ9-1 VTI1A Vesicle transport through interaction with t-SNAREs homolog 1A yes no 0 0 0 1 By MS/MS 2 0 1 1 57.124 56.873 3 2.9675E-18 18392 20211116_3429_TMUAki_TMT10x_P_F2 138 130.72 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8496 2410 7918 45137 54553 54553 1 ICANHYITPMMELKPNAGSDR Oxidation (M) 2433.1239 0.12392002 1030 P43487;P43487-2 RANBP1 Ran-specific GTPase-activating protein yes no 0 0 1 1 By MS/MS By MS/MS 4.81 2.94 4 2 1 1 4 4 8 8 47.89 47.955 4 7.0167E-14 14836 20211116_3446_TMUAki_TMT10x_S_F7 130.09 118.45 105070000 183130000 978670 211120000 145160000 151470000 114260000 95471000 72697000 99230000 125040000 97837000 170990000 9632700 212500000 138440000 156730000 116230000 100010000 77633000 96758000 119010000 31 31 17 31 31 31 31 31 31 31 31 48935000 84636000 606150 99910000 93816000 110740000 75248000 42346000 32547000 45133000 54450000 45566000 79032000 5033600 101010000 89511000 110610000 75977000 46589000 35757000 43965000 51848000 12 12 7 12 12 12 12 12 12 12 12 56137000 98496000 372520 111210000 51345000 40727000 39012000 53125000 40150000 54096000 70595000 52270000 91955000 4599100 111500000 48932000 46116000 40251000 53418000 41876000 52793000 67158000 19 19 10 19 19 19 19 19 19 19 19 32966000000 20391000000 12575000000 8497 1030 7919 45138;45139;45140;45141;45142;45143;45144;45145;45146;45147;45148;45149;45150;45151;45152;45153 54554;54555;54556;54557;54558;54559;54560;54561;54562;54563;54564;54565;54566;54567;54568;54569;54570;54571;54572;54573;54574;54575;54576;54577;54578;54579;54580;54581;54582;54583 54575 1329;1330 30 ICANHYITPMMELKPNAGSDR Unmodified 2417.129 0.1290054 1030 P43487;P43487-2 RANBP1 Ran-specific GTPase-activating protein yes no 0 0 0 1 By MS/MS By MS/MS 4.67 3.35 2 1 3 2 4 54.696 54.605 3;4 5.0011E-14 15832 20211116_3428_TMUAki_TMT10x_P_F1 134.29 106.76 95406000 148600000 1152900 191350000 118300000 87663000 100490000 36130000 27668000 44826000 92474000 88838000 138820000 8955100 190640000 113030000 94543000 100610000 39595000 33634000 43421000 87201000 8 8 7 8 8 8 8 8 8 8 8 53279000 80877000 679140 108230000 80710000 63828000 66186000 17721000 12106000 22440000 49561000 49611000 75569000 5084500 107820000 77041000 66726000 66221000 20485000 16011000 21722000 46650000 4 4 3 4 4 4 4 4 4 4 4 42127000 67723000 473780 83119000 37593000 23835000 34308000 18409000 15562000 22385000 42914000 39228000 63250000 3870700 82821000 35992000 27817000 34392000 19110000 17622000 21699000 40551000 4 4 4 4 4 4 4 4 4 4 4 14134000000 7878900000 6255500000 8498 1030 7919 45154;45155;45156;45157;45158;45159 54584;54585;54586;54587;54588;54589;54590;54591;54592 54584 9 ICANHYITPMMELKPNAGSDR 2 Oxidation (M) 2449.1188 0.11883464 1030 P43487;P43487-2 RANBP1 Ran-specific GTPase-activating protein yes no 0 0 2 1 By MS/MS By MS/MS 5.89 2.28 2 1 1 2 3 5 4 40.882 41.04 4 5.8742E-11 10232 20211116_3436_TMUAki_TMT10x_P_F8 118.96 111.42 14779000 27354000 356760 28143000 36714000 52177000 21668000 37860000 37635000 29891000 27942000 13762000 25527000 1707300 29014000 34838000 51350000 23260000 38977000 37245000 29522000 27255000 19 19 9 19 19 19 19 19 19 19 19 12240000 22677000 345820 22893000 34501000 50097000 19962000 33657000 33496000 26265000 23914000 11398000 21161000 1547300 23746000 32730000 48988000 21427000 34829000 33144000 25957000 23366000 11 11 7 11 11 11 11 11 11 11 11 2539200 4676800 10941 5250600 2212500 2079800 1706700 4202100 4139600 3625900 4028000 2364100 4366100 159930 5268500 2107600 2362000 1833000 4148000 4100900 3565000 3889100 8 8 2 8 8 8 8 8 8 8 8 8622400000 7804800000 817620000 8499 1030 7919 45160;45161;45162;45163;45164;45165;45166;45167;45168 54593;54594;54595;54596;54597;54598;54599;54600;54601;54602;54603;54604;54605;54606;54607;54608;54609;54610;54611 54603 1329;1330 19 ICAVGITK Unmodified 860.47897 0.47897377 1234 P55060;P55060-3;P55060-4 CSE1L Exportin-2 yes no 0 0 0 0 By MS/MS 8 0 1 1 47.29 47.204 2 0.0018312 12502 20211116_3447_TMUAki_TMT10x_S_F8 109.86 62.796 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8500 1234 7920 45169 54612 54612 1 ICDDELILIK Unmodified 1230.653 0.65297497 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 1.4 2 2 4 4 2 1 8 7 73.044 72.958 2;3 1.8815E-09 24896 20211116_3429_TMUAki_TMT10x_P_F2 182.98 113.6 134240000 216020000 939510 228600000 172010000 199540000 148410000 154500000 138330000 149920000 173830000 124980000 201620000 11111000 231890000 164300000 204060000 151460000 159220000 142430000 146610000 166590000 16 16 7 16 16 16 16 16 16 16 16 69468000 106570000 82795 113680000 90576000 135540000 81632000 76021000 68939000 75045000 85416000 64676000 99464000 5368800 115800000 86579000 135390000 82877000 80267000 71274000 73333000 81888000 7 7 3 7 7 7 7 7 7 7 7 64769000 109460000 856720 114930000 81433000 63998000 66775000 78483000 69394000 74873000 88416000 60307000 102160000 5742200 116100000 77722000 68664000 68580000 78957000 71156000 73274000 84703000 9 9 4 9 9 9 9 9 9 9 9 22994000000 12859000000 10136000000 8501 712 7921 45170;45171;45172;45173;45174;45175;45176;45177;45178;45179;45180;45181;45182;45183;45184 54613;54614;54615;54616;54617;54618;54619;54620;54621;54622;54623;54624;54625;54626;54627;54628;54629;54630;54631 54615 19 ICDGVQFGAGIR Unmodified 1291.6343 0.63430521 3310 Q9Y512 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 53.034 53.132 2 4.5148E-28 15137 20211116_3445_TMUAki_TMT10x_S_F6 230.66 203.41 2899700 4396000 1366.7 5193600 5478900 6249000 3718500 4120000 3684700 3285700 3803900 2699900 4105000 277800 5257800 5209200 6253100 3862900 4271400 3754300 3243300 3665800 1 1 1 1 1 1 1 1 1 1 1 2899700 4396000 1366.7 5193600 5478900 6249000 3718500 4120000 3684700 3285700 3803900 2699900 4105000 277800 5257800 5209200 6253100 3862900 4271400 3754300 3243300 3665800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 305280000 305280000 0 8502 3310 7922 45185;45186 54632;54633 54633 2 ICDQISDAVLDAHLQQDPDAK Unmodified 2351.1063 0.10633893 885 P31153 MAT2A S-adenosylmethionine synthase isoform type-2 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 65.889 65.429 3;4 5.2804E-27 23432 20211116_3441_TMUAki_TMT10x_S_F3 176.48 155.74 9828100 17985000 263350 20350000 10553000 8604000 11669000 10239000 9501900 10888000 12498000 9152900 16791000 1070400 20418000 10163000 9526500 11711000 10347000 9867700 10607000 11963000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9828100 17985000 263350 20350000 10553000 8604000 11669000 10239000 9501900 10888000 12498000 9152900 16791000 1070400 20418000 10163000 9526500 11711000 10347000 9867700 10607000 11963000 3 3 3 3 3 3 3 3 3 3 3 995090000 0 995090000 8503 885 7923 45187;45188;45189 54634;54635;54636;54637 54637 4 ICDVYNAVMDVVKK Unmodified 1652.8266 0.82659901 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 0 1 By MS/MS By matching 3 0 2 1 1 78.721 78.643 3 3.346E-05 27698 20211116_3430_TMUAki_TMT10x_P_F3 99.451 80.618 6909600 9930000 0 11934000 6641900 9700600 7570900 3995700 3121400 4586000 6353400 6433500 9273200 561500 12000000 6391400 9891900 7493200 4368200 3484800 4454600 6028800 1 1 0 1 1 1 1 1 1 1 1 6909600 9930000 0 11934000 6641900 9700600 7570900 3995700 3121400 4586000 6353400 6433500 9273200 561500 12000000 6391400 9891900 7493200 4368200 3484800 4454600 6028800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 912070000 455240000 456830000 8504 3317 7924 45190;45191 54638 54638 1 ICDVYNAVMDVVKK Oxidation (M) 1668.8215 0.82151363 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 1 1 By MS/MS 8 0 2 2 74.413 74.436 3 0.0011056 23623 20211116_3436_TMUAki_TMT10x_P_F8 69.716 57.55 9037200 14742000 164620 13909000 10072000 21863000 11193000 12958000 12543000 12408000 12113000 8415700 13753000 917160 14367000 9695600 21582000 11337000 13608000 12686000 12141000 11698000 3 3 3 3 3 3 3 3 3 3 3 9037200 14742000 164620 13909000 10072000 21863000 11193000 12958000 12543000 12408000 12113000 8415700 13753000 917160 14367000 9695600 21582000 11337000 13608000 12686000 12141000 11698000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1295400000 1295400000 0 8505 3317 7924 45192;45193 54639;54640;54641 54639 3274 3 ICDYLFNVSDSSALNLAK Unmodified 2028.9826 0.98264196 1242 P55265;P55265-5;P55265-4;P55265-3;P55265-2 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 79.215 79.229 3 5.8848E-12 25469 20211116_3447_TMUAki_TMT10x_S_F8 122.5 106.56 23620000 38730000 1531500 36144000 26100000 37892000 30415000 26160000 25074000 29252000 27910000 22004000 36130000 3420200 37081000 25227000 38230000 30460000 27283000 25842000 28442000 26836000 4 4 4 4 4 4 4 4 4 4 4 12940000 19322000 926120 18534000 12573000 25194000 15005000 14345000 13234000 15859000 14486000 12055000 18027000 1930800 19063000 12173000 25012000 15039000 15178000 13585000 15426000 13935000 2 2 2 2 2 2 2 2 2 2 2 10680000 19408000 605340 17610000 13527000 12697000 15409000 11815000 11839000 13393000 13425000 9948400 18103000 1489500 18018000 13054000 13218000 15421000 12105000 12257000 13016000 12901000 2 2 2 2 2 2 2 2 2 2 2 5807600000 2928500000 2879100000 8506 1242 7925 45194;45195;45196;45197 54642;54643;54644;54645 54644 4 ICEADRVAIK Unmodified 1173.6176 0.61759251 1234 P55060;P55060-3;P55060-4;P55060-2 CSE1L Exportin-2 yes no 0 0 0 1 By MS/MS 5 0 1 1 38.757 38.889 3 0.0005966 9075 20211116_3444_TMUAki_TMT10x_S_F5 94.465 56.162 1209000 1854100 0 2243200 1177500 805690 1114900 1137300 1276400 936670 1415900 1125500 1731600 76359 2239500 1126000 916900 1139200 1133600 1296400 923070 1361600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1209000 1854100 0 2243200 1177500 805690 1114900 1137300 1276400 936670 1415900 1125500 1731600 76359 2239500 1126000 916900 1139200 1133600 1296400 923070 1361600 1 1 0 1 1 1 1 1 1 1 1 111900000 0 111900000 8507 1234 7926 45198 54646 54646 1 ICFQGDEGACPTR Unmodified 1509.634 0.63404721 2951 Q9NUD5 ZCCHC3 Zinc finger CCHC domain-containing protein 3 yes yes 0 0 0 0 By MS/MS 3 0 1 1 41.825 41.88 2 1.8258E-22 12665 20211116_3430_TMUAki_TMT10x_P_F3 181.87 165.64 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8508 2951 7927 45199 54647 54647 1 ICGDIHGQYTDLLR Unmodified 1659.8039 0.80388973 1334 P62140 PPP1CB Serine/threonine-protein phosphatase PP1-beta catalytic subunit yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 53.395 53.555 3 2.7019E-24 15280 20211116_3445_TMUAki_TMT10x_S_F6 177.84 137.29 8189700 13686000 95207 14873000 12461000 14471000 9311900 10390000 9845700 10162000 10720000 7625900 12775000 801470 15083000 11873000 14676000 9626700 10763000 10024000 9934100 10314000 3 3 2 3 3 3 3 3 3 3 3 5242000 8653400 95207 9337900 9409000 12022000 6824600 6387100 6075600 6452800 6563200 4881600 8077100 581690 9518000 8962500 11955000 7034400 6780300 6231000 6299500 6316200 2 2 2 2 2 2 2 2 2 2 2 2947700 5032500 0 5534800 3051800 2449800 2487300 4002700 3770000 3709200 4156700 2744400 4697700 219780 5564800 2910400 2720900 2592200 3982500 3792900 3634700 3997900 1 1 0 1 1 1 1 1 1 1 1 1373900000 1014100000 359780000 8509 1334 7928 45200;45201;45202;45203 54648;54649;54650;54651 54651 4 ICGDIHGQYYDLLR Unmodified 1721.8195 0.8195398 1333;957 P36873;P36873-2;P62136;P62136-2 PPP1CC;PPP1CA Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit no no 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 57.206 57.491 3 3.2477E-14 16877 20211116_3445_TMUAki_TMT10x_S_F6 152 128.17 45274000 72167000 36331 74678000 75508000 73271000 50227000 52712000 50834000 48714000 57326000 42150000 67349000 3708700 75986000 71735000 74269000 52288000 54511000 51919000 47741000 55099000 6 6 1 6 6 6 6 6 6 6 6 26205000 40516000 0 41447000 55129000 55430000 32312000 29389000 29405000 26489000 30875000 24397000 37809000 2239400 42426000 52265000 55020000 33879000 31108000 30094000 25990000 29738000 3 3 0 3 3 3 3 3 3 3 3 19068000 31651000 36331 33231000 20379000 17841000 17915000 23323000 21429000 22226000 26451000 17753000 29540000 1469200 33560000 19470000 19248000 18410000 23403000 21825000 21752000 25361000 3 3 1 3 3 3 3 3 3 3 3 5023300000 2559500000 2463800000 8510 957;1333 7929 45204;45205;45206;45207;45208;45209 54652;54653;54654;54655;54656;54657 54656 6 ICHQIEYYFGDFNLPR Unmodified 2070.9622 0.96218129 509 P05455 SSB Lupus La protein yes yes 0 0 0 0 By MS/MS By MS/MS 6.58 1.86 2 2 5 7 10 13 13 88.415 88.396 3 3.6543E-15 26399 20211116_3435_TMUAki_TMT10x_P_F7 147.12 132.2 31029000 53140000 476200 47541000 38086000 55328000 41085000 38415000 34691000 37946000 40506000 28893000 49565000 2903300 49012000 36610000 55504000 41319000 39897000 35779000 37080000 38894000 35 35 17 35 35 35 35 35 35 35 35 17265000 28377000 345920 25011000 16798000 36119000 22063000 20651000 18589000 20840000 22051000 16077000 26466000 1661800 25920000 16255000 35763000 21997000 21783000 19186000 20346000 21165000 21 21 10 21 21 21 21 21 21 21 21 13764000 24763000 130270 22530000 21288000 19208000 19021000 17763000 16102000 17106000 18454000 12816000 23098000 1241500 23092000 20355000 19741000 19322000 18114000 16592000 16734000 17729000 14 14 7 14 14 14 14 14 14 14 14 4668200000 2579800000 2088400000 8511 509 7930 45210;45211;45212;45213;45214;45215;45216;45217;45218;45219;45220;45221;45222;45223;45224;45225;45226;45227;45228;45229;45230;45231;45232;45233;45234;45235 54658;54659;54660;54661;54662;54663;54664;54665;54666;54667;54668;54669;54670;54671;54672;54673;54674;54675;54676;54677;54678;54679;54680;54681;54682;54683;54684;54685;54686;54687;54688;54689;54690;54691;54692;54693;54694;54695 54664 38 ICLDILK Unmodified 873.49937 0.49937486 1294 P61088 UBE2N Ubiquitin-conjugating enzyme E2 N yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.707 1 2 1 2 2 68.335 68.734 2 0.0026043 22997 20211116_3435_TMUAki_TMT10x_P_F7 123.96 37.845 27700000 42376000 265810 50476000 60501000 60421000 37595000 32930000 29231000 33004000 40073000 25791000 39572000 2679800 51070000 57431000 60322000 39073000 34870000 30488000 32230000 38321000 3 3 1 3 3 3 3 3 3 3 3 19543000 29214000 265810 36057000 52978000 53345000 30290000 23019000 20456000 23292000 28150000 18196000 27285000 2044400 36559000 50224000 52597000 31607000 24943000 21514000 22737000 26917000 2 2 1 2 2 2 2 2 2 2 2 8157000 13163000 0 14419000 7523400 7076100 7305000 9910100 8774900 9712200 11924000 7594700 12287000 635460 14512000 7206200 7725300 7466700 9927000 8974400 9493600 11405000 1 1 0 1 1 1 1 1 1 1 1 1970900000 1230500000 740450000 8512 1294 7931 45236;45237;45238;45239 54696;54697;54698;54699;54700 54697 5 ICLDQQNPLYK Unmodified 1390.6915 0.69148574 39 CON__P02777 yes yes 0 0 0 0 By MS/MS 7 0 2 2 58.672 59.404 2;3 2.0115E-14 19147 20211116_3435_TMUAki_TMT10x_P_F7 188.87 157.8 + 2357100 3981000 88868 4985800 5065700 5407900 3060100 2399700 2646600 2351200 3129600 2195300 3718500 316170 5021700 4812200 5415500 3196000 2590200 2727700 2298300 3004100 1 1 1 1 1 1 1 1 1 1 1 2357100 3981000 88868 4985800 5065700 5407900 3060100 2399700 2646600 2351200 3129600 2195300 3718500 316170 5021700 4812200 5415500 3196000 2590200 2727700 2298300 3004100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 556220000 556220000 0 8513 39 7932 45240;45241 54701;54702 54701 2 ICLDQQNPLYKK Unmodified 1518.7864 0.78644876 39 CON__P02777 yes yes 0 0 0 1 By MS/MS By MS/MS 2.75 3.03 3 1 3 1 53.167 53.269 3 0.00076741 15327 20211116_3428_TMUAki_TMT10x_P_F1 76.073 55.692 + 7479900 11369000 33735 14756000 19287000 17220000 10122000 7656200 8096000 7129600 9959100 6964600 10621000 794920 14851000 18264000 17175000 10684000 8251200 8391100 6984800 9549500 2 2 1 2 2 2 2 2 2 2 2 7479900 11369000 33735 14756000 19287000 17220000 10122000 7656200 8096000 7129600 9959100 6964600 10621000 794920 14851000 18264000 17175000 10684000 8251200 8391100 6984800 9549500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 370900000 370900000 0 8514 39 7933 45242;45243;45244;45245 54703;54704;54705;54706;54707 54704 5 ICLQPPPTSR Unmodified 1167.607 0.60702783 820 P26640 VARS Valine--tRNA ligase yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 42.874 43.065 2 8.7326E-05 10835 20211116_3447_TMUAki_TMT10x_S_F8 98.233 40.674 803130 1194700 11645 1769000 2612700 2194200 1190700 1203500 1288800 1001400 1246700 747880 1116900 102780 1770500 2470200 2186800 1285200 1267600 1305300 986380 1203900 1 1 1 1 1 1 1 1 1 1 1 803130 1194700 11645 1769000 2612700 2194200 1190700 1203500 1288800 1001400 1246700 747880 1116900 102780 1770500 2470200 2186800 1285200 1267600 1305300 986380 1203900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57773000 57773000 0 8515 820 7934 45246;45247;45248 54708;54709;54710 54710 3 ICPVEFNPNFVAR Unmodified 1561.7711 0.77113304 3131 Q9UI30;Q9UI30-2 TRMT112 Multifunctional methyltransferase subunit TRM112-like protein yes no 0 0 0 0 By MS/MS By MS/MS 6.2 2.64 2 4 4 4 6 66.306 66.433 2;3 5.7948E-30 20762 20211116_3436_TMUAki_TMT10x_P_F8 252.16 189.58 41271000 69840000 199740 66021000 47194000 52521000 43169000 39510000 32698000 39241000 51380000 38426000 65154000 3330500 67420000 45139000 54046000 43675000 40820000 34385000 38336000 48986000 11 11 6 11 11 11 11 11 11 11 11 12885000 20224000 26889 19588000 12812000 21054000 13350000 10367000 9595800 11251000 14748000 11996000 18869000 907840 20050000 12288000 21118000 13397000 11106000 10109000 10952000 14067000 3 3 1 3 3 3 3 3 3 3 3 28386000 49616000 172850 46433000 34382000 31467000 29819000 29144000 23102000 27990000 36632000 26430000 46285000 2422600 47370000 32851000 32927000 30277000 29714000 24276000 27384000 34919000 8 8 5 8 8 8 8 8 8 8 8 10745000000 6053900000 4691300000 8516 3131 7935 45249;45250;45251;45252;45253;45254;45255;45256;45257;45258 54711;54712;54713;54714;54715;54716;54717;54718;54719;54720;54721;54722;54723;54724 54713 14 ICPVETLVEEAIQCAEK Unmodified 1987.9595 0.95946368 865 P30084 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 2.59 1.42 4 6 3 2 1 1 6 11 81.896 81.886 2;3;4 2.0374E-47 28500 20211116_3429_TMUAki_TMT10x_P_F2 246.96 226.31 44649000 70552000 199360 70006000 42287000 42991000 45075000 20919000 19209000 23477000 43510000 41572000 65830000 3133000 71052000 40613000 44966000 44775000 22460000 21536000 22824000 41221000 16 16 11 16 16 16 16 16 16 16 16 25717000 38719000 65907 38312000 14882000 22591000 17989000 10221000 9736600 11979000 22741000 23944000 36127000 1816500 38879000 14337000 23706000 17829000 11069000 10728000 11627000 21535000 8 8 6 8 8 8 8 8 8 8 8 18932000 31833000 133450 31694000 27404000 20399000 27086000 10699000 9472700 11499000 20769000 17628000 29703000 1316600 32174000 26276000 21260000 26946000 11391000 10808000 11197000 19686000 8 8 5 8 8 8 8 8 8 8 8 8987700000 3860600000 5127100000 8517 865 7936 45259;45260;45261;45262;45263;45264;45265;45266;45267;45268;45269;45270;45271;45272;45273;45274;45275 54725;54726;54727;54728;54729;54730;54731;54732;54733;54734;54735;54736;54737;54738;54739;54740;54741;54742 54727 18 ICQELTAAARPFR Unmodified 1531.7929 0.79293112 2705 Q9BW92;Q9BW92-2 TARS2 Threonine--tRNA ligase, mitochondrial yes no 0 0 0 1 By matching By MS/MS 2 0 2 1 1 52.323 52.113 3 4.1512E-06 15182 20211116_3440_TMUAki_TMT10x_S_F2 107.44 74.943 2121400 3532100 65013 3460000 2293100 1873100 1867600 2546100 2578400 2169700 2689200 1975700 3295600 238870 3511100 2192000 2021200 1938600 2543500 2595900 2134600 2590800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2121400 3532100 65013 3460000 2293100 1873100 1867600 2546100 2578400 2169700 2689200 1975700 3295600 238870 3511100 2192000 2021200 1938600 2543500 2595900 2134600 2590800 1 1 1 1 1 1 1 1 1 1 1 333130000 112330000 220800000 8518 2705 7937 45276;45277 54743 54743 1 ICRDPQTPVLQTK Unmodified 1554.8188 0.81881152 3175 Q9ULW0;Q9ULW0-2 TPX2 Targeting protein for Xklp2 yes no 0 0 0 1 By matching By MS/MS 8 0 2 1 1 37.77 38.127 3 3.3075E-05 8661 20211116_3447_TMUAki_TMT10x_S_F8 99.927 75.545 136220 239550 332.62 270020 119610 115870 138870 137210 187940 157860 213510 126830 223640 11371 271010 115200 128030 141370 139050 189950 153330 205170 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 136220 239550 332.62 270020 119610 115870 138870 137210 187940 157860 213510 126830 223640 11371 271010 115200 128030 141370 139050 189950 153330 205170 1 1 1 1 1 1 1 1 1 1 1 32320000 20445000 11874000 8519 3175 7938 45278;45279 54744 54744 1 ICRPLLIVEK Unmodified 1239.7373 0.73731372 881 P30876 POLR2B DNA-directed RNA polymerase II subunit RPB2 yes yes 0 0 0 1 By MS/MS 2 0 1 1 52.583 52.329 3 0.00058604 16545 20211116_3429_TMUAki_TMT10x_P_F2 94.767 61.538 2436900 3918900 29694 4237100 6126200 6260600 3318300 3514800 3123900 3087900 3605500 2269200 3658000 281380 4330300 5805200 6191400 3506700 3699400 3203700 3033400 3463200 1 1 1 1 1 1 1 1 1 1 1 2436900 3918900 29694 4237100 6126200 6260600 3318300 3514800 3123900 3087900 3605500 2269200 3658000 281380 4330300 5805200 6191400 3506700 3699400 3203700 3033400 3463200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 246110000 246110000 0 8520 881 7939 45280 54745 54745 1 ICSKPVVLPK Unmodified 1139.6737 0.67365083 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 1 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 46.79 46.716 3 6.8251E-05 15786 20211116_3441_TMUAki_TMT10x_S_F3 91.936 62.589 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8521 1433 7940 45281;45282;45283 54746;54747;54748 54748 3 ICSWNVDGLR Unmodified 1218.5815 0.58154136 829 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 56.981 57.383 2 5.4743E-17 18849 20211116_3446_TMUAki_TMT10x_S_F7 214.05 172.21 9204800 14978000 72097 18852000 21335000 19300000 16237000 7611600 7070700 8535000 11803000 8570300 13990000 897890 18965000 20327000 19371000 16453000 8356500 7762300 8297700 11239000 2 2 1 2 2 2 2 2 2 2 2 9204800 14978000 72097 18852000 21335000 19300000 16237000 7611600 7070700 8535000 11803000 8570300 13990000 897890 18965000 20327000 19371000 16453000 8356500 7762300 8297700 11239000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1439800000 1439800000 0 8522 829 7941 45284;45285;45286 54749;54750;54751 54751 3 ICYQEVSQCFGVLSSR Unmodified 1931.887 0.88696744 1847 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 0 By MS/MS 8 0 1 1 70.506 70.587 3 5.7835E-29 22510 20211116_3436_TMUAki_TMT10x_P_F8 181.97 153.69 6278600 9855600 36730 9813700 6864300 11061000 7116200 5596600 4901600 5772300 6798000 5845800 9196200 514630 10033000 6587200 11068000 7136500 5971300 5150700 5630300 6499100 2 2 1 2 2 2 2 2 2 2 2 6278600 9855600 36730 9813700 6864300 11061000 7116200 5596600 4901600 5772300 6798000 5845800 9196200 514630 10033000 6587200 11068000 7136500 5971300 5150700 5630300 6499100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 870520000 870520000 0 8523 1847 7942 45287 54752;54753 54752 2 IDAFHYVQLGTAYR Unmodified 1652.8311 0.83109076 2831 Q9H857;Q9H857-2;Q9H857-4;Q9H857-3 NT5DC2 5'-nucleotidase domain-containing protein 2 yes no 0 0 0 0 By MS/MS 1 0 1 1 63.125 63.125 3 0.00060785 19401 20211116_3428_TMUAki_TMT10x_P_F1 76.311 60.087 1573800 2251800 0 2233600 1926900 3111000 1969700 1989000 1808100 1702700 2052300 1465300 2101100 132310 2293100 1848500 3089900 1990700 2070300 1855200 1674800 1972200 1 1 0 1 1 1 1 1 1 1 1 1573800 2251800 0 2233600 1926900 3111000 1969700 1989000 1808100 1702700 2052300 1465300 2101100 132310 2293100 1848500 3089900 1990700 2070300 1855200 1674800 1972200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 498480000 498480000 0 8524 2831 7943 45288 54754 54754 1 IDATSASVLASR Unmodified 1189.6303 0.63026569 654 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 46.97 47.133 2 2.7113E-20 12612 20211116_3445_TMUAki_TMT10x_S_F6 236.77 201.96 5106100 8431400 19300 9921000 5192800 4579400 4869600 6316200 7115400 5618400 7288800 4754400 7873000 442530 9935900 4972100 5033700 5025900 6313300 7146500 5516000 7025800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5106100 8431400 19300 9921000 5192800 4579400 4869600 6316200 7115400 5618400 7288800 4754400 7873000 442530 9935900 4972100 5033700 5025900 6313300 7146500 5516000 7025800 2 2 2 2 2 2 2 2 2 2 2 598320000 0 598320000 8525 654 7944 45289;45290;45291 54755;54756;54757 54757 3 IDAVNAETIR Unmodified 1100.5826 0.58258722 335 O75439 PMPCB Mitochondrial-processing peptidase subunit beta yes yes 0 0 0 0 By MS/MS 3 0 1 1 42.636 42.682 2 0.00020059 12994 20211116_3430_TMUAki_TMT10x_P_F3 87.298 48.276 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8526 335 7945 45292 54758 54758 1 IDCDNLEQYFIQQGGGPDK Unmodified 2195.9793 0.9793475 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 76.937 76.915 3 0.00010167 25843 20211116_3442_TMUAki_TMT10x_S_F4 71.842 55.349 50885000 77019000 1783700 84679000 53220000 55910000 63179000 18346000 12528000 20005000 50834000 47392000 71896000 5913800 85415000 51388000 57888000 61997000 20599000 16321000 19470000 47852000 3 3 3 3 3 3 3 3 3 3 3 36732000 54260000 1130700 59990000 34795000 44500000 46409000 13623000 8955900 14310000 36315000 34210000 50651000 4072000 60563000 33724000 45595000 45308000 15430000 11721000 13948000 34185000 2 2 2 2 2 2 2 2 2 2 2 14152000 22759000 653020 24689000 18425000 11410000 16770000 4723000 3572100 5695100 14519000 13182000 21244000 1841800 24852000 17665000 12292000 16688000 5168600 4599900 5522100 13667000 1 1 1 1 1 1 1 1 1 1 1 1368200000 621700000 746480000 8527 2334 7946 45293;45294 54759 54759 1 IDCDNLEQYFIQQGGGPDKK Unmodified 2324.0743 0.074310515 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 1 By MS/MS By MS/MS 5.91 0.996 1 3 3 4 6 5 69.094 69.242 3;4 1.8128E-18 21422 20211116_3444_TMUAki_TMT10x_S_F5 153.11 141.14 161150000 269470000 1783800 269300000 174120000 210650000 160340000 134930000 120670000 134010000 177890000 150050000 251450000 14574000 273870000 166680000 216510000 162140000 140990000 126520000 130920000 169830000 24 24 14 24 24 24 24 24 24 24 24 74873000 119970000 839380 121570000 78540000 125360000 79430000 58571000 54019000 58239000 78553000 69718000 111950000 6751100 123970000 75362000 125970000 79736000 62912000 56937000 56893000 75018000 11 11 6 11 11 11 11 11 11 11 11 86273000 149510000 944470 147730000 95584000 85286000 80913000 76363000 66647000 75768000 99332000 80333000 139500000 7823000 149900000 91317000 90535000 82399000 78073000 69586000 74023000 94810000 13 13 8 13 13 13 13 13 13 13 13 12351000000 6133700000 6217200000 8528 2334 7947 45295;45296;45297;45298;45299;45300;45301;45302;45303;45304;45305 54760;54761;54762;54763;54764;54765;54766;54767;54768;54769;54770;54771;54772;54773;54774;54775;54776;54777;54778;54779;54780;54781;54782;54783 54772 24 IDCFSEVPTSVFGEK Unmodified 1713.792 0.79198764 103 O00567 NOP56 Nucleolar protein 56 yes yes 0 0 0 0 By MS/MS By MS/MS 5.56 0.831 1 3 4 1 4 5 76.662 76.654 2;3 1.63E-23 25582 20211116_3433_TMUAki_TMT10x_P_F5 185.25 161.4 74061000 126920000 1555200 132570000 90608000 98011000 93746000 61873000 55605000 68696000 88125000 68968000 118450000 7634300 134330000 87040000 101170000 93746000 64936000 59391000 66811000 84004000 10 10 5 10 10 10 10 10 10 10 10 29769000 49343000 740080 51824000 32826000 51182000 37930000 23742000 22394000 26725000 33758000 27723000 46051000 3134100 52684000 31644000 51564000 37726000 25613000 23865000 25978000 32213000 4 4 1 4 4 4 4 4 4 4 4 44292000 77581000 815070 80749000 57782000 46828000 55816000 38131000 33211000 41971000 54368000 41246000 72403000 4500200 81647000 55396000 49602000 56020000 39323000 35526000 40833000 51792000 6 6 4 6 6 6 6 6 6 6 6 8642500000 3812300000 4830300000 8529 103 7948 45306;45307;45308;45309;45310;45311;45312;45313;45314 54784;54785;54786;54787;54788;54789;54790;54791;54792;54793 54784 10 IDDFKAEDFQIEGYNPHPTIK Unmodified 2476.1911 0.19105483 493 P04818;P04818-2;P04818-3 TYMS Thymidylate synthase yes no 0 0 0 1 By MS/MS By MS/MS 5.5 0.957 1 2 2 1 3 3 63.986 64.108 4 2.9917E-19 19287 20211116_3444_TMUAki_TMT10x_S_F5 150.98 128.55 52767000 90506000 625450 101150000 53962000 69231000 52315000 37990000 38258000 42079000 62151000 49135000 84492000 4873100 101960000 51731000 71795000 52717000 40324000 40384000 40928000 59215000 9 9 6 9 9 9 9 9 9 9 9 15154000 24202000 188010 31630000 16301000 29953000 17125000 10083000 11381000 11326000 18224000 14111000 22611000 1447600 31718000 15663000 30171000 17150000 11292000 12073000 11011000 17368000 2 2 2 2 2 2 2 2 2 2 2 37613000 66304000 437440 69519000 37660000 39278000 35190000 27906000 26877000 30752000 43927000 35024000 61881000 3425500 70241000 36068000 41623000 35567000 29032000 28311000 29917000 41847000 7 7 4 7 7 7 7 7 7 7 7 6725300000 3459500000 3265800000 8530 493 7949 45315;45316;45317;45318;45319;45320 54794;54795;54796;54797;54798;54799;54800;54801;54802 54796 9 IDDIRKPGESEE Unmodified 1386.6627 0.66268803 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 2 By MS/MS 3 0 1 1 40.54 40.238 3 0.067527 13187 20211116_3441_TMUAki_TMT10x_S_F3 49.627 26.748 1489800 2595600 17166 2716400 1685800 1314400 1491400 1798500 2086800 1658800 2269100 1387300 2422400 142260 2741700 1612600 1436400 1541400 1799900 2103400 1625900 2183300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1489800 2595600 17166 2716400 1685800 1314400 1491400 1798500 2086800 1658800 2269100 1387300 2422400 142260 2741700 1612600 1436400 1541400 1799900 2103400 1625900 2183300 2 2 2 2 2 2 2 2 2 2 2 39033000 0 39033000 8531 1079 7950 45321 54803;54804 54804 2 IDDVVNTR Unmodified 930.47706 0.47705951 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 By MS/MS By MS/MS 2.8 0.748 2 2 1 2 3 37.648 37.641 2 0.0024257 9505 20211116_3440_TMUAki_TMT10x_S_F2 109.71 71.581 3436800 5876000 31178 6063400 3759100 3250600 4063000 3438600 3822700 3388700 4559500 3200200 5483600 314810 6130300 3613700 3489300 4097900 3485100 3925600 3311600 4375600 7 7 4 7 7 7 7 7 7 7 7 413920 670360 0 631990 602600 671580 473260 305840 314920 321980 466930 385370 625380 33266 648030 574310 673500 481910 329890 332700 313790 445730 3 3 0 3 3 3 3 3 3 3 3 3022900 5205600 31178 5431400 3156500 2579100 3589700 3132800 3507700 3066700 4092600 2814800 4858200 281540 5482300 3039300 2815800 3616000 3155200 3592900 2997800 3929900 4 4 4 4 4 4 4 4 4 4 4 109630000 14527000 95108000 8532 1147 7951 45322;45323;45324;45325;45326 54805;54806;54807;54808;54809;54810;54811;54812 54810 8 IDEMPEAAVK Oxidation (M) 1117.5325 0.53252548 1165 P51858 HDGF Hepatoma-derived growth factor yes yes 0 0 1 0 By MS/MS 3 0 2 2 39.296 39.345 2;3 0.053461 11699 20211116_3430_TMUAki_TMT10x_P_F3 58.246 38.082 197750 307290 1218.1 281680 509260 409000 245740 207880 251020 200060 260570 184140 286640 21893 291070 481750 404290 263210 221270 255480 195710 251070 1 1 1 1 1 1 1 1 1 1 1 197750 307290 1218.1 281680 509260 409000 245740 207880 251020 200060 260570 184140 286640 21893 291070 481750 404290 263210 221270 255480 195710 251070 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11573000 11573000 0 8533 1165 7952 45327;45328 54813;54814 54813 1552 2 IDEPLEGSEDR Unmodified 1258.5677 0.56772501 1329;1330 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 39.68 39.653 2 2.0013E-21 9992 20211116_3428_TMUAki_TMT10x_P_F1 206.73 173.73 1257300 2211000 0 2426000 799440 813660 1353300 1063800 1520100 1045900 1779000 1170600 2063900 15682 2435600 780030 933980 1349000 1068400 1548300 1022200 1708100 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1257300 2211000 0 2426000 799440 813660 1353300 1063800 1520100 1045900 1779000 1170600 2063900 15682 2435600 780030 933980 1349000 1068400 1548300 1022200 1708100 2 2 0 2 2 2 2 2 2 2 2 88284000 0 88284000 8534 1329;1330 7953 45329;45330;45331 54815;54816;54817 54815 3 IDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVK Unmodified 3828.9381 0.93814119 1329;1330 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 1 By MS/MS By MS/MS 4.62 1.27 3 4 2 3 1 6 7 78.646 78.625 3;4 1.8224E-88 26149 20211116_3431_TMUAki_TMT10x_P_F4 242.5 224.57 24061000 36643000 72767 36116000 27776000 35255000 29411000 23068000 22921000 24411000 28807000 22402000 34189000 1494100 36869000 26665000 35694000 29547000 24109000 23811000 23785000 27607000 7 7 2 7 7 7 7 7 7 7 7 14124000 21148000 13155 19821000 12475000 24468000 15936000 13725000 12852000 14590000 17154000 13149000 19728000 956970 20384000 12036000 24398000 15888000 14522000 13362000 14213000 16415000 4 4 1 4 4 4 4 4 4 4 4 9937600 15495000 59612 16295000 15301000 10787000 13475000 9342900 10070000 9821000 11653000 9253300 14461000 537130 16485000 14629000 11296000 13658000 9586400 10449000 9572000 11192000 3 3 1 3 3 3 3 3 3 3 3 22177000000 9686200000 12491000000 8535 1329;1330 7954 45332;45333;45334;45335;45336;45337;45338;45339;45340;45341;45342;45343;45344 54818;54819;54820;54821;54822;54823;54824 54818 7 IDESIHLQLR Unmodified 1222.667 0.66698555 3224 Q9Y262;Q9Y262-2 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 48.973 49.128 3 4.9814E-10 14038 20211116_3431_TMUAki_TMT10x_P_F4 187.97 138.16 3000700 4504700 29347 5329700 4601800 5358300 3414700 3272700 3024900 3221300 3794600 2793900 4206400 260600 5379300 4381900 5410100 3513700 3431100 3121700 3148200 3636700 3 3 1 3 3 3 3 3 3 3 3 2234500 3343700 29347 4028800 3916800 4678400 2730500 2469700 2225400 2385800 2855700 2080600 3122600 206180 4071400 3725700 4676300 2816100 2620000 2308500 2333600 2735300 2 2 1 2 2 2 2 2 2 2 2 766150 1160900 0 1300900 684930 679970 684140 802980 799460 835500 938900 713300 1083800 54424 1307900 656200 733770 697560 811180 813220 814660 901410 1 1 0 1 1 1 1 1 1 1 1 495330000 307430000 187890000 8536 3224 7955 45345;45346 54825;54826;54827 54825 3 IDFDSVSSIMASSQ Unmodified 1485.6657 0.6657245 3084 Q9UBQ5 EIF3K Eukaryotic translation initiation factor 3 subunit K yes yes 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 2 3 80.275 80.272 2 9.4237E-05 26217 20211116_3445_TMUAki_TMT10x_S_F6 97.565 79.405 34078000 55467000 146820 55115000 39231000 41474000 40154000 18140000 16276000 22452000 36723000 31729000 51755000 2777100 56048000 37632000 42568000 39942000 19750000 18328000 21750000 34792000 5 5 3 5 5 5 5 5 5 5 5 19719000 32347000 92805 32585000 19400000 28695000 23828000 11466000 10402000 13154000 21189000 18360000 30184000 1570600 33167000 18709000 29085000 23522000 12578000 11552000 12777000 20106000 3 3 2 3 3 3 3 3 3 3 3 14359000 23120000 54016 22530000 19831000 12778000 16326000 6674600 5873900 9297800 15534000 13369000 21571000 1206500 22880000 18923000 13482000 16420000 7172800 6775800 8972700 14686000 2 2 1 2 2 2 2 2 2 2 2 2338200000 1137800000 1200300000 8537 3084 7956 45347;45348;45349;45350;45351 54828;54829;54830;54831;54832 54832 5 IDFDSVSSIMASSQ Oxidation (M) 1501.6606 0.66063912 3084 Q9UBQ5 EIF3K Eukaryotic translation initiation factor 3 subunit K yes yes 0 0 1 0 By MS/MS 3 0 1 1 73.171 72.858 2 8.1985E-06 26416 20211116_3441_TMUAki_TMT10x_S_F3 87.258 78.395 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8538 3084 7956 45352 54833 54833 3129 1 IDFLPHYDTLVK Unmodified 1459.7711 0.77111627 20 A6NHR9;A6NHR9-2 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 3 2 1 69.718 69.995 3 3.104E-09 23572 20211116_3435_TMUAki_TMT10x_P_F7 125.28 102.75 7005100 11950000 171780 11395000 8537100 7944900 8015500 8809700 8025500 8806000 9761700 6523700 11149000 762310 11613000 8183100 8326000 8158100 8913400 8225800 8600500 9363000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7005100 11950000 171780 11395000 8537100 7944900 8015500 8809700 8025500 8806000 9761700 6523700 11149000 762310 11613000 8183100 8326000 8158100 8913400 8225800 8600500 9363000 2 2 2 2 2 2 2 2 2 2 2 304790000 0 304790000 8539 20 7957 45353;45354;45355 54834;54835;54836;54837 54834 4 IDFYFDENPYFENK Unmodified 1839.7992 0.79918151 1478 Q01105;Q01105-2;Q01105-3;Q01105-4;P0DME0 SET;SETSIP Protein SET;Protein SETSIP yes no 0 0 0 0 By MS/MS By MS/MS 3.6 1.56 4 5 16 5 6 6 1 26 17 74.745 74.74 2;3 2.095E-39 25728 20211116_3445_TMUAki_TMT10x_S_F6 257.54 230.79 411120000 675380000 1855800 669980000 424490000 576520000 551480000 297110000 335340000 390840000 485260000 382780000 630180000 30861000 682470000 410130000 586800000 546060000 318990000 355930000 377850000 463470000 57 57 30 57 57 57 57 57 57 57 57 199360000 314650000 507670 314370000 181830000 315000000 224350000 140720000 163150000 187750000 221730000 185610000 293600000 14525000 320740000 175300000 316940000 223450000 153270000 170730000 181430000 212080000 34 34 16 34 34 34 34 34 34 34 34 211760000 360730000 1348100 355610000 242670000 261520000 327130000 156390000 172200000 203090000 263530000 197170000 336580000 16336000 361730000 234830000 269860000 322610000 165710000 185200000 196420000 251390000 23 23 14 23 23 23 23 23 23 23 23 79223000000 38796000000 40427000000 8540 1478 7958 45356;45357;45358;45359;45360;45361;45362;45363;45364;45365;45366;45367;45368;45369;45370;45371;45372;45373;45374;45375;45376;45377;45378;45379;45380;45381;45382;45383;45384;45385;45386;45387;45388;45389;45390;45391;45392;45393;45394;45395;45396;45397;45398 54838;54839;54840;54841;54842;54843;54844;54845;54846;54847;54848;54849;54850;54851;54852;54853;54854;54855;54856;54857;54858;54859;54860;54861;54862;54863;54864;54865;54866;54867;54868;54869;54870;54871;54872;54873;54874;54875;54876;54877;54878;54879;54880;54881;54882;54883;54884;54885;54886;54887;54888;54889;54890;54891;54892;54893;54894;54895;54896;54897;54898;54899 54895 62 IDGDKDGFVTVDELK Unmodified 1649.8148 0.81483158 252 O43852;O43852-3;O43852-10;O43852-6;O43852-5;O43852-13;O43852-14;O43852-11;O43852-9 CALU Calumenin yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.957 1 2 2 1 4 2 62.567 62.449 3 3.2689E-15 21175 20211116_3430_TMUAki_TMT10x_P_F3 159.19 122.56 60170000 86845000 214020 130160000 79604000 74176000 53258000 42865000 49108000 45681000 67477000 56023000 81197000 5157000 128890000 75659000 78315000 55271000 45247000 50792000 44499000 64524000 8 8 4 8 8 8 8 8 8 8 8 38517000 54237000 183750 80679000 64919000 61469000 39599000 26650000 30753000 28865000 42012000 35863000 50707000 3518500 80151000 61608000 63023000 41217000 28919000 32073000 28100000 40179000 5 5 2 5 5 5 5 5 5 5 5 21652000 32608000 30270 49480000 14685000 12707000 13658000 16215000 18355000 16816000 25465000 20160000 30490000 1638400 48737000 14051000 15292000 14053000 16327000 18719000 16399000 24345000 3 3 2 3 3 3 3 3 3 3 3 3553400000 2481300000 1072100000 8541 252 7959 45399;45400;45401;45402;45403;45404 54900;54901;54902;54903;54904;54905;54906;54907;54908 54902 9 IDGPVISESTPIAETIMASSNESLVVNR Oxidation (M) 2944.4699 0.46993181 1007 P42167 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes yes 0 0 1 0 By MS/MS By MS/MS 4 0.707 1 2 1 1 3 77.76 77.73 3 4.5794E-09 28273 20211116_3441_TMUAki_TMT10x_S_F3 89.272 76.595 9976400 17035000 18090 15431000 13327000 12908000 12383000 10295000 9870500 10550000 12425000 9288700 15890000 838170 15818000 12753000 13247000 12532000 10607000 10242000 10293000 11907000 5 5 2 5 5 5 5 5 5 5 5 1559700 2669600 0 2252600 1515300 2945600 1619300 1573700 1655300 1510800 1874600 1452200 2489400 126440 2337900 1455400 2927200 1638200 1667400 1690200 1478200 1801500 1 1 0 1 1 1 1 1 1 1 1 8416700 14366000 18090 13179000 11812000 9962200 10763000 8721600 8215200 9039300 10551000 7836500 13400000 711730 13480000 11297000 10319000 10894000 8939600 8551900 8815200 10106000 4 4 2 4 4 4 4 4 4 4 4 3538200000 1140300000 2397900000 8542 1007 7960 45405;45406;45407;45408 54909;54910;54911;54912 54910 1303 4 IDGQQTIIACIESHQFQAK Unmodified 2186.079 0.079001963 1062 P47755 CAPZA2 F-actin-capping protein subunit alpha-2 yes yes 0 0 0 0 By MS/MS 7 0 1 1 68.022 68.552 3 4.0089E-11 22928 20211116_3435_TMUAki_TMT10x_P_F7 122.22 112.56 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8543 1062 7961 45409 54913 54913 1 IDHILDAL Unmodified 908.49673 0.49673232 494 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 77.227 77.244 2 0.10572 25583 20211116_3431_TMUAki_TMT10x_P_F4 47.067 38.304 1540600 2705500 25864 2419600 1400200 2752400 1825600 1355000 1214100 1396400 1726000 1434600 2523400 149860 2493600 1354900 2752000 1810600 1449400 1280000 1362100 1649200 1 1 1 1 1 1 1 1 1 1 1 1540600 2705500 25864 2419600 1400200 2752400 1825600 1355000 1214100 1396400 1726000 1434600 2523400 149860 2493600 1354900 2752000 1810600 1449400 1280000 1362100 1649200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 286370000 286370000 0 8544 494 7962 45410 54914 54914 1 IDIFPAKQENGDLSPFSGTSLR Unmodified 2391.207 0.20703925 728 P19174-2 PLCG1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 yes yes 0 0 0 1 By MS/MS 8 0 1 1 73.721 73.564 3 2.5423E-12 23228 20211116_3447_TMUAki_TMT10x_S_F8 117.43 100.75 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8545 728 7963 45411 54915 54915 1 IDIIPNPQER Unmodified 1193.6404 0.64043645 553 P08238;Q58FF7 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 0 0 0 0 By MS/MS By MS/MS 4.06 1.21 2 4 4 5 2 9 8 53.781 53.787 2;3 7.236E-07 16158 20211116_3433_TMUAki_TMT10x_P_F5 157.66 114.48 77369000 123360000 538470 161050000 113560000 112310000 76660000 115210000 103350000 90489000 111480000 72040000 115250000 7070800 160910000 107970000 117490000 80515000 116260000 104260000 89395000 107290000 20 20 12 20 20 20 20 20 20 20 20 34764000 53220000 159590 69207000 77502000 80625000 44415000 51568000 46485000 39836000 49253000 32368000 49720000 3432700 69644000 73477000 80778000 46846000 53546000 47299000 39389000 47427000 8 8 4 8 8 8 8 8 8 8 8 42606000 70144000 378870 91843000 36060000 31690000 32245000 63646000 56862000 50654000 62232000 39672000 65533000 3638100 91263000 34493000 36712000 33669000 62709000 56961000 50006000 59866000 12 12 8 12 12 12 12 12 12 12 12 26472000000 13994000000 12477000000 8546 553 7964 45412;45413;45414;45415;45416;45417;45418;45419;45420;45421;45422;45423;45424;45425;45426;45427;45428 54916;54917;54918;54919;54920;54921;54922;54923;54924;54925;54926;54927;54928;54929;54930;54931;54932;54933;54934;54935;54936;54937 54922 22 IDILDSALLRPGR Unmodified 1437.8304 0.83036248 1337 P62195;P62195-2 PSMC5 26S protease regulatory subunit 8 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 3.2 2 1 1 2 3 3 70.827 70.748 3 3.5583E-30 22565 20211116_3436_TMUAki_TMT10x_P_F8 251.3 171.2 12891000 20912000 94659 21452000 13185000 17972000 15357000 12698000 12494000 13396000 15278000 12003000 19515000 1147200 21795000 12701000 18405000 15375000 13198000 12935000 13055000 14652000 6 6 4 6 6 6 6 6 6 6 6 5201600 8291400 45829 8806100 5907200 9599000 6144500 5094000 4944900 5330600 6055100 4843500 7738700 477180 8959200 5672400 9628700 6183000 5413700 5122500 5196400 5806800 2 2 1 2 2 2 2 2 2 2 2 7688900 12620000 48830 12646000 7277400 8373100 9212900 7604300 7549500 8065700 9223000 7159400 11776000 670010 12836000 7029100 8776200 9192300 7784100 7812500 7858400 8845300 4 4 3 4 4 4 4 4 4 4 4 5137000000 2224800000 2912300000 8547 1337 7965 45429;45430;45431;45432;45433;45434 54938;54939;54940;54941;54942;54943;54944 54940 7 IDILDSALLRPGRIDR Unmodified 1822.0425 0.042480522 1337 P62195;P62195-2 PSMC5 26S protease regulatory subunit 8 yes no 0 0 0 2 By MS/MS 1.5 0.5 1 1 2 66.765 66.546 4 4.4157E-21 22859 20211116_3439_TMUAki_TMT10x_S_F1 169.37 132.28 2565100 4319700 36765 4211700 3618700 2902900 2792300 3161400 2876400 3142200 3542100 2388400 4030300 231350 4284700 3449300 3043800 2878100 3200700 2946100 3069600 3396300 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2565100 4319700 36765 4211700 3618700 2902900 2792300 3161400 2876400 3142200 3542100 2388400 4030300 231350 4284700 3449300 3043800 2878100 3200700 2946100 3069600 3396300 3 3 2 3 3 3 3 3 3 3 3 520290000 0 520290000 8548 1337 7966 45435;45436 54945;54946;54947 54945 3 IDILTELRDK Unmodified 1214.6871 0.68705229 62 O00139;O00139-2;O00139-1;O00139-5;O00139-4 KIF2A Kinesin-like protein KIF2A yes no 0 0 0 1 By MS/MS 6 0 2 2 68.139 68.103 3 2.2716E-09 20857 20211116_3434_TMUAki_TMT10x_P_F6 151.79 121.4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8549 62 7967 45437;45438 54948;54949 54948 2 IDISPAPENPHYCLTPELLQVK Unmodified 2533.2887 0.28866039 2525 Q96N67;Q96N67-3;Q96N67-2;Q96N67-4;Q96N67-5;Q96N67-6;Q96N67-7 DOCK7 Dedicator of cytokinesis protein 7 yes no 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 73.339 73.254 3;4 5.0002E-05 23399 20211116_3445_TMUAki_TMT10x_S_F6 71.527 58.47 5383500 8824200 66893 7426300 7415500 6169600 6555500 5385000 4965700 5494400 6320900 5012000 8228700 404870 7656000 7084100 6345100 6645300 5518000 5169400 5361600 6055600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5383500 8824200 66893 7426300 7415500 6169600 6555500 5385000 4965700 5494400 6320900 5012000 8228700 404870 7656000 7084100 6345100 6645300 5518000 5169400 5361600 6055600 2 2 1 2 2 2 2 2 2 2 2 465160000 0 465160000 8550 2525 7968 45439;45440 54950;54951;54952 54951 3 IDISPVLLQK Unmodified 1124.6805 0.68051035 1130 P49959;P49959-2;P49959-3 MRE11A Double-strand break repair protein MRE11A yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 3 3 3 3 72.151 72.257 2;3 1.6722E-06 22727 20211116_3447_TMUAki_TMT10x_S_F8 106.2 64.751 32322000 51831000 152440 50858000 42640000 57339000 37085000 36578000 35159000 36821000 39500000 30095000 48360000 2816000 52050000 40745000 57547000 37848000 38245000 36006000 35952000 37969000 5 5 2 5 5 5 5 5 5 5 5 23027000 35773000 33521 36447000 31284000 47168000 26415000 25621000 25099000 25730000 27781000 21440000 33383000 2012800 37295000 29873000 46906000 27008000 27141000 25687000 25125000 26716000 3 3 1 3 3 3 3 3 3 3 3 9295700 16058000 118920 14411000 11356000 10171000 10670000 10957000 10059000 11091000 11719000 8655300 14978000 803190 14755000 10872000 10640000 10840000 11104000 10319000 10827000 11253000 2 2 1 2 2 2 2 2 2 2 2 2274000000 1373200000 900790000 8551 1130 7969 45441;45442;45443;45444;45445;45446 54953;54954;54955;54956;54957;54958;54959 54959 7 IDKPILK Unmodified 825.53239 0.53238955 1384 P62917 RPL8 60S ribosomal protein L8 yes yes 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 44.346 44.711 3 0.011163 13231 20211116_3435_TMUAki_TMT10x_P_F7 79.906 7.3591 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8552 1384 7970 45447;45448;45449 54960;54961;54962 54961 3 IDKTDYMVGSYGPR Oxidation (M) 1616.7505 0.75045718 1179 P52565 ARHGDIA Rho GDP-dissociation inhibitor 1 yes yes 0 0 1 1 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 44.645 44.899 3 0.0011222 13321 20211116_3435_TMUAki_TMT10x_P_F7 74.966 64.816 19866000 31795000 182580 43614000 57059000 50172000 27691000 44802000 53972000 28635000 37705000 18499000 29712000 2283800 43757000 53980000 50587000 30438000 45339000 53180000 28633000 36876000 8 8 4 8 8 8 8 8 8 8 8 11937000 18723000 182580 25662000 50070000 43782000 22258000 26459000 31677000 17285000 22099000 11116000 17496000 1693300 25960000 47321000 43095000 24323000 27501000 31474000 17260000 21615000 5 5 4 5 5 5 5 5 5 5 5 7929300 13072000 0 17952000 6988700 6390200 5433100 18343000 22296000 11350000 15606000 7382500 12216000 590580 17797000 6658500 7491700 6114400 17837000 21707000 11373000 15262000 3 3 0 3 3 3 3 3 3 3 3 3749500000 2578900000 1170600000 8553 1179 7971 45450;45451;45452;45453;45454;45455 54963;54964;54965;54966;54967;54968;54969;54970 54967 1587 8 IDKTDYMVGSYGPR Unmodified 1600.7555 0.75554256 1179 P52565 ARHGDIA Rho GDP-dissociation inhibitor 1 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 50.747 50.996 3 4.7018E-19 16254 20211116_3446_TMUAki_TMT10x_S_F7 169.37 156.81 36417000 57594000 533510 76993000 59627000 48872000 38643000 27161000 21655000 26844000 46759000 33912000 53814000 3841500 76755000 56678000 51035000 39768000 28701000 23664000 26230000 44329000 6 6 6 6 6 6 6 6 6 6 6 17497000 28454000 366170 36541000 47789000 39582000 29352000 16078000 13271000 14598000 23365000 16295000 26581000 2216200 36753000 45381000 39608000 30239000 17489000 14563000 14318000 22227000 4 4 4 4 4 4 4 4 4 4 4 18920000 29140000 167340 40452000 11838000 9290400 9290800 11082000 8383700 12246000 23394000 17617000 27233000 1625400 40003000 11297000 11427000 9529200 11212000 9101300 11912000 22103000 2 2 2 2 2 2 2 2 2 2 2 3605800000 2516000000 1089700000 8554 1179 7971 45456;45457;45458;45459;45460;45461 54971;54972;54973;54974;54975;54976;54977 54976 7 IDLAVLLGK Unmodified 940.59572 0.59571809 1685 Q14157;Q14157-1;Q14157-4;Q14157-3;Q14157-5 UBAP2L Ubiquitin-associated protein 2-like yes no 0 0 0 0 By MS/MS By matching 4 3.29 2 1 2 2 3 79.805 79.792 2 0.00068685 26320 20211116_3436_TMUAki_TMT10x_P_F8 114.89 73.242 8541700 13645000 10379 12361000 7972200 15562000 9730700 8927700 8536400 9148100 10013000 7953100 12727000 690150 12749000 7687700 15507000 9741400 9418500 8789000 8925400 9613100 2 2 1 2 2 2 2 2 2 2 2 8541700 13645000 10379 12361000 7972200 15562000 9730700 8927700 8536400 9148100 10013000 7953100 12727000 690150 12749000 7687700 15507000 9741400 9418500 8789000 8925400 9613100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1453100000 609820000 843270000 8555 1685 7972 45462;45463;45464;45465;45466 54978;54979 54979 2 IDLGERPVVQR Unmodified 1280.7201 0.72008375 2269 Q8TC07-2;Q8TC07;Q8TC07-3 TBC1D15 TBC1 domain family member 15 yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 38.45 38.513 3 2.4286E-08 10101 20211116_3433_TMUAki_TMT10x_P_F5 148.18 114.39 1763800 2761000 4597.6 2735700 3004200 2871200 1746400 2244800 2372500 1909000 2291400 1642300 2576200 167890 2794700 2849200 2902500 1856600 2304000 2383400 1878200 2212900 2 2 2 2 2 2 2 2 2 2 2 1277700 1961000 1837.8 1900400 2549500 2462000 1315200 1602600 1644500 1341800 1607100 1189700 1829600 125450 1951400 2413600 2454200 1408800 1665000 1657300 1321200 1551400 1 1 1 1 1 1 1 1 1 1 1 486140 800000 2759.7 835240 454680 409200 431280 642250 728020 567130 684310 452660 746620 42436 843220 435550 448380 447880 638980 726100 556990 661480 1 1 1 1 1 1 1 1 1 1 1 223180000 163310000 59868000 8556 2269 7973 45467;45468;45469 54980;54981 54980 2 IDLLQAFSQLICTCNSLK Unmodified 2123.0755 0.075496489 2971 Q9NVH2;Q9NVH2-3;Q9NVH2-2;Q9NVH2-4 INTS7 Integrator complex subunit 7 yes no 0 0 0 0 By MS/MS 6 0 1 1 83.856 83.869 3 4.6174E-05 27662 20211116_3445_TMUAki_TMT10x_S_F6 80.585 70.528 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8557 2971 7974 45470 54982 54982 1 IDLPAENSNSETIIITGK Unmodified 1913.9946 0.99458686 1467 Q00341;Q00341-2 HDLBP Vigilin yes no 0 0 0 0 By MS/MS 4 0 1 1 69.385 69.208 3 9.1554E-09 22719 20211116_3442_TMUAki_TMT10x_S_F4 117.67 99.528 2384800 4007900 63608 3665200 2498800 2510100 2505600 2103200 2000300 2208400 2753400 2220900 3738500 258590 3746000 2400000 2619300 2525500 2162100 2083800 2152500 2632800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2384800 4007900 63608 3665200 2498800 2510100 2505600 2103200 2000300 2208400 2753400 2220900 3738500 258590 3746000 2400000 2619300 2525500 2162100 2083800 2152500 2632800 1 1 1 1 1 1 1 1 1 1 1 332360000 0 332360000 8558 1467 7975 45471 54983 54983 1 IDLPEYQGEPDEISIQK Unmodified 1972.963 0.96295238 2722 Q9BY32;Q9BY32-2 ITPA Inosine triphosphate pyrophosphatase yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 70.696 70.347 3 2.034E-05 25432 20211116_3441_TMUAki_TMT10x_S_F3 84.653 73.214 10990000 20182000 0 18023000 11484000 15436000 13031000 13563000 15274000 14454000 15050000 10232000 18823000 821070 18500000 11044000 15842000 13206000 13911000 15433000 14080000 14525000 3 3 0 3 3 3 3 3 3 3 3 2899300 5495900 0 5111700 3067800 6119200 3589000 3391600 3953400 3625200 3868100 2699500 5126800 236020 5257000 2954200 6110400 3624500 3593000 4002900 3530900 3734000 1 1 0 1 1 1 1 1 1 1 1 8090800 14686000 0 12911000 8416700 9316400 9441800 10172000 11321000 10829000 11182000 7532600 13697000 585060 13243000 8090200 9731900 9581800 10318000 11430000 10549000 10791000 2 2 0 2 2 2 2 2 2 2 2 1594500000 565120000 1029400000 8559 2722 7976 45472;45473;45474 54984;54985;54986;54987 54986 4 IDLRPVLGEGVPILASFLR Unmodified 2064.2095 0.20954585 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 81.711 81.718 3 8.6206E-24 26764 20211116_3445_TMUAki_TMT10x_S_F6 167.45 144.57 5243400 7801000 37147 7531600 5082100 8259900 6070600 4608000 4909100 5034900 5517500 4881800 7278200 398540 7713400 4895600 8287600 6070000 4882200 5066600 4899800 5303700 3 3 1 3 3 3 3 3 3 3 3 3745100 5624100 37147 5687500 3764700 6764600 4255900 3548500 3629300 3704400 4174800 3486800 5248100 288350 5813800 3620700 6752600 4271900 3774800 3739000 3611500 4010400 2 2 1 2 2 2 2 2 2 2 2 1498300 2176900 0 1844000 1317400 1495300 1814600 1059500 1279800 1330500 1342700 1395000 2030000 110180 1899500 1274900 1535000 1798100 1107400 1327600 1288300 1293300 1 1 0 1 1 1 1 1 1 1 1 1937100000 273270000 1663800000 8560 2116 7977 45475;45476;45477 54988;54989;54990 54990 3 IDLRPVLGEGVPILASFLRK Unmodified 2192.3045 0.30450887 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 2 By matching By MS/MS 6.5 0.5 1 1 1 1 80.224 80.238 4 2.1885E-41 28352 20211116_3446_TMUAki_TMT10x_S_F7 208.92 183.97 8347600 12641000 138650 13099000 12317000 5275800 8687600 5155300 4586600 5480300 7563900 7773500 11797000 876890 13214000 11727000 5854500 8875000 5257300 4951200 5338900 7204500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8347600 12641000 138650 13099000 12317000 5275800 8687600 5155300 4586600 5480300 7563900 7773500 11797000 876890 13214000 11727000 5854500 8875000 5257300 4951200 5338900 7204500 1 1 1 1 1 1 1 1 1 1 1 3747500000 828850000 2918700000 8561 2116 7978 45478;45479 54991 54991 1 IDNLDVNR Unmodified 957.48796 0.48795855 336 O75475 PSIP1 PC4 and SFRS1-interacting protein yes yes 0 0 0 0 By MS/MS 3 0 1 1 37.911 37.937 2 0.043962 11117 20211116_3430_TMUAki_TMT10x_P_F3 64.654 6.2203 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8562 336 7979 45480 54992 54992 1 IDNSQVESGSLEDDWDFLPPK Unmodified 2390.0914 0.091400367 832 P27797 CALR Calreticulin yes yes 0 0 0 0 By MS/MS 2 0 1 1 78.734 78.703 3 8.0451E-05 27244 20211116_3429_TMUAki_TMT10x_P_F2 64.203 50.472 1734800 3252900 0 2908500 1814600 3141900 2110000 1672900 1527500 1620900 2377400 1615000 3034100 107910 2995000 1744900 3153400 2106800 1773500 1609600 1585200 2267100 1 1 0 1 1 1 1 1 1 1 1 1734800 3252900 0 2908500 1814600 3141900 2110000 1672900 1527500 1620900 2377400 1615000 3034100 107910 2995000 1744900 3153400 2106800 1773500 1609600 1585200 2267100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 667390000 667390000 0 8563 832 7980 45481 54993 54993 1 IDNSQVESGSLEDDWDFLPPKK Unmodified 2518.1864 0.18636339 832 P27797 CALR Calreticulin yes yes 0 0 0 1 By MS/MS By MS/MS 4.23 1.37 2 2 3 3 3 8 5 74.915 74.858 3;4 1.0338E-19 24562 20211116_3431_TMUAki_TMT10x_P_F4 153.21 132.32 61593000 102900000 814250 97829000 74354000 86720000 83367000 48601000 41179000 52237000 73470000 57353000 95998000 5859900 99994000 71558000 88173000 82786000 51447000 44885000 50868000 69874000 18 18 12 18 18 18 18 18 18 18 18 35187000 56917000 457030 53130000 37795000 60520000 50695000 27168000 22777000 29251000 40682000 32765000 53095000 3303100 54579000 36586000 60448000 49883000 29368000 25029000 28483000 38690000 10 10 8 10 10 10 10 10 10 10 10 26406000 45984000 357220 44699000 36560000 26200000 32672000 21433000 18402000 22986000 32788000 24588000 42903000 2556800 45415000 34972000 27725000 32902000 22079000 19856000 22385000 31184000 8 8 4 8 8 8 8 8 8 8 8 8457600000 4623300000 3834300000 8564 832 7981 45482;45483;45484;45485;45486;45487;45488;45489;45490;45491;45492;45493;45494 54994;54995;54996;54997;54998;54999;55000;55001;55002;55003;55004;55005;55006;55007;55008;55009;55010;55011;55012;55013;55014;55015 55002 22 IDNYIPIF Unmodified 993.51713 0.51713341 1312 P61421 ATP6V0D1 V-type proton ATPase subunit d 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.86 1.46 2 1 1 2 1 2 5 81.932 81.925 2 0.026926 26884 20211116_3445_TMUAki_TMT10x_S_F6 65.252 47.959 5334500 8951300 57985 8812900 7190000 7116300 7607600 5017000 4977500 5010500 6823500 4967100 8352000 486710 8975000 6905800 7307100 7613500 5206700 5244400 4893800 6525300 7 7 3 7 7 7 7 7 7 7 7 1049600 1629800 31784 1641200 1082500 2078300 1242600 1105700 1143700 1108300 1282700 977560 1520800 117100 1680000 1043900 2068500 1249000 1173400 1172800 1082300 1233100 1 1 1 1 1 1 1 1 1 1 1 4284900 7321500 26201 7171700 6107500 5038000 6365000 3911200 3833800 3902300 5540800 3989600 6831200 369610 7295000 5861900 5238700 6364500 4033300 4071600 3811500 5292200 6 6 2 6 6 6 6 6 6 6 6 851200000 172010000 679180000 8565 1312 7982 45495;45496;45497;45498;45499;45500;45501 55016;55017;55018;55019 55018 4 IDPTLCR Unmodified 873.43784 0.43783723 993 P41091;Q2VIR3;Q2VIR3-2 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 36.649 36.596 2 0.0017871 12264 20211116_3441_TMUAki_TMT10x_S_F3 133.47 18.883 1161100 1887500 6087.7 1899900 1399500 1344200 1227900 1440200 1389600 1261900 1677000 1081000 1761300 85453 1929000 1336700 1405800 1259500 1454100 1416800 1239800 1608900 4 4 2 4 4 4 4 4 4 4 4 222560 345530 1634.1 320350 434020 461510 298630 245740 236190 222590 306820 207230 322320 22385 330700 412820 456600 308060 260040 245520 218350 293790 2 2 1 2 2 2 2 2 2 2 2 938540 1542000 4453.6 1579500 965480 882660 929250 1194500 1153400 1039300 1370200 873760 1438900 63068 1598300 923860 949190 951420 1194100 1171300 1021500 1315100 2 2 1 2 2 2 2 2 2 2 2 63078000 3264600 59813000 8566 993 7983 45502;45503;45504;45505 55020;55021;55022;55023;55024 55023 5 IDPVNGQITTIAVLDRESPNVK Unmodified 2378.2805 0.28053854 727 P19022;P19022-2 CDH2 Cadherin-2 yes no 0 0 0 1 By MS/MS 6 0 1 1 66.633 66.618 3 9.0373E-18 20274 20211116_3434_TMUAki_TMT10x_P_F6 140.59 122.3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8567 727 7984 45506 55025 55025 1 IDQIEDLQDQLEDMMEDANEIQEALSR 2 Oxidation (M) 3222.418 0.41803217 3040 Q9NZZ3;Q9NZZ3-2 CHMP5 Charged multivesicular body protein 5 yes no 0 0 2 0 By MS/MS By matching 1 0 2 1 1 80.53 80.516 4 1.2081E-12 26488 20211116_3428_TMUAki_TMT10x_P_F1 110.78 103.5 1156000 1924800 19552 1816300 1097400 2613600 1399600 1372700 1505100 1536000 1771500 1076500 1795600 113240 1872500 1061000 2585500 1407100 1463200 1536000 1493400 1700700 1 1 1 1 1 1 1 1 1 1 1 1156000 1924800 19552 1816300 1097400 2613600 1399600 1372700 1505100 1536000 1771500 1076500 1795600 113240 1872500 1061000 2585500 1407100 1463200 1536000 1493400 1700700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1417900000 1006600000 411290000 8568 3040 7985 45507;45508 55026 55026 3087;3088 1 IDQLEGDHQLIQEALIFDNK Unmodified 2338.1805 0.18049015 644 P12814;P12814-2;P12814-3;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 78.271 78.203 3 9.1054E-07 27539 20211116_3430_TMUAki_TMT10x_P_F3 89.668 71.53 1946500 2838100 0 2409100 1800100 3537900 2148600 1808300 1859500 1905500 2381100 1811900 2646700 98212 2504900 1730800 3495700 2152200 1928700 1922900 1857000 2280800 1 1 0 1 1 1 1 1 1 1 1 1946500 2838100 0 2409100 1800100 3537900 2148600 1808300 1859500 1905500 2381100 1811900 2646700 98212 2504900 1730800 3495700 2152200 1928700 1922900 1857000 2280800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1492700000 1492700000 0 8569 644 7986 45509;45510 55027 55027 1 IDQVNQLLELDHQK Unmodified 1691.8842 0.88424855 1300 P61201;P61201-2 COPS2 COP9 signalosome complex subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 65.976 65.994 3 0.001475 20400 20211116_3445_TMUAki_TMT10x_S_F6 64.476 46.559 26676000 42530000 259240 47577000 32335000 42019000 28959000 25348000 26514000 28140000 29936000 24839000 39704000 2421900 48096000 30928000 42775000 29475000 26697000 27202000 27368000 28772000 3 3 2 3 3 3 3 3 3 3 3 19742000 31432000 259240 35167000 25152000 36091000 23099000 18946000 18890000 20846000 22105000 18384000 29343000 1954100 35626000 24081000 36325000 23408000 20185000 19515000 20281000 21225000 2 2 2 2 2 2 2 2 2 2 2 6934400 11098000 0 12410000 7183900 5928200 5859100 6401500 7624400 7294300 7830700 6455800 10360000 467760 12470000 6847700 6449700 6067100 6511400 7686600 7087200 7547600 1 1 0 1 1 1 1 1 1 1 1 1354200000 966750000 387400000 8570 1300 7987 45511;45512;45513 55028;55029;55030 55030 3 IDREGKPR Unmodified 969.53558 0.53557744 801 P25398 RPS12 40S ribosomal protein S12 yes yes 0 0 0 2 By MS/MS 5 0 1 1 26.495 26.42 3 0.028352 5193 20211116_3433_TMUAki_TMT10x_P_F5 66.27 34.336 86384 138180 4643.7 115690 89772 150240 87941 75053 81316 70499 108170 80467 128860 11537 120130 86313 149240 89093 79967 83968 69041 103510 1 1 1 1 1 1 1 1 1 1 1 86384 138180 4643.7 115690 89772 150240 87941 75053 81316 70499 108170 80467 128860 11537 120130 86313 149240 89093 79967 83968 69041 103510 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4310300 4310300 0 8571 801 7988 45514 55031 55031 1 IDRLDGAHAPELTK Unmodified 1534.8104 0.81035532 376 O76003 GLRX3 Glutaredoxin-3 yes yes 0 0 0 1 By MS/MS 6 0 1 1 42.601 42.642 4 0.013033 10500 20211116_3434_TMUAki_TMT10x_P_F6 57.414 36.705 929220 1284800 0 1639300 2093800 1985500 1088400 1032100 1080300 881230 1189400 865040 1200200 73368 1652500 1981100 1979900 1156300 1093000 1103300 866870 1144000 1 1 0 1 1 1 1 1 1 1 1 929220 1284800 0 1639300 2093800 1985500 1088400 1032100 1080300 881230 1189400 865040 1200200 73368 1652500 1981100 1979900 1156300 1093000 1103300 866870 1144000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 154280000 154280000 0 8572 376 7989 45515 55032 55032 1 IDSIPHLNNSTPLVDPSVYGYGVQK Unmodified 2712.3759 0.37589549 2494 Q96I24 FUBP3 Far upstream element-binding protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 74.153 74.096 4 3.0451E-17 24002 20211116_3436_TMUAki_TMT10x_P_F8 135.1 117.61 5805700 9807300 9142.4 8179900 6056800 9537700 6186300 6465400 6748700 6886800 7809900 5405700 9145200 483360 8480100 5810700 9563600 6285700 6741300 6878700 6708700 7501100 2 2 1 2 2 2 2 2 2 2 2 3206000 4732700 0 4534400 2963800 6095700 3212600 3084600 3489500 3723900 4028100 2985000 4415400 252400 4663200 2847400 6046000 3254300 3307300 3557000 3610600 3869100 1 1 0 1 1 1 1 1 1 1 1 2599700 5074600 9142.4 3645500 3093000 3442000 2973700 3380800 3259200 3162900 3781800 2420600 4729800 230960 3816900 2963300 3517600 3031400 3433900 3321700 3098100 3632000 1 1 1 1 1 1 1 1 1 1 1 2178300000 1158000000 1020300000 8573 2494 7990 45516;45517 55033;55034 55033 2 IDSVAAQPTATSPVVYTRPAISSFSSSGIGFGESLK Unmodified 3626.8468 0.84680699 1121 P49790;P49790-2;P49790-3 NUP153 Nuclear pore complex protein Nup153 yes no 0 0 0 1 By MS/MS 2 0 1 1 76.882 76.807 4 3.5041E-11 26461 20211116_3429_TMUAki_TMT10x_P_F2 95.56 83.638 1596000 2543900 10948 2080500 1269700 3133600 1540800 1647600 1657000 1665000 1902500 1486100 2372000 137960 2170900 1224900 3093900 1552300 1750700 1689300 1625400 1827700 1 1 1 1 1 1 1 1 1 1 1 1596000 2543900 10948 2080500 1269700 3133600 1540800 1647600 1657000 1665000 1902500 1486100 2372000 137960 2170900 1224900 3093900 1552300 1750700 1689300 1625400 1827700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1131100000 1131100000 0 8574 1121 7991 45518 55035 55035 1 IDTHNIIVNQLVFPDPEKPCK Unmodified 2476.2784 0.27843005 233 O43681 ASNA1 ATPase ASNA1 yes yes 0 0 0 1 By MS/MS By MS/MS 7.6 0.49 2 3 2 3 68.227 68.366 4;5 5.7242E-10 22929 20211116_3435_TMUAki_TMT10x_P_F7 106.49 93.038 16011000 26535000 358800 26114000 18105000 23019000 18034000 18522000 14531000 18022000 20240000 14910000 24758000 1627200 26624000 17375000 23540000 18188000 19044000 15139000 17622000 19348000 5 5 3 5 5 5 5 5 5 5 5 6330100 10362000 74903 10672000 6913400 12728000 7669400 8016200 5906300 7607000 8564100 5894200 9669700 570570 10896000 6650300 12734000 7685300 8375900 6180100 7446300 8179200 2 2 1 2 2 2 2 2 2 2 2 9681200 16173000 283900 15442000 11191000 10291000 10364000 10506000 8624800 10415000 11676000 9016000 15089000 1056600 15728000 10725000 10806000 10502000 10668000 8958700 10176000 11169000 3 3 2 3 3 3 3 3 3 3 3 2813400000 999740000 1813600000 8575 233 7992 45519;45520;45521;45522;45523 55036;55037;55038;55039;55040 55037 5 IDTIEIITDR Unmodified 1187.6398 0.63976774 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 By MS/MS By MS/MS 3 1.41 2 2 2 2 2 5 5 66.358 66.215 2 1.2331E-11 22151 20211116_3429_TMUAki_TMT10x_P_F2 216.42 169.34 150740000 236130000 1208800 256050000 164830000 202120000 166750000 144120000 147520000 157040000 181110000 140360000 220410000 13432000 259000000 158140000 207930000 168440000 149840000 152110000 152840000 173670000 13 13 8 13 13 13 13 13 13 13 13 67929000 104740000 489720 119910000 82664000 123740000 80595000 67622000 68919000 72844000 84642000 63250000 97787000 6109300 121310000 79228000 124560000 81498000 71742000 71182000 70928000 81165000 6 6 3 6 6 6 6 6 6 6 6 82814000 131400000 719090 136140000 82163000 78386000 86152000 76495000 78601000 84198000 96465000 77112000 122630000 7322300 137680000 78912000 83374000 86945000 78101000 80928000 81914000 92504000 7 7 5 7 7 7 7 7 7 7 7 29415000000 16119000000 13297000000 8576 772 7993 45524;45525;45526;45527;45528;45529;45530;45531;45532;45533 55041;55042;55043;55044;55045;55046;55047;55048;55049;55050;55051;55052;55053 55042 13 IDTRNELESYAYSLK Unmodified 1800.8894 0.8893935 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 1 By MS/MS By MS/MS 5.56 1.07 2 2 3 2 5 4 63.799 63.941 2;3 1.5644E-31 19190 20211116_3434_TMUAki_TMT10x_P_F6 226.23 191.85 114090000 187420000 1132100 181270000 159500000 204980000 133610000 178800000 162020000 158400000 163150000 106230000 174860000 10788000 185710000 152330000 206770000 137760000 182510000 163620000 155540000 157350000 15 15 12 15 15 15 15 15 15 15 15 70279000 108650000 462990 103640000 94996000 159120000 89483000 104840000 96281000 94010000 95384000 65437000 101370000 6242500 106920000 90952000 157460000 91265000 109010000 97620000 92261000 92042000 8 8 5 8 8 8 8 8 8 8 8 43806000 78769000 669140 77628000 64503000 45858000 44126000 73960000 65734000 64392000 67762000 40793000 73495000 4545300 78799000 61377000 49308000 46493000 73493000 65999000 63283000 65304000 7 7 7 7 7 7 7 7 7 7 7 16359000000 8022300000 8336600000 8577 614 7994 45534;45535;45536;45537;45538;45539;45540;45541;45542 55054;55055;55056;55057;55058;55059;55060;55061;55062;55063;55064;55065;55066;55067;55068 55059 15 IDVAFVDR Unmodified 933.49198 0.4919813 1821 Q15645 TRIP13 Pachytene checkpoint protein 2 homolog yes yes 0 0 0 0 By MS/MS 4 0 1 1 55.49 55.473 2 0.025511 17119 20211116_3442_TMUAki_TMT10x_S_F4 66.692 25.663 3320500 5709400 0 6177400 3553500 3051800 3480500 3963500 3751200 4006700 4576600 3091600 5329300 254870 6222100 3403900 3322300 3542600 3985100 3833700 3911300 4389300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3320500 5709400 0 6177400 3553500 3051800 3480500 3963500 3751200 4006700 4576600 3091600 5329300 254870 6222100 3403900 3322300 3542600 3985100 3833700 3911300 4389300 1 1 0 1 1 1 1 1 1 1 1 234610000 0 234610000 8578 1821 7995 45543 55069 55069 1 IDVAFVDRADIK Unmodified 1360.7351 0.73506511 1821 Q15645 TRIP13 Pachytene checkpoint protein 2 homolog yes yes 0 0 0 1 By MS/MS 5 0 1 1 59.314 59.433 3 0.026339 17380 20211116_3444_TMUAki_TMT10x_S_F5 57.267 26.04 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8579 1821 7996 45544 55070 55070 1 IDVGEAEPR Unmodified 984.48762 0.4876242 1219 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 37.212 37.155 2 3.0357E-05 10440 20211116_3429_TMUAki_TMT10x_P_F2 107.15 54.438 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8580 1219 7997 45545;45546;45547;45548 55071;55072;55073;55074 55072 4 IDVPANRYDLLCLEGLVR Unmodified 2115.1147 0.11465919 2941 Q9NSD9 FARSB Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 1 By MS/MS By MS/MS 7.25 0.829 1 1 2 1 3 77.273 77.289 3 5.3848E-33 27146 20211116_3446_TMUAki_TMT10x_S_F7 199.12 171.91 7462000 11046000 180950 11211000 9022800 8258400 9246000 6277500 5095600 6145200 8217100 6949200 10308000 809150 11382000 8668000 8550700 9238500 6478600 5476300 6007100 7830100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7462000 11046000 180950 11211000 9022800 8258400 9246000 6277500 5095600 6145200 8217100 6949200 10308000 809150 11382000 8668000 8550700 9238500 6478600 5476300 6007100 7830100 1 1 1 1 1 1 1 1 1 1 1 2378400000 0 2378400000 8581 2941 7998 45549;45550;45551;45552 55075;55076;55077 55076 3 IDVSVAAGHTDR Unmodified 1239.6208 0.62076364 1897 Q4V328;Q4V328-4 GRIPAP1 GRIP1-associated protein 1 yes no 0 0 0 0 By MS/MS 4 0 1 1 34.729 34.754 3 0.012628 8275 20211116_3431_TMUAki_TMT10x_P_F4 61.532 43.221 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8582 1897 7999 45553 55078 55078 1 IDVVVNNAGILR Unmodified 1281.7405 0.74048484 1161 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 0 By MS/MS 8 0 1 1 66.072 66.228 2 1.0657E-11 20714 20211116_3436_TMUAki_TMT10x_P_F8 133.23 92.038 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8583 1161 8000 45554 55079 55079 1 IDYIAGLDSR Unmodified 1121.5717 0.57168818 541 P07741;P07741-2 APRT Adenine phosphoribosyltransferase yes no 0 0 0 0 By MS/MS 5 0 1 1 60.119 60.225 2 0.011076 17584 20211116_3444_TMUAki_TMT10x_S_F5 65.347 31.269 4799300 7649100 158290 7848600 4782500 5349000 4492200 6551300 6475400 6388300 6690100 4469800 7138100 545170 7955400 4588000 5630400 4633300 6595400 6508500 6245900 6447100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4799300 7649100 158290 7848600 4782500 5349000 4492200 6551300 6475400 6388300 6690100 4469800 7138100 545170 7955400 4588000 5630400 4633300 6595400 6508500 6245900 6447100 1 1 1 1 1 1 1 1 1 1 1 275310000 0 275310000 8584 541 8001 45555 55080 55080 1 IEAEEAIK Unmodified 901.47566 0.47566253 815;1717 P26378;P26378-4;P26378-2;P26378-5;P26378-1;P26378-3;Q12926;Q12926-2;Q14576-2;Q14576 ELAVL4;ELAVL2;ELAVL3 ELAV-like protein 4;ELAV-like protein 2;ELAV-like protein 3 no no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 43.428 43.34 2 0.00041005 11572 20211116_3440_TMUAki_TMT10x_S_F2 141.39 72.474 3786100 6533500 27780 5867800 5540600 5225500 4363800 4292200 4742100 4202000 5397800 3525500 6094000 363290 6023500 5284600 5342100 4499700 4408400 4831000 4107600 5186700 3 3 2 3 3 3 3 3 3 3 3 1209400 1994400 13960 1868300 2215900 2615100 1509600 1297400 1432200 1225300 1548800 1126100 1860500 127370 1926000 2107800 2588400 1565800 1383500 1464500 1199600 1490500 1 1 1 1 1 1 1 1 1 1 1 2576800 4539100 13820 3999500 3324800 2610500 2854200 2994700 3309900 2976700 3849000 2399300 4233400 235920 4097500 3176900 2753700 2933900 3024900 3366400 2908000 3696300 2 2 1 2 2 2 2 2 2 2 2 172170000 64962000 107210000 8585 815;1717 8002 45556;45557;45558;45559 55081;55082;55083;55084 55083 4 IEANEALVK Unmodified 985.54441 0.5444108 863 P30049 ATP5D ATP synthase subunit delta, mitochondrial yes yes 0 0 0 0 By matching By MS/MS 3 0 2 1 1 47.053 46.877 2 0.00081852 15893 20211116_3441_TMUAki_TMT10x_S_F3 111.06 62.264 1541500 2616600 0 2757400 1557600 1395700 1491900 1616800 1741500 1513200 1967400 1435300 2442100 125660 2782700 1491700 1510800 1524500 1629600 1768800 1482100 1890900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1541500 2616600 0 2757400 1557600 1395700 1491900 1616800 1741500 1513200 1967400 1435300 2442100 125660 2782700 1491700 1510800 1524500 1629600 1768800 1482100 1890900 1 1 0 1 1 1 1 1 1 1 1 123310000 63459000 59847000 8586 863 8003 45560;45561 55085 55085 1 IECGPKYPEAPPFVR Unmodified 1758.8763 0.8763264 1627 Q13404;Q13404-7;Q13404-2;Q13404-1;Q13404-6 UBE2V1 Ubiquitin-conjugating enzyme E2 variant 1 yes no 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 52.633 53.071 3 1.0523E-06 17050 20211116_3446_TMUAki_TMT10x_S_F7 112.34 98.592 20445000 31930000 112860 33262000 31796000 37078000 22223000 32916000 28602000 26171000 29342000 19037000 29799000 1881500 33896000 30249000 37443000 23240000 33475000 28845000 25837000 28282000 4 4 1 4 4 4 4 4 4 4 4 11863000 17954000 0 18844000 20205000 29472000 15298000 18799000 16215000 14927000 16672000 11045000 16756000 1038000 19320000 19246000 29128000 15803000 19536000 16472000 14738000 16069000 2 2 0 2 2 2 2 2 2 2 2 8581800 13976000 112860 14418000 11592000 7605900 6924600 14117000 12387000 11244000 12670000 7991300 13043000 843460 14576000 11003000 8314900 7437100 13939000 12372000 11100000 12213000 2 2 1 2 2 2 2 2 2 2 2 3284600000 1349900000 1934700000 8587 1627 8004 45562;45563;45564 55086;55087;55088;55089 55089 4 IEDFLER Unmodified 920.46035 0.46034682 1054 P46781 RPS9 40S ribosomal protein S9 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 61.016 60.694 2 0.050013 20409 20211116_3430_TMUAki_TMT10x_P_F3 69.105 26.191 44432000 72234000 11834 70107000 55954000 70702000 52906000 52106000 52420000 48937000 58427000 41369000 67394000 3663600 71680000 53563000 71572000 53809000 53822000 53563000 47925000 56177000 4 4 1 4 4 4 4 4 4 4 4 25257000 41148000 11834 36695000 37529000 54430000 33008000 32976000 33373000 31438000 34234000 23517000 38379000 2270700 38015000 35871000 53874000 33729000 34565000 33966000 30767000 32997000 2 2 1 2 2 2 2 2 2 2 2 19174000 31086000 0 33412000 18425000 16272000 19898000 19130000 19047000 17499000 24194000 17852000 29015000 1392900 33665000 17692000 17698000 20080000 19257000 19597000 17158000 23179000 2 2 0 2 2 2 2 2 2 2 2 1927500000 1446800000 480720000 8588 1054 8005 45565;45566;45567 55090;55091 55091 2 IEDFLERR Unmodified 1076.5615 0.56145784 1054 P46781 RPS9 40S ribosomal protein S9 yes yes 0 0 0 1 By MS/MS By MS/MS 3.83 0.687 2 3 1 3 3 51.09 51.089 3 0.00023181 17605 20211116_3441_TMUAki_TMT10x_S_F3 141.2 90.589 5694900 8405700 84132 11508000 10501000 9480500 6482500 8950200 9902300 8284500 9145400 5303100 7855000 617870 11491000 9973400 9771200 6891500 9106800 9897400 8118500 8845700 4 4 4 4 4 4 4 4 4 4 4 2612300 3859900 45070 5255100 8840600 7297000 3986900 4310300 4742800 3901600 4194100 2432700 3606900 345820 5293000 8357500 7240700 4321300 4520900 4772400 3827300 4062900 2 2 2 2 2 2 2 2 2 2 2 3082500 4545800 39062 6252900 1660900 2183400 2495600 4639900 5159500 4382900 4951300 2870400 4248100 272060 6197500 1615900 2530600 2570200 4585900 5125000 4291200 4782800 2 2 2 2 2 2 2 2 2 2 2 1108800000 664950000 443820000 8589 1054 8006 45568;45569;45570;45571;45572;45573 55092;55093;55094;55095;55096 55095 5 IEDLSQQAQLAAAEK Unmodified 1613.8261 0.82606496 59 E9PAV3;Q13765;E9PAV3-2 NACA Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha yes no 0 0 0 0 By MS/MS By MS/MS 4.12 1.28 2 4 4 4 3 10 7 61.909 61.845 2;3 2.2953E-85 18391 20211116_3444_TMUAki_TMT10x_S_F5 348.78 276.13 73613000 114620000 519390 149310000 111910000 117360000 77506000 92514000 96605000 79579000 99920000 68541000 107080000 6657800 149390000 106440000 120970000 81008000 94928000 97561000 78254000 96287000 16 16 7 16 16 16 16 16 16 16 16 40735000 62692000 282370 80250000 88153000 95254000 55507000 51528000 52716000 44860000 55183000 37928000 58564000 3996000 80853000 83702000 95130000 57924000 54397000 53839000 44087000 53157000 9 9 4 9 9 9 9 9 9 9 9 32878000 51928000 237020 69057000 23754000 22109000 21999000 40986000 43888000 34719000 44737000 30613000 48519000 2661800 68538000 22736000 25843000 23084000 40531000 43721000 34167000 43130000 7 7 3 7 7 7 7 7 7 7 7 13071000000 7839500000 5231200000 8590 59 8007 45574;45575;45576;45577;45578;45579;45580;45581;45582;45583;45584;45585;45586;45587;45588;45589;45590 55097;55098;55099;55100;55101;55102;55103;55104;55105;55106;55107;55108;55109;55110;55111;55112;55113;55114;55115;55116 55116 20 IEDRLPELEQLER Unmodified 1638.8577 0.85769944 3019 Q9NYH9 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes yes 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 58.931 58.68 3 0.012668 19145 20211116_3429_TMUAki_TMT10x_P_F2 57.794 38.735 4908200 7524200 129080 7410300 5789700 8497800 6000300 5300600 4900100 4232400 5985800 4571000 7020400 539570 7584000 5564600 8518000 6041300 5518700 5071700 4177600 5740700 1 1 1 1 1 1 1 1 1 1 1 4908200 7524200 129080 7410300 5789700 8497800 6000300 5300600 4900100 4232400 5985800 4571000 7020400 539570 7584000 5564600 8518000 6041300 5518700 5071700 4177600 5740700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 531620000 531620000 0 8591 3019 8008 45591;45592 55117 55117 1 IEDVTPIPSDSTR Unmodified 1428.7096 0.70963822 1343 P62263 RPS14 40S ribosomal protein S14 yes yes 0 0 0 0 By MS/MS By MS/MS 2.75 0.433 1 3 2 2 50.915 50.674 2;3 4.6778E-19 17351 20211116_3441_TMUAki_TMT10x_S_F3 190.57 152.87 5200800 8400400 26575 10608000 12235000 11014000 6680500 5938600 7655500 5066600 7953100 4842000 7846800 470110 10672000 11588000 11081000 7097000 6268000 7756000 4984300 7662800 4 4 1 4 4 4 4 4 4 4 4 3783900 5996200 26575 7321300 10983000 9934400 5456300 4340600 5510900 3715000 5596900 3523000 5600000 393860 7414400 10391000 9833600 5825200 4676800 5607100 3654000 5396500 3 3 1 3 3 3 3 3 3 3 3 1416900 2404300 0 3286900 1251900 1079500 1224300 1597900 2144600 1351700 2356200 1318900 2246800 76246 3257800 1197200 1247500 1271800 1591100 2148900 1330200 2266300 1 1 0 1 1 1 1 1 1 1 1 747640000 586580000 161060000 8592 1343 8009 45593;45594;45595;45596 55118;55119;55120;55121;55122 55121 5 IEDVTPIPSDSTRR Unmodified 1584.8107 0.81074925 1343 P62263 RPS14 40S ribosomal protein S14 yes yes 0 0 0 1 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 42.181 42.302 3 2.4671E-19 11362 20211116_3431_TMUAki_TMT10x_P_F4 174.72 154.98 4625900 7420000 46875 8354400 9534900 8536500 5569400 5963200 6412000 5133000 6644200 4307500 6927200 489710 8459600 9045300 8627400 5882700 6168000 6494400 5047400 6402200 5 5 3 5 5 5 5 5 5 5 5 3125100 4797600 23473 5474500 8051500 7155600 4090000 3986200 4105700 3325900 4207400 2909900 4479200 344390 5562200 7621600 7114800 4356300 4193100 4179800 3275400 4055600 3 3 2 3 3 3 3 3 3 3 3 1500800 2622500 23401 2879900 1483400 1380900 1479400 1977000 2306300 1807200 2436700 1397500 2448000 145320 2897400 1423600 1512600 1526400 1974900 2314700 1772000 2346600 2 2 1 2 2 2 2 2 2 2 2 1018500000 700870000 317600000 8593 1343 8010 45597;45598;45599;45600 55123;55124;55125;55126;55127 55125 5 IEEDFPHIR Unmodified 1154.572 0.57202253 2945 Q9NTI5;Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 46.667 46.456 3 0.00028246 15697 20211116_3441_TMUAki_TMT10x_S_F3 112.8 94.534 3392400 5328200 43013 6080800 5273000 5033000 3681600 4056800 4108400 3709900 4713900 3158900 4974600 342630 6134600 5018300 5170000 3830800 4163600 4182400 3637600 4528600 4 4 3 4 4 4 4 4 4 4 4 1653500 2485500 35486 3003800 3595000 3520300 2134600 1961100 1913900 1744800 2210600 1539800 2321200 197350 3035500 3412500 3519300 2234700 2066200 1967300 1713000 2123300 2 2 2 2 2 2 2 2 2 2 2 1738900 2842800 7527.2 3077000 1678000 1512800 1547100 2095700 2194500 1965100 2503300 1619100 2653500 145280 3099100 1605800 1650700 1596100 2097400 2215100 1924600 2405200 2 2 1 2 2 2 2 2 2 2 2 322720000 196210000 126510000 8594 2945 8011 45601;45602;45603 55128;55129;55130;55131 55130 4 IEEELGDEAR Unmodified 1159.5357 0.5356966 568 P09104;P09104-2 ENO2 Gamma-enolase yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 42.476 42.385 2 1.036E-18 12942 20211116_3439_TMUAki_TMT10x_S_F1 243.03 142.88 2734000 4584200 3244.8 4794600 5666300 4080400 3176800 3067000 3208500 2727300 4108200 2545200 4278400 216650 4865700 5367200 4178100 3353500 3159300 3294600 2677600 3935200 3 3 1 3 3 3 3 3 3 3 3 1363700 2152200 0 2340300 4053300 2880600 1722600 1342700 1427100 1321000 1941800 1269400 2009000 105180 2382300 3825000 2866700 1860000 1442200 1483000 1291000 1857200 1 1 0 1 1 1 1 1 1 1 1 1370300 2432000 3244.8 2454300 1613000 1199800 1454200 1724300 1781400 1406300 2166500 1275800 2269400 111480 2483500 1542300 1311400 1493500 1717100 1811600 1386600 2078000 2 2 1 2 2 2 2 2 2 2 2 220410000 153380000 67022000 8595 568 8012 45604;45605 55132;55133;55134 55134 3 IEEELGSK Unmodified 903.45493 0.45492709 520 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 2 3 45.279 45.107 2 0.00043998 13611 20211116_3429_TMUAki_TMT10x_P_F2 149.65 111.42 18073000 29939000 269650 25269000 21635000 23161000 21761000 14479000 15211000 14688000 20818000 16829000 27919000 1767100 26077000 20762000 23530000 21863000 15166000 15960000 14337000 19909000 6 6 4 6 6 6 6 6 6 6 6 9590800 15052000 80053 12713000 11318000 15475000 10725000 7603200 8064000 7817100 10678000 8930300 14037000 861460 13176000 10840000 15418000 10827000 8134100 8412900 7625700 10220000 3 3 1 3 3 3 3 3 3 3 3 8482000 14887000 189590 12556000 10317000 7685800 11036000 6875800 7146700 6871400 10140000 7899000 13882000 905610 12901000 9921800 8111900 11036000 7031600 7547000 6711200 9688800 3 3 3 3 3 3 3 3 3 3 3 1011600000 587640000 424000000 8596 520 8013 45606;45607;45608;45609;45610 55135;55136;55137;55138;55139;55140 55135 6 IEEGTYGVVYR Unmodified 1284.635 0.63501672 751 P21127;Q9UQ88;P21127-4;P21127-5;P21127-10;P21127-6;Q9UQ88-4;P21127-8;Q9UQ88-3;P21127-3;Q9UQ88-10;P21127-12;Q9UQ88-2;P21127-2;P21127-9;Q9UQ88-5;Q9UQ88-9 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A yes no 0 0 0 0 By MS/MS 3 0 1 1 48.29 48.241 2 0.0029726 15296 20211116_3430_TMUAki_TMT10x_P_F3 77.049 51.474 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8597 751 8014 45611 55141 55141 1 IEEIKDFLLTAR Unmodified 1446.8082 0.80823006 1401 P63173 RPL38 60S ribosomal protein L38 yes yes 0 0 0 1 By matching By MS/MS 8 0 2 1 1 78.767 78.755 3 0.093096 25314 20211116_3447_TMUAki_TMT10x_S_F8 35.711 21.02 4484400 7628300 20577 7233300 5001500 4335200 5697900 4344700 4093200 4685800 5547400 4175600 7116600 398210 7363700 4814500 4595400 5693600 4427100 4285900 4562300 5306300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4484400 7628300 20577 7233300 5001500 4335200 5697900 4344700 4093200 4685800 5547400 4175600 7116600 398210 7363700 4814500 4595400 5693600 4427100 4285900 4562300 5306300 1 1 1 1 1 1 1 1 1 1 1 1055600000 530440000 525160000 8598 1401 8015 45612;45613 55142 55142 1 IEELQLIVNDK Unmodified 1312.7238 0.72383172 1337 P62195;P62195-2 PSMC5 26S protease regulatory subunit 8 yes no 0 0 0 0 By MS/MS 4 0 1 1 76.576 76.599 2 6.8038E-06 25305 20211116_3431_TMUAki_TMT10x_P_F4 119.45 65.977 4743100 7952600 30714 7318600 5164900 8886200 6363200 4438800 4622500 4797300 5677100 4416500 7418200 427770 7534400 4984400 8856100 6338000 4748200 4816200 4670500 5443900 1 1 1 1 1 1 1 1 1 1 1 4743100 7952600 30714 7318600 5164900 8886200 6363200 4438800 4622500 4797300 5677100 4416500 7418200 427770 7534400 4984400 8856100 6338000 4748200 4816200 4670500 5443900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 575910000 575910000 0 8599 1337 8016 45614 55143 55143 1 IEEPSPIVYSLPAPELPEAFFGTPISK Unmodified 2927.5208 0.52082839 2329 Q8WYP5;Q8WYP5-2;Q8WYP5-3 AHCTF1 Protein ELYS yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 81.686 81.702 4 1.325E-12 28961 20211116_3446_TMUAki_TMT10x_S_F7 112.13 90.53 2291400 4080000 26109 3541700 2827700 3347300 2951200 2060900 2253600 2342200 2635000 2133700 3805100 221810 3648200 2716000 3393100 2965500 2168700 2336700 2275900 2530100 3 3 3 3 3 3 3 3 3 3 3 929370 1472400 7129.4 1374900 950230 1773600 1076800 836070 862200 1028300 1054400 865390 1373600 83988 1415400 914740 1761200 1079000 903130 893360 996410 1011200 1 1 1 1 1 1 1 1 1 1 1 1362000 2607600 18980 2166800 1877500 1573700 1874400 1224800 1391400 1313900 1580600 1268300 2431500 137830 2232800 1801300 1631900 1886500 1265500 1443300 1279500 1518900 2 2 2 2 2 2 2 2 2 2 2 769510000 292670000 476840000 8600 2329 8017 45615;45616;45617 55144;55145;55146 55146 3 IEESIDRVYSLDDIRR Unmodified 1978.012 0.011968255 1716 Q14566 MCM6 DNA replication licensing factor MCM6 yes yes 0 0 0 2 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 57.153 57.052 4 2.0867E-42 17253 20211116_3431_TMUAki_TMT10x_P_F4 220.97 186.7 10680000 17661000 136100 18735000 12852000 12639000 10281000 14673000 12897000 12194000 14206000 9945100 16484000 1015200 18946000 12265000 13297000 10644000 14741000 13052000 12012000 13663000 4 4 3 4 4 4 4 4 4 4 4 3314000 4846700 30275 5196600 4242000 5832900 3638800 4377500 3720600 3436300 3918800 3085900 4523800 315970 5286200 4054100 5870200 3725100 4496000 3788500 3394900 3774200 1 1 1 1 1 1 1 1 1 1 1 7366200 12814000 105820 13539000 8610400 6805800 6642000 10295000 9176000 8758100 10287000 6859200 11960000 699270 13660000 8211200 7427000 6918700 10245000 9263500 8616900 9889000 3 3 2 3 3 3 3 3 3 3 3 2111200000 916230000 1194900000 8601 1716 8018 45618;45619;45620 55147;55148;55149;55150 55147 4 IEEVPELPLVVEDKVEGYK Unmodified 2184.1566 0.15656681 953 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 78.459 78.408 3 0.0042185 28614 20211116_3441_TMUAki_TMT10x_S_F3 58.073 43.911 2782400 4760500 0 4324800 3393400 3581600 3483100 2641200 2662300 3145400 3903800 2590100 4440400 166210 4431700 3251200 3673400 3502900 2747900 2788400 3051200 3727400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2782400 4760500 0 4324800 3393400 3581600 3483100 2641200 2662300 3145400 3903800 2590100 4440400 166210 4431700 3251200 3673400 3502900 2747900 2788400 3051200 3727400 1 1 0 1 1 1 1 1 1 1 1 1347500000 0 1347500000 8602 953 8019 45621;45622 55151 55151 1 IEEVPELPLVVEDKVEGYKK Unmodified 2312.2515 0.25152982 953 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 0 2 By MS/MS By MS/MS 5.23 1.89 1 2 2 2 2 2 2 7 6 77.075 77.056 4 2.5256E-24 24611 20211116_3444_TMUAki_TMT10x_S_F5 170.19 161.7 145010000 238800000 1363200 228200000 150880000 208840000 175360000 146530000 136900000 159330000 174570000 135030000 222780000 13297000 233260000 145360000 212550000 175400000 152510000 142300000 155080000 167240000 12 12 8 12 12 12 12 12 12 12 12 58226000 94803000 747560 91946000 63152000 116640000 75326000 58297000 55361000 64456000 69802000 54220000 88451000 5570200 94371000 60903000 115990000 75152000 62401000 57707000 62698000 66889000 5 5 4 5 5 5 5 5 5 5 5 86783000 143990000 615670 136260000 87729000 92210000 100030000 88235000 81542000 94871000 104770000 80807000 134330000 7727100 138890000 84462000 96565000 100250000 90111000 84589000 92383000 100350000 7 7 4 7 7 7 7 7 7 7 7 34843000000 19106000000 15737000000 8603 953 8020 45623;45624;45625;45626;45627;45628;45629;45630;45631;45632;45633;45634;45635 55152;55153;55154;55155;55156;55157;55158;55159;55160;55161;55162;55163 55159 12 IEFEQNLAANEQAGPINR Unmodified 2012.9916 0.99156716 310 O75150;O75150-3;O75150-4 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 58 57.885 3 2.8644E-15 18074 20211116_3442_TMUAki_TMT10x_S_F4 127.88 101.76 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8604 310 8021 45636;45637;45638 55164;55165;55166 55166 3 IEFEQTLAANEQAGPINR Unmodified 1999.9963 0.99631819 1950 Q5VTR2 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 61.346 61.221 3 4.2727E-06 19458 20211116_3442_TMUAki_TMT10x_S_F4 92.178 79.06 2856000 5339100 43647 4573900 3294800 3449000 3584300 3417600 2795600 2936600 3800900 2659500 4979100 283600 4703300 3169100 3582300 3596100 3462000 2914300 2887900 3635500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2856000 5339100 43647 4573900 3294800 3449000 3584300 3417600 2795600 2936600 3800900 2659500 4979100 283600 4703300 3169100 3582300 3596100 3462000 2914300 2887900 3635500 1 1 1 1 1 1 1 1 1 1 1 357180000 0 357180000 8605 1950 8022 45639;45640 55167;55168 55167 2 IEFGVDEVIEPSDTLPR Unmodified 1914.9575 0.95747307 1729 Q14694;Q14694-3;Q14694-2 USP10 Ubiquitin carboxyl-terminal hydrolase 10 yes no 0 0 0 0 By MS/MS By matching 1 0 2 1 1 76.87 76.839 3 1.9647E-06 24989 20211116_3428_TMUAki_TMT10x_P_F1 100.58 83.088 1493900 2583700 37691 2455800 1784000 3001900 1838300 1758500 1708000 1767200 1972100 1391200 2410400 163040 2522500 1714200 2996500 1857800 1850900 1752700 1725600 1894300 1 1 1 1 1 1 1 1 1 1 1 1493900 2583700 37691 2455800 1784000 3001900 1838300 1758500 1708000 1767200 1972100 1391200 2410400 163040 2522500 1714200 2996500 1857800 1850900 1752700 1725600 1894300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 441600000 257150000 184450000 8606 1729 8023 45641;45642 55169 55169 1 IEFGVDVTTK Unmodified 1107.5812 0.58119023 767 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 0 0 By MS/MS By MS/MS 4.36 1.34 1 2 4 4 3 7 7 61.582 61.561 2;3 2.3552E-09 19573 20211116_3442_TMUAki_TMT10x_S_F4 179.8 108.3 94036000 152240000 319780 156100000 116330000 136010000 110050000 97240000 88779000 96641000 118450000 87555000 142070000 7813000 158680000 111370000 138920000 111300000 100810000 92302000 94410000 113350000 13 13 5 13 13 13 13 13 13 13 13 47626000 74717000 272230 76984000 57678000 91313000 59018000 48712000 43815000 48910000 58363000 44345000 69727000 4213700 78590000 55346000 91182000 59324000 51683000 45756000 47760000 55850000 6 6 3 6 6 6 6 6 6 6 6 46411000 77524000 47550 79120000 58656000 44694000 51036000 48528000 44964000 47732000 60091000 43209000 72344000 3599300 80088000 56023000 47741000 51978000 49123000 46546000 46650000 57500000 7 7 2 7 7 7 7 7 7 7 7 12108000000 6415100000 5692900000 8607 767 8024 45643;45644;45645;45646;45647;45648;45649;45650;45651;45652;45653;45654;45655;45656 55170;55171;55172;55173;55174;55175;55176;55177;55178;55179;55180;55181;55182;55183;55184 55180 15 IEFMSQLHQIQEIK Oxidation (M) 1758.8975 0.89745577 3386 yes no 0 0 1 0 By MS/MS 5 0 1 1 56.222 56.371 3 0.0496 16121 20211116_3444_TMUAki_TMT10x_S_F5 42.568 22.73 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8608 3386 8025 45657 55185 55185 3312 1 IEFSLPDLEGR Unmodified 1274.6507 0.65066678 945 P35998;P35998-2 PSMC2 26S protease regulatory subunit 7 yes no 0 0 0 0 By MS/MS 4 0 1 1 76.204 76.137 2 5.5882E-06 25554 20211116_3442_TMUAki_TMT10x_S_F4 120.22 93.839 2590400 4600000 64139 4189900 3903100 3198300 3339400 2687600 2526800 2918200 3257200 2412400 4290800 292920 4288600 3732200 3307900 3391600 2765300 2632100 2840600 3119500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2590400 4600000 64139 4189900 3903100 3198300 3339400 2687600 2526800 2918200 3257200 2412400 4290800 292920 4288600 3732200 3307900 3391600 2765300 2632100 2840600 3119500 1 1 1 1 1 1 1 1 1 1 1 257730000 0 257730000 8609 945 8026 45658 55186 55186 1 IEGDMIVCAAYAHELPK Oxidation (M) 1931.9121 0.91211956 1051 P46777 RPL5 60S ribosomal protein L5 yes yes 0 0 1 0 By MS/MS By MS/MS 3.77 1.37 3 3 3 2 2 7 6 58.879 58.779 3;4 2.9379E-11 18416 20211116_3442_TMUAki_TMT10x_S_F4 134.44 107.41 80554000 142520000 636010 141770000 104600000 139980000 86415000 110050000 99751000 107640000 103530000 75005000 132990000 7185800 144650000 99853000 142040000 89018000 113330000 101030000 105230000 99758000 20 20 14 20 20 20 20 20 20 20 20 44929000 79317000 402970 76766000 65448000 106430000 57296000 60399000 55740000 60295000 55545000 41834000 74001000 4091000 78937000 62555000 105560000 58496000 63729000 56767000 58892000 53588000 11 11 8 11 11 11 11 11 11 11 11 35624000 63205000 233050 65001000 39156000 33551000 29119000 49654000 44011000 47347000 47988000 33171000 58984000 3094800 65715000 37298000 36482000 30523000 49603000 44263000 46336000 46170000 9 9 6 9 9 9 9 9 9 9 9 22487000000 12615000000 9872300000 8610 1051 8027 45659;45660;45661;45662;45663;45664;45665;45666;45667;45668;45669;45670;45671 55187;55188;55189;55190;55191;55192;55193;55194;55195;55196;55197;55198;55199;55200;55201;55202;55203;55204;55205;55206 55201 1355 20 IEGDMIVCAAYAHELPK Unmodified 1915.9172 0.91720493 1051 P46777 RPL5 60S ribosomal protein L5 yes yes 0 0 0 0 By MS/MS By MS/MS 4.62 1.62 2 2 4 3 2 3 7 9 65.31 65.282 3;4 1.0002E-15 20602 20211116_3431_TMUAki_TMT10x_P_F4 152.68 133.6 58886000 96755000 820980 111900000 68112000 65130000 64483000 34033000 27721000 37514000 60347000 54833000 90339000 5493300 112390000 65249000 68536000 64460000 36276000 30968000 36495000 57205000 15 15 10 15 15 15 15 15 15 15 15 25462000 43237000 440260 49256000 30373000 39695000 33893000 14627000 11325000 15599000 23896000 23710000 40367000 2571300 49681000 29237000 40465000 33497000 16166000 12955000 15194000 22662000 6 6 4 6 6 6 6 6 6 6 6 33424000 53518000 380720 62643000 37738000 25434000 30590000 19406000 16396000 21915000 36451000 31122000 49972000 2922000 62705000 36011000 28070000 30963000 20110000 18013000 21300000 34543000 9 9 6 9 9 9 9 9 9 9 9 13176000000 6281500000 6895000000 8611 1051 8027 45672;45673;45674;45675;45676;45677;45678;45679;45680;45681;45682;45683;45684;45685;45686;45687 55207;55208;55209;55210;55211;55212;55213;55214;55215;55216;55217;55218;55219;55220;55221;55222;55223;55224 55209 18 IEGLQNLVNLR Unmodified 1267.7248 0.72483478 1807 Q15435;Q15435-2;Q15435-5;Q15435-4;Q15435-3 PPP1R7 Protein phosphatase 1 regulatory subunit 7 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 1 1 1 1 71.803 71.674 2 3.4819E-14 24861 20211116_3439_TMUAki_TMT10x_S_F1 180.67 144.12 6838000 12183000 83125 12170000 7435400 7719900 7907800 7814300 7488900 7868300 8831400 6367200 11368000 618720 12349000 7144100 8141100 7983600 7941900 7684700 7682400 8477800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6838000 12183000 83125 12170000 7435400 7719900 7907800 7814300 7488900 7868300 8831400 6367200 11368000 618720 12349000 7144100 8141100 7983600 7941900 7684700 7682400 8477800 2 2 1 2 2 2 2 2 2 2 2 400280000 0 400280000 8612 1807 8028 45688;45689 55225;55226;55227 55226 3 IEGVYARDETEFYLGK Unmodified 1888.9207 0.92069363 714 P18077 RPL35A 60S ribosomal protein L35a yes yes 0 0 0 1 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 63.51 63.489 3 5.142E-21 20409 20211116_3442_TMUAki_TMT10x_S_F4 161.26 136.73 13751000 23721000 78186 23856000 15152000 16231000 14274000 13081000 12193000 13020000 16353000 12804000 22134000 1232600 24214000 14511000 16935000 14460000 13457000 12643000 12719000 15647000 3 3 3 3 3 3 3 3 3 3 3 4351300 6873400 32328 7571800 4759400 7416800 4773100 3833400 3590600 4122300 4772200 4051700 6416200 396600 7672800 4565800 7484800 4804200 4087100 3746500 4014100 4567000 1 1 1 1 1 1 1 1 1 1 1 9400000 16847000 45858 16285000 10393000 8814600 9500900 9247600 8602100 8897800 11581000 8752600 15718000 835960 16541000 9945200 9450200 9655900 9370000 8896200 8704500 11080000 2 2 2 2 2 2 2 2 2 2 2 1329200000 785200000 544050000 8613 714 8029 45690;45691;45692 55228;55229;55230;55231 55229 4 IEGVYARDETEFYLGKR Unmodified 2045.0218 0.02180466 714 P18077 RPL35A 60S ribosomal protein L35a yes yes 0 0 0 2 By MS/MS By MS/MS 5.5 1.12 2 2 2 2 4 4 54.848 55.089 4 6.4682E-43 17867 20211116_3446_TMUAki_TMT10x_S_F7 226.74 207.06 92478000 157020000 1517100 165080000 122430000 118570000 91039000 105530000 86990000 92054000 112140000 86115000 146540000 9222000 167140000 116680000 123360000 93861000 107550000 89567000 90460000 107390000 10 10 6 10 10 10 10 10 10 10 10 33492000 58455000 753740 60548000 46327000 70386000 41638000 40335000 34124000 34219000 42121000 31189000 54553000 3558000 61769000 44341000 70423000 42248000 42343000 35328000 33672000 40385000 4 4 2 4 4 4 4 4 4 4 4 58985000 98562000 763370 104530000 76103000 48181000 49401000 65195000 52866000 57835000 70014000 54926000 91991000 5664000 105370000 72334000 52942000 51613000 65207000 54239000 56788000 67010000 6 6 4 6 6 6 6 6 6 6 6 11829000000 6249400000 5579700000 8614 714 8030 45693;45694;45695;45696;45697;45698;45699;45700 55232;55233;55234;55235;55236;55237;55238;55239;55240;55241 55240 10 IEGYEDQVLITEHGDLGNSR Unmodified 2244.0659 0.065854319 1192 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.894 2 1 2 3 2 57.188 57.037 3 1.6446E-24 16918 20211116_3428_TMUAki_TMT10x_P_F1 166.21 156.29 3871900 6512500 11312 7160100 4432900 5376200 4041100 4851200 4987900 4707700 5540800 3604600 6079200 270610 7232100 4236800 5575100 4148900 4954600 5052600 4603700 5327900 3 3 1 3 3 3 3 3 3 3 3 1265800 2040900 0 2419800 1557400 2945100 1694100 1581600 1762200 1511200 1804200 1178300 1905800 66342 2449600 1494000 2937300 1713300 1674800 1791200 1478800 1739100 1 1 0 1 1 1 1 1 1 1 1 2606100 4471500 11312 4740300 2875500 2431000 2347100 3269700 3225800 3196500 3736700 2426400 4173400 204270 4782400 2742800 2637900 2435600 3279800 3261300 3124800 3588800 2 2 1 2 2 2 2 2 2 2 2 641800000 338550000 303250000 8615 1192 8031 45701;45702;45703;45704;45705 55242;55243;55244;55245;55246;55247 55242 6 IEHSFWR Unmodified 973.477 0.47699993 1847 Q16531;Q16531-2 DDB1 DNA damage-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 39.861 40.09 3 0.00050973 11431 20211116_3435_TMUAki_TMT10x_P_F7 138.33 81.23 746430 1163400 4266.5 1465500 2135900 1619600 1082200 900410 885460 798830 1060200 694980 1086700 78946 1476000 2021400 1624200 1146700 948730 915610 784360 1017400 2 2 1 2 2 2 2 2 2 2 2 746430 1163400 4266.5 1465500 2135900 1619600 1082200 900410 885460 798830 1060200 694980 1086700 78946 1476000 2021400 1624200 1146700 948730 915610 784360 1017400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 120360000 120360000 0 8616 1847 8032 45706;45707;45708 55248;55249;55250 55249 3 IEIEAER Unmodified 858.4447 0.44469675 3062 Q9P2D1 CHD7 Chromodomain-helicase-DNA-binding protein 7 yes yes 0 0 0 0 By MS/MS 2 0 1 1 36.464 36.564 2 0.071303 8803 20211116_3440_TMUAki_TMT10x_S_F2 60.895 0.30613 274600 421370 0 506100 276850 219920 289170 274530 263720 273260 330090 255660 393500 20391 506040 265610 242920 291890 276330 271760 266930 316370 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 274600 421370 0 506100 276850 219920 289170 274530 263720 273260 330090 255660 393500 20391 506040 265610 242920 291890 276330 271760 266930 316370 1 1 0 1 1 1 1 1 1 1 1 5563000 0 5563000 8617 3062 8033 45709 55251 55251 1 IEIESFYEGEDFSETLTR Unmodified 2163.9848 0.98481003 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 4 2 2 78.603 78.581 2;3 3.0519E-23 27694 20211116_3439_TMUAki_TMT10x_S_F1 166.86 144.87 17267000 29849000 288370 25289000 20670000 26703000 22463000 18941000 19694000 20541000 22200000 16079000 27835000 1660400 26143000 19876000 26941000 22605000 19698000 20245000 19996000 21338000 5 5 3 5 5 5 5 5 5 5 5 7028300 11404000 48652 9286800 6517100 13665000 7836600 7664300 8146800 8279000 8966500 6543800 10633000 549630 9689100 6280400 13516000 7889600 8113800 8303500 8060400 8624300 2 2 1 2 2 2 2 2 2 2 2 10239000 18445000 239720 16003000 14153000 13037000 14626000 11277000 11547000 12262000 13233000 9535000 17202000 1110800 16453000 13596000 13425000 14716000 11584000 11942000 11935000 12713000 3 3 2 3 3 3 3 3 3 3 3 2821700000 1464000000 1357700000 8618 614 8034 45710;45711;45712;45713 55252;55253;55254;55255;55256 55256 5 IEINFPAEYPFKPPK Unmodified 1788.9451 0.94505789 1415 P68036;P68036-2;P68036-3 UBE2L3 Ubiquitin-conjugating enzyme E2 L3 yes no 0 0 0 1 By MS/MS By MS/MS 3.92 3.1 4 4 1 4 7 6 74.067 74.02 3;4 3.1421E-11 23830 20211116_3436_TMUAki_TMT10x_P_F8 140.74 103.19 152010000 253220000 1020500 232580000 158650000 270670000 194880000 165460000 161850000 175630000 191230000 141540000 236200000 12547000 239300000 153030000 271030000 194760000 173840000 167140000 171110000 183560000 28 28 18 28 28 28 28 28 28 28 28 111330000 183080000 780580 167900000 111840000 219800000 139700000 121520000 119360000 127790000 137520000 103650000 170770000 8973400 173140000 107920000 218510000 139620000 128700000 122960000 124540000 132100000 19 19 12 19 19 19 19 19 19 19 19 40686000 70143000 239910 64675000 46819000 50867000 55185000 43940000 42489000 47842000 53705000 37884000 65430000 3573200 66159000 45110000 52516000 55146000 45142000 44179000 46564000 51460000 9 9 6 9 9 9 9 9 9 9 9 21324000000 12356000000 8968900000 8619 1415 8035 45714;45715;45716;45717;45718;45719;45720;45721;45722;45723;45724;45725;45726 55257;55258;55259;55260;55261;55262;55263;55264;55265;55266;55267;55268;55269;55270;55271;55272;55273;55274;55275;55276;55277;55278;55279;55280;55281;55282;55283;55284 55273 28 IEKLEEYITTSK Unmodified 1452.7712 0.77117585 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 1 By MS/MS 7 0 1 1 69.702 70.146 3 9.1698E-08 23615 20211116_3435_TMUAki_TMT10x_P_F7 108.71 88.332 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8620 1723 8036 45727 55285 55285 1 IENHEGVR Unmodified 952.47264 0.47264284 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 By MS/MS 3 0 2 2 25.837 25.537 2;3 0.00017004 7335 20211116_3441_TMUAki_TMT10x_S_F3 154.28 95.498 162730 278040 2219.8 229850 187300 170070 206790 135420 133880 142420 185910 151540 259260 15905 236990 180220 176160 206480 139640 141230 138810 177730 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 162730 278040 2219.8 229850 187300 170070 206790 135420 133880 142420 185910 151540 259260 15905 236990 180220 176160 206480 139640 141230 138810 177730 2 2 2 2 2 2 2 2 2 2 2 17840000 0 17840000 8621 670;671 8037 45728;45729 55286;55287 55286 2 IENLSNLHQLQMLELGSNR Oxidation (M) 2224.127 0.12701479 1807 Q15435;Q15435-2;Q15435-5;Q15435-4;Q15435-3 PPP1R7 Protein phosphatase 1 regulatory subunit 7 yes no 0 0 1 0 By MS/MS 7.5 0.5 1 1 2 63.619 64.076 3 7.8463E-05 21578 20211116_3446_TMUAki_TMT10x_S_F7 74.364 43.821 2456300 4622000 146650 4025100 3506400 3220900 3010200 3900400 3935700 4226600 4032400 2288200 4310600 355030 4136400 3358500 3346100 3108000 3941100 3966800 4114500 3886900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2456300 4622000 146650 4025100 3506400 3220900 3010200 3900400 3935700 4226600 4032400 2288200 4310600 355030 4136400 3358500 3346100 3108000 3941100 3966800 4114500 3886900 1 1 1 1 1 1 1 1 1 1 1 568280000 0 568280000 8622 1807 8038 45730;45731 55288;55289 55288 2432 2 IENVETLVLQAPK Unmodified 1452.8188 0.81879474 415 O95235;O95235-2 KIF20A Kinesin-like protein KIF20A yes no 0 0 0 0 By MS/MS 6 0 1 1 74.932 74.886 3 0.00036502 23656 20211116_3434_TMUAki_TMT10x_P_F6 77.894 63.865 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8623 415 8039 45732 55290 55290 1 IENVVLVVPVK Unmodified 1207.754 0.75400964 2912 Q9NQW7;Q9NQW7-3;Q9NQW7-2;Q9NQW7-4 XPNPEP1 Xaa-Pro aminopeptidase 1 yes no 0 0 0 0 By MS/MS 8 0 2 2 73.429 73.462 3 0.010181 23703 20211116_3436_TMUAki_TMT10x_P_F8 64.121 40.895 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8624 2912 8040 45733;45734 55291;55292 55291 2 IEPEPFENCLLRPGSPAR Unmodified 2081.0364 0.036408866 1078 P48637;P48637-2 GSS Glutathione synthetase yes no 0 0 0 1 By MS/MS 5 0.816 1 1 1 3 57.851 57.983 3 4.558E-06 17897 20211116_3433_TMUAki_TMT10x_P_F5 94.71 74.662 8463500 14062000 55075 14995000 12975000 18156000 11244000 10710000 10106000 10334000 10829000 7880400 13125000 774590 15278000 12399000 18134000 11460000 11254000 10356000 10108000 10424000 3 3 1 3 3 3 3 3 3 3 3 8463500 14062000 55075 14995000 12975000 18156000 11244000 10710000 10106000 10334000 10829000 7880400 13125000 774590 15278000 12399000 18134000 11460000 11254000 10356000 10108000 10424000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1071100000 1071100000 0 8625 1078 8041 45735;45736;45737 55293;55294;55295 55294 3 IEPPGLFR Unmodified 927.5178 0.51780212 624 P11387;Q969P6;Q969P6-2 TOP1;TOP1MT DNA topoisomerase 1;DNA topoisomerase I, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 55.93 56.244 2 0.0018869 15940 20211116_3434_TMUAki_TMT10x_P_F6 116.3 79.278 49595000 81699000 658260 86319000 70176000 80461000 54887000 68727000 67783000 64321000 68638000 46183000 76251000 5013500 87646000 66943000 82066000 56873000 70337000 68423000 63001000 66186000 7 7 7 7 7 7 7 7 7 7 7 24585000 38005000 221870 41341000 44522000 56059000 32159000 33831000 33429000 32053000 33168000 22893000 35475000 2524300 42159000 42392000 55702000 33306000 35465000 33943000 31378000 32004000 4 4 4 4 4 4 4 4 4 4 4 25010000 43694000 436390 44978000 25654000 24401000 22728000 34897000 34354000 32268000 35469000 23290000 40776000 2489200 45487000 24551000 26364000 23567000 34872000 34480000 31623000 34181000 3 3 3 3 3 3 3 3 3 3 3 4636900000 2235400000 2401400000 8626 624 8042 45738;45739;45740;45741;45742;45743 55296;55297;55298;55299;55300;55301;55302;55303 55298 8 IEPSTVVPAQTPWDKPR Unmodified 1920.0105 0.010511692 1919 Q5JRX3;Q5JRX3-2;Q5JRX3-3 PITRM1 Presequence protease, mitochondrial yes no 0 0 0 1 By MS/MS 7 0 1 1 55.358 56.087 3 2.2197E-10 17757 20211116_3435_TMUAki_TMT10x_P_F7 120.66 106.95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8627 1919 8043 45744 55304 55304 1 IEPSVNFLK Unmodified 1045.5808 0.5807963 1577 Q12907 LMAN2 Vesicular integral-membrane protein VIP36 yes yes 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 62.727 63.297 2 0.00038805 20697 20211116_3435_TMUAki_TMT10x_P_F7 125.16 80.079 13238000 22189000 197570 25286000 17967000 21883000 14766000 15183000 15844000 14998000 17151000 12328000 20716000 1347900 25526000 17159000 22352000 15178000 15770000 16117000 14656000 16504000 2 2 2 2 2 2 2 2 2 2 2 7339100 11994000 158550 14485000 11723000 16077000 9418000 7935800 8743700 7849800 9484000 6834600 11201000 817630 14625000 11193000 16097000 9652800 8476800 8951000 7670000 9126000 1 1 1 1 1 1 1 1 1 1 1 5899300 10195000 39020 10801000 6243900 5806300 5347600 7247200 7100000 7148400 7666800 5493100 9515000 530280 10901000 5966800 6255500 5525400 7292800 7166500 6985500 7378300 1 1 1 1 1 1 1 1 1 1 1 1215500000 661730000 553800000 8628 1577 8044 45745;45746;45747 55305;55306;55307 55306 3 IEQKEELDDVIALD Unmodified 1628.8145 0.81449723 3087 Q9UBT2;Q9UBT2-2 UBA2 SUMO-activating enzyme subunit 2 yes no 0 0 0 1 By MS/MS By MS/MS 1.62 0.696 4 3 1 3 5 72.775 72.686 2;3 0.00026153 23259 20211116_3428_TMUAki_TMT10x_P_F1 82.102 68.439 26503000 44897000 0 42314000 31960000 42957000 30370000 27582000 29336000 29911000 34022000 24675000 41884000 1926700 43359000 30583000 43377000 30856000 28890000 30056000 29117000 32674000 6 6 0 6 6 6 6 6 6 6 6 14967000 24245000 0 22954000 17097000 30374000 17786000 15797000 17304000 17196000 19070000 13934000 22618000 1042400 23619000 16395000 30158000 17990000 16839000 17687000 16737000 18342000 4 4 0 4 4 4 4 4 4 4 4 11537000 20652000 0 19359000 14864000 12583000 12584000 11786000 12033000 12715000 14951000 10741000 19266000 884310 19740000 14187000 13219000 12867000 12051000 12369000 12380000 14333000 2 2 0 2 2 2 2 2 2 2 2 4527500000 2948700000 1578900000 8629 3087 8045 45748;45749;45750;45751;45752;45753;45754;45755 55308;55309;55310;55311;55312;55313;55314;55315;55316 55308 9 IEQLSPFPFDLLLK Unmodified 1658.9283 0.92834519 1491 Q02218;Q02218-2 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 3.5 2.6 3 1 2 2 82.619 82.617 2;3 1.3043E-19 27583 20211116_3440_TMUAki_TMT10x_S_F2 157.52 108.77 1655500 2452200 26913 2570400 1325700 2683500 1670000 1511500 1651800 1614900 1903000 1541600 2288600 151330 2615600 1281100 2700500 1675400 1599100 1690100 1573000 1827900 3 3 2 3 3 3 3 3 3 3 3 1655500 2452200 26913 2570400 1325700 2683500 1670000 1511500 1651800 1614900 1903000 1541600 2288600 151330 2615600 1281100 2700500 1675400 1599100 1690100 1573000 1827900 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 552900000 185720000 367180000 8630 1491 8046 45756;45757;45758;45759 55317;55318;55319;55320 55320 4 IESIQLMMDSETGR 2 Oxidation (M) 1640.7386 0.73857187 1711 Q14498;Q14498-2;Q14498-3 RBM39 RNA-binding protein 39 yes no 0 0 2 0 By MS/MS 3 0 1 1 47.861 47.836 2 5.0732E-06 15121 20211116_3430_TMUAki_TMT10x_P_F3 93.843 77.589 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8631 1711 8047 45760 55321 55321 2301;2302 1 IESLSSQLSNLQK Unmodified 1445.7726 0.77257283 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 4 2 2 65.52 65.606 2;3 6.7712E-44 20462 20211116_3436_TMUAki_TMT10x_P_F8 286.85 236.05 16136000 28582000 269490 31106000 21072000 27698000 18187000 24329000 26459000 24772000 24162000 15026000 26679000 1641100 31504000 20147000 28351000 18855000 24919000 26474000 24175000 23379000 4 4 3 4 4 4 4 4 4 4 4 7533100 12636000 95359 13390000 13508000 18775000 10725000 10897000 11597000 10942000 10566000 7014600 11794000 780100 13687000 12886000 18617000 11051000 11479000 11723000 10685000 10224000 2 2 1 2 2 2 2 2 2 2 2 8603300 15945000 174130 17716000 7564000 8923400 7462000 13432000 14862000 13830000 13597000 8011800 14885000 861000 17817000 7260700 9734200 7803500 13441000 14751000 13490000 13155000 2 2 2 2 2 2 2 2 2 2 2 2505200000 1711800000 793330000 8632 748 8048 45761;45762;45763;45764 55322;55323;55324;55325;55326 55323 5 IESPKLER Unmodified 970.54475 0.54474515 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 1 By MS/MS 5 0 1 1 32.859 33.022 3 0.067122 6639 20211116_3444_TMUAki_TMT10x_S_F5 43.282 15.269 192810 320970 3924.5 307810 208900 193150 242960 181610 207380 173370 251380 179550 299450 19868 313230 201400 203580 243560 184980 214090 169660 241130 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 192810 320970 3924.5 307810 208900 193150 242960 181610 207380 173370 251380 179550 299450 19868 313230 201400 203580 243560 184980 214090 169660 241130 1 1 1 1 1 1 1 1 1 1 1 4610500 0 4610500 8633 2345 8049 45765 55327 55327 1 IETIEVMEDR Oxidation (M) 1249.586 0.58601761 1168;1169 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 1 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 44.746 44.619 2 4.7694E-06 11772 20211116_3428_TMUAki_TMT10x_P_F1 147.24 119.07 6419400 9570800 11167 11496000 11733000 12307000 7961100 8083000 8770800 7789600 9077600 5976700 8937700 563710 11604000 11153000 12393000 8297600 8422600 8898300 7619800 8747300 5 5 2 5 5 5 5 5 5 5 5 4473600 6584300 8973.6 8270600 10057000 10361000 5894700 5791100 6289700 5451700 6476100 4165300 6150200 440230 8349600 9537700 10323000 6209100 6108400 6388000 5338400 6241400 3 3 1 3 3 3 3 3 3 3 3 1945800 2986400 2193.7 3225800 1676400 1946900 2066500 2291900 2481100 2337900 2601500 1811400 2787600 123480 3254800 1615000 2070000 2088600 2314200 2510300 2281400 2505900 2 2 1 2 2 2 2 2 2 2 2 1719400000 1233400000 485970000 8634 1168;1169 8050 45766;45767;45768;45769 55328;55329;55330;55331;55332 55328 1554 5 IETIEVMEDR Unmodified 1233.5911 0.59110299 1168;1169 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 56.81 56.659 2 0.0050199 18822 20211116_3439_TMUAki_TMT10x_S_F1 76.815 40.419 40850000 67935000 1115100 81515000 45643000 61874000 43468000 37541000 42726000 44020000 46902000 38043000 63441000 4493100 81906000 43777000 63698000 44182000 39591000 43647000 42726000 45116000 2 2 2 2 2 2 2 2 2 2 2 25581000 43972000 946300 51723000 34809000 49889000 30013000 24445000 28913000 28593000 28544000 23826000 41059000 3132000 52191000 33313000 50365000 30660000 26263000 29449000 27755000 27546000 1 1 1 1 1 1 1 1 1 1 1 15269000 23963000 168790 29792000 10833000 11985000 13455000 13096000 13812000 15427000 18359000 14218000 22382000 1361100 29715000 10464000 13333000 13522000 13329000 14197000 14971000 17569000 1 1 1 1 1 1 1 1 1 1 1 1175100000 719900000 455200000 8635 1168;1169 8050 45770;45771;45772 55333;55334;55335 55334 3 IETLDPALIRPGR Unmodified 1449.8304 0.83036248 1336 P62191;P62191-2 PSMC1 26S protease regulatory subunit 4 yes no 0 0 0 1 By MS/MS By MS/MS 7 0.756 2 3 2 3 4 54.555 54.8 3 7.9466E-23 17199 20211116_3435_TMUAki_TMT10x_P_F7 208.08 147.61 23552000 40731000 218260 43009000 33662000 41641000 26889000 33220000 32694000 31605000 33243000 21931000 38015000 2260900 43695000 32118000 42316000 27808000 34152000 33026000 30933000 32052000 8 8 6 8 8 8 8 8 8 8 8 11860000 19954000 110350 20539000 22152000 29657000 16278000 16582000 16454000 15576000 16182000 11044000 18621000 1194900 21048000 21097000 29357000 16824000 17489000 16722000 15254000 15618000 4 4 3 4 4 4 4 4 4 4 4 11692000 20778000 107910 22471000 11511000 11983000 10610000 16638000 16240000 16029000 17062000 10887000 19394000 1066000 22648000 11021000 12959000 10984000 16663000 16305000 15680000 16433000 4 4 3 4 4 4 4 4 4 4 4 4473000000 2270700000 2202300000 8636 1336 8051 45773;45774;45775;45776;45777;45778;45779 55336;55337;55338;55339;55340;55341;55342;55343;55344 55338 9 IETMLGDVAVAVHPK Oxidation (M) 1594.8389 0.83887826 820 P26640;P26640-2 VARS Valine--tRNA ligase yes no 0 0 1 0 By MS/MS By MS/MS 5.14 0.639 1 4 2 6 1 56.141 56.312 3 7.2704E-10 16263 20211116_3434_TMUAki_TMT10x_P_F6 110.98 91.661 10474000 18323000 382500 17738000 18233000 27402000 14019000 16990000 17799000 14617000 15458000 9754700 17095000 1308400 18281000 17399000 27086000 14557000 17728000 17859000 14374000 14984000 3 3 1 3 3 3 3 3 3 3 3 10474000 18323000 382500 17738000 18233000 27402000 14019000 16990000 17799000 14617000 15458000 9754700 17095000 1308400 18281000 17399000 27086000 14557000 17728000 17859000 14374000 14984000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 724380000 724380000 0 8637 820 8052 45780;45781;45782;45783;45784;45785;45786 55345;55346;55347;55348;55349;55350;55351;55352 55351 985 8 IETMLGDVAVAVHPK Unmodified 1578.844 0.84396364 820 P26640;P26640-2 VARS Valine--tRNA ligase yes no 0 0 0 0 By MS/MS By MS/MS 6.6 0.49 2 3 3 2 71.578 71.61 3 1.3857E-07 24667 20211116_3446_TMUAki_TMT10x_S_F7 119.87 96.988 33710000 54059000 288560 55729000 38255000 29410000 36717000 22146000 20836000 23087000 34486000 31388000 50449000 2941300 56341000 36647000 31421000 36833000 22911000 22376000 22509000 32845000 6 6 3 6 6 6 6 6 6 6 6 3852700 5605400 0 5903800 4238600 5891300 4225900 2882900 2674500 2969700 4106900 3587200 5231600 313480 6001500 4063100 5934900 4239200 3085600 2839500 2896800 3917400 1 1 0 1 1 1 1 1 1 1 1 29857000 48453000 288560 49825000 34016000 23519000 32491000 19263000 18162000 20117000 30379000 27801000 45217000 2627800 50340000 32584000 25487000 32593000 19825000 19537000 19613000 28928000 5 5 3 5 5 5 5 5 5 5 5 2013300000 576430000 1436900000 8638 820 8052 45787;45788;45789;45790;45791 55353;55354;55355;55356;55357;55358;55359;55360 55359 8 IEVEKPFAIAKE Unmodified 1372.7602 0.76021723 779 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 0 2 By MS/MS By MS/MS 6.22 1.31 1 2 2 2 2 5 4 58.909 59.134 3 5.346E-08 17143 20211116_3434_TMUAki_TMT10x_P_F6 140.1 113.97 178760000 295340000 3677800 353200000 327240000 324460000 187500000 251850000 237610000 219890000 251270000 166470000 275800000 20291000 355810000 310480000 330680000 199040000 258770000 240020000 216070000 241970000 17 17 15 17 17 17 17 17 17 17 17 100820000 164160000 2474400 195400000 246820000 256630000 127240000 136320000 140510000 124320000 144570000 93887000 153300000 12709000 198050000 233810000 254950000 135730000 144310000 142510000 121910000 139340000 10 10 10 10 10 10 10 10 10 10 10 77949000 131170000 1203500 157810000 80415000 67832000 60257000 115530000 97096000 95565000 106700000 72587000 122500000 7581700 157760000 76669000 75724000 63316000 114460000 97507000 94157000 102630000 7 7 5 7 7 7 7 7 7 7 7 11571000000 6274600000 5296600000 8639 779 8053 45792;45793;45794;45795;45796;45797;45798;45799;45800 55361;55362;55363;55364;55365;55366;55367;55368;55369;55370;55371;55372;55373;55374;55375;55376;55377;55378 55364 18 IEVIEIMTDR Oxidation (M) 1233.6275 0.6274885 583 P09651;P09651-2;P09651-3;Q32P51 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 1 0 By MS/MS By MS/MS 2.56 1.07 2 2 3 2 4 5 61.956 61.798 2 0.0007741 18634 20211116_3430_TMUAki_TMT10x_P_F3 105.35 74.609 83721000 131340000 1322400 138330000 97456000 153610000 93995000 117710000 119190000 118240000 111540000 77958000 122580000 7816400 140850000 93403000 154740000 96305000 121510000 119880000 115460000 107840000 13 13 4 13 13 13 13 13 13 13 13 54225000 81311000 706560 88254000 72870000 116450000 60638000 73066000 73552000 71323000 68197000 50491000 75897000 5057600 89965000 69583000 115910000 62547000 76425000 74072000 69729000 65953000 7 7 2 7 7 7 7 7 7 7 7 29496000 50028000 615810 50073000 24586000 37163000 33357000 44646000 45641000 46918000 43345000 27467000 46682000 2758800 50887000 23820000 38824000 33757000 45084000 45812000 45729000 41884000 6 6 2 6 6 6 6 6 6 6 6 17841000000 9138600000 8701900000 8640 583 8054 45801;45802;45803;45804;45805;45806;45807;45808;45809 55379;55380;55381;55382;55383;55384;55385;55386;55387;55388;55389;55390;55391 55384 551 13 IEVIEIMTDR Unmodified 1217.6326 0.63257388 583 P09651;P09651-2;P09651-3;Q32P51 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.09 1.5 2 2 3 2 1 1 5 6 68.28 68.188 2 8.706E-10 25424 20211116_3429_TMUAki_TMT10x_P_F2 192.26 127.43 158460000 240810000 2419600 275740000 149250000 174110000 179900000 70370000 59262000 90097000 158880000 147550000 224830000 14556000 277310000 143980000 181310000 177140000 77373000 69103000 87181000 150190000 15 15 6 15 15 15 15 15 15 15 15 93017000 134510000 1938200 160560000 96153000 124920000 110620000 41551000 34074000 52914000 93068000 86619000 125610000 9139000 161430000 92649000 127590000 109080000 46794000 40107000 51210000 87953000 8 8 3 8 8 8 8 8 8 8 8 65439000 106300000 481390 115180000 53094000 49192000 69281000 28819000 25188000 37183000 65817000 60931000 99219000 5416500 115880000 51327000 53726000 68064000 30580000 28996000 35970000 62234000 7 7 3 7 7 7 7 7 7 7 7 25922000000 13815000000 12107000000 8641 583 8054 45810;45811;45812;45813;45814;45815;45816;45817;45818;45819;45820 55392;55393;55394;55395;55396;55397;55398;55399;55400;55401;55402;55403;55404;55405;55406 55393 15 IEVIKPGDLGVDLTSK Unmodified 1682.9455 0.94545182 968 P38117;P38117-2 ETFB Electron transfer flavoprotein subunit beta yes no 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 69.599 69.96 3 4.2868E-15 23622 20211116_3435_TMUAki_TMT10x_P_F7 149.47 120.5 14842000 25005000 174850 23362000 19507000 28315000 19045000 24261000 21329000 21189000 21083000 13821000 23327000 1441600 24024000 18702000 28449000 19413000 24780000 21590000 20821000 20345000 3 3 2 3 3 3 3 3 3 3 3 8605800 14600000 60776 13522000 10763000 20414000 11717000 14216000 12139000 11968000 12200000 8013200 13620000 783090 13974000 10347000 20232000 11848000 14699000 12333000 11781000 11767000 2 2 1 2 2 2 2 2 2 2 2 6236500 10405000 114070 9840600 8743800 7900300 7328300 10045000 9190000 9220900 8882800 5807600 9707000 658470 10050000 8355300 8216200 7565000 10081000 9256900 9039500 8578400 1 1 1 1 1 1 1 1 1 1 1 1340200000 763290000 576920000 8642 968 8055 45821;45822 55407;55408;55409 55408 3 IEVLQQHENEDIYK Unmodified 1756.8632 0.86317875 98 O00505 KPNA3 Importin subunit alpha-4 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 51.388 51.26 3 3.1869E-09 16553 20211116_3430_TMUAki_TMT10x_P_F3 122.34 102.5 2385900 3681700 18651 4438900 4257300 4172900 2910400 3172200 3165800 2744200 3100500 2221700 3438200 239680 4470900 4049300 4245000 3030500 3263000 3207200 2697800 2993000 2 2 1 2 2 2 2 2 2 2 2 1324300 2015900 18651 2594800 3295800 3308000 2030000 1787900 1841300 1542600 1779400 1233200 1883300 154790 2616900 3129500 3291800 2119400 1887200 1879300 1516700 1718400 1 1 1 1 1 1 1 1 1 1 1 1061600 1665800 0 1844100 961480 864900 880440 1384300 1324500 1201600 1321100 988470 1555000 84892 1854000 919770 953170 911050 1375800 1327900 1181100 1274600 1 1 0 1 1 1 1 1 1 1 1 454810000 123670000 331130000 8643 98 8056 45823;45824;45825 55410;55411 55410 2 IEVPLYSLLEQTHLK Unmodified 1781.9927 0.99273636 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 0 By MS/MS By MS/MS 6 2.27 1 1 1 2 2 4 3 78.798 78.801 3 4.2821E-44 25292 20211116_3447_TMUAki_TMT10x_S_F8 269.4 249.81 44441000 69146000 440600 70204000 37520000 58682000 56663000 30873000 33175000 40811000 48396000 41382000 64524000 3998100 71373000 36484000 59867000 55748000 33091000 35318000 39449000 46214000 6 6 6 6 6 6 6 6 6 6 6 15245000 21882000 113600 22406000 12249000 22649000 14354000 9834300 10735000 12807000 15012000 14195000 20420000 1327800 22825000 11805000 22770000 14338000 10735000 11231000 12385000 14349000 2 2 2 2 2 2 2 2 2 2 2 29196000 47264000 327000 47798000 25271000 36033000 42309000 21039000 22441000 28005000 33383000 27187000 44104000 2670300 48548000 24679000 37097000 41410000 22356000 24087000 27064000 31865000 4 4 4 4 4 4 4 4 4 4 4 9484500000 4383300000 5101200000 8644 2345 8057 45826;45827;45828;45829;45830;45831;45832 55412;55413;55414;55415;55416;55417 55416 6 IEVQDTSGGTTALRPSASTQALSSSVSSSK Unmodified 2951.4684 0.4683519 1847 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 2 4 3 3 51.443 51.87 3;4 1.1175E-203 16603 20211116_3446_TMUAki_TMT10x_S_F7 394.35 353.27 27827000 50776000 245370 54712000 33434000 45828000 25332000 35273000 35792000 32835000 37317000 25911000 47394000 1760900 55404000 31868000 46998000 26443000 36323000 36008000 32169000 35951000 10 10 5 10 10 10 10 10 10 10 10 12940000 21674000 13963 22551000 22921000 34889000 18499000 15630000 16173000 16035000 16602000 12048000 20227000 589540 23128000 21867000 34348000 18924000 16875000 16570000 15644000 16002000 5 5 2 5 5 5 5 5 5 5 5 14887000 29102000 231400 32161000 10513000 10940000 6833300 19643000 19619000 16800000 20715000 13863000 27166000 1171300 32276000 10001000 12649000 7519500 19448000 19438000 16525000 19949000 5 5 3 5 5 5 5 5 5 5 5 14873000000 9582600000 5290800000 8645 1847 8058 45833;45834;45835;45836;45837;45838 55418;55419;55420;55421;55422;55423;55424;55425;55426;55427 55427 10 IEWLESHQDADIEDFK Unmodified 1973.9007 0.90068647 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.957 1 2 2 1 3 3 71.994 71.805 3 2.4517E-29 24427 20211116_3429_TMUAki_TMT10x_P_F2 191.96 174.81 67584000 104470000 687920 127480000 78275000 75167000 79888000 75781000 80286000 75571000 86400000 62930000 97569000 6083400 127640000 75115000 79816000 80962000 77012000 81877000 73815000 83157000 11 11 9 11 11 11 11 11 11 11 11 31557000 48550000 174420 61410000 42145000 49542000 42663000 25947000 25812000 27831000 36033000 29383000 45351000 2764200 61562000 40423000 50672000 42726000 27629000 27359000 27104000 34444000 5 5 4 5 5 5 5 5 5 5 5 36027000 55921000 513500 66071000 36130000 25624000 37225000 49834000 54475000 47740000 50366000 33547000 52218000 3319200 66081000 34692000 29143000 38236000 49383000 54518000 46711000 48714000 6 6 5 6 6 6 6 6 6 6 6 4521700000 2833700000 1688000000 8646 614 8059 45839;45840;45841;45842;45843;45844 55428;55429;55430;55431;55432;55433;55434;55435;55436;55437;55438 55430 11 IEYDCELVPR Unmodified 1292.6071 0.60708741 3056 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 0 By MS/MS By MS/MS 2.71 1.03 1 2 2 2 3 4 54.202 54.068 2 3.6017E-07 17224 20211116_3429_TMUAki_TMT10x_P_F2 114.5 90.341 36874000 62091000 442800 66945000 47793000 52612000 34621000 53539000 51073000 46064000 49663000 34330000 57955000 2683200 67738000 45468000 54503000 36316000 54164000 51188000 45297000 47952000 7 7 4 7 7 7 7 7 7 7 7 13625000 21974000 345700 25120000 28157000 34223000 18549000 18500000 16324000 15989000 16916000 12688000 20516000 1619800 25540000 26775000 33949000 19248000 19528000 16726000 15719000 16300000 3 3 2 3 3 3 3 3 3 3 3 23250000 40117000 97101 41825000 19636000 18389000 16072000 35039000 34748000 30075000 32747000 21642000 37439000 1063500 42198000 18693000 20554000 17067000 34637000 34462000 29578000 31652000 4 4 2 4 4 4 4 4 4 4 4 2511500000 1238900000 1272700000 8647 3056 8060 45845;45846;45847;45848;45849;45850;45851 55439;55440;55441;55442;55443;55444;55445;55446;55447 55439 9 IEYDTFGELKVPNDK Unmodified 1766.8727 0.87268081 547 P07954;P07954-2 FH Fumarate hydratase, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 5.25 0.829 1 1 2 2 2 63.661 63.675 3 4.9536E-10 19969 20211116_3431_TMUAki_TMT10x_P_F4 118.08 98.502 18883000 33043000 254000 30669000 24154000 32445000 21195000 25084000 25910000 26084000 26986000 17584000 30824000 1876100 31482000 23101000 32778000 21800000 25905000 26191000 25434000 25999000 4 4 4 4 4 4 4 4 4 4 4 9472800 16295000 144380 14915000 13615000 23024000 12616000 12484000 12757000 13312000 13089000 8821200 15200000 977930 15435000 13038000 22718000 12854000 13250000 12984000 12967000 12616000 2 2 2 2 2 2 2 2 2 2 2 9410300 16747000 109620 15754000 10539000 9421800 8578500 12600000 13153000 12772000 13896000 8762700 15623000 898160 16047000 10063000 10060000 8945700 12656000 13207000 12467000 13382000 2 2 2 2 2 2 2 2 2 2 2 2045500000 661910000 1383600000 8648 547 8061 45852;45853;45854;45855 55448;55449;55450;55451;55452 55448 5 IEYQFFEDR Unmodified 1245.5666 0.5666028 3025 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 63.757 63.459 2 0.01905 22633 20211116_3441_TMUAki_TMT10x_S_F3 66.321 52.519 4811300 7236300 118070 7893200 5874900 9798000 6575000 5489800 4594300 5381100 6019100 4480700 6754700 523820 8034400 5657900 9767300 6571400 5795800 4811200 5260000 5762300 1 1 1 1 1 1 1 1 1 1 1 4811300 7236300 118070 7893200 5874900 9798000 6575000 5489800 4594300 5381100 6019100 4480700 6754700 523820 8034400 5657900 9767300 6571400 5795800 4811200 5260000 5762300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 599200000 599200000 0 8649 3025 8062 45856;45857 55453;55454 55454 2 IEYVTVTPEGFR Unmodified 1409.7191 0.7190807 2047 Q7KZ85;Q7KZ85-2 SUPT6H Transcription elongation factor SPT6 yes no 0 0 0 0 By MS/MS 5 0 1 1 63.657 63.806 2 8.3698E-12 20280 20211116_3433_TMUAki_TMT10x_P_F5 135.86 90.141 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8650 2047 8063 45858 55455 55455 1 IFAENRYGK Unmodified 1096.5665 0.56654322 2330 Q8WZ42-9;Q8WZ42-7;Q8WZ42-12;Q8WZ42;Q8WZ42-3;Q8WZ42-10;Q8WZ42-5;Q8WZ42-11;Q8WZ42-4;Q8WZ42-2;Q8WZ42-8;Q8WZ42-13 TTN Titin yes no 0 0 0 1 By MS/MS By matching 8 0 2 1 1 42.306 42.435 3 0.07722 11046 20211116_3436_TMUAki_TMT10x_P_F8 40.352 9.6482 4263300 6717200 98062 6138700 7291000 8080900 4672700 4291100 4280800 4298000 5168500 3970300 6265700 487250 6332300 6931100 8027300 4864500 4554300 4403600 4197400 4958400 1 1 1 1 1 1 1 1 1 1 1 4263300 6717200 98062 6138700 7291000 8080900 4672700 4291100 4280800 4298000 5168500 3970300 6265700 487250 6332300 6931100 8027300 4864500 4554300 4403600 4197400 4958400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 74163000 52633000 21531000 8651 2330 8064 45859;45860 55456 55456 1 IFAGHLADVNCTR Unmodified 1472.7194 0.71943182 1813 Q15542;Q15542-2 TAF5 Transcription initiation factor TFIID subunit 5 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 43.729 44.256 3 1.2824E-06 13475 20211116_3446_TMUAki_TMT10x_S_F7 115.37 102.14 1826700 2744600 22877 3234400 2987400 3614600 2321300 2788900 2532000 2501700 2975700 1701000 2562800 189020 3270800 2849100 3640300 2396000 2868600 2582400 2455100 2856800 2 2 2 2 2 2 2 2 2 2 2 1116900 1562500 13568 1862100 2295200 3018200 1732700 1751800 1557800 1526300 1833900 1040100 1459100 121750 1895800 2187400 2975000 1781600 1838300 1602200 1499900 1760600 1 1 1 1 1 1 1 1 1 1 1 709740 1182100 9308.9 1372300 692270 596380 588610 1037100 974230 975410 1141800 660910 1103700 67273 1375000 661740 665320 614410 1030300 980180 955180 1096200 1 1 1 1 1 1 1 1 1 1 1 145750000 95460000 50287000 8652 1813 8065 45861;45862 55457;55458 55458 2 IFANTESYLK Unmodified 1184.6077 0.60773933 1554 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 0 0 0 0 By MS/MS 7 0 1 1 62.094 62.789 2 8.7202E-11 20538 20211116_3435_TMUAki_TMT10x_P_F7 202.2 156.52 3608700 5726300 52881 6088100 5869100 8610400 4471200 5045000 5011100 5065500 4599100 3360500 5344600 380130 6223000 5595600 8536000 4625100 5310000 5059700 4946400 4449400 1 1 1 1 1 1 1 1 1 1 1 3608700 5726300 52881 6088100 5869100 8610400 4471200 5045000 5011100 5065500 4599100 3360500 5344600 380130 6223000 5595600 8536000 4625100 5310000 5059700 4946400 4449400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 413480000 413480000 0 8653 1554 8066 45863 55459 55459 1 IFAPNHVVAK Unmodified 1094.6237 0.62366417 1495 Q02543 RPL18A 60S ribosomal protein L18a yes yes 0 0 0 0 By MS/MS By MS/MS 4 2.73 2 3 2 2 2 6 5 42.274 42.386 2;3 8.8313E-11 12588 20211116_3429_TMUAki_TMT10x_P_F2 182.39 131.42 24339000 39396000 91229 37252000 38550000 37334000 26306000 25056000 25058000 23766000 29690000 22662000 36753000 2173800 38155000 36653000 37752000 27285000 26056000 25711000 23264000 28497000 10 10 5 10 10 10 10 10 10 10 10 16790000 26936000 75409 24792000 30901000 30913000 18979000 16346000 16696000 15843000 19838000 15633000 25126000 1567400 25535000 29328000 30787000 19804000 17340000 17197000 15494000 19040000 5 5 2 5 5 5 5 5 5 5 5 7549500 12460000 15820 12460000 7649700 6421000 7327400 8709800 8361700 7923300 9851800 7029200 11626000 606420 12621000 7325400 6965200 7481400 8716500 8514200 7770700 9457500 5 5 3 5 5 5 5 5 5 5 5 8110200000 5436600000 2673500000 8654 1495 8067 45864;45865;45866;45867;45868;45869;45870;45871;45872;45873;45874 55460;55461;55462;55463;55464;55465;55466;55467;55468;55469;55470;55471;55472 55462 13 IFAQYLVPHNLETEER Unmodified 1957.9898 0.98977625 1875 Q29RF7;Q29RF7-3 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 0 0 0 0 By MS/MS 7 0 1 1 65.158 65.767 3 0.038773 21760 20211116_3435_TMUAki_TMT10x_P_F7 43.05 31.788 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8655 1875 8068 45875 55473 55473 1 IFAQYMVPHNLETTER Unmodified 1947.9513 0.95128225 2945 Q9NTI5;Q9NTI5-2;Q9NTI5-3 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 60.424 61.032 3 0.00025057 19798 20211116_3435_TMUAki_TMT10x_P_F7 76.151 73.789 7370500 13379000 217750 12354000 9076200 12353000 8483600 10327000 10033000 10099000 10571000 6864300 12481000 837890 12676000 8701000 12539000 8684300 10595000 10158000 9872200 10181000 2 2 2 2 2 2 2 2 2 2 2 3414400 5791000 86611 5133800 4286700 7597300 3993800 4666200 4210000 4691900 4541300 3179800 5401100 376010 5320600 4108200 7521800 4073100 4892900 4285200 4581300 4370600 1 1 1 1 1 1 1 1 1 1 1 3956100 7588500 131140 7220600 4789500 4755800 4489900 5661100 5822900 5406600 6029600 3684500 7079500 461880 7355400 4592800 5017200 4611200 5702500 5872800 5290900 5810100 1 1 1 1 1 1 1 1 1 1 1 753270000 431900000 321380000 8656 2945 8069 45876;45877 55474;55475 55474 2 IFAQYMVPHNLETTER Oxidation (M) 1963.9462 0.94619688 2945 Q9NTI5;Q9NTI5-2;Q9NTI5-3 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 0 0 1 0 By MS/MS 7 0 1 1 53.21 53.723 3 0.046678 17340 20211116_3446_TMUAki_TMT10x_S_F7 41.412 30.041 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8657 2945 8069 45878 55476 55476 3035 1 IFASIAPSIYGHEDIKR Unmodified 1916.0156 0.01559707 1114 P49736 MCM2 DNA replication licensing factor MCM2 yes yes 0 0 0 1 By MS/MS By MS/MS 2.25 1.09 1 2 1 2 2 59.635 59.483 4 7.9795E-11 17856 20211116_3428_TMUAki_TMT10x_P_F1 123.42 97.292 10746000 18244000 101560 18721000 18122000 18783000 11712000 13139000 12321000 12338000 13401000 10007000 17025000 1087500 19066000 17221000 19004000 12234000 13620000 12546000 12083000 12894000 4 4 3 4 4 4 4 4 4 4 4 5526500 8989700 21435 9765000 8187000 13874000 6171800 6050400 6674800 6324500 6139000 5145800 8391200 514040 9968600 7800700 13704000 6381300 6554700 6749400 6165600 5938700 2 2 1 2 2 2 2 2 2 2 2 5219800 9254100 80129 8956300 9935300 4909600 5539800 7089000 5645800 6013700 7262300 4860700 8634000 573480 9097500 9420800 5300100 5852300 7065400 5796300 5917600 6955600 2 2 2 2 2 2 2 2 2 2 2 1654200000 817220000 836970000 8658 1114 8070 45879;45880;45881;45882 55477;55478;55479;55480 55478 4 IFCCHGGLSPDLQSMEQIR Unmodified 2247.0235 0.023477694 1333;1334;957 P62140;P36873;P36873-2;P62136;P62136-2;P62136-3 PPP1CB;PPP1CC;PPP1CA Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit no no 0 0 0 0 By MS/MS 7 0 1 1 62.886 63.558 3 0.024418 20832 20211116_3435_TMUAki_TMT10x_P_F7 44.831 37.461 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8659 1334;957;1333 8071 45883 55481 55481 1 IFCCHGGLSPDLQSMEQIRR Unmodified 2403.1246 0.12458872 1333;1334;957 P62140;P36873;P36873-2;P62136;P62136-2;P62136-3 PPP1CB;PPP1CC;PPP1CA Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit no no 0 0 0 1 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 55.412 55.356 4 5.4233E-32 16301 20211116_3436_TMUAki_TMT10x_P_F8 180.78 168.82 12791000 21561000 313140 25273000 18124000 22411000 16931000 12192000 11049000 11258000 15861000 11912000 20132000 1427000 25477000 17367000 22778000 17054000 12883000 11669000 11034000 15152000 4 4 4 4 4 4 4 4 4 4 4 9904500 16966000 242290 19684000 15108000 20155000 14505000 9537500 8668200 8887600 12392000 9223900 15841000 1119800 19896000 14486000 20265000 14563000 10213000 9205900 8706900 11839000 3 3 3 3 3 3 3 3 3 3 3 2886200 4594400 70851 5588100 3015800 2256100 2426700 2654100 2381300 2370300 3469200 2687900 4290800 307130 5580800 2881100 2512900 2490900 2669900 2463100 2326600 3312900 1 1 1 1 1 1 1 1 1 1 1 2710200000 1817400000 892820000 8660 1334;957;1333 8072 45884;45885;45886 55482;55483;55484;55485 55484 4 IFCCHGGLSPDLQSMEQIRR Oxidation (M) 2419.1195 0.11950334 1333;1334;957 P62140;P36873;P36873-2;P62136;P62136-2;P62136-3 PPP1CB;PPP1CC;PPP1CA Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit no no 0 0 1 1 By MS/MS 7.5 0.5 1 1 2 45.288 45.515 4 5.397E-09 11768 20211116_3447_TMUAki_TMT10x_S_F8 108.18 100.35 5341100 8834800 12953 9263000 5253900 3858200 3766900 6841900 6386100 5888700 7445400 4972800 8245400 398330 9338700 4997500 4330900 3979800 6777300 6419800 5790500 7149500 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5341100 8834800 12953 9263000 5253900 3858200 3766900 6841900 6386100 5888700 7445400 4972800 8245400 398330 9338700 4997500 4330900 3979800 6777300 6419800 5790500 7149500 3 3 1 3 3 3 3 3 3 3 3 1459000000 0 1459000000 8661 1334;957;1333 8072 45887;45888 55486;55487;55488 55487 1214 3 IFCGDLGNEVNDDILAR Unmodified 1919.9047 0.90472599 2661 Q9BTD8;Q9BTD8-4;Q9BTD8-2;Q9BTD8-3 RBM42 RNA-binding protein 42 yes no 0 0 0 0 By MS/MS 3 0 1 1 76.327 76.209 3 9.3888E-05 26707 20211116_3430_TMUAki_TMT10x_P_F3 78.501 66.335 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8662 2661 8073 45889 55489 55489 1 IFDANTKPNLNLQVLSNPEFLAEGTAIK Unmodified 3056.6183 0.61825103 283 O60701;O60701-3 UGDH UDP-glucose 6-dehydrogenase yes no 0 0 0 1 By MS/MS 1 0 1 1 79.177 79.177 3 1.0523E-17 25961 20211116_3428_TMUAki_TMT10x_P_F1 122.78 110.47 1721700 2857100 0 2700700 1592100 3006600 1989100 1628300 1687400 1849600 1968400 1602800 2665400 107640 2770800 1534400 3013100 1987500 1731700 1739800 1797300 1890100 1 1 0 1 1 1 1 1 1 1 1 1721700 2857100 0 2700700 1592100 3006600 1989100 1628300 1687400 1849600 1968400 1602800 2665400 107640 2770800 1534400 3013100 1987500 1731700 1739800 1797300 1890100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 486320000 486320000 0 8663 283 8074 45890 55490 55490 1 IFDDVSSGVSQLASK Unmodified 1551.7781 0.77805214 2205 Q8N6T3;Q8N6T3-5;Q8N6T3-3;Q8N6T3-2;Q8N6T3-4 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 76.186 76.208 3 1.1365E-06 24227 20211116_3434_TMUAki_TMT10x_P_F6 107.35 88.617 6533400 11042000 67119 10406000 7467300 8959000 7935000 6053500 5219400 6086800 7667800 6083400 10301000 578460 10639000 7173300 9150800 7940300 6302400 5515600 5943400 7321000 2 2 1 2 2 2 2 2 2 2 2 3172500 5260600 67119 4931500 3202300 5588100 3950200 2959900 2474000 2911600 3901900 2954400 4907400 326000 5064000 3093400 5593300 3922100 3140600 2632100 2845600 3719800 1 1 1 1 1 1 1 1 1 1 1 3360800 5781400 0 5474600 4265000 3370800 3984800 3093600 2745400 3175300 3765900 3129000 5393500 252470 5575200 4079900 3557500 4018200 3161800 2883400 3097800 3601200 1 1 0 1 1 1 1 1 1 1 1 597570000 301720000 295850000 8664 2205 8075 45891;45892 55491;55492 55491 2 IFDEILVNAADNK Unmodified 1460.7511 0.75110911 625;1500 Q02880;Q02880-2;P11388;P11388-2;P11388-3;P11388-4 TOP2B;TOP2A DNA topoisomerase 2-beta;DNA topoisomerase 2-alpha no no 0 0 0 0 By MS/MS By MS/MS 3.43 1.72 4 4 4 4 3 4 11 12 78.608 78.582 2;3 9.0755E-19 27169 20211116_3429_TMUAki_TMT10x_P_F2 182.35 134.06 148450000 241820000 1461500 226500000 162120000 204260000 167610000 150130000 144270000 158980000 179610000 138220000 225590000 13096000 231820000 155630000 208240000 169000000 155640000 149050000 154910000 172170000 23 23 16 23 23 23 23 23 23 23 23 75056000 113750000 511780 105830000 71673000 127950000 83673000 73554000 70743000 79128000 86036000 69884000 106110000 6124100 108850000 69022000 127760000 83845000 77697000 73077000 77051000 82522000 10 10 5 10 10 10 10 10 10 10 10 73390000 128070000 949750 120670000 90448000 76310000 83933000 76580000 73528000 79853000 93578000 68338000 119480000 6972000 122960000 86605000 80482000 85156000 77945000 75969000 77854000 89650000 13 13 11 13 13 13 13 13 13 13 13 20849000000 9945900000 10903000000 8665 1500;625 8076 45893;45894;45895;45896;45897;45898;45899;45900;45901;45902;45903;45904;45905;45906;45907;45908;45909;45910;45911;45912;45913;45914;45915 55493;55494;55495;55496;55497;55498;55499;55500;55501;55502;55503;55504;55505;55506;55507;55508;55509;55510;55511;55512;55513;55514;55515;55516 55495 24 IFDIDEAEEGVK Unmodified 1363.6507 0.65072636 738 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 0 0 0 0 By MS/MS By MS/MS 2.12 0.927 3 1 4 6 2 60.059 59.98 2;3 2.2086E-19 21559 20211116_3428_TMUAki_TMT10x_P_F1 226.71 173.99 33824000 58207000 181430 59828000 46856000 56637000 41338000 38221000 43443000 40874000 46110000 31494000 54320000 3053200 60872000 44793000 57481000 42285000 39869000 44198000 39811000 44398000 8 8 4 8 8 8 8 8 8 8 8 18410000 30493000 169060 31764000 30831000 42739000 27034000 20249000 23823000 22372000 24829000 17143000 28458000 1848100 32479000 29476000 42357000 27521000 21786000 24412000 21762000 23921000 4 4 3 4 4 4 4 4 4 4 4 15414000 27714000 12377 28064000 16025000 13898000 14304000 17972000 19620000 18503000 21280000 14352000 25861000 1205100 28393000 15317000 15124000 14764000 18083000 19786000 18049000 20477000 4 4 1 4 4 4 4 4 4 4 4 2470700000 1484100000 986620000 8666 738 8077 45916;45917;45918;45919;45920;45921;45922;45923 55517;55518;55519;55520;55521;55522;55523;55524;55525;55526;55527 55518 11 IFDIDEAEEGVKDLK Unmodified 1719.8567 0.85669639 738 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 0 0 0 1 By MS/MS 2 0 1 1 74.589 74.445 3 0.00030808 25514 20211116_3429_TMUAki_TMT10x_P_F2 73.296 56.802 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8667 738 8078 45924 55528 55528 1 IFDSEEILAGYKR Unmodified 1539.7933 0.79330827 244 O43776 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 65.464 65.7 3 1.4751E-22 19897 20211116_3434_TMUAki_TMT10x_P_F6 200.19 174.86 37372000 61803000 184820 62957000 59846000 81347000 50843000 56933000 54341000 54361000 53808000 34797000 57673000 3447200 64420000 57159000 81188000 52151000 59041000 55111000 53197000 51923000 5 5 3 5 5 5 5 5 5 5 5 27013000 44956000 184820 45752000 47484000 70980000 40606000 41334000 39906000 39291000 38982000 25153000 41951000 2696200 46995000 45368000 70087000 41526000 43460000 40595000 38458000 37633000 4 4 3 4 4 4 4 4 4 4 4 10358000 16847000 0 17205000 12363000 10367000 10237000 15599000 14435000 15070000 14826000 9643500 15721000 750950 17425000 11792000 11101000 10625000 15580000 14515000 14740000 14290000 1 1 0 1 1 1 1 1 1 1 1 4597500000 2080700000 2516800000 8668 244 8079 45925;45926;45927;45928 55529;55530;55531;55532;55533 55531 5 IFEMGPVFTL Oxidation (M) 1168.5838 0.58383277 467 P00403 MT-CO2 Cytochrome c oxidase subunit 2 yes yes 0 0 1 0 By MS/MS By MS/MS 4.8 1.66 1 2 1 2 2 2 5 5 81.7 81.695 2 0.00069926 26788 20211116_3445_TMUAki_TMT10x_S_F6 107.32 95.091 11993000 20012000 54535 18802000 14365000 18167000 15099000 12449000 12267000 13252000 15146000 11166000 18669000 979070 19257000 13789000 18418000 15190000 12969000 12706000 12909000 14522000 9 9 4 9 9 9 9 9 9 9 9 6079400 9937900 49910 9613600 6062000 10744000 7153500 6107800 6026800 6477200 7330800 5660700 9271900 526060 9847200 5841500 10771000 7164100 6455100 6226800 6310800 7031400 4 4 3 4 4 4 4 4 4 4 4 5913200 10074000 4624.9 9188700 8302800 7422900 7945800 6340700 6240400 6774800 7815300 5505200 9397100 453010 9410100 7947600 7646500 8025600 6514400 6479100 6598700 7490400 5 5 1 5 5 5 5 5 5 5 5 3272200000 1124900000 2147200000 8669 467 8080 45929;45930;45931;45932;45933;45934;45935;45936;45937;45938 55534;55535;55536;55537;55538;55539;55540;55541;55542;55543 55542 355 10 IFEMGPVFTL Unmodified 1152.5889 0.58891815 467 P00403 MT-CO2 Cytochrome c oxidase subunit 2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.45 1.92 1 1 2 1 2 2 2 5 6 83.97 83.973 2 4.211E-05 29866 20211116_3446_TMUAki_TMT10x_S_F7 134.06 115.33 8841700 14353000 16599 14057000 10860000 11917000 10537000 7535900 6854400 8126500 10664000 8231700 13391000 664730 14329000 10399000 12174000 10591000 7900800 7269500 7912500 10169000 10 10 2 10 10 10 10 10 10 10 10 4561000 7134100 16599 7022300 4524800 7408800 5238800 3899100 3530900 4131600 5372300 4246600 6656500 357050 7177600 4355200 7444900 5223700 4148400 3732200 4025500 5125400 5 5 2 5 5 5 5 5 5 5 5 4280700 7218600 0 7034200 6335500 4508400 5298500 3636800 3323400 3995000 5291600 3985100 6735000 307680 7151300 6043800 4729000 5367600 3752400 3537300 3886900 5043700 5 5 0 5 5 5 5 5 5 5 5 712110000 359960000 352160000 8670 467 8080 45939;45940;45941;45942;45943;45944;45945;45946;45947;45948;45949 55544;55545;55546;55547;55548;55549;55550;55551;55552;55553;55554;55555 55554 12 IFEPPPPK Unmodified 923.51165 0.5116541 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 0 0 By MS/MS 6 0 1 1 51.123 51.265 2 0.0036329 14333 20211116_3445_TMUAki_TMT10x_S_F6 100.45 60.909 2583600 4494800 33692 4211000 2909400 2542400 2719700 3902800 3780400 3514400 3872200 2405900 4193000 250160 4291000 2786900 2723500 2801400 3887800 3802700 3448400 3732500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2583600 4494800 33692 4211000 2909400 2542400 2719700 3902800 3780400 3514400 3872200 2405900 4193000 250160 4291000 2786900 2723500 2801400 3887800 3802700 3448400 3732500 1 1 1 1 1 1 1 1 1 1 1 267910000 0 267910000 8671 196 8081 45950 55556 55556 1 IFEPPPPKK Unmodified 1051.6066 0.60661712 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 0 1 By MS/MS 8 0 1 1 44.932 45.088 3 0.0019195 12124 20211116_3436_TMUAki_TMT10x_P_F8 73.985 45.972 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8672 196 8082 45951 55557 55557 1 IFFAGTETATK Unmodified 1184.6077 0.60773933 757 P21397;P21397-2 MAOA Amine oxidase [flavin-containing] A yes no 0 0 0 0 By MS/MS By MS/MS 7.25 0.433 3 1 2 2 59.481 59.964 2 6.3991E-19 19941 20211116_3446_TMUAki_TMT10x_S_F7 231.23 177.07 35282000 56551000 20066 58268000 49914000 61752000 40356000 56998000 51729000 49041000 50041000 32850000 52775000 3050500 59374000 47615000 62587000 41786000 57953000 52068000 48224000 48325000 5 5 2 5 5 5 5 5 5 5 5 20143000 32577000 10820 30686000 32871000 48830000 27471000 35136000 31529000 29121000 28768000 18755000 30390000 1816200 31709000 31381000 48318000 28273000 36235000 31800000 28689000 27837000 3 3 1 3 3 3 3 3 3 3 3 15139000 23974000 9246.1 27583000 17043000 12922000 12884000 21862000 20201000 19920000 21273000 14095000 22384000 1234300 27665000 16234000 14269000 13513000 21718000 20269000 19535000 20488000 2 2 1 2 2 2 2 2 2 2 2 2728700000 1731300000 997460000 8673 757 8083 45952;45953;45954;45955 55558;55559;55560;55561;55562 55562 5 IFFPGSHPVR Unmodified 1155.6189 0.61891314 2824 Q9H7B4;Q9H7B4-2;Q9H7B4-3 SMYD3 Histone-lysine N-methyltransferase SMYD3 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 44.593 44.443 3 2.2537E-09 12446 20211116_3442_TMUAki_TMT10x_S_F4 147.4 126.92 943270 1528800 0 1705700 1430600 1329200 995510 1217300 1182100 997780 1337800 878200 1427200 75497 1722000 1360200 1374900 1038300 1236700 1200000 983530 1285700 2 2 0 2 2 2 2 2 2 2 2 417280 614010 0 699120 871090 915350 542820 510050 537800 451830 596100 388460 573250 32408 710440 826440 910060 567610 537290 549410 443680 573230 1 1 0 1 1 1 1 1 1 1 1 525990 914770 0 1006600 559520 413890 452690 707220 644320 545950 741680 489740 853920 43089 1011600 533740 464800 470700 699430 650550 539850 712450 1 1 0 1 1 1 1 1 1 1 1 163250000 80475000 82776000 8674 2824 8084 45956;45957;45958 55563;55564;55565 55565 3 IFGGEIK Unmodified 762.42759 0.42759012 533 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 By MS/MS By matching 7 0 2 1 1 53.176 53.786 2 0.021061 16825 20211116_3435_TMUAki_TMT10x_P_F7 86.866 24.151 4560000 6894600 10721 7464900 8417400 8779000 5646300 4883300 4532000 4576700 5739400 4245900 6435500 442070 7594800 8002000 8774900 5837600 5152400 4702100 4482500 5499200 1 1 1 1 1 1 1 1 1 1 1 4560000 6894600 10721 7464900 8417400 8779000 5646300 4883300 4532000 4576700 5739400 4245900 6435500 442070 7594800 8002000 8774900 5837600 5152400 4702100 4482500 5499200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 859100000 488680000 370420000 8675 533 8085 45959;45960 55566 55566 1 IFGGLDMLAEK Unmodified 1192.6162 0.61619553 2357 Q92688;Q92688-2 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B yes no 0 0 0 0 By matching By MS/MS 7 0 2 1 1 78.485 78.534 2 1.0607E-05 27651 20211116_3446_TMUAki_TMT10x_S_F7 117.02 85.949 7177500 9852300 0 12212000 5151500 5453600 7868200 3435100 3200700 4140100 6662900 6682600 9202000 529250 12191000 5005300 5927300 7694500 3615500 3583300 4014400 6320300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7177500 9852300 0 12212000 5151500 5453600 7868200 3435100 3200700 4140100 6662900 6682600 9202000 529250 12191000 5005300 5927300 7694500 3615500 3583300 4014400 6320300 1 1 0 1 1 1 1 1 1 1 1 1262500000 503870000 758640000 8676 2357 8086 45961;45962 55567 55567 1 IFGLLMGTLQK Unmodified 1219.6999 0.69986558 2796 Q9H307 PNN Pinin yes yes 0 0 0 0 By MS/MS By matching 7 0 2 1 1 80.788 80.816 3 5.1477E-06 28187 20211116_3435_TMUAki_TMT10x_P_F7 114.97 77.412 1637600 2479600 10001 2562100 1655400 2640500 1894600 1097400 1108000 1389400 1635100 1524800 2314000 145340 2609100 1593900 2650400 1885000 1202400 1180300 1344900 1561000 1 1 1 1 1 1 1 1 1 1 1 1637600 2479600 10001 2562100 1655400 2640500 1894600 1097400 1108000 1389400 1635100 1524800 2314000 145340 2609100 1593900 2650400 1885000 1202400 1180300 1344900 1561000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 474600000 259750000 214850000 8677 2796 8087 45963;45964 55568 55568 1 IFGVTTLDIVR Unmodified 1232.7129 0.71287311 989 P40926 MDH2 Malate dehydrogenase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4.14 3.09 2 2 1 2 4 3 76.782 76.762 2 2.196E-23 26458 20211116_3429_TMUAki_TMT10x_P_F2 247.58 168.46 76530000 132310000 209820 121850000 100930000 139810000 94011000 96643000 86598000 90428000 101810000 71252000 123420000 6155000 125320000 96567000 140350000 95492000 100250000 88963000 88573000 97739000 9 9 5 9 9 9 9 9 9 9 9 53959000 90936000 125390 83903000 65467000 116140000 68723000 66641000 60831000 62956000 70506000 50236000 84827000 4024500 86574000 62815000 115210000 69294000 70143000 62573000 61638000 67715000 6 6 2 6 6 6 6 6 6 6 6 22571000 41377000 84425 37951000 35462000 23674000 25288000 30002000 25768000 27472000 31302000 21016000 38596000 2130500 38745000 33752000 25140000 26197000 30109000 26390000 26935000 30025000 3 3 3 3 3 3 3 3 3 3 3 12020000000 7101700000 4917900000 8678 989 8088 45965;45966;45967;45968;45969;45970;45971 55569;55570;55571;55572;55573;55574;55575;55576;55577 55571 9 IFHGVGTR Unmodified 885.48209 0.48208531 1720 Q14676;Q14676-2;Q14676-3;Q14676-4 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 32.738 32.674 3 0.0069466 7032 20211116_3428_TMUAki_TMT10x_P_F1 73.665 42.436 770500 1171500 1015.5 1168900 1028300 1064600 871970 669030 747220 760410 891200 717420 1093100 68050 1191100 982060 1082100 888790 702920 770730 738890 855250 3 3 2 3 3 3 3 3 3 3 3 468060 707390 1015.5 717350 752500 826350 535200 427590 479000 489630 544400 435820 660110 43736 732740 716130 826150 552500 456730 492080 475640 523140 2 2 2 2 2 2 2 2 2 2 2 302440 464120 0 451560 275770 238240 336770 241440 268220 270780 346800 281600 433030 24314 458360 265930 255930 336290 246200 278660 263250 332110 1 1 0 1 1 1 1 1 1 1 1 103880000 78616000 25263000 8679 1720 8089 45972;45973;45974 55578;55579;55580 55578 3 IFHINPR Unmodified 895.50282 0.50282075 796 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.8 2.64 2 2 1 3 2 37.033 36.983 3 0.0058033 8637 20211116_3440_TMUAki_TMT10x_S_F2 92.692 55.672 2226500 3471600 0 3772300 3740500 3196100 2364300 2369200 2548300 2432300 2696100 2072800 3240500 159560 3818500 3549000 3272900 2475900 2452400 2589700 2372900 2596300 4 4 0 4 4 4 4 4 4 4 4 1354900 2062900 0 2245800 2935800 2539200 1490800 1468000 1571900 1422200 1636100 1261400 1925600 107660 2282500 2776900 2544600 1590200 1545300 1597900 1390900 1576300 2 2 0 2 2 2 2 2 2 2 2 871600 1408600 0 1526500 804680 656890 873510 901180 976410 1010100 1060000 811390 1314900 51900 1536000 772030 728330 885630 907190 991800 982040 1020000 2 2 0 2 2 2 2 2 2 2 2 189160000 124950000 64206000 8680 796 8090 45975;45976;45977;45978;45979 55581;55582;55583;55584;55585 55585 5 IFHTVTTTDDPVIR Unmodified 1613.8413 0.8413211 185 O15371;O15371-2;O15371-3 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 48.552 48.704 3 4.1357E-14 14069 20211116_3433_TMUAki_TMT10x_P_F5 149.69 118.26 31298000 55525000 156460 63171000 53168000 51858000 35980000 38609000 38026000 33913000 42419000 29140000 51839000 2798200 63735000 50541000 53230000 37458000 39783000 38751000 33314000 40785000 11 11 6 11 11 11 11 11 11 11 11 16858000 31886000 156430 35531000 40315000 41480000 24557000 22276000 22183000 19920000 23493000 15698000 29767000 1855600 36079000 38269000 41459000 25660000 23547000 22718000 19552000 22623000 6 6 5 6 6 6 6 6 6 6 6 14440000 23639000 36.167 27640000 12853000 10378000 11423000 16333000 15843000 13993000 18926000 13443000 22073000 942590 27657000 12273000 11771000 11798000 16235000 16034000 13762000 18162000 5 5 1 5 5 5 5 5 5 5 5 3073800000 1417500000 1656300000 8681 185 8091 45980;45981;45982;45983;45984;45985 55586;55587;55588;55589;55590;55591;55592;55593;55594;55595;55596 55588 11 IFHTVTTTDDPVIRK Unmodified 1741.9363 0.93628412 185 O15371;O15371-2;O15371-3 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 0 0 0 1 By MS/MS 7 0.816 1 1 1 3 45.931 46.127 4 1.8438E-05 14265 20211116_3446_TMUAki_TMT10x_S_F7 98.582 77.629 7836200 13335000 144220 16150000 7089900 5786900 5948800 11478000 11182000 9923700 12045000 7297300 12453000 773630 16121000 6778200 6662400 6255800 11336000 11177000 9756000 11593000 5 5 5 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7836200 13335000 144220 16150000 7089900 5786900 5948800 11478000 11182000 9923700 12045000 7297300 12453000 773630 16121000 6778200 6662400 6255800 11336000 11177000 9756000 11593000 5 5 5 5 5 5 5 5 5 5 5 897680000 0 897680000 8682 185 8092 45986;45987;45988 55597;55598;55599;55600;55601 55599 5 IFIGTFK Unmodified 824.47963 0.47962569 674 P14678;P63162;P14678-2;P14678-3;P63162-2 SNRPB;SNRPN Small nuclear ribonucleoprotein-associated proteins B and B';Small nuclear ribonucleoprotein-associated protein N yes no 0 0 0 0 By MS/MS By MS/MS 3.22 1.31 1 2 2 2 2 5 4 67.321 67.185 2 0.001289 21838 20211116_3442_TMUAki_TMT10x_S_F4 139.27 72.273 146650000 235650000 1192800 225850000 173760000 223970000 177470000 150690000 129840000 147190000 172030000 136560000 219850000 13636000 231070000 166770000 226640000 178350000 156800000 135670000 143900000 164640000 11 11 10 11 11 11 11 11 11 11 11 91873000 143660000 549930 136950000 113530000 171900000 118920000 92580000 79519000 90679000 103620000 85547000 134030000 8418600 140710000 109030000 171180000 119120000 98075000 83476000 88640000 99208000 6 6 5 6 6 6 6 6 6 6 6 54778000 91985000 642900 88900000 60226000 52072000 58552000 58109000 50324000 56515000 68411000 51009000 85820000 5217000 90360000 57744000 55455000 59225000 58728000 52198000 55261000 65434000 5 5 5 5 5 5 5 5 5 5 5 18316000000 9383000000 8933100000 8683 674 8093 45989;45990;45991;45992;45993;45994;45995;45996;45997 55602;55603;55604;55605;55606;55607;55608;55609;55610;55611;55612 55610 11 IFIKPNAQKPLPQALSK Unmodified 1892.1248 0.12475359 1486 Q01780;Q01780-2 EXOSC10 Exosome component 10 yes no 0 0 0 2 By MS/MS 7 0 1 1 55.509 56.034 4 0.00045241 18276 20211116_3446_TMUAki_TMT10x_S_F7 74.12 63.923 8650600 14867000 25731 16195000 8721900 7324700 6656400 13287000 12406000 11553000 13018000 8054800 13878000 742180 16295000 8312600 8143000 7037800 13157000 12391000 11355000 12539000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8650600 14867000 25731 16195000 8721900 7324700 6656400 13287000 12406000 11553000 13018000 8054800 13878000 742180 16295000 8312600 8143000 7037800 13157000 12391000 11355000 12539000 1 1 1 1 1 1 1 1 1 1 1 783890000 0 783890000 8684 1486 8094 45998 55613 55613 1 IFINLPR Unmodified 871.52797 0.52797287 213 O43396 TXNL1 Thioredoxin-like protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 62.674 62.466 2 0.0022968 19431 20211116_3431_TMUAki_TMT10x_P_F4 127.54 71.488 14865000 25583000 38006 24940000 20457000 23458000 16314000 18556000 17872000 17164000 20008000 13841000 23869000 1336100 25467000 19512000 23878000 16813000 19072000 18190000 16821000 19235000 4 4 2 4 4 4 4 4 4 4 4 7396800 12096000 18343 12106000 10671000 16209000 9311700 8941400 8893100 8591700 9640100 6887300 11287000 675770 12411000 10199000 16097000 9503400 9447400 9092100 8405500 9276300 2 2 1 2 2 2 2 2 2 2 2 7468600 13487000 19663 12834000 9785200 7248100 7002100 9614100 8979200 8572400 10368000 6954100 12582000 660370 13056000 9313100 7781600 7309300 9624400 9097600 8415100 9958700 2 2 1 2 2 2 2 2 2 2 2 2448400000 1352000000 1096400000 8685 213 8095 45999;46000;46001;46002;46003;46004 55614;55615;55616;55617;55618 55615 5 IFISNTFNPAK Unmodified 1250.6659 0.66592292 2475 Q96GM5;Q96GM5-2 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 65.329 65.292 2 2.3355E-07 21109 20211116_3442_TMUAki_TMT10x_S_F4 118.03 84.913 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8686 2475 8096 46005;46006 55619;55620 55620 2 IFLENHVR Unmodified 1026.5611 0.56106391 1656 Q13617;Q13617-2 CUL2 Cullin-2 yes no 0 0 0 0 By MS/MS By MS/MS 6.4 1.02 1 2 1 1 2 3 37.739 37.999 3 0.00017202 8626 20211116_3434_TMUAki_TMT10x_P_F6 155.75 94.966 799490 1344100 8057.9 1604700 2913500 1566200 2310700 957780 1887400 874310 1089700 744470 1255200 103150 1618100 2778900 1584200 2362300 1002000 1910300 857340 1075900 4 4 3 4 4 4 4 4 4 4 4 729160 1162500 8057.9 1324400 2818300 1506500 2218400 862470 1795900 779590 1001500 678980 1085300 97222 1342400 2687700 1509000 2268500 906920 1817300 764810 990740 3 3 3 3 3 3 3 3 3 3 3 70330 181640 0 280310 95253 59743 92359 95305 91526 94722 88125 65483 169860 5930.4 275690 91244 75266 93809 95087 93028 92534 85116 1 1 0 1 1 1 1 1 1 1 1 143990000 116560000 27423000 8687 1656 8097 46007;46008;46009;46010;46011 55621;55622;55623;55624;55625 55621 5 IFLLGLADNEAAIVQAESEETK Unmodified 2360.2111 0.21112157 3116 Q9UHB9;Q9UHB9-4;Q9UHB9-2 SRP68 Signal recognition particle subunit SRP68 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 81.22 81.181 3 1.5156E-35 28730 20211116_3430_TMUAki_TMT10x_P_F3 191.95 177.03 3184000 5476200 70344 5256700 3174800 3640400 3838100 2286700 2344700 2753400 3556300 2965100 5109000 329400 5354100 3065100 3777900 3812300 2407300 2493600 2669900 3393100 2 2 2 2 2 2 2 2 2 2 2 1605800 2699400 57263 2514200 1348300 2130400 1620200 1266400 1152900 1344900 1715100 1495600 2518200 182890 2572300 1303100 2174600 1614700 1333500 1213200 1310300 1637100 1 1 1 1 1 1 1 1 1 1 1 1578200 2776700 13080 2742500 1826500 1510000 2217900 1020300 1191800 1408500 1841200 1469500 2590900 146510 2781800 1762000 1603300 2197500 1073700 1280400 1359600 1756000 1 1 1 1 1 1 1 1 1 1 1 1090900000 636670000 454220000 8688 3116 8098 46012;46013 55626;55627 55626 2 IFLLTNNNLLLADQK Unmodified 1728.9774 0.97742065 245 O43795;O43795-2 MYO1B Unconventional myosin-Ib yes no 0 0 0 0 By matching By MS/MS 3 0 2 1 1 79.465 79.403 3 6.2828E-07 29013 20211116_3441_TMUAki_TMT10x_S_F3 113.72 76.877 1695700 3260800 21990 2694100 2516200 2257100 2445300 1840800 2213300 2090900 2156700 1579100 3040500 172570 2781900 2412200 2316900 2476900 1900100 2259800 2031800 2082200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1695700 3260800 21990 2694100 2516200 2257100 2445300 1840800 2213300 2090900 2156700 1579100 3040500 172570 2781900 2412200 2316900 2476900 1900100 2259800 2031800 2082200 1 1 1 1 1 1 1 1 1 1 1 1340500000 422790000 917720000 8689 245 8099 46014;46015 55628 55628 1 IFLSHEELEPDSIER Unmodified 1812.8894 0.8893935 909 P33527;P33527-8;P33527-6;P33527-7;P33527-5;P33527-4;P33527-2;P33527-3;P33527-9 ABCC1 Multidrug resistance-associated protein 1 yes no 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 56.962 56.737 3 0.00011466 19908 20211116_3441_TMUAki_TMT10x_S_F3 82.109 71.004 2019900 3252700 0 3421000 2123200 1781800 1661700 2192800 2184800 2381300 2676300 1880500 3035700 141210 3453600 2022400 1925500 1725800 2214400 2217200 2317900 2566500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2019900 3252700 0 3421000 2123200 1781800 1661700 2192800 2184800 2381300 2676300 1880500 3035700 141210 3453600 2022400 1925500 1725800 2214400 2217200 2317900 2566500 1 1 0 1 1 1 1 1 1 1 1 264300000 0 264300000 8690 909 8100 46016;46017 55629 55629 1 IFNITDNAAIKPGTPLYAAHFRPGQYVDVTAK Unmodified 3487.8252 0.82522411 566 P09001 MRPL3 39S ribosomal protein L3, mitochondrial yes yes 0 0 0 2 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 69.988 70.031 5 1.6231E-20 22601 20211116_3431_TMUAki_TMT10x_P_F4 129.03 117.72 11830000 20325000 153740 20382000 9129400 12643000 10946000 6711700 6777000 6594800 10622000 11016000 18966000 1071700 20674000 8807700 13224000 10879000 7119800 7213300 6445700 10127000 3 3 2 3 3 3 3 3 3 3 3 8660800 15001000 107410 14967000 5171700 8787300 6732600 4504100 4715900 4343200 7146700 8064800 13998000 754700 15179000 5003700 9236900 6685100 4790800 4972100 4248400 6818900 2 2 1 2 2 2 2 2 2 2 2 3169600 5324300 46329 5415200 3957700 3856100 4213600 2207600 2061100 2251700 3475000 2951600 4968500 317000 5494600 3804100 3987400 4194000 2329000 2241200 2197300 3308400 1 1 1 1 1 1 1 1 1 1 1 1884400000 1160600000 723760000 8691 566 8101 46018;46019 55630;55631;55632 55630 3 IFPPETSASVAATPPPSTASAPAAVNSSASADKPLSNMK Oxidation (M) 3782.8673 0.86728444 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 1 1 By MS/MS 8 0 1 1 27.624 27.825 5 4.0885E-07 5087 20211116_3447_TMUAki_TMT10x_S_F8 68.304 59.003 19683 33688 3423.2 36782 24095 20496 18063 34289 33333 31831 27722 18353 31446 4884 37062 23159 22194 19110 34093 33044 31189 26916 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19683 33688 3423.2 36782 24095 20496 18063 34289 33333 31831 27722 18353 31446 4884 37062 23159 22194 19110 34093 33044 31189 26916 1 1 1 1 1 1 1 1 1 1 1 42864000 0 42864000 8692 586 8102 46020 55633 55633 559 1 IFQGNVHNFEK Unmodified 1331.6622 0.66223452 2436 Q96DI7;Q96DI7-2 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes no 0 0 0 0 By MS/MS By matching 7.25 0.829 1 1 2 3 1 46.179 46.374 3 2.1915E-06 13868 20211116_3435_TMUAki_TMT10x_P_F7 120.03 95.18 7809900 12083000 152000 14987000 22073000 20148000 10216000 10740000 11638000 8998100 12032000 7272900 11286000 988920 15162000 20876000 19996000 11026000 11343000 11792000 8859800 11595000 2 2 2 2 2 2 2 2 2 2 2 7809900 12083000 152000 14987000 22073000 20148000 10216000 10740000 11638000 8998100 12032000 7272900 11286000 988920 15162000 20876000 19996000 11026000 11343000 11792000 8859800 11595000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 711120000 673160000 37962000 8693 2436 8103 46021;46022;46023;46024 55634;55635;55636 55635 3 IFQKGESPVDYDGGR Unmodified 1666.7951 0.79509919 1769 Q15084;Q15084-5;Q15084-3;Q15084-4;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 47.957 48.106 3 9.6494E-10 13040 20211116_3445_TMUAki_TMT10x_S_F6 132.4 117.24 18488000 30788000 255540 34935000 35432000 34172000 19931000 36917000 40705000 28025000 32802000 17216000 28744000 1959900 35335000 33596000 34921000 21671000 37130000 40221000 27737000 31888000 7 7 5 7 7 7 7 7 7 7 7 8118200 12409000 222060 14510000 27126000 26081000 13459000 15499000 16781000 11877000 13302000 7560200 11587000 1101800 14827000 25676000 25619000 14469000 16184000 16803000 11749000 12940000 3 3 2 3 3 3 3 3 3 3 3 10370000 18379000 33478 20425000 8306300 8090500 6472500 21417000 23925000 16148000 19500000 9655900 17157000 858110 20508000 7920100 9302300 7201500 20945000 23419000 15988000 18948000 4 4 3 4 4 4 4 4 4 4 4 1816200000 1138100000 678130000 8694 1769 8104 46025;46026;46027;46028 55637;55638;55639;55640;55641;55642;55643 55643 7 IFQNAPTDPTQDFSTQVAK Unmodified 2107.0222 0.02219859 1036 P45974;P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 0 By MS/MS By MS/MS 5.8 0.748 2 2 1 3 2 67.661 67.671 2;3 2.877E-15 22680 20211116_3435_TMUAki_TMT10x_P_F7 134.99 124.38 27760000 49530000 615800 46635000 34588000 47336000 33443000 31552000 29162000 31484000 35437000 25851000 46206000 2943500 47790000 33171000 47824000 33850000 32874000 30078000 30752000 33990000 7 7 6 7 7 7 7 7 7 7 7 18124000 31524000 558930 29548000 23075000 36996000 23637000 19583000 17554000 19482000 22461000 16880000 29408000 2092900 30395000 22173000 36839000 23759000 20787000 18299000 19031000 21516000 4 4 4 4 4 4 4 4 4 4 4 9635000 18006000 56871 17086000 11513000 10339000 9806000 11969000 11608000 12002000 12975000 8971400 16798000 850620 17395000 10998000 10986000 10092000 12088000 11779000 11721000 12474000 3 3 2 3 3 3 3 3 3 3 3 5019100000 2449100000 2570000000 8695 1036 8105 46029;46030;46031;46032;46033 55644;55645;55646;55647;55648;55649;55650;55651 55648 8 IFQPTPPGAR Unmodified 1082.5873 0.58727866 257 O60231 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 yes yes 0 0 0 0 By matching By MS/MS 1 0 2 1 1 44.268 44.163 2 0.0050144 13718 20211116_3439_TMUAki_TMT10x_S_F1 76.825 56.343 918770 1547800 26186 1651600 852310 783390 671950 1685300 1895400 1358200 1622900 855660 1444600 99645 1664600 814290 871880 728890 1658200 1865100 1340000 1574000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 918770 1547800 26186 1651600 852310 783390 671950 1685300 1895400 1358200 1622900 855660 1444600 99645 1664600 814290 871880 728890 1658200 1865100 1340000 1574000 1 1 1 1 1 1 1 1 1 1 1 124140000 96118000 28019000 8696 257 8106 46034;46035 55652 55652 1 IFRDGEEAGAYDGPR Unmodified 1651.759 0.75904803 868 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 1 By MS/MS By MS/MS 2.6 0.879 2 4 7 2 9 6 38.994 38.94 2;3 2.5657E-95 11858 20211116_3429_TMUAki_TMT10x_P_F2 322.81 289.77 32928000 49920000 82034 68637000 68959000 62199000 38409000 46669000 52600000 38900000 48251000 30658000 46651000 3102800 68603000 65345000 63412000 40997000 48001000 52736000 38311000 46680000 22 22 9 22 22 22 22 22 22 22 22 20909000 31889000 22538 43096000 60679000 53971000 31025000 28923000 33759000 24868000 29721000 19467000 29798000 2176000 43336000 57429000 53748000 33105000 30550000 34081000 24454000 28796000 12 12 4 12 12 12 12 12 12 12 12 12019000 18031000 59496 25541000 8280300 8228000 7384000 17746000 18841000 14032000 18530000 11191000 16853000 926790 25267000 7915800 9664000 7891500 17452000 18655000 13857000 17885000 10 10 5 10 10 10 10 10 10 10 10 10116000000 6594700000 3521100000 8697 868 8107 46036;46037;46038;46039;46040;46041;46042;46043;46044;46045;46046;46047;46048;46049;46050 55653;55654;55655;55656;55657;55658;55659;55660;55661;55662;55663;55664;55665;55666;55667;55668;55669;55670;55671;55672;55673;55674;55675;55676;55677;55678 55657 26 IFREDYSITTK Unmodified 1371.7034 0.70343063 2677 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 50.322 50.666 3 2.1034E-08 16110 20211116_3446_TMUAki_TMT10x_S_F7 149.83 121.97 15716000 23277000 37313 26949000 21782000 20444000 15803000 20420000 19632000 17762000 20682000 14633000 21734000 1337800 27135000 20732000 21228000 16461000 20683000 19842000 17457000 19919000 3 3 2 3 3 3 3 3 3 3 3 6375700 9059900 19751 10588000 12492000 12520000 7426200 8012400 7932900 6918400 8229800 5936600 8459600 632660 10722000 11852000 12534000 7813300 8341200 8058700 6801900 7929800 1 1 1 1 1 1 1 1 1 1 1 9340500 14217000 17562 16361000 9289900 7923700 8377300 12408000 11699000 10844000 12452000 8696400 13274000 705170 16413000 8880200 8693300 8648000 12342000 11783000 10655000 11989000 2 2 1 2 2 2 2 2 2 2 2 1705800000 1074300000 631470000 8698 2677 8108 46051;46052;46053;46054 55679;55680;55681 55681 3 IFSGVFVK Unmodified 895.51674 0.51673948 1969 Q6DKI1;Q6DKI1-2 RPL7L1 60S ribosomal protein L7-like 1 yes no 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 70.053 69.876 2 0.0039765 25386 20211116_3441_TMUAki_TMT10x_S_F3 95.531 46.184 3939700 6473700 0 6137900 4510900 3961700 4098000 4714300 4747100 4469800 5207700 3667900 6039400 290090 6252900 4312000 4187100 4198500 4747900 4817300 4375500 5009400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3939700 6473700 0 6137900 4510900 3961700 4098000 4714300 4747100 4469800 5207700 3667900 6039400 290090 6252900 4312000 4187100 4198500 4747900 4817300 4375500 5009400 1 1 0 1 1 1 1 1 1 1 1 229640000 0 229640000 8699 1969 8109 46055;46056 55682;55683 55682 2 IFSIIAEGEMHEAIKHEDPCAK Oxidation (M) 2540.2039 0.20394448 84 O00410;O00410-2;O00410-3 IPO5 Importin-5 yes no 0 0 1 1 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 57.983 57.972 5 2.9738E-10 17667 20211116_3431_TMUAki_TMT10x_P_F4 105.67 89.165 11599000 18760000 42268 18831000 12790000 16755000 12016000 15893000 15804000 15896000 16475000 10800000 17506000 1005100 19174000 12246000 17178000 12346000 16202000 15936000 15525000 15873000 4 4 3 4 4 4 4 4 4 4 4 3778700 5237900 18081 5702900 4451500 7873200 4098600 4458000 4353800 4761100 4556100 3518500 4889300 339550 5817500 4260500 7810000 4183700 4714100 4425300 4637500 4388900 1 1 1 1 1 1 1 1 1 1 1 7820100 13522000 24187 13128000 8338600 8882100 7917600 11435000 11451000 11135000 11919000 7281400 12616000 665500 13357000 7985500 9367800 8162500 11488000 11511000 10887000 11484000 3 3 2 3 3 3 3 3 3 3 3 2737900000 1545100000 1192900000 8700 84 8110 46057;46058;46059;46060 55684;55685;55686;55687 55684 55 4 IFSIIAEGEMHEAIKHEDPCAK Unmodified 2524.209 0.20902986 84 O00410;O00410-2;O00410-3 IPO5 Importin-5 yes no 0 0 0 1 By MS/MS By MS/MS 5.8 1.17 1 1 1 2 3 2 64.278 64.53 5 1.4116E-10 21760 20211116_3446_TMUAki_TMT10x_S_F7 114.72 101.13 29772000 49134000 533460 53062000 34042000 41821000 32718000 20542000 19517000 21784000 32798000 27724000 45862000 2938700 53687000 32635000 42819000 32848000 21997000 20904000 21224000 31228000 7 7 4 7 7 7 7 7 7 7 7 19735000 31174000 126280 33765000 22759000 32952000 22114000 13315000 13049000 13805000 20716000 18375000 29098000 1709600 34251000 21808000 33178000 22184000 14544000 13944000 13463000 19747000 4 4 1 4 4 4 4 4 4 4 4 10038000 17961000 407180 19297000 11283000 8868700 10605000 7227100 6467700 7978700 12082000 9348900 16764000 1229100 19436000 10826000 9641200 10664000 7453400 6960000 7761400 11481000 3 3 3 3 3 3 3 3 3 3 3 3613200000 2308500000 1304700000 8701 84 8110 46061;46062;46063;46064;46065 55688;55689;55690;55691;55692;55693;55694 55694 7 IFSIIAEGEMHEAIKHEDPCAKR Unmodified 2680.3101 0.31014089 84 O00410;O00410-2;O00410-3 IPO5 Importin-5 yes no 0 0 0 2 By MS/MS 7 0 1 1 58.06 58.582 6 0.0061174 19351 20211116_3446_TMUAki_TMT10x_S_F7 51.175 37.987 1960900 3510200 0 3439700 2503200 1817800 1894400 2266300 1968800 2103800 2564800 1825700 3275100 155540 3489800 2383900 1962000 1955700 2276700 2020800 2061400 2455700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1960900 3510200 0 3439700 2503200 1817800 1894400 2266300 1968800 2103800 2564800 1825700 3275100 155540 3489800 2383900 1962000 1955700 2276700 2020800 2061400 2455700 1 1 0 1 1 1 1 1 1 1 1 376490000 0 376490000 8702 84 8111 46066 55695 55695 1 IFSIVEQR Unmodified 990.54983 0.54983053 637 P12081;P12081-4;P12081-3;P12081-2 HARS Histidine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 59.077 59.494 2 0.022354 19137 20211116_3435_TMUAki_TMT10x_P_F7 69.905 21.117 15738000 26330000 44506 26121000 22281000 27889000 19135000 20924000 20249000 20559000 21584000 14654000 24568000 1437900 26689000 21288000 28146000 19608000 21615000 20598000 20094000 20780000 2 2 2 2 2 2 2 2 2 2 2 8506800 14381000 44049 14454000 15187000 21309000 11994000 12169000 11772000 11855000 11895000 7921000 13420000 839880 14843000 14484000 21080000 12326000 12825000 11990000 11591000 11471000 1 1 1 1 1 1 1 1 1 1 1 7231700 11949000 456.6 11666000 7094700 6580200 7141000 8754800 8477400 8703500 9689400 6733400 11148000 598060 11846000 6803900 7066000 7282400 8790000 8608800 8502400 9309500 1 1 1 1 1 1 1 1 1 1 1 880620000 418120000 462500000 8703 637 8112 46067;46068;46069 55696;55697 55696 2 IFSPNVVNLTLVDLPGMTK Oxidation (M) 2073.118 0.11801323 87 O00429;O00429-2;O00429-4;O00429-3;O00429-5;O00429-9;O00429-8;O00429-6 DNM1L Dynamin-1-like protein yes no 0 0 1 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 79.954 79.925 3 4.0317E-13 29182 20211116_3441_TMUAki_TMT10x_S_F3 138.75 125.96 12308000 20340000 143010 18472000 12859000 18436000 15346000 12386000 14846000 14342000 16791000 11461000 18972000 1161400 18976000 12401000 18648000 15421000 12957000 15194000 13926000 16137000 4 4 4 4 4 4 4 4 4 4 4 5101600 8363100 106560 8311100 4829600 8415700 5374400 4810800 5927300 5235300 6751000 4750900 7803500 518460 8483900 4651000 8485900 5440100 5085900 6035100 5095600 6486900 2 2 2 2 2 2 2 2 2 2 2 7206100 11977000 36447 10161000 8029300 10020000 9971700 7575300 8918300 9106300 10040000 6709900 11169000 642930 10492000 7749900 10162000 9980600 7871300 9158800 8830600 9650300 2 2 2 2 2 2 2 2 2 2 2 6698600000 1751800000 4946800000 8704 87 8113 46070;46071;46072 55698;55699;55700;55701 55701 67 4 IFSPNVVNLTLVDLPGMTK Unmodified 2057.1231 0.12309861 87 O00429;O00429-2;O00429-4;O00429-3;O00429-5;O00429-9;O00429-8;O00429-6 DNM1L Dynamin-1-like protein yes no 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 81.152 81.125 3 6.022E-18 27168 20211116_3431_TMUAki_TMT10x_P_F4 153.21 137.62 11209000 16567000 81052 17090000 9318000 12201000 11839000 3894600 3066500 5237900 10543000 10437000 15461000 939880 17325000 9000300 12545000 11605000 4419200 3768800 5060300 9938700 3 3 2 3 3 3 3 3 3 3 3 11209000 16567000 81052 17090000 9318000 12201000 11839000 3894600 3066500 5237900 10543000 10437000 15461000 939880 17325000 9000300 12545000 11605000 4419200 3768800 5060300 9938700 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1953300000 1953300000 0 8705 87 8113 46073;46074 55702;55703;55704 55703 3 IFTASNVSSVPLPAENVTITAGQR Unmodified 2471.302 0.30200227 1685 Q14157;Q14157-1;Q14157-4;Q14157-3;Q14157-5 UBAP2L Ubiquitin-associated protein 2-like yes no 0 0 0 0 By MS/MS By MS/MS 3.29 3.01 3 2 2 4 3 74.212 74.152 2;3 7.7207E-73 23883 20211116_3428_TMUAki_TMT10x_P_F1 253.1 231.34 25731000 42455000 170000 39304000 28175000 34449000 30244000 22249000 19318000 24480000 30366000 23958000 39603000 1622900 40246000 27066000 35120000 30231000 23304000 20523000 23816000 28951000 12 12 3 12 12 12 12 12 12 12 12 14400000 21912000 0 20818000 12505000 21994000 15216000 11929000 10231000 13203000 15034000 13407000 20442000 697990 21333000 12051000 22107000 15138000 12675000 10797000 12842000 14354000 6 6 0 6 6 6 6 6 6 6 6 11331000 20543000 170000 18485000 15670000 12455000 15028000 10320000 9087500 11277000 15331000 10551000 19161000 924890 18913000 15015000 13013000 15093000 10629000 9726500 10974000 14596000 6 6 3 6 6 6 6 6 6 6 6 8073500000 4670800000 3402700000 8706 1685 8114 46075;46076;46077;46078;46079;46080;46081 55705;55706;55707;55708;55709;55710;55711;55712;55713;55714;55715;55716 55706 12 IFTDLQSEGFPVIETSTLTEEGVIK Unmodified 2752.4059 0.40585821 2735 Q9BZE4;Q9BZE4-3;Q9BZE4-2 GTPBP4 Nucleolar GTP-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.2 1.17 2 1 1 1 2 3 80.962 80.955 3 5.3257E-17 26878 20211116_3440_TMUAki_TMT10x_S_F2 128.12 106.73 1933300 3074200 29284 3040300 2133000 2218000 2418700 1465700 1398200 1694300 2252900 1800300 2868400 190380 3091800 2054200 2293400 2406800 1535100 1497500 1645400 2146900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1933300 3074200 29284 3040300 2133000 2218000 2418700 1465700 1398200 1694300 2252900 1800300 2868400 190380 3091800 2054200 2293400 2406800 1535100 1497500 1645400 2146900 2 2 2 2 2 2 2 2 2 2 2 2129400000 640640000 1488800000 8707 2735 8115 46082;46083;46084;46085;46086 55717;55718;55719 55718 3 IFTFAEK Unmodified 854.4538 0.45380487 1219 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 63.05 63.477 2 0.037749 19627 20211116_3436_TMUAki_TMT10x_P_F8 70.525 17.888 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8708 1219 8116 46087;46088 55720;55721 55721 2 IFTPLLHQIELEKPKPIPYIYGSR Unmodified 2851.6 0.60002219 626 P11413;P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 2 By matching By MS/MS 5.67 0.471 1 2 2 1 77.112 77.1 5 2.9432E-23 24900 20211116_3445_TMUAki_TMT10x_S_F6 159.16 154.32 9628200 15651000 0 14438000 14862000 11960000 13386000 9536500 8981000 10203000 11412000 8963800 14600000 743970 14778000 14205000 12283000 13519000 9838400 9415700 9937000 10933000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9628200 15651000 0 14438000 14862000 11960000 13386000 9536500 8981000 10203000 11412000 8963800 14600000 743970 14778000 14205000 12283000 13519000 9838400 9415700 9937000 10933000 1 1 0 1 1 1 1 1 1 1 1 4907500000 1907100000 3000300000 8709 626 8117 46089;46090;46091 55722 55722 1 IFTSIGEDYDER Unmodified 1443.6518 0.65178899 924 P35232;P35232-2 PHB Prohibitin yes no 0 0 0 0 By MS/MS By MS/MS 2.82 1.34 4 3 4 4 2 8 9 61.23 61.058 2;3 7.4627E-60 18483 20211116_3428_TMUAki_TMT10x_P_F1 318.89 252.81 54616000 95733000 49785 98751000 65975000 77406000 53602000 72901000 71168000 68277000 72378000 50846000 89340000 3730200 100210000 62887000 80071000 55562000 74209000 71675000 66873000 69783000 12 12 2 12 12 12 12 12 12 12 12 21952000 38601000 7358 38828000 34767000 49343000 29374000 29739000 28949000 27797000 27729000 20436000 36020000 1478300 39752000 33167000 49178000 30064000 31168000 29426000 27228000 26787000 6 6 1 6 6 6 6 6 6 6 6 32664000 57132000 42427 59923000 31208000 28063000 24228000 43162000 42219000 40480000 44649000 30410000 53320000 2251900 60458000 29720000 30893000 25498000 43042000 42249000 39645000 42996000 6 6 1 6 6 6 6 6 6 6 6 15676000000 9114900000 6560700000 8710 924 8118 46092;46093;46094;46095;46096;46097;46098;46099;46100;46101;46102;46103;46104;46105;46106;46107;46108 55723;55724;55725;55726;55727;55728;55729;55730;55731;55732;55733;55734;55735;55736;55737;55738;55739;55740 55723 18 IFVFEPPPGVK Unmodified 1228.6856 0.68559572 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.14 2.42 5 1 1 3 4 76.675 76.652 2;3 1.1911E-07 25162 20211116_3440_TMUAki_TMT10x_S_F2 121.96 90.584 17183000 27267000 277070 27353000 18763000 25912000 21307000 15050000 15490000 16237000 20830000 16000000 25443000 1621500 27877000 18066000 26242000 21300000 15886000 16202000 15809000 19929000 5 5 3 5 5 5 5 5 5 5 5 11165000 17079000 30429 17558000 11802000 19481000 13852000 9439100 9817200 10183000 12984000 10395000 15939000 879520 17907000 11364000 19501000 13818000 10126000 10276000 9914400 12427000 3 3 1 3 3 3 3 3 3 3 3 6017400 10188000 246640 9794300 6961300 6431500 7455700 5610900 5672500 6054500 7846000 5604600 9504600 741970 9969300 6702200 6741000 7481600 5759500 5926000 5894900 7501500 2 2 2 2 2 2 2 2 2 2 2 2197400000 1414900000 782490000 8711 1695 8119 46109;46110;46111;46112;46113;46114;46115 55741;55742;55743;55744;55745;55746;55747 55747 7 IFVGGIKEDTEEHHLRDYFEQYGK Unmodified 2909.3984 0.39842185 583 P09651;P09651-2;P09651-3;Q32P51 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 0 2 By MS/MS By MS/MS 5.52 2.24 4 1 3 4 6 7 6 16 15 63.126 63.27 3;4;5;6 8.9677E-60 20592 20211116_3435_TMUAki_TMT10x_P_F7 225.23 218.64 524420000 909630000 8401500 891640000 563750000 878290000 654260000 567350000 578780000 610850000 618130000 488340000 848710000 50450000 910690000 543250000 888570000 656580000 593830000 593510000 594800000 595070000 56 56 39 56 56 56 56 56 56 56 56 303770000 523950000 5677500 514560000 326290000 624430000 388050000 330060000 334790000 360850000 339600000 282880000 488870000 30398000 527240000 314730000 622730000 388740000 351360000 343090000 351160000 327450000 34 34 25 34 34 34 34 34 34 34 34 220650000 385670000 2724000 377080000 237470000 253860000 266210000 237290000 243990000 250000000 278530000 205460000 359840000 20052000 383450000 228520000 265840000 267840000 242470000 250420000 243640000 267620000 22 22 14 22 22 22 22 22 22 22 22 79170000000 45232000000 33938000000 8712 583 8120 46116;46117;46118;46119;46120;46121;46122;46123;46124;46125;46126;46127;46128;46129;46130;46131;46132;46133;46134;46135;46136;46137;46138;46139;46140;46141;46142;46143;46144;46145;46146 55748;55749;55750;55751;55752;55753;55754;55755;55756;55757;55758;55759;55760;55761;55762;55763;55764;55765;55766;55767;55768;55769;55770;55771;55772;55773;55774;55775;55776;55777;55778;55779;55780;55781;55782;55783;55784;55785;55786;55787;55788;55789;55790;55791;55792;55793;55794;55795;55796;55797;55798;55799;55800;55801;55802;55803 55770 56 IFVGGIKEDTEEYNLR Unmodified 1881.9472 0.94724273 1168;1169 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 0 1 By MS/MS By MS/MS 4.5 1.71 2 2 2 2 2 2 6 6 60.818 60.87 3 4.3033E-43 18264 20211116_3445_TMUAki_TMT10x_S_F6 232.78 210.46 264760000 448060000 2451700 478960000 290150000 405070000 322560000 308510000 305290000 324520000 356600000 246530000 418210000 23828000 485330000 279120000 415050000 324960000 319030000 313150000 316280000 342410000 18 18 13 18 18 18 18 18 18 18 18 110640000 180590000 1556500 190140000 153060000 239370000 147320000 130550000 130830000 132190000 143660000 103030000 168550000 11194000 194040000 146710000 238380000 149220000 138280000 134280000 129040000 138190000 9 9 8 9 9 9 9 9 9 9 9 154120000 267470000 895210 288820000 137090000 165700000 175240000 177960000 174450000 192330000 212940000 143500000 249660000 12634000 291290000 132410000 176670000 175740000 180750000 178880000 187250000 204220000 9 9 5 9 9 9 9 9 9 9 9 36058000000 19910000000 16148000000 8713 1168;1169 8121 46147;46148;46149;46150;46151;46152;46153;46154;46155;46156;46157;46158 55804;55805;55806;55807;55808;55809;55810;55811;55812;55813;55814;55815;55816;55817;55818;55819;55820;55821;55822 55819 19 IFVGGIKEDTEEYNLRDYFEK Unmodified 2564.2435 0.24348433 1168;1169 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 0 2 By MS/MS By MS/MS 4.93 2.12 1 1 2 2 2 2 2 2 8 6 73.826 73.798 4 4.5911E-68 23211 20211116_3444_TMUAki_TMT10x_S_F5 253.83 238.33 406590000 659860000 3219100 597430000 522490000 605080000 522250000 445910000 420670000 444620000 498350000 378570000 615490000 35002000 614000000 500960000 612370000 526610000 461370000 435160000 434290000 478340000 23 23 12 23 23 23 23 23 23 23 23 202360000 316850000 1968400 291990000 190790000 375510000 248940000 219270000 208240000 219170000 237660000 188420000 295560000 16694000 300880000 184400000 373890000 248210000 230820000 214680000 214050000 228350000 12 12 7 12 12 12 12 12 12 12 12 204230000 343010000 1250800 305440000 331710000 229570000 273310000 226640000 212430000 225450000 260690000 190150000 319920000 18308000 313120000 316560000 238480000 278400000 230550000 220480000 220240000 249980000 11 11 5 11 11 11 11 11 11 11 11 59171000000 31827000000 27345000000 8714 1168;1169 8122 46159;46160;46161;46162;46163;46164;46165;46166;46167;46168;46169;46170;46171;46172 55823;55824;55825;55826;55827;55828;55829;55830;55831;55832;55833;55834;55835;55836;55837;55838;55839;55840;55841;55842;55843;55844;55845 55838 23 IFVGGIPHNCGETELR Unmodified 1797.8832 0.88320269 2447 Q96EP5;Q96EP5-2 DAZAP1 DAZ-associated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 1.12 2 2 2 2 4 4 49.988 50.245 3 3.3304E-21 13912 20211116_3445_TMUAki_TMT10x_S_F6 162.7 140.71 46037000 88359000 501220 84700000 70313000 83974000 56414000 73569000 67413000 65840000 65425000 42867000 82435000 3584000 86656000 67085000 85358000 58291000 75093000 68029000 64621000 63175000 9 9 4 9 9 9 9 9 9 9 9 26374000 53242000 239790 50033000 52708000 65611000 40690000 44649000 39877000 39296000 37572000 24558000 49668000 1869700 51501000 50244000 65408000 41877000 46294000 40522000 38599000 36315000 4 4 2 4 4 4 4 4 4 4 4 19663000 35117000 261420 34667000 17605000 18363000 15724000 28920000 27536000 26544000 27853000 18309000 32766000 1714300 35154000 16841000 19950000 16414000 28800000 27508000 26022000 26859000 5 5 2 5 5 5 5 5 5 5 5 9709200000 4935200000 4774000000 8715 2447 8123 46173;46174;46175;46176;46177;46178;46179;46180 55846;55847;55848;55849;55850;55851;55852;55853;55854 55853 9 IFVGGIPHNCGETELREYFK Unmodified 2365.1525 0.15250126 2447 Q96EP5;Q96EP5-2 DAZAP1 DAZ-associated protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 7.33 0.745 1 2 3 3 3 63.566 63.829 3;4 4.2894E-51 19240 20211116_3447_TMUAki_TMT10x_S_F8 225.68 213.72 28603000 43827000 800490 49345000 29714000 36756000 28270000 22356000 20938000 24407000 30895000 26638000 40916000 3100300 49762000 28501000 37898000 28524000 23519000 21975000 23752000 29495000 4 4 3 4 4 4 4 4 4 4 4 16563000 25141000 715060 28207000 14717000 25912000 16044000 12616000 12174000 14316000 17084000 15427000 23471000 2013800 28525000 14188000 26240000 16085000 13549000 12728000 13912000 16329000 2 2 2 2 2 2 2 2 2 2 2 12040000 18685000 85425 21138000 14997000 10844000 12226000 9740200 8764400 10091000 13811000 11210000 17444000 1086500 21237000 14314000 11657000 12439000 9969300 9246800 9840600 13167000 2 2 1 2 2 2 2 2 2 2 2 6459600000 3676800000 2782800000 8716 2447 8124 46181;46182;46183;46184;46185;46186 55855;55856;55857;55858;55859 55858 5 IFVGGIPHNCGETELREYFKK Unmodified 2493.2475 0.24746427 2447 Q96EP5;Q96EP5-2 DAZAP1 DAZ-associated protein 1 yes no 0 0 0 2 By MS/MS By MS/MS 3.83 2.97 1 3 2 3 3 61.034 60.942 4;5 4.9837E-35 20083 20211116_3429_TMUAki_TMT10x_P_F2 192.16 181.32 33884000 60774000 88302 50138000 54784000 68256000 37849000 53121000 40250000 48062000 46196000 31543000 56669000 2379400 52172000 52056000 68077000 39351000 54622000 41054000 47148000 44379000 5 5 2 5 5 5 5 5 5 5 5 19923000 34340000 34634 25780000 23646000 50404000 23382000 29849000 23189000 27582000 24502000 18549000 32011000 1515500 27273000 22654000 49367000 23725000 31318000 23646000 27031000 23596000 3 3 1 3 3 3 3 3 3 3 3 13961000 26434000 53668 24358000 31138000 17852000 14467000 23272000 17061000 20480000 21693000 12994000 24658000 863890 24899000 29403000 18710000 15626000 23304000 17408000 20117000 20784000 2 2 1 2 2 2 2 2 2 2 2 11416000000 6101000000 5314600000 8717 2447 8125 46187;46188;46189;46190;46191;46192 55860;55861;55862;55863;55864 55861 5 IFVGGLNPEATEEK Unmodified 1502.7617 0.76167379 2601 Q99729-3;Q99729-2 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 0 0 0 0 By MS/MS By MS/MS 4.22 1.31 2 4 4 4 4 10 8 63.724 63.625 2;3 1.1863E-84 19057 20211116_3444_TMUAki_TMT10x_S_F5 341.46 280.25 150430000 259010000 1308800 276310000 210050000 265150000 171620000 253490000 251960000 225550000 233660000 140070000 241740000 12818000 280490000 200460000 270540000 178570000 257490000 252160000 221440000 225970000 27 27 14 27 27 27 27 27 27 27 27 68403000 115250000 512270 122750000 127210000 185930000 104300000 114060000 116500000 101890000 104350000 63691000 107570000 6556600 125640000 121400000 183900000 107370000 119230000 117560000 100010000 101040000 14 14 6 14 14 14 14 14 14 14 14 82026000 143750000 796560 153560000 82842000 79214000 67319000 139430000 135460000 123660000 129300000 76376000 134170000 6261600 154850000 79057000 86637000 71206000 138250000 134600000 121430000 124920000 13 13 8 13 13 13 13 13 13 13 13 30263000000 17412000000 12850000000 8718 2601 8126 46193;46194;46195;46196;46197;46198;46199;46200;46201;46202;46203;46204;46205;46206;46207;46208;46209;46210 55865;55866;55867;55868;55869;55870;55871;55872;55873;55874;55875;55876;55877;55878;55879;55880;55881;55882;55883;55884;55885;55886;55887;55888;55889;55890;55891 55887 27 IFVGGLSANTVVEDVK Unmodified 1646.8879 0.88793694 2435 Q96DH6;Q96DH6-2;Q96DH6-3 MSI2 RNA-binding protein Musashi homolog 2 yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.745 1 2 3 3 3 76.203 76.239 2;3 1.2463E-46 26693 20211116_3446_TMUAki_TMT10x_S_F7 246.3 220.26 21322000 33181000 261010 32250000 21334000 28466000 24358000 18174000 18600000 19633000 23447000 19855000 30958000 2011200 32910000 20548000 29002000 24371000 19041000 19346000 19114000 22468000 6 6 6 6 6 6 6 6 6 6 6 11469000 17250000 156820 17172000 10250000 18807000 12314000 9826100 10152000 10413000 12510000 10680000 16096000 1080000 17548000 9889300 18856000 12316000 10461000 10506000 10146000 11995000 3 3 3 3 3 3 3 3 3 3 3 9852900 15931000 104180 15078000 11085000 9659300 12043000 8347600 8447500 9219700 10937000 9174800 14862000 931230 15362000 10659000 10145000 12054000 8579600 8839600 8968500 10473000 3 3 3 3 3 3 3 3 3 3 3 2232900000 1150200000 1082800000 8719 2435 8127 46211;46212;46213;46214;46215;46216 55892;55893;55894;55895;55896;55897 55897 6 IFVGGLSPDTPEEK Unmodified 1487.7508 0.75077476 1675 Q14103;Q14103-3;Q14103-4;Q14103-2 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 1.62 3 4 4 4 4 3 11 11 63.75 63.74 2;3 1.3188E-60 20179 20211116_3433_TMUAki_TMT10x_P_F5 308.61 243.9 170240000 282800000 1351300 290150000 219210000 287010000 187020000 269990000 262340000 239090000 243050000 158510000 263910000 15401000 295440000 209420000 292200000 193720000 274450000 262910000 234780000 235060000 30 30 17 30 30 30 30 30 30 30 30 88821000 143010000 1127600 142860000 137530000 212300000 123070000 133530000 130590000 119840000 119690000 82707000 133440000 8701000 146780000 131550000 210230000 125820000 139330000 132140000 117610000 115790000 17 17 10 17 17 17 17 17 17 17 17 81418000 139790000 223730 147300000 81678000 74706000 63949000 136460000 131750000 119250000 123370000 75807000 130470000 6699900 148650000 77867000 81971000 67892000 135110000 130770000 117170000 119270000 13 13 7 13 13 13 13 13 13 13 13 44916000000 24171000000 20746000000 8720 1675 8128 46217;46218;46219;46220;46221;46222;46223;46224;46225;46226;46227;46228;46229;46230;46231;46232;46233;46234;46235;46236;46237;46238 55898;55899;55900;55901;55902;55903;55904;55905;55906;55907;55908;55909;55910;55911;55912;55913;55914;55915;55916;55917;55918;55919;55920;55921;55922;55923;55924;55925;55926;55927;55928 55910 31 IFVGNVDGADTTPEELAALFAPYGTVMSCAVMK 2 Oxidation (M) 3505.6455 0.64552969 2534 Q96PK6;Q96PK6-2;Q96PK6-3;Q96PK6-4 RBM14 RNA-binding protein 14 no no 0 0 2 0 By MS/MS By MS/MS 6.38 1.32 1 1 2 2 2 5 3 81.874 81.882 4 1.3728E-15 26870 20211116_3445_TMUAki_TMT10x_S_F6 102.49 93.76 7045900 12589000 75674 9952700 8730900 13949000 9087600 12597000 11011000 12291000 11149000 6560700 11737000 439430 10399000 8383100 13934000 9258900 12867000 11122000 12016000 10751000 12 12 6 12 12 12 12 12 12 12 12 4129000 6751800 68727 5562000 3664600 8600000 4184900 5941000 5090100 6145800 5757800 3845000 6295700 321180 5803600 3530700 8514000 4245700 6180800 5162400 5993900 5533700 7 7 5 7 7 7 7 7 7 7 7 2916900 5837400 6946.4 4390700 5066300 5349500 4902800 6655900 5920700 6144800 5391200 2715700 5441500 118250 4595700 4852400 5419900 5013200 6686000 5960000 6022400 5217100 5 5 1 5 5 5 5 5 5 5 5 3470700000 2181000000 1289700000 8721 2534 8129 46239;46240;46241;46242;46243;46244;46245;46246 55929;55930;55931;55932;55933;55934;55935;55936;55937;55938;55939;55940 55936 2788;2789 12 IFVGNVSAACTSQELR Unmodified 1750.8672 0.86721827 2534 Q96PK6;Q96PK6-2;Q96PK6-3;Q96PK6-4 RBM14 RNA-binding protein 14 no no 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 2 4 4 6 4 56.693 57.036 2;3 1.6708E-93 18122 20211116_3435_TMUAki_TMT10x_P_F7 350.96 317.58 21486000 36843000 219310 36767000 29420000 36315000 23865000 31496000 26654000 28618000 30191000 20005000 34378000 1801500 37507000 28064000 36915000 24584000 32180000 27120000 28069000 29015000 10 10 5 10 10 10 10 10 10 10 10 10987000 18416000 3036.2 18238000 17404000 25846000 15092000 15815000 13213000 14090000 14688000 10228000 17184000 760770 18732000 16614000 25636000 15371000 16534000 13577000 13832000 14124000 5 5 1 5 5 5 5 5 5 5 5 10499000 18427000 216270 18529000 12016000 10469000 8773200 15682000 13441000 14529000 15503000 9777200 17194000 1040700 18775000 11450000 11279000 9213100 15646000 13543000 14237000 14891000 5 5 4 5 5 5 5 5 5 5 5 9064100000 4380700000 4683400000 8722 2534 8130 46247;46248;46249;46250;46251;46252;46253;46254;46255;46256 55941;55942;55943;55944;55945;55946;55947;55948;55949;55950;55951;55952 55944 12 IFVMATHGLLSSDAPR Unmodified 1713.8872 0.88722543 259 O60256;O60256-4;O60256-2 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 65.352 65.319 3 0.00050013 21164 20211116_3442_TMUAki_TMT10x_S_F4 68.413 5.9378 4239900 7287800 53797 7114600 4624400 4153900 3822300 4540200 4353000 4149300 5254400 3948200 6799600 407040 7226000 4417200 4423000 3935500 4585000 4437100 4068500 5040800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4239900 7287800 53797 7114600 4624400 4153900 3822300 4540200 4353000 4149300 5254400 3948200 6799600 407040 7226000 4417200 4423000 3935500 4585000 4437100 4068500 5040800 1 1 1 1 1 1 1 1 1 1 1 703500000 314020000 389480000 8723 259 8131 46257;46258;46259 55953;55954 55954 2 IFVNDDR Unmodified 877.42938 0.42938104 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 0 By MS/MS 3 0 1 1 40.743 40.441 2 0.015501 13220 20211116_3441_TMUAki_TMT10x_S_F3 86.833 53.036 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8724 1576 8132 46260 55955 55955 1 IFVNDDRHVMAK Oxidation (M) 1459.7242 0.72418285 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 1 1 By MS/MS By MS/MS 5.8 0.748 2 2 1 3 2 34.318 34.458 3;4 3.8105E-07 7223 20211116_3444_TMUAki_TMT10x_S_F5 122.52 97.585 1779100 2884500 16157 2960400 3405600 2940000 2078400 1804100 1942800 1695900 2370100 1656600 2691800 180840 3014400 3232700 2970800 2173400 1888400 1997600 1660800 2273200 5 5 4 5 5 5 5 5 5 5 5 1198100 1922300 5721.4 1976400 2752900 2401400 1423300 1149100 1229300 1051700 1558900 1115500 1793900 121940 2018800 2606200 2392000 1507200 1228600 1270800 1031200 1493600 3 3 2 3 3 3 3 3 3 3 3 581080 962150 10436 984020 652670 538570 655140 654960 713500 644220 811250 541120 897870 58904 995660 626510 578750 666220 659720 726780 629620 779560 2 2 2 2 2 2 2 2 2 2 2 276550000 131590000 144960000 8725 1576 8133 46261;46262;46263;46264;46265 55956;55957;55958;55959;55960 55959 2131 5 IFVNDDRHVMAK Unmodified 1443.7293 0.72926823 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 1 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 39.11 39.316 4 1.1508E-11 9274 20211116_3434_TMUAki_TMT10x_P_F6 160.69 131.88 3820600 5601300 35646 6711700 9316300 6612300 4521200 2848700 2858600 2816400 4626300 3557600 5230800 421840 6767100 8814200 6657700 4785300 3085300 3043600 2752000 4408100 5 5 3 5 5 5 5 5 5 5 5 3311200 4833000 35646 5847400 8789600 6258600 3971300 2540400 2559200 2495500 4009500 3083400 4513500 384470 5899900 8308900 6267000 4236500 2769200 2716800 2439100 3823000 3 3 3 3 3 3 3 3 3 3 3 509360 768310 0 864280 526740 353680 549830 308280 299360 320880 616770 474230 717270 37368 867290 505310 390780 548760 316100 326770 312870 585150 2 2 0 2 2 2 2 2 2 2 2 386390000 359060000 27333000 8726 1576 8133 46266;46267;46268 55961;55962;55963;55964;55965 55961 5 IFVNSNTDVAPFLR Unmodified 1591.8358 0.83584179 2476 Q96GQ7 DDX27 Probable ATP-dependent RNA helicase DDX27 yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 2 4 3 3 75.098 75.035 2;3 5.7306E-51 24142 20211116_3428_TMUAki_TMT10x_P_F1 286.86 235.79 14517000 25275000 80262 21914000 17681000 23759000 19143000 16766000 16380000 17117000 19720000 13517000 23572000 1271500 22621000 16992000 23934000 19256000 17410000 16903000 16703000 18920000 6 6 3 6 6 6 6 6 6 6 6 7103000 11914000 64089 10370000 7340100 14778000 9543500 8242600 7953000 8541700 9545400 6613800 11111000 615770 10755000 7094900 14636000 9515900 8719300 8216900 8329900 9158800 3 3 1 3 3 3 3 3 3 3 3 7413800 13361000 16174 11544000 10341000 8981300 9599600 8523500 8426700 8575200 10174000 6903000 12460000 655760 11867000 9897000 9297400 9739700 8690800 8686100 8372900 9760800 3 3 2 3 3 3 3 3 3 3 3 1699900000 998860000 701060000 8727 2476 8134 46269;46270;46271;46272;46273;46274 55966;55967;55968;55969;55970;55971;55972;55973 55966 8 IFYHPETTQLMILSASEATVK Oxidation (M) 2394.2141 0.21409846 1148 P51114;P51114-2;P51114-3 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 0 0 1 0 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 70.569 70.802 3 2.975E-26 22587 20211116_3436_TMUAki_TMT10x_P_F8 160.55 150.49 9109500 16711000 74211 14006000 10320000 18800000 11427000 11509000 11973000 11995000 12280000 8482400 15583000 835020 14551000 9927000 18692000 11550000 12085000 12168000 11695000 11836000 6 6 5 6 6 6 6 6 6 6 6 6246900 11965000 70634 9913700 6506000 15430000 7922800 8285500 8548100 8540000 8450800 5817000 11157000 587370 10341000 6278100 15219000 7981700 8792300 8665400 8330100 8155200 4 4 4 4 4 4 4 4 4 4 4 2862600 4746000 3577.5 4092400 3813700 3369200 3504400 3224000 3425000 3455200 3829000 2665400 4426100 247650 4210300 3648800 3473700 3568400 3292200 3502200 3365000 3681200 2 2 1 2 2 2 2 2 2 2 2 1655700000 1090500000 565260000 8728 1148 8135 46275;46276;46277 55974;55975;55976;55977;55978;55979 55976 1531 6 IFYHPETTQLMILSASEATVKR Oxidation (M) 2550.3152 0.31520949 1148 P51114;P51114-2;P51114-3 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 0 0 1 1 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 63.612 63.493 4 2.8725E-07 19859 20211116_3440_TMUAki_TMT10x_S_F2 85.498 71.626 5381300 10084000 114840 8398500 6770100 11567000 7210700 8710500 8094600 8031100 8033900 5011400 9402900 572620 8734200 6509500 11524000 7318500 8980000 8194100 7871600 7751900 2 2 2 2 2 2 2 2 2 2 2 3376400 6426000 104740 5179200 4182300 9152200 4805900 5939600 5659600 5591400 5228400 3144600 5991500 388830 5431100 4032200 9006400 4868600 6190700 5705000 5475200 5057000 1 1 1 1 1 1 1 1 1 1 1 2004800 3657800 10097 3219300 2587900 2415200 2404800 2770800 2435000 2439700 2805600 1866800 3411400 183790 3303100 2477400 2518000 2449800 2789300 2489000 2396400 2695000 1 1 1 1 1 1 1 1 1 1 1 1411600000 740680000 670940000 8729 1148 8136 46278;46279 55980;55981 55981 1531 2 IFYPEIEEVQALDDTER Unmodified 2065.9844 0.9844161 908 P33316;P33316-2 DUT Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 1.96 0.626 12 34 10 41 15 45.103 45.023 2;3 4.3664E-104 27762 20211116_3439_TMUAki_TMT10x_S_F1 329.49 287.95 39674000 65265000 497490 61489000 40721000 58837000 47358000 33592000 35995000 40600000 47286000 36942000 60885000 3377300 62956000 39226000 59536000 47339000 35638000 37517000 39363000 45265000 57 57 30 57 57 57 57 57 57 57 57 24493000 39085000 191220 37101000 21558000 40819000 27018000 20038000 21710000 24329000 27922000 22806000 36463000 1878600 38045000 20811000 40887000 26955000 21550000 22539000 23584000 26743000 42 42 23 42 42 42 42 42 42 42 42 15181000 26180000 306270 24388000 19162000 18018000 20341000 13554000 14286000 16271000 19364000 14136000 24422000 1498800 24912000 18415000 18648000 20384000 14088000 14978000 15779000 18523000 15 15 7 15 15 15 15 15 15 15 15 21153000000 13229000000 7924200000 8730 908 8137 46280;46281;46282;46283;46284;46285;46286;46287;46288;46289;46290;46291;46292;46293;46294;46295;46296;46297;46298;46299;46300;46301;46302;46303;46304;46305;46306;46307;46308;46309;46310;46311;46312;46313;46314;46315;46316;46317;46318;46319;46320;46321;46322;46323;46324;46325;46326;46327;46328;46329;46330;46331;46332;46333;46334;46335 55982;55983;55984;55985;55986;55987;55988;55989;55990;55991;55992;55993;55994;55995;55996;55997;55998;55999;56000;56001;56002;56003;56004;56005;56006;56007;56008;56009;56010;56011;56012;56013;56014;56015;56016;56017;56018;56019;56020;56021;56022;56023;56024;56025;56026;56027;56028;56029;56030;56031;56032;56033;56034;56035;56036;56037;56038;56039;56040;56041;56042;56043;56044;56045;56046;56047 56041 66 IFYPEIEEVQALDDTERGSGGFGSTGKN Unmodified 3015.4098 0.40977439 908 P33316;P33316-2 DUT Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial yes no 0 0 0 2 By MS/MS By MS/MS 2.33 1.01 4 4 5 2 6 9 73.547 73.487 3;4 1.3167E-63 27254 20211116_3430_TMUAki_TMT10x_P_F3 218.93 206.62 72150000 123780000 809600 111900000 94208000 103410000 86948000 71953000 66479000 73631000 91682000 67183000 115460000 5588300 114860000 90176000 105160000 87941000 74794000 69421000 71843000 87662000 18 18 10 18 18 18 18 18 18 18 18 34327000 55658000 100850 50657000 28752000 57330000 35068000 34441000 32085000 33834000 41732000 31960000 51916000 2329000 52132000 27715000 57478000 35148000 36154000 33114000 33069000 39958000 7 7 3 7 7 7 7 7 7 7 7 37823000 68124000 708750 61239000 65456000 46079000 51880000 37512000 34394000 39797000 49950000 35222000 63541000 3259300 62733000 62461000 47685000 52793000 38640000 36307000 38774000 47703000 11 11 7 11 11 11 11 11 11 11 11 33348000000 17120000000 16228000000 8731 908 8138 46336;46337;46338;46339;46340;46341;46342;46343;46344;46345;46346;46347;46348;46349;46350 56048;56049;56050;56051;56052;56053;56054;56055;56056;56057;56058;56059;56060;56061;56062;56063;56064;56065 56052 18 IFYPETTDIYDRK Unmodified 1659.8144 0.81443765 1059 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 1 By MS/MS By MS/MS 6.25 0.829 1 1 2 2 2 58.357 58.395 3 4.0371E-10 17328 20211116_3445_TMUAki_TMT10x_S_F6 139.78 90.154 4439800 7971900 63669 9103200 5779200 4787400 4129600 6687600 6985000 7052200 7395800 4134300 7442900 446180 9142400 5503700 5186000 4363500 6714500 6995700 6872500 7121800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4439800 7971900 63669 9103200 5779200 4787400 4129600 6687600 6985000 7052200 7395800 4134300 7442900 446180 9142400 5503700 5186000 4363500 6714500 6995700 6872500 7121800 1 1 1 1 1 1 1 1 1 1 1 751710000 0 751710000 8732 1059 8139 46351;46352;46353;46354 56066;56067;56068;56069 56069 4 IGAADYQPTEQDILR Unmodified 1688.837 0.836964 576 P09471;P09471-2 GNAO1 Guanine nucleotide-binding protein G(o) subunit alpha yes no 0 0 0 0 By MS/MS 3 0 1 1 57.185 56.953 2 2.0696E-23 18902 20211116_3430_TMUAki_TMT10x_P_F3 181.46 131.14 1116600 1777200 6926.3 1899300 1799300 2827100 1530500 1853200 1855600 1706200 1653600 1039700 1658800 108590 1942800 1718900 2800900 1576500 1928900 1866400 1672400 1601500 1 1 1 1 1 1 1 1 1 1 1 1116600 1777200 6926.3 1899300 1799300 2827100 1530500 1853200 1855600 1706200 1653600 1039700 1658800 108590 1942800 1718900 2800900 1576500 1928900 1866400 1672400 1601500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 286230000 286230000 0 8733 576 8140 46355 56070 56070 1 IGADFLAR Unmodified 861.47085 0.47085192 703 P17174;P17174-2 GOT1 Aspartate aminotransferase, cytoplasmic yes no 0 0 0 0 By MS/MS 6 0 1 1 53.858 53.951 2 0.075322 15062 20211116_3434_TMUAki_TMT10x_P_F6 60.682 16.287 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8734 703 8141 46356 56071 56071 1 IGAEVYHNLK Unmodified 1142.6084 0.60840804 520 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 0 By MS/MS By MS/MS 5.25 2.28 1 2 2 3 2 2 7 5 44.27 44.435 2;3 1.8381E-05 11222 20211116_3434_TMUAki_TMT10x_P_F6 104.89 65.867 40801000 63058000 804230 70589000 63847000 66989000 41287000 43210000 36214000 39901000 49610000 37995000 58868000 4454900 71024000 60689000 67932000 42871000 45034000 37539000 39106000 47442000 11 11 11 10 10 11 10 11 11 11 11 25076000 37237000 490160 40409000 50621000 54527000 27467000 25558000 20931000 22930000 28549000 23351000 34758000 2893500 40808000 47973000 54027000 28839000 27369000 21850000 22502000 27305000 5 5 5 4 4 5 4 5 5 5 5 15725000 25821000 314070 30180000 13227000 12461000 13820000 17652000 15284000 16972000 21060000 14644000 24110000 1561400 30216000 12716000 13904000 14033000 17665000 15689000 16604000 20137000 6 6 6 6 6 6 6 6 6 6 6 7814400000 5219400000 2594900000 8735 520 8142 46357;46358;46359;46360;46361;46362;46363;46364;46365;46366;46367;46368 56072;56073;56074;56075;56076;56077;56078;56079;56080;56081;56082;56083;56084 56076 13 IGAFGYMECSAK Oxidation (M) 1348.5792 0.5791581 1314 P61586 RHOA Transforming protein RhoA yes yes 0 0 1 0 By MS/MS By MS/MS 6.2 0.4 4 1 2 3 51.737 51.928 2;3 0.00076712 16626 20211116_3446_TMUAki_TMT10x_S_F7 84.213 73.887 18025000 27881000 44706 33541000 29791000 27185000 19176000 28520000 30043000 22414000 27633000 16781000 26037000 1498600 33723000 28287000 28116000 20343000 28747000 30002000 22142000 26731000 5 5 3 5 5 5 5 5 5 5 5 6961700 10983000 26622 13255000 20461000 19160000 10997000 11588000 11659000 9376400 10834000 6481100 10257000 639800 13450000 19373000 18984000 11670000 12098000 11803000 9248600 10477000 2 2 1 2 2 2 2 2 2 2 2 11063000 16898000 18085 20286000 9329500 8025200 8179800 16933000 18384000 13038000 16799000 10300000 15780000 858840 20272000 8914500 9132000 8673100 16650000 18200000 12894000 16254000 3 3 2 3 3 3 3 3 3 3 3 1804700000 836070000 968610000 8736 1314 8143 46369;46370;46371;46372;46373 56085;56086;56087;56088;56089 56089 1772 5 IGAFGYMECSAK Unmodified 1332.5842 0.58424348 1314 P61586 RHOA Transforming protein RhoA yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 3 1 2 60.209 60.824 2;3 8.4216E-12 19665 20211116_3435_TMUAki_TMT10x_P_F7 170.99 157.23 26829000 40834000 161810 51329000 32085000 28548000 26873000 12655000 9767800 13998000 26954000 24980000 38142000 2258800 51282000 30631000 30131000 27001000 13709000 11295000 13616000 25470000 2 2 1 2 2 2 2 2 2 2 2 14256000 20408000 0 25100000 19436000 20132000 16856000 6616300 4934500 7032200 12834000 13272000 19060000 1064600 25200000 18559000 20512000 16864000 7421600 5822000 6850900 12136000 1 1 0 1 1 1 1 1 1 1 1 12573000 20426000 161810 26229000 12649000 8416100 10017000 6038300 4833300 6965600 14120000 11708000 19082000 1194200 26082000 12072000 9619100 10137000 6287100 5473400 6764800 13333000 1 1 1 1 1 1 1 1 1 1 1 1826500000 978570000 847890000 8737 1314 8143 46374;46375;46376 56090;56091;56092 56090 3 IGAREPEEAHK Unmodified 1235.6258 0.62584901 1933 Q5SY16 NOL9 Polynucleotide 5'-hydroxyl-kinase NOL9 yes yes 0 0 0 1 By MS/MS 4 0 1 1 27.754 27.803 4 0.037067 5471 20211116_3431_TMUAki_TMT10x_P_F4 53.08 37.324 137640 165780 0 167820 147830 199300 128780 86297 70448 101220 132610 128130 154700 7373 171530 141000 198550 129820 93891 76427 98239 126000 1 1 0 1 1 1 1 1 1 1 1 137640 165780 0 167820 147830 199300 128780 86297 70448 101220 132610 128130 154700 7373 171530 141000 198550 129820 93891 76427 98239 126000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2107300 2107300 0 8738 1933 8144 46377 56093 56093 1 IGASFLQR Unmodified 890.4974 0.49740102 471 P00505;P00505-2 GOT2 Aspartate aminotransferase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 49.526 49.415 2 0.00041459 15366 20211116_3429_TMUAki_TMT10x_P_F2 142.64 79.666 18252000 28700000 18448 35851000 37025000 30101000 19478000 24474000 24520000 22659000 26250000 16994000 26807000 1696000 35983000 35055000 30893000 20831000 25113000 24786000 22205000 25268000 7 7 3 7 7 7 7 7 7 7 7 10340000 15907000 9398.3 19764000 29746000 24643000 13447000 13766000 13712000 12646000 14621000 9627100 14857000 1087900 19963000 28109000 24559000 14500000 14511000 13970000 12397000 14076000 4 4 2 4 4 4 4 4 4 4 4 7912400 12793000 9049.3 16088000 7279200 5458100 6031400 10708000 10809000 10013000 11628000 7366900 11950000 608170 16020000 6945700 6334000 6331000 10602000 10816000 9807900 11192000 3 3 1 3 3 3 3 3 3 3 3 1376300000 869360000 506890000 8739 471 8145 46378;46379;46380;46381;46382;46383 56094;56095;56096;56097;56098;56099;56100 56095 7 IGCIITAR Unmodified 902.50077 0.50077184 1574 Q12904;Q12904-2 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 yes no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 46.516 46.421 2 0.004793 12627 20211116_3428_TMUAki_TMT10x_P_F1 97.093 51.211 15195000 25483000 52134 27781000 21332000 13862000 12776000 14643000 11126000 13897000 18885000 14148000 23787000 1308800 27971000 20237000 14997000 13356000 14826000 11666000 13604000 17978000 3 3 2 3 3 3 3 3 3 3 3 2492300 3491600 10277 4285800 5009900 5012600 2979500 3110600 3015600 2731800 3359600 2320700 3261000 251470 4327000 4753400 5019000 3129600 3247300 3078400 2683700 3230200 1 1 1 1 1 1 1 1 1 1 1 12703000 21991000 41857 23495000 16322000 8848900 9796500 11532000 8110400 11166000 15526000 11828000 20526000 1057400 23644000 15483000 9978400 10226000 11579000 8587800 10920000 14747000 2 2 1 2 2 2 2 2 2 2 2 682880000 407250000 275640000 8740 1574 8146 46384;46385;46386 56101;56102 56101 2 IGCLLSGGLDSSLVAATLLK Unmodified 1987.1024 0.10236317 554 P08243;P08243-2;P08243-3 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.745 1 2 3 4 2 82.077 82.064 2;3 6.9697E-51 27533 20211116_3431_TMUAki_TMT10x_P_F4 225.32 196.56 15048000 23277000 228330 22657000 25000000 37343000 29661000 16572000 18952000 20347000 23891000 14012000 21718000 999360 23378000 24099000 36669000 29511000 18010000 19925000 19716000 22894000 6 6 4 6 6 6 6 6 6 6 6 10557000 15455000 51423 15082000 16880000 30589000 21500000 11009000 13916000 14620000 16877000 9830000 14420000 411400 15644000 16302000 29765000 21332000 12289000 14594000 14130000 16189000 4 4 2 4 4 4 4 4 4 4 4 4490200 7822300 176900 7575200 8119600 6753600 8160600 5563200 5037000 5727300 7014400 4182100 7298100 587970 7733100 7797200 6904000 8178800 5721300 5331100 5586800 6705300 2 2 2 2 2 2 2 2 2 2 2 3348400000 2092000000 1256400000 8741 554 8147 46387;46388;46389;46390;46391;46392 56103;56104;56105;56106;56107;56108 56106 6 IGDEDVGR Unmodified 859.40356 0.40356022 779 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 0 0 By MS/MS 1 0 1 1 32.172 32.202 2 0.017339 8802 20211116_3439_TMUAki_TMT10x_S_F1 70.856 43.369 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8742 779 8148 46393 56109 56109 1 IGDEDVGRVIFGLFGK Unmodified 1720.9148 0.91482039 779 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 0 1 By MS/MS By MS/MS 4.75 3.27 1 1 2 1 3 80.362 80.346 3 3.8239E-21 25953 20211116_3447_TMUAki_TMT10x_S_F8 166.04 143.5 7257300 12019000 27425 10397000 11996000 9333200 9122800 6745200 5564100 5978400 8661800 6757300 11209000 675860 10705000 11431000 9515500 9293800 6965700 5926200 5870400 8259800 3 3 1 3 3 3 3 3 3 3 3 2490800 3906700 0 3535400 2254400 4452300 2660900 2441200 1890300 2143200 3019600 2319000 3644000 191130 3646600 2171100 4433900 2654000 2574600 1996800 2105400 2877900 1 1 0 1 1 1 1 1 1 1 1 4766500 8112400 27425 6861300 9741800 4881000 6461900 4304000 3673800 3835200 5642200 4438300 7565100 484730 7058400 9259700 5081600 6639800 4391100 3929300 3765000 5381900 2 2 1 2 2 2 2 2 2 2 2 2372700000 566570000 1806200000 8743 779 8149 46394;46395;46396;46397 56110;56111;56112 56112 3 IGDEYFTFITDCKDPK Unmodified 1947.8924 0.89242997 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 1 By MS/MS By MS/MS 6.2 1.22 1 4 4 3 3 8 7 73.466 73.508 3;4 8.6696E-15 25542 20211116_3446_TMUAki_TMT10x_S_F7 141.85 125.9 155210000 276070000 1444600 214810000 197430000 299150000 200930000 252130000 221220000 241010000 227470000 144520000 257370000 14105000 224730000 189440000 298490000 204250000 258390000 224390000 235840000 219240000 22 22 14 22 22 22 22 22 22 22 22 72322000 124440000 590570 96932000 77362000 173410000 95068000 116180000 103310000 111850000 101040000 67340000 116010000 6186500 101970000 74631000 170650000 95761000 120880000 104660000 109420000 97538000 11 11 7 11 11 11 11 11 11 11 11 82891000 151630000 854030 117870000 120070000 125740000 105860000 135960000 117910000 129160000 126430000 77183000 141360000 7918800 122750000 114810000 127840000 108490000 137510000 119730000 126430000 121700000 11 11 7 11 11 11 11 11 11 11 11 16360000000 9093700000 7266100000 8744 1094 8150 46398;46399;46400;46401;46402;46403;46404;46405;46406;46407;46408;46409;46410;46411;46412 56113;56114;56115;56116;56117;56118;56119;56120;56121;56122;56123;56124;56125;56126;56127;56128;56129;56130;56131;56132;56133;56134;56135 56134 23 IGDFGLATVK Unmodified 1019.5651 0.56514624 605 P10398;P04049;P15056;P04049-2 ARAF;RAF1;BRAF Serine/threonine-protein kinase A-Raf;RAF proto-oncogene serine/threonine-protein kinase;Serine/threonine-protein kinase B-raf yes no 0 0 0 0 By MS/MS 7 0 1 1 64.454 65.097 2 0.093811 21473 20211116_3435_TMUAki_TMT10x_P_F7 56.209 21.11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8745 605 8151 46413 56136 56136 1 IGDFGLVTSLK Unmodified 1148.6441 0.64412484 734 P19525;P19525-2 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes no 0 0 0 0 By MS/MS 8 0 1 1 76.464 76.387 2 1.5858E-06 24363 20211116_3447_TMUAki_TMT10x_S_F8 132.32 64.422 3463200 6406300 63561 5792900 4608500 3621100 4134400 3835200 3494900 3892600 4381100 3225100 5975400 362400 5920500 4410800 3827700 4198700 3890300 3614900 3799400 4198900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3463200 6406300 63561 5792900 4608500 3621100 4134400 3835200 3494900 3892600 4381100 3225100 5975400 362400 5920500 4410800 3827700 4198700 3890300 3614900 3799400 4198900 1 1 1 1 1 1 1 1 1 1 1 458250000 0 458250000 8746 734 8152 46414 56137 56137 1 IGDKEGALTAFRK Unmodified 1404.7725 0.77251325 1750 Q15008;Q15008-4;Q15008-3;Q15008-2 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 0 0 0 2 By MS/MS 2 0 1 1 47.675 47.595 4 0.055372 13318 20211116_3440_TMUAki_TMT10x_S_F2 44.436 26.519 949080 1590500 0 1718000 932750 910300 737380 1614800 1757200 1351700 1657600 883590 1484600 66993 1731600 888710 993010 789740 1598400 1739500 1331000 1602100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 949080 1590500 0 1718000 932750 910300 737380 1614800 1757200 1351700 1657600 883590 1484600 66993 1731600 888710 993010 789740 1598400 1739500 1331000 1602100 1 1 0 1 1 1 1 1 1 1 1 93732000 0 93732000 8747 1750 8153 46415 56138 56138 1 IGDLQAFQGHGAGNLAGLK Unmodified 1865.9748 0.97479489 551 P08195;P08195-3;P08195-2;P08195-4 SLC3A2 4F2 cell-surface antigen heavy chain yes no 0 0 0 0 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 62.615 62.74 3 8.1378E-41 19218 20211116_3428_TMUAki_TMT10x_P_F1 199.41 178.11 32929000 56223000 749940 55023000 63624000 104720000 62590000 77645000 80561000 76466000 63534000 30665000 52458000 3806100 56960000 61022000 103010000 64098000 80276000 80567000 74729000 61816000 7 7 4 7 7 7 7 7 7 7 7 24158000 40555000 681290 39360000 52661000 92908000 52319000 56530000 58913000 55318000 45949000 22498000 37837000 2984300 41039000 50523000 90528000 53291000 59275000 59186000 54076000 44727000 5 5 2 5 5 5 5 5 5 5 5 8770900 15669000 68652 15663000 10964000 11816000 10271000 21116000 21648000 21149000 17585000 8167100 14621000 821860 15922000 10499000 12483000 10807000 21001000 21381000 20653000 17090000 2 2 2 2 2 2 2 2 2 2 2 9217600000 5567800000 3649700000 8748 551 8154 46416;46417;46418;46419;46420;46421 56139;56140;56141;56142;56143;56144;56145;56146 56140 8 IGDQEFDHLPALLEFYK Unmodified 2034.0098 0.0098429899 1046 P46109 CRKL Crk-like protein yes yes 0 0 0 0 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 79.102 79.101 3 9.106E-08 26336 20211116_3431_TMUAki_TMT10x_P_F4 109.38 96.401 8299100 13775000 157280 14158000 8794700 11538000 11158000 7148600 7561400 8386500 10366000 7728100 12855000 792940 14378000 8498600 11817000 11083000 7526800 7949300 8139700 9913000 3 3 2 3 3 3 3 3 3 3 3 2961900 4809600 0 4961800 2640400 5085900 3390400 2537800 2885500 3042300 3532600 2757400 4488400 192430 5052900 2547400 5116200 3384100 2723900 2980500 2950500 3387800 1 1 0 1 1 1 1 1 1 1 1 5337200 8965100 157280 9196600 6154400 6452500 7767400 4610800 4676000 5344200 6833600 4970600 8366300 600510 9324700 5951200 6701200 7698700 4802800 4968800 5189200 6525300 2 2 2 2 2 2 2 2 2 2 2 3564800000 1458000000 2106800000 8749 1046 8155 46422;46423;46424;46425;46426 56147;56148;56149 56147 3 IGDQEFDSLPALLEFYK Unmodified 1983.983 0.98295954 1044;1045 P46108;P46108-2 CRK Adapter molecule crk no no 0 0 0 0 By MS/MS By MS/MS 5.4 1.8 2 2 1 2 1 2 4 6 81.647 81.643 3 1.0325E-07 26496 20211116_3444_TMUAki_TMT10x_S_F5 107.75 87.364 33913000 51612000 137920 57891000 34733000 41096000 38262000 24619000 23982000 27361000 37888000 31577000 48183000 2850800 58364000 33394000 42532000 38184000 25945000 25516000 26609000 36119000 14 14 10 14 14 14 14 14 14 14 14 16618000 24658000 55425 28675000 14327000 24042000 16169000 11739000 11683000 13498000 17355000 15473000 23024000 1299400 28901000 13781000 24501000 16166000 12609000 12283000 13111000 16566000 7 7 4 7 7 7 7 7 7 7 7 17295000 26954000 82500 29216000 20406000 17055000 22093000 12880000 12299000 13863000 20533000 16104000 25160000 1551400 29463000 19613000 18030000 22018000 13336000 13233000 13498000 19553000 7 7 6 7 7 7 7 7 7 7 7 4163600000 1473000000 2690600000 8750 1044;1045 8156 46427;46428;46429;46430;46431;46432;46433;46434;46435;46436 56150;56151;56152;56153;56154;56155;56156;56157;56158;56159;56160;56161;56162 56158 13 IGEEFLTDLSQLKK Unmodified 1619.877 0.8770379 620 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 1 By MS/MS By MS/MS 6.25 0.829 1 1 2 3 1 78.329 78.352 3 7.5147E-19 27568 20211116_3446_TMUAki_TMT10x_S_F7 164.15 132.67 40619000 65613000 134140 64072000 32794000 66271000 34212000 37183000 34857000 41340000 39055000 37820000 61218000 3196200 65505000 31476000 66724000 34648000 39397000 35581000 40204000 37545000 4 4 2 4 4 4 4 4 4 4 4 24492000 40043000 134140 38615000 23745000 42162000 24292000 22191000 20985000 24644000 27275000 22805000 37359000 2052000 39547000 22784000 42284000 24509000 23644000 21717000 23967000 26117000 3 3 2 3 3 3 3 3 3 3 3 16127000 25570000 0 25457000 9048500 24110000 9920000 14992000 13871000 16697000 11780000 15015000 23859000 1144200 25958000 8691900 24440000 10139000 15754000 13865000 16237000 11428000 1 1 0 1 1 1 1 1 1 1 1 5181000000 2421600000 2759500000 8751 620 8157 46437;46438;46439;46440 56163;56164;56165;56166 56166 4 IGEEQSAEDAEDGPPELLFIHGGHTAK Unmodified 2846.3359 0.33588117 1854 Q16576;Q16576-2 RBBP7 Histone-binding protein RBBP7 yes no 0 0 0 0 By MS/MS By MS/MS 3.38 1.32 1 1 2 2 2 5 3 58.074 58.008 4 4.8687E-52 20341 20211116_3441_TMUAki_TMT10x_S_F3 207.07 199.19 30835000 53739000 135500 53373000 42130000 59169000 38527000 37695000 36445000 35621000 38495000 28709000 50143000 1914400 54562000 40300000 59438000 39204000 39347000 37241000 34875000 37071000 13 13 6 13 13 13 13 13 13 13 13 24530000 42695000 91395 42394000 34974000 52992000 32356000 29559000 28713000 28240000 29748000 22839000 39837000 1359100 43429000 33461000 52805000 32844000 31197000 29407000 27635000 28665000 9 9 3 9 9 9 9 9 9 9 9 6304900 11044000 44100 10979000 7156500 6176900 6171000 8135300 7732300 7381300 8746500 5870700 10305000 555320 11133000 6838600 6632800 6359400 8150000 7834000 7240000 8406000 4 4 3 4 4 4 4 4 4 4 4 12038000000 8758000000 3280200000 8752 1854 8158 46441;46442;46443;46444;46445;46446;46447;46448 56167;56168;56169;56170;56171;56172;56173;56174;56175;56176;56177;56178;56179 56176 13 IGEEQSPEDAEDGPPELLFIHGGHTAK Unmodified 2872.3515 0.35153123 1553 Q09028;Q09028-3;Q09028-2;Q09028-4 RBBP4 Histone-binding protein RBBP4 yes no 0 0 0 0 By MS/MS By MS/MS 2.78 1.31 4 4 4 4 2 9 9 58.508 58.371 4;5 4.9219E-52 20451 20211116_3441_TMUAki_TMT10x_S_F3 206.94 187.83 168050000 296980000 3894100 290570000 208200000 237820000 185010000 190380000 186930000 179550000 213600000 156500000 277090000 17325000 296090000 199240000 244460000 188940000 195630000 191030000 175800000 205230000 31 31 22 31 31 31 31 31 31 31 31 66676000 109150000 1268200 104320000 77191000 130170000 78290000 75045000 72092000 66660000 80170000 62089000 101830000 6578600 107150000 74101000 129780000 79163000 78832000 73900000 65449000 77087000 13 13 8 13 13 13 13 13 13 13 13 101380000 187840000 2625900 186250000 131010000 107640000 106720000 115330000 114840000 112880000 133430000 94409000 175270000 10746000 188940000 125130000 114680000 109780000 116800000 117130000 110350000 128140000 18 18 14 18 18 18 18 18 18 18 18 80528000000 44200000000 36328000000 8753 1553 8159 46449;46450;46451;46452;46453;46454;46455;46456;46457;46458;46459;46460;46461;46462;46463;46464;46465;46466 56180;56181;56182;56183;56184;56185;56186;56187;56188;56189;56190;56191;56192;56193;56194;56195;56196;56197;56198;56199;56200;56201;56202;56203;56204;56205;56206;56207;56208;56209;56210 56201 31 IGEGTYGVVYK Unmodified 1184.6077 0.60773933 517;797 P06493;P06493-2;P24941;P24941-2;Q00526 CDK1;CDK2;CDK3 Cyclin-dependent kinase 1;Cyclin-dependent kinase 2;Cyclin-dependent kinase 3 no no 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 53.344 53.494 2 1.8231E-17 17282 20211116_3446_TMUAki_TMT10x_S_F7 193.38 91.312 33390000 53598000 279390 65881000 67070000 61376000 43133000 43686000 47534000 35910000 51392000 31090000 50058000 3336900 66274000 63715000 62406000 45140000 45077000 48302000 35392000 49457000 7 7 5 7 7 7 7 7 7 7 7 17928000 28620000 180140 35591000 51421000 48512000 28153000 23592000 25897000 19075000 27316000 16693000 26731000 1959900 36010000 48721000 48064000 29704000 25109000 26495000 18815000 26307000 4 4 2 4 4 4 4 4 4 4 4 15462000 24978000 99254 30289000 15649000 12864000 14980000 20095000 21636000 16836000 24076000 14397000 23327000 1377000 30265000 14994000 14342000 15436000 19969000 21806000 16577000 23150000 3 3 3 3 3 3 3 3 3 3 3 1780600000 816260000 964360000 8754 517;797 8160 46467;46468;46469;46470;46471;46472 56211;56212;56213;56214;56215;56216;56217;56218;56219 56219 9 IGEHMEEHGIK Oxidation (M) 1294.5976 0.59758535 1871 Q16881;Q16881-3;Q16881-4;Q16881-5;Q16881-2;Q16881-6;Q16881-7 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 0 0 1 0 By MS/MS By MS/MS 2.8 0.748 2 2 1 3 2 29.319 29.125 3;4 4.4704E-05 8714 20211116_3441_TMUAki_TMT10x_S_F3 100.09 77.888 843920 1374900 3638.7 1257600 1194700 1219700 1139800 817700 904220 819790 1142600 785740 1282500 70340 1290600 1143800 1235800 1151800 851730 938660 800560 1094900 4 4 2 4 4 4 4 4 4 4 4 391750 622790 970.39 605730 664050 745850 469330 352380 419530 376760 515410 364760 581070 36886 621250 631860 742340 484700 378870 432380 366960 494230 2 2 1 2 2 2 2 2 2 2 2 452170 752130 2668.3 651820 530610 473810 670520 465310 484690 443030 627210 420980 701440 33454 669390 511960 493470 667070 472860 506280 433600 600630 2 2 1 2 2 2 2 2 2 2 2 81053000 37962000 43090000 8755 1871 8161 46473;46474;46475;46476;46477 56220;56221;56222;56223 56222 2483 4 IGEHMEEHGIK Unmodified 1278.6027 0.60267073 1871 Q16881;Q16881-3;Q16881-4;Q16881-5;Q16881-2;Q16881-6;Q16881-7 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 32.735 32.644 4 0.00033936 10082 20211116_3441_TMUAki_TMT10x_S_F3 83.045 59.194 738790 1102800 33500 1222900 1178600 1091200 941110 651990 651290 650160 1035400 688130 1029500 98631 1237100 1126100 1109900 958060 685010 688890 635060 986930 2 2 2 2 2 2 2 2 2 2 2 494120 727450 32595 813730 885520 873250 629020 452550 442820 422640 688120 460320 679110 76825 824940 844600 876480 645690 480460 467340 414000 656210 1 1 1 1 1 1 1 1 1 1 1 244670 375360 905.02 409200 293070 217910 312090 199440 208470 227530 347280 227810 350380 21806 412200 281540 233380 312360 204550 221540 221060 330710 1 1 1 1 1 1 1 1 1 1 1 82553000 68451000 14103000 8756 1871 8161 46478;46479;46480 56224;56225 56225 2 IGEHTPSALAIMENANVLAR Unmodified 2106.0892 0.089172718 482 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 By MS/MS By MS/MS 5.33 2.4 2 2 2 2 2 4 4 9 9 67.947 68.026 2;3 9.8072E-118 21476 20211116_3436_TMUAki_TMT10x_P_F8 357.88 322.2 85617000 146800000 1258000 138540000 98017000 113300000 100660000 80177000 72542000 80691000 103460000 79722000 136950000 7394000 141540000 94085000 116230000 101090000 83205000 76126000 78786000 98849000 29 29 17 29 29 29 29 29 29 29 29 38661000 63519000 507430 60361000 37180000 63734000 44090000 34415000 30622000 35204000 44965000 36000000 59258000 3119000 61852000 35847000 64061000 43945000 36494000 32251000 34350000 42932000 13 13 8 13 13 13 13 13 13 13 13 46955000 83280000 750550 78174000 60837000 49563000 56567000 45762000 41919000 45486000 58497000 43721000 77690000 4275000 79683000 58238000 52171000 57148000 46711000 43875000 44436000 55917000 16 16 9 16 16 16 16 16 16 16 16 53378000000 27752000000 25626000000 8757 482 8162 46481;46482;46483;46484;46485;46486;46487;46488;46489;46490;46491;46492;46493;46494;46495;46496;46497;46498 56226;56227;56228;56229;56230;56231;56232;56233;56234;56235;56236;56237;56238;56239;56240;56241;56242;56243;56244;56245;56246;56247;56248;56249;56250;56251;56252;56253;56254;56255;56256 56238 31 IGEHTPSALAIMENANVLAR Oxidation (M) 2122.0841 0.084087341 482 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 1 0 By MS/MS By MS/MS 5.5 1.5 2 2 4 4 2 2 8 8 53.038 53.186 2;3 1.4062E-31 14640 20211116_3434_TMUAki_TMT10x_P_F6 185.57 151.61 78318000 137200000 3603800 139310000 103350000 153460000 90712000 110670000 115040000 107250000 114600000 72948000 128030000 9891500 142180000 98993000 154500000 93428000 114580000 115960000 104890000 110570000 26 26 17 26 26 26 26 26 26 26 26 43039000 76355000 1671500 76765000 65456000 117100000 58746000 65312000 67530000 63017000 64366000 40085000 71249000 5157200 78887000 62689000 115640000 60211000 68949000 68203000 61640000 62189000 14 14 8 14 14 14 14 14 14 14 14 35280000 60846000 1932400 62548000 37898000 36361000 31967000 45361000 47514000 44234000 50236000 32863000 56782000 4734300 63298000 36304000 38860000 33217000 45632000 47754000 43248000 48377000 12 12 9 12 12 12 12 12 12 12 12 40674000000 21148000000 19526000000 8758 482 8162 46499;46500;46501;46502;46503;46504;46505;46506;46507;46508;46509;46510;46511;46512;46513;46514 56257;56258;56259;56260;56261;56262;56263;56264;56265;56266;56267;56268;56269;56270;56271;56272;56273;56274;56275;56276;56277;56278;56279;56280;56281;56282;56283;56284 56267 375 28 IGEMPLTDSILCDGLTDAFHNCHMGITAENVAK 2 Oxidation (M) 3661.6521 0.6520884 2706 Q9BWD1;Q9BWD1-2 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes no 0 0 2 0 By MS/MS By MS/MS 4.4 1.02 1 2 1 1 2 3 75.33 75.275 4 2.9103E-07 25196 20211116_3442_TMUAki_TMT10x_S_F4 79.458 69.036 6231700 9849500 26981 8114900 6624300 13060000 7185600 10002000 9875700 10850000 8878700 5801900 9184100 464380 8475000 6362000 12931000 7342600 10349000 9893700 10561000 8595800 5 5 1 5 5 5 5 5 5 5 5 4251100 6402400 0 5214200 3595400 9377600 4225600 6343000 6206800 7041100 5621700 3957700 5969700 276150 5465500 3458900 9228300 4314600 6623200 6206900 6847900 5441200 3 3 0 3 3 3 3 3 3 3 3 1980600 3447100 26981 2900800 3028900 3682100 2960000 3659200 3668900 3808600 3256900 1844200 3214400 188230 3009500 2903200 3702400 3028000 3726000 3686800 3713500 3154600 2 2 1 2 2 2 2 2 2 2 2 2851100000 1395100000 1456000000 8759 2706 8163 46515;46516;46517;46518;46519 56285;56286;56287;56288;56289 56288 2904;2905 5 IGFFNQQYAEQLR Unmodified 1612.7998 0.79979063 2241 Q8NE71;Q8NE71-2 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 66.769 66.726 2 9.741E-36 22903 20211116_3439_TMUAki_TMT10x_S_F1 261.87 236.31 18045000 31681000 64124 28971000 22274000 27148000 20796000 20773000 19187000 20141000 23272000 16802000 29552000 1520600 29720000 21318000 27626000 21122000 21423000 19735000 19697000 22323000 7 7 4 7 7 7 7 7 7 7 7 8305800 13853000 0 12988000 9728200 17178000 10451000 9343500 9042600 9116500 10478000 7732700 12923000 614030 13374000 9339900 17065000 10520000 9888400 9311900 8913000 10063000 3 3 0 3 3 3 3 3 3 3 3 9739500 17828000 64124 15984000 12546000 9970100 10345000 11429000 10145000 11025000 12794000 9068900 16629000 906540 16346000 11978000 10561000 10602000 11535000 10423000 10784000 12260000 4 4 4 4 4 4 4 4 4 4 4 2824400000 1759900000 1064400000 8760 2241 8164 46520;46521;46522;46523 56290;56291;56292;56293;56294;56295;56296 56293 7 IGFFQGDIR Unmodified 1051.5451 0.5450795 905 P33121;P33121-2;P33121-3 ACSL1 Long-chain-fatty-acid--CoA ligase 1 yes no 0 0 0 0 By MS/MS 8 0 1 1 61.389 61.577 2 0.0050944 18803 20211116_3436_TMUAki_TMT10x_P_F8 74.184 41.714 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8761 905 8165 46524 56297 56297 1 IGFPEFIR Unmodified 977.53345 0.53345218 3377 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 4 2 2 71.567 71.503 2 0.023919 24836 20211116_3439_TMUAki_TMT10x_S_F1 68.312 17.414 + 31878000 48757000 86877 45367000 28755000 43709000 30203000 27618000 25425000 29083000 35083000 29680000 45483000 2384700 46496000 27594000 44269000 30412000 28936000 26417000 28344000 33544000 6 6 2 6 6 6 6 6 6 6 6 20364000 30508000 86877 29498000 16616000 31640000 16063000 17594000 16232000 18567000 22266000 18961000 28463000 1657100 30196000 15920000 31785000 16328000 18626000 16720000 18093000 21292000 4 4 2 4 4 4 4 4 4 4 4 11515000 18249000 0 15869000 12139000 12070000 14139000 10024000 9192400 10517000 12817000 10719000 17020000 727650 16300000 11674000 12484000 14084000 10310000 9696800 10251000 12252000 2 2 0 2 2 2 2 2 2 2 2 2293800000 1136200000 1157600000 8762 3377 8166 46525;46526;46527;46528 56298;56299;56300 56300 3 IGFPETTEEELEEIASENSDCIFPSAPDVKA Unmodified 3423.5552 0.55517758 3284 Q9Y3F4;Q9Y3F4-2 STRAP Serine-threonine kinase receptor-associated protein yes no 0 0 0 1 By MS/MS By MS/MS 1.3 0.458 7 3 4 6 82.691 82.684 3;4 1.2185E-35 28619 20211116_3439_TMUAki_TMT10x_S_F1 173.35 167.45 27394000 42382000 140990 42685000 28162000 37059000 30289000 22524000 22024000 23529000 31872000 25505000 39548000 1889100 43440000 27044000 37774000 30356000 23665000 23116000 22938000 30441000 16 16 7 16 16 16 16 16 16 16 16 18681000 28390000 36320 28431000 15726000 28329000 18604000 15233000 15259000 16674000 21467000 17392000 26491000 1232100 28999000 15133000 28572000 18617000 16192000 15890000 16225000 20516000 8 8 2 8 8 8 8 8 8 8 8 8712900 13992000 104670 14254000 12436000 8730300 11685000 7291100 6764600 6854800 10405000 8113200 13057000 656950 14440000 11911000 9202300 11739000 7472600 7226300 6712700 9924700 8 8 5 8 8 8 8 8 8 8 8 24380000000 13982000000 10398000000 8763 3284 8167 46529;46530;46531;46532;46533;46534;46535;46536;46537;46538 56301;56302;56303;56304;56305;56306;56307;56308;56309;56310;56311;56312;56313;56314;56315;56316;56317 56309 17 IGFPWSEIR Unmodified 1103.5764 0.57637963 682;926 P15311;P26038;P35241-4;P35241;P35241-5 EZR;MSN;RDX Ezrin;Moesin;Radixin no no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 72.318 72.202 2 1.9889E-06 23351 20211116_3440_TMUAki_TMT10x_S_F2 193.86 117.83 22000000 35148000 0 34267000 25273000 26625000 26897000 12525000 11065000 14876000 23143000 20482000 32793000 1627600 34906000 24258000 27278000 26708000 13517000 12378000 14431000 21952000 5 5 0 5 5 5 5 5 5 5 5 12751000 19292000 0 19069000 13960000 19149000 16591000 7048400 6453900 8579400 13065000 11871000 18001000 880290 19470000 13439000 19231000 16378000 7822800 7244000 8316000 12399000 3 3 0 3 3 3 3 3 3 3 3 9249100 15855000 0 15198000 11313000 7475900 10306000 5477100 4610900 6296100 10079000 8611400 14792000 747350 15436000 10819000 8047400 10330000 5694100 5134000 6115400 9553200 2 2 0 2 2 2 2 2 2 2 2 2930300000 1314100000 1616200000 8764 682;926 8168 46539;46540;46541;46542 56318;56319;56320;56321;56322 56322 5 IGFVGFPSVGK Unmodified 1106.6124 0.61243078 3234 Q9Y295 DRG1 Developmentally-regulated GTP-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.25 0.829 2 2 4 5 3 73.007 72.911 2;3 1.5826E-11 25504 20211116_3430_TMUAki_TMT10x_P_F3 138.66 99.641 39788000 66107000 301710 62255000 44908000 54221000 43843000 45325000 43604000 44728000 51939000 37048000 61670000 3523700 63663000 43043000 55533000 44520000 46514000 44665000 43709000 49845000 8 8 3 8 8 8 8 8 8 8 8 13748000 22000000 10254 21077000 16320000 24664000 15454000 12725000 11825000 12956000 16233000 12800000 20524000 1129000 21621000 15624000 24636000 15609000 13547000 12345000 12644000 15523000 2 2 1 2 2 2 2 2 2 2 2 26041000 44107000 291460 41179000 28588000 29557000 28389000 32600000 31779000 31772000 35706000 24248000 41146000 2394700 42042000 27419000 30896000 28912000 32967000 32320000 31065000 34323000 6 6 2 6 6 6 6 6 6 6 6 3956100000 1700700000 2255400000 8765 3234 8169 46543;46544;46545;46546;46547;46548;46549;46550 56323;56324;56325;56326;56327;56328;56329;56330;56331;56332;56333 56325 11 IGGDAATTVNNSTPDFGFGGQK Unmodified 2153.0025 0.0025257806 2380 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 6.12 0.599 1 5 2 4 4 63.143 63.299 2;3;4 5.0184E-83 19301 20211116_3445_TMUAki_TMT10x_S_F6 287.96 267.37 44447000 80428000 545900 78808000 52851000 66781000 48645000 55491000 57135000 54323000 61418000 41387000 75042000 4177900 80332000 50594000 68521000 49826000 56954000 57906000 53103000 59115000 17 17 11 17 17 17 17 17 17 17 17 18317000 32065000 430490 30106000 25882000 43195000 27192000 23443000 23518000 22809000 25315000 17058000 29913000 2020100 31048000 24876000 42753000 27400000 24813000 24150000 22303000 24365000 8 8 7 8 8 8 8 8 8 8 8 26130000 48363000 115410 48701000 26968000 23586000 21453000 32048000 33617000 31514000 36103000 24329000 45129000 2157800 49284000 25719000 25767000 22426000 32141000 33755000 30801000 34750000 9 9 4 9 9 9 9 9 9 9 9 7454600000 4705200000 2749400000 8766 2380 8170 46551;46552;46553;46554;46555;46556;46557;46558 56334;56335;56336;56337;56338;56339;56340;56341;56342;56343;56344;56345;56346;56347;56348;56349;56350 56347 17 IGGDAGTSLNSNDYGYGGQK Unmodified 1972.8763 0.87626263 2408;2407 Q96AE4-2;Q96AE4 FUBP1 Far upstream element-binding protein 1 no no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 50.172 50.351 3 4.097E-32 14776 20211116_3433_TMUAki_TMT10x_P_F5 183.74 164.9 3261300 4690500 55897 9059700 10614000 7457800 4748400 5154800 7665800 3881000 6012400 3037000 4393100 418350 8909800 10033000 7644600 5213600 5319200 7612300 3842900 5851100 3 3 2 3 3 3 3 3 3 3 3 2110900 2989600 39012 5171300 9818300 6885200 3896700 3116900 4329900 2491900 3462000 1965700 2797800 312200 5147100 9267300 6823800 4275700 3340600 4355200 2459400 3366500 2 2 1 2 2 2 2 2 2 2 2 1150400 1700900 16885 3888400 796000 572670 851710 2037900 3335800 1389100 2550300 1071200 1595300 106150 3762700 765670 820850 937910 1978600 3257100 1383400 2484500 1 1 1 1 1 1 1 1 1 1 1 1415200000 1132300000 282910000 8767 2408;2407 8171 46559;46560;46561 56351;56352;56353 56352 3 IGGGDTTEHIQTHFESK Unmodified 1855.8701 0.87005504 111 O14497;O14497-3;O14497-2 ARID1A AT-rich interactive domain-containing protein 1A yes no 0 0 0 0 By MS/MS 5 0 1 1 37.666 37.813 4 1.9959E-05 8643 20211116_3444_TMUAki_TMT10x_S_F5 88.385 76.409 1476300 2338500 26975 2740400 1100500 924020 1055200 3572100 3683200 2012500 2960200 1374800 2183600 142270 2740100 1055800 1112900 1154100 3451600 3606400 2029800 2878000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1476300 2338500 26975 2740400 1100500 924020 1055200 3572100 3683200 2012500 2960200 1374800 2183600 142270 2740100 1055800 1112900 1154100 3451600 3606400 2029800 2878000 1 1 1 1 1 1 1 1 1 1 1 66967000 0 66967000 8768 111 8172 46562 56354 56354 1 IGGGIDVPVPR Unmodified 1078.6135 0.61349341 2380 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.29 1.03 2 2 2 1 3 4 53.74 53.889 2 9.9558E-07 14987 20211116_3434_TMUAki_TMT10x_P_F6 135.71 108.75 27257000 43408000 43348 48427000 38878000 42834000 30806000 32610000 33753000 30493000 36353000 25379000 40523000 2365200 48965000 37072000 43752000 31761000 33609000 34301000 29868000 34988000 5 5 1 5 5 5 5 5 5 5 5 16411000 24977000 0 27845000 28651000 33462000 20556000 19352000 20429000 18213000 21970000 15280000 23317000 1448100 28288000 27263000 33425000 21270000 20354000 20843000 17835000 21146000 3 3 0 3 3 3 3 3 3 3 3 10846000 18432000 43348 20581000 10228000 9372400 10249000 13259000 13324000 12280000 14383000 10099000 17207000 917120 20677000 9808900 10327000 10490000 13255000 13458000 12034000 13842000 2 2 1 2 2 2 2 2 2 2 2 4966200000 2657700000 2308400000 8769 2380 8173 46563;46564;46565;46566;46567;46568;46569 56355;56356;56357;56358;56359;56360;56361 56357 7 IGGGIGFGGLEAMNSMGGFGGVGR 2 Oxidation (M) 2229.0307 0.030671561 3065 Q9P2K5;Q9P2K5-2 MYEF2 Myelin expression factor 2 yes no 0 0 2 0 By MS/MS By MS/MS 1 0 2 1 1 70.145 70.06 3 8.7713E-08 24230 20211116_3439_TMUAki_TMT10x_S_F1 93.92 84.756 12658000 19676000 239860 20679000 13305000 15915000 13523000 10302000 11109000 11182000 14152000 11788000 18364000 1270500 20954000 12777000 16381000 13631000 10784000 11515000 10884000 13557000 4 4 3 4 4 4 4 4 4 4 4 8498600 12570000 172600 14259000 7330800 11649000 8098700 6061900 6692800 6814500 8807500 7914200 11735000 837520 14388000 7058200 11903000 8131200 6467800 6945300 6624400 8430800 2 2 1 2 2 2 2 2 2 2 2 4159400 7106600 67269 6419700 5974000 4265800 5424800 4239600 4416600 4367200 5344200 3873300 6628600 432950 6565500 5718400 4478000 5500100 4315700 4570200 4260000 5126700 2 2 2 2 2 2 2 2 2 2 2 1192100000 658880000 533190000 8770 3065 8174 46570;46571 56362;56363;56364;56365 56364 3114;3115 4 IGGIFAFK Unmodified 851.49052 0.49052473 768 P22307;P22307-6;P22307-2;P22307-4;P22307-7;P22307-8 SCP2 Non-specific lipid-transfer protein yes no 0 0 0 0 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 73.152 73.018 2 0.00084327 26592 20211116_3441_TMUAki_TMT10x_S_F3 132.94 78.533 21168000 34576000 161320 31461000 26353000 29801000 25567000 27878000 27829000 27470000 27952000 19710000 32251000 1977900 32291000 25258000 30419000 26044000 28430000 28216000 26845000 26960000 3 3 3 3 3 3 3 3 3 3 3 7919700 12782000 75012 11395000 8668500 12879000 8914000 9573900 10380000 9843400 10403000 7374600 11922000 736990 11745000 8322500 12954000 9074400 9909000 10496000 9602500 10034000 1 1 1 1 1 1 1 1 1 1 1 13248000 21793000 86304 20066000 17684000 16922000 16653000 18304000 17449000 17626000 17549000 12336000 20329000 1240900 20546000 16936000 17464000 16970000 18521000 17720000 17243000 16926000 2 2 2 2 2 2 2 2 2 2 2 1938800000 703040000 1235800000 8771 768 8175 46572;46573;46574;46575;46576 56366;56367;56368;56369;56370 56368 5 IGGIGTVPVGR Unmodified 1024.6029 0.60292873 1416;1520 P68104;Q5VTE0;Q05639 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2 no no 0 0 0 0 By MS/MS By MS/MS 3.48 2.46 8 3 2 2 2 2 2 2 11 12 47.546 47.589 2;3 8.2213E-16 13096 20211116_3436_TMUAki_TMT10x_P_F8 207.29 161.61 351950000 560980000 1693500 561760000 430390000 444880000 316680000 385790000 417120000 362820000 433350000 327650000 523460000 24246000 570890000 409420000 459090000 329940000 394060000 420280000 355300000 417530000 28 28 10 27 28 28 27 27 27 28 28 143680000 218260000 839620 224680000 249940000 282160000 141140000 153460000 169120000 144900000 172520000 133770000 203690000 11711000 229230000 236800000 281010000 149370000 161780000 170700000 141870000 166320000 13 13 4 12 13 13 12 12 12 13 13 208270000 342720000 853930 337080000 180450000 162720000 175550000 232330000 248000000 217930000 260830000 193880000 319770000 12535000 341670000 172620000 178090000 180560000 232280000 249580000 213430000 251220000 15 15 6 15 15 15 15 15 15 15 15 211440000000 115070000000 96365000000 8772 1416;1520 8176 46577;46578;46579;46580;46581;46582;46583;46584;46585;46586;46587;46588;46589;46590;46591;46592;46593;46594;46595;46596;46597;46598;46599 56371;56372;56373;56374;56375;56376;56377;56378;56379;56380;56381;56382;56383;56384;56385;56386;56387;56388;56389;56390;56391;56392;56393;56394;56395;56396;56397;56398;56399;56400;56401;56402;56403 56385 33 IGGNEGIDVPIPR Unmodified 1335.7147 0.71466402 2408;2407 Q96AE4-2;Q96AE4 FUBP1 Far upstream element-binding protein 1 no no 0 0 0 0 By MS/MS By MS/MS 3.82 0.936 1 3 4 3 6 5 57.899 57.867 2;3 3.9194E-25 20338 20211116_3441_TMUAki_TMT10x_S_F3 224.09 197.05 53111000 90382000 288080 98331000 74663000 87202000 57258000 76556000 75799000 70960000 80845000 49449000 84366000 4369100 99586000 71131000 89283000 59563000 78207000 76480000 69534000 77832000 14 14 7 14 14 14 14 14 14 14 14 25352000 41592000 180580 47782000 45451000 62598000 35184000 36576000 34628000 34733000 39121000 23603000 38833000 2171900 48530000 43308000 62272000 36208000 38446000 35412000 33998000 37600000 7 7 4 7 7 7 7 7 7 7 7 27759000 48790000 107500 50550000 29212000 24604000 22074000 39981000 41170000 36227000 41724000 25845000 45533000 2197200 51057000 27822000 27010000 23355000 39761000 41068000 35536000 40232000 7 7 3 7 7 7 7 7 7 7 7 13810000000 7347000000 6463200000 8773 2408;2407 8177 46600;46601;46602;46603;46604;46605;46606;46607;46608;46609;46610 56404;56405;56406;56407;56408;56409;56410;56411;56412;56413;56414;56415;56416;56417;56418 56412 15 IGGVQQDTILAEGLHFR Unmodified 1852.9795 0.97954591 2593 Q99623;Q99623-2 PHB2 Prohibitin-2 yes no 0 0 0 0 By MS/MS By MS/MS 5.71 1.58 1 2 2 2 4 10 10 11 48.99 49.003 2;3 4.8145E-108 20028 20211116_3445_TMUAki_TMT10x_S_F6 365.6 323.41 74199000 124330000 853650 120140000 87659000 108160000 89625000 81492000 73558000 79278000 92364000 69091000 115990000 5845600 122680000 84132000 110330000 90310000 84135000 76203000 77518000 88518000 26 26 13 26 26 26 26 26 26 26 26 35611000 58499000 566540 57169000 40015000 68421000 43955000 39414000 36248000 37880000 44390000 33160000 54581000 2962500 58584000 38491000 68357000 44140000 41491000 37502000 37059000 42570000 13 13 7 13 13 13 13 13 13 13 13 38589000 65828000 287110 62973000 47644000 39740000 45670000 42078000 37310000 41398000 47974000 35931000 61414000 2883100 64097000 45641000 41970000 46170000 42644000 38701000 40460000 45949000 13 13 6 13 13 13 13 13 13 13 13 48067000000 23720000000 24346000000 8774 2593 8178 46611;46612;46613;46614;46615;46616;46617;46618;46619;46620;46621;46622;46623;46624;46625;46626;46627;46628;46629;46630;46631 56419;56420;56421;56422;56423;56424;56425;56426;56427;56428;56429;56430;56431;56432;56433;56434;56435;56436;56437;56438;56439;56440;56441;56442;56443;56444;56445;56446 56441 28 IGHPAPNFK Unmodified 979.52395 0.52395013 1533 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 5 3 4 2 2 4 7 5 29.593 29.676 2;3 3.244E-05 8041 20211116_3428_TMUAki_TMT10x_P_F1 128.57 100.17 55300000 88312000 295050 89008000 82833000 83292000 63618000 62109000 64586000 60385000 75586000 51491000 82407000 5090700 90668000 78949000 84729000 65565000 64166000 66053000 59046000 72574000 11 11 5 11 11 11 11 11 11 11 11 31728000 47816000 100930 49396000 56925000 60535000 36874000 36067000 36949000 34529000 43349000 29542000 44624000 2989500 50447000 54079000 60432000 38454000 37860000 37813000 33786000 41619000 6 6 3 6 6 6 6 6 6 6 6 23572000 40496000 194120 39611000 25908000 22756000 26744000 26042000 27637000 25856000 32237000 21949000 37783000 2101200 40220000 24870000 24296000 27111000 26306000 28240000 25260000 30955000 5 5 2 5 5 5 5 5 5 5 5 14201000000 6605900000 7594800000 8775 1533 8179 46632;46633;46634;46635;46636;46637;46638;46639;46640;46641;46642;46643 56447;56448;56449;56450;56451;56452;56453;56454;56455;56456;56457;56458;56459 56448 13 IGHYILGDTLGVGTFGK Unmodified 1746.9305 0.93047046 1597 Q13131;Q13131-2 PRKAA1 5'-AMP-activated protein kinase catalytic subunit alpha-1 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 72.161 71.992 3 2.0792E-15 23245 20211116_3440_TMUAki_TMT10x_S_F2 144.29 123.56 5122300 8455500 123460 8212100 5955200 7553400 6868300 5528000 5277100 5624000 6346300 4770300 7889000 551400 8385000 5740600 7690000 6869800 5725600 5476100 5488700 6089000 2 2 2 2 2 2 2 2 2 2 2 2235600 3505900 54324 3022100 2034600 4071500 2858700 2321900 2039900 2342600 2564700 2082000 3269600 233160 3132900 1974900 4043700 2831200 2449700 2129700 2287000 2457900 1 1 1 1 1 1 1 1 1 1 1 2886700 4949500 69136 5190000 3920600 3481900 4009700 3206100 3237200 3281400 3781600 2688300 4619300 318240 5252100 3765700 3646300 4038600 3275900 3346400 3201700 3631100 1 1 1 1 1 1 1 1 1 1 1 1499400000 1099800000 399620000 8776 1597 8180 46644;46645 56460;56461 56461 2 IGHYVLGDTLGVGTFGK Unmodified 1732.9148 0.91482039 1222 P54646 PRKAA2 5'-AMP-activated protein kinase catalytic subunit alpha-2 yes yes 0 0 0 0 By MS/MS 1 0 1 1 68.031 68.031 3 8.8356E-05 21381 20211116_3428_TMUAki_TMT10x_P_F1 79.022 64.331 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8777 1222 8181 46646 56462 56462 1 IGIEIIK Unmodified 784.50584 0.50584045 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5.71 1.03 1 2 2 2 4 3 61.133 61.386 2 0.0032129 20409 20211116_3446_TMUAki_TMT10x_S_F7 119.57 22.495 66650000 95927000 478310 115170000 80833000 80132000 65481000 54935000 56311000 59574000 75104000 62059000 89582000 5976800 115610000 77137000 83228000 66939000 57265000 58355000 57992000 71869000 6 6 5 6 6 6 6 6 6 6 6 36125000 52578000 477600 60589000 53299000 57254000 35280000 30634000 31117000 33373000 40671000 33640000 49091000 3680700 61195000 50682000 57934000 36599000 32572000 32178000 32481000 38938000 4 4 4 4 4 4 4 4 4 4 4 30525000 43349000 709.18 54583000 27534000 22878000 30201000 24301000 25193000 26201000 34433000 28420000 40491000 2296100 54417000 26455000 25294000 30340000 24693000 26177000 25511000 32930000 2 2 1 2 2 2 2 2 2 2 2 4431800000 2304900000 2126800000 8778 613 8182 46647;46648;46649;46650;46651;46652;46653 56463;56464;56465;56466;56467;56468;56469 56469 7 IGIEIIKR Unmodified 940.60695 0.60695147 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 2.31 1 1 1 2 1 2 1 4 5 49.376 49.509 2;3 0.00056279 14562 20211116_3442_TMUAki_TMT10x_S_F4 147.19 16.123 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8779 613 8183 46654;46655;46656;46657;46658;46659;46660;46661;46662 56470;56471;56472;56473;56474;56475;56476;56477;56478 56476 9 IGIFGQDEDVTSK Unmodified 1407.6882 0.6881745 697 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 0 0 By MS/MS 4 0 1 1 63.051 62.903 2 1.2322E-12 20157 20211116_3442_TMUAki_TMT10x_S_F4 140.14 114.02 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8780 697 8184 46663 56479 56479 1 IGIIDGEYVVNPTRK Unmodified 1672.9148 0.91482039 2272 Q8TCS8 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 7.75 0.433 1 3 3 1 58.245 58.545 3 4.1481E-14 17593 20211116_3436_TMUAki_TMT10x_P_F8 145.52 115.98 31017000 48929000 357070 56277000 41323000 52463000 39438000 29930000 27824000 28383000 36813000 28882000 45683000 3048600 56836000 39597000 53175000 39743000 31521000 29134000 27784000 35234000 5 5 5 5 5 5 5 5 5 5 5 25558000 40213000 271250 46287000 35953000 48145000 34682000 24912000 23065000 23887000 29842000 23799000 37545000 2517300 46819000 34458000 48411000 34887000 26471000 24213000 23371000 28578000 4 4 4 4 4 4 4 4 4 4 4 5458500 8716200 85828 9989800 5370000 4317700 4755700 5017700 4759400 4496400 6971100 5083100 8137900 531300 10016000 5138800 4764200 4856100 5050700 4920200 4412900 6656300 1 1 1 1 1 1 1 1 1 1 1 2173100000 1324900000 848180000 8781 2272 8185 46664;46665;46666;46667 56480;56481;56482;56483;56484;56485 56483 6 IGILHENFQTLK Unmodified 1411.7823 0.78234966 3350 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 2 1 57.61 57.598 3 3.8231E-08 17139 20211116_3436_TMUAki_TMT10x_P_F8 116.74 93.858 10204000 18078000 84989 18643000 16512000 24999000 14960000 14819000 13727000 14035000 13914000 9501100 16871000 983850 19074000 15796000 24847000 15217000 15557000 14025000 13739000 13416000 3 3 2 3 3 3 3 3 3 3 3 8867700 15856000 57922 16241000 15105000 23675000 13696000 12983000 11994000 12290000 12054000 8256900 14797000 846870 16652000 14450000 23419000 13913000 13719000 12278000 12032000 11626000 2 2 1 2 2 2 2 2 2 2 2 1336100 2222000 27067 2402000 1406600 1324300 1264200 1835800 1733200 1744300 1859600 1244300 2074000 136990 2421600 1346800 1427100 1304300 1837900 1747200 1707400 1790000 1 1 1 1 1 1 1 1 1 1 1 1276500000 814790000 461720000 8782 3350 8186 46668;46669;46670 56486;56487;56488;56489 56488 4 IGITNHDEYSLVR Unmodified 1515.7682 0.76815616 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 45.259 45.395 3 1.3521E-25 11680 20211116_3444_TMUAki_TMT10x_S_F5 225.13 201.28 9135400 15450000 210760 17277000 16526000 20088000 11605000 12917000 12936000 11913000 13432000 8507500 14424000 1057300 17539000 15735000 20129000 12070000 13465000 13119000 11676000 12942000 5 5 5 5 5 5 5 5 5 5 5 7490300 12535000 183020 14007000 15091000 18734000 10275000 10501000 10646000 9911900 11013000 6975600 11702000 898030 14256000 14360000 18608000 10686000 11075000 10827000 9704800 10613000 4 4 4 4 4 4 4 4 4 4 4 1645100 2915200 27740 3270400 1434500 1354000 1329900 2415700 2289800 2000900 2419100 1532000 2721500 159290 3282600 1374500 1521500 1384200 2390200 2292100 1971300 2329600 1 1 1 1 1 1 1 1 1 1 1 1779800000 1237500000 542290000 8783 3293 8187 46671;46672;46673;46674;46675 56490;56491;56492;56493;56494;56495;56496 56496 7 IGIVGLPNVGK Unmodified 1065.6546 0.65462995 2947 Q9NTK5;Q9NTK5-3 OLA1 Obg-like ATPase 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.57 0.495 3 4 4 3 67.304 66.966 2;3 9.3589E-16 23007 20211116_3430_TMUAki_TMT10x_P_F3 205.7 185.14 40347000 65634000 225750 68526000 52477000 62602000 43796000 51370000 50933000 47221000 54432000 37568000 61254000 3537500 69615000 50101000 63887000 45099000 52673000 51627000 46290000 52400000 8 8 4 8 8 8 8 8 8 8 8 19994000 30718000 186270 32386000 31297000 43464000 25001000 25253000 24731000 22913000 26091000 18617000 28669000 1929200 33087000 29858000 43185000 25681000 26524000 25219000 22474000 25127000 4 4 2 4 4 4 4 4 4 4 4 20354000 34916000 39478 36139000 21180000 19138000 18795000 26118000 26202000 24308000 28341000 18951000 32585000 1608200 36528000 20243000 20702000 19419000 26148000 26408000 23815000 27273000 4 4 2 4 4 4 4 4 4 4 4 5254100000 3133000000 2121000000 8784 2947 8188 46676;46677;46678;46679;46680;46681;46682 56497;56498;56499;56500;56501;56502;56503;56504;56505 56500 9 IGKPAPDFK Unmodified 971.54402 0.54401687 899 P32119;P32119-2 PRDX2 Peroxiredoxin-2 yes no 0 0 0 1 By MS/MS By MS/MS 5.5 2.69 2 2 2 2 4 4 42.59 42.753 3 0.0010314 13095 20211116_3439_TMUAki_TMT10x_S_F1 91.549 55.59 28295000 44673000 285610 43471000 44110000 42373000 35099000 29460000 31652000 27224000 35688000 26347000 41680000 2783600 44416000 42082000 42945000 35967000 30538000 32494000 26681000 34302000 9 9 7 9 9 9 9 9 9 9 9 17414000 26533000 126360 25811000 31846000 32095000 21541000 17813000 19372000 16554000 21303000 16214000 24755000 1713700 26477000 30281000 31987000 22322000 18794000 19872000 16219000 20490000 4 4 2 4 4 4 4 4 4 4 4 10881000 18140000 159250 17660000 12264000 10279000 13557000 11647000 12280000 10671000 14385000 10133000 16925000 1069900 17939000 11802000 10957000 13645000 11744000 12623000 10462000 13811000 5 5 5 5 5 5 5 5 5 5 5 4569300000 2622200000 1947100000 8785 899 8189 46683;46684;46685;46686;46687;46688;46689;46690 56506;56507;56508;56509;56510;56511;56512;56513;56514 56510 9 IGKPHTVPCK Unmodified 1135.6172 0.61719858 687 P15880 RPS2 40S ribosomal protein S2 yes yes 0 0 0 1 By MS/MS By MS/MS 1.8 0.748 2 2 1 3 2 32.292 32.159 3;4 0.0004795 8346 20211116_3429_TMUAki_TMT10x_P_F2 97.813 61.854 3964800 6525500 48876 5705700 5098200 5305700 4304900 2897700 3256700 3112300 4513200 3691700 6085900 363050 5872700 4869600 5375700 4375700 3074100 3403600 3030800 4314800 5 5 2 5 5 5 5 5 5 5 5 2415400 3906900 17189 3328700 3577600 4125600 2693100 1610700 1843700 1766900 2677500 2249000 3643400 220420 3448600 3408400 4097200 2751700 1769200 1942400 1719200 2557100 3 3 1 3 3 3 3 3 3 3 3 1549300 2618600 31687 2377000 1520500 1180100 1611800 1287000 1413000 1345400 1835700 1442700 2442500 142620 2424100 1461200 1278400 1624000 1304900 1461200 1311600 1757700 2 2 1 2 2 2 2 2 2 2 2 821380000 638740000 182630000 8786 687 8190 46691;46692;46693;46694;46695 56515;56516;56517;56518;56519 56516 5 IGLADYALESGGASVISTR Unmodified 1878.9687 0.96870646 3112 Q9UH99;Q9UH99-2;Q9UH99-3 SUN2 SUN domain-containing protein 2 yes no 0 0 0 0 By MS/MS 6 0 1 1 73.625 73.551 3 0.0064727 23497 20211116_3445_TMUAki_TMT10x_S_F6 52.19 33.115 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8787 3112 8191 46696 56520 56520 1 IGLAEEIR Unmodified 899.50763 0.50763136 1591 Q13085;Q13085-4;Q13085-3;Q13085-2 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 47.717 47.499 2 0.023049 16106 20211116_3441_TMUAki_TMT10x_S_F3 69.198 10.281 5232000 8533500 18459 9396500 7492500 7900300 5395300 5968100 6300600 5778000 6509100 4871700 7965900 482630 9502600 7132500 8097200 5610400 6159800 6377500 5650900 6272700 2 2 2 2 2 2 2 2 2 2 2 2743200 4439900 18256 4972300 5261200 5981900 3324300 3172700 3714200 3134000 3403400 2554400 4144900 279710 5050100 4997100 5968600 3485300 3366400 3750500 3062400 3292800 1 1 1 1 1 1 1 1 1 1 1 2488800 4093600 202.87 4424200 2231200 1918400 2071100 2795400 2586300 2644000 3105700 2317300 3821000 202920 4452600 2135400 2128600 2125100 2793400 2627000 2588500 2979900 1 1 1 1 1 1 1 1 1 1 1 191160000 129920000 61233000 8788 1591 8192 46697;46698;46699 56521;56522 56522 2 IGLETSLR Unmodified 887.50763 0.50763136 3221 Q9Y230;Q9Y230-2 RUVBL2 RuvB-like 2 yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 45.443 45.579 2 0.0032356 11722 20211116_3444_TMUAki_TMT10x_S_F5 101.6 42.996 13557000 20657000 117620 22921000 25683000 26802000 17066000 18669000 17608000 16268000 19315000 12624000 19283000 1354000 23281000 24413000 26882000 17779000 19319000 17950000 15987000 18579000 5 5 3 5 5 5 5 5 5 5 5 10861000 16509000 100340 18322000 23298000 24369000 14660000 14954000 14103000 12944000 15451000 10113000 15411000 1118700 18654000 22125000 24241000 15305000 15619000 14420000 12724000 14864000 4 4 2 4 4 4 4 4 4 4 4 2696800 4148200 17283 4598700 2385200 2433100 2406000 3714300 3505000 3324600 3863100 2511100 3872400 235330 4627300 2288600 2641000 2473500 3700100 3530400 3263100 3715500 1 1 1 1 1 1 1 1 1 1 1 402880000 311550000 91332000 8789 3221 8193 46700;46701;46702 56523;56524;56525;56526;56527 56527 5 IGLETVGVK Unmodified 914.54368 0.54368251 1871 Q16881;Q16881-3;Q16881-4;Q16881-5;Q16881-2;Q16881-6;Q16881-7 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 54.024 54.336 2 6.144E-06 15583 20211116_3445_TMUAki_TMT10x_S_F6 163.99 108.45 4335800 7391100 0 8286000 4626400 3733500 4739300 6141000 6154800 5773500 6483500 4037000 6900000 356100 8321800 4438400 4138300 4845200 6111300 6211200 5653900 6244200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4335800 7391100 0 8286000 4626400 3733500 4739300 6141000 6154800 5773500 6483500 4037000 6900000 356100 8321800 4438400 4138300 4845200 6111300 6211200 5653900 6244200 1 1 0 1 1 1 1 1 1 1 1 618350000 0 618350000 8790 1871 8194 46703;46704 56528 56528 1 IGLEVDRR Unmodified 956.54033 0.54032847 2519 Q96MU7;Q96MU7-2 YTHDC1 YTH domain-containing protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 1.12 1 1 1 1 2 2 33.429 33.361 3 0.00034095 7831 20211116_3431_TMUAki_TMT10x_P_F4 137.42 61.57 1938400 3092100 10720 2849600 2540200 3012500 2186400 2018200 2067500 2375900 2394100 1804700 2884300 157250 2926600 2426000 3036500 2232600 2112900 2120100 2305700 2299400 5 5 3 5 5 5 5 5 5 5 5 1316300 2049000 4049.8 1878100 1874700 2441000 1497400 1367000 1407100 1725600 1607600 1225500 1911300 103630 1936500 1787200 2427900 1535800 1454800 1442500 1670600 1544600 2 2 1 2 2 2 2 2 2 2 2 622110 1043000 6670.3 971460 665570 571490 689040 651290 660460 650310 786500 579260 972990 53617 990120 638860 608660 696810 658130 677630 635170 754810 3 3 2 3 3 3 3 3 3 3 3 191460000 153360000 38095000 8791 2519 8195 46705;46706;46707;46708 56529;56530;56531;56532 56529 4 IGLFGGAGVGK Unmodified 974.55492 0.5549159 518 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3.09 1.83 2 2 4 2 1 6 5 62.314 62.126 2;3 5.9987E-08 20476 20211116_3429_TMUAki_TMT10x_P_F2 144.38 98.657 177860000 280500000 1302100 300520000 202710000 268170000 181620000 196450000 202520000 193800000 220860000 165610000 261810000 15802000 304680000 193880000 273580000 185970000 203280000 205770000 189390000 212490000 18 18 13 18 18 18 18 18 18 18 18 96434000 148810000 829390 158760000 130650000 197080000 104670000 108060000 110640000 107790000 119890000 89793000 138900000 8888900 161830000 124650000 196410000 107710000 114360000 112630000 105280000 115370000 10 10 7 10 10 10 10 10 10 10 10 81426000 131680000 472750 141760000 72053000 71094000 76952000 88385000 91881000 86016000 100970000 75818000 122910000 6913400 142850000 69230000 77173000 78262000 88920000 93142000 84106000 97124000 8 8 6 8 8 8 8 8 8 8 8 13530000000 7933400000 5596800000 8792 518 8196 46709;46710;46711;46712;46713;46714;46715;46716;46717;46718;46719 56533;56534;56535;56536;56537;56538;56539;56540;56541;56542;56543;56544;56545;56546;56547;56548;56549;56550 56536 18 IGLFSHAEIK Unmodified 1113.6182 0.61824444 3019 Q9NYH9 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes yes 0 0 0 0 By MS/MS 7.33 0.471 2 1 3 52.544 52.755 3 6.295E-05 16936 20211116_3446_TMUAki_TMT10x_S_F7 89.171 48.184 1444000 2267000 30024 2680500 1421200 1242700 1264900 1679800 1744400 1556100 1927100 1344700 2116900 147380 2683900 1360600 1364500 1306100 1682100 1760200 1524900 1853400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1444000 2267000 30024 2680500 1421200 1242700 1264900 1679800 1744400 1556100 1927100 1344700 2116900 147380 2683900 1360600 1364500 1306100 1682100 1760200 1524900 1853400 1 1 1 1 1 1 1 1 1 1 1 313560000 0 313560000 8793 3019 8197 46720;46721;46722 56551;56552 56552 2 IGLINDMVR Oxidation (M) 1045.559 0.559015 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 1 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 48.08 48.211 2 0.025825 12691 20211116_3434_TMUAki_TMT10x_P_F6 62.464 47.025 4011700 6706900 30605 7066500 9464600 11079000 5543100 7022100 7190600 5630000 6272200 3735500 6259600 437490 7243600 8978300 10948000 5878700 7302700 7210500 5555900 6079000 2 2 2 2 2 2 2 2 2 2 2 4011700 6706900 30605 7066500 9464600 11079000 5543100 7022100 7190600 5630000 6272200 3735500 6259600 437490 7243600 8978300 10948000 5878700 7302700 7210500 5555900 6079000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 241250000 241250000 0 8794 1684 8198 46723;46724;46725;46726 56553;56554;56555;56556 56554 2249 4 IGLINDMVR Unmodified 1029.5641 0.56410038 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 61.433 61.883 2 0.0018199 18955 20211116_3436_TMUAki_TMT10x_P_F8 93.166 53.216 4563100 7101800 22986 6738700 5915800 8540800 5737500 4408400 3719700 3970000 5415500 4248900 6625300 418680 6927200 5669300 8496700 5766600 4677600 3932700 3895400 5171700 1 1 1 1 1 1 1 1 1 1 1 4563100 7101800 22986 6738700 5915800 8540800 5737500 4408400 3719700 3970000 5415500 4248900 6625300 418680 6927200 5669300 8496700 5766600 4677600 3932700 3895400 5171700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 582830000 582830000 0 8795 1684 8198 46727;46728 56557 56557 1 IGLIQFCLSAPK Unmodified 1345.7428 0.74279303 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 By MS/MS By MS/MS 4.57 0.495 3 4 3 4 77.693 77.69 2;3 1.7161E-12 24878 20211116_3444_TMUAki_TMT10x_S_F5 178.08 139.05 35808000 63219000 65685 57954000 50072000 54434000 41293000 42785000 35997000 40776000 43084000 33338000 58971000 2788500 59442000 47766000 55409000 42180000 44028000 37104000 39907000 41342000 7 7 2 7 7 7 7 7 7 7 7 14588000 24253000 0 22647000 18249000 32388000 17683000 16840000 14183000 16181000 16376000 13580000 22625000 919870 23363000 17462000 32044000 17858000 17887000 14659000 15830000 15729000 2 2 0 2 2 2 2 2 2 2 2 21220000 38966000 65685 35307000 31822000 22046000 23610000 25945000 21814000 24595000 26708000 19758000 36346000 1868600 36079000 30304000 23365000 24322000 26142000 22444000 24077000 25613000 5 5 2 5 5 5 5 5 5 5 5 7717000000 3727100000 3989900000 8796 1147 8199 46729;46730;46731;46732;46733;46734;46735 56558;56559;56560;56561;56562;56563;56564 56563 7 IGLLDPR Unmodified 782.46504 0.46503826 1810 Q15459;Q15459-2 SF3A1 Splicing factor 3A subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 51.171 51.293 2 0.039297 16473 20211116_3446_TMUAki_TMT10x_S_F7 69.39 35.651 7131600 11181000 10909 11701000 12099000 13942000 8130500 10040000 9580700 9018200 9588900 6640000 10435000 631150 11934000 11499000 13978000 8499500 10374000 9683600 8849700 9249800 3 3 1 3 3 3 3 3 3 3 3 5491400 8530500 0 8837600 10234000 12516000 6670600 7829000 7431600 6898300 7310900 5112700 7961000 481850 9049100 9721000 12418000 6976200 8168600 7522800 6775600 7056300 2 2 0 2 2 2 2 2 2 2 2 1640200 2650500 10909 2863900 1864600 1426700 1459900 2210800 2149100 2119800 2277900 1527300 2474000 149300 2885100 1778400 1559700 1523300 2205500 2160800 2074100 2193500 1 1 1 1 1 1 1 1 1 1 1 933900000 530250000 403650000 8797 1810 8200 46736;46737;46738;46739 56565;56566;56567;56568;56569 56569 5 IGLPHSIK Unmodified 863.52289 0.52288749 1711 Q14498;Q14498-2 RBM39 RNA-binding protein 39 yes no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 41.773 41.682 3 0.0016666 10655 20211116_3428_TMUAki_TMT10x_P_F1 98.009 56.03 2460600 3720500 0 3526600 3914000 4006400 2640000 3346000 3477600 3143400 3239500 2290800 3470900 194500 3618500 3718900 4037000 2770400 3429200 3492800 3078300 3132400 2 2 0 2 2 2 2 2 2 2 2 1560000 2301600 0 2171300 3018600 3240300 1804700 2054100 2138600 1925100 2032900 1452300 2147200 132790 2240300 2862700 3208400 1904400 2144500 2157300 1885500 1964400 1 1 0 1 1 1 1 1 1 1 1 900670 1418900 0 1355200 895390 766090 835260 1291900 1339000 1218300 1206600 838510 1323700 61708 1378300 856190 828590 865980 1284700 1335500 1192900 1168100 1 1 0 1 1 1 1 1 1 1 1 226150000 175290000 50855000 8798 1711 8201 46740;46741;46742 56570;56571;56572 56570 3 IGNFIVK Unmodified 789.47487 0.47487467 1473 Q00796;Q00796-2 SORD Sorbitol dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 59.192 59.029 2 0.021061 17980 20211116_3440_TMUAki_TMT10x_S_F2 86.866 12.891 24408000 38378000 132580 40295000 36091000 37754000 26344000 26155000 26586000 25040000 31033000 22727000 35818000 2289800 40935000 34368000 38357000 27239000 27144000 27194000 24501000 29799000 3 3 2 3 3 3 3 3 3 3 3 15632000 24468000 132580 25767000 27391000 30156000 17361000 16303000 17143000 16499000 19733000 14556000 22836000 1584200 26261000 26019000 30139000 18127000 17281000 17541000 16106000 18955000 2 2 2 2 2 2 2 2 2 2 2 8776100 13910000 0 14528000 8700600 7597700 8983500 9851300 9443500 8541000 11300000 8171200 12981000 705600 14674000 8348300 8218200 9111800 9863100 9652900 8395500 10843000 1 1 0 1 1 1 1 1 1 1 1 1725600000 1187300000 538300000 8799 1473 8202 46743;46744;46745 56573;56574;56575 56575 3 IGNSYFKEEK Unmodified 1213.5979 0.59790293 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 42.835 43.099 3 0.00090941 10677 20211116_3434_TMUAki_TMT10x_P_F6 85.522 59.405 7932000 12916000 99840 15029000 24032000 13950000 10455000 12832000 15482000 9637400 14636000 7385800 12060000 934060 15167000 22705000 14253000 11470000 13008000 15500000 9544000 14145000 4 4 2 4 4 4 4 4 4 4 4 3365300 5926800 0 6404600 19266000 9677400 5634300 5734300 7106000 4313300 6309200 3133200 5532100 473580 6548900 18128000 9568200 6473500 5986700 7136500 4271100 6110900 1 1 0 1 1 1 1 1 1 1 1 4566600 6989400 99840 8624200 4766400 4272600 4820600 7097800 8376100 5324100 8327200 4252600 6528000 460480 8617600 4576700 4684500 4996900 7020900 8364000 5272900 8034400 3 3 2 3 3 3 3 3 3 3 3 801000000 428910000 372090000 8800 897 8203 46746;46747;46748;46749 56576;56577;56578;56579;56580 56576 5 IGNTGGMLDNILASK Oxidation (M) 1518.7712 0.77119262 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 1 0 By MS/MS By MS/MS 6.67 0.471 2 4 3 3 63.686 64.131 2;3 9.5628E-06 21166 20211116_3435_TMUAki_TMT10x_P_F7 100.23 72.892 31293000 54519000 605950 55654000 38842000 47711000 31533000 53296000 55494000 48904000 46850000 29141000 50876000 3253000 56577000 37096000 49220000 33110000 53774000 55100000 47943000 45462000 8 8 7 8 8 8 8 8 8 8 8 11534000 19654000 280580 20155000 19450000 28902000 15136000 18702000 18627000 17123000 16913000 10741000 18342000 1316700 20657000 18557000 28674000 15686000 19482000 18737000 16788000 16369000 3 3 2 3 3 3 3 3 3 3 3 19759000 34864000 325370 35498000 19392000 18810000 16398000 34594000 36866000 31781000 29937000 18400000 32535000 1936300 35920000 18538000 20546000 17423000 34292000 36364000 31155000 29093000 5 5 5 5 5 5 5 5 5 5 5 3590800000 1357000000 2233800000 8801 1200 8204 46750;46751;46752;46753;46754;46755 56581;56582;56583;56584;56585;56586;56587;56588;56589 56583 1603 9 IGNTGGMLDNILASK Unmodified 1502.7763 0.776278 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 By MS/MS By MS/MS 6.71 2.37 1 2 4 3 4 76.165 76.174 2;3 3.44E-33 24830 20211116_3436_TMUAki_TMT10x_P_F8 223.06 168 27653000 43717000 305780 47093000 30693000 30668000 31398000 17319000 15430000 21552000 30758000 25749000 40805000 2487400 47559000 29457000 31956000 31317000 18409000 16940000 20875000 29197000 6 6 3 6 6 6 6 6 6 6 6 11721000 17859000 0 20137000 13051000 15843000 14782000 5874800 4590400 7456900 12271000 10913000 16673000 857610 20318000 12549000 16181000 14588000 6523500 5388500 7217700 11600000 2 2 0 2 2 2 2 2 2 2 2 15932000 25858000 305780 26956000 17642000 14825000 16615000 11445000 10839000 14095000 18487000 14836000 24133000 1629700 27240000 16908000 15775000 16728000 11886000 11551000 13657000 17597000 4 4 3 4 4 4 4 4 4 4 4 3926600000 1705300000 2221300000 8802 1200 8204 46756;46757;46758;46759;46760;46761;46762 56590;56591;56592;56593;56594;56595 56590 6 IGPILDNSTLQSEVKPILEK Unmodified 2193.2256 0.22564942 869 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 0 1 By MS/MS By MS/MS 6.5 1.12 2 2 2 2 4 4 77.339 77.346 3 1.468E-32 24718 20211116_3447_TMUAki_TMT10x_S_F8 195.39 185.44 124250000 206700000 715790 193860000 140320000 191810000 146260000 133560000 131490000 138350000 155840000 115690000 192820000 10961000 198640000 134720000 194220000 147590000 138880000 135280000 134920000 149580000 11 11 7 11 11 11 11 11 11 11 11 65542000 108430000 191730 99934000 65490000 122070000 75805000 68683000 69203000 71138000 79377000 61025000 101140000 5380200 102880000 63051000 121790000 76148000 72600000 71052000 69376000 76257000 7 7 3 7 7 7 7 7 7 7 7 58705000 98267000 524060 93924000 74826000 69739000 70455000 64880000 62287000 67210000 76461000 54664000 91677000 5581200 95763000 71668000 72428000 71442000 66280000 64227000 65545000 73321000 4 4 4 4 4 4 4 4 4 4 4 19280000000 9556300000 9723500000 8803 869 8205 46763;46764;46765;46766;46767;46768;46769;46770 56596;56597;56598;56599;56600;56601;56602;56603;56604;56605;56606 56605 11 IGPITPLEFYR Unmodified 1304.7129 0.71287311 1666 Q13867 BLMH Bleomycin hydrolase yes yes 0 0 0 0 By MS/MS 8 0 1 1 74.849 74.87 2 5.291E-07 24296 20211116_3436_TMUAki_TMT10x_P_F8 107.9 76.531 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8804 1666 8206 46771 56607 56607 1 IGPLGLSPK Unmodified 880.5382 0.53820321 864 P30050 RPL12 60S ribosomal protein L12 yes yes 0 0 0 0 By MS/MS By MS/MS 3.17 2.67 4 4 1 1 2 6 6 57.827 57.699 2;3 3.2145E-05 17372 20211116_3440_TMUAki_TMT10x_S_F2 153.78 99.622 80769000 133720000 1528400 136080000 124390000 137990000 90620000 109870000 107700000 98810000 112920000 75214000 124790000 8599100 138690000 118500000 139830000 94214000 112790000 109000000 96958000 108770000 12 12 7 12 12 12 12 12 12 12 12 46380000 73984000 1100900 74982000 87485000 108020000 60745000 62023000 61306000 55832000 63406000 43192000 69039000 5367200 76917000 83274000 106970000 63031000 65197000 62419000 54784000 61101000 6 6 4 6 6 6 6 6 6 6 6 34389000 59740000 427440 61100000 36903000 29972000 29875000 47843000 46389000 42978000 49512000 32022000 55749000 3231900 61770000 35230000 32855000 31182000 47596000 46581000 42175000 47666000 6 6 3 6 6 6 6 6 6 6 6 13488000000 7887600000 5600600000 8805 864 8207 46772;46773;46774;46775;46776;46777;46778;46779;46780;46781;46782;46783 56608;56609;56610;56611;56612;56613;56614;56615;56616;56617;56618;56619;56620;56621;56622 56618 15 IGPQQSISTSVGPSASQR Unmodified 1798.9173 0.91733959 2297 Q8WUD1;Q8WUD1-2 RAB2B Ras-related protein Rab-2B yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.943 1 2 1 2 40.976 41.153 3 1.8084E-17 10518 20211116_3436_TMUAki_TMT10x_P_F8 148.19 118.84 904370 1430500 0 1545500 1398600 1261800 697350 1233400 1461000 1094600 1170700 842020 1335300 40600 1564300 1323100 1302300 767660 1251300 1442600 1074700 1138300 2 2 0 2 2 2 2 2 2 2 2 444940 689290 0 750420 1087400 1072300 425040 621170 665370 565540 626320 414240 643410 40600 766050 1025600 1062400 473210 652660 665000 554630 605400 1 1 0 1 1 1 1 1 1 1 1 459430 741250 0 795060 311210 189580 272310 612240 795620 529020 544360 427780 691860 0 798240 297430 239980 294450 598660 777600 520100 532900 1 1 0 1 1 1 1 1 1 1 1 459960000 198210000 261760000 8806 2297 8208 46784;46785;46786 56623;56624;56625 56623 3 IGPYQPNVPVGIDYVIPK Unmodified 1968.072 0.072049316 1026 P43243;P43243-2 MATR3 Matrin-3 yes no 0 0 0 0 By MS/MS By MS/MS 2.99 2.23 14 29 15 4 8 49 21 49.31 49.235 2;3;4 5.6981E-17 24983 20211116_3447_TMUAki_TMT10x_S_F8 146.07 121.22 155630000 265370000 840770 248680000 185870000 248600000 193080000 167790000 164000000 173180000 204500000 144910000 247550000 11035000 254870000 178390000 251440000 194570000 174840000 169550000 168910000 196020000 57 57 26 57 57 57 57 57 56 57 57 82799000 140790000 294150 125140000 79967000 159270000 97662000 88781000 91540000 90781000 105380000 77094000 131320000 4720200 129280000 77118000 158570000 97948000 93884000 93885000 88579000 101230000 42 42 19 42 42 42 42 42 41 42 42 72834000 124570000 546620 123540000 105910000 89326000 95417000 79008000 72458000 82398000 99121000 67814000 116240000 6315300 125590000 101270000 92878000 96623000 80952000 75665000 80334000 94793000 15 15 7 15 15 15 15 15 15 15 15 46560000000 23791000000 22769000000 8807 1026 8209 46787;46788;46789;46790;46791;46792;46793;46794;46795;46796;46797;46798;46799;46800;46801;46802;46803;46804;46805;46806;46807;46808;46809;46810;46811;46812;46813;46814;46815;46816;46817;46818;46819;46820;46821;46822;46823;46824;46825;46826;46827;46828;46829;46830;46831;46832;46833;46834;46835;46836;46837;46838;46839;46840;46841;46842;46843;46844;46845;46846;46847;46848;46849;46850;46851;46852;46853;46854;46855;46856 56626;56627;56628;56629;56630;56631;56632;56633;56634;56635;56636;56637;56638;56639;56640;56641;56642;56643;56644;56645;56646;56647;56648;56649;56650;56651;56652;56653;56654;56655;56656;56657;56658;56659;56660;56661;56662;56663;56664;56665;56666;56667;56668;56669;56670;56671;56672;56673;56674;56675;56676;56677;56678;56679;56680;56681;56682;56683;56684;56685;56686;56687;56688;56689;56690;56691;56692;56693;56694;56695;56696;56697;56698;56699 56697 74 IGPYTFVQQHLMIGTDPR Oxidation (M) 2088.0462 0.046245271 2440 Q96EB6;Q96EB6-2 SIRT1 NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment yes no 0 0 1 0 By MS/MS By MS/MS 2 0 2 1 1 66.476 66.207 3 0.0020529 20958 20211116_3440_TMUAki_TMT10x_S_F2 60.317 48.34 9316800 16247000 102890 14812000 11101000 17887000 11922000 12316000 11175000 12046000 12707000 8675500 15155000 875580 15258000 10670000 17907000 12027000 12795000 11456000 11776000 12211000 3 3 2 3 3 3 3 3 3 3 3 6960800 11624000 78926 10893000 7712000 14744000 8792000 8753700 7846700 8674400 9292800 6481700 10844000 643450 11222000 7425400 14648000 8832400 9200100 8075400 8475200 8919700 2 2 1 2 2 2 2 2 2 2 2 2356000 4622900 23962 3919400 3389100 3142700 3130200 3562200 3328400 3371900 3414600 2193800 4311100 232130 4036500 3244600 3258900 3194800 3594900 3380500 3301100 3291200 1 1 1 1 1 1 1 1 1 1 1 733240000 416640000 316600000 8808 2440 8210 46857;46858 56700;56701;56702 56702 2752 3 IGQFVFAR Unmodified 936.51814 0.51813647 2930 Q9NRN7;Q9NRN7-2 AASDHPPT L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 60.656 60.229 2 0.001813 20262 20211116_3430_TMUAki_TMT10x_P_F3 108.92 73.431 4231300 6810200 137510 6835800 4705000 4578400 4253400 5805600 5585900 5231200 5642400 3940800 6354700 485590 6938100 4508400 4831000 4379200 5823600 5626400 5132700 5441200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4231300 6810200 137510 6835800 4705000 4578400 4253400 5805600 5585900 5231200 5642400 3940800 6354700 485590 6938100 4508400 4831000 4379200 5823600 5626400 5132700 5441200 1 1 1 1 1 1 1 1 1 1 1 424410000 0 424410000 8809 2930 8211 46859;46860;46861 56703;56704;56705 56703 3 IGQGASGTVFTATDVALGQEVAIK Unmodified 2332.2274 0.22744034 1606 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes yes 0 0 0 0 By MS/MS By MS/MS 6.77 0.576 4 8 1 7 6 90.622 90.618 3 2.2798E-22 30306 20211116_3446_TMUAki_TMT10x_S_F7 143.31 127.37 10317000 17784000 6820.9 18278000 12637000 14506000 12549000 10224000 10168000 11130000 13262000 9604300 16596000 691330 18556000 12103000 14914000 12660000 10638000 10558000 10833000 12697000 9 9 3 9 9 9 9 9 9 9 9 3483000 5903400 924.91 5547900 2985900 6250200 4003600 3159900 3241600 3692200 4236400 3242300 5507200 190580 5695400 2882900 6254600 3984200 3384600 3366400 3584000 4055900 5 5 1 5 5 5 5 5 5 5 5 6833700 11880000 5896 12730000 9651500 8256100 8545100 7063600 6926200 7438200 9025200 6362000 11089000 500740 12860000 9219700 8659900 8675400 7253200 7191600 7249100 8641300 4 4 2 4 4 4 4 4 4 4 4 1649200000 764090000 885120000 8810 1606 8212 46862;46863;46864;46865;46866;46867;46868;46869;46870;46871;46872;46873;46874 56706;56707;56708;56709;56710;56711;56712;56713;56714;56715;56716;56717;56718 56717 13 IGQGYLIK Unmodified 890.52255 0.52255314 975 P39023 RPL3 60S ribosomal protein L3 yes yes 0 0 0 0 By MS/MS By MS/MS 5 3.29 2 1 2 3 2 53.65 53.737 2 0.0025992 15713 20211116_3436_TMUAki_TMT10x_P_F8 107.59 27.654 81630000 134950000 396660 139990000 134400000 145610000 93461000 99963000 104660000 100310000 112490000 76008000 125940000 7864900 142540000 127870000 146970000 97289000 103950000 106260000 97953000 108270000 6 6 4 6 6 6 6 6 6 6 6 46967000 77525000 96050 78909000 106640000 115030000 63325000 57822000 59907000 58249000 63606000 43732000 72344000 4816800 80942000 101170000 113670000 66393000 61690000 61226000 56872000 61244000 3 3 2 3 3 3 3 3 3 3 3 34663000 57425000 300610 61085000 27765000 30581000 30135000 42140000 44756000 42060000 48883000 32277000 53597000 3048200 61602000 26700000 33295000 30896000 42260000 45038000 41081000 47028000 3 3 2 3 3 3 3 3 3 3 3 4694000000 2970800000 1723300000 8811 975 8213 46875;46876;46877;46878;46879 56719;56720;56721;56722;56723;56724 56721 6 IGQGYLIKDGK Unmodified 1190.6659 0.66592292 975 P39023 RPL3 60S ribosomal protein L3 yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 3 1 2 48.032 48.006 3 0.00057553 12842 20211116_3447_TMUAki_TMT10x_S_F8 83.204 57.545 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8812 975 8214 46880;46881;46882 56725;56726;56727 56727 3 IGQLEEQLEQEAK Unmodified 1513.7624 0.76240208 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS By MS/MS 2 1 4 3 2 1 4 6 69.79 69.597 2;3 7.5519E-30 21932 20211116_3428_TMUAki_TMT10x_P_F1 250.51 229.13 48820000 83214000 310090 82980000 59647000 80361000 55477000 55114000 54269000 56534000 63155000 45456000 77647000 4246600 84631000 57091000 81461000 56453000 57353000 55578000 55155000 60648000 13 13 8 13 13 13 13 13 13 13 13 30562000 49905000 225270 49950000 40173000 63432000 38514000 32878000 32626000 34490000 38161000 28457000 46567000 2734900 51155000 38482000 63102000 38971000 35019000 33646000 33618000 36641000 8 8 5 8 8 8 8 8 8 8 8 18258000 33310000 84824 33031000 19474000 16929000 16963000 22236000 21643000 22044000 24994000 17000000 31080000 1511700 33476000 18609000 18359000 17482000 22335000 21932000 21537000 24007000 5 5 3 5 5 5 5 5 5 5 5 4903600000 2774000000 2129600000 8813 935 8215 46883;46884;46885;46886;46887;46888;46889;46890;46891;46892 56728;56729;56730;56731;56732;56733;56734;56735;56736;56737;56738;56739;56740;56741;56742;56743 56730 16 IGQTKPVVVYR Unmodified 1258.7398 0.73975656 2939 Q9NRZ9;Q9NRZ9-4;Q9NRZ9-3;Q9NRZ9-2;Q9NRZ9-6;Q9NRZ9-5 HELLS Lymphoid-specific helicase yes no 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 40.287 40.125 3 1.7639E-08 13079 20211116_3441_TMUAki_TMT10x_S_F3 151.55 120.66 4863000 8036700 11927 7956100 6709100 5536800 5086900 4402300 4665200 3911200 5914400 4527800 7498800 421430 8086100 6391700 5764300 5231600 4518500 4808800 3840100 5666700 3 3 1 3 3 3 3 3 3 3 3 1698500 2829400 0 2670600 3534900 2934200 2030200 1460400 1601600 1385600 2021000 1581300 2639500 149470 2739600 3350500 2939800 2124700 1557000 1662900 1356400 1936600 1 1 0 1 1 1 1 1 1 1 1 3164500 5207300 11927 5285600 3174200 2602600 3056700 2941900 3063700 2525600 3893400 2946500 4859300 271960 5346500 3041200 2824500 3106900 2961500 3145900 2483800 3730200 2 2 1 2 2 2 2 2 2 2 2 246550000 97152000 149400000 8814 2939 8216 46893;46894;46895 56744;56745;56746 56746 3 IGRIEDVTPIPSDSTR Unmodified 1754.9163 0.91627696 1343 P62263 RPS14 40S ribosomal protein S14 yes yes 0 0 0 1 By MS/MS By MS/MS 4.86 0.833 3 2 2 4 3 49.445 49.6 2;3 1.2433E-58 14227 20211116_3431_TMUAki_TMT10x_P_F4 293.13 267.83 29323000 48758000 329750 58385000 43246000 49395000 31315000 41717000 42690000 35256000 40349000 27305000 45532000 2854300 58748000 41181000 50702000 32740000 42609000 42849000 34699000 38996000 11 11 9 11 11 11 11 11 11 11 11 16931000 27295000 112550 31645000 32125000 40486000 23591000 23448000 24677000 19446000 22634000 15765000 25486000 1642400 32108000 30590000 40316000 24409000 24581000 24984000 19157000 21898000 6 6 4 6 6 6 6 6 6 6 6 12392000 21463000 217200 26740000 11121000 8908900 7723800 18268000 18013000 15811000 17715000 11540000 20047000 1212000 26640000 10591000 10386000 8330700 18028000 17865000 15543000 17098000 5 5 5 5 5 5 5 5 5 5 5 9917200000 6224500000 3692800000 8815 1343 8217 46896;46897;46898;46899;46900;46901;46902 56747;56748;56749;56750;56751;56752;56753;56754;56755;56756;56757 56749 11 IGRIEDVTPIPSDSTRR Unmodified 1911.0174 0.017387984 1343 P62263 RPS14 40S ribosomal protein S14 yes yes 0 0 0 2 By MS/MS By MS/MS 6 0.943 1 1 4 3 5 4 42.6 42.854 3;4 1.6985E-35 12732 20211116_3446_TMUAki_TMT10x_S_F7 200.33 166.65 7603300 13912000 126090 13965000 16704000 16675000 9676600 14049000 13569000 9951600 12604000 7080100 12982000 739930 14283000 15846000 16762000 10303000 14294000 13599000 9888000 12189000 8 8 5 8 8 8 8 8 8 8 8 4912100 8966000 63525 9605500 14301000 14618000 8027400 9704100 8955600 6652500 8357300 4573900 8368600 572370 9829000 13557000 14472000 8499300 10023000 9049000 6622900 8080500 4 4 2 4 4 4 4 4 4 4 4 2691200 4946000 62562 4359300 2402700 2057800 1649200 4345200 4613200 3299100 4246900 2506200 4613000 167560 4454200 2288600 2289700 1804000 4271100 4550500 3265200 4108200 4 4 3 4 4 4 4 4 4 4 4 4669800000 3049800000 1620000000 8816 1343 8218 46903;46904;46905;46906;46907;46908;46909;46910;46911 56758;56759;56760;56761;56762;56763;56764;56765 56764 8 IGRNECVVVIR Unmodified 1313.7238 0.72378892 504 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 30.376 30.438 3 5.4709E-06 10695 20211116_3439_TMUAki_TMT10x_S_F1 117.21 75.76 4983900 8271200 53487 8956900 7627900 6902000 5940800 6588200 6186100 5408700 6629200 4640800 7720500 486930 9058300 7273900 7151000 6121800 6678900 6298200 5331100 6381200 3 3 2 3 3 3 3 3 3 3 3 1490300 2734000 49933 2799800 4049900 3671300 2163300 1945000 1938400 1737800 2008300 1388000 2551300 205940 2864700 3838800 3647500 2286000 2058400 1984300 1705800 1935100 1 1 1 1 1 1 1 1 1 1 1 3493600 5537300 3554.7 6157000 3578000 3230700 3777500 4643200 4247600 3670900 4620900 3252800 5169200 280990 6193600 3435100 3503500 3835800 4620500 4313900 3625200 4446100 2 2 1 2 2 2 2 2 2 2 2 412730000 125630000 287100000 8817 504 8219 46912;46913;46914;46915 56766;56767;56768 56767 3 IGRNECVVVIRVDK Unmodified 1655.9141 0.91410889 504 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 0 0 0 2 By MS/MS 1 0 1 1 43.153 42.956 4 0.0081677 13296 20211116_3439_TMUAki_TMT10x_S_F1 61.165 40.502 1122600 2119300 32896 2104200 1064000 987330 1008100 1503900 1608200 1221700 1563900 1045500 1977500 122910 2131000 1020800 1086300 1044100 1494600 1608300 1204800 1510000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1122600 2119300 32896 2104200 1064000 987330 1008100 1503900 1608200 1221700 1563900 1045500 1977500 122910 2131000 1020800 1086300 1044100 1494600 1608300 1204800 1510000 1 1 1 1 1 1 1 1 1 1 1 30267000 0 30267000 8818 504 8220 46916 56769 56769 1 IGRPGYK Unmodified 789.44972 0.44972255 1806 Q15428 SF3A2 Splicing factor 3A subunit 2 yes yes 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 30.561 30.458 3 0.045634 6187 20211116_3428_TMUAki_TMT10x_P_F1 57.559 19.321 4300700 7136100 43806 5999500 5385400 7038100 3846000 3109700 3980300 3502100 5003700 4004700 6654500 411240 6216300 5127700 7017600 3985900 3371800 4079700 3404100 4795200 4 4 3 4 4 4 4 4 4 4 4 3007300 4964100 40041 4139300 3838800 5842600 2152300 2177000 2828300 2476600 3461600 2800400 4628900 298290 4306500 3640800 5764600 2292300 2407400 2870200 2406500 3319700 2 2 2 2 2 2 2 2 2 2 2 1293400 2172000 3765.5 1860200 1546600 1195600 1693700 932700 1152000 1025400 1542000 1204300 2025600 112960 1909800 1486800 1253000 1693600 964350 1209500 997670 1475500 2 2 1 2 2 2 2 2 2 2 2 126260000 84960000 41298000 8819 1806 8221 46917;46918;46919;46920 56770;56771;56772 56770 3 IGRPSETGIIGIIDPECR Unmodified 1982.0255 0.025509829 1847 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 63.264 63.292 3 3.6931E-17 18953 20211116_3444_TMUAki_TMT10x_S_F5 142.88 129.93 53142000 88756000 913160 90250000 64424000 83024000 61262000 57722000 48858000 53097000 67489000 49486000 82825000 4685800 91856000 61738000 84457000 61922000 59826000 50908000 52048000 64527000 10 10 7 10 10 10 10 10 10 10 10 29491000 48000000 257880 49646000 32895000 58789000 36425000 32358000 27632000 28317000 36116000 27460000 44795000 2129600 50668000 31643000 58733000 36490000 34112000 28797000 27822000 34577000 6 6 4 6 6 6 6 6 6 6 6 23652000 40756000 655280 40603000 31529000 24235000 24837000 25364000 21226000 24780000 31373000 22026000 38029000 2556200 41188000 30094000 25724000 25431000 25714000 22111000 24225000 29950000 4 4 3 4 4 4 4 4 4 4 4 8547900000 4426500000 4121400000 8820 1847 8222 46921;46922;46923;46924;46925;46926 56773;56774;56775;56776;56777;56778;56779;56780;56781;56782 56780 10 IGSCTQQDVELHVQK Unmodified 1740.8465 0.84648283 678 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 2 3 43.107 43.149 3 7.7902E-24 11627 20211116_3431_TMUAki_TMT10x_P_F4 181.26 162.43 11161000 17292000 172520 19358000 17776000 18894000 12340000 16096000 16330000 13467000 16543000 10393000 16143000 1178800 19595000 16918000 19213000 12925000 16428000 16446000 13261000 15952000 7 7 7 7 7 7 7 7 7 7 7 6155900 9220500 99825 10363000 12918000 14125000 7669100 8674300 8803400 7315700 9184400 5732500 8607900 698100 10548000 12260000 14035000 8088600 9053800 8919800 7200900 8848100 3 3 3 3 3 3 3 3 3 3 3 5005200 8072000 72696 8994600 4858200 4768900 4671000 7422000 7526300 6151700 7358500 4660900 7535500 480660 9047600 4658000 5178500 4836200 7374200 7525800 6060400 7103700 4 4 4 4 4 4 4 4 4 4 4 1587400000 1025600000 561840000 8821 678 8223 46927;46928;46929;46930;46931 56783;56784;56785;56786;56787;56788;56789 56783 7 IGSFGPQEDLLFLR Unmodified 1590.8406 0.84059282 1591 Q13085;Q13085-4;Q13085-3;Q13085-2 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 0 0 0 0 By MS/MS By MS/MS 6.25 0.829 1 1 2 3 1 78.957 78.982 2 3.9865E-37 27833 20211116_3446_TMUAki_TMT10x_S_F7 245.46 213.83 14572000 23045000 34834 21351000 15424000 19615000 16091000 11758000 11650000 12437000 15837000 13566000 21497000 943330 21875000 14788000 19913000 16149000 12371000 12195000 12118000 15148000 3 3 1 3 3 3 3 3 3 3 3 8341900 13309000 34834 12548000 7614000 13485000 8690700 6656300 6643300 7296200 9484400 7766700 12416000 625710 12868000 7324100 13526000 8695700 7131500 6948800 7099500 9061300 2 2 1 2 2 2 2 2 2 2 2 6230300 9735800 0 8803300 7809600 6129600 7400100 5101300 5007200 5140300 6352700 5799200 9081000 317620 9006700 7463500 6386200 7453600 5239700 5246500 5018700 6086600 1 1 0 1 1 1 1 1 1 1 1 2217400000 1268300000 949100000 8822 1591 8224 46932;46933;46934;46935 56790;56791;56792;56793 56793 4 IGSGVER Unmodified 716.3817 0.38170256 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS 3 0 1 1 29.521 29.258 2 0.044828 8767 20211116_3441_TMUAki_TMT10x_S_F3 71.922 23.576 293100 489340 276.4 410660 318190 287200 360870 222410 242830 241670 342610 272910 456310 24909 422650 306190 298740 360160 229980 255740 235230 327410 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 293100 489340 276.4 410660 318190 287200 360870 222410 242830 241670 342610 272910 456310 24909 422650 306190 298740 360160 229980 255740 235230 327410 1 1 1 1 1 1 1 1 1 1 1 13194000 0 13194000 8823 1171 8225 46936 56794 56794 1 IGSLASGNVR Unmodified 972.53524 0.53524309 2792 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein yes yes 0 0 0 0 By MS/MS 8 0 1 1 37.522 37.795 2 0.0092283 9137 20211116_3436_TMUAki_TMT10x_P_F8 68.846 34.593 284440 477500 374.83 505510 680050 750740 390170 446840 502200 329870 426100 264850 445660 29472 517400 644800 742850 414390 466150 503300 326990 413400 1 1 1 1 1 1 1 1 1 1 1 284440 477500 374.83 505510 680050 750740 390170 446840 502200 329870 426100 264850 445660 29472 517400 644800 742850 414390 466150 503300 326990 413400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12906000 12906000 0 8824 2792 8226 46937 56795 56795 1 IGSPYCLHLRVK Unmodified 1441.7864 0.78638918 2869 Q9HCM4;Q9HCM4-2;Q9HCM4-4;Q9HCM4-3 EPB41L5 Band 4.1-like protein 5 yes no 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 1 2 37.653 37.54 4 0.097218 11996 20211116_3441_TMUAki_TMT10x_S_F3 37.681 1.3774 2666900 3982500 16724 4001500 4099700 3713100 2395700 2455800 2329100 1958600 2974900 2483300 3716200 256760 4076600 3889200 3772200 2517100 2545400 2395300 1933400 2849800 2 2 2 2 2 2 2 2 2 2 2 1642400 2396000 2215.1 2292100 3120400 2860700 1459500 1474800 1480300 1140400 1724800 1529200 2235300 158930 2354100 2950400 2848100 1568000 1559400 1513700 1127600 1656300 1 1 1 1 1 1 1 1 1 1 1 1024600 1586500 14509 1709500 979290 852330 936160 980980 848790 818160 1250200 954080 1480800 97831 1722400 938790 924050 949140 986020 881560 805770 1193600 1 1 1 1 1 1 1 1 1 1 1 212140000 110160000 101970000 8825 2869 8227 46938;46939;46940 56796 56796 1 IGSSLYALGTQDSTDICK Unmodified 1927.9197 0.91970735 3192 Q9UNH7;Q9UNH7-2 SNX6 Sorting nexin-6;Sorting nexin-6, N-terminally processed yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 67.922 67.896 3 6.3184E-07 20801 20211116_3434_TMUAki_TMT10x_P_F6 100.77 88.978 5969600 11113000 227530 10662000 7810600 12583000 7611900 6951400 6498700 7419200 8085400 5560000 10368000 732760 10937000 7498000 12573000 7697000 7365900 6716300 7226700 7750600 2 2 2 2 2 2 2 2 2 2 2 5969600 11113000 227530 10662000 7810600 12583000 7611900 6951400 6498700 7419200 8085400 5560000 10368000 732760 10937000 7498000 12573000 7697000 7365900 6716300 7226700 7750600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 536250000 536250000 0 8826 3192 8228 46941;46942 56797;56798;56799 56798 3 IGTADRELIQTSALNFLTPLR Unmodified 2328.2801 0.28014461 3262 Q9Y371;Q9Y371-2;Q9Y371-3 SH3GLB1 Endophilin-B1 yes no 0 0 0 1 By MS/MS 3 0 1 1 78.368 78.297 3 7.391E-08 28536 20211116_3441_TMUAki_TMT10x_S_F3 92.792 73.717 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8827 3262 8229 46943 56800 56800 1 IGTDIQDNK Unmodified 1002.4982 0.49818889 667 P14324;P14324-2 FDPS Farnesyl pyrophosphate synthase yes no 0 0 0 0 By MS/MS 4 0 1 1 39.05 39.231 2 0.0019669 10516 20211116_3442_TMUAki_TMT10x_S_F4 91.265 45.953 349080 557880 0 515070 370510 310410 319690 392470 467240 374080 483480 325020 520400 28619 525420 353940 330690 331500 394340 469460 366100 465900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 349080 557880 0 515070 370510 310410 319690 392470 467240 374080 483480 325020 520400 28619 525420 353940 330690 331500 394340 469460 366100 465900 1 1 0 1 1 1 1 1 1 1 1 14758000 0 14758000 8828 667 8230 46944 56801 56801 1 IGTVMTFL Unmodified 880.47283 0.47282576 861 P30046 DDT D-dopachrome decarboxylase yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 81.62 81.631 2 0.0066965 27088 20211116_3436_TMUAki_TMT10x_P_F8 91.584 86.444 682750 1082400 14453 1092400 749480 1002000 907950 707150 642060 761000 835000 635820 1010000 71009 1112400 723490 1019800 904450 735480 671670 741020 799520 2 2 2 2 2 2 2 2 2 2 2 292660 437430 8522.4 445460 311730 560660 401370 303060 280860 344400 357630 272560 408200 32473 455600 301670 558270 398710 322370 293730 334650 342610 1 1 1 1 1 1 1 1 1 1 1 390090 644940 5930.1 646970 437740 441390 506570 404100 361200 416600 477370 363260 601810 38535 656800 421820 461500 505740 413110 377940 406360 456910 1 1 1 1 1 1 1 1 1 1 1 146690000 70374000 76315000 8829 861 8231 46945;46946;46947;46948 56802;56803 56802 2 IGVGGGAASSVQVQGDNTSDLDFGAVQR Unmodified 2704.3052 0.30524974 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 0 By MS/MS 5 0 1 1 63.545 63.694 3 2.8426E-06 20234 20211116_3433_TMUAki_TMT10x_P_F5 74.748 64.96 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8830 157 8232 46949 56804 56804 1 IGVGLNK Unmodified 699.42792 0.42792448 3360 yes no 0 0 0 0 By MS/MS By MS/MS 7.43 0.495 4 3 3 4 40.503 40.871 2 0.033338 10435 20211116_3436_TMUAki_TMT10x_P_F8 78.166 46.052 + 20669000 33188000 209160 33827000 23877000 24847000 24084000 15566000 17174000 16145000 25813000 19247000 30970000 1935400 34329000 22911000 25657000 24205000 16312000 18081000 15744000 24634000 10 10 7 10 10 10 10 10 10 10 10 9602100 15370000 85681 15924000 13045000 15320000 10612000 7343600 8035600 7558100 12139000 8941100 14344000 916110 16197000 12452000 15465000 10812000 7875400 8433200 7372800 11583000 2 2 1 2 2 2 2 2 2 2 2 11067000 17818000 123480 17902000 10832000 9527000 13472000 8222000 9138800 8586500 13675000 10306000 16626000 1019300 18132000 10460000 10193000 13393000 8436400 9647700 8371000 13051000 8 8 6 8 8 8 8 8 8 8 8 1210500000 565740000 644740000 8831 3360 8233 46950;46951;46952;46953;46954;46955;46956 56805;56806;56807;56808;56809;56810 56806 6 IGVITNR Unmodified 771.46029 0.46028724 1362 P62701 RPS4X 40S ribosomal protein S4, X isoform yes yes 0 0 0 0 By MS/MS By MS/MS 5.11 2.77 2 1 2 2 2 4 5 36.329 36.51 2 0.0025713 8859 20211116_3428_TMUAki_TMT10x_P_F1 124.34 83.041 8179200 13322000 177910 12967000 9637300 11091000 8026900 6949000 7555600 7014700 9414600 7617000 12430000 864340 13225000 9211000 11322000 8211600 7276300 7773100 6848200 9024400 8 8 8 8 8 8 8 8 8 8 8 4344300 6818100 119100 6699200 5677800 7952600 3778900 3538700 3861000 3604000 4726600 4045900 6361500 489850 6861400 5403600 7925100 3934900 3822600 3955000 3517100 4532800 4 4 4 4 4 4 4 4 4 4 4 3834800 6504100 58813 6267400 3959400 3138600 4248000 3410300 3694600 3410700 4688000 3571100 6068100 374490 6363700 3807300 3396500 4276700 3453700 3818100 3331100 4491600 4 4 4 4 4 4 4 4 4 4 4 2485700000 1287500000 1198200000 8832 1362 8234 46957;46958;46959;46960;46961;46962;46963;46964;46965 56811;56812;56813;56814;56815;56816;56817;56818;56819 56811 9 IGVLDEGK Unmodified 829.45453 0.45453316 1054 P46781 RPS9 40S ribosomal protein S9 yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.745 3 2 1 4 2 48.818 48.867 2 0.0018179 14315 20211116_3442_TMUAki_TMT10x_S_F4 106.36 47.439 15069000 23879000 0 23966000 27398000 26461000 18321000 13039000 13769000 12527000 17477000 14030000 22282000 1377400 24480000 26040000 26502000 18917000 13919000 14338000 12255000 16744000 2 2 0 2 2 2 2 2 2 2 2 15069000 23879000 0 23966000 27398000 26461000 18321000 13039000 13769000 12527000 17477000 14030000 22282000 1377400 24480000 26040000 26502000 18917000 13919000 14338000 12255000 16744000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 765610000 765610000 0 8833 1054 8235 46966;46967;46968;46969;46970;46971 56820;56821;56822;56823;56824;56825 56825 6 IGVPFPK Unmodified 756.45341 0.45341094 2065 Q7L9L4;Q9H8S9;Q7L9L4-2 MOB1B;MOB1A MOB kinase activator 1B;MOB kinase activator 1A yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 57.571 57.334 2 0.016934 17273 20211116_3440_TMUAki_TMT10x_S_F2 91.26 26.394 16557000 26224000 178900 29148000 19982000 19828000 17195000 15392000 16047000 15159000 20468000 15417000 24481000 1587400 29390000 19100000 20675000 17552000 15866000 16532000 14815000 19608000 3 3 3 3 3 3 3 3 3 3 3 7205700 11012000 92978 11976000 10731000 11861000 7752800 6228000 6453000 6095100 8678800 6710000 10279000 733430 12148000 10220000 11964000 7979400 6612500 6700700 5958300 8303200 1 1 1 1 1 1 1 1 1 1 1 9350900 15212000 85921 17172000 9251200 7967600 9442100 9163800 9593800 9064300 11790000 8707300 14202000 853940 17242000 8880500 8711500 9572300 9253800 9831300 8856800 11305000 2 2 2 2 2 2 2 2 2 2 2 895800000 536630000 359170000 8834 2065 8236 46972;46973;46974 56826;56827;56828;56829 56828 4 IGVPSATEIIK Unmodified 1126.6598 0.6597749 2918 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 0 By MS/MS By MS/MS 6.85 0.863 1 3 6 3 3 10 61.388 61.563 2;3 1.246E-14 18936 20211116_3433_TMUAki_TMT10x_P_F5 163.94 102.97 33863000 59535000 367070 63645000 45875000 61748000 36126000 58168000 41544000 54025000 41530000 31531000 55567000 3104400 64610000 43751000 62941000 37322000 59198000 42011000 52934000 40063000 11 11 5 11 11 11 11 11 10 11 10 15976000 27971000 301240 28501000 31666000 42398000 24199000 22837000 22160000 21413000 22506000 14877000 26102000 1786600 29246000 30191000 41895000 24873000 24164000 22645000 20972000 21700000 2 2 1 2 2 2 2 2 2 2 2 17887000 31564000 65825 35145000 14209000 19350000 11927000 35331000 19385000 32612000 19024000 16654000 29466000 1317900 35364000 13560000 21046000 12448000 35034000 19365000 31962000 18363000 9 9 4 9 9 9 9 9 8 9 8 3661700000 2060400000 1601300000 8835 2918 8237 46975;46976;46977;46978;46979;46980;46981;46982;46983;46984;46985;46986;46987 56830;56831;56832;56833;56834;56835;56836;56837;56838;56839;56840;56841;56842;56843;56844 56830 15 IGWSLDSCSTQLGEEPFSYGYGGTGKK Unmodified 2923.3334 0.33343833 2675 Q9BUJ2;Q9BUJ2-4;Q9BUJ2-2 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 0 0 0 1 By matching By MS/MS 8 0 2 1 1 74.236 74.18 4 4.4331E-34 23475 20211116_3447_TMUAki_TMT10x_S_F8 178.58 170.91 3552400 5463700 73021 5368000 4647000 3243500 4278000 2432900 1924800 2844200 4108100 3308200 5097900 377900 5451200 4450900 3417100 4285800 2526900 2138600 2760900 3895300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3552400 5463700 73021 5368000 4647000 3243500 4278000 2432900 1924800 2844200 4108100 3308200 5097900 377900 5451200 4450900 3417100 4285800 2526900 2138600 2760900 3895300 2 2 2 2 2 2 2 2 2 2 2 1371400000 831000000 540440000 8836 2675 8238 46988;46989 56845;56846 56845 2 IGYNPDTVAFVPISGWNGDNMLEPSANMPWFK 2 Oxidation (M) 3598.6537 0.65372661 1416 P68104;Q5VTE0 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 0 0 2 0 By MS/MS By MS/MS 5.09 3 6 2 1 1 5 7 8 14 83.12 83.122 3;4 1.112E-07 26591 20211116_3445_TMUAki_TMT10x_S_F6 81.697 70.694 124210000 203200000 916860 189120000 127760000 173990000 176480000 60547000 48769000 87082000 134830000 115660000 189550000 7388000 193700000 123760000 175640000 172510000 68080000 58256000 83956000 127410000 59 59 34 59 59 59 59 59 59 59 59 67226000 105440000 326860 101320000 70789000 114340000 95512000 29974000 22292000 42477000 64747000 62595000 98368000 3572100 103850000 68504000 113780000 93323000 35107000 27389000 40970000 61144000 21 21 11 21 21 21 21 21 21 21 21 56985000 97763000 590000 87800000 56975000 59654000 80968000 30573000 26477000 44606000 70087000 53062000 91186000 3815900 89854000 55260000 61854000 79188000 32973000 30868000 42986000 66261000 38 38 23 38 38 38 38 38 38 38 38 72269000000 48073000000 24195000000 8837 1416 8239 46990;46991;46992;46993;46994;46995;46996;46997;46998;46999;47000;47001;47002;47003;47004;47005;47006;47007;47008;47009;47010;47011 56847;56848;56849;56850;56851;56852;56853;56854;56855;56856;56857;56858;56859;56860;56861;56862;56863;56864;56865;56866;56867;56868;56869;56870;56871;56872;56873;56874;56875;56876;56877;56878;56879;56880;56881;56882;56883;56884;56885;56886;56887;56888;56889;56890;56891;56892;56893;56894;56895;56896;56897;56898;56899;56900;56901;56902;56903;56904;56905 56882 1900;1901 59 IGYNPDTVAFVPISGWNGDNMLEPSANMPWFK Oxidation (M) 3582.6588 0.65881199 1416 P68104;Q5VTE0 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 0 0 1 0 By MS/MS By MS/MS 4.24 3 5 4 5 3 8 9 81.845 81.846 3;4 2.7238E-12 28430 20211116_3435_TMUAki_TMT10x_P_F7 101.93 95.638 110140000 163050000 319440 180520000 111030000 93918000 158470000 20072000 13034000 30802000 96734000 102540000 152210000 6580800 181630000 107590000 99359000 153760000 24456000 22572000 29640000 90724000 34 34 15 34 34 34 34 34 33 34 34 64298000 93043000 153650 102230000 73056000 67616000 100580000 11164000 6158100 15689000 56412000 59864000 86853000 3841600 103120000 70709000 69749000 97662000 14336000 12158000 15136000 52862000 16 16 6 16 16 16 16 16 15 16 16 45843000 70010000 165790 78291000 37977000 26302000 57892000 8907500 6875400 15112000 40321000 42680000 65358000 2739200 78507000 36880000 29611000 56102000 10120000 10414000 14504000 37861000 18 18 9 18 18 18 18 18 18 18 18 54520000000 36745000000 17776000000 8838 1416 8239 47012;47013;47014;47015;47016;47017;47018;47019;47020;47021;47022;47023;47024;47025;47026;47027;47028 56906;56907;56908;56909;56910;56911;56912;56913;56914;56915;56916;56917;56918;56919;56920;56921;56922;56923;56924;56925;56926;56927;56928;56929;56930;56931;56932;56933;56934;56935;56936;56937;56938;56939;56940 56917 1900;1901 35 IGYNPDTVAFVPISGWNGDNMLEPSANMPWFK Unmodified 3566.6639 0.66389736 1416 P68104;Q5VTE0 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 2 4 3 3 82.247 82.239 3;4 1.4933E-11 27215 20211116_3428_TMUAki_TMT10x_P_F1 100.95 90.527 17637000 26636000 85306 37411000 16100000 8436200 22708000 3468100 4231500 3880700 15544000 16420000 24895000 899760 36971000 15587000 10270000 22116000 3789200 5514800 3758400 14645000 7 7 2 7 7 7 7 7 7 6 7 4253400 6695600 31383 11549000 6080800 3861800 8974200 601310 1083300 322140 5075800 3960500 6265800 126510 11324000 5905200 4335000 8707400 767560 1589100 311390 4772900 2 2 1 2 2 2 2 2 2 1 2 13383000 19941000 53923 25862000 10019000 4574400 13734000 2866800 3148200 3558600 10468000 12459000 18629000 773250 25647000 9681600 5934800 13409000 3021600 3925700 3447000 9871600 5 5 1 5 5 5 5 5 5 5 5 3974300000 2133300000 1841100000 8839 1416 8239 47029;47030;47031;47032;47033;47034 56941;56942;56943;56944;56945;56946;56947 56941 7 IGYQVTAMIGHTNVVVPR Oxidation (M) 1970.0408 0.040765963 2792 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein yes yes 0 0 1 0 By MS/MS 2 0 1 1 53.667 53.417 3 0.010489 16979 20211116_3429_TMUAki_TMT10x_P_F2 46.461 34.485 2337500 3943100 0 3418400 2736800 4220800 2634800 2590600 2651100 2620400 2729700 2176200 3677400 161910 3536400 2619200 4213800 2678400 2717100 2699100 2558000 2630800 1 1 0 1 1 1 1 1 1 1 1 2337500 3943100 0 3418400 2736800 4220800 2634800 2590600 2651100 2620400 2729700 2176200 3677400 161910 3536400 2619200 4213800 2678400 2717100 2699100 2558000 2630800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 237850000 237850000 0 8840 2792 8240 47035 56948 56948 2952 1 IGYQVTAMIGHTNVVVPR Unmodified 1954.0459 0.045851341 2792 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein yes yes 0 0 0 0 By MS/MS 4 0 1 1 63.995 63.838 3 2.4751E-15 20542 20211116_3442_TMUAki_TMT10x_S_F4 130.27 113.2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8841 2792 8240 47036 56949 56949 1 IGYSHENVSVIPNCQFR Unmodified 2018.9632 0.96324392 2753 Q9GZN1;Q9GZN1-2 ACTR6 Actin-related protein 6 yes no 0 0 0 0 By MS/MS 8 0 1 1 49.199 49.099 3 0.0059192 13262 20211116_3447_TMUAki_TMT10x_S_F8 57.703 39.565 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8842 2753 8241 47037 56950 56950 1 IHACLYFIAPTGHSLK Unmodified 1826.9502 0.95016004 2965 Q9NVA2;Q9NVA2-2 SEPT11 Septin-11 yes no 0 0 0 0 By MS/MS By matching 4.5 0.5 1 1 1 1 54.175 54.343 4 1.2077E-11 16115 20211116_3431_TMUAki_TMT10x_P_F4 139.86 126.98 6153200 8969600 50853 11052000 11867000 14710000 7211400 6830900 6434800 6558500 7848300 5727400 8377400 367210 11182000 11247000 14583000 7534200 7334700 6630400 6416600 7527200 2 2 1 2 2 2 2 2 2 2 2 6153200 8969600 50853 11052000 11867000 14710000 7211400 6830900 6434800 6558500 7848300 5727400 8377400 367210 11182000 11247000 14583000 7534200 7334700 6630400 6416600 7527200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1236800000 821750000 415070000 8843 2965 8242 47038;47039 56951;56952 56951 2 IHAENAIR Unmodified 922.49846 0.49846366 2067 Q7LBR1 CHMP1B Charged multivesicular body protein 1b yes yes 0 0 0 0 By MS/MS 4 0 1 1 27.864 27.912 3 0.041287 5466 20211116_3431_TMUAki_TMT10x_P_F4 45.972 5.3996 122120 181080 556.7 190780 155700 217940 147070 102180 129970 126370 145850 113710 169010 11113 194350 149110 217750 149100 110450 133540 122430 140200 1 1 1 1 1 1 1 1 1 1 1 122120 181080 556.7 190780 155700 217940 147070 102180 129970 126370 145850 113710 169010 11113 194350 149110 217750 149100 110450 133540 122430 140200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6803800 6803800 0 8844 2067 8243 47040 56953 56953 1 IHAEVQLK Unmodified 936.53927 0.53926584 1877 Q2M389;Q2M389-2 KIAA1033 WASH complex subunit 7 yes no 0 0 0 0 By MS/MS 5 0 1 1 36.719 36.881 3 0.0037036 8275 20211116_3444_TMUAki_TMT10x_S_F5 82.529 49.689 424750 694400 3072.9 718390 494580 381870 458860 494780 471590 418310 609510 395500 648040 39056 726150 473510 412320 467700 495070 484100 411700 583700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 424750 694400 3072.9 718390 494580 381870 458860 494780 471590 418310 609510 395500 648040 39056 726150 473510 412320 467700 495070 484100 411700 583700 1 1 1 1 1 1 1 1 1 1 1 29534000 0 29534000 8845 1877 8244 47041 56954 56954 1 IHAFVQDTTLSEPR Unmodified 1612.8209 0.82092001 2187 Q8N1G2 CMTR1 Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 yes yes 0 0 0 0 By MS/MS By matching 5.5 0.5 1 1 1 1 46.173 46.328 3 0.069969 13179 20211116_3433_TMUAki_TMT10x_P_F5 33.265 23.578 7328700 11063000 251260 13090000 23068000 27710000 11283000 17620000 12634000 12972000 13678000 6825600 10331000 1062200 13429000 21837000 27101000 12103000 18285000 12831000 12860000 13163000 1 1 1 1 1 1 1 1 1 1 1 7328700 11063000 251260 13090000 23068000 27710000 11283000 17620000 12634000 12972000 13678000 6825600 10331000 1062200 13429000 21837000 27101000 12103000 18285000 12831000 12860000 13163000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 696790000 412050000 284740000 8846 2187 8245 47042;47043 56955 56955 1 IHDLALR Unmodified 836.48684 0.48683634 2898 Q9NQ29;Q9NQ29-2;Q9NQ29-3 LUC7L Putative RNA-binding protein Luc7-like 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.353 35.407 3 0.00050863 7528 20211116_3444_TMUAki_TMT10x_S_F5 138.37 38.983 573230 843110 1020.8 939800 1098800 1105100 673170 708150 730790 705210 735350 533700 787080 50199 954390 1042600 1106700 706870 739950 741100 688860 709230 3 3 1 3 3 3 3 3 3 3 3 445770 622700 0 707800 964930 960370 521850 564530 573130 544690 573930 415010 581360 38590 719840 913710 953890 554090 593360 580840 532790 553620 2 2 0 2 2 2 2 2 2 2 2 127460 220420 1020.8 232000 133890 144720 151320 143620 157670 160520 161430 118680 205720 11609 234560 128880 152790 152780 146590 160260 156070 155610 1 1 1 1 1 1 1 1 1 1 1 235110000 183990000 51120000 8847 2898 8246 47044;47045;47046 56956;56957;56958 56958 3 IHDPQLLTER Unmodified 1220.6513 0.65133548 678 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 3.57 1.18 2 1 2 2 3 4 34.535 34.516 3 6.9677E-05 10255 20211116_3429_TMUAki_TMT10x_P_F2 118.6 87.309 2670300 4019600 46880 5050300 5085100 4178600 3137200 3768500 4071300 3050600 4089600 2486600 3754500 295350 5066300 4829400 4301400 3313000 3830700 4101600 3008900 3944500 7 7 5 7 7 7 7 7 7 7 7 1281400 1857500 20809 2508600 3698800 3019900 1845000 1776500 1997900 1504600 2023700 1193300 1735700 158730 2520900 3501100 3017000 1973100 1860900 2026800 1480700 1951400 2 2 1 2 2 2 2 2 2 2 2 1388900 2162000 26071 2541700 1386300 1158700 1292300 1991900 2073300 1546000 2065900 1293400 2018800 136620 2545500 1328300 1284400 1339900 1969800 2074800 1528300 1993100 5 5 4 5 5 5 5 5 5 5 5 749880000 531230000 218650000 8848 678 8247 47047;47048;47049;47050;47051;47052;47053 56959;56960;56961;56962;56963;56964;56965;56966 56959 8 IHEATGMPAGK Oxidation (M) 1126.5441 0.54409322 1810 Q15459;Q15459-2 SF3A1 Splicing factor 3A subunit 1 yes no 0 0 1 0 By MS/MS 4.5 0.5 1 1 2 29.069 28.999 3 0.0057628 5932 20211116_3431_TMUAki_TMT10x_P_F4 66.056 45.726 240370 408750 0 400680 361280 414380 279750 172020 245910 190510 274170 223800 381380 20762 409530 344310 415850 286970 187680 252650 185300 263610 1 1 0 1 1 1 1 1 1 1 1 240370 408750 0 400680 361280 414380 279750 172020 245910 190510 274170 223800 381380 20762 409530 344310 415850 286970 187680 252650 185300 263610 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7885700 7885700 0 8849 1810 8248 47054;47055 56967;56968 56967 2435 2 IHEDSTGGIYTVGVTTR Unmodified 1804.8955 0.89554151 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4;Q7Z4S6-6 KIF21A Kinesin-like protein KIF21A yes no 0 0 0 0 By MS/MS By MS/MS 4.56 1.26 2 3 2 1 1 5 4 42.113 42.301 2;3 9.3812E-30 10409 20211116_3444_TMUAki_TMT10x_S_F5 193.32 173.72 4349600 7040400 91803 8139700 8017100 8835500 5577100 6050300 6882900 4751400 6512500 4050500 6573500 489740 8236600 7630900 8895500 5825100 6253200 6931900 4694000 6293900 6 6 5 6 6 6 6 6 6 6 6 2714200 4565200 65986 5098100 6754100 7541400 4316800 4013600 4836900 3064900 4199100 2527700 4261800 335310 5199800 6418400 7452700 4522300 4230400 4875400 3032400 4070500 3 3 2 3 3 3 3 3 3 3 3 1635400 2475200 25817 3041600 1263000 1294200 1260200 2036700 2046000 1686500 2313400 1522900 2311700 154430 3036800 1212500 1442900 1302800 2022800 2056600 1661600 2223400 3 3 3 3 3 3 3 3 3 3 3 1294400000 798800000 495550000 8850 2082 8249 47056;47057;47058;47059;47060;47061;47062;47063;47064 56969;56970;56971;56972;56973;56974;56975;56976;56977 56976 9 IHEGCEEPATHNALAK Unmodified 1775.8261 0.82608174 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 4 1 31.519 31.455 3;4 1.3943E-52 6947 20211116_3431_TMUAki_TMT10x_P_F4 262.66 239.43 1674400 2636500 8670.2 2643600 3341000 2803800 1852600 1325600 1582300 1323700 2074900 1558900 2460100 156520 2698800 3165700 2813200 1948600 1422300 1639000 1292800 1986400 4 4 1 4 4 4 4 4 4 4 4 1295900 2021700 0 1967200 2934300 2450800 1419700 1081400 1262200 1023500 1576300 1206500 1886300 116670 2018000 2774600 2436100 1514400 1166900 1302100 1002000 1510800 3 3 0 3 3 3 3 3 3 3 3 378410 614710 8670.2 676390 406730 352950 432870 244200 320160 300140 498690 352400 573820 39850 680830 391170 377070 434220 255450 336980 290830 475540 1 1 1 1 1 1 1 1 1 1 1 622970000 374930000 248040000 8851 1471 8250 47065;47066;47067;47068;47069 56978;56979;56980;56981 56978 4 IHEPIMLK Unmodified 979.55247 0.55247306 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 44.536 44.78 3 0.0011897 11316 20211116_3434_TMUAki_TMT10x_P_F6 98.299 82.097 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8852 1684 8251 47070;47071;47072 56982;56983;56984 56982 3 IHEPIMLK Oxidation (M) 995.54739 0.54738768 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 1 0 By MS/MS 6 0 1 1 40.265 40.429 3 0.010288 9939 20211116_3445_TMUAki_TMT10x_S_F6 64.265 48.062 300400 504620 3825.9 542160 293770 259450 280420 384360 353590 317010 442720 279730 471000 28378 546210 281580 284560 287410 382470 359680 312390 424320 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 300400 504620 3825.9 542160 293770 259450 280420 384360 353590 317010 442720 279730 471000 28378 546210 281580 284560 287410 382470 359680 312390 424320 1 1 1 1 1 1 1 1 1 1 1 76041000 0 76041000 8853 1684 8251 47073 56985 56985 2250 1 IHFFLSK Unmodified 890.50142 0.50142377 942 P35659;P35659-2 DEK Protein DEK yes no 0 0 0 0 By MS/MS 5 0 1 1 55.677 55.875 3 0.0036856 17027 20211116_3433_TMUAki_TMT10x_P_F5 97.068 74.92 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8854 942 8252 47074 56986 56986 1 IHFPDFSTR Unmodified 1118.5509 0.55089316 343 O75530;O75530-2;O75530-3 EED Polycomb protein EED yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 52.058 52.058 3 0.0014186 14451 20211116_3447_TMUAki_TMT10x_S_F8 80.676 53.195 1115100 1824700 9912.3 2144600 1466900 1476300 1313000 925140 932970 1000800 1402900 1038300 1703800 105050 2155300 1403200 1532800 1328100 970700 982440 974290 1338700 2 2 1 2 2 2 2 2 2 2 2 552270 920640 9912.3 1063000 937390 1047600 748130 462640 484760 522810 720090 514290 859590 60418 1074100 894650 1055000 760600 501700 513040 508120 687360 1 1 1 1 1 1 1 1 1 1 1 562820 904010 0 1081600 529500 428660 564910 462500 448210 477960 682770 524030 844200 44631 1081100 508500 477730 567540 469000 469400 466170 651380 1 1 0 1 1 1 1 1 1 1 1 305150000 107230000 197920000 8855 343 8253 47075;47076 56987;56988 56988 2 IHFPLATYAPVISAEK Unmodified 1755.956 0.95595693 1417;2044;2007 P68363;P68363-2;P68366;P68366-2;Q71U36;Q71U36-2;Q9BQE3;P0DPH8;P0DPH7;P0DPH7-2;Q6PEY2 TUBA1B;TUBA4A;TUBA1A;TUBA1C;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-3E chain no no 0 0 0 0 By MS/MS By MS/MS 2.94 1.8 39 72 81 19 2 2 8 15 123 115 69.143 69.097 2;3;4 2.1015E-69 21507 20211116_3447_TMUAki_TMT10x_S_F8 309.66 280.12 1603900000 2669400000 6963700 2420200000 1721300000 2333900000 1822000000 1530100000 1493900000 1599900000 1833000000 1493300000 2489900000 80595000 2485400000 1652400000 2364900000 1832700000 1598400000 1546100000 1559700000 1757700000 283 284 120 284 284 284 283 284 283 283 284 970720000 1574500000 4647600 1417400000 923030000 1594300000 1028100000 890560000 884580000 944990000 1038300000 903800000 1468600000 52024000 1459700000 887330000 1597500000 1032900000 942610000 911640000 920690000 996880000 165 166 64 166 166 166 165 166 165 165 166 633150000 1094900000 2316100 1002800000 798240000 739550000 793930000 639540000 609280000 654920000 794640000 589500000 1021300000 28572000 1025600000 765080000 767400000 799830000 655740000 634500000 639000000 760820000 118 118 56 118 118 118 118 118 118 118 118 475220000000 245960000000 229260000000 8856 1417;2044;2007 8254 47077;47078;47079;47080;47081;47082;47083;47084;47085;47086;47087;47088;47089;47090;47091;47092;47093;47094;47095;47096;47097;47098;47099;47100;47101;47102;47103;47104;47105;47106;47107;47108;47109;47110;47111;47112;47113;47114;47115;47116;47117;47118;47119;47120;47121;47122;47123;47124;47125;47126;47127;47128;47129;47130;47131;47132;47133;47134;47135;47136;47137;47138;47139;47140;47141;47142;47143;47144;47145;47146;47147;47148;47149;47150;47151;47152;47153;47154;47155;47156;47157;47158;47159;47160;47161;47162;47163;47164;47165;47166;47167;47168;47169;47170;47171;47172;47173;47174;47175;47176;47177;47178;47179;47180;47181;47182;47183;47184;47185;47186;47187;47188;47189;47190;47191;47192;47193;47194;47195;47196;47197;47198;47199;47200;47201;47202;47203;47204;47205;47206;47207;47208;47209;47210;47211;47212;47213;47214;47215;47216;47217;47218;47219;47220;47221;47222;47223;47224;47225;47226;47227;47228;47229;47230;47231;47232;47233;47234;47235;47236;47237;47238;47239;47240;47241;47242;47243;47244;47245;47246;47247;47248;47249;47250;47251;47252;47253;47254;47255;47256;47257;47258;47259;47260;47261;47262;47263;47264;47265;47266;47267;47268;47269;47270;47271;47272;47273;47274;47275;47276;47277;47278;47279;47280;47281;47282;47283;47284;47285;47286;47287;47288;47289;47290;47291;47292;47293;47294;47295;47296;47297;47298;47299;47300;47301;47302;47303;47304;47305;47306;47307;47308;47309;47310;47311;47312;47313;47314 56989;56990;56991;56992;56993;56994;56995;56996;56997;56998;56999;57000;57001;57002;57003;57004;57005;57006;57007;57008;57009;57010;57011;57012;57013;57014;57015;57016;57017;57018;57019;57020;57021;57022;57023;57024;57025;57026;57027;57028;57029;57030;57031;57032;57033;57034;57035;57036;57037;57038;57039;57040;57041;57042;57043;57044;57045;57046;57047;57048;57049;57050;57051;57052;57053;57054;57055;57056;57057;57058;57059;57060;57061;57062;57063;57064;57065;57066;57067;57068;57069;57070;57071;57072;57073;57074;57075;57076;57077;57078;57079;57080;57081;57082;57083;57084;57085;57086;57087;57088;57089;57090;57091;57092;57093;57094;57095;57096;57097;57098;57099;57100;57101;57102;57103;57104;57105;57106;57107;57108;57109;57110;57111;57112;57113;57114;57115;57116;57117;57118;57119;57120;57121;57122;57123;57124;57125;57126;57127;57128;57129;57130;57131;57132;57133;57134;57135;57136;57137;57138;57139;57140;57141;57142;57143;57144;57145;57146;57147;57148;57149;57150;57151;57152;57153;57154;57155;57156;57157;57158;57159;57160;57161;57162;57163;57164;57165;57166;57167;57168;57169;57170;57171;57172;57173;57174;57175;57176;57177;57178;57179;57180;57181;57182;57183;57184;57185;57186;57187;57188;57189;57190;57191;57192;57193;57194;57195;57196;57197;57198;57199;57200;57201;57202;57203;57204;57205;57206;57207;57208;57209;57210;57211;57212;57213;57214;57215;57216;57217;57218;57219;57220;57221;57222;57223;57224;57225;57226;57227;57228;57229;57230;57231;57232;57233;57234;57235;57236;57237;57238;57239;57240;57241;57242;57243;57244;57245;57246;57247;57248;57249;57250;57251;57252;57253;57254;57255;57256;57257;57258;57259;57260;57261;57262;57263;57264;57265;57266;57267;57268;57269;57270;57271;57272;57273;57274;57275;57276;57277;57278;57279;57280;57281;57282;57283;57284;57285;57286;57287;57288;57289;57290;57291;57292;57293;57294;57295;57296;57297;57298;57299;57300;57301;57302;57303;57304;57305 57297 317 IHFRPELPAER Unmodified 1363.7361 0.73606817 757 P21397;P21397-2 MAOA Amine oxidase [flavin-containing] A yes no 0 0 0 1 By MS/MS By MS/MS 6.75 0.829 2 2 10 2 14 2 36.088 36.402 3;4 1.0028E-06 9631 20211116_3435_TMUAki_TMT10x_P_F7 130.56 108.82 5079000 7804700 191560 8860600 9881100 10457000 6362200 6424900 6271000 5874700 6981500 4730400 7286600 654960 8988500 9397000 10464000 6634600 6719400 6408900 5760200 6712800 27 27 20 27 27 27 27 27 27 27 27 4684900 7199900 171890 8149200 9471400 10052000 6018200 5825500 5675900 5325900 6398200 4363400 6721800 605340 8274900 9004800 10028000 6274400 6121300 5814900 5222100 6149700 25 25 19 25 25 25 25 25 25 25 25 394060 604810 19671 711370 409640 405100 344020 599390 595110 548770 583360 367040 564750 49621 713610 392220 435940 360160 598100 594020 538040 563110 2 2 1 2 2 2 2 2 2 2 2 799290000 712870000 86417000 8857 757 8255 47315;47316;47317;47318;47319;47320;47321;47322;47323;47324;47325;47326;47327;47328;47329;47330 57306;57307;57308;57309;57310;57311;57312;57313;57314;57315;57316;57317;57318;57319;57320;57321;57322;57323;57324;57325;57326;57327;57328;57329;57330;57331;57332;57333;57334;57335;57336 57321 31 IHGFTVNQVTSVPELFLTAVK Unmodified 2299.2576 0.25761826 1919 Q5JRX3;Q5JRX3-2 PITRM1 Presequence protease, mitochondrial yes no 0 0 0 0 By matching By MS/MS 4 0 2 1 1 79.124 79.113 3 5.2019E-14 26735 20211116_3442_TMUAki_TMT10x_S_F4 129.12 114.19 6330700 9950500 12810 9735200 7375600 6104900 9015000 4868900 4440100 5299000 8280000 5894300 9284000 515210 9892500 7111700 6415400 8917000 5025600 4853500 5157600 7868500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6330700 9950500 12810 9735200 7375600 6104900 9015000 4868900 4440100 5299000 8280000 5894300 9284000 515210 9892500 7111700 6415400 8917000 5025600 4853500 5157600 7868500 2 2 1 2 2 2 2 2 2 2 2 1252600000 488750000 763820000 8858 1919 8256 47331;47332 57337;57338 57337 2 IHGLLEAGR Unmodified 964.54541 0.54541385 154 O15020;O15020-2 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes no 0 0 0 0 By MS/MS 6 0 1 1 36 35.982 3 0.00081567 7861 20211116_3434_TMUAki_TMT10x_P_F6 88.37 61.24 145490 232060 18266 282770 251280 294460 193840 156480 144380 167210 175610 135600 216720 30567 285070 240600 296160 198090 166380 150150 162860 168440 1 1 1 1 1 1 1 1 1 1 1 145490 232060 18266 282770 251280 294460 193840 156480 144380 167210 175610 135600 216720 30567 285070 240600 296160 198090 166380 150150 162860 168440 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11217000 11217000 0 8859 154 8257 47333 57339 57339 1 IHGVGFK Unmodified 756.42826 0.42825883 1380 P62899;P62899-3;P62899-2 RPL31 60S ribosomal protein L31 yes no 0 0 0 0 By MS/MS By MS/MS 3 2.92 4 2 2 4 4 33.389 33.395 2;3 0.0013087 8612 20211116_3428_TMUAki_TMT10x_P_F1 118.06 73.445 8917000 14534000 29506 14321000 11917000 13601000 9641800 8989600 26500000 14459000 11136000 8302600 13561000 778420 14614000 11369000 13796000 10421000 9536500 25676000 13896000 11218000 7 7 4 7 7 7 7 7 7 7 7 4713300 7453300 20321 7467900 7612200 9547500 4782500 4613000 18268000 8837200 5605300 4388500 6954800 425860 7648500 7227400 9487200 5416600 5065600 17545000 8456800 5799200 3 3 2 3 3 3 3 3 3 3 3 4203700 7080800 9185.4 6853300 4305100 4053400 4859300 4376600 8231700 5622200 5530300 3914100 6606300 352560 6965700 4142000 4309300 5004400 4470800 8130900 5439600 5418500 4 4 2 4 4 4 4 4 4 4 4 1192400000 672420000 519980000 8860 1380 8258 47334;47335;47336;47337;47338;47339;47340;47341 57340;57341;57342;57343;57344;57345;57346 57340 7 IHHDVNELLSLLR Unmodified 1557.8627 0.86272524 2650 Q9BSJ2;Q9BSJ2-4 TUBGCP2 Gamma-tubulin complex component 2 yes no 0 0 0 0 By MS/MS By MS/MS 7.62 0.484 3 5 4 4 95.864 95.732 3 5.88E-12 28757 20211116_3436_TMUAki_TMT10x_P_F8 151.66 129.58 417130 670060 5127.6 547260 458570 587800 486330 449730 438100 471250 436640 388430 624780 31102 567580 440690 593210 490360 464870 447750 459360 421260 7 7 4 7 7 7 7 7 7 7 7 193900 299680 843.5 242780 183350 357990 220210 201080 213990 212720 199770 180550 279420 16714 253420 176780 354060 221250 212710 217470 207270 193150 2 2 2 2 2 2 2 2 2 2 2 223230 370390 4284.1 304490 275220 229810 266120 248650 224110 258530 236880 207880 345360 14388 314160 263920 239140 269110 252160 230280 252090 228110 5 5 2 5 5 5 5 5 5 5 5 17791000 10616000 7175000 8861 2650 8259 47342;47343;47344;47345;47346;47347;47348;47349 57347;57348;57349;57350;57351;57352;57353;57354;57355 57348 9 IHIDLPNEQAR Unmodified 1304.6837 0.68369824 1357 P62333 PSMC6 26S protease regulatory subunit 10B yes yes 0 0 0 0 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 43.503 43.535 3 1.5697E-05 11789 20211116_3431_TMUAki_TMT10x_P_F4 101.93 87.81 2691600 4123700 82665 4869900 5620200 4842100 3308200 2828200 2577500 2690200 4020500 2506800 3850600 282890 4915000 5335800 4889300 3453900 2973000 2705300 2633000 3833700 3 3 2 3 3 3 3 3 3 3 3 1969600 2916000 67529 3605700 4777500 4308600 2708000 2011000 1993700 2022200 2956200 1834400 2723500 207240 3640200 4533000 4294300 2833000 2160900 2093600 1974500 2821900 2 2 1 2 2 2 2 2 2 2 2 722010 1207700 15135 1264200 842700 533510 600180 817210 583840 667960 1064300 672370 1127100 75655 1274700 802840 594950 620970 812090 611720 658510 1011800 1 1 1 1 1 1 1 1 1 1 1 582810000 302060000 280750000 8862 1357 8260 47350;47351;47352;47353;47354 57356;57357;57358 57357 3 IHIFAQQNDQFQK Unmodified 1615.8107 0.81068967 1977 Q6IA86;Q6IA86-5;Q6IA86-4;Q6IA86-2;Q6IA86-3;Q6IA86-6 ELP2 Elongator complex protein 2 yes no 0 0 0 0 By MS/MS 8 0 1 1 50.157 50.243 3 2.9608E-06 14225 20211116_3436_TMUAki_TMT10x_P_F8 101.71 87.554 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8863 1977 8261 47355 57359 57359 1 IHIPEPDLR Unmodified 1088.5978 0.59784335 1459 P85037;P85037-2 FOXK1 Forkhead box protein K1 yes no 0 0 0 0 By MS/MS By MS/MS 4 0.632 1 3 1 2 3 45.519 45.677 3 0.00099507 13033 20211116_3442_TMUAki_TMT10x_S_F4 82.645 65.681 1191000 2062500 1072.3 2036100 2457600 2206500 1394000 1671000 1666700 1377200 1762100 1108900 1924500 110600 2081600 2329400 2225300 1478000 1717200 1687000 1357200 1696900 2 2 1 2 2 2 2 2 2 2 2 721670 1239600 0 1235800 2015800 1817800 1025600 954090 965190 801210 1079600 671890 1156700 71080 1269700 1907500 1796600 1090200 1009100 988610 788800 1037900 1 1 0 1 1 1 1 1 1 1 1 469310 822920 1072.3 800330 441810 388630 368380 716910 701480 576010 682540 436980 767790 39523 811910 421840 428680 387810 708120 698390 568370 659010 1 1 1 1 1 1 1 1 1 1 1 289340000 123510000 165830000 8864 1459 8262 47356;47357;47358;47359;47360 57360;57361;57362;57363 57362 4 IHIPFISK Unmodified 953.56984 0.56983769 1300 P61201;P61201-2 COPS2 COP9 signalosome complex subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 61.907 61.748 3 0.0011414 21969 20211116_3441_TMUAki_TMT10x_S_F3 98.997 98.997 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8865 1300 8263 47361;47362 57364;57365 57365 2 IHLMQNGKR Unmodified 1095.5971 0.59713184 759 P21579;Q8N9I0 SYT1;SYT2 Synaptotagmin-1;Synaptotagmin-2 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 36.082 35.846 3;4 0.030423 9762 20211116_3429_TMUAki_TMT10x_P_F2 50.878 20.624 2967000 4345500 22280 4636400 4110700 3727800 3104800 3093600 2621900 2503100 3697400 2762700 4055900 280020 4695800 3917400 3839400 3187000 3159700 2726600 2469000 3533500 4 4 3 4 4 4 4 4 4 4 4 2058200 2912100 10231 3115900 3204600 2933400 2061900 2015200 1733400 1693300 2583700 1916400 2718100 193480 3161600 3044400 2979000 2141100 2085600 1808000 1667000 2466100 2 2 1 2 2 2 2 2 2 2 2 908770 1433400 12050 1520600 906150 794310 1042800 1078500 888490 809820 1113700 846240 1337800 86536 1534200 873020 860370 1045900 1074200 918630 801980 1067400 2 2 2 2 2 2 2 2 2 2 2 536800000 477800000 59010000 8866 759 8264 47363;47364;47365;47366 57366;57367;57368 57366 3 IHLPETVEQLR Unmodified 1333.7354 0.73539946 143 O14936;O14936-3;O14936-4;O14936-6;O14936-2 CASK Peripheral plasma membrane protein CASK yes no 0 0 0 0 By MS/MS 4 0 1 1 49.393 49.548 3 0.03784 14610 20211116_3442_TMUAki_TMT10x_S_F4 51.998 41.584 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8867 143 8265 47367 57369 57369 1 IHNADVTLR Unmodified 1037.5618 0.56179219 3234 Q9Y295 DRG1 Developmentally-regulated GTP-binding protein 1 yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 31.531 31.514 3 0.00025476 6976 20211116_3431_TMUAki_TMT10x_P_F4 114.97 86.272 907440 1254900 50360 1356300 1918600 1529200 1075300 965860 865730 1004600 1099300 845290 1171300 136330 1379100 1821500 1534500 1128300 1011600 898190 979530 1053200 2 2 2 2 2 2 2 2 2 2 2 907440 1254900 50360 1356300 1918600 1529200 1075300 965860 865730 1004600 1099300 845290 1171300 136330 1379100 1821500 1534500 1128300 1011600 898190 979530 1053200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 66054000 66054000 0 8868 3234 8266 47368;47369 57370;57371 57370 2 IHNFGLIQEK Unmodified 1197.6506 0.6506072 1115 P49748;P49748-2;P49748-3 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 47.068 47.596 3 9.7148E-05 14913 20211116_3446_TMUAki_TMT10x_S_F7 115.78 81.906 6709300 11276000 11720 11690000 10016000 9496800 6762700 11174000 10418000 9063000 10221000 6246900 10523000 583730 11864000 9520300 9847700 7142900 11213000 10431000 8938400 9865700 3 3 1 3 3 3 3 3 3 3 3 2495600 4047900 0 3913100 5687700 5934000 3280300 3765900 3803800 3077800 3580300 2323400 3776700 225420 4031700 5391400 5871800 3469400 3917800 3838900 3034300 3460700 1 1 0 1 1 1 1 1 1 1 1 4213800 7228100 11720 7776700 4327800 3562800 3482400 7408200 6613800 5985200 6640400 3923500 6746600 358310 7831800 4128900 3975900 3673500 7295500 6592400 5904100 6404900 2 2 1 2 2 2 2 2 2 2 2 330070000 260430000 69645000 8869 1115 8267 47370;47371;47372 57372;57373;57374;57375 57373 4 IHNLALNCCTQLADLYR Unmodified 2074.0088 0.0088139074 1214 P53992;P53992-2 SEC24C Protein transport protein Sec24C yes no 0 0 0 0 By MS/MS 1 0 1 1 60.087 59.794 3 7.825E-11 20101 20211116_3439_TMUAki_TMT10x_S_F1 121.82 101.08 4189700 7089400 64444 7074800 7450300 4894400 3698200 8194500 6398600 6362600 6538400 3901100 6615100 398350 7185800 7049700 5194700 4031000 8110200 6396300 6289500 6303000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4189700 7089400 64444 7074800 7450300 4894400 3698200 8194500 6398600 6362600 6538400 3901100 6615100 398350 7185800 7049700 5194700 4031000 8110200 6396300 6289500 6303000 2 2 1 2 2 2 2 2 2 2 2 504540000 0 504540000 8870 1214 8268 47373 57376;57377 57376 2 IHPELLAK Unmodified 919.5491 0.54910224 3051 Q9P0M6 H2AFY2 Core histone macro-H2A.2 yes yes 0 0 0 0 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 42.941 43.165 3 0.00030178 10653 20211116_3434_TMUAki_TMT10x_P_F6 133.55 95.99 6855200 10799000 40040 10846000 9880800 10182000 8555400 8515600 8339200 7864100 9159900 6382900 10076000 614630 11051000 9441100 10376000 8740700 8722700 8522300 7707400 8810800 5 5 2 5 5 5 5 5 5 5 5 3070400 4666400 0 4686500 5473300 6469700 3865400 3860600 3702500 3425000 4026900 2858800 4354300 279170 4806300 5207100 6422200 3999800 4043800 3785300 3363000 3874500 2 2 0 2 2 2 2 2 2 2 2 3784800 6132200 40040 6159000 4407500 3712600 4690100 4655000 4636700 4439100 5133000 3524100 5722100 335460 6244700 4234000 3954200 4740900 4678800 4737000 4344400 4936300 3 3 2 3 3 3 3 3 3 3 3 1109800000 602490000 507350000 8871 3051 8269 47374;47375;47376;47377;47378 57378;57379;57380;57381;57382;57383 57379 6 IHPMAYQLQLQAASNFK Oxidation (M) 1974.9986 0.9985668 1412 P67870 CSNK2B Casein kinase II subunit beta yes yes 0 0 1 0 By MS/MS By MS/MS 2.43 0.728 1 2 4 5 2 57.606 57.378 3;4 1.2226E-11 20150 20211116_3441_TMUAki_TMT10x_S_F3 138.28 120.14 36022000 59808000 703890 60507000 48276000 75418000 43323000 45102000 43503000 43538000 46335000 33543000 55810000 3499700 61900000 46187000 75230000 44209000 47340000 44350000 42586000 44610000 9 9 6 9 9 9 9 9 9 9 9 33245000 54174000 703890 56183000 44953000 72641000 40622000 40506000 39359000 39759000 42158000 30957000 50557000 3298300 57421000 43018000 72264000 41392000 42783000 40196000 38862000 40581000 8 8 6 8 8 8 8 8 8 8 8 2777100 5634500 0 4323200 3323300 2777800 2701300 4596000 4143700 3779100 4177000 2585500 5252700 201340 4479900 3168500 2966100 2817200 4556700 4153600 3724500 4028300 1 1 0 1 1 1 1 1 1 1 1 5143300000 4391900000 751350000 8872 1412 8270 47379;47380;47381;47382;47383;47384;47385 57384;57385;57386;57387;57388;57389;57390;57391;57392;57393 57392 1897 10 IHPMAYQLQLQAASNFK Unmodified 1959.0037 0.003652175 1412 P67870 CSNK2B Casein kinase II subunit beta yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 62.289 62.276 3 1.0071E-07 19909 20211116_3442_TMUAki_TMT10x_S_F4 108.09 88.509 14261000 23787000 247440 25471000 16934000 20666000 17760000 9025200 8503800 10605000 16022000 13281000 22202000 1450400 25794000 16272000 21088000 17685000 9811000 9323000 10292000 15224000 4 4 4 4 4 4 4 4 4 4 4 11030000 18466000 209900 19672000 13067000 18183000 14217000 7129500 6974800 8655800 12313000 10271000 17235000 1138600 19961000 12571000 18367000 14137000 7852400 7602000 8390900 11713000 3 3 3 3 3 3 3 3 3 3 3 3231700 5320600 37546 5799300 3866200 2483000 3542700 1895700 1529000 1949300 3709500 3009300 4966400 311810 5832800 3701200 2720900 3548100 1958700 1721000 1901600 3511000 1 1 1 1 1 1 1 1 1 1 1 1653700000 1155200000 498420000 8873 1412 8270 47386;47387 57394;57395;57396;57397 57397 4 IHPQTIIAGWR Unmodified 1290.7197 0.71968982 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 50.431 50.39 3 5.7267E-12 17299 20211116_3441_TMUAki_TMT10x_S_F3 176.48 145.41 5691200 8886500 60950 9971800 10250000 8895700 7012300 7116900 7964200 5862200 7973900 5299200 8296200 546470 10080000 9747300 9088700 7311600 7288200 8060900 5777100 7691800 5 5 3 5 5 5 5 5 5 5 5 3491800 5115700 52408 5687100 7887400 7325700 5102100 3895800 4000400 3310600 4641800 3251300 4775600 357980 5785900 7493200 7284800 5286800 4116600 4140700 3257400 4457900 3 3 2 3 3 3 3 3 3 3 3 2199400 3770900 8542.2 4284700 2362500 1570000 1910200 3221100 3963800 2551700 3332100 2047800 3520600 188490 4294200 2254100 1803900 2024800 3171600 3920200 2519700 3233900 2 2 1 2 2 2 2 2 2 2 2 1622800000 903900000 718910000 8874 1429 8271 47388;47389;47390;47391;47392;47393 57398;57399;57400;57401;57402;57403;57404 57403 7 IHPTSVISGYR Unmodified 1228.6564 0.65642086 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 By MS/MS By MS/MS 2.86 1.64 2 2 1 2 4 3 37.05 37.013 3 1.417E-06 8864 20211116_3428_TMUAki_TMT10x_P_F1 121.36 98.289 5790100 8163800 28122 9479100 11567000 10627000 5956600 5540200 6162100 5352600 6909000 5390600 7622600 493810 9594500 10946000 10641000 6341700 5884000 6286400 5235400 6641700 7 7 3 7 7 7 7 7 7 7 7 5047300 7108900 26889 8114100 10931000 10126000 5324600 4846900 5340300 4670800 6043500 4699100 6637100 444460 8236800 10337000 10073000 5694600 5189100 5457100 4569000 5808200 5 5 2 5 5 5 5 5 5 5 5 742720 1054900 1232.6 1365000 636230 500730 631980 693350 821800 681880 865480 691460 985490 49352 1357700 609240 567750 647140 694890 829280 666430 833550 2 2 1 2 2 2 2 2 2 2 2 483110000 367290000 115820000 8875 712 8272 47394;47395;47396;47397;47398;47399;47400 57405;57406;57407;57408;57409;57410;57411;57412 57405 8 IHPVDKLTIQGLK Unmodified 1460.8715 0.87149901 2605 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 1 By MS/MS 2 0 1 1 52.352 52.098 4 4.0829E-05 16465 20211116_3429_TMUAki_TMT10x_P_F2 99.834 82.892 1503900 2419000 37877 2767000 3514600 3720200 2164900 2013800 1804300 1864900 2301100 1400600 2258500 188150 2812400 3338300 3692800 2255300 2129200 1869000 1827500 2204400 1 1 1 1 1 1 1 1 1 1 1 1503900 2419000 37877 2767000 3514600 3720200 2164900 2013800 1804300 1864900 2301100 1400600 2258500 188150 2812400 3338300 3692800 2255300 2129200 1869000 1827500 2204400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 245740000 245740000 0 8876 2605 8273 47401 57413 57413 1 IHPVSTMVK Oxidation (M) 1026.5532 0.55320134 531 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 1 0 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 32.716 32.652 3 0.0005043 6975 20211116_3428_TMUAki_TMT10x_P_F1 99.013 65.067 1942100 3276800 20462 3319400 2967200 2625700 2093400 1486100 1540800 1419600 2365300 1808400 3057800 194440 3372900 2824400 2692000 2152000 1566500 1620900 1389200 2256200 4 4 4 4 4 4 4 4 4 4 4 1087200 1789000 16443 1799800 2157100 2017700 1338600 900050 935310 863770 1325700 1012400 1669400 120450 1838600 2048800 2016900 1388100 970430 983020 845100 1266700 2 2 2 2 2 2 2 2 2 2 2 854840 1487800 4018.8 1519600 810110 607980 754820 586060 605450 555840 1039700 795970 1388400 73991 1534300 775630 675110 763910 596070 637890 544110 989490 2 2 2 2 2 2 2 2 2 2 2 220180000 146640000 73544000 8877 531 8274 47402;47403;47404 57414;57415;57416;57417 57414 452 4 IHPVSTMVK Unmodified 1010.5583 0.55828672 531 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 23.8 23.953 3 0.048609 4188 20211116_3436_TMUAki_TMT10x_P_F8 41.724 21.143 4014900 6711900 128520 7200300 5313100 4519800 3872600 3919900 3547200 3495800 4969900 3739200 6264700 470820 7270900 5066000 4756400 3993400 4003100 3673400 3431700 4750200 2 2 2 2 2 2 2 2 2 2 2 1607000 2366500 58182 2580700 2987000 2737100 1686000 1267600 1343500 1323500 1737000 1496700 2209000 206780 2619900 2834900 2745700 1767600 1364700 1395700 1290300 1663400 1 1 1 1 1 1 1 1 1 1 1 2407900 4345300 70340 4619600 2326100 1782800 2186700 2652300 2203800 2172300 3232900 2242500 4055700 264040 4651000 2231200 2010700 2225900 2638400 2277700 2141300 3086800 1 1 1 1 1 1 1 1 1 1 1 701190000 276660000 424530000 8878 531 8274 47405;47406 57418;57419 57418 2 IHQETFGK Unmodified 958.48723 0.48723027 1798 Q15393;Q15393-2 SF3B3 Splicing factor 3B subunit 3 yes no 0 0 0 0 By MS/MS 5 0 1 1 23.927 24.009 3 0.034112 4266 20211116_3444_TMUAki_TMT10x_S_F5 50.04 25.265 141080 256000 328.54 249290 165700 145770 200340 117760 125580 110310 168350 131360 238850 12348 253240 159780 154260 199090 120920 132550 108040 161080 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 141080 256000 328.54 249290 165700 145770 200340 117760 125580 110310 168350 131360 238850 12348 253240 159780 154260 199090 120920 132550 108040 161080 1 1 1 1 1 1 1 1 1 1 1 34725000 0 34725000 8879 1798 8275 47407 57420 57420 1 IHQHILPQGQGMLSGIGR Oxidation (M) 1957.0316 0.03159826 2300 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 yes yes 0 0 1 0 By MS/MS 2 0 1 1 38.729 38.48 4 8.8674E-07 10829 20211116_3429_TMUAki_TMT10x_P_F2 100.35 84.966 408370 650690 1395.4 678960 801290 789570 490280 453710 529010 398350 615810 380250 607270 40660 692310 760580 789990 514780 476600 539560 391330 591360 1 1 1 1 1 1 1 1 1 1 1 408370 650690 1395.4 678960 801290 789570 490280 453710 529010 398350 615810 380250 607270 40660 692310 760580 789990 514780 476600 539560 391330 591360 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 387730000 387730000 0 8880 2300 8276 47408 57421 57421 2663 1 IHQIGPGMVQQIQSVCMECQGHGER 2 Oxidation (M) 2910.2993 0.29933498 889 P31689;P31689-2 DNAJA1 DnaJ homolog subfamily A member 1 yes no 0 0 2 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 34.644 34.735 4 1.1254E-22 8730 20211116_3444_TMUAki_TMT10x_S_F5 144.43 136.44 201100 298480 3842.5 370170 243410 245520 159240 272300 290580 248430 268590 187250 278780 15631 370710 231330 258410 169990 274790 289080 243610 259780 3 3 1 3 3 3 3 3 3 3 3 72881 108560 0 139910 140790 143590 76405 67739 62321 66461 84091 67837 101420 4225 140570 133190 144350 80431 72662 64789 64962 80446 1 1 0 1 1 1 1 1 1 1 1 128210 189920 3842.5 230260 102630 101930 82832 204570 228260 181970 184500 119410 177370 11406 230130 98140 114060 89557 202130 224290 178650 179330 2 2 1 2 2 2 2 2 2 2 2 595400000 327570000 267830000 8881 889 8277 47409;47410;47411;47412 57422;57423;57424 57423 1079;1080 3 IHQIGPGMVQQIQSVCMECQGHGER Oxidation (M) 2894.3044 0.30442036 889 P31689;P31689-2 DNAJA1 DnaJ homolog subfamily A member 1 yes no 0 0 1 0 By MS/MS By MS/MS 7.17 0.687 1 3 2 4 2 46.018 46.317 4 1.9262E-24 12122 20211116_3435_TMUAki_TMT10x_P_F7 160.2 153.4 5596400 9128800 42809 9896400 9110600 10486000 7042200 6811000 6454300 6215600 7490900 5210300 8521000 460980 10051000 8680300 10563000 7233200 7092600 6628600 6095000 7194100 8 8 4 8 8 8 8 8 8 8 8 4938900 8012800 29026 8726400 8447100 9931900 6545200 5655600 5509900 5299600 6496600 4598100 7479400 393540 8869900 8047500 9947500 6706500 5955400 5685700 5190600 6236500 7 7 3 7 7 7 7 7 7 7 7 657430 1116100 13782 1170000 663510 553800 497000 1155400 944340 915990 994340 612230 1041600 67435 1180600 632850 615700 526680 1137200 942900 904470 957650 1 1 1 1 1 1 1 1 1 1 1 4335900000 2872800000 1463200000 8882 889 8277 47413;47414;47415;47416;47417;47418 57425;57426;57427;57428;57429;57430;57431;57432 57425 1079;1080 8 IHQIGPGMVQQIQSVCMECQGHGER Unmodified 2878.3095 0.30950573 889 P31689;P31689-2 DNAJA1 DnaJ homolog subfamily A member 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 50.985 51.273 4 3.637E-60 14607 20211116_3436_TMUAki_TMT10x_P_F8 220.86 217.93 8971000 16313000 263550 16218000 12188000 15626000 10179000 12987000 11318000 10034000 12925000 8354700 15221000 859680 16543000 11651000 15896000 10466000 13249000 11522000 9921200 12418000 8 8 4 8 8 8 8 8 8 8 8 5706000 9865100 256520 10493000 8767800 12747000 7091600 8622600 7446600 6850500 8797100 5314700 9207600 685710 10694000 8379800 12755000 7292000 8922000 7608000 6763500 8444500 5 5 3 5 5 5 5 5 5 5 5 3265000 6447800 7030.3 5724900 3420400 2878700 3087700 4364400 3871800 3183400 4127600 3040100 6013800 173970 5848800 3271600 3141600 3173700 4327100 3913700 3157700 3973800 3 3 1 3 3 3 3 3 3 3 3 4673200000 2361500000 2311700000 8883 889 8277 47419;47420;47421;47422 57433;57434;57435;57436;57437;57438;57439;57440 57435 8 IHSLPPEGK Unmodified 976.53418 0.53418046 603 P10176 COX8A Cytochrome c oxidase subunit 8A, mitochondrial yes yes 0 0 0 0 By MS/MS 5 0 1 1 33.22 33.398 3 0.004865 6763 20211116_3444_TMUAki_TMT10x_S_F5 64.654 41.824 165690 277480 8554 309110 177590 132280 184450 112590 119640 125790 209740 154340 259040 21875 310470 170970 145230 184730 115860 127750 122310 199540 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 165690 277480 8554 309110 177590 132280 184450 112590 119640 125790 209740 154340 259040 21875 310470 170970 145230 184730 115860 127750 122310 199540 1 1 1 1 1 1 1 1 1 1 1 3256400 0 3256400 8884 603 8278 47423 57441 57441 1 IHTEPQLSAALEYVR Unmodified 1725.905 0.90498399 1065 P47897 QARS Glutamine--tRNA ligase yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 56.547 56.68 3 7.4929E-08 16575 20211116_3445_TMUAki_TMT10x_S_F6 105.99 81.056 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8885 1065 8279 47424;47425 57442;57443 57443 2 IHTLELK Unmodified 852.5069 0.50690308 2181 Q8N163;Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 6.75 0.433 1 3 1 3 40.246 40.409 3 0.0024487 9973 20211116_3445_TMUAki_TMT10x_S_F6 102.77 23.322 1876700 1137900 0 1279800 725140 586950 708340 873950 837950 816830 970300 1747000 1062300 88756 1285200 691580 647130 723390 872380 851500 800110 931910 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1876700 1137900 0 1279800 725140 586950 708340 873950 837950 816830 970300 1747000 1062300 88756 1285200 691580 647130 723390 872380 851500 800110 931910 1 1 0 1 1 1 1 1 1 1 1 87443000 0 87443000 8886 2181 8280 47426;47427;47428;47429 57444;57445;57446;57447 57445 4 IHTLELKLEESHNR Unmodified 1717.9111 0.911132 2181 Q8N163;Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 1 By matching By MS/MS 5.5 0.5 1 1 1 1 43.319 43.454 4 2.511E-06 11253 20211116_3445_TMUAki_TMT10x_S_F6 112.72 62.161 1494300 2379700 24241 2586100 1688400 1230400 1313700 2030300 1924100 1666200 2024300 1391500 2221300 149200 2603400 1611000 1355100 1371000 2013000 1934300 1642300 1949700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1494300 2379700 24241 2586100 1688400 1230400 1313700 2030300 1924100 1666200 2024300 1391500 2221300 149200 2603400 1611000 1355100 1371000 2013000 1934300 1642300 1949700 2 2 2 2 2 2 2 2 2 2 2 349230000 101130000 248110000 8887 2181 8281 47430;47431 57448;57449 57448 2 IHVELSEKGEATQK Unmodified 1567.8206 0.82058566 1768 Q15075 EEA1 Early endosome antigen 1 yes yes 0 0 0 1 By MS/MS 5.5 0.5 1 1 2 38.279 38.434 4 0.000198 8892 20211116_3444_TMUAki_TMT10x_S_F5 85.837 66.514 171770 305630 17477 323540 168880 163600 154340 294330 273260 216030 274170 160060 285260 30488 326400 162620 179470 161000 290310 272830 214210 264460 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 171770 305630 17477 323540 168880 163600 154340 294330 273260 216030 274170 160060 285260 30488 326400 162620 179470 161000 290310 272830 214210 264460 1 1 1 1 1 1 1 1 1 1 1 53404000 0 53404000 8888 1768 8282 47432;47433 57450 57450 1 IHVFYIDYGNR Unmodified 1395.6935 0.69353465 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.88 3.22 3 2 3 5 3 54.977 54.876 2;3 3.1478E-11 15969 20211116_3428_TMUAki_TMT10x_P_F1 161.17 152.47 12441000 20275000 219120 19901000 18339000 23045000 14936000 17915000 17090000 15015000 17469000 11585000 18917000 1095400 20376000 17507000 23168000 15395000 18387000 17305000 14784000 16840000 7 7 3 7 7 7 7 7 7 7 7 8366100 13206000 93251 12894000 13876000 18874000 10716000 11813000 11326000 9869100 11585000 7789800 12321000 648500 13265000 13227000 18700000 11054000 12309000 11505000 9718800 11168000 4 4 2 4 4 4 4 4 4 4 4 4074900 7069200 125860 7007900 4462500 4171200 4220000 6102200 5763600 5145800 5884200 3794900 6596100 446880 7111100 4279500 4467700 4341000 6078200 5800200 5065100 5672500 3 3 1 3 3 3 3 3 3 3 3 5567800000 3564700000 2003100000 8889 2048 8283 47434;47435;47436;47437;47438;47439;47440;47441 57451;57452;57453;57454;57455;57456;57457;57458 57451 8 IHVFYIDYGNREVLPSTR Unmodified 2178.1222 0.12218741 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 1 By matching By MS/MS 1.67 0.471 1 2 2 1 56.562 56.407 4 2.0394E-17 16937 20211116_3440_TMUAki_TMT10x_S_F2 152.32 139.18 2408800 4725200 182110 4817100 2969800 2696500 2740300 3403000 3448600 3474300 3890800 2244200 4409500 377290 4876100 2852800 2893700 2813500 3426400 3493000 3390300 3739600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2408800 4725200 182110 4817100 2969800 2696500 2740300 3403000 3448600 3474300 3890800 2244200 4409500 377290 4876100 2852800 2893700 2813500 3426400 3493000 3390300 3739600 1 1 1 1 1 1 1 1 1 1 1 2776800000 1959100000 817730000 8890 2048 8284 47442;47443;47444 57459 57459 1 IHVILAQK Unmodified 920.58074 0.58073672 2663 Q9BTE3;Q9BTE3-2;Q9BTE3-3 MCMBP Mini-chromosome maintenance complex-binding protein yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 43.164 43.024 3 0.0020681 14329 20211116_3441_TMUAki_TMT10x_S_F3 94.887 76.901 842040 1434700 29524 1437500 1297900 1207000 891890 1142000 1119800 938910 1249100 784240 1338700 103710 1462800 1236100 1242400 932970 1158300 1133800 925360 1200900 2 2 2 2 2 2 2 2 2 2 2 338040 565100 12443 527920 743070 779970 442520 426170 447230 366760 489480 314840 527160 45295 544960 705690 771090 464730 449380 456270 360640 470870 1 1 1 1 1 1 1 1 1 1 1 503990 869550 17081 909540 554860 427040 449370 715830 672550 572160 759580 469400 811540 58416 917850 530410 471290 468240 708940 677530 564720 730050 1 1 1 1 1 1 1 1 1 1 1 80098000 31874000 48224000 8891 2663 8285 47445;47446 57460;57461 57461 2 IHVLEAQDLIAK Unmodified 1348.7715 0.77145062 2652 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 By matching By MS/MS 6 0 2 1 1 58.72 58.769 3 0.013189 17463 20211116_3445_TMUAki_TMT10x_S_F6 56.205 39.263 5486000 9453300 61822 9915100 5828100 5831600 5472000 7501900 7234100 7060900 8324300 5108500 8822700 517240 10021000 5583100 6230300 5623700 7529900 7321100 6914300 7996400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5486000 9453300 61822 9915100 5828100 5831600 5472000 7501900 7234100 7060900 8324300 5108500 8822700 517240 10021000 5583100 6230300 5623700 7529900 7321100 6914300 7996400 1 1 1 1 1 1 1 1 1 1 1 609900000 283670000 326230000 8892 2652 8286 47447;47448 57462 57462 1 IHVSDQELQSANASVDDSRLEELK Unmodified 2682.3097 0.30966642 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 55.342 55.43 4 3.7405E-22 16080 20211116_3445_TMUAki_TMT10x_S_F6 143.91 134.35 5888900 10529000 230680 12715000 10485000 11350000 7045400 8634800 8872900 8659900 9159200 5484900 9832600 767600 12796000 9981300 11586000 7382900 8917100 8956800 8456700 8826700 2 2 2 2 2 2 2 2 2 2 2 3162200 5500400 176170 6585700 7793300 8884300 5125400 4747600 4902200 4351800 4842600 2945600 5136500 491210 6676200 7416200 8816000 5331500 5024000 4994800 4266500 4673300 1 1 1 1 1 1 1 1 1 1 1 2726800 5028400 54517 6128800 2692000 2465400 1920000 3887200 3970700 4308200 4316600 2539300 4696100 276390 6119900 2565100 2769500 2051400 3893100 3962000 4190200 4153400 1 1 1 1 1 1 1 1 1 1 1 836050000 486060000 349990000 8893 769 8287 47449;47450 57463;57464 57464 2 IHVYGYSMAYGPAQHAISTEK Oxidation (M) 2338.1052 0.10521671 2936 Q9NRX4 PHPT1 14 kDa phosphohistidine phosphatase yes yes 0 0 1 0 By MS/MS 8 0 1 1 45.823 45.959 4 5.1544E-27 12441 20211116_3436_TMUAki_TMT10x_P_F8 176.85 135.44 4243000 8095800 168960 8208900 8757900 13334000 6211200 6803900 6434000 6984000 5494600 3951900 7554700 572470 8443100 8343700 13121000 6440400 7252700 6502400 6813500 5329600 2 2 2 2 2 2 2 2 2 2 2 4243000 8095800 168960 8208900 8757900 13334000 6211200 6803900 6434000 6984000 5494600 3951900 7554700 572470 8443100 8343700 13121000 6440400 7252700 6502400 6813500 5329600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 499840000 499840000 0 8894 2936 8288 47451 57465;57466 57466 3029 2 IHYIGQNEPELLVAHAYTR Unmodified 2223.1437 0.14365113 873 P30519;P30519-2 HMOX2 Heme oxygenase 2 yes no 0 0 0 0 By MS/MS By MS/MS 6 0.816 1 1 1 2 1 52.424 52.691 4 1.0261E-12 16885 20211116_3446_TMUAki_TMT10x_S_F7 136.43 123.58 6693400 11054000 124060 11912000 10231000 12452000 8322200 9749600 9775200 8726000 9887600 6233200 10318000 720110 12100000 9769800 12591000 8586400 10018000 9885000 8564400 9534800 3 3 3 3 3 3 3 3 3 3 3 4247800 6803700 102090 7232700 7412800 10077000 5714600 6165000 6364100 5898600 6176700 3955900 6350200 491650 7390800 7071200 10003000 5905400 6457600 6439300 5771900 5964300 2 2 2 2 2 2 2 2 2 2 2 2445600 4250300 21971 4679300 2818600 2374200 2607600 3584600 3411000 2827400 3710900 2277300 3967600 228460 4708900 2698600 2588100 2680900 3560800 3445600 2792600 3570500 1 1 1 1 1 1 1 1 1 1 1 2474800000 1267400000 1207500000 8895 873 8289 47452;47453;47454 57467;57468;57469 57469 3 IHYLDTTTLIEPAPR Unmodified 1738.9254 0.92538508 1046 P46109 CRKL Crk-like protein yes yes 0 0 0 0 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 56.167 56.377 3 8.9781E-10 17195 20211116_3433_TMUAki_TMT10x_P_F5 107.46 85.144 13477000 23743000 99673 24509000 17469000 18335000 14739000 18445000 18647000 16809000 19068000 12547000 22158000 1045200 24857000 16673000 19062000 15214000 18699000 18814000 16484000 18381000 4 4 2 4 4 4 4 4 4 4 4 3607100 6053600 0 6439100 6759300 9004500 5504300 4711600 5320500 5059900 5307100 3357500 5650100 209610 6580000 6440900 8918500 5643200 5017500 5420300 4927400 5119900 1 1 0 1 1 1 1 1 1 1 1 9869600 17689000 99673 18070000 10709000 9330500 9235000 13733000 13326000 11749000 13761000 9189600 16507000 835610 18277000 10232000 10143000 9571200 13681000 13394000 11557000 13261000 3 3 2 3 3 3 3 3 3 3 3 3826000000 1390500000 2435500000 8896 1046 8290 47455;47456;47457;47458;47459 57470;57471;57472;57473;57474 57470 5 IHYLDTTTLIEPVSR Unmodified 1756.9359 0.93594977 1044;1045 P46108;P46108-2 CRK Adapter molecule crk no no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 58.712 59.148 3 7.8267E-10 17160 20211116_3434_TMUAki_TMT10x_P_F6 131.06 108.15 12776000 22247000 572570 22533000 17564000 25569000 16970000 16844000 15509000 15397000 18169000 11900000 20760000 1659900 23012000 16861000 25664000 17199000 17523000 15936000 15097000 17444000 4 4 4 4 4 4 4 4 4 4 4 9675200 17345000 443770 17269000 14501000 22353000 13873000 13370000 12227000 12093000 13964000 9011900 16184000 1283300 17699000 13916000 22257000 14054000 14009000 12572000 11863000 13417000 3 3 3 3 3 3 3 3 3 3 3 3100400 4901600 128800 5263400 3062800 3215100 3096600 3473800 3282200 3304300 4205000 2887700 4575100 376550 5313300 2945400 3407500 3145000 3513800 3363700 3234200 4027800 1 1 1 1 1 1 1 1 1 1 1 1822800000 1193500000 629270000 8897 1044;1045 8291 47460;47461;47462;47463 57475;57476;57477;57478;57479 57476 5 IIAEGANGPTTPEADK Unmodified 1582.7839 0.7838658 463 P00367;P00367-3;P00367-2;P49448 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 0 0 0 0 By MS/MS 3 0 1 1 46.233 45.888 3 0.099485 15449 20211116_3441_TMUAki_TMT10x_S_F3 30.536 10.155 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8898 463 8292 47464 57480 57480 1 IIAEGANGPTTPEADKIFLER Unmodified 2241.1641 0.1641118 463 P00367;P00367-3;P00367-2;P49448 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 4.71 1.03 1 2 2 2 3 4 63.555 63.557 3 3.8947E-07 19917 20211116_3431_TMUAki_TMT10x_P_F4 85.248 76.205 24720000 46187000 549780 40495000 31900000 50328000 34042000 42304000 42586000 42308000 37238000 23021000 43076000 2662400 41861000 30675000 50484000 34683000 43417000 42761000 41320000 36088000 6 6 6 6 6 6 6 6 6 6 6 12195000 22638000 310040 19580000 14641000 31234000 18094000 20667000 20585000 20486000 16679000 11357000 21112000 1334300 20365000 14144000 30863000 18250000 21541000 20694000 20015000 16210000 3 3 3 3 3 3 3 3 3 3 3 12525000 23550000 239730 20915000 17260000 19094000 15948000 21637000 22001000 21822000 20560000 11664000 21965000 1328100 21496000 16531000 19621000 16433000 21876000 22066000 21305000 19878000 3 3 3 3 3 3 3 3 3 3 3 2520200000 1313700000 1206600000 8899 463 8293 47465;47466;47467;47468;47469;47470;47471 57481;57482;57483;57484;57485;57486;57487;57488 57482 8 IIAFVGSPVEDNEK Unmodified 1516.7773 0.77732386 1232 P55036;P55036-2 PSMD4 26S proteasome non-ATPase regulatory subunit 4 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 68.013 68.042 3 3.4807E-14 21805 20211116_3431_TMUAki_TMT10x_P_F4 136.01 114.46 7592400 13753000 307010 14967000 8890600 7675700 8239000 7176200 7092300 7698300 9761700 7071500 12838000 933770 15074000 8526900 8258000 8355700 7337100 7360100 7497100 9334100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7592400 13753000 307010 14967000 8890600 7675700 8239000 7176200 7092300 7698300 9761700 7071500 12838000 933770 15074000 8526900 8258000 8355700 7337100 7360100 7497100 9334100 2 2 2 2 2 2 2 2 2 2 2 530080000 0 530080000 8900 1232 8294 47472;47473;47474;47475 57489;57490;57491;57492;57493 57489 5 IIAFVGSPVEDNEKDLVK Unmodified 1972.0517 0.051707805 1232 P55036;P55036-2 PSMD4 26S proteasome non-ATPase regulatory subunit 4 yes no 0 0 0 1 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 70.425 70.372 3 3.7952E-17 21837 20211116_3434_TMUAki_TMT10x_P_F6 142.39 98.592 3757000 7067400 104060 4716000 7059600 16874000 9025200 11692000 10748000 10669000 8768700 3498900 6585900 454710 5158900 6824800 16323000 9105300 12118000 10789000 10462000 8520100 2 2 2 2 2 2 2 2 2 2 2 3757000 7067400 104060 4716000 7059600 16874000 9025200 11692000 10748000 10669000 8768700 3498900 6585900 454710 5158900 6824800 16323000 9105300 12118000 10789000 10462000 8520100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 488880000 488880000 0 8901 1232 8295 47476;47477;47478 57494;57495;57496;57497 57494 4 IIAPANLERPVR Unmodified 1347.7987 0.79866842 3017 Q9NYB9;Q9NYB9-2;Q9NYB9-3;Q9NYB9-4 ABI2 Abl interactor 2 yes no 0 0 0 1 By MS/MS By MS/MS 4 3.29 2 1 2 2 3 42.807 42.816 3 1.7417E-06 11104 20211116_3428_TMUAki_TMT10x_P_F1 118.48 63.875 7762800 11853000 23107 14027000 12630000 11290000 7191700 9697100 10598000 9027100 10591000 7227400 11069000 645790 14115000 11969000 11634000 7684700 9919700 10632000 8843900 10217000 5 5 2 5 5 5 5 5 5 5 5 4099800 5789200 20851 6650700 9363000 8479800 4326400 4660500 5085200 4266200 5108400 3817500 5405200 430650 6751300 8852200 8440000 4675300 4919400 5140900 4182900 4927200 2 2 1 2 2 2 2 2 2 2 2 3663000 6064100 2255.5 7376000 3267100 2810200 2865300 5036600 5512800 4760800 5482400 3410000 5663300 215140 7363800 3117200 3194500 3009400 5000300 5491400 4661100 5289600 3 3 1 3 3 3 3 3 3 3 3 628320000 400640000 227690000 8902 3017 8296 47479;47480;47481;47482;47483 57498;57499;57500;57501;57502;57503 57498 6 IIAPANMERPVR Unmodified 1365.7551 0.75508905 2174 Q8IZP0;Q8IZP0-3;Q8IZP0-2;Q8IZP0-10;Q8IZP0-8;Q8IZP0-7;Q8IZP0-4;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0-12 ABI1 Abl interactor 1 yes no 0 0 0 1 By matching By MS/MS 8 0 2 1 1 38.466 38.779 3 0.0031843 8985 20211116_3447_TMUAki_TMT10x_S_F8 66.486 44.706 291370 491970 19445 561650 326350 255980 279480 443240 442460 345430 472820 271440 459320 42769 563480 312920 283840 290980 438270 444080 341400 455170 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 291370 491970 19445 561650 326350 255980 279480 443240 442460 345430 472820 271440 459320 42769 563480 312920 283840 290980 438270 444080 341400 455170 1 1 1 1 1 1 1 1 1 1 1 26486000 14574000 11911000 8903 2174 8297 47484;47485 57504 57504 1 IIAPPER Unmodified 794.46504 0.46503826 1276;1406;1414;1911 P60709;P63261;P68133;P68032;P62736;P63267;P63267-2;Q562R1 ACTB;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2 no no 0 0 0 0 By MS/MS By MS/MS 4.5 2.14 2 2 2 3 2 4 1 2 8 10 34.859 34.955 2 0.001289 9733 20211116_3435_TMUAki_TMT10x_P_F7 146.01 56.104 48347000 76472000 82388 72331000 56732000 57025000 53819000 39090000 40182000 40337000 55832000 45010000 71341000 3349600 73854000 54273000 58634000 54321000 40686000 42030000 39344000 53375000 33 33 11 33 33 33 33 33 33 33 33 19507000 28979000 60944 27895000 28372000 33734000 21444000 17317000 18553000 17748000 22787000 18161000 27037000 1498400 28622000 27014000 33637000 22024000 18448000 19151000 17316000 21851000 10 10 4 10 10 10 10 10 10 10 10 28841000 47493000 21445 44436000 28360000 23291000 32375000 21773000 21629000 22589000 33045000 26850000 44305000 1851200 45232000 27259000 24998000 32297000 22238000 22879000 22028000 31524000 23 23 7 23 23 23 23 23 23 23 23 22923000000 14940000000 7982600000 8904 1276;1406;1414;1911 8298 47486;47487;47488;47489;47490;47491;47492;47493;47494;47495;47496;47497;47498;47499;47500;47501;47502;47503 57505;57506;57507;57508;57509;57510;57511;57512;57513;57514;57515;57516;57517;57518;57519;57520;57521;57522;57523;57524;57525;57526;57527;57528;57529;57530;57531;57532;57533;57534;57535;57536;57537 57512 33 IIAPPERK Unmodified 922.56 0.56000128 1276;1406;1414;1911 P60709;P63261;P68133;P68032;P62736;P63267;P63267-2;Q562R1 ACTB;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2 no no 0 0 0 1 By MS/MS By MS/MS 6.42 1.88 2 1 2 4 9 8 13 13 27.792 27.956 2;3 0.00067651 5217 20211116_3435_TMUAki_TMT10x_P_F7 126.41 95.338 154160000 251000000 1521700 246070000 163710000 212970000 131490000 104630000 112420000 110490000 170410000 143540000 234190000 12968000 250880000 156160000 216570000 134470000 112020000 117260000 107670000 162600000 18 18 13 18 18 18 18 18 18 18 18 92887000 146360000 644310 145510000 92572000 166030000 59405000 60252000 67005000 66084000 101820000 86490000 136570000 8092600 148820000 87954000 165500000 62227000 66773000 69068000 64301000 97142000 9 9 6 9 9 9 9 9 9 9 9 61276000 104640000 877430 100550000 71136000 46946000 72083000 44378000 45411000 44406000 68597000 57051000 97627000 4875100 102070000 68210000 51075000 72242000 45251000 48188000 43368000 65455000 9 9 7 9 9 9 9 9 9 9 9 13514000000 7286500000 6227100000 8905 1276;1406;1414;1911 8299 47504;47505;47506;47507;47508;47509;47510;47511;47512;47513;47514;47515;47516;47517;47518;47519;47520;47521;47522;47523;47524;47525;47526;47527;47528;47529 57538;57539;57540;57541;57542;57543;57544;57545;57546;57547;57548;57549;57550;57551;57552;57553;57554;57555;57556;57557;57558;57559;57560;57561 57543 24 IICILSHPIK Unmodified 1192.7002 0.70019993 884 P31150 GDI1 Rab GDP dissociation inhibitor alpha yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 60.884 60.883 3 1.8224E-05 19344 20211116_3442_TMUAki_TMT10x_S_F4 132.78 92.19 6490700 11607000 54880 11920000 12157000 11389000 7174600 9376200 6571700 7876200 9666500 6043600 10832000 631080 12131000 11533000 11590000 7519400 9589700 6821800 7754100 9229100 3 3 1 3 3 3 3 3 3 3 3 2917500 4917100 54880 4908700 7631800 8106800 4132000 4050700 2744600 3150200 4000100 2716900 4588100 359050 5056100 7233000 7970300 4331300 4296300 2897400 3113800 3819900 1 1 1 1 1 1 1 1 1 1 1 3573200 6689800 0 7011500 4525700 3282300 3042600 5325400 3827100 4726000 5666400 3326700 6243500 272030 7074400 4299700 3619700 3188100 5293500 3924400 4640300 5409200 2 2 0 2 2 2 2 2 2 2 2 1191400000 667920000 523530000 8906 884 8300 47530;47531;47532 57562;57563;57564;57565 57564 4 IIDAALR Unmodified 770.46504 0.46503826 747 P20674 COX5A Cytochrome c oxidase subunit 5A, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4.29 1.03 2 2 2 1 3 4 46.79 46.85 2 0.0019737 12239 20211116_3444_TMUAki_TMT10x_S_F5 131.3 57.107 15861000 25389000 0 24309000 19016000 18419000 15431000 11311000 10745000 10760000 17083000 14766000 23687000 1132500 24788000 18129000 18967000 15695000 11842000 11361000 10532000 16283000 4 4 0 4 4 4 4 4 4 4 4 8218500 13187000 0 12545000 11081000 11650000 7719700 5686800 5418400 5435900 8595800 7650800 12303000 550520 12830000 10530000 11789000 7934900 6075400 5725800 5319300 8193700 2 2 0 2 2 2 2 2 2 2 2 7642200 12202000 0 11764000 7934600 6769100 7711600 5623800 5326300 5324500 8487200 7115200 11384000 581980 11958000 7598800 7178300 7760100 5766700 5635100 5212500 8089400 2 2 0 2 2 2 2 2 2 2 2 1568000000 944850000 623180000 8907 747 8301 47533;47534;47535;47536;47537;47538;47539 57566;57567;57568;57569;57570;57571 57570 6 IIDDSEITKEDDALWPPPDR Unmodified 2324.1172 0.11722119 1309;2405 P61326;Q96A72 MAGOH;MAGOHB Protein mago nashi homolog;Protein mago nashi homolog 2 no no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 71.052 70.917 3 4.5826E-42 22512 20211116_3428_TMUAki_TMT10x_P_F1 215.62 199.3 46549000 78095000 19811 67938000 57695000 75709000 69184000 36972000 29762000 43677000 56003000 43336000 72833000 3318900 70142000 55565000 75778000 68355000 39746000 32934000 42381000 53212000 8 8 1 8 8 8 8 8 8 8 8 26233000 43632000 19811 38289000 34588000 55201000 45038000 20987000 16815000 24547000 31246000 24423000 40693000 1943700 39691000 33405000 54423000 44264000 23171000 18853000 23828000 29695000 4 4 1 4 4 4 4 4 4 4 4 20316000 34463000 0 29649000 23107000 20508000 24145000 15985000 12947000 19130000 24757000 18914000 32140000 1375200 30451000 22160000 21354000 24091000 16575000 14081000 18554000 23517000 4 4 0 4 4 4 4 4 4 4 4 3791300000 2638400000 1152900000 8908 1309;2405 8302 47540;47541;47542 57572;57573;57574;57575;57576;57577;57578;57579 57572 8 IIDINYYPVPEACLSNKR Unmodified 2164.0987 0.098674772 791 P23921 RRM1 Ribonucleoside-diphosphate reductase large subunit yes yes 0 0 0 1 By MS/MS By MS/MS 6.33 2.43 1 3 2 4 2 68.227 68.352 3;4 1.6223E-31 21601 20211116_3436_TMUAki_TMT10x_P_F8 193.8 174.08 12266000 21818000 151270 19448000 11507000 18729000 12906000 9518100 9014400 10230000 12900000 11422000 20350000 1147300 19996000 11078000 18917000 12898000 10164000 9478800 9961600 12324000 3 3 3 3 3 3 3 3 3 3 3 9237600 16265000 107870 13951000 7998300 15163000 9351500 6646100 6047400 6945500 9208600 8602000 15169000 849030 14414000 7709700 15181000 9312600 7196100 6409000 6771000 8785400 2 2 2 2 2 2 2 2 2 2 2 3028800 5553100 43405 5496900 3509100 3565600 3554600 2872000 2967000 3284300 3691200 2820400 5181400 298290 5582800 3368400 3735900 3585000 2967400 3069800 3190700 3538300 1 1 1 1 1 1 1 1 1 1 1 2039900000 1760400000 279520000 8909 791 8303 47543;47544;47545;47546;47547;47548 57580;57581;57582;57583;57584 57582 5 IIDKEGDDYEVIPNSNFYVSR Unmodified 2472.1809 0.18088408 2946 Q9NTJ3;Q9NTJ3-2 SMC4 Structural maintenance of chromosomes protein 4 yes no 0 0 0 1 By MS/MS By MS/MS 4.4 0.8 4 1 2 3 66.916 66.88 3 3.1594E-19 20376 20211116_3434_TMUAki_TMT10x_P_F6 148.52 144.36 6723300 11679000 723.02 10553000 7427400 13244000 8774700 7837200 7185400 7939300 8876200 6259900 10894000 552290 10886000 7154600 13205000 8780900 8244300 7439500 7749700 8510200 2 2 1 2 2 2 2 2 2 2 2 6723300 11679000 723.02 10553000 7427400 13244000 8774700 7837200 7185400 7939300 8876200 6259900 10894000 552290 10886000 7154600 13205000 8780900 8244300 7439500 7749700 8510200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2370200000 1469300000 900890000 8910 2946 8304 47549;47550;47551;47552;47553 57585;57586;57587;57588 57586 4 IIDSLFNTVTDKK Unmodified 1492.8137 0.81370936 283 O60701;O60701-3;O60701-2 UGDH UDP-glucose 6-dehydrogenase yes no 0 0 0 1 By MS/MS By MS/MS 6 2.61 1 1 1 2 3 2 76.305 76.293 3 9.2918E-05 26752 20211116_3439_TMUAki_TMT10x_S_F1 95.538 79.4 73771000 120130000 0 108690000 68747000 136610000 79647000 63394000 62400000 68294000 79950000 68672000 112050000 4043500 111710000 66063000 135370000 79685000 68291000 64851000 66498000 76582000 5 5 0 4 4 3 5 3 4 4 5 67927000 109510000 0 101670000 68628000 136610000 79474000 63394000 62323000 68107000 79445000 63231000 102150000 3723700 104800000 65952000 135370000 79516000 68291000 64761000 66323000 76107000 3 3 0 3 3 3 3 3 3 3 3 5844500 10622000 0 7012800 119440 0 172320 0 76720 187150 505890 5441100 9897700 319750 6914500 111050 0 169060 0 89496 175070 474720 2 2 0 1 1 0 2 0 1 1 2 4357300000 2440700000 1916600000 8911 283 8305 47554;47555;47556;47557;47558 57589;57590;57591 57590 3 IIDVVYNASNNELVR Unmodified 1717.8999 0.89989861 1338 P62241 RPS8 40S ribosomal protein S8 yes yes 0 0 0 0 By MS/MS By MS/MS 5.48 1.66 1 2 4 4 5 4 3 11 12 72.409 72.409 2;3 1.4673E-86 22980 20211116_3445_TMUAki_TMT10x_S_F6 354.38 289.08 70522000 118840000 553170 112990000 78820000 101760000 76513000 68568000 61801000 67816000 82711000 65662000 110870000 5843400 115510000 75511000 103610000 77276000 71367000 64258000 66264000 79141000 25 25 15 25 25 25 25 25 25 25 25 37184000 60293000 233120 57245000 40005000 70440000 43131000 36689000 32191000 35773000 42905000 34622000 56248000 3161500 58812000 38440000 70187000 43248000 38979000 33607000 34975000 41057000 12 12 8 12 12 12 12 12 12 12 12 33339000 58545000 320040 55744000 38815000 31319000 33382000 31878000 29610000 32044000 39806000 31040000 54618000 2682000 56700000 37070000 33425000 34028000 32388000 30650000 31289000 38084000 13 13 7 13 13 13 13 13 13 13 13 35112000000 18536000000 16576000000 8912 1338 8306 47559;47560;47561;47562;47563;47564;47565;47566;47567;47568;47569;47570;47571;47572;47573;47574;47575;47576;47577;47578;47579;47580;47581 57592;57593;57594;57595;57596;57597;57598;57599;57600;57601;57602;57603;57604;57605;57606;57607;57608;57609;57610;57611;57612;57613;57614;57615;57616;57617;57618;57619;57620 57613 29 IIECTHCGCR Unmodified 1304.5424 0.54239544 996 P41223 BUD31 Protein BUD31 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 29.051 29.038 3 1.1664E-08 5955 20211116_3431_TMUAki_TMT10x_P_F4 163.65 151.37 378920 647260 1207.9 555550 651580 804460 458090 484230 526300 465030 502900 352820 603620 36018 576950 619960 796980 476890 507920 531610 454960 485860 2 2 1 2 2 2 2 2 2 2 2 378920 647260 1207.9 555550 651580 804460 458090 484230 526300 465030 502900 352820 603620 36018 576950 619960 796980 476890 507920 531610 454960 485860 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29964000 29964000 0 8913 996 8307 47582;47583;47584 57621;57622;57623 57621 3 IIEEDDAYDFSTDYV Unmodified 1793.752 0.75195655 2698 Q9BVP2;Q9BVP2-2 GNL3 Guanine nucleotide-binding protein-like 3 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 80.117 80.098 2 0.00017164 26346 20211116_3428_TMUAki_TMT10x_P_F1 87.328 81.486 2858100 4658100 48948 4415700 3261500 4590800 3412800 2938300 3007200 3419200 3733100 2661100 4345600 237030 4524500 3130700 4628900 3441300 3085200 3102800 3319500 3578700 2 2 1 2 2 2 2 2 2 2 2 1559100 2358300 0 2035400 1447300 2816400 1669200 1597400 1420200 1831500 1879700 1451300 2199300 76498 2110900 1390000 2793600 1673800 1692700 1472000 1779100 1799000 1 1 0 1 1 1 1 1 1 1 1 1299000 2299800 48948 2380300 1814200 1774400 1743600 1340800 1587000 1587700 1853400 1209800 2146300 160530 2413600 1740700 1835300 1767500 1392600 1630800 1540400 1779700 1 1 1 1 1 1 1 1 1 1 1 948730000 588160000 360560000 8914 2698 8308 47585;47586 57624;57625 57624 2 IIEETLALK Unmodified 1028.6118 0.61176208 168 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.632 1 3 1 2 3 70.081 70.081 2 6.1382E-06 22630 20211116_3431_TMUAki_TMT10x_P_F4 163.72 131.5 4804200 7144800 0 7613000 6560000 8883500 5655800 5214100 5137900 4919800 5568000 4472900 6668600 381170 7752500 6264600 8889100 5768200 5477800 5264900 4817000 5357900 1 1 0 1 1 1 1 1 1 1 1 4804200 7144800 0 7613000 6560000 8883500 5655800 5214100 5137900 4919800 5568000 4472900 6668600 381170 7752500 6264600 8889100 5768200 5477800 5264900 4817000 5357900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 832970000 349310000 483660000 8915 168 8309 47587;47588;47589;47590;47591 57626;57627;57628 57626 3 IIENAENEYQTAISENYQTMSDTTFK Oxidation (M) 3055.3604 0.36044094 1192 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 0 0 1 0 By MS/MS By MS/MS 2.14 0.833 2 2 3 3 4 76.919 76.85 3;4 3.6016E-07 27989 20211116_3441_TMUAki_TMT10x_S_F3 86.006 79.357 10750000 19056000 73525 16084000 12417000 18449000 13399000 13978000 13949000 13322000 14130000 10008000 17770000 807890 16653000 11924000 18548000 13557000 14418000 14173000 13038000 13625000 5 5 1 5 5 5 5 5 5 5 5 6258200 10526000 73525 9348300 5966600 12943000 7455800 7809800 7265300 7903400 7682300 5826900 9817200 500000 9673800 5757500 12849000 7478900 8202400 7414300 7715000 7397900 3 3 1 3 3 3 3 3 3 3 3 4491400 8530600 0 6735300 6450400 5505300 5942900 6168500 6683700 5418400 6447400 4181200 7953200 307890 6979600 6166200 5699200 6077600 6215800 6758700 5322800 6226900 2 2 0 2 2 2 2 2 2 2 2 3397500000 1886900000 1510500000 8916 1192 8310 47592;47593;47594;47595;47596;47597;47598 57629;57630;57631;57632;57633;57634 57634 1598 6 IIENELEGFGIR Unmodified 1388.73 0.72997974 3234 Q9Y295 DRG1 Developmentally-regulated GTP-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2 1.22 2 1 1 2 2 76.553 76.539 2 2.9805E-15 24837 20211116_3428_TMUAki_TMT10x_P_F1 192.14 153.84 12378000 21042000 282390 17620000 13149000 23120000 15383000 14860000 14600000 15383000 15606000 11527000 19622000 1300200 18299000 12682000 23028000 15462000 15541000 14923000 15003000 15024000 4 4 4 4 4 4 4 4 4 4 4 9429300 15640000 133940 13040000 9361800 19435000 11851000 11050000 11189000 11596000 11878000 8780600 14584000 905640 13582000 9047200 19216000 11870000 11674000 11436000 11303000 11437000 3 3 3 3 3 3 3 3 3 3 3 2948700 5402500 148450 4580200 3787700 3684700 3531600 3810400 3411300 3787000 3728100 2746700 5038100 394570 4717300 3634400 3811800 3591900 3867100 3487000 3699600 3586500 1 1 1 1 1 1 1 1 1 1 1 1248500000 799420000 449100000 8917 3234 8311 47599;47600;47601;47602 57635;57636;57637;57638;57639 57635 5 IIETLTQQLQAK Unmodified 1384.7926 0.79257999 3123 Q9UHV9 PFDN2 Prefoldin subunit 2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.89 3.48 4 5 4 5 77.607 77.583 2;3 6.8741E-24 25441 20211116_3436_TMUAki_TMT10x_P_F8 242.59 187.53 40771000 65494000 301560 65127000 42286000 69658000 45445000 42836000 51755000 49765000 49108000 37963000 61111000 3559900 66534000 40636000 70081000 46127000 45114000 52282000 48318000 47455000 6 6 4 6 6 6 6 6 6 6 6 28375000 45175000 215570 45553000 32562000 55869000 34102000 28368000 35954000 34554000 33571000 26421000 42154000 2591200 46599000 31272000 55662000 34568000 30416000 36412000 33492000 32459000 4 4 3 4 4 4 4 4 4 4 4 12396000 20319000 85989 19575000 9724500 13789000 11343000 14468000 15801000 15212000 15536000 11541000 18957000 968730 19935000 9363600 14419000 11559000 14698000 15870000 14826000 14996000 2 2 1 2 2 2 2 2 2 2 2 5151100000 3524500000 1626500000 8918 3123 8312 47603;47604;47605;47606;47607;47608;47609;47610;47611 57640;57641;57642;57643;57644;57645;57646 57643 7 IIETPGIR Unmodified 897.52837 0.5283668 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 By MS/MS 5 0 1 1 45.039 45.183 2 0.0035243 11583 20211116_3444_TMUAki_TMT10x_S_F5 97.798 70.312 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8919 1018 8313 47612 57647 57647 1 IIEVAPQVATQNVNPTPGATS Unmodified 2106.0957 0.095697884 1127 P49903;P49903-2;P49903-3 SEPHS1 Selenide, water dikinase 1 yes no 0 0 0 0 By MS/MS 5 0 1 1 69.695 69.712 3 1.4212E-05 21552 20211116_3444_TMUAki_TMT10x_S_F5 79.511 66.374 1503000 2665000 0 2569600 1877300 1554800 1526900 1659100 1541200 1750600 1857200 1399300 2486300 110170 2613000 1789900 1648900 1567600 1684300 1578500 1706000 1781800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1503000 2665000 0 2569600 1877300 1554800 1526900 1659100 1541200 1750600 1857200 1399300 2486300 110170 2613000 1789900 1648900 1567600 1684300 1578500 1706000 1781800 1 1 0 1 1 1 1 1 1 1 1 1076900000 0 1076900000 8920 1127 8314 47613 57648 57648 1 IIEVVDAIMTTAQSHQR Unmodified 1910.9884 0.98839604 1487 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 By MS/MS By MS/MS 5 3 1 1 1 1 80 79.987 3 0.00010486 27775 20211116_3429_TMUAki_TMT10x_P_F2 77.468 65.302 2829500 4769400 0 4491500 3789500 2623100 3650500 1792100 1427700 2022300 3181400 2634200 4449300 197660 4573800 3626800 2768800 3641300 1870900 1611900 1965600 3014700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2829500 4769400 0 4491500 3789500 2623100 3650500 1792100 1427700 2022300 3181400 2634200 4449300 197660 4573800 3626800 2768800 3641300 1870900 1611900 1965600 3014700 1 1 0 1 1 1 1 1 1 1 1 255760000 0 255760000 8921 1487 8315 47614;47615 57649;57650 57649 2 IIEVVDAIMTTAQSHQR Oxidation (M) 1926.9833 0.98331066 1487 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 1 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 71.69 71.635 3 0.00014725 24702 20211116_3446_TMUAki_TMT10x_S_F7 73.464 52.213 18866000 31638000 523910 25949000 21982000 36366000 23920000 27887000 27784000 28124000 27059000 17569000 29500000 1943400 27030000 21148000 36214000 24282000 28789000 28070000 27457000 26125000 5 5 4 5 5 5 5 5 5 5 5 11447000 19189000 327350 15288000 11666000 26429000 15063000 17307000 16304000 16449000 16390000 10659000 17890000 1104500 16039000 11282000 26032000 15139000 18032000 16535000 16101000 15808000 3 3 2 3 3 3 3 3 3 3 3 7419900 12449000 196560 10661000 10315000 9937300 8857600 10579000 11480000 11674000 10669000 6910100 11610000 838900 10991000 9866200 10182000 9142100 10757000 11535000 11357000 10317000 2 2 2 2 2 2 2 2 2 2 2 1378100000 807870000 570210000 8922 1487 8315 47616;47617;47618 57651;57652;57653;57654;57655;57656 57654 2016 6 IIFDDFR Unmodified 924.47052 0.47051757 1061 P46977;P46977-2 STT3A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 66.773 66.743 2 0.0071645 20353 20211116_3444_TMUAki_TMT10x_S_F5 104.76 65.222 13521000 21660000 123890 22042000 16429000 27755000 16796000 15840000 16363000 16703000 17493000 12591000 20213000 1277200 22545000 15769000 27655000 17005000 16732000 16706000 16278000 16840000 3 3 3 3 3 3 3 3 3 3 3 13521000 21660000 123890 22042000 16429000 27755000 16796000 15840000 16363000 16703000 17493000 12591000 20213000 1277200 22545000 15769000 27655000 17005000 16732000 16706000 16278000 16840000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1312600000 1312600000 0 8923 1061 8316 47619;47620;47621;47622;47623;47624 57657;57658;57659;57660;57661;57662 57662 6 IIFEDDR Unmodified 906.4447 0.44469675 1120 P49773 HINT1 Histidine triad nucleotide-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 48.965 48.81 2 0.0017366 13726 20211116_3440_TMUAki_TMT10x_S_F2 134.06 81.373 23307000 33667000 13280 41009000 43229000 40721000 24537000 31954000 34594000 28559000 33552000 21699000 31442000 1943400 41313000 40963000 41305000 26177000 32829000 34717000 28032000 32399000 6 6 1 6 6 6 6 6 6 6 6 13130000 18948000 13280 23340000 35730000 32128000 16050000 18467000 20079000 16104000 18447000 12224000 17697000 1276100 23632000 33756000 31881000 17434000 19395000 20192000 15825000 17845000 4 4 1 4 4 4 4 4 4 4 4 10177000 14719000 0 17669000 7499200 8593400 8486300 13487000 14516000 12455000 15106000 9474500 13745000 667300 17681000 7206300 9424200 8743100 13435000 14524000 12207000 14554000 2 2 0 2 2 2 2 2 2 2 2 2224200000 1331900000 892340000 8924 1120 8317 47625;47626;47627;47628;47629;47630 57663;57664;57665;57666;57667;57668;57669 57668 7 IIFEDDRCLAFHDISPQAPTHFLVIPK Unmodified 3178.6274 0.62737592 1120 P49773 HINT1 Histidine triad nucleotide-binding protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 5.64 2.7 5 2 1 1 3 6 10 13 15 75.462 75.461 3;4;5;6 5.3147E-52 24819 20211116_3436_TMUAki_TMT10x_P_F8 209.41 196.98 264420000 454640000 3267100 386160000 298530000 432080000 306390000 272040000 241210000 280960000 330120000 246210000 423980000 19262000 399470000 286500000 433740000 308350000 284940000 251390000 274030000 315700000 45 45 28 45 45 45 45 45 45 45 45 167380000 280390000 1420400 235190000 149710000 311350000 176050000 159790000 144460000 168100000 198530000 155850000 261470000 10043000 244260000 144170000 309080000 176220000 170360000 150260000 163830000 189850000 20 20 12 20 20 20 20 20 20 20 20 97035000 174250000 1846700 150970000 148820000 120730000 130340000 112250000 96749000 112860000 131590000 90361000 162510000 9219300 155200000 142330000 124670000 132140000 114580000 101130000 110200000 125860000 25 25 16 25 25 25 25 25 25 25 25 118460000000 54552000000 63905000000 8925 1120 8318 47631;47632;47633;47634;47635;47636;47637;47638;47639;47640;47641;47642;47643;47644;47645;47646;47647;47648;47649;47650;47651;47652;47653;47654;47655;47656;47657;47658 57670;57671;57672;57673;57674;57675;57676;57677;57678;57679;57680;57681;57682;57683;57684;57685;57686;57687;57688;57689;57690;57691;57692;57693;57694;57695;57696;57697;57698;57699;57700;57701;57702;57703;57704;57705;57706;57707;57708;57709;57710;57711;57712;57713;57714 57684 45 IIFKLPNDSR Unmodified 1201.6819 0.68190733 2426 Q96CS3 FAF2 FAS-associated factor 2 yes yes 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 55.01 54.761 3 0.0069299 18040 20211116_3430_TMUAki_TMT10x_P_F3 66.486 33.853 3741600 5110500 0 5241800 5997700 6691300 3982200 3550000 3541800 3468100 4316000 3483000 4769200 249680 5359900 5694200 6656600 4131100 3765400 3649900 3390500 4139600 1 1 0 1 1 1 1 1 1 1 1 3741600 5110500 0 5241800 5997700 6691300 3982200 3550000 3541800 3468100 4316000 3483000 4769200 249680 5359900 5694200 6656600 4131100 3765400 3649900 3390500 4139600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 250380000 250380000 0 8926 2426 8319 47659;47660 57715;57716 57716 2 IIFLHGK Unmodified 826.50651 0.50650915 2422 Q96C86 DCPS m7GpppX diphosphatase yes yes 0 0 0 0 By MS/MS 3 0 1 1 49.155 48.803 3 0.0098687 16641 20211116_3441_TMUAki_TMT10x_S_F3 77.374 8.9757 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8927 2422 8320 47661 57717 57717 1 IIFSEHLPLSK Unmodified 1282.7285 0.72852317 3241 Q9Y2L1;Q9Y2L1-2 DIS3 Exosome complex exonuclease RRP44 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 1 1 1 1 61.928 61.93 3 1.4647E-05 18377 20211116_3447_TMUAki_TMT10x_S_F8 102.52 79.645 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8928 3241 8321 47662;47663 57718;57719 57719 2 IIFVVGGPGSGK Unmodified 1129.6495 0.64954457 474 P00568 AK1 Adenylate kinase isoenzyme 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.11 0.737 2 4 3 4 5 66.632 66.378 2;3 2.1955E-09 23855 20211116_3441_TMUAki_TMT10x_S_F3 157.66 94.098 45266000 71836000 252650 72379000 51328000 61855000 48166000 46940000 46385000 47246000 54148000 42147000 67033000 3927300 73642000 49142000 63328000 48967000 48487000 47543000 46131000 51994000 11 11 8 11 11 11 11 11 11 11 11 22730000 34393000 157280 34965000 25834000 39240000 23942000 23156000 22811000 23029000 26894000 21165000 32095000 2048300 35693000 24731000 39350000 24349000 24351000 23401000 22497000 25817000 5 5 4 5 5 5 5 5 5 5 5 22535000 37443000 95368 37414000 25494000 22615000 24225000 23783000 23574000 24217000 27254000 20982000 34938000 1879000 37949000 24411000 23978000 24618000 24135000 24142000 23634000 26177000 6 6 4 6 6 6 6 6 6 6 6 4500900000 2320800000 2180100000 8929 474 8322 47664;47665;47666;47667;47668;47669;47670;47671;47672 57720;57721;57722;57723;57724;57725;57726;57727;57728;57729;57730 57726 11 IIGATDSCGDLMFLMK 2 Oxidation (M) 1802.8253 0.82527838 1035 P45973 CBX5 Chromobox protein homolog 5 yes yes 0 0 2 0 By MS/MS By MS/MS 5.57 0.904 1 2 3 1 3 4 73.864 73.884 2;3 1.4876E-10 25622 20211116_3446_TMUAki_TMT10x_S_F7 125.61 115.13 26096000 46242000 199310 35808000 32838000 49608000 32742000 45183000 48813000 44980000 39680000 24299000 43110000 2394300 37473000 31493000 49586000 33714000 46156000 48632000 43938000 38560000 8 8 6 8 8 8 8 8 8 8 8 11613000 19407000 92967 14436000 11906000 27320000 13681000 17738000 20516000 18969000 16040000 10814000 18090000 1038700 15270000 11466000 26821000 13996000 18555000 20414000 18475000 15612000 3 3 2 3 3 3 3 3 3 3 3 14483000 26835000 106340 21373000 20931000 22288000 19060000 27445000 28297000 26011000 23640000 13486000 25019000 1355600 22203000 20027000 22765000 19717000 27601000 28218000 25463000 22949000 5 5 4 5 5 5 5 5 5 5 5 6567800000 2787200000 3780600000 8930 1035 8323 47673;47674;47675;47676;47677;47678;47679 57731;57732;57733;57734;57735;57736;57737;57738;57739;57740 57739 1337;1338 10 IIGATDSCGDLMFLMK Unmodified 1770.8354 0.83544914 1035 P45973 CBX5 Chromobox protein homolog 5 yes yes 0 0 0 0 By matching By MS/MS 7.5 0.5 1 1 1 1 79.681 79.69 3 1.9395E-05 25690 20211116_3447_TMUAki_TMT10x_S_F8 92.457 81.187 2176000 3649300 55861 3797200 2867800 2272100 2966700 1363700 1296100 1442000 2552400 2026500 3405800 242160 3840500 2755700 2388300 2952400 1434700 1436200 1405100 2423300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2176000 3649300 55861 3797200 2867800 2272100 2966700 1363700 1296100 1442000 2552400 2026500 3405800 242160 3840500 2755700 2388300 2952400 1434700 1436200 1405100 2423300 1 1 1 1 1 1 1 1 1 1 1 1351700000 924070000 427590000 8931 1035 8323 47680;47681 57741 57741 1 IIGATDSSGELMFLMK 2 Oxidation (M) 1743.8423 0.84230866 1607;1451 Q13185;P83916 CBX3;CBX1 Chromobox protein homolog 3;Chromobox protein homolog 1 no no 0 0 2 0 By MS/MS By MS/MS 6.05 1.29 3 5 4 6 3 13 8 67.659 67.701 2;3 3.3696E-21 25901 20211116_3446_TMUAki_TMT10x_S_F7 167.12 149.31 54229000 94881000 963490 72383000 65540000 111300000 63047000 114940000 128730000 105030000 88583000 50495000 88450000 5034200 76014000 62805000 111070000 66115000 116380000 126660000 102980000 86696000 22 22 13 22 22 22 22 22 22 22 22 24399000 39990000 655770 32054000 26528000 65104000 28607000 47152000 52732000 45253000 36701000 22721000 37285000 2476600 33755000 25516000 63881000 29656000 48790000 52021000 44274000 35900000 10 10 5 10 10 10 10 10 10 10 10 29829000 54891000 307730 40329000 39012000 46196000 34440000 67786000 75997000 59775000 51883000 27774000 51165000 2557600 42259000 37288000 47184000 36459000 67591000 74640000 58710000 50796000 12 12 8 12 12 12 12 12 12 12 12 32243000000 16828000000 15416000000 8932 1607;1451 8324 47682;47683;47684;47685;47686;47687;47688;47689;47690;47691;47692;47693;47694;47695;47696;47697;47698;47699;47700;47701;47702 57742;57743;57744;57745;57746;57747;57748;57749;57750;57751;57752;57753;57754;57755;57756;57757;57758;57759;57760;57761;57762;57763;57764;57765;57766;57767;57768 57767 1955;1956 27 IIGATDSSGELMFLMK Oxidation (M) 1727.8474 0.84739403 1607;1451 Q13185;P83916 CBX3;CBX1 Chromobox protein homolog 3;Chromobox protein homolog 1 no no 0 0 1 0 By MS/MS By MS/MS 6.93 0.929 1 4 5 5 10 5 68.856 68.901 2;3 1.2616E-20 27414 20211116_3446_TMUAki_TMT10x_S_F7 163.16 151.63 33596000 53974000 314870 50335000 38383000 43884000 39735000 24206000 19003000 26637000 37977000 31283000 50350000 3037600 51511000 36849000 44661000 39592000 25677000 20913000 25915000 36048000 16 16 14 16 16 16 16 16 16 16 16 15615000 25048000 185240 22972000 15874000 26132000 18630000 12031000 9350600 13034000 17440000 14540000 23365000 1427400 23629000 15299000 26110000 18466000 12974000 10206000 12689000 16574000 12 12 11 12 12 12 12 12 12 12 12 17981000 28926000 129630 27363000 22508000 17751000 21104000 12175000 9652200 13602000 20537000 16743000 26985000 1610200 27881000 21551000 18551000 21126000 12703000 10707000 13226000 19474000 4 4 3 4 4 4 4 4 4 4 4 5437800000 2015200000 3422600000 8933 1607;1451 8324 47703;47704;47705;47706;47707;47708;47709;47710;47711;47712;47713;47714;47715;47716;47717 57769;57770;57771;57772;57773;57774;57775;57776;57777;57778;57779;57780;57781;57782;57783;57784;57785;57786 57785 1955;1956 18 IIGATDSSGELMFLMK Unmodified 1711.8525 0.85247941 1607;1451 Q13185;P83916 CBX3;CBX1 Chromobox protein homolog 3;Chromobox protein homolog 1 no no 0 0 0 0 By MS/MS By MS/MS 6.62 0.696 4 3 1 3 5 79.75 79.756 2;3 1.1372E-46 28160 20211116_3446_TMUAki_TMT10x_S_F7 247.29 221.85 50665000 78509000 296640 86336000 53693000 35292000 55488000 13446000 10266000 15551000 45967000 47174000 73287000 4270500 86761000 51530000 38610000 54791000 14837000 13689000 15101000 43237000 8 8 5 8 8 8 8 8 8 8 8 15630000 23663000 119350 25912000 15211000 16971000 18462000 5685900 4840500 6126700 14764000 14554000 22088000 1396800 26142000 14673000 17587000 18136000 6363800 5872600 5965500 13935000 3 3 2 3 3 3 3 3 3 3 3 35035000 54847000 177290 60424000 38483000 18320000 37026000 7760400 5425200 9424500 31203000 32620000 51199000 2873700 60619000 36857000 21023000 36655000 8473000 7816700 9135900 29303000 5 5 3 5 5 5 5 5 5 5 5 9759100000 2628900000 7130200000 8934 1607;1451 8324 47718;47719;47720;47721;47722;47723;47724;47725 57787;57788;57789;57790;57791;57792;57793;57794 57792 8 IIGDPYK Unmodified 804.43815 0.43815481 2380 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 0 0 By MS/MS 5 0 1 1 48.528 48.711 2 0.0096673 14123 20211116_3433_TMUAki_TMT10x_P_F5 99.171 40.593 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8935 2380 8325 47726 57795 57795 1 IIGDTFVK Unmodified 891.50657 0.50656873 1128 P49915;P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 58.652 58.701 2 0.0063903 17418 20211116_3445_TMUAki_TMT10x_S_F6 92.47 31.672 34802000 59578000 208410 52440000 59862000 73148000 39926000 72914000 78450000 66529000 60431000 32406000 55566000 3430500 54311000 56909000 73236000 42733000 73954000 77485000 65239000 58853000 2 2 2 2 2 2 2 2 2 2 2 16822000 26467000 202450 23890000 42170000 53479000 26233000 34369000 35697000 29041000 27672000 15664000 24687000 1938300 24996000 40046000 52226000 27736000 35749000 35617000 28582000 26942000 1 1 1 1 1 1 1 1 1 1 1 17981000 33111000 5962.2 28550000 17691000 19669000 13692000 38545000 42753000 37489000 32759000 16742000 30879000 1492200 29315000 16863000 21010000 14997000 38206000 41868000 36657000 31911000 1 1 1 1 1 1 1 1 1 1 1 922690000 471980000 450710000 8936 1128 8326 47727;47728 57796;57797 57797 2 IIGFSTSVTALGFVLYK Unmodified 1815.0182 0.018222832 757 P21397;P21397-2 MAOA Amine oxidase [flavin-containing] A yes no 0 0 0 0 By MS/MS 8 0 1 1 82.978 82.982 3 0.10907 27609 20211116_3436_TMUAki_TMT10x_P_F8 25.59 5.3861 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8937 757 8327 47729 57798 57798 1 IIGHFYASQMAQR Oxidation (M) 1536.7507 0.75073195 3032 Q9NZI8;Q9NZI8-2 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes no 0 0 1 0 By MS/MS By MS/MS 2.8 1.72 1 2 1 1 2 3 39.687 39.627 3 3.599E-05 9952 20211116_3440_TMUAki_TMT10x_S_F2 98.407 86.194 2110800 3351200 37477 3628400 3632500 3747400 2463500 3220200 3126400 2516100 3221200 1965500 3128000 214210 3683800 3454800 3798400 2580400 3279600 3155000 2486400 3104400 5 5 4 5 5 5 5 5 5 5 5 1183100 1801600 4987.7 1863300 2740200 2971800 1590400 1905000 1660200 1324800 1817000 1101500 1681300 107510 1913100 2597700 2935200 1675500 1973300 1691500 1317800 1747900 2 2 1 2 2 2 2 2 2 2 2 927690 1549600 32489 1765200 892290 775580 873030 1315300 1466200 1191300 1404200 864010 1446700 106690 1770700 857050 863280 904920 1306300 1463500 1168600 1356500 3 3 3 3 3 3 3 3 3 3 3 461660000 269340000 192310000 8938 3032 8328 47730;47731;47732;47733;47734 57799;57800;57801;57802 57800 3080 4 IIGHFYASQMAQR Unmodified 1520.7558 0.75581733 3032 Q9NZI8;Q9NZI8-2 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 46.081 46.241 3 1.0434E-10 13257 20211116_3442_TMUAki_TMT10x_S_F4 140.57 115.39 2768300 4396700 89095 5466100 5073600 4612100 3324100 3581100 3388700 2971400 4089600 2578200 4106600 344830 5488000 4826300 4728000 3465300 3674800 3469500 2927100 3923400 2 2 2 2 2 2 2 2 2 2 2 1845800 2795200 61148 3459300 4042900 3906100 2524900 2156600 2221300 1916200 2593900 1719100 2610700 240790 3488800 3842100 3912400 2631100 2273800 2286300 1881400 2490700 1 1 1 1 1 1 1 1 1 1 1 922430 1601500 27947 2006900 1030700 706000 799250 1424500 1167400 1055200 1495800 859080 1495900 104040 1999200 984190 815610 834220 1401000 1183200 1045800 1432700 1 1 1 1 1 1 1 1 1 1 1 542640000 330810000 211840000 8939 3032 8328 47735;47736 57803;57804 57804 2 IIGLDQVAGMSETALPGAFK Oxidation (M) 2033.0503 0.050327596 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 1 0 By MS/MS By MS/MS 7.2 0.4 4 1 2 3 77.914 77.943 2;3 2.8237E-05 24938 20211116_3447_TMUAki_TMT10x_S_F8 78.088 29.8 16915000 29796000 809400 28265000 24982000 22823000 23052000 20529000 19805000 21171000 23194000 15755000 27797000 2239200 28862000 23952000 23535000 23383000 21008000 20411000 20650000 22269000 4 4 3 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16915000 29796000 809400 28265000 24982000 22823000 23052000 20529000 19805000 21171000 23194000 15755000 27797000 2239200 28862000 23952000 23535000 23383000 21008000 20411000 20650000 22269000 4 4 3 4 4 4 4 4 4 4 4 5107400000 1432800000 3674600000 8940 934 8329 47737;47738;47739;47740;47741 57805;57806;57807;57808;57809;57810 57808 1173 6 IIGLDQVAGMSETALPGAFK Unmodified 2017.0554 0.055412974 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 79.535 79.545 3 8.2577E-19 25600 20211116_3447_TMUAki_TMT10x_S_F8 156.73 139.98 12612000 21427000 205130 21063000 14390000 13195000 15937000 6717900 5735600 8305900 13562000 11744000 19992000 1247200 21395000 13848000 13782000 15769000 7204700 6559100 8046600 12841000 3 3 2 3 3 3 3 3 3 3 3 5125400 9034500 12692 8921100 4955900 7162300 6661800 2387200 1835600 3198300 5555100 4772400 8429700 434390 9082700 4795600 7297700 6518700 2692400 2210600 3090200 5243700 1 1 1 1 1 1 1 1 1 1 1 7486300 12392000 192440 12142000 9433900 6033200 9275400 4330700 3899900 5107700 8007000 6971800 11562000 812830 12313000 9052400 6484700 9250300 4512300 4348500 4956400 7596900 2 2 1 2 2 2 2 2 2 2 2 5492000000 1902400000 3589600000 8941 934 8329 47742;47743;47744 57811;57812;57813 57813 3 IIGLKPEGVPR Unmodified 1177.7183 0.71829284 1225 P54709;P54709-2 ATP1B3 Sodium/potassium-transporting ATPase subunit beta-3 yes no 0 0 0 1 By MS/MS By MS/MS 3 2.53 1 3 1 1 4 48.691 48.524 3 8.1405E-05 13771 20211116_3440_TMUAki_TMT10x_S_F2 88.803 70.057 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8942 1225 8330 47745;47746;47747;47748;47749 57814;57815;57816;57817;57818 57817 5 IIGVDINKDK Unmodified 1113.6394 0.63937381 631 P11766 ADH5 Alcohol dehydrogenase class-3 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 50.327 50.895 3 0.00012498 16204 20211116_3446_TMUAki_TMT10x_S_F7 86.911 27.369 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8943 631 8331 47750;47751 57819;57820 57820 2 IIGVHQEDELLECLSPATSR Unmodified 2266.1263 0.12634609 2387 Q93009;Q93009-3 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes no 0 0 0 0 By MS/MS By MS/MS 2.86 0.833 3 2 2 4 3 69.796 69.592 3 3.3131E-18 22871 20211116_3442_TMUAki_TMT10x_S_F4 145.52 131.53 30112000 54610000 92594 40854000 40150000 30015000 50052000 17264000 12650000 18320000 35039000 28037000 50906000 2554600 42487000 38741000 30959000 49094000 18228000 15301000 17849000 33108000 6 6 3 6 6 6 6 6 6 6 6 4498800 7985900 24318 6183700 4382600 6854500 5803000 3837600 3683700 4230100 5515300 4188600 7444900 347160 6445700 4236400 6873800 5746400 4065800 3905200 4115100 5263700 2 2 1 2 2 2 2 2 2 2 2 25613000 46625000 68276 34670000 35767000 23160000 44249000 13426000 8966500 14090000 29524000 23848000 43461000 2207500 36041000 34505000 24085000 43347000 14162000 11395000 13734000 27844000 4 4 2 4 4 4 4 4 4 4 4 2890300000 1380400000 1509900000 8944 2387 8332 47752;47753;47754;47755;47756;47757;47758 57821;57822;57823;57824;57825;57826;57827;57828;57829 57828 9 IIHDFPQFYPLGIVQHD Unmodified 2038.0312 0.031247134 927 P35244 RPA3 Replication protein A 14 kDa subunit yes yes 0 0 0 0 By MS/MS By MS/MS 7.25 1.16 1 1 3 7 10 2 61.565 61.572 3 0.00016104 27031 20211116_3435_TMUAki_TMT10x_P_F7 76.327 66.227 102680000 182890000 904430 148750000 108000000 184100000 110560000 116140000 106630000 115970000 124310000 95604000 170530000 5120200 154690000 103610000 183840000 111890000 121510000 109280000 113270000 119370000 13 13 8 13 13 13 13 13 13 13 13 72857000 129090000 904430 98736000 66773000 156760000 76446000 91885000 82078000 84730000 87226000 67840000 120340000 4253800 103740000 64293000 154660000 77211000 96482000 83437000 83046000 83984000 11 11 8 11 11 11 11 11 11 11 11 29822000 53802000 0 50011000 41223000 27344000 34116000 24253000 24552000 31243000 37086000 27763000 50189000 866420 50949000 39315000 29185000 34681000 25024000 25840000 30226000 35387000 2 2 0 2 2 2 2 2 2 2 2 15593000000 8524600000 7068200000 8945 927 8333 47759;47760;47761;47762;47763;47764;47765;47766;47767;47768;47769;47770 57830;57831;57832;57833;57834;57835;57836;57837;57838;57839;57840;57841 57831 12 IIHPIVR Unmodified 846.54396 0.54395729 1012 P42345 MTOR Serine/threonine-protein kinase mTOR yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 33.995 33.99 3 0.020037 9509 20211116_3439_TMUAki_TMT10x_S_F1 67.035 38.523 923690 1486800 0 1346800 1220700 1429600 1091400 992480 1224300 1107800 1227000 859900 1386800 61639 1385100 1166000 1441400 1117900 1034600 1239800 1077200 1183500 2 2 0 2 2 2 2 2 2 2 2 423890 667430 0 604420 657050 898160 513170 446300 563790 535460 589390 394660 622550 35267 625450 626190 886720 529620 479240 572250 519280 567770 1 1 0 1 1 1 1 1 1 1 1 499800 819340 0 742400 563640 531400 578240 546180 660560 572320 637570 465240 764250 26372 759650 539770 554700 588320 555360 667590 557880 615750 1 1 0 1 1 1 1 1 1 1 1 58403000 28092000 30311000 8946 1012 8334 47771;47772 57842;57843 57843 2 IIILDEADSMTDGAQQALRR Oxidation (M) 2231.1216 0.12159506 929 P35250 RFC2 Replication factor C subunit 2 yes yes 0 0 1 1 By MS/MS 4 0 1 1 58.031 58.168 3 6.2134E-09 17702 20211116_3431_TMUAki_TMT10x_P_F4 103.67 93.292 1850000 2991300 5701 2891000 2406800 4507000 2277700 2893100 2878900 2300600 2744500 1722600 2790800 166490 2980600 2304800 4455500 2335700 3005200 2897700 2271300 2651700 1 1 1 1 1 1 1 1 1 1 1 1850000 2991300 5701 2891000 2406800 4507000 2277700 2893100 2878900 2300600 2744500 1722600 2790800 166490 2980600 2304800 4455500 2335700 3005200 2897700 2271300 2651700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 691640000 691640000 0 8947 929 8335 47773 57844 57844 1167 1 IIILDEADSMTDGAQQALRR Unmodified 2215.1267 0.12668044 929 P35250 RFC2 Replication factor C subunit 2 yes yes 0 0 0 1 By MS/MS 5 0 1 1 70.699 70.712 3 6.7504E-05 22025 20211116_3444_TMUAki_TMT10x_S_F5 70.335 52.846 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8948 929 8335 47774 57845 57845 1 IIIPEIQK Unmodified 952.59572 0.59571809 1234 P55060;P55060-3;P55060-4 CSE1L Exportin-2 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 1.87 1 2 2 3 5 3 56.39 56.53 2 0.0016421 19851 20211116_3445_TMUAki_TMT10x_S_F6 119.29 44.182 41342000 67782000 143670 75270000 60403000 64876000 45750000 59239000 55572000 55339000 59732000 38492000 63276000 3603400 76104000 57543000 66606000 47477000 60398000 56253000 54208000 57492000 6 6 2 6 6 6 6 6 6 6 6 17363000 27499000 0 32209000 34513000 42162000 23562000 26041000 24086000 23970000 24534000 16165000 25677000 1548000 32675000 32809000 41975000 24489000 27229000 24497000 23496000 23654000 3 3 0 3 3 3 3 3 3 3 3 23979000 40283000 143670 43061000 25890000 22715000 22188000 33198000 31486000 31369000 35198000 22327000 37599000 2055400 43429000 24734000 24631000 22988000 33169000 31756000 30712000 33839000 3 3 2 3 3 3 3 3 3 3 3 5440800000 2327300000 3113600000 8949 1234 8336 47775;47776;47777;47778;47779;47780;47781;47782 57846;57847;57848;57849;57850;57851;57852;57853 57851 8 IIIPPFLAYGEK Unmodified 1359.7802 0.78022439 2413 Q96AY3 FKBP10 Peptidyl-prolyl cis-trans isomerase FKBP10 yes yes 0 0 0 0 By MS/MS By MS/MS 2.8 0.4 1 4 3 2 79.826 79.779 2;3 3.7381E-07 27648 20211116_3429_TMUAki_TMT10x_P_F2 131.28 90.297 31125000 49511000 237610 49004000 30400000 41322000 34343000 20589000 20715000 23796000 32612000 28983000 46197000 2791800 49913000 29263000 42104000 34208000 22076000 22092000 23108000 31092000 4 4 4 4 4 4 4 4 4 4 4 22177000 35298000 224770 34090000 20249000 31363000 22242000 15500000 15153000 17649000 23025000 20651000 32932000 2021100 34822000 19480000 31762000 22237000 16624000 16006000 17148000 21968000 3 3 3 3 3 3 3 3 3 3 3 8948400 14213000 12843 14914000 10151000 9958800 12101000 5089300 5561100 6147100 9587300 8331900 13264000 770690 15091000 9783000 10342000 11971000 5451900 6086500 5960000 9123900 1 1 1 1 1 1 1 1 1 1 1 5042700000 3662100000 1380600000 8950 2413 8337 47783;47784;47785;47786;47787 57854;57855;57856;57857;57858;57859 57854 6 IIITEDGEFK Unmodified 1163.6074 0.60740498 796 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 63.019 62.575 2 0.0048512 22277 20211116_3441_TMUAki_TMT10x_S_F3 71.349 39.977 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8951 796 8338 47788 57860 57860 1 IIKPLQYQSTVASGTVAR Unmodified 1931.084 0.084010986 1664 Q13823 GNL2 Nucleolar GTP-binding protein 2 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 51.065 51.257 3 0.0003363 14054 20211116_3444_TMUAki_TMT10x_S_F5 63.95 52.034 93700000 144460000 12606 193290000 159320000 169990000 85049000 146030000 109930000 132500000 89176000 87237000 134980000 7836800 193390000 150840000 174080000 90922000 149280000 110010000 129960000 86667000 3 3 1 3 3 3 3 3 3 3 3 54239000 79957000 12606 102410000 138770000 124700000 60877000 68066000 84068000 67104000 66196000 50502000 74693000 5692400 103220000 131100000 124390000 66541000 72035000 83876000 65577000 64410000 1 1 1 1 1 1 1 1 1 1 1 39461000 64507000 0 90886000 20552000 45291000 24172000 77962000 25864000 65394000 22980000 36735000 60290000 2144400 90174000 19741000 49686000 24381000 77242000 26136000 64385000 22257000 2 2 0 2 2 2 2 2 2 2 2 998340000 498650000 499690000 8952 1664 8339 47789;47790 57861;57862 57862 2 IIKPVLTQESATYIAEEYSR Unmodified 2310.2107 0.21072764 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 1 By MS/MS By MS/MS 6.58 1.11 3 2 4 3 7 5 68.92 69.108 3;4 2.2153E-53 21698 20211116_3445_TMUAki_TMT10x_S_F6 211.75 191.93 91095000 147020000 1027500 139020000 93192000 116130000 92406000 73891000 71506000 79777000 103000000 84823000 137160000 8096800 142050000 89371000 118760000 93125000 77435000 74777000 77671000 98386000 11 11 6 11 11 11 11 11 11 11 11 48820000 75767000 597410 71724000 41520000 72688000 45976000 37836000 36193000 40070000 55120000 45459000 70683000 4237000 73471000 39942000 73207000 46099000 40294000 37920000 39043000 52587000 8 8 5 8 8 8 8 8 8 8 8 42275000 71256000 430060 67295000 51673000 43438000 46430000 36055000 35313000 39706000 47880000 39364000 66474000 3859800 68575000 49429000 45557000 47026000 37140000 36857000 38629000 45799000 3 3 1 3 3 3 3 3 3 3 3 27643000000 16296000000 11347000000 8953 799 8340 47791;47792;47793;47794;47795;47796;47797;47798;47799;47800;47801;47802 57863;57864;57865;57866;57867;57868;57869;57870;57871;57872;57873;57874;57875;57876 57873 14 IILDLISESPIK Unmodified 1339.7963 0.79626839 1329;1330 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 0 By MS/MS By MS/MS 4.7 2.15 2 1 3 4 3 2 2 3 11 9 81.463 81.458 2;3 3.647E-57 28820 20211116_3446_TMUAki_TMT10x_S_F7 297.36 238.69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8954 1329;1330 8341 47803;47804;47805;47806;47807;47808;47809;47810;47811;47812;47813;47814;47815;47816;47817;47818;47819;47820;47821;47822 57877;57878;57879;57880;57881;57882;57883;57884;57885;57886;57887;57888;57889;57890;57891;57892;57893;57894;57895;57896 57894 20 IILLAEGR Unmodified 883.5491 0.54910224 786 P23526;P23526-2 AHCY Adenosylhomocysteinase yes no 0 0 0 0 By MS/MS By MS/MS 6.14 1.25 1 1 2 2 1 4 3 58.355 58.61 2 0.00044122 16945 20211116_3434_TMUAki_TMT10x_P_F6 149.99 52.522 39765000 65895000 81631 68334000 60371000 64609000 40017000 51403000 42320000 43243000 52635000 37025000 61497000 3477000 69484000 57368000 65753000 41727000 52685000 43319000 42569000 50456000 7 7 3 7 7 7 7 7 7 7 7 20385000 32538000 20087 35291000 39392000 49996000 25216000 26519000 22059000 22148000 26613000 18980000 30371000 1901200 36028000 37411000 49498000 26221000 28016000 22741000 21811000 25531000 4 4 2 4 4 4 4 4 4 4 4 19381000 33358000 61544 33043000 20979000 14613000 14801000 24885000 20262000 21095000 26022000 18045000 31125000 1575800 33456000 19957000 16255000 15506000 24669000 20578000 20759000 24924000 3 3 1 3 3 3 3 3 3 3 3 5423800000 2869300000 2554500000 8955 786 8342 47823;47824;47825;47826;47827;47828;47829 57897;57898;57899;57900;57901;57902;57903;57904 57900 8 IILPEGAK Unmodified 839.51165 0.5116541 494 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.2 0.4 4 1 2 3 54.583 54.791 2 0.039836 14636 20211116_3445_TMUAki_TMT10x_S_F6 60.973 17.946 28630000 46641000 361880 40221000 44619000 36182000 32671000 32620000 38031000 35525000 38159000 26660000 43497000 2934800 41426000 42504000 37029000 33931000 33433000 38460000 34576000 36807000 4 4 4 4 4 4 4 4 4 4 4 5335100 7004800 33704 7039300 6440100 8208200 5515800 5012200 6371600 5531200 5902400 4967800 6536300 489210 7196300 6153900 8218100 5669700 5272900 6428000 5380600 5708300 1 1 1 1 1 1 1 1 1 1 1 23295000 39637000 328170 33182000 38179000 27973000 27156000 27608000 31660000 29994000 32257000 21692000 36961000 2445600 34229000 36350000 28811000 28261000 28160000 32032000 29195000 31099000 3 3 3 3 3 3 3 3 3 3 3 1323700000 334290000 989410000 8956 494 8343 47830;47831;47832;47833;47834 57905;57906;57907;57908 57907 4 IILPPEK Unmodified 808.50584 0.50584045 1097 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 53.294 53.61 2 0.055253 15330 20211116_3445_TMUAki_TMT10x_S_F6 66.258 26.213 16060000 25769000 344500 26066000 15398000 15364000 14140000 18230000 17162000 17559000 20892000 14956000 24047000 1643300 26411000 14754000 16376000 14502000 18370000 17459000 17177000 20038000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16060000 25769000 344500 26066000 15398000 15364000 14140000 18230000 17162000 17559000 20892000 14956000 24047000 1643300 26411000 14754000 16376000 14502000 18370000 17459000 17177000 20038000 3 3 3 3 3 3 3 3 3 3 3 527540000 0 527540000 8957 1097 8344 47835;47836 57909;57910;57911 57910 3 IILSNPPSQGDYHGCPFR Unmodified 2056.9789 0.97889399 1109 P49643 PRIM2 DNA primase large subunit yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 51.687 51.682 3 3.3285E-31 14268 20211116_3447_TMUAki_TMT10x_S_F8 182.1 176.44 3721500 6712300 103290 6835800 5002400 5710500 4072700 5093600 4858700 4543400 5598400 3465800 6263800 422740 6948100 4779400 5873100 4204100 5193500 4934700 4460000 5377700 3 3 3 3 3 3 3 3 3 3 3 1250300 2205000 58602 2184200 2045300 3141600 1840200 1787500 1755500 1480500 1928900 1164600 2057400 169410 2244100 1959600 3111000 1874700 1876600 1795800 1458600 1855300 1 1 1 1 1 1 1 1 1 1 1 2471100 4507400 44688 4651600 2957100 2568900 2232600 3306100 3103200 3062900 3669500 2301200 4206400 253330 4704100 2819900 2762100 2329400 3316900 3139000 3001400 3522300 2 2 2 2 2 2 2 2 2 2 2 821870000 534560000 287300000 8958 1109 8345 47837;47838 57912;57913;57914 57914 3 IILTARPFR Unmodified 1085.6709 0.67094871 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 1 By MS/MS By MS/MS 6.67 0.745 3 2 1 2 4 47.547 47.937 3 2.7034E-06 12801 20211116_3447_TMUAki_TMT10x_S_F8 160.59 113.4 3385300 5447700 29519 5798500 6093700 5883300 3471000 5008200 3881500 3418600 4508100 3152100 5084600 327080 5891900 5777500 5968700 3670600 5088500 3953000 3404300 4329400 3 3 2 3 3 3 3 3 3 3 3 2111000 3267500 29519 3504600 4723300 5104100 2556600 3060500 2415000 2086700 2823500 1965800 3049800 239120 3582400 4476200 5055100 2702200 3185700 2477500 2078100 2711100 2 2 2 2 2 2 2 2 2 2 2 1274200 2180200 0 2293900 1370400 779230 914400 1947700 1466600 1331900 1684600 1186300 2034800 87965 2309500 1301300 913520 968450 1902900 1475500 1326200 1618300 1 1 0 1 1 1 1 1 1 1 1 550080000 368700000 181380000 8959 1730 8346 47839;47840;47841;47842;47843;47844 57915;57916;57917;57918;57919;57920 57920 6 IILTARPFRLDLLEDR Unmodified 1940.1207 0.12073084 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 2 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 71.973 71.819 4 2.3132E-35 23767 20211116_3442_TMUAki_TMT10x_S_F4 207.05 172.62 8072200 12365000 81397 12134000 11737000 10365000 8073500 8539600 6253700 6363500 8583100 7516500 11537000 784020 12369000 11166000 10627000 8324600 8709400 6524300 6304600 8207700 5 5 4 5 5 5 5 5 5 5 5 4627100 6570100 50967 6453700 4271400 7938900 4598400 4876300 3706600 3568700 4787300 4308700 6130200 426140 6614300 4106900 7927200 4619600 5073300 3848200 3539300 4584700 2 2 2 2 2 2 2 2 2 2 2 3445100 5795100 30431 5680300 7465600 2426300 3475200 3663200 2547100 2794800 3795800 3207800 5407100 357890 5754300 7059000 2700300 3704900 3636100 2676200 2765300 3623000 3 3 2 3 3 3 3 3 3 3 3 1983200000 936020000 1047100000 8960 1730 8347 47845;47846;47847 57921;57922;57923;57924;57925 57925 5 IIMYDQNHLLGR Unmodified 1471.7606 0.76056836 2006 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog yes yes 0 0 0 0 By MS/MS 8 0 1 1 54.855 54.972 3 0.0057243 16137 20211116_3436_TMUAki_TMT10x_P_F8 65.295 47.969 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8961 2006 8348 47848 57926 57926 1 IINADSEDPKYIINVK Unmodified 1830.9727 0.9727292 945 P35998 PSMC2 26S protease regulatory subunit 7 yes yes 0 0 0 1 By MS/MS By MS/MS 6.75 0.433 1 3 1 3 62.957 63.289 3 1.8748E-10 20718 20211116_3435_TMUAki_TMT10x_P_F7 125.28 109.89 9949500 16769000 107510 14259000 14695000 18290000 11270000 18078000 17553000 14803000 15186000 9264800 15637000 991550 14785000 14011000 18379000 11805000 18294000 17498000 14592000 14723000 2 2 2 2 2 2 2 2 2 2 2 3675100 6320200 21833 5434600 7511600 11659000 5621800 7326100 7093300 5638800 5796700 3422000 5894100 378770 5699800 7156300 11396000 5846800 7616800 7105900 5576600 5632000 1 1 1 1 1 1 1 1 1 1 1 6274500 10448000 85674 8824900 7183900 6631100 5648300 10752000 10460000 9163800 9389200 5842800 9743400 612780 9084700 6854800 6983300 5958500 10677000 10392000 9015300 9090600 1 1 1 1 1 1 1 1 1 1 1 1105100000 778540000 326550000 8962 945 8349 47849;47850;47851;47852 57927;57928;57929;57930 57927 4 IINDNATYCR Unmodified 1238.5714 0.5713706 103 O00567 NOP56 Nucleolar protein 56 yes yes 0 0 0 0 By MS/MS 4 0 1 1 35.443 35.55 2 9.299E-09 8995 20211116_3442_TMUAki_TMT10x_S_F4 175.93 144.17 194810 342170 2088.7 370850 193240 129920 210490 207960 205700 162690 289140 181380 319390 15789 372700 185690 148970 212460 206140 212440 160760 276340 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 194810 342170 2088.7 370850 193240 129920 210490 207960 205700 162690 289140 181380 319390 15789 372700 185690 148970 212460 206140 212440 160760 276340 2 2 1 2 2 2 2 2 2 2 2 7809000 0 7809000 8963 103 8350 47853 57931;57932 57932 2 IINEPTAAAIAYGLDK Unmodified 1658.8879 0.88793694 615;614 P11142;P11142-2;P54652;P11021 HSPA8;HSPA2;HSPA5 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;78 kDa glucose-regulated protein no no 0 0 0 0 By MS/MS By MS/MS 5.53 1.8 1 4 4 4 6 7 4 15 15 74.467 74.47 2;3 5.6697E-94 24720 20211116_3445_TMUAki_TMT10x_S_F6 353.47 275.32 550230000 866370000 2652200 954070000 505630000 568220000 540170000 258940000 341540000 356990000 540680000 512310000 808740000 43654000 961350000 485600000 595720000 539960000 281810000 363220000 344610000 515410000 34 34 16 34 34 34 34 34 34 34 34 277630000 422110000 1016900 458870000 234860000 349450000 245970000 127240000 167280000 179110000 262790000 258490000 394010000 21130000 463890000 225390000 357760000 246480000 142140000 177010000 172790000 250550000 16 16 6 16 16 16 16 16 16 16 16 272610000 444250000 1635400 495200000 270770000 218770000 294200000 131700000 174260000 177880000 277890000 253830000 414730000 22523000 497460000 260210000 237960000 293480000 139680000 186210000 171830000 264860000 18 18 10 18 18 18 18 18 18 18 18 225480000000 110520000000 114960000000 8964 615;614 8351 47854;47855;47856;47857;47858;47859;47860;47861;47862;47863;47864;47865;47866;47867;47868;47869;47870;47871;47872;47873;47874;47875;47876;47877;47878;47879;47880;47881;47882;47883 57933;57934;57935;57936;57937;57938;57939;57940;57941;57942;57943;57944;57945;57946;57947;57948;57949;57950;57951;57952;57953;57954;57955;57956;57957;57958;57959;57960;57961;57962;57963;57964;57965;57966;57967 57960 35 IINEPTAAAIAYGLDKK Unmodified 1786.9829 0.98289996 615 P11142;P11142-2;P54652 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 6.78 2.07 5 2 2 3 18 33 46 17 67.956 67.97 2;3;4 7.2385E-46 22284 20211116_3436_TMUAki_TMT10x_P_F8 247.79 207.87 244480000 429130000 3025000 316400000 359360000 606040000 332740000 593330000 408540000 445570000 410710000 227650000 400000000 23784000 335070000 344030000 599240000 341250000 599470000 412380000 441250000 396130000 87 87 57 87 87 87 87 87 87 87 87 148670000 250520000 1018800 187800000 187870000 426470000 202450000 341100000 223860000 258140000 238510000 138430000 233530000 13083000 199590000 180520000 417820000 205250000 348630000 227320000 255530000 229630000 63 63 38 63 63 63 63 63 63 63 63 95813000 178610000 2006200 128600000 171490000 179560000 130300000 252230000 184690000 187430000 172200000 89225000 166470000 10701000 135480000 163510000 181420000 136000000 250840000 185060000 185720000 166500000 24 24 19 24 24 24 24 24 24 24 24 183890000000 100340000000 83550000000 8965 615 8352 47884;47885;47886;47887;47888;47889;47890;47891;47892;47893;47894;47895;47896;47897;47898;47899;47900;47901;47902;47903;47904;47905;47906;47907;47908;47909;47910;47911;47912;47913;47914;47915;47916;47917;47918;47919;47920;47921;47922;47923;47924;47925;47926;47927;47928;47929;47930;47931;47932;47933;47934;47935;47936;47937;47938;47939;47940;47941;47942;47943;47944;47945;47946 57968;57969;57970;57971;57972;57973;57974;57975;57976;57977;57978;57979;57980;57981;57982;57983;57984;57985;57986;57987;57988;57989;57990;57991;57992;57993;57994;57995;57996;57997;57998;57999;58000;58001;58002;58003;58004;58005;58006;58007;58008;58009;58010;58011;58012;58013;58014;58015;58016;58017;58018;58019;58020;58021;58022;58023;58024;58025;58026;58027;58028;58029;58030;58031;58032;58033;58034;58035;58036;58037;58038;58039;58040;58041;58042;58043;58044;58045;58046;58047;58048;58049;58050;58051;58052;58053;58054;58055;58056;58057;58058;58059;58060;58061;58062 58023 95 IINEPTAAAIAYGLDKR Unmodified 1814.989 0.98904797 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 1 By MS/MS By MS/MS 5.67 2.67 2 1 1 2 3 5 4 66.913 67.022 2;3 2.4302E-79 21078 20211116_3436_TMUAki_TMT10x_P_F8 323.59 275.15 179240000 305780000 4720900 285340000 245910000 374190000 239380000 319670000 299360000 299750000 278880000 166920000 285250000 19671000 293870000 235880000 374500000 245010000 327170000 301190000 293570000 269660000 14 14 11 14 14 14 14 14 14 14 14 119620000 204630000 3823600 190810000 160650000 297080000 171940000 201250000 194960000 193240000 179540000 111400000 190890000 13843000 197230000 154540000 293940000 174530000 209220000 196790000 189060000 173680000 7 7 5 7 7 7 7 7 7 7 7 59621000 101160000 897300 94528000 85263000 77108000 67442000 118410000 104390000 106510000 99338000 55517000 94365000 5828200 96642000 81340000 80555000 70485000 117950000 104410000 104510000 95985000 7 7 6 7 7 7 7 7 7 7 7 53827000000 29759000000 24068000000 8966 614 8353 47947;47948;47949;47950;47951;47952;47953;47954;47955 58063;58064;58065;58066;58067;58068;58069;58070;58071;58072;58073;58074;58075;58076 58069 14 IINEPTAAAIAYGLDR Unmodified 1686.8941 0.89408495 596;701 P0DMV8;P0DMV9;P0DMV8-2;P17066 HSPA1A;HSPA1B;HSPA6 Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 6 no no 0 0 0 0 By MS/MS By MS/MS 5.29 1.42 3 4 4 4 6 12 9 67.895 67.914 2;3 6.1813E-69 22673 20211116_3434_TMUAki_TMT10x_P_F6 297.54 241.98 87159000 139290000 530220 132360000 109060000 146170000 113520000 104960000 98331000 102410000 116600000 81152000 129950000 7158900 135730000 104670000 147130000 114440000 108720000 101350000 100130000 111910000 29 29 16 29 29 29 29 29 29 29 29 52377000 79832000 261750 76968000 51689000 97993000 62134000 62119000 57405000 59416000 66271000 48765000 74481000 3943600 79036000 49799000 97726000 62333000 64888000 58921000 58140000 63655000 17 17 8 17 17 17 17 17 17 17 17 34783000 59459000 268470 55395000 57374000 48176000 51381000 42842000 40926000 42995000 50327000 32387000 55466000 3215300 56691000 54873000 49404000 52108000 43833000 42426000 41985000 48257000 12 12 8 12 12 12 12 12 12 12 12 60575000000 28957000000 31618000000 8967 596;701 8354 47956;47957;47958;47959;47960;47961;47962;47963;47964;47965;47966;47967;47968;47969;47970;47971;47972;47973;47974;47975;47976 58077;58078;58079;58080;58081;58082;58083;58084;58085;58086;58087;58088;58089;58090;58091;58092;58093;58094;58095;58096;58097;58098;58099;58100;58101;58102;58103;58104;58105 58089 29 IINNTENLVR Unmodified 1184.6513 0.65133548 3335 Q9Y617;Q9Y617-2 PSAT1 Phosphoserine aminotransferase yes no 0 0 0 0 By MS/MS By MS/MS 4.8 0.748 2 2 1 3 2 46.267 46.411 2 6.0798E-14 12914 20211116_3431_TMUAki_TMT10x_P_F4 223.84 166.79 16303000 26988000 277200 30855000 37540000 33137000 22278000 26912000 29841000 23308000 28631000 15181000 25197000 1842000 31238000 35624000 33477000 23629000 27568000 29985000 22913000 27657000 5 5 4 5 5 5 5 5 5 5 5 9420600 15165000 77229 16525000 30435000 26866000 15191000 14584000 16806000 13379000 15813000 8771500 14155000 1081900 16917000 28800000 26456000 16256000 15412000 16991000 13116000 15285000 3 3 2 3 3 3 3 3 3 3 3 6882600 11824000 199970 14330000 7105400 6271300 7087100 12327000 13035000 9929600 12818000 6409800 11042000 760100 14321000 6824600 7021900 7373800 12156000 12993000 9796500 12372000 2 2 2 2 2 2 2 2 2 2 2 1681300000 1064500000 616880000 8968 3335 8355 47977;47978;47979;47980;47981 58106;58107;58108;58109;58110 58106 5 IINPMGLLVEELK Unmodified 1467.8371 0.83708734 2844 Q9H9J2 MRPL44 39S ribosomal protein L44, mitochondrial yes yes 0 0 0 0 By MS/MS 8 0 1 1 81.532 81.529 3 0.00065862 26446 20211116_3447_TMUAki_TMT10x_S_F8 77.644 55.771 713350 1063800 0 1299700 3126200 759780 738320 480820 462410 531410 743740 664080 993490 78286 1301200 2936500 801050 865230 504460 492480 516910 708750 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 713350 1063800 0 1299700 3126200 759780 738320 480820 462410 531410 743740 664080 993490 78286 1301200 2936500 801050 865230 504460 492480 516910 708750 1 1 0 1 1 1 1 1 1 1 1 78173000 0 78173000 8969 2844 8356 47982 58111 58111 1 IIPAIATTTATVSGLVALEMIK Oxidation (M) 2228.2702 0.27015678 5 A0AVT1;A0AVT1-2 UBA6 Ubiquitin-like modifier-activating enzyme 6 yes no 0 0 1 0 By MS/MS 4 0 1 1 82.816 82.809 3 3.3558E-05 28226 20211116_3442_TMUAki_TMT10x_S_F4 73.294 64.693 422470 727280 0 722740 631050 530000 548140 498070 470330 526940 592860 393330 678610 33526 734750 602710 551100 557920 508880 486230 513450 568120 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 422470 727280 0 722740 631050 530000 548140 498070 470330 526940 592860 393330 678610 33526 734750 602710 551100 557920 508880 486230 513450 568120 1 1 0 1 1 1 1 1 1 1 1 59055000 0 59055000 8970 5 8357 47983 58112 58112 4 1 IIPAVASTNAVIAAVCATEVFK Unmodified 2244.2188 0.21878991 2268 Q8TBC4;Q8TBC4-2 UBA3 NEDD8-activating enzyme E1 catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 82.011 82 3 7.6513E-45 27871 20211116_3442_TMUAki_TMT10x_S_F4 208.28 196.84 5988100 9269900 19945 8689500 6955900 8915500 7521700 6443000 5559700 6379100 7439100 5575000 8647600 448170 8909100 6679900 9013000 7539300 6673600 5808600 6232800 7118000 4 4 1 4 4 4 4 4 4 4 4 3562400 5192200 19945 5051900 3425700 6253100 4198100 3672200 2956200 3480600 4305400 3316700 4844400 258930 5181600 3301900 6238100 4179400 3858100 3109600 3407200 4111500 2 2 1 2 2 2 2 2 2 2 2 2425700 4077600 0 3637600 3530200 2662400 3323600 2770800 2603500 2898500 3133700 2258400 3803200 189240 3727500 3378000 2774900 3359800 2815500 2698900 2825600 3006600 2 2 0 2 2 2 2 2 2 2 2 1666800000 540210000 1126500000 8971 2268 8358 47984;47985;47986;47987 58113;58114;58115;58116 58115 4 IIPFLPGK Unmodified 883.55312 0.55312499 9 A1X283;Q5TCZ1;Q5TCZ1-3 SH3PXD2B;SH3PXD2A SH3 and PX domain-containing protein 2B;SH3 and PX domain-containing protein 2A yes no 0 0 0 0 By MS/MS By matching 4 0 2 1 1 74.597 74.56 2 0.0021362 24411 20211116_3431_TMUAki_TMT10x_P_F4 113.25 73.71 4073900 6601300 0 6547600 4720500 7231800 4459700 3908900 3863300 3854900 4808000 3793200 6159500 344840 6693600 4519500 7250400 4518800 4140400 3989900 3767100 4608800 1 1 0 1 1 1 1 1 1 1 1 4073900 6601300 0 6547600 4720500 7231800 4459700 3908900 3863300 3854900 4808000 3793200 6159500 344840 6693600 4519500 7250400 4518800 4140400 3989900 3767100 4608800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 983650000 585110000 398550000 8972 9 8359 47988;47989 58117 58117 1 IIPGADADVVVWDPEATK Unmodified 1894.9676 0.96764382 2617 Q9BPU6 DPYSL5 Dihydropyrimidinase-related protein 5 yes yes 0 0 0 0 By MS/MS 3 0 1 1 78.38 78.295 3 0.0093893 27546 20211116_3430_TMUAki_TMT10x_P_F3 48.314 35.954 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8973 2617 8360 47990 58118 58118 1 IIPGFMCQGGDFTR Oxidation (M) 1613.733 0.73303298 1385 P62937;F5H284;Q9Y536;P0DN26;A0A0B4J2A2;A0A075B767;A0A075B759 PPIA;PPIAL4D;PPIAL4A;PPIAL4C;PPIAL4E Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase A-like 4D;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase yes no 0 0 1 0 By MS/MS By MS/MS 4.76 2.73 6 3 3 4 4 5 13 12 64.587 64.663 2;3 6.7109E-14 19235 20211116_3445_TMUAki_TMT10x_S_F6 142.83 124 97740000 166530000 1422700 159240000 132850000 160990000 115830000 138500000 123270000 126610000 134720000 91013000 155370000 9484900 162990000 127020000 163390000 118610000 141600000 125490000 124140000 129600000 33 33 19 33 33 33 33 33 33 33 33 52770000 84958000 435850 82740000 64936000 109030000 66349000 67890000 60038000 62361000 67380000 49136000 79266000 4763500 84958000 62313000 108530000 67031000 70937000 61615000 61133000 64772000 16 16 9 16 16 16 16 16 16 16 16 44970000 81577000 986880 76496000 67917000 51959000 49477000 70610000 63232000 64247000 67337000 41877000 76101000 4721400 78031000 64702000 54865000 51576000 70660000 63872000 63009000 64831000 17 17 10 17 17 17 17 17 17 17 17 89072000000 48881000000 40191000000 8974 1385 8361 47991;47992;47993;47994;47995;47996;47997;47998;47999;48000;48001;48002;48003;48004;48005;48006;48007;48008;48009;48010;48011;48012;48013;48014;48015 58119;58120;58121;58122;58123;58124;58125;58126;58127;58128;58129;58130;58131;58132;58133;58134;58135;58136;58137;58138;58139;58140;58141;58142;58143;58144;58145;58146;58147;58148;58149;58150;58151;58152;58153;58154;58155;58156 58148 1861 38 IIPGFMCQGGDFTR Unmodified 1597.7381 0.73811836 1385 P62937;F5H284;Q9Y536;P0DN26;A0A0B4J2A2;A0A075B767;A0A075B759 PPIA;PPIAL4D;PPIAL4A;PPIAL4C;PPIAL4E Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase A-like 4D;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase yes no 0 0 0 0 By MS/MS By MS/MS 3.33 2.27 9 13 10 2 1 2 4 4 19 26 57.506 57.446 2;3 2.5514E-37 24983 20211116_3446_TMUAki_TMT10x_S_F7 249.83 235.37 199220000 314990000 3496200 333050000 221270000 197100000 227830000 99098000 72299000 110690000 201830000 185500000 293990000 16977000 336460000 212410000 206970000 225940000 106050000 84954000 107630000 190690000 43 43 18 43 43 43 43 43 43 43 43 74153000 112460000 1739400 118740000 76373000 101460000 88227000 42480000 33641000 46529000 74831000 69053000 104960000 6583100 120440000 73600000 103100000 87183000 46288000 38074000 45275000 70912000 20 20 7 20 20 20 20 20 20 20 20 125070000 202530000 1756800 214310000 144900000 95636000 139610000 56618000 38658000 64160000 127000000 116450000 189030000 10394000 216020000 138800000 103870000 138760000 59760000 46880000 62351000 119780000 23 23 11 23 23 23 23 23 23 23 23 132980000000 71328000000 61652000000 8975 1385 8361 48016;48017;48018;48019;48020;48021;48022;48023;48024;48025;48026;48027;48028;48029;48030;48031;48032;48033;48034;48035;48036;48037;48038;48039;48040;48041;48042;48043;48044;48045;48046;48047;48048;48049;48050;48051;48052;48053;48054;48055;48056;48057;48058;48059;48060 58157;58158;58159;58160;58161;58162;58163;58164;58165;58166;58167;58168;58169;58170;58171;58172;58173;58174;58175;58176;58177;58178;58179;58180;58181;58182;58183;58184;58185;58186;58187;58188;58189;58190;58191;58192;58193;58194;58195;58196;58197;58198;58199;58200;58201;58202;58203;58204;58205;58206;58207;58208;58209;58210 58203 54 IIPKPEFPR Unmodified 1095.6441 0.64406526 2403 Q96A35 MRPL24 39S ribosomal protein L24, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 51.023 50.874 3 0.0061478 14646 20211116_3440_TMUAki_TMT10x_S_F2 67.207 51.451 2958300 4403500 48340 5668200 2458400 2271300 2537200 1847000 1769200 1612300 2925100 2754800 4113600 283310 5642400 2362100 2513800 2545700 1892300 1874500 1584300 2786000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2958300 4403500 48340 5668200 2458400 2271300 2537200 1847000 1769200 1612300 2925100 2754800 4113600 283310 5642400 2362100 2513800 2545700 1892300 1874500 1584300 2786000 1 1 1 1 1 1 1 1 1 1 1 127450000 0 127450000 8976 2403 8362 48061;48062 58211;58212 58212 2 IIPLVVK Unmodified 780.54731 0.54731133 2116 Q86VP6;Q86VP6-2;Q86VP6-3 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 67.256 66.793 2 0.068234 24006 20211116_3441_TMUAki_TMT10x_S_F3 63.642 26.267 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8977 2116 8363 48063 58213 58213 1 IIPLYSTLPPQQQQR Unmodified 1780.9836 0.98356866 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 6 3 3 65.34 64.966 3 3.169E-10 21918 20211116_3430_TMUAki_TMT10x_P_F3 136.99 109.02 6007600 10076000 0 10366000 6657900 6937000 5750200 4746800 4724800 5015800 6425800 5593100 9402600 442830 10503000 6356900 7229200 5848400 4944800 4911900 4887600 6146100 2 2 0 2 2 2 2 2 2 2 2 1700000 2382200 0 2355600 1866700 2965200 2056800 1744400 1786700 1751800 1913900 1582700 2222800 122800 2414100 1793400 2955700 2068000 1835400 1834000 1710600 1842300 1 1 0 1 1 1 1 1 1 1 1 4307600 7693300 0 8010500 4791200 3971800 3693400 3002400 2938200 3264000 4511900 4010500 7179900 320030 8089200 4563500 4273500 3780400 3109400 3078000 3177000 4303700 1 1 0 1 1 1 1 1 1 1 1 1561900000 1165800000 396090000 8978 196 8364 48064;48065;48066;48067;48068;48069 58214;58215;58216;58217 58214 4 IIPPGSGIIHQVNLEYLAR Unmodified 2089.1684 0.16840932 758 P21399 ACO1 Cytoplasmic aconitate hydratase yes yes 0 0 0 0 By MS/MS 2 0 1 1 71.752 71.614 3 2.3462E-08 23066 20211116_3440_TMUAki_TMT10x_S_F2 103.71 88.07 4616100 7705000 144440 6587400 6140300 5426000 6226500 5015700 4665100 5160100 6295400 4299100 7185400 538670 6781800 5898500 5590100 6263000 5124700 4872100 5033700 6022500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4616100 7705000 144440 6587400 6140300 5426000 6226500 5015700 4665100 5160100 6295400 4299100 7185400 538670 6781800 5898500 5590100 6263000 5124700 4872100 5033700 6022500 2 2 2 2 2 2 2 2 2 2 2 289140000 0 289140000 8979 758 8365 48070 58218;58219 58218 2 IIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK Unmodified 4054.0245 0.024513361 1329 P61978-2;P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 0 0 0 0 By MS/MS By MS/MS 6.08 1.21 1 4 3 3 2 8 5 79.618 79.626 3;4;5 2.3667E-24 25925 20211116_3445_TMUAki_TMT10x_S_F6 138.88 135.58 17388000 29008000 165740 29027000 20724000 26049000 21833000 14195000 12713000 16260000 20568000 16190000 27067000 1183500 29566000 19900000 26454000 21806000 15093000 13612000 15795000 19598000 16 16 6 16 16 16 16 16 16 16 16 10475000 16994000 146150 17464000 10135000 18103000 12148000 8309900 7926300 9747000 11981000 9754000 15859000 733830 17792000 9774000 18182000 12086000 8986200 8392300 9460200 11432000 7 7 3 7 7 7 7 7 7 7 7 6913000 12014000 19590 11563000 10589000 7945800 9685800 5885100 4787100 6512600 8587200 6436100 11208000 449720 11774000 10126000 8271500 9720300 6106300 5219200 6334700 8166200 9 9 3 9 9 9 9 9 9 9 9 22442000000 13167000000 9275000000 8980 1329 8366 48071;48072;48073;48074;48075;48076;48077;48078;48079;48080;48081;48082;48083 58220;58221;58222;58223;58224;58225;58226;58227;58228;58229;58230;58231;58232;58233;58234;58235 58232 16 IIPTLEEYQHYK Unmodified 1532.7875 0.78749461 1330 P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes yes 0 0 0 0 By MS/MS By MS/MS 6 1.22 1 2 2 2 1 5 3 62.298 62.564 3 1.9274E-12 18653 20211116_3434_TMUAki_TMT10x_P_F6 174.42 151.19 38829000 64621000 272970 75544000 53415000 67281000 45153000 48780000 51331000 49937000 50608000 36155000 60340000 3592200 76172000 51020000 68635000 46424000 50565000 51924000 48723000 48842000 9 9 6 9 9 9 9 9 9 9 9 23246000 39207000 220020 44729000 39749000 53203000 31591000 29628000 30433000 30031000 29641000 21645000 36605000 2277800 45368000 37916000 53147000 32435000 31325000 30983000 29314000 28618000 6 6 3 6 6 6 6 6 6 6 6 15583000 25414000 52944 30815000 13666000 14078000 13562000 19153000 20898000 19906000 20967000 14509000 23734000 1314400 30804000 13104000 15488000 13989000 19239000 20941000 19410000 20224000 3 3 3 3 3 3 3 3 3 3 3 3737200000 1937200000 1799900000 8981 1330 8367 48084;48085;48086;48087;48088;48089;48090;48091 58236;58237;58238;58239;58240;58241;58242;58243;58244;58245;58246;58247 58240 12 IIQEFLSK Unmodified 976.55933 0.55933258 1027 P43246;P43246-2 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 75.584 75.605 2 0.0026352 24609 20211116_3436_TMUAki_TMT10x_P_F8 107.15 49.977 43420000 67496000 2214700 69568000 46988000 72086000 48368000 43603000 42541000 44604000 51207000 40445000 62989000 5712300 70862000 45223000 72641000 48809000 45800000 43840000 43521000 49130000 5 5 4 5 5 5 5 5 5 5 5 31798000 49217000 2103400 51984000 36499000 61521000 37841000 32861000 31215000 32820000 37229000 29623000 45935000 4662500 52979000 35158000 61441000 38108000 34856000 32260000 32055000 35728000 3 3 3 3 3 3 3 3 3 3 3 11621000 18279000 111230 17584000 10488000 10565000 10527000 10742000 11325000 11784000 13978000 10821000 17054000 1049800 17883000 10064000 11200000 10701000 10944000 11581000 11466000 13402000 2 2 1 2 2 2 2 2 2 2 2 1521700000 1065300000 456420000 8982 1027 8368 48092;48093;48094 58248;58249;58250;58251;58252 58250 5 IIQLLDDYPK Unmodified 1216.6703 0.67033959 508 P05388;P05388-2;Q8NHW5 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 0 0 0 0 By MS/MS By MS/MS 6.19 1.73 1 2 3 4 4 8 9 22 9 64.667 64.715 2;3 3.4397E-14 25071 20211116_3445_TMUAki_TMT10x_S_F6 230.06 167.52 280730000 461100000 1487700 454200000 316180000 409520000 305780000 297400000 259110000 301180000 332920000 261380000 430230000 22442000 463180000 302820000 417420000 309270000 308140000 268260000 294000000 318870000 27 27 12 27 27 27 27 27 27 27 27 132760000 216060000 483850 219920000 156010000 261840000 155840000 140620000 123700000 143880000 155640000 123610000 201620000 10354000 224710000 149530000 261430000 157090000 149190000 128390000 140390000 149150000 18 18 9 18 18 18 18 18 18 18 18 147970000 245040000 1003900 234280000 160160000 147680000 149940000 156780000 135410000 157300000 177280000 137770000 228610000 12088000 238470000 153290000 155990000 152170000 158950000 139880000 153610000 169720000 9 9 3 9 9 9 9 9 9 9 9 39011000000 20996000000 18015000000 8983 508 8369 48095;48096;48097;48098;48099;48100;48101;48102;48103;48104;48105;48106;48107;48108;48109;48110;48111;48112;48113;48114;48115;48116;48117;48118;48119;48120;48121;48122;48123;48124;48125 58253;58254;58255;58256;58257;58258;58259;58260;58261;58262;58263;58264;58265;58266;58267;58268;58269;58270;58271;58272;58273;58274;58275;58276;58277;58278;58279;58280;58281;58282 58278 30 IIQTAQTTPVQTVTIVQQAPLGQHQLPIK Unmodified 3150.7765 0.776483 1480 Q01167;Q01167-2 FOXK2 Forkhead box protein K2 yes no 0 0 0 0 By MS/MS 3 0 1 1 71.023 70.609 4 5.2396E-14 25533 20211116_3441_TMUAki_TMT10x_S_F3 120.08 107.28 1588000 2533400 34250 2516800 1863400 1820500 1418100 1623600 1378000 1755100 1694200 1478800 2363900 167430 2558300 1777600 1893200 1460400 1664700 1414800 1708700 1624500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1588000 2533400 34250 2516800 1863400 1820500 1418100 1623600 1378000 1755100 1694200 1478800 2363900 167430 2558300 1777600 1893200 1460400 1664700 1414800 1708700 1624500 1 1 1 1 1 1 1 1 1 1 1 1118900000 0 1118900000 8984 1480 8370 48126 58283 58283 1 IIQVGNR Unmodified 798.47119 0.47118627 1428 P78347;P78347-2;P78347-4;P78347-3 GTF2I General transcription factor II-I yes no 0 0 0 0 By MS/MS 8 0 1 1 35.217 35.771 2 0.044033 7647 20211116_3447_TMUAki_TMT10x_S_F8 72.355 32.593 1035900 1737300 0 1661400 1009800 876660 1166900 852340 858800 800730 1341100 964470 1620800 81775 1688500 971970 940940 1165900 866290 904280 784160 1278800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1035900 1737300 0 1661400 1009800 876660 1166900 852340 858800 800730 1341100 964470 1620800 81775 1688500 971970 940940 1165900 866290 904280 784160 1278800 1 1 0 1 1 1 1 1 1 1 1 23031000 0 23031000 8985 1428 8371 48127 58284 58284 1 IIRPSETAGR Unmodified 1098.6146 0.61455605 732 P19388 POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1 yes yes 0 0 0 1 By MS/MS 5 0 1 1 29.553 29.485 3 0.071697 6520 20211116_3433_TMUAki_TMT10x_P_F5 41.338 14.953 313910 486730 6135.2 413210 410870 593950 341600 301590 377280 447690 394460 292320 453900 33101 429440 392590 587360 351220 325760 382870 431210 379990 1 1 1 1 1 1 1 1 1 1 1 313910 486730 6135.2 413210 410870 593950 341600 301590 377280 447690 394460 292320 453900 33101 429440 392590 587360 351220 325760 382870 431210 379990 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7020100 7020100 0 8986 732 8372 48128 58285 58285 1 IISAASEGGANVFTVSYFK Unmodified 1959.9942 0.99419293 678 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 2 0 7 3 4 82.573 82.544 2;3 1.86E-40 25739 20211116_3440_TMUAki_TMT10x_S_F2 202.29 180.06 34978000 57453000 151820 54274000 40317000 44752000 39533000 30543000 29370000 34445000 41480000 32568000 53598000 1932000 55450000 38636000 45859000 39827000 31888000 30753000 33480000 39639000 9 9 2 9 9 9 9 9 9 9 9 13002000 21281000 47419 18989000 12462000 22482000 14690000 10959000 10868000 13037000 15033000 12106000 19849000 1035000 19586000 12003000 22429000 14666000 11786000 11372000 12647000 14372000 3 3 1 3 3 3 3 3 3 3 3 21976000 36172000 104400 35284000 27855000 22270000 24843000 19584000 18502000 21408000 26448000 20462000 33749000 896970 35864000 26633000 23430000 25161000 20102000 19382000 20833000 25267000 6 6 1 6 6 6 6 6 6 6 6 6626900000 3425800000 3201200000 8987 678 8373 48129;48130;48131;48132;48133;48134;48135 58286;58287;58288;58289;58290;58291;58292;58293;58294;58295 58289 10 IISESAQMNEFETLTAK Oxidation (M) 1926.9245 0.92445838 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4;Q7Z4S6-6 KIF21A Kinesin-like protein KIF21A yes no 0 0 1 0 By MS/MS 4 0 1 1 66.804 66.891 3 0.0043012 21302 20211116_3431_TMUAki_TMT10x_P_F4 60.541 47.116 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8988 2082 8374 48136 58296 58296 2584 1 IISESAQMNEFETLTAK Unmodified 1910.9295 0.92954376 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4;Q7Z4S6-6 KIF21A Kinesin-like protein KIF21A yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 1 1 1 1 2 75.486 75.437 3 1.7914E-16 27477 20211116_3441_TMUAki_TMT10x_S_F3 144.73 126.13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8989 2082 8374 48137;48138;48139 58297;58298;58299 58298 3 IISIFSGTEK Unmodified 1093.6019 0.60192568 1606 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes yes 0 0 0 0 By MS/MS By MS/MS 5 3.29 2 1 2 1 4 69.429 69.506 2 3.8054E-12 22086 20211116_3436_TMUAki_TMT10x_P_F8 218.04 143.55 22016000 35112000 129400 39559000 27794000 27596000 22808000 22630000 23540000 22310000 28076000 20500000 32780000 2026800 39864000 26532000 28739000 23419000 23250000 24077000 21802000 26943000 4 4 4 4 4 4 4 4 4 4 4 7696700 11263000 43166 14244000 13316000 15475000 9996700 7681300 8811300 7603400 9910500 7166700 10520000 757040 14339000 12687000 15514000 10277000 8200800 9054900 7429100 9526300 1 1 1 1 1 1 1 1 1 1 1 14320000 23850000 86233 25315000 14478000 12121000 12812000 14949000 14729000 14707000 18165000 13334000 22260000 1269800 25524000 13845000 13225000 13142000 15049000 15022000 14373000 17417000 3 3 3 3 3 3 3 3 3 3 3 1488400000 643260000 845190000 8990 1606 8375 48140;48141;48142;48143;48144 58300;58301;58302;58303;58304;58305 58300 6 IISNASCTTNCLAPLAK Unmodified 1832.9125 0.91245391 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS 4.97 3.04 6 8 7 11 11 21 58.79 58.833 2;3;4 1.9148E-47 19513 20211116_3435_TMUAki_TMT10x_P_F7 253.88 218.88 241900000 393020000 1728800 482660000 322450000 380850000 230940000 313880000 270790000 273050000 315500000 225220000 367060000 19820000 484540000 306800000 392760000 240270000 321290000 275330000 268360000 302970000 52 52 22 52 52 52 52 52 52 52 52 120600000 187180000 609980 223100000 247950000 301110000 159820000 147410000 137510000 128970000 160600000 112290000 174790000 10930000 226230000 235480000 298490000 166030000 157090000 141690000 126720000 154210000 21 21 6 21 21 21 21 21 21 21 21 121300000 205840000 1118800 259560000 74499000 79732000 71118000 166470000 133280000 144080000 154900000 112940000 192270000 8890200 258310000 71321000 94267000 74239000 164210000 133630000 141640000 148760000 31 31 16 31 31 31 31 31 31 31 31 175530000000 109940000000 65593000000 8991 489 8376 48145;48146;48147;48148;48149;48150;48151;48152;48153;48154;48155;48156;48157;48158;48159;48160;48161;48162;48163;48164;48165;48166;48167;48168;48169;48170;48171;48172;48173;48174;48175;48176 58306;58307;58308;58309;58310;58311;58312;58313;58314;58315;58316;58317;58318;58319;58320;58321;58322;58323;58324;58325;58326;58327;58328;58329;58330;58331;58332;58333;58334;58335;58336;58337;58338;58339;58340;58341;58342;58343;58344;58345;58346;58347;58348;58349;58350;58351;58352;58353;58354;58355;58356;58357;58358;58359 58317 54 IISNVPADSLIR Unmodified 1296.7402 0.74015049 3135 Q9UIG0;Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B yes no 0 0 0 0 By MS/MS By MS/MS 7 0.756 2 3 2 2 5 63.574 63.77 2 7.0233E-17 18024 20211116_3445_TMUAki_TMT10x_S_F6 214.08 151.52 15821000 27504000 281410 27576000 23022000 30972000 19667000 20486000 20961000 19978000 22532000 14733000 25665000 1662700 28178000 22007000 31107000 20165000 21343000 21323000 19533000 21687000 9 9 6 9 9 9 9 9 9 9 9 10111000 17264000 232010 17514000 16961000 25152000 14320000 13030000 13064000 12806000 14366000 9416400 16110000 1150500 17964000 16211000 24880000 14625000 13853000 13392000 12517000 13818000 2 2 2 2 2 2 2 2 2 2 2 5709800 10240000 49399 10062000 6061400 5820000 5347100 7456000 7896300 7171700 8166000 5316600 9554600 512290 10214000 5796200 6227400 5540000 7489700 7931100 7016000 7869100 7 7 4 7 7 7 7 7 7 7 7 1424900000 662100000 762800000 8992 3135 8377 48177;48178;48179;48180;48181;48182;48183 58360;58361;58362;58363;58364;58365;58366;58367;58368;58369;58370 58363 11 IISSDRDLLAVVFYGTEK Unmodified 2025.0783 0.078256906 647 P12956 XRCC6 X-ray repair cross-complementing protein 6 yes yes 0 0 0 1 By MS/MS By MS/MS 7.8 0.4 1 4 2 3 79.178 79.178 3;4 8.2639E-32 26073 20211116_3436_TMUAki_TMT10x_P_F8 196.31 174.12 60200000 99867000 455070 80868000 64838000 102200000 81540000 72716000 77231000 84754000 75857000 56054000 93116000 5303400 84159000 62606000 102130000 81703000 75781000 78709000 82279000 73219000 6 6 4 6 6 6 6 6 6 6 6 27121000 45745000 145900 34918000 28870000 64980000 35603000 36016000 39984000 42994000 36225000 25253000 42645000 2409000 36836000 27860000 63692000 35897000 38290000 40352000 41702000 35061000 2 2 2 2 2 2 2 2 2 2 2 33079000 54122000 309170 45950000 35968000 37217000 45937000 36700000 37247000 41760000 39632000 30801000 50471000 2894400 47323000 34746000 38441000 45806000 37492000 38357000 40576000 38158000 4 4 2 4 4 4 4 4 4 4 4 14021000000 6865500000 7155500000 8993 647 8378 48184;48185;48186;48187;48188 58371;58372;58373;58374;58375;58376 58371 6 IISSIEQKEENKGGEDK Unmodified 1902.9535 0.95345032 1342 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 0 2 By MS/MS By matching 4.5 0.5 1 1 1 1 49.49 49.66 4 0.026126 14204 20211116_3431_TMUAki_TMT10x_P_F4 46.159 36.875 7742400 10578000 152260 14132000 21370000 12136000 7783500 5761400 6611700 5393500 9458800 7210100 9883700 974660 14136000 20158000 12343000 8569300 6168500 6878600 5282700 9036400 1 1 1 1 1 1 1 1 1 1 1 7742400 10578000 152260 14132000 21370000 12136000 7783500 5761400 6611700 5393500 9458800 7210100 9883700 974660 14136000 20158000 12343000 8569300 6168500 6878600 5282700 9036400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1031600000 501990000 529650000 8994 1342 8379 48189;48190 58377 58377 1 IISTEPLPGRK Unmodified 1209.7081 0.70812208 1893 Q4G0J3;Q4G0J3-3;Q4G0J3-2 LARP7 La-related protein 7 yes no 0 0 0 1 By matching By MS/MS 8 0 2 1 1 41.591 41.768 3 0.00090238 10261 20211116_3447_TMUAki_TMT10x_S_F8 80.834 52.435 977670 1590700 0 1756600 948480 740530 866670 1261200 1391500 1141200 1377500 910150 1484900 61184 1765100 906120 828780 899630 1252400 1392100 1119500 1329300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 977670 1590700 0 1756600 948480 740530 866670 1261200 1391500 1141200 1377500 910150 1484900 61184 1765100 906120 828780 899630 1252400 1392100 1119500 1329300 1 1 0 1 1 1 1 1 1 1 1 118560000 73031000 45530000 8995 1893 8380 48191;48192 58378 58378 1 IISVTCSFFNSQAPTPR Unmodified 1923.9513 0.95128225 57 CON__Q58D62 yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 74.225 74.216 3 6.2206E-12 23492 20211116_3444_TMUAki_TMT10x_S_F5 139.49 113.53 + 41802000 66164000 170650 68803000 49978000 45396000 47436000 29002000 23223000 30494000 44737000 38920000 61748000 3296000 69654000 47839000 47322000 47500000 30359000 25449000 29720000 42491000 5 5 2 5 5 5 5 5 5 5 5 17122000 26364000 58646 27274000 17658000 24298000 19498000 12429000 10094000 12529000 17751000 15942000 24604000 1421100 27715000 16977000 24670000 19390000 13239000 10952000 12233000 16886000 2 2 1 2 2 2 2 2 2 2 2 24681000 39800000 112000 41529000 32320000 21097000 27938000 16573000 13129000 17964000 26987000 22978000 37144000 1874800 41939000 30862000 22651000 28110000 17120000 14496000 17487000 25604000 3 3 1 3 3 3 3 3 3 3 3 946730000 443570000 503160000 8996 57 8381 48193;48194;48195 58379;58380;58381;58382;58383 58382 5 IITEGASILR Unmodified 1071.6288 0.62880913 1545 Q08209;Q08209-2;Q08209-3;Q08209-4 PPP3CA Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform yes no 0 0 0 0 By MS/MS 6 0 1 1 57.123 57.178 2 0.0047458 16768 20211116_3445_TMUAki_TMT10x_S_F6 71.708 43.221 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8997 1545 8382 48196 58384 58384 1 IITEGFEAAK Unmodified 1077.5706 0.57062555 982 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 0 By MS/MS By MS/MS 4.45 0.988 2 4 3 2 6 5 57.346 57.37 2;3 2.0171E-11 17350 20211116_3431_TMUAki_TMT10x_P_F4 214.93 84.658 76785000 114620000 1087500 137720000 123880000 121200000 83640000 89201000 97158000 85289000 102460000 71501000 107040000 7924700 138620000 117820000 123770000 87362000 92191000 98438000 83459000 98672000 10 10 9 10 10 10 10 10 10 10 10 43002000 61288000 463010 73464000 92498000 92775000 54955000 48638000 52577000 46672000 53994000 40041000 57234000 4575500 74374000 87768000 92330000 57633000 51621000 53642000 45663000 52043000 6 6 5 6 6 6 6 6 6 6 6 33783000 53332000 624520 64258000 31378000 28420000 28685000 40563000 44582000 38617000 48462000 31460000 49805000 3349200 64246000 30056000 31436000 29729000 40570000 44796000 37795000 46630000 4 4 4 4 4 4 4 4 4 4 4 9153500000 5351300000 3802200000 8998 982 8383 48197;48198;48199;48200;48201;48202;48203;48204;48205;48206;48207 58385;58386;58387;58388;58389;58390;58391;58392;58393;58394;58395 58386 11 IITHPNFNGNTLDNDIMLIK Oxidation (M) 2298.1678 0.16781697 33 CON__P00761 yes yes 0 0 1 0 By MS/MS By MS/MS 7 0.707 1 2 1 3 1 69.513 69.711 3 2.032E-07 22138 20211116_3436_TMUAki_TMT10x_P_F8 99.413 82.131 + 11663000 21855000 20413 19338000 16985000 27967000 15760000 19246000 17758000 17905000 19073000 10859000 20383000 695830 20035000 16254000 27763000 16112000 19968000 18025000 17542000 18358000 5 5 1 5 5 5 5 5 5 5 5 8476100 15704000 20413 13418000 12312000 23620000 11859000 13332000 13059000 12475000 12928000 7892100 14645000 440300 14002000 11795000 23202000 12090000 14049000 13228000 12219000 12475000 4 4 1 4 4 4 4 4 4 4 4 3186800 6150400 0 5920600 4672900 4347400 3900100 5914000 4698500 5430500 6145400 2967000 5738100 255520 6032700 4459300 4561100 4021200 5919400 4796300 5323600 5883500 1 1 0 1 1 1 1 1 1 1 1 5930100000 3986800000 1943400000 8999 33 8384 48208;48209;48210;48211 58396;58397;58398;58399;58400 58399 16 5 IITHPNFNGNTLDNDIMLIK Unmodified 2282.1729 0.17290235 33 CON__P00761 yes yes 0 0 0 0 By MS/MS 7 0 1 1 73.394 73.674 3 2.3261E-24 25130 20211116_3435_TMUAki_TMT10x_P_F7 160.55 143.83 + 6371400 11636000 73568 12286000 9725400 12096000 9340600 3886100 3155400 4701600 7776600 5932800 10860000 627980 12485000 9318900 12150000 9303300 4389900 3644700 4558200 7358800 2 2 1 2 2 2 2 2 2 2 2 6371400 11636000 73568 12286000 9725400 12096000 9340600 3886100 3155400 4701600 7776600 5932800 10860000 627980 12485000 9318900 12150000 9303300 4389900 3644700 4558200 7358800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1353400000 1353400000 0 9000 33 8384 48212 58401;58402 58401 2 IITITGTQDQIQNAQYLLQNSVK Unmodified 2588.381 0.38098087 1329;1330 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 0 By MS/MS By MS/MS 2.9 1.34 3 9 25 1 2 12 28 59.632 59.559 2;3;4 7.5076E-117 27320 20211116_3429_TMUAki_TMT10x_P_F2 354.04 319.66 111460000 185940000 1205000 173240000 122040000 160100000 150800000 99633000 104060000 118390000 135910000 103770000 173450000 8813000 177430000 117710000 162550000 150020000 104910000 109040000 114850000 130120000 58 58 37 58 58 58 58 58 58 58 58 42714000 67879000 927970 63570000 39795000 75480000 52276000 38543000 41499000 45443000 50319000 39776000 63322000 4216400 65334000 38517000 75330000 52039000 41258000 43003000 44097000 48268000 10 10 9 10 10 10 10 10 10 10 10 68746000 118060000 277010 109670000 82248000 84621000 98529000 61091000 62562000 72947000 85590000 63999000 110130000 4596600 112100000 79189000 87223000 97977000 63655000 66037000 70755000 81853000 48 48 28 48 48 48 48 48 48 48 48 68474000000 37717000000 30758000000 9001 1329;1330 8385 48213;48214;48215;48216;48217;48218;48219;48220;48221;48222;48223;48224;48225;48226;48227;48228;48229;48230;48231;48232;48233;48234;48235;48236;48237;48238;48239;48240;48241;48242;48243;48244;48245;48246;48247;48248;48249;48250;48251;48252 58403;58404;58405;58406;58407;58408;58409;58410;58411;58412;58413;58414;58415;58416;58417;58418;58419;58420;58421;58422;58423;58424;58425;58426;58427;58428;58429;58430;58431;58432;58433;58434;58435;58436;58437;58438;58439;58440;58441;58442;58443;58444;58445;58446;58447;58448;58449;58450;58451;58452;58453;58454;58455;58456;58457;58458;58459;58460;58461;58462;58463;58464 58409 62 IITLAGPTNAIFK Unmodified 1357.7969 0.79693709 1792 Q15366;Q15366-6;Q15366-3;Q15366-2;Q15366-4;Q15366-5;Q15366-7;Q15366-8 PCBP2 Poly(rC)-binding protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.62 0.992 1 3 2 2 3 5 77.114 77.056 2;3 1.007E-35 25881 20211116_3442_TMUAki_TMT10x_S_F4 261.35 219.91 25752000 43727000 65952 41759000 21706000 25765000 24230000 25890000 27633000 26365000 31834000 23978000 40794000 2139800 42501000 20880000 27237000 24551000 26331000 28112000 25730000 30579000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25752000 43727000 65952 41759000 21706000 25765000 24230000 25890000 27633000 26365000 31834000 23978000 40794000 2139800 42501000 20880000 27237000 24551000 26331000 28112000 25730000 30579000 1 1 1 1 1 1 1 1 1 1 1 5080300000 0 5080300000 9002 1792 8386 48253;48254;48255;48256;48257;48258;48259;48260 58465;58466;58467;58468;58469;58470;58471;58472 58470 8 IITLTGPTNAIFK Unmodified 1387.8075 0.80750177 1791 Q15365 PCBP1 Poly(rC)-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.806 1 4 4 1 5 5 76.92 76.876 2;3 2.3045E-65 25802 20211116_3442_TMUAki_TMT10x_S_F4 330.68 231.24 75233000 130610000 138830 115790000 79748000 131870000 86093000 90772000 96748000 88059000 97419000 70046000 121810000 5893200 119410000 76599000 132420000 87326000 94283000 97982000 86115000 93956000 8 8 3 8 8 8 8 8 8 8 8 50389000 83001000 124830 73803000 56916000 101020000 57278000 58849000 63003000 55887000 62664000 46915000 77415000 3952700 76348000 54562000 100290000 58258000 61873000 63832000 54704000 60460000 5 5 2 5 5 5 5 5 5 5 5 24844000 47605000 14003 41984000 22832000 30843000 28815000 31923000 33745000 32172000 34755000 23132000 44399000 1940500 43061000 22037000 32132000 29068000 32410000 34150000 31411000 33496000 3 3 1 3 3 3 3 3 3 3 3 16625000000 10065000000 6560800000 9003 1791 8387 48261;48262;48263;48264;48265;48266;48267;48268;48269;48270 58473;58474;58475;58476;58477;58478;58479;58480;58481;58482 58482 10 IIVDELKQEVISTSSK Unmodified 1787.988 0.98804492 1405 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 6.39 1.52 1 2 2 5 7 6 15 8 67.889 67.894 2;3;4 1.4534E-42 27135 20211116_3446_TMUAki_TMT10x_S_F7 219.95 184.06 389830000 675550000 4666500 642030000 461250000 569600000 408660000 457130000 435920000 448450000 499060000 362990000 630240000 34760000 656260000 441040000 582210000 418110000 470190000 444520000 438340000 479470000 23 23 11 23 23 23 23 23 23 23 23 170440000 285410000 2941900 269810000 223160000 360430000 203780000 199070000 190960000 195810000 214150000 158710000 266260000 16925000 277710000 213620000 357970000 207320000 210450000 195650000 191370000 205870000 13 13 7 13 13 13 13 13 13 13 13 219400000 390140000 1724500 372220000 238090000 209170000 204880000 258050000 244960000 252650000 284910000 204270000 363980000 17836000 378560000 227420000 224240000 210790000 259740000 248860000 246970000 273600000 10 10 4 10 10 10 10 10 10 10 10 64400000000 32255000000 32145000000 9004 1405 8388 48271;48272;48273;48274;48275;48276;48277;48278;48279;48280;48281;48282;48283;48284;48285;48286;48287;48288;48289;48290;48291;48292;48293 58483;58484;58485;58486;58487;58488;58489;58490;58491;58492;58493;58494;58495;58496;58497;58498;58499;58500;58501;58502;58503;58504;58505;58506;58507;58508 58505 26 IIVDTYGGWGAHGGGAFSGK Unmodified 1948.9432 0.94316041 885 P31153;P31153-2;Q00266 MAT2A;MAT1A S-adenosylmethionine synthase isoform type-2;S-adenosylmethionine synthase isoform type-1 yes no 0 0 0 0 By MS/MS 1 0 1 1 62.749 62.749 3 5.4073E-09 19235 20211116_3428_TMUAki_TMT10x_P_F1 105.79 88.085 4400800 7458900 0 8111900 6399600 8122200 5718100 4277400 3859700 4340500 5420700 4097000 6962400 324110 8229500 6114700 8187300 5778300 4544900 4063300 4236600 5180900 1 1 0 1 1 1 1 1 1 1 1 4400800 7458900 0 8111900 6399600 8122200 5718100 4277400 3859700 4340500 5420700 4097000 6962400 324110 8229500 6114700 8187300 5778300 4544900 4063300 4236600 5180900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 488520000 488520000 0 9005 885 8389 48294 58509 58509 1 IIVEKPFGR Unmodified 1057.6284 0.6284152 626 P11413;P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 1 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 49.256 49.13 3 0.00036124 13659 20211116_3428_TMUAki_TMT10x_P_F1 115.06 76.305 9789400 14591000 93039 14765000 19322000 19267000 12135000 14757000 15197000 13343000 14630000 9115600 13616000 1023900 15118000 18351000 19249000 12780000 15189000 15306000 13089000 14131000 4 4 3 4 4 4 4 4 4 4 4 7781300 11234000 57251 11436000 16823000 17043000 9901400 11713000 12079000 10442000 11634000 7245500 10483000 817150 11736000 15960000 16897000 10473000 12140000 12177000 10250000 11236000 3 3 2 3 3 3 3 3 3 3 3 2008100 3357500 35789 3328800 2498600 2224200 2233600 3044200 3118000 2901100 2996300 1870000 3132800 206710 3381400 2391300 2352500 2306800 3049500 3129000 2839300 2894100 1 1 1 1 1 1 1 1 1 1 1 1033000000 805390000 227600000 9006 626 8390 48295;48296;48297 58510;58511;58512;58513 58510 4 IIVLGLLPR Unmodified 992.67464 0.67463711 1420 P68402 PAFAH1B2 Platelet-activating factor acetylhydrolase IB subunit beta yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 78.261 78.311 2 0.00052672 27569 20211116_3446_TMUAki_TMT10x_S_F7 119.56 119.56 8092800 13973000 0 12923000 9346600 11890000 9758500 7662200 7515900 8895200 9659600 7534700 13034000 622500 13243000 8968000 12081000 9807500 8040600 7820400 8636700 9251900 2 2 0 2 2 2 2 2 2 2 2 3615200 6064100 0 5714200 4264600 7344800 4286400 3584100 3364800 3983000 4347500 3365700 5657100 261360 5878500 4086600 7297400 4318200 3845800 3498300 3873600 4163400 1 1 0 1 1 1 1 1 1 1 1 4477600 7908900 0 7209200 5081900 4544800 5472100 4078100 4151200 4912200 5312100 4168900 7377300 361140 7364200 4881400 4783800 5489300 4194800 4322100 4763200 5088400 1 1 0 1 1 1 1 1 1 1 1 1041100000 509350000 531720000 9007 1420 8391 48298;48299 58514;58515 58515 2 IIWELIK Unmodified 913.56369 0.56368968 364 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 2.5 3 2 1 4 2 79.318 79.302 2 0.0064509 26036 20211116_3428_TMUAki_TMT10x_P_F1 108.09 33.344 4092300 6580600 128610 6528700 4828800 6706200 5722200 2959300 2563000 3470900 4436900 3811300 6140200 469450 6666700 4660300 6736700 5659700 3213300 2812100 3368800 4222100 1 1 1 1 1 1 1 1 1 1 1 4092300 6580600 128610 6528700 4828800 6706200 5722200 2959300 2563000 3470900 4436900 3811300 6140200 469450 6666700 4660300 6736700 5659700 3213300 2812100 3368800 4222100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 726150000 726150000 0 9008 364 8392 48300;48301;48302;48303;48304;48305 58516;58517;58518;58519;58520 58516 5 IIYGGSVTGATCK Unmodified 1325.6649 0.66493664 1271 P60174;P60174-1;P60174-4 TPI1 Triosephosphate isomerase yes no 0 0 0 0 By MS/MS By MS/MS 4.22 3.39 4 1 4 4 5 49.572 49.505 2;3 3.4795E-36 13769 20211116_3428_TMUAki_TMT10x_P_F1 271.62 223.34 23153000 38081000 508620 44344000 45696000 35077000 25414000 29019000 29675000 23596000 34633000 21560000 35557000 2597800 44658000 43330000 36170000 26971000 29648000 30179000 23269000 33255000 10 10 7 10 10 10 10 10 10 10 10 10587000 17053000 105470 18804000 33154000 25598000 14478000 12293000 12413000 10053000 14566000 9858000 15919000 1219000 19161000 31322000 25359000 15598000 13104000 12795000 9910600 13985000 4 4 2 4 4 4 4 4 4 4 4 12566000 21027000 403150 25541000 12543000 9479100 10936000 16725000 17262000 13543000 20066000 11702000 19638000 1378800 25497000 12008000 10810000 11373000 16544000 17384000 13358000 19270000 6 6 5 6 6 6 6 6 6 6 6 4144000000 2725300000 1418800000 9009 1271 8393 48306;48307;48308;48309;48310;48311;48312;48313;48314 58521;58522;58523;58524;58525;58526;58527;58528;58529;58530;58531 58521 11 IKADPDGPEAQAEACSGER Unmodified 1999.8905 0.89053249 2997 Q9NX24 NHP2 H/ACA ribonucleoprotein complex subunit 2 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 35.403 35.257 3 1.3251E-31 11055 20211116_3441_TMUAki_TMT10x_S_F3 190.67 186.22 3517900 5098800 44580 8381700 13980000 8517900 4757600 5363200 7803900 3421300 6292300 3275600 4770000 443410 8320900 13173000 8598200 5402300 5554000 7752200 3421500 6116800 8 8 5 8 8 8 8 8 8 8 8 2324000 3211700 24250 5176500 12973000 7673800 3724900 3390400 5074900 2200400 3865600 2163800 3004200 333770 5179500 12206000 7567300 4303600 3627700 5060800 2198100 3766500 5 5 3 5 5 5 5 5 5 5 5 1193900 1887100 20331 3205200 1007200 844130 1032700 1972800 2729000 1220900 2426700 1111800 1765800 109630 3141400 967220 1030900 1098700 1926300 2691400 1223400 2350300 3 3 2 3 3 3 3 3 3 3 3 493570000 381180000 112390000 9010 2997 8394 48315;48316;48317 58532;58533;58534;58535;58536;58537;58538;58539 58539 8 IKAEYEGDGIPTVFVAVAGR Unmodified 2091.1001 0.10005498 767 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 0 1 By MS/MS By MS/MS 6.25 1.48 1 2 1 3 6 3 9 7 71.589 71.714 2;3;4 9.8059E-69 24125 20211116_3446_TMUAki_TMT10x_S_F7 254.72 224.91 84630000 140980000 446960 132540000 95835000 131950000 106760000 86329000 78955000 86894000 102020000 78795000 131520000 6747300 135800000 92138000 133430000 106860000 90092000 82358000 84842000 97704000 18 18 9 18 18 18 18 18 18 18 18 52773000 85530000 155550 81129000 53951000 97104000 66364000 53151000 48112000 54113000 61471000 49132000 79792000 3820000 83314000 52006000 96950000 66102000 56287000 50218000 52810000 58886000 11 11 4 11 11 11 11 11 11 11 11 31856000 55453000 291410 51412000 41884000 34843000 40394000 33178000 30843000 32781000 40552000 29663000 51729000 2927300 52487000 40132000 36481000 40755000 33805000 32140000 32032000 38818000 7 7 5 7 7 7 7 7 7 7 7 18172000000 9567300000 8604600000 9011 767 8395 48318;48319;48320;48321;48322;48323;48324;48325;48326;48327;48328;48329;48330;48331;48332;48333 58540;58541;58542;58543;58544;58545;58546;58547;58548;58549;58550;58551;58552;58553;58554;58555;58556;58557;58558;58559 58559 20 IKAPGFAHLAGLDK Unmodified 1436.814 0.81398414 318 O75306;O75306-2 NDUFS2 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 53.937 53.661 4 0.0011015 18628 20211116_3441_TMUAki_TMT10x_S_F3 75.764 59.873 4050800 6458100 6347.9 5771100 5241100 6192000 4056000 4520600 4309100 3906000 4766100 3771600 6023500 338220 5942300 4994700 6244500 4184000 4662200 4388900 3840200 4583500 2 2 1 2 2 2 2 2 2 2 2 2526300 3837400 6347.9 3455300 3747400 4719300 2720100 2739400 2683600 2359600 2860600 2352300 3579300 232470 3570900 3567800 4685200 2811700 2873800 2738000 2320200 2754100 1 1 1 1 1 1 1 1 1 1 1 1524400 2620700 0 2315800 1493700 1472800 1336000 1781200 1625500 1546400 1905400 1419200 2444200 105760 2371400 1426900 1559300 1372300 1788400 1650900 1520000 1829400 1 1 0 1 1 1 1 1 1 1 1 650530000 276840000 373700000 9012 318 8396 48334;48335;48336 58560;58561 58561 2 IKDAFDRNPELQNLLLDDFFK Unmodified 2550.3118 0.31183867 1170 P52209;P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 2 By MS/MS By MS/MS 6 1.41 2 2 2 2 2 5 5 79.053 79.058 4 3.3795E-26 26012 20211116_3436_TMUAki_TMT10x_P_F8 169.84 147.97 92856000 150720000 1704400 118860000 101290000 143490000 123180000 87177000 68193000 92986000 111720000 86470000 140520000 8346700 123880000 97764000 143390000 122100000 91652000 73325000 90575000 106420000 12 12 9 12 12 12 12 12 12 12 12 48754000 76779000 862450 59838000 47697000 90505000 59295000 47244000 37589000 49915000 59465000 45401000 71580000 3944600 62700000 46077000 89337000 58867000 50298000 39967000 48639000 56687000 6 6 5 6 6 6 6 6 6 6 6 44102000 73941000 841960 59022000 53593000 52985000 63884000 39933000 30604000 43071000 52253000 41069000 68939000 4402100 61176000 51686000 54057000 63232000 41354000 33359000 41936000 49736000 6 6 4 6 6 6 6 6 6 6 6 26462000000 13427000000 13035000000 9013 1170 8397 48337;48338;48339;48340;48341;48342;48343;48344;48345;48346 58562;58563;58564;58565;58566;58567;58568;58569;58570;58571;58572;58573 58567 12 IKDDGPSQSESATETAMTLPSESR Unmodified 2536.1599 0.15989064 2839 Q9H9A6 LRRC40 Leucine-rich repeat-containing protein 40 yes yes 0 0 0 1 By MS/MS 4 0 1 1 47.418 47.591 3 5.8036E-46 13812 20211116_3442_TMUAki_TMT10x_S_F4 203.25 187.99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9014 2839 8398 48347 58574 58574 1 IKDLSTVEALQNLK Unmodified 1570.893 0.89302232 2666 Q9BTT0;Q9BTT0-3 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E yes no 0 0 0 1 By MS/MS By MS/MS 6 2.92 2 2 4 4 4 67.215 67.312 3;4 1.5897E-23 21131 20211116_3436_TMUAki_TMT10x_P_F8 188.19 151.8 84330000 164370000 1084200 98129000 162270000 239540000 155570000 227360000 194150000 198250000 171730000 78526000 153130000 8842900 106900000 155480000 235030000 159340000 230910000 195030000 194820000 166360000 14 14 10 14 14 14 14 14 14 14 14 41826000 81926000 598670 46000000 87872000 170250000 100530000 124870000 105730000 105020000 87735000 38948000 76312000 4600100 51323000 84606000 164750000 101470000 128650000 106700000 103390000 85192000 7 7 5 7 7 7 7 7 7 7 7 42504000 82448000 485580 52128000 74401000 69289000 55035000 102500000 88416000 93223000 84000000 39577000 76819000 4242800 55578000 70870000 70275000 57871000 102260000 88331000 91429000 81168000 7 7 5 7 7 7 7 7 7 7 7 13797000000 8009500000 5787200000 9015 2666 8399 48348;48349;48350;48351;48352;48353;48354;48355 58575;58576;58577;58578;58579;58580;58581;58582;58583;58584;58585;58586;58587;58588 58579 14 IKEENFVSPK Unmodified 1189.6343 0.63428844 86 O00425;O00425-2 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes no 0 0 0 1 By MS/MS 6 0 1 1 43.327 43.38 3 0.0063277 10795 20211116_3434_TMUAki_TMT10x_P_F6 63.727 29.349 1123900 1749100 0 2037200 3139700 2841200 1607900 1633900 1879100 1486600 1619400 1046400 1633200 103070 2069900 2970800 2817700 1719400 1717800 1890600 1457900 1570200 1 1 0 1 1 1 1 1 1 1 1 1123900 1749100 0 2037200 3139700 2841200 1607900 1633900 1879100 1486600 1619400 1046400 1633200 103070 2069900 2970800 2817700 1719400 1717800 1890600 1457900 1570200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 156870000 156870000 0 9016 86 8400 48356 58589 58589 1 IKEEYISQEDAK Unmodified 1451.7144 0.71438925 3404 yes no 0 0 0 1 By MS/MS By matching 7 0 3 2 1 14.344 14.384 3 0.075837 2569 20211116_3435_TMUAki_TMT10x_P_F7 38.634 8.3028 + 92762 142410 0 134740 106480 157840 115100 81755 68821 83958 118740 86370 132850 0 138350 102320 157670 114870 87029 73810 81907 112990 2 2 0 2 2 2 2 2 2 2 2 92762 142410 0 134740 106480 157840 115100 81755 68821 83958 118740 86370 132850 0 138350 102320 157670 114870 87029 73810 81907 112990 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19298000 17679000 1619500 9017 3404 8401 48357;48358;48359 58590 58590 1 IKEIAVTVK Unmodified 999.63283 0.63283187 2609 Q99832;Q99832-3;Q99832-4 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 1 By MS/MS 8 0 1 1 49.015 48.915 3 1.3849E-05 13187 20211116_3447_TMUAki_TMT10x_S_F8 110.08 61.096 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9018 2609 8402 48360 58591 58591 1 IKFPLPHR Unmodified 1006.6076 0.60762018 1495 Q02543 RPL18A 60S ribosomal protein L18a yes yes 0 0 0 1 By MS/MS By MS/MS 4.62 1.11 2 1 3 2 4 4 40.4 40.423 3;4 0.0027895 10886 20211116_3433_TMUAki_TMT10x_P_F5 95.741 49.789 11167000 18149000 132340 20077000 32191000 28157000 14964000 16971000 16637000 13738000 16675000 10398000 16942000 1238200 20466000 30434000 27935000 16131000 17723000 16854000 13550000 16084000 10 10 7 10 10 10 10 10 10 10 10 10578000 17195000 127890 19044000 31569000 27681000 14494000 16037000 15733000 13027000 15772000 9849600 16051000 1196600 19426000 29843000 27405000 15633000 16803000 15953000 12847000 15214000 8 8 6 8 8 8 8 8 8 8 8 588570 954660 4444.8 1032800 621290 476330 470560 934440 904400 710730 902330 547950 891090 41570 1039700 591430 529870 498620 920260 901010 703350 870510 2 2 1 2 2 2 2 2 2 2 2 1754300000 1234800000 519510000 9019 1495 8403 48361;48362;48363;48364;48365;48366;48367;48368 58592;58593;58594;58595;58596;58597;58598;58599;58600;58601;58602 58598 11 IKGEHPGLSIGDVAK Unmodified 1519.8358 0.83584179 574 P09429;B2RPK0 HMGB1;HMGB1P1 High mobility group protein B1;Putative high mobility group protein B1-like 1 yes no 0 0 0 1 By MS/MS By MS/MS 5.71 1.93 1 1 1 2 3 3 7 3 9 12 42.321 42.512 3;4;5 5.1961E-15 12698 20211116_3446_TMUAki_TMT10x_S_F7 158.45 127.56 93662000 134020000 1228400 170930000 202960000 168400000 107540000 122180000 142060000 107930000 135820000 87217000 125190000 10268000 171730000 192280000 170670000 115140000 126130000 142790000 106000000 131220000 33 33 25 33 33 33 33 33 33 33 33 53668000 71929000 804550 95018000 168860000 134410000 71695000 68378000 82174000 62118000 74375000 49976000 67203000 6763700 95892000 159510000 133020000 78128000 72667000 82862000 60925000 71988000 13 13 10 13 13 13 13 13 13 13 13 39994000 62094000 423900 75908000 34106000 33985000 35847000 53803000 59882000 45813000 61449000 37241000 57992000 3504500 75836000 32771000 37652000 37014000 53464000 59923000 45073000 59230000 20 20 15 20 20 20 20 20 20 20 20 33412000000 25631000000 7781500000 9020 574 8404 48369;48370;48371;48372;48373;48374;48375;48376;48377;48378;48379;48380;48381;48382;48383;48384;48385;48386;48387;48388;48389 58603;58604;58605;58606;58607;58608;58609;58610;58611;58612;58613;58614;58615;58616;58617;58618;58619;58620;58621;58622;58623;58624;58625;58626;58627;58628;58629;58630;58631;58632;58633;58634;58635 58631 33 IKGEHPGLSIGDVAKK Unmodified 1647.9308 0.93080481 574 P09429;B2RPK0 HMGB1;HMGB1P1 High mobility group protein B1;Putative high mobility group protein B1-like 1 yes no 0 0 0 2 By MS/MS By MS/MS 4.62 3.16 2 2 1 3 4 4 41.798 41.845 4;5 1.205E-10 10232 20211116_3447_TMUAki_TMT10x_S_F8 132.59 120.9 21298000 32877000 431080 37585000 62696000 45612000 28128000 32073000 39916000 27437000 35682000 19832000 30695000 2436600 38131000 59253000 45667000 30704000 33154000 39942000 26987000 34552000 9 9 7 9 9 9 9 9 9 9 9 13908000 21718000 372160 24723000 54976000 38958000 20792000 21831000 27966000 18545000 24159000 12951000 20277000 1817200 25222000 51860000 38424000 23100000 22962000 28001000 18247000 23423000 4 4 3 4 4 4 4 4 4 4 4 7390300 11159000 58922 12862000 7720600 6654300 7335700 10242000 11950000 8892000 11523000 6881100 10418000 619420 12909000 7393300 7242500 7603900 10192000 11940000 8740000 11129000 5 5 4 5 5 5 5 5 5 5 5 5875600000 4246300000 1629200000 9021 574 8405 48390;48391;48392;48393;48394;48395;48396;48397 58636;58637;58638;58639;58640;58641;58642;58643;58644 58643 9 IKIIAPPER Unmodified 1035.6441 0.64406526 1276;1406;1414;1911 P60709;P63261;P68133;P68032;P62736;P63267;P63267-2;Q562R1 ACTB;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2 no no 0 0 0 1 By MS/MS By MS/MS 4.67 2.91 2 2 1 2 2 5 4 42.288 42.33 3 0.0004146 10864 20211116_3428_TMUAki_TMT10x_P_F1 112.13 68.822 7850100 16813000 141880 8129000 28754000 42083000 18521000 50105000 40430000 36471000 24461000 7308800 15655000 893530 9414000 27310000 40958000 20000000 50131000 39605000 36181000 24091000 8 8 6 8 8 8 8 8 8 8 8 4688300 10436000 83172 4361800 22515000 33433000 14222000 28950000 31097000 23081000 16887000 4364400 9715400 533590 5313500 21373000 32165000 15382000 29485000 30394000 22784000 16730000 4 4 2 4 4 4 4 4 4 4 4 3161800 6376300 58709 3767200 6238600 8650200 4299500 21155000 9332700 13390000 7574100 2944400 5940000 359940 4100400 5936700 8792100 4618400 20645000 9211800 13397000 7360900 4 4 4 4 4 4 4 4 4 4 4 3571000000 2475700000 1095300000 9022 1276;1406;1414;1911 8406 48398;48399;48400;48401;48402;48403;48404;48405;48406 58645;58646;58647;58648;58649;58650;58651;58652;58653 58645 9 IKLEAER Unmodified 857.49707 0.49706667 1107 P49591 SARS Serine--tRNA ligase, cytoplasmic yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 32.642 32.696 3 0.029261 8020 20211116_3433_TMUAki_TMT10x_P_F5 66.299 8.7091 1842200 2950500 52544 3187600 2926300 3748700 2763300 1828200 2093700 2035900 2488300 1715700 2754000 216890 3243600 2805000 3741100 2790700 1962000 2173300 1979900 2388200 3 3 3 3 3 3 3 3 3 3 3 1242200 1910900 46884 2157500 2283900 3060200 1921800 1340300 1475800 1396200 1701200 1156900 1784000 161270 2197000 2183600 3023200 1954400 1451200 1528900 1361300 1634100 1 1 1 1 1 1 1 1 1 1 1 600060 1039600 5660.4 1030200 642420 688500 841520 487910 617840 639730 787070 558760 970040 55618 1046500 621330 717970 836250 510740 644340 618540 754020 2 2 2 2 2 2 2 2 2 2 2 75655000 59255000 16400000 9023 1107 8407 48407;48408;48409 58654;58655;58656;58657 58655 4 IKLEAERFENLR Unmodified 1516.8362 0.83617614 1107 P49591 SARS Serine--tRNA ligase, cytoplasmic yes yes 0 0 0 2 By MS/MS By MS/MS 6.56 0.831 1 3 4 1 4 5 48.014 48.3 3;4 1.5195E-16 13140 20211116_3445_TMUAki_TMT10x_S_F6 206.18 182.96 40132000 65679000 345260 75931000 77683000 84193000 47554000 74793000 68072000 65609000 70940000 37367000 61324000 3906000 76861000 73732000 85050000 50447000 76244000 68455000 64455000 68344000 12 12 9 12 12 12 12 12 12 12 12 19598000 30090000 83512 35152000 54019000 62802000 29602000 36031000 33477000 31291000 33149000 18247000 28096000 2008300 35917000 51176000 61671000 31423000 37843000 33876000 30756000 31988000 6 6 4 6 6 6 6 6 6 6 6 20533000 35589000 261750 40779000 23664000 21391000 17952000 38762000 34595000 34317000 37791000 19120000 33228000 1897700 40945000 22556000 23378000 19024000 38401000 34579000 33699000 36356000 6 6 5 6 6 6 6 6 6 6 6 6167700000 3273100000 2894600000 9024 1107 8408 48410;48411;48412;48413;48414;48415;48416;48417;48418 58658;58659;58660;58661;58662;58663;58664;58665;58666;58667;58668;58669 58664 12 IKLEGIITR Unmodified 1041.6546 0.65462995 3219 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 1 By MS/MS By MS/MS 3.25 2.77 1 2 1 2 2 50.433 50.433 3 0.0073116 14230 20211116_3428_TMUAki_TMT10x_P_F1 63.408 40.503 4561100 6408000 10888 7274200 7971200 7820500 5405400 4641400 5495500 4694400 5526300 4246700 5982600 405320 7367800 7577300 7861900 5619800 4881100 5587800 4582600 5330000 2 2 1 2 2 2 2 2 2 2 2 4561100 6408000 10888 7274200 7971200 7820500 5405400 4641400 5495500 4694400 5526300 4246700 5982600 405320 7367800 7577300 7861900 5619800 4881100 5587800 4582600 5330000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 552650000 552650000 0 9025 3219 8409 48419;48420;48421;48422 58670;58671;58672;58673;58674 58670 5 IKLYSESLAR Unmodified 1178.6659 0.66592292 1133;884 P50395;P50395-2;P31150 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha no no 0 0 0 1 By matching By MS/MS 1.33 0.471 2 1 1 2 45.379 45.365 3 8.5627E-05 14249 20211116_3439_TMUAki_TMT10x_S_F1 88.187 52.306 682560 1155500 19717 1212500 787360 867040 670890 2839300 2748900 1863200 1587000 635670 1078400 76432 1227800 753220 948920 750930 2758100 2664400 1859900 1566900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 682560 1155500 19717 1212500 787360 867040 670890 2839300 2748900 1863200 1587000 635670 1078400 76432 1227800 753220 948920 750930 2758100 2664400 1859900 1566900 1 1 1 1 1 1 1 1 1 1 1 114650000 73341000 41307000 9026 1133;884 8410 48423;48424;48425 58675;58676 58675 2 IKNPTRVEEIICGLIK Unmodified 1882.071 0.071003459 2776 Q9H0P0;Q9H0P0-1;Q9H0P0-3;Q9H0P0-2 NT5C3A Cytosolic 5'-nucleotidase 3A yes no 0 0 0 2 By MS/MS 3 0 1 1 72.985 72.671 4 0.00087803 26370 20211116_3441_TMUAki_TMT10x_S_F3 71.354 52.279 5936000 9621700 108070 9862600 6072500 5993600 6584200 5234700 4132100 5268400 6797800 5527800 8978900 594760 9986600 5842000 6327400 6576000 5361600 4405600 5144000 6475100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5936000 9621700 108070 9862600 6072500 5993600 6584200 5234700 4132100 5268400 6797800 5527800 8978900 594760 9986600 5842000 6327400 6576000 5361600 4405600 5144000 6475100 2 2 2 2 2 2 2 2 2 2 2 307980000 0 307980000 9027 2776 8411 48426 58677;58678 58678 2 IKPHLMSQELPEDWDKQPVK Oxidation (M) 2433.2362 0.23623089 533 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 1 2 By MS/MS By MS/MS 7.5 0.5 3 3 4 2 49.201 49.502 5;6 1.3093E-12 13936 20211116_3436_TMUAki_TMT10x_P_F8 125.73 115.33 22556000 40077000 421510 41972000 41944000 49896000 31598000 25708000 25510000 25413000 30998000 21005000 37404000 2514500 42803000 39982000 49798000 32403000 27350000 26413000 24832000 29733000 8 8 7 8 8 8 8 8 8 8 8 15319000 27284000 235520 28950000 35394000 44706000 26295000 17586000 17407000 17336000 20887000 14265000 25465000 1750800 29651000 33722000 43962000 26873000 19241000 18221000 16941000 20042000 5 5 4 5 5 5 5 5 5 5 5 7237400 12794000 185990 13023000 6550600 5189600 5302500 8122700 8103200 8077600 10111000 6740200 11939000 763750 13152000 6260900 5835900 5530500 8109200 8192300 7890800 9691700 3 3 3 3 3 3 3 3 3 3 3 4667300000 3300300000 1367000000 9028 533 8412 48427;48428;48429;48430;48431;48432 58679;58680;58681;58682;58683;58684;58685;58686 58682 456 8 IKPPTPAVSNVR Unmodified 1277.7456 0.74557022 20 A6NHR9;A6NHR9-2;A6NHR9-3 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 0 1 By MS/MS 3 0 1 1 37.337 37.08 3 0.00025618 11854 20211116_3441_TMUAki_TMT10x_S_F3 85.837 60.7 1035400 1535800 41474 1658700 985680 879540 970830 1242400 1263200 1047000 1390700 964320 1433500 123790 1671800 947260 952230 994580 1239000 1276800 1030600 1337600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1035400 1535800 41474 1658700 985680 879540 970830 1242400 1263200 1047000 1390700 964320 1433500 123790 1671800 947260 952230 994580 1239000 1276800 1030600 1337600 1 1 1 1 1 1 1 1 1 1 1 45274000 0 45274000 9029 20 8413 48433 58687 58687 1 IKSEHPGLSIGDTAK Unmodified 1551.8257 0.82567103 817 P26583 HMGB2 High mobility group protein B2 yes yes 0 0 0 1 By MS/MS 6 0 1 1 24.064 24.097 4 0.01978 4140 20211116_3434_TMUAki_TMT10x_P_F6 51.265 33.348 142070 221270 5895.6 264800 369370 325110 177620 196840 241740 163610 189750 132320 206630 20456 267970 349700 324600 192180 205610 241280 161160 184650 1 1 1 1 1 1 1 1 1 1 1 142070 221270 5895.6 264800 369370 325110 177620 196840 241740 163610 189750 132320 206630 20456 267970 349700 324600 192180 205610 241280 161160 184650 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21238000 21238000 0 9030 817 8414 48434 58688 58688 1 IKSGEEDFESLASQFSDCSSAK Unmodified 2421.0642 0.064199339 1642 Q13526 PIN1 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.707 2 4 2 3 5 71.141 71.1 3;4 1.1553E-19 23266 20211116_3433_TMUAki_TMT10x_P_F5 153.21 138.75 32585000 58332000 429600 49149000 43554000 53270000 41116000 41960000 35473000 40942000 44462000 30342000 54396000 3076200 50850000 41715000 53759000 41658000 43203000 36653000 40028000 42612000 13 13 8 13 13 13 13 13 13 13 13 14760000 26151000 244960 22478000 16616000 31244000 19813000 18161000 16199000 18316000 19551000 13744000 24388000 1381900 23322000 16021000 30995000 19818000 19129000 16756000 17882000 18757000 5 5 3 5 5 5 5 5 5 5 5 17825000 32181000 184640 26671000 26939000 22025000 21303000 23800000 19274000 22627000 24910000 16598000 30008000 1694300 27528000 25694000 22764000 21840000 24073000 19897000 22147000 23856000 8 8 5 8 8 8 8 8 8 8 8 5231200000 1921600000 3309700000 9031 1642 8415 48435;48436;48437;48438;48439;48440;48441;48442 58689;58690;58691;58692;58693;58694;58695;58696;58697;58698;58699;58700;58701 58689 13 IKVAEDEAEAAAAAK Unmodified 1485.7675 0.76748745 551 P08195;P08195-3;P08195-2;P08195-4 SLC3A2 4F2 cell-surface antigen heavy chain yes no 0 0 0 1 By MS/MS By matching 4 0 2 1 1 52.418 52.541 3 0.0011981 15398 20211116_3431_TMUAki_TMT10x_P_F4 67.902 47.796 3336800 5256000 45606 6330900 8415800 10095000 5305500 5770500 6370400 4744000 5428800 3107300 4908400 390280 6438900 7994100 9954900 5577200 6054600 6400800 4675500 5266100 1 1 1 1 1 1 1 1 1 1 1 3336800 5256000 45606 6330900 8415800 10095000 5305500 5770500 6370400 4744000 5428800 3107300 4908400 390280 6438900 7994100 9954900 5577200 6054600 6400800 4675500 5266100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 403930000 226350000 177570000 9032 551 8416 48443;48444 58702 58702 1 IKVDEFVTHNLSFDEINK Unmodified 2147.0899 0.089884225 631 P11766 ADH5 Alcohol dehydrogenase class-3 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 67.641 67.77 4 2.8685E-23 22587 20211116_3435_TMUAki_TMT10x_P_F7 160.55 150.08 32222000 53052000 187690 50899000 35509000 44430000 34590000 30222000 30116000 31248000 37879000 30002000 49495000 2832700 51981000 34032000 45342000 34996000 31475000 31109000 30476000 36300000 6 6 3 6 6 6 6 6 6 6 6 16104000 26228000 38948 25134000 16376000 29491000 17331000 14705000 14707000 15440000 18246000 14995000 24470000 1334300 25783000 15725000 29443000 17448000 15719000 15202000 15049000 17491000 3 3 1 3 3 3 3 3 3 3 3 16117000 26824000 148740 25765000 19133000 14939000 17259000 15517000 15409000 15807000 19633000 15008000 25026000 1498400 26198000 18306000 15900000 17548000 15756000 15907000 15426000 18809000 3 3 2 3 3 3 3 3 3 3 3 6183300000 3105700000 3077700000 9033 631 8417 48445;48446;48447;48448;48449;48450 58703;58704;58705;58706;58707;58708 58703 6 IKVDFVIPK Unmodified 1057.6536 0.65356732 346 O75534;O75534-2;O75534-3;O75534-4 CSDE1 Cold shock domain-containing protein E1 yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 62.075 61.817 3 1.3703E-05 19135 20211116_3440_TMUAki_TMT10x_S_F2 108.48 58.357 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9034 346 8418 48451;48452 58709;58710 58710 2 IKWGDAGAEYVVESTGVFTTMEK Oxidation (M) 2533.2047 0.20465599 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 1 1 By MS/MS By MS/MS 6.44 1.27 2 4 7 5 7 12 13 82.709 82.681 3;4 8.9454E-21 25106 20211116_3436_TMUAki_TMT10x_P_F8 150.14 134.2 203030000 363400000 1487200 259050000 202190000 259580000 257880000 135200000 136030000 179620000 220530000 189040000 338700000 13655000 271650000 195250000 261620000 254890000 145070000 146720000 173590000 210120000 34 34 16 34 34 34 34 34 34 34 34 78315000 141990000 814600 98843000 72960000 144670000 95213000 55299000 52439000 70921000 86311000 72919000 132330000 5801900 104570000 70518000 142550000 94091000 61202000 56421000 68621000 82212000 16 16 6 16 16 16 16 16 16 16 16 124720000 221410000 672620 160210000 129230000 114910000 162660000 79905000 83592000 108700000 134220000 116120000 206370000 7853300 167080000 124740000 119070000 160800000 83871000 90297000 104970000 127910000 18 18 10 18 18 18 18 18 18 18 18 61329000000 28893000000 32436000000 9035 489 8419 48453;48454;48455;48456;48457;48458;48459;48460;48461;48462;48463;48464;48465;48466;48467;48468;48469;48470;48471;48472;48473;48474;48475;48476;48477 58711;58712;58713;58714;58715;58716;58717;58718;58719;58720;58721;58722;58723;58724;58725;58726;58727;58728;58729;58730;58731;58732;58733;58734;58735;58736;58737;58738;58739;58740;58741;58742;58743;58744 58724 387 34 IKWGDAGAEYVVESTGVFTTMEK Unmodified 2517.2097 0.20974136 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 1 By MS/MS By MS/MS 6.69 1.1 3 4 4 5 9 7 78.938 78.941 3;4 6.6481E-21 27538 20211116_3446_TMUAki_TMT10x_S_F7 153.83 140.2 104500000 175340000 423460 158540000 106870000 97680000 130550000 43523000 38733000 53993000 101280000 97298000 163550000 8263800 162010000 103070000 102050000 128340000 47298000 45642000 52301000 95768000 16 16 6 16 16 16 16 16 16 16 16 47167000 78731000 143240 70179000 46961000 58909000 60713000 18731000 18486000 25024000 45778000 43917000 73432000 3281500 72030000 45368000 59805000 59558000 21260000 21623000 24180000 43315000 8 8 2 8 8 8 8 8 8 8 8 57330000 96614000 280220 88361000 59908000 38771000 69838000 24792000 20247000 28969000 55506000 53381000 90120000 4982300 89984000 57705000 42242000 68786000 26037000 24019000 28121000 52453000 8 8 4 8 8 8 8 8 8 8 8 31425000000 14714000000 16710000000 9036 489 8419 48478;48479;48480;48481;48482;48483;48484;48485;48486;48487;48488;48489;48490;48491;48492;48493 58745;58746;58747;58748;58749;58750;58751;58752;58753;58754;58755;58756;58757;58758;58759;58760 58757 16 IKYPENFFLLR Unmodified 1438.7973 0.79727144 1333;1334;957 P62140;P36873;P36873-2;P62136;P62136-2;P62136-3 PPP1CB;PPP1CC;PPP1CA Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit no no 0 0 0 1 By MS/MS By MS/MS 3.8 0.748 2 2 1 3 2 69.357 69.211 3 4.8778E-08 22147 20211116_3431_TMUAki_TMT10x_P_F4 140.91 114.86 83540000 139450000 410150 142380000 97205000 124170000 90972000 80495000 79817000 76382000 99317000 77783000 130130000 5386100 144770000 93041000 126630000 92257000 83922000 82380000 74768000 95204000 5 5 3 5 5 5 5 5 5 5 5 48651000 83598000 126330 80484000 61893000 99275000 57844000 45361000 45620000 40979000 56432000 45300000 77994000 2717900 82607000 59252000 98764000 58507000 48710000 47329000 40203000 54103000 3 3 2 3 3 3 3 3 3 3 3 34888000 55853000 283830 61900000 35313000 24891000 33128000 35134000 34197000 35402000 42885000 32483000 52139000 2668200 62167000 33790000 27870000 33750000 35213000 35051000 34564000 41101000 2 2 1 2 2 2 2 2 2 2 2 7675700000 4325700000 3350000000 9037 1334;957;1333 8420 48494;48495;48496;48497;48498 58761;58762;58763;58764 58761 4 ILAAALTECHR Unmodified 1253.655 0.65504065 1040 P46060 RANGAP1 Ran GTPase-activating protein 1 yes yes 0 0 0 0 By MS/MS 7 0 1 1 46.437 46.928 3 6.1911E-05 14584 20211116_3446_TMUAki_TMT10x_S_F7 89.171 73.017 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9038 1040 8421 48499 58765 58765 1 ILAAALTECHRK Unmodified 1381.75 0.75000367 1040 P46060 RANGAP1 Ran GTPase-activating protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.707 2 4 2 4 4 42.043 41.927 3;4 3.6736E-12 10912 20211116_3440_TMUAki_TMT10x_S_F2 170.52 122.52 5874700 9227200 46570 9949600 9593200 8544000 6198500 6571100 6520200 6115700 7943800 5470200 8612700 581320 10078000 9115800 8746400 6474900 6767000 6669600 5991600 7619000 8 8 6 8 8 8 8 8 8 8 8 3194100 4823200 22758 5292200 6845000 6191300 3637700 3526800 3503300 3276800 4257600 2974200 4502400 335940 5379200 6484000 6191900 3853400 3712800 3596600 3210600 4083800 4 4 2 4 4 4 4 4 4 4 4 2680500 4403900 23812 4657400 2748100 2352700 2560800 3044400 3017000 2838900 3686200 2496000 4110300 245370 4698900 2631800 2554500 2621400 3054200 3073000 2781100 3535200 4 4 4 4 4 4 4 4 4 4 4 876120000 454760000 421350000 9039 1040 8422 48500;48501;48502;48503;48504;48505;48506;48507 58766;58767;58768;58769;58770;58771;58772;58773 58771 8 ILAAQGQLSAQGGAQPSVEAPAAPRPTATQLTR Unmodified 3255.7324 0.73238636 2835 Q9H936 SLC25A22 Mitochondrial glutamate carrier 1 yes yes 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 53.792 53.694 4 2.6607E-58 15853 20211116_3440_TMUAki_TMT10x_S_F2 215.98 189.99 955600 1640200 4935.5 1819700 1143500 1745000 1251700 1384500 1368300 1263700 1381200 889790 1531100 53562 1842600 1099500 1774200 1267600 1422300 1387300 1239200 1332000 2 2 1 2 2 2 2 2 2 2 2 548120 827810 4935.5 1021400 799450 1365100 860800 794890 817580 750110 782010 510390 773160 53562 1033400 768390 1356600 868600 835620 832380 734440 755480 1 1 1 1 1 1 1 1 1 1 1 407480 812380 0 798330 344060 379960 390870 589650 550680 513590 599220 379400 757980 0 809160 331080 417590 398970 586650 554960 504730 576540 1 1 0 1 1 1 1 1 1 1 1 1127400000 468900000 658460000 9040 2835 8423 48508;48509 58774;58775 58775 2 ILACDDLDEAAR Unmodified 1360.6293 0.62927941 3069 Q9P2R7;Q9P2R7-2 SUCLA2 Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 51.977 51.709 2 1.7982E-07 14694 20211116_3428_TMUAki_TMT10x_P_F1 110.84 80.671 5615800 8556500 0 9586800 8985300 8425500 5265100 5252900 5588300 5395800 6872900 5227600 7988000 349800 9689900 8511400 8583700 5545100 5505200 5716600 5263900 6590300 2 2 0 2 2 2 2 2 2 2 2 4283800 6532200 0 7173400 7779200 7470400 4278700 3691300 4042200 4010300 5085300 3987400 6097600 251400 7277200 7361100 7507100 4515800 3953400 4159600 3903500 4873300 1 1 0 1 1 1 1 1 1 1 1 1332000 2024300 0 2413300 1206200 955130 986320 1561600 1546100 1385500 1787700 1240200 1890400 98401 2412700 1150400 1076600 1029300 1551800 1557000 1360400 1717000 1 1 0 1 1 1 1 1 1 1 1 516240000 424020000 92217000 9041 3069 8424 48510;48511;48512;48513 58776;58777;58778;58779 58776 4 ILAEGGGAK Unmodified 814.45487 0.45486751 1097 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 By MS/MS 5 0.816 1 1 1 3 38.35 38.494 2 0.00019162 9031 20211116_3445_TMUAki_TMT10x_S_F6 99.139 40.221 1861600 3326500 17836 2888300 2018000 1654300 2326000 1362300 1555400 1313500 2156100 1733500 3102300 173150 2959000 1943800 1754800 2319400 1398400 1637400 1284900 2061300 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1861600 3326500 17836 2888300 2018000 1654300 2326000 1362300 1555400 1313500 2156100 1733500 3102300 173150 2959000 1943800 1754800 2319400 1398400 1637400 1284900 2061300 3 3 3 3 3 3 3 3 3 3 3 80134000 0 80134000 9042 1097 8425 48514;48515;48516 58780;58781;58782;58783 58783 4 ILAGLGFDPEMQNRPTQK Oxidation (M) 2030.0255 0.025509829 2241 Q8NE71;Q8NE71-2 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 1 1 By MS/MS By MS/MS 8 0 2 1 1 60.978 61.074 3 0.00015311 18080 20211116_3447_TMUAki_TMT10x_S_F8 75.463 65.266 8811100 15189000 212240 15211000 10358000 12591000 9068300 13619000 13269000 12605000 11545000 8205300 14173000 922410 15477000 9910600 13011000 9395900 13764000 13254000 12353000 11190000 3 3 2 3 3 3 3 3 3 3 3 3260300 5036800 0 4766300 4133700 6619400 3826200 4387600 4230300 3793000 3849800 3035400 4698800 254980 4909200 3954100 6578900 3909700 4555800 4272400 3728900 3725500 1 1 0 1 1 1 1 1 1 1 1 5550800 10153000 212240 10445000 6224500 5971400 5242100 9231000 9038700 8812200 7695200 5169900 9474600 667430 10568000 5956500 6432400 5486200 9208400 8981600 8623700 7464900 2 2 2 2 2 2 2 2 2 2 2 1382900000 663480000 719400000 9043 2241 8426 48517;48518 58784;58785;58786 58786 2638 3 ILAHNGLVGR Unmodified 1048.6142 0.61416212 3353 Q9Y6M1;Q9Y6M1-5;Q9Y6M1-6;Q9Y6M1-3;Q9Y6M1-4;Q9Y6M1-1 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes no 0 0 0 0 By MS/MS 1 0 1 1 36.082 36.048 3 1.4772E-06 10368 20211116_3439_TMUAki_TMT10x_S_F1 144.5 75.114 401750 661310 10797 636650 426370 365020 496530 394380 428900 399310 506850 374150 616980 43715 647160 411250 389270 497890 399650 442060 389790 486530 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 401750 661310 10797 636650 426370 365020 496530 394380 428900 399310 506850 374150 616980 43715 647160 411250 389270 497890 399650 442060 389790 486530 1 1 1 1 1 1 1 1 1 1 1 42977000 0 42977000 9044 3353 8427 48519 58787 58787 1 ILAHNNFVGR Unmodified 1139.62 0.61997578 3032;86 Q9NZI8;Q9NZI8-2;O00425 IGF2BP1;IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 1;Insulin-like growth factor 2 mRNA-binding protein 3 no no 0 0 0 0 By MS/MS By MS/MS 3.71 2.84 4 4 1 1 1 3 8 6 36.627 36.669 2;3 1.8502E-14 8821 20211116_3428_TMUAki_TMT10x_P_F1 226.46 197.76 13942000 22318000 168460 22882000 21041000 19500000 15692000 14107000 15830000 13943000 17639000 12982000 20827000 1260100 23253000 20044000 19953000 16201000 14610000 16162000 13624000 16959000 22 22 12 22 22 22 22 22 22 22 22 7476100 11748000 68756 11756000 14310000 13709000 8469700 7053100 7977800 7072200 9200500 6960800 10962000 642530 12022000 13574000 13696000 8881400 7507600 8180900 6906300 8837500 12 12 4 12 12 12 12 12 12 12 12 6466300 10570000 99699 11125000 6730000 5791400 7222700 7053400 7852000 6870900 8438200 6021400 9865300 617600 11231000 6470500 6257200 7320100 7102300 7981400 6718000 8121900 10 10 8 10 10 10 10 10 10 10 10 6726500000 4321300000 2405200000 9045 3032;86 8428 48520;48521;48522;48523;48524;48525;48526;48527;48528;48529;48530;48531;48532;48533 58788;58789;58790;58791;58792;58793;58794;58795;58796;58797;58798;58799;58800;58801;58802;58803;58804;58805;58806;58807;58808;58809;58810 58788 23 ILAIGLINEALDEGDAQK Unmodified 1882.0048 0.004757612 1059 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.86 1.25 1 2 2 1 1 2 5 80.827 80.811 3 3.2796E-31 26794 20211116_3440_TMUAki_TMT10x_S_F2 182.35 170.91 10727000 18133000 82554 17594000 13151000 14404000 14194000 10840000 10748000 11793000 14741000 9987700 16918000 932850 17940000 12636000 14790000 14236000 11230000 11227000 11478000 14096000 7 7 3 7 7 7 7 7 7 7 7 3610800 5817800 0 5709400 3436500 6031600 4065700 3437500 3373000 3547000 4612900 3361600 5428200 251660 5837000 3308000 6066400 4069600 3629200 3505800 3459700 4411500 2 2 0 2 2 2 2 2 2 2 2 7115900 12315000 82554 11885000 9714200 8372300 10128000 7402400 7374800 8245900 10128000 6626000 11490000 681200 12103000 9328400 8724000 10167000 7600400 7720800 8018700 9684600 5 5 3 5 5 5 5 5 5 5 5 3326500000 1260100000 2066300000 9046 1059 8429 48534;48535;48536;48537;48538;48539;48540 58811;58812;58813;58814;58815;58816;58817 58813 7 ILAPPGGR Unmodified 779.46537 0.46537261 2617 Q9BPU6 DPYSL5 Dihydropyrimidinase-related protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 5 3.29 2 1 2 3 2 37.366 37.596 2 0.00041496 8321 20211116_3447_TMUAki_TMT10x_S_F8 142.74 115.58 6539700 10106000 119060 10740000 8452100 9475900 7311900 5910700 6660200 6357000 7802400 6089900 9432100 667040 10893000 8081900 9651200 7456200 6202900 6844700 6190200 7491300 7 7 6 7 7 7 7 7 7 7 7 3946900 6028000 71755 6329500 6025100 7238100 4575900 3514200 4081900 3833800 4692800 3675400 5625900 410310 6449400 5744200 7234000 4702000 3770500 4195900 3731100 4508100 5 5 4 5 5 5 5 5 5 5 5 2592800 4077700 47305 4410200 2426900 2237800 2736100 2396500 2578300 2523200 3109600 2414500 3806200 256730 4443100 2337700 2417200 2754300 2432400 2648800 2459000 2983300 2 2 2 2 2 2 2 2 2 2 2 467750000 282070000 185680000 9047 2617 8430 48541;48542;48543;48544;48545 58818;58819;58820;58821;58822;58823 58823 6 ILAQVVGDVDTSLPR Unmodified 1581.8726 0.87262123 1757 Q15029;Q15029-2;Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 78.303 78.293 2 1.0566E-19 25035 20211116_3434_TMUAki_TMT10x_P_F6 145.81 118.71 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9048 1757 8431 48546;48547;48548 58824;58825;58826 58824 3 ILATGANVILTTGGIDDMCLK Oxidation (M) 2191.1228 0.12284061 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 1 0 By MS/MS 7.5 0.5 1 1 2 78.44 78.467 3 0.0036782 27209 20211116_3435_TMUAki_TMT10x_P_F7 54.271 42.105 13711000 21679000 23367 22029000 12943000 22961000 15365000 11654000 10147000 14234000 16376000 12766000 20230000 1106100 22462000 12470000 23079000 15297000 12497000 10772000 13795000 15604000 2 2 1 2 2 2 2 2 2 2 2 13711000 21679000 23367 22029000 12943000 22961000 15365000 11654000 10147000 14234000 16376000 12766000 20230000 1106100 22462000 12470000 23079000 15297000 12497000 10772000 13795000 15604000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3617800000 3617800000 0 9049 712 8432 48549;48550 58827;58828 58827 807 2 ILATGANVILTTGGIDDMCLK Unmodified 2175.1279 0.12792599 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 By MS/MS By matching 8 0 2 1 1 79.632 79.627 3 2.2258E-07 26274 20211116_3436_TMUAki_TMT10x_P_F8 88.396 76.231 2562200 4148800 98785 4240000 2293100 4114300 3120500 1770400 1996600 2553600 3197000 2386400 3871600 300720 4317200 2225500 4146500 3087200 1941700 2123000 2461700 3046900 1 1 1 1 1 1 1 1 1 1 1 2562200 4148800 98785 4240000 2293100 4114300 3120500 1770400 1996600 2553600 3197000 2386400 3871600 300720 4317200 2225500 4146500 3087200 1941700 2123000 2461700 3046900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1719300000 1204500000 514750000 9050 712 8432 48551;48552 58829 58829 1 ILATPPQEDAPSVDIANIR Unmodified 2019.0637 0.063669474 853 P29401;P29401-2 TKT Transketolase yes no 0 0 0 0 By MS/MS By MS/MS 4.36 0.881 2 4 4 1 5 6 68.451 68.381 2;3 2.2873E-79 21057 20211116_3444_TMUAki_TMT10x_S_F5 297.16 251 33752000 54235000 685930 53967000 36066000 45856000 36883000 31491000 28289000 31452000 39387000 31430000 50606000 3096700 54952000 34632000 46893000 37104000 32742000 29549000 30719000 37652000 15 15 13 15 15 15 15 15 15 15 15 19496000 29528000 488860 30278000 19905000 32411000 21943000 18237000 16544000 17945000 22173000 18157000 27555000 1885200 30867000 19167000 32568000 21984000 19248000 17267000 17538000 21215000 9 9 8 9 9 9 9 9 9 9 9 14255000 24707000 197080 23689000 16161000 13445000 14940000 13255000 11745000 13507000 17215000 13273000 23051000 1211500 24085000 15466000 14325000 15120000 13494000 12282000 13182000 16437000 6 6 5 6 6 6 6 6 6 6 6 9261100000 4786100000 4475100000 9051 853 8433 48553;48554;48555;48556;48557;48558;48559;48560;48561;48562;48563 58830;58831;58832;58833;58834;58835;58836;58837;58838;58839;58840;58841;58842;58843;58844 58844 15 ILCEAPVESVVQVSGTVISRPAGQENPK Unmodified 2963.5386 0.5386205 2009 Q6PI48 DARS2 Aspartate--tRNA ligase, mitochondrial yes yes 0 0 0 1 By MS/MS 7 0 1 1 71.383 71.625 4 1.8506E-06 24716 20211116_3446_TMUAki_TMT10x_S_F7 80.02 67.091 5394700 9256600 69410 8409600 6178200 5383600 6049000 5388100 5038600 5586500 6197000 5023200 8634200 490390 8593800 5922800 5671200 6111300 5483900 5211200 5447900 5942100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5394700 9256600 69410 8409600 6178200 5383600 6049000 5388100 5038600 5586500 6197000 5023200 8634200 490390 8593800 5922800 5671200 6111300 5483900 5211200 5447900 5942100 2 2 1 2 2 2 2 2 2 2 2 594930000 0 594930000 9052 2009 8434 48564 58845;58846 58845 2 ILCFYGPPGVGK Unmodified 1306.6744 0.67437911 955 P36776;P36776-3;P36776-2 LONP1 Lon protease homolog, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 72.548 72.186 3 5.0891E-06 26164 20211116_3441_TMUAki_TMT10x_S_F3 105.86 86.805 3399600 5501700 54033 5644100 3996500 3531300 3633500 3079600 2811500 3149600 4110700 3165800 5134200 340570 5716300 3826200 3717600 3679100 3156000 2942300 3073200 3925300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3399600 5501700 54033 5644100 3996500 3531300 3633500 3079600 2811500 3149600 4110700 3165800 5134200 340570 5716300 3826200 3717600 3679100 3156000 2942300 3073200 3925300 2 2 2 2 2 2 2 2 2 2 2 170860000 0 170860000 9053 955 8435 48565;48566 58847;58848;58849 58848 3 ILDAVVAQEPLHR Unmodified 1459.8147 0.81471242 1757 Q15029;Q15029-2;Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 By MS/MS By MS/MS 4.71 1.03 1 2 2 2 4 3 56.852 56.951 3 1.213E-14 17193 20211116_3431_TMUAki_TMT10x_P_F4 161.48 102.05 16420000 26034000 210010 27070000 21394000 22776000 17096000 20243000 19650000 17774000 22011000 15289000 24296000 1541400 27479000 20413000 23410000 17645000 20635000 19963000 17460000 21160000 7 7 4 7 7 7 7 7 7 7 7 6696100 10309000 189370 10892000 11389000 14068000 7728500 8265900 8382500 7376700 9048900 6235800 9621900 758590 11118000 10837000 14005000 8051000 8670400 8522800 7241100 8708500 3 3 2 3 3 3 3 3 3 3 3 9723500 15724000 20635 16178000 10005000 8707700 9367800 11977000 11268000 10397000 12962000 9053300 14674000 782830 16361000 9575200 9405100 9594300 11965000 11440000 10219000 12452000 4 4 2 4 4 4 4 4 4 4 4 4686800000 2369500000 2317300000 9054 1757 8436 48567;48568;48569;48570;48571;48572;48573 58850;58851;58852;58853;58854;58855;58856;58857;58858 58851 9 ILDDDTIITTLENLKR Unmodified 1872.0204 0.020407676 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 1 By MS/MS By MS/MS 5.92 1.66 1 2 2 2 2 3 7 5 73.418 73.41 3 7.2732E-36 26665 20211116_3431_TMUAki_TMT10x_P_F4 213.51 177.06 63584000 104750000 1502500 98224000 70079000 103310000 79734000 63448000 60365000 66402000 78041000 59214000 97715000 6726900 100740000 67527000 104040000 79773000 66610000 62886000 64730000 74736000 13 13 11 13 13 13 13 13 13 13 13 42563000 67753000 850820 64439000 40954000 77506000 50806000 42927000 38647000 43481000 50597000 39637000 63208000 4298300 66168000 39568000 77375000 50643000 45407000 40273000 42443000 48439000 8 8 7 8 8 8 8 8 8 8 8 21020000 36994000 651720 33785000 29125000 25809000 28928000 20521000 21718000 22921000 27445000 19576000 34507000 2428600 34573000 27959000 26665000 29130000 21203000 22613000 22287000 26298000 5 5 4 5 5 5 5 5 5 5 5 12432000000 6223800000 6208300000 9055 1695 8437 48574;48575;48576;48577;48578;48579;48580;48581;48582;48583;48584;48585 58859;58860;58861;58862;58863;58864;58865;58866;58867;58868;58869;58870;58871 58859 13 ILDDICVAK Unmodified 1045.5478 0.54778161 1760 Q15046;Q15046-2 KARS Lysine--tRNA ligase yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 63.989 64.094 2 3.3497E-05 20643 20211116_3442_TMUAki_TMT10x_S_F4 122.52 63.939 10663000 17086000 297900 17194000 18690000 23678000 13398000 13783000 13740000 12928000 14200000 9930600 15944000 1274100 17630000 17806000 23499000 13878000 14487000 13980000 12662000 13684000 2 2 2 2 2 2 2 2 2 2 2 10663000 17086000 297900 17194000 18690000 23678000 13398000 13783000 13740000 12928000 14200000 9930600 15944000 1274100 17630000 17806000 23499000 13878000 14487000 13980000 12662000 13684000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 309320000 309320000 0 9056 1760 8438 48586;48587 58872;58873;58874 58874 3 ILDEIEEHNIK Unmodified 1351.6983 0.69834526 1752 Q15019;Q15019-2;Q15019-3 SEPT2 Septin-2 yes no 0 0 0 0 By MS/MS By MS/MS 2 1 1 1 1 1 58.555 58.145 3 0.00066898 17331 20211116_3428_TMUAki_TMT10x_P_F1 80.871 51.784 2807300 4457900 15413 4720600 2319800 2308600 2032900 3371900 3770400 3777600 3985200 2613900 4160700 240280 4761200 2218000 2524600 2130800 3386800 3767300 3672600 3837700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2807300 4457900 15413 4720600 2319800 2308600 2032900 3371900 3770400 3777600 3985200 2613900 4160700 240280 4761200 2218000 2524600 2130800 3386800 3767300 3672600 3837700 1 1 1 1 1 1 1 1 1 1 1 218610000 0 218610000 9057 1752 8439 48588;48589 58875;58876 58875 2 ILDIDNVDLAMGK Oxidation (M) 1431.7279 0.72793082 225 O43615 TIMM44 Mitochondrial import inner membrane translocase subunit TIM44 yes yes 0 0 1 0 By MS/MS 5 0 1 1 72.335 72.346 3 0.0062427 22723 20211116_3444_TMUAki_TMT10x_S_F5 59.871 44.898 3337500 6233700 71389 5498000 4893200 3655300 4574100 3494800 3341700 4000400 4371000 3108000 5813900 365020 5633300 4688100 3833900 4618200 3576500 3490000 3886200 4184700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3337500 6233700 71389 5498000 4893200 3655300 4574100 3494800 3341700 4000400 4371000 3108000 5813900 365020 5633300 4688100 3833900 4618200 3576500 3490000 3886200 4184700 1 1 1 1 1 1 1 1 1 1 1 267220000 0 267220000 9058 225 8440 48590 58877 58877 176 1 ILDILGETCK Unmodified 1160.6111 0.61111015 1804;1683 Q15424;Q15424-3;Q15424-2;Q15424-4;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 no no 0 0 0 0 By MS/MS By MS/MS 5.83 1.07 1 1 2 2 4 2 75.999 76.054 2 4.2614E-07 24515 20211116_3445_TMUAki_TMT10x_S_F6 112.3 57.688 22809000 34914000 366060 39681000 29722000 39799000 25505000 24329000 25007000 24574000 28709000 21241000 32596000 2329000 40146000 28415000 40190000 26076000 25524000 25593000 23990000 27580000 5 5 5 5 5 5 5 5 5 5 5 18610000 28405000 357200 32775000 25648000 36573000 22053000 20178000 20721000 20288000 23674000 17330000 26521000 1974400 33184000 24524000 36656000 22516000 21346000 21243000 19810000 22746000 4 4 4 4 4 4 4 4 4 4 4 4199400 6508500 8857.4 6906500 4073100 3225700 3452100 4151400 4286100 4285900 5035200 3910100 6074600 354650 6962600 3890400 3534000 3559900 4178200 4350500 4180300 4834100 1 1 1 1 1 1 1 1 1 1 1 1538000000 1382400000 155580000 9059 1804;1683 8441 48591;48592;48593;48594;48595;48596 58878;58879;58880;58881;58882;58883 58882 6 ILDIVPPTFSALCPANPTCIYK Unmodified 2489.2698 0.2698392 1554 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.92 0.954 1 3 4 4 7 5 80.716 80.696 3;4 1.7585E-20 28508 20211116_3430_TMUAki_TMT10x_P_F3 158.58 142.63 37529000 63830000 167600 58446000 44936000 52260000 47024000 34160000 29175000 36144000 45825000 34943000 59540000 2157600 59912000 43139000 53214000 47036000 35704000 31053000 35218000 43691000 14 14 7 14 14 14 14 14 14 14 14 16833000 28875000 94550 26376000 16374000 29232000 18905000 15597000 13578000 16889000 19796000 15674000 26934000 1166200 27127000 15768000 29297000 18879000 16584000 14267000 16441000 18904000 6 6 3 6 6 6 6 6 6 6 6 20696000 34955000 73050 32070000 28562000 23029000 28119000 18563000 15597000 19255000 26029000 19269000 32606000 991360 32785000 27371000 23917000 28158000 19120000 16786000 18777000 24787000 8 8 4 8 8 8 8 8 8 8 8 15898000000 8968500000 6930000000 9060 1554 8442 48597;48598;48599;48600;48601;48602;48603;48604;48605;48606;48607;48608 58884;58885;58886;58887;58888;58889;58890;58891;58892;58893;58894;58895;58896 58886 13 ILDLGITGPEGHVLSRPEEVEAEAVNR Unmodified 2899.5039 0.50394955 1852 Q16555;Q16555-2 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 3 1.63 4 4 4 2 2 2 9 9 65.226 65.061 3;4 4.7419E-142 22214 20211116_3439_TMUAki_TMT10x_S_F1 336.05 310.64 139010000 226930000 1165100 226160000 156560000 229880000 151740000 132030000 120130000 136700000 158070000 129440000 211750000 8623900 230830000 150020000 231760000 153190000 139320000 124950000 133320000 151310000 37 37 15 37 37 37 37 37 37 37 37 94581000 150500000 895690 150500000 101350000 183090000 105270000 85333000 77907000 89217000 102830000 88068000 140430000 6071000 154020000 97309000 182310000 105720000 91811000 81338000 86974000 98424000 22 22 9 22 22 22 22 22 22 22 22 44432000 76431000 269380 75662000 55203000 46792000 46472000 46699000 42228000 47485000 55240000 41371000 71316000 2552900 76811000 52710000 49447000 47464000 47509000 43607000 46344000 52885000 15 15 6 15 15 15 15 15 15 15 15 72385000000 36658000000 35728000000 9061 1852 8443 48609;48610;48611;48612;48613;48614;48615;48616;48617;48618;48619;48620;48621;48622;48623;48624;48625;48626 58897;58898;58899;58900;58901;58902;58903;58904;58905;58906;58907;58908;58909;58910;58911;58912;58913;58914;58915;58916;58917;58918;58919;58920;58921;58922;58923;58924;58925;58926;58927;58928;58929;58930;58931;58932;58933 58922 37 ILDNTSEPQPGEAR Unmodified 1525.7372 0.73724996 1135 P50416;P50416-2 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform yes no 0 0 0 0 By MS/MS 3 0 1 1 36.22 36.227 3 0.001082 10452 20211116_3430_TMUAki_TMT10x_P_F3 67.102 56.748 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9062 1135 8444 48627 58934 58934 1 ILDPEGLALGAVIASSK Unmodified 1652.9349 0.93488713 2164 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 2 3 80.313 80.323 3 1.5698E-11 28392 20211116_3446_TMUAki_TMT10x_S_F7 137.17 121.28 18573000 31656000 777070 30711000 24058000 32734000 26563000 23466000 19836000 22053000 25576000 17299000 29535000 2316900 31428000 23177000 33014000 26605000 24284000 20677000 21596000 24495000 5 5 4 5 5 5 5 5 5 5 5 8795800 14597000 551630 15722000 10009000 19411000 11978000 12462000 9249300 10649000 12108000 8193900 13625000 1260300 16014000 9679900 19390000 11963000 12967000 9630400 10475000 11592000 2 2 2 2 2 2 2 2 2 2 2 9777000 17059000 225440 14990000 14049000 13323000 14585000 11004000 10586000 11404000 13468000 9104900 15910000 1056600 15413000 13497000 13624000 14642000 11317000 11047000 11122000 12903000 3 3 2 3 3 3 3 3 3 3 3 3009100000 1185800000 1823300000 9063 2164 8445 48628;48629;48630;48631;48632 58935;58936;58937;58938;58939 58938 5 ILDPNTGEPAPVLSSPPPADVSTFLAFPSPEK Unmodified 3289.6758 0.67582548 1040 P46060 RANGAP1 Ran GTPase-activating protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.57 0.904 1 2 3 1 3 4 80.642 80.653 3;4 5.6081E-21 28539 20211116_3446_TMUAki_TMT10x_S_F7 133.94 121.26 25750000 42909000 86337 39958000 27323000 37769000 32413000 21094000 21731000 23441000 30514000 23973000 40028000 1806400 40939000 26311000 38237000 32281000 22359000 22887000 22797000 29164000 11 11 3 11 11 11 11 11 11 11 11 14303000 23022000 76044 21830000 13276000 24930000 15974000 12160000 12170000 13398000 17603000 13317000 21478000 1029400 22401000 12795000 24919000 15944000 13045000 12740000 13034000 16813000 6 6 2 6 6 6 6 6 6 6 6 11447000 19887000 10294 18128000 14047000 12839000 16438000 8934200 9561300 10042000 12911000 10657000 18550000 777000 18538000 13515000 13318000 16336000 9313900 10147000 9762300 12351000 5 5 1 5 5 5 5 5 5 5 5 12015000000 5514300000 6500400000 9064 1040 8446 48633;48634;48635;48636;48637;48638;48639 58940;58941;58942;58943;58944;58945;58946;58947;58948 58946 9 ILDQGEDFPASEMTR Oxidation (M) 1723.7723 0.77231483 858 P30040 ERP29 Endoplasmic reticulum resident protein 29 yes yes 0 0 1 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 52.9 52.527 2 3.5762E-06 18144 20211116_3441_TMUAki_TMT10x_S_F3 110.08 85.201 824540 1380700 0 1597700 691230 626700 538960 1357100 1475200 1118800 1355600 767670 1289100 59723 1600100 658520 714750 583640 1335800 1455500 1102500 1311400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 824540 1380700 0 1597700 691230 626700 538960 1357100 1475200 1118800 1355600 767670 1289100 59723 1600100 658520 714750 583640 1335800 1455500 1102500 1311400 1 1 0 1 1 1 1 1 1 1 1 136480000 0 136480000 9065 858 8447 48640;48641;48642;48643 58949;58950;58951;58952 58952 1025 4 ILDQGEDFPASEMTR Unmodified 1707.7774 0.77740021 858 P30040 ERP29 Endoplasmic reticulum resident protein 29 yes yes 0 0 0 0 By MS/MS 2 0 1 1 62.16 61.88 2 8.1943E-15 20448 20211116_3429_TMUAki_TMT10x_P_F2 143.25 116.58 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9066 858 8447 48644 58953 58953 1 ILDSAEFIK Unmodified 1034.5648 0.56481189 1428 P78347;P78347-2;P78347-4;P78347-3 GTF2I General transcription factor II-I yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 67.443 67.451 2 0.0025935 21542 20211116_3431_TMUAki_TMT10x_P_F4 83.168 41.059 79037000 127210000 518270 132020000 89720000 112640000 84078000 82811000 86016000 86875000 99616000 73593000 118720000 6954600 134050000 85902000 115280000 85639000 85824000 87904000 84679000 95675000 6 6 3 6 6 6 6 6 6 6 6 41367000 66262000 83662 69222000 50351000 76832000 44614000 43208000 44052000 45523000 51535000 38516000 61840000 3498800 70522000 48131000 77046000 45536000 45697000 45105000 44365000 49482000 3 3 1 3 3 3 3 3 3 3 3 37670000 60946000 434610 62794000 39369000 35810000 39464000 39603000 41964000 41352000 48081000 35077000 56876000 3455900 63526000 37771000 38230000 40103000 40126000 42799000 40314000 46192000 3 3 2 3 3 3 3 3 3 3 3 2196100000 1417200000 778890000 9067 1428 8448 48645;48646;48647;48648 58954;58955;58956;58957;58958;58959 58954 6 ILDSFAAAPVPTTTLVLK Unmodified 1856.0659 0.065901306 719 P18583;P18583-3;P18583-5;P18583-6;P18583-10;P18583-4;P18583-7;P18583-9;P18583-2;P18583-8 SON Protein SON yes no 0 0 0 0 By MS/MS By MS/MS 2 0.577 1 4 1 3 3 68.959 68.922 2;3 6.7468E-17 26312 20211116_3440_TMUAki_TMT10x_S_F2 143.42 120.51 7814100 12407000 45894 10944000 7672000 10513000 9162200 5164200 5862200 6397600 8193500 7275800 11571000 655710 11262000 7394300 10616000 9113500 5557400 6191000 6197400 7831800 3 3 1 3 3 3 3 3 3 3 3 5613000 8684100 0 7548000 4965100 7948300 6361000 3420400 4104000 4398800 5362800 5226000 8098900 423630 7786400 4793700 7970700 6309400 3735500 4318600 4255800 5134300 1 1 0 1 1 1 1 1 1 1 1 2201100 3722400 45894 3396500 2706900 2564300 2801200 1743700 1758200 1998800 2830800 2049800 3472200 232080 3475600 2600600 2645200 2804100 1822000 1872400 1941600 2697500 2 2 1 2 2 2 2 2 2 2 2 4879100000 2823600000 2055500000 9068 719 8449 48649;48650;48651;48652;48653;48654 58960;58961;58962 58961 3 ILDSVGIEADDDRLNK Unmodified 1771.8952 0.89520716 507 P05387 RPLP2 60S acidic ribosomal protein P2 yes yes 0 0 0 1 By MS/MS By MS/MS 3.8 1.33 1 2 2 5 4 1 8 7 61.678 61.642 3;4 8.1747E-54 19978 20211116_3430_TMUAki_TMT10x_P_F3 276.3 245.77 149410000 234130000 1619600 290360000 162350000 189100000 141610000 128740000 143510000 141850000 177270000 139120000 218680000 13400000 290730000 155210000 197530000 144790000 134040000 147080000 138000000 169960000 19 19 16 19 18 19 19 18 18 19 19 74956000 113570000 1163400 136200000 122200000 138040000 88746000 65587000 73345000 72775000 85614000 69800000 106060000 7960300 137380000 116400000 138890000 91291000 70557000 75725000 70780000 82209000 10 10 10 10 10 10 10 10 10 10 10 74451000 120560000 456190 154160000 40159000 51056000 52869000 63155000 70168000 69074000 91659000 69319000 112620000 5439600 153350000 38817000 58644000 53497000 63483000 71359000 67217000 87754000 9 9 6 9 8 9 9 8 8 9 9 35911000000 20755000000 15156000000 9069 507 8450 48655;48656;48657;48658;48659;48660;48661;48662;48663;48664;48665;48666;48667;48668;48669 58963;58964;58965;58966;58967;58968;58969;58970;58971;58972;58973;58974;58975;58976;58977;58978;58979;58980;58981 58966 19 ILDVASLEVLNEVNRR Unmodified 1839.0214 0.021410729 2350 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 1 By MS/MS By MS/MS 6.25 0.829 1 1 2 3 1 76.803 76.849 3 3.3782E-43 26464 20211116_3435_TMUAki_TMT10x_P_F7 234.21 201.48 14455000 23004000 8395.4 21154000 17372000 24248000 16622000 15746000 15117000 16211000 17593000 13459000 21458000 1170300 21758000 16634000 24320000 16853000 16452000 15532000 15814000 16895000 3 3 1 3 3 3 3 3 3 3 3 9362900 14274000 8395.4 13092000 9307700 18450000 10698000 10696000 10099000 10573000 11333000 8717600 13315000 745390 13519000 8957700 18291000 10761000 11263000 10344000 10332000 10894000 2 2 1 2 2 2 2 2 2 2 2 5092400 8729700 0 8062400 8064100 5797100 5923900 5049300 5017200 5638200 6260100 4741300 8143200 424930 8238200 7675900 6028600 6092700 5189100 5187900 5482300 6000400 1 1 0 1 1 1 1 1 1 1 1 2359400000 1380000000 979440000 9070 2350 8451 48670;48671;48672;48673 58982;58983;58984 58983 3 ILDWHVANTDKK Unmodified 1438.7569 0.75686319 966 P37837 TALDO1 Transaldolase yes yes 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 49.176 49.382 4 0.0001604 15021 20211116_3435_TMUAki_TMT10x_P_F7 89.189 69.865 5083500 7485100 29739 9856400 13299000 8613200 6731700 4365000 4084100 4181400 6946200 4733300 6993200 535200 9869000 12587000 8755800 7089700 4646900 4372300 4091300 6612100 3 3 1 3 3 3 3 3 3 3 3 3606200 5226600 29739 7028300 11996000 7523900 5472900 2908100 2791500 2769100 4759000 3357800 4883700 422710 7050200 11339000 7530500 5809500 3185600 3027000 2710200 4529900 2 2 1 2 2 2 2 2 2 2 2 1477300 2258500 0 2828100 1302700 1089300 1258900 1456900 1292600 1412200 2187200 1375400 2109500 112490 2818900 1247500 1225300 1280300 1461400 1345300 1381100 2082200 1 1 0 1 1 1 1 1 1 1 1 697260000 554310000 142950000 9071 966 8452 48674;48675;48676 58985;58986;58987 58985 3 ILEAHQNVAQMSLIEAK Oxidation (M) 1909.9931 0.99314707 2406 Q96AC1;Q96AC1-2;Q96AC1-3 FERMT2 Fermitin family homolog 2 yes no 0 0 1 0 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 50.758 51.166 3 1.6171E-05 14254 20211116_3445_TMUAki_TMT10x_S_F6 88.133 74.454 2609900 4377100 37952 5104100 4123400 4953200 2911300 4384900 4594600 3777100 4179800 2430400 4087100 272950 5153400 3925600 5042500 3068500 4468700 4585800 3713900 4045000 2 2 2 2 2 2 2 2 2 2 2 1349000 2121400 5505.1 2441100 2922600 3703000 1902800 2211500 2332000 1795700 2000800 1256100 1980700 139010 2486600 2777000 3661000 1996700 2311300 2341900 1770900 1940400 1 1 1 1 1 1 1 1 1 1 1 1260900 2255700 32447 2662900 1200800 1250200 1008500 2173400 2262600 1981400 2179000 1174300 2106300 133940 2666700 1148500 1381500 1071800 2157400 2244000 1943100 2104600 1 1 1 1 1 1 1 1 1 1 1 400670000 164010000 236660000 9072 2406 8453 48677;48678 58988;58989 58989 2729 2 ILEFFGLK Unmodified 965.5586 0.5586043 533 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 By MS/MS By MS/MS 4.25 2.28 2 2 2 2 5 3 80.598 80.576 2 0.0013201 26724 20211116_3440_TMUAki_TMT10x_S_F2 124.08 66.798 124910000 208520000 55666 214020000 114600000 162400000 154060000 84543000 76677000 94187000 145500000 116300000 194600000 6962100 217180000 110830000 166880000 151810000 90176000 83834000 91591000 138220000 6 6 1 6 6 6 6 6 6 6 6 57381000 91889000 55666 97337000 56760000 90848000 67188000 37180000 33587000 41966000 64127000 53424000 85763000 4363900 98818000 54661000 91745000 66566000 40654000 36723000 40789000 60915000 3 3 1 3 3 3 3 3 3 3 3 67527000 116640000 0 116690000 57838000 71552000 86867000 47364000 43090000 52221000 81369000 62872000 108830000 2598200 118360000 56169000 75133000 85240000 49522000 47110000 50802000 77309000 3 3 0 3 3 3 3 3 3 3 3 8545000000 4315200000 4229800000 9073 533 8454 48679;48680;48681;48682;48683;48684;48685;48686 58990;58991;58992;58993;58994;58995;58996;58997 58995 8 ILEFFGLKKEECPAVR Unmodified 1935.0288 0.028804293 533 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 2 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 70.428 70.151 4 1.3293E-28 23721 20211116_3429_TMUAki_TMT10x_P_F2 180.92 153.42 45063000 73910000 139570 62963000 61883000 62876000 47711000 52043000 40746000 46052000 53016000 41957000 68925000 3848700 65004000 58972000 63816000 48920000 53281000 42192000 45223000 50762000 6 6 4 6 6 6 6 6 6 6 6 22645000 34882000 68053 29759000 24476000 39392000 25244000 23900000 19728000 21629000 23733000 21084000 32530000 1713600 30865000 23476000 39187000 25395000 25014000 20454000 21218000 22770000 3 3 1 3 3 3 3 3 3 3 3 22418000 39027000 71519 33204000 37407000 23484000 22467000 28143000 21018000 24422000 29283000 20874000 36395000 2135200 34139000 35496000 24628000 23525000 28267000 21739000 24005000 27992000 3 3 3 3 3 3 3 3 3 3 3 4632600000 2426500000 2206100000 9074 533 8455 48687;48688;48689;48690 58998;58999;59000;59001;59002;59003 58998 6 ILEGGPILPK Unmodified 1035.6328 0.63283187 3175 Q9ULW0;Q9ULW0-2 TPX2 Targeting protein for Xklp2 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 63.74 64.298 2 0.0015971 21157 20211116_3435_TMUAki_TMT10x_P_F7 87.308 45.859 10511000 18379000 51531 18682000 13254000 15832000 8406000 13305000 13520000 13124000 14192000 9787000 17150000 926590 18995000 12588000 16248000 8938400 13650000 13554000 12825000 13669000 2 2 1 2 2 2 2 2 2 2 2 3340500 5612000 51531 5394900 4451100 8805200 1406500 3915100 3501600 3873800 4190300 3110800 5235800 340530 5570000 4194500 8649900 1650700 4226200 3495100 3785000 4020900 1 1 1 1 1 1 1 1 1 1 1 7170600 12767000 0 13287000 8803300 7026800 6999600 9390100 10018000 9250200 10001000 6676300 11915000 586050 13425000 8393600 7597600 7287700 9423800 10059000 9040000 9648300 1 1 0 1 1 1 1 1 1 1 1 980010000 411290000 568720000 9075 3175 8456 48691;48692 59004;59005 59004 2 ILEGPQQSLSGSPLQPIPASPPPQIPPGLRPR Unmodified 3323.8354 0.83539487 191 O15446;O15446-2 CD3EAP DNA-directed RNA polymerase I subunit RPA34 yes no 0 0 0 1 By matching By MS/MS 4 0 2 1 1 74.112 74.075 4 0.010891 24637 20211116_3442_TMUAki_TMT10x_S_F4 42.909 35.463 2384500 4068700 0 3880200 3687500 3006200 3044500 2323100 2653600 2689900 3049300 2220100 3795800 206670 3958700 3519000 3101100 3109700 2407400 2730700 2612000 2929300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2384500 4068700 0 3880200 3687500 3006200 3044500 2323100 2653600 2689900 3049300 2220100 3795800 206670 3958700 3519000 3101100 3109700 2407400 2730700 2612000 2929300 1 1 0 1 1 1 1 1 1 1 1 1061400000 221250000 840160000 9076 191 8457 48693;48694 59006 59006 1 ILELDQFK Unmodified 1004.5542 0.5542472 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 By MS/MS By MS/MS 5.14 1.25 2 2 4 4 2 7 7 70.869 70.858 2;3 0.00041592 23120 20211116_3433_TMUAki_TMT10x_P_F5 143.01 37.442 105850000 177720000 2048500 172650000 154000000 208440000 135280000 166240000 159500000 156370000 155840000 98567000 165820000 10873000 177020000 147290000 209190000 138950000 170850000 161070000 153120000 150450000 15 15 10 15 15 15 15 15 15 15 15 64477000 107640000 872940 102440000 108690000 164850000 96808000 100050000 99102000 94469000 92177000 60038000 100420000 6429400 105810000 103950000 162630000 98889000 104830000 100470000 92493000 89134000 9 9 7 9 9 9 9 9 9 9 9 41371000 70086000 1175600 70205000 45307000 43594000 38472000 66183000 60394000 61897000 63666000 38529000 65398000 4444000 71215000 43333000 46559000 40060000 66022000 60598000 60628000 61315000 6 6 3 6 6 6 6 6 6 6 6 10017000000 5235700000 4781600000 9077 647 8458 48695;48696;48697;48698;48699;48700;48701;48702;48703;48704;48705;48706;48707;48708 59007;59008;59009;59010;59011;59012;59013;59014;59015;59016;59017;59018;59019;59020;59021 59011 15 ILELLRPDPNTGK Unmodified 1464.83 0.83002813 1798 Q15393;Q15393-2 SF3B3 Splicing factor 3B subunit 3 yes no 0 0 0 1 By MS/MS 8 0 1 1 64.397 64.568 3 0.071553 20115 20211116_3436_TMUAki_TMT10x_P_F8 38.376 14.819 4745300 7527400 67036 7104000 7412700 10683000 5948200 6803200 6294200 5751800 6589800 4418800 7022300 493250 7330700 7074900 10576000 6120800 7081400 6398600 5660800 6347800 1 1 1 1 1 1 1 1 1 1 1 4745300 7527400 67036 7104000 7412700 10683000 5948200 6803200 6294200 5751800 6589800 4418800 7022300 493250 7330700 7074900 10576000 6120800 7081400 6398600 5660800 6347800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 442400000 442400000 0 9078 1798 8459 48709 59022 59022 1 ILEMGITGPEGHALSRPEELEAEAVFR Oxidation (M) 2966.4808 0.48077127 1691 Q14194-2;Q14194 CRMP1 Dihydropyrimidinase-related protein 1 yes no 0 0 1 1 By MS/MS By MS/MS 2.4 1.02 1 2 1 1 4 1 66.065 65.918 4 4.0994E-42 22089 20211116_3429_TMUAki_TMT10x_P_F2 192.12 181.44 14622000 25397000 74043 21234000 17479000 34748000 20683000 24944000 23699000 23614000 21550000 13613000 23683000 1104900 22159000 16831000 34345000 20905000 25816000 23902000 23117000 20855000 8 8 2 8 8 8 8 8 8 8 8 12955000 22774000 42414 18962000 15274000 32518000 18862000 22541000 21213000 21013000 19044000 12061000 21236000 929780 19816000 14725000 32067000 19018000 23376000 21401000 20585000 18438000 7 7 1 7 7 7 7 7 7 7 7 1666300 2623900 31629 2272400 2204400 2230300 1820700 2403300 2485900 2600700 2506500 1551700 2447100 175160 2342400 2106000 2278600 1887400 2440700 2500600 2531800 2417300 1 1 1 1 1 1 1 1 1 1 1 5234600000 4582800000 651820000 9079 1691 8460 48710;48711;48712;48713;48714 59023;59024;59025;59026;59027;59028;59029;59030 59025 2263 8 ILENEKDLEEAEEYK Unmodified 1850.8786 0.87855405 323 O75347 TBCA Tubulin-specific chaperone A yes yes 0 0 0 1 By MS/MS By MS/MS 2 1.15 3 1 1 1 3 3 59.494 59.305 3;4 1.6865E-27 18204 20211116_3431_TMUAki_TMT10x_P_F4 165.75 127.39 41233000 79574000 67511 64616000 52140000 54808000 37808000 46931000 57051000 50924000 61300000 38391000 74195000 3328100 66829000 49618000 56263000 39695000 48233000 57349000 49571000 59003000 6 6 2 6 6 6 6 6 6 6 6 11110000 21272000 36971 17309000 25884000 30378000 20367000 13142000 15132000 13680000 15963000 10345000 19835000 1125600 18133000 24680000 29753000 20786000 14248000 15653000 13338000 15373000 2 2 1 2 2 2 2 2 2 2 2 30123000 58301000 30540 47308000 26256000 24431000 17441000 33788000 41919000 37244000 45337000 28046000 54360000 2202500 48696000 24938000 26510000 18909000 33985000 41696000 36232000 43630000 4 4 1 4 4 4 4 4 4 4 4 5417300000 3396600000 2020800000 9080 323 8461 48715;48716;48717;48718;48719;48720 59031;59032;59033;59034;59035;59036;59037 59033 7 ILENEKDLEEAEEYKEAR Unmodified 2207.0594 0.059371958 323 O75347 TBCA Tubulin-specific chaperone A yes yes 0 0 0 2 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 55.574 55.351 4 1.9838E-23 16169 20211116_3428_TMUAki_TMT10x_P_F1 169.39 154.78 52313000 113820000 247690 67936000 124410000 224820000 98537000 303020000 241300000 212370000 152470000 48708000 106040000 4772600 74893000 118640000 221110000 105720000 301430000 236080000 211150000 149830000 13 13 6 13 13 13 13 13 13 13 13 23864000 49450000 57277 28472000 75283000 161140000 68844000 138590000 110750000 95429000 64232000 22220000 46064000 2712900 32512000 72024000 155470000 71465000 140750000 109190000 94979000 63402000 5 5 3 5 5 5 5 5 5 5 5 28448000 64374000 190420 39464000 49123000 63679000 29693000 164430000 130550000 116940000 88234000 26488000 59975000 2059600 42381000 46613000 65643000 34257000 160680000 126890000 116170000 86426000 8 8 3 8 8 8 8 8 8 8 8 8112200000 5116900000 2995300000 9081 323 8462 48721;48722;48723;48724;48725;48726 59038;59039;59040;59041;59042;59043;59044;59045;59046;59047;59048;59049;59050 59038 13 ILEPDDFLDDLDDEDYEEDTPK Unmodified 2640.1126 0.1126489 2364 Q92785 DPF2 Zinc finger protein ubi-d4 yes yes 0 0 0 0 By MS/MS 1 0 1 1 80.52 80.52 3 1.4172E-07 26510 20211116_3428_TMUAki_TMT10x_P_F1 92.492 83.891 883590 1824300 11712 1361100 1182900 3160800 1532000 2146000 1952300 2012800 1898300 822790 1700600 88363 1448200 1143700 3086200 1548700 2229100 1965800 1971300 1832900 1 1 1 1 1 1 1 1 1 1 1 883590 1824300 11712 1361100 1182900 3160800 1532000 2146000 1952300 2012800 1898300 822790 1700600 88363 1448200 1143700 3086200 1548700 2229100 1965800 1971300 1832900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 584650000 584650000 0 9082 2364 8463 48727 59051 59051 1 ILEPGLNILIPVLDR Unmodified 1674.008 0.0079924964 3148 Q9UJZ1;Q9UJZ1-2 STOML2 Stomatin-like protein 2, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 3.33 1.7 1 1 1 2 1 81.628 81.627 3 1.3569E-06 26947 20211116_3428_TMUAki_TMT10x_P_F1 95.347 77.911 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9083 3148 8464 48728;48729;48730 59052;59053;59054 59052 3 ILETTTFFQR Unmodified 1254.6608 0.66083754 3025 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 By MS/MS 8 0 1 1 67.191 67.33 2 0.0006637 21143 20211116_3436_TMUAki_TMT10x_P_F8 101.46 77.903 12994000 18950000 233360 21168000 14361000 21423000 14923000 11282000 10627000 10983000 14312000 12100000 17691000 1313900 21442000 13799000 21581000 14975000 11973000 11130000 10739000 13692000 2 2 2 2 2 2 2 2 2 2 2 12994000 18950000 233360 21168000 14361000 21423000 14923000 11282000 10627000 10983000 14312000 12100000 17691000 1313900 21442000 13799000 21581000 14975000 11973000 11130000 10739000 13692000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 468120000 468120000 0 9084 3025 8465 48731 59055;59056 59055 2 ILEVHIDK Unmodified 965.55458 0.55458155 889 P31689;P31689-2 DNAJA1 DnaJ homolog subfamily A member 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.71 1.03 1 2 2 2 4 3 50.305 50.421 3 0.00047457 14954 20211116_3442_TMUAki_TMT10x_S_F4 124.92 27.287 29172000 43003000 236020 46504000 31026000 33985000 25559000 24493000 22472000 22893000 30516000 27163000 40139000 2628100 47007000 29624000 35181000 26116000 25334000 23282000 22424000 29188000 6 6 3 6 6 6 6 6 6 6 6 16095000 23134000 149800 25132000 18349000 23066000 13414000 13502000 12214000 12687000 16456000 14987000 21594000 1487700 25467000 17478000 23410000 13827000 14186000 12628000 12424000 15743000 3 3 2 3 3 3 3 3 3 3 3 13077000 19869000 86220 21372000 12677000 10920000 12145000 10992000 10258000 10206000 14060000 12176000 18545000 1140400 21541000 12146000 11771000 12289000 11148000 10654000 9999900 13445000 3 3 1 3 3 3 3 3 3 3 3 4033300000 1789400000 2244000000 9085 889 8466 48732;48733;48734;48735;48736;48737;48738 59057;59058;59059;59060;59061;59062 59060 6 ILEVHVDK Unmodified 951.53893 0.53893149 298 O60884 DNAJA2 DnaJ homolog subfamily A member 2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.22 1.31 1 2 2 2 2 5 4 45.716 45.743 3 0.00058609 11790 20211116_3444_TMUAki_TMT10x_S_F5 120.12 49.2 28836000 46796000 123830 45148000 30860000 35851000 29219000 32022000 29251000 28342000 32919000 26850000 43659000 2443700 46036000 29550000 37010000 29725000 32641000 29886000 27832000 31642000 8 8 5 8 8 8 8 8 8 8 8 13950000 22171000 68722 21154000 16127000 22204000 15051000 14781000 13607000 12826000 14954000 12989000 20684000 1208300 21668000 15438000 22388000 15278000 15344000 13954000 12607000 14383000 4 4 3 4 4 4 4 4 4 4 4 14886000 24625000 55112 23994000 14733000 13648000 14169000 17241000 15643000 15516000 17966000 13861000 22975000 1235300 24368000 14112000 14622000 14447000 17297000 15932000 15225000 17259000 4 4 2 4 4 4 4 4 4 4 4 3515500000 2028800000 1486700000 9086 298 8467 48739;48740;48741;48742;48743;48744;48745;48746;48747 59063;59064;59065;59066;59067;59068;59069;59070 59069 8 ILEVVKDK Unmodified 942.57498 0.57498264 747 P20674 COX5A Cytochrome c oxidase subunit 5A, mitochondrial yes yes 0 0 0 1 By MS/MS 6 0 1 1 53.287 53.407 3 0.0031008 15204 20211116_3445_TMUAki_TMT10x_S_F6 85.377 53.956 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9087 747 8468 48748 59071 59071 1 ILEYNNENDFLAGSPDAAIDSR Unmodified 2423.1241 0.12409748 7 A1L020 MEX3A RNA-binding protein MEX3A yes yes 0 0 0 0 By MS/MS By matching 2.5 0.5 1 1 1 1 74.472 74.276 3 3.6723E-14 25447 20211116_3429_TMUAki_TMT10x_P_F2 124.4 111.92 1300500 2022500 43502 1791500 1275900 2497500 1603700 1469600 1682600 1452200 1544000 1211200 1886300 148020 1854500 1234300 2477600 1612000 1545500 1703400 1419000 1493700 1 1 1 1 1 1 1 1 1 1 1 1300500 2022500 43502 1791500 1275900 2497500 1603700 1469600 1682600 1452200 1544000 1211200 1886300 148020 1854500 1234300 2477600 1612000 1545500 1703400 1419000 1493700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 306090000 177920000 128170000 9088 7 8469 48749;48750 59072 59072 1 ILFAPGSEEAIER Unmodified 1430.7405 0.74054442 1560 Q12756;Q12756-3;Q12756-2 KIF1A Kinesin-like protein KIF1A yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.764 4 1 1 1 5 61.97 61.688 2;3 2.5935E-18 21947 20211116_3441_TMUAki_TMT10x_S_F3 157.77 131.65 4765600 7852000 16180 7633200 5374900 6229000 4746400 4416900 3824500 4157600 6083200 4437100 7325900 390430 7781600 5137000 6391600 4818800 4574500 4011200 4071200 5798300 2 2 1 2 2 2 2 2 2 2 2 1901700 2992000 16180 3047700 2181500 3418200 2247900 1796600 1712700 1902800 2256800 1770800 2792100 176660 3110800 2094400 3422900 2260100 1911600 1785100 1854000 2160200 1 1 1 1 1 1 1 1 1 1 1 2863900 4860000 0 4585500 3193300 2810800 2498500 2620300 2111800 2254800 3826500 2666300 4533800 213770 4670800 3042600 2968600 2558700 2662800 2226100 2217200 3638200 1 1 0 1 1 1 1 1 1 1 1 1043700000 257880000 785790000 9089 1560 8470 48751;48752;48753;48754;48755;48756 59073;59074;59075;59076;59077 59075 5 ILFFNTPK Unmodified 978.55385 0.55385327 1076 P48556 PSMD8 26S proteasome non-ATPase regulatory subunit 8 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 71.061 71.053 2 0.0013921 23552 20211116_3442_TMUAki_TMT10x_S_F4 122.74 85.721 38441000 65088000 213300 54770000 45160000 66421000 44677000 50780000 47325000 47182000 49651000 35791000 60695000 3132700 56777000 43280000 66595000 45425000 52312000 48112000 46228000 47825000 4 4 2 4 4 4 4 4 4 4 4 20760000 35332000 127030 30140000 24800000 47791000 26210000 28206000 26260000 25579000 27114000 19329000 32949000 1628200 31378000 23805000 47157000 26514000 29587000 26743000 25090000 26129000 2 2 1 2 2 2 2 2 2 2 2 17681000 29756000 86261 24630000 20361000 18630000 18467000 22575000 21065000 21603000 22537000 16463000 27746000 1504400 25399000 19475000 19438000 18911000 22724000 21369000 21139000 21695000 2 2 1 2 2 2 2 2 2 2 2 2094900000 1175300000 919520000 9090 1076 8471 48757;48758;48759;48760 59078;59079;59080;59081 59080 4 ILFLDPSGK Unmodified 988.55933 0.55933258 452 O95881 TXNDC12 Thioredoxin domain-containing protein 12 yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 73.927 73.97 2 0.00022553 25805 20211116_3439_TMUAki_TMT10x_S_F1 133.58 62.24 47479000 73354000 846530 75973000 54173000 63095000 53005000 39705000 40231000 42378000 54439000 44214000 68457000 4768800 77127000 51963000 64546000 53431000 41630000 41992000 41278000 52075000 6 6 5 6 6 6 6 6 6 6 6 25808000 38208000 479930 39782000 28599000 41964000 28384000 21178000 21470000 22362000 29053000 24033000 35658000 2626000 40506000 27446000 42148000 28588000 22616000 22413000 21791000 27792000 3 3 3 3 3 3 3 3 3 3 3 21672000 35146000 366590 36191000 25574000 21131000 24621000 18528000 18762000 20016000 25386000 20181000 32799000 2142800 36621000 24517000 22397000 24843000 19013000 19578000 19487000 24284000 3 3 2 3 3 3 3 3 3 3 3 5118000000 3039200000 2078800000 9091 452 8472 48761;48762;48763;48764;48765;48766 59082;59083;59084;59085;59086;59087 59085 6 ILFQPQTNVYDSLAK Unmodified 1735.9145 0.91448604 389 O94855;O94855-2 SEC24D Protein transport protein Sec24D yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 75.96 75.914 3 6.9113E-10 24713 20211116_3436_TMUAki_TMT10x_P_F8 111.74 94.04 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9092 389 8473 48767;48768 59088;59089 59088 2 ILFRPVASQLPR Unmodified 1395.8351 0.83505393 924 P35232;P35232-2 PHB Prohibitin yes no 0 0 0 1 By MS/MS By MS/MS 6.5 0.957 1 2 2 1 4 2 52.266 52.704 3 1.3156E-22 14534 20211116_3434_TMUAki_TMT10x_P_F6 213.59 174.58 5142100 10154000 58983 9877300 11002000 9319100 5420900 11763000 8746200 7147800 9163600 4788300 9473700 563360 10088000 10412000 9583000 5893400 11698000 8767100 7171000 8826800 3 3 3 3 3 3 3 3 3 3 3 2035000 3815500 46334 3684000 5759500 7453800 3484800 4525500 3201000 2691200 3332400 1895100 3559800 264060 3824000 5468100 7295100 3645000 4694100 3273600 2703900 3210600 1 1 1 1 1 1 1 1 1 1 1 3107100 6338500 12649 6193300 5242300 1865300 1936000 7237200 5545200 4456600 5831200 2893200 5913900 299300 6263700 4944200 2287900 2248400 7003900 5493500 4467100 5616300 2 2 2 2 2 2 2 2 2 2 2 2036300000 868950000 1167400000 9093 924 8474 48769;48770;48771;48772;48773;48774 59090;59091;59092;59093;59094;59095 59091 6 ILFTEATR Unmodified 949.52328 0.52328142 1076 P48556 PSMD8 26S proteasome non-ATPase regulatory subunit 8 yes yes 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 4 2 51.494 51.813 2 0.0004623 14508 20211116_3445_TMUAki_TMT10x_S_F6 155.82 112.9 18353000 29294000 198700 30813000 25671000 27914000 19036000 24334000 22829000 21956000 25047000 17090000 27340000 1793900 31284000 24458000 28535000 19774000 24851000 23137000 21542000 24093000 4 4 3 4 4 4 4 4 4 4 4 8650600 13566000 120490 14342000 16986000 19712000 10904000 11227000 10777000 10252000 11625000 8055500 12661000 946230 14656000 16142000 19559000 11375000 11814000 10999000 10052000 11188000 2 2 2 2 2 2 2 2 2 2 2 9702800 15728000 78213 16472000 8684100 8202100 8132200 13107000 12052000 11705000 13422000 9034700 14679000 847710 16628000 8316500 8976100 8399000 13037000 12138000 11489000 12906000 2 2 1 2 2 2 2 2 2 2 2 1383600000 855610000 528030000 9094 1076 8475 48775;48776;48777;48778;48779;48780 59096;59097;59098;59099;59100 59099 5 ILGADTSVDLEETGR Unmodified 1574.7788 0.77878042 805 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 2.5 1.05 3 4 4 3 8 6 58.46 58.25 2;3 3.7786E-116 19396 20211116_3430_TMUAki_TMT10x_P_F3 375.33 318.9 60110000 99098000 443560 99117000 73788000 89623000 67016000 71892000 70791000 67338000 78135000 55968000 92469000 5175600 100970000 70582000 91489000 68448000 73854000 72113000 65953000 75146000 16 16 9 16 16 16 16 16 16 16 16 35749000 56842000 351380 57567000 48604000 67461000 42793000 41430000 40348000 39165000 45170000 33286000 53042000 3185900 58825000 46460000 67530000 43635000 43369000 41325000 38344000 43425000 9 9 5 9 9 9 9 9 9 9 9 24361000 42257000 92180 41549000 25185000 22162000 24222000 30462000 30443000 28173000 32964000 22682000 39427000 1989700 42147000 24122000 23960000 24813000 30484000 30788000 27609000 31721000 7 7 4 7 7 7 7 7 7 7 7 12411000000 6944300000 5467000000 9095 805 8476 48781;48782;48783;48784;48785;48786;48787;48788;48789;48790;48791;48792;48793;48794 59101;59102;59103;59104;59105;59106;59107;59108;59109;59110;59111;59112;59113;59114;59115;59116;59117;59118;59119 59107 19 ILGGVISAISEAAAQYNPEPPPPR Unmodified 2446.2856 0.28562392 490 P04632 CAPNS1 Calpain small subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.25 1.85 3 4 1 5 3 81.95 81.929 3;4 1.7522E-105 28536 20211116_3429_TMUAki_TMT10x_P_F2 306.69 294.05 3605200 5889200 48000 5709500 3964400 6139100 4478900 3679700 3940400 4028600 4672500 3356900 5494600 320200 5843800 3815200 6172400 4499600 3875800 4058200 3920200 4484700 9 9 5 9 9 9 9 9 9 9 9 2407200 3941800 36736 3955800 2362000 4818000 2878600 2561900 2768100 2798200 3158900 2241500 3678200 212720 4047400 2278700 4804400 2889500 2725700 2834800 2723100 3035200 6 6 3 6 6 6 6 6 6 6 6 1198000 1947300 11264 1753700 1602300 1321200 1600300 1117800 1172300 1230400 1513600 1115500 1816400 107480 1796300 1536500 1368000 1610100 1150100 1223400 1197000 1449500 3 3 2 3 3 3 3 3 3 3 3 1992400000 951120000 1041300000 9096 490 8477 48795;48796;48797;48798;48799;48800;48801;48802 59120;59121;59122;59123;59124;59125;59126;59127;59128 59120 9 ILGIPVIVTEQYPK Unmodified 1568.9178 0.91778051 2424 Q96CN7 ISOC1 Isochorismatase domain-containing protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.17 3.26 4 3 5 6 6 78.653 78.634 2;3 8.4166E-33 25732 20211116_3428_TMUAki_TMT10x_P_F1 222.28 202.52 36676000 61674000 376510 55366000 41021000 53452000 47329000 34618000 36556000 39866000 46221000 34150000 57525000 3242800 56900000 39500000 54148000 47344000 36305000 38003000 38719000 44289000 9 9 5 9 9 9 9 9 9 9 9 15778000 25575000 198350 22484000 14255000 27940000 19108000 13605000 14940000 16140000 18938000 14691000 23853000 1314800 23238000 13792000 27805000 18999000 14632000 15523000 15659000 18145000 4 4 2 4 4 4 4 4 4 4 4 20898000 36099000 178170 32882000 26766000 25512000 28221000 21013000 21615000 23726000 27283000 19459000 33672000 1928100 33662000 25708000 26343000 28345000 21673000 22480000 23060000 26143000 5 5 3 5 5 5 5 5 5 5 5 8726700000 4265900000 4460900000 9097 2424 8478 48803;48804;48805;48806;48807;48808;48809;48810;48811;48812;48813;48814 59129;59130;59131;59132;59133;59134;59135;59136;59137;59138 59129 10 ILGKCVVMFVK Carbamidomethyl (C) 1349.7563 0.7563346 2103 Q86U86;Q86U86-8;Q86U86-5;Q86U86-4;Q86U86-7;Q86U86-3;Q86U86-9;Q86U86-2 PBRM1 Protein polybromo-1 yes no 0 1 0 1 By MS/MS By MS/MS 7 0 2 1 1 51.464 52.056 4 0.1028 16247 20211116_3435_TMUAki_TMT10x_P_F7 51.927 18.518 5222400 8554200 34717 8621700 10793000 10084000 7322500 8733800 8508500 6954400 7336400 4862800 7982200 542770 8812600 10263000 10152000 7645700 8894800 8562500 6865400 7113400 2 2 1 2 2 2 2 2 2 2 2 4171600 6741300 0 6701200 9771800 9273000 6415100 7054300 7021900 5610200 5883800 3884200 6290200 423710 6877600 9285200 9238300 6701400 7241000 7076700 5538700 5711100 1 1 0 1 1 1 1 1 1 1 1 1050800 1812900 34717 1920400 1021000 810890 907340 1679500 1486600 1344300 1452600 978620 1692000 119050 1935000 978200 914040 944230 1653700 1485800 1326700 1402300 1 1 1 1 1 1 1 1 1 1 1 857010000 709210000 147800000 9098 2103 8479 48815;48816 59139 59139 15 1 ILGLAIESQDAGIK Unmodified 1426.8031 0.80314468 65 O00161;O00161-2 SNAP23 Synaptosomal-associated protein 23 yes no 0 0 0 0 By MS/MS 7 0 1 1 73.39 73.561 3 0.00085925 25570 20211116_3446_TMUAki_TMT10x_S_F7 72.88 48.537 6631400 11203000 98632 10229000 8149900 7476300 8494900 6672100 6542300 7240100 8251000 6175100 10450000 654470 10463000 7828600 7768000 8538200 6841300 6801700 7047700 7906600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6631400 11203000 98632 10229000 8149900 7476300 8494900 6672100 6542300 7240100 8251000 6175100 10450000 654470 10463000 7828600 7768000 8538200 6841300 6801700 7047700 7906600 2 2 1 2 2 2 2 2 2 2 2 484350000 0 484350000 9099 65 8480 48817 59140;59141 59141 2 ILGLGDLGVYGMGIPVGK Unmodified 1757.975 0.97497781 780 P23368;P23368-2 ME2 NAD-dependent malic enzyme, mitochondrial yes no 0 0 0 0 By MS/MS 3 0 1 1 80.725 80.688 3 2.3386E-12 29521 20211116_3441_TMUAki_TMT10x_S_F3 133.66 107.22 2940700 4358500 0 4426000 3070600 2337100 2841000 921530 826260 1500800 2333400 2737800 4067200 206290 4479200 2935900 2478000 2831400 1025700 982220 1441900 2204300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2940700 4358500 0 4426000 3070600 2337100 2841000 921530 826260 1500800 2333400 2737800 4067200 206290 4479200 2935900 2478000 2831400 1025700 982220 1441900 2204300 1 1 0 1 1 1 1 1 1 1 1 406790000 0 406790000 9100 780 8481 48818 59142 59142 1 ILGLLDAYLK Unmodified 1117.6747 0.67469669 821 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 By MS/MS By MS/MS 3.44 2.5 1 4 2 2 5 4 81.376 81.361 2;3 7.7598E-09 28787 20211116_3430_TMUAki_TMT10x_P_F3 176.79 109.76 70833000 106720000 62415 103140000 43702000 94642000 81635000 51749000 78662000 73948000 71096000 65943000 99566000 4350600 105350000 42783000 95976000 80731000 55444000 79887000 71307000 68818000 9 9 3 9 9 9 9 9 9 9 9 21999000 33525000 0 31227000 18954000 35789000 22628000 16917000 23441000 23605000 22732000 20481000 31273000 1516500 32087000 18249000 35754000 22785000 18353000 23787000 22779000 21951000 5 5 0 5 5 5 5 5 5 5 5 48834000 73194000 62415 71917000 24749000 58854000 59007000 34832000 55221000 50343000 48364000 45462000 68293000 2834100 73262000 24534000 60222000 57945000 37091000 56100000 48528000 46867000 4 4 3 4 4 4 4 4 4 4 4 11022000000 7843600000 3178800000 9101 821 8482 48819;48820;48821;48822;48823;48824;48825;48826;48827 59143;59144;59145;59146;59147;59148;59149;59150;59151 59146 9 ILGLLENF Unmodified 917.52222 0.52221879 2328 Q8WYA6;Q8WYA6-4;Q8WYA6-3;Q8WYA6-2 CTNNBL1 Beta-catenin-like protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 5 1.95 1 2 2 2 2 1 6 4 83.935 83.934 2 0.0039578 27690 20211116_3445_TMUAki_TMT10x_S_F6 99.511 90.828 2159600 3542000 14612 3240600 2720100 4106000 2727200 2875100 2777500 3142100 3047800 2010800 3303900 190620 3340200 2608600 4101900 2767500 2993400 2833000 3057700 2931800 9 9 5 9 9 9 9 9 9 9 9 1468000 2401400 13997 2230600 1764600 3240000 1906300 1865400 1858300 2043000 2027600 1366900 2240100 131090 2302800 1695900 3207500 1924800 1971300 1898600 1988000 1950700 5 5 3 5 5 5 5 5 5 5 5 691590 1140600 615.16 1010000 955500 866060 820880 1009700 919240 1099100 1020300 643930 1063800 59533 1037400 912700 894390 842740 1022000 934450 1069700 981090 4 4 2 4 4 4 4 4 4 4 4 261400000 130740000 130670000 9102 2328 8483 48828;48829;48830;48831;48832;48833;48834;48835;48836;48837 59152;59153;59154;59155;59156;59157;59158;59159;59160 59159 9 ILGPGLNK Unmodified 810.49634 0.49633839 1381 P62906 RPL10A 60S ribosomal protein L10a yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.04 2 2 2 2 4 4 50.831 50.887 2 0.00042057 15917 20211116_3429_TMUAki_TMT10x_P_F2 144.29 58.988 62488000 97123000 438990 100620000 75868000 79895000 64644000 65998000 66731000 64315000 75593000 58182000 90639000 5321900 102090000 72461000 82357000 66223000 67753000 68110000 62883000 72648000 8 8 5 8 8 8 8 8 8 8 8 31436000 46614000 70486 48119000 47728000 53896000 35239000 30809000 31791000 30640000 36027000 29270000 43502000 2820200 49070000 45449000 54031000 36291000 32485000 32643000 29932000 34623000 4 4 2 4 4 4 4 4 4 4 4 31053000 50508000 368500 52500000 28140000 25999000 29405000 35189000 34940000 33674000 39566000 28913000 47137000 2501700 53022000 27012000 28327000 29932000 35268000 35467000 32951000 38025000 4 4 3 4 4 4 4 4 4 4 4 6335200000 3757700000 2577400000 9103 1381 8484 48838;48839;48840;48841;48842;48843;48844;48845 59161;59162;59163;59164;59165;59166;59167;59168 59162 8 ILGPQGNTIK Unmodified 1039.6026 0.60259438 1538 Q07666;Q07666-2 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 3.2 2 1 3 4 2 46.843 46.925 2;3 2.498E-10 12354 20211116_3447_TMUAki_TMT10x_S_F8 197.96 133.23 16560000 25947000 178150 30819000 33444000 26623000 19386000 14976000 19619000 13698000 21302000 15420000 24229000 1687200 31033000 31719000 27119000 20407000 15776000 20008000 13431000 20497000 6 6 2 6 6 6 6 6 6 6 6 10614000 16251000 178150 19554000 28551000 23023000 14072000 10067000 12686000 9132900 13648000 9883700 15176000 1247700 19767000 27020000 22949000 14988000 10861000 13001000 8958100 13136000 4 4 2 4 4 4 4 4 4 4 4 5945800 9696200 0 11265000 4892700 3600400 5314200 4909200 6932900 4565600 7654200 5535900 9053500 439520 11267000 4699400 4170100 5418500 4915000 7007800 4473200 7361400 2 2 0 2 2 2 2 2 2 2 2 1288300000 921950000 366320000 9104 1538 8485 48846;48847;48848;48849;48850;48851 59169;59170;59171;59172;59173;59174 59174 6 ILGPQGNTIKR Unmodified 1195.7037 0.70370541 1538 Q07666;Q07666-2 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 37.281 37.126 3 3.8891E-08 10361 20211116_3429_TMUAki_TMT10x_P_F2 142.04 119.71 4035300 7510700 78652 5558000 10069000 10737000 6407500 8832300 8792800 7249200 7942400 3757800 7001000 492360 5885500 9567200 10576000 6764700 9028800 8810600 7145100 7688100 3 3 3 3 3 3 3 3 3 3 3 2384600 4216100 32868 3251300 6923100 7862400 4174700 5079800 4803400 3995900 4501800 2220600 3930500 291900 3454000 6571100 7662700 4397700 5272800 4848500 3947300 4352100 2 2 2 2 2 2 2 2 2 2 2 1650600 3294600 45784 2306700 3145700 2874400 2232800 3752500 3989400 3253300 3440600 1537300 3070500 200460 2431500 2996100 2913000 2366900 3756000 3962100 3197900 3336000 1 1 1 1 1 1 1 1 1 1 1 502110000 289560000 212550000 9105 1538 8486 48852;48853;48854 59175;59176;59177 59175 3 ILGQEGDASYLASEISTWDGVIVTPSEK Unmodified 2964.4604 0.46041298 1575 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 3.86 0.99 1 1 3 2 3 4 80.972 80.962 3;4 1.2415E-25 27481 20211116_3442_TMUAki_TMT10x_S_F4 158.18 146.21 7945600 13106000 170640 11745000 8916000 10846000 10355000 5827700 5834800 6887600 9451800 7398900 12225000 768900 12065000 8591500 10992000 10288000 6210200 6262000 6683100 9005800 7 7 4 7 7 7 7 7 7 7 7 4773400 7781600 81593 6878800 4796100 7527800 5900000 3404200 3303900 4116200 5666800 4444800 7257700 424350 7091000 4628300 7536100 5846600 3690600 3558600 3990800 5393400 4 4 2 4 4 4 4 4 4 4 4 3172200 5324800 89049 4866300 4119900 3318700 4454500 2423500 2530800 2771400 3785000 2954200 4966900 344550 4973700 3963200 3456200 4441400 2519600 2703400 2692300 3612400 3 3 2 3 3 3 3 3 3 3 3 4730200000 2376000000 2354200000 9106 1575 8487 48855;48856;48857;48858;48859;48860;48861 59178;59179;59180;59181;59182;59183;59184 59182 7 ILGSLYAASEDQEKR Unmodified 1678.8526 0.85261407 2006 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog yes yes 0 0 0 1 By MS/MS 5 0 1 1 55.754 55.951 3 6.5577E-07 17058 20211116_3433_TMUAki_TMT10x_P_F5 101.52 77.681 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9107 2006 8488 48862 59185 59185 1 ILGVGGEDDDGEVHR Unmodified 1566.7274 0.72741355 124 O14683 TP53I11 Tumor protein p53-inducible protein 11 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.816 1 1 1 1 2 40.636 40.591 3 2.2835E-05 10382 20211116_3440_TMUAki_TMT10x_S_F2 97.093 84.947 424540 717810 21867 861730 370250 294400 313110 661270 660890 548960 659600 395450 670340 54816 860460 354900 343150 331360 650450 657070 540770 636330 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 424540 717810 21867 861730 370250 294400 313110 661270 660890 548960 659600 395450 670340 54816 860460 354900 343150 331360 650450 657070 540770 636330 1 1 1 1 1 1 1 1 1 1 1 46282000 0 46282000 9108 124 8489 48863;48864;48865 59186;59187 59187 2 ILGVGPDDPDLVR Unmodified 1364.73 0.72997974 1073 P48449;P48449-2;P48449-3 LSS Lanosterol synthase yes no 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 63.766 63.676 2 4.6677E-09 19975 20211116_3431_TMUAki_TMT10x_P_F4 132.57 100.81 5055600 8723500 69507 8002400 6579900 12051000 7197700 7744900 8297800 8417300 7552800 4707700 8137200 488420 8275200 6327700 11930000 7302700 8111900 8367000 8193100 7309000 2 2 1 2 2 2 2 2 2 2 2 5055600 8723500 69507 8002400 6579900 12051000 7197700 7744900 8297800 8417300 7552800 4707700 8137200 488420 8275200 6327700 11930000 7302700 8111900 8367000 8193100 7309000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 705800000 705800000 0 9109 1073 8490 48866;48867 59188;59189 59189 2 ILHCLGLAEEIQK Unmodified 1522.8177 0.81774888 1195 P53004 BLVRA Biliverdin reductase A yes yes 0 0 0 0 By MS/MS By MS/MS 6.4 1.02 1 2 1 1 3 2 61.929 61.988 3 1.5549E-12 20069 20211116_3435_TMUAki_TMT10x_P_F7 126.12 102.51 13359000 21684000 159610 21417000 16693000 17486000 14927000 14706000 11502000 14655000 16134000 12440000 20232000 1303000 21809000 15972000 17994000 15128000 15091000 12016000 14315000 15421000 3 3 3 3 3 3 3 3 3 3 3 4747100 7285100 13286 6954500 6294100 9155000 5894000 4816900 4096100 4864300 5265800 4420100 6796500 427610 7151000 6025900 9093300 5943800 5117800 4287200 4748700 5043500 1 1 1 1 1 1 1 1 1 1 1 8612400 14399000 146320 14462000 10399000 8331100 9033400 9889300 7405900 9790600 10869000 8020100 13436000 875420 14658000 9945800 8900400 9184000 9973200 7728300 9566100 10377000 2 2 2 2 2 2 2 2 2 2 2 1490200000 704270000 785910000 9110 1195 8491 48868;48869;48870;48871;48872 59190;59191;59192;59193;59194 59191 5 ILHLLGQEGPK Unmodified 1203.6976 0.69755739 3339 Q9Y678 COPG1 Coatomer subunit gamma-1 yes yes 0 0 0 0 By MS/MS 8 0 1 1 54.912 54.844 3 2.1751E-06 15584 20211116_3447_TMUAki_TMT10x_S_F8 120.06 99.732 2875900 4951000 16181 4478300 3048400 2624300 2127500 4689500 3952100 3998800 3904500 2677900 4618100 255930 4574200 2900800 2834200 2262600 4643000 3939100 3933900 3768000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2875900 4951000 16181 4478300 3048400 2624300 2127500 4689500 3952100 3998800 3904500 2677900 4618100 255930 4574200 2900800 2834200 2262600 4643000 3939100 3933900 3768000 1 1 1 1 1 1 1 1 1 1 1 210250000 0 210250000 9111 3339 8492 48873 59195 59195 1 ILHLLTQEALSIHGVK Unmodified 1771.0356 0.03560423 1229 P54886;P54886-2 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes no 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 75.129 75.022 4 9.8024E-30 24379 20211116_3431_TMUAki_TMT10x_P_F4 196.95 183.83 6264700 10459000 48656 9779100 7017500 12388000 7221800 7136100 7535800 7480400 7632300 5833000 9757000 529210 10063000 6733800 12341000 7324400 7530800 7656000 7291600 7359600 6 6 3 6 6 6 6 6 6 6 6 4441900 7091300 43127 6612900 4839800 10190000 5011000 4957200 5244200 5246800 5250500 4135900 6615200 388740 6833500 4645900 10042000 5081100 5312900 5325100 5112400 5064800 4 4 2 4 4 4 4 4 4 4 4 1822800 3367900 5528.4 3166200 2177700 2198100 2210800 2178900 2291500 2233600 2381800 1697100 3141900 140470 3229800 2087900 2298500 2243200 2218000 2330900 2179200 2294900 2 2 1 2 2 2 2 2 2 2 2 2619000000 1750200000 868770000 9112 1229 8493 48874;48875;48876;48877;48878 59196;59197;59198;59199;59200;59201 59199 6 ILHLPTSWDWR Unmodified 1422.7408 0.74081919 1208 P53634 CTSC Dipeptidyl peptidase 1;Dipeptidyl peptidase 1 exclusion domain chain;Dipeptidyl peptidase 1 heavy chain;Dipeptidyl peptidase 1 light chain yes yes 0 0 0 0 By MS/MS 3 0 1 1 71.939 71.717 3 0.0018602 24920 20211116_3430_TMUAki_TMT10x_P_F3 68.355 53.212 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9113 1208 8494 48879 59202 59202 1 ILHLQGEGDIVPK Unmodified 1417.7929 0.79291434 415 O95235;O95235-2 KIF20A Kinesin-like protein KIF20A yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 53.947 54.047 3 1.6313E-05 15497 20211116_3445_TMUAki_TMT10x_S_F6 100.73 75.068 9158400 14923000 260370 17641000 11672000 12042000 9288000 12601000 11464000 11351000 13014000 8529300 13935000 1037200 17721000 11148000 12626000 9613300 12746000 11623000 11137000 12506000 3 3 3 3 3 3 3 3 3 3 3 2966600 4482400 43526 5464100 5624300 6650200 4122000 4180800 3595700 3548100 3935400 2762500 4186200 323740 5522700 5357700 6646100 4243400 4356400 3693100 3491400 3785900 1 1 1 1 1 1 1 1 1 1 1 6191800 10441000 216850 12177000 6048100 5391900 5166000 8420500 7868600 7802800 9078800 5766800 9748900 713430 12199000 5790100 5979500 5369900 8390100 7929700 7646100 8720500 2 2 2 2 2 2 2 2 2 2 2 493110000 236110000 257000000 9114 415 8495 48880;48881 59203;59204;59205 59204 3 ILHVNGFNGEGGEEDPQAAR Unmodified 2108.9875 0.98754442 1393 P63092;Q5JWF2;P63092-4 GNAS Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas yes no 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 2 3 44.553 44.556 3 9.8486E-33 13749 20211116_3430_TMUAki_TMT10x_P_F3 195.57 185.57 1762600 2786200 1381.3 3201300 2804100 2934100 1801700 2728700 3112800 2412700 2637200 1640900 2601400 126990 3232500 2661300 3000900 1920600 2775300 3092500 2369400 2558700 4 4 1 4 4 4 4 4 4 4 4 840920 1385800 0 1573500 2102500 2335000 1243100 1343800 1528200 1118400 1333200 782870 1293800 74021 1603300 1993500 2309500 1314700 1409500 1535300 1101500 1292100 2 2 0 2 2 2 2 2 2 2 2 921690 1400400 1381.3 1627900 701530 599040 558610 1384900 1584700 1294400 1304000 858020 1307600 52967 1629200 667750 691380 605860 1365700 1557300 1267900 1266600 2 2 1 2 2 2 2 2 2 2 2 785280000 461450000 323830000 9115 1393 8496 48882;48883;48884;48885;48886 59206;59207;59208;59209 59206 4 ILIAKPIMFR Oxidation (M) 1216.7366 0.73658544 3188 Q9UN86;Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 yes no 0 0 1 1 By MS/MS 6.5 0.5 1 1 2 59.084 59.352 3 0.050577 17726 20211116_3445_TMUAki_TMT10x_S_F6 53.751 28.192 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9116 3188 8497 48887;48888 59210;59211 59210 3181 2 ILIAKPIMFR Unmodified 1200.7417 0.74167082 3188 Q9UN86;Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 yes no 0 0 0 1 By MS/MS 8 0 1 1 65.456 65.402 3 1.0713E-08 19857 20211116_3447_TMUAki_TMT10x_S_F8 125.71 83.114 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9117 3188 8497 48889 59212 59212 1 ILIANTGMDTDKIK Oxidation (M) 1547.8229 0.82289384 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 1 1 By MS/MS By MS/MS 6.75 0.433 1 3 2 2 50.813 51.395 3 0.00022488 15890 20211116_3435_TMUAki_TMT10x_P_F7 78.486 58.647 2050300 4335600 40777 2558800 3569000 4168900 2359000 10473000 10913000 7160400 6250500 1909300 4038900 229250 2759900 3394200 4289300 2720900 10231000 10562000 7129700 6174000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2050300 4335600 40777 2558800 3569000 4168900 2359000 10473000 10913000 7160400 6250500 1909300 4038900 229250 2759900 3394200 4289300 2720900 10231000 10562000 7129700 6174000 1 1 1 1 1 1 1 1 1 1 1 1694900000 885050000 809890000 9118 1429 8498 48890;48891;48892;48893 59213;59214;59215 59213 1927 3 ILIEDWK Unmodified 915.50657 0.50656873 666 P14314;P14314-2 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 0 By MS/MS 5 0 1 1 69.04 69.129 2 0.087503 22476 20211116_3433_TMUAki_TMT10x_P_F5 60.682 27.561 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9119 666 8499 48894 59216 59216 1 ILIEDWKK Unmodified 1043.6015 0.60153174 666 P14314;P14314-2 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 59.272 59.576 3 0.0018408 19097 20211116_3435_TMUAki_TMT10x_P_F7 90.629 62.23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9120 666 8500 48895;48896;48897 59217;59218;59219 59217 3 ILIFSSR Unmodified 834.49634 0.49633839 2280 Q8TDN6 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.707 1 2 1 1 3 59.449 59.459 2 0.0015929 18251 20211116_3431_TMUAki_TMT10x_P_F4 148.21 76.828 7186200 11862000 36880 12174000 11162000 12724000 8174000 10030000 9328700 8961300 10026000 6690800 11070000 627660 12406000 10626000 12868000 8483200 10302000 9464500 8796100 9649700 2 2 1 2 2 2 2 2 2 2 2 3917600 6516700 36880 6514400 7532900 9972700 5480900 5640100 5315400 4953800 5417000 3647900 6080800 409800 6697600 7173500 9848800 5661700 5932600 5418400 4866400 5222500 1 1 1 1 1 1 1 1 1 1 1 3268600 5345300 0 5660000 3628900 2751300 2693100 4389700 4013300 4007400 4608500 3042900 4988900 217860 5708500 3452200 3019100 2821500 4369000 4046200 3929600 4427200 1 1 0 1 1 1 1 1 1 1 1 624880000 356130000 268750000 9121 2280 8501 48898;48899;48900;48901 59220;59221;59222;59223 59220 4 ILIIGESGVGK Unmodified 1084.6492 0.64921022 2880 Q9NP72;Q9NP72-2;Q9NP72-3 RAB18 Ras-related protein Rab-18 yes no 0 0 0 0 By MS/MS 7 0 1 1 63.593 64.264 2 0.085103 21153 20211116_3435_TMUAki_TMT10x_P_F7 47.561 24.038 13934000 20309000 0 17422000 14844000 29287000 13579000 20685000 23257000 21553000 17716000 12970000 18940000 773460 18155000 14176000 28910000 14140000 21492000 23040000 21014000 17262000 2 2 0 2 2 2 2 2 2 2 2 13934000 20309000 0 17422000 14844000 29287000 13579000 20685000 23257000 21553000 17716000 12970000 18940000 773460 18155000 14176000 28910000 14140000 21492000 23040000 21014000 17262000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 408590000 408590000 0 9122 2880 8502 48902 59224;59225 59224 2 ILILGLDGAGK Unmodified 1068.6543 0.6542956 984 P40616;P40616-2 ARL1 ADP-ribosylation factor-like protein 1 yes no 0 0 0 0 By MS/MS 1 0 1 1 76.174 76.174 2 5.2145E-05 24705 20211116_3428_TMUAki_TMT10x_P_F1 101.54 61.112 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9123 984 8503 48903 59226 59226 1 ILIQHQK Unmodified 878.53379 0.53378653 230 O43670;O43670-2;O43670-3;O43670-4 ZNF207 BUB3-interacting and GLEBS motif-containing protein ZNF207 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 33.531 33.536 3 0.00058989 9325 20211116_3439_TMUAki_TMT10x_S_F1 148.07 58.4 2756600 4438200 50860 4584400 3666600 3221300 3179300 1738200 2066600 2033900 3179500 2567100 4141900 288690 4646100 3506500 3332400 3215900 1851000 2190600 1974200 3032700 2 2 2 2 2 2 2 2 2 2 2 1222300 1893800 25231 1948600 1972200 2043100 1439700 807750 983260 887140 1374600 1138200 1767300 135350 1985500 1879100 2047800 1474100 885990 1034200 863160 1313900 1 1 1 1 1 1 1 1 1 1 1 1534400 2544400 25628 2635700 1694400 1178200 1739500 930480 1083300 1146700 1804900 1428800 2374500 153340 2660600 1627400 1284600 1741800 965020 1156400 1111100 1718700 1 1 1 1 1 1 1 1 1 1 1 106030000 44033000 61995000 9124 230 8504 48904;48905 59227;59228 59228 2 ILIRPMYSNPPLNGAR Oxidation (M) 1826.9825 0.9825228 471 P00505;P00505-2 GOT2 Aspartate aminotransferase, mitochondrial yes no 0 0 1 1 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 47.197 47.243 3 2.081E-06 13438 20211116_3433_TMUAki_TMT10x_P_F5 101.62 80.561 17981000 30141000 114620 37776000 31376000 31171000 19722000 24554000 26310000 21421000 26083000 16742000 28153000 1713000 37900000 29794000 32013000 20818000 25205000 26470000 21050000 25168000 7 7 4 7 7 7 7 7 7 7 7 11119000 18125000 64109 22871000 24705000 26417000 14702000 14802000 15907000 12812000 15458000 10353000 16930000 1126600 23050000 23438000 26432000 15473000 15576000 16114000 12595000 14926000 4 4 3 4 4 4 4 4 4 4 4 6862000 12016000 50515 14906000 6671000 4753300 5019800 9752300 10403000 8609400 10624000 6389400 11223000 586370 14850000 6356300 5580900 5344800 9628900 10355000 8455400 10242000 3 3 1 3 3 3 3 3 3 3 3 5023200000 2878100000 2145100000 9125 471 8505 48906;48907;48908;48909;48910;48911 59229;59230;59231;59232;59233;59234;59235 59232 362 7 ILITTVPPNLR Unmodified 1235.7602 0.76015765 1575 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 3.15 0.769 3 5 5 6 7 63.838 63.619 2;3 1.7624E-14 21543 20211116_3430_TMUAki_TMT10x_P_F3 190.26 125.49 104910000 171200000 1235100 170180000 128220000 133480000 138690000 95131000 84777000 92522000 132330000 97686000 159740000 9790200 173130000 123260000 137380000 138460000 98580000 90293000 90469000 126180000 18 18 12 18 18 18 18 18 18 18 18 49194000 79230000 319310 77078000 58468000 83193000 67590000 45054000 40857000 45205000 61944000 45804000 73922000 4159200 78876000 56288000 83517000 67255000 47737000 43483000 44143000 59102000 9 9 5 9 9 9 9 9 9 9 9 55715000 91971000 915820 93098000 69757000 50286000 71096000 50077000 43920000 47317000 70384000 51882000 85823000 5631000 94256000 66973000 53865000 71204000 50843000 46810000 46326000 67078000 9 9 7 9 9 9 9 9 9 9 9 6332100000 3355100000 2976900000 9126 1575 8506 48912;48913;48914;48915;48916;48917;48918;48919;48920;48921;48922;48923;48924 59236;59237;59238;59239;59240;59241;59242;59243;59244;59245;59246;59247;59248;59249;59250;59251;59252;59253;59254;59255;59256;59257;59258 59239 23 ILIVGEPGFGQGSHLAPAVIHALEK Unmodified 2552.4115 0.41149314 2014 Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 76.316 76.283 4 4.9349E-17 26730 20211116_3439_TMUAki_TMT10x_S_F1 131.42 114.05 23046000 37121000 77216 33582000 21893000 34554000 23855000 17825000 18787000 21881000 24244000 21457000 34624000 1806500 34523000 21035000 34765000 23938000 19089000 19528000 21203000 23218000 5 5 3 5 5 5 5 5 5 5 5 15753000 25215000 43422 22382000 13323000 27191000 15657000 11186000 12346000 14448000 16078000 14667000 23518000 1160900 23106000 12826000 27044000 15657000 12278000 12838000 13976000 15394000 3 3 2 3 3 3 3 3 3 3 3 7292500 11906000 33794 11200000 8569700 7363000 8198200 6639500 6440700 7433200 8166500 6790200 11107000 645520 11418000 8209200 7721300 8280800 6810900 6690400 7227000 7824500 2 2 1 2 2 2 2 2 2 2 2 3485900000 2024600000 1461300000 9127 2014 8507 48925;48926;48927;48928 59259;59260;59261;59262;59263 59262 5 ILIVGGGVAGLASAGAAK Unmodified 1523.9035 0.90352742 1630 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 74.091 73.984 2;3 1.1644E-21 24199 20211116_3431_TMUAki_TMT10x_P_F4 150.14 135.98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9128 1630 8508 48929;48930;48931 59264;59265;59266 59264 3 ILKGEYAVR Unmodified 1047.6077 0.60767975 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 1 By MS/MS By MS/MS 5.17 3.02 2 1 1 2 4 2 39.999 40.131 3 0.043255 12091 20211116_3439_TMUAki_TMT10x_S_F1 49.189 18.531 26809000 45492000 37970 37766000 44795000 39481000 31818000 26657000 25874000 24920000 34089000 24961000 42420000 2471200 39099000 42625000 39827000 32769000 27698000 26874000 24410000 32630000 5 5 3 5 5 5 5 5 5 5 5 12227000 20025000 18053 16965000 26978000 26621000 15256000 13764000 12259000 11649000 15359000 11385000 18674000 1230200 17668000 25573000 26236000 15995000 14580000 12713000 11464000 14721000 3 3 2 3 3 3 3 3 3 3 3 14581000 25467000 19916 20801000 17818000 12860000 16561000 12893000 13615000 13272000 18730000 13577000 23746000 1240900 21431000 17052000 13591000 16773000 13118000 14161000 12946000 17910000 2 2 1 2 2 2 2 2 2 2 2 2317500000 1553700000 763760000 9129 2334 8509 48932;48933;48934;48935;48936;48937 59267;59268;59269;59270;59271 59270 5 ILKLPSFELLHK Unmodified 1436.8755 0.87552176 1847 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 69.109 69.111 4 2.3568E-07 22208 20211116_3431_TMUAki_TMT10x_P_F4 131.32 84.062 14695000 24217000 63519 17115000 20463000 27738000 17158000 19595000 16809000 17165000 18257000 13683000 22571000 1293400 18121000 19538000 27419000 17566000 20261000 17167000 16864000 17567000 5 5 4 5 5 5 5 5 5 5 5 9307600 14887000 31774 10810000 12479000 21830000 12280000 12425000 10288000 10838000 11463000 8666000 13876000 780730 11481000 11958000 21347000 12405000 13060000 10595000 10650000 11021000 3 3 2 3 3 3 3 3 3 3 3 5387800 9330700 31745 6305500 7984500 5908100 4877600 7170600 6520700 6327200 6793900 5016800 8695200 512640 6640400 7579800 6071700 5160900 7201600 6571500 6214200 6545400 2 2 2 2 2 2 2 2 2 2 2 4424500000 2166100000 2258400000 9130 1847 8510 48938;48939;48940;48941 59272;59273;59274;59275;59276 59272 5 ILLAELEQLK Unmodified 1168.7067 0.7067251 561 P08670 VIM Vimentin yes yes 0 0 0 0 By MS/MS By MS/MS 6.07 1.39 1 1 2 4 4 2 8 6 79.821 79.832 2;3 6.6807E-14 25668 20211116_3434_TMUAki_TMT10x_P_F6 222.42 147.21 83576000 140250000 344110 127560000 94714000 119730000 98229000 61862000 70859000 72726000 101510000 77817000 130820000 7032200 130910000 90901000 121150000 98607000 66143000 74372000 70581000 96978000 11 11 5 11 11 11 11 11 11 11 11 46276000 74541000 28866 67941000 43081000 76090000 51037000 34530000 38590000 41517000 54121000 43086000 69530000 3602500 69899000 41496000 76079000 50968000 37415000 40355000 40259000 51728000 6 6 1 6 6 6 6 6 6 6 6 37300000 65705000 315240 59622000 51632000 43639000 47192000 27332000 32268000 31210000 47393000 34731000 61287000 3429700 61015000 49405000 45076000 47639000 28729000 34017000 30321000 45250000 5 5 4 5 5 5 5 5 5 5 5 17219000000 7842200000 9376800000 9131 561 8511 48942;48943;48944;48945;48946;48947;48948;48949;48950;48951;48952;48953;48954;48955 59277;59278;59279;59280;59281;59282;59283;59284;59285;59286;59287;59288;59289 59280 13 ILLAELEQLKGQGK Unmodified 1538.9032 0.90319307 561 P08670 VIM Vimentin yes yes 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 77.909 77.868 3 0.00027814 26870 20211116_3429_TMUAki_TMT10x_P_F2 76.358 35.266 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9132 561 8512 48956;48957 59290;59291 59290 2 ILLANFLAQTEALMR Oxidation (M) 1718.9389 0.93892665 522;55 CON__Q3ZBD7;P06744;P06744-2 GPI Glucose-6-phosphate isomerase no no 0 0 1 0 By MS/MS By MS/MS 4.77 1.05 2 3 4 4 7 6 80.89 80.884 2;3 5.3011E-10 26171 20211116_3444_TMUAki_TMT10x_S_F5 139.29 119.07 + 26887000 45582000 93266 41587000 34181000 42695000 32818000 31585000 29644000 31809000 35156000 25034000 42518000 1967500 42724000 32733000 43176000 33262000 32681000 30492000 31057000 33743000 14 14 5 14 14 14 14 14 14 14 14 13085000 22115000 67325 20137000 14105000 26335000 14367000 15231000 14739000 14997000 17348000 12183000 20628000 968160 20775000 13530000 26196000 14571000 16039000 15071000 14656000 16654000 7 7 4 7 7 7 7 7 7 7 7 13802000 23467000 25941 21450000 20076000 16360000 18451000 16354000 14904000 16812000 17807000 12851000 21890000 999310 21949000 19203000 16980000 18691000 16642000 15421000 16401000 17088000 7 7 1 7 7 7 7 7 7 7 7 12182000000 5937100000 6244600000 9133 55;522 8513 48958;48959;48960;48961;48962;48963;48964;48965;48966;48967;48968;48969;48970 59292;59293;59294;59295;59296;59297;59298;59299;59300;59301;59302;59303;59304;59305 59301 24 14 ILLDHEK Unmodified 866.48617 0.48616764 1218 P54136;P54136-2 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 38.349 38.434 3 0.0023015 9878 20211116_3431_TMUAki_TMT10x_P_F4 104.75 27.972 3739200 5836500 0 5743700 6451200 6909100 4604000 3816400 3793300 3477400 4563600 3481300 5445700 313860 5883500 6137000 6897100 4741500 4026200 3921900 3410100 4378500 3 3 0 3 3 3 3 3 3 3 3 3475700 5376800 0 5302100 6139900 6645000 4284800 3508100 3503700 3196900 4210900 3236000 5016900 293350 5434400 5838500 6616200 4419000 3715800 3623700 3135000 4040200 2 2 0 2 2 2 2 2 2 2 2 263480 459620 0 441580 311260 264080 319230 308300 289680 280500 352670 245310 428810 20504 449110 298520 280970 322480 310390 298230 275100 338260 1 1 0 1 1 1 1 1 1 1 1 143760000 98185000 45578000 9134 1218 8514 48971;48972;48973;48974;48975 59306;59307;59308;59309 59306 4 ILLDIDNDTESTAL Unmodified 1531.7617 0.76173337 1965 Q68EM7;Q68EM7-2;Q68EM7-7;Q68EM7-3 ARHGAP17 Rho GTPase-activating protein 17 yes no 0 0 0 0 By MS/MS 1 0 1 1 80.838 80.809 2 0.00097816 28542 20211116_3439_TMUAki_TMT10x_S_F1 70.1 57.874 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9135 1965 8515 48976 59310 59310 1 ILLELLNQMDGFDQNVNVK Oxidation (M) 2218.1304 0.13036883 1032 P43686;P43686-2 PSMC4 26S protease regulatory subunit 6B yes no 0 0 1 0 By MS/MS By MS/MS 6 0.816 1 1 1 1 2 80.947 80.952 3 4.9956E-07 28240 20211116_3435_TMUAki_TMT10x_P_F7 87.85 73.978 3589600 5748900 64617 5727000 4317200 4414200 4822200 3948100 3955700 4318700 4360100 3342700 5364300 368010 5824400 4156100 4567400 4838200 4048800 4076500 4202600 4193500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3589600 5748900 64617 5727000 4317200 4414200 4822200 3948100 3955700 4318700 4360100 3342700 5364300 368010 5824400 4156100 4567400 4838200 4048800 4076500 4202600 4193500 2 2 2 2 2 2 2 2 2 2 2 591830000 0 591830000 9136 1032 8516 48977;48978;48979 59311;59312;59313 59311 1333 3 ILLGGYQSR Unmodified 1005.5607 0.56072956 2574 Q99459 CDC5L Cell division cycle 5-like protein yes yes 0 0 0 0 By MS/MS 2 0 1 1 49.56 49.431 2 0.018164 14056 20211116_3440_TMUAki_TMT10x_S_F2 66.429 44.281 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9137 2574 8517 48980 59314 59314 1 ILLHSLR Unmodified 850.53887 0.53887191 1954 Q5VZ89;Q5VZ89-5;Q5VZ89-3;Q5VZ89-7 DENND4C DENN domain-containing protein 4C yes no 0 0 0 0 By MS/MS 3 0 1 1 39.049 38.777 3 0.0052546 12542 20211116_3441_TMUAki_TMT10x_S_F3 94.262 0 145350 229120 3093 261110 152150 145240 159330 192900 173420 182490 235850 135360 213910 15028 262390 146250 156180 161680 193410 178020 178660 225580 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 145350 229120 3093 261110 152150 145240 159330 192900 173420 182490 235850 135360 213910 15028 262390 146250 156180 161680 193410 178020 178660 225580 1 1 1 1 1 1 1 1 1 1 1 16737000 0 16737000 9138 1954 8518 48981 59315 59315 1 ILLLGLDNAGK Unmodified 1125.6758 0.67575932 947 P36405 ARL3 ADP-ribosylation factor-like protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 4.14 3.36 3 1 3 2 5 76.977 76.938 2;3 1.6399E-23 24966 20211116_3428_TMUAki_TMT10x_P_F1 250.12 183.09 43848000 72752000 279210 70700000 52756000 65646000 51619000 48379000 48516000 49658000 58951000 40828000 67877000 3874800 72195000 50563000 66800000 52322000 50099000 49863000 48446000 56545000 6 6 3 6 6 6 6 6 6 6 6 19035000 30716000 0 29522000 22608000 37959000 22393000 21121000 20926000 20918000 24113000 17722000 28657000 1502900 30327000 21664000 37771000 22680000 22318000 21466000 20438000 23162000 2 2 0 2 2 2 2 2 2 2 2 24813000 42036000 279210 41178000 30147000 27688000 29226000 27259000 27590000 28740000 34838000 23106000 39220000 2371900 41867000 28899000 29029000 29643000 27781000 28397000 28008000 33383000 4 4 3 4 4 4 4 4 4 4 4 4770700000 2496900000 2273900000 9139 947 8519 48982;48983;48984;48985;48986;48987;48988 59316;59317;59318;59319;59320;59321;59322 59316 7 ILLSSGR Unmodified 744.44939 0.4493882 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 3 2.1 1 2 1 1 2 3 40.366 40.24 2 0.0012651 10070 20211116_3428_TMUAki_TMT10x_P_F1 139.54 0 7452400 11739000 6526.8 12492000 17125000 15140000 9610100 9895000 10942000 8890200 10605000 6938900 10956000 748280 12731000 16231000 15142000 10182000 10295000 11061000 8724000 10240000 3 3 1 3 3 3 3 3 3 3 3 6313400 9830100 6526.8 10528000 15974000 14226000 8495600 8325300 9534000 7545200 9046400 5878400 9175100 661500 10746000 15129000 14132000 9040700 8739000 9636400 7401200 8741800 2 2 1 2 2 2 2 2 2 2 2 1139100 1908800 0 1964200 1150300 913630 1114400 1569700 1407600 1344900 1558500 1060500 1781300 86779 1984100 1101600 1010300 1141400 1556100 1424500 1322800 1498700 1 1 0 1 1 1 1 1 1 1 1 742940000 542300000 200640000 9140 1429 8520 48989;48990;48991;48992;48993 59323;59324;59325;59326 59323 4 ILLTQENPFFR Unmodified 1376.7452 0.74523587 1552 Q08J23;Q08J23-2;Q08J23-3 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 77.462 77.405 2 1.3938E-19 26678 20211116_3429_TMUAki_TMT10x_P_F2 236.66 177.42 37393000 59407000 224550 53920000 42159000 58317000 45390000 40997000 38762000 40497000 47536000 34815000 55412000 2996600 55460000 40494000 58749000 45666000 42542000 40035000 39572000 45585000 5 5 2 5 5 5 5 5 5 5 5 21835000 33488000 49633 31228000 20716000 40040000 24991000 23288000 21747000 23026000 27053000 20328000 31239000 1477100 32149000 19950000 39870000 25025000 24515000 22454000 22500000 25933000 3 3 1 3 3 3 3 3 3 3 3 15558000 25919000 174920 22692000 21443000 18277000 20399000 17709000 17015000 17471000 20483000 14487000 24173000 1519500 23311000 20544000 18879000 20641000 18027000 17581000 17073000 19652000 2 2 1 2 2 2 2 2 2 2 2 6502200000 3091600000 3410600000 9141 1552 8521 48994;48995;48996;48997;48998 59327;59328;59329;59330 59327 4 ILLWDTR Unmodified 915.5178 0.51780212 2627 Q9BQA1;Q9BQA1-2 WDR77 Methylosome protein 50 yes no 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 2 1 66.579 66.597 2 0.0073078 20900 20211116_3428_TMUAki_TMT10x_P_F1 119.56 78.871 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9142 2627 8522 48999;49000;49001 59331;59332;59333 59331 3 ILMAAPGMAIPPFIMNTLEK Oxidation (M) 2173.1349 0.13492562 2841 Q9H9B4 SFXN1 Sideroflexin-1 yes yes 0 0 1 0 By MS/MS By matching 3 0 2 1 1 81.387 81.342 3 7.8412E-05 28780 20211116_3430_TMUAki_TMT10x_P_F3 69.422 53.116 1391500 2453400 46713 2217200 1525400 2478500 1796800 1315600 1421800 1376400 1677200 1296000 2288400 160770 2282500 1472300 2482700 1796800 1398100 1471900 1341700 1610100 1 1 1 1 1 1 1 1 1 1 1 1391500 2453400 46713 2217200 1525400 2478500 1796800 1315600 1421800 1376400 1677200 1296000 2288400 160770 2282500 1472300 2482700 1796800 1398100 1471900 1341700 1610100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 368490000 234490000 134010000 9143 2841 8523 49002;49003 59334 59334 2971 1 ILMEHIHK Oxidation (M) 1035.5535 0.55353569 1456 P84098 RPL19 60S ribosomal protein L19 yes yes 0 0 1 0 By MS/MS By MS/MS 5.5 1 1 4 1 2 6 2 32.045 32.162 3;4 0.0050311 4111 20211116_3444_TMUAki_TMT10x_S_F5 78.77 38.338 6362200 10287000 121970 9665300 8741500 10044000 7061100 6232700 6527700 5919500 7931700 5924800 9596900 673320 9909800 8346900 10123000 7233700 6519900 6713900 5794200 7608000 6 6 5 6 6 6 6 6 6 6 6 4065500 6535000 71197 6212700 6261300 7588300 4523400 3932100 4159500 3700500 4964800 3785900 6096600 433010 6381300 5964200 7563500 4667900 4175400 4276000 3623700 4764400 5 5 4 5 5 5 5 5 5 5 5 2296800 3752400 50776 3452600 2480200 2455300 2537600 2300600 2368200 2219000 2966900 2138900 3500200 240310 3528500 2382700 2559300 2565800 2344500 2437900 2170500 2843600 1 1 1 1 1 1 1 1 1 1 1 916230000 605320000 310920000 9144 1456 8524 49004;49005;49006;49007;49008;49009;49010;49011 59335;59336;59337;59338;59339;59340 59340 1959 6 ILMEHIHK Unmodified 1019.5586 0.55862107 1456 P84098 RPL19 60S ribosomal protein L19 yes yes 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 4 1 37.264 37.581 3;4 0.00092627 9062 20211116_3436_TMUAki_TMT10x_P_F8 114.93 83.56 3285800 4897200 38520 5248600 4823900 3797500 3377300 1340800 1152300 1572800 3010200 3059600 4570900 320920 5307900 4590800 3902900 3432500 1494100 1335600 1526500 2846400 8 8 7 8 8 8 8 8 8 8 8 3042300 4508100 36765 4842100 4620600 3645600 3141700 1243500 1084200 1455400 2782600 2832900 4207800 299660 4898300 4394900 3733800 3200400 1391900 1253300 1412700 2631700 7 7 6 7 7 7 7 7 7 7 7 243520 389100 1755.5 406460 203360 151800 235630 97275 68136 117370 227690 226760 363130 21263 409620 195910 169130 232130 102260 82307 113800 214700 1 1 1 1 1 1 1 1 1 1 1 543750000 496950000 46805000 9145 1456 8524 49012;49013;49014;49015;49016 59341;59342;59343;59344;59345;59346;59347;59348 59347 8 ILMTYSVQDHMETR 2 Oxidation (M) 1754.7968 0.79675545 3135 Q9UIG0;Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B yes no 0 0 2 0 By MS/MS By matching 5 0 2 1 1 38.716 38.786 3 0.020542 10246 20211116_3433_TMUAki_TMT10x_P_F5 47.668 25.47 516540 879580 8527.5 1091400 1317200 1410600 817870 854260 854560 630950 863970 481010 821530 61986 1103200 1251000 1404800 856850 889950 868100 625420 833150 1 1 1 1 1 1 1 1 1 1 1 516540 879580 8527.5 1091400 1317200 1410600 817870 854260 854560 630950 863970 481010 821530 61986 1103200 1251000 1404800 856850 889950 868100 625420 833150 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 68066000 54192000 13874000 9146 3135 8525 49017;49018 59349 59349 3154;3155 1 ILMVGLDAAGK Unmodified 1086.6107 0.61071622 1301;1453;715 P84085;P61204;P84077;P61204-2;P18085 ARF5;ARF3;ARF1;ARF4 ADP-ribosylation factor 5;ADP-ribosylation factor 3;ADP-ribosylation factor 1;ADP-ribosylation factor 4 no no 0 0 0 0 By MS/MS By MS/MS 5 3.29 2 1 2 3 2 71.479 71.575 2 1.9561E-11 22805 20211116_3428_TMUAki_TMT10x_P_F1 137.05 97.721 53578000 84431000 872170 99211000 66378000 67490000 62416000 49165000 38031000 48486000 68278000 49893000 78838000 5434100 99693000 63599000 70299000 62764000 50892000 40831000 47382000 64929000 5 5 5 5 5 5 5 5 5 5 5 21340000 31913000 217030 38249000 28761000 38161000 26515000 20451000 14955000 18331000 27036000 19871000 29802000 2075400 38571000 27534000 38483000 26654000 21623000 16149000 17991000 25706000 2 2 2 2 2 2 2 2 2 2 2 32238000 52518000 655150 60962000 37616000 29329000 35901000 28714000 23076000 30154000 41243000 30022000 49036000 3358700 61122000 36065000 31816000 36109000 29269000 24682000 29391000 39223000 3 3 3 3 3 3 3 3 3 3 3 2415500000 1604800000 810730000 9147 1453;1301;715 8526 49019;49020;49021;49022;49023 59350;59351;59352;59353;59354;59355;59356 59350 7 ILMVGLDAAGK Oxidation (M) 1102.6056 0.60563084 1301;1453;715 P84085;P61204;P84077;P61204-2;P18085 ARF5;ARF3;ARF1;ARF4 ADP-ribosylation factor 5;ADP-ribosylation factor 3;ADP-ribosylation factor 1;ADP-ribosylation factor 4 no no 0 0 1 0 By MS/MS By MS/MS 7 0.577 1 4 1 3 3 62.821 63.396 2 0.00043589 21402 20211116_3446_TMUAki_TMT10x_S_F7 94.85 63.621 17233000 30239000 310930 32742000 23125000 28083000 21227000 29106000 29572000 28638000 27768000 16048000 28226000 1801000 33156000 22144000 28920000 21889000 29527000 29655000 27989000 26843000 3 3 3 3 3 3 3 3 3 3 3 5308500 8672000 86455 10070000 9370200 13364000 7491400 7983500 8637400 8203700 8270800 4943400 8097100 577570 10223000 8942600 13290000 7732600 8395200 8723900 8003100 7989900 1 1 1 1 1 1 1 1 1 1 1 11924000 21567000 224470 22672000 13754000 14720000 13736000 21122000 20934000 20434000 19498000 11104000 20129000 1223400 22932000 13201000 15630000 14157000 21132000 20931000 19986000 18853000 2 2 2 2 2 2 2 2 2 2 2 2732100000 1606500000 1125600000 9148 1453;1301;715 8526 49024;49025;49026;49027;49028;49029 59357;59358;59359;59360;59361 59360 818 5 ILNDVQDR Unmodified 971.50361 0.50360861 1665;63 O00148;Q13838;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B no no 0 0 0 0 By MS/MS 3 0 1 1 38.319 38.361 2 0.022306 11297 20211116_3430_TMUAki_TMT10x_P_F3 69.954 34.658 112820 212990 0 226940 273400 242510 138570 132570 149520 128440 187240 105030 198800 9284.8 230770 258610 243620 147940 140210 152970 125610 179460 1 1 0 1 1 1 1 1 1 1 1 112820 212990 0 226940 273400 242510 138570 132570 149520 128440 187240 105030 198800 9284.8 230770 258610 243620 147940 140210 152970 125610 179460 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3352900 3352900 0 9149 63;1665 8527 49030 59362 59362 1 ILNHVLQHAEPGNAQSVLEAIDTYCEQK Unmodified 3176.5561 0.55606148 761 P21964;P21964-2 COMT Catechol O-methyltransferase yes no 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 76.627 76.61 4 8.3332E-06 24380 20211116_3444_TMUAki_TMT10x_S_F5 66.012 58.479 2558100 4875100 49652 4328600 4238300 3339800 4041900 3519100 2715800 3536500 3860000 2382200 4546900 281890 4439700 4062000 3467400 4069100 3569400 2861500 3453200 3688100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2558100 4875100 49652 4328600 4238300 3339800 4041900 3519100 2715800 3536500 3860000 2382200 4546900 281890 4439700 4062000 3467400 4069100 3569400 2861500 3453200 3688100 1 1 1 1 1 1 1 1 1 1 1 859180000 0 859180000 9150 761 8528 49031;49032 59363 59363 1 ILNPEEIEK Unmodified 1083.5812 0.58119023 137 O14818;O14818-2 PSMA7 Proteasome subunit alpha type-7 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 56.761 56.81 2 0.00025206 18875 20211116_3430_TMUAki_TMT10x_P_F3 96.342 34.577 14160000 20024000 173600 24335000 21895000 20577000 14854000 10708000 12971000 11316000 16174000 13185000 18701000 1376400 24465000 20823000 20972000 15377000 11403000 13392000 11026000 15503000 3 3 2 3 3 3 3 3 3 3 3 10435000 14875000 77373 17834000 19011000 18206000 11875000 8082600 9907600 8601900 11871000 9716200 13891000 989720 17991000 18049000 18297000 12357000 8744200 10235000 8379700 11391000 2 2 1 2 2 2 2 2 2 2 2 3724800 5149200 96229 6500700 2884500 2370400 2979000 2625200 3063400 2713800 4303000 3468900 4809800 386730 6474600 2774000 2675300 3019400 2658900 3156800 2646800 4112500 1 1 1 1 1 1 1 1 1 1 1 562410000 278910000 283500000 9151 137 8529 49033;49034;49035;49036 59364;59365;59366;59367;59368 59364 5 ILPDILK Unmodified 810.52149 0.52149051 598 P35520;P0DN79;P35520-2 CBS Cystathionine beta-synthase yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 70.341 70.786 2 0.0050027 23904 20211116_3435_TMUAki_TMT10x_P_F7 110.63 38.4 5614500 8775700 0 8893500 9328300 13057000 7148000 7433200 7084100 6276600 7657400 5227500 8189100 500610 9126800 8888500 12918000 7362500 7806800 7230000 6177700 7369000 1 1 0 1 1 1 1 1 1 1 1 5614500 8775700 0 8893500 9328300 13057000 7148000 7433200 7084100 6276600 7657400 5227500 8189100 500610 9126800 8888500 12918000 7362500 7806800 7230000 6177700 7369000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 390210000 390210000 0 9152 598 8530 49037;49038;49039 59369;59370;59371 59369 3 ILPDILKK Unmodified 938.61645 0.61645353 598 P35520;P0DN79;P35520-2 CBS Cystathionine beta-synthase yes no 0 0 0 1 By MS/MS 2 0 1 1 63.109 62.872 3 0.0020869 19573 20211116_3440_TMUAki_TMT10x_S_F2 87.308 56.234 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9153 598 8531 49040 59372 59372 1 ILPEAHQR Unmodified 962.52976 0.52976379 820 P26640 VARS Valine--tRNA ligase yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 30.136 30.175 3 0.0010851 6406 20211116_3431_TMUAki_TMT10x_P_F4 103.74 72.45 493400 722980 1628.3 596370 574870 738510 444670 362090 402500 381590 483880 459420 674140 43565 619470 548030 735120 456550 387730 414210 371880 464270 1 1 1 1 1 1 1 1 1 1 1 493400 722980 1628.3 596370 574870 738510 444670 362090 402500 381590 483880 459420 674140 43565 619470 548030 735120 456550 387730 414210 371880 464270 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 67195000 67195000 0 9154 820 8532 49041;49042 59373;59374 59373 2 ILPEEITNLR Unmodified 1196.6765 0.6764876 2839 Q9H9A6 LRRC40 Leucine-rich repeat-containing protein 40 yes yes 0 0 0 0 By MS/MS 4 0 1 1 64.069 64.173 2 0.00018266 20186 20211116_3431_TMUAki_TMT10x_P_F4 89.029 43.008 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9155 2839 8533 49043 59375 59375 1 ILPFQYVLCAATSPAVK Unmodified 1877.0121 0.012091596 1567 Q12800;Q12800-2;Q12800-3;Q12800-4 TFCP2 Alpha-globin transcription factor CP2 yes no 0 0 0 0 By MS/MS By MS/MS 6.17 0.687 1 3 2 3 3 80.646 80.66 2;3 1.5272E-39 26382 20211116_3445_TMUAki_TMT10x_S_F6 198.49 165.26 13972000 24408000 70343 23506000 20300000 14916000 17712000 11439000 10872000 12098000 14699000 13008000 22772000 1144900 23916000 19393000 15647000 17889000 11825000 11495000 11789000 14061000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13972000 24408000 70343 23506000 20300000 14916000 17712000 11439000 10872000 12098000 14699000 13008000 22772000 1144900 23916000 19393000 15647000 17889000 11825000 11495000 11789000 14061000 3 3 2 3 3 3 3 3 3 3 3 4583200000 472530000 4110700000 9156 1567 8534 49044;49045;49046;49047;49048;49049 59376;59377;59378;59379;59380;59381 59380 6 ILPGPHFEER Unmodified 1193.6193 0.61930707 2412 Q96AX1 VPS33A Vacuolar protein sorting-associated protein 33A yes yes 0 0 0 0 By MS/MS By MS/MS 4.75 0.829 2 1 1 1 3 42.176 42.322 3 1.0984E-09 11361 20211116_3431_TMUAki_TMT10x_P_F4 157.75 110.04 1206200 1845300 8217.9 1960600 1116500 960850 1114400 1270400 1266300 1170600 1599900 1123200 1722300 106400 1977000 1071000 1047500 1135200 1273000 1293400 1147400 1533000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1206200 1845300 8217.9 1960600 1116500 960850 1114400 1270400 1266300 1170600 1599900 1123200 1722300 106400 1977000 1071000 1047500 1135200 1273000 1293400 1147400 1533000 1 1 1 1 1 1 1 1 1 1 1 178050000 0 178050000 9157 2412 8535 49050;49051;49052;49053 59382;59383;59384 59382 3 ILPKPTR Unmodified 823.52797 0.52797287 1332 P62081 RPS7 40S ribosomal protein S7 yes yes 0 0 0 1 By MS/MS By MS/MS 2.6 1.02 1 1 2 1 3 2 35.04 34.893 3 0.011365 8327 20211116_3431_TMUAki_TMT10x_P_F4 86.472 43.389 5116600 8283200 36754 7231000 6704500 11455000 4354800 5544000 5080200 5173400 5979600 4764400 7725200 480700 7514300 6371700 11276000 4562600 5923900 5168400 5067900 5740400 2 2 2 2 2 2 2 2 2 2 2 5116600 8283200 36754 7231000 6704500 11455000 4354800 5544000 5080200 5173400 5979600 4764400 7725200 480700 7514300 6371700 11276000 4562600 5923900 5168400 5067900 5740400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 744130000 489370000 254760000 9158 1332 8536 49054;49055;49056;49057;49058 59385;59386;59387;59388 59387 4 ILPLTGIPVLFLPGNAGSYK Unmodified 2069.1925 0.1924988 2046 Q75T13;Q75T13-3 PGAP1 GPI inositol-deacylase yes no 0 0 0 0 By MS/MS 7 0 1 1 82.327 82.34 3 3.9678E-13 28774 20211116_3435_TMUAki_TMT10x_P_F7 132.79 120.51 2366600 3326200 17919 3666400 2200200 3633000 2476100 1710600 1682200 1918500 2457100 2203600 3105000 196230 3715800 2116700 3660000 2472600 1842500 1773600 1865100 2346300 2 2 1 2 2 2 2 2 2 2 2 2366600 3326200 17919 3666400 2200200 3633000 2476100 1710600 1682200 1918500 2457100 2203600 3105000 196230 3715800 2116700 3660000 2472600 1842500 1773600 1865100 2346300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 212860000 212860000 0 9159 2046 8537 49059 59389;59390 59389 2 ILPQDVILK Unmodified 1037.6485 0.64848194 2476 Q96GQ7 DDX27 Probable ATP-dependent RNA helicase DDX27 yes yes 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 67.766 68.108 2 0.00037054 23245 20211116_3446_TMUAki_TMT10x_S_F7 126.07 76.028 7757500 14072000 83400 12649000 10396000 10469000 8707700 13081000 12258000 13085000 13026000 7223700 13126000 757840 12972000 9931200 10858000 9030800 13168000 12342000 12779000 12542000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7757500 14072000 83400 12649000 10396000 10469000 8707700 13081000 12258000 13085000 13026000 7223700 13126000 757840 12972000 9931200 10858000 9030800 13168000 12342000 12779000 12542000 1 1 1 1 1 1 1 1 1 1 1 532290000 0 532290000 9160 2476 8538 49060;49061 59391;59392 59392 2 ILPQYIFNSR Unmodified 1249.6819 0.68190733 295 O60841 EIF5B Eukaryotic translation initiation factor 5B yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 69.402 69.199 2 0.0011598 22710 20211116_3442_TMUAki_TMT10x_S_F4 93.938 42.482 14452000 23284000 158940 23494000 17374000 22982000 16329000 12776000 12836000 12868000 17387000 13454000 21727000 1056800 23945000 16621000 23215000 16510000 13507000 13372000 12564000 16632000 2 2 1 2 2 2 2 2 2 2 2 9539000 14888000 0 14726000 11364000 18164000 11157000 7634500 8013200 8086900 10736000 8879100 13892000 486050 15086000 10870000 18056000 11231000 8307100 8386200 7879400 10273000 1 1 0 1 1 1 1 1 1 1 1 4912600 8395700 158940 8767200 6010000 4818000 5171700 5141200 4822500 4780900 6650400 4575300 7835400 570780 8858700 5751200 5159100 5278900 5200100 4986200 4684200 6358900 1 1 1 1 1 1 1 1 1 1 1 1395000000 888090000 506910000 9161 295 8539 49062;49063;49064;49065 59393;59394 59394 2 ILPTLEAVAALGNK Unmodified 1408.829 0.8289655 1575 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 2.85 0.988 1 6 18 1 14 12 62.134 62.063 2;3 6.5113E-14 27884 20211116_3435_TMUAki_TMT10x_P_F7 139.32 112.43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9162 1575 8540 49066;49067;49068;49069;49070;49071;49072;49073;49074;49075;49076;49077;49078;49079;49080;49081;49082;49083;49084;49085;49086;49087;49088;49089;49090;49091 59395;59396;59397;59398;59399;59400;59401;59402;59403;59404;59405;59406;59407;59408;59409;59410;59411;59412;59413;59414;59415;59416;59417;59418;59419;59420 59408 26 ILPVFDEPPNPTNVEESLK Unmodified 2137.0943 0.094300901 3022 Q9NYL9 TMOD3 Tropomodulin-3 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 78.815 78.804 3 0.0010525 26608 20211116_3442_TMUAki_TMT10x_S_F4 65.423 50.728 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9163 3022 8541 49092;49093 59421;59422 59422 2 ILPVGGIK Unmodified 795.52182 0.52182486 955 P36776;P36776-3;P36776-2 LONP1 Lon protease homolog, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 58.155 57.915 2 0.0024301 17538 20211116_3440_TMUAki_TMT10x_S_F2 103.29 10.593 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9164 955 8542 49094;49095 59423;59424 59424 2 ILPVLGSQTGKI Unmodified 1224.7442 0.74417324 3193 Q9UNI6 DUSP12 Dual specificity protein phosphatase 12 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0 3 2 1 70.575 70.271 2;3 1.2371E-14 25358 20211116_3441_TMUAki_TMT10x_S_F3 148.56 88.121 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9165 3193 8543 49096;49097;49098 59425;59426;59427 59427 3 ILQAGFK Unmodified 775.45922 0.4592246 1824 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 0 By MS/MS 2 0 1 1 53.474 53.224 2 0.0071923 16904 20211116_3429_TMUAki_TMT10x_P_F2 118.01 75.547 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9166 1824 8544 49099 59428 59428 1 ILQAGFKR Unmodified 931.56034 0.56033563 1824 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 1 By MS/MS By MS/MS 3.75 0.829 2 1 1 1 3 41.199 41.068 3 0.00066629 9937 20211116_3444_TMUAki_TMT10x_S_F5 107.9 71.194 1443700 2457000 3810.1 2131500 2480900 2539600 1696800 2414200 2433300 2013300 2221000 1344200 2291400 137490 2203500 2359300 2559200 1784900 2448900 2435700 1982800 2149100 3 3 2 3 3 3 3 3 3 3 3 726330 1209200 3810.1 1051400 1409500 1819300 1028200 1104100 1132800 949720 1089200 676310 1127700 73337 1095300 1342200 1789900 1066200 1154000 1146300 933910 1052100 2 2 2 2 2 2 2 2 2 2 2 717350 1247800 0 1080000 1071400 720310 668530 1310100 1300400 1063500 1131800 667920 1163700 64155 1108300 1017100 769250 718750 1294900 1289300 1048900 1097000 1 1 0 1 1 1 1 1 1 1 1 121760000 30891000 90868000 9167 1824 8545 49100;49101;49102;49103 59429;59430;59431;59432;59433 59433 5 ILQAVNFPFLVK Unmodified 1387.8228 0.82275791 706 P17612;P17612-2 PRKACA cAMP-dependent protein kinase catalytic subunit alpha yes no 0 0 0 0 By MS/MS By MS/MS 6 0 3 1 2 80.485 80.481 2;3 1.9104E-06 25913 20211116_3434_TMUAki_TMT10x_P_F6 105.46 79.415 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9168 706 8546 49104;49105;49106 59434;59435;59436 59434 3 ILQAVNFPFLVR Unmodified 1415.8289 0.82890592 773 P22694;P22694-2;P22694-8;P22694-4;P22694-3;P22694-5;P22694-7;P22694-6;P22694-9 PRKACB cAMP-dependent protein kinase catalytic subunit beta yes no 0 0 0 0 By MS/MS 7 0 1 1 80.116 80.156 2 6.199E-05 28306 20211116_3446_TMUAki_TMT10x_S_F7 93.178 50.357 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9169 773 8547 49107 59437 59437 1 ILQDGGLQVVEK Unmodified 1297.7242 0.72416608 201 O43175 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 0 By MS/MS By MS/MS 4.93 0.961 1 4 4 5 7 7 61.895 61.913 2;3 2.4899E-30 19240 20211116_3431_TMUAki_TMT10x_P_F4 261.83 166.33 47667000 74048000 348280 85693000 86345000 89938000 58723000 61561000 71856000 59367000 70238000 44382000 69139000 4429600 86662000 82093000 90723000 61417000 63957000 72469000 58072000 67807000 11 11 6 11 11 11 11 11 11 11 11 26923000 41471000 325450 47716000 65469000 72555000 40224000 34911000 39994000 34740000 39527000 25070000 38721000 3036500 48609000 62157000 71536000 42114000 37389000 40681000 33936000 38145000 7 7 5 7 7 7 7 7 7 7 7 20744000 32577000 22834 37977000 20876000 17383000 18499000 26650000 31862000 24627000 30711000 19312000 30418000 1393100 38054000 19936000 19187000 19302000 26568000 31789000 24135000 29662000 4 4 1 4 4 4 4 4 4 4 4 9276300000 5415300000 3861100000 9170 201 8548 49108;49109;49110;49111;49112;49113;49114;49115;49116;49117;49118;49119;49120;49121 59438;59439;59440;59441;59442;59443;59444;59445;59446;59447;59448;59449;59450;59451 59439 14 ILQDIASGSHPFSQVLK Unmodified 1838.989 0.98904797 842 P28331;P28331-3;P28331-4;P28331-5;P28331-2 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 0 0 0 0 By MS/MS By matching 2 0 2 1 1 72.552 72.384 3 0.0040742 24718 20211116_3429_TMUAki_TMT10x_P_F2 57.936 42.396 5681200 9246000 20483 8361100 4878700 10025000 5394600 4343900 3736600 4584600 5530400 5289900 8624200 478860 8617100 4692100 9982100 5393700 4710400 3937500 4467600 5279500 1 1 1 1 1 1 1 1 1 1 1 5681200 9246000 20483 8361100 4878700 10025000 5394600 4343900 3736600 4584600 5530400 5289900 8624200 478860 8617100 4692100 9982100 5393700 4710400 3937500 4467600 5279500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 983920000 474380000 509530000 9171 842 8549 49122;49123 59452 59452 1 ILQEAQNLMALTNVDTPLK Unmodified 2111.1296 0.12964055 2574 Q99459 CDC5L Cell division cycle 5-like protein yes yes 0 0 0 0 By MS/MS 7 0 1 1 81.041 81.075 3 0.001033 28684 20211116_3446_TMUAki_TMT10x_S_F7 65.47 53.856 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9172 2574 8550 49124 59453 59453 1 ILQEHEQIK Unmodified 1136.619 0.61897272 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 By MS/MS 5 0 1 1 36.627 36.789 3 0.036007 8276 20211116_3444_TMUAki_TMT10x_S_F5 46.033 28.668 1276500 1947300 14813 2158000 1268300 1073600 1124300 1348100 1514100 1420000 1596400 1188700 1817800 119520 2170400 1213400 1166700 1160000 1358900 1526200 1383900 1537400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1276500 1947300 14813 2158000 1268300 1073600 1124300 1348100 1514100 1420000 1596400 1188700 1817800 119520 2170400 1213400 1166700 1160000 1358900 1526200 1383900 1537400 1 1 1 1 1 1 1 1 1 1 1 26344000 0 26344000 9173 1684 8551 49125 59454 59454 1 ILQGGVGIPHIR Unmodified 1258.751 0.75098995 1082 P48729;P48729-2;P48729-3 CSNK1A1 Casein kinase I isoform alpha yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 51.662 51.443 3 1.5915E-09 14878 20211116_3440_TMUAki_TMT10x_S_F2 155 129.06 2125300 3565100 41553 3747600 2542500 3015700 2287300 3027800 2765800 2550700 3075100 1979200 3327300 220770 3799400 2434000 3117600 2348300 3063600 2803800 2510800 2956900 3 3 3 3 3 3 3 3 3 3 3 566450 1056100 27456 1127700 1049800 1520600 877900 972440 847860 777980 977120 527620 985690 79320 1151200 1003900 1512500 898550 1010600 868450 767830 938590 1 1 1 1 1 1 1 1 1 1 1 1558900 2509100 14097 2620000 1492700 1495100 1409400 2055400 1917900 1772700 2098000 1451600 2341600 141450 2648200 1430000 1605100 1449700 2053000 1935300 1742900 2018300 2 2 2 2 2 2 2 2 2 2 2 584530000 210150000 374380000 9174 1082 8552 49126;49127;49128 59455;59456;59457 59456 3 ILQHSHGIEEERQDLTTALGLVK Unmodified 2586.3766 0.37656419 2382 Q92974;Q92974-2;Q92974-3 ARHGEF2 Rho guanine nucleotide exchange factor 2 yes no 0 0 0 1 By matching By MS/MS 6 0.816 1 1 1 2 1 61.65 61.877 5 0.023108 20680 20211116_3446_TMUAki_TMT10x_S_F7 42.322 19.887 2869400 4951300 16662 4340700 3694500 3082500 3150900 4286400 3699700 3913400 3966000 2671800 4617800 264980 4452600 3529800 3244900 3241500 4286200 3749300 3837400 3817600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2869400 4951300 16662 4340700 3694500 3082500 3150900 4286400 3699700 3913400 3966000 2671800 4617800 264980 4452600 3529800 3244900 3241500 4286200 3749300 3837400 3817600 1 1 1 1 1 1 1 1 1 1 1 1868600000 1056100000 812460000 9175 2382 8553 49129;49130;49131 59458 59458 1 ILQLCMGNHELYMR 2 Oxidation (M) 1808.8372 0.83718047 682 P15311 EZR Ezrin yes yes 0 0 2 0 By MS/MS By MS/MS 7.4 0.8 1 1 3 2 3 48.577 48.801 3 0.027485 13612 20211116_3436_TMUAki_TMT10x_P_F8 43.408 10.878 3667900 6975900 27584 7137900 6133100 7875600 4448200 12100000 7490900 12523000 5788500 3415400 6509900 364330 7281400 5840000 8072600 4694300 12101000 7427200 12213000 5636700 2 2 2 2 2 2 2 2 2 2 2 1804000 3535700 20210 3700900 4123100 5836000 2711100 7178500 3269500 7716300 2774700 1679800 3299800 200880 3795800 3919200 5843800 2841100 7247000 3284100 7514000 2692000 1 1 1 1 1 1 1 1 1 1 1 1863900 3440200 7373.6 3436900 2010000 2039700 1737100 4921000 4221400 4806400 3013800 1735500 3210000 163450 3485600 1920900 2228800 1853200 4854500 4143000 4698900 2944700 1 1 1 1 1 1 1 1 1 1 1 1834200000 1020300000 813970000 9176 682 8554 49132;49133;49134;49135;49136 59459;59460;59461;59462 59459 765;766 4 ILQLCMGNHELYMR Oxidation (M) 1792.8423 0.84226585 682 P15311 EZR Ezrin yes yes 0 0 1 0 By MS/MS 8 0 1 1 54.286 54.217 3 0.00038041 15331 20211116_3447_TMUAki_TMT10x_S_F8 68.034 18.105 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9177 682 8554 49137 59463 59463 765;766 1 ILQNEPLPER Unmodified 1207.6561 0.65608651 445 O95793;O95793-2;O95793-3 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 45.89 45.897 2 0.00019533 15502 20211116_3441_TMUAki_TMT10x_S_F3 87.806 69.024 1163500 1811700 0 2054000 2326800 2449200 1457300 1276400 1430900 1207700 1483700 1083200 1691400 99678 2084200 2208400 2444300 1522900 1354900 1458700 1182400 1429700 1 1 0 1 1 1 1 1 1 1 1 1163500 1811700 0 2054000 2326800 2449200 1457300 1276400 1430900 1207700 1483700 1083200 1691400 99678 2084200 2208400 2444300 1522900 1354900 1458700 1182400 1429700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 67612000 67612000 0 9178 445 8555 49138;49139 59464;59465 59465 2 ILQNEPLPERLEVNGR Unmodified 1876.0167 0.016659702 445 O95793;O95793-2;O95793-3 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes no 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 52.55 52.629 3 0.0078027 15938 20211116_3442_TMUAki_TMT10x_S_F4 56.817 39.188 2168200 3798200 15341 3766400 2249100 2145600 1748700 2923300 2867800 2813200 2942300 2018900 3544000 195190 3820400 2144900 2303200 1834600 2929700 2871100 2752100 2836000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2168200 3798200 15341 3766400 2249100 2145600 1748700 2923300 2867800 2813200 2942300 2018900 3544000 195190 3820400 2144900 2303200 1834600 2929700 2871100 2752100 2836000 1 1 1 1 1 1 1 1 1 1 1 240960000 0 240960000 9179 445 8556 49140;49141 59466;59467 59467 2 ILQVSFK Unmodified 833.50109 0.50108942 1825 Q15717;Q15717-2 ELAVL1 ELAV-like protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 62.571 62.236 2 0.0053274 22139 20211116_3441_TMUAki_TMT10x_S_F3 109.01 36.874 21012000 33178000 171470 35438000 33803000 38111000 24918000 26476000 26295000 23155000 27031000 19566000 30967000 2081000 36032000 32199000 38398000 25783000 27406000 26717000 22751000 26053000 3 3 3 3 3 3 3 3 3 3 3 15433000 23061000 115270 24788000 27932000 32852000 19610000 19132000 19224000 17067000 19382000 14370000 21525000 1562000 25287000 26580000 32662000 20314000 20082000 19580000 16754000 18692000 2 2 2 2 2 2 2 2 2 2 2 5579400 10117000 56192 10649000 5871300 5259000 5308200 7344000 7071100 6087900 7649100 5195400 9441900 519030 10746000 5618900 5736900 5468300 7324000 7137000 5997600 7360900 1 1 1 1 1 1 1 1 1 1 1 885220000 577310000 307910000 9180 1825 8557 49142;49143;49144;49145 59468;59469;59470;59471 59471 4 ILREEGPK Unmodified 940.53418 0.53418046 3141 Q9UJS0;Q9UJS0-2 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 32.245 32.32 3 0.0010616 7752 20211116_3431_TMUAki_TMT10x_P_F4 114.89 73.592 1956200 3215000 28389 3115600 2667300 3287300 2264000 1450600 1542200 1614200 2414300 1821600 2999600 198600 3188000 2549100 3297000 2295200 1572400 1631400 1569700 2302000 2 2 2 2 2 2 2 2 2 2 2 1838600 3009200 15856 2908700 2542700 3167300 2120400 1354200 1450300 1510600 2251100 1712000 2807500 177070 2978300 2428400 3169900 2152200 1473100 1533200 1468900 2146800 1 1 1 1 1 1 1 1 1 1 1 117620 205840 12532 206900 124620 120010 143530 96310 91883 103560 163170 109610 192080 21529 209700 120720 127090 143000 99334 98265 100840 155200 1 1 1 1 1 1 1 1 1 1 1 79581000 74138000 5442700 9181 3141 8558 49146;49147;49148;49149 59472;59473;59474 59472 3 ILRELMNVAGLYYPK Oxidation (M) 1794.9702 0.97022678 3204 Q9UP65;Q9UP65-3 PLA2G4C Cytosolic phospholipase A2 gamma yes no 0 0 1 1 By MS/MS 8 0 1 1 75.164 75.178 3 0.049468 24415 20211116_3436_TMUAki_TMT10x_P_F8 40.941 14.899 2566100 4709400 100020 3081700 4448300 9996100 5917300 9300400 8209000 7365800 5822900 2390100 4388300 332330 3362200 4308200 9741300 5996300 9433200 8166300 7273500 5691000 1 1 1 1 1 1 1 1 1 1 1 2566100 4709400 100020 3081700 4448300 9996100 5917300 9300400 8209000 7365800 5822900 2390100 4388300 332330 3362200 4308200 9741300 5996300 9433200 8166300 7273500 5691000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482600000 482600000 0 9182 3204 8559 49150 59475 59475 3193 1 ILRGPDGLSR Unmodified 1082.6196 0.61964142 2371 Q92879;Q92879-4;Q92879-5;Q92879-2;Q92879-3;Q92879-6;O95319;O95319-5;O95319-2;O95319-4;O95319-3 CELF1;CELF2 CUGBP Elav-like family member 1;CUGBP Elav-like family member 2 yes no 0 0 0 1 By MS/MS By MS/MS 6.25 3.03 2 6 4 4 30.679 30.833 3 2.4456E-06 10599 20211116_3439_TMUAki_TMT10x_S_F1 141.89 120.49 4158700 6327500 70507 6515300 5984900 6384600 4519900 3690000 3710500 3963500 5060300 3872400 5905000 350130 6631500 5703900 6451700 4636200 3895900 3858100 3859700 4839700 9 9 5 9 9 9 9 9 9 9 9 2950900 4368600 41949 4452900 4713200 5280000 3118700 2474900 2588800 2731500 3474000 2747600 4076700 274190 4549100 4479500 5264900 3230400 2665500 2688200 2657200 3323900 6 6 4 6 6 6 6 6 6 6 6 1207800 1958900 28558 2062400 1271800 1104600 1401100 1215200 1121700 1231900 1586300 1124800 1828300 75938 2082400 1224400 1186800 1405800 1230400 1169900 1202500 1515800 3 3 1 3 3 3 3 3 3 3 3 282030000 167720000 114310000 9183 2371 8560 49151;49152;49153;49154;49155;49156;49157;49158 59476;59477;59478;59479;59480;59481;59482;59483;59484 59482 9 ILRPGGCLFLKEPVETAVDNNSK Unmodified 2556.337 0.33700756 1972 Q6FI81;Q6FI81-3 CIAPIN1 Anamorsin yes no 0 0 0 2 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 61.824 61.803 4 3.2202E-57 18823 20211116_3436_TMUAki_TMT10x_P_F8 235.35 220.09 37923000 66611000 187760 63758000 45103000 60641000 47125000 35415000 31527000 34941000 44070000 35307000 62144000 2887700 65199000 43275000 61403000 47212000 37266000 33201000 34145000 42125000 7 7 3 7 7 7 7 7 7 7 7 24122000 41641000 110410 40796000 29208000 44814000 31062000 22161000 20354000 22485000 28489000 22457000 38852000 1726600 41739000 28031000 44896000 31079000 23684000 21464000 21946000 27230000 4 4 1 4 4 4 4 4 4 4 4 13801000 24970000 77351 22962000 15895000 15828000 16063000 13254000 11173000 12456000 15581000 12850000 23292000 1161100 23460000 15244000 16506000 16133000 13582000 11737000 12198000 14894000 3 3 2 3 3 3 3 3 3 3 3 3865400000 2067100000 1798300000 9184 1972 8561 49159;49160;49161;49162 59485;59486;59487;59488;59489;59490;59491 59487 7 ILRPWQSSETR Unmodified 1371.7259 0.72589741 1819;1820 Q15637;Q15637-6;Q15637-4;Q15637-2;Q15637-3;Q15637-7;Q15637-5 SF1 Splicing factor 1 no no 0 0 0 1 By MS/MS By MS/MS 3.22 2.66 3 2 2 2 5 4 39.725 39.727 3 7.127E-15 11526 20211116_3429_TMUAki_TMT10x_P_F2 192.6 161.86 9308600 14318000 325550 17596000 19393000 14842000 11226000 10454000 9403600 8887200 13532000 8669500 13372000 1194700 17678000 18408000 15191000 11758000 10803000 9792800 8744200 12926000 11 11 8 11 11 11 11 11 11 11 11 5367600 8036900 245880 10093000 16002000 12059000 8162900 6184100 5526500 5157300 7798200 4999500 7507000 807720 10181000 15161000 12032000 8608200 6553400 5818200 5079200 7452300 6 6 4 6 6 6 6 6 6 6 6 3941100 6280600 79670 7503100 3390400 2782100 3063600 4269800 3877100 3729900 5734000 3670100 5865100 387000 7497500 3247100 3158900 3149800 4250000 3974500 3665100 5473900 5 5 4 5 5 5 5 5 5 5 5 897010000 600890000 296110000 9185 1819;1820 8562 49163;49164;49165;49166;49167;49168;49169;49170;49171 59492;59493;59494;59495;59496;59497;59498;59499;59500;59501;59502;59503;59504 59494 13 ILSDDCATLGTLGVIPESVILLK Unmodified 2426.3342 0.3342136 2109 Q86UV5;Q86UV5-2;Q86UV5-8;Q86UV5-6;Q86UV5-5 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes no 0 0 0 0 By MS/MS 6 0 1 1 82.172 82.164 3 5.5714E-06 26610 20211116_3434_TMUAki_TMT10x_P_F6 81.144 71.394 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9186 2109 8563 49172 59505 59505 1 ILSDDVPIRDYR Unmodified 1460.7623 0.7623425 1226 P54725;P54725-3;P54725-2 RAD23A UV excision repair protein RAD23 homolog A yes no 0 0 0 1 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 50.085 50.245 3 1.6881E-07 14459 20211116_3431_TMUAki_TMT10x_P_F4 132.79 97.138 8855800 16016000 148550 16514000 10922000 12212000 8594200 13864000 14914000 12621000 13609000 8246700 14947000 901590 16747000 10423000 12743000 9034800 13976000 14850000 12377000 13168000 4 4 4 4 4 4 4 4 4 4 4 2257400 4128300 60667 4161600 5046200 6027000 3429200 3334100 3866100 3181900 3367100 2102300 3852300 282750 4271100 4801500 5964300 3576500 3521200 3896300 3113900 3263600 1 1 1 1 1 1 1 1 1 1 1 6598300 11888000 87882 12352000 5875900 6185200 5164900 10530000 11048000 9439000 10242000 6144400 11094000 618830 12476000 5621500 6779100 5458300 10454000 10954000 9263600 9904600 3 3 3 3 3 3 3 3 3 3 3 1208800000 570270000 638480000 9187 1226 8564 49173;49174;49175;49176;49177;49178 59506;59507;59508;59509;59510;59511;59512 59507 7 ILSGPFVQK Unmodified 987.57532 0.57531699 766 P22102 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 61.356 60.929 2 0.0010917 20047 20211116_3429_TMUAki_TMT10x_P_F2 85.38 7.231 22126000 37873000 863650 39207000 22396000 24152000 19942000 35237000 31909000 31597000 34431000 20608000 35345000 2610400 39678000 21463000 25782000 20727000 35158000 32027000 31009000 33137000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22126000 37873000 863650 39207000 22396000 24152000 19942000 35237000 31909000 31597000 34431000 20608000 35345000 2610400 39678000 21463000 25782000 20727000 35158000 32027000 31009000 33137000 3 3 2 3 3 3 3 3 3 3 3 176530000 0 176530000 9188 766 8565 49179;49180;49181;49182 59513;59514;59515;59516;59517;59518 59513 6 ILSGVVTK Unmodified 815.51165 0.5116541 1348 P62280 RPS11 40S ribosomal protein S11 yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 53.575 53.458 2 0.00046503 17468 20211116_3439_TMUAki_TMT10x_S_F1 139.97 32.377 40259000 64479000 504600 65675000 52325000 55957000 40769000 39302000 39170000 36360000 47541000 37488000 60170000 3963300 66770000 49911000 57230000 41908000 40712000 40216000 35632000 45602000 7 7 6 7 7 7 7 7 7 7 7 21797000 34103000 263660 35916000 34937000 41461000 22311000 20057000 20165000 18844000 24732000 20297000 31828000 2236900 36595000 33198000 41415000 23225000 21436000 20770000 18454000 23717000 3 3 3 3 3 3 3 3 3 3 3 18462000 30376000 240940 29760000 17388000 14496000 18457000 19245000 19005000 17516000 22809000 17191000 28342000 1726500 30175000 16713000 15815000 18683000 19276000 19445000 17178000 21886000 4 4 3 4 4 4 4 4 4 4 4 3371700000 2065900000 1305700000 9189 1348 8566 49183;49184;49185;49186;49187;49188 59519;59520;59521;59522;59523;59524;59525 59522 7 ILSHGGFR Unmodified 885.48209 0.48208531 1575 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 1.2 0.4 4 1 3 2 33.525 33.485 2;3 0.00048375 9313 20211116_3439_TMUAki_TMT10x_S_F1 180 85.598 1246500 2032600 5577.8 2002900 1496600 1550600 1386900 1340400 1396500 1286100 1675600 1160500 1896500 96728 2038600 1431600 1602800 1412900 1371800 1430100 1258300 1607800 4 4 2 4 4 4 4 4 4 4 4 368360 552670 2870.5 555100 683940 706320 444310 362300 402930 367500 480250 342950 515710 30788 568380 649500 702490 461930 385880 414470 358710 460890 2 2 1 2 2 2 2 2 2 2 2 878100 1479900 2707.3 1447800 812650 844260 942630 978130 993520 918560 1195400 817550 1380800 65940 1470300 782090 900310 950930 985950 1015700 899570 1146900 2 2 1 2 2 2 2 2 2 2 2 468530000 282280000 186250000 9190 1575 8567 49189;49190;49191;49192;49193 59526;59527;59528;59529 59528 4 ILSHGGFRK Unmodified 1013.577 0.57704833 1575 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 0 1 By MS/MS By MS/MS 3.83 1.07 1 1 2 2 5 1 33.387 33.301 3;4 3.3688E-05 7689 20211116_3431_TMUAki_TMT10x_P_F4 141.2 69.582 6005200 9523500 92607 9251000 9627800 11403000 7225200 6201800 5796900 6137000 7614000 5592200 8885400 634920 9488900 9176800 11367000 7410200 6566100 6024300 5996400 7288700 5 5 5 5 5 5 5 5 5 5 5 5471100 8689900 84655 8406000 8979600 10964000 6627600 5654000 5289100 5528900 6957900 5094800 8107600 581630 8633800 8556000 10893000 6804200 6012900 5498500 5404900 6660400 4 4 4 4 4 4 4 4 4 4 4 534130 833560 7952.3 844980 648240 438330 597610 547800 507800 608110 656080 497390 777840 53293 855130 620770 474090 606050 553250 525790 591420 628300 1 1 1 1 1 1 1 1 1 1 1 652980000 589030000 63952000 9191 1575 8568 49194;49195;49196;49197;49198;49199 59530;59531;59532;59533;59534 59531 5 ILSKPIEVQVGGR Unmodified 1394.8245 0.82454882 2049 Q7L014 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 0 0 0 1 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 51.447 51.311 3 8.3625E-06 16123 20211116_3429_TMUAki_TMT10x_P_F2 95.822 69.704 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9192 2049 8569 49200;49201;49202 59535;59536;59537 59536 3 ILSLFNSGTVTANSSSASPSVAAGNTPNQNFSTAANSQPQQR Unmodified 4221.0323 0.032269365 2865 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 yes yes 0 0 0 0 By MS/MS By matching 5 0 2 1 1 75.672 75.693 4 1.6921E-33 25259 20211116_3433_TMUAki_TMT10x_P_F5 146.78 141.51 736700 1194900 1760 1169000 661110 1178600 835680 786690 574380 694500 966030 685880 1114900 51322 1194500 637730 1191300 830450 816870 609670 682080 919770 2 2 1 2 2 2 2 2 2 2 2 736700 1194900 1760 1169000 661110 1178600 835680 786690 574380 694500 966030 685880 1114900 51322 1194500 637730 1191300 830450 816870 609670 682080 919770 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 874050000 462500000 411560000 9193 2865 8570 49203;49204 59538;59539 59539 2 ILSTIDRELLKPNASVALHK Unmodified 2217.2845 0.28450171 1032 P43686;P43686-2 PSMC4 26S protease regulatory subunit 6B yes no 0 0 0 2 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 65.078 64.726 5 9.6761E-26 22150 20211116_3430_TMUAki_TMT10x_P_F3 179.41 161.25 9396500 14994000 232190 15822000 12333000 16694000 9339100 11199000 10666000 11730000 11681000 8750800 13994000 1036600 16096000 11764000 16829000 9670700 11679000 10829000 11435000 11236000 2 2 2 2 2 2 2 2 2 2 2 4983100 7332100 158410 7633700 7211000 11598000 5379400 5705500 5214200 6295500 5766600 4640900 6842700 591960 7825600 6877800 11439000 5547200 6116000 5331400 6124200 5545700 1 1 1 1 1 1 1 1 1 1 1 4413500 7662300 73783 8188700 5121600 5095300 3959700 5493200 5451600 5434900 5914000 4110000 7151700 444590 8270400 4886100 5390500 4123400 5563300 5497200 5310400 5690700 1 1 1 1 1 1 1 1 1 1 1 3040500000 1970300000 1070200000 9194 1032 8571 49205;49206;49207 59540;59541 59540 2 ILTEAEIDAHLVALAERD Unmodified 1978.0371 0.037120373 1280 P60900;P60900-2;P60900-3 PSMA6 Proteasome subunit alpha type-6 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 3 1 2 77.671 77.645 3 9.0903E-12 27252 20211116_3439_TMUAki_TMT10x_S_F1 122.22 108.8 4486400 7086900 94491 7117700 5080200 6726700 5332200 4465100 4417100 4773000 5371800 4178000 6613000 468330 7253200 4883200 6826000 5367100 4663100 4567600 4648900 5152400 2 2 2 2 2 2 2 2 2 2 2 2265600 3329100 69949 3378100 2205900 4259100 2446900 2205200 2260200 2191800 2654000 2110100 3106600 252190 3455900 2125400 4238400 2463600 2345400 2321500 2141200 2548100 1 1 1 1 1 1 1 1 1 1 1 2220800 3757800 24542 3739600 2874300 2467600 2885300 2259900 2157000 2581200 2717700 2068000 3506400 216140 3797200 2757800 2587600 2903600 2317800 2246100 2507700 2604400 1 1 1 1 1 1 1 1 1 1 1 968370000 612000000 356380000 9195 1280 8572 49208;49209;49210 59542;59543;59544 59543 3 ILTERGYSFTTTAER Unmodified 1743.8792 0.87916317 1276;1406 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 0 1 By MS/MS By MS/MS 6.8 0.748 2 2 1 3 2 46.711 46.976 3 3.8285E-30 14111 20211116_3435_TMUAki_TMT10x_P_F7 211.12 194.65 24184000 38882000 308570 41510000 31799000 34344000 26264000 25376000 26217000 24090000 30348000 22520000 36291000 2399300 42055000 30370000 35228000 26929000 26214000 26820000 23581000 29147000 4 4 4 4 4 4 4 4 4 4 4 11194000 18169000 208840 18825000 19918000 23616000 13370000 12677000 13210000 12290000 14358000 10424000 16956000 1244800 19230000 18946000 23517000 13899000 13429000 13486000 12019000 13815000 2 2 2 2 2 2 2 2 2 2 2 12991000 20713000 99722 22686000 11882000 10728000 12894000 12699000 13007000 11800000 15989000 12096000 19335000 1154400 22825000 11424000 11711000 13029000 12785000 13334000 11561000 15332000 2 2 2 2 2 2 2 2 2 2 2 2317500000 1499400000 818170000 9196 1276;1406 8573 49211;49212;49213;49214;49215 59545;59546;59547;59548 59547 4 ILTFDQLALDSPK Unmodified 1459.7922 0.79224564 1534 Q07020;Q07020-2 RPL18 60S ribosomal protein L18 yes no 0 0 0 0 By MS/MS By MS/MS 7.03 0.636 1 10 44 14 42 27 35.443 35.494 2;3 1.9429E-44 27462 20211116_3446_TMUAki_TMT10x_S_F7 293.71 251.83 327350000 552710000 2518800 499860000 345890000 439650000 347160000 280060000 224240000 275050000 373800000 304790000 515540000 26732000 512770000 331650000 448010000 348270000 292650000 238810000 268840000 355960000 62 62 29 62 62 62 62 62 62 62 62 160090000 260690000 1616700 237590000 142990000 287480000 160650000 139570000 111470000 133440000 179520000 149060000 243170000 13139000 244760000 137560000 286460000 160500000 149190000 117970000 130580000 171070000 37 37 17 37 37 37 37 37 37 37 37 167260000 292010000 902120 262270000 202900000 152170000 186510000 140490000 112780000 141610000 194280000 155730000 272370000 13593000 268010000 194090000 161550000 187760000 143460000 120850000 138260000 184890000 25 25 12 25 25 25 25 25 25 25 25 60411000000 30736000000 29675000000 9197 1534 8574 49216;49217;49218;49219;49220;49221;49222;49223;49224;49225;49226;49227;49228;49229;49230;49231;49232;49233;49234;49235;49236;49237;49238;49239;49240;49241;49242;49243;49244;49245;49246;49247;49248;49249;49250;49251;49252;49253;49254;49255;49256;49257;49258;49259;49260;49261;49262;49263;49264;49265;49266;49267;49268;49269;49270;49271;49272;49273;49274;49275;49276;49277;49278;49279;49280;49281;49282;49283;49284 59549;59550;59551;59552;59553;59554;59555;59556;59557;59558;59559;59560;59561;59562;59563;59564;59565;59566;59567;59568;59569;59570;59571;59572;59573;59574;59575;59576;59577;59578;59579;59580;59581;59582;59583;59584;59585;59586;59587;59588;59589;59590;59591;59592;59593;59594;59595;59596;59597;59598;59599;59600;59601;59602;59603;59604;59605;59606;59607;59608;59609;59610;59611;59612;59613;59614;59615;59616;59617;59618;59619 59614 71 ILTFLESTYIPPSYISEMEK Oxidation (M) 2376.1811 0.181067 2286 Q8TEM1;Q8TEM1-2 NUP210 Nuclear pore membrane glycoprotein 210 yes no 0 0 1 0 By MS/MS 7 0 1 1 81.174 81.208 3 0.0029757 28738 20211116_3446_TMUAki_TMT10x_S_F7 59.372 39.116 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9198 2286 8575 49285 59620 59620 2654 1 ILTIEVKK Unmodified 942.61137 0.61136815 804 P25685;P25685-2 DNAJB1 DnaJ homolog subfamily B member 1 yes no 0 0 0 1 By MS/MS 1 0 1 1 52.808 52.808 3 0.024768 15165 20211116_3428_TMUAki_TMT10x_P_F1 61.78 22.07 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9199 804 8576 49286 59621 59621 1 ILTPIIFKEENLR Unmodified 1584.9239 0.92392852 1439 P82650 MRPS22 28S ribosomal protein S22, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 3 2.92 2 1 1 1 3 70.683 70.534 3 1.7688E-14 24406 20211116_3439_TMUAki_TMT10x_S_F1 161.04 138.12 2697700 4505400 17907 4481600 3292400 2759500 2757300 1624300 1634900 1695700 2924800 2511900 4203900 248670 4547900 3144500 2891900 2790000 1710900 1758100 1653200 2781600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2697700 4505400 17907 4481600 3292400 2759500 2757300 1624300 1634900 1695700 2924800 2511900 4203900 248670 4547900 3144500 2891900 2790000 1710900 1758100 1653200 2781600 1 1 1 1 1 1 1 1 1 1 1 269150000 0 269150000 9200 1439 8577 49287;49288;49289;49290 59622;59623;59624;59625 59623 4 ILTPLVSLDTPGK Unmodified 1352.7915 0.79151736 2862 Q9HC38-2;Q9HC38 GLOD4 Glyoxalase domain-containing protein 4 yes no 0 0 0 0 By MS/MS By MS/MS 5.44 3.17 3 2 4 4 5 76.601 76.582 2;3 1.1863E-43 24990 20211116_3436_TMUAki_TMT10x_P_F8 279.62 211.4 71901000 114710000 664210 116600000 83449000 109230000 85835000 68638000 66256000 72027000 85991000 66948000 107050000 6307000 118710000 80087000 110820000 86335000 71936000 68961000 70206000 82342000 9 9 4 9 9 9 9 9 9 9 9 45080000 69690000 391660 71737000 50519000 83373000 55545000 43666000 41454000 45456000 53024000 41974000 65035000 3918300 73213000 48573000 83325000 55643000 46454000 43199000 44321000 50793000 5 5 2 5 5 5 5 5 5 5 5 26821000 45023000 272550 44868000 32930000 25857000 30290000 24972000 24802000 26571000 32967000 24974000 42010000 2388700 45499000 31514000 27494000 30692000 25482000 25762000 25885000 31549000 4 4 2 4 4 4 4 4 4 4 4 9599900000 4910100000 4689800000 9201 2862 8578 49291;49292;49293;49294;49295;49296;49297;49298;49299 59626;59627;59628;59629;59630;59631;59632;59633;59634;59635 59628 10 ILTTEGR Unmodified 788.43922 0.43921744 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 By MS/MS 3.25 1.09 1 2 1 4 33.02 32.955 2 0.013978 6768 20211116_3440_TMUAki_TMT10x_S_F2 94.407 43.441 1235800 2133900 7534.7 2190300 1317300 1133800 1476300 1119000 1260900 1185000 1626600 1150700 1991400 110440 2214700 1267500 1219900 1482500 1140500 1305100 1154600 1557800 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1235800 2133900 7534.7 2190300 1317300 1133800 1476300 1119000 1260900 1185000 1626600 1150700 1991400 110440 2214700 1267500 1219900 1482500 1140500 1305100 1154600 1557800 3 3 2 3 3 3 3 3 3 3 3 56408000 0 56408000 9202 1546 8579 49300;49301;49302;49303 59636;59637;59638 59636 3 ILTTNTWSSELSK Unmodified 1478.7617 0.76167379 283 O60701;O60701-3;O60701-2 UGDH UDP-glucose 6-dehydrogenase yes no 0 0 0 0 By MS/MS 8 0 1 1 66.358 66.498 3 0.0054248 20831 20211116_3436_TMUAki_TMT10x_P_F8 64.499 50.593 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9203 283 8580 49304 59639 59639 1 ILVANRGEIACR Unmodified 1370.7453 0.74525264 503 P05165;P05165-3;P05165-2 PCCA Propionyl-CoA carboxylase alpha chain, mitochondrial yes no 0 0 0 1 By MS/MS 1 0 1 1 36.591 36.531 3 0.042769 10562 20211116_3439_TMUAki_TMT10x_S_F1 50.314 24.609 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9204 503 8581 49305 59640 59640 1 ILVATNLFGR Unmodified 1102.6499 0.64987892 1665;63 O00148;Q13838;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B no no 0 0 0 0 By MS/MS By MS/MS 4.22 1.31 1 2 2 2 2 5 4 71.764 71.652 2 4.2817E-25 23187 20211116_3431_TMUAki_TMT10x_P_F4 257.96 200.51 69375000 117310000 388380 106240000 89785000 120830000 83105000 96919000 88905000 86810000 90724000 64596000 109420000 6188400 109390000 85932000 121660000 84826000 99445000 90257000 85199000 87462000 13 13 9 13 13 13 13 13 13 13 13 38902000 62902000 225850 57438000 48720000 88324000 49911000 52605000 47696000 47453000 48638000 36222000 58674000 3440600 59444000 46750000 87271000 50496000 55134000 48653000 46557000 46890000 8 8 6 8 8 8 8 8 8 8 8 30473000 54409000 162520 48806000 41065000 32508000 33194000 44314000 41209000 39357000 42086000 28374000 50749000 2747800 49942000 39182000 34387000 34330000 44312000 41604000 38642000 40572000 5 5 3 5 5 5 5 5 5 5 5 18991000000 9716000000 9274700000 9205 63;1665 8582 49306;49307;49308;49309;49310;49311;49312;49313;49314 59641;59642;59643;59644;59645;59646;59647;59648;59649;59650;59651;59652;59653 59645 13 ILVAVVK Unmodified 740.51601 0.5160112 74 O00232;O00232-2 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 59.696 59.383 2 0.0069426 19910 20211116_3430_TMUAki_TMT10x_P_F3 114.67 71.894 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9206 74 8583 49315;49316;49317 59654;59655;59656 59655 3 ILVDQVTGVSR Unmodified 1185.6717 0.67173657 815;1717 P26378;P26378-4;P26378-2;P26378-5;P26378-1;P26378-3;Q14576-2;Q14576 ELAVL4;ELAVL3 ELAV-like protein 4;ELAV-like protein 3 no no 0 0 0 0 By MS/MS By MS/MS 6.2 0.748 1 2 2 2 3 53.77 54.09 2 6.4509E-12 16968 20211116_3435_TMUAki_TMT10x_P_F7 178.46 142.58 24908000 40697000 122410 42765000 35848000 44072000 27911000 37480000 37233000 34129000 36167000 23191000 37983000 2206000 43501000 34173000 44669000 29015000 38340000 37433000 33470000 34922000 5 5 2 5 5 5 5 5 5 5 5 13840000 22340000 110090 22692000 24940000 33702000 18610000 20949000 20517000 18820000 19726000 12887000 20847000 1313300 23290000 23755000 33368000 19267000 21879000 20761000 18468000 19053000 3 3 1 3 3 3 3 3 3 3 3 11067000 18357000 12325 20073000 10909000 10370000 9300600 16531000 16716000 15309000 16441000 10304000 17135000 892730 20212000 10418000 11301000 9747600 16461000 16671000 15002000 15869000 2 2 1 2 2 2 2 2 2 2 2 5562100000 2622600000 2939500000 9207 815;1717 8584 49318;49319;49320;49321;49322 59657;59658;59659;59660;59661 59658 5 ILVDVEKVDWDK Unmodified 1457.7766 0.77659558 620 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 1 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 70.068 70.083 3 5.0142E-06 21701 20211116_3434_TMUAki_TMT10x_P_F6 110.98 86.709 7363700 11084000 196780 11804000 10028000 12737000 9426600 5980500 4784800 5790200 8527000 6857800 10345000 831210 12005000 9612400 12767000 9449600 6415800 5203700 5662800 8109800 2 2 2 2 2 2 2 2 2 2 2 7363700 11084000 196780 11804000 10028000 12737000 9426600 5980500 4784800 5790200 8527000 6857800 10345000 831210 12005000 9612400 12767000 9449600 6415800 5203700 5662800 8109800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 451770000 451770000 0 9208 620 8585 49323;49324;49325 59662;59663;59664 59663 3 ILVGTNLVR Unmodified 983.61277 0.61276513 2541 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 2 3 54.715 54.44 2 5.5845E-07 17912 20211116_3430_TMUAki_TMT10x_P_F3 178.65 105.33 14281000 24307000 26396 24525000 18947000 21508000 15822000 19769000 20488000 17908000 20231000 13296000 22682000 1195800 24959000 18085000 22058000 16357000 20132000 20630000 17566000 19524000 3 3 1 3 3 3 3 3 3 3 3 5868000 9224200 26396 9947200 10028000 12984000 7450500 7560800 8547400 7336300 7969800 5463800 8609800 569360 10142000 9552100 12918000 7726100 7954200 8627000 7174200 7706100 1 1 1 1 1 1 1 1 1 1 1 8412600 15083000 0 14578000 8918900 8523700 8371600 12208000 11940000 10571000 12261000 7832400 14072000 626410 14817000 8533000 9139600 8630700 12178000 12003000 10392000 11818000 2 2 0 2 2 2 2 2 2 2 2 2142200000 703330000 1438900000 9209 2541 8586 49326;49327;49328;49329;49330 59665;59666;59667;59668;59669 59666 5 ILVKKEELTLEGIR Unmodified 1639.9873 0.98725705 1277 P60842;P60842-2 EIF4A1 Eukaryotic initiation factor 4A-I yes no 0 0 0 2 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 59.097 59.055 4 6.1836E-05 17700 20211116_3436_TMUAki_TMT10x_P_F8 98.508 94.474 18253000 32192000 72258 31285000 30770000 40761000 24034000 27342000 25177000 24443000 25448000 16995000 30035000 1655800 32121000 29332000 40639000 24766000 28390000 25573000 23992000 24540000 4 4 1 4 4 4 4 4 4 4 4 13277000 23259000 72258 22966000 25892000 35733000 19644000 19700000 18403000 17684000 18079000 12362000 21702000 1264600 23640000 24669000 35255000 20214000 20779000 18765000 17354000 17450000 2 2 1 2 2 2 2 2 2 2 2 4975300 8932800 0 8319100 4878100 5028200 4389400 7641500 6774300 6759500 7369100 4632300 8333000 391160 8481000 4663800 5384100 4551700 7611000 6808400 6638000 7090300 2 2 0 2 2 2 2 2 2 2 2 1612000000 782440000 829540000 9210 1277 8587 49331;49332;49333 59670;59671;59672;59673 59670 4 ILVLDDTNHER Unmodified 1323.6783 0.67827852 581 P09543;P09543-2 CNP 2',3'-cyclic-nucleotide 3'-phosphodiesterase yes no 0 0 0 0 By MS/MS 4 0 1 1 42.876 43.091 3 2.3276E-05 11969 20211116_3442_TMUAki_TMT10x_S_F4 100.09 74.427 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9211 581 8588 49334 59674 59674 1 ILVLDDTNHERER Unmodified 1608.822 0.82198264 581 P09543;P09543-2 CNP 2',3'-cyclic-nucleotide 3'-phosphodiesterase yes no 0 0 0 1 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 36.418 36.322 4 6.6399E-06 10185 20211116_3429_TMUAki_TMT10x_P_F2 102.62 97.014 1282200 2061300 18456 2099800 1564900 1330600 1358300 1280800 1364800 1181000 1621300 1194000 1923600 127470 2127900 1496500 1401800 1388800 1301800 1397300 1157600 1556100 4 4 4 4 4 4 4 4 4 4 4 323660 459690 9070.8 569660 606750 597000 382680 333390 370210 327200 435440 301430 429350 39252 573790 576700 600580 399490 352090 379480 319810 418030 1 1 1 1 1 1 1 1 1 1 1 958590 1601600 9384.8 1530100 958180 733550 975670 947410 994610 853820 1185900 892610 1494200 88214 1554100 919750 801230 989340 949670 1017800 837740 1138000 3 3 3 3 3 3 3 3 3 3 3 128940000 47116000 81819000 9212 581 8589 49335;49336;49337;49338 59675;59676;59677;59678 59675 4 ILVQARPGQDIRPIGHDIK Unmodified 2125.212 0.21200547 2913 Q9NQX3;Q9NQX3-2 GPHN Gephyrin;Molybdopterin adenylyltransferase;Molybdopterin molybdenumtransferase yes no 0 0 0 2 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 43.115 42.998 5 2.5834E-12 11369 20211116_3440_TMUAki_TMT10x_S_F2 132.6 95.83 6028000 9243500 35729 9729600 12909000 11903000 7168300 9745100 10099000 7729900 9171300 5612900 8627000 623170 9923900 12235000 11943000 7662000 9956700 10113000 7632500 8875900 5 5 3 5 5 5 5 5 5 5 5 4168800 6249700 29503 6511500 10876000 10310000 5608700 6734500 6994700 5428300 6293300 3881800 5832600 465740 6681100 10298000 10188000 6007500 6988500 7030300 5355400 6092600 3 3 2 3 3 3 3 3 3 3 3 1859200 2993800 6225.5 3218000 2032700 1592900 1559600 3010600 3104500 2301600 2878000 1731100 2794400 157430 3242800 1937200 1754900 1654500 2968200 3082700 2277100 2783300 2 2 1 2 2 2 2 2 2 2 2 699050000 445040000 254010000 9213 2913 8590 49339;49340;49341;49342 59679;59680;59681;59682 59682 4 ILVTLLHTLER Unmodified 1306.7973 0.79727144 2706 Q9BWD1;Q9BWD1-2 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes no 0 0 0 0 By MS/MS 4 0 1 1 79.452 79.428 3 2.6565E-12 26846 20211116_3442_TMUAki_TMT10x_S_F4 142.19 111.54 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9214 2706 8591 49343 59683 59683 1 ILYSQCGDVMR Oxidation (M) 1356.6166 0.61660624 1275;673 P60660;P60660-2;P14649 MYL6;MYL6B Myosin light polypeptide 6;Myosin light chain 6B no no 0 0 1 0 By MS/MS By MS/MS 5.25 1.48 1 1 1 1 1 3 40.721 40.835 2 0.0001623 10079 20211116_3445_TMUAki_TMT10x_S_F6 100.02 89.217 1281400 1947500 0 2446200 1247800 1038000 1062000 1650600 2039900 1305100 1825900 1192900 1819100 71975 2439200 1189600 1158100 1117200 1636900 2024900 1288800 1768000 3 3 0 3 3 3 3 3 3 3 3 158870 252580 0 287420 359330 318970 177560 181000 198930 162550 204240 147920 235820 15780 291220 339960 319900 190270 190440 201630 159520 196860 1 1 0 1 1 1 1 1 1 1 1 1122600 1694900 0 2158800 888520 719020 884460 1469600 1841000 1142500 1621600 1045000 1583300 56195 2148000 849670 838160 926970 1446500 1823200 1129300 1571100 2 2 0 2 2 2 2 2 2 2 2 528810000 14791000 514020000 9215 1275;673 8592 49344;49345;49346;49347 59684;59685;59686;59687 59686 748 4 ILYSQCGDVMR Unmodified 1340.6217 0.62169161 1275;673 P60660;P60660-2;P14649 MYL6;MYL6B Myosin light polypeptide 6;Myosin light chain 6B no no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 49.091 49.218 2 3.2169E-23 13507 20211116_3445_TMUAki_TMT10x_S_F6 242.92 223.07 6658600 11046000 154750 14021000 12028000 10946000 7716100 5854100 5287200 5560000 9096100 6201000 10318000 771460 14048000 11434000 11226000 7977000 6200200 5620300 5442300 8656800 3 3 3 3 3 3 3 3 3 3 3 4213700 7045200 105020 8825100 10169000 9586000 6137900 4017000 3558600 3698900 5872600 3924200 6580600 530630 8888700 9655700 9593500 6356900 4355800 3815300 3625600 5593400 2 2 2 2 2 2 2 2 2 2 2 2444900 4000700 49733 5196200 1858400 1360000 1578200 1837100 1728600 1861200 3223500 2276800 3737500 240830 5159200 1777900 1632800 1620100 1844500 1805000 1816700 3063400 1 1 1 1 1 1 1 1 1 1 1 568900000 298520000 270380000 9216 1275;673 8592 49348;49349;49350 59688;59689;59690;59691 59690 4 IMAQIER Oxidation (M) 875.45349 0.4534873 260;844 P28370-2;P28370;O60264 SMARCA1;SMARCA5 Probable global transcription activator SNF2L1;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 no no 0 0 1 0 By MS/MS 3 0 1 1 33.355 33.116 2 0.075188 10268 20211116_3441_TMUAki_TMT10x_S_F3 68.081 9.887 421910 708220 13360 772940 462760 489730 476860 488810 572720 462010 619080 392940 661090 48003 779720 444880 516350 485930 496230 580100 452330 595770 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 421910 708220 13360 772940 462760 489730 476860 488810 572720 462010 619080 392940 661090 48003 779720 444880 516350 485930 496230 580100 452330 595770 1 1 1 1 1 1 1 1 1 1 1 19572000 0 19572000 9217 844;260 8593 49351 59692 59692 205 1 IMASSPDMDLATVSALRK 2 Oxidation (M) 1936.9598 0.95979803 902 P32322;P32322-2;P32322-3 PYCR1 Pyrroline-5-carboxylate reductase 1, mitochondrial yes no 0 0 2 1 By MS/MS 7 0 1 1 54.188 54.909 3 6.023E-05 17260 20211116_3435_TMUAki_TMT10x_P_F7 78.228 67.889 2321100 3979500 37548 3742900 3701200 5375400 2992700 4190300 4079000 3550500 3431800 2161400 3712400 246760 3859500 3533400 5348800 3106300 4301100 4079200 3494000 3330600 1 1 1 1 1 1 1 1 1 1 1 2321100 3979500 37548 3742900 3701200 5375400 2992700 4190300 4079000 3550500 3431800 2161400 3712400 246760 3859500 3533400 5348800 3106300 4301100 4079200 3494000 3330600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 700740000 700740000 0 9218 902 8594 49352 59693 59693 1110;1111 1 IMASSPDMDLATVSALRK Oxidation (M) 1920.9649 0.96488341 902 P32322;P32322-2;P32322-3 PYCR1 Pyrroline-5-carboxylate reductase 1, mitochondrial yes no 0 0 1 1 By MS/MS By MS/MS 7 0 2 1 1 59.624 60.239 3 6.002E-06 19428 20211116_3435_TMUAki_TMT10x_P_F7 88.283 78.868 4030100 6469000 7050.9 6585500 5180200 7210100 5028500 3949300 3476900 3623000 4947500 3752200 6036700 327270 6719400 4961700 7233400 5060500 4170200 3657200 3551800 4727100 2 2 1 2 2 2 2 2 2 2 2 3818700 6062300 0 6217100 4913200 6972000 4802200 3651300 3196400 3359600 4652300 3555400 5657300 302400 6342800 4706300 6981400 4827200 3871200 3373700 3293200 4442800 1 1 0 1 1 1 1 1 1 1 1 211340 406750 7050.9 368400 267030 238130 226270 298030 280520 263340 295210 196830 379390 24873 376590 255440 251980 233330 298960 283530 258620 284320 1 1 1 1 1 1 1 1 1 1 1 1030500000 634510000 395970000 9219 902 8594 49353;49354 59694 59694 1110;1111 1 IMASSPDMDLATVSALRK Unmodified 1904.97 0.96996879 902 P32322;P32322-2;P32322-3 PYCR1 Pyrroline-5-carboxylate reductase 1, mitochondrial yes no 0 0 0 1 By MS/MS 8 0 1 1 65.263 65.42 3 2.7558E-10 20384 20211116_3436_TMUAki_TMT10x_P_F8 111.77 87.578 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9220 902 8594 49355 59695 59695 1 IMATPEQVGK Oxidation (M) 1088.5536 0.55359527 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 1 0 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 38.493 38.556 2 0.00084236 10086 20211116_3431_TMUAki_TMT10x_P_F4 103.55 74.397 2432800 4120300 24904 3729100 4758400 5705600 3171600 2686600 3145200 2824300 3556100 2265200 3843200 238610 3861500 4523000 5622700 3299200 2888100 3215500 2752600 3417800 3 3 2 3 3 3 3 3 3 3 3 2305300 3906900 24225 3500900 4618300 5574400 3032100 2567200 3003700 2691500 3366900 2146500 3644000 227240 3631200 4388600 5483400 3157600 2765600 3069800 2623500 3236700 2 2 1 2 2 2 2 2 2 2 2 127450 213420 678.7 228220 140170 131170 139490 119480 141560 132780 189230 118670 199200 11377 230320 134420 139350 141590 122470 145620 129130 181060 1 1 1 1 1 1 1 1 1 1 1 168900000 150430000 18471000 9221 647 8595 49356;49357;49358 59696;59697;59698 59696 692 3 IMATSGVVAVR Oxidation (M) 1118.6118 0.61177885 2080 Q7Z460;Q7Z460-3;Q7Z460-2;Q7Z460-4;Q7Z460-5 CLASP1 CLIP-associating protein 1 yes no 0 0 1 0 By MS/MS 8 0 1 1 38.993 39.336 2 0.00089063 9161 20211116_3447_TMUAki_TMT10x_S_F8 85.744 53.873 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9222 2080 8596 49359 59699 59699 2581 1 IMDPNIVGSEHYDVAR Oxidation (M) 1830.857 0.85704752 518 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 3.5 1.12 2 2 2 2 4 4 44.328 44.326 3 1.0403E-07 12427 20211116_3442_TMUAki_TMT10x_S_F4 113.66 97.714 22065000 35054000 500780 40696000 35386000 41113000 24332000 30532000 31804000 27985000 30922000 20547000 32730000 2337900 41125000 33673000 41620000 25491000 31501000 31997000 27436000 29856000 14 14 7 14 14 14 14 14 14 14 14 13315000 20430000 388730 25192000 26618000 32998000 16758000 18271000 19325000 16820000 17921000 12400000 19081000 1587700 25480000 25294000 32803000 17594000 19277000 19498000 16487000 17331000 9 9 5 9 9 9 9 9 9 9 9 8750200 14623000 112050 15504000 8768200 8115500 7573900 12261000 12479000 11165000 13000000 8147500 13649000 750180 15644000 8378900 8816400 7896800 12224000 12499000 10950000 12525000 5 5 2 5 5 5 5 5 5 5 5 4295200000 2338600000 1956600000 9223 518 8597 49360;49361;49362;49363;49364;49365;49366;49367 59700;59701;59702;59703;59704;59705;59706;59707;59708;59709;59710;59711;59712;59713 59711 422 14 IMDPNIVGSEHYDVAR Unmodified 1814.8621 0.8621329 518 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4 1.29 1 1 2 1 1 4 2 51.675 51.702 3 2.3598E-07 15494 20211116_3442_TMUAki_TMT10x_S_F4 103.75 92.847 19960000 34184000 74878 35739000 35087000 43712000 25557000 30510000 28291000 25850000 27457000 18582000 31903000 1538900 36469000 33382000 43742000 26507000 31547000 28632000 25439000 26513000 6 6 1 6 6 6 6 6 6 6 6 14081000 23861000 74878 25303000 29467000 38791000 21567000 22603000 20675000 19272000 19305000 13108000 22271000 1085500 25913000 28036000 38322000 22262000 23699000 21024000 18959000 18665000 4 4 1 4 4 4 4 4 4 4 4 5879100 10322000 0 10436000 5619800 4921000 3989800 7906400 7615200 6578500 8152700 5473700 9632100 453380 10556000 5345500 5420400 4244500 7848300 7607600 6479600 7847900 2 2 0 2 2 2 2 2 2 2 2 2962300000 1625800000 1336500000 9224 518 8597 49368;49369;49370;49371;49372;49373 59714;59715;59716;59717;59718;59719 59718 6 IMDRFNLPR Oxidation (M) 1176.6074 0.60736218 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 1 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 40.542 40.619 3 0.0019635 10164 20211116_3436_TMUAki_TMT10x_P_F8 81.525 63.661 2794200 4476800 83785 5205700 5266800 5317400 3470000 5305300 5633800 4442700 4606800 2602300 4180100 344370 5260800 5010000 5409900 3680700 5368800 5600300 4374500 4475800 4 4 4 4 4 4 4 4 4 4 4 1471300 2348400 35192 2805700 3942200 3932700 2163600 2642600 2823200 2295800 2335600 1370200 2193000 189380 2846800 3737400 3907900 2308000 2741600 2826000 2256500 2268200 2 2 2 2 2 2 2 2 2 2 2 1322900 2128500 48594 2400000 1324600 1384700 1306400 2662700 2810600 2146900 2271200 1232100 1987100 154990 2414100 1272600 1502000 1372600 2627300 2774300 2118000 2207600 2 2 2 2 2 2 2 2 2 2 2 815330000 574800000 240530000 9225 196 8598 49374;49375;49376;49377 59720;59721;59722;59723 59721 147 4 IMDRFNLPR Unmodified 1160.6124 0.61244756 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 49.081 48.976 3 3.4877E-07 15150 20211116_3429_TMUAki_TMT10x_P_F2 176.38 120.81 1453000 2329600 2075.1 2970500 1195700 961590 1070300 1051000 865580 1118200 1879000 1352900 2176200 118790 2955100 1143400 1105500 1085800 1066100 925490 1089400 1781200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1453000 2329600 2075.1 2970500 1195700 961590 1070300 1051000 865580 1118200 1879000 1352900 2176200 118790 2955100 1143400 1105500 1085800 1066100 925490 1089400 1781200 1 1 1 1 1 1 1 1 1 1 1 149410000 0 149410000 9226 196 8598 49378;49379 59724;59725 59724 2 IMEGPAFNFLDAPAVR Oxidation (M) 1762.8712 0.87124102 619 P11177;P11177-2;P11177-3 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 6.14 0.639 1 4 2 3 4 75.11 75.106 2;3 1.4575E-14 23781 20211116_3434_TMUAki_TMT10x_P_F6 146.79 130.41 10879000 18840000 170050 16629000 10603000 15417000 12258000 9733700 10228000 10993000 12702000 10130000 17572000 1050000 17103000 10219000 15653000 12284000 10221000 10582000 10684000 12177000 6 6 5 6 6 6 6 6 6 6 6 6267500 10893000 116610 9598000 4992700 9907500 6416100 5501000 5894200 6442900 7375900 5836400 10159000 603860 9887600 4829700 9975000 6417500 5843600 6071800 6253600 7069400 3 3 2 3 3 3 3 3 3 3 3 4611400 7947700 53432 7031400 5610700 5509200 5841500 4232800 4334200 4550100 5326000 4294000 7412700 446110 7215200 5388800 5677600 5866500 4377500 4510500 4430800 5107100 3 3 3 3 3 3 3 3 3 3 3 2164300000 1137000000 1027300000 9227 619 8599 49380;49381;49382;49383;49384;49385;49386 59726;59727;59728;59729;59730;59731;59732;59733;59734 59729 628 9 IMGIPEEEQMGLLR 2 Oxidation (M) 1646.8008 0.80077819 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 2 0 By MS/MS 3 0 1 1 57.069 56.671 2 0.013507 19863 20211116_3441_TMUAki_TMT10x_S_F3 55.249 43.319 770080 1456400 439.77 1424800 763950 1063400 747720 1767500 2195600 1764800 1600000 717020 1358900 64169 1450400 732130 1121500 804110 1761400 2149100 1723700 1561900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 770080 1456400 439.77 1424800 763950 1063400 747720 1767500 2195600 1764800 1600000 717020 1358900 64169 1450400 732130 1121500 804110 1761400 2149100 1723700 1561900 1 1 1 1 1 1 1 1 1 1 1 224580000 0 224580000 9228 934 8600 49387 59735 59735 1174;1175 1 IMGLDLPDGGHLTHGYMSDVKR 2 Oxidation (M) 2443.1624 0.16241402 915 P34897;P34897-3;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 2 1 By MS/MS By MS/MS 7 0.707 1 2 1 1 3 47.453 47.74 5 4.9523E-05 12923 20211116_3445_TMUAki_TMT10x_S_F6 66.644 52.812 8139300 14417000 196210 14286000 12733000 14386000 8708700 15578000 15753000 13919000 13587000 7579900 13452000 921990 14585000 12119000 14676000 9262100 15729000 15641000 13663000 13174000 6 6 6 6 6 6 6 6 6 6 6 1996600 3841900 50587 3443600 6144200 7592700 3471600 4553800 4371200 3551900 3549800 1859400 3583500 270770 3603200 5827200 7410700 3689000 4753400 4378400 3510300 3449800 1 1 1 1 1 1 1 1 1 1 1 6142700 10575000 145620 10842000 6588600 6793800 5237100 11025000 11382000 10367000 10037000 5720500 9869000 651230 10981000 6292300 7265800 5573100 10976000 11262000 10152000 9724100 5 5 5 5 5 5 5 5 5 5 5 2267600000 1382100000 885450000 9229 915 8601 49388;49389;49390;49391 59736;59737;59738;59739;59740;59741 59738 1147;1148 6 IMGPNYTPGKK Oxidation (M) 1220.6223 0.62234354 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 1 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 36.985 36.886 3 0.0013326 10226 20211116_3429_TMUAki_TMT10x_P_F2 76.522 64.359 2553600 4355100 21482 4491300 5489700 4260800 3101100 2336600 2717600 2352400 3364700 2377800 4064300 271880 4568800 5204900 4311600 3258600 2473200 2804400 2296800 3225700 3 3 2 3 3 3 3 3 3 3 3 1872600 3122300 20119 3123400 4900100 3764400 2368500 1699000 2062600 1663600 2418000 1743700 2913400 215430 3195900 4636000 3748900 2525400 1830600 2124300 1626200 2321500 2 2 1 2 2 2 2 2 2 2 2 680980 1232800 1362.8 1367900 589520 496450 732610 637510 655030 688810 946690 634070 1150900 56447 1372900 568940 562670 733240 642600 680130 670620 904210 1 1 1 1 1 1 1 1 1 1 1 377190000 344230000 32960000 9230 653 8602 49392;49393;49394 59742;59743;59744 59743 708 3 IMGPNYTPGKK Unmodified 1204.6274 0.62742892 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 41.362 41.239 3 0.072955 10686 20211116_3440_TMUAki_TMT10x_S_F2 41.383 24.751 760010 1215500 4063 1426100 626020 558160 752090 651060 667630 588630 971960 707680 1135000 64920 1427000 603670 624240 753670 655400 693700 577460 928190 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 760010 1215500 4063 1426100 626020 558160 752090 651060 667630 588630 971960 707680 1135000 64920 1427000 603670 624240 753670 655400 693700 577460 928190 1 1 1 1 1 1 1 1 1 1 1 125090000 0 125090000 9231 653 8602 49395;49396 59745 59745 1 IMHFPTWVDLK Unmodified 1385.7166 0.71657828 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 74.728 74.571 3 2.4316E-05 27075 20211116_3441_TMUAki_TMT10x_S_F3 101.3 72.489 9288500 13493000 42692 16647000 7608100 9027400 9335700 4303900 4102500 4619000 8560900 8648600 12602000 759600 16646000 7339300 9560400 9217300 4623700 4560800 4498100 8120400 4 4 3 4 4 4 4 4 4 4 4 6312900 9241100 42692 11109000 5493500 7583100 6509100 3462600 3319900 3559100 6059500 5878200 8629900 551690 11148000 5295500 7850000 6450700 3731400 3614200 3472100 5760500 3 3 3 3 3 3 3 3 3 3 3 2975600 4252100 0 5538400 2114700 1444300 2826600 841300 782650 1059800 2501500 2770400 3972500 207910 5498000 2043800 1710400 2766600 892350 946640 1026100 2359900 1 1 0 1 1 1 1 1 1 1 1 908970000 598000000 310970000 9232 2334 8603 49397;49398;49399 59746;59747;59748;59749 59749 4 IMHFPTWVDLK Oxidation (M) 1401.7115 0.7114929 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 1 0 By MS/MS 2 0 1 1 65.261 65.028 3 0.0034779 20418 20211116_3440_TMUAki_TMT10x_S_F2 63.408 45.677 3286700 6013500 0 5452800 3235600 2844100 3444900 2896400 2666100 3087500 3687000 3059900 5609100 226280 5563400 3104700 3059500 3459300 2947900 2782600 3007600 3525100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3286700 6013500 0 5452800 3235600 2844100 3444900 2896400 2666100 3087500 3687000 3059900 5609100 226280 5563400 3104700 3059500 3459300 2947900 2782600 3007600 3525100 1 1 0 1 1 1 1 1 1 1 1 405820000 0 405820000 9233 2334 8603 49400 59750 59750 2680 1 IMHFPTWVDLKGEDSVPDTVHHVVVPVNPK Oxidation (M) 3407.7336 0.73363191 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 1 1 By MS/MS By MS/MS 5.4 3.03 4 1 1 3 6 8 7 65.891 65.983 5;6 2.7042E-10 19200 20211116_3447_TMUAki_TMT10x_S_F8 92.463 82.315 127170000 207670000 1532600 192910000 133410000 175170000 131830000 90748000 79376000 94742000 133020000 118410000 193720000 11311000 197570000 127920000 177650000 132180000 96646000 84950000 92365000 126660000 24 24 15 24 24 24 24 24 24 24 24 76880000 120650000 679590 112860000 76222000 126270000 82293000 55473000 49517000 57814000 79128000 71584000 112550000 6526500 115890000 73249000 126220000 82141000 60044000 52860000 56367000 75415000 14 14 8 14 14 14 14 14 14 14 14 50291000 87011000 852990 80048000 57187000 48901000 49541000 35275000 29859000 36928000 53888000 46830000 81165000 4784100 81688000 54675000 51433000 50042000 36602000 32090000 35998000 51240000 10 10 7 10 10 10 10 10 10 10 10 40124000000 24482000000 15642000000 9234 2334 8604 49401;49402;49403;49404;49405;49406;49407;49408;49409;49410;49411;49412;49413;49414;49415 59751;59752;59753;59754;59755;59756;59757;59758;59759;59760;59761;59762;59763;59764;59765;59766;59767;59768;59769;59770;59771;59772;59773 59770 2680 23 IMHFPTWVDLKGEDSVPDTVHHVVVPVNPK Unmodified 3391.7387 0.73871729 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 1 By MS/MS By MS/MS 4.62 3.16 2 2 1 3 5 3 69.23 69.216 5;6 2.1936E-21 21731 20211116_3428_TMUAki_TMT10x_P_F1 140.09 130.63 139930000 226340000 3394900 222620000 148800000 169430000 147120000 126210000 86243000 104120000 153270000 130310000 211180000 14425000 225370000 142810000 174910000 147430000 129840000 92779000 102600000 145780000 19 19 15 18 19 19 19 19 19 19 19 74299000 112430000 1963300 124010000 63888000 108290000 73753000 55000000 42333000 49861000 74258000 69193000 104950000 7580300 125450000 61608000 110090000 73322000 58456000 45574000 48909000 70646000 11 11 10 11 11 11 11 11 11 11 11 65626000 113910000 1431700 98619000 84909000 61136000 73367000 71205000 43909000 54260000 79014000 61114000 106230000 6844200 99914000 81199000 64819000 74111000 71381000 47205000 53692000 75135000 8 8 5 7 8 8 8 8 8 8 8 19460000000 10896000000 8564200000 9235 2334 8604 49416;49417;49418;49419;49420;49421;49422;49423 59774;59775;59776;59777;59778;59779;59780;59781;59782;59783;59784;59785;59786;59787;59788;59789;59790;59791 59774 18 IMLFTNEDNPHGNDSAK Oxidation (M) 1917.8527 0.85269042 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 1 0 By MS/MS By MS/MS 4.55 0.988 2 3 4 2 8 3 47.053 47.189 3;4 5.4057E-08 13620 20211116_3442_TMUAki_TMT10x_S_F4 114.28 104.52 17772000 28479000 281310 36771000 42950000 45919000 22041000 40799000 45000000 30313000 33378000 16550000 26605000 2034500 37063000 40670000 46100000 24161000 41426000 44363000 30038000 32558000 10 10 8 10 10 10 10 10 10 10 10 10624000 16366000 140870 21192000 37893000 40725000 17861000 24719000 26319000 18125000 19561000 9892500 15289000 1340300 21571000 35835000 39923000 19427000 25743000 26166000 17973000 19079000 6 6 4 6 6 6 6 6 6 6 6 7148600 12113000 140440 15578000 5056400 5194800 4179900 16080000 18681000 12189000 13817000 6657100 11316000 694250 15492000 4834700 6177100 4734600 15683000 18197000 12064000 13479000 4 4 4 4 4 4 4 4 4 4 4 4460200000 3065000000 1395200000 9236 647 8605 49424;49425;49426;49427;49428;49429;49430;49431;49432;49433;49434 59792;59793;59794;59795;59796;59797;59798;59799;59800;59801;59802;59803;59804 59801 693 13 IMLFTNEDNPHGNDSAK Unmodified 1901.8578 0.8577758 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 By MS/MS By MS/MS 5.17 0.687 1 3 2 4 2 51.632 51.796 3 1.715E-15 15357 20211116_3433_TMUAki_TMT10x_P_F5 147.12 140.39 17225000 28272000 256260 35626000 39518000 38403000 24377000 19394000 17224000 17902000 23685000 16040000 26408000 1960200 35866000 37525000 38524000 25297000 20633000 18065000 17545000 22648000 8 8 6 8 8 8 8 8 8 8 8 14180000 22877000 217740 28682000 37419000 36645000 22578000 16538000 14766000 15065000 19566000 13204000 21368000 1685100 28969000 35518000 36388000 23436000 17786000 15534000 14774000 18726000 7 7 5 7 7 7 7 7 7 7 7 3044800 5394800 38516 6943900 2099000 1758500 1798800 2856100 2457900 2836900 4118500 2835300 5039800 275090 6897000 2007400 2135900 1860700 2847900 2530600 2771500 3921500 1 1 1 1 1 1 1 1 1 1 1 2137000000 1605800000 531200000 9237 647 8605 49435;49436;49437;49438;49439;49440 59805;59806;59807;59808;59809;59810;59811;59812 59807 8 IMLKGDNITLLQSVSN Oxidation (M) 1760.9342 0.93423521 1349 P62304 SNRPE Small nuclear ribonucleoprotein E yes yes 0 0 1 1 By MS/MS By MS/MS 5.75 2.77 1 2 1 2 2 71.452 71.595 3 0.00021256 22908 20211116_3436_TMUAki_TMT10x_P_F8 79.771 68.128 8931400 16471000 131610 13931000 12684000 14111000 11864000 13677000 12167000 13261000 12797000 8316700 15360000 875110 14394000 12147000 14355000 12086000 13916000 12387000 12969000 12325000 4 4 3 4 4 4 4 4 4 4 4 2355700 3448200 0 3228600 2875400 5413900 2989400 3844700 3948000 3768600 3094800 2193100 3216700 162010 3341900 2757300 5345300 3056000 3986000 3944100 3683800 3011800 1 1 0 1 1 1 1 1 1 1 1 6575700 13023000 131610 10702000 9808600 8697400 8874600 9832600 8219000 9492400 9702100 6123600 12143000 713100 11052000 9389400 9009500 9030400 9929600 8442800 9284700 9313300 3 3 3 3 3 3 3 3 3 3 3 2641000000 1779100000 861850000 9238 1349 8606 49441;49442;49443;49444 59813;59814;59815;59816 59813 1806 4 IMLKGDNITLLQSVSN Unmodified 1744.9393 0.93932058 1349 P62304 SNRPE Small nuclear ribonucleoprotein E yes yes 0 0 0 1 By MS/MS By MS/MS 5 3 1 1 1 1 76.472 76.456 3 0.042156 25057 20211116_3440_TMUAki_TMT10x_S_F2 44.294 12.905 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9239 1349 8606 49445;49446 59817;59818 59818 2 IMLNTPEDVQALVSGK Oxidation (M) 1729.892 0.89203604 73 O00231;O00231-2 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 0 0 1 0 By MS/MS By MS/MS 6.12 1.05 1 1 2 4 5 3 76.003 76.051 2;3 1.2041E-21 26126 20211116_3435_TMUAki_TMT10x_P_F7 159 136.32 25300000 43745000 642130 42563000 28874000 39553000 31038000 33198000 29234000 32762000 32971000 23562000 40814000 2741000 43460000 27779000 40337000 31314000 34061000 29952000 32015000 31690000 7 7 6 7 7 7 7 7 7 7 7 11564000 19725000 240460 18874000 10628000 21660000 13961000 14263000 12058000 13478000 13797000 10769000 18402000 1169700 19357000 10289000 21728000 13928000 14852000 12412000 13196000 13256000 3 3 3 3 3 3 3 3 3 3 3 13736000 24019000 401670 23689000 18247000 17893000 17077000 18934000 17176000 19284000 19174000 12793000 22412000 1571300 24103000 17490000 18609000 17386000 19209000 17540000 18820000 18435000 4 4 3 4 4 4 4 4 4 4 4 4993700000 3019000000 1974700000 9240 73 8607 49447;49448;49449;49450;49451;49452;49453;49454 59819;59820;59821;59822;59823;59824;59825;59826 59822 37 8 IMLNTPEDVQALVSGK Unmodified 1713.8971 0.89712142 73 O00231;O00231-2 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 78.129 78.187 2;3 2.8223E-10 27492 20211116_3446_TMUAki_TMT10x_S_F7 123.95 99.094 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9241 73 8607 49455;49456 59827;59828 59828 2 IMLPWDPTGK Oxidation (M) 1172.59 0.58998078 783 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 1 0 By MS/MS By MS/MS 5.25 3.31 3 1 4 5 3 73.726 73.717 2;3 0.00058198 23259 20211116_3447_TMUAki_TMT10x_S_F8 110.41 93.868 65177000 108330000 165010 107040000 74442000 85325000 74250000 44662000 38346000 51447000 73854000 60686000 101070000 5527400 108970000 71374000 87350000 74214000 47665000 41842000 49966000 70145000 11 11 5 11 11 11 11 11 11 11 11 35635000 57386000 26342 55331000 43086000 62426000 46280000 24321000 21768000 27910000 38940000 33179000 53540000 2960200 56698000 41387000 62302000 46018000 26758000 23827000 27111000 37032000 6 6 3 6 6 6 6 6 6 6 6 29542000 50939000 138670 51713000 31356000 22899000 27970000 20341000 16578000 23537000 34915000 27507000 47534000 2567300 52270000 29987000 25048000 28196000 20906000 18015000 22856000 33113000 5 5 2 5 5 5 5 5 5 5 5 6296300000 3575200000 2721100000 9242 783 8608 49457;49458;49459;49460;49461;49462;49463;49464 59829;59830;59831;59832;59833;59834;59835;59836;59837;59838;59839;59840 59839 923 12 IMLPWDPTGK Unmodified 1156.5951 0.59506616 783 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 0 By MS/MS 1 0 1 1 77.849 77.849 2 5.9833E-05 25416 20211116_3428_TMUAki_TMT10x_P_F1 130.75 104.36 7353400 11877000 129520 13908000 8475400 9055400 10247000 3152900 2679800 3446700 7439200 6847700 11090000 746070 13973000 8178900 9391800 10067000 3512300 3226300 3354200 7029000 1 1 1 1 1 1 1 1 1 1 1 7353400 11877000 129520 13908000 8475400 9055400 10247000 3152900 2679800 3446700 7439200 6847700 11090000 746070 13973000 8178900 9391800 10067000 3512300 3226300 3354200 7029000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 820590000 820590000 0 9243 783 8608 49465 59841 59841 1 IMNTFSVMPSPK 2 Oxidation (M) 1382.6574 0.65740842 1668;2689;2673 Q13885;Q9BVA1;Q9BUF5 TUBB2A;TUBB2B;TUBB6 Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-6 chain no no 0 0 2 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 50.115 50.046 3 0.00010502 16124 20211116_3439_TMUAki_TMT10x_S_F1 94.191 72.319 14232000 23730000 515060 22988000 20409000 26993000 16801000 22746000 24517000 19868000 23612000 13255000 22139000 1746500 23564000 19510000 27156000 17469000 23255000 24572000 19523000 22806000 5 5 5 5 5 5 5 5 5 5 5 9548000 14464000 395750 14236000 15030000 21314000 11602000 13284000 15060000 12337000 15440000 8893100 13496000 1237200 14645000 14349000 21096000 12055000 13883000 15183000 12088000 14882000 3 3 3 3 3 3 3 3 3 3 3 4683900 9265600 119320 8751200 5379200 5679000 5199000 9462300 9457300 7531500 8172400 4362000 8643900 509260 8918000 5160600 6059900 5414800 9371900 9389300 7435200 7923400 2 2 2 2 2 2 2 2 2 2 2 2023100000 1171200000 851870000 9244 1668;2689;2673 8609 49466;49467;49468;49469 59842;59843;59844;59845;59846 59845 2239;2240;2888;2889 5 IMNTFSVMPSPK Oxidation (M) 1366.6625 0.6624938 1668;2689;2673 Q13885;Q9BVA1;Q9BUF5 TUBB2A;TUBB2B;TUBB6 Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-6 chain no no 0 0 1 0 By MS/MS By MS/MS 2.14 0.639 1 4 2 3 4 59.351 59.073 2;3 1.3612E-05 19248 20211116_3429_TMUAki_TMT10x_P_F2 111.06 84.384 18303000 29721000 138010 31656000 26073000 28157000 22493000 17146000 15097000 17238000 23321000 17043000 27740000 1698400 32105000 24915000 28653000 22774000 17991000 15974000 16832000 22242000 6 6 4 6 6 6 6 6 6 6 6 11043000 17254000 104160 19007000 18421000 22171000 15794000 10155000 8656500 9818800 13734000 10282000 16106000 1076600 19314000 17601000 22121000 15937000 10921000 9299000 9603400 13092000 4 4 3 4 4 4 4 4 4 4 4 7260600 12467000 33849 12648000 7651700 5986000 6699300 6991400 6440100 7418900 9586100 6760400 11634000 621780 12791000 7313800 6531700 6837100 7070400 6674700 7228100 9150000 2 2 1 2 2 2 2 2 2 2 2 2299500000 1257300000 1042200000 9245 1668;2689;2673 8609 49470;49471;49472;49473;49474;49475;49476 59847;59848;59849;59850;59851;59852 59849 2239;2240;2888;2889 6 IMNTFSVMPSPK Unmodified 1350.6676 0.66757917 1668;2689;2673 Q13885;Q9BVA1;Q9BUF5 TUBB2A;TUBB2B;TUBB6 Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-6 chain no no 0 0 0 0 By MS/MS By MS/MS 3.33 0.745 1 2 3 3 3 68.591 68.388 2;3 1.2327E-08 22386 20211116_3442_TMUAki_TMT10x_S_F4 144.7 123.01 39587000 62372000 665690 71108000 45510000 43805000 43652000 24619000 21048000 25396000 42755000 36865000 58232000 3965700 71516000 43629000 45879000 43675000 26023000 23173000 24771000 40572000 9 9 7 9 9 9 9 9 9 9 9 19001000 28989000 380960 33714000 24165000 29146000 24644000 12874000 11157000 13249000 20276000 17695000 27068000 1995400 33992000 23206000 29609000 24555000 13922000 12264000 12924000 19277000 4 4 3 4 4 4 4 4 4 4 4 20586000 33382000 284720 37394000 21344000 14659000 19008000 11745000 9891700 12147000 22479000 19170000 31164000 1970200 37524000 20424000 16270000 19121000 12101000 10909000 11847000 21295000 5 5 4 5 5 5 5 5 5 5 5 2894500000 1387100000 1507300000 9246 1668;2689;2673 8609 49477;49478;49479;49480;49481;49482 59853;59854;59855;59856;59857;59858;59859;59860;59861;59862 59861 10 IMNTFSVVPSPK Oxidation (M) 1334.6904 0.69042311 1418;539;1640;488 Q13509;Q13509-2;P07437;P68371;P04350 TUBB3;TUBB;TUBB4B;TUBB4A Tubulin beta-3 chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain no no 0 0 1 0 By MS/MS By MS/MS 3.79 2.48 6 5 6 4 4 4 14 15 61.331 61.336 2;3 5.3439E-06 17364 20211116_3436_TMUAki_TMT10x_P_F8 104.87 75.538 190590000 302020000 1353700 303930000 252410000 328250000 200500000 274950000 285670000 240980000 264850000 177450000 281830000 16104000 310290000 240680000 331700000 208720000 281220000 286160000 236750000 256140000 40 40 22 40 40 40 40 40 40 40 40 115390000 171680000 643610 174490000 178750000 254960000 136810000 154110000 163370000 135930000 155420000 107430000 160200000 9651500 179020000 170290000 252510000 141780000 161230000 164750000 133510000 150170000 22 22 13 22 22 22 22 22 22 22 22 75197000 130350000 710080 129440000 73662000 73293000 63689000 120840000 122310000 105040000 109430000 70018000 121620000 6452900 131270000 70395000 79197000 66939000 119990000 121400000 103240000 105960000 18 18 9 18 18 18 18 18 18 18 18 69069000000 39902000000 29167000000 9247 1640;539;1418;488 8610 49483;49484;49485;49486;49487;49488;49489;49490;49491;49492;49493;49494;49495;49496;49497;49498;49499;49500;49501;49502;49503;49504;49505;49506;49507;49508;49509;49510;49511 59863;59864;59865;59866;59867;59868;59869;59870;59871;59872;59873;59874;59875;59876;59877;59878;59879;59880;59881;59882;59883;59884;59885;59886;59887;59888;59889;59890;59891;59892;59893;59894;59895;59896;59897;59898;59899;59900;59901;59902;59903;59904;59905 59885 380;466;2204 43 IMNTFSVVPSPK Unmodified 1318.6955 0.69550848 1418;539;1640;488 Q13509;Q13509-2;P07437;P68371;P04350 TUBB3;TUBB;TUBB4B;TUBB4A Tubulin beta-3 chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain no no 0 0 0 0 By MS/MS By MS/MS 3.26 1.47 4 4 27 9 3 31 16 71.777 71.681 2;3 5.0053E-15 24119 20211116_3441_TMUAki_TMT10x_S_F3 186.74 123.9 296430000 473650000 1953500 535790000 336760000 288460000 291760000 145720000 107650000 165930000 315560000 276010000 442200000 24856000 538250000 321750000 305860000 292600000 155960000 124950000 161230000 297970000 54 54 25 53 54 53 54 54 54 54 54 122320000 195040000 414800 205730000 167900000 179770000 153780000 66525000 51501000 73410000 126480000 113880000 182030000 9932100 208470000 160580000 182150000 153550000 73559000 59529000 71412000 119690000 38 38 18 37 38 37 38 38 38 38 38 174110000 278610000 1538700 330060000 168870000 108680000 137980000 79193000 56151000 92522000 189080000 162120000 260170000 14923000 329770000 161180000 123710000 139040000 82406000 65421000 89813000 178280000 16 16 7 16 16 16 16 16 16 16 16 90424000000 48606000000 41818000000 9248 1640;539;1418;488 8610 49512;49513;49514;49515;49516;49517;49518;49519;49520;49521;49522;49523;49524;49525;49526;49527;49528;49529;49530;49531;49532;49533;49534;49535;49536;49537;49538;49539;49540;49541;49542;49543;49544;49545;49546;49547;49548;49549;49550;49551;49552;49553;49554;49555;49556;49557;49558 59906;59907;59908;59909;59910;59911;59912;59913;59914;59915;59916;59917;59918;59919;59920;59921;59922;59923;59924;59925;59926;59927;59928;59929;59930;59931;59932;59933;59934;59935;59936;59937;59938;59939;59940;59941;59942;59943;59944;59945;59946;59947;59948;59949;59950;59951;59952;59953;59954;59955;59956;59957;59958;59959;59960;59961;59962;59963;59964;59965;59966;59967;59968 59962 63 IMNVIGEPIDER Oxidation (M) 1400.697 0.69696505 518 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 52.055 51.835 2 3.013E-07 15580 20211116_3442_TMUAki_TMT10x_S_F4 109.16 91.683 3948600 7190800 74392 6825300 5238000 7194700 3801600 9235500 9890400 7997400 7429200 3677000 6708400 409900 6994300 4990500 7352600 4119700 9250000 9708000 7861700 7242800 3 3 2 3 3 3 3 3 3 3 3 1288200 2256400 29008 2181900 2905600 4231500 1889200 2484900 3014400 2351800 2184100 1199600 2105100 156480 2261800 2762300 4145100 2004200 2610600 2987900 2302400 2132600 1 1 1 1 1 1 1 1 1 1 1 2660400 4934500 45384 4643400 2332400 2963200 1912400 6750700 6876000 5645600 5245000 2477400 4603300 253420 4732400 2228300 3207400 2115500 6639400 6720100 5559300 5110200 2 2 1 2 2 2 2 2 2 2 2 567610000 311830000 255790000 9249 518 8611 49559;49560;49561;49562;49563;49564 59969;59970;59971;59972;59973;59974 59974 423 6 IMNVIGEPIDERGPIK Oxidation (M) 1795.9502 0.95021962 518 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 1 1 By MS/MS By MS/MS 5.14 0.833 2 2 3 4 3 54.308 54.469 3 3.7369E-15 15335 20211116_3434_TMUAki_TMT10x_P_F6 136.63 117.9 10170000 18264000 248530 18381000 13050000 15419000 9734300 21720000 21944000 17102000 17234000 9471200 17043000 1115100 18699000 12445000 16032000 10425000 21627000 21623000 16893000 16771000 4 4 4 4 4 4 4 4 4 4 4 3157000 5447400 64622 5218200 5716900 8846800 4128400 5819400 6372400 4894100 4962000 2940000 5082200 357820 5393800 5445600 8720700 4340200 6041900 6334600 4818000 4830300 2 2 2 2 2 2 2 2 2 2 2 7013000 12817000 183910 13163000 7333400 6572500 5605800 15901000 15572000 12208000 12272000 6531200 11960000 757310 13306000 6999300 7311800 6085100 15585000 15288000 12075000 11941000 2 2 2 2 2 2 2 2 2 2 2 3108400000 1396700000 1711700000 9250 518 8612 49565;49566;49567;49568;49569;49570;49571 59975;59976;59977;59978;59979;59980;59981 59978 423 7 IMNVIGEPIDERGPIK Unmodified 1779.9553 0.955305 518 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 5.5 1.12 2 2 2 2 4 4 62.164 62.263 3 1.9112E-15 20800 20211116_3446_TMUAki_TMT10x_S_F7 155.56 134.1 63985000 99371000 317870 112920000 71852000 58884000 58412000 44051000 38901000 46974000 69215000 59574000 92775000 5028000 113430000 68532000 62987000 59349000 45624000 41504000 45757000 65831000 9 9 4 9 9 9 9 9 9 9 9 15500000 23308000 4533.7 26191000 20230000 25247000 17235000 11417000 10445000 12178000 16805000 14431000 21759000 1304400 26501000 19319000 25467000 17428000 12329000 11149000 11862000 16014000 2 2 1 2 2 2 2 2 2 2 2 48486000 76064000 313330 86730000 51622000 33637000 41178000 32634000 28456000 34797000 52410000 45142000 71016000 3723600 86932000 49213000 37520000 41920000 33295000 30355000 33895000 49816000 7 7 3 7 7 7 7 7 7 7 7 5419400000 1884100000 3535300000 9251 518 8612 49572;49573;49574;49575;49576;49577;49578;49579 59982;59983;59984;59985;59986;59987;59988;59989;59990;59991;59992 59992 11 IMPEDIIINCSK Unmodified 1431.7102 0.71017227 624 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.577 1 4 1 2 4 69.243 69.166 2;3 1.0904E-14 21413 20211116_3444_TMUAki_TMT10x_S_F5 152.7 125.58 12274000 20532000 92489 17491000 14749000 13827000 10898000 18488000 17818000 17472000 17122000 11429000 19147000 1138500 18003000 14051000 14417000 11470000 18531000 17799000 17106000 16538000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12274000 20532000 92489 17491000 14749000 13827000 10898000 18488000 17818000 17472000 17122000 11429000 19147000 1138500 18003000 14051000 14417000 11470000 18531000 17799000 17106000 16538000 1 1 1 1 1 1 1 1 1 1 1 563990000 0 563990000 9252 624 8613 49580;49581;49582;49583;49584;49585 59993;59994;59995;59996;59997 59996 5 IMPEDIIINCSK Oxidation (M) 1447.7051 0.70508689 624 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 1 0 By MS/MS By MS/MS 6 0 2 1 1 63.276 63.274 3 0.044154 19318 20211116_3445_TMUAki_TMT10x_S_F6 40.725 25.752 10025000 16083000 200950 15318000 10972000 15751000 11200000 12582000 12915000 11948000 12665000 9335600 15004000 1030800 15688000 10539000 15948000 11402000 12933000 13055000 11695000 12225000 2 2 1 2 2 2 2 2 2 2 2 4917200 7479700 0 7278300 5966700 10102000 5743900 5678700 5951200 5651000 6039800 4578400 6978600 421440 7481600 5715500 10018000 5844300 5996100 6048400 5520200 5823600 1 1 0 1 1 1 1 1 1 1 1 5107600 8603100 200950 8040100 5005700 5648500 5456200 6903100 6963700 6297400 6624700 4757200 8025500 609310 8206300 4823200 5930000 5557600 6937100 7006300 6175300 6401100 1 1 1 1 1 1 1 1 1 1 1 999060000 428950000 570110000 9253 624 8613 49586;49587 59998;59999 59999 638 2 IMQDFESDTFFPEIDLEK Oxidation (M) 2218.998 0.99801725 464 P00374;P00374-2 DHFR Dihydrofolate reductase yes no 0 0 1 0 By MS/MS By MS/MS 1 0 5 2 3 79.772 79.748 2;3 4.0259E-06 26161 20211116_3428_TMUAki_TMT10x_P_F1 92.671 83.14 8447400 13828000 0 11987000 8006000 12736000 9454600 7369700 8010600 7994300 10132000 7864900 12896000 630560 12370000 7708800 12808000 9469800 7782500 8287800 7781900 9708400 3 3 0 3 3 3 3 3 3 3 3 6623200 10800000 0 9417900 5495100 10432000 7052500 5960700 6373700 6287600 7929300 6166400 10072000 475930 9720600 5304400 10465000 7051200 6295900 6569100 6127300 7601000 2 2 0 2 2 2 2 2 2 2 2 1824200 3028000 0 2569100 2510900 2303600 2402100 1408900 1636900 1706800 2202700 1698400 2823800 154630 2649400 2404400 2343000 2418500 1486600 1718800 1654600 2107400 1 1 0 1 1 1 1 1 1 1 1 2784100000 1279100000 1505000000 9254 464 8614 49588;49589;49590;49591;49592 60000;60001;60002;60003;60004 60000 349 5 IMQDFESDTFFPEIDLEK Unmodified 2203.0031 0.003102632 464 P00374;P00374-2 DHFR Dihydrofolate reductase yes no 0 0 0 0 By matching By MS/MS 1 0 2 1 1 81.163 81.149 3 2.949E-05 28691 20211116_3439_TMUAki_TMT10x_S_F1 80.975 64.852 4177000 6835300 0 6541700 5093600 4279900 5250800 3220300 3219800 3685600 4613000 3888900 6377000 324800 6660500 4885700 4475800 5255000 3341600 3413900 3580400 4406800 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4177000 6835300 0 6541700 5093600 4279900 5250800 3220300 3219800 3685600 4613000 3888900 6377000 324800 6660500 4885700 4475800 5255000 3341600 3413900 3580400 4406800 2 2 0 2 2 2 2 2 2 2 2 1543100000 982740000 560390000 9255 464 8614 49593;49594 60005;60006 60005 2 IMQIHSR Unmodified 883.46981 0.46980607 711 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 0 0 By MS/MS 1 0 1 1 30.758 30.807 3 0.033415 8190 20211116_3439_TMUAki_TMT10x_S_F1 56.721 19.562 140710 244610 3663.1 248680 148830 129640 182610 129640 126120 133970 181240 131050 228260 15194 251630 143780 139410 181720 131940 132730 130660 173130 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 140710 244610 3663.1 248680 148830 129640 182610 129640 126120 133970 181240 131050 228260 15194 251630 143780 139410 181720 131940 132730 130660 173130 1 1 1 1 1 1 1 1 1 1 1 5629900 0 5629900 9256 711 8615 49595 60007 60007 1 IMQSSSEVGYDAMAGDFVNMVEK 3 Oxidation (M) 2555.0866 0.08659104 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 3 0 By MS/MS By MS/MS 3.58 0.954 2 3 5 2 7 5 63.148 63.041 3;4 1.7209E-07 21260 20211116_3430_TMUAki_TMT10x_P_F3 88.684 75.228 31366000 56881000 641440 45446000 37979000 63026000 37321000 70191000 74137000 63391000 53303000 29208000 53033000 3135900 47433000 36428000 63283000 39031000 70801000 73071000 62191000 52065000 20 20 12 20 20 20 20 20 20 20 20 15247000 26015000 363160 20990000 16983000 39917000 19253000 30568000 31517000 28117000 24463000 14199000 24256000 1592800 22051000 16361000 39287000 19790000 31478000 31276000 27562000 23817000 9 9 6 9 9 9 9 9 9 9 9 16119000 30866000 278280 24456000 20995000 23109000 18068000 39623000 42620000 35274000 28840000 15010000 28778000 1543100 25382000 20067000 23996000 19240000 39323000 41795000 34629000 28247000 11 11 6 11 11 11 11 11 11 11 11 17868000000 11294000000 6574000000 9257 613 8616 49596;49597;49598;49599;49600;49601;49602;49603;49604;49605;49606;49607 60008;60009;60010;60011;60012;60013;60014;60015;60016;60017;60018;60019;60020;60021;60022;60023;60024;60025;60026;60027 60009 605;606;607 20 IMQSSSEVGYDAMAGDFVNMVEK 2 Oxidation (M) 2539.0917 0.091676418 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 2 0 By MS/MS By MS/MS 4.06 1.19 4 7 10 9 4 15 19 72.142 72.054 3;4 5.4932E-16 26047 20211116_3441_TMUAki_TMT10x_S_F3 137.72 122.46 96820000 163690000 1231500 145130000 111050000 140140000 113600000 89574000 81436000 99910000 118550000 90156000 152670000 9055200 149290000 106600000 141940000 114100000 93934000 85571000 97152000 113210000 49 49 35 49 49 49 49 49 49 49 49 45673000 74585000 675190 65367000 42851000 81827000 50085000 40608000 37080000 45582000 53775000 42530000 69561000 4240800 67583000 41302000 81418000 50022000 43517000 38884000 44313000 51358000 21 21 17 21 21 21 21 21 21 21 21 51147000 89104000 556360 79763000 68201000 58314000 63514000 48965000 44356000 54328000 64771000 47626000 83109000 4814400 81710000 65298000 60520000 64077000 50417000 46687000 52839000 61851000 28 28 18 28 28 28 28 28 28 28 28 22810000000 10953000000 11857000000 9258 613 8616 49608;49609;49610;49611;49612;49613;49614;49615;49616;49617;49618;49619;49620;49621;49622;49623;49624;49625;49626;49627;49628;49629;49630;49631;49632;49633;49634;49635;49636;49637;49638;49639;49640;49641 60028;60029;60030;60031;60032;60033;60034;60035;60036;60037;60038;60039;60040;60041;60042;60043;60044;60045;60046;60047;60048;60049;60050;60051;60052;60053;60054;60055;60056;60057;60058;60059;60060;60061;60062;60063;60064;60065;60066;60067;60068;60069;60070;60071;60072;60073;60074;60075;60076;60077;60078 60056 605;606;607 51 IMQSSSEVGYDAMAGDFVNMVEK Unmodified 2507.1018 0.10184717 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3.75 1.71 1 1 2 1 1 2 3 5 79.353 79.33 3 2.3575E-15 25830 20211116_3445_TMUAki_TMT10x_S_F6 124.66 115.84 63718000 105180000 655890 113660000 80578000 63152000 85588000 28617000 25123000 35540000 69892000 59330000 98178000 5744500 114590000 77403000 66674000 84682000 31046000 29793000 34425000 66036000 14 14 8 14 14 14 14 14 14 14 14 18984000 30415000 142410 34316000 19703000 26610000 23819000 8514800 7862100 11320000 20284000 17676000 28395000 1604700 34617000 18997000 27177000 23452000 9654400 9137400 10940000 19183000 4 4 2 4 4 4 4 4 4 4 4 44734000 74767000 513480 79341000 60875000 36542000 61768000 20103000 17261000 24220000 49608000 41653000 69783000 4139800 79978000 58406000 39497000 61230000 21392000 20656000 23485000 46853000 10 10 6 10 10 10 10 10 10 10 10 8323800000 2627100000 5696700000 9259 613 8616 49642;49643;49644;49645;49646;49647;49648;49649 60079;60080;60081;60082;60083;60084;60085;60086;60087;60088;60089;60090;60091;60092 60091 14 IMQSSSEVGYDAMAGDFVNMVEK Oxidation (M) 2523.0968 0.096761796 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 78.445 78.374 3 2.8011E-11 28600 20211116_3441_TMUAki_TMT10x_S_F3 111.53 102.93 3874100 6855200 0 6278300 5790400 3207100 4732100 2376000 2006000 2617400 4504600 3606700 6394400 297840 6399700 5522200 3437900 4770900 2464900 2248700 2546300 4268100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3874100 6855200 0 6278300 5790400 3207100 4732100 2376000 2006000 2617400 4504600 3606700 6394400 297840 6399700 5522200 3437900 4770900 2464900 2248700 2546300 4268100 1 1 0 1 1 1 1 1 1 1 1 1480900000 0 1480900000 9260 613 8616 49650;49651;49652 60093;60094;60095 60094 605;606;607 3 IMRPDDANVAGNVHGGTILK Oxidation (M) 2093.0688 0.068771627 64 O00154-4;O00154;O00154-6;O00154-7;O00154-2;O00154-3 ACOT7 Cytosolic acyl coenzyme A thioester hydrolase yes no 0 0 1 1 By MS/MS By MS/MS 6.33 0.745 1 2 3 3 3 35.028 35.291 4 1.0003E-12 12307 20211116_3446_TMUAki_TMT10x_S_F7 126.9 103.34 6264600 9768700 120920 12575000 10597000 11080000 6526000 10828000 11313000 8192100 10024000 5833800 9125800 685810 12608000 10066000 11374000 6980700 10943000 11254000 8109500 9709600 6 6 4 6 6 6 6 6 6 6 6 2839100 4429400 83954 5469200 7999500 8647200 4192800 5378500 5750800 4372000 4563900 2644100 4137000 385900 5553500 7579700 8539700 4500200 5603300 5740100 4311400 4439400 2 2 2 2 2 2 2 2 2 2 2 3425500 5339300 36968 7106200 2598000 2432500 2333300 5449100 5562300 3820100 5460000 3189700 4988800 299910 7054800 2486200 2834100 2480600 5339300 5513800 3798000 5270300 4 4 2 4 4 4 4 4 4 4 4 7450900000 5386800000 2064100000 9261 64 8617 49653;49654;49655;49656;49657;49658 60096;60097;60098;60099;60100;60101 60101 32 6 IMRPDDANVAGNVHGGTILK Unmodified 2077.0739 0.073857005 64 O00154-4;O00154;O00154-6;O00154-7;O00154-2;O00154-3 ACOT7 Cytosolic acyl coenzyme A thioester hydrolase yes no 0 0 0 1 By MS/MS By MS/MS 7.2 0.748 1 2 2 2 3 45.648 45.904 4 3.3249E-24 11964 20211116_3447_TMUAki_TMT10x_S_F8 163.62 142.97 35171000 60849000 910080 73703000 45127000 39649000 34041000 32976000 28924000 31440000 50230000 32753000 56827000 3781800 73772000 43038000 42342000 34951000 33818000 30405000 30769000 47795000 10 10 6 10 10 10 10 10 10 10 10 9738000 15054000 156630 18665000 22355000 20594000 14818000 9622500 8684900 8643400 12737000 9068100 14061000 1109800 18815000 21254000 20614000 15235000 10308000 9247500 8481900 12162000 3 3 2 3 3 3 3 3 3 3 3 25433000 45795000 753450 55038000 22772000 19055000 19223000 23353000 20239000 22797000 37492000 23685000 42766000 2672000 54957000 21784000 21728000 19716000 23511000 21158000 22287000 35633000 7 7 4 7 7 7 7 7 7 7 7 5296900000 2632200000 2664700000 9262 64 8617 49659;49660;49661;49662;49663 60102;60103;60104;60105;60106;60107;60108;60109;60110;60111 60111 10 IMSSPLSK Unmodified 861.46299 0.46298935 1306 P61254;Q9UNX3 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 0 0 0 0 By MS/MS 1 0 1 1 49.653 49.653 2 0.0096755 13878 20211116_3428_TMUAki_TMT10x_P_F1 81.548 37.101 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9263 1306 8618 49664 60112 60112 1 IMSSPLSK Oxidation (M) 877.4579 0.45790397 1306 P61254;Q9UNX3 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 0 0 1 0 By MS/MS 7.5 0.5 1 1 2 39.105 39.563 2 0.089247 9558 20211116_3447_TMUAki_TMT10x_S_F8 56.378 32.406 1377700 2551600 0 2493800 1382900 1119900 1303500 1454000 1632800 1349500 1875000 1282700 2380700 97214 2527600 1322900 1233200 1336500 1458300 1655300 1322300 1801300 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1377700 2551600 0 2493800 1382900 1119900 1303500 1454000 1632800 1349500 1875000 1282700 2380700 97214 2527600 1322900 1233200 1336500 1458300 1655300 1322300 1801300 2 2 0 2 2 2 2 2 2 2 2 77718000 0 77718000 9264 1306 8618 49665;49666 60113;60114 60114 1763 2 IMVANIEEVLQR Oxidation (M) 1429.7599 0.75989966 331 O75396 SEC22B Vesicle-trafficking protein SEC22b yes yes 0 0 1 0 By MS/MS By MS/MS 5 0.577 1 4 1 3 3 70.283 70.301 2;3 5.7912E-08 22989 20211116_3433_TMUAki_TMT10x_P_F5 111.94 67.627 11347000 19618000 34591 16410000 13249000 21582000 13902000 14063000 14328000 14481000 14703000 10564000 18294000 800520 17045000 12709000 21498000 14080000 14690000 14571000 14126000 14172000 5 5 1 5 5 5 5 5 5 5 5 8544500 14643000 0 12260000 9876800 18394000 10665000 10911000 11559000 11317000 11196000 7954200 13655000 537180 12767000 9477800 18192000 10804000 11483000 11707000 11036000 10812000 3 3 0 3 3 3 3 3 3 3 3 2802200 4974800 34591 4150500 3372400 3188400 3237100 3152000 2769300 3164200 3506600 2609300 4638900 263340 4278000 3231700 3306700 3276100 3207000 2863900 3089800 3359900 2 2 1 2 2 2 2 2 2 2 2 2510700000 1408900000 1101900000 9265 331 8619 49667;49668;49669;49670;49671;49672 60115;60116;60117;60118;60119 60117 243 5 IMVVGSTINDVLAVNTPK Unmodified 1870.0234 0.023384564 116 O14562 UBFD1 Ubiquitin domain-containing protein UBFD1 yes yes 0 0 0 0 By MS/MS 2 0 1 1 78.796 78.772 3 1.1909E-06 26004 20211116_3440_TMUAki_TMT10x_S_F2 99.451 79.873 2484600 4263400 72068 4547800 3616500 2887300 3358500 1806700 1664900 2204200 3241200 2313900 3979300 289010 4594600 3465500 3019500 3367700 1903300 1823800 2136400 3077900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2484600 4263400 72068 4547800 3616500 2887300 3358500 1806700 1664900 2204200 3241200 2313900 3979300 289010 4594600 3465500 3019500 3367700 1903300 1823800 2136400 3077900 1 1 1 1 1 1 1 1 1 1 1 463070000 0 463070000 9266 116 8620 49673 60120 60120 1 IMYTVFEHTFHVR Oxidation (M) 1694.8239 0.8238969 1001 P41250 GARS Glycine--tRNA ligase yes yes 0 0 1 0 By MS/MS By MS/MS 4.5 3.5 3 3 3 3 54.098 53.901 3;4 8.0978E-12 17605 20211116_3439_TMUAki_TMT10x_S_F1 149.41 136.62 3665400 5739800 38271 6472400 4763400 5725500 3954900 5816700 6014200 5643300 5548100 3413100 5358600 264500 6540000 4549000 5880900 4117600 5904200 6011700 5518700 5366500 5 5 2 5 5 5 5 5 5 5 5 856610 1169800 0 1722100 1835700 2929400 1302000 1684400 1823700 1696300 1405100 797590 1093600 0 1735900 1746800 2881800 1364700 1775700 1817600 1656200 1368400 2 2 0 2 2 2 2 2 2 2 2 2808800 4570000 38271 4750300 2927700 2796100 2652900 4132300 4190400 3947000 4143000 2615500 4265000 264500 4804100 2802300 2999100 2752900 4128500 4194100 3862500 3998000 3 3 2 3 3 3 3 3 3 3 3 1436100000 848660000 587460000 9267 1001 8621 49674;49675;49676;49677;49678;49679 60121;60122;60123;60124;60125;60126;60127;60128 60125 1290 8 IMYTVFEHTFHVR Unmodified 1678.829 0.82898227 1001 P41250 GARS Glycine--tRNA ligase yes yes 0 0 0 0 By MS/MS 3 0 1 1 67.425 66.962 4 9.5837E-16 24135 20211116_3441_TMUAki_TMT10x_S_F3 178.71 156.56 1016700 1536400 21157 1756500 1228500 921880 1134400 1027800 895020 1080300 1381500 946750 1434400 99486 1763900 1176400 993010 1148200 1041200 938270 1052900 1317700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1016700 1536400 21157 1756500 1228500 921880 1134400 1027800 895020 1080300 1381500 946750 1434400 99486 1763900 1176400 993010 1148200 1041200 938270 1052900 1317700 2 2 1 2 2 2 2 2 2 2 2 621870000 0 621870000 9268 1001 8621 49680 60129;60130 60130 2 INAAEIESR Unmodified 1001.5142 0.5141733 1523 Q06124;Q06124-3;Q06124-1 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 0 0 0 0 By MS/MS 2 0 1 1 36.997 37.096 2 0.0071818 8994 20211116_3440_TMUAki_TMT10x_S_F2 74.841 30.532 196150 317750 4492.8 360850 199140 177760 193220 257340 253710 209480 273700 182670 296660 20491 362340 191060 194170 198170 256200 256170 206570 263410 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 196150 317750 4492.8 360850 199140 177760 193220 257340 253710 209480 273700 182670 296660 20491 362340 191060 194170 198170 256200 256170 206570 263410 1 1 1 1 1 1 1 1 1 1 1 4964400 0 4964400 9269 1523 8622 49681 60131 60131 1 INAGMLAQFIDKPVCFVGR Oxidation (M) 2151.0969 0.096900633 927 P35244 RPA3 Replication protein A 14 kDa subunit yes yes 0 0 1 1 By MS/MS By MS/MS 4 0 2 1 1 77.549 77.533 3 3.6906E-08 25664 20211116_3431_TMUAki_TMT10x_P_F4 103.88 93.922 25060000 41425000 196.87 36691000 26014000 40050000 34153000 28922000 30230000 31221000 32243000 23330000 38636000 1764500 37815000 25126000 40343000 34096000 30036000 30997000 30397000 31042000 3 3 1 3 3 3 3 3 3 3 3 7325400 10658000 196.87 10059000 5986900 12382000 7376500 7241500 7593500 8113000 7577800 6820600 9942600 588760 10339000 5775500 12355000 7416300 7648200 7715000 7887700 7310500 1 1 1 1 1 1 1 1 1 1 1 17734000 30767000 0 26632000 20027000 27668000 26777000 21680000 22637000 23108000 24665000 16510000 28694000 1175700 27477000 19351000 27988000 26680000 22388000 23282000 22510000 23731000 2 2 0 2 2 2 2 2 2 2 2 2941600000 1542600000 1398900000 9270 927 8623 49682;49683 60132;60133;60134 60132 1164 3 INAGMLAQFIDKPVCFVGR Unmodified 2135.102 0.10198601 927 P35244 RPA3 Replication protein A 14 kDa subunit yes yes 0 0 0 1 By matching By MS/MS 5.33 0.471 2 1 1 2 78.817 78.822 3 6.5581E-05 25345 20211116_3444_TMUAki_TMT10x_S_F5 78.088 66.445 12304000 17527000 0 18969000 10542000 9513400 14573000 5181900 4619300 6936600 11117000 11455000 16360000 866660 19108000 10201000 10178000 14263000 5539700 5365500 6702400 10523000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12304000 17527000 0 18969000 10542000 9513400 14573000 5181900 4619300 6936600 11117000 11455000 16360000 866660 19108000 10201000 10178000 14263000 5539700 5365500 6702400 10523000 1 1 0 1 1 1 1 1 1 1 1 2836000000 1043800000 1792200000 9271 927 8623 49684;49685;49686 60135 60135 1 INALTAASEAACLIVSVDETIKNPR Unmodified 2655.3902 0.39016535 2609 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 1 By MS/MS By MS/MS 4.83 2.85 3 1 2 1 5 81.934 81.936 3;4 2.3828E-49 27264 20211116_3440_TMUAki_TMT10x_S_F2 217.65 200.05 5014100 8558400 35969 6706600 7480900 6698000 7357000 6167000 5732500 6559100 6658700 4668600 7979000 415560 6972500 7169300 6812100 7418700 6308700 5935800 6389800 6394700 6 6 3 6 6 6 6 6 6 6 6 283160 605610 25626 539520 407760 718720 426230 397130 443380 418110 432420 263840 564850 49104 557740 393000 713910 431910 420630 449930 407490 417480 1 1 1 1 1 1 1 1 1 1 1 4730900 7952800 10342 6167100 7073100 5979300 6930800 5769800 5289100 6141000 6226300 4404700 7414200 366450 6414800 6776300 6098200 6986800 5888000 5485800 5982300 5977200 5 5 2 5 5 5 5 5 5 5 5 1518200000 78838000 1439300000 9272 2609 8624 49687;49688;49689;49690;49691;49692 60136;60137;60138;60139;60140;60141 60137 6 INAWNSPTLPIYEPGLK Unmodified 1912.0094 0.0094490594 283 O60701;O60701-2 UGDH UDP-glucose 6-dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS 1 0 3 2 1 77.785 77.758 2;3 3.7863E-06 25386 20211116_3428_TMUAki_TMT10x_P_F1 92.247 70.874 5967700 9975200 80892 9010000 7432200 10229000 8267300 6629400 6250600 7510400 7921500 5557200 9304300 590670 9278100 7152300 10264000 8279800 6948400 6506500 7298800 7589900 2 2 2 2 2 2 2 2 2 2 2 3282500 5290800 56484 4909200 3252400 5947400 4441900 2987000 2748000 3752000 4177700 3056700 4935400 324360 5050700 3151900 5928300 4391000 3209300 2920500 3632900 3985900 1 1 1 1 1 1 1 1 1 1 1 2685300 4684400 24408 4100700 4179900 4281400 3825400 3642400 3502600 3758500 3743800 2500400 4368900 266310 4227400 4000400 4336100 3888800 3739100 3586000 3665900 3604000 1 1 1 1 1 1 1 1 1 1 1 794250000 498810000 295450000 9273 283 8625 49693;49694;49695 60142;60143;60144 60143 3 INCPVYITK Unmodified 1106.5794 0.57941609 1691 Q14194-2;Q14194 CRMP1 Dihydropyrimidinase-related protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 51.375 51.239 2 0.0010541 16615 20211116_3439_TMUAki_TMT10x_S_F1 104.2 67.805 6345500 10768000 36473 13981000 11195000 9643000 6512500 9420500 10661000 7877100 9786700 5907700 10059000 524300 13971000 10612000 10086000 6979200 9543100 10633000 7756800 9467900 2 2 1 2 2 2 2 2 2 2 2 2732900 4525000 36473 5518000 8280000 7212800 4014600 4195500 4485200 3436600 3983600 2544800 4226000 338260 5584500 7834200 7175600 4309800 4395300 4524500 3387600 3858300 1 1 1 1 1 1 1 1 1 1 1 3612600 6242800 0 8463200 2915500 2430200 2497900 5224900 6176000 4440500 5803100 3362900 5833500 186040 8386800 2778300 2910700 2669400 5147800 6108800 4369200 5609600 1 1 0 1 1 1 1 1 1 1 1 303260000 150030000 153230000 9274 1691 8626 49696;49697;49698 60145;60146;60147 60147 3 INDALSCEYECR Unmodified 1528.6286 0.62862749 1901 Q52LJ0;Q52LJ0-1 FAM98B Protein FAM98B yes no 0 0 0 0 By MS/MS 3 0 1 1 46.463 46.461 2 1.1527E-19 14574 20211116_3430_TMUAki_TMT10x_P_F3 232.19 188.88 1312800 2029000 7951.9 2947400 4874800 4077100 2111000 2120700 2393600 1617400 2128600 1222400 1896700 166140 2958900 4605200 4039900 2294500 2239900 2413300 1600400 2061600 2 2 2 2 2 2 2 2 2 2 2 1312800 2029000 7951.9 2947400 4874800 4077100 2111000 2120700 2393600 1617400 2128600 1222400 1896700 166140 2958900 4605200 4039900 2294500 2239900 2413300 1600400 2061600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 107090000 107090000 0 9275 1901 8627 49699 60148;60149 60149 2 INDFVLSPGPQPYK Unmodified 1573.814 0.81404372 2723 Q9BY44;Q9BY44-3;Q9BY44-4 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 68.459 68.608 2;3 1.3337E-06 21690 20211116_3436_TMUAki_TMT10x_P_F8 113.59 99.427 11953000 20455000 0 20258000 14814000 22221000 15606000 15113000 14228000 14323000 15730000 11129000 19086000 937660 20710000 14218000 22356000 15746000 15701000 14588000 14021000 15128000 3 3 0 3 3 3 3 3 3 3 3 8590200 14522000 0 14477000 11053000 18962000 12478000 11092000 10238000 10446000 11542000 7997800 13551000 677490 14839000 10629000 18864000 12513000 11656000 10559000 10229000 11094000 2 2 0 2 2 2 2 2 2 2 2 3362700 5932600 0 5781400 3760900 3258400 3127900 4020500 3990500 3876200 4188400 3130800 5535200 260170 5870900 3588600 3492200 3232600 4044900 4028900 3791700 4034300 1 1 0 1 1 1 1 1 1 1 1 3031200000 2220700000 810460000 9276 2723 8628 49700;49701;49702 60150;60151;60152 60151 3 INDRFEFPEQLPLDEFLQK Unmodified 2377.1954 0.19541193 2387 Q93009;Q93009-3 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes no 0 0 0 1 By MS/MS By MS/MS 5.57 1.29 1 2 2 2 3 4 79.13 79.146 3 2.1553E-12 25373 20211116_3434_TMUAki_TMT10x_P_F6 132.59 115.9 10855000 18200000 168020 15725000 11245000 18991000 13148000 11618000 11044000 13427000 14698000 10108000 16974000 1029500 16266000 10838000 18980000 13172000 12239000 11457000 13039000 14065000 4 4 3 4 4 4 4 4 4 4 4 8365200 14238000 130560 12123000 7705900 15741000 10051000 9204100 8597600 10192000 11074000 7789500 13277000 773480 12571000 7453500 15666000 10027000 9717500 8898000 9913000 10606000 3 3 2 3 3 3 3 3 3 3 3 2489600 3962800 37455 3602300 3539100 3249600 3097600 2413900 2446600 3235500 3623700 2318300 3696400 256010 3695100 3384600 3313500 3145000 2521100 2559300 3126100 3459200 1 1 1 1 1 1 1 1 1 1 1 3021300000 1224300000 1797000000 9277 2387 8629 49703;49704;49705;49706;49707;49708;49709 60153;60154;60155;60156;60157;60158;60159 60154 7 INEAIVAVQAIIADPK Unmodified 1663.9509 0.95087155 3220 Q9Y224 C14orf166 UPF0568 protein C14orf166 yes yes 0 0 0 0 By MS/MS By MS/MS 5.47 2.8 2 3 1 4 5 7 8 75.642 75.643 2;3 3.9948E-21 26757 20211116_3436_TMUAki_TMT10x_P_F8 172.21 127.05 24280000 39894000 237960 36500000 22895000 37287000 31441000 24156000 24922000 28381000 30271000 22608000 37213000 2141600 37487000 22178000 37641000 31243000 25349000 25829000 27544000 29036000 9 9 5 9 9 9 9 9 9 9 9 13086000 22179000 22441 19939000 12820000 25186000 15832000 13988000 14948000 16119000 16970000 12184000 20687000 1029800 20578000 12365000 25083000 15874000 14851000 15318000 15655000 16307000 4 4 1 4 4 4 4 4 4 4 4 11194000 17715000 215520 16561000 10075000 12100000 15609000 10168000 9973900 12262000 13301000 10424000 16526000 1111800 16910000 9812700 12559000 15369000 10498000 10511000 11889000 12728000 5 5 4 5 5 5 5 5 5 5 5 8555300000 4653400000 3901900000 9278 3220 8630 49710;49711;49712;49713;49714;49715;49716;49717;49718;49719;49720;49721;49722;49723;49724 60160;60161;60162;60163;60164;60165;60166;60167;60168;60169;60170;60171 60165 12 INEAVECLLSLK Unmodified 1387.7381 0.73810158 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 0 By MS/MS By MS/MS 7.6 0.49 2 3 2 3 80.134 80.144 2;3 0.00033856 26466 20211116_3436_TMUAki_TMT10x_P_F8 82.202 62.448 2255700 3409000 89918 3356600 1988200 3621800 2578000 1675500 1658100 2026300 2522600 2100900 3180800 267070 3431900 1926700 3629500 2555600 1812300 1757800 1964600 2406700 1 1 1 1 1 1 1 1 1 1 1 2255700 3409000 89918 3356600 1988200 3621800 2578000 1675500 1658100 2026300 2522600 2100900 3180800 267070 3431900 1926700 3629500 2555600 1812300 1757800 1964600 2406700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 851150000 412910000 438240000 9279 542 8631 49725;49726;49727;49728;49729 60172;60173;60174;60175 60173 4 INEILSNALK Unmodified 1113.6394 0.63937381 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS By MS/MS 5.71 3.01 2 2 3 3 4 71.872 71.931 2;3 1.9195E-08 22590 20211116_3447_TMUAki_TMT10x_S_F8 124.67 81.156 84628000 141010000 969260 144440000 104330000 137550000 93843000 121890000 138870000 123090000 126520000 78801000 131590000 7769000 147010000 99801000 140200000 97131000 124760000 138860000 120170000 122440000 10 10 7 10 10 10 10 10 10 10 10 37176000 59926000 388170 62151000 63676000 91605000 49647000 50503000 56801000 51284000 51166000 34615000 55926000 3540200 63688000 60708000 90580000 51315000 53446000 57272000 50054000 49532000 4 4 3 4 4 4 4 4 4 4 4 47453000 81082000 581080 82290000 40651000 45949000 44196000 71390000 82065000 71809000 75359000 44186000 75663000 4228800 83320000 39093000 49623000 45816000 71313000 81592000 70115000 72903000 6 6 4 6 6 6 6 6 6 6 6 5920300000 3534500000 2385700000 9280 1171 8632 49730;49731;49732;49733;49734;49735;49736 60176;60177;60178;60179;60180;60181;60182;60183;60184;60185;60186;60187 60187 12 INEKPQVIADYESGR Unmodified 1717.8635 0.8635131 296 O60869;O60869-2;O60869-3 EDF1 Endothelial differentiation-related factor 1 yes no 0 0 0 1 By MS/MS By MS/MS 4.12 1.05 3 2 2 1 4 4 48.315 48.375 3 4.8798E-10 13916 20211116_3433_TMUAki_TMT10x_P_F5 136.66 106.93 27220000 44951000 336910 56037000 38459000 37444000 24314000 42105000 44618000 35877000 40967000 25347000 41985000 2695800 56106000 36539000 39397000 26031000 42388000 44373000 35296000 39633000 8 8 6 8 8 8 8 8 8 8 8 9733700 14854000 102340 18598000 26009000 24464000 13554000 13602000 14817000 12082000 13860000 9063600 13875000 1107400 18797000 24630000 24316000 14439000 14332000 14985000 11862000 13400000 2 2 1 2 2 2 2 2 2 2 2 17486000 30096000 234570 37439000 12450000 12979000 10760000 28503000 29801000 23795000 27107000 16283000 28111000 1588400 37309000 11908000 15080000 11592000 28056000 29388000 23434000 26232000 6 6 5 6 6 6 6 6 6 6 6 4517600000 2622200000 1895400000 9281 296 8633 49737;49738;49739;49740;49741;49742;49743;49744 60188;60189;60190;60191;60192;60193;60194;60195;60196 60190 9 INEMVHFDLPGQEERER Oxidation (M) 2113.9851 0.98510158 2973 Q9NVI7;Q9NVI7-2;Q9NVI7-3 ATAD3A ATPase family AAA domain-containing protein 3A yes no 0 0 1 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 45.681 45.679 4 2.0908E-07 12673 20211116_3431_TMUAki_TMT10x_P_F4 102.5 91.243 9723900 16588000 151630 17538000 17757000 19259000 12631000 15089000 14840000 12954000 14377000 9055000 15482000 1058500 17851000 16907000 19420000 13148000 15488000 14984000 12739000 13883000 7 7 6 7 7 7 7 7 7 7 7 7319800 11661000 91698 12646000 14975000 16844000 9901200 10846000 10817000 9371100 10486000 6816100 10885000 798000 12894000 14237000 16766000 10337000 11286000 10953000 9213000 10126000 5 5 4 5 5 5 5 5 5 5 5 2404100 4927200 59927 4892900 2782000 2415200 2729500 4243000 4023100 3582700 3890600 2238900 4597500 260460 4957000 2669800 2654300 2811500 4202000 4031500 3526200 3757200 2 2 2 2 2 2 2 2 2 2 2 1626600000 787820000 838810000 9282 2973 8634 49745;49746;49747;49748 60197;60198;60199;60200;60201;60202;60203 60201 3054 7 INETDTFGPGDDDEIQFDDIGDDDEDIDDI Unmodified 3357.3328 0.33282502 1064 P47813;O14602 EIF1AX;EIF1AY Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal yes no 0 0 0 0 By MS/MS By MS/MS 1.17 0.373 5 1 1 5 83.78 83.773 3;4 2.6627E-15 28997 20211116_3439_TMUAki_TMT10x_S_F1 114.21 113.59 21773000 33642000 323760 35786000 23493000 30737000 25193000 19017000 19760000 22523000 28964000 20275000 31399000 1156300 36281000 22587000 31361000 25298000 20032000 20666000 21853000 27656000 11 11 6 11 11 11 11 11 11 11 11 11722000 16739000 0 19150000 10166000 18803000 12989000 8994400 10829000 11177000 13883000 10915000 15628000 0 19361000 9818800 18957000 12961000 9705300 11219000 10826000 13298000 1 1 0 1 1 1 1 1 1 1 1 10050000 16903000 323760 16637000 13327000 11933000 12204000 10023000 8931200 11346000 15081000 9360200 15771000 1156300 16921000 12769000 12404000 12337000 10326000 9447400 11026000 14358000 10 10 6 10 10 10 10 10 10 10 10 16446000000 10196000000 6250200000 9283 1064 8635 49749;49750;49751;49752;49753;49754 60204;60205;60206;60207;60208;60209;60210;60211;60212;60213;60214 60205 11 INEVQTDVGVDTK Unmodified 1416.7096 0.70963822 1565 Q12792;Q12792-4 TWF1 Twinfilin-1 yes no 0 0 0 0 By MS/MS 3 0 1 1 48.834 48.481 3 0.1057 16510 20211116_3441_TMUAki_TMT10x_S_F3 32.815 10.943 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9284 1565 8636 49755 60215 60215 1 INEWLTLVEK Unmodified 1243.6812 0.68123863 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS 7 0 1 1 79.454 79.495 2 0.066144 28036 20211116_3446_TMUAki_TMT10x_S_F7 59.84 34.985 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9285 1695 8637 49756 60216 60216 1 INFYCPGSALGR Unmodified 1353.65 0.64995528 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 59.797 59.553 2 1.8067E-11 20986 20211116_3441_TMUAki_TMT10x_S_F3 160.81 117.36 49401000 87438000 129630 88956000 66383000 78517000 58245000 56650000 46096000 55943000 66559000 45996000 81594000 4182100 90486000 63437000 80141000 59130000 58680000 48153000 54666000 63574000 7 7 2 7 7 7 7 7 7 7 7 26414000 43923000 0 44173000 39516000 57266000 37238000 28468000 22528000 28087000 32157000 24593000 40986000 2274400 45242000 37826000 56884000 37436000 30386000 23903000 27447000 30722000 3 3 0 3 3 3 3 3 3 3 3 22987000 43514000 129630 44783000 26867000 21251000 21007000 28182000 23569000 27856000 34402000 21403000 40608000 1907600 45244000 25611000 23256000 21694000 28294000 24249000 27219000 32851000 4 4 2 4 4 4 4 4 4 4 4 6673500000 4093800000 2579700000 9286 3317 8638 49757;49758;49759;49760;49761;49762 60217;60218;60219;60220;60221;60222;60223 60222 7 INHEGEVNR Unmodified 1066.5156 0.51557028 1854;1553 Q16576;Q16576-2;Q09028;Q09028-3;Q09028-2;Q09028-4 RBBP7;RBBP4 Histone-binding protein RBBP7;Histone-binding protein RBBP4 no no 0 0 0 0 By MS/MS 3 0 1 1 25.384 25.083 3 0.0043684 7150 20211116_3441_TMUAki_TMT10x_S_F3 66.962 31.344 134310 218030 5151.6 181920 140300 158710 152700 130200 128040 132760 173220 125100 203310 16020 187790 135150 162470 153480 133890 132940 129550 165700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 134310 218030 5151.6 181920 140300 158710 152700 130200 128040 132760 173220 125100 203310 16020 187790 135150 162470 153480 133890 132940 129550 165700 2 2 2 2 2 2 2 2 2 2 2 4174900 0 4174900 9287 1854;1553 8639 49763 60224;60225 60224 2 INIPPQR Unmodified 836.48684 0.48683634 1616 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 7.11 0.809 10 12 14 16 20 30.619 30.864 2 0.014337 10377 20211116_3446_TMUAki_TMT10x_S_F7 88.734 14.544 9308900 14842000 15659 14601000 17330000 16411000 11271000 9776100 10498000 8981800 12151000 8666700 13848000 779590 14940000 16458000 16458000 11725000 10251000 10773000 8804900 11671000 21 21 8 21 21 21 21 21 21 21 21 7795500 12245000 9227.9 12116000 15726000 15073000 9557100 8357000 8981600 7592800 10162000 7257600 11425000 660950 12414000 14918000 15022000 9998900 8812900 9204300 7447000 9766100 12 12 3 12 12 12 12 12 12 12 12 1513300 2597200 6431 2485400 1603700 1338400 1713800 1419100 1516500 1389100 1989400 1409000 2423100 118640 2526300 1540100 1436000 1726500 1437900 1568200 1357900 1904500 9 9 5 9 9 9 9 9 9 9 9 673090000 619570000 53528000 9288 1616 8640 49764;49765;49766;49767;49768;49769;49770;49771;49772;49773;49774;49775;49776;49777;49778;49779;49780;49781;49782;49783;49784;49785;49786;49787;49788;49789;49790;49791;49792;49793;49794;49795;49796;49797;49798;49799 60226;60227;60228;60229;60230;60231;60232;60233;60234;60235;60236;60237;60238;60239;60240;60241;60242;60243;60244;60245;60246;60247;60248;60249;60250;60251;60252;60253;60254;60255;60256;60257;60258;60259;60260;60261;60262;60263;60264 60254 39 INISEGNCPER Unmodified 1287.5877 0.58774895 1791;1792 Q15365;Q15366;Q15366-6;Q15366-3;Q15366-2;Q15366-4;Q15366-5;Q15366-7;Q15366-8;P57721;P57721-2;P57721-3;P57721-5;P57721-4 PCBP1;PCBP2;PCBP3 Poly(rC)-binding protein 1;Poly(rC)-binding protein 2;Poly(rC)-binding protein 3 no no 0 0 0 0 By MS/MS By MS/MS 2.2 0.872 2 5 2 1 3 7 35.067 34.994 2;3 3.9964E-19 8281 20211116_3428_TMUAki_TMT10x_P_F1 233.84 206.1 3522900 5688800 6525.4 5982400 7350900 5014000 3735900 3287600 3836200 2884600 4635200 3279900 5309400 313620 6067800 6955400 5128900 3981600 3417700 3926600 2833900 4446600 8 8 3 8 8 8 8 8 8 8 8 2021800 3142800 0 3381900 5820900 3835800 2179900 1812500 2197800 1573600 2577800 1882200 2933400 189120 3440000 5487800 3834200 2402100 1937700 2248600 1546700 2474900 3 3 0 3 3 3 3 3 3 3 3 1501100 2546000 6525.4 2600500 1530000 1178200 1556000 1475200 1638400 1311000 2057400 1397600 2375900 124500 2627800 1467600 1294600 1579500 1480000 1678000 1287200 1971700 5 5 3 5 5 5 5 5 5 5 5 551110000 305570000 245540000 9289 1791;1792 8641 49800;49801;49802;49803;49804;49805;49806;49807;49808;49809 60265;60266;60267;60268;60269;60270;60271;60272;60273;60274 60265 10 INLAEDVLAWEHER Unmodified 1693.8424 0.84238373 2399 Q969V3;Q969V3-2 NCLN Nicalin yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 74.307 74.262 3 1.7574E-09 23888 20211116_3428_TMUAki_TMT10x_P_F1 130.72 95.059 2474200 4179700 80083 3847100 2514400 3846700 3144900 2489000 2532600 2699900 3154700 2304300 3898900 280320 3948200 2431600 3888300 3138100 2605500 2625300 2628200 3023900 2 2 2 2 2 2 2 2 2 2 2 1454200 2310600 55802 2160400 1301000 2631600 1829600 1399900 1482900 1552500 1761500 1354400 2155500 170420 2221600 1264100 2624200 1817500 1490000 1533700 1510000 1690600 1 1 1 1 1 1 1 1 1 1 1 1020000 1869100 24281 1686700 1213400 1215100 1315300 1089100 1049600 1147400 1393200 949910 1743400 109900 1726600 1167500 1264100 1320600 1115500 1091600 1118200 1333300 1 1 1 1 1 1 1 1 1 1 1 764890000 373330000 391560000 9290 2399 8642 49810;49811 60275;60276 60275 2 INLESEPQEFKPIGTAHNR Unmodified 2179.1022 0.10218025 1904 Q53GG5-2;Q53GG5-3 PDLIM3 PDZ and LIM domain protein 3 yes no 0 0 0 1 By MS/MS By MS/MS 5.5 0.957 1 2 2 1 4 2 46.952 47.164 4 2.9989E-08 12680 20211116_3445_TMUAki_TMT10x_S_F6 108.14 98.354 64771000 106460000 123980 111950000 125400000 110960000 75686000 72406000 63458000 68330000 86091000 60305000 99360000 5736200 113810000 118960000 112230000 78992000 75441000 65896000 66902000 82348000 10 10 2 10 10 10 10 10 10 10 10 38024000 61611000 0 65449000 103470000 92069000 57411000 44276000 38490000 42138000 49705000 35400000 57504000 3497800 66895000 98018000 91077000 60057000 47365000 40383000 41242000 47602000 6 6 0 6 6 6 6 6 6 6 6 26747000 44850000 123980 46505000 21932000 18888000 18275000 28130000 24969000 26192000 36386000 24905000 41856000 2238400 46913000 20943000 21153000 18935000 28076000 25513000 25660000 34746000 4 4 2 4 4 4 4 4 4 4 4 3648400000 2564500000 1083800000 9291 1904 8643 49812;49813;49814;49815;49816;49817 60277;60278;60279;60280;60281;60282;60283;60284;60285 60285 9 INLESEPQEFKPIGTAHNRR Unmodified 2335.2033 0.20329127 1904 Q53GG5-2;Q53GG5-3 PDLIM3 PDZ and LIM domain protein 3 yes no 0 0 0 2 By MS/MS 7 0 1 1 40.586 41.033 5 1.1142E-18 11762 20211116_3435_TMUAki_TMT10x_P_F7 157.51 137.69 1317400 2492800 0 2769100 3359800 4065100 1854500 2355500 2179000 1944400 2178800 1226300 2327100 94533 2824800 3180900 4022900 1969800 2468900 2202500 1915900 2101800 1 1 0 1 1 1 1 1 1 1 1 1317400 2492800 0 2769100 3359800 4065100 1854500 2355500 2179000 1944400 2178800 1226300 2327100 94533 2824800 3180900 4022900 1969800 2468900 2202500 1915900 2101800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 701700000 701700000 0 9292 1904 8644 49818 60286 60286 1 INLIAPPR Unmodified 892.54944 0.54943659 504 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.86 2.7 1 2 2 2 4 3 51.042 50.881 2 0.0018157 13997 20211116_3447_TMUAki_TMT10x_S_F8 117.17 67.144 17926000 28131000 126380 30079000 23941000 24362000 18731000 21222000 20959000 19558000 24119000 16691000 26256000 1645700 30463000 22830000 25100000 19341000 21686000 21336000 19170000 23169000 6 6 2 6 6 6 6 6 6 6 6 7403800 11212000 27537 11797000 13307000 14679000 8755600 8847800 8358200 7647500 9877300 6893900 10464000 719870 12036000 12646000 14645000 9106800 9254100 8574400 7518400 9481200 2 2 1 2 2 2 2 2 2 2 2 10522000 16919000 98845 18282000 10635000 9683000 9975800 12375000 12600000 11910000 14242000 9797200 15793000 925820 18426000 10184000 10455000 10235000 12432000 12762000 11651000 13688000 4 4 1 4 4 4 4 4 4 4 4 2665900000 1720700000 945240000 9293 504 8645 49819;49820;49821;49822;49823;49824;49825 60287;60288;60289;60290;60291;60292;60293 60293 7 INLPAPNPDHVGGYK Unmodified 1590.8154 0.8154407 3141 Q9UJS0;Q9UJS0-2 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 49.05 49.674 3 6.2788E-05 15697 20211116_3446_TMUAki_TMT10x_S_F7 83.633 57.974 2788800 5704000 720.76 6450600 7718800 7751600 4840800 5106200 4783300 4335400 4387200 2596700 5325300 300930 6547400 7328800 7757200 5058900 5302100 4854700 4265900 4244400 1 1 1 1 1 1 1 1 1 1 1 2788800 5704000 720.76 6450600 7718800 7751600 4840800 5106200 4783300 4335400 4387200 2596700 5325300 300930 6547400 7328800 7757200 5058900 5302100 4854700 4265900 4244400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 497420000 497420000 0 9294 3141 8646 49826;49827 60294;60295 60295 2 INLQGDIVDR Unmodified 1141.6091 0.60913632 938 P35611;P35611-2;P35611-4;P35611-6;P35611-3;P35611-5 ADD1 Alpha-adducin yes no 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 50.72 50.358 2 5.6035E-09 15013 20211116_3442_TMUAki_TMT10x_S_F4 150.15 82.658 1888200 2989600 0 3225300 1706000 1424900 1524100 2517600 2381300 2064300 2494500 1758000 2790500 137100 3246800 1630200 1587200 1582000 2491000 2389000 2034800 2402800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1888200 2989600 0 3225300 1706000 1424900 1524100 2517600 2381300 2064300 2494500 1758000 2790500 137100 3246800 1630200 1587200 1582000 2491000 2389000 2034800 2402800 1 1 0 1 1 1 1 1 1 1 1 144770000 0 144770000 9295 938 8647 49828;49829 60296;60297 60297 2 INMAHLCVIGSHAVNGVAR Oxidation (M) 2034.0251 0.025132674 620 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 1 0 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 39.126 39.014 4 1.6031E-12 11196 20211116_3429_TMUAki_TMT10x_P_F2 132.87 117.48 1185900 2019100 60304 2340100 1999000 2042000 1490600 1680600 1723500 1456900 1707000 1104600 1885300 160660 2360200 1907300 2090500 1545800 1720200 1742600 1432100 1647200 4 4 3 4 4 4 4 4 4 4 4 421670 715310 27935 790030 1165100 1291100 659980 687240 675370 575880 588910 392820 667740 71406 808180 1106200 1270800 696330 725880 683330 567020 570770 1 1 1 1 1 1 1 1 1 1 1 764190 1303800 32370 1550100 833850 750850 830640 993340 1048200 880990 1118100 711730 1217500 89252 1552000 801070 819670 849460 994360 1059300 865050 1076400 3 3 2 3 3 3 3 3 3 3 3 293160000 220710000 72449000 9296 620 8648 49830;49831;49832;49833 60298;60299;60300;60301 60298 632 4 INMAHLCVIGSHAVNGVAR Unmodified 2018.0302 0.030218052 620 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 48.383 48.307 4 8.1394E-09 14089 20211116_3442_TMUAki_TMT10x_S_F4 116.6 101.4 1637000 3052900 2594.7 2825500 2678300 2559500 1974300 2522800 2073000 2250600 2375800 1524100 2847800 141680 2894500 2549800 2623000 2042500 2558700 2115300 2209300 2282500 2 2 1 2 2 2 2 2 2 2 2 613120 1079500 2594.7 1128100 1311800 1557500 892200 1069600 960110 917920 962930 570890 1007500 63036 1153900 1247400 1549200 929040 1107600 973880 902730 928810 1 1 1 1 1 1 1 1 1 1 1 1023900 1973400 0 1697300 1366500 1002000 1082100 1453200 1112900 1332700 1412900 953230 1840400 78649 1740700 1302400 1073800 1113500 1451100 1141400 1306600 1353700 1 1 0 1 1 1 1 1 1 1 1 613250000 150070000 463180000 9297 620 8648 49834;49835;49836 60302;60303 60303 2 INNAAFEAVVVTNTIPQEDK Unmodified 2172.1063 0.10626257 633 P11908;P11908-2 PRPS2 Ribose-phosphate pyrophosphokinase 2 yes no 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 74.984 74.959 3 1.7939E-05 24059 20211116_3445_TMUAki_TMT10x_S_F6 79.895 69.108 10977000 19812000 39997 16798000 14351000 12975000 13010000 13123000 13677000 13417000 14488000 10221000 18475000 970800 17292000 13728000 13457000 13287000 13344000 13913000 13092000 13951000 5 5 3 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10977000 19812000 39997 16798000 14351000 12975000 13010000 13123000 13677000 13417000 14488000 10221000 18475000 970800 17292000 13728000 13457000 13287000 13344000 13913000 13092000 13951000 5 5 3 5 5 5 5 5 5 5 5 1337800000 0 1337800000 9298 633 8649 49837;49838;49839 60304;60305;60306;60307;60308;60309 60307 6 INNACFEAVVVTNTIPQEDK Unmodified 2261.0998 0.099796984 1279 P60891;P60891-2 PRPS1 Ribose-phosphate pyrophosphokinase 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.57 1.18 2 1 2 2 4 3 71.731 71.658 3 2.851E-18 22666 20211116_3445_TMUAki_TMT10x_S_F6 147.6 130.1 20070000 35072000 48171 32562000 26728000 27768000 24390000 24172000 22269000 22045000 27994000 18684000 32716000 973370 33324000 25548000 28503000 24797000 24694000 22951000 21618000 26828000 9 9 2 9 9 9 9 9 9 9 9 6747900 11592000 36808 11124000 7481100 13175000 8642900 8866000 7705800 7851800 9470700 6282800 10815000 389920 11412000 7201200 13199000 8677100 9201400 7942900 7710300 9081400 4 4 1 4 4 4 4 4 4 4 4 13322000 23480000 11363 21437000 19247000 14593000 15747000 15306000 14564000 14193000 18524000 12401000 21901000 583450 21911000 18347000 15304000 16120000 15492000 15008000 13908000 17747000 5 5 1 5 5 5 5 5 5 5 5 5793300000 2400900000 3392400000 9299 1279 8650 49840;49841;49842;49843;49844;49845;49846 60310;60311;60312;60313;60314;60315;60316;60317;60318;60319 60318 10 INNCKFDEFFSAGCAPGSPR Unmodified 2272.9994 0.99937143 49 CON__Q29443;CON__Q0IIK2 yes no 0 0 0 1 By MS/MS 1 0 1 1 64.002 63.75 3 0.010872 21671 20211116_3439_TMUAki_TMT10x_S_F1 46.818 40.019 + 5265300 9987800 0 8548700 7465200 5447000 6907100 7427400 6793300 6930500 8027000 4901700 9314300 364610 8776400 7137300 5784900 7031800 7436800 6959700 6789100 7705100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5265300 9987800 0 8548700 7465200 5447000 6907100 7427400 6793300 6930500 8027000 4901700 9314300 364610 8776400 7137300 5784900 7031800 7436800 6959700 6789100 7705100 1 1 0 1 1 1 1 1 1 1 1 727770000 0 727770000 9300 49 8651 49847 60320 60320 1 INNVPAEGENEVNNELANR Unmodified 2094.993 0.99302373 2958 Q9NUQ9;Q9NUQ9-2 FAM49B Protein FAM49B yes no 0 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 50.698 50.506 3 3.2104E-58 14259 20211116_3428_TMUAki_TMT10x_P_F1 243.86 226.98 11144000 19635000 405890 21225000 16821000 22410000 13935000 17533000 17709000 15177000 16288000 10379000 18328000 1360800 21558000 16079000 22647000 14402000 18002000 17800000 14919000 15757000 10 10 8 10 10 10 10 10 10 10 10 6942400 12248000 272760 12923000 13461000 18628000 10789000 10958000 11280000 9707900 9970900 6465900 11431000 900200 13222000 12855000 18452000 11099000 11491000 11407000 9532800 9659100 6 6 4 6 6 6 6 6 6 6 6 4201200 7387200 133130 8301300 3359800 3782800 3145800 6575000 6429400 5468600 6317300 3912700 6896500 460590 8336600 3224200 4195100 3303700 6510900 6393100 5386500 6097600 4 4 4 4 4 4 4 4 4 4 4 3615600000 2549300000 1066300000 9301 2958 8652 49848;49849;49850;49851;49852;49853 60321;60322;60323;60324;60325;60326;60327;60328;60329;60330 60322 10 INPDGSQSVVEVPYAR Unmodified 1729.8635 0.8635131 3237 Q9Y2B0 CNPY2 Protein canopy homolog 2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.3 0.64 1 5 4 5 5 54.081 54.226 2;3 4.8093E-69 15297 20211116_3444_TMUAki_TMT10x_S_F5 301.62 258.9 23868000 43150000 95586 43816000 30084000 32274000 28057000 32260000 31224000 26291000 34936000 22223000 40266000 1953000 44480000 28788000 33590000 28664000 32622000 31759000 25923000 33586000 8 8 4 8 8 8 8 8 8 8 8 11646000 19757000 13810 19314000 18213000 22978000 17181000 15802000 14558000 12572000 16734000 10842000 18434000 939810 19790000 17430000 23021000 17400000 16332000 15002000 12412000 16075000 3 3 1 3 3 3 3 3 3 3 3 12223000 23393000 81776 24502000 11872000 9295300 10876000 16458000 16666000 13719000 18202000 11381000 21832000 1013200 24691000 11359000 10568000 11263000 16290000 16756000 13511000 17511000 5 5 3 5 5 5 5 5 5 5 5 2411700000 1147300000 1264400000 9302 3237 8653 49854;49855;49856;49857;49858;49859;49860;49861;49862;49863 60331;60332;60333;60334;60335;60336;60337;60338;60339;60340;60341;60342;60343 60343 13 INPICNDHYR Unmodified 1300.5983 0.59825406 2510 Q96KB5;Q96KB5-2 PBK Lymphokine-activated killer T-cell-originated protein kinase yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 31.801 31.963 3 0.00018855 8107 20211116_3433_TMUAki_TMT10x_P_F5 86.014 68.195 104180 164830 0 193800 122030 96652 112930 80872 89823 78174 126550 96995 153920 5277.9 194210 116740 104100 114310 82940 93694 76460 120940 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 104180 164830 0 193800 122030 96652 112930 80872 89823 78174 126550 96995 153920 5277.9 194210 116740 104100 114310 82940 93694 76460 120940 2 2 0 2 2 2 2 2 2 2 2 7977600 0 7977600 9303 2510 8654 49864;49865 60344;60345;60346 60344 3 INPLPGGR Unmodified 822.47119 0.47118627 2181 Q8N163;Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 7 0.894 2 1 2 3 2 36.728 37.006 2 0.0069755 10219 20211116_3435_TMUAki_TMT10x_P_F7 90.777 46.055 4180800 5870700 12893 6410800 6440700 5887000 4467600 3291300 3430000 3553900 4749600 3892700 5480000 365650 6494100 6125200 5971200 4602700 3485200 3581700 3460100 4540900 7 7 4 7 7 7 7 7 7 7 7 2561700 3585700 10862 3898600 5082400 4568300 2838100 2055200 2147200 2200900 2918400 2385200 3347000 246130 3965100 4816700 4556100 2974800 2220800 2242000 2143500 2791400 4 4 3 4 4 4 4 4 4 4 4 1619100 2285000 2031.2 2512200 1358300 1318700 1629500 1236100 1282800 1353000 1831200 1507400 2133000 119530 2529000 1308500 1415100 1627900 1264400 1339600 1316600 1749500 3 3 1 3 3 3 3 3 3 3 3 261510000 160710000 100800000 9304 2181 8655 49866;49867;49868;49869;49870 60347;60348;60349;60350;60351;60352;60353 60349 7 INPSSMFDVHVK Unmodified 1372.6809 0.68092105 620 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 59.496 59.585 3 1.789E-06 18015 20211116_3436_TMUAki_TMT10x_P_F8 116.63 93.409 6423000 10638000 50071 10623000 8653600 10195000 7870500 7352500 6922600 6886300 8624500 5980800 9926700 610410 10832000 8280800 10349000 7995000 7605000 7144400 6744700 8267000 2 2 2 2 2 2 2 2 2 2 2 3633700 5918300 41771 5819700 5686400 7510400 5138700 3998900 3730100 3689500 4910500 3383600 5522000 368940 5969300 5441200 7467900 5197400 4233700 3898300 3616100 4700500 1 1 1 1 1 1 1 1 1 1 1 2789300 4720100 8300.5 4803500 2967200 2684900 2731900 3353600 3192500 3196800 3713900 2597200 4404700 241480 4862800 2839700 2880900 2797600 3371300 3246200 3128700 3566500 1 1 1 1 1 1 1 1 1 1 1 492560000 301650000 190920000 9305 620 8656 49871;49872 60354;60355 60354 2 INPVCPADLVIDHSIQVDFNR Unmodified 2421.2111 0.21107877 758 P21399 ACO1 Cytoplasmic aconitate hydratase yes yes 0 0 0 0 By MS/MS By matching 5 0 2 1 1 76.355 76.373 3 0.034565 25496 20211116_3433_TMUAki_TMT10x_P_F5 38.26 24.581 2634900 4040400 62458 3613600 3208800 5653700 3862500 2368800 2142500 2867900 3190200 2453800 3768500 284690 3747100 3097000 5560000 3830400 2589200 2292000 2780400 3045100 1 1 1 1 1 1 1 1 1 1 1 2634900 4040400 62458 3613600 3208800 5653700 3862500 2368800 2142500 2867900 3190200 2453800 3768500 284690 3747100 3097000 5560000 3830400 2589200 2292000 2780400 3045100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 336830000 124850000 211980000 9306 758 8657 49873;49874 60356 60356 1 INPYMSSPCHIEMILTEK 2 Oxidation (M) 2194.0108 0.010847322 721 P18621;P18621-3;P18621-2 RPL17 60S ribosomal protein L17 yes no 0 0 2 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 2 2 63.427 63.631 3 0.00024174 19472 20211116_3445_TMUAki_TMT10x_S_F6 66.152 55.297 14028000 25881000 396500 23124000 16462000 30143000 15876000 22739000 26200000 25438000 20901000 13064000 24140000 1515100 23890000 15791000 30109000 16454000 23574000 26014000 24733000 20327000 6 6 4 6 6 6 6 6 6 6 6 7073800 13019000 219820 11895000 7458400 19819000 8026400 11206000 12566000 12415000 10024000 6588000 12144000 794330 12333000 7178900 19508000 8252400 11864000 12495000 12076000 9748900 3 3 2 3 3 3 3 3 3 3 3 6954700 12862000 176680 11229000 9003800 10324000 7849100 11534000 13634000 13023000 10877000 6476400 11995000 720750 11557000 8611800 10601000 8201100 11710000 13519000 12657000 10578000 3 3 2 3 3 3 3 3 3 3 3 2772300000 1524300000 1247900000 9307 721 8658 49875;49876;49877;49878 60357;60358;60359;60360;60361;60362 60360 825;826 6 INPYMSSPCHIEMILTEK Oxidation (M) 2178.0159 0.0159327 721 P18621;P18621-3;P18621-2 RPL17 60S ribosomal protein L17 yes no 0 0 1 0 By MS/MS 8 0 2 2 65.237 65.183 3 3.8317E-05 21844 20211116_3447_TMUAki_TMT10x_S_F8 81.723 70.453 2199500 3818800 103930 3551200 2908700 2506100 2600500 2576800 2313600 2467900 2637500 2048700 3562400 289140 3626000 2787500 2619100 2645000 2613100 2377700 2414800 2534300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2199500 3818800 103930 3551200 2908700 2506100 2600500 2576800 2313600 2467900 2637500 2048700 3562400 289140 3626000 2787500 2619100 2645000 2613100 2377700 2414800 2534300 1 1 1 1 1 1 1 1 1 1 1 438820000 0 438820000 9308 721 8658 49879;49880 60363;60364 60364 825;826 2 INQDPQVMLAPLISIALK Unmodified 1963.1176 0.1176193 956 P36871;P36871-2;P36871-3 PGM1 Phosphoglucomutase-1 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 82.18 82.152 3 5.4896E-07 30093 20211116_3441_TMUAki_TMT10x_S_F3 100.97 80.859 2740700 4610600 3659.8 4676900 3305500 3523600 3523100 1917100 1818200 2225500 3138900 2551900 4302400 238470 4749300 3175200 3624600 3509400 2039400 1971100 2160800 2987100 3 3 2 3 3 3 3 3 3 3 3 1102400 1875400 1766 1732900 1077600 1973800 1313600 963050 920580 1102700 1365200 1026400 1749400 92693 1781500 1039300 1973200 1307900 1034400 969510 1071200 1303200 1 1 1 1 1 1 1 1 1 1 1 1638400 2735200 1893.7 2944000 2227900 1549800 2209500 954010 897590 1122700 1773600 1525500 2553000 145780 2967800 2135900 1651400 2201500 1005100 1001600 1089600 1683800 2 2 1 2 2 2 2 2 2 2 2 261880000 175030000 86847000 9309 956 8659 49881;49882;49883 60365;60366;60367 60367 3 INQDPQVMLAPLISIALK Oxidation (M) 1979.1125 0.11253392 956 P36871;P36871-2;P36871-3 PGM1 Phosphoglucomutase-1 yes no 0 0 1 0 By MS/MS 2 0 1 1 80.304 80.285 3 6.2336E-06 26614 20211116_3440_TMUAki_TMT10x_S_F2 87.411 68.336 1234100 2211000 0 2066300 1564000 1601100 1833900 1314300 1505000 1371000 1769200 1149000 2062500 92907 2111200 1505500 1653400 1836000 1352400 1554800 1336600 1698500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1234100 2211000 0 2066300 1564000 1601100 1833900 1314300 1505000 1371000 1769200 1149000 2062500 92907 2111200 1505500 1653400 1836000 1352400 1554800 1336600 1698500 1 1 0 1 1 1 1 1 1 1 1 579090000 0 579090000 9310 956 8659 49884 60368 60368 1213 1 INQQEEPGFEVITR Unmodified 1658.8264 0.82639932 2269 Q8TC07-2;Q8TC07;Q8TC07-3 TBC1D15 TBC1 domain family member 15 yes no 0 0 0 0 By MS/MS By MS/MS 3.2 0.4 4 1 3 2 53.983 53.784 2;3 5.6475E-26 17623 20211116_3430_TMUAki_TMT10x_P_F3 196.11 136.68 7053000 11899000 38484 11841000 9394600 11010000 7021900 11161000 10264000 9154500 10030000 6567300 11103000 642880 12072000 8950000 11271000 7347000 11280000 10292000 9023400 9683100 3 3 2 3 3 3 3 3 3 3 3 3173800 4766000 37518 5255500 5396900 7323400 3802600 4172000 4133400 3726200 4290900 2955400 4449000 329230 5357800 5137000 7262200 3950700 4387500 4196100 3657500 4134400 1 1 1 1 1 1 1 1 1 1 1 3879200 7133500 966.34 6585600 3997700 3686800 3219300 6988700 6130700 5428300 5739400 3611800 6654200 313650 6713700 3813000 4008900 3396300 6892300 6095600 5365800 5548700 2 2 1 2 2 2 2 2 2 2 2 813750000 281940000 531810000 9311 2269 8660 49885;49886;49887;49888;49889 60369;60370;60371;60372;60373 60369 5 INRTQAEEMLSGK Unmodified 1475.7402 0.74022685 91 O00459 PIK3R2 Phosphatidylinositol 3-kinase regulatory subunit beta yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 30.806 30.791 4 0.064285 6690 20211116_3431_TMUAki_TMT10x_P_F4 41.218 26.772 1021200 1496000 636.26 1996200 2073800 1445400 1175600 495350 517570 592240 1091600 950830 1397800 94926 1992900 1965600 1485100 1219100 554490 575700 574420 1035200 2 2 1 2 2 2 2 2 2 2 2 1021200 1496000 636.26 1996200 2073800 1445400 1175600 495350 517570 592240 1091600 950830 1397800 94926 1992900 1965600 1485100 1219100 554490 575700 574420 1035200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 125670000 125670000 0 9312 91 8661 49890;49891 60374 60374 1 INSAPQQIEVFPPFR Unmodified 1741.9152 0.91515474 2286 Q8TEM1 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 0 0 0 0 By matching By MS/MS 3.33 3.3 2 1 1 2 71.455 71.348 3 1.3101E-06 22331 20211116_3447_TMUAki_TMT10x_S_F8 105.17 91.141 7147100 12413000 74138 10960000 8689300 7905700 8436200 8012900 7140900 8090800 9363100 6655000 11577000 658670 11238000 8328200 8244600 8530300 8143900 7400200 7898700 8963500 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7147100 12413000 74138 10960000 8689300 7905700 8436200 8012900 7140900 8090800 9363100 6655000 11577000 658670 11238000 8328200 8244600 8530300 8143900 7400200 7898700 8963500 3 3 2 3 3 3 3 3 3 3 3 846760000 120780000 725980000 9313 2286 8662 49892;49893;49894 60375;60376;60377 60377 3 INSGGKLPNFGFVVFDDSEPVQK Unmodified 2493.254 0.25398944 1616 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 5.44 3.17 3 2 4 4 5 77.407 77.406 3;4 2.7172E-15 24762 20211116_3447_TMUAki_TMT10x_S_F8 129.92 112.28 64599000 112230000 601110 92099000 80211000 93758000 72834000 71149000 66425000 64949000 79000000 60150000 104650000 5846200 95403000 76742000 94904000 74066000 73295000 68302000 63688000 75819000 9 9 6 9 9 9 9 9 9 9 9 35569000 61197000 412030 49036000 29403000 60807000 38077000 41863000 37416000 35411000 44132000 33120000 57058000 3136500 51060000 28429000 60795000 38149000 43327000 38332000 34850000 42365000 4 4 3 4 4 4 4 4 4 4 4 29030000 51034000 189080 43063000 50807000 32950000 34757000 29286000 29008000 29538000 34868000 27030000 47590000 2709700 44343000 48313000 34109000 35917000 29968000 29971000 28838000 33454000 5 5 3 5 5 5 5 5 5 5 5 18633000000 8110700000 10522000000 9314 1616 8663 49895;49896;49897;49898;49899;49900;49901;49902;49903 60378;60379;60380;60381;60382;60383;60384;60385;60386;60387;60388 60387 11 INSIEIAPCLL Unmodified 1241.669 0.66895938 2072 Q7Z2W9;Q7Z2W9-2 MRPL21 39S ribosomal protein L21, mitochondrial yes no 0 0 0 0 By MS/MS 5 0.707 1 2 1 4 80.483 80.481 2 0.00020655 26319 20211116_3445_TMUAki_TMT10x_S_F6 97.431 92.979 1040400 1784000 8621.2 1902600 1398200 1150600 1346400 925210 711250 857960 1264200 968750 1665100 99300 1921300 1339800 1213500 1348800 950050 770990 840700 1202400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1040400 1784000 8621.2 1902600 1398200 1150600 1346400 925210 711250 857960 1264200 968750 1665100 99300 1921300 1339800 1213500 1348800 950050 770990 840700 1202400 1 1 1 1 1 1 1 1 1 1 1 1160600000 0 1160600000 9315 2072 8664 49904;49905;49906;49907 60389;60390 60390 2 INSSPNVNTTASGVEDLNIIQVTIPDDDNERLSK Unmodified 3667.8177 0.81769171 1428 P78347;P78347-2;P78347-4;P78347-3 GTF2I General transcription factor II-I yes no 0 0 0 1 By MS/MS 5.5 0.5 1 1 2 75.769 75.765 4 2.9332E-23 25224 20211116_3433_TMUAki_TMT10x_P_F5 129.59 113.83 796160 1146700 0 1088700 721020 1543100 1052400 1055700 1124500 1049400 1025500 741290 1069700 63701 1121500 699590 1533100 1052400 1097800 1137300 1025200 992350 1 1 0 1 1 1 1 1 1 1 1 796160 1146700 0 1088700 721020 1543100 1052400 1055700 1124500 1049400 1025500 741290 1069700 63701 1121500 699590 1533100 1052400 1097800 1137300 1025200 992350 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1182100000 1182100000 0 9316 1428 8665 49908;49909 60391 60391 1 INVELSTK Unmodified 902.5073 0.50729701 2534 Q96PK6;Q96PK6-2 RBM14 RNA-binding protein 14 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 2 2 48.439 48.6 2 0.00051858 12972 20211116_3444_TMUAki_TMT10x_S_F5 138.98 65.727 12438000 20970000 132150 20263000 17627000 20289000 14470000 23377000 22682000 19979000 20815000 11582000 19565000 1226100 20722000 16830000 20737000 15097000 23511000 22649000 19652000 20137000 4 4 3 4 4 4 4 4 4 4 4 3089700 4955900 0 5333600 6131000 8515500 4559800 5584900 5407900 4820100 5250300 2876800 4625800 297830 5462000 5839100 8412900 4733700 5803300 5459000 4739100 5069700 1 1 0 1 1 1 1 1 1 1 1 9348300 16014000 132150 14929000 11496000 11774000 9910300 17793000 17274000 15158000 15565000 8705200 14939000 928280 15260000 10991000 12324000 10363000 17708000 17190000 14913000 15068000 3 3 3 3 3 3 3 3 3 3 3 519500000 246720000 272780000 9317 2534 8666 49910;49911;49912;49913 60392;60393;60394;60395;60396 60394 5 INVLHKPPYEHPK Unmodified 1570.862 0.86199696 180 O15294;O15294-3;O15294-2;O15294-4 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 36.589 36.559 5 1.6339E-06 8563 20211116_3428_TMUAki_TMT10x_P_F1 116.84 101.25 997590 1528000 18819 1833100 1921200 1489200 1192200 1038500 1112500 919420 1212500 928990 1426900 113180 1843400 1825000 1528200 1245000 1075000 1138800 902860 1166600 2 2 2 2 2 2 2 2 2 2 2 496610 815320 9626.7 937690 1466700 1045400 681320 553270 574030 450380 571740 462460 761240 63731 949570 1387200 1047300 728840 584290 588590 444110 551610 1 1 1 1 1 1 1 1 1 1 1 500980 712680 9192.3 895430 454510 443810 510930 485200 538460 469040 640770 466530 665690 49451 893830 437780 480910 516160 490740 550220 458750 614960 1 1 1 1 1 1 1 1 1 1 1 80466000 50261000 30205000 9318 180 8667 49914;49915 60397;60398 60397 2 INVNEIFYDLVR Unmodified 1493.7878 0.78782897 1304 P61224;P61224-2;P61224-3;P62834;A6NIZ1;P61224-4 RAP1B;RAP1A Ras-related protein Rap-1b;Ras-related protein Rap-1A;Ras-related protein Rap-1b-like protein yes no 0 0 0 0 By MS/MS By MS/MS 6.25 0.829 1 1 2 3 1 80.781 80.808 2 1.9968E-19 28162 20211116_3435_TMUAki_TMT10x_P_F7 227.81 187.74 14200000 21961000 0 24940000 14068000 17699000 17039000 9407800 9432300 10838000 15348000 13220000 20503000 977610 25124000 13551000 18291000 16893000 10026000 10138000 10526000 14622000 3 3 0 3 3 3 3 3 3 3 3 6829700 10030000 0 11923000 6558100 10313000 7001100 4175300 4386000 4751000 7211000 6358100 9366200 440410 12006000 6291400 10468000 6997400 4572200 4676600 4616300 6868700 1 1 0 1 1 1 1 1 1 1 1 7370000 11931000 0 13017000 7509800 7385900 10038000 5232400 5046300 6087400 8136800 6861600 11137000 537200 13119000 7259300 7823200 9895500 5454200 5461900 5910000 7753600 2 2 0 2 2 2 2 2 2 2 2 1108900000 666150000 442740000 9319 1304 8668 49916;49917;49918;49919 60399;60400;60401;60402;60403 60401 5 INVRIEHIK Unmodified 1120.6717 0.671677 1052 P46778 RPL21 60S ribosomal protein L21 yes yes 0 0 0 1 By matching By MS/MS 1 0 2 1 1 37.694 37.651 4 0.0039513 11019 20211116_3439_TMUAki_TMT10x_S_F1 76.465 41.641 371950 600900 9759.1 550200 610880 334160 366800 460000 387280 372720 440580 346400 560520 43279 561650 580200 356570 385460 458740 394980 367610 423360 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 371950 600900 9759.1 550200 610880 334160 366800 460000 387280 372720 440580 346400 560520 43279 561650 580200 356570 385460 458740 394980 367610 423360 1 1 1 1 1 1 1 1 1 1 1 54695000 24928000 29767000 9320 1052 8669 49920;49921 60404 60404 1 INVTVAK Unmodified 743.45414 0.45413923 2983 Q9NW13 RBM28 RNA-binding protein 28 yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 43.014 43.307 2 0.0052584 10865 20211116_3447_TMUAki_TMT10x_S_F8 109.36 52.254 2820600 4822000 46548 5189300 2756300 3040200 2753800 3635300 3629600 3502200 4062000 2626600 4500800 276320 5235800 2645600 3243100 2820500 3662100 3669500 3425900 3905100 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2820600 4822000 46548 5189300 2756300 3040200 2753800 3635300 3629600 3502200 4062000 2626600 4500800 276320 5235800 2645600 3243100 2820500 3662100 3669500 3425900 3905100 3 3 3 3 3 3 3 3 3 3 3 75707000 0 75707000 9321 2983 8670 49922;49923;49924 60405;60406;60407;60408 60408 4 INVYYNEAAGNK Unmodified 1354.6517 0.65172941 1668 Q13885 TUBB2A Tubulin beta-2A chain yes yes 0 0 0 0 By MS/MS 6 0 1 1 50.106 50.256 3 0.025538 13964 20211116_3445_TMUAki_TMT10x_S_F6 47.915 32.942 1258500 2043800 20822 2515100 1333500 1256900 1113000 1907400 1817500 1605900 2004800 1172000 1908900 124800 2513700 1274300 1372700 1162300 1897500 1824800 1580800 1928200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1258500 2043800 20822 2515100 1333500 1256900 1113000 1907400 1817500 1605900 2004800 1172000 1908900 124800 2513700 1274300 1372700 1162300 1897500 1824800 1580800 1928200 1 1 1 1 1 1 1 1 1 1 1 206610000 0 206610000 9322 1668 8671 49925 60409 60409 1 INVYYNEAAGNKYVPR Unmodified 1869.9373 0.93734675 1668 Q13885 TUBB2A Tubulin beta-2A chain yes yes 0 0 0 1 By MS/MS 1 0 1 1 52.706 52.425 3 7.4153E-30 17092 20211116_3439_TMUAki_TMT10x_S_F1 197.75 170.11 2382100 4913400 3483.8 3203600 3798100 3720100 1953300 10795000 10108000 8114800 6348400 2217900 4578300 213380 3396700 3595100 3917000 2330200 10538000 9792600 8035800 6240400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2382100 4913400 3483.8 3203600 3798100 3720100 1953300 10795000 10108000 8114800 6348400 2217900 4578300 213380 3396700 3595100 3917000 2330200 10538000 9792600 8035800 6240400 2 2 1 2 2 2 2 2 2 2 2 166140000 0 166140000 9323 1668 8672 49926 60410;60411 60411 2 INVYYNEATGGK Unmodified 1327.6408 0.64083038 1418 P68371 TUBB4B Tubulin beta-4B chain yes yes 0 0 0 0 By MS/MS By MS/MS 5.8 0.748 4 4 2 5 5 52.799 52.988 2;3 1.9522E-30 15022 20211116_3445_TMUAki_TMT10x_S_F6 265.12 216.06 49270000 72607000 181970 107720000 86143000 63918000 46472000 49206000 60458000 41441000 64107000 45871000 67881000 4155700 106760000 81572000 67486000 49646000 50539000 61023000 40794000 61729000 8 8 3 8 8 8 8 8 8 8 8 23201000 33327000 62606 49969000 64780000 47107000 25383000 23075000 28873000 19531000 29726000 21601000 31159000 2301900 49758000 61110000 47626000 27915000 24568000 29251000 19221000 28649000 4 4 1 4 4 4 4 4 4 4 4 26069000 39280000 119360 57755000 21363000 16810000 21089000 26131000 31585000 21910000 34381000 24271000 36721000 1853800 57002000 20462000 19860000 21731000 25971000 31772000 21573000 33080000 4 4 2 4 4 4 4 4 4 4 4 5108800000 2840500000 2268300000 9324 1418 8673 49927;49928;49929;49930;49931;49932;49933;49934;49935;49936 60412;60413;60414;60415;60416;60417;60418;60419;60420 60420 9 INVYYNEATGNK Unmodified 1384.6623 0.6622941 2689 Q9BVA1 TUBB2B Tubulin beta-2B chain yes yes 0 0 0 0 By MS/MS By MS/MS 5.6 1.02 2 2 4 2 5 5 51.544 51.745 2;3 4.4928E-24 14549 20211116_3445_TMUAki_TMT10x_S_F6 247.79 182.49 31884000 48574000 280280 65446000 73196000 60930000 37834000 43276000 45317000 37042000 47679000 29688000 45388000 3362500 65506000 69304000 61953000 40458000 44705000 45859000 36434000 45921000 11 11 6 11 11 11 11 11 11 11 11 21536000 32502000 175870 43690000 63966000 52592000 28941000 29115000 29989000 24318000 31723000 20053000 30370000 2460800 43914000 60459000 52501000 31220000 30643000 30524000 23948000 30548000 7 7 4 7 7 7 7 7 7 7 7 10348000 16072000 104400 21755000 9229900 8337800 8893100 14161000 15328000 12724000 15957000 9635100 15018000 901640 21592000 8845500 9452500 9237500 14061000 15334000 12486000 15373000 4 4 2 4 4 4 4 4 4 4 4 3390000000 2242900000 1147100000 9325 2689 8674 49937;49938;49939;49940;49941;49942;49943;49944;49945;49946 60421;60422;60423;60424;60425;60426;60427;60428;60429;60430;60431;60432;60433 60432 13 INVYYNEATGNKYVPR Unmodified 1899.9479 0.94791144 2689 Q9BVA1 TUBB2B Tubulin beta-2B chain yes yes 0 0 0 1 By MS/MS By MS/MS 4 3.29 2 1 2 3 2 52.84 52.732 3 9.2013E-47 15097 20211116_3428_TMUAki_TMT10x_P_F1 241.87 220.27 15381000 31488000 188670 17393000 33959000 44204000 23546000 57928000 58268000 45461000 35082000 14322000 29329000 1707700 19141000 32311000 43687000 25503000 57831000 56935000 44913000 34560000 6 6 5 6 6 6 6 6 6 6 6 6528800 13715000 104960 7932500 19511000 32933000 16267000 25224000 25331000 19564000 14785000 6079700 12776000 820920 8874800 18633000 31835000 16951000 25865000 24999000 19341000 14589000 3 3 3 3 3 3 3 3 3 3 3 8852000 17773000 83706 9460900 14448000 11271000 7278600 32704000 32937000 25897000 20297000 8242700 16553000 886740 10266000 13678000 11852000 8552200 31966000 31937000 25573000 19971000 3 3 2 3 3 3 3 3 3 3 3 4938700000 3577600000 1361100000 9326 2689 8675 49947;49948;49949;49950;49951 60434;60435;60436;60437;60438;60439 60434 6 IPAFLNVVDIAGLVK Unmodified 1567.9338 0.93376492 2947 Q9NTK5;Q9NTK5-3 OLA1 Obg-like ATPase 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 1.05 3 4 4 3 7 7 82.197 82.185 2;3 1.5545E-29 27572 20211116_3431_TMUAki_TMT10x_P_F4 202.32 167.93 51362000 82105000 503950 76065000 53001000 74279000 63314000 43856000 44167000 49944000 57794000 47826000 76590000 4356300 77999000 51099000 75097000 63090000 46307000 46254000 48527000 55330000 17 17 9 17 17 17 17 17 17 17 17 31717000 50839000 358700 46125000 29915000 53608000 36168000 27711000 27595000 31481000 35746000 29534000 47420000 2899300 47500000 28861000 53569000 36094000 29594000 28738000 30591000 34231000 9 9 6 9 9 9 9 9 9 9 9 19646000 31266000 145250 29940000 23086000 20671000 27147000 16145000 16572000 18463000 22048000 18292000 29170000 1457000 30499000 22238000 21528000 26996000 16713000 17516000 17936000 21099000 8 8 3 8 8 8 8 8 8 8 8 12950000000 5608200000 7342100000 9327 2947 8676 49952;49953;49954;49955;49956;49957;49958;49959;49960;49961;49962;49963;49964;49965 60440;60441;60442;60443;60444;60445;60446;60447;60448;60449;60450;60451;60452;60453;60454;60455;60456 60447 17 IPAMTIAK Oxidation (M) 859.48372 0.48372479 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 41.864 42.241 2 0.039034 10407 20211116_3447_TMUAki_TMT10x_S_F8 65.235 45.796 2353200 4990300 40427 4888600 4513900 4865400 3043300 3596300 4325600 2995600 4038100 2191300 4656100 252350 4994000 4292900 4929400 3203600 3702500 4334300 2950400 3904300 3 3 1 3 3 3 3 3 3 3 3 1204100 2694000 40427 2709700 3398300 3904700 2018900 1997600 2361000 1621100 2297600 1121500 2513800 168240 2781100 3226300 3861300 2130600 2116000 2384700 1598800 2218300 1 1 1 1 1 1 1 1 1 1 1 1149100 2296400 0 2178900 1115600 960610 1024500 1598600 1964600 1374500 1740500 1069800 2142300 84115 2212900 1066700 1068100 1073000 1586400 1949600 1351600 1686000 2 2 0 2 2 2 2 2 2 2 2 202550000 89811000 112740000 9328 613 8677 49966;49967;49968 60457 60457 608 1 IPASQTSVPFDHLGK Unmodified 1595.8308 0.83075641 1110 P49674 CSNK1E Casein kinase I isoform epsilon yes yes 0 0 0 0 By MS/MS 7 0 1 1 52.722 53.431 3 0.00028648 16682 20211116_3435_TMUAki_TMT10x_P_F7 70.529 46.924 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9329 1110 8678 49969 60458 60458 1 IPAYFVTVSDPAVPPGEDPDGR Unmodified 2298.1168 0.11682726 820 P26640 VARS Valine--tRNA ligase yes yes 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 77.162 77.16 3 8.4803E-08 25781 20211116_3433_TMUAki_TMT10x_P_F5 96.379 85.433 2121300 3331400 68231 2893600 2002200 3619900 2313000 2077200 2310900 2207500 2341000 1975700 3107000 237790 2993800 1931800 3608300 2329900 2193700 2352100 2150600 2257400 1 1 1 1 1 1 1 1 1 1 1 2121300 3331400 68231 2893600 2002200 3619900 2313000 2077200 2310900 2207500 2341000 1975700 3107000 237790 2993800 1931800 3608300 2329900 2193700 2352100 2150600 2257400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 839950000 839950000 0 9330 820 8679 49970;49971 60459 60459 1 IPCVDAGLISPLVQLLNSK Unmodified 2036.134 0.13399765 1175 P52306;P52306-4;P52306-5;P52306-6;P52306-2;P52306-3 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 82.596 82.604 3 2.5443E-33 27757 20211116_3431_TMUAki_TMT10x_P_F4 199.08 186.28 5219100 8632600 33764 9170400 5677700 7317100 6158100 4789300 4135200 4882500 7966100 4859500 8057200 436010 9289600 5455900 7511600 6158700 4999800 4431300 4764600 7566000 3 3 1 3 3 3 3 3 3 3 3 2544300 3855200 0 4496400 2335900 4065800 2389700 1964200 1617200 2192200 3374500 2368800 3599700 187360 4535300 2239800 4121300 2397300 2109900 1741400 2131600 3200800 1 1 0 1 1 1 1 1 1 1 1 2674900 4777500 33764 4674000 3341700 3251300 3768400 2825200 2518000 2690300 4591600 2490700 4457500 248640 4754300 3216100 3390400 3761400 2889900 2689900 2633000 4365100 2 2 1 2 2 2 2 2 2 2 2 585270000 349870000 235400000 9331 1175 8680 49972;49973 60460;60461;60462 60460 3 IPDIVLWPTCHDDVVK Unmodified 1905.9659 0.96586969 61 O00116 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal yes yes 0 0 0 0 By MS/MS 6 0 1 1 76.5 76.462 3 0.094738 24296 20211116_3434_TMUAki_TMT10x_P_F6 31.514 6.1929 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9332 61 8681 49974 60463 60463 1 IPDQLVILDMK Oxidation (M) 1299.7108 0.7108242 1117 P49755 TMED10 Transmembrane emp24 domain-containing protein 10 yes yes 0 0 1 0 By MS/MS By MS/MS 6 0 2 1 1 72.481 72.397 3 0.01323 23049 20211116_3445_TMUAki_TMT10x_S_F6 57.802 40.476 5377900 9342800 2157.1 8751500 6995600 6036800 6580600 6600200 6868800 7130100 7155300 5006700 8715600 395090 8929100 6692500 6330000 6705600 6698000 6985400 6941800 6893600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5377900 9342800 2157.1 8751500 6995600 6036800 6580600 6600200 6868800 7130100 7155300 5006700 8715600 395090 8929100 6692500 6330000 6705600 6698000 6985400 6941800 6893600 2 2 1 2 2 2 2 2 2 2 2 357640000 0 357640000 9333 1117 8682 49975;49976 60464;60465;60466 60465 1482 3 IPDWFLNR Unmodified 1059.5502 0.55016488 1345 P62269 RPS18 40S ribosomal protein S18 yes yes 0 0 0 0 By MS/MS By MS/MS 4.14 3.09 2 2 1 2 4 3 74.78 74.71 2 0.00041897 25598 20211116_3429_TMUAki_TMT10x_P_F2 143.85 94.43 36892000 63723000 211030 61066000 46474000 46672000 44972000 26322000 22533000 27594000 43109000 34351000 59451000 3359400 62270000 44534000 47977000 45001000 27827000 24635000 26897000 40949000 8 8 5 8 8 8 8 8 8 8 8 17392000 29309000 33982 28187000 23727000 29483000 24596000 11256000 9505100 11996000 19553000 16194000 27344000 1538500 28854000 22773000 29546000 24436000 12387000 10687000 11686000 18551000 3 3 1 3 3 3 3 3 3 3 3 19500000 34414000 177050 32879000 22747000 17189000 20377000 15065000 13028000 15597000 23556000 18157000 32107000 1820900 33416000 21761000 18431000 20565000 15440000 13949000 15211000 22397000 5 5 4 5 5 5 5 5 5 5 5 8357300000 4907800000 3449500000 9334 1345 8683 49977;49978;49979;49980;49981;49982;49983 60467;60468;60469;60470;60471;60472;60473;60474;60475 60468 9 IPEGLFDPSNVK Unmodified 1314.682 0.68196691 459 O96019;O96019-2;O94805 ACTL6A;ACTL6B Actin-like protein 6A;Actin-like protein 6B yes no 0 0 0 0 By MS/MS 6 0 1 1 71.507 71.451 3 0.011512 22262 20211116_3434_TMUAki_TMT10x_P_F6 62.14 37.349 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9335 459 8684 49984 60476 60476 1 IPENSEFPFVSLKEPR Unmodified 1887.9731 0.97306355 2005 Q6PCB5;Q6PCB5-2 RSBN1L Round spermatid basic protein 1-like protein yes no 0 0 0 1 By MS/MS 7 0 1 1 67.245 67.776 3 0.067004 22594 20211116_3435_TMUAki_TMT10x_P_F7 36.593 26.671 3557400 6549200 76251 5293000 4416600 8089100 5293000 5313900 4730800 4872100 4997500 3312900 6106400 378030 5530300 4261500 8005800 5305700 5529600 4846800 4776600 4812600 1 1 1 1 1 1 1 1 1 1 1 3557400 6549200 76251 5293000 4416600 8089100 5293000 5313900 4730800 4872100 4997500 3312900 6106400 378030 5530300 4261500 8005800 5305700 5529600 4846800 4776600 4812600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 562330000 562330000 0 9336 2005 8685 49985 60477 60477 1 IPEQSVLLLHACAHNPTGVDPRPEQWK Unmodified 3091.5662 0.56617265 471 P00505;P00505-2 GOT2 Aspartate aminotransferase, mitochondrial yes no 0 0 0 1 By MS/MS 8 0 1 1 58.389 58.56 5 6.0119E-09 17572 20211116_3436_TMUAki_TMT10x_P_F8 95.794 87.721 14296000 24195000 364510 26009000 21781000 26836000 19993000 12873000 12632000 12257000 16445000 13313000 22584000 1629800 26418000 20862000 26974000 20146000 13775000 13308000 11996000 15746000 3 3 3 3 3 3 3 3 3 3 3 14296000 24195000 364510 26009000 21781000 26836000 19993000 12873000 12632000 12257000 16445000 13313000 22584000 1629800 26418000 20862000 26974000 20146000 13775000 13308000 11996000 15746000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1378300000 1378300000 0 9337 471 8686 49986 60478;60479;60480 60478 3 IPETYPFNPPK Unmodified 1301.6656 0.66558856 1293 P61086;P61086-3 UBE2K Ubiquitin-conjugating enzyme E2 K yes no 0 0 0 0 By MS/MS By MS/MS 7 0 3 2 1 60.393 61.04 2;3 2.8639E-05 20346 20211116_3446_TMUAki_TMT10x_S_F7 105.52 76.173 16131000 26725000 137910 28362000 22031000 29022000 19689000 20001000 20055000 19336000 21524000 15020000 24943000 1506800 28828000 21071000 29322000 20105000 20771000 20438000 18912000 20718000 5 5 3 5 5 5 5 5 5 5 5 11754000 19257000 109540 20861000 17823000 25298000 15439000 14160000 14493000 14042000 15753000 10944000 17975000 1145400 21235000 17035000 25248000 15756000 14955000 14830000 13719000 15158000 3 3 2 3 3 3 3 3 3 3 3 4377400 7467100 28373 7501400 4208300 3724200 4249600 5841200 5561800 5294200 5770900 4075800 6967700 361450 7593800 4036200 4074500 4349000 5815700 5608200 5193100 5560500 2 2 1 2 2 2 2 2 2 2 2 1596800000 1258100000 338690000 9338 1293 8687 49987;49988;49989 60481;60482;60483;60484;60485 60484 5 IPFADALDLFR Unmodified 1276.6816 0.68157298 1109 P49643 PRIM2 DNA primase large subunit yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 81.279 81.284 2 2.7635E-05 26304 20211116_3447_TMUAki_TMT10x_S_F8 106.16 66.063 40453000 69944000 1569200 68817000 43435000 45173000 50005000 19588000 17995000 22631000 43201000 37678000 65261000 4858000 69931000 41908000 46903000 49388000 21298000 20602000 21977000 40894000 6 6 6 6 6 6 6 6 6 6 6 19411000 32881000 583990 33641000 16988000 25867000 21874000 10608000 9136800 12165000 21733000 18078000 30684000 2119600 34149000 16447000 26488000 21538000 11603000 10299000 11817000 20575000 3 3 3 3 3 3 3 3 3 3 3 21042000 37063000 985180 35176000 26447000 19306000 28130000 8979800 8858400 10466000 21468000 19600000 34577000 2738400 35782000 25461000 20415000 27849000 9695700 10303000 10161000 20319000 3 3 3 3 3 3 3 3 3 3 3 2847000000 1853800000 993150000 9339 1109 8688 49990;49991;49992;49993;49994;49995 60486;60487;60488;60489;60490 60490 5 IPGEETDTIQHMR Oxidation (M) 1541.7144 0.71440603 1135 P50416;P50416-2 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform yes no 0 0 1 0 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 33.123 32.969 3 9.7802E-10 8683 20211116_3429_TMUAki_TMT10x_P_F2 136.24 123.24 629360 926340 6390.5 1037800 1130100 984820 698690 635880 761350 589240 830420 586040 864790 64970 1050000 1073100 998700 733200 662740 774260 577400 798940 2 2 1 2 2 2 2 2 2 2 2 403800 596760 6390.5 606330 914770 784240 485280 407470 470060 370430 503650 376020 556880 46590 620540 866710 779490 514230 432190 480060 363300 484820 1 1 1 1 1 1 1 1 1 1 1 225560 329580 0 431430 215280 200580 213400 228420 291300 218810 326770 210020 307910 18381 429490 206360 219200 218970 230550 294200 214100 314120 1 1 0 1 1 1 1 1 1 1 1 129740000 104290000 25456000 9340 1135 8689 49996;49997;49998 60491;60492 60491 1499 2 IPGGIIEDSCVLR Unmodified 1427.7442 0.74424959 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 By MS/MS By MS/MS 4.35 1.23 1 4 4 4 4 9 8 64.192 64.099 2;3 5.1382E-25 19206 20211116_3444_TMUAki_TMT10x_S_F5 219.72 159.81 85861000 138310000 411890 138990000 92772000 112610000 92632000 75441000 74672000 78031000 99719000 79946000 129060000 6769100 141350000 88956000 115520000 93412000 78657000 77641000 76103000 95420000 21 21 9 21 21 21 21 21 21 21 21 48072000 72226000 98258 74011000 48594000 77850000 51766000 38558000 39019000 40469000 52423000 44759000 67401000 3328500 75435000 46665000 78189000 51948000 41243000 40729000 39445000 50155000 11 11 5 11 11 11 11 11 11 11 11 37789000 66087000 313630 64980000 44179000 34765000 40866000 36883000 35653000 37562000 47296000 35187000 61662000 3440600 65916000 42291000 37327000 41464000 37413000 36912000 36657000 45264000 10 10 4 10 10 10 10 10 10 10 10 26270000000 13668000000 12603000000 9341 1094 8690 49999;50000;50001;50002;50003;50004;50005;50006;50007;50008;50009;50010;50011;50012;50013;50014;50015 60493;60494;60495;60496;60497;60498;60499;60500;60501;60502;60503;60504;60505;60506;60507;60508;60509;60510;60511;60512;60513;60514;60515 60511 23 IPGIIIAASAVR Unmodified 1179.7339 0.7339429 912 P33992 MCM5 DNA replication licensing factor MCM5 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 71.674 71.72 2 0.00022999 23291 20211116_3431_TMUAki_TMT10x_P_F4 94.692 69.393 20892000 34083000 404820 33479000 24898000 34835000 24770000 24142000 21696000 23815000 27891000 19454000 31801000 2043900 34217000 23887000 35163000 25037000 25076000 22426000 23273000 26713000 5 5 4 5 5 5 5 5 5 5 5 12394000 18446000 230070 18796000 14637000 25661000 15177000 13686000 12120000 13622000 16011000 11541000 17214000 1151800 19253000 14054000 25449000 15272000 14517000 12602000 13307000 15325000 3 3 2 3 3 3 3 3 3 3 3 8497200 15637000 174750 14683000 10261000 9174100 9592600 10456000 9575900 10193000 11879000 7913000 14587000 892030 14964000 9832300 9714600 9764600 10558000 9824300 9966000 11388000 2 2 2 2 2 2 2 2 2 2 2 1480400000 927410000 553020000 9342 912 8691 50016;50017;50018;50019 60516;60517;60518;60519;60520;60521 60516 6 IPGIYGR Unmodified 774.43882 0.43882351 2946 Q9NTJ3;Q9NTJ3-2 SMC4 Structural maintenance of chromosomes protein 4 yes no 0 0 0 0 By MS/MS 1 0 1 1 45.679 45.679 2 0.019407 12296 20211116_3428_TMUAki_TMT10x_P_F1 88.627 31.155 1503100 2209900 1163.7 2509100 2861100 2844500 1785900 1636400 1753400 1525500 1956800 1399600 2063200 144720 2543600 2716400 2849900 1866700 1721400 1792400 1494400 1881400 1 1 1 1 1 1 1 1 1 1 1 1503100 2209900 1163.7 2509100 2861100 2844500 1785900 1636400 1753400 1525500 1956800 1399600 2063200 144720 2543600 2716400 2849900 1866700 1721400 1792400 1494400 1881400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 176440000 176440000 0 9343 2946 8692 50020 60522 60522 1 IPGLLSPHPLLQLSYTATDR Unmodified 2191.2001 0.20010338 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 76.372 76.361 3 3.0039E-10 25638 20211116_3442_TMUAki_TMT10x_S_F4 120.71 104.4 11790000 20555000 81900 17691000 11166000 18777000 12453000 11661000 11985000 12811000 13286000 10977000 19170000 951870 18266000 10738000 18902000 12550000 12250000 12259000 12464000 12776000 3 3 2 3 3 3 3 3 3 3 3 5947100 10309000 0 8619100 4364600 11396000 6294900 5769700 6488200 6586900 6643400 5536600 9613200 377720 8953800 4227500 11312000 6290200 6174700 6597600 6399400 6403900 1 1 0 1 1 1 1 1 1 1 1 5842700 10246000 81900 9071900 6801200 7380900 6158400 5891700 5496600 6224000 6642500 5440700 9556500 574150 9312500 6510100 7590000 6259900 6075400 5661500 6065000 6372300 2 2 2 2 2 2 2 2 2 2 2 2293800000 1286700000 1007100000 9344 1092 8693 50021;50022;50023 60523;60524;60525 60524 3 IPGSPPESMGR Oxidation (M) 1142.539 0.53900784 1133 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 1 0 By MS/MS 5 0 1 1 32.315 32.479 2 0.077989 6531 20211116_3444_TMUAki_TMT10x_S_F5 54.066 24.904 49644 79516 0 93446 39811 29712 39125 30133 35187 28341 66711 46223 74249 0 93394 38156 34209 39600 30562 37088 27753 63378 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 49644 79516 0 93446 39811 29712 39125 30133 35187 28341 66711 46223 74249 0 93394 38156 34209 39600 30562 37088 27753 63378 1 1 0 1 1 1 1 1 1 1 1 4520500 0 4520500 9345 1133 8694 50024 60526 60526 1491 1 IPHGVSGVQDR Unmodified 1163.6047 0.60471964 2617 Q9BPU6 DPYSL5 Dihydropyrimidinase-related protein 5 yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 31.516 31.499 3 0.00045795 6959 20211116_3431_TMUAki_TMT10x_P_F4 81.642 67.647 1112600 1663500 7764.4 1733000 1852400 1890500 1193700 960890 1024200 951410 1421400 1036000 1552400 109840 1765400 1760100 1895300 1240000 1023600 1063500 929590 1358900 2 2 2 2 2 2 2 2 2 2 2 1112600 1663500 7764.4 1733000 1852400 1890500 1193700 960890 1024200 951410 1421400 1036000 1552400 109840 1765400 1760100 1895300 1240000 1023600 1063500 929590 1358900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 63692000 63692000 0 9346 2617 8695 50025;50026 60527;60528 60527 2 IPIFSAAGLPHNEIAAQICR Unmodified 2177.1415 0.14154264 753 P21281;P15313 ATP6V1B2;ATP6V1B1 V-type proton ATPase subunit B, brain isoform;V-type proton ATPase subunit B, kidney isoform yes no 0 0 0 0 By matching By MS/MS 2.33 0.471 2 1 1 2 70.609 70.322 3 2.9706E-18 22597 20211116_3440_TMUAki_TMT10x_S_F2 147.06 136.69 7520200 14781000 115290 15696000 11545000 9810700 9708400 8413800 7382800 7966800 11235000 7002900 13796000 485060 15860000 11031000 10326000 9871700 8611700 7749200 7799200 10718000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7520200 14781000 115290 15696000 11545000 9810700 9708400 8413800 7382800 7966800 11235000 7002900 13796000 485060 15860000 11031000 10326000 9871700 8611700 7749200 7799200 10718000 3 3 2 3 3 3 3 3 3 3 3 2457300000 707530000 1749800000 9347 753 8696 50027;50028;50029 60529;60530;60531 60529 3 IPILLIQQPGK Unmodified 1218.77 0.76999406 2585 Q99575 POP1 Ribonucleases P/MRP protein subunit POP1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 76.119 76.142 3 0.00075433 25103 20211116_3431_TMUAki_TMT10x_P_F4 79.974 60.361 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9348 2585 8697 50030 60532 60532 1 IPLGLDLK Unmodified 867.54295 0.54295423 2151 Q8IX01;Q8IX01-4;Q8IX01-3 SUGP2 SURP and G-patch domain-containing protein 2 yes no 0 0 0 0 By MS/MS 7 0 1 1 68.854 69.342 2 0.080122 23268 20211116_3435_TMUAki_TMT10x_P_F7 60.074 27.768 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9349 2151 8698 50031 60533 60533 1 IPLNPYLNLHSLLPASNLAGK Unmodified 2244.263 0.26303798 2163 Q8IY67-2 RAVER1 Ribonucleoprotein PTB-binding 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 78.35 78.33 3 6.9917E-11 25076 20211116_3434_TMUAki_TMT10x_P_F6 118.46 108.98 5230300 8829600 178740 8614100 5721500 7173000 6275700 5353700 4720100 5354900 6704900 4871200 8238100 607090 8781500 5510800 7355400 6288600 5535100 4940400 5229800 6406500 2 2 2 2 2 2 2 2 2 2 2 3314700 5536800 130460 5301300 3044700 5175900 3848100 3591600 2981400 3217700 4252500 3087300 5165500 392620 5423000 2947500 5245000 3834500 3720500 3116100 3158000 4062900 1 1 1 1 1 1 1 1 1 1 1 1915600 3292800 48282 3312800 2676800 1997100 2427600 1762000 1738700 2137200 2452400 1783900 3072600 214470 3358500 2563300 2110400 2454100 1814600 1824300 2071800 2343600 1 1 1 1 1 1 1 1 1 1 1 1663700000 840720000 822980000 9350 2163 8699 50032;50033 60534;60535 60534 2 IPLPAGYREEIVR Unmodified 1511.846 0.84601255 1073 P48449;P48449-2;P48449-3 LSS Lanosterol synthase yes no 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 51.323 51.745 3 0.00035996 16036 20211116_3435_TMUAki_TMT10x_P_F7 81.877 61.771 5204500 8758600 40280 8837900 6395000 7642500 5709600 7108000 6532000 6508600 7117900 4846200 8173000 485710 8992600 6117000 7847400 5852800 7236000 6630000 6381300 6848300 2 2 2 2 2 2 2 2 2 2 2 2534700 4034800 8787.4 3994800 3621400 5070300 3301100 3583300 3194600 3160700 3616400 2360100 3764700 233550 4094200 3464800 5065500 3361900 3705700 3269600 3104300 3475500 1 1 1 1 1 1 1 1 1 1 1 2669900 4723800 31493 4843100 2773600 2572200 2408500 3524700 3337400 3347900 3501600 2486200 4408300 252160 4898400 2652200 2781800 2490900 3530300 3360400 3277000 3372700 1 1 1 1 1 1 1 1 1 1 1 699600000 409910000 289690000 9351 1073 8700 50034;50035;50036 60536;60537 60536 2 IPNIYAIGDVVAGPMLAHK Oxidation (M) 1994.0659 0.065918081 582 P09622;P09622-3;P09622-2 DLD Dihydrolipoyl dehydrogenase, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 2 0 3 1 2 76.082 76.011 3;4 1.899E-06 26119 20211116_3429_TMUAki_TMT10x_P_F2 94.384 77.103 9412700 16623000 9621.5 14809000 10221000 13461000 10695000 8938400 9300900 10071000 10986000 8763200 15505000 666270 15215000 9804100 13694000 10780000 9350100 9582900 9789000 10546000 4 4 1 4 4 4 4 4 4 4 4 4014100 6812400 0 6466700 3225900 6063300 3458400 3573100 3849000 4296000 4417500 3736800 6355400 225850 6615400 3092800 6145800 3507900 3780200 3918700 4165900 4243800 1 1 0 1 1 1 1 1 1 1 1 5398600 9811100 9621.5 8341900 6995100 7397500 7236300 5365300 5452000 5774700 6568700 5026400 9149300 440430 8599800 6711400 7548600 7272300 5569900 5664200 5623000 6302000 3 3 1 3 3 3 3 3 3 3 3 3760500000 1503400000 2257000000 9352 582 8701 50037;50038;50039 60538;60539;60540;60541 60538 549 4 IPNIYAIGDVVAGPMLAHK Unmodified 1978.071 0.071003459 582 P09622;P09622-3;P09622-2 DLD Dihydrolipoyl dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 78.715 78.638 3 1.2218E-12 28706 20211116_3441_TMUAki_TMT10x_S_F3 134.21 112.68 11185000 16137000 281880 17032000 8162700 12008000 10682000 6533400 6191700 7211400 10525000 10417000 15061000 1147700 17237000 7907200 12420000 10564000 6939300 6649300 7015100 10019000 3 3 3 3 3 3 3 3 3 3 3 8122800 11721000 160860 12105000 5060300 8654400 6825300 4580000 4409800 5183600 7353300 7564300 10938000 780460 12270000 4906100 8937800 6756100 4880300 4696300 5037700 7002300 2 2 2 2 2 2 2 2 2 2 2 3062400 4415800 121010 4927300 3102400 3353300 3856400 1953500 1782000 2027800 3171500 2852300 4122400 367230 4967000 3001000 3481700 3808000 2059000 1953000 1977400 3016400 1 1 1 1 1 1 1 1 1 1 1 2434600000 1120100000 1314500000 9353 582 8701 50040;50041 60542;60543;60544 60544 3 IPPPVIMVQNVSFK Oxidation (M) 1583.8745 0.87453548 3106 Q9UG63;Q9UG63-2 ABCF2 ATP-binding cassette sub-family F member 2 yes no 0 0 1 0 By MS/MS By MS/MS 3 0 2 1 1 72.233 71.936 3 0.00014983 25050 20211116_3430_TMUAki_TMT10x_P_F3 82.543 68.58 5561300 9593400 94927 8714900 7208200 8667800 6526300 8073700 7528400 7678500 8086800 5178800 8948400 572600 8951900 6900100 8819700 6686600 8226900 7634800 7515500 7783800 3 3 3 3 3 3 3 3 3 3 3 2270500 3847600 37484 3566500 2817700 4785200 2662800 3309000 2783600 2994500 3282000 2114300 3589200 230840 3676500 2700100 4766500 2712800 3429500 2844200 2937600 3150600 1 1 1 1 1 1 1 1 1 1 1 3290800 5745800 57444 5148300 4390500 3882600 3863500 4764600 4744800 4684000 4804800 3064400 5359200 341760 5275400 4200100 4053200 3973800 4797400 4790600 4578000 4633200 2 2 2 2 2 2 2 2 2 2 2 473750000 221760000 251990000 9354 3106 8702 50042;50043 60545;60546;60547 60545 3135 3 IPPSSAPTVLSVPAGTTIVK Unmodified 1934.1088 0.10882875 1160 P51610;P51610-2;P51610-4 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 2 4 5 1 43.689 43.586 3 4.4057E-09 23228 20211116_3429_TMUAki_TMT10x_P_F2 108.71 85.078 11347000 18926000 70328 17605000 12337000 15854000 13417000 11257000 11244000 12240000 14323000 10565000 17655000 874350 18027000 11851000 16156000 13486000 11707000 11643000 11914000 13722000 6 6 3 6 6 6 6 6 6 6 6 4245800 6493600 70328 5733700 4468900 8507000 5335100 4529600 4205800 4369100 4910800 3953700 6056400 418310 5944400 4311000 8405900 5331400 4801300 4353100 4273700 4715500 4 4 3 4 4 4 4 4 4 4 4 7101400 12432000 0 11871000 7867600 7347200 8082300 6727300 7038000 7871300 9412300 6610900 11598000 456050 12083000 7539900 7750000 8154700 6905400 7289900 7640400 9006200 2 2 0 2 2 2 2 2 2 2 2 1209600000 698890000 510690000 9355 1160 8703 50044;50045;50046;50047;50048;50049 60548;60549;60550;60551;60552;60553;60554 60548 7 IPPVAVR Unmodified 750.47521 0.47520902 1735 Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 0 0 By MS/MS By MS/MS 3 2.83 2 1 1 2 38.893 39.074 2 0.014583 11106 20211116_3446_TMUAki_TMT10x_S_F7 93.763 51.945 4413700 7085300 142590 7299800 4693800 3881300 5020400 4533600 4477900 4329200 5780400 4110700 6612200 500070 7380700 4517500 4179500 5058600 4570400 4625400 4236600 5535800 5 5 4 5 5 5 5 5 5 5 5 28144 42048 0 41507 52467 67399 16173 40978 29704 29586 23010 26205 39233 0 42770 49395 66471 18722 42656 29389 29365 22404 1 1 0 1 1 1 1 1 1 1 1 4385600 7043300 142590 7258200 4641300 3813900 5004300 4492600 4448100 4299600 5757400 4084500 6572900 500070 7337900 4468100 4113100 5039800 4527700 4596000 4207200 5513400 4 4 4 4 4 4 4 4 4 4 4 154900000 59407000 95494000 9356 1735 8704 50050;50051;50052 60555;60556;60557;60558 60558 4 IPQSHIQQICETILTSGENLAR Unmodified 2507.2802 0.28022097 247 O43813 LANCL1 LanC-like protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 73.877 73.812 3 9.7132E-27 23811 20211116_3436_TMUAki_TMT10x_P_F8 167.51 154.08 7078300 12711000 7511.1 12023000 8442800 10390000 8554700 8393900 8579200 8510600 9949900 6590100 11858000 549320 12289000 8094500 10640000 8672300 8638600 8775500 8307100 9555800 6 6 2 6 6 6 6 6 6 6 6 2350000 4309100 4304.8 3587900 2617900 4881000 2941500 2885900 3216500 3113100 3332000 2188000 4018100 198090 3730500 2518300 4847800 2975300 3041700 3264300 3031000 3210700 2 2 1 2 2 2 2 2 2 2 2 4728300 8401700 3206.3 8434700 5824900 5508900 5613200 5508000 5362700 5397600 6617800 4402100 7839800 351230 8558700 5576200 5792600 5697000 5596900 5511200 5276100 6345100 4 4 1 4 4 4 4 4 4 4 4 3217700000 1007900000 2209800000 9357 247 8705 50053;50054;50055 60559;60560;60561;60562;60563;60564 60559 6 IPSAVGYQPTLATDMGTMQER 2 Oxidation (M) 2297.0668 0.066782296 518 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 2 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 54.802 54.889 2;3 0.0068115 15446 20211116_3434_TMUAki_TMT10x_P_F6 48.836 43.922 1425800 2056000 0 2290300 1643100 3102000 1592000 1650600 1686700 1721400 1406100 1327200 1919300 79388 2332100 1571500 3077400 1620400 1753600 1701800 1678300 1365100 1 1 0 1 1 1 1 1 1 1 1 1425800 2056000 0 2290300 1643100 3102000 1592000 1650600 1686700 1721400 1406100 1327200 1919300 79388 2332100 1571500 3077400 1620400 1753600 1701800 1678300 1365100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1500800000 1500800000 0 9358 518 8706 50056;50057 60565;60566 60565 424;425 2 IPSAVGYQPTLATDMGTMQER Oxidation (M) 2281.0719 0.071867674 518 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 5.5 0.764 1 1 4 3 3 59.732 59.793 3 1.804E-08 18293 20211116_3434_TMUAki_TMT10x_P_F6 101.05 87.149 10186000 17975000 101940 16564000 12492000 15325000 10733000 15433000 13522000 14572000 14394000 9484400 16768000 847700 16979000 11932000 15691000 11065000 15660000 13665000 14267000 13858000 7 7 4 7 7 7 7 7 7 7 7 4132500 6728300 19750 6516500 5095800 9031200 4943200 6001900 5479600 6028600 5219700 3847600 6277400 337740 6700500 4881100 8977200 5038700 6256000 5541900 5886700 5043300 3 3 2 3 3 3 3 3 3 3 3 6054000 11247000 82186 10047000 7395900 6293700 5789700 9431400 8042200 8543200 9174400 5636800 10490000 509950 10278000 7050500 6713600 6026400 9404200 8123200 8380300 8815200 4 4 2 4 4 4 4 4 4 4 4 4768300000 1998200000 2770100000 9359 518 8706 50058;50059;50060;50061;50062;50063 60567;60568;60569;60570;60571;60572;60573 60569 424;425 7 IPSAVGYQPTLATDMGTMQER Unmodified 2265.077 0.076953052 518 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 67.028 67.301 3 2.4152E-12 20914 20211116_3445_TMUAki_TMT10x_S_F6 119.38 100.17 2307400 3907500 0 3648600 2381200 4528400 2880600 2668600 2411500 2637500 2933200 2148200 3645100 168510 3753600 2294200 4517200 2881300 2806200 2492300 2577200 2813400 2 2 0 2 2 2 2 2 2 2 2 2307400 3907500 0 3648600 2381200 4528400 2880600 2668600 2411500 2637500 2933200 2148200 3645100 168510 3753600 2294200 4517200 2881300 2806200 2492300 2577200 2813400 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2161200000 2161200000 0 9360 518 8706 50064;50065;50066 60574;60575;60576 60576 3 IPTHLFTFIQFKK Unmodified 1618.9235 0.92353459 602 P10155;P10155-5;P10155-3;P10155-4;P10155-2 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 72.222 72.159 4 1.2756E-14 23147 20211116_3436_TMUAki_TMT10x_P_F8 162.49 152.02 15510000 25714000 303900 23301000 17095000 27138000 18908000 17644000 13750000 18707000 16499000 14444000 23985000 1568200 23999000 16454000 27197000 18925000 18451000 14312000 18227000 15831000 5 5 4 5 5 5 5 5 5 5 5 9578500 15479000 213690 14459000 10871000 20335000 11960000 11228000 8551700 11854000 9705100 8920100 14440000 1011400 14910000 10464000 20149000 11969000 11895000 8890000 11551000 9326500 3 3 3 3 3 3 3 3 3 3 3 5931900 10234000 90209 8842200 6224200 6803000 6948300 6416000 5198500 6853700 6793800 5523600 9544600 556770 9088300 5990200 7047600 6955900 6556000 5421800 6675700 6504300 2 2 1 2 2 2 2 2 2 2 2 1321600000 751940000 569630000 9361 602 8707 50067;50068 60577;60578;60579;60580;60581 60578 5 IPVDTYNNILTVLK Unmodified 1601.9029 0.90285872 2541 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 79.537 79.516 2 4.0158E-10 26292 20211116_3440_TMUAki_TMT10x_S_F2 140.14 113.04 5661600 9696200 116180 11141000 5585500 7250100 6814800 3914000 4113400 4806600 6224300 5272400 9053000 576590 11205000 5393600 7550900 6764600 4174600 4377800 4657600 5939000 2 2 2 2 2 2 2 2 2 2 2 2797000 4894000 115820 5866200 2956100 4379100 3310500 2177900 2094600 2503100 3238700 2605100 4570200 342050 5893500 2850300 4503400 3301800 2335100 2224700 2431300 3088800 1 1 1 1 1 1 1 1 1 1 1 2864600 4802200 358.4 5274800 2629500 2871000 3504300 1736200 2018800 2303500 2985700 2667300 4482700 234540 5311800 2543300 3047500 3462900 1839500 2153100 2226400 2850300 1 1 1 1 1 1 1 1 1 1 1 1799400000 873560000 925790000 9362 2541 8708 50069;50070;50071 60582;60583;60584 60584 3 IPVGPETLGR Unmodified 1037.5869 0.58694431 518 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 0.745 1 2 3 4 2 49.636 49.824 2 1.3029E-08 13376 20211116_3434_TMUAki_TMT10x_P_F6 129.29 96.819 8720400 11583000 0 18527000 12550000 9963300 7771500 8074200 7362700 7273100 8606700 8118400 10834000 641120 18282000 11905000 10636000 8120200 8280700 7552300 7136200 8264100 2 2 0 2 2 2 2 2 2 2 2 3845000 5423900 0 8083100 7185700 6648500 4111700 3606400 3643800 3127400 4098800 3579700 5071000 313630 8036800 6809300 6793100 4316900 3805900 3743500 3074100 3939900 1 1 0 1 1 1 1 1 1 1 1 4875300 6159000 0 10444000 5364400 3314800 3659800 4467800 3718900 4145700 4507900 4538800 5763100 327490 10245000 5095400 3842600 3803200 4474700 3808800 4062100 4324200 1 1 0 1 1 1 1 1 1 1 1 1159100000 706180000 452960000 9363 518 8709 50072;50073;50074;50075;50076;50077 60585;60586;60587;60588;60589;60590 60587 6 IPVHPIGYNDAEILLR Unmodified 1818.9992 0.99921872 3286 Q9Y3Q0 NAALAD2 N-acetylated-alpha-linked acidic dipeptidase 2 yes yes 0 0 0 0 By MS/MS 7 0 1 1 64.957 65.378 3 2.1102E-06 22118 20211116_3446_TMUAki_TMT10x_S_F7 91.789 80.935 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9364 3286 8710 50078 60591 60591 1 IPVHPNDHVNK Unmodified 1268.6626 0.66256887 547 P07954;P07954-2 FH Fumarate hydratase, mitochondrial yes no 0 0 0 0 By MS/MS 5 0 1 1 31.513 31.448 4 6.0295E-05 7275 20211116_3433_TMUAki_TMT10x_P_F5 99.522 77.891 1062300 1615400 4873.6 1465400 1300400 1556800 1107100 717170 786190 814360 1196300 989170 1506800 95951 1506900 1242300 1561500 1123200 774450 828410 791340 1141300 1 1 1 1 1 1 1 1 1 1 1 1062300 1615400 4873.6 1465400 1300400 1556800 1107100 717170 786190 814360 1196300 989170 1506800 95951 1506900 1242300 1561500 1123200 774450 828410 791340 1141300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 56174000 56174000 0 9365 547 8711 50079 60592 60592 1 IPVIIER Unmodified 838.52764 0.52763852 13 Q9GZQ8;A6NCE7;Q9H492;Q9H492-2 MAP1LC3B;MAP1LC3B2;MAP1LC3A Microtubule-associated proteins 1A/1B light chain 3B;Microtubule-associated proteins 1A/1B light chain 3 beta 2;Microtubule-associated proteins 1A/1B light chain 3A yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.957 1 2 2 1 3 3 52.581 52.731 2 0.0047835 14909 20211116_3445_TMUAki_TMT10x_S_F6 111.73 70.875 13755000 20953000 13272 24166000 20939000 20677000 15381000 17392000 17756000 16469000 19186000 12807000 19564000 1174700 24374000 19934000 21206000 15966000 17821000 18011000 16122000 18464000 4 4 1 4 4 4 4 4 4 4 4 6641800 9547100 0 11173000 13762000 14609000 8055200 8473700 8130500 7641300 9056300 6183800 8914600 609360 11335000 13050000 14533000 8471500 8900200 8301000 7497100 8707600 2 2 0 2 2 2 2 2 2 2 2 7113400 11406000 13272 12993000 7177200 6068500 7325500 8918000 9625800 8827600 10130000 6623100 10649000 565320 13039000 6883900 6673300 7494000 8920700 9709800 8625200 9756300 2 2 1 2 2 2 2 2 2 2 2 2403400000 1094800000 1308600000 9366 13 8712 50080;50081;50082;50083;50084;50085 60593;60594;60595;60596;60597;60598 60597 6 IPVSGPFLVK Unmodified 1055.6379 0.63791725 86 O00425 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 3.11 0.737 2 4 3 4 5 69.471 69.219 2;3 4.0251E-05 24977 20211116_3441_TMUAki_TMT10x_S_F3 121.73 80.544 45657000 78767000 578770 76354000 56678000 65095000 54578000 55147000 53026000 56124000 60526000 42514000 73489000 4348600 77895000 54319000 66785000 55422000 56601000 54279000 54773000 58155000 11 11 7 11 11 11 11 11 11 11 11 16436000 27166000 39464 26253000 20797000 33441000 21188000 19847000 19693000 19934000 21839000 15303000 25346000 1405800 26954000 19950000 33319000 21425000 20868000 20176000 19465000 21001000 4 4 2 4 4 4 4 4 4 4 4 29221000 51601000 539310 50101000 35881000 31654000 33390000 35300000 33333000 36190000 38687000 27211000 48143000 2942800 50941000 34370000 33466000 33997000 35733000 34103000 35308000 37154000 7 7 5 7 7 7 7 7 7 7 7 5030100000 2225600000 2804500000 9367 86 8713 50086;50087;50088;50089;50090;50091;50092;50093;50094 60599;60600;60601;60602;60603;60604;60605;60606;60607;60608;60609;60610 60608 12 IPWFQYPIIYDIR Unmodified 1722.9134 0.91336383 2593 Q99623;Q99623-2 PHB2 Prohibitin-2 yes no 0 0 0 0 By MS/MS 5 0 1 1 81.333 81.343 3 0.0046288 26385 20211116_3444_TMUAki_TMT10x_S_F5 61.212 41.889 1311500 2185600 0 1775800 1503100 1299900 1614700 1086100 1325800 1194000 1471800 1221000 2037900 92451 1833400 1442800 1348800 1623100 1118200 1366600 1161700 1415200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1311500 2185600 0 1775800 1503100 1299900 1614700 1086100 1325800 1194000 1471800 1221000 2037900 92451 1833400 1442800 1348800 1623100 1118200 1366600 1161700 1415200 1 1 0 1 1 1 1 1 1 1 1 312380000 0 312380000 9368 2593 8714 50095 60611 60611 1 IPYTTVLR Unmodified 961.55967 0.55966693 1550 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 52.95 52.859 2 0.010922 15468 20211116_3440_TMUAki_TMT10x_S_F2 79.809 39.711 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9369 1550 8715 50096;50097 60612;60613 60613 2 IQAGEIGEMKDGVPEGAQLQGPVHR Oxidation (M) 2631.3075 0.30749835 699 P16989;P16989-3 YBX3 Y-box-binding protein 3 yes no 0 0 1 1 By MS/MS By MS/MS 5 0 2 1 1 45.8 45.948 4 1.5332E-11 11933 20211116_3444_TMUAki_TMT10x_S_F5 109.84 101.75 1407600 2407600 12321 2786200 2774400 3158400 1756800 2799300 2638000 2463200 2371900 1310700 2247900 141880 2821200 2635100 3186500 1862500 2854200 2635700 2419500 2296300 2 2 1 2 2 2 2 2 2 2 2 951010 1455900 0 1788000 2337700 2711200 1380100 1743300 1607900 1515300 1481400 885440 1359700 92818 1814400 2217100 2683300 1457000 1814500 1621300 1489300 1433000 1 1 0 1 1 1 1 1 1 1 1 456610 951700 12321 998160 436740 447170 376720 1056100 1030100 947830 890520 425240 888210 49060 1006800 418000 503220 405490 1039800 1014400 930160 863370 1 1 1 1 1 1 1 1 1 1 1 452360000 313350000 139020000 9370 699 8716 50098;50099 60614 60614 785 1 IQAIAWAR Unmodified 927.52904 0.5290355 709 P17812;P17812-2 CTPS1 CTP synthase 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 54.24 54.065 2 0.0055908 17717 20211116_3430_TMUAki_TMT10x_P_F3 87.435 48.136 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9371 709 8717 50100 60615 60615 1 IQALQQQADEAEDRAQGLQR Unmodified 2267.1254 0.12543488 1413 P67936 TPM4 Tropomyosin alpha-4 chain yes yes 0 0 0 1 By MS/MS 4 0 1 1 54.495 54.653 3 9.1119E-09 16257 20211116_3431_TMUAki_TMT10x_P_F4 102.89 90.377 + 4530200 6379000 25759 7343500 6785900 9087000 5512400 4747700 5625900 4397000 4809800 4218300 5955900 192270 7449500 6476200 9052200 5661600 5035600 5689400 4308800 4665100 2 2 1 2 2 2 2 2 2 2 2 4530200 6379000 25759 7343500 6785900 9087000 5512400 4747700 5625900 4397000 4809800 4218300 5955900 192270 7449500 6476200 9052200 5661600 5035600 5689400 4308800 4665100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 683130000 683130000 0 9372 1413 8718 50101 60616;60617 60616 2 IQAVIDSGVCRR Unmodified 1372.7245 0.7245172 282 O60684;O15131 KPNA6;KPNA5 Importin subunit alpha-7;Importin subunit alpha-6 yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 42.883 42.829 3 0.022133 11364 20211116_3440_TMUAki_TMT10x_S_F2 55.291 33.734 4542100 7511700 289130 8640200 5479800 5361900 4837800 3691500 3716300 3614300 5849400 4231300 7013500 659170 8685700 5255600 5627000 4906000 3835200 3905400 3533100 5576700 3 3 3 3 3 3 3 3 3 3 3 2068000 3536900 160520 4093700 3470700 3443200 2449700 1609600 1608000 1582800 2755100 1926700 3302400 340690 4127200 3311900 3506600 2512200 1728300 1713400 1547000 2622300 1 1 1 1 1 1 1 1 1 1 1 2474200 3974800 128610 4546400 2009100 1918700 2388100 2081900 2108200 2031400 3094300 2304600 3711000 318470 4558500 1943700 2120400 2393800 2107000 2192000 1986100 2954400 2 2 2 2 2 2 2 2 2 2 2 127810000 61237000 66572000 9373 282 8719 50102;50103;50104 60618;60619;60620 60620 3 IQDIVGILR Unmodified 1025.6233 0.62332982 1042 P46087;P46087-2;P46087-4;P46087-3 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 74.621 74.655 2 0.001111 24191 20211116_3436_TMUAki_TMT10x_P_F8 102.55 61.521 161870000 267720000 1740100 250660000 182040000 293930000 196440000 181320000 176670000 178010000 194440000 150730000 249750000 15075000 257570000 175000000 294230000 197900000 189940000 181230000 173990000 187020000 5 5 3 5 5 5 5 5 5 5 5 154570000 255500000 1740100 239000000 173200000 286720000 188610000 173450000 168240000 169980000 185360000 143930000 238350000 14527000 245700000 166560000 286600000 189870000 181960000 172650000 166160000 178280000 4 4 3 4 4 4 4 4 4 4 4 7301600 12214000 0 11656000 8830800 7210200 7838800 7873300 8430700 8032000 9076500 6797800 11395000 548120 11864000 8437300 7634400 8021400 7976400 8573800 7837900 8735800 1 1 0 1 1 1 1 1 1 1 1 2430700000 1567600000 863060000 9374 1042 8720 50105;50106;50107 60621;60622;60623 60622 3 IQDVGLVPMGGVMSGAVPAAAAQEAVEEDIPIAK Unmodified 3332.6996 0.69961417 1189 P52815 MRPL12 39S ribosomal protein L12, mitochondrial yes yes 0 0 0 0 By matching By MS/MS 4 1.41 2 1 1 2 80.574 80.541 4 0.00065472 29461 20211116_3441_TMUAki_TMT10x_S_F3 57.811 45.378 1715500 3093200 65388 3121200 2217200 1865100 2634100 1095700 1113200 1153200 1950000 1597800 2886400 210190 3163400 2140400 1960200 2603000 1154600 1228700 1124000 1855200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1715500 3093200 65388 3121200 2217200 1865100 2634100 1095700 1113200 1153200 1950000 1597800 2886400 210190 3163400 2140400 1960200 2603000 1154600 1228700 1124000 1855200 2 2 2 2 2 2 2 2 2 2 2 1637500000 335330000 1302200000 9375 1189 8721 50108;50109;50110 60624;60625 60624 2 IQEAGTEVVK Unmodified 1072.5764 0.57643921 989 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 3 0 3 2 1 40.488 40.419 2;3 5.4317E-10 13588 20211116_3441_TMUAki_TMT10x_S_F3 195.27 136.35 1705900 2739700 564.39 2593700 2198600 1784700 1953800 1157800 1252600 1227300 2005100 1588100 2555900 122280 2644200 2100300 1854000 1973000 1210900 1331700 1195800 1911000 3 3 1 3 3 3 3 3 3 3 3 697240 991720 564.39 1122200 1044500 924700 764940 373990 420390 419760 755090 649140 925860 55551 1132700 994030 941830 779870 409410 454620 408070 718040 2 2 1 2 2 2 2 2 2 2 2 1008600 1748000 0 1471500 1154100 860010 1188900 783820 832210 807520 1250000 938990 1630000 66726 1511500 1106300 912120 1193100 801490 877070 787690 1192900 1 1 0 1 1 1 1 1 1 1 1 92697000 35469000 57228000 9376 989 8722 50111;50112;50113 60626;60627;60628 60628 3 IQEEILVHIR Unmodified 1248.719 0.71902112 1995 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 0 0 0 0 By MS/MS By matching 4.5 0.5 1 1 1 1 53.599 53.771 3 0.00015278 15946 20211116_3431_TMUAki_TMT10x_P_F4 110.08 92.257 992360 1489500 10945 1663900 1709300 1929900 1299700 941120 851420 975900 1203000 924070 1390500 102520 1689100 1629300 1927400 1325900 1007800 898270 951690 1149600 1 1 1 1 1 1 1 1 1 1 1 992360 1489500 10945 1663900 1709300 1929900 1299700 941120 851420 975900 1203000 924070 1390500 102520 1689100 1629300 1927400 1325900 1007800 898270 951690 1149600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 515390000 395710000 119680000 9377 1995 8723 50114;50115 60629 60629 1 IQEENVIPR Unmodified 1096.5877 0.58767259 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 41.582 41.46 2 0.00020476 13731 20211116_3441_TMUAki_TMT10x_S_F3 134.66 98.473 3179600 5203900 26428 6048300 5323000 4925300 3504600 4788100 5273000 3731300 4753000 2960300 4859000 268810 6093900 5056700 5083800 3704700 4843500 5268500 3687700 4601100 4 4 2 4 4 4 4 4 4 4 4 1424500 2324900 26428 2538700 3519100 3356500 1877200 2166600 2336900 1730400 2103800 1326500 2170200 172060 2587000 3334600 3342200 2004200 2249800 2349000 1707900 2036700 2 2 2 2 2 2 2 2 2 2 2 1755100 2879000 0 3509700 1804000 1568800 1627400 2621600 2936100 2001000 2649200 1633800 2688800 96746 3506900 1722100 1741600 1700500 2593700 2919500 1979800 2564500 2 2 0 2 2 2 2 2 2 2 2 275070000 127040000 148040000 9378 1018 8724 50116;50117;50118;50119 60630;60631;60632;60633 60633 4 IQEGVFDINNEANGIK Unmodified 1759.8741 0.87407779 1287 P61019;P61019-2 RAB2A Ras-related protein Rab-2A yes no 0 0 0 0 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 66.287 66.13 3 2.6233E-05 20104 20211116_3444_TMUAki_TMT10x_S_F5 88.992 70.854 39989000 67620000 176720 67307000 50474000 63739000 47618000 51219000 52486000 47252000 55664000 37233000 63095000 3383000 68633000 48320000 64872000 48601000 52589000 53296000 46312000 53599000 8 8 3 8 8 8 8 8 8 8 8 20885000 35266000 129730 34167000 28037000 46304000 28410000 27393000 28635000 24982000 29766000 19446000 32903000 1890500 35115000 26896000 45998000 28805000 28734000 29161000 24498000 28679000 4 4 2 4 4 4 4 4 4 4 4 19104000 32354000 46990 33140000 22437000 17435000 19208000 23826000 23852000 22270000 25898000 17787000 30192000 1492500 33517000 21424000 18874000 19796000 23856000 24135000 21814000 24920000 4 4 1 4 4 4 4 4 4 4 4 3907800000 1486000000 2421800000 9379 1287 8725 50120;50121;50122;50123;50124 60634;60635;60636;60637;60638;60639;60640;60641 60641 8 IQEIIEQLDVTTSEYEK Unmodified 2037.0154 0.015381878 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 2.89 1.37 6 10 12 4 4 2 17 21 70.194 70.164 2;3;4 6.3975E-81 28050 20211116_3429_TMUAki_TMT10x_P_F2 330.9 256.74 258150000 446610000 1272200 363630000 319120000 401360000 311160000 237070000 245480000 279520000 327170000 240350000 416430000 20185000 377390000 305690000 402860000 314010000 250600000 255510000 271240000 313080000 48 48 24 48 48 48 48 48 48 48 48 136600000 227120000 680420 178700000 134430000 252030000 143500000 125200000 129930000 144950000 167170000 127180000 211750000 10336000 186820000 129060000 249380000 144660000 134290000 134090000 140750000 160110000 20 20 11 20 20 20 20 20 20 20 20 121550000 219490000 591740 184940000 184690000 149320000 167660000 111870000 115560000 134570000 160000000 113170000 204680000 9848600 190570000 176630000 153480000 169350000 116310000 121420000 130490000 152970000 28 28 13 28 28 28 28 28 28 28 28 68160000000 42287000000 25873000000 9380 613 8726 50125;50126;50127;50128;50129;50130;50131;50132;50133;50134;50135;50136;50137;50138;50139;50140;50141;50142;50143;50144;50145;50146;50147;50148;50149;50150;50151;50152;50153;50154;50155;50156;50157;50158;50159;50160;50161;50162 60642;60643;60644;60645;60646;60647;60648;60649;60650;60651;60652;60653;60654;60655;60656;60657;60658;60659;60660;60661;60662;60663;60664;60665;60666;60667;60668;60669;60670;60671;60672;60673;60674;60675;60676;60677;60678;60679;60680;60681;60682;60683;60684;60685;60686;60687;60688;60689;60690;60691;60692;60693;60694;60695 60646 54 IQELEDLLAK Unmodified 1170.6496 0.64960415 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.95 1.65 1 4 4 4 3 4 1 12 9 75.796 75.773 2;3 1.1709E-18 26163 20211116_3440_TMUAki_TMT10x_S_F2 241.13 91.31 147030000 242260000 1166600 267750000 187840000 235600000 165720000 192150000 210150000 205060000 206330000 136900000 226150000 12862000 270860000 179560000 241020000 170630000 197950000 211710000 199740000 199160000 18 18 11 18 18 18 18 18 18 18 18 77870000 125350000 505440 138470000 120310000 170720000 101240000 99288000 108840000 108900000 105350000 72502000 117010000 6762300 140820000 114860000 170330000 103930000 104840000 110270000 105970000 101730000 10 10 6 10 10 10 10 10 10 10 10 69164000 116910000 661210 129270000 67527000 64882000 64477000 92866000 101300000 96152000 100980000 64401000 109140000 6099300 130040000 64697000 70698000 66701000 93105000 101440000 93772000 97425000 8 8 5 8 8 8 8 8 8 8 8 23451000000 13219000000 10232000000 9381 748 8727 50163;50164;50165;50166;50167;50168;50169;50170;50171;50172;50173;50174;50175;50176;50177;50178;50179;50180;50181;50182;50183 60696;60697;60698;60699;60700;60701;60702;60703;60704;60705;60706;60707;60708;60709;60710;60711;60712;60713;60714;60715;60716;60717 60708 22 IQELENLPGSLAGDLR Unmodified 1723.9105 0.9104633 1154 P51532-5;P51532-2;P51532-3;P51532-4;P51532 SMARCA4 Transcription activator BRG1 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 78.012 77.978 2 2.108E-21 28393 20211116_3441_TMUAki_TMT10x_S_F3 149.32 96.745 3269400 5247900 0 4425400 3442500 5129400 4079400 2403100 2342000 2588300 3537800 3043900 4893800 241150 4583300 3314700 5120800 4050900 2586500 2501000 2520200 3375700 1 1 0 1 1 1 1 1 1 1 1 3269400 5247900 0 4425400 3442500 5129400 4079400 2403100 2342000 2588300 3537800 3043900 4893800 241150 4583300 3314700 5120800 4050900 2586500 2501000 2520200 3375700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1282100000 1282100000 0 9382 1154 8728 50184;50185;50186;50187 60718;60719;60720 60719 3 IQELFHVEPGLQR Unmodified 1564.8362 0.83617614 2565 Q96T88;Q96T88-2 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 0 0 0 0 By MS/MS By matching 6 0 2 1 1 61.117 61.139 3 0.021679 17993 20211116_3434_TMUAki_TMT10x_P_F6 47.545 29.814 2889600 4172900 132040 4515300 3627700 5747100 3562000 3338100 2849300 2955300 3627300 2691500 3895100 372960 4600600 3484800 5724700 3594500 3504100 2957500 2902000 3475000 1 1 1 1 1 1 1 1 1 1 1 2889600 4172900 132040 4515300 3627700 5747100 3562000 3338100 2849300 2955300 3627300 2691500 3895100 372960 4600600 3484800 5724700 3594500 3504100 2957500 2902000 3475000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 400990000 268630000 132370000 9383 2565 8729 50188;50189 60721 60721 1 IQEPNTFPAILR Unmodified 1397.7667 0.76669959 686 P15586;P15586-2 GNS N-acetylglucosamine-6-sulfatase yes no 0 0 0 0 By MS/MS 7 0 1 1 63.599 64.055 2 1.2799E-14 21563 20211116_3446_TMUAki_TMT10x_S_F7 149.95 94.889 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9384 686 8730 50190 60722 60722 1 IQESHPELR Unmodified 1107.5673 0.5672715 2841 Q9H9B4 SFXN1 Sideroflexin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 29.967 29.72 3 0.025557 9005 20211116_3441_TMUAki_TMT10x_S_F3 51.879 38.208 1268300 1993700 3114 1780200 1852600 2235000 1537000 1350500 1487900 1420600 1599000 1180900 1859500 112730 1838000 1768400 2229000 1574000 1419800 1519800 1384500 1539100 3 3 2 3 3 3 3 3 3 3 3 886460 1413800 2992.7 1238500 1451600 1881300 1127000 1003300 1111300 1086700 1138700 825370 1318600 80693 1285400 1383700 1857200 1159600 1066900 1132200 1057900 1097600 2 2 1 2 2 2 2 2 2 2 2 381880 579910 121.37 541720 400960 353730 410020 347140 376610 333940 460360 355570 540970 32041 552530 384690 371800 414390 352890 387570 326690 441500 1 1 1 1 1 1 1 1 1 1 1 38042000 12310000 25731000 9385 2841 8731 50191;50192 60723 60723 1 IQESHPELRR Unmodified 1263.6684 0.66838253 2841 Q9H9B4 SFXN1 Sideroflexin-1 yes yes 0 0 0 1 By MS/MS 3 0 1 1 27.345 27.061 4 0.021706 7941 20211116_3441_TMUAki_TMT10x_S_F3 55.084 31.73 56906 115200 2976.3 94083 76648 61762 80125 65567 55796 56335 84011 53007 107410 7768.3 96988 73761 64998 80339 66196 58829 55400 80169 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 56906 115200 2976.3 94083 76648 61762 80125 65567 55796 56335 84011 53007 107410 7768.3 96988 73761 64998 80339 66196 58829 55400 80169 1 1 1 1 1 1 1 1 1 1 1 2956500 0 2956500 9386 2841 8732 50193 60724 60724 1 IQETLICTLIQLK Unmodified 1571.8957 0.89566486 3360 yes no 0 0 0 0 By MS/MS 6 0 1 1 57.872 57.927 3 0.061757 17075 20211116_3445_TMUAki_TMT10x_S_F6 35.737 12.256 + 3989800 7231000 0 7772700 4170600 3731300 2862700 6498500 6144800 5940800 5987900 3714700 6749300 304850 7830800 3964300 4112700 3073800 6450800 6102100 5825100 5781100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3989800 7231000 0 7772700 4170600 3731300 2862700 6498500 6144800 5940800 5987900 3714700 6749300 304850 7830800 3964300 4112700 3073800 6450800 6102100 5825100 5781100 1 1 0 1 1 1 1 1 1 1 1 362280000 0 362280000 9387 3360 8733 50194 60725 60725 1 IQETQAELPR Unmodified 1183.6197 0.619701 1716 Q14566 MCM6 DNA replication licensing factor MCM6 yes yes 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 38.804 38.715 2 0.0012473 9555 20211116_3440_TMUAki_TMT10x_S_F2 92.611 68.276 423930 800600 6272.5 838770 458230 340540 395950 632180 708630 538770 733400 394770 747190 41473 845540 438180 384210 414570 625240 708100 530040 706720 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 423930 800600 6272.5 838770 458230 340540 395950 632180 708630 538770 733400 394770 747190 41473 845540 438180 384210 414570 625240 708100 530040 706720 2 2 2 2 2 2 2 2 2 2 2 64746000 0 64746000 9388 1716 8734 50195;50196 60726;60727 60727 2 IQFHNVKPEYLDAYNSLTEAVLPK Unmodified 2788.4436 0.44358112 2618 Q9BPW8 NIPSNAP1 Protein NipSnap homolog 1 yes yes 0 0 0 1 By MS/MS By MS/MS 1.83 0.687 2 3 1 3 3 76.666 76.601 4;5 2.3976E-17 25090 20211116_3440_TMUAki_TMT10x_S_F2 139.02 125.42 43160000 71457000 435410 67415000 47982000 54439000 57235000 34164000 33614000 35964000 46516000 40187000 66662000 3765800 68866000 46248000 55804000 56841000 35813000 35688000 35050000 44473000 7 7 4 7 7 7 7 7 7 7 7 21360000 33332000 322760 31270000 18028000 30798000 22692000 16221000 14985000 16988000 19981000 19891000 31094000 2025100 32039000 17423000 31077000 22535000 17251000 15759000 16560000 19120000 3 3 3 3 3 3 3 3 3 3 3 21800000 38125000 112650 36145000 29953000 23641000 34543000 17943000 18629000 18975000 26535000 20296000 35567000 1740700 36827000 28824000 24727000 34306000 18562000 19929000 18490000 25353000 4 4 1 4 4 4 4 4 4 4 4 12498000000 6670500000 5827300000 9389 2618 8735 50197;50198;50199;50200;50201;50202 60728;60729;60730;60731;60732;60733;60734 60734 7 IQFKPDDGISPER Unmodified 1500.7573 0.75725712 2494 Q96I24 FUBP3 Far upstream element-binding protein 3 yes yes 0 0 0 1 By MS/MS By MS/MS 5.33 0.943 1 2 1 2 46.774 46.92 3 0.0019989 13496 20211116_3442_TMUAki_TMT10x_S_F4 69.878 52.853 9964500 17202000 208320 19327000 13847000 16051000 9993200 16118000 16628000 14100000 14457000 9279200 16059000 1041500 19518000 13191000 16555000 10543000 16324000 16549000 13854000 14013000 3 3 2 3 3 3 3 3 3 3 3 3480900 6002100 8856 6136100 8205800 10510000 5149600 6015300 6029000 5079700 4601700 3241200 5601100 363020 6315800 7791800 10336000 5410500 6314800 6044300 4999600 4483200 1 1 1 1 1 1 1 1 1 1 1 6483500 11199000 199470 13191000 5641100 5540800 4843600 10103000 10599000 9020800 9855100 6038000 10458000 678490 13202000 5398900 6219000 5132900 10010000 10504000 8854800 9529900 2 2 1 2 2 2 2 2 2 2 2 749420000 319720000 429700000 9390 2494 8736 50203;50204;50205 60735;60736;60737 60736 3 IQFKPDDGTTPER Unmodified 1502.7365 0.73652168 2408;2407 Q96AE4-2;Q96AE4 FUBP1 Far upstream element-binding protein 1 no no 0 0 0 1 By MS/MS By MS/MS 4.83 1.07 1 1 2 2 3 3 40.015 40.117 3 4.4638E-09 10917 20211116_3442_TMUAki_TMT10x_S_F4 125.73 97.76 22081000 33614000 281240 46393000 43285000 31175000 24331000 33337000 41982000 25325000 37330000 20561000 31413000 2373400 46198000 41043000 32746000 26218000 33546000 41772000 25064000 36155000 11 11 8 11 11 11 11 11 11 11 11 7927500 11628000 50457 15089000 29546000 20114000 10586000 10837000 12927000 8716700 12062000 7381500 10863000 990680 15224000 27855000 19973000 11802000 11423000 13018000 8600600 11663000 4 4 1 4 4 4 4 4 4 4 4 14153000 21986000 230780 31304000 13739000 11061000 13745000 22500000 29055000 16608000 25267000 13180000 20550000 1382700 30974000 13188000 12774000 14416000 22122000 28754000 16463000 24492000 7 7 7 7 7 7 7 7 7 7 7 2289000000 1016900000 1272100000 9391 2408;2407 8737 50206;50207;50208;50209;50210;50211 60738;60739;60740;60741;60742;60743;60744;60745;60746;60747;60748 60743 11 IQGLTVEQAEAVVR Unmodified 1511.8308 0.83075641 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 4 2 3 3 61.384 61.409 2;3 3.9372E-10 19069 20211116_3431_TMUAki_TMT10x_P_F4 120.29 101.16 51619000 94864000 124120 87865000 74866000 90298000 58812000 79476000 86185000 69107000 78274000 48060000 88492000 4309400 90168000 71362000 91597000 61343000 81041000 86200000 67921000 75753000 6 6 2 6 6 6 6 6 6 6 6 25304000 44851000 16063 40920000 47125000 64008000 35147000 38476000 43179000 31566000 36867000 23559000 41836000 2137700 42368000 44868000 63209000 36526000 40201000 43351000 31114000 35760000 3 3 1 3 3 3 3 3 3 3 3 26315000 50012000 108060 46945000 27740000 26290000 23665000 41000000 43007000 37541000 41407000 24501000 46655000 2171700 47800000 26494000 28387000 24817000 40840000 42849000 36807000 39994000 3 3 1 3 3 3 3 3 3 3 3 2243100000 957410000 1285700000 9392 1695 8738 50212;50213;50214;50215;50216;50217 60749;60750;60751;60752;60753;60754;60755 60750 7 IQHAVQLATEPLEK Unmodified 1575.8621 0.86205654 1105 P49589-3;P49589;P49589-2 CARS Cysteine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 55.297 55.704 3 0.014321 17559 20211116_3435_TMUAki_TMT10x_P_F7 54.898 36.302 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9393 1105 8739 50218;50219 60756;60757 60757 2 IQHILCTGNLCTK Unmodified 1556.7803 0.78031752 3083 Q9UBQ0;Q9UBQ0-2 VPS29 Vacuolar protein sorting-associated protein 29 yes no 0 0 0 0 By MS/MS By MS/MS 2.4 0.49 3 2 2 3 49.935 49.779 3 1.8542E-18 16976 20211116_3441_TMUAki_TMT10x_S_F3 150.22 119.34 3144200 4987200 39637 6129400 8471900 7934000 4623400 4209300 4380400 3889600 4605000 2927900 4657800 372240 6199300 8028900 7887600 4883400 4458200 4474900 3812000 4435300 2 2 2 2 2 2 2 2 2 2 2 3144200 4987200 39637 6129400 8471900 7934000 4623400 4209300 4380400 3889600 4605000 2927900 4657800 372240 6199300 8028900 7887600 4883400 4458200 4474900 3812000 4435300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1201100000 1014200000 186860000 9394 3083 8740 50220;50221;50222;50223;50224 60758;60759;60760;60761 60761 4 IQHSITAQDHQPTPDSCIISMVVGQLK Oxidation (M) 3018.4903 0.4902901 1328 P61970 NUTF2 Nuclear transport factor 2 yes yes 0 0 1 0 By MS/MS 8 0 1 1 66.346 66.486 4 8.8783E-09 20823 20211116_3436_TMUAki_TMT10x_P_F8 87.881 75.326 1662500 2861700 60118 2458300 2106900 3625500 2254000 1747500 1569700 1863600 2329100 1548400 2668700 200080 2553800 2027500 3579200 2257500 1875000 1653800 1815300 2223300 1 1 1 1 1 1 1 1 1 1 1 1662500 2861700 60118 2458300 2106900 3625500 2254000 1747500 1569700 1863600 2329100 1548400 2668700 200080 2553800 2027500 3579200 2257500 1875000 1653800 1815300 2223300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1120100000 1120100000 0 9395 1328 8741 50225 60762 60762 1778 1 IQHSITAQDHQPTPDSCIISMVVGQLK Unmodified 3002.4954 0.49537547 1328 P61970 NUTF2 Nuclear transport factor 2 yes yes 0 0 0 0 By matching By MS/MS 8 0 2 1 1 73.852 73.8 4 2.2677E-42 23289 20211116_3447_TMUAki_TMT10x_S_F8 194.62 181.56 6408000 9492000 0 11026000 6283300 5365000 6706100 3853400 4679500 4766000 5804700 5966300 8862800 264870 11055000 6034000 5780700 6717500 4021500 4889200 4617100 5564700 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6408000 9492000 0 11026000 6283300 5365000 6706100 3853400 4679500 4766000 5804700 5966300 8862800 264870 11055000 6034000 5780700 6717500 4021500 4889200 4617100 5564700 2 2 0 2 2 2 2 2 2 2 2 1964600000 968040000 996570000 9396 1328 8741 50226;50227 60763;60764 60763 2 IQIAPDSGGLPER Unmodified 1351.7096 0.70957864 2408;2407 Q96AE4-2;Q96AE4 FUBP1 Far upstream element-binding protein 1 no no 0 0 0 0 By MS/MS By MS/MS 3.89 0.737 3 4 2 4 5 49.036 49.061 2;3 3.9376E-25 16707 20211116_3441_TMUAki_TMT10x_S_F3 224.03 172.96 23201000 35765000 354760 46708000 42970000 41515000 26406000 37978000 38606000 31205000 35835000 21604000 33413000 2450000 46800000 40802000 42534000 28028000 38589000 38643000 30756000 34655000 11 11 8 11 11 11 11 11 11 11 11 11413000 17332000 198930 22485000 34036000 33096000 18268000 19327000 19727000 15768000 17610000 10628000 16192000 1422300 22733000 32249000 32752000 19400000 20238000 19930000 15547000 17053000 5 5 4 5 5 5 5 5 5 5 5 11788000 18433000 155820 24224000 8934000 8419100 8137400 18652000 18879000 15437000 18225000 10976000 17221000 1027700 24067000 8552200 9781600 8628300 18351000 18713000 15209000 17602000 6 6 4 6 6 6 6 6 6 6 6 6928500000 3944400000 2984100000 9397 2408;2407 8742 50228;50229;50230;50231;50232;50233;50234;50235;50236 60765;60766;60767;60768;60769;60770;60771;60772;60773;60774;60775 60770 11 IQIASESSGIPERPCVLTGTPESIEQAKR Unmodified 3152.6136 0.61357635 2494 Q96I24;Q96I24-2 FUBP3 Far upstream element-binding protein 3 yes no 0 0 0 2 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 56.307 56.751 4 9.826E-78 18000 20211116_3435_TMUAki_TMT10x_P_F7 242.45 226.05 19278000 35031000 65748 32949000 22522000 22785000 18191000 22578000 20543000 22899000 25565000 17949000 32680000 1199600 33609000 21484000 23834000 18751000 22976000 20974000 22351000 24506000 6 6 2 6 6 6 6 6 6 6 6 2911000 5271000 0 4908100 4052400 6360800 3755500 3525300 2770200 3435400 3662000 2710300 4917100 242740 5054400 3877200 6326600 3794400 3724700 2892900 3358900 3505000 1 1 0 1 1 1 1 1 1 1 1 16367000 29760000 65748 28041000 18469000 16425000 14435000 19053000 17773000 19463000 21903000 15239000 27763000 956830 28554000 17607000 17508000 14956000 19251000 18081000 18992000 21001000 5 5 2 5 5 5 5 5 5 5 5 5026100000 1721000000 3305100000 9398 2494 8743 50237;50238;50239 60776;60777;60778;60779;60780;60781 60776 6 IQIEAIPLALQGR Unmodified 1420.8402 0.84019889 2779 Q9H0S4;Q9H0S4-2 DDX47 Probable ATP-dependent RNA helicase DDX47 yes no 0 0 0 0 By MS/MS By MS/MS 6.75 2.22 1 3 4 3 5 74.681 74.635 2;3 4.1066E-24 23620 20211116_3447_TMUAki_TMT10x_S_F8 194.49 120.36 15159000 25874000 196570 23036000 16781000 25770000 18715000 17269000 17229000 17635000 20044000 14115000 24133000 1386700 23742000 16146000 25893000 18836000 17997000 17693000 17209000 19248000 5 5 2 5 5 5 5 5 5 5 5 9619300 16197000 186170 14394000 9729200 19003000 12001000 10677000 10936000 10829000 12286000 8957400 15107000 903500 14881000 9392700 18888000 12021000 11280000 11220000 10570000 11810000 3 3 1 3 3 3 3 3 3 3 3 5539200 9677400 10397 8641700 7051400 6766700 6713600 6591600 6293000 6806700 7757700 5157600 9026200 483210 8861100 6752900 7005100 6814600 6717100 6472500 6638900 7438300 2 2 1 2 2 2 2 2 2 2 2 3064400000 2208000000 856390000 9399 2779 8744 50240;50241;50242;50243;50244;50245;50246;50247 60782;60783;60784;60785;60786;60787;60788;60789;60790 60790 9 IQILASEVEEEEERVK Unmodified 1899.9789 0.97893679 2058 Q7L2Z9 CENPQ Centromere protein Q yes yes 0 0 0 1 By MS/MS 1 0 1 1 72.684 72.564 3 6.0434E-15 25231 20211116_3439_TMUAki_TMT10x_S_F1 144.97 78.441 5864000 9536300 0 9358800 7042300 6159300 6385300 6793200 6893700 6920900 7587500 5458900 8897700 378210 9512200 6727900 6486300 6527000 6878700 7015500 6754000 7297900 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5864000 9536300 0 9358800 7042300 6159300 6385300 6793200 6893700 6920900 7587500 5458900 8897700 378210 9512200 6727900 6486300 6527000 6878700 7015500 6754000 7297900 2 2 0 2 2 2 2 2 2 2 2 439920000 0 439920000 9400 2058 8745 50248 60791;60792 60792 2 IQIPRPDDPSNQIK Unmodified 1619.8631 0.86311917 1467 Q00341;Q00341-2 HDLBP Vigilin yes no 0 0 0 1 By MS/MS 7 0 1 1 48.887 49.511 3 2.3027E-06 15120 20211116_3435_TMUAki_TMT10x_P_F7 88.282 66.409 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9401 1467 8746 50249 60793 60793 1 IQLIFER Unmodified 917.53345 0.53345218 1753 Q15020;Q15020-4;Q15020-2 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 64.126 64.399 2 0.020699 21131 20211116_3435_TMUAki_TMT10x_P_F7 87.251 21.939 15416000 25560000 0 24545000 20265000 27191000 17981000 21894000 19441000 20272000 20551000 14352000 23847000 1171000 25151000 19362000 27419000 18404000 22479000 19754000 19865000 19791000 3 3 0 3 3 3 3 3 3 3 3 9697400 15987000 0 15536000 14142000 21848000 12541000 13669000 12272000 13065000 12760000 9028100 14916000 719790 15975000 13510000 21684000 12797000 14293000 12514000 12785000 12294000 2 2 0 2 2 2 2 2 2 2 2 5718100 9573500 0 9008900 6122900 5343300 5439600 8224200 7168900 7206600 7791800 5323900 8931000 451230 9175700 5851900 5734200 5606900 8186000 7239500 7080300 7497200 1 1 0 1 1 1 1 1 1 1 1 1463500000 907580000 555920000 9402 1753 8747 50250;50251;50252 60794;60795;60796 60794 3 IQLLDLPGIIEGAK Unmodified 1478.8708 0.87083031 3234 Q9Y295 DRG1 Developmentally-regulated GTP-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 1 3 80.457 80.475 2;3 1.3433E-13 28435 20211116_3446_TMUAki_TMT10x_S_F7 132.79 111.23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9403 3234 8748 50253;50254;50255;50256 60797;60798;60799;60800 60799 4 IQLLVFK Unmodified 859.55312 0.55312499 3224 Q9Y262;Q9Y262-2 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 75.732 75.728 2 0.0023825 25366 20211116_3442_TMUAki_TMT10x_S_F4 126.54 66.389 33291000 56522000 240210 53728000 44314000 53704000 37094000 40981000 37754000 37716000 42948000 30998000 52730000 2972300 55008000 42313000 54426000 38024000 42211000 38564000 36970000 41270000 6 6 2 6 6 6 6 6 6 6 6 15815000 26318000 0 25511000 22493000 37049000 20552000 19867000 18777000 18422000 19969000 14724000 24554000 1258700 26255000 21509000 36645000 20893000 21024000 19222000 18051000 19226000 3 3 0 3 3 3 3 3 3 3 3 17476000 30204000 240210 28216000 21821000 16655000 16543000 21114000 18977000 19294000 22979000 16273000 28176000 1713500 28753000 20804000 17781000 17131000 21188000 19342000 18919000 22044000 3 3 2 3 3 3 3 3 3 3 3 1518900000 925960000 592930000 9404 3224 8749 50257;50258;50259;50260 60801;60802;60803;60804;60805;60806 60804 6 IQLVEEELDR Unmodified 1242.6456 0.6455814 526;527;525;1413;578;579 P06753-2;P06753-3;P06753-5;P06753-4;P06753-6;P09493-4;P09493;P09493-6;P06753;P09493-5;P67936;P67936-2;P07951;P07951-2;CON__Q3SX28;P07951-3 TPM3;TPM1;TPM4;TPM2 Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain;Tropomyosin beta chain no no 0 0 0 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 66.651 66.407 2 1.3168E-11 20658 20211116_3428_TMUAki_TMT10x_P_F1 216.26 139.36 + 22682000 36380000 111440 39066000 28073000 31908000 23495000 25163000 25985000 24328000 29036000 21119000 33956000 1842400 39557000 26795000 32795000 24149000 25899000 26435000 23794000 27916000 5 5 2 5 5 5 5 5 5 5 5 9215300 14455000 10867 15298000 14272000 19474000 11216000 9343600 10296000 9711500 11384000 8580400 13491000 842830 15610000 13609000 19354000 11509000 10022000 10553000 9469600 10948000 2 2 1 2 2 2 2 2 2 2 2 13467000 21924000 100580 23768000 13800000 12434000 12279000 15819000 15689000 14616000 17652000 12538000 20465000 999560 23947000 13186000 13442000 12640000 15877000 15881000 14324000 16968000 3 3 1 3 3 3 3 3 3 3 3 3364300000 1682300000 1682000000 9405 526;527;578;525;579;1413 8750 50261;50262;50263;50264;50265 60807;60808;60809;60810;60811 60807 5 IQLVEEELDRAQER Unmodified 1726.885 0.88497683 526;527;525;1413;578;579 P06753-2;P06753-3;P06753-5;P06753-4;P06753-6;P09493-4;P09493;P09493-6;P06753;P09493-5;P67936;P67936-2;P07951;P07951-2;CON__Q3SX28;P07951-3 TPM3;TPM1;TPM4;TPM2 Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain;Tropomyosin beta chain no no 0 0 0 1 By MS/MS By MS/MS 2.3 1.1 3 3 2 2 6 4 63.583 63.395 2;3 1.8527E-35 19486 20211116_3428_TMUAki_TMT10x_P_F1 247.79 221.85 + 87972000 150940000 346460 157180000 108790000 129410000 87176000 118030000 115210000 105070000 116000000 81903000 140870000 6654200 159500000 103710000 133290000 90424000 120190000 116010000 103150000 111880000 13 13 5 13 13 13 13 13 13 13 13 35537000 58657000 12464 60985000 54317000 80962000 45743000 44993000 45255000 42699000 44810000 33085000 54742000 2798600 62349000 51840000 80438000 46833000 47492000 46045000 41796000 43240000 7 7 1 7 7 7 7 7 7 7 7 52436000 92286000 334000 96198000 54471000 48448000 41432000 73032000 69953000 62375000 71190000 48819000 86127000 3855600 97147000 51868000 52853000 43591000 72694000 69961000 61357000 68637000 6 6 4 6 6 6 6 6 6 6 6 44621000000 24163000000 20458000000 9406 526;527;578;525;579;1413 8751 50266;50267;50268;50269;50270;50271;50272;50273;50274;50275 60812;60813;60814;60815;60816;60817;60818;60819;60820;60821;60822;60823;60824 60814 13 IQLYDNDIYFIPR Unmodified 1668.8512 0.8511575 2005 Q6PCB5;Q6PCB5-2 RSBN1L Round spermatid basic protein 1-like protein yes no 0 0 0 0 By MS/MS 7 0 1 1 77.73 77.793 2 7.5964E-09 27331 20211116_3446_TMUAki_TMT10x_S_F7 123.95 91.628 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9407 2005 8752 50276 60825 60825 1 IQNDAGVR Unmodified 871.45118 0.45117911 2408;2407;2380;2494 Q92945;Q96AE4-2;Q96AE4;Q96I24;Q96I24-2 KHSRP;FUBP1;FUBP3 Far upstream element-binding protein 2;Far upstream element-binding protein 1;Far upstream element-binding protein 3 no no 0 0 0 0 By matching By MS/MS 2.5 0.5 1 1 1 1 29.629 29.381 2 0.00083729 8852 20211116_3441_TMUAki_TMT10x_S_F3 133.05 85.309 185740 309300 2132.4 263800 197960 186610 233070 171210 163480 174870 252840 172960 288440 17557 271180 190820 194530 232420 174960 172520 170640 241140 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 185740 309300 2132.4 263800 197960 186610 233070 171210 163480 174870 252840 172960 288440 17557 271180 190820 194530 232420 174960 172520 170640 241140 1 1 1 1 1 1 1 1 1 1 1 6538600 3305200 3233400 9408 2380;2408;2407;2494 8753 50277;50278 60826 60826 1 IQNGAQGIR Unmodified 955.51993 0.51992738 894 P31943 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes yes 0 0 0 0 By MS/MS 5 0 1 1 30.919 30.855 2 0.00073777 7041 20211116_3433_TMUAki_TMT10x_P_F5 113.41 77.793 334410 572050 11778 487480 673280 623050 399070 329580 370180 326380 447830 311460 533470 43448 505310 639390 619760 418240 349810 380610 318890 429600 1 1 1 1 1 1 1 1 1 1 1 334410 572050 11778 487480 673280 623050 399070 329580 370180 326380 447830 311460 533470 43448 505310 639390 619760 418240 349810 380610 318890 429600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15695000 15695000 0 9409 894 8754 50279 60827 60827 1 IQPFHFIKDPK Unmodified 1368.7554 0.75540662 2247 Q8NEZ5;Q8NEZ5-3 FBXO22 F-box only protein 22 yes no 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 52.675 52.41 4 0.00042475 18192 20211116_3441_TMUAki_TMT10x_S_F3 84.718 70.754 8520900 13645000 179500 16474000 32907000 28141000 12000000 16940000 19542000 14245000 15493000 7934900 12743000 1187700 16781000 31037000 27697000 13499000 17708000 19407000 14023000 15071000 2 2 1 2 2 2 2 2 2 2 2 7096000 11112000 179500 13755000 31618000 26963000 10947000 14558000 17261000 12270000 13239000 6608400 10379000 1099000 14044000 29808000 26375000 12380000 15359000 17141000 12078000 12896000 1 1 1 1 1 1 1 1 1 1 1 1424900 2532500 0 2718800 1288900 1178000 1053100 2382700 2280700 1974600 2254200 1326500 2363800 88690 2737500 1228100 1322200 1118500 2349500 2265500 1945300 2175300 1 1 0 1 1 1 1 1 1 1 1 1073900000 509810000 564090000 9410 2247 8755 50280;50281;50282 60828;60829 60829 2 IQPGSQQADFLDALIVSMDVIQHETIGK Oxidation (M) 3068.5489 0.54885083 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 1 0 By MS/MS By MS/MS 5.5 1.5 1 2 2 3 4 5 7 80.747 80.755 3;4 8.9265E-34 26031 20211116_3434_TMUAki_TMT10x_P_F6 175.59 163.15 13661000 21840000 201070 19279000 13117000 26233000 15414000 15780000 17767000 18954000 17404000 12721000 20369000 1155700 19953000 12643000 26060000 15588000 16666000 17959000 18381000 16800000 10 10 7 10 10 10 10 10 10 10 10 9695900 15196000 114720 13442000 8306200 21272000 9874500 11174000 12550000 13183000 11763000 9028200 14173000 830950 13954000 8006900 20961000 10017000 11931000 12623000 12793000 11372000 6 6 4 6 6 6 6 6 6 6 6 3965500 6643900 86357 5837600 4811000 4960100 5539100 4605400 5217200 5770900 5640900 3692900 6196500 324750 5999100 4636600 5099200 5570600 4735200 5336800 5588200 5428500 4 4 3 4 4 4 4 4 4 4 4 9433700000 4364700000 5069000000 9411 648 8756 50283;50284;50285;50286;50287;50288;50289;50290;50291;50292;50293;50294 60830;60831;60832;60833;60834;60835;60836;60837;60838;60839;60840 60833 699 11 IQPLDVCIKR Unmodified 1240.6962 0.69617719 2076 Q7Z3K3;Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-6;Q7Z3K3-3 POGZ Pogo transposable element with ZNF domain yes no 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 49.286 49.236 3 5.2622E-09 15757 20211116_3439_TMUAki_TMT10x_S_F1 126.19 97.045 2800200 4446300 34888 4801100 4569700 4682400 2913000 3948300 3917100 3691600 4166600 2607400 4150200 281050 4871100 4341600 4760900 3072500 4043800 3949900 3615900 4011700 2 2 1 2 2 2 2 2 2 2 2 1413100 2210100 34888 2376100 3155800 3439300 1665500 2020700 1946600 1891800 2119700 1316000 2062900 174080 2428200 2990600 3406300 1776000 2122300 1974200 1852900 2039400 1 1 1 1 1 1 1 1 1 1 1 1387100 2236200 0 2425000 1413900 1243100 1247600 1927600 1970500 1799800 2046900 1291500 2087300 106980 2442900 1351000 1354600 1296500 1921500 1975700 1763000 1972200 1 1 0 1 1 1 1 1 1 1 1 279230000 199820000 79414000 9412 2076 8757 50295;50296;50297;50298 60841;60842;60843;60844 60843 4 IQQEIAVQNPLVSER Unmodified 1722.9264 0.92644771 2463 Q96FW1 OTUB1 Ubiquitin thioesterase OTUB1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 0.667 1 4 4 5 4 59.459 59.566 2;3 3.2093E-51 18299 20211116_3431_TMUAki_TMT10x_P_F4 283.95 216.92 26241000 43262000 231380 43853000 37201000 46629000 32537000 32594000 32106000 30856000 33640000 24432000 40370000 2225100 44737000 35546000 47016000 33234000 33796000 32736000 30207000 32404000 9 9 3 9 9 9 9 9 9 9 9 17018000 28418000 229470 28475000 26473000 37943000 23871000 21966000 21121000 20239000 22095000 15845000 26517000 1535100 29187000 25318000 37711000 24264000 23088000 21642000 19837000 21285000 6 6 2 6 6 6 6 6 6 6 6 9223000 14844000 1917.6 15378000 10728000 8685400 8665700 10629000 10985000 10617000 11544000 8586700 13853000 689950 15550000 10228000 9304600 8969600 10708000 11094000 10370000 11119000 3 3 1 3 3 3 3 3 3 3 3 4349400000 2641600000 1707800000 9413 2463 8758 50299;50300;50301;50302;50303;50304;50305;50306;50307 60845;60846;60847;60848;60849;60850;60851;60852;60853;60854;60855 60847 11 IQQLTALGAAQATAKA Unmodified 1554.873 0.87295558 2576 Q99471;Q99471-3 PFDN5 Prefoldin subunit 5 yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 63.658 63.391 3 3.1461E-16 21075 20211116_3429_TMUAki_TMT10x_P_F2 159.69 143.88 9811200 17039000 125930 18584000 11356000 14329000 10605000 13395000 13006000 13100000 12509000 9135800 15905000 912680 18786000 10875000 14839000 10871000 13657000 13109000 12807000 12082000 3 3 2 3 3 3 3 3 3 3 3 4164900 6492600 0 7300500 5588500 8280400 4868000 5102100 5301300 4938400 4775800 3877600 6061300 325500 7405300 5337800 8303700 4988900 5343000 5355500 4829800 4623300 1 1 0 1 1 1 1 1 1 1 1 5646300 10546000 125930 11284000 5767900 6049000 5737100 8292900 7704900 8162000 7733200 5258200 9843400 587180 11381000 5537400 6535700 5881900 8314500 7753300 7976800 7459100 2 2 2 2 2 2 2 2 2 2 2 1312700000 720330000 592380000 9414 2576 8759 50308;50309 60856;60857;60858 60856 3 IQRHVLNSMQIFK Oxidation (M) 1628.8821 0.88208048 3380 yes no 0 0 1 1 By MS/MS 5 0 1 1 57.781 57.916 3 0.06774 16776 20211116_3444_TMUAki_TMT10x_S_F5 40.113 19.45 + 3062100 5711000 76282 5555800 4767300 3243100 2898100 4746100 4017900 3986400 4647000 2851700 5328400 348850 5644200 4528700 3480300 3072000 4726900 4060900 3924600 4463300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3062100 5711000 76282 5555800 4767300 3243100 2898100 4746100 4017900 3986400 4647000 2851700 5328400 348850 5644200 4528700 3480300 3072000 4726900 4060900 3924600 4463300 1 1 1 1 1 1 1 1 1 1 1 150420000 0 150420000 9415 3380 8760 50310 60859 60859 3310 1 IQRPPEDSIQPYEK Unmodified 1698.8577 0.85769944 1868 Q16851;Q16851-2 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 0 0 0 1 By MS/MS 4 0 1 1 41.755 41.829 3 1.5046E-19 11091 20211116_3431_TMUAki_TMT10x_P_F4 145.86 118.21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9416 1868 8761 50311 60860 60860 1 IQSAIACTNIFPLGR Unmodified 1659.8767 0.87666075 2929 Q9NRL2;Q9NRL2-2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 0 0 0 0 By MS/MS By MS/MS 3.6 0.49 2 3 2 3 74.163 74.034 2;3 1.2544E-27 24233 20211116_3431_TMUAki_TMT10x_P_F4 178.15 139.85 5144700 9492100 8880.9 8043600 6488200 7849100 6084100 5752700 5190200 5825900 6947600 4790000 8851800 422020 8305200 6209500 7961000 6164800 5956900 5381600 5686900 6647700 3 3 1 3 3 3 3 3 3 3 3 1815500 3121100 8880.9 2852700 1970800 4038900 2327000 2190400 1826800 2068300 2409000 1690400 2911300 160970 2946900 1899200 3999900 2326300 2316700 1901000 2025100 2305800 1 1 1 1 1 1 1 1 1 1 1 3329200 6371000 0 5190900 4517400 3810200 3757100 3562300 3363400 3757600 4538600 3099600 5940500 261060 5358300 4310300 3961200 3838500 3640200 3480600 3661800 4341900 2 2 0 2 2 2 2 2 2 2 2 829280000 194270000 635010000 9417 2929 8762 50312;50313;50314;50315;50316 60861;60862;60863;60864;60865 60862 5 IQSATVLLNEDVSDEK Unmodified 1759.884 0.88397377 2247 Q8NEZ5 FBXO22 F-box only protein 22 yes yes 0 0 0 0 By MS/MS 3 0 1 1 65.725 65.436 3 3.3397E-05 22411 20211116_3430_TMUAki_TMT10x_P_F3 85.362 72.595 3316900 5320300 55453 4955600 4192200 6409700 4480100 3289900 2630700 3132700 4376000 3088700 4963100 338930 5103100 4030300 6369900 4472100 3497700 2819100 3066000 4167300 1 1 1 1 1 1 1 1 1 1 1 3316900 5320300 55453 4955600 4192200 6409700 4480100 3289900 2630700 3132700 4376000 3088700 4963100 338930 5103100 4030300 6369900 4472100 3497700 2819100 3066000 4167300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 361040000 361040000 0 9418 2247 8763 50317 60866 60866 1 IQSGHSLEGCFQVIK Unmodified 1701.8508 0.85083993 5 A0AVT1;A0AVT1-2 UBA6 Ubiquitin-like modifier-activating enzyme 6 yes no 0 0 0 0 By MS/MS 7 0 1 1 51.788 52.291 3 0.00051415 16800 20211116_3446_TMUAki_TMT10x_S_F7 74.296 54.457 2248300 4145400 36850 4159200 2260400 2407800 2136900 3556700 3439300 3249600 3348200 2093700 3868100 220910 4215900 2166500 2586700 2214300 3549000 3438700 3186400 3232700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2248300 4145400 36850 4159200 2260400 2407800 2136900 3556700 3439300 3249600 3348200 2093700 3868100 220910 4215900 2166500 2586700 2214300 3549000 3438700 3186400 3232700 1 1 1 1 1 1 1 1 1 1 1 115010000 0 115010000 9419 5 8764 50318 60867 60867 1 IQSPTEETEIFYHR Unmodified 1748.837 0.836964 1999 Q6P4A7;Q6P4A7-3 SFXN4 Sideroflexin-4 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 50.272 50.157 3 2.5946E-14 14883 20211116_3442_TMUAki_TMT10x_S_F4 153.7 123.76 1833700 3236600 1110.1 3903900 1709900 1646000 1508400 2583800 2893800 2342200 2773200 1707400 3022600 151330 3901700 1634600 1837100 1583400 2572500 2879100 2297500 2678900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1833700 3236600 1110.1 3903900 1709900 1646000 1508400 2583800 2893800 2342200 2773200 1707400 3022600 151330 3901700 1634600 1837100 1583400 2572500 2879100 2297500 2678900 1 1 1 1 1 1 1 1 1 1 1 255030000 0 255030000 9420 1999 8765 50319;50320;50321;50322 60868;60869;60870 60870 3 IQTLPNQNQSQTQPLLK Unmodified 1950.0534 0.053439139 2152 Q8IX12;Q8IX12-2 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 0 0 0 0 By MS/MS 8 0 1 1 54.777 54.709 3 0.075561 15529 20211116_3447_TMUAki_TMT10x_S_F8 34.721 18.415 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9421 2152 8766 50323 60871 60871 1 IQTQPGYANTLR Unmodified 1360.7099 0.709913 1466 Q00325-2;Q00325 SLC25A3 Phosphate carrier protein, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 7.14 0.833 2 2 3 4 3 38.489 38.763 2;3 2.5683E-30 8960 20211116_3447_TMUAki_TMT10x_S_F8 261.35 202.92 3060100 4774800 1530.4 5923400 8617200 6085900 3782600 3397300 4195100 2714900 4372200 2849000 4459700 297140 5964200 8138800 6129400 4102400 3569400 4256000 2679600 4212300 7 7 1 7 7 7 7 7 7 7 7 2481200 3815800 1530.4 4643900 8062800 5626700 3145000 2717700 3264200 2229900 3466000 2310000 3563600 252620 4693800 7605400 5606200 3451000 2895300 3322700 2197900 3337300 4 4 1 4 4 4 4 4 4 4 4 578960 958990 0 1279500 554360 459110 637550 679650 930870 485020 906260 539050 896040 44517 1270400 533440 523270 651420 674060 933290 481710 875000 3 3 0 3 3 3 3 3 3 3 3 1366800000 1073600000 293250000 9422 1466 8767 50324;50325;50326;50327;50328;50329;50330 60872;60873;60874;60875;60876;60877;60878;60879 60878 8 IQVHYYEDGNVQLVSHK Unmodified 2028.0065 0.0064889465 1192;1062 P52907;P47755 CAPZA1;CAPZA2 F-actin-capping protein subunit alpha-1;F-actin-capping protein subunit alpha-2 no no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 46.497 46.823 4 6.2513E-11 12493 20211116_3445_TMUAki_TMT10x_S_F6 128.69 117 18280000 31473000 336650 34822000 31469000 31661000 19898000 27393000 23461000 21447000 23647000 17022000 29380000 1858900 35240000 29893000 32353000 20899000 27888000 23718000 21191000 22805000 5 5 3 5 5 5 5 5 5 5 5 11336000 19793000 258480 21982000 25046000 26420000 14309000 17941000 15515000 14124000 14654000 10556000 18477000 1236600 22337000 23752000 26450000 15113000 18555000 15701000 13952000 14163000 3 3 2 3 3 3 3 3 3 3 3 6943800 11680000 78176 12840000 6423200 5240900 5589800 9451500 7945600 7322700 8992900 6465800 10903000 622290 12903000 6141400 5902400 5786500 9333400 8017400 7239400 8642700 2 2 1 2 2 2 2 2 2 2 2 3788300000 2183400000 1604900000 9423 1192;1062 8768 50331;50332;50333;50334 60880;60881;60882;60883;60884 60883 5 IQVLQQQADDAEER Unmodified 1641.7958 0.79582747 526;527 P06753-2;P06753-3;P06753-5;P06753-4;P06753-6 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 0 By MS/MS 2 0 1 1 48.511 48.406 3 0.028264 13628 20211116_3440_TMUAki_TMT10x_S_F2 46.926 39.796 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9424 526;527 8769 50335 60885 60885 1 IQVLQQQADDAEERAER Unmodified 1997.9766 0.97664538 526;527 P06753-2;P06753-3;P06753-5;P06753-4;P06753-6 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 1 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 49.377 49.279 3 1.7059E-47 15686 20211116_3430_TMUAki_TMT10x_P_F3 251.35 219.75 21968000 38221000 139690 49379000 34701000 35575000 22087000 33763000 34661000 28441000 33151000 20455000 35706000 1986600 49380000 32955000 37052000 23452000 34260000 34658000 27996000 32026000 9 9 6 9 9 9 9 9 9 9 9 10665000 17842000 32488 24041000 26904000 27769000 16018000 17301000 17869000 13899000 16066000 9929400 16672000 1000800 24144000 25516000 27824000 16874000 18017000 18033000 13715000 15554000 4 4 2 4 4 4 4 4 4 4 4 11303000 20379000 107200 25338000 7796800 7806300 6068800 16462000 16792000 14542000 17085000 10525000 19034000 985820 25236000 7438900 9228400 6578200 16243000 16624000 14282000 16472000 5 5 4 5 5 5 5 5 5 5 5 11537000000 7004800000 4532400000 9425 526;527 8770 50336;50337;50338;50339;50340;50341;50342;50343 60886;60887;60888;60889;60890;60891;60892;60893;60894 60888 9 IQVQSSEASFTLTAAAEEEK Unmodified 2138.0379 0.037908234 1501 Q02952;Q02952-3;Q02952-2 AKAP12 A-kinase anchor protein 12 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 66.382 66.155 3 3.1843E-18 20946 20211116_3440_TMUAki_TMT10x_S_F2 146.1 122.77 4491000 6893100 0 6673500 4755200 4439100 4753200 4000000 4173900 4269700 5079400 4181100 6431200 310130 6790100 4555200 4650200 4803500 4097100 4303700 4158900 4871800 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4491000 6893100 0 6673500 4755200 4439100 4753200 4000000 4173900 4269700 5079400 4181100 6431200 310130 6790100 4555200 4650200 4803500 4097100 4303700 4158900 4871800 2 2 0 2 2 2 2 2 2 2 2 261700000 0 261700000 9426 1501 8771 50344;50345;50346;50347 60895;60896;60897;60898;60899 60898 5 IQVTPPGFQLVFLPFADDK Unmodified 2131.1354 0.13537785 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 By MS/MS By MS/MS 3.67 2.39 1 6 4 2 2 8 7 82.189 82.183 2;3;4 7.4118E-24 28638 20211116_3429_TMUAki_TMT10x_P_F2 174.21 144.4 95621000 120490000 470680 183330000 61099000 57090000 75211000 16983000 24308000 29776000 66126000 89030000 112670000 6995000 180700000 58919000 65045000 73976000 19674000 28440000 28554000 62495000 15 15 6 15 15 15 15 15 15 15 15 52797000 66914000 420290 97341000 36264000 41391000 31022000 10743000 15118000 18047000 36800000 49161000 62551000 4263500 96318000 34657000 44929000 31249000 12688000 16845000 17325000 34828000 9 9 4 9 9 9 9 9 9 9 9 42824000 53577000 50388 85987000 24835000 15700000 44189000 6240200 9190100 11729000 29327000 39869000 50115000 2731500 84380000 24262000 20117000 42727000 6986300 11595000 11229000 27667000 6 6 2 6 6 6 6 6 6 6 6 11007000000 6355600000 4651800000 9427 647 8772 50348;50349;50350;50351;50352;50353;50354;50355;50356;50357;50358;50359;50360;50361;50362 60900;60901;60902;60903;60904;60905;60906;60907;60908;60909;60910;60911;60912;60913;60914;60915;60916 60902 17 IQVTPPGFQLVFLPFADDKR Unmodified 2287.2365 0.23648888 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 1 By MS/MS By MS/MS 3.73 0.862 1 3 5 2 6 5 80.046 80.026 3;4 1.0896E-58 26707 20211116_3431_TMUAki_TMT10x_P_F4 240.42 210.31 102840000 153120000 304860 149700000 111590000 128890000 120720000 57613000 69632000 79515000 107380000 95731000 142860000 5628100 152650000 107080000 130990000 120400000 62830000 74414000 76756000 102420000 12 12 4 12 12 12 12 12 12 12 12 50945000 69085000 215570 72561000 42452000 78497000 46129000 25513000 32946000 37702000 51005000 47428000 64477000 3240100 73867000 40742000 78411000 46190000 28978000 34735000 36320000 48643000 6 6 3 6 6 6 6 6 6 6 6 51891000 84035000 89289 77141000 69140000 50392000 74594000 32101000 36686000 41813000 56380000 48303000 78388000 2388100 78784000 66334000 52575000 74205000 33852000 39679000 40436000 53778000 6 6 1 6 6 6 6 6 6 6 6 36305000000 18108000000 18197000000 9428 647 8773 50363;50364;50365;50366;50367;50368;50369;50370;50371;50372;50373 60917;60918;60919;60920;60921;60922;60923;60924;60925;60926;60927;60928;60929 60918 13 IQVTPPGFQLVFLPFADDKRK Unmodified 2415.3315 0.3314519 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 2 By MS/MS By matching 5.5 0.5 2 2 2 2 78.358 78.354 4 5.7694E-19 26277 20211116_3433_TMUAki_TMT10x_P_F5 146.13 139.03 6368400 11101000 205420 6858800 8453000 14985000 9272900 7177200 8288700 8902500 7804400 5931200 10342000 748620 7418200 8138100 14589000 9332600 7743000 8458200 8623600 7543600 2 2 2 2 2 2 2 2 2 2 2 6368400 11101000 205420 6858800 8453000 14985000 9272900 7177200 8288700 8902500 7804400 5931200 10342000 748620 7418200 8138100 14589000 9332600 7743000 8458200 8623600 7543600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3845000000 2006600000 1838400000 9429 647 8774 50374;50375;50376;50377 60930;60931 60930 2 IQYQLVDISQDNALRDEMR Oxidation (M) 2322.1274 0.12740872 2788 Q9H299 SH3BGRL3 SH3 domain-binding glutamic acid-rich-like protein 3 yes yes 0 0 1 1 By MS/MS By MS/MS 4 0.707 1 2 1 3 1 60.147 60.127 3 0.00026251 20194 20211116_3430_TMUAki_TMT10x_P_F3 64.705 52.042 19987000 34345000 117670 31144000 24984000 38654000 22777000 30822000 30111000 28150000 26937000 18608000 32036000 1485400 32110000 23884000 38739000 23446000 31653000 30199000 27603000 26083000 6 6 2 6 6 6 6 6 6 6 6 11279000 19143000 117670 18128000 14767000 28185000 13777000 17412000 16181000 15961000 15549000 10501000 17859000 945400 18715000 14132000 27850000 14101000 18204000 16333000 15648000 15019000 4 4 2 4 4 4 4 4 4 4 4 8708700 15202000 0 13016000 10217000 10470000 8999900 13410000 13930000 12189000 11387000 8107100 14177000 539970 13395000 9752300 10889000 9345200 13449000 13866000 11955000 11064000 2 2 0 2 2 2 2 2 2 2 2 7400800000 5458600000 1942300000 9430 2788 8775 50378;50379;50380;50381 60932;60933;60934;60935;60936;60937 60932 2951 6 IQYQLVDISQDNALRDEMR Unmodified 2306.1325 0.1324941 2788 Q9H299 SH3BGRL3 SH3 domain-binding glutamic acid-rich-like protein 3 yes yes 0 0 0 1 By MS/MS By MS/MS 4.33 0.745 1 2 3 4 2 66.37 66.326 3 7.1425E-24 21078 20211116_3431_TMUAki_TMT10x_P_F4 169.58 134.65 20928000 35198000 108030 34796000 22967000 25986000 25521000 17050000 15078000 17972000 23899000 19486000 32842000 1762200 35394000 22086000 26816000 25431000 17814000 16110000 17514000 22781000 7 7 5 7 7 7 7 7 7 7 7 8998400 15044000 8423.5 14941000 9810300 15036000 11797000 7270100 6418300 7571700 10189000 8378400 14037000 758720 15251000 9456600 15137000 11696000 7792700 6898700 7382400 9712700 3 3 2 3 3 3 3 3 3 3 3 11930000 20154000 99609 19855000 13157000 10951000 13725000 9780200 8660000 10400000 13710000 11108000 18805000 1003500 20143000 12629000 11679000 13735000 10021000 9210900 10132000 13069000 4 4 3 4 4 4 4 4 4 4 4 4320300000 2306900000 2013500000 9431 2788 8775 50382;50383;50384;50385;50386;50387 60938;60939;60940;60941;60942;60943;60944;60945 60939 8 IRCEEEDVEMSEDAYTVLTR Oxidation (M) 2460.0785 0.078469195 3221 Q9Y230;Q9Y230-2 RUVBL2 RuvB-like 2 yes no 0 0 1 1 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 56.981 56.831 3 1.5473E-24 16670 20211116_3428_TMUAki_TMT10x_P_F1 171.79 161.24 8727800 14614000 189650 13734000 11090000 17865000 11285000 15239000 15064000 13790000 13373000 8126600 13633000 777820 14135000 10640000 17886000 11554000 15583000 15099000 13528000 12953000 5 5 2 5 5 5 5 5 5 5 5 5063900 8142300 17062 7634200 6949100 13773000 7620400 8607400 8683000 7341800 7391000 4714100 7595800 328770 7915900 6672400 13537000 7727500 8974300 8741100 7222500 7169800 3 3 1 3 3 3 3 3 3 3 3 3663900 6471700 172580 6099800 4140600 4091600 3664800 6631500 6380700 6448300 5982000 3412500 6037400 449050 6219000 3967300 4349200 3826400 6608800 6358300 6305300 5782900 2 2 1 2 2 2 2 2 2 2 2 2000900000 1040600000 960250000 9432 3221 8776 50388;50389;50390 60946;60947;60948;60949;60950;60951 60946 3211 6 IRCEEEDVEMSEDAYTVLTR Unmodified 2444.0836 0.083554572 3221 Q9Y230;Q9Y230-2 RUVBL2 RuvB-like 2 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 65.484 65.365 3 2.2033E-41 22317 20211116_3439_TMUAki_TMT10x_S_F1 203.71 198.5 24735000 37323000 347420 34591000 25231000 26259000 28086000 12568000 11212000 14332000 26875000 23028000 34816000 1718500 35356000 24242000 26957000 27817000 13522000 12700000 13925000 25440000 4 4 1 4 4 4 4 4 4 4 4 12861000 16581000 0 16042000 10630000 15971000 13503000 6103800 5843400 6850400 14544000 11970000 15470000 403290 16403000 10224000 16053000 13309000 6726200 6588600 6659700 13761000 2 2 0 2 2 2 2 2 2 2 2 11874000 20742000 347420 18548000 14601000 10288000 14583000 6463900 5368400 7481900 12330000 11058000 19346000 1315200 18954000 14019000 10904000 14508000 6795500 6111700 7265300 11679000 2 2 1 2 2 2 2 2 2 2 2 1334300000 606190000 728100000 9433 3221 8776 50391;50392 60952;60953;60954;60955 60954 4 IRDEMVATEQER Oxidation (M) 1491.6988 0.69875596 697 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 1 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 28.981 28.875 3 4.2389E-09 7115 20211116_3429_TMUAki_TMT10x_P_F2 151.3 127.23 473940 815830 3195 812260 866390 796470 594390 409370 394680 389330 695900 441310 761240 47519 828650 824070 803670 610960 435150 420940 381060 661980 4 4 2 4 4 4 4 4 4 4 4 406240 706440 3195 691750 782920 715460 504650 341750 313780 321570 588000 378270 659130 41709 707090 743890 719000 520530 365720 337300 314900 558730 3 3 2 3 3 3 3 3 3 3 3 67705 109380 0 120510 83467 81017 89745 67616 80900 67753 107900 63040 102110 5809.6 121560 80188 84670 90430 69428 83647 66166 103250 1 1 0 1 1 1 1 1 1 1 1 79580000 59471000 20109000 9434 697 8777 50393;50394;50395;50396 60956;60957;60958 60957 780 3 IRDEMVATEQER Unmodified 1475.7038 0.70384134 697 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 33.795 33.682 3 8.8532E-12 8969 20211116_3429_TMUAki_TMT10x_P_F2 162.26 137.4 1733800 2692500 25066 3012600 2771100 1903800 1887300 1287900 1406800 1177900 2051900 1614500 2513600 174720 3034200 2635900 1994000 1945700 1337300 1475100 1155000 1959400 3 3 2 3 3 3 3 3 3 3 3 810840 1175400 12555 1292200 1707300 1192500 921320 529270 567900 454930 923440 755060 1097200 91480 1308500 1618100 1206100 964700 569370 605820 447380 879800 1 1 1 1 1 1 1 1 1 1 1 922970 1517100 12512 1720500 1063800 711280 966010 758670 838880 722990 1128500 859420 1416400 83239 1725700 1017900 787920 981040 767900 869250 707580 1079600 2 2 1 2 2 2 2 2 2 2 2 131710000 104310000 27405000 9435 697 8777 50397;50398;50399;50400 60959;60960;60961 60959 3 IRDPNQGGKDITEEIMSGAR Unmodified 2186.075 0.074979217 1511 Q04637;Q04637-3;Q04637-8;Q04637-5;Q04637-4;Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 2 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 50.936 51.105 4 1.2772E-12 14276 20211116_3445_TMUAki_TMT10x_S_F6 128.8 114.49 7703800 12531000 75639 14290000 12745000 13352000 9126900 8955100 8230700 8254600 10454000 7173400 11700000 755020 14440000 12133000 13561000 9419300 9305900 8491400 8090800 10015000 3 3 2 3 3 3 3 3 3 3 3 4754400 7127600 52169 8568600 9773500 10853000 6739100 5785300 5440100 5448900 6293700 4427000 6656200 488300 8673800 9296600 10802000 6954300 6127800 5621500 5335500 6044800 2 2 1 2 2 2 2 2 2 2 2 2949400 5403700 23471 5721400 2972000 2498100 2387800 3169900 2790700 2805700 4160000 2746400 5043400 266720 5766100 2836400 2758800 2465000 3178100 2870000 2755200 3970600 1 1 1 1 1 1 1 1 1 1 1 879010000 374040000 504970000 9436 1511 8778 50401;50402 60962;60963;60964 60964 3 IRDPNQGGKDITEEIMSGAR Oxidation (M) 2202.0699 0.069893839 1511 Q04637;Q04637-3;Q04637-8;Q04637-5;Q04637-4;Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 1 2 By MS/MS 4.5 0.5 1 1 2 41.976 42.144 4 7.0253E-05 10347 20211116_3444_TMUAki_TMT10x_S_F5 73.809 58.881 2993500 5596500 12589 5904500 2475300 2649800 1910200 7123500 7208700 5760600 5720200 2787200 5223200 236050 5953100 2358900 3000800 2131100 6976100 7048900 5682300 5564100 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2993500 5596500 12589 5904500 2475300 2649800 1910200 7123500 7208700 5760600 5720200 2787200 5223200 236050 5953100 2358900 3000800 2131100 6976100 7048900 5682300 5564100 3 3 2 3 3 3 3 3 3 3 3 345530000 0 345530000 9437 1511 8778 50403;50404 60965;60966;60967 60967 2049 3 IRDSAGQK Unmodified 873.46683 0.46682918 1170 P52209;P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 1 By MS/MS 5 0 1 1 26.85 26.776 3 0.0013257 5439 20211116_3433_TMUAki_TMT10x_P_F5 108.81 52.686 233710 338980 0 281070 209240 322140 199020 154650 174450 153940 243120 217590 316080 16543 291450 200210 321880 201650 165670 180980 150380 232410 1 1 0 1 1 1 1 1 1 1 1 233710 338980 0 281070 209240 322140 199020 154650 174450 153940 243120 217590 316080 16543 291450 200210 321880 201650 165670 180980 150380 232410 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5431000 5431000 0 9438 1170 8779 50405 60968 60968 1 IRDTQLER Unmodified 1029.5567 0.55670682 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4;Q7Z4S6-6;O75037;O75037-2;O75037-3;O75037-4 KIF21A;KIF21B Kinesin-like protein KIF21A;Kinesin-like protein KIF21B yes no 0 0 0 1 By MS/MS 3 0 1 1 29.317 29.044 3 0.012131 8724 20211116_3441_TMUAki_TMT10x_S_F3 69.375 23.041 167830 261930 0 234800 165510 178230 229500 134800 150420 134370 207010 156250 244300 12065 240600 160190 184080 227000 139240 158490 131250 197950 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 167830 261930 0 234800 165510 178230 229500 134800 150420 134370 207010 156250 244300 12065 240600 160190 184080 227000 139240 158490 131250 197950 1 1 0 1 1 1 1 1 1 1 1 6969000 0 6969000 9439 2082 8780 50406 60969 60969 1 IRDTQLERDQVLQNLGSVESYSEEK Unmodified 2935.4523 0.45230791 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4;Q7Z4S6-6 KIF21A Kinesin-like protein KIF21A yes no 0 0 0 2 By MS/MS By MS/MS 5 1 1 1 1 1 61.142 61.099 4 3.3186E-29 19393 20211116_3442_TMUAki_TMT10x_S_F4 164.79 146.73 8995800 15308000 66214 15356000 13031000 11708000 9048500 12223000 11418000 10758000 12435000 8376300 14285000 839240 15608000 12397000 12164000 9459900 12358000 11549000 10567000 11964000 4 4 3 4 4 4 4 4 4 4 4 1838300 2971100 0 2899800 2814900 4291700 2406300 2693300 2466800 2261700 2475000 1711500 2772100 141290 2984100 2687200 4250300 2464000 2806100 2507200 2226600 2387300 1 1 0 1 1 1 1 1 1 1 1 7157500 12337000 66214 12456000 10216000 7416500 6642200 9530200 8951600 8496600 9960200 6664800 11512000 697950 12624000 9709600 7913800 6995800 9552000 9041400 8340800 9577000 3 3 3 3 3 3 3 3 3 3 3 1444700000 450880000 993820000 9440 2082 8781 50407;50408 60970;60971;60972;60973 60972 4 IREDCCPGKPLNVFR Unmodified 1859.9135 0.91345696 3064 Q9P2J5;Q9P2J5-2;Q9P2J5-3 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 0 2 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 43.718 43.67 4 2.4802E-33 11377 20211116_3428_TMUAki_TMT10x_P_F1 224.67 201.19 14492000 22374000 120590 31295000 33957000 30609000 19734000 17182000 18098000 15515000 20656000 13494000 20911000 1503100 31286000 32204000 30923000 20710000 18098000 18574000 15222000 19847000 8 8 5 8 8 8 8 8 8 8 8 10569000 16070000 68775 23207000 31010000 27843000 17002000 12126000 12819000 10919000 14873000 9840700 15022000 1162100 23240000 29381000 27726000 17849000 13086000 13297000 10714000 14284000 4 4 2 4 4 4 4 4 4 4 4 3923100 6304000 51814 8088700 2947400 2766100 2731300 5056500 5279100 4596400 5782500 3653000 5889000 341010 8046100 2822600 3197700 2860700 5011700 5276900 4508000 5562600 4 4 3 4 4 4 4 4 4 4 4 1265200000 869780000 395440000 9441 3064 8782 50409;50410;50411;50412;50413;50414 60974;60975;60976;60977;60978;60979;60980;60981 60974 8 IREDLPNLESSEETEQINK Unmodified 2243.0917 0.091734718 2541 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 0 0 0 1 By MS/MS By MS/MS 2.67 0.745 3 2 1 3 3 53.467 53.273 3;4 1.9487E-58 18456 20211116_3441_TMUAki_TMT10x_S_F3 251.75 227.74 12765000 21423000 15144 26533000 17720000 21454000 13683000 14096000 16634000 13746000 16842000 11884000 20009000 962960 26631000 16879000 22004000 14182000 14693000 16800000 13439000 16240000 7 7 2 7 7 7 7 7 7 7 7 7384200 12352000 15144 15510000 14838000 18378000 11371000 8503000 9696000 8147500 10156000 6874900 11537000 653090 15643000 14136000 18324000 11663000 9133000 9953700 7971900 9783200 4 4 2 4 4 4 4 4 4 4 4 5380800 9070900 0 11023000 2882100 3076300 2312200 5593100 6937600 5598000 6685300 5009200 8471400 309870 10988000 2742600 3680600 2518400 5559800 6846400 5467100 6456900 3 3 0 3 3 3 3 3 3 3 3 1849300000 1030500000 818750000 9442 2541 8783 50415;50416;50417;50418;50419;50420 60982;60983;60984;60985;60986;60987;60988 60987 7 IREEFPDR Unmodified 1060.5302 0.53015772 488;2673 P04350;Q9BUF5 TUBB4A;TUBB6 Tubulin beta-4A chain;Tubulin beta-6 chain no no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 33.134 32.895 3 0.00091103 8681 20211116_3429_TMUAki_TMT10x_P_F2 120.45 79.57 540390 839660 0 820770 619550 532590 635370 557440 599420 518860 715740 503080 783420 35706 834350 593790 560900 642550 564360 615510 508340 686850 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 540390 839660 0 820770 619550 532590 635370 557440 599420 518860 715740 503080 783420 35706 834350 593790 560900 642550 564360 615510 508340 686850 1 1 0 1 1 1 1 1 1 1 1 26850000 0 26850000 9443 488;2673 8784 50421;50422 60989;60990 60989 2 IREEYPDR Unmodified 1076.5251 0.52507234 1418;1668;2689;539;1889 P07437;A6NNZ2;P68371;Q13885;Q3ZCM7;Q9BVA1 TUBB;TUBB4B;TUBB2A;TUBB8;TUBB2B Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-8 chain;Tubulin beta-2B chain no no 0 0 0 1 By MS/MS By MS/MS 2.6 1.36 4 4 3 2 2 9 6 28.243 28.189 2;3 0.00024711 6277 20211116_3433_TMUAki_TMT10x_P_F5 156.83 96.39 13825000 22799000 119360 19546000 18774000 18783000 16366000 11439000 13696000 11470000 16334000 12873000 21262000 1275500 20159000 17945000 19017000 16644000 12002000 14144000 11201000 15675000 15 15 5 15 15 15 15 15 15 15 15 7234100 11624000 46045 10094000 10986000 12227000 8065600 6047100 7152900 6062100 8516200 6735700 10841000 661830 10437000 10461000 12186000 8305800 6460600 7365200 5919900 8173100 9 9 3 9 9 9 9 9 9 9 9 6590900 11175000 73319 9452600 7787700 6556300 8300600 5391700 6542900 5407500 7817500 6137100 10421000 613720 9721500 7483400 6831600 8338500 5541200 6778500 5280600 7501800 6 6 2 6 6 6 6 6 6 6 6 4290000000 2510200000 1779900000 9444 539;1418;1668;1889;2689 8785 50423;50424;50425;50426;50427;50428;50429;50430;50431;50432;50433;50434;50435;50436;50437 60991;60992;60993;60994;60995;60996;60997;60998;60999;61000;61001;61002;61003;61004;61005 60998 15 IREEYPDRIMNTFSVMPSPK 2 Oxidation (M) 2441.1719 0.17191607 1668;2689 Q13885;Q9BVA1 TUBB2A;TUBB2B Tubulin beta-2A chain;Tubulin beta-2B chain no no 0 0 2 2 By MS/MS 7 0 1 1 47.379 47.861 4 0.011946 14986 20211116_3446_TMUAki_TMT10x_S_F7 47.047 34.614 1359100 2564100 0 2342900 1565700 1218100 960250 2998300 3244700 2238500 2244600 1265300 2391800 100080 2389000 1485000 1350400 1076400 2935900 3165500 2217600 2196200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1359100 2564100 0 2342900 1565700 1218100 960250 2998300 3244700 2238500 2244600 1265300 2391800 100080 2389000 1485000 1350400 1076400 2935900 3165500 2217600 2196200 1 1 0 1 1 1 1 1 1 1 1 185250000 0 185250000 9445 1668;2689 8786 50438 61006 61006 2239;2240 1 IREEYPDRIMNTFSVVPSPK Oxidation (M) 2393.2049 0.20493076 1418;539 P07437;P68371 TUBB;TUBB4B Tubulin beta chain;Tubulin beta-4B chain no no 0 0 1 2 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 52.556 52.858 4 2.4636E-13 16916 20211116_3446_TMUAki_TMT10x_S_F7 137.13 51.924 8249300 15396000 394730 13987000 14424000 18887000 11164000 24869000 25555000 15383000 15802000 7683800 14361000 1138300 14442000 13773000 19073000 11940000 24700000 25022000 15414000 15546000 4 4 4 4 4 4 4 4 4 4 4 4650100 9439800 308910 8655400 7459300 15222000 7826000 15823000 16557000 9366700 9510500 4332000 8805400 712760 8983500 7180200 15116000 8189400 15864000 16212000 9414000 9392600 2 2 2 2 2 2 2 2 2 2 2 3599200 5956600 85823 5331900 6965100 3664800 3338100 9046800 8997900 6015800 6291800 3351800 5555900 425520 5458600 6592500 3957200 3750800 8835800 8810200 6000200 6153200 2 2 2 2 2 2 2 2 2 2 2 9463500000 4170500000 5293000000 9446 539;1418 8787 50439;50440;50441;50442 61007;61008;61009;61010 61009 466 4 IREEYPDRIMNTFSVVPSPK Unmodified 2377.21 0.21001614 1418;539 P07437;P68371 TUBB;TUBB4B Tubulin beta chain;Tubulin beta-4B chain no no 0 0 0 2 By MS/MS By MS/MS 8 0 2 1 1 60.273 60.367 4 1.4118E-18 17816 20211116_3447_TMUAki_TMT10x_S_F8 157.51 39.858 27022000 43272000 310900 43560000 54346000 36196000 27260000 31868000 29258000 29033000 35681000 25161000 40378000 2791300 44308000 51439000 37231000 29129000 32535000 29905000 28472000 34221000 6 6 3 6 6 6 6 6 6 6 6 11185000 16736000 225160 18596000 14931000 21706000 13434000 12991000 12582000 11980000 14761000 10416000 15624000 1183600 18886000 14292000 21725000 13678000 13618000 12915000 11742000 14172000 2 2 1 2 2 2 2 2 2 2 2 15837000 26536000 85744 24964000 39415000 14490000 13826000 18877000 16676000 17054000 20919000 14745000 24755000 1607600 25422000 37147000 15506000 15451000 18917000 16991000 16730000 20049000 4 4 2 4 4 4 4 4 4 4 4 1918000000 1018900000 899140000 9447 539;1418 8787 50443;50444 61011;61012;61013;61014;61015;61016 61015 6 IREFEVETER Unmodified 1306.6517 0.65172941 785 P23508;P23508-2 MCC Colorectal mutant cancer protein yes no 0 0 0 1 By MS/MS 2 0.816 1 1 1 3 39.018 38.918 3 0.021457 12629 20211116_3441_TMUAki_TMT10x_S_F3 57.52 38.249 2457900 3740000 22426 4287100 2271400 1892800 2077500 2507100 2598500 2286800 2904100 2288600 3491900 207100 4299100 2173400 2089800 2133500 2511400 2631500 2242500 2792000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2457900 3740000 22426 4287100 2271400 1892800 2077500 2507100 2598500 2286800 2904100 2288600 3491900 207100 4299100 2173400 2089800 2133500 2511400 2631500 2242500 2792000 2 2 1 2 2 2 2 2 2 2 2 56662000 0 56662000 9448 785 8788 50445;50446;50447 61017;61018 61017 2 IREIADGLCLEVEGK Unmodified 1700.8767 0.87672033 656 P13693 TPT1 Translationally-controlled tumor protein yes yes 0 0 0 1 By MS/MS By MS/MS 4.35 1.68 2 1 2 5 5 3 2 9 11 67.184 67.167 2;3;4 1.823E-35 21927 20211116_3442_TMUAki_TMT10x_S_F4 205.62 169.04 211790000 335410000 4039600 346350000 246020000 305530000 240320000 186480000 175710000 192850000 244750000 197220000 313010000 21358000 351950000 235970000 311090000 242060000 195800000 184040000 188080000 233970000 29 29 22 29 29 29 29 29 29 29 29 123610000 190280000 2199300 199120000 147100000 226240000 152580000 108370000 103960000 111670000 140790000 115100000 177580000 12240000 202910000 141300000 226160000 152980000 116230000 109190000 108920000 134670000 14 14 8 14 14 14 14 14 14 14 14 88179000 145130000 1840300 147230000 98920000 79285000 87738000 78115000 71756000 81182000 103960000 82116000 135430000 9117900 149040000 94675000 84935000 89086000 79573000 74841000 79161000 99292000 15 15 14 15 15 15 15 15 15 15 15 28033000000 15212000000 12821000000 9449 656 8789 50448;50449;50450;50451;50452;50453;50454;50455;50456;50457;50458;50459;50460;50461;50462;50463;50464;50465;50466;50467 61019;61020;61021;61022;61023;61024;61025;61026;61027;61028;61029;61030;61031;61032;61033;61034;61035;61036;61037;61038;61039;61040;61041;61042;61043;61044;61045;61046;61047;61048 61039 30 IRELGSLPQEAFEK Unmodified 1615.857 0.85697116 3219 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 1 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 58.647 58.74 3 9.0378E-05 17445 20211116_3445_TMUAki_TMT10x_S_F6 93.478 68.783 26788000 43311000 447320 44792000 35596000 45036000 32658000 28170000 25697000 27185000 32689000 24946000 40419000 2761200 45594000 34084000 45485000 33065000 29463000 26695000 26590000 31317000 4 4 4 4 4 4 4 4 4 4 4 18448000 29006000 392630 29870000 24859000 36452000 22500000 20092000 17805000 19136000 22121000 17180000 27069000 1985200 30509000 23800000 36361000 22801000 21225000 18472000 18729000 21206000 3 3 3 3 3 3 3 3 3 3 3 8339900 14305000 54694 14923000 10736000 8583800 10158000 8077800 7891900 8048400 10568000 7765600 13350000 775970 15085000 10283000 9124200 10264000 8237600 8222700 7861700 10112000 1 1 1 1 1 1 1 1 1 1 1 2004600000 1114600000 890000000 9450 3219 8790 50468;50469;50470 61049;61050;61051;61052 61052 4 IRELTAVVQK Unmodified 1155.6976 0.69755739 783 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 1 By MS/MS By MS/MS 2.8 2.64 2 2 1 2 3 49.541 49.375 3 1.373E-06 14007 20211116_3440_TMUAki_TMT10x_S_F2 150.09 124.16 12432000 18923000 32634 19563000 14935000 16132000 12054000 10987000 13116000 57424000 14840000 11575000 17660000 971800 19861000 14242000 16530000 12410000 12821000 13358000 54170000 14262000 5 5 2 5 5 5 5 5 5 5 5 5570500 8166500 32634 8623900 9022100 10337000 5620000 5130400 5951800 13923000 6555800 5186900 7621900 540590 8791100 8567300 10308000 5888800 5742100 6061900 13236000 6305400 2 2 2 2 2 2 2 2 2 2 2 6861800 10757000 0 10939000 5913000 5795000 6434000 5857000 7163800 43501000 8283900 6388000 10038000 431210 11070000 5674600 6222300 6521600 7078700 7295700 40935000 7956500 3 3 0 3 3 3 3 3 3 3 3 1794300000 832620000 961650000 9451 783 8791 50471;50472;50473;50474;50475 61053;61054;61055;61056;61057;61058 61057 6 IRELVPESQAYMDLLAFER Oxidation (M) 2295.1569 0.15691793 2475 Q96GM5;Q96GM5-2;Q92925;Q6STE5;Q6STE5-2;Q92925-3;Q92925-2 SMARCD1;SMARCD2;SMARCD3 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 yes no 0 0 1 1 By matching By MS/MS 5 0.816 1 1 1 1 2 77.028 77.029 3 7.4063E-08 24923 20211116_3445_TMUAki_TMT10x_S_F6 102.07 90.628 1983100 3870100 24513 3097700 3224800 3294800 2851300 3277700 3050800 3129400 3177300 1846600 3608300 204650 3217600 3084200 3344000 2917900 3329000 3099400 3062500 3061100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1983100 3870100 24513 3097700 3224800 3294800 2851300 3277700 3050800 3129400 3177300 1846600 3608300 204650 3217600 3084200 3344000 2917900 3329000 3099400 3062500 3061100 1 1 1 1 1 1 1 1 1 1 1 1755500000 556350000 1199200000 9452 2475 8792 50476;50477;50478 61059 61059 2766 1 IRESFFR Unmodified 953.5083 0.50830006 144 O14949 UQCRQ Cytochrome b-c1 complex subunit 8 yes yes 0 0 0 1 By MS/MS By MS/MS 4 3.29 2 1 2 2 3 39.398 39.47 3 0.0011657 11891 20211116_3439_TMUAki_TMT10x_S_F1 128.69 72.676 1724300 2677200 26035 3247800 2588300 2128000 1829200 1972800 1866400 1780300 2333100 1605700 2500200 179320 3256300 2464300 2233400 1896300 2007900 1913700 1746700 2236200 4 4 4 4 4 4 4 4 4 4 4 564510 857680 8753.8 1065300 1472600 1090000 716580 585740 580570 576210 706660 525680 801090 67678 1072500 1393500 1097500 762180 620700 601060 563150 677780 1 1 1 1 1 1 1 1 1 1 1 1159800 1819500 17281 2182500 1115700 1038000 1112600 1387100 1285800 1204100 1626400 1080000 1699100 111650 2183800 1070800 1135900 1134100 1387200 1312600 1183500 1558400 3 3 3 3 3 3 3 3 3 3 3 207430000 98562000 108870000 9453 144 8793 50479;50480;50481;50482;50483 61060;61061;61062;61063;61064 61062 5 IRETGERPSNEEIMR Oxidation (M) 1831.8847 0.88465925 412 O95202 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes yes 0 0 1 2 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 27.85 27.59 4 0.018834 8147 20211116_3441_TMUAki_TMT10x_S_F3 48.177 19.274 151080 225250 6735.1 176660 173010 275860 157910 128270 166400 125950 191180 140710 210000 18555 185140 165880 271590 161230 137790 169790 123110 183660 2 2 1 2 2 2 2 2 2 2 2 92768 136180 6735.1 111220 103800 172410 100190 69250 99587 71994 112510 86426 126970 14123 116140 99850 169550 101790 75697 101800 70200 108140 1 1 1 1 1 1 1 1 1 1 1 58310 89071 0 65436 69202 103450 57725 59016 66816 53958 78665 54288 83025 4432.3 68994 66030 102040 59435 62094 67996 52907 75519 1 1 0 1 1 1 1 1 1 1 1 9535000 3250400 6284600 9454 412 8794 50484;50485 61065 61065 309 1 IRETTDFKVDTK Unmodified 1451.762 0.76200815 328 O75369;O75369-8;O75369-6;O75369-3;O75369-2;O75369-9;O75369-5;O75369-4;O75369-7 FLNB Filamin-B yes no 0 0 0 2 By MS/MS 6 0 1 1 39.156 39.319 4 0.094623 9562 20211116_3445_TMUAki_TMT10x_S_F6 40.941 19.392 167250 296930 4517.6 295370 182320 158470 172450 194450 196390 183050 220290 155760 277070 18288 299390 174840 170690 176180 195550 199590 179250 211770 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 167250 296930 4517.6 295370 182320 158470 172450 194450 196390 183050 220290 155760 277070 18288 299390 174840 170690 176180 195550 199590 179250 211770 1 1 1 1 1 1 1 1 1 1 1 9906200 0 9906200 9455 328 8795 50486 61066 61066 1 IREYFGGFGEVESIELPMDNK Oxidation (M) 2445.1522 0.15222649 1675 Q14103;Q14103-3;Q14103-4;Q14103-2 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes no 0 0 1 1 By MS/MS By MS/MS 4.67 2.01 2 2 3 4 4 4 3 2 12 12 75.245 75.216 3;4 6.9639E-35 25098 20211116_3442_TMUAki_TMT10x_S_F4 188.56 166.76 165660000 287970000 2581700 239290000 175550000 300620000 205100000 226770000 246110000 247190000 226680000 154260000 268520000 13748000 248470000 169200000 300810000 207770000 234900000 247890000 240570000 219270000 50 50 35 50 50 50 50 50 50 50 50 97719000 165950000 1595500 139500000 90530000 208950000 109660000 130840000 141210000 141690000 131590000 90995000 154750000 7516800 145220000 87365000 206820000 111210000 137300000 141940000 137930000 127240000 25 25 18 25 25 25 25 25 25 25 25 67938000 122020000 986250 99790000 85024000 91673000 95442000 95927000 104900000 105500000 95082000 63262000 113770000 6231300 103250000 81830000 93987000 96559000 97604000 105960000 102640000 92026000 25 25 17 25 25 25 25 25 25 25 25 41241000000 21734000000 19507000000 9456 1675 8796 50487;50488;50489;50490;50491;50492;50493;50494;50495;50496;50497;50498;50499;50500;50501;50502;50503;50504;50505;50506;50507;50508;50509;50510 61067;61068;61069;61070;61071;61072;61073;61074;61075;61076;61077;61078;61079;61080;61081;61082;61083;61084;61085;61086;61087;61088;61089;61090;61091;61092;61093;61094;61095;61096;61097;61098;61099;61100;61101;61102;61103;61104;61105;61106;61107;61108;61109;61110;61111;61112;61113;61114;61115;61116 61101 2242 50 IREYFGGFGEVESIELPMDNK Unmodified 2429.1573 0.15731186 1675 Q14103;Q14103-3;Q14103-4;Q14103-2 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes no 0 0 0 1 By MS/MS By MS/MS 5.83 1.07 1 1 2 2 3 3 77.629 77.648 3 2.348E-19 25156 20211116_3445_TMUAki_TMT10x_S_F6 151.58 134.7 24183000 38989000 502280 37176000 24152000 34257000 29644000 18888000 16555000 20254000 27690000 22521000 36374000 2450600 38010000 23325000 34733000 29377000 20020000 17809000 19725000 26366000 6 6 5 6 6 6 6 6 6 6 6 16060000 25940000 219670 23972000 14517000 25599000 18630000 12592000 10895000 13153000 18215000 14955000 24197000 1492600 24618000 14035000 25686000 18443000 13476000 11682000 12822000 17345000 4 4 3 4 4 4 4 4 4 4 4 8123200 13049000 282610 13204000 9634500 8657600 11014000 6296100 5659400 7101700 9474900 7565600 12176000 958020 13392000 9289800 9047200 10934000 6544700 6127200 6902700 9022000 2 2 2 2 2 2 2 2 2 2 2 4771800000 2761600000 2010200000 9457 1675 8796 50511;50512;50513;50514;50515;50516 61117;61118;61119;61120;61121;61122;61123 61122 7 IREYFYGFR Unmodified 1249.6244 0.62439245 2384 Q92989;Q92989-2 CLP1 Polyribonucleotide 5'-hydroxyl-kinase Clp1 yes no 0 0 0 1 By MS/MS 3 0 1 1 54.011 53.837 3 0.0015712 17624 20211116_3430_TMUAki_TMT10x_P_F3 78.61 59.632 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9458 2384 8797 50517 61124 61124 1 IRFQESEERPK Unmodified 1417.7314 0.73137672 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 2 By MS/MS 5 0 1 1 32.175 32.115 4 4.9785E-16 7534 20211116_3433_TMUAki_TMT10x_P_F5 210.15 168.05 1244600 1751000 8301.9 2405400 2187300 1525700 1025900 545340 865570 713810 1301500 1158900 1636300 124130 2394600 2068600 1586500 1096300 608990 903050 690210 1242100 1 1 1 1 1 1 1 1 1 1 1 1244600 1751000 8301.9 2405400 2187300 1525700 1025900 545340 865570 713810 1301500 1158900 1636300 124130 2394600 2068600 1586500 1096300 608990 903050 690210 1242100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 141190000 141190000 0 9459 916 8798 50518 61125 61125 1 IRGEEPAVTEETLCVGLAR Unmodified 2099.0681 0.068102925 2793 Q9H2P9;Q9H2P9-3;Q9H2P9-2;Q9H2P9-4;Q9H2P9-5 DPH5 Diphthine synthase yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 52.882 52.806 3 4.9971E-58 17201 20211116_3430_TMUAki_TMT10x_P_F3 242.59 219.56 10924000 17304000 291060 19751000 13338000 15152000 11131000 12500000 12217000 11132000 14724000 10173000 16155000 1172200 19908000 12749000 15660000 11439000 12802000 12470000 10928000 14127000 6 6 4 6 6 6 6 6 6 6 6 4143600 6336000 116310 7314500 6427100 9641400 5341000 4785900 4762900 4515000 5824900 3858900 5915900 475270 7427700 6141800 9569400 5456500 5102900 4908400 4420700 5586200 2 2 1 2 2 2 2 2 2 2 2 6780400 10968000 174750 12437000 6910900 5510500 5789800 7713700 7454400 6617100 8899500 6314300 10240000 696920 12480000 6606900 6090400 5983000 7698700 7562000 6507800 8540300 4 4 3 4 4 4 4 4 4 4 4 2349900000 976000000 1373900000 9460 2793 8799 50519;50520;50521;50522 61126;61127;61128;61129;61130;61131 61126 6 IRGETLGIIGLGR Unmodified 1353.8092 0.80923311 1624 Q13363;Q13363-2 CTBP1 C-terminal-binding protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 54.891 54.674 3 1.5496E-24 19004 20211116_3441_TMUAki_TMT10x_S_F3 195.94 156.28 5301300 8849700 105580 8942900 7747700 8953000 6371700 8513600 7603400 7409700 7205200 4936500 8258000 534930 9116800 7398300 9110200 6573200 8645200 7667200 7282200 6962900 4 4 3 4 4 4 4 4 4 4 4 2824200 4520300 40160 4854800 4418100 6299800 3907600 4058200 3700500 3715600 3500600 2629600 4219200 256660 4950700 4223500 6278300 3984000 4229000 3766500 3643000 3383000 2 2 1 2 2 2 2 2 2 2 2 2477100 4329400 65418 4088100 3329600 2653100 2464100 4455400 3903000 3694100 3704600 2307000 4038900 278280 4166100 3174800 2831900 2589200 4416200 3900600 3639200 3579900 2 2 2 2 2 2 2 2 2 2 2 1618100000 1165900000 452230000 9461 1624 8800 50523;50524;50525;50526 61132;61133;61134;61135;61136 61136 5 IRGETLGLIGFGR Unmodified 1387.7936 0.79358304 1259 P56545;P56545-2;P56545-3 CTBP2 C-terminal-binding protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 58.318 58.17 3 1.8578E-26 18150 20211116_3442_TMUAki_TMT10x_S_F4 236.92 201.62 14548000 21606000 527050 23208000 18368000 22917000 16786000 17442000 14656000 15951000 19045000 13549000 20167000 1750800 23559000 17604000 23241000 17043000 17965000 15159000 15640000 18236000 4 4 4 4 4 4 4 4 4 4 4 8910400 12433000 312690 13863000 11625000 17165000 10468000 10746000 8967800 9639100 11463000 8298800 11606000 1068200 14091000 11136000 17138000 10632000 11217000 9277400 9459600 10981000 2 2 2 2 2 2 2 2 2 2 2 5637600 9173600 214360 9345600 6743400 5752100 6317400 6695800 5688500 6312000 7581900 5250700 8560600 682660 9468200 6468200 6102700 6410800 6748700 5881700 6180400 7255400 2 2 2 2 2 2 2 2 2 2 2 2514600000 1326700000 1187800000 9462 1259 8801 50527;50528;50529;50530 61137;61138;61139;61140 61140 4 IRGINGVSPK Unmodified 1039.6138 0.61382777 716 P18124 RPL7 60S ribosomal protein L7 yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 36.176 35.937 3 0.00061837 11346 20211116_3441_TMUAki_TMT10x_S_F3 93.843 66.842 2154300 3444300 19521 3605600 3869900 3403300 2605400 2128300 2309900 1792900 2698600 2006000 3214500 220820 3663900 3680000 3450900 2699800 2218200 2376700 1764800 2591200 3 3 3 3 3 3 3 3 3 3 3 1561500 2428000 9426.7 2611900 3291400 2974400 1964700 1538200 1681700 1257300 1957400 1454000 2266200 162480 2657000 3123100 2975500 2053500 1628000 1733000 1239500 1879700 2 2 2 2 2 2 2 2 2 2 2 592710 1016300 10095 993700 578510 428830 640710 590030 628200 535610 741270 551950 948260 58349 1006900 556870 475330 646260 590140 643640 525340 711570 1 1 1 1 1 1 1 1 1 1 1 178300000 45086000 133210000 9463 716 8802 50531;50532 61141;61142;61143 61143 3 IRGPEESQPPQLYAADEEEAPGTRDPTR Unmodified 3108.4748 0.47483427 1925 Q5RKV6 EXOSC6 Exosome complex component MTR3 yes yes 0 0 0 2 By MS/MS By MS/MS 2.4 1.02 1 2 1 1 3 2 41.894 41.8 4 1.8994E-92 10857 20211116_3440_TMUAki_TMT10x_S_F2 259.58 247.61 2693200 4758200 67342 5357100 4298600 5550700 3539400 4108300 4379000 3648000 3494600 2508100 4442200 300200 5425700 4106200 5610300 3655900 4236000 4386700 3581800 3398500 7 7 4 7 7 7 7 7 7 7 7 1894800 3364700 66387 3802600 3786800 4919900 3066800 3025100 3075400 2478800 2461400 1764700 3141200 243900 3865000 3616800 4900600 3148700 3155000 3106600 2443400 2393400 4 4 3 4 4 4 4 4 4 4 4 798380 1393500 955.65 1554500 511780 630790 472640 1083100 1303500 1169200 1033200 743330 1300900 56300 1560700 489350 709750 507180 1081000 1280200 1138300 1005000 3 3 1 3 3 3 3 3 3 3 3 2347900000 1551200000 796720000 9464 1925 8803 50533;50534;50535;50536;50537 61144;61145;61146;61147;61148;61149;61150 61149 7 IRGTVGPK Unmodified 826.50249 0.5024864 2675 Q9BUJ2;Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2-3 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 0 0 0 1 By MS/MS 2 0 1 1 30.659 30.429 3 0.049069 7716 20211116_3429_TMUAki_TMT10x_P_F2 49.85 33.696 1114600 1678400 0 1329200 1101200 1639000 1108200 729120 845900 788730 1120200 1037700 1564800 85518 1385300 1055600 1630200 1115600 789030 881770 767860 1072100 1 1 0 1 1 1 1 1 1 1 1 1114600 1678400 0 1329200 1101200 1639000 1108200 729120 845900 788730 1120200 1037700 1564800 85518 1385300 1055600 1630200 1115600 789030 881770 767860 1072100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16767000 16767000 0 9465 2675 8804 50538 61151 61151 1 IRIEDPPR Unmodified 994.55598 0.55597854 1297 P61160;P61160-2 ACTR2 Actin-related protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 32.65 32.503 3 0.012731 7412 20211116_3431_TMUAki_TMT10x_P_F4 68.224 53.08 1880400 2946100 2333.3 2721200 3361200 2433700 2294600 1610500 1664300 1611200 2549100 1750800 2748100 178810 2787700 3196200 2478600 2363800 1679100 1752100 1573600 2431600 2 2 2 2 2 2 2 2 2 2 2 1321000 2081400 402.29 1843200 2746900 1983200 1620500 1135000 1170800 1181800 1858200 1230000 1941300 129860 1899300 2605500 1992700 1688700 1198200 1235200 1152300 1771200 1 1 1 1 1 1 1 1 1 1 1 559370 864630 1931 878050 614350 450490 674050 475540 493500 429430 690910 520840 806840 48945 888420 590690 485870 675010 480850 516960 421300 660380 1 1 1 1 1 1 1 1 1 1 1 74542000 55991000 18551000 9466 1297 8805 50539;50540;50541 61152;61153 61152 2 IRIFDLGR Unmodified 988.5818 0.58179936 827 P27635;Q96L21 RPL10;RPL10L 60S ribosomal protein L10;60S ribosomal protein L10-like yes no 0 0 0 1 By matching By MS/MS 3 0 2 1 1 53.837 53.56 3 0.0011825 18636 20211116_3441_TMUAki_TMT10x_S_F3 112.11 65.949 556940 970640 0 1124900 2000500 1779900 615730 1047100 1675100 836210 856220 518530 906290 61930 1146500 1883000 1756400 729760 1095300 1628700 825370 851310 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 556940 970640 0 1124900 2000500 1779900 615730 1047100 1675100 836210 856220 518530 906290 61930 1146500 1883000 1756400 729760 1095300 1628700 825370 851310 1 1 0 1 1 1 1 1 1 1 1 144410000 76518000 67887000 9467 827 8806 50542;50543 61154 61154 1 IRLDTETEGVPSTAIR Unmodified 1756.9319 0.93192702 797 P24941;P24941-2 CDK2 Cyclin-dependent kinase 2 yes no 0 0 0 1 By MS/MS By MS/MS 3.71 1.03 1 2 2 2 4 3 46.792 46.794 3 1.3345E-44 13453 20211116_3442_TMUAki_TMT10x_S_F4 238.01 198.58 6033900 10410000 134810 12371000 5669800 5332600 5164300 9340400 9583300 8302200 9785600 5619200 9720900 620250 12377000 5431900 5956800 5401600 9263300 9563200 8151100 9433500 4 4 3 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6033900 10410000 134810 12371000 5669800 5332600 5164300 9340400 9583300 8302200 9785600 5619200 9720900 620250 12377000 5431900 5956800 5401600 9263300 9563200 8151100 9433500 4 4 3 4 4 4 4 4 4 4 4 664320000 165710000 498610000 9468 797 8807 50544;50545;50546;50547;50548;50549;50550 61155;61156;61157;61158;61159;61160;61161 61160 7 IRLEETLEQLAK Unmodified 1441.814 0.81404372 763 P22059 OSBP Oxysterol-binding protein 1 yes yes 0 0 0 1 By MS/MS 5 0 1 1 67.524 67.624 3 0.00027936 21857 20211116_3433_TMUAki_TMT10x_P_F5 84.169 50.299 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9469 763 8808 50551 61162 61162 1 IRLESEEEGVPSTAIR Unmodified 1784.9268 0.92684164 517 P06493;P06493-2 CDK1 Cyclin-dependent kinase 1 yes no 0 0 0 1 By MS/MS By MS/MS 2.56 1.07 2 2 3 2 5 4 43.894 43.837 2;3 7.1164E-77 13378 20211116_3430_TMUAki_TMT10x_P_F3 294.95 252.62 21275000 35517000 126690 41338000 36088000 39354000 23878000 30690000 31978000 25368000 30484000 19809000 33163000 1731500 41731000 34292000 40019000 25109000 31482000 32125000 24995000 29453000 13 13 6 13 13 13 13 13 13 13 13 13304000 21093000 75854 23401000 29571000 33097000 18129000 18452000 19310000 15306000 17534000 12386000 19690000 1234500 23855000 28060000 32790000 19024000 19406000 19530000 15078000 16970000 7 7 3 7 7 7 7 7 7 7 7 7971800 14424000 50833 17936000 6517000 6257800 5748700 12238000 12668000 10063000 12949000 7422800 13472000 497060 17875000 6231300 7229800 6085500 12076000 12595000 9917200 12483000 6 6 3 6 6 6 6 6 6 6 6 8550900000 5105100000 3445900000 9470 517 8809 50552;50553;50554;50555;50556;50557;50558;50559;50560 61163;61164;61165;61166;61167;61168;61169;61170;61171;61172;61173;61174;61175;61176 61168 14 IRLQAYHTQTTPLIEYYR Unmodified 2265.1906 0.19060132 1228 P54819;P54819-5;P54819-2;P54819-6 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 0 0 0 1 By MS/MS 3 0 1 1 52.135 51.767 4 1.3972E-05 17901 20211116_3441_TMUAki_TMT10x_S_F3 82.865 70.505 829560 1361900 191.1 1493900 929830 761400 807960 1070900 1064300 1099200 1200500 772410 1271300 70359 1503800 888520 827800 833860 1074000 1076300 1072400 1153900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 829560 1361900 191.1 1493900 929830 761400 807960 1070900 1064300 1099200 1200500 772410 1271300 70359 1503800 888520 827800 833860 1074000 1076300 1072400 1153900 1 1 1 1 1 1 1 1 1 1 1 212770000 0 212770000 9471 1228 8810 50561 61177 61177 1 IRPGEFEQFESTIGFK Unmodified 1883.9418 0.94176342 3239 Q9Y2J2;Q9Y2J2-2;Q9Y2J2-4;Q9Y2J2-3 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed yes no 0 0 0 1 By MS/MS 6 0 1 1 71.644 71.588 3 5.0252E-05 22292 20211116_3434_TMUAki_TMT10x_P_F6 84.41 64.285 2849100 4720800 45089 4637900 2892900 4589700 3340100 2930400 2716900 2958300 3185900 2653200 4404700 278850 4736600 2787800 4641400 3345300 3064000 2807900 2888100 3058800 1 1 1 1 1 1 1 1 1 1 1 2849100 4720800 45089 4637900 2892900 4589700 3340100 2930400 2716900 2958300 3185900 2653200 4404700 278850 4736600 2787800 4641400 3345300 3064000 2807900 2888100 3058800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 420480000 420480000 0 9472 3239 8811 50562 61178 61178 1 IRPGEQEQYESTIGFK Unmodified 1880.9268 0.92684164 617 P11171;P11171-2;P11171-4;P11171-5;P11171-3;P11171-6;P11171-7 EPB41 Protein 4.1 yes no 0 0 0 1 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 48.984 49.139 3 1.4538E-21 13136 20211116_3434_TMUAki_TMT10x_P_F6 174.62 157.93 15562000 26074000 262880 32213000 24016000 27275000 17990000 19148000 19019000 16991000 20305000 14491000 24353000 1653600 32355000 22892000 27908000 18595000 19814000 19349000 16683000 19548000 7 7 7 7 7 7 7 7 7 7 7 10460000 17302000 183160 21290000 20153000 23850000 14532000 13566000 13246000 11680000 13692000 9740500 16159000 1173700 21476000 19194000 23908000 14995000 14255000 13547000 11485000 13194000 5 5 5 5 5 5 5 5 5 5 5 5101800 8772300 79716 10923000 3862500 3425400 3457900 5582700 5772800 5311200 6613700 4750900 8193500 479910 10879000 3698200 4000500 3600300 5559100 5801400 5198400 6354000 2 2 2 2 2 2 2 2 2 2 2 2226600000 1584500000 642080000 9473 617 8812 50563;50564;50565;50566;50567 61179;61180;61181;61182;61183;61184;61185 61183 7 IRPLPEEMLSYAR Oxidation (M) 1589.8236 0.82356254 1486 Q01780;Q01780-2 EXOSC10 Exosome component 10 yes no 0 0 1 1 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 43.892 44.013 3 6.5134E-06 11365 20211116_3445_TMUAki_TMT10x_S_F6 98.253 81.999 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9474 1486 8813 50568;50569;50570 61186;61187;61188 61188 2012 3 IRPLPEEMLSYAR Unmodified 1573.8286 0.82864792 1486 Q01780;Q01780-2 EXOSC10 Exosome component 10 yes no 0 0 0 1 By MS/MS 7.33 0.471 2 1 3 56.534 57.268 3 1.5844E-11 18234 20211116_3435_TMUAki_TMT10x_P_F7 143.81 119.83 3587500 5927700 19495 6738000 5321200 6976200 4936100 4254300 3236800 3316200 4698400 3340500 5534200 339880 6820200 5093700 7031100 4974400 4434800 3419100 3277400 4487100 1 1 1 1 1 1 1 1 1 1 1 3587500 5927700 19495 6738000 5321200 6976200 4936100 4254300 3236800 3316200 4698400 3340500 5534200 339880 6820200 5093700 7031100 4974400 4434800 3419100 3277400 4487100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 484010000 484010000 0 9475 1486 8813 50571;50572;50573 61189;61190;61191 61189 3 IRPQLAK Unmodified 824.52322 0.52322184 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4;Q7Z4S6-6 KIF21A Kinesin-like protein KIF21A yes no 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 33.371 33.258 3 0.0023906 8834 20211116_3429_TMUAki_TMT10x_P_F2 113.1 84.995 1695400 3078100 24591 2651400 2315200 2366400 2054100 1399200 1545400 1433300 2100500 1578800 2870600 172160 2730800 2214900 2406600 2081500 1472400 1614100 1398400 2009100 2 2 2 2 2 2 2 2 2 2 2 839880 1507200 16581 1321700 1424700 1684400 1162100 736990 838070 734100 1049800 782130 1405700 93276 1366900 1360500 1672300 1182500 797050 874290 717080 1006200 1 1 1 1 1 1 1 1 1 1 1 855540 1570900 8010.5 1329800 890520 681930 891990 662220 707300 699200 1050700 796650 1464900 78886 1363900 854400 734220 898990 675400 739820 681350 1003000 1 1 1 1 1 1 1 1 1 1 1 115260000 71707000 43552000 9476 2082 8814 50574;50575;50576;50577 61192;61193 61192 2 IRQDDTSSSINFLTR Unmodified 1751.8802 0.8802258 523 P06746 POLB DNA polymerase beta yes yes 0 0 0 1 By MS/MS 6 0 1 1 48.61 48.706 3 0.0096221 12924 20211116_3434_TMUAki_TMT10x_P_F6 59.471 41.398 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9477 523 8815 50578 61194 61194 1 IRQEEIEIEVVQR Unmodified 1639.8893 0.88933392 1700 Q14254 FLOT2 Flotillin-2 yes yes 0 0 0 1 By MS/MS By MS/MS 2.4 1.02 1 2 1 1 3 2 47.017 46.845 3 1.2282E-22 15835 20211116_3441_TMUAki_TMT10x_S_F3 202.25 175.08 3760600 6373000 85191 6940800 5274400 5929200 4160000 5476000 5115800 4713400 5294800 3502100 5948800 412370 7025500 5034500 6092500 4307500 5567700 5169000 4634800 5102200 3 3 3 3 3 3 3 3 3 3 3 1376900 2363000 30001 2608100 2803900 3546200 1998400 2266100 1954200 1746800 2014800 1282300 2205800 162100 2657400 2670100 3526000 2067800 2353000 1992200 1727400 1941800 1 1 1 1 1 1 1 1 1 1 1 2383600 4010100 55190 4332600 2470500 2383000 2161600 3209900 3161600 2966600 3280000 2219800 3743000 250270 4368100 2364400 2566500 2239700 3214600 3176800 2907400 3160400 2 2 2 2 2 2 2 2 2 2 2 397540000 216770000 180770000 9478 1700 8816 50579;50580;50581;50582;50583 61195;61196;61197;61198 61197 4 IRTDAGFTLR Unmodified 1148.6302 0.63020611 717 P18206;P18206-2 VCL Vinculin yes no 0 0 0 1 By MS/MS 1 0 1 1 40.939 40.777 3 0.053469 12315 20211116_3439_TMUAki_TMT10x_S_F1 52.837 33.35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9479 717 8817 50584 61199 61199 1 IRTEDSEASTCVIIK Unmodified 1720.8665 0.86654957 1895 Q4J6C6;Q4J6C6-4;Q4J6C6-3;Q4J6C6-2 PREPL Prolyl endopeptidase-like yes no 0 0 0 1 By MS/MS 4 0 1 1 43.551 43.766 3 0.00010979 12224 20211116_3442_TMUAki_TMT10x_S_F4 84.195 64.147 874870 1438000 0 1699300 871700 743180 808150 1117000 1110600 889820 1301000 814580 1342800 71201 1700800 834150 824480 832430 1110100 1123400 878410 1249200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 874870 1438000 0 1699300 871700 743180 808150 1117000 1110600 889820 1301000 814580 1342800 71201 1700800 834150 824480 832430 1110100 1123400 878410 1249200 1 1 0 1 1 1 1 1 1 1 1 134760000 0 134760000 9480 1895 8818 50585 61200 61200 1 IRTPSGEFLER Unmodified 1303.6884 0.68844927 3196 Q9UNN5;Q9UNN5-2 FAF1 FAS-associated factor 1 yes no 0 0 0 1 By matching By MS/MS 5 0.816 1 1 1 1 2 38.548 38.66 3 0.046653 9017 20211116_3445_TMUAki_TMT10x_S_F6 46.964 24.918 170720 256620 0 317360 185050 131080 153260 212450 195890 187910 242800 158930 239680 11576 316680 176450 146850 158440 211170 199090 184540 232770 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 170720 256620 0 317360 185050 131080 153260 212450 195890 187910 242800 158930 239680 11576 316680 176450 146850 158440 211170 199090 184540 232770 1 1 0 1 1 1 1 1 1 1 1 80189000 63350000 16839000 9481 3196 8819 50586;50587;50588 61201 61201 1 IRTSPTFR Unmodified 976.54541 0.54541385 1364 P62750 RPL23A 60S ribosomal protein L23a yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 30.619 30.653 3 0.0066636 9308 20211116_3441_TMUAki_TMT10x_S_F3 74.267 49.423 748450 1514800 15084 1054000 1146000 2282100 823720 636620 661750 615620 808660 696990 1411700 81677 1126200 1091600 2212100 847370 729690 685510 602110 775540 1 1 1 1 1 1 1 1 1 1 1 748450 1514800 15084 1054000 1146000 2282100 823720 636620 661750 615620 808660 696990 1411700 81677 1126200 1091600 2212100 847370 729690 685510 602110 775540 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 41343000 41343000 0 9482 1364 8820 50589;50590;50591;50592 61202;61203;61204;61205 61204 4 IRVDFSITK Unmodified 1077.6182 0.61824444 1389 P62995;P62995-3 TRA2B Transformer-2 protein homolog beta yes no 0 0 0 1 By MS/MS 4 0 1 1 54.041 54.204 3 0.00095234 16118 20211116_3431_TMUAki_TMT10x_P_F4 93.477 45.624 2191100 3918700 0 3656300 4301700 7106100 3364500 4385600 4218700 3654700 3345300 2039900 3655600 189750 3800100 4099700 6965300 3488200 4574400 4223400 3599500 3254100 1 1 0 1 1 1 1 1 1 1 1 2191100 3918700 0 3656300 4301700 7106100 3364500 4385600 4218700 3654700 3345300 2039900 3655600 189750 3800100 4099700 6965300 3488200 4574400 4223400 3599500 3254100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 366810000 366810000 0 9483 1389 8821 50593 61206 61206 1 IRVDIIENQVMDFR Oxidation (M) 1762.9036 0.90360378 752 P21266 GSTM3 Glutathione S-transferase Mu 3 yes yes 0 0 1 1 By matching By MS/MS 5.25 0.433 3 1 1 3 65.381 65.424 3 0.018884 20162 20211116_3445_TMUAki_TMT10x_S_F6 53.351 45.046 3577500 6078100 23953 5694500 3972200 3595800 3571700 4241700 3617000 3511900 4700700 3331200 5670100 324450 5805000 3800200 3807100 3645200 4258300 3716200 3460000 4501000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3577500 6078100 23953 5694500 3972200 3595800 3571700 4241700 3617000 3511900 4700700 3331200 5670100 324450 5805000 3800200 3807100 3645200 4258300 3716200 3460000 4501000 1 1 1 1 1 1 1 1 1 1 1 1051500000 355380000 696160000 9484 752 8822 50594;50595;50596;50597 61207;61208 61208 869 2 IRVDVADQAQDK Unmodified 1356.6997 0.69974224 788 P23588;P23588-2 EIF4B Eukaryotic translation initiation factor 4B yes no 0 0 0 1 By MS/MS By MS/MS 4 0.707 1 2 1 1 3 34.005 33.987 3 5.6444E-15 9960 20211116_3431_TMUAki_TMT10x_P_F4 150.22 113.1 5227400 7645100 23285 10268000 3850000 3400800 4233700 4215000 5230900 4354000 5983800 4867300 7143500 414150 10187000 3701200 3906300 4305200 4248600 5304600 4246600 5749000 5 5 2 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5227400 7645100 23285 10268000 3850000 3400800 4233700 4215000 5230900 4354000 5983800 4867300 7143500 414150 10187000 3701200 3906300 4305200 4248600 5304600 4246600 5749000 5 5 2 5 5 5 5 5 5 5 5 270600000 0 270600000 9485 788 8823 50598;50599;50600;50601 61209;61210;61211;61212;61213;61214 61209 6 IRVDYSITKR Unmodified 1249.7143 0.71427009 1650 Q13595;Q13595-4;Q13595-3;Q13595-2 TRA2A Transformer-2 protein homolog alpha yes no 0 0 0 2 By matching By MS/MS 2.5 0.5 1 1 1 1 38.522 38.262 4 0.00022008 12329 20211116_3441_TMUAki_TMT10x_S_F3 115.33 88.54 430190 679090 19304 653000 564100 484330 493360 640650 614000 561880 612600 400690 633560 55532 665480 540280 507320 507870 641120 619310 552010 590990 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 430190 679090 19304 653000 564100 484330 493360 640650 614000 561880 612600 400690 633560 55532 665480 540280 507320 507870 641120 619310 552010 590990 1 1 1 1 1 1 1 1 1 1 1 56942000 27445000 29497000 9486 1650 8824 50602;50603 61215 61215 1 IRVESLLVTAISK Unmodified 1427.8712 0.87116466 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 0 1 By MS/MS 4 0.632 1 3 1 5 71.919 71.922 3 5.5456E-19 23364 20211116_3431_TMUAki_TMT10x_P_F4 161.49 132.69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9487 196 8825 50604;50605;50606;50607;50608 61216;61217;61218;61219;61220 61219 5 IRYESGDHVAVYPANDSALVNQLGK Unmodified 2715.3616 0.36164241 696 P16435 POR NADPH--cytochrome P450 reductase yes yes 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 54.761 55.382 4 0.0063133 17494 20211116_3435_TMUAki_TMT10x_P_F7 49.593 42.399 3867300 7016200 161140 6729000 5126600 6742900 4298500 4997800 4887800 5016200 5606000 3602100 6545700 488440 6885200 4904500 6829200 4421700 5170000 4972200 4898300 5385600 2 2 2 2 2 2 2 2 2 2 2 2097800 3392300 151010 3362800 2674500 4512500 2502500 2469200 2524300 2386400 2957100 1954400 3165200 322740 3449900 2569300 4480200 2548100 2611200 2582500 2334100 2839200 1 1 1 1 1 1 1 1 1 1 1 1769500 3623900 10132 3366200 2452000 2230500 1796000 2528600 2363500 2629800 2648800 1647600 3380500 165700 3435300 2335200 2349000 1873600 2558900 2389700 2564200 2546400 1 1 1 1 1 1 1 1 1 1 1 1139300000 906560000 232710000 9488 696 8826 50609;50610 61221 61221 1 IRYESLTDPSK Unmodified 1307.6721 0.67213051 553;544;1914 P07900;P07900-2;Q58FF6;P08238;Q58FF7;Q58FF8 HSP90AA1;HSP90AB4P;HSP90AB1;HSP90AB3P;HSP90AB2P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 2 no no 0 0 0 1 By MS/MS By MS/MS 5.29 1.03 2 2 2 1 3 4 41.523 41.712 3 1.7337E-08 10406 20211116_3445_TMUAki_TMT10x_S_F6 151.7 128.23 22635000 30951000 232560 58621000 46561000 26540000 23102000 17174000 22168000 15686000 30205000 21077000 28984000 2396900 57369000 44067000 28805000 24631000 17890000 22878000 15381000 28889000 9 9 7 9 9 9 9 9 9 9 9 12173000 15284000 32001 28990000 39274000 20723000 13247000 8870800 11579000 7892800 15618000 11335000 14313000 1406800 28483000 37005000 21354000 14746000 9588100 11996000 7748800 14941000 4 4 3 4 4 4 4 4 4 4 4 10462000 15667000 200560 29630000 7286500 5817100 9855500 8303500 10589000 7792700 14587000 9742300 14671000 990140 28886000 7062100 7450800 9885200 8301700 10882000 7631800 13948000 5 5 4 5 5 5 5 5 5 5 5 2048000000 1345300000 702730000 9489 544;553;1914 8827 50611;50612;50613;50614;50615;50616;50617 61222;61223;61224;61225;61226;61227;61228;61229;61230 61229 9 IRYESLTDPSKLDSGK Unmodified 1807.9316 0.93159267 553;544;1914 P07900;P07900-2;P08238;Q58FF7;Q58FF8 HSP90AA1;HSP90AB1;HSP90AB3P;HSP90AB2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 2 no no 0 0 0 2 By MS/MS By MS/MS 6.67 1.03 2 3 4 3 7 5 48.017 48.277 3;4 2.7344E-21 15134 20211116_3446_TMUAki_TMT10x_S_F7 173.37 157.43 176100000 260500000 3196400 484040000 179920000 174430000 106430000 175820000 230940000 165340000 241720000 163990000 243910000 17574000 473380000 170860000 196820000 115650000 178380000 229880000 161910000 232850000 14 14 11 14 14 14 14 14 14 14 14 45846000 65625000 1143100 135460000 120500000 119570000 51445000 45522000 61997000 41842000 61125000 42695000 61497000 5898900 133020000 113870000 121130000 56121000 49911000 62579000 41017000 58992000 6 6 5 6 6 6 6 6 6 6 6 130260000 194870000 2053200 348590000 59420000 54855000 54982000 130300000 168940000 123500000 180600000 121300000 182410000 11675000 340370000 56984000 75696000 59531000 128470000 167300000 120900000 173860000 8 8 6 8 8 8 8 8 8 8 8 50578000000 30212000000 20366000000 9490 544;553;1914 8828 50618;50619;50620;50621;50622;50623;50624;50625;50626;50627;50628;50629 61231;61232;61233;61234;61235;61236;61237;61238;61239;61240;61241;61242;61243;61244;61245 61241 15 ISAEDGLKHEYFR Unmodified 1563.7682 0.76815616 751 P21127;Q9UQ88;P21127-4;P21127-5;P21127-10;P21127-6;Q9UQ88-4;P21127-8;Q9UQ88-3;P21127-3;Q9UQ88-10;P21127-12;Q9UQ88-2;P21127-2;P21127-9;Q9UQ88-5 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A no no 0 0 0 1 By MS/MS 5.5 0.5 1 1 2 44.596 44.751 4 0.00015619 11659 20211116_3445_TMUAki_TMT10x_S_F6 91.969 71.588 1994700 3103700 17223 3851800 1564500 1507200 1742600 2342300 2660300 2249900 2709300 1857400 2898800 175400 3841600 1505600 1698800 1786700 2336600 2668000 2201200 2612000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1994700 3103700 17223 3851800 1564500 1507200 1742600 2342300 2660300 2249900 2709300 1857400 2898800 175400 3841600 1505600 1698800 1786700 2336600 2668000 2201200 2612000 1 1 1 1 1 1 1 1 1 1 1 267510000 0 267510000 9491 751 8829 50630;50631 61246 61246 1 ISAFGYLECSAK Unmodified 1344.6384 0.63838754 549 P08134 RHOC Rho-related GTP-binding protein RhoC yes yes 0 0 0 0 By MS/MS By MS/MS 7.4 0.49 3 2 1 4 66.333 66.566 2;3 9.464E-16 22642 20211116_3446_TMUAki_TMT10x_S_F7 176.95 134.95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9492 549 8830 50632;50633;50634;50635;50636 61247;61248;61249;61250;61251 61249 5 ISATEDTPEAEGEVPELYHQR Unmodified 2370.0975 0.097548378 2443 Q96EK5 KIAA1279 KIF1-binding protein yes yes 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 49.778 49.647 3 3.138E-35 13897 20211116_3428_TMUAki_TMT10x_P_F1 191.61 176.02 3283300 5525400 50996 7449400 6105600 6803900 3820600 6209900 6146200 4355100 5162900 3057300 5163000 346710 7454000 5799200 6957900 4066800 6288300 6116000 4329900 5010900 4 4 2 4 4 4 4 4 4 4 4 1764900 3072900 50996 4273200 4961300 5753600 3099000 3421400 3404200 2254900 2837800 1643700 2871800 238620 4296700 4713400 5717700 3250300 3561400 3429800 2250300 2755100 2 2 2 2 2 2 2 2 2 2 2 1518400 2452600 0 3176100 1144300 1050300 721560 2788600 2742000 2100200 2325000 1413600 2291200 108090 3157300 1085800 1240200 816560 2726900 2686300 2079500 2255800 2 2 0 2 2 2 2 2 2 2 2 479340000 340090000 139250000 9493 2443 8831 50637;50638;50639 61252;61253;61254;61255;61256 61252 5 ISATSIFFESMPYK Oxidation (M) 1635.7854 0.7854457 915;914 P34897;P34897-3;P34897-2;P34896;P34896-2;P34896-4;P34896-3 SHMT2;SHMT1 Serine hydroxymethyltransferase, mitochondrial;Serine hydroxymethyltransferase, cytosolic no no 0 0 1 0 By MS/MS By MS/MS 4.73 3.25 4 1 2 4 5 6 76.003 75.997 2;3 4.251E-19 24752 20211116_3436_TMUAki_TMT10x_P_F8 148.94 128.66 50120000 90173000 829900 68016000 65224000 113120000 68938000 86670000 80856000 78798000 77490000 46673000 84058000 5091800 71627000 62680000 111860000 70101000 89219000 81616000 77283000 74856000 15 15 12 15 15 15 15 15 15 15 15 31975000 56029000 516810 41893000 34071000 84004000 42528000 55824000 52453000 50674000 48339000 29776000 52228000 3125600 44366000 32911000 82347000 43003000 58026000 52782000 49703000 46758000 8 8 6 8 8 8 8 8 8 8 8 18145000 34144000 313090 26123000 31152000 29113000 26409000 30846000 28403000 28124000 29151000 16897000 31830000 1966200 27261000 29769000 29513000 27098000 31193000 28834000 27579000 28097000 7 7 6 7 7 7 7 7 7 7 7 10094000000 4782400000 5311500000 9494 915;914 8832 50640;50641;50642;50643;50644;50645;50646;50647;50648;50649;50650 61257;61258;61259;61260;61261;61262;61263;61264;61265;61266;61267;61268;61269;61270;61271;61272 61265 1143;1149 16 ISATSIFFESMPYK Unmodified 1619.7905 0.79053108 915;914 P34897;P34897-3;P34897-2;P34896;P34896-2;P34896-4;P34896-3 SHMT2;SHMT1 Serine hydroxymethyltransferase, mitochondrial;Serine hydroxymethyltransferase, cytosolic no no 0 0 0 0 By MS/MS 2 0 2 2 79.019 78.988 2;3 1.918E-13 27348 20211116_3429_TMUAki_TMT10x_P_F2 141.88 115.09 9682600 15103000 100040 14270000 9846700 15542000 12193000 7560600 5864700 7787400 10368000 9016200 14090000 898280 14635000 9506500 15575000 12049000 8096700 6403000 7596200 9861900 2 2 2 2 2 2 2 2 2 2 2 9682600 15103000 100040 14270000 9846700 15542000 12193000 7560600 5864700 7787400 10368000 9016200 14090000 898280 14635000 9506500 15575000 12049000 8096700 6403000 7596200 9861900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1294600000 1294600000 0 9495 915;914 8832 50651;50652 61273;61274 61273 2 ISAVSVAER Unmodified 930.51345 0.51344502 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 37.371 37.469 2 0.00034878 8385 20211116_3442_TMUAki_TMT10x_S_F4 91.867 58.604 2229900 3479800 9002.3 3741900 4069800 3807200 2644100 2681100 3290700 2398100 3257700 2076100 3248000 198940 3799800 3865700 3849200 2776600 2774300 3318300 2353800 3143600 2 2 1 2 2 2 2 2 2 2 2 1644600 2502500 0 2610000 3457700 3354100 2077400 1846000 2354200 1672900 2349700 1531200 2335500 141650 2666200 3279400 3337100 2188000 1947800 2382700 1641000 2266800 1 1 0 1 1 1 1 1 1 1 1 585230 977290 9002.3 1131800 612100 453090 566700 835050 936530 725220 908060 544970 912500 57286 1133600 586310 512030 588650 826460 935560 712810 876860 1 1 1 1 1 1 1 1 1 1 1 98542000 83571000 14971000 9496 1546 8833 50653;50654;50655 61275;61276 61276 2 ISAYSALSHPYFQDLER Unmodified 1995.969 0.96904081 1469 Q00534 CDK6 Cyclin-dependent kinase 6 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.816 2 2 2 4 2 63.58 63.842 3 1.2997E-21 21467 20211116_3446_TMUAki_TMT10x_S_F7 165.58 151.11 17874000 30405000 413420 30932000 21273000 33840000 21980000 22227000 21393000 23027000 22807000 16645000 28373000 1910100 31562000 20440000 34034000 22240000 23209000 21840000 22457000 21957000 6 6 5 6 6 6 6 6 6 6 6 12419000 20121000 228470 21033000 14159000 27231000 15561000 14965000 14655000 15663000 14921000 11565000 18779000 1262200 21485000 13625000 27083000 15683000 15855000 14958000 15269000 14386000 4 4 3 4 4 4 4 4 4 4 4 5455200 10284000 184950 9898800 7113400 6609100 6419200 7262400 6738000 7364100 7885400 5080800 9594500 647870 10076000 6814400 6950500 6557400 7354000 6881500 7188000 7571200 2 2 2 2 2 2 2 2 2 2 2 3709600000 2149800000 1559800000 9497 1469 8834 50656;50657;50658;50659;50660;50661 61277;61278;61279;61280;61281;61282;61283 61282 7 ISDEGIAYLVK Unmodified 1206.6496 0.64960415 928 P35249;P35249-2 RFC4 Replication factor C subunit 4 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.632 1 3 1 3 2 69.03 69.106 2 1.9585E-12 22493 20211116_3433_TMUAki_TMT10x_P_F5 144.65 95.854 6806600 11992000 62258 9542900 7916700 9666600 9781800 4269900 4205600 5401500 8062500 6338100 11180000 637880 9910100 7641600 9718800 9651900 4647600 4659300 5228800 7658200 1 1 1 1 1 1 1 1 1 1 1 6806600 11992000 62258 9542900 7916700 9666600 9781800 4269900 4205600 5401500 8062500 6338100 11180000 637880 9910100 7641600 9718800 9651900 4647600 4659300 5228800 7658200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 230240000 230240000 0 9498 928 8835 50662;50663;50664;50665;50666 61284;61285;61286;61287;61288 61285 5 ISDSEGFK Unmodified 881.41306 0.41306227 777 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 42.193 42.11 2 0.0074669 12626 20211116_3430_TMUAki_TMT10x_P_F3 89.355 22.323 3208900 5763600 0 5656900 3948100 3523500 3377800 3284400 3586100 3198400 4428400 2987700 5377600 259000 5746600 3770200 3715700 3462500 3348800 3669100 3127300 4245900 3 3 0 3 3 3 3 3 3 3 3 846690 1463100 0 1326700 1423700 1599200 946020 705810 786150 738540 1033700 788340 1364800 77885 1367100 1353100 1592200 979620 763690 815550 719950 989510 1 1 0 1 1 1 1 1 1 1 1 2362200 4300400 0 4330200 2524400 1924300 2431800 2578600 2800000 2459900 3394800 2199300 4012900 181120 4379500 2417100 2123400 2482900 2585100 2853500 2407300 3256400 2 2 0 2 2 2 2 2 2 2 2 219410000 80743000 138660000 9499 777 8836 50667;50668;50669;50670 61289;61290;61291 61289 3 ISDSVLVDIKDTEPLIQTAK Unmodified 2184.1889 0.18892957 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 1 By MS/MS By MS/MS 5.35 1.74 2 1 3 4 4 4 2 11 9 77.736 77.738 3;4 4.2098E-51 26150 20211116_3442_TMUAki_TMT10x_S_F4 223.54 205.94 339210000 563310000 2433900 540900000 397610000 469070000 409480000 281200000 295410000 332980000 403250000 315830000 525550000 28731000 552320000 381540000 478070000 411200000 296940000 309350000 323070000 385670000 25 25 14 25 25 25 25 25 25 25 25 147020000 248040000 1763300 225230000 146070000 267390000 166490000 126930000 133810000 143870000 174640000 136900000 231360000 12902000 232010000 140620000 266640000 166800000 136650000 139000000 139810000 167210000 11 11 8 11 11 11 11 11 11 11 11 192180000 315280000 670620 315670000 251540000 201680000 242990000 154280000 161610000 189110000 228610000 178930000 294190000 15829000 320300000 240910000 211420000 244410000 160290000 170340000 183260000 218460000 14 14 6 14 14 14 14 14 14 14 14 46290000000 22411000000 23879000000 9500 1079 8837 50671;50672;50673;50674;50675;50676;50677;50678;50679;50680;50681;50682;50683;50684;50685;50686;50687;50688;50689;50690 61292;61293;61294;61295;61296;61297;61298;61299;61300;61301;61302;61303;61304;61305;61306;61307;61308;61309;61310;61311;61312;61313;61314;61315;61316;61317 61309 26 ISDVIEDSVVEDYNSVDK Unmodified 2024.9426 0.94261087 2076 Q7Z3K3;Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-6;Q7Z3K3-3;Q7Z3K3-4 POGZ Pogo transposable element with ZNF domain yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 77.811 77.784 3 7.5206E-24 25385 20211116_3428_TMUAki_TMT10x_P_F1 171.26 149.73 6002800 10180000 51805 9431000 6856900 9911800 7168500 6470800 6150900 6342800 8723700 5589600 9496400 557920 9681300 6585700 9990500 7223500 6748900 6393300 6199900 8335800 2 2 2 2 2 2 2 2 2 2 2 3481000 5679100 24602 5105000 3502200 6807900 3994900 3507700 3549600 3560500 4964000 3241400 5297000 311830 5273900 3372000 6756200 4012700 3734500 3680800 3475200 4744800 1 1 1 1 1 1 1 1 1 1 1 2521800 4501200 27203 4326100 3354700 3103900 3173500 2963100 2601300 2782300 3759700 2348200 4199400 246090 4407400 3213700 3234200 3210800 3014300 2712500 2724700 3591000 1 1 1 1 1 1 1 1 1 1 1 955130000 577560000 377570000 9501 2076 8838 50691;50692 61318;61319 61318 2 ISEIEDAAFLAR Unmodified 1333.6878 0.68778057 337;394 O75477;O94905 ERLIN1;ERLIN2 Erlin-1;Erlin-2 no no 0 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 70.981 70.694 2 1.3762E-14 22401 20211116_3428_TMUAki_TMT10x_P_F1 148.56 99.139 10257000 18570000 141810 15739000 15273000 19951000 14549000 18198000 17954000 16782000 16494000 9551200 17318000 1041700 16320000 14634000 20025000 14901000 18549000 18065000 16448000 15956000 4 4 2 4 4 4 4 4 4 4 4 2374600 4242100 0 3622000 2646900 6369800 3218400 3897200 4127600 4167400 4046900 2210900 3956000 199460 3779900 2552300 6264100 3262800 4095300 4156500 4058900 3906400 1 1 0 1 1 1 1 1 1 1 1 7882400 14328000 141810 12117000 12626000 13581000 11331000 14301000 13827000 12614000 12447000 7340300 13362000 842260 12540000 12082000 13761000 11638000 14454000 13908000 12389000 12050000 3 3 2 3 3 3 3 3 3 3 3 1118800000 452390000 666440000 9502 337;394 8839 50693;50694;50695;50696 61320;61321;61322;61323;61324 61320 5 ISELGAGNGGVVFK Unmodified 1346.7194 0.71941505 1496 Q02750;Q02750-2 MAP2K1 Dual specificity mitogen-activated protein kinase kinase 1 yes no 0 0 0 0 By MS/MS 7 0 1 1 61.579 62.071 2 1.4474E-14 20738 20211116_3446_TMUAki_TMT10x_S_F7 144.1 115.38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9503 1496 8840 50697 61325 61325 1 ISEQFTAMFR Oxidation (M) 1244.586 0.58595803 1418;1668;2689;539;1640;488 Q13509;Q13509-2;P07437;P68371;Q13885;Q9BVA1;P04350 TUBB3;TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB4A Tubulin beta-3 chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain no no 0 0 1 0 By MS/MS By MS/MS 5.3 2.45 2 1 1 2 2 2 5 5 55.756 55.907 2 0.0026658 17626 20211116_3435_TMUAki_TMT10x_P_F7 83.623 63.837 48913000 85696000 594510 81337000 60611000 101200000 60023000 72535000 86972000 76191000 74527000 45546000 79947000 4581200 83582000 58125000 101230000 61749000 75305000 86858000 74262000 72279000 12 12 8 12 12 12 12 12 12 12 12 29641000 50520000 439020 48111000 46188000 75963000 38921000 42918000 50149000 45760000 43658000 27601000 47132000 2958400 49668000 44122000 74925000 40207000 45388000 50297000 44575000 42316000 7 7 5 7 7 7 7 7 7 7 7 19272000 35176000 155490 33225000 14423000 25241000 21103000 29618000 36823000 30431000 30869000 17945000 32816000 1622900 33914000 14003000 26305000 21543000 29917000 36562000 29687000 29963000 5 5 3 5 5 5 5 5 5 5 5 14662000000 7027800000 7633700000 9504 1640;539;1418;1668;2689;488 8841 50698;50699;50700;50701;50702;50703;50704;50705;50706;50707 61326;61327;61328;61329;61330;61331;61332;61333;61334;61335;61336 61330 381 11 ISEQFTAMFR Unmodified 1228.591 0.59104341 1418;1668;2689;539;1640;488 Q13509;Q13509-2;P07437;P68371;Q13885;Q9BVA1;P04350 TUBB3;TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB4A Tubulin beta-3 chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain no no 0 0 0 0 By MS/MS By MS/MS 4.5 3.2 2 1 1 2 3 3 68.978 68.989 2 1.6322E-09 21840 20211116_3436_TMUAki_TMT10x_P_F8 185.27 137.68 55124000 86549000 131810 94626000 52844000 66703000 63949000 30887000 28037000 34448000 57017000 51324000 80790000 4296100 95546000 50933000 68871000 63174000 33318000 31122000 33497000 54105000 6 6 3 6 6 6 6 6 6 6 6 32872000 48780000 44987 53569000 36472000 47206000 39774000 17336000 15313000 18978000 31739000 30605000 45535000 2517700 54215000 35038000 47812000 39415000 19183000 17232000 18467000 30109000 3 3 1 3 3 3 3 3 3 3 3 22252000 37769000 86819 41058000 16372000 19498000 24175000 13551000 12723000 15470000 25278000 20719000 35255000 1778400 41331000 15895000 21059000 23759000 14135000 13890000 15030000 23996000 3 3 2 3 3 3 3 3 3 3 3 5989200000 3294900000 2694300000 9505 1640;539;1418;1668;2689;488 8841 50708;50709;50710;50711;50712;50713 61337;61338;61339;61340;61341;61342 61339 6 ISFEEFER Unmodified 1055.4924 0.49237523 3326 Q9Y5Q9;Q9Y5Q9-2 GTF3C3 General transcription factor 3C polypeptide 3 yes no 0 0 0 0 By MS/MS 2 0 1 1 59.281 59.024 2 0.10886 19274 20211116_3429_TMUAki_TMT10x_P_F2 56.434 30.05 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9506 3326 8842 50714 61343 61343 1 ISFLENNLEQLTK Unmodified 1547.8195 0.81952302 906;262 O60282;Q12840;O60282-2;P33176 KIF5C;KIF5A;KIF5B Kinesin heavy chain isoform 5C;Kinesin heavy chain isoform 5A;Kinesin-1 heavy chain no no 0 0 0 0 By MS/MS By MS/MS 6.57 0.495 3 4 4 3 78.611 78.63 2;3 2.6553E-22 27288 20211116_3435_TMUAki_TMT10x_P_F7 199.82 172.71 57416000 95185000 244210 101890000 55958000 97980000 50066000 45977000 42679000 48254000 64686000 53460000 88843000 4769300 103410000 53509000 98888000 50863000 49439000 44523000 47033000 61719000 5 5 3 5 5 5 5 5 5 5 5 38125000 61469000 228550 70541000 31227000 78385000 25167000 28444000 27984000 31913000 41957000 35499000 57391000 3197500 71440000 29798000 78247000 25932000 31544000 28841000 31025000 40042000 3 3 2 3 3 3 3 3 3 3 3 19290000 33716000 15660 31350000 24731000 19595000 24899000 17533000 14695000 16341000 22729000 17960000 31451000 1571800 31974000 23711000 20641000 24931000 17895000 15681000 16008000 21677000 2 2 1 2 2 2 2 2 2 2 2 5591300000 2166000000 3425300000 9507 262;906 8843 50715;50716;50717;50718;50719;50720;50721 61344;61345;61346;61347;61348 61345 5 ISFPAIQAAPSFSNSFPQIFR Unmodified 2324.1954 0.19535235 782 P23381;P23381-2 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 2 4 3 3 80.579 80.595 2;3 8.5713E-69 28066 20211116_3435_TMUAki_TMT10x_P_F7 257.04 236.74 6559900 12201000 0 11131000 9764700 11625000 9723100 7549900 7584900 8336000 8999500 6106700 11380000 259540 11438000 9352500 11721000 9798500 7905400 7860100 8109000 8637700 7 7 0 7 7 7 7 7 7 7 7 3216100 6079800 0 5779200 4305600 8098700 4630700 3917900 3952400 4309900 4710400 2993900 5672000 118700 5951700 4131600 8013400 4659100 4206200 4077400 4193100 4520500 4 4 0 4 4 4 4 4 4 4 4 3343700 6120700 0 5351900 5459100 3526200 5092400 3632000 3632600 4026100 4289100 3112800 5708400 140850 5486800 5220800 3707200 5139400 3699200 3782700 3915900 4117200 3 3 0 3 3 3 3 3 3 3 3 8281200000 4123700000 4157500000 9508 782 8844 50722;50723;50724;50725;50726;50727 61349;61350;61351;61352;61353;61354;61355 61351 7 ISGADINSICQESGMLAVR Unmodified 2019.9718 0.9717597 1032 P43686;P43686-2 PSMC4 26S protease regulatory subunit 6B yes no 0 0 0 0 By MS/MS By MS/MS 6 0 3 2 1 69.277 69.219 3 2.9456E-05 21371 20211116_3434_TMUAki_TMT10x_P_F6 81.639 70.199 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9509 1032 8845 50728;50729;50730 61356;61357;61358 61357 3 ISGAIGPCVSLNSK Unmodified 1401.7286 0.72859953 1808 Q15436;Q15436-2 SEC23A Protein transport protein Sec23A yes no 0 0 0 0 By MS/MS 1 0 1 1 56.683 56.382 3 0.075164 18695 20211116_3439_TMUAki_TMT10x_S_F1 37.366 21.476 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9510 1808 8846 50731 61359 61359 1 ISGETIFVTAPHEATAGIIGVNR Unmodified 2352.2438 0.24375911 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS By MS/MS 7 0.707 2 4 2 5 3 65.783 66.066 2;3;4 1.0877E-92 21935 20211116_3435_TMUAki_TMT10x_P_F7 300.51 274.39 27456000 46736000 233770 45411000 31794000 43876000 33172000 29296000 27330000 30040000 34769000 25565000 43604000 2069600 46397000 30528000 44465000 33395000 30544000 28323000 29308000 33310000 14 14 6 14 14 14 14 14 14 14 14 15451000 25143000 138560 25359000 17366000 31218000 19333000 16360000 15811000 16854000 19154000 14387000 23461000 1191700 25943000 16706000 31108000 19398000 17399000 16357000 16440000 18374000 8 8 3 8 8 8 8 8 8 8 8 12004000 21593000 95214 20051000 14427000 12658000 13839000 12936000 11520000 13186000 15614000 11178000 20143000 877920 20454000 13823000 13357000 13996000 13146000 11966000 12868000 14936000 6 6 3 6 6 6 6 6 6 6 6 22839000000 13643000000 9196700000 9511 1471 8847 50732;50733;50734;50735;50736;50737;50738;50739 61360;61361;61362;61363;61364;61365;61366;61367;61368;61369;61370;61371;61372;61373 61365 14 ISGETIFVTAPHEATAGIIGVNRK Unmodified 2480.3387 0.33872212 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 1 By MS/MS By MS/MS 4 3.29 2 1 2 2 3 60.138 60.07 4 4.7153E-48 20196 20211116_3439_TMUAki_TMT10x_S_F1 201.27 181.98 42302000 72687000 1417700 74776000 48796000 57226000 48235000 43591000 37576000 43224000 54815000 39397000 67832000 4790400 75874000 46852000 59074000 48626000 44997000 39305000 42230000 52345000 8 8 7 8 8 8 8 8 8 8 8 18646000 29700000 550410 31931000 22193000 35138000 22609000 18185000 16436000 17945000 23865000 17364000 27721000 1979600 32465000 21315000 35218000 22721000 19338000 17254000 17536000 22791000 3 3 2 3 3 3 3 3 3 3 3 23657000 42987000 867260 42846000 26603000 22088000 25626000 25406000 21140000 25279000 30951000 22033000 40111000 2810800 43409000 25537000 23857000 25906000 25660000 22051000 24694000 29553000 5 5 5 5 5 5 5 5 5 5 5 11229000000 6191000000 5037600000 9512 1471 8848 50740;50741;50742;50743;50744 61374;61375;61376;61377;61378;61379;61380;61381 61377 8 ISGLIYEETR Unmodified 1179.6136 0.61355299 1366 P62805 HIST1H4A Histone H4 yes yes 0 0 0 0 By MS/MS By MS/MS 3.78 1.51 4 5 31 21 6 5 4 2 24 54 60.478 60.457 2;3 4.1635E-19 18509 20211116_3430_TMUAki_TMT10x_P_F3 251.75 204.55 1051700000 1893100000 4346200 1659600000 1408800000 2167400000 1175700000 2865100000 2010500000 2223100000 1851700000 979160000 1765600000 71133000 1717200000 1344300000 2192300000 1230600000 2858600000 2003200000 2197700000 1791200000 92 92 43 92 92 92 92 92 92 92 92 316190000 517180000 3690000 477290000 669760000 1187900000 345890000 960840000 396780000 669840000 468080000 294420000 482430000 33159000 500360000 634180000 1161200000 369360000 979660000 403960000 666190000 449330000 33 33 22 33 33 33 33 33 33 33 33 735520000 1376000000 656260 1182300000 739040000 979510000 829830000 1904300000 1613700000 1553300000 1383600000 684740000 1283200000 37974000 1216800000 710070000 1031200000 861260000 1879000000 1599200000 1531500000 1341800000 59 59 21 59 59 59 59 59 59 59 59 570300000000 286570000000 283730000000 9513 1366 8849 50745;50746;50747;50748;50749;50750;50751;50752;50753;50754;50755;50756;50757;50758;50759;50760;50761;50762;50763;50764;50765;50766;50767;50768;50769;50770;50771;50772;50773;50774;50775;50776;50777;50778;50779;50780;50781;50782;50783;50784;50785;50786;50787;50788;50789;50790;50791;50792;50793;50794;50795;50796;50797;50798;50799;50800;50801;50802;50803;50804;50805;50806;50807;50808;50809;50810;50811;50812;50813;50814;50815;50816;50817;50818;50819;50820;50821;50822 61382;61383;61384;61385;61386;61387;61388;61389;61390;61391;61392;61393;61394;61395;61396;61397;61398;61399;61400;61401;61402;61403;61404;61405;61406;61407;61408;61409;61410;61411;61412;61413;61414;61415;61416;61417;61418;61419;61420;61421;61422;61423;61424;61425;61426;61427;61428;61429;61430;61431;61432;61433;61434;61435;61436;61437;61438;61439;61440;61441;61442;61443;61444;61445;61446;61447;61448;61449;61450;61451;61452;61453;61454;61455;61456;61457;61458;61459;61460;61461;61462;61463;61464;61465;61466;61467;61468;61469;61470;61471;61472;61473;61474;61475;61476;61477;61478;61479;61480;61481;61482;61483;61484;61485 61388 104 ISGLIYEETRGVLK Unmodified 1576.8825 0.88245763 1366 P62805 HIST1H4A Histone H4 yes yes 0 0 0 1 By MS/MS By MS/MS 6.18 2.12 2 2 2 2 4 5 11 12 16 70.171 70.217 2;3;4 2.2034E-50 23518 20211116_3446_TMUAki_TMT10x_S_F7 295.83 212.2 255300000 433490000 4747700 372380000 649110000 562260000 324530000 709720000 327500000 341860000 460180000 237730000 404270000 29814000 387040000 614440000 564390000 346250000 703140000 337750000 349040000 439810000 30 30 25 30 30 30 30 30 30 30 30 136200000 232680000 1878000 196890000 225020000 451570000 209460000 369790000 173010000 185410000 238970000 126820000 216980000 13884000 207200000 215460000 442490000 212150000 374590000 179950000 188680000 228480000 17 17 14 17 17 17 17 17 17 17 17 119100000 200810000 2869600 175490000 424090000 110690000 115080000 339930000 154480000 156450000 221210000 110910000 187290000 15929000 179850000 398980000 121910000 134110000 328550000 157800000 160360000 211330000 13 13 11 13 13 13 13 13 13 13 13 144920000000 75087000000 69833000000 9514 1366 8850 50823;50824;50825;50826;50827;50828;50829;50830;50831;50832;50833;50834;50835;50836;50837;50838;50839;50840;50841;50842;50843;50844;50845;50846;50847;50848;50849;50850 61486;61487;61488;61489;61490;61491;61492;61493;61494;61495;61496;61497;61498;61499;61500;61501;61502;61503;61504;61505;61506;61507;61508;61509;61510;61511;61512;61513;61514;61515;61516;61517;61518;61519;61520 61511 35 ISGSILNELIGLVR Unmodified 1482.877 0.87697832 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 By MS/MS 4 0 1 1 82.236 82.244 2 0.00054838 27600 20211116_3431_TMUAki_TMT10x_P_F4 77.644 46.272 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9515 2116 8851 50851 61521 61521 1 ISGTVNIR Unmodified 858.49232 0.49231565 819 P26639;P26639-2 TARS Threonine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 4.22 2.82 2 2 1 1 1 2 5 4 35.89 35.999 2 0.0090462 10644 20211116_3439_TMUAki_TMT10x_S_F1 82.426 41.544 3769400 5928100 25907 6223800 5401800 5680000 4194900 4315900 4207000 4035700 5102700 3509800 5532700 348400 6320300 5150000 5789300 4318500 4448600 4311100 3953000 4894700 7 7 4 7 7 7 7 7 7 7 7 2299100 3476900 15305 3711200 3870800 4350300 2599200 2709100 2615900 2525200 3017700 2140800 3245200 224550 3779100 3680400 4355500 2703500 2831800 2674800 2473800 2898600 4 4 2 4 4 4 4 4 4 4 4 1470300 2451200 10602 2512600 1531000 1329800 1595700 1606700 1591100 1510500 2085000 1369000 2287500 123860 2541300 1469700 1433900 1615100 1616800 1636400 1479200 1996000 3 3 2 3 3 3 3 3 3 3 3 278920000 200930000 77992000 9516 819 8852 50852;50853;50854;50855;50856;50857;50858;50859;50860 61522;61523;61524;61525;61526;61527 61524 6 ISGVQVNVK Unmodified 942.54983 0.54983053 122 O14647;O14647-2 CHD2 Chromodomain-helicase-DNA-binding protein 2 yes no 0 0 0 0 By MS/MS 7 0 1 1 23.6 23.729 3 0.056263 5111 20211116_3435_TMUAki_TMT10x_P_F7 39.848 16.42 2167200 3693900 4450.8 3453800 1509200 6200600 313410 2717700 806990 1920900 2635300 2018000 3445900 174610 3581500 1417300 6069000 395710 2915100 864240 1908900 2485600 1 1 1 1 1 1 1 1 1 1 1 2167200 3693900 4450.8 3453800 1509200 6200600 313410 2717700 806990 1920900 2635300 2018000 3445900 174610 3581500 1417300 6069000 395710 2915100 864240 1908900 2485600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 221710000 221710000 0 9517 122 8853 50861 61528 61528 1 ISHLPLVEELR Unmodified 1304.7452 0.74523587 1114 P49736 MCM2 DNA replication licensing factor MCM2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.86 0.833 3 2 2 3 4 55.749 55.879 3 1.4586E-08 15820 20211116_3444_TMUAki_TMT10x_S_F5 149.96 125.97 9239100 14436000 185250 17582000 12188000 13131000 9760000 10690000 10946000 10291000 12337000 8603600 13482000 947170 17648000 11634000 13597000 10064000 10981000 11133000 10067000 11858000 8 8 6 8 8 8 8 8 8 8 8 3817600 5708400 140370 7110700 7305800 8514000 5261600 4170100 4140100 4041000 4828500 3555600 5331800 496180 7176100 6962200 8489300 5409200 4455200 4285400 3952000 4636600 4 4 4 4 4 4 4 4 4 4 4 5421500 8727600 44877 10471000 4881800 4617500 4498400 6520300 6805700 6249800 7508400 5048000 8150300 450990 10471000 4671800 5107800 4654400 6525300 6847600 6115100 7221300 4 4 2 4 4 4 4 4 4 4 4 3281300000 1780100000 1501200000 9518 1114 8854 50862;50863;50864;50865;50866;50867;50868 61529;61530;61531;61532;61533;61534;61535;61536;61537;61538;61539 61536 11 ISHLVLPVQPENALK Unmodified 1656.9563 0.95629128 1921 Q5JTV8-3;Q5JTV8;Q5JTV8-2 TOR1AIP1 Torsin-1A-interacting protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 2 1 60.938 61.002 3 4.8224E-10 18563 20211116_3436_TMUAki_TMT10x_P_F8 134.88 107.26 21855000 34973000 49686 34241000 31003000 39200000 26091000 26832000 27562000 27572000 28834000 20348000 32631000 1731300 35058000 29590000 39350000 26768000 27927000 28021000 26898000 27776000 6 6 2 6 6 6 6 6 6 6 6 15219000 24204000 0 23801000 23327000 32896000 19519000 18816000 19493000 18922000 20265000 14168000 22584000 1120300 24446000 22254000 32635000 19997000 19844000 19859000 18476000 19525000 4 4 0 4 4 4 4 4 4 4 4 6636100 10769000 49686 10440000 7676800 6303500 6571800 8015800 8069300 8649800 8568300 6179200 10047000 611060 10612000 7336100 6715200 6770200 8082500 8161300 8421700 8250100 2 2 2 2 2 2 2 2 2 2 2 1653900000 1133200000 520600000 9519 1921 8855 50869;50870;50871 61540;61541;61542;61543;61544;61545 61542 6 ISIEMNGTLEDQLSHLK Unmodified 1926.9721 0.97207728 235 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 74.329 74.34 3 6.9304E-07 24392 20211116_3431_TMUAki_TMT10x_P_F4 99.044 79.466 2581400 4282400 7030.9 4228900 3339400 2699500 3241200 2377400 2014600 2368600 3240200 2403600 3995700 231180 4295100 3199900 2837200 3254900 2433200 2146700 2313700 3087700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2581400 4282400 7030.9 4228900 3339400 2699500 3241200 2377400 2014600 2368600 3240200 2403600 3995700 231180 4295100 3199900 2837200 3254900 2433200 2146700 2313700 3087700 1 1 1 1 1 1 1 1 1 1 1 482070000 0 482070000 9520 235 8856 50872;50873 61546;61547 61546 2 ISINQALQHAFIQEK Unmodified 1738.9366 0.93661847 1641 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog yes yes 0 0 0 0 By MS/MS 8 0 2 2 65.642 65.588 3 0.0026105 19915 20211116_3447_TMUAki_TMT10x_S_F8 65.105 49.349 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9521 1641 8857 50874;50875 61548;61549 61548 2 ISINQALQHAFIQEKI Unmodified 1852.0207 0.020682448 1641 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog yes yes 0 0 0 1 By MS/MS 1 0 1 1 73.38 73.38 3 0.0047755 23564 20211116_3428_TMUAki_TMT10x_P_F1 61.477 42.234 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9522 1641 8858 50876 61550 61550 1 ISIPVDISDSDMMLNIINSSITTK Unmodified 2606.3183 0.31830554 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 By MS/MS 5 2.94 1 1 1 3 82.623 82.625 3 1.6511E-22 27430 20211116_3436_TMUAki_TMT10x_P_F8 148.04 144.88 3138000 4463400 3637.1 4731600 3012700 3645700 3708500 1384700 1087800 1824200 3126000 2921700 4165800 248380 4791800 2905500 3730100 3644200 1535200 1293600 1763500 2952500 2 2 1 2 2 2 2 2 2 2 2 3138000 4463400 3637.1 4731600 3012700 3645700 3708500 1384700 1087800 1824200 3126000 2921700 4165800 248380 4791800 2905500 3730100 3644200 1535200 1293600 1763500 2952500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 408410000 408410000 0 9523 1094 8859 50877;50878;50879 61551;61552;61553 61553 3 ISIPVDISDSDMMLNIINSSITTK Oxidation (M) 2622.3132 0.31322016 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 1 0 By MS/MS 6 2.92 1 1 2 4 81.318 81.328 3;4 1.9389E-29 28442 20211116_3435_TMUAki_TMT10x_P_F7 169.7 156.08 3089900 5114400 86515 4501200 2771100 4875000 3615800 1922400 1622700 2499600 3683100 2877600 4770000 332340 4640800 2683500 4876900 3561800 2120900 1811100 2417400 3489100 3 3 3 3 3 3 3 3 3 3 3 3089900 5114400 86515 4501200 2771100 4875000 3615800 1922400 1622700 2499600 3683100 2877600 4770000 332340 4640800 2683500 4876900 3561800 2120900 1811100 2417400 3489100 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1437000000 1437000000 0 9524 1094 8859 50880;50881;50882;50883 61554;61555;61556;61557 61555 1444;1445 4 ISIPVDISDSDMMLNIINSSITTK 2 Oxidation (M) 2638.3081 0.30813478 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 2 0 By MS/MS By MS/MS 6.71 1.03 1 2 2 2 3 4 79.1 79.109 3 3.8837E-29 25727 20211116_3445_TMUAki_TMT10x_S_F6 162.39 149.72 13657000 23615000 98005 20063000 17836000 25269000 19318000 18826000 19291000 19153000 20095000 12716000 22022000 1187900 20796000 17139000 25277000 19517000 19476000 19655000 18692000 19360000 6 6 2 6 6 6 6 6 6 6 6 6024700 9698800 84745 8747500 6338700 12821000 7355400 6681700 6886100 6937800 8251000 5609800 9046500 529630 9052000 6105000 12672000 7393200 7111000 7074400 6765300 7917200 3 3 1 3 3 3 3 3 3 3 3 7632300 13916000 13260 11315000 11497000 12449000 11963000 12144000 12405000 12215000 11844000 7106200 12976000 658300 11744000 11034000 12605000 12124000 12365000 12581000 11927000 11443000 3 3 1 3 3 3 3 3 3 3 3 7457900000 2828800000 4629100000 9525 1094 8859 50884;50885;50886;50887;50888;50889;50890 61558;61559;61560;61561;61562;61563 61562 1444;1445 6 ISKESEDFIVEQYK Unmodified 1713.8461 0.8461317 1716 Q14566 MCM6 DNA replication licensing factor MCM6 yes yes 0 0 0 1 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 58.385 58.411 3 8.4696E-10 17824 20211116_3431_TMUAki_TMT10x_P_F4 116.43 87.798 7067000 12131000 38854 10112000 12355000 18889000 11018000 11254000 11033000 9794300 10100000 6580100 11312000 662780 10590000 11813000 18530000 11246000 11784000 11190000 9625800 9772400 2 2 1 2 2 2 2 2 2 2 2 7067000 12131000 38854 10112000 12355000 18889000 11018000 11254000 11033000 9794300 10100000 6580100 11312000 662780 10590000 11813000 18530000 11246000 11784000 11190000 9625800 9772400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1521600000 933550000 588050000 9526 1716 8860 50891;50892;50893;50894;50895 61564;61565;61566;61567 61565 4 ISKPAPYWEGTAVIDGEFK Unmodified 2107.0626 0.062606842 1605 Q13162 PRDX4 Peroxiredoxin-4 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 69.452 69.729 3 3.0396E-08 23953 20211116_3446_TMUAki_TMT10x_S_F7 105.32 88.445 6243200 11694000 0 8908000 6551800 5065300 7907500 3531800 3222100 3891500 6868000 5812800 10902000 492850 9227000 6314400 5362800 7805000 3679000 3612300 3785900 6512500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6243200 11694000 0 8908000 6551800 5065300 7907500 3531800 3222100 3891500 6868000 5812800 10902000 492850 9227000 6314400 5362800 7805000 3679000 3612300 3785900 6512500 1 1 0 1 1 1 1 1 1 1 1 666050000 0 666050000 9527 1605 8861 50896;50897 61568;61569 61569 2 ISKPDLKPFTPEVR Unmodified 1625.9141 0.91409211 1435 P78559;P78559-2 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 yes no 0 0 0 2 By matching By MS/MS 2 0 2 1 1 51.577 51.364 4 0.0030959 14853 20211116_3440_TMUAki_TMT10x_S_F2 65.105 46.74 2560300 4274300 0 4870800 2061400 2251000 1833800 3615300 3532400 2810900 3429200 2383900 3990600 203340 4887700 1970700 2485400 1924600 3582800 3515600 2778400 3311200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2560300 4274300 0 4870800 2061400 2251000 1833800 3615300 3532400 2810900 3429200 2383900 3990600 203340 4887700 1970700 2485400 1924600 3582800 3515600 2778400 3311200 1 1 0 1 1 1 1 1 1 1 1 1277900000 1064100000 213780000 9528 1435 8862 50898;50899 61570 61570 1 ISLEDIQAFEK Unmodified 1291.666 0.66598249 2326 Q8WXX5 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 0 0 0 0 By MS/MS By MS/MS 4.91 0.793 4 4 3 6 5 76.105 76.094 2;3 1.8697E-14 25506 20211116_3442_TMUAki_TMT10x_S_F4 189.66 126.24 41491000 69385000 410410 65357000 50152000 67517000 50265000 47289000 45473000 48176000 55159000 38635000 64729000 3841600 66992000 48109000 68194000 50832000 49127000 46814000 47014000 52910000 12 12 8 12 12 12 12 12 12 12 12 22539000 37076000 186720 35605000 26403000 46117000 28393000 24857000 24757000 25792000 29323000 20987000 34590000 2007100 36584000 25372000 45855000 28584000 26374000 25507000 25151000 28145000 6 6 3 6 6 6 6 6 6 6 6 18952000 32310000 223690 29752000 23749000 21399000 21872000 22431000 20716000 22384000 25836000 17648000 30139000 1834500 30408000 22737000 22339000 22248000 22753000 21307000 21863000 24765000 6 6 5 6 6 6 6 6 6 6 6 4293300000 2256000000 2037300000 9529 2326 8863 50900;50901;50902;50903;50904;50905;50906;50907;50908;50909;50910 61571;61572;61573;61574;61575;61576;61577;61578;61579;61580;61581;61582 61577 12 ISLEEQLK Unmodified 958.53351 0.53351176 1783 Q15276 RABEP1 Rab GTPase-binding effector protein 1 yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 55.386 55.368 2 0.0023174 17081 20211116_3442_TMUAki_TMT10x_S_F4 111.04 18.113 3936100 5466600 7204.9 7248800 3801900 2921700 3790800 4029900 4058800 3294700 4974300 3665000 5107600 331170 7204400 3645600 3268300 3854000 4019400 4149900 3248100 4770200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3936100 5466600 7204.9 7248800 3801900 2921700 3790800 4029900 4058800 3294700 4974300 3665000 5107600 331170 7204400 3645600 3268300 3854000 4019400 4149900 3248100 4770200 1 1 1 1 1 1 1 1 1 1 1 365570000 0 365570000 9530 1783 8864 50911;50912 61583;61584 61583 2 ISLGLPVGAVINCADNTGAK Unmodified 1969.0303 0.030260856 1369 P62829 RPL23 60S ribosomal protein L23 yes yes 0 0 0 0 By MS/MS By MS/MS 5.3 2.97 5 7 1 1 5 14 17 16 68.149 68.127 2;3;4 8.395E-134 24644 20211116_3447_TMUAki_TMT10x_S_F8 376.01 351.92 311290000 487120000 895740 440920000 284760000 437100000 326760000 276050000 279200000 320100000 344620000 289820000 454360000 16617000 453020000 273940000 441900000 327780000 290110000 288440000 310810000 330410000 42 42 15 42 42 42 42 42 42 42 42 159910000 229360000 491670 212830000 128170000 276650000 164110000 136430000 136170000 158650000 173470000 148880000 213960000 10762000 219240000 123660000 274740000 163720000 146460000 141080000 154030000 166190000 18 18 7 18 18 18 18 18 18 18 18 151370000 257760000 404070 228090000 156590000 160450000 162650000 139610000 143030000 161450000 171140000 140940000 240410000 5854900 233780000 150280000 167160000 164060000 143650000 147370000 156790000 164220000 24 24 8 24 24 24 24 24 24 24 24 98346000000 54182000000 44164000000 9531 1369 8865 50913;50914;50915;50916;50917;50918;50919;50920;50921;50922;50923;50924;50925;50926;50927;50928;50929;50930;50931;50932;50933;50934;50935;50936;50937;50938;50939;50940;50941;50942;50943;50944;50945 61585;61586;61587;61588;61589;61590;61591;61592;61593;61594;61595;61596;61597;61598;61599;61600;61601;61602;61603;61604;61605;61606;61607;61608;61609;61610;61611;61612;61613;61614;61615;61616;61617;61618;61619;61620;61621;61622;61623;61624;61625;61626;61627;61628;61629 61613 45 ISLGMPVGPNAHK Unmodified 1319.702 0.70199085 1633 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 49.2 49.2 3 7.5142E-06 14030 20211116_3440_TMUAki_TMT10x_S_F2 94.122 71.924 1216500 2137100 47721 2487100 3231600 3293500 1847900 1870900 2040200 1621200 1948400 1133000 1995500 173550 2524600 3066700 3273500 1952700 1966500 2063900 1593700 1882400 1 1 1 1 1 1 1 1 1 1 1 1216500 2137100 47721 2487100 3231600 3293500 1847900 1870900 2040200 1621200 1948400 1133000 1995500 173550 2524600 3066700 3273500 1952700 1966500 2063900 1593700 1882400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 146050000 146050000 0 9532 1633 8866 50946;50947 61630;61631 61631 2 ISLGMPVGPNAHK Oxidation (M) 1335.6969 0.69690547 1633 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 1 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 40.399 40.634 3 1.1165E-05 11650 20211116_3435_TMUAki_TMT10x_P_F7 88.021 70.289 2117900 3627100 33251 3670200 4547100 4396300 2569200 3110200 3642300 2824300 3215400 1972200 3384700 234550 3752000 4311900 4405000 2742700 3218500 3643300 2770200 3115000 3 3 2 3 3 3 3 3 3 3 3 1581300 2657000 33251 2648100 4076300 3837000 2048700 2268300 2659300 1992500 2274500 1472600 2479300 197030 2719900 3859600 3800300 2203000 2377200 2665000 1957400 2206100 2 2 2 2 2 2 2 2 2 2 2 536640 970110 0 1022100 470860 559300 520500 841850 983040 831790 940830 499620 905410 37512 1032100 452330 604680 539690 841380 978330 812790 908890 1 1 0 1 1 1 1 1 1 1 1 432830000 322350000 110480000 9533 1633 8866 50948;50949;50950 61632;61633;61634;61635 61632 2186 4 ISLNTLTLNVK Unmodified 1214.7234 0.72343779 373 O75955;O75955-2 FLOT1 Flotillin-1 yes no 0 0 0 0 By MS/MS 3 0 1 1 71.568 71.197 2 1.537E-07 25763 20211116_3441_TMUAki_TMT10x_S_F3 120.77 90.786 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9534 373 8867 50951 61636 61636 1 ISLPGQMAGTPITPLK Oxidation (M) 1638.9015 0.90147851 2833 Q9H8Y8;Q9H8Y8-2;Q9H8Y8-3 GORASP2 Golgi reassembly-stacking protein 2 yes no 0 0 1 0 By MS/MS By MS/MS 2 0 2 1 1 65.68 65.412 3 3.8761E-05 20658 20211116_3440_TMUAki_TMT10x_S_F2 82.707 68.549 6324200 10368000 89052 9904000 7471600 11418000 7716200 8315000 7594300 8120800 8022700 5889100 9672800 623380 10159000 7175600 11469000 7810300 8604900 7746500 7939200 7726000 2 2 2 2 2 2 2 2 2 2 2 3673000 5997400 57560 5587200 4164700 8540300 5079600 4801000 4294700 5015600 4583200 3420400 5594700 365050 5773000 4019800 8434100 5080300 5076400 4413700 4889700 4412300 1 1 1 1 1 1 1 1 1 1 1 2651200 4370700 31492 4316900 3306900 2878000 2636600 3514000 3299600 3105200 3439500 2468700 4078100 258330 4386200 3155900 3035000 2730000 3528400 3332700 3049500 3313600 1 1 1 1 1 1 1 1 1 1 1 515530000 275340000 240180000 9535 2833 8868 50952;50953 61637;61638 61638 2967 2 ISLPGQMAGTPITPLK Unmodified 1622.9066 0.90656389 2833 Q9H8Y8;Q9H8Y8-2;Q9H8Y8-3 GORASP2 Golgi reassembly-stacking protein 2 yes no 0 0 0 0 By MS/MS 3 0 1 1 72.822 72.508 3 0.001638 26274 20211116_3441_TMUAki_TMT10x_S_F3 65.716 40.397 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9536 2833 8868 50954 61639 61639 1 ISLPLPNFSSLNLR Unmodified 1569.8879 0.88787736 561 P08670 VIM Vimentin yes yes 0 0 0 0 By MS/MS By MS/MS 5.09 0.793 3 4 4 6 5 79.35 79.352 2;3 4.8147E-43 25832 20211116_3445_TMUAki_TMT10x_S_F6 263.29 211.5 29856000 52016000 41379 45885000 38266000 45272000 35096000 27933000 28550000 28888000 36096000 27797000 48514000 2299700 47234000 36592000 45768000 35562000 29304000 29599000 28174000 34587000 10 10 1 10 10 10 10 10 10 10 10 15658000 26323000 0 23672000 16299000 29707000 17571000 14163000 14905000 14644000 18221000 14578000 24552000 1113500 24427000 15647000 29542000 17674000 15199000 15398000 14282000 17475000 4 4 0 4 4 4 4 4 4 4 4 14198000 25693000 41379 22213000 21967000 15566000 17525000 13770000 13645000 14245000 17875000 13219000 23962000 1186300 22807000 20945000 16227000 17888000 14105000 14201000 13893000 17112000 6 6 1 6 6 6 6 6 6 6 6 10714000000 4363300000 6350800000 9537 561 8869 50955;50956;50957;50958;50959;50960;50961;50962;50963;50964;50965 61640;61641;61642;61643;61644;61645;61646;61647;61648;61649;61650 61649 11 ISLSTLQQQLGQPEK Unmodified 1668.9046 0.90464964 3326 Q9Y5Q9 GTF3C3 General transcription factor 3C polypeptide 3 yes yes 0 0 0 0 By MS/MS 8 0 1 1 69.239 69.34 3 2.1808E-06 22007 20211116_3436_TMUAki_TMT10x_P_F8 88.507 72.283 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9538 3326 8870 50966 61651 61651 1 ISMFCHVEPEQVICVHDVSSIYR Oxidation (M) 2820.3033 0.30334095 709 P17812 CTPS1 CTP synthase 1 yes yes 0 0 1 0 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 60.764 61.05 4 1.7684E-07 20378 20211116_3446_TMUAki_TMT10x_S_F7 89.946 83.583 8824300 14845000 58621 14001000 11606000 18404000 10780000 12527000 13121000 12601000 12863000 8216800 13849000 825190 14409000 11111000 18345000 11051000 13036000 13237000 12304000 12417000 3 3 3 3 3 3 3 3 3 3 3 6776800 10998000 24039 10445000 8699100 15992000 8293600 9038100 9459700 9719800 9537700 6310100 10260000 611170 10778000 8332300 15793000 8469900 9560700 9575400 9464800 9198200 2 2 2 2 2 2 2 2 2 2 2 2047500 3846900 34582 3556100 2907200 2411900 2486700 3489100 3661700 2881500 3325400 1906700 3588500 214020 3631200 2779100 2551900 2580800 3475000 3661800 2839200 3218300 1 1 1 1 1 1 1 1 1 1 1 3615100000 2084100000 1531000000 9539 709 8871 50967;50968;50969;50970;50971 61652;61653;61654 61654 790 3 ISMPDFDLHLK Oxidation (M) 1330.6591 0.65912298 1555 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 1 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 58.703 58.741 3 0.0014194 17431 20211116_3445_TMUAki_TMT10x_S_F6 75.819 60.447 2673000 4768500 0 4698800 2996700 2712100 2639900 4300600 4308400 4207200 3977100 2488800 4449300 220870 4768700 2864100 2921200 2748100 4289600 4298300 4112800 3846800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2673000 4768500 0 4698800 2996700 2712100 2639900 4300600 4308400 4207200 3977100 2488800 4449300 220870 4768700 2864100 2921200 2748100 4289600 4298300 4112800 3846800 1 1 0 1 1 1 1 1 1 1 1 280240000 0 280240000 9540 1555 8872 50972;50973 61655;61656 61656 2097 2 ISMPDFDLHLK Unmodified 1314.6642 0.66420836 1555 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 69.959 70.319 3 8.0706E-07 24191 20211116_3446_TMUAki_TMT10x_S_F7 128.97 95.087 8766400 13663000 44545 14507000 9815100 9814300 9790200 5670600 5199200 6724900 9315400 8162500 12752000 752220 14670000 9411300 10195000 9789800 6006100 5636200 6524500 8858800 2 2 1 2 2 2 2 2 2 2 2 3384000 5168100 0 5540800 3728400 5551600 4068800 2377300 2422300 2713800 3661300 3150600 4823800 254600 5626300 3581500 5583600 4058400 2587300 2580300 2636600 3493600 1 1 0 1 1 1 1 1 1 1 1 5382400 8495100 44545 8966200 6086700 4262700 5721300 3293300 2776800 4011100 5654100 5011900 7928600 497620 9043400 5829700 4610900 5731300 3418800 3055900 3887900 5365200 1 1 1 1 1 1 1 1 1 1 1 1188100000 565330000 622800000 9541 1555 8872 50974;50975 61657;61658 61658 2 ISMPDVDLHLK Oxidation (M) 1282.6591 0.65912298 1555 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 1 0 By MS/MS 5 0 1 1 51.175 51.372 3 0.03165 15198 20211116_3433_TMUAki_TMT10x_P_F5 54.7 20.321 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9542 1555 8873 50976 61659 61659 2098 1 ISMPDVDLHLK Unmodified 1266.6642 0.66420836 1555 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS By MS/MS 6 1 1 1 1 1 62.824 63.137 3 0.033221 20017 20211116_3433_TMUAki_TMT10x_P_F5 54.023 34.237 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9543 1555 8873 50977;50978 61660;61661 61660 2 ISNIPSLIFLDATTGK Unmodified 1688.9349 0.93488713 1970 Q6DKJ4;Q6DKJ4-2;Q6DKJ4-3 NXN Nucleoredoxin yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 80.487 80.469 3 2.3932E-07 27936 20211116_3429_TMUAki_TMT10x_P_F2 103.5 71.861 8436500 13588000 128170 13009000 9218600 11346000 10604000 7382100 5758700 7621200 10002000 7856200 12676000 827020 13287000 8881600 11572000 10533000 7712800 6221100 7433400 9517400 3 3 2 3 3 3 3 3 3 3 3 3160200 4933900 0 5080200 2685300 5263500 3432300 2958800 2215800 2787700 3875100 2942400 4604400 252520 5175000 2593400 5299000 3404900 3119500 2366400 2729600 3686800 1 1 0 1 1 1 1 1 1 1 1 5276300 8653700 128170 7928600 6533200 6082400 7171300 4423200 3542900 4833500 6127000 4913700 8072100 574490 8112100 6288200 6273000 7128500 4593300 3854700 4703800 5830500 2 2 2 2 2 2 2 2 2 2 2 1461400000 1033000000 428470000 9544 1970 8874 50979;50980 61662;61663;61664 61662 3 ISNLLSDYGYHLR Unmodified 1549.7889 0.7888916 881 P30876 POLR2B DNA-directed RNA polymerase II subunit RPB2 yes yes 0 0 0 0 By MS/MS 1 0 1 1 65.89 65.652 3 0.0064463 22446 20211116_3439_TMUAki_TMT10x_S_F1 63.79 40.041 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9545 881 8875 50981 61665 61665 1 ISNQVDLSNVCAQYR Unmodified 1765.8417 0.8417318 354 O75694;O75694-2 NUP155 Nuclear pore complex protein Nup155 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 53.427 53.536 3 4.3552E-11 14886 20211116_3434_TMUAki_TMT10x_P_F6 125.14 114.65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9546 354 8876 50982;50983 61666;61667 61666 2 ISPLQFR Unmodified 859.49159 0.49158736 1207 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 51.756 51.491 2 0.045895 16179 20211116_3429_TMUAki_TMT10x_P_F2 71.342 22.284 4892800 8216500 28452 8748100 8694200 9525800 5622500 7796600 7502700 6089400 7224900 4555800 7668900 471830 8898600 8260000 9617500 5922000 7963200 7540500 6017500 6978200 2 2 1 2 2 2 2 2 2 2 2 2754300 4524400 0 4780500 6508200 7712300 3891800 4465200 4425000 3560300 4081100 2564400 4222700 267350 4902700 6173700 7603000 4100900 4676700 4466100 3514500 3947500 1 1 0 1 1 1 1 1 1 1 1 2138500 3692100 28452 3967500 2186000 1813500 1730700 3331400 3077700 2529100 3143800 1991400 3446200 204480 3995900 2086300 2014500 1821000 3286500 3074400 2503100 3030700 1 1 1 1 1 1 1 1 1 1 1 599420000 397750000 201670000 9547 1207 8877 50984;50985;50986 61668;61669 61668 2 ISPSGIDSATTVAAATAAAIATAAPLIK Unmodified 2552.4061 0.40613299 2699 Q9BVV6;Q9BVV6-2;Q9BVV6-4;Q9BVV6-3 KIAA0586 Protein TALPID3 yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 82.731 82.731 3 2.2531E-33 28191 20211116_3442_TMUAki_TMT10x_S_F4 167.99 158.33 1881200 3162900 51341 3014300 2101300 2660000 2198500 1370200 1244400 1505400 2134300 1751900 2950700 206890 3080300 2020400 2702700 2195400 1462200 1339300 1464700 2031300 2 2 2 2 2 2 2 2 2 2 2 1118000 1831400 42822 1713400 1061900 1789700 1253100 768530 708370 868620 1241200 1041300 1708500 131810 1757400 1025600 1795600 1244200 835920 763390 844220 1180800 1 1 1 1 1 1 1 1 1 1 1 763170 1331500 8519.1 1300900 1039400 870320 945380 601630 535990 636770 893090 710650 1242300 75080 1322800 994810 907140 951180 626310 575860 620450 850480 1 1 1 1 1 1 1 1 1 1 1 236420000 111870000 124550000 9548 2699 8878 50987;50988 61670;61671 61671 2 ISPTGSYNKPALR Unmodified 1402.7569 0.75686319 51 CON__Q28107 yes yes 0 0 0 1 By MS/MS 2 0 1 1 39.243 39.328 3 0.065371 9873 20211116_3440_TMUAki_TMT10x_S_F2 43.878 21.68 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9549 51 8879 50989 61672 61672 1 ISQAEEEDQQLLGHLLLVAK Unmodified 2233.1954 0.19541193 2713 Q9BX68 HINT2 Histidine triad nucleotide-binding protein 2, mitochondrial yes yes 0 0 0 0 By MS/MS 4 0.816 1 1 1 3 78.724 78.654 3 3.03E-15 28708 20211116_3441_TMUAki_TMT10x_S_F3 140.95 120.86 2731500 4462700 43089 4514800 3403500 3576700 3980200 2184600 2411400 2747700 3303800 2543700 4164300 276030 4588100 3280600 3670200 3958600 2308300 2553500 2660300 3159400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2731500 4462700 43089 4514800 3403500 3576700 3980200 2184600 2411400 2747700 3303800 2543700 4164300 276030 4588100 3280600 3670200 3958600 2308300 2553500 2660300 3159400 1 1 1 1 1 1 1 1 1 1 1 1326400000 0 1326400000 9550 2713 8880 50990;50991;50992 61673;61674;61675 61673 3 ISQDLALIAR Unmodified 1098.6397 0.63970816 1931 Q5SW79;Q5SW79-2;Q5SW79-3;Q96L14 CEP170;CEP170P1 Centrosomal protein of 170 kDa;Cep170-like protein yes no 0 0 0 0 By matching By MS/MS 6 0 2 1 1 63.479 63.471 2 0.042283 19392 20211116_3445_TMUAki_TMT10x_S_F6 57.149 26.801 5106100 9099600 140540 8269300 6130300 5693000 5135000 8482300 7331200 7158000 7385900 4755300 8487800 568660 8456200 5861500 6021200 5328700 8443800 7364100 7045500 7123200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5106100 9099600 140540 8269300 6130300 5693000 5135000 8482300 7331200 7158000 7385900 4755300 8487800 568660 8456200 5861500 6021200 5328700 8443800 7364100 7045500 7123200 1 1 1 1 1 1 1 1 1 1 1 521460000 252840000 268610000 9551 1931 8881 50993;50994 61676 61676 1 ISQLGYSCFYIHAK Unmodified 1685.8236 0.82356254 810 P26196 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 0 0 0 0 By MS/MS 3 0 1 1 61.125 60.698 3 0.0099953 21505 20211116_3441_TMUAki_TMT10x_S_F3 58.885 46.118 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9552 810 8882 50995 61677 61677 1 ISQMPVILTPLHFDRDPLQK Oxidation (M) 2363.2671 0.26713708 1128 P49915;P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 1 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 66.371 66.181 4 2.4707E-41 20893 20211116_3440_TMUAki_TMT10x_S_F2 202.39 181.16 36754000 61874000 476640 55471000 40436000 53955000 41657000 47179000 47300000 48442000 50236000 34225000 57711000 3090700 57020000 38829000 54907000 42365000 48348000 47977000 47259000 48370000 8 8 6 8 8 8 8 8 8 8 8 9524400 15100000 56755 13958000 9585000 20780000 10925000 11679000 11876000 10986000 12630000 8868500 14085000 843380 14422000 9227700 20544000 11041000 12313000 12067000 10758000 12160000 2 2 2 2 2 2 2 2 2 2 2 27230000 46775000 419890 41514000 30851000 33175000 30732000 35500000 35424000 37456000 37606000 25357000 43626000 2247300 42598000 29602000 34363000 31324000 36035000 35910000 36500000 36210000 6 6 4 6 6 6 6 6 6 6 6 6685300000 3606300000 3079100000 9553 1128 8883 50996;50997;50998;50999 61678;61679;61680;61681;61682;61683;61684;61685 61684 1488 8 ISQMPVILTPLHFDRDPLQK Unmodified 2347.2722 0.27222246 1128 P49915;P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 74.914 74.779 4 7.6441E-32 26188 20211116_3430_TMUAki_TMT10x_P_F3 182.22 145.36 34411000 54877000 121460 58005000 34002000 32547000 36162000 15617000 12822000 16636000 34081000 32039000 51218000 2353200 58573000 32650000 34347000 35845000 16763000 14820000 16206000 32219000 7 7 3 7 7 7 7 7 7 7 7 18907000 27914000 121460 29329000 16294000 22555000 19804000 8466700 7786900 9424000 17759000 17605000 26052000 1543100 29719000 15713000 23079000 19533000 9348000 8801600 9164500 16823000 4 4 3 4 4 4 4 4 4 4 4 15503000 26963000 0 28676000 17708000 9992200 16358000 7150300 5035200 7212300 16322000 14434000 25166000 810170 28854000 16937000 11268000 16313000 7415200 6018400 7041300 15396000 3 3 0 3 3 3 3 3 3 3 3 6855100000 3823500000 3031500000 9554 1128 8883 51000;51001;51002;51003 61686;61687;61688;61689;61690;61691;61692 61689 7 ISQMPVILTPLHFDRDPLQKQPSCQR Oxidation (M) 3119.6008 0.6008436 1128 P49915;P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 1 2 By MS/MS 3 0 1 1 58.786 58.375 5 0.018624 20574 20211116_3441_TMUAki_TMT10x_S_F3 42.708 23.663 1575400 2978100 0 2973800 1993300 2003400 1637500 2811200 2122600 2427500 2736500 1466600 2778800 104910 3019600 1900300 2119000 1694600 2806000 2159900 2386700 2620800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1575400 2978100 0 2973800 1993300 2003400 1637500 2811200 2122600 2427500 2736500 1466600 2778800 104910 3019600 1900300 2119000 1694600 2806000 2159900 2386700 2620800 1 1 0 1 1 1 1 1 1 1 1 279290000 0 279290000 9555 1128 8884 51004 61693 61693 1488 1 ISQRDENGELR Unmodified 1315.648 0.64804102 183 O15355 PPM1G Protein phosphatase 1G yes yes 0 0 0 1 By MS/MS 2 0 1 1 28.5 28.264 3 0.049485 6881 20211116_3429_TMUAki_TMT10x_P_F2 45.853 29.279 137780 225990 0 197460 213860 277480 154470 235300 348720 199210 243040 128260 210770 9401.6 204660 203370 276800 165810 240290 342510 196040 237730 1 1 0 1 1 1 1 1 1 1 1 137780 225990 0 197460 213860 277480 154470 235300 348720 199210 243040 128260 210770 9401.6 204660 203370 276800 165810 240290 342510 196040 237730 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2941200 2941200 0 9556 183 8885 51005 61694 61694 1 ISQSNYIPTQQDVLR Unmodified 1760.9057 0.90571227 563 P08754 GNAI3 Guanine nucleotide-binding protein G(k) subunit alpha yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 3 1 2 54.189 54.291 2;3 1.2183E-43 15602 20211116_3445_TMUAki_TMT10x_S_F6 268.95 212.74 7712900 14045000 192040 15040000 10914000 13260000 8284400 12230000 11920000 11158000 12252000 7182700 13109000 840850 15247000 10409000 13595000 8653300 12454000 11980000 10942000 11809000 5 5 3 5 5 5 5 5 5 5 5 3624300 6531100 63739 6765300 7307300 9574600 5265100 5799100 5725300 5247800 5662000 3375000 6095100 411460 6927200 6959100 9495900 5461600 6070200 5802100 5148000 5463900 2 2 2 2 2 2 2 2 2 2 2 4088600 7513500 128300 8274900 3607200 3685600 3019300 6430500 6195200 5910600 6590000 3807700 7013700 429380 8319400 3450300 4099400 3191700 6384000 6177600 5794000 6344900 3 3 1 3 3 3 3 3 3 3 3 1024400000 580130000 444270000 9557 563 8886 51006;51007;51008 61695;61696;61697;61698;61699 61697 5 ISRLDAELVK Unmodified 1142.6659 0.66592292 3040 Q9NZZ3;Q9NZZ3-2 CHMP5 Charged multivesicular body protein 5 yes no 0 0 0 1 By MS/MS 6 0 1 1 49.12 49.217 3 2.6048E-07 13131 20211116_3434_TMUAki_TMT10x_P_F6 107.09 81.429 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9558 3040 8887 51009 61700 61700 1 ISRLPAYLTIQMVR Oxidation (M) 1675.9443 0.94434638 1220 P54578;P54578-2;P54578-3 USP14 Ubiquitin carboxyl-terminal hydrolase 14 yes no 0 0 1 1 By matching By MS/MS 6 0 2 1 1 57.764 57.827 3 0.0014307 17016 20211116_3445_TMUAki_TMT10x_S_F6 72.315 58.636 3267900 5773300 92645 5831800 3816700 3368500 3038400 4874300 3706400 3984800 4858900 3043400 5387400 364960 5908500 3645700 3617400 3143300 4853200 3782300 3928400 4651600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3267900 5773300 92645 5831800 3816700 3368500 3038400 4874300 3706400 3984800 4858900 3043400 5387400 364960 5908500 3645700 3617400 3143300 4853200 3782300 3928400 4651600 1 1 1 1 1 1 1 1 1 1 1 682760000 290810000 391950000 9559 1220 8888 51010;51011 61701 61701 1639 1 ISRPGDSDDSR Unmodified 1203.548 0.54799262 677 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 1 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 24.799 24.625 3 7.7133E-07 7538 20211116_3441_TMUAki_TMT10x_S_F3 133.07 78.657 220030 381550 6394.7 338080 242520 332240 239170 183410 218500 203230 291690 204910 355860 24516 347880 232840 335480 242130 194590 225790 197670 279120 2 2 2 2 2 2 2 2 2 2 2 123400 203370 2608.1 197920 134710 217960 124120 119840 128180 114800 170280 114920 189740 12820 202590 129050 218600 126580 126650 131720 112330 162960 1 1 1 1 1 1 1 1 1 1 1 96628 178180 3786.6 140160 107810 114280 115040 63570 90316 88436 121410 89998 166120 11697 145280 103780 116880 115550 67937 94066 85347 116150 1 1 1 1 1 1 1 1 1 1 1 21515000 10968000 10547000 9560 677 8889 51012;51013;51014 61702;61703 61703 2 ISSINSISALCEATGADVEEVATAIGMDQR Oxidation (M) 3123.47 0.47000816 283 O60701;O60701-3;O60701-2 UGDH UDP-glucose 6-dehydrogenase yes no 0 0 1 0 By matching By MS/MS 4 0 2 1 1 80.786 80.782 3 0.0015295 27398 20211116_3442_TMUAki_TMT10x_S_F4 50.88 48.901 2696000 4164600 0 3880900 2364700 2708100 2890500 1610300 1626700 2050000 2505200 2510100 3884900 204820 3961600 2279700 2806500 2865300 1705800 1741400 1984000 2389500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2696000 4164600 0 3880900 2364700 2708100 2890500 1610300 1626700 2050000 2505200 2510100 3884900 204820 3961600 2279700 2806500 2865300 1705800 1741400 1984000 2389500 1 1 0 1 1 1 1 1 1 1 1 875450000 424920000 450530000 9561 283 8890 51015;51016 61704 61704 220 1 ISSIQSIVPALEIANAHR Unmodified 1918.0636 0.063609895 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3.07 1.8 3 8 11 2 1 2 7 20 56.285 56.203 2;3 3.0715E-133 25169 20211116_3429_TMUAki_TMT10x_P_F2 384.88 333.43 88296000 146190000 1074600 136150000 97257000 127430000 103540000 82572000 73810000 83913000 106150000 82216000 136380000 7593200 139480000 93445000 129340000 103780000 86257000 77538000 81899000 101400000 42 42 26 42 42 42 42 42 42 42 42 46252000 72852000 705490 69384000 45711000 84490000 53193000 45083000 39815000 45386000 55345000 43069000 67965000 3977000 71254000 44051000 84255000 53150000 47835000 41641000 44314000 52909000 12 12 8 12 12 12 12 12 12 12 12 42043000 73342000 369100 66768000 51546000 42937000 50350000 37488000 33995000 38527000 50806000 39146000 68411000 3616200 68223000 49394000 45089000 50628000 38422000 35896000 37585000 48490000 30 30 18 30 30 30 30 30 30 30 30 38706000000 19240000000 19467000000 9562 613 8891 51017;51018;51019;51020;51021;51022;51023;51024;51025;51026;51027;51028;51029;51030;51031;51032;51033;51034;51035;51036;51037;51038;51039;51040;51041;51042;51043 61705;61706;61707;61708;61709;61710;61711;61712;61713;61714;61715;61716;61717;61718;61719;61720;61721;61722;61723;61724;61725;61726;61727;61728;61729;61730;61731;61732;61733;61734;61735;61736;61737;61738;61739;61740;61741;61742;61743;61744;61745;61746;61747;61748;61749 61710 45 ISSIQSIVPALEIANAHRK Unmodified 2046.1586 0.15857291 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 1 By matching By MS/MS 3.67 0.471 1 2 2 1 65.461 65.342 4 1.9109E-12 21087 20211116_3442_TMUAki_TMT10x_S_F4 131.45 119.09 6149000 10658000 43957 10900000 5898700 6037100 6633200 6207800 5971800 6419000 7947900 5725600 9946300 539950 11030000 5676600 6454000 6669400 6309300 6174400 6260400 7605900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6149000 10658000 43957 10900000 5898700 6037100 6633200 6207800 5971800 6419000 7947900 5725600 9946300 539950 11030000 5676600 6454000 6669400 6309300 6174400 6260400 7605900 2 2 1 2 2 2 2 2 2 2 2 2326800000 1510600000 816160000 9563 613 8892 51044;51045;51046 61750;61751 61750 2 ISSLLEEQFQQGK Unmodified 1505.7726 0.77257283 1338 P62241 RPS8 40S ribosomal protein S8 yes yes 0 0 0 0 By MS/MS By MS/MS 5.48 1.45 1 2 4 5 6 9 16 11 71.562 71.568 2;3 1.0685E-109 22238 20211116_3434_TMUAki_TMT10x_P_F6 382.4 296.6 132900000 222890000 1101900 237220000 161350000 196450000 138420000 155820000 141030000 148130000 168150000 123740000 208030000 11594000 240380000 154140000 201730000 141690000 160240000 144320000 144990000 161370000 23 23 12 23 23 23 23 23 23 23 23 67904000 110280000 481400 117000000 94619000 141860000 85325000 77385000 69863000 74211000 83609000 63225000 102920000 5984000 119250000 90490000 141540000 86556000 81839000 72238000 72609000 80229000 11 11 5 11 11 11 11 11 11 11 11 64996000 112610000 620460 120220000 66728000 54584000 53097000 78432000 71165000 73917000 84542000 60519000 105110000 5610400 121130000 63652000 60191000 55130000 78405000 72082000 72378000 81141000 12 12 7 12 12 12 12 12 12 12 12 37194000000 20758000000 16435000000 9564 1338 8893 51047;51048;51049;51050;51051;51052;51053;51054;51055;51056;51057;51058;51059;51060;51061;51062;51063;51064;51065;51066;51067;51068;51069;51070;51071;51072;51073 61752;61753;61754;61755;61756;61757;61758;61759;61760;61761;61762;61763;61764;61765;61766;61767;61768;61769;61770;61771;61772;61773;61774;61775;61776;61777;61778;61779;61780;61781;61782 61760 31 ISTEVGITNVDLSTVDKDQSIAPK Unmodified 2529.3174 0.31737756 495 P04844;P04844-2 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 67.071 67.246 3;4 1.5894E-11 20472 20211116_3434_TMUAki_TMT10x_P_F6 115.55 96.836 4538600 7255700 8155.3 7308300 5379600 7978800 5250100 5062100 4727300 4976600 5992600 4225900 6770600 387490 7462000 5154900 8021400 5316000 5291400 4877000 4864000 5741700 2 2 1 2 2 2 2 2 2 2 2 3169000 4943500 0 4824000 3533400 6489900 3778800 3469600 3287200 3423800 4027100 2950600 4612400 259670 4954600 3393600 6440900 3804900 3678700 3391900 3345700 3861900 1 1 0 1 1 1 1 1 1 1 1 1369700 2312200 8155.3 2484300 1846200 1488900 1471300 1592500 1440200 1552800 1965500 1275400 2158200 127830 2507400 1761300 1580500 1511100 1612800 1485100 1518200 1879800 1 1 1 1 1 1 1 1 1 1 1 1779700000 1047400000 732300000 9565 495 8894 51074;51075 61783;61784 61783 2 ISTVVSSK Unmodified 819.47018 0.47018322 962 P37108 SRP14 Signal recognition particle 14 kDa protein yes yes 0 0 0 0 By MS/MS 7 0 2 2 39.608 40.254 2 0.001827 11733 20211116_3446_TMUAki_TMT10x_S_F7 138.54 89.186 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9566 962 8895 51076;51077 61785;61786 61785 2 ISVAGVTSSNVGYLAHAIHQVTK Unmodified 2351.2597 0.25974352 471 P00505;P00505-2 GOT2 Aspartate aminotransferase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.745 1 2 3 4 2 67.958 67.78 3;4 6.2518E-57 23518 20211116_3430_TMUAki_TMT10x_P_F3 228.62 213.36 37401000 59719000 589250 65264000 44126000 56800000 42393000 33122000 31949000 34897000 44947000 34828000 55745000 3703000 66061000 42300000 57854000 42768000 34924000 33421000 34009000 42956000 8 8 5 8 8 8 8 8 8 8 8 25145000 39694000 230390 44638000 27119000 47438000 29538000 22930000 23455000 24441000 28469000 23414000 37057000 2285900 45231000 26075000 47604000 29647000 24596000 24306000 23809000 27308000 6 6 3 6 6 6 6 6 6 6 6 12256000 20025000 358850 20625000 17007000 9361300 12854000 10192000 8493800 10456000 16478000 11414000 18688000 1417100 20830000 16225000 10250000 13121000 10328000 9115100 10201000 15648000 2 2 2 2 2 2 2 2 2 2 2 16104000000 9212300000 6891600000 9567 471 8896 51078;51079;51080;51081;51082;51083 61787;61788;61789;61790;61791;61792;61793;61794 61788 8 ISVATGALEAAQGSK Unmodified 1401.7464 0.74635808 1160 P51610;P51610-2;P51610-4 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 58.275 58.797 2;3 1.4549E-27 18905 20211116_3435_TMUAki_TMT10x_P_F7 177.16 148.99 11405000 19034000 0 19514000 10151000 9685500 8806800 13754000 13025000 12211000 15183000 10619000 17763000 895020 19727000 9697200 10565000 9134000 13732000 13143000 11989000 14580000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11405000 19034000 0 19514000 10151000 9685500 8806800 13754000 13025000 12211000 15183000 10619000 17763000 895020 19727000 9697200 10565000 9134000 13732000 13143000 11989000 14580000 2 2 0 2 2 2 2 2 2 2 2 511170000 0 511170000 9568 1160 8897 51084;51085 61795;61796;61797 61795 3 ISVFRPGLR Unmodified 1043.624 0.62399852 1514 Q04837 SSBP1 Single-stranded DNA-binding protein, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 6 0.707 1 2 1 1 3 42.686 42.851 3 1.0643E-05 12917 20211116_3446_TMUAki_TMT10x_S_F7 140.88 90.002 528200 889990 1036.3 1011200 552390 412840 407350 698400 697610 638650 809750 491820 830900 45096 1014100 526070 463900 429760 693880 700970 626200 777670 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 528200 889990 1036.3 1011200 552390 412840 407350 698400 697610 638650 809750 491820 830900 45096 1014100 526070 463900 429760 693880 700970 626200 777670 1 1 1 1 1 1 1 1 1 1 1 135550000 0 135550000 9569 1514 8898 51086;51087;51088;51089 61798;61799;61800;61801 61801 4 ISVGSDSDLVIWDPDAVK Unmodified 1914.9575 0.95747307 1692 Q14195-2;Q14195 DPYSL3 Dihydropyrimidinase-related protein 3 yes no 0 0 0 0 By MS/MS 4 0 1 1 78.366 78.379 3 0.10372 26051 20211116_3431_TMUAki_TMT10x_P_F4 21.667 6.2458 4088600 6800800 0 6303400 4350900 8365000 5439400 4931300 5067800 5801100 5681700 3806500 6344000 289670 6496500 4195700 8317400 5449000 5213100 5193600 5629800 5462000 1 1 0 1 1 1 1 1 1 1 1 4088600 6800800 0 6303400 4350900 8365000 5439400 4931300 5067800 5801100 5681700 3806500 6344000 289670 6496500 4195700 8317400 5449000 5213100 5193600 5629800 5462000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 780550000 780550000 0 9570 1692 8899 51090 61802 61802 1 ISVMGGEQAANVLATITK Oxidation (M) 1817.9557 0.95569893 2864 Q9HCC0;Q9HCC0-2 MCCC2 Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 8 0 2 1 1 75.727 75.68 3 5.5424E-05 24594 20211116_3436_TMUAki_TMT10x_P_F8 78.794 65.132 5981100 10424000 170450 8785100 8681400 13582000 8986600 12023000 11229000 11504000 9701600 5570300 9720200 692550 9149700 8342200 13506000 9169000 12287000 11271000 11256000 9406100 2 2 2 2 2 2 2 2 2 2 2 3683800 6340700 87454 5590300 4550700 9200500 5904100 6249500 6376100 6260800 5485000 3430700 5913700 399060 5810000 4402800 9083800 5932600 6503300 6434300 6114100 5318800 1 1 1 1 1 1 1 1 1 1 1 2297300 4082900 82996 3194800 4130700 4381500 3082600 5773200 4852700 5242900 4216600 2139600 3806500 293490 3339700 3939400 4421700 3236400 5783700 4836700 5142300 4087300 1 1 1 1 1 1 1 1 1 1 1 1250500000 878670000 371820000 9571 2864 8900 51091;51092 61803;61804 61803 2987 2 ISVNNVLPVFDNLMQQK Oxidation (M) 1974.0244 0.024447197 536 P07339 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes yes 0 0 1 0 By MS/MS By MS/MS 3.5 3.2 3 1 2 3 3 78.425 78.406 2;3 5.6246E-08 25634 20211116_3428_TMUAki_TMT10x_P_F1 113.98 92.107 28726000 49132000 1103200 43868000 35546000 45123000 36904000 28882000 29999000 32050000 36093000 26755000 45826000 3432300 45143000 34179000 45526000 37148000 30280000 31037000 31171000 34629000 7 7 6 7 7 7 7 7 7 7 7 14477000 23603000 571280 20674000 13791000 25582000 16327000 14087000 14406000 15272000 17141000 13484000 22013000 1723000 21371000 13322000 25500000 16369000 14938000 14837000 14867000 16451000 3 3 3 3 3 3 3 3 3 3 3 14249000 25529000 531960 23194000 21755000 19541000 20576000 14795000 15593000 16778000 18952000 13271000 23813000 1709200 23772000 20857000 20026000 20779000 15342000 16201000 16305000 18178000 4 4 3 4 4 4 4 4 4 4 4 4551000000 1794700000 2756300000 9572 536 8901 51093;51094;51095;51096;51097;51098 61805;61806;61807;61808;61809;61810;61811;61812 61805 463 8 ISVNNVLPVFDNLMQQK Unmodified 1958.0295 0.029532575 536 P07339 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes yes 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 80.281 80.248 3 1.0002E-15 27846 20211116_3429_TMUAki_TMT10x_P_F2 152.68 126.81 20055000 29634000 162370 31652000 19323000 21028000 23057000 6927700 6858800 10245000 19756000 18672000 27659000 1580500 31989000 18617000 21761000 22691000 7854500 8144100 9868800 18658000 4 4 2 4 4 4 4 4 4 4 4 15070000 21370000 35445 23722000 12794000 16622000 16451000 5220000 5084800 7569000 14779000 14030000 19949000 1027400 23928000 12347000 17115000 16144000 5953100 6014300 7295500 13957000 3 3 1 3 3 3 3 3 3 3 3 4984800 8264000 126930 7929600 6529000 4406000 6606400 1707700 1774000 2675600 4976200 4642200 7709900 553190 8060500 6270000 4645200 6547500 1901400 2129800 2573300 4701200 1 1 1 1 1 1 1 1 1 1 1 4470500000 2543200000 1927300000 9573 536 8901 51099;51100;51101 61813;61814;61815;61816 61813 4 ISVPVHSFASLNIK Unmodified 1510.8508 0.85076357 995 P41219;P41219-2 PRPH Peripherin yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 62.445 62.342 3 2.1421E-19 19918 20211116_3442_TMUAki_TMT10x_S_F4 173.06 152.95 17361000 27291000 309030 29276000 21559000 36329000 20707000 19640000 20364000 19657000 21514000 16167000 25473000 1698200 29832000 20664000 36199000 21038000 20812000 20773000 19198000 20718000 4 4 3 4 4 4 4 4 4 4 4 14282000 21719000 260310 23928000 17871000 32684000 17430000 16051000 16607000 15893000 17386000 13299000 20274000 1388900 24386000 17134000 32382000 17678000 17154000 16959000 15528000 16748000 3 3 2 3 3 3 3 3 3 3 3 3079300 5572400 48719 5347700 3688700 3644900 3276700 3589500 3757000 3764800 4127300 2867500 5198800 309230 5445900 3529500 3816900 3360100 3657600 3814200 3669600 3970000 1 1 1 1 1 1 1 1 1 1 1 1660200000 1037300000 622940000 9574 995 8902 51102;51103;51104 61817;61818;61819;61820 61820 4 ISVREPMQTGIK Unmodified 1357.7388 0.73877028 805 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 42.215 42.455 3 6.9613E-12 11005 20211116_3436_TMUAki_TMT10x_P_F8 166.03 121.18 7593800 11867000 96914 15484000 20340000 12850000 9768600 6534300 5846300 5711700 10456000 7071200 11087000 882460 15502000 19242000 13112000 10340000 6937700 6282800 5612200 9944100 4 4 3 4 4 4 4 4 4 4 4 5547700 8487000 93580 11105000 18453000 11632000 8371900 5043500 4444500 4304200 7801600 5166000 7929000 711940 11152000 17445000 11669000 8897500 5438300 4812500 4234200 7422000 3 3 2 3 3 3 3 3 3 3 3 2046200 3380100 3333.4 4379000 1886900 1218800 1396700 1490800 1401700 1407500 2654600 1905200 3157800 170520 4349500 1797100 1442700 1442600 1499500 1470300 1378100 2522000 1 1 1 1 1 1 1 1 1 1 1 535890000 382700000 153190000 9575 805 8903 51105;51106;51107 61821;61822;61823;61824 61823 4 ISVREPMQTGIK Oxidation (M) 1373.7337 0.7336849 805 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 1 1 By MS/MS By MS/MS 8 0 2 1 1 36.695 37.206 3 3.8224E-05 8837 20211116_3436_TMUAki_TMT10x_P_F8 88.163 66.912 404720 686150 5445.2 799900 389400 272120 331840 332640 310900 313760 574260 376870 640680 38414 800110 372260 311130 338960 334590 326550 307210 545820 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 404720 686150 5445.2 799900 389400 272120 331840 332640 310900 313760 574260 376870 640680 38414 800110 372260 311130 338960 334590 326550 307210 545820 2 2 2 2 2 2 2 2 2 2 2 42725000 0 42725000 9576 805 8903 51108;51109 61825;61826;61827 61825 952 3 ISVVPTQPGLLLSSSGDGTLR Unmodified 2096.1477 0.14773345 1261 P57081;P57081-3;P57081-2 WDR4 tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 75.538 75.5 3 1.7745E-10 26412 20211116_3439_TMUAki_TMT10x_S_F1 113.63 99.979 4802000 7840200 92392 7182600 5112800 6894000 5643700 4519500 4390400 4989400 5777000 4471500 7313300 444830 7369600 4918500 6987600 5658100 4729000 4570600 4853600 5530000 3 3 2 3 3 3 3 3 3 3 3 1894400 3046300 34406 2688900 1521200 3795900 2163900 1989300 1849400 2147200 2195400 1764100 2841200 183900 2784900 1476800 3758100 2151600 2118500 1907500 2090600 2107100 1 1 1 1 1 1 1 1 1 1 1 2907700 4793900 57986 4493800 3591600 3098100 3479800 2530200 2541100 2842200 3581600 2707400 4472100 260940 4584700 3441600 3229500 3506500 2610500 2663100 2763000 3422800 2 2 1 2 2 2 2 2 2 2 2 1234900000 493890000 741040000 9577 1261 8904 51110;51111 61828;61829;61830 61830 3 ISVYYNEASSHK Unmodified 1396.6623 0.6622941 1640 Q13509 TUBB3 Tubulin beta-3 chain yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 1.12 2 2 2 2 4 4 42.181 42.342 3 8.3813E-11 10474 20211116_3447_TMUAki_TMT10x_S_F8 160.18 136.33 16920000 26446000 164730 33140000 28599000 30131000 18566000 15841000 17849000 15803000 20189000 15754000 24702000 1622900 33291000 27173000 30560000 19334000 16826000 18272000 15435000 19403000 9 9 5 9 9 9 9 9 9 9 9 12972000 20020000 133940 25063000 25219000 26566000 15196000 12204000 13622000 12057000 15281000 12078000 18700000 1283700 25235000 23931000 26649000 15890000 13129000 13986000 11781000 14689000 6 6 3 6 6 6 6 6 6 6 6 3948200 6425700 30790 8077600 3380200 3564600 3369400 3636700 4226600 3745900 4908800 3676300 6002100 339240 8056300 3242100 3911400 3444800 3697100 4286500 3653900 4714200 3 3 2 3 3 3 3 3 3 3 3 1336400000 955080000 381320000 9578 1640 8905 51112;51113;51114;51115;51116;51117;51118;51119 61831;61832;61833;61834;61835;61836;61837;61838;61839;61840 61840 10 ISVYYNEATGGK Unmodified 1300.6299 0.62993134 539 P07437 TUBB Tubulin beta chain yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 1.34 1 4 4 4 4 1 9 9 53.685 53.904 2;3 4.3568E-60 16853 20211116_3435_TMUAki_TMT10x_P_F7 325.73 266.38 211240000 288010000 2456100 366970000 373880000 325580000 221100000 241470000 270560000 199400000 292460000 196700000 269040000 21555000 368170000 354770000 332340000 233790000 248490000 273870000 196480000 281450000 20 20 13 20 20 20 20 20 20 20 20 131510000 173000000 1533900 220340000 303190000 261290000 147590000 154520000 170830000 124530000 188920000 122460000 161600000 14612000 222050000 286890000 261260000 158570000 161600000 173410000 122860000 181680000 12 12 9 12 12 12 12 12 12 12 12 79736000 115020000 922200 146630000 70688000 64289000 73503000 86945000 99737000 74870000 103540000 74246000 107440000 6942800 146130000 67880000 71082000 75222000 86895000 100450000 73619000 99767000 8 8 4 8 8 8 8 8 8 8 8 47153000000 25070000000 22083000000 9579 539 8906 51120;51121;51122;51123;51124;51125;51126;51127;51128;51129;51130;51131;51132;51133;51134;51135;51136;51137 61841;61842;61843;61844;61845;61846;61847;61848;61849;61850;61851;61852;61853;61854;61855;61856;61857;61858;61859;61860 61851 20 ISYFTFIGTPVQATNMNDFKR Oxidation (M) 2465.2049 0.20493076 213 O43396 TXNL1 Thioredoxin-like protein 1 yes yes 0 0 1 1 By MS/MS By MS/MS 4.43 0.495 4 3 3 4 74.183 74.171 3;4 2.5286E-07 24279 20211116_3431_TMUAki_TMT10x_P_F4 86.727 70.042 17724000 31813000 186850 26390000 23341000 32865000 23519000 25254000 23222000 24352000 25300000 16504000 29665000 1697600 27402000 22395000 32910000 23838000 26033000 23712000 23821000 24341000 8 8 4 8 8 8 8 8 8 8 8 7877800 14030000 52690 11130000 8219900 21350000 10630000 13762000 12777000 13202000 12457000 7335300 13081000 698650 11712000 7944800 20949000 10723000 14358000 12893000 12916000 12027000 4 4 2 4 4 4 4 4 4 4 4 9845800 17783000 134160 15260000 15121000 11514000 12889000 11492000 10446000 11151000 12842000 9168300 16584000 998940 15690000 14450000 11961000 13115000 11675000 10819000 10905000 12314000 4 4 2 4 4 4 4 4 4 4 4 3206700000 1402000000 1804700000 9580 213 8907 51138;51139;51140;51141;51142;51143;51144 61861;61862;61863;61864;61865;61866;61867;61868 61861 170 8 ISYSGQFLVK Unmodified 1140.6179 0.61791009 3032 Q9NZI8;Q9NZI8-2 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.71 2.25 2 3 1 1 4 3 61.809 61.563 2;3 2.7576E-33 19010 20211116_3440_TMUAki_TMT10x_S_F2 278.02 185.83 33315000 60001000 256590 52256000 50550000 70077000 41065000 65545000 58463000 52421000 53011000 31020000 55958000 2989500 54123000 48231000 70188000 42688000 66477000 58522000 51737000 51306000 8 8 4 8 8 8 8 8 8 8 8 17943000 31603000 143290 27967000 32401000 53216000 27811000 35955000 31607000 28842000 28400000 16708000 29475000 1770900 29166000 30957000 52268000 28567000 37215000 31875000 28462000 27496000 4 4 2 4 4 4 4 4 4 4 4 15372000 28398000 113300 24289000 18150000 16860000 13254000 29590000 26856000 23578000 24610000 14312000 26483000 1218600 24958000 17273000 17920000 14121000 29263000 26647000 23275000 23810000 4 4 2 4 4 4 4 4 4 4 4 4561500000 2660000000 1901400000 9581 3032 8908 51145;51146;51147;51148;51149;51150;51151 61869;61870;61871;61872;61873;61874;61875;61876;61877;61878 61877 10 ITADLLSNGIDVYPQK Unmodified 1745.92 0.91996535 3118 Q9UHD8-5;Q9UHD8;Q9UHD8-2;Q9UHD8-7;Q9UHD8-3;Q9UHD8-4;Q9UHD8-9;Q9UHD8-8 SEPT9 Septin-9 yes no 0 0 0 0 By MS/MS By MS/MS 6.57 0.495 3 4 4 3 76.902 76.935 2;3 1.4024E-14 26558 20211116_3435_TMUAki_TMT10x_P_F7 130.56 98.309 19287000 31955000 425290 30106000 21083000 26029000 23212000 17837000 16333000 18829000 21776000 17961000 29810000 2018100 30783000 20295000 26584000 23221000 18579000 17111000 18349000 20838000 4 4 3 4 4 4 4 4 4 4 4 9938200 16035000 155480 15264000 9198200 15805000 11073000 9075500 8365200 9261200 11011000 9254600 14959000 956080 15634000 8876000 15917000 11050000 9572500 8722500 9037300 10540000 2 2 1 2 2 2 2 2 2 2 2 9348900 15920000 269810 14843000 11885000 10224000 12140000 8761600 7968200 9567900 10765000 8706800 14851000 1062100 15149000 11419000 10667000 12171000 9006100 8388100 9311300 10298000 2 2 2 2 2 2 2 2 2 2 2 2703100000 1248300000 1454800000 9582 3118 8909 51152;51153;51154;51155;51156;51157;51158 61879;61880;61881;61882;61883;61884;61885 61882 7 ITADLLSNGIDVYPQKEFDEDSEDRLVNEK Unmodified 3451.6631 0.66308855 3118 Q9UHD8-5;Q9UHD8;Q9UHD8-2;Q9UHD8-7;Q9UHD8-3;Q9UHD8-4;Q9UHD8-9;Q9UHD8-8 SEPT9 Septin-9 yes no 0 0 0 2 By MS/MS 2 0 1 1 76.074 76.021 4 3.5759E-06 24862 20211116_3440_TMUAki_TMT10x_S_F2 71.67 59.467 1436900 3106400 27215 1750000 3388400 4114100 2532800 4848200 4125400 4285900 3566400 1338100 2893500 171830 1916500 3229100 4061800 2663200 4875400 4107300 4209000 3457700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1436900 3106400 27215 1750000 3388400 4114100 2532800 4848200 4125400 4285900 3566400 1338100 2893500 171830 1916500 3229100 4061800 2663200 4875400 4107300 4209000 3457700 1 1 1 1 1 1 1 1 1 1 1 348690000 0 348690000 9583 3118 8910 51159 61886 61886 1 ITAEEMYDIFGK Oxidation (M) 1431.6592 0.65918256 3269 Q9Y3B4 SF3B6 Splicing factor 3B subunit 6 yes yes 0 0 1 0 By MS/MS By MS/MS 4.09 1.08 1 2 4 3 1 6 5 68.661 68.569 2;3 0.00015339 22011 20211116_3431_TMUAki_TMT10x_P_F4 88.187 66.314 38089000 68914000 462230 61900000 46739000 77191000 48956000 61273000 62891000 60989000 57386000 35467000 64278000 3566000 63873000 44890000 77336000 49973000 63093000 63175000 59577000 55528000 11 11 7 11 11 11 11 11 11 11 11 20933000 37362000 67068 33851000 26519000 55744000 29723000 34369000 35129000 34411000 31629000 19491000 34849000 1756400 35109000 25504000 54957000 30149000 36024000 35377000 33606000 30619000 6 6 3 6 6 6 6 6 6 6 6 17156000 31552000 395160 28049000 20221000 21447000 19233000 26904000 27762000 26578000 25757000 15977000 29428000 1809600 28763000 19386000 22379000 19824000 27069000 27799000 25971000 24909000 5 5 4 5 5 5 5 5 5 5 5 4662000000 2703500000 1958500000 9584 3269 8911 51160;51161;51162;51163;51164;51165;51166;51167;51168;51169;51170 61887;61888;61889;61890;61891;61892;61893;61894;61895;61896;61897 61891 3243 11 ITAEEMYDIFGK Unmodified 1415.6643 0.66426794 3269 Q9Y3B4 SF3B6 Splicing factor 3B subunit 6 yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 1 3 42.564 42.686 2;3 8.0023E-08 25351 20211116_3444_TMUAki_TMT10x_S_F5 119.27 98.44 3538700 5372900 36098 6608900 6073100 5702700 3949700 4227300 5115500 3712700 4702800 3295200 5018100 362520 6641300 5772000 5832300 4153400 4357100 5138400 3647200 4549400 2 2 2 2 2 2 2 2 2 2 2 2075100 3078900 32112 3699200 4744300 4533000 2788600 2240200 2956900 2009300 2488500 1932400 2875300 239350 3742500 4501800 4515000 2936100 2386500 2984100 1971900 2415000 1 1 1 1 1 1 1 1 1 1 1 1463600 2294000 3987 2909600 1328900 1169700 1161000 1987100 2158600 1703400 2214300 1362800 2142800 123170 2898800 1270200 1317300 1217400 1970600 2154300 1675300 2134400 1 1 1 1 1 1 1 1 1 1 1 154830000 99250000 55575000 9585 3269 8911 51171;51172;51173;51174 61898;61899;61900;61901 61899 4 ITAPTHVPLQYIGPNQPR Unmodified 2001.0796 0.07959431 2883 Q9NP81;Q9NP81-2 SARS2 Serine--tRNA ligase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 52.217 51.954 3 5.0003E-09 16381 20211116_3429_TMUAki_TMT10x_P_F2 119.45 108.18 4046300 6693200 15434 7753900 4680400 5110800 3955600 4751700 5078100 4689500 5358200 3767300 6249400 320290 7795800 4468000 5361500 4085000 4847500 5126900 4582600 5160200 3 3 1 3 3 3 3 3 3 3 3 1463700 2221900 0 2490200 2225300 2859000 1757300 1555800 1787400 1681100 1810500 1362800 2074200 129640 2527000 2121800 2860600 1807900 1651400 1817900 1636600 1745800 1 1 0 1 1 1 1 1 1 1 1 2582700 4471300 15434 5263600 2455100 2251700 2198300 3195900 3290700 3008400 3547700 2404600 4175200 190650 5268800 2346200 2500900 2277100 3196100 3309100 2945900 3414400 2 2 1 2 2 2 2 2 2 2 2 561350000 284610000 276740000 9586 2883 8912 51175;51176;51177 61902;61903;61904 61902 3 ITAQSIEELCAVNLYGPDAQVDR Unmodified 2561.2432 0.24316676 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS 4 0 1 1 78.13 78.081 3 8.2731E-06 26306 20211116_3442_TMUAki_TMT10x_S_F4 78.202 63.893 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9587 1433 8913 51178 61905 61905 1 ITCLCQVPQNAANR Unmodified 1643.7872 0.78719381 1104 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 44.66 44.639 3 0.0046221 13874 20211116_3439_TMUAki_TMT10x_S_F1 60.345 46.6 6626100 10512000 141520 11237000 10196000 11402000 7440100 8780400 9106300 8219200 9745900 6170600 9811900 727530 11415000 9715500 11546000 7742500 9042800 9213800 8050400 9381700 4 4 3 4 4 4 4 4 4 4 4 4341600 6625400 106150 6760500 8301100 9480200 5703400 5565500 5862600 5200800 6194500 4043300 6182700 514330 6927900 7900600 9402100 5926000 5845300 5969000 5094400 5965300 2 2 2 2 2 2 2 2 2 2 2 2284400 3887000 35375 4477000 1894900 1921400 1736600 3214900 3243700 3018400 3551400 2127300 3629200 213190 4487400 1814900 2144100 1816500 3197500 3244900 2956000 3416400 2 2 1 2 2 2 2 2 2 2 2 740370000 492530000 247840000 9588 1104 8914 51179;51180;51181;51182 61906;61907;61908;61909 61908 4 ITDLANLSAANHDAAIFPGGFGAAK Unmodified 2441.2339 0.2339227 2 P0DPI2;A0A0B4J2D5;P0DPI2-2;A0A0B4J2D5-2 yes no 0 0 0 0 By MS/MS By MS/MS 7.75 0.433 1 3 2 2 76.934 76.939 3;4 1.3594E-29 25166 20211116_3436_TMUAki_TMT10x_P_F8 166.49 149.12 17114000 28616000 87308 28884000 17346000 25897000 19247000 13593000 15219000 15680000 19247000 15933000 26702000 922120 29403000 16667000 26290000 19299000 14504000 15802000 15228000 18442000 4 4 1 4 4 4 4 4 4 4 4 10668000 17065000 0 17720000 8780000 17607000 10482000 7780800 8537300 9254800 11298000 9930600 15925000 579590 18030000 8443400 17723000 10483000 8451000 8868300 8978000 10814000 2 2 0 2 2 2 2 2 2 2 2 6445600 11551000 87308 11164000 8566400 8289300 8765400 5812700 6681400 6425400 7948500 6002200 10777000 342530 11373000 8224100 8566200 8816200 6053300 6933300 6250200 7628400 2 2 1 2 2 2 2 2 2 2 2 4578100000 3212300000 1365800000 9589 2 8915 51183;51184;51185;51186 61910;61911;61912;61913 61910 4 ITDVIIGFQACCR Unmodified 1551.7538 0.75376842 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS 1 0 1 1 73.846 73.753 2 0.045867 25686 20211116_3439_TMUAki_TMT10x_S_F1 57.204 31.582 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9590 934 8916 51187 61914 61914 1 ITEDYYVHLIADNLPVATR Unmodified 2202.1321 0.13208339 2340 Q92544 TM9SF4 Transmembrane 9 superfamily member 4 yes yes 0 0 0 0 By MS/MS 6 0 1 1 78.457 78.435 3 0.067112 25096 20211116_3434_TMUAki_TMT10x_P_F6 35.748 17.017 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9591 2340 8917 51188 61915 61915 1 ITEFCHR Unmodified 961.44399 0.44398525 533 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 By MS/MS By MS/MS 4.25 0.829 1 1 2 2 2 30.527 30.479 3 0.00064652 7448 20211116_3431_TMUAki_TMT10x_P_F4 134.06 113.54 2339200 3637200 52069 3363200 3718700 5510400 2894900 2400500 2707500 3597300 2887900 2178400 3392900 261360 3482400 3548100 5411300 2973700 2633400 2769000 3464000 2780200 4 4 3 4 4 4 4 4 4 4 4 1306500 1997400 21443 1925200 2563000 3285600 1589100 1525800 1676700 1944600 1713800 1216600 1863500 145900 1989500 2434300 3223700 1665500 1652600 1703300 1881900 1652100 2 2 2 2 2 2 2 2 2 2 2 1032700 1639800 30626 1437900 1155700 2224800 1305800 874740 1030800 1652800 1174100 961800 1529400 115460 1492900 1113800 2187600 1308200 980800 1065800 1582100 1128100 2 2 1 2 2 2 2 2 2 2 2 212190000 145300000 66894000 9592 533 8918 51189;51190;51191;51192 61916;61917;61918;61919 61916 4 ITELKEEIEVK Unmodified 1329.7391 0.73914744 2906 Q9NQP4 PFDN4 Prefoldin subunit 4 yes yes 0 0 0 1 By MS/MS By MS/MS 4.38 1.32 1 1 2 2 2 3 5 62.445 62.382 3 1.4679E-11 18874 20211116_3445_TMUAki_TMT10x_S_F6 131.32 95.908 114530000 179630000 1409300 175470000 139770000 155600000 127290000 113150000 108780000 112920000 138990000 106640000 167600000 10842000 179010000 133760000 158780000 129200000 117180000 112550000 110300000 133140000 10 10 7 10 10 10 10 10 10 10 10 56492000 85422000 853380 84403000 66903000 91842000 56379000 53559000 52582000 54048000 66722000 52604000 79704000 5373800 86288000 63921000 92243000 57620000 56402000 54161000 52766000 63927000 4 4 3 4 4 4 4 4 4 4 4 58035000 94212000 555880 91068000 72862000 63756000 70914000 59588000 56197000 58875000 72270000 54040000 87898000 5468600 92718000 69844000 66542000 71578000 60774000 58385000 57530000 69218000 6 6 4 6 6 6 6 6 6 6 6 6184100000 3118500000 3065700000 9593 2906 8919 51193;51194;51195;51196;51197;51198;51199;51200 61920;61921;61922;61923;61924;61925;61926;61927;61928;61929;61930 61930 11 ITESDLSQLTASIR Unmodified 1532.8046 0.80460124 1703 Q14315;Q14315-2 FLNC Filamin-C yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 3 3 2 4 71.288 71.261 2;3 5.141E-23 23363 20211116_3433_TMUAki_TMT10x_P_F5 180.24 152.47 16407000 27828000 46386 25646000 21089000 34824000 21839000 24720000 23056000 23757000 22756000 15276000 25958000 1341800 26454000 20235000 34684000 22150000 25615000 23392000 23242000 21961000 5 5 2 5 5 5 5 5 5 5 5 13704000 22404000 46386 20858000 17067000 31752000 18270000 20231000 18750000 19324000 18637000 12759000 20900000 1141900 21550000 16392000 31416000 18484000 21124000 19050000 18910000 17982000 4 4 2 4 4 4 4 4 4 4 4 2703100 5423800 0 4788300 4022900 3072000 3568500 4488700 4305600 4433100 4118700 2516500 5058600 199870 4904000 3843200 3267200 3666300 4490600 4341300 4331900 3979000 1 1 0 1 1 1 1 1 1 1 1 1658800000 1105100000 553780000 9594 1703 8920 51201;51202;51203;51204;51205;51206 61931;61932;61933;61934;61935;61936;61937;61938 61931 8 ITESSLVEITEHK Unmodified 1484.7722 0.77223848 2586 Q99590;Q99590-2 SCAF11 Protein SCAF11 yes no 0 0 0 0 By MS/MS 3 0 1 1 57.425 57.192 3 0.043138 19003 20211116_3430_TMUAki_TMT10x_P_F3 39.999 20.788 5072400 6667900 0 6097700 6203100 6840900 4877000 4785900 4159600 4845800 6755600 4722400 6219700 377070 6272000 5910600 6877000 4994100 4971400 4355200 4730200 6436500 1 1 0 1 1 1 1 1 1 1 1 5072400 6667900 0 6097700 6203100 6840900 4877000 4785900 4159600 4845800 6755600 4722400 6219700 377070 6272000 5910600 6877000 4994100 4971400 4355200 4730200 6436500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 140700000 140700000 0 9595 2586 8921 51207 61939 61939 1 ITEYLCEPLRK Unmodified 1420.7384 0.73843593 1391;1557 P63010;P63010-2;P63010-3;Q10567;Q10567-3;Q10567-2;Q10567-4 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 no no 0 0 0 1 By MS/MS 7 0 1 1 56.295 56.82 3 0.00082244 18599 20211116_3446_TMUAki_TMT10x_S_F7 79.82 61.408 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9596 1391;1557 8922 51208 61940 61940 1 ITFDAFPGEPDK Unmodified 1335.6347 0.63468237 1574 Q12904;Q12904-2 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 yes no 0 0 0 0 By MS/MS 5 0.816 1 1 1 3 68.235 68.284 3 0.00025105 22141 20211116_3433_TMUAki_TMT10x_P_F5 83.617 67.393 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9597 1574 8923 51209;51210;51211 61941;61942;61943 61942 3 ITFDDYIACCVK Unmodified 1503.6738 0.67378676 877 P30626;P30626-2;P30626-3 SRI Sorcin yes no 0 0 0 0 By MS/MS By MS/MS 6.09 0.793 3 4 4 6 5 71.808 71.924 2;3 3.8571E-28 22877 20211116_3445_TMUAki_TMT10x_S_F6 232.41 190.41 36226000 60023000 429840 60360000 43050000 58754000 42655000 38892000 27882000 40651000 43452000 33732000 56009000 3372000 61529000 41286000 59508000 42830000 40598000 29564000 39629000 41435000 9 9 7 9 9 9 9 9 9 9 9 21947000 35806000 324280 35949000 27187000 45047000 28375000 24360000 17964000 24625000 26459000 20437000 33412000 2067600 36799000 26110000 44865000 28398000 25819000 19032000 24039000 25261000 6 6 4 6 6 6 6 6 6 6 6 14279000 24217000 105560 24411000 15863000 13707000 14280000 14532000 9917800 16026000 16994000 13296000 22598000 1304400 24730000 15177000 14643000 14432000 14778000 10532000 15590000 16174000 3 3 3 3 3 3 3 3 3 3 3 3913200000 2309700000 1603500000 9598 877 8924 51212;51213;51214;51215;51216;51217;51218;51219;51220;51221;51222 61944;61945;61946;61947;61948;61949;61950;61951;61952;61953;61954;61955;61956 61954 13 ITFHGEGDQEPGLEPGDIIIVLDQK Unmodified 2719.3705 0.37047576 889 P31689;P31689-2 DNAJA1 DnaJ homolog subfamily A member 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.23 0.89 3 5 4 1 6 7 68.671 68.616 3;4 5.1844E-38 27181 20211116_3429_TMUAki_TMT10x_P_F2 184.3 168.6 43397000 72396000 169400 64738000 43735000 51994000 47324000 26390000 27575000 32579000 47040000 40407000 67525000 3204200 66394000 42021000 53178000 47204000 28309000 29607000 31563000 44775000 12 12 3 12 12 12 12 12 12 12 12 23343000 38757000 59394 34242000 18983000 32667000 23315000 13433000 15600000 17063000 25577000 21734000 36147000 1442000 35228000 18304000 32944000 23184000 14737000 16562000 16515000 24364000 5 5 1 5 5 5 5 5 5 5 5 20054000 33640000 110000 30496000 24752000 19326000 24010000 12957000 11974000 15516000 21463000 18673000 31378000 1762200 31166000 23717000 20234000 24020000 13572000 13045000 15048000 20411000 7 7 2 7 7 7 7 7 7 7 7 14583000000 8391100000 6191700000 9599 889 8925 51223;51224;51225;51226;51227;51228;51229;51230;51231;51232;51233;51234;51235 61957;61958;61959;61960;61961;61962;61963;61964;61965;61966;61967;61968 61959 12 ITFTALSSEKR Unmodified 1251.6823 0.68230126 1480 Q01167;Q01167-2;Q01167-3 FOXK2 Forkhead box protein K2 yes no 0 0 0 1 By MS/MS 2 0 1 1 48.711 48.607 3 0.042264 13710 20211116_3440_TMUAki_TMT10x_S_F2 51.264 37.886 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9600 1480 8926 51236 61969 61969 1 ITFTGEADQAPGVEPGDIVLLLQEK Unmodified 2639.3694 0.36941313 298 O60884 DNAJA2 DnaJ homolog subfamily A member 2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 1.12 1 4 2 1 3 5 81.075 81.066 3;4 5.7314E-08 27166 20211116_3431_TMUAki_TMT10x_P_F4 91.175 78.694 12266000 20136000 151730 17053000 13407000 19923000 15807000 12262000 14638000 14001000 16387000 11422000 18778000 1140600 17658000 12923000 19947000 15872000 12906000 15005000 13602000 15754000 5 5 4 5 5 5 5 5 5 5 5 7488300 10926000 70726 9555700 6411000 13122000 7663600 6450200 7482000 6825000 8602300 6972600 10190000 637900 9898500 6180800 12998000 7702400 6906000 7659400 6650200 8263600 3 3 2 3 3 3 3 3 3 3 3 4777900 9210200 81004 7497700 6996200 6801200 8143300 5811900 7156100 7176100 7784900 4449300 8587700 502690 7759400 6742000 6949300 8169600 5999900 7345600 6952300 7490300 2 2 2 2 2 2 2 2 2 2 2 9298800000 4394600000 4904200000 9601 298 8927 51237;51238;51239;51240;51241;51242;51243;51244 61970;61971;61972;61973;61974;61975 61971 6 ITGEAFVQFASQELAEK Unmodified 1866.9363 0.9363437 1181 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 5.61 1.76 2 1 3 4 14 11 7 9 28 23 71.653 71.658 2;3 5.0369E-60 25697 20211116_3444_TMUAki_TMT10x_S_F5 279.77 241.37 284370000 453850000 1275800 422280000 285090000 405930000 314020000 239820000 242410000 253050000 294620000 264760000 423370000 17322000 432780000 274000000 410810000 314790000 252610000 251600000 246600000 282580000 42 42 21 42 41 42 42 42 42 42 41 191550000 299150000 299870 281130000 169550000 305210000 194450000 160140000 159880000 163970000 186220000 178340000 279070000 8785700 288430000 163080000 306180000 194860000 170260000 165090000 159980000 178810000 29 29 13 29 28 29 29 29 29 29 28 92815000 154700000 975930 141150000 115540000 100720000 119570000 79677000 82532000 89080000 108400000 86424000 144300000 8536100 144350000 110920000 104630000 119930000 82354000 86501000 86613000 103770000 13 13 8 13 13 13 13 13 13 13 13 55894000000 28009000000 27885000000 9602 1181 8928 51245;51246;51247;51248;51249;51250;51251;51252;51253;51254;51255;51256;51257;51258;51259;51260;51261;51262;51263;51264;51265;51266;51267;51268;51269;51270;51271;51272;51273;51274;51275;51276;51277;51278;51279;51280;51281;51282;51283;51284;51285;51286;51287;51288;51289;51290;51291;51292;51293;51294;51295 61976;61977;61978;61979;61980;61981;61982;61983;61984;61985;61986;61987;61988;61989;61990;61991;61992;61993;61994;61995;61996;61997;61998;61999;62000;62001;62002;62003;62004;62005;62006;62007;62008;62009;62010;62011;62012;62013;62014;62015;62016;62017;62018;62019;62020;62021;62022;62023;62024;62025;62026;62027;62028;62029;62030;62031;62032;62033;62034;62035;62036;62037 62019 62 ITGHFYACQVAQR Unmodified 1549.746 0.74598093 86 O00425;O00425-2 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 2.83 2.41 2 2 1 1 2 4 37.828 37.829 3 4.0373E-15 9190 20211116_3428_TMUAki_TMT10x_P_F1 173.76 155.13 2109600 3422700 24959 4327600 4662500 3461500 2343400 2837900 2840600 2319600 3153700 1964100 3197100 193360 4338000 4411200 3565700 2513700 2901300 2879200 2286800 3032600 6 6 4 6 6 6 6 6 6 6 6 1195400 1727800 3854.7 2404200 3734500 2666500 1492400 1439600 1598500 1188900 1716900 1112700 1614700 97790 2408900 3522000 2672700 1634300 1518100 1625800 1171500 1652500 2 2 1 2 2 2 2 2 2 2 2 914230 1694900 21104 1923400 928070 794920 851020 1398300 1242100 1130700 1436800 851400 1582400 95569 1929100 889210 892980 879360 1383200 1253400 1115300 1380000 4 4 3 4 4 4 4 4 4 4 4 661020000 481540000 179480000 9603 86 8929 51296;51297;51298;51299;51300;51301 62038;62039;62040;62041;62042;62043 62038 6 ITGQSLGYGFVNYIDPK Unmodified 1870.9465 0.94651445 815 P26378;P26378-4;P26378-2;P26378-5;P26378-1;P26378-3;Q12926;Q12926-2 ELAVL4;ELAVL2 ELAV-like protein 4;ELAV-like protein 2 yes no 0 0 0 0 By MS/MS 1 0 1 1 77.836 77.783 3 0.00019556 27329 20211116_3439_TMUAki_TMT10x_S_F1 74.732 57.852 4709300 7688000 76500 8172700 6144800 4714600 6008200 4382700 4284800 4387700 5167900 4385400 7175600 481830 8251600 5893100 5008800 6048100 4472900 4465800 4285100 4958000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4709300 7688000 76500 8172700 6144800 4714600 6008200 4382700 4284800 4387700 5167900 4385400 7175600 481830 8251600 5893100 5008800 6048100 4472900 4465800 4285100 4958000 1 1 1 1 1 1 1 1 1 1 1 537380000 0 537380000 9604 815 8930 51302 62044 62044 1 ITHCPTLLTR Unmodified 1210.6492 0.64922699 20 A6NHR9;A6NHR9-2 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 35.892 35.875 3 1.7894E-06 10267 20211116_3439_TMUAki_TMT10x_S_F1 141.1 118.31 547770 904170 2995.3 991100 1008000 920530 667940 791350 777400 682890 831760 510050 844010 54615 1003900 958130 939220 698690 807860 788010 671410 800680 2 2 1 2 2 2 2 2 2 2 2 273500 460100 2995.3 524860 725650 685750 392820 434490 424670 367960 439960 254680 429570 31799 533270 687600 683020 416840 452450 431180 362110 423940 1 1 1 1 1 1 1 1 1 1 1 274270 444070 0 466240 282340 234780 275120 356860 352730 314920 391790 255370 414450 22816 470610 270530 256200 281850 355420 356840 309300 376740 1 1 0 1 1 1 1 1 1 1 1 115410000 64415000 50991000 9605 20 8931 51303;51304 62045;62046 62046 2 ITHEVDELTQIIADVSQDPTLPR Unmodified 2589.3286 0.32861095 959 P36954 POLR2I DNA-directed RNA polymerase II subunit RPB9 yes yes 0 0 0 0 By MS/MS 2 0 2 2 83.252 83.253 3 5.5714E-06 29504 20211116_3429_TMUAki_TMT10x_P_F2 81.144 65.722 353310 551360 0 575770 475180 668370 510160 226520 242570 315380 387890 328950 514570 28226 587040 456320 665250 507370 255270 263640 304350 369680 1 1 0 1 1 1 1 1 1 1 1 353310 551360 0 575770 475180 668370 510160 226520 242570 315380 387890 328950 514570 28226 587040 456320 665250 507370 255270 263640 304350 369680 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28409000 28409000 0 9606 959 8932 51305;51306 62047;62048 62048 2 ITHQIVDRPGQQTSVIGR Unmodified 2004.0865 0.086470602 100 O00541;O00541-2 PES1 Pescadillo homolog yes no 0 0 0 1 By MS/MS By MS/MS 1 0 4 2 2 34.358 34.353 3;4 2.4847E-50 9658 20211116_3439_TMUAki_TMT10x_S_F1 226.44 187.45 3346300 5793400 309.74 6942500 4831000 5070000 3968100 3422900 4826100 3781200 4591600 3115700 5410100 285230 6973400 4609700 5243500 4096700 3574100 4863800 3678200 4436600 5 5 1 5 5 5 5 5 5 5 5 1974100 3424300 309.74 4050700 3829100 3936900 2743600 1932800 2720100 2152800 2445700 1838100 3197500 186010 4086400 3644000 3972600 2838900 2072800 2758500 2093500 2367800 2 2 1 2 2 2 2 2 2 2 2 1372200 2369100 0 2891900 1001900 1133200 1224600 1490200 2106000 1628400 2145900 1277600 2212600 99216 2887000 965680 1270900 1257800 1501200 2105300 1584700 2068800 3 3 0 3 3 3 3 3 3 3 3 565530000 342050000 223470000 9607 100 8933 51307;51308;51309;51310 62049;62050;62051;62052;62053 62053 5 ITIADCGQLE Unmodified 1118.5278 0.52777445 1385 P62937;P62937-2 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 61.232 61.002 2 3.9982E-06 20512 20211116_3430_TMUAki_TMT10x_P_F3 144.38 122.29 44323000 74268000 267620 77516000 59465000 78977000 51495000 57372000 53250000 52959000 60279000 41270000 69312000 3997200 78871000 56824000 79881000 52705000 59290000 54345000 51904000 57931000 11 11 7 11 11 11 11 11 11 11 11 22436000 35771000 81586 39082000 34545000 55898000 29506000 28777000 26255000 27191000 29813000 20890000 33391000 2008000 39888000 32996000 55298000 30092000 30580000 26979000 26621000 28650000 5 5 3 5 5 5 5 5 5 5 5 21887000 38496000 186030 38434000 24919000 23079000 21989000 28595000 26994000 25768000 30465000 20380000 35921000 1989200 38983000 23829000 24582000 22613000 28710000 27366000 25283000 29281000 6 6 4 6 6 6 6 6 6 6 6 5812600000 3142900000 2669800000 9608 1385 8934 51311;51312;51313;51314;51315;51316;51317;51318 62054;62055;62056;62057;62058;62059;62060;62061;62062;62063;62064;62065 62058 12 ITISPLQELTLYNPER Unmodified 1886.0149 0.014928368 86 O00425 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 6.29 1.03 2 2 2 1 3 4 78.745 78.758 2;3 1.0802E-59 27742 20211116_3446_TMUAki_TMT10x_S_F7 279.77 236.68 19845000 31490000 25424 30997000 24169000 24258000 25048000 16573000 17022000 19412000 23105000 18477000 29382000 1551500 31556000 23187000 24955000 25113000 17324000 17884000 18842000 22100000 4 4 1 4 4 4 4 4 4 4 4 5334600 7834800 0 8424000 4948000 8823200 5774400 4123500 4757200 5007500 6276400 4966800 7312900 409140 8558200 4763300 8858200 5782500 4456100 4938000 4854200 6007600 1 1 0 1 1 1 1 1 1 1 1 14511000 23655000 25424 22573000 19221000 15435000 19274000 12450000 12265000 14404000 16829000 13510000 22069000 1142300 22997000 18424000 16097000 19331000 12867000 12946000 13988000 16093000 3 3 1 3 3 3 3 3 3 3 3 6626700000 1983900000 4642800000 9609 86 8935 51319;51320;51321;51322;51323;51324;51325 62066;62067;62068;62069;62070 62069 5 ITISSLQDLTLYNPER Unmodified 1861.9785 0.97854286 3032 Q9NZI8;Q9NZI8-2 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.3 0.953 2 2 6 13 17 6 64.961 64.993 2;3 8.4939E-124 27592 20211116_3446_TMUAki_TMT10x_S_F7 379.39 331.49 78943000 129870000 486840 123950000 89652000 110890000 95993000 84075000 78272000 87127000 99554000 73501000 121160000 6351200 126680000 86099000 113170000 96490000 86926000 81159000 84967000 95377000 23 23 15 23 23 23 23 23 23 23 23 32387000 52325000 330180 49628000 31971000 59071000 39828000 35265000 32450000 35594000 40197000 30156000 48815000 2746300 50960000 30857000 59060000 39760000 37066000 33610000 34749000 38537000 16 16 13 16 16 16 16 16 16 16 16 46556000 77549000 156660 74327000 57681000 51815000 56165000 48810000 45822000 51533000 59357000 43345000 72349000 3604900 75717000 55243000 54107000 56730000 49860000 47549000 50218000 56841000 7 7 2 7 7 7 7 7 7 7 7 28166000000 12796000000 15370000000 9610 3032 8936 51326;51327;51328;51329;51330;51331;51332;51333;51334;51335;51336;51337;51338;51339;51340;51341;51342;51343;51344;51345;51346;51347;51348 62071;62072;62073;62074;62075;62076;62077;62078;62079;62080;62081;62082;62083;62084;62085;62086;62087;62088;62089;62090;62091;62092;62093;62094;62095;62096;62097 62093 27 ITITNDK Unmodified 803.43888 0.43888309 615;596;701 P0DMV8;P0DMV9;P0DMV8-2;P11142;P54652;P17066 HSPA1A;HSPA1B;HSPA8;HSPA2;HSPA6 Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 6 no no 0 0 0 0 By MS/MS By MS/MS 4.5 1.12 2 2 2 2 4 4 39.473 39.512 2 0.0023803 10380 20211116_3431_TMUAki_TMT10x_P_F4 126.57 33.744 29489000 42875000 108780 46307000 34294000 35299000 30749000 19207000 22930000 20151000 31305000 27456000 40020000 2464900 46834000 32790000 36277000 31133000 20369000 23967000 19641000 29940000 10 10 4 10 10 10 10 10 10 10 10 20426000 28271000 0 31317000 26027000 27829000 18990000 13362000 16014000 13735000 21064000 19017000 26392000 1637400 31681000 24771000 28240000 19538000 14327000 16601000 13399000 20163000 5 5 0 5 5 5 5 5 5 5 5 9062800 14603000 108780 14991000 8266700 7470300 11759000 5845600 6916600 6415400 10241000 8439000 13628000 827470 15153000 8020000 8037600 11595000 6042400 7366300 6242100 9776200 5 5 4 5 5 5 5 5 5 5 5 778700000 457030000 321670000 9611 596;615;701 8937 51349;51350;51351;51352;51353;51354;51355;51356 62098;62099;62100;62101;62102;62103;62104;62105;62106;62107 62099 10 ITITNDQNR Unmodified 1073.5465 0.54653606 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 By MS/MS 3 0 1 1 33.865 33.626 2 1.7537E-05 10467 20211116_3441_TMUAki_TMT10x_S_F3 148.62 106.99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9612 614 8938 51357 62108 62108 1 ITKFENAFLSHVVSQHQALLGTIR Unmodified 2708.4762 0.47621866 805 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 6.33 0.943 1 2 2 1 73.617 73.779 5 8.2338E-60 25085 20211116_3435_TMUAki_TMT10x_P_F7 222.72 205.5 6926300 11005000 124420 11548000 6925000 10415000 7415100 5446700 5011400 6151100 6987100 6450000 10271000 690170 11726000 6659800 10568000 7421400 5809600 5273500 5978400 6679000 3 3 3 3 3 3 3 3 3 3 3 5196100 7833100 109860 8132700 5205800 8473200 5393900 4160800 3783600 4469300 4902600 4838900 7310200 533310 8280600 5002900 8514000 5411500 4457200 3959300 4352200 4694800 2 2 2 2 2 2 2 2 2 2 2 1730200 3172200 14559 3415300 1719200 1941500 2021200 1285900 1227800 1681800 2084400 1611100 2960900 156860 3445000 1656900 2054000 2009900 1352400 1314200 1626200 1984200 1 1 1 1 1 1 1 1 1 1 1 6150500000 2432400000 3718100000 9613 805 8939 51358;51359;51360 62109;62110;62111 62110 3 ITKPGSIDSNNQLFAPGGR Unmodified 1971.0174 0.017387984 1511 Q04637;Q04637-3;Q04637-8;Q04637-5;Q04637-4;Q04637-9;Q04637-6;Q04637-7 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 1 By MS/MS By MS/MS 3.43 2.92 2 3 2 4 3 51.575 51.435 3;4 4.1611E-58 14848 20211116_3440_TMUAki_TMT10x_S_F2 245.1 214.56 19812000 35732000 202750 39169000 26359000 31870000 19364000 30041000 29705000 25412000 29992000 18448000 33355000 1861700 39607000 25106000 32876000 20327000 30497000 29778000 25009000 28924000 7 7 5 7 7 7 7 7 7 7 7 9443000 16344000 78209 17302000 19581000 25330000 14137000 14976000 14529000 12479000 13960000 8792700 15254000 962520 17703000 18641000 25077000 14637000 15674000 14744000 12290000 13484000 3 3 2 3 3 3 3 3 3 3 3 10369000 19388000 124540 21866000 6778000 6539900 5226200 15065000 15176000 12933000 16032000 9655700 18100000 899170 21903000 6465900 7799300 5690300 14823000 15034000 12719000 15439000 4 4 3 4 4 4 4 4 4 4 4 5075800000 3424700000 1651100000 9614 1511 8940 51361;51362;51363;51364;51365;51366;51367 62112;62113;62114;62115;62116;62117;62118 62116 7 ITLDNAYMEK Oxidation (M) 1212.5696 0.56963927 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 1 0 By MS/MS By MS/MS 4.2 0.748 2 4 4 6 4 50.546 50.674 2;3 0.00075457 14627 20211116_3431_TMUAki_TMT10x_P_F4 82.445 61.746 31190000 45888000 343100 65212000 76278000 51355000 35972000 38271000 45774000 30361000 47523000 29042000 42890000 3367200 64955000 72136000 52878000 38899000 39335000 46200000 29978000 45790000 10 10 4 10 10 10 10 10 10 10 10 17558000 25137000 134520 35357000 64121000 42127000 24670000 20724000 24961000 16131000 25524000 16349000 23493000 2136200 35449000 60492000 42017000 27095000 22013000 25401000 15943000 24604000 6 6 2 6 6 6 6 6 6 6 6 13632000 20751000 208580 29855000 12158000 9228800 11303000 17547000 20813000 14231000 22000000 12693000 19397000 1231000 29506000 11644000 10861000 11804000 17322000 20799000 14035000 21186000 4 4 2 4 4 4 4 4 4 4 4 3205000000 2072400000 1132500000 9615 670;671 8941 51368;51369;51370;51371;51372;51373;51374;51375;51376;51377 62119;62120;62121;62122;62123;62124;62125;62126;62127;62128;62129;62130 62121 738 12 ITLDNAYMEK Unmodified 1196.5747 0.57472465 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 By MS/MS By MS/MS 4.43 0.904 1 3 2 1 4 3 58.179 58.213 2;3 2.8712E-08 17723 20211116_3431_TMUAki_TMT10x_P_F4 165.11 118.22 32268000 44736000 130270 73727000 63145000 41789000 34604000 22266000 20561000 21979000 39145000 30044000 41852000 3018400 72688000 59823000 44103000 36158000 23615000 22191000 21478000 37187000 6 6 3 6 6 6 6 6 6 6 6 18782000 26242000 130270 41113000 54047000 35993000 26562000 13399000 12112000 13777000 22294000 17488000 24542000 2110500 40815000 51135000 36476000 27933000 14774000 13316000 13440000 21191000 4 4 3 4 4 4 4 4 4 4 4 13487000 18495000 0 32614000 9098500 5795300 8042000 8867600 8448600 8202000 16851000 12556000 17310000 907910 31873000 8687800 7627100 8225200 8841000 8875400 8037900 15996000 2 2 0 2 2 2 2 2 2 2 2 2911700000 1916000000 995620000 9616 670;671 8941 51378;51379;51380;51381;51382;51383;51384 62131;62132;62133;62134;62135;62136 62131 6 ITLETDEDMVTEIR Oxidation (M) 1679.7924 0.79238157 1798 Q15393 SF3B3 Splicing factor 3B subunit 3 yes yes 0 0 1 0 By MS/MS 1 0 1 1 56.864 56.864 3 8.6817E-05 16862 20211116_3428_TMUAki_TMT10x_P_F1 89.992 74.103 1774500 2621800 0 2941200 2894200 3841000 2183600 1923900 2237100 2217900 2560200 1652100 2447700 142450 2991400 2755900 3814400 2253700 2061700 2285000 2154000 2459800 1 1 0 1 1 1 1 1 1 1 1 1774500 2621800 0 2941200 2894200 3841000 2183600 1923900 2237100 2217900 2560200 1652100 2447700 142450 2991400 2755900 3814400 2253700 2061700 2285000 2154000 2459800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 324530000 324530000 0 9617 1798 8942 51385 62137 62137 2418 1 ITLNDLIPAFQNLLK Unmodified 1711.9873 0.98725705 870 P30154;P30154-2;P30154-4;P30154-5;P30154-3 PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform yes no 0 0 0 0 By matching By MS/MS 4.33 0.471 2 1 1 2 82.832 82.835 3 1.4661E-06 28236 20211116_3442_TMUAki_TMT10x_S_F4 103.21 80.68 1357100 2296900 16340 2470800 1704200 1572600 1667200 1376900 1251300 1512200 1773700 1263600 2143900 123860 2495000 1633500 1653100 1680200 1413900 1309700 1471300 1694900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1357100 2296900 16340 2470800 1704200 1572600 1667200 1376900 1251300 1512200 1773700 1263600 2143900 123860 2495000 1633500 1653100 1680200 1413900 1309700 1471300 1694900 2 2 1 2 2 2 2 2 2 2 2 152510000 34699000 117810000 9618 870 8943 51386;51387;51388 62138;62139 62138 2 ITLPVDFVTADKFDENAK Unmodified 2022.031 0.030972363 473 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 1 By MS/MS By MS/MS 6.22 1.9 2 1 3 4 6 6 15 17 38 16 60.423 60.448 2;3;4 1.3446E-50 24990 20211116_3445_TMUAki_TMT10x_S_F6 231.83 203.65 930940000 1502800000 8336200 1440500000 1016700000 1487500000 1082600000 1000000000 966530000 1052700000 1167000000 866830000 1402000000 82055000 1474700000 976720000 1501500000 1091100000 1042900000 995470000 1025900000 1119500000 81 81 46 81 81 81 81 81 81 81 81 553590000 869350000 4384300 834340000 561490000 1040600000 650460000 575190000 582850000 620630000 681860000 515460000 811060000 47337000 856720000 540710000 1036900000 653050000 609660000 599420000 604260000 654700000 59 59 33 59 59 59 59 59 59 59 59 377350000 633460000 3951900 606190000 455170000 446930000 432170000 424840000 383670000 432020000 485110000 351370000 590980000 34718000 617960000 436010000 464630000 438070000 433270000 396040000 421640000 464830000 22 22 13 22 22 22 22 22 22 22 22 162930000000 82089000000 80840000000 9619 473 8944 51389;51390;51391;51392;51393;51394;51395;51396;51397;51398;51399;51400;51401;51402;51403;51404;51405;51406;51407;51408;51409;51410;51411;51412;51413;51414;51415;51416;51417;51418;51419;51420;51421;51422;51423;51424;51425;51426;51427;51428;51429;51430;51431;51432;51433;51434;51435;51436;51437;51438;51439;51440;51441;51442 62140;62141;62142;62143;62144;62145;62146;62147;62148;62149;62150;62151;62152;62153;62154;62155;62156;62157;62158;62159;62160;62161;62162;62163;62164;62165;62166;62167;62168;62169;62170;62171;62172;62173;62174;62175;62176;62177;62178;62179;62180;62181;62182;62183;62184;62185;62186;62187;62188;62189;62190;62191;62192;62193;62194;62195;62196;62197;62198;62199;62200;62201;62202;62203;62204;62205;62206;62207;62208;62209;62210;62211;62212;62213;62214;62215;62216;62217;62218;62219;62220 62209 81 ITLTCGR Unmodified 819.42727 0.42727255 1072 P48444;P48444-2 ARCN1 Coatomer subunit delta yes no 0 0 0 0 By matching By MS/MS 7 0.816 1 1 1 2 1 34.725 35.052 2 0.013854 7456 20211116_3447_TMUAki_TMT10x_S_F8 94.539 63.535 286360 481460 0 446820 330960 263180 297160 314010 339720 301000 389770 266610 449120 20856 455530 316260 280580 304500 316310 345520 294510 374450 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 286360 481460 0 446820 330960 263180 297160 314010 339720 301000 389770 266610 449120 20856 455530 316260 280580 304500 316310 345520 294510 374450 1 1 0 1 1 1 1 1 1 1 1 11917000 4383400 7533700 9620 1072 8945 51443;51444;51445 62221 62221 1 ITLTSDPR Unmodified 901.4869 0.48689592 1324 P61960 UFM1 Ubiquitin-fold modifier 1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 36.65 36.782 2 0.018686 9483 20211116_3442_TMUAki_TMT10x_S_F4 73.637 21.949 234030 370940 0 413530 234760 204470 260430 228740 237670 213420 328350 217910 346290 19043 415730 225720 221740 262120 230890 246010 209070 313940 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 234030 370940 0 413530 234760 204470 260430 228740 237670 213420 328350 217910 346290 19043 415730 225720 221740 262120 230890 246010 209070 313940 1 1 0 1 1 1 1 1 1 1 1 11546000 0 11546000 9621 1324 8946 51446 62222 62222 1 ITNEKGECIVSDFTIGR Unmodified 1937.9517 0.95167618 1194 P52948;P52948-6;P52948-5;P52948-2;P52948-4;P52948-3 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 0 0 0 1 By MS/MS 5 0 1 1 61.222 61.39 3 0.028421 19286 20211116_3433_TMUAki_TMT10x_P_F5 46.027 28.538 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9622 1194 8947 51447 62223 62223 1 ITNNINVLIK Unmodified 1140.6867 0.68665836 2744 Q9BZZ5-2;Q9BZZ5;Q9BZZ5-3;Q9BZZ5-6;Q9BZZ5-5;Q9BZZ5-1 API5 Apoptosis inhibitor 5 yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 63.382 63.119 2 8.3804E-09 19388 20211116_3428_TMUAki_TMT10x_P_F1 142 93.355 9635700 15488000 110230 17574000 11005000 13411000 10104000 9323100 9712200 9787700 11706000 8972600 14460000 920780 17719000 10536000 13827000 10283000 9699300 9968400 9540100 11231000 2 2 2 2 2 2 2 2 2 2 2 4900400 7168000 729.86 8168900 7028300 8884200 5055100 4450400 4621800 4448900 5068200 4562700 6692200 436760 8273600 6689500 8906900 5217400 4748600 4736700 4345100 4875200 1 1 1 1 1 1 1 1 1 1 1 4735400 8320300 109500 9405000 3976900 4526600 5048400 4872700 5090400 5338800 6638100 4409900 7767800 484020 9445100 3846800 4920100 5066100 4950700 5231700 5195000 6355600 1 1 1 1 1 1 1 1 1 1 1 779270000 462190000 317080000 9623 2744 8948 51448;51449;51450 62224;62225;62226 62224 3 ITNSLTVLCSEK Unmodified 1363.7017 0.70171607 360 O75822;O75822-2;O75822-3 EIF3J Eukaryotic translation initiation factor 3 subunit J yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 60.332 60.947 2;3 2.3754E-15 19750 20211116_3435_TMUAki_TMT10x_P_F7 165.7 114.61 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9624 360 8949 51451;51452 62227;62228 62227 2 ITPAHDQNDYEVGQR Unmodified 1741.802 0.80197548 820 P26640 VARS Valine--tRNA ligase yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 32.616 32.382 3 4.9947E-45 9961 20211116_3441_TMUAki_TMT10x_S_F3 276.15 261.46 311560 551330 615.8 701190 946540 645790 454810 399820 512360 335610 558520 290060 515010 30178 703920 894930 655780 488820 417000 520360 330420 537350 2 2 1 2 2 2 2 2 2 2 2 209900 361240 0 448250 814820 553060 319860 279230 344280 245750 367330 195400 337400 20755 452710 768520 550800 351080 296720 349990 241390 353640 1 1 0 1 1 1 1 1 1 1 1 101660 190090 615.8 252940 131720 92733 134950 120580 168080 89861 191180 94661 177610 9423.3 251210 126420 104980 137740 120280 170370 89029 183710 1 1 1 1 1 1 1 1 1 1 1 152040000 62950000 89086000 9625 820 8950 51453;51454 62229;62230 62230 2 ITPEEAK Unmodified 786.41233 0.41233399 1362 P62701 RPS4X 40S ribosomal protein S4, X isoform yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 35.119 35.144 2 0.0056117 8415 20211116_3431_TMUAki_TMT10x_P_F4 107.59 23.979 1648400 2665700 3378.9 2278100 2260200 3041100 1914600 1269600 1668600 1348500 1963700 1534900 2486000 148380 2362800 2158700 3011200 1952500 1382600 1718700 1313700 1885200 1 1 1 1 1 1 1 1 1 1 1 1648400 2665700 3378.9 2278100 2260200 3041100 1914600 1269600 1668600 1348500 1963700 1534900 2486000 148380 2362800 2158700 3011200 1952500 1382600 1718700 1313700 1885200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 64986000 64986000 0 9626 1362 8951 51455;51456 62231;62232 62231 2 ITPENLPQILLQLK Unmodified 1618.9658 0.96579333 1026 P43243 MATR3 Matrin-3 yes yes 0 0 0 0 By MS/MS By MS/MS 3.3 1.95 2 4 11 1 2 11 9 81.751 81.729 2;3 1.1101E-71 28145 20211116_3429_TMUAki_TMT10x_P_F2 322.99 281.12 140760000 204780000 1449800 239910000 116880000 169430000 144230000 77511000 88316000 98609000 135440000 131060000 191210000 12082000 241210000 112810000 174890000 143140000 84079000 93965000 95437000 129200000 22 22 8 22 22 22 22 22 22 22 22 91814000 130230000 1250900 154560000 72539000 121690000 80418000 49156000 56890000 63075000 85364000 85494000 121610000 8192700 155460000 69808000 124370000 80431000 54056000 59916000 61028000 81466000 12 12 4 12 12 12 12 12 12 12 12 48943000 74548000 198900 85350000 44341000 47737000 63811000 28355000 31425000 35534000 50078000 45570000 69602000 3888900 85746000 42999000 50515000 62706000 30023000 34049000 34409000 47731000 10 10 4 10 10 10 10 10 10 10 10 38183000000 18532000000 19651000000 9627 1026 8952 51457;51458;51459;51460;51461;51462;51463;51464;51465;51466;51467;51468;51469;51470;51471;51472;51473;51474;51475;51476 62233;62234;62235;62236;62237;62238;62239;62240;62241;62242;62243;62244;62245;62246;62247;62248;62249;62250;62251;62252;62253;62254;62255;62256;62257;62258;62259;62260;62261;62262 62238 30 ITPENLPQILLQLKR Unmodified 1775.0669 0.066904359 1026 P43243 MATR3 Matrin-3 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.756 2 3 2 4 3 78.743 78.737 3 3.829E-32 26419 20211116_3433_TMUAki_TMT10x_P_F5 218.68 195.82 56891000 92688000 97938 96644000 56957000 68350000 67636000 40178000 39571000 46916000 58270000 52968000 86502000 4360000 97890000 54858000 70743000 67179000 42474000 42148000 45543000 55632000 6 6 2 6 6 6 6 6 6 6 6 26421000 40298000 12683 41182000 22851000 38854000 27137000 18268000 19243000 21532000 25303000 24599000 37606000 1933300 41915000 22005000 39263000 27057000 19710000 20136000 20895000 24221000 3 3 1 3 3 3 3 3 3 3 3 30470000 52390000 85255 55462000 34106000 29496000 40499000 21910000 20328000 25384000 32967000 28369000 48897000 2426700 55975000 32853000 31480000 40122000 22763000 22012000 24649000 31411000 3 3 1 3 3 3 3 3 3 3 3 8148800000 4057200000 4091700000 9628 1026 8953 51477;51478;51479;51480;51481;51482;51483 62263;62264;62265;62266;62267;62268;62269 62264 7 ITPFNLQEEMEEGHFDADGNYFLNR Oxidation (M) 3001.3189 0.3188509 430 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 yes yes 0 0 1 0 By MS/MS By MS/MS 3 0.816 2 2 2 1 5 74.002 73.834 3 5.2607E-38 23955 20211116_3440_TMUAki_TMT10x_S_F2 180.16 173.21 2852700 5248600 10238 4320300 3741600 4731800 3578300 3511200 3758400 3535400 3950700 2655900 4894000 221000 4479100 3581700 4767600 3643800 3632200 3822500 3451900 3805100 3 3 1 3 3 3 3 3 3 3 3 1033200 1790400 10238 1536400 913610 2091100 1181900 1169000 1202000 1223700 1337500 962120 1669700 93529 1593600 883380 2075300 1185400 1236800 1226700 1192800 1286000 1 1 1 1 1 1 1 1 1 1 1 1819500 3458200 0 2783900 2828000 2640700 2396500 2342100 2556500 2311800 2613200 1693800 3224300 127470 2885500 2698300 2692300 2458400 2395500 2595800 2259100 2519100 2 2 0 2 2 2 2 2 2 2 2 1359600000 503540000 856030000 9629 430 8954 51484;51485;51486;51487;51488;51489 62270;62271;62272;62273;62274;62275 62271 322 6 ITPLEIEVLEETVQTMDTS Oxidation (M) 2163.0504 0.050446755 2571 Q99436 PSMB7 Proteasome subunit beta type-7 yes yes 0 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 82.626 82.615 3 9.3729E-05 27336 20211116_3428_TMUAki_TMT10x_P_F1 72.634 62 3476500 5906900 86562 5569400 3972700 5121300 4142400 3715800 3686600 3954400 4442900 3237600 5510500 375850 5698800 3818700 5213300 4178800 3856000 3797300 3852300 4262500 3 3 3 3 3 3 3 3 3 3 3 1013400 1546800 39814 1473400 832130 1913100 1057800 1050500 1184100 1162400 1339900 943900 1443100 118590 1514800 805970 1902400 1065100 1115000 1204600 1130600 1287700 1 1 1 1 1 1 1 1 1 1 1 2463100 4360100 46749 4096000 3140600 3208200 3084500 2665200 2502600 2792100 3103100 2293700 4067400 257260 4184000 3012700 3310800 3113700 2741000 2592700 2721600 2974800 2 2 2 2 2 2 2 2 2 2 2 1366700000 905190000 461460000 9630 2571 8955 51490;51491 62276;62277;62278 62276 2799 3 ITPLEIEVLEETVQTMDTS Unmodified 2147.0555 0.055532133 2571 Q99436 PSMB7 Proteasome subunit beta type-7 yes yes 0 0 0 0 By MS/MS 1.5 0.5 1 1 2 85.221 85.221 2;3 0.00013809 28402 20211116_3428_TMUAki_TMT10x_P_F1 78.096 56.845 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9631 2571 8955 51492;51493 62279;62280 62279 2 ITPSYVAFTPEGER Unmodified 1565.7726 0.77257283 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 1.12 4 4 4 4 8 8 58.115 58.095 2;3 3.0335E-23 16716 20211116_3434_TMUAki_TMT10x_P_F6 188.06 149.66 71497000 118620000 1001100 124220000 94451000 114240000 82518000 94128000 89423000 86231000 97115000 66576000 110710000 6810400 126180000 90300000 116550000 84540000 96482000 90944000 84543000 93445000 21 21 13 21 21 21 21 21 21 21 21 38853000 62049000 581010 66084000 60396000 83489000 52686000 50616000 48447000 45122000 51774000 36178000 57914000 3771500 67392000 57733000 83241000 53713000 52958000 49590000 44295000 49841000 11 11 6 11 11 11 11 11 11 11 11 32645000 56570000 420040 58133000 34054000 30754000 29833000 43512000 40976000 41109000 45341000 30398000 52792000 3038900 58786000 32567000 33306000 30826000 43524000 41354000 40248000 43604000 10 10 7 10 10 10 10 10 10 10 10 22445000000 12849000000 9596000000 9632 614 8956 51494;51495;51496;51497;51498;51499;51500;51501;51502;51503;51504;51505;51506;51507;51508;51509 62281;62282;62283;62284;62285;62286;62287;62288;62289;62290;62291;62292;62293;62294;62295;62296;62297;62298;62299;62300;62301 62291 21 ITPSYVAFTPEGERLIGDAAK Unmodified 2234.1583 0.15829814 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 68.528 68.652 3 1.2564E-26 21510 20211116_3445_TMUAki_TMT10x_S_F6 174.2 149.04 5996700 10752000 44730 9141300 18712000 6056700 5709800 11652000 9491600 8709700 10165000 5583500 10027000 669420 9393300 17614000 6486200 6588700 11477000 9514500 8627500 9785300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5996700 10752000 44730 9141300 18712000 6056700 5709800 11652000 9491600 8709700 10165000 5583500 10027000 669420 9393300 17614000 6486200 6588700 11477000 9514500 8627500 9785300 2 2 1 2 2 2 2 2 2 2 2 798510000 0 798510000 9633 614 8957 51510;51511 62302;62303 62302 2 ITPVTVK Unmodified 756.47454 0.47454032 1740 Q14978;Q14978-2;Q14978-3 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 2 3 42.967 43.198 2 0.0036949 10799 20211116_3447_TMUAki_TMT10x_S_F8 117.16 41.849 15411000 26504000 62106 25380000 18040000 18467000 17539000 14351000 16218000 14694000 20299000 14349000 24727000 1299200 25868000 17284000 19147000 17776000 14809000 16702000 14337000 19455000 6 6 2 6 6 6 6 6 6 6 6 4325400 7273100 0 6651900 6715800 8685000 5519200 3963800 4351600 4008200 5439000 4027200 6784200 371140 6860300 6408000 8616200 5624800 4269700 4516700 3912800 5213100 1 1 0 1 1 1 1 1 1 1 1 11086000 19231000 62106 18728000 11324000 9782200 12020000 10387000 11867000 10686000 14860000 10322000 17943000 928100 19008000 10876000 10531000 12151000 10540000 12185000 10424000 14242000 5 5 2 5 5 5 5 5 5 5 5 534210000 201890000 332320000 9634 1740 8958 51512;51513;51514;51515;51516 62304;62305;62306;62307;62308;62309;62310 62309 7 ITQDIFQQLLK Unmodified 1345.7606 0.76055158 1254 P56192;P56192-2 MARS Methionine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS 5.67 3.3 1 2 3 79.53 79.535 2;3 4.2084E-05 26138 20211116_3428_TMUAki_TMT10x_P_F1 102.53 72.764 2738700 4508400 27024 4706000 3061600 5186600 3288400 2981800 2759600 3141400 3401100 2550200 4207500 256760 4794100 2943000 5204600 3307300 3147700 2853300 3061500 3261000 1 1 1 1 1 1 1 1 1 1 1 2738700 4508400 27024 4706000 3061600 5186600 3288400 2981800 2759600 3141400 3401100 2550200 4207500 256760 4794100 2943000 5204600 3307300 3147700 2853300 3061500 3261000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 544430000 544430000 0 9635 1254 8959 51517;51518;51519 62311;62312;62313 62311 3 ITQDIFQQLLKR Unmodified 1501.8617 0.86166261 1254 P56192;P56192-2 MARS Methionine--tRNA ligase, cytoplasmic yes no 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 76.547 76.48 3 2.1295E-22 25177 20211116_3431_TMUAki_TMT10x_P_F4 204.48 151.24 5722700 9659400 46253 8156900 10288000 7091600 7086600 9867000 8120500 9203300 8826200 5328700 9007600 581500 8411500 9787100 7352500 7387700 9872200 8241000 9015800 8492500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5722700 9659400 46253 8156900 10288000 7091600 7086600 9867000 8120500 9203300 8826200 5328700 9007600 581500 8411500 9787100 7352500 7387700 9872200 8241000 9015800 8492500 1 1 1 1 1 1 1 1 1 1 1 1593800000 0 1593800000 9636 1254 8960 51520;51521 62314;62315 62314 2 ITQLVSDQANHVLAR Unmodified 1663.9006 0.90056731 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4;Q7Z4S6-6 KIF21A Kinesin-like protein KIF21A yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 55.62 55.822 3 9.6196E-20 16497 20211116_3436_TMUAki_TMT10x_P_F8 172.82 159.72 10513000 20152000 94725 19183000 14813000 16190000 11544000 15694000 14687000 14032000 16377000 9788600 18801000 964770 19594000 14123000 16667000 11978000 15931000 14864000 13773000 15746000 3 3 2 3 3 3 3 3 3 3 3 3263500 6053500 89287 5884900 5559500 8241000 4421400 4857000 4154700 4405200 5001100 3039300 5648000 385940 6050700 5307500 8174000 4536100 5095500 4268400 4320900 4798100 1 1 1 1 1 1 1 1 1 1 1 7249100 14099000 5437.6 13298000 9253000 7949300 7122500 10837000 10532000 9626600 11376000 6749300 13153000 578830 13543000 8815400 8493100 7441600 10836000 10596000 9451700 10948000 2 2 1 2 2 2 2 2 2 2 2 2285900000 1026100000 1259800000 9637 2082 8961 51522;51523;51524;51525 62316;62317;62318;62319 62317 4 ITREEGVLTLWR Unmodified 1471.8147 0.81471242 1502 Q02978;Q02978-2 SLC25A11 Mitochondrial 2-oxoglutarate/malate carrier protein yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 58.347 58.425 3 1.4404E-07 17529 20211116_3436_TMUAki_TMT10x_P_F8 134.06 112.01 7102400 10564000 79725 11783000 7732900 9702100 7938200 6326900 5224200 6312700 8302500 6613600 9861700 671970 11904000 7424700 9936400 7957300 6602700 5542800 6165900 7913800 2 2 2 2 2 2 2 2 2 2 2 3583700 5224700 19111 5581900 4503100 6505900 4455300 3088000 2489400 3071000 3955400 3336900 4876500 327800 5683000 4317800 6494000 4460900 3311700 2670500 3000000 3770200 1 1 1 1 1 1 1 1 1 1 1 3518700 5339100 60614 6201400 3229800 3196100 3482800 3238900 2734900 3241700 4347100 3276700 4985200 344170 6220600 3106900 3442300 3496400 3291000 2872200 3165900 4143600 1 1 1 1 1 1 1 1 1 1 1 1548600000 884960000 663640000 9638 1502 8962 51526;51527 62320;62321 62320 2 ITSAPDMEDILTESEIKLDGVR Oxidation (M) 2447.2101 0.21013529 2587 Q99598 TSNAX Translin-associated protein X yes yes 0 0 1 1 By MS/MS By MS/MS 3 0.816 1 1 1 1 2 72.7 72.521 3 3.0137E-12 26382 20211116_3441_TMUAki_TMT10x_S_F3 115.88 106.6 3920300 6923800 41571 5697400 4351600 8776400 5155400 6393700 6803100 6961200 5758200 3650300 6456100 336860 5945000 4193100 8697400 5238300 6637900 6811800 6775200 5587100 3 3 1 3 3 3 3 3 3 3 3 2944700 4997300 41571 4282000 3006300 7456800 3849800 4739300 5079700 5191000 4215600 2741900 4660400 258140 4466300 2904700 7339600 3899000 4969300 5083200 5051200 4093400 2 2 1 2 2 2 2 2 2 2 2 975670 1926500 0 1415400 1345300 1319700 1305500 1654400 1723400 1770200 1542600 908390 1795700 78717 1478700 1288400 1357800 1339300 1668700 1728500 1724100 1493700 1 1 0 1 1 1 1 1 1 1 1 1295600000 838470000 457140000 9639 2587 8963 51528;51529;51530 62322;62323;62324;62325 62324 2818 4 ITSAYLQDIENAYKK Unmodified 1755.9043 0.90431529 420 O95299;O95299-2 NDUFA10 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial yes no 0 0 0 1 By MS/MS 7 0 1 1 69.718 69.995 3 0.0024481 24061 20211116_3446_TMUAki_TMT10x_S_F7 65.477 52.059 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9640 420 8964 51531 62326 62326 1 ITSDEPLTKDDIPVFLR Unmodified 1958.0361 0.03605774 3073 Q9UBB4;Q9UBB4-2 ATXN10 Ataxin-10 yes no 0 0 0 1 By MS/MS By MS/MS 5.5 1.12 2 2 2 2 4 4 73.035 73.07 3 1.9401E-15 24347 20211116_3442_TMUAki_TMT10x_S_F4 149.86 128.46 81944000 138900000 652380 133170000 95586000 105960000 95755000 70777000 60919000 71041000 97434000 76300000 129590000 7214500 135850000 91672000 108830000 96041000 73744000 64795000 69372000 92861000 12 12 7 12 12 12 12 12 12 12 12 32504000 54588000 230610 54765000 34008000 53784000 37764000 28743000 25087000 27322000 38291000 30264000 50937000 2693200 55842000 32702000 54290000 37716000 30445000 26545000 26743000 36529000 5 5 3 5 5 5 5 5 5 5 5 49441000 84312000 421770 78406000 61578000 52175000 57991000 42034000 35833000 43719000 59143000 46036000 78650000 4521300 80012000 58970000 54543000 58325000 43300000 38251000 42629000 56332000 7 7 4 7 7 7 7 7 7 7 7 7201000000 3581700000 3619300000 9641 3073 8965 51532;51533;51534;51535;51536;51537;51538;51539 62327;62328;62329;62330;62331;62332;62333;62334;62335;62336;62337;62338 62332 12 ITSEAEDLVANFFPK Unmodified 1679.8407 0.8406524 1307 P61289;P61289-2;P61289-3 PSME3 Proteasome activator complex subunit 3 yes no 0 0 0 0 By MS/MS By MS/MS 5.33 1.58 1 1 2 4 3 3 1 7 8 80.907 80.912 2;3 6.6755E-30 26075 20211116_3434_TMUAki_TMT10x_P_F6 199.8 179.34 30684000 49139000 137460 46007000 33256000 41471000 38167000 25063000 25619000 27873000 35283000 28568000 45840000 2344400 47088000 31996000 42159000 38069000 26395000 26955000 27106000 33737000 11 11 6 11 11 11 11 11 11 11 11 12945000 20453000 97653 19155000 11011000 21051000 14247000 11054000 11657000 12125000 15386000 12053000 19080000 1060500 19661000 10640000 21103000 14202000 11776000 12104000 11798000 14727000 5 5 3 5 5 5 5 5 5 5 5 17740000 28685000 39805 26852000 22246000 20420000 23919000 14009000 13963000 15748000 19897000 16515000 26760000 1283900 27427000 21356000 21055000 23867000 14619000 14851000 15309000 19010000 6 6 3 6 6 6 6 6 6 6 6 7626400000 2878300000 4748100000 9642 1307 8966 51540;51541;51542;51543;51544;51545;51546;51547;51548;51549;51550;51551;51552;51553;51554 62339;62340;62341;62342;62343;62344;62345;62346;62347;62348;62349;62350;62351;62352 62343 14 ITSEAEDLVANFFPKK Unmodified 1807.9356 0.93561541 1307 P61289;P61289-2;P61289-3 PSME3 Proteasome activator complex subunit 3 yes no 0 0 0 1 By matching By MS/MS 8 0 2 1 1 79.065 79.053 4 1.6405E-10 25425 20211116_3447_TMUAki_TMT10x_S_F8 123.38 99.822 2213300 3690300 32795 3627400 2836300 2364800 2647000 1998800 2205400 2213200 2444000 2061000 3443200 222780 3686100 2716800 2478800 2681200 2057100 2271400 2152700 2350300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2213300 3690300 32795 3627400 2836300 2364800 2647000 1998800 2205400 2213200 2444000 2061000 3443200 222780 3686100 2716800 2478800 2681200 2057100 2271400 2152700 2350300 1 1 1 1 1 1 1 1 1 1 1 1040600000 345590000 694960000 9643 1307 8967 51555;51556 62353 62353 1 ITSEALLVTQQLVK Unmodified 1541.9029 0.90285872 2116 Q86VP6;Q86VP6-3 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.82 2.98 3 3 5 6 5 70.957 70.952 2;3 1.6098E-71 25606 20211116_3436_TMUAki_TMT10x_P_F8 317.44 255.66 38883000 65154000 437550 59315000 50375000 59912000 47161000 43135000 38764000 44616000 48058000 36206000 60773000 3736800 60932000 48244000 60621000 47746000 44748000 40133000 43513000 46072000 7 7 5 7 7 7 7 7 7 7 7 18686000 31017000 390390 28947000 21948000 38438000 24583000 20526000 18778000 20991000 22521000 17401000 28934000 1958700 29819000 21135000 38170000 24618000 21787000 19490000 20482000 21610000 3 3 3 3 3 3 3 3 3 3 3 20197000 34137000 47160 30368000 28427000 21474000 22579000 22609000 19986000 23624000 25536000 18805000 31839000 1778100 31114000 27109000 22450000 23128000 22961000 20643000 23031000 24462000 4 4 2 4 4 4 4 4 4 4 4 12493000000 7627500000 4865500000 9644 2116 8968 51557;51558;51559;51560;51561;51562;51563;51564;51565;51566;51567 62354;62355;62356;62357;62358;62359;62360;62361;62362;62363;62364 62357 11 ITSEIPQTER Unmodified 1172.6037 0.60371659 1445 P82979 SARNP SAP domain-containing ribonucleoprotein yes yes 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 37.241 37.373 2 0.0026743 12623 20211116_3441_TMUAki_TMT10x_S_F3 78.759 55.202 156730 284570 2346.8 269280 158230 138800 164890 150600 179440 140120 230690 145950 265480 15202 273840 152030 149710 167350 152210 183730 137280 220960 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 156730 284570 2346.8 269280 158230 138800 164890 150600 179440 140120 230690 145950 265480 15202 273840 152030 149710 167350 152210 183730 137280 220960 1 1 1 1 1 1 1 1 1 1 1 8440700 0 8440700 9645 1445 8969 51568;51569 62365;62366 62365 2 ITSENPDEGFKPSSGTVQELNFR Unmodified 2551.2191 0.2190605 1591 Q13085;Q13085-4;Q13085-3;Q13085-2;O00763;O00763-3;O00763-2 ACACA;ACACB Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase yes no 0 0 0 1 By MS/MS 5 0 1 1 58.285 58.42 3 1.1088E-07 16940 20211116_3444_TMUAki_TMT10x_S_F5 96.264 76.367 3455600 5450600 0 6245400 3062400 2421300 2212300 3942300 3655400 3553300 4235100 3217500 5089000 278440 6258000 2914800 2736800 2333100 3919900 3676100 3486400 4067500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3455600 5450600 0 6245400 3062400 2421300 2212300 3942300 3655400 3553300 4235100 3217500 5089000 278440 6258000 2914800 2736800 2333100 3919900 3676100 3486400 4067500 1 1 0 1 1 1 1 1 1 1 1 314030000 0 314030000 9646 1591 8970 51570 62367 62367 1 ITSFPESEGYSYETSTK Unmodified 1924.8578 0.8578186 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.12 0.781 2 3 3 5 3 58.437 58.389 2;3 1.1371E-46 17853 20211116_3431_TMUAki_TMT10x_P_F4 222.48 213.3 160830000 264830000 7109000 337420000 262470000 259570000 222260000 100510000 77596000 104190000 182310000 149800000 247390000 21383000 337930000 251080000 265660000 223070000 110330000 88987000 101600000 172620000 8 8 8 8 8 8 8 8 8 8 8 116580000 189980000 5133000 241100000 230230000 229000000 196340000 70909000 55018000 71254000 128820000 108580000 177460000 16041000 242170000 220220000 230490000 196550000 80084000 64774000 69576000 121980000 5 5 5 5 5 5 5 5 5 5 5 44256000 74852000 1976000 96320000 32234000 30568000 25921000 29606000 22578000 32934000 53488000 41221000 69926000 5342300 95763000 30869000 35175000 26519000 30250000 24212000 32028000 50641000 3 3 3 3 3 3 3 3 3 3 3 5286500000 3178400000 2108000000 9647 1057 8971 51571;51572;51573;51574;51575;51576;51577;51578 62368;62369;62370;62371;62372;62373;62374;62375;62376;62377 62371 10 ITSGPFEPDLYK Unmodified 1365.6816 0.68163256 3217 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 0 0 By MS/MS By MS/MS 5.88 0.599 2 5 1 5 3 65.587 65.599 2;3 2.9406E-30 20213 20211116_3445_TMUAki_TMT10x_S_F6 259.08 207.09 39891000 60808000 93612 80787000 42105000 48537000 38252000 30864000 34318000 34833000 46074000 37141000 56815000 3127200 80523000 40261000 51039000 38880000 32392000 35502000 33857000 44082000 7 7 3 7 7 7 7 7 7 7 7 20006000 29718000 27119 39801000 25109000 34764000 22278000 14898000 17285000 17717000 23010000 18627000 27767000 1661600 39816000 24000000 35280000 22591000 16234000 18006000 17187000 22020000 3 3 1 3 3 3 3 3 3 3 3 19885000 31091000 66493 40986000 16996000 13773000 15974000 15966000 17032000 17117000 23064000 18514000 29048000 1465600 40707000 16261000 15759000 16289000 16157000 17495000 16670000 22062000 4 4 2 4 4 4 4 4 4 4 4 4249300000 1959500000 2289900000 9648 3217 8972 51579;51580;51581;51582;51583;51584;51585;51586 62378;62379;62380;62381;62382;62383;62384;62385;62386 62385 9 ITSGPFEPDLYKSEMEVQDAELK Oxidation (M) 2641.2469 0.24691473 3217 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 1 1 By MS/MS By MS/MS 3.25 1.23 1 7 6 6 3 1 14 10 72.988 72.872 3;4 1.8888E-21 26360 20211116_3441_TMUAki_TMT10x_S_F3 158.44 148.04 164140000 283950000 2313800 234630000 202450000 309310000 211280000 241730000 242430000 247230000 236090000 152840000 264770000 14800000 243960000 194410000 308980000 214810000 249350000 245050000 241230000 227940000 40 40 25 40 40 40 40 40 40 40 40 89490000 149810000 1415000 124560000 93602000 208040000 115880000 132530000 132200000 135810000 128550000 83331000 139690000 7865900 130100000 90362000 205090000 116880000 138660000 133650000 132500000 124120000 21 21 14 21 21 21 21 21 21 21 21 74651000 134130000 898770 110070000 108850000 101270000 95399000 109200000 110230000 111430000 107540000 69509000 125070000 6934000 113860000 104050000 103890000 97929000 110690000 111400000 108730000 103820000 19 19 11 19 19 19 19 19 19 19 19 37923000000 23208000000 14715000000 9649 3217 8973 51587;51588;51589;51590;51591;51592;51593;51594;51595;51596;51597;51598;51599;51600;51601;51602;51603;51604;51605;51606;51607;51608;51609;51610 62387;62388;62389;62390;62391;62392;62393;62394;62395;62396;62397;62398;62399;62400;62401;62402;62403;62404;62405;62406;62407;62408;62409;62410;62411;62412;62413;62414;62415;62416;62417;62418;62419;62420;62421;62422;62423;62424;62425;62426 62417 3203 40 ITSGPFEPDLYKSEMEVQDAELK Unmodified 2625.252 0.25200011 3217 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 0 1 By MS/MS By MS/MS 4.19 1.47 3 5 4 4 4 1 10 11 75.991 75.954 3;4 3.4364E-84 24095 20211116_3444_TMUAki_TMT10x_S_F5 278.45 250.04 227050000 379650000 3922100 354460000 276170000 278760000 292040000 133630000 113460000 159910000 244470000 211430000 354160000 22120000 362250000 265420000 285390000 289870000 143980000 127890000 155090000 231780000 40 40 33 40 40 40 40 40 40 40 40 107320000 177010000 1897300 167140000 109200000 167690000 143030000 64828000 54038000 74756000 112140000 99941000 165130000 9810400 171210000 105660000 168490000 140560000 71401000 60930000 72601000 106380000 16 16 13 16 16 16 16 16 16 16 16 119720000 202630000 2024700 187320000 166970000 111060000 149010000 68802000 59424000 85153000 132330000 111490000 189020000 12309000 191040000 159760000 116900000 149310000 72575000 66961000 82491000 125400000 24 24 20 24 24 24 24 24 24 24 24 21548000000 11790000000 9758100000 9650 3217 8973 51611;51612;51613;51614;51615;51616;51617;51618;51619;51620;51621;51622;51623;51624;51625;51626;51627;51628;51629;51630;51631 62427;62428;62429;62430;62431;62432;62433;62434;62435;62436;62437;62438;62439;62440;62441;62442;62443;62444;62445;62446;62447;62448;62449;62450;62451;62452;62453;62454;62455;62456;62457;62458;62459;62460;62461;62462;62463;62464;62465;62466;62467 62461 41 ITSYFLNEGSQARPR Unmodified 1737.8798 0.87983187 358 O75792 RNASEH2A Ribonuclease H2 subunit A yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 51.466 51.272 3 9.6855E-38 16137 20211116_3429_TMUAki_TMT10x_P_F2 244.67 210.39 7928300 12587000 75545 13577000 11049000 13234000 8801300 11941000 11689000 10680000 10938000 7382200 11748000 717300 13776000 10539000 13474000 9134500 12168000 11738000 10482000 10575000 4 4 2 4 4 4 4 4 4 4 4 4414400 6855100 65415 7224100 7732100 10124000 5970700 6887600 6778200 6019500 6076700 4110500 6397900 451940 7387100 7372200 10062000 6173400 7140200 6835400 5914700 5883700 2 2 1 2 2 2 2 2 2 2 2 3513900 5731700 10130 6353100 3317300 3110000 2830600 5053100 4910400 4660200 4861300 3271600 5350600 265360 6388800 3167000 3412000 2961100 5027800 4902700 4567600 4691000 2 2 1 2 2 2 2 2 2 2 2 1000800000 582040000 418710000 9651 358 8974 51632;51633;51634;51635 62468;62469;62470;62471 62469 4 ITVDPTTDGPTK Unmodified 1243.6296 0.62959699 2599 Q99715;Q99715-4 COL12A1 Collagen alpha-1(XII) chain yes no 0 0 0 0 By MS/MS 8 0 1 1 74.124 74.145 2 0.0068229 24049 20211116_3436_TMUAki_TMT10x_P_F8 64.04 25.954 6348100 10432000 221220 9635200 6663600 12257000 8191600 7235500 6502600 7318500 8396800 5912300 9731200 736880 9925000 6441200 12212000 8176900 7612500 6756400 7144200 8041400 2 2 2 2 2 2 2 2 2 2 2 6348100 10432000 221220 9635200 6663600 12257000 8191600 7235500 6502600 7318500 8396800 5912300 9731200 736880 9925000 6441200 12212000 8176900 7612500 6756400 7144200 8041400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 623510000 623510000 0 9652 2599 8975 51636 62472;62473 62473 2 ITVLEALR Unmodified 913.55967 0.55966693 2973;1941 Q9NVI7;Q9NVI7-2;Q9NVI7-3;Q5T9A4;Q5T9A4-3 ATAD3A;ATAD3B ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B no no 0 0 0 0 By MS/MS 7 0 1 1 62.734 63.405 2 0.0066279 20791 20211116_3435_TMUAki_TMT10x_P_F7 91.783 31.074 4349300 7193100 20167 6670200 6838600 10753000 5762100 6187300 6037600 6037900 6026400 4049800 6710000 414250 6902700 6531300 10600000 5909600 6516800 6129800 5903100 5813800 1 1 1 1 1 1 1 1 1 1 1 4349300 7193100 20167 6670200 6838600 10753000 5762100 6187300 6037600 6037900 6026400 4049800 6710000 414250 6902700 6531300 10600000 5909600 6516800 6129800 5903100 5813800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 372980000 372980000 0 9653 2973;1941 8976 51637 62474 62474 1 ITVNEVELLVMK Oxidation (M) 1402.7742 0.77415274 3195 Q9UNM6;Q9UNM6-2 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 0 0 1 0 By MS/MS By MS/MS 5.6 1.02 1 1 2 1 2 3 78.192 78.202 2 0.00019977 25096 20211116_3444_TMUAki_TMT10x_S_F5 97.915 60.803 5406100 9141700 64008 7989400 6870600 9346500 7218400 7814200 7437800 7713100 8202800 5034100 8525900 521410 8252200 6600000 9403500 7310500 8019300 7584300 7537200 7889300 2 2 1 2 2 2 2 2 2 2 2 2829100 4492700 64008 4144000 2825400 5332800 3571400 3743700 3316800 3672800 4323700 2634700 4190900 294150 4270000 2731700 5323700 3575700 3884400 3421200 3590000 4139700 1 1 1 1 1 1 1 1 1 1 1 2577000 4649000 0 3845400 4045200 4013700 3647000 4070500 4121000 4040300 3879200 2399400 4335000 227260 3982200 3868300 4079800 3734800 4134900 4163100 3947200 3749600 1 1 0 1 1 1 1 1 1 1 1 2492400000 894460000 1598000000 9654 3195 8977 51638;51639;51640;51641;51642 62475;62476 62476 3184 2 ITVPFLEQCPIR Unmodified 1471.7857 0.78572048 1070 P48147 PREP Prolyl endopeptidase yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 2 1 1 2 74.277 74.202 2 6.5891E-09 23418 20211116_3447_TMUAki_TMT10x_S_F8 152.04 126.23 15690000 25605000 44279 23922000 18548000 20707000 18187000 15866000 15035000 16427000 19349000 14607000 23886000 1168300 24476000 17764000 21185000 18369000 16392000 15586000 16020000 18532000 5 5 1 5 5 5 5 5 5 5 5 6086600 9655000 0 8880900 5672300 10559000 6604200 5875600 5830300 6526500 7246600 5666100 9006200 348940 9139700 5452600 10548000 6626300 6229700 6015500 6347300 6946700 2 2 0 2 2 2 2 2 2 2 2 9602900 15950000 44279 15042000 12875000 10148000 11582000 9990200 9204400 9900300 12102000 8941100 14879000 819380 15336000 12312000 10637000 11742000 10163000 9570800 9672800 11585000 3 3 1 3 3 3 3 3 3 3 3 995590000 265940000 729650000 9655 1070 8978 51643;51644;51645 62477;62478;62479;62480;62481 62480 5 ITVPGNFQGHSGAQCITCSYK Unmodified 2324.0678 0.067785349 1550 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 2 4 3 3 51.799 51.572 3;4 2.9925E-55 14927 20211116_3440_TMUAki_TMT10x_S_F2 220.63 209.19 20292000 35087000 288660 42250000 27070000 37498000 21811000 25482000 20449000 26104000 26164000 18896000 32767000 2035800 42525000 25840000 38223000 22357000 26534000 21066000 25469000 25062000 5 5 4 5 5 5 5 5 5 5 5 11492000 19110000 169890 22763000 20228000 30579000 16347000 13751000 11058000 15154000 14089000 10701000 17845000 1233400 23081000 19308000 30292000 16620000 14873000 11589000 14743000 13497000 2 2 2 2 2 2 2 2 2 2 2 8799900 15977000 118770 19487000 6842200 6918400 5464500 11731000 9391500 10949000 12075000 8194300 14921000 802380 19444000 6532500 7931400 5736500 11661000 9477600 10726000 11565000 3 3 2 3 3 3 3 3 3 3 3 3686400000 2104100000 1582300000 9656 1550 8979 51646;51647;51648;51649;51650;51651 62482;62483;62484;62485;62486;62487 62486 6 ITVTSEVPFSK Unmodified 1206.6496 0.64960415 931 P35268 RPL22 60S ribosomal protein L22 yes yes 0 0 0 0 By MS/MS By MS/MS 6.89 0.737 3 4 2 6 3 43.884 44.306 2;3 1.1599E-11 17587 20211116_3434_TMUAki_TMT10x_P_F6 140.49 98.484 28033000 47039000 298860 53091000 36918000 51406000 33431000 37312000 39009000 34305000 38271000 26103000 43915000 2691200 53709000 35327000 52156000 34266000 38558000 39415000 33628000 36941000 5 5 2 5 5 5 5 5 5 5 5 18227000 30938000 298860 32362000 29548000 43241000 25158000 25086000 25658000 22966000 24607000 16973000 28874000 1945100 33077000 28240000 42972000 25764000 26359000 26043000 22517000 23770000 3 3 2 3 3 3 3 3 3 3 3 9805700 16101000 0 20729000 7369800 8165000 8273500 12226000 13352000 11339000 13664000 9129800 15041000 746180 20632000 7087300 9184200 8502200 12199000 13372000 11110000 13171000 2 2 0 2 2 2 2 2 2 2 2 2112400000 1250200000 862140000 9657 931 8980 51652;51653;51654;51655;51656;51657;51658;51659;51660 62488;62489;62490;62491;62492;62493;62494;62495 62488 8 ITVTSEVPFSKR Unmodified 1362.7507 0.75071518 931 P35268 RPL22 60S ribosomal protein L22 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.04 2 2 2 2 4 4 49.056 49.115 3 8.0306E-20 13739 20211116_3436_TMUAki_TMT10x_P_F8 230.81 206.85 33837000 50793000 205470 62260000 46123000 43980000 30950000 41632000 47997000 36503000 44840000 31507000 47438000 3137200 62432000 43854000 45879000 32715000 42293000 47971000 35862000 43353000 8 8 6 8 8 8 8 8 8 8 8 15566000 22794000 168280 27444000 34301000 31997000 19122000 19219000 21735000 17008000 19977000 14494000 21286000 1702900 27737000 32518000 32029000 20271000 20119000 21935000 16702000 19325000 5 5 4 5 5 5 5 5 5 5 5 18271000 27999000 37197 34816000 11822000 11983000 11828000 22413000 26262000 19495000 24863000 17012000 26152000 1434300 34695000 11336000 13850000 12444000 22174000 26036000 19160000 24028000 3 3 2 3 3 3 3 3 3 3 3 6486200000 4291400000 2194900000 9658 931 8981 51661;51662;51663;51664;51665;51666;51667;51668 62496;62497;62498;62499;62500;62501;62502;62503 62500 8 ITVVGVGAVGMACAISILMK Unmodified 1989.0825 0.082496122 462 P00338;P00338-3;P00338-4;P00338-2;P00338-5 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 0 By MS/MS By MS/MS 4 0.964 2 7 8 11 17 11 84.259 84.251 2;3;4 0.016923 28575 20211116_3441_TMUAki_TMT10x_S_F3 51.013 38.437 2307600 4470700 127020 3650700 2994000 3645400 3955900 3509300 3663000 3899200 3516100 2149600 4168600 315660 3782200 2902600 3710900 3953300 3586600 3734000 3792100 3396400 3 3 1 3 3 3 3 3 3 3 3 70214 126280 0 114830 72453 167440 90748 86592 94474 95381 107470 65364 117790 2207.9 118740 69826 165520 91208 92384 96409 92792 103270 2 2 0 2 2 2 2 2 2 2 2 2237400 4344400 127020 3535900 2921600 3477900 3865200 3422700 3568500 3803800 3408600 2084200 4050800 313450 3663400 2832700 3545400 3862100 3494200 3637600 3699300 3293100 1 1 1 1 1 1 1 1 1 1 1 493590000 2235000 491350000 9659 462 8982 51669;51670;51671;51672;51673;51674;51675;51676;51677;51678;51679;51680;51681;51682;51683;51684;51685;51686;51687;51688;51689;51690;51691;51692;51693;51694;51695;51696 62504;62505;62506;62507;62508;62509;62510;62511;62512;62513;62514;62515;62516;62517;62518;62519;62520;62521;62522;62523;62524;62525;62526;62527;62528;62529;62530;62531;62532 62523 29 ITVVGVGQVGMACAISILGK Oxidation (M) 1988.0799 0.079853586 531 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 1 0 By MS/MS By MS/MS 4.28 0.885 9 42 16 3 1 1 29 43 90.214 90.189 2;3;4 5.3674E-18 26402 20211116_3442_TMUAki_TMT10x_S_F4 154.23 112.83 63796000 105920000 404440 86843000 75771000 109280000 83241000 80661000 82945000 85861000 85281000 59401000 98764000 5438700 90277000 72841000 109300000 84035000 83611000 84479000 83642000 82195000 69 69 28 69 69 69 69 69 69 69 69 31778000 49921000 213780 42354000 31148000 64627000 37247000 38887000 39822000 41199000 40673000 29588000 46554000 2554700 44075000 30016000 63885000 37542000 40906000 40429000 40142000 39210000 37 37 18 37 37 37 37 37 37 37 37 32018000 55999000 190660 44490000 44622000 44654000 45994000 41775000 43124000 44662000 44607000 29813000 52210000 2884000 46202000 42825000 45416000 46493000 42705000 44049000 43501000 42985000 32 32 10 32 32 32 32 32 32 32 32 28450000000 14677000000 13772000000 9660 531 8983 51697;51698;51699;51700;51701;51702;51703;51704;51705;51706;51707;51708;51709;51710;51711;51712;51713;51714;51715;51716;51717;51718;51719;51720;51721;51722;51723;51724;51725;51726;51727;51728;51729;51730;51731;51732;51733;51734;51735;51736;51737;51738;51739;51740;51741;51742;51743;51744;51745;51746;51747;51748;51749;51750;51751;51752;51753;51754;51755;51756;51757;51758;51759;51760;51761;51762;51763;51764;51765;51766;51767;51768 62533;62534;62535;62536;62537;62538;62539;62540;62541;62542;62543;62544;62545;62546;62547;62548;62549;62550;62551;62552;62553;62554;62555;62556;62557;62558;62559;62560;62561;62562;62563;62564;62565;62566;62567;62568;62569;62570;62571;62572;62573;62574;62575;62576;62577;62578;62579;62580;62581;62582;62583;62584;62585;62586;62587;62588;62589;62590;62591;62592;62593;62594;62595;62596;62597;62598;62599;62600;62601;62602;62603;62604;62605;62606;62607;62608;62609;62610;62611;62612;62613;62614;62615;62616 62581 453 84 ITVVGVGQVGMACAISILGK Unmodified 1972.0849 0.084938963 531 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 0 By MS/MS By MS/MS 5.52 0.963 10 16 21 9 26 30 90.537 90.528 3 1.8663E-18 28070 20211116_3445_TMUAki_TMT10x_S_F6 152.04 135.16 53338000 85934000 657400 85417000 57999000 57462000 64282000 28086000 26005000 35071000 54241000 49664000 80184000 4673700 86758000 55783000 59603000 63691000 30248000 29133000 33964000 51450000 54 54 32 54 54 54 54 54 54 54 54 23631000 35430000 338780 36430000 21887000 32368000 25451000 14021000 12394000 16540000 22773000 22004000 33064000 2017800 37033000 21082000 32813000 25225000 15257000 13548000 16050000 21647000 24 24 15 24 24 24 24 24 24 24 24 29707000 50504000 318620 48987000 36111000 25094000 38832000 14065000 13612000 18530000 31467000 27661000 47120000 2655800 49725000 34701000 26790000 38466000 14990000 15585000 17914000 29802000 30 30 17 30 30 30 30 30 30 30 30 7853400000 3214100000 4639300000 9661 531 8983 51769;51770;51771;51772;51773;51774;51775;51776;51777;51778;51779;51780;51781;51782;51783;51784;51785;51786;51787;51788;51789;51790;51791;51792;51793;51794;51795;51796;51797;51798;51799;51800;51801;51802;51803;51804;51805;51806;51807;51808;51809;51810;51811;51812;51813;51814;51815;51816;51817;51818;51819;51820;51821;51822;51823;51824 62617;62618;62619;62620;62621;62622;62623;62624;62625;62626;62627;62628;62629;62630;62631;62632;62633;62634;62635;62636;62637;62638;62639;62640;62641;62642;62643;62644;62645;62646;62647;62648;62649;62650;62651;62652;62653;62654;62655;62656;62657;62658;62659;62660;62661;62662;62663;62664;62665;62666;62667;62668;62669;62670;62671;62672;62673;62674;62675;62676;62677;62678;62679;62680;62681;62682;62683;62684;62685;62686 62663 70 ITVYEALNHPWLK Unmodified 1582.8508 0.85076357 143 O14936;O14936-3;O14936-4;O14936-6;O14936-2 CASK Peripheral plasma membrane protein CASK yes no 0 0 0 0 By matching By MS/MS 2 0 2 1 1 71.763 71.566 3 0.0046288 23102 20211116_3440_TMUAki_TMT10x_S_F2 61.212 42.137 4844400 8497900 110700 8012300 6331000 5537800 5709800 5873800 4416800 5286100 6584100 4511500 7927700 525620 8171200 6061500 5801700 5784100 5937500 4626800 5186900 6284400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4844400 8497900 110700 8012300 6331000 5537800 5709800 5873800 4416800 5286100 6584100 4511500 7927700 525620 8171200 6061500 5801700 5784100 5937500 4626800 5186900 6284400 2 2 2 2 2 2 2 2 2 2 2 603840000 403300000 200540000 9662 143 8984 51825;51826 62687;62688 62687 2 IVADFSASVK Unmodified 1035.5601 0.56006086 1128 P49915;P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 0 0 By MS/MS 7 0 2 2 86.773 86.796 2 0.0016989 31004 20211116_3446_TMUAki_TMT10x_S_F7 85.764 53.544 693870 1237800 11837 1169100 946760 886310 740020 1033600 932710 1040600 1026600 646150 1154700 72100 1193300 903320 923670 767410 1043600 943770 1016000 987420 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 693870 1237800 11837 1169100 946760 886310 740020 1033600 932710 1040600 1026600 646150 1154700 72100 1193300 903320 923670 767410 1043600 943770 1016000 987420 1 1 1 1 1 1 1 1 1 1 1 11298000 0 11298000 9663 1128 8985 51827;51828 62689;62690 62689 2 IVADKDYSVTANSK Unmodified 1509.7675 0.76748745 531 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 43.395 43.706 3 2.0473E-23 11203 20211116_3445_TMUAki_TMT10x_S_F6 184.99 154.86 9354300 20215000 78598 9115600 27501000 32026000 19212000 24960000 26977000 22449000 21900000 8710200 18822000 1089400 10426000 26164000 31054000 20162000 25659000 26925000 22028000 21283000 6 6 5 6 6 6 6 6 6 6 6 5528400 11471000 58843 4912400 18959000 23606000 12888000 14485000 15720000 13483000 12747000 5147900 10679000 701290 5754300 18030000 22690000 13478000 15158000 15763000 13210000 12389000 2 2 2 2 2 2 2 2 2 2 2 3825900 8744100 19755 4203200 8541400 8419900 6324000 10475000 11257000 8965800 9152300 3562300 8142200 388120 4671700 8134500 8363700 6683400 10501000 11162000 8818700 8894100 4 4 3 4 4 4 4 4 4 4 4 1400100000 938580000 461500000 9664 531 8986 51829;51830;51831;51832 62691;62692;62693;62694;62695;62696 62693 6 IVAEEFLK Unmodified 947.53278 0.53278348 1269 P59998;P59998-3;P59998-4 ARPC4 Actin-related protein 2/3 complex subunit 4 yes no 0 0 0 0 By MS/MS By MS/MS 4.14 0.833 2 2 3 4 3 65.244 65.125 2 0.0011038 20543 20211116_3431_TMUAki_TMT10x_P_F4 128.1 76.104 31006000 51426000 287740 57694000 39009000 46365000 33821000 36668000 35720000 35146000 40911000 28869000 48009000 2577500 58246000 37266000 47714000 34636000 37725000 36440000 34388000 39305000 4 4 2 4 4 4 4 4 4 4 4 14845000 22795000 1852 24337000 22229000 31593000 18508000 18462000 17118000 16769000 19097000 13821000 21276000 1119100 24827000 21207000 31442000 18925000 19383000 17546000 16448000 18361000 2 2 1 2 2 2 2 2 2 2 2 16161000 28631000 285890 33358000 16780000 14771000 15313000 18206000 18602000 18377000 21815000 15049000 26734000 1458500 33419000 16060000 16272000 15711000 18343000 18895000 17941000 20944000 2 2 1 2 2 2 2 2 2 2 2 1760800000 1195500000 565270000 9665 1269 8987 51833;51834;51835;51836;51837;51838;51839 62697;62698;62699;62700;62701;62702;62703;62704 62698 8 IVAERPGTNSTGPAPMAPPR Unmodified 2018.0367 0.036743217 1615 Q13263;Q13263-2 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 1 By MS/MS By MS/MS 5.67 3.3 1 2 2 1 28.505 28.608 3 1.4418E-32 4137 20211116_3436_TMUAki_TMT10x_P_F8 195.46 181.45 3814700 5605200 16445 8400500 9958700 7430700 5192900 3795900 3635600 3473200 5345500 3552000 5240700 417640 8358000 9430000 7548100 5468400 4033200 3827400 3405400 5103700 3 3 3 3 3 3 3 3 3 3 3 2885100 4053000 10884 6156200 9236500 6720400 4531800 3028000 2735700 2623600 3900000 2686400 3789700 338290 6140200 8738800 6728500 4787200 3252900 2903000 2579000 3726200 2 2 2 2 2 2 2 2 2 2 2 929620 1552200 5561.3 2244400 722130 710320 661110 767830 899920 849580 1445500 865610 1451000 79349 2217800 691210 819540 681180 780220 924420 826380 1377500 1 1 1 1 1 1 1 1 1 1 1 1426500000 914460000 512070000 9666 1615 8988 51840;51841;51842 62705;62706;62707 62706 3 IVAERPGTNSTGPAPMAPPRAPGPLSK Oxidation (M) 2684.4068 0.40681846 1615 Q13263;Q13263-2 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 1 2 By MS/MS By MS/MS 2.25 0.433 3 1 1 3 41.612 41.491 4;5 3.0591E-12 10774 20211116_3440_TMUAki_TMT10x_S_F2 106.28 90.686 5400500 9823400 129140 10681000 8231600 8724600 4803700 15601000 16176000 10854000 10632000 5029400 9169500 607230 10807000 7814500 9163200 5403900 15373000 15762000 10796000 10428000 8 8 7 8 8 8 8 8 8 8 8 1635900 2706300 36326 2984400 4248100 5720700 2530800 4813900 4919300 3200400 3012900 1523400 2526300 206060 3065900 4032300 5638700 2730800 4891900 4832400 3192200 2965500 2 2 2 2 2 2 2 2 2 2 2 3764700 7117100 92814 7696900 3983500 3003900 2273000 10787000 11256000 7653200 7619400 3506000 6643200 401160 7741000 3782200 3524600 2673100 10481000 10929000 7603700 7462700 6 6 5 6 6 6 6 6 6 6 6 1582600000 543370000 1039300000 9667 1615 8989 51843;51844;51845;51846 62708;62709;62710;62711;62712;62713;62714;62715 62713 2164 8 IVAERPGTNSTGPAPMAPPRAPGPLSK Unmodified 2668.4119 0.41190384 1615 Q13263;Q13263-2 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 2 By MS/MS By MS/MS 3 0 4 2 2 46.322 46.148 4;5 4.3318E-52 15558 20211116_3441_TMUAki_TMT10x_S_F3 212.77 199.35 7908400 12185000 69324 15884000 9466000 6601500 6117400 7198300 6149800 6181900 9663500 7363800 11383000 714420 15804000 8994700 7311100 6381300 7258200 6379700 6079400 9213300 5 5 4 5 5 5 5 5 5 5 5 1546700 2283100 18735 3143800 3253900 2804600 2109900 1207800 1001300 1148900 1796800 1440300 2133600 169600 3141300 3092300 2842200 2165700 1306800 1095400 1124500 1708700 1 1 1 1 1 1 1 1 1 1 1 6361700 9901600 50590 12740000 6212200 3796900 4007500 5990500 5148600 5032900 7866700 5923600 9249900 544820 12663000 5902400 4468900 4215600 5951300 5284300 4954900 7504600 4 4 3 4 4 4 4 4 4 4 4 889970000 356280000 533690000 9668 1615 8989 51847;51848;51849;51850 62716;62717;62718;62719;62720 62718 5 IVAHAVEVPAVQSPR Unmodified 1571.8784 0.87837531 2459 Q96FF9 CDCA5 Sororin yes yes 0 0 0 0 By MS/MS 7 0 1 1 42.448 42.909 3 0.050158 12508 20211116_3435_TMUAki_TMT10x_P_F7 41.542 26.34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9669 2459 8990 51851 62721 62721 1 IVAISCAADILK Unmodified 1272.7112 0.71115855 1953 Q5VYK3 ECM29 Proteasome-associated protein ECM29 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 74.526 74.47 2 2.1358E-16 24172 20211116_3436_TMUAki_TMT10x_P_F8 204.5 161.22 2186900 3393800 8478.5 3231900 2498900 4086500 2636800 2164400 1873700 2145700 2740500 2036300 3166200 193580 3321300 2400100 4067100 2643800 2297100 1970300 2096400 2616800 1 1 1 1 1 1 1 1 1 1 1 2186900 3393800 8478.5 3231900 2498900 4086500 2636800 2164400 1873700 2145700 2740500 2036300 3166200 193580 3321300 2400100 4067100 2643800 2297100 1970300 2096400 2616800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 589480000 314850000 274630000 9670 1953 8991 51852;51853;51854 62722;62723 62722 2 IVALNAHTFLR Unmodified 1253.7244 0.72444085 765;19 P22087;A6NHQ2 FBL;FBLL1 rRNA 2'-O-methyltransferase fibrillarin;rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 no no 0 0 0 0 By MS/MS By MS/MS 4 1.22 1 2 2 2 1 4 4 54.14 54.101 3 2.8675E-19 16531 20211116_3442_TMUAki_TMT10x_S_F4 229.82 202.51 8295700 13861000 83700 14796000 11992000 12914000 8598200 12489000 10890000 10123000 12146000 7724500 12937000 784240 15000000 11416000 13262000 8970000 12648000 11023000 9984200 11678000 7 7 5 7 7 7 7 7 7 7 7 3415000 5587200 20653 5745800 6777500 8740900 4648800 4853000 4179600 3940500 4575800 3179600 5214100 321440 5895300 6444500 8632500 4812200 5103100 4286600 3886100 4401800 3 3 2 3 3 3 3 3 3 3 3 4880700 8273900 63047 9050200 5214800 4172800 3949400 7635600 6710700 6182600 7570600 4544900 7723300 462800 9104900 4971900 4629600 4157700 7545100 6736700 6098100 7276400 4 4 3 4 4 4 4 4 4 4 4 3006900000 1406900000 1600000000 9671 765;19 8992 51855;51856;51857;51858;51859;51860;51861;51862 62724;62725;62726;62727;62728;62729;62730;62731;62732;62733 62731 10 IVALSSSLSNAK Unmodified 1188.6714 0.67140222 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 By MS/MS 2 0 2 2 57.817 57.564 3 7.5123E-05 18695 20211116_3429_TMUAki_TMT10x_P_F2 86.463 62.433 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9672 352 8993 51863;51864 62734;62735 62735 2 IVAPISDSPKPPPQR Unmodified 1600.8937 0.89369102 422 O95336 PGLS 6-phosphogluconolactonase yes yes 0 0 0 1 By MS/MS By MS/MS 7.75 0.433 1 3 2 2 41.562 41.829 3 6.8384E-10 10765 20211116_3436_TMUAki_TMT10x_P_F8 134.91 121.1 2206900 3694800 39126 4379700 4977000 4666300 2926200 3466500 3865100 2838200 3585100 2055100 3450200 256800 4423900 4722900 4709100 3104400 3566200 3881000 2797800 3467100 3 3 2 3 3 3 3 3 3 3 3 1552900 2686200 11390 3105100 4411500 4131600 2447400 2488800 2805700 2005200 2537400 1446000 2508100 177970 3153500 4181100 4108700 2596300 2598900 2829100 1978300 2456000 2 2 1 2 2 2 2 2 2 2 2 653950 1008600 27736 1274500 565550 534760 478810 977680 1059400 833000 1047700 609100 942130 78827 1270400 541780 600360 508190 967350 1052000 819510 1011000 1 1 1 1 1 1 1 1 1 1 1 381950000 264410000 117530000 9673 422 8994 51865;51866;51867;51868 62736;62737;62738;62739 62737 4 IVAPPGGR Unmodified 765.44972 0.44972255 1852;1691;1692 Q14195-2;Q14195;Q16555;Q16555-2;Q14194-2;Q14194 DPYSL3;DPYSL2;CRMP1 Dihydropyrimidinase-related protein 3;Dihydropyrimidinase-related protein 2;Dihydropyrimidinase-related protein 1 no no 0 0 0 0 By MS/MS By MS/MS 3.2 1.83 2 1 2 3 2 33.119 33.149 2 0.0049406 6437 20211116_3444_TMUAki_TMT10x_S_F5 96.666 59.021 7050400 11113000 62468 11232000 10245000 11557000 8162100 6510500 7339200 7142600 9504200 6565000 10370000 677350 11455000 9773900 11640000 8362600 6893100 7579200 6949800 9101300 5 5 3 5 5 5 5 5 5 5 5 5795500 8871700 31875 9067600 8808700 10238000 6489100 5042300 5748500 5628600 7659000 5396400 8279000 542910 9254100 8389200 10240000 6680500 5406400 5948300 5473000 7329200 3 3 2 3 3 3 3 3 3 3 3 1254900 2241300 30593 2164500 1436000 1319500 1673000 1468200 1590700 1514000 1845200 1168700 2091100 134440 2200900 1384700 1399700 1682100 1486700 1630900 1476800 1772100 2 2 1 2 2 2 2 2 2 2 2 311370000 252630000 58740000 9674 1692;1852;1691 8995 51869;51870;51871;51872;51873 62740;62741;62742;62743 62743 4 IVATKPLYVALAQR Unmodified 1541.9293 0.92934824 634 P11940;P11940-2;Q9H361 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 yes no 0 0 0 1 By MS/MS 6 0 1 1 60.575 60.582 3 3.0195E-05 18184 20211116_3445_TMUAki_TMT10x_S_F6 99.566 72.237 32102000 62041000 274510 52149000 53044000 24947000 32451000 49267000 39679000 37444000 49935000 29891000 57853000 3066600 53493000 50351000 27639000 34217000 48510000 40414000 37056000 47853000 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32102000 62041000 274510 52149000 53044000 24947000 32451000 49267000 39679000 37444000 49935000 29891000 57853000 3066600 53493000 50351000 27639000 34217000 48510000 40414000 37056000 47853000 4 4 2 4 4 4 4 4 4 4 4 804160000 0 804160000 9675 634 8996 51874 62744;62745;62746;62747 62745 4 IVATLPYIK Unmodified 1016.627 0.62701821 881 P30876 POLR2B DNA-directed RNA polymerase II subunit RPB2 yes yes 0 0 0 0 By MS/MS 3 0 1 1 68.044 67.582 2 0.00095772 24333 20211116_3441_TMUAki_TMT10x_S_F3 107.01 74.079 5250200 8813000 191500 10008000 6229600 5851700 5613500 8375100 7524600 7267400 8018300 4889900 8227900 627470 10064000 5969400 6274400 5785300 8354700 7588800 7143400 7719700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5250200 8813000 191500 10008000 6229600 5851700 5613500 8375100 7524600 7267400 8018300 4889900 8227900 627470 10064000 5969400 6274400 5785300 8354700 7588800 7143400 7719700 1 1 1 1 1 1 1 1 1 1 1 304130000 0 304130000 9676 881 8997 51875 62748 62748 1 IVDIIDTTGSGDVNTATEVEPK Unmodified 2273.1275 0.12745152 848 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 72.97 72.753 3 1.2882E-32 24821 20211116_3429_TMUAki_TMT10x_P_F2 174.65 159.88 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9677 848 8998 51876;51877;51878 62749;62750;62751 62749 3 IVDILYATDEGFVIPDEGGPQEEQEEY Unmodified 3054.387 0.38697327 1824 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 0 By MS/MS By MS/MS 1.75 0.433 1 3 3 1 83.837 83.836 3;4 1.3317E-12 29310 20211116_3429_TMUAki_TMT10x_P_F2 109.75 107.85 1084800 1733200 34446 1690700 1280700 2127800 1286600 1217100 1256600 1319200 1473700 1010300 1617100 113140 1734300 1230200 2120300 1303900 1286500 1287400 1284200 1414900 4 4 3 4 4 4 4 4 4 4 4 883150 1379700 30791 1377300 977660 1839600 999320 951900 1026300 1037900 1158600 822530 1287400 91596 1412200 939830 1825600 1013400 1015200 1047600 1010100 1113600 3 3 2 3 3 3 3 3 3 3 3 201600 353460 3655.1 313410 303050 288270 287330 265190 230350 281290 315070 187740 329670 21541 322180 290400 294710 290510 271280 239840 274060 301310 1 1 1 1 1 1 1 1 1 1 1 407340000 364000000 43347000 9678 1824 8999 51879;51880;51881;51882 62752;62753;62754;62755 62754 4 IVDLHSR Unmodified 838.4661 0.4661009 1716 Q14566 MCM6 DNA replication licensing factor MCM6 yes yes 0 0 0 0 By MS/MS 4 0 1 1 32.24 32.27 3 0.097203 7267 20211116_3431_TMUAki_TMT10x_P_F4 38.176 16.429 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9679 1716 9000 51883 62756 62756 1 IVDNVRPDR Unmodified 1082.5833 0.58325592 2049 Q7L014 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 31.153 31.138 3 0.0006469 6817 20211116_3431_TMUAki_TMT10x_P_F4 100.92 47.797 964070 1562700 21944 1463700 1480100 1810000 1223300 896390 1037700 1047300 1210800 897810 1457800 107610 1505400 1414000 1802100 1248500 962010 1070000 1016700 1162700 1 1 1 1 1 1 1 1 1 1 1 964070 1562700 21944 1463700 1480100 1810000 1223300 896390 1037700 1047300 1210800 897810 1457800 107610 1505400 1414000 1802100 1248500 962010 1070000 1016700 1162700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 58217000 58217000 0 9680 2049 9001 51884;51885 62757 62757 1 IVDPEIALK Unmodified 996.58555 0.58554733 907 P33240;P33240-2 CSTF2 Cleavage stimulation factor subunit 2 yes no 0 0 0 0 By MS/MS 4 0 1 1 62.738 62.85 2 0.082372 19643 20211116_3431_TMUAki_TMT10x_P_F4 58.596 44.078 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9681 907 9002 51886 62758 62758 1 IVDQIRPDR Unmodified 1110.6146 0.61455605 710;2368 P17844;P17844-2;Q92841;Q92841-3;Q92841-1;Q92841-2 DDX5;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 no no 0 0 0 1 By MS/MS By MS/MS 4.75 0.433 1 3 3 1 34.421 34.472 2;3 1.4839E-05 8243 20211116_3431_TMUAki_TMT10x_P_F4 154.84 107.85 4256900 6453200 3752.9 6672800 6618800 6833400 4734100 3779600 4256800 3787200 5183800 3963400 6022300 358350 6794300 6297300 6882900 4885800 3997200 4384300 3698400 4971900 3 3 1 3 3 3 3 3 3 3 3 3709400 5573300 0 5742000 6114300 6410600 4083900 3305400 3708000 3293400 4463100 3453600 5201200 310060 5855800 5809600 6419700 4237000 3517000 3815500 3217000 4282000 2 2 0 2 2 2 2 2 2 2 2 547490 879820 3752.9 930890 504550 422780 650260 474250 548760 493770 720700 509800 821160 48287 938460 487670 463200 648830 480170 568810 481440 689910 1 1 1 1 1 1 1 1 1 1 1 668240000 492890000 175350000 9682 710;2368 9003 51887;51888;51889;51890 62759;62760;62761;62762 62759 4 IVDRIDNDGDGFVTTEELK Unmodified 2135.0382 0.038242585 1787 Q15293;Q15293-2 RCN1 Reticulocalbin-1 yes no 0 0 0 1 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 62.253 62.044 3 1.0071E-24 22016 20211116_3441_TMUAki_TMT10x_S_F3 178.43 161.74 43611000 77862000 1135700 74547000 55148000 68572000 53184000 59898000 56713000 56254000 62153000 40615000 72641000 4829600 76195000 52897000 70030000 54159000 61228000 57735000 55091000 59788000 8 8 7 8 8 8 8 8 8 8 8 20298000 37087000 510460 34611000 28390000 46662000 28961000 30136000 27332000 27563000 30576000 18903000 34597000 2265800 35664000 27267000 46421000 29296000 31398000 27992000 27025000 29395000 4 4 3 4 4 4 4 4 4 4 4 23314000 40775000 625210 39936000 26758000 21910000 24223000 29761000 29381000 28691000 31577000 21712000 38044000 2563800 40531000 25631000 23608000 24862000 29831000 29742000 28066000 30393000 4 4 4 4 4 4 4 4 4 4 4 4740000000 2407700000 2332400000 9683 1787 9004 51891;51892;51893;51894;51895;51896 62763;62764;62765;62766;62767;62768;62769;62770 62768 8 IVEDEPNKICEADR Unmodified 1686.7883 0.78829925 1234 P55060;P55060-3;P55060-4;P55060-2 CSE1L Exportin-2 yes no 0 0 0 1 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 40.368 40.208 3 5.1347E-10 11656 20211116_3429_TMUAki_TMT10x_P_F2 138.91 120.94 4171900 7234000 76471 7035400 13151000 9737100 6100000 7177600 9257300 5500600 8157000 3884800 6749300 510030 7231700 12435000 9695400 6653900 7376700 9240500 5441200 7902800 6 6 4 6 6 6 6 6 6 6 6 2245500 3756400 38107 3552900 10844000 7617100 3779400 3794700 4984700 2906800 4211500 2090800 3504400 315020 3699700 10220000 7423200 4240300 4024500 4990900 2875500 4086700 2 2 1 2 2 2 2 2 2 2 2 1926500 3477500 38365 3482500 2306900 2120100 2320600 3382900 4272600 2593700 3945500 1794000 3244900 195010 3532000 2214300 2272200 2413600 3352200 4249600 2565700 3816200 4 4 3 4 4 4 4 4 4 4 4 263880000 155320000 108560000 9684 1234 9005 51897;51898;51899;51900;51901 62771;62772;62773;62774;62775;62776;62777 62772 7 IVEDEPNKICEADRVAIK Unmodified 2098.0729 0.072853952 1234 P55060;P55060-3;P55060-4;P55060-2 CSE1L Exportin-2 yes no 0 0 0 2 By MS/MS By MS/MS 4 0 2 1 1 49.494 49.639 4 2.3451E-12 14188 20211116_3431_TMUAki_TMT10x_P_F4 137.61 115.77 12483000 22520000 160500 18394000 30130000 35597000 18008000 34137000 33228000 25899000 24111000 11624000 20998000 1381300 19313000 28592000 35170000 19371000 34535000 32814000 25633000 23541000 3 3 2 3 3 3 3 3 3 3 3 7895900 13855000 76397 11785000 24519000 30663000 14626000 19792000 20100000 15623000 14601000 7352100 12920000 908250 12451000 23263000 29829000 15522000 20547000 20014000 15430000 14256000 2 2 1 2 2 2 2 2 2 2 2 4587100 8665400 84106 6609100 5610900 4933900 3382500 14344000 13128000 10276000 9509700 4271600 8078000 473020 6862600 5329000 5341100 3849200 13987000 12800000 10204000 9285700 1 1 1 1 1 1 1 1 1 1 1 1291300000 962780000 328500000 9685 1234 9006 51902;51903 62778;62779;62780 62778 3 IVEFLQSFDEITAMTGDGVNDAPALK Oxidation (M) 2796.3528 0.35277679 697 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 1 0 By MS/MS By MS/MS 5 0.894 2 1 2 2 3 82.553 82.562 3;4 2.8352E-24 27743 20211116_3431_TMUAki_TMT10x_P_F4 157.83 143.06 5007100 8459600 16941 7410400 5905600 6346900 6449500 4277600 4662700 5020400 6467100 4661800 7889800 319860 7618100 5673500 6484900 6458300 4475900 4885700 4872600 6182700 6 6 2 6 6 6 6 6 6 6 6 1667300 2950000 15048 2266600 1442900 3254900 2039600 2000600 2329600 2273800 2525800 1552500 2750100 84231 2375400 1399400 3226700 2046700 2105500 2364200 2209400 2430500 2 2 1 2 2 2 2 2 2 2 2 3339800 5509600 1893.3 5143800 4462700 3092000 4409900 2277100 2333100 2746600 3941200 3109200 5139700 235630 5242700 4274100 3258200 4411600 2370400 2521500 2663100 3752200 4 4 1 4 4 4 4 4 4 4 4 1362800000 406140000 956670000 9686 697 9007 51904;51905;51906;51907;51908 62781;62782;62783;62784;62785;62786 62781 781 6 IVEGILK Unmodified 770.49019 0.49019038 1794 Q15370;Q15370-2 TCEB2 Transcription elongation factor B polypeptide 2 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 57.417 57.53 2 0.010977 16940 20211116_3445_TMUAki_TMT10x_S_F6 97.602 37.451 36011000 57531000 460620 58427000 46661000 52926000 40687000 40574000 39404000 40695000 47549000 33533000 53686000 3548100 59460000 44618000 53979000 41543000 41880000 40432000 39739000 45617000 5 5 4 5 5 5 5 5 5 5 5 15341000 22764000 132040 24330000 23702000 31348000 18327000 17173000 16594000 17044000 18990000 14285000 21247000 1496100 24815000 22598000 31184000 18818000 18172000 17043000 16651000 18245000 2 2 1 2 2 2 2 2 2 2 2 20670000 34766000 328580 34097000 22960000 21578000 22360000 23401000 22809000 23650000 28559000 19248000 32438000 2052000 34645000 22020000 22795000 22726000 23708000 23389000 23088000 27371000 3 3 3 3 3 3 3 3 3 3 3 1173700000 778730000 394990000 9687 1794 9008 51909;51910;51911;51912 62787;62788;62789;62790;62791 62791 5 IVEIGDENATLDGTDVLFTGR Unmodified 2234.1067 0.1066565 451 O95865 DDAH2 N(G),N(G)-dimethylarginine dimethylaminohydrolase 2 yes yes 0 0 0 0 By MS/MS 1 0 1 1 78.67 78.67 3 0.0011079 25758 20211116_3428_TMUAki_TMT10x_P_F1 60.747 49.477 3760200 6381400 2823.7 5559800 3544800 7531000 4396400 3819000 3725300 3969200 4750800 3501000 5951400 296470 5759400 3419600 7467100 4394100 4074700 3855600 3870300 4551200 2 2 1 2 2 2 2 2 2 2 2 3760200 6381400 2823.7 5559800 3544800 7531000 4396400 3819000 3725300 3969200 4750800 3501000 5951400 296470 5759400 3419600 7467100 4394100 4074700 3855600 3870300 4551200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 479190000 479190000 0 9688 451 9009 51913 62792;62793 62792 2 IVELPAPADFLSLSSETKPK Unmodified 2141.162 0.16198654 1995 Q6P2E9;Q6P2E9-2 EDC4 Enhancer of mRNA-decapping protein 4 yes no 0 0 0 1 By MS/MS By matching 7.6 0.49 2 3 3 2 78.363 78.374 3;4 6.8038E-09 25702 20211116_3436_TMUAki_TMT10x_P_F8 109.89 92.61 13351000 21130000 204490 19555000 9940500 27438000 11179000 15447000 10240000 14400000 14689000 12433000 19711000 1219000 20178000 9572900 27197000 11246000 16279000 10616000 14107000 14032000 3 3 2 3 3 3 3 3 3 3 3 13351000 21130000 204490 19555000 9940500 27438000 11179000 15447000 10240000 14400000 14689000 12433000 19711000 1219000 20178000 9572900 27197000 11246000 16279000 10616000 14107000 14032000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3627900000 2416100000 1211800000 9689 1995 9010 51914;51915;51916;51917;51918 62794;62795;62796 62795 3 IVEMSTSK Unmodified 893.45282 0.4528186 1404 P63241;P63241-2;Q9GZV4 EIF5A;EIF5A2 Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2 yes no 0 0 0 0 By MS/MS 5 0 1 1 43.029 43.132 2 0.002124 11900 20211116_3433_TMUAki_TMT10x_P_F5 124.98 39.718 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9690 1404 9011 51919 62797 62797 1 IVEMSTSK Oxidation (M) 909.44773 0.44773322 1404 P63241;P63241-2;Q9GZV4 EIF5A;EIF5A2 Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2 yes no 0 0 1 0 By MS/MS 5.5 0.5 1 1 2 33.693 33.866 2 0.065765 7353 20211116_3445_TMUAki_TMT10x_S_F6 59.8 23.099 99100 160220 0 154910 103050 84131 104610 44636 51560 52779 102650 92254 149480 6056.2 157350 98702 89186 104390 47620 56588 51211 97445 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 99100 160220 0 154910 103050 84131 104610 44636 51560 52779 102650 92254 149480 6056.2 157350 98702 89186 104390 47620 56588 51211 97445 1 1 0 1 1 1 1 1 1 1 1 10043000 0 10043000 9691 1404 9011 51920;51921 62798 62798 1885 1 IVENSDAVTEILNNAELLK Unmodified 2084.1001 0.10011456 1843 Q16401;Q16401-2 PSMD5 26S proteasome non-ATPase regulatory subunit 5 yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 80.405 80.362 3 1.819E-08 27244 20211116_3442_TMUAki_TMT10x_S_F4 107.72 88.4 2956100 5064900 4005.7 4574900 3200500 4758000 4047000 2935800 2566600 3728200 3710400 2752400 4724200 242700 4704500 3089700 4794900 4015000 3100600 2716500 3608600 3543800 2 2 1 2 2 2 2 2 2 2 2 1534300 2612500 0 2327100 1546300 3010400 1744100 1471400 1432300 1793200 1955600 1428500 2436600 117830 2404400 1487100 2990100 1749100 1583300 1489400 1738100 1870300 1 1 0 1 1 1 1 1 1 1 1 1421800 2452400 4005.7 2247900 1654200 1747600 2303000 1464400 1134300 1935000 1754700 1323900 2287600 124870 2300200 1602700 1804800 2265900 1517300 1227100 1870400 1673500 1 1 1 1 1 1 1 1 1 1 1 1142100000 402800000 739310000 9692 1843 9012 51922;51923;51924 62799;62800;62801 62801 3 IVEPYIAWGYPNLK Unmodified 1661.8817 0.88172935 716 P18124 RPL7 60S ribosomal protein L7 yes yes 0 0 0 0 By MS/MS By MS/MS 3.13 2.09 4 12 6 4 4 15 15 61.47 61.442 2;3 3.6761E-37 25699 20211116_3428_TMUAki_TMT10x_P_F1 246.41 117.02 149620000 237590000 527760 246790000 163430000 164800000 187810000 73571000 62594000 91652000 152680000 139300000 221730000 11323000 249890000 157230000 170890000 185350000 79947000 72355000 88767000 144500000 25 25 13 25 25 25 25 25 25 25 25 75888000 118620000 115420 120060000 76827000 103820000 97358000 34131000 26873000 42895000 74996000 70653000 110690000 5521000 122140000 74131000 105200000 95499000 38481000 32130000 41533000 70856000 9 9 3 9 9 9 9 9 9 9 9 73731000 118970000 412330 126730000 86602000 60973000 90450000 39441000 35721000 48757000 77683000 68646000 111040000 5802200 127750000 83103000 65687000 89852000 41466000 40224000 47235000 73639000 16 16 10 16 16 16 16 16 16 16 16 27528000000 15352000000 12176000000 9693 716 9013 51925;51926;51927;51928;51929;51930;51931;51932;51933;51934;51935;51936;51937;51938;51939;51940;51941;51942;51943;51944;51945;51946;51947;51948;51949;51950;51951;51952;51953;51954 62802;62803;62804;62805;62806;62807;62808;62809;62810;62811;62812;62813;62814;62815;62816;62817;62818;62819;62820;62821;62822;62823;62824;62825;62826;62827;62828;62829;62830;62831;62832;62833 62802 32 IVEPYVTWGFPNLK Unmodified 1661.8817 0.88172935 1969 Q6DKI1 RPL7L1 60S ribosomal protein L7-like 1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 79.481 79.431 2 1.7739E-23 28991 20211116_3441_TMUAki_TMT10x_S_F3 169.37 88.686 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9694 1969 9014 51955 62834 62834 1 IVETEAYLGPEDEAAHSR Unmodified 1985.933 0.93304923 851 P29372;P29372-5;P29372-4;P29372-2 MPG DNA-3-methyladenine glycosylase yes no 0 0 0 0 By MS/MS 1 0 1 1 47.564 47.564 3 1.6633E-10 13034 20211116_3428_TMUAki_TMT10x_P_F1 116.83 106.91 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9695 851 9015 51956 62835 62835 1 IVEVLLMK Unmodified 943.57763 0.57762518 969 P38159;P38159-2;P38159-3;O75526 RBMX;RBMXL2 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA-binding motif protein, X-linked-like-2 yes no 0 0 0 0 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 78.573 78.578 2 0.00098332 25709 20211116_3428_TMUAki_TMT10x_P_F1 130.34 69.377 38797000 61579000 537910 67457000 42039000 46240000 47276000 15998000 17023000 23396000 39917000 36128000 57482000 3763200 68085000 40473000 47735000 46744000 18013000 19454000 22545000 37797000 3 3 3 3 3 3 3 3 3 3 3 25116000 39545000 413780 42481000 31607000 35382000 32165000 10041000 11444000 15039000 25606000 23389000 36911000 2558900 43024000 30346000 35913000 31956000 11638000 13051000 14482000 24263000 2 2 2 2 2 2 2 2 2 2 2 13680000 22034000 124130 24976000 10432000 10858000 15111000 5956500 5579100 8357100 14311000 12739000 20571000 1204400 25061000 10128000 11822000 14788000 6375400 6402800 8063100 13535000 1 1 1 1 1 1 1 1 1 1 1 4234000000 2785400000 1448700000 9696 969 9016 51957;51958;51959;51960;51961;51962 62836;62837;62838 62836 3 IVEVLLMK Oxidation (M) 959.57254 0.5725398 969 P38159;P38159-2;P38159-3;O75526 RBMX;RBMXL2 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA-binding motif protein, X-linked-like-2 yes no 0 0 1 0 By MS/MS By MS/MS 5.43 2.87 2 1 2 2 4 3 75.429 75.437 2 0.0036629 23860 20211116_3447_TMUAki_TMT10x_S_F8 108.46 51.18 45276000 72520000 645570 71002000 47656000 77258000 53803000 62021000 75244000 66332000 61319000 42160000 67664000 4307500 72634000 45883000 77977000 54917000 63956000 75116000 64606000 59584000 8 8 7 8 8 8 8 8 8 8 8 21563000 34144000 306000 33161000 28577000 47529000 26392000 28785000 33302000 29529000 28065000 20079000 31856000 2171100 34114000 27365000 47112000 27098000 30235000 33391000 28809000 27235000 4 4 4 4 4 4 4 4 4 4 4 23713000 38377000 339580 37840000 19078000 29729000 27412000 33236000 41942000 36803000 33255000 22081000 35807000 2136400 38520000 18518000 30865000 27819000 33722000 41725000 35797000 32348000 4 4 3 4 4 4 4 4 4 4 4 6216200000 3263000000 2953200000 9697 969 9016 51963;51964;51965;51966;51967;51968;51969 62839;62840;62841;62842;62843;62844;62845;62846 62845 1228 8 IVFEDGNINVNK Unmodified 1360.6987 0.69867961 1691 Q14194-2;Q14194 CRMP1 Dihydropyrimidinase-related protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.667 1 4 4 5 4 61.572 61.662 2;3 6.4424E-24 18641 20211116_3445_TMUAki_TMT10x_S_F6 243.53 203.91 17353000 26562000 44140 31342000 23160000 25075000 17704000 22580000 22283000 20513000 22956000 16157000 24803000 1512800 31543000 22069000 25875000 18385000 23022000 22493000 20119000 22124000 5 5 3 5 5 5 5 5 5 5 5 8942100 12872000 6611.7 14943000 15559000 18688000 11408000 10411000 10572000 9871200 11098000 8325600 12019000 791800 15154000 14811000 18621000 11763000 10987000 10811000 9662900 10690000 3 3 1 3 3 3 3 3 3 3 3 8410900 13690000 37528 16400000 7601200 6386900 6296400 12169000 11711000 10642000 11858000 7831700 12784000 720960 16389000 7257800 7254100 6622500 12035000 11682000 10456000 11434000 2 2 2 2 2 2 2 2 2 2 2 2103800000 1108700000 995100000 9698 1691 9017 51970;51971;51972;51973;51974;51975;51976;51977;51978 62847;62848;62849;62850;62851;62852;62853;62854 62853 8 IVFNLCPLQTEDDK Unmodified 1690.8236 0.82362212 2287 Q8TEQ6 GEMIN5 Gem-associated protein 5 yes yes 0 0 0 0 By MS/MS 6 0 1 1 76.498 76.46 3 0.0040196 24295 20211116_3434_TMUAki_TMT10x_P_F6 64.394 46.905 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9699 2287 9018 51979 62855 62855 1 IVFQEFR Unmodified 937.50215 0.50215205 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 no no 0 0 0 0 By MS/MS By MS/MS 6.25 0.829 1 1 2 3 1 57.359 57.738 2 0.0020818 18974 20211116_3446_TMUAki_TMT10x_S_F7 130.04 87.125 32762000 54236000 313150 59129000 45554000 54528000 34122000 43956000 40720000 36350000 43486000 30506000 50626000 3132300 59907000 43408000 55595000 35413000 44998000 41235000 35815000 41863000 6 6 4 6 6 6 6 6 6 6 6 22089000 34951000 236400 38134000 32630000 45313000 25844000 25864000 24164000 21769000 25878000 20568000 32625000 2150700 38786000 31128000 45282000 26517000 27156000 24717000 21430000 24910000 4 4 3 4 4 4 4 4 4 4 4 10673000 19285000 76757 20995000 12925000 9215000 8278100 18092000 16555000 14580000 17608000 9938500 18001000 981530 21121000 12280000 10314000 8896000 17842000 16517000 14385000 16953000 2 2 1 2 2 2 2 2 2 2 2 1712800000 1194300000 518570000 9700 935 9019 51980;51981;51982;51983 62856;62857;62858;62859;62860;62861 62861 6 IVFVPGCSIPLTIVK Unmodified 1641.9528 0.9527858 1218 P54136;P54136-2 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 4.86 0.639 2 4 1 4 3 79.333 79.341 2;3 2.5998E-14 26692 20211116_3433_TMUAki_TMT10x_P_F5 155.15 131.3 27372000 46337000 630300 43578000 29297000 46081000 34368000 28847000 26897000 29320000 34122000 25490000 43227000 2821700 44689000 28253000 46403000 34365000 30213000 27946000 28616000 32693000 8 8 6 8 8 8 8 8 8 8 8 20687000 34060000 505420 32010000 20394000 37643000 24799000 21136000 18137000 20803000 24585000 19265000 31774000 2171200 32884000 19695000 37630000 24718000 22312000 18971000 20331000 23517000 6 6 5 6 6 6 6 6 6 6 6 6685200 12276000 124880 11568000 8903500 8437700 9568800 7711200 8760300 8516100 9536900 6225100 11452000 650470 11805000 8558000 8772600 9646200 7901000 8975000 8284100 9175800 2 2 1 2 2 2 2 2 2 2 2 5664100000 3150900000 2513100000 9701 1218 9020 51984;51985;51986;51987;51988;51989;51990 62862;62863;62864;62865;62866;62867;62868;62869;62870 62865 9 IVGAPMHDLLLWNNATVTTCHSK Oxidation (M) 2593.2781 0.27811248 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 1 0 By MS/MS 1 0 1 1 58.293 58.293 4 1.8094E-07 17466 20211116_3428_TMUAki_TMT10x_P_F1 89.663 75.932 6332400 10170000 96258 10401000 8662100 14195000 8720600 8045900 6724600 7880500 8375500 5896600 9490700 623210 10651000 8311300 14089000 8780800 8486000 6987000 7703400 8028400 2 2 1 2 2 2 2 2 2 2 2 6332400 10170000 96258 10401000 8662100 14195000 8720600 8045900 6724600 7880500 8375500 5896600 9490700 623210 10651000 8311300 14089000 8780800 8486000 6987000 7703400 8028400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 939110000 939110000 0 9702 629 9021 51991 62871;62872 62872 651 2 IVGAPMHDLLLWNNATVTTCHSK Unmodified 2577.2832 0.28319785 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 67.164 66.91 4 1.3917E-15 23038 20211116_3430_TMUAki_TMT10x_P_F3 133.26 124.44 8623900 15420000 76022 15568000 10725000 9906700 10503000 8920800 8088000 8773000 11571000 8030200 14389000 798370 15787000 10282000 10419000 10590000 9115400 8457400 8574300 11054000 3 3 2 3 3 3 3 3 3 3 3 2133400 3631500 0 3549400 2711300 4023700 2974400 2208300 2080000 2183400 2829000 1986300 3388200 168080 3633900 2605200 4029000 2975600 2336100 2181800 2133500 2705800 1 1 0 1 1 1 1 1 1 1 1 6490500 11789000 76022 12019000 8014200 5883000 7528600 6712500 6008000 6589600 8741600 6043900 11001000 630300 12153000 7676700 6390400 7614900 6779200 6275600 6440800 8348000 2 2 2 2 2 2 2 2 2 2 2 1249300000 461250000 788040000 9703 629 9021 51992;51993 62873;62874;62875 62873 3 IVGELEQMVSEDVPLDHR Oxidation (M) 2081.0099 0.0099193444 1467 Q00341;Q00341-2 HDLBP Vigilin yes no 0 0 1 0 By MS/MS 1 0 1 1 72.82 72.82 3 2.9205E-08 23327 20211116_3428_TMUAki_TMT10x_P_F1 108.96 97.696 3646600 6123900 82295 5274100 3491900 7355300 4047900 4700800 4949800 4675800 4558700 3396000 5711100 376860 5471600 3367200 7305100 4104800 4912600 4982300 4567700 4409800 2 2 2 2 2 2 2 2 2 2 2 3646600 6123900 82295 5274100 3491900 7355300 4047900 4700800 4949800 4675800 4558700 3396000 5711100 376860 5471600 3367200 7305100 4104800 4912600 4982300 4567700 4409800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 601570000 601570000 0 9704 1467 9022 51994 62876;62877 62876 1969 2 IVGLDQVTGMTETAFGSAYK Oxidation (M) 2103.0194 0.019421398 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 1 0 By MS/MS By MS/MS 6.88 0.927 1 1 4 2 3 5 75.691 75.733 2;3 1.1527E-24 26007 20211116_3435_TMUAki_TMT10x_P_F7 177.42 165.06 23147000 42297000 157340 32416000 27714000 41314000 30189000 33279000 33751000 34413000 33130000 21552000 39430000 1639600 33901000 26635000 41359000 30603000 34276000 34158000 33563000 31979000 11 11 4 11 11 11 11 11 11 11 11 10761000 18548000 0 14424000 10438000 23518000 13116000 14688000 14212000 15265000 14430000 10018000 17292000 582580 15143000 10066000 23199000 13198000 15396000 14418000 14885000 13913000 5 5 0 5 5 5 5 5 5 5 5 12386000 23749000 157340 17992000 17276000 17796000 17074000 18592000 19539000 19148000 18700000 11534000 22138000 1057000 18758000 16570000 18159000 17406000 18879000 19740000 18678000 18066000 6 6 4 6 6 6 6 6 6 6 6 9430300000 4029200000 5401000000 9705 935 9023 51995;51996;51997;51998;51999;52000;52001;52002 62878;62879;62880;62881;62882;62883;62884;62885;62886;62887;62888;62889 62879 1189 12 IVGLDQVTGMTETAFGSAYK Unmodified 2087.0245 0.024506776 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 79.065 79.084 3 1.8864E-18 25414 20211116_3447_TMUAki_TMT10x_S_F8 151.95 138.97 26560000 45976000 418450 46401000 30402000 28854000 32926000 15493000 14348000 17751000 28989000 24732000 42902000 2540200 47044000 29233000 30177000 32691000 16494000 15930000 17244000 27512000 6 6 3 6 6 6 6 6 6 6 6 7026600 11151000 137330 11645000 6396600 10606000 7959400 5502300 4996700 5140400 7116500 6543300 10407000 668910 11829000 6178800 10754000 7900100 5841100 5288100 5035300 6799400 2 2 1 2 2 2 2 2 2 2 2 19533000 34825000 281120 34756000 24005000 18248000 24967000 9990600 9351700 12611000 21873000 18189000 32495000 1871300 35215000 23054000 19423000 24791000 10653000 10641000 12209000 20712000 4 4 2 4 4 4 4 4 4 4 4 5358500000 2717600000 2640900000 9706 935 9023 52003;52004;52005;52006 62890;62891;62892;62893;62894;62895 62894 6 IVGPSGAAVPCK Unmodified 1154.6118 0.61177885 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS 8 0 1 1 45.983 45.925 3 0.0087895 11969 20211116_3447_TMUAki_TMT10x_S_F8 63.624 47.4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9707 755 9024 52007 62896 62896 1 IVGPSGAAVPCKVEPGLGADNSVVR Unmodified 2448.2795 0.27949268 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 1 By MS/MS By MS/MS 7.33 0.667 1 4 4 4 5 55.612 55.946 3;4 2.3332E-29 16520 20211116_3436_TMUAki_TMT10x_P_F8 163.74 150.01 31334000 59333000 371500 47220000 49043000 63839000 39435000 53942000 50973000 48218000 50844000 29176000 55319000 2930600 49276000 46788000 63788000 40860000 55172000 51347000 47328000 49051000 9 9 5 9 9 9 9 9 9 9 9 18810000 33589000 109580 27961000 32367000 49081000 27734000 29479000 27392000 26820000 28211000 17513000 31321000 1631000 29238000 30911000 48257000 28363000 30882000 27911000 26303000 27189000 5 5 2 5 5 5 5 5 5 5 5 12524000 25744000 261920 19259000 16675000 14758000 11701000 24463000 23581000 21398000 22633000 11663000 23998000 1299500 20038000 15877000 15531000 12497000 24291000 23436000 21025000 21863000 4 4 3 4 4 4 4 4 4 4 4 8475200000 4179000000 4296200000 9708 755 9025 52008;52009;52010;52011;52012;52013;52014;52015;52016 62897;62898;62899;62900;62901;62902;62903;62904;62905;62906 62901 10 IVGWYHTGPK Unmodified 1156.6029 0.60292873 1162 P51665 PSMD7 26S proteasome non-ATPase regulatory subunit 7 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 46.9 46.786 3 6.5382E-05 15838 20211116_3441_TMUAki_TMT10x_S_F3 88.496 71.06 3504800 5861100 31370 7255000 7907200 6445500 5284500 3947400 3856700 3783000 4898000 3263400 5474200 364180 7290700 7516700 6560100 5453200 4134600 4023000 3701400 4692700 3 3 1 3 3 3 3 3 3 3 3 2333000 3934700 31370 4730500 6609700 5511900 4117400 2622800 2512200 2477700 3153100 2172400 3674500 271640 4781400 6276200 5502000 4257000 2808100 2648700 2425900 3021900 2 2 1 2 2 2 2 2 2 2 2 1171700 1926400 0 2524400 1297500 933630 1167100 1324700 1344500 1305200 1744900 1090900 1799700 92539 2509300 1240400 1058000 1196200 1326500 1374300 1275600 1670800 1 1 0 1 1 1 1 1 1 1 1 281020000 220470000 60549000 9709 1162 9026 52017;52018;52019;52020 62907;62908;62909;62910 62910 4 IVGYFVSGCDPSIMGIGPVPAISGALK Oxidation (M) 2720.3917 0.39174525 1019 P42765 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes yes 0 0 1 0 By MS/MS By matching 3 0 2 1 1 80.316 80.261 4 0.008628 28362 20211116_3430_TMUAki_TMT10x_P_F3 43.091 34.16 3179000 5512400 336030 4897100 3469500 5257600 3425200 2516000 3290600 3042300 3271300 2962400 5141400 580790 5044700 3346000 5272300 3472500 2712200 3352800 2949600 3156300 1 1 1 1 1 1 1 1 1 1 1 3179000 5512400 336030 4897100 3469500 5257600 3425200 2516000 3290600 3042300 3271300 2962400 5141400 580790 5044700 3346000 5272300 3472500 2712200 3352800 2949600 3156300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1783800000 995650000 788120000 9710 1019 9027 52021;52022 62911 62911 1318 1 IVHAFDMEDLGDK Oxidation (M) 1504.6868 0.68679429 3028 Q9NZ45 CISD1 CDGSH iron-sulfur domain-containing protein 1 yes yes 0 0 1 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 51.87 51.761 3 0.00028676 16817 20211116_3430_TMUAki_TMT10x_P_F3 81.494 57.889 6784900 9807500 0 10842000 9535700 10882000 7917400 7706000 8343600 6729300 8224000 6316400 9155300 467870 10988000 9093900 11012000 8128800 7966000 8465300 6612400 7937100 3 3 0 3 3 3 3 3 3 3 3 5089900 7224700 0 7836800 8072000 9573200 6402900 5475500 5992700 4898700 5845000 4738500 6743700 382930 7977600 7692600 9553300 6569300 5756600 6109300 4808100 5643000 2 2 0 2 2 2 2 2 2 2 2 1695000 2582700 0 3004700 1463700 1308900 1514500 2230600 2350800 1830600 2379000 1577800 2411500 84945 3010100 1401300 1458700 1559400 2209400 2356000 1804300 2294000 1 1 0 1 1 1 1 1 1 1 1 736110000 626010000 110100000 9711 3028 9028 52023;52024;52025;52026 62912;62913;62914;62915 62912 3078 4 IVHELNTTVPTASFAGK Unmodified 1783.9468 0.9468488 1900 Q4VC31 CCDC58 Coiled-coil domain-containing protein 58 yes yes 0 0 0 0 By MS/MS 7 0 1 1 54.433 55.153 3 1.1432E-06 17379 20211116_3435_TMUAki_TMT10x_P_F7 94.128 77.821 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9712 1900 9029 52027 62916 62916 1 IVHLQETCDLGK Unmodified 1411.7129 0.71294946 2732 Q9BYT8 NLN Neurolysin, mitochondrial yes yes 0 0 0 0 By MS/MS 5 0 1 1 45.224 45.377 3 1.5838E-05 11657 20211116_3444_TMUAki_TMT10x_S_F5 96.745 83.626 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9713 2732 9030 52028 62917 62917 1 IVHSLDYYNTCEYPNEDEMPNR Oxidation (M) 2774.1588 0.15884478 2715 Q9BXP5;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3 SRRT Serrate RNA effector molecule homolog yes no 0 0 1 0 By MS/MS 4 0.816 1 1 1 3 50.693 50.669 3 3.3081E-14 15099 20211116_3442_TMUAki_TMT10x_S_F4 125.91 118.37 994950 1885800 0 1962000 959120 1032100 723870 2040000 1954400 1849500 1759700 926300 1759900 69206 1982200 912900 1131400 784650 2017500 1927500 1814200 1703500 4 4 0 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 994950 1885800 0 1962000 959120 1032100 723870 2040000 1954400 1849500 1759700 926300 1759900 69206 1982200 912900 1131400 784650 2017500 1927500 1814200 1703500 4 4 0 4 4 4 4 4 4 4 4 780420000 0 780420000 9714 2715 9031 52029;52030;52031 62918;62919;62920;62921 62920 2916 4 IVIDFDSINSRPSQK Unmodified 1717.8999 0.89989861 901 P32321;P32321-2 DCTD Deoxycytidylate deaminase yes no 0 0 0 1 By MS/MS 8 0 1 1 58.914 58.905 3 0.00035544 17209 20211116_3447_TMUAki_TMT10x_S_F8 79.471 0.12406 3900800 6434600 78062 7331700 3892500 3593300 3842500 5696600 5484700 4858600 5480800 3632600 6007500 396040 7360300 3735700 3938500 3951000 5660700 5507700 4779700 5287300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3900800 6434600 78062 7331700 3892500 3593300 3842500 5696600 5484700 4858600 5480800 3632600 6007500 396040 7360300 3735700 3938500 3951000 5660700 5507700 4779700 5287300 1 1 1 1 1 1 1 1 1 1 1 448650000 0 448650000 9715 901 9032 52032 62922 62922 1 IVIFTQGR Unmodified 932.54435 0.54435122 1241 P55263;P55263-3;P55263-4;P55263-2 ADK Adenosine kinase yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 53.986 53.606 2 0.027435 18638 20211116_3441_TMUAki_TMT10x_S_F3 64.734 47.039 2212000 3829500 0 4001700 2365500 2072400 2043000 3056300 2811300 2884800 3176400 2059500 3574000 167570 4041400 2258800 2252300 2112900 3052600 2839300 2824500 3052900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2212000 3829500 0 4001700 2365500 2072400 2043000 3056300 2811300 2884800 3176400 2059500 3574000 167570 4041400 2258800 2252300 2112900 3052600 2839300 2824500 3052900 1 1 0 1 1 1 1 1 1 1 1 61943000 0 61943000 9716 1241 9033 52033;52034 62923;62924 62924 2 IVIGMDVAASEFYR Oxidation (M) 1585.781 0.78102903 568 P09104;P09104-2 ENO2 Gamma-enolase yes no 0 0 1 0 By MS/MS By MS/MS 5.43 0.495 4 3 3 4 66.534 66.591 2;3 3.0921E-09 21433 20211116_3433_TMUAki_TMT10x_P_F5 136.36 123.78 17177000 29764000 490600 25386000 21741000 31645000 22725000 24324000 24406000 25473000 22536000 15997000 27757000 1883600 26301000 20897000 31687000 23052000 25135000 24689000 24831000 21798000 7 7 4 7 7 7 7 7 7 7 7 9494000 16363000 267600 14227000 11502000 22354000 12257000 14328000 13534000 14133000 12761000 8841300 15260000 1003000 14786000 11060000 22091000 12433000 14967000 13685000 13811000 12334000 4 4 1 4 4 4 4 4 4 4 4 7682900 13401000 223000 11160000 10239000 9290600 10468000 9996600 10872000 11340000 9774800 7155200 12496000 880590 11515000 9836600 9595800 10619000 10168000 11004000 11020000 9463400 3 3 3 3 3 3 3 3 3 3 3 2868600000 1980000000 888700000 9717 568 9034 52035;52036;52037;52038;52039;52040;52041 62925;62926;62927;62928;62929;62930;62931;62932;62933 62925 538 9 IVIGYQSHADTATK Unmodified 1502.7729 0.77290718 519 P06730;P06730-2;P06730-3 EIF4E Eukaryotic translation initiation factor 4E yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.745 1 2 3 3 3 40.297 40.613 3 1.0836E-19 11603 20211116_3435_TMUAki_TMT10x_P_F7 176.43 139.45 4534400 7204400 29211 8475100 10728000 9082100 5466900 5658600 6406200 5037400 6030900 4222200 6727200 489900 8565300 10156000 9137900 5849500 5907400 6462800 4945400 5829400 4 4 4 4 4 4 4 4 4 4 4 3668700 6012100 21751 6897300 9846300 8377100 4647500 4666300 5353000 4179400 4832500 3416000 5613200 410950 6996000 9311700 8359400 5007800 4917100 5396400 4101900 4677900 2 2 2 2 2 2 2 2 2 2 2 865730 1192300 7459.7 1577700 881870 704960 819450 992240 1053200 858010 1198400 806130 1114000 78953 1569300 844460 778460 841710 990330 1066400 843510 1151600 2 2 2 2 2 2 2 2 2 2 2 821580000 674680000 146910000 9718 519 9035 52042;52043;52044;52045;52046;52047 62934;62935;62936;62937;62938;62939 62936 6 IVILDEADSMTSAAQAALRR Oxidation (M) 2146.1052 0.10521671 928 P35249;P35249-2 RFC4 Replication factor C subunit 4 yes no 0 0 1 1 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 60.877 60.942 3 0.0037553 17991 20211116_3444_TMUAki_TMT10x_S_F5 56.906 44.413 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9719 928 9036 52048;52049 62940;62941 62941 1165 2 IVILDEADSMTSAAQAALRR Unmodified 2130.1103 0.11030209 928 P35249;P35249-2 RFC4 Replication factor C subunit 4 yes no 0 0 0 1 By MS/MS 7 0 1 1 76.97 77.052 3 2.1153E-05 27046 20211116_3446_TMUAki_TMT10x_S_F7 80.585 60.062 9412100 16477000 144120 13917000 13990000 10806000 12738000 6867700 7874700 8701100 11766000 8764700 15365000 978750 14332000 13391000 11112000 12836000 7236300 8362100 8422400 11229000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9412100 16477000 144120 13917000 13990000 10806000 12738000 6867700 7874700 8701100 11766000 8764700 15365000 978750 14332000 13391000 11112000 12836000 7236300 8362100 8422400 11229000 1 1 1 1 1 1 1 1 1 1 1 826170000 0 826170000 9720 928 9036 52050 62942 62942 1 IVILEYQPSK Unmodified 1188.6754 0.67542497 1798 Q15393;Q15393-2 SF3B3 Splicing factor 3B subunit 3 yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 64.396 64.828 2;3 8.0004E-09 19670 20211116_3447_TMUAki_TMT10x_S_F8 143.03 114.34 4369600 7315000 29634 8079300 4407800 4313500 4337600 5170600 4913400 5725800 5904800 4068700 6828500 390420 8131900 4226400 4645800 4421300 5230500 5008500 5569300 5665400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4369600 7315000 29634 8079300 4407800 4313500 4337600 5170600 4913400 5725800 5904800 4068700 6828500 390420 8131900 4226400 4645800 4421300 5230500 5008500 5569300 5665400 1 1 1 1 1 1 1 1 1 1 1 660740000 0 660740000 9721 1798 9037 52051;52052;52053 62943;62944;62945 62945 3 IVILPDYLEIAR Unmodified 1413.8232 0.82315184 1036 P45974;P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 0 By MS/MS By MS/MS 6.67 1.15 2 2 2 3 5 4 80.568 80.566 2 2.3267E-19 27980 20211116_3446_TMUAki_TMT10x_S_F7 226.09 132.67 67172000 109520000 600250 102180000 68674000 92883000 78964000 54940000 56213000 65305000 76163000 62544000 102170000 5691300 104620000 66113000 94344000 78854000 58085000 58891000 63353000 72854000 10 10 4 10 10 10 10 10 10 10 10 39703000 62821000 544120 59002000 34166000 65460000 40399000 32433000 33633000 38269000 45308000 36969000 58605000 3448400 60558000 32932000 65546000 40443000 34817000 34926000 37135000 43345000 6 6 3 6 6 6 6 6 6 6 6 27469000 46698000 56128 43181000 34508000 27423000 38565000 22507000 22580000 27037000 30856000 25575000 43561000 2242900 44064000 33181000 28798000 38411000 23268000 23965000 26219000 29509000 4 4 1 4 4 4 4 4 4 4 4 13434000000 6240400000 7193100000 9722 1036 9038 52054;52055;52056;52057;52058;52059;52060;52061;52062 62946;62947;62948;62949;62950;62951;62952;62953;62954;62955;62956 62955 11 IVITDCGQLS Unmodified 1104.5485 0.5485099 871 P30405 PPIF Peptidyl-prolyl cis-trans isomerase F, mitochondrial yes yes 0 0 0 0 By MS/MS 4 0 1 1 62.251 62.363 2 0.0031741 19444 20211116_3431_TMUAki_TMT10x_P_F4 77.058 61.363 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9723 871 9039 52063 62957 62957 1 IVITGDGDIDHDQALAQAIR Unmodified 2120.0862 0.086195831 220 O43491;O43491-4;O43491-2;O43491-3 EPB41L2 Band 4.1-like protein 2 yes no 0 0 0 0 By MS/MS By matching 4 0 2 1 1 61.052 61.048 3 7.6802E-07 18931 20211116_3431_TMUAki_TMT10x_P_F4 91.637 76.444 2676400 4302400 0 4109600 3381700 5399700 3493200 3258400 2844300 3315200 3484200 2491900 4013900 217210 4225400 3244300 5373200 3517400 3422700 2944700 3235500 3341200 1 1 0 1 1 1 1 1 1 1 1 2676400 4302400 0 4109600 3381700 5399700 3493200 3258400 2844300 3315200 3484200 2491900 4013900 217210 4225400 3244300 5373200 3517400 3422700 2944700 3235500 3341200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 841180000 577420000 263760000 9724 220 9040 52064;52065 62958 62958 1 IVKPNGEKPDEFESGISQALLELEMNSDLK Oxidation (M) 3345.665 0.6650028 1332 P62081 RPS7 40S ribosomal protein S7 yes yes 0 0 1 2 By MS/MS By MS/MS 5.67 1.91 1 1 3 3 3 3 4 13 5 76.636 76.637 4;5 2.1368E-20 25289 20211116_3434_TMUAki_TMT10x_P_F6 131.94 116.49 78269000 128630000 542700 105760000 73280000 129680000 87964000 84358000 88230000 89481000 95481000 72876000 119940000 5859700 109860000 70633000 129610000 88467000 88210000 90005000 87181000 91882000 18 18 8 18 18 18 18 18 18 18 18 51890000 83360000 139340 66709000 40481000 97483000 51355000 53222000 56384000 58342000 61205000 48312000 77721000 3238000 69691000 39066000 96417000 51679000 56499000 57312000 56769000 58893000 13 13 5 13 13 13 13 13 13 13 13 26379000 45267000 403350 39047000 32798000 32195000 36609000 31136000 31846000 31140000 34276000 24564000 42216000 2621600 40171000 31567000 33197000 36788000 31711000 32693000 30413000 32990000 5 5 3 5 5 5 5 5 5 5 5 46965000000 32672000000 14294000000 9725 1332 9041 52066;52067;52068;52069;52070;52071;52072;52073;52074;52075;52076;52077;52078;52079;52080;52081;52082;52083 62959;62960;62961;62962;62963;62964;62965;62966;62967;62968;62969;62970;62971;62972;62973;62974;62975;62976 62962 1787 18 IVKPNGEKPDEFESGISQALLELEMNSDLK Unmodified 3329.6701 0.67008818 1332 P62081 RPS7 40S ribosomal protein S7 yes yes 0 0 0 2 By MS/MS By MS/MS 5.75 0.433 1 3 3 1 78.995 78.986 4;5 5.2671E-46 25315 20211116_3434_TMUAki_TMT10x_P_F6 197.08 187.02 23222000 36221000 362460 35989000 19365000 26381000 25769000 10061000 10108000 11703000 21233000 21624000 33797000 2202600 36588000 18751000 27101000 25319000 11102000 11363000 11362000 20138000 5 5 4 5 5 5 5 5 5 5 5 18931000 29392000 362460 29467000 14403000 21355000 20220000 6951700 7155900 8210000 16192000 17630000 27426000 1843900 29935000 13978000 21932000 19801000 7832600 8172200 7966400 15340000 4 4 4 4 4 4 4 4 4 4 4 4290200 6829200 0 6521700 4962300 5025900 5548800 3109700 2951900 3493100 5041000 3994600 6371200 358670 6652600 4772400 5169300 5517400 3269900 3190900 3395700 4798200 1 1 0 1 1 1 1 1 1 1 1 6408000000 4468600000 1939400000 9726 1332 9041 52084;52085;52086;52087 62977;62978;62979;62980 62977 4 IVLAAAGGVSHDELLDLAK Unmodified 1891.0415 0.041477469 335 O75439 PMPCB Mitochondrial-processing peptidase subunit beta yes yes 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 74.01 73.99 3 5.3876E-41 23306 20211116_3434_TMUAki_TMT10x_P_F6 205.95 178.3 18740000 30523000 297940 27984000 21616000 28034000 21609000 19139000 18005000 18699000 22047000 17451000 28472000 1871600 28729000 20744000 28356000 21808000 19895000 18618000 18281000 21143000 6 6 6 6 6 6 6 6 6 6 6 9451000 14501000 247960 13703000 9202900 17317000 10317000 9132900 9254300 9407600 10953000 8801700 13528000 1011200 14090000 8867200 17234000 10374000 9707000 9521400 9176600 10514000 3 3 3 3 3 3 3 3 3 3 3 9289200 16023000 49981 14281000 12413000 10717000 11292000 10006000 8750700 9291500 11094000 8649500 14944000 860470 14639000 11877000 11122000 11434000 10188000 9096700 9104000 10629000 3 3 3 3 3 3 3 3 3 3 3 2530900000 1240900000 1290000000 9727 335 9042 52088;52089;52090;52091;52092;52093 62981;62982;62983;62984;62985;62986;62987;62988 62982 8 IVLANDPDADRLAVAEK Unmodified 1808.9632 0.96322715 2466 Q96G03;Q96G03-2 PGM2 Phosphoglucomutase-2 yes no 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 56.459 56.511 3 1.4799E-15 17028 20211116_3431_TMUAki_TMT10x_P_F4 152.37 129.8 8626700 14509000 24577 16313000 12140000 13895000 9051100 12347000 13375000 11248000 12710000 8032400 13546000 767870 16479000 11563000 14270000 9476300 12599000 13394000 11031000 12282000 3 3 2 3 3 3 3 3 3 3 3 3726500 5875700 23282 6930800 7588200 9414900 5121900 5485300 5941500 4711500 5418000 3469900 5486600 384730 7033200 7215300 9349700 5349700 5752200 5990000 4633400 5242800 1 1 1 1 1 1 1 1 1 1 1 4900200 8633800 1294.8 9382500 4551700 4480200 3929300 6862000 7433900 6536700 7292100 4562500 8059000 383130 9445500 4347500 4920100 4126700 6846900 7404400 6397500 7038800 2 2 1 2 2 2 2 2 2 2 2 1487600000 888970000 598650000 9728 2466 9043 52094;52095 62989;62990;62991 62989 3 IVLDNSVFSEHR Unmodified 1414.7205 0.72047768 1471 Q00610;Q00610-2;P53675;P53675-2 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 0 By MS/MS By MS/MS 5.25 0.829 1 1 2 2 2 52.651 52.775 3 4.9402E-08 15742 20211116_3433_TMUAki_TMT10x_P_F5 114.02 75.541 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9729 1471 9044 52096;52097;52098;52099 62992;62993;62994;62995 62992 4 IVLEDGTLHVTEGSGR Unmodified 1681.8635 0.8635131 1852 Q16555;Q16555-2 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 3 1.41 2 2 2 2 2 5 5 50.706 50.658 3 3.924E-43 14531 20211116_3440_TMUAki_TMT10x_S_F2 231.17 213.57 48713000 82136000 714940 85628000 68428000 75509000 55023000 50675000 49240000 50649000 59056000 45359000 76654000 4576500 86957000 65292000 76990000 56334000 52775000 50694000 49467000 56665000 16 16 8 16 16 16 16 16 16 16 16 23742000 40451000 487910 40790000 44323000 54833000 34681000 24275000 23128000 24493000 28181000 22108000 37747000 2519900 41798000 42274000 54307000 35325000 26230000 24214000 23912000 27029000 7 7 5 7 7 7 7 7 7 7 7 24971000 41684000 227030 44839000 24105000 20676000 20342000 26400000 26111000 26156000 30875000 23251000 38908000 2056600 45159000 23018000 22682000 21010000 26546000 26480000 25555000 29637000 9 9 3 9 9 9 9 9 9 9 9 7719100000 4357300000 3361800000 9730 1852 9045 52100;52101;52102;52103;52104;52105;52106;52107;52108;52109 62996;62997;62998;62999;63000;63001;63002;63003;63004;63005;63006;63007;63008;63009;63010;63011 63005 16 IVLLDSSLEYK Unmodified 1278.7071 0.70711903 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 By MS/MS By MS/MS 5.37 1.69 1 2 3 4 3 4 2 11 8 74.6 74.61 2;3 1.5971E-30 24953 20211116_3442_TMUAki_TMT10x_S_F4 275 178.75 203300000 331700000 1771700 332590000 241260000 304520000 229750000 199300000 196700000 209120000 252560000 189290000 309520000 15898000 338820000 231090000 309590000 232620000 208240000 203540000 203830000 241900000 23 23 14 23 23 23 23 23 23 23 23 114620000 181180000 1322100 177710000 121370000 208910000 123340000 112690000 109810000 114620000 137050000 106720000 169050000 10133000 182010000 116460000 208740000 124580000 119490000 113270000 111860000 131360000 14 14 9 14 14 14 14 14 14 14 14 88677000 150520000 449600 154880000 119890000 95603000 106410000 86615000 86894000 94499000 115510000 82569000 140470000 5765100 156810000 114620000 100850000 108040000 88754000 90269000 91968000 110540000 9 9 5 9 9 9 9 9 9 9 9 24239000000 12053000000 12187000000 9731 1094 9046 52110;52111;52112;52113;52114;52115;52116;52117;52118;52119;52120;52121;52122;52123;52124;52125;52126;52127;52128 63012;63013;63014;63015;63016;63017;63018;63019;63020;63021;63022;63023;63024;63025;63026;63027;63028;63029;63030;63031;63032;63033;63034;63035;63036;63037;63038 63029 27 IVLLDSSLEYKK Unmodified 1406.8021 0.80208205 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 1 By MS/MS 7 0 1 1 63.902 64.545 3 0.00044786 21247 20211116_3435_TMUAki_TMT10x_P_F7 80.905 56.523 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9732 1094 9047 52129 63039 63039 1 IVLQNGAHEVFNHR Unmodified 1632.8485 0.84847216 1547 Q08257;Q08257-3;Q08257-2 CRYZ Quinone oxidoreductase yes no 0 0 0 0 By MS/MS 8 0 1 1 24.159 24.258 3 0.047731 4260 20211116_3436_TMUAki_TMT10x_P_F8 42.958 26.384 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9733 1547 9048 52130 63040 63040 1 IVLRLECVEPNCR Unmodified 1656.844 0.84398041 1450 Q969Q0;P83881 RPL36AL;RPL36A 60S ribosomal protein L36a-like;60S ribosomal protein L36a yes no 0 0 0 1 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 51.964 52.2 3 9.7651E-20 14532 20211116_3447_TMUAki_TMT10x_S_F8 195.87 169.86 27081000 43494000 399640 46644000 42384000 42861000 27784000 38403000 32431000 31263000 36746000 25218000 40596000 2815800 47305000 40296000 43797000 29090000 39057000 32943000 30827000 35314000 9 9 8 9 9 9 9 9 9 9 9 13862000 21275000 286780 22833000 25250000 31583000 17402000 19297000 16551000 15886000 18131000 12909000 19858000 1576000 23315000 24031000 31359000 18036000 20137000 16931000 15656000 17441000 5 5 5 5 5 5 5 5 5 5 5 13219000 22219000 112860 23810000 17135000 11277000 10382000 19107000 15881000 15377000 18616000 12309000 20738000 1239800 23990000 16265000 12438000 11054000 18920000 16012000 15171000 17873000 4 4 3 4 4 4 4 4 4 4 4 2890400000 1523300000 1367000000 9734 1450 9049 52131;52132;52133;52134;52135;52136 63041;63042;63043;63044;63045;63046;63047;63048;63049 63049 9 IVLTNPVCTEVGEK Unmodified 1557.8072 0.80724378 993 P41091;Q2VIR3 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 0 0 0 0 By MS/MS By MS/MS 5.67 0.667 4 4 1 4 5 61.265 61.335 2;3 2.0706E-37 18520 20211116_3445_TMUAki_TMT10x_S_F6 251.3 223.97 23436000 41015000 139810 44489000 34810000 42664000 28203000 30310000 29021000 28519000 34305000 21822000 38285000 2170000 45114000 33215000 43298000 28978000 31387000 29676000 27927000 32929000 7 7 4 7 7 7 7 7 7 7 7 12680000 22066000 28582 24695000 24483000 33326000 19519000 16410000 15810000 16230000 19305000 11806000 20600000 1182100 25136000 23349000 33038000 19944000 17533000 16370000 15859000 18515000 4 4 2 4 4 4 4 4 4 4 4 10756000 18949000 111230 19795000 10326000 9337400 8683700 13900000 13211000 12289000 15000000 10016000 17685000 987900 19978000 9866700 10260000 9034300 13854000 13305000 12068000 14414000 3 3 2 3 3 3 3 3 3 3 3 4844600000 2663300000 2181300000 9735 993 9050 52137;52138;52139;52140;52141;52142;52143;52144;52145 63050;63051;63052;63053;63054;63055;63056;63057;63058 63057 9 IVLVDDRECPVR Unmodified 1469.766 0.76604767 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 42.997 43.003 3 4.2812E-09 11936 20211116_3442_TMUAki_TMT10x_S_F4 150.14 134.2 10072000 15466000 54611 16952000 18911000 16429000 10838000 12224000 13777000 10830000 13415000 9377600 14437000 948600 17181000 17929000 16675000 11506000 12599000 13874000 10635000 12952000 5 5 2 5 5 5 5 5 5 5 5 7253000 10899000 49031 11828000 15623000 14098000 8347600 8082800 9419600 7397200 9372000 6753200 10173000 703780 12035000 14796000 14087000 8880900 8501100 9534200 7252800 9042300 3 3 1 3 3 3 3 3 3 3 3 2818600 4567300 5579.2 5123200 3287900 2331300 2490300 4141500 4357500 3432800 4042800 2624500 4263900 244820 5145500 3132900 2587900 2625600 4098300 4340100 3381900 3909600 2 2 1 2 2 2 2 2 2 2 2 413690000 216200000 197480000 9736 157 9051 52146;52147;52148;52149 63059;63060;63061;63062;63063 63063 5 IVLVDDRECPVRR Unmodified 1625.8672 0.86715869 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 2 By MS/MS By MS/MS 4.8 0.4 1 4 3 2 36.148 36.185 3;4 4.3385E-25 7896 20211116_3444_TMUAki_TMT10x_S_F5 218.85 173.86 8045100 13549000 20581 16846000 19060000 15391000 11429000 8757500 8701900 7949400 11003000 7490400 12655000 772380 16931000 18080000 15620000 11907000 9214600 9053700 7797100 10543000 7 7 3 7 7 7 7 7 7 7 7 6829500 11437000 7896.4 14279000 17813000 14355000 10328000 7100800 6985500 6477100 9078500 6358400 10683000 659380 14367000 16887000 14457000 10764000 7567100 7327100 6351500 8692900 5 5 2 5 5 5 5 5 5 5 5 1215600 2111100 12685 2567200 1247100 1035800 1101000 1656700 1716400 1472400 1924900 1131900 1971600 113000 2563800 1192800 1163600 1143500 1647500 1726600 1445600 1850400 2 2 1 2 2 2 2 2 2 2 2 1649900000 1364900000 285080000 9737 157 9052 52150;52151;52152;52153;52154 63064;63065;63066;63067;63068;63069;63070;63071 63069 8 IVLVDDSIVR Unmodified 1127.655 0.65502388 1524 Q06203 PPAT Amidophosphoribosyltransferase yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.957 1 2 2 1 4 2 62.465 62.258 2 3.2275E-14 19377 20211116_3431_TMUAki_TMT10x_P_F4 230.56 173.39 26998000 43401000 317700 42219000 31945000 46333000 31430000 35038000 30347000 32134000 35793000 25139000 40493000 2501100 43216000 30630000 46694000 31874000 36108000 31114000 31503000 34360000 6 6 3 6 6 6 6 6 6 6 6 17611000 27691000 142680 27482000 22201000 37004000 22564000 22112000 19460000 20397000 22332000 16398000 25838000 1580200 28193000 21300000 36776000 22772000 23182000 20035000 19992000 21454000 4 4 2 4 4 4 4 4 4 4 4 9387500 15710000 175020 14738000 9744200 9328800 8866300 12927000 10887000 11737000 13461000 8741800 14655000 920910 15023000 9330100 9918100 9102000 12926000 11079000 11512000 12906000 2 2 1 2 2 2 2 2 2 2 2 1916900000 1172800000 744060000 9738 1524 9053 52155;52156;52157;52158;52159;52160 63072;63073;63074;63075;63076;63077;63078 63075 7 IVNDDQSFYADIYMEDGLIK Oxidation (M) 2364.0831 0.083143867 1852;1692 Q14195-2;Q14195;Q16555 DPYSL3;DPYSL2 Dihydropyrimidinase-related protein 3;Dihydropyrimidinase-related protein 2 no no 0 0 1 0 By MS/MS By MS/MS 2.14 0.99 4 6 2 2 8 6 62.935 62.88 2;3 2.9255E-22 27692 20211116_3439_TMUAki_TMT10x_S_F1 152.74 138.39 29375000 53345000 29390 41229000 31350000 65229000 40805000 42735000 45258000 46310000 41203000 27349000 49731000 1693600 43275000 30280000 64465000 41033000 44692000 45703000 45081000 39872000 10 10 2 10 10 10 10 10 10 10 10 22074000 39597000 28781 31348000 21857000 54911000 29311000 32678000 34927000 35310000 31252000 20553000 36918000 1239900 32915000 21139000 53986000 29515000 34426000 35156000 34378000 30261000 7 7 1 7 7 7 7 7 7 7 7 7301200 13748000 608.86 9881300 9493000 10319000 11494000 10057000 10330000 10999000 9951400 6796700 12814000 453660 10360000 9140800 10479000 11518000 10266000 10547000 10704000 9611500 3 3 1 3 3 3 3 3 3 3 3 11388000000 8675600000 2712500000 9739 1692;1852 9054 52161;52162;52163;52164;52165;52166;52167;52168;52169;52170;52171;52172;52173;52174 63079;63080;63081;63082;63083;63084;63085;63086;63087;63088;63089;63090 63087 2267 12 IVNDDQSFYADIYMEDGLIK Unmodified 2348.0882 0.088229245 1852;1692 Q14195-2;Q14195;Q16555 DPYSL3;DPYSL2 Dihydropyrimidinase-related protein 3;Dihydropyrimidinase-related protein 2 no no 0 0 0 0 By MS/MS 1 0 1 1 79.748 79.712 3 0.10637 28097 20211116_3439_TMUAki_TMT10x_S_F1 25.496 10.726 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9740 1692;1852 9054 52175 63091 63091 1 IVPGQFLAVDPK Unmodified 1282.7285 0.72852317 1798 Q15393;Q15393-2 SF3B3 Splicing factor 3B subunit 3 yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.667 1 4 4 5 4 70.776 70.888 2;3 1.1717E-07 22107 20211116_3447_TMUAki_TMT10x_S_F8 138.25 114.82 48248000 81461000 560040 79730000 57946000 78952000 57344000 57437000 55583000 57380000 61576000 44927000 76005000 4466200 81448000 55568000 79996000 58143000 59482000 56836000 56042000 59215000 12 12 8 12 12 12 12 12 12 12 12 28130000 46300000 410240 46600000 33383000 57864000 35437000 33393000 32581000 32936000 35266000 26194000 43204000 2682100 47687000 32079000 57703000 35750000 35173000 33366000 32186000 33937000 7 7 5 7 7 7 7 7 7 7 7 20118000 35161000 149800 33130000 24563000 21088000 21907000 24044000 23002000 24444000 26310000 18732000 32801000 1784100 33761000 23489000 22293000 22394000 24309000 23470000 23857000 25278000 5 5 3 5 5 5 5 5 5 5 5 7642700000 4313200000 3329500000 9741 1798 9055 52176;52177;52178;52179;52180;52181;52182;52183;52184 63092;63093;63094;63095;63096;63097;63098;63099;63100;63101;63102;63103 63101 12 IVPHLLR Unmodified 846.54396 0.54395729 1953 Q5VYK3 ECM29 Proteasome-associated protein ECM29 homolog yes yes 0 0 0 0 By MS/MS 2 0 1 1 41.929 41.648 3 0.0043658 12200 20211116_3429_TMUAki_TMT10x_P_F2 92.692 53.15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9742 1953 9056 52185 63104 63104 1 IVPNVLLEQGK Unmodified 1208.7129 0.71287311 330 O75390 CS Citrate synthase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 4 2 3 3 66.004 66.393 2;3 2.2615E-17 20249 20211116_3447_TMUAki_TMT10x_S_F8 190.88 142.64 19613000 31700000 131790 32925000 23840000 27654000 20516000 21823000 21396000 19711000 24940000 18262000 29584000 1791100 33424000 22783000 28366000 21011000 22419000 21854000 19338000 23949000 6 6 4 6 6 6 6 6 6 6 6 11485000 17815000 81242 18358000 15538000 20226000 13693000 12396000 12126000 11544000 14592000 10694000 16625000 1067700 18717000 14856000 20313000 13937000 12973000 12492000 11309000 14000000 4 4 2 4 4 4 4 4 4 4 4 8128200 13886000 50547 14568000 8302100 7428100 6823300 9427000 9270000 8167300 10348000 7568500 12959000 723420 14706000 7926400 8052600 7074200 9446100 9361800 8028500 9948800 2 2 2 2 2 2 2 2 2 2 2 3395700000 1793600000 1602100000 9743 330 9057 52186;52187;52188;52189;52190;52191 63105;63106;63107;63108;63109;63110;63111;63112 63112 8 IVQAEGEAEAAK Unmodified 1214.6143 0.61428128 2593 Q99623 PHB2 Prohibitin-2 yes yes 0 0 0 0 By MS/MS By MS/MS 2.11 0.737 2 4 3 4 5 42.181 42.024 2;3 6.7911E-20 11017 20211116_3440_TMUAki_TMT10x_S_F2 234.65 180.49 11613000 19412000 50231 18959000 17241000 17199000 13918000 13507000 14047000 12164000 16209000 10813000 18112000 1059100 19347000 16449000 17547000 14296000 13879000 14361000 11936000 15570000 9 9 5 9 9 9 9 9 9 9 9 6740300 10790000 8727.5 10273000 12333000 13137000 8754000 7503400 7900900 7026000 9178500 6275900 10067000 635550 10560000 11735000 13080000 9040300 7899000 8120500 6881700 8814600 4 4 2 4 4 4 4 4 4 4 4 4872600 8621500 41504 8685100 4908400 4062000 5164500 6003700 6146100 5138400 7030800 4537100 8045000 423550 8786600 4714100 4466900 5255500 5980300 6241000 5054100 6755000 5 5 3 5 5 5 5 5 5 5 5 597090000 287860000 309230000 9744 2593 9058 52192;52193;52194;52195;52196;52197;52198;52199;52200 63113;63114;63115;63116;63117;63118;63119;63120;63121;63122 63119 10 IVQISGNSMPR Oxidation (M) 1216.6234 0.62340617 2986 Q9NWH9;Q9NWH9-3 SLTM SAFB-like transcription modulator yes no 0 0 1 0 By MS/MS By MS/MS 8 0 2 1 1 36.368 36.767 2 0.0071931 8105 20211116_3447_TMUAki_TMT10x_S_F8 70.496 45.676 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9745 2986 9059 52201;52202 63123;63124 63124 3063 2 IVQMTEAEVR Oxidation (M) 1190.5965 0.59652272 1334 P62140 PPP1CB Serine/threonine-protein phosphatase PP1-beta catalytic subunit yes yes 0 0 1 0 By MS/MS 2 0 1 1 36.353 36.452 2 0.050242 8749 20211116_3440_TMUAki_TMT10x_S_F2 58.699 28.514 123790 210880 3495.8 245670 137170 95723 125970 138580 134700 124640 150420 115290 196910 13708 245930 131450 107730 128630 138320 137210 122310 144620 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 123790 210880 3495.8 245670 137170 95723 125970 138580 134700 124640 150420 115290 196910 13708 245930 131450 107730 128630 138320 137210 122310 144620 1 1 1 1 1 1 1 1 1 1 1 11156000 0 11156000 9746 1334 9060 52203 63125 63125 1789 1 IVSAQSLAEDDVE Unmodified 1374.6515 0.65145464 1796 Q15388 TOMM20 Mitochondrial import receptor subunit TOM20 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 63.235 63.09 2 1.5295E-08 19644 20211116_3440_TMUAki_TMT10x_S_F2 121.83 115.38 4142900 6585700 0 7937900 5398300 7575700 5419400 4829800 5606600 5063900 5841000 3856300 6150200 208980 7997100 5166800 7678300 5501800 5056200 5703900 4936000 5627400 1 1 0 1 1 1 1 1 1 1 1 4142900 6585700 0 7937900 5398300 7575700 5419400 4829800 5606600 5063900 5841000 3856300 6150200 208980 7997100 5166800 7678300 5501800 5056200 5703900 4936000 5627400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1603600000 1603600000 0 9747 1796 9061 52204;52205;52206 63126;63127 63127 2 IVSGCPLPEACELYYVNR Unmodified 2139.0129 0.012896232 2769 Q9H0A0;Q9H0A0-2 NAT10 N-acetyltransferase 10 yes no 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 70.252 70.163 3 2.7966E-06 22112 20211116_3445_TMUAki_TMT10x_S_F6 95.662 89.758 1839600 2975800 20519 2952300 2041400 1951600 2214600 1816600 1990100 2090100 2286600 1713000 2776700 174470 2998500 1963000 2046900 2230400 1862000 2044900 2030000 2196600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1839600 2975800 20519 2952300 2041400 1951600 2214600 1816600 1990100 2090100 2286600 1713000 2776700 174470 2998500 1963000 2046900 2230400 1862000 2044900 2030000 2196600 1 1 1 1 1 1 1 1 1 1 1 358450000 0 358450000 9748 2769 9062 52207;52208;52209 63128;63129;63130 63130 3 IVSITER Unmodified 816.47052 0.47051757 2513 Q96KR1 ZFR Zinc finger RNA-binding protein yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 38.848 39.029 2 0.021431 10360 20211116_3442_TMUAki_TMT10x_S_F4 86.472 25.673 532490 929170 0 1033700 509140 435970 595010 502170 495860 438810 732580 495800 867410 43243 1038200 490310 482500 595980 505330 517190 431180 699360 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 532490 929170 0 1033700 509140 435970 595010 502170 495860 438810 732580 495800 867410 43243 1038200 490310 482500 595980 505330 517190 431180 699360 1 1 0 1 1 1 1 1 1 1 1 25011000 0 25011000 9749 2513 9063 52210;52211 63131;63132 63132 2 IVSLFAEHNDLQYAAPGGLIGVGTK Unmodified 2569.354 0.35403784 993 P41091;Q2VIR3;Q2VIR3-2 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 0 0 0 0 By MS/MS By MS/MS 3.29 3.01 3 2 2 4 3 78.091 78.065 3;4 5.2981E-23 25618 20211116_3436_TMUAki_TMT10x_P_F8 152.96 144.57 26643000 47107000 301600 40359000 28509000 44158000 32677000 24587000 22398000 28729000 31016000 24809000 43931000 2469100 41706000 27456000 44311000 32609000 26110000 23542000 27887000 29653000 6 6 4 6 6 6 6 6 6 6 6 14000000 24400000 110450 20653000 13096000 28738000 15773000 12424000 11607000 15254000 15937000 13036000 22753000 1210000 21455000 12628000 28411000 15730000 13540000 12144000 14781000 15240000 3 3 2 3 3 3 3 3 3 3 3 12642000 22708000 191150 19706000 15413000 15421000 16903000 12163000 10791000 13475000 15079000 11773000 21178000 1259100 20251000 14828000 15901000 16879000 12570000 11397000 13106000 14413000 3 3 2 3 3 3 3 3 3 3 3 9598600000 5491700000 4106900000 9750 993 9064 52212;52213;52214;52215;52216;52217;52218 63133;63134;63135;63136;63137;63138 63135 6 IVSQLLTLMDGLK Oxidation (M) 1445.8164 0.8163519 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 1 0 By MS/MS By MS/MS 3.92 3.1 4 4 1 4 7 6 79.234 79.22 2;3 1.4843E-08 25982 20211116_3428_TMUAki_TMT10x_P_F1 122.39 87.168 39240000 66795000 279100 60136000 44310000 76972000 48172000 49639000 45497000 49406000 51707000 36537000 62302000 3435600 62071000 42590000 76761000 48578000 51842000 46623000 48262000 49688000 12 12 6 12 12 12 12 12 12 12 12 28108000 46382000 149350 40804000 29621000 63759000 32693000 36159000 32950000 36140000 36233000 26172000 43259000 2376900 42364000 28481000 62918000 33009000 38156000 33626000 35297000 34851000 8 8 4 8 8 8 8 8 8 8 8 11131000 20413000 129760 19332000 14688000 13212000 15480000 13481000 12547000 13266000 15474000 10365000 19044000 1058600 19706000 14109000 13843000 15569000 13686000 12997000 12965000 14837000 4 4 2 4 4 4 4 4 4 4 4 6796900000 4662100000 2134800000 9751 1235 9065 52219;52220;52221;52222;52223;52224;52225;52226;52227;52228;52229;52230;52231 63139;63140;63141;63142;63143;63144;63145;63146;63147;63148;63149;63150;63151;63152 63139 1671 14 IVSQLLTLMDGLK Unmodified 1429.8214 0.82143728 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 By MS/MS 5 0 1 1 83.335 83.343 3 0.012473 27172 20211116_3444_TMUAki_TMT10x_S_F5 59.607 36.371 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9752 1235 9065 52232 63153 63153 1 IVSRPEELREDDVGTGAGLLEIK Unmodified 2495.3231 0.32313164 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 2 By MS/MS By MS/MS 4.11 1.15 2 3 6 5 2 9 9 60.568 60.539 3;4;5 5.9919E-84 18678 20211116_3431_TMUAki_TMT10x_P_F4 281.24 246.84 346380000 542600000 2245500 606840000 395810000 491430000 360250000 350460000 352200000 358580000 429780000 322500000 506540000 26903000 612810000 378560000 504590000 367020000 363680000 361410000 349870000 412190000 26 26 18 26 26 26 26 26 26 26 26 181830000 280840000 1169000 320710000 208630000 339540000 203030000 184210000 191260000 193110000 222020000 169310000 262200000 15719000 324640000 199920000 341250000 205870000 195390000 196180000 188230000 213220000 11 11 8 11 11 11 11 11 11 11 11 164550000 261760000 1076500 286130000 187180000 151890000 157210000 166250000 160940000 165470000 207760000 153200000 244340000 11184000 288170000 178640000 163340000 161150000 168290000 165230000 161640000 198970000 15 15 10 15 15 15 15 15 15 15 15 77910000000 37844000000 40066000000 9753 1094 9066 52233;52234;52235;52236;52237;52238;52239;52240;52241;52242;52243;52244;52245;52246;52247;52248;52249;52250 63154;63155;63156;63157;63158;63159;63160;63161;63162;63163;63164;63165;63166;63167;63168;63169;63170;63171;63172;63173;63174;63175;63176;63177;63178;63179;63180 63161 27 IVSVGDDQEIHIYDCPI Unmodified 1971.9248 0.92479273 2758 Q9GZS3 WDR61 WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed yes yes 0 0 0 0 By MS/MS 3 0 1 1 75.452 75.266 3 0.048029 27372 20211116_3441_TMUAki_TMT10x_S_F3 36.127 20.027 1678400 2962300 47747 2692400 2095100 2092700 2169300 1966800 1920300 1993500 2364700 1563100 2763100 189480 2756800 2013600 2166000 2188900 2006900 1980300 1945900 2267300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1678400 2962300 47747 2692400 2095100 2092700 2169300 1966800 1920300 1993500 2364700 1563100 2763100 189480 2756800 2013600 2166000 2188900 2006900 1980300 1945900 2267300 1 1 1 1 1 1 1 1 1 1 1 202470000 0 202470000 9754 2758 9067 52251 63181 63181 1 IVSWLEYESSFSNEEAQK Unmodified 2144.9902 0.99022976 1497 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 0 0 0 0 By MS/MS 2 0 1 1 79.161 79.131 3 2.5413E-13 27405 20211116_3429_TMUAki_TMT10x_P_F2 140.22 124.96 8976100 12869000 0 13273000 8052900 11007000 10125000 4614100 3872200 5502100 8874400 8356700 12009000 619810 13478000 7766300 11209000 9968700 5040500 4390500 5337000 8405900 2 2 0 2 2 2 2 2 2 2 2 8976100 12869000 0 13273000 8052900 11007000 10125000 4614100 3872200 5502100 8874400 8356700 12009000 619810 13478000 7766300 11209000 9968700 5040500 4390500 5337000 8405900 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 577650000 577650000 0 9755 1497 9068 52252 63182;63183 63182 2 IVSWSQVGVEPSIMGIGPIPAIK Oxidation (M) 2393.3029 0.30285389 2706 Q9BWD1;Q9BWD1-2 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes no 0 0 1 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 79.707 79.661 3;4 1.1742E-11 29087 20211116_3441_TMUAki_TMT10x_S_F3 117.37 102.28 7893000 12499000 42093 11267000 8671500 11655000 9549400 5836800 5287100 7276700 9346800 7348200 11659000 545310 11587000 8328900 11718000 9508500 6271200 5709300 7047500 8890900 4 4 2 4 4 4 4 4 4 4 4 5516700 8478300 42093 7723500 5337600 9524400 6289800 4396800 3947200 5128700 6398700 5136200 7908400 403700 7959400 5138600 9476500 6257700 4751100 4205100 4978800 6096700 3 3 2 3 3 3 3 3 3 3 3 2376300 4020900 0 3543600 3333800 2130400 3259600 1439900 1339900 2148000 2948200 2212000 3750200 141610 3627700 3190300 2242000 3250900 1520100 1504200 2068700 2794200 1 1 0 1 1 1 1 1 1 1 1 3211500000 1746000000 1465500000 9756 2706 9069 52253;52254;52255 63184;63185;63186;63187 63187 2906 4 IVSWSQVGVEPSIMGIGPIPAIK Unmodified 2377.3079 0.30793927 2706 Q9BWD1;Q9BWD1-2 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 3 3 3 3 80.84 80.809 3;4 8.8697E-28 27414 20211116_3442_TMUAki_TMT10x_S_F4 162.32 144.41 10643000 15791000 99272 18727000 11317000 9287100 12743000 4015100 3199200 4759600 10408000 9910500 14745000 968330 18756000 10892000 9924800 12556000 4370600 3928000 4617800 9817100 5 5 2 5 5 5 5 5 5 5 5 5578900 7579100 0 9086600 5110400 5228000 6017700 2066600 1362800 2289200 4964400 5194400 7077800 443530 9105700 4922100 5492900 5912500 2267400 1718000 2226600 4677500 2 2 0 2 2 2 2 2 2 2 2 5064300 8211600 99272 9640200 6206400 4059000 6725500 1948400 1836300 2470400 5443600 4716100 7667600 524800 9650200 5969800 4431900 6643400 2103200 2210100 2391200 5139600 3 3 2 3 3 3 3 3 3 3 3 4453800000 2295700000 2158100000 9757 2706 9069 52256;52257;52258;52259;52260;52261 63188;63189;63190;63191;63192 63191 5 IVTDRETGSSK Unmodified 1191.6095 0.60953025 729 P19338 NCL Nucleolin yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 30.45 30.299 3 1.2557E-05 9179 20211116_3441_TMUAki_TMT10x_S_F3 108.68 76.676 1512000 2485100 11299 2192800 2154900 2495200 1715200 1333700 1547300 1327500 1796600 1407900 2317800 144420 2262200 2055800 2497200 1757600 1414400 1590300 1296800 1725400 3 3 2 3 3 3 3 3 3 3 3 963050 1552500 4260.6 1425000 1555100 1963600 1079000 907520 1047300 869010 1144900 896720 1448200 91639 1470800 1479400 1943500 1118400 974850 1070300 850310 1101400 2 2 1 2 2 2 2 2 2 2 2 548930 932600 7038.6 767830 599810 531580 636250 426160 500000 458490 651760 511160 869600 52782 791420 576470 553750 639250 439580 520010 446450 624030 1 1 1 1 1 1 1 1 1 1 1 263410000 215500000 47910000 9758 729 9070 52262;52263;52264 63193;63194;63195 63195 3 IVVAMAK Oxidation (M) 746.43605 0.43604632 865 P30084 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 0 0 1 0 By MS/MS 8 0 1 1 38.622 38.877 2 0.096721 9586 20211116_3436_TMUAki_TMT10x_P_F8 64.276 32.697 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9759 865 9071 52265 63196 63196 1031 1 IVVEHIIMKPACPLFVR Oxidation (M) 2037.1267 0.1267442 1263 P57088 TMEM33 Transmembrane protein 33 yes yes 0 0 1 1 By MS/MS 4 0 1 1 60.739 60.613 4 2.2475E-08 19221 20211116_3442_TMUAki_TMT10x_S_F4 119.54 104.03 4386100 8040600 44587 6997900 4874900 5668100 5208600 6535200 5408700 6468500 6791400 4084200 7498900 407520 7192800 4685100 5875800 5272100 6598700 5542700 6320200 6508600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4386100 8040600 44587 6997900 4874900 5668100 5208600 6535200 5408700 6468500 6791400 4084200 7498900 407520 7192800 4685100 5875800 5272100 6598700 5542700 6320200 6508600 2 2 1 2 2 2 2 2 2 2 2 465130000 0 465130000 9760 1263 9072 52266 63197;63198 63197 1706 2 IVVFQYSDGK Unmodified 1154.5972 0.59717465 1847 Q16531;Q16531-2 DDB1 DNA damage-binding protein 1 yes no 0 0 0 0 By MS/MS 7 0 1 1 61.166 61.659 2 5.3781E-07 20569 20211116_3446_TMUAki_TMT10x_S_F7 108.57 65.701 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9761 1847 9073 52267 63199 63199 1 IVVFQYSDGKLQTVAEK Unmodified 1924.0306 0.030578432 1847 Q16531;Q16531-2 DDB1 DNA damage-binding protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 3 2 1 66.846 66.623 3 1.4425E-07 20778 20211116_3428_TMUAki_TMT10x_P_F1 105.39 83.856 2265000 4713500 86500 3292700 3225700 3360200 3076000 3471600 3382600 3660200 3702300 2109600 4392900 281850 3460400 3094400 3421500 3137400 3529700 3439200 3566900 3561600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2265000 4713500 86500 3292700 3225700 3360200 3076000 3471600 3382600 3660200 3702300 2109600 4392900 281850 3460400 3094400 3421500 3137400 3529700 3439200 3566900 3561600 1 1 1 1 1 1 1 1 1 1 1 211190000 0 211190000 9762 1847 9074 52268;52269;52270 63200;63201;63202 63200 3 IVVNLTGR Unmodified 870.5287 0.52870115 1339 P62244 RPS15A 40S ribosomal protein S15a yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 2.69 2 2 2 2 4 4 48.738 48.519 2 0.0018343 15403 20211116_3430_TMUAki_TMT10x_P_F3 110.03 64.632 22409000 38248000 48718 37952000 41912000 42892000 26932000 27773000 25751000 25432000 30571000 20862000 35689000 1791300 38812000 39789000 43051000 28065000 28930000 26420000 24935000 29342000 5 5 1 5 5 5 5 5 5 5 5 15966000 27425000 0 27125000 35415000 37776000 21744000 19735000 18650000 18460000 21903000 14863000 25589000 1236900 27853000 33590000 37421000 22674000 20937000 19224000 18082000 21028000 3 3 0 3 3 3 3 3 3 3 3 6442600 10824000 48718 10827000 6497500 5115800 5188200 8038200 7101000 6971900 8668600 5998900 10100000 554340 10960000 6198500 5629600 5390300 7993300 7196000 6853100 8313700 2 2 1 2 2 2 2 2 2 2 2 2242600000 1526600000 715970000 9763 1339 9075 52271;52272;52273;52274;52275;52276;52277;52278 63203;63204;63205;63206;63207;63208;63209;63210;63211 63206 9 IVVPPLPGK Unmodified 918.59024 0.59023878 3186 Q9UMY4;Q9UMY4-1;Q9UMY4-3 SNX12 Sorting nexin-12 yes no 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 62.731 62.408 2 0.0031704 20628 20211116_3429_TMUAki_TMT10x_P_F2 81.784 76.625 15936000 25635000 170590 26287000 19450000 19556000 18296000 15509000 14994000 16167000 19299000 14839000 23922000 1529400 26670000 18631000 20247000 18517000 15992000 15551000 15762000 18484000 3 3 3 3 3 3 3 3 3 3 3 5070400 7840200 9889.8 8092300 7008300 9153700 6538700 5021700 4999600 5459300 6270900 4721100 7316700 456730 8253500 6708700 9166800 6609400 5327300 5198700 5313800 6010000 1 1 1 1 1 1 1 1 1 1 1 10866000 17795000 160700 18194000 12442000 10402000 11757000 10487000 9994000 10707000 13028000 10118000 16606000 1072700 18416000 11923000 11080000 11907000 10665000 10352000 10448000 12474000 2 2 2 2 2 2 2 2 2 2 2 696030000 354560000 341470000 9764 3186 9076 52279;52280;52281 63212;63213;63214 63212 3 IVVVTAGVR Unmodified 912.57565 0.57565135 531 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 0 By MS/MS By MS/MS 4.27 2.17 2 2 2 2 2 2 2 1 7 8 45.539 45.604 2 6.3778E-06 12912 20211116_3442_TMUAki_TMT10x_S_F4 174.69 131.77 85774000 149610000 953890 141600000 128530000 148590000 95116000 122530000 112320000 97545000 118420000 79868000 139570000 8226000 145120000 122440000 150360000 98761000 125150000 113730000 96297000 114050000 20 20 13 20 20 20 20 20 20 20 20 48771000 82316000 569850 78783000 89702000 115880000 61803000 68858000 64041000 54805000 66987000 45413000 76796000 4928100 81176000 85330000 114710000 64218000 71963000 65158000 54104000 64529000 10 10 7 10 10 10 10 10 10 10 10 37003000 67292000 384050 62815000 38832000 32710000 33313000 53672000 48283000 42740000 51435000 34455000 62774000 3297800 63947000 37108000 35651000 34543000 53185000 48577000 42193000 49520000 10 10 6 10 10 10 10 10 10 10 10 9223900000 5467300000 3756600000 9765 531 9077 52282;52283;52284;52285;52286;52287;52288;52289;52290;52291;52292;52293;52294;52295;52296 63215;63216;63217;63218;63219;63220;63221;63222;63223;63224;63225;63226;63227;63228;63229;63230;63231;63232;63233;63234 63229 20 IVVVWVGTNNHGHTAEQVTGGIK Unmodified 2415.2659 0.26589153 1770 Q15102 PAFAH1B3 Platelet-activating factor acetylhydrolase IB subunit gamma yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 54.375 54.152 4 1.0737E-27 17280 20211116_3429_TMUAki_TMT10x_P_F2 162.81 149.58 14546000 23307000 85036 24480000 19510000 22227000 15862000 13261000 12077000 13468000 16131000 13543000 21752000 1270200 24857000 18615000 22581000 16163000 13942000 12595000 13145000 15436000 4 4 2 4 4 4 4 4 4 4 4 8521800 12947000 43861 14113000 14016000 16918000 10724000 7458300 6889700 7633100 9136000 7934300 12086000 746580 14357000 13354000 16849000 10931000 8065700 7256600 7447600 8743700 2 2 1 2 2 2 2 2 2 2 2 6023800 10360000 41175 10367000 5493600 5309100 5138300 5803100 5186900 5835400 6995000 5609000 9666800 523610 10500000 5260600 5731700 5232000 5876200 5338800 5697800 6691900 2 2 1 2 2 2 2 2 2 2 2 1409200000 763420000 645770000 9766 1770 9078 52297;52298 63235;63236;63237;63238 63236 4 IVYGHLDDPASQEIER Unmodified 1840.8955 0.89554151 2605 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 47.866 47.746 3 2.7904E-21 15066 20211116_3430_TMUAki_TMT10x_P_F3 165.49 147.03 8003600 13161000 73026 15266000 15401000 12150000 9049600 10028000 10230000 8755000 12116000 7451200 12288000 653410 15379000 14600000 12522000 9548000 10265000 10422000 8603000 11629000 5 5 1 5 5 5 5 5 5 5 5 3784400 6057800 0 6953800 10567000 8377200 5067600 4558500 4367600 3637700 5359000 3522600 5655900 276650 7052000 9984900 8360500 5406100 4799900 4509100 3590700 5138900 2 2 0 2 2 2 2 2 2 2 2 4219200 7102900 73026 8312500 4834700 3772900 3982000 5469400 5862300 5117300 6756800 3928600 6632300 376760 8326800 4615500 4161700 4141900 5464800 5913300 5012300 6490300 3 3 1 3 3 3 3 3 3 3 3 1484200000 698510000 785720000 9767 2605 9079 52299;52300;52301;52302 63239;63240;63241;63242;63243 63240 5 IVYLYTK Unmodified 898.51641 0.51640513 1089 P49207 RPL34 60S ribosomal protein L34 yes yes 0 0 0 0 By MS/MS By MS/MS 2.4 0.49 3 2 2 3 60.286 59.989 2 0.0025075 21228 20211116_3441_TMUAki_TMT10x_S_F3 125.08 89.205 24972000 45195000 599000 18602000 41165000 51973000 6820900 55786000 7184300 12790000 49926000 23252000 42072000 2065300 18958000 38623000 50613000 7327800 55240000 7679500 12722000 46835000 6 6 2 2 4 4 2 5 2 2 6 10922000 18486000 234690 7463000 35322000 46534000 1337400 29278000 2702900 5428100 12469000 10168000 17208000 1138800 7707400 33007000 44608000 1777800 29925000 2922700 5405400 11723000 3 3 1 1 3 3 1 3 1 1 3 14050000 26709000 364310 11139000 5843000 5439900 5483500 26508000 4481400 7361700 37457000 13084000 24864000 926540 11251000 5615600 6005600 5549900 25315000 4756700 7316400 35112000 3 3 1 1 1 1 1 2 1 1 3 1688800000 976510000 712340000 9768 1089 9080 52303;52304;52305;52306;52307 63244;63245;63246;63247;63248;63249;63250 63249 7 IWAHEALR Unmodified 994.53485 0.53484916 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 36.781 37.219 3 0.0015272 8296 20211116_3434_TMUAki_TMT10x_P_F6 93.429 59.632 535910 759320 0 859220 1048500 952300 593650 450380 467130 454890 634900 498800 708900 27971 870880 992420 953120 622030 483380 486710 444080 607270 1 1 0 1 1 1 1 1 1 1 1 535910 759320 0 859220 1048500 952300 593650 450380 467130 454890 634900 498800 708900 27971 870880 992420 953120 622030 483380 486710 444080 607270 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33234000 33234000 0 9769 1695 9081 52308;52309;52310 63251;63252;63253 63251 3 IWCFGPDGTGPNILTDITK Unmodified 2104.0299 0.029926505 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 3 2 1 80.386 80.382 2;3 2.3321E-30 26567 20211116_3436_TMUAki_TMT10x_P_F8 169.62 153.48 16177000 24159000 37567 26592000 14592000 17799000 16587000 10278000 8807400 10961000 14744000 15061000 22552000 1135500 26824000 14030000 18506000 16480000 10850000 9511100 10677000 14040000 4 4 1 4 4 4 4 4 4 4 4 8002400 10524000 37567 12985000 6838400 10675000 7210300 5383900 4589000 5667600 6897700 7451000 9829000 649040 13038000 6566400 10899000 7213100 5749500 4865200 5523500 6582500 2 2 1 2 2 2 2 2 2 2 2 8174700 13635000 0 13607000 7754100 7124200 9377200 4894600 4218400 5293900 7846800 7609900 12723000 486460 13786000 7463700 7607500 9267100 5100900 4646000 5153900 7457200 2 2 0 2 2 2 2 2 2 2 2 3492400000 1955600000 1536800000 9770 653 9082 52311;52312;52313 63254;63255;63256;63257;63258 63256 5 IWDLEGK Unmodified 859.44397 0.44396847 1405 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 62.624 62.74 2 0.004389 19825 20211116_3433_TMUAki_TMT10x_P_F5 113.7 21.79 43461000 64361000 494070 90063000 98111000 61311000 57097000 27187000 25411000 29937000 55826000 40469000 60151000 4700100 89634000 93063000 63466000 59080000 29446000 28317000 29125000 52912000 6 6 4 6 6 6 6 6 6 6 6 28105000 41346000 322450 57506000 86544000 52482000 44894000 18327000 16675000 19439000 35349000 26170000 38640000 3320100 57449000 81947000 53007000 46842000 20390000 18861000 18939000 33522000 4 4 2 4 4 4 4 4 4 4 4 15356000 23015000 171620 32557000 11566000 8828800 12203000 8860100 8735900 10498000 20477000 14299000 21511000 1380000 32185000 11117000 10458000 12238000 9055800 9455600 10186000 19390000 2 2 2 2 2 2 2 2 2 2 2 1267600000 964070000 303560000 9771 1405 9083 52314;52315;52316;52317 63259;63260;63261;63262;63263;63264;63265 63262 7 IWDPTPSHTPAGAATPGR Unmodified 1830.9013 0.90129559 345 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 41.029 41.564 3 1.9277E-08 12243 20211116_3446_TMUAki_TMT10x_S_F7 113.33 85.563 1658400 2811800 32501 3270300 3775600 4083500 2528200 2311000 2364300 1893600 2465100 1544300 2625400 192240 3316000 3590500 4070000 2624600 2426600 2416000 1866600 2374900 4 4 2 4 4 4 4 4 4 4 4 1435000 2433300 32501 2767300 3578600 3932900 2344600 2089800 2147700 1703300 2134500 1336300 2271800 179280 2817000 3402300 3893300 2436600 2206200 2193100 1679500 2059400 2 2 2 2 2 2 2 2 2 2 2 223390 378420 0 502970 197020 150580 183630 221150 216600 190330 330690 207950 353570 12960 499050 188240 176720 187980 220360 222960 187150 315470 2 2 0 2 2 2 2 2 2 2 2 129690000 75181000 54506000 9772 345 9084 52318;52319 63266;63267;63268;63269 63269 4 IWDPVHR Unmodified 921.48209 0.48208531 848 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 By MS/MS 6 0 1 1 40.005 40.169 3 0.0032194 9876 20211116_3445_TMUAki_TMT10x_S_F6 100.07 75.068 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9773 848 9085 52320 63270 63270 1 IWHHTFYNELR Unmodified 1514.7419 0.74188183 1276;1406;1414;595 P60709;Q6S8J3;A5A3E0;P0CG38;Q9BYX7;P63261;P68133;P68032;P0CG39 ACTB;POTEE;POTEF;POTEI;POTEKP;ACTG1;ACTA1;ACTC1;POTEJ Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;POTE ankyrin domain family member J no no 0 0 0 0 By MS/MS By MS/MS 4.32 2.69 4 4 2 4 3 5 10 12 43.936 44.012 3;4 4.4182E-12 11043 20211116_3447_TMUAki_TMT10x_S_F8 177.78 138.9 25122000 42561000 386950 47811000 40498000 42843000 29607000 27563000 27133000 27181000 35203000 23394000 39733000 2406400 48330000 38576000 43608000 30525000 28784000 27998000 26562000 33710000 32 32 20 32 32 32 32 32 32 32 32 11365000 19091000 83999 20833000 26944000 31530000 18078000 11946000 11707000 12000000 15443000 10583000 17820000 1049700 21290000 25616000 31021000 18603000 13136000 12321000 11717000 14781000 12 12 6 12 12 12 12 12 12 12 12 13757000 23470000 302950 26977000 13553000 11313000 11530000 15617000 15426000 15182000 19761000 12811000 21913000 1356800 27039000 12961000 12588000 11922000 15648000 15677000 14845000 18928000 20 20 14 20 20 20 20 20 20 20 20 6383400000 4320500000 2062900000 9774 1276;1406;1414;595 9086 52321;52322;52323;52324;52325;52326;52327;52328;52329;52330;52331;52332;52333;52334;52335;52336;52337;52338;52339;52340;52341;52342 63271;63272;63273;63274;63275;63276;63277;63278;63279;63280;63281;63282;63283;63284;63285;63286;63287;63288;63289;63290;63291;63292;63293;63294;63295;63296;63297;63298;63299;63300;63301;63302;63303;63304;63305;63306 63303 36 IWIFDGPTGEGR Unmodified 1346.6619 0.66190017 2259 Q8NI36 WDR36 WD repeat-containing protein 36 yes yes 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 72.761 72.986 2 8.5315E-06 25356 20211116_3446_TMUAki_TMT10x_S_F7 112.11 94.376 3878200 6815400 87974 6102500 5127400 4207400 4757100 3133300 3412000 3450400 4887300 3611600 6356900 421010 6247600 4912500 4379000 4803000 3249400 3582400 3356800 4668900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3878200 6815400 87974 6102500 5127400 4207400 4757100 3133300 3412000 3450400 4887300 3611600 6356900 421010 6247600 4912500 4379000 4803000 3249400 3582400 3356800 4668900 1 1 1 1 1 1 1 1 1 1 1 764890000 444400000 320490000 9775 2259 9087 52343;52344;52345 63307;63308 63308 2 IWPYVYTLFSNK Unmodified 1529.7919 0.79185171 824 P27144 AK4 Adenylate kinase 4, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 47.676 47.555 3 0.090316 12997 20211116_3428_TMUAki_TMT10x_P_F1 29.689 3.1476 15928000 21719000 380700 23393000 17937000 17378000 12930000 19119000 14275000 12536000 21024000 14833000 20272000 1703500 23656000 17096000 18113000 13419000 19154000 14703000 12515000 20072000 3 3 3 3 3 3 3 3 3 3 3 6314600 6663700 83272 7586600 10989000 7869700 5898100 5917900 5721600 4115500 9314000 5880100 6221400 666600 7678700 10414000 7955800 6243400 6061500 5955900 4093700 8873700 1 1 1 1 1 1 1 1 1 1 1 9613400 15055000 297430 15806000 6948000 9508000 7032300 13201000 8553300 8420500 11710000 8953300 14051000 1036900 15977000 6682200 10158000 7175800 13093000 8747000 8420800 11198000 2 2 2 2 2 2 2 2 2 2 2 649740000 378320000 271430000 9776 824 9088 52346;52347 63309;63310;63311 63309 3 IWQYVYSK Unmodified 1085.5546 0.55458155 1298;1005 P42025;P61163 ACTR1B;ACTR1A Beta-centractin;Alpha-centractin no no 0 0 0 0 By MS/MS 3 0 1 1 70.301 70.052 2 0.006004 24254 20211116_3430_TMUAki_TMT10x_P_F3 86.67 40.542 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9777 1005;1298 9089 52348 63312 63312 1 IWSTVPTDEEDEMEESTNRPR Unmodified 2520.1075 0.10746114 2751 Q9GZL7 WDR12 Ribosome biogenesis protein WDR12 yes yes 0 0 0 1 By MS/MS 1 0 1 1 55.523 55.222 3 1.0438E-34 18251 20211116_3439_TMUAki_TMT10x_S_F1 181.34 157.33 1544300 2752200 1341 3251200 1593000 1212500 1236900 1933800 1727200 1621900 2216600 1437900 2569900 128110 3251100 1518400 1377100 1288500 1920400 1753000 1596900 2123100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1544300 2752200 1341 3251200 1593000 1212500 1236900 1933800 1727200 1621900 2216600 1437900 2569900 128110 3251100 1518400 1377100 1288500 1920400 1753000 1596900 2123100 2 2 1 2 2 2 2 2 2 2 2 84758000 0 84758000 9778 2751 9090 52349 63313;63314 63314 2 IWSVPNASCVQVVR Unmodified 1613.8348 0.83479593 3182 Q9UMS4 PRPF19 Pre-mRNA-processing factor 19 yes yes 0 0 0 0 By MS/MS By MS/MS 2.6 0.49 2 3 3 2 63.635 63.306 2;3 5.9505E-37 21511 20211116_3430_TMUAki_TMT10x_P_F3 239.48 203.97 17523000 27657000 26942 29226000 24447000 27816000 24453000 10812000 9185800 11748000 19075000 16314000 25813000 1319800 29684000 23426000 28042000 24331000 11879000 10364000 11435000 18095000 5 5 1 5 5 5 5 5 5 5 5 15207000 23573000 26942 24889000 21979000 26163000 22213000 9198000 7890500 10147000 15959000 14158000 22001000 1176300 25317000 21069000 26193000 22076000 10236000 8940300 9870600 15145000 4 4 1 4 4 4 4 4 4 4 4 2315800 4084400 0 4337200 2467400 1652700 2239600 1613500 1295300 1601300 3116500 2155900 3812100 143540 4366700 2356900 1848300 2254400 1642100 1423700 1564400 2950000 1 1 0 1 1 1 1 1 1 1 1 2311200000 1811200000 499970000 9779 3182 9091 52350;52351;52352;52353;52354 63315;63316;63317;63318;63319;63320 63316 6 IYADTFGDINYQEFAK Unmodified 1893.8785 0.87849447 1757 Q15029;Q15029-2;Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 By MS/MS By MS/MS 6 0.707 1 2 1 1 3 77.827 77.849 3 5.8115E-08 26071 20211116_3433_TMUAki_TMT10x_P_F5 117.2 105.56 3991200 5969000 0 5846600 3573800 6623100 4978300 3555100 3356000 3559100 4652900 3716100 5569200 314580 5984800 3461400 6630300 4926000 3769600 3531100 3475800 4448300 1 1 0 1 1 1 1 1 1 1 1 3991200 5969000 0 5846600 3573800 6623100 4978300 3555100 3356000 3559100 4652900 3716100 5569200 314580 5984800 3461400 6630300 4926000 3769600 3531100 3475800 4448300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2500200000 962640000 1537500000 9780 1757 9092 52355;52356;52357;52358 63321;63322 63321 2 IYDALDVSLIER Unmodified 1405.7453 0.74529545 1218 P54136;P54136-2 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By matching 3.67 0.471 1 2 2 1 76.967 76.918 2 0.0051992 25459 20211116_3431_TMUAki_TMT10x_P_F4 68.893 46.153 7318100 11581000 43071 9280700 6053200 11529000 6836700 6526800 6415900 7077900 8070700 6814200 10798000 629150 9664000 5826400 11494000 6880800 6904900 6604200 6890000 7734300 1 1 1 1 1 1 1 1 1 1 1 7318100 11581000 43071 9280700 6053200 11529000 6836700 6526800 6415900 7077900 8070700 6814200 10798000 629150 9664000 5826400 11494000 6880800 6904900 6604200 6890000 7734300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 692570000 480150000 212410000 9781 1218 9093 52359;52360;52361 63323 63323 1 IYDDDFFQNLDGVANALDNVDAR Unmodified 2599.1827 0.18267499 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.12 1.27 7 4 2 2 1 6 10 82.432 82.423 2;3 2.7161E-103 28832 20211116_3439_TMUAki_TMT10x_S_F1 322.89 306.47 28923000 45369000 115070 45917000 32844000 43078000 35118000 27518000 27112000 32058000 37264000 26929000 42336000 1375400 46762000 31538000 43710000 35255000 28900000 28292000 31123000 35633000 21 21 8 21 21 21 21 21 21 21 21 17498000 26555000 81048 26771000 16763000 29130000 19809000 14742000 14919000 19558000 22153000 16292000 24779000 678020 27330000 16145000 29207000 19782000 15859000 15649000 18903000 21146000 8 8 2 8 8 8 8 8 8 8 8 11425000 18814000 34018 19146000 16081000 13947000 15309000 12776000 12192000 12500000 15112000 10637000 17557000 697330 19431000 15393000 14503000 15472000 13041000 12644000 12219000 14487000 13 13 6 13 13 13 13 13 13 13 13 23961000000 15146000000 8814600000 9782 769 9094 52362;52363;52364;52365;52366;52367;52368;52369;52370;52371;52372;52373;52374;52375;52376;52377 63324;63325;63326;63327;63328;63329;63330;63331;63332;63333;63334;63335;63336;63337;63338;63339;63340;63341;63342;63343;63344;63345;63346;63347 63335 24 IYDLNKPEAEPK Unmodified 1415.7296 0.72964538 3284 Q9Y3F4;Q9Y3F4-2 STRAP Serine-threonine kinase receptor-associated protein yes no 0 0 0 1 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 46.954 47.09 3 2.4598E-06 12255 20211116_3434_TMUAki_TMT10x_P_F6 116.84 88.869 17049000 27877000 239980 34597000 35157000 25293000 20034000 23944000 28118000 17836000 27700000 15876000 26037000 1880000 34680000 33344000 26310000 21362000 24230000 28236000 17672000 26734000 6 6 4 6 6 6 6 6 6 6 6 6129200 9877900 181020 12235000 24138000 16380000 9309700 8482200 10656000 6359200 10034000 5708300 9226000 929080 12377000 22783000 16253000 10260000 8959100 10759000 6298200 9698700 2 2 2 2 2 2 2 2 2 2 2 10920000 17999000 58962 22362000 11018000 8913500 10724000 15462000 17462000 11477000 17666000 10168000 16811000 950930 22303000 10560000 10057000 11102000 15270000 17477000 11373000 17035000 4 4 2 4 4 4 4 4 4 4 4 890190000 398900000 491290000 9783 3284 9095 52378;52379;52380;52381;52382 63348;63349;63350;63351;63352;63353;63354;63355 63350 8 IYEFPETDDEEENK Unmodified 1756.7316 0.73155546 1838 Q16181;Q16181-2 SEPT7 Septin-7 yes no 0 0 0 0 By MS/MS 1 0 2 2 58.163 58.163 3 4.4139E-14 17314 20211116_3428_TMUAki_TMT10x_P_F1 133.48 122.21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9784 1838 9096 52383;52384 63356;63357 63356 2 IYEFPETDDEEENKLVK Unmodified 2096.979 0.97899637 1838 Q16181;Q16181-2 SEPT7 Septin-7 yes no 0 0 0 1 By MS/MS By MS/MS 2.8 0.98 3 2 3 2 62.534 62.396 3 9.8089E-16 20682 20211116_3429_TMUAki_TMT10x_P_F2 155.1 146.91 8975800 19067000 60549 11594000 20568000 33288000 18084000 23731000 23157000 22273000 17894000 8357400 17764000 912160 12680000 19660000 32358000 18630000 24566000 23150000 21813000 17425000 4 4 2 4 4 4 4 4 4 4 4 7195800 15128000 33313 9160300 18032000 30739000 16550000 19230000 18570000 17858000 14265000 6699800 14094000 728600 10089000 17251000 29725000 16927000 20091000 18650000 17498000 13894000 3 3 1 3 3 3 3 3 3 3 3 1780100 3938800 27236 2434200 2536700 2548700 1534000 4500900 4587500 4415500 3629400 1657600 3669700 183560 2591200 2408700 2633200 1703000 4475100 4499400 4315900 3530800 1 1 1 1 1 1 1 1 1 1 1 1564100000 1290400000 273670000 9785 1838 9097 52385;52386;52387;52388;52389 63358;63359;63360;63361;63362;63363 63358 6 IYELAAGGTAVGTGLNTR Unmodified 1762.9214 0.92136233 547 P07954;P07954-2 FH Fumarate hydratase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 7.57 0.495 3 4 3 4 61.848 62.142 2;3 1.4081E-70 18489 20211116_3447_TMUAki_TMT10x_S_F8 290.26 257.32 27848000 46825000 598530 46780000 33873000 38488000 31433000 34430000 32635000 32276000 38105000 25933000 43693000 2834500 47602000 32446000 39629000 32049000 35146000 33342000 31611000 36589000 10 10 6 10 10 10 10 10 10 10 10 9408200 15421000 302370 15113000 13979000 19853000 12915000 11338000 11677000 11027000 13343000 8761700 14388000 1065800 15510000 13392000 19742000 13117000 11948000 11993000 10782000 12820000 3 3 2 3 3 3 3 3 3 3 3 18440000 31404000 296150 31667000 19893000 18634000 18519000 23092000 20958000 21249000 24762000 17171000 29304000 1768700 32092000 19054000 19887000 18932000 23198000 21349000 20828000 23769000 7 7 4 7 7 7 7 7 7 7 7 7543600000 3846200000 3697400000 9786 547 9098 52390;52391;52392;52393;52394;52395;52396 63364;63365;63366;63367;63368;63369;63370;63371;63372;63373 63372 10 IYGADDIELLPEAQHK Unmodified 1810.9101 0.91012895 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 3.78 1.31 2 2 2 2 1 4 5 63.075 62.943 3 3.514E-21 20125 20211116_3442_TMUAki_TMT10x_S_F4 161.76 143.96 57600000 95426000 1277800 101960000 72423000 87733000 64706000 64673000 64546000 63034000 74841000 53640000 89067000 6101300 103340000 69322000 89735000 66033000 66870000 66037000 61630000 71877000 13 13 10 13 13 13 13 13 13 13 13 29294000 49214000 568410 51994000 41148000 63042000 38964000 32732000 34009000 31767000 37604000 27280000 45932000 3059200 53011000 39430000 62860000 39483000 34781000 34942000 31065000 36164000 7 7 5 7 7 7 7 7 7 7 7 28306000 46212000 709340 49962000 31275000 24691000 25742000 31940000 30537000 31267000 37237000 26361000 43135000 3042100 50327000 29892000 26875000 26549000 32089000 31094000 30565000 35714000 6 6 5 6 6 6 6 6 6 6 6 11009000000 5587600000 5421700000 9787 629 9099 52397;52398;52399;52400;52401;52402;52403;52404;52405 63374;63375;63376;63377;63378;63379;63380;63381;63382;63383;63384;63385;63386;63387 63383 14 IYGADDIELLPEAQHKAEVYTK Unmodified 2502.2642 0.26421978 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 6.25 0.829 1 1 2 2 2 66.752 67 4 7.2162E-20 20839 20211116_3445_TMUAki_TMT10x_S_F6 155.93 141.91 12125000 24879000 160300 17818000 21634000 21495000 16873000 23331000 21293000 21730000 20767000 11290000 23188000 1015300 18731000 20634000 21712000 17501000 23581000 21450000 21289000 20049000 4 4 3 4 4 4 4 4 4 4 4 3883000 7292100 24938 5261000 4560700 9265600 5711500 6983800 5662100 6588700 6343000 3615600 6796700 354660 5570500 4403500 9140900 5731700 7204000 5786500 6451100 6097700 1 1 1 1 1 1 1 1 1 1 1 8241600 17587000 135360 12557000 17073000 12229000 11161000 16347000 15631000 15142000 14424000 7674800 16391000 660670 13160000 16230000 12571000 11769000 16377000 15663000 14838000 13952000 3 3 2 3 3 3 3 3 3 3 3 3636600000 1797600000 1839000000 9788 629 9100 52406;52407;52408;52409 63388;63389;63390;63391 63391 4 IYGAPGVEFTGLHR Unmodified 1515.7834 0.78341229 1788 Q15334 LLGL1 Lethal(2) giant larvae protein homolog 1 yes yes 0 0 0 0 By matching By MS/MS 8 0 2 1 1 53.956 53.973 3 2.1058E-09 15248 20211116_3447_TMUAki_TMT10x_S_F8 128.68 112.75 1844500 3195600 0 3209500 1711100 1570200 1493000 1939500 1870700 1648000 2375000 1717400 2981900 148150 3248700 1635000 1709100 1537500 1944600 1904500 1621600 2275500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1844500 3195600 0 3209500 1711100 1570200 1493000 1939500 1870700 1648000 2375000 1717400 2981900 148150 3248700 1635000 1709100 1537500 1944600 1904500 1621600 2275500 1 1 0 1 1 1 1 1 1 1 1 598860000 370500000 228360000 9789 1788 9101 52410;52411 63392 63392 1 IYGETPEACR Unmodified 1194.5339 0.53392246 1149 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 0 0 0 0 By MS/MS 2 0 1 1 33.11 33.176 2 0.003466 7480 20211116_3440_TMUAki_TMT10x_S_F2 76.064 69.7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9790 1149 9102 52412 63393 63393 1 IYGFYDECK Unmodified 1193.5063 0.50631073 1333;1334;957 P62140;P36873;P36873-2;P62136;P62136-2;P62136-3 PPP1CB;PPP1CC;PPP1CA Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit no no 0 0 0 0 By MS/MS 5 0 1 1 58.342 58.477 2 3.2356E-05 16984 20211116_3444_TMUAki_TMT10x_S_F5 128.69 105.37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9791 1334;957;1333 9103 52413 63394 63394 1 IYGISFPDPK Unmodified 1135.5914 0.59136099 819 P26639;P26639-2 TARS Threonine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 7.25 0.661 1 4 3 4 4 68.777 68.897 2;3 6.7386E-09 21808 20211116_3436_TMUAki_TMT10x_P_F8 177.36 142.55 47795000 82184000 178880 79416000 61998000 85327000 60327000 56960000 54027000 56157000 63296000 44502000 76676000 4199500 81301000 59407000 85924000 61084000 59320000 55567000 54879000 60772000 7 7 4 7 7 7 7 7 7 7 7 28228000 47942000 112520 46106000 38510000 65202000 39474000 33935000 32644000 32846000 37052000 26284000 44728000 2557400 47451000 36955000 64543000 39778000 36048000 33665000 32124000 35606000 3 3 2 3 3 3 3 3 3 3 3 19567000 34242000 66363 33310000 23488000 20125000 20853000 23025000 21382000 23310000 26244000 18218000 31948000 1642200 33850000 22452000 21381000 21307000 23273000 21902000 22754000 25166000 4 4 2 4 4 4 4 4 4 4 4 6395900000 3414400000 2981500000 9792 819 9104 52414;52415;52416;52417;52418;52419;52420;52421 63395;63396;63397;63398;63399;63400;63401;63402;63403;63404 63398 10 IYGLGSLALYEK Unmodified 1325.7231 0.72310344 949;950 P36542;P36542-2 ATP5C1 ATP synthase subunit gamma, mitochondrial no no 0 0 0 0 By MS/MS By MS/MS 2.29 2.37 4 2 1 2 5 76.879 76.823 2;3 4.2295E-15 25197 20211116_3440_TMUAki_TMT10x_S_F2 162.36 124.89 11843000 21708000 45.928 19084000 17405000 14938000 13718000 11463000 13029000 13912000 14267000 11026000 20246000 902340 19592000 16585000 15395000 14086000 11904000 13329000 13486000 13725000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11843000 21708000 45.928 19084000 17405000 14938000 13718000 11463000 13029000 13912000 14267000 11026000 20246000 902340 19592000 16585000 15395000 14086000 11904000 13329000 13486000 13725000 2 2 1 2 2 2 2 2 2 2 2 1195100000 0 1195100000 9793 949;950 9105 52422;52423;52424;52425;52426;52427;52428 63405;63406;63407;63408;63409;63410 63409 6 IYHPNIDEK Unmodified 1127.5611 0.56112349 1415 P68036;P68036-2;P68036-3;A0A1B0GUS4 UBE2L3 Ubiquitin-conjugating enzyme E2 L3 yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 37.097 37.153 3 7.9184E-05 9556 20211116_3433_TMUAki_TMT10x_P_F5 134.25 85.453 2688900 4190400 27920 4898000 6658200 4814100 3288800 3225200 3827000 2833900 3667600 2503700 3912700 278270 4945500 6299500 4873700 3528800 3347600 3864100 2783800 3542900 3 3 2 3 3 3 3 3 3 3 3 1853000 2891200 27920 3241400 5672800 4124600 2308800 2230300 2672500 1919400 2398800 1725500 2699100 233140 3295200 5356500 4104800 2529100 2354000 2693200 1887400 2322500 2 2 2 2 2 2 2 2 2 2 2 835950 1299200 0 1656600 985400 689480 979970 994830 1154400 914460 1268800 778140 1213600 45126 1650300 943010 768920 999710 993660 1170900 896420 1220400 1 1 0 1 1 1 1 1 1 1 1 410160000 330130000 80026000 9794 1415 9106 52429;52430;52431 63411;63412;63413 63412 3 IYHPNINSNGSICLDILR Unmodified 2098.063 0.062957968 1291 P61077;P61077-3;P61077-2;P62837;P62837-2;Q9Y2X8;P51668 UBE2D3;UBE2D2;UBE2D4;UBE2D1 Ubiquitin-conjugating enzyme E2 D3;Ubiquitin-conjugating enzyme E2 D2;Ubiquitin-conjugating enzyme E2 D4;Ubiquitin-conjugating enzyme E2 D1 yes no 0 0 0 0 By MS/MS By MS/MS 2 1.1 2 2 1 3 2 63.923 63.739 3 2.2831E-17 21241 20211116_3429_TMUAki_TMT10x_P_F2 144.97 127.39 14990000 26136000 211220 24268000 15626000 25577000 17602000 17600000 15973000 16224000 17309000 13959000 24380000 1442100 24909000 15045000 25796000 17700000 18256000 16368000 15902000 16656000 5 5 3 5 5 5 5 5 5 5 5 10205000 17109000 205990 16358000 10355000 19732000 12590000 12081000 10068000 10471000 10811000 9503500 15961000 1033900 16792000 9997400 19721000 12576000 12621000 10379000 10293000 10406000 3 3 2 3 3 3 3 3 3 3 3 4785200 9026800 5220.2 7909200 5270800 5845500 5011500 5519500 5904700 5753200 6498200 4455600 8418800 408170 8116800 5047700 6075000 5124600 5635300 5989000 5609300 6250200 2 2 1 2 2 2 2 2 2 2 2 2190600000 1744800000 445790000 9795 1291 9107 52432;52433;52434;52435;52436 63414;63415;63416;63417;63418;63419;63420 63416 7 IYHPNVDK Unmodified 984.50288 0.50288033 1294 P61088;Q5JXB2 UBE2N;UBE2NL Ubiquitin-conjugating enzyme E2 N;Putative ubiquitin-conjugating enzyme E2 N-like yes no 0 0 0 0 By MS/MS By MS/MS 4.8 0.4 1 4 2 3 33.443 33.488 3 0.0015217 8203 20211116_3433_TMUAki_TMT10x_P_F5 99.136 68.691 2634500 4379100 9258 4205300 4486000 4432800 3087900 2367600 2537600 2270200 3132200 2453000 4085500 252610 4305800 4266800 4455400 3188300 2508500 2626800 2221200 3003100 3 3 1 3 3 3 3 3 3 3 3 2302300 3829700 9258 3665000 4153200 4145800 2683900 2062500 2226100 1985100 2704100 2143700 3572900 225130 3757700 3945900 4147000 2785100 2199800 2301700 1942000 2593800 2 2 1 2 2 2 2 2 2 2 2 332150 549390 0 540370 332790 287050 404010 305060 311530 285020 428070 309260 512610 27485 548120 320880 308450 403220 308660 325110 279190 409340 1 1 0 1 1 1 1 1 1 1 1 163600000 152550000 11049000 9796 1294 9108 52437;52438;52439;52440;52441 63421;63422;63423;63424;63425 63422 5 IYHPNVDKLGR Unmodified 1310.7095 0.70951906 1294 P61088 UBE2N Ubiquitin-conjugating enzyme E2 N yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 36.102 36.079 4 0.00030879 10344 20211116_3439_TMUAki_TMT10x_S_F1 89.731 81.321 1134200 1981900 16492 1623600 4237300 4118900 2050800 3764700 4184700 2993300 2580700 1056200 1848000 152860 1718900 4009000 4034200 2260600 3822500 4106900 2955200 2539200 3 3 3 3 3 3 3 3 3 3 3 753240 1348500 11898 1101000 3667000 3514900 1644600 2534300 2862500 1997900 1694700 701430 1257400 114350 1176800 3466000 3409800 1811600 2610200 2817300 1973300 1670900 2 2 2 2 2 2 2 2 2 2 2 380980 633420 4593.9 522550 570310 603980 406180 1230400 1322200 995400 886090 354760 590630 38519 542130 542990 624350 448950 1212300 1289500 981840 868280 1 1 1 1 1 1 1 1 1 1 1 173830000 85256000 88571000 9797 1294 9109 52442;52443 63426;63427;63428 63428 3 IYIDSNNNPER Unmodified 1333.6262 0.62624295 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.25 0.968 2 3 2 1 4 4 38.103 38.127 2;3 9.4379E-38 10010 20211116_3442_TMUAki_TMT10x_S_F4 282.13 238.32 2995000 4638100 609.38 5587000 6325800 4230900 3514800 3012100 4275600 2694700 4263600 2788300 4331400 258900 5612400 5992500 4366400 3735800 3114500 4316000 2644800 4113300 8 8 1 8 8 8 8 8 8 8 8 1425900 2031600 609.38 2519200 4712600 2945300 1722900 1554100 1974900 1374800 1952100 1327600 1897600 153750 2541900 4442800 2942900 1911800 1644900 1997300 1350100 1883800 5 5 1 5 5 5 5 5 5 5 5 1569000 2606500 0 3067800 1613200 1285600 1791900 1458000 2300700 1319900 2311600 1460700 2433900 105150 3070400 1549600 1423400 1824000 1469600 2318700 1294700 2229500 3 3 0 3 3 3 3 3 3 3 3 306430000 152680000 153750000 9798 1471 9110 52444;52445;52446;52447;52448;52449;52450;52451 63429;63430;63431;63432;63433;63434;63435;63436;63437 63437 9 IYIHPRYNWK Unmodified 1388.7353 0.73533988 32 CON__P00735 yes yes 0 0 0 1 By matching By MS/MS 1.67 0.471 1 2 2 1 48.074 47.954 3 0.096362 13511 20211116_3440_TMUAki_TMT10x_S_F2 37.112 0.26474 + 2149600 3714900 71515 3605200 2307900 1964700 2144500 3377700 3190200 2777900 3095200 2002000 3466000 247080 3661100 2213100 2134400 2216100 3345000 3196400 2737800 2988700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2149600 3714900 71515 3605200 2307900 1964700 2144500 3377700 3190200 2777900 3095200 2002000 3466000 247080 3661100 2213100 2134400 2216100 3345000 3196400 2737800 2988700 1 1 1 1 1 1 1 1 1 1 1 1203900000 743090000 460820000 9799 32 9111 52452;52453;52454 63438 63438 1 IYKLDDPSCPRPECYR Unmodified 2067.9506 0.95063033 993 P41091 EIF2S3 Eukaryotic translation initiation factor 2 subunit 3 yes yes 0 0 0 2 By MS/MS By MS/MS 6.67 1.11 1 2 1 2 3 3 42.113 42.288 4 9.8451E-11 10962 20211116_3436_TMUAki_TMT10x_P_F8 135.58 125.24 12297000 20726000 254710 28477000 32870000 34766000 19054000 19330000 18004000 16603000 19112000 11451000 19369000 1545000 28598000 31186000 34682000 20017000 20351000 18401000 16328000 18402000 5 5 5 5 5 5 5 5 5 5 5 9715400 16363000 180540 23122000 30926000 33062000 17582000 15014000 14170000 13127000 15163000 9047300 15294000 1270800 23259000 29329000 32663000 18426000 16120000 14600000 12898000 14597000 3 3 3 3 3 3 3 3 3 3 3 2581400 4363300 74169 5355300 1944300 1703600 1472400 4316000 3834200 3476700 3948500 2404100 4075200 274210 5338600 1856900 2019500 1591300 4231200 3801300 3430100 3805400 2 2 2 2 2 2 2 2 2 2 2 2389100000 1971700000 417400000 9800 993 9112 52455;52456;52457;52458;52459;52460 63439;63440;63441;63442;63443 63441 5 IYKVPSTEAEALASSLMGLFEK Oxidation (M) 2399.2294 0.22941417 1133 P50395 GDI2 Rab GDP dissociation inhibitor beta yes yes 0 0 1 1 By MS/MS By MS/MS 3.75 2.89 3 4 1 1 3 7 5 80.325 80.315 3;4 2.5742E-19 27877 20211116_3429_TMUAki_TMT10x_P_F2 141.78 126.53 67451000 111650000 706310 88211000 82621000 107250000 83645000 82893000 83747000 87256000 82945000 62805000 104090000 6006200 91930000 79260000 107540000 84795000 85640000 85165000 85039000 80039000 14 14 7 14 14 14 14 14 14 14 14 27903000 42941000 305690 34295000 23908000 56403000 29504000 32540000 34365000 35023000 32458000 25981000 40036000 2268100 35928000 23066000 55560000 29785000 34363000 34680000 34103000 31370000 7 7 4 7 7 7 7 7 7 7 7 39548000 68709000 400630 53916000 58712000 50844000 54141000 50354000 49382000 52233000 50488000 36825000 64057000 3738000 56002000 56194000 51975000 55009000 51277000 50486000 50936000 48669000 7 7 3 7 7 7 7 7 7 7 7 18577000000 8829100000 9747700000 9801 1133 9113 52461;52462;52463;52464;52465;52466;52467;52468;52469;52470;52471;52472 63444;63445;63446;63447;63448;63449;63450;63451;63452;63453;63454;63455;63456;63457 63447 1492 14 IYKVPSTETEALASNLMGMFEK Oxidation (M) 2474.2073 0.20729852 884 P31150 GDI1 Rab GDP dissociation inhibitor alpha yes yes 0 0 1 1 By MS/MS 8 0 1 1 78.213 78.22 4 0.0012426 25700 20211116_3436_TMUAki_TMT10x_P_F8 61.136 32 8274500 13214000 180480 11041000 8115000 14750000 10707000 6527500 5731900 7917300 9352900 7705700 12322000 851980 11472000 7857100 14613000 10571000 7093300 6177400 7675200 8910300 1 1 1 1 1 1 1 1 1 1 1 8274500 13214000 180480 11041000 8115000 14750000 10707000 6527500 5731900 7917300 9352900 7705700 12322000 851980 11472000 7857100 14613000 10571000 7093300 6177400 7675200 8910300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1081800000 1081800000 0 9802 884 9114 52473 63458 63458 1060;1061 1 IYKVPSTETEALASNLMGMFEK 2 Oxidation (M) 2490.2022 0.20221315 884 P31150 GDI1 Rab GDP dissociation inhibitor alpha yes yes 0 0 2 1 By MS/MS 8 0 1 1 72.358 72.404 3 3.2054E-05 23279 20211116_3436_TMUAki_TMT10x_P_F8 71.592 56.338 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9803 884 9114 52474 63459 63459 1060;1061 1 IYLDMLNVYK Unmodified 1270.6631 0.66314572 153 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 By MS/MS 2 0 1 1 78.929 78.898 2 2.7448E-05 27287 20211116_3429_TMUAki_TMT10x_P_F2 104.01 74.347 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9804 153 9115 52475 63460 63460 1 IYLDMLNVYK Oxidation (M) 1286.6581 0.65806035 153 O14980 XPO1 Exportin-1 yes yes 0 0 1 0 By MS/MS By MS/MS 8 0 2 1 1 70.871 70.698 2 0.0029586 22079 20211116_3447_TMUAki_TMT10x_S_F8 82.452 61.005 3800400 7433800 92399 6665000 4938800 4643600 4285900 6645900 5496400 5702900 5637500 3539300 6933600 417140 6823400 4724700 4900300 4419000 6627800 5543700 5608600 5433900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3800400 7433800 92399 6665000 4938800 4643600 4285900 6645900 5496400 5702900 5637500 3539300 6933600 417140 6823400 4724700 4900300 4419000 6627800 5543700 5608600 5433900 1 1 1 1 1 1 1 1 1 1 1 442620000 0 442620000 9805 153 9115 52476;52477 63461;63462 63462 109 2 IYNDDKNTYIR Unmodified 1413.6888 0.6888432 345 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 0 1 By MS/MS 6 0 1 1 39.24 39.404 3 0.00026401 9480 20211116_3445_TMUAki_TMT10x_S_F6 89.46 40.092 489680 815840 9074 892780 478560 447050 519960 637670 739660 548180 805020 456010 761550 48899 898680 460450 487200 532050 636040 745180 539070 774550 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 489680 815840 9074 892780 478560 447050 519960 637670 739660 548180 805020 456010 761550 48899 898680 460450 487200 532050 636040 745180 539070 774550 2 2 2 2 2 2 2 2 2 2 2 34275000 0 34275000 9806 345 9116 52478 63463;63464 63464 2 IYNSIYIGSQDALIAHYPR Unmodified 2193.1219 0.12185306 345 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.83 3.02 2 1 1 2 4 2 67.662 67.559 3 6.5045E-24 23233 20211116_3439_TMUAki_TMT10x_S_F1 166.52 156.77 38344000 60819000 642900 59721000 41891000 60736000 43632000 35378000 35960000 37680000 42903000 35706000 56747000 3773700 61018000 40246000 61241000 43929000 37319000 37165000 36706000 41172000 10 10 9 10 10 10 10 10 10 10 10 28825000 45426000 508610 44333000 30768000 51093000 33115000 27116000 27290000 28794000 32642000 26842000 42384000 2891000 45406000 29592000 51094000 33287000 28830000 28208000 28053000 31323000 7 7 7 7 7 7 7 7 7 7 7 9519300 15393000 134300 15388000 11122000 9642900 10517000 8262500 8669400 8886200 10261000 8864000 14363000 882700 15613000 10654000 10147000 10642000 8489100 8956900 8653100 9848900 3 3 2 3 3 3 3 3 3 3 3 3939400000 2803000000 1136400000 9807 345 9117 52479;52480;52481;52482;52483;52484 63465;63466;63467;63468;63469;63470;63471;63472;63473;63474;63475 63473 11 IYPSRDEYEAHQER Unmodified 1791.8176 0.81762554 2577 Q99496 RNF2 E3 ubiquitin-protein ligase RING2 yes yes 0 0 0 1 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 30.644 30.549 4 2.9007E-06 6578 20211116_3431_TMUAki_TMT10x_P_F4 111.34 3.6099 518460 824730 15509 846160 1175400 974560 608300 664990 779700 517470 744040 482850 769640 66639 863630 1113700 977940 651980 687320 784440 511460 718850 2 2 2 2 2 2 2 2 2 2 2 348130 575080 10865 571740 1002500 830690 455840 424330 492270 350640 487660 324230 536600 48153 587380 948190 821150 492090 449730 499040 345490 470570 1 1 1 1 1 1 1 1 1 1 1 170320 249650 4644.1 274420 172890 143870 152460 240650 287430 166820 256380 158620 233040 18485 276260 165540 156790 159890 237590 285400 165970 248280 1 1 1 1 1 1 1 1 1 1 1 145270000 97323000 47951000 9808 2577 9118 52485;52486;52487 63476;63477 63476 2 IYPSREEYEAHQDR Unmodified 1791.8176 0.81762554 1530 Q06587;Q06587-2 RING1 E3 ubiquitin-protein ligase RING1 yes no 0 0 0 1 By MS/MS 4 0 1 1 30.56 30.594 3 3.0113E-06 6607 20211116_3431_TMUAki_TMT10x_P_F4 108.89 37.539 209580 389460 7096.3 415380 680530 629560 325690 376320 397920 299080 369080 195190 363500 30585 425130 644040 622460 351150 393080 400630 295280 356930 2 2 2 2 2 2 2 2 2 2 2 209580 389460 7096.3 415380 680530 629560 325690 376320 397920 299080 369080 195190 363500 30585 425130 644040 622460 351150 393080 400630 295280 356930 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21421000 21421000 0 9809 1530 9119 52488 63478;63479 63478 2 IYPTFLHLHGK Unmodified 1324.7292 0.72919187 1550 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.36 0.881 2 4 4 1 5 6 51.351 51.29 3;4 2.0985E-08 16563 20211116_3430_TMUAki_TMT10x_P_F3 148.32 131.11 20982000 36102000 102280 40248000 35075000 39059000 23821000 31070000 29554000 27272000 28114000 19535000 33703000 1811800 40749000 33341000 39684000 24928000 31879000 29764000 26791000 27166000 10 10 4 10 10 10 10 10 10 10 10 11887000 19805000 73545 21840000 25823000 31452000 16655000 17020000 16275000 15226000 15269000 11068000 18488000 1168900 22280000 24529000 31124000 17362000 17979000 16538000 14944000 14761000 6 6 3 6 6 6 6 6 6 6 6 9095200 16298000 28732 18408000 9252100 7607300 7165200 14050000 13279000 12046000 12845000 8467700 15215000 642900 18468000 8811500 8560800 7566400 13900000 13226000 11847000 12405000 4 4 1 4 4 4 4 4 4 4 4 7676100000 4559000000 3117000000 9810 1550 9120 52489;52490;52491;52492;52493;52494;52495;52496;52497;52498;52499 63480;63481;63482;63483;63484;63485;63486;63487;63488;63489 63481 10 IYQIYEGTSQIQR Unmodified 1597.81 0.81002097 623 P11310;P11310-2 ACADM Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 7 0 4 2 2 55.364 55.991 2;3 2.0954E-15 18257 20211116_3446_TMUAki_TMT10x_S_F7 178.7 139.15 11802000 20957000 0 21160000 15708000 19326000 12443000 17289000 17906000 14659000 17747000 10989000 19556000 993820 21545000 14977000 19755000 12962000 17602000 17972000 14425000 17125000 4 4 0 4 4 4 4 4 4 4 4 5054200 9528400 0 8956500 9424400 13002000 6922500 7488500 7637000 6110900 7033800 4705700 8888900 448410 9238000 8971600 12872000 7174800 7850800 7716700 6025000 6803900 2 2 0 2 2 2 2 2 2 2 2 6748300 11429000 0 12204000 6283900 6323300 5520800 9800000 10269000 8548200 10713000 6283300 10667000 545410 12307000 6005700 6882600 5786900 9751100 10255000 8400200 10321000 2 2 0 2 2 2 2 2 2 2 2 2029600000 909210000 1120400000 9811 623 9121 52500;52501;52502;52503 63490;63491;63492;63493 63492 4 IYQNIQDGSLDLNAAESGVQHKPSAPQGGR Unmodified 3149.549 0.54900226 1295 P61106 RAB14 Ras-related protein Rab-14 yes yes 0 0 0 1 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 54.017 54.254 4 2.4179E-82 15141 20211116_3434_TMUAki_TMT10x_P_F6 246.44 223.23 5778900 11026000 90434 10769000 7530000 11079000 5990300 8470400 8970100 8609300 8339300 5381200 10287000 563930 11009000 7185300 11209000 6249000 8748000 8972800 8402500 8064200 4 4 3 4 4 4 4 4 4 4 4 2500600 4753800 46252 4738800 4255200 7598000 3514100 3676600 3724000 3778500 3642500 2328600 4435700 275000 4878200 4064300 7475800 3609700 3939000 3776500 3686000 3516300 2 2 2 2 2 2 2 2 2 2 2 3278300 6272100 44182 6030600 3274700 3480800 2476200 4793900 5246100 4830800 4696800 3052600 5851600 288930 6131200 3121000 3732800 2639200 4808900 5196300 4716500 4547800 2 2 1 2 2 2 2 2 2 2 2 3762000000 1482900000 2279200000 9812 1295 9122 52504;52505;52506 63494;63495;63496;63497 63495 4 IYSHSLLPVLR Unmodified 1296.7554 0.75540662 766 P22102 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 55.287 55.205 3 4.8901E-19 18248 20211116_3430_TMUAki_TMT10x_P_F3 202.96 184.9 2889100 4828700 61230 5580400 4025300 4835900 3206300 3954900 3624600 3426400 3958300 2690500 4508500 312500 5628700 3842700 4952600 3308100 4049700 3680900 3368200 3808100 4 4 4 4 4 4 4 4 4 4 4 1304700 2185600 20793 2491100 2482500 3405400 1886200 1965600 1792100 1634400 1733900 1215000 2040500 144050 2533400 2366600 3380400 1941500 2061200 1825200 1609900 1674500 2 2 2 2 2 2 2 2 2 2 2 1584300 2643100 40437 3089400 1542800 1430500 1320100 1989300 1832500 1792000 2224300 1475500 2468000 168460 3095300 1476100 1572200 1366600 1988500 1855700 1758300 2133600 2 2 2 2 2 2 2 2 2 2 2 1686400000 577210000 1109200000 9813 766 9123 52507;52508;52509;52510 63498;63499;63500;63501;63502 63498 5 IYSYVVSRPQPR Unmodified 1463.7885 0.78849767 2426 Q96CS3 FAF2 FAS-associated factor 2 yes yes 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 41.227 41.34 3 2.5215E-05 12285 20211116_3430_TMUAki_TMT10x_P_F3 94.402 56.653 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9814 2426 9124 52511;52512;52513 63503;63504;63505 63503 3 IYVAELIQQLQQQALSEPAVVQK Unmodified 2595.4272 0.42720278 1590 Q13084 MRPL28 39S ribosomal protein L28, mitochondrial yes yes 0 0 0 0 By matching By MS/MS 2.5 0.5 1 1 1 1 82.354 82.339 4 0.00050712 30182 20211116_3441_TMUAki_TMT10x_S_F3 62.19 46.936 227320 377660 0 358190 365140 309460 255900 268760 298850 226210 375440 211640 352330 18540 366060 347220 317350 266610 274040 304860 222680 359800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 227320 377660 0 358190 365140 309460 255900 268760 298850 226210 375440 211640 352330 18540 366060 347220 317350 266610 274040 304860 222680 359800 1 1 0 1 1 1 1 1 1 1 1 209010000 108630000 100380000 9815 1590 9125 52514;52515 63506 63506 1 IYVDDGLISLQVK Unmodified 1461.8079 0.80789571 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 By matching By MS/MS 4.5 0.5 1 1 1 1 77.712 77.726 2 9.5018E-09 24901 20211116_3444_TMUAki_TMT10x_S_F5 123.75 89.671 3615800 5921700 13409 6235000 4894900 3884300 4630200 3350000 2891500 3754700 4477900 3366800 5526800 330190 6303400 4687600 4090100 4656600 3445100 3074000 3650400 4270600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3615800 5921700 13409 6235000 4894900 3884300 4630200 3350000 2891500 3754700 4477900 3366800 5526800 330190 6303400 4687600 4090100 4656600 3445100 3074000 3650400 4270600 1 1 1 1 1 1 1 1 1 1 1 1203300000 600650000 602650000 9816 670;671 9126 52516;52517 63507 63507 1 IYVEIER Unmodified 920.49673 0.49673232 74 O00232;O00232-2 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes no 0 0 0 0 By MS/MS By MS/MS 2.71 1.03 1 2 2 2 4 3 47.734 47.673 2 0.0041712 13486 20211116_3431_TMUAki_TMT10x_P_F4 114.78 52.066 21161000 32195000 0 37703000 32065000 31376000 22507000 25381000 24596000 22310000 28455000 19701000 30062000 1649900 37979000 30488000 32219000 23394000 26016000 25067000 21916000 27330000 6 6 0 6 6 6 6 6 6 6 6 11684000 17326000 0 20887000 22599000 23327000 14227000 12645000 12590000 12058000 14972000 10878000 16180000 1013000 21093000 21452000 23374000 14818000 13379000 12964000 11801000 14370000 3 3 0 3 3 3 3 3 3 3 3 9477000 14868000 0 16816000 9465500 8048800 8280100 12735000 12006000 10253000 13482000 8822800 13881000 636880 16886000 9036500 8845600 8576200 12637000 12103000 10115000 12960000 3 3 0 3 3 3 3 3 3 3 3 1530500000 784420000 746030000 9817 74 9127 52518;52519;52520;52521;52522;52523;52524 63508;63509;63510;63511;63512;63513 63510 6 IYVGLSK Unmodified 778.45889 0.45889025 260 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 0 0 0 0 By MS/MS By MS/MS 2.8 2.64 2 2 1 3 2 52.91 52.667 2 0.005513 15394 20211116_3440_TMUAki_TMT10x_S_F2 108.09 50.983 17239000 27842000 242330 27814000 19677000 20471000 19111000 17142000 16330000 16673000 21228000 16053000 25979000 1689200 28267000 18868000 21233000 19328000 17582000 16908000 16303000 20326000 3 3 3 3 3 3 3 3 3 3 3 7415400 11309000 55396 10829000 9187600 11814000 9791300 6499400 5977300 6419200 8304500 6904900 10551000 691240 11096000 8828000 11855000 9782100 6874000 6330300 6272700 7939000 1 1 1 1 1 1 1 1 1 1 1 9823600 16532000 186930 16986000 10489000 8656600 9319200 10642000 10353000 10254000 12924000 9148200 15428000 997980 17172000 10040000 9377200 9546100 10708000 10578000 10031000 12387000 2 2 2 2 2 2 2 2 2 2 2 1045600000 404340000 641260000 9818 260 9128 52525;52526;52527;52528;52529 63514;63515;63516;63517;63518 63518 5 IYVGNLPPDIR Unmodified 1255.6925 0.69247202 1543 Q07955;Q07955-3;Q07955-2 SRSF1 Serine/arginine-rich splicing factor 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.97 0.883 2 7 13 10 10 22 59.744 59.993 2;3 4.0626E-11 17730 20211116_3445_TMUAki_TMT10x_S_F6 127.94 75.463 129410000 217550000 927290 210930000 168130000 218090000 151070000 179220000 172170000 169360000 180230000 120500000 202970000 11764000 215760000 160810000 220860000 154780000 183890000 174510000 165810000 173610000 30 30 14 30 30 30 30 30 30 30 30 69440000 111900000 428550 111100000 100050000 153260000 87244000 91326000 89990000 86016000 93911000 64657000 104420000 6351500 114030000 95618000 152140000 89250000 95821000 91568000 84226000 90471000 10 10 6 10 10 10 10 10 10 10 10 59970000 105640000 498740 99835000 68081000 64828000 63827000 87897000 82175000 83341000 86317000 55841000 98554000 5412200 101740000 65195000 68720000 65533000 88067000 82943000 81583000 83138000 20 20 8 20 20 20 20 20 20 20 20 9992000000 4242000000 5750000000 9819 1543 9129 52530;52531;52532;52533;52534;52535;52536;52537;52538;52539;52540;52541;52542;52543;52544;52545;52546;52547;52548;52549;52550;52551;52552;52553;52554;52555;52556;52557;52558;52559;52560;52561 63519;63520;63521;63522;63523;63524;63525;63526;63527;63528;63529;63530;63531;63532;63533;63534;63535;63536;63537;63538;63539;63540;63541;63542;63543;63544;63545;63546;63547;63548;63549;63550;63551;63552;63553;63554;63555;63556;63557;63558;63559;63560;63561 63535 43 IYVGNLPTDVR Unmodified 1245.6717 0.67173657 1611 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 yes yes 0 0 0 0 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 55.999 56.35 2 3.1042E-19 18431 20211116_3446_TMUAki_TMT10x_S_F7 234.81 186.96 29296000 49138000 115580 54371000 45354000 52220000 31705000 46141000 47089000 42707000 42700000 27276000 45870000 2548200 55065000 43138000 53194000 33350000 47117000 47076000 41852000 41327000 5 5 2 5 5 5 5 5 5 5 5 16114000 25939000 115580 28684000 32614000 39249000 21099000 23962000 23955000 22532000 22781000 15004000 24214000 1591400 29227000 30984000 38989000 22092000 25091000 24204000 22065000 22013000 3 3 2 3 3 3 3 3 3 3 3 13182000 23199000 0 25686000 12740000 12971000 10606000 22179000 23134000 20175000 19918000 12273000 21656000 956770 25839000 12154000 14205000 11257000 22026000 22872000 19786000 19314000 2 2 0 2 2 2 2 2 2 2 2 5400400000 2944200000 2456200000 9820 1611 9130 52562;52563;52564;52565;52566 63562;63563;63564;63565;63566;63567 63567 6 IYVISLAEPR Unmodified 1159.6601 0.66010926 678 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 6.2 2.64 1 2 2 2 3 65.228 65.411 2 3.2262E-06 21531 20211116_3435_TMUAki_TMT10x_P_F7 147.51 104.51 42059000 72791000 485410 70988000 53875000 69467000 48965000 58739000 53577000 56346000 59661000 39163000 67915000 4011700 72524000 51557000 70621000 50067000 60192000 54520000 55129000 57364000 6 6 5 6 6 6 6 6 6 6 6 17415000 30146000 259830 30094000 25425000 43062000 23787000 25467000 22994000 23790000 24628000 16216000 28129000 1705000 30898000 24347000 42673000 24189000 26731000 23486000 23303000 23707000 2 2 1 2 2 2 2 2 2 2 2 24644000 42646000 225590 40894000 28449000 26405000 25178000 33273000 30583000 32556000 35033000 22947000 39786000 2306700 41626000 27210000 27947000 25878000 33461000 31034000 31825000 33657000 4 4 4 4 4 4 4 4 4 4 4 6361800000 3058100000 3303700000 9821 678 9131 52567;52568;52569;52570;52571 63568;63569;63570;63571;63572;63573 63568 6 IYVMATHGILSAEAPR Oxidation (M) 1743.8978 0.89779012 1714 Q14558;Q14558-2 PRPSAP1 Phosphoribosyl pyrophosphate synthase-associated protein 1 yes no 0 0 1 0 By MS/MS 8 0 2 2 50.715 50.802 3 1.6181E-06 14368 20211116_3436_TMUAki_TMT10x_P_F8 95.236 74.848 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9822 1714 9132 52572;52573 63574;63575 63574 2303 2 IYVMATHGILSAEAPR Unmodified 1727.9029 0.9028755 1714 Q14558;Q14558-2 PRPSAP1 Phosphoribosyl pyrophosphate synthase-associated protein 1 yes no 0 0 0 0 By MS/MS 2 0 1 1 59.214 58.982 3 7.2586E-10 17987 20211116_3440_TMUAki_TMT10x_S_F2 110.57 91.827 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9823 1714 9132 52574 63576 63576 1 IYYHVVETGSMGAR Oxidation (M) 1597.7559 0.75587691 2606 Q99805 TM9SF2 Transmembrane 9 superfamily member 2 yes yes 0 0 1 0 By MS/MS 7 0 1 1 36.008 36.442 3 0.0075739 9806 20211116_3435_TMUAki_TMT10x_P_F7 57.434 51.271 144070 238200 0 231990 350740 348670 207150 181360 218790 190020 200450 134130 222240 13790 238850 332630 344240 217990 193090 221420 185220 193940 1 1 0 1 1 1 1 1 1 1 1 144070 238200 0 231990 350740 348670 207150 181360 218790 190020 200450 134130 222240 13790 238850 332630 344240 217990 193090 221420 185220 193940 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25132000 25132000 0 9824 2606 9133 52575 63577 63577 2843 1 IYYPDFIVPDPK Unmodified 1465.7493 0.74931819 1129 P49916;P49916-3;P49916-4;P49916-2 LIG3 DNA ligase 3 yes no 0 0 0 0 By MS/MS 7 0 1 1 83.639 83.648 3 0.092936 29305 20211116_3435_TMUAki_TMT10x_P_F7 36.847 21.581 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9825 1129 9134 52576 63578 63578 1 IYYPDFIVPDPKK Unmodified 1593.8443 0.84428121 1129 P49916;P49916-3;P49916-4;P49916-2 LIG3 DNA ligase 3 yes no 0 0 0 1 By MS/MS 8 0 1 1 69.872 69.954 3 0.0018121 22279 20211116_3436_TMUAki_TMT10x_P_F8 72.089 57.931 5326300 9946100 206500 8536100 6905200 13054000 7980200 7014200 5937900 6335800 7538900 4960900 9275500 656150 8875300 6660500 12884000 7975200 7416100 6186900 6215900 7223000 1 1 1 1 1 1 1 1 1 1 1 5326300 9946100 206500 8536100 6905200 13054000 7980200 7014200 5937900 6335800 7538900 4960900 9275500 656150 8875300 6660500 12884000 7975200 7416100 6186900 6215900 7223000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 636360000 636360000 0 9826 1129 9135 52577 63579 63579 1 KAAAEDVNVTFEDQQK Unmodified 1791.8639 0.86390703 2906 Q9NQP4 PFDN4 Prefoldin subunit 4 yes yes 0 0 0 1 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 44.082 44.233 3 9.8565E-07 11222 20211116_3444_TMUAki_TMT10x_S_F5 101.96 83.124 19936000 31292000 32246 34378000 25379000 25895000 19496000 29272000 31679000 24579000 27125000 18560000 29211000 1526100 34726000 24174000 26979000 20460000 29451000 31533000 24198000 26307000 5 5 1 5 5 5 5 5 5 5 5 6073600 8556900 0 10430000 11432000 13010000 7130000 8061300 8555700 6548400 7635500 5654200 7991500 460210 10547000 10846000 12983000 7501400 8400700 8608900 6457800 7394200 1 1 0 1 1 1 1 1 1 1 1 13862000 22735000 32246 23948000 13947000 12885000 12366000 21211000 23123000 18030000 19489000 12906000 21219000 1065900 24179000 13328000 13996000 12959000 21050000 22924000 17740000 18913000 4 4 1 4 4 4 4 4 4 4 4 1360000000 479750000 880220000 9827 2906 9136 52578;52579;52580 63580;63581;63582;63583;63584 63584 5 KAAALEFLNR Unmodified 1131.64 0.64004252 897 P31948;P31948-2 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 1 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 51.221 51.047 3 0.00018996 17583 20211116_3441_TMUAki_TMT10x_S_F3 112.94 73.916 16353000 26118000 148670 28071000 30685000 35884000 20910000 30181000 30052000 26396000 26481000 15227000 24378000 1655300 28616000 29183000 35946000 22004000 30860000 30046000 25936000 25655000 5 5 3 5 5 5 5 5 5 5 5 10177000 15701000 99366 17046000 25977000 29155000 15410000 18184000 17662000 15865000 15607000 9476400 14656000 1117800 17476000 24646000 28708000 16253000 18973000 17797000 15590000 15119000 3 3 1 3 3 3 3 3 3 3 3 6176000 10416000 49302 11025000 4708100 6728800 5500300 11996000 12390000 10531000 10874000 5750900 9721800 537430 11140000 4537300 7238200 5751000 11887000 12249000 10345000 10537000 2 2 2 2 2 2 2 2 2 2 2 1791900000 1115200000 676660000 9828 897 9137 52581;52582;52583;52584;52585 63585;63586;63587;63588;63589 63589 5 KAAALEFLNRFEEAK Unmodified 1735.9257 0.92571943 897 P31948;P31948-2 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 2 By MS/MS By MS/MS 2 0.632 1 3 1 3 2 69.431 69.242 3;4 9.1218E-30 22105 20211116_3440_TMUAki_TMT10x_S_F2 206.8 178.44 24718000 38082000 367380 38677000 28343000 39850000 27927000 27179000 25361000 27414000 30120000 23018000 35537000 2442400 39433000 27188000 40239000 28270000 28280000 26082000 26764000 28909000 5 5 5 5 5 5 5 5 5 5 5 16885000 26042000 347310 26314000 18462000 32011000 19439000 18638000 17900000 18836000 20598000 15724000 24301000 1745700 26911000 17748000 31959000 19619000 19631000 18374000 18388000 19786000 4 4 4 4 4 4 4 4 4 4 4 7832800 12040000 20071 12363000 9880900 7839000 8488700 8540200 7461000 8577800 9522400 7293200 11236000 696780 12522000 9440500 8280700 8651400 8648900 7708400 8376000 9122100 1 1 1 1 1 1 1 1 1 1 1 3597600000 2168600000 1429000000 9829 897 9138 52586;52587;52588;52589;52590 63590;63591;63592;63593;63594;63595 63594 6 KAAAPAPEEEMDECEQALAAEPK Oxidation (M) 2500.1098 0.10976932 821 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 1 1 By MS/MS By MS/MS 2.5 0.957 2 4 4 2 7 5 43.855 43.785 3;4;5 2.0711E-36 13078 20211116_3430_TMUAki_TMT10x_P_F3 186.06 177.78 12849000 22080000 160170 25456000 23021000 26257000 16073000 24633000 26749000 18824000 20255000 11965000 20615000 1122600 25743000 21904000 26663000 16997000 24953000 26515000 18624000 19740000 19 19 11 19 19 19 19 19 19 19 19 7290100 12794000 118730 14884000 19663000 22807000 13620000 13347000 13525000 10132000 11500000 6788200 11946000 669750 15155000 18705000 22533000 14128000 13951000 13692000 10028000 11156000 12 12 6 12 12 12 12 12 12 12 12 5559300 9285200 41442 10572000 3358000 3449700 2452700 11286000 13224000 8692200 8755100 5176400 8668900 452800 10588000 3198500 4129700 2868600 11002000 12823000 8596100 8584000 7 7 5 7 7 7 7 7 7 7 7 6558400000 3949700000 2608700000 9830 821 9139 52591;52592;52593;52594;52595;52596;52597;52598;52599;52600;52601;52602 63596;63597;63598;63599;63600;63601;63602;63603;63604;63605;63606;63607;63608;63609;63610;63611;63612;63613;63614 63607 989 19 KAAAPAPEEEMDECEQALAAEPK Unmodified 2484.1149 0.1148547 821 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 1 By MS/MS By MS/MS 2.47 0.977 3 6 5 3 8 9 53.213 53.02 3;4;5 2.7618E-36 17292 20211116_3439_TMUAki_TMT10x_S_F1 180.63 172.03 61407000 99291000 383310 111300000 71489000 78030000 65395000 49012000 41606000 47151000 70283000 57177000 92694000 4577800 112200000 68401000 80892000 65915000 51241000 44386000 46127000 66912000 26 26 15 26 26 26 26 26 26 26 26 33791000 51182000 193950 56084000 48792000 59474000 46792000 25026000 21164000 24052000 37924000 31463000 47776000 2310500 56920000 46737000 59605000 46774000 27154000 23246000 23531000 36065000 13 13 7 13 13 13 13 13 13 13 13 27617000 48109000 189350 55215000 22697000 18556000 18603000 23986000 20443000 23098000 32359000 25714000 44917000 2267400 55279000 21664000 21287000 19141000 24086000 21139000 22596000 30846000 13 13 8 13 13 13 13 13 13 13 13 14882000000 9071600000 5810100000 9831 821 9139 52603;52604;52605;52606;52607;52608;52609;52610;52611;52612;52613;52614;52615;52616;52617;52618;52619 63615;63616;63617;63618;63619;63620;63621;63622;63623;63624;63625;63626;63627;63628;63629;63630;63631;63632;63633;63634;63635;63636;63637;63638;63639;63640 63629 26 KAAEAHVDAHYYEQNEQPTGTCAACITGDNR Unmodified 3476.511 0.51097855 1241 P55263;P55263-3;P55263-4;P55263-2 ADK Adenosine kinase yes no 0 0 0 1 By MS/MS By MS/MS 4 0.707 1 2 1 3 1 37.128 37.169 5 4.0221E-27 9752 20211116_3442_TMUAki_TMT10x_S_F4 146.03 141.22 2338800 3896200 0 4473200 6468600 7003000 3702700 3940200 4471500 3146600 3845800 2177700 3637700 7654.6 4560400 6132700 6909300 3924200 4137000 4493200 3105800 3729300 6 6 0 6 6 6 6 6 6 6 6 2244000 3720700 0 4244800 6378200 6920400 3621700 3830300 4367000 3034000 3703800 2089400 3473700 5679.7 4333400 6046400 6815600 3840800 4026500 4386500 2995900 3593500 4 4 0 4 4 4 4 4 4 4 4 94829 175530 0 228340 90400 82601 81000 109950 104530 112610 141990 88281 163990 1974.9 227040 86328 93753 83382 110490 106640 109870 135820 2 2 0 2 2 2 2 2 2 2 2 819190000 746470000 72718000 9832 1241 9140 52620;52621;52622;52623 63641;63642;63643;63644;63645;63646 63645 6 KAAGGATPK Unmodified 799.4552 0.45520186 695 P16403 HIST1H1C Histone H1.2 yes yes 0 0 0 1 By MS/MS 1 0 1 1 23.981 24.086 3 0.072777 6066 20211116_3439_TMUAki_TMT10x_S_F1 45.829 28.889 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9833 695 9141 52624 63647 63647 1 KAAIISAEGDSK Unmodified 1188.635 0.63501672 924 P35232 PHB Prohibitin yes yes 0 0 0 1 By MS/MS 6 0 2 2 35.371 35.352 3 0.00072201 7702 20211116_3434_TMUAki_TMT10x_P_F6 76.759 49.645 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9834 924 9142 52625;52626 63648;63649 63649 2 KAALDEAQGVGLDSTGYYDQEIYGGSDSR Unmodified 3064.3898 0.38976723 345 O75533;O75533-2 SF3B1 Splicing factor 3B subunit 1 yes no 0 0 0 1 By MS/MS By MS/MS 4.25 0.433 3 1 2 2 61.745 61.765 3;4 3.21E-18 19684 20211116_3442_TMUAki_TMT10x_S_F4 123.28 117.67 4785600 8098600 0 8307300 5979700 7033400 5414300 5122100 4911500 5118600 6038400 4455100 7557600 314690 8441000 5713000 7200800 5505900 5304100 5058600 4999200 5790100 3 3 0 3 3 3 3 3 3 3 3 2321400 3998000 0 4115700 3329600 4722500 3204000 2562000 2537600 2739000 2904100 2161300 3731000 182290 4199500 3187900 4725000 3235900 2719200 2623700 2667800 2790100 1 1 0 1 1 1 1 1 1 1 1 2464100 4100600 0 4191600 2650000 2310900 2210300 2560000 2373900 2379600 3134300 2293800 3826600 132400 4241600 2525100 2475800 2270000 2584900 2434900 2331400 3000000 2 2 0 2 2 2 2 2 2 2 2 1630500000 557200000 1073300000 9835 345 9143 52627;52628;52629;52630 63650;63651;63652;63653 63652 4 KAALSASEGEEVPQDKAPSHVPFLLIGGGTAAFAAAR Unmodified 3662.9057 0.90565928 448 O95831;O95831-3;O95831-6;O95831-4 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 0 0 0 2 By MS/MS 2 0 1 1 66.736 66.519 5 4.6073E-11 21064 20211116_3440_TMUAki_TMT10x_S_F2 91.983 84.218 1588200 2822300 89487 2138800 2000400 2172200 2072000 2287700 2063600 2184400 2338500 1479400 2630900 220840 2230700 1925300 2213500 2097700 2317100 2109500 2137700 2247300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1588200 2822300 89487 2138800 2000400 2172200 2072000 2287700 2063600 2184400 2338500 1479400 2630900 220840 2230700 1925300 2213500 2097700 2317100 2109500 2137700 2247300 1 1 1 1 1 1 1 1 1 1 1 309820000 0 309820000 9836 448 9144 52631 63654 63654 1 KAAQVTIQSSGTFSTK Unmodified 1652.8733 0.87334951 30 CON__ENSEMBL:ENSBTAP00000024146 yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 1 3 42.168 41.981 3 1.6716E-07 12368 20211116_3429_TMUAki_TMT10x_P_F2 113.29 94.692 + 1467400 2046100 1868 2427800 2518700 2560400 1866300 2443300 2392000 2191100 2034000 1366200 1910700 126850 2451800 2398000 2597600 1943500 2482600 2397800 2150300 1973200 2 2 1 2 2 2 2 2 2 2 2 1031200 1383400 0 1705500 1992200 2169400 1516800 1640800 1548300 1460400 1313100 960070 1292100 87685 1724100 1897600 2169600 1564400 1689500 1565400 1433700 1274000 1 1 0 1 1 1 1 1 1 1 1 436150 662690 1868 722340 526430 391000 349550 802560 843750 730660 720850 406110 618590 39165 727740 500430 428010 379110 793060 832390 716560 699190 1 1 1 1 1 1 1 1 1 1 1 157640000 75811000 81831000 9837 30 9145 52632;52633;52634;52635 63655;63656;63657 63655 3 KAASITSEVFNK Unmodified 1293.6929 0.69286595 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 49.608 49.694 3 1.8111E-05 13498 20211116_3447_TMUAki_TMT10x_S_F8 96.059 80.793 6855000 11012000 162040 12863000 17898000 15754000 9707300 8303100 8590600 7711100 10063000 6383900 10282000 874000 13035000 16965000 15704000 10240000 8800300 8840600 7555400 9662100 2 2 2 2 2 2 2 2 2 2 2 6855000 11012000 162040 12863000 17898000 15754000 9707300 8303100 8590600 7711100 10063000 6383900 10282000 874000 13035000 16965000 15704000 10240000 8800300 8840600 7555400 9662100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 159640000 159640000 0 9838 3317 9146 52636;52637 63658;63659;63660 63660 3 KAAVGVK Unmodified 671.43301 0.43300985 953 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 0 1 By MS/MS 1 0 1 1 31.061 31.061 3 0.0094933 6420 20211116_3428_TMUAki_TMT10x_P_F1 79.469 19.11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9839 953 9147 52638 63661 63661 1 KACADATLSQITNNIDPVGR Unmodified 2143.0692 0.069165558 1376 P62873;P62873-2 GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 yes no 0 0 0 1 By MS/MS By MS/MS 7.2 0.748 1 2 2 2 3 59.573 59.864 3 7.0711E-32 17560 20211116_3447_TMUAki_TMT10x_S_F8 181.64 170.82 16123000 30055000 72448 22934000 24728000 35204000 22197000 31239000 27088000 27389000 25891000 15010000 28018000 1251800 24083000 23634000 35017000 22799000 31847000 27301000 26908000 25013000 6 6 1 6 6 6 6 6 6 6 6 9552200 16647000 72448 12364000 13148000 24817000 14288000 17698000 15543000 15595000 13938000 8893100 15517000 725630 13102000 12628000 24354000 14472000 18291000 15700000 15318000 13495000 3 3 1 3 3 3 3 3 3 3 3 6570700 13408000 0 10570000 11581000 10387000 7909300 13541000 11545000 11794000 11953000 6117300 12501000 526220 10981000 11006000 10663000 8327200 13556000 11601000 11590000 11518000 3 3 0 3 3 3 3 3 3 3 3 6003500000 2715000000 3288500000 9840 1376 9148 52639;52640;52641;52642;52643 63662;63663;63664;63665;63666;63667 63667 6 KACGDSTLTQITAGLDPVGR Unmodified 2059.0368 0.036802797 1377 P62879 GNB2 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0 3 1 2 59.512 60.094 3 3.5598E-09 19867 20211116_3446_TMUAki_TMT10x_S_F7 114.75 94.382 16972000 28782000 263410 27592000 22043000 27401000 21405000 19899000 17156000 18748000 21914000 15804000 26852000 1712500 28230000 21135000 27757000 21614000 20576000 17808000 18358000 20993000 4 4 3 4 4 4 4 4 4 4 4 10577000 17840000 252180 17242000 13575000 20125000 14806000 11515000 10127000 10477000 13307000 9849800 16644000 1153900 17675000 13063000 20130000 14809000 12111000 10620000 10275000 12739000 2 2 2 2 2 2 2 2 2 2 2 6395200 10942000 11228 10350000 8467400 7276100 6599400 8384700 7029700 8271500 8606900 5954500 10208000 558620 10555000 8071900 7627000 6805000 8465600 7188600 8083000 8253900 2 2 1 2 2 2 2 2 2 2 2 4127200000 1586800000 2540400000 9841 1377 9149 52644;52645;52646 63668;63669;63670;63671 63670 4 KACGNFGIPCELR Unmodified 1520.7228 0.72280264 767 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 0 1 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 46.176 46.349 3 1.9901E-22 12449 20211116_3428_TMUAki_TMT10x_P_F1 176.86 142.81 20121000 35915000 224470 38934000 37897000 40292000 23936000 32083000 31313000 27686000 31710000 18736000 33523000 2105900 39526000 35999000 40779000 25238000 32903000 31547000 27220000 30577000 7 7 5 7 7 7 7 7 7 7 7 11037000 19030000 108290 21267000 30477000 33721000 18514000 16908000 16819000 14879000 16974000 10277000 17766000 1275300 21724000 28928000 33207000 19353000 17979000 17190000 14615000 16369000 3 3 2 3 3 3 3 3 3 3 3 9084800 16884000 116180 17668000 7420400 6571100 5422100 15175000 14494000 12807000 14736000 8459600 15758000 830560 17803000 7071300 7572000 5885200 14924000 14357000 12605000 14208000 4 4 3 4 4 4 4 4 4 4 4 2122000000 1353900000 768190000 9842 767 9150 52647;52648;52649;52650;52651;52652 63672;63673;63674;63675;63676;63677;63678;63679 63672 8 KACYTLTGYQIDITTENQYR Unmodified 2437.1584 0.1583745 3347 Q9Y6D9;Q9Y6D9-3 MAD1L1 Mitotic spindle assembly checkpoint protein MAD1 yes no 0 0 0 1 By MS/MS 8 0 1 1 58.209 58.186 3 2.3068E-07 16906 20211116_3447_TMUAki_TMT10x_S_F8 88 75.727 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9843 3347 9151 52653 63680 63680 1 KADEVLEILK Unmodified 1156.6703 0.67033959 352 O75643;O75643-2 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 0 0 0 1 By MS/MS By MS/MS 6 0.707 1 2 1 2 2 62.474 62.632 3 3.6731E-05 20914 20211116_3446_TMUAki_TMT10x_S_F7 97.121 52.356 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9844 352 9152 52654;52655;52656;52657 63681;63682;63683;63684 63684 4 KADIDLTK Unmodified 902.5073 0.50729701 1345 P62269 RPS18 40S ribosomal protein S18 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 39.39 39.493 3 0.0034965 9337 20211116_3445_TMUAki_TMT10x_S_F6 93.096 39.769 21732000 34519000 160700 35507000 22529000 22813000 20698000 13881000 16318000 15569000 22087000 20236000 32214000 1958900 35963000 21565000 23823000 20955000 14615000 16998000 15136000 21128000 7 7 6 7 7 7 7 7 7 7 7 10289000 16275000 62239 16691000 12927000 13967000 9817100 6111600 7205100 7166200 10268000 9580300 15187000 947960 16957000 12321000 14220000 10040000 6641800 7553000 6955400 9810400 2 2 2 2 2 2 2 2 2 2 2 11443000 18244000 98456 18816000 9601700 8846600 10880000 7769600 9113300 8403000 11819000 10656000 17026000 1011000 19006000 9244400 9603100 10915000 7972900 9444500 8180700 11318000 5 5 4 5 5 5 5 5 5 5 5 690790000 465790000 225000000 9845 1345 9153 52658;52659;52660;52661;52662;52663 63685;63686;63687;63688;63689;63690;63691;63692 63691 8 KADIGVAMGIAGSDVSK Unmodified 1617.8396 0.83960654 497 P05023;P05023-3;P05023-4;P13637;P13637-2;P13637-3 ATP1A1;ATP1A3 Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3 yes no 0 0 0 1 By MS/MS 8 0 1 1 56.734 56.696 3 1.7181E-05 16354 20211116_3447_TMUAki_TMT10x_S_F8 92.492 70.337 6128200 10243000 87077 11476000 6449500 4974500 5675700 4714100 4300000 5083400 7092900 5706600 9562100 593730 11524000 6169900 5462900 5755000 4817200 4533800 4949500 6755800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6128200 10243000 87077 11476000 6449500 4974500 5675700 4714100 4300000 5083400 7092900 5706600 9562100 593730 11524000 6169900 5462900 5755000 4817200 4533800 4949500 6755800 2 2 2 2 2 2 2 2 2 2 2 494770000 0 494770000 9846 497 9154 52664 63693;63694 63693 2 KADPQEAINCLMR Unmodified 1544.7439 0.74393201 1230 P54920 NAPA Alpha-soluble NSF attachment protein yes yes 0 0 0 1 By MS/MS 7 0 1 1 51.783 52.476 3 0.02425 16299 20211116_3435_TMUAki_TMT10x_P_F7 52.527 40.145 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9847 1230 9155 52665 63695 63695 1 KADVEEEFLAFRK Unmodified 1580.8199 0.81985737 1039 P46013;P46013-2 MKI67 Antigen KI-67 yes no 0 0 0 2 By matching By MS/MS 6 0.816 1 1 1 1 2 57.747 57.996 4 7.4153E-06 17153 20211116_3445_TMUAki_TMT10x_S_F6 104.97 74.009 4594800 8092200 26907 7829200 4685600 3789300 3509000 5451600 5279700 5159800 6068200 4278200 7549900 381070 7945300 4463100 4146800 3675700 5450200 5321700 5051400 5829300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4594800 8092200 26907 7829200 4685600 3789300 3509000 5451600 5279700 5159800 6068200 4278200 7549900 381070 7945300 4463100 4146800 3675700 5450200 5321700 5051400 5829300 2 2 1 2 2 2 2 2 2 2 2 1185200000 546010000 639220000 9848 1039 9156 52666;52667;52668 63696;63697 63696 2 KADVEEEFLALR Unmodified 1418.7405 0.74054442 1039 P46013;P46013-2 MKI67 Antigen KI-67 yes no 0 0 0 1 By MS/MS 3.5 0.5 1 1 2 61.469 61.343 3 5.8889E-06 19521 20211116_3442_TMUAki_TMT10x_S_F4 109.84 77.776 2274900 4234600 0 3986600 3213200 2784200 2650800 3483400 3353500 3246100 3530700 2118000 3950400 173670 4066500 3065000 2926300 2740000 3499300 3387200 3180100 3400400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2274900 4234600 0 3986600 3213200 2784200 2650800 3483400 3353500 3246100 3530700 2118000 3950400 173670 4066500 3065000 2926300 2740000 3499300 3387200 3180100 3400400 1 1 0 1 1 1 1 1 1 1 1 484150000 0 484150000 9849 1039 9157 52669;52670 63698;63699 63699 2 KADVEGELLACR Unmodified 1359.6816 0.68164933 1039 P46013;P46013-2 MKI67 Antigen KI-67 yes no 0 0 0 1 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 45.695 45.858 3 4.2528E-05 12705 20211116_3431_TMUAki_TMT10x_P_F4 100.11 76.125 3382500 4819300 67729 5941900 7353100 7160100 4125600 3898800 3605500 3105300 4219200 3149900 4501100 399160 6000700 6973400 7145800 4337400 4104800 3712500 3065500 4051100 1 1 1 1 1 1 1 1 1 1 1 3382500 4819300 67729 5941900 7353100 7160100 4125600 3898800 3605500 3105300 4219200 3149900 4501100 399160 6000700 6973400 7145800 4337400 4104800 3712500 3065500 4051100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 278810000 194390000 84416000 9850 1039 9158 52671;52672;52673 63700;63701 63700 2 KAEAAASALADADADLEER Unmodified 1915.9123 0.91231379 227 O43633 CHMP2A Charged multivesicular body protein 2a yes yes 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 3 1 56.496 56.341 3 5.3034E-31 18696 20211116_3439_TMUAki_TMT10x_S_F1 175.33 160.14 11788000 19180000 139850 21252000 18896000 29350000 16426000 17697000 17185000 16500000 16519000 10977000 17904000 1147900 21656000 18061000 29139000 16814000 18546000 17426000 16165000 15956000 5 5 4 5 5 5 5 5 5 5 5 11788000 19180000 139850 21252000 18896000 29350000 16426000 17697000 17185000 16500000 16519000 10977000 17904000 1147900 21656000 18061000 29139000 16814000 18546000 17426000 16165000 15956000 5 5 4 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1678700000 1678700000 0 9851 227 9159 52674;52675;52676;52677 63702;63703;63704;63705;63706;63707 63707 6 KAEAGAGSATEFQFR Unmodified 1568.7583 0.75831975 1056 P46783;Q9NQ39 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like yes no 0 0 0 1 By MS/MS By MS/MS 4.79 1.47 1 2 3 3 3 2 6 8 39.939 40.075 2;3 3.1613E-36 10756 20211116_3433_TMUAki_TMT10x_P_F5 216.06 189.54 61168000 80984000 316830 131660000 155180000 119380000 70296000 67512000 83411000 58284000 84626000 56952000 75756000 6272100 130550000 146650000 121210000 76149000 70983000 84326000 57303000 81598000 16 16 8 16 16 16 16 16 16 16 16 46096000 59057000 238320 100200000 145660000 111340000 61354000 52066000 64657000 44750000 63660000 42920000 55260000 5218300 99479000 137550000 111400000 66745000 55709000 65597000 44006000 61442000 7 7 5 7 7 7 7 7 7 7 7 15072000 21927000 78509 31458000 9518200 8042000 8941800 15446000 18755000 13535000 20966000 14033000 20496000 1053700 31069000 9104300 9803400 9404000 15274000 18729000 13297000 20157000 9 9 3 9 9 9 9 9 9 9 9 10300000000 7109900000 3190300000 9852 1056 9160 52678;52679;52680;52681;52682;52683;52684;52685;52686;52687;52688;52689;52690;52691 63708;63709;63710;63711;63712;63713;63714;63715;63716;63717;63718;63719;63720;63721;63722;63723;63724;63725 63713 18 KAEAQIAAK Unmodified 928.53418 0.53418046 471 P00505 GOT2 Aspartate aminotransferase, mitochondrial yes yes 0 0 0 1 By MS/MS 5 0 1 1 32.281 32.221 3 0.0014587 7583 20211116_3433_TMUAki_TMT10x_P_F5 83.397 49.319 976810 1339300 0 1545000 1536800 1428800 1141200 731740 706320 774640 1034700 909410 1250500 77366 1559900 1462900 1447100 1164800 780440 749240 754790 987940 1 1 0 1 1 1 1 1 1 1 1 976810 1339300 0 1545000 1536800 1428800 1141200 731740 706320 774640 1034700 909410 1250500 77366 1559900 1462900 1447100 1164800 780440 749240 754790 987940 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39274000 39274000 0 9853 471 9161 52692 63726 63726 1 KAEEIANEMIEAAK Unmodified 1545.7709 0.77085827 1104 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 1 By MS/MS 4 0 1 1 67.264 67.085 3 0.00038847 21874 20211116_3442_TMUAki_TMT10x_S_F4 68.919 49.081 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9854 1104 9162 52693 63727 63727 1 KAEIGIAMGSGTAVAK Oxidation (M) 1518.8076 0.80757813 697 P16615;P16615-5;P16615-2;P16615-3;P16615-4;O14983;O14983-3;O14983-2;Q93084;Q93084-2;Q93084-4;Q93084-3;Q93084-7;Q93084-6;Q93084-5 ATP2A2;ATP2A1;ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1;Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 0 0 1 1 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 40.38 40.718 3 2.0483E-07 11607 20211116_3435_TMUAki_TMT10x_P_F7 106.31 84.256 3114200 4738500 65441 4714300 4678000 5274600 3184700 2785100 3266800 2800500 3716400 2900100 4421500 340740 4819400 4451800 5282900 3311000 2957800 3335800 2734500 3571200 3 3 2 3 3 3 3 3 3 3 3 2620500 3923700 47904 3863300 4111400 4752700 2632200 2305700 2625900 2291200 3100200 2440300 3661000 282450 3958800 3907900 4731900 2747100 2467400 2688500 2238300 2975900 2 2 1 2 2 2 2 2 2 2 2 493740 814820 17536 850990 566590 521900 552540 479400 640910 509250 616220 459860 760450 58298 860680 543980 551020 563930 490460 647270 496130 595210 1 1 1 1 1 1 1 1 1 1 1 295120000 204930000 90198000 9855 697 9163 52694;52695 63728;63729;63730 63728 782 3 KAEIGIAMGSGTAVAK Unmodified 1502.8127 0.81266351 697 P16615;P16615-5;P16615-2;P16615-3;P16615-4;O14983;O14983-3;O14983-2;Q93084;Q93084-2;Q93084-4;Q93084-3;Q93084-7;Q93084-6;Q93084-5 ATP2A2;ATP2A1;ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1;Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 0 0 0 1 By MS/MS 8 0 1 1 48.714 48.808 3 2.8072E-15 13639 20211116_3436_TMUAki_TMT10x_P_F8 137.44 101.14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9856 697 9163 52696 63731 63731 1 KAELLDNEKPAAVVAPITTGYTVK Unmodified 2527.3898 0.38975464 2855 Q9HB71;Q9HB71-3 CACYBP Calcyclin-binding protein yes no 0 0 0 2 By MS/MS By MS/MS 5.73 2.93 3 4 4 6 5 61.157 61.386 4;5 6.3415E-29 20734 20211116_3439_TMUAki_TMT10x_S_F1 164.66 151.61 124280000 217960000 1183700 223980000 164000000 218370000 151170000 157770000 153420000 148520000 163870000 115720000 203410000 9790900 227990000 156920000 221440000 154080000 163190000 156350000 145430000 157750000 16 16 8 16 16 16 16 16 16 16 16 79089000 132660000 1007000 138370000 111770000 171740000 107570000 100760000 97959000 95803000 96495000 73641000 123810000 7263400 141250000 107080000 171300000 109040000 105880000 100030000 93771000 93131000 9 9 6 9 9 9 9 9 9 9 9 45193000 85300000 176700 85615000 52236000 46629000 43604000 57014000 55460000 52713000 67372000 42076000 79595000 2527500 86736000 49839000 50140000 45048000 57315000 56325000 51660000 64622000 7 7 2 7 7 7 7 7 7 7 7 43987000000 27137000000 16850000000 9857 2855 9164 52697;52698;52699;52700;52701;52702;52703;52704;52705;52706;52707 63732;63733;63734;63735;63736;63737;63738;63739;63740;63741;63742;63743;63744;63745;63746;63747 63742 16 KAEPMQWASLELPAAK Oxidation (M) 1784.9131 0.91310583 3117 Q9UHD1;Q9UHD1-2 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 yes no 0 0 1 1 By MS/MS By matching 7 0 2 1 1 57.381 58.009 3 1.7576E-05 18508 20211116_3435_TMUAki_TMT10x_P_F7 93.495 75.131 3425200 5486200 0 5621700 5994300 7291800 5223100 2923900 2489000 3012700 4015200 3188800 5119700 271480 5750500 5725000 7227300 5253700 3195900 2705900 2938700 3826000 1 1 0 1 1 1 1 1 1 1 1 3425200 5486200 0 5621700 5994300 7291800 5223100 2923900 2489000 3012700 4015200 3188800 5119700 271480 5750500 5725000 7227300 5253700 3195900 2705900 2938700 3826000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1232700000 792040000 440690000 9858 3117 9165 52708;52709 63748 63748 3139 1 KAEPMQWASLELPAAK Unmodified 1768.9182 0.91819121 3117 Q9UHD1;Q9UHD1-2 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 yes no 0 0 0 1 By MS/MS 4.5 3.5 1 1 2 64.749 64.723 3 1.0721E-10 19605 20211116_3447_TMUAki_TMT10x_S_F8 132.59 116.47 6887300 12134000 310.17 13676000 8005900 4618500 6638600 4024400 3567100 4015100 7923300 6412800 11328000 586560 13707000 7642100 5250300 6710200 4121400 3917900 3921700 7508500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6887300 12134000 310.17 13676000 8005900 4618500 6638600 4024400 3567100 4015100 7923300 6412800 11328000 586560 13707000 7642100 5250300 6710200 4121400 3917900 3921700 7508500 2 2 1 2 2 2 2 2 2 2 2 556670000 0 556670000 9859 3117 9165 52710;52711 63749;63750;63751 63751 3 KAEQQQREEAGGEAAAAAAAER Unmodified 2241.0734 0.073399313 111 O14497;O14497-2 ARID1A AT-rich interactive domain-containing protein 1A yes no 0 0 0 2 By MS/MS 4 0 1 1 31.087 31.121 4 0.00010176 6805 20211116_3431_TMUAki_TMT10x_P_F4 69.619 54.346 182560 255650 0 300200 481550 387060 211780 185220 244210 155960 255810 169950 238720 14665 304410 454650 384420 229930 197630 247440 153520 246410 1 1 0 1 1 1 1 1 1 1 1 182560 255650 0 300200 481550 387060 211780 185220 244210 155960 255810 169950 238720 14665 304410 454650 384420 229930 197630 247440 153520 246410 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12430000 12430000 0 9860 111 9166 52712 63752 63752 1 KAEVEGK Unmodified 759.41267 0.41266834 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 1 By MS/MS 4.67 0.471 1 2 3 30.021 30.007 3 0.031106 6373 20211116_3431_TMUAki_TMT10x_P_F4 66.435 34.5 921880 1333300 0 1113000 647190 1005700 542540 532770 542830 565700 844660 858330 1243300 68808 1149400 617680 1020500 555800 566540 562940 551140 805470 1 1 0 1 1 1 1 1 1 1 1 921880 1333300 0 1113000 647190 1005700 542540 532770 542830 565700 844660 858330 1243300 68808 1149400 617680 1020500 555800 566540 562940 551140 805470 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 41713000 41713000 0 9861 1474 9167 52713;52714;52715 63753;63754 63753 2 KAEVEGKDLPEHAVLK Unmodified 1761.9625 0.96249887 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 2 By MS/MS 6 0 1 1 40.029 40.046 5 3.132E-07 9448 20211116_3434_TMUAki_TMT10x_P_F6 107.75 81.31 1787600 3229100 4446.1 2669200 8534900 6987900 3375500 6015100 5677900 3535100 4274100 1664400 3011000 246840 2827200 8054200 6830500 3765000 6090600 5625700 3554700 4166500 2 2 2 2 2 2 2 2 2 2 2 1787600 3229100 4446.1 2669200 8534900 6987900 3375500 6015100 5677900 3535100 4274100 1664400 3011000 246840 2827200 8054200 6830500 3765000 6090600 5625700 3554700 4166500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 249560000 249560000 0 9862 1474 9168 52716 63755;63756 63756 2 KAFCEPGNVENNGVLSFIK Unmodified 2122.0517 0.05172458 1219 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 1 By MS/MS 8 0 1 1 67.412 67.532 3 0.00048988 21261 20211116_3436_TMUAki_TMT10x_P_F8 66.874 51.452 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9863 1219 9169 52717 63757 63757 1 KAFPEHLYQR Unmodified 1287.6724 0.67240528 1691 Q14194-2;Q14194 CRMP1 Dihydropyrimidinase-related protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 34.639 34.634 4 0.010419 9795 20211116_3439_TMUAki_TMT10x_S_F1 60.641 44.979 2604700 4025400 56037 4667100 5012800 5056400 2881900 4103900 4445900 3244800 4075100 2425700 3758500 301900 4721700 4756300 5105700 3083100 4194900 4441400 3204400 3942500 2 2 2 2 2 2 2 2 2 2 2 1320300 1897200 8507.7 2260900 3793500 3888300 1856100 2083000 2201100 1535200 1830300 1229400 1771700 152030 2305200 3589200 3820200 1994700 2192600 2211000 1521900 1777100 1 1 1 1 1 1 1 1 1 1 1 1284400 2128100 47530 2406200 1219200 1168000 1025900 2020800 2244900 1709600 2244800 1196200 1986800 149870 2416500 1167100 1285400 1088400 2002300 2230400 1682500 2165400 1 1 1 1 1 1 1 1 1 1 1 277740000 169280000 108460000 9864 1691 9170 52718;52719 63758;63759 63759 2 KAFSGYLGTDQSK Unmodified 1400.6936 0.69359423 612 P10768 ESD S-formylglutathione hydrolase yes yes 0 0 0 1 By MS/MS By MS/MS 5.67 3.3 1 2 2 1 45.092 45.124 3 7.338E-23 12145 20211116_3436_TMUAki_TMT10x_P_F8 209.53 144.65 3147200 5259000 28264 6405200 12005000 7491200 4623800 6110500 7087000 4271100 6081700 2930500 4911500 404180 6469700 11326000 7533600 5152300 6227400 7066300 4247200 5897900 3 3 2 3 3 3 3 3 3 3 3 1948400 3335500 13161 4057100 10737000 6515800 3464000 3864600 4566400 2687300 3757800 1814200 3115100 289750 4124700 10112000 6426600 3928100 4027800 4568600 2673100 3650100 2 2 1 2 2 2 2 2 2 2 2 1198800 1923500 15103 2348100 1267900 975430 1159800 2245900 2520600 1583800 2323800 1116300 1796400 114430 2344900 1213900 1106900 1224200 2199600 2497700 1574100 2247800 1 1 1 1 1 1 1 1 1 1 1 470120000 380510000 89605000 9865 612 9171 52720;52721;52722 63760;63761;63762 63761 3 KAGEIWK Unmodified 830.46504 0.46503826 1550 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 0 1 By MS/MS 7 0 1 1 38.635 39.073 3 0.045172 10983 20211116_3435_TMUAki_TMT10x_P_F7 58.981 15.734 720220 1165600 0 1272100 1395600 1255700 1068800 513070 586120 559460 893600 670530 1088100 61599 1290000 1329500 1263600 1086300 560530 628320 544490 852500 1 1 0 1 1 1 1 1 1 1 1 720220 1165600 0 1272100 1395600 1255700 1068800 513070 586120 559460 893600 670530 1088100 61599 1290000 1329500 1263600 1086300 560530 628320 544490 852500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24666000 24666000 0 9866 1550 9172 52723 63763 63763 1 KAGFFLPPDEYVVTDPEQEK Unmodified 2308.1263 0.12632931 1720 Q14676;Q14676-2;Q14676-3;Q14676-4 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 0 1 By MS/MS 6 0 1 1 69.139 69.055 3 0.0041704 21669 20211116_3445_TMUAki_TMT10x_S_F6 56.719 47.899 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9867 1720 9173 52724 63764 63764 1 KAGKLDPHLVLDQLR Unmodified 1701.989 0.98898839 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 2 By MS/MS 2 0 2 2 51.627 51.46 4;5 0.0012981 14953 20211116_3440_TMUAki_TMT10x_S_F2 72.634 51.971 4555200 7528900 93388 8706500 4443900 3599300 3909500 5734200 5572400 5151900 5979900 4242100 7029700 463140 8722500 4253300 4029700 4045000 5704900 5610700 5055600 5755900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4555200 7528900 93388 8706500 4443900 3599300 3909500 5734200 5572400 5151900 5979900 4242100 7029700 463140 8722500 4253300 4029700 4045000 5704900 5610700 5055600 5755900 2 2 2 2 2 2 2 2 2 2 2 314710000 0 314710000 9868 934 9174 52725;52726 63765;63766 63766 2 KAGNFYVPAEPK Unmodified 1319.6874 0.68738664 716 P18124 RPL7 60S ribosomal protein L7 yes yes 0 0 0 1 By MS/MS By MS/MS 6.2 2.64 2 4 4 5 5 44.023 44.258 3;4 5.6125E-06 11745 20211116_3436_TMUAki_TMT10x_P_F8 106.01 87.227 17348000 25322000 263850 36419000 59432000 40620000 23835000 25732000 28780000 18276000 29673000 16155000 23669000 2273600 36432000 56107000 40787000 26191000 26691000 29094000 18157000 28597000 9 9 9 9 9 9 9 9 9 9 9 13030000 18333000 199570 26575000 55963000 37473000 20345000 19262000 21848000 13562000 22633000 12133000 17137000 1867600 26692000 52777000 37093000 22545000 20333000 22189000 13481000 21809000 5 5 5 5 5 5 5 5 5 5 5 4318500 6988900 64279 9844100 3468200 3147000 3490300 6470100 6931400 4713800 7039900 4021400 6532000 406030 9740800 3329900 3693800 3645700 6358100 6904800 4676100 6787800 4 4 4 4 4 4 4 4 4 4 4 3927400000 2981900000 945420000 9869 716 9175 52727;52728;52729;52730;52731;52732;52733;52734;52735;52736 63767;63768;63769;63770;63771;63772;63773;63774;63775;63776 63772 10 KAGQVFLEELGNHK Unmodified 1568.8311 0.83109076 581 P09543;P09543-2 CNP 2',3'-cyclic-nucleotide 3'-phosphodiesterase yes no 0 0 0 1 By MS/MS 8 0 1 1 51.665 51.751 4 1.6729E-05 14866 20211116_3436_TMUAki_TMT10x_P_F8 100.45 84.147 3495200 4253000 0 4997700 4318800 5130300 2804200 2648500 2315400 2575900 3542100 3253600 3971300 203310 5047800 4096600 5162500 2908500 2815900 2420500 2518700 3379000 1 1 0 1 1 1 1 1 1 1 1 3495200 4253000 0 4997700 4318800 5130300 2804200 2648500 2315400 2575900 3542100 3253600 3971300 203310 5047800 4096600 5162500 2908500 2815900 2420500 2518700 3379000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 309140000 309140000 0 9870 581 9176 52737 63777 63777 1 KAGTQIENIDEDFRDGLK Unmodified 2048.0174 0.017447563 235 O43707;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 2 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 53.716 53.771 4 1.0368E-05 15088 20211116_3444_TMUAki_TMT10x_S_F5 90.968 78.477 16493000 27068000 131030 25366000 23957000 37490000 20809000 25409000 22445000 22480000 23694000 15357000 25251000 1571100 26179000 22899000 37173000 21323000 26356000 22807000 22076000 22818000 4 4 3 4 4 4 4 4 4 4 4 13447000 21491000 126620 20584000 20848000 34048000 18234000 20626000 18416000 18150000 18951000 12521000 20050000 1313600 21265000 19931000 33554000 18638000 21574000 18746000 17828000 18264000 3 3 2 3 3 3 3 3 3 3 3 3046100 5577300 4401.4 4781200 3109300 3441300 2574400 4783000 4029400 4330100 4743400 2836200 5201200 257530 4913800 2968100 3618600 2684400 4781700 4060900 4247700 4553700 1 1 1 1 1 1 1 1 1 1 1 1658400000 648440000 1009900000 9871 235 9177 52738;52739;52740;52741 63778;63779;63780 63780 3 KAGTQIENIEEDFRDGLK Unmodified 2062.0331 0.033097627 644 P12814;P12814-2;P12814-3;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 2 By MS/MS 4 0 1 1 61.047 60.922 4 5.9067E-17 19346 20211116_3442_TMUAki_TMT10x_S_F4 141.97 126.2 3057000 4841200 50753 4608800 3973400 3352800 3117600 4142900 3568700 3829700 4026300 2846700 4516500 313580 4699400 3791400 3510900 3221100 4162900 3627000 3753200 3869900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3057000 4841200 50753 4608800 3973400 3352800 3117600 4142900 3568700 3829700 4026300 2846700 4516500 313580 4699400 3791400 3510900 3221100 4162900 3627000 3753200 3869900 1 1 1 1 1 1 1 1 1 1 1 545680000 0 545680000 9872 644 9178 52742 63781 63781 1 KAHEILPNLVCCSAK Unmodified 1738.8858 0.88584523 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 1 By MS/MS By MS/MS 2.82 2.48 3 6 2 6 5 44.871 44.773 3;4;5 1.8071E-14 11805 20211116_3428_TMUAki_TMT10x_P_F1 151.56 139.94 18283000 29259000 151160 34695000 35539000 33753000 20649000 28618000 24352000 24694000 27587000 17024000 27322000 1827200 34997000 33707000 34328000 21838000 29239000 24727000 24279000 26512000 12 12 8 12 12 12 12 12 12 12 12 9415800 14436000 65494 17497000 29460000 27562000 15151000 14765000 12059000 12588000 14081000 8767400 13481000 1104100 17784000 27891000 27170000 16020000 15593000 12475000 12384000 13521000 6 6 4 6 6 6 6 6 6 6 6 8866900 14824000 85665 17199000 6079100 6191200 5498300 13853000 12293000 12106000 13506000 8256100 13841000 723080 17213000 5816100 7158300 5817900 13646000 12252000 11896000 12991000 6 6 4 6 6 6 6 6 6 6 6 5924300000 4247100000 1677200000 9873 1146 9179 52743;52744;52745;52746;52747;52748;52749;52750;52751;52752;52753 63782;63783;63784;63785;63786;63787;63788;63789;63790;63791;63792;63793;63794 63782 13 KAHLMEIQVNGGTVAEK Oxidation (M) 1839.9513 0.95128225 975 P39023 RPL3 60S ribosomal protein L3 yes yes 0 0 1 1 By MS/MS By MS/MS 7 0 2 1 1 37.779 38.339 4 9.9813E-08 10961 20211116_3446_TMUAki_TMT10x_S_F7 110.22 86.385 399330 632510 6224.3 783990 595340 536360 398440 350140 361450 304810 454210 371850 590770 39831 785400 566150 557500 413310 364040 372620 299560 435280 2 2 1 2 2 2 2 2 2 2 2 250710 389010 0 458170 466050 446060 262730 255270 261360 209810 273690 233420 363250 21980 462350 441640 450870 277080 267810 266390 206790 263640 1 1 0 1 1 1 1 1 1 1 1 148620 243500 6224.3 325820 129300 90304 135720 94870 100080 94996 180520 138430 227520 17852 323050 124510 106630 136220 96230 106230 92772 171650 1 1 1 1 1 1 1 1 1 1 1 45730000 27080000 18650000 9874 975 9180 52754;52755 63795;63796 63796 1249 2 KAHLMEIQVNGGTVAEK Unmodified 1823.9564 0.95636763 975 P39023 RPL3 60S ribosomal protein L3 yes yes 0 0 0 1 By MS/MS By MS/MS 7.25 0.433 3 1 2 2 43.644 43.977 3;4 1.4762E-06 13142 20211116_3446_TMUAki_TMT10x_S_F7 101.13 82.766 1892500 3084000 78968 3674500 1422400 1290500 1329800 2523500 2838200 2099100 2697100 1762700 2879900 219420 3671300 1366100 1489400 1400500 2490800 2816300 2067600 2606100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1892500 3084000 78968 3674500 1422400 1290500 1329800 2523500 2838200 2099100 2697100 1762700 2879900 219420 3671300 1366100 1489400 1400500 2490800 2816300 2067600 2606100 2 2 1 2 2 2 2 2 2 2 2 796250000 607640000 188610000 9875 975 9180 52756;52757;52758;52759 63797;63798;63799 63798 3 KAIIIFVPVPQLK Unmodified 1464.9432 0.9432074 1332 P62081 RPS7 40S ribosomal protein S7 yes yes 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 76.636 76.667 3 7.7086E-05 25052 20211116_3436_TMUAki_TMT10x_P_F8 96.745 96.745 48747000 80540000 970850 70106000 54864000 68895000 56874000 46278000 41344000 47291000 53560000 45396000 75114000 5031900 72239000 52715000 69753000 57104000 48224000 43174000 46145000 51289000 6 6 6 6 6 6 6 6 6 6 6 22844000 36601000 499090 31058000 23665000 43302000 26800000 22281000 20011000 23698000 24871000 21274000 34132000 2370600 32259000 22800000 42885000 26810000 23757000 20827000 23086000 23842000 3 3 3 3 3 3 3 3 3 3 3 25903000 43940000 471760 39049000 31199000 25594000 30074000 23997000 21333000 23593000 28688000 24122000 40982000 2661400 39980000 29916000 26867000 30294000 24467000 22347000 23059000 27447000 3 3 3 3 3 3 3 3 3 3 3 5778600000 3023100000 2755500000 9876 1332 9181 52760;52761;52762;52763 63800;63801;63802;63803;63804;63805 63802 6 KALAAAGYDVEK Unmodified 1234.6558 0.65575216 606;695;694 P10412;Q02539;P22492;P16403;P16402 HIST1H1E;HIST1H1A;HIST1H1T;HIST1H1C;HIST1H1D Histone H1.4;Histone H1.1;Histone H1t;Histone H1.2;Histone H1.3 no no 0 0 0 1 By MS/MS By MS/MS 6.78 0.916 1 2 4 2 4 5 42.64 42.927 3 8.4122E-09 10725 20211116_3447_TMUAki_TMT10x_S_F8 141.46 99.423 57031000 89828000 1460400 92424000 96723000 100960000 69681000 58094000 62896000 61039000 72280000 53107000 83829000 5873800 94232000 92109000 101360000 71884000 61317000 64616000 59493000 69436000 12 12 8 12 12 12 12 12 12 12 12 43567000 68204000 1301300 70816000 83766000 88557000 53875000 43628000 46899000 46919000 54689000 40570000 63651000 4767100 72324000 79606000 88112000 55995000 46724000 48293000 45688000 52515000 5 5 3 5 5 5 5 5 5 5 5 13464000 21624000 159100 21608000 12957000 12401000 15806000 14465000 15997000 14120000 17591000 12537000 20178000 1106700 21907000 12504000 13247000 15889000 14593000 16323000 13805000 16920000 7 7 5 7 7 7 7 7 7 7 7 3741200000 2126100000 1615200000 9877 606;695;694 9182 52764;52765;52766;52767;52768;52769;52770;52771;52772 63806;63807;63808;63809;63810;63811;63812;63813;63814;63815;63816;63817;63818;63819 63818 14 KALAAGGYDVEK Unmodified 1220.6401 0.6401021 693 P16401 HIST1H1B Histone H1.5 yes yes 0 0 0 1 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 39.957 40.164 3 3.3106E-09 9563 20211116_3445_TMUAki_TMT10x_S_F6 152.99 102.85 3397400 5348600 84232 5129500 8129300 6580700 4142600 3704900 4421500 3434100 4572700 3163900 4990000 426440 5270100 7699600 6549800 4419100 3903900 4491300 3365100 4406500 3 3 3 3 3 3 3 3 3 3 3 3144500 4951300 79514 4738600 7840400 6378900 3851000 3446000 4135200 3188400 4236900 2928400 4619300 400570 4873700 7422200 6331300 4123600 3644000 4198100 3124600 4084000 2 2 2 2 2 2 2 2 2 2 2 252860 397340 4718.8 390830 288880 201810 291630 258850 286230 245650 335830 235480 370730 25866 396340 277350 218530 295510 259910 293190 240460 322430 1 1 1 1 1 1 1 1 1 1 1 331130000 282960000 48175000 9878 693 9183 52773;52774;52775 63820;63821;63822 63822 3 KALDIAENEMPGLMR 2 Oxidation (M) 1718.8331 0.83314095 786 P23526 AHCY Adenosylhomocysteinase yes yes 0 0 2 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 45.193 45.32 3 0.0088692 12764 20211116_3433_TMUAki_TMT10x_P_F5 53.981 42.719 4935000 7883600 5643.1 8449600 13050000 16832000 7743600 11712000 12880000 8392400 8870200 4594900 7358400 508040 8705400 12379000 16515000 8291200 12067000 12737000 8333200 8680900 3 3 1 3 3 3 3 3 3 3 3 4935000 7883600 5643.1 8449600 13050000 16832000 7743600 11712000 12880000 8392400 8870200 4594900 7358400 508040 8705400 12379000 16515000 8291200 12067000 12737000 8333200 8680900 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1501800000 1501800000 0 9879 786 9184 52776;52777;52778 63823;63824;63825;63826 63825 924;925 4 KALDIAENEMPGLMR Oxidation (M) 1702.8382 0.83822633 786 P23526 AHCY Adenosylhomocysteinase yes yes 0 0 1 1 By MS/MS 5 0 1 1 56.968 57.162 3 0.011351 17550 20211116_3433_TMUAki_TMT10x_P_F5 54.7 42.907 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9880 786 9184 52779 63827 63827 924;925 1 KALDIAENEMPGLMR Unmodified 1686.8433 0.84331171 786 P23526 AHCY Adenosylhomocysteinase yes yes 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 63.936 63.923 3 1.7929E-06 19576 20211116_3445_TMUAki_TMT10x_S_F6 106.82 85.469 13869000 23194000 204600 23533000 17554000 19261000 16833000 15663000 13975000 14591000 17136000 12915000 21643000 1392100 23920000 16826000 19804000 17024000 16075000 14455000 14295000 16432000 2 2 2 2 2 2 2 2 2 2 2 6481500 10675000 103080 10667000 8742300 13357000 9893900 8504200 7369500 7406300 8435600 6035700 9961100 665090 10923000 8417700 13332000 9897500 8858500 7645500 7278700 8104500 1 1 1 1 1 1 1 1 1 1 1 7387700 12518000 101520 12866000 8811500 5904000 6938900 7158800 6605900 7184900 8700000 6879400 11682000 727050 12997000 8407900 6472200 7126100 7216000 6809300 7016100 8327800 1 1 1 1 1 1 1 1 1 1 1 705360000 324470000 380890000 9881 786 9184 52780;52781 63828;63829 63829 2 KALDQFVNFSEQK Unmodified 1552.7886 0.78855725 3219 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 1 By MS/MS 8 0 1 1 61.627 61.632 3 0.022324 18298 20211116_3447_TMUAki_TMT10x_S_F8 53.777 38.523 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9882 3219 9185 52782 63830 63830 1 KALVLDCHYPEDEVGQEDEAESDIFSIR Unmodified 3263.4929 0.4928521 1535 Q07021 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes yes 0 0 0 1 By MS/MS 2 0 1 1 69.035 68.734 4 8.9719E-13 23170 20211116_3429_TMUAki_TMT10x_P_F2 109.98 103.62 1226800 2315300 30795 1607600 1208300 2803600 1121900 1576000 1419000 1742600 1617700 1142500 2157800 130150 1707900 1158300 2754800 1151700 1669300 1437600 1695100 1554400 1 1 1 1 1 1 1 1 1 1 1 1226800 2315300 30795 1607600 1208300 2803600 1121900 1576000 1419000 1742600 1617700 1142500 2157800 130150 1707900 1158300 2754800 1151700 1669300 1437600 1695100 1554400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 894070000 894070000 0 9883 1535 9186 52783 63831 63831 1 KAMEAVAAQGK Oxidation (M) 1118.5754 0.57539335 722 P18669;P15259 PGAM1;PGAM2 Phosphoglycerate mutase 1;Phosphoglycerate mutase 2 yes no 0 0 1 1 By MS/MS 5 0 1 1 30.653 30.589 3 0.008395 6925 20211116_3433_TMUAki_TMT10x_P_F5 64.827 49.255 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9884 722 9187 52784 63832 63832 828 1 KANLQIDQINTDLNLER Unmodified 1997.0542 0.054167421 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 58.062 58.168 3 5.2793E-30 17163 20211116_3445_TMUAki_TMT10x_S_F6 197.1 183.35 18398000 31749000 182920 31938000 23650000 29857000 20233000 24125000 23932000 22337000 25036000 17131000 29626000 1731100 32538000 22600000 30416000 20816000 24765000 24224000 21890000 24118000 6 6 5 6 6 6 6 6 6 6 6 9467800 15816000 39702 15953000 13989000 21364000 12031000 12387000 12209000 11477000 12294000 8815500 14759000 847020 16346000 13364000 21228000 12311000 13020000 12416000 11246000 11857000 3 3 2 3 3 3 3 3 3 3 3 8929800 15933000 143210 15985000 9661200 8493400 8201900 11739000 11723000 10860000 12742000 8315600 14867000 884060 16192000 9235600 9187600 8504800 11745000 11808000 10643000 12260000 3 3 3 3 3 3 3 3 3 3 3 2804700000 1489300000 1315400000 9885 934 9188 52785;52786;52787;52788 63833;63834;63835;63836;63837;63838 63838 6 KANPDLPILIR Unmodified 1248.7554 0.75540662 232 O43678;O43678-2 NDUFA2 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 yes no 0 0 0 1 By MS/MS 1 0 1 1 51.852 51.571 3 0.10053 16724 20211116_3439_TMUAki_TMT10x_S_F1 37.793 24.44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9886 232 9189 52789 63839 63839 1 KANYAVDAYFR Unmodified 1316.6513 0.65133548 260;844 P28370-2;P28370;O60264 SMARCA1;SMARCA5 Probable global transcription activator SNF2L1;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 no no 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 46.532 46.468 3 7.8936E-08 12512 20211116_3428_TMUAki_TMT10x_P_F1 118.76 102.14 8040700 13883000 78024 13304000 13143000 15667000 8946900 16995000 16216000 13015000 13778000 7486800 12952000 745700 13648000 12497000 15844000 9519700 17093000 16092000 12875000 13367000 5 5 3 5 5 5 5 5 5 5 5 3557000 5921900 16032 5610600 8299300 11239000 5228800 7364700 7143900 5627100 5776600 3311800 5524600 340860 5829900 7879200 11016000 5523700 7631500 7135400 5567300 5614800 2 2 1 2 2 2 2 2 2 2 2 4483700 7960800 61993 7693300 4843700 4427200 3718100 9630500 9071700 7388300 8001900 4175000 7427300 404840 7818500 4617900 4828500 3996000 9461900 8956700 7308200 7752300 3 3 2 3 3 3 3 3 3 3 3 358240000 181090000 177150000 9887 844;260 9190 52790;52791;52792;52793 63840;63841;63842;63843;63844;63845 63840 6 KAPAQKVPAQK Unmodified 1164.6979 0.69789175 1145 P50914 RPL14 60S ribosomal protein L14 yes yes 0 0 0 2 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 30.288 30.042 4 3.4007E-05 9065 20211116_3441_TMUAki_TMT10x_S_F3 101.93 79.883 538020 944830 4117.5 608390 665270 874290 654820 531300 567610 509980 661380 500980 880370 49698 648400 637840 866560 662060 556860 584590 498950 635110 2 2 1 2 2 2 2 2 2 2 2 345290 586440 0 396470 416700 634460 442360 340790 361180 314740 411830 321490 546500 29100 421440 400160 625070 444850 360530 372790 308470 395710 1 1 0 1 1 1 1 1 1 1 1 192740 358400 4117.5 211920 248570 239830 212460 190510 206430 195240 249550 179490 333870 20598 226960 237680 241490 217210 196330 211800 190490 239400 1 1 1 1 1 1 1 1 1 1 1 55385000 22683000 32702000 9888 1145 9191 52794;52795 63846;63847 63847 2 KAPDFVFYAPR Unmodified 1309.6819 0.68190733 682;926 P15311;P26038;P35241-4;P35241;P35241-5 EZR;MSN;RDX Ezrin;Moesin;Radixin no no 0 0 0 1 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 54.235 54.12 3 1.5089E-06 17221 20211116_3429_TMUAki_TMT10x_P_F2 126.12 91.231 32261000 54958000 204310 62176000 52084000 60165000 39173000 42636000 42035000 39066000 45167000 30038000 51308000 2979900 62890000 49618000 61022000 40498000 44127000 42749000 38301000 43474000 6 6 3 6 6 6 6 6 6 6 6 19671000 34194000 148510 38341000 39430000 50776000 29469000 26462000 26701000 24807000 27161000 18316000 31922000 1921800 39007000 37557000 50414000 30326000 28082000 27301000 24296000 26187000 4 4 2 4 4 4 4 4 4 4 4 12590000 20764000 55801 23835000 12655000 9389400 9703900 16175000 15334000 14259000 18006000 11722000 19386000 1058200 23883000 12061000 10609000 10172000 16045000 15448000 14005000 17287000 2 2 1 2 2 2 2 2 2 2 2 4716500000 2868300000 1848200000 9889 682;926 9192 52796;52797;52798;52799;52800;52801 63848;63849;63850;63851;63852;63853 63850 6 KAPGFGGFGSSAVSGGSTAAMITETIIETDKPK Oxidation (M) 3227.602 0.60200861 1072 P48444;P48444-2 ARCN1 Coatomer subunit delta yes no 0 0 1 2 By MS/MS 4.5 3.5 1 1 2 75.671 75.58 5;6 1.4704E-27 26355 20211116_3439_TMUAki_TMT10x_S_F1 141.84 129.19 5147200 8969500 65848 7301700 6831200 6959800 6333400 6737800 6560800 6807100 6844800 4793100 8363300 511690 7561600 6541600 7106300 6457300 6863900 6674700 6645300 6594200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5147200 8969500 65848 7301700 6831200 6959800 6333400 6737800 6560800 6807100 6844800 4793100 8363300 511690 7561600 6541600 7106300 6457300 6863900 6674700 6645300 6594200 2 2 2 2 2 2 2 2 2 2 2 2585800000 0 2585800000 9890 1072 9193 52802;52803 63854;63855 63854 1395 2 KAPGGPMLLPQTYGAR Oxidation (M) 1671.8767 0.87666075 1753 Q15020;Q15020-4 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 0 0 1 1 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 43.161 42.97 3 0.00035005 12840 20211116_3430_TMUAki_TMT10x_P_F3 73.208 53.937 1169300 1875400 49495 2170500 2042400 2050900 1356700 1951800 2210100 1630900 1838700 1089100 1751000 151950 2191600 1943900 2094500 1438400 1979900 2197900 1606000 1785200 3 3 2 3 3 3 3 3 3 3 3 469140 756910 9725.2 892160 1462900 1422700 752360 758010 953150 692270 742410 436860 706780 58528 908530 1385200 1401700 806520 802270 953400 678820 722700 2 2 1 2 2 2 2 2 2 2 2 700200 1118500 39770 1278300 579550 628170 604350 1193800 1256900 938610 1096300 652250 1044200 93426 1283100 558730 692750 631920 1177600 1244400 927210 1062500 1 1 1 1 1 1 1 1 1 1 1 240540000 128890000 111660000 9891 1753 9194 52804;52805;52806 63856;63857;63858 63856 2366 3 KAPPDGWELIEPTLDELDQK Unmodified 2293.1478 0.14779303 996 P41223;P41223-2 BUD31 Protein BUD31 homolog yes no 0 0 0 1 By MS/MS 3 0 1 1 78.331 78.246 3 0.061691 27526 20211116_3430_TMUAki_TMT10x_P_F3 37.683 27.09 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9892 996 9195 52807 63859 63859 1 KAPVISSTPK Unmodified 1026.6073 0.6073454 3358 Q9Y6X9;Q9Y6X9-2 MORC2 MORC family CW-type zinc finger protein 2 yes no 0 0 0 1 By MS/MS 1 0 1 1 34.231 34.231 3 0.00019073 7657 20211116_3428_TMUAki_TMT10x_P_F1 86.114 48.028 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9893 3358 9196 52808 63860 63860 1 KAQCPIVER Unmodified 1099.5808 0.58081308 1055 P46782 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes yes 0 0 0 1 By MS/MS 5 0 1 1 29.978 29.911 3 0.0011014 6668 20211116_3433_TMUAki_TMT10x_P_F5 91.549 65.035 259890 479960 12807 369250 533480 746210 408590 411400 378440 374420 429790 242080 447440 37315 390150 509160 729410 420040 434070 388140 367200 413010 1 1 1 1 1 1 1 1 1 1 1 259890 479960 12807 369250 533480 746210 408590 411400 378440 374420 429790 242080 447440 37315 390150 509160 729410 420040 434070 388140 367200 413010 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21157000 21157000 0 9894 1055 9197 52809 63861 63861 1 KAQDVLVQEMEVVK Unmodified 1614.8651 0.86509301 2574 Q99459 CDC5L Cell division cycle 5-like protein yes yes 0 0 0 1 By MS/MS 5 0 1 1 62.348 62.428 3 0.018384 18619 20211116_3444_TMUAki_TMT10x_S_F5 52.254 32.415 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9895 2574 9198 52810 63862 63862 1 KAQLNIGNVLPVGTMPEGTIVCCLEEKPGDR Unmodified 3394.7047 0.70471632 1384 P62917 RPL8 60S ribosomal protein L8 yes yes 0 0 0 2 By MS/MS By MS/MS 6.11 2.77 2 3 4 5 4 76.139 76.15 4;5 4.9079E-38 24264 20211116_3447_TMUAki_TMT10x_S_F8 179.86 177.28 55401000 91073000 367720 84836000 58758000 62793000 63695000 32744000 27564000 35717000 57532000 51585000 84957000 4767100 86658000 56472000 64654000 63232000 34897000 30686000 34761000 54571000 11 11 6 11 11 11 11 11 11 11 11 25936000 41219000 104840 37767000 23378000 36071000 29185000 13837000 11847000 15982000 25987000 24149000 38449000 2103800 38747000 22561000 36352000 28763000 15255000 13313000 15521000 24631000 5 5 2 5 5 5 5 5 5 5 5 29465000 49854000 262880 47069000 35380000 26722000 34510000 18907000 15717000 19735000 31545000 27436000 46508000 2663300 47911000 33911000 28302000 34469000 19642000 17373000 19240000 29940000 6 6 4 6 6 6 6 6 6 6 6 22819000000 12520000000 10300000000 9896 1384 9199 52811;52812;52813;52814;52815;52816;52817;52818;52819 63863;63864;63865;63866;63867;63868;63869;63870;63871;63872 63868 10 KAQLNIGNVLPVGTMPEGTIVCCLEEKPGDR Oxidation (M) 3410.6996 0.69963094 1384 P62917 RPL8 60S ribosomal protein L8 yes yes 0 0 1 2 By MS/MS By MS/MS 7.43 0.495 4 3 3 4 71.818 71.932 4;5 2.9552E-20 24894 20211116_3446_TMUAki_TMT10x_S_F7 128.06 126 38959000 66528000 306530 58168000 51861000 56642000 49908000 47098000 42734000 47549000 50804000 36274000 62047000 3396400 59909000 49677000 57583000 50504000 48381000 44075000 46420000 48759000 16 16 8 16 16 16 16 16 16 16 16 7371100 11561000 92038 10565000 6755700 14638000 7993000 8518700 7649000 8168000 8920700 6863700 10784000 662020 10910000 6512700 14523000 8032300 8959500 7841700 7991800 8566100 3 3 2 3 3 3 3 3 3 3 3 31587000 54967000 214490 47603000 45105000 42005000 41915000 38579000 35085000 39381000 41883000 29410000 51263000 2734400 48999000 43164000 43060000 42472000 39421000 36233000 38428000 40193000 13 13 6 13 13 13 13 13 13 13 13 10216000000 4887300000 5328200000 9897 1384 9199 52820;52821;52822;52823;52824;52825;52826 63873;63874;63875;63876;63877;63878;63879;63880;63881;63882;63883;63884;63885;63886;63887;63888 63880 1856 16 KAQNIMESFENPFR Oxidation (M) 1725.8145 0.81445442 1486 Q01780;Q01780-2 EXOSC10 Exosome component 10 yes no 0 0 1 1 By MS/MS 7 0 1 1 51.261 51.934 3 0.012017 16066 20211116_3435_TMUAki_TMT10x_P_F7 53.377 35.275 3389500 5772700 0 5465500 5154100 7727700 4070100 5256500 5063500 4414700 4584100 3155600 5385400 255630 5631300 4911500 7677400 4215900 5444000 5090800 4346300 4437000 1 1 0 1 1 1 1 1 1 1 1 3389500 5772700 0 5465500 5154100 7727700 4070100 5256500 5063500 4414700 4584100 3155600 5385400 255630 5631300 4911500 7677400 4215900 5444000 5090800 4346300 4437000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 314540000 314540000 0 9898 1486 9200 52827 63889 63889 2013 1 KASDVHEVR Unmodified 1039.5411 0.54105675 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 1 By MS/MS 3 0 1 1 25.41 25.11 3 0.029233 7187 20211116_3441_TMUAki_TMT10x_S_F3 55.426 17.704 39479 62969 0 43742 51052 52230 50819 59072 41644 49887 58275 36759 58685 0 46109 48946 52839 51276 59440 43357 49101 55701 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39479 62969 0 43742 51052 52230 50819 59072 41644 49887 58275 36759 58685 0 46109 48946 52839 51276 59440 43357 49101 55701 1 1 0 1 1 1 1 1 1 1 1 1904300 0 1904300 9899 670;671 9201 52828 63890 63890 1 KASGPPVSELITK Unmodified 1325.7555 0.7554662 606;695;694 P10412;P16403;P16402 HIST1H1E;HIST1H1C;HIST1H1D Histone H1.4;Histone H1.2;Histone H1.3 no no 0 0 0 1 By MS/MS By MS/MS 6.17 2.41 1 1 2 2 2 4 47.581 47.751 3 3.696E-15 12618 20211116_3447_TMUAki_TMT10x_S_F8 176.19 132.52 13373000 25450000 231610 21333000 41129000 55488000 24501000 128090000 77446000 54693000 49225000 12453000 23732000 1651200 22565000 39028000 56052000 27361000 124370000 75470000 56440000 48359000 8 8 6 8 8 8 8 8 8 8 8 5491800 9627100 114890 8069900 26376000 38563000 13915000 49300000 30026000 21370000 18303000 5114000 8977300 819660 8798600 24982000 37646000 15265000 48747000 29426000 22022000 18019000 3 3 2 3 3 3 3 3 3 3 3 7881100 15823000 116710 13263000 14752000 16925000 10587000 78788000 47420000 33324000 30922000 7338700 14755000 831530 13766000 14046000 18406000 12097000 75623000 46044000 34419000 30340000 5 5 4 5 5 5 5 5 5 5 5 12240000000 8278100000 3962200000 9900 606;695;694 9202 52829;52830;52831;52832;52833;52834 63891;63892;63893;63894;63895;63896;63897;63898;63899 63897 9 KASVVTLPVYLNFTR Unmodified 1706.9719 0.97194134 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 1 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 68.269 68.408 3 1.4474E-06 21417 20211116_3445_TMUAki_TMT10x_S_F6 109.67 97.753 12948000 23272000 126050 20405000 20370000 32703000 19860000 21060000 18859000 21223000 20142000 12056000 21704000 1148300 21203000 19517000 32295000 20141000 22005000 19275000 20721000 19391000 3 3 2 3 3 3 3 3 3 3 3 8808200 16474000 46212 13096000 14705000 28165000 14856000 16891000 14575000 16394000 14372000 8200400 15360000 709260 13824000 14097000 27510000 15053000 17727000 14833000 16032000 13871000 2 2 1 2 2 2 2 2 2 2 2 4140200 6797100 79838 7309000 5665300 4537600 5004100 4169500 4283500 4828900 5769900 3855500 6344400 439010 7378800 5420400 4785300 5088200 4277500 4442000 4689000 5520000 1 1 1 1 1 1 1 1 1 1 1 2361600000 1353500000 1008100000 9901 1695 9203 52835;52836;52837 63900;63901;63902 63902 3 KATATISAKPQITNPK Unmodified 1667.957 0.95701956 3253 Q9Y2W2 WBP11 WW domain-binding protein 11 yes yes 0 0 0 2 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 38.389 38.221 4;5 6.8222E-29 12285 20211116_3441_TMUAki_TMT10x_S_F3 189.87 173.38 7911500 12719000 71515 11581000 10934000 14040000 9290300 7353700 8473000 7809900 9921000 7366900 11864000 764900 11932000 10447000 14001000 9484200 7827800 8707000 7608700 9525600 4 4 4 4 4 4 4 4 4 4 4 6841900 10800000 48409 9696600 9667300 12950000 8001700 6095500 7128400 6648500 8393900 6370800 10073000 651930 10019000 9230500 12838000 8176500 6560000 7335100 6470500 8058100 2 2 2 2 2 2 2 2 2 2 2 1069600 1918800 23106 1884600 1266900 1089600 1288600 1258200 1344600 1161300 1527100 996100 1790300 112980 1913100 1216700 1162900 1307700 1267900 1371900 1138200 1467500 2 2 2 2 2 2 2 2 2 2 2 892300000 712260000 180040000 9902 3253 9204 52838;52839;52840 63903;63904;63905;63906 63905 4 KATGAATPK Unmodified 843.48142 0.48141661 606 P10412 HIST1H1E Histone H1.4 yes yes 0 0 0 1 By MS/MS By MS/MS 4.33 2.69 2 1 1 1 1 3 3 25.109 25.194 3 0.0011293 3991 20211116_3428_TMUAki_TMT10x_P_F1 90.913 56.835 4404900 6931900 54320 6279000 4955900 5215000 5077600 4810800 4581000 4151600 5778800 4101800 6465700 423540 6435800 4758300 5369200 5128700 4891900 4724600 4081800 5537500 4 4 4 4 4 4 4 4 4 4 4 569130 872520 8404.8 650750 580370 1007300 592560 477690 457650 452370 648810 529980 813330 55175 684860 557300 992240 596250 511650 478270 442850 619970 2 2 2 2 2 2 2 2 2 2 2 3835700 6059400 45915 5628200 4375500 4207700 4485000 4333100 4123400 3699200 5130000 3571800 5652400 368360 5750900 4201000 4377000 4532400 4380300 4246400 3639000 4917500 2 2 2 2 2 2 2 2 2 2 2 244600000 25046000 219550000 9903 606 9205 52841;52842;52843;52844;52845;52846 63907;63908;63909;63910 63907 4 KATGPPVSELITK Unmodified 1339.7711 0.77111627 693 P16401 HIST1H1B Histone H1.5 yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 48.708 48.704 3 1.7278E-11 13555 20211116_3436_TMUAki_TMT10x_P_F8 143.46 107.55 20584000 34368000 411070 35422000 36763000 43164000 25274000 101840000 44037000 38334000 41086000 19167000 32073000 2140700 36178000 34975000 44814000 26818000 98679000 43875000 40055000 39725000 7 7 3 7 7 7 7 7 7 7 7 8805800 14641000 46814 16115000 24329000 31248000 15379000 48754000 20439000 17297000 19086000 8198500 13667000 867370 16562000 23098000 31294000 16225000 47745000 20524000 18189000 18454000 3 3 1 3 3 3 3 3 3 3 3 11778000 19728000 364260 19307000 12434000 11916000 9894800 53083000 23598000 21037000 21999000 10969000 18406000 1273300 19616000 11877000 13520000 10594000 50934000 23351000 21866000 21272000 4 4 2 4 4 4 4 4 4 4 4 1636600000 889890000 746730000 9904 693 9206 52847;52848 63911;63912;63913;63914;63915;63916;63917 63912 7 KAVIFCLSADKK Unmodified 1378.7643 0.76425675 1282 P60981;P60981-2 DSTN Destrin yes no 0 0 0 2 By MS/MS By MS/MS 4 0 2 1 1 50.644 50.779 4 0.0022996 14672 20211116_3431_TMUAki_TMT10x_P_F4 75.911 61.948 10989000 17563000 96602 15683000 13837000 13408000 12165000 11751000 10112000 10025000 13188000 10231000 16381000 941650 16098000 13225000 13762000 12364000 11980000 10486000 9861700 12627000 2 2 1 2 2 2 2 2 2 2 2 4925800 8124400 96602 7985500 8104600 8747200 6463000 5706100 5003300 4701700 6326200 4587200 7580400 542940 8167700 7735700 8795800 6596300 5925000 5200900 4633300 6061700 1 1 1 1 1 1 1 1 1 1 1 6062800 9438500 0 7697400 5732100 4660900 5702500 6045000 5108700 5322900 6861900 5644200 8800600 398720 7930200 5489000 4966700 5767400 6054700 5285400 5228400 6565200 1 1 0 1 1 1 1 1 1 1 1 768670000 394010000 374660000 9905 1282 9207 52849;52850 63918;63919 63918 2 KAVLFCLSEDK Unmodified 1308.6748 0.67477304 787 P23528 CFL1 Cofilin-1 yes yes 0 0 0 1 By MS/MS By MS/MS 7 1.41 1 2 1 2 57.261 57.348 3 1.7232E-08 16512 20211116_3447_TMUAki_TMT10x_S_F8 152.31 52.27 79183000 117710000 1081800 136720000 101740000 87034000 75297000 57263000 62069000 62511000 84051000 73735000 109910000 7888900 137390000 96953000 91060000 77350000 59880000 64503000 60835000 80400000 3 3 3 3 3 3 3 3 3 3 3 43831000 62264000 406790 73215000 71329000 62834000 41559000 30557000 32894000 34672000 42327000 40814000 58140000 4398100 73763000 67670000 63926000 43444000 32821000 34178000 33693000 40539000 1 1 1 1 1 1 1 1 1 1 1 35352000 55448000 675000 63506000 30410000 24200000 33737000 26705000 29175000 27839000 41724000 32921000 51769000 3490800 63630000 29283000 27134000 33906000 27059000 30326000 27142000 39861000 2 2 2 2 2 2 2 2 2 2 2 42510000000 21240000000 21270000000 9906 787 9208 52851;52852;52853 63920;63921;63922 63922 3 KAVLFCLSEDKK Unmodified 1436.7697 0.76973606 787 P23528 CFL1 Cofilin-1 yes yes 0 0 0 2 By MS/MS By MS/MS 3.7 2.87 2 4 1 3 5 5 52.365 52.224 3;4 1.0215E-08 14881 20211116_3428_TMUAki_TMT10x_P_F1 144.27 125.67 164650000 251640000 6261500 277080000 247450000 231110000 177410000 159270000 151810000 155060000 204530000 153350000 234900000 20236000 280190000 235860000 236660000 182820000 165430000 157430000 151610000 195670000 14 14 12 14 14 14 14 14 14 14 14 83432000 121520000 1925500 135640000 153080000 151000000 85707000 75855000 75842000 77009000 100240000 77694000 113440000 9277200 137600000 145170000 151190000 90154000 80951000 78454000 75164000 95943000 7 7 5 7 7 7 7 7 7 7 7 81223000 130120000 4336000 141450000 94377000 80115000 91701000 83411000 75969000 78047000 104290000 75659000 121460000 10959000 142580000 90688000 85473000 92669000 84480000 78978000 76446000 99729000 7 7 7 7 7 7 7 7 7 7 7 18310000000 11908000000 6401800000 9907 787 9209 52854;52855;52856;52857;52858;52859;52860;52861;52862;52863 63923;63924;63925;63926;63927;63928;63929;63930;63931;63932;63933;63934;63935;63936 63923 14 KAVQGGGATPVVGAVQGPVPGMPPMTQAPR 2 Oxidation (M) 2886.4844 0.48441686 567 P09012 SNRPA U1 small nuclear ribonucleoprotein A yes yes 0 0 2 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 45.666 45.505 4 2.8736E-10 12462 20211116_3440_TMUAki_TMT10x_S_F2 88.595 85.672 3210900 5366500 22799 6310400 4560800 5562200 3445800 6476000 6886500 5318900 5170200 2989500 5011100 259110 6359700 4343400 5733100 3660100 6503600 6794400 5242400 5040600 6 6 1 6 6 6 6 6 6 6 6 1289200 2086400 22799 2442200 3001100 3783400 1918000 2517500 2567800 2124000 1992200 1200500 1948200 136520 2486400 2850700 3743100 2022200 2611700 2563400 2090600 1939600 2 2 1 2 2 2 2 2 2 2 2 1921700 3280100 0 3868100 1559700 1778800 1527900 3958600 4318700 3194900 3178000 1789000 3062900 122590 3873300 1492700 1990000 1637800 3891900 4230900 3151800 3101000 4 4 0 4 4 4 4 4 4 4 4 2059300000 1430600000 628620000 9908 567 9210 52864;52865;52866;52867 63937;63938;63939;63940;63941;63942 63940 535;536 6 KAVQGGGATPVVGAVQGPVPGMPPMTQAPR Oxidation (M) 2870.4895 0.48950223 567 P09012 SNRPA U1 small nuclear ribonucleoprotein A yes yes 0 0 1 1 By MS/MS 3 0 1 1 51.507 51.381 4 0.010204 16459 20211116_3430_TMUAki_TMT10x_P_F3 42.468 34.28 607530 1157200 31787 1080700 1153300 1565400 815290 989200 925550 952620 909480 565910 1079500 87638 1115100 1099300 1551900 848070 1033700 936190 931890 877840 1 1 1 1 1 1 1 1 1 1 1 607530 1157200 31787 1080700 1153300 1565400 815290 989200 925550 952620 909480 565910 1079500 87638 1115100 1099300 1551900 848070 1033700 936190 931890 877840 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 276400000 276400000 0 9909 567 9210 52868 63943 63943 535;536 1 KAVVVCPK Unmodified 899.52626 0.52625831 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 34.646 34.415 3 0.0038909 7792 20211116_3428_TMUAki_TMT10x_P_F1 80.438 44.043 1090900 1647600 12996 1380800 2223600 2469500 1562400 1254300 1189000 1214300 1465300 1015900 1536400 118420 1443800 2116200 2421300 1607800 1335400 1235700 1187600 1405000 1 1 1 1 1 1 1 1 1 1 1 1090900 1647600 12996 1380800 2223600 2469500 1562400 1254300 1189000 1214300 1465300 1015900 1536400 118420 1443800 2116200 2421300 1607800 1335400 1235700 1187600 1405000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 123840000 108440000 15402000 9910 1474 9211 52869;52870;52871;52872 63944;63945;63946 63944 3 KCDLISIPK Unmodified 1072.5951 0.59506616 3174 Q9ULV4;Q9ULV4-2;Q9ULV4-3 CORO1C Coronin-1C yes no 0 0 0 1 By MS/MS 8 0 1 1 49.061 48.962 3 0.040342 13206 20211116_3447_TMUAki_TMT10x_S_F8 55.401 27.658 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9911 3174 9212 52873 63947 63947 1 KCEAEEAEPPAATQPQTSETQTSHLPESER Unmodified 3337.5005 0.50045667 3160 Q9UKV3;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 34.076 33.957 4 1.4051E-46 10568 20211116_3441_TMUAki_TMT10x_S_F3 198.4 188.68 136360 121820 957.38 434230 884930 641370 221500 369800 565880 168590 366560 126970 114840 4160.1 424020 831890 634500 270030 383670 553540 172940 359780 2 2 1 2 2 2 2 2 2 2 2 92749 68165 0 257390 866120 628440 206340 258390 376820 98430 236010 86358 64312 0 254770 813890 609010 249070 276600 370890 102720 232030 1 1 0 1 1 1 1 1 1 1 1 43606 53659 957.38 176840 18804 12924 15161 111410 189060 70162 130550 40609 50530 4160.1 169250 17996 25490 20953 107070 182650 70223 127750 1 1 1 1 1 1 1 1 1 1 1 207740000 152170000 55572000 9912 3160 9213 52874;52875;52876;52877 63948;63949 63949 2 KCEPIIMTVPR Unmodified 1342.7101 0.71011269 3174 Q9ULV4;Q9ULV4-2;Q9ULV4-3;Q6QEF8;Q6QEF8-3;Q6QEF8-4;Q6QEF8-2;Q6QEF8-5 CORO1C;CORO6 Coronin-1C;Coronin-6 yes no 0 0 0 1 By MS/MS By MS/MS 3.33 3.3 2 1 1 2 45.211 45.118 3 3.9087E-06 11658 20211116_3447_TMUAki_TMT10x_S_F8 119.39 72.506 5377200 8814200 59769 11034000 9877400 8226200 6083800 6506600 6386200 5464600 7923800 5007000 8232800 552010 11057000 9378300 8514800 6378800 6671100 6538200 5379900 7596200 4 4 2 4 4 4 4 4 4 4 4 2442700 3922000 0 5039300 7355700 6117700 3865400 3271500 3140500 2711000 3765200 2274300 3663800 258800 5078100 6964400 6101900 4080900 3453100 3248800 2670800 3612800 2 2 0 2 2 2 2 2 2 2 2 2934500 4892200 59769 5994300 2521700 2108400 2218400 3235100 3245800 2753600 4158600 2732700 4569000 293210 5979200 2413900 2413000 2297900 3218000 3289400 2709200 3983300 2 2 2 2 2 2 2 2 2 2 2 413040000 214830000 198220000 9913 3174 9214 52878;52879;52880 63950;63951;63952;63953 63953 4 KCEPIVMTVPR Oxidation (M) 1344.6894 0.68937725 2632 Q9BR76 CORO1B Coronin-1B yes yes 0 0 1 1 By MS/MS 8 0 1 1 34.692 34.987 3 0.048855 8036 20211116_3436_TMUAki_TMT10x_P_F8 41.317 30.794 81150 110340 1154 124540 204410 130460 105250 45852 43664 49301 102430 75568 103020 9529.7 126140 193570 130640 110040 50993 49200 48008 96991 1 1 1 1 1 1 1 1 1 1 1 81150 110340 1154 124540 204410 130460 105250 45852 43664 49301 102430 75568 103020 9529.7 126140 193570 130640 110040 50993 49200 48008 96991 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6292800 6292800 0 9914 2632 9215 52881 63954 63954 2875 1 KCEPIVMTVPR Unmodified 1328.6945 0.69446263 2632 Q9BR76 CORO1B Coronin-1B yes yes 0 0 0 1 By MS/MS By matching 8 0 2 1 1 42.113 42.243 3 0.035387 11016 20211116_3436_TMUAki_TMT10x_P_F8 52.265 29.732 1125000 1937600 20003 1960700 2988000 2912900 1843200 1949400 1776200 1434200 1846800 1047700 1808000 138010 2012800 2837500 2887000 1927500 2015200 1812400 1422000 1779400 1 1 1 1 1 1 1 1 1 1 1 1125000 1937600 20003 1960700 2988000 2912900 1843200 1949400 1776200 1434200 1846800 1047700 1808000 138010 2012800 2837500 2887000 1927500 2015200 1812400 1422000 1779400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 138700000 98606000 40098000 9915 2632 9215 52882;52883 63955 63955 1 KCEVLCSQSNKPVTLTVEQSR Unmodified 2462.2257 0.22574255 2340 Q92544 TM9SF4 Transmembrane 9 superfamily member 4 yes yes 0 0 0 2 By MS/MS By MS/MS 8 0 2 1 1 43.16 43.253 4 2.9123E-76 10860 20211116_3447_TMUAki_TMT10x_S_F8 273.64 229.75 2902800 4611100 8884.6 5322600 4573500 3964000 2731000 2942700 2709000 2950500 3564100 2702800 4305300 272340 5359300 4339500 4099200 2865900 3043700 2787200 2881300 3411700 2 2 2 2 2 2 2 2 2 2 2 1212800 1955800 3590.2 2146000 3085400 2833600 1519200 1282800 1238400 1276100 1538700 1129200 1825700 130120 2186200 2919300 2809400 1614200 1382400 1282800 1246600 1475100 1 1 1 1 1 1 1 1 1 1 1 1690000 2655300 5294.5 3176500 1488100 1130400 1211900 1659900 1470600 1674400 2025300 1573600 2479700 142220 3173200 1420300 1289700 1251700 1661400 1504400 1634700 1936600 1 1 1 1 1 1 1 1 1 1 1 613060000 412390000 200670000 9916 2340 9216 52884;52885 63956;63957 63957 2 KCGETAFIAPQCEMIPIEWVCR Oxidation (M) 2710.2376 0.23756957 767 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 1 1 By MS/MS 7 0 1 1 69.952 70.229 4 0.00095853 24142 20211116_3446_TMUAki_TMT10x_S_F7 61.222 56.551 2141300 3556100 0 3018700 2764800 2839200 2681500 2435600 1881900 2461300 3010400 1993400 3316300 139000 3114900 2645800 2894400 2699500 2497500 1989500 2402700 2869100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2141300 3556100 0 3018700 2764800 2839200 2681500 2435600 1881900 2461300 3010400 1993400 3316300 139000 3114900 2645800 2894400 2699500 2497500 1989500 2402700 2869100 1 1 0 1 1 1 1 1 1 1 1 498480000 0 498480000 9917 767 9217 52886 63958 63958 890 1 KCPFGALSIVNLPSNLEK Unmodified 1986.0608 0.060832703 1303 P61221 ABCE1 ATP-binding cassette sub-family E member 1 yes yes 0 0 0 1 By MS/MS By MS/MS 3.8 0.4 1 4 2 3 74.494 74.427 3;4 8.1434E-12 27168 20211116_3441_TMUAki_TMT10x_S_F3 124.18 108.45 18113000 31117000 131670 28764000 21608000 24779000 23251000 16874000 15988000 16959000 22796000 16865000 29026000 1649300 29451000 20766000 25311000 23273000 17558000 16824000 16559000 21780000 6 6 4 6 6 6 6 6 6 6 6 9480800 15308000 54000 14036000 9905600 15604000 12665000 8402000 7844800 7797500 10760000 8827900 14279000 833570 14433000 9570000 15638000 12553000 8888000 8295100 7640300 10290000 3 3 2 3 3 3 3 3 3 3 3 8631800 15809000 77675 14728000 11702000 9174400 10586000 8472300 8143000 9161400 12036000 8037500 14747000 815730 15018000 11196000 9673000 10720000 8670100 8529100 8919100 11490000 3 3 2 3 3 3 3 3 3 3 3 1943600000 932130000 1011400000 9918 1303 9218 52887;52888;52889;52890;52891 63959;63960;63961;63962;63963;63964 63962 6 KCPFTGNVSIR Unmodified 1277.655 0.65504065 1348 P62280 RPS11 40S ribosomal protein S11 yes yes 0 0 0 1 By MS/MS By MS/MS 2.43 1.18 2 2 1 2 3 4 36.959 36.897 3 3.3736E-11 11164 20211116_3429_TMUAki_TMT10x_P_F2 166.7 131.93 17607000 25366000 257890 37068000 32275000 19694000 15633000 13709000 15960000 12835000 21082000 16395000 23713000 1888200 36729000 30543000 21000000 16738000 14214000 16404000 12571000 20179000 9 9 7 9 9 9 9 9 9 9 9 9149400 12819000 191660 19783000 26266000 14617000 9394300 6484800 7623200 6309500 10923000 8520500 11988000 1176900 19613000 24772000 15026000 10356000 6998500 7949900 6169500 10435000 3 3 3 3 3 3 3 3 3 3 3 8457100 12547000 66231 17285000 6009000 5077200 6238800 7224400 8336800 6525500 10160000 7874800 11726000 711270 17117000 5770400 5973600 6381200 7216000 8454100 6402000 9744200 6 6 4 6 6 6 6 6 6 6 6 1595200000 743030000 852140000 9919 1348 9219 52892;52893;52894;52895;52896;52897;52898 63965;63966;63967;63968;63969;63970;63971;63972;63973 63966 9 KCSVIRDSLYVDGDCTMDIR Oxidation (M) 2418.0978 0.097764849 920;921 P35080;P35080-2 PFN2 Profilin-2 no no 0 0 1 2 By MS/MS 6 0 1 1 45.724 45.799 4 6.6907E-07 11795 20211116_3434_TMUAki_TMT10x_P_F6 95.206 82.543 1148000 1806400 10796 1777500 2080000 3030000 1621500 2305300 2006100 1746900 1815500 1069000 1685500 118290 1834100 1983500 2993200 1680700 2363700 2017200 1729200 1757200 1 1 1 1 1 1 1 1 1 1 1 1148000 1806400 10796 1777500 2080000 3030000 1621500 2305300 2006100 1746900 1815500 1069000 1685500 118290 1834100 1983500 2993200 1680700 2363700 2017200 1729200 1757200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 204940000 204940000 0 9920 920;921 9220 52899 63974 63974 1160 1 KDCEVVMMIGLPGAGK Oxidation (M) 1719.8358 0.83578349 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 1 1 By MS/MS By MS/MS 7.33 0.471 4 2 3 3 60.006 60.446 3 1.7023E-07 19093 20211116_3435_TMUAki_TMT10x_P_F7 108.89 94.987 49712000 81741000 519280 77768000 64328000 83619000 61405000 54168000 45382000 54686000 63618000 46288000 76258000 4531300 79704000 61621000 84163000 61943000 56576000 47517000 53388000 60806000 12 12 6 12 12 12 12 12 12 12 12 30213000 47983000 353330 46855000 42823000 64073000 41759000 31775000 26473000 31813000 37620000 28132000 44769000 2862600 48137000 41046000 63486000 41940000 33937000 27996000 31069000 35945000 7 7 4 7 7 7 7 7 7 7 7 19499000 33757000 165950 30913000 21505000 19546000 19646000 22394000 18909000 22873000 25998000 18156000 31489000 1668700 31567000 20575000 20677000 20002000 22639000 19521000 22319000 24860000 5 5 2 5 5 5 5 5 5 5 5 4465200000 2395900000 2069300000 9921 1474 9221 52900;52901;52902;52903;52904;52905 63975;63976;63977;63978;63979;63980;63981;63982;63983;63984;63985;63986 63975 1990;1991 12 KDCEVVMMIGLPGAGK Unmodified 1703.8409 0.84086887 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 66.492 66.741 3 1.4105E-07 22159 20211116_3435_TMUAki_TMT10x_P_F7 114.59 96.669 51861000 79960000 547380 88339000 57564000 53691000 63149000 23682000 17427000 26211000 52228000 48291000 74642000 4739100 89010000 55359000 56160000 62348000 25669000 20965000 25495000 49305000 9 9 6 9 9 9 9 9 9 9 9 27880000 42350000 162540 46022000 33454000 38958000 37687000 14815000 11045000 15888000 27835000 25959000 39530000 2390400 46585000 32184000 39581000 37181000 16313000 12998000 15473000 26332000 5 5 2 5 5 5 5 5 5 5 5 23981000 37610000 384840 42317000 24109000 14733000 25463000 8867400 6382600 10323000 24393000 22332000 35112000 2348700 42425000 23175000 16579000 25167000 9355400 7967200 10022000 22973000 4 4 4 4 4 4 4 4 4 4 4 3425600000 1544700000 1880900000 9922 1474 9221 52906;52907;52908;52909 63987;63988;63989;63990;63991;63992;63993;63994;63995 63987 9 KDCEVVMMIGLPGAGK 2 Oxidation (M) 1735.8307 0.83069811 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 2 1 By MS/MS 7 0 1 1 52.232 52.735 3 0.00048431 16907 20211116_3446_TMUAki_TMT10x_S_F7 68.257 56.111 1866800 3636200 63918 3553400 2099600 2416600 2192500 4269900 4604500 3440900 3196800 1738600 3392700 217600 3613900 2019400 2573700 2293800 4223000 4528800 3394700 3127400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1866800 3636200 63918 3553400 2099600 2416600 2192500 4269900 4604500 3440900 3196800 1738600 3392700 217600 3613900 2019400 2573700 2293800 4223000 4528800 3394700 3127400 1 1 1 1 1 1 1 1 1 1 1 562700000 0 562700000 9923 1474 9221 52910 63996 63996 1990;1991 1 KDDEENYLDLFSHK Unmodified 1751.8002 0.80024414 1538 Q07666;Q07666-2;Q07666-3 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 4.71 1.03 1 2 2 2 4 3 59.077 59.101 4 4.5329E-19 18609 20211116_3442_TMUAki_TMT10x_S_F4 166.9 145.03 45498000 77213000 460930 81636000 64704000 83241000 54026000 52470000 56385000 56697000 59182000 42365000 72065000 4314000 82993000 61791000 84010000 55432000 55028000 57358000 55199000 57005000 9 9 7 9 9 9 9 9 9 9 9 27562000 45747000 132130 48536000 49449000 65907000 38038000 31045000 33239000 33291000 33352000 25663000 42697000 2558100 49578000 47125000 65287000 39031000 33391000 34029000 32422000 32170000 5 5 3 5 5 5 5 5 5 5 5 17936000 31466000 328800 33099000 15255000 17334000 15988000 21425000 23146000 23405000 25831000 16703000 29367000 1755900 33416000 14666000 18723000 16401000 21636000 23329000 22777000 24835000 4 4 4 4 4 4 4 4 4 4 4 10321000000 5840400000 4480200000 9924 1538 9222 52911;52912;52913;52914;52915;52916;52917 63997;63998;63999;64000;64001;64002;64003;64004;64005 64002 9 KDDEVQVVR Unmodified 1086.5669 0.56693715 1306 P61254;Q9UNX3 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 31.79 31.683 3 0.0011393 9656 20211116_3441_TMUAki_TMT10x_S_F3 90.685 56.153 1565700 2433200 6023.5 2330400 1855100 2031700 1775400 1100900 1313700 1182200 1705500 1457900 2270000 133980 2380200 1776700 2067200 1790700 1168700 1370600 1151200 1633100 2 2 1 2 2 2 2 2 2 2 2 791590 1216700 0 1199100 1201000 1306500 872820 600840 707970 618120 874310 737000 1135200 65862 1226100 1143000 1308500 897390 647020 733350 602980 838270 1 1 0 1 1 1 1 1 1 1 1 774150 1216500 6023.5 1131300 654030 725150 902580 500070 605730 564070 831190 720860 1134800 68114 1154100 633730 758730 893340 521710 637220 548270 794840 1 1 1 1 1 1 1 1 1 1 1 138850000 37353000 101490000 9925 1306 9223 52918;52919 64006;64007 64007 2 KDDYEYCMSEYLR Oxidation (M) 1786.7178 0.71783642 1205 P53611 RABGGTB Geranylgeranyl transferase type-2 subunit beta yes yes 0 0 1 1 By MS/MS 3 0 1 1 42.064 42.118 3 0.0044408 12790 20211116_3430_TMUAki_TMT10x_P_F3 61.409 50.465 517260 785640 12335 984670 1133200 1102000 626650 541940 543840 445760 630940 481720 733830 63008 992220 1074600 1102800 659560 576400 559980 439320 605940 2 2 2 2 2 2 2 2 2 2 2 517260 785640 12335 984670 1133200 1102000 626650 541940 543840 445760 630940 481720 733830 63008 992220 1074600 1102800 659560 576400 559980 439320 605940 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 49665000 49665000 0 9926 1205 9224 52920 64008;64009 64009 1614 2 KDEDLFREWLK Unmodified 1477.7565 0.75652884 344 O75531 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes yes 0 0 0 2 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 63.543 63.793 4 8.4591E-15 19506 20211116_3445_TMUAki_TMT10x_S_F6 194.24 153.51 52229000 78211000 361870 108970000 63752000 60140000 66428000 19655000 16436000 28003000 55362000 48632000 73094000 4763700 108270000 61213000 63369000 65693000 22277000 20289000 27005000 52201000 6 6 5 6 6 6 6 6 6 6 6 29999000 43355000 197860 61461000 49484000 45124000 44872000 10913000 8897800 15781000 30947000 27933000 40522000 2879300 61177000 47339000 46208000 44643000 12968000 11409000 15212000 29171000 3 3 2 3 3 3 3 3 3 3 3 22230000 34856000 164020 47512000 14268000 15016000 21556000 8742200 7538000 12222000 24415000 20700000 32572000 1884400 47090000 13874000 17160000 21050000 9309200 8880900 11793000 23030000 3 3 3 3 3 3 3 3 3 3 3 4547300000 2687900000 1859300000 9927 344 9225 52921;52922;52923;52924;52925 64010;64011;64012;64013;64014;64015 64013 6 KDEELDPMDPSSYSDAPR Unmodified 2050.879 0.87896475 291 O60828;O60828-5;O60828-2;O60828-4 PQBP1 Polyglutamine-binding protein 1 yes no 0 0 0 1 By MS/MS 3 0 1 1 51.804 51.678 3 0.00012001 16725 20211116_3430_TMUAki_TMT10x_P_F3 70.986 61.406 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9928 291 9226 52926 64016 64016 1 KDEELDPMDPSSYSDAPR Oxidation (M) 2066.8739 0.87387937 291 O60828;O60828-5;O60828-2;O60828-4 PQBP1 Polyglutamine-binding protein 1 yes no 0 0 1 1 By MS/MS 2.5 0.5 1 1 2 41.553 41.61 3 9.6139E-07 10760 20211116_3440_TMUAki_TMT10x_S_F2 100.02 93.755 716680 1280700 10849 1887900 450980 479380 376900 1705400 2268300 1184200 1543200 667380 1197300 65808 1862000 431210 602790 444730 1656500 2199100 1178000 1511100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 716680 1280700 10849 1887900 450980 479380 376900 1705400 2268300 1184200 1543200 667380 1197300 65808 1862000 431210 602790 444730 1656500 2199100 1178000 1511100 2 2 2 2 2 2 2 2 2 2 2 50996000 0 50996000 9929 291 9226 52927;52928 64017;64018;64019 64017 226 3 KDEKTDTLEDLFPTTK Unmodified 1879.9415 0.94148865 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 2 By MS/MS By MS/MS 6.17 1.34 2 2 2 4 2 6 6 59.059 59.313 3;4 2.9159E-10 19030 20211116_3435_TMUAki_TMT10x_P_F7 124.92 110.31 205150000 367530000 2156300 359030000 374360000 489080000 285650000 384020000 361220000 349370000 331040000 191030000 342910000 21243000 368810000 356840000 487860000 296730000 394710000 363100000 342640000 320280000 21 21 17 21 21 21 21 21 21 21 21 139120000 245510000 1603400 233140000 303460000 421190000 235550000 257610000 241950000 235900000 217400000 129550000 229040000 15282000 241530000 289350000 413810000 242680000 269520000 244990000 231280000 210480000 14 14 12 14 14 14 14 14 14 14 14 66032000 122020000 552890 125880000 70900000 67886000 50103000 126420000 119270000 113470000 113640000 61485000 113870000 5961500 127280000 67487000 74051000 54050000 125190000 118110000 111350000 109800000 7 7 5 7 7 7 7 7 7 7 7 20579000000 11955000000 8624900000 9930 648 9227 52929;52930;52931;52932;52933;52934;52935;52936;52937;52938;52939;52940 64020;64021;64022;64023;64024;64025;64026;64027;64028;64029;64030;64031;64032;64033;64034;64035;64036;64037;64038;64039;64040 64029 21 KDENSINGTPDITVEIR Unmodified 1899.9538 0.95378467 933 P35573;P35573-2;P35573-3 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes no 0 0 0 1 By MS/MS 4 0 1 1 49.116 49.271 3 5.3754E-05 14497 20211116_3442_TMUAki_TMT10x_S_F4 82.609 59.807 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9931 933 9228 52941 64041 64041 1 KDETNVK Unmodified 832.42905 0.42904669 545 P07910-2;P07910-4;P07910;P07910-3 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 29.212 29.199 3 0.018079 6386 20211116_3433_TMUAki_TMT10x_P_F5 78.934 38.503 843830 1139600 3470.2 886330 807600 1169700 589850 613410 683510 561720 866060 785710 1062400 72686 926320 769100 1161600 612600 650200 697730 550730 829810 2 2 2 2 2 2 2 2 2 2 2 843830 1139600 3470.2 886330 807600 1169700 589850 613410 683510 561720 866060 785710 1062400 72686 926320 769100 1161600 612600 650200 697730 550730 829810 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17147000 17147000 0 9932 545 9229 52942;52943 64042;64043 64043 2 KDGNASGTTLLEALDCILPPTRPTDK Unmodified 2782.4171 0.41710838 1416 P68104;Q5VTE0 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 0 0 0 2 By MS/MS By MS/MS 7.29 0.7 1 3 3 3 4 77.005 77.019 4;5 9.9822E-39 24583 20211116_3447_TMUAki_TMT10x_S_F8 184.29 170.27 115380000 169010000 500600 228600000 91226000 103330000 110130000 57275000 51564000 63694000 107790000 107430000 157930000 7987800 227130000 87940000 111960000 108910000 60750000 57016000 61943000 102240000 9 9 3 9 9 9 9 9 9 9 9 52050000 76532000 426780 101540000 36314000 58457000 39401000 23883000 22658000 26007000 46386000 48464000 71506000 4151500 101180000 34901000 61433000 39287000 26091000 24625000 25312000 44012000 3 3 1 3 3 3 3 3 3 3 3 63329000 92483000 73819 127060000 54912000 44872000 70733000 33392000 28907000 37687000 61403000 58964000 86425000 3836300 125950000 53039000 50524000 69626000 34658000 32391000 36630000 58227000 6 6 2 6 6 6 6 6 6 6 6 35315000000 19467000000 15847000000 9933 1416 9230 52944;52945;52946;52947;52948;52949;52950 64044;64045;64046;64047;64048;64049;64050;64051;64052 64050 9 KDGSCGVAYVVQEPGDYEVSVK Unmodified 2385.1158 0.11584098 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 1 By MS/MS 5 0 1 1 56.919 57.113 3 0.0026517 17530 20211116_3433_TMUAki_TMT10x_P_F5 58.627 49.463 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9934 755 9231 52951 64053 64053 1 KDHPFGFVAVPTK Unmodified 1441.7718 0.77178497 1408 P63279 UBE2I SUMO-conjugating enzyme UBC9 yes yes 0 0 0 1 By MS/MS By MS/MS 4.2 3.12 1 2 2 3 2 49.497 49.416 4 3.9914E-06 13787 20211116_3428_TMUAki_TMT10x_P_F1 104.17 90.505 9191300 15512000 191100 15826000 19933000 21228000 12300000 19249000 18380000 17172000 16635000 8559000 14475000 1045900 16203000 18930000 21248000 13064000 19609000 18370000 16857000 16101000 5 5 4 5 5 5 5 5 5 5 5 4584800 7400600 142390 8056000 15653000 16485000 8384800 9529300 9823900 8775100 8535700 4269600 6908000 623120 8298200 14832000 16118000 8929600 10017000 9885400 8601300 8274000 3 3 2 3 3 3 3 3 3 3 3 4606500 8111200 48708 7769500 4280000 4743200 3915700 9720000 8555800 8397300 8099100 4289500 7567400 422730 7905100 4097700 5130500 4134500 9591900 8484800 8255700 7827000 2 2 2 2 2 2 2 2 2 2 2 2115000000 1564700000 550260000 9935 1408 9232 52952;52953;52954;52955;52956 64054;64055;64056;64057;64058 64054 5 KDHRDNLEFFLAGIGR Unmodified 1886.9751 0.97512924 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 2 By MS/MS 4.5 3.5 1 1 2 56.317 56.383 4 6.9057E-21 16685 20211116_3428_TMUAki_TMT10x_P_F1 163.44 148.57 4780900 7508700 0 6799700 5928400 9916000 5573100 5989100 5805700 5667500 5711800 4450800 7003800 326660 7033500 5669900 9821300 5678800 6277800 5892800 5548400 5512900 2 2 0 2 2 2 2 2 2 2 2 4780900 7508700 0 6799700 5928400 9916000 5573100 5989100 5805700 5667500 5711800 4450800 7003800 326660 7033500 5669900 9821300 5678800 6277800 5892800 5548400 5512900 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1511300000 1511300000 0 9936 1092 9233 52957;52958 64059;64060 64059 2 KDIHFMPCSGLTGANLK Unmodified 1887.9335 0.9335237 681 P15170-3;P15170-2;P15170 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 0 0 0 1 By MS/MS 2 0 1 1 53.265 53.083 4 0.00226 15573 20211116_3440_TMUAki_TMT10x_S_F2 60.949 0 5885200 9959200 7857.3 10171000 5147600 4284800 4370800 5328900 4973200 4796700 6889500 5479300 9293800 426760 10273000 4912900 4751600 4492700 5349400 5101000 4706600 6586700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5885200 9959200 7857.3 10171000 5147600 4284800 4370800 5328900 4973200 4796700 6889500 5479300 9293800 426760 10273000 4912900 4751600 4492700 5349400 5101000 4706600 6586700 2 2 1 2 2 2 2 2 2 2 2 297800000 0 297800000 9937 681 9234 52959 64061;64062 64062 2 KDILLVNDHLLNFVR Unmodified 1808.0309 0.030853203 2945 Q9NTI5;Q9NTI5-2;Q9NTI5-3 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 0 0 0 1 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 69.593 69.255 4 3.0474E-24 25058 20211116_3441_TMUAki_TMT10x_S_F3 192.96 173.39 3244800 6050700 46332 5139500 3683300 4727200 3874100 4427700 3950100 4145100 4264700 3021500 5642500 318340 5301300 3539300 4834500 3922100 4508400 4026400 4060000 4104300 3 3 3 3 3 3 3 3 3 3 3 788600 1555900 21470 1305200 1089700 2009600 1105400 1174400 1038300 1079400 1106200 734420 1450900 89607 1359800 1046600 1985000 1118400 1233300 1061600 1058100 1065000 1 1 1 1 1 1 1 1 1 1 1 2456200 4494800 24862 3834200 2593600 2717600 2768700 3253300 2911900 3065700 3158600 2287100 4191600 228730 3941500 2492700 2849500 2803700 3275100 2964800 3001900 3039300 2 2 2 2 2 2 2 2 2 2 2 1714500000 1325600000 388900000 9938 2945 9235 52960;52961;52962 64063;64064;64065 64064 3 KDLYANTVLSGGTTMYPGIADR Oxidation (M) 2358.1526 0.15256084 1276;1406 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 1 1 By MS/MS By MS/MS 5.33 3.09 4 4 4 6 6 59.04 59.227 3;4 2.2769E-14 17756 20211116_3428_TMUAki_TMT10x_P_F1 132.26 123.1 33367000 63933000 38826 44587000 45904000 122260000 51072000 155050000 112000000 107470000 76502000 31066000 59584000 2454300 48014000 44127000 120490000 53420000 154570000 110020000 106930000 74898000 14 14 3 14 14 14 14 14 14 14 14 18666000 35789000 9788.2 24530000 27065000 88675000 34679000 92141000 66139000 63913000 43477000 17379000 33353000 1316100 26779000 26134000 86457000 35752000 92663000 65104000 63584000 42642000 7 7 1 7 7 7 7 7 7 7 7 14701000 28144000 29038 20057000 18839000 33581000 16393000 62909000 45865000 43562000 33025000 13687000 26231000 1138200 21235000 17993000 34035000 17668000 61903000 44915000 43342000 32256000 7 7 2 7 7 7 7 7 7 7 7 40572000000 22628000000 17944000000 9939 1276;1406 9236 52963;52964;52965;52966;52967;52968;52969;52970;52971;52972;52973;52974 64066;64067;64068;64069;64070;64071;64072;64073;64074;64075;64076;64077;64078;64079 64067 1720 14 KDLYANTVLSGGTTMYPGIADR Unmodified 2342.1576 0.15764621 1276;1406 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 0 1 By MS/MS By MS/MS 3.8 3.43 3 2 2 3 64.392 64.321 3;4 1.0692E-19 21890 20211116_3439_TMUAki_TMT10x_S_F1 152.96 144.65 30251000 52211000 306000 35567000 34227000 62009000 41012000 37153000 25303000 38639000 40505000 28166000 48656000 2572600 37855000 32990000 60981000 40759000 39073000 26968000 37676000 38604000 9 9 5 9 9 9 9 9 9 9 9 15900000 26548000 176170 16800000 16828000 40268000 23928000 20503000 13459000 21834000 20268000 14804000 24736000 1254800 18178000 16309000 39130000 23575000 21883000 14392000 21269000 19341000 4 4 2 4 4 4 4 4 4 4 4 14350000 25663000 129830 18767000 17399000 21742000 17085000 16650000 11844000 16805000 20238000 13362000 23920000 1317800 19677000 16681000 21851000 17184000 17190000 12576000 16406000 19263000 5 5 3 5 5 5 5 5 5 5 5 8029900000 3040700000 4989200000 9940 1276;1406 9236 52975;52976;52977;52978;52979 64080;64081;64082;64083;64084;64085;64086;64087;64088 64086 9 KDPATQQAFVFGQNLR Unmodified 1818.9377 0.9376811 2821 Q9H6Z4;Q9H6Z4-2;Q9H6Z4-3 RANBP3 Ran-binding protein 3 yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 53.423 53.243 3 4.3611E-21 15634 20211116_3440_TMUAki_TMT10x_S_F2 165.09 141.41 9316600 14678000 126740 18653000 10696000 11851000 8468400 8559500 9927100 9082000 11325000 8675100 13711000 836240 18647000 10203000 12418000 8751500 8884500 10085000 8848500 10882000 5 5 3 5 5 5 5 5 5 5 5 4286400 6677400 20367 7985800 6573600 8106200 4656700 3617800 4362800 4183200 4949800 3990800 6235600 355640 8056300 6252800 8149800 4814600 3921800 4472100 4062200 4756700 2 2 1 2 2 2 2 2 2 2 2 5030200 8001000 106370 10667000 4122600 3744300 3811700 4941700 5564200 4898900 6375700 4684200 7475700 480610 10590000 3950100 4268400 3936900 4962700 5612800 4786200 6125300 3 3 2 3 3 3 3 3 3 3 3 870770000 505380000 365390000 9941 2821 9237 52980;52981;52982;52983 64089;64090;64091;64092;64093 64093 5 KDPDINMHPFFFALGK Unmodified 1875.9342 0.93417563 267 O60427;O60427-2 FADS1 Fatty acid desaturase 1 yes no 0 0 0 1 By MS/MS 2 0 1 1 70.973 70.702 4 0.00060834 24032 20211116_3429_TMUAki_TMT10x_P_F2 66.965 42.924 8490000 13717000 60567 15232000 10100000 11233000 9840000 3636900 3183500 4139400 8237400 7905500 12805000 782880 15372000 9681800 11519000 9788700 4096200 3709200 4022000 7789800 1 1 1 1 1 1 1 1 1 1 1 8490000 13717000 60567 15232000 10100000 11233000 9840000 3636900 3183500 4139400 8237400 7905500 12805000 782880 15372000 9681800 11519000 9788700 4096200 3709200 4022000 7789800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 515220000 515220000 0 9942 267 9238 52984 64094 64094 1 KDPELWGSVLLESNPYR Unmodified 2002.016 0.015991 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 73.695 73.632 3 9.0612E-11 23758 20211116_3436_TMUAki_TMT10x_P_F8 126.4 114.2 34482000 52818000 317210 56487000 41742000 42988000 40681000 25072000 24596000 27185000 38864000 32108000 49298000 3136900 57165000 40009000 44223000 40822000 26459000 26233000 26463000 37049000 4 4 2 4 4 4 4 4 4 4 4 16239000 24630000 41562 27026000 19410000 28025000 21073000 12620000 11946000 13071000 18478000 15121000 22991000 1405200 27417000 18654000 28142000 21005000 13623000 12784000 12748000 17623000 2 2 1 2 2 2 2 2 2 2 2 18243000 28188000 275650 29461000 22332000 14963000 19608000 12451000 12651000 14114000 20386000 16987000 26307000 1731700 29748000 21355000 16081000 19816000 12836000 13449000 13716000 19426000 2 2 1 2 2 2 2 2 2 2 2 2094800000 1163500000 931300000 9943 1471 9239 52985;52986 64095;64096;64097;64098 64095 4 KDPSAFFSFPVTDFIAPGYSMIIK Oxidation (M) 2693.3451 0.34511263 2894 Q9NPI1;Q9NPI1-2 BRD7 Bromodomain-containing protein 7 yes no 0 0 1 1 By MS/MS 4 0 1 1 80.441 80.426 4 0.0026075 27271 20211116_3442_TMUAki_TMT10x_S_F4 55.881 41.421 1278400 2196800 0 1816000 1584400 1599600 1624400 1071700 949080 1134100 1454300 1190100 2048500 81685 1876300 1518300 1631100 1624700 1118100 1013000 1105100 1387200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1278400 2196800 0 1816000 1584400 1599600 1624400 1071700 949080 1134100 1454300 1190100 2048500 81685 1876300 1518300 1631100 1624700 1118100 1013000 1105100 1387200 1 1 0 1 1 1 1 1 1 1 1 241970000 0 241970000 9944 2894 9240 52987 64099 64099 3010 1 KDSEDMGVVVSLGTGNR Oxidation (M) 1778.8469 0.84687676 1242 P55265;P55265-5;P55265-4;P55265-3;P55265-2 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 1 1 By MS/MS 4 0 1 1 39.933 40.13 3 8.2722E-06 10836 20211116_3442_TMUAki_TMT10x_S_F4 95.205 74.742 869750 1385000 12860 1493500 813200 825000 867660 1018800 920330 965030 1165000 809910 1292700 83301 1505900 781880 886050 878890 1024400 942650 944710 1116300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 869750 1385000 12860 1493500 813200 825000 867660 1018800 920330 965030 1165000 809910 1292700 83301 1505900 781880 886050 878890 1024400 942650 944710 1116300 2 2 2 2 2 2 2 2 2 2 2 69100000 0 69100000 9945 1242 9241 52988 64100;64101 64101 1687 2 KDSETGENIR Unmodified 1147.5469 0.54692999 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 1 By MS/MS 3 0 1 1 27.845 27.561 3 0.00069462 8109 20211116_3441_TMUAki_TMT10x_S_F3 92.925 63.755 193060 328910 2163.7 228720 225170 290650 268400 198000 195250 177110 258110 179780 306530 18472 241330 217120 290190 267720 205360 204060 173840 247050 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 193060 328910 2163.7 228720 225170 290650 268400 198000 195250 177110 258110 179780 306530 18472 241330 217120 290190 267720 205360 204060 173840 247050 1 1 1 1 1 1 1 1 1 1 1 12195000 0 12195000 9946 972 9242 52989 64102 64102 1 KDYNEAYNYYTK Unmodified 1570.694 0.69398816 2590 Q99615 DNAJC7 DnaJ homolog subfamily C member 7 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 44.458 44.972 3 0.00014989 13779 20211116_3446_TMUAki_TMT10x_S_F7 93.478 72.828 2541000 4252500 20615 6006900 12146000 9222300 4663800 5874900 7925300 3759900 5636400 2366000 3974600 345730 6052200 11458000 9121500 5222900 6078800 7838700 3759200 5508100 3 3 2 3 3 3 3 3 3 3 3 1983500 3307200 12621 4623400 11704000 8811100 4228900 4487000 6282700 3025100 4328700 1846800 3090900 293680 4686200 11034000 8620700 4744000 4736500 6232300 3014700 4236200 2 2 1 2 2 2 2 2 2 2 2 557550 945290 7995 1383600 442060 411140 434900 1388000 1642600 734760 1307700 519190 883700 52058 1366000 424180 500780 478900 1342300 1606400 744510 1271800 1 1 1 1 1 1 1 1 1 1 1 266480000 193120000 73356000 9947 2590 9243 52990;52991 64103;64104;64105 64105 3 KEAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK Unmodified 3438.6218 0.62177455 1889 Q3ZCM7 TUBB8 Tubulin beta-8 chain yes yes 0 0 0 1 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 68.976 68.898 4;5 6.3557E-16 21836 20211116_3436_TMUAki_TMT10x_P_F8 113.7 0 17520000 33368000 17769 18406000 25998000 33111000 26353000 13805000 7968300 17610000 21669000 16310000 31080000 1185600 20054000 24912000 32390000 26143000 15124000 9397000 17042000 20479000 3 3 1 3 3 3 3 3 3 3 3 9701500 16180000 0 7979500 10169000 19759000 12287000 6236800 3185500 9095200 10812000 9031200 15067000 577220 8895800 9788800 19099000 12070000 7109200 3909500 8765100 10194000 1 1 0 1 1 1 1 1 1 1 1 7818300 17188000 17769 10426000 15828000 13352000 14066000 7568000 4782800 8515200 10857000 7278400 16013000 608400 11158000 15123000 13291000 14073000 8014800 5487500 8277300 10285000 2 2 1 2 2 2 2 2 2 2 2 6112200000 2712700000 3399400000 9948 1889 9244 52992;52993;52994 64106;64107;64108 64106 3 KEAESSPFVER Unmodified 1277.6252 0.62518031 672 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 1 By MS/MS By MS/MS 4.25 0.829 1 1 2 2 2 33.787 33.697 3 1.2282E-05 7884 20211116_3431_TMUAki_TMT10x_P_F4 109.95 91.282 1548300 2506500 6023.9 2422300 3692600 2961200 1975600 1744500 1946100 1502800 2277500 1441700 2338500 164010 2485100 3497900 2956100 2092800 1827900 1992900 1477600 2186700 2 2 2 2 2 2 2 2 2 2 2 1223800 1973400 1976.7 1894700 3331900 2638200 1593800 1348100 1496200 1170000 1767800 1139500 1841100 132830 1949600 3151200 2612800 1704500 1430400 1536000 1150000 1696900 1 1 1 1 1 1 1 1 1 1 1 324540 533020 4047.2 527570 360690 323010 381760 396400 449920 332790 509700 302210 497340 31185 535540 346620 343330 388240 397420 456850 327640 489840 1 1 1 1 1 1 1 1 1 1 1 121120000 105720000 15392000 9949 672 9245 52995;52996;52997;52998 64109;64110;64111 64109 3 KECENCDCLQGFQLTHSLGGGTGSGMGTLLISK Oxidation (M) 3570.6211 0.62112263 1640 Q13509;Q13509-2 TUBB3 Tubulin beta-3 chain yes no 0 0 1 1 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 61.696 62.037 4 2.1644E-11 19079 20211116_3436_TMUAki_TMT10x_P_F8 99.7 72.48 5947100 11675000 0 8018400 8438900 15161000 8178100 13255000 11580000 13391000 10373000 5537300 10880000 131530 8545200 8084900 14962000 8414400 13577000 11589000 13073000 10043000 2 2 0 2 2 2 2 2 2 2 2 1621400 3016400 0 1851800 1624000 5540100 2470900 3961200 3370100 3859000 2685300 1509700 2810300 131530 2026600 1578300 5380900 2489900 4104100 3364800 3773100 2611600 1 1 0 1 1 1 1 1 1 1 1 4325700 8658100 0 6166600 6814900 9621100 5707200 9294100 8210400 9531900 7687300 4027600 8069600 0 6518600 6506600 9580900 5924500 9473200 8224600 9299500 7431800 1 1 0 1 1 1 1 1 1 1 1 4789300000 1352000000 3437300000 9950 1640 9246 52999;53000 64112;64113 64112 2202 2 KECENCDCLQGFQLTHSLGGGTGSGMGTLLISK Unmodified 3554.6262 0.626208 1640 Q13509;Q13509-2 TUBB3 Tubulin beta-3 chain yes no 0 0 0 1 By MS/MS By matching 8 0 2 1 1 68.294 68.28 4 1.2627E-06 21571 20211116_3436_TMUAki_TMT10x_P_F8 70.073 60.852 3268100 6066300 0 3244600 3413100 7588500 5205300 1592200 1259100 2480100 3606100 3042700 5649900 248180 3574300 3316100 7327900 5064000 1948000 1536900 2385600 3406000 1 1 0 1 1 1 1 1 1 1 1 3268100 6066300 0 3244600 3413100 7588500 5205300 1592200 1259100 2480100 3606100 3042700 5649900 248180 3574300 3316100 7327900 5064000 1948000 1536900 2385600 3406000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2566600000 1221800000 1344800000 9951 1640 9246 53001;53002 64114 64114 1 KEDGTFYEFGEDIPEAPER Unmodified 2227.991 0.99095804 244 O43776 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 60.563 60.252 3 2.0477E-17 19780 20211116_3429_TMUAki_TMT10x_P_F2 144.27 138.82 9410400 16017000 76816 15803000 11030000 16336000 12212000 11717000 11539000 12174000 13119000 8762400 14945000 853990 16144000 10609000 16506000 12304000 12159000 11824000 11871000 12606000 4 4 3 4 4 4 4 4 4 4 4 5500200 9106600 61642 8950500 6866900 12302000 7703600 6432300 6504800 7015600 7663300 5121700 8496800 532590 9192100 6609100 12193000 7733200 6853600 6711000 6827800 7356600 2 2 2 2 2 2 2 2 2 2 2 3910200 6910800 15174 6852100 4163500 4034800 4508300 5284300 5034000 5158100 5455500 3640700 6448300 321390 6952300 4000400 4312300 4571200 5305900 5113200 5042900 5249700 2 2 1 2 2 2 2 2 2 2 2 2154400000 782040000 1372400000 9952 244 9247 53003;53004;53005;53006 64115;64116;64117;64118;64119 64116 5 KEDINLSVR Unmodified 1072.5877 0.58767259 1821 Q15645;Q15645-2 TRIP13 Pachytene checkpoint protein 2 homolog yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 37.628 37.684 3 0.00035684 8521 20211116_3444_TMUAki_TMT10x_S_F5 116.55 89.873 4392100 6783700 956.04 7333200 7029300 8037000 5359700 4613000 4726600 4407300 5790800 4089500 6331900 400690 7452800 6698000 8067200 5504300 4856800 4874000 4312900 5553200 3 3 1 3 3 3 3 3 3 3 3 3483000 5331000 956.04 5763700 6144700 7204300 4443100 3581700 3760400 3549100 4608500 3243000 4976000 326080 5870900 5849100 7169000 4574700 3823500 3885500 3467600 4419400 2 2 1 2 2 2 2 2 2 2 2 909110 1452700 0 1569500 884580 832660 916550 1031200 966170 858180 1182300 846470 1355900 74611 1581900 848960 898170 929560 1033300 988410 845270 1133800 1 1 0 1 1 1 1 1 1 1 1 351110000 265870000 85246000 9953 1821 9248 53007;53008;53009 64120;64121;64122 64122 3 KEDLISAFGTDDQTEICK Unmodified 2068.9623 0.96230045 3267 Q9Y3A5 SBDS Ribosome maturation protein SBDS yes yes 0 0 0 1 By MS/MS 5 1 1 1 2 63.341 63.32 3;4 3.6996E-12 19321 20211116_3445_TMUAki_TMT10x_S_F6 130.56 116.39 2196500 4075400 65992 3836400 2662700 2523800 2335400 3191100 2821600 2745600 3208700 2045600 3801900 250130 3911100 2548900 2667000 2401100 3197500 2863000 2699900 3083300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2196500 4075400 65992 3836400 2662700 2523800 2335400 3191100 2821600 2745600 3208700 2045600 3801900 250130 3911100 2548900 2667000 2401100 3197500 2863000 2699900 3083300 1 1 1 1 1 1 1 1 1 1 1 86818000 0 86818000 9954 3267 9249 53010;53011 64123;64124 64124 2 KEDLYLKPIQR Unmodified 1401.798 0.79799972 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 2 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 42.789 42.963 4 5.3027E-08 10762 20211116_3447_TMUAki_TMT10x_S_F8 142.83 114.63 17232000 26069000 179580 35643000 39831000 29066000 19948000 18347000 20669000 15897000 25326000 16046000 24361000 1906800 35587000 37703000 29775000 21296000 19122000 21161000 15627000 24287000 8 8 5 8 8 8 8 8 8 8 8 9879800 14616000 151000 20215000 34430000 23658000 13536000 10809000 11743000 9044500 14508000 9200200 13659000 1303700 20279000 32497000 23600000 14767000 11585000 12123000 8906000 13910000 4 4 4 4 4 4 4 4 4 4 4 7352500 11453000 28586 15428000 5401300 5408300 6411700 7538200 8925700 6852400 10819000 6846100 10702000 603150 15309000 5205800 6175500 6528700 7536300 9037500 6720600 10378000 4 4 1 4 4 4 4 4 4 4 4 1689000000 1305200000 383800000 9955 653 9250 53012;53013;53014;53015;53016;53017 64125;64126;64127;64128;64129;64130;64131;64132 64132 8 KEDMTYAVR Unmodified 1111.5332 0.53319418 1543 Q07955;Q07955-3;Q07955-2 SRSF1 Serine/arginine-rich splicing factor 1 yes no 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 34.395 34.347 3 1.1994E-05 7039 20211116_3444_TMUAki_TMT10x_S_F5 116.55 55.385 960760 1438600 0 1437400 2025600 1628400 1166700 744280 674180 694090 1226800 894530 1342400 89690 1469300 1920400 1627300 1213100 799850 727020 679960 1166300 1 1 0 1 1 1 1 1 1 1 1 960760 1438600 0 1437400 2025600 1628400 1166700 744280 674180 694090 1226800 894530 1342400 89690 1469300 1920400 1627300 1213100 799850 727020 679960 1166300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 53430000 53430000 0 9956 1543 9251 53018;53019 64133;64134 64134 2 KEECPAVR Unmodified 987.48076 0.48076468 533 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 1 By matching By MS/MS 2.5 0.5 1 1 1 1 27.296 27.036 3 0.016541 7985 20211116_3441_TMUAki_TMT10x_S_F3 63.216 29.666 104510 163400 0 142380 80705 98600 124060 69988 74876 68358 115920 97310 152390 7972.9 146090 78451 102500 122050 72554 79783 66829 110550 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 104510 163400 0 142380 80705 98600 124060 69988 74876 68358 115920 97310 152390 7972.9 146090 78451 102500 122050 72554 79783 66829 110550 1 1 0 1 1 1 1 1 1 1 1 4958500 1024900 3933600 9957 533 9252 53020;53021 64135 64135 1 KEEELQAALAR Unmodified 1256.6725 0.67246486 934;2078 P35579;Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-5;Q7Z406-4 MYH9;MYH14 Myosin-9;Myosin-14 no no 0 0 0 1 By MS/MS 4 0 1 1 42.623 42.839 3 0.00028234 11887 20211116_3442_TMUAki_TMT10x_S_F4 89.44 65.835 1110000 1859100 9748.8 2088900 1022100 1100600 1213400 1444000 1658700 1292600 1762400 1033600 1735600 99882 2100000 985460 1189900 1234600 1446300 1671600 1268600 1696900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1110000 1859100 9748.8 2088900 1022100 1100600 1213400 1444000 1658700 1292600 1762400 1033600 1735600 99882 2100000 985460 1189900 1234600 1446300 1671600 1268600 1696900 1 1 1 1 1 1 1 1 1 1 1 54266000 0 54266000 9958 934;2078 9253 53022 64136 64136 1 KEEELQGALAR Unmodified 1242.6568 0.65681479 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 1 By MS/MS By MS/MS 4 0.816 1 1 1 1 2 37.623 37.602 3 1.3489E-05 9445 20211116_3431_TMUAki_TMT10x_P_F4 108.59 84.303 2909900 4703300 17898 5355100 5908200 4676300 3556400 3459700 3910200 3076700 4408400 2709400 4391100 288340 5406900 5606200 4778400 3741300 3567500 3980100 3020700 4237200 3 3 2 3 3 3 3 3 3 3 3 1607700 2495000 0 2808300 4823600 3536400 2360200 1851100 2170200 1641600 2415000 1496900 2329300 166750 2853700 4562400 3519900 2517000 1960800 2224800 1611900 2322100 1 1 0 1 1 1 1 1 1 1 1 1302100 2208300 17898 2546800 1084600 1139900 1196200 1608600 1740000 1435100 1993400 1212600 2061800 121590 2553200 1043800 1258600 1224400 1606700 1755300 1408800 1915100 2 2 2 2 2 2 2 2 2 2 2 134960000 81497000 53463000 9959 935 9254 53023;53024;53025 64137;64138;64139 64137 3 KEEENASVIDSAELQAYPALVVEK Unmodified 2631.3279 0.32794224 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.957 1 2 2 1 2 4 70.653 70.415 4 1.668E-22 23874 20211116_3429_TMUAki_TMT10x_P_F2 149.18 134.05 23613000 40984000 289000 38083000 27151000 38730000 30065000 29212000 27660000 30627000 31721000 21988000 38232000 1755700 39066000 26120000 39202000 30269000 30223000 28388000 29854000 30475000 10 10 6 10 10 10 10 10 10 10 10 12330000 20487000 337.07 19541000 13737000 24721000 15174000 14761000 13782000 15171000 15674000 11479000 19113000 521400 20079000 13202000 24641000 15273000 15523000 14148000 14800000 15062000 5 5 1 5 5 5 5 5 5 5 5 11283000 20498000 288660 18542000 13415000 14010000 14891000 14450000 13878000 15457000 16047000 10508000 19119000 1234300 18986000 12917000 14562000 14996000 14700000 14240000 15054000 15413000 5 5 5 5 5 5 5 5 5 5 5 6288300000 3112600000 3175700000 9960 1433 9255 53026;53027;53028;53029;53030;53031 64140;64141;64142;64143;64144;64145;64146;64147;64148;64149 64140 10 KEELIGIAYNR Unmodified 1304.7089 0.70885036 2406 Q96AC1;Q96AC1-2;Q96AC1-3 FERMT2 Fermitin family homolog 2 yes no 0 0 0 1 By MS/MS By matching 7.5 0.5 1 1 1 1 49.142 49.404 3 0.022208 15104 20211116_3435_TMUAki_TMT10x_P_F7 57.106 30.664 4207000 6073700 22969 6519800 7355200 9442500 4925100 5046300 4456500 4728100 4987300 3917300 5669000 414290 6663500 6992800 9340300 5108300 5343100 4573100 4630800 4794700 1 1 1 1 1 1 1 1 1 1 1 4207000 6073700 22969 6519800 7355200 9442500 4925100 5046300 4456500 4728100 4987300 3917300 5669000 414290 6663500 6992800 9340300 5108300 5343100 4573100 4630800 4794700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 247610000 218680000 28930000 9961 2406 9256 53032;53033 64150 64150 1 KEELNAISGPNEFAEFYNR Unmodified 2227.0546 0.054561351 1572 Q12874 SF3A3 Splicing factor 3A subunit 3 yes yes 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 64.47 64.516 3 0.0047532 19813 20211116_3445_TMUAki_TMT10x_S_F6 57.142 41.02 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9962 1572 9257 53034;53035 64151;64152 64152 2 KEELTLEGIR Unmodified 1186.6558 0.65575216 1277 P60842;P60842-2 EIF4A1 Eukaryotic initiation factor 4A-I yes no 0 0 0 1 By MS/MS By MS/MS 5 1.07 1 1 2 3 5 2 45.066 45.182 3 3.4179E-09 11500 20211116_3434_TMUAki_TMT10x_P_F6 139.76 97.55 27270000 36332000 64963 44011000 57879000 45388000 29084000 28760000 25864000 25024000 37218000 25387000 33931000 2173700 44377000 54739000 45780000 30907000 29969000 26856000 24593000 35551000 6 6 2 6 6 6 6 6 6 6 6 23218000 30045000 0 36262000 55091000 42057000 25041000 24422000 21491000 21009000 31501000 21614000 28059000 1794900 36641000 52031000 42091000 26862000 25619000 22374000 20659000 30078000 4 4 0 4 4 4 4 4 4 4 4 4051400 6287100 64963 7749100 2787300 3331500 4042800 4337600 4372800 4015200 5716200 3772700 5872000 378730 7736000 2708100 3689000 4045400 4349700 4481800 3934800 5472600 2 2 2 2 2 2 2 2 2 2 2 2576900000 1930300000 646670000 9963 1277 9258 53036;53037;53038;53039;53040;53041;53042 64153;64154;64155;64156;64157;64158;64159;64160 64157 8 KEENLADWYSQVITK Unmodified 1822.9101 0.91012895 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 1 By MS/MS By MS/MS 7 0 3 2 1 69.402 69.766 3 2.8032E-19 23469 20211116_3435_TMUAki_TMT10x_P_F7 166.35 132.26 20890000 33597000 66093 36115000 26899000 26656000 27710000 13710000 11394000 16389000 25238000 19450000 31359000 1766600 36524000 25809000 27448000 27560000 14673000 12797000 15896000 23918000 4 4 1 4 4 4 4 4 4 4 4 9983800 15420000 66093 16180000 14389000 17122000 15386000 5771700 5009800 6899500 11437000 9295700 14391000 867080 16466000 13821000 17130000 15233000 6474900 5778800 6691900 10834000 2 2 1 2 2 2 2 2 2 2 2 10906000 18177000 0 19935000 12510000 9533600 12324000 7938100 6384400 9489800 13802000 10155000 16968000 899490 20057000 11989000 10318000 12327000 8197900 7018100 9204300 13084000 2 2 0 2 2 2 2 2 2 2 2 1770500000 939830000 830680000 9964 542 9259 53043;53044;53045 64161;64162;64163;64164;64165 64162 5 KEEQEVQATLESEEVDLNAGLHGNWTLENAK Unmodified 3480.6645 0.66448553 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 1 By MS/MS 3 0.816 1 1 1 3 76.733 76.676 4 0.00071772 25388 20211116_3431_TMUAki_TMT10x_P_F4 57.825 49.627 2675600 4177200 0 3642700 1924000 3822800 2966600 1580300 1556300 1944900 2585900 2491300 3895800 207510 3756600 1870800 3833000 2911000 1730800 1681500 1884500 2462700 1 1 0 1 1 1 1 1 1 1 1 2675600 4177200 0 3642700 1924000 3822800 2966600 1580300 1556300 1944900 2585900 2491300 3895800 207510 3756600 1870800 3833000 2911000 1730800 1681500 1884500 2462700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4581900000 4581900000 0 9965 1546 9260 53046;53047;53048 64166 64166 1 KEESEESDDDMGFGLFD Oxidation (M) 1964.7469 0.74694752 507;506 P05387;P05386-2;P05386 RPLP2;RPLP1 60S acidic ribosomal protein P2;60S acidic ribosomal protein P1 no no 0 0 1 1 By MS/MS 1 0 1 1 65.932 65.694 3 4.411E-06 22491 20211116_3439_TMUAki_TMT10x_S_F1 98.507 94.265 3418700 6525200 0 4976600 4590100 4165100 3481100 8099500 6565100 8068200 5365900 3182900 6082900 270730 5174200 4371400 4381600 3684500 8035500 6501400 7881100 5213400 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3418700 6525200 0 4976600 4590100 4165100 3481100 8099500 6565100 8068200 5365900 3182900 6082900 270730 5174200 4371400 4381600 3684500 8035500 6501400 7881100 5213400 2 2 0 2 2 2 2 2 2 2 2 501980000 0 501980000 9966 507;506 9261 53049 64167;64168 64168 409 2 KEFSIDVGYER Unmodified 1341.6565 0.65648044 1296 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 0 1 By MS/MS 5 0 1 1 48.335 48.507 3 0.034748 12923 20211116_3444_TMUAki_TMT10x_S_F5 52.5 1.2893 3741600 6296800 69953 6626600 4065600 3427400 3431100 5139400 4658300 4655500 5361900 3484300 5876800 379930 6689100 3886600 3727400 3551500 5124500 4710300 4566700 5150600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3741600 6296800 69953 6626600 4065600 3427400 3431100 5139400 4658300 4655500 5361900 3484300 5876800 379930 6689100 3886600 3727400 3551500 5124500 4710300 4566700 5150600 1 1 1 1 1 1 1 1 1 1 1 237440000 0 237440000 9967 1296 9262 53050 64169 64169 1 KEFSPFGTITSAK Unmodified 1411.7347 0.73473076 634 P11940;P11940-2 PABPC1 Polyadenylate-binding protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 3.29 3.01 3 2 2 3 4 55.87 55.756 3 1.7433E-09 16313 20211116_3428_TMUAki_TMT10x_P_F1 135.47 108.13 68977000 122510000 1126700 112390000 126160000 169410000 91599000 153880000 115460000 115960000 112090000 64223000 114280000 6338900 116220000 120090000 168710000 95459000 156100000 116300000 114820000 108240000 7 7 5 7 7 7 7 7 7 7 7 46111000 80540000 1079000 75637000 98353000 144760000 72628000 99752000 75311000 78234000 75530000 42940000 75134000 5286900 78542000 93707000 142200000 75098000 103050000 76507000 77294000 72854000 5 5 4 5 5 5 5 5 5 5 5 22866000 41975000 47625 36749000 27808000 24645000 18971000 54126000 40153000 37729000 36565000 21283000 39148000 1052100 37678000 26382000 26516000 20361000 53053000 39795000 37524000 35384000 2 2 1 2 2 2 2 2 2 2 2 5608600000 3736600000 1872000000 9968 634 9263 53051;53052;53053;53054;53055;53056;53057 64170;64171;64172;64173;64174;64175;64176;64177 64170 8 KEGEEEEENTEEPPQGEEEESMETQE Oxidation (M) 3067.1732 0.17315326 1575 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 1 1 By MS/MS By matching 1 0 2 1 1 35.38 35.363 4 1.323E-08 8172 20211116_3428_TMUAki_TMT10x_P_F1 93.966 91.602 159840 200920 3447.7 635660 2018600 551500 327210 148090 309310 113900 390170 148780 189110 33914 616510 1892700 557960 419780 169900 318320 112650 373880 2 2 1 2 2 2 2 2 2 2 2 159840 200920 3447.7 635660 2018600 551500 327210 148090 309310 113900 390170 148780 189110 33914 616510 1892700 557960 419780 169900 318320 112650 373880 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 74851000 66014000 8837100 9969 1575 9264 53058;53059 64178;64179 64179 2123 2 KEGGLGPLNIPLLADVTR Unmodified 1862.0625 0.062547262 899 P32119 PRDX2 Peroxiredoxin-2 yes yes 0 0 0 1 By MS/MS By MS/MS 3.25 2.15 8 19 20 1 2 2 7 29 30 44.481 44.398 3 5.4543E-58 25029 20211116_3428_TMUAki_TMT10x_P_F1 249.06 230.61 196060000 331760000 1365700 290030000 225830000 312700000 255230000 203420000 192470000 216210000 248520000 182550000 309410000 16513000 299160000 217260000 314710000 255410000 212720000 200540000 210640000 238000000 72 72 38 72 72 72 72 72 72 72 72 105740000 174970000 688280 151660000 103010000 199840000 129850000 109930000 102380000 114340000 131480000 98453000 163180000 8693200 157090000 99445000 198590000 129460000 116440000 106390000 111490000 125930000 33 33 13 33 33 33 33 33 33 33 33 90321000 156780000 677430 138370000 122820000 112870000 125380000 93494000 90091000 101870000 117050000 84096000 146230000 7819500 142080000 117820000 116120000 125960000 96287000 94153000 99150000 112080000 39 39 25 39 39 39 39 39 39 39 39 68361000000 38900000000 29461000000 9970 899 9265 53060;53061;53062;53063;53064;53065;53066;53067;53068;53069;53070;53071;53072;53073;53074;53075;53076;53077;53078;53079;53080;53081;53082;53083;53084;53085;53086;53087;53088;53089;53090;53091;53092;53093;53094;53095;53096;53097;53098;53099;53100;53101;53102;53103;53104;53105;53106;53107;53108;53109;53110;53111;53112;53113;53114;53115;53116;53117;53118 64180;64181;64182;64183;64184;64185;64186;64187;64188;64189;64190;64191;64192;64193;64194;64195;64196;64197;64198;64199;64200;64201;64202;64203;64204;64205;64206;64207;64208;64209;64210;64211;64212;64213;64214;64215;64216;64217;64218;64219;64220;64221;64222;64223;64224;64225;64226;64227;64228;64229;64230;64231;64232;64233;64234;64235;64236;64237;64238;64239;64240;64241;64242;64243;64244;64245;64246;64247;64248;64249;64250;64251;64252;64253;64254;64255;64256;64257;64258;64259;64260;64261;64262;64263;64264 64181 85 KEGGLGPLNIPLLADVTRR Unmodified 2018.1637 0.16365829 899 P32119 PRDX2 Peroxiredoxin-2 yes yes 0 0 0 2 By MS/MS By MS/MS 2.94 0.639 4 10 3 10 7 62.964 62.804 3;4 4.7997E-24 22352 20211116_3442_TMUAki_TMT10x_S_F4 175.33 157.78 45349000 68473000 507960 67071000 48191000 80757000 54592000 47268000 47397000 48054000 54717000 42223000 63887000 3580200 68727000 46355000 80673000 54818000 49772000 48793000 46900000 52557000 16 16 13 16 16 16 16 16 16 16 16 38302000 56048000 378130 55641000 37975000 72815000 46141000 38359000 39397000 40396000 45439000 35660000 52297000 2830600 57048000 36596000 72345000 46167000 40800000 40589000 39369000 43647000 13 13 10 13 13 13 13 13 13 13 13 7047300 12425000 129830 11430000 10216000 7942400 8451400 8908900 8000300 7658400 9277700 6562700 11590000 749650 11678000 9758900 8328100 8650900 8971800 8204000 7531100 8910300 3 3 3 3 3 3 3 3 3 3 3 33992000000 16296000000 17695000000 9971 899 9266 53119;53120;53121;53122;53123;53124;53125;53126;53127;53128;53129;53130;53131;53132;53133;53134;53135 64265;64266;64267;64268;64269;64270;64271;64272;64273;64274;64275;64276;64277;64278;64279;64280;64281;64282;64283;64284 64283 20 KEGKPTIVEEDDPELFK Unmodified 1972.9993 0.99933788 370 O75937 DNAJC8 DnaJ homolog subfamily C member 8 yes yes 0 0 0 2 By MS/MS By MS/MS 5 0.816 1 1 1 2 1 51.903 52.069 4 1.4828E-10 14741 20211116_3445_TMUAki_TMT10x_S_F6 124.22 94.456 18537000 31659000 437590 35289000 41170000 46812000 26679000 26767000 30824000 24294000 26251000 17263000 29555000 2250700 35916000 39137000 46527000 27948000 28152000 31015000 23828000 25465000 6 6 4 6 6 6 6 6 6 6 6 16664000 28445000 364160 31485000 39783000 45345000 25575000 24220000 27820000 21897000 23503000 15519000 26553000 2033800 32112000 37810000 44865000 26754000 25622000 28051000 21482000 22806000 5 5 3 5 5 5 5 5 5 5 5 1872600 3214500 73433 3803800 1386800 1467100 1104100 2546900 3004500 2396200 2747900 1744200 3001600 216890 3804000 1327100 1663000 1193600 2530600 2964300 2346400 2658800 1 1 1 1 1 1 1 1 1 1 1 1700400000 1522800000 177600000 9972 370 9267 53136;53137;53138 64285;64286;64287;64288;64289;64290 64290 6 KEHVNVVFIGHVDAGK Unmodified 1747.937 0.93695282 681 P15170-3;P15170-2;P15170;Q8IYD1 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes no 0 0 0 1 By matching By MS/MS 7.33 0.471 2 1 1 2 41.392 41.789 5 3.1522E-05 12520 20211116_3446_TMUAki_TMT10x_S_F7 86.479 73.712 2342500 4326500 17536 3278500 2708000 2626900 2648500 3277600 3004500 2879400 3508800 2181200 4033200 208020 3408900 2595600 2731000 2700600 3287700 3058900 2828600 3369200 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2342500 4326500 17536 3278500 2708000 2626900 2648500 3277600 3004500 2879400 3508800 2181200 4033200 208020 3408900 2595600 2731000 2700600 3287700 3058900 2828600 3369200 3 3 1 3 3 3 3 3 3 3 3 742600000 130290000 612310000 9973 681 9268 53139;53140;53141 64291;64292;64293 64291 3 KENPLQFK Unmodified 1002.5498 0.54983053 682;926 P15311;P35241;P35241-5;P35241-3 EZR;RDX Ezrin;Radixin no no 0 0 0 1 By MS/MS 8 0 1 1 43.649 43.66 3 0.0046601 11046 20211116_3447_TMUAki_TMT10x_S_F8 87.149 62.927 1091900 1895100 26481 2140400 1185500 1070600 1178800 1745000 1658700 1347100 1924300 1016800 1769300 116510 2150300 1138100 1171800 1210900 1728300 1675900 1332000 1848100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1091900 1895100 26481 2140400 1185500 1070600 1178800 1745000 1658700 1347100 1924300 1016800 1769300 116510 2150300 1138100 1171800 1210900 1728300 1675900 1332000 1848100 1 1 1 1 1 1 1 1 1 1 1 87412000 0 87412000 9974 682;926 9269 53142 64294 64294 1 KEPAVLELEGK Unmodified 1211.6762 0.67615325 1482 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 49.065 49.233 3 5.7629E-06 13231 20211116_3444_TMUAki_TMT10x_S_F5 105.14 75.792 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9975 1482 9270 53143;53144;53145;53146 64295;64296;64297;64298 64298 4 KEPFFHGHDNYDQLVR Unmodified 2000.9493 0.94930842 1419 P68400;P68400-2 CSNK2A1 Casein kinase II subunit alpha yes no 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 40.867 40.964 4 9.1501E-23 10035 20211116_3445_TMUAki_TMT10x_S_F6 179.46 161.09 2469900 4481600 119290 5190900 4720200 5036900 2875800 3842400 3496400 3221800 3661300 2300600 4184500 347470 5243200 4486800 5113900 3032700 3948400 3535600 3172100 3526900 3 3 3 3 3 3 3 3 3 3 3 1612100 2878200 79283 3287000 3916500 4306600 2274200 2359500 2111400 2009600 2171000 1501600 2687200 239820 3339700 3718800 4280600 2387600 2486800 2157200 1977100 2092500 1 1 1 1 1 1 1 1 1 1 1 857840 1603400 40011 1903900 803710 730350 601680 1482900 1384900 1212300 1490300 799030 1497300 107650 1903500 767970 833330 645120 1461600 1378400 1195100 1434400 2 2 2 2 2 2 2 2 2 2 2 491910000 404000000 87908000 9976 1419 9271 53147;53148 64299;64300;64301 64300 3 KEPVDEDLYPEHYRK Unmodified 1916.9268 0.92684164 811 P26358;P26358-2;P26358-3 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 0 0 0 2 By MS/MS 5 0 1 1 37.546 37.535 5 0.00070029 9729 20211116_3433_TMUAki_TMT10x_P_F5 76.341 57.018 760680 1260400 18401 1659900 2522800 1967100 1187600 964810 1180000 740100 1022400 708410 1177600 104900 1669800 2386600 1962500 1274200 1024800 1195200 732080 991140 1 1 1 1 1 1 1 1 1 1 1 760680 1260400 18401 1659900 2522800 1967100 1187600 964810 1180000 740100 1022400 708410 1177600 104900 1669800 2386600 1962500 1274200 1024800 1195200 732080 991140 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 118630000 118630000 0 9977 811 9272 53149 64302 64302 1 KEQTADGVAVIPVLQR Unmodified 1722.9628 0.96283322 3157 Q9UKK9 NUDT5 ADP-sugar pyrophosphatase yes yes 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 51.065 51.362 3 2.6735E-35 13974 20211116_3434_TMUAki_TMT10x_P_F6 199.49 170.7 8021600 13645000 108940 15328000 14028000 18128000 10377000 14028000 15826000 14177000 12901000 7468600 12739000 723240 15560000 13358000 18203000 10886000 14474000 15758000 13840000 12536000 3 3 2 3 3 3 3 3 3 3 3 5164700 8291700 44344 9464200 11205000 14922000 7956700 8755700 9811700 8764400 7889800 4808200 7741400 426660 9653800 10657000 14726000 8298200 9213700 9832400 8559400 7670500 2 2 1 2 2 2 2 2 2 2 2 2856800 5353400 64599 5863900 2823000 3206400 2420700 5272400 6013800 5412900 5011100 2660400 4997200 296580 5906400 2700600 3476800 2587700 5260600 5925200 5280800 4865100 1 1 1 1 1 1 1 1 1 1 1 1020700000 660790000 359890000 9978 3157 9273 53150;53151;53152 64303;64304;64305;64306 64304 4 KESESCDCLQGFQLTHSLGGGTGSGMGTLLISK Oxidation (M) 3470.6116 0.6116038 1668;2689 Q13885;Q9BVA1 TUBB2A;TUBB2B Tubulin beta-2A chain;Tubulin beta-2B chain no no 0 0 1 1 By MS/MS 7 0 1 1 61.896 62.591 4 1.4763E-10 20416 20211116_3435_TMUAki_TMT10x_P_F7 85.412 74.509 2223500 4255700 23090 2815000 2376400 8206500 2913500 4976000 4516100 5034600 3589800 2070400 3965600 188470 3054100 2292200 7955000 2976800 5224000 4491400 4914700 3491600 2 2 1 2 2 2 2 2 2 2 2 2223500 4255700 23090 2815000 2376400 8206500 2913500 4976000 4516100 5034600 3589800 2070400 3965600 188470 3054100 2292200 7955000 2976800 5224000 4491400 4914700 3491600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1091800000 1091800000 0 9979 1668;2689 9274 53153 64307;64308 64307 2238 2 KESESCDCLQGFQLTHSLGGGTGSGMGTLLISK Unmodified 3454.6167 0.61668918 1668;2689 Q13885;Q9BVA1 TUBB2A;TUBB2B Tubulin beta-2A chain;Tubulin beta-2B chain no no 0 0 0 1 By matching By MS/MS 8 0 2 1 1 68.55 68.526 4 1.1463E-27 21192 20211116_3447_TMUAki_TMT10x_S_F8 145.16 125.65 2498900 4821900 55510 4039200 3842600 2975000 3089500 1539600 985580 2120900 2941800 2327100 4496400 277730 4160000 3668900 3064100 3108000 1655200 1164100 2047400 2777200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2498900 4821900 55510 4039200 3842600 2975000 3089500 1539600 985580 2120900 2941800 2327100 4496400 277730 4160000 3668900 3064100 3108000 1655200 1164100 2047400 2777200 1 1 1 1 1 1 1 1 1 1 1 1830200000 1104500000 725670000 9980 1668;2689 9274 53154;53155 64309 64309 1 KESYSIYVYK Unmodified 1278.6496 0.64960415 528;2191 P33778;Q16778;P23527;P06899;Q6DRA6;Q6DN03;Q8N257 HIST1H2BB;HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST2H2BD;HIST2H2BC;HIST3H2BB Histone H2B type 1-B;Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 3-B no no 0 0 0 1 By MS/MS By MS/MS 4.61 2.76 7 2 2 3 1 2 5 6 14 14 48.553 48.614 2;3;4 6.9114E-10 15311 20211116_3446_TMUAki_TMT10x_S_F7 166.97 124.86 450650000 640390000 2341600 706220000 837820000 848890000 497200000 648490000 594760000 569190000 613540000 419610000 597800000 43141000 717940000 794810000 851480000 525160000 667080000 601470000 559170000 591280000 37 37 21 37 37 37 37 37 37 37 37 312640000 430670000 916030 481270000 675240000 710650000 340020000 438580000 423330000 394050000 428110000 291090000 402050000 30346000 490830000 638980000 703700000 365000000 458320000 427190000 386680000 412830000 20 20 9 20 20 20 20 20 20 20 20 138020000 209720000 1425500 224950000 162590000 138230000 157180000 209910000 171430000 175140000 185430000 128520000 195750000 12795000 227120000 155820000 147780000 160160000 208760000 174270000 172490000 178440000 17 17 12 17 17 17 17 17 17 17 17 245050000000 134110000000 110940000000 9981 528;2191 9275 53156;53157;53158;53159;53160;53161;53162;53163;53164;53165;53166;53167;53168;53169;53170;53171;53172;53173;53174;53175;53176;53177;53178;53179;53180;53181;53182;53183 64310;64311;64312;64313;64314;64315;64316;64317;64318;64319;64320;64321;64322;64323;64324;64325;64326;64327;64328;64329;64330;64331;64332;64333;64334;64335;64336;64337;64338;64339;64340;64341;64342;64343;64344;64345;64346;64347;64348;64349;64350 64344 41 KESYSVYVYK Unmodified 1264.634 0.63395408 290;2613 Q93079;Q99877;P62807;P58876;O60814;Q5QNW6;Q99879;Q5QNW6-2;P57053;Q99880 HIST1H2BH;HIST1H2BN;HIST1H2BC;HIST1H2BD;HIST1H2BK;HIST2H2BF;HIST1H2BM;H2BFS;HIST1H2BL Histone H2B type 1-H;Histone H2B type 1-N;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type 2-F;Histone H2B type 1-M;Histone H2B type F-S;Histone H2B type 1-L no no 0 0 0 1 By MS/MS By MS/MS 5.66 2.65 4 3 2 1 2 2 5 13 18 14 51.405 51.482 2;3;4 2.6226E-10 14310 20211116_3439_TMUAki_TMT10x_S_F1 177.78 125.3 838840000 1242800000 4012000 1262200000 1316200000 1090100000 980090000 1024000000 1020000000 865090000 1052300000 781010000 1159700000 71235000 1283700000 1253200000 1119600000 1013000000 1039700000 1037000000 851440000 1014100000 38 38 25 38 38 38 38 38 38 38 38 232640000 344260000 2687200 354840000 530000000 494300000 255890000 292630000 305900000 256780000 299100000 216610000 321270000 23540000 363330000 501300000 490430000 275440000 306630000 308770000 252260000 288740000 24 24 15 24 24 24 24 24 24 24 24 606210000 898520000 1324800 907310000 786150000 595770000 724200000 731380000 714050000 608310000 753240000 564400000 838450000 47695000 920330000 751910000 629190000 737520000 733090000 728260000 599170000 725410000 14 14 10 14 14 14 14 14 14 14 14 274200000000 153110000000 121090000000 9982 290;2613 9276 53184;53185;53186;53187;53188;53189;53190;53191;53192;53193;53194;53195;53196;53197;53198;53199;53200;53201;53202;53203;53204;53205;53206;53207;53208;53209;53210;53211;53212;53213;53214;53215 64351;64352;64353;64354;64355;64356;64357;64358;64359;64360;64361;64362;64363;64364;64365;64366;64367;64368;64369;64370;64371;64372;64373;64374;64375;64376;64377;64378;64379;64380;64381;64382;64383;64384;64385;64386;64387;64388;64389;64390;64391;64392;64393;64394;64395 64381 45 KETGAASFLCR Unmodified 1238.6078 0.60775611 848 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 38.294 38.678 3 0.00031024 8900 20211116_3447_TMUAki_TMT10x_S_F8 88.092 65.764 1378700 2182600 25239 2481800 3857900 3095500 1784900 2198600 2388000 1740200 2288100 1283900 2037800 172550 2519800 3648600 3095500 1937600 2266900 2399400 1718500 2210400 4 4 4 4 4 4 4 4 4 4 4 1082300 1628200 12530 1831800 3543700 2831100 1477000 1611800 1805000 1323400 1727300 1007800 1520100 135880 1869300 3346700 2795100 1616400 1691700 1819200 1304400 1668600 3 3 3 3 3 3 3 3 3 3 3 296450 554420 12708 649920 314180 264450 307960 586770 582980 416830 560870 276110 517690 36669 650510 301860 300420 321220 575230 580260 414100 541730 1 1 1 1 1 1 1 1 1 1 1 67744000 53239000 14505000 9983 848 9277 53216;53217;53218 64396;64397;64398;64399 64399 4 KETPPPLVPPAAR Unmodified 1371.7874 0.78743503 2627 Q9BQA1;Q9BQA1-2 WDR77 Methylosome protein 50 yes no 0 0 0 1 By MS/MS By matching 7.5 0.5 1 1 1 1 37.805 38.244 3 0.00020818 10586 20211116_3435_TMUAki_TMT10x_P_F7 86.756 61.539 219040 320080 0 361370 529440 525840 285170 314590 324270 262590 314960 203930 298820 20559 368200 501380 520800 303250 328960 327850 258600 304120 1 1 0 1 1 1 1 1 1 1 1 219040 320080 0 361370 529440 525840 285170 314590 324270 262590 314960 203930 298820 20559 368200 501380 520800 303250 328960 327850 258600 304120 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24803000 18279000 6524200 9984 2627 9278 53219;53220 64400 64400 1 KFADGEVVR Unmodified 1019.54 0.53999412 1732 Q14739 LBR Lamin-B receptor yes yes 0 0 0 1 By MS/MS 5 0 1 1 33.527 33.705 3 0.018975 6991 20211116_3444_TMUAki_TMT10x_S_F5 59.198 29.851 511010 903780 2279.3 897920 615380 514940 628850 576880 620830 515380 746490 475820 843300 45952 910710 590530 549600 636920 581560 636400 505880 716220 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 511010 903780 2279.3 897920 615380 514940 628850 576880 620830 515380 746490 475820 843300 45952 910710 590530 549600 636920 581560 636400 505880 716220 1 1 1 1 1 1 1 1 1 1 1 17406000 0 17406000 9985 1732 9279 53221 64401 64401 1 KFAEAFEAIPR Unmodified 1277.6768 0.67682195 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 1 By MS/MS By MS/MS 5.2 3.43 2 3 3 2 57.008 57 2;3 8.7164E-07 16859 20211116_3428_TMUAki_TMT10x_P_F1 132.59 111.34 50581000 73504000 181190 94791000 52589000 58293000 44007000 40592000 44018000 41961000 52861000 47095000 68666000 4120500 94653000 50202000 61239000 45087000 42206000 45094000 40925000 50719000 6 6 4 6 6 6 6 6 6 6 6 24421000 35193000 152690 43664000 32321000 41734000 24076000 21057000 22341000 21102000 25637000 22738000 32871000 2155100 43918000 30785000 42171000 24799000 22454000 22921000 20607000 24629000 4 4 3 4 4 4 4 4 4 4 4 26160000 38311000 28493 51126000 20268000 16559000 19931000 19536000 21677000 20859000 27224000 24357000 35796000 1965400 50735000 19417000 19068000 20289000 19752000 22173000 20318000 26091000 2 2 1 2 2 2 2 2 2 2 2 8848000000 5056400000 3791600000 9986 1146 9280 53222;53223;53224;53225;53226 64402;64403;64404;64405;64406;64407 64402 6 KFAETQPK Unmodified 947.50763 0.50763136 821 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 1 By MS/MS 5 0 1 1 33.03 32.975 3 0.066724 7885 20211116_3433_TMUAki_TMT10x_P_F5 47.732 5.623 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9987 821 9281 53227 64408 64408 1 KFAMEPEEFDSDTLR Oxidation (M) 1829.8142 0.81417965 654 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 1 1 By MS/MS 4 0 1 1 49.27 49.424 3 6.7097E-05 14589 20211116_3442_TMUAki_TMT10x_S_F4 86.777 77.727 1724000 3053400 22963 3386700 1151300 1330400 1243300 1740600 2141000 1793700 2295200 1605400 2850400 156310 3400700 1107700 1491400 1284200 1750600 2144200 1749700 2209300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1724000 3053400 22963 3386700 1151300 1330400 1243300 1740600 2141000 1793700 2295200 1605400 2850400 156310 3400700 1107700 1491400 1284200 1750600 2144200 1749700 2209300 1 1 1 1 1 1 1 1 1 1 1 126100000 0 126100000 9988 654 9282 53228 64409 64409 715 1 KFAMEPEEFDSDTLR Unmodified 1813.8193 0.81926503 654 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 1 By MS/MS 4 0 1 1 57.73 57.657 3 6.3703E-07 17987 20211116_3442_TMUAki_TMT10x_S_F4 101.67 89.692 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9989 654 9282 53229 64410 64410 1 KFAYLGR Unmodified 853.48102 0.48102268 983 P40429 RPL13A 60S ribosomal protein L13a yes yes 0 0 0 1 By MS/MS By MS/MS 4 0.707 1 2 1 1 3 39.273 39.22 3 0.002479 10138 20211116_3431_TMUAki_TMT10x_P_F4 111.04 86.217 1504200 2470200 4371.1 2452700 1607800 1271800 1373900 2201700 2208900 1734200 2192200 1400500 2304900 122520 2485800 1535600 1389400 1431600 2177700 2210000 1712900 2115200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1504200 2470200 4371.1 2452700 1607800 1271800 1373900 2201700 2208900 1734200 2192200 1400500 2304900 122520 2485800 1535600 1389400 1431600 2177700 2210000 1712900 2115200 2 2 1 2 2 2 2 2 2 2 2 195890000 0 195890000 9990 983 9283 53230;53231;53232;53233 64411;64412;64413;64414 64411 4 KFDDGEDPLDAESQQGGGGNPFHR Unmodified 2572.1215 0.12147172 1610 Q13217 DNAJC3 DnaJ homolog subfamily C member 3 yes yes 0 0 0 1 By MS/MS 4 0 1 1 49.996 50.128 4 1.7206E-07 14873 20211116_3442_TMUAki_TMT10x_S_F4 85.387 80.963 1657000 3286300 0 3326400 1572800 1543600 1304400 2667500 2572300 2276100 2504900 1542600 3066600 111820 3364000 1499700 1707800 1376400 2643700 2559000 2239100 2418500 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1657000 3286300 0 3326400 1572800 1543600 1304400 2667500 2572300 2276100 2504900 1542600 3066600 111820 3364000 1499700 1707800 1376400 2643700 2559000 2239100 2418500 2 2 0 2 2 2 2 2 2 2 2 290510000 0 290510000 9991 1610 9284 53234 64415;64416 64415 2 KFDEVLVNHFCEEFGK Unmodified 1996.9353 0.93529784 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 1 By MS/MS By MS/MS 5.75 1.39 2 2 1 2 1 5 3 67.131 67.271 4 2.4628E-15 21132 20211116_3436_TMUAki_TMT10x_P_F8 152.37 128.09 92083000 155040000 3112700 154340000 96358000 153770000 115830000 87151000 75553000 95553000 115320000 85760000 144660000 10288000 157490000 93051000 155190000 115230000 92223000 80036000 92976000 110010000 12 12 10 12 12 12 12 12 12 12 12 66584000 109160000 2955200 110600000 67530000 124340000 82928000 61544000 54510000 68264000 83185000 62018000 101860000 8287700 112930000 65317000 124410000 82433000 65943000 57715000 66393000 79358000 8 8 8 8 8 8 8 8 8 8 8 25500000 45878000 157470 43743000 28829000 29432000 32902000 25607000 21044000 27289000 32136000 23742000 42802000 2000300 44562000 27734000 30781000 32794000 26279000 22321000 26582000 30657000 4 4 2 4 4 4 4 4 4 4 4 12388000000 7289200000 5098700000 9992 916 9285 53235;53236;53237;53238;53239;53240;53241;53242 64417;64418;64419;64420;64421;64422;64423;64424;64425;64426;64427;64428 64424 12 KFDEVLVNHFCEEFGKK Unmodified 2125.0303 0.030260856 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 2 By MS/MS By MS/MS 5.38 2.69 2 1 1 2 2 5 3 62.123 62.309 4;5 7.9539E-16 18530 20211116_3447_TMUAki_TMT10x_S_F8 156.83 131.94 136740000 223650000 1336600 224720000 145070000 215730000 167530000 164910000 151530000 161140000 167500000 127310000 208690000 10132000 229040000 139580000 219190000 168260000 170120000 155430000 157530000 161090000 9 9 7 9 9 9 9 9 9 9 9 61725000 100660000 1001600 102620000 70034000 126160000 78495000 64129000 49273000 63376000 69988000 57479000 93932000 6123900 104900000 67423000 125670000 78274000 68310000 52141000 61927000 66873000 6 6 5 6 6 6 6 6 6 6 6 75019000 122990000 335010 122090000 75033000 89576000 89032000 100780000 102260000 97765000 97512000 69833000 114760000 4008500 124130000 72153000 93512000 89986000 101810000 103290000 95607000 94213000 3 3 2 3 3 3 3 3 3 3 3 16105000000 10826000000 5278800000 9993 916 9286 53243;53244;53245;53246;53247;53248;53249;53250 64429;64430;64431;64432;64433;64434;64435;64436 64436 8 KFDFDACNEVPPAPK Unmodified 1733.8083 0.80830641 1804;1683 Q15424;Q15424-3;Q15424-2;Q15424-4;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 no no 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 54.058 54.465 3 0.00010956 17086 20211116_3435_TMUAki_TMT10x_P_F7 81.311 69.145 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9994 1804;1683 9287 53251;53252 64437;64438 64437 2 KFDGVEGPR Unmodified 1003.5087 0.50869399 2013 Q6PKG0;Q6PKG0-3 LARP1 La-related protein 1 yes no 0 0 0 1 By MS/MS 5 0 1 1 32.738 32.902 3 0.004506 6670 20211116_3444_TMUAki_TMT10x_S_F5 73.499 52.036 221970 366790 1494.4 378940 251890 201960 256650 233640 252060 215910 299470 206680 342300 20214 383080 241730 217370 259940 235420 258310 211600 287420 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 221970 366790 1494.4 378940 251890 201960 256650 233640 252060 215910 299470 206680 342300 20214 383080 241730 217370 259940 235420 258310 211600 287420 1 1 1 1 1 1 1 1 1 1 1 6610600 0 6610600 9995 2013 9288 53253 64439 64439 1 KFDILVTTPNR Unmodified 1302.7296 0.7295858 3245 Q9Y2R4 DDX52 Probable ATP-dependent RNA helicase DDX52 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 52.069 51.815 3 0.00027843 16310 20211116_3429_TMUAki_TMT10x_P_F2 89.629 60.156 2413800 3866900 71188 4550500 4904700 5303100 3283900 2971200 3251300 3017400 3356100 2248000 3610800 301350 4605300 4666400 5303600 3414700 3140000 3312800 2945000 3234300 1 1 1 1 1 1 1 1 1 1 1 2413800 3866900 71188 4550500 4904700 5303100 3283900 2971200 3251300 3017400 3356100 2248000 3610800 301350 4605300 4666400 5303600 3414700 3140000 3312800 2945000 3234300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 300700000 300700000 0 9996 3245 9289 53254;53255 64440;64441 64440 2 KFDLGQDVIDFTGHALALYR Unmodified 2278.1746 0.17461691 1133;884 P50395;P50395-2;P31150 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha no no 0 0 0 1 By MS/MS By MS/MS 4.4 2.58 2 1 1 1 3 2 65.438 65.416 4 2.0938E-51 27332 20211116_3429_TMUAki_TMT10x_P_F2 228.85 213.61 21960000 34203000 139930 31563000 21096000 31959000 25190000 17656000 14872000 18233000 24016000 20446000 31905000 1706600 32392000 20324000 32212000 25018000 18690000 15906000 17784000 22885000 4 4 3 4 4 4 4 4 4 4 4 13202000 19323000 86.472 16156000 11112000 24002000 14408000 13146000 11173000 13043000 14390000 12291000 18018000 833040 16823000 10722000 23724000 14342000 13911000 11623000 12743000 13782000 2 2 1 2 2 2 2 2 2 2 2 8757700 14881000 139840 15406000 9983900 7956500 10782000 4509900 3699100 5189800 9625800 8155400 13887000 873580 15569000 9601500 8487600 10675000 4779700 4283400 5040700 9102200 2 2 2 2 2 2 2 2 2 2 2 10173000000 5288900000 4883700000 9997 1133;884 9290 53256;53257;53258;53259;53260 64442;64443;64444;64445 64442 4 KFDLNSPWEAFPVYR Unmodified 1867.9257 0.92571943 338 O75489 NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes yes 0 0 0 1 By matching By MS/MS 2 0 2 1 1 76.087 76.007 3 8.0567E-24 24833 20211116_3440_TMUAki_TMT10x_S_F2 187.04 162.57 13220000 22081000 368600 19684000 16111000 13915000 17355000 7580700 6371800 8293600 13802000 12312000 20595000 1480100 20164000 15502000 14390000 17199000 8048600 7226500 8070600 13084000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13220000 22081000 368600 19684000 16111000 13915000 17355000 7580700 6371800 8293600 13802000 12312000 20595000 1480100 20164000 15502000 14390000 17199000 8048600 7226500 8070600 13084000 3 3 3 3 3 3 3 3 3 3 3 1683600000 884460000 799110000 9998 338 9291 53261;53262 64446;64447;64448 64446 3 KFDQLLAEEK Unmodified 1219.6449 0.64485312 934;935;2078 P35579;P35579-2;P35580;P35580-2;P35580-5;P35580-3;P35580-4;Q7Z406;Q7Z406-6;Q7Z406-2 MYH9;MYH10;MYH14 Myosin-9;Myosin-10;Myosin-14 no no 0 0 0 1 By MS/MS By matching 5.33 0.471 2 1 2 1 53.619 53.779 3 0.00066322 14998 20211116_3434_TMUAki_TMT10x_P_F6 93.766 53.177 23271000 36305000 423980 43614000 62024000 58438000 33847000 30620000 31562000 26957000 33767000 21671000 33903000 2849200 44199000 58788000 57994000 35735000 32427000 32287000 26479000 32505000 4 4 3 4 4 4 4 4 4 4 4 23271000 36305000 423980 43614000 62024000 58438000 33847000 30620000 31562000 26957000 33767000 21671000 33903000 2849200 44199000 58788000 57994000 35735000 32427000 32287000 26479000 32505000 4 4 3 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1328600000 1136900000 191690000 9999 934;935;2078 9292 53263;53264;53265 64449;64450;64451;64452 64452 4 KFDVNTSAVQVLIEHIGNLDR Unmodified 2367.2547 0.25465814 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 1 By MS/MS By MS/MS 3.23 2.52 3 5 2 1 2 6 7 72.881 72.849 3;4 2.222E-19 27094 20211116_3429_TMUAki_TMT10x_P_F2 149.71 134.47 37555000 60977000 489280 59392000 39222000 64162000 44719000 37836000 38915000 42544000 44234000 34971000 56892000 3186200 60773000 37775000 64478000 44893000 39939000 40032000 41357000 42507000 12 12 10 12 12 12 12 12 12 12 12 31447000 50510000 293180 49203000 31214000 56302000 36455000 30937000 32203000 35266000 36010000 29283000 47126000 2470500 50394000 30078000 56349000 36573000 32864000 33082000 34264000 34620000 6 6 4 6 6 6 6 6 6 6 6 6107700 10467000 196100 10189000 8007800 7860000 8263200 6899100 6712400 7278200 8224500 5688400 9765900 715750 10379000 7696500 8129200 8320400 7074300 6950300 7092600 7887000 6 6 6 6 6 6 6 6 6 6 6 25755000000 16974000000 8781100000 10000 1471 9293 53266;53267;53268;53269;53270;53271;53272;53273;53274;53275;53276;53277;53278 64453;64454;64455;64456;64457;64458;64459;64460;64461;64462;64463 64456 11 KFEEFQTDMAAHEERVNEVNQFAAK Oxidation (M) 2983.377 0.37703448 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 1 2 By MS/MS 6 0 1 1 48.582 48.678 5 1.5951E-07 12921 20211116_3434_TMUAki_TMT10x_P_F6 84.942 75.975 2390700 3857300 0 3856800 4982300 7133500 3563700 5285100 4685200 3793100 3574500 2225900 3599300 222210 3983600 4740800 7023500 3723700 5422100 4677900 3766000 3482600 1 1 0 1 1 1 1 1 1 1 1 2390700 3857300 0 3856800 4982300 7133500 3563700 5285100 4685200 3793100 3574500 2225900 3599300 222210 3983600 4740800 7023500 3723700 5422100 4677900 3766000 3482600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 815120000 815120000 0 10001 1663 9294 53279 64464 64464 2227 1 KFEEFQTDMAAHEERVNEVNQFAAK Unmodified 2967.3821 0.38211985 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 2 By matching By MS/MS 6 0 2 1 1 55.541 55.63 5 1.3924E-12 16140 20211116_3445_TMUAki_TMT10x_S_F6 120.67 105.03 6124900 11632000 167160 11935000 7798100 5861200 5766800 7469600 7188100 6778600 8444500 5704100 10855000 687020 12063000 7436300 6381800 5999800 7492700 7295100 6648800 8107200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6124900 11632000 167160 11935000 7798100 5861200 5766800 7469600 7188100 6778600 8444500 5704100 10855000 687020 12063000 7436300 6381800 5999800 7492700 7295100 6648800 8107200 2 2 2 2 2 2 2 2 2 2 2 857320000 376920000 480400000 10002 1663 9294 53280;53281 64465;64466 64465 2 KFFDANYDGKDYDPVAAR Unmodified 2090.9698 0.96976909 1824 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 2 By MS/MS By MS/MS 6.33 1.11 2 1 2 1 3 3 53.321 53.625 4 2.5094E-23 16767 20211116_3435_TMUAki_TMT10x_P_F7 166.61 149.33 45358000 90685000 385390 62955000 60327000 99112000 55587000 114130000 117340000 107070000 86089000 42233000 84515000 4097600 66724000 57733000 99076000 58543000 115070000 115560000 104860000 84015000 8 8 5 8 8 8 8 8 8 8 8 15118000 28283000 310170 20133000 29880000 54351000 28595000 38925000 37376000 34271000 26134000 14079000 26361000 1749200 21627000 28637000 52912000 29344000 40216000 37241000 33662000 25558000 3 3 3 3 3 3 3 3 3 3 3 30239000 62401000 75223 42822000 30446000 44760000 26992000 75203000 79963000 72801000 59955000 28155000 58154000 2348400 45098000 29096000 46163000 29199000 74853000 78321000 71201000 58456000 5 5 2 5 5 5 5 5 5 5 5 7339900000 3716000000 3623800000 10003 1824 9295 53282;53283;53284;53285;53286;53287 64467;64468;64469;64470;64471;64472;64473;64474 64468 8 KFFLSHPAYR Unmodified 1264.6717 0.671677 1140 P50570;P50570-3;P50570-2;P50570-5;P50570-4;Q9UQ16-5 DNM2 Dynamin-2 no no 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 39.086 39.171 4 0.0007148 9194 20211116_3434_TMUAki_TMT10x_P_F6 85.355 75.046 631230 1120800 12955 1226700 1717700 1590400 903300 1159500 1142600 895650 1005300 587830 1046200 79623 1249400 1627300 1588100 966250 1192700 1147000 885610 974000 2 2 2 2 2 2 2 2 2 2 2 417630 753590 7917.5 813160 1460200 1394100 703940 791210 784810 605550 675610 388910 703400 56605 834040 1381600 1370900 756080 829310 791000 599060 655110 1 1 1 1 1 1 1 1 1 1 1 213600 367180 5037.1 413580 257500 196300 199360 368270 357740 290100 329670 198920 342790 23018 415400 245750 217250 210160 363410 356010 286550 318890 1 1 1 1 1 1 1 1 1 1 1 93491000 43384000 50107000 10004 1140 9296 53288;53289 64475;64476 64475 2 KFGDPVVQSDMK Oxidation (M) 1365.6599 0.65985126 596 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 1 1 By MS/MS 6 0 1 1 40.385 40.402 3 0.035785 9631 20211116_3434_TMUAki_TMT10x_P_F6 42.958 28.8 2254800 3256100 29502 3968700 7013900 4903400 2879200 2746500 2903500 2196000 3265900 2099700 3040900 281090 4012400 6623100 4889100 3137500 2884800 2965600 2167400 3139300 2 2 2 2 2 2 2 2 2 2 2 2254800 3256100 29502 3968700 7013900 4903400 2879200 2746500 2903500 2196000 3265900 2099700 3040900 281090 4012400 6623100 4889100 3137500 2884800 2965600 2167400 3139300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100950000 100950000 0 10005 596 9297 53290 64477;64478 64478 571 2 KFGEAIGMGFPVK Unmodified 1379.7271 0.72714296 1428 P78347;P78347-2;P78347-4;P78347-3 GTF2I General transcription factor II-I yes no 0 0 0 1 By MS/MS 3 0 1 1 63.683 63.24 3 0.024654 22548 20211116_3441_TMUAki_TMT10x_S_F3 52.265 34.127 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10006 1428 9298 53291 64479 64479 1 KFGFEIIETK Unmodified 1210.6598 0.6597749 2762 Q9GZZ1;Q9GZZ1-2 NAA50 N-alpha-acetyltransferase 50 yes no 0 0 0 1 By MS/MS By MS/MS 7.75 0.433 1 3 1 3 60.527 61.021 3 1.5685E-07 18115 20211116_3447_TMUAki_TMT10x_S_F8 112.43 81.866 4760400 8500200 93377 7824900 5716100 5349700 6053200 6280900 5483500 5633300 6485200 4433100 7929000 495080 7993400 5495000 5623500 6104700 6319600 5639000 5528500 6225000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4760400 8500200 93377 7824900 5716100 5349700 6053200 6280900 5483500 5633300 6485200 4433100 7929000 495080 7993400 5495000 5623500 6104700 6319600 5639000 5528500 6225000 1 1 1 1 1 1 1 1 1 1 1 255220000 0 255220000 10007 2762 9299 53292;53293;53294;53295 64480;64481;64482;64483 64482 4 KFGGPGAR Unmodified 788.42932 0.42932146 1340 P62249 RPS16 40S ribosomal protein S16 yes yes 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 29.231 29.127 3 0.0011891 7179 20211116_3429_TMUAki_TMT10x_P_F2 113.7 113.7 5454900 8947400 25779 7343700 5573500 7341800 4958200 3482100 4338100 3991900 5882900 5079000 8342800 452210 7605000 5328500 7392700 5042300 3750400 4495200 3877700 5627200 5 5 2 5 5 5 5 5 5 5 5 3285400 5243800 25779 4313000 3318100 5453800 2512800 2062000 2746600 2444900 3511100 3059200 4889600 293730 4482800 3162600 5409300 2598200 2279100 2811100 2372000 3363400 3 3 2 3 3 3 3 3 3 3 3 2169500 3703500 0 3030700 2255400 1888000 2445400 1420100 1591500 1547100 2371900 2019800 3453300 158480 3122200 2165900 1983400 2444100 1471300 1684100 1505700 2263900 2 2 0 2 2 2 2 2 2 2 2 448610000 296820000 151790000 10008 1340 9300 53296;53297;53298;53299 64484;64485;64486;64487;64488 64485 5 KFGLTPEQFGENLR Unmodified 1634.8417 0.84165545 2047 Q7KZ85;Q7KZ85-3 SUPT6H Transcription elongation factor SPT6 yes no 0 0 0 1 By MS/MS By matching 8 0 2 1 1 57.453 57.517 3 5.2842E-14 17082 20211116_3436_TMUAki_TMT10x_P_F8 151.41 112.4 8521100 12385000 112130 12549000 10674000 15696000 9911900 8720400 8607700 8813500 10732000 7934800 11557000 841110 12837000 10222000 15639000 10054000 9221100 8889300 8603900 10287000 1 1 1 1 1 1 1 1 1 1 1 8521100 12385000 112130 12549000 10674000 15696000 9911900 8720400 8607700 8813500 10732000 7934800 11557000 841110 12837000 10222000 15639000 10054000 9221100 8889300 8603900 10287000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1382500000 907410000 475080000 10009 2047 9301 53300;53301 64489 64489 1 KFGNPGER Unmodified 903.45626 0.45626449 2368 Q92841;Q92841-3;Q92841-1;Q92841-2 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 0 1 By MS/MS 5 0 1 1 29.787 29.72 3 0.056228 6608 20211116_3433_TMUAki_TMT10x_P_F5 48.423 33.906 394340 618650 14521 517270 562310 721800 460890 395110 451820 514880 487030 367280 576880 48579 537920 537500 715370 472530 421790 461290 497920 468730 1 1 1 1 1 1 1 1 1 1 1 394340 618650 14521 517270 562310 721800 460890 395110 451820 514880 487030 367280 576880 48579 537920 537500 715370 472530 421790 461290 497920 468730 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14447000 14447000 0 10010 2368 9302 53302 64490 64490 1 KFGQGSR Unmodified 778.40859 0.40858602 1346 P62273;P62273-2 RPS29 40S ribosomal protein S29 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 27.325 27.064 3 0.0032241 6310 20211116_3429_TMUAki_TMT10x_P_F2 107.19 82.852 488270 832640 731.51 540210 482020 866590 588340 472730 455230 464510 557320 454590 775850 35584 576640 464540 853840 587100 500270 472570 454000 534460 2 2 1 2 2 2 2 2 2 2 2 405750 669400 0 420950 373100 777210 455770 387680 370900 374840 447310 377740 623690 27690 452320 359470 761040 455360 413440 383750 366610 429140 1 1 0 1 1 1 1 1 1 1 1 82528 163240 731.51 119260 108920 89376 132570 85054 84331 89672 110000 76848 152160 7893.6 124320 105080 92796 131740 86834 88815 87388 105320 1 1 1 1 1 1 1 1 1 1 1 21252000 14894000 6358100 10011 1346 9303 53303;53304 64491 64491 1 KFGTINIVHPK Unmodified 1252.7292 0.72919187 3335 Q9Y617;Q9Y617-2 PSAT1 Phosphoserine aminotransferase yes no 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 43.385 43.543 3 0.012316 11798 20211116_3431_TMUAki_TMT10x_P_F4 63.537 49.631 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10012 3335 9304 53305;53306 64492;64493 64492 2 KFGVVLDEIKPSSAPELQAVR Unmodified 2282.2634 0.26343191 119 O14579;O14579-3;O14579-2 COPE Coatomer subunit epsilon yes no 0 0 0 2 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 64.317 64.29 4 5.7459E-26 19840 20211116_3428_TMUAki_TMT10x_P_F1 162.81 153.28 53281000 85947000 432270 82356000 58819000 91117000 61534000 56320000 53062000 59690000 66609000 49609000 80185000 4453000 84402000 56464000 91502000 62012000 59119000 54833000 58157000 63836000 6 6 4 6 6 6 6 6 6 6 6 36480000 55928000 334480 53594000 36579000 70935000 41775000 37559000 34676000 39396000 44403000 33965000 52178000 2892800 55099000 35195000 70444000 41883000 39927000 35933000 38400000 42533000 4 4 2 4 4 4 4 4 4 4 4 16801000 30019000 97791 28762000 22240000 20182000 19759000 18761000 18386000 20294000 22206000 15644000 28006000 1560200 29303000 21268000 21057000 20129000 19192000 18900000 19757000 21303000 2 2 2 2 2 2 2 2 2 2 2 7457600000 3972500000 3485100000 10013 119 9305 53307;53308;53309;53310 64494;64495;64496;64497;64498;64499 64495 6 KFGYVDFESAEDLEK Unmodified 1775.8254 0.82539626 729 P19338 NCL Nucleolin yes yes 0 0 0 1 By MS/MS By MS/MS 4.42 1.6 2 2 4 14 8 4 2 2 26 12 63.085 63.06 3;4 5.8722E-30 20840 20211116_3433_TMUAki_TMT10x_P_F5 207.79 162.46 505130000 825400000 5426200 787750000 610360000 775190000 554930000 620970000 602270000 606480000 647770000 470340000 770040000 45180000 806100000 583970000 787030000 567260000 638710000 612250000 592910000 623470000 59 59 36 59 59 59 59 59 59 59 59 243640000 383700000 2791000 366240000 293120000 516990000 298160000 301870000 282990000 288420000 295530000 226860000 357970000 21273000 377120000 281210000 512540000 301710000 317370000 289000000 282240000 284700000 35 35 19 35 35 35 35 35 35 35 35 261490000 441700000 2635200 421500000 317240000 258200000 256770000 319100000 319280000 318060000 352240000 243480000 412080000 23907000 428990000 302760000 274480000 265550000 321330000 323250000 310670000 338770000 24 24 17 24 24 24 24 24 24 24 24 60575000000 32243000000 28332000000 10014 729 9306 53311;53312;53313;53314;53315;53316;53317;53318;53319;53320;53321;53322;53323;53324;53325;53326;53327;53328;53329;53330;53331;53332;53333;53334;53335;53336;53337;53338;53339;53340;53341;53342;53343;53344;53345;53346;53347;53348 64500;64501;64502;64503;64504;64505;64506;64507;64508;64509;64510;64511;64512;64513;64514;64515;64516;64517;64518;64519;64520;64521;64522;64523;64524;64525;64526;64527;64528;64529;64530;64531;64532;64533;64534;64535;64536;64537;64538;64539;64540;64541;64542;64543;64544;64545;64546;64547;64548;64549;64550;64551;64552;64553;64554;64555;64556;64557;64558;64559;64560;64561;64562;64563 64532 64 KFHTVSGSK Unmodified 989.52943 0.52942943 2601 Q99729-3;Q99729-2;Q99729;Q99729-4 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 29.786 29.679 4 0.00085037 7406 20211116_3429_TMUAki_TMT10x_P_F2 90.15 66.061 821140 1265600 9164.8 1113400 915300 1364700 922130 577310 701840 687050 942470 764580 1180400 71547 1150400 877950 1357100 928180 629990 732180 666490 901720 3 3 2 3 3 3 3 3 3 3 3 649040 967730 2080.3 827650 713770 1150800 697720 427240 552300 525860 702530 604280 902470 50264 859070 683700 1136200 704070 473850 573560 509520 673060 2 2 1 2 2 2 2 2 2 2 2 172100 297870 7084.4 285770 201530 213910 224410 150070 149540 161190 239940 160290 277900 21283 291320 194250 220910 224110 156130 158620 156970 228660 1 1 1 1 1 1 1 1 1 1 1 55307000 29751000 25556000 10015 2601 9307 53349;53350;53351;53352 64564;64565;64566 64565 3 KFIAYQFTDTPLQIK Unmodified 1811.9822 0.98217168 78 O00267;O00267-2 SUPT5H Transcription elongation factor SPT5 yes no 0 0 0 1 By MS/MS By MS/MS 4 0 3 2 1 71.117 71.102 3;4 3.6326E-14 23032 20211116_3431_TMUAki_TMT10x_P_F4 142.57 132.38 31125000 49297000 368920 48214000 34544000 48535000 35361000 33784000 31564000 33702000 37351000 28983000 45996000 2923900 49267000 33162000 49093000 35707000 35091000 32482000 32918000 35852000 6 6 4 6 6 6 6 6 6 6 6 20216000 30767000 165550 30125000 21041000 37077000 22576000 21998000 20700000 21485000 23524000 18824000 28707000 1793600 30881000 20220000 37004000 22762000 23112000 21241000 21004000 22605000 4 4 2 4 4 4 4 4 4 4 4 10909000 18530000 203370 18089000 13503000 11458000 12784000 11786000 10864000 12217000 13827000 10159000 17289000 1130300 18386000 12942000 12089000 12946000 11979000 11241000 11914000 13247000 2 2 2 2 2 2 2 2 2 2 2 1779800000 971970000 807850000 10016 78 9308 53353;53354;53355 64567;64568;64569;64570;64571;64572 64570 6 KFICISDLR Unmodified 1150.6169 0.61686423 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 1 By MS/MS 2 0 1 1 52.414 52.16 3 0.0015884 16499 20211116_3429_TMUAki_TMT10x_P_F2 82.417 56.405 2285200 3702100 72377 4306200 5038000 5699000 3057500 3023500 2944000 2842300 3363800 2128300 3456700 295470 4371200 4785200 5659700 3201400 3203600 3014900 2783400 3232000 1 1 1 1 1 1 1 1 1 1 1 2285200 3702100 72377 4306200 5038000 5699000 3057500 3023500 2944000 2842300 3363800 2128300 3456700 295470 4371200 4785200 5659700 3201400 3203600 3014900 2783400 3232000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 310570000 310570000 0 10017 1997 9309 53356 64573 64573 1 KFLDAGHK Unmodified 914.4974 0.49740102 868 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 29.789 29.624 4 0.060914 7354 20211116_3429_TMUAki_TMT10x_P_F2 41.189 9.8171 1881000 2999200 6193.2 2429000 2013500 2525500 2095800 1294600 1582700 1477300 2099200 1751300 2796400 140710 2519700 1931600 2539200 2105700 1383900 1650900 1435300 2009000 3 3 1 3 3 3 3 3 3 3 3 1480700 2284700 0 1821800 1591600 2143000 1511000 995220 1201600 1162900 1566600 1378500 2130200 101440 1896000 1522600 2137500 1527400 1074800 1248900 1128800 1500000 2 2 0 2 2 2 2 2 2 2 2 400370 714460 6193.2 607170 421930 382520 584760 299390 381070 314390 532590 372830 666270 39267 623630 409040 401680 578320 309050 401970 306430 509080 1 1 1 1 1 1 1 1 1 1 1 104170000 81762000 22404000 10018 868 9310 53357;53358;53359 64574;64575 64574 2 KFLDGIYVSEK Unmodified 1297.6918 0.69180331 904 P32969 RPL9 60S ribosomal protein L9 yes yes 0 0 0 1 By MS/MS By MS/MS 7.2 0.748 1 2 2 2 3 57.06 57.348 3 4.9262E-06 17067 20211116_3436_TMUAki_TMT10x_P_F8 118.24 94.516 60163000 118670000 1195200 102850000 119490000 155130000 88665000 133260000 111460000 108000000 108870000 56026000 110670000 6847800 106820000 113860000 154320000 92254000 135840000 112300000 106520000 105100000 6 6 5 6 6 6 6 6 6 6 6 35256000 71716000 1005500 62312000 87097000 127480000 64366000 79620000 64962000 64016000 64562000 32834000 66884000 4586100 65207000 83002000 124770000 66496000 82901000 66047000 63164000 62293000 3 3 3 3 3 3 3 3 3 3 3 24907000 46954000 189730 40537000 32388000 27649000 24299000 53644000 46500000 43987000 44304000 23192000 43789000 2261700 41615000 30858000 29546000 25758000 52940000 46256000 43357000 42807000 3 3 2 3 3 3 3 3 3 3 3 8777600000 4592000000 4185600000 10019 904 9311 53360;53361;53362;53363;53364 64576;64577;64578;64579;64580;64581 64578 6 KFLDGNEMTLADCNLLPK Oxidation (M) 2094.0126 0.012561881 3342 Q9Y696 CLIC4 Chloride intracellular channel protein 4 yes yes 0 0 1 1 By MS/MS 7 0 1 1 64.694 65.337 3 0.0064087 21571 20211116_3435_TMUAki_TMT10x_P_F7 54.288 46.666 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10020 3342 9312 53365 64582 64582 3291 1 KFLPLFDR Unmodified 1034.5913 0.59130141 1316 P61604 HSPE1 10 kDa heat shock protein, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 2.75 0.968 1 2 3 2 3 5 60.251 60.054 2;3 0.00067632 20245 20211116_3439_TMUAki_TMT10x_S_F1 109.29 69.289 56858000 98920000 470420 74876000 103520000 125640000 77764000 105980000 123600000 84659000 79032000 52939000 92213000 5206100 78015000 98601000 124430000 81644000 108100000 122140000 83560000 76835000 9 9 4 7 9 7 9 7 9 7 7 35633000 60200000 441390 51690000 65121000 109190000 54716000 74700000 66058000 59708000 54505000 33181000 56141000 3763900 54193000 62205000 106910000 56396000 77241000 66297000 58932000 52937000 4 4 3 4 4 4 4 4 4 4 4 21224000 38721000 29034 23186000 38399000 16458000 23047000 31277000 57538000 24951000 24527000 19758000 36072000 1442200 23822000 36396000 17514000 25248000 30863000 55841000 24629000 23898000 5 5 1 3 5 3 5 3 5 3 3 12214000000 6754900000 5458700000 10021 1316 9313 53366;53367;53368;53369;53370;53371;53372;53373 64583;64584;64585;64586;64587;64588;64589;64590;64591;64592;64593 64587 11 KFMADCPHTIGVEFGTR Oxidation (M) 1980.9186 0.91860192 1295 P61106 RAB14 Ras-related protein Rab-14 yes yes 0 0 1 1 By MS/MS 7 0.816 1 1 1 3 44.64 44.86 4 7.4337E-06 13699 20211116_3446_TMUAki_TMT10x_S_F7 96.805 79.726 2454700 4042800 29118 4420500 2699100 2309400 2412700 3835300 3571900 3121300 3566000 2285800 3773700 234070 4451400 2582600 2517200 2498200 3801100 3582900 3077900 3440200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2454700 4042800 29118 4420500 2699100 2309400 2412700 3835300 3571900 3121300 3566000 2285800 3773700 234070 4451400 2582600 2517200 2498200 3801100 3582900 3077900 3440200 2 2 2 2 2 2 2 2 2 2 2 484550000 0 484550000 10022 1295 9314 53374;53375;53376 64594;64595 64594 1743 2 KFMADCPHTIGVEFGTR Unmodified 1964.9237 0.92368729 1295 P61106 RAB14 Ras-related protein Rab-14 yes yes 0 0 0 1 By matching By MS/MS 8 0 2 1 1 49.733 49.726 4 0.00040637 13554 20211116_3447_TMUAki_TMT10x_S_F8 66.893 50.586 2706400 4471200 98175 4874900 2859800 2266700 2430700 3431200 3077700 2790000 3627000 2520600 4173700 318020 4905700 2737300 2496200 2508100 3410600 3122200 2751300 3481900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2706400 4471200 98175 4874900 2859800 2266700 2430700 3431200 3077700 2790000 3627000 2520600 4173700 318020 4905700 2737300 2496200 2508100 3410600 3122200 2751300 3481900 1 1 1 1 1 1 1 1 1 1 1 900690000 391370000 509320000 10023 1295 9314 53377;53378 64596 64596 1 KFMNPFNMPNLYQK 2 Oxidation (M) 1802.8484 0.84839709 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 2 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 57.5 57.656 3 0.00085078 17394 20211116_3431_TMUAki_TMT10x_P_F4 72.496 52.918 16662000 31163000 210350 26555000 27177000 48640000 23062000 55066000 51874000 41414000 33474000 15515000 29061000 1709200 27746000 25967000 48334000 24500000 55254000 50859000 41009000 32861000 8 8 6 8 8 8 8 8 8 8 8 10888000 19760000 162930 17339000 18292000 39888000 17276000 34601000 32516000 25954000 21398000 10139000 18429000 1150200 18197000 17523000 39125000 18049000 35187000 32018000 25704000 20986000 5 5 4 5 5 5 5 5 5 5 5 5773700 11403000 47417 9215200 8885200 8752900 5785700 20465000 19358000 15460000 12076000 5376200 10632000 558990 9548600 8444000 9208600 6450900 20067000 18841000 15305000 11875000 3 3 2 3 3 3 3 3 3 3 3 2094100000 1451400000 642710000 10024 897 9315 53379;53380;53381 64597;64598;64599;64600;64601;64602;64603;64604 64598 1106;1107 8 KFMNPFNMPNLYQK Oxidation (M) 1786.8535 0.85348246 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 1 1 By MS/MS By MS/MS 6 0 5 2 3 63.584 63.567 3 1.0699E-06 18544 20211116_3434_TMUAki_TMT10x_P_F6 95.417 84.759 8425000 15032000 93930 12301000 13360000 14902000 10962000 11815000 8335700 11614000 11987000 7845200 14017000 855150 12780000 12755000 14951000 11163000 12162000 8724600 11351000 11451000 3 3 3 3 3 3 3 3 3 3 3 2701700 4608800 27161 3658400 3882800 7771400 4341200 3939800 2778400 3597400 3919700 2515800 4296900 265850 3860800 3736200 7577200 4331200 4188800 2935500 3527500 3745800 1 1 1 1 1 1 1 1 1 1 1 5723300 10424000 66768 8642200 9477000 7130200 6620300 7875200 5557300 8016800 8067600 5329500 9719700 589300 8919700 9019200 7373800 6831700 7973600 5789100 7823800 7704800 2 2 2 2 2 2 2 2 2 2 2 1610200000 358910000 1251300000 10025 897 9315 53382;53383;53384;53385;53386 64605;64606;64607;64608;64609 64606 1106;1107 5 KFNALFAQGNYSEAAK Unmodified 1757.8737 0.87368386 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 2.69 2 2 2 2 5 3 56.515 56.392 3;4 3.8607E-21 16550 20211116_3428_TMUAki_TMT10x_P_F1 166.79 153.24 87634000 147640000 537620 161400000 123690000 143770000 94767000 123980000 117500000 110200000 118980000 81595000 137820000 7647600 163420000 117860000 147100000 98342000 126640000 118590000 108190000 114730000 15 15 7 15 15 15 15 15 15 15 15 44942000 74892000 161550 80146000 86640000 110230000 64369000 63125000 60142000 56010000 60044000 41843000 69902000 4045200 81841000 82497000 109380000 66326000 66345000 61366000 54995000 57925000 9 9 3 9 9 9 9 9 9 9 9 42692000 72751000 376070 81258000 37046000 33534000 30398000 60852000 57353000 54188000 58933000 39751000 67916000 3602500 81582000 35363000 37720000 32016000 60292000 57224000 53197000 56802000 6 6 4 6 6 6 6 6 6 6 6 19242000000 12522000000 6719700000 10026 1471 9316 53387;53388;53389;53390;53391;53392;53393;53394 64610;64611;64612;64613;64614;64615;64616;64617;64618;64619;64620;64621;64622;64623;64624 64610 15 KFPFCDGAHTK Unmodified 1306.6128 0.61284149 3028 Q9NZ45 CISD1 CDGSH iron-sulfur domain-containing protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 37.945 38.302 4 1.0255E-05 9294 20211116_3436_TMUAki_TMT10x_P_F8 107.99 81.025 1355800 1807300 11508 2421800 3055800 1830900 1372200 1144100 1146600 965480 1724700 1262500 1688700 146610 2418400 2888400 1886200 1472900 1192600 1196800 950300 1645900 3 3 2 3 3 3 3 3 3 3 3 944040 1229000 11508 1654500 2721100 1551400 1028200 756980 760950 656720 1199100 879080 1148400 113880 1656300 2567200 1568900 1123200 806730 801380 645520 1143200 2 2 2 2 2 2 2 2 2 2 2 411810 578220 0 767260 334710 279530 343920 387160 385630 308760 525600 383440 540250 32728 762090 321150 317270 349660 385860 395460 304780 502690 1 1 0 1 1 1 1 1 1 1 1 67527000 47801000 19726000 10027 3028 9317 53395;53396 64625;64626;64627 64626 3 KFPGRPEEEYR Unmodified 1406.6943 0.69426293 2957 Q9NUQ8;Q9NUQ8-2 ABCF3 ATP-binding cassette sub-family F member 3 yes no 0 0 0 2 By MS/MS 5 0 1 1 31.967 31.907 4 8.9767E-05 7435 20211116_3433_TMUAki_TMT10x_P_F5 100.04 87.057 500570 735430 5589.8 851740 1432800 1077500 660760 558780 580270 472400 723960 466120 686670 59767 864080 1354800 1072100 708120 591720 598950 464930 693930 1 1 1 1 1 1 1 1 1 1 1 500570 735430 5589.8 851740 1432800 1077500 660760 558780 580270 472400 723960 466120 686670 59767 864080 1354800 1072100 708120 591720 598950 464930 693930 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38084000 38084000 0 10028 2957 9318 53397 64628 64628 1 KFPGSAALVGAVR Unmodified 1271.735 0.73500553 2660 Q9BTC0;Q9BTC0-1 DIDO1 Death-inducer obliterator 1 yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 48.41 48.575 3 0.00070907 14091 20211116_3433_TMUAki_TMT10x_P_F5 79.652 60.906 2186100 3276300 4390.5 3679900 4231000 5133300 2780300 3105100 2964000 2468100 3191300 2035500 3058600 213970 3747300 4020700 5094200 2901700 3240400 3015400 2436700 3071500 1 1 1 1 1 1 1 1 1 1 1 2186100 3276300 4390.5 3679900 4231000 5133300 2780300 3105100 2964000 2468100 3191300 2035500 3058600 213970 3747300 4020700 5094200 2901700 3240400 3015400 2436700 3071500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 581960000 581960000 0 10029 2660 9319 53398;53399 64629 64629 1 KFSAHYDAVEAELK Unmodified 1606.7991 0.79912193 1705 Q14320 FAM50A Protein FAM50A yes yes 0 0 0 1 By MS/MS 7 0 1 1 46.586 47.077 4 0.0012128 14703 20211116_3446_TMUAki_TMT10x_S_F7 69.729 56.325 1769000 3417700 0 3111700 2192500 1867800 1585400 3060900 3085800 2753900 2854100 1646800 3187900 118410 3177500 2084800 2006300 1686300 3042700 3065400 2702300 2760400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1769000 3417700 0 3111700 2192500 1867800 1585400 3060900 3085800 2753900 2854100 1646800 3187900 118410 3177500 2084800 2006300 1686300 3042700 3065400 2702300 2760400 1 1 0 1 1 1 1 1 1 1 1 208640000 0 208640000 10030 1705 9320 53400 64630 64630 1 KFSNQETCVEIGESVR Unmodified 1881.8891 0.88907593 1279 P60891 PRPS1 Ribose-phosphate pyrophosphokinase 1 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.816 1 1 1 1 2 42.853 43.027 3 2.0407E-35 11919 20211116_3442_TMUAki_TMT10x_S_F4 204.05 187.93 5325700 8479200 3430.6 10326000 3311000 3898800 4151000 5462300 6687600 5743700 7239900 4958600 7918900 396960 10308000 3194800 4403500 4245100 5483200 6712100 5598000 6966900 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5325700 8479200 3430.6 10326000 3311000 3898800 4151000 5462300 6687600 5743700 7239900 4958600 7918900 396960 10308000 3194800 4403500 4245100 5483200 6712100 5598000 6966900 3 3 2 3 3 3 3 3 3 3 3 392250000 0 392250000 10031 1279 9321 53401;53402;53403 64631;64632;64633;64634 64632 4 KFSNQETSVEIGESVR Unmodified 1808.8905 0.89045614 633 P11908;P11908-2 PRPS2 Ribose-phosphate pyrophosphokinase 2 yes no 0 0 0 1 By MS/MS 5 0 1 1 42.174 42.253 3 1.2855E-06 11551 20211116_3433_TMUAki_TMT10x_P_F5 98.169 75.031 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10032 633 9322 53404 64635 64635 1 KFTFGLDWVPK Unmodified 1336.718 0.71795849 1036 P45974;P45974-2;Q92995;Q92995-2 USP5;USP13 Ubiquitin carboxyl-terminal hydrolase 5;Ubiquitin carboxyl-terminal hydrolase 13 yes no 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 74.356 74.319 3 0.0013787 24826 20211116_3442_TMUAki_TMT10x_S_F4 78.964 60.368 8320800 12514000 25944 14033000 8821500 9944800 10583000 4769400 4063500 6008300 8669900 7747400 11683000 682570 14147000 8501800 10267000 10441000 5147500 4582600 5817000 8221000 2 2 1 2 2 2 2 2 2 2 2 4068200 5897600 0 6235200 4492700 6184800 5223900 2360000 1977100 2907700 4058500 3787600 5504400 304750 6336300 4323700 6217900 5160100 2608900 2227300 2817300 3850600 1 1 0 1 1 1 1 1 1 1 1 4252600 6616500 25944 7797500 4328800 3760000 5359500 2409400 2086400 3100600 4611500 3959800 6178300 377820 7811000 4178100 4049100 5281200 2538600 2355300 2999700 4370400 1 1 1 1 1 1 1 1 1 1 1 465680000 234030000 231650000 10033 1036 9323 53405;53406 64636;64637 64637 2 KFTTDDSICVLGISK Unmodified 1682.8549 0.85492225 1487 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 1 By MS/MS 8 0 1 1 63.021 63.202 3 0.00024084 19468 20211116_3436_TMUAki_TMT10x_P_F8 74.12 60.288 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10034 1487 9324 53407 64638 64638 1 KFTTDDSICVLGISKR Unmodified 1838.956 0.95603328 1487 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 2 By MS/MS 2 0 1 1 54.748 54.499 4 2.8712E-07 17441 20211116_3429_TMUAki_TMT10x_P_F2 111.58 96.89 7065100 10970000 83541 12942000 11511000 13473000 8707100 7793500 7052100 6229100 8590400 6578900 10244000 725860 13071000 10971000 13565000 8927400 8163700 7301400 6148200 8239200 1 1 1 1 1 1 1 1 1 1 1 7065100 10970000 83541 12942000 11511000 13473000 8707100 7793500 7052100 6229100 8590400 6578900 10244000 725860 13071000 10971000 13565000 8927400 8163700 7301400 6148200 8239200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 384610000 384610000 0 10035 1487 9325 53408 64639 64639 1 KFVADGIFK Unmodified 1023.5753 0.57531699 783 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 54.825 54.636 3 0.00047662 18036 20211116_3439_TMUAki_TMT10x_S_F1 110.39 72.031 17350000 27784000 194400 26036000 31232000 32934000 19596000 29251000 28646000 22726000 25988000 16155000 25919000 1679600 26788000 29658000 33043000 20766000 29731000 28652000 22464000 25152000 4 4 2 4 4 4 4 4 4 4 4 9940800 15188000 194400 13519000 25369000 25972000 13654000 15457000 16466000 12440000 14800000 9257300 14166000 1221400 14095000 24042000 25455000 14549000 16156000 16569000 12274000 14329000 2 2 2 2 2 2 2 2 2 2 2 7409400 12596000 0 12518000 5863200 6961800 5942200 13794000 12180000 10286000 11188000 6897800 11753000 458170 12692000 5615100 7588400 6216400 13575000 12083000 10190000 10823000 2 2 0 2 2 2 2 2 2 2 2 1676800000 885560000 791210000 10036 783 9326 53409;53410;53411;53412 64640;64641;64642;64643 64642 4 KFVIHPESNNLIIIETDHNAYTEATK Unmodified 2996.5244 0.52435064 1798 Q15393 SF3B3 Splicing factor 3B subunit 3 yes yes 0 0 0 1 By MS/MS By MS/MS 7.17 0.687 1 3 2 2 4 57.621 57.949 4;5 1.3639E-23 16874 20211116_3447_TMUAki_TMT10x_S_F8 148.09 137.79 49510000 88145000 415670 81515000 59767000 84876000 59017000 66837000 63062000 62608000 66883000 46099000 82223000 3903200 83678000 57289000 85854000 60028000 68739000 64114000 61321000 64401000 13 13 4 13 13 13 13 13 13 13 13 26178000 42593000 35027 39397000 30667000 58522000 33568000 32430000 31111000 28945000 31592000 24373000 39732000 1702600 40703000 29467000 57852000 33822000 34185000 31775000 28413000 30460000 5 5 1 5 5 5 5 5 5 5 5 23332000 45551000 380650 42119000 29100000 26354000 25449000 34406000 31951000 33663000 35291000 21726000 42491000 2200600 42975000 27822000 28001000 26206000 34553000 32339000 32908000 33941000 8 8 3 8 8 8 8 8 8 8 8 11860000000 4776000000 7083900000 10037 1798 9327 53413;53414;53415;53416;53417;53418 64644;64645;64646;64647;64648;64649;64650;64651;64652;64653;64654;64655;64656 64656 13 KFVLCPECENPETDLHVNPK Unmodified 2425.1406 0.14061594 1231 P55010 EIF5 Eukaryotic translation initiation factor 5 yes yes 0 0 0 1 By matching By MS/MS 6.67 0.471 1 2 1 2 53.691 54.133 4 0.00010101 15560 20211116_3445_TMUAki_TMT10x_S_F6 67.43 60.997 3850100 6550400 754.14 7502600 3869100 3303400 3169800 5200700 4969700 4739500 5260900 3584700 6115800 301210 7523900 3691100 3666900 3307600 5178200 4987400 4647800 5066000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3850100 6550400 754.14 7502600 3869100 3303400 3169800 5200700 4969700 4739500 5260900 3584700 6115800 301210 7523900 3691100 3666900 3307600 5178200 4987400 4647800 5066000 2 2 1 2 2 2 2 2 2 2 2 1039800000 431930000 607900000 10038 1231 9328 53419;53420;53421 64657;64658 64657 2 KFYEAFSK Unmodified 1018.5124 0.51238239 553 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 1 By MS/MS 2 0 1 1 50.134 49.869 3 0.010659 15599 20211116_3429_TMUAki_TMT10x_P_F2 73.499 45.757 7199000 8550200 0 18227000 20409000 10688000 5985400 4521500 4962600 4346800 7742400 6699700 8014400 372680 17798000 19180000 11215000 6793800 4903200 5192000 4252500 7382700 1 1 0 1 1 1 1 1 1 1 1 7199000 8550200 0 18227000 20409000 10688000 5985400 4521500 4962600 4346800 7742400 6699700 8014400 372680 17798000 19180000 11215000 6793800 4903200 5192000 4252500 7382700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 641830000 641830000 0 10039 553 9329 53422 64659 64659 1 KFYEQFSK Unmodified 1075.5338 0.53384611 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 1 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 46.787 46.671 3 0.0011565 14770 20211116_3439_TMUAki_TMT10x_S_F1 114.4 79.514 4760100 6796400 112180 12024000 9387000 6295600 5018100 3720800 3854700 3035600 6022700 4433000 6361300 564000 11812000 8897600 6709000 5282500 3892500 4049400 2993000 5742700 2 2 2 2 2 2 2 2 2 2 2 2614500 3660300 43676 6270200 7769500 4962600 3139800 2086800 2041200 1582300 3181400 2434700 3425200 329660 6192700 7336000 5071600 3392900 2251700 2165100 1566200 3033700 1 1 1 1 1 1 1 1 1 1 1 2145700 3136100 68504 5754200 1617500 1332900 1878300 1634100 1813600 1453300 2841300 1998300 2936100 234340 5619200 1561700 1637400 1889600 1640800 1884300 1426800 2709100 1 1 1 1 1 1 1 1 1 1 1 275940000 195440000 80503000 10040 544 9330 53423;53424;53425 64660;64661;64662 64662 3 KFYGPEGPYGVFAGR Unmodified 1643.8096 0.80962704 77 O00264 PGRMC1 Membrane-associated progesterone receptor component 1 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 57.617 57.382 3 2.9797E-24 19063 20211116_3430_TMUAki_TMT10x_P_F3 194.77 164.71 88190000 146720000 802230 137950000 115670000 164540000 109770000 109610000 103250000 109180000 119430000 82118000 136870000 8263500 141750000 110790000 164740000 111450000 114200000 105900000 106650000 114710000 12 12 8 12 12 12 12 12 12 12 12 60749000 98782000 725380 92094000 79511000 133590000 79951000 75044000 70577000 75868000 81088000 56568000 92149000 5859800 95044000 76287000 132210000 80785000 79278000 72583000 74063000 77898000 7 7 5 7 7 7 7 7 7 7 7 27441000 47938000 76843 45853000 36155000 30950000 29816000 34564000 32671000 33311000 38346000 25550000 44724000 2403700 46702000 34508000 32530000 30664000 34923000 33314000 32584000 36815000 5 5 3 5 5 5 5 5 5 5 5 8683000000 4875900000 3807100000 10041 77 9331 53426;53427;53428;53429;53430;53431 64663;64664;64665;64666;64667;64668;64669;64670;64671;64672;64673;64674 64668 12 KFYPLEIDYGQDEEAVK Unmodified 2042.9837 0.98368782 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 1 By MS/MS By MS/MS 5.4 1.69 1 2 2 2 2 1 5 5 66.192 66.319 3 3.7814E-15 20201 20211116_3444_TMUAki_TMT10x_S_F5 141.13 127.11 82182000 139800000 424580 132690000 98881000 125480000 95459000 75266000 88934000 93433000 101180000 76519000 130420000 6951400 135760000 94720000 127150000 96805000 79604000 91195000 90503000 97225000 18 18 9 18 18 18 18 18 18 18 18 43666000 74932000 255460 71322000 55472000 89187000 56609000 40413000 48904000 50242000 52988000 40658000 69906000 3899600 73282000 53225000 88659000 57123000 43845000 50233000 48664000 50989000 10 10 5 10 10 10 10 10 10 10 10 38517000 64868000 169120 61368000 43410000 36297000 38850000 34853000 40030000 43191000 48192000 35861000 60516000 3051900 62478000 41495000 38491000 39682000 35759000 40962000 41839000 46237000 8 8 4 8 8 8 8 8 8 8 8 8451800000 3980100000 4471800000 10042 586 9332 53432;53433;53434;53435;53436;53437;53438;53439;53440;53441 64675;64676;64677;64678;64679;64680;64681;64682;64683;64684;64685;64686;64687;64688;64689;64690;64691;64692;64693;64694 64689 20 KFYPLEIDYGQDEEAVKK Unmodified 2171.0787 0.078650837 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 2 By MS/MS By MS/MS 7 0 2 1 1 60.003 60.618 4 5.9287E-13 20185 20211116_3446_TMUAki_TMT10x_S_F7 140.16 125.07 5118900 9067800 110780 7558900 7846400 14282000 6508800 19272000 7614300 13292000 6843200 4767000 8455600 565830 7918400 7496600 14247000 6706300 19164000 7616100 13228000 6625200 2 2 2 2 2 2 2 2 1 2 2 3577000 6133500 71081 4994900 5708100 12026000 5391700 11270000 7614300 7605500 6688600 3331000 5719000 392650 5281200 5469600 11801000 5554400 11387000 7616100 7578900 6480900 1 1 1 1 1 1 1 1 1 1 1 1541900 2934300 39700 2564000 2138300 2256500 1117100 8002300 0 5686900 154540 1436000 2736600 173190 2637200 2027000 2446900 1151900 7776900 0 5649500 144290 1 1 1 1 1 1 1 1 0 1 1 1122700000 660640000 462060000 10043 586 9333 53442;53443 64695;64696 64696 2 KGAAFGFNVIATR Unmodified 1350.7408 0.74081919 1953 Q5VYK3 ECM29 Proteasome-associated protein ECM29 homolog yes yes 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 52.363 52.556 3 1.4103E-11 14561 20211116_3444_TMUAki_TMT10x_S_F5 146.59 124.71 6241300 10076000 90818 11413000 11277000 13295000 7532900 12263000 11227000 10238000 10250000 5811900 9406900 672610 11576000 10724000 13404000 7951100 12459000 11226000 10082000 9918400 2 2 2 2 2 2 2 2 2 2 2 3601900 5895700 46473 6951600 8117800 10607000 5151500 7138700 6613200 5995600 5884900 3354000 5505200 405180 7071900 7712000 10503000 5425800 7399000 6638000 5902700 5699500 1 1 1 1 1 1 1 1 1 1 1 2639400 4180300 44345 4460900 3159000 2687100 2381400 5123900 4614300 4242200 4365500 2457900 3901700 267430 4504500 3012100 2901600 2525300 5060300 4587700 4179400 4218900 1 1 1 1 1 1 1 1 1 1 1 522070000 304610000 217460000 10044 1953 9334 53444;53445 64697;64698 64698 2 KGAAIPAK Unmodified 754.47012 0.47012364 729 P19338 NCL Nucleolin yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 32.34 32.355 3 0.022414 8857 20211116_3439_TMUAki_TMT10x_S_F1 62.582 28.579 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10045 729 9335 53446;53447 64699;64700 64700 2 KGADIMYTGTVDCWR Unmodified 1771.8022 0.80217518 639;638 P12235;P12236 SLC25A4;SLC25A6 ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 0 0 0 1 By MS/MS 7 0 1 1 52.93 53.638 3 0.00071621 16789 20211116_3435_TMUAki_TMT10x_P_F7 75.143 55.304 5286500 8554600 51766 9455600 11593000 18019000 10423000 21089000 10613000 11316000 10658000 4922700 7985700 574850 9710700 11089000 17898000 10639000 20995000 10791000 11454000 10280000 2 2 2 2 2 2 2 2 2 2 2 5286500 8554600 51766 9455600 11593000 18019000 10423000 21089000 10613000 11316000 10658000 4922700 7985700 574850 9710700 11089000 17898000 10639000 20995000 10791000 11454000 10280000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 656410000 656410000 0 10046 638;639 9336 53448 64701;64702 64701 2 KGADIMYTGTVDCWR Oxidation (M) 1787.7971 0.7970898 639;638 P12235;P12236 SLC25A4;SLC25A6 ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 0 0 1 1 By MS/MS 6.5 0.5 1 1 2 47.031 47.192 3 0.0037589 14740 20211116_3446_TMUAki_TMT10x_S_F7 63.682 52.412 1754200 3035700 0 3479300 1231700 1438900 1316300 2405400 2377700 2216700 2527500 1633200 2834300 120970 3487600 1182000 1613400 1363700 2391300 2377800 2172700 2433500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1754200 3035700 0 3479300 1231700 1438900 1316300 2405400 2377700 2216700 2527500 1633200 2834300 120970 3487600 1182000 1613400 1363700 2391300 2377800 2172700 2433500 1 1 0 1 1 1 1 1 1 1 1 400480000 0 400480000 10047 638;639 9336 53449;53450 64703;64704 64704 671 2 KGADSLEDFLYHEGYACTSIHGDR Unmodified 2740.2187 0.21874292 104 O00571;O00571-2;O15523;O15523-2 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 59.303 59.321 5 0.0028575 18722 20211116_3442_TMUAki_TMT10x_S_F4 53.798 39.926 4433400 7049100 34820 7425800 5894400 8633800 5480900 5861200 5641300 5614300 6190400 4128100 6578900 420470 7567000 5643500 8658700 5586100 6091800 5751500 5493400 5954700 2 2 2 2 2 2 2 2 2 2 2 3047100 4761100 12801 5237700 4415200 7302600 4215200 4229600 3814700 3837800 4356800 2837300 4444400 283720 5340500 4229300 7243000 4273700 4443700 3917600 3764300 4186100 1 1 1 1 1 1 1 1 1 1 1 1386200 2288000 22019 2188100 1479100 1331200 1265700 1631600 1826600 1776600 1833600 1290900 2134600 136750 2226500 1414200 1415700 1312400 1648100 1833900 1729100 1768600 1 1 1 1 1 1 1 1 1 1 1 821960000 469400000 352560000 10048 104 9337 53451;53452 64705;64706 64706 2 KGAGSVFR Unmodified 820.45554 0.45553621 1384 P62917 RPL8 60S ribosomal protein L8 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.707 1 2 1 3 1 31.189 31.063 3 0.0049206 7969 20211116_3429_TMUAki_TMT10x_P_F2 76.572 58.236 1107600 2058400 6026.6 1537400 1560500 1708900 1365800 1491900 1578700 1224900 1695600 1031300 1918700 102810 1607700 1491700 1725500 1402200 1519800 1600900 1207300 1632100 2 2 1 2 2 2 2 2 2 2 2 430190 747690 6026.6 633510 819540 1023700 655100 506280 531420 427670 616860 400600 697250 46736 660180 782050 1007200 669260 538510 549080 420920 592420 1 1 1 1 1 1 1 1 1 1 1 677380 1310700 0 903850 740990 685210 710740 985610 1047300 797210 1078800 630700 1221500 56078 947540 709670 718280 732930 981300 1051800 786360 1039700 1 1 0 1 1 1 1 1 1 1 1 81007000 38029000 42979000 10049 1384 9338 53453;53454;53455;53456 64707;64708;64709;64710 64709 4 KGAYDIFLNAK Unmodified 1238.6659 0.66592292 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 57.706 57.469 3 1.6529E-05 18627 20211116_3429_TMUAki_TMT10x_P_F2 105.17 74.62 16680000 26877000 76567 30054000 19289000 21884000 16533000 17616000 17630000 16966000 19255000 15531000 25091000 1445500 30314000 18427000 22702000 16948000 18106000 17946000 16596000 18524000 2 2 1 2 2 2 2 2 2 2 2 8698800 13370000 0 14829000 12123000 14308000 9600700 8620600 9122200 8409200 9287400 8099100 12481000 723940 15017000 11558000 14480000 9855500 9045500 9307100 8221600 8954100 1 1 0 1 1 1 1 1 1 1 1 7981000 13507000 76567 15225000 7165000 7575800 6932500 8995100 8508200 8556400 9967800 7431700 12610000 721610 15296000 6869000 8221400 7092900 9060800 8638500 8374700 9570400 1 1 1 1 1 1 1 1 1 1 1 1435200000 861090000 574130000 10050 1018 9339 53457;53458 64711;64712 64711 2 KGCTGVITLNRPK Unmodified 1442.8028 0.80276752 1984 Q6NVY1;Q6NVY1-2 HIBCH 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial yes no 0 0 0 2 By matching By MS/MS 5 0 2 1 1 34.35 34.414 4 0.1086 7249 20211116_3444_TMUAki_TMT10x_S_F5 38.399 19.005 276100 490870 6103.9 494770 302560 240130 328350 245380 269620 236340 428180 257120 458040 28950 500660 291130 260450 329890 248950 282490 231190 408140 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 276100 490870 6103.9 494770 302560 240130 328350 245380 269620 236340 428180 257120 458040 28950 500660 291130 260450 329890 248950 282490 231190 408140 1 1 1 1 1 1 1 1 1 1 1 69879000 56532000 13347000 10051 1984 9340 53459;53460 64713 64713 1 KGCVITISGR Unmodified 1089.5965 0.59646314 64 O00154-4;O00154;O00154-6;O00154-7;O00154-5 ACOT7 Cytosolic acyl coenzyme A thioester hydrolase yes no 0 0 0 1 By MS/MS By MS/MS 1.6 0.8 3 1 1 2 3 35.131 34.976 3 1.505E-05 9499 20211116_3429_TMUAki_TMT10x_P_F2 136.96 108.56 11119000 16555000 32925 16597000 14277000 13824000 11676000 8596400 7111500 9292600 11698000 10353000 15448000 949530 16887000 13623000 14137000 11838000 9025000 7597300 9046900 11143000 5 5 3 5 5 5 5 5 5 5 5 7075800 10183000 6356.8 10326000 9484200 10234000 6863900 5442300 4730500 5827600 7077800 6588000 9502500 591820 10523000 9026200 10323000 7033300 5786700 4989100 5675600 6755100 3 3 2 3 3 3 3 3 3 3 3 4043400 6372100 26568 6270700 4792600 3590700 4812300 3154100 2381100 3465000 4620500 3764900 5945500 357710 6364200 4596600 3813500 4805000 3238200 2608200 3371300 4387900 2 2 1 2 2 2 2 2 2 2 2 729530000 395410000 334120000 10052 64 9341 53461;53462;53463;53464;53465 64714;64715;64716;64717;64718;64719;64720 64716 7 KGDECELLGHSK Unmodified 1371.6453 0.64526383 1097 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 34.175 34.227 4 1.6797E-05 7038 20211116_3444_TMUAki_TMT10x_S_F5 101.32 80.939 1067500 1741900 11186 1837600 1730600 1362100 1021200 792390 921560 731110 1145800 993990 1625700 108210 1860800 1642200 1404200 1069900 832570 949840 716570 1098400 2 2 2 2 2 2 2 2 2 2 2 775490 1243500 3525 1343100 1418600 1106400 701140 585350 715070 548840 808240 722090 1160700 76586 1359600 1342400 1130000 749150 620340 730160 537530 776790 1 1 1 1 1 1 1 1 1 1 1 291960 498390 7660.5 494510 311990 255790 320060 207050 206480 182280 337550 271900 465030 31625 501190 299810 274210 320720 212230 219680 179040 321570 1 1 1 1 1 1 1 1 1 1 1 139010000 111480000 27538000 10053 1097 9342 53466;53467;53468 64721;64722 64722 2 KGDIFLVR Unmodified 946.56 0.56000128 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 1 By MS/MS By MS/MS 4.78 2.97 2 2 3 2 4 5 46.226 46.228 3 0.0025283 12407 20211116_3428_TMUAki_TMT10x_P_F1 98.044 53.695 30316000 45330000 7455.9 51778000 54607000 52755000 29648000 40850000 41312000 36853000 42892000 28225000 42322000 2595600 52381000 51715000 53415000 31740000 42015000 41574000 36157000 41328000 7 7 1 7 7 7 7 7 7 7 7 17750000 26136000 0 28953000 41438000 40377000 16534000 23313000 23986000 21469000 24522000 16526000 24399000 1622700 29508000 39095000 40045000 18304000 24509000 24095000 21044000 23639000 4 4 0 4 4 4 4 4 4 4 4 12565000 19194000 7455.9 22825000 13169000 12378000 13114000 17537000 17326000 15384000 18370000 11699000 17924000 972900 22873000 12620000 13370000 13436000 17505000 17479000 15113000 17689000 3 3 1 3 3 3 3 3 3 3 3 3957400000 2685400000 1272000000 10054 1235 9343 53469;53470;53471;53472;53473;53474;53475;53476;53477 64723;64724;64725;64726;64727;64728;64729;64730;64731 64723 9 KGDIIQLQR Unmodified 1069.6244 0.62439245 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 37.886 38.27 3 0.0026834 10593 20211116_3435_TMUAki_TMT10x_P_F7 79.07 24.348 1993400 2912800 66846 3076000 3812200 3577400 2388000 2536600 2649100 2235700 2866900 1856600 2718500 252180 3134000 3623500 3590100 2504800 2622600 2691300 2195900 2758900 4 4 3 4 4 4 4 4 4 4 4 1339700 1852800 39806 2049700 3192300 2902100 1682800 1674500 1749200 1545100 1921900 1247700 1729600 173250 2089900 3025400 2876300 1787900 1760600 1782700 1514400 1848700 3 3 2 3 3 3 3 3 3 3 3 653740 1060000 27040 1026300 619830 675230 705250 862130 899890 690590 945010 608900 988950 78925 1044100 598110 713730 716920 861990 908570 681540 910220 1 1 1 1 1 1 1 1 1 1 1 107250000 71959000 35293000 10055 542 9344 53478;53479;53480 64732;64733;64734;64735 64733 4 KGDILTLLNSTNK Unmodified 1415.7984 0.79839365 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 65.665 65.207 3 2.4392E-08 20538 20211116_3440_TMUAki_TMT10x_S_F2 107.98 75.478 7782200 13603000 188270 16410000 7664100 6521200 6627400 8387800 8860800 8728600 10241000 7247400 12703000 819010 16395000 7334100 7295300 6845800 8444200 8965600 8510800 9836600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7782200 13603000 188270 16410000 7664100 6521200 6627400 8387800 8860800 8728600 10241000 7247400 12703000 819010 16395000 7334100 7295300 6845800 8444200 8965600 8510800 9836600 2 2 2 2 2 2 2 2 2 2 2 398580000 0 398580000 10056 1663 9345 53481;53482 64736;64737;64738 64736 3 KGDIVDIK Unmodified 886.51238 0.51238239 1052 P46778 RPL21 60S ribosomal protein L21 yes yes 0 0 0 1 By MS/MS By MS/MS 5.5 0.957 1 2 2 1 3 3 41.868 41.965 3 0.0040811 10267 20211116_3444_TMUAki_TMT10x_S_F5 90.108 22.545 13877000 21909000 118390 21619000 18391000 18852000 15247000 11823000 12956000 11617000 16122000 12921000 20443000 1265900 22034000 17558000 19218000 15559000 12369000 13393000 11354000 15454000 5 5 4 5 5 5 5 5 5 5 5 8671400 13340000 35358 13152000 13078000 14302000 9569300 7212900 8084300 7219700 9911400 8073700 12447000 755430 13447000 12450000 14340000 9844000 7691600 8354200 7050900 9504600 3 3 2 3 3 3 3 3 3 3 3 5205400 8569300 83037 8467300 5312800 4549300 5677300 4609600 4871800 4396800 6210200 4847300 7995700 510450 8586600 5108400 4877500 5714800 4677300 5039000 4302900 5949300 2 2 2 2 2 2 2 2 2 2 2 857360000 583840000 273520000 10057 1052 9346 53483;53484;53485;53486;53487;53488 64739;64740;64741;64742;64743;64744 64742 6 KGDLLLNR Unmodified 927.55016 0.55016488 1750 Q15008;Q15008-4;Q15008-3;Q15008-2 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 0 0 0 1 By MS/MS 8 0 1 1 36.888 37.175 3 0.077551 8892 20211116_3436_TMUAki_TMT10x_P_F8 45.161 19.056 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10058 1750 9347 53489 64745 64745 1 KGDVAAAHTCFSGALTHCR Unmodified 2057.9524 0.95236166 2178 Q8N0Z6 TTC5 Tetratricopeptide repeat protein 5 yes yes 0 0 0 1 By MS/MS By matching 1 0 2 1 1 34.272 34.267 5 6.6108E-05 7697 20211116_3428_TMUAki_TMT10x_P_F1 75.912 71.444 329670 517610 0 558500 685940 593630 382340 269510 273690 255770 442380 306890 483140 25129 567400 649610 595300 400330 289970 289170 250370 421530 1 1 0 1 1 1 1 1 1 1 1 329670 517610 0 558500 685940 593630 382340 269510 273690 255770 442380 306890 483140 25129 567400 649610 595300 400330 289970 289170 250370 421530 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34517000 26149000 8367500 10059 2178 9348 53490;53491 64746 64746 1 KGDVEGSQSQDEGEGSGESERGSGSQSSVPSVDQFTGVGIR Unmodified 4111.8439 0.84385947 3219 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 2 By MS/MS 4 0 1 1 48.699 48.853 5 0.00031542 14312 20211116_3442_TMUAki_TMT10x_S_F4 53.942 52.093 612910 1175900 5216.2 1101400 594330 478630 363290 970130 871150 782840 876740 570720 1097000 55416 1119600 564380 537060 396300 955950 864220 772280 845590 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 612910 1175900 5216.2 1101400 594330 478630 363290 970130 871150 782840 876740 570720 1097000 55416 1119600 564380 537060 396300 955950 864220 772280 845590 1 1 1 1 1 1 1 1 1 1 1 825910000 0 825910000 10060 3219 9349 53492 64747 64747 1 KGDVVHCWYTGTLQDGTVFDTNIQTSAK Unmodified 3140.4873 0.48731321 1472 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 0 0 0 1 By MS/MS By MS/MS 6 2.92 1 1 2 3 1 65.559 65.737 4 1.5228E-33 20446 20211116_3428_TMUAki_TMT10x_P_F1 172.66 155.72 16213000 25778000 396020 27185000 19283000 20384000 21311000 8184200 7458300 11824000 17168000 15098000 24059000 1648500 27532000 18558000 20911000 21082000 9045800 8538300 11398000 16261000 6 6 3 6 6 6 6 6 6 6 6 8493500 13882000 90698 14756000 9644500 13590000 11253000 4803300 4509000 6203100 9022600 7908300 12956000 722110 14974000 9288100 13719000 11122000 5369000 5042500 6000600 8564000 4 4 2 4 4 4 4 4 4 4 4 7719300 11897000 305320 12429000 9638800 6794100 10058000 3381000 2949200 5620900 8145600 7189500 11103000 926360 12558000 9269500 7192200 9960100 3676800 3495800 5397400 7696900 2 2 1 2 2 2 2 2 2 2 2 6805100000 4950700000 1854400000 10061 1472 9350 53493;53494;53495;53496 64748;64749;64750;64751;64752;64753 64748 6 KGDVVIVLTGWRPGSGFTNTMR Unmodified 2390.2529 0.252884 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 2 By MS/MS 7 0 1 1 66.95 67.521 4 1.317E-07 22503 20211116_3435_TMUAki_TMT10x_P_F7 98.019 82.435 11449000 17348000 136230 16422000 11510000 18825000 15622000 8125900 6225500 8489500 12694000 10660000 16184000 956920 16854000 11140000 18789000 15340000 8812700 6974000 8276300 12045000 2 2 1 2 2 2 2 2 2 2 2 11449000 17348000 136230 16422000 11510000 18825000 15622000 8125900 6225500 8489500 12694000 10660000 16184000 956920 16854000 11140000 18789000 15340000 8812700 6974000 8276300 12045000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1326600000 1326600000 0 10062 670;671 9351 53497 64754;64755 64754 2 KGDVVIVLTGWRPGSGFTNTMR Oxidation (M) 2406.2478 0.24779863 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 1 2 By MS/MS 6 0 1 1 64.132 64.099 4 8.565E-05 19610 20211116_3445_TMUAki_TMT10x_S_F6 64.488 43.09 5452100 9407200 83724 8580800 5817700 5200900 5817200 4423400 3938600 4836000 6196100 5077100 8774900 535160 8761600 5583300 5489300 5842500 4549000 4169100 4706100 5907200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5452100 9407200 83724 8580800 5817700 5200900 5817200 4423400 3938600 4836000 6196100 5077100 8774900 535160 8761600 5583300 5489300 5842500 4549000 4169100 4706100 5907200 1 1 1 1 1 1 1 1 1 1 1 1349200000 0 1349200000 10063 670;671 9351 53498 64756 64756 737 1 KGDYIEAESSYSR Unmodified 1503.6842 0.68415175 2589 Q99614 TTC1 Tetratricopeptide repeat protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.25 0.829 1 1 2 2 2 36.581 36.561 3 7.0798E-15 11658 20211116_3441_TMUAki_TMT10x_S_F3 172.82 149.9 3343900 5021900 6615.8 5827700 6167900 5145200 3558100 3047900 3439100 2814900 4232900 3113500 4688900 319400 5878000 5848600 5236500 3741900 3197800 3532100 2758800 4058700 4 4 2 4 4 4 4 4 4 4 4 2519500 3733700 6039.4 4309800 5327200 4530500 2699000 2303500 2536900 2090100 3101000 2345900 3486100 252250 4359300 5042200 4551700 2870100 2448100 2607900 2050100 2974000 2 2 1 2 2 2 2 2 2 2 2 824400 1288200 576.44 1517800 840690 614700 859050 744360 902250 724830 1131900 767590 1202900 67154 1518700 806460 684840 871750 749690 924140 708710 1084800 2 2 1 2 2 2 2 2 2 2 2 267300000 192020000 75284000 10064 2589 9352 53499;53500;53501;53502 64757;64758;64759;64760 64759 4 KGEDFVK Unmodified 821.42832 0.42831841 989 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 34.952 35.021 3 0.032283 8794 20211116_3433_TMUAki_TMT10x_P_F5 65.305 24.873 3540300 6322100 57888 5264300 4632500 5097000 4293200 3155600 3439000 3310300 4397100 3296800 5895200 362760 5442600 4436800 5159100 4346000 3311000 3570000 3226700 4212000 2 2 2 2 2 2 2 2 2 2 2 2030300 3597200 38468 2964500 2792300 3616700 2298100 1826300 2012900 1968300 2530400 1890700 3354200 214850 3078700 2667300 3604000 2348100 1951500 2078700 1916500 2424900 1 1 1 1 1 1 1 1 1 1 1 1509900 2724900 19420 2299800 1840200 1480200 1995100 1329300 1426100 1342100 1866700 1406000 2541000 147910 2363900 1769500 1555100 1998000 1359600 1491300 1310200 1787100 1 1 1 1 1 1 1 1 1 1 1 150300000 101560000 48740000 10065 989 9353 53503;53504 64761;64762 64761 2 KGEGYSNPNEGATVEIHLEGR Unmodified 2256.0771 0.077087707 1635 Q13451;Q13451-2 FKBP5 Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.957 1 2 2 1 2 4 39.602 39.64 4 2.1754E-55 10200 20211116_3431_TMUAki_TMT10x_P_F4 226.71 211.79 3705100 6387500 79666 6723300 5399800 5355700 4338400 6798100 6606100 5922200 6160900 3450300 5961500 323670 6814700 5155100 5572800 4526400 6812800 6605600 5820000 5957000 7 7 3 7 7 7 7 7 7 7 7 693110 1169400 0 1049900 1537700 1937600 1033000 1227200 1305700 1135800 1123600 645310 1090700 63376 1092800 1461400 1903200 1082700 1280900 1310000 1113000 1089500 2 2 0 2 2 2 2 2 2 2 2 3012000 5218200 79666 5673400 3862000 3418100 3305400 5570800 5300400 4786400 5037300 2805000 4870800 260300 5721900 3693700 3669600 3443700 5531900 5295600 4707000 4867500 5 5 3 5 5 5 5 5 5 5 5 1659100000 853070000 806060000 10066 1635 9354 53505;53506;53507;53508;53509;53510 64763;64764;64765;64766;64767;64768;64769 64764 7 KGEICHLLCKPEYAYGSAGSLPK Unmodified 2577.272 0.27196447 1635 Q13451;Q13451-2 FKBP5 Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed yes no 0 0 0 2 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 55.898 55.615 5 3.1467E-07 16608 20211116_3440_TMUAki_TMT10x_S_F2 88.222 80.418 47942000 87859000 926680 93970000 61763000 78615000 56110000 64776000 48829000 60017000 71380000 44644000 82005000 4827000 95204000 59122000 80724000 56985000 66416000 50794000 58812000 68160000 5 5 3 5 5 5 5 5 5 5 5 23095000 43311000 610150 45229000 35433000 55583000 32889000 31097000 22179000 28723000 35820000 21509000 40421000 2656200 46161000 33947000 55435000 33162000 32782000 23516000 28150000 34132000 2 2 2 2 2 2 2 2 2 2 2 24846000 44548000 316530 48741000 26330000 23032000 23221000 33679000 26650000 31294000 35561000 23135000 41584000 2170800 49043000 25174000 25289000 23822000 33634000 27278000 30662000 34028000 3 3 1 3 3 3 3 3 3 3 3 2745300000 1270600000 1474800000 10067 1635 9355 53511;53512;53513 64770;64771;64772;64773;64774 64773 5 KGEIFELK Unmodified 962.54368 0.54368251 1391;1557 P63010;P63010-2;Q10567;Q10567-3;Q10567-2;Q10567-4 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 no no 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 50.04 50.416 3 0.0109 15505 20211116_3435_TMUAki_TMT10x_P_F7 73.067 23.699 5241700 7868800 54416 9492500 14005000 12148000 6569300 7388400 7376800 6285200 7886100 4880900 7348500 602870 9609000 13245000 12105000 7077400 7719200 7487300 6183900 7591600 2 2 1 2 2 2 2 2 2 2 2 5241700 7868800 54416 9492500 14005000 12148000 6569300 7388400 7376800 6285200 7886100 4880900 7348500 602870 9609000 13245000 12105000 7077400 7719200 7487300 6183900 7591600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 359690000 359690000 0 10068 1391;1557 9356 53514;53515 64775;64776 64776 2 KGEITGEVR Unmodified 987.53491 0.53490874 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 1 By MS/MS 4 0 1 1 31.101 31.135 3 0.062266 6826 20211116_3431_TMUAki_TMT10x_P_F4 43.604 13.795 1000400 1588000 4625.3 1372900 1357200 1578800 1107700 785820 826330 794990 1201300 931500 1481000 92248 1418800 1295300 1577800 1127900 839260 866270 776050 1147300 1 1 1 1 1 1 1 1 1 1 1 1000400 1588000 4625.3 1372900 1357200 1578800 1107700 785820 826330 794990 1201300 931500 1481000 92248 1418800 1295300 1577800 1127900 839260 866270 776050 1147300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 45424000 45424000 0 10069 755 9357 53516 64777 64777 1 KGEKDIPGLTDTTVPR Unmodified 1725.9261 0.92611336 1365 P62753 RPS6 40S ribosomal protein S6 yes yes 0 0 0 2 By MS/MS 7 0 1 1 42.656 43.118 4 4.5335E-07 12637 20211116_3435_TMUAki_TMT10x_P_F7 105.77 86.196 2243700 3621900 75342 3779800 7921800 9514200 4585500 7135000 5794600 4278700 4685600 2089700 3380200 335760 3930600 7516500 9285200 4863200 7288900 5802800 4296500 4554400 2 2 2 2 2 2 2 2 2 2 2 2243700 3621900 75342 3779800 7921800 9514200 4585500 7135000 5794600 4278700 4685600 2089700 3380200 335760 3930600 7516500 9285200 4863200 7288900 5802800 4296500 4554400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 138370000 138370000 0 10070 1365 9358 53517 64778;64779 64779 2 KGEPVSAEDLGVSGALTVLMK Oxidation (M) 2116.1086 0.10857076 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 1 1 By MS/MS By MS/MS 6.91 0.793 4 4 3 5 6 70.427 70.552 3;4 3.6455E-19 24208 20211116_3446_TMUAki_TMT10x_S_F7 141.1 122.06 51954000 91147000 795570 79449000 62311000 101040000 65424000 78402000 73351000 72849000 72975000 48378000 85007000 4954200 82200000 59858000 101090000 66445000 80690000 74262000 71377000 70408000 16 16 11 16 16 16 16 16 16 16 16 34151000 56234000 415480 50643000 36205000 76944000 42610000 48662000 46337000 45253000 45608000 31799000 52452000 3043700 52452000 34888000 76127000 43002000 50801000 46951000 44337000 44019000 9 9 5 9 9 9 9 9 9 9 9 17803000 34913000 380080 28806000 26106000 24095000 22814000 29740000 27013000 27597000 27367000 16579000 32555000 1910500 29748000 24970000 24964000 23443000 29888000 27310000 27041000 26389000 7 7 6 7 7 7 7 7 7 7 7 10536000000 5468700000 5067800000 10071 629 9359 53518;53519;53520;53521;53522;53523;53524;53525;53526;53527;53528 64780;64781;64782;64783;64784;64785;64786;64787;64788;64789;64790;64791;64792;64793;64794;64795;64796;64797 64795 652 18 KGEPVSAEDLGVSGALTVLMK Unmodified 2100.1137 0.11365613 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 1 By MS/MS 7 0 1 1 76.987 77.068 3 3.3666E-05 27077 20211116_3446_TMUAki_TMT10x_S_F7 77.681 66.736 2256300 4081700 0 3662400 3563100 2399000 2723500 2047300 1608300 2153000 2972100 2100800 3807100 192920 3747000 3394600 2513900 2771900 2102500 1733400 2098400 2824800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2256300 4081700 0 3662400 3563100 2399000 2723500 2047300 1608300 2153000 2972100 2100800 3807100 192920 3747000 3394600 2513900 2771900 2102500 1733400 2098400 2824800 1 1 0 1 1 1 1 1 1 1 1 834440000 0 834440000 10072 629 9359 53529 64798 64798 1 KGESGQSWPR Unmodified 1130.5469 0.54687041 1778 Q15185;Q15185-3;Q15185-4 PTGES3 Prostaglandin E synthase 3 yes no 0 0 0 1 By MS/MS 5 0 1 1 30.674 30.61 3 0.00066856 6940 20211116_3433_TMUAki_TMT10x_P_F5 93.623 75.291 429810 663060 10619 633450 703620 637920 569480 231910 244970 264560 505060 400280 618600 49366 648380 671940 640470 574610 257250 272640 257040 479160 1 1 1 1 1 1 1 1 1 1 1 429810 663060 10619 633450 703620 637920 569480 231910 244970 264560 505060 400280 618600 49366 648380 671940 640470 574610 257250 272640 257040 479160 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39877000 39877000 0 10073 1778 9360 53530 64799 64799 1 KGESQTDIEITR Unmodified 1375.6943 0.69432251 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 33.07 33.093 3 3.7448E-08 7625 20211116_3431_TMUAki_TMT10x_P_F4 139.64 117.82 1569900 2336600 1664.8 2544700 2226300 2664400 1737000 1213700 1441900 1320300 1726900 1461500 2181000 112020 2583100 2120600 2674400 1778400 1310400 1489900 1285000 1657100 3 3 1 3 3 3 3 3 3 3 3 1488200 2221200 1664.8 2416800 2169800 2599900 1666900 1158200 1380300 1275300 1646400 1385400 2073300 108320 2454400 2066300 2604900 1708300 1253900 1426200 1240700 1580000 2 2 1 2 2 2 2 2 2 2 2 81699 115370 0 127970 56557 64558 70111 55449 61541 44986 80560 76048 107700 3700.5 128710 54393 69474 70143 56523 63657 44366 77125 1 1 0 1 1 1 1 1 1 1 1 89121000 83076000 6045500 10074 1094 9361 53531;53532;53533;53534 64800;64801;64802;64803 64801 4 KGESQTDIEITREEDFTR Unmodified 2153.0237 0.023655153 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 2 By MS/MS By MS/MS 2.96 1.15 4 4 7 9 1 11 14 35.42 35.407 3;4 3.4796E-80 12847 20211116_3441_TMUAki_TMT10x_S_F3 314.45 283.96 110240000 178770000 999290 199820000 190780000 208540000 125330000 162090000 155120000 140030000 158760000 102640000 166890000 10108000 202490000 181300000 210860000 131480000 166480000 156630000 137670000 153030000 37 37 20 37 37 37 37 37 37 37 37 79762000 125210000 519740 139710000 158990000 182160000 100100000 110450000 106380000 97730000 110770000 74265000 116880000 7491300 142140000 150950000 181340000 104810000 115540000 108110000 95973000 106720000 15 15 8 15 15 15 15 15 15 15 15 30475000 53568000 479550 60109000 31793000 26381000 25236000 51633000 48734000 42298000 47984000 28378000 50009000 2617200 60355000 30344000 29523000 26668000 50943000 48524000 41695000 46312000 22 22 12 22 22 22 22 22 22 22 22 43291000000 29535000000 13755000000 10075 1094 9362 53535;53536;53537;53538;53539;53540;53541;53542;53543;53544;53545;53546;53547;53548;53549;53550;53551;53552;53553;53554;53555;53556;53557;53558;53559 64804;64805;64806;64807;64808;64809;64810;64811;64812;64813;64814;64815;64816;64817;64818;64819;64820;64821;64822;64823;64824;64825;64826;64827;64828;64829;64830;64831;64832;64833;64834;64835;64836;64837;64838;64839;64840;64841 64826 38 KGFDQEEVFEKPTR Unmodified 1708.842 0.84204938 881 P30876 POLR2B DNA-directed RNA polymerase II subunit RPB2 yes yes 0 0 0 2 By MS/MS 7 0 1 1 43.138 43.686 4 0.10638 13259 20211116_3446_TMUAki_TMT10x_S_F7 37.85 23.54 1010500 1491300 0 1997300 833510 727470 770940 1470500 1439300 1261600 1428100 940820 1393400 69335 1982900 796860 836120 805960 1451400 1434600 1240700 1378000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1010500 1491300 0 1997300 833510 727470 770940 1470500 1439300 1261600 1428100 940820 1393400 69335 1982900 796860 836120 805960 1451400 1434600 1240700 1378000 1 1 0 1 1 1 1 1 1 1 1 38315000 0 38315000 10076 881 9363 53560 64842 64842 1 KGFIGPGIDVPAPDMSTGER Unmodified 2043.0095 0.0095254139 463 P00367;P00367-3;P00367-2 GLUD1 Glutamate dehydrogenase 1, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 59.312 59.827 3 9.4666E-09 19841 20211116_3446_TMUAki_TMT10x_S_F7 103.4 98.853 5442500 9596600 23129 9669600 6395600 4584400 5267200 4316800 3809000 4712400 6830800 5067700 8954900 486120 9783400 6105400 4977900 5356600 4414400 4046100 4586100 6495900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5442500 9596600 23129 9669600 6395600 4584400 5267200 4316800 3809000 4712400 6830800 5067700 8954900 486120 9783400 6105400 4977900 5356600 4414400 4046100 4586100 6495900 2 2 2 2 2 2 2 2 2 2 2 628750000 0 628750000 10077 463 9364 53561;53562 64843;64844;64845 64845 3 KGFIGPGIDVPAPDMSTGER Oxidation (M) 2059.0044 0.004440036 463 P00367;P00367-3;P00367-2 GLUD1 Glutamate dehydrogenase 1, mitochondrial yes no 0 0 1 1 By MS/MS 6.5 0.5 1 1 2 53.623 53.932 3 0.00082113 15398 20211116_3445_TMUAki_TMT10x_S_F6 61.767 57.546 10427000 17827000 203670 17593000 9815500 10419000 8362600 17528000 18033000 16386000 15992000 9709500 16634000 977640 17857000 9383000 11217000 8857900 17429000 17850000 16051000 15490000 5 5 4 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10427000 17827000 203670 17593000 9815500 10419000 8362600 17528000 18033000 16386000 15992000 9709500 16634000 977640 17857000 9383000 11217000 8857900 17429000 17850000 16051000 15490000 5 5 4 5 5 5 5 5 5 5 5 1237500000 0 1237500000 10078 463 9364 53563;53564 64846;64847;64848;64849;64850 64846 346 5 KGFSEGLWEIENNPTVK Unmodified 1946.9738 0.97379183 1165 P51858;P51858-3;P51858-2 HDGF Hepatoma-derived growth factor yes no 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 64.066 64.053 3 8.2591E-05 19206 20211116_3434_TMUAki_TMT10x_P_F6 80.07 55.017 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10079 1165 9365 53565;53566 64851;64852 64851 2 KGGDGIKPPPIIGR Unmodified 1403.8249 0.82488317 2947 Q9NTK5;Q9NTK5-3 OLA1 Obg-like ATPase 1 yes no 0 0 0 2 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 39.77 39.65 4 0.00010601 12961 20211116_3441_TMUAki_TMT10x_S_F3 95.57 84.74 8557100 12934000 141190 15706000 27961000 19000000 11678000 12399000 14045000 10450000 13570000 7968500 12079000 1111800 15876000 26410000 19005000 12770000 12881000 14168000 10287000 13105000 6 6 5 6 6 6 6 6 6 6 6 6272900 9324100 85209 11418000 25711000 17028000 9392700 9048700 10560000 7614000 9922400 5841300 8708200 871720 11584000 24248000 16821000 10417000 9559900 10670000 7495400 9591500 2 2 2 2 2 2 2 2 2 2 2 2284200 3610100 55979 4288200 2250200 1972400 2284800 3349900 3484900 2836300 3647700 2127200 3371100 240070 4292200 2161800 2183200 2352900 3321100 3498500 2791300 3513700 4 4 3 4 4 4 4 4 4 4 4 899660000 687960000 211700000 10080 2947 9366 53567;53568;53569;53570;53571 64853;64854;64855;64856;64857;64858 64858 6 KGHAVGDIPGVR Unmodified 1204.6677 0.66765425 1344 P62266 RPS23 40S ribosomal protein S23 yes yes 0 0 0 1 By MS/MS 5 0 1 1 31.52 31.456 4 0.071374 7291 20211116_3433_TMUAki_TMT10x_P_F5 36 16.729 263660 427640 0 433030 592020 587330 369370 295600 317160 298730 393190 245490 399050 25914 443690 562020 582260 384690 315360 327640 291620 376940 1 1 0 1 1 1 1 1 1 1 1 263660 427640 0 433030 592020 587330 369370 295600 317160 298730 393190 245490 399050 25914 443690 562020 582260 384690 315360 327640 291620 376940 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19830000 19830000 0 10081 1344 9367 53572 64859 64859 1 KGHQFSCVCLHGDR Unmodified 1699.7671 0.76712707 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 4 2 2 29.95 29.983 4;5 2.3008E-09 7936 20211116_3439_TMUAki_TMT10x_S_F1 128.9 117.63 1267700 2076400 333550 2620500 2036200 3287800 2468500 3645500 2913800 3347900 3253000 1182800 1939500 424040 2644900 1983300 3316300 2495100 3679500 2956800 3282000 3127500 4 4 3 4 4 4 4 4 4 4 4 586940 959560 151880 1164200 1270000 2067300 1409900 1752600 1059400 1540800 1423100 547610 896130 197100 1186800 1230200 2043300 1411900 1791400 1106000 1513600 1361500 2 2 1 2 2 2 2 2 2 2 2 680720 1116800 181670 1456300 766190 1220500 1058700 1892900 1854400 1807100 1829900 635170 1043400 226950 1458100 753010 1273000 1083200 1888100 1850900 1768400 1766000 2 2 2 2 2 2 2 2 2 2 2 67303000 31229000 36074000 10082 2334 9368 53573;53574;53575;53576 64860;64861;64862;64863 64863 4 KGIDYDFPSLILQK Unmodified 1635.8872 0.88720866 2730 Q9BYG3 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes yes 0 0 0 1 By MS/MS By MS/MS 2.8 2.64 2 2 1 3 2 74.108 74.051 3 9.9852E-14 23739 20211116_3428_TMUAki_TMT10x_P_F1 143.38 102.8 26790000 43253000 89068 39321000 30536000 42456000 31616000 28247000 28259000 29028000 33168000 24944000 40345000 2179100 40439000 29300000 42738000 31909000 29460000 29070000 28318000 31844000 7 7 3 7 7 7 7 7 7 7 7 16439000 26752000 12299 23920000 16706000 31173000 19484000 17173000 16912000 17502000 19976000 15306000 24952000 1328200 24710000 16086000 30995000 19539000 18176000 17426000 17080000 19175000 4 4 2 4 4 4 4 4 4 4 4 10351000 16501000 76769 15402000 13829000 11283000 12132000 11074000 11347000 11525000 13193000 9637500 15393000 850890 15728000 13214000 11744000 12371000 11284000 11643000 11238000 12669000 3 3 1 3 3 3 3 3 3 3 3 4039500000 2562500000 1477100000 10083 2730 9369 53577;53578;53579;53580;53581 64864;64865;64866;64867;64868;64869;64870 64864 7 KGISLNPEQWSQLK Unmodified 1626.873 0.87295558 1215 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes yes 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 63.14 62.817 3 4.2557E-09 20833 20211116_3429_TMUAki_TMT10x_P_F2 124.62 105.79 26661000 46880000 289970 43988000 43780000 56763000 43984000 59694000 68165000 54731000 43533000 24822000 43734000 2250800 45271000 41971000 57104000 45353000 60396000 67414000 53658000 42757000 4 4 1 4 4 4 4 4 4 4 4 14537000 25697000 289970 24621000 29565000 45851000 30168000 29844000 33798000 29256000 23178000 13536000 23974000 1594100 25511000 28375000 45041000 30681000 31133000 33848000 28597000 22688000 2 2 1 2 2 2 2 2 2 2 2 12124000 21183000 0 19367000 14216000 10912000 13817000 29851000 34367000 25475000 20355000 11286000 19759000 656680 19760000 13596000 12063000 14672000 29263000 33566000 25061000 20069000 2 2 0 2 2 2 2 2 2 2 2 2248100000 1085500000 1162600000 10084 1215 9370 53582;53583;53584 64871;64872;64873;64874 64872 4 KGIVDQSQQAYQEAFEISK Unmodified 2168.075 0.074962442 1395 P63104;P63104-2 YWHAZ 14-3-3 protein zeta/delta yes no 0 0 0 1 By MS/MS 7 0 1 1 62.152 62.847 3 1.7682E-07 20532 20211116_3435_TMUAki_TMT10x_P_F7 100.41 85.32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10085 1395 9371 53585 64875 64875 1 KGIVDQSQQAYQEAFEISKK Unmodified 2296.1699 0.16992546 1395 P63104;P63104-2 YWHAZ 14-3-3 protein zeta/delta yes no 0 0 0 2 By MS/MS By MS/MS 7.4 0.49 3 2 2 3 59.734 60.119 4 1.9718E-41 18159 20211116_3436_TMUAki_TMT10x_P_F8 209.9 196.97 62768000 89339000 364740 104110000 66205000 69206000 56026000 45663000 48109000 44972000 61130000 58445000 83418000 5506600 104640000 63241000 72126000 57117000 47594000 49751000 43950000 58567000 6 6 5 6 6 6 6 6 6 6 6 38323000 54884000 342960 64616000 41501000 53066000 34068000 26519000 29358000 29553000 38364000 35685000 51249000 3541400 65059000 39627000 54176000 34800000 28393000 30392000 28738000 36730000 3 3 3 3 3 3 3 3 3 3 3 24445000 34455000 21777 39490000 24704000 16140000 21958000 19144000 18751000 15418000 22766000 22760000 32169000 1965200 39581000 23614000 17950000 22317000 19201000 19359000 15212000 21837000 3 3 2 3 3 3 3 3 3 3 3 11695000000 6224900000 5470000000 10086 1395 9372 53586;53587;53588;53589;53590 64876;64877;64878;64879;64880;64881 64878 6 KGLDPYNVLAPK Unmodified 1313.7343 0.73433683 608 P10606 COX5B Cytochrome c oxidase subunit 5B, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 55.318 55.168 3 0.00017996 16072 20211116_3428_TMUAki_TMT10x_P_F1 91.62 77.462 14041000 23621000 357940 24458000 20216000 26045000 15374000 24219000 21141000 19044000 21394000 13075000 22044000 1428700 24916000 19274000 26394000 16026000 24562000 21264000 18813000 20630000 4 4 3 4 4 4 4 4 4 4 4 8082300 13397000 220750 13591000 13918000 19871000 10386000 13766000 11918000 10357000 12153000 7525800 12502000 802080 13946000 13259000 19718000 10767000 14202000 12066000 10256000 11717000 2 2 1 2 2 2 2 2 2 2 2 5958900 10224000 137190 10866000 6298100 6173900 4988600 10453000 9223000 8687400 9240600 5549400 9542300 626640 10970000 6014300 6675200 5259700 10359000 9198100 8557300 8913500 2 2 2 2 2 2 2 2 2 2 2 1003600000 745680000 257950000 10087 608 9373 53591;53592 64882;64883;64884;64885 64882 4 KGLIEVK Unmodified 785.50109 0.50108942 2706 Q9BWD1;Q9BWD1-2 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 40.464 40.699 3 0.0042693 9774 20211116_3447_TMUAki_TMT10x_S_F8 95.099 18.2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10088 2706 9374 53593;53594 64886;64887 64887 2 KGLPLGSAVSSPVLFSPVGR Unmodified 1967.1204 0.12039649 2300 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 yes yes 0 0 0 1 By matching By MS/MS 6 0 2 1 1 67.462 67.416 3 9.9142E-13 21014 20211116_3445_TMUAki_TMT10x_S_F6 127.5 100.78 7048700 12726000 265740 11524000 9555900 9480000 8079700 10674000 9600700 9255300 10924000 6565000 11871000 867160 11811000 9141600 9810500 8319800 10750000 9747500 9097700 10497000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7048700 12726000 265740 11524000 9555900 9480000 8079700 10674000 9600700 9255300 10924000 6565000 11871000 867160 11811000 9141600 9810500 8319800 10750000 9747500 9097700 10497000 2 2 2 2 2 2 2 2 2 2 2 667460000 349110000 318350000 10089 2300 9375 53595;53596 64888;64889 64888 2 KGLTPSQIGVILR Unmodified 1380.8453 0.84528426 1347 P62277 RPS13 40S ribosomal protein S13 yes yes 0 0 0 1 By MS/MS By MS/MS 3.33 1.25 1 1 3 2 2 6 3 54.409 54.382 2;3 7.0712E-23 18052 20211116_3430_TMUAki_TMT10x_P_F3 181.76 153.66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10090 1347 9376 53597;53598;53599;53600;53601;53602;53603;53604;53605 64890;64891;64892;64893;64894;64895;64896;64897;64898 64892 9 KGMVFSINLGFSDLTNK Oxidation (M) 1885.9608 0.96078431 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 1 1 By matching By MS/MS 3.33 0.471 2 1 1 2 72.631 72.411 3 0.00070667 26284 20211116_3441_TMUAki_TMT10x_S_F3 62.916 47.495 6999800 12231000 130380 11136000 7266100 8933300 8703800 8670800 8437800 9913900 9141700 6518500 11408000 705570 11405000 7011100 9230600 8745200 8866300 8620700 9631200 8796900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6999800 12231000 130380 11136000 7266100 8933300 8703800 8670800 8437800 9913900 9141700 6518500 11408000 705570 11405000 7011100 9230600 8745200 8866300 8620700 9631200 8796900 2 2 2 2 2 2 2 2 2 2 2 990880000 400860000 590020000 10091 3317 9377 53606;53607;53608 64899;64900 64899 3275 2 KGNFNYIEFTR Unmodified 1387.6884 0.68844927 145 O14950;P19105 MYL12B;MYL12A Myosin regulatory light chain 12B;Myosin regulatory light chain 12A yes no 0 0 0 1 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 50.096 49.983 3 5.3173E-10 13966 20211116_3428_TMUAki_TMT10x_P_F1 160.22 145.55 70233000 102580000 502190 148650000 92961000 86859000 65322000 44411000 61212000 51603000 74822000 65397000 95887000 6563300 147470000 88468000 91344000 67576000 47512000 62936000 50101000 71756000 9 9 7 9 9 9 9 9 9 9 9 51413000 74173000 143280 106910000 81702000 76403000 52601000 31783000 44418000 37228000 54094000 47871000 69334000 4774400 106290000 77614000 78713000 54624000 34730000 45889000 36135000 51883000 6 6 4 6 6 6 6 6 6 6 6 18821000 28404000 358910 41739000 11258000 10456000 12720000 12628000 16795000 14374000 20727000 17526000 26554000 1788900 41171000 10853000 12631000 12952000 12782000 17047000 13967000 19873000 3 3 3 3 3 3 3 3 3 3 3 4209200000 2865200000 1344100000 10092 145 9378 53609;53610;53611;53612;53613;53614 64901;64902;64903;64904;64905;64906;64907;64908;64909;64910 64902 10 KGNYAER Unmodified 836.41407 0.41406533 592;2391;2134 Q6FI13;P0C0S8;Q99878;Q9BTM1;Q16777;Q96KK5;Q9BTM1-2;Q8IUE6;Q93077 HIST2H2AA3;HIST1H2AG;HIST1H2AJ;H2AFJ;HIST2H2AC;HIST1H2AH;HIST2H2AB;HIST1H2AC Histone H2A type 2-A;Histone H2A type 1;Histone H2A type 1-J;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-H;Histone H2A type 2-B;Histone H2A type 1-C no no 0 0 0 1 By MS/MS By MS/MS 4 1 1 1 1 1 25.064 24.875 3 0.0096915 4425 20211116_3433_TMUAki_TMT10x_P_F5 91.069 60.902 2190000 3643400 5939 2090700 2247100 4478500 2296700 2718400 2562700 2421800 2845800 2039100 3393900 187900 2278300 2156200 4375600 2335200 2843800 2605500 2377500 2736500 2 2 2 2 2 2 2 2 2 2 2 1942600 3230500 3954.4 1832900 1894600 4021600 1970400 2410700 2268600 2134500 2483600 1808800 3009100 164070 2001300 1818800 3925800 2003900 2524100 2302500 2096000 2389200 1 1 1 1 1 1 1 1 1 1 1 247410 412970 1984.6 257830 352510 456890 326240 307680 294020 287360 362260 230380 384760 23834 276960 337460 449820 331300 319750 302940 281490 347340 1 1 1 1 1 1 1 1 1 1 1 64773000 58699000 6073900 10093 592;2134;2391 9379 53615;53616 64911;64912 64911 2 KGPAPELQGVEVALAPEELELDPMAMTQK 2 Oxidation (M) 3122.5516 0.55155295 1633 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 2 1 By MS/MS 4 0 1 1 76.436 76.369 4 0.0012927 25669 20211116_3442_TMUAki_TMT10x_S_F4 53.968 47.464 1322200 3003500 0 2096900 2065900 2344000 2286800 2216200 2182100 2159100 2186200 1230900 2799200 89620 2206900 1984400 2369800 2304800 2258000 2224700 2111000 2108800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1322200 3003500 0 2096900 2065900 2344000 2286800 2216200 2182100 2159100 2186200 1230900 2799200 89620 2206900 1984400 2369800 2304800 2258000 2224700 2111000 2108800 1 1 0 1 1 1 1 1 1 1 1 1011700000 0 1011700000 10094 1633 9380 53617 64913 64913 2187;2188 1 KGPDEAEESQYDSGIESLR Unmodified 2108.9498 0.94982151 72 O00221 NFKBIE NF-kappa-B inhibitor epsilon yes yes 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 45.064 44.932 3 2.0156E-08 13626 20211116_3429_TMUAki_TMT10x_P_F2 111.49 75.377 477690 842460 24915 1032400 1111100 1367700 802160 754750 820830 627960 776720 444960 786810 71695 1044900 1059100 1358800 830390 794510 832670 618530 750640 1 1 1 1 1 1 1 1 1 1 1 477690 842460 24915 1032400 1111100 1367700 802160 754750 820830 627960 776720 444960 786810 71695 1044900 1059100 1358800 830390 794510 832670 618530 750640 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 154270000 154270000 0 10095 72 9381 53618;53619 64914 64914 1 KGPDGLALPNNYCDFCLGDSK Unmodified 2340.0515 0.051466583 2364 Q92785 DPF2 Zinc finger protein ubi-d4 yes yes 0 0 0 1 By MS/MS 7 0 1 1 65.102 65.711 3 0.0034181 21737 20211116_3435_TMUAki_TMT10x_P_F7 57.293 42.038 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10096 2364 9382 53620 64915 64915 1 KGPELPLVPVKR Unmodified 1331.8289 0.82890592 2436 Q96DI7;Q96DI7-2 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes no 0 0 0 2 By MS/MS 3 0 1 1 44.569 44.603 4 0.033998 13923 20211116_3430_TMUAki_TMT10x_P_F3 54.524 32.612 504230 819040 17926 795770 1279800 1460600 839460 1065900 975670 794110 797560 469620 764170 69372 823400 1217100 1438100 878740 1095500 980300 786770 774890 1 1 1 1 1 1 1 1 1 1 1 504230 819040 17926 795770 1279800 1460600 839460 1065900 975670 794110 797560 469620 764170 69372 823400 1217100 1438100 878740 1095500 980300 786770 774890 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 138200000 138200000 0 10097 2436 9383 53621 64916 64916 1 KGPGPGGPGGAGVAR Unmodified 1233.6578 0.65781785 2356 Q92686 NRGN Neurogranin;NEUG(55-78) yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 28.179 28.226 3 8.3425E-10 5393 20211116_3428_TMUAki_TMT10x_P_F1 134.04 99.837 135250 232040 3888.8 216820 163040 179710 140360 97439 117670 88534 155430 125960 216460 14505 221710 155950 183510 142850 102950 122040 86834 148770 2 2 1 2 2 2 2 2 2 2 2 106750 188270 3888.8 172430 136960 157660 107670 76256 100020 69517 125200 99427 175620 12898 176800 130830 159700 110510 81439 102980 68171 120000 1 1 1 1 1 1 1 1 1 1 1 28500 43769 0 44389 26075 22043 32680 21183 17653 19017 30232 26531 40843 1606.9 44906 25121 23815 32339 21516 19063 18662 28775 1 1 0 1 1 1 1 1 1 1 1 8369400 6314700 2054700 10098 2356 9384 53622;53623 64917 64917 1 KGPGRPTGSK Unmodified 983.55123 0.55122751 817 P26583 HMGB2 High mobility group protein B2 yes yes 0 0 0 2 By MS/MS 3 0 2 2 25.661 25.361 3;4 0.0058219 7236 20211116_3441_TMUAki_TMT10x_S_F3 72.652 39.706 654590 1058100 9379.3 727600 683730 802530 832600 503080 560030 507260 733810 609540 986120 60699 766740 659730 806210 828320 526740 587830 495240 702500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 654590 1058100 9379.3 727600 683730 802530 832600 503080 560030 507260 733810 609540 986120 60699 766740 659730 806210 828320 526740 587830 495240 702500 2 2 1 2 2 2 2 2 2 2 2 35067000 0 35067000 10099 817 9385 53624;53625 64918;64919 64918 2 KGPILLHDNARPHVAQPTLQK Unmodified 2332.3128 0.31278214 1907 Q53H47;Q53H47-3 SETMAR Histone-lysine N-methyltransferase SETMAR;Histone-lysine N-methyltransferase;Transposon Hsmar1 transposase yes no 0 0 0 2 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 37.968 37.72 6 1.376E-05 12108 20211116_3441_TMUAki_TMT10x_S_F3 80.752 72.464 1577000 2605600 22989 2979900 2500100 2105800 1538300 2087700 2293300 1806200 2305000 1468500 2432700 152690 3000500 2373700 2198700 1634100 2115100 2300500 1775600 2223200 3 3 2 3 3 3 3 3 3 3 3 696730 1117200 0 1224700 1668700 1378800 777490 774900 851470 691830 926540 648620 1042800 58969 1244100 1576800 1381500 837530 815850 865650 679100 891480 1 1 0 1 1 1 1 1 1 1 1 880320 1488400 22989 1755100 831470 727000 760830 1312800 1441900 1114400 1378400 819840 1389900 93725 1756300 796870 817200 796520 1299300 1434800 1096500 1331700 2 2 2 2 2 2 2 2 2 2 2 78175000 41272000 36903000 10100 1907 9386 53626;53627 64920;64921;64922 64921 3 KGPQSLFNAPR Unmodified 1213.6568 0.65675521 1042 P46087;P46087-2;P46087-4;P46087-3 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 39.722 39.703 3 8.0503E-06 13055 20211116_3441_TMUAki_TMT10x_S_F3 114.72 89.379 3784200 5676300 131130 7522100 10606000 8094200 4711200 7017200 8041500 5779100 6738600 3524400 5303500 530080 7552000 10029000 8186300 5190000 7151900 7988900 5695200 6540800 3 3 2 3 3 3 3 3 3 3 3 2130400 2992500 113720 4128700 9081600 6591400 3352900 4024100 4782900 3373300 3876800 1984500 2796500 379960 4168600 8570700 6505300 3744800 4201500 4771000 3321400 3767900 1 1 1 1 1 1 1 1 1 1 1 1653800 2683800 17417 3393400 1524000 1502800 1358300 2993100 3258600 2405800 2861700 1539900 2507000 150120 3383400 1458100 1681100 1445200 2950400 3217800 2373800 2772900 2 2 1 2 2 2 2 2 2 2 2 299160000 162890000 136270000 10101 1042 9387 53628;53629;53630 64923;64924 64924 2 KGQACVQLAR Unmodified 1129.6026 0.60261115 1937 Q5T280 C9orf114 Putative methyltransferase C9orf114 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 30.621 30.646 3 0.0037185 8206 20211116_3439_TMUAki_TMT10x_S_F1 73.887 49.505 313460 518050 5403.4 531950 457800 487500 355840 309270 331190 261910 407180 291870 483450 29247 541030 436480 495370 365510 322020 340700 257740 390440 2 2 1 2 2 2 2 2 2 2 2 128530 243760 5403.4 238310 280240 312140 182370 158350 175390 127650 185720 119720 227430 17817 244610 266570 309980 189890 167840 179100 125940 178830 1 1 1 1 1 1 1 1 1 1 1 184930 274290 0 293640 177560 175360 173460 150920 155800 134250 221460 172160 256010 11430 296430 169900 185390 175620 154180 161600 131800 211610 1 1 0 1 1 1 1 1 1 1 1 25599000 17200000 8398500 10102 1937 9388 53631;53632 64925 64925 1 KGQAVDYEGSRTQEEIVAK Unmodified 2107.0546 0.054561351 654 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 2 By MS/MS 4.5 0.5 1 1 2 37.622 37.633 4 3.5651E-06 9466 20211116_3431_TMUAki_TMT10x_P_F4 95.5 67.649 629550 1025100 1839.1 1000600 1713200 1384900 799520 1088000 1161000 682170 1081400 586190 956450 69086 1028200 1619900 1380500 869960 1109000 1162500 682960 1045600 1 1 1 1 1 1 1 1 1 1 1 629550 1025100 1839.1 1000600 1713200 1384900 799520 1088000 1161000 682170 1081400 586190 956450 69086 1028200 1619900 1380500 869960 1109000 1162500 682960 1045600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 238360000 238360000 0 10103 654 9389 53633;53634 64926 64926 1 KGQLNADEISLRPAQSFLMNK Oxidation (M) 2375.2267 0.22672883 1426 P78344 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes yes 0 0 1 2 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 58.682 58.569 4 0.0023784 17923 20211116_3440_TMUAki_TMT10x_S_F2 58.997 44.227 27111000 44693000 69706 43865000 34286000 44504000 27884000 43272000 42668000 38585000 39611000 25243000 41700000 2384700 44817000 32717000 45270000 29076000 43917000 42651000 37877000 38305000 4 4 2 4 4 4 4 4 4 4 4 12393000 19941000 8519.1 19182000 17641000 30760000 15474000 18403000 18815000 17412000 17513000 11539000 18605000 1092000 19796000 16860000 30344000 15912000 19305000 18948000 17046000 16935000 2 2 1 2 2 2 2 2 2 2 2 14718000 24751000 61187 24682000 16646000 13744000 12410000 24869000 23853000 21172000 22097000 13704000 23095000 1292700 25021000 15857000 14926000 13164000 24613000 23703000 20830000 21371000 2 2 1 2 2 2 2 2 2 2 2 1599500000 509080000 1090400000 10104 1426 9390 53635;53636 64927;64928;64929;64930 64930 1916 4 KGQTHTLEDFQR Unmodified 1458.7215 0.72154031 2598 Q99714;Q99714-2 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 0 0 0 1 By MS/MS 4.5 0.5 2 2 4 31.408 31.392 3;4 5.2133E-09 7246 20211116_3433_TMUAki_TMT10x_P_F5 148.69 124.34 610150 978710 7356.1 1167600 2183100 1318300 794320 677890 761670 594820 921280 568150 913950 77842 1180000 2058700 1319300 877320 719070 781960 584350 883780 2 2 1 2 2 2 2 2 2 2 2 610150 978710 7356.1 1167600 2183100 1318300 794320 677890 761670 594820 921280 568150 913950 77842 1180000 2058700 1319300 877320 719070 781960 584350 883780 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 115950000 115950000 0 10105 2598 9391 53637;53638;53639;53640 64931;64932 64932 2 KGRPDPYAYIPLNR Unmodified 1658.8893 0.88927434 1920 Q5JTH9;Q5JTH9-2;Q5JTH9-3 RRP12 RRP12-like protein yes no 0 0 0 2 By MS/MS 3 0 1 1 44.189 43.854 4 3.9976E-06 14571 20211116_3441_TMUAki_TMT10x_S_F3 110.51 86.678 1136500 1987500 22295 1938400 1053900 835100 866010 1579400 1548500 1353700 1558000 1058400 1854300 113850 1964400 1007200 935520 909390 1561500 1545800 1331400 1502700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1136500 1987500 22295 1938400 1053900 835100 866010 1579400 1548500 1353700 1558000 1058400 1854300 113850 1964400 1007200 935520 909390 1561500 1545800 1331400 1502700 1 1 1 1 1 1 1 1 1 1 1 114700000 0 114700000 10106 1920 9392 53641 64933 64933 1 KGRPYDYNGPR Unmodified 1321.6527 0.65273247 654 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 2 By matching By MS/MS 1 0 2 1 1 28.616 28.657 3 0.051583 7385 20211116_3439_TMUAki_TMT10x_S_F1 55.452 42.039 36632 47923 1269.4 57016 46980 48611 48644 53619 55941 40487 53903 34118 44751 4365 57398 45165 50153 49480 53870 56518 40083 52061 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36632 47923 1269.4 57016 46980 48611 48644 53619 55941 40487 53903 34118 44751 4365 57398 45165 50153 49480 53870 56518 40083 52061 1 1 1 1 1 1 1 1 1 1 1 4850400 1896900 2953400 10107 654 9393 53642;53643 64934 64934 1 KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSR Unmodified 3841.9738 0.97379842 518 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 7.38 0.696 1 3 4 6 2 79.54 79.542 4;5 1.0632E-16 26622 20211116_3435_TMUAki_TMT10x_P_F7 107.21 103.44 18396000 30917000 241220 27350000 16857000 30877000 23409000 17323000 15554000 18293000 21749000 17130000 28835000 956770 28206000 16339000 30933000 23159000 18326000 16387000 17826000 20789000 8 8 3 8 8 8 8 8 8 8 8 14738000 24537000 241220 21758000 12509000 26237000 18349000 13473000 12486000 14786000 17140000 13724000 22885000 865400 22460000 12156000 26165000 18125000 14382000 13124000 14386000 16390000 6 6 3 6 6 6 6 6 6 6 6 3658100 6380100 0 5591900 4347500 4639900 5060600 3849400 3068300 3507500 4609300 3405700 5950400 91368 5746100 4183600 4767800 5034200 3943500 3263300 3439700 4398700 2 2 0 2 2 2 2 2 2 2 2 20576000000 13261000000 7315000000 10108 518 9394 53644;53645;53646;53647;53648;53649;53650;53651 64935;64936;64937;64938;64939;64940;64941;64942 64935 8 KGSLESPATDVFGSTEEGEKR Unmodified 2223.0655 0.065519968 74 O00232;O00232-2 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes no 0 0 0 2 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 45.623 45.766 4 4.2909E-44 12904 20211116_3433_TMUAki_TMT10x_P_F5 205.08 195.9 10840000 19902000 305830 20924000 19759000 23808000 12571000 29143000 27368000 21585000 21631000 10096000 18575000 1303200 21317000 18783000 24196000 13585000 29135000 26992000 21393000 21044000 7 7 6 7 7 7 7 7 7 7 7 4491400 8106700 140970 8325300 15174000 18660000 9299800 12121000 11811000 8806600 9087800 4183000 7565300 653360 8632300 14410000 18225000 9818000 12555000 11809000 8737500 8851000 3 3 3 3 3 3 3 3 3 3 3 6348800 11796000 164860 12599000 4585200 5148100 3271400 17021000 15558000 12779000 12543000 5912500 11010000 649790 12685000 4373100 5971000 3767400 16580000 15183000 12655000 12193000 4 4 3 4 4 4 4 4 4 4 4 3683100000 2289700000 1393300000 10109 74 9395 53652;53653;53654;53655;53656;53657 64943;64944;64945;64946;64947;64948;64949 64944 7 KGTDIMYTGTLDCWR Oxidation (M) 1831.8233 0.82330455 502 P05141 SLC25A5 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed yes yes 0 0 1 1 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 51.322 51.744 3 8.1615E-05 16581 20211116_3446_TMUAki_TMT10x_S_F7 83.37 76.537 10986000 19704000 101020 20690000 14701000 15901000 14866000 8004200 7216600 9238900 14264000 10229000 18390000 1027100 20966000 14104000 16317000 14834000 8573600 7926400 8972300 13542000 2 2 1 2 2 2 2 2 2 2 2 4861500 8529700 101020 9226500 9150000 11050000 8773900 3834400 3395200 3787300 5802200 4527300 7961700 557270 9390600 8770100 10982000 8752900 4261300 3774800 3700800 5522600 1 1 1 1 1 1 1 1 1 1 1 6124100 11174000 0 11463000 5550700 4851300 6091900 4169800 3821400 5451600 8461900 5701900 10428000 469860 11575000 5333900 5334700 6080700 4312300 4151600 5271500 8019300 1 1 0 1 1 1 1 1 1 1 1 2397400000 1325100000 1072300000 10110 502 9396 53658;53659;53660 64950;64951 64951 405 2 KGTDIMYTGTLDCWR Unmodified 1815.8284 0.82838993 502 P05141 SLC25A5 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 57.846 58.195 3 1.0035E-06 16898 20211116_3447_TMUAki_TMT10x_S_F8 113.33 102.07 50333000 80633000 698010 92593000 61109000 59378000 58307000 36901000 33145000 37081000 58499000 46870000 75284000 4970200 93118000 58566000 62034000 58511000 38658000 35720000 36208000 55647000 8 8 7 8 8 8 8 8 8 8 8 27819000 43086000 380280 48905000 36497000 42383000 36876000 19883000 18050000 19325000 31142000 25905000 40226000 2778100 49383000 35028000 43074000 36803000 21334000 19651000 18897000 29636000 4 4 3 4 4 4 4 4 4 4 4 22515000 37547000 317730 43688000 24612000 16994000 21431000 17018000 15094000 17756000 27357000 20966000 35058000 2192100 43736000 23539000 18960000 21708000 17324000 16068000 17311000 26011000 4 4 4 4 4 4 4 4 4 4 4 2789100000 1311700000 1477400000 10111 502 9396 53661;53662;53663;53664 64952;64953;64954;64955;64956;64957;64958;64959 64958 8 KGTDIMYTGTLDCWRK Unmodified 1943.9234 0.92335294 502 P05141 SLC25A5 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed yes yes 0 0 0 2 By MS/MS 2 0 1 1 53.975 53.724 4 0.001272 17074 20211116_3429_TMUAki_TMT10x_P_F2 65.716 56.155 6632000 10117000 179470 13390000 13019000 11690000 10198000 5583200 4875800 5322900 7802700 6176400 9452200 806550 13403000 12423000 11877000 10327000 5977100 5297100 5209400 7436300 1 1 1 1 1 1 1 1 1 1 1 6632000 10117000 179470 13390000 13019000 11690000 10198000 5583200 4875800 5322900 7802700 6176400 9452200 806550 13403000 12423000 11877000 10327000 5977100 5297100 5209400 7436300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 706820000 706820000 0 10112 502 9397 53665 64960 64960 1 KGTGIAAQTAGIAAAAR Unmodified 1526.8529 0.85288884 1442 P82912;P82912-2;P82912-3 MRPS11 28S ribosomal protein S11, mitochondrial yes no 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 39.59 39.489 3 1.1834E-11 12892 20211116_3441_TMUAki_TMT10x_S_F3 139.11 117.35 2683700 4246900 19507 5599600 2248700 1938600 1887900 2574300 2566700 2108800 3302800 2498900 3967800 230940 5562200 2148100 2215000 1954900 2571300 2607600 2078700 3163300 4 4 3 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2683700 4246900 19507 5599600 2248700 1938600 1887900 2574300 2566700 2108800 3302800 2498900 3967800 230940 5562200 2148100 2215000 1954900 2571300 2607600 2078700 3163300 4 4 3 4 4 4 4 4 4 4 4 113400000 0 113400000 10113 1442 9398 53666;53667 64961;64962;64963;64964 64962 4 KGTMTTGHNVADLVVILK Oxidation (M) 1912.0452 0.045182639 1575 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 1 1 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 55.935 55.781 4 2.5677E-08 16684 20211116_3440_TMUAki_TMT10x_S_F2 112.24 77.962 7767300 12387000 122060 13193000 11068000 15225000 9633700 9900600 10595000 9212500 10236000 7232700 11561000 757030 13432000 10581000 15265000 9876600 10314000 10724000 9025700 9885500 3 3 1 3 3 3 3 3 3 3 3 5090900 8259900 122060 8909200 8688300 12567000 7247000 6616600 7234000 5952500 6635900 4740800 7709800 559410 9097700 8300100 12443000 7425900 7007700 7338700 5840900 6420000 2 2 1 2 2 2 2 2 2 2 2 2676500 4126600 0 4283300 2379900 2657100 2386700 3284000 3360900 3259900 3600100 2491900 3851200 197620 4334300 2280900 2821300 2450700 3306600 3385000 3184800 3465500 1 1 0 1 1 1 1 1 1 1 1 1193500000 702050000 491400000 10114 1575 9399 53668;53669;53670 64965;64966;64967 64967 2122 3 KGTPWEGGLFK Unmodified 1218.6397 0.63970816 1408 P63279 UBE2I SUMO-conjugating enzyme UBC9 yes yes 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 55.356 55.253 3 0.00033692 16477 20211116_3440_TMUAki_TMT10x_S_F2 86.803 47.178 14522000 23476000 0 25933000 25018000 20905000 14022000 13663000 13641000 12500000 18708000 13520000 21915000 1184300 26207000 23701000 21444000 14786000 14222000 14074000 12256000 17890000 2 2 0 2 2 2 2 2 2 2 2 8585700 13110000 0 14164000 19477000 16375000 9515200 7815200 7923400 7119500 10603000 7993300 12237000 758680 14408000 18418000 16353000 10123000 8357200 8225400 6981900 10145000 1 1 0 1 1 1 1 1 1 1 1 5936700 10366000 0 11769000 5540900 4529300 4507000 5847900 5718000 5380800 8105100 5527200 9678200 425670 11799000 5282900 5090300 4663200 5865200 5848800 5274400 7744800 1 1 0 1 1 1 1 1 1 1 1 662960000 269030000 393930000 10115 1408 9400 53671;53672 64968;64969 64969 2 KGTQCVEQIQELVLR Unmodified 1799.9564 0.95636763 3060 Q9P287;Q9P287-2;Q9P287-4;Q9P287-3 BCCIP BRCA2 and CDKN1A-interacting protein yes no 0 0 0 1 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 59.194 59.551 3 9.7356E-30 17960 20211116_3436_TMUAki_TMT10x_P_F8 200.58 167.32 26940000 45165000 118520 42450000 33809000 43471000 30094000 32987000 27230000 31120000 34006000 25083000 42134000 2329500 43513000 32325000 43987000 30632000 34012000 28068000 30470000 32594000 4 4 2 4 4 4 4 4 4 4 4 14245000 23937000 118520 22913000 20269000 30728000 18839000 17713000 14709000 16622000 18403000 13265000 22332000 1375800 23564000 19406000 30529000 19056000 18634000 15276000 16279000 17638000 2 2 2 2 2 2 2 2 2 2 2 12694000 21228000 0 19537000 13541000 12743000 11255000 15274000 12521000 14498000 15603000 11819000 19802000 953700 19949000 12919000 13458000 11575000 15379000 12792000 14192000 14956000 2 2 0 2 2 2 2 2 2 2 2 6500900000 3405700000 3095200000 10116 3060 9401 53673;53674;53675;53676;53677 64970;64971;64972;64973;64974 64972 5 KGTVEGFEPADNK Unmodified 1390.6729 0.67285879 962 P37108 SRP14 Signal recognition particle 14 kDa protein yes yes 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 38.975 38.981 3 1.4149E-12 9350 20211116_3444_TMUAki_TMT10x_S_F5 129.01 96.059 1188900 2009400 0 2112400 3773100 2436000 1598800 1344400 1649500 1153500 1669900 1107000 1875400 131470 2152500 3562900 2437100 1737000 1416300 1676600 1134500 1610300 2 2 0 2 2 2 2 2 2 2 2 1188900 2009400 0 2112400 3773100 2436000 1598800 1344400 1649500 1153500 1669900 1107000 1875400 131470 2152500 3562900 2437100 1737000 1416300 1676600 1134500 1610300 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 62527000 62527000 0 10117 962 9402 53678;53679 64975;64976;64977 64977 3 KGTVLLADNVICPGAPDFLAHVR Unmodified 2462.3104 0.31039888 761 P21964;P21964-2 COMT Catechol O-methyltransferase yes no 0 0 0 1 By MS/MS By MS/MS 3 2 1 3 3 1 7 1 57.015 56.959 4 1.0677E-12 23240 20211116_3429_TMUAki_TMT10x_P_F2 121.25 114.26 16629000 29648000 591800 26678000 19916000 37745000 23587000 23619000 20534000 22766000 25251000 15488000 27654000 1736900 27591000 19224000 37452000 23639000 24702000 21191000 22270000 24213000 11 11 8 11 11 11 11 11 11 11 11 14120000 25169000 591800 22478000 15624000 33350000 20313000 20148000 16976000 19538000 20381000 13151000 23475000 1736900 23284000 15135000 33008000 20256000 21133000 17537000 19107000 19556000 10 10 8 10 10 10 10 10 10 10 10 2509700 4479800 0 4199200 4291600 4394600 3274100 3471600 3558100 3228800 4869900 2336800 4179000 0 4306600 4089400 4444100 3383000 3569000 3653900 3163400 4657200 1 1 0 1 1 1 1 1 1 1 1 8143300000 5349600000 2793700000 10118 761 9403 53680;53681;53682;53683;53684;53685;53686;53687 64978;64979;64980;64981;64982;64983;64984;64985;64986;64987;64988 64980 11 KGVAINFVK Unmodified 974.5913 0.59130141 973 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 3.25 0.829 1 1 2 3 1 47.48 47.481 3 1.1772E-05 15004 20211116_3430_TMUAki_TMT10x_P_F3 113.62 83.052 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10119 973 9404 53688;53689;53690;53691 64989;64990;64991;64992 64990 4 KGVAINFVTEEDKR Unmodified 1604.8522 0.85222014 1697 Q14240;Q14240-2 EIF4A2 Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed yes no 0 0 0 2 By MS/MS By MS/MS 6.43 0.728 1 2 4 4 3 45.468 45.752 3;4 3.1248E-33 13623 20211116_3435_TMUAki_TMT10x_P_F7 230.86 210.2 22413000 33534000 229340 34006000 38712000 38966000 26290000 29026000 26691000 25219000 29818000 20869000 31293000 2157000 34732000 36811000 39166000 27329000 29899000 27247000 24787000 28667000 6 6 3 6 6 6 6 6 6 6 6 15341000 23371000 110950 22954000 31518000 32290000 19142000 19739000 17845000 17114000 20487000 14284000 21806000 1512900 23585000 29911000 32037000 20024000 20624000 18305000 16822000 19681000 4 4 2 4 4 4 4 4 4 4 4 7072400 10163000 118390 11052000 7193800 6675100 7147500 9286700 8846600 8104800 9330600 6585500 9486700 644090 11147000 6900200 7128800 7305000 9274900 8942700 7964300 8985900 2 2 1 2 2 2 2 2 2 2 2 3597400000 2174400000 1423000000 10120 1697 9405 53692;53693;53694;53695;53696;53697;53698 64993;64994;64995;64996;64997;64998;64999;65000 64995 8 KGVAINMVTEEDKR Oxidation (M) 1604.8192 0.81920545 1277 P60842 EIF4A1 Eukaryotic initiation factor 4A-I yes yes 0 0 1 2 By MS/MS By MS/MS 5.5 0.806 1 4 4 1 6 4 33.165 33.255 3;4 2.8923E-06 7185 20211116_3434_TMUAki_TMT10x_P_F6 108.36 74.575 6982400 11130000 31480 9979500 13706000 13436000 8351300 7981300 8139800 7661400 9087300 6500500 10381000 573380 10314000 13002000 13352000 8744500 8380600 8323700 7495700 8736900 14 14 5 14 14 14 14 14 14 14 14 5508800 8776900 28978 7613100 12192000 12053000 6794100 6147300 6252900 5994700 6965300 5128600 8185500 470800 7915200 11550000 11872000 7157100 6543600 6410200 5861000 6697100 7 7 4 7 7 7 7 7 7 7 7 1473600 2352700 2501.8 2366400 1514000 1382600 1557200 1834000 1886900 1666700 2122000 1371900 2195400 102580 2398500 1452000 1479300 1587400 1836900 1913500 1634700 2039700 7 7 1 7 7 7 7 7 7 7 7 901480000 757150000 144330000 10121 1277 9406 53699;53700;53701;53702;53703;53704;53705;53706;53707;53708 65001;65002;65003;65004;65005;65006;65007;65008 65006 1730 8 KGVAINMVTEEDKR Unmodified 1588.8243 0.82429083 1277 P60842 EIF4A1 Eukaryotic initiation factor 4A-I yes yes 0 0 0 2 By MS/MS By MS/MS 6.75 0.829 4 2 2 5 3 40.256 40.449 3;4 4.0226E-37 9756 20211116_3434_TMUAki_TMT10x_P_F6 242.41 206.68 35949000 52529000 454410 52261000 73374000 53970000 42235000 21496000 16494000 22421000 38688000 33475000 49014000 3915500 53359000 69598000 54146000 43672000 23522000 18694000 21859000 36633000 10 10 8 10 10 10 10 10 10 10 10 33571000 48988000 436290 48703000 71044000 52141000 39860000 19906000 15025000 20634000 35768000 31261000 45710000 3703900 49756000 67362000 52182000 41294000 21887000 17108000 20122000 33862000 7 7 6 7 7 7 7 7 7 7 7 2378400 3541700 18127 3558400 2329200 1828100 2374700 1590200 1469600 1787000 2919000 2214700 3304800 211570 3603100 2235500 1963800 2378400 1634700 1586100 1737200 2771000 3 3 2 3 3 3 3 3 3 3 3 2777500000 2557000000 220550000 10122 1277 9406 53709;53710;53711;53712;53713;53714;53715;53716 65009;65010;65011;65012;65013;65014;65015;65016;65017;65018;65019;65020 65009 12 KGVITVK Unmodified 743.49052 0.49052473 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 1 By MS/MS 2.33 0.471 2 1 3 27.917 27.881 3 0.0050079 11305 20211116_3441_TMUAki_TMT10x_S_F3 90.657 36.107 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10123 613 9407 53717;53718;53719 65021;65022;65023 65023 3 KGVLFGVPGAFTPGCSK Unmodified 1720.8971 0.89706184 860 P30044;P30044-2;P30044-3 PRDX5 Peroxiredoxin-5, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 5.17 0.687 1 3 2 3 3 63.386 63.431 3 2.6068E-05 19082 20211116_3434_TMUAki_TMT10x_P_F6 87.429 75.513 16233000 26576000 283560 26007000 20809000 24662000 19021000 21586000 20038000 20573000 21669000 15117000 24796000 1674200 26551000 19925000 25137000 19419000 22072000 20399000 20135000 20853000 4 4 4 4 4 4 4 4 4 4 4 6335300 9431100 115750 9517700 7676500 13206000 7624300 7877400 7182800 7761300 7707500 5899600 8800600 651900 9758700 7366300 13106000 7722800 8274700 7345200 7584900 7418900 2 2 2 2 2 2 2 2 2 2 2 9898100 17144000 167810 16489000 13133000 11455000 11397000 13708000 12855000 12812000 13962000 9217300 15995000 1022300 16792000 12559000 12031000 11696000 13797000 13054000 12550000 13434000 2 2 2 2 2 2 2 2 2 2 2 3866700000 1394700000 2472000000 10124 860 9408 53720;53721;53722;53723;53724;53725 65024;65025;65026;65027 65026 4 KGVNLPGAAVDLPAVSEK Unmodified 1763.9781 0.97814893 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 1 By MS/MS By MS/MS 6.8 0.98 2 3 6 4 8 7 58.191 58.508 2;3;4 2.0173E-39 18706 20211116_3435_TMUAki_TMT10x_P_F7 211.82 197.13 149750000 250290000 1206800 277570000 220610000 258280000 168640000 157670000 175140000 160350000 188440000 139430000 233650000 13260000 280950000 210210000 262040000 173980000 165470000 178360000 156490000 181370000 23 23 11 23 23 23 23 23 23 23 23 103540000 168990000 1091600 189770000 184930000 225760000 138760000 107410000 121000000 110760000 128240000 96408000 157770000 9772200 192660000 176160000 225110000 142620000 115280000 124130000 108030000 123480000 16 16 9 16 16 16 16 16 16 16 16 46210000 81301000 115120 87799000 35682000 32512000 29876000 50259000 54135000 49588000 60208000 43024000 75887000 3488000 88284000 34055000 36930000 31359000 50184000 54227000 48458000 57892000 7 7 2 7 7 7 7 7 7 7 7 51362000000 29544000000 21818000000 10125 670;671 9409 53726;53727;53728;53729;53730;53731;53732;53733;53734;53735;53736;53737;53738;53739;53740 65028;65029;65030;65031;65032;65033;65034;65035;65036;65037;65038;65039;65040;65041;65042;65043;65044;65045;65046;65047;65048;65049;65050;65051 65037 24 KGVNLPGAAVDLPAVSEKDIQDLK Unmodified 2476.3537 0.35370348 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 2 By MS/MS By MS/MS 6.5 2.24 1 2 1 4 4 4 67.862 67.891 4;5 1.0255E-22 23135 20211116_3446_TMUAki_TMT10x_S_F7 156.89 143.44 72669000 166460000 1335300 82467000 176040000 329550000 156290000 508000000 354410000 356620000 249120000 67666000 155010000 7237800 93757000 168330000 324490000 165700000 502960000 348150000 354530000 243580000 18 18 11 18 18 18 18 18 18 18 18 27784000 59059000 608810 35311000 47642000 144100000 72626000 140560000 102310000 103490000 74229000 25874000 55020000 2394200 39327000 46346000 140010000 73280000 141980000 101790000 102600000 72476000 8 8 6 8 8 8 8 8 8 8 8 44886000 107400000 726450 47157000 128400000 185440000 83662000 367440000 252100000 253130000 174890000 41793000 99989000 4843600 54430000 121990000 184480000 92416000 360990000 246360000 251930000 171100000 10 10 5 10 10 10 10 10 10 10 10 20380000000 7822300000 12558000000 10126 670;671 9410 53741;53742;53743;53744;53745;53746;53747;53748 65052;65053;65054;65055;65056;65057;65058;65059;65060;65061;65062;65063;65064;65065;65066;65067;65068;65069 65063 18 KGVVPGGGLK Unmodified 910.56 0.56000128 360 O75822;O75822-2;O75822-3 EIF3J Eukaryotic translation initiation factor 3 subunit J yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 36.185 36.112 3 9.3994E-06 10351 20211116_3429_TMUAki_TMT10x_P_F2 104.22 64.917 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10127 360 9411 53749;53750 65070;65071 65070 2 KHEAFETDFTVHK Unmodified 1587.7682 0.76815616 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS 5.5 0.5 1 1 2 38.111 38.266 5 2.181E-06 8770 20211116_3444_TMUAki_TMT10x_S_F5 111.12 98.95 2303900 3432000 7916.5 3673400 2144200 1742000 2363700 1836700 1867400 1850800 2654600 2145200 3203400 196150 3701600 2062000 1895900 2370700 1863100 1949400 1807000 2536500 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2303900 3432000 7916.5 3673400 2144200 1742000 2363700 1836700 1867400 1850800 2654600 2145200 3203400 196150 3701600 2062000 1895900 2370700 1863100 1949400 1807000 2536500 3 3 3 3 3 3 3 3 3 3 3 292410000 0 292410000 10128 1663 9412 53751;53752 65072;65073;65074 65072 3 KHEAIETDIAAYEER Unmodified 1773.8533 0.85334235 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS By MS/MS 3.09 0.996 4 3 3 1 5 6 40.242 40.182 3;4 1.1999E-27 10445 20211116_3431_TMUAki_TMT10x_P_F4 168.42 150.93 15132000 24498000 242330 29756000 33951000 33298000 20819000 25645000 26339000 21890000 23285000 14090000 22878000 1621800 30037000 32230000 33531000 21975000 26348000 26445000 21534000 22557000 14 14 8 14 14 14 14 14 14 14 14 10571000 16995000 160090 21012000 29961000 29549000 17013000 18205000 18855000 15671000 16187000 9843700 15873000 1225000 21280000 28408000 29321000 17991000 19006000 19007000 15410000 15697000 6 6 4 6 6 6 6 6 6 6 6 4560100 7502300 82237 8743100 3989500 3748700 3805700 7440100 7483400 6219100 7098500 4246100 7005100 396850 8757000 3822400 4210000 3983700 7341700 7438500 6124200 6859600 8 8 4 8 8 8 8 8 8 8 8 1137100000 709080000 428030000 10129 1475 9413 53753;53754;53755;53756;53757;53758;53759;53760;53761;53762;53763 65075;65076;65077;65078;65079;65080;65081;65082;65083;65084;65085;65086;65087;65088;65089 65081 15 KHEALMSDLSAYGSSIQALR Oxidation (M) 2192.0896 0.089566649 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 1 1 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 50.197 50.605 4 3.1621E-09 15988 20211116_3446_TMUAki_TMT10x_S_F7 113.73 100.75 13188000 24031000 406610 23372000 16498000 20779000 13964000 17721000 18703000 16107000 19546000 12282000 22421000 1518700 23851000 15780000 21259000 14444000 18124000 18850000 15797000 18829000 5 5 5 5 5 5 5 5 5 5 5 6134600 9814400 77347 9847600 9192800 13729000 7669800 6999400 8121300 6813600 8883400 5712500 9158000 623520 10102000 8780900 13595000 7873400 7450600 8269400 6662100 8545900 2 2 2 2 2 2 2 2 2 2 2 7053300 14216000 329260 13524000 7305600 7050300 6294400 10722000 10582000 9293100 10662000 6569800 13263000 895160 13749000 6999400 7664200 6570300 10673000 10581000 9135000 10283000 3 3 3 3 3 3 3 3 3 3 3 2035500000 1630400000 405110000 10130 1663 9414 53764;53765;53766 65090;65091;65092;65093;65094 65092 2228 5 KHEALMSDLSAYGSSIQALR Unmodified 2176.0947 0.094652027 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS 8 0 1 1 59.039 59.03 4 7.5015E-07 17285 20211116_3447_TMUAki_TMT10x_S_F8 92.932 76.989 1480800 2543900 0 2728100 1497800 1994600 1695500 2615800 2132900 2111400 2116700 1378700 2374400 116570 2759100 1440800 2091200 1723000 2613100 2150100 2082900 2042400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1480800 2543900 0 2728100 1497800 1994600 1695500 2615800 2132900 2111400 2116700 1378700 2374400 116570 2759100 1440800 2091200 1723000 2613100 2150100 2082900 2042400 1 1 0 1 1 1 1 1 1 1 1 386540000 0 386540000 10131 1663 9414 53767 65095 65095 1 KHEEFIATIR Unmodified 1242.6721 0.67207093 2480 Q96GY0 ZC2HC1A Zinc finger C2HC domain-containing protein 1A yes yes 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 34.146 34.211 4 0.00046874 7132 20211116_3444_TMUAki_TMT10x_S_F5 94.363 79.219 811000 1198700 24809 1328400 1143900 1081100 864740 733920 710630 706560 949090 755310 1119000 95021 1342300 1091300 1108800 886970 762900 738150 691190 908170 2 2 2 2 2 2 2 2 2 2 2 530900 735670 16084 823020 886080 839670 545590 472920 448740 443770 611310 494440 686780 63980 833700 842030 846130 568220 498470 466520 434610 584680 1 1 1 1 1 1 1 1 1 1 1 280110 463010 8724.1 505390 257840 241460 319160 260990 261890 262790 337770 260870 432200 31041 508640 249300 262710 318760 264430 271620 256580 323490 1 1 1 1 1 1 1 1 1 1 1 83817000 54298000 29519000 10132 2480 9415 53768;53769 65096;65097 65097 2 KHFTILDAPGHK Unmodified 1362.7408 0.74081919 681 P15170-3;P15170-2;P15170;Q8IYD1 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes no 0 0 0 1 By MS/MS 1 0 1 1 37.402 37.316 5 0.0016687 10926 20211116_3439_TMUAki_TMT10x_S_F1 71.176 52.343 453660 679900 5048.2 817420 403610 401620 453960 406710 462620 437210 568480 422440 634940 41615 817970 388570 434910 458110 414170 474010 425750 545110 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 453660 679900 5048.2 817420 403610 401620 453960 406710 462620 437210 568480 422440 634940 41615 817970 388570 434910 458110 414170 474010 425750 545110 1 1 1 1 1 1 1 1 1 1 1 35296000 0 35296000 10133 681 9416 53770 65098 65098 1 KHGLEVIYMIEPIDEYCVQQLK Oxidation (M) 2720.3554 0.35535974 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 1 1 By MS/MS By MS/MS 6.33 1.49 1 1 1 1 2 3 3 69.037 69.077 4 9.5411E-08 21321 20211116_3434_TMUAki_TMT10x_P_F6 96.633 86.211 29507000 53319000 103670 41856000 33045000 57824000 37641000 36510000 38903000 40271000 39044000 27470000 49710000 2037200 43749000 31771000 57444000 37980000 38309000 39527000 39175000 37660000 9 9 3 9 9 9 9 9 9 9 9 17125000 31656000 64417 22455000 17989000 41328000 20436000 23539000 24901000 26408000 23005000 15943000 29504000 1158900 23840000 17292000 40539000 20739000 24917000 25070000 25673000 22250000 5 5 2 5 5 5 5 5 5 5 5 12381000 21663000 39253 19401000 15056000 16496000 17205000 12971000 14002000 13863000 16040000 11527000 20206000 878350 19909000 14479000 16905000 17241000 13392000 14457000 13502000 15410000 4 4 1 4 4 4 4 4 4 4 4 9784900000 6910000000 2874900000 10134 544 9417 53771;53772;53773;53774;53775;53776 65099;65100;65101;65102;65103;65104;65105;65106;65107 65099 485 9 KHGLEVIYMIEPIDEYCVQQLK Unmodified 2704.3604 0.36044512 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 1 By MS/MS By MS/MS 7 1 1 1 1 1 76.295 76.238 4 1.5245E-07 24252 20211116_3434_TMUAki_TMT10x_P_F6 92.812 64.4 10579000 17939000 116970 15284000 12414000 16903000 14103000 7505300 7673800 9158300 12448000 9851300 16729000 1011300 15804000 11953000 16908000 14018000 8154600 8257500 8876300 11861000 3 3 2 3 3 3 3 3 3 3 3 6262900 10235000 103820 8687800 6706700 11360000 7886700 4978700 4815000 5528100 7023000 5832100 9544900 621710 9012300 6466600 11264000 7843000 5400500 5111200 5376400 6706500 2 2 1 2 2 2 2 2 2 2 2 4316500 7703200 13142 6596400 5707700 5542700 6216000 2526500 2858800 3630200 5425400 4019200 7183800 389600 6791800 5486300 5643700 6174700 2754100 3146300 3500000 5154300 1 1 1 1 1 1 1 1 1 1 1 1433800000 641540000 792270000 10135 544 9417 53777;53778 65108;65109;65110 65108 3 KHLEINPDHPIVETLR Unmodified 1910.0374 0.037395144 553 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 1 By MS/MS By MS/MS 6.2 1.03 4 7 19 17 4 16 35 34.886 35.093 2;3;4;5 3.8749E-90 9919 20211116_3434_TMUAki_TMT10x_P_F6 317.91 304.93 149760000 250670000 3252600 271540000 246220000 247580000 157860000 243620000 235140000 200550000 227090000 139460000 233980000 14681000 275190000 234020000 253610000 167130000 246600000 235540000 197650000 219320000 81 81 45 81 81 81 81 81 81 81 81 66628000 108260000 2151500 118730000 169180000 177640000 96519000 109210000 104070000 88509000 100910000 62052000 101060000 8447300 121260000 160510000 175800000 101940000 113870000 105430000 87296000 97440000 28 28 18 28 28 28 28 28 28 28 28 83134000 142400000 1101100 152820000 77037000 69943000 61336000 134400000 131070000 112040000 126180000 77411000 132920000 6233400 153920000 73514000 77814000 65196000 132730000 130120000 110350000 121880000 53 53 27 53 53 53 53 53 53 53 53 98450000000 64502000000 33948000000 10136 553 9418 53779;53780;53781;53782;53783;53784;53785;53786;53787;53788;53789;53790;53791;53792;53793;53794;53795;53796;53797;53798;53799;53800;53801;53802;53803;53804;53805;53806;53807;53808;53809;53810;53811;53812;53813;53814;53815;53816;53817;53818;53819;53820;53821;53822;53823;53824;53825;53826;53827;53828;53829 65111;65112;65113;65114;65115;65116;65117;65118;65119;65120;65121;65122;65123;65124;65125;65126;65127;65128;65129;65130;65131;65132;65133;65134;65135;65136;65137;65138;65139;65140;65141;65142;65143;65144;65145;65146;65147;65148;65149;65150;65151;65152;65153;65154;65155;65156;65157;65158;65159;65160;65161;65162;65163;65164;65165;65166;65167;65168;65169;65170;65171;65172;65173;65174;65175;65176;65177;65178;65179;65180;65181;65182;65183;65184;65185;65186;65187;65188;65189;65190;65191;65192;65193;65194 65132 84 KHLEINPDHSIIETLR Unmodified 1914.0323 0.032309766 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 1 By MS/MS By MS/MS 5.76 1.02 3 5 7 6 12 9 45.185 45.426 3;4;5 1.1178E-46 11532 20211116_3434_TMUAki_TMT10x_P_F6 239.7 208.74 67841000 106820000 614800 122090000 108400000 123560000 79236000 107780000 101860000 90366000 96570000 63168000 99733000 6093300 123500000 103220000 125430000 82598000 109860000 102440000 88974000 93321000 30 30 14 30 30 30 30 30 30 30 30 38219000 57412000 404310 65799000 77298000 96245000 53450000 63232000 60026000 51990000 53752000 35586000 53603000 3807000 66988000 73523000 95428000 55667000 65619000 60556000 51239000 52047000 16 16 7 16 16 16 16 16 16 16 16 29622000 49410000 210480 56296000 31107000 27316000 25786000 44549000 41830000 38377000 42817000 27582000 46131000 2286200 56512000 29700000 30002000 26931000 44240000 41887000 37735000 41274000 14 14 7 14 14 14 14 14 14 14 14 47530000000 30368000000 17161000000 10137 544 9419 53830;53831;53832;53833;53834;53835;53836;53837;53838;53839;53840;53841;53842;53843;53844;53845;53846;53847;53848;53849;53850 65195;65196;65197;65198;65199;65200;65201;65202;65203;65204;65205;65206;65207;65208;65209;65210;65211;65212;65213;65214;65215;65216;65217;65218;65219;65220;65221;65222;65223;65224 65204 30 KHPDADSLYVEEVDVGEIAPR Unmodified 2338.1441 0.14410464 1574 Q12904;Q12904-2 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.957 1 2 2 1 3 3 54.36 54.285 4 6.6743E-35 18871 20211116_3441_TMUAki_TMT10x_S_F3 184.6 162.73 26395000 43467000 198560 46986000 32510000 34449000 26308000 30057000 29403000 26885000 34218000 24577000 40573000 2364300 47498000 31022000 35769000 27105000 30686000 29948000 26388000 32859000 8 8 4 8 8 8 8 8 8 8 8 9723200 15296000 148430 16228000 16440000 21903000 11979000 12658000 13656000 11488000 13935000 9053700 14276000 950440 16574000 15654000 21755000 12436000 13302000 13830000 11268000 13434000 4 4 2 4 4 4 4 4 4 4 4 16672000 28172000 50126 30758000 16070000 12547000 14329000 17399000 15747000 15396000 20282000 15523000 26297000 1413900 30923000 15367000 14014000 14669000 17385000 16118000 15119000 19425000 4 4 2 4 4 4 4 4 4 4 4 6174400000 2971900000 3202500000 10138 1574 9420 53851;53852;53853;53854;53855;53856 65225;65226;65227;65228;65229;65230;65231 65229 7 KHPDASVNFSEFSK Unmodified 1591.7631 0.76307078 574 P09429 HMGB1 High mobility group protein B1 yes yes 0 0 0 1 By MS/MS By MS/MS 6.26 1.12 1 4 6 5 3 8 11 42.939 43.177 3;4;5 5.3701E-33 12906 20211116_3446_TMUAki_TMT10x_S_F7 220.27 118.96 48525000 74966000 1068800 94693000 77349000 80199000 50279000 72045000 68742000 65468000 71326000 45187000 70025000 5131400 94992000 73531000 82412000 52987000 73465000 69217000 64211000 68726000 20 20 16 20 20 20 20 20 20 20 20 21223000 33626000 664130 43059000 58949000 58634000 30122000 31107000 31308000 29713000 30807000 19765000 31412000 2848300 43494000 55835000 58153000 32098000 32975000 31781000 29077000 29734000 8 8 7 8 8 8 8 8 8 8 8 27301000 41340000 404670 51634000 18400000 21565000 20157000 40938000 37434000 35755000 40520000 25421000 38613000 2283200 51498000 17696000 24259000 20889000 40490000 37436000 35134000 38992000 12 12 9 12 12 12 12 12 12 12 12 22655000000 14894000000 7761000000 10139 574 9421 53857;53858;53859;53860;53861;53862;53863;53864;53865;53866;53867;53868;53869;53870;53871;53872;53873;53874;53875 65232;65233;65234;65235;65236;65237;65238;65239;65240;65241;65242;65243;65244;65245;65246;65247;65248;65249;65250;65251 65248 20 KHPDASVNFSEFSKK Unmodified 1719.858 0.8580338 574 P09429 HMGB1 High mobility group protein B1 yes yes 0 0 0 2 By MS/MS By MS/MS 5 3.24 4 1 2 5 6 6 39.59 39.692 3;4;5 9.9079E-34 9955 20211116_3447_TMUAki_TMT10x_S_F8 232.78 110.45 27766000 40240000 310990 53062000 49141000 41316000 28254000 51857000 41392000 39867000 44119000 25855000 37596000 2832300 53051000 46612000 43052000 30158000 51834000 41631000 39430000 42475000 13 13 9 13 13 13 13 13 13 13 13 8264800 11714000 95632 15008000 30184000 25694000 12668000 15502000 13410000 11908000 13536000 7696100 10942000 1081300 15238000 28507000 25287000 13788000 16168000 13615000 11778000 13054000 5 5 5 5 5 5 5 5 5 5 5 19501000 28526000 215360 38054000 18957000 15623000 15586000 36356000 27981000 27958000 30583000 18159000 26653000 1751000 37813000 18105000 17765000 16369000 35666000 28016000 27651000 29422000 8 8 4 8 8 8 8 8 8 8 8 19219000000 11886000000 7333400000 10140 574 9422 53876;53877;53878;53879;53880;53881;53882;53883;53884;53885;53886;53887 65252;65253;65254;65255;65256;65257;65258;65259;65260;65261;65262;65263 65262 12 KHPDSSVNFAEFSK Unmodified 1591.7631 0.76307078 817 P26583 HMGB2 High mobility group protein B2 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0.943 1 1 4 3 4 5 42.556 42.845 3;4 2.2928E-19 12511 20211116_3435_TMUAki_TMT10x_P_F7 175.08 109.12 14210000 22903000 74203 30194000 32845000 31302000 16830000 23124000 23688000 20701000 23349000 13232000 21398000 1479000 30305000 31093000 31636000 18121000 23851000 23787000 20317000 22534000 9 9 6 9 9 9 9 9 9 9 9 7700600 11407000 30399 16106000 27606000 25982000 12287000 12014000 12363000 11012000 12036000 7170000 10662000 916300 16247000 26085000 25546000 13267000 12890000 12562000 10796000 11621000 4 4 1 4 4 4 4 4 4 4 4 6509800 11496000 43804 14088000 5239000 5320200 4543100 11109000 11325000 9689100 11312000 6061600 10737000 562730 14058000 5008600 6090800 4854600 10961000 11224000 9521400 10913000 5 5 5 5 5 5 5 5 5 5 5 5413000000 1719700000 3693300000 10141 817 9423 53888;53889;53890;53891;53892;53893;53894;53895;53896 65264;65265;65266;65267;65268;65269;65270;65271;65272 65266 9 KHPDSSVNFAEFSKK Unmodified 1719.858 0.8580338 817 P26583 HMGB2 High mobility group protein B2 yes yes 0 0 0 2 By MS/MS By MS/MS 2.6 2.73 3 1 1 2 3 40.489 40.485 4;5 7.1579E-15 10253 20211116_3436_TMUAki_TMT10x_P_F8 158.64 61.223 2582500 3921200 14614 5743800 6093900 5102600 2924600 4388300 4628800 3512600 4417200 2404600 3665700 262430 5721300 5763400 5221700 3185000 4471600 4627000 3466700 4267700 4 4 2 4 4 4 4 4 4 4 4 924700 1439500 11800 2120300 4838100 3883000 1640900 1849600 1898600 1380200 1595000 861080 1345800 142470 2141300 4559400 3801300 1839600 1969100 1909500 1367300 1548000 1 1 1 1 1 1 1 1 1 1 1 1657800 2481700 2813.8 3623500 1255700 1219700 1283700 2538700 2730200 2132400 2822200 1543500 2320000 119960 3579900 1204000 1420400 1345400 2502500 2717500 2099400 2719600 3 3 1 3 3 3 3 3 3 3 3 3869900000 2020700000 1849200000 10142 817 9424 53897;53898;53899;53900;53901 65273;65274;65275;65276 65273 4 KHPNEICVPMSVEFEELLK Oxidation (M) 2314.1337 0.13373965 1572 Q12874 SF3A3 Splicing factor 3A subunit 3 yes yes 0 0 1 1 By MS/MS By MS/MS 7 0 2 1 1 62.465 63.051 4 4.9018E-06 21158 20211116_3446_TMUAki_TMT10x_S_F7 85.146 70.837 5621300 8398400 46326 8712700 6600000 9623200 6612800 7697900 7104600 6998300 7633600 5234200 7837700 499850 8879800 6330000 9704000 6722200 7903000 7225000 6863700 7347500 2 2 1 2 2 2 2 2 2 2 2 2990900 4412700 46326 5138500 3587700 6655000 3897600 4335500 3995400 3743600 4372400 2785200 4120200 299500 5213500 3450600 6634000 3940400 4507400 4073800 3680500 4206200 1 1 1 1 1 1 1 1 1 1 1 2630500 3985700 0 3574300 3012300 2968200 2715200 3362500 3109200 3254700 3261200 2449000 3717500 200350 3666300 2879400 3070100 2781900 3395600 3151200 3183200 3141200 1 1 0 1 1 1 1 1 1 1 1 1795800000 895590000 900190000 10143 1572 9425 53902;53903 65277;65278 65278 2117 2 KHPNEICVPMSVEFEELLK Unmodified 2298.1388 0.13882503 1572 Q12874 SF3A3 Splicing factor 3A subunit 3 yes yes 0 0 0 1 By MS/MS 5.5 0.5 1 1 2 71.115 71.076 4 0.047496 22530 20211116_3445_TMUAki_TMT10x_S_F6 36.856 22.395 8541200 13493000 0 14199000 9059100 8698000 9575400 6548400 7036800 9337100 10095000 7952600 12593000 706250 14353000 8698700 9152000 9607100 6849900 7378300 9004200 9643500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8541200 13493000 0 14199000 9059100 8698000 9575400 6548400 7036800 9337100 10095000 7952600 12593000 706250 14353000 8698700 9152000 9607100 6849900 7378300 9004200 9643500 1 1 0 1 1 1 1 1 1 1 1 889850000 0 889850000 10144 1572 9425 53904;53905 65279 65279 1 KHQALQAEIAGHEPR Unmodified 1683.8805 0.88050057 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 31.022 31.007 4 9.0301E-08 7040 20211116_3433_TMUAki_TMT10x_P_F5 120.59 104.36 182990 278380 353.18 259550 389870 341460 207350 180560 207250 148590 246290 170390 259690 18398 267340 369260 339190 219870 190750 212240 146440 236380 1 1 1 1 1 1 1 1 1 1 1 182990 278380 353.18 259550 389870 341460 207350 180560 207250 148590 246290 170390 259690 18398 267340 369260 339190 219870 190750 212240 146440 236380 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38947000 38947000 0 10145 1663 9426 53906;53907 65280 65280 1 KHQILEQAVEDYAETVHQLSK Unmodified 2465.2551 0.25505207 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS 8 0 1 1 68.595 68.697 4 0.031043 21677 20211116_3436_TMUAki_TMT10x_P_F8 39.659 26.73 6099000 10111000 91716 8987300 4733000 10401000 6738000 5264700 5615500 6011700 6453300 5679500 9430400 572000 9269100 4594200 10394000 6695000 5634400 5791600 5840600 6199300 1 1 1 1 1 1 1 1 1 1 1 6099000 10111000 91716 8987300 4733000 10401000 6738000 5264700 5615500 6011700 6453300 5679500 9430400 572000 9269100 4594200 10394000 6695000 5634400 5791600 5840600 6199300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1648900000 1648900000 0 10146 1475 9427 53908 65281 65281 1 KHSMLFIEASAK Oxidation (M) 1376.7122 0.71222118 2880 Q9NP72;Q9NP72-2;Q9NP72-3 RAB18 Ras-related protein Rab-18 yes no 0 0 1 1 By MS/MS 1 0 1 1 37.579 37.493 4 0.00010993 10988 20211116_3439_TMUAki_TMT10x_S_F1 93.958 77.274 395940 694480 0 672890 466380 400170 413560 561860 583620 475390 567810 368630 647940 29703 683910 445590 428120 427520 560510 585730 467850 548230 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 395940 694480 0 672890 466380 400170 413560 561860 583620 475390 567810 368630 647940 29703 683910 445590 428120 427520 560510 585730 467850 548230 1 1 0 1 1 1 1 1 1 1 1 27675000 0 27675000 10147 2880 9428 53909 65282 65282 2999 1 KHSQFIGYPITLFVEK Unmodified 1906.0353 0.035269879 544 P07900;P07900-2;Q58FG0 HSP90AA1;HSP90AA5P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 yes no 0 0 0 1 By MS/MS By MS/MS 3.62 0.857 1 2 4 1 3 5 58.857 58.706 3;4 2.7994E-21 21108 20211116_3431_TMUAki_TMT10x_P_F4 166.9 131.6 77014000 121310000 708100 118490000 90045000 108620000 84298000 64718000 64347000 70034000 86510000 71709000 113180000 6718200 120930000 86205000 110280000 85190000 68176000 67122000 68180000 82767000 11 11 5 11 11 11 11 11 11 11 11 41751000 64407000 215420 63990000 43947000 72519000 45170000 36695000 36514000 37642000 45998000 38873000 60097000 3397700 65438000 42163000 72547000 45486000 39145000 37862000 36724000 44079000 6 6 3 6 6 6 6 6 6 6 6 35263000 56899000 492680 54495000 46098000 36100000 39128000 28023000 27833000 32392000 40513000 32836000 53083000 3320500 55489000 44042000 37730000 39704000 29030000 29260000 31455000 38689000 5 5 2 5 5 5 5 5 5 5 5 12039000000 5391500000 6647600000 10148 544 9429 53910;53911;53912;53913;53914;53915;53916;53917 65283;65284;65285;65286;65287;65288;65289;65290;65291;65292;65293 65286 11 KHSQFIGYPITLYLEK Unmodified 1936.0458 0.045834566 553 P08238;Q58FF7 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 0 0 0 1 By MS/MS By MS/MS 3.09 0.793 3 4 4 6 5 65.209 64.98 3;4 4.6821E-15 23270 20211116_3441_TMUAki_TMT10x_S_F3 145.1 124.72 142940000 244810000 1418400 236290000 183630000 248540000 173680000 153140000 148800000 143470000 165660000 133100000 228400000 12886000 241840000 175860000 250300000 175920000 160230000 153070000 140520000 159280000 17 17 10 17 17 17 17 17 17 17 17 104400000 179200000 791610 173650000 128670000 213680000 135690000 112570000 110740000 103280000 121040000 97204000 167190000 9043200 178140000 123550000 212940000 136490000 119280000 114120000 101250000 116440000 12 12 6 12 12 12 12 12 12 12 12 38545000 65608000 626820 62642000 54966000 34859000 37996000 40570000 38063000 40188000 44616000 35893000 61208000 3842900 63699000 52305000 37354000 39430000 40949000 38952000 39266000 42837000 5 5 4 5 5 5 5 5 5 5 5 32899000000 19835000000 13064000000 10149 553 9430 53918;53919;53920;53921;53922;53923;53924;53925;53926;53927;53928 65294;65295;65296;65297;65298;65299;65300;65301;65302;65303;65304;65305;65306;65307;65308;65309;65310;65311;65312 65307 19 KHVLFGTVGVPEHTYR Unmodified 1838.9792 0.97915198 487 P04216 THY1 Thy-1 membrane glycoprotein yes yes 0 0 0 1 By matching By MS/MS 2.33 0.471 2 1 1 2 40.032 39.874 5 9.0325E-05 12986 20211116_3441_TMUAki_TMT10x_S_F3 81.148 66.587 956340 1498900 0 1600500 927120 841640 948170 1158700 1167500 1099000 1328900 890380 1399000 69817 1614300 888900 911340 967450 1160300 1183800 1075800 1276900 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 956340 1498900 0 1600500 927120 841640 948170 1158700 1167500 1099000 1328900 890380 1399000 69817 1614300 888900 911340 967450 1160300 1183800 1075800 1276900 2 2 0 2 2 2 2 2 2 2 2 119240000 61390000 57851000 10150 487 9431 53929;53930;53931 65313;65314 65314 2 KIAFAITAIK Unmodified 1074.6801 0.68011642 1345 P62269 RPS18 40S ribosomal protein S18 yes yes 0 0 0 1 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 60.499 60.573 3 2.845E-09 17780 20211116_3434_TMUAki_TMT10x_P_F6 143.97 86.479 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10151 1345 9432 53932;53933;53934 65315;65316;65317 65316 3 KICAVGITK Unmodified 988.57394 0.57393679 1234 P55060;P55060-3;P55060-4 CSE1L Exportin-2 yes no 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 41.243 41.068 3 0.0014339 13460 20211116_3441_TMUAki_TMT10x_S_F3 77.64 25.714 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10152 1234 9433 53935;53936;53937 65318;65319;65320 65320 3 KICLDQQNPLYK Unmodified 1518.7864 0.78644876 39 CON__P02777 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 51.454 51.318 3 2.5292E-05 16619 20211116_3439_TMUAki_TMT10x_S_F1 91.858 58.663 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10153 39 9434 53938;53939 65321;65322 65322 2 KICLDQQNPLYKK Unmodified 1646.8814 0.88141177 39 CON__P02777 yes yes 0 0 0 2 By matching By MS/MS 3 0 2 1 1 47.78 47.594 4 0.0028737 16137 20211116_3441_TMUAki_TMT10x_S_F3 70.68 59.735 + 1501300 2362400 1702.2 2990700 1241400 1531200 1248400 2339000 2670700 2000700 2562100 1397900 2206700 122420 2984800 1190600 1668000 1309900 2327200 2650800 1967900 2474900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1501300 2362400 1702.2 2990700 1241400 1531200 1248400 2339000 2670700 2000700 2562100 1397900 2206700 122420 2984800 1190600 1668000 1309900 2327200 2650800 1967900 2474900 1 1 1 1 1 1 1 1 1 1 1 247750000 176460000 71293000 10154 39 9435 53940;53941 65323 65323 1 KICYQEVSQCFGVLSSR Unmodified 2059.9819 0.98193045 1847 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.6 0.49 2 3 2 3 60.804 60.478 3;4 2.3938E-43 21474 20211116_3441_TMUAki_TMT10x_S_F3 232.15 220.46 100090000 177450000 993280 164950000 120230000 142910000 115040000 99334000 83530000 101650000 127510000 93193000 165540000 8665400 168830000 115150000 145970000 115980000 103260000 87917000 99180000 121640000 16 16 9 16 16 16 16 16 16 16 16 41349000 69638000 265980 65319000 48690000 82342000 54051000 39329000 33391000 40730000 49889000 38500000 64963000 3464500 67196000 46817000 81868000 53907000 42200000 35459000 39721000 47615000 6 6 3 6 6 6 6 6 6 6 6 58739000 107820000 727310 99634000 71536000 60569000 60984000 60005000 50140000 60918000 77617000 54693000 100570000 5201000 101640000 68337000 64101000 62075000 61064000 52458000 59459000 74024000 10 10 6 10 10 10 10 10 10 10 10 9755000000 4593600000 5161500000 10155 1847 9436 53942;53943;53944;53945;53946 65324;65325;65326;65327;65328;65329;65330;65331;65332;65333;65334;65335;65336;65337;65338;65339 65337 16 KIDFLTK Unmodified 863.51165 0.5116541 2576 Q99471;Q99471-3 PFDN5 Prefoldin subunit 5 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 1 1 1 1 51.567 51.47 3 0.0063188 16680 20211116_3439_TMUAki_TMT10x_S_F1 85.731 39.305 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10156 2576 9437 53947;53948 65340;65341 65341 2 KIDGLLIDQIQR Unmodified 1410.8195 0.81946344 1439 P82650 MRPS22 28S ribosomal protein S22, mitochondrial yes yes 0 0 0 1 By MS/MS 7 0 1 1 57.47 58.204 3 0.043495 18638 20211116_3435_TMUAki_TMT10x_P_F7 45.864 21.877 7626900 11468000 40104 13688000 9046000 10940000 8032300 5676700 5233000 5552900 7548200 7101700 10709000 689580 13766000 8650700 11196000 8113900 6033600 5528300 5428400 7209800 1 1 1 1 1 1 1 1 1 1 1 7626900 11468000 40104 13688000 9046000 10940000 8032300 5676700 5233000 5552900 7548200 7101700 10709000 689580 13766000 8650700 11196000 8113900 6033600 5528300 5428400 7209800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 308340000 308340000 0 10157 1439 9438 53949 65342 65342 1 KIDGQQTIIACIESHQFQAK Unmodified 2314.174 0.17396498 1062 P47755 CAPZA2 F-actin-capping protein subunit alpha-2 yes yes 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 68.882 68.952 4 7.3517E-13 18348 20211116_3436_TMUAki_TMT10x_P_F8 127.32 112.06 20658000 30028000 239120 31000000 23530000 28766000 20170000 19090000 16273000 18850000 23601000 19236000 28023000 1530400 31523000 22492000 29225000 20514000 19890000 16986000 18420000 22540000 4 4 3 4 4 4 4 4 4 4 4 14802000 21349000 201900 20936000 16405000 23107000 13903000 12481000 11052000 13086000 16668000 13784000 19919000 1437800 21420000 15679000 23167000 14145000 13244000 11568000 12756000 15905000 2 2 2 2 2 2 2 2 2 2 2 5856000 8679400 37218 10063000 7125100 5658300 6266800 6609400 5221000 5763900 6932600 5452800 8104000 92624 10103000 6812600 6057400 6369200 6646700 5417900 5664100 6634700 2 2 1 2 2 2 2 2 2 2 2 3391800000 1898600000 1493200000 10158 1062 9439 53950;53951;53952 65343;65344;65345;65346 65343 4 KIDKYTEVLK Unmodified 1235.7125 0.71253876 983 P40429 RPL13A 60S ribosomal protein L13a yes yes 0 0 0 2 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 45.968 45.917 4 0.00023197 12433 20211116_3436_TMUAki_TMT10x_P_F8 114.76 76.575 18803000 29844000 23860 25999000 37607000 30315000 22344000 28339000 30573000 22915000 28879000 17503000 27833000 1361100 26859000 35646000 30572000 23717000 28750000 30683000 22603000 27911000 5 5 1 5 5 5 5 5 5 5 5 7649100 11819000 0 11302000 25362000 19364000 10369000 10762000 11562000 8991900 11049000 7119500 11026000 562010 11687000 23920000 19037000 11339000 11323000 11692000 8854900 10674000 2 2 0 2 2 2 2 2 2 2 2 11153000 18025000 23860 14697000 12245000 10951000 11974000 17577000 19011000 13923000 17830000 10384000 16807000 799110 15172000 11725000 11536000 12378000 17427000 18991000 13748000 17237000 3 3 1 3 3 3 3 3 3 3 3 992370000 520050000 472320000 10159 983 9440 53953;53954;53955 65347;65348;65349;65350;65351 65348 5 KIDYFER Unmodified 969.49198 0.4919813 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 1 By MS/MS By MS/MS 5.2 0.748 1 2 2 2 3 39.656 39.759 3 0.028592 10709 20211116_3433_TMUAki_TMT10x_P_F5 68.846 36.034 7198000 10089000 7772.6 13379000 16837000 10558000 8052300 7706100 8776200 6498400 10187000 6701800 9426400 705300 13374000 15921000 10865000 8649500 7942800 8946700 6396500 9783500 6 6 1 6 6 6 6 6 6 6 6 4034400 5457700 0 7328000 13685000 8080900 4971500 4107800 4713400 3492800 5426200 3756300 5099600 447990 7355000 12901000 8096500 5490400 4358600 4831700 3436600 5212400 2 2 0 2 2 2 2 2 2 2 2 3163600 4631300 7772.6 6050700 3152000 2476700 3080800 3598400 4062800 3005600 4760900 2945500 4326800 257310 6019000 3020100 2768800 3159100 3584200 4115000 2959900 4571100 4 4 1 4 4 4 4 4 4 4 4 457260000 276520000 180740000 10160 1684 9441 53956;53957;53958;53959;53960 65352;65353;65354;65355;65356 65352 5 KIEAEIVR Unmodified 956.56548 0.56548059 433 O95470 SGPL1 Sphingosine-1-phosphate lyase 1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 36.033 36.135 3 0.0037923 7888 20211116_3444_TMUAki_TMT10x_S_F5 91.584 36.017 2057900 3097700 13545 3150800 2922000 3035200 2363800 2110500 1833100 1979000 2531000 1916200 2890700 195340 3208800 2788500 3078400 2410400 2188600 1912800 1938200 2420000 2 2 2 2 2 2 2 2 2 2 2 1314500 1931900 5691.1 1947000 2084500 2322800 1465600 1320200 1176800 1229400 1585300 1224000 1802700 125070 1990800 1983500 2320600 1510000 1390100 1224300 1204500 1516600 1 1 1 1 1 1 1 1 1 1 1 743390 1165800 7853.9 1203800 837540 712410 898170 790370 656270 749580 945710 692230 1088000 70270 1218000 805070 757810 900390 798440 688500 733760 903340 1 1 1 1 1 1 1 1 1 1 1 149520000 103310000 46215000 10161 433 9442 53961;53962 65357;65358 65358 2 KIEDNNTLVFIVDVK Unmodified 1745.9564 0.95635086 1364 P62750 RPL23A 60S ribosomal protein L23a yes yes 0 0 0 1 By MS/MS By matching 4.5 0.5 1 1 1 1 70.733 70.771 3 4.7696E-05 22899 20211116_3431_TMUAki_TMT10x_P_F4 95.067 73.816 7617600 12551000 117640 10805000 8119100 15881000 9104500 9505400 9759100 9691600 9551000 7093600 11705000 742360 11222000 7816500 15722000 9203800 9991700 9892200 9457600 9219900 2 2 1 2 2 2 2 2 2 2 2 7617600 12551000 117640 10805000 8119100 15881000 9104500 9505400 9759100 9691600 9551000 7093600 11705000 742360 11222000 7816500 15722000 9203800 9991700 9892200 9457600 9219900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 713450000 324780000 388670000 10162 1364 9443 53963;53964 65359;65360 65359 2 KIEEAMDGSETPQLFTVLPEK Oxidation (M) 2377.1723 0.17229323 1633 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 1 1 By MS/MS 4.5 0.5 1 1 2 67.15 67.08 4 1.0401E-05 20554 20211116_3444_TMUAki_TMT10x_S_F5 80.752 69.307 5986000 9610800 58283 10404000 6981700 6237300 6888800 6120600 6401900 6561900 7812800 5573200 8970900 469990 10496000 6689400 6608600 6977400 6242100 6584200 6390500 7493000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5986000 9610800 58283 10404000 6981700 6237300 6888800 6120600 6401900 6561900 7812800 5573200 8970900 469990 10496000 6689400 6608600 6977400 6242100 6584200 6390500 7493000 2 2 1 2 2 2 2 2 2 2 2 1182800000 0 1182800000 10163 1633 9444 53965;53966 65361;65362 65362 2189 2 KIEEIKDFLLTAR Unmodified 1574.9032 0.90319307 1401 P63173 RPL38 60S ribosomal protein L38 yes yes 0 0 0 2 By MS/MS By MS/MS 3.39 2.45 4 4 6 1 3 9 9 68.442 68.375 3;4 6.1222E-19 27745 20211116_3441_TMUAki_TMT10x_S_F3 185.12 174.08 145440000 271080000 1805100 178490000 211920000 357770000 215100000 268620000 261010000 254050000 229080000 135430000 252600000 13764000 191310000 203380000 351410000 219440000 277170000 262390000 248720000 221970000 24 24 17 24 24 24 24 24 24 24 24 95262000 172260000 817860 114100000 153820000 288570000 160490000 173960000 170400000 164260000 148750000 88703000 160520000 8667100 123120000 147700000 280640000 162750000 182360000 172160000 160820000 144160000 13 13 11 13 13 13 13 13 13 13 13 50182000 98827000 987210 64383000 58100000 69199000 54611000 94659000 90605000 89794000 80328000 46731000 92087000 5096900 68186000 55675000 70770000 56691000 94812000 90236000 87898000 77807000 11 11 6 11 11 11 11 11 11 11 11 34795000000 21396000000 13399000000 10164 1401 9445 53967;53968;53969;53970;53971;53972;53973;53974;53975;53976;53977;53978;53979;53980;53981;53982;53983;53984 65363;65364;65365;65366;65367;65368;65369;65370;65371;65372;65373;65374;65375;65376;65377;65378;65379;65380;65381;65382;65383;65384;65385;65386 65384 24 KIEEQLTLEK Unmodified 1229.6867 0.68671794 878 P30740;P30740-2 SERPINB1 Leukocyte elastase inhibitor yes no 0 0 0 1 By MS/MS 5 0 1 1 47.873 48.046 3 0.023667 12736 20211116_3444_TMUAki_TMT10x_S_F5 60.161 31.984 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10165 878 9446 53985 65387 65387 1 KIEFPLPDEK Unmodified 1214.6547 0.65468953 1336 P62191;P62191-2 PSMC1 26S protease regulatory subunit 4 yes no 0 0 0 1 By MS/MS 6 0 1 1 56.756 56.835 3 2.0298E-05 16244 20211116_3434_TMUAki_TMT10x_P_F6 101.39 73.726 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10166 1336 9447 53986 65388 65388 1 KIEFPLPDRR Unmodified 1269.7194 0.71935547 1032 P43686;P43686-2 PSMC4 26S protease regulatory subunit 6B yes no 0 0 0 2 By MS/MS By MS/MS 4 3.29 2 1 2 2 3 43.473 43.474 4 0.00031293 11587 20211116_3440_TMUAki_TMT10x_S_F2 110.93 62.928 27779000 42252000 0 44460000 32177000 31684000 31708000 21154000 25020000 23267000 32420000 25860000 39434000 1786500 45010000 30804000 32829000 31980000 22103000 26009000 22637000 31045000 5 5 0 5 5 5 5 5 5 5 5 9851900 14458000 0 15528000 16829000 16904000 10483000 7806100 8810400 8390400 11097000 9171100 13495000 665530 15786000 15960000 16931000 10913000 8413300 9117300 8170400 10634000 2 2 0 2 2 2 2 2 2 2 2 17927000 27794000 0 28933000 15349000 14780000 21225000 13348000 16210000 14877000 21323000 16689000 25939000 1121000 29224000 14843000 15898000 21067000 13689000 16892000 14467000 20412000 3 3 0 3 3 3 3 3 3 3 3 643100000 421560000 221540000 10167 1032 9448 53987;53988;53989;53990;53991 65389;65390;65391 65391 3 KIEFPMPNEEAR Oxidation (M) 1475.7079 0.70786408 711 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 1 1 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 43.368 43.464 3 0.0043729 11995 20211116_3433_TMUAki_TMT10x_P_F5 62.162 49.181 9987300 16385000 262640 20349000 22356000 22949000 13546000 19584000 19440000 15381000 17088000 9301100 15303000 1246000 20518000 21230000 23143000 14384000 19955000 19435000 15195000 16557000 6 6 6 6 6 6 6 6 6 6 6 6639000 10627000 201850 13444000 19492000 19971000 11006000 12848000 12863000 9936500 11089000 6183100 9926500 918550 13614000 18488000 19782000 11665000 13335000 12942000 9824400 10752000 4 4 4 4 4 4 4 4 4 4 4 3348300 5757800 60790 6904300 2864100 2978400 2540900 6735700 6576600 5444200 5999000 3118100 5376900 327470 6903800 2741800 3360800 2719200 6620100 6493500 5370300 5804900 2 2 2 2 2 2 2 2 2 2 2 815080000 638830000 176260000 10168 711 9449 53992;53993;53994 65392;65393;65394;65395;65396;65397 65393 799 6 KIEFPMPNEEAR Unmodified 1459.7129 0.71294946 711 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 50.264 50.364 3 0.000288 13584 20211116_3434_TMUAki_TMT10x_P_F6 84.946 67.28 2170800 3979100 52668 4343300 5008100 5160900 3407800 2720100 2119300 2341100 3211200 2021600 3714200 268800 4417400 4765000 5152300 3500500 2877400 2251200 2302100 3063900 1 1 1 1 1 1 1 1 1 1 1 2170800 3979100 52668 4343300 5008100 5160900 3407800 2720100 2119300 2341100 3211200 2021600 3714200 268800 4417400 4765000 5152300 3500500 2877400 2251200 2302100 3063900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 189970000 189970000 0 10169 711 9449 53995;53996 65398;65399 65398 2 KIEFSLPDLEGR Unmodified 1402.7456 0.7456298 945 P35998;P35998-2 PSMC2 26S protease regulatory subunit 7 yes no 0 0 0 1 By MS/MS By MS/MS 6 0.894 2 1 2 3 2 64.512 64.766 3 5.2898E-09 21851 20211116_3446_TMUAki_TMT10x_S_F7 148.52 123.3 44080000 74011000 495790 74167000 53256000 77727000 44494000 54496000 43685000 50386000 56817000 41044000 69061000 3927700 75705000 50853000 78441000 45547000 56457000 44854000 49379000 54402000 6 6 3 6 6 6 5 6 5 6 6 23490000 38217000 495790 38746000 26961000 56157000 21849000 29528000 21846000 26254000 28999000 21875000 35663000 2431700 39750000 25751000 55537000 22412000 31268000 22389000 25776000 27753000 4 4 3 4 4 4 3 4 3 4 4 20590000 35794000 0 35421000 26295000 21570000 22645000 24968000 21839000 24133000 27817000 19169000 33398000 1496100 35955000 25102000 22905000 23135000 25189000 22465000 23604000 26649000 2 2 0 2 2 2 2 2 2 2 2 5124300000 3227800000 1896400000 10170 945 9450 53997;53998;53999;54000;54001 65400;65401;65402;65403;65404;65405 65405 6 KIENLCAMGFDR Unmodified 1452.6854 0.6853545 1293 P61086;P61086-2 UBE2K Ubiquitin-conjugating enzyme E2 K yes no 0 0 0 1 By MS/MS 7 0 1 1 50.802 51.475 3 0.011471 15948 20211116_3435_TMUAki_TMT10x_P_F7 59.997 44.056 10631000 17250000 124380 20901000 24280000 24122000 17167000 12070000 11517000 11048000 14514000 9899600 16110000 1188500 21113000 23109000 24105000 17611000 12850000 12070000 10832000 13908000 2 2 2 2 2 2 2 2 2 2 2 10631000 17250000 124380 20901000 24280000 24122000 17167000 12070000 11517000 11048000 14514000 9899600 16110000 1188500 21113000 23109000 24105000 17611000 12850000 12070000 10832000 13908000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 602510000 602510000 0 10171 1293 9451 54002 65406;65407 65407 2 KIENVPTGPNNKPK Unmodified 1534.8467 0.84674083 217 O43447;O43447-2 PPIH Peptidyl-prolyl cis-trans isomerase H yes no 0 0 0 2 By matching By MS/MS 1 0 2 1 1 34.354 34.349 4 0.00088668 9688 20211116_3439_TMUAki_TMT10x_S_F1 79.022 60.657 257790 452890 2338.8 422790 247970 240110 295660 313480 337790 304670 363990 240040 422480 23415 430710 239110 257530 298710 314760 342730 297920 350320 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 257790 452890 2338.8 422790 247970 240110 295660 313480 337790 304670 363990 240040 422480 23415 430710 239110 257530 298710 314760 342730 297920 350320 1 1 1 1 1 1 1 1 1 1 1 48768000 27874000 20894000 10172 217 9452 54003;54004 65408 65408 1 KIEPELDGSAQVTSHDASTNGLINFIK Unmodified 2883.4614 0.46141603 522 P06744;P06744-2 GPI Glucose-6-phosphate isomerase yes no 0 0 0 1 By MS/MS By MS/MS 6.2 0.748 1 2 2 2 3 65.875 66.073 4 1.0942E-92 20009 20211116_3434_TMUAki_TMT10x_P_F6 264.97 257.25 53946000 91692000 344910 92130000 60550000 68248000 52329000 55256000 52590000 54534000 65624000 50224000 85560000 3988200 93600000 57814000 70707000 53518000 56814000 53952000 53291000 62901000 10 10 4 10 10 10 10 10 10 10 10 16886000 27261000 139190 26812000 15099000 30273000 16876000 15855000 15575000 15829000 18471000 15723000 25436000 1331000 27436000 14519000 30302000 16985000 16847000 16005000 15460000 17728000 4 4 2 4 4 4 4 4 4 4 4 37059000 64431000 205720 65318000 45451000 37975000 35453000 39401000 37014000 38706000 47153000 34502000 60124000 2657100 66164000 43295000 40405000 36533000 39967000 37947000 37831000 45173000 6 6 2 6 6 6 6 6 6 6 6 16403000000 7779400000 8623200000 10173 522 9453 54005;54006;54007;54008;54009 65409;65410;65411;65412;65413;65414;65415;65416;65417;65418 65409 10 KIEPELDGSSPVTSHDSSTNGLINFIK Unmodified 2884.4454 0.44543162 55 CON__Q3ZBD7 yes yes 0 0 0 1 By MS/MS 6 0.816 1 1 1 3 67.64 67.742 4 1.0859E-05 21125 20211116_3445_TMUAki_TMT10x_S_F6 65.071 53.33 + 21551000 34273000 246390 32753000 26028000 20805000 23908000 19157000 18696000 19936000 26233000 20067000 31974000 1951600 33342000 24910000 21894000 24200000 19584000 19515000 19439000 25073000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21551000 34273000 246390 32753000 26028000 20805000 23908000 19157000 18696000 19936000 26233000 20067000 31974000 1951600 33342000 24910000 21894000 24200000 19584000 19515000 19439000 25073000 3 3 1 3 3 3 3 3 3 3 3 3840300000 0 3840300000 10174 55 9454 54010;54011;54012 65419;65420;65421 65420 3 KIEPFYK Unmodified 923.51165 0.5116541 1563 Q12788 TBL3 Transducin beta-like protein 3 yes yes 0 0 0 1 By matching By MS/MS 8 0 2 1 1 45.2 45.247 3 0.044248 11712 20211116_3447_TMUAki_TMT10x_S_F8 59.35 18.321 2299400 4125400 65612 4436300 2631100 2172000 2398000 3548700 3506700 3208700 3803500 2141400 3850600 256430 4469900 2520900 2383300 2478900 3528400 3529500 3147700 3659900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2299400 4125400 65612 4436300 2631100 2172000 2398000 3548700 3506700 3208700 3803500 2141400 3850600 256430 4469900 2520900 2383300 2478900 3528400 3529500 3147700 3659900 1 1 1 1 1 1 1 1 1 1 1 138400000 41395000 97007000 10175 1563 9455 54013;54014 65422 65422 1 KIEVIKPGDLGVDLTSK Unmodified 1811.0404 0.040414837 968 P38117;P38117-2 ETFB Electron transfer flavoprotein subunit beta yes no 0 0 0 2 By MS/MS By matching 8 0 2 1 1 61.5 61.596 4 5.2735E-11 18800 20211116_3436_TMUAki_TMT10x_P_F8 135.04 114 6946100 10266000 0 11700000 9171500 11736000 7203000 6287000 5881800 5624900 7425600 6467400 9584900 603470 11836000 8744300 11831000 7368300 6647400 6096300 5520800 7115400 1 1 0 1 1 1 1 1 1 1 1 6946100 10266000 0 11700000 9171500 11736000 7203000 6287000 5881800 5624900 7425600 6467400 9584900 603470 11836000 8744300 11831000 7368300 6647400 6096300 5520800 7115400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1816400000 843440000 973000000 10176 968 9456 54015;54016 65423 65423 1 KIFDIDEAEEGVK Unmodified 1491.7457 0.74568938 738 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 0 0 0 1 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 58.462 58.366 3 1.4053E-14 18285 20211116_3442_TMUAki_TMT10x_S_F4 165.86 115.19 29363000 47013000 329920 56170000 43530000 46648000 31412000 34008000 39948000 34585000 40115000 27342000 43902000 2857700 56513000 41448000 47826000 32761000 35232000 40273000 33754000 38692000 7 7 5 7 7 7 7 7 7 7 7 15464000 24517000 235420 28785000 32356000 37619000 23044000 18100000 21015000 17633000 20201000 14400000 22892000 1676500 29196000 30800000 37340000 23799000 19374000 21439000 17240000 19513000 4 4 3 4 4 4 4 4 4 4 4 13899000 22496000 94496 27385000 11174000 9029700 8368500 15908000 18933000 16952000 19914000 12942000 21009000 1181200 27317000 10648000 10486000 8962200 15858000 18833000 16514000 19180000 3 3 2 3 3 3 3 3 3 3 3 2810100000 1403200000 1406900000 10177 738 9457 54017;54018;54019;54020;54021 65424;65425;65426;65427;65428;65429;65430 65429 7 KIFTFAEK Unmodified 982.54877 0.54876789 1219 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 53.02 52.875 3 0.0013115 16762 20211116_3429_TMUAki_TMT10x_P_F2 111.06 79.123 10671000 16858000 149330 18466000 26737000 23406000 14411000 17117000 17118000 14800000 17817000 9936900 15737000 1248900 18799000 25336000 23398000 15346000 17652000 17321000 14550000 17166000 3 3 3 3 3 3 3 3 3 3 3 6207800 9935300 47543 10595000 22020000 19986000 10084000 10935000 10700000 9327400 10602000 5780500 9273200 780440 10902000 20817000 19578000 10872000 11527000 10855000 9175900 10230000 2 2 2 2 2 2 2 2 2 2 2 4463100 6923100 101790 7871300 4716800 3419900 4326900 6182500 6418000 5472700 7215400 4156400 6463500 468440 7896500 4519100 3820600 4474000 6125300 6466000 5374200 6935800 1 1 1 1 1 1 1 1 1 1 1 1146300000 999340000 146980000 10178 1219 9458 54022;54023;54024 65431;65432;65433 65432 3 KIFVGGIKEDTEEYNLR Unmodified 2010.0422 0.042205751 1168;1169 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 0 2 By MS/MS By MS/MS 6.67 1.05 2 1 4 2 4 5 53.311 53.616 3;4 3.7727E-39 17325 20211116_3446_TMUAki_TMT10x_S_F7 184.8 172.49 111970000 199120000 1159700 199780000 194310000 240840000 145300000 151380000 152170000 149250000 160590000 104250000 185800000 10457000 204380000 185080000 240810000 150160000 158360000 154810000 145850000 154650000 11 11 6 11 11 11 11 11 11 11 10 75915000 133250000 1060100 134470000 162930000 205510000 112480000 101300000 107670000 101780000 110600000 70690000 124340000 8148100 138160000 155000000 202640000 116580000 108270000 109850000 99383000 106600000 7 7 4 7 7 7 7 7 7 7 7 36051000 65875000 99622 65310000 31379000 35331000 32824000 50079000 44501000 47469000 49994000 33562000 61466000 2308800 66219000 30084000 38174000 33580000 50094000 44956000 46468000 48050000 4 4 2 4 4 4 4 4 4 4 3 14074000000 6800200000 7273900000 10179 1168;1169 9459 54025;54026;54027;54028;54029;54030;54031;54032;54033 65434;65435;65436;65437;65438;65439;65440;65441;65442;65443;65444;65445 65445 12 KIFVGGLNPEATEEK Unmodified 1630.8566 0.85663681 2601 Q99729-3;Q99729-2 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 0 0 0 1 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 53.206 53.531 3 3.2929E-19 16668 20211116_3435_TMUAki_TMT10x_P_F7 163.99 140.16 41042000 68503000 147810 81492000 62228000 54680000 38245000 35330000 48582000 41335000 53689000 38214000 63969000 3727500 81817000 59066000 56923000 40368000 37077000 49153000 40122000 51634000 8 8 3 8 8 8 8 8 8 8 8 19152000 31934000 82675 38150000 46418000 42355000 26039000 16648000 22843000 19867000 24533000 17833000 29821000 1947400 38543000 43994000 42311000 27379000 18320000 23439000 19271000 23614000 4 4 1 4 4 4 4 4 4 4 4 21890000 36569000 65132 43343000 15810000 12325000 12206000 18682000 25739000 21468000 29156000 20382000 34148000 1780100 43274000 15072000 14612000 12989000 18757000 25714000 20852000 28020000 4 4 2 4 4 4 4 4 4 4 4 4829200000 3221600000 1607600000 10180 2601 9460 54034;54035;54036;54037;54038;54039 65446;65447;65448;65449;65450;65451;65452;65453;65454 65449 9 KIFVGGLSPDTPEEK Unmodified 1615.8457 0.84573777 1675 Q14103;Q14103-3;Q14103-4;Q14103-2 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes no 0 0 0 1 By MS/MS By MS/MS 6.5 1.12 2 2 2 2 4 4 53.533 53.761 3 3.5354E-15 14937 20211116_3434_TMUAki_TMT10x_P_F6 159.18 141.96 74668000 124640000 731580 142430000 102660000 93350000 70653000 68837000 92647000 78533000 100910000 69526000 116370000 6903100 143310000 97653000 97575000 74021000 71516000 93583000 76300000 97089000 13 13 8 13 13 13 13 13 13 13 13 27101000 43876000 187410 50667000 68925000 63880000 41090000 24628000 33390000 28171000 35743000 25234000 40966000 2846900 51407000 65390000 63380000 42897000 27127000 34389000 27367000 34407000 5 5 2 5 5 5 5 5 5 5 5 47567000 80767000 544170 91761000 33736000 29470000 29563000 44209000 59257000 50362000 65167000 44292000 75405000 4056200 91903000 32263000 34195000 31125000 44389000 59194000 48933000 62682000 8 8 6 8 8 8 8 8 8 8 8 9538500000 5214600000 4323900000 10181 1675 9461 54040;54041;54042;54043;54044;54045;54046;54047 65455;65456;65457;65458;65459;65460;65461;65462;65463;65464;65465;65466;65467 65456 13 KIFVGTK Unmodified 791.49052 0.49052473 1362 P62701 RPS4X 40S ribosomal protein S4, X isoform yes yes 0 0 0 1 By MS/MS By MS/MS 2.88 0.599 2 5 1 5 3 38.404 38.374 3 0.0024284 13102 20211116_3441_TMUAki_TMT10x_S_F3 109.21 60.711 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10182 1362 9462 54048;54049;54050;54051;54052;54053;54054;54055 65468;65469;65470;65471;65472;65473;65474;65475 65474 8 KIGDEYFTFITDCK Unmodified 1735.8127 0.81272309 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 1 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 70.598 70.699 3 1.5182E-06 22367 20211116_3445_TMUAki_TMT10x_S_F6 92.063 72.485 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10183 1094 9463 54056;54057;54058 65476;65477;65478 65478 3 KIGDEYFTFITDCKDPK Unmodified 2075.9874 0.98739299 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 2 By MS/MS By MS/MS 6.56 2.21 2 2 5 7 7 9 67.96 68.143 3;4;5 3.3217E-16 21264 20211116_3435_TMUAki_TMT10x_P_F7 159.26 143.84 439320000 731790000 6980100 709220000 507320000 699950000 469130000 427020000 389740000 427930000 504640000 409110000 682750000 43756000 724970000 485900000 707500000 475400000 447960000 404040000 417900000 483250000 25 25 19 25 25 25 25 25 25 25 25 288540000 464970000 3546100 452970000 319500000 545210000 314990000 277480000 245810000 273290000 320400000 268680000 433820000 27599000 464330000 306450000 543720000 317600000 295510000 255740000 267080000 306770000 10 10 9 10 10 10 10 10 10 10 10 150790000 266820000 3434000 256250000 187820000 154730000 154140000 149540000 143930000 154650000 184240000 140420000 248930000 16157000 260640000 179450000 163780000 157800000 152460000 148300000 150820000 176480000 15 15 10 15 15 15 15 15 15 15 15 46720000000 28082000000 18638000000 10184 1094 9464 54059;54060;54061;54062;54063;54064;54065;54066;54067;54068;54069;54070;54071;54072;54073;54074 65479;65480;65481;65482;65483;65484;65485;65486;65487;65488;65489;65490;65491;65492;65493;65494;65495;65496;65497;65498;65499;65500;65501;65502;65503;65504 65482 26 KIGGIFAFK Unmodified 979.58549 0.58548775 768 P22307;P22307-6;P22307-2;P22307-4;P22307-7;P22307-8 SCP2 Non-specific lipid-transfer protein yes no 0 0 0 1 By MS/MS 6 0 1 1 60.176 60.186 3 0.0023282 18014 20211116_3445_TMUAki_TMT10x_S_F6 70.908 37.646 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10185 768 9465 54075 65505 65505 1 KIGILHENFQTLK Unmodified 1539.8773 0.87731267 3350 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 50.766 50.507 4 8.9299E-07 15746 20211116_3429_TMUAki_TMT10x_P_F2 117.7 102.73 7856800 12876000 116000 15012000 11728000 10197000 8913300 7957700 8523000 8113100 10622000 7316400 12023000 813710 15092000 11182000 10635000 9176200 8208500 8762300 7917300 10182000 3 3 3 3 3 3 3 3 3 3 3 3491700 5505900 6209.4 6760400 7822300 6898000 4896000 3311000 3666700 3437300 4490200 3251100 5142300 355920 6810200 7427200 6938100 5081200 3551200 3813200 3351900 4306000 1 1 1 1 1 1 1 1 1 1 1 4365200 7370300 109790 8251800 3905600 3299300 4017300 4646700 4856400 4675800 6131700 4065200 6880600 457790 8281900 3754300 3696900 4095000 4657300 4949000 4565400 5875500 2 2 2 2 2 2 2 2 2 2 2 1394900000 796280000 598640000 10186 3350 9466 54076;54077;54078 65506;65507;65508 65506 3 KIGLETVGVK Unmodified 1042.6386 0.63864553 1871 Q16881;Q16881-3;Q16881-4;Q16881-5;Q16881-2;Q16881-6;Q16881-7 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 0 0 0 1 By MS/MS 8 0 1 1 47.06 47.179 3 1.4372E-07 12982 20211116_3436_TMUAki_TMT10x_P_F8 113.61 74.461 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10187 1871 9467 54079 65509 65509 1 KIGVFSK Unmodified 777.47487 0.47487467 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 42.651 42.782 3 0.010374 11868 20211116_3442_TMUAki_TMT10x_S_F4 77.732 25.016 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10188 3317 9468 54080;54081 65510;65511 65511 2 KIGYNPDTVAFVPISGWNGDNMLEPSANMPWFK Oxidation (M) 3710.7538 0.753775 1416 P68104;Q5VTE0 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 0 0 1 1 By MS/MS 2 0 2 2 79.482 79.458 4;5 1.6114E-06 26249 20211116_3440_TMUAki_TMT10x_S_F2 67.459 59.525 3217300 5594200 101650 5664400 3579000 3505200 4412400 2041600 1683900 2614600 3424600 2996400 5220300 366540 5741400 3458900 3671100 4347700 2166800 1894200 2529900 3249700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3217300 5594200 101650 5664400 3579000 3505200 4412400 2041600 1683900 2614600 3424600 2996400 5220300 366540 5741400 3458900 3671100 4347700 2166800 1894200 2529900 3249700 2 2 2 2 2 2 2 2 2 2 2 2848900000 0 2848900000 10189 1416 9469 54082;54083 65512;65513 65512 1900;1901 2 KIHIDLPNEQAR Unmodified 1432.7787 0.77866126 1357 P62333 PSMC6 26S protease regulatory subunit 10B yes yes 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 39.375 39.603 4 0.00011565 9260 20211116_3434_TMUAki_TMT10x_P_F6 92.969 80.993 2242500 3389300 43122 3613300 4735400 4772200 2861400 2704400 2903800 2466600 3075500 2088100 3163400 245450 3687700 4495000 4743600 3001700 2846800 2958300 2418800 2961500 3 3 2 3 3 3 3 3 3 3 3 2242500 3389300 43122 3613300 4735400 4772200 2861400 2704400 2903800 2466600 3075500 2088100 3163400 245450 3687700 4495000 4743600 3001700 2846800 2958300 2418800 2961500 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 109260000 109260000 0 10190 1357 9470 54084;54085 65514;65515;65516 65514 3 KIHPQTIIAGWR Unmodified 1418.8147 0.81465284 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 1 By MS/MS By MS/MS 5.17 0.799 3 4 5 7 5 44.507 44.641 3;4 1.1252E-16 11278 20211116_3434_TMUAki_TMT10x_P_F6 182.02 140.73 17240000 27273000 267700 33847000 27340000 21425000 19428000 14519000 13250000 14300000 22871000 16054000 25473000 1818900 33880000 26033000 22437000 19929000 15104000 14092000 13975000 21765000 11 11 9 11 11 11 11 11 11 11 11 7305000 11024000 77165 13436000 18039000 15291000 11766000 6237000 5575900 5959500 9338400 6802200 10295000 826540 13564000 17143000 15260000 12071000 6790000 6077000 5831800 8891900 5 5 3 5 5 5 5 5 5 5 5 9935400 16249000 190530 20411000 9302000 6133900 7662100 8282300 7674400 8340300 13533000 9252200 15177000 992410 20315000 8889500 7177700 7858100 8314200 8014800 8143200 12873000 6 6 6 6 6 6 6 6 6 6 6 3580600000 2396700000 1183800000 10191 1429 9471 54086;54087;54088;54089;54090;54091;54092;54093;54094;54095;54096;54097 65517;65518;65519;65520;65521;65522;65523;65524;65525;65526;65527;65528;65529;65530;65531 65523 15 KIHTEPQLSAALEYVR Unmodified 1853.9999 0.99994701 1065 P47897 QARS Glutamine--tRNA ligase yes yes 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 50.486 50.767 4 1.1374E-35 13945 20211116_3447_TMUAki_TMT10x_S_F8 207.55 187.08 8340900 13788000 205700 14923000 10443000 11329000 9364400 11045000 10086000 9284200 11229000 7767700 12870000 908700 15090000 9998300 11757000 9577400 11191000 10270000 9140000 10797000 5 5 4 5 5 5 5 5 5 5 5 2737000 4536300 95301 4546600 4718600 6157000 3669200 3671600 3359800 3072200 3782500 2549100 4232800 343490 4661600 4503800 6117200 3767100 3840500 3446500 3025100 3635800 2 2 2 2 2 2 2 2 2 2 2 5603900 9251700 110400 10377000 5724300 5172300 5695200 7373100 6726100 6212100 7446600 5218600 8637100 565210 10429000 5494500 5639700 5810300 7350700 6823100 6114900 7161100 3 3 2 3 3 3 3 3 3 3 3 2144600000 1182100000 962510000 10192 1065 9472 54098;54099;54100;54101 65532;65533;65534;65535;65536 65535 5 KIHVYGYSMAYGPAQHAISTEK Oxidation (M) 2466.2002 0.20017973 2936 Q9NRX4 PHPT1 14 kDa phosphohistidine phosphatase yes yes 0 0 1 1 By MS/MS 2 0 1 1 42.667 42.706 5 2.941E-05 11279 20211116_3440_TMUAki_TMT10x_S_F2 75.064 64.375 694960 1151600 27900 1605800 559820 572270 511760 765500 863340 844920 989270 647290 1076300 81726 1590600 537260 651080 532490 770940 867390 821920 950410 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 694960 1151600 27900 1605800 559820 572270 511760 765500 863340 844920 989270 647290 1076300 81726 1590600 537260 651080 532490 770940 867390 821920 950410 1 1 1 1 1 1 1 1 1 1 1 61300000 0 61300000 10193 2936 9473 54102 65537 65537 3029 1 KIIATVLMTEDIK Oxidation (M) 1489.8426 0.84256665 1511 Q04637;Q04637-3;Q04637-8;Q04637-5;Q04637-4;Q04637-9;Q04637-6;Q04637-7 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 1 1 By MS/MS 1 0 1 1 65.467 65.467 3 0.00072658 20334 20211116_3428_TMUAki_TMT10x_P_F1 67.997 45.799 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10194 1511 9474 54103 65538 65538 2050 1 KIIATVLMTEDIK Unmodified 1473.8477 0.84765203 1511 Q04637;Q04637-3;Q04637-8;Q04637-5;Q04637-4;Q04637-9;Q04637-6;Q04637-7 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 1 By MS/MS By MS/MS 2 0 3 2 1 71.588 71.39 3 8.6806E-13 24341 20211116_3429_TMUAki_TMT10x_P_F2 135.37 114.12 2749900 4819900 0 4124000 3627300 2991800 3180200 2389600 1940600 2397200 3323400 2560400 4494900 235880 4239400 3466500 3104100 3210800 2460200 2077500 2340900 3163200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2749900 4819900 0 4124000 3627300 2991800 3180200 2389600 1940600 2397200 3323400 2560400 4494900 235880 4239400 3466500 3104100 3210800 2460200 2077500 2340900 3163200 1 1 0 1 1 1 1 1 1 1 1 424710000 274770000 149940000 10195 1511 9474 54104;54105;54106 65539;65540 65539 2 KIIDPLPPIDHSEIDYPPFEK Unmodified 2462.2733 0.2733279 2125 Q86XP3;Q86XP3-2 DDX42 ATP-dependent RNA helicase DDX42 yes no 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 70.237 70.598 4 1.2682E-10 23801 20211116_3435_TMUAki_TMT10x_P_F7 116.48 104.63 10216000 16321000 4682.2 13958000 11248000 13615000 11418000 9333100 8912200 10012000 11157000 9511600 15220000 750740 14401000 10782000 13795000 11495000 9725700 9256000 9750600 10693000 2 2 1 2 2 2 2 2 2 2 2 3527600 6064500 4682.2 5377200 3831600 7042900 4080800 3451300 3697800 3936600 3872700 3284600 5656300 301080 5559100 3680400 6991400 4114500 3704800 3784800 3824700 3730400 1 1 1 1 1 1 1 1 1 1 1 6688900 10256000 0 8580800 7416200 6572200 7337300 5881800 5214400 6075800 7284000 6227100 9564000 449660 8842100 7101500 6803700 7380900 6020900 5471100 5925900 6962500 1 1 0 1 1 1 1 1 1 1 1 1803000000 999820000 803220000 10196 2125 9475 54107;54108 65541 65541 1 KIIETPGIR Unmodified 1025.6233 0.62332982 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 5.17 3.02 2 1 1 2 4 2 37.816 37.988 3 0.0011014 11409 20211116_3439_TMUAki_TMT10x_S_F1 91.549 64.024 6947800 10820000 41439 10828000 9749000 9045800 7118300 6662000 7187900 6442500 8250300 6469100 10096000 617910 11020000 9281800 9271600 7360100 6887200 7347100 6301100 7925800 8 8 4 8 8 8 8 8 8 8 8 4124200 6207400 13716 6115400 6881500 6409400 4171100 3611300 4042500 3682900 4638800 3839800 5791900 357350 6249600 6528600 6448500 4368700 3815100 4139400 3594000 4456400 5 5 1 5 5 5 5 5 5 5 5 2823700 4612200 27723 4713000 2867500 2636400 2947200 3050700 3145400 2759600 3611400 2629300 4304100 260550 4769900 2753200 2823200 2991400 3072100 3207800 2707200 3469400 3 3 3 3 3 3 3 3 3 3 3 580170000 372410000 207760000 10197 1018 9476 54109;54110;54111;54112;54113;54114 65542;65543;65544;65545;65546;65547;65548;65549 65547 8 KIIIPPFLAYGEK Unmodified 1487.8752 0.87518741 2413 Q96AY3 FKBP10 Peptidyl-prolyl cis-trans isomerase FKBP10 yes yes 0 0 0 1 By matching By MS/MS 4 0 2 1 1 75.212 75.182 3 0.0019872 25175 20211116_3442_TMUAki_TMT10x_S_F4 70.889 51.284 3153900 5710700 97828 4748900 4939700 4516800 4282600 4329700 4481500 4638100 4380100 2937400 5325100 377670 4909200 4725900 4611500 4384500 4420800 4546800 4517100 4228400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3153900 5710700 97828 4748900 4939700 4516800 4282600 4329700 4481500 4638100 4380100 2937400 5325100 377670 4909200 4725900 4611500 4384500 4420800 4546800 4517100 4228400 1 1 1 1 1 1 1 1 1 1 1 627140000 330780000 296350000 10198 2413 9477 54115;54116 65550 65550 1 KIIITEDGEFK Unmodified 1291.7024 0.702368 796 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 0 0 0 1 By MS/MS 5 0 1 1 52.517 52.702 3 0.082244 14621 20211116_3444_TMUAki_TMT10x_S_F5 41.56 21.551 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10199 796 9478 54117 65551 65551 1 KIIVDTYGGWGAHGGGAFSGK Unmodified 2077.0381 0.038123426 885 P31153;P31153-2;Q00266 MAT2A;MAT1A S-adenosylmethionine synthase isoform type-2;S-adenosylmethionine synthase isoform type-1 yes no 0 0 0 1 By MS/MS 3 0 1 1 55.272 55.075 4 1.6482E-07 18199 20211116_3430_TMUAki_TMT10x_P_F3 93.006 82.348 3445400 5151900 46530 6437600 5776700 7013200 4948000 2531400 2586200 2722700 4008500 3208400 4812100 361670 6485200 5521000 7008400 4989200 2805600 2784800 2651200 3822800 1 1 1 1 1 1 1 1 1 1 1 3445400 5151900 46530 6437600 5776700 7013200 4948000 2531400 2586200 2722700 4008500 3208400 4812100 361670 6485200 5521000 7008400 4989200 2805600 2784800 2651200 3822800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 562690000 562690000 0 10200 885 9479 54118 65552 65552 1 KILDSVGIEADDDRLNK Unmodified 1899.9902 0.99017018 507 P05387 RPLP2 60S acidic ribosomal protein P2 yes yes 0 0 0 2 By MS/MS By MS/MS 5.6 1.02 2 2 4 2 4 6 53.148 53.329 3;4 1.7055E-35 15990 20211116_3433_TMUAki_TMT10x_P_F5 200.26 179.89 87419000 131770000 734440 164690000 82715000 84690000 67518000 78777000 89577000 81067000 99459000 81397000 123080000 7321500 164490000 78938000 91078000 69963000 80462000 90514000 79080000 95638000 11 11 6 11 11 11 11 11 11 11 11 24060000 34717000 487180 42404000 43532000 43902000 23677000 20041000 24208000 20198000 27321000 22406000 32424000 2721500 42739000 41271000 44096000 25071000 21585000 24715000 19720000 26259000 3 3 3 3 3 3 3 3 3 3 3 63359000 97050000 247260 122290000 39183000 40788000 43841000 58737000 65369000 60869000 72138000 58991000 90652000 4600000 121750000 37667000 46982000 44893000 58877000 65799000 59360000 69379000 8 8 3 8 8 8 8 8 8 8 8 7207800000 3200500000 4007300000 10201 507 9480 54119;54120;54121;54122;54123;54124;54125;54126;54127;54128 65553;65554;65555;65556;65557;65558;65559;65560;65561;65562;65563;65564;65565 65553 13 KILFEDFR Unmodified 1066.5811 0.58113065 2197 Q8N543 OGFOD1 Prolyl 3-hydroxylase OGFOD1 yes yes 0 0 0 1 By MS/MS 7.5 0.5 1 1 2 54.835 55.262 3 0.0070287 17380 20211116_3435_TMUAki_TMT10x_P_F7 68.657 42.059 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10202 2197 9481 54129;54130 65566;65567 65566 2 KILQDGGLQVVEK Unmodified 1425.8191 0.81912909 201 O43175 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 1 By MS/MS By matching 7 0 2 1 1 51.783 52.381 3 5.6347E-09 16250 20211116_3435_TMUAki_TMT10x_P_F7 122.93 84.933 2547600 4117600 126510 4404200 5734400 10240000 4453800 11448000 7188300 6620300 5436900 2373000 3843200 373750 4560100 5473900 10099000 4669200 11434000 7131100 6664700 5299000 1 1 1 1 1 1 1 1 1 1 1 2547600 4117600 126510 4404200 5734400 10240000 4453800 11448000 7188300 6620300 5436900 2373000 3843200 373750 4560100 5473900 10099000 4669200 11434000 7131100 6664700 5299000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 553910000 365990000 187930000 10203 201 9482 54131;54132 65568 65568 1 KIMSSPLSK Oxidation (M) 1005.5529 0.55286699 1306 P61254;Q9UNX3 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 0 0 1 1 By MS/MS 1.5 0.5 1 1 2 35.893 35.778 3 0.034187 9798 20211116_3429_TMUAki_TMT10x_P_F2 47.302 25.93 893590 1688500 15505 1316000 2230600 2316100 1330000 1210400 1436100 1211700 1418500 832140 1574200 107260 1383800 2117100 2272900 1399500 1286500 1455700 1183300 1368900 1 1 1 1 1 1 1 1 1 1 1 893590 1688500 15505 1316000 2230600 2316100 1330000 1210400 1436100 1211700 1418500 832140 1574200 107260 1383800 2117100 2272900 1399500 1286500 1455700 1183300 1368900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 59324000 59324000 0 10204 1306 9483 54133;54134 65569 65569 1763 1 KINLELR Unmodified 884.54435 0.54435122 2666 Q9BTT0;Q9BTT0-2 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E yes no 0 0 0 1 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 41.476 41.631 3 0.0034078 10692 20211116_3428_TMUAki_TMT10x_P_F1 105.57 38.536 9621900 14888000 75660 15218000 15357000 16722000 11121000 12948000 12207000 11464000 12926000 8958800 13893000 861160 15524000 14618000 16858000 11535000 13311000 12397000 11257000 12447000 5 5 4 5 5 5 5 5 5 5 5 6007200 9040600 26413 9143000 11116000 13650000 7964900 8122500 7779700 7033900 7929600 5592800 8436200 506810 9387500 10576000 13504000 8238200 8504800 7928000 6914500 7644800 2 2 1 2 2 2 2 2 2 2 2 3614700 5847200 49247 6074800 4240700 3071800 3155700 4825600 4427500 4429800 4996600 3366000 5456900 354350 6136300 4041900 3354000 3297000 4806000 4468800 4342600 4802400 3 3 3 3 3 3 3 3 3 3 3 1441200000 897730000 543430000 10205 2666 9484 54135;54136;54137;54138;54139;54140 65570;65571;65572;65573;65574;65575 65570 6 KIPDPDSDDVSEVDAR Unmodified 1756.8115 0.81153711 1154 P51532-5;P51532-2;P51532-3;P51532-4;P51532 SMARCA4 Transcription activator BRG1 yes no 0 0 0 1 By MS/MS By matching 2.5 0.5 1 1 1 1 42.126 41.827 3 7.1141E-15 12312 20211116_3429_TMUAki_TMT10x_P_F2 143.39 130.56 572570 885810 3138.5 1394700 2271200 1692000 892170 704300 1016900 634600 972190 533140 828460 74185 1391300 2143200 1683200 980930 763840 1027500 622660 939220 1 1 1 1 1 1 1 1 1 1 1 572570 885810 3138.5 1394700 2271200 1692000 892170 704300 1016900 634600 972190 533140 828460 74185 1391300 2143200 1683200 980930 763840 1027500 622660 939220 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 89379000 72063000 17316000 10206 1154 9485 54141;54142 65576 65576 1 KIPGISR Unmodified 769.48102 0.48102268 1128 P49915;P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 34.42 34.181 3 0.05254 9236 20211116_3429_TMUAki_TMT10x_P_F2 52.403 12.3 743290 1234800 11803 1210500 800590 634240 810290 715750 773660 653560 921940 692170 1152100 73427 1228000 768600 683500 820270 721750 793930 640860 884770 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 743290 1234800 11803 1210500 800590 634240 810290 715750 773660 653560 921940 692170 1152100 73427 1228000 768600 683500 820270 721750 793930 640860 884770 1 1 1 1 1 1 1 1 1 1 1 38189000 0 38189000 10207 1128 9486 54143;54144 65577;65578 65577 2 KIPGIYVLSLEIGK Unmodified 1528.9229 0.92286588 1144 P50897 PPT1 Palmitoyl-protein thioesterase 1 yes yes 0 0 0 1 By MS/MS 4 0 1 1 77.48 77.43 3 4.2913E-07 26040 20211116_3442_TMUAki_TMT10x_S_F4 102.5 86.412 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10208 1144 9487 54145 65579 65579 1 KIPIIIR Unmodified 851.59566 0.59565851 1302 P61218 POLR2F DNA-directed RNA polymerases I, II, and III subunit RPABC2 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 46.164 46.307 3 0.0026705 12055 20211116_3444_TMUAki_TMT10x_S_F5 117.93 89.827 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10209 1302 9488 54146;54147 65580;65581 65581 2 KIPLVPENLLK Unmodified 1262.7962 0.79620881 1969 Q6DKI1;Q6DKI1-2 RPL7L1 60S ribosomal protein L7-like 1 yes no 0 0 0 1 By MS/MS 2 0.816 1 1 1 3 65.184 64.875 3 1.3975E-05 20313 20211116_3440_TMUAki_TMT10x_S_F2 102.97 75.872 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10210 1969 9489 54148;54149;54150 65582;65583;65584 65583 3 KIPNPDFFEDLEPFR Unmodified 1862.9203 0.9202997 834 P27824;P27824-2;P27824-3 CANX Calnexin yes no 0 0 0 1 By MS/MS By MS/MS 6.04 1.71 2 2 4 4 9 15 26 12 47 27 56.178 56.219 2;3 1.0641E-33 27262 20211116_3446_TMUAki_TMT10x_S_F7 229.92 206.78 325630000 516670000 2930500 477280000 376460000 504680000 406680000 298630000 294750000 318640000 393680000 303200000 481960000 28918000 490100000 361820000 507820000 407470000 314630000 308270000 310380000 376700000 86 86 46 86 86 86 86 86 86 86 86 196180000 310840000 2362700 291410000 175530000 338350000 221330000 183400000 177820000 194710000 236450000 182680000 289970000 17542000 299360000 169580000 338310000 220770000 194630000 184890000 189700000 226280000 60 60 37 60 60 60 60 60 60 60 60 129440000 205830000 567740 185870000 200920000 166330000 185340000 115230000 116930000 123930000 157220000 120520000 191990000 11376000 190740000 192240000 169500000 186700000 120000000 123380000 120680000 150420000 26 26 9 26 26 26 26 26 26 26 26 86983000000 42649000000 44334000000 10211 834 9490 54151;54152;54153;54154;54155;54156;54157;54158;54159;54160;54161;54162;54163;54164;54165;54166;54167;54168;54169;54170;54171;54172;54173;54174;54175;54176;54177;54178;54179;54180;54181;54182;54183;54184;54185;54186;54187;54188;54189;54190;54191;54192;54193;54194;54195;54196;54197;54198;54199;54200;54201;54202;54203;54204;54205;54206;54207;54208;54209;54210;54211;54212;54213;54214;54215;54216;54217;54218;54219;54220;54221;54222;54223;54224 65585;65586;65587;65588;65589;65590;65591;65592;65593;65594;65595;65596;65597;65598;65599;65600;65601;65602;65603;65604;65605;65606;65607;65608;65609;65610;65611;65612;65613;65614;65615;65616;65617;65618;65619;65620;65621;65622;65623;65624;65625;65626;65627;65628;65629;65630;65631;65632;65633;65634;65635;65636;65637;65638;65639;65640;65641;65642;65643;65644;65645;65646;65647;65648;65649;65650;65651;65652;65653;65654;65655;65656;65657;65658;65659;65660;65661;65662;65663;65664;65665;65666;65667;65668;65669;65670;65671;65672;65673;65674;65675;65676;65677;65678;65679;65680;65681;65682;65683;65684 65679 100 KIPVLVQSKDDVIVTASNFSSER Unmodified 2531.3595 0.35951714 67 O00178 GTPBP1 GTP-binding protein 1 yes yes 0 0 0 2 By MS/MS By MS/MS 2 0 2 1 1 68 67.744 4 1.586E-45 22838 20211116_3429_TMUAki_TMT10x_P_F2 202.46 191.16 19580000 31845000 479950 31446000 22812000 30150000 22863000 23591000 22236000 23032000 24733000 18234000 29714000 2108300 32089000 21903000 30647000 23169000 24300000 22738000 22517000 23782000 6 6 4 6 6 6 6 6 6 6 6 9973100 15581000 286720 15007000 10805000 19850000 12118000 11690000 11160000 11749000 12092000 9288000 14536000 1099400 15423000 10410000 19740000 12193000 12299000 11429000 11472000 11635000 3 3 2 3 3 3 3 3 3 3 3 9606700 16265000 193230 16439000 12007000 10300000 10745000 11901000 11076000 11283000 12641000 8946200 15177000 1008900 16666000 11493000 10908000 10975000 12001000 11309000 11045000 12146000 3 3 2 3 3 3 3 3 3 3 3 2136300000 1123000000 1013200000 10212 67 9491 54225;54226 65685;65686;65687;65688;65689;65690 65686 6 KIPVPANR Unmodified 893.54469 0.54468557 2935 Q9NRX1 PNO1 RNA-binding protein PNO1 yes yes 0 0 0 1 By MS/MS 2 0 1 1 32.519 32.296 3 0.016187 8434 20211116_3429_TMUAki_TMT10x_P_F2 63.565 36.04 603410 1007900 10235 1017200 1167200 1276700 724680 656430 686480 629360 802110 561910 940520 67462 1040900 1108600 1270700 757030 697910 704150 615780 770190 1 1 1 1 1 1 1 1 1 1 1 603410 1007900 10235 1017200 1167200 1276700 724680 656430 686480 629360 802110 561910 940520 67462 1040900 1108600 1270700 757030 697910 704150 615780 770190 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36179000 36179000 0 10213 2935 9492 54227 65691 65691 1 KIPVPPR Unmodified 805.51741 0.51740818 993 P41091;Q2VIR3;Q2VIR3-2 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 0 0 0 1 By MS/MS 2 0 1 1 32.682 32.748 3 0.028032 7340 20211116_3440_TMUAki_TMT10x_S_F2 69.383 36.026 63946 120550 299.75 110690 69590 66590 84875 58056 62709 72789 102250 59543 112450 5660 112960 67129 70366 84607 59899 66169 70482 97412 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 63946 120550 299.75 110690 69590 66590 84875 58056 62709 72789 102250 59543 112450 5660 112960 67129 70366 84607 59899 66169 70482 97412 1 1 1 1 1 1 1 1 1 1 1 2351600 0 2351600 10214 993 9493 54228 65692 65692 1 KIPVPPRDFTSEPR Unmodified 1637.8889 0.88893999 993 P41091;Q2VIR3;Q2VIR3-2 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 0 0 0 2 By MS/MS 1 0 1 1 40.605 40.443 4 0.00061731 12097 20211116_3439_TMUAki_TMT10x_S_F1 80.719 58.846 526860 791530 0 988710 404510 309260 376640 623850 696520 503410 676250 490510 739320 35612 984560 386750 364030 393400 614800 693880 496620 652980 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 526860 791530 0 988710 404510 309260 376640 623850 696520 503410 676250 490510 739320 35612 984560 386750 364030 393400 614800 693880 496620 652980 1 1 0 1 1 1 1 1 1 1 1 24055000 0 24055000 10215 993 9494 54229 65693 65693 1 KIPVVFR Unmodified 857.54871 0.54870831 612 P10768 ESD S-formylglutathione hydrolase yes yes 0 0 0 1 By MS/MS By MS/MS 4 1.22 1 2 2 2 1 4 4 44.866 44.883 3 0.00095394 12549 20211116_3433_TMUAki_TMT10x_P_F5 134.66 107.14 29270000 43442000 125510 44730000 44356000 47826000 23522000 37998000 30331000 33774000 37609000 27254000 40541000 2712500 45588000 42012000 48310000 25160000 39003000 30817000 33160000 36054000 7 7 4 7 7 7 7 7 7 7 7 15577000 22362000 19431 21977000 29780000 33863000 8619500 19885000 15424000 17641000 19453000 14504000 20864000 1488500 22625000 28022000 33450000 10060000 20856000 15537000 17321000 18641000 4 4 2 4 4 4 4 4 4 4 4 13693000 21080000 106080 22753000 14576000 13963000 14903000 18113000 14907000 16133000 18156000 12751000 19676000 1224000 22962000 13990000 14860000 15100000 18147000 15280000 15838000 17414000 3 3 2 3 3 3 3 3 3 3 3 4451000000 2436400000 2014700000 10216 612 9495 54230;54231;54232;54233;54234;54235;54236;54237 65694;65695;65696;65697;65698;65699;65700 65697 7 KIQALQQQADEAEDRAQGLQR Unmodified 2395.2204 0.2203979 1413 P67936 TPM4 Tropomyosin alpha-4 chain yes yes 0 0 0 2 By MS/MS By MS/MS 5.6 1.02 1 1 2 1 2 3 48.904 49.118 4 4.2405E-44 13051 20211116_3434_TMUAki_TMT10x_P_F6 205.24 190.32 + 20325000 35460000 233680 38142000 33334000 34473000 23475000 30882000 30723000 25517000 29506000 18925000 33098000 1883600 38667000 31716000 35264000 24551000 31419000 30895000 25142000 28501000 7 7 4 7 7 7 7 7 7 7 7 11408000 18963000 47517 21747000 24155000 26007000 16043000 16904000 17557000 13713000 15713000 10621000 17705000 977070 22052000 22948000 26027000 16744000 17550000 17730000 13524000 15215000 3 3 1 3 3 3 3 3 3 3 3 8917700 16497000 186160 16396000 9179200 8465400 7431400 13978000 13166000 11804000 13792000 8304500 15393000 906510 16615000 8768200 9237000 7806900 13869000 13165000 11618000 13285000 4 4 3 4 4 4 4 4 4 4 4 4104800000 2075700000 2029100000 10217 1413 9496 54238;54239;54240;54241;54242 65701;65702;65703;65704;65705;65706;65707 65703 7 KIQDHQVVINCAIPK Unmodified 1761.956 0.9559737 2209 Q8N8S7-3;Q8N8S7-2;Q8N8S7 ENAH Protein enabled homolog yes no 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 42.061 42.08 4 4.7991E-05 10783 20211116_3428_TMUAki_TMT10x_P_F1 92.265 68.785 4466900 7182800 65424 8482800 10404000 9551400 5759900 6881000 7111800 6030100 7049900 4159400 6707200 485490 8578000 9860900 9604400 6127200 7105500 7173600 5924400 6802700 5 5 3 5 5 5 5 5 5 5 5 3091600 5038500 55728 5808400 9085000 8390700 4656100 4970500 4992200 4314800 4932000 2878800 4704300 375960 5909800 8602100 8311700 4964900 5206600 5061900 4241000 4759600 3 3 2 3 3 3 3 3 3 3 3 1375300 2144400 9695.9 2674300 1318700 1160800 1103800 1910500 2119500 1715300 2117800 1280500 2002900 109530 2668200 1258800 1292700 1162300 1898800 2111800 1683300 2043100 2 2 1 2 2 2 2 2 2 2 2 515460000 418640000 96817000 10218 2209 9497 54243;54244;54245;54246 65708;65709;65710;65711;65712 65708 5 KIQEESLR Unmodified 1001.5506 0.55055881 2588 Q99613;Q99613-2;B5ME19 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 31.436 31.419 3 0.088532 6958 20211116_3431_TMUAki_TMT10x_P_F4 40.244 17.714 660510 1055500 0 1185200 1573500 1265700 824910 497380 733060 527690 911080 614990 985380 66501 1201200 1489900 1267200 873040 545390 756100 514120 873380 1 1 0 1 1 1 1 1 1 1 1 660510 1055500 0 1185200 1573500 1265700 824910 497380 733060 527690 911080 614990 985380 66501 1201200 1489900 1267200 873040 545390 756100 514120 873380 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37837000 37837000 0 10219 2588 9498 54247;54248 65713 65713 1 KIQNDAGVR Unmodified 999.54614 0.54614213 2408;2407;2380;2494 Q92945;Q96AE4-2;Q96AE4;Q96I24;Q96I24-2 KHSRP;FUBP1;FUBP3 Far upstream element-binding protein 2;Far upstream element-binding protein 1;Far upstream element-binding protein 3 no no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 28.229 28.218 3 0.0009142 6033 20211116_3433_TMUAki_TMT10x_P_F5 95.822 61.866 801180 1268700 12648 1109000 861540 1250300 837210 477760 592090 541100 886840 746070 1183200 78833 1144800 826230 1247700 842900 526640 623540 525860 846380 2 2 1 2 2 2 2 2 2 2 2 801180 1268700 12648 1109000 861540 1250300 837210 477760 592090 541100 886840 746070 1183200 78833 1144800 826230 1247700 842900 526640 623540 525860 846380 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17796000 17796000 0 10220 2380;2408;2407;2494 9499 54249;54250 65714 65714 1 KIQVLQQQADDAEERAER Unmodified 2126.0716 0.071608399 526;527 P06753-2;P06753-3;P06753-5;P06753-4;P06753-6 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 2 By MS/MS By MS/MS 4.14 1.25 2 2 4 4 2 6 8 43.239 43.265 3;4 4.5645E-70 14395 20211116_3441_TMUAki_TMT10x_S_F3 278.07 245.77 44762000 75137000 1525000 97025000 92358000 90998000 52088000 75922000 82937000 64931000 72976000 41687000 70192000 5494600 97345000 87617000 92736000 55895000 77624000 82671000 63867000 70706000 20 20 15 20 20 20 20 20 20 20 20 25274000 41487000 841400 54525000 79374000 77578000 42114000 44334000 49077000 37895000 40683000 23538000 38761000 3468900 55048000 75210000 76862000 44881000 46561000 49325000 37276000 39506000 8 8 6 8 8 8 8 8 8 8 8 19487000 33650000 683630 42500000 12984000 13420000 9974100 31587000 33860000 27036000 32292000 18149000 31432000 2025800 42297000 12407000 15874000 11014000 31063000 33346000 26592000 31200000 12 12 9 12 12 12 12 12 12 12 12 10168000000 6520200000 3647400000 10221 526;527 9500 54251;54252;54253;54254;54255;54256;54257;54258;54259;54260;54261;54262;54263;54264 65715;65716;65717;65718;65719;65720;65721;65722;65723;65724;65725;65726;65727;65728;65729;65730;65731;65732;65733;65734 65725 20 KIRLESEEEGVPSTAIR Unmodified 1913.0218 0.02180466 517 P06493;P06493-2 CDK1 Cyclin-dependent kinase 1 yes no 0 0 0 2 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 40.188 40.26 4 3.3613E-21 9594 20211116_3444_TMUAki_TMT10x_S_F5 162.81 140.38 1915300 3031300 6337.8 3610600 4221500 4233800 2365000 2993400 3114600 2441000 3044500 1783300 2830700 180730 3651800 4000500 4246800 2519200 3089600 3133300 2406700 2939100 2 2 1 2 2 2 2 2 2 2 2 1475000 2277100 0 2758700 3738200 3886600 1992300 2304900 2404300 1882700 2351300 1373200 2126600 137710 2797200 3539400 3854300 2124900 2410600 2426100 1856100 2269800 1 1 0 1 1 1 1 1 1 1 1 440360 754210 6337.8 851950 483320 347140 372670 688560 710270 558300 693230 410060 704120 43017 854680 461030 392450 394250 678950 707200 550630 669260 1 1 1 1 1 1 1 1 1 1 1 762690000 546640000 216050000 10222 517 9501 54265;54266;54267 65735;65736 65736 2 KISEIEDAAFLAR Unmodified 1461.7827 0.78274359 394 O94905 ERLIN2 Erlin-2 yes yes 0 0 0 1 By MS/MS By MS/MS 5.5 1.12 1 1 1 1 2 2 60.094 60.177 3 3.5644E-06 18011 20211116_3445_TMUAki_TMT10x_S_F6 110.22 88.436 27564000 46143000 87429 44723000 33548000 34746000 28879000 33507000 33344000 33693000 37196000 25663000 43051000 2229400 45575000 32041000 35985000 29675000 34136000 33863000 32899000 35762000 5 5 1 5 5 5 5 5 5 5 5 5451500 9251200 87429 9233900 8432700 12418000 7457000 7399200 6914300 6769300 7366000 5076500 8632300 575200 9469000 8066400 12341000 7598200 7757400 7073900 6637200 7091700 1 1 1 1 1 1 1 1 1 1 1 22112000 36891000 0 35489000 25115000 22329000 21422000 26108000 26430000 26924000 29830000 20587000 34418000 1654200 36107000 23974000 23643000 22077000 26378000 26789000 26262000 28670000 4 4 0 4 4 4 4 4 4 4 4 1559400000 513230000 1046100000 10223 394 9502 54268;54269;54270;54271 65737;65738;65739;65740;65741;65742 65741 6 KISELDAFLK Unmodified 1162.6598 0.6597749 1527 Q06323;Q06323-2;Q06323-3 PSME1 Proteasome activator complex subunit 1 yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 64.38 64.453 3 4.3287E-05 19983 20211116_3436_TMUAki_TMT10x_P_F8 95.417 57.696 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10224 1527 9503 54272;54273 65743;65744 65743 2 KISELDAFLKEPALNEANLSNLK Unmodified 2556.3799 0.37991824 1527 Q06323;Q06323-2;Q06323-3 PSME1 Proteasome activator complex subunit 1 yes no 0 0 0 2 By MS/MS 8 0 1 1 76.838 76.847 4 1.5714E-20 25127 20211116_3436_TMUAki_TMT10x_P_F8 148.17 140.64 7961000 15553000 98054 9410900 11332000 33069000 16915000 24479000 20601000 21457000 17338000 7413000 14490000 772900 10388000 11010000 32036000 16980000 25231000 20681000 21081000 16826000 2 2 1 2 2 2 2 2 2 2 2 7961000 15553000 98054 9410900 11332000 33069000 16915000 24479000 20601000 21457000 17338000 7413000 14490000 772900 10388000 11010000 32036000 16980000 25231000 20681000 21081000 16826000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1020100000 1020100000 0 10225 1527 9504 54274 65745;65746 65746 2 KISGGSVVEMQGDEMTR 2 Oxidation (M) 1854.8452 0.8451622 364 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 0 0 2 1 By MS/MS By matching 4.67 0.471 1 2 2 1 32.801 32.845 3 0.011782 7553 20211116_3431_TMUAki_TMT10x_P_F4 45.82 34.549 177120 269080 0 341950 600760 483520 250360 206720 313720 222330 314890 164910 251350 19853 345810 567180 477630 274240 224620 316430 216500 303730 1 1 0 1 1 1 1 1 1 1 1 177120 269080 0 341950 600760 483520 250360 206720 313720 222330 314890 164910 251350 19853 345810 567180 477630 274240 224620 316430 216500 303730 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78389000 73621000 4768400 10226 364 9505 54275;54276;54277 65747 65747 284;285 1 KISIPVDISDSDMMLNIINSSITTK 2 Oxidation (M) 2766.4031 0.4030978 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 2 1 By MS/MS 1 0 1 1 77.075 77.012 4 0.0024402 26996 20211116_3439_TMUAki_TMT10x_S_F1 53.705 40.776 3365900 5602700 99076 5766200 3981800 3221400 3914200 2930400 3162500 3313500 3859400 3134700 5228500 380020 5832900 3822200 3432200 3950700 3005600 3275000 3220400 3701500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3365900 5602700 99076 5766200 3981800 3221400 3914200 2930400 3162500 3313500 3859400 3134700 5228500 380020 5832900 3822200 3432200 3950700 3005600 3275000 3220400 3701500 1 1 1 1 1 1 1 1 1 1 1 352840000 0 352840000 10227 1094 9506 54278 65748 65748 1444;1445 1 KISLEDIQAFEK Unmodified 1419.7609 0.76094551 2326 Q8WXX5 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 64.534 65.072 3 2.5693E-06 21448 20211116_3435_TMUAki_TMT10x_P_F7 116.96 94.428 29160000 48147000 76799 51889000 35909000 43568000 32630000 38536000 38023000 37701000 39932000 27151000 44940000 2491800 52547000 34347000 44784000 33437000 39409000 38513000 36855000 38462000 3 3 1 3 3 3 3 3 3 3 3 11445000 17625000 0 18637000 17167000 26638000 14470000 15237000 14434000 14378000 14883000 10656000 16450000 998230 19061000 16391000 26387000 14817000 16041000 14701000 14078000 14343000 1 1 0 1 1 1 1 1 1 1 1 17715000 30522000 76799 33252000 18742000 16930000 18161000 23299000 23589000 23323000 25049000 16495000 28490000 1493600 33486000 17956000 18397000 18619000 23368000 23812000 22777000 24119000 2 2 1 2 2 2 2 2 2 2 2 2339100000 1364300000 974770000 10228 2326 9507 54279;54280;54281 65749;65750;65751;65752 65750 4 KISSIQSIVPALEIANAHR Unmodified 2046.1586 0.15857291 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 2.75 1.09 2 3 3 4 7 5 63.502 63.329 3;4 3.7497E-24 19701 20211116_3440_TMUAki_TMT10x_S_F2 172.95 160.57 121820000 185230000 1400000 197740000 121440000 167300000 123220000 94742000 92053000 96856000 122630000 113430000 172880000 10270000 200380000 116520000 170680000 123930000 100050000 96097000 94508000 117350000 19 19 10 19 19 19 19 19 19 19 19 90659000 132970000 905520 143330000 91877000 137400000 91778000 66712000 63530000 67422000 87100000 84414000 124120000 7695700 145400000 88104000 138750000 92225000 71417000 66703000 65818000 83293000 11 11 5 11 11 11 11 11 11 11 11 31161000 52252000 494490 54404000 29562000 29892000 31446000 28030000 28523000 29435000 35526000 29018000 48765000 2574300 54983000 28421000 31922000 31708000 28635000 29394000 28690000 34054000 8 8 5 8 8 8 8 8 8 8 8 71249000000 39425000000 31823000000 10229 613 9508 54282;54283;54284;54285;54286;54287;54288;54289;54290;54291;54292;54293 65753;65754;65755;65756;65757;65758;65759;65760;65761;65762;65763;65764;65765;65766;65767;65768;65769;65770;65771;65772 65766 20 KISSPTGSK Unmodified 903.50255 0.50254598 2593 Q99623;Q99623-2 PHB2 Prohibitin-2 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 30.894 30.918 3 0.0020965 8303 20211116_3439_TMUAki_TMT10x_S_F1 72.652 42.334 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10230 2593 9509 54294;54295 65773;65774 65774 2 KISTVVSSK Unmodified 947.56515 0.56514624 962 P37108 SRP14 Signal recognition particle 14 kDa protein yes yes 0 0 0 1 By MS/MS 2 1 1 1 2 36.516 36.363 3 1.2173E-05 11543 20211116_3441_TMUAki_TMT10x_S_F3 118.9 71.644 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10231 962 9510 54296;54297 65775;65776 65776 2 KITAASK Unmodified 717.43849 0.43848916 1145 P50914 RPL14 60S ribosomal protein L14 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 30.514 30.547 3 0.032283 8184 20211116_3439_TMUAki_TMT10x_S_F1 65.305 23.196 517380 851920 10998 652370 622010 790030 566330 484840 584060 480770 655090 481810 794180 53920 681680 595640 789480 577910 508230 595920 469720 629740 2 2 1 2 2 2 2 2 2 2 2 216200 372050 10998 281200 327070 461630 270340 223050 268330 209880 294850 201390 346820 29727 295980 312850 453790 277120 238430 274010 205520 283610 1 1 1 1 1 1 1 1 1 1 1 301180 479860 0 371170 294940 328400 295990 261790 315720 270890 360240 280420 447360 24193 385690 282780 335690 300790 269810 321910 264200 346140 1 1 0 1 1 1 1 1 1 1 1 9614800 4286000 5328800 10232 1145 9511 54298;54299 65777;65778 65778 2 KITEAIGIISK Unmodified 1171.7176 0.71762413 1754 Q15021 NCAPD2 Condensin complex subunit 1 yes yes 0 0 0 1 By MS/MS 2 0 1 1 58.377 58.12 3 5.7629E-06 18904 20211116_3429_TMUAki_TMT10x_P_F2 105.14 68.615 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10233 1754 9512 54300 65779 65779 1 KITIADCGQLE Unmodified 1246.6227 0.62273747 1385 P62937;P62937-2 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 0 0 0 1 By MS/MS By MS/MS 4.25 1.76 1 4 4 4 4 4 3 12 12 50.357 50.452 2;3 7.368E-05 13679 20211116_3444_TMUAki_TMT10x_S_F5 99.522 90.659 95434000 142550000 347510 181650000 182210000 153900000 102370000 119990000 121080000 93404000 126490000 88856000 133160000 8757400 182130000 172680000 157730000 108590000 122920000 122550000 92318000 121860000 23 23 10 23 23 23 23 23 23 23 23 53539000 77817000 197610 100270000 141620000 123940000 69440000 66072000 67560000 51458000 68483000 49848000 72696000 5477000 101060000 133960000 123500000 74152000 69660000 68846000 50858000 66034000 11 11 4 11 11 11 11 11 11 11 11 41895000 64731000 149900 81372000 40590000 29954000 32932000 53922000 53518000 41946000 58011000 39007000 60463000 3280400 81069000 38715000 34225000 34442000 53256000 53704000 41460000 55822000 12 12 6 12 12 12 12 12 12 12 12 41756000000 24199000000 17557000000 10234 1385 9513 54301;54302;54303;54304;54305;54306;54307;54308;54309;54310;54311;54312;54313;54314;54315;54316;54317;54318;54319;54320;54321;54322;54323;54324 65780;65781;65782;65783;65784;65785;65786;65787;65788;65789;65790;65791;65792;65793;65794;65795;65796;65797;65798;65799;65800;65801;65802;65803;65804 65800 25 KITIGQAPTEK Unmodified 1184.6765 0.6764876 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 38.769 39.114 3 5.4935E-05 9139 20211116_3447_TMUAki_TMT10x_S_F8 92.151 71.374 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10235 629 9514 54325;54326;54327 65805;65806;65807 65807 3 KITVPGNFQGHSGAQCITCSYK Unmodified 2452.1627 0.16274837 1550 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.89 0.737 3 4 2 5 4 47.006 46.893 4;5 5.8466E-27 14711 20211116_3430_TMUAki_TMT10x_P_F3 173.18 164.58 43350000 75207000 486680 86997000 65910000 79039000 46405000 64579000 50700000 61335000 63303000 40365000 70220000 4057500 87800000 62717000 80686000 48223000 66292000 51838000 60037000 60676000 10 10 7 10 10 10 10 10 10 10 10 19453000 32982000 290670 39024000 45825000 60781000 32091000 29817000 24081000 28817000 28096000 18113000 30798000 2076400 39710000 43600000 59882000 33021000 31848000 24991000 28185000 26979000 5 5 3 5 5 5 5 5 5 5 5 23897000 42225000 196010 47973000 20085000 18258000 14314000 34762000 26619000 32519000 35207000 22251000 39422000 1981100 48090000 19117000 20804000 15202000 34443000 26847000 31852000 33697000 5 5 4 5 5 5 5 5 5 5 5 8606500000 5304600000 3301900000 10236 1550 9515 54328;54329;54330;54331;54332;54333;54334;54335;54336 65808;65809;65810;65811;65812;65813;65814;65815;65816;65817 65809 10 KITVVPSAK Unmodified 941.59097 0.59096706 2735 Q9BZE4 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 0 0 0 1 By MS/MS 3 0 1 1 39.483 39.196 3 0.0017542 12707 20211116_3441_TMUAki_TMT10x_S_F3 75.229 41.043 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10237 2735 9516 54337 65818 65818 1 KIVDQIRPDR Unmodified 1238.7095 0.70951906 710;2368 P17844;P17844-2;Q92841;Q92841-3;Q92841-1;Q92841-2 DDX5;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 no no 0 0 0 2 By MS/MS By MS/MS 1 0 4 2 2 33.455 33.46 3;4 2.7283E-08 9307 20211116_3439_TMUAki_TMT10x_S_F1 162.26 119.92 3625000 5768700 40647 5027100 5288100 4953000 4417600 3515700 3715600 3354900 4395300 3375500 5380000 361710 5179700 5051100 5018000 4504800 3642300 3834800 3283200 4219000 4 4 4 4 4 4 4 4 4 4 4 1801600 2720500 24156 2364800 3249600 3172600 2128400 1717000 1862700 1643300 2137700 1677700 2537200 192160 2449700 3089200 3149500 2209400 1816900 1916400 1607900 2053700 2 2 2 2 2 2 2 2 2 2 2 1823400 3048200 16491 2662300 2038500 1780400 2289200 1798800 1852800 1711600 2257600 1697800 2842800 169550 2730000 1961900 1868500 2295400 1825300 1918400 1675300 2165300 2 2 2 2 2 2 2 2 2 2 2 207860000 82937000 124920000 10238 710;2368 9517 54338;54339;54340;54341 65819;65820;65821;65822 65822 4 KIVITDCGQLS Unmodified 1232.6435 0.64347291 871 P30405 PPIF Peptidyl-prolyl cis-trans isomerase F, mitochondrial yes yes 0 0 0 1 By MS/MS 6 0 1 1 50.994 51.136 3 0.0037329 14261 20211116_3445_TMUAki_TMT10x_S_F6 69.721 49.391 1501500 2401600 23045 2511100 1738900 1317300 1276400 1976700 1747900 1863900 2037800 1398300 2241400 149290 2536200 1657100 1430400 1333500 1973100 1767900 1825000 1956800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1501500 2401600 23045 2511100 1738900 1317300 1276400 1976700 1747900 1863900 2037800 1398300 2241400 149290 2536200 1657100 1430400 1333500 1973100 1767900 1825000 1956800 1 1 1 1 1 1 1 1 1 1 1 174550000 0 174550000 10239 871 9518 54342 65823 65823 1 KIVLRLECVEPNCR Unmodified 1784.9389 0.93894343 1450 Q969Q0;P83881 RPL36AL;RPL36A 60S ribosomal protein L36a-like;60S ribosomal protein L36a yes no 0 0 0 2 By matching By MS/MS 2 0 2 1 1 46.769 46.599 4 0.0010361 12915 20211116_3440_TMUAki_TMT10x_S_F2 78.081 60.38 779710 1260400 28416 1588300 1140900 590410 690420 1118700 1161700 854090 1209100 726200 1177300 96185 1582300 1084400 674900 738460 1102800 1162900 845050 1164900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 779710 1260400 28416 1588300 1140900 590410 690420 1118700 1161700 854090 1209100 726200 1177300 96185 1582300 1084400 674900 738460 1102800 1162900 845050 1164900 1 1 1 1 1 1 1 1 1 1 1 200040000 91129000 108910000 10240 1450 9519 54343;54344 65824 65824 1 KIWCFGPDGTGPNILTDITK Unmodified 2232.1249 0.12488952 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 1 By MS/MS By MS/MS 2.22 0.786 2 3 4 2 7 79.487 79.442 3;4 6.286E-18 26821 20211116_3429_TMUAki_TMT10x_P_F2 141.83 127.81 80304000 125280000 54136 137540000 65538000 81507000 96995000 30680000 23333000 41656000 75927000 74763000 116940000 5470100 138610000 63568000 85348000 94461000 34087000 28827000 40231000 71616000 9 9 2 9 9 9 9 9 9 9 9 39948000 59442000 39825 61856000 33112000 47136000 45990000 13206000 11250000 19043000 35008000 37191000 55475000 2703500 62712000 32039000 48165000 44901000 15314000 13808000 18358000 33036000 4 4 1 4 4 4 4 4 4 4 4 40356000 65834000 14312 75688000 32426000 34370000 51006000 17473000 12083000 22613000 40919000 37571000 61467000 2766600 75901000 31528000 37183000 49561000 18772000 15019000 21873000 38581000 5 5 1 5 5 5 5 5 5 5 5 11399000000 5133000000 6266000000 10241 653 9520 54345;54346;54347;54348;54349;54350;54351;54352;54353 65825;65826;65827;65828;65829;65830;65831;65832;65833;65834;65835 65827 11 KIYQNIQDGSLDLNAAESGVQHKPSAPQGGR Unmodified 3277.644 0.64396528 1295 P61106 RAB14 Ras-related protein Rab-14 yes yes 0 0 0 2 By MS/MS 7.5 0.5 1 1 2 49.899 50.091 5 9.4162E-36 13641 20211116_3447_TMUAki_TMT10x_S_F8 175.39 166.43 4162400 7231000 1663.6 7195300 3811900 3770400 2570500 4494100 4916600 4732300 5314500 3874900 6747200 256250 7291700 3618400 4068600 2744900 4539900 4913300 4612000 5114300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4162400 7231000 1663.6 7195300 3811900 3770400 2570500 4494100 4916600 4732300 5314500 3874900 6747200 256250 7291700 3618400 4068600 2744900 4539900 4913300 4612000 5114300 2 2 1 2 2 2 2 2 2 2 2 1721100000 0 1721100000 10242 1295 9521 54354;54355 65836;65837 65836 2 KKDELER Unmodified 916.49779 0.49779495 1055 P46782 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes yes 0 0 0 2 By MS/MS 4.33 0.471 2 1 3 28.119 28.127 3;4 0.065339 6011 20211116_3433_TMUAki_TMT10x_P_F5 63.816 27.421 753830 1150900 5981.2 961960 694460 1121300 713700 535770 594910 549020 788560 701930 1073200 67240 997080 666720 1119300 719250 574680 617280 535660 754700 2 2 2 2 2 2 2 2 2 2 2 753830 1150900 5981.2 961960 694460 1121300 713700 535770 594910 549020 788560 701930 1073200 67240 997080 666720 1119300 719250 574680 617280 535660 754700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 53210000 53210000 0 10243 1055 9522 54356;54357;54358 65838;65839 65839 2 KKDLSLEEIQK Unmodified 1329.7504 0.75038083 698;2389 P16949;P16949-2;Q93045;Q93045-2 STMN1;STMN2 Stathmin;Stathmin-2 no no 0 0 0 2 By MS/MS By MS/MS 7 0 2 1 1 43.456 43.971 4 2.2937E-05 13291 20211116_3446_TMUAki_TMT10x_S_F7 105.65 75.444 4480500 8594100 33907 6893900 12755000 11036000 7042700 9430100 12195000 8534300 9664000 4172000 8012900 516540 7215000 12088000 10951000 7601900 9642200 12091000 8371900 9400900 4 4 3 4 4 4 4 4 4 4 4 1999400 3866300 13898 3099500 9417400 7649500 4133200 4753200 5846900 3928900 4658900 1861800 3604800 282610 3284200 8897800 7447000 4521800 4954200 5831100 3871100 4531000 1 1 1 1 1 1 1 1 1 1 1 2481000 4727800 20009 3794500 3337400 3386800 2909400 4677000 6348400 4605400 5005200 2310200 4408000 233920 3930800 3190300 3504400 3080000 4688000 6260300 4500800 4869900 3 3 2 3 3 3 3 3 3 3 3 781160000 632140000 149020000 10244 698;2389 9523 54359;54360 65840;65841;65842;65843 65843 4 KKDQVTAQEIFQDNHEDGPTAK Unmodified 2498.2037 0.20374478 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 2 By MS/MS By MS/MS 5.75 1.16 2 3 4 2 1 10 2 41.66 41.811 4;5;6 2.2076E-35 11346 20211116_3433_TMUAki_TMT10x_P_F5 194.37 176.57 29222000 46402000 305080 55338000 77390000 80237000 43356000 62848000 68444000 51355000 50733000 27208000 43332000 2974000 56195000 73345000 79813000 46534000 64433000 67904000 50629000 49489000 14 14 4 14 14 14 14 14 14 14 14 21400000 33079000 275610 36842000 71133000 73531000 38004000 43082000 47456000 35419000 34894000 19926000 30880000 2464200 37868000 67376000 71961000 40574000 45110000 47419000 34908000 34050000 10 10 3 10 10 10 10 10 10 10 10 7822300 13323000 29469 18496000 6256800 6705600 5351200 19766000 20989000 15935000 15839000 7282400 12451000 509810 18327000 5968900 7852000 5959400 19323000 20485000 15721000 15439000 4 4 1 4 4 4 4 4 4 4 4 13845000000 11849000000 1995800000 10245 648 9524 54361;54362;54363;54364;54365;54366;54367;54368;54369;54370;54371;54372 65844;65845;65846;65847;65848;65849;65850;65851;65852;65853;65854;65855;65856;65857 65845 14 KKEGETVEPYK Unmodified 1306.6769 0.67688153 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 2 By MS/MS 5 0 1 1 32.631 32.571 4 0.054461 7749 20211116_3433_TMUAki_TMT10x_P_F5 51.218 26.426 421680 574180 4872.3 649740 804030 686460 456780 413320 492110 329220 539990 392660 536060 44856 658050 762500 690910 482580 431500 500790 325000 519430 1 1 1 1 1 1 1 1 1 1 1 421680 574180 4872.3 649740 804030 686460 456780 413320 492110 329220 539990 392660 536060 44856 658050 762500 690910 482580 431500 500790 325000 519430 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 41621000 41621000 0 10246 1546 9525 54373 65858 65858 1 KKEGVILTNESAASTGQPDNDVTEGQR Unmodified 2843.3897 0.38970765 1552 Q08J23;Q08J23-2;Q08J23-3 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 0 0 0 2 By MS/MS 5 0 1 1 38.299 38.445 4 8.0834E-110 8937 20211116_3444_TMUAki_TMT10x_S_F5 295.99 289.7 88524 130390 0 190980 51578 46082 52886 164320 211760 112560 163960 82410 121890 4972.6 188390 49368 58540 58494 159550 206780 112060 159650 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 88524 130390 0 190980 51578 46082 52886 164320 211760 112560 163960 82410 121890 4972.6 188390 49368 58540 58494 159550 206780 112060 159650 1 1 0 1 1 1 1 1 1 1 1 131590000 0 131590000 10247 1552 9526 54374 65859 65859 1 KKELEEIVQPIISK Unmodified 1652.9713 0.97127264 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 2 By MS/MS By MS/MS 6.29 2.25 1 1 3 2 4 3 62.845 63.134 3;4 5.4054E-09 19459 20211116_3436_TMUAki_TMT10x_P_F8 126.39 115.12 37215000 66325000 320310 58487000 69606000 96057000 54942000 76108000 72935000 66541000 64526000 34653000 61859000 3798800 60782000 66390000 95091000 57054000 78102000 73113000 65382000 62506000 8 8 6 8 8 8 8 8 8 8 8 25829000 45820000 228050 38973000 57057000 84021000 44183000 51469000 48939000 45519000 44242000 24051000 42729000 2752500 40916000 54396000 82085000 45637000 53795000 49412000 44701000 42824000 6 6 4 6 6 6 6 6 6 6 6 11386000 20505000 92261 19514000 12550000 12036000 10759000 24638000 23996000 21022000 20283000 10602000 19129000 1046300 19866000 11994000 13006000 11417000 24306000 23701000 20681000 19681000 2 2 2 2 2 2 2 2 2 2 2 7492000000 4987400000 2504600000 10248 614 9527 54375;54376;54377;54378;54379;54380;54381 65860;65861;65862;65863;65864;65865;65866;65867 65865 8 KKEPELFQTVAEGLR Unmodified 1743.9519 0.95193418 2809 Q9H4M9 EHD1 EH domain-containing protein 1 yes yes 0 0 0 2 By MS/MS 8 0 1 1 53.957 54.065 4 0.0020645 15783 20211116_3436_TMUAki_TMT10x_P_F8 65.716 55.058 3194600 5161800 692.73 4990600 4581000 6366000 4436900 4009100 3776600 3680500 4067800 2974500 4815900 284920 5123900 4388900 6347500 4487600 4185300 3881200 3608100 3915000 1 1 1 1 1 1 1 1 1 1 1 3194600 5161800 692.73 4990600 4581000 6366000 4436900 4009100 3776600 3680500 4067800 2974500 4815900 284920 5123900 4388900 6347500 4487600 4185300 3881200 3608100 3915000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 602060000 602060000 0 10249 2809 9528 54382 65868 65868 1 KKEPEPNFQLLDNPAR Unmodified 1894.9901 0.9901106 2575 Q99460;Q99460-2 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 0 2 By MS/MS By MS/MS 6.12 0.781 2 3 3 4 4 45.628 45.89 3;4 2.8909E-35 13634 20211116_3435_TMUAki_TMT10x_P_F7 204.13 191.93 35075000 58275000 846760 68909000 57648000 66050000 39510000 54572000 55032000 49575000 52333000 32664000 54417000 3943400 69505000 54867000 67206000 41506000 55915000 55210000 48624000 50567000 12 12 11 12 12 12 12 12 12 12 12 19138000 32096000 526830 37197000 44213000 53428000 30010000 29766000 29963000 28406000 28345000 17823000 29968000 2428800 37829000 42068000 52896000 31182000 31418000 30427000 27799000 27393000 7 7 7 7 7 7 7 7 7 7 7 15937000 26179000 319930 31712000 13436000 12623000 9499800 24805000 25068000 21169000 23988000 14841000 24449000 1514500 31676000 12799000 14310000 10324000 24497000 24783000 20825000 23174000 5 5 4 5 5 5 5 5 5 5 5 6606600000 4181600000 2425000000 10250 2575 9529 54383;54384;54385;54386;54387;54388;54389;54390 65869;65870;65871;65872;65873;65874;65875;65876;65877;65878;65879;65880;65881;65882 65876 14 KKEPVGDDESVPENVLSFDDLTADALANLK Unmodified 3228.6038 0.60378275 1107 P49591 SARS Serine--tRNA ligase, cytoplasmic yes yes 0 0 0 2 By MS/MS By MS/MS 4.5 1.5 1 1 2 2 1 1 6 2 78.503 78.498 4;5 0.0033726 27633 20211116_3430_TMUAki_TMT10x_P_F3 47.429 39.959 16976000 29615000 229900 27664000 24826000 37488000 24870000 25661000 33075000 25982000 27814000 15807000 27627000 1068900 28507000 23810000 37319000 25479000 26697000 33102000 25362000 26994000 4 4 2 4 4 4 4 4 4 4 4 11549000 20197000 229900 18775000 14169000 30758000 16709000 16859000 22145000 17035000 18280000 10754000 18841000 1068900 19433000 13655000 30283000 16985000 17848000 22154000 16630000 17754000 3 3 2 3 3 3 3 3 3 3 3 5427300 9418200 0 8889600 10656000 6729900 8161000 8801600 10929000 8946300 9533700 5053300 8786200 0 9073900 10155000 7035800 8494200 8848600 10948000 8731500 9240100 1 1 0 1 1 1 1 1 1 1 1 7485300000 5789100000 1696200000 10251 1107 9530 54391;54392;54393;54394;54395;54396;54397;54398 65883;65884;65885 65884 3 KKGPLVFGEPIAASLGTDGTHYWSK Unmodified 2658.3806 0.38058694 1691 Q14194-2;Q14194 CRMP1 Dihydropyrimidinase-related protein 1 yes no 0 0 0 2 By MS/MS By MS/MS 3 0 2 1 1 64.59 64.222 5 1.0102E-07 21890 20211116_3430_TMUAki_TMT10x_P_F3 90.836 79.933 10137000 17894000 67612 14182000 13922000 18257000 12641000 13506000 10046000 11460000 13172000 9439100 16684000 956460 14791000 13321000 18241000 12809000 13911000 10445000 11276000 12610000 2 2 2 2 2 2 2 2 2 2 2 5331300 9561200 56787 7985600 7396200 13463000 7826400 7152200 4883700 5807000 6583200 4964400 8915700 523850 8339900 7106100 13236000 7825000 7550100 5157400 5726800 6298000 1 1 1 1 1 1 1 1 1 1 1 4805700 8333300 10826 6196600 6526000 4793500 4814700 6354200 5162700 5652500 6588500 4474700 7767800 432610 6451400 6215000 5004900 4984000 6360800 5287500 5549500 6311500 1 1 1 1 1 1 1 1 1 1 1 2018600000 951550000 1067000000 10252 1691 9531 54399;54400 65886;65887 65886 2 KKHPDASVNFSEFSK Unmodified 1719.858 0.8580338 574 P09429 HMGB1 High mobility group protein B1 yes yes 0 0 0 2 By MS/MS By MS/MS 5 3.29 2 1 2 3 2 39.937 40.088 3;4 5.8968E-25 10075 20211116_3436_TMUAki_TMT10x_P_F8 198.85 96.21 3869300 5396300 70958 9644500 5060200 5214500 2755400 3612300 3887900 3531800 4891900 3603200 5051200 397470 9472700 4797900 5549400 2950500 3751200 3941400 3452700 4688000 4 4 3 4 4 4 4 4 4 4 4 2192900 2960600 47310 5717300 3979300 4179600 1538100 1734000 1957300 1784300 2592900 2042200 2772900 250920 5614900 3757100 4297800 1700800 1887900 1995400 1740600 2481600 2 2 2 2 2 2 2 2 2 2 2 1676400 2435700 23649 3927200 1080900 1034900 1217300 1878300 1930600 1747500 2299000 1561100 2278300 146550 3857800 1040900 1251700 1249800 1863200 1945900 1712100 2206400 2 2 1 2 2 2 2 2 2 2 2 1114400000 373680000 740760000 10253 574 9532 54401;54402;54403;54404;54405 65888;65889;65890;65891 65889 4 KKHPDSSVNFAEFSK Unmodified 1719.858 0.8580338 817 P26583 HMGB2 High mobility group protein B2 yes yes 0 0 0 2 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 39.782 40.085 4;5 3.08E-10 9828 20211116_3436_TMUAki_TMT10x_P_F8 139.21 60.206 3188200 4916800 34646 6580500 5861000 5193100 3407900 4172700 4420100 3737200 4722500 2968800 4594100 326050 6574900 5559700 5353100 3616400 4281000 4463100 3667900 4546300 4 4 3 4 4 4 4 4 4 4 4 1550300 2238400 14207 2681300 4407800 3776500 2059400 1800900 1778500 1662400 2055800 1443600 2090300 173800 2720500 4167700 3735300 2203000 1926600 1831400 1629300 1974600 3 3 2 3 3 3 3 3 3 3 3 1637900 2678400 20439 3899100 1453200 1416700 1348500 2371900 2641600 2074800 2666700 1525200 2503800 152260 3854400 1392000 1617800 1413400 2354500 2631700 2038600 2571700 1 1 1 1 1 1 1 1 1 1 1 2831700000 1788100000 1043700000 10254 817 9533 54406;54407;54408 65892;65893;65894;65895 65893 4 KKIEEAMDGSETPQLFTVLPEK Unmodified 2489.2723 0.27234162 1633 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 0 2 By MS/MS 7 0 1 1 67.834 68.365 4 0.074454 22874 20211116_3435_TMUAki_TMT10x_P_F7 38.237 26.606 2890800 4955700 125450 4897100 3778900 5801700 3735500 2878600 2566900 2830200 3501100 2692600 4624000 369020 5013500 3629900 5788900 3755200 3072800 2695700 2766100 3348500 1 1 1 1 1 1 1 1 1 1 1 2890800 4955700 125450 4897100 3778900 5801700 3735500 2878600 2566900 2830200 3501100 2692600 4624000 369020 5013500 3629900 5788900 3755200 3072800 2695700 2766100 3348500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 476940000 476940000 0 10255 1633 9534 54409 65896 65896 1 KKIEQQGGFTFENK Unmodified 1652.8522 0.85222014 189 O15397;O15397-2 IPO8 Importin-8 yes no 0 0 0 2 By MS/MS By MS/MS 8 0 2 1 1 42.01 42.14 4 0.0021474 10395 20211116_3447_TMUAki_TMT10x_S_F8 71.08 47.942 1945900 3151800 2458.2 3242900 3232200 3183000 2180600 2060100 1990000 1833100 2615700 1811800 2941300 173840 3301000 3072400 3221100 2261000 2144500 2055000 1799700 2503900 2 2 1 2 2 2 2 2 2 2 2 1250500 2053900 0 2073200 2530300 2652500 1555500 1321100 1303300 1264000 1753100 1164300 1916600 113800 2122300 2401200 2636500 1621000 1408700 1352800 1236900 1677300 1 1 0 1 1 1 1 1 1 1 1 695350 1097900 2458.2 1169700 701930 530560 625110 738990 686710 569100 862600 647460 1024700 60032 1178700 671260 584610 640000 735750 702160 562810 826680 1 1 1 1 1 1 1 1 1 1 1 185180000 131260000 53917000 10256 189 9535 54410;54411 65897;65898 65898 2 KKLVIVGDGACGK Unmodified 1343.7595 0.75950572 1314;549 P08134;P61586 RHOC;RHOA Rho-related GTP-binding protein RhoC;Transforming protein RhoA no no 0 0 0 2 By MS/MS By MS/MS 2 0 2 1 1 40.589 40.49 4 0.038054 10303 20211116_3440_TMUAki_TMT10x_S_F2 50.843 28.97 1617100 2390400 986.52 2568100 2490900 2550900 1660600 1796700 1829800 1641800 2141300 1505400 2231200 116240 2607000 2365600 2582800 1733000 1860200 1865100 1609900 2056000 2 2 1 2 2 2 2 2 2 2 2 1182600 1626900 0 1744100 2061600 2154800 1277200 1210500 1239500 1090200 1469200 1100800 1518500 79364 1777100 1955000 2148600 1335400 1274800 1270800 1069700 1410200 1 1 0 1 1 1 1 1 1 1 1 434530 763550 986.52 823960 429320 396080 383340 586220 590290 551630 672050 404600 712700 36872 829910 410560 434170 397650 585400 594360 540170 645770 1 1 1 1 1 1 1 1 1 1 1 116300000 89371000 26928000 10257 549;1314 9536 54412;54413 65899;65900 65900 2 KKNEPEDEEEEEEEEDEDEEEEDEDEE Unmodified 3383.1976 0.19757291 817 P26583 HMGB2 High mobility group protein B2 yes yes 0 0 0 2 By MS/MS By matching 1 0 2 1 1 37.148 37.106 4 1.3923E-12 8788 20211116_3428_TMUAki_TMT10x_P_F1 115.88 115.87 133240 177550 16964 731400 1936300 1152000 419850 227680 639560 102440 471610 124190 167750 52109 713320 1819500 1126900 511960 274390 635070 105210 460150 1 1 1 1 1 1 1 1 1 1 1 133240 177550 16964 731400 1936300 1152000 419850 227680 639560 102440 471610 124190 167750 52109 713320 1819500 1126900 511960 274390 635070 105210 460150 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 111410000 85715000 25694000 10258 817 9537 54414;54415 65901 65901 1 KKNPEVPVNFAEFSK Unmodified 1732.9148 0.91482039 182 O15347 HMGB3 High mobility group protein B3 yes yes 0 0 0 2 By MS/MS By MS/MS 5.2 3.06 1 1 1 2 3 2 52.391 52.417 4 5.7263E-19 15093 20211116_3436_TMUAki_TMT10x_P_F8 160.48 141.88 18590000 30803000 418770 35866000 26714000 30898000 20466000 20361000 21662000 20639000 25502000 17312000 28761000 2007500 36158000 25480000 31547000 21123000 21241000 22121000 20146000 24482000 5 5 4 5 5 5 5 5 5 5 5 11175000 18640000 387980 21029000 21790000 26193000 16192000 13446000 14381000 13391000 16673000 10408000 17402000 1436800 21362000 20776000 26078000 16661000 14312000 14791000 13080000 16013000 3 3 3 3 3 3 3 3 3 3 3 7415000 12163000 30793 14837000 4923700 4705300 4274200 6914800 7281000 7248700 8829400 6904000 11359000 570740 14796000 4704100 5468100 4462500 6929000 7330500 7065700 8469500 2 2 1 2 2 2 2 2 2 2 2 2490800000 1408800000 1081900000 10259 182 9538 54416;54417;54418;54419;54420 65902;65903;65904;65905;65906 65904 5 KKPALVSIPEDVVQAEAGGMHTVCLSK Oxidation (M) 2879.4885 0.48849918 723 P18754;P18754-2 RCC1 Regulator of chromosome condensation yes no 0 0 1 2 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 59.692 59.663 5 9.1273E-09 17434 20211116_3447_TMUAki_TMT10x_S_F8 93.093 83.123 17161000 27101000 84620 25085000 18311000 37077000 24777000 28610000 27070000 27310000 21367000 15977000 25280000 746100 25913000 17711000 36842000 24865000 29477000 27237000 26726000 20789000 4 4 2 4 4 4 4 4 4 4 4 11059000 18090000 84620 17439000 11301000 29479000 17661000 17603000 19469000 19412000 13411000 10297000 16877000 439250 18017000 11001000 29022000 17638000 18551000 19512000 18884000 13125000 3 3 2 3 3 3 3 3 3 3 3 6102100 9011100 0 7646500 7009200 7597600 7115300 11007000 7601100 7897900 7956300 5680000 8403200 306850 7896300 6709600 7819500 7226800 10926000 7724200 7841500 7664100 1 1 0 1 1 1 1 1 1 1 1 6228100000 3743500000 2484600000 10260 723 9539 54421;54422;54423;54424 65907;65908;65909;65910 65910 831 4 KKPALVSIPEDVVQAEAGGMHTVCLSK Unmodified 2863.4936 0.49358456 723 P18754;P18754-2 RCC1 Regulator of chromosome condensation yes no 0 0 0 2 By matching By MS/MS 8 0 2 1 1 64.457 64.53 5 2.2355E-12 19520 20211116_3447_TMUAki_TMT10x_S_F8 109.97 104.48 3498900 5154900 0 6019000 3813200 2771900 4153500 3116600 2258500 2959400 3790900 3257200 4813300 219340 6030700 3659900 3031900 4136600 3146700 2434900 2896800 3609500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3498900 5154900 0 6019000 3813200 2771900 4153500 3116600 2258500 2959400 3790900 3257200 4813300 219340 6030700 3659900 3031900 4136600 3146700 2434900 2896800 3609500 1 1 0 1 1 1 1 1 1 1 1 2325400000 1234100000 1091300000 10261 723 9539 54425;54426 65911 65911 1 KKPFVYTQGQAVLNR Unmodified 1747.9733 0.97333832 2806 Q9H4A4 RNPEP Aminopeptidase B yes yes 0 0 0 2 By MS/MS 6 0 1 1 41.52 41.685 4 1.9286E-06 10427 20211116_3445_TMUAki_TMT10x_S_F6 110.44 99.383 2652500 4416600 75623 5125300 2494600 2081100 2234200 3538600 3529200 3345200 3671900 2470300 4123800 288180 5133100 2389900 2340600 2319900 3518500 3538800 3275100 3537700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2652500 4416600 75623 5125300 2494600 2081100 2234200 3538600 3529200 3345200 3671900 2470300 4123800 288180 5133100 2389900 2340600 2319900 3518500 3538800 3275100 3537700 2 2 2 2 2 2 2 2 2 2 2 189200000 0 189200000 10262 2806 9540 54427 65912;65913 65912 2 KKPLDGEYFTLQIR Unmodified 1706.9356 0.93555583 491 P04637;P04637-4;P04637-7 TP53 Cellular tumor antigen p53 yes no 0 0 0 2 By MS/MS By MS/MS 1.75 0.433 1 3 3 1 54.857 54.681 3;4 1.1685E-18 16257 20211116_3440_TMUAki_TMT10x_S_F2 162.7 152.22 29717000 45668000 142190 46588000 36573000 49056000 33952000 35003000 34903000 33730000 38897000 27669000 42616000 2456500 47499000 34996000 49507000 34605000 36260000 35608000 32995000 37399000 7 7 4 7 7 7 7 7 7 7 7 16386000 23422000 23132 22494000 21781000 35155000 19450000 17646000 18258000 17550000 20492000 15255000 21852000 1219900 23203000 20812000 34639000 19814000 18822000 18705000 17144000 19699000 4 4 1 4 4 4 4 4 4 4 4 13332000 22246000 119060 24094000 14792000 13901000 14502000 17357000 16645000 16180000 18405000 12414000 20765000 1236700 24297000 14183000 14868000 14791000 17438000 16902000 15851000 17701000 3 3 3 3 3 3 3 3 3 3 3 4076800000 2800400000 1276400000 10263 491 9541 54428;54429;54430;54431 65914;65915;65916;65917;65918;65919;65920 65918 7 KKPPVATEGESALNFNLFEK Unmodified 2218.1634 0.16338352 2081 Q7Z478 DHX29 ATP-dependent RNA helicase DHX29 yes yes 0 0 0 2 By MS/MS 8 0 1 1 62.556 62.561 4 0.00020377 18686 20211116_3447_TMUAki_TMT10x_S_F8 66.874 54.196 1969600 3697600 73849 3471700 2246100 2094700 2173000 2921600 2533800 2511500 2760700 1834400 3449400 235990 3537000 2156300 2237400 2219200 2916400 2569900 2469800 2656100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1969600 3697600 73849 3471700 2246100 2094700 2173000 2921600 2533800 2511500 2760700 1834400 3449400 235990 3537000 2156300 2237400 2219200 2916400 2569900 2469800 2656100 1 1 1 1 1 1 1 1 1 1 1 491190000 0 491190000 10264 2081 9542 54432 65921 65921 1 KKQEQLTPGVVYVR Unmodified 1643.9359 0.93589019 2730 Q9BYG3 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes yes 0 0 0 2 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 38.188 38.077 4 6.0355E-14 10724 20211116_3429_TMUAki_TMT10x_P_F2 153.2 130.48 1335300 2122200 15319 2360800 4063000 3606200 1872600 2767200 2738400 2002700 2411500 1243400 1981100 161000 2410100 3841500 3578100 2040800 2833000 2736400 1987400 2336400 3 3 2 3 3 3 3 3 3 3 3 895650 1363000 15319 1548900 3635900 3243600 1550200 1973300 1898600 1439600 1633900 834050 1272500 126910 1592400 3434800 3171300 1692300 2054400 1906900 1428000 1584400 2 2 2 2 2 2 2 2 2 2 2 439670 759200 0 811850 427080 362620 322380 793940 839780 563060 777600 409360 708620 34085 817790 406730 406820 348490 778540 829490 559430 752050 1 1 0 1 1 1 1 1 1 1 1 319820000 277740000 42082000 10265 2730 9543 54433;54434;54435 65922;65923;65924 65923 3 KKVDDDLGTIESLEEAK Unmodified 1888.963 0.96295238 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 2 By MS/MS By MS/MS 3.5 0.957 1 2 2 1 3 3 58.962 58.85 4 3.0051E-21 18495 20211116_3442_TMUAki_TMT10x_S_F4 164.62 147.54 23078000 38983000 721590 41187000 32259000 40212000 25850000 32360000 31442000 30111000 33203000 21493000 36384000 2620400 41848000 30807000 40849000 26729000 33231000 31804000 29500000 31975000 7 7 5 7 7 7 7 7 7 7 7 12299000 19874000 460990 21313000 22533000 30540000 16891000 17517000 17288000 16476000 16915000 11454000 18550000 1505400 21779000 21486000 30251000 17440000 18436000 17557000 16134000 16329000 3 3 2 3 3 3 3 3 3 3 3 10779000 19109000 260600 19875000 9725300 9671300 8959600 14843000 14154000 13635000 16288000 10038000 17834000 1115000 20069000 9321200 10598000 9288900 14794000 14248000 13366000 15646000 4 4 3 4 4 4 4 4 4 4 4 2671000000 1743300000 927690000 10266 935 9544 54436;54437;54438;54439;54440;54441 65925;65926;65927;65928;65929;65930;65931 65930 7 KKVEEVLEEEEEEYVVEK Unmodified 2236.0998 0.099839789 1451 P83916 CBX1 Chromobox protein homolog 1 yes yes 0 0 0 2 By MS/MS By MS/MS 1.71 1.03 4 2 1 3 4 65.79 65.621 3;4 7.4993E-31 22375 20211116_3439_TMUAki_TMT10x_S_F1 181.41 162.87 73972000 126020000 218330 115590000 82854000 119020000 81535000 76829000 83104000 80919000 83554000 68876000 117550000 4615500 118710000 79415000 120090000 82822000 80366000 84491000 78861000 80588000 12 12 5 12 12 12 12 12 12 12 12 44585000 73534000 60765 64598000 52056000 88633000 50950000 46107000 48343000 46541000 46833000 41514000 68582000 2100500 66891000 49886000 87855000 51658000 49037000 49241000 45437000 45225000 5 5 1 5 5 5 5 5 5 5 5 29387000 52488000 157570 50992000 30798000 30386000 30585000 30722000 34761000 34377000 36721000 27362000 48971000 2515000 51818000 29529000 32234000 31164000 31329000 35250000 33424000 35363000 7 7 4 7 7 7 7 7 7 7 7 18536000000 10711000000 7824800000 10267 1451 9545 54442;54443;54444;54445;54446;54447;54448 65932;65933;65934;65935;65936;65937;65938;65939;65940;65941;65942;65943 65938 12 KKVTLGTQPTVLR Unmodified 1439.8824 0.88239805 1847 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 2 By MS/MS 5 0 1 1 37.32 37.482 4 0.0019105 8529 20211116_3444_TMUAki_TMT10x_S_F5 75.316 63.784 439000 738670 6675.6 900830 429290 382300 426360 500330 514700 456930 656280 408800 689860 42482 899790 411950 424100 435370 501440 524770 448050 628700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 439000 738670 6675.6 900830 429290 382300 426360 500330 514700 456930 656280 408800 689860 42482 899790 411950 424100 435370 501440 524770 448050 628700 1 1 1 1 1 1 1 1 1 1 1 22728000 0 22728000 10268 1847 9546 54449 65944 65944 1 KKYPYWPHQPIENL Unmodified 1811.9359 0.93589019 372 O75947;O75947-2 ATP5H ATP synthase subunit d, mitochondrial yes no 0 0 0 2 By MS/MS 1 0 1 1 50.929 50.929 4 0.063389 14403 20211116_3428_TMUAki_TMT10x_P_F1 42.209 27.952 2399600 3758700 169580 4307200 4166500 4950500 3092700 3043700 3062100 2788100 3289000 2235600 3509300 381740 4364900 3978300 4960700 3192200 3183200 3124500 2733500 3165700 1 1 1 1 1 1 1 1 1 1 1 2399600 3758700 169580 4307200 4166500 4950500 3092700 3043700 3062100 2788100 3289000 2235600 3509300 381740 4364900 3978300 4960700 3192200 3183200 3124500 2733500 3165700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 333660000 333660000 0 10269 372 9547 54450 65945 65945 1 KLAADAGTFLSR Unmodified 1248.6826 0.68263561 3262 Q9Y371;Q9Y371-2 SH3GLB1 Endophilin-B1 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 49.144 49.144 3 6.8688E-06 13716 20211116_3428_TMUAki_TMT10x_P_F1 107.74 75.801 1919100 3102200 26039 3443500 4195100 4632500 2632900 2605600 2600200 2256100 2741100 1787100 2896000 215250 3506600 3984800 4600400 2751400 2741000 2651700 2217800 2639800 1 1 1 1 1 1 1 1 1 1 1 1919100 3102200 26039 3443500 4195100 4632500 2632900 2605600 2600200 2256100 2741100 1787100 2896000 215250 3506600 3984800 4600400 2751400 2741000 2651700 2217800 2639800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 256200000 256200000 0 10270 3262 9548 54451;54452 65946;65947 65946 2 KLAAQSCALSLVR Unmodified 1415.7919 0.79186849 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 1 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 47.242 47.266 3 7.6709E-23 13688 20211116_3442_TMUAki_TMT10x_S_F4 209.11 175.89 11031000 19885000 169160 22993000 21136000 17283000 11175000 16760000 17398000 14493000 18177000 10272000 18566000 1213700 23151000 20026000 17947000 12049000 16999000 17455000 14248000 17510000 6 6 6 6 6 6 6 6 6 6 6 4199900 7102000 95109 8539000 14137000 12471000 6479400 6461800 7037000 5591300 6878600 3911300 6632200 576020 8668400 13369000 12327000 6990000 6847100 7128900 5496600 6640400 2 2 2 2 2 2 2 2 2 2 2 6830700 12783000 74047 14454000 6999100 4812200 4696000 10298000 10361000 8901600 11298000 6360600 11934000 637680 14483000 6657700 5620300 5059100 10152000 10326000 8751300 10870000 4 4 4 4 4 4 4 4 4 4 4 855140000 367720000 487420000 10271 1546 9549 54453;54454;54455;54456;54457 65948;65949;65950;65951;65952;65953 65951 6 KLAATPK Unmodified 727.45922 0.4592246 534 P07305;P07305-2 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 31.91 31.846 3 0.004433 8235 20211116_3429_TMUAki_TMT10x_P_F2 94.114 43.988 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10272 534 9550 54458;54459;54460 65954;65955;65956 65955 3 KLAGANPAVITCDELLLGHEK Unmodified 2248.1886 0.18855241 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 1 By MS/MS 7 0 1 1 59.381 59.897 4 0.0051045 19886 20211116_3446_TMUAki_TMT10x_S_F7 58.107 43.185 6826800 12917000 80363 11181000 6915000 6072700 6917500 6768700 5233400 6011600 8246800 6357000 12047000 642120 11452000 6635400 6517100 6964500 6824200 5504700 5902400 7862100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6826800 12917000 80363 11181000 6915000 6072700 6917500 6768700 5233400 6011600 8246800 6357000 12047000 642120 11452000 6635400 6517100 6964500 6824200 5504700 5902400 7862100 1 1 1 1 1 1 1 1 1 1 1 696250000 0 696250000 10273 1433 9551 54461 65957 65957 1 KLALHSGMDYAIMTGGDVAPMGR 3 Oxidation (M) 2438.1392 0.13923573 2973;1941 Q9NVI7;Q9NVI7-2;Q9NVI7-3;Q5T9A4;Q5T9A4-3 ATAD3A;ATAD3B ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B no no 0 0 3 1 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 42.091 42.281 4 1.0459E-07 12357 20211116_3435_TMUAki_TMT10x_P_F7 92.792 85.84 860070 1459400 602.62 1576100 1791700 2142900 1373000 1867600 1996600 1404300 1383500 800790 1362200 82414 1608200 1707300 2141900 1433900 1898900 1982100 1390600 1353600 3 3 1 3 3 3 3 3 3 3 3 705790 1190600 0 1273500 1657400 1982000 1251800 1549600 1659300 1167700 1108700 657140 1111300 69341 1303900 1578900 1965800 1303600 1585900 1650700 1156200 1086600 2 2 0 2 2 2 2 2 2 2 2 154280 268850 602.62 302630 134270 160830 121210 318010 337270 236580 274830 143660 250990 13073 304220 128460 176120 130320 312960 331440 234410 267050 1 1 1 1 1 1 1 1 1 1 1 563840000 482780000 81061000 10274 2973;1941 9552 54462;54463;54464;54465 65958;65959;65960 65958 2526;2527;2528 3 KLAQQYYLVYQEPIPTAQLVQR Unmodified 2648.4326 0.43262251 807 P25787 PSMA2 Proteasome subunit alpha type-2 yes yes 0 0 0 1 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 69.503 69.206 4 1.632E-08 25051 20211116_3441_TMUAki_TMT10x_S_F3 101.17 92.072 2582500 5203000 14124 3953600 2682700 4845800 3257800 3534100 3291400 3179000 3434100 2404600 4850200 102230 4134900 2587600 4852100 3275500 3648800 3352100 3119400 3308300 2 2 1 2 2 2 2 2 2 2 2 1521000 3343800 0 2496100 1545500 3573200 2051700 2095100 1938800 1593600 2049300 1416200 3116900 0 2622400 1494600 3540400 2051100 2189800 1981200 1577000 1973500 1 1 0 1 1 1 1 1 1 1 1 1061500 1859200 14124 1457500 1137200 1272700 1206100 1438900 1352700 1585400 1384800 988460 1733300 102230 1512500 1093000 1311700 1224300 1459000 1370900 1542400 1334800 1 1 1 1 1 1 1 1 1 1 1 1734400000 781660000 952750000 10275 807 9553 54466;54467;54468 65961;65962 65962 2 KLASAAYPDPSK Unmodified 1246.6558 0.65575216 1219 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 38.425 38.775 3 0.0018482 8909 20211116_3447_TMUAki_TMT10x_S_F8 74.678 58.454 280980 466500 251.35 518210 309980 233510 311940 314050 342030 293510 403870 261630 435490 23936 520750 297280 257260 317240 314620 348840 287500 387690 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 280980 466500 251.35 518210 309980 233510 311940 314050 342030 293510 403870 261630 435490 23936 520750 297280 257260 317240 314620 348840 287500 387690 1 1 1 1 1 1 1 1 1 1 1 35498000 15013000 20486000 10276 1219 9554 54469;54470;54471 65963;65964 65964 2 KLASDAGIFFTR Unmodified 1324.7139 0.71393574 2922 Q9NR46;Q9NR46-2 SH3GLB2 Endophilin-B2 yes no 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 57.517 57.189 3 3.0572E-05 17222 20211116_3440_TMUAki_TMT10x_S_F2 88.768 59.421 2994000 4669200 58553 4848200 4058700 6324900 3777800 3611000 3805200 3677900 3641800 2788100 4357500 317700 4955400 3888200 6291300 3847500 3810300 3864100 3589200 3518200 1 1 1 1 1 1 1 1 1 1 1 2994000 4669200 58553 4848200 4058700 6324900 3777800 3611000 3805200 3677900 3641800 2788100 4357500 317700 4955400 3888200 6291300 3847500 3810300 3864100 3589200 3518200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 645640000 527420000 118220000 10277 2922 9555 54472;54473;54474 65965;65966 65966 2 KLASLTPGFSGADVANVCNEAALIAAR Unmodified 2715.4014 0.40139873 3305 Q9Y4W6 AFG3L2 AFG3-like protein 2 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 75.484 75.404 4 6.6297E-18 25909 20211116_3429_TMUAki_TMT10x_P_F2 131.94 123.12 5327500 10449000 157870 9432600 6317900 10539000 7141800 7205100 6396700 6649900 8066500 4961600 9745800 602690 9711100 6088200 10593000 7178100 7477300 6599400 6517500 7729700 3 3 3 3 3 3 3 3 3 3 3 3628200 7126300 97267 6618100 3749000 8185200 4851900 5011900 4416100 4323100 5728500 3378900 6647700 393140 6810800 3628300 8170500 4850300 5235200 4558300 4250600 5485400 2 2 2 2 2 2 2 2 2 2 2 1699300 3322300 60605 2814600 2568900 2353500 2289900 2193300 1980600 2326800 2338000 1582700 3098100 209550 2900300 2459800 2422400 2327700 2242000 2041100 2267000 2244300 1 1 1 1 1 1 1 1 1 1 1 1501500000 860350000 641180000 10278 3305 9556 54475;54476 65967;65968;65969 65968 3 KLASQGDSISSQLGPIHPPPR Unmodified 2184.1651 0.16511485 2380 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 0 1 By MS/MS By MS/MS 2.29 2.37 4 2 1 3 4 44.098 43.993 3;4 2.0455E-55 11619 20211116_3428_TMUAki_TMT10x_P_F1 230.29 212.24 8155300 13409000 57429 15293000 12671000 13515000 8507400 12130000 12332000 9969600 12095000 7593300 12519000 735270 15442000 12045000 13847000 8965500 12338000 12369000 9825800 11675000 10 10 5 10 10 10 10 10 10 10 10 3892200 6425300 1155.2 7212300 9190400 10313000 5500900 5900100 5911100 4715200 5884200 3623700 5998500 356620 7348500 8716800 10216000 5785400 6186000 5994600 4653900 5677100 5 5 2 5 5 5 5 5 5 5 5 4263100 6983200 56274 8080700 3480900 3202700 3006500 6229600 6420400 5254300 6211300 3969600 6520100 378640 8093200 3328100 3631600 3180100 6151800 6374900 5171800 5998300 5 5 3 5 5 5 5 5 5 5 5 3528400000 2465400000 1063000000 10279 2380 9557 54477;54478;54479;54480;54481;54482;54483 65970;65971;65972;65973;65974;65975;65976;65977;65978;65979 65973 10 KLAVNMVPFPR Oxidation (M) 1286.7169 0.71691263 1418;1668;2689;539;1640;488;2673;1889 Q13509;Q13509-2;P07437;A6NNZ2;P68371;Q13885;Q3ZCM7;Q9BVA1;P04350;Q9BUF5 TUBB3;TUBB;TUBB4B;TUBB2A;TUBB8;TUBB2B;TUBB4A;TUBB6 Tubulin beta-3 chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-6 chain no no 0 0 1 1 By MS/MS By MS/MS 4.08 1.32 2 2 3 3 2 7 5 48.336 48.374 2;3 8.4986E-05 13679 20211116_3431_TMUAki_TMT10x_P_F4 99.139 72.624 47266000 83991000 464150 78265000 89950000 109540000 57628000 115280000 115130000 82043000 84689000 44011000 78351000 4688100 80716000 85447000 109800000 61924000 115930000 113530000 81497000 82639000 17 17 12 17 17 17 17 17 17 17 17 27977000 47810000 255440 45042000 68190000 91379000 43870000 60849000 61710000 44414000 46184000 26050000 44601000 2916000 46838000 64775000 89547000 46323000 62916000 61448000 44054000 45033000 10 10 6 10 10 10 10 10 10 10 10 19289000 36181000 208710 33224000 21760000 18166000 13758000 54433000 53419000 37629000 38505000 17961000 33750000 1772100 33877000 20673000 20250000 15601000 53010000 52080000 37443000 37606000 7 7 6 7 7 7 7 7 7 7 7 21781000000 13557000000 8223800000 10280 1640;539;1418;1668;1889;2689;488;2673 9558 54484;54485;54486;54487;54488;54489;54490;54491;54492;54493;54494;54495 65980;65981;65982;65983;65984;65985;65986;65987;65988;65989;65990;65991;65992;65993;65994;65995;65996 65985 382 17 KLAVNMVPFPR Unmodified 1270.722 0.72199801 1418;1668;2689;539;1640;488;2673;1889 Q13509;Q13509-2;P07437;A6NNZ2;P68371;Q13885;Q3ZCM7;Q9BVA1;P04350;Q9BUF5 TUBB3;TUBB;TUBB4B;TUBB2A;TUBB8;TUBB2B;TUBB4A;TUBB6 Tubulin beta-3 chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-6 chain no no 0 0 0 1 By MS/MS By MS/MS 4.5 1.12 2 2 2 2 4 4 56.351 56.352 3 1.1306E-08 15971 20211116_3444_TMUAki_TMT10x_S_F5 155.11 124.54 95425000 172910000 1413500 163060000 146900000 121630000 99497000 81479000 60866000 77140000 124190000 88860000 161310000 9877700 166430000 139740000 125560000 102210000 84738000 65858000 75518000 117840000 17 17 16 17 17 17 17 17 17 17 17 35698000 60536000 625150 56559000 74105000 79265000 55213000 30097000 22461000 27866000 43354000 33243000 56471000 4080200 58320000 70618000 78245000 55979000 33015000 25025000 27307000 41175000 7 7 7 7 7 7 7 7 7 7 7 59727000 112380000 788340 106500000 72795000 42364000 44284000 51382000 38405000 49274000 80833000 55617000 104840000 5797600 108110000 69126000 47317000 46228000 51723000 40833000 48211000 76663000 10 10 9 10 10 10 10 10 10 10 10 13006000000 6897000000 6108600000 10281 1640;539;1418;1668;1889;2689;488;2673 9558 54496;54497;54498;54499;54500;54501;54502;54503 65997;65998;65999;66000;66001;66002;66003;66004;66005;66006;66007;66008;66009;66010;66011;66012;66013 66009 17 KLAVNNIAGIEEVNMIKDDGTVIHFNNPK Oxidation (M) 3208.655 0.65504724 2509 Q96K17 BTF3L4 Transcription factor BTF3 homolog 4 yes yes 0 0 1 2 By MS/MS By MS/MS 8 0 3 2 1 66.818 66.882 5 9.5887E-13 20473 20211116_3447_TMUAki_TMT10x_S_F8 102.27 96.3 22453000 39865000 295450 37429000 23999000 42471000 26833000 27667000 28269000 29135000 28942000 20908000 37189000 2118500 38432000 23098000 42623000 27114000 28921000 28720000 28395000 27899000 4 4 3 4 4 4 4 4 4 4 4 16375000 28838000 283950 28107000 16363000 34082000 18470000 19283000 19155000 20538000 20281000 15249000 26906000 1622100 28814000 15760000 34019000 18646000 20390000 19497000 20007000 19529000 2 2 2 2 2 2 2 2 2 2 2 6077400 11027000 11497 9322700 7635900 8389200 8362900 8383900 9114400 8597400 8661200 5658400 10283000 496430 9617100 7338100 8603800 8468100 8530800 9223400 8387900 8369200 2 2 1 2 2 2 2 2 2 2 2 5694500000 3942500000 1752100000 10282 2509 9559 54504;54505;54506 66014;66015;66016;66017 66016 2782 4 KLAVNNIAGIEEVNMIKDDGTVIHFNNPK Unmodified 3192.6601 0.66013262 2509 Q96K17 BTF3L4 Transcription factor BTF3 homolog 4 yes yes 0 0 0 2 By MS/MS 8 0 1 1 69.308 69.409 5 8.2447E-06 22061 20211116_3436_TMUAki_TMT10x_P_F8 63.701 58.593 4019800 5760700 0 6560000 4102900 5277900 5029800 2091000 1893500 2348600 3917400 3742600 5378300 299060 6616600 3955100 5384200 4956400 2294500 2135300 2283200 3716300 1 1 0 1 1 1 1 1 1 1 1 4019800 5760700 0 6560000 4102900 5277900 5029800 2091000 1893500 2348600 3917400 3742600 5378300 299060 6616600 3955100 5384200 4956400 2294500 2135300 2283200 3716300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1545600000 1545600000 0 10283 2509 9559 54507 66018 66018 1 KLAYVAAGDLAPINAFIGGLAAQEVMK Oxidation (M) 2746.4728 0.47277276 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 1 1 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 80.273 80.248 4 1.2197E-08 27200 20211116_3442_TMUAki_TMT10x_S_F4 83.879 78.323 5635800 8754600 312000 7887600 6880300 9303900 8107600 6049700 5229500 6421400 6355900 5249800 8165700 775450 8129000 6646900 9317700 8070600 6326300 5486000 6256200 6096400 2 2 2 2 2 2 2 2 2 2 2 2100800 3187500 79021 2761000 1899400 4518300 2673700 2824200 2307800 2790000 2747600 1956700 2972700 245000 2873100 1845500 4456500 2660300 2955900 2379400 2726300 2636900 1 1 1 1 1 1 1 1 1 1 1 3535000 5567000 232980 5126500 4980900 4785600 5433900 3225500 2921700 3631400 3608300 3293100 5193000 530450 5255900 4801400 4861200 5410400 3370400 3106600 3529900 3459600 1 1 1 1 1 1 1 1 1 1 1 7118100000 4357100000 2761000000 10284 769 9560 54508;54509;54510 66019;66020 66020 894 2 KLCATQFNNIFFLD Unmodified 1729.8498 0.84977729 1460 P86791;P86790 CCZ1;CCZ1B Vacuolar fusion protein CCZ1 homolog;Vacuolar fusion protein CCZ1 homolog B yes no 0 0 0 1 By MS/MS 3 0 1 1 79.241 79.191 3 0.074384 28893 20211116_3441_TMUAki_TMT10x_S_F3 38.511 24.169 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10285 1460 9561 54511 66021 66021 1 KLDAGNQLALIEELHK Unmodified 1790.989 0.98904797 2350 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 1 By MS/MS By MS/MS 6.6 1.02 1 1 2 1 1 4 61.598 61.854 4 2.4628E-15 20084 20211116_3435_TMUAki_TMT10x_P_F7 152.37 112.87 13616000 23373000 191600 22726000 16395000 18572000 14633000 20161000 18635000 18175000 18457000 12679000 21807000 1239700 23168000 15681000 19211000 15059000 20359000 18777000 17833000 17810000 4 4 2 4 4 4 4 4 4 4 4 3367800 6053900 139800 5702200 5038100 8517000 5199200 5002200 4802800 4372500 4372800 3136800 5647600 432900 5884100 4843300 8423900 5253100 5244400 4888100 4296400 4231600 1 1 1 1 1 1 1 1 1 1 1 10248000 17320000 51796 17024000 11357000 10055000 9433500 15159000 13833000 13803000 14084000 9541700 16160000 806810 17284000 10837000 10788000 9805600 15114000 13889000 13536000 13579000 3 3 1 3 3 3 3 3 3 3 3 2951600000 913940000 2037600000 10286 2350 9562 54512;54513;54514;54515;54516 66022;66023;66024;66025 66022 4 KLDALCNIHENIR Unmodified 1594.825 0.82495953 1207 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 1 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 42.322 42.512 4 3.0997E-06 12359 20211116_3435_TMUAki_TMT10x_P_F7 108.06 88.224 1891700 2886000 29339 3543800 5185300 4329700 2626500 2926800 2857900 2292500 2892400 1761600 2695400 230310 3580500 4909400 4330800 2805200 3027500 2898500 2265100 2789100 3 3 3 3 3 3 3 3 3 3 3 1475600 2198400 15736 2702500 4838200 4026700 2280700 2255700 2227500 1782100 2190900 1374100 2053200 184100 2741200 4575800 3980700 2445400 2368700 2267100 1760000 2114600 2 2 2 2 2 2 2 2 2 2 2 416080 687590 13603 841280 347140 302980 345880 671030 630360 510320 701500 387520 642170 46208 839340 333650 350130 359720 658870 631360 505030 674510 1 1 1 1 1 1 1 1 1 1 1 566990000 377830000 189160000 10287 1207 9563 54517;54518;54519;54520 66026;66027;66028 66026 3 KLDAQVQELHAK Unmodified 1378.7569 0.75686319 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 1 By MS/MS 5 0 1 1 37.388 37.534 4 5.9643E-06 8562 20211116_3444_TMUAki_TMT10x_S_F5 104.98 84.869 460800 708080 0 836130 406040 373250 462700 479780 513830 445960 630050 429040 661190 35821 837020 390640 411190 467960 481420 524620 436940 604190 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 460800 708080 0 836130 406040 373250 462700 479780 513830 445960 630050 429040 661190 35821 837020 390640 411190 467960 481420 524620 436940 604190 1 1 0 1 1 1 1 1 1 1 1 28932000 0 28932000 10288 935 9564 54521 66029 66029 1 KLDDFVETGDIR Unmodified 1406.7042 0.70415892 1676 Q14108;Q14108-2 SCARB2 Lysosome membrane protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 3.71 1.03 1 2 2 2 4 3 52.059 52.049 3 4.9383E-12 14381 20211116_3444_TMUAki_TMT10x_S_F5 130.2 95.507 34805000 54351000 50408 64192000 58650000 64558000 41094000 53975000 55302000 46670000 52222000 32405000 50752000 3023200 64797000 55782000 65507000 43041000 55194000 55529000 45882000 50472000 8 8 4 8 8 8 8 8 8 8 8 21652000 32458000 33512 37767000 46286000 52860000 30033000 33062000 33440000 28574000 31269000 20158000 30307000 1942100 38380000 43959000 52474000 31419000 34480000 33794000 28092000 30232000 5 5 2 5 5 5 5 5 5 5 5 13153000 21892000 16896 26425000 12364000 11698000 11061000 20913000 21861000 18096000 20953000 12246000 20445000 1081200 26417000 11823000 13032000 11622000 20714000 21735000 17790000 20241000 3 3 2 3 3 3 3 3 3 3 3 3105500000 1933500000 1172000000 10289 1676 9565 54522;54523;54524;54525;54526;54527;54528 66030;66031;66032;66033;66034;66035;66036;66037;66038;66039 66039 10 KLDDTPSGAGKFPAGHSVIQLAR Unmodified 2364.255 0.25499249 2863 Q9HC52 CBX8 Chromobox protein homolog 8 yes yes 0 0 0 2 By MS/MS By matching 2 0 2 1 1 46.619 46.448 5 0.0060936 14196 20211116_3429_TMUAki_TMT10x_P_F2 52.321 35.039 1065600 1512100 0 1566400 1962800 2256900 1294900 1305500 1126500 1151900 1236800 992190 1411100 98657 1604500 1865100 2235200 1343200 1370700 1157300 1131300 1189700 1 1 0 1 1 1 1 1 1 1 1 1065600 1512100 0 1566400 1962800 2256900 1294900 1305500 1126500 1151900 1236800 992190 1411100 98657 1604500 1865100 2235200 1343200 1370700 1157300 1131300 1189700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 304410000 221920000 82487000 10290 2863 9566 54529;54530 66040 66040 1 KLDEAVAEAHLGK Unmodified 1379.7409 0.74087877 786 P23526;P23526-2 AHCY Adenosylhomocysteinase yes no 0 0 0 1 By MS/MS By MS/MS 5.56 0.831 1 3 4 1 5 4 45.089 45.285 3;4 1.0907E-05 11912 20211116_3445_TMUAki_TMT10x_S_F6 89.648 73.016 24857000 36493000 310430 40215000 45100000 37969000 25904000 23534000 24681000 21438000 30870000 23145000 34066000 2458400 40729000 42769000 38494000 27241000 24593000 25381000 21024000 29587000 8 8 3 8 8 8 8 8 8 8 8 17300000 24982000 290840 27063000 37959000 31971000 18830000 16109000 16983000 14553000 21180000 16109000 23319000 1893800 27535000 35927000 31911000 20043000 17133000 17507000 14278000 20302000 5 5 2 5 5 5 5 5 5 5 5 7556600 11511000 19589 13152000 7141900 5997600 7073700 7424800 7697200 6884300 9689500 7035500 10747000 564630 13194000 6842600 6583300 7198000 7460800 7874000 6745800 9285400 3 3 1 3 3 3 3 3 3 3 3 6594000000 4052200000 2541800000 10291 786 9567 54531;54532;54533;54534;54535;54536;54537;54538;54539 66041;66042;66043;66044;66045;66046;66047;66048;66049;66050;66051 66050 11 KLDELYGTWR Unmodified 1279.6561 0.65608651 953 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 0 1 By MS/MS By MS/MS 7.17 0.687 1 3 2 4 2 54.209 54.483 2;3 0.00012482 17122 20211116_3435_TMUAki_TMT10x_P_F7 93.258 65.929 56383000 95244000 540620 112600000 79563000 69389000 68696000 38725000 36332000 41961000 71582000 52501000 88938000 5307800 113000000 76036000 72665000 69248000 41017000 39629000 40848000 67961000 7 7 5 7 7 7 7 7 7 7 7 25524000 40589000 391750 49232000 57254000 50099000 45258000 17533000 16453000 18133000 31262000 23769000 37906000 2925600 49627000 54620000 50252000 45642000 19488000 18524000 17685000 29698000 3 3 3 3 3 3 3 3 3 3 3 30859000 54655000 148870 63365000 22309000 19290000 23438000 21192000 19879000 23828000 40321000 28732000 51032000 2382200 63369000 21415000 22413000 23605000 21529000 21105000 23163000 38263000 4 4 2 4 4 4 4 4 4 4 4 4783900000 3223900000 1560000000 10292 953 9568 54540;54541;54542;54543;54544;54545 66052;66053;66054;66055;66056;66057;66058;66059 66054 8 KLDELYGTWRK Unmodified 1407.751 0.75104953 953 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 0 2 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 51.199 51.059 4 1.0095E-05 14746 20211116_3440_TMUAki_TMT10x_S_F2 115.8 94.247 7694700 11935000 28618 17558000 12662000 8325200 8446800 5550300 4670900 5404100 10321000 7164800 11158000 734180 17377000 12036000 8988300 8671400 5778800 5117600 5284000 9781200 3 3 3 3 3 3 3 3 3 3 3 3034400 4341400 11158 6253500 9620600 6166900 5442000 2352300 1814400 2056600 3773300 2825400 4058100 354220 6243200 9120300 6202000 5626200 2575300 2074100 2020800 3579300 1 1 1 1 1 1 1 1 1 1 1 4660300 7594100 17460 11304000 3041100 2158400 3004800 3198000 2856600 3347500 6547500 4339400 7099900 379970 11133000 2916100 2786300 3045200 3203500 3043500 3263200 6201800 2 2 2 2 2 2 2 2 2 2 2 854700000 570580000 284120000 10293 953 9569 54546;54547;54548 66060;66061;66062 66061 3 KLDGETTDLQDQIAELQAQIDELK Unmodified 2713.3658 0.36578431 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 1 By MS/MS 4 0 1 1 80.05 80.027 4 0.0061127 27130 20211116_3442_TMUAki_TMT10x_S_F4 44.711 24.989 2849700 5089500 92573 4653600 3418400 2875800 3798100 2221900 2308200 2662300 3286300 2654100 4747400 330500 4751600 3292800 3024600 3786600 2305300 2448100 2582000 3139900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2849700 5089500 92573 4653600 3418400 2875800 3798100 2221900 2308200 2662300 3286300 2654100 4747400 330500 4751600 3292800 3024600 3786600 2305300 2448100 2582000 3139900 1 1 1 1 1 1 1 1 1 1 1 483100000 0 483100000 10294 935 9570 54549 66063 66063 1 KLDGFPLLR Unmodified 1057.6284 0.6284152 584 P09661 SNRPA1 U2 small nuclear ribonucleoprotein A' yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 58.299 57.996 3 0.00011009 17581 20211116_3440_TMUAki_TMT10x_S_F2 94.297 39.689 16058000 25946000 125090 29773000 23474000 28739000 18837000 18513000 18057000 18944000 22088000 14953000 24224000 1551800 30088000 22399000 29111000 19326000 19352000 18547000 18484000 21183000 5 5 5 5 5 5 5 5 5 5 5 9187000 14915000 55095 16813000 17593000 22626000 12207000 10851000 10473000 10960000 12586000 8554400 13924000 930750 17105000 16737000 22426000 12610000 11630000 10805000 10700000 12075000 3 3 3 3 3 3 3 3 3 3 3 6871300 11031000 69995 12960000 5881100 6113200 6630100 7662200 7584300 7983900 9502200 6398300 10300000 621040 12983000 5662100 6684900 6715600 7721900 7742000 7784200 9107100 2 2 2 2 2 2 2 2 2 2 2 1210400000 967220000 243210000 10295 584 9571 54550;54551;54552;54553 66064;66065;66066;66067;66068;66069 66067 6 KLDIVEDSIYIAYGPNGK Unmodified 1994.0361 0.03605774 2949 Q9NTZ6 RBM12 RNA-binding protein 12 yes yes 0 0 0 1 By MS/MS 7 0 1 1 75.109 75.216 3 1.8858E-07 26260 20211116_3446_TMUAki_TMT10x_S_F7 102.58 85.499 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10296 2949 9572 54554 66070 66070 1 KLDPELHLDIK Unmodified 1319.7449 0.74490152 1575 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 0 1 By MS/MS By MS/MS 5.27 1.77 1 2 2 3 3 2 2 8 7 51.93 52.029 3;4 7.3255E-06 14210 20211116_3434_TMUAki_TMT10x_P_F6 112.51 53.83 77450000 117330000 207440 137180000 104710000 108230000 87931000 82334000 79675000 87959000 94427000 72112000 109560000 6672700 138110000 99974000 111460000 89814000 85187000 81941000 85674000 90634000 14 14 7 14 14 14 14 14 14 14 14 35584000 52568000 113680 61153000 69345000 71176000 42306000 39313000 36274000 40170000 43383000 33132000 49084000 3387600 61930000 65809000 71175000 44140000 41604000 37419000 39196000 41630000 8 8 5 8 8 8 8 8 8 8 8 41865000 64765000 93765 76028000 35369000 37058000 45625000 43021000 43401000 47790000 51044000 38980000 60474000 3285100 76183000 34165000 40290000 45674000 43583000 44521000 46477000 49004000 6 6 2 6 6 6 6 6 6 6 6 13212000000 7484300000 5727900000 10297 1575 9573 54555;54556;54557;54558;54559;54560;54561;54562;54563;54564;54565;54566;54567;54568;54569 66071;66072;66073;66074;66075;66076;66077;66078;66079;66080;66081;66082;66083;66084;66085 66073 15 KLDPGSEETQTLVR Unmodified 1571.8155 0.81550028 821 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 1 By MS/MS By MS/MS 4.11 1.45 2 1 2 2 2 4 5 40.298 40.308 3 1.1396E-29 10698 20211116_3431_TMUAki_TMT10x_P_F4 209.6 186.59 45366000 63843000 604960 100100000 135330000 93928000 56033000 68676000 87630000 48566000 77169000 42241000 59708000 5119200 99468000 127770000 95501000 61962000 70498000 87395000 48260000 74766000 16 16 11 16 16 16 16 16 16 16 16 27477000 37964000 371590 60336000 122020000 82762000 42499000 41441000 53702000 29266000 46611000 25584000 35508000 3619400 60308000 115000000 82000000 47613000 43855000 53891000 29084000 45183000 7 7 5 7 7 7 7 7 7 7 7 17889000 25879000 233370 39767000 13310000 11167000 13535000 27236000 33928000 19300000 30558000 16657000 24200000 1499800 39160000 12773000 13501000 14349000 26643000 33504000 19176000 29583000 9 9 6 9 9 9 9 9 9 9 9 10652000000 8140900000 2511400000 10298 821 9574 54570;54571;54572;54573;54574;54575;54576;54577;54578 66086;66087;66088;66089;66090;66091;66092;66093;66094;66095;66096;66097;66098;66099;66100;66101 66089 16 KLDPPGGQFYNSK Unmodified 1449.7252 0.72522871 430 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 45.996 46.035 3 5.1734E-05 12513 20211116_3436_TMUAki_TMT10x_P_F8 98.676 77.119 1421900 2124600 26242 3010800 3822400 3977200 1901400 2100800 2805200 1983300 2161200 1324000 1985800 156800 3023300 3617100 3949900 2057100 2227200 2791400 1941800 2104700 2 2 1 2 2 2 2 2 2 2 2 1264400 1727400 0 2528500 3606000 3770600 1732200 1798300 2490200 1645900 1795000 1177200 1614800 118460 2541400 3409200 3720300 1878500 1923300 2475500 1613700 1753100 1 1 0 1 1 1 1 1 1 1 1 157500 397210 26242 482310 216380 206600 169250 302550 315050 337420 366160 146840 370950 38339 481900 207880 229640 178650 303810 315950 328100 351640 1 1 1 1 1 1 1 1 1 1 1 305180000 212750000 92422000 10299 430 9575 54579;54580 66102 66102 1 KLDSGGFYITSR Unmodified 1342.6881 0.68811492 645 P12931-2;P12931 SRC Proto-oncogene tyrosine-protein kinase Src yes no 0 0 0 1 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 46.1 46.068 3 0.00021483 12543 20211116_3436_TMUAki_TMT10x_P_F8 89.466 63.924 7377900 11856000 107380 13276000 15775000 15237000 9555000 10110000 9879200 8998700 10823000 6870400 11068000 829360 13472000 14976000 15286000 10027000 10505000 10070000 8834400 10411000 4 4 4 4 4 4 4 4 4 4 4 5792900 9372200 81248 10454000 14428000 14012000 8374000 7986700 7878600 7255800 8702700 5394400 8749300 676940 10642000 13687000 13920000 8795300 8402500 8066000 7116500 8369600 3 3 3 3 3 3 3 3 3 3 3 1585000 2483700 26131 2821300 1347000 1224600 1181000 2123700 2000600 1742900 2120300 1476000 2318800 152430 2830500 1289000 1366300 1232000 2102500 2003700 1717900 2041700 1 1 1 1 1 1 1 1 1 1 1 592100000 502650000 89449000 10300 645 9576 54581;54582;54583 66103;66104;66105;66106 66105 4 KLDVEEPDSANSSFYSTR Unmodified 2043.9385 0.93852854 1741 Q14980;Q14980-2;Q14980-5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 47.698 47.745 3 4.0501E-63 13719 20211116_3433_TMUAki_TMT10x_P_F5 257.93 248.32 19041000 32328000 67826 46405000 45375000 48787000 29321000 37901000 41583000 29329000 31976000 17728000 30218000 1790000 46382000 43094000 49309000 30961000 38828000 41426000 28998000 31143000 8 8 4 8 8 8 8 8 8 8 8 13212000 21732000 55752 31839000 42162000 45302000 26795000 26727000 29224000 20055000 21093000 12300000 20316000 1344300 31969000 40030000 44903000 28058000 27912000 29336000 19862000 20600000 5 5 2 5 5 5 5 5 5 5 5 5828800 10596000 12073 14566000 3213300 3484700 2526200 11174000 12359000 9274000 10882000 5427200 9901600 445730 14413000 3063700 4406300 2902700 10916000 12091000 9135700 10543000 3 3 2 3 3 3 3 3 3 3 3 4669000000 3000200000 1668800000 10301 1741 9577 54584;54585;54586;54587;54588;54589 66107;66108;66109;66110;66111;66112;66113;66114 66111 8 KLDVSIEMPEELDISQLR Oxidation (M) 2130.0878 0.087835314 1036 P45974;P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 1 1 By MS/MS By MS/MS 4.75 0.829 2 1 1 2 2 67.561 67.589 3 8.1022E-07 22150 20211116_3442_TMUAki_TMT10x_S_F4 87.676 69.08 12914000 22143000 124500 22464000 15861000 25418000 15497000 33523000 19203000 39316000 18484000 12025000 20663000 1177900 22939000 15203000 25894000 15853000 33849000 19349000 38159000 17853000 5 5 3 5 5 5 5 5 5 5 5 7711300 12563000 124500 13276000 8203400 18468000 9198700 19453000 10853000 23666000 10596000 7180900 11725000 762240 13571000 7898400 18516000 9329800 19855000 10960000 22940000 10230000 3 3 3 3 3 3 3 3 3 3 3 5203100 9581000 0 9187800 7657500 6949500 6298600 14070000 8350500 15649000 7887200 4844200 8938600 415680 9367300 7304900 7377700 6523500 13993000 8389000 15219000 7622900 2 2 0 2 2 2 2 2 2 2 2 2536200000 1968900000 567360000 10302 1036 9578 54590;54591;54592;54593 66115;66116;66117;66118;66119;66120 66118 1340 6 KLDVSVK Unmodified 787.48035 0.48035398 2652 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 1 By MS/MS 7.5 0.5 1 1 2 37.899 38.255 3 0.052897 9364 20211116_3436_TMUAki_TMT10x_P_F8 52.255 23.512 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10303 2652 9579 54594;54595 66121;66122 66122 2 KLDYGQHVVAGTPGR Unmodified 1596.8372 0.83723877 973 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 4 2 2 34.051 34.046 3;4 6.2247E-07 9548 20211116_3439_TMUAki_TMT10x_S_F1 114.59 94.123 951770 1581000 10688 1983300 2066900 1421400 1132600 1058500 1292100 995940 1453000 886220 1476700 97767 1986400 1958600 1474500 1202700 1092600 1313200 975270 1396700 4 4 3 4 4 4 4 4 4 4 4 436110 700690 3052 901520 1529100 985280 568890 432600 533990 448330 619540 406030 654570 47589 906770 1441800 986150 626180 468200 547810 437220 595000 2 2 1 2 2 2 2 2 2 2 2 515660 880270 7635.9 1081800 537770 436130 563740 625880 758080 547610 833490 480190 822140 50178 1079700 516760 488380 576490 624430 765390 538050 801710 2 2 2 2 2 2 2 2 2 2 2 290250000 172790000 117460000 10304 973 9580 54596;54597;54598;54599 66123;66124;66125;66126 66125 4 KLEAAEDIAYQLSR Unmodified 1605.8362 0.83623572 924 P35232 PHB Prohibitin yes yes 0 0 0 1 By MS/MS By MS/MS 4.83 1.48 2 2 14 7 4 4 2 24 11 67.872 67.913 2;3 1.6485E-29 22071 20211116_3446_TMUAki_TMT10x_S_F7 205.52 171.74 164840000 275120000 1801200 275710000 205820000 253350000 188480000 189360000 181230000 184370000 205650000 153490000 256720000 15281000 280890000 196980000 258040000 191870000 195610000 185550000 180270000 197630000 42 42 21 42 42 42 42 42 42 42 42 87177000 144730000 894600 140500000 113770000 175830000 110720000 98500000 96569000 94671000 107500000 81174000 135030000 8053400 144160000 109040000 175210000 112020000 103940000 99250000 92618000 103370000 31 31 14 31 31 31 31 31 31 31 31 77665000 130390000 906610 135210000 92051000 77516000 77768000 90857000 84660000 89700000 98150000 72319000 121690000 7227300 136730000 87942000 82826000 79843000 91669000 86304000 87653000 94264000 11 11 7 11 11 11 11 11 11 11 11 32925000000 17134000000 15791000000 10305 924 9581 54600;54601;54602;54603;54604;54605;54606;54607;54608;54609;54610;54611;54612;54613;54614;54615;54616;54617;54618;54619;54620;54621;54622;54623;54624;54625;54626;54627;54628;54629;54630;54631;54632;54633;54634 66127;66128;66129;66130;66131;66132;66133;66134;66135;66136;66137;66138;66139;66140;66141;66142;66143;66144;66145;66146;66147;66148;66149;66150;66151;66152;66153;66154;66155;66156;66157;66158;66159;66160;66161;66162;66163;66164;66165;66166;66167;66168;66169;66170;66171;66172;66173 66172 47 KLEAAEER Unmodified 944.49271 0.49270958 698;2389 P16949;P16949-2;Q9H169;Q9H169-3;Q9H169-4;Q9H169-2;Q93045;Q93045-2 STMN1;STMN4;STMN2 Stathmin;Stathmin-4;Stathmin-2 no no 0 0 0 1 By MS/MS By MS/MS 2.82 1.47 3 2 2 2 2 8 3 29.276 29.188 2;3 0.002187 8733 20211116_3441_TMUAki_TMT10x_S_F3 99.788 69.101 7881000 12707000 28099 11715000 6670800 10921000 6051600 4774100 5616400 5238900 8232800 7337800 11853000 610990 12010000 6379100 11037000 6157300 5178100 5825600 5097500 7860900 10 10 4 10 10 10 10 10 10 10 10 4841300 7527600 25743 6527600 4613600 6742800 3868000 2942900 3429100 3249500 4935800 4507800 7020300 398680 6733100 4405100 6770400 3948900 3193100 3561200 3161000 4714700 7 7 2 7 7 7 7 7 7 7 7 3039700 5179200 2355.9 5187900 2057200 4178400 2183600 1831200 2187300 1989500 3297000 2830000 4832800 212310 5276800 1974000 4266200 2208500 1985000 2264400 1936500 3146200 3 3 2 3 3 3 3 3 3 3 3 570260000 340970000 229300000 10306 698;2389 9582 54635;54636;54637;54638;54639;54640;54641;54642;54643;54644;54645 66174;66175;66176;66177;66178;66179;66180;66181 66180 8 KLEAELLQIEER Unmodified 1469.809 0.80895834 2393 Q969G3;Q969G3-6;Q969G3-5;Q969G3-3;Q969G3-2;Q969G3-4 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 0 0 0 1 By MS/MS By MS/MS 2.78 1.31 2 2 2 2 1 4 5 61.533 61.386 3 8.5879E-09 20288 20211116_3429_TMUAki_TMT10x_P_F2 141.07 94.424 92854000 150070000 640770 154130000 112430000 154840000 107260000 131630000 124700000 120490000 128280000 86459000 140050000 8345700 156970000 107700000 157180000 109610000 134670000 126220000 118130000 123640000 16 16 12 16 16 16 16 16 16 16 16 43700000 67907000 236110 70705000 58050000 102240000 56718000 63647000 60683000 57213000 59686000 40690000 63375000 3909500 72404000 55634000 101350000 57724000 66467000 61526000 56142000 57608000 7 7 4 7 7 7 7 7 7 7 7 49154000 82166000 404670 83429000 54383000 52596000 50545000 67984000 64015000 63275000 68596000 45769000 76674000 4436200 84561000 52067000 55829000 51888000 68204000 64697000 61992000 66030000 9 9 8 9 9 9 9 9 9 9 9 6433700000 3572800000 2860800000 10307 2393 9583 54646;54647;54648;54649;54650;54651;54652;54653;54654 66182;66183;66184;66185;66186;66187;66188;66189;66190;66191;66192;66193;66194;66195;66196;66197;66198 66184 17 KLEDGPK Unmodified 785.42832 0.42831841 1416 P68104;Q5VTE0 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 0 0 0 1 By MS/MS By MS/MS 3.11 1.59 2 2 1 1 3 5 4 29.901 29.865 3 0.015299 8152 20211116_3429_TMUAki_TMT10x_P_F2 68.016 14.544 33893000 54320000 446540 43731000 30220000 41405000 35201000 22233000 25072000 24023000 34079000 31561000 50647000 3169100 45326000 29128000 41893000 35132000 23626000 26269000 23388000 32596000 10 10 9 10 10 10 10 10 10 10 10 21740000 33689000 263040 25438000 17803000 29363000 21140000 12685000 14059000 13963000 19835000 20244000 31404000 1992400 26592000 17170000 29296000 21049000 13777000 14817000 13584000 18955000 4 4 4 4 4 4 4 4 4 4 4 12154000 20631000 183490 18293000 12417000 12042000 14061000 9547600 11014000 10060000 14244000 11318000 19242000 1176700 18733000 11959000 12597000 14082000 9848600 11452000 9804000 13641000 6 6 5 6 6 6 6 6 6 6 6 2565500000 1812600000 752940000 10308 1416 9584 54655;54656;54657;54658;54659;54660;54661;54662;54663 66199;66200;66201;66202;66203;66204;66205;66206;66207;66208;66209 66201 11 KLEDNPK Unmodified 842.44978 0.44978213 1520 Q05639 EEF1A2 Elongation factor 1-alpha 2 yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 31.147 31.132 3 0.01674 6820 20211116_3431_TMUAki_TMT10x_P_F4 80.219 36.972 1316400 1994400 0 1566800 1358500 1920600 1219500 931410 1016200 957530 1365700 1225600 1859300 104170 1633900 1298800 1912500 1237900 997700 1055100 934090 1306600 1 1 0 1 1 1 1 1 1 1 1 1316400 1994400 0 1566800 1358500 1920600 1219500 931410 1016200 957530 1365700 1225600 1859300 104170 1633900 1298800 1912500 1237900 997700 1055100 934090 1306600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 91676000 91676000 0 10309 1520 9585 54664;54665 66210 66210 1 KLEEEQIILEDQNCK Unmodified 1887.9248 0.92479273 934 P35579 MYH9 Myosin-9 yes yes 0 0 0 1 By MS/MS By MS/MS 2.78 1.03 1 3 2 3 4 5 53.154 53.017 3;4 2.5399E-10 18385 20211116_3441_TMUAki_TMT10x_S_F3 121.13 108.98 25016000 40584000 249110 44421000 38124000 42532000 28856000 28161000 28091000 25898000 31790000 23293000 37883000 2405000 45018000 36331000 43122000 29730000 29290000 28743000 25386000 30552000 9 9 6 9 9 9 9 9 9 9 9 16830000 27462000 216910 29650000 31142000 36707000 22689000 18778000 18621000 17283000 21035000 15671000 25633000 1731600 30199000 29656000 36556000 23330000 19952000 19208000 16941000 20217000 5 5 4 5 5 5 5 5 5 5 5 8186200 13122000 32193 14771000 6982200 5825200 6166700 9383300 9470100 8615000 10754000 7622200 12250000 673440 14819000 6675100 6566100 6400100 9337800 9535200 8445500 10334000 4 4 2 4 4 4 4 4 4 4 4 2683500000 1710000000 973510000 10310 934 9586 54666;54667;54668;54669;54670;54671;54672;54673;54674 66211;66212;66213;66214;66215;66216;66217;66218;66219;66220;66221 66219 11 KLEELEKEEELR Unmodified 1543.8094 0.80935227 2735 Q9BZE4;Q9BZE4-3;Q9BZE4-2 GTPBP4 Nucleolar GTP-binding protein 1 yes no 0 0 0 2 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 45.586 45.421 4 0.00019108 13732 20211116_3429_TMUAki_TMT10x_P_F2 94.45 74.402 10597000 16959000 9387.1 20355000 20140000 19945000 12628000 13353000 16304000 12197000 16148000 9866500 15837000 992680 20519000 19121000 20196000 13316000 13874000 16420000 11959000 15582000 4 4 2 4 4 4 4 4 4 4 4 7192400 11744000 9283.2 13384000 17670000 17395000 9750700 8867100 10758000 8358400 10840000 6696900 10964000 750580 13598000 16744000 17282000 10336000 9430600 10903000 8184200 10455000 2 2 1 2 2 2 2 2 2 2 2 3404400 5215500 103.82 6971200 2469700 2550100 2877700 4485700 5545800 3838200 5308000 3169600 4873200 242100 6921700 2376500 2914100 2980200 4443700 5516700 3775200 5127800 2 2 1 2 2 2 2 2 2 2 2 668690000 473310000 195380000 10311 2735 9587 54675;54676;54677;54678 66222;66223;66224 66222 3 KLEELELDEQQR Unmodified 1528.7733 0.77330111 1496 Q02750;Q02750-2 MAP2K1 Dual specificity mitogen-activated protein kinase kinase 1 yes no 0 0 0 1 By MS/MS 3 0 1 1 46.557 46.212 3 1.2117E-05 15581 20211116_3441_TMUAki_TMT10x_S_F3 99.566 84.876 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10312 1496 9588 54679 66225 66225 1 KLEGELTEEVEMAK Oxidation (M) 1620.7917 0.79165329 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 1 1 By MS/MS 1 0 1 1 57.269 57.269 3 8.6172E-05 16997 20211116_3428_TMUAki_TMT10x_P_F1 90.367 73.288 2531600 4225200 85958 4308500 4070800 5731000 3558300 3240900 4033200 3386100 3448300 2357800 3942900 311560 4410700 3895600 5694600 3650800 3425100 4061500 3301000 3344600 1 1 1 1 1 1 1 1 1 1 1 2531600 4225200 85958 4308500 4070800 5731000 3558300 3240900 4033200 3386100 3448300 2357800 3942900 311560 4410700 3895600 5694600 3650800 3425100 4061500 3301000 3344600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 315900000 315900000 0 10313 1723 9589 54680 66226 66226 2314 1 KLEGELTEEVEMAK Unmodified 1604.7967 0.79673867 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 59.588 59.588 3 5.7316E-10 18262 20211116_3440_TMUAki_TMT10x_S_F2 118.21 100.29 2865700 4818100 13318 5260800 3319500 4924100 3382000 2463400 2488200 2386700 3170000 2668300 4497400 256350 5330500 3185200 4981900 3399600 2626500 2594600 2334100 3036900 1 1 1 1 1 1 1 1 1 1 1 2865700 4818100 13318 5260800 3319500 4924100 3382000 2463400 2488200 2386700 3170000 2668300 4497400 256350 5330500 3185200 4981900 3399600 2626500 2594600 2334100 3036900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 253640000 253640000 0 10314 1723 9589 54681;54682 66227;66228 66228 2 KLEIGFNGNR Unmodified 1146.6146 0.61455605 2876 Q9HD45 TM9SF3 Transmembrane 9 superfamily member 3 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 41.687 41.73 3 0.00060215 10195 20211116_3447_TMUAki_TMT10x_S_F8 95.401 67.78 8973400 14322000 155910 15102000 16485000 15410000 10579000 10204000 10612000 9548200 12313000 8356300 13367000 994470 15356000 15668000 15562000 11041000 10618000 10855000 9352300 11826000 4 4 4 4 4 4 4 4 4 4 4 6023200 9574600 124230 10267000 13176000 12673000 7627600 6855600 7224400 6345300 8514900 5609100 8936700 715310 10461000 12501000 12631000 8014600 7248600 7413000 6218200 8174100 2 2 2 2 2 2 2 2 2 2 2 2950300 4747200 31684 4834900 3309500 2736400 2951700 3348100 3387400 3202900 3798500 2747200 4430000 279160 4894800 3166200 2930900 3026200 3368900 3441600 3134100 3651500 2 2 2 2 2 2 2 2 2 2 2 651250000 434090000 217160000 10315 2876 9590 54683;54684;54685;54686 66229;66230;66231;66232 66232 4 KLELSDNIISGGLEVLAEK Unmodified 2027.115 0.11503634 2666 Q9BTT0;Q9BTT0-3 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E yes no 0 0 0 1 By MS/MS By MS/MS 5.67 1.83 1 1 2 4 3 4 3 8 10 78.798 78.798 3;4 4.341E-24 25601 20211116_3445_TMUAki_TMT10x_S_F6 174.02 151.21 127490000 208310000 1207100 186030000 128460000 188390000 162910000 116210000 122260000 141980000 155460000 118710000 194300000 11013000 191390000 124070000 190150000 162190000 122570000 127330000 137610000 148940000 21 21 13 21 21 21 21 21 21 21 21 53923000 84625000 216580 75805000 48851000 96268000 58839000 46847000 48970000 57125000 63516000 50207000 78931000 4287200 78263000 47085000 95698000 58855000 50432000 50766000 55367000 60821000 8 8 4 8 8 8 8 8 8 8 8 73571000 123690000 990500 110230000 79610000 92125000 104070000 69363000 73286000 84857000 91943000 68507000 115360000 6725300 113130000 76983000 94456000 103330000 72136000 76565000 82238000 88116000 13 13 9 13 13 13 13 13 13 13 13 28668000000 12800000000 15868000000 10316 2666 9591 54687;54688;54689;54690;54691;54692;54693;54694;54695;54696;54697;54698;54699;54700;54701;54702;54703;54704 66233;66234;66235;66236;66237;66238;66239;66240;66241;66242;66243;66244;66245;66246;66247;66248;66249;66250;66251;66252;66253 66246 21 KLELSDNR Unmodified 973.51926 0.51925868 977 P39687 ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member A yes yes 0 0 0 1 By MS/MS By MS/MS 4.88 0.331 1 7 3 5 28.983 29.042 2;3 0.001441 7979 20211116_3433_TMUAki_TMT10x_P_F5 108.26 57.069 10890000 16893000 24302 16771000 12716000 18956000 9840700 9678100 11610000 10433000 12953000 10140000 15762000 928750 17151000 12121000 18968000 10187000 10331000 11781000 10158000 12453000 9 9 7 9 9 9 9 9 9 9 9 9738400 14992000 13138 14859000 11615000 17629000 8438200 8697200 10474000 9405200 11543000 9067400 13989000 824860 15209000 11057000 17588000 8788400 9314700 10604000 9156400 11102000 2 2 1 2 2 2 2 2 2 2 2 1151600 1900500 11165 1912500 1101100 1326600 1402500 980860 1136200 1028000 1410200 1072300 1773400 103890 1941400 1064000 1379800 1398600 1016100 1177200 1002000 1351900 7 7 6 7 7 7 7 7 7 7 7 618970000 577510000 41462000 10317 977 9592 54705;54706;54707;54708;54709;54710;54711;54712 66254;66255;66256;66257;66258;66259;66260;66261;66262;66263;66264 66255 11 KLELSDNRVSGGLEVLAEK Unmodified 2056.1164 0.11643333 977 P39687 ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member A yes yes 0 0 0 2 By MS/MS By MS/MS 7 0.707 1 2 1 1 3 58.966 59.281 4 2.3671E-08 17688 20211116_3445_TMUAki_TMT10x_S_F6 113.26 84.304 27753000 47546000 270550 46529000 45920000 36346000 26337000 48424000 35960000 35236000 40419000 25841000 44362000 2548700 47387000 43538000 37926000 28036000 48230000 36320000 34957000 38853000 4 4 3 4 4 4 4 4 4 4 4 7554100 13414000 116080 11927000 11490000 20110000 9795200 15147000 10919000 10919000 11486000 7034500 12512000 789590 12395000 10981000 19870000 10059000 15524000 11079000 10839000 11063000 1 1 1 1 1 1 1 1 1 1 1 20199000 34131000 154470 34602000 34431000 16236000 16542000 33277000 25041000 24317000 28933000 18807000 31850000 1759100 34992000 32556000 18056000 17977000 32705000 25241000 24118000 27791000 3 3 2 3 3 3 3 3 3 3 3 3278600000 1264000000 2014600000 10318 977 9593 54713;54714;54715;54716 66265;66266;66267;66268 66267 4 KLELSENR Unmodified 987.53491 0.53490874 2357 Q92688;Q92688-2 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B yes no 0 0 0 1 By MS/MS By MS/MS 4 1.07 1 1 2 3 3 4 30.049 30.016 3 0.0017422 7924 20211116_3433_TMUAki_TMT10x_P_F5 102.06 65.821 10452000 15972000 180360 17736000 12482000 16895000 11478000 8220200 10829000 9229100 12252000 9733500 14910000 1063100 17956000 11954000 17069000 11675000 8825700 11095000 8972100 11775000 5 5 5 5 5 5 5 5 5 5 5 7849900 11750000 44351 12994000 10368000 14145000 8499100 5850800 7937700 6652200 8950900 7309400 10969000 727410 13185000 9896900 14152000 8701300 6391200 8135700 6463800 8603300 2 2 2 2 2 2 2 2 2 2 2 2602400 4222400 136010 4741700 2114600 2750600 2978700 2369400 2891100 2577000 3301300 2424100 3941800 335680 4770900 2057500 2916400 2973600 2434500 2959600 2508300 3172000 3 3 3 3 3 3 3 3 3 3 3 599930000 452240000 147690000 10319 2357 9594 54717;54718;54719;54720;54721;54722;54723 66269;66270;66271;66272;66273 66270 5 KLENSPLGEALR Unmodified 1325.7303 0.73031409 2998 Q9NX40;Q9NX40-3;Q9NX40-2;Q9NX40-4 OCIAD1 OCIA domain-containing protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 6.33 0.745 1 2 3 3 3 45.998 46.132 3 5.5724E-15 14297 20211116_3446_TMUAki_TMT10x_S_F7 146.77 119.1 17335000 27022000 405120 33430000 30204000 27002000 18211000 22098000 22222000 19763000 24323000 16144000 25238000 1951900 33555000 28681000 27794000 19223000 22646000 22506000 19398000 23399000 6 6 5 6 6 6 6 6 6 6 6 9396600 13999000 210670 17045000 23010000 20397000 12011000 11238000 11201000 10044000 12803000 8750400 13074000 1123000 17224000 21797000 20366000 12733000 11853000 11488000 9858300 12301000 3 3 2 3 3 3 3 3 3 3 3 7938700 13023000 194450 16385000 7193500 6605300 6200500 10860000 11020000 9719500 11520000 7393200 12165000 828960 16332000 6884300 7427900 6490500 10793000 11018000 9539600 11098000 3 3 3 3 3 3 3 3 3 3 3 904660000 524040000 380620000 10320 2998 9595 54724;54725;54726;54727;54728;54729 66274;66275;66276;66277;66278;66279;66280;66281;66282 66282 9 KLERPPETPTVDPTVK Unmodified 1805.9887 0.98871362 1735 Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 0 2 By MS/MS 6.5 0.5 1 1 2 39.625 39.852 4 0.0014142 9351 20211116_3434_TMUAki_TMT10x_P_F6 63.681 44.606 2958900 4516600 52317 5643800 8839600 9196900 4581600 6200900 6923200 5162500 5291600 2755100 4218700 336990 5731200 8369400 9082700 4942400 6424800 6882800 5084800 5155100 3 3 2 3 3 3 3 3 3 3 3 2958900 4516600 52317 5643800 8839600 9196900 4581600 6200900 6923200 5162500 5291600 2755100 4218700 336990 5731200 8369400 9082700 4942400 6424800 6882800 5084800 5155100 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 264120000 264120000 0 10321 1735 9596 54730;54731 66283;66284;66285 66284 3 KLETAVNLAWTAGNSNTR Unmodified 1945.0017 0.0017379196 760 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.707 2 4 2 4 4 59.38 59.154 3;4 1.2613E-23 18061 20211116_3431_TMUAki_TMT10x_P_F4 170.38 158.77 57417000 92592000 1953000 94492000 68422000 72156000 69066000 60974000 55397000 57833000 75233000 53475000 86405000 6697200 95929000 65738000 74634000 69600000 62464000 57659000 56612000 71961000 10 10 9 10 10 10 10 10 10 10 10 27244000 44149000 514330 43746000 39066000 45381000 36355000 27142000 24160000 25801000 34361000 25371000 41195000 2866300 44681000 37419000 45720000 36641000 28477000 25475000 25254000 32831000 5 5 4 5 5 5 5 5 5 5 5 30173000 48443000 1438700 50746000 29356000 26775000 32711000 33831000 31237000 32032000 40872000 28104000 45211000 3830900 51248000 28319000 28914000 32959000 33987000 32185000 31358000 39129000 5 5 5 5 5 5 5 5 5 5 5 9456000000 5391000000 4065000000 10322 760 9597 54732;54733;54734;54735;54736;54737;54738;54739 66286;66287;66288;66289;66290;66291;66292;66293;66294 66290 9 KLEVEANNAFDQYR Unmodified 1695.8216 0.82164829 1063 P47756-2;P47756 CAPZB F-actin-capping protein subunit beta yes no 0 0 0 1 By MS/MS By MS/MS 5.29 1.03 2 2 2 1 3 4 50.288 50.49 3 2.831E-33 14524 20211116_3431_TMUAki_TMT10x_P_F4 228.73 187.52 32250000 54323000 146390 58615000 49391000 61683000 38394000 41444000 43089000 40984000 45685000 30028000 50705000 2885800 59540000 47081000 62195000 39665000 43145000 43722000 40046000 43990000 7 7 3 7 7 7 7 7 7 7 7 20177000 33534000 141980 35806000 40891000 51082000 28622000 26151000 26813000 25138000 28343000 18787000 31299000 1958700 36596000 38899000 50536000 29618000 27817000 27411000 24593000 27294000 4 4 2 4 4 4 4 4 4 4 4 12073000 20789000 4411.1 22809000 8500800 10601000 9772500 15292000 16275000 15846000 17342000 11241000 19406000 927130 22944000 8181400 11658000 10047000 15328000 16311000 15453000 16697000 3 3 1 3 3 3 3 3 3 3 3 3608100000 2545100000 1063000000 10323 1063 9598 54740;54741;54742;54743;54744;54745;54746 66295;66296;66297;66298;66299;66300;66301;66302 66295 8 KLEVEYEQK Unmodified 1164.6027 0.60265396 3253 Q9Y2W2 WBP11 WW domain-binding protein 11 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 39.718 39.87 3 0.00016333 10501 20211116_3431_TMUAki_TMT10x_P_F4 87.667 60.338 3220500 5328500 20913 5222500 3075800 2764900 3755400 2551000 2885300 2603800 3807800 2998700 4971600 279630 5298600 2967200 2963500 3746800 2606000 3006100 2540800 3644700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3220500 5328500 20913 5222500 3075800 2764900 3755400 2551000 2885300 2603800 3807800 2998700 4971600 279630 5298600 2967200 2963500 3746800 2606000 3006100 2540800 3644700 2 2 1 2 2 2 2 2 2 2 2 176870000 0 176870000 10324 3253 9599 54747;54748;54749;54750 66303;66304;66305 66303 3 KLEVEYEQKR Unmodified 1320.7038 0.70376498 3253 Q9Y2W2 WBP11 WW domain-binding protein 11 yes yes 0 0 0 2 By MS/MS By MS/MS 5 0 2 1 1 34.582 34.647 4 0.00053687 8580 20211116_3433_TMUAki_TMT10x_P_F5 101.43 76.921 2547400 3871100 56121 3841200 3186800 3832400 2797000 2358600 2488800 2510000 2868400 2372300 3612000 272450 3920700 3049300 3871600 2848000 2477000 2558900 2445100 2755300 2 2 2 2 2 2 2 2 2 2 2 1905600 2876700 42244 2825300 2497900 3166100 2020300 1755000 1830600 1836500 2077100 1774600 2684000 205650 2890900 2385700 3172700 2068400 1858000 1879400 1790300 1996100 1 1 1 1 1 1 1 1 1 1 1 641790 994420 13876 1016000 688900 666260 776720 603670 658180 673470 791300 597670 927980 66801 1029700 663600 698910 779600 619010 679500 654870 759220 1 1 1 1 1 1 1 1 1 1 1 319270000 222080000 97189000 10325 3253 9600 54751;54752 66306;66307 66306 2 KLEWPLTEVAEGVFETEAPGGYK Unmodified 2549.269 0.2689708 2862 Q9HC38-2;Q9HC38;Q9HC38-3 GLOD4 Glyoxalase domain-containing protein 4 yes no 0 0 0 1 By MS/MS 7 0 1 1 79.356 79.398 3 0.0017308 27996 20211116_3446_TMUAki_TMT10x_S_F7 60.991 50.283 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10326 2862 9601 54753 66308 66308 1 KLFDTLNEDLFQK Unmodified 1609.8352 0.83517309 1081 P48723 HSPA13 Heat shock 70 kDa protein 13 yes yes 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 76.914 77.023 3 0.00024207 26615 20211116_3435_TMUAki_TMT10x_P_F7 84.173 63.792 5935900 9153600 137390 8090200 5282600 10325000 5717300 5725000 5712100 6166600 6410300 5528000 8537300 611030 8361800 5084500 10277000 5776400 6066100 5836000 6004400 6162200 1 1 1 1 1 1 1 1 1 1 1 5935900 9153600 137390 8090200 5282600 10325000 5717300 5725000 5712100 6166600 6410300 5528000 8537300 611030 8361800 5084500 10277000 5776400 6066100 5836000 6004400 6162200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 428700000 428700000 0 10327 1081 9602 54754;54755 66309;66310 66310 2 KLFEELVR Unmodified 1032.5968 0.59678072 671 P14618-2 PKM Pyruvate kinase PKM yes yes 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 54.996 55.263 3 0.0015366 16313 20211116_3436_TMUAki_TMT10x_P_F8 106.2 70.319 6588100 10777000 85968 11353000 11455000 12827000 7860200 9581100 8214900 8550300 9248700 6134700 10058000 679310 11563000 10897000 12903000 8171900 9874400 8378400 8393100 8889900 3 3 2 3 3 3 3 3 3 3 3 4846300 7738700 62086 8181900 9670200 11204000 6305600 6938000 6438700 6176300 6803000 4512800 7222700 512050 8360800 9190400 11132000 6576100 7246600 6557400 6063400 6551400 2 2 1 2 2 2 2 2 2 2 2 1741800 3038400 23882 3171100 1784400 1622300 1554600 2643100 1776200 2374000 2445700 1621900 2835600 167260 3202600 1706700 1771200 1595800 2627700 1821100 2329700 2338500 1 1 1 1 1 1 1 1 1 1 1 1115400000 799510000 315880000 10328 671 9603 54756;54757;54758;54759 66311;66312;66313;66314 66312 4 KLFIGGLSFETTDDSLREHFEK Unmodified 2568.286 0.28601785 1168;1169 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 0 2 By MS/MS By MS/MS 5.45 2.68 2 1 1 1 3 3 5 6 67.566 67.65 4;5 1.0144E-35 22523 20211116_3435_TMUAki_TMT10x_P_F7 196.43 181.96 137240000 231140000 1710000 161910000 158230000 284300000 186180000 199000000 191250000 222270000 190510000 127790000 215420000 12744000 171900000 152490000 280160000 187550000 207330000 194320000 216120000 183800000 17 17 9 17 17 17 17 17 17 17 17 67031000 109260000 1195800 73641000 69747000 179250000 90141000 96040000 93908000 109980000 90288000 62421000 101820000 6709900 79220000 67462000 174220000 90484000 102260000 95242000 106840000 87210000 5 5 5 5 5 5 5 5 5 5 5 70211000 121890000 514110 88270000 88480000 105050000 96041000 102960000 97346000 112290000 100220000 65373000 113610000 6033800 92675000 85026000 105930000 97063000 105070000 99077000 109290000 96588000 12 12 4 12 12 12 12 12 12 12 12 34428000000 17854000000 16574000000 10329 1168;1169 9604 54760;54761;54762;54763;54764;54765;54766;54767;54768;54769;54770 66315;66316;66317;66318;66319;66320;66321;66322;66323;66324;66325;66326;66327;66328;66329;66330;66331 66316 17 KLFIGGLSFETTDESLR Unmodified 1911.9942 0.99419293 583 P09651;P09651-2;P09651-3;Q32P51 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 0 1 By MS/MS By MS/MS 5.85 2.58 4 1 2 2 2 4 11 10 16 73.965 73.996 2;3 1.3729E-89 22184 20211116_3447_TMUAki_TMT10x_S_F8 302.85 272.52 238810000 421040000 2314300 306350000 241830000 452550000 319000000 314860000 322510000 343060000 319300000 222360000 392450000 20340000 322810000 233850000 448910000 319650000 327920000 327830000 333880000 308110000 35 35 24 35 35 35 35 35 35 35 35 125150000 212590000 599150 148950000 116360000 291410000 163900000 160220000 166320000 176530000 162630000 116520000 198130000 9349800 158580000 112710000 285140000 163840000 170010000 168960000 171730000 157000000 14 14 9 14 14 14 14 14 14 14 14 113660000 208450000 1715200 157390000 125470000 161130000 155100000 154640000 156200000 166530000 156660000 105840000 194310000 10991000 164230000 121140000 163780000 155810000 157910000 158870000 162150000 151110000 21 21 15 21 21 21 21 21 21 21 21 91322000000 47332000000 43990000000 10330 583 9605 54771;54772;54773;54774;54775;54776;54777;54778;54779;54780;54781;54782;54783;54784;54785;54786;54787;54788;54789;54790;54791;54792;54793;54794;54795;54796 66332;66333;66334;66335;66336;66337;66338;66339;66340;66341;66342;66343;66344;66345;66346;66347;66348;66349;66350;66351;66352;66353;66354;66355;66356;66357;66358;66359;66360;66361;66362;66363;66364;66365;66366;66367;66368 66365 37 KLFIGGLSFETTEESLR Unmodified 1926.0098 0.0098429899 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 1 By MS/MS By MS/MS 6.15 2.32 2 3 4 4 6 7 72.788 72.82 3 1.7148E-48 24601 20211116_3446_TMUAki_TMT10x_S_F7 257.02 219.93 71481000 126620000 990920 97158000 63597000 154060000 112400000 96644000 115770000 134670000 108020000 66561000 118040000 6178800 102050000 62249000 152140000 111570000 102300000 117350000 129950000 104440000 16 16 11 16 16 16 16 16 16 16 16 36724000 63196000 699970 48936000 36257000 87057000 51761000 49441000 60661000 70234000 54428000 34197000 58915000 3424000 51500000 35180000 85491000 51969000 52789000 61101000 67738000 52698000 8 8 5 8 8 8 8 8 8 8 8 34757000 63425000 290940 48223000 27340000 67000000 60640000 47202000 55108000 64431000 53590000 32365000 59125000 2754900 50550000 27069000 66652000 59597000 49507000 56251000 62217000 51744000 8 8 6 8 8 8 8 8 8 8 8 26023000000 13370000000 12652000000 10331 772 9606 54797;54798;54799;54800;54801;54802;54803;54804;54805;54806;54807;54808;54809 66369;66370;66371;66372;66373;66374;66375;66376;66377;66378;66379;66380;66381;66382 66380 14 KLFLVQLQEK Unmodified 1244.7493 0.74925861 246 O43809 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 0 0 0 1 By MS/MS 3 0 1 1 61.799 61.525 3 5.199E-09 20786 20211116_3430_TMUAki_TMT10x_P_F3 126.66 91.434 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10332 246 9607 54810 66383 66383 1 KLFNLSKEDDVR Unmodified 1462.778 0.77799256 1365 P62753 RPS6 40S ribosomal protein S6 yes yes 0 0 0 2 By MS/MS By MS/MS 7 0 2 1 1 44.989 45.509 4 9.223E-06 13517 20211116_3435_TMUAki_TMT10x_P_F7 108.58 83.656 18190000 29365000 218440 35705000 49141000 39077000 22453000 30818000 33126000 24364000 31066000 16937000 27424000 1911600 36028000 46446000 39415000 24501000 31558000 33160000 24061000 30032000 4 4 2 4 4 4 4 4 4 4 4 10576000 16875000 160970 20125000 42235000 34061000 17029000 17939000 19663000 13789000 17917000 9847300 15759000 1315200 20510000 39863000 33477000 18673000 18928000 19827000 13638000 17338000 2 2 1 2 2 2 2 2 2 2 2 7614000 12489000 57475 15580000 6906100 5016300 5424200 12880000 13463000 10575000 13149000 7089200 11665000 596450 15518000 6583100 5938600 5828300 12630000 13333000 10423000 12694000 2 2 1 2 2 2 2 2 2 2 2 1469500000 1098300000 371250000 10333 1365 9608 54811;54812 66384;66385;66386;66387 66384 4 KLFTAESLIGLK Unmodified 1318.786 0.78603805 1072 P48444;P48444-2 ARCN1 Coatomer subunit delta yes no 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 71.24 71.16 3 1.5063E-12 23478 20211116_3442_TMUAki_TMT10x_S_F4 140.82 95.456 8078000 12793000 62619 14072000 8354000 12125000 8732600 5360600 6429400 6482700 8467000 7521800 11942000 731940 14236000 8023500 12320000 8766700 5825200 6713900 6285100 8104800 2 2 2 2 2 2 2 2 2 2 2 8078000 12793000 62619 14072000 8354000 12125000 8732600 5360600 6429400 6482700 8467000 7521800 11942000 731940 14236000 8023500 12320000 8766700 5825200 6713900 6285100 8104800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 782300000 782300000 0 10334 1072 9609 54813;54814;54815 66388;66389;66390 66390 3 KLFTAESLIGLKNPEK Unmodified 1787.0193 0.019285464 1072 P48444;P48444-2 ARCN1 Coatomer subunit delta yes no 0 0 0 2 By MS/MS 3 0 1 1 65.01 64.552 4 2.012E-05 23104 20211116_3441_TMUAki_TMT10x_S_F3 97.579 86.945 4131800 7709400 206260 6312700 5304000 4706800 4503300 5312200 6142600 6129700 6374700 3848700 7188500 551200 6514700 5078100 4907600 4660500 5395000 6185500 5952900 6142300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4131800 7709400 206260 6312700 5304000 4706800 4503300 5312200 6142600 6129700 6374700 3848700 7188500 551200 6514700 5078100 4907600 4660500 5395000 6185500 5952900 6142300 1 1 1 1 1 1 1 1 1 1 1 540180000 0 540180000 10335 1072 9610 54816 66391 66391 1 KLFVGGIKEDTEEHHLR Unmodified 2007.0538 0.05377349 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 2 By MS/MS By MS/MS 6.11 1.31 4 10 9 6 8 25 12 36.973 37.12 4;5;6 4.7509E-47 9393 20211116_3447_TMUAki_TMT10x_S_F8 243.09 0 75605000 120380000 1137800 138740000 173990000 154260000 96280000 118750000 128090000 109510000 119570000 70403000 112400000 8451900 140470000 164940000 155390000 102710000 122250000 128610000 107330000 115610000 61 61 44 61 61 61 61 61 61 61 61 45742000 70468000 616730 82893000 151820000 127550000 70482000 71454000 77483000 65593000 71583000 42594000 65800000 5699600 84355000 143550000 125920000 75962000 75305000 78310000 64303000 69237000 43 43 29 43 43 43 43 43 43 43 43 29863000 49917000 521050 55845000 22174000 26710000 25798000 47296000 50604000 43913000 47988000 27809000 46600000 2752300 56117000 21384000 29470000 26746000 46948000 50303000 43027000 46374000 18 18 15 18 18 18 18 18 18 18 18 15027000000 11617000000 3410500000 10336 772 9611 54817;54818;54819;54820;54821;54822;54823;54824;54825;54826;54827;54828;54829;54830;54831;54832;54833;54834;54835;54836;54837;54838;54839;54840;54841;54842;54843;54844;54845;54846;54847;54848;54849;54850;54851;54852;54853 66392;66393;66394;66395;66396;66397;66398;66399;66400;66401;66402;66403;66404;66405;66406;66407;66408;66409;66410;66411;66412;66413;66414;66415;66416;66417;66418;66419;66420;66421;66422;66423;66424;66425;66426;66427;66428;66429;66430;66431;66432;66433;66434;66435;66436;66437;66438;66439;66440;66441;66442;66443;66444;66445;66446;66447;66448;66449;66450;66451;66452 66452 61 KLFVGGLK Unmodified 860.54837 0.54837396 1601 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 0 0 0 1 By MS/MS By MS/MS 4 0.756 4 6 4 6 8 48.579 48.636 3 0.00071225 15684 20211116_3430_TMUAki_TMT10x_P_F3 114.28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10337 1601 9612 54854;54855;54856;54857;54858;54859;54860;54861;54862;54863;54864;54865;54866;54867 66453;66454;66455;66456;66457;66458;66459;66460;66461;66462;66463;66464;66465;66466 66454 14 KLFVGMLGK Oxidation (M) 1007.5838 0.58377319 1935 Q5SZQ8;Q5SZQ8-4;Q5SZQ8-3;Q5SZQ8-2;Q96J87;Q96J87-4;Q96J87-2;Q96J87-3 CELF3;CELF6 CUGBP Elav-like family member 3;CUGBP Elav-like family member 6 yes no 0 0 1 1 By MS/MS 2 0 1 1 59.333 59.07 3 0.055361 19295 20211116_3429_TMUAki_TMT10x_P_F2 48.796 27.895 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10338 1935 9613 54868 66467 66467 2523 1 KLFVQDLATR Unmodified 1189.6819 0.68190733 906 P33176 KIF5B Kinesin-1 heavy chain yes yes 0 0 0 1 By MS/MS 2 0 1 1 49.603 49.331 3 0.012453 15326 20211116_3429_TMUAki_TMT10x_P_F2 64.121 37.023 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10339 906 9614 54869 66468 66468 1 KLFYSTFATDDRK Unmodified 1590.8042 0.80420731 865 P30084 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 0 0 0 2 By MS/MS 2 0 1 1 49.328 49.055 4 7.2848E-12 15223 20211116_3429_TMUAki_TMT10x_P_F2 155.43 123.37 15384000 22752000 68398 30617000 25362000 21121000 14493000 10618000 12302000 10485000 15916000 14325000 21260000 1456600 30537000 24048000 21866000 15202000 11322000 12739000 10246000 15242000 3 3 2 3 3 3 3 3 3 3 3 15384000 22752000 68398 30617000 25362000 21121000 14493000 10618000 12302000 10485000 15916000 14325000 21260000 1456600 30537000 24048000 21866000 15202000 11322000 12739000 10246000 15242000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 668570000 668570000 0 10340 865 9615 54870 66469;66470;66471 66469 3 KLGCEVLGVSVDSQFTHLAWINTPR Unmodified 2826.4487 0.44868328 899 P32119 PRDX2 Peroxiredoxin-2 yes yes 0 0 0 1 By MS/MS 3 0 1 1 75.947 75.83 4 0.0037989 26538 20211116_3430_TMUAki_TMT10x_P_F3 50.705 37.647 5010200 8922700 136910 7184800 3730100 11750000 5447300 6524300 6415500 7073100 6457000 4666000 8319300 525050 7520700 3628000 11571000 5465600 6913600 6485800 6885400 6227500 1 1 1 1 1 1 1 1 1 1 1 5010200 8922700 136910 7184800 3730100 11750000 5447300 6524300 6415500 7073100 6457000 4666000 8319300 525050 7520700 3628000 11571000 5465600 6913600 6485800 6885400 6227500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 383700000 383700000 0 10341 899 9616 54871 66472 66472 1 KLGDVSPTQIDVSQFGSFKEDTK Unmodified 2525.2649 0.26494806 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 2 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 64.82 65.118 4 3.9824E-07 20266 20211116_3436_TMUAki_TMT10x_P_F8 88.239 80.793 11506000 22112000 180830 15749000 18227000 37377000 18692000 33182000 24752000 24835000 21739000 10715000 20609000 1211400 16840000 17499000 36649000 19123000 33699000 24809000 24599000 21064000 3 3 2 3 3 3 3 3 3 3 3 8374400 16161000 131550 11799000 12438000 31421000 14656000 24155000 17876000 17724000 15864000 7798300 15063000 868590 12639000 11990000 30636000 14850000 24733000 17974000 17575000 15366000 2 2 1 2 2 2 2 2 2 2 2 3131900 5951100 49288 3950000 5789000 5956000 4036200 9026900 6875900 7111500 5874600 2916500 5545500 342810 4201000 5509700 6012800 4273600 8965600 6835300 7024300 5698000 1 1 1 1 1 1 1 1 1 1 1 3821600000 2420100000 1401500000 10342 1057 9617 54872;54873;54874;54875 66473;66474;66475 66474 3 KLGEMWNNTAADDKQPYEK Oxidation (M) 2253.0372 0.037196727 574 P09429 HMGB1 High mobility group protein B1 yes yes 0 0 1 2 By MS/MS By MS/MS 6.56 0.831 1 3 4 1 6 3 44.284 44.577 4;5 1.2116E-08 11209 20211116_3434_TMUAki_TMT10x_P_F6 114.55 98.431 56398000 85963000 690010 165430000 259410000 127790000 119970000 32215000 47608000 34250000 94699000 52514000 80510000 7721100 162590000 245240000 130360000 126740000 37639000 53271000 33366000 89895000 14 14 11 14 14 14 14 14 14 14 14 41052000 61309000 576480 117140000 252690000 122040000 112600000 24867000 35238000 24716000 67948000 38226000 57417000 6594400 115640000 238780000 121840000 119140000 30182000 40395000 24145000 64535000 10 10 8 10 10 10 10 10 10 10 10 15346000 24654000 113530 48285000 6719400 5757100 7376700 7348000 12370000 9533500 26751000 14289000 23093000 1126600 46954000 6457800 8523900 7602700 7456100 12876000 9220900 25360000 4 4 3 4 4 4 4 4 4 4 4 8272600000 7384800000 887750000 10343 574 9618 54876;54877;54878;54879;54880;54881;54882;54883;54884 66476;66477;66478;66479;66480;66481;66482;66483;66484;66485;66486;66487;66488;66489 66478 546 14 KLGEMWNNTAADDKQPYEK Unmodified 2237.0423 0.042282105 574 P09429 HMGB1 High mobility group protein B1 yes yes 0 0 0 2 By MS/MS By MS/MS 7 0.816 2 2 2 4 2 50.429 50.65 4;5 1.1932E-50 13677 20211116_3434_TMUAki_TMT10x_P_F6 231.52 189.96 68981000 107220000 1407900 205030000 146240000 69028000 91477000 21246000 19684000 25307000 89820000 64236000 100420000 7769300 200220000 138900000 77636000 93430000 24134000 25656000 24549000 84475000 10 10 8 10 10 10 10 10 10 10 10 33979000 52017000 1149500 97307000 133200000 61366000 81218000 12847000 12489000 14675000 45450000 31646000 48707000 5220400 95533000 126470000 63642000 82973000 15565000 16882000 14257000 42824000 6 6 5 6 6 6 6 6 6 6 6 35002000 55205000 258440 107720000 13040000 7661500 10259000 8399200 7195700 10632000 44370000 32590000 51708000 2548900 104690000 12431000 13994000 10457000 8569300 8773400 10292000 41651000 4 4 3 4 4 4 4 4 4 4 4 6914500000 5045200000 1869300000 10344 574 9618 54885;54886;54887;54888;54889;54890 66490;66491;66492;66493;66494;66495;66496;66497;66498;66499 66490 10 KLGEMWSEQSAK Oxidation (M) 1408.6657 0.66566492 817 P26583 HMGB2 High mobility group protein B2 yes yes 0 0 1 1 By MS/MS By MS/MS 5.25 0.829 1 1 2 3 1 39.814 39.879 3 6.129E-06 9508 20211116_3445_TMUAki_TMT10x_S_F6 102.73 89.068 4078500 6051000 19866 9260900 17453000 7922200 7057700 3628000 3712700 3513900 6187800 3797500 5658200 533410 9200900 16474000 8056700 7598900 3902100 4011200 3436600 5892500 5 5 3 5 5 5 5 5 5 5 5 3572700 5287400 18312 8161800 17045000 7640000 6578500 3282300 3377800 3177000 5427600 3326600 4944500 493070 8115500 16081000 7717400 7121100 3554000 3649100 3107200 5172300 3 3 2 3 3 3 3 3 3 3 3 505820 763530 1554.4 1099100 408540 282230 479130 345700 334910 336950 760230 470970 713710 40337 1085400 393480 339330 477850 348020 362110 329450 720200 2 2 1 2 2 2 2 2 2 2 2 420340000 381660000 38675000 10345 817 9619 54891;54892;54893;54894 66500;66501;66502;66503;66504 66503 970 5 KLGEMWSEQSAK Unmodified 1392.6708 0.6707503 817 P26583 HMGB2 High mobility group protein B2 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 47.426 47.965 3 3.6775E-09 14508 20211116_3435_TMUAki_TMT10x_P_F7 152.16 130.29 7865500 11750000 87214 20840000 22833000 9048200 11918000 4633800 3700700 4127600 11898000 7323900 10998000 909660 20442000 21622000 9845800 12405000 4918900 4415200 4052100 11224000 2 2 1 2 2 2 2 2 2 2 2 3793900 5375400 0 9911200 19812000 7174600 8592700 2048400 1451200 1772200 5565200 3532300 5032700 505550 9749700 18713000 7362600 9081500 2333100 1934800 1742200 5241200 1 1 0 1 1 1 1 1 1 1 1 4071600 6374600 87214 10929000 3020200 1873600 3324900 2585300 2249500 2355400 6332600 3791700 5965200 404120 10692000 2908800 2483200 3323300 2585800 2480400 2309900 5982500 1 1 1 1 1 1 1 1 1 1 1 539300000 321200000 218100000 10346 817 9619 54895;54896 66505;66506 66505 2 KLGEWVGLCK Unmodified 1188.6325 0.6325143 801 P25398 RPS12 40S ribosomal protein S12 yes yes 0 0 0 1 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 57.839 57.62 3 0.00023239 20304 20211116_3441_TMUAki_TMT10x_S_F3 110.08 83.96 46047000 71146000 803330 104650000 55118000 37839000 40879000 20268000 20207000 23462000 49325000 42879000 66512000 4633300 103400000 52536000 42274000 41570000 21589000 22495000 22783000 46680000 5 5 3 5 5 5 5 5 5 5 5 19767000 28618000 178310 44425000 39254000 25299000 24509000 7047400 7294100 9199300 19258000 18406000 26762000 2064600 43918000 37277000 26543000 25099000 8150900 8598400 8895900 18207000 2 2 1 2 2 2 2 2 2 2 2 26280000 42529000 625020 60226000 15864000 12540000 16369000 13220000 12913000 14263000 30067000 24473000 39750000 2568700 59477000 15259000 15731000 16471000 13438000 13897000 13887000 28473000 3 3 2 3 3 3 3 3 3 3 3 3192700000 1824500000 1368100000 10347 801 9620 54897;54898;54899;54900;54901 66507;66508;66509;66510;66511;66512 66512 6 KLGGSLADSYLDEGFLLDK Unmodified 2040.0415 0.041537049 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 1 By MS/MS By MS/MS 6 1.58 1 1 3 2 2 3 7 5 77.321 77.319 3 5.4443E-18 24992 20211116_3445_TMUAki_TMT10x_S_F6 156.15 140.56 58893000 94345000 102730 92741000 56845000 68912000 64361000 36556000 43859000 47844000 60031000 54829000 88028000 4175700 94368000 54651000 70946000 64257000 39138000 46090000 46262000 57410000 9 9 2 9 9 9 9 9 9 9 9 32084000 50093000 87092 49976000 27194000 46245000 32989000 20486000 24153000 26529000 32008000 29869000 46741000 2132500 50936000 26191000 46763000 32886000 22310000 25237000 25661000 30634000 5 5 1 5 5 5 5 5 5 5 5 26809000 44253000 15641 42765000 29651000 22667000 31372000 16070000 19706000 21316000 28023000 24960000 41287000 2043200 43432000 28460000 24183000 31371000 16829000 20853000 20602000 26776000 4 4 1 4 4 4 4 4 4 4 4 21771000000 11310000000 10462000000 10348 1429 9621 54902;54903;54904;54905;54906;54907;54908;54909;54910;54911;54912;54913 66513;66514;66515;66516;66517;66518;66519;66520;66521;66522 66521 10 KLGGSLADSYLDEGFLLDKK Unmodified 2168.1365 0.13650007 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 2 By MS/MS By MS/MS 7.2 0.748 1 2 2 2 3 71.357 71.445 4 3.613E-41 22370 20211116_3447_TMUAki_TMT10x_S_F8 202.53 193.37 78580000 128580000 193170 124430000 115590000 151590000 104900000 141500000 112890000 122090000 116980000 73160000 119960000 6392900 127640000 110520000 152530000 107210000 143800000 114640000 120040000 112720000 7 7 2 7 7 7 7 7 7 7 7 35479000 56299000 0 57365000 42350000 85783000 49271000 61094000 47945000 53234000 50979000 33031000 52537000 2567700 58872000 40750000 85083000 49575000 63126000 48942000 52314000 49084000 3 3 0 3 3 3 3 3 3 3 3 43101000 72280000 193170 67065000 73242000 65807000 55626000 80410000 64943000 68860000 65999000 40130000 67426000 3825200 68767000 69774000 67446000 57634000 80673000 65698000 67728000 63634000 4 4 2 4 4 4 4 4 4 4 4 11985000000 6115000000 5869700000 10349 1429 9622 54914;54915;54916;54917;54918 66523;66524;66525;66526;66527;66528;66529 66529 7 KLGGTIDDCELVEGLVLTQK Unmodified 2187.1457 0.14568454 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 1 By MS/MS By MS/MS 5.26 1.58 1 2 3 4 4 4 1 12 7 76.711 76.711 3;4 3.4421E-32 24404 20211116_3434_TMUAki_TMT10x_P_F6 190.71 174.02 239960000 392790000 1986100 366440000 274710000 343020000 291460000 201400000 200580000 230250000 281870000 223440000 366420000 21491000 375340000 263900000 347700000 291950000 212780000 210910000 223690000 269400000 27 27 17 27 27 27 27 27 27 27 27 135560000 212480000 1472400 198530000 129780000 236150000 156230000 113500000 114620000 131270000 154300000 126230000 198210000 12160000 204080000 125170000 235490000 155800000 122120000 119840000 127470000 147620000 15 15 11 15 15 15 15 15 15 15 15 104410000 180320000 513650 167910000 144930000 106870000 135240000 87897000 85955000 98986000 127580000 97212000 168210000 9330300 171260000 138730000 112210000 136160000 90657000 91078000 96218000 121780000 12 12 6 12 12 12 12 12 12 12 12 43090000000 26416000000 16674000000 10350 1147 9623 54919;54920;54921;54922;54923;54924;54925;54926;54927;54928;54929;54930;54931;54932;54933;54934;54935;54936;54937 66530;66531;66532;66533;66534;66535;66536;66537;66538;66539;66540;66541;66542;66543;66544;66545;66546;66547;66548;66549;66550;66551;66552;66553;66554;66555;66556 66541 27 KLGIDDLVHFDFMDPPAPETLMR 2 Oxidation (M) 2688.2928 0.29275949 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 2 1 By MS/MS 7 0 1 1 75.975 76.082 4 0.0033353 26587 20211116_3446_TMUAki_TMT10x_S_F7 52.321 45.598 2513000 3754400 0 3614400 2899900 3261500 3084300 3247000 3235700 3032200 2904900 2339700 3502800 199540 3691900 2784300 3344100 3123600 3295600 3273400 2970200 2812500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2513000 3754400 0 3614400 2899900 3261500 3084300 3247000 3235700 3032200 2904900 2339700 3502800 199540 3691900 2784300 3344100 3123600 3295600 3273400 2970200 2812500 1 1 0 1 1 1 1 1 1 1 1 633470000 0 633470000 10351 196 9624 54938 66557 66557 148;149 1 KLGIQVK Unmodified 784.51707 0.51707383 1128 P49915;P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 0 1 By MS/MS 3 0 1 1 40.274 39.987 3 0.0059428 13029 20211116_3441_TMUAki_TMT10x_S_F3 86.472 32.918 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10352 1128 9625 54939 66558 66558 1 KLGNNCVFAPADVTSEK Unmodified 1848.904 0.90399771 2598 Q99714;Q99714-2 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 0 0 0 1 By MS/MS By MS/MS 6.86 0.639 2 4 1 3 4 50.611 51.034 3;4 1.4994E-05 15735 20211116_3435_TMUAki_TMT10x_P_F7 93.738 77.244 62541000 107860000 494480 126800000 91423000 97670000 60711000 82669000 83867000 77494000 88073000 58232000 100710000 5532300 127580000 86885000 100960000 63904000 84654000 84456000 75897000 84830000 8 8 6 8 8 8 8 8 8 8 8 31088000 51382000 82750 60343000 67018000 72956000 40857000 42332000 42042000 38489000 43118000 28942000 47978000 2639600 61116000 63574000 72857000 42848000 44471000 42757000 37748000 41561000 4 4 2 4 4 4 4 4 4 4 4 31454000 56474000 411730 66457000 24404000 24714000 19854000 40337000 41825000 39005000 44955000 29289000 52733000 2892700 66468000 23311000 28103000 21057000 40184000 41699000 38149000 43269000 4 4 4 4 4 4 4 4 4 4 4 3541500000 2343300000 1198200000 10353 2598 9626 54940;54941;54942;54943;54944;54945;54946 66559;66560;66561;66562;66563;66564;66565;66566 66561 8 KLGNNCVFAPADVTSEKDVQTALALAK Unmodified 2859.48 0.48004299 2598 Q99714;Q99714-2 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 0 0 0 2 By MS/MS 8 0 1 1 71.293 71.355 4 0.0043745 22851 20211116_3436_TMUAki_TMT10x_P_F8 53.865 43.536 1341800 2773500 0 1456200 2100100 6895700 3405600 6144200 5059600 5540300 3290900 1249200 2583100 105940 1659900 2045400 6672500 3437400 6266800 5012100 5435800 3229400 1 1 0 1 1 1 1 1 1 1 1 1341800 2773500 0 1456200 2100100 6895700 3405600 6144200 5059600 5540300 3290900 1249200 2583100 105940 1659900 2045400 6672500 3437400 6266800 5012100 5435800 3229400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 639840000 639840000 0 10354 2598 9627 54947 66567 66567 1 KLGVNNISGIEEVNMFTNQGTVIHFNNPK Oxidation (M) 3229.619 0.61899608 740 P20290;P20290-2 BTF3 Transcription factor BTF3 yes no 0 0 1 1 By MS/MS By MS/MS 1.4 0.49 3 2 2 3 67.869 67.684 4;5 7.0171E-53 21455 20211116_3440_TMUAki_TMT10x_S_F2 211.5 200.69 26580000 46970000 428350 41624000 24418000 41017000 26185000 25845000 26040000 26680000 31656000 24750000 43808000 2395000 42832000 23472000 41482000 26464000 27068000 26697000 26023000 30363000 7 7 4 7 7 7 7 7 7 7 7 18233000 31492000 428350 27988000 15477000 31990000 17259000 17980000 17718000 18032000 21712000 16980000 29373000 1872200 28860000 14910000 32028000 17428000 18990000 18146000 17609000 20821000 4 4 4 4 4 4 4 4 4 4 4 8347100 15478000 0 13636000 8941000 9026400 8925400 7864900 8322200 8648300 9943900 7770500 14436000 522720 13972000 8561100 9453700 9035500 8078500 8550400 8414100 9542300 3 3 0 3 3 3 3 3 3 3 3 6861200000 3448400000 3412800000 10355 740 9628 54948;54949;54950;54951;54952 66568;66569;66570;66571;66572;66573;66574 66574 848 7 KLGVNNISGIEEVNMFTNQGTVIHFNNPK Unmodified 3213.6241 0.62408146 740 P20290;P20290-2 BTF3 Transcription factor BTF3 yes no 0 0 0 1 By MS/MS By MS/MS 2 0.535 1 5 1 4 3 71.986 71.79 4;5;6 1.1632E-42 24424 20211116_3429_TMUAki_TMT10x_P_F2 187.26 175.52 31554000 56207000 346690 54127000 26239000 31329000 30864000 13340000 13320000 15684000 27752000 29380000 52440000 2600000 55025000 25279000 32918000 30522000 14541000 14831000 15221000 26325000 8 8 5 8 8 8 8 8 8 8 8 26470000 46573000 244190 45123000 20434000 26989000 25131000 10443000 10585000 12926000 22475000 24646000 43452000 2108800 45864000 19711000 28241000 24796000 11527000 11827000 12521000 21313000 6 6 4 6 6 6 6 6 6 6 6 5083500 9633800 102500 9004300 5804400 4340600 5732700 2897500 2734900 2758100 5277200 4733700 8987000 491160 9160600 5567600 4677100 5725900 3014700 3003700 2699400 5012000 2 2 1 2 2 2 2 2 2 2 2 9354200000 7574000000 1780200000 10356 740 9628 54953;54954;54955;54956;54957;54958;54959 66575;66576;66577;66578;66579;66580;66581;66582 66577 8 KLIELQAGKK Unmodified 1126.7074 0.7073938 666 P14314;P14314-2 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 2 By MS/MS 2 0 1 1 41.15 41.206 4 0.00031864 10701 20211116_3440_TMUAki_TMT10x_S_F2 110.66 76.283 833600 1276000 4801.5 1289100 758140 673200 805220 869790 878060 712990 993880 776200 1190700 72529 1305000 728420 728220 816560 869720 894200 702800 955180 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 833600 1276000 4801.5 1289100 758140 673200 805220 869790 878060 712990 993880 776200 1190700 72529 1305000 728420 728220 816560 869720 894200 702800 955180 1 1 1 1 1 1 1 1 1 1 1 73326000 0 73326000 10357 666 9629 54960 66583 66583 1 KLIHLEIKPAIR Unmodified 1429.9133 0.91330425 1496;948 P36507;Q02750;Q02750-2 MAP2K2;MAP2K1 Dual specificity mitogen-activated protein kinase kinase 2;Dual specificity mitogen-activated protein kinase kinase 1 no no 0 0 0 2 By MS/MS By MS/MS 4.4 0.8 1 1 3 3 2 45.121 45.243 4;5 3.3799E-07 12886 20211116_3442_TMUAki_TMT10x_S_F4 127.02 86.429 4947400 7960300 40314 8861200 8886700 8637900 5795600 5982200 5782400 5363700 5798900 4606700 7431200 490780 8972900 8445000 8753800 6040000 6197800 5883800 5263900 5593500 3 3 1 3 3 3 3 3 3 3 3 2993500 4757400 0 5248100 7105000 6963500 3800100 3853000 3725200 3434800 3624200 2787200 4441000 293630 5344900 6728700 6918300 4025000 4061900 3789500 3371800 3499300 2 2 0 2 2 2 2 2 2 2 2 1953900 3202900 40314 3613100 1781800 1674400 1995600 2129200 2057200 1928900 2174700 1819500 2990200 197150 3628000 1716300 1835600 2014900 2135900 2094300 1892100 2094200 1 1 1 1 1 1 1 1 1 1 1 1827000000 1085100000 741900000 10358 948;1496 9630 54961;54962;54963;54964;54965 66584;66585;66586 66586 3 KLIVQPNTR Unmodified 1067.6451 0.64512789 3013 Q9NY33;Q9NY33-4;Q9NY33-2 DPP3 Dipeptidyl peptidase 3 yes no 0 0 0 1 By MS/MS 3 0 1 1 34.061 33.821 3 0.0064023 10565 20211116_3441_TMUAki_TMT10x_S_F3 67.704 38.977 365340 625400 7281 608700 360800 361970 420580 416470 456260 416370 522740 340220 583500 37011 618470 347900 385190 424590 420690 464960 406660 502210 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 365340 625400 7281 608700 360800 361970 420580 416470 456260 416370 522740 340220 583500 37011 618470 347900 385190 424590 420690 464960 406660 502210 1 1 1 1 1 1 1 1 1 1 1 19844000 0 19844000 10359 3013 9631 54966 66587 66587 1 KLLADQAEAR Unmodified 1113.6142 0.6142217 1456 P84098 RPL19 60S ribosomal protein L19 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 3 1 33.041 33.082 3 0.0003424 8109 20211116_3433_TMUAki_TMT10x_P_F5 102.66 67.393 1779300 2719700 6539.4 2582900 2815200 2887500 1936500 1288900 1648000 1368600 1948700 1656700 2537300 156790 2649200 2677000 2886900 2001300 1393600 1699800 1333400 1870500 3 3 1 3 3 3 3 3 3 3 3 1685000 2551700 6539.4 2424700 2714400 2801600 1823600 1218500 1583600 1299600 1839700 1568800 2380500 150290 2488200 2580000 2795300 1888900 1321200 1630600 1265900 1766700 2 2 1 2 2 2 2 2 2 2 2 94357 168030 0 158250 100840 85878 112910 70444 64399 69010 109030 87844 156750 6498.8 161050 96904 91604 112400 72358 69222 67458 103790 1 1 0 1 1 1 1 1 1 1 1 139580000 121790000 17796000 10360 1456 9632 54967;54968;54969;54970 66588;66589;66590 66589 3 KLLASIAEDYR Unmodified 1277.698 0.69795133 1744 Q14C86;Q14C86-6;Q14C86-5;Q14C86-4;Q14C86-2;Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 yes no 0 0 0 1 By MS/MS 8 0 1 1 55.056 55.172 3 0.00656 16219 20211116_3436_TMUAki_TMT10x_P_F8 65.895 43.155 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10361 1744 9633 54971 66591 66591 1 KLLDIVAR Unmodified 926.5913 0.59130141 1578 Q12931;Q12931-2 TRAP1 Heat shock protein 75 kDa, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 51.452 51.248 3 0.00085124 16084 20211116_3429_TMUAki_TMT10x_P_F2 120.99 16.788 5883200 9113300 9866.9 9281400 8871500 10641000 3525800 7201800 7040000 6566700 7935000 5477600 8504400 509470 9477000 8370700 10679000 3964700 7476900 7040000 6439600 7626900 2 2 1 2 2 2 2 2 2 2 2 2862900 4260700 0 4273600 5892500 7941700 643650 3410300 3068200 3237000 3760400 2665400 3975700 250450 4413700 5516100 7762400 1002400 3690900 3039800 3168600 3606100 1 1 0 1 1 1 1 1 1 1 1 3020300 4852600 9866.9 5007800 2979000 2698900 2882200 3791500 3971900 3329700 4174600 2812300 4528600 259020 5063300 2854600 2916400 2962300 3786000 4000200 3271000 4020800 1 1 1 1 1 1 1 1 1 1 1 407640000 276340000 131310000 10362 1578 9634 54972;54973 66592;66593 66592 2 KLLDLVQQSCNYK Unmodified 1607.8341 0.83412723 1245 P55769 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 63.715 63.498 3 5.2819E-09 20368 20211116_3442_TMUAki_TMT10x_S_F4 124.07 100.46 6262100 10403000 59148 12022000 8570300 9246100 6881500 7370800 7287400 7332800 8433500 5831100 9712900 603690 12109000 8178500 9548400 7081100 7587600 7436600 7163100 8100000 2 2 1 2 2 2 2 2 2 2 2 3146700 5030000 0 6105600 5828100 6878800 4507700 3853500 3706900 3919200 4161600 2929900 4697500 295500 6164300 5554900 6892000 4616600 4072600 3822300 3825000 4000400 1 1 0 1 1 1 1 1 1 1 1 3115500 5372700 59148 5916400 2742200 2367400 2373900 3517300 3580500 3413500 4271900 2901200 5015400 308190 5944200 2623700 2656500 2464500 3515000 3614300 3338100 4099500 1 1 1 1 1 1 1 1 1 1 1 1614900000 1178500000 436420000 10363 1245 9635 54974;54975 66594;66595 66595 2 KLLELDSFLK Unmodified 1204.7067 0.7067251 1307 P61289;P61289-2;P61289-3 PSME3 Proteasome activator complex subunit 3 yes no 0 0 0 1 By MS/MS 5.33 3.09 1 1 1 3 72.552 72.681 3 3.5962E-09 23440 20211116_3436_TMUAki_TMT10x_P_F8 138.45 110.83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10364 1307 9636 54976;54977;54978 66596;66597;66598 66598 3 KLLGLGQK Unmodified 855.55419 0.55418762 1091 P49321;P49321-3;P49321-2 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 44.48 44.657 3 0.0020138 12537 20211116_3442_TMUAki_TMT10x_S_F4 88.294 29.475 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10365 1091 9637 54979;54980 66599;66600 66599 2 KLLMMAGIDDCYTSAR Oxidation (M) 1859.858 0.85797549 687 P15880 RPS2 40S ribosomal protein S2 yes yes 0 0 1 1 By MS/MS By MS/MS 4.82 3.16 3 2 2 4 5 6 56.058 56.086 3 6.659E-11 15304 20211116_3436_TMUAki_TMT10x_P_F8 133.16 127.04 90036000 157070000 1233700 141450000 116150000 141480000 105350000 92122000 74406000 97390000 112930000 83840000 146500000 8800700 145400000 111160000 143020000 106470000 96312000 78417000 94900000 107750000 18 18 16 18 18 18 18 18 18 18 18 47670000 81011000 843460 72365000 71256000 103840000 66241000 50133000 39959000 52419000 60718000 44391000 75560000 5065100 74905000 68248000 102640000 66639000 53751000 42538000 51101000 57930000 9 9 8 9 9 9 9 9 9 9 9 42366000 76055000 390240 69081000 44890000 37640000 39110000 41989000 34447000 44972000 52211000 39448000 70941000 3735600 70497000 42910000 40382000 39829000 42561000 35879000 43799000 49816000 9 9 8 9 9 9 9 9 9 9 9 9798600000 5812500000 3986100000 10366 687 9638 54981;54982;54983;54984;54985;54986;54987;54988;54989;54990;54991 66601;66602;66603;66604;66605;66606;66607;66608;66609;66610;66611;66612;66613;66614;66615;66616;66617;66618 66606 774;775 18 KLLMMAGIDDCYTSAR Unmodified 1843.8631 0.86306087 687 P15880 RPS2 40S ribosomal protein S2 yes yes 0 0 0 1 By MS/MS By MS/MS 4.2 3.12 1 2 2 3 2 63.448 63.36 3 4.5479E-22 19450 20211116_3428_TMUAki_TMT10x_P_F1 178.34 160.2 41516000 66042000 583440 68231000 47746000 51188000 49936000 24484000 21769000 23981000 41425000 38660000 61632000 4054300 69197000 45870000 52598000 49666000 26226000 24076000 23442000 39353000 6 6 5 6 6 6 6 6 6 6 6 33681000 52313000 402000 53729000 38818000 45607000 42174000 21379000 19332000 20274000 33290000 31364000 48819000 3220400 54591000 37328000 46418000 41896000 22926000 21162000 19847000 31681000 5 5 4 5 5 5 5 5 5 5 5 7834600 13728000 181440 14502000 8927700 5580700 7762200 3104900 2436700 3706400 8134900 7296100 12813000 833950 14606000 8542000 6179900 7769600 3299800 2914100 3595100 7671100 1 1 1 1 1 1 1 1 1 1 1 4340000000 2881000000 1459000000 10367 687 9638 54992;54993;54994;54995;54996 66619;66620;66621;66622;66623;66624;66625 66619 7 KLLMMAGIDDCYTSAR 2 Oxidation (M) 1875.8529 0.85289012 687 P15880 RPS2 40S ribosomal protein S2 yes yes 0 0 2 1 By MS/MS By MS/MS 7.25 0.829 1 1 2 2 2 47.746 47.893 3 3.4963E-05 14918 20211116_3446_TMUAki_TMT10x_S_F7 83.806 75.015 10488000 19739000 34740 17006000 19536000 25756000 12022000 31033000 32276000 23192000 19978000 9765800 18408000 531700 17673000 18545000 25818000 13214000 31052000 31512000 22973000 19653000 5 5 3 5 5 5 5 5 5 5 5 5205000 10226000 6758.1 9228900 14795000 19960000 8235700 13362000 13832000 9992600 9218800 4846400 9538300 280450 9645900 14021000 19524000 8870100 13818000 13663000 9898100 9035900 2 2 1 2 2 2 2 2 2 2 2 5283200 9512700 27982 7776800 4741000 5796100 3785800 17671000 18444000 13199000 10759000 4919400 8869900 251250 8026600 4523600 6293700 4343800 17234000 17849000 13075000 10617000 3 3 2 3 3 3 3 3 3 3 3 3948400000 2139700000 1808700000 10368 687 9638 54997;54998;54999;55000 66626;66627;66628;66629 66627 774;775 4 KLLSHGK Unmodified 781.48102 0.48102268 1499 Q02878 RPL6 60S ribosomal protein L6 yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 30.191 29.944 3 0.010068 7527 20211116_3429_TMUAki_TMT10x_P_F2 78.334 17.898 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10369 1499 9639 55001;55002 66630;66631 66630 2 KLLSSDRNPPIDDLIK Unmodified 1823.0153 0.015262719 106;98 O00629;O00505 KPNA4;KPNA3 Importin subunit alpha-3;Importin subunit alpha-4 no no 0 0 0 2 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 54.856 55.183 4 2.108E-42 17319 20211116_3435_TMUAki_TMT10x_P_F7 220.8 163.12 28844000 51133000 615010 48819000 41969000 51920000 32198000 48563000 41783000 41629000 42291000 26861000 47704000 3148400 50013000 40034000 52626000 33468000 49338000 42105000 40943000 40781000 7 7 7 7 7 7 7 7 7 7 7 13755000 23473000 249220 23606000 26731000 37319000 20442000 23659000 19692000 19457000 19725000 12809000 21904000 1554400 24278000 25488000 36865000 21041000 24619000 20068000 19176000 19027000 4 4 4 4 4 4 4 4 4 4 4 15089000 27660000 365800 25213000 15239000 14601000 11756000 24904000 22090000 22172000 22566000 14052000 25800000 1594000 25736000 14546000 15761000 12427000 24719000 22038000 21767000 21754000 3 3 3 3 3 3 3 3 3 3 3 4563100000 2743200000 1819900000 10370 106;98 9640 55003;55004;55005;55006 66632;66633;66634;66635;66636;66637;66638 66632 7 KLLVGSEDYGR Unmodified 1235.651 0.65100113 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 39.654 40.066 3 4.257E-05 9959 20211116_3445_TMUAki_TMT10x_S_F6 95.417 71.074 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10371 1663 9641 55007;55008 66639;66640 66639 2 KLLVGSEDYGRDLTGVQNLR Unmodified 2232.1862 0.18624423 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 2 By MS/MS 8 0 1 1 55.42 55.367 4 2.8814E-24 15800 20211116_3447_TMUAki_TMT10x_S_F8 168.83 149.99 3688800 6878400 28965 6670200 5109900 3587400 4038000 6555400 5767600 5526400 6066200 3434800 6417500 352720 6773300 4874400 3911400 4205500 6484500 5802500 5439800 5842600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3688800 6878400 28965 6670200 5109900 3587400 4038000 6555400 5767600 5526400 6066200 3434800 6417500 352720 6773300 4874400 3911400 4205500 6484500 5802500 5439800 5842600 1 1 1 1 1 1 1 1 1 1 1 782890000 0 782890000 10372 1663 9642 55009 66641 66641 1 KLLVPCALDPPNPNCYVCASKPEVTVR Unmodified 3096.5559 0.55586724 3087 Q9UBT2;Q9UBT2-2 UBA2 SUMO-activating enzyme subunit 2 yes no 0 0 0 2 By MS/MS 3 0 1 1 65.572 65.114 4 1.7985E-12 23333 20211116_3441_TMUAki_TMT10x_S_F3 114.21 107.56 1821200 3089500 17382 3254700 2493700 1814200 1850700 1787500 1491800 1886000 2211700 1695900 2883500 176610 3287200 2376000 1936400 1899700 1821700 1558900 1838000 2111300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1821200 3089500 17382 3254700 2493700 1814200 1850700 1787500 1491800 1886000 2211700 1695900 2883500 176610 3287200 2376000 1936400 1899700 1821700 1558900 1838000 2111300 1 1 1 1 1 1 1 1 1 1 1 518490000 0 518490000 10373 3087 9643 55010 66642 66642 1 KLMHQAALLGQALQDSR Oxidation (M) 1895.0047 0.0047148075 1871 Q16881;Q16881-3;Q16881-4;Q16881-5;Q16881-2;Q16881-6;Q16881-7 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 0 0 1 1 By MS/MS By MS/MS 2.42 0.64 1 5 6 7 5 47.563 47.4 3;4 1.4182E-21 14431 20211116_3429_TMUAki_TMT10x_P_F2 166.62 151.03 9719100 15899000 79276 17504000 14922000 18618000 11410000 16846000 17282000 15552000 15615000 9049100 14841000 744310 17760000 14217000 18859000 11939000 17179000 17266000 15242000 15115000 11 11 5 11 11 11 11 11 11 11 11 4962700 7743900 71340 8719400 10695000 14212000 7577800 8380900 8569600 7860200 7597400 4620900 7229600 462190 8908500 10178000 14008000 7880200 8799800 8640200 7698200 7359000 6 6 3 6 6 6 6 6 6 6 6 4756400 8154700 7936.4 8784300 4227500 4406700 3832300 8465100 8712800 7691600 8017800 4428200 7611500 282120 8851500 4039500 4850500 4059100 8378800 8625600 7543900 7756000 5 5 2 5 5 5 5 5 5 5 5 4565100000 2996000000 1569100000 10374 1871 9644 55011;55012;55013;55014;55015;55016;55017;55018;55019;55020;55021;55022 66643;66644;66645;66646;66647;66648;66649;66650;66651;66652;66653;66654 66643 2484 12 KLMHQAALLGQALQDSR Unmodified 1879.0098 0.0098001854 1871 Q16881;Q16881-3;Q16881-4;Q16881-5;Q16881-2;Q16881-6;Q16881-7 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 55.578 55.74 3 2.0244E-15 15838 20211116_3444_TMUAki_TMT10x_S_F5 150.11 124.72 7476600 12435000 135420 13569000 7854100 7706200 7540500 10430000 9215900 9688100 11177000 6962400 11608000 745540 13675000 7530900 8273400 7716900 10445000 9371800 9492400 10721000 4 4 3 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7476600 12435000 135420 13569000 7854100 7706200 7540500 10430000 9215900 9688100 11177000 6962400 11608000 745540 13675000 7530900 8273400 7716900 10445000 9371800 9492400 10721000 4 4 3 4 4 4 4 4 4 4 4 465260000 0 465260000 10375 1871 9644 55023;55024 66655;66656;66657;66658;66659 66656 5 KLMVEPLQAILIR Oxidation (M) 1538.9218 0.92182003 1656 Q13617;Q13617-2 CUL2 Cullin-2 yes no 0 0 1 1 By MS/MS 3 0 1 1 67.727 67.436 3 0.0070663 23205 20211116_3430_TMUAki_TMT10x_P_F3 63.257 49.351 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10376 1656 9645 55025 66660 66660 2219 1 KLNCQVIGASVDSHFCHLAWVNTPK Unmodified 2880.4163 0.41633729 1533 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 1 By MS/MS By MS/MS 3.6 1.02 1 1 2 1 3 2 59.669 59.59 5 1.8723E-38 18768 20211116_3442_TMUAki_TMT10x_S_F4 192.63 177.18 18639000 28428000 201390 33830000 20291000 29375000 19185000 11866000 9977300 13012000 17893000 17355000 26547000 1632900 34064000 19432000 29806000 19233000 12982000 10834000 12661000 17016000 4 4 3 4 4 4 4 4 4 4 4 14307000 21396000 73032 25323000 16110000 25864000 15287000 9739000 8341500 10354000 13898000 13321000 19979000 1156300 25564000 15423000 25953000 15334000 10734000 8987100 10087000 13235000 3 3 2 3 3 3 3 3 3 3 3 4332000 7032200 128350 8507300 4181000 3510600 3898000 2126900 1635800 2657600 3995000 4034500 6567300 476660 8500000 4009600 3853500 3898700 2248200 1846800 2573600 3780800 1 1 1 1 1 1 1 1 1 1 1 5904700000 4679000000 1225700000 10377 1533 9646 55026;55027;55028;55029;55030 66661;66662;66663;66664 66664 4 KLNCQVIGASVDSHFCHLAWVNTPKK Unmodified 3008.5113 0.51130031 1533 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 2 By MS/MS 4 0 1 1 55.967 56.119 6 7.7276E-06 16915 20211116_3431_TMUAki_TMT10x_P_F4 76.471 69.195 3016700 5006300 47085 6555700 4114400 6456500 3639600 2263700 2147100 2560500 3547200 2809200 4677200 309360 6577000 3936000 6489300 3670400 2522000 2299300 2488400 3378500 1 1 1 1 1 1 1 1 1 1 1 3016700 5006300 47085 6555700 4114400 6456500 3639600 2263700 2147100 2560500 3547200 2809200 4677200 309360 6577000 3936000 6489300 3670400 2522000 2299300 2488400 3378500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 772920000 772920000 0 10378 1533 9647 55031 66665 66665 1 KLNEILQAR Unmodified 1083.64 0.64004252 2588 Q99613;Q99613-2;B5ME19 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 0 0 0 1 By MS/MS 1 0 1 1 45.38 45.159 3 0.068946 14117 20211116_3439_TMUAki_TMT10x_S_F1 46.706 14.644 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10379 2588 9648 55032 66666 66666 1 KLNIGGGGLGYR Unmodified 1203.6724 0.67240528 2125 Q86XP3;Q86XP3-2 DDX42 ATP-dependent RNA helicase DDX42 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 43.222 43.228 3 6.7718E-07 13160 20211116_3430_TMUAki_TMT10x_P_F3 121.02 87.146 7654000 11380000 33279 14644000 16292000 13562000 8341800 9925200 11260000 8382800 11367000 7126400 10631000 719200 14692000 15419000 13801000 8967400 10229000 11331000 8250600 10962000 5 5 2 5 5 5 5 5 5 5 5 4589200 6703800 0 8502500 13630000 11126000 5835200 5799300 6585800 4902500 6655800 4272500 6262100 439740 8586100 12869000 11053000 6349700 6138300 6669600 4825000 6418500 3 3 0 3 3 3 3 3 3 3 3 3064800 4675900 33279 6141400 2661900 2435500 2506500 4125900 4673800 3480300 4711600 2853900 4368600 279460 6106300 2550400 2747700 2617700 4090300 4661300 3425700 4544000 2 2 2 2 2 2 2 2 2 2 2 437090000 316670000 120430000 10380 2125 9649 55033;55034;55035;55036 66667;66668;66669;66670;66671 66667 5 KLNKEELPVIPK Unmodified 1406.8497 0.84970094 2816 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 yes yes 0 0 0 2 By MS/MS 8 0 1 1 48.908 49.001 4 0.011888 13760 20211116_3436_TMUAki_TMT10x_P_F8 61.375 39.502 9692700 15425000 292120 17188000 24093000 22379000 12501000 12992000 13467000 11992000 13890000 9027000 14399000 1277500 17487000 22828000 22267000 13316000 13654000 13674000 11753000 13386000 3 3 3 3 3 3 3 3 3 3 3 9692700 15425000 292120 17188000 24093000 22379000 12501000 12992000 13467000 11992000 13890000 9027000 14399000 1277500 17487000 22828000 22267000 13316000 13654000 13674000 11753000 13386000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 475340000 475340000 0 10381 2816 9650 55037 66672;66673;66674 66674 3 KLNVTEQEK Unmodified 1087.5873 0.58733824 520 P06733 ENO1 Alpha-enolase yes yes 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 33.824 33.889 3 0.00064664 6755 20211116_3444_TMUAki_TMT10x_S_F5 101.93 68.043 11223000 15628000 1971.1 16911000 11660000 14410000 7979800 6120500 7482400 7840200 8127200 10449000 14588000 20678 17124000 11088000 14648000 8271300 6692700 7656700 7586300 7820000 2 2 1 2 2 2 2 2 2 2 2 10986000 15288000 0 16511000 11480000 14226000 7732500 6001100 7358800 7707600 7876200 10229000 14270000 0 16724000 10914000 14449000 8027800 6567700 7521100 7457300 7581800 1 1 0 1 1 1 1 1 1 1 1 236830 340190 1971.1 399620 180150 183810 247240 119390 123560 132660 251020 220530 317660 20678 400250 174540 199110 243450 125040 135640 129010 238210 1 1 1 1 1 1 1 1 1 1 1 443930000 340530000 103400000 10382 520 9651 55038;55039 66675;66676 66676 2 KLNVTEQEKIDK Unmodified 1443.7933 0.79330827 520 P06733 ENO1 Alpha-enolase yes yes 0 0 0 2 By MS/MS By MS/MS 6.18 0.716 2 5 4 6 5 31.869 32.057 4 1.0447E-09 10041 20211116_3433_TMUAki_TMT10x_P_F5 158.81 119.13 68266000 105660000 961310 98286000 111450000 132260000 84377000 76383000 93334000 69394000 91123000 63568000 98563000 7032500 101300000 106230000 131390000 87280000 80271000 94481000 68062000 87971000 17 17 13 17 17 17 17 17 17 17 17 47438000 73654000 810720 65632000 90537000 111440000 65466000 52748000 64794000 48171000 63502000 44175000 68697000 5181700 68207000 86223000 109390000 67695000 56456000 65900000 47235000 61298000 12 12 9 12 12 12 12 12 12 12 12 20828000 32004000 150590 32654000 20909000 20821000 18912000 23634000 28540000 21223000 27621000 19394000 29865000 1850800 33089000 20006000 22004000 19585000 23816000 28581000 20827000 26673000 5 5 4 5 5 5 5 5 5 5 5 6002200000 3355200000 2647000000 10383 520 9652 55040;55041;55042;55043;55044;55045;55046;55047;55048;55049;55050 66677;66678;66679;66680;66681;66682;66683;66684;66685;66686;66687;66688;66689;66690;66691;66692;66693 66677 17 KLPAFATIPIHQLQHEK Unmodified 1970.1102 0.11016616 2106 Q86UK7;Q86UK7-2;Q86UK7-3 ZNF598 Zinc finger protein 598 yes no 0 0 0 1 By MS/MS 3 0 1 1 53.18 53.029 5 9.4181E-06 17290 20211116_3430_TMUAki_TMT10x_P_F3 94.203 75.839 1583000 2186100 24736 2813900 2473500 3112900 1950800 1734200 1622100 1500400 1964000 1474100 2042200 166760 2830800 2360000 3121800 1995900 1825800 1676700 1475000 1884000 1 1 1 1 1 1 1 1 1 1 1 1583000 2186100 24736 2813900 2473500 3112900 1950800 1734200 1622100 1500400 1964000 1474100 2042200 166760 2830800 2360000 3121800 1995900 1825800 1676700 1475000 1884000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 279930000 279930000 0 10384 2106 9653 55051 66694 66694 1 KLPDVPNPLQILYIR Unmodified 1778.0454 0.045440635 2250 Q8NFF5;Q8NFF5-3;Q8NFF5-2 FLAD1 FAD synthase;Molybdenum cofactor biosynthesis protein-like region;FAD synthase region yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 78.432 78.433 3 3.8334E-24 25148 20211116_3444_TMUAki_TMT10x_S_F5 193.47 161.88 18362000 31982000 268880 29459000 24081000 24793000 23863000 18163000 15624000 20047000 22113000 17099000 29833000 1853000 30161000 23101000 25396000 23961000 18857000 16485000 19501000 21131000 3 3 3 3 3 3 3 3 3 3 3 6449900 11111000 30523 10030000 6314600 11116000 7000000 6427900 5291700 7224500 7472700 6005700 10363000 561290 10325000 6073800 11152000 7011700 6795900 5535500 7023000 7141200 1 1 1 1 1 1 1 1 1 1 1 11912000 20871000 238360 19429000 17767000 13677000 16863000 11735000 10332000 12823000 14640000 11093000 19469000 1291700 19836000 17027000 14244000 16950000 12062000 10950000 12478000 13990000 2 2 2 2 2 2 2 2 2 2 2 4025900000 2179300000 1846600000 10385 2250 9654 55052;55053;55054;55055 66695;66696;66697 66696 3 KLPEELGRDQNTVETLQR Unmodified 2125.1127 0.11274493 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 2 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 42.54 42.667 4 1.2475E-40 11694 20211116_3433_TMUAki_TMT10x_P_F5 211.13 192.53 7189400 12348000 35728 15342000 13495000 13535000 7898500 13677000 14118000 10967000 12182000 6694100 11534000 692620 15413000 12800000 13903000 8496900 13818000 14022000 10822000 11811000 4 4 1 4 4 4 4 4 4 4 4 3521200 5878200 35728 7339000 10247000 10318000 5697500 6631000 6905700 5204600 5892900 3278800 5490400 412890 7428400 9713000 10244000 6054500 6885300 6936600 5141800 5716000 2 2 1 2 2 2 2 2 2 2 2 3668100 6470200 0 8003300 3247900 3216800 2201000 7046100 7212300 5762000 6288900 3415300 6043100 279720 7984800 3086700 3658400 2442400 6932300 7085200 5680300 6095300 2 2 0 2 2 2 2 2 2 2 2 1333700000 1002300000 331430000 10386 1475 9655 55056;55057;55058;55059 66698;66699;66700;66701 66699 4 KLPFEIK Unmodified 873.53239 0.53238955 2009 Q6PI48 DARS2 Aspartate--tRNA ligase, mitochondrial yes yes 0 0 0 1 By MS/MS 1 0 1 1 53.687 53.687 3 0.017979 15524 20211116_3428_TMUAki_TMT10x_P_F1 66.692 30.297 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10387 2009 9656 55060 66702 66702 1 KLPHELCTLIR Unmodified 1378.7755 0.77549014 1559 Q10713;Q10713-2 PMPCA Mitochondrial-processing peptidase subunit alpha yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 46.951 46.78 4 5.8067E-08 13011 20211116_3440_TMUAki_TMT10x_S_F2 140.63 121.96 1191500 1986300 30507 2293200 2198900 2269900 1514700 1847500 1637800 1577600 1830200 1109600 1854600 140410 2317500 2093000 2304400 1576000 1891700 1667600 1551900 1759600 2 2 1 2 2 2 2 2 2 2 2 607980 1052600 30507 1210700 1723400 1788800 1112600 984470 882390 847290 986730 566320 982810 94459 1232600 1639000 1768600 1153400 1037400 911450 833160 948630 1 1 1 1 1 1 1 1 1 1 1 583500 933650 0 1082500 475500 481070 402050 863040 755440 730310 843510 543290 871750 45955 1084900 454030 535770 422590 854230 756190 718720 810980 1 1 0 1 1 1 1 1 1 1 1 316040000 191990000 124050000 10388 1559 9657 55061;55062 66703;66704 66704 2 KLPIDVTEGEVISLGLPFGK Unmodified 2111.1878 0.18780736 818 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 4.38 2.51 4 8 2 3 4 4 4 15 14 69.259 69.225 3;4 6.3018E-32 27501 20211116_3435_TMUAki_TMT10x_P_F7 183.56 165.86 257910000 417970000 1258100 383190000 288100000 388600000 315700000 253790000 239470000 278360000 294390000 240130000 389880000 19183000 393450000 276890000 392510000 316430000 265580000 248900000 270850000 282290000 28 28 9 28 28 28 28 28 28 28 28 151180000 238940000 1025500 213820000 144280000 271610000 168730000 153570000 138070000 165480000 167630000 140760000 222860000 12502000 220770000 138960000 270480000 168920000 162450000 142850000 161120000 160790000 16 16 5 16 16 16 16 16 16 16 16 106730000 179030000 232630 169370000 143820000 116980000 146970000 100230000 101400000 112890000 126760000 99372000 167010000 6680700 172680000 137930000 122030000 147510000 103130000 106050000 109730000 121500000 12 12 4 12 12 12 12 12 12 12 12 83077000000 44538000000 38539000000 10389 818 9658 55063;55064;55065;55066;55067;55068;55069;55070;55071;55072;55073;55074;55075;55076;55077;55078;55079;55080;55081;55082;55083;55084;55085;55086;55087;55088;55089;55090;55091 66705;66706;66707;66708;66709;66710;66711;66712;66713;66714;66715;66716;66717;66718;66719;66720;66721;66722;66723;66724;66725;66726;66727;66728;66729;66730;66731;66732;66733 66717 29 KLPIQEFHLSR Unmodified 1366.7721 0.77211932 978 P39748;P39748-2 FEN1 Flap endonuclease 1 yes no 0 0 0 1 By MS/MS 2 0 1 1 47.124 47.07 4 1.0093E-05 13115 20211116_3440_TMUAki_TMT10x_S_F2 108.24 101.3 525730 786400 0 984050 420700 443360 364300 583390 631650 726740 647460 489410 734530 30066 981850 401180 488160 380750 590370 631450 703870 624090 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 525730 786400 0 984050 420700 443360 364300 583390 631650 726740 647460 489410 734530 30066 981850 401180 488160 380750 590370 631450 703870 624090 1 1 0 1 1 1 1 1 1 1 1 124100000 0 124100000 10390 978 9659 55092 66734 66734 1 KLPLEVTTRPSTEEPVR Unmodified 1951.0738 0.07384023 3358 Q9Y6X9;Q9Y6X9-2 MORC2 MORC family CW-type zinc finger protein 2 yes no 0 0 0 2 By MS/MS 6.5 0.5 1 1 2 40.374 40.609 4 1.4959E-35 9642 20211116_3434_TMUAki_TMT10x_P_F6 202.53 177.47 1877600 3099300 49898 3763400 4952500 5069500 2976400 2800500 2722500 2530300 2764200 1748600 2894500 243670 3811900 4701900 5032900 3114600 2953800 2782300 2482300 2665300 2 2 1 2 2 2 2 2 2 2 2 1877600 3099300 49898 3763400 4952500 5069500 2976400 2800500 2722500 2530300 2764200 1748600 2894500 243670 3811900 4701900 5032900 3114600 2953800 2782300 2482300 2665300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 536710000 536710000 0 10391 3358 9660 55093;55094 66735;66736 66735 2 KLPPLPAVER Unmodified 1118.6812 0.68117905 445 O95793;O95793-2;O95793-3 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 46.004 45.966 3 0.035243 14520 20211116_3439_TMUAki_TMT10x_S_F1 53.08 28.858 8606400 13376000 46756 14723000 15258000 14486000 9626400 8680500 9675400 8602700 10829000 8013600 12486000 829680 14921000 14490000 14642000 10060000 9116400 9881900 8405100 10411000 4 4 2 4 4 4 4 4 4 4 4 6004400 9320800 46756 10615000 12923000 12578000 7218400 6336900 7404200 6309800 7962200 5591000 8702100 635820 10767000 12250000 12553000 7625900 6757100 7544100 6163600 7663600 3 3 2 3 3 3 3 3 3 3 3 2602000 4054800 0 4107500 2335800 1907900 2408100 2343600 2271300 2292900 2867000 2422500 3783700 193860 4153700 2240300 2089100 2434600 2359300 2337800 2241400 2747300 1 1 0 1 1 1 1 1 1 1 1 446140000 262540000 183600000 10392 445 9661 55095;55096;55097;55098 66737;66738;66739;66740 66740 4 KLPPLPSLTSQPHQVLASEPIPFSDLQQVSR Unmodified 3408.8405 0.84053982 1978 Q6IAA8 LAMTOR1 Ragulator complex protein LAMTOR1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.67 0.471 2 4 4 2 75.341 75.185 4;5 1.085E-35 27346 20211116_3441_TMUAki_TMT10x_S_F3 171.93 169.19 9341700 15913000 136600 14476000 10366000 14358000 10920000 9253300 8683200 9778100 11293000 8698800 14843000 882300 14868000 9959200 14520000 10979000 9681400 9024100 9528200 10813000 6 6 3 6 6 6 6 6 6 6 6 5338900 7933300 57572 7435200 4863200 9314300 5454800 4542800 4458200 5096200 6065500 4971300 7400800 465050 7648400 4679900 9265700 5471300 4876200 4636100 4954400 5801400 3 3 2 3 3 3 3 3 3 3 3 4002700 7980000 79030 7041200 5502500 5043700 5465600 4710400 4225000 4681900 5227100 3727500 7442700 417250 7219600 5279300 5253900 5507500 4805200 4388000 4573800 5011300 3 3 1 3 3 3 3 3 3 3 3 3613200000 2385600000 1227600000 10393 1978 9662 55099;55100;55101;55102;55103;55104 66741;66742;66743;66744;66745;66746 66744 6 KLPQGRPVPPLGPETR Unmodified 1740.9999 0.99988743 2123 Q86X10;Q86X10-3;Q86X10-2 RALGAPB Ral GTPase-activating protein subunit beta yes no 0 0 0 2 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 37.326 37.077 4 8.4724E-11 11852 20211116_3441_TMUAki_TMT10x_S_F3 136.34 115.5 1131800 1862400 18052 2045700 2081200 2046000 1396400 1656300 1826400 1645000 1813400 1054000 1738500 123960 2074100 1979400 2075500 1465600 1703400 1838800 1607100 1749700 2 2 2 2 2 2 2 2 2 2 2 751270 1215100 1028.4 1202900 1689500 1737100 1066200 1039100 1135500 1027200 1138500 699510 1133700 76385 1236000 1604400 1721000 1116200 1091300 1152300 1003700 1098200 1 1 1 1 1 1 1 1 1 1 1 380540 647370 17023 842820 391650 308890 330230 617260 690940 617760 674860 354450 604790 47570 838030 375020 354540 349350 612040 686560 603310 651510 1 1 1 1 1 1 1 1 1 1 1 218090000 118180000 99911000 10394 2123 9663 55105;55106 66747;66748 66748 2 KLPQVEHVLPLLK Unmodified 1512.9392 0.93918465 1010 P42285 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0 2 1 1 59.901 59.563 4 2.4325E-06 19956 20211116_3430_TMUAki_TMT10x_P_F3 110.98 97.072 7977400 12121000 30220 13222000 9355600 10716000 7637200 6060000 6772400 6745600 7453200 7427700 11314000 672690 13373000 8926900 10967000 7809800 6416900 6951800 6559800 7168800 3 3 2 3 3 3 3 3 3 3 3 5670600 8329800 283.26 9085000 7620300 8962700 5639600 4027900 4834800 4695700 5060300 5279600 7775400 461540 9213000 7254500 9027300 5799200 4364400 4961800 4558600 4874500 2 2 1 2 2 2 2 2 2 2 2 2306900 3791100 29937 4137100 1735400 1753200 1997600 2032100 1937600 2049800 2392900 2148200 3538800 211150 4160400 1672300 1939300 2010600 2052500 1990000 2001200 2294300 1 1 1 1 1 1 1 1 1 1 1 1553300000 560470000 992860000 10395 1010 9664 55107;55108 66749;66750;66751 66749 3 KLPQVEHVLPLLKR Unmodified 1669.0403 0.040295678 1010 P42285 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 0 0 0 2 By MS/MS 5.5 0.5 1 1 2 52.018 52.177 5 0.00096958 14752 20211116_3445_TMUAki_TMT10x_S_F6 76.868 62.306 9029600 13392000 58934 13920000 5346400 6549200 7042800 7429500 8105200 6908500 10441000 8407900 12498000 751950 14053000 5172600 7146300 7088000 7493800 8282100 6768700 10000000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9029600 13392000 58934 13920000 5346400 6549200 7042800 7429500 8105200 6908500 10441000 8407900 12498000 751950 14053000 5172600 7146300 7088000 7493800 8282100 6768700 10000000 2 2 2 2 2 2 2 2 2 2 2 542030000 0 542030000 10396 1010 9665 55109;55110 66752;66753 66752 2 KLPSVEGLHAIVVSDRDGVPVIK Unmodified 2427.3849 0.38494403 3114 Q9UHA4;Q9UHA4-2 LAMTOR3 Ragulator complex protein LAMTOR3 yes no 0 0 0 2 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 62.329 62.3 5 8.7138E-08 19077 20211116_3436_TMUAki_TMT10x_P_F8 98.299 84.138 15030000 23985000 0 25770000 17225000 25868000 16638000 17082000 17082000 17969000 20097000 13993000 22387000 1067600 26165000 16487000 26149000 16921000 17838000 17466000 17513000 19294000 4 4 0 4 4 4 4 4 4 4 4 7119300 10995000 0 11797000 8666400 16605000 8246100 8389400 7824900 8363000 9497400 6627600 10263000 462990 12050000 8289500 16435000 8373300 8943500 8038300 8168800 9110000 2 2 0 2 2 2 2 2 2 2 2 7910600 12989000 0 13973000 8558200 9262900 8391500 8692700 9257500 9606000 10600000 7365100 12124000 604640 14115000 8197900 9714100 8547400 8894300 9427700 9344100 10184000 2 2 0 2 2 2 2 2 2 2 2 2691200000 1853900000 837310000 10397 3114 9666 55111;55112;55113 66754;66755;66756;66757 66755 4 KLPVESIQIVLEELRK Unmodified 1893.1299 0.12989855 2634 Q9BRG1 VPS25 Vacuolar protein-sorting-associated protein 25 yes yes 0 0 0 2 By MS/MS By matching 2 0 2 1 1 77.947 77.906 4 0.00010045 26930 20211116_3429_TMUAki_TMT10x_P_F2 82.482 65.989 3104500 4962100 0 5995500 305450 8355900 72920 0 129330 0 0 2890200 4634000 172280 6078700 284050 8179100 87870 0 124510 0 0 1 1 0 1 1 1 1 0 1 0 0 3104500 4962100 0 5995500 305450 8355900 72920 0 129330 0 0 2890200 4634000 172280 6078700 284050 8179100 87870 0 124510 0 0 1 1 0 1 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1674200000 596400000 1077800000 10398 2634 9667 55114;55115 66758 66758 1 KLPVGFTFSFPCQQSK Unmodified 1869.9447 0.94474031 730 P19367;P19367-4;P19367-2;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 1 By MS/MS 6 0 1 1 69.949 69.864 3 3.0174E-07 21974 20211116_3445_TMUAki_TMT10x_S_F6 106.6 85.659 12970000 21475000 32118 20743000 15776000 11158000 13860000 12198000 10784000 12638000 13712000 12076000 20035000 1099700 21070000 15078000 11981000 14063000 12363000 11210000 12325000 13136000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12970000 21475000 32118 20743000 15776000 11158000 13860000 12198000 10784000 12638000 13712000 12076000 20035000 1099700 21070000 15078000 11981000 14063000 12363000 11210000 12325000 13136000 2 2 1 2 2 2 2 2 2 2 2 595970000 0 595970000 10399 730 9668 55116 66759;66760 66759 2 KLQDLAGGIFPEDEIPEK Unmodified 1998.031 0.030972362 1253 P56182 RRP1 Ribosomal RNA processing protein 1 homolog A yes yes 0 0 0 1 By MS/MS 6 0 1 1 73.037 72.981 3 0.0891 22883 20211116_3434_TMUAki_TMT10x_P_F6 32.305 22.556 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10400 1253 9669 55117 66761 66761 1 KLQDVFEFR Unmodified 1180.6241 0.6240581 802 P25440;P25440-4;P25440-3;P25440-2 BRD2 Bromodomain-containing protein 2 yes no 0 0 0 1 By MS/MS 7 0 1 1 57.067 57.592 3 8.1848E-05 18914 20211116_3446_TMUAki_TMT10x_S_F7 97.813 74.494 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10401 802 9670 55118 66762 66762 1 KLQEESDLELAK Unmodified 1401.7351 0.73512469 360 O75822;O75822-2;O75822-3 EIF3J Eukaryotic translation initiation factor 3 subunit J yes no 0 0 0 1 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 47.215 47.239 3 7.1128E-17 13665 20211116_3442_TMUAki_TMT10x_S_F4 210.38 148.94 28009000 38261000 228360 51801000 43265000 34303000 26850000 17790000 25343000 20174000 31676000 26080000 35752000 2658200 51627000 41080000 35654000 28047000 18992000 26073000 19604000 30361000 6 6 4 6 6 6 6 6 6 6 6 16376000 21478000 136970 29366000 34310000 26921000 17088000 10126000 14250000 11499000 17799000 15249000 20071000 1692400 29364000 32471000 27199000 18146000 11185000 14747000 11174000 17060000 3 3 2 3 3 3 3 3 3 3 3 11632000 16783000 91387 22435000 8954500 7382500 9761600 7663500 11093000 8674800 13877000 10831000 15681000 965780 22263000 8608800 8455600 9900600 7807800 11326000 8430600 13301000 3 3 2 3 3 3 3 3 3 3 3 1745900000 924720000 821130000 10402 360 9671 55119;55120;55121;55122;55123 66763;66764;66765;66766;66767;66768 66767 6 KLQEQEVFFK Unmodified 1294.6921 0.69213767 2789 Q9H2G2;Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase yes no 0 0 0 1 By MS/MS 7 0 1 1 51.962 52.465 3 0.00060215 16817 20211116_3446_TMUAki_TMT10x_S_F7 95.401 48.14 4735700 8351500 0 8611000 4445200 4385400 3915800 6855900 7119700 6644900 7197900 4409300 7793800 383220 8703100 4248600 4783800 4098800 6839600 7105700 6498400 6941100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4735700 8351500 0 8611000 4445200 4385400 3915800 6855900 7119700 6644900 7197900 4409300 7793800 383220 8703100 4248600 4783800 4098800 6839600 7105700 6498400 6941100 1 1 0 1 1 1 1 1 1 1 1 227750000 0 227750000 10403 2789 9672 55124 66769 66769 1 KLQLEETMPSPYGR Oxidation (M) 1663.824 0.82395647 1500 Q02880;Q02880-2 TOP2B DNA topoisomerase 2-beta yes no 0 0 1 1 By MS/MS By MS/MS 6.2 0.748 1 2 2 2 3 42.142 42.245 3 2.5322E-06 10616 20211116_3445_TMUAki_TMT10x_S_F6 106.58 94.217 2576600 4082200 0 5077800 4738500 4833700 2822700 4172200 4623200 3539400 4021600 2398800 3812900 219320 5106200 4493700 4924400 3019100 4256400 4603200 3482800 3898100 3 3 0 3 3 3 3 3 3 3 3 1449000 2170400 0 2818900 3731200 3963700 1963700 2306200 2585900 1991500 2251800 1349000 2027600 131560 2847100 3531800 3930100 2103600 2419000 2591600 1958000 2182600 1 1 0 1 1 1 1 1 1 1 1 1127600 1911900 0 2258900 1007300 869980 859020 1866000 2037300 1547900 1769800 1049800 1785300 87755 2259200 961880 994330 915570 1837400 2011500 1524900 1715500 2 2 0 2 2 2 2 2 2 2 2 279770000 173870000 105890000 10404 1500 9673 55125;55126;55127;55128;55129 66770;66771;66772;66773;66774;66775 66773 2032 6 KLQLEETMPSPYGR Unmodified 1647.829 0.82904185 1500 Q02880;Q02880-2 TOP2B DNA topoisomerase 2-beta yes no 0 0 0 1 By MS/MS 7 0 1 1 50.618 51.291 3 2.008E-20 15824 20211116_3435_TMUAki_TMT10x_P_F7 161.84 142.26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10405 1500 9673 55130 66776 66776 1 KLQSQYASSEATISQLR Unmodified 1908.9905 0.99050453 1768 Q15075 EEA1 Early endosome antigen 1 yes yes 0 0 0 1 By MS/MS 8 0 1 1 45.99 46.127 3 2.0981E-51 12547 20211116_3436_TMUAki_TMT10x_P_F8 236.16 210.57 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10406 1768 9674 55131 66777 66777 1 KLRPLYDIPYMFEAR Oxidation (M) 1927.0026 0.0025895425 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 1 2 By MS/MS By MS/MS 3 0 2 1 1 59.455 59.117 4 0.0053659 19737 20211116_3430_TMUAki_TMT10x_P_F3 59.862 45.956 10077000 16496000 39527 18152000 9256800 11490000 10761000 9185600 10042000 10125000 12364000 9381000 15399000 645080 18301000 8902100 12064000 10815000 9483700 10330000 9849700 11855000 2 2 1 2 2 2 2 2 2 2 2 1538800 2767400 39527 2688000 2230000 3686600 2067500 2313300 2593600 2615300 2479000 1433000 2582000 174090 2762800 2136500 3663200 2122000 2430400 2611400 2541800 2394900 1 1 1 1 1 1 1 1 1 1 1 8537900 13729000 0 15464000 7026800 7803400 8693600 6872300 7448700 7509400 9884700 7947900 12817000 470990 15539000 6765500 8401200 8692600 7053300 7718700 7307800 9460000 1 1 0 1 1 1 1 1 1 1 1 1122500000 603330000 519200000 10407 2048 9675 55132;55133 66778 66778 2560 1 KLSEEEILENPDLFLTSEATDYGR Unmodified 2768.3392 0.33923521 1701 Q14257;Q14257-2 RCN2 Reticulocalbin-2 yes no 0 0 0 1 By MS/MS By MS/MS 1.83 0.898 3 1 2 2 4 77.61 77.555 3;4 5.628E-38 25293 20211116_3428_TMUAki_TMT10x_P_F1 192.27 179.72 37922000 58953000 352240 62605000 36524000 49621000 44589000 23643000 23996000 30714000 39472000 35310000 55023000 2576400 63415000 35234000 50767000 44169000 25561000 25862000 29706000 37598000 7 7 3 7 7 7 7 7 7 7 7 23063000 33933000 251540 36516000 17560000 33061000 23754000 13878000 13117000 17269000 21114000 21474000 31673000 1247300 37018000 17001000 33462000 23442000 15180000 14094000 16726000 20120000 3 3 1 3 3 3 3 3 3 3 3 14859000 25020000 100700 26089000 18964000 16559000 20835000 9764300 10879000 13445000 18358000 13836000 23350000 1329100 26397000 18233000 17305000 20728000 10381000 11768000 12980000 17478000 4 4 2 4 4 4 4 4 4 4 4 8286100000 3113200000 5172900000 10408 1701 9676 55134;55135;55136;55137;55138;55139 66779;66780;66781;66782;66783;66784;66785 66779 7 KLSEFGIR Unmodified 948.53927 0.53926584 3087 Q9UBT2;Q9UBT2-2 UBA2 SUMO-activating enzyme subunit 2 yes no 0 0 0 1 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 44.194 44.089 3 0.05269 11658 20211116_3428_TMUAki_TMT10x_P_F1 49.742 16.192 1337200 1950700 2510.4 2452900 2694800 2199800 1473500 1488300 1901400 1440100 1884700 1244900 1822100 118910 2463100 2552500 2240700 1571800 1547700 1915000 1408500 1818700 2 2 1 2 2 2 2 2 2 2 2 702450 956140 0 1163400 2138000 1702700 932450 746000 986210 757030 1020500 653950 892950 65036 1180300 2018900 1679900 1010500 807100 1002200 738900 983340 1 1 0 1 1 1 1 1 1 1 1 634710 994580 2510.4 1289400 556790 497100 541070 742330 915180 683110 864290 591000 929150 53870 1282800 533630 560790 561230 740600 912860 669600 835320 1 1 1 1 1 1 1 1 1 1 1 140690000 86721000 53967000 10409 3087 9677 55140;55141;55142 66786;66787;66788 66786 3 KLSELLR Unmodified 857.53345 0.53345218 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 1 By MS/MS By MS/MS 4 3.29 2 1 2 2 3 45.052 45.026 3 0.008588 11652 20211116_3447_TMUAki_TMT10x_S_F8 93.143 5.4468 10567000 15595000 52705 18886000 18863000 14313000 11409000 10257000 10496000 10236000 14366000 9839600 14564000 1037600 18966000 17902000 14772000 11934000 10632000 10855000 9997400 13739000 6 6 4 6 6 6 6 6 6 6 6 5210600 7565000 35893 9130100 13495000 9814600 5911200 5033700 5266500 5062200 7009500 4851800 7064800 581470 9213900 12751000 9848800 6372600 5360100 5447800 4942800 6707900 3 3 3 3 3 3 3 3 3 3 3 5356800 8030300 16812 9755500 5368000 4498300 5498000 5222800 5229500 5173300 7356700 4987800 7499500 456090 9751700 5151100 4923200 5561700 5272200 5407400 5054600 7030900 3 3 1 3 3 3 3 3 3 3 3 633190000 381400000 251790000 10410 544 9678 55143;55144;55145;55146;55147 66789;66790;66791;66792;66793;66794 66794 6 KLSGLNAFDIAEELVK Unmodified 1745.9564 0.95635086 454 O95983;O95983-2 MBD3 Methyl-CpG-binding domain protein 3 yes no 0 0 0 1 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 78.616 78.627 3 9.6185E-08 27279 20211116_3435_TMUAki_TMT10x_P_F7 116.82 100.32 25591000 40450000 385670 38238000 29464000 33817000 30822000 21117000 21449000 23532000 29531000 23830000 37736000 2535300 39099000 28309000 34437000 30903000 22184000 22518000 22883000 28237000 4 4 4 4 4 4 4 4 4 4 4 10952000 17076000 166390 15165000 9686700 17586000 11701000 9251700 9404100 10638000 12032000 10199000 15927000 1045400 15642000 9348800 17579000 11693000 9868500 9760900 10332000 11525000 2 2 2 2 2 2 2 2 2 2 2 14639000 23374000 219270 23072000 19777000 16231000 19121000 11865000 12045000 12894000 17499000 13632000 21809000 1490000 23457000 18960000 16859000 19210000 12315000 12757000 12551000 16712000 2 2 2 2 2 2 2 2 2 2 2 5097900000 2707400000 2390500000 10411 454 9679 55148;55149;55150;55151;55152 66795;66796;66797;66798 66795 4 KLSSSDAPAQDTGSSAAAVETDASR Unmodified 2421.1256 0.12555404 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4;Q7Z4S6-6 KIF21A Kinesin-like protein KIF21A yes no 0 0 0 1 By MS/MS 4 0 1 1 36.732 36.76 3 2.5337E-74 9114 20211116_3431_TMUAki_TMT10x_P_F4 257.11 238.76 131770 217100 177.05 381220 1229700 1005800 450520 371290 560430 168690 345290 122690 203190 26467 386660 1159500 971830 501130 403450 557700 173100 339750 1 1 1 1 1 1 1 1 1 1 1 131770 217100 177.05 381220 1229700 1005800 450520 371290 560430 168690 345290 122690 203190 26467 386660 1159500 971830 501130 403450 557700 173100 339750 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 167960000 167960000 0 10412 2082 9680 55153 66799 66799 1 KLSTIALALGVER Unmodified 1369.8293 0.82929985 869;870 P30153;P30154;P30154-2;P30154-4;P30154-5 PPP2R1A;PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform no no 0 0 0 1 By MS/MS By MS/MS 3.75 0.433 1 3 2 2 78.127 77.981 3 1.2231E-12 21241 20211116_3442_TMUAki_TMT10x_S_F4 131.24 106.02 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10413 869;870 9681 55154;55155;55156;55157 66800;66801;66802;66803 66803 4 KLSVACFYGGTPYGGQFER Unmodified 2136.0099 0.0098597649 2918 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 1 By MS/MS By MS/MS 2.67 0.471 2 4 3 3 61.664 61.342 3;4 8.5932E-19 20693 20211116_3430_TMUAki_TMT10x_P_F3 159.77 152.02 38983000 64403000 845600 62532000 39702000 51482000 42177000 36941000 35173000 37803000 45572000 36302000 60087000 3798000 63760000 38166000 52802000 42436000 38319000 36458000 36885000 43640000 7 7 4 7 7 7 7 7 7 7 7 24945000 40886000 669300 37737000 23072000 39097000 27482000 23199000 22928000 24076000 28200000 23231000 38139000 2618200 38741000 22271000 39388000 27505000 24415000 23711000 23478000 27040000 4 4 2 4 4 4 4 4 4 4 4 14038000 23517000 176300 24795000 16630000 12385000 14694000 13742000 12245000 13727000 17373000 13071000 21949000 1179800 25019000 15895000 13413000 14931000 13903000 12746000 13407000 16600000 3 3 2 3 3 3 3 3 3 3 3 10211000000 5366900000 4844000000 10414 2918 9682 55158;55159;55160;55161;55162;55163 66804;66805;66806;66807;66808;66809;66810 66807 7 KLTALDYHNPAGFNCKDETEFR Unmodified 2625.2282 0.2281854 3220 Q9Y224 C14orf166 UPF0568 protein C14orf166 yes yes 0 0 0 2 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 49.432 49.83 5 2.6696E-11 15761 20211116_3446_TMUAki_TMT10x_S_F7 120.32 117.19 17955000 35561000 339830 31212000 31399000 48056000 30286000 34896000 31736000 30752000 29394000 16719000 33166000 1814800 32400000 30088000 47621000 30823000 36020000 32139000 30205000 28428000 4 4 3 4 4 4 4 4 4 4 4 13514000 27404000 221980 22713000 26519000 42217000 25744000 25931000 23410000 22044000 21542000 12583000 25553000 1330600 23794000 25410000 41439000 26082000 27071000 23851000 21690000 20838000 3 3 2 3 3 3 3 3 3 3 3 4440900 8156900 117850 8498700 4880500 5838600 4541500 8964300 8326300 8707500 7852200 4135800 7612500 484180 8606200 4678300 6182300 4741500 8948900 8288200 8514800 7589400 1 1 1 1 1 1 1 1 1 1 1 5833900000 3895300000 1938600000 10415 3220 9683 55164;55165;55166 66811;66812;66813;66814 66814 4 KLTATPTPLGGMTGFHMQTEDR 2 Oxidation (M) 2420.1464 0.1464296 345 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 2 1 By MS/MS By MS/MS 6.2 2.64 1 2 2 2 3 39.873 40.153 4 3.2433E-15 9422 20211116_3447_TMUAki_TMT10x_S_F8 139.45 118.25 1736000 3055400 42083 3348100 3702300 5090200 2613800 4075700 4644500 3378400 3326500 1616700 2852100 208960 3420900 3525000 5055300 2771100 4174200 4589300 3328300 3249700 7 7 6 7 7 7 7 7 7 7 7 1365700 2359600 38415 2554600 3359700 4740700 2321300 3279600 3712200 2742200 2641100 1271900 2202500 176950 2625100 3197700 4661800 2452000 3392200 3677600 2700300 2580900 4 4 4 4 4 4 4 4 4 4 4 370360 695800 3667.9 793410 342630 349550 292450 796010 932320 636240 685390 344860 649620 32010 795880 327380 393510 319070 782020 911710 627970 668810 3 3 2 3 3 3 3 3 3 3 3 1116600000 780470000 336110000 10416 345 9684 55167;55168;55169;55170;55171 66815;66816;66817;66818;66819;66820;66821 66821 252;253 7 KLTATPTPLGGMTGFHMQTEDR Oxidation (M) 2404.1515 0.15151498 345 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 1 1 By MS/MS By MS/MS 6.2 2.64 1 2 2 2 3 46.596 46.762 4 7.3004E-09 12238 20211116_3447_TMUAki_TMT10x_S_F8 101.75 91.28 6246600 10320000 64291 11102000 8781700 9131500 6407600 7056200 6629300 6586200 8694700 5816000 9632700 529840 11241000 8359100 9377400 6630500 7265000 6807800 6451800 8323500 5 5 3 5 5 5 5 5 5 5 5 2834800 4583900 33268 4860600 5631700 6442200 3847100 3067100 2848200 2842200 3926900 2639200 4278300 231030 4962700 5352200 6389400 3964700 3282000 2979500 2785100 3754800 2 2 1 2 2 2 2 2 2 2 2 3411700 5736200 31024 6241300 3150100 2689300 2560500 3989100 3781200 3744000 4767700 3176800 5354400 298810 6278400 3006900 2988000 2665900 3983000 3828300 3666700 4568700 3 3 2 3 3 3 3 3 3 3 3 1375600000 764620000 611000000 10417 345 9684 55172;55173;55174;55175;55176 66822;66823;66824;66825;66826 66825 252;253 5 KLTFLYLANDVIQNSK Unmodified 1866.0251 0.025099124 2905;2529 Q9NQG5;Q96P16;Q96P16-3 RPRD1B;RPRD1A Regulation of nuclear pre-mRNA domain-containing protein 1B;Regulation of nuclear pre-mRNA domain-containing protein 1A no no 0 0 0 1 By MS/MS 6 0 1 1 78.591 78.573 3 1.1694E-10 25528 20211116_3445_TMUAki_TMT10x_S_F6 131.82 112.25 8107200 14580000 228700 14982000 10119000 8304900 10116000 6290000 5581200 7533500 10400000 7550300 13607000 913470 15156000 9716700 8827100 10121000 6534100 6047300 7306400 9883500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8107200 14580000 228700 14982000 10119000 8304900 10116000 6290000 5581200 7533500 10400000 7550300 13607000 913470 15156000 9716700 8827100 10121000 6534100 6047300 7306400 9883500 1 1 1 1 1 1 1 1 1 1 1 895630000 0 895630000 10418 2905;2529 9685 55177 66827 66827 1 KLTFLYLANDVIQNSKR Unmodified 2022.1262 0.12621015 2905;2529 Q9NQG5;Q96P16;Q96P16-3 RPRD1B;RPRD1A Regulation of nuclear pre-mRNA domain-containing protein 1B;Regulation of nuclear pre-mRNA domain-containing protein 1A no no 0 0 0 2 By MS/MS 8 0 1 1 76.917 76.926 4 3.0114E-21 25151 20211116_3436_TMUAki_TMT10x_P_F8 164.59 125.07 5536700 8764700 0 6845900 5928500 13729000 7226500 8564600 6879000 7509400 7004500 5154900 8171200 425230 7222400 5714600 13446000 7251500 8937000 7017900 7377600 6753100 1 1 0 1 1 1 1 1 1 1 1 5536700 8764700 0 6845900 5928500 13729000 7226500 8564600 6879000 7509400 7004500 5154900 8171200 425230 7222400 5714600 13446000 7251500 8937000 7017900 7377600 6753100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1306200000 1306200000 0 10419 2905;2529 9686 55178 66828 66828 1 KLTGIKHELQANCYEEVK Unmodified 2159.1045 0.10448843 787 P23528 CFL1 Cofilin-1 yes yes 0 0 0 2 By MS/MS By MS/MS 6.5 1.96 1 2 4 3 7 3 47.991 48.282 3;4;5 5.9035E-47 13495 20211116_3436_TMUAki_TMT10x_P_F8 208.28 184.65 79432000 122570000 1092600 181470000 146990000 111670000 73386000 58682000 72416000 61905000 95141000 73964000 114590000 8127500 179930000 139130000 116880000 78257000 62434000 74519000 60327000 91076000 16 16 11 16 16 16 16 16 16 16 16 50963000 77258000 614880 113100000 132820000 98689000 61776000 39706000 46100000 39332000 60842000 47453000 72224000 5532700 112630000 125580000 100100000 65891000 43335000 48108000 38429000 58236000 10 10 6 10 10 10 10 10 10 10 10 28469000 45316000 477680 68377000 14174000 12982000 11610000 18976000 26316000 22572000 34300000 26511000 42371000 2594800 67298000 13554000 16777000 12366000 19099000 26412000 21897000 32840000 6 6 5 6 6 6 6 6 6 6 6 13892000000 11276000000 2615500000 10420 787 9687 55179;55180;55181;55182;55183;55184;55185;55186;55187;55188 66829;66830;66831;66832;66833;66834;66835;66836;66837;66838;66839;66840;66841;66842;66843;66844;66845 66839 17 KLTLDINER Unmodified 1100.619 0.61897272 2851 Q9HAU5 UPF2 Regulator of nonsense transcripts 2 yes yes 0 0 0 1 By MS/MS 6 0 1 1 43.026 43.191 3 0.045486 11061 20211116_3445_TMUAki_TMT10x_S_F6 49.448 19.263 623390 999110 13936 1129500 487050 477710 515450 825030 848950 671030 848820 580540 932770 62762 1133300 468560 534670 531680 816700 849070 661700 818830 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 623390 999110 13936 1129500 487050 477710 515450 825030 848950 671030 848820 580540 932770 62762 1133300 468560 534670 531680 816700 849070 661700 818830 1 1 1 1 1 1 1 1 1 1 1 24091000 0 24091000 10421 2851 9688 55189 66846 66846 1 KLTPITYPQGLAMAK Oxidation (M) 1646.9066 0.90656389 1390 P63000;P63000-2 RAC1 Ras-related C3 botulinum toxin substrate 1 yes no 0 0 1 1 By MS/MS By MS/MS 3.43 0.495 4 3 4 3 54.129 54.02 3;4 1.7251E-06 17733 20211116_3430_TMUAki_TMT10x_P_F3 103.21 84.381 30393000 48999000 275480 55411000 46863000 59429000 34959000 42101000 46033000 37980000 41757000 28301000 45745000 2708000 56136000 44648000 59906000 36426000 43556000 46194000 37263000 40414000 11 11 8 11 11 11 11 11 11 11 11 21128000 33315000 204380 37050000 39090000 51603000 28904000 27370000 31298000 25569000 27197000 19673000 31101000 2127000 37751000 37234000 51128000 29925000 28997000 31591000 25046000 26363000 7 7 5 7 7 7 7 7 7 7 7 9265600 15684000 71108 18361000 7772700 7826400 6055200 14731000 14734000 12411000 14559000 8627700 14645000 580990 18385000 7413900 8778000 6500600 14559000 14604000 12217000 14050000 4 4 3 4 4 4 4 4 4 4 4 6313000000 4613200000 1699800000 10422 1390 9689 55190;55191;55192;55193;55194;55195;55196 66847;66848;66849;66850;66851;66852;66853;66854;66855;66856;66857 66848 1867 11 KLTPITYPQGLAMAK Unmodified 1630.9116 0.91164927 1390 P63000;P63000-2 RAC1 Ras-related C3 botulinum toxin substrate 1 yes no 0 0 0 1 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 59.502 59.482 3;4 1.8825E-09 18720 20211116_3442_TMUAki_TMT10x_S_F4 125.28 112.72 72007000 120320000 296510 125660000 87974000 103050000 88545000 64249000 61874000 64402000 85958000 67045000 112290000 6135000 127480000 84365000 105500000 88960000 67287000 64968000 62892000 82175000 9 9 5 9 9 9 9 9 9 9 9 45244000 75107000 89901 82603000 60686000 81473000 57353000 41000000 39905000 39813000 54332000 42125000 70111000 3771700 83722000 58092000 82160000 57810000 43693000 41872000 38933000 51966000 4 4 2 4 4 4 4 4 4 4 4 26762000 45214000 206610 43060000 27288000 21578000 31192000 23249000 21969000 24589000 31625000 24919000 42181000 2363300 43759000 26272000 23345000 31150000 23594000 23096000 23959000 30209000 5 5 3 5 5 5 5 5 5 5 5 5892300000 3660700000 2231500000 10423 1390 9689 55197;55198;55199;55200;55201;55202 66858;66859;66860;66861;66862;66863;66864;66865;66866;66867 66865 10 KLTPQGQR Unmodified 926.52976 0.52976379 974 P39019 RPS19 40S ribosomal protein S19 yes yes 0 0 0 1 By MS/MS 2 0 1 1 27.391 27.154 3 0.043711 6453 20211116_3429_TMUAki_TMT10x_P_F2 53.089 39.417 318000 567680 6631 392250 435140 636670 909600 276750 353440 240960 368220 296140 529050 34185 416210 429560 625430 880620 298470 384420 236810 354750 1 1 1 1 1 1 1 1 1 1 1 318000 567680 6631 392250 435140 636670 909600 276750 353440 240960 368220 296140 529050 34185 416210 429560 625430 880620 298470 384420 236810 354750 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16436000 16436000 0 10424 974 9690 55203 66868 66868 1 KLTVKPIETK Unmodified 1155.7227 0.72270951 2761 Q9GZU8 FAM192A Protein FAM192A yes yes 0 0 0 2 By MS/MS 2 0 1 1 39.796 39.536 4 0.0082215 11308 20211116_3429_TMUAki_TMT10x_P_F2 67.019 50.077 3015700 4352900 90471 4414700 4362200 9422900 3519000 2549300 3095500 2592300 3664600 2808600 4062000 353200 4574200 4167000 9136100 3600500 2940200 3187800 2530000 3517500 2 2 2 2 2 2 2 2 2 2 2 3015700 4352900 90471 4414700 4362200 9422900 3519000 2549300 3095500 2592300 3664600 2808600 4062000 353200 4574200 4167000 9136100 3600500 2940200 3187800 2530000 3517500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 136290000 136290000 0 10425 2761 9691 55204 66869;66870 66870 2 KLVEALCAAGHR Unmodified 1323.7081 0.70813886 790 P23919;P23919-2 DTYMK Thymidylate kinase yes no 0 0 0 1 By MS/MS 3 0 1 1 42.233 41.918 3 0.00031808 13840 20211116_3441_TMUAki_TMT10x_S_F3 83.087 58.249 906230 1627000 17719 1847400 870930 850340 822720 1159000 1087900 1104500 1376100 843920 1519000 91152 1854200 834950 934710 845250 1161200 1105400 1080900 1318600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 906230 1627000 17719 1847400 870930 850340 822720 1159000 1087900 1104500 1376100 843920 1519000 91152 1854200 834950 934710 845250 1161200 1105400 1080900 1318600 1 1 1 1 1 1 1 1 1 1 1 25841000 0 25841000 10426 790 9692 55205 66871 66871 1 KLVESLPQEIK Unmodified 1282.7497 0.74965254 1189 P52815 MRPL12 39S ribosomal protein L12, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 7 0.707 1 2 1 1 3 51.855 52.159 3 4.9161E-12 16678 20211116_3446_TMUAki_TMT10x_S_F7 139.78 60.878 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10427 1189 9693 55206;55207;55208;55209 66872;66873;66874;66875 66874 4 KLVGFISAIPANIHIYDTEK Unmodified 2228.2205 0.22050447 872 P30419;P30419-2 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 yes no 0 0 0 1 By MS/MS 3 0 1 1 76.48 76.344 4 0.0025709 27789 20211116_3441_TMUAki_TMT10x_S_F3 58.479 48.949 2786500 5108000 137320 3593800 6783400 2988300 3671300 3473000 2211300 3244900 3777400 2595500 4760700 414970 3764200 6434300 3092500 3841500 3499800 2369000 3178500 3595400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2786500 5108000 137320 3593800 6783400 2988300 3671300 3473000 2211300 3244900 3777400 2595500 4760700 414970 3764200 6434300 3092500 3841500 3499800 2369000 3178500 3595400 1 1 1 1 1 1 1 1 1 1 1 379300000 0 379300000 10428 872 9694 55210 66876 66876 1 KLVGFISAIPANIHIYDTEKK Unmodified 2356.3155 0.31546749 872 P30419;P30419-2 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 yes no 0 0 0 2 By matching By MS/MS 4.67 0.471 1 2 2 1 70.317 70.371 5 2.9391E-14 21957 20211116_3444_TMUAki_TMT10x_S_F5 137.09 124.77 2197200 3747500 17064 3688000 2656300 2074500 2435000 2487700 1832000 2347200 2490100 2045900 3496600 204490 3742400 2542400 2222200 2462800 2504300 1913500 2298200 2381800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2197200 3747500 17064 3688000 2656300 2074500 2435000 2487700 1832000 2347200 2490100 2045900 3496600 204490 3742400 2542400 2222200 2462800 2504300 1913500 2298200 2381800 1 1 1 1 1 1 1 1 1 1 1 3040000000 2062100000 977940000 10429 872 9695 55211;55212;55213 66877 66877 1 KLVIIEGDLER Unmodified 1283.7449 0.74490152 526;527;525 P06753-2;P06753-3;P06753-5;P06753-4;P06753-7;P06753-6;P06753 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 1 By MS/MS By MS/MS 5.8 0.748 2 2 1 3 2 53.942 54.086 3 1.5588E-06 15500 20211116_3445_TMUAki_TMT10x_S_F6 125.61 88.918 27575000 43509000 273470 44051000 39509000 45439000 30637000 33004000 34133000 33040000 36596000 25677000 40601000 2639000 44922000 37672000 45925000 31649000 34185000 34659000 32267000 35227000 6 6 4 6 6 6 6 6 6 6 6 14296000 21756000 104580 22659000 26866000 30972000 16197000 16833000 17398000 16652000 18622000 13312000 20304000 1446100 23176000 25498000 30721000 17024000 17823000 17690000 16271000 17926000 3 3 2 3 3 3 3 3 3 3 3 13279000 21753000 168890 21392000 12643000 14468000 14441000 16170000 16735000 16388000 17975000 12365000 20297000 1193000 21745000 12174000 15204000 14625000 16361000 16968000 15996000 17301000 3 3 2 3 3 3 3 3 3 3 3 3179900000 1585200000 1594800000 10430 526;527;525 9696 55214;55215;55216;55217;55218 66878;66879;66880;66881;66882;66883;66884 66884 7 KLVIIEGDLERTEER Unmodified 1798.9789 0.97887721 526;527;525 P06753-2;P06753-3;P06753-5;P06753-4;P06753-7;P06753-6;P06753 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 2 By MS/MS By MS/MS 3.94 1.35 3 4 4 3 3 10 7 52.592 52.571 3;4 7.2133E-30 17176 20211116_3430_TMUAki_TMT10x_P_F3 211.78 84.603 63265000 105430000 829010 102890000 91952000 119060000 73332000 89040000 87119000 84520000 89281000 58910000 98369000 6135100 105390000 87732000 119620000 75785000 91910000 88102000 82733000 86059000 23 23 15 23 23 23 23 23 23 23 23 36515000 60447000 396930 59773000 66835000 90001000 47242000 50607000 50513000 47910000 50998000 34000000 56401000 3634000 61478000 63604000 88937000 49045000 53361000 51263000 46902000 49181000 13 13 8 13 13 13 13 13 13 13 13 26750000 44984000 432080 43121000 25117000 29057000 26090000 38434000 36606000 36610000 38283000 24909000 41968000 2501100 43912000 24128000 30679000 26739000 38549000 36840000 35831000 36878000 10 10 7 10 10 10 10 10 10 10 10 12255000000 7449100000 4805800000 10431 526;527;525 9697 55219;55220;55221;55222;55223;55224;55225;55226;55227;55228;55229;55230;55231;55232;55233;55234;55235 66885;66886;66887;66888;66889;66890;66891;66892;66893;66894;66895;66896;66897;66898;66899;66900;66901;66902;66903;66904;66905;66906;66907 66890 23 KLVILEGELER Unmodified 1297.7606 0.76055158 1413 P67936;P67936-2;P07951;P07951-2;CON__Q3SX28;P07951-3 TPM4;TPM2 Tropomyosin alpha-4 chain;Tropomyosin beta chain yes no 0 0 0 1 By MS/MS By MS/MS 5.25 0.829 1 1 2 1 3 57.756 57.799 3 1.994E-07 17032 20211116_3445_TMUAki_TMT10x_S_F6 107.65 73.381 + 5732000 9042700 34340 9043400 6544800 8157800 6151800 6318200 6275600 6535200 7507800 5337100 8437800 489560 9212400 6265800 8323900 6264400 6523200 6422700 6373600 7204400 2 2 1 2 2 2 2 2 2 2 2 2245200 3387000 34340 3541500 3432600 4717600 2606700 2666400 2675400 2602900 3125900 2090800 3161000 234780 3619600 3272700 4687300 2689400 2812600 2734800 2544700 3001500 1 1 1 1 1 1 1 1 1 1 1 3486900 5655700 0 5501800 3112200 3440200 3545100 3651800 3600200 3932200 4381900 3246400 5276800 254790 5592800 2993100 3636600 3575000 3710600 3687900 3828900 4202900 1 1 0 1 1 1 1 1 1 1 1 636650000 307420000 329230000 10432 1413 9698 55236;55237;55238;55239 66908;66909;66910 66910 3 KLVILEGELERAEER Unmodified 1782.984 0.98396259 1413 P67936;P67936-2 TPM4 Tropomyosin alpha-4 chain yes no 0 0 0 2 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 60.446 60.284 3;4 8.8854E-24 19075 20211116_3442_TMUAki_TMT10x_S_F4 189.81 169.68 + 10400000 17733000 95751 16606000 11478000 15821000 11811000 13348000 13936000 13702000 13674000 9684500 16542000 966600 17009000 11020000 16110000 12028000 13707000 14075000 13368000 13199000 4 4 4 4 4 4 4 4 4 4 4 3475500 5310800 27604 5199000 4603900 7683600 4526300 4403400 4756700 4331100 4366900 3236200 4955100 329670 5348800 4414200 7600600 4602400 4640500 4815200 4233000 4224600 1 1 1 1 1 1 1 1 1 1 1 6924900 12422000 68146 11407000 6874300 8136900 7284300 8944400 9179000 9370900 9307400 6448300 11587000 636920 11660000 6605900 8509200 7426000 9066000 9259700 9134600 8974500 3 3 3 3 3 3 3 3 3 3 3 2315000000 542650000 1772300000 10433 1413 9699 55240;55241;55242;55243;55244;55245 66911;66912;66913;66914;66915;66916 66916 6 KLVIPSELGYGER Unmodified 1459.8035 0.80347903 822 P26885 FKBP2 Peptidyl-prolyl cis-trans isomerase FKBP2 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 53.571 54.083 3 1.0157E-08 16918 20211116_3435_TMUAki_TMT10x_P_F7 118.52 92.475 2605200 5231500 0 4567600 3244500 2934000 2460500 5008500 4269200 4231200 4370900 2425600 4879100 214490 4682200 3090600 3136300 2592800 4964400 4267600 4164400 4213300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2605200 5231500 0 4567600 3244500 2934000 2460500 5008500 4269200 4231200 4370900 2425600 4879100 214490 4682200 3090600 3136300 2592800 4964400 4267600 4164400 4213300 1 1 0 1 1 1 1 1 1 1 1 423420000 0 423420000 10434 822 9700 55246;55247 66917;66918 66917 2 KLVIVGDGACGK Unmodified 1215.6645 0.66454271 1314;549 P08134;P61586 RHOC;RHOA Rho-related GTP-binding protein RhoC;Transforming protein RhoA no no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 44.51 44.573 3 2.6268E-06 11443 20211116_3447_TMUAki_TMT10x_S_F8 116.84 79.726 4449200 6453300 61614 8879300 7047500 5755000 4886800 2812300 2702600 2967400 5047000 4143100 6030700 455280 8840300 6706400 5989400 5002200 3012500 2928200 2891800 4796100 2 2 1 2 2 2 2 2 2 2 2 2427000 3545400 0 4781400 5619400 4186700 3358300 1440900 1523000 1586300 2785300 2259700 3312800 238520 4781600 5330800 4240100 3467800 1607900 1674500 1543200 2647800 1 1 0 1 1 1 1 1 1 1 1 2022300 2907900 61614 4097900 1428100 1568300 1528500 1371500 1179500 1381200 2261700 1883400 2717800 216760 4058700 1375600 1749300 1534400 1404600 1253600 1348500 2148300 1 1 1 1 1 1 1 1 1 1 1 346140000 111440000 234700000 10435 549;1314 9701 55248;55249 66919;66920 66920 2 KLVWIPSER Unmodified 1126.6499 0.64987892 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 51.261 51.02 3 0.0014034 16003 20211116_3429_TMUAki_TMT10x_P_F2 84.658 49.558 7890000 11924000 140850 15230000 14486000 12102000 10003000 6055500 5250400 5916000 9422600 7346900 11139000 821860 15257000 13782000 12386000 10234000 6457800 5697400 5783600 8960500 3 3 2 3 3 3 3 3 3 3 3 5218600 7683400 114420 9518700 12229000 10385000 7742100 4177100 3627400 3903100 6133900 4859400 7176300 581550 9594000 11616000 10386000 7960400 4552100 3959300 3823300 5839600 2 2 1 2 2 2 2 2 2 2 2 2671400 4241000 26434 5711200 2257400 1717100 2261300 1878400 1623000 2012800 3288700 2487500 3962800 240310 5662800 2166200 1999300 2273700 1905700 1738100 1960300 3121000 1 1 1 1 1 1 1 1 1 1 1 812580000 682150000 130430000 10436 935 9702 55250;55251;55252;55253 66921;66922;66923;66924 66921 4 KLVWVPSDK Unmodified 1070.6124 0.61243078 934 P35579 MYH9 Myosin-9 yes yes 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 51.929 51.802 3 0.0026273 14763 20211116_3428_TMUAki_TMT10x_P_F1 68.657 42.143 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10437 934 9703 55254;55255 66925;66926 66925 2 KLWGDRYFDPANGK Unmodified 1665.8263 0.82633974 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 2 By matching By MS/MS 3 2.92 2 1 1 1 3 51.127 50.998 4 0.045771 16565 20211116_3439_TMUAki_TMT10x_S_F1 44.457 26.441 17169000 27569000 89237 30779000 20158000 13993000 16586000 18645000 20761000 16928000 24991000 15986000 25737000 1425100 30922000 19236000 15395000 17140000 18671000 21088000 16604000 23977000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17169000 27569000 89237 30779000 20158000 13993000 16586000 18645000 20761000 16928000 24991000 15986000 25737000 1425100 30922000 19236000 15395000 17140000 18671000 21088000 16604000 23977000 2 2 1 2 2 2 2 2 2 2 2 1232900000 572220000 660670000 10438 653 9704 55256;55257;55258;55259 66927;66928 66927 2 KLYANMFER Oxidation (M) 1186.5805 0.58047873 1497 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 0 0 1 1 By MS/MS 8 0 1 1 36.148 36.442 3 0.039397 8682 20211116_3436_TMUAki_TMT10x_P_F8 44.425 28.534 184070 293960 10870 314160 623280 496950 241470 253120 311490 250770 278070 171470 274370 31543 321800 588690 489500 267070 269590 312640 245010 269280 1 1 1 1 1 1 1 1 1 1 1 184070 293960 10870 314160 623280 496950 241470 253120 311490 250770 278070 171470 274370 31543 321800 588690 489500 267070 269590 312640 245010 269280 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34223000 34223000 0 10439 1497 9705 55260 66929 66929 2029 1 KLYDIDVAK Unmodified 1063.5914 0.59136099 1364 P62750 RPL23A 60S ribosomal protein L23a yes yes 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 49.129 49.531 3 0.00021342 15094 20211116_3435_TMUAki_TMT10x_P_F7 125.74 89.407 25445000 38184000 61464 47142000 54135000 38568000 26243000 26975000 31684000 23325000 32762000 23692000 35663000 2531400 47332000 51207000 39559000 28246000 27902000 32034000 22931000 31571000 4 4 1 4 4 4 4 4 4 4 4 16527000 24473000 61464 30394000 46700000 31865000 18515000 17193000 19977000 14641000 20914000 15389000 22858000 1836200 30611000 44072000 32042000 20300000 18145000 20293000 14404000 20146000 3 3 1 3 3 3 3 3 3 3 3 8917400 13711000 0 16748000 7435200 6702500 7727700 9782300 11707000 8683700 11848000 8302800 12805000 695190 16721000 7135000 7516900 7946400 9757700 11741000 8526200 11425000 1 1 0 1 1 1 1 1 1 1 1 2105600000 1220300000 885390000 10440 1364 9706 55261;55262;55263 66930;66931;66932;66933 66932 4 KLYGDADYLEER Unmodified 1470.6991 0.69907354 709 P17812;P17812-2 CTPS1 CTP synthase 1 yes no 0 0 0 1 By MS/MS By MS/MS 3.71 1.03 1 2 2 2 4 3 46.383 46.383 3 2.8622E-07 12905 20211116_3431_TMUAki_TMT10x_P_F4 127.71 104.49 28405000 43661000 427780 56386000 54590000 57016000 35283000 58164000 59250000 45586000 48922000 26450000 40788000 3062700 56634000 51880000 58071000 37541000 58703000 58861000 45040000 47513000 11 11 8 11 11 11 11 11 11 11 11 14423000 21178000 177990 28774000 43046000 45626000 25468000 29193000 30167000 22759000 24410000 13430000 19789000 1716800 29070000 40840000 45072000 26898000 30318000 30280000 22493000 23726000 5 5 3 5 5 5 5 5 5 5 5 13982000 22484000 249790 27612000 11544000 11390000 9815500 28971000 29083000 22827000 24512000 13020000 20999000 1346000 27564000 11040000 12999000 10643000 28385000 28581000 22547000 23787000 6 6 5 6 6 6 6 6 6 6 6 2838300000 1846600000 991700000 10441 709 9707 55264;55265;55266;55267;55268;55269;55270 66934;66935;66936;66937;66938;66939;66940;66941;66942;66943;66944 66936 11 KMCLFAGFQR Unmodified 1256.6158 0.61581838 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 1 By MS/MS 6 0 1 1 54.76 54.849 3 0.030397 15805 20211116_3445_TMUAki_TMT10x_S_F6 57.785 36.278 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10442 1474 9708 55271 66945 66945 1 KMDQPPQAK Oxidation (M) 1057.5226 0.5226295 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 1 1 By MS/MS 5 0 1 1 28.689 28.619 3 0.022506 6145 20211116_3433_TMUAki_TMT10x_P_F5 53.751 36.315 203490 311930 0 329340 446470 338970 277970 120660 149990 129780 229430 189470 291130 20107 334900 423850 339820 286800 133970 161000 126370 218870 1 1 0 1 1 1 1 1 1 1 1 203490 311930 0 329340 446470 338970 277970 120660 149990 129780 229430 189470 291130 20107 334900 423850 339820 286800 133970 161000 126370 218870 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8557800 8557800 0 10443 916 9709 55272 66946 66946 1152 1 KMEEEILLLEDQNSK Oxidation (M) 1833.903 0.90299466 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 1 1 By MS/MS 3 0 1 1 56.208 55.993 3 0.001473 18508 20211116_3430_TMUAki_TMT10x_P_F3 66.387 54.241 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10444 935 9710 55273 66947 66947 1190 1 KMEIYRPHK Oxidation (M) 1216.6387 0.63866231 2362;1645 Q13547;Q92769;Q92769-3 HDAC1;HDAC2 Histone deacetylase 1;Histone deacetylase 2 no no 0 0 1 2 By MS/MS By MS/MS 1 0 2 1 1 29.513 29.553 5 0.03553 5829 20211116_3428_TMUAki_TMT10x_P_F1 54.982 39.542 319890 470740 1779.2 415700 373090 411970 315700 214340 244860 236880 315600 297860 439040 28914 427920 356400 415480 321040 228570 254710 230420 302260 2 2 1 2 2 2 2 2 2 2 2 194940 267830 0 224720 224310 285970 167910 115920 129850 129940 160250 181510 249750 16563 233210 213660 283730 172090 126860 134840 126330 153650 1 1 0 1 1 1 1 1 1 1 1 124950 202910 1779.2 190990 148790 126000 147780 98422 115020 106940 155350 116350 189290 12351 194710 142750 131750 148940 101720 119870 104090 148610 1 1 1 1 1 1 1 1 1 1 1 10720000 4737200 5982600 10445 1645;2362 9711 55274;55275 66948 66948 2212 1 KMGQAVPAPTGAPPGGQPDYSAAWAEYYR Oxidation (M) 3051.4185 0.41850536 2408;2407 Q96AE4-2;Q96AE4 FUBP1 Far upstream element-binding protein 1 no no 0 0 1 1 By MS/MS 8 0 1 1 59.105 59.097 4 4.8389E-06 17293 20211116_3447_TMUAki_TMT10x_S_F8 66.501 62.195 822340 1341500 0 1239300 1124300 927800 896160 1150500 1094500 993110 1191200 765680 1251400 0 1266900 1072300 969400 927080 1153800 1108300 976410 1146100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 822340 1341500 0 1239300 1124300 927800 896160 1150500 1094500 993110 1191200 765680 1251400 0 1266900 1072300 969400 927080 1153800 1108300 976410 1146100 1 1 0 1 1 1 1 1 1 1 1 556940000 0 556940000 10446 2408;2407 9712 55276 66949 66949 2735 1 KMGVPYCIIK Oxidation (M) 1223.6406 0.64063614 1358 P62424 RPL7A 60S ribosomal protein L7a yes yes 0 0 1 1 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 46.9 46.897 3 0.017062 14714 20211116_3430_TMUAki_TMT10x_P_F3 56.548 28.379 2569200 3966600 4022.7 4399600 7941100 6900300 3925500 3638100 3459700 2666800 3702500 2392200 3702900 291990 4495200 7513600 6802000 4177400 3834500 3548600 2644600 3564200 1 1 1 1 1 1 1 1 1 1 1 2569200 3966600 4022.7 4399600 7941100 6900300 3925500 3638100 3459700 2666800 3702500 2392200 3702900 291990 4495200 7513600 6802000 4177400 3834500 3548600 2644600 3564200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 127980000 127980000 0 10447 1358 9713 55277;55278;55279 66950;66951;66952 66951 1822 3 KMGVPYCIIK Unmodified 1207.6457 0.64572152 1358 P62424 RPL7A 60S ribosomal protein L7a yes yes 0 0 0 1 By MS/MS 4 0 1 1 53.091 53.138 3 4.2687E-05 16117 20211116_3442_TMUAki_TMT10x_S_F4 95.573 64.701 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10448 1358 9713 55280 66953 66953 1 KMIHEGPLVWK Oxidation (M) 1352.7275 0.72747731 3037 Q9NZN5;Q9NZN5-2 ARHGEF12 Rho guanine nucleotide exchange factor 12 yes no 0 0 1 1 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 46.7 46.943 4 0.043166 12463 20211116_3447_TMUAki_TMT10x_S_F8 44.765 9.106 2170000 3407300 20215 3661700 3325600 3080500 2524400 2907000 2711800 2508500 3059700 2020500 3180300 202730 3708900 3169100 3170200 2608300 2952500 2762900 2466300 2940800 2 2 1 2 2 2 2 2 2 2 2 1263300 1750700 0 1911300 2454900 2290700 1752500 1557200 1410400 1369200 1717300 1176100 1634200 109220 1944200 2335400 2293700 1803700 1614700 1460700 1345000 1647100 1 1 0 1 1 1 1 1 1 1 1 906720 1656600 20215 1750400 870740 789850 771930 1349800 1301400 1139200 1342400 844390 1546100 93509 1764700 833650 876480 804560 1337800 1302200 1121300 1293700 1 1 1 1 1 1 1 1 1 1 1 403950000 234680000 169260000 10449 3037 9714 55281;55282 66954 66954 3085 1 KMNVSPDVNYEELAR Oxidation (M) 1779.8461 0.84614848 711 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 1 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 43.279 43.413 3 9.3222E-07 10884 20211116_3444_TMUAki_TMT10x_S_F5 110.06 101.47 12431000 20186000 50155 24439000 27731000 30836000 16277000 25441000 28325000 18594000 20928000 11574000 18851000 1165100 24727000 26297000 30898000 17482000 25934000 28026000 18442000 20418000 7 7 4 7 7 7 7 7 7 7 7 8726400 13543000 24546 16512000 25281000 28270000 13991000 17069000 18865000 12595000 14154000 8124300 12648000 859210 16811000 23951000 27823000 14933000 17786000 18811000 12486000 13800000 4 4 2 4 4 4 4 4 4 4 4 3704400 6642200 25609 7926900 2450000 2565800 2285400 8372000 9460300 5998600 6773900 3449300 6202700 305880 7915900 2346100 3075000 2548900 8148000 9215000 5956300 6617700 3 3 2 3 3 3 3 3 3 3 3 1427900000 837300000 590550000 10450 711 9715 55283;55284;55285;55286 66955;66956;66957;66958;66959;66960;66961 66960 800 7 KMNVSPDVNYEELAR Unmodified 1763.8512 0.85123386 711 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 0 1 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 49.887 50.062 3 1.8684E-14 13845 20211116_3445_TMUAki_TMT10x_S_F6 153.72 124.96 14069000 24609000 168920 29469000 16247000 14393000 12673000 13370000 11842000 12362000 18010000 13101000 22981000 1330400 29495000 15497000 15570000 13016000 13615000 12303000 12115000 17183000 5 5 3 5 5 5 5 5 5 5 5 2721300 4599400 70808 6271100 6701100 6042400 4413700 2849600 2533100 2400800 3415600 2534300 4298000 347340 6276000 6372100 6098000 4538400 3045000 2690600 2363300 3267600 1 1 1 1 1 1 1 1 1 1 1 11348000 20010000 98108 23198000 9545600 8351000 8259600 10520000 9309200 9961300 14594000 10567000 18683000 983010 23219000 9124800 9472100 8477800 10570000 9612100 9751800 13915000 4 4 2 4 4 4 4 4 4 4 4 841170000 321290000 519880000 10451 711 9715 55287;55288;55289 66962;66963;66964;66965;66966 66965 5 KMPFTEK Unmodified 879.45242 0.45242467 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 39.285 39.631 3 0.010603 9913 20211116_3436_TMUAki_TMT10x_P_F8 89.355 25.79 8551500 13271000 77494 13490000 15303000 13419000 11038000 6419500 5451100 6191700 10314000 7962800 12384000 856780 13746000 14569000 13517000 11247000 6873300 5962600 6056500 9799500 5 5 3 5 5 5 5 5 5 5 5 6686400 10201000 40104 10338000 13217000 12046000 8844600 4924900 4455500 4970400 7962400 6225900 9518900 664210 10562000 12565000 12006000 9064200 5368100 4849200 4852500 7572500 4 4 2 4 4 4 4 4 4 4 4 1865100 3070000 37390 3152200 2085700 1373200 2193600 1494600 995640 1221200 2352100 1736900 2864900 192570 3183400 2004900 1511400 2182300 1505300 1113400 1204000 2227000 1 1 1 1 1 1 1 1 1 1 1 163350000 107110000 56238000 10452 647 9716 55290;55291;55292 66967;66968;66969;66970 66969 4 KMQQENMKPQEQLTLEPYER 2 Oxidation (M) 2551.2047 0.20467276 765 P22087 FBL rRNA 2'-O-methyltransferase fibrillarin yes yes 0 0 2 2 By MS/MS By MS/MS 5.5 0.5 2 2 3 1 39.062 39.1 4 1.6524E-06 9219 20211116_3444_TMUAki_TMT10x_S_F5 87.862 76.339 1900200 3242400 5726.4 3782700 4486800 5045100 2480000 3477700 4641900 3231100 3149700 1769200 3027500 179400 3839700 4250800 5026500 2687400 3607600 4574800 3165800 3084600 4 4 1 4 4 4 4 4 4 4 4 1306900 2214400 5726.4 2507100 4222500 4634400 2170800 2189300 2815600 1999700 2012900 1216800 2067400 135480 2568800 3996300 4535000 2329200 2343600 2807700 1960800 1966600 3 3 1 3 3 3 3 3 3 3 3 593310 1028000 0 1275500 264330 410740 309170 1288500 1826300 1231400 1136900 552420 960150 43915 1270800 254530 491500 358220 1264000 1767100 1205000 1118000 1 1 0 1 1 1 1 1 1 1 1 1076300000 832640000 243660000 10453 765 9717 55293;55294;55295;55296 66971;66972;66973;66974 66974 883;884 4 KMQQNIQELEEQLEEEESAR Oxidation (M) 2476.1388 0.13876127 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 1 1 By MS/MS By MS/MS 1 0 3 2 1 59.937 59.79 3 6.8016E-13 20137 20211116_3439_TMUAki_TMT10x_S_F1 127.1 123.71 8958600 15936000 42746 14177000 9852300 14883000 10206000 12405000 12777000 12720000 12836000 8341100 14864000 725460 14598000 9453800 15063000 10413000 12747000 12888000 12410000 12381000 5 5 2 5 5 5 5 5 5 5 5 3835600 6452800 14401 5763100 4108000 8881600 4777500 5156200 5568500 5459900 5409400 3571200 6018600 305170 5974700 3954700 8771900 4835500 5439600 5624700 5319900 5223100 2 2 1 2 2 2 2 2 2 2 2 5123000 9483500 28346 8414100 5744400 6001900 5428500 7248800 7208500 7260400 7426700 4769900 8845200 420300 8623200 5499200 6291100 5578000 7307500 7263300 7090400 7157500 3 3 1 3 3 3 3 3 3 3 3 1553900000 881230000 672660000 10454 934 9718 55297;55298;55299 66975;66976;66977;66978;66979;66980 66979 1176 6 KMQQNIQELEEQLEEEESAR Unmodified 2460.1438 0.14384664 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 1 By MS/MS 1 0 1 1 69.469 69.3 3 3.2791E-11 23906 20211116_3439_TMUAki_TMT10x_S_F1 117.37 101.43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10455 934 9718 55300 66981 66981 1 KMSFDIIDK Oxidation (M) 1111.5583 0.5583463 2151 Q8IX01;Q8IX01-4;Q8IX01-3 SUGP2 SURP and G-patch domain-containing protein 2 yes no 0 0 1 1 By MS/MS By MS/MS 2.67 2.05 3 2 3 1 5 4 61.158 60.966 2;3 0.010167 20575 20211116_3439_TMUAki_TMT10x_S_F1 60.563 20.854 79831000 113940000 89788 153760000 61728000 78328000 83885000 30290000 33190000 42073000 70988000 74324000 106470000 5561800 152920000 59692000 83369000 82361000 33574000 37325000 40605000 67309000 9 9 1 9 9 9 9 9 9 9 9 47487000 65862000 89788 88912000 46383000 57420000 54321000 18236000 19324000 24266000 40464000 44213000 61542000 3656900 88606000 44657000 59558000 53601000 20699000 21940000 23451000 38380000 5 5 1 5 5 5 5 5 5 5 5 32344000 48082000 0 64847000 15345000 20908000 29565000 12054000 13867000 17807000 30523000 30111000 44929000 1905000 64313000 15036000 23811000 28759000 12874000 15385000 17154000 28929000 4 4 0 4 4 4 4 4 4 4 4 17703000000 11002000000 6701500000 10456 2151 9719 55301;55302;55303;55304;55305;55306;55307;55308;55309 66982;66983;66984;66985;66986 66985 2612 5 KMTGTLETQFTCPFCNHEK Oxidation (M) 2344.0286 0.028622651 1270 P60002 ELOF1 Transcription elongation factor 1 homolog yes yes 0 0 1 1 By MS/MS 7 0 1 1 46.051 46.616 4 3.552E-06 14012 20211116_3435_TMUAki_TMT10x_P_F7 89.859 78.335 1426800 2226600 15891 2514700 2513200 3191800 1730300 1741700 1605000 1765500 1831300 1328600 2078700 148320 2555200 2391000 3177300 1792200 1844700 1646300 1723300 1759500 1 1 1 1 1 1 1 1 1 1 1 1426800 2226600 15891 2514700 2513200 3191800 1730300 1741700 1605000 1765500 1831300 1328600 2078700 148320 2555200 2391000 3177300 1792200 1844700 1646300 1723300 1759500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 339110000 339110000 0 10457 1270 9720 55310 66987 66987 1711 1 KMTGTLETQFTCPFCNHEK Unmodified 2328.0337 0.033708029 1270 P60002 ELOF1 Transcription elongation factor 1 homolog yes yes 0 0 0 1 By MS/MS 8 0 1 1 52.084 51.992 4 6.4929E-05 14469 20211116_3447_TMUAki_TMT10x_S_F8 76.704 62.689 1933100 3137800 0 3446100 2069300 1665000 1611800 2324000 2173100 1993400 2523700 1799800 2929100 140840 3467200 1971200 1820900 1676200 2319700 2198600 1960400 2423700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1933100 3137800 0 3446100 2069300 1665000 1611800 2324000 2173100 1993400 2523700 1799800 2929100 140840 3467200 1971200 1820900 1676200 2319700 2198600 1960400 2423700 1 1 0 1 1 1 1 1 1 1 1 169090000 0 169090000 10458 1270 9720 55311 66988 66988 1 KMVPDFYVDSIADLLPALQG Oxidation (M) 2207.1184 0.11840716 14 A6NDG6 PGP Phosphoglycolate phosphatase yes yes 0 0 1 1 By MS/MS 8 0 1 1 81.956 81.96 3 0.0018641 27227 20211116_3436_TMUAki_TMT10x_P_F8 59.512 49.045 356490 602080 1091.5 586750 363210 640970 405760 366070 384720 417890 544020 331930 561740 30667 600480 349400 643460 408700 387620 397960 406000 519860 1 1 1 1 1 1 1 1 1 1 1 356490 602080 1091.5 586750 363210 640970 405760 366070 384720 417890 544020 331930 561740 30667 600480 349400 643460 408700 387620 397960 406000 519860 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 47618000 47618000 0 10459 14 9721 55312 66989 66989 12 1 KNCPHIVVGTPGR Unmodified 1433.7562 0.75615168 1665 Q13838;Q13838-2 DDX39B Spliceosome RNA helicase DDX39B yes no 0 0 0 1 By MS/MS By MS/MS 1.6 0.8 3 1 1 3 2 31.017 30.909 3;4 8.2286E-06 6387 20211116_3428_TMUAki_TMT10x_P_F1 93.823 77.152 3277600 5253900 38669 4966900 5002700 4595900 3926800 2539000 2999300 2661900 4239500 3052000 4901400 324370 5081800 4771600 4658600 4010700 2689000 3135900 2594700 4051300 5 5 3 5 5 5 5 5 5 5 5 2701500 4358200 35386 4192700 4375100 4050800 3234600 2108600 2476500 2178100 3565800 2515600 4066100 278360 4286800 4168400 4091800 3317200 2244000 2591200 2124400 3406100 3 3 2 3 3 3 3 3 3 3 3 576190 895730 3283.6 774210 627600 545100 692220 430400 522840 483790 673730 536470 835360 46015 794980 603240 566870 693520 444990 544660 470300 645250 2 2 1 2 2 2 2 2 2 2 2 404230000 303620000 100610000 10460 1665 9722 55313;55314;55315;55316;55317 66990;66991;66992;66993;66994;66995 66991 6 KNCPHVVVGTPGR Unmodified 1419.7405 0.74050162 63 O00148;O00148-2;O00148-3 DDX39A ATP-dependent RNA helicase DDX39A yes no 0 0 0 1 By MS/MS By MS/MS 1.25 0.433 3 1 3 1 29.216 29.165 3;4 0.0001742 5726 20211116_3428_TMUAki_TMT10x_P_F1 83.204 66.572 676340 1002800 29834 1104300 838700 964450 723290 448080 529720 501100 703780 629970 936120 86152 1117300 803090 979540 733710 483220 553540 487210 673520 3 3 3 3 3 3 3 3 3 3 3 491860 716950 17529 778650 629780 797640 505660 328800 408140 371280 508420 458100 669220 59047 790270 601810 800880 516380 359230 423040 360860 487350 2 2 2 2 2 2 2 2 2 2 2 184490 285880 12305 325610 208920 166810 217630 119280 121580 129820 195350 171870 266900 27105 327000 201280 178660 217320 123990 130500 126360 186170 1 1 1 1 1 1 1 1 1 1 1 63789000 49942000 13846000 10461 63 9723 55318;55319;55320;55321 66996;66997;66998;66999 66997 4 KNDKEAAGEGPALYEDPPDQK Unmodified 2271.0655 0.065519968 829 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes yes 0 0 0 2 By MS/MS 5 0 1 1 39.64 39.764 4 0.00013524 9492 20211116_3444_TMUAki_TMT10x_S_F5 68.369 54.059 409200 720610 0 882980 451540 302260 292070 1215200 1457900 631710 926170 380920 673010 23466 880640 428230 364260 340690 1172000 1413200 641000 909900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 409200 720610 0 882980 451540 302260 292070 1215200 1457900 631710 926170 380920 673010 23466 880640 428230 364260 340690 1172000 1413200 641000 909900 1 1 0 1 1 1 1 1 1 1 1 52117000 0 52117000 10462 829 9724 55322 67000 67000 1 KNDPQSITADDLHQLLVVAR Unmodified 2232.1862 0.18624423 2663 Q9BTE3;Q9BTE3-2;Q9BTE3-3 MCMBP Mini-chromosome maintenance complex-binding protein yes no 0 0 0 1 By MS/MS By MS/MS 7 0.707 1 2 1 2 2 62.743 63.076 4 2.4647E-24 21142 20211116_3446_TMUAki_TMT10x_S_F7 161.47 157.86 39983000 72848000 1829400 64157000 44398000 50903000 49433000 42123000 33845000 46875000 52053000 37241000 67942000 5081600 65866000 42808000 52477000 49396000 43414000 35760000 45585000 49650000 5 5 5 5 5 5 5 5 5 5 5 2610500 4150800 102000 3707600 3164600 5846600 3826900 3282300 2916600 3065700 3215400 2431400 3871500 319250 3845600 3057100 5766600 3818900 3460100 3017600 3003000 3092500 1 1 1 1 1 1 1 1 1 1 1 37372000 68697000 1727400 60449000 41233000 45057000 45606000 38841000 30928000 43810000 48838000 34810000 64071000 4762300 62021000 39751000 46711000 45577000 39953000 32742000 42582000 46558000 4 4 4 4 4 4 4 4 4 4 4 3701600000 1436600000 2265100000 10463 2663 9725 55323;55324;55325;55326 67001;67002;67003;67004;67005 67003 5 KNFESLSEAFSVASAAAVLSHNR Unmodified 2434.2241 0.2240863 495 P04844;P04844-2 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 0 0 0 1 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 75.705 75.621 4 3.1313E-57 26500 20211116_3430_TMUAki_TMT10x_P_F3 232.82 210.98 25444000 43633000 679040 45045000 25955000 34670000 29096000 24950000 22688000 25868000 31201000 23693000 40720000 2197300 45699000 24984000 35741000 29151000 25885000 23664000 25226000 29835000 9 9 5 9 9 9 9 9 9 9 9 11728000 19192000 641350 18100000 10898000 20582000 14182000 11206000 10665000 12390000 14029000 10925000 17904000 1542300 18579000 10570000 20604000 14105000 11902000 11123000 12052000 13429000 5 5 4 5 5 5 5 5 5 5 5 13716000 24441000 37688 26945000 15057000 14088000 14914000 13744000 12023000 13477000 17172000 12768000 22816000 654940 27119000 14414000 15137000 15046000 13983000 12541000 13173000 16406000 4 4 1 4 4 4 4 4 4 4 4 10735000000 6035800000 4698700000 10464 495 9726 55327;55328;55329;55330;55331 67006;67007;67008;67009;67010;67011;67012;67013;67014 67007 9 KNFEWVAER Unmodified 1177.588 0.58800695 767 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 0 1 By MS/MS 7 0 1 1 44.32 44.825 3 0.0019664 13268 20211116_3435_TMUAki_TMT10x_P_F7 73.632 49.25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10465 767 9727 55332 67015 67015 1 KNFPFER Unmodified 936.48175 0.48175096 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 1 By MS/MS 8 0 1 1 39.16 39.415 3 0.025626 9826 20211116_3436_TMUAki_TMT10x_P_F8 71.692 34.991 708400 926180 0 1307800 2034900 1304800 819890 715460 833690 642230 909090 659580 865650 76114 1307200 1920500 1316200 895610 754980 850210 630260 874640 1 1 0 1 1 1 1 1 1 1 1 708400 926180 0 1307800 2034900 1304800 819890 715460 833690 642230 909090 659580 865650 76114 1307200 1920500 1316200 895610 754980 850210 630260 874640 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 60808000 60808000 0 10466 352 9728 55333 67016 67016 1 KNGGLGHMNIALLSDLTK Oxidation (M) 1897.0091 0.0091314834 862 P30048;P30048-2 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes no 0 0 1 1 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 54.229 54.081 4 8.4056E-09 16005 20211116_3440_TMUAki_TMT10x_S_F2 118.53 101.45 15460000 27147000 65838 23971000 23501000 34122000 20281000 36639000 34158000 29397000 27709000 14395000 25319000 971050 24830000 22455000 34192000 21170000 36909000 33914000 29009000 26930000 4 4 2 4 4 4 4 4 4 4 4 8491000 14648000 0 13121000 14009000 24710000 13439000 19394000 18607000 15041000 14355000 7905700 13662000 296550 13667000 13416000 24339000 13822000 19857000 18552000 14869000 13979000 2 2 0 2 2 2 2 2 2 2 2 6969400 12499000 65838 10849000 9492200 9411900 6841600 17245000 15551000 14356000 13355000 6489700 11657000 674500 11163000 9038900 9853000 7348000 17052000 15362000 14140000 12951000 2 2 2 2 2 2 2 2 2 2 2 3710300000 2699600000 1010700000 10467 862 9729 55334;55335;55336 67017;67018;67019;67020 67020 1029 4 KNGGLGHMNIALLSDLTK Unmodified 1881.0142 0.014216861 862 P30048;P30048-2 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes no 0 0 0 1 By matching By MS/MS 2.5 0.5 1 1 1 1 63.262 62.896 4 5.2457E-07 22445 20211116_3441_TMUAki_TMT10x_S_F3 101.15 74.12 4949000 8366600 111150 6450000 6506600 5465300 5328400 4963100 3910700 4604300 5982300 4608800 7799800 535710 6700700 6216000 5617200 5422600 5060700 4114000 4511600 5706800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4949000 8366600 111150 6450000 6506600 5465300 5328400 4963100 3910700 4604300 5982300 4608800 7799800 535710 6700700 6216000 5617200 5422600 5060700 4114000 4511600 5706800 1 1 1 1 1 1 1 1 1 1 1 1033300000 362620000 670660000 10468 862 9729 55337;55338 67021 67021 1 KNGQLAASVETAGDSELFLMK Oxidation (M) 2224.1045 0.10454801 1859 Q16658 FSCN1 Fascin yes yes 0 0 1 1 By MS/MS By MS/MS 6.14 0.639 1 4 2 2 5 62.168 62.271 3;4 2.1349E-26 18879 20211116_3445_TMUAki_TMT10x_S_F6 168.2 154.16 17804000 30944000 152660 27552000 19252000 26958000 19528000 24318000 25067000 24370000 24331000 16577000 28861000 1520500 28338000 18468000 27440000 19965000 24860000 25233000 23799000 23494000 6 6 3 6 6 6 6 6 6 6 6 5476300 9772100 109690 8637000 6773400 12770000 7099100 7960700 7688600 7763300 7726400 5099800 9114100 574420 8953100 6509500 12646000 7202200 8330700 7797300 7590200 7452200 2 2 2 2 2 2 2 2 2 2 2 12328000 21172000 42966 18915000 12479000 14188000 12429000 16358000 17378000 16606000 16604000 11478000 19747000 946080 19385000 11959000 14794000 12763000 16529000 17435000 16208000 16041000 4 4 1 4 4 4 4 4 4 4 4 3940800000 1389700000 2551000000 10469 1859 9730 55339;55340;55341;55342;55343;55344;55345 67022;67023;67024;67025;67026;67027;67028;67029 67026 2475 8 KNGQLAASVETAGDSELFLMK Unmodified 2208.1096 0.10963339 1859 Q16658 FSCN1 Fascin yes yes 0 0 0 1 By matching By MS/MS 6.33 0.471 2 1 1 2 68.284 68.36 3 4.0507E-19 23341 20211116_3446_TMUAki_TMT10x_S_F7 146.13 130.36 7643800 12874000 137230 12822000 8659400 6043800 8500100 3967100 2979000 4347900 7407600 7117800 12012000 734640 12983000 8304600 6528500 8459400 4149700 3429400 4230700 7008800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7643800 12874000 137230 12822000 8659400 6043800 8500100 3967100 2979000 4347900 7407600 7117800 12012000 734640 12983000 8304600 6528500 8459400 4149700 3429400 4230700 7008800 2 2 1 2 2 2 2 2 2 2 2 1072100000 163280000 908790000 10470 1859 9730 55346;55347;55348 67030;67031 67031 2 KNGVQAMVEFDSVQSAQR Oxidation (M) 2008.9636 0.96363785 677 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 1 1 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 39.841 39.943 3 3.5884E-12 9782 20211116_3444_TMUAki_TMT10x_S_F5 129.88 120.59 1301400 2349900 24232 2183500 1945500 2452900 1480500 2928200 3142100 2560200 2373500 1211900 2192100 137600 2243300 1855100 2492900 1577500 2942200 3096500 2515600 2313400 5 5 4 5 5 5 5 5 5 5 5 465210 794900 1200 745450 939520 1403300 623010 1027600 1108600 905470 799860 433170 741540 46331 773820 892970 1380600 663530 1060100 1095600 889360 781160 1 1 1 1 1 1 1 1 1 1 1 836200 1555000 23032 1438000 1006000 1049600 857510 1900700 2033400 1654700 1573700 778740 1450600 91272 1469500 962150 1112300 913970 1882100 2000900 1626200 1532300 4 4 3 4 4 4 4 4 4 4 4 250360000 142470000 107890000 10471 677 9731 55349;55350;55351 67032;67033;67034;67035;67036 67034 753 5 KNGVQAMVEFDSVQSAQR Unmodified 1992.9687 0.96872323 677 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 1 By MS/MS 7 0 1 1 49.941 50.425 3 2.3356E-07 16009 20211116_3446_TMUAki_TMT10x_S_F7 101.61 91.334 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10472 677 9731 55352 67037 67037 1 KNIILEEGK Unmodified 1042.6023 0.60226003 787 P23528 CFL1 Cofilin-1 yes yes 0 0 0 1 By MS/MS By MS/MS 6 0.632 1 3 1 1 4 42.296 42.513 3 1.189E-05 10786 20211116_3445_TMUAki_TMT10x_S_F6 115.18 50.878 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10473 787 9732 55353;55354;55355;55356;55357 67038;67039;67040;67041;67042 67041 5 KNIILEEGKEILVGDVGQTVDDPYATFVK Unmodified 3189.6809 0.68091086 787 P23528 CFL1 Cofilin-1 yes yes 0 0 0 2 By MS/MS By MS/MS 5.91 1.24 2 2 3 3 1 6 5 78.754 78.764 4;5 7.6342E-25 26449 20211116_3433_TMUAki_TMT10x_P_F5 144.49 134.77 42633000 72107000 588020 59059000 46341000 55006000 53179000 29812000 34910000 37547000 48859000 39699000 67235000 3968300 61111000 44631000 55720000 53019000 31814000 36810000 36352000 46701000 10 10 7 10 10 10 10 10 10 10 10 21007000 36148000 355340 28216000 18299000 31699000 22672000 13999000 16876000 17545000 23840000 19561000 33700000 1874900 29397000 17667000 31680000 22589000 15233000 17670000 16990000 22782000 4 4 2 4 4 4 4 4 4 4 4 21626000 35959000 232680 30843000 28042000 23307000 30507000 15813000 18034000 20002000 25019000 20137000 33535000 2093500 31714000 26964000 24040000 30430000 16581000 19140000 19363000 23918000 6 6 5 6 6 6 6 6 6 6 6 23666000000 11334000000 12333000000 10474 787 9733 55358;55359;55360;55361;55362;55363;55364;55365;55366;55367;55368 67043;67044;67045;67046;67047;67048;67049 67043 7 KNILLTIGSYK Unmodified 1248.7442 0.74417324 831 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 0 0 0 1 By MS/MS 6 0 1 1 62.578 62.557 3 1.7556E-07 18994 20211116_3445_TMUAki_TMT10x_S_F6 109.84 92.113 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10475 831 9734 55369 67050 67050 1 KNLQEEIDALESR Unmodified 1543.7842 0.78420015 2906 Q9NQP4 PFDN4 Prefoldin subunit 4 yes yes 0 0 0 1 By MS/MS 3 1 1 1 2 57.904 57.832 3 6.0141E-06 18088 20211116_3442_TMUAki_TMT10x_S_F4 102.39 88.727 3262700 5707300 0 5287600 3494400 3204000 3361100 3649100 3874400 3945000 4578000 3037600 5324000 246940 5392700 3345500 3402500 3432200 3696600 3944000 3840700 4394500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3262700 5707300 0 5287600 3494400 3204000 3361100 3649100 3874400 3945000 4578000 3037600 5324000 246940 5392700 3345500 3402500 3432200 3696600 3944000 3840700 4394500 1 1 0 1 1 1 1 1 1 1 1 435160000 0 435160000 10476 2906 9735 55370;55371 67051;67052 67052 2 KNLQYYDISAK Unmodified 1341.6929 0.69286595 1368 P62826 RAN GTP-binding nuclear protein Ran yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 46.395 46.347 3 1.8343E-08 12659 20211116_3436_TMUAki_TMT10x_P_F8 151.78 113.83 12018000 18160000 83085 26655000 39059000 22824000 15563000 19724000 26297000 15090000 22445000 11190000 16977000 1411900 26536000 36863000 23418000 17347000 20072000 26147000 14928000 21771000 5 5 3 5 5 5 5 5 5 5 5 6012100 8999800 55950 13099000 33367000 18628000 10751000 10174000 13624000 7492500 11365000 5598000 8413100 895170 13156000 31426000 18446000 12177000 10690000 13654000 7428000 11033000 2 2 1 2 2 2 2 2 2 2 2 6006000 9160400 27135 13557000 5691900 4195700 4812300 9550300 12674000 7597100 11080000 5592300 8564100 516750 13380000 5437100 4972100 5170700 9381400 12493000 7500200 10738000 3 3 2 3 3 3 3 3 3 3 3 1118200000 904630000 213580000 10477 1368 9736 55372;55373;55374;55375 67053;67054;67055;67056;67057 67054 5 KNMQITILTCR Oxidation (M) 1392.7217 0.72174001 432 O95456;O95456-2 PSMG1 Proteasome assembly chaperone 1 yes no 0 0 1 1 By matching By MS/MS 2.33 0.471 2 1 1 2 39.289 39.135 3 0.032342 12758 20211116_3441_TMUAki_TMT10x_S_F3 47.429 31.292 700090 1182900 15888 876260 859560 938870 588950 1468700 1416000 1052500 1069800 651970 1102600 75082 916520 818350 964500 637150 1454100 1392100 1045100 1042700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 700090 1182900 15888 876260 859560 938870 588950 1468700 1416000 1052500 1069800 651970 1102600 75082 916520 818350 964500 637150 1454100 1392100 1045100 1042700 1 1 1 1 1 1 1 1 1 1 1 100840000 43593000 57243000 10478 432 9737 55376;55377;55378 67058 67058 324 1 KNMQITILTCR Unmodified 1376.7268 0.72682539 432 O95456;O95456-2 PSMG1 Proteasome assembly chaperone 1 yes no 0 0 0 1 By MS/MS 5 0 1 1 47.353 47.526 3 0.036935 12524 20211116_3444_TMUAki_TMT10x_S_F5 53.448 31.817 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10479 432 9737 55379 67059 67059 1 KNPASLPLTQAALK Unmodified 1450.8508 0.85076357 1632 Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8 TCOF1 Treacle protein yes no 0 0 0 1 By MS/MS 3 0 1 1 50.692 50.592 3 1.1535E-05 16294 20211116_3430_TMUAki_TMT10x_P_F3 101.53 93.617 1208700 1624600 0 1787600 2843300 3529400 1761900 2427300 2202200 1713500 1923500 1125300 1516500 104870 1838200 2697900 3463300 1857300 2502200 2211200 1702900 1864200 1 1 0 1 1 1 1 1 1 1 1 1208700 1624600 0 1787600 2843300 3529400 1761900 2427300 2202200 1713500 1923500 1125300 1516500 104870 1838200 2697900 3463300 1857300 2502200 2211200 1702900 1864200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 123580000 123580000 0 10480 1632 9738 55380 67060 67060 1 KNPEVPVNFAEFSK Unmodified 1604.8199 0.81985738 182 O15347 HMGB3 High mobility group protein B3 yes yes 0 0 0 1 By MS/MS By MS/MS 7.14 0.833 2 2 3 3 4 58.32 58.573 3 1.1893E-19 17071 20211116_3447_TMUAki_TMT10x_S_F8 146.78 127.2 38128000 66348000 375820 69394000 56277000 78050000 43519000 57231000 50072000 53614000 56283000 35503000 61921000 3664400 70708000 53657000 78510000 45013000 59131000 50873000 52511000 54102000 9 9 6 9 9 9 9 9 9 9 9 24393000 42662000 327760 45373000 42450000 65076000 32614000 36811000 32621000 34467000 36345000 22715000 39819000 2560600 46391000 40474000 64445000 33597000 38784000 33319000 33759000 34945000 6 6 4 6 6 6 6 6 6 6 6 13735000 23686000 48063 24022000 13827000 12973000 10905000 20420000 17451000 19147000 19938000 12788000 22102000 1103800 24317000 13182000 14065000 11417000 20347000 17555000 18752000 19157000 3 3 2 3 3 3 3 3 3 3 3 8530200000 4940100000 3590100000 10481 182 9739 55381;55382;55383;55384;55385;55386;55387 67061;67062;67063;67064;67065;67066;67067;67068;67069;67070 67070 10 KNPEVPVNFAEFSKK Unmodified 1732.9148 0.91482039 182 O15347 HMGB3 High mobility group protein B3 yes yes 0 0 0 2 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 53.706 53.637 4 1.4564E-19 17602 20211116_3439_TMUAki_TMT10x_S_F1 174.95 162.47 30221000 52124000 483980 51271000 55105000 70949000 38481000 69034000 53789000 51769000 50895000 28142000 48634000 3273200 52660000 52446000 71021000 40376000 69769000 53949000 51272000 49186000 5 5 4 5 5 5 5 5 5 5 5 18773000 30166000 470190 30935000 44844000 60543000 31849000 42025000 33018000 31778000 31476000 17483000 28151000 2359800 31947000 42700000 59435000 33021000 43356000 33484000 31458000 30411000 3 3 3 3 3 3 3 3 3 3 3 11448000 21958000 13785 20336000 10261000 10405000 6631900 27010000 20771000 19991000 19419000 10659000 20483000 913470 20712000 9746000 11586000 7354500 26413000 20465000 19814000 18775000 2 2 1 2 2 2 2 2 2 2 2 5946200000 3758200000 2188000000 10482 182 9740 55388;55389;55390;55391 67071;67072;67073;67074;67075 67074 5 KNPGVGNGDDEAAELMQQVNVLK Oxidation (M) 2441.1857 0.18565188 1824 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 1 1 By MS/MS By MS/MS 4.88 0.781 3 3 2 4 4 58.639 58.722 3;4 1.2684E-28 18460 20211116_3442_TMUAki_TMT10x_S_F4 177.4 158.86 19668000 35728000 258570 31139000 23334000 33364000 21356000 36688000 36996000 32788000 30987000 18314000 33321000 1478300 32125000 22331000 33926000 22250000 37017000 36740000 32183000 30078000 10 10 4 10 10 10 10 10 10 10 10 5929300 10741000 127690 9238100 8798800 17219000 9165400 11740000 11894000 10140000 9271900 5521200 10017000 589540 9649900 8449700 16926000 9362200 12165000 11888000 9969500 9025500 4 4 3 4 4 4 4 4 4 4 4 13739000 24987000 130880 21901000 14535000 16145000 12191000 24948000 25102000 22647000 21716000 12793000 23304000 888780 22475000 13882000 17000000 12888000 24852000 24852000 22213000 21053000 6 6 1 6 6 6 6 6 6 6 6 6507800000 3548200000 2959700000 10483 1824 9741 55392;55393;55394;55395;55396;55397;55398;55399 67076;67077;67078;67079;67080;67081;67082;67083;67084;67085;67086 67080 2441 11 KNPGVGNGDDEAAELMQQVNVLK Unmodified 2425.1907 0.19073726 1824 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 1 By MS/MS By MS/MS 6 0 3 2 1 69.974 69.909 3;4 2.2835E-29 22028 20211116_3445_TMUAki_TMT10x_S_F6 179.58 158.27 10462000 18056000 14461 16748000 12942000 13119000 13131000 6668300 5110300 7216800 11790000 9741200 16843000 891430 17124000 12414000 13444000 13062000 7121900 5786800 7025700 11166000 4 4 2 4 4 4 4 4 4 4 4 4652900 8004300 14447 8179300 5488100 8103600 6908000 3650500 3136500 3840000 5690100 4332400 7469500 403540 8330700 5298400 8160000 6816100 3942000 3446500 3742500 5410000 2 2 1 2 2 2 2 2 2 2 2 5809200 10051000 13.837 8569000 7454100 5015700 6223500 3017800 1973800 3376800 6099400 5408800 9373400 487890 8793300 7115300 5284000 6245500 3179900 2340300 3283200 5756200 2 2 1 2 2 2 2 2 2 2 2 1524000000 658010000 865970000 10484 1824 9741 55400;55401;55402 67087;67088;67089;67090;67091 67091 5 KNPSIAVPIVLKR Unmodified 1433.9082 0.90821887 2558 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a yes yes 0 0 0 2 By MS/MS By matching 6 0 2 1 1 48.022 48.148 4 0.039913 12712 20211116_3434_TMUAki_TMT10x_P_F6 50.155 36.249 916140 1349500 24465 1472600 2082100 2380400 1386600 1360600 1364500 1252200 1448100 853200 1259700 115080 1507100 1980400 2346100 1442200 1431600 1392100 1227400 1394400 1 1 1 1 1 1 1 1 1 1 1 916140 1349500 24465 1472600 2082100 2380400 1386600 1360600 1364500 1252200 1448100 853200 1259700 115080 1507100 1980400 2346100 1442200 1431600 1392100 1227400 1394400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 228360000 177830000 50531000 10485 2558 9742 55403;55404 67092 67092 1 KNPSSPLYTTLGVITK Unmodified 1717.9614 0.96143623 434 O95478 NSA2 Ribosome biogenesis protein NSA2 homolog yes yes 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 61.125 61.121 3 1.4882E-10 18929 20211116_3431_TMUAki_TMT10x_P_F4 129.32 99.167 9962600 17446000 161850 17375000 12957000 17779000 11501000 11713000 11008000 12227000 12986000 9277300 16279000 1008000 17737000 12396000 17951000 11727000 12231000 11290000 11921000 12466000 4 4 3 4 4 4 4 4 4 4 4 5916000 10013000 146320 9893000 8103400 13663000 7656500 7165300 6581200 7154800 7499500 5509500 9343000 657480 10157000 7767600 13541000 7756400 7612800 6774900 6988200 7206100 2 2 2 2 2 2 2 2 2 2 2 4046600 7432800 15527 7482500 4853600 4115800 3844200 4547900 4426700 5072500 5486900 3767800 6935800 350510 7579500 4628700 4410300 3970200 4617900 4515500 4932400 5260100 2 2 1 2 2 2 2 2 2 2 2 1129200000 725140000 404030000 10486 434 9743 55405;55406 67093;67094;67095;67096 67093 4 KNSVVEASEAAYK Unmodified 1394.7042 0.70415892 1515 Q04917 YWHAH 14-3-3 protein eta yes yes 0 0 0 1 By MS/MS 6 0 1 1 40.169 40.186 3 1.6693E-14 9514 20211116_3434_TMUAki_TMT10x_P_F6 163.23 140 1251500 1675700 11342 2622600 4867300 2594600 1604600 1068300 1563900 945310 1743600 1165400 1567200 164970 2608100 4585600 2610600 1796900 1159500 1599100 928300 1676400 1 1 1 1 1 1 1 1 1 1 1 1251500 1675700 11342 2622600 4867300 2594600 1604600 1068300 1563900 945310 1743600 1165400 1567200 164970 2608100 4585600 2610600 1796900 1159500 1599100 928300 1676400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 228660000 228660000 0 10487 1515 9744 55407 67097 67097 1 KNTLNPYYNESFSFEVPFEQIQK Unmodified 2821.3599 0.35991107 759 P21579 SYT1 Synaptotagmin-1 yes yes 0 0 0 1 By MS/MS 8 0 1 1 77.26 77.267 4 0.0035651 25293 20211116_3436_TMUAki_TMT10x_P_F8 53.444 45.823 3236400 7176700 94923 5505500 3377800 7269400 4658100 3578100 3438500 4156900 5297800 3014100 6690400 358760 5760900 3276700 7213800 4620300 3841600 3617400 4036000 5053000 1 1 1 1 1 1 1 1 1 1 1 3236400 7176700 94923 5505500 3377800 7269400 4658100 3578100 3438500 4156900 5297800 3014100 6690400 358760 5760900 3276700 7213800 4620300 3841600 3617400 4036000 5053000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 923930000 923930000 0 10488 759 9745 55408 67098 67098 1 KNVGQFSGFPFEK Unmodified 1483.746 0.74596415 942 P35659;P35659-2 DEK Protein DEK yes no 0 0 0 1 By MS/MS By MS/MS 2.83 2.41 2 2 1 1 3 3 59.461 59.219 3 1.9306E-11 20906 20211116_3441_TMUAki_TMT10x_S_F3 141.46 119.63 50464000 86756000 585370 88905000 62817000 71213000 55017000 50893000 60311000 57301000 66101000 46989000 80961000 4643000 90281000 60054000 73182000 56378000 52962000 61330000 55699000 63586000 9 9 5 9 9 9 9 9 9 9 9 20651000 33310000 206480 35108000 31773000 44576000 28854000 20636000 24851000 22946000 26589000 19229000 31089000 1931000 35830000 30397000 44290000 29297000 22259000 25518000 22315000 25596000 4 4 2 4 4 4 4 4 4 4 4 29813000 53446000 378890 53797000 31043000 26637000 26162000 30257000 35460000 34355000 39512000 27761000 49872000 2712000 54451000 29658000 28892000 27081000 30703000 35812000 33384000 37990000 5 5 3 5 5 5 5 5 5 5 5 5493700000 2626700000 2867000000 10489 942 9746 55409;55410;55411;55412;55413;55414 67099;67100;67101;67102;67103;67104;67105;67106;67107;67108 67108 10 KNVLGHMQQGGAPSPFDR Oxidation (M) 1953.9479 0.94792821 1487 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 1 1 By MS/MS 1 0 1 1 35.981 35.947 4 0.00025675 10305 20211116_3439_TMUAki_TMT10x_S_F1 65.423 55.323 238470 391960 0 430330 197020 167140 174900 452110 445290 372280 430280 222040 365890 19145 432370 188350 192910 186940 442900 440640 366880 415540 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 238470 391960 0 430330 197020 167140 174900 452110 445290 372280 430280 222040 365890 19145 432370 188350 192910 186940 442900 440640 366880 415540 1 1 0 1 1 1 1 1 1 1 1 41509000 0 41509000 10490 1487 9747 55415 67109 67109 2017 1 KNWVVTGADDMQIR Unmodified 1631.809 0.80897511 936 P35606;P35606-2 COPB2 Coatomer subunit beta' yes no 0 0 0 1 By MS/MS 7 0 1 1 52.033 52.726 3 3.6089E-06 16411 20211116_3435_TMUAki_TMT10x_P_F7 107.34 67.422 2538100 3947400 0 4335300 4261800 5079400 4178700 2753500 2521800 2555500 3245200 2362800 3684800 185580 4406400 4081100 5076400 4191700 2911000 2663700 2504000 3108100 1 1 0 1 1 1 1 1 1 1 1 2538100 3947400 0 4335300 4261800 5079400 4178700 2753500 2521800 2555500 3245200 2362800 3684800 185580 4406400 4081100 5076400 4191700 2911000 2663700 2504000 3108100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 317970000 317970000 0 10491 936 9748 55416 67110 67110 1 KNWVVTGADDMQIR Oxidation (M) 1647.8039 0.80388973 936 P35606;P35606-2 COPB2 Coatomer subunit beta' yes no 0 0 1 1 By MS/MS 7 0 1 1 43.498 44.047 3 0.0083393 13411 20211116_3446_TMUAki_TMT10x_S_F7 56.872 43.444 1386700 2585300 24355 3044300 1471600 1058200 997350 2018500 2661900 2024700 2415100 1291300 2414100 128730 3043600 1399900 1222100 1088000 2004000 2626500 1977200 2337400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1386700 2585300 24355 3044300 1471600 1058200 997350 2018500 2661900 2024700 2415100 1291300 2414100 128730 3043600 1399900 1222100 1088000 2004000 2626500 1977200 2337400 2 2 1 2 2 2 2 2 2 2 2 49387000 0 49387000 10492 936 9748 55417 67111;67112 67112 1197 2 KPAAAAGAK Unmodified 783.46029 0.46028724 606 P10412 HIST1H1E Histone H1.4 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 28.498 28.545 3 0.00065901 5458 20211116_3428_TMUAki_TMT10x_P_F1 101.65 62.855 671060 1129000 0 756660 773810 1118500 744640 802610 654060 592340 807480 624780 1052100 50828 803630 740830 1110000 754040 825680 674800 587170 774200 3 3 0 3 3 3 3 3 3 3 3 299450 475380 0 322210 333550 662270 357310 357350 312580 262720 339610 278820 443010 25131 344610 320410 646850 359810 375880 320910 260490 326770 1 1 0 1 1 1 1 1 1 1 1 371610 653620 0 434450 440260 456230 387320 445260 341480 329620 467880 345960 609080 25697 459020 420420 463190 394230 449800 353890 326680 447430 2 2 0 2 2 2 2 2 2 2 2 30232000 17621000 12611000 10493 606 9749 55418;55419 67113;67114;67115 67113 3 KPAAAGVK Unmodified 740.45447 0.45447358 693 P16401 HIST1H1B Histone H1.5 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 30.114 30.18 3 0.0019352 6082 20211116_3428_TMUAki_TMT10x_P_F1 89.355 55.277 598280 1248700 8355.2 828160 745890 738680 650250 1039800 871570 741750 976230 557120 1163600 59456 873230 713290 764800 671430 1033100 880700 736710 938490 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 598280 1248700 8355.2 828160 745890 738680 650250 1039800 871570 741750 976230 557120 1163600 59456 873230 713290 764800 671430 1033100 880700 736710 938490 1 1 1 1 1 1 1 1 1 1 1 35606000 0 35606000 10494 693 9750 55420;55421 67116;67117 67116 2 KPAAATVTK Unmodified 885.52837 0.5283668 695 P16403 HIST1H1C Histone H1.2 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 3 1 2 31.423 31.455 3 1.0108E-05 8514 20211116_3439_TMUAki_TMT10x_S_F1 136.02 97.666 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10495 695 9751 55422;55423;55424 67118;67119;67120 67119 3 KPAAGLSAAPVPTAPAAGAPLMDFGNDFVPPAPR Oxidation (M) 3286.6809 0.68086806 2903 Q9NQC3;Q9NQC3-2;Q9NQC3-5 RTN4 Reticulon-4 yes no 0 0 1 1 By MS/MS By MS/MS 3.33 3.3 4 2 3 3 72.555 72.491 4;5 1.2159E-06 22825 20211116_3447_TMUAki_TMT10x_S_F8 68.543 62.942 11463000 20247000 305770 17395000 13851000 19646000 14685000 13701000 14180000 14875000 15178000 10675000 18882000 1253400 17981000 13319000 19741000 14836000 14266000 14483000 14480000 14610000 8 8 7 8 8 8 8 8 8 8 8 5454600 9419800 172660 7835700 5902000 12138000 6856100 6724200 6910400 7283500 7179100 5080100 8783800 619400 8170000 5693500 11979000 6906200 7126700 7037300 7090400 6917100 3 3 3 3 3 3 3 3 3 3 3 6008300 10827000 133110 9559000 7948600 7507300 7828900 6977100 7269500 7592000 7998500 5595200 10098000 634010 9810600 7625500 7762500 7930100 7139000 7445800 7389400 7693300 5 5 4 5 5 5 5 5 5 5 5 8104300000 4942000000 3162300000 10496 2903 9752 55425;55426;55427;55428;55429;55430 67121;67122;67123;67124;67125;67126;67127;67128 67128 3017 8 KPAAGLSAAPVPTAPAAGAPLMDFGNDFVPPAPR Unmodified 3270.686 0.68595344 2903 Q9NQC3;Q9NQC3-2;Q9NQC3-5 RTN4 Reticulon-4 yes no 0 0 0 1 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 77.137 77.098 4 0.094426 26622 20211116_3429_TMUAki_TMT10x_P_F2 24.355 11.034 3485900 6625600 95532 5489200 4134800 6200300 5013400 4417700 3791600 4229700 5115700 3246400 6178100 387120 5690800 3992500 6232600 5001500 4576000 3957700 4138700 4893900 2 2 2 2 2 2 2 2 2 2 2 1696000 3384900 51278 2545000 1620100 4041400 2613400 2505500 1939600 2273100 2587200 1579500 3155400 187340 2678000 1581500 3990300 2578100 2617900 2025700 2229600 2475700 1 1 1 1 1 1 1 1 1 1 1 1789900 3240700 44254 2944300 2514600 2158900 2400000 1912300 1852000 1956500 2528500 1666900 3022800 199790 3012800 2410900 2242300 2423500 1958000 1932000 1909000 2418200 1 1 1 1 1 1 1 1 1 1 1 4171000000 2136000000 2035000000 10497 2903 9752 55431;55432;55433 67129;67130 67129 2 KPADLQNLAPGTHPPFITFNSEVK Unmodified 2620.3649 0.36493687 3342 Q9Y696 CLIC4 Chloride intracellular channel protein 4 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 1 1 1 1 63.935 63.932 4 9.1944E-17 19693 20211116_3428_TMUAki_TMT10x_P_F1 129.29 116.49 13455000 22593000 113240 18282000 14782000 25274000 16333000 17124000 16271000 17690000 17724000 12529000 21066000 1210400 19060000 14217000 25133000 16484000 17839000 16607000 17254000 17053000 4 4 3 4 4 4 4 4 4 4 4 7863900 12508000 61800 9956000 8028000 17921000 9078700 9778100 9094700 10098000 9763600 7322500 11662000 711870 10456000 7727700 17582000 9154500 10362000 9275300 9849200 9397900 2 2 2 2 2 2 2 2 2 2 2 5591500 10085000 51443 8326400 6753700 7352800 7254100 7345800 7175900 7592000 7960600 5206400 9403800 498520 8604000 6489600 7550400 7329600 7476400 7331500 7404600 7655000 2 2 1 2 2 2 2 2 2 2 2 2724000000 2053800000 670200000 10498 3342 9753 55434;55435 67131;67132;67133;67134 67131 4 KPAEYGYVSLGR Unmodified 1338.6932 0.6932003 708 P17676;P17676-2 CEBPB CCAAT/enhancer-binding protein beta yes no 0 0 0 1 By MS/MS 8 0 1 1 42.2 42.395 3 0.0077081 11031 20211116_3436_TMUAki_TMT10x_P_F8 61.657 42.846 1147400 1882100 13614 1613100 3376400 3638100 1859800 2364700 2724600 2124500 2046200 1068400 1755200 139030 1694900 3200200 3552800 1992600 2461400 2709900 2084800 1994900 1 1 1 1 1 1 1 1 1 1 1 1147400 1882100 13614 1613100 3376400 3638100 1859800 2364700 2724600 2124500 2046200 1068400 1755200 139030 1694900 3200200 3552800 1992600 2461400 2709900 2084800 1994900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 43598000 43598000 0 10499 708 9754 55436 67135 67135 1 KPAGATPK Unmodified 768.44939 0.4493882 693 P16401 HIST1H1B Histone H1.5 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 28.365 28.412 3 0.0046601 5468 20211116_3428_TMUAki_TMT10x_P_F1 87.149 52.428 525800 883950 9812.1 756820 517190 724370 593950 310290 340250 325540 594090 489620 824350 49632 780580 498240 730640 590610 336840 366250 317310 565240 3 3 2 3 3 3 3 3 3 3 3 399790 631620 6091.4 546700 380250 591110 424260 228990 239890 237510 424970 372290 589050 38549 564380 366080 591300 422340 251350 258680 231620 404220 1 1 1 1 1 1 1 1 1 1 1 126010 252340 3720.7 210120 136940 133270 169690 81306 100360 88025 169120 117330 235300 11083 216190 132160 139340 168270 85490 107570 85693 161020 2 2 1 2 2 2 2 2 2 2 2 17012000 9491000 7521300 10500 693 9755 55437;55438 67136 67136 1 KPALGFYDTSEENYQALDADFRK Unmodified 2677.266 0.26601069 2574 Q99459 CDC5L Cell division cycle 5-like protein yes yes 0 0 0 2 By MS/MS By MS/MS 6.17 1.34 1 1 1 2 1 3 3 64.318 64.545 4 2.5034E-77 21748 20211116_3446_TMUAki_TMT10x_S_F7 267.55 246.8 65529000 112850000 354640 104090000 80981000 96791000 77441000 76608000 76254000 76126000 81714000 61013000 105270000 4500600 106700000 77550000 98601000 78700000 78893000 77821000 74369000 78657000 9 9 5 9 9 9 9 9 9 9 9 25280000 43601000 29660 38679000 28656000 53316000 30081000 29469000 29086000 28411000 28348000 23537000 40666000 956620 40025000 27501000 52876000 30407000 31134000 29607000 27791000 27369000 4 4 1 4 4 4 4 4 4 4 4 40249000 69252000 324980 65414000 52325000 43475000 47360000 47138000 47168000 47716000 53365000 37476000 64605000 3543900 66676000 50049000 45725000 48293000 47759000 48214000 46578000 51288000 5 5 4 5 5 5 5 5 5 5 5 9920100000 4205000000 5715100000 10501 2574 9756 55439;55440;55441;55442;55443;55444 67137;67138;67139;67140;67141;67142;67143;67144;67145 67144 9 KPALVAK Unmodified 725.47996 0.47996005 792;856;855 P29692;P29692-3;P29692-4;P29692-2;P24534 EEF1D;EEF1B2 Elongation factor 1-delta;Elongation factor 1-beta no no 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 35.478 35.354 3 0.0048467 9646 20211116_3429_TMUAki_TMT10x_P_F2 91.626 19.488 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10502 855;856;792 9757 55445;55446;55447;55448 67146;67147;67148;67149 67147 4 KPANDITSQLEINFGDLGR Unmodified 2087.0647 0.064732107 2232 Q8NC51;Q8NC51-3;Q8NC51-2;Q8NC51-4 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 70.544 70.786 3 1.3488E-31 24410 20211116_3446_TMUAki_TMT10x_S_F7 191.07 169.24 6828200 12322000 12747 10552000 8112600 8001500 9727300 5695800 6067400 6156500 8950800 6357600 11491000 567660 10851000 7818300 8256900 9669100 5921300 6435000 5993800 8545200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6828200 12322000 12747 10552000 8112600 8001500 9727300 5695800 6067400 6156500 8950800 6357600 11491000 567660 10851000 7818300 8256900 9669100 5921300 6435000 5993800 8545200 2 2 1 2 2 2 2 2 2 2 2 905370000 0 905370000 10503 2232 9758 55449;55450 67150;67151;67152 67151 3 KPAPPPAPPQATK Unmodified 1298.7347 0.73467118 2115 Q86VM9 ZC3H18 Zinc finger CCCH domain-containing protein 18 yes yes 0 0 0 1 By MS/MS 1 0 1 1 34.391 34.391 3 0.00015432 7722 20211116_3428_TMUAki_TMT10x_P_F1 83.692 67.801 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10504 2115 9759 55451 67153 67153 1 KPASFMTSICDER Unmodified 1540.7014 0.7013985 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 46.607 46.881 3 3.8415E-09 14578 20211116_3446_TMUAki_TMT10x_S_F7 128.71 116.56 9818600 15928000 151580 21002000 12538000 11555000 9681600 8573900 7403200 8631500 12401000 9143200 14881000 993390 20926000 11960000 12287000 9899300 8869600 7808500 8427600 11808000 4 4 4 4 4 4 4 4 4 4 4 3872600 6352900 46947 8027900 8615800 7788700 5936300 3562400 3165400 3493000 4958600 3606100 5934200 431250 8067900 8196700 7854300 6075800 3833200 3405100 3414300 4727900 2 2 2 2 2 2 2 2 2 2 2 5946000 9574600 104640 12974000 3922400 3766300 3745300 5011500 4237800 5138400 7442500 5537100 8946800 562140 12858000 3762900 4432800 3823500 5036300 4403400 5013200 7080300 2 2 2 2 2 2 2 2 2 2 2 1357300000 695200000 662110000 10505 1200 9760 55452;55453;55454;55455 67154;67155;67156;67157 67156 4 KPASFMTSICDER Oxidation (M) 1556.6963 0.69631312 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 1 1 By MS/MS 7 0 1 1 37.373 38.054 3 0.010447 10983 20211116_3446_TMUAki_TMT10x_S_F7 60.861 51.331 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10506 1200 9760 55456 67158 67158 1604 1 KPATSYVR Unmodified 920.50797 0.50796571 1053 P46779;P46779-2;P46779-3 RPL28 60S ribosomal protein L28 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 29.657 29.69 3 0.010288 5885 20211116_3428_TMUAki_TMT10x_P_F1 74.165 45.015 492930 1029000 1044.4 712470 848170 989800 584230 706450 743910 554390 792020 458950 958990 44956 753340 806570 984870 611350 728020 751520 547720 762550 2 2 1 2 2 2 2 2 2 2 2 238080 477920 1044.4 326240 513390 740750 341970 340090 347960 257980 367430 221680 445390 24568 349730 488020 720060 356020 363540 354420 255340 353840 1 1 1 1 1 1 1 1 1 1 1 254850 551090 0 386230 334770 249050 242260 366370 395950 296410 424590 237270 513610 20388 403610 318550 264810 255330 364480 397110 292370 408700 1 1 0 1 1 1 1 1 1 1 1 15146000 8814600 6331700 10507 1053 9761 55457;55458 67159;67160 67159 2 KPEDWDEEMDGEWEPPVIQNPEYK Oxidation (M) 2975.2807 0.28073406 832 P27797 CALR Calreticulin yes yes 0 0 1 1 By MS/MS 3 0 1 1 67.866 67.576 4 0.0020722 23289 20211116_3430_TMUAki_TMT10x_P_F3 57.432 46.015 1574500 2667800 1205.6 2596100 2038100 2936400 2242100 1535400 1449700 1630600 1986400 1466100 2489100 138160 2658600 1959400 2938900 2239100 1634700 1528500 1588700 1899600 1 1 1 1 1 1 1 1 1 1 1 1574500 2667800 1205.6 2596100 2038100 2936400 2242100 1535400 1449700 1630600 1986400 1466100 2489100 138160 2658600 1959400 2938900 2239100 1634700 1528500 1588700 1899600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 623180000 623180000 0 10508 832 9762 55459 67161 67161 1002 1 KPELVISYLPPGMASK Oxidation (M) 1744.9433 0.94334333 1428 P78347;P78347-2;P78347-4;P78347-3 GTF2I General transcription factor II-I yes no 0 0 1 1 By MS/MS 2 0 1 1 60.472 60.202 3 0.011328 19760 20211116_3429_TMUAki_TMT10x_P_F2 50.831 31.507 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10509 1428 9763 55460 67162 67162 1920 1 KPELVISYLPPGMASK Unmodified 1728.9484 0.94842871 1428 P78347;P78347-2;P78347-4;P78347-3 GTF2I General transcription factor II-I yes no 0 0 0 1 By MS/MS By MS/MS 3 0 2 1 1 68.957 68.587 3 3.0242E-05 24686 20211116_3441_TMUAki_TMT10x_S_F3 92.211 73.136 45741000 72456000 0 99642000 44147000 46446000 42379000 31114000 34426000 32964000 52538000 42583000 67711000 2888800 98936000 42228000 50253000 42833000 32463000 36013000 32119000 50121000 4 4 0 4 4 4 4 4 4 4 4 20178000 30131000 0 42400000 27995000 30789000 21055000 13793000 14526000 14922000 21964000 18786000 28161000 1518500 42214000 26651000 31700000 21518000 14915000 15327000 14527000 20958000 2 2 0 2 2 2 2 2 2 2 2 25563000 42326000 0 57243000 16152000 15658000 21324000 17321000 19900000 18042000 30574000 23797000 39550000 1370300 56721000 15577000 18553000 21315000 17548000 20686000 17591000 29163000 2 2 0 2 2 2 2 2 2 2 2 1407100000 569160000 837950000 10510 1428 9763 55461;55462 67163;67164;67165;67166 67166 4 KPESFFTQFDAVCLTCCSR Unmodified 2352.0337 0.033708029 3076 Q9UBE0;Q9UBE0-3;Q9UBE0-2 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed yes no 0 0 0 1 By MS/MS 2 0 1 1 71.381 71.243 3 2.416E-22 22944 20211116_3440_TMUAki_TMT10x_S_F2 150.98 146.09 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10511 3076 9764 55463 67167 67167 1 KPFGAILNLVPLAESVVK Unmodified 1894.1292 0.12917026 485 P04183 TK1 Thymidine kinase, cytosolic yes yes 0 0 0 1 By MS/MS 5 0 1 1 80.354 80.364 3 0.00026243 25962 20211116_3444_TMUAki_TMT10x_S_F5 69.188 50.592 2771500 4512400 3729.5 4400900 2672100 2280700 3114100 1557300 1211300 1646400 2758000 2580500 4210100 231860 4465800 2573500 2437900 3076700 1622500 1370500 1604300 2612700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2771500 4512400 3729.5 4400900 2672100 2280700 3114100 1557300 1211300 1646400 2758000 2580500 4210100 231860 4465800 2573500 2437900 3076700 1622500 1370500 1604300 2612700 1 1 1 1 1 1 1 1 1 1 1 863290000 0 863290000 10512 485 9765 55464 67168 67168 1 KPFPDFVYK Unmodified 1139.6015 0.60153174 1852 Q16555;Q16555-2 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 2.8 2.64 2 2 1 3 2 58.184 57.988 3 0.0010353 17572 20211116_3440_TMUAki_TMT10x_S_F2 93.058 66.544 90013000 147590000 329140 176360000 126290000 121060000 89505000 113290000 127320000 104680000 124560000 83811000 137820000 8043300 177050000 120180000 126570000 93883000 115320000 127780000 102590000 120240000 9 9 4 9 9 9 9 9 9 9 9 36213000 58255000 0 70870000 80271000 77379000 47188000 40808000 47306000 39904000 46462000 33716000 54406000 3420000 71506000 76123000 77605000 49598000 43310000 48090000 39010000 44846000 3 3 0 3 3 3 3 3 3 3 3 53800000 89330000 329140 105480000 46024000 43683000 42317000 72482000 80019000 64772000 78097000 50095000 83415000 4623300 105550000 44054000 48960000 44285000 72011000 79687000 63578000 75397000 6 6 4 6 6 6 6 6 6 6 6 5768200000 3615500000 2152700000 10513 1852 9766 55465;55466;55467;55468;55469 67169;67170;67171;67172;67173;67174;67175;67176;67177;67178 67178 10 KPFPDFVYKR Unmodified 1295.7026 0.70264277 1852 Q16555;Q16555-2 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 2 By MS/MS By MS/MS 3.75 0.968 1 2 3 2 5 3 48.968 48.966 3;4 2.016E-06 13850 20211116_3431_TMUAki_TMT10x_P_F4 150.46 110.54 56237000 90505000 419080 110950000 90387000 75265000 43571000 93859000 85112000 72427000 81864000 52365000 84527000 5402700 111210000 85507000 79294000 47930000 93849000 84653000 71619000 79072000 8 8 2 8 8 8 8 8 8 8 8 18367000 28553000 13041 33822000 53487000 49392000 21744000 29780000 27411000 22753000 26369000 17101000 26663000 1956800 34365000 50484000 48916000 23891000 31058000 27601000 22511000 25469000 4 4 1 4 4 4 4 4 4 4 4 37870000 61951000 406040 77129000 36900000 25873000 21827000 64079000 57700000 49675000 55495000 35263000 57864000 3445900 76846000 35023000 30378000 24038000 62791000 57052000 49108000 53603000 4 4 1 4 4 4 4 4 4 4 4 7199200000 4150500000 3048800000 10514 1852 9767 55470;55471;55472;55473;55474;55475;55476;55477 67179;67180;67181;67182;67183;67184;67185;67186;67187 67180 9 KPFPLVKPLPGEEPLFTIPHTQEAFR Unmodified 2987.6273 0.62729957 3135 Q9UIG0;Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B yes no 0 0 0 2 By MS/MS By MS/MS 2.62 0.857 1 2 4 1 4 4 75.466 75.252 4;5 3.2986E-23 25669 20211116_3441_TMUAki_TMT10x_S_F3 146.5 140.14 80642000 134410000 1314700 114220000 86701000 150200000 102840000 106480000 94763000 102570000 103670000 75093000 125340000 7644800 118480000 83596000 149810000 103220000 110350000 97075000 100340000 99730000 18 18 11 18 18 18 18 18 18 18 18 57054000 94132000 1123300 78608000 55632000 122660000 74855000 78211000 68264000 74536000 72612000 53130000 87777000 5515700 81948000 53878000 121240000 74719000 81653000 69889000 72947000 69912000 11 11 8 11 11 11 11 11 11 11 11 23588000 40275000 191400 35609000 31069000 27540000 27989000 28270000 26500000 28036000 31057000 21963000 37563000 2129100 36536000 29718000 28570000 28505000 28699000 27186000 27391000 29818000 7 7 3 7 7 7 7 7 7 7 7 24993000000 11741000000 13253000000 10515 3135 9768 55478;55479;55480;55481;55482;55483;55484;55485 67188;67189;67190;67191;67192;67193;67194;67195;67196;67197;67198;67199;67200;67201;67202;67203;67204;67205 67200 18 KPFTPVK Unmodified 815.49052 0.49052473 3231 Q9Y285;Q9Y285-2 FARSA Phenylalanine--tRNA ligase alpha subunit yes no 0 0 0 1 By MS/MS 3 0 1 1 37.919 37.661 3 0.052348 12072 20211116_3441_TMUAki_TMT10x_S_F3 52.482 28.958 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10516 3231 9769 55486 67206 67206 1 KPGAGDTAFPGTGGFSATFDYQQAFGNSTGGFDGQAR Unmodified 3684.6506 0.6505668 2534 Q96PK6 RBM14 RNA-binding protein 14 yes yes 0 0 0 1 By MS/MS 8 0 1 1 74.832 74.854 4 0.00039242 24285 20211116_3436_TMUAki_TMT10x_P_F8 56.313 54.186 1141900 1570700 0 1490200 925560 1960600 1173200 1425400 1399200 1357500 1324100 1063200 1465300 83371 1533000 893160 1956200 1184000 1474200 1410900 1328600 1279600 1 1 0 1 1 1 1 1 1 1 1 1141900 1570700 0 1490200 925560 1960600 1173200 1425400 1399200 1357500 1324100 1063200 1465300 83371 1533000 893160 1956200 1184000 1474200 1410900 1328600 1279600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1167200000 1167200000 0 10517 2534 9770 55487 67207 67207 1 KPGGFDISLFYR Unmodified 1398.7296 0.7295858 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 1 By MS/MS By MS/MS 3.25 0.829 2 2 4 4 4 66.588 66.407 2;3 6.2154E-09 20992 20211116_3431_TMUAki_TMT10x_P_F4 146.43 126.29 109640000 189190000 708820 177260000 143550000 170180000 137640000 132270000 120890000 127510000 132660000 102090000 176490000 9817900 181570000 137510000 172950000 139410000 136250000 124130000 124730000 127610000 8 8 4 8 8 8 8 8 8 8 8 53879000 87260000 67929 80743000 65541000 113630000 69812000 62924000 56665000 60006000 61541000 50164000 81399000 4286100 83323000 62929000 112590000 70183000 66449000 58396000 58725000 59215000 5 5 1 5 5 5 5 5 5 5 5 55759000 101930000 640890 96513000 78013000 56552000 67830000 69343000 64222000 67503000 71118000 51922000 95091000 5531800 98244000 74586000 60363000 69223000 69803000 65738000 66003000 68392000 3 3 3 3 3 3 3 3 3 3 3 30728000000 16727000000 14001000000 10518 647 9771 55488;55489;55490;55491;55492;55493;55494;55495 67208;67209;67210;67211;67212;67213;67214;67215;67216 67211 9 KPGIFPK Unmodified 785.47996 0.47996005 1893 Q4G0J3;Q4G0J3-3 LARP7 La-related protein 7 yes no 0 0 0 1 By MS/MS By MS/MS 3 0 2 1 1 41.084 40.953 3 0.045331 12115 20211116_3430_TMUAki_TMT10x_P_F3 55.383 9.6652 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10519 1893 9772 55496;55497 67217;67218 67217 2 KPGINVASDWSIHLR Unmodified 1691.9107 0.91073807 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 1 By MS/MS By MS/MS 3 0 2 1 1 53.936 53.658 4 2.2048E-19 17518 20211116_3430_TMUAki_TMT10x_P_F3 165.33 149.44 2900900 4280500 20763 5186300 3641300 4018800 2996200 2108900 2126600 2284400 3061900 2701100 3997500 260750 5209500 3475900 4123200 3045900 2245900 2234700 2223800 2924700 2 2 1 2 2 2 2 2 2 2 2 1452400 1960000 0 2537500 2133300 2869600 1735200 1011700 1050100 1144200 1551900 1352200 1831000 120470 2552900 2034900 2861200 1759700 1126400 1116100 1112000 1481500 1 1 0 1 1 1 1 1 1 1 1 1448500 2320500 20763 2648800 1508000 1149100 1261000 1097200 1076500 1140100 1510000 1348900 2166500 140280 2656600 1441000 1262000 1286300 1119500 1118600 1111700 1443200 1 1 1 1 1 1 1 1 1 1 1 921880000 582460000 339420000 10520 1730 9773 55498;55499 67219;67220 67219 2 KPGLEEAVESACAMR Oxidation (M) 1662.7705 0.7705407 2942 Q9NSE4 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 0 0 1 1 By MS/MS 5.5 0.5 1 1 2 44.667 44.761 3 0.021083 11342 20211116_3434_TMUAki_TMT10x_P_F6 43.261 30.9 1144600 1803000 0 1983300 2221600 2632200 1582400 1907600 1755300 1486200 1617500 1065600 1683000 98487 2020300 2113300 2625200 1643800 1963500 1773200 1468900 1564600 1 1 0 1 1 1 1 1 1 1 1 1144600 1803000 0 1983300 2221600 2632200 1582400 1907600 1755300 1486200 1617500 1065600 1683000 98487 2020300 2113300 2625200 1643800 1963500 1773200 1468900 1564600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 331350000 331350000 0 10521 2942 9774 55500;55501 67221 67221 3034 1 KPGMFFNPEESELDLTYGNR Oxidation (M) 2359.0791 0.079061542 626 P11413;P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 1 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 63.045 63.196 3 4.0205E-13 18832 20211116_3434_TMUAki_TMT10x_P_F6 132.79 125.8 11424000 19866000 0 17129000 14480000 18483000 14701000 16162000 16706000 16546000 15946000 10637000 18527000 956420 17688000 13888000 18693000 14963000 16561000 16881000 16144000 15406000 5 5 0 5 5 5 5 5 5 5 5 4466600 7427000 0 6436500 4698200 9176200 5308200 6378300 6784500 6388200 5880000 4158700 6926500 349790 6677300 4518600 9116200 5398100 6626500 6805400 6238600 5700200 2 2 0 2 2 2 2 2 2 2 2 6957600 12439000 0 10692000 9782100 9306400 9393300 9783700 9921300 10157000 10066000 6478200 11601000 606630 11011000 9369100 9577000 9564700 9934500 10075000 9904900 9705900 3 3 0 3 3 3 3 3 3 3 3 2349400000 888880000 1460500000 10522 626 9775 55502;55503;55504;55505 67222;67223;67224;67225;67226;67227 67222 648 6 KPGMFFNPEESELDLTYGNR Unmodified 2343.0841 0.08414692 626 P11413;P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 1 By MS/MS By MS/MS 6.8 0.748 2 2 1 2 3 68.463 68.586 3 1.2303E-12 22932 20211116_3435_TMUAki_TMT10x_P_F7 124.25 115.86 17736000 30136000 0 28845000 21278000 22231000 21230000 15557000 14055000 17458000 21083000 16511000 28115000 1120700 29419000 20375000 22905000 21315000 16211000 14862000 16972000 20120000 4 4 0 4 4 4 4 4 4 4 4 5676000 9817500 0 9446500 6010200 10405000 7196000 5474500 5283200 5748700 6923100 5284500 9159400 419440 9677500 5789000 10430000 7178000 5823100 5516700 5603100 6627700 2 2 0 2 2 2 2 2 2 2 2 12060000 20318000 0 19398000 15268000 11826000 14034000 10083000 8771400 11709000 14159000 11226000 18956000 701300 19741000 14586000 12475000 14137000 10388000 9344900 11369000 13492000 2 2 0 2 2 2 2 2 2 2 2 2214800000 924330000 1290500000 10523 626 9775 55506;55507;55508;55509;55510 67228;67229;67230;67231 67228 4 KPGPALK Unmodified 709.44866 0.44865992 136 O14813 PHOX2A Paired mesoderm homeobox protein 2A yes yes 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 32.743 32.679 3 0.013209 9005 20211116_3439_TMUAki_TMT10x_S_F1 72.138 39.668 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10524 136 9776 55511;55512;55513 67232;67233;67234 67234 3 KPGTNLTEEDLVDIVDTR Unmodified 2014.0219 0.021864239 1892 Q49AR2;Q49AR2-2 C5orf22 UPF0489 protein C5orf22 yes no 0 0 0 1 By MS/MS 4 0 1 1 65.185 65.019 3 9.2048E-05 21025 20211116_3442_TMUAki_TMT10x_S_F4 78.418 69.383 4832000 8713900 114360 8665000 5714800 6341500 6246100 5918500 6360300 6817800 7397000 4499900 8130800 519550 8808400 5499900 6594100 6311400 6065800 6502300 6621600 7103600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4832000 8713900 114360 8665000 5714800 6341500 6246100 5918500 6360300 6817800 7397000 4499900 8130800 519550 8808400 5499900 6594100 6311400 6065800 6502300 6621600 7103600 1 1 1 1 1 1 1 1 1 1 1 415940000 0 415940000 10525 1892 9777 55514 67235 67235 1 KPGYHAPVALLNDIPQSTEQYDPFAEHRPPK Unmodified 3514.7634 0.76335213 345 O75533;O75533-2 SF3B1 Splicing factor 3B subunit 1 yes no 0 0 0 2 By MS/MS By MS/MS 5.23 3.21 4 1 2 6 7 6 59.328 59.398 5;6;7 1.2545E-20 17860 20211116_3436_TMUAki_TMT10x_P_F8 134.04 128.56 103280000 163170000 2923800 171470000 128700000 164940000 125400000 124850000 110430000 125470000 129250000 96187000 152290000 11359000 174240000 123480000 167530000 126910000 128980000 113670000 122520000 124100000 21 21 16 21 21 21 21 21 21 21 21 56099000 87832000 1257300 92237000 72402000 115630000 75193000 65817000 60417000 65504000 68117000 52243000 81973000 6030800 94135000 69568000 115240000 75668000 69423000 62384000 63987000 65472000 12 12 11 12 12 12 12 12 12 12 12 47185000 75342000 1666500 79232000 56297000 49307000 50210000 59035000 50016000 59968000 61134000 43944000 70317000 5327900 80107000 53911000 52295000 51242000 59560000 51285000 58530000 58629000 9 9 5 9 9 9 9 9 9 9 9 25332000000 17011000000 8320200000 10526 345 9778 55515;55516;55517;55518;55519;55520;55521;55522;55523;55524;55525;55526;55527 67236;67237;67238;67239;67240;67241;67242;67243;67244;67245;67246;67247;67248;67249;67250;67251;67252;67253;67254;67255;67256 67246 21 KPHIIIATPGR Unmodified 1201.7295 0.72952623 2779 Q9H0S4;Q9H0S4-2 DDX47 Probable ATP-dependent RNA helicase DDX47 yes no 0 0 0 1 By MS/MS 4 0 1 1 35.039 35.064 3 5.1681E-05 8400 20211116_3431_TMUAki_TMT10x_P_F4 93.011 69.16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10527 2779 9779 55528 67257 67257 1 KPHIYYGSLEEK Unmodified 1462.7456 0.7456298 200 O43172;O43172-2 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes no 0 0 0 1 By MS/MS 7 0 1 1 39.746 40.187 4 0.0005493 11455 20211116_3435_TMUAki_TMT10x_P_F7 80.469 64.578 1429800 2370500 120560 2373000 2774600 3352200 2073300 1740200 1900000 1657500 2019000 1332200 2211900 249740 2435300 2650100 3318300 2134300 1848200 1944700 1622300 1944000 1 1 1 1 1 1 1 1 1 1 1 1429800 2370500 120560 2373000 2774600 3352200 2073300 1740200 1900000 1657500 2019000 1332200 2211900 249740 2435300 2650100 3318300 2134300 1848200 1944700 1622300 1944000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 51128000 51128000 0 10528 200 9780 55529 67258 67258 1 KPHTESLELQVR Unmodified 1435.7783 0.77832691 2652 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 1 By MS/MS By matching 5.25 0.433 3 1 2 2 33.773 33.835 3;4 2.6132E-09 8284 20211116_3433_TMUAki_TMT10x_P_F5 152.4 135.71 1461400 2176300 41709 2430800 2505300 2813200 1440900 1369100 1479000 1279300 1708600 1361000 2031700 174650 2467500 2377900 2809900 1518400 1462200 1511200 1253200 1641100 2 2 2 2 2 2 2 2 2 2 2 1461400 2176300 41709 2430800 2505300 2813200 1440900 1369100 1479000 1279300 1708600 1361000 2031700 174650 2467500 2377900 2809900 1518400 1462200 1511200 1253200 1641100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 231570000 227670000 3901100 10529 2652 9781 55530;55531;55532;55533 67259;67260 67259 2 KPHTLLQR Unmodified 991.5927 0.59269839 1128 P49915;P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 0 1 By matching By MS/MS 2.5 0.5 1 1 1 1 29.816 29.569 4 0.098391 8884 20211116_3441_TMUAki_TMT10x_S_F3 31.952 24.802 112260 205380 5426.9 182500 154200 94810 138630 419220 177970 144740 140340 104570 191550 14952 186480 147790 109280 142650 401640 178000 152670 136540 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 112260 205380 5426.9 182500 154200 94810 138630 419220 177970 144740 140340 104570 191550 14952 186480 147790 109280 142650 401640 178000 152670 136540 1 1 1 1 1 1 1 1 1 1 1 7320900 3472600 3848400 10530 1128 9782 55534;55535 67261 67261 1 KPHVVIATPGR Unmodified 1173.6982 0.6982261 3355 Q9Y6V7;Q9Y6V7-2 DDX49 Probable ATP-dependent RNA helicase DDX49 yes no 0 0 0 1 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 32.347 32.191 4 3.8273E-05 9873 20211116_3441_TMUAki_TMT10x_S_F3 100.55 72.541 548830 873750 0 826400 712950 716060 658380 423360 490380 464440 658600 510960 815130 41477 844750 681820 729710 665480 446440 512200 451910 630120 2 2 0 2 2 2 2 2 2 2 2 261920 440930 0 423900 417170 469510 334400 199290 248470 236210 323760 243860 411370 21196 434330 397750 469420 340870 217370 259210 229180 309990 1 1 0 1 1 1 1 1 1 1 1 286910 432820 0 402500 295770 246560 323980 224070 241910 228230 334840 267110 403760 20281 410420 284080 260290 324610 229070 252990 222730 320130 1 1 0 1 1 1 1 1 1 1 1 90515000 39714000 50801000 10531 3355 9783 55536;55537;55538 67262;67263 67263 2 KPIDYTILDDIGHGVK Unmodified 1782.9516 0.95159983 3017 Q9NYB9;Q9NYB9-2;Q9NYB9-3;Q9NYB9-4 ABI2 Abl interactor 2 yes no 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 63.397 63.736 4 4.1424E-05 20867 20211116_3435_TMUAki_TMT10x_P_F7 83.418 68.163 5136900 9256100 91000 8130600 7055100 11776000 7249900 6765500 5917900 6743500 7266400 4783600 8632700 537560 8428600 6775100 11660000 7302400 7131000 6126600 6587000 6967900 1 1 1 1 1 1 1 1 1 1 1 5136900 9256100 91000 8130600 7055100 11776000 7249900 6765500 5917900 6743500 7266400 4783600 8632700 537560 8428600 6775100 11660000 7302400 7131000 6126600 6587000 6967900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1546500000 1546500000 0 10532 3017 9784 55539;55540 67264 67264 1 KPLFFGEGTVLR Unmodified 1362.766 0.76597131 1126 P49902;P49902-2 NT5C2 Cytosolic purine 5'-nucleotidase yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 59.321 58.984 3 4.0625E-06 19735 20211116_3430_TMUAki_TMT10x_P_F3 113.76 91.764 11216000 17490000 14307 17584000 12948000 18510000 12293000 13265000 12974000 13257000 14081000 10443000 16321000 920030 17945000 12396000 18682000 12525000 13751000 13209000 12948000 13549000 3 3 2 3 3 3 3 3 3 3 3 7338700 11126000 10114 11051000 8801000 14556000 8551800 8423300 8365700 8555200 9538300 6832800 10381000 590920 11332000 8430100 14475000 8681700 8877700 8560400 8350000 9165000 2 2 1 2 2 2 2 2 2 2 2 3876800 6364700 4192.6 6532400 4146900 3953900 3741200 4841500 4608600 4702100 4542900 3609700 5939600 329110 6613700 3966300 4207000 3842900 4873500 4648100 4598000 4384400 1 1 1 1 1 1 1 1 1 1 1 787680000 527840000 259830000 10533 1126 9785 55541;55542;55543;55544 67265;67266;67267;67268;67269 67267 5 KPLFHGDSEIDQLFR Unmodified 1800.9159 0.91588303 517 P06493;P06493-2 CDK1 Cyclin-dependent kinase 1 yes no 0 0 0 1 By MS/MS By MS/MS 6.57 1.24 1 2 3 4 4 7 7 58.928 59.168 3;4 6.1551E-30 18914 20211116_3435_TMUAki_TMT10x_P_F7 203.04 167.69 101810000 174980000 700030 170780000 121990000 171480000 111900000 124520000 121000000 123580000 133620000 94799000 163260000 8679800 174530000 116730000 173590000 114320000 128940000 123140000 120730000 128510000 25 25 15 25 25 25 25 25 25 25 25 53232000 89855000 290140 87359000 71523000 119540000 65152000 64510000 61634000 64304000 66954000 49564000 83835000 4691400 89778000 68421000 118560000 66311000 68360000 63045000 62811000 64424000 12 12 7 12 12 12 12 12 12 12 12 48580000 85129000 409900 83426000 50463000 51936000 46750000 60007000 59363000 59272000 66670000 45235000 79428000 3988400 84757000 48305000 55032000 48005000 60582000 60099000 57918000 64088000 13 13 8 13 13 13 13 13 13 13 13 24836000000 12203000000 12633000000 10534 517 9786 55545;55546;55547;55548;55549;55550;55551;55552;55553;55554;55555;55556;55557;55558 67270;67271;67272;67273;67274;67275;67276;67277;67278;67279;67280;67281;67282;67283;67284;67285;67286;67287;67288;67289;67290;67291;67292;67293;67294 67275 25 KPLLESGTLGTK Unmodified 1242.7184 0.71835242 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 1 By MS/MS By MS/MS 6.4 2.73 1 1 3 3 2 46.167 46.307 3 9.8488E-16 12622 20211116_3436_TMUAki_TMT10x_P_F8 164.65 125.31 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10535 769 9787 55559;55560;55561;55562;55563 67295;67296;67297;67298;67299 67297 5 KPLLPYTPGSDVAGVIEAVGDNASAFK Unmodified 2715.4119 0.41194665 1547 Q08257;Q08257-3 CRYZ Quinone oxidoreductase yes no 0 0 0 1 By MS/MS 1 0 1 1 79.125 79.125 4 9.7199E-06 25954 20211116_3428_TMUAki_TMT10x_P_F1 66.925 59.303 3122900 5092200 131000 4861500 2938000 5961900 4104600 3538700 3245500 4063000 4079700 2908700 4750700 378410 4992200 2854300 5951300 4075800 3735900 3369000 3946600 3909700 1 1 1 1 1 1 1 1 1 1 1 3122900 5092200 131000 4861500 2938000 5961900 4104600 3538700 3245500 4063000 4079700 2908700 4750700 378410 4992200 2854300 5951300 4075800 3735900 3369000 3946600 3909700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 876400000 876400000 0 10536 1547 9788 55564 67300 67300 1 KPLPDHVSIVEPK Unmodified 1457.8242 0.82421447 783 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 42.983 43.081 4 0.00074523 11313 20211116_3436_TMUAki_TMT10x_P_F8 77.527 60.159 5623500 9670700 141800 8656700 6445900 7357400 6074400 10980000 9094600 7967800 9213100 5237100 9020000 609900 8883500 6179900 7656800 6274500 10890000 9124300 7905900 8883900 3 3 3 3 3 3 3 3 3 3 3 736140 1454200 3448.2 1240200 2274700 2551800 1321800 1368300 1358800 1311300 1454400 685440 1356100 85794 1300000 2157400 2492100 1391700 1449200 1384100 1283100 1400100 1 1 1 1 1 1 1 1 1 1 1 4887400 8216500 138350 7416500 4171200 4805600 4752600 9611400 7735800 6656500 7758700 4551700 7663900 524110 7583500 4022500 5164700 4882700 9441200 7740100 6622800 7483800 2 2 2 2 2 2 2 2 2 2 2 162980000 110370000 52617000 10537 783 9789 55565;55566 67301;67302;67303 67301 3 KPLPDHVSIVEPKDEILPTTPISEQK Unmodified 2909.575 0.57498923 783 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 2 By MS/MS By MS/MS 7.25 0.829 1 1 2 2 2 58.163 58.392 5 2.2121E-12 17499 20211116_3436_TMUAki_TMT10x_P_F8 116.47 109.9 25199000 41211000 223260 42697000 29274000 47112000 27185000 28948000 27658000 29969000 31095000 23463000 38459000 2133400 43519000 28016000 47314000 27699000 30380000 28238000 29227000 29890000 5 5 3 5 5 5 5 5 5 5 5 16619000 26405000 209400 28313000 21415000 40291000 20608000 19532000 18574000 19409000 18945000 15474000 24646000 1532300 28928000 20519000 39840000 20883000 20903000 18998000 18961000 18264000 3 3 2 3 3 3 3 3 3 3 3 8580200 14805000 13864 14385000 7858600 6821300 6577500 9416200 9084000 10560000 12151000 7988300 13814000 601130 14591000 7496500 7473900 6816400 9477000 9240500 10266000 11626000 2 2 1 2 2 2 2 2 2 2 2 6670700000 4071600000 2599100000 10538 783 9790 55567;55568;55569;55570 67304;67305;67306;67307;67308 67306 5 KPLTPYFR Unmodified 1020.5757 0.57565135 705 P17480;P17480-2 UBTF Nucleolar transcription factor 1 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 42.839 42.844 3 0.029373 11489 20211116_3431_TMUAki_TMT10x_P_F4 58.433 28.267 6580000 10973000 55080 12809000 13488000 12123000 8509800 7095300 7997300 7369500 9160500 6126700 10246000 648830 12927000 12808000 12280000 8876300 7476000 8199600 7186100 8800800 3 3 2 3 3 3 3 3 3 3 3 4447300 7069500 17495 7891000 11162000 10438000 6503100 4384300 5062600 4571100 5797800 4140600 6599600 434270 8030200 10584000 10340000 6795400 4768700 5239500 4456700 5570100 2 2 1 2 2 2 2 2 2 2 2 2132700 3903200 37585 4918100 2325900 1685400 2006700 2711000 2934700 2798300 3362700 1986100 3645900 214550 4897200 2224400 1939400 2080900 2707300 2960100 2729400 3230600 1 1 1 1 1 1 1 1 1 1 1 767690000 573120000 194570000 10539 705 9791 55571;55572;55573;55574 67309;67310 67309 2 KPLTSNCTIQIATPGK Unmodified 1727.924 0.92400487 1767 Q15061 WDR43 WD repeat-containing protein 43 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0 2 1 1 47.973 47.625 3 1.6873E-10 16172 20211116_3441_TMUAki_TMT10x_S_F3 127.75 115.39 656520 1045800 0 1273000 565630 507030 463470 970620 952920 873150 992580 611220 976670 45135 1271200 539270 574190 490610 960540 949420 856780 956280 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 656520 1045800 0 1273000 565630 507030 463470 970620 952920 873150 992580 611220 976670 45135 1271200 539270 574190 490610 960540 949420 856780 956280 1 1 0 1 1 1 1 1 1 1 1 116440000 0 116440000 10540 1767 9792 55575;55576 67311;67312 67312 2 KPLTSSSAAPQRPISTQR Unmodified 1924.049 0.049022463 1824 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 2 By MS/MS By MS/MS 3.67 1.33 1 1 1 3 3 6 3 28.97 28.927 3;4 1.0719E-57 6848 20211116_3433_TMUAki_TMT10x_P_F5 248.91 233.68 11382000 18261000 96632 19040000 19027000 15288000 13298000 13343000 15805000 12155000 16060000 10598000 17043000 1054600 19313000 18100000 15762000 13866000 13629000 15978000 11920000 15484000 12 12 6 12 12 12 12 12 12 12 12 4379900 7100500 47819 7152200 11647000 8920500 5481000 4858400 5910600 4385200 5818200 4078300 6625700 482700 7319200 11014000 8887300 5895300 5130500 5991000 4302300 5615500 8 8 5 8 8 8 8 8 8 8 8 7002600 11161000 48813 11888000 7379200 6367100 7817200 8484900 9894200 7769300 10241000 6520000 10417000 571910 11994000 7085600 6874500 7970700 8498500 9987100 7617400 9868800 4 4 1 4 4 4 4 4 4 4 4 2001800000 1381100000 620660000 10541 1824 9793 55577;55578;55579;55580;55581;55582;55583;55584;55585 67313;67314;67315;67316;67317;67318;67319;67320;67321;67322;67323;67324 67319 12 KPLTTTPR Unmodified 912.53927 0.53926584 1724 Q14684;Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 29.558 29.455 3 0.0069127 7330 20211116_3429_TMUAki_TMT10x_P_F2 80.231 55.456 1170600 1970300 677.39 1706200 1460100 1678600 1230900 872430 1019200 963480 1318700 1089900 1837500 93048 1758800 1393700 1693700 1254000 930440 1056800 937240 1262800 3 3 1 3 3 3 3 3 3 3 3 860150 1419100 677.39 1237400 1072100 1423600 914020 624730 772190 719500 974710 800850 1323500 69526 1278000 1023700 1420900 931000 678340 798970 698800 934000 2 2 1 2 2 2 2 2 2 2 2 310430 551170 0 468730 388070 255010 316870 247700 247030 243980 343990 289020 513990 23522 480810 370100 272800 322980 252110 257810 238440 328840 1 1 0 1 1 1 1 1 1 1 1 36075000 25080000 10995000 10542 1724 9794 55586;55587;55588;55589 67325;67326;67327 67326 3 KPLVLCGDLNVAHEEIDLR Unmodified 2190.1467 0.1466876 829 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 5.73 0.962 1 4 3 3 5 6 59.506 59.737 3;4 4.8563E-24 18361 20211116_3431_TMUAki_TMT10x_P_F4 170.91 145.4 61330000 103660000 418750 102550000 72042000 107030000 76248000 72960000 70126000 75324000 82563000 57101000 96722000 4267200 104760000 69153000 108000000 76933000 75971000 72050000 73468000 79260000 11 11 3 11 11 11 11 11 11 11 11 38136000 63127000 391220 65140000 51091000 81877000 48503000 43980000 42691000 46218000 51271000 35506000 58912000 3104200 66562000 48907000 81527000 49154000 46695000 43989000 45047000 49193000 6 6 2 6 6 6 6 6 6 6 6 23194000 40534000 27522 37409000 20951000 25157000 27746000 28981000 27435000 29107000 31292000 21595000 37811000 1163000 38201000 20245000 26470000 27779000 29276000 28061000 28422000 30067000 5 5 1 5 5 5 5 5 5 5 5 22001000000 9754700000 12247000000 10543 829 9795 55590;55591;55592;55593;55594;55595;55596;55597;55598;55599;55600 67328;67329;67330;67331;67332;67333;67334;67335;67336;67337;67338 67329 11 KPLVLCGDLNVAHEEIDLRNPK Unmodified 2529.3373 0.33734191 829 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes yes 0 0 0 2 By MS/MS By MS/MS 6.44 2.06 1 2 3 3 6 3 56.374 56.641 4;5 4.8827E-46 17921 20211116_3435_TMUAki_TMT10x_P_F7 218.44 212.08 213110000 327480000 1854500 327790000 280280000 394020000 246400000 306750000 274130000 276090000 271890000 198440000 305570000 19819000 335370000 267970000 395360000 252570000 315370000 277590000 270910000 262360000 20 20 13 20 20 20 20 20 20 20 20 148260000 225950000 1024400 220130000 198260000 330870000 184940000 212140000 193630000 193480000 182300000 138050000 210810000 13513000 226640000 189800000 327570000 188560000 221120000 196200000 189730000 176210000 13 13 8 13 13 13 13 13 13 13 13 64852000 101530000 830130 107660000 82012000 63151000 61464000 94609000 80505000 82607000 89591000 60389000 94763000 6305100 108730000 78165000 67786000 64010000 94245000 81389000 81172000 86144000 7 7 5 7 7 7 7 7 7 7 7 47694000000 33517000000 14176000000 10544 829 9796 55601;55602;55603;55604;55605;55606;55607;55608;55609 67339;67340;67341;67342;67343;67344;67345;67346;67347;67348;67349;67350;67351;67352;67353;67354;67355;67356;67357;67358 67347 20 KPNIFYSGPASPARPR Unmodified 1756.9373 0.93728717 2014 Q6PL18;Q6PL18-2 ATAD2 ATPase family AAA domain-containing protein 2 yes no 0 0 0 2 By MS/MS 6 0 1 1 38.337 38.343 4 3.1789E-15 8667 20211116_3434_TMUAki_TMT10x_P_F6 155.1 137.88 223040 322240 6195.7 373970 523350 512310 310820 292570 340490 270820 300680 207720 300880 28472 379930 496850 508440 327310 307910 343680 265400 291290 1 1 1 1 1 1 1 1 1 1 1 223040 322240 6195.7 373970 523350 512310 310820 292570 340490 270820 300680 207720 300880 28472 379930 496850 508440 327310 307910 343680 265400 291290 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 68010000 68010000 0 10545 2014 9797 55610 67359 67359 1 KPPARPSAAAAAIAVAAAEEER Unmodified 2146.1495 0.14946479 3318 Q9Y5J1 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes yes 0 0 0 2 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 49.142 49.417 4 7.9562E-14 15547 20211116_3446_TMUAki_TMT10x_S_F7 124.4 113.76 16749000 27574000 45416 25935000 20245000 23078000 19584000 20627000 21074000 18788000 22893000 15594000 25724000 1341800 26531000 19389000 23632000 19945000 21041000 21439000 18425000 22028000 5 5 1 5 5 5 5 5 5 5 5 6046500 10083000 0 8408300 9336800 12378000 8958600 7542600 7750000 6696700 8435700 5629200 9402400 455630 8755500 8937100 12256000 9069500 7887500 7961600 6575200 8116400 2 2 0 2 2 2 2 2 2 2 2 10702000 17491000 45416 17526000 10908000 10701000 10625000 13084000 13324000 12092000 14457000 9965000 16321000 886120 17775000 10452000 11376000 10876000 13153000 13477000 11850000 13912000 3 3 1 3 3 3 3 3 3 3 3 2820500000 1227400000 1593100000 10546 3318 9798 55611;55612;55613;55614 67360;67361;67362;67363;67364 67362 5 KPPKPQLMANYYNK Oxidation (M) 1706.8814 0.88141177 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 1 2 By MS/MS By matching 4.5 0.5 1 1 1 1 39.855 39.942 4 3.79E-06 10399 20211116_3431_TMUAki_TMT10x_P_F4 104.24 87.305 4146800 6277700 45962 8228300 14676000 11328000 6451300 4875200 6694400 4354500 5916900 3861400 5865000 528130 8302800 13868000 11204000 6981500 5266800 6772200 4274300 5731900 2 2 1 2 2 2 2 2 2 2 2 4146800 6277700 45962 8228300 14676000 11328000 6451300 4875200 6694400 4354500 5916900 3861400 5865000 528130 8302800 13868000 11204000 6981500 5266800 6772200 4274300 5731900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 359160000 332870000 26293000 10547 1684 9799 55615;55616 67365;67366 67366 2251 2 KPPLLNNADSVQAK Unmodified 1493.8202 0.82019173 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 43.706 43.938 3 9.1234E-19 11169 20211116_3447_TMUAki_TMT10x_S_F8 160.78 124.5 6615800 10264000 29670 12390000 14617000 11050000 7710800 8008500 9594400 7018200 9985400 6159900 9585200 647820 12470000 13841000 11272000 8240800 8266300 9692100 6895100 9620400 5 5 3 5 5 5 5 5 5 5 5 3681200 5358600 7607.7 6763600 11976000 8580500 4778400 4295000 5151200 3847000 5426400 3427500 5005400 405910 6827900 11301000 8532900 5234800 4569700 5233900 3775600 5226200 2 2 1 2 2 2 2 2 2 2 2 2934600 4905200 22062 5626900 2640900 2470000 2932400 3713400 4443200 3171200 4558900 2732400 4579800 241910 5642200 2539700 2738900 3006000 3696600 4458200 3119500 4394300 3 3 2 3 3 3 3 3 3 3 3 411510000 225670000 185840000 10548 586 9800 55617;55618;55619 67367;67368;67369;67370;67371 67371 5 KPPMLQPLALPPGLSVHQALER Oxidation (M) 2407.341 0.34097073 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 1 1 By MS/MS 3 0 1 1 61.124 60.697 4 5.73E-05 21557 20211116_3441_TMUAki_TMT10x_S_F3 69.133 59.212 1795300 3220300 52323 2834900 2120900 1930600 1986700 2089700 1891400 2002100 2388000 1672000 3003400 202170 2905700 2033400 2026100 2019200 2114000 1945900 1959000 2288200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1795300 3220300 52323 2834900 2120900 1930600 1986700 2089700 1891400 2002100 2388000 1672000 3003400 202170 2905700 2033400 2026100 2019200 2114000 1945900 1959000 2288200 1 1 1 1 1 1 1 1 1 1 1 402900000 0 402900000 10549 157 9801 55620 67372 67372 123 1 KPPPPVPK Unmodified 858.53272 0.5327239 3394;3238 Q9Y2H0;Q9Y2H0-1;Q9Y2H0-3 DLGAP4 Disks large-associated protein 4 no no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 33.274 33.28 3 0.0068246 7281 20211116_3428_TMUAki_TMT10x_P_F1 69.423 2.2986 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10550 3238;3394 9802 55621;55622 67373;67374 67373 2 KPRPPPALGPEETSASAGLPK Unmodified 2099.1375 0.13750312 1478 Q01105 SET Protein SET yes yes 0 0 0 2 By matching By MS/MS 8 0 2 1 1 42.401 42.531 4 7.1431E-11 10579 20211116_3447_TMUAki_TMT10x_S_F8 120.11 110.7 306110 595200 0 588410 284390 300140 286060 806370 687950 534920 605180 284960 555360 18143 596440 272270 334920 302510 786180 679340 533610 586360 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 306110 595200 0 588410 284390 300140 286060 806370 687950 534920 605180 284960 555360 18143 596440 272270 334920 302510 786180 679340 533610 586360 1 1 0 1 1 1 1 1 1 1 1 124900000 44602000 80299000 10551 1478 9803 55623;55624 67375 67375 1 KPSISITTESLK Unmodified 1302.7395 0.73948179 3160 Q9UKV3;Q9UKV3-5;Q9UKV3-2;Q9UKV3-3 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 0 0 0 1 By MS/MS 4.5 3.5 1 1 2 49.434 49.253 3 2.3119E-16 13334 20211116_3447_TMUAki_TMT10x_S_F8 179.5 128.41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10552 3160 9804 55625;55626 67376;67377 67377 2 KPTDGASSSNCVTDISHLVR Unmodified 2143.0328 0.032780052 1091 P49321;P49321-3;P49321-4;P49321-2 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 1 By MS/MS By MS/MS 6 2.08 1 1 1 2 6 2 5 8 43.192 43.45 3;4 1.4925E-71 12900 20211116_3446_TMUAki_TMT10x_S_F7 287.91 277.95 28045000 42619000 236480 55706000 50886000 55041000 31142000 38765000 40863000 34382000 40249000 26112000 39817000 1870700 55895000 48291000 55748000 32922000 40104000 41124000 33759000 38846000 17 17 7 17 17 17 17 17 17 17 17 18410000 27188000 127890 34977000 43782000 47388000 24078000 24482000 26026000 22385000 25409000 17141000 25399000 1150800 35318000 41481000 46996000 25514000 25985000 26370000 21949000 24530000 7 7 2 7 7 7 7 7 7 7 7 9635600 15431000 108590 20728000 7104400 7653100 7063900 14283000 14837000 11997000 14841000 8971500 14419000 719870 20577000 6810000 8752000 7407900 14119000 14754000 11811000 14316000 10 10 5 10 10 10 10 10 10 10 10 18824000000 14991000000 3833100000 10553 1091 9805 55627;55628;55629;55630;55631;55632;55633;55634;55635;55636;55637;55638;55639 67378;67379;67380;67381;67382;67383;67384;67385;67386;67387;67388;67389;67390;67391;67392;67393;67394;67395 67393 18 KPVADCVISIPSFFTDAERR Unmodified 2307.1682 0.16815132 442 O95757 HSPA4L Heat shock 70 kDa protein 4L yes yes 0 0 0 2 By MS/MS By matching 1.5 0.5 1 1 1 1 68.238 68.137 4 2.5044E-06 21413 20211116_3428_TMUAki_TMT10x_P_F1 86.278 71.356 2513400 4542200 101670 4324300 2416100 5283300 3171600 3068000 2813500 3088600 3463200 2341000 4237500 301770 4441200 2341800 5273400 3166500 3231700 2901000 3015600 3320700 1 1 1 1 1 1 1 1 1 1 1 2513400 4542200 101670 4324300 2416100 5283300 3171600 3068000 2813500 3088600 3463200 2341000 4237500 301770 4441200 2341800 5273400 3166500 3231700 2901000 3015600 3320700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 628550000 289920000 338630000 10554 442 9806 55640;55641 67396 67396 1 KPVAGALDVSFNK Unmodified 1344.7402 0.74015049 2594 Q99627;Q99627-2 COPS8 COP9 signalosome complex subunit 8 yes no 0 0 0 1 By MS/MS By MS/MS 3 2.92 2 1 1 3 1 53.025 52.913 3 8.3971E-15 15152 20211116_3428_TMUAki_TMT10x_P_F1 171.51 148.19 28820000 44106000 335900 47064000 41862000 50379000 29964000 30909000 31895000 29350000 35132000 26836000 41166000 2817300 47853000 39856000 50681000 31076000 32362000 32478000 28729000 33791000 6 6 5 6 6 6 6 6 6 6 6 24796000 37295000 237860 39700000 37804000 46535000 25988000 26511000 27324000 25215000 30144000 23089000 34809000 2391800 40433000 35961000 46535000 27020000 27926000 27839000 24680000 28991000 5 5 4 5 5 5 5 5 5 5 5 4023900 6810500 98036 7363400 4057400 3844300 3976300 4398600 4571300 4135500 4988500 3747300 6357000 425440 7420200 3894300 4145900 4056000 4436300 4639300 4049800 4799300 1 1 1 1 1 1 1 1 1 1 1 2818700000 2343700000 475030000 10555 2594 9807 55642;55643;55644;55645 67397;67398;67399;67400;67401;67402 67397 6 KPVGAAK Unmodified 669.41736 0.41735979 695 P16403 HIST1H1C Histone H1.2 yes yes 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 29.216 29.165 3 0.021289 5667 20211116_3428_TMUAki_TMT10x_P_F1 75.854 30.136 2954000 4589800 26296 3470800 3012700 4237700 3020500 2044900 2147400 2049400 3110700 2750600 4278600 269940 3631300 2890500 4220500 3036300 2189900 2257000 2001400 2970900 3 3 2 3 3 3 3 3 3 3 3 1914300 2934700 7043.4 2250700 1934100 3050900 1724100 1375200 1412100 1372900 2005900 1782400 2735800 165250 2356400 1849600 3021000 1750200 1482700 1471300 1340900 1916700 2 2 1 2 2 2 2 2 2 2 2 1039700 1655100 19253 1220100 1078600 1186800 1296400 669770 735330 676530 1104700 968210 1542800 104690 1274900 1040800 1199500 1286200 707270 785730 660460 1054300 1 1 1 1 1 1 1 1 1 1 1 272270000 136570000 135700000 10556 695 9808 55646;55647;55648 67403;67404;67405 67403 3 KPVIVFVPSR Unmodified 1140.7019 0.70191449 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 1 By MS/MS 5 0 1 1 49.447 49.632 3 0.00087787 14493 20211116_3433_TMUAki_TMT10x_P_F5 79.82 51.652 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10557 352 9809 55649 67406 67406 1 KPVSRPATAAAAAAGSR Unmodified 1580.8747 0.87468691 2081 Q7Z478 DHX29 ATP-dependent RNA helicase DHX29 yes yes 0 0 0 2 By MS/MS By MS/MS 3.83 1.07 1 1 2 2 5 1 28.7 28.607 3;4 2.7911E-21 5788 20211116_3431_TMUAki_TMT10x_P_F4 169.43 153.54 742320 1205800 13586 1083000 1042800 1215100 819940 745020 806660 887180 982680 691230 1124700 72352 1115500 994670 1219100 842940 785470 827460 860610 942500 6 6 3 6 6 6 6 6 6 6 6 484120 753800 6134.9 682020 723690 934720 541980 496960 520860 641080 624930 450760 703100 43149 704620 689310 926810 558600 531680 534500 620180 599620 4 4 1 4 4 4 4 4 4 4 4 258210 452040 7450.9 400990 319070 280330 277960 248070 285800 246100 357750 240470 421610 29204 410880 305360 292300 284340 253790 292960 240440 342880 2 2 2 2 2 2 2 2 2 2 2 126080000 87869000 38210000 10558 2081 9810 55650;55651;55652;55653;55654;55655 67407;67408;67409;67410;67411;67412 67408 6 KPVTDCVISVPSFFTDAER Unmodified 2167.062 0.061954915 2345 Q92598;Q92598-2;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 1 By MS/MS 8 0 1 1 71.05 71.112 3 0.083032 22789 20211116_3436_TMUAki_TMT10x_P_F8 34.265 28.349 2929200 4952600 9001.2 5667500 2544400 4663200 3095900 2188800 2539300 2213800 3652500 2727400 4624000 245850 5716300 2454100 4756900 3094200 2351000 2647100 2161100 3489000 1 1 1 1 1 1 1 1 1 1 1 2929200 4952600 9001.2 5667500 2544400 4663200 3095900 2188800 2539300 2213800 3652500 2727400 4624000 245850 5716300 2454100 4756900 3094200 2351000 2647100 2161100 3489000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1324800000 1324800000 0 10559 2345 9811 55656 67413 67413 1 KPVTDCVISVPSFFTDAERR Unmodified 2323.1631 0.16306594 2345 Q92598;Q92598-2;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 2 By MS/MS By MS/MS 5.67 3.3 1 2 2 1 63.366 63.425 4 1.3382E-41 19521 20211116_3436_TMUAki_TMT10x_P_F8 212.74 171.54 58079000 86785000 1192100 99795000 55027000 81364000 61072000 53965000 53819000 55771000 66141000 54085000 81028000 5737400 100610000 52977000 83409000 61407000 56304000 55506000 54395000 63423000 8 8 6 8 8 8 8 8 8 8 8 39154000 56439000 906460 67109000 35825000 63117000 40752000 35495000 36257000 37722000 44386000 36463000 52704000 4011100 67648000 34527000 63925000 40940000 37549000 37371000 36750000 42566000 5 5 4 5 5 5 5 5 5 5 5 18925000 30346000 285680 32687000 19202000 18247000 20320000 18470000 17561000 18049000 21755000 17622000 28325000 1726300 32964000 18450000 19485000 20468000 18755000 18135000 17645000 20857000 3 3 2 3 3 3 3 3 3 3 3 6389000000 5212600000 1176400000 10560 2345 9812 55657;55658;55659 67414;67415;67416;67417;67418;67419;67420;67421 67418 8 KPVVDCVVSVPCFYTDAER Unmodified 2240.0606 0.060574706 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 63.473 63.749 3 2.3391E-17 21422 20211116_3446_TMUAki_TMT10x_S_F7 141.97 136.54 18761000 29670000 47390 31966000 18883000 29945000 21841000 18723000 19733000 21372000 22686000 17468000 27694000 1510900 32418000 18177000 30378000 21934000 19682000 20272000 20764000 21793000 6 6 1 6 6 6 6 6 6 6 6 8962300 13907000 47390 14927000 9408400 18862000 11245000 9176900 10424000 10691000 10790000 8344600 12980000 720970 15215000 9065600 18755000 11285000 9864600 10653000 10379000 10397000 3 3 1 3 3 3 3 3 3 3 3 9798900 15763000 0 17039000 9474800 11083000 10596000 9546500 9309200 10680000 11896000 9123600 14713000 789970 17204000 9111900 11623000 10649000 9817700 9618600 10384000 11395000 3 3 0 3 3 3 3 3 3 3 3 3811400000 1906800000 1904600000 10561 916 9813 55660;55661;55662;55663 67422;67423;67424;67425;67426;67427 67426 6 KPVVDCVVSVPCFYTDAERR Unmodified 2396.1617 0.16168573 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 2 By MS/MS By MS/MS 5.43 2.87 2 1 2 2 4 3 56.949 57.111 4 4.0649E-32 16913 20211116_3436_TMUAki_TMT10x_P_F8 192.18 177.02 59068000 90843000 1055000 97532000 64477000 86050000 63690000 54661000 51338000 55046000 64925000 55005000 84791000 5860100 98855000 61861000 87665000 64263000 57171000 53250000 53745000 62210000 11 11 9 11 11 11 11 11 11 11 11 40745000 59556000 711540 65746000 47298000 68569000 45573000 37149000 34021000 35895000 40334000 37943000 55595000 4112800 66677000 45350000 68973000 45959000 39319000 35340000 35109000 38714000 7 7 6 7 7 7 7 7 7 7 7 18323000 31287000 343500 31786000 17178000 17481000 18117000 17512000 17317000 19151000 24590000 17062000 29196000 1747300 32178000 16511000 18692000 18303000 17852000 17910000 18636000 23496000 4 4 3 4 4 4 4 4 4 4 4 22689000000 12021000000 10667000000 10562 916 9814 55664;55665;55666;55667;55668;55669;55670 67428;67429;67430;67431;67432;67433;67434;67435;67436;67437;67438 67433 11 KPVVTFQAHDGPVYSMVSTDR Unmodified 2333.1474 0.14741588 2119 Q86W42;Q86W42-3;Q86W42-2 THOC6 THO complex subunit 6 homolog yes no 0 0 0 1 By MS/MS 8 0 1 1 51.013 50.915 4 0.0067134 14049 20211116_3447_TMUAki_TMT10x_S_F8 48.5 38.161 1749700 3079600 20691 3282900 1867700 1570800 1541500 2687900 2434500 2356900 2524200 1629300 2874400 166000 3309100 1783900 1730900 1608300 2666500 2440800 2315500 2432200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1749700 3079600 20691 3282900 1867700 1570800 1541500 2687900 2434500 2356900 2524200 1629300 2874400 166000 3309100 1783900 1730900 1608300 2666500 2440800 2315500 2432200 1 1 1 1 1 1 1 1 1 1 1 196700000 0 196700000 10563 2119 9815 55671 67439 67439 1 KPYIWEYSR Unmodified 1240.6241 0.6240581 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 48.427 48.146 3 0.0072688 14806 20211116_3429_TMUAki_TMT10x_P_F2 65.056 50.191 2452400 4013400 23850 4994300 7363000 6670900 4391200 2815300 2559000 2698200 3375300 2283600 3748600 294320 5050800 6986700 6605800 4552900 3053500 2712500 2640000 3230700 1 1 1 1 1 1 1 1 1 1 1 2452400 4013400 23850 4994300 7363000 6670900 4391200 2815300 2559000 2698200 3375300 2283600 3748600 294320 5050800 6986700 6605800 4552900 3053500 2712500 2640000 3230700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 332030000 332030000 0 10564 542 9816 55672;55673 67440;67441 67441 2 KPYNPILGETFR Unmodified 1433.7667 0.76669959 2737 Q9BZF1;Q9BZF1-3;Q9BZF1-2;Q9H0X9;Q9H0X9-3;Q9H0X9-2 OSBPL8;OSBPL5 Oxysterol-binding protein-related protein 8;Oxysterol-binding protein-related protein 5 yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 51.63 51.45 3 3.2126E-08 14865 20211116_3440_TMUAki_TMT10x_S_F2 118.73 99.488 16432000 23291000 129250 27770000 28424000 31454000 21845000 13677000 12314000 12331000 18854000 15300000 21749000 1576300 28068000 27091000 31416000 22207000 14763000 13177000 12099000 17985000 3 3 2 3 3 3 3 3 3 3 3 16432000 23291000 129250 27770000 28424000 31454000 21845000 13677000 12314000 12331000 18854000 15300000 21749000 1576300 28068000 27091000 31416000 22207000 14763000 13177000 12099000 17985000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 640290000 555340000 84945000 10565 2737 9817 55674;55675;55676;55677 67442;67443;67444;67445 67445 4 KQAEILQESR Unmodified 1200.6463 0.64625011 323 O75347;O75347-2 TBCA Tubulin-specific chaperone A yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 32.95 32.936 3 0.036644 7580 20211116_3431_TMUAki_TMT10x_P_F4 52.576 34.712 1084700 1736600 3211.7 1814200 1842300 1740900 1301200 862270 1115700 898690 1333400 1010000 1620800 103530 1844200 1753100 1758200 1342400 922130 1150900 876210 1279500 1 1 1 1 1 1 1 1 1 1 1 1084700 1736600 3211.7 1814200 1842300 1740900 1301200 862270 1115700 898690 1333400 1010000 1620800 103530 1844200 1753100 1758200 1342400 922130 1150900 876210 1279500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 67494000 67494000 0 10566 323 9818 55678;55679 67446 67446 1 KQAGPASVPLRTEEEFK Unmodified 1885.9898 0.98977625 868 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 2 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 40.76 40.869 4 3.4021E-15 9909 20211116_3445_TMUAki_TMT10x_S_F6 148.24 130.09 3821900 5972100 54335 8533800 9011600 7051100 4561900 3127900 4324500 3860700 5271400 3559000 5582200 439860 8502800 8532200 7186500 4852600 3400200 4443400 3740300 5055800 3 3 2 3 3 3 3 3 3 3 3 2911900 4524100 45001 6508800 8388700 6532800 3992300 2385400 3303300 3008100 4062000 2711600 4228900 360060 6500200 7935700 6560500 4258100 2653300 3417600 2912200 3895000 1 1 1 1 1 1 1 1 1 1 1 910030 1448000 9333.6 2025100 622930 518290 569610 742480 1021200 852560 1209400 847390 1353300 79798 2002600 596490 625980 594550 746890 1025800 828120 1160800 2 2 1 2 2 2 2 2 2 2 2 677220000 635770000 41452000 10567 868 9819 55680;55681 67447;67448;67449 67449 3 KQAQVATGGGPGAPPGSQPDYSAAWAEYYR Unmodified 3079.4424 0.44241193 2380 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 0 1 By MS/MS 8 0 1 1 56.871 57.021 4 0.10501 16960 20211116_3436_TMUAki_TMT10x_P_F8 22.436 15.86 988950 1919300 14289 1677600 1147400 2086300 1457000 1329300 1217000 1283200 1330400 920920 1790000 97528 1734600 1108800 2083200 1454300 1388400 1252600 1255100 1279900 1 1 1 1 1 1 1 1 1 1 1 988950 1919300 14289 1677600 1147400 2086300 1457000 1329300 1217000 1283200 1330400 920920 1790000 97528 1734600 1108800 2083200 1454300 1388400 1252600 1255100 1279900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 839530000 839530000 0 10568 2380 9820 55682 67450 67450 1 KQDADSLQR Unmodified 1059.5309 0.530886 667 P14324;P14324-2 FDPS Farnesyl pyrophosphate synthase yes no 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 28.007 27.849 3 0.0043582 5426 20211116_3431_TMUAki_TMT10x_P_F4 73.951 53.855 345830 535200 2232.6 459930 419480 543980 398800 302340 364110 311020 390520 321980 499120 27598 475780 401560 543560 404530 319850 372880 303400 375910 2 2 1 2 2 2 2 2 2 2 2 219160 310100 2232.6 277150 265730 375370 230540 188870 235530 203450 244100 204080 289230 20903 286530 254040 372150 235840 201880 239700 198100 235210 1 1 1 1 1 1 1 1 1 1 1 126670 225100 0 182790 153760 168610 168260 113470 128580 107570 146430 117910 209880 6695.3 189250 147520 171400 168690 117980 133180 105300 140700 1 1 0 1 1 1 1 1 1 1 1 8048500 4796800 3251700 10569 667 9821 55683;55684;55685 67451;67452 67451 2 KQEGTPEGLYL Unmodified 1233.6241 0.62411768 1336 P62191;P62191-2 PSMC1 26S protease regulatory subunit 4 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 52.25 52.188 2 0.0043982 15247 20211116_3431_TMUAki_TMT10x_P_F4 94.692 79.541 7685400 11801000 50665 16161000 14414000 12802000 7968800 9105300 10149000 8453900 10809000 7155400 11027000 678150 16129000 13656000 13166000 8487600 9424700 10253000 8283400 10407000 4 4 2 4 4 4 4 4 4 4 4 4242300 6156400 15678 9044100 11842000 10345000 5950200 5026200 5473000 4580400 5994000 3949500 5755400 395810 9042000 11203000 10339000 6328800 5365400 5607200 4491800 5766100 2 2 1 2 2 2 2 2 2 2 2 3443100 5644100 34987 7117100 2572100 2456900 2018600 4079100 4675800 3873500 4815000 3205900 5272100 282340 7086900 2452900 2826800 2158800 4059300 4645500 3791500 4640500 2 2 1 2 2 2 2 2 2 2 2 1048900000 583090000 465790000 10570 1336 9822 55686;55687;55688;55689 67453;67454;67455 67454 3 KQEIFYTAIVNR Unmodified 1480.8038 0.80381338 2939 Q9NRZ9;Q9NRZ9-4;Q9NRZ9-3;Q9NRZ9-2;Q9NRZ9-6;Q9NRZ9-5 HELLS Lymphoid-specific helicase yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 53.339 53.099 3 8.0852E-12 16834 20211116_3429_TMUAki_TMT10x_P_F2 164.81 130.28 17073000 27216000 92541 28287000 23350000 28451000 17912000 18244000 18591000 17580000 21896000 15897000 25399000 1557600 28784000 22256000 28745000 18475000 19044000 19001000 17197000 21020000 4 4 2 4 4 4 4 4 4 4 4 11584000 18290000 92541 19041000 18002000 24361000 13691000 12447000 13131000 12057000 14827000 10787000 17069000 1117900 19452000 17157000 24221000 14096000 13244000 13443000 11792000 14250000 3 3 2 3 3 3 3 3 3 3 3 5489000 8925800 0 9245600 5348700 4090400 4221100 5797200 5460400 5522700 7069600 5110700 8329900 439610 9332300 5099300 4523400 4379000 5799800 5557900 5405100 6770000 1 1 0 1 1 1 1 1 1 1 1 1258800000 675600000 583160000 10571 2939 9823 55690;55691;55692;55693 67456;67457;67458;67459 67457 4 KQELEEICHDLEAR Unmodified 1768.8414 0.84139745 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 1 By MS/MS By MS/MS 1.67 0.745 3 2 1 3 3 55.472 55.282 3;4 4.0102E-10 18300 20211116_3430_TMUAki_TMT10x_P_F3 138.91 117.65 21271000 34194000 238400 35747000 27845000 33992000 23159000 27331000 27985000 26901000 28342000 19806000 31912000 1923900 36332000 26586000 34587000 23886000 28111000 28271000 26290000 27330000 9 9 5 9 9 9 9 9 9 9 9 10585000 16180000 27102 17353000 17837000 23853000 13362000 13494000 13884000 13065000 13797000 9854600 15102000 893260 17718000 16985000 23666000 13804000 14230000 14098000 12778000 13312000 5 5 2 5 5 5 5 5 5 5 5 10686000 18014000 211300 18393000 10009000 10139000 9797100 13837000 14101000 13835000 14545000 9951000 16810000 1030600 18614000 9601400 10921000 10082000 13881000 14173000 13512000 14018000 4 4 3 4 4 4 4 4 4 4 4 3302000000 2308600000 993410000 10572 934 9824 55694;55695;55696;55697;55698;55699 67460;67461;67462;67463;67464;67465;67466;67467;67468;67469 67464 10 KQELEEICHDLEARVEEEEER Unmodified 2669.2239 0.22388788 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 2 By MS/MS 1 0 1 1 68.618 68.618 5 4.8532E-07 21694 20211116_3428_TMUAki_TMT10x_P_F1 84.602 76.798 2492200 3779700 34951 3356500 2269100 4766000 3021700 2659400 3122500 2794300 3305700 2320800 3525300 236070 3475100 2196800 4721000 3028800 2814300 3178700 2723500 3183200 1 1 1 1 1 1 1 1 1 1 1 2492200 3779700 34951 3356500 2269100 4766000 3021700 2659400 3122500 2794300 3305700 2320800 3525300 236070 3475100 2196800 4721000 3028800 2814300 3178700 2723500 3183200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 882040000 882040000 0 10573 934 9825 55700 67470 67470 1 KQELEEILHDLESR Unmodified 1737.8897 0.88972785 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 1 By MS/MS By MS/MS 1.6 0.8 3 1 1 2 3 76.071 75.994 3;4 3.0948E-33 26544 20211116_3439_TMUAki_TMT10x_S_F1 224.06 183.79 6478100 10047000 99723 10396000 6574100 11364000 7424300 6216200 6623700 7276400 7614300 6032500 9375900 630520 10595000 6330900 11402000 7461500 6611700 6808700 7062800 7314600 5 5 4 5 5 5 5 5 5 5 5 5035400 7445500 76156 7951000 5101000 9474200 5579400 4736000 5084700 5574900 5736800 4689000 6949400 489360 8098400 4907700 9451200 5619100 5079500 5217600 5410200 5513900 3 3 3 3 3 3 3 3 3 3 3 1442700 2601100 23567 2444500 1473100 1889900 1844900 1480200 1539000 1701500 1877500 1343500 2426500 141160 2496600 1423200 1950300 1842400 1532200 1591100 1652700 1800700 2 2 1 2 2 2 2 2 2 2 2 2231500000 1223900000 1007600000 10574 935 9826 55701;55702;55703;55704;55705 67471;67472;67473;67474;67475;67476 67474 6 KQELLEALTK Unmodified 1171.6812 0.68123863 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 1 By MS/MS By MS/MS 6.36 2.57 2 4 5 3 8 61.477 61.584 2;3 3.8462E-09 17837 20211116_3447_TMUAki_TMT10x_S_F8 136.61 94.274 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10575 647 9827 55706;55707;55708;55709;55710;55711;55712;55713;55714;55715;55716 67477;67478;67479;67480;67481;67482;67483;67484;67485;67486;67487 67487 11 KQEQANNPFYIK Unmodified 1478.7518 0.75177781 120 O14617;O14617-2;O14617-5;O14617-3;O14617-4 AP3D1 AP-3 complex subunit delta-1 yes no 0 0 0 1 By MS/MS By matching 8 0 2 1 1 45.016 45.064 3 0.054789 12122 20211116_3436_TMUAki_TMT10x_P_F8 42.789 29.109 1036400 1838100 17165 1549400 4357500 5839400 2769100 4571600 4750400 3008800 2834700 965140 1714000 148440 1665200 4139200 5655700 2953200 4665300 4678100 3002900 2793800 1 1 1 1 1 1 1 1 1 1 1 1036400 1838100 17165 1549400 4357500 5839400 2769100 4571600 4750400 3008800 2834700 965140 1714000 148440 1665200 4139200 5655700 2953200 4665300 4678100 3002900 2793800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 135930000 79095000 56838000 10576 120 9828 55717;55718 67488 67488 1 KQEQLTPGVVYVR Unmodified 1515.8409 0.84092717 2730 Q9BYG3 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes yes 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 41.51 41.687 3 1.4772E-22 10703 20211116_3436_TMUAki_TMT10x_P_F8 200.16 174.69 1640000 2514400 10479 3515300 3030700 2634600 1790700 1820100 2431500 1900500 2257500 1527000 2350000 165000 3502400 2875400 2720000 1901000 1894000 2439400 1852800 2183100 2 2 1 2 2 2 2 2 2 2 2 911900 1354600 0 1860900 2571200 2178100 1297500 1012500 1352000 1048000 1231800 849070 1265900 98631 1867400 2433400 2173200 1384400 1089300 1368800 1022000 1192000 1 1 0 1 1 1 1 1 1 1 1 728050 1159800 10479 1654400 459510 456450 493160 807620 1079500 852550 1025800 677970 1084100 66366 1634900 442080 546790 516620 804750 1070600 830790 991180 1 1 1 1 1 1 1 1 1 1 1 384910000 275570000 109340000 10577 2730 9829 55719;55720;55721 67489;67490;67491 67490 3 KQEVQAWDGEVR Unmodified 1443.7106 0.71064128 1036 P45974;P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 39.096 39.126 3 1.9506E-07 10079 20211116_3431_TMUAki_TMT10x_P_F4 132.08 111.98 863240 1237500 43102 1756000 4009400 1940400 1488800 873900 932100 811180 1458900 804080 1156600 155800 1757600 3783700 1941400 1624700 940460 991310 794830 1391100 1 1 1 1 1 1 1 1 1 1 1 863240 1237500 43102 1756000 4009400 1940400 1488800 873900 932100 811180 1458900 804080 1156600 155800 1757600 3783700 1941400 1624700 940460 991310 794830 1391100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 460690000 460690000 0 10578 1036 9830 55722;55723 67492 67492 1 KQFEELTLGEFLK Unmodified 1580.845 0.84500949 188 O15392;O15392-5;O15392-4;O15392-2 BIRC5 Baculoviral IAP repeat-containing protein 5 yes no 0 0 0 1 By MS/MS 7 0 1 1 75.669 75.825 3 0.019324 26051 20211116_3435_TMUAki_TMT10x_P_F7 55.724 35.061 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10579 188 9831 55724 67493 67493 1 KQGGLGPMNIPLVSDPK Oxidation (M) 1765.9397 0.93965493 1533 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 1 1 By MS/MS By MS/MS 4.5 3.5 4 4 4 4 52.473 52.402 3;4 1.2421E-05 16967 20211116_3439_TMUAki_TMT10x_S_F1 91.657 77.399 43533000 72346000 234430 84662000 60947000 70960000 43840000 60102000 68173000 57245000 60779000 40533000 67553000 3848100 85294000 58008000 72890000 46116000 61570000 68027000 56026000 58860000 16 16 7 16 16 16 16 16 16 16 16 21822000 35191000 92338 41192000 45123000 53746000 30195000 29393000 32515000 27101000 29579000 20318000 32859000 2124600 41787000 42890000 53432000 31480000 31045000 32873000 26562000 28625000 8 8 4 8 8 8 8 8 8 8 8 21711000 37156000 142100 43469000 15824000 17213000 13645000 30709000 35657000 30144000 31200000 20215000 34694000 1723500 43507000 15118000 19458000 14636000 30525000 35154000 29464000 30235000 8 8 3 8 8 8 8 8 8 8 8 7013200000 4225600000 2787500000 10580 1533 9832 55725;55726;55727;55728;55729;55730;55731;55732 67494;67495;67496;67497;67498;67499;67500;67501;67502;67503;67504;67505;67506;67507;67508;67509 67503 2067 16 KQGGLGPMNIPLVSDPK Unmodified 1749.9447 0.94474031 1533 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 2.12 2 5 1 5 3 60.268 60.111 3;4 1.1561E-07 19712 20211116_3429_TMUAki_TMT10x_P_F2 107.66 95.296 65765000 103350000 143970 136030000 73124000 59909000 64729000 31778000 26507000 35722000 65730000 61231000 96562000 5153000 135330000 69878000 65095000 64913000 33848000 30031000 34726000 62193000 11 11 6 11 11 11 11 11 11 11 11 29545000 43371000 52636 56539000 41744000 39660000 37221000 13637000 12498000 15605000 27927000 27507000 40519000 2315500 56497000 39893000 40859000 37226000 15238000 14344000 15160000 26462000 5 5 2 5 5 5 5 5 5 5 5 36220000 59983000 91338 79492000 31380000 20249000 27508000 18141000 14009000 20117000 37803000 33724000 56043000 2837500 78831000 29985000 24235000 27687000 18610000 15687000 19566000 35731000 6 6 4 6 6 6 6 6 6 6 6 8056700000 4643200000 3413500000 10581 1533 9832 55733;55734;55735;55736;55737;55738;55739;55740 67510;67511;67512;67513;67514;67515;67516;67517;67518;67519;67520;67521 67513 12 KQGGLGPMNIPLVSDPKR Oxidation (M) 1922.0408 0.040765963 1533 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 1 2 By MS/MS By MS/MS 2.25 0.829 2 2 4 4 4 45.791 45.641 4;5 5.0646E-08 13671 20211116_3429_TMUAki_TMT10x_P_F2 105.06 99.345 22223000 35722000 611980 39021000 47469000 58646000 30285000 62401000 63470000 47106000 43320000 20696000 33345000 2532900 39868000 45119000 58618000 32645000 62797000 62403000 46637000 42413000 13 13 9 13 13 13 13 13 13 13 13 14711000 21935000 490100 24944000 39699000 50439000 24379000 38649000 38763000 29742000 26625000 13701000 20479000 2017700 25616000 37709000 49546000 25975000 39624000 38375000 29414000 26060000 7 7 5 7 7 7 7 7 7 7 7 7512100 13787000 121890 14076000 7770000 8206800 5906400 23752000 24707000 17365000 16695000 6995300 12866000 515210 14252000 7410000 9071900 6670500 23174000 24028000 17223000 16353000 6 6 4 6 6 6 6 6 6 6 6 12229000000 7865700000 4363100000 10582 1533 9833 55741;55742;55743;55744;55745;55746;55747;55748 67522;67523;67524;67525;67526;67527;67528;67529;67530;67531;67532;67533;67534 67524 2067 13 KQGGLGPMNIPLVSDPKR Unmodified 1906.0459 0.045851341 1533 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 2 By MS/MS By MS/MS 3.33 0.745 1 2 3 4 2 52.541 52.48 4;5 9.2993E-32 15773 20211116_3442_TMUAki_TMT10x_S_F4 197.09 184.71 96620000 156860000 1483800 172980000 158530000 140390000 123350000 79745000 52135000 75813000 119440000 89972000 146430000 10080000 174850000 151200000 143670000 124760000 84022000 58543000 74205000 113130000 10 10 6 10 10 10 10 10 10 10 10 53007000 76523000 1382700 88375000 109910000 105570000 90924000 42422000 27119000 40173000 63420000 49365000 71449000 6446500 89577000 104990000 105070000 91246000 46251000 31669000 39327000 60056000 5 5 4 5 5 5 5 5 5 5 5 43612000 80335000 101080 84609000 48612000 34819000 32429000 37323000 25016000 35640000 56018000 40607000 74977000 3633300 85269000 46202000 38599000 33511000 37771000 26874000 34877000 53079000 5 5 2 5 5 5 5 5 5 5 5 17172000000 10729000000 6443000000 10583 1533 9833 55749;55750;55751;55752;55753;55754 67535;67536;67537;67538;67539;67540;67541;67542;67543;67544 67543 10 KQIEELK Unmodified 886.51238 0.51238239 588 P09936 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1 yes yes 0 0 0 1 By MS/MS 5 0 1 1 37.196 37.168 3 0.058713 9570 20211116_3433_TMUAki_TMT10x_P_F5 49.85 9.9314 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10584 588 9834 55755 67545 67545 1 KQININNPFVFK Unmodified 1460.814 0.81398414 3155 Q9UKF6 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 yes yes 0 0 0 1 By MS/MS 5 0 1 1 61.865 62.024 3 0.0010662 19549 20211116_3433_TMUAki_TMT10x_P_F5 71.555 45.041 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10585 3155 9835 55756 67546 67546 1 KQIWTLEQPPDEAGSAAVCLR Unmodified 2368.1845 0.18452967 1859 Q16658 FSCN1 Fascin yes yes 0 0 0 1 By MS/MS By MS/MS 6.6 0.49 2 3 2 3 60.542 60.898 3;4 3.8635E-26 20259 20211116_3446_TMUAki_TMT10x_S_F7 163.53 154.28 19187000 31675000 107770 34464000 22508000 23027000 22603000 14567000 12153000 14717000 22136000 17866000 29566000 1657200 34791000 21585000 23974000 22599000 15242000 13176000 14367000 21044000 8 8 4 8 8 8 8 8 8 8 8 8048900 13100000 26018 13901000 8801000 12912000 10198000 5836600 5003300 5738000 8649700 7494000 12226000 633150 14110000 8471000 13056000 10110000 6288300 5446700 5608100 8231200 4 4 1 4 4 4 4 4 4 4 4 11139000 18575000 81747 20563000 13707000 10115000 12405000 8730000 7150200 8978800 13486000 10372000 17340000 1024000 20681000 13114000 10918000 12489000 8953400 7728900 8758900 12813000 4 4 3 4 4 4 4 4 4 4 4 3937900000 1619900000 2317900000 10586 1859 9836 55757;55758;55759;55760;55761 67547;67548;67549;67550;67551;67552;67553;67554 67553 8 KQKVEGTEPTTAFNLFVGNLNFNK Unmodified 2695.397 0.39696528 729 P19338 NCL Nucleolin yes yes 0 0 0 2 By MS/MS By MS/MS 4 0.667 2 5 2 5 4 73.367 73.313 3;4;5 2.7006E-72 23850 20211116_3431_TMUAki_TMT10x_P_F4 243.18 235.41 84041000 155630000 783990 99732000 122990000 182130000 123400000 168970000 151540000 147330000 132940000 78250000 145010000 5357200 106920000 117930000 180170000 126020000 171820000 152280000 144780000 128820000 20 20 7 20 20 20 20 20 20 20 20 40551000 73734000 256810 40361000 50025000 116790000 64045000 88092000 77049000 70733000 61112000 37756000 68677000 1863400 44675000 48314000 113620000 64633000 90495000 77249000 69796000 59446000 9 9 4 9 9 9 9 9 9 9 9 43491000 81891000 527180 59371000 72967000 65338000 59356000 80880000 74493000 76598000 71827000 40494000 76329000 3493800 62248000 69620000 66543000 61388000 81321000 75027000 74986000 69372000 11 11 3 11 11 11 11 11 11 11 11 37435000000 22090000000 15345000000 10587 729 9837 55762;55763;55764;55765;55766;55767;55768;55769;55770 67555;67556;67557;67558;67559;67560;67561;67562;67563;67564;67565;67566;67567;67568;67569;67570;67571;67572;67573;67574 67560 20 KQLADETLLKVDLENR Unmodified 1884.0316 0.031641065 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 2 By MS/MS 6 0 1 1 56.465 56.544 4 0.051747 16156 20211116_3434_TMUAki_TMT10x_P_F6 41.862 22.284 5619700 8775800 138870 8481500 8559000 13947000 7208100 8741400 8142700 7565500 7471600 5233500 8187600 636500 8755000 8181200 13754000 7411100 9115100 8219100 7437300 7228400 1 1 1 1 1 1 1 1 1 1 1 5619700 8775800 138870 8481500 8559000 13947000 7208100 8741400 8142700 7565500 7471600 5233500 8187600 636500 8755000 8181200 13754000 7411100 9115100 8219100 7437300 7228400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 262870000 262870000 0 10588 748 9838 55771 67575 67575 1 KQLELRQEEER Unmodified 1456.7634 0.76340513 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 2 By MS/MS 4.5 0.5 1 1 2 30.477 30.46 4 4.7902E-07 6560 20211116_3431_TMUAki_TMT10x_P_F4 138.02 95.937 348280 521030 5702.6 503390 702420 736540 407220 456210 467200 386650 503890 324330 486110 39150 518270 666440 729660 430350 475910 473970 380490 484950 1 1 1 1 1 1 1 1 1 1 1 348280 521030 5702.6 503390 702420 736540 407220 456210 467200 386650 503890 324330 486110 39150 518270 666440 729660 430350 475910 473970 380490 484950 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 40601000 40601000 0 10589 1779 9839 55772;55773 67576 67576 1 KQMVIDVLHPGK Oxidation (M) 1379.7595 0.75950572 1371 P62847;P62847-2;P62847-3;P62847-4 RPS24 40S ribosomal protein S24 yes no 0 0 1 1 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 43.177 43.132 4 0.0016848 11180 20211116_3428_TMUAki_TMT10x_P_F1 72.937 57.964 8933300 14445000 93358 14464000 18946000 17085000 10436000 14578000 15158000 11955000 13553000 8317800 13479000 877930 14793000 17952000 17187000 11177000 14870000 15157000 11784000 13124000 6 6 3 6 6 6 6 6 6 6 6 5404000 8531200 91346 8805700 15250000 14087000 7260200 8499200 9541500 7293900 8362300 5032300 7961500 666260 9042900 14427000 13899000 7852700 8887300 9565200 7173300 8103300 3 3 2 3 3 3 3 3 3 3 3 3529300 5914000 2011.9 5658100 3696200 2998700 3175600 6078500 5616900 4661200 5190800 3285500 5517400 211670 5750500 3525600 3288100 3323900 5982300 5592200 4610700 5020600 3 3 1 3 3 3 3 3 3 3 3 1678400000 1171000000 507380000 10590 1371 9840 55774;55775;55776;55777;55778;55779 67577;67578;67579;67580;67581;67582 67577 1844 6 KQMVIDVLHPGK Unmodified 1363.7646 0.7645911 1371 P62847;P62847-2;P62847-3;P62847-4 RPS24 40S ribosomal protein S24 yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 50.381 50.185 4 0.0019429 14386 20211116_3440_TMUAki_TMT10x_S_F2 70.412 55.44 5403100 8539700 162090 10078000 10818000 7675800 6230500 5800700 5213900 4774100 7128400 5032000 7974200 674850 10136000 10267000 7925600 6528200 5961600 5416600 4704900 6817200 2 2 2 2 2 2 2 2 2 2 2 2551500 4068700 80651 4734900 8233100 5830700 4081200 2432400 2480800 2174400 3171500 2376300 3799100 366270 4799700 7794800 5795900 4307300 2636800 2618300 2134200 3038000 1 1 1 1 1 1 1 1 1 1 1 2851600 4470900 81438 5342600 2584600 1845200 2149300 3368300 2733100 2599700 3956900 2655800 4175100 308580 5336500 2472200 2129700 2220900 3324800 2798300 2570700 3779200 1 1 1 1 1 1 1 1 1 1 1 1109100000 887350000 221780000 10591 1371 9840 55780;55781 67583;67584 67584 2 KQPALDVLYDVMK Oxidation (M) 1534.8065 0.8065155 1684 Q14152 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 0 0 1 1 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 56.766 56.878 3 0.0011291 4961 20211116_3447_TMUAki_TMT10x_S_F8 72.891 53.052 978770 1710200 24175 1547400 1168800 1161400 1162700 1677600 1602200 1596000 1500300 911520 1595200 106340 1584400 1122000 1218600 1193300 1677200 1607100 1562100 1450500 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 978770 1710200 24175 1547400 1168800 1161400 1162700 1677600 1602200 1596000 1500300 911520 1595200 106340 1584400 1122000 1218600 1193300 1677200 1607100 1562100 1450500 3 3 3 3 3 3 3 3 3 3 3 74234000 0 74234000 10592 1684 9841 55782;55783;55784 67585;67586;67587;67588 67588 2252 4 KQPALDVLYDVMK Unmodified 1518.8116 0.81160087 1684 Q14152 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 73.206 73.143 3 0.0023672 23501 20211116_3436_TMUAki_TMT10x_P_F8 68.283 35.785 25889000 38398000 163630 42657000 30343000 32836000 33620000 12211000 7804000 15338000 26313000 24105000 35846000 2221000 43069000 29178000 33594000 33132000 13550000 9725700 14851000 24810000 3 3 1 3 3 3 3 3 3 3 3 15759000 23612000 163630 26179000 19202000 26765000 24752000 7836500 4758000 10254000 16490000 14674000 22042000 1447200 26534000 18557000 26805000 24198000 8995200 6131700 9915200 15544000 2 2 1 2 2 2 2 2 2 2 2 10129000 14786000 0 16478000 11141000 6071100 8868600 4374500 3046000 5083500 9822700 9430700 13804000 773830 16535000 10620000 6788600 8934400 4554500 3594000 4935600 9265900 1 1 0 1 1 1 1 1 1 1 1 938490000 632450000 306040000 10593 1684 9841 55785;55786 67589;67590;67591 67589 3 KQPPVSPGTALVGSQK Unmodified 1592.8886 0.88860564 702 P17096;P17096-3 HMGA1 High mobility group protein HMG-I/HMG-Y yes no 0 0 0 1 By MS/MS By MS/MS 1.67 0.471 2 4 4 2 41.843 41.768 3;4 5.0075E-15 12236 20211116_3429_TMUAki_TMT10x_P_F2 148.44 134.28 6154700 9616300 24659 12339000 12591000 10628000 6788700 7502400 8335600 6616500 9307300 5730600 8983200 590740 12370000 11926000 10862000 7237300 7759200 8446800 6498500 8948400 6 6 3 6 6 6 6 6 6 6 6 3661300 5719700 24307 7502000 10531000 9046300 4876500 4655100 5575200 4177600 5474300 3409100 5343800 408130 7550500 9956000 9021800 5263800 4940300 5637700 4099700 5284000 4 4 2 4 4 4 4 4 4 4 4 2493500 3896600 352.14 4837000 2059900 1581400 1912200 2847400 2760400 2438900 3833100 2321500 3639400 182610 4819500 1970200 1840300 1973600 2818900 2809200 2398800 3664400 2 2 1 2 2 2 2 2 2 2 2 1045800000 823510000 222340000 10594 702 9842 55787;55788;55789;55790;55791;55792 67592;67593;67594;67595;67596;67597 67594 6 KQPPVSPGTALVGSQKEPSEVPTPK Unmodified 2557.3752 0.37516721 702 P17096;P17096-3 HMGA1 High mobility group protein HMG-I/HMG-Y yes no 0 0 0 2 By MS/MS By MS/MS 5.62 3.1 4 3 6 7 6 47.157 47.252 4;5;6 1.0004E-72 12774 20211116_3428_TMUAki_TMT10x_P_F1 243.88 236.77 102590000 178370000 1164900 201830000 190380000 234180000 129920000 200650000 203750000 166250000 162450000 95526000 166520000 9917000 204730000 181040000 235820000 137230000 204670000 202580000 163790000 157990000 24 24 14 24 24 24 24 24 24 24 24 60028000 102740000 853320 119790000 161940000 205660000 111040000 119860000 117100000 96997000 94454000 55895000 95933000 6686400 122290000 154010000 202290000 115480000 125510000 118060000 95674000 91817000 14 14 8 14 14 14 14 14 14 14 14 42565000 75626000 311570 82036000 28443000 28516000 18884000 80789000 86649000 69253000 67996000 39632000 70592000 3230600 82437000 27025000 33526000 21752000 79157000 84523000 68112000 66171000 10 10 6 10 10 10 10 10 10 10 10 41068000000 26008000000 15059000000 10595 702 9843 55793;55794;55795;55796;55797;55798;55799;55800;55801;55802;55803;55804;55805 67598;67599;67600;67601;67602;67603;67604;67605;67606;67607;67608;67609;67610;67611;67612;67613;67614;67615;67616;67617;67618;67619;67620;67621 67598 24 KQQISLATQMVR Oxidation (M) 1417.7711 0.77113304 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 1 1 By MS/MS By matching 3 0.816 1 1 1 2 1 35.731 35.686 3 0.00012917 9813 20211116_3429_TMUAki_TMT10x_P_F2 90.759 75.344 863010 1302500 1151 1314400 2634500 1915300 938170 1014100 1363500 980250 1033700 803320 1215400 67063 1349000 2481500 1893900 1053500 1075500 1356800 958750 1007300 2 2 1 2 2 2 2 2 2 2 2 863010 1302500 1151 1314400 2634500 1915300 938170 1014100 1363500 980250 1033700 803320 1215400 67063 1349000 2481500 1893900 1053500 1075500 1356800 958750 1007300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 51017000 45507000 5510000 10596 1079 9844 55806;55807;55808 67622;67623 67622 1406 2 KQQISLATQMVR Unmodified 1401.7762 0.77621842 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 43.377 43.312 3 4.6843E-06 13243 20211116_3430_TMUAki_TMT10x_P_F3 112.42 75.998 4413600 6425600 33618 8097000 8682900 7105700 5063800 3711000 3805800 3461600 5228700 4109600 6002000 437390 8127300 8235400 7223700 5286700 3937000 3977300 3391100 4999900 3 3 2 3 3 3 3 3 3 3 3 3361900 4776700 6215.8 6197400 7820000 6449200 4255600 2789200 2841600 2647000 3866200 3130200 4462500 327310 6225800 7407700 6472300 4459300 3016300 2989100 2591100 3697900 2 2 1 2 2 2 2 2 2 2 2 1051600 1648900 27403 1899500 862930 656490 808140 921790 964210 814650 1362500 979390 1539500 110080 1901600 827700 751430 827430 920620 988220 800040 1302000 1 1 1 1 1 1 1 1 1 1 1 299880000 272640000 27245000 10597 1079 9844 55809;55810;55811;55812 67624;67625;67626;67627 67624 4 KQSLGELIGTLNAAK Unmodified 1541.8777 0.8777066 1271 P60174;P60174-1 TPI1 Triosephosphate isomerase yes no 0 0 0 1 By MS/MS By MS/MS 3 0.935 1 4 5 6 8 8 66.961 66.773 2;3;4 7.2865E-59 24103 20211116_3441_TMUAki_TMT10x_S_F3 280.23 252.49 167060000 270890000 1254100 281610000 205400000 275430000 181550000 195660000 166520000 212470000 205730000 155550000 252810000 14351000 286440000 196350000 279180000 184930000 203470000 171460000 206820000 197250000 22 22 12 22 22 22 22 22 22 22 22 91659000 146890000 302150 152390000 123560000 204330000 106720000 108980000 87499000 117070000 109020000 85339000 137080000 7542700 155850000 118020000 202810000 108530000 115860000 90620000 114000000 104500000 12 12 7 12 12 12 12 12 12 12 12 75403000 124000000 951960 129220000 81843000 71105000 74829000 86682000 79024000 95404000 96706000 70211000 115730000 6807900 130590000 78329000 76372000 76399000 87607000 80838000 92817000 92742000 10 10 5 10 10 10 10 10 10 10 10 35335000000 20624000000 14711000000 10598 1271 9845 55813;55814;55815;55816;55817;55818;55819;55820;55821;55822;55823;55824;55825;55826;55827;55828 67628;67629;67630;67631;67632;67633;67634;67635;67636;67637;67638;67639;67640;67641;67642;67643;67644;67645;67646;67647;67648;67649;67650;67651 67644 24 KQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFAR Unmodified 3714.9291 0.92909683 1271 P60174;P60174-1 TPI1 Triosephosphate isomerase yes no 0 0 0 2 By MS/MS By matching 2.67 0.471 1 2 2 1 78.27 78.201 5 0.063174 27042 20211116_3429_TMUAki_TMT10x_P_F2 34.38 25.159 2773000 4668400 139340 4885000 2431600 5301200 3140400 2789900 2778400 2545300 3425900 2583000 4356900 354990 4974400 2357800 5318400 3137200 2956000 2865400 2496000 3284800 1 1 1 1 1 1 1 1 1 1 1 2773000 4668400 139340 4885000 2431600 5301200 3140400 2789900 2778400 2545300 3425900 2583000 4356900 354990 4974400 2357800 5318400 3137200 2956000 2865400 2496000 3284800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2573900000 1901500000 672380000 10599 1271 9846 55829;55830;55831 67652 67652 1 KQSNPLLIHVDTK Unmodified 1491.8409 0.84092717 1070 P48147 PREP Prolyl endopeptidase yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 41.616 41.793 4 7.0336E-06 10275 20211116_3447_TMUAki_TMT10x_S_F8 101.89 77.094 1963800 2922100 53471 3584800 3904300 3686100 2267900 2695900 2558700 2129000 2716800 1828900 2729100 239820 3611800 3705700 3726700 2395000 2774000 2595900 2102700 2615900 3 3 3 3 3 3 3 3 3 3 3 1481700 2174900 44126 2651500 3428300 3284600 1820500 1998200 1905400 1545700 2050500 1380000 2031200 191230 2680800 3249500 3278200 1933300 2083000 1939900 1528300 1973500 2 2 2 2 2 2 2 2 2 2 2 482080 747210 9345.7 933290 475920 401490 447360 697720 653280 583280 666370 448930 697920 48591 931010 456180 448470 461640 691020 656060 574380 642420 1 1 1 1 1 1 1 1 1 1 1 141940000 69974000 71961000 10600 1070 9847 55832;55833 67653;67654;67655 67655 3 KQTALVELLK Unmodified 1141.7071 0.70705945 38 CON__P02769 yes yes 0 0 0 1 By MS/MS By MS/MS 3.25 2.77 1 2 1 1 3 57.889 57.69 3 3.8342E-09 19263 20211116_3439_TMUAki_TMT10x_S_F1 136.7 82.294 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10601 38 9848 55834;55835;55836;55837 67656;67657;67658;67659 67657 4 KQTIDNSQGAYQEAFDISKK Unmodified 2270.1179 0.11788989 825 P27348 YWHAQ 14-3-3 protein theta yes yes 0 0 0 2 By MS/MS 8 0 1 1 51.601 51.502 4 1.5672E-12 14208 20211116_3447_TMUAki_TMT10x_S_F8 126.02 113.22 9333900 15558000 0 16100000 6516200 7717300 5927900 15114000 15584000 13618000 14254000 8690400 14519000 688800 16261000 6230300 8545200 6342600 14949000 15384000 13362000 13791000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9333900 15558000 0 16100000 6516200 7717300 5927900 15114000 15584000 13618000 14254000 8690400 14519000 688800 16261000 6230300 8545200 6342600 14949000 15384000 13362000 13791000 1 1 0 1 1 1 1 1 1 1 1 842870000 0 842870000 10602 825 9849 55838 67660 67660 1 KQVVNIPSFIVR Unmodified 1398.8347 0.83471958 1054 P46781 RPS9 40S ribosomal protein S9 yes yes 0 0 0 1 By MS/MS By MS/MS 4.71 1.16 2 3 2 3 4 58.656 58.639 3 1.4288E-22 16925 20211116_3434_TMUAki_TMT10x_P_F6 210.64 175.34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10603 1054 9850 55839;55840;55841;55842;55843;55844;55845 67661;67662;67663;67664;67665;67666;67667 67663 7 KRAEFTVETR Unmodified 1235.6622 0.66223452 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 2 By MS/MS By MS/MS 6 1.58 1 1 1 1 2 2 30.014 30.195 4 0.00087396 6732 20211116_3433_TMUAki_TMT10x_P_F5 95.094 74.431 1037800 1534100 18389 1371600 942040 1239400 978850 693370 691200 760620 1088600 966380 1430900 96784 1408800 904980 1258500 982060 734540 729860 740090 1037800 3 3 2 3 3 3 3 3 3 3 3 842760 1227600 15255 1057900 740120 1105200 754150 598250 603150 641020 889040 784800 1144800 82650 1092000 710940 1111600 759550 635130 630360 624290 848770 1 1 1 1 1 1 1 1 1 1 1 195030 306540 3134 313660 201920 134180 224710 95114 88046 119600 199520 181570 286060 14134 316800 194040 146890 222510 99410 99507 115800 189010 2 2 1 2 2 2 2 2 2 2 2 47427000 45371000 2056700 10604 755 9851 55846;55847;55848;55849 67668;67669 67668 2 KREDAEHNLVLFR Unmodified 1625.8638 0.86378788 995 P41219;P41219-2 PRPH Peripherin yes no 0 0 0 2 By matching By MS/MS 5 0 2 1 1 36.042 36.116 5 3.0481E-05 7977 20211116_3444_TMUAki_TMT10x_S_F5 100.55 87.148 199240 309220 11553 383080 157090 158750 169640 239040 275400 244240 289780 185600 288820 26695 382240 151640 177360 174690 239140 276060 238330 279100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 199240 309220 11553 383080 157090 158750 169640 239040 275400 244240 289780 185600 288820 26695 382240 151640 177360 174690 239140 276060 238330 279100 1 1 1 1 1 1 1 1 1 1 1 159570000 113780000 45788000 10605 995 9852 55850;55851 67670 67670 1 KREELSNVLAAMR Oxidation (M) 1531.8141 0.81406049 3288 Q9Y3U8 RPL36 60S ribosomal protein L36 yes yes 0 0 1 2 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 36.698 36.711 4 0.002057 8590 20211116_3428_TMUAki_TMT10x_P_F1 68.171 55.293 944560 1638800 332.16 1652500 1704600 1998800 1313600 1544000 1528400 1127900 1469700 879310 1529200 67912 1690000 1623200 2004700 1359600 1580300 1543400 1118700 1419600 2 2 1 2 2 2 2 2 2 2 2 379020 683130 0 631080 1166700 1555800 755560 949440 960860 607420 753480 352730 637240 21103 661310 1107000 1514200 794250 985690 961170 607330 733270 1 1 0 1 1 1 1 1 1 1 1 565540 955690 332.16 1021400 537850 443060 558070 594520 567520 520440 716260 526580 892000 46809 1028700 516250 490440 565310 594610 582210 511340 686350 1 1 1 1 1 1 1 1 1 1 1 63237000 40447000 22790000 10606 3288 9853 55852;55853;55854 67671;67672 67671 3258 2 KREELSNVLAAMR Unmodified 1515.8191 0.81914587 3288 Q9Y3U8 RPL36 60S ribosomal protein L36 yes yes 0 0 0 2 By MS/MS By MS/MS 2.57 2.26 2 4 1 4 3 48.482 48.351 3;4 2.1222E-26 13274 20211116_3428_TMUAki_TMT10x_P_F1 237.48 212.26 23170000 38172000 218700 46975000 41646000 38207000 30247000 21180000 17625000 19034000 30202000 21575000 35651000 2335200 47170000 39655000 39081000 30886000 22330000 18929000 18678000 28745000 11 11 8 11 11 11 11 11 11 11 11 16750000 26748000 216740 33184000 36578000 34258000 25804000 15600000 13469000 13942000 22093000 15597000 24983000 1858800 33415000 34814000 34414000 26356000 16753000 14549000 13684000 21046000 8 8 7 8 8 8 8 8 8 8 8 6420200 11423000 1959.9 13791000 5068100 3949700 4443300 5579700 4155500 5093000 8108400 5977600 10668000 476360 13755000 4841400 4667300 4530800 5576200 4380400 4994100 7699500 3 3 1 3 3 3 3 3 3 3 3 3919700000 2689000000 1230700000 10607 3288 9853 55855;55856;55857;55858;55859;55860;55861 67673;67674;67675;67676;67677;67678;67679;67680;67681;67682;67683 67673 11 KREGELTVAQGR Unmodified 1342.7317 0.73171107 1505 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 2 By MS/MS 4.5 0.5 1 1 2 28.202 28.19 3 0.0058591 6017 20211116_3433_TMUAki_TMT10x_P_F5 68.42 54.456 237480 389210 7946.7 382110 448010 490210 330840 273040 309230 265870 379620 221170 363140 30043 391930 427110 487850 341040 288360 318030 259960 364020 1 1 1 1 1 1 1 1 1 1 1 237480 389210 7946.7 382110 448010 490210 330840 273040 309230 265870 379620 221170 363140 30043 391930 427110 487850 341040 288360 318030 259960 364020 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16068000 16068000 0 10608 1505 9854 55862;55863 67684 67684 1 KRGAPPSSNIEDFHGLLPK Unmodified 2062.096 0.095972656 1026 P43243 MATR3 Matrin-3 yes yes 0 0 0 2 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 45.799 45.663 5 2.4569E-31 12445 20211116_3440_TMUAki_TMT10x_S_F2 185.96 168.1 8654400 12350000 20819 16160000 14223000 15123000 9257000 11561000 11253000 10123000 11194000 8057500 11539000 721480 16202000 13508000 15390000 9711200 11891000 11359000 9945800 10800000 5 5 4 5 5 5 5 5 5 5 5 5889600 8065200 16378 11054000 11733000 13057000 7498500 7977900 7434200 6866300 7634500 5483100 7536900 491970 11095000 11139000 13064000 7825500 8334500 7573000 6751800 7358500 3 3 2 3 3 3 3 3 3 3 3 2764800 4285200 4441.1 5106800 2490000 2066000 1758400 3583200 3819000 3256600 3559400 2574400 4001600 229510 5106300 2369400 2326300 1885700 3556800 3785800 3194100 3441600 2 2 2 2 2 2 2 2 2 2 2 5490300000 3293500000 2196800000 10609 1026 9855 55864;55865;55866;55867 67685;67686;67687;67688;67689 67689 5 KRGFEVVYMTEPIDEYCVQQLK Oxidation (M) 2747.3299 0.32987327 553 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 1 2 By MS/MS By MS/MS 6.32 1.66 1 1 2 4 7 4 10 9 57.825 58.1 3;4;5 2.8799E-14 17540 20211116_3434_TMUAki_TMT10x_P_F6 131.09 105.29 180490000 276210000 460870 251720000 202510000 272430000 190100000 220180000 211000000 204100000 227620000 168040000 257640000 11383000 258840000 193790000 275090000 194120000 226020000 214330000 200000000 219070000 33 33 8 33 33 33 33 33 33 33 33 99655000 146900000 224690 134300000 98242000 190190000 105260000 120410000 116400000 116280000 127560000 92782000 137020000 6559400 138730000 94321000 188740000 106750000 125820000 118330000 113730000 122710000 16 16 2 16 16 16 16 16 16 16 16 80830000 129310000 236170 117420000 104270000 82246000 84837000 99772000 94595000 87826000 100060000 75258000 120620000 4823600 120100000 99470000 86350000 87372000 100200000 96002000 86268000 96357000 17 17 6 17 17 17 17 17 17 17 17 66196000000 39505000000 26691000000 10610 553 9856 55868;55869;55870;55871;55872;55873;55874;55875;55876;55877;55878;55879;55880;55881;55882;55883;55884;55885;55886 67690;67691;67692;67693;67694;67695;67696;67697;67698;67699;67700;67701;67702;67703;67704;67705;67706;67707;67708;67709;67710;67711;67712;67713;67714;67715;67716;67717;67718;67719;67720;67721;67722 67694 508 33 KRGFEVVYMTEPIDEYCVQQLK Unmodified 2731.335 0.33495865 553 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 2 By MS/MS By MS/MS 6.62 0.857 1 2 4 1 5 3 65.639 65.872 3;4;5 2.0878E-14 22312 20211116_3446_TMUAki_TMT10x_S_F7 135.49 122.3 25056000 40167000 255330 40119000 27798000 25935000 27497000 13428000 9834200 14415000 27972000 23332000 37480000 1274100 40720000 26659000 27015000 27360000 14313000 11421000 14038000 26422000 7 7 3 7 7 7 7 7 7 7 7 15757000 23784000 120730 23722000 15058000 16757000 17620000 7368300 4194900 7296900 17278000 14672000 22193000 463380 24101000 14509000 17289000 17323000 7963200 5319300 7129500 16262000 3 3 1 3 3 3 3 3 3 3 3 9299800 16383000 134590 16397000 12739000 9178500 9877000 6059500 5639300 7118200 10694000 8659800 15287000 810690 16619000 12150000 9725600 10037000 6350000 6101800 6908400 10159000 4 4 2 4 4 4 4 4 4 4 4 17417000000 11788000000 5628600000 10611 553 9856 55887;55888;55889;55890;55891;55892;55893;55894 67723;67724;67725;67726;67727;67728;67729;67730 67730 8 KRGFGFVTFDDHDPVDK Unmodified 1978.9537 0.95372509 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 2 By MS/MS By MS/MS 7 0 2 1 1 49.068 49.621 5 2.9387E-15 15135 20211116_3435_TMUAki_TMT10x_P_F7 147.09 131.84 9454300 13608000 0 19571000 16443000 11529000 7661500 11903000 11222000 10380000 13118000 8802200 12720000 793850 19424000 15540000 12250000 8340800 12037000 11328000 10200000 12596000 2 2 0 2 2 2 2 2 2 2 2 4888500 6708000 0 8897500 7858800 9025600 4855700 5814100 5403000 4753000 5982100 4551600 6267400 435080 8924200 7459100 9114600 5099300 6041700 5493200 4685700 5752800 1 1 0 1 1 1 1 1 1 1 1 4565800 6899800 0 10673000 8584400 2503600 2805800 6088500 5819100 5626800 7136300 4250600 6452300 358780 10500000 8080900 3135000 3241500 5995600 5834800 5514500 6843300 1 1 0 1 1 1 1 1 1 1 1 3662100000 1967100000 1695000000 10612 772 9857 55895;55896 67731;67732 67731 2 KRGFGFVYFQNHDAADK Unmodified 1998.97 0.97004386 1601 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 0 0 0 2 By MS/MS By MS/MS 3.44 2.5 1 4 2 2 4 5 44.887 44.776 4;5 2.9068E-16 13392 20211116_3429_TMUAki_TMT10x_P_F2 159.13 142.44 25707000 43842000 342340 51907000 44433000 47628000 28386000 37065000 31135000 30139000 32918000 23938000 40939000 2684400 52320000 42220000 48547000 29717000 38010000 31617000 29721000 31699000 10 10 7 10 10 10 10 10 10 10 10 16284000 27912000 242410 33552000 32178000 40520000 21747000 23887000 19409000 19038000 19976000 15164000 26066000 1790400 33934000 30606000 40475000 22532000 24981000 19868000 18793000 19253000 5 5 4 5 5 5 5 5 5 5 5 9423000 15930000 99924 18355000 12255000 7108600 6638500 13177000 11726000 11101000 12942000 8774300 14874000 893980 18385000 11614000 8071800 7184900 13029000 11749000 10927000 12447000 5 5 3 5 5 5 5 5 5 5 5 5410800000 3652800000 1758000000 10613 1601 9858 55897;55898;55899;55900;55901;55902;55903;55904;55905 67733;67734;67735;67736;67737;67738;67739;67740;67741 67734 9 KRGHVFEESQVAGTPMFVVK Oxidation (M) 2261.1627 0.16267201 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 1 2 By MS/MS By MS/MS 4.75 3.27 2 2 4 3 5 43.382 43.407 4;5 5.3327E-09 11576 20211116_3440_TMUAki_TMT10x_S_F2 109.72 92.639 15802000 27084000 330770 33319000 35615000 37042000 22734000 25162000 29144000 18846000 26309000 14713000 25296000 1607100 33607000 33826000 37239000 23932000 25994000 29268000 18666000 25467000 8 8 6 8 8 8 8 8 8 8 8 10492000 18032000 253710 22182000 30344000 32747000 18556000 16547000 19211000 11946000 17344000 9768400 16841000 1112500 22494000 28797000 32345000 19459000 17504000 19449000 11856000 16789000 3 3 2 3 3 3 3 3 3 3 3 5310100 9051900 77057 11137000 5270500 4294900 4177600 8615100 9932700 6899900 8965100 4944700 8454200 494610 11112000 5029700 4894500 4472800 8489800 9818600 6809500 8678300 5 5 4 5 5 5 5 5 5 5 5 1641700000 959460000 682210000 10614 653 9859 55906;55907;55908;55909;55910;55911;55912;55913 67742;67743;67744;67745;67746;67747;67748;67749 67747 707 8 KRGWDENVYYTVPLVR Unmodified 1994.0374 0.037395144 2618 Q9BPW8 NIPSNAP1 Protein NipSnap homolog 1 yes yes 0 0 0 2 By MS/MS 2 0 1 1 53.334 53.084 4 9.7612E-08 16838 20211116_3429_TMUAki_TMT10x_P_F2 118.19 99.368 1730200 2553300 15236 3008000 3270300 4104200 2299800 2010800 2003500 1987300 2553800 1611100 2384200 179210 3052900 3112200 4066400 2374400 2149400 2070700 1941900 2446500 1 1 1 1 1 1 1 1 1 1 1 1730200 2553300 15236 3008000 3270300 4104200 2299800 2010800 2003500 1987300 2553800 1611100 2384200 179210 3052900 3112200 4066400 2374400 2149400 2070700 1941900 2446500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 253610000 253610000 0 10615 2618 9860 55914 67750 67750 1 KRHEMPPHIYAITDTAYR Oxidation (M) 2214.1004 0.10040611 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 1 2 By MS/MS By MS/MS 1 0 2 1 1 33.769 33.763 5 6.8244E-05 7401 20211116_3428_TMUAki_TMT10x_P_F1 80.238 64.983 441200 781120 13220 870510 659780 569790 519620 585550 744120 503920 668550 410900 729200 51960 877250 629900 599370 541350 592110 744510 495520 647260 3 3 3 3 3 3 3 3 3 3 3 133220 241130 2202.7 281370 368060 300540 221060 168760 273090 134220 186760 124050 225150 16386 284490 349350 302030 233520 177200 272480 132510 182830 1 1 1 1 1 1 1 1 1 1 1 307980 539980 11017 589140 291720 269250 298570 416800 471030 369710 481790 286850 504050 35574 592770 280550 297340 307830 414910 472030 363020 464430 2 2 2 2 2 2 2 2 2 2 2 46401000 26553000 19848000 10616 934 9861 55915;55916 67751;67752;67753 67751 1172 3 KRLEEPEEPK Unmodified 1253.6616 0.66156582 360 O75822;O75822-2 EIF3J Eukaryotic translation initiation factor 3 subunit J yes no 0 0 0 2 By MS/MS 4 0 1 1 31.091 31.125 4 0.0016784 6862 20211116_3431_TMUAki_TMT10x_P_F4 82.379 57.588 261950 407440 2419.1 401840 493600 484740 287080 229920 314430 254410 358020 243920 380160 27217 411570 468240 482980 302840 247360 320230 247460 344020 1 1 1 1 1 1 1 1 1 1 1 261950 407440 2419.1 401840 493600 484740 287080 229920 314430 254410 358020 243920 380160 27217 411570 468240 482980 302840 247360 320230 247460 344020 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24284000 24284000 0 10617 360 9862 55917 67754 67754 1 KRNEPNSYAISFR Unmodified 1580.8059 0.80593865 728 P19174-2;P19174 PLCG1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 yes no 0 0 0 2 By MS/MS By matching 1.5 0.5 2 2 3 1 34.169 34.055 3;4 2.2847E-11 9112 20211116_3429_TMUAki_TMT10x_P_F2 144.68 97.057 960900 1486600 4055.8 1710200 2472300 2121400 1212200 1142800 1217100 989050 1388800 894650 1388000 95610 1735000 2338500 2113800 1295600 1206700 1244000 972290 1334400 3 3 1 3 3 3 3 3 3 3 3 960900 1486600 4055.8 1710200 2472300 2121400 1212200 1142800 1217100 989050 1388800 894650 1388000 95610 1735000 2338500 2113800 1295600 1206700 1244000 972290 1334400 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 216100000 202580000 13524000 10618 728 9863 55918;55919;55920;55921 67755;67756;67757 67756 3 KRPAPQQIQQVQQQAVQNR Unmodified 2244.2199 0.21994439 2475 Q96GM5;Q96GM5-2 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes no 0 0 0 2 By MS/MS By MS/MS 3.25 0.829 1 1 2 3 1 32.226 32.124 3;4 3.9232E-133 7279 20211116_3431_TMUAki_TMT10x_P_F4 375.26 362.55 661240 1089900 11281 1353800 2830200 2097100 932120 1109700 1377100 1074900 1305500 615760 1017900 46643 1373500 2666700 2068400 1058500 1177100 1378900 1051300 1261600 4 4 2 4 4 4 4 4 4 4 4 447420 749150 8275.4 927320 2626500 1898100 722040 873310 1124000 850770 973510 416660 699700 31092 947950 2471000 1850700 844420 938970 1120500 831840 943770 2 2 1 2 2 2 2 2 2 2 2 213820 340710 3005.4 426440 203740 199050 210080 236390 253100 224170 331970 199110 318240 15551 425580 195690 217640 214090 238100 258400 219440 317800 2 2 1 2 2 2 2 2 2 2 2 646460000 596540000 49923000 10619 2475 9864 55922;55923;55924;55925 67758;67759;67760;67761 67759 4 KRPLIVFDGSSTSTSIK Unmodified 1835.0153 0.015262719 2690 Q9BVC5;Q9BVC5-2 C2orf49 Ashwin yes no 0 0 0 2 By MS/MS 4 0 1 1 47.321 47.457 4 4.6342E-06 13368 20211116_3431_TMUAki_TMT10x_P_F4 100.43 88.261 3182700 5284000 156630 5555300 6883400 8061200 4679600 5137600 4898300 4173400 4628400 2964600 4931600 461680 5685600 6554200 7992000 4868700 5342200 4964100 4115700 4473200 1 1 1 1 1 1 1 1 1 1 1 3182700 5284000 156630 5555300 6883400 8061200 4679600 5137600 4898300 4173400 4628400 2964600 4931600 461680 5685600 6554200 7992000 4868700 5342200 4964100 4115700 4473200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 346490000 346490000 0 10620 2690 9865 55926 67762 67762 1 KRPNNLVIGR Unmodified 1165.7044 0.70437411 2823 Q9H7B2 RPF2 Ribosome production factor 2 homolog yes yes 0 0 0 2 By MS/MS 4.5 0.5 1 1 2 29.918 29.904 4 5.8966E-05 6661 20211116_3433_TMUAki_TMT10x_P_F5 128.27 94.309 416010 659470 0 625930 664040 774990 474970 452610 410520 403970 555070 387310 615230 33106 643150 631650 773070 489670 474990 425580 396550 530980 2 2 0 2 2 2 2 2 2 2 2 416010 659470 0 625930 664040 774990 474970 452610 410520 403970 555070 387310 615230 33106 643150 631650 773070 489670 474990 425580 396550 530980 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 40558000 40558000 0 10621 2823 9866 55927;55928 67763;67764 67764 2 KRTELFIAAEGIHTGQFVYCGK Unmodified 2524.2897 0.28966344 1384 P62917 RPL8 60S ribosomal protein L8 yes yes 0 0 0 2 By MS/MS By MS/MS 2.5 0.5 3 3 4 2 57.526 57.26 4;5 2.5775E-10 19025 20211116_3430_TMUAki_TMT10x_P_F3 109.37 57.34 38299000 62979000 591210 64415000 46408000 63783000 41552000 43828000 39023000 41738000 46156000 35663000 58772000 3608000 65603000 44397000 64568000 42324000 45506000 40063000 40850000 44304000 9 9 4 9 9 9 9 9 9 9 9 25149000 41793000 135690 43017000 32396000 53171000 29242000 29040000 26387000 27932000 30060000 23415000 39002000 2081100 43950000 30977000 52999000 29738000 30711000 27099000 27325000 28884000 7 7 2 7 7 7 7 7 7 7 7 13150000 21186000 455520 21398000 14012000 10611000 12310000 14788000 12636000 13806000 16096000 12248000 19770000 1526900 21653000 13420000 11569000 12586000 14795000 12964000 13524000 15420000 2 2 2 2 2 2 2 2 2 2 2 7166300000 4936400000 2230000000 10622 1384 9867 55929;55930;55931;55932;55933;55934 67765;67766;67767;67768;67769;67770;67771;67772;67773 67768 9 KRVEDAYILTCNVSLEYEK Unmodified 2329.1624 0.16239724 982 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 2 By MS/MS By MS/MS 7 0.707 1 2 1 3 1 57.173 57.547 4 2.0032E-17 18871 20211116_3446_TMUAki_TMT10x_S_F7 149.34 133.75 29372000 47750000 272840 47039000 43083000 54138000 38304000 48563000 52155000 46920000 41672000 27348000 44554000 2652000 48144000 41192000 54589000 39532000 49607000 52081000 45892000 40524000 8 8 5 8 8 8 8 8 8 8 8 20523000 33417000 127860 32588000 34817000 47816000 30947000 31664000 34088000 31328000 28371000 19108000 31178000 1791400 33532000 33280000 47410000 31691000 32999000 34338000 30610000 27545000 6 6 3 6 6 6 6 6 6 6 6 8849200 14334000 144980 14451000 8265800 6321500 7357200 16899000 18067000 15592000 13302000 8240500 13376000 860610 14612000 7911600 7179000 7841800 16609000 17742000 15282000 12979000 2 2 2 2 2 2 2 2 2 2 2 6169600000 4749600000 1420100000 10623 982 9868 55935;55936;55937;55938 67774;67775;67776;67777;67778;67779;67780;67781 67781 8 KRYDQDLCYTDILFTEQER Unmodified 2492.1642 0.16418816 1757 Q15029;Q15029-2;Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 2 By MS/MS 5.5 0.5 1 1 2 59.688 59.752 4 0.071265 17511 20211116_3444_TMUAki_TMT10x_S_F5 38.991 25.159 6485600 12200000 35210 9878600 8194300 6246900 6479700 9014500 8391900 9048900 9834100 6039000 11375000 594440 10187000 7816100 6650200 6721500 9026700 8504800 8836200 9442000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6485600 12200000 35210 9878600 8194300 6246900 6479700 9014500 8391900 9048900 9834100 6039000 11375000 594440 10187000 7816100 6650200 6721500 9026700 8504800 8836200 9442000 1 1 1 1 1 1 1 1 1 1 1 807150000 0 807150000 10624 1757 9869 55939;55940 67782 67782 1 KSADTLWDIQK Unmodified 1303.6772 0.67721588 531 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 1 By MS/MS 7 0 1 1 52.296 52.988 3 1.7059E-06 16526 20211116_3435_TMUAki_TMT10x_P_F7 124.12 84.458 4719000 7364200 98739 10550000 26415000 14894000 11749000 4506200 4950200 4316800 8282600 4394600 6883500 787130 10602000 24965000 14671000 12474000 5100100 5451700 4223800 7886700 1 1 1 1 1 1 1 1 1 1 1 4719000 7364200 98739 10550000 26415000 14894000 11749000 4506200 4950200 4316800 8282600 4394600 6883500 787130 10602000 24965000 14671000 12474000 5100100 5451700 4223800 7886700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1080500000 1080500000 0 10625 531 9870 55941 67783 67783 1 KSAEFLLHMLK Oxidation (M) 1331.7271 0.72714296 721 P18621;P18621-3;P18621-2 RPL17 60S ribosomal protein L17 yes no 0 0 1 1 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 52.009 51.869 4 0.0016936 16353 20211116_3429_TMUAki_TMT10x_P_F2 75.78 58.838 2953800 5190700 46905 4925100 7654700 9365800 4391400 8333800 8294600 5535700 5867300 2750600 4842500 350790 5109600 7260200 9244200 4745900 8441500 8181400 5521700 5735200 3 3 2 3 3 3 3 3 3 3 3 2144800 3852300 46905 3626300 6931500 8810200 3773800 6495700 6462400 4192000 4475400 1997300 3593700 288570 3792900 6569700 8603500 4076200 6652300 6386200 4189000 4378800 2 2 2 2 2 2 2 2 2 2 2 809010 1338500 0 1298900 723190 555620 617690 1838000 1832200 1343700 1391900 753240 1248800 62220 1316700 690540 640690 669660 1789300 1795200 1332700 1356300 1 1 0 1 1 1 1 1 1 1 1 1099300000 891100000 208250000 10626 721 9871 55942;55943;55944 67784;67785;67786 67784 827 3 KSAEFLLHMLK Unmodified 1315.7322 0.73222834 721 P18621;P18621-3;P18621-2 RPL17 60S ribosomal protein L17 yes no 0 0 0 1 By MS/MS 3 0 1 1 64.201 63.916 3 0.0056643 21767 20211116_3430_TMUAki_TMT10x_P_F3 66.262 41.471 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10627 721 9871 55945 67787 67787 1 KSALDEIMEIEEEK Oxidation (M) 1678.7971 0.7971326 297 O60870;O60870-2 KIN DNA/RNA-binding protein KIN17 yes no 0 0 1 1 By MS/MS 5 0 1 1 73.332 73.343 2 0.079254 23096 20211116_3444_TMUAki_TMT10x_S_F5 45.598 23.366 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10628 297 9872 55946 67788 67788 227 1 KSAPATGGVK Unmodified 914.51853 0.5185304 1421 P68431;Q71DI3;Q16695 HIST1H3A;HIST2H3A;HIST3H3 Histone H3.1;Histone H3.2;Histone H3.1t yes no 0 0 0 1 By MS/MS 1 0 1 1 29.368 29.448 3 0.0054935 7756 20211116_3439_TMUAki_TMT10x_S_F1 67.952 27.894 169410 308530 4343 240790 205260 253130 232130 184490 159780 156170 235450 157770 287640 18595 250610 197750 255570 231820 190200 168400 153690 224790 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 169410 308530 4343 240790 205260 253130 232130 184490 159780 156170 235450 157770 287640 18595 250610 197750 255570 231820 190200 168400 153690 224790 1 1 1 1 1 1 1 1 1 1 1 4395600 0 4395600 10629 1421 9873 55947 67789 67789 1 KSDGIYIINLK Unmodified 1262.7234 0.72343779 565 P08865 RPSA 40S ribosomal protein SA yes yes 0 0 0 1 By MS/MS By MS/MS 3.67 3.09 1 1 1 2 1 58.013 57.992 3 0.00063016 17233 20211116_3428_TMUAki_TMT10x_P_F1 81.709 49.647 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10630 565 9874 55948;55949;55950 67790;67791;67792 67790 3 KSDGIYIINLKR Unmodified 1418.8245 0.82454882 565 P08865 RPSA 40S ribosomal protein SA yes yes 0 0 0 2 By MS/MS 3.5 0.5 1 1 2 49.264 49.163 4 0.0034745 14454 20211116_3442_TMUAki_TMT10x_S_F4 71.558 58.357 8232400 13883000 175220 14696000 7752400 7677500 6895000 14810000 14429000 12223000 13272000 7666300 12957000 818350 14830000 7421100 8414500 7272000 14621000 14308000 12044000 12839000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8232400 13883000 175220 14696000 7752400 7677500 6895000 14810000 14429000 12223000 13272000 7666300 12957000 818350 14830000 7421100 8414500 7272000 14621000 14308000 12044000 12839000 2 2 1 2 2 2 2 2 2 2 2 754550000 0 754550000 10631 565 9875 55951;55952 67793;67794 67794 2 KSDGKIDVSIEAASGGK Unmodified 1660.8632 0.86317875 582 P09622;P09622-3;P09622-2 DLD Dihydrolipoyl dehydrogenase, mitochondrial yes no 0 0 0 2 By matching By MS/MS 7 0 2 1 1 43.274 43.789 4 3.1058E-07 13050 20211116_3446_TMUAki_TMT10x_S_F7 102.37 73.409 481150 738010 6883.1 814970 558240 388310 395310 485500 414680 364650 563130 448050 688930 47385 819590 531590 424090 410100 485100 426280 361120 538630 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 481150 738010 6883.1 814970 558240 388310 395310 485500 414680 364650 563130 448050 688930 47385 819590 531590 424090 410100 485100 426280 361120 538630 1 1 1 1 1 1 1 1 1 1 1 755940000 646760000 109180000 10632 582 9876 55953;55954 67795 67795 1 KSDIDEIVLVGGSTR Unmodified 1587.8468 0.84680041 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 1 By MS/MS By MS/MS 4.71 1.03 1 2 2 2 3 4 54.381 54.434 3 4.6026E-20 15294 20211116_3444_TMUAki_TMT10x_S_F5 177.66 157.35 71707000 115570000 1028800 130750000 96533000 114690000 78633000 95341000 103200000 94261000 98456000 66771000 107890000 6901300 132080000 92150000 117400000 81457000 97880000 103740000 92104000 95123000 15 15 12 15 15 15 15 15 15 15 15 36590000 58519000 409590 65022000 65490000 82641000 46978000 46405000 51621000 46787000 49316000 34070000 54629000 3469900 66137000 62332000 82288000 48763000 49021000 52231000 45679000 47645000 7 7 4 7 7 7 7 7 7 7 7 35117000 57047000 619210 65732000 31043000 32050000 31655000 48936000 51576000 47474000 49139000 32702000 53264000 3431500 65940000 29818000 35108000 32693000 48859000 51512000 46425000 47478000 8 8 8 8 8 8 8 8 8 8 8 13520000000 6894900000 6625000000 10633 614 9877 55955;55956;55957;55958;55959;55960;55961 67796;67797;67798;67799;67800;67801;67802;67803;67804;67805;67806;67807;67808;67809;67810 67807 15 KSDIYVCMISFAHNVAAQGK Oxidation (M) 2254.0875 0.087458159 1133 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 1 1 By MS/MS By MS/MS 2.75 0.829 2 1 1 1 3 53.157 52.968 4 6.6964E-07 15447 20211116_3440_TMUAki_TMT10x_S_F2 94.384 25.236 22769000 38329000 438340 42701000 31186000 39512000 22946000 31403000 28896000 30055000 31879000 21203000 35781000 2334200 43206000 29717000 40267000 23890000 32297000 29242000 29409000 30660000 6 6 5 6 6 6 6 6 6 6 6 8726000 14135000 128470 16064000 18546000 25852000 11947000 11537000 10805000 11069000 11854000 8125800 13197000 980720 16398000 17625000 25411000 12428000 12439000 11079000 10830000 11402000 2 2 2 2 2 2 2 2 2 2 2 14043000 24194000 309870 26637000 12640000 13660000 10999000 19865000 18091000 18986000 20025000 13077000 22584000 1353500 26807000 12092000 14856000 11462000 19858000 18163000 18579000 19258000 4 4 3 4 4 4 4 4 4 4 4 3389300000 1945600000 1443700000 10634 1133 9878 55962;55963;55964;55965 67811;67812;67813;67814;67815;67816 67814 1493 6 KSDIYVCMISFAHNVAAQGK Unmodified 2238.0925 0.092543537 1133 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 1 By MS/MS By MS/MS 6 0.577 1 4 1 2 4 73.301 73.301 3;4 3.199E-32 23355 20211116_3445_TMUAki_TMT10x_S_F6 188.38 175.72 51411000 81541000 690750 90697000 54491000 53489000 53970000 24274000 18273000 27292000 49639000 47874000 76120000 4921700 91323000 52275000 56130000 53667000 26245000 21264000 26530000 46914000 9 9 8 9 9 9 9 9 9 9 9 25161000 37910000 322830 44131000 25503000 32789000 28147000 9864800 6812700 10982000 22586000 23430000 35398000 2364200 44412000 24538000 33587000 27752000 11220000 8424000 10680000 21300000 4 4 3 4 4 4 4 4 4 4 4 26250000 43630000 367920 46567000 28988000 20700000 25824000 14409000 11460000 16310000 27052000 24444000 40723000 2557500 46911000 27738000 22542000 25915000 15025000 12840000 15851000 25614000 5 5 5 5 5 5 5 5 5 5 5 7746500000 3096000000 4650500000 10635 1133 9878 55966;55967;55968;55969;55970;55971 67817;67818;67819;67820;67821;67822;67823;67824;67825;67826 67824 10 KSDIYVCMISYAHNVAAQGK Oxidation (M) 2270.0824 0.082372781 884 P31150 GDI1 Rab GDP dissociation inhibitor alpha yes yes 0 0 1 1 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 47.7 47.593 4 1.0896E-12 13352 20211116_3440_TMUAki_TMT10x_S_F2 121.82 96.764 3444400 5708100 1366.9 6544400 4520000 6625500 3830800 5555900 5234500 5081100 5081100 3207000 5329400 292030 6618500 4316100 6720600 3965300 5688600 5258400 4982000 4906300 3 3 1 3 3 3 3 3 3 3 3 1498700 2443500 0 2797200 2834900 4673000 2393600 2381100 2139800 2140900 2164500 1395400 2281400 135230 2856700 2706600 4593300 2443100 2529400 2188800 2100800 2087300 1 1 0 1 1 1 1 1 1 1 1 1945700 3264600 1366.9 3747200 1685100 1952500 1437200 3174800 3094700 2940200 2916600 1811700 3048100 156800 3761800 1609400 2127300 1522100 3159200 3069500 2881200 2819000 2 2 1 2 2 2 2 2 2 2 2 1057000000 621830000 435140000 10636 884 9879 55972;55973;55974 67827;67828;67829 67829 1062 3 KSDIYVCMISYAHNVAAQGK Unmodified 2254.0875 0.087458159 884 P31150 GDI1 Rab GDP dissociation inhibitor alpha yes yes 0 0 0 1 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 61.991 61.983 4 3.0673E-09 21113 20211116_3431_TMUAki_TMT10x_P_F4 113.53 36.141 17065000 27432000 279770 29598000 32279000 21511000 17984000 18320000 12724000 14202000 20923000 15891000 25605000 1888600 29921000 30608000 22341000 18826000 18664000 13466000 14040000 19930000 3 3 3 3 3 3 3 3 3 3 3 8715000 13476000 127430 15178000 10899000 16091000 10743000 7814600 6337600 7193700 9752400 8115500 12581000 871890 15378000 10455000 16150000 10769000 8344400 6761400 7051300 9302100 2 2 2 2 2 2 2 2 2 2 2 8350000 13956000 152340 14420000 21380000 5420100 7240700 10505000 6386500 7008100 11171000 7775800 13024000 1016700 14543000 20154000 6191000 8057400 10319000 6704300 6988600 10628000 1 1 1 1 1 1 1 1 1 1 1 2532600000 1588900000 943700000 10637 884 9879 55975;55976;55977 67830;67831;67832 67831 3 KSDPVVSYRETVSEESNVLCLSK Unmodified 2625.2956 0.29559626 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 2 By MS/MS 6.5 0.5 1 1 2 57.865 58.262 4 4.3076E-07 18654 20211116_3435_TMUAki_TMT10x_P_F7 87.102 67.724 11288000 19008000 80541 21053000 16251000 21671000 12617000 10201000 9600100 8962200 13018000 10510000 17744000 941330 21342000 15487000 21781000 12894000 10913000 10020000 8804000 12452000 3 3 1 3 3 3 3 3 3 3 3 11288000 19008000 80541 21053000 16251000 21671000 12617000 10201000 9600100 8962200 13018000 10510000 17744000 941330 21342000 15487000 21781000 12894000 10913000 10020000 8804000 12452000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1802400000 1802400000 0 10638 653 9880 55978;55979 67833;67834;67835 67835 3 KSDSNPLTEILK Unmodified 1343.7296 0.72964538 2495 Q96I25 RBM17 Splicing factor 45 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0 3 2 1 57.232 57.754 3 7.8975E-05 19004 20211116_3446_TMUAki_TMT10x_S_F7 97.86 41.501 10801000 18327000 136940 23656000 6179000 10931000 6473700 15546000 8370400 12283000 13592000 10057000 17121000 914960 23566000 5937600 12025000 6609900 15476000 8617700 12130000 12950000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10801000 18327000 136940 23656000 6179000 10931000 6473700 15546000 8370400 12283000 13592000 10057000 17121000 914960 23566000 5937600 12025000 6609900 15476000 8617700 12130000 12950000 2 2 1 2 2 2 2 2 2 2 2 319180000 0 319180000 10639 2495 9881 55980;55981;55982 67836;67837;67838;67839 67839 4 KSDVEAIFSK Unmodified 1122.5921 0.59208927 545 P07910-2;P07910-4;P07910;O60812;B7ZW38;B2RXH8;P0DMR1 HNRNPC;HNRNPCL1;HNRNPCL3;HNRNPCL2;HNRNPCL4 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2;Heterogeneous nuclear ribonucleoprotein C-like 4 yes no 0 0 0 1 By MS/MS By MS/MS 7 0.707 1 2 1 2 2 53.517 53.958 3 2.3524E-05 15451 20211116_3445_TMUAki_TMT10x_S_F6 100.55 24.87 26917000 39952000 274190 57048000 52267000 38116000 31358000 29595000 28610000 27420000 38267000 25064000 37344000 2804300 56708000 49605000 39806000 32816000 30455000 29569000 26870000 36616000 3 3 2 3 3 3 3 3 3 3 3 12790000 19291000 52830 26249000 41226000 27738000 18381000 14338000 14367000 13407000 18305000 11909000 18027000 1470000 26310000 38956000 27865000 19715000 15226000 14931000 13133000 17536000 2 2 1 2 2 2 2 2 2 2 2 14127000 20661000 221360 30798000 11042000 10377000 12977000 15257000 14243000 14013000 19962000 13155000 19317000 1334300 30398000 10649000 11941000 13101000 15229000 14637000 13737000 19079000 1 1 1 1 1 1 1 1 1 1 1 4595200000 2827700000 1767500000 10640 545 9882 55983;55984;55985;55986 67840;67841;67842;67843 67842 4 KSDVETIFSK Unmodified 1152.6027 0.60265396 3158 Q9UKM9;Q9UKM9-2 RALY RNA-binding protein Raly yes no 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 50.676 51.098 3 1.56E-07 14274 20211116_3445_TMUAki_TMT10x_S_F6 112.51 67.249 11797000 17508000 69884 25532000 32865000 23266000 13747000 17867000 18952000 14115000 20076000 10984000 16367000 1336000 25446000 31036000 23720000 15105000 18326000 19093000 13940000 19331000 3 3 1 3 3 3 3 3 3 3 3 7129200 10412000 69884 15467000 28650000 20115000 10220000 11413000 11579000 8613100 12315000 6638500 9734500 955620 15491000 27012000 20010000 11372000 11959000 11747000 8527300 11857000 2 2 1 2 2 2 2 2 2 2 2 4667300 7095900 0 10065000 4214500 3150600 3527300 6454100 7372800 5501600 7760300 4345800 6632300 380380 9954900 4023800 3710400 3732900 6366900 7346100 5412400 7474000 1 1 0 1 1 1 1 1 1 1 1 1427000000 1061900000 365130000 10641 3158 9883 55987;55988;55989;55990 67844;67845;67846;67847 67846 4 KSEAEFRDYPPVLR Unmodified 1705.8788 0.87876924 2047 Q7KZ85 SUPT6H Transcription elongation factor SPT6 yes yes 0 0 0 2 By MS/MS 6 0 1 1 41.72 41.762 4 2.2415E-06 10192 20211116_3434_TMUAki_TMT10x_P_F6 115.38 96.552 1275600 2160600 10194 2584800 3235700 3466600 1961900 2181100 2225800 1766500 2005200 1187800 2017700 142710 2620100 3071200 3448200 2064800 2270100 2245000 1742300 1941100 1 1 1 1 1 1 1 1 1 1 1 1275600 2160600 10194 2584800 3235700 3466600 1961900 2181100 2225800 1766500 2005200 1187800 2017700 142710 2620100 3071200 3448200 2064800 2270100 2245000 1742300 1941100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 149410000 149410000 0 10642 2047 9884 55991 67848 67848 1 KSEEEIDFLR Unmodified 1264.6299 0.62993134 3224 Q9Y262;Q9Y262-2 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 0 0 0 1 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 47.094 47.029 3 2.8562E-05 14368 20211116_3429_TMUAki_TMT10x_P_F2 132.5 94.806 26546000 40814000 339250 52569000 52122000 50376000 30230000 35205000 35964000 29408000 36879000 24719000 38128000 2854200 52766000 49446000 51114000 31986000 36386000 36369000 28960000 35548000 8 8 6 8 8 8 8 8 8 8 8 17877000 27456000 259770 35122000 45557000 44714000 24328000 23723000 24226000 20095000 24671000 16647000 25648000 2096800 35432000 43163000 44488000 25784000 25071000 24666000 19775000 23785000 5 5 4 5 5 5 5 5 5 5 5 8668100 13359000 79483 17446000 6564700 5662300 5901700 11482000 11737000 9312800 12208000 8071400 12480000 757390 17333000 6282300 6626000 6201700 11316000 11702000 9184700 11762000 3 3 2 3 3 3 3 3 3 3 3 2292900000 1338500000 954420000 10643 3224 9885 55992;55993;55994;55995;55996;55997 67849;67850;67851;67852;67853;67854;67855;67856 67849 8 KSEIEYYAMLAK Oxidation (M) 1460.7221 0.72211717 1378 P62888 RPL30 60S ribosomal protein L30 yes yes 0 0 1 1 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 58.506 58.801 3 9.4672E-05 17222 20211116_3447_TMUAki_TMT10x_S_F8 93.958 80.213 84902000 148050000 1310300 151520000 128200000 165960000 98843000 129990000 128040000 118380000 122890000 79059000 138160000 8512100 154540000 122240000 167370000 102700000 133630000 128800000 116100000 118700000 9 9 5 9 9 9 9 9 9 9 9 44267000 75930000 808740 80095000 89870000 126440000 63890000 67225000 67963000 62761000 62877000 41222000 70867000 4949300 82109000 85560000 124620000 66291000 71205000 68782000 61480000 60812000 4 4 2 4 4 4 4 4 4 4 4 40635000 72121000 501530 71422000 38331000 39521000 34954000 62766000 60074000 55624000 60009000 37837000 67294000 3562800 72434000 36684000 42751000 36409000 62429000 60014000 54619000 57891000 5 5 3 5 5 5 5 5 5 5 5 9066600000 5971000000 3095600000 10644 1378 9886 55998;55999;56000;56001;56002 67857;67858;67859;67860;67861;67862;67863;67864;67865 67865 1850 9 KSEIEYYAMLAK Unmodified 1444.7272 0.72720254 1378 P62888 RPL30 60S ribosomal protein L30 yes yes 0 0 0 1 By MS/MS By MS/MS 7.12 0.781 2 3 3 5 3 62.315 62.654 2;3 1.1662E-11 19289 20211116_3436_TMUAki_TMT10x_P_F8 130.56 97.957 119300000 187560000 1315500 229060000 126080000 103310000 113420000 51094000 35650000 58974000 117470000 111090000 175170000 10874000 228860000 120630000 111830000 113300000 54820000 42574000 57272000 110790000 8 8 4 8 8 8 8 8 8 8 8 48867000 74537000 10838 88386000 66484000 66459000 60557000 21998000 17178000 24892000 45643000 45499000 69603000 4194800 88862000 63592000 68058000 60393000 24696000 20384000 24192000 43149000 4 4 1 4 4 4 4 4 4 4 4 70437000 113020000 1304700 140670000 59592000 36853000 52859000 29096000 18472000 34082000 71831000 65592000 105570000 6678900 140000000 57035000 43772000 52905000 30123000 22190000 33081000 67641000 4 4 3 4 4 4 4 4 4 4 4 7126800000 4250200000 2876600000 10645 1378 9886 56003;56004;56005;56006;56007;56008;56009;56010 67866;67867;67868;67869;67870;67871;67872;67873;67874;67875 67871 10 KSESEVEEAAAIIAQRPDNPR Unmodified 2309.1612 0.16115169 1858 Q16643;Q16643-3;Q16643-2 DBN1 Drebrin yes no 0 0 0 2 By MS/MS By MS/MS 4.47 1.2 1 2 5 3 4 9 6 52.198 52.26 3;4;5 2.1503E-75 15265 20211116_3431_TMUAki_TMT10x_P_F4 258.55 222.3 66121000 116870000 648920 123320000 90801000 115700000 74031000 98688000 92628000 86426000 94928000 61569000 109080000 5475600 125240000 86677000 117960000 76546000 100830000 93501000 84914000 91502000 21 21 14 21 21 21 21 21 21 21 21 34922000 59829000 378810 63027000 59699000 85180000 47970000 51522000 48130000 44428000 47771000 32518000 55839000 3163000 64403000 56965000 84653000 49277000 53870000 48944000 43683000 46094000 13 13 9 13 13 13 13 13 13 13 13 31200000 57045000 270120 60294000 31103000 30521000 26061000 47166000 44498000 41999000 47156000 29052000 53241000 2312600 60835000 29711000 33304000 27269000 46961000 44557000 41231000 45408000 8 8 5 8 8 8 8 8 8 8 8 27612000000 16651000000 10961000000 10646 1858 9887 56011;56012;56013;56014;56015;56016;56017;56018;56019;56020;56021;56022;56023;56024;56025 67876;67877;67878;67879;67880;67881;67882;67883;67884;67885;67886;67887;67888;67889;67890;67891;67892;67893;67894;67895;67896 67881 21 KSEYTQPTPIQCQGVPVALSGR Unmodified 2415.2216 0.22164345 2125 Q86XP3;Q86XP3-2 DDX42 ATP-dependent RNA helicase DDX42 yes no 0 0 0 1 By MS/MS By MS/MS 5.67 3.3 2 4 2 4 49.674 49.582 3;4 1.4812E-36 13444 20211116_3447_TMUAki_TMT10x_S_F8 198.84 190.65 8731000 15182000 64147 16835000 10266000 10413000 7996300 10863000 9955200 9601900 11908000 8129700 14173000 777500 16962000 9788200 11015000 8290300 10984000 10111000 9429700 11427000 7 7 3 7 7 7 7 7 7 7 7 2678000 4405000 21772 5000800 4715900 6354200 3660700 3332900 3028000 2962300 3436600 2493700 4112600 269720 5079800 4496600 6321800 3748800 3530100 3122700 2908400 3302500 2 2 1 2 2 2 2 2 2 2 2 6052900 10777000 42374 11835000 5549700 4059100 4335600 7529800 6927200 6639600 8471400 5636000 10060000 507780 11882000 5291600 4692700 4541500 7453900 6988600 6521300 8124300 5 5 2 5 5 5 5 5 5 5 5 1979800000 867850000 1111900000 10647 2125 9888 56026;56027;56028;56029;56030;56031 67897;67898;67899;67900;67901;67902;67903 67902 7 KSGKPGPFLLSGSR Unmodified 1429.8041 0.80414773 1025 P43034 PAFAH1B1 Platelet-activating factor acetylhydrolase IB subunit alpha yes yes 0 0 0 2 By MS/MS 6 0 1 1 38.929 38.935 4 0.037677 8997 20211116_3434_TMUAki_TMT10x_P_F6 48.053 24.448 1166600 1873800 0 2169700 3962000 3212600 1753000 1591900 1679900 1291700 1774800 1085900 1749600 95956 2208200 3740900 3172100 1891300 1691400 1715600 1273900 1709200 1 1 0 1 1 1 1 1 1 1 1 1166600 1873800 0 2169700 3962000 3212600 1753000 1591900 1679900 1291700 1774800 1085900 1749600 95956 2208200 3740900 3172100 1891300 1691400 1715600 1273900 1709200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 125410000 125410000 0 10648 1025 9889 56032 67904 67904 1 KSHKCLYK Carbamidomethyl (C) 1119.5859 0.58589846 3400 yes no 0 1 0 2 By MS/MS 5 0 1 1 32.293 32.233 3 0.1108 7586 20211116_3433_TMUAki_TMT10x_P_F5 51.727 27.384 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10649 3400 9890 56033 67905 67905 1 KSNAHYNLQNAFNLAEQHLGLTK Unmodified 2610.3303 0.3302827 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS 3 0 1 1 62.901 62.62 5 0.047468 21248 20211116_3430_TMUAki_TMT10x_P_F3 35.628 33.089 3373500 5528500 70131 6028800 4715200 7303300 4897400 4267500 3544100 3883000 4623700 3141600 5160600 363840 6134100 4530000 7293300 4916200 4480600 3703000 3808200 4426900 1 1 1 1 1 1 1 1 1 1 1 3373500 5528500 70131 6028800 4715200 7303300 4897400 4267500 3544100 3883000 4623700 3141600 5160600 363840 6134100 4530000 7293300 4916200 4480600 3703000 3808200 4426900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 318840000 318840000 0 10650 1475 9891 56034 67906 67906 1 KSNFAEALAAHK Unmodified 1285.6779 0.67788459 533 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 41.64 41.55 4 4.6601E-05 10604 20211116_3428_TMUAki_TMT10x_P_F1 98.803 84.897 1763800 2711500 28861 3303300 5537200 4600900 2584200 3005300 3423500 2501700 3050800 1642500 2532300 225980 3347600 5236900 4571200 2801700 3121000 3432900 2464000 2954500 3 3 3 3 3 3 3 3 3 3 3 1478500 2276800 21926 2789500 5268700 4332600 2306400 2583700 2931600 2145800 2586700 1376800 2126400 196100 2832600 4978700 4279300 2513700 2702100 2942800 2113700 2506000 2 2 2 2 2 2 2 2 2 2 2 285250 434720 6935.1 513860 268550 268260 277800 421570 491910 355890 464040 265650 405930 29879 514960 258150 291880 287930 418920 490070 350290 448500 1 1 1 1 1 1 1 1 1 1 1 304770000 265240000 39526000 10651 533 9892 56035;56036 67907;67908;67909 67908 3 KSPNELVDDLFK Unmodified 1403.7296 0.72964538 3203 Q9UNZ2;Q9UNZ2-5;Q9UNZ2-4 NSFL1C NSFL1 cofactor p47 yes no 0 0 0 1 By matching By MS/MS 6 0.707 1 2 1 1 3 68.19 68.255 3 0.00014989 21065 20211116_3444_TMUAki_TMT10x_S_F5 93.478 70.561 7051900 10762000 49554 11308000 7752800 6560300 7174800 6237600 6137800 6438300 8276200 6565700 10044000 559220 11427000 7416900 6968800 7275900 6364300 6365400 6279700 7917600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7051900 10762000 49554 11308000 7752800 6560300 7174800 6237600 6137800 6438300 8276200 6565700 10044000 559220 11427000 7416900 6968800 7275900 6364300 6365400 6279700 7917600 2 2 1 2 2 2 2 2 2 2 2 1151200000 316650000 834590000 10652 3203 9893 56037;56038;56039;56040 67910;67911 67910 2 KSPQELLCGASLISDR Unmodified 1772.9091 0.90908309 32 CON__P00735;P00734 F2 Prothrombin;Activation peptide fragment 1;Activation peptide fragment 2;Thrombin light chain;Thrombin heavy chain yes no 0 0 0 1 By MS/MS 8 0 1 1 59.334 59.511 3 1.3567E-05 17981 20211116_3436_TMUAki_TMT10x_P_F8 97.765 71.618 + 6055900 10589000 99892 11091000 9011400 15732000 9547500 10970000 10865000 11962000 10124000 5639400 9882900 636560 11349000 8660100 15633000 9697200 11423000 10969000 11642000 9789700 1 1 1 1 1 1 1 1 1 1 1 6055900 10589000 99892 11091000 9011400 15732000 9547500 10970000 10865000 11962000 10124000 5639400 9882900 636560 11349000 8660100 15633000 9697200 11423000 10969000 11642000 9789700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 598330000 598330000 0 10653 32 9894 56041 67912 67912 1 KSQIFSTASDNQPTVTIK Unmodified 1964.0215 0.021470309 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 1 By MS/MS By MS/MS 2.29 2.37 4 2 1 3 4 51.32 51.212 3;4 1.4108E-23 14692 20211116_3436_TMUAki_TMT10x_P_F8 169.25 139.91 25123000 41623000 129730 45088000 38570000 44743000 29401000 42886000 47314000 41914000 40350000 23391000 38852000 2211500 45747000 36748000 45561000 30857000 43668000 47103000 40975000 39139000 7 7 3 7 7 7 7 7 7 7 7 9483000 15276000 129730 18535000 23189000 28761000 16175000 14348000 16266000 14036000 14781000 8830600 14267000 1099100 18831000 22067000 28345000 16776000 15306000 16491000 13721000 14305000 3 3 3 3 3 3 3 3 3 3 3 15640000 26347000 0 26553000 15381000 15982000 13227000 28539000 31049000 27878000 25568000 14561000 24585000 1112400 26915000 14682000 17215000 14081000 28363000 30612000 27254000 24834000 4 4 0 4 4 4 4 4 4 4 4 2496800000 1655700000 841070000 10654 614 9895 56042;56043;56044;56045;56046;56047;56048 67913;67914;67915;67916;67917;67918 67915 6 KSQVFSTAADGQTQVEIK Unmodified 1935.9902 0.99017018 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 6.3 0.64 1 5 4 5 5 47.887 48.179 3;4;5 5.346E-31 12663 20211116_3434_TMUAki_TMT10x_P_F6 181.14 163.44 44246000 71193000 419800 82010000 79048000 81544000 45594000 61247000 69048000 56778000 63884000 41198000 66471000 4227700 82892000 74959000 82644000 48723000 63162000 69035000 55636000 61786000 12 12 8 12 12 12 12 12 12 12 12 23478000 37150000 355900 40510000 61271000 65735000 30533000 34086000 37152000 30755000 33482000 21863000 34678000 2754700 41467000 57995000 64699000 32784000 36154000 37375000 30174000 32412000 7 7 6 7 7 7 7 7 7 7 7 20768000 34043000 63904 41499000 17777000 15810000 15061000 27161000 31896000 26023000 30402000 19335000 31793000 1473000 41425000 16964000 17945000 15940000 27008000 31659000 25462000 29374000 5 5 2 5 5 5 5 5 5 5 5 11436000000 6762100000 4674000000 10655 972 9896 56049;56050;56051;56052;56053;56054;56055;56056;56057;56058 67919;67920;67921;67922;67923;67924;67925;67926;67927;67928;67929;67930 67919 12 KSSGEIVYCGQVFEK Unmodified 1729.8345 0.83452116 1495 Q02543 RPL18A 60S ribosomal protein L18a yes yes 0 0 0 1 By MS/MS By MS/MS 6.8 0.748 2 2 1 3 2 49.527 49.867 3 1.2012E-06 13398 20211116_3434_TMUAki_TMT10x_P_F6 111.7 90.469 43156000 69239000 198570 74905000 67847000 68617000 43671000 48719000 39415000 42611000 52363000 40181000 64628000 3710500 75922000 64433000 69843000 45429000 50356000 40744000 41868000 50112000 9 9 3 9 9 9 9 9 9 9 9 29392000 46286000 198570 49631000 54547000 58636000 33319000 33197000 26696000 28858000 34815000 27366000 43202000 2659400 50530000 51760000 58608000 34702000 34907000 27736000 28363000 33333000 5 5 3 5 5 5 5 5 5 5 5 13764000 22953000 0 25275000 13300000 9980600 10351000 15522000 12719000 13753000 17548000 12815000 21426000 1051100 25392000 12673000 11235000 10727000 15449000 13007000 13505000 16778000 4 4 0 4 4 4 4 4 4 4 4 5104700000 2718100000 2386600000 10656 1495 9897 56059;56060;56061;56062;56063 67931;67932;67933;67934;67935;67936;67937;67938;67939;67940 67932 10 KSSPSVKPAVDPAAAK Unmodified 1551.8621 0.86205654 1972 Q6FI81;Q6FI81-3 CIAPIN1 Anamorsin yes no 0 0 0 2 By matching By MS/MS 1 0 2 1 1 35.522 35.505 4 0.00090681 10184 20211116_3439_TMUAki_TMT10x_S_F1 70.942 63.031 233640 417330 513.31 418400 248120 222160 264030 266700 300760 245940 330330 217540 389410 20051 423820 238340 239420 268130 268290 305420 241050 317740 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 233640 417330 513.31 418400 248120 222160 264030 266700 300760 245940 330330 217540 389410 20051 423820 238340 239420 268130 268290 305420 241050 317740 1 1 1 1 1 1 1 1 1 1 1 64597000 46989000 17608000 10657 1972 9898 56064;56065 67941 67941 1 KSVTDSIRDEYAFLQK Unmodified 1898.9738 0.97379183 87 O00429;O00429-2;O00429-4;O00429-3;O00429-5;O00429-9;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 2 By MS/MS 8 0 1 1 58.788 58.965 4 1.6608E-07 17784 20211116_3436_TMUAki_TMT10x_P_F8 115.8 92.274 6618200 11132000 196040 10735000 9433000 13571000 8951900 7937300 7245100 6889800 8700500 6163700 10386000 770830 11022000 9044600 13523000 9052600 8323100 7497000 6772100 8348000 1 1 1 1 1 1 1 1 1 1 1 6618200 11132000 196040 10735000 9433000 13571000 8951900 7937300 7245100 6889800 8700500 6163700 10386000 770830 11022000 9044600 13523000 9052600 8323100 7497000 6772100 8348000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 452110000 452110000 0 10658 87 9899 56066 67942 67942 1 KSYTTPK Unmodified 823.44397 0.44396847 1387 P62979 RPS27A Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a yes yes 0 0 0 1 By matching By MS/MS 1 0 2 1 1 30.403 30.436 3 0.069111 8086 20211116_3439_TMUAki_TMT10x_S_F1 49.418 18.345 204070 304740 5150.6 285990 195930 236290 244660 188160 211830 204020 245530 190050 284290 21605 292340 189410 242700 244600 194220 218140 198610 235820 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 204070 304740 5150.6 285990 195930 236290 244660 188160 211830 204020 245530 190050 284290 21605 292340 189410 242700 244600 194220 218140 198610 235820 1 1 1 1 1 1 1 1 1 1 1 10055000 4034700 6020500 10659 1387 9900 56067;56068 67943 67943 1 KTCAYTNHTVLPEALER Unmodified 2001.9942 0.9942097 620 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 1 By MS/MS 6 0 1 1 39.495 39.512 4 0.00035108 9332 20211116_3434_TMUAki_TMT10x_P_F6 69.188 57.918 785840 1112000 2777.1 1332600 1794200 1886100 1085600 1122200 1168900 1037400 1118200 731720 1038500 81863 1352200 1702700 1870100 1140800 1177000 1183700 1016700 1080300 1 1 1 1 1 1 1 1 1 1 1 785840 1112000 2777.1 1332600 1794200 1886100 1085600 1122200 1168900 1037400 1118200 731720 1038500 81863 1352200 1702700 1870100 1140800 1177000 1183700 1016700 1080300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 60123000 60123000 0 10660 620 9901 56069 67944 67944 1 KTCTTVAFTQVNSEDK Unmodified 1827.8673 0.86727785 1358 P62424 RPL7A 60S ribosomal protein L7a yes yes 0 0 0 1 By MS/MS 7 0 1 1 41.551 41.999 3 7.8282E-23 12141 20211116_3435_TMUAki_TMT10x_P_F7 163.34 146.46 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10661 1358 9902 56070 67945 67945 1 KTCTTVAFTQVNSEDKGALAK Unmodified 2268.142 0.14199615 1358 P62424 RPL7A 60S ribosomal protein L7a yes yes 0 0 0 2 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 46.794 46.73 4 8.4104E-35 14761 20211116_3439_TMUAki_TMT10x_S_F1 189.79 166.46 6051600 10996000 42695 9030200 6490700 8356100 5792600 13547000 13467000 11429000 11108000 5635000 10253000 547660 9341100 6208700 8670800 6149800 13448000 13281000 11250000 10789000 4 4 4 4 4 4 4 4 4 4 4 1010900 1430000 13589 1370800 2938300 2974500 1561600 1722400 1803000 1540400 1500500 941340 1334100 123470 1426600 2783600 2903200 1663500 1808900 1813000 1511900 1456800 1 1 1 1 1 1 1 1 1 1 1 5040800 9566200 29106 7659400 3552500 5381500 4231000 11825000 11664000 9888900 9607700 4693700 8919100 424190 7914500 3425100 5767600 4486300 11639000 11468000 9737800 9331900 3 3 3 3 3 3 3 3 3 3 3 939480000 562640000 376840000 10662 1358 9903 56071;56072;56073 67946;67947;67948;67949 67947 4 KTDDVEAMSSQPALALDER Oxidation (M) 2090.979 0.97901315 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 1 1 By MS/MS By MS/MS 3.12 0.781 2 3 3 4 4 42.256 42.262 3;4 4.9673E-18 14093 20211116_3441_TMUAki_TMT10x_S_F3 154.56 142.07 7135600 11503000 42375 14514000 16444000 17093000 8979200 16299000 19484000 11456000 13769000 6643700 10745000 691070 14633000 15578000 17236000 9823500 16467000 19159000 11388000 13459000 17 17 10 17 17 17 17 17 17 17 17 3653600 5638200 26702 7192100 13919000 14458000 6588100 8316100 10165000 5903800 6910500 3401600 5266900 413610 7336000 13160000 14143000 7176600 8693000 10069000 5865300 6767000 10 10 5 10 10 10 10 10 10 10 10 3482000 5865000 15673 7322200 2525200 2634600 2391100 7983100 9318800 5552500 6858400 3242100 5478100 277450 7296800 2418000 3093300 2646800 7774000 9089800 5523000 6692200 7 7 5 7 7 7 7 7 7 7 7 1582000000 1020000000 562080000 10663 1057 9904 56074;56075;56076;56077;56078;56079;56080;56081 67950;67951;67952;67953;67954;67955;67956;67957;67958;67959;67960;67961;67962;67963;67964;67965;67966 67963 1373 17 KTDDVEAMSSQPALALDER Unmodified 2074.9841 0.98409852 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.707 1 2 1 3 1 51.534 51.387 3 9.935E-41 14959 20211116_3431_TMUAki_TMT10x_P_F4 203.23 187.11 7508100 12520000 67995 15356000 15884000 14334000 10862000 6501700 5664500 6834600 9604900 6991100 11693000 772250 15450000 15106000 14489000 11119000 7015700 6129900 6661300 9143500 5 5 1 5 5 5 5 5 5 5 5 6111400 10045000 67995 12495000 14907000 13573000 10046000 5288300 4560200 5610500 7723900 5690600 9382400 665550 12590000 14174000 13574000 10274000 5804600 4991600 5466300 7353100 4 4 1 4 4 4 4 4 4 4 4 1396700 2474600 0 2861000 976780 761000 815500 1213300 1104300 1224000 1880900 1300500 2310500 106710 2860000 932320 914950 844570 1211100 1138300 1195000 1790400 1 1 0 1 1 1 1 1 1 1 1 1406300000 1250900000 155440000 10664 1057 9904 56082;56083;56084;56085 67967;67968;67969;67970;67971 67969 5 KTDDVEAMSSQPALALDERK Unmodified 2203.0791 0.079061542 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 2 By MS/MS 5 0 1 1 48.22 48.392 4 2.1361E-06 14027 20211116_3433_TMUAki_TMT10x_P_F5 88.627 81.526 1787600 3159200 0 4106300 4792500 4051000 2601900 1740800 1768000 1713900 2532300 1664200 2951400 163830 4121400 4538500 4078400 2728000 1885700 1862200 1674900 2419100 1 1 0 1 1 1 1 1 1 1 1 1787600 3159200 0 4106300 4792500 4051000 2601900 1740800 1768000 1713900 2532300 1664200 2951400 163830 4121400 4538500 4078400 2728000 1885700 1862200 1674900 2419100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 450180000 450180000 0 10665 1057 9905 56086 67972 67972 1 KTDPSSLGATSASFNFGK Unmodified 1813.8846 0.88464248 3162 Q9UKX7;Q9UKX7-2 NUP50 Nuclear pore complex protein Nup50 yes no 0 0 0 1 By MS/MS By MS/MS 2.6 2.73 3 1 1 2 3 55.39 55.287 3 4.5893E-31 16504 20211116_3440_TMUAki_TMT10x_S_F2 183.71 171.54 7438600 12822000 29465 13922000 8340500 9267100 6681100 9639800 10429000 9109200 10321000 6925900 11968000 607310 14055000 7954100 9736200 6979700 9766400 10442000 8918300 9960100 3 3 1 3 3 3 3 3 3 3 3 2174800 3723500 29465 3885500 4028500 5156900 3005600 2940000 3201300 2627700 2766700 2025200 3475100 233730 3971400 3838800 5125300 3108300 3091700 3232800 2579200 2682400 1 1 1 1 1 1 1 1 1 1 1 5263800 9098500 0 10036000 4311900 4110200 3675500 6699800 7227900 6481500 7554800 4900800 8493300 373580 10084000 4115300 4610900 3871400 6674600 7209300 6339200 7277700 2 2 0 2 2 2 2 2 2 2 2 963840000 427770000 536070000 10666 3162 9906 56087;56088;56089;56090;56091 67973;67974;67975;67976;67977;67978 67978 6 KTEAPAAPAAQETK Unmodified 1411.7307 0.73070802 1437 P80723;P80723-2 BASP1 Brain acid soluble protein 1 yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 31.544 31.48 3 7.889E-07 7013 20211116_3431_TMUAki_TMT10x_P_F4 99.055 83.79 209280 316940 5289.3 344960 574280 407920 267580 171700 201730 170110 255160 194900 295840 27392 350880 543260 406370 285420 186450 210000 166200 244490 1 1 1 1 1 1 1 1 1 1 1 209280 316940 5289.3 344960 574280 407920 267580 171700 201730 170110 255160 194900 295840 27392 350880 543260 406370 285420 186450 210000 166200 244490 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23572000 23572000 0 10667 1437 9907 56092;56093 67979;67980 67979 2 KTEELEEESFPER Unmodified 1621.7471 0.74714594 3252 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.756 2 3 2 3 4 41.224 41.189 3 4.8177E-19 10589 20211116_3440_TMUAki_TMT10x_S_F2 183.41 168.26 2152400 3103200 69677 5097900 5551200 4423400 2567900 5685700 6202600 3407800 4529200 2004500 2903000 284300 5049700 5251500 4576200 2873200 5648900 6091600 3422100 4420900 4 4 3 4 4 4 4 4 4 4 4 935010 1171600 57494 2066800 4640800 3603000 1761000 2237200 2456000 1376900 1734500 871020 1096500 183000 2068300 4380900 3545100 1958300 2317800 2442500 1380200 1695600 1 1 1 1 1 1 1 1 1 1 1 1217300 1931600 12184 3031100 910400 820360 806920 3448400 3746600 2030900 2794700 1133500 1806500 101300 2981500 870630 1031100 914910 3331100 3649100 2041900 2725400 3 3 2 3 3 3 3 3 3 3 3 361870000 200410000 161460000 10668 3252 9908 56094;56095;56096;56097;56098;56099;56100 67981;67982;67983;67984;67985;67986;67987;67988 67986 8 KTEGYSGADISIIVR Unmodified 1607.8519 0.85188578 3187 Q9UN37 VPS4A Vacuolar protein sorting-associated protein 4A yes yes 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 50.286 50.579 3 0.0085399 16167 20211116_3446_TMUAki_TMT10x_S_F7 58.123 39.987 7396500 12331000 108930 13522000 13125000 10998000 9212900 8613400 8772700 8198700 10308000 6887700 11511000 794960 13673000 12493000 11306000 9535900 8865400 8998400 8024300 9896400 2 2 2 2 2 2 2 2 2 2 2 4500800 6702600 46879 7667200 9696400 8548500 6232000 4755100 4813100 4582400 5675700 4191100 6257900 489610 7766900 9213100 8569100 6458600 5021000 4989200 4482600 5448400 1 1 1 1 1 1 1 1 1 1 1 2895700 5628700 62050 5855200 3428100 2449600 2980900 3858300 3959600 3616200 4632600 2696600 5253100 305360 5906400 3279600 2737200 3077300 3844500 4009200 3541800 4448000 1 1 1 1 1 1 1 1 1 1 1 328820000 120110000 208710000 10669 3187 9909 56101;56102 67989;67990 67990 2 KTEPATGFIDGDLIESFLDISRPK Unmodified 2648.3697 0.36974748 1847 Q16531;Q16531-2 DDB1 DNA damage-binding protein 1 yes no 0 0 0 2 By MS/MS By MS/MS 6.55 1.37 1 2 2 2 4 7 4 72.129 72.131 4;5 6.5953E-61 27906 20211116_3446_TMUAki_TMT10x_S_F7 237.22 214.85 65130000 106560000 461210 94717000 68725000 88773000 75406000 53725000 55728000 57295000 73032000 60643000 99390000 5557800 97374000 66072000 90015000 75529000 56499000 58168000 55810000 69916000 14 14 7 14 14 14 14 14 14 14 14 33229000 55405000 248850 48409000 30038000 54590000 35610000 27756000 29193000 30433000 37349000 30940000 51673000 2786300 49972000 28947000 54629000 35631000 29655000 30269000 29612000 35777000 9 9 5 9 9 9 9 9 9 9 9 31901000 51157000 212360 46308000 38687000 34183000 39796000 25969000 26534000 26862000 35683000 29703000 47717000 2771500 47403000 37125000 35386000 39898000 26845000 27899000 26198000 34139000 5 5 2 5 5 5 5 5 5 5 5 25373000000 13597000000 11776000000 10670 1847 9910 56103;56104;56105;56106;56107;56108;56109;56110;56111;56112;56113 67991;67992;67993;67994;67995;67996;67997;67998;67999;68000;68001;68002;68003 68001 13 KTEPVIEQLAEPK Unmodified 1480.8137 0.81370936 3394 yes yes 0 0 0 1 By MS/MS 1.33 0.471 2 1 3 36.432 36.425 5 0.07769 10504 20211116_3439_TMUAki_TMT10x_S_F1 32.275 10.444 + 646340 1144600 21359 1119900 795270 766560 805730 761530 698460 701820 881210 601970 1067900 75578 1138900 764100 802600 813420 772740 721740 687890 844410 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 646340 1144600 21359 1119900 795270 766560 805730 761530 698460 701820 881210 601970 1067900 75578 1138900 764100 802600 813420 772740 721740 687890 844410 2 2 2 2 2 2 2 2 2 2 2 28736000 0 28736000 10671 3394 9911 56114;56115;56116 68004 68004 1 KTEQFQVSVSVAPAAK Unmodified 1688.9097 0.90973501 54 CON__Q3T052 yes yes 0 0 0 1 By MS/MS 8 0 1 1 48.523 48.424 3 1.8731E-10 12991 20211116_3447_TMUAki_TMT10x_S_F8 122.31 101.35 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10672 54 9912 56117 68005 68005 1 KTESAVSQMQSVIELGR Oxidation (M) 1877.9517 0.95167618 1002 P41252 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 0 0 1 1 By MS/MS 5.5 0.5 1 1 2 40.642 40.806 3 2.6818E-08 10105 20211116_3445_TMUAki_TMT10x_S_F6 118.05 107.4 288390 504180 3623.7 707140 230170 190270 213290 515150 580020 445990 479580 268530 471220 23965 699330 220330 233020 228580 505310 570460 438430 465740 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 288390 504180 3623.7 707140 230170 190270 213290 515150 580020 445990 479580 268530 471220 23965 699330 220330 233020 228580 505310 570460 438430 465740 2 2 1 2 2 2 2 2 2 2 2 31224000 0 31224000 10673 1002 9913 56118;56119 68006;68007;68008 68008 1294 3 KTESAVSQMQSVIELGR Unmodified 1861.9568 0.95676156 1002 P41252 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 0 0 0 1 By MS/MS 8 0 1 1 58.875 58.867 3 2.4598E-11 17195 20211116_3447_TMUAki_TMT10x_S_F8 137.05 121.66 3773900 7001600 124290 5809100 5348500 4969200 3957600 4172000 2970700 4794200 5156900 3514800 6528800 450770 5997900 5101000 5096200 4056600 4300700 3143000 4656700 4907000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3773900 7001600 124290 5809100 5348500 4969200 3957600 4172000 2970700 4794200 5156900 3514800 6528800 450770 5997900 5101000 5096200 4056600 4300700 3143000 4656700 4907000 1 1 1 1 1 1 1 1 1 1 1 867080000 0 867080000 10674 1002 9913 56120 68009 68009 1 KTETQEK Unmodified 862.43961 0.43961137 1356;1409 P62328;CON__P21752;O14604;P63313 TMSB4X;TMSB4Y;TMSB10 Thymosin beta-4;Hematopoietic system regulatory peptide;Thymosin beta-4, Y-chromosomal;Thymosin beta-10 no no 0 0 0 1 By MS/MS By MS/MS 4 1 1 1 1 1 26.291 26.107 3 0.008319 7669 20211116_3441_TMUAki_TMT10x_S_F3 93.649 59.396 425340 509040 13748 267520 268750 664250 242600 177940 155940 143710 265260 396140 474090 45883 295910 257860 641300 244760 204440 166310 141770 252500 2 2 2 2 2 2 2 2 2 2 2 78117 101650 1388.1 67830 39652 71705 35482 50467 39968 41824 52607 72745 94727 7231.3 71645 37999 72332 36348 52125 40913 41204 50356 1 1 1 1 1 1 1 1 1 1 1 347220 407390 12360 199690 229100 592550 207110 127480 115970 101890 212650 323390 379360 38651 224260 219860 568970 208410 152320 125400 100560 202140 1 1 1 1 1 1 1 1 1 1 1 8503500 1658500 6845100 10675 1356;1409 9914 56121;56122 68010;68011 68011 2 KTEYISTEFNR Unmodified 1386.6779 0.67794416 2207 Q8N7H5;Q8N7H5-3;Q8N7H5-2 PAF1 RNA polymerase II-associated factor 1 homolog yes no 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 39.712 39.802 3 7.088E-06 9526 20211116_3434_TMUAki_TMT10x_P_F6 115.8 96.064 2450600 3608000 34145 4364300 7145300 5396900 3221700 3458200 4023700 2912100 3844800 2282000 3369400 300750 4414300 6754700 5390800 3497900 3597600 4052000 2866600 3714500 4 4 4 4 4 4 4 4 4 4 4 1902500 2768800 23755 3278700 6630500 4922200 2731900 2797900 3291400 2351200 3032600 1771600 2585500 246090 3333300 6261000 4865300 2992200 2938600 3314800 2314700 2933500 2 2 2 2 2 2 2 2 2 2 2 548100 839130 10390 1085600 514870 474710 489810 660320 732280 560830 812240 510420 783920 54660 1081000 493680 525450 505650 659020 737190 551830 781070 2 2 2 2 2 2 2 2 2 2 2 151650000 90498000 61148000 10676 2207 9915 56123;56124 68012;68013;68014;68015 68012 4 KTFDLYANVRPCVSIEGYK Unmodified 2259.1358 0.13578856 1132 P50213;P50213-2 IDH3A Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial yes no 0 0 0 2 By MS/MS 3 0 1 1 61.503 61.229 4 3.5959E-12 20657 20211116_3430_TMUAki_TMT10x_P_F3 131.77 103.12 7863600 13253000 149760 13033000 8733700 14083000 9344800 7862500 7668600 7873400 9304900 7322900 12365000 803700 13327000 8398700 14143000 9395000 8308300 7932900 7689100 8925500 1 1 1 1 1 1 1 1 1 1 1 7863600 13253000 149760 13033000 8733700 14083000 9344800 7862500 7668600 7873400 9304900 7322900 12365000 803700 13327000 8398700 14143000 9395000 8308300 7932900 7689100 8925500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1380800000 1380800000 0 10677 1132 9916 56125 68016 68016 1 KTFEINPR Unmodified 1003.5451 0.5450795 672 P14625;Q58FF3 HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein yes no 0 0 0 1 By MS/MS 1 0 1 1 36.271 36.212 3 0.0043921 10434 20211116_3439_TMUAki_TMT10x_S_F1 78.556 55.776 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10678 672 9917 56126 68017 68017 1 KTFPTVNPTTGEVIGHVAEGDRADVDR Unmodified 2880.4366 0.43659827 880 P30837 ALDH1B1 Aldehyde dehydrogenase X, mitochondrial yes yes 0 0 0 2 By matching By MS/MS 6.67 0.471 1 2 1 2 48.523 48.944 5 2.8049E-12 13358 20211116_3445_TMUAki_TMT10x_S_F6 107.01 93.279 4861200 8342000 17813 8996300 3917600 3133100 3212800 6000500 6656900 5769000 6611500 4526200 7786400 382570 9043800 3738200 3617900 3402400 5949200 6619900 5643800 6379300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4861200 8342000 17813 8996300 3917600 3133100 3212800 6000500 6656900 5769000 6611500 4526200 7786400 382570 9043800 3738200 3617900 3402400 5949200 6619900 5643800 6379300 2 2 1 2 2 2 2 2 2 2 2 1708400000 708850000 999580000 10679 880 9918 56127;56128;56129 68018;68019 68018 2 KTFSHELSDFGLESTAGEIPVVAIR Unmodified 2702.3915 0.39154555 868 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 1 By MS/MS By MS/MS 6.43 1.4 1 1 1 2 2 2 5 71.978 72.005 4 1.4482E-38 24842 20211116_3446_TMUAki_TMT10x_S_F7 194.62 180.94 30713000 57184000 478460 50537000 43098000 56184000 42611000 43026000 35405000 40433000 43290000 28600000 53334000 2621100 52110000 41338000 56592000 43024000 44332000 36614000 39596000 41516000 12 12 8 12 12 12 12 12 12 12 12 11475000 19020000 28035 15198000 12017000 27349000 11517000 17513000 11664000 14512000 14846000 10685000 17733000 721090 15956000 11510000 26891000 11713000 18213000 11973000 14296000 14223000 5 5 3 5 5 5 5 5 5 5 5 19237000 38164000 450430 35339000 31081000 28834000 31094000 25513000 23741000 25921000 28443000 17915000 35601000 1900000 36154000 29828000 29701000 31312000 26120000 24641000 25299000 27293000 7 7 5 7 7 7 7 7 7 7 7 13130000000 3797300000 9332400000 10680 868 9919 56130;56131;56132;56133;56134;56135;56136 68020;68021;68022;68023;68024;68025;68026;68027;68028;68029;68030;68031 68031 12 KTFSYAGFEMQPK Unmodified 1532.7334 0.73335055 2609 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 1 By MS/MS 2 0 1 1 56.038 55.823 3 1.0446E-05 16692 20211116_3440_TMUAki_TMT10x_S_F2 90.367 78.343 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10681 2609 9920 56137 68032 68032 1 KTGCNVLLIQK Unmodified 1272.7224 0.72239194 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 1 By MS/MS 3 0 1 1 46.466 46.121 3 0.0611 15544 20211116_3441_TMUAki_TMT10x_S_F3 45.915 7.8945 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10682 1147 9921 56138 68033 68033 1 KTGLSSEQTVNVLAQILKR Unmodified 2084.1954 0.19535235 932 P35269 GTF2F1 General transcription factor IIF subunit 1 yes yes 0 0 0 2 By matching By MS/MS 6 0 2 1 1 68.792 68.736 4 3.0157E-17 21517 20211116_3445_TMUAki_TMT10x_S_F6 143.72 125.36 6516300 11477000 286730 11366000 6746000 8872900 8318000 7900200 8351000 9145500 9236500 6069500 10709000 810690 11566000 6525300 9171100 8356100 8118800 8525600 8880700 8882700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6516300 11477000 286730 11366000 6746000 8872900 8318000 7900200 8351000 9145500 9236500 6069500 10709000 810690 11566000 6525300 9171100 8356100 8118800 8525600 8880700 8882700 1 1 1 1 1 1 1 1 1 1 1 1588600000 775990000 812660000 10683 932 9922 56139;56140 68034 68034 1 KTGNFQVTELGR Unmodified 1348.7099 0.709913 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 1 By MS/MS 8 0 1 1 40.159 40.394 3 6.1932E-08 10204 20211116_3436_TMUAki_TMT10x_P_F8 111.95 91.287 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10684 352 9923 56141 68035 68035 1 KTGQAPGYSYTAANK Unmodified 1555.7631 0.76307078 1463 P99999 CYCS Cytochrome c yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 34.247 34.241 3 1.2413E-09 7680 20211116_3428_TMUAki_TMT10x_P_F1 130.64 108.77 579590 1026900 5816 1024900 1287600 927160 782510 580880 536930 585150 841890 539700 958240 63388 1044300 1222300 942780 812540 608200 567800 571310 802700 2 2 2 2 2 2 2 2 2 2 2 230190 400330 2248.3 398450 826200 516860 300660 226600 219940 234210 317120 214340 373550 29527 408390 779130 512710 329950 245270 230730 228430 302910 1 1 1 1 1 1 1 1 1 1 1 349410 626610 3567.6 626470 461400 410300 481850 354280 316990 350930 524760 325360 584690 33862 635880 443140 430070 482590 362930 337070 342880 499790 1 1 1 1 1 1 1 1 1 1 1 63412000 46039000 17373000 10685 1463 9924 56142;56143 68036;68037 68036 2 KTGQPMINLYTDR Oxidation (M) 1551.7715 0.77152697 940 P35637;P35637-2 FUS RNA-binding protein FUS yes no 0 0 1 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 38.616 38.963 3 0.001397 9533 20211116_3436_TMUAki_TMT10x_P_F8 70.134 56.934 354900 517210 0 636700 1106800 1004400 508340 601290 715790 505210 568490 330380 483060 31537 646600 1045600 991450 553340 628820 713890 497370 552960 2 2 0 2 2 2 2 2 2 2 2 354900 517210 0 636700 1106800 1004400 508340 601290 715790 505210 568490 330380 483060 31537 646600 1045600 991450 553340 628820 713890 497370 552960 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 93316000 93316000 0 10686 940 9925 56144;56145;56146 68038;68039;68040 68039 1201 3 KTGQPMINLYTDR Unmodified 1535.7766 0.77661235 940 P35637;P35637-2 FUS RNA-binding protein FUS yes no 0 0 0 1 By MS/MS 8 0 1 1 44.595 44.751 3 0.084375 12006 20211116_3436_TMUAki_TMT10x_P_F8 37.177 12.833 1364500 2337900 31948 3021500 4414800 3761000 2544700 1587600 1922300 1516700 2194300 1270800 2184100 185630 3045200 4188100 3737000 2659700 1721800 1992500 1484200 2108400 1 1 1 1 1 1 1 1 1 1 1 1364500 2337900 31948 3021500 4414800 3761000 2544700 1587600 1922300 1516700 2194300 1270800 2184100 185630 3045200 4188100 3737000 2659700 1721800 1992500 1484200 2108400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 181280000 181280000 0 10687 940 9925 56147 68041 68041 1 KTGQPMINLYTDRETGK Unmodified 1950.9833 0.98331066 940 P35637;P35637-2 FUS RNA-binding protein FUS yes no 0 0 0 2 By MS/MS By MS/MS 6 2.92 1 1 2 3 1 42.78 42.946 4 1.6856E-11 10744 20211116_3447_TMUAki_TMT10x_S_F8 139.11 114.57 13886000 21028000 96846 30335000 27469000 20333000 15769000 11624000 11885000 11811000 17898000 12929000 19656000 1329600 30140000 26044000 21135000 16486000 12263000 12474000 11527000 17079000 8 8 5 8 8 8 8 8 8 8 8 7950500 11947000 73249 16754000 23552000 16926000 11917000 7505200 7715700 7344200 10479000 7402600 11166000 867390 16755000 22290000 17021000 12567000 8101400 8131300 7179300 10023000 6 6 4 6 6 6 6 6 6 6 6 5935100 9080500 23597 13580000 3917100 3406500 3851100 4118400 4169200 4466700 7418900 5526200 8489900 462260 13384000 3754100 4113900 3919700 4161900 4342800 4348100 7056100 2 2 1 2 2 2 2 2 2 2 2 1267400000 1101800000 165560000 10688 940 9926 56148;56149;56150;56151 68042;68043;68044;68045;68046;68047;68048;68049 68049 8 KTGQPMINLYTDRETGK Oxidation (M) 1966.9782 0.97822529 940 P35637;P35637-2 FUS RNA-binding protein FUS yes no 0 0 1 2 By MS/MS By matching 8 0 2 1 1 38.121 38.471 4 0.00015246 9502 20211116_3436_TMUAki_TMT10x_P_F8 78.401 56.246 620810 919850 9764.6 1271000 1865600 1287200 942960 641800 585240 554700 798970 578110 859630 78005 1272000 1766300 1295800 993650 682500 618620 545340 764120 2 2 2 2 2 2 2 2 2 2 2 620810 919850 9764.6 1271000 1865600 1287200 942960 641800 585240 554700 798970 578110 859630 78005 1272000 1766300 1295800 993650 682500 618620 545340 764120 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 49883000 40076000 9807000 10689 940 9926 56152;56153 68050;68051 68051 1201 2 KTHIQDNHDGTYTVAYVPDVTGR Unmodified 2586.2463 0.2462783 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 1 By MS/MS 6.67 0.471 1 2 3 40.299 40.603 4;5 6.8333E-28 11622 20211116_3435_TMUAki_TMT10x_P_F7 167.72 153.31 3245100 5625400 81724 6518600 8323100 8967500 5587100 4899800 5634300 4479200 5283000 3022100 5252500 416330 6623600 7916800 8893100 5811800 5174400 5717400 4391900 5107200 5 5 5 5 5 5 5 5 5 5 5 3245100 5625400 81724 6518600 8323100 8967500 5587100 4899800 5634300 4479200 5283000 3022100 5252500 416330 6623600 7916800 8893100 5811800 5174400 5717400 4391900 5107200 5 5 5 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 635430000 635430000 0 10690 755 9927 56154;56155;56156 68052;68053;68054;68055;68056 68054 5 KTKPYIQVDIGGGQTK Unmodified 1731.9519 0.95193418 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 2 By MS/MS By MS/MS 3.18 2.37 2 4 3 2 5 6 44.432 44.312 3;4;5 1.8062E-28 13289 20211116_3429_TMUAki_TMT10x_P_F2 180.88 171.09 56585000 86823000 190270 83671000 72742000 74011000 60105000 49725000 56402000 52608000 59359000 52684000 81003000 4547900 85437000 69417000 75448000 61513000 51869000 57647000 51261000 57170000 13 13 6 13 13 13 13 13 13 13 13 32723000 48683000 75127 45579000 45786000 52174000 32767000 28493000 31537000 29147000 31781000 30468000 45415000 2635000 46816000 43568000 52212000 33880000 30184000 32146000 28440000 30650000 5 5 2 5 5 5 5 5 5 5 5 23862000 38140000 115140 38092000 26956000 21838000 27338000 21233000 24865000 23460000 27579000 22217000 35588000 1912900 38621000 25849000 23236000 27633000 21685000 25501000 22821000 26520000 8 8 4 8 8 8 8 8 8 8 8 8670100000 6104800000 2565300000 10691 614 9928 56157;56158;56159;56160;56161;56162;56163;56164;56165;56166;56167 68057;68058;68059;68060;68061;68062;68063;68064;68065;68066;68067;68068 68060 12 KTLDPDPAIR Unmodified 1124.619 0.61897272 1234 P55060;P55060-3;P55060-4;P55060-2 CSE1L Exportin-2 yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 36.269 36.328 3 0.00084169 8971 20211116_3431_TMUAki_TMT10x_P_F4 88.987 61.163 4313200 6679700 12576 7061800 7798700 6289800 5143700 4218200 5274100 4076900 5811800 4016000 6234300 401940 7165700 7410700 6408700 5360300 4389100 5378800 3987500 5589700 5 5 2 5 5 5 5 5 5 5 5 2497200 3662800 7888.4 3920400 5846800 4563700 2929500 2194100 2693300 2121500 2997200 2325100 3418800 255940 3990900 5533000 4556200 3116800 2348200 2761100 2075000 2881800 2 2 1 2 2 2 2 2 2 2 2 1816000 3016900 4687.6 3141400 1951900 1726100 2214100 2024100 2580700 1955400 2814600 1690800 2815500 146000 3174800 1877700 1852400 2243500 2040900 2617700 1912600 2707900 3 3 1 3 3 3 3 3 3 3 3 257530000 215930000 41601000 10692 1234 9929 56168;56169;56170 68069;68070;68071;68072;68073 68069 5 KTPCGEGSK Unmodified 962.44913 0.4491302 1278 P60866;P60866-2 RPS20 40S ribosomal protein S20 yes no 0 0 0 1 By MS/MS 5 0 1 1 27.623 27.551 3 0.0066066 5743 20211116_3433_TMUAki_TMT10x_P_F5 67.08 35.649 323560 467710 6780.2 268290 206800 390010 192930 231290 184300 181600 281510 301320 435670 31509 289610 198360 386250 196160 241690 191320 179400 268550 1 1 1 1 1 1 1 1 1 1 1 323560 467710 6780.2 268290 206800 390010 192930 231290 184300 181600 281510 301320 435670 31509 289610 198360 386250 196160 241690 191320 179400 268550 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8700200 8700200 0 10693 1278 9930 56171 68074 68074 1 KTPESKPTILVK Unmodified 1339.8075 0.80750177 3270 Q9Y3B9 RRP15 RRP15-like protein yes yes 0 0 0 2 By MS/MS By MS/MS 2 0 2 1 1 40.052 39.952 4 0.0007366 10120 20211116_3440_TMUAki_TMT10x_S_F2 81.703 60.75 1213800 1774400 20631 1983400 1705600 1505000 1376400 1079900 1268200 1113200 1478400 1130300 1656500 126750 2001500 1628400 1553100 1410000 1120400 1302400 1085800 1419700 2 2 2 2 2 2 2 2 2 2 2 721830 1004500 17397 1103800 1299600 1134200 830580 590360 778150 667160 831890 672230 937720 84150 1119500 1235400 1141300 865390 629990 795840 648420 800830 1 1 1 1 1 1 1 1 1 1 1 491940 769900 3233.3 879610 406050 370800 545850 489510 490080 446020 646550 458070 718810 42596 881990 393050 411800 544640 490400 506560 437400 618860 1 1 1 1 1 1 1 1 1 1 1 101320000 73136000 28180000 10694 3270 9931 56172;56173 68075;68076 68076 2 KTPPAPSPFDLPELK Unmodified 1635.8872 0.88720866 416 O95239 KIF4A Chromosome-associated kinesin KIF4A yes yes 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 63.076 63.361 3 1.0995E-09 19545 20211116_3436_TMUAki_TMT10x_P_F8 131.82 107.27 17267000 29938000 403490 29063000 20404000 30722000 20299000 19753000 19996000 19922000 22459000 16080000 27932000 1840100 29736000 19585000 30949000 20586000 20642000 20443000 19450000 21589000 4 4 3 4 4 4 4 4 4 4 4 12107000 20641000 278700 19930000 14799000 25890000 15165000 14012000 13950000 14389000 15605000 11275000 19257000 1289800 20471000 14215000 25741000 15326000 14857000 14304000 14037000 15002000 3 3 2 3 3 3 3 3 3 3 3 5159300 9297900 124790 9133900 5604900 4831400 5134000 5741000 6045600 5533000 6853800 4804800 8675300 550280 9265300 5369900 5207800 5260400 5784900 6139100 5412400 6586600 1 1 1 1 1 1 1 1 1 1 1 1821500000 1150000000 671560000 10695 416 9932 56174;56175;56176 68077;68078;68079;68080 68078 4 KTPQGPPEIYSDTQFPSLQSTAK Unmodified 2519.2544 0.25438337 3163 Q9UKY7;Q9UKY7-2;Q9UKY7-3 CDV3 Protein CDV3 homolog yes no 0 0 0 1 By MS/MS By MS/MS 7.4 0.49 3 2 2 3 58.615 59.002 3;4 4.8626E-28 18934 20211116_3435_TMUAki_TMT10x_P_F7 173.55 159.39 22865000 38417000 197560 37365000 28626000 41363000 27522000 31090000 29309000 30076000 33341000 21291000 35843000 1549800 38252000 27428000 41660000 28030000 32098000 29881000 29416000 32038000 10 10 3 10 10 10 10 10 10 10 10 14139000 22922000 197560 23294000 18592000 32383000 19546000 19542000 18136000 18661000 19957000 13166000 21390000 1353400 23873000 17858000 32140000 19733000 20490000 18577000 18262000 19195000 6 6 3 6 6 6 6 6 6 6 6 8726200 15495000 0 14070000 10034000 8979700 7976100 11548000 11172000 11415000 13384000 8124900 14453000 196420 14379000 9569300 9519700 8297100 11608000 11304000 11154000 12843000 4 4 0 4 4 4 4 4 4 4 4 4778600000 2739800000 2038900000 10696 3163 9933 56177;56178;56179;56180;56181 68081;68082;68083;68084;68085;68086;68087;68088;68089;68090 68081 10 KTPVPGK Unmodified 725.44357 0.44357454 1304 P61224;P61224-2;P61224-3;A6NIZ1;P61224-4 RAP1B Ras-related protein Rap-1b;Ras-related protein Rap-1b-like protein yes no 0 0 0 1 By MS/MS 1 0 1 1 31.276 31.325 3 0.04451 8488 20211116_3439_TMUAki_TMT10x_S_F1 59.245 25.448 398480 705580 7377.5 610120 409070 393800 518060 370320 372930 383150 523970 371080 658020 40061 625930 395420 413990 515300 378090 391100 373680 500780 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 398480 705580 7377.5 610120 409070 393800 518060 370320 372930 383150 523970 371080 658020 40061 625930 395420 413990 515300 378090 391100 373680 500780 1 1 1 1 1 1 1 1 1 1 1 11789000 0 11789000 10697 1304 9934 56182 68091 68091 1 KTRPDGNCFYR Unmodified 1412.6619 0.66191694 2463 Q96FW1 OTUB1 Ubiquitin thioesterase OTUB1 yes yes 0 0 0 2 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 29.988 29.906 4 7.2395E-07 7494 20211116_3429_TMUAki_TMT10x_P_F2 136.27 124.71 512260 838020 20711 803020 1085600 904170 681170 720560 839050 621320 815740 477120 781830 69802 823200 1032000 910740 716970 738920 845860 610900 787640 2 2 2 2 2 2 2 2 2 2 2 270390 455740 13378 420720 778540 622960 390880 387770 431880 303520 429890 251860 425130 42002 434700 737560 616870 418020 403600 437500 299900 414760 1 1 1 1 1 1 1 1 1 1 1 241870 382280 7333.1 382300 307060 281210 290290 332800 407170 317800 385850 225260 356710 27800 388500 294450 293870 298950 335310 408360 311000 372880 1 1 1 1 1 1 1 1 1 1 1 16958000 12044000 4913200 10698 2463 9935 56183;56184 68092;68093 68092 2 KTSATVGPK Unmodified 887.50763 0.50763136 690 P16104 H2AFX Histone H2AX yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 29.755 29.788 3 0.00037575 7841 20211116_3439_TMUAki_TMT10x_S_F1 115.57 83.443 860900 1351900 7717 1132000 1344700 1253200 1032000 724670 778300 805740 980940 801640 1260600 85343 1172100 1282000 1257300 1055300 765900 810080 783590 940000 2 2 2 2 2 2 2 2 2 2 2 362640 515080 542.26 526450 744870 610260 352540 267330 320930 309510 419050 337660 480670 35924 537520 704390 608810 377130 290370 331360 300550 401200 1 1 1 1 1 1 1 1 1 1 1 498260 836780 7174.7 605510 599820 642940 679490 457340 457370 496230 561890 463980 779940 49418 634610 577570 648500 678200 475520 478720 483050 538800 1 1 1 1 1 1 1 1 1 1 1 39112000 16116000 22997000 10699 690 9936 56185;56186 68094 68094 1 KTSAYGPPTR Unmodified 1076.5615 0.56145784 3253 Q9Y2W2 WBP11 WW domain-binding protein 11 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 29 29.04 3 0.0064282 5662 20211116_3428_TMUAki_TMT10x_P_F1 64.827 38.708 247170 419850 3274.7 384520 336580 343390 326160 213710 264940 254290 323490 230170 391640 24796 394150 322670 349450 329490 225040 274280 246680 310240 2 2 2 2 2 2 2 2 2 2 2 98472 181870 1604.2 158720 177340 202820 143410 93209 108240 97347 145030 91699 169620 10764 164210 169290 201440 146150 100420 112960 94903 138770 1 1 1 1 1 1 1 1 1 1 1 148700 237980 1670.5 225800 159240 140570 182750 120500 156700 156940 178450 138470 222020 14033 229940 153380 148010 183330 124620 161320 151780 171470 1 1 1 1 1 1 1 1 1 1 1 12052000 5387800 6664600 10700 3253 9937 56187;56188 68095;68096 68095 2 KTSCEFTGDILR Unmodified 1425.6922 0.69221402 753 P21281 ATP6V1B2 V-type proton ATPase subunit B, brain isoform yes yes 0 0 0 1 By MS/MS 6 0 1 1 44.164 44.329 3 1.9189E-05 11486 20211116_3445_TMUAki_TMT10x_S_F6 95.428 69.781 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10701 753 9938 56189 68097 68097 1 KTSDFNTFLAQEGCTK Unmodified 1845.8567 0.85671317 3117 Q9UHD1;Q9UHD1-2 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 54.042 54.662 3 7.5273E-07 17723 20211116_3446_TMUAki_TMT10x_S_F7 101.67 85.362 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10702 3117 9939 56190;56191 68098;68099 68099 2 KTSFVNFTDICK Unmodified 1458.7177 0.71770049 738 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 0 0 0 1 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 57.821 57.584 3 2.6013E-07 18672 20211116_3429_TMUAki_TMT10x_P_F2 128.96 99.986 14077000 24854000 93601 28618000 22355000 23553000 16162000 18298000 13878000 17890000 19763000 13107000 23205000 1291900 28853000 21280000 24189000 16647000 18857000 14427000 17489000 18883000 2 2 1 2 2 2 2 2 2 2 2 7201600 12137000 93601 14327000 16218000 17724000 11412000 8902100 6818400 8731800 9855900 6706100 11333000 810580 14512000 15436000 17649000 11684000 9491200 7245300 8534900 9413600 1 1 1 1 1 1 1 1 1 1 1 6875600 12716000 0 14290000 6136800 5828600 4750100 9395700 7059300 9158000 9907500 6401300 11872000 481300 14341000 5844300 6539900 4962200 9365800 7181600 8953900 9469300 1 1 0 1 1 1 1 1 1 1 1 1762700000 1101500000 661210000 10703 738 9940 56192;56193;56194 68100;68101;68102 68100 3 KTSYLTELIDR Unmodified 1337.7191 0.7190807 3348 Q9Y6E0;Q9Y6E0-2;Q9P289;Q9P289-2;Q9P289-3 STK24;STK26 Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit;Serine/threonine-protein kinase 26 yes no 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 55.823 56.45 3 1.6669E-06 17877 20211116_3435_TMUAki_TMT10x_P_F7 124.51 96.548 25179000 40521000 127420 45889000 31362000 37252000 27537000 25779000 25823000 26524000 31040000 23445000 37830000 2204300 46306000 29977000 38225000 28079000 26812000 26530000 25874000 29782000 3 3 2 3 3 3 3 3 3 3 3 14655000 24164000 70955 26309000 23733000 28963000 19516000 15084000 14779000 15314000 18033000 13645000 22555000 1319800 26727000 22649000 29030000 19870000 16044000 15358000 14947000 17295000 2 2 1 2 2 2 2 2 2 2 2 10524000 16357000 56470 19580000 7628300 8288900 8021200 10695000 11043000 11211000 13008000 9799200 15275000 884580 19579000 7327700 9194800 8209300 10768000 11172000 10928000 12487000 1 1 1 1 1 1 1 1 1 1 1 1504300000 877310000 626970000 10704 3348 9941 56195;56196 68103;68104;68105 68103 3 KTTGLVGLAVCNTPHER Unmodified 1851.9625 0.96251564 1861 Q16718 NDUFA5 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 yes yes 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 40.496 40.532 4 1.7606E-05 10175 20211116_3428_TMUAki_TMT10x_P_F1 88.565 76.589 1163100 1598300 8619.3 2150600 1586600 1389000 1235300 1024200 960130 859390 1388700 1083000 1493500 110390 2143600 1513000 1453800 1262900 1054800 1004000 846120 1326300 2 2 2 2 2 2 2 2 2 2 2 538290 664220 3596.7 927200 1078000 1073600 708440 587970 572850 453160 734370 501230 620770 55538 929510 1024500 1073700 733730 618270 594450 448140 703420 1 1 1 1 1 1 1 1 1 1 1 624820 934120 5022.5 1223400 508660 315420 526910 436230 387270 406230 654300 581810 872710 54856 1214100 488490 380050 529190 436530 409570 397980 622910 1 1 1 1 1 1 1 1 1 1 1 124480000 107190000 17281000 10705 1861 9942 56197;56198 68106;68107 68106 2 KTTHFVEGGDAGNREDQINR Unmodified 2243.0679 0.067920004 716 P18124 RPL7 60S ribosomal protein L7 yes yes 0 0 0 2 By MS/MS 4.5 0.5 3 3 6 30.059 30.034 3;4;5 4.775E-71 6368 20211116_3431_TMUAki_TMT10x_P_F4 277.25 262.48 1170700 1685000 12103 2103600 4602500 2431500 1351700 1042500 1487400 914680 1576400 1090100 1573900 142970 2121400 4331200 2425600 1545300 1126300 1510400 898590 1517900 6 6 2 6 6 6 6 6 6 6 6 1170700 1685000 12103 2103600 4602500 2431500 1351700 1042500 1487400 914680 1576400 1090100 1573900 142970 2121400 4331200 2425600 1545300 1126300 1510400 898590 1517900 6 6 2 6 6 6 6 6 6 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 320750000 320750000 0 10706 716 9943 56199;56200;56201;56202;56203;56204 68108;68109;68110;68111;68112;68113;68114 68109 7 KTTIENIQLPHTLLSR Unmodified 1863.0578 0.057796236 911 P33991 MCM4 DNA replication licensing factor MCM4 yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 54.659 54.409 4 1.4739E-10 18892 20211116_3441_TMUAki_TMT10x_S_F3 125.18 112.19 39030000 62180000 452720 66635000 47920000 56111000 39979000 47518000 46793000 44440000 50954000 36344000 58037000 3742000 67507000 45773000 57618000 41179000 48655000 47453000 43530000 49025000 11 11 7 11 11 11 11 11 11 11 11 16468000 24846000 114130 26411000 25959000 34368000 19177000 18523000 19057000 18087000 19993000 15334000 23190000 1573200 26952000 24725000 34165000 19803000 19619000 19426000 17683000 19257000 5 5 3 5 5 5 5 5 5 5 5 22562000 37333000 338600 40224000 21961000 21743000 20802000 28995000 27735000 26353000 30961000 21010000 34847000 2168800 40554000 21048000 23453000 21376000 29035000 28027000 25847000 29767000 6 6 4 6 6 6 6 6 6 6 6 5191700000 2528900000 2662800000 10707 911 9944 56205;56206;56207;56208 68115;68116;68117;68118;68119;68120;68121;68122;68123;68124;68125 68125 11 KTTLQVDTLNAELAAER Unmodified 1871.9953 0.99525556 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 52.821 53.011 3 2.6842E-29 14782 20211116_3444_TMUAki_TMT10x_S_F5 188.04 161.02 5067800 8287400 40241 8380800 8092600 10824000 5590000 11109000 10293000 9195600 8426100 4718800 7733400 495790 8579700 7698800 10882000 5946600 11223000 10200000 9059800 8186200 2 2 1 2 2 2 2 2 2 2 2 2532900 4228300 40241 4136100 5212100 8051500 3399600 5602700 5178900 4607400 4053000 2358700 3945100 285020 4284500 4954500 7905800 3598200 5790200 5150900 4540900 3944600 1 1 1 1 1 1 1 1 1 1 1 2534800 4059100 0 4244700 2880500 2772400 2190400 5505800 5114500 4588200 4373100 2360200 3788300 210760 4295200 2744300 2976500 2348400 5432500 5048800 4518900 4241600 1 1 0 1 1 1 1 1 1 1 1 900140000 513760000 386370000 10708 935 9945 56209;56210 68126;68127 68127 2 KTVEDYFCFCYGK Unmodified 1715.7324 0.73236428 1428 P78347;P78347-2;P78347-4;P78347-3;P78347-5 GTF2I General transcription factor II-I yes no 0 0 0 1 By MS/MS 1 0 1 1 66.68 66.457 3 0.00079618 22768 20211116_3439_TMUAki_TMT10x_S_F1 67.93 55.765 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10709 1428 9946 56211 68128 68128 1 KTVGVEPAADGK Unmodified 1170.6245 0.62445203 1053 P46779;P46779-2;P46779-3;P46779-4;P46779-5 RPL28 60S ribosomal protein L28 yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 33.848 33.833 3 0.00056559 8233 20211116_3433_TMUAki_TMT10x_P_F5 81.448 52.815 518940 860150 9538.4 858310 1024300 1007000 664970 508360 545680 442330 631480 483260 802600 58992 877970 973730 1005500 689610 540050 563400 434720 606510 1 1 1 1 1 1 1 1 1 1 1 518940 860150 9538.4 858310 1024300 1007000 664970 508360 545680 442330 631480 483260 802600 58992 877970 973730 1005500 689610 540050 563400 434720 606510 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42158000 42158000 0 10710 1053 9947 56212;56213 68129 68129 1 KTVTAMDVVYALK Oxidation (M) 1453.7851 0.78505177 1366 P62805 HIST1H4A Histone H4 yes yes 0 0 1 1 By MS/MS By MS/MS 3.92 3.1 4 4 1 4 7 6 59.638 59.601 3 6.9076E-05 18086 20211116_3440_TMUAki_TMT10x_S_F2 94.717 48.111 83853000 142570000 476760 136910000 130140000 207700000 106500000 282400000 212990000 185490000 159980000 78073000 133010000 7250000 141130000 124160000 208900000 112560000 280460000 210140000 185150000 155970000 17 17 7 17 17 17 17 17 17 17 17 43711000 71682000 111560 70286000 86799000 153620000 66315000 140100000 106770000 91818000 79098000 40695000 66882000 3806600 73048000 82685000 151050000 69590000 141680000 105870000 91664000 77160000 9 9 3 9 9 9 9 9 9 9 9 40143000 70883000 365200 66627000 43338000 54081000 40187000 142300000 106220000 93671000 80885000 37377000 66126000 3443300 68084000 41479000 57851000 42973000 138770000 104270000 93487000 78811000 8 8 4 8 8 8 8 8 8 8 8 23254000000 14716000000 8538100000 10711 1366 9948 56214;56215;56216;56217;56218;56219;56220;56221;56222;56223;56224;56225;56226 68130;68131;68132;68133;68134;68135;68136;68137;68138;68139;68140;68141;68142;68143;68144;68145;68146 68141 1833 17 KTVTAMDVVYALK Unmodified 1437.7901 0.79013715 1366 P62805 HIST1H4A Histone H4 yes yes 0 0 0 1 By MS/MS By MS/MS 2.43 0.648 1 12 9 1 21 2 74.052 73.975 3 3.0559E-09 23342 20211116_3429_TMUAki_TMT10x_P_F2 131.24 101.55 95743000 153400000 583330 156450000 124380000 154420000 129610000 91707000 47885000 80272000 120060000 89148000 143150000 8605100 159360000 119410000 156030000 128660000 96064000 54852000 78869000 113580000 33 33 20 33 33 33 33 33 33 33 33 53444000 87586000 449880 84097000 79154000 112170000 83503000 50651000 30355000 47875000 64554000 49762000 81714000 4937900 86459000 76016000 111160000 82828000 54520000 34420000 46872000 61214000 30 30 18 30 30 30 30 30 30 30 30 42299000 65819000 133450 72352000 45226000 42246000 46102000 41056000 17530000 32397000 55501000 39386000 61440000 3667100 72899000 43395000 44868000 45833000 41544000 20432000 31997000 52364000 3 3 2 3 3 3 3 3 3 3 3 17383000000 10509000000 6873500000 10712 1366 9948 56227;56228;56229;56230;56231;56232;56233;56234;56235;56236;56237;56238;56239;56240;56241;56242;56243;56244;56245;56246;56247;56248;56249 68147;68148;68149;68150;68151;68152;68153;68154;68155;68156;68157;68158;68159;68160;68161;68162;68163;68164;68165;68166;68167;68168;68169;68170;68171;68172;68173;68174;68175;68176;68177;68178;68179;68180;68181;68182 68149 36 KTVTAMDVVYALKR Oxidation (M) 1609.8862 0.8861628 1366 P62805 HIST1H4A Histone H4 yes yes 0 0 1 2 By MS/MS By MS/MS 3.76 0.921 2 6 8 5 11 10 54.124 54.104 3;4 3.3487E-09 17655 20211116_3430_TMUAki_TMT10x_P_F3 126.07 110.52 91511000 154340000 1284000 153480000 204190000 332300000 132700000 515370000 310090000 248360000 221120000 85213000 144010000 9820800 159310000 194050000 331610000 143830000 506760000 304540000 253560000 216060000 28 28 17 28 28 28 28 28 28 28 28 57738000 95734000 796960 95045000 162170000 288370000 104650000 308490000 190600000 152450000 135300000 53764000 89327000 6779600 99901000 154080000 282300000 111820000 307960000 188180000 155320000 132230000 17 17 8 17 17 17 17 17 17 17 17 33773000 58605000 487040 58431000 42024000 43928000 28054000 206880000 119480000 95906000 85822000 31449000 54684000 3041200 59404000 39971000 49308000 32017000 198800000 116360000 98239000 83832000 11 11 9 11 11 11 11 11 11 11 11 43591000000 27946000000 15645000000 10713 1366 9949 56250;56251;56252;56253;56254;56255;56256;56257;56258;56259;56260;56261;56262;56263;56264;56265;56266;56267;56268;56269;56270 68183;68184;68185;68186;68187;68188;68189;68190;68191;68192;68193;68194;68195;68196;68197;68198;68199;68200;68201;68202;68203;68204;68205;68206;68207;68208;68209 68186 1833 27 KTVTAMDVVYALKR Unmodified 1593.8912 0.89124818 1366 P62805 HIST1H4A Histone H4 yes yes 0 0 0 2 By MS/MS By MS/MS 4.93 1.16 2 3 4 4 1 7 7 62.092 62.112 3;4 1.5489E-29 19465 20211116_3433_TMUAki_TMT10x_P_F5 210.02 177.96 161700000 253110000 1375400 267650000 258320000 257650000 197570000 206690000 109320000 154840000 222710000 150560000 236240000 15504000 271870000 246210000 261950000 200850000 211170000 119100000 153360000 211330000 18 18 12 18 18 18 18 18 18 18 18 63631000 94991000 721540 103480000 127940000 165470000 104400000 78567000 45049000 61538000 83844000 59250000 88668000 6639500 105890000 122110000 162800000 105290000 83757000 49803000 60802000 79680000 9 9 7 9 9 9 9 9 9 9 9 98066000 158120000 653880 164170000 130380000 92172000 93172000 128120000 64271000 93306000 138870000 91311000 147570000 8864200 165980000 124100000 99148000 95560000 127410000 69297000 92562000 131650000 9 9 5 9 9 9 9 9 9 9 9 28094000000 13781000000 14313000000 10714 1366 9949 56271;56272;56273;56274;56275;56276;56277;56278;56279;56280;56281;56282;56283;56284 68210;68211;68212;68213;68214;68215;68216;68217;68218;68219;68220;68221;68222;68223;68224;68225;68226;68227;68228 68213 19 KTVTPAK Unmodified 743.45414 0.45413923 729 P19338 NCL Nucleolin yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 29.772 29.805 3 0.0096915 5928 20211116_3428_TMUAki_TMT10x_P_F1 91.069 37.902 952260 1488600 4542.7 1083100 1001500 1263100 1075200 638170 687890 707650 1017200 886650 1387500 80280 1136300 962140 1261600 1074800 682470 728450 688260 971050 2 2 1 2 2 2 2 2 2 2 2 436380 638520 4542.7 469400 436640 619090 424040 277430 312270 303270 434430 406350 595170 40417 493050 418630 613780 427320 300090 326900 295130 415290 1 1 1 1 1 1 1 1 1 1 1 515870 850040 0 613720 564820 644020 651160 360740 375630 404380 582760 480300 792290 39863 643240 543510 647850 647450 382380 401540 393140 555760 1 1 0 1 1 1 1 1 1 1 1 22550000 9642400 12907000 10715 729 9950 56285;56286 68229;68230 68229 2 KTYDSYLGDDYVR Unmodified 1593.7311 0.73110195 49 CON__Q29443;CON__Q0IIK2 yes no 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 46.545 46.706 3 3.9914E-06 13266 20211116_3433_TMUAki_TMT10x_P_F5 100.43 88.261 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10716 49 9951 56287;56288 68231;68232 68231 2 KTYVTPR Unmodified 863.4865 0.48650199 1054 P46781 RPS9 40S ribosomal protein S9 yes yes 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 29.17 29.119 3 0.0040668 7216 20211116_3429_TMUAki_TMT10x_P_F2 101.64 78.087 2323500 3835200 16903 3386000 2453200 3125300 2532800 1669100 1672500 1792800 2539900 2163600 3577000 210210 3482100 2355300 3167200 2538300 1774200 1769900 1745800 2423300 3 3 3 3 3 3 3 3 3 3 3 1460300 2394800 12498 2052500 1524300 2416600 1555400 1128500 1114400 1175000 1619500 1359800 2233300 133610 2123500 1463100 2410500 1562400 1213800 1170900 1145700 1546600 2 2 2 2 2 2 2 2 2 2 2 863220 1440400 4405.1 1333500 928940 708710 977380 540620 558180 617750 920410 803780 1343700 76593 1358600 892190 756750 975890 560460 599050 600150 876670 1 1 1 1 1 1 1 1 1 1 1 86077000 55337000 30741000 10717 1054 9952 56289;56290;56291 68233;68234;68235 68234 3 KVAAIEALNDGELQK Unmodified 1597.8675 0.86753585 1137 P50502;Q8IZP2 ST13;ST13P4 Hsc70-interacting protein;Putative protein FAM10A4 yes no 0 0 0 1 By MS/MS By MS/MS 6.33 0.943 1 2 1 2 55.066 55.693 3 8.4612E-07 18155 20211116_3446_TMUAki_TMT10x_S_F7 114.63 94.789 13431000 20474000 181370 29249000 19485000 18642000 12689000 13973000 17029000 13666000 18156000 12506000 19137000 1248000 29060000 18516000 19540000 13361000 14433000 17174000 13360000 17479000 2 2 1 2 2 2 2 2 2 2 2 6608400 9227200 0 12944000 14703000 14155000 8076000 6526900 7787500 6201400 7808700 6152200 8623900 541930 12960000 13923000 14174000 8529400 7011300 7935800 6070000 7532100 1 1 0 1 1 1 1 1 1 1 1 6822400 11247000 181370 16305000 4782900 4487000 4613100 7445700 9241500 7464700 10347000 6353700 10513000 706090 16100000 4592800 5366600 4831400 7421500 9238300 7289600 9947100 1 1 1 1 1 1 1 1 1 1 1 2501100000 1386500000 1114600000 10718 1137 9953 56292;56293;56294 68236;68237;68238 68238 3 KVACIGAWHPAR Unmodified 1364.7136 0.71355858 975 P39023;Q92901 RPL3;RPL3L 60S ribosomal protein L3;60S ribosomal protein L3-like yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.824 35.878 4 2.359E-07 8741 20211116_3431_TMUAki_TMT10x_P_F4 125.97 107.22 1909600 3241500 17660 3721400 5835800 3406000 2802900 1671800 1680800 1470700 2823000 1778100 3026500 225300 3757800 5520100 3450300 2967000 1781200 1799500 1444600 2687900 3 3 2 3 3 3 3 3 3 3 3 1467900 2427000 15562 2786700 5402000 3137300 2368500 1267700 1310900 1126100 2151600 1366900 2265900 186840 2822700 5104100 3132400 2528300 1379000 1409700 1105600 2049500 2 2 1 2 2 2 2 2 2 2 2 441650 814590 2098.3 934700 433730 268740 434440 404040 369870 344570 671410 411240 760550 38461 935110 416030 317890 438640 402190 389800 338970 638350 1 1 1 1 1 1 1 1 1 1 1 470060000 428300000 41758000 10719 975 9954 56295;56296;56297 68239;68240;68241 68239 3 KVAETAVQLFISGDK Unmodified 1604.8774 0.87737225 1360 P62495;P62495-2 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 0 0 0 1 By MS/MS By MS/MS 3.67 3.09 2 2 2 2 4 72.504 72.349 2;3 5.3824E-10 23171 20211116_3436_TMUAki_TMT10x_P_F8 115.63 98.943 14722000 23913000 8941.9 23707000 14388000 15408000 14819000 11765000 11647000 13291000 16629000 13706000 22312000 985210 24076000 13791000 16126000 14910000 12191000 12164000 12918000 15887000 4 4 1 4 4 4 4 4 4 4 4 3499400 5193500 8941.9 5478300 3421300 5503400 3662200 2776700 2703200 2926900 3614000 3258300 4847200 297360 5569100 3287100 5543700 3672400 2965300 2824300 2852400 3458100 1 1 1 1 1 1 1 1 1 1 1 11223000 18719000 0 18229000 10966000 9904100 11156000 8987900 8943800 10364000 13015000 10448000 17465000 687850 18507000 10504000 10583000 11238000 9225700 9340100 10066000 12429000 3 3 0 3 3 3 3 3 3 3 3 2056000000 710180000 1345900000 10720 1360 9955 56298;56299;56300;56301;56302;56303 68242;68243;68244;68245;68246;68247;68248 68243 7 KVAGMDVELTVEER Oxidation (M) 1590.7923 0.792322 1342 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 1 1 By MS/MS By MS/MS 2.77 1.05 2 2 7 1 1 8 5 39.351 39.313 3 2.1423E-09 10601 20211116_3428_TMUAki_TMT10x_P_F1 128.63 109.3 27315000 44868000 397770 45765000 45276000 50959000 33745000 41192000 41928000 37115000 40463000 25434000 41870000 2727800 46703000 43137000 51374000 35085000 42252000 42244000 36416000 39078000 16 16 14 16 16 16 16 16 16 16 16 17889000 28356000 283350 29135000 33101000 40666000 22291000 24917000 26700000 23478000 25681000 16659000 26462000 1928400 29840000 31482000 40363000 23313000 26085000 26934000 22989000 24806000 11 11 10 11 11 11 11 11 11 11 11 9425300 16512000 114420 16630000 12175000 10293000 11454000 16275000 15228000 13637000 14781000 8775700 15408000 799440 16862000 11655000 11011000 11773000 16166000 15311000 13427000 14273000 5 5 4 5 5 5 5 5 5 5 5 6110600000 2674200000 3436400000 10721 1342 9956 56304;56305;56306;56307;56308;56309;56310;56311;56312;56313;56314;56315;56316 68249;68250;68251;68252;68253;68254;68255;68256;68257;68258;68259;68260;68261;68262;68263;68264;68265;68266;68267 68249 1799 19 KVAGMDVELTVEER Unmodified 1574.7974 0.79740737 1342 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 0 1 By MS/MS By MS/MS 3.22 1.31 1 2 2 2 2 5 4 50.798 50.797 3 7.8525E-21 15868 20211116_3429_TMUAki_TMT10x_P_F2 163.7 136.57 41291000 65300000 574410 75790000 51855000 45205000 48669000 25482000 22997000 29061000 48151000 38449000 60971000 4026300 76120000 49671000 47495000 48739000 27011000 25412000 28235000 45671000 7 7 4 7 7 7 7 7 7 7 7 19665000 30106000 375030 34670000 27938000 28417000 25591000 12095000 10175000 13048000 22336000 18313000 28109000 2064800 34954000 26750000 28968000 25603000 13150000 11457000 12704000 21170000 3 3 2 3 3 3 3 3 3 3 3 21625000 35194000 199390 41119000 23917000 16788000 23078000 13387000 12822000 16014000 25815000 20136000 32862000 1961500 41166000 22921000 18527000 23136000 13861000 13954000 15532000 24501000 4 4 2 4 4 4 4 4 4 4 4 2795000000 1136300000 1658700000 10722 1342 9956 56317;56318;56319;56320;56321;56322;56323;56324;56325 68268;68269;68270;68271;68272;68273;68274;68275;68276;68277;68278 68269 11 KVAPAPAVVK Unmodified 978.6226 0.62260154 1358 P62424 RPL7A 60S ribosomal protein L7a yes yes 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 33.077 33.027 3 8.5217E-09 9870 20211116_3429_TMUAki_TMT10x_P_F2 125.75 100.89 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10723 1358 9957 56326;56327;56328;56329 68279;68280;68281;68282 68280 4 KVAPQNDSFGTQLPPMHQQQR Unmodified 2406.1863 0.186261 2408 Q96AE4-2 FUBP1 Far upstream element-binding protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 34.332 34.32 4 1.4893E-19 9677 20211116_3428_TMUAki_TMT10x_P_F1 153.25 138.09 1091900 1648300 5077 2195300 2371700 2004100 1244700 1420900 1334000 1140000 1533300 1016600 1540100 100940 2198100 2245300 2040300 1324300 1465700 1360300 1124900 1472900 4 4 2 4 4 4 4 4 4 4 4 683160 1042100 5077 1331800 2122700 1771500 1039600 936190 869820 738850 989200 636070 973440 74092 1344700 2008000 1758800 1105900 988100 896560 729730 950550 3 3 2 3 3 3 3 3 3 3 3 408740 606240 0 863510 249010 232560 205130 484660 464230 401120 544100 380540 566650 26843 853320 237350 281500 218390 477550 463770 395200 522400 1 1 0 1 1 1 1 1 1 1 1 419410000 333450000 85960000 10724 2408 9958 56330;56331;56332 68283;68284;68285;68286 68284 4 KVAPQNDSFGTQLPPMHQQQR Oxidation (M) 2422.1812 0.18117562 2408 Q96AE4-2 FUBP1 Far upstream element-binding protein 1 yes yes 0 0 1 1 By MS/MS 8 0 1 1 24.056 24.155 4 0.0073116 4331 20211116_3436_TMUAki_TMT10x_P_F8 48.053 33.479 109840 155700 730.34 190390 261030 271810 144850 193090 200570 129340 201710 102270 145420 7639.9 192990 247410 270110 154730 198380 201650 128950 194550 2 2 1 2 2 2 2 2 2 2 2 109840 155700 730.34 190390 261030 271810 144850 193090 200570 129340 201710 102270 145420 7639.9 192990 247410 270110 154730 198380 201650 128950 194550 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31617000 31617000 0 10725 2408 9958 56333 68287;68288 68287 2743 2 KVAVATPAK Unmodified 883.5491 0.54910224 729 P19338 NCL Nucleolin yes yes 0 0 0 1 By MS/MS 1 0 1 1 33.47 33.481 3 0.0013212 9319 20211116_3439_TMUAki_TMT10x_S_F1 78.488 59.51 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10726 729 9959 56334 68289 68289 1 KVDAGGK Unmodified 673.37589 0.3758889 1499 Q02878 RPL6 60S ribosomal protein L6 yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 28.774 28.761 3 0.079829 6233 20211116_3433_TMUAki_TMT10x_P_F5 45.137 23.63 601990 834160 1897.3 566710 444490 782060 399850 371950 336170 425270 527210 560530 777360 49472 600250 425190 774210 405940 400470 351560 413150 502660 1 1 1 1 1 1 1 1 1 1 1 601990 834160 1897.3 566710 444490 782060 399850 371950 336170 425270 527210 560530 777360 49472 600250 425190 774210 405940 400470 351560 413150 502660 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13568000 13568000 0 10727 1499 9960 56335;56336 68290 68290 1 KVDDDLGTIESLEEAK Unmodified 1760.868 0.86798936 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 1 By MS/MS 1 0 1 1 64.551 64.551 3 7.9092E-08 19975 20211116_3428_TMUAki_TMT10x_P_F1 117.67 102.14 6565000 11622000 33332 11353000 10292000 16524000 9916000 10143000 9489600 9577100 9342700 6112700 10843000 592560 11678000 9858500 16371000 10065000 10618000 9667500 9376800 9017100 2 2 1 2 2 2 2 2 2 2 2 6565000 11622000 33332 11353000 10292000 16524000 9916000 10143000 9489600 9577100 9342700 6112700 10843000 592560 11678000 9858500 16371000 10065000 10618000 9667500 9376800 9017100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 428040000 428040000 0 10728 935 9961 56337 68291;68292 68291 2 KVDEAIALFQK Unmodified 1260.7078 0.70778773 820 P26640 VARS Valine--tRNA ligase yes yes 0 0 0 1 By MS/MS By MS/MS 5.75 2.77 1 2 1 2 2 62.719 63.011 3 5.9737E-08 20525 20211116_3435_TMUAki_TMT10x_P_F7 120.53 94.486 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10729 820 9962 56338;56339;56340;56341 68293;68294;68295;68296 68294 4 KVDQPPEAK Unmodified 1010.5397 0.53965977 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 31.272 31.257 3 0.00078647 6897 20211116_3431_TMUAki_TMT10x_P_F4 98.737 70.564 1473700 2479200 10711 2075600 2427900 2848700 1737200 1282400 1442200 1302900 1838900 1372300 2311900 144870 2157500 2311200 2819200 1789100 1383500 1494200 1271600 1761600 2 2 1 2 2 2 2 2 2 2 2 1473700 2479200 10711 2075600 2427900 2848700 1737200 1282400 1442200 1302900 1838900 1372300 2311900 144870 2157500 2311200 2819200 1789100 1383500 1494200 1271600 1761600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 62787000 62787000 0 10730 2345 9963 56342;56343 68297;68298 68297 2 KVDSEYIATVCGSFR Unmodified 1730.8298 0.82977013 523 P06746 POLB DNA polymerase beta yes yes 0 0 0 1 By MS/MS 8 0 1 1 54.01 54.127 3 0.0070325 15832 20211116_3436_TMUAki_TMT10x_P_F8 59.252 22.21 2573700 4145600 17579 3871500 3889200 5704000 3253900 3583700 3408400 3104000 3612200 2396500 3867300 248180 3996300 3714200 5650200 3338600 3736300 3468000 3051300 3478200 1 1 1 1 1 1 1 1 1 1 1 2573700 4145600 17579 3871500 3889200 5704000 3253900 3583700 3408400 3104000 3612200 2396500 3867300 248180 3996300 3714200 5650200 3338600 3736300 3468000 3051300 3478200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 492970000 492970000 0 10731 523 9964 56344 68299 68299 1 KVDSSVLGSLSSVPLTGFSFSPGNSSLFGK Unmodified 3000.5444 0.54441738 3162 Q9UKX7;Q9UKX7-2 NUP50 Nuclear pore complex protein Nup50 yes no 0 0 0 1 By MS/MS 6 0 2 2 79.685 79.677 3;4 4.8565E-20 25990 20211116_3445_TMUAki_TMT10x_S_F6 123.21 105.57 5514400 9359500 112320 9521200 6646500 5756500 7221700 4195000 3742700 5072200 6132000 5135100 8734100 561140 9645400 6393200 6061400 7187500 4370300 4044500 4917600 5841300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5514400 9359500 112320 9521200 6646500 5756500 7221700 4195000 3742700 5072200 6132000 5135100 8734100 561140 9645400 6393200 6061400 7187500 4370300 4044500 4917600 5841300 2 2 1 2 2 2 2 2 2 2 2 3791900000 0 3791900000 10732 3162 9965 56345;56346 68300;68301 68301 2 KVDWLTEK Unmodified 1017.5495 0.54949617 1277;973;1697 P38919;P60842;P60842-2;Q14240;Q14240-2 EIF4A3;EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed;Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 0 0 0 1 By MS/MS 7 0 1 1 49.635 50.285 3 0.037773 15422 20211116_3435_TMUAki_TMT10x_P_F7 57.347 24.085 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10733 973;1277;1697 9966 56347 68302 68302 1 KVEAAHCAACDLFIPMQFGIIQK Unmodified 2646.3121 0.31205514 3177 Q9ULX6;Q9ULX6-2 AKAP8L A-kinase anchor protein 8-like yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 74.47 74.274 4 4.6601E-11 27070 20211116_3441_TMUAki_TMT10x_S_F3 106.69 92.382 4336600 7367100 21660 6968300 4588600 5811100 5529500 3017400 2883600 3006600 4553800 4037800 6872800 364470 7119600 4423500 5928500 5477700 3208600 3108600 2936800 4341200 2 2 1 2 2 2 2 2 2 2 2 2947400 4822100 0 4621600 2755700 4535000 3663200 1940900 1872900 1910800 2903200 2744100 4498800 222890 4727600 2663900 4567000 3612800 2103400 2020200 1867400 2768700 1 1 0 1 1 1 1 1 1 1 1 1389200 2545000 21660 2346700 1832800 1276100 1866300 1076600 1010700 1095800 1650600 1293700 2374000 141580 2392000 1759600 1361600 1864800 1105200 1088400 1069400 1572500 1 1 1 1 1 1 1 1 1 1 1 636470000 393690000 242780000 10734 3177 9967 56348;56349 68303;68304 68304 2 KVEAAHCAACDLFIPMQFGIIQK Oxidation (M) 2662.307 0.30696976 3177 Q9ULX6;Q9ULX6-2 AKAP8L A-kinase anchor protein 8-like yes no 0 0 1 1 By MS/MS 2 0 1 1 67.275 67.058 4 3.0561E-08 21281 20211116_3440_TMUAki_TMT10x_S_F2 100.19 86.32 1804800 3163500 24688 2936300 2761800 2477700 2401800 2985700 2515600 2511100 2817400 1680600 2951000 186040 3004700 2640500 2563900 2458600 2995900 2564900 2472000 2708500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1804800 3163500 24688 2936300 2761800 2477700 2401800 2985700 2515600 2511100 2817400 1680600 2951000 186040 3004700 2640500 2563900 2458600 2995900 2564900 2472000 2708500 1 1 1 1 1 1 1 1 1 1 1 687920000 0 687920000 10735 3177 9967 56350 68305 68305 3176 1 KVEDLFLTFAK Unmodified 1309.7282 0.72818882 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 1 1 1 1 77.335 77.309 3 1.9876E-14 25154 20211116_3428_TMUAki_TMT10x_P_F1 148.96 124.7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10736 1663 9968 56351;56352 68306;68307 68306 2 KVEEAEPEEFVVEK Unmodified 1660.8196 0.8195826 1607 Q13185 CBX3 Chromobox protein homolog 3 yes yes 0 0 0 1 By MS/MS By MS/MS 2.86 1.25 2 4 4 2 2 7 7 51.306 51.209 3;4 1.358E-29 16504 20211116_3430_TMUAki_TMT10x_P_F3 207.85 178.16 72438000 114810000 953650 164420000 122910000 109080000 71856000 91401000 100930000 77728000 101000000 67452000 107320000 7301900 163410000 116600000 114140000 76456000 93413000 101410000 76477000 97429000 20 20 12 20 20 20 20 20 20 20 20 35060000 52844000 516530 76264000 99163000 86757000 49710000 44657000 48425000 38127000 46335000 32647000 49396000 4172600 76304000 93863000 86789000 52969000 47333000 49246000 37506000 44763000 10 10 6 10 10 10 10 10 10 10 10 37378000 61968000 437130 88158000 23744000 22322000 22146000 46744000 52507000 39601000 54665000 34804000 57921000 3129300 87101000 22741000 27350000 23487000 46080000 52165000 38971000 52667000 10 10 6 10 10 10 10 10 10 10 10 14816000000 9696600000 5119800000 10737 1607 9969 56353;56354;56355;56356;56357;56358;56359;56360;56361;56362;56363;56364;56365;56366 68308;68309;68310;68311;68312;68313;68314;68315;68316;68317;68318;68319;68320;68321;68322;68323;68324;68325;68326;68327 68312 20 KVEEEDEEEEEEEEEEEEEEDE Unmodified 2797.9945 0.99450342 182 O15347 HMGB3 High mobility group protein B3 yes yes 0 0 0 1 By MS/MS 1 0 1 1 44.136 44.136 3 1.1169E-26 11620 20211116_3428_TMUAki_TMT10x_P_F1 170.53 170.53 268910 360960 10654 1142600 2032900 1049100 525800 193800 443690 144230 566130 250460 339730 56930 1109100 1912000 1055300 609610 238720 459320 142910 542330 1 1 1 1 1 1 1 1 1 1 1 268910 360960 10654 1142600 2032900 1049100 525800 193800 443690 144230 566130 250460 339730 56930 1109100 1912000 1055300 609610 238720 459320 142910 542330 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 179340000 179340000 0 10738 182 9970 56367 68328 68328 1 KVEELQACVETAR Unmodified 1531.7664 0.7664416 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 42.325 42.444 3 1.2478E-19 11630 20211116_3442_TMUAki_TMT10x_S_F4 195.2 168.1 33117000 52220000 147350 54092000 52775000 56441000 37750000 37945000 36167000 35155000 43216000 30835000 48734000 2964600 55086000 50222000 56937000 39028000 39430000 37113000 34449000 41471000 13 13 9 13 13 13 13 13 13 13 13 24508000 37652000 106570 39492000 43514000 47213000 28698000 25667000 24741000 24701000 30384000 22819000 35140000 2234900 40274000 41346000 47137000 29762000 27155000 25543000 24164000 29136000 7 7 5 7 7 7 7 7 7 7 7 8608800 14568000 40783 14600000 9261600 9227200 9051500 12278000 11426000 10454000 12832000 8015700 13594000 729670 14812000 8875600 9800000 9265900 12275000 11570000 10285000 12335000 6 6 4 6 6 6 6 6 6 6 6 2125400000 1432100000 693310000 10739 1741 9971 56368;56369;56370;56371;56372;56373 68329;68330;68331;68332;68333;68334;68335;68336;68337;68338;68339;68340;68341 68336 13 KVEEVLEEEEEEYVVEK Unmodified 2108.0049 0.004876771 1451 P83916 CBX1 Chromobox protein homolog 1 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 4 2 2 70.99 70.916 3;4 2.6149E-21 22448 20211116_3428_TMUAki_TMT10x_P_F1 160.97 140.88 69777000 124520000 449630 117030000 74513000 115890000 80499000 73487000 80795000 77631000 89037000 64967000 116160000 5626700 119910000 71582000 117170000 81350000 76980000 82475000 75647000 85636000 9 9 6 9 9 9 9 9 9 9 9 40741000 70471000 308150 70610000 46076000 86569000 51299000 46528000 49357000 47034000 52065000 37934000 65758000 3495000 72262000 44314000 86306000 51701000 49343000 50393000 45915000 50142000 6 6 4 6 6 6 6 6 6 6 6 29036000 54045000 141480 46425000 28437000 29317000 29201000 26959000 31439000 30597000 36971000 27033000 50401000 2131700 47644000 27268000 30869000 29649000 27638000 32082000 29733000 35494000 3 3 2 3 3 3 3 3 3 3 3 9503600000 5728000000 3775500000 10740 1451 9972 56374;56375;56376;56377 68342;68343;68344;68345;68346;68347;68348;68349;68350 68342 9 KVEEVVYDLSIR Unmodified 1448.7875 0.78749461 1818 Q15631 TSN Translin yes yes 0 0 0 1 By MS/MS By MS/MS 4 1.41 2 2 2 2 2 5 5 63.411 63.301 3 6.7372E-12 20285 20211116_3442_TMUAki_TMT10x_S_F4 167.32 113.88 90455000 140790000 631800 143890000 97143000 129150000 97426000 104470000 110460000 108610000 113110000 84224000 131390000 7791800 146360000 93165000 131920000 99212000 107580000 111890000 105900000 109030000 14 14 8 14 14 14 14 14 14 14 14 36209000 54911000 375550 55096000 43193000 73841000 41238000 40990000 44538000 43349000 44456000 33716000 51238000 3374800 56474000 41385000 73330000 42034000 43404000 45162000 42240000 42888000 6 6 4 6 6 6 6 6 6 6 6 54246000 85883000 256260 88799000 53950000 55305000 56188000 63477000 65919000 65261000 68649000 50508000 80149000 4417000 89883000 51781000 58591000 57178000 64180000 66732000 63663000 66138000 8 8 4 8 8 8 8 8 8 8 8 7653600000 4368300000 3285300000 10741 1818 9973 56378;56379;56380;56381;56382;56383;56384;56385;56386;56387 68351;68352;68353;68354;68355;68356;68357;68358;68359;68360;68361;68362;68363;68364 68359 14 KVEHEISEGNVATAAAAALASAATK Unmodified 2409.25 0.24996669 2379 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 64.949 65.198 4 6.7728E-12 20328 20211116_3436_TMUAki_TMT10x_P_F8 114.74 99.646 6000600 10350000 0 9634500 6040800 9290700 6632000 7289600 7054600 7301100 7283500 5586300 9654600 398050 9874200 5800600 9441000 6709300 7512900 7166500 7130200 7019100 2 2 0 2 2 2 2 2 2 2 2 3352500 5552100 0 4807100 3172900 6672800 4043100 3712600 3757300 3795800 3966400 3121400 5177900 256220 4984500 3063000 6616200 4046800 3926600 3842300 3703800 3819800 1 1 0 1 1 1 1 1 1 1 1 2648100 4797500 0 4827400 2867900 2617900 2588800 3577100 3297300 3505300 3317100 2465000 4476700 141830 4889600 2737600 2824800 2662500 3586400 3324200 3426400 3199300 1 1 0 1 1 1 1 1 1 1 1 2315300000 1587800000 727570000 10742 2379 9974 56388;56389;56390 68365;68366 68365 2 KVENEDMNKDQILLEK Oxidation (M) 1960.9776 0.97755658 1752 Q15019;Q15019-2;Q15019-3 SEPT2 Septin-2 yes no 0 0 1 2 By MS/MS By MS/MS 5 0 2 1 1 45.31 45.458 4 0.013074 11746 20211116_3444_TMUAki_TMT10x_S_F5 50.787 36.915 3556000 6380200 142500 6998300 8601500 7976800 5060200 6581500 8317900 5258700 6863000 3312000 5955700 498280 7110400 8167100 8034500 5418800 6722400 8267900 5190500 6665500 2 2 2 2 2 2 2 2 2 2 2 1796000 3262600 84522 3493000 6786800 6259300 3323700 3196100 4242100 2698500 3392300 1672900 3045200 297570 3588500 6425600 6137100 3580800 3389300 4245200 2656000 3298800 1 1 1 1 1 1 1 1 1 1 1 1760000 3117600 57975 3505300 1814700 1717500 1736500 3385300 4075800 2560200 3470700 1639100 2910500 200710 3521800 1741500 1897400 1837900 3333100 4022600 2534500 3366800 1 1 1 1 1 1 1 1 1 1 1 556280000 332160000 224120000 10743 1752 9975 56391;56392 68367;68368 68368 2358 2 KVEQDTETK Unmodified 1076.535 0.53496832 3032 Q9NZI8;Q9NZI8-2 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes no 0 0 0 1 By MS/MS 4 0 1 1 29.352 29.391 3 0.0018474 6137 20211116_3431_TMUAki_TMT10x_P_F4 81.625 50.203 274880 408050 0 352480 298580 403370 239260 198630 214740 200060 308190 255930 380550 21993 364270 284730 403190 245030 212330 222850 195330 294410 1 1 0 1 1 1 1 1 1 1 1 274880 408050 0 352480 298580 403370 239260 198630 214740 200060 308190 255930 380550 21993 364270 284730 403190 245030 212330 222850 195330 294410 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8626200 8626200 0 10744 3032 9976 56393 68369 68369 1 KVESLQEEIAFLK Unmodified 1532.845 0.84500949 561 P08670 VIM Vimentin yes yes 0 0 0 1 By MS/MS By MS/MS 5.5 1.12 2 2 2 2 4 4 69.082 69.166 3 2.3608E-09 22244 20211116_3431_TMUAki_TMT10x_P_F4 133.48 103.79 119600000 196650000 1394300 203530000 142930000 160460000 135430000 100440000 104640000 106920000 141360000 111360000 183520000 10454000 206500000 136900000 164770000 136810000 105350000 109100000 104160000 135230000 11 11 7 11 11 11 11 11 11 11 11 61426000 94569000 811570 100330000 75783000 104230000 74691000 48712000 50454000 51975000 69257000 57199000 88265000 5934800 102000000 72678000 104700000 75069000 52426000 53056000 50627000 66227000 5 5 4 5 5 5 5 5 5 5 5 58172000 102080000 582730 103200000 67142000 56226000 60741000 51731000 54185000 54946000 72107000 54165000 95256000 4518900 104500000 64220000 60076000 61744000 52919000 56047000 53530000 69004000 6 6 3 6 6 6 6 6 6 6 6 9083400000 4693900000 4389600000 10745 561 9977 56394;56395;56396;56397;56398;56399;56400;56401 68370;68371;68372;68373;68374;68375;68376;68377;68378;68379;68380 68370 11 KVESLQEEIAFLKK Unmodified 1660.94 0.93997251 561 P08670 VIM Vimentin yes yes 0 0 0 2 By MS/MS By MS/MS 7 0.756 2 3 2 4 3 64.254 64.523 3;4 3.4033E-29 20039 20211116_3436_TMUAki_TMT10x_P_F8 199.58 181.47 75949000 132550000 1234400 126040000 109600000 141390000 90668000 113890000 116620000 107790000 109880000 70725000 123660000 7911500 129270000 104690000 142470000 93761000 117000000 117270000 105520000 106210000 9 9 8 9 9 9 9 9 9 9 9 39209000 65318000 403330 62271000 66575000 98897000 54329000 58175000 61873000 55467000 55654000 36511000 60938000 4003000 64289000 63551000 97575000 55982000 61122000 62395000 54284000 53880000 4 4 3 4 4 4 4 4 4 4 4 36740000 67232000 831100 63769000 43023000 42494000 36339000 55715000 54746000 52321000 54229000 34214000 62722000 3908500 64982000 41135000 44900000 37779000 55878000 54871000 51239000 52329000 5 5 5 5 5 5 5 5 5 5 5 8412000000 4735500000 3676500000 10746 561 9978 56402;56403;56404;56405;56406;56407;56408 68381;68382;68383;68384;68385;68386;68387;68388;68389 68384 9 KVESLWPIFR Unmodified 1273.7183 0.71829284 996 P41223;P41223-2 BUD31 Protein BUD31 homolog yes no 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 67.138 67.092 3 2.079E-07 23294 20211116_3430_TMUAki_TMT10x_P_F3 107.85 65.291 14111000 21244000 0 22584000 18792000 19735000 19289000 8958100 7822800 10910000 16261000 13139000 19828000 1160400 22903000 18027000 20039000 19185000 9710300 8759600 10575000 15425000 2 2 0 2 2 2 2 2 2 2 2 8523700 12552000 0 12779000 11361000 14649000 12402000 5004400 4772400 6274300 9416000 7935900 11713000 675600 13049000 10915000 14591000 12289000 5612900 5353800 6075500 8939600 1 1 0 1 1 1 1 1 1 1 1 5587700 8692500 0 9805400 7431100 5086600 6887000 3953700 3050400 4636000 6845200 5202700 8115200 484830 9854000 7111400 5447500 6895400 4097400 3405800 4499600 6485900 1 1 0 1 1 1 1 1 1 1 1 1200600000 670220000 530370000 10747 996 9979 56409;56410;56411 68390;68391;68392 68390 3 KVETDHIVAAVGLEPNVELAK Unmodified 2231.2161 0.21614737 448 O95831;O95831-3;O95831-2;O95831-5 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 59.671 60.088 4 6.5342E-14 17965 20211116_3445_TMUAki_TMT10x_S_F6 127.58 102.79 26716000 44822000 356790 42851000 33183000 42308000 29294000 38211000 36285000 36584000 37323000 24878000 41816000 2638000 43846000 31741000 43042000 30134000 39008000 36645000 35797000 35972000 5 5 5 5 5 5 5 5 5 5 5 9499900 15482000 82122 14003000 13711000 24164000 11640000 14505000 14511000 14141000 13843000 8845900 14441000 923120 14542000 13100000 23773000 12004000 15224000 14613000 13826000 13374000 2 2 2 2 2 2 2 2 2 2 2 17216000 29340000 274660 28848000 19472000 18143000 17654000 23706000 21774000 22443000 23480000 16032000 27375000 1714900 29304000 18642000 19269000 18130000 23784000 22031000 21971000 22597000 3 3 3 3 3 3 3 3 3 3 3 4355800000 1875200000 2480600000 10748 448 9980 56412;56413;56414 68393;68394;68395;68396;68397 68395 5 KVFDPVPVGVTK Unmodified 1284.7442 0.74417324 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 1 By MS/MS By MS/MS 5 3 2 2 2 2 53.676 53.57 3 1.1354E-06 15053 20211116_3447_TMUAki_TMT10x_S_F8 105.99 85.529 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10749 1546 9981 56415;56416;56417;56418 68398;68399;68400;68401 68401 4 KVFIEDVSR Unmodified 1091.5975 0.597509 476 P00966 ASS1 Argininosuccinate synthase yes yes 0 0 0 1 By MS/MS 6 0 1 1 42.281 42.446 3 0.0014725 10762 20211116_3445_TMUAki_TMT10x_S_F6 83.081 50.863 691950 1275500 6875.6 1418600 552260 922840 857890 1199600 1529500 1303600 1264000 644330 1190700 61819 1429700 537640 976930 875000 1208800 1517200 1268900 1227500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 691950 1275500 6875.6 1418600 552260 922840 857890 1199600 1529500 1303600 1264000 644330 1190700 61819 1429700 537640 976930 875000 1208800 1517200 1268900 1227500 1 1 1 1 1 1 1 1 1 1 1 37346000 0 37346000 10750 476 9982 56419 68402 68402 1 KVGDDIAK Unmodified 844.46543 0.46543219 864 P30050 RPL12 60S ribosomal protein L12 yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 33.422 33.467 3 0.0037923 8224 20211116_3433_TMUAki_TMT10x_P_F5 91.584 47.137 5233300 8154900 2963.4 6675400 6226500 8255800 5599500 4025500 4270900 3968000 5614600 4872700 7603800 448210 6938100 5954500 8217900 5671500 4304600 4450800 3877800 5374700 3 3 2 3 3 3 3 3 3 3 3 4926600 7573100 2687.3 6211200 5827800 7952900 5217500 3757500 3998900 3695400 5257300 4587100 7061500 421230 6458700 5572600 7900200 5286500 4030300 4166100 3611700 5032600 2 2 1 2 2 2 2 2 2 2 2 306750 581740 276.12 464180 398650 302890 382080 267960 272070 272610 357370 285610 542390 26976 479430 381850 317720 385020 274340 284620 266060 342100 1 1 1 1 1 1 1 1 1 1 1 140840000 124280000 16560000 10751 864 9983 56420;56421;56422 68403;68404;68405 68404 3 KVGFEVEK Unmodified 934.51238 0.51238239 3073 Q9UBB4;Q9UBB4-2 ATXN10 Ataxin-10 yes no 0 0 0 1 By MS/MS 6 0 1 1 40.854 41.018 3 0.029689 10215 20211116_3445_TMUAki_TMT10x_S_F6 60.102 13.944 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10752 3073 9984 56423 68406 68406 1 KVGIVGK Unmodified 699.46431 0.46430998 1313 P61513 RPL37A 60S ribosomal protein L37a yes yes 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 32.693 32.641 3 0.0078697 8159 20211116_3428_TMUAki_TMT10x_P_F1 82.671 35.604 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10753 1313 9985 56424;56425;56426;56427 68407;68408;68409;68410 68407 4 KVGLIAAR Unmodified 826.53887 0.53887191 1384 P62917 RPL8 60S ribosomal protein L8 yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 1.12 1 1 1 1 3 1 34.866 34.711 3 0.0034314 9374 20211116_3429_TMUAki_TMT10x_P_F2 93.429 55.701 2052300 3843300 8643 3243500 3814400 4705800 2513600 3582400 3515700 2737700 3166100 1910900 3584000 202880 3373100 3625200 4678500 2648700 3673700 3520400 2708600 3065000 2 2 2 2 2 2 2 2 2 2 2 1217100 2196500 5415.7 1930900 2997000 4141700 1942400 2072200 2066100 1604600 1829900 1133300 2048600 130880 2021700 2847400 4036400 2029200 2197300 2088100 1586400 1772600 1 1 1 1 1 1 1 1 1 1 1 835160 1646800 3227.3 1312600 817440 564120 571190 1510200 1449600 1133100 1336100 777640 1535400 72000 1351400 777800 642110 619450 1476400 1432300 1122200 1292400 1 1 1 1 1 1 1 1 1 1 1 430520000 157490000 273040000 10754 1384 9986 56428;56429;56430;56431 68411;68412;68413 68411 3 KVGTFFSEVKPAGPTVEQQGEMAR Oxidation (M) 2608.2955 0.29553668 1229 P54886;P54886-2 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes no 0 0 1 2 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 51.403 51.548 4 1.7879E-11 14219 20211116_3447_TMUAki_TMT10x_S_F8 112.8 104.85 23115000 40064000 66312 40721000 32365000 45586000 27651000 41974000 42441000 37724000 33805000 21521000 37386000 1907500 41568000 30906000 46059000 28752000 42731000 42223000 37018000 32878000 8 8 4 8 8 8 8 8 8 8 8 14487000 23964000 11350 25209000 23364000 36686000 20871000 25354000 25912000 23062000 20366000 13487000 22365000 1174700 25801000 22330000 36411000 21457000 26281000 25944000 22618000 19818000 4 4 2 4 4 4 4 4 4 4 4 8627900 16100000 54963 15512000 9000800 8900000 6779800 16620000 16529000 14662000 13439000 8033500 15021000 732800 15767000 8575400 9648000 7295000 16450000 16279000 14400000 13060000 4 4 2 4 4 4 4 4 4 4 4 4726100000 2341600000 2384500000 10755 1229 9987 56432;56433;56434;56435;56436;56437 68414;68415;68416;68417;68418;68419;68420;68421 68421 1649 8 KVGYTPDWIFLLR Unmodified 1606.8871 0.88714908 1471 Q00610;Q00610-2;P53675;P53675-2 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 77.711 77.711 3 1.3892E-14 24872 20211116_3444_TMUAki_TMT10x_S_F5 166.03 146.25 59872000 89783000 265170 94772000 64172000 64496000 73568000 26584000 19624000 32758000 56390000 55748000 83796000 5208400 95878000 61779000 66720000 72462000 29127000 23629000 31739000 53259000 4 4 3 4 4 4 4 4 4 4 4 31409000 45620000 134760 48000000 31115000 43491000 38735000 12881000 8866200 16565000 28249000 29246000 42577000 2725500 48733000 30034000 43896000 37967000 14751000 11015000 16026000 26651000 2 2 2 2 2 2 2 2 2 2 2 28463000 44163000 130410 46772000 33057000 21006000 34834000 13703000 10758000 16194000 28141000 26503000 41218000 2482900 47145000 31745000 22824000 34495000 14375000 12615000 15713000 26608000 2 2 1 2 2 2 2 2 2 2 2 6764800000 3572800000 3191900000 10756 1471 9988 56438;56439;56440;56441 68422;68423;68424;68425 68425 4 KVHPAVVIR Unmodified 1017.6447 0.64473396 1369 P62829 RPL23 60S ribosomal protein L23 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 30.59 30.44 3 1.2204E-05 7710 20211116_3429_TMUAki_TMT10x_P_F2 128 79.434 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10757 1369 9989 56442;56443;56444 68426;68427;68428 68426 3 KVHVIFNYK Unmodified 1146.655 0.6549643 832 P27797 CALR Calreticulin yes yes 0 0 0 1 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 42.25 42.193 3 7.7189E-06 11175 20211116_3431_TMUAki_TMT10x_P_F4 145.17 105.17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10758 832 9990 56445;56446;56447 68429;68430;68431 68429 3 KVICIPK Unmodified 856.52044 0.52044465 669 P14550 AKR1A1 Alcohol dehydrogenase [NADP(+)] yes yes 0 0 0 1 By MS/MS 3 0 1 1 43.254 42.927 3 0.013636 14235 20211116_3441_TMUAki_TMT10x_S_F3 71.296 26.658 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10759 669 9991 56448 68432 68432 1 KVIGIECSSISDYAVK Unmodified 1767.9077 0.9076861 2612 Q99873;Q99873-2;Q99873-3;Q99873-5 PRMT1 Protein arginine N-methyltransferase 1 yes no 0 0 0 1 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 57.058 57.532 3 7.268E-15 17146 20211116_3436_TMUAki_TMT10x_P_F8 143.02 123.73 21350000 36354000 68790 39829000 27701000 31547000 21096000 24914000 20994000 22587000 27231000 19879000 33935000 1788600 40263000 26390000 32500000 21741000 25596000 21583000 22156000 26076000 5 5 1 5 5 5 5 5 5 5 5 9586800 15749000 68790 17435000 17195000 22114000 12594000 10602000 8713800 9533400 11380000 8926500 14702000 934800 17738000 16374000 21981000 12895000 11329000 9129200 9354800 10895000 2 2 1 2 2 2 2 2 2 2 2 11763000 20604000 0 22394000 10506000 9432700 8502100 14312000 12280000 13054000 15852000 10952000 19233000 853810 22525000 10016000 10519000 8845800 14267000 12454000 12801000 15181000 3 3 0 3 3 3 3 3 3 3 3 4022200000 2783900000 1238400000 10760 2612 9992 56449;56450;56451 68433;68434;68435;68436;68437 68434 5 KVIVDFSSPNIAK Unmodified 1416.7977 0.79766537 1218 P54136;P54136-2 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 1 By MS/MS 2 0 1 1 56.606 56.392 3 5.164E-09 16922 20211116_3440_TMUAki_TMT10x_S_F2 124.45 104.87 3183100 5300300 16868 5970700 3321100 2626200 3196500 3066300 3549500 3216500 3841500 2963900 4948300 281550 5993700 3182300 2891600 3259800 3099800 3606000 3135200 3696700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3183100 5300300 16868 5970700 3321100 2626200 3196500 3066300 3549500 3216500 3841500 2963900 4948300 281550 5993700 3182300 2891600 3259800 3099800 3606000 3135200 3696700 1 1 1 1 1 1 1 1 1 1 1 363930000 0 363930000 10761 1218 9993 56452 68438 68438 1 KVLCLAVAVGHVK Unmodified 1392.8275 0.82752571 1381 P62906 RPL10A 60S ribosomal protein L10a yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 53.63 53.812 4 1.5758E-06 15149 20211116_3444_TMUAki_TMT10x_S_F5 114.72 92.247 2210600 3946400 34622 4534900 3668500 3433600 2757800 2614400 1849100 2250900 2465600 2058600 3684600 235960 4568300 3496700 3547400 2816900 2688600 1942800 2213300 2359400 2 2 2 2 2 2 2 2 2 2 2 1092700 1898400 24604 1919800 2300000 2611500 1576500 1323300 899710 1077500 1122800 1017600 1771500 130430 1967300 2188700 2588800 1616000 1403100 952830 1062500 1076200 1 1 1 1 1 1 1 1 1 1 1 1117900 2048000 10018 2615100 1368500 822060 1181300 1291100 949360 1173400 1342700 1041000 1913100 105530 2600900 1308100 958600 1200900 1285500 989920 1150800 1283100 1 1 1 1 1 1 1 1 1 1 1 1003200000 692080000 311080000 10762 1381 9994 56453;56454;56455 68439;68440 68440 2 KVLDSFCEGLK Unmodified 1294.6591 0.65912298 53 CON__Q3SX09 yes yes 0 0 0 1 By MS/MS 8 0 1 1 56.459 56.608 3 1.9371E-07 16792 20211116_3436_TMUAki_TMT10x_P_F8 108.17 87.789 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10763 53 9995 56456 68441 68441 1 KVLIIGGGDGGVLR Unmodified 1352.814 0.81398414 735 P19623 SRM Spermidine synthase yes yes 0 0 0 1 By MS/MS By MS/MS 2.25 0.829 1 1 2 2 2 53.376 53.11 3 5.8077E-14 18393 20211116_3441_TMUAki_TMT10x_S_F3 130.72 86.408 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10764 735 9996 56457;56458;56459;56460 68442;68443;68444;68445 68445 4 KVLIQTK Unmodified 828.54329 0.54328858 1578 Q12931;Q12931-2 TRAP1 Heat shock protein 75 kDa, mitochondrial yes no 0 0 0 1 By MS/MS 2 0 1 1 36.338 36.437 3 0.0079941 8725 20211116_3440_TMUAki_TMT10x_S_F2 82.426 18.861 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10765 1578 9997 56461 68446 68446 1 KVLISDSLDPCCR Unmodified 1561.7592 0.75924773 201 O43175 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 48.71 49.264 3 1.9237E-09 15533 20211116_3446_TMUAki_TMT10x_S_F7 134.88 120.53 6564600 10875000 100870 11267000 11679000 13258000 8289800 12629000 11331000 9750200 11352000 6113000 10149000 709880 11496000 11119000 13369000 8680000 12786000 11395000 9641200 10950000 2 2 2 2 2 2 2 2 2 2 2 3093300 5135800 56938 5246100 8166100 9848900 5037200 5778400 5573600 4869000 5549600 2880600 4792600 380570 5413000 7754900 9658000 5289600 6053300 5645900 4792800 5354300 1 1 1 1 1 1 1 1 1 1 1 3471300 5738800 43928 6021100 3512800 3409000 3252600 6850900 5756900 4881200 5801900 3232400 5355900 329310 6083500 3364300 3711300 3390400 6732800 5748700 4848400 5595500 1 1 1 1 1 1 1 1 1 1 1 648330000 342530000 305810000 10766 201 9998 56462;56463;56464 68447;68448;68449 68449 3 KVLISDSLDPCCRK Unmodified 1689.8542 0.85421075 201 O43175 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 2 By MS/MS 8 0 1 1 44.969 44.939 4 3.8894E-07 11586 20211116_3447_TMUAki_TMT10x_S_F8 120.53 91.946 1573200 2850800 3992.8 2763000 2656000 2195500 1887400 4320200 3395500 3301400 3114400 1464800 2659700 142710 2816500 2527200 2319400 2001400 4254800 3378400 3266300 3013000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1573200 2850800 3992.8 2763000 2656000 2195500 1887400 4320200 3395500 3301400 3114400 1464800 2659700 142710 2816500 2527200 2319400 2001400 4254800 3378400 3266300 3013000 2 2 1 2 2 2 2 2 2 2 2 83407000 0 83407000 10767 201 9999 56465 68450;68451 68450 2 KVLYLPSFFTYAK Unmodified 1575.8701 0.87010203 3034 Q9NZJ7;Q9NZJ7-2 MTCH1 Mitochondrial carrier homolog 1 yes no 0 0 0 1 By MS/MS 8 0 1 1 77.309 77.316 3 0.00022522 25324 20211116_3436_TMUAki_TMT10x_P_F8 85.457 70.558 3989000 6548200 131170 5923300 3962100 6946800 5425300 4024800 3406500 3896700 4805700 3715200 6107800 452590 6102200 3843800 6948100 5364100 4235700 3603500 3811000 4592600 1 1 1 1 1 1 1 1 1 1 1 3989000 6548200 131170 5923300 3962100 6946800 5425300 4024800 3406500 3896700 4805700 3715200 6107800 452590 6102200 3843800 6948100 5364100 4235700 3603500 3811000 4592600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 891560000 891560000 0 10768 3034 10000 56466 68452 68452 1 KVMHLQDVEVK Oxidation (M) 1340.7122 0.71222118 2746 Q9C037;Q9C037-2;Q9C037-3 TRIM4 E3 ubiquitin-protein ligase TRIM4 yes no 0 0 1 1 By MS/MS 5 0 1 1 53.705 53.886 3 0.043965 15132 20211116_3444_TMUAki_TMT10x_S_F5 42.556 8.1772 5313900 8671500 166120 10778000 4127100 4760700 5121700 5343300 4887700 5209000 6358600 4949000 8099300 578750 10757000 3992300 5234100 5135900 5399300 5034800 5092900 6088400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5313900 8671500 166120 10778000 4127100 4760700 5121700 5343300 4887700 5209000 6358600 4949000 8099300 578750 10757000 3992300 5234100 5135900 5399300 5034800 5092900 6088400 1 1 1 1 1 1 1 1 1 1 1 180940000 0 180940000 10769 2746 10001 56467 68453 68453 2928 1 KVMVLDFVTPTPLGTR Oxidation (M) 1788.9808 0.98079147 1871 Q16881;Q16881-3;Q16881-4;Q16881-5;Q16881-2;Q16881-6 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 0 0 1 1 By MS/MS By MS/MS 3 0.707 1 2 1 3 1 66.46 66.217 3 6.2209E-08 23775 20211116_3441_TMUAki_TMT10x_S_F3 116.96 103.55 20768000 34387000 244050 31116000 26379000 46630000 26835000 31505000 31431000 32793000 29184000 19339000 32075000 2010500 32206000 25319000 46207000 27339000 32834000 31695000 31974000 28223000 5 5 3 5 5 5 5 5 5 5 5 17332000 27989000 244050 24829000 19992000 41379000 21526000 25077000 24923000 26806000 23440000 16139000 26105000 1697700 25800000 19222000 40767000 21859000 26371000 25153000 26109000 22657000 4 4 3 4 4 4 4 4 4 4 4 3436800 6398700 0 6287200 6387500 5251000 5309500 6427500 6508500 5987100 5744500 3199900 5970300 312840 6406400 6096600 5439700 5479200 6462500 6541700 5865500 5565200 1 1 0 1 1 1 1 1 1 1 1 4227500000 2850800000 1376800000 10770 1871 10002 56468;56469;56470;56471 68454;68455;68456;68457;68458 68458 2485 5 KVMVLDFVTPTPLGTR Unmodified 1772.9859 0.98587685 1871 Q16881;Q16881-3;Q16881-4;Q16881-5;Q16881-2;Q16881-6 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 71.966 71.917 3 3.7324E-11 23369 20211116_3431_TMUAki_TMT10x_P_F4 138.08 123.29 12513000 20305000 248020 20485000 15825000 14991000 16370000 9343100 7933700 9735100 14636000 11653000 18947000 1314900 20803000 15202000 15484000 16315000 9796200 8678100 9491600 13911000 3 3 3 3 3 3 3 3 3 3 3 4794300 7464000 59052 7794600 5371300 7693200 6370600 4088500 3283200 3746800 5403400 4464400 6965900 460600 7926900 5179000 7762600 6314200 4328600 3550500 3673400 5146800 1 1 1 1 1 1 1 1 1 1 1 7718500 12841000 188970 12690000 10454000 7298100 9999000 5254600 4650400 5988300 9232800 7188100 11981000 854340 12876000 10023000 7721500 10001000 5467600 5127700 5818200 8764700 2 2 2 2 2 2 2 2 2 2 2 1762200000 824350000 937800000 10771 1871 10002 56472;56473;56474 68459;68460;68461;68462 68460 4 KVNAEGSVDSVFSQVCTHLDALK Unmodified 2503.2377 0.23768745 474 P00568 AK1 Adenylate kinase isoenzyme 1 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 71.735 72.009 4 9.0851E-28 24914 20211116_3446_TMUAki_TMT10x_S_F7 163.72 144.34 14605000 27464000 238410 21078000 20398000 29909000 21089000 21974000 20120000 22288000 22742000 13600000 25603000 1511300 22086000 19590000 29747000 21325000 22751000 20604000 21755000 21857000 4 4 3 4 4 4 4 4 4 4 4 7332600 14089000 210030 10548000 8127700 17888000 10344000 10476000 10064000 10807000 11385000 6828900 13134000 814800 11121000 7861700 17604000 10367000 11035000 10298000 10541000 10942000 2 2 2 2 2 2 2 2 2 2 2 7272300 13375000 28377 10530000 12270000 12021000 10745000 11498000 10056000 11481000 11357000 6771400 12470000 696540 10966000 11728000 12143000 10958000 11716000 10307000 11214000 10915000 2 2 1 2 2 2 2 2 2 2 2 2479300000 1341600000 1137700000 10772 474 10003 56475;56476 68463;68464;68465;68466 68465 4 KVNIDFEPFKPINTSLYLCDNK Unmodified 2654.3414 0.34142424 1360 P62495;P62495-2 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 0 0 0 2 By MS/MS 2 0 1 1 75.002 74.932 4 2.0963E-14 24484 20211116_3440_TMUAki_TMT10x_S_F2 136.64 123.05 2686200 5067200 95661 5871700 2955300 2733000 3690700 1934700 1978700 2334900 3196100 2501800 4731200 315630 5886300 2858000 2959900 3652100 2019300 2131100 2263900 3045400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2686200 5067200 95661 5871700 2955300 2733000 3690700 1934700 1978700 2334900 3196100 2501800 4731200 315630 5886300 2858000 2959900 3652100 2019300 2131100 2263900 3045400 1 1 1 1 1 1 1 1 1 1 1 485880000 0 485880000 10773 1360 10004 56477 68467 68467 1 KVNLGVGAYR Unmodified 1075.6138 0.61382777 703 P17174 GOT1 Aspartate aminotransferase, cytoplasmic yes yes 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 38.791 38.52 3 0.00013686 12421 20211116_3441_TMUAki_TMT10x_S_F3 116.52 83.397 1031100 1554200 20290 1855400 1178000 986290 963150 1952300 1655100 1502000 1503800 960170 1451400 106450 1858500 1125300 1080100 1009600 1922800 1648100 1485500 1455400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1031100 1554200 20290 1855400 1178000 986290 963150 1952300 1655100 1502000 1503800 960170 1451400 106450 1858500 1125300 1080100 1009600 1922800 1648100 1485500 1455400 1 1 1 1 1 1 1 1 1 1 1 44021000 0 44021000 10774 703 10005 56478;56479 68468;68469 68469 2 KVNNADDFPNLFR Unmodified 1548.7685 0.76849051 1591 Q13085;Q13085-4;Q13085-3;Q13085-2 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 0 0 0 1 By MS/MS 7.5 0.5 1 1 2 55.274 55.705 3 1.7204E-18 17573 20211116_3435_TMUAki_TMT10x_P_F7 152.16 132.06 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10775 1591 10006 56480;56481 68470;68471 68470 2 KVNPDLQVEVKPSIR Unmodified 1720.9836 0.98356866 2513 Q96KR1 ZFR Zinc finger RNA-binding protein yes yes 0 0 0 2 By MS/MS 8 0 1 1 44.988 44.958 4 2.0706E-14 11556 20211116_3447_TMUAki_TMT10x_S_F8 155.22 135.64 2512600 3229200 0 4071500 2445700 2146700 2039900 2894700 3182700 2788300 3119000 2339400 3016400 192980 4065300 2333900 2322500 2125700 2902200 3185600 2727600 3010800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2512600 3229200 0 4071500 2445700 2146700 2039900 2894700 3182700 2788300 3119000 2339400 3016400 192980 4065300 2333900 2322500 2125700 2902200 3185600 2727600 3010800 1 1 0 1 1 1 1 1 1 1 1 181120000 0 181120000 10776 2513 10007 56482 68472 68472 1 KVNVTVDYIRPASPATETVPAFSER Unmodified 2746.429 0.42899369 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 2 By MS/MS By MS/MS 6.2 2.64 1 2 2 3 2 55.732 55.999 4 1.4144E-72 16017 20211116_3447_TMUAki_TMT10x_S_F8 238.2 227.87 31824000 53635000 170010 52083000 39301000 47736000 34793000 37590000 36278000 34676000 39107000 29632000 50042000 2798800 53178000 37574000 48670000 35574000 38643000 36942000 33987000 37637000 4 4 3 4 4 4 4 4 4 4 4 17461000 25968000 170010 27476000 22467000 33999000 21739000 19803000 17928000 17769000 21075000 16259000 24236000 1676200 28021000 21534000 33915000 21971000 20790000 18517000 17438000 20233000 3 3 3 3 3 3 3 3 3 3 3 14364000 27667000 0 24607000 16834000 13737000 13054000 17786000 18350000 16907000 18031000 13373000 25805000 1122700 25157000 16039000 14756000 13603000 17853000 18425000 16548000 17404000 1 1 0 1 1 1 1 1 1 1 1 8880200000 5538600000 3341700000 10777 2048 10008 56483;56484;56485;56486;56487 68473;68474;68475;68476 68476 4 KVPCVGLSIGVER Unmodified 1412.781 0.78096945 637 P12081;P12081-4;P12081-3;P12081-2 HARS Histidine--tRNA ligase, cytoplasmic yes no 0 0 0 1 By MS/MS By MS/MS 2.8 2.64 2 2 1 3 2 50.172 50.008 3 1.5674E-12 13992 20211116_3428_TMUAki_TMT10x_P_F1 158.93 106.66 20037000 31551000 168080 37141000 24494000 28653000 22518000 25071000 23107000 21819000 25852000 18657000 29461000 1827900 37369000 23443000 29633000 22963000 25573000 23579000 21443000 24854000 5 5 4 5 5 5 5 5 5 5 5 9557700 14553000 76169 15875000 14252000 19757000 12926000 12102000 10029000 10143000 12369000 8899700 13585000 929130 16160000 13637000 19716000 13091000 12632000 10413000 9986700 11859000 2 2 2 2 2 2 2 2 2 2 2 10479000 16997000 91913 21267000 10242000 8895900 9592000 12969000 13078000 11676000 13483000 9757100 15876000 898730 21209000 9806700 9917100 9871500 12941000 13166000 11457000 12994000 3 3 2 3 3 3 3 3 3 3 3 2088500000 1235000000 853520000 10778 637 10009 56488;56489;56490;56491;56492 68477;68478;68479;68480;68481;68482 68477 6 KVPEFQFLIGDEAATHLK Unmodified 2042.0837 0.083676635 918 P34949 MPI Mannose-6-phosphate isomerase yes yes 0 0 0 1 By MS/MS By matching 7.5 0.5 1 1 1 1 67.404 67.629 4 2.7652E-05 22527 20211116_3435_TMUAki_TMT10x_P_F7 81.357 57.316 14292000 21911000 152470 20724000 16343000 28354000 17325000 15232000 13871000 14721000 16220000 13308000 20441000 1355700 21340000 15705000 28119000 17415000 16134000 14346000 14398000 15574000 2 2 2 2 2 2 2 2 2 2 2 14292000 21911000 152470 20724000 16343000 28354000 17325000 15232000 13871000 14721000 16220000 13308000 20441000 1355700 21340000 15705000 28119000 17415000 16134000 14346000 14398000 15574000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2274700000 1408300000 866470000 10779 918 10010 56493;56494 68483;68484 68484 2 KVPGEGLPLPK Unmodified 1133.6808 0.6808447 804 P25685;P25685-2 DNAJB1 DnaJ homolog subfamily B member 1 yes no 0 0 0 1 By MS/MS By MS/MS 8 0 3 2 1 48.202 48.241 3 6.0312E-05 12941 20211116_3447_TMUAki_TMT10x_S_F8 90.731 38.804 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10780 804 10011 56495;56496;56497 68485;68486;68487 68487 3 KVPGVTAIELDEDTGTFR Unmodified 1946.9949 0.99492121 1148 P51114;P51114-2;P51114-3 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 5 1.22 1 2 2 2 1 4 4 59.652 59.731 3 1.5752E-50 17784 20211116_3445_TMUAki_TMT10x_S_F6 231.21 210.84 64629000 105860000 1036000 105410000 76269000 97052000 69964000 68690000 65801000 66064000 77553000 60180000 98780000 6045400 107440000 73005000 98748000 71168000 71192000 67540000 64630000 74448000 12 12 9 12 12 12 12 12 12 12 12 37554000 59636000 400020 58691000 47519000 71070000 44202000 39265000 37730000 37643000 43396000 34966000 55643000 3220100 60126000 45478000 70923000 44809000 41478000 38868000 36831000 41687000 6 6 4 6 6 6 6 6 6 6 6 27075000 46228000 636020 46715000 28750000 25982000 25762000 29425000 28071000 28422000 34157000 25214000 43137000 2825300 47313000 27528000 27825000 26360000 29713000 28672000 27799000 32761000 6 6 5 6 6 6 6 6 6 6 6 14273000000 7175000000 7097800000 10781 1148 10012 56498;56499;56500;56501;56502;56503;56504;56505 68488;68489;68490;68491;68492;68493;68494;68495;68496;68497;68498;68499 68496 12 KVPGVTAIELGEETCTFR Unmodified 2006.0143 0.014276441 1149 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 0 0 0 1 By MS/MS By MS/MS 6.14 0.833 2 2 3 4 3 60.434 60.618 3 1.8382E-31 17786 20211116_3434_TMUAki_TMT10x_P_F6 193.06 182.96 18663000 31415000 193050 30585000 23587000 27486000 19458000 23330000 20104000 22447000 24191000 17377000 29310000 1628000 31214000 22513000 28099000 19973000 23904000 20569000 21959000 23209000 5 5 3 5 5 5 5 5 5 5 5 6321700 10614000 99929 10181000 8114700 14100000 7322600 8583400 7656800 7578600 8294500 5885700 9902600 498420 10475000 7757500 13998000 7479400 8975400 7797500 7443100 7981600 2 2 1 2 2 2 2 2 2 2 2 12341000 20801000 93121 20404000 15472000 13386000 12136000 14747000 12447000 14868000 15896000 11491000 19408000 1129600 20739000 14755000 14101000 12494000 14928000 12772000 14516000 15228000 3 3 2 3 3 3 3 3 3 3 3 3933000000 1332100000 2600800000 10782 1149 10013 56506;56507;56508;56509;56510;56511;56512 68500;68501;68502;68503;68504;68505;68506;68507;68508 68502 9 KVPQVSTPTLVEVSR Unmodified 1638.9305 0.93047046 38 CON__P02769;P02768;CON__P02768-1;P02768-2;P02768-3 ALB Serum albumin yes no 0 0 0 1 By MS/MS By MS/MS 4.8 2.79 2 2 2 2 2 5 5 48.588 48.654 3 3.7353E-30 14767 20211116_3435_TMUAki_TMT10x_P_F7 211.78 194.11 + 84899000 117560000 1455500 121410000 201420000 183850000 143980000 325140000 340430000 227670000 174820000 79050000 109710000 8814500 124520000 191690000 186620000 155130000 320530000 331860000 226370000 173770000 15 15 7 15 15 15 15 15 15 15 15 52978000 69005000 1360700 68181000 169290000 164980000 127550000 217810000 230440000 153390000 112160000 49332000 64386000 6627700 71062000 161310000 163290000 134750000 216860000 225730000 152470000 111850000 6 6 4 6 6 6 6 6 6 6 6 31921000 48550000 94785 53227000 32128000 18865000 16429000 107330000 110000000 74273000 62660000 29718000 45320000 2186800 53456000 30381000 23326000 20382000 103680000 106130000 73901000 61911000 9 9 3 9 9 9 9 9 9 9 9 43260000000 24086000000 19174000000 10783 38 10014 56513;56514;56515;56516;56517;56518;56519;56520;56521;56522 68509;68510;68511;68512;68513;68514;68515;68516;68517;68518;68519;68520;68521;68522;68523;68524 68513 16 KVPTVSRPYSFIEFDTFIQK Unmodified 2401.2682 0.26818294 331 O75396 SEC22B Vesicle-trafficking protein SEC22b yes yes 0 0 0 2 By MS/MS By MS/MS 3.33 0.745 1 2 3 4 2 72.05 71.906 4;5 1.1035E-31 26140 20211116_3441_TMUAki_TMT10x_S_F3 179.95 162.46 61258000 105710000 595200 89997000 77550000 110370000 81764000 70056000 69682000 72748000 80969000 57041000 98585000 5755600 93226000 74493000 110270000 82343000 73343000 71819000 70939000 77758000 9 9 7 9 9 9 9 9 9 9 9 36829000 62286000 386010 54757000 41562000 80753000 48849000 40654000 43678000 43946000 48409000 34294000 58092000 3474000 56781000 40058000 79761000 49009000 43456000 44829000 42784000 46552000 5 5 4 5 5 5 5 5 5 5 5 24429000 43429000 209190 35240000 35988000 29613000 32915000 29402000 26004000 28802000 32560000 22747000 40493000 2281600 36445000 34435000 30510000 33334000 29887000 26990000 28154000 31207000 4 4 3 4 4 4 4 4 4 4 4 13079000000 7882900000 5196100000 10784 331 10015 56523;56524;56525;56526;56527;56528 68525;68526;68527;68528;68529;68530;68531;68532;68533 68530 9 KVPVSVNLLSK Unmodified 1182.7336 0.73360855 377 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 3.75 0.433 1 3 2 2 54.715 54.713 3 1.0329E-07 18063 20211116_3430_TMUAki_TMT10x_P_F3 116.51 81.703 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10785 377 10016 56529;56530;56531;56532 68534;68535;68536;68537 68534 4 KVPWFDQQNGR Unmodified 1373.684 0.6840326 2336 Q92522 H1FX Histone H1x yes yes 0 0 0 1 By MS/MS By MS/MS 2.8 2.64 2 2 1 3 2 45.569 45.433 3 2.1918E-11 13710 20211116_3429_TMUAki_TMT10x_P_F2 171.32 149.09 16444000 26086000 131280 36056000 38339000 25651000 23115000 15787000 18011000 16292000 24872000 15309000 24378000 1377600 35924000 36359000 26551000 24085000 16564000 18790000 15891000 23781000 5 5 2 5 5 5 5 5 5 5 5 8026000 12905000 128900 18579000 32452000 20986000 17751000 7357800 8043100 7610100 12332000 7472100 12063000 894420 18589000 30739000 20924000 18473000 8176300 8759500 7422100 11763000 2 2 1 2 2 2 2 2 2 2 2 8418400 13181000 2381.3 17477000 5887000 4664700 5364500 8429400 9968100 8682100 12541000 7836900 12316000 483190 17335000 5619900 5627000 5611300 8388000 10031000 8469000 12018000 3 3 1 3 3 3 3 3 3 3 3 2996600000 2163400000 833270000 10786 2336 10017 56533;56534;56535;56536;56537 68538;68539;68540;68541;68542;68543 68539 6 KVQGGALEDSQLVAGVAFK Unmodified 1916.0367 0.036726442 2609 Q99832;Q99832-3;Q99832-4 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 1 By MS/MS By MS/MS 7.56 0.497 4 5 4 5 61.688 62.038 3;4 1.1009E-17 20166 20211116_3435_TMUAki_TMT10x_P_F7 148.56 125.42 80303000 136940000 158060 134410000 92980000 116710000 87075000 77364000 71039000 77033000 93387000 74764000 127770000 6094900 137030000 88957000 119100000 88136000 80634000 73765000 75248000 89395000 10 10 5 10 10 10 10 10 10 10 10 35428000 58335000 12129 59847000 42883000 72424000 43638000 35454000 32000000 33453000 40315000 32981000 54439000 2279200 61135000 41088000 72174000 43864000 37853000 33359000 32754000 38633000 5 5 2 5 5 5 5 5 5 5 5 44875000 78604000 145930 74563000 50097000 44284000 43437000 41910000 39039000 43580000 53072000 41784000 73331000 3815700 75899000 47869000 46928000 44272000 42781000 40406000 42494000 50762000 5 5 3 5 5 5 5 5 5 5 5 8091300000 4525800000 3565500000 10787 2609 10018 56538;56539;56540;56541;56542;56543;56544;56545;56546 68544;68545;68546;68547;68548;68549;68550;68551;68552;68553;68554 68545 11 KVQGGALEDSQLVAGVAFKK Unmodified 2044.1317 0.13168946 2609 Q99832;Q99832-3;Q99832-4 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 2 By MS/MS By MS/MS 3 2.92 2 1 1 2 2 58.151 58.061 4 8.2013E-18 17247 20211116_3428_TMUAki_TMT10x_P_F1 143.39 138.75 53275000 87537000 808520 90990000 81795000 102790000 63898000 68573000 62024000 65203000 72081000 49607000 81695000 5117500 92758000 77999000 103220000 65692000 71346000 63538000 63819000 69222000 7 7 5 7 7 7 7 7 7 7 7 37543000 62822000 808310 62609000 63905000 88794000 49883000 50440000 45044000 47172000 52577000 34960000 58619000 3886600 64278000 60949000 87980000 51182000 53122000 46304000 46205000 50486000 5 5 4 5 5 5 5 5 5 5 5 15732000 24715000 205.46 28381000 17891000 13994000 14015000 18132000 16980000 18031000 19504000 14647000 23076000 1230800 28480000 17050000 15237000 14510000 18224000 17234000 17614000 18737000 2 2 1 2 2 2 2 2 2 2 2 5656200000 3247800000 2408400000 10788 2609 10019 56547;56548;56549;56550 68555;68556;68557;68558;68559;68560;68561 68555 7 KVQHQDALQISDVVMASLLR Unmodified 2250.2154 0.21543586 1739 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 1 By MS/MS 2 0 1 1 72.869 72.756 4 1.3201E-06 23564 20211116_3440_TMUAki_TMT10x_S_F2 85.855 64.609 1840700 3390500 0 2888000 2329000 2181900 2095500 2001300 1852800 2047900 2364800 1713400 3161800 97049 2971200 2223200 2262300 2130300 2045300 1913700 1998200 2265300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1840700 3390500 0 2888000 2329000 2181900 2095500 2001300 1852800 2047900 2364800 1713400 3161800 97049 2971200 2223200 2262300 2130300 2045300 1913700 1998200 2265300 1 1 0 1 1 1 1 1 1 1 1 470150000 0 470150000 10789 1739 10020 56551 68562 68562 1 KVQSDGQIVLVDDWIK Unmodified 1841.9887 0.98871362 1546 Q08211;Q08211-2 DHX9 ATP-dependent RNA helicase A yes no 0 0 0 1 By MS/MS By MS/MS 7 0.816 2 2 2 4 2 67.971 68.148 3 6.6707E-09 21315 20211116_3445_TMUAki_TMT10x_S_F6 121.27 94.238 30566000 51297000 75122 54234000 37026000 42106000 38906000 21305000 17936000 23091000 34561000 28460000 47876000 2596000 54938000 35548000 43176000 38716000 22765000 19754000 22479000 32825000 7 7 3 7 7 7 7 7 7 7 7 17792000 30346000 7415.3 31857000 23384000 31654000 25101000 12715000 10857000 13998000 20116000 16566000 28322000 1484200 32390000 22460000 31834000 24931000 13922000 11997000 13618000 19118000 4 4 1 4 4 4 4 4 4 4 4 12774000 20950000 67706 22376000 13643000 10452000 13804000 8589800 7078100 9093300 14445000 11894000 19554000 1111800 22549000 13088000 11342000 13786000 8842600 7756500 8860300 13707000 3 3 2 3 3 3 3 3 3 3 3 4051300000 2598300000 1453000000 10790 1546 10021 56552;56553;56554;56555;56556;56557 68563;68564;68565;68566;68567;68568;68569;68570 68569 8 KVQSGNINAAK Unmodified 1128.6251 0.62512073 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 1 By MS/MS 1 0 1 1 31.139 31.188 3 6.7705E-07 8430 20211116_3439_TMUAki_TMT10x_S_F1 134.56 92.226 256780 441830 755.33 289790 240830 395620 314990 236970 249000 241310 308080 239100 411710 21770 307950 232830 392940 313590 249070 258300 235500 295370 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 256780 441830 755.33 289790 240830 395620 314990 236970 249000 241310 308080 239100 411710 21770 307950 232830 392940 313590 249070 258300 235500 295370 1 1 1 1 1 1 1 1 1 1 1 17597000 0 17597000 10791 1094 10022 56558 68571 68571 1 KVQVPNCDEIFYAGTGNLLLR Unmodified 2406.2366 0.23656524 1207 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 1 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 73.368 73.276 3 1.9865E-26 23792 20211116_3440_TMUAki_TMT10x_S_F2 171.47 153.9 15463000 26060000 211340 24323000 16572000 26427000 18929000 14361000 14619000 16809000 18127000 14399000 24310000 1480500 24968000 15961000 26521000 18944000 15283000 15185000 16315000 17378000 8 8 7 8 8 8 8 8 8 8 8 11741000 19518000 195760 18122000 11602000 22243000 14066000 10599000 11084000 12662000 13418000 10933000 18207000 1139900 18647000 11197000 22144000 14046000 11425000 11489000 12282000 12872000 6 6 5 6 6 6 6 6 6 6 6 3722200 6541400 15585 6201800 4970100 4184000 4863200 3762300 3535200 4146300 4708300 3465900 6102500 340600 6320700 4763800 4377300 4897400 3858000 3696200 4033700 4505600 2 2 2 2 2 2 2 2 2 2 2 2124300000 1495100000 629180000 10792 1207 10023 56559;56560;56561 68572;68573;68574;68575;68576;68577;68578;68579 68579 8 KVSPESNEDISTTVVYR Unmodified 1922.9585 0.9585357 397 O94925-3 GLS Glutaminase kidney isoform, mitochondrial yes yes 0 0 0 1 By MS/MS 4 0 1 1 42.331 42.413 3 2.918E-22 11326 20211116_3431_TMUAki_TMT10x_P_F4 157.51 138.92 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10793 397 10024 56562 68580 68580 1 KVSQPIEGHAASFAQFK Unmodified 1843.9581 0.95808219 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 45.21 45.074 4 6.8452E-30 12255 20211116_3440_TMUAki_TMT10x_S_F2 195.38 167.17 5750100 9769000 121550 12502000 9382400 11840000 6094700 9437600 9867300 8261500 9006200 5354800 9125700 640880 12551000 8921000 12049000 6470800 9681600 9842700 8117100 8714600 4 4 4 4 4 4 4 4 4 4 4 3188600 4965200 11623 6369500 7646600 9759200 4578300 5253000 5394800 4602100 4753300 2969000 4638300 337630 6449400 7255500 9631700 4829600 5548800 5429800 4521500 4605200 2 2 2 2 2 2 2 2 2 2 2 2561500 4803800 109930 6132300 1735800 2081100 1516400 4184600 4472600 3659400 4252900 2385900 4487500 303250 6101600 1665500 2417200 1641200 4132700 4412900 3595600 4109400 2 2 2 2 2 2 2 2 2 2 2 1739300000 1212800000 526510000 10794 1471 10025 56563;56564;56565;56566 68581;68582;68583;68584 68584 4 KVSQWWER Unmodified 1117.5669 0.56687757 3047 Q9P035 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 43.707 43.569 3 0.015737 13042 20211116_3429_TMUAki_TMT10x_P_F2 64.374 36.205 4135800 6563700 42941 8886400 7651000 5091800 5400400 2741600 2542700 2554800 5222800 3851200 6133300 432140 8844800 7282100 5368500 5507100 2900500 2806900 2502900 4955300 2 2 2 2 2 2 2 2 2 2 2 2256500 3665000 5212.6 4865500 6128300 3977200 3887100 1484800 1210600 1348300 2757900 2101100 3424300 246170 4865500 5820100 4050500 3977200 1631300 1403600 1322500 2612500 1 1 1 1 1 1 1 1 1 1 1 1879300 2898700 37729 4020900 1522600 1114600 1513300 1256800 1332000 1206500 2465000 1750100 2709000 185970 3979300 1462000 1318000 1529900 1269200 1403200 1180400 2342800 1 1 1 1 1 1 1 1 1 1 1 138010000 107330000 30679000 10795 3047 10026 56567;56568 68585 68585 1 KVTGTLDANR Unmodified 1073.5829 0.58292157 1859 Q16658 FSCN1 Fascin yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 30.927 30.912 3 0.0017948 7062 20211116_3433_TMUAki_TMT10x_P_F5 80.318 47.478 579770 954700 24726 884910 872160 1021700 636870 491740 511540 470920 766140 540010 890580 75206 909730 831850 1020500 654430 526090 534920 460790 731180 1 1 1 1 1 1 1 1 1 1 1 579770 954700 24726 884910 872160 1021700 636870 491740 511540 470920 766140 540010 890580 75206 909730 831850 1020500 654430 526090 534920 460790 731180 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34124000 34124000 0 10796 1859 10027 56569;56570 68586 68586 1 KVTHAVVTVPAYFNDAQR Unmodified 2015.0589 0.058858868 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 45.725 45.56 4 2.0245E-12 12139 20211116_3428_TMUAki_TMT10x_P_F1 135.29 122.17 10914000 16058000 132390 20387000 16867000 17571000 11710000 13016000 13898000 11812000 14511000 10163000 15000000 1092200 20450000 16050000 17972000 12216000 13428000 14065000 11586000 13979000 9 9 6 9 9 9 9 9 9 9 9 7944900 11278000 111920 14582000 14331000 15305000 9402600 9002000 9813600 8424600 10414000 7398300 10536000 843620 14654000 13624000 15406000 9807900 9453400 9986900 8251700 10027000 5 5 4 5 5 5 5 5 5 5 5 2969500 4779700 20476 5804900 2535600 2266000 2307700 4014000 4084900 3387500 4097700 2764900 4463800 248600 5796600 2426000 2566000 2407700 3974200 4078300 3334200 3952500 4 4 2 4 4 4 4 4 4 4 4 4611700000 2722300000 1889400000 10797 614 10028 56571;56572;56573;56574 68587;68588;68589;68590;68591;68592;68593;68594;68595 68587 9 KVTLGDTLTR Unmodified 1102.6346 0.63462279 3160 Q9UKV3;Q9UKV3-5;Q9UKV3-2;Q9UKV3-3 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 38.483 38.829 3 0.0037301 10826 20211116_3435_TMUAki_TMT10x_P_F7 73.848 42.475 1972300 2913800 2276.3 3209200 3079900 2641400 2123100 1956700 2241700 1843200 2356200 1836300 2720000 172250 3244600 2928700 2710600 2207300 2020600 2279400 1804900 2269400 3 3 2 3 3 3 3 3 3 3 3 1075600 1554700 2276.3 1733700 2337900 1930800 1242400 1105500 1232600 1007900 1268200 1001500 1451400 108970 1759000 2214300 1936300 1317200 1162700 1255600 988420 1222300 2 2 2 2 2 2 2 2 2 2 2 896730 1359100 0 1475500 742030 710600 880720 851220 1009100 835290 1088100 834870 1268600 63282 1485600 714400 774250 890080 857890 1023800 816450 1047200 1 1 0 1 1 1 1 1 1 1 1 92778000 64487000 28291000 10798 3160 10029 56575;56576;56577 68596;68597;68598 68596 3 KVTMINAIPVASLDPIK Oxidation (M) 1825.0383 0.038306347 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 1 1 By MS/MS By MS/MS 2 0 2 1 1 65.548 65.315 3;4 0.0013899 20590 20211116_3440_TMUAki_TMT10x_S_F2 62.203 42.462 1702100 2856500 0 3176800 1612300 1588200 1734500 1733500 1737900 1780200 2221800 1584600 2666600 109290 3194500 1547100 1719200 1753100 1756600 1785000 1736700 2128300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1702100 2856500 0 3176800 1612300 1588200 1734500 1733500 1737900 1780200 2221800 1584600 2666600 109290 3194500 1547100 1719200 1753100 1756600 1785000 1736700 2128300 1 1 0 1 1 1 1 1 1 1 1 411750000 0 411750000 10799 3317 10030 56578;56579 68599;68600 68600 3276 2 KVTMINAIPVASLDPIK Unmodified 1809.0434 0.043391725 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 0 1 By MS/MS 3 0 1 1 72.931 72.617 4 0.00035205 26317 20211116_3441_TMUAki_TMT10x_S_F3 69.148 42.119 1649900 2419400 0 3515600 1317200 940690 1634300 725670 495160 732870 1450500 1536000 2261600 111120 3470600 1269600 1112300 1605900 748880 587490 715460 1369600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1649900 2419400 0 3515600 1317200 940690 1634300 725670 495160 732870 1450500 1536000 2261600 111120 3470600 1269600 1112300 1605900 748880 587490 715460 1369600 1 1 0 1 1 1 1 1 1 1 1 345140000 0 345140000 10800 3317 10030 56580 68601 68601 1 KVTQLDLDGPK Unmodified 1212.6714 0.67140222 1634 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein yes yes 0 0 0 1 By MS/MS 6 0 1 1 45.013 45.178 3 0.00016348 11806 20211116_3445_TMUAki_TMT10x_S_F6 95.183 71.957 2768400 4596700 86137 4923700 2782000 2700700 2645000 3491200 3991300 3279900 3982200 2578300 4290500 309990 4966700 2669300 2906200 2731800 3503400 4001200 3212100 3841800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2768400 4596700 86137 4923700 2782000 2700700 2645000 3491200 3991300 3279900 3982200 2578300 4290500 309990 4966700 2669300 2906200 2731800 3503400 4001200 3212100 3841800 1 1 1 1 1 1 1 1 1 1 1 169710000 0 169710000 10801 1634 10031 56581 68602 68602 1 KVVAEVYDQER Unmodified 1334.683 0.68302954 3124 Q9UHX1-6;Q9UHX1-5;Q9UHX1-4;Q9UHX1-2;Q9UHX1;Q9UHX1-3 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 0 0 0 1 By MS/MS 5 0 1 1 37.946 37.935 3 0.0015492 9876 20211116_3433_TMUAki_TMT10x_P_F5 72.681 58.424 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10802 3124 10032 56582 68603 68603 1 KVVAEVYDQERFDNSDLSA Unmodified 2184.0335 0.033491558 3124 Q9UHX1-6;Q9UHX1-5;Q9UHX1-4;Q9UHX1-2;Q9UHX1;Q9UHX1-3 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 0 0 0 2 By MS/MS By MS/MS 3.67 0.943 1 1 3 1 2 4 55.858 55.74 3 3.9626E-06 17184 20211116_3442_TMUAki_TMT10x_S_F4 96.718 87.348 13426000 23122000 175080 22966000 18064000 18249000 13520000 20038000 18564000 18027000 19286000 12502000 21575000 1279500 23370000 17213000 18922000 14108000 20223000 18690000 17689000 18582000 5 5 3 5 5 5 5 5 5 5 5 2340100 4135400 18306 3758900 4048800 7868400 3681300 4809800 4316200 4304100 3786600 2179000 3857300 235000 3922700 3874000 7693600 3772900 5029500 4344500 4224400 3669200 1 1 1 1 1 1 1 1 1 1 1 11086000 18987000 156780 19207000 14015000 10381000 9839200 15228000 14247000 13723000 15500000 10323000 17717000 1044500 19447000 13339000 11229000 10335000 15193000 14346000 13464000 14913000 4 4 2 4 4 4 4 4 4 4 4 1929700000 574830000 1354900000 10803 3124 10033 56583;56584;56585;56586;56587;56588 68604;68605;68606;68607;68608;68609;68610 68608 7 KVVDPFSK Unmodified 918.51747 0.51746776 1305 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 0 1 By MS/MS 8 0 1 1 46.564 46.683 3 0.067452 12780 20211116_3436_TMUAki_TMT10x_P_F8 47.559 19.16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10804 1305 10034 56589 68611 68611 1 KVVGCSCVVVK Unmodified 1233.6573 0.65734884 801 P25398 RPS12 40S ribosomal protein S12 yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 2.69 2 2 2 2 4 4 38.394 38.421 3 3.7231E-08 9323 20211116_3440_TMUAki_TMT10x_S_F2 142.83 106.31 24010000 37432000 235130 32206000 31406000 46947000 27435000 33983000 29896000 28393000 29758000 22357000 34908000 2187600 33445000 30020000 46626000 28112000 35038000 30302000 27960000 28711000 15 15 9 15 15 15 15 15 15 15 15 18230000 27909000 215530 23958000 25211000 40916000 22254000 25725000 22935000 21274000 22241000 16974000 26027000 1708400 24974000 24105000 40295000 22749000 26789000 23278000 20961000 21477000 9 9 6 9 9 9 9 9 9 9 9 5780500 9523000 19592 8248300 6195400 6030600 5180200 8258000 6960900 7118700 7516800 5382200 8881200 479180 8471500 5914500 6330500 5362700 8249600 7023300 6999400 7234000 6 6 3 6 6 6 6 6 6 6 6 3110700000 1973300000 1137400000 10805 801 10035 56590;56591;56592;56593;56594;56595;56596;56597 68612;68613;68614;68615;68616;68617;68618;68619;68620;68621;68622;68623;68624;68625;68626 68623 15 KVVGDVAYDEAK Unmodified 1292.6612 0.66123147 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 1 By MS/MS 6 0 1 1 39.719 39.883 3 0.0011878 9763 20211116_3445_TMUAki_TMT10x_S_F6 69.716 50.985 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10806 629 10036 56598 68627 68627 1 KVVNPLFEK Unmodified 1072.6281 0.62808085 1358 P62424 RPL7A 60S ribosomal protein L7a yes yes 0 0 0 1 By MS/MS By MS/MS 4.75 3.27 1 1 2 3 1 49.895 49.826 3 1.2011E-05 13907 20211116_3428_TMUAki_TMT10x_P_F1 116.77 83.537 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10807 1358 10037 56599;56600;56601;56602 68628;68629;68630;68631 68628 4 KVVVSPTK Unmodified 856.5382 0.53820321 729 P19338 NCL Nucleolin yes yes 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 34.016 33.942 3 0.0019989 9063 20211116_3429_TMUAki_TMT10x_P_F2 88.496 23.271 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10808 729 10038 56603;56604;56605 68632;68633;68634 68633 3 KVVYENAYGQFIGPHR Unmodified 1876.9584 0.95841654 1871 Q16881;Q16881-3;Q16881-4;Q16881-5;Q16881-2;Q16881-6;Q16881-7 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 0 0 0 1 By MS/MS By MS/MS 3.08 2.27 3 4 3 1 2 6 7 46.864 46.758 3;4 6.6452E-53 12963 20211116_3440_TMUAki_TMT10x_S_F2 271.43 244.8 23310000 38700000 189120 45505000 42006000 48942000 27839000 39273000 37847000 35610000 33210000 21704000 36136000 1961300 45993000 39923000 49430000 29288000 40308000 37900000 34929000 32180000 16 16 8 16 16 16 16 16 16 16 16 13802000 23523000 100450 27026000 33349000 40475000 20809000 24124000 24376000 21668000 19275000 12852000 21962000 1352800 27525000 31663000 40036000 21874000 25279000 24461000 21263000 18752000 9 9 5 9 9 9 9 9 9 9 9 9507700 15177000 88664 18479000 8656700 8467700 7029400 15149000 13471000 13942000 13935000 8852600 14174000 608490 18469000 8259600 9394000 7414700 15029000 13439000 13666000 13428000 7 7 3 7 7 7 7 7 7 7 7 9456400000 6525800000 2930600000 10809 1871 10039 56606;56607;56608;56609;56610;56611;56612;56613;56614;56615;56616;56617;56618 68635;68636;68637;68638;68639;68640;68641;68642;68643;68644;68645;68646;68647;68648;68649;68650 68646 16 KVWLDPNETNEIANANSR Unmodified 2070.013 0.013030887 1456 P84098 RPL19 60S ribosomal protein L19 yes yes 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 52.754 53.058 3 2.2072E-17 14683 20211116_3434_TMUAki_TMT10x_P_F6 150.61 141.03 21162000 35412000 411210 44434000 36990000 35111000 28630000 15363000 16811000 16802000 25755000 19707000 33077000 2359400 44554000 35283000 35900000 29111000 16660000 17937000 16351000 24568000 7 7 7 7 7 7 7 7 7 7 7 15892000 26112000 323270 32639000 33354000 31794000 25579000 11214000 12137000 12267000 19023000 14800000 24389000 1863400 32824000 31806000 31980000 25936000 12471000 13180000 11937000 18138000 5 5 5 5 5 5 5 5 5 5 5 5269400 9299900 87943 11795000 3636100 3317000 3050900 4149600 4674000 4535200 6732500 4907000 8687100 495950 11730000 3477000 3920800 3175500 4188600 4757000 4413400 6430900 2 2 2 2 2 2 2 2 2 2 2 2129600000 1780200000 349400000 10810 1456 10040 56619;56620;56621;56622 68651;68652;68653;68654;68655;68656;68657;68658 68651 8 KVYENYPTYDLTER Unmodified 1789.8523 0.85227972 942 P35659;P35659-2 DEK Protein DEK yes no 0 0 0 1 By MS/MS By MS/MS 6 0.816 2 2 2 2 4 47.24 47.385 3 1.0226E-19 13559 20211116_3433_TMUAki_TMT10x_P_F5 177.74 162.82 16221000 27452000 237140 34733000 22751000 25120000 15124000 26181000 26494000 24304000 26174000 15104000 25643000 1491600 34776000 21627000 26207000 16092000 26509000 26444000 23814000 25259000 6 6 3 6 6 6 6 6 6 6 6 6196300 10656000 63507 12708000 16861000 18859000 10551000 9966900 9580000 9042700 9246100 5769100 9950500 635130 12912000 16007000 18633000 11002000 10555000 9776600 8869600 8929700 3 3 1 3 3 3 3 3 3 3 3 10025000 16796000 173630 22025000 5890200 6261300 4573600 16214000 16914000 15262000 16928000 9334600 15692000 856500 21864000 5620100 7574600 5090000 15954000 16667000 14945000 16329000 3 3 2 3 3 3 3 3 3 3 3 2286800000 1519900000 766850000 10811 942 10041 56623;56624;56625;56626;56627;56628 68659;68660;68661;68662;68663;68664;68665;68666 68659 8 KVYENYPTYDLTERK Unmodified 1917.9472 0.94724273 942 P35659;P35659-2 DEK Protein DEK yes no 0 0 0 2 By MS/MS By MS/MS 7 0 2 1 1 44.163 44.678 4 9.738E-24 13221 20211116_3435_TMUAki_TMT10x_P_F7 188.9 164.84 6061900 9239700 35346 14862000 11910000 10871000 6673900 6870300 7975300 6086700 8261800 5644500 8642600 617420 14705000 11290000 11231000 7083700 7163700 8066800 5976800 7961000 2 2 2 2 2 2 2 2 2 2 2 3591000 5523100 1699.9 9116700 10706000 9698300 5517100 4309800 4655700 3652200 4939400 3343500 5167100 398950 9055400 10135000 9723100 5840900 4634100 4784100 3594000 4756000 1 1 1 1 1 1 1 1 1 1 1 2470900 3716600 33646 5745300 1204100 1172700 1156800 2560500 3319700 2434500 3322400 2300900 3475600 218470 5649500 1155400 1507900 1242800 2529600 3282600 2382800 3204900 1 1 1 1 1 1 1 1 1 1 1 992040000 660990000 331050000 10812 942 10042 56629;56630 68667;68668 68667 2 KWESPAQNTAHLDQFER Unmodified 2055.9763 0.97625145 706 P17612;P17612-2 PRKACA cAMP-dependent protein kinase catalytic subunit alpha yes no 0 0 0 1 By MS/MS 5.5 0.5 1 1 2 42.801 42.951 4 2.8271E-08 10870 20211116_3445_TMUAki_TMT10x_S_F6 118.19 93.134 897150 1503200 0 1940100 722750 604090 693760 852750 862390 748120 1183300 835200 1404300 55146 1928400 691190 703400 710440 851340 881340 734960 1131600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 897150 1503200 0 1940100 722750 604090 693760 852750 862390 748120 1183300 835200 1404300 55146 1928400 691190 703400 710440 851340 881340 734960 1131600 1 1 0 1 1 1 1 1 1 1 1 259000000 0 259000000 10813 706 10043 56631;56632 68669 68669 1 KWGLGPK Unmodified 784.45956 0.45955895 294 O60832;O60832-2 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 0 0 0 1 By MS/MS 3 0 1 1 42.221 42.275 3 0.096086 12826 20211116_3430_TMUAki_TMT10x_P_F3 40.098 16.33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10814 294 10044 56633 68670 68670 1 KWHEEVEIYR Unmodified 1387.6884 0.68844927 42 CON__P15497 yes yes 0 0 0 1 By MS/MS 6 0 1 1 37.437 37.433 4 0.00011805 8467 20211116_3434_TMUAki_TMT10x_P_F6 114.86 96.19 + 304910 419610 5428.7 497640 742370 560900 376240 299730 327430 281920 389670 283940 391840 36465 503110 702940 561630 399270 317390 337450 276080 373970 1 1 1 1 1 1 1 1 1 1 1 304910 419610 5428.7 497640 742370 560900 376240 299730 327430 281920 389670 283940 391840 36465 503110 702940 561630 399270 317390 337450 276080 373970 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 40560000 40560000 0 10815 42 10045 56634 68671 68671 1 KWQTMIEAHVDVK Oxidation (M) 1599.8079 0.80791248 1305 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 1 1 By MS/MS By MS/MS 7 0 3 2 1 44.224 44.721 4 0.00019273 13940 20211116_3446_TMUAki_TMT10x_S_F7 83.633 64.055 14613000 25143000 294260 26537000 20290000 21392000 17007000 12071000 10322000 12459000 17871000 13608000 23466000 1565300 26897000 19390000 21901000 17215000 12755000 11061000 12152000 17006000 5 5 5 5 5 5 5 5 5 5 5 7996100 12834000 163150 13698000 14865000 15769000 10356000 6756800 6197700 7068600 9839600 7446400 11978000 911180 13944000 14149000 15734000 10611000 7334000 6616200 6890700 9379100 3 3 3 3 3 3 3 3 3 3 3 6617000 12309000 131110 12839000 5425000 5623600 6650900 5314100 4124200 5390100 8031100 6162000 11488000 654090 12952000 5240500 6167100 6604000 5420900 4444800 5261100 7626400 2 2 2 2 2 2 2 2 2 2 2 1303600000 917110000 386530000 10816 1305 10046 56635;56636;56637 68672;68673;68674;68675;68676 68676 1758 5 KWQTMIEAHVDVK Unmodified 1583.813 0.81299786 1305 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 53.906 53.923 3;4 7.0336E-06 15751 20211116_3436_TMUAki_TMT10x_P_F8 101.89 73.588 6246700 9956200 33896 11671000 8441400 9869200 7162200 6272300 5136300 5176600 7563500 5816300 9296600 553270 11758000 8062200 10084000 7269100 6526000 5400100 5100800 7221100 2 2 1 2 2 2 2 2 2 2 2 3434700 5385300 0 6554800 5800900 7506200 4391200 3752300 3172800 3005600 4018000 3197800 5029400 290950 6618600 5525000 7503800 4490200 3982200 3311100 2966100 3849900 1 1 0 1 1 1 1 1 1 1 1 2812000 4570900 33896 5116400 2640500 2363000 2770900 2520100 1963500 2171000 3545500 2618500 4267200 262320 5139900 2537200 2580600 2778900 2543800 2089000 2134700 3371200 1 1 1 1 1 1 1 1 1 1 1 1166200000 716480000 449740000 10817 1305 10046 56638;56639;56640 68677;68678;68679 68678 3 KYAALYQPLFDK Unmodified 1455.7762 0.77620165 2602 Q99733;Q99733-2 NAP1L4 Nucleosome assembly protein 1-like 4 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 64.843 64.461 3 0.00030949 21504 20211116_3429_TMUAki_TMT10x_P_F2 83.617 68.23 20681000 36966000 149630 27522000 30568000 49740000 26626000 39014000 33351000 32629000 31389000 19256000 34457000 1863400 29077000 29212000 49060000 27422000 40017000 33565000 32130000 30340000 3 3 2 3 3 3 3 3 3 3 3 14257000 25048000 149630 18186000 20440000 42638000 20972000 27443000 23185000 22410000 21446000 13276000 23346000 1408000 19403000 19621000 41587000 21314000 28518000 23428000 22094000 20742000 2 2 2 2 2 2 2 2 2 2 2 6424000 11918000 0 9336100 10129000 7101800 5653700 11571000 10166000 10219000 9943000 5980400 11111000 455380 9673300 9591000 7473100 6108500 11499000 10137000 10036000 9598600 1 1 0 1 1 1 1 1 1 1 1 1067300000 443520000 623800000 10818 2602 10047 56641;56642 68680;68681;68682 68680 3 KYADVIIPR Unmodified 1073.6233 0.62332982 2743 Q9BZX2;Q9HA47;Q9BZX2-2;Q9HA47-3;Q9HA47-4 UCK2;UCK1 Uridine-cytidine kinase 2;Uridine-cytidine kinase 1 yes no 0 0 0 1 By MS/MS 8 0 1 1 44.459 44.615 3 0.040139 11931 20211116_3436_TMUAki_TMT10x_P_F8 55.467 37.131 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10819 2743 10048 56643 68683 68683 1 KYAPTEAQLNAVDALIDSMSLAK Oxidation (M) 2464.2519 0.25194053 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 1 1 By MS/MS By MS/MS 6.09 2.43 3 1 1 3 6 8 15 7 69.829 69.846 3;4 5.2407E-28 24641 20211116_3447_TMUAki_TMT10x_S_F8 171.06 142.25 142860000 245860000 1523700 222290000 167180000 254720000 184830000 180540000 200240000 196880000 192910000 133030000 229330000 11582000 228920000 160820000 255820000 187040000 187790000 202770000 191610000 186320000 34 34 20 34 34 34 34 34 34 34 34 77297000 130830000 817600 114880000 74718000 165920000 91404000 93403000 104880000 100180000 100440000 71977000 122010000 5835000 119080000 72107000 164250000 92259000 98828000 105950000 97564000 97025000 23 23 14 23 23 23 23 23 23 23 23 65566000 115040000 706060 107410000 92459000 88802000 93428000 87135000 95353000 96695000 92476000 61052000 107310000 5747000 109840000 88710000 91576000 94777000 88963000 96819000 94044000 89297000 11 11 6 11 11 11 11 11 11 11 11 55752000000 28269000000 27483000000 10820 648 10049 56644;56645;56646;56647;56648;56649;56650;56651;56652;56653;56654;56655;56656;56657;56658;56659;56660;56661;56662;56663;56664;56665 68684;68685;68686;68687;68688;68689;68690;68691;68692;68693;68694;68695;68696;68697;68698;68699;68700;68701;68702;68703;68704;68705;68706;68707;68708;68709;68710;68711;68712;68713;68714;68715;68716;68717;68718 68717 700 35 KYAPTEAQLNAVDALIDSMSLAK Unmodified 2448.257 0.25702591 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 1 By MS/MS By MS/MS 4.1 3.21 3 3 4 5 5 79.863 79.853 3;4 4.9675E-38 25734 20211116_3447_TMUAki_TMT10x_S_F8 198.98 177.38 72533000 113910000 382170 116890000 74352000 70667000 83298000 26735000 24766000 36653000 67106000 67534000 106300000 5867000 118340000 71506000 73855000 82213000 29696000 29259000 35389000 63424000 17 17 8 17 17 17 17 17 17 17 17 35951000 56210000 196870 55440000 32144000 43251000 38636000 13170000 12185000 17876000 30272000 33473000 52447000 2851400 56430000 30979000 44137000 38032000 15050000 14196000 17265000 28642000 8 8 3 8 8 8 8 8 8 8 8 36582000 57696000 185300 61447000 42209000 27416000 44661000 13565000 12580000 18777000 36834000 34061000 53851000 3015600 61912000 40527000 29718000 44181000 14647000 15063000 18124000 34782000 9 9 5 9 9 9 9 9 9 9 9 15415000000 9098200000 6317200000 10821 648 10049 56666;56667;56668;56669;56670;56671;56672;56673;56674;56675 68719;68720;68721;68722;68723;68724;68725;68726;68727;68728;68729;68730;68731;68732;68733;68734;68735 68732 17 KYAVLYQPLFDK Unmodified 1483.8075 0.80750177 1240 P55209;P55209-2;P55209-3 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 0 0 0 1 By MS/MS By MS/MS 3.2 0.748 1 2 2 2 3 67.196 66.985 3 0.00017612 24170 20211116_3441_TMUAki_TMT10x_S_F3 91.858 78.178 36548000 67119000 456040 44521000 55946000 84241000 51965000 65509000 66833000 68840000 62353000 34032000 62545000 2792300 47608000 53568000 82948000 53379000 67650000 67181000 67096000 60288000 7 7 5 7 7 7 7 7 7 7 7 15863000 26618000 0 15822000 20644000 51196000 25139000 27037000 27469000 29662000 23968000 14770000 24797000 447710 17433000 19904000 49430000 25337000 28787000 27719000 28861000 23230000 2 2 0 2 2 2 2 2 2 2 2 20684000 40501000 456040 28699000 35302000 33045000 26826000 38472000 39364000 39178000 38384000 19262000 37747000 2344600 30176000 33664000 33518000 28042000 38863000 39462000 38234000 37058000 5 5 5 5 5 5 5 5 5 5 5 5073100000 2383000000 2690200000 10822 1240 10050 56676;56677;56678;56679;56680 68736;68737;68738;68739;68740;68741;68742 68740 7 KYAVLYQPLFDKR Unmodified 1639.9086 0.9086128 1240 P55209;P55209-2 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 0 0 0 2 By matching By MS/MS 5 0 2 1 1 57.946 58.108 4 0.0029375 16848 20211116_3444_TMUAki_TMT10x_S_F5 70.373 56.71 6839200 11685000 0 10985000 9747300 4768000 6188800 9806500 5665200 6509300 8254100 6367900 10901000 602670 11163000 9256400 5354000 6447400 9617600 5878100 6493100 7882300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6839200 11685000 0 10985000 9747300 4768000 6188800 9806500 5665200 6509300 8254100 6367900 10901000 602670 11163000 9256400 5354000 6447400 9617600 5878100 6493100 7882300 1 1 0 1 1 1 1 1 1 1 1 837350000 565640000 271710000 10823 1240 10051 56681;56682 68743 68743 1 KYDAFLASESLIK Unmodified 1483.7922 0.79224564 1381 P62906 RPL10A 60S ribosomal protein L10a yes yes 0 0 0 1 By MS/MS By MS/MS 6.33 2.11 2 2 2 6 6 9 9 65.331 65.516 2;3;4 1.2449E-21 20444 20211116_3436_TMUAki_TMT10x_P_F8 212.59 198.78 517590000 892740000 3467700 863100000 666390000 926450000 587940000 626730000 659080000 629360000 684250000 481940000 832910000 45571000 883550000 637030000 933160000 602670000 652420000 668280000 614560000 659290000 27 27 20 27 27 27 27 27 27 27 27 325440000 559260000 1264300 533800000 457740000 742970000 412740000 375800000 418650000 393040000 420340000 303010000 521750000 27740000 549490000 437700000 735740000 421190000 401140000 425710000 383150000 405430000 13 13 9 13 13 13 13 13 13 13 13 192150000 333480000 2203400 329300000 208650000 183480000 175200000 250930000 240420000 236320000 263920000 178920000 311160000 17831000 334060000 199330000 197430000 181480000 251280000 242570000 231410000 253860000 14 14 11 14 14 14 14 14 14 14 14 75711000000 46260000000 29451000000 10824 1381 10052 56683;56684;56685;56686;56687;56688;56689;56690;56691;56692;56693;56694;56695;56696;56697;56698;56699;56700 68744;68745;68746;68747;68748;68749;68750;68751;68752;68753;68754;68755;68756;68757;68758;68759;68760;68761;68762;68763;68764;68765;68766;68767;68768;68769;68770 68756 27 KYEAIQLTFK Unmodified 1239.6863 0.68632401 3219 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 57.138 56.944 3 1.1038E-07 18401 20211116_3429_TMUAki_TMT10x_P_F2 116.6 82.07 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10825 3219 10053 56701;56702;56703;56704 68771;68772;68773;68774 68772 4 KYEDICPSTHNMDVPNIK Oxidation (M) 2175.9929 0.99288907 1404 P63241;P63241-2;Q6IS14;Q9GZV4 EIF5A;EIF5AL1;EIF5A2 Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like;Eukaryotic translation initiation factor 5A-2 yes no 0 0 1 1 By MS/MS By MS/MS 6.4 1.02 2 4 2 2 6 4 42.643 42.822 4;5 2.7376E-17 10494 20211116_3434_TMUAki_TMT10x_P_F6 144.68 127.6 25235000 39074000 176370 57731000 57680000 59822000 30808000 27723000 36171000 27638000 35398000 23497000 36530000 2367400 57609000 54634000 60093000 32821000 29804000 36536000 26996000 34171000 13 13 5 13 13 13 13 13 13 13 13 17558000 26548000 100990 41064000 52204000 54022000 25032000 19752000 25882000 19808000 24613000 16349000 24827000 1708100 41061000 49372000 53464000 26838000 21814000 26248000 19343000 23782000 8 8 3 8 8 8 8 8 8 8 8 7676900 12526000 75381 16667000 5476800 5800800 5776500 7970500 10289000 7830400 10786000 7148400 11703000 659310 16548000 5262400 6628500 5983400 7990100 10288000 7653400 10389000 5 5 2 5 5 5 5 5 5 5 5 5224500000 4466000000 758480000 10826 1404 10054 56705;56706;56707;56708;56709;56710;56711;56712;56713;56714 68775;68776;68777;68778;68779;68780;68781;68782;68783;68784;68785;68786;68787 68776 1886 13 KYEDICPSTHNMDVPNIK Unmodified 2159.998 0.99797445 1404 P63241;P63241-2;Q6IS14;Q9GZV4 EIF5A;EIF5AL1;EIF5A2 Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like;Eukaryotic translation initiation factor 5A-2 yes no 0 0 0 1 By MS/MS By MS/MS 6.56 1.07 2 2 3 2 5 4 48.267 48.518 4;5 3.0662E-09 14756 20211116_3435_TMUAki_TMT10x_P_F7 120.29 104.65 41567000 67597000 577630 94062000 75003000 79276000 46728000 49888000 50600000 45557000 55776000 38703000 63174000 3985500 93868000 71211000 81013000 48997000 52076000 51492000 44672000 53645000 11 11 6 11 11 11 11 11 11 11 11 29959000 47941000 388810 63469000 67262000 72374000 41733000 38597000 39250000 34432000 40878000 27895000 44792000 2973300 63786000 63850000 72422000 43590000 40823000 40096000 33799000 39383000 8 8 4 8 8 8 8 8 8 8 8 11607000 19656000 188820 30592000 7741800 6901700 4995000 11291000 11351000 11125000 14898000 10808000 18382000 1012200 30082000 7360900 8590900 5407000 11253000 11395000 10872000 14262000 3 3 2 3 3 3 3 3 3 3 3 5360500000 2887200000 2473300000 10827 1404 10054 56715;56716;56717;56718;56719;56720;56721;56722;56723 68788;68789;68790;68791;68792;68793;68794;68795;68796;68797;68798 68794 11 KYEDICPSTHNMDVPNIKR Unmodified 2316.0991 0.099085478 1404 P63241;P63241-2;Q6IS14;Q9GZV4 EIF5A;EIF5AL1;EIF5A2 Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like;Eukaryotic translation initiation factor 5A-2 yes no 0 0 0 2 By MS/MS 7.5 0.5 1 1 2 42.459 42.787 5 0.0064615 11202 20211116_3436_TMUAki_TMT10x_P_F8 56.54 42.079 1679900 2971500 31704 3244200 5256100 6269700 3164900 2925600 2861600 2465800 2776300 1564200 2773800 205670 3335600 4988300 6125400 3310300 3129600 2921400 2427200 2680900 2 2 1 2 2 2 2 2 2 2 2 1679900 2971500 31704 3244200 5256100 6269700 3164900 2925600 2861600 2465800 2776300 1564200 2773800 205670 3335600 4988300 6125400 3310300 3129600 2921400 2427200 2680900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 334900000 334900000 0 10828 1404 10055 56724;56725 68799;68800 68800 2 KYEEIDNAPEER Unmodified 1491.6842 0.68415175 1097 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 33.977 33.746 3 5.8077E-09 10511 20211116_3441_TMUAki_TMT10x_S_F3 147.35 125.66 1126100 1759400 3.5683 2158400 2659700 1200600 1106600 740670 992940 630240 1374200 1048500 1643200 113650 2159400 2511100 1271800 1200100 772970 1028600 620080 1313800 2 2 1 2 2 2 2 2 2 2 2 725900 1065600 0 1347900 2228700 891470 677340 472180 629970 399250 860720 675870 995350 80031 1348300 2097900 926910 766700 499050 651150 392930 823160 1 1 0 1 1 1 1 1 1 1 1 400210 693850 3.5683 810430 431050 309140 429230 268490 362960 230990 513470 372630 647870 33615 811040 413270 344940 433430 273910 377490 227150 490660 1 1 1 1 1 1 1 1 1 1 1 94774000 60383000 34391000 10829 1097 10056 56726;56727;56728 68801;68802;68803 68803 3 KYEEVAR Unmodified 893.46068 0.46068117 526;527;525;1413;578;579 P06753-2;P06753-3;P06753-5;P06753-4;P06753-7;P06753-6;P09493-4;P09493;P09493-6;P06753;P09493-5;P67936;P67936-2;P07951;P07951-2;CON__Q3SX28;P07951-3 TPM3;TPM1;TPM4;TPM2 Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain;Tropomyosin beta chain no no 0 0 0 1 By MS/MS 4 0 1 1 29.163 29.207 3 0.038418 6045 20211116_3431_TMUAki_TMT10x_P_F4 61.679 27.59 + 603140 994460 0 793310 684490 983070 631460 421580 463010 502700 694550 561550 927180 47013 826350 654720 977160 638070 459390 486620 487620 662840 1 1 0 1 1 1 1 1 1 1 1 603140 994460 0 793310 684490 983070 631460 421580 463010 502700 694550 561550 927180 47013 826350 654720 977160 638070 459390 486620 487620 662840 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14384000 14384000 0 10830 526;527;578;525;579;1413 10057 56729 68804 68804 1 KYEFGESDLR Unmodified 1242.5881 0.58806652 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 40.522 40.72 3 0.00066048 11048 20211116_3442_TMUAki_TMT10x_S_F4 93.839 69.457 4096000 5944100 82449 8841700 3695700 3421400 3403000 6295400 7830400 5066300 7046500 3814400 5557300 410820 8734300 3541300 3884400 3604100 6218900 7744500 4998700 6821700 4 4 4 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4096000 5944100 82449 8841700 3695700 3421400 3403000 6295400 7830400 5066300 7046500 3814400 5557300 410820 8734300 3541300 3884400 3604100 6218900 7744500 4998700 6821700 4 4 4 4 4 4 4 4 4 4 4 71871000 0 71871000 10831 1695 10058 56730;56731;56732 68805;68806;68807;68808;68809;68810 68807 6 KYEGGRELSDFISYLQR Unmodified 2060.0327 0.032703697 868 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 2 By matching By MS/MS 1.5 0.5 1 1 1 1 66.846 66.738 4 3.1232E-21 21184 20211116_3440_TMUAki_TMT10x_S_F2 164.02 128.13 6814900 11861000 22437 11963000 23134000 5339700 6664300 8243600 6250400 6361700 9266700 6345100 11068000 762520 12098000 21766000 5913500 7608200 8178600 6483900 6290700 8845800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6814900 11861000 22437 11963000 23134000 5339700 6664300 8243600 6250400 6361700 9266700 6345100 11068000 762520 12098000 21766000 5913500 7608200 8178600 6483900 6290700 8845800 2 2 1 2 2 2 2 2 2 2 2 1451700000 645970000 805710000 10832 868 10059 56733;56734 68811;68812 68811 2 KYELGRPAANTK Unmodified 1346.7306 0.73064844 1338 P62241 RPS8 40S ribosomal protein S8 yes yes 0 0 0 2 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 32.188 32.124 4 5.5437E-15 6811 20211116_3428_TMUAki_TMT10x_P_F1 181.76 147.01 2180800 3695500 31830 3012800 3499000 3337600 2790000 2016600 2384400 1917500 2792700 2030800 3445800 228610 3126600 3339100 3350400 2854500 2114000 2457900 1876800 2681300 3 3 2 3 3 3 3 3 3 3 3 1211600 2046400 8785 1670000 2458600 2383700 1600500 1150700 1320200 1097700 1578400 1128100 1908100 125780 1740900 2336300 2356700 1659600 1230600 1364500 1074300 1514600 2 2 1 2 2 2 2 2 2 2 2 969280 1649100 23045 1342800 1040400 953840 1189500 865870 1064200 819760 1214300 902670 1537700 102830 1385700 1002800 993720 1194900 883420 1093400 802520 1166700 1 1 1 1 1 1 1 1 1 1 1 241610000 142820000 98792000 10833 1338 10060 56735;56736;56737 68813;68814;68815 68813 3 KYEMFAQTLQQSR Oxidation (M) 1644.793 0.7929907 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 1 1 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 46.209 46.126 3 2.3052E-06 12576 20211116_3436_TMUAki_TMT10x_P_F8 110.55 95.881 18462000 33021000 252570 38845000 56345000 62584000 28325000 46017000 49942000 32963000 35409000 17191000 30834000 2200400 39572000 53330000 61920000 30866000 47232000 49345000 32731000 34608000 9 9 5 9 9 9 9 9 9 9 9 14590000 25909000 137560 30800000 52582000 59503000 25182000 36670000 39804000 26128000 28128000 13585000 24195000 1818800 31505000 49735000 58334000 27429000 38120000 39440000 25952000 27496000 6 6 3 6 6 6 6 6 6 6 6 3872000 7111400 115010 8044400 3762200 3081100 3143400 9346700 10138000 6835100 7281200 3605700 6639200 381570 8066500 3595800 3585700 3437300 9111700 9905800 6779000 7112300 3 3 2 3 3 3 3 3 3 3 3 3842600000 3010800000 831820000 10834 1235 10061 56738;56739;56740;56741;56742;56743 68816;68817;68818;68819;68820;68821;68822;68823;68824 68821 1672 9 KYEMFAQTLQQSR Unmodified 1628.7981 0.79807608 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 1 By MS/MS By MS/MS 2.2 0.748 1 2 2 2 3 52.445 52.182 3 2.1206E-19 18051 20211116_3441_TMUAki_TMT10x_S_F3 192.32 162.33 15532000 28637000 96897 35351000 23298000 17579000 14600000 12484000 10410000 11971000 20859000 14463000 26746000 1485200 35324000 22127000 18890000 15135000 12934000 11145000 11713000 19799000 3 3 2 3 3 3 3 3 3 3 3 5435500 9399900 0 11170000 13935000 11648000 8911300 4179300 3573800 4189200 7285000 5061000 8777700 568090 11277000 13235000 11669000 9136600 4626500 4001000 4091000 6912700 1 1 0 1 1 1 1 1 1 1 1 10097000 19237000 96897 24182000 9363400 5930300 5688900 8304500 6836200 7782200 13574000 9401700 17969000 917120 24047000 8891600 7220500 5998200 8308000 7143500 7622000 12886000 2 2 2 2 2 2 2 2 2 2 2 1973200000 1102400000 870800000 10835 1235 10061 56744;56745;56746;56747;56748 68825;68826;68827;68828;68829 68828 5 KYEQGFITDPVVLSPK Unmodified 1819.972 0.97200092 640 P12268 IMPDH2 Inosine-5'-monophosphate dehydrogenase 2 yes yes 0 0 0 1 By MS/MS 7.5 0.5 2 2 4 61.544 61.994 3;4 7.6023E-08 20167 20211116_3435_TMUAki_TMT10x_P_F7 116.43 86.372 24280000 43600000 217410 39238000 28719000 54082000 30785000 28600000 27810000 28737000 29902000 22609000 40667000 2232400 40559000 27599000 53607000 31026000 30368000 28496000 28060000 28780000 4 4 3 4 4 4 4 4 4 4 4 24280000 43600000 217410 39238000 28719000 54082000 30785000 28600000 27810000 28737000 29902000 22609000 40667000 2232400 40559000 27599000 53607000 31026000 30368000 28496000 28060000 28780000 4 4 3 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2798600000 2798600000 0 10836 640 10062 56749;56750;56751;56752 68830;68831;68832;68833 68831 4 KYETVIMPVFGIATPFHIATIK Oxidation (M) 2491.3549 0.35488946 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 1 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 76.756 76.754 4 1.7036E-14 24478 20211116_3444_TMUAki_TMT10x_S_F5 134.47 116.52 25760000 40065000 122870 40216000 28583000 36864000 27200000 25178000 24599000 26510000 31070000 23985000 37386000 2086800 40966000 27366000 37499000 27582000 26229000 25369000 25836000 29772000 4 4 1 4 4 4 4 4 4 4 4 11878000 18653000 122870 18725000 11590000 22789000 12231000 12101000 11570000 11952000 13503000 11061000 17405000 1092900 19158000 11136000 22725000 12352000 12838000 11868000 11679000 12966000 2 2 1 2 2 2 2 2 2 2 2 13882000 21412000 0 21492000 16993000 14076000 14970000 13077000 13028000 14558000 17567000 12924000 19980000 993860 21808000 16230000 14774000 15230000 13390000 13500000 14157000 16806000 2 2 0 2 2 2 2 2 2 2 2 7148800000 4326600000 2822200000 10837 3317 10063 56753;56754;56755;56756 68834;68835;68836;68837 68836 3277 4 KYFTCDEGHGIFVR Unmodified 1727.809 0.80897511 1694 Q14203;Q14203-6;Q14203-3;Q14203-4 DCTN1 Dynactin subunit 1 yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 45.072 45.277 4 3.6629E-19 13920 20211116_3446_TMUAki_TMT10x_S_F7 169.4 141.9 6138600 10399000 86928 10300000 8560200 8775500 5820800 10612000 9334500 8395900 9362100 5716300 9703200 623860 10492000 8144300 9075200 6156300 10631000 9343500 8291200 9030400 4 4 4 4 4 4 4 4 4 4 4 1440700 2318400 5893.2 2236000 3648600 4296400 2104100 2837600 2429300 2070200 2251500 1341400 2163000 155860 2317700 3460000 4217000 2225100 2935700 2450800 2053500 2177400 1 1 1 1 1 1 1 1 1 1 1 4697900 8080800 81034 8063900 4911600 4479100 3716800 7774800 6905300 6325700 7110600 4374800 7540200 468010 8174100 4684400 4858200 3931300 7695200 6892700 6237700 6853000 3 3 3 3 3 3 3 3 3 3 3 738460000 210690000 527770000 10838 1694 10064 56757;56758;56759 68838;68839;68840;68841 68839 4 KYGETANECGEAFFFYGK Unmodified 2116.92 0.9200417 1091 P49321;P49321-3;P49321-2 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 1 By MS/MS By MS/MS 6.7 0.9 1 3 4 2 6 4 63.438 63.694 3;4 2.1064E-12 21376 20211116_3446_TMUAki_TMT10x_S_F7 136.66 124.87 88880000 145400000 691370 151970000 88708000 119130000 92311000 80656000 77900000 86370000 98828000 82757000 135700000 7400300 154080000 85151000 122520000 93000000 84118000 80623000 84118000 94688000 12 12 6 12 12 12 12 12 12 12 12 43151000 69259000 306060 72653000 41893000 76325000 43950000 38687000 37504000 42698000 46786000 40177000 64639000 3434400 73934000 40212000 76682000 44274000 41354000 38765000 41536000 44845000 7 7 3 7 7 7 7 7 7 7 7 45729000 76138000 385310 79321000 46816000 42805000 48361000 41969000 40396000 43672000 52042000 42580000 71057000 3965900 80149000 44938000 45840000 48727000 42764000 41858000 42582000 49843000 5 5 3 5 5 5 5 5 5 5 5 21710000000 10849000000 10861000000 10839 1091 10065 56760;56761;56762;56763;56764;56765;56766;56767;56768;56769 68842;68843;68844;68845;68846;68847;68848;68849;68850;68851;68852;68853 68850 12 KYGGPPPDSVYSGQQPSVGTEIFVGK Unmodified 2693.3337 0.33369632 271;272 O60506;O60506-2;O60506-3;O60506-4 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 1 By MS/MS By MS/MS 6.9 2.02 1 4 5 5 5 62.209 62.483 3;4 2.809E-30 19128 20211116_3436_TMUAki_TMT10x_P_F8 166.91 148.2 31842000 50458000 466180 52419000 34549000 45475000 35937000 31482000 28643000 32730000 36502000 29651000 47090000 2925900 53233000 33182000 46441000 36154000 32753000 29737000 31915000 34969000 15 15 9 15 15 15 15 15 15 15 15 18097000 27747000 351060 29996000 19389000 31026000 22275000 14820000 12234000 15653000 19366000 16853000 25900000 1770700 30457000 18685000 31180000 22133000 15911000 13138000 15253000 18461000 6 6 3 6 6 6 6 6 6 6 6 13745000 22711000 115110 22423000 15159000 14449000 13662000 16663000 16409000 17077000 17136000 12798000 21190000 1155200 22776000 14498000 15261000 14021000 16842000 16599000 16662000 16508000 9 9 6 9 9 9 9 9 9 9 9 10497000000 5520800000 4975800000 10840 271;272 10066 56770;56771;56772;56773;56774;56775;56776;56777;56778;56779 68854;68855;68856;68857;68858;68859;68860;68861;68862;68863;68864;68865;68866;68867 68857 14 KYGGPPPDSVYSGQQPSVGTEIFVGKIPR Unmodified 3059.5716 0.57163518 271;272 O60506;O60506-2;O60506-3;O60506-4 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 2 By MS/MS By MS/MS 2 0 3 1 2 62.602 62.347 4;5 7.7795E-25 19451 20211116_3440_TMUAki_TMT10x_S_F2 144.18 131.75 6366400 11899000 38480 9747200 10024000 10459000 7194600 10238000 9535300 8993200 9796900 5927800 11095000 585920 10106000 9541200 10606000 7518200 10383000 9607400 8834500 9442600 4 4 3 4 4 4 4 4 4 4 4 2459200 4426200 0 3380500 2690600 5724800 3092900 3265800 3269300 3244700 3652800 2289500 4126200 178130 3557500 2588100 5632200 3121700 3443900 3331900 3169800 3511800 1 1 0 1 1 1 1 1 1 1 1 3907200 7472600 38480 6366700 7333800 4734200 4101700 6972200 6265900 5748400 6144100 3638300 6968600 407790 6548800 6953100 4973900 4396600 6939300 6275500 5664600 5930800 3 3 3 3 3 3 3 3 3 3 3 1050100000 243280000 806850000 10841 271;272 10067 56780;56781;56782 68868;68869;68870;68871 68871 4 KYGGPPPDSVYSGVQPGIGTEVFVGK Unmodified 2634.333 0.33296804 211 O43390;O43390-2;O43390-4 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 1 By MS/MS By MS/MS 5.5 3.2 2 1 3 4 2 66.055 66.157 3;4 7.9781E-18 22620 20211116_3439_TMUAki_TMT10x_S_F1 135.62 121.46 22774000 38973000 339270 32218000 28318000 46801000 30172000 40383000 34337000 35529000 33996000 21206000 36340000 2059100 33563000 27209000 46634000 30637000 41238000 34738000 34899000 32805000 13 13 6 13 13 13 13 13 13 13 13 13437000 22325000 263140 18848000 14874000 32898000 18206000 24041000 19723000 21151000 19883000 12513000 20819000 1268300 19683000 14354000 32449000 18340000 24804000 20004000 20776000 19175000 8 8 5 8 8 8 8 8 8 8 8 9336600 16648000 76129 13370000 13444000 13903000 11966000 16343000 14614000 14378000 14113000 8693500 15522000 790800 13880000 12855000 14185000 12297000 16434000 14734000 14123000 13630000 5 5 1 5 5 5 5 5 5 5 5 7014100000 4656300000 2357800000 10842 211 10068 56783;56784;56785;56786;56787;56788 68872;68873;68874;68875;68876;68877;68878;68879;68880;68881;68882;68883;68884 68880 13 KYGGSVGSQPPPVAPEPGPVPSSPSQEPPTKR Unmodified 3210.6309 0.63094098 1510 Q04323;Q04323-2 UBXN1 UBX domain-containing protein 1 yes no 0 0 0 2 By MS/MS By MS/MS 7.86 0.35 1 6 4 3 42.804 42.958 4;5;6 6.1887E-46 11218 20211116_3436_TMUAki_TMT10x_P_F8 194.62 189.51 6102900 10673000 76331 12515000 10312000 10362000 6602300 7994100 9448200 7704400 8735300 5683000 9966200 634240 12605000 9799200 10636000 6979100 8238600 9462100 7536500 8448700 12 12 11 12 12 12 12 12 12 12 12 3269000 5308400 31982 6404900 8482200 8239200 5194300 3925100 4575800 3938600 4307500 3044000 4957400 373840 6484000 8052400 8183500 5421600 4208900 4672700 3846100 4163600 6 6 6 6 6 6 6 6 6 6 6 2834000 5364900 44349 6110500 1830200 2122600 1408000 4068900 4872400 3765800 4427800 2639000 5008800 260400 6121400 1746800 2452000 1557500 4029700 4789500 3690400 4285100 6 6 5 6 6 6 6 6 6 6 6 1940000000 1439000000 500980000 10843 1510 10069 56789;56790;56791;56792;56793;56794;56795 68885;68886;68887;68888;68889;68890;68891;68892;68893;68894;68895;68896 68886 12 KYGVDLIR Unmodified 962.55492 0.5549159 2026 Q6UXN9 WDR82 WD repeat-containing protein 82 yes yes 0 0 0 1 By MS/MS 8 0 1 1 42.359 42.423 3 0.10462 10521 20211116_3447_TMUAki_TMT10x_S_F8 37.344 13.314 1828800 2992900 20093 3691700 1689600 1368900 1652300 2307600 2333500 2079900 2918900 1702900 2795300 168390 3682100 1620400 1558900 1699100 2292000 2364900 2040800 2797600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1828800 2992900 20093 3691700 1689600 1368900 1652300 2307600 2333500 2079900 2918900 1702900 2795300 168390 3682100 1620400 1558900 1699100 2292000 2364900 2040800 2797600 1 1 1 1 1 1 1 1 1 1 1 36139000 0 36139000 10844 2026 10070 56796 68897 68897 1 KYGYILPDITKDELFK Unmodified 1942.0452 0.045165864 3044 Q9P015 MRPL15 39S ribosomal protein L15, mitochondrial yes yes 0 0 0 2 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 72.238 72.181 4 5.2418E-15 22989 20211116_3428_TMUAki_TMT10x_P_F1 151.62 134.14 9958200 17051000 148330 15770000 8457800 10249000 9075300 3888500 3781200 4067700 9324900 9273100 15906000 942820 16096000 8134200 10639000 9009300 4279900 4275100 3965300 8823800 2 2 2 2 2 2 2 2 2 2 2 5827000 9784200 125580 9029700 3185500 5526500 4086500 2076800 2156600 2300900 5630800 5426500 9126900 563140 9212700 3084600 5768600 4038200 2292300 2401700 2237900 5324300 1 1 1 1 1 1 1 1 1 1 1 4131100 7266700 22749 6740000 5272300 4722900 4988800 1811700 1624600 1766800 3694100 3846700 6778600 379680 6882900 5049600 4870400 4971100 1987600 1873400 1727400 3499500 1 1 1 1 1 1 1 1 1 1 1 1240300000 608080000 632220000 10845 3044 10071 56797;56798 68898;68899 68898 2 KYHNVGLSK Unmodified 1044.5716 0.5716286 1675 Q14103;Q14103-3;Q14103-4;Q14103-2 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 31.743 31.656 4 0.0010389 8570 20211116_3439_TMUAki_TMT10x_S_F1 84.268 61.042 2953500 5129400 274.75 4379600 4110900 5281100 3438600 2286800 2658400 2674400 2969500 2749900 4783500 244810 4534400 3923800 5257100 3498900 2487800 2749700 2596000 2854900 2 2 1 2 2 2 2 2 2 2 2 2503100 4272000 0 3536300 3541800 4770400 2800800 1898800 2222100 2226100 2408400 2330500 3983500 205540 3678000 3376300 4719100 2861800 2085300 2292600 2160700 2317500 1 1 0 1 1 1 1 1 1 1 1 450420 857370 274.75 843320 569170 510700 637760 388010 436300 448270 561070 419390 799970 39262 856340 547490 538030 637080 402500 457100 435320 537380 1 1 1 1 1 1 1 1 1 1 1 289950000 204960000 84992000 10846 1675 10072 56799;56800 68900;68901 68901 2 KYIPGTK Unmodified 805.46979 0.46978929 1463 P99999;CON__P62894 CYCS Cytochrome c yes no 0 0 0 1 By MS/MS 2 0 1 1 35.609 35.383 3 0.025825 9648 20211116_3429_TMUAki_TMT10x_P_F2 71.501 45.764 1092900 1665500 6441.5 1816700 1635300 1766000 1161700 1044900 1174300 954820 1338900 1017600 1554700 104210 1841900 1556500 1786000 1203500 1096100 1200000 936240 1286500 1 1 1 1 1 1 1 1 1 1 1 1092900 1665500 6441.5 1816700 1635300 1766000 1161700 1044900 1174300 954820 1338900 1017600 1554700 104210 1841900 1556500 1786000 1203500 1096100 1200000 936240 1286500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 82379000 82379000 0 10847 1463 10073 56801 68902 68902 1 KYLAGADPSTVEMCYPPIIQSGGNYNLK Oxidation (M) 3101.4838 0.48380773 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 1 1 By MS/MS By MS/MS 8 0 2 1 1 68.616 68.592 4 2.0539E-18 21668 20211116_3436_TMUAki_TMT10x_P_F8 136.71 126.1 4491400 8093100 27536 7184700 5552000 9400900 5933100 6826700 6408300 6827400 6502300 4182000 7548300 398900 7426900 5333800 9382400 6013000 7070800 6501800 6668000 6269600 3 3 2 3 3 3 3 3 3 3 3 3000500 5122400 27158 4505600 3328600 7262100 4047000 4477300 4193200 4400100 4113100 2793800 4777400 264680 4681300 3210400 7165500 4072000 4690500 4256600 4300500 3970300 2 2 1 2 2 2 2 2 2 2 2 1490900 2970700 378.49 2679100 2223400 2138800 1886100 2349300 2215000 2427300 2389200 1388200 2770900 134220 2745600 2123500 2216900 1941000 2380300 2245200 2367400 2299400 1 1 1 1 1 1 1 1 1 1 1 2204400000 996510000 1207900000 10848 3317 10074 56802;56803 68903;68904;68905 68904 3278 3 KYLLGVQPAWGSAEAVDIDR Unmodified 2187.1324 0.13241774 1559 Q10713;Q10713-2 PMPCA Mitochondrial-processing peptidase subunit alpha yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 68.211 68.402 3 1.5243E-07 21585 20211116_3436_TMUAki_TMT10x_P_F8 94.313 83.034 4606400 7449200 73240 6916600 5460500 7308200 5309400 5411400 4767600 5279600 5643900 4289600 6948900 462120 7099500 5236400 7378300 5376700 5593800 4905000 5161800 5417400 2 2 2 2 2 2 2 2 2 2 2 2394300 3820000 12457 3276900 2361700 4620300 2766300 3255600 2757300 2831800 2900400 2229500 3562400 209660 3401500 2275500 4593400 2784500 3366300 2810500 2783100 2793500 1 1 1 1 1 1 1 1 1 1 1 2212100 3629200 60783 3639600 3098700 2687800 2543100 2155800 2010400 2447900 2743500 2060100 3386500 252460 3698000 2960900 2785000 2592100 2227500 2094500 2378700 2623900 1 1 1 1 1 1 1 1 1 1 1 827010000 384940000 442070000 10849 1559 10075 56804;56805;56806 68906;68907 68906 2 KYNPTWHCIVGR Unmodified 1529.7562 0.75615168 1399;2461 P63167;Q96FJ2 DYNLL1;DYNLL2 Dynein light chain 1, cytoplasmic;Dynein light chain 2, cytoplasmic no no 0 0 0 1 By MS/MS 4 0 2 2 39.546 39.597 3;4 2.302E-07 10184 20211116_3431_TMUAki_TMT10x_P_F4 126.34 111.47 2264600 4169000 0 6157400 7925200 5710300 4306000 2401400 2315800 2034800 3144700 2108100 3897500 211110 6134400 7504500 5770500 4495400 2597600 2472500 2002400 3007900 1 1 0 1 1 1 1 1 1 1 1 2264600 4169000 0 6157400 7925200 5710300 4306000 2401400 2315800 2034800 3144700 2108100 3897500 211110 6134400 7504500 5770500 4495400 2597600 2472500 2002400 3007900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1540500000 1540500000 0 10850 1399;2461 10076 56807;56808 68908;68909 68908 2 KYPDRVPVIVEK Unmodified 1441.8293 0.82929985 408 O95166;Q9H0R8;Q9H0R8-2 GABARAP;GABARAPL1 Gamma-aminobutyric acid receptor-associated protein;Gamma-aminobutyric acid receptor-associated protein-like 1 yes no 0 0 0 2 By MS/MS By MS/MS 8 0 2 1 1 43.516 43.609 4 8.5619E-08 11462 20211116_3436_TMUAki_TMT10x_P_F8 138.55 107.32 6413300 9611700 106310 12060000 11147000 9199600 6781500 4831600 6022800 4858400 7388700 5972100 8977900 690210 12088000 10584000 9450200 7083500 5133700 6208800 4743800 7085300 3 3 2 3 3 3 3 3 3 3 3 4543400 6687900 106310 8541800 9642500 7963400 5169500 3503700 4247900 3396700 5160800 4231100 6247400 547170 8574400 9139600 8048100 5449000 3784200 4394300 3321800 4950200 2 2 2 2 2 2 2 2 2 2 2 1869900 2923900 0 3518400 1504100 1236100 1611900 1328000 1774900 1461600 2227900 1741000 2730500 143050 3513200 1444500 1402100 1634500 1349600 1814600 1422000 2135100 1 1 0 1 1 1 1 1 1 1 1 201430000 99105000 102320000 10851 408 10077 56809;56810 68910;68911;68912 68910 3 KYPSIIVNCVEEKPK Unmodified 1802.9601 0.96005603 2772 Q9H0D6 XRN2 5'-3' exoribonuclease 2 yes yes 0 0 0 2 By MS/MS 1 0 1 1 51.196 51.196 4 0.012096 14525 20211116_3428_TMUAki_TMT10x_P_F1 58.159 41.852 3225300 5672600 20647 5784900 7078400 7844300 4849100 4303100 4026800 3776700 4421800 3003200 5293600 340610 5924400 6732300 7784700 5009800 4538000 4146600 3710200 4253300 1 1 1 1 1 1 1 1 1 1 1 3225300 5672600 20647 5784900 7078400 7844300 4849100 4303100 4026800 3776700 4421800 3003200 5293600 340610 5924400 6732300 7784700 5009800 4538000 4146600 3710200 4253300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 382610000 382610000 0 10852 2772 10078 56811 68913 68913 1 KYQLNLPPYPDTECVYR Unmodified 2155.0408 0.040825542 2234 Q8NCW5;Q8NCW5-2 APOA1BP NAD(P)H-hydrate epimerase yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 59.511 59.6 3 2.4057E-08 17481 20211116_3447_TMUAki_TMT10x_S_F8 119.47 115.63 8317000 14166000 60055 14302000 9917400 10517000 10108000 7490800 7139500 7402100 10056000 7744100 13219000 729600 14524000 9515200 10880000 10151000 7766300 7496600 7233000 9610800 3 3 2 3 3 3 3 3 3 3 3 2726600 4849700 0 4560000 3382300 5147800 3676100 2434700 2401300 2478900 3247300 2538400 4524200 196920 4681200 3248000 5147000 3674000 2613700 2528700 2419200 3106400 1 1 0 1 1 1 1 1 1 1 1 5590400 9316500 60055 9742100 6535100 5369600 6431600 5056200 4738200 4923200 6809100 5205700 8694900 532690 9843100 6267200 5732900 6476800 5152600 4967900 4813700 6504400 2 2 2 2 2 2 2 2 2 2 2 906740000 592680000 314060000 10853 2234 10079 56812;56813 68914;68915;68916 68915 3 KYTELPHGAISEDQAVGPADIPCDSTGQTST Unmodified 3244.483 0.48301569 2822 Q9H773 DCTPP1 dCTP pyrophosphatase 1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.71 1.03 1 2 2 2 4 3 55.348 55.417 4 8.4054E-07 15711 20211116_3444_TMUAki_TMT10x_S_F5 76.859 74.451 9797800 17157000 200120 16708000 11552000 15800000 10685000 13175000 13974000 13023000 13454000 9123700 16008000 964650 17063000 11063000 16093000 10986000 13523000 14054000 12725000 12995000 11 11 6 11 11 11 11 11 11 11 11 4949500 8533300 121560 8200500 6590300 10988000 6889300 6509100 6800200 6379200 6503600 4609200 7961300 523780 8431100 6332500 10921000 6969700 6840200 6911400 6235600 6282900 6 6 4 6 6 6 6 6 6 6 6 4848300 8624100 78557 8507200 4962000 4812200 3796200 6665700 7173800 6643600 6950700 4514500 8046800 440870 8631700 4730900 5171900 4016100 6683000 7142400 6489400 6712000 5 5 2 5 5 5 5 5 5 5 5 6317700000 3859800000 2457900000 10854 2822 10080 56814;56815;56816;56817;56818;56819;56820 68917;68918;68919;68920;68921;68922;68923;68924;68925;68926;68927 68924 11 KYTGEDFDEDLR Unmodified 1486.6576 0.65760265 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 1 By MS/MS 3 0.816 1 1 1 3 43.656 43.607 3 4.9602E-06 13316 20211116_3430_TMUAki_TMT10x_P_F3 111.83 85.06 563170 981550 10361 1542700 2443500 2018600 1120300 1035300 1236800 790470 1109400 524450 917990 82682 1541300 2310300 2005000 1209200 1094900 1248600 782100 1074100 1 1 1 1 1 1 1 1 1 1 1 563170 981550 10361 1542700 2443500 2018600 1120300 1035300 1236800 790470 1109400 524450 917990 82682 1541300 2310300 2005000 1209200 1094900 1248600 782100 1074100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 246390000 246390000 0 10855 1695 10081 56821;56822;56823 68928 68928 1 KYTLPPGVDPTQVSSSLSPEGTLTVEAPMPK Oxidation (M) 3241.6428 0.6428108 492 P04792 HSPB1 Heat shock protein beta-1 yes yes 0 0 1 1 By MS/MS 8 0 1 1 72.654 72.482 4 2.1534E-06 22868 20211116_3447_TMUAki_TMT10x_S_F8 68.516 60.111 1202600 2365800 17261 1801600 1841300 1959300 1959000 1705000 1687900 1727000 1750300 1119900 2205400 124740 1880100 1769500 1980600 1972600 1747000 1731200 1685800 1686500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1202600 2365800 17261 1801600 1841300 1959300 1959000 1705000 1687900 1727000 1750300 1119900 2205400 124740 1880100 1769500 1980600 1972600 1747000 1731200 1685800 1686500 1 1 1 1 1 1 1 1 1 1 1 938820000 0 938820000 10856 492 10082 56824 68929 68929 394 1 KYVATLGVEVHPLVFHTNR Unmodified 2179.1902 0.19020739 1368 P62826 RAN GTP-binding nuclear protein Ran yes yes 0 0 0 1 By MS/MS By MS/MS 3.7 1.4 5 6 7 3 2 10 13 51.282 51.279 3;4;5 3.0646E-51 16138 20211116_3429_TMUAki_TMT10x_P_F2 234.51 228.48 71605000 112210000 2179000 131270000 95967000 119630000 80880000 86250000 87667000 79759000 82756000 66686000 104780000 7530000 132390000 91754000 121840000 83039000 89184000 88715000 78164000 79983000 24 24 14 24 24 24 24 24 24 24 24 44532000 67830000 1815500 80444000 72815000 97300000 56847000 51423000 54764000 49335000 49793000 41477000 63340000 5201600 81428000 69524000 97052000 58433000 54536000 55628000 48269000 48188000 10 10 6 10 10 10 10 10 10 10 10 27073000 44382000 363500 50822000 23152000 22330000 24033000 34827000 32903000 30424000 32962000 25209000 41438000 2328400 50966000 22230000 24787000 24606000 34647000 33087000 29895000 31796000 14 14 8 14 14 14 14 14 14 14 14 62958000000 34421000000 28537000000 10857 1368 10083 56825;56826;56827;56828;56829;56830;56831;56832;56833;56834;56835;56836;56837;56838;56839;56840;56841;56842;56843;56844;56845;56846;56847 68930;68931;68932;68933;68934;68935;68936;68937;68938;68939;68940;68941;68942;68943;68944;68945;68946;68947;68948;68949;68950;68951 68930 22 KYVATLGVEVHPLVFHTNRGPIK Unmodified 2574.4435 0.44346197 1368 P62826 RAN GTP-binding nuclear protein Ran yes yes 0 0 0 2 By MS/MS By matching 5.75 0.433 1 3 3 1 51.231 51.364 5;6 1.2349E-27 15086 20211116_3433_TMUAki_TMT10x_P_F5 164.18 156.73 16291000 25107000 212630 30990000 27546000 32280000 18566000 18380000 15733000 14386000 18633000 15170000 23449000 1601300 31219000 26192000 32493000 19214000 19270000 16233000 14215000 17884000 5 5 3 5 5 5 5 5 5 5 5 16291000 25107000 212630 30990000 27546000 32280000 18566000 18380000 15733000 14386000 18633000 15170000 23449000 1601300 31219000 26192000 32493000 19214000 19270000 16233000 14215000 17884000 5 5 3 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4007500000 3628900000 378570000 10858 1368 10084 56848;56849;56850;56851 68952;68953;68954;68955;68956 68952 5 KYVFLDPLAGAVTK Unmodified 1520.8603 0.86026563 26 Q9NQA3;C4AMC7;Q6VEQ5;A8K0Z3;A8MWX3 WASH6P;WASH3P;WASH2P;WASH1;WASH4P WAS protein family homolog 6;Putative WAS protein family homolog 3;WAS protein family homolog 2;WAS protein family homolog 1;Putative WAS protein family homolog 4 yes no 0 0 0 1 By MS/MS 3 0 1 1 71.904 71.533 3 1.5442E-06 25933 20211116_3441_TMUAki_TMT10x_S_F3 115.5 95.074 2159900 3965200 77432 3728800 2609100 2521500 2598200 2189400 2266900 2402100 2499800 2011700 3699000 257530 3802700 2506100 2635700 2625800 2249100 2328900 2337300 2404200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2159900 3965200 77432 3728800 2609100 2521500 2598200 2189400 2266900 2402100 2499800 2011700 3699000 257530 3802700 2506100 2635700 2625800 2249100 2328900 2337300 2404200 1 1 1 1 1 1 1 1 1 1 1 238010000 0 238010000 10859 26 10085 56852 68957 68957 1 KYVIYIER Unmodified 1082.6124 0.61243078 1306 P61254;Q9UNX3 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 45.957 45.832 3 0.0008837 12266 20211116_3428_TMUAki_TMT10x_P_F1 103.55 61.211 2321500 3524000 0 4796700 2243800 1720100 1950100 2267800 2226700 2126300 2875400 2161400 3293000 173670 4757600 2142900 1954400 2002000 2273800 2276200 2082500 2753700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2321500 3524000 0 4796700 2243800 1720100 1950100 2267800 2226700 2126300 2875400 2161400 3293000 173670 4757600 2142900 1954400 2002000 2273800 2276200 2082500 2753700 1 1 0 1 1 1 1 1 1 1 1 381980000 0 381980000 10860 1306 10086 56853;56854;56855 68958;68959 68958 2 KYYINVCRPLNPVPGCNR Unmodified 2219.1092 0.10919665 630 P11717 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 0 0 0 2 By MS/MS 6 0 1 1 46.566 46.73 4 4.2439E-12 12458 20211116_3445_TMUAki_TMT10x_S_F6 134.85 108.99 1267700 2295100 37232 2280500 1284400 1149900 971520 1850500 1686000 1609600 1741200 1180700 2141500 140040 2310600 1225900 1256900 1023900 1838900 1685900 1581900 1678000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1267700 2295100 37232 2280500 1284400 1149900 971520 1850500 1686000 1609600 1741200 1180700 2141500 140040 2310600 1225900 1256900 1023900 1838900 1685900 1581900 1678000 1 1 1 1 1 1 1 1 1 1 1 199500000 0 199500000 10861 630 10087 56856 68960 68960 1 LAAAFAVSR Unmodified 904.51305 0.51305109 1237 P55084;P55084-2 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 0 0 0 0 By MS/MS 3 0 1 1 50.901 50.539 2 0.0038259 17353 20211116_3441_TMUAki_TMT10x_S_F3 77.732 51.317 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10862 1237 10088 56857 68961 68961 1 LAAAILGGVDQIHIKPGAK Unmodified 1871.0993 0.09926712 765 P22087 FBL rRNA 2'-O-methyltransferase fibrillarin yes yes 0 0 0 1 By MS/MS By MS/MS 2.83 1.07 1 1 2 2 4 2 69.624 69.439 4 4.5926E-59 22265 20211116_3431_TMUAki_TMT10x_P_F4 256.45 247.74 42280000 68785000 262570 77206000 49315000 64346000 46491000 46389000 45026000 46876000 53512000 39368000 64215000 3797400 77976000 47227000 65941000 47260000 48086000 46171000 45761000 51358000 7 7 5 7 7 7 7 7 7 7 7 22321000 34085000 58173 38558000 30103000 45175000 26488000 23658000 22461000 24269000 26316000 20783000 31822000 1962700 39119000 28773000 45129000 26932000 25158000 23164000 23677000 25267000 4 4 2 4 4 4 4 4 4 4 4 19959000 34700000 204400 38648000 19212000 19171000 20003000 22731000 22564000 22607000 27196000 18585000 32393000 1834800 38857000 18454000 20812000 20328000 22928000 23007000 22084000 26092000 3 3 3 3 3 3 3 3 3 3 3 19829000000 12190000000 7639100000 10863 765 10089 56858;56859;56860;56861;56862;56863 68962;68963;68964;68965;68966;68967;68968 68965 7 LAACVNLIPQITSIYEWK Unmodified 2118.1183 0.11834758 300 O60888;O60888-3;O60888-2 CUTA Protein CutA yes no 0 0 0 0 By MS/MS 4 0 1 1 80.99 80.998 3 1.8447E-08 27114 20211116_3431_TMUAki_TMT10x_P_F4 113.69 97.001 4174900 6513100 28660 6312900 3639700 6128800 4587800 2219200 2151600 2621700 3950600 3887000 6076700 311740 6451600 3512000 6167100 4528600 2465700 2359300 2543900 3755300 2 2 1 2 2 2 2 2 2 2 2 4174900 6513100 28660 6312900 3639700 6128800 4587800 2219200 2151600 2621700 3950600 3887000 6076700 311740 6451600 3512000 6167100 4528600 2465700 2359300 2543900 3755300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 384430000 384430000 0 10864 300 10090 56864 68969;68970 68969 2 LAADTVFVGTAGTVGRPK Unmodified 1758.9628 0.96283322 2118 Q86VY4 TSPYL5 Testis-specific Y-encoded-like protein 5 yes yes 0 0 0 1 By MS/MS 1 0 1 1 55.644 55.344 3 0.000171 18271 20211116_3439_TMUAki_TMT10x_S_F1 67.994 54.03 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10865 2118 10091 56865 68971 68971 1 LAADVGK Unmodified 672.38064 0.38063993 639;502;638 P05141;P12235;P12236 SLC25A5;SLC25A4;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS 4.4 1.02 1 2 1 1 2 3 37.612 37.703 2 0.012918 9084 20211116_3444_TMUAki_TMT10x_S_F5 91.906 48.84 4115600 6834400 62783 6361400 5170300 6547700 4485500 3315900 3806600 3412300 4815800 3832500 6375500 413450 6525900 4944000 6586300 4564600 3537400 3938100 3328700 4614400 4 4 3 4 4 4 4 4 4 4 4 3196700 5366800 57766 4909100 4270400 5848600 3540600 2612600 3068200 2713500 3724200 2976800 5006100 333900 5054500 4079800 5827500 3614900 2822600 3165300 2646000 3572300 2 2 2 2 2 2 2 2 2 2 2 918960 1467600 5016.9 1452300 899860 699140 944920 703310 738380 698840 1091600 855670 1369300 79548 1471400 864190 758790 949720 714730 772750 682710 1042100 2 2 1 2 2 2 2 2 2 2 2 196470000 117860000 78613000 10866 502;638;639 10092 56866;56867;56868;56869;56870 68972;68973;68974;68975;68976 68975 5 LAAFGQLHK Unmodified 983.55525 0.55525025 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 49.059 48.87 3 8.5766E-05 15117 20211116_3429_TMUAki_TMT10x_P_F2 133.33 92.302 3959100 6448800 26909 6570600 8589300 7544300 4363600 6610400 6894700 5152000 5728700 3686500 6017900 418160 6709100 8131200 7604600 4725500 6724400 6862000 5091800 5562400 2 2 2 2 2 2 2 2 2 2 2 2215000 3458000 2283.2 3500100 6823600 6007500 3005500 3841000 4039300 3005100 3200700 2062400 3226900 250310 3605200 6446900 5916700 3280300 3989600 4034300 2969400 3113500 1 1 1 1 1 1 1 1 1 1 1 1744100 2990800 24626 3070500 1765600 1536800 1358100 2769400 2855400 2146900 2528000 1624100 2791000 167850 3103900 1684200 1687900 1445200 2734900 2827700 2122400 2448800 1 1 1 1 1 1 1 1 1 1 1 626850000 434710000 192140000 10867 1576 10093 56871;56872 68977;68978 68977 2 LAAIAESGVER Unmodified 1114.5982 0.59823728 837 P28072 PSMB6 Proteasome subunit beta type-6 yes yes 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 47.949 47.6 2 3.3972E-07 13595 20211116_3442_TMUAki_TMT10x_S_F4 114.39 85.085 1932200 3429800 0 3661300 1835500 1976000 1489700 4167700 4679500 3581500 3219400 1799000 3201200 151620 3693600 1750800 2166200 1627900 4109300 4569200 3522000 3150800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1932200 3429800 0 3661300 1835500 1976000 1489700 4167700 4679500 3581500 3219400 1799000 3201200 151620 3693600 1750800 2166200 1627900 4109300 4569200 3522000 3150800 1 1 0 1 1 1 1 1 1 1 1 72153000 0 72153000 10868 837 10094 56873;56874 68979;68980 68980 2 LAAIIPDPVVAPSIVPVLK Unmodified 1911.1809 0.18087148 1583 Q12996 CSTF3 Cleavage stimulation factor subunit 3 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 80.889 80.851 3 2.1253E-08 29579 20211116_3441_TMUAki_TMT10x_S_F3 105.39 93.007 5393100 8405000 11976 8698000 6249000 6176400 7010800 4056600 3858000 4627700 6081200 5021300 7843900 430170 8815000 6009100 6400000 6973900 4248600 4141700 4496100 5797500 3 3 1 3 3 3 3 3 3 3 3 2163500 3046700 0 2970300 1881900 2876000 2396400 1589000 1381100 1824400 2216600 2014100 2842600 137110 3034200 1814900 2906800 2372400 1687600 1479100 1772100 2112400 1 1 0 1 1 1 1 1 1 1 1 3229600 5358300 11976 5727700 4367100 3300400 4614400 2467600 2476800 2803300 3864600 3007200 5001200 293060 5780800 4194200 3493300 4601500 2561000 2662500 2724000 3685100 2 2 1 2 2 2 2 2 2 2 2 822700000 318920000 503790000 10869 1583 10095 56875;56876;56877 68981;68982;68983 68983 3 LAAIVAK Unmodified 684.45341 0.45341094 983 P40429 RPL13A 60S ribosomal protein L13a yes yes 0 0 0 0 By MS/MS By MS/MS 6.2 2.64 1 2 2 3 2 50.867 51.097 2 0.0022568 14534 20211116_3436_TMUAki_TMT10x_P_F8 128 42.941 24287000 40253000 346180 41385000 30978000 35463000 27273000 28931000 27997000 27275000 32346000 22616000 37565000 2401300 42051000 29629000 36346000 27880000 29696000 28605000 26706000 31068000 5 5 3 5 5 5 5 5 5 5 5 12167000 20147000 311830 19839000 18971000 24564000 16158000 13325000 13444000 12894000 15658000 11331000 18798000 1394700 20331000 18139000 24480000 16452000 14102000 13874000 12611000 15036000 2 2 2 2 2 2 2 2 2 2 2 12119000 20106000 34354 21546000 12007000 10899000 11115000 15607000 14553000 14381000 16688000 11284000 18766000 1006700 21719000 11491000 11865000 11428000 15594000 14731000 14096000 16032000 3 3 1 3 3 3 3 3 3 3 3 1553000000 1140100000 412890000 10870 983 10096 56878;56879;56880;56881;56882 68984;68985;68986;68987;68988 68985 5 LAALADQWQFLVQK Unmodified 1629.8879 0.88787736 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 80.428 80.401 3 7.6342E-05 28413 20211116_3430_TMUAki_TMT10x_P_F3 91.62 71.781 12274000 18994000 31084 19594000 12367000 16224000 14887000 8658900 7325900 9865700 13579000 11428000 17725000 991810 19896000 11919000 16566000 14734000 9221700 8005600 9585700 12906000 3 3 1 3 3 3 3 3 3 3 3 8195200 12150000 31084 12629000 7296000 12462000 9660000 5526700 4911100 6723900 8815900 7630500 11339000 658180 12847000 7054600 12550000 9527900 6005000 5342600 6517600 8383500 2 2 1 2 2 2 2 2 2 2 2 4078700 6843800 0 6964800 5070800 3761600 5226700 3132300 2414800 3141800 4763600 3797600 6386400 333630 7048800 4864800 4015500 5206400 3216700 2663100 3068100 4522600 1 1 0 1 1 1 1 1 1 1 1 2261600000 1145200000 1116300000 10871 1663 10097 56883;56884;56885;56886 68989;68990;68991 68989 3 LAALEEQR Unmodified 928.49779 0.49779495 100 O00541;O00541-2 PES1 Pescadillo homolog yes no 0 0 0 0 By MS/MS 3 0 1 1 40.104 40.158 2 0.018527 11985 20211116_3430_TMUAki_TMT10x_P_F3 69.198 16.795 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10872 100 10098 56887 68992 68992 1 LAALNPESNTAGLDIFAK Unmodified 1843.968 0.96797818 80 O00299 CLIC1 Chloride intracellular channel protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 7.08 0.828 4 4 5 7 6 74.474 74.488 2;3 3.3508E-31 27124 20211116_3435_TMUAki_TMT10x_P_F7 192.86 150.86 68259000 108630000 823240 108110000 73142000 94693000 81323000 61083000 62362000 66288000 80718000 63555000 101360000 4875300 110130000 70327000 96539000 81475000 63957000 64924000 64526000 77298000 12 12 5 12 12 12 12 12 12 12 12 32869000 55639000 254770 51405000 33564000 56650000 37309000 29434000 29322000 31521000 37256000 30602000 51901000 2456000 52819000 32259000 56776000 37401000 31362000 30461000 30699000 35694000 6 6 4 6 6 6 6 6 6 6 6 35390000 52993000 568470 56704000 39578000 38043000 44014000 31649000 33040000 34767000 43462000 32953000 49462000 2419300 57306000 38068000 39763000 44073000 32595000 34463000 33827000 41603000 6 6 1 6 6 6 6 6 6 6 6 20229000000 8761600000 11467000000 10873 80 10099 56888;56889;56890;56891;56892;56893;56894;56895;56896;56897;56898;56899;56900 68993;68994;68995;68996;68997;68998;68999;69000;69001;69002;69003;69004 68995 12 LAALPENPPAIDWAYYK Unmodified 1930.9829 0.98289996 372 O75947;O75947-2 ATP5H ATP synthase subunit d, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 3 3 4 2 78.479 78.495 2;3 3.4629E-21 25194 20211116_3447_TMUAki_TMT10x_S_F8 165.7 129.96 11792000 18751000 169420 18004000 12922000 13847000 14549000 7675600 6755800 9137000 13281000 10980000 17494000 1127900 18357000 12440000 14224000 14431000 8159300 7445400 8863500 12610000 3 3 2 3 3 3 3 3 3 3 3 5554000 8917300 159670 8356800 5120600 8158900 6668400 3809500 3335800 4738100 5907800 5172500 8318700 603200 8562000 4958500 8226200 6580000 4120500 3630700 4589200 5619400 1 1 1 1 1 1 1 1 1 1 1 6237600 9833600 9751 9646700 7801500 5687700 7880700 3866200 3420000 4398900 7373500 5807700 9175100 524700 9795200 7481500 5997500 7851500 4038700 3814700 4274300 6990600 2 2 1 2 2 2 2 2 2 2 2 4127800000 2710600000 1417200000 10874 372 10100 56901;56902;56903;56904;56905;56906 69005;69006;69007;69008 69008 4 LAALPNVYEVISK Unmodified 1415.8024 0.8024164 912 P33992 MCM5 DNA replication licensing factor MCM5 yes yes 0 0 0 0 By MS/MS By MS/MS 4.25 3.09 4 5 2 5 8 8 63.84 63.796 2;3 1.025E-22 25043 20211116_3447_TMUAki_TMT10x_S_F8 211.46 188.82 52754000 88190000 377840 82300000 59598000 76680000 64415000 49341000 49560000 53766000 62148000 49119000 82268000 4531900 84291000 57270000 77848000 64627000 51679000 51515000 52328000 59562000 12 12 5 12 12 12 12 12 12 12 12 27101000 44495000 143670 41128000 27342000 49455000 34314000 26761000 27046000 29589000 31610000 25234000 41506000 2266000 42319000 26393000 49358000 34216000 28439000 27994000 28782000 30351000 6 6 3 6 6 6 6 6 6 6 6 25653000 43694000 234170 41172000 32256000 27225000 30102000 22580000 22514000 24177000 30538000 23886000 40762000 2265900 41972000 30877000 28491000 30411000 23240000 23521000 23547000 29211000 6 6 2 6 6 6 6 6 6 6 6 10187000000 5496100000 4690600000 10875 912 10101 56907;56908;56909;56910;56911;56912;56913;56914;56915;56916;56917;56918;56919;56920;56921;56922 69009;69010;69011;69012;69013;69014;69015;69016;69017;69018;69019;69020;69021;69022;69023 69022 15 LAALQGR Unmodified 727.43407 0.43407249 1536 Q07065;Q96K21;Q96K21-3;Q96K21-4;Q96K21-2 CKAP4;ZFYVE19 Cytoskeleton-associated protein 4;Abscission/NoCut checkpoint regulator yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 35.894 36.322 2 0.062095 8507 20211116_3436_TMUAki_TMT10x_P_F8 62.978 8.2138 1393000 2110500 6013.8 2213800 2305600 2275700 1641300 1498400 1745700 1521500 1807700 1297000 1969700 122010 2252100 2193600 2297100 1702800 1563400 1773600 1485000 1741900 3 3 1 3 3 3 3 3 3 3 3 967770 1415000 0 1519400 1861100 1866500 1141400 1018100 1182700 1049500 1250800 901000 1320700 80881 1547900 1765700 1861000 1196700 1078900 1203800 1023700 1204500 2 2 0 2 2 2 2 2 2 2 2 425270 695530 6013.8 694340 444470 409260 499880 480330 562930 472040 556890 396020 649000 41132 704160 427930 436110 506100 484530 569710 461360 537400 1 1 1 1 1 1 1 1 1 1 1 64251000 37463000 26788000 10876 1536 10102 56923;56924;56925 69024;69025 69024 2 LAALSASLAR Unmodified 971.57638 0.57637963 100 O00541;O00541-2 PES1 Pescadillo homolog yes no 0 0 0 0 By MS/MS 3 0 1 1 55.855 55.468 2 0.092524 19360 20211116_3441_TMUAki_TMT10x_S_F3 56.378 36.891 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10877 100 10103 56926 69026 69026 1 LAALTAGDRVPWAR Unmodified 1495.8259 0.82594581 1135 P50416;P50416-2 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 58.665 58.511 3 6.6654E-19 18322 20211116_3442_TMUAki_TMT10x_S_F4 164.98 122.26 23889000 38348000 91817 40173000 31460000 32946000 25791000 21333000 18950000 21051000 28776000 22242000 35789000 1931000 40746000 30013000 33748000 26246000 22267000 19926000 20571000 27455000 5 5 2 5 5 5 5 5 5 5 5 13682000 21388000 0 22242000 19936000 24932000 16887000 12494000 11409000 12455000 16494000 12737000 19960000 980740 22670000 19024000 24954000 17119000 13330000 12027000 12166000 15754000 3 3 0 3 3 3 3 3 3 3 3 10207000 16960000 91817 17931000 11524000 8013800 8904200 8838500 7540400 8596000 12282000 9504200 15829000 950220 18076000 10989000 8794200 9126700 8937500 7899000 8405300 11701000 2 2 2 2 2 2 2 2 2 2 2 2256500000 1296000000 960500000 10878 1135 10104 56927;56928;56929;56930 69027;69028;69029;69030;69031 69031 5 LAAQENRPVTDHLDEQAVQGLK Unmodified 2431.2456 0.24555002 2669 Q9BTW9;Q9BTW9-4;Q9BTW9-5;Q9BTW9-3 TBCD Tubulin-specific chaperone D yes no 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 46.807 46.968 4 5.6846E-14 13370 20211116_3433_TMUAki_TMT10x_P_F5 125.88 109.94 4378500 7111300 10109 9153700 9539300 9384500 5514700 7842500 8139600 6405300 7300800 4076800 6643200 317000 9197500 9046200 9511400 5885500 8008500 8136000 6315000 7068700 2 2 1 2 2 2 2 2 2 2 2 2857100 4365700 10109 5636800 7905000 8065300 4494500 5021200 4955700 4011200 4609300 2660300 4078400 317000 5697000 7494600 7998200 4751500 5228600 5009100 3959100 4457100 1 1 1 1 1 1 1 1 1 1 1 1521300 2745600 0 3516800 1634300 1319200 1020200 2821300 3183800 2394100 2691500 1416500 2564800 0 3500400 1551600 1513200 1133900 2779900 3126800 2355800 2611600 1 1 0 1 1 1 1 1 1 1 1 1359900000 802960000 556990000 10879 2669 10105 56931;56932 69032;69033 69032 2 LAAQFIPK Unmodified 886.52764 0.52763852 2744 Q9BZZ5-2;Q9BZZ5;Q9BZZ5-3;Q9BZZ5-6 API5 Apoptosis inhibitor 5 yes no 0 0 0 0 By MS/MS 2 0 1 1 58.335 58.078 2 0.0019081 18887 20211116_3429_TMUAki_TMT10x_P_F2 135.35 90.903 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10880 2744 10106 56933 69034 69034 1 LAAQSCALSLVR Unmodified 1287.6969 0.69690547 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 54.535 54.387 2 1.0423E-17 16084 20211116_3440_TMUAki_TMT10x_S_F2 218.07 178.43 10170000 18388000 51035 16941000 19960000 23990000 12034000 30194000 26364000 18286000 19656000 9468700 17153000 960100 17490000 18938000 24144000 13065000 30029000 25956000 18349000 19169000 4 4 2 4 4 4 4 4 4 4 4 5704900 10217000 51035 9584200 12594000 20054000 8876100 18079000 15902000 10663000 11014000 5312200 9530700 617030 9978700 11985000 19740000 9415300 18260000 15696000 10720000 10776000 2 2 2 2 2 2 2 2 2 2 2 4464700 8171900 0 7357000 7366100 3936000 3157800 12114000 10462000 7622400 8641600 4156500 7622200 343070 7511700 6952800 4404500 3649200 11770000 10259000 7629500 8392600 2 2 0 2 2 2 2 2 2 2 2 1823000000 1325700000 497340000 10881 1546 10107 56934;56935;56936;56937 69035;69036;69037;69038;69039 69038 5 LAASGEGGLQELSGHFENQK Unmodified 2070.997 0.99704647 1858 Q16643;Q16643-3;Q16643-2 DBN1 Drebrin yes no 0 0 0 0 By MS/MS By MS/MS 4.82 0.936 1 3 4 3 7 4 56.348 56.465 3;4 2.0952E-71 17513 20211116_3442_TMUAki_TMT10x_S_F4 278.19 267.09 66994000 115750000 352970 127900000 86648000 108690000 67901000 60837000 61236000 63813000 81192000 62376000 108050000 5474900 129330000 82588000 110830000 69649000 64359000 63297000 62200000 77705000 15 15 9 15 15 15 15 15 15 15 15 36364000 61722000 310200 66112000 58416000 83530000 45886000 33902000 34186000 34709000 42399000 33857000 57609000 3130300 67395000 55684000 82905000 46837000 36998000 35582000 33866000 40646000 9 9 6 9 9 9 9 9 9 9 9 30630000 54028000 42764 61784000 28232000 25158000 22015000 26935000 27050000 29104000 38794000 28519000 50442000 2344600 61934000 26904000 27928000 22812000 27361000 27715000 28335000 37059000 6 6 3 6 6 6 6 6 6 6 6 10344000000 6121400000 4222400000 10882 1858 10108 56938;56939;56940;56941;56942;56943;56944;56945;56946;56947;56948 69040;69041;69042;69043;69044;69045;69046;69047;69048;69049;69050;69051;69052;69053;69054;69055 69051 16 LAASIAPEIYGHEDVKK Unmodified 1839.9731 0.97306355 913 P33993;P33993-3 MCM7 DNA replication licensing factor MCM7 yes no 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 52.465 52.616 4 1.778E-15 14908 20211116_3445_TMUAki_TMT10x_S_F6 148.03 125.59 30373000 51499000 489430 66363000 56879000 54774000 33110000 44266000 44959000 38890000 45103000 28284000 48109000 1998400 66478000 53971000 56279000 35194000 45376000 45224000 38203000 43505000 4 4 3 4 4 4 4 4 4 4 4 16387000 29101000 224180 36749000 47388000 44520000 22941000 26347000 24969000 21102000 25318000 15260000 27183000 654620 37066000 44837000 44466000 24611000 27548000 25325000 20825000 24413000 2 2 1 2 2 2 2 2 2 2 2 13986000 22398000 265250 29614000 9491400 10255000 10169000 17919000 19990000 17788000 19785000 13025000 20926000 1343800 29412000 9133900 11813000 10583000 17828000 19900000 17378000 19092000 2 2 2 2 2 2 2 2 2 2 2 3988700000 1747700000 2241000000 10883 913 10109 56949;56950;56951;56952 69056;69057;69058;69059 69059 4 LAATNALLNSLEFTK Unmodified 1604.8774 0.87737225 1739 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 0 By MS/MS By MS/MS 2.89 1.98 7 10 14 4 14 21 62.089 62.019 2;3 3.3302E-81 27312 20211116_3429_TMUAki_TMT10x_P_F2 305.6 235.93 174160000 279800000 583500 258900000 202560000 243210000 211360000 165000000 161830000 178150000 214540000 162160000 261010000 14197000 265360000 194410000 246980000 212400000 172100000 168670000 173440000 205330000 36 36 19 36 36 36 36 35 36 36 36 79167000 121530000 165630 112750000 72596000 136200000 89060000 74319000 74000000 82742000 93217000 73711000 113370000 6304000 115990000 70012000 135910000 89011000 78937000 76623000 80463000 89328000 8 8 3 8 8 8 8 7 8 8 8 94994000 158270000 417880 146150000 129970000 107020000 122300000 90678000 87825000 95404000 121330000 88445000 147640000 7893500 149370000 124390000 111070000 123380000 93162000 92044000 92981000 116000000 28 28 16 28 28 28 28 28 28 28 28 34471000000 13713000000 20758000000 10884 1739 10110 56953;56954;56955;56956;56957;56958;56959;56960;56961;56962;56963;56964;56965;56966;56967;56968;56969;56970;56971;56972;56973;56974;56975;56976;56977;56978;56979;56980;56981;56982;56983;56984;56985;56986;56987 69060;69061;69062;69063;69064;69065;69066;69067;69068;69069;69070;69071;69072;69073;69074;69075;69076;69077;69078;69079;69080;69081;69082;69083;69084;69085;69086;69087;69088;69089;69090;69091;69092;69093;69094;69095;69096;69097;69098;69099;69100;69101;69102 69067 43 LAAVDATVNQVLASR Unmodified 1526.8417 0.84165545 1769 Q15084;Q15084-5;Q15084-3;Q15084-4;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 0 By MS/MS By MS/MS 5.73 2.93 3 4 4 5 6 75.883 75.902 2;3 1.4256E-61 24706 20211116_3436_TMUAki_TMT10x_P_F8 314.07 271.33 41525000 68661000 88918 65684000 47122000 64366000 47581000 43132000 41089000 44110000 51482000 38662000 64057000 3213800 67199000 45174000 65176000 48038000 44954000 42454000 43040000 49341000 14 14 4 14 14 14 14 14 14 14 14 23763000 38372000 20832 36879000 24991000 44250000 26668000 23626000 22636000 24850000 28968000 22124000 35800000 1748800 37838000 23989000 44161000 26838000 25099000 23430000 24220000 27748000 6 6 1 6 6 6 6 6 6 6 6 17762000 30289000 68086 28805000 22131000 20116000 20913000 19505000 18453000 19259000 22514000 16537000 28257000 1465000 29361000 21185000 21015000 21200000 19855000 19025000 18820000 21593000 8 8 3 8 8 8 8 8 8 8 8 14550000000 6376300000 8173700000 10885 1769 10111 56988;56989;56990;56991;56992;56993;56994;56995;56996;56997;56998 69103;69104;69105;69106;69107;69108;69109;69110;69111;69112;69113;69114;69115;69116 69107 14 LAAVQLLQFLAPK Unmodified 1410.8599 0.8598717 3006 Q9NXF1;Q9NXF1-2 TEX10 Testis-expressed sequence 10 protein yes no 0 0 0 0 By MS/MS 7 0 1 1 81.689 81.702 3 1.1075E-05 28510 20211116_3435_TMUAki_TMT10x_P_F7 88.187 70.455 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10886 3006 10112 56999 69117 69117 1 LACDVDQVTR Unmodified 1175.5605 0.56047157 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 38.993 39.036 2 4.6106E-09 11435 20211116_3430_TMUAki_TMT10x_P_F3 178.55 134.69 203900 293330 0 342650 470990 385700 243110 182500 182740 169490 251300 189820 273890 15715 346720 445560 385710 256640 195420 190990 166070 240300 1 1 0 1 1 1 1 1 1 1 1 203900 293330 0 342650 470990 385700 243110 182500 182740 169490 251300 189820 273890 15715 346720 445560 385710 256640 195420 190990 166070 240300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13824000 13824000 0 10887 1433 10113 57000;57001 69118;69119 69118 2 LACGVIGIAQ Unmodified 1000.5376 0.53755128 468 P00441 SOD1 Superoxide dismutase [Cu-Zn] yes yes 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 67.002 67.169 2 5.197E-05 22297 20211116_3435_TMUAki_TMT10x_P_F7 132.22 112.43 30970000 49046000 397690 53123000 41010000 45004000 34791000 32208000 30569000 32060000 37500000 28839000 45781000 3078900 53785000 39190000 46061000 35485000 33388000 31529000 31317000 35960000 7 7 7 7 7 7 7 7 7 7 7 16911000 26860000 246010 28531000 22857000 33357000 21601000 18852000 18009000 17516000 20822000 15748000 25069000 1714600 29060000 21900000 33359000 21866000 19859000 18578000 17162000 19999000 4 4 4 4 4 4 4 4 4 4 4 14059000 22186000 151680 24592000 18153000 11647000 13190000 13356000 12560000 14544000 16678000 13092000 20711000 1364300 24724000 17290000 12702000 13619000 13529000 12951000 14155000 15961000 3 3 3 3 3 3 3 3 3 3 3 6945800000 3238900000 3706900000 10888 468 10114 57002;57003;57004;57005;57006;57007 69120;69121;69122;69123;69124;69125;69126 69123 7 LADDVDLEQVANETHGHVGADLAALCSEAALQAIR Unmodified 3671.785 0.78495179 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 By MS/MS By MS/MS 2.76 1.11 3 5 9 2 2 8 13 63.405 63.34 4;5 2.7437E-104 25358 20211116_3428_TMUAki_TMT10x_P_F1 268.87 258.72 78928000 122190000 1309800 123180000 84642000 77126000 107750000 43393000 43340000 49587000 86212000 73495000 114020000 6814100 124910000 81784000 80653000 106100000 46007000 48431000 48174000 81838000 34 35 24 35 35 35 35 35 35 35 35 21709000 35605000 402500 34224000 21316000 37174000 28233000 17187000 18219000 19692000 26672000 20215000 33219000 1835400 35055000 20626000 37239000 27966000 18558000 19273000 19129000 25468000 11 11 7 11 11 11 11 11 11 11 11 57219000 86581000 907290 88957000 63326000 39951000 79519000 26206000 25121000 29895000 59540000 53280000 80798000 4978700 89850000 61158000 43414000 78129000 27449000 29158000 29045000 56370000 23 24 17 24 24 24 24 24 24 24 24 49595000000 27494000000 22101000000 10889 1235 10115 57008;57009;57010;57011;57012;57013;57014;57015;57016;57017;57018;57019;57020;57021;57022;57023;57024;57025;57026;57027;57028 69127;69128;69129;69130;69131;69132;69133;69134;69135;69136;69137;69138;69139;69140;69141;69142;69143;69144;69145;69146;69147;69148;69149;69150;69151;69152;69153;69154;69155;69156;69157;69158;69159;69160;69161 69127 35 LADDVDLEQVANETHGHVGADLAALCSEAALQAIRK Unmodified 3799.8799 0.87991481 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 1 By MS/MS By MS/MS 5.33 1.49 1 1 1 1 2 5 1 76.926 76.944 5 3.1635E-24 27002 20211116_3446_TMUAki_TMT10x_S_F7 137.5 126.6 25468000 41524000 127110 35317000 28313000 39282000 26694000 20944000 21795000 24885000 29947000 23711000 38723000 1911100 36527000 27091000 39361000 27010000 22338000 22676000 24142000 28636000 4 4 2 4 4 4 4 4 4 4 4 19638000 30747000 3486.1 25180000 19144000 33450000 19693000 16048000 16713000 19492000 22930000 18282000 28669000 1265800 26204000 18347000 33175000 19854000 17298000 17353000 18895000 21928000 3 3 1 3 3 3 3 3 3 3 3 5830300 10777000 123620 10137000 9169000 5832000 7001400 4895700 5082300 5392700 7016100 5429500 10054000 645350 10322000 8744700 6185800 7155800 5039800 5323000 5246300 6708300 1 1 1 1 1 1 1 1 1 1 1 14834000000 12992000000 1842100000 10890 1235 10116 57029;57030;57031;57032;57033;57034 69162;69163;69164;69165 69165 4 LADFGALHR Unmodified 998.52976 0.52976379 2705 Q9BW92;Q9BW92-2 TARS2 Threonine--tRNA ligase, mitochondrial yes no 0 0 0 0 By MS/MS 7 0 2 2 43.999 44.528 3 1.0547E-05 13643 20211116_3446_TMUAki_TMT10x_S_F7 107.15 70.759 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10891 2705 10117 57035;57036 69166;69167 69167 2 LADFGLAR Unmodified 861.47085 0.47085192 517;1469;797;1470;632;1143 P06493;Q9NYV4;Q00537-2;Q96Q40-5;O94921-3;Q96Q40-4;Q96Q40-6;Q96Q40-3;Q96Q40;Q14004;Q9NYV4-3;Q9NYV4-2;Q14004-2;O94921;Q00537;O94921-2;Q00535;Q00535-2;Q00534;P24941;P24941-2;Q00526;P11802;P11802-2;P50750;P50750-2 CDK1;CDK12;CDK17;CDK15;CDK14;CDK13;CDK5;CDK6;CDK2;CDK3;CDK4;CDK9 Cyclin-dependent kinase 1;Cyclin-dependent kinase 12;Cyclin-dependent kinase 17;Cyclin-dependent kinase 15;Cyclin-dependent kinase 14;Cyclin-dependent kinase 13;Cyclin-dependent-like kinase 5;Cyclin-dependent kinase 6;Cyclin-dependent kinase 2;Cyclin-dependent kinase 3;Cyclin-dependent kinase 4;Cyclin-dependent kinase 9 no no 0 0 0 0 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 55.567 55.873 2 0.0033301 18224 20211116_3446_TMUAki_TMT10x_S_F7 101.33 0 13560000 21628000 0 23203000 19359000 19721000 13840000 16343000 16515000 14230000 18146000 12623000 20187000 902700 23507000 18404000 20229000 14410000 16724000 16742000 13984000 17454000 2 2 0 2 2 2 2 2 2 2 2 5950400 9312700 0 9892700 12083000 12940000 7412400 6293200 6817200 5614000 7657600 5539000 8692000 406670 10097000 11458000 12845000 7744500 6713600 6991200 5510900 7361000 1 1 0 1 1 1 1 1 1 1 1 7609800 12315000 0 13310000 7275700 6780800 6427400 10050000 9698000 8615500 10488000 7084400 11495000 496030 13411000 6946500 7384100 6665200 10010000 9750900 8473400 10093000 1 1 0 1 1 1 1 1 1 1 1 1519900000 596140000 923800000 10892 517;1470;1469;797;632;1143 10118 57037;57038;57039;57040;57041 69168;69169;69170;69171;69172 69172 5 LADFGVAGQLTDTQIK Unmodified 1675.8781 0.87810054 3348 Q9Y6E0;Q9Y6E0-2;Q9P289;Q9P289-2;O00506;O00506-3;O00506-2;Q9P289-3 STK24;STK26;STK25 Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit;Serine/threonine-protein kinase 26;Serine/threonine-protein kinase 25 yes no 0 0 0 0 By MS/MS 6 0.816 1 1 1 3 73.054 73.166 3 1.4793E-12 22983 20211116_3434_TMUAki_TMT10x_P_F6 140.84 120.41 11224000 17498000 195290 17173000 11036000 18370000 12472000 8492800 9258800 9904800 12557000 10452000 16326000 1109900 17560000 10629000 18419000 12476000 9175700 9676900 9615400 12011000 3 3 3 3 3 3 3 3 3 3 3 11224000 17498000 195290 17173000 11036000 18370000 12472000 8492800 9258800 9904800 12557000 10452000 16326000 1109900 17560000 10629000 18419000 12476000 9175700 9676900 9615400 12011000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1188900000 1188900000 0 10893 3348 10119 57042;57043;57044 69173;69174;69175;69176 69174 4 LADFGVAGQLTDTQIKR Unmodified 1831.9792 0.97921156 3348 Q9Y6E0;Q9Y6E0-2;Q9P289;Q9P289-2;O00506;O00506-3;O00506-2;Q9P289-3 STK24;STK26;STK25 Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit;Serine/threonine-protein kinase 26;Serine/threonine-protein kinase 25 yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 61.756 62.115 3 1.3099E-07 18512 20211116_3447_TMUAki_TMT10x_S_F8 110.04 96.138 2874800 5366200 51473 4426700 4021200 4364800 3446500 5963400 5198400 5280100 4825600 2677100 5003800 302370 4581400 3844400 4486300 3580300 5962100 5198600 5185000 4666700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2874800 5366200 51473 4426700 4021200 4364800 3446500 5963400 5198400 5280100 4825600 2677100 5003800 302370 4581400 3844400 4486300 3580300 5962100 5198600 5185000 4666700 1 1 1 1 1 1 1 1 1 1 1 729840000 315770000 414060000 10894 3348 10120 57045;57046;57047 69177;69178 69178 2 LADFGVLHR Unmodified 1026.5611 0.56106391 819 P26639;P26639-2 TARS Threonine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 49.432 49.656 3 2.2695E-06 15197 20211116_3435_TMUAki_TMT10x_P_F7 161.79 117.44 3693300 6122700 95526 6542600 5019600 6033400 4263900 4889400 5112500 4555100 5393400 3439600 5714700 413800 6637200 4799800 6152100 4390900 5018900 5173900 4462500 5194100 5 5 5 5 5 5 5 5 5 5 5 1465000 2292700 32944 2436200 3282100 3687600 2041900 1840500 2013600 1691700 2052000 1364300 2139800 177610 2493900 3117900 3637900 2135200 1960000 2051100 1658300 1978300 2 2 2 2 2 2 2 2 2 2 2 2228400 3830000 62582 4106400 1737400 2345900 2222000 3049000 3098900 2863400 3341400 2075300 3574800 236200 4143300 1681900 2514200 2255700 3058900 3122800 2804200 3215800 3 3 3 3 3 3 3 3 3 3 3 1829000000 1070100000 758870000 10895 819 10121 57048;57049;57050;57051;57052;57053 69179;69180;69181;69182;69183 69179 5 LADFGVLHRNELSGALTGLTR Unmodified 2239.2073 0.20731402 819 P26639;P26639-2 TARS Threonine--tRNA ligase, cytoplasmic yes no 0 0 0 1 By MS/MS 2 0.816 1 1 1 3 67.007 66.707 4 5.2571E-35 21085 20211116_3440_TMUAki_TMT10x_S_F2 191.73 168.59 3060000 5061000 92557 5040400 4364300 3171000 3378200 3865900 3520100 3761400 4305600 2849900 4722400 358220 5115600 4165500 3361400 3482600 3892400 3602800 3677900 4129200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3060000 5061000 92557 5040400 4364300 3171000 3378200 3865900 3520100 3761400 4305600 2849900 4722400 358220 5115600 4165500 3361400 3482600 3892400 3602800 3677900 4129200 2 2 2 2 2 2 2 2 2 2 2 1424800000 0 1424800000 10896 819 10122 57054;57055;57056 69184;69185 69184 2 LADFHANCR Unmodified 1102.4978 0.49781173 89 O00451;O00451-3;O00451-2 GFRA2 GDNF family receptor alpha-2 yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 32.101 32.185 3 0.00014919 7944 20211116_3433_TMUAki_TMT10x_P_F5 88.136 83.78 1349700 2143300 14764 2201300 2307700 2146000 1692200 1117400 1136900 1173300 1612200 1256800 2000100 136360 2240800 2198000 2166500 1731500 1189700 1197800 1143600 1540600 3 3 2 3 3 3 3 3 3 3 3 971710 1538000 8308.2 1655800 1890800 1810200 1183700 861080 869140 873560 1200900 904820 1435600 101180 1683100 1795800 1813200 1227900 923760 909740 852650 1148200 1 1 1 1 1 1 1 1 1 1 1 377980 605270 6455.6 545530 416850 335810 508530 256360 267740 299770 411330 351960 564560 35183 557620 402210 353250 503580 265960 288010 290980 392350 2 2 1 2 2 2 2 2 2 2 2 52662000 45972000 6690000 10897 89 10123 57057;57058;57059 69186;69187;69188;69189 69187 4 LADHFGGK Unmodified 843.4239 0.42390173 2486;2898 Q9Y383;Q96HJ9-2;Q9Y383-3;Q9Y383-2;Q9NQ29;Q9NQ29-2;Q9NQ29-3 LUC7L2;LUC7L Putative RNA-binding protein Luc7-like 2;Putative RNA-binding protein Luc7-like 1 no no 0 0 0 0 By MS/MS 5 0 1 1 35.542 35.717 3 0.010005 7798 20211116_3444_TMUAki_TMT10x_S_F5 65.305 51.399 496770 860690 1275.1 863740 431030 442970 593570 517150 557000 508290 649910 462550 803130 41453 874650 417450 478890 592450 521790 571550 496790 624070 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 496770 860690 1275.1 863740 431030 442970 593570 517150 557000 508290 649910 462550 803130 41453 874650 417450 478890 592450 521790 571550 496790 624070 1 1 1 1 1 1 1 1 1 1 1 32391000 0 32391000 10898 2486;2898 10124 57060 69190 69190 1 LADIQIEQLNR Unmodified 1311.7147 0.71466402 301 O60925 PFDN1 Prefoldin subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 58.79 58.784 2 4.31E-07 17128 20211116_3444_TMUAki_TMT10x_S_F5 111.27 70.278 13022000 22482000 189740 23583000 20053000 25075000 15859000 17193000 16566000 15285000 18349000 12126000 20983000 1342800 24003000 19133000 25275000 16327000 17821000 16885000 15006000 17646000 4 4 2 4 4 4 4 4 4 4 4 9723300 16670000 114490 17505000 16656000 21911000 13064000 12822000 12096000 11443000 13722000 9054100 15558000 997870 17864000 15886000 21846000 13409000 13454000 12406000 11233000 13187000 3 3 1 3 3 3 3 3 3 3 3 3298400 5812600 75254 6078200 3397100 3163300 2794500 4370900 4469600 3841400 4627400 3071700 5424800 344980 6138400 3246700 3429500 2917900 4367200 4479300 3773500 4459000 1 1 1 1 1 1 1 1 1 1 1 1537000000 1089100000 447960000 10899 301 10125 57061;57062;57063;57064;57065 69191;69192;69193;69194 69194 4 LADLVERDR Unmodified 1085.5829 0.58292157 385 O94788;O94788-4;O94788-2;O94788-3 ALDH1A2 Retinal dehydrogenase 2 yes no 0 0 0 1 By MS/MS 3 0 1 1 42.288 41.972 3 0.0021172 13842 20211116_3441_TMUAki_TMT10x_S_F3 75.197 50.303 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10900 385 10126 57066 69195 69195 1 LADMGIAIR Unmodified 958.52699 0.52698659 3285 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog yes yes 0 0 0 0 By MS/MS 7 0 1 1 57.624 58.146 2 0.0010917 19141 20211116_3446_TMUAki_TMT10x_S_F7 85.38 35.355 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10901 3285 10127 57067 69196 69196 1 LADTHFVQR Unmodified 1085.5618 0.56179219 2674 Q9BUI4 POLR3C DNA-directed RNA polymerase III subunit RPC3 yes yes 0 0 0 0 By MS/MS 5 0 1 1 33.43 33.608 3 0.00041262 6921 20211116_3444_TMUAki_TMT10x_S_F5 102.62 79.792 200870 340210 3169.8 351640 215360 168580 204260 209370 217210 206310 247570 187060 317490 19811 355180 206410 183950 208170 210720 221490 201620 237880 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 200870 340210 3169.8 351640 215360 168580 204260 209370 217210 206310 247570 187060 317490 19811 355180 206410 183950 208170 210720 221490 201620 237880 1 1 1 1 1 1 1 1 1 1 1 9233100 0 9233100 10902 2674 10128 57068 69197 69197 1 LAEAEETAR Unmodified 988.48254 0.48253882 2181 Q8N163;Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 0 By MS/MS 1 0 1 1 32.565 32.595 2 8.9453E-05 8958 20211116_3439_TMUAki_TMT10x_S_F1 140.63 98.794 308450 520580 0 513020 328150 278670 362030 246720 290550 245550 400040 287180 485730 23561 520390 315350 297630 363240 252420 302600 239870 382510 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 308450 520580 0 513020 328150 278670 362030 246720 290550 245550 400040 287180 485730 23561 520390 315350 297630 363240 252420 302600 239870 382510 1 1 0 1 1 1 1 1 1 1 1 8352800 0 8352800 10903 2181 10129 57069 69198 69198 1 LAEAHAK Unmodified 738.40244 0.40243801 911 P33991 MCM4 DNA replication licensing factor MCM4 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 28.453 28.298 3 0.046938 8412 20211116_3441_TMUAki_TMT10x_S_F3 48.504 20.979 647110 1069000 7153.2 833740 792260 851440 834010 550250 620340 567120 752230 602580 996620 62350 867430 761140 859530 837180 575170 645120 553180 721570 2 2 2 2 2 2 2 2 2 2 2 479390 791820 4287.5 591440 591980 684850 609170 393400 462610 417900 538680 446390 738100 45318 618920 568310 685370 612470 415430 479740 407130 517290 1 1 1 1 1 1 1 1 1 1 1 167720 277190 2865.7 242290 200290 166590 224840 156850 157720 149220 213550 156190 258520 17032 248510 192830 174160 224700 159740 165370 146050 204280 1 1 1 1 1 1 1 1 1 1 1 15641000 9447300 6193900 10904 911 10130 57070;57071;57072 69199;69200 69200 2 LAEALPK Unmodified 740.44324 0.44324019 740 P20290;P20290-2 BTF3 Transcription factor BTF3 yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 46.449 46.613 2 0.014114 12142 20211116_3444_TMUAki_TMT10x_S_F5 94.262 17.415 3738100 6205800 87326 6307000 3524100 3088000 3815500 3459300 3509000 3053300 4583000 3481200 5791100 388300 6378900 3391700 3352800 3845500 3486300 3621400 2998800 4387800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3738100 6205800 87326 6307000 3524100 3088000 3815500 3459300 3509000 3053300 4583000 3481200 5791100 388300 6378900 3391700 3352800 3845500 3486300 3621400 2998800 4387800 1 1 1 1 1 1 1 1 1 1 1 383000000 0 383000000 10905 740 10131 57073;57074 69201;69202 69202 2 LAEALYIADRK Unmodified 1261.703 0.7030367 1649 Q13573 SNW1 SNW domain-containing protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 57.787 58.078 3 1.3801E-05 19070 20211116_3446_TMUAki_TMT10x_S_F7 108.24 79.917 7046800 12778000 275030 13739000 9185100 6339300 7163300 8339200 7120700 7753900 9007100 6563300 11926000 870490 13838000 8772900 6959500 7370400 8360300 7312900 7597000 8630400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7046800 12778000 275030 13739000 9185100 6339300 7163300 8339200 7120700 7753900 9007100 6563300 11926000 870490 13838000 8772900 6959500 7370400 8360300 7312900 7597000 8630400 1 1 1 1 1 1 1 1 1 1 1 878710000 570230000 308480000 10906 1649 10132 57075;57076;57077 69203;69204 69204 2 LAEAQIEELR Unmodified 1170.6245 0.62445203 2917 Q9NR28;Q9NR28-2;Q9NR28-3 DIABLO Diablo homolog, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 51.223 50.994 2 4.7568E-11 16414 20211116_3430_TMUAki_TMT10x_P_F3 209.73 158.54 13911000 21785000 41991 25837000 20585000 20251000 13949000 17158000 18118000 15809000 18776000 12952000 20343000 1234600 25989000 19570000 20906000 14625000 17560000 18273000 15495000 18092000 5 5 3 5 5 5 5 5 5 5 5 6641800 10071000 2098.6 12258000 14780000 14805000 8544200 8238400 8714300 7452700 8730200 6183800 9405700 617930 12389000 14012000 14778000 8998100 8684100 8858400 7311000 8421200 2 2 1 2 2 2 2 2 2 2 2 7269100 11714000 39892 13580000 5805000 5446100 5404900 8919200 9403900 8355800 10046000 6768500 10937000 616710 13600000 5558300 6127900 5627100 8876300 9414600 8184000 9670700 3 3 2 3 3 3 3 3 3 3 3 1461000000 813440000 647530000 10907 2917 10133 57078;57079;57080;57081;57082;57083 69205;69206;69207;69208;69209;69210 69207 6 LAEDAPNFDGPAAEGQPGQK Unmodified 2010.9283 0.9282982 1426 P78344;P78344-2 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 53.065 52.914 3 2.3916E-07 17261 20211116_3430_TMUAki_TMT10x_P_F3 98.942 82.449 1767700 2700500 0 3673200 5471800 4660700 2586100 2414500 2819100 1950500 2481300 1645800 2523400 181110 3693400 5173000 4636700 2781300 2554300 2845800 1924000 2404100 1 1 0 1 1 1 1 1 1 1 1 1767700 2700500 0 3673200 5471800 4660700 2586100 2414500 2819100 1950500 2481300 1645800 2523400 181110 3693400 5173000 4636700 2781300 2554300 2845800 1924000 2404100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 316450000 316450000 0 10908 1426 10134 57084;57085 69211;69212 69211 2 LAEDVVTFQTLPPQR Unmodified 1712.9097 0.90973501 2852 Q9HAV4 XPO5 Exportin-5 yes yes 0 0 0 0 By MS/MS 5 0 1 1 67.503 67.603 3 0.097885 21848 20211116_3433_TMUAki_TMT10x_P_F5 31.767 19.141 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10909 2852 10135 57086 69213 69213 1 LAEEESCREDVTR Unmodified 1592.71 0.71004893 2375 Q92896;Q92896-2;Q92896-3 GLG1 Golgi apparatus protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 30.899 30.923 3 9.0183E-37 8316 20211116_3439_TMUAki_TMT10x_S_F1 274.39 220.19 557150 961170 184.37 908380 935820 827350 624350 415020 478960 419270 666880 518730 896670 47397 929210 889210 838580 645090 442900 500290 409300 637500 2 2 1 2 2 2 2 2 2 2 2 277870 451910 0 459030 645950 591120 321310 230330 254040 220950 335010 258690 421710 23923 469760 610930 585940 340810 252120 264260 216180 320670 1 1 0 1 1 1 1 1 1 1 1 279280 509260 184.37 449350 289870 236230 303040 184680 224920 198310 331870 260040 474970 23474 459450 278280 252640 304280 190780 236030 193120 316830 1 1 1 1 1 1 1 1 1 1 1 139920000 82279000 57641000 10910 2375 10136 57087;57088 69214;69215 69215 2 LAEIGAPIQGNREELVER Unmodified 1993.0593 0.059252799 1633 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 0 1 By MS/MS By MS/MS 3.29 1.03 2 2 2 1 3 4 50.978 50.919 3 2.5783E-50 17459 20211116_3441_TMUAki_TMT10x_S_F3 226 199.85 55830000 91960000 383740 100090000 68925000 82070000 53786000 77815000 77381000 67380000 75690000 51984000 85839000 4877900 101270000 65712000 84624000 56080000 79019000 77630000 66236000 73067000 11 11 7 11 11 11 11 11 11 11 11 24482000 36587000 104050 38631000 42682000 56318000 32039000 32191000 32565000 27136000 30976000 22796000 34148000 2376300 39530000 40664000 55740000 33072000 33795000 33050000 26710000 29931000 5 5 3 5 5 5 5 5 5 5 5 31347000 55373000 279680 61461000 26243000 25752000 21747000 45624000 44816000 40244000 44713000 29187000 51691000 2501600 61736000 25048000 28884000 23008000 45224000 44579000 39526000 43137000 6 6 4 6 6 6 6 6 6 6 6 13937000000 6815000000 7121600000 10911 1633 10137 57089;57090;57091;57092;57093;57094;57095 69216;69217;69218;69219;69220;69221;69222;69223;69224;69225;69226 69222 11 LAEIHGVPR Unmodified 990.56106 0.56106391 113 O14531 DPYSL4 Dihydropyrimidinase-related protein 4 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 34.828 34.897 3 0.00044882 8781 20211116_3433_TMUAki_TMT10x_P_F5 101.11 76.251 512380 819860 7546.4 794030 844040 796970 607500 638450 619690 587820 735120 477130 764920 54158 811910 803820 808150 628960 655610 633990 576180 705570 2 2 2 2 2 2 2 2 2 2 2 303550 486110 3057.9 466560 630510 613330 378370 376830 363880 361290 428320 282660 453520 32595 479540 598410 610450 396530 394610 373100 353500 411190 1 1 1 1 1 1 1 1 1 1 1 208830 333750 4488.5 327480 213530 183640 229130 261620 255810 226530 306800 194480 311400 21563 332370 205410 197700 232430 261010 260880 222680 294380 1 1 1 1 1 1 1 1 1 1 1 88676000 46062000 42614000 10912 113 10138 57096;57097 69227;69228 69227 2 LAELEEFINGPNNAHIQQVGDR Unmodified 2463.2142 0.21424989 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.68 1.84 3 4 4 3 4 2 2 11 11 75.14 75.102 3;4 1.434E-68 27341 20211116_3441_TMUAki_TMT10x_S_F3 252.55 235.33 93752000 159210000 969060 145000000 102180000 148500000 117780000 99265000 96210000 106390000 118630000 87292000 148510000 7834900 148980000 98361000 149960000 117980000 103620000 99616000 103620000 113740000 42 42 23 42 42 42 42 42 42 42 42 47022000 77360000 572910 71583000 46740000 91461000 56702000 49632000 48036000 53164000 58627000 43783000 72164000 4076100 73731000 45079000 91008000 56726000 52679000 49624000 51777000 56228000 22 22 13 22 22 22 22 22 22 22 22 46730000 81853000 396160 73417000 55437000 57036000 61076000 49633000 48174000 53230000 60001000 43509000 76346000 3758800 75249000 53282000 58949000 61257000 50945000 49993000 51839000 57515000 20 20 10 20 20 20 20 20 20 20 20 30407000000 15840000000 14567000000 10913 1471 10139 57098;57099;57100;57101;57102;57103;57104;57105;57106;57107;57108;57109;57110;57111;57112;57113;57114;57115;57116;57117;57118;57119 69229;69230;69231;69232;69233;69234;69235;69236;69237;69238;69239;69240;69241;69242;69243;69244;69245;69246;69247;69248;69249;69250;69251;69252;69253;69254;69255;69256;69257;69258;69259;69260;69261;69262;69263;69264;69265;69266;69267;69268;69269;69270;69271 69255 43 LAELKQECLAR Unmodified 1329.7075 0.70747015 1445 P82979 SARNP SAP domain-containing ribonucleoprotein yes yes 0 0 0 1 By MS/MS 6 0 1 1 47.294 47.454 3 0.083633 12760 20211116_3445_TMUAki_TMT10x_S_F6 44.193 17.595 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10914 1445 10140 57120 69272 69272 1 LAELSDYRR Unmodified 1121.5829 0.58292157 2534 Q96PK6 RBM14 RNA-binding protein 14 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 38.84 38.901 3 8.9864E-05 9046 20211116_3444_TMUAki_TMT10x_S_F5 137.05 98.808 1847600 2949000 6644.6 3249300 4185100 3608800 2431200 3149500 3266400 2425100 2964400 1720400 2752900 192110 3299000 3969100 3643900 2583600 3203700 3275700 2398400 2869000 2 2 2 2 2 2 2 2 2 2 2 1199800 1899200 2205.7 2037200 3539200 3014800 1757800 2234700 2292800 1649200 1918900 1117100 1772700 134290 2083100 3348900 2993400 1892700 2294000 2295900 1634800 1862700 1 1 1 1 1 1 1 1 1 1 1 647820 1049800 4438.9 1212100 645880 593980 673360 914750 973590 775960 1045500 603220 980140 57819 1215900 620260 650440 690880 909710 979880 763560 1006400 1 1 1 1 1 1 1 1 1 1 1 224810000 187370000 37433000 10915 2534 10141 57121;57122;57123;57124 69273;69274;69275 69275 3 LAENFCVCHLATGDMLR Oxidation (M) 2021.9121 0.91213633 1228 P54819;P54819-5;P54819-2;P54819-3 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 0 0 1 0 By MS/MS By MS/MS 6 0.707 1 2 1 3 1 55.06 55.186 3 1.6702E-05 15923 20211116_3445_TMUAki_TMT10x_S_F6 87.668 77.329 7850900 12851000 171270 13129000 10584000 16250000 9801300 11518000 10481000 10648000 10935000 7311200 11992000 846270 13421000 10139000 16255000 10004000 11924000 10649000 10435000 10535000 5 5 4 5 5 5 5 5 5 5 5 6274100 10276000 109110 10445000 8972000 14727000 8394100 9108200 8426800 8350300 8628800 5842600 9589300 657120 10707000 8594700 14612000 8545700 9521500 8578500 8186600 8317600 4 4 3 4 4 4 4 4 4 4 4 1576700 2575000 62160 2684100 1612000 1522600 1407200 2410100 2054100 2297700 2306300 1468600 2403200 189150 2713100 1544300 1642700 1458100 2402300 2070300 2248700 2217000 1 1 1 1 1 1 1 1 1 1 1 2562800000 1610000000 952800000 10916 1228 10142 57125;57126;57127;57128 69276;69277;69278;69279;69280;69281 69281 1646 6 LAENFCVCHLATGDMLR Unmodified 2005.9172 0.91722171 1228 P54819;P54819-5;P54819-2;P54819-3 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 6 0.894 2 1 2 4 1 62.319 62.716 3 5.524E-07 21008 20211116_3446_TMUAki_TMT10x_S_F7 101.8 87.188 22461000 36247000 285040 40616000 26105000 31870000 25218000 20757000 18570000 20733000 25530000 20916000 33839000 2152100 40996000 25024000 32757000 25420000 21664000 19429000 20250000 24413000 5 5 4 5 5 5 5 5 5 5 5 14121000 22487000 214010 24936000 15958000 24429000 16291000 12707000 11759000 13052000 15019000 13150000 20992000 1369200 25258000 15321000 24654000 16367000 13522000 12277000 12733000 14387000 3 3 2 3 3 3 3 3 3 3 3 8340100 13761000 71025 15680000 10147000 7441400 8927000 8049200 6810800 7680800 10512000 7766000 12847000 782950 15738000 9703100 8102700 9053300 8142200 7152800 7516600 10026000 2 2 2 2 2 2 2 2 2 2 2 2424900000 1362400000 1062500000 10917 1228 10142 57129;57130;57131;57132;57133 69282;69283;69284;69285;69286;69287;69288 69287 7 LAENIDAQLKR Unmodified 1269.7041 0.70409934 963 P37198 NUP62 Nuclear pore glycoprotein p62 yes yes 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 45.6 45.727 3 0.028294 12930 20211116_3433_TMUAki_TMT10x_P_F5 54.871 29.856 6366900 10987000 76298 12008000 11096000 12415000 7599300 15150000 13809000 11275000 9905600 5928600 10255000 643830 12184000 10555000 12684000 8083400 15149000 13638000 11171000 9676400 3 3 2 3 3 3 3 3 3 3 3 4678000 7803700 25461 8333900 9294700 10620000 5866800 11031000 10117000 8218900 6943400 4355700 7283600 454850 8498700 8826200 10688000 6261800 11110000 9993600 8142900 6796300 2 2 1 2 2 2 2 2 2 2 2 1688900 3182900 50838 3674400 1801600 1794500 1732500 4119300 3692300 3056000 2962200 1572900 2971800 188980 3685600 1728800 1996300 1821700 4039100 3644700 3028400 2880100 1 1 1 1 1 1 1 1 1 1 1 539830000 453590000 86241000 10918 963 10143 57134;57135;57136;57137 69289;69290;69291;69292 69290 4 LAEPYGK Unmodified 776.40685 0.40685468 1026 P43243;P43243-2 MATR3 Matrin-3 yes no 0 0 0 0 By MS/MS 6 0 1 1 39.228 39.392 2 0.04521 9566 20211116_3445_TMUAki_TMT10x_S_F6 71.715 27.184 302560 490010 5739.5 512850 268610 272130 342880 261770 296300 286830 387000 281760 457320 29958 517980 259770 291840 342470 267420 306690 279100 370520 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 302560 490010 5739.5 512850 268610 272130 342880 261770 296300 286830 387000 281760 457320 29958 517980 259770 291840 342470 267420 306690 279100 370520 1 1 1 1 1 1 1 1 1 1 1 12966000 0 12966000 10919 1026 10144 57138 69293 69293 1 LAEQAER Unmodified 815.41373 0.41373097 1342;1395;825;895;1515;1331;896 P27348;P31946;P31946-2;P63104;P31947;P31947-2;P61981;P62258;Q04917 YWHAQ;YWHAB;YWHAZ;SFN;YWHAG;YWHAE;YWHAH 14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein sigma;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein epsilon;14-3-3 protein eta no no 0 0 0 0 By MS/MS By MS/MS 2.2 1.17 2 1 1 1 3 2 28.136 28.062 2 0.0021837 6816 20211116_3429_TMUAki_TMT10x_P_F2 166.45 69.373 819410 1373500 4233.2 1070100 771260 1213000 851390 519560 623150 594570 917350 762920 1280400 63488 1115300 741290 1211000 852350 565490 654130 577600 875830 4 5 1 5 5 4 5 4 4 4 5 767010 1280800 4233.2 995350 721690 1160600 782840 484480 584580 561000 863990 714150 1194000 61679 1038100 693440 1157000 784740 529000 613300 544750 824810 3 3 1 3 3 3 3 3 3 3 3 52393 92690 0 74759 49573 52426 68550 35075 38567 33571 53369 48764 86422 1808.3 77199 47851 54071 67613 36492 40828 32849 51025 1 2 0 2 2 1 2 1 1 1 2 50935000 28481000 22454000 10920 825;895;1395;896;1331;1342;1515 10145 57139;57140;57141;57142;57143 69294;69295;69296;69297 69295 4 LAEQAERYDDMAAAMK 2 Oxidation (M) 1843.808 0.80804841 895;1331 P31946;P31946-2;P61981 YWHAB;YWHAG 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed no no 0 0 2 1 By MS/MS By MS/MS 2.8 0.748 2 2 1 2 3 40.928 40.78 3;4 7.4754E-06 13362 20211116_3441_TMUAki_TMT10x_S_F3 98.508 24.388 5375400 8373600 11965 10362000 13110000 11161000 6673000 9403600 13179000 7436400 9343100 5004900 7820900 542000 10443000 12408000 11282000 7306700 9590800 12987000 7343800 9131700 6 6 2 6 6 6 6 6 6 6 6 2844200 4267800 9202.6 5654500 10099000 8632300 4316900 4534500 6571200 3642700 4772400 2648300 3987500 339820 5715100 9538300 8518200 4751000 4790500 6522600 3594400 4659400 2 2 1 2 2 2 2 2 2 2 2 2531200 4105800 2762.1 4707900 3010600 2529200 2356100 4869100 6608200 3793700 4570700 2356700 3833400 202180 4727700 2869300 2763600 2555700 4800300 6464400 3749500 4472300 4 4 1 4 4 4 4 4 4 4 4 1070300000 717590000 352680000 10921 895;1331 10146 57144;57145;57146;57147;57148 69298;69299;69300;69301;69302;69303 69303 1097;1098 6 LAEQAERYDDMAAAMK Oxidation (M) 1827.8131 0.81313379 895;1331 P31946;P31946-2;P61981 YWHAB;YWHAG 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed no no 0 0 1 1 By MS/MS By MS/MS 3.83 0.898 3 1 2 3 3 47.791 47.653 3;4 0.00032575 14868 20211116_3430_TMUAki_TMT10x_P_F3 77.562 18.891 9264000 16102000 54523 21320000 10057000 8227200 6133900 13519000 12923000 11154000 14668000 8625900 15044000 806790 21185000 9545900 9307800 6637100 13407000 12911000 10991000 14095000 4 4 2 4 4 4 4 4 4 4 4 1691600 2619700 0 4033700 5051800 3915900 2585400 1436900 1361300 1236000 2276700 1574900 2449700 176030 4013400 4781200 3940800 2713500 1580100 1470900 1215400 2167900 1 1 0 1 1 1 1 1 1 1 1 7572400 13482000 54523 17286000 5004800 4311300 3548500 12082000 11561000 9917700 12391000 7050900 12595000 630760 17172000 4764700 5367000 3923600 11827000 11440000 9775300 11928000 3 3 2 3 3 3 3 3 3 3 3 912850000 499860000 412990000 10922 895;1331 10146 57149;57150;57151;57152;57153;57154 69304;69305;69306;69307;69308;69309 69304 1097;1098 6 LAEQAERYDDMAAAMK Unmodified 1811.8182 0.81821917 895;1331 P31946;P31946-2;P61981 YWHAB;YWHAG 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed no no 0 0 0 1 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 56.882 56.843 3 6.8533E-30 18886 20211116_3430_TMUAki_TMT10x_P_F3 165.9 154.84 48058000 78990000 482260 109250000 53799000 29789000 37831000 21624000 16606000 22319000 54050000 44750000 73820000 4450800 108130000 51209000 35065000 38551000 22418000 19151000 21770000 50981000 6 6 4 6 6 6 6 6 6 6 6 9578100 14216000 240550 20261000 18299000 12032000 14282000 3787500 2944400 3816800 9727200 8920000 13288000 1140400 20119000 17460000 12580000 14346000 4267900 3732200 3726500 9173500 1 1 1 1 1 1 1 1 1 1 1 38480000 64774000 241710 88990000 35500000 17757000 23549000 17836000 13662000 18503000 44323000 35830000 60532000 3310300 88009000 33749000 22486000 24206000 18150000 15419000 18043000 41808000 5 5 3 5 5 5 5 5 5 5 5 2748900000 1020700000 1728200000 10923 895;1331 10146 57155;57156;57157;57158;57159 69310;69311;69312;69313;69314;69315;69316 69310 7 LAEQAERYDDMAACMK 2 Oxidation (M) 1932.8016 0.80158283 1395 P63104 YWHAZ 14-3-3 protein zeta/delta yes yes 0 0 2 1 By MS/MS By MS/MS 2.67 0.943 2 1 2 1 39.902 39.857 3 0.017436 10342 20211116_3431_TMUAki_TMT10x_P_F4 52.823 43.727 2868600 4448800 40676 5387100 11395000 10173000 4828000 6413500 8417800 3772500 5632100 2671100 4154700 385610 5501000 10762000 9984000 5351700 6631500 8307800 3793200 5519400 3 3 1 3 3 3 3 3 3 3 3 2538300 3953600 40676 4739200 11022000 9876500 4519300 5805200 7591500 3352100 4999300 2363700 3692100 364150 4856100 10407000 9653100 5019200 6034400 7496600 3374900 4902900 2 2 1 2 2 2 2 2 2 2 2 330240 495190 0 647880 372550 296620 308760 608330 826340 420320 632870 307430 462640 21464 644910 355190 330850 332540 597150 811140 418260 616500 1 1 0 1 1 1 1 1 1 1 1 386010000 364760000 21250000 10924 1395 10147 57160;57161;57162 69317;69318 69318 1873;1874 2 LAEQAERYDDMAACMK Oxidation (M) 1916.8067 0.80666821 1395 P63104 YWHAZ 14-3-3 protein zeta/delta yes yes 0 0 1 1 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 46.13 46.086 3 0.00083379 14248 20211116_3430_TMUAki_TMT10x_P_F3 67.646 46.316 2362700 3556200 14432 5341900 4342900 2923100 2452000 2147300 1917300 1745800 3285500 2200000 3325000 237070 5287300 4117500 3109600 2569500 2210300 2022500 1721600 3127000 2 2 2 2 2 2 2 2 2 2 2 1047100 1470800 12952 2147800 3230100 2246100 1623200 785120 796130 685900 1285100 975080 1375000 129460 2144800 3057600 2249200 1704900 869020 863470 673970 1224500 1 1 1 1 1 1 1 1 1 1 1 1315500 2085400 1480.5 3194000 1112700 677070 828880 1362200 1121200 1059900 2000400 1224900 1950100 107610 3142500 1059900 860400 864660 1341300 1159000 1047600 1902500 1 1 1 1 1 1 1 1 1 1 1 459300000 154540000 304760000 10925 1395 10147 57163;57164;57165 69319;69320 69319 1873;1874 2 LAEQAERYDDMAACMK Unmodified 1900.8118 0.81175358 1395 P63104 YWHAZ 14-3-3 protein zeta/delta yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 53.796 53.959 3 0.00093985 16022 20211116_3431_TMUAki_TMT10x_P_F4 63.462 57.025 7352700 10925000 0 14524000 14633000 11132000 10777000 4580500 3245300 3228300 7706300 6845200 10208000 600130 14512000 13927000 11403000 10900000 4947300 3789400 3208700 7295900 1 1 0 1 1 1 1 1 1 1 1 7352700 10925000 0 14524000 14633000 11132000 10777000 4580500 3245300 3228300 7706300 6845200 10208000 600130 14512000 13927000 11403000 10900000 4947300 3789400 3208700 7295900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1099300000 1099300000 0 10926 1395 10147 57166;57167;57168 69321;69322;69323 69321 3 LAEQAERYDDMASAMK Unmodified 1827.8131 0.81313379 1515 Q04917 YWHAH 14-3-3 protein eta yes yes 0 0 0 1 By MS/MS 3 1 1 1 2 47.644 47.572 3 1.6816E-05 13318 20211116_3431_TMUAki_TMT10x_P_F4 96.303 1.2882 19760000 31508000 182540 42336000 67177000 59425000 33215000 33356000 34933000 26937000 32072000 18400000 29440000 2452900 42681000 63568000 58898000 35521000 35037000 35362000 26572000 31027000 4 4 3 4 4 4 4 4 4 4 4 19760000 31508000 182540 42336000 67177000 59425000 33215000 33356000 34933000 26937000 32072000 18400000 29440000 2452900 42681000 63568000 58898000 35521000 35037000 35362000 26572000 31027000 4 4 3 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1138900000 1138900000 0 10927 1515 10148 57169;57170 69324;69325 69324 2 LAEQAERYDDMATCMK 2 Oxidation (M) 1962.8121 0.81214751 825 P27348 YWHAQ 14-3-3 protein theta yes yes 0 0 2 1 By MS/MS By MS/MS 2.57 0.495 3 4 4 3 40.103 39.971 3;4 0.00098875 12995 20211116_3441_TMUAki_TMT10x_S_F3 69.069 58.97 3212700 5136400 19225 7052300 8296900 6015300 3922800 4343900 5989600 3416100 5239300 2991400 4800000 337220 7043700 7845500 6154400 4271800 4473100 5976300 3374500 5077400 7 7 4 7 7 7 7 7 7 7 7 1862500 2818400 11156 4147400 6966400 4965400 2804100 2303000 3088500 1837500 2884000 1734200 2634800 221130 4149400 6574700 4948200 3070700 2461900 3122300 1813800 2788400 4 4 2 4 4 4 4 4 4 4 4 1350200 2318000 8069.7 2905000 1330500 1049800 1118800 2040900 2901100 1578500 2355300 1257200 2165100 116080 2894300 1270700 1206200 1201100 2011200 2854000 1560700 2289000 3 3 2 3 3 3 3 3 3 3 3 415640000 235760000 179880000 10928 825 10149 57171;57172;57173;57174;57175;57176;57177 69326;69327;69328;69329;69330;69331;69332 69331 993;994 7 LAEQAERYDDMATCMK Oxidation (M) 1946.8172 0.81723289 825 P27348 YWHAQ 14-3-3 protein theta yes yes 0 0 1 1 By MS/MS By MS/MS 3.17 0.687 1 3 2 4 2 46 45.902 3 8.5231E-06 12973 20211116_3431_TMUAki_TMT10x_P_F4 99.566 89.227 5873300 8801800 52204 13388000 16402000 11911000 8604300 5652300 5250300 5088600 8022500 5468900 8230100 666830 13312000 15533000 12085000 9031600 6045900 5586400 4993000 7653200 4 4 3 4 4 4 4 4 4 4 4 4987900 7453700 51640 11404000 15780000 11379000 8100700 4597300 4181500 4168100 6676900 4644500 6969800 596590 11354000 14940000 11441000 8497100 5003600 4514000 4088400 6363700 3 3 2 3 3 3 3 3 3 3 3 885440 1348100 563.75 1984800 621830 531870 503630 1055000 1068700 920530 1345600 824440 1260300 70242 1958200 593310 643210 534530 1042300 1072300 904580 1289500 1 1 1 1 1 1 1 1 1 1 1 814530000 753290000 61246000 10929 825 10149 57178;57179;57180;57181;57182;57183 69333;69334;69335;69336;69337 69335 993;994 5 LAEQAERYDDMATCMK Unmodified 1930.8223 0.82231827 825 P27348 YWHAQ 14-3-3 protein theta yes yes 0 0 0 1 By MS/MS By matching 4 0.707 1 2 1 3 1 52.81 52.948 3 2.1204E-21 15586 20211116_3431_TMUAki_TMT10x_P_F4 172.2 160.94 10449000 16316000 121320 23894000 23143000 15211000 16325000 5067300 4212700 4809900 11433000 9729500 15253000 1112900 23711000 22023000 15803000 16541000 5656300 5071900 4708200 10805000 3 3 2 3 3 3 3 3 3 3 3 10449000 16316000 121320 23894000 23143000 15211000 16325000 5067300 4212700 4809900 11433000 9729500 15253000 1112900 23711000 22023000 15803000 16541000 5656300 5071900 4708200 10805000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 748820000 553410000 195410000 10930 825 10149 57184;57185;57186;57187 69338;69339;69340;69341 69339 4 LAEQAERYDEMVESMK Oxidation (M) 1943.8605 0.86047792 1342 P62258 YWHAE 14-3-3 protein epsilon yes yes 0 0 1 1 By MS/MS By MS/MS 2 0.816 2 2 2 4 2 56.043 55.807 3 1.0289E-05 17991 20211116_3429_TMUAki_TMT10x_P_F2 99.003 87.733 30392000 48170000 495810 60254000 42990000 43246000 34350000 21547000 18061000 22467000 35727000 28301000 44993000 3065000 60362000 41028000 44618000 34790000 23030000 19714000 21904000 33917000 8 8 4 8 8 8 8 8 8 8 8 18122000 28286000 131370 34335000 32803000 34940000 25825000 13416000 10958000 13724000 21626000 16873000 26416000 1759500 34609000 31281000 35074000 26100000 14736000 12177000 13391000 20531000 4 4 2 4 4 4 4 4 4 4 4 12271000 19884000 364430 25919000 10188000 8306200 8524900 8130400 7103100 8742800 14101000 11428000 18577000 1305500 25752000 9747100 9544300 8690100 8293700 7536700 8513500 13386000 4 4 2 4 4 4 4 4 4 4 4 2116400000 1458700000 657730000 10931 1342 10150 57188;57189;57190;57191;57192;57193 69342;69343;69344;69345;69346;69347;69348;69349;69350;69351 69345 1800;1801 10 LAEQAERYDEMVESMK Unmodified 1927.8656 0.86556329 1342 P62258 YWHAE 14-3-3 protein epsilon yes yes 0 0 0 1 By MS/MS By MS/MS 2.71 1.03 1 2 2 2 4 3 66.182 65.986 3 1.2073E-21 20532 20211116_3428_TMUAki_TMT10x_P_F1 175.51 150.46 75849000 116850000 1007600 131420000 84394000 76348000 88644000 46620000 37025000 47797000 83410000 70628000 109090000 7057100 132210000 81070000 80507000 88095000 48936000 41571000 46632000 79027000 8 8 5 8 8 8 8 8 8 8 8 46738000 70444000 698800 77390000 51804000 58492000 58531000 31731000 26185000 32813000 52922000 43521000 65758000 4324000 78177000 49866000 60152000 58018000 33645000 29003000 32002000 50225000 5 5 3 5 5 5 5 5 5 5 5 29111000 46406000 308750 54026000 32590000 17855000 30113000 14889000 10840000 14984000 30488000 27107000 43330000 2733000 54036000 31205000 20354000 30078000 15291000 12568000 14630000 28802000 3 3 2 3 3 3 3 3 3 3 3 4775500000 2464000000 2311400000 10932 1342 10150 57194;57195;57196;57197;57198;57199;57200 69352;69353;69354;69355;69356;69357;69358 69352 7 LAEQAERYDEMVESMK 2 Oxidation (M) 1959.8554 0.85539254 1342 P62258 YWHAE 14-3-3 protein epsilon yes yes 0 0 2 1 By MS/MS By MS/MS 2.57 0.904 1 2 3 1 3 4 48.116 47.964 3;4 5.0812E-05 16306 20211116_3441_TMUAki_TMT10x_S_F3 82.349 70.183 16118000 27872000 133680 32957000 31584000 37708000 18983000 36522000 46837000 27222000 29884000 15008000 26026000 1598000 33334000 29970000 38095000 20776000 36914000 45828000 26970000 29353000 9 9 5 9 9 9 9 9 9 9 9 8884100 14685000 37570 17238000 25413000 31536000 14020000 19112000 25172000 14623000 15641000 8271900 13712000 960780 17619000 24081000 30965000 15162000 19924000 24782000 14466000 15383000 4 4 2 4 4 4 4 4 4 4 4 7233900 13186000 96111 15719000 6170800 6172700 4962800 17410000 21664000 12599000 14243000 6735900 12314000 637230 15714000 5889900 7129700 5614200 16990000 21046000 12503000 13970000 5 5 3 5 5 5 5 5 5 5 5 3562700000 1895300000 1667400000 10933 1342 10150 57201;57202;57203;57204;57205;57206;57207 69359;69360;69361;69362;69363;69364;69365;69366;69367;69368 69366 1800;1801 10 LAEQAERYDEMVESMKK 2 Oxidation (M) 2087.9504 0.95035555 1342 P62258 YWHAE 14-3-3 protein epsilon yes yes 0 0 2 2 By MS/MS By MS/MS 3.88 0.927 1 1 4 2 4 4 45.62 45.704 4;5 0.0003235 13035 20211116_3442_TMUAki_TMT10x_S_F4 71.558 60.924 24212000 38724000 139070 46742000 44284000 48421000 26427000 62796000 79131000 41440000 46589000 22543000 36163000 2154100 47143000 42003000 49548000 29372000 62482000 77042000 41352000 45950000 11 11 5 11 11 11 11 11 11 11 11 9905000 14932000 107850 18007000 31234000 35381000 15322000 23803000 29743000 15683000 17938000 9221900 13944000 1040400 18413000 29543000 34712000 16820000 24542000 29208000 15652000 17670000 4 4 2 4 4 4 4 4 4 4 4 14307000 23792000 31219 28735000 13050000 13041000 11105000 38993000 49389000 25756000 28651000 13321000 22219000 1113600 28731000 12460000 14836000 12551000 37939000 47833000 25700000 28280000 7 7 3 7 7 7 7 7 7 7 7 4789000000 3024100000 1764900000 10934 1342 10151 57208;57209;57210;57211;57212;57213;57214;57215 69369;69370;69371;69372;69373;69374;69375;69376;69377;69378 69376 1800;1801 10 LAEQAERYDEMVESMKK Oxidation (M) 2071.9554 0.95544093 1342 P62258 YWHAE 14-3-3 protein epsilon yes yes 0 0 1 2 By MS/MS By MS/MS 4.4 1.02 2 4 2 2 6 4 52.312 52.395 4 1.8805E-05 17152 20211116_3430_TMUAki_TMT10x_P_F3 89.866 76.274 80093000 123880000 325990 157750000 148480000 137090000 99020000 79302000 64769000 76749000 104490000 74575000 115720000 7681700 158230000 141130000 139630000 101970000 83469000 68799000 75062000 99564000 15 15 9 15 15 15 15 15 15 15 15 51461000 78494000 177760 99908000 126090000 117940000 82695000 50632000 40672000 48868000 66573000 47916000 73323000 5444400 100680000 119820000 117520000 84849000 54823000 44134000 47800000 63419000 9 9 6 9 9 9 9 9 9 9 9 28632000 45391000 148230 57843000 22390000 19149000 16326000 28671000 24097000 27881000 37912000 26659000 42401000 2237300 57551000 21313000 22108000 17118000 28646000 24665000 27262000 36145000 6 6 3 6 6 6 6 6 6 6 6 7114800000 4491800000 2623000000 10935 1342 10151 57216;57217;57218;57219;57220;57221;57222;57223;57224;57225 69379;69380;69381;69382;69383;69384;69385;69386;69387;69388;69389;69390;69391;69392;69393 69379 1800;1801 15 LAEQAERYDEMVESMKK Unmodified 2055.9605 0.96052631 1342 P62258 YWHAE 14-3-3 protein epsilon yes yes 0 0 0 2 By MS/MS By MS/MS 5.2 1.25 1 2 3 2 2 6 4 61.598 61.733 3;4 1.8504E-30 18253 20211116_3434_TMUAki_TMT10x_P_F6 198.77 182.27 222400000 355820000 2343100 442820000 278540000 211000000 231280000 104160000 81339000 109080000 234160000 207090000 332350000 21195000 442140000 266020000 226850000 232430000 111440000 94732000 106330000 221150000 16 16 11 16 16 16 16 16 16 16 16 97723000 154310000 1215700 193190000 165090000 142300000 149690000 50737000 37720000 50152000 103960000 90999000 144130000 10100000 193580000 157980000 146050000 149180000 56189000 45624000 49005000 98234000 9 9 5 9 9 9 9 9 9 9 9 124680000 201510000 1127300 249630000 113450000 68696000 81591000 53425000 43619000 58925000 130200000 116090000 188210000 11095000 248560000 108040000 80800000 83252000 55254000 49109000 57323000 122920000 7 7 6 7 7 7 7 7 7 7 7 11663000000 6986200000 4677300000 10936 1342 10151 57226;57227;57228;57229;57230;57231;57232;57233;57234;57235 69394;69395;69396;69397;69398;69399;69400;69401;69402;69403;69404;69405;69406;69407;69408;69409 69400 16 LAEQFPR Unmodified 859.4552 0.45520186 2509 Q96K17;Q96K17-2 BTF3L4 Transcription factor BTF3 homolog 4 yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 1 1 1 1 2 39.864 39.989 2 0.025047 10792 20211116_3442_TMUAki_TMT10x_S_F4 82.671 49.314 1970200 3180600 15871 3524100 2536900 2716200 2502400 2877900 3611900 2501500 3210900 1834500 2969100 172200 3558800 2431600 2820500 2574500 2906600 3611700 2458600 3109900 2 2 1 2 2 2 2 2 2 2 2 526360 922870 15871 840460 1271400 1410300 923070 1107800 1486700 793300 1012800 490210 860830 68864 871750 1211300 1394800 971960 1132200 1470900 787740 991700 1 1 1 1 1 1 1 1 1 1 1 1443900 2257700 0 2683600 1265500 1305800 1579400 1770100 2125200 1708200 2198100 1344300 2108300 103340 2687000 1220400 1425700 1602500 1774400 2140800 1670900 2118200 1 1 0 1 1 1 1 1 1 1 1 355340000 26428000 328910000 10937 2509 10152 57236;57237;57238 69410;69411 69411 2 LAETQEEISAEVAAK Unmodified 1587.7992 0.79918151 2486 Q9Y383;Q96HJ9-2;Q9Y383-3;Q9Y383-2 LUC7L2 Putative RNA-binding protein Luc7-like 2 yes no 0 0 0 0 By MS/MS By MS/MS 2.33 1.11 2 1 2 1 3 3 62.917 62.732 3 1.3306E-19 20800 20211116_3429_TMUAki_TMT10x_P_F2 170.11 146.74 12490000 19872000 256600 18552000 18161000 27842000 15754000 20991000 19308000 18660000 18145000 11631000 18538000 1270800 19158000 17363000 27636000 16216000 21618000 19446000 18320000 17540000 4 4 3 4 4 4 4 4 4 4 4 9859400 15208000 175050 14453000 14864000 24972000 12758000 16273000 15025000 14633000 14132000 9180700 14187000 967370 14955000 14205000 24596000 13121000 16935000 15154000 14359000 13660000 3 3 2 3 3 3 3 3 3 3 3 2631000 4664400 81554 4098300 3296600 2869700 2996100 4718000 4283200 4026600 4013400 2450400 4350300 303460 4202500 3158300 3040800 3094600 4683000 4291500 3961100 3879900 1 1 1 1 1 1 1 1 1 1 1 1802000000 1321200000 480860000 10938 2486 10153 57239;57240;57241;57242;57243;57244 69412;69413;69414;69415;69416;69417;69418 69414 7 LAETYLHR Unmodified 1001.5294 0.52942943 810 P26196 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 0 0 0 0 By MS/MS 5.67 0.471 1 2 3 33.799 33.772 3 0.00079087 9258 20211116_3433_TMUAki_TMT10x_P_F5 104.06 73.487 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10939 810 10154 57245;57246;57247 69419;69420;69421 69419 3 LAFNSLLEK Unmodified 1033.5808 0.5807963 332 O75400;O75400-2;O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 0 0 0 0 By MS/MS By MS/MS 6 2.92 1 1 2 3 1 69.836 70.099 2 3.002E-05 21824 20211116_3447_TMUAki_TMT10x_S_F8 132.01 59.463 11954000 18866000 169500 17899000 17692000 26606000 16463000 15219000 15956000 14764000 15891000 11131000 17600000 1159900 18458000 16939000 26312000 16747000 16035000 16252000 14438000 15332000 2 2 1 2 2 2 2 2 2 2 2 11954000 18866000 169500 17899000 17692000 26606000 16463000 15219000 15956000 14764000 15891000 11131000 17600000 1159900 18458000 16939000 26312000 16747000 16035000 16252000 14438000 15332000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1496500000 1496500000 0 10940 332 10155 57248;57249;57250;57251 69422;69423;69424;69425 69425 4 LAFYPNQDGDILR Unmodified 1520.7623 0.7623425 1744 Q14C86;Q14C86-6;Q14C86-5;Q14C86-4;Q14C86-2;Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 yes no 0 0 0 0 By MS/MS 6 0 1 1 67.555 67.488 2 0.08221 21022 20211116_3445_TMUAki_TMT10x_S_F6 48.44 30 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10941 1744 10156 57252 69426 69426 1 LAGAFSSDTSFF Unmodified 1248.5663 0.56626845 1759 Q15042;Q15042-3 RAB3GAP1 Rab3 GTPase-activating protein catalytic subunit yes no 0 0 0 0 By matching By MS/MS 6 0 2 1 1 80.776 80.771 2 1.4606E-08 26436 20211116_3445_TMUAki_TMT10x_S_F6 141.78 133.84 1114200 2188300 0 1912800 1455300 1330900 1678100 1061900 1158000 1007900 1490900 1037300 2040900 87599 1962100 1400300 1385700 1674400 1091600 1212700 986580 1427900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1114200 2188300 0 1912800 1455300 1330900 1678100 1061900 1158000 1007900 1490900 1037300 2040900 87599 1962100 1400300 1385700 1674400 1091600 1212700 986580 1427900 1 1 0 1 1 1 1 1 1 1 1 521460000 185790000 335670000 10942 1759 10157 57253;57254 69427 69427 1 LAGANPAVITCDELLLGHEK Unmodified 2120.0936 0.093589394 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 5.56 1.07 2 2 3 2 5 4 67.833 67.887 3;4 2.6443E-19 20766 20211116_3434_TMUAki_TMT10x_P_F6 159.26 147.99 82266000 137960000 800320 144970000 98830000 123500000 92513000 97271000 98315000 97876000 109340000 76600000 128750000 7281800 147080000 94618000 126550000 94350000 100240000 100160000 95566000 105140000 19 19 13 19 19 19 19 19 19 19 19 42041000 67963000 258530 72228000 50501000 83345000 49933000 49428000 50874000 49179000 53569000 39143000 63433000 3382300 73549000 48394000 83459000 50708000 51959000 51810000 48041000 51593000 9 9 5 9 9 9 9 9 9 9 9 40225000 69992000 541780 72747000 48329000 40156000 42580000 47843000 47442000 48697000 55772000 37457000 65321000 3899500 73532000 46224000 43091000 43642000 48281000 48347000 47525000 53543000 10 10 8 10 10 10 10 10 10 10 10 10838000000 5825200000 5013100000 10943 1433 10158 57255;57256;57257;57258;57259;57260;57261;57262;57263 69428;69429;69430;69431;69432;69433;69434;69435;69436;69437;69438;69439;69440;69441;69442;69443;69444;69445;69446;69447 69432 20 LAGESESNLR Unmodified 1074.5306 0.53055165 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.816 1 1 1 1 2 33.06 32.91 2 1.0493E-09 8669 20211116_3429_TMUAki_TMT10x_P_F2 190.62 138.76 991540 1631500 0 1502900 1844300 2208600 1254800 1065100 1208700 1537000 1405700 923170 1521900 88061 1552800 1753200 2180700 1302200 1154800 1238700 1481600 1350000 2 2 0 2 2 2 2 2 2 2 2 731370 1174800 0 1024100 1557000 1901000 969330 790700 914530 1246300 1005600 680940 1095700 66926 1068500 1477800 1857600 1012300 873600 936000 1198500 967270 1 1 0 1 1 1 1 1 1 1 1 260170 456650 0 478800 287310 307590 285450 274450 294220 290630 400120 242230 426190 21135 484330 275380 323160 289910 281200 302690 283180 382710 1 1 0 1 1 1 1 1 1 1 1 83207000 51318000 31889000 10944 1235 10159 57264;57265;57266 69448;69449 69448 2 LAGESESNLRK Unmodified 1202.6255 0.62551466 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 1 By MS/MS 4 0 1 1 33.134 33.16 3 4.3574E-15 7619 20211116_3431_TMUAki_TMT10x_P_F4 195.8 163.76 1984100 3106300 27677 2906600 2687600 2897300 2038400 1220200 1531800 1334800 2238700 1847600 2897700 200140 2979200 2562400 2914400 2085900 1328700 1605600 1298900 2137700 1 1 1 1 1 1 1 1 1 1 1 1984100 3106300 27677 2906600 2687600 2897300 2038400 1220200 1531800 1334800 2238700 1847600 2897700 200140 2979200 2562400 2914400 2085900 1328700 1605600 1298900 2137700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 125060000 125060000 0 10945 1235 10160 57267 69450 69450 1 LAGEVARSPLKEFDK Unmodified 1658.8992 0.89917033 1762 Q15049;Q15049-2 MLC1 Membrane protein MLC1 yes no 0 0 0 2 By MS/MS By MS/MS 8 0 2 1 1 69.053 69.029 3 0.0022167 21367 20211116_3447_TMUAki_TMT10x_S_F8 69.594 39.905 38137000 53186000 368960 43838000 32956000 32385000 35771000 21082000 22135000 21814000 42917000 35513000 49594000 3433100 45211000 31692000 33444000 35715000 22027000 23852000 21274000 40758000 3 3 3 3 3 3 3 3 3 3 3 25828000 30445000 191860 27284000 18878000 23291000 21721000 13826000 13731000 13691000 29356000 24050000 28397000 2222800 27998000 18185000 23761000 21637000 14531000 14873000 13377000 27835000 2 2 2 2 2 2 2 2 2 2 2 12309000 22741000 177100 16553000 14077000 9093900 14050000 7255700 8404000 8122300 13562000 11463000 21196000 1210300 17213000 13508000 9683100 14078000 7495800 8979700 7897000 12923000 1 1 1 1 1 1 1 1 1 1 1 3785100000 1807400000 1977700000 10946 1762 10161 57268;57269 69451 69451 1 LAGFLDLTEQEFR Unmodified 1537.7777 0.77765821 3224 Q9Y262;Q9Y262-2 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 0 0 0 0 By MS/MS By MS/MS 3.8 1.66 1 2 1 2 2 2 5 5 79.818 79.799 2 8.2254E-24 26874 20211116_3433_TMUAki_TMT10x_P_F5 185.18 158.08 26985000 43970000 5176.5 41416000 31119000 37776000 32949000 23456000 23137000 25761000 32520000 25124000 41019000 2079000 42377000 29870000 38387000 33022000 24640000 24301000 25065000 31080000 8 8 1 8 8 8 8 8 8 8 8 14460000 22450000 5176.5 21557000 14272000 24041000 16318000 12350000 12396000 14062000 16978000 13463000 20945000 1141600 22092000 13732000 24075000 16323000 13198000 12945000 13663000 16236000 4 4 1 4 4 4 4 4 4 4 4 12526000 21520000 0 19859000 16847000 13736000 16631000 11106000 10742000 11699000 15542000 11662000 20074000 937380 20285000 16138000 14312000 16699000 11442000 11356000 11401000 14844000 4 4 0 4 4 4 4 4 4 4 4 6323500000 3071600000 3251900000 10947 3224 10162 57270;57271;57272;57273;57274;57275;57276;57277;57278;57279 69452;69453;69454;69455;69456;69457;69458;69459;69460 69455 9 LAGGAAIK Unmodified 699.42792 0.42792448 151 O14979 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes yes 0 0 0 0 By MS/MS 7 0 1 1 37.897 38.335 2 0.016965 10686 20211116_3435_TMUAki_TMT10x_P_F7 71.378 24.714 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10948 151 10163 57280 69461 69461 1 LAGGDWFTSR Unmodified 1108.5302 0.53015772 869 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 0 0 By MS/MS 7 0 1 1 59.04 59.772 2 0.033618 19287 20211116_3435_TMUAki_TMT10x_P_F7 58.916 47.068 7078400 13570000 0 12244000 12025000 16396000 11054000 8533300 6839400 8471500 10389000 6589300 12657000 488040 12646000 11495000 16270000 11133000 9071000 7268300 8276300 9911900 1 1 0 1 1 1 1 1 1 1 1 7078400 13570000 0 12244000 12025000 16396000 11054000 8533300 6839400 8471500 10389000 6589300 12657000 488040 12646000 11495000 16270000 11133000 9071000 7268300 8276300 9911900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 426140000 426140000 0 10949 869 10164 57281 69462 69462 1 LAGPQLVQMFIGDGAK Unmodified 1643.8705 0.87051274 711 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 0 0 By MS/MS By MS/MS 4 2.89 1 2 1 2 2 4 79.856 79.822 3 8.4771E-10 26390 20211116_3440_TMUAki_TMT10x_S_F2 107.98 91.31 6204100 9571100 44990 9819500 5574200 8246500 7391700 2870600 1863200 3214500 6243100 5777000 8931800 547470 9976400 5393200 8377200 7231600 3200200 2292900 3125300 5886900 1 1 1 1 1 1 1 1 1 1 1 6204100 9571100 44990 9819500 5574200 8246500 7391700 2870600 1863200 3214500 6243100 5777000 8931800 547470 9976400 5393200 8377200 7231600 3200200 2292900 3125300 5886900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1503400000 1127200000 376230000 10950 711 10165 57282;57283;57284;57285;57286;57287 69463;69464;69465;69466;69467 69466 5 LAGPQLVQMFIGDGAK Oxidation (M) 1659.8654 0.86542736 711 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 1 0 By MS/MS By matching 3.33 0.471 2 1 2 1 78.529 78.482 2 0.040471 26113 20211116_3431_TMUAki_TMT10x_P_F4 50.194 28.202 11921000 17680000 1065.6 16627000 9286400 16702000 10972000 8008600 8653700 9572000 13232000 11099000 16493000 772500 17037000 8935000 16814000 10969000 8628100 9067500 9284100 12622000 2 2 1 2 2 2 2 2 2 2 2 11921000 17680000 1065.6 16627000 9286400 16702000 10972000 8008600 8653700 9572000 13232000 11099000 16493000 772500 17037000 8935000 16814000 10969000 8628100 9067500 9284100 12622000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2314700000 1900500000 414120000 10951 711 10165 57288;57289;57290 69468;69469 69469 801 2 LAGSLLTQALESHAEGFR Unmodified 1898.985 0.98502522 1660 Q13724;Q13724-2 MOGS Mannosyl-oligosaccharide glucosidase yes no 0 0 0 0 By MS/MS 8 0 1 1 73.122 73.154 3 0.00010632 23591 20211116_3436_TMUAki_TMT10x_P_F8 71.842 56.87 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10952 1660 10166 57291 69470 69470 1 LAGSLLTQALESHAEGFRER Unmodified 2184.1287 0.12872935 1660 Q13724;Q13724-2 MOGS Mannosyl-oligosaccharide glucosidase yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 64.186 64.458 4 3.2066E-24 19504 20211116_3447_TMUAki_TMT10x_S_F8 164.2 134.86 23129000 35434000 212800 36360000 27969000 33506000 27275000 23583000 21368000 21448000 26276000 21536000 33067000 1704700 36985000 26804000 34087000 27520000 24414000 22171000 21035000 25195000 6 6 3 6 6 6 6 6 6 6 6 11684000 18132000 189180 19443000 15017000 23424000 15483000 13766000 12269000 12174000 14427000 10881000 16924000 858220 19802000 14422000 23400000 15581000 14436000 12699000 11955000 13850000 3 3 2 3 3 3 3 3 3 3 3 11445000 17301000 23618 16917000 12952000 10082000 11792000 9816900 9098700 9274600 11849000 10655000 16143000 846450 17183000 12382000 10687000 11938000 9978300 9471800 9080400 11345000 3 3 1 3 3 3 3 3 3 3 3 2057900000 1355300000 702600000 10953 1660 10167 57292;57293;57294 69471;69472;69473;69474;69475;69476 69474 6 LAGTQPLEVLEAVQR Unmodified 1622.8992 0.89917033 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.44 1.26 1 4 4 4 5 10 8 74.611 74.626 2;3 3.4987E-85 23511 20211116_3434_TMUAki_TMT10x_P_F6 345.64 268.96 66938000 111330000 317050 104080000 83792000 95280000 81029000 74808000 73662000 79519000 87669000 62324000 103860000 5522200 106560000 80257000 97148000 82108000 77233000 75758000 77468000 84137000 19 19 6 19 19 19 19 19 19 19 19 23873000 38359000 57604 36245000 24310000 44826000 28583000 26094000 25999000 27196000 29808000 22226000 35785000 1774200 37254000 23403000 44716000 28690000 27509000 26698000 26515000 28637000 7 7 2 7 7 7 7 7 7 7 7 43065000 72974000 259450 67839000 59482000 50454000 52446000 48714000 47663000 52324000 57861000 40097000 68074000 3748100 69310000 56854000 52432000 53418000 49725000 49060000 50953000 55500000 12 12 4 12 12 12 12 12 12 12 12 28562000000 12706000000 15856000000 10954 769 10168 57295;57296;57297;57298;57299;57300;57301;57302;57303;57304;57305;57306;57307;57308;57309;57310;57311;57312 69477;69478;69479;69480;69481;69482;69483;69484;69485;69486;69487;69488;69489;69490;69491;69492;69493;69494;69495;69496;69497;69498 69482 22 LAHCEELR Unmodified 1026.4917 0.49166372 295 O60841 EIF5B Eukaryotic translation initiation factor 5B yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 29.615 29.367 3 0.0024675 7297 20211116_3429_TMUAki_TMT10x_P_F2 91.783 76.449 363610 557130 3910.8 475920 450290 452530 336400 331170 2597000 477740 411680 338590 519560 34987 490910 429130 459720 417160 347220 2465600 460550 464780 2 2 1 2 2 2 2 2 2 2 2 200510 305270 3910.8 235900 274780 316800 151770 176900 2322200 325780 207680 186720 284590 21308 246770 260620 314600 227570 191380 2192500 312040 265800 1 1 1 1 1 1 1 1 1 1 1 163100 251860 0 240020 175510 135730 184630 154270 274790 151960 204000 151870 234960 13679 244140 168520 145120 189590 155850 273100 148510 198980 1 1 0 1 1 1 1 1 1 1 1 9745700 4748600 4997100 10955 295 10169 57313;57314 69499;69500 69499 2 LAHEVGWK Unmodified 938.4974 0.49740102 983 P40429 RPL13A 60S ribosomal protein L13a yes yes 0 0 0 0 By MS/MS By MS/MS 6.14 0.833 2 2 3 3 4 39.935 40.178 3 0.0005758 9627 20211116_3434_TMUAki_TMT10x_P_F6 120.46 93.593 7620300 11798000 52356 12622000 11556000 7419100 9799300 3790200 3360700 3892500 8334100 7095600 11012000 727230 12741000 11038000 7797500 9832400 4039800 3877200 3797400 7885600 6 6 4 6 6 6 6 6 6 6 6 4499500 6666000 21012 7133400 8495300 5601200 6403200 2119300 1737800 2122200 4729100 4189600 6221900 440830 7221400 8093800 5722400 6460000 2330600 2078200 2072500 4469400 2 2 1 2 2 2 2 2 2 2 2 3120800 5132400 31344 5488700 3060300 1817900 3396100 1670900 1623000 1770300 3605000 2906000 4790400 286400 5519300 2944600 2075000 3372400 1709200 1799000 1724900 3416300 4 4 3 4 4 4 4 4 4 4 4 394780000 175600000 219180000 10956 983 10170 57315;57316;57317;57318;57319;57320;57321 69501;69502;69503;69504;69505;69506;69507;69508;69509 69503 9 LAHGGQVNLDMEDHRDEDFVKPK Unmodified 2649.2605 0.26054816 3203 Q9UNZ2;Q9UNZ2-5;Q9UNZ2-4;Q9UNZ2-6 NSFL1C NSFL1 cofactor p47 yes no 0 0 0 2 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 43.447 43.597 6 4.2077E-21 10969 20211116_3444_TMUAki_TMT10x_S_F5 155.87 142.71 7933000 11964000 156590 15826000 10338000 8478200 7023600 6588700 5963000 6204700 9755800 7387400 11178000 814320 15762000 9836900 9047800 7264800 6782800 6247300 6075600 9293700 4 4 3 4 4 4 4 4 4 4 4 2820900 3766000 71544 5232900 6150600 5221700 3362200 2133700 2211200 2196500 3199200 2627100 3519500 347180 5234600 5831800 5250800 3520600 2327100 2335000 2142700 3055600 1 1 1 1 1 1 1 1 1 1 1 5112100 8197900 85047 10593000 4187000 3256500 3661400 4455000 3751800 4008200 6556600 4760400 7658500 467140 10528000 4005200 3797000 3744200 4455700 3912300 3933000 6238000 3 3 2 3 3 3 3 3 3 3 3 906350000 539600000 366760000 10957 3203 10171 57322;57323;57324 69510;69511;69512;69513 69512 4 LAHGGQVNLDMEDHRDEDFVKPK Oxidation (M) 2665.2555 0.25546278 3203 Q9UNZ2;Q9UNZ2-5;Q9UNZ2-4;Q9UNZ2-6 NSFL1C NSFL1 cofactor p47 yes no 0 0 1 2 By MS/MS 5 0 1 1 39.012 39.144 6 3.2222E-16 9153 20211116_3444_TMUAki_TMT10x_S_F5 139.11 121.05 2208700 3615900 7193.7 3944600 2308300 2440700 2318700 3924000 4315900 3542800 3803000 2056400 3375300 171590 3978500 2212800 2612500 2413200 3903400 4285100 3475800 3684500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2208700 3615900 7193.7 3944600 2308300 2440700 2318700 3924000 4315900 3542800 3803000 2056400 3375300 171590 3978500 2212800 2612500 2413200 3903400 4285100 3475800 3684500 2 2 1 2 2 2 2 2 2 2 2 383480000 0 383480000 10958 3203 10171 57325 69514;69515 69514 3192 2 LAHLGVQVKGEDEEENNLEVR Unmodified 2377.1874 0.18736644 494 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.22 1.31 1 2 2 2 2 5 4 47.686 47.714 4 2.7483E-91 15069 20211116_3430_TMUAki_TMT10x_P_F3 297 271.41 35126000 55850000 648450 63622000 60355000 62758000 39915000 53306000 55715000 45505000 53653000 32710000 52143000 3807700 64343000 57393000 63774000 42046000 54442000 55916000 44764000 51821000 16 16 13 16 16 16 16 16 16 16 16 19830000 30540000 299880 35050000 44325000 48235000 26305000 29613000 31520000 24822000 30008000 18466000 28514000 2204500 35635000 42062000 47907000 27786000 30905000 31784000 24440000 28994000 7 7 4 7 7 7 7 7 7 7 7 15296000 25310000 348570 28572000 16030000 14523000 13611000 23693000 24196000 20684000 23646000 14244000 23629000 1603300 28708000 15331000 15867000 14260000 23537000 24132000 20325000 22827000 9 9 9 9 9 9 9 9 9 9 9 7541500000 4777600000 2763900000 10959 494 10172 57326;57327;57328;57329;57330;57331;57332;57333;57334 69516;69517;69518;69519;69520;69521;69522;69523;69524;69525;69526;69527;69528;69529;69530;69531 69516 16 LAHPNKPK Unmodified 903.52904 0.5290355 2834 Q9H910;Q9H910-3;Q9H910-2 HN1L Hematological and neurological expressed 1-like protein yes no 0 0 0 1 By matching By MS/MS 1 0 2 1 1 28.497 28.544 3 0.041869 7297 20211116_3439_TMUAki_TMT10x_S_F1 52.716 34.101 74176 155740 1881.9 128160 92984 80654 110390 60293 69371 80809 113760 69079 145220 8167 131980 89709 84638 109800 62944 73944 78077 108360 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 74176 155740 1881.9 128160 92984 80654 110390 60293 69371 80809 113760 69079 145220 8167 131980 89709 84638 109800 62944 73944 78077 108360 1 1 1 1 1 1 1 1 1 1 1 3808600 2912400 896190 10960 2834 10173 57335;57336 69532 69532 1 LAHYIDR Unmodified 886.4661 0.4661009 1505 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 33.548 33.597 3 0.037555 6739 20211116_3444_TMUAki_TMT10x_S_F5 54.205 12.903 514460 793730 1212.2 745770 783030 839580 543990 446650 517820 450790 628060 479020 740460 47544 765600 744870 840690 563480 474070 531850 440090 602460 2 2 2 2 2 2 2 2 2 2 2 338580 513120 731.52 510420 627920 682060 377190 334460 388930 330610 444770 315260 478780 32805 523470 595820 676440 396070 357490 397140 323050 427320 1 1 1 1 1 1 1 1 1 1 1 175880 280620 480.7 235350 155110 157520 166800 112180 128890 120180 183300 163760 261680 14739 242130 149050 164250 167410 116590 134710 117040 175130 1 1 1 1 1 1 1 1 1 1 1 68529000 54542000 13987000 10961 1505 10174 57337;57338;57339 69533;69534 69534 2 LAHYNKR Unmodified 900.49298 0.49298435 290;528;2613;2191 Q93079;Q99877;P62807;P58876;O60814;Q5QNW6;Q99879;Q5QNW6-2;P33778;Q16778;P23527;P06899;Q6DRA6;Q6DN03;Q8N257;Q99880 HIST1H2BH;HIST1H2BN;HIST1H2BC;HIST1H2BD;HIST1H2BK;HIST2H2BF;HIST1H2BM;HIST1H2BB;HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST2H2BD;HIST2H2BC;HIST3H2BB;HIST1H2BL Histone H2B type 1-H;Histone H2B type 1-N;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type 2-F;Histone H2B type 1-M;Histone H2B type 1-B;Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 3-B;Histone H2B type 1-L no no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 27.217 26.956 3 0.0012385 6256 20211116_3429_TMUAki_TMT10x_P_F2 128.82 94.727 448190 788910 8489.9 557130 788990 1296300 656610 1114100 906110 662990 739550 417370 735270 49843 595790 753700 1270900 680670 1128400 904980 666090 718570 3 3 3 3 3 3 3 3 3 3 3 328090 594940 4392.2 417400 553340 1167000 523140 877860 736800 522700 551610 305520 554480 34449 449570 530080 1136100 538840 896510 733650 525130 537860 2 2 2 2 2 2 2 2 2 2 2 120100 193970 4097.7 139730 235640 129330 133460 236230 169310 140280 187940 111860 180790 15394 146220 223630 134800 141830 231910 171330 140960 180720 1 1 1 1 1 1 1 1 1 1 1 16343000 13045000 3297300 10962 290;528;2191;2613 10175 57340;57341 69535;69536;69537 69535 3 LAIKLPDDQIPK Unmodified 1349.7919 0.79185171 1487 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 1 By MS/MS By MS/MS 7.25 0.433 3 1 2 2 59.525 60.006 3 8.901E-08 18184 20211116_3436_TMUAki_TMT10x_P_F8 109.22 82.623 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10963 1487 10176 57342;57343;57344;57345 69538;69539;69540;69541 69539 4 LAILGIHNEVSK Unmodified 1292.7452 0.74523587 644 P12814;P12814-2;P12814-3;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 By MS/MS By MS/MS 6 2.92 1 1 2 2 2 54.91 54.934 3 2.4245E-09 15596 20211116_3447_TMUAki_TMT10x_S_F8 152.14 124.4 7431200 12128000 333130 13287000 11008000 12445000 8348200 10766000 10199000 9374000 10442000 6921700 11321000 976660 13460000 10509000 12692000 8664400 10989000 10303000 9212500 10065000 2 2 2 2 2 2 2 2 2 2 2 4043000 6639400 267870 7182300 7785000 9669900 5408600 5891500 5559500 4998200 5613400 3766400 6197300 637250 7326000 7421100 9612700 5615100 6154000 5651200 4918300 5413400 1 1 1 1 1 1 1 1 1 1 1 3388200 5488700 65252 6104600 3223300 2775200 2939700 4874400 4639300 4375800 4828400 3155300 5123800 339410 6134400 3087500 3079700 3049300 4835100 4652000 4294200 4652000 1 1 1 1 1 1 1 1 1 1 1 870380000 525060000 345330000 10964 644 10177 57346;57347;57348;57349 69542;69543;69544;69545 69545 4 LAILYAK Unmodified 790.49528 0.49527576 1137 P50502;Q8IZP2;Q8NFI4 ST13;ST13P4;ST13P5 Hsc70-interacting protein;Putative protein FAM10A4;Putative protein FAM10A5 yes no 0 0 0 0 By MS/MS By MS/MS 3.14 0.833 2 2 3 4 3 62.632 62.355 2 0.0025901 22166 20211116_3441_TMUAki_TMT10x_S_F3 124.12 68.729 43514000 72495000 133210 79692000 70970000 64851000 47274000 49782000 47481000 41818000 56440000 40515000 67673000 3952600 80569000 67452000 66643000 49198000 51137000 48612000 41169000 54168000 4 4 2 4 4 4 4 4 4 4 4 23491000 36797000 68492 40321000 49312000 49826000 30022000 27169000 25481000 22334000 28683000 21872000 34348000 2271600 41028000 46796000 49664000 31321000 28622000 26235000 22012000 27570000 2 2 1 2 2 2 2 2 2 2 2 20023000 35698000 64718 39371000 21658000 15025000 17252000 22613000 22000000 19483000 27756000 18643000 33324000 1681000 39541000 20656000 16979000 17877000 22514000 22377000 19157000 26597000 2 2 1 2 2 2 2 2 2 2 2 1884700000 980960000 903720000 10965 1137 10178 57350;57351;57352;57353;57354;57355;57356 69546;69547;69548;69549;69550;69551 69551 6 LAIQGPEDSPSR Unmodified 1268.6361 0.63607935 1828 Q15773 MLF2 Myeloid leukemia factor 2 yes yes 0 0 0 0 By MS/MS 3 0 1 1 39.146 39.188 2 4.4217E-13 11608 20211116_3430_TMUAki_TMT10x_P_F3 179.42 145.42 256970 379040 1928.9 491850 830810 551300 336270 244810 326330 245360 350870 239270 354110 29351 494690 784190 551070 366640 264390 333290 239610 337710 2 2 1 2 2 2 2 2 2 2 2 256970 379040 1928.9 491850 830810 551300 336270 244810 326330 245360 350870 239270 354110 29351 494690 784190 551070 366640 264390 333290 239610 337710 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6747600 6747600 0 10966 1828 10179 57357 69552;69553 69552 2 LAKPLSSLTPLIMAAK Oxidation (M) 1668.9848 0.98481421 1606 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes yes 0 0 1 1 By MS/MS 5.5 0.5 1 1 2 72.376 72.375 3 1.1313E-05 23807 20211116_3433_TMUAki_TMT10x_P_F5 98.676 81.598 11431000 18839000 9168 14123000 12896000 26527000 14894000 15784000 18568000 17472000 15193000 10643000 17561000 936630 14926000 12414000 26017000 15117000 16641000 18609000 16994000 14761000 3 3 1 3 3 3 3 3 3 3 3 11431000 18839000 9168 14123000 12896000 26527000 14894000 15784000 18568000 17472000 15193000 10643000 17561000 936630 14926000 12414000 26017000 15117000 16641000 18609000 16994000 14761000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1828300000 1828300000 0 10967 1606 10180 57358;57359 69554;69555;69556 69554 2157 3 LAKPLSSLTPLIMAAK Unmodified 1652.9899 0.98989959 1606 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 77.292 77.36 3 4.7321E-15 26747 20211116_3435_TMUAki_TMT10x_P_F7 148.33 136.54 16355000 27371000 39611 24101000 18233000 20948000 20569000 11818000 10870000 13069000 18742000 15229000 25528000 1384100 24771000 17542000 21330000 20442000 12514000 11762000 12713000 17836000 3 3 2 3 3 3 3 3 3 3 3 9377800 15624000 39611 13756000 10436000 15049000 12518000 7552400 6517600 7855000 10854000 8731900 14572000 829220 14185000 10061000 15082000 12403000 8066100 7047000 7659100 10336000 2 2 2 2 2 2 2 2 2 2 2 6977700 11746000 0 10345000 7797100 5899900 8051000 4265800 4352100 5214300 7888300 6496600 10955000 554910 10586000 7480300 6247900 8038700 4448100 4714900 5053500 7500000 1 1 0 1 1 1 1 1 1 1 1 1632600000 894420000 738150000 10968 1606 10180 57360;57361 69557;69558;69559 69557 3 LALADAGDTVEDANFVEAMADAGILR Oxidation (M) 2663.2749 0.27486082 3064 Q9P2J5;Q9P2J5-2;Q9P2J5-3 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 79.144 79.122 3 1.217E-17 25930 20211116_3428_TMUAki_TMT10x_P_F1 131.77 119.09 5640000 9857400 0 9348700 6633600 9337700 6991400 6597500 6433500 6566300 7456400 5251000 9196100 429290 9573000 6366200 9451700 7055700 6845200 6605700 6414300 7161300 3 3 0 3 3 3 3 3 3 3 3 3698100 6424900 0 5577700 3779000 6954600 4246600 4393600 4450600 4206000 4769000 3442900 5992000 256420 5770600 3631900 6942400 4289300 4590800 4530100 4115500 4590700 2 2 0 2 2 2 2 2 2 2 2 1942000 3432400 0 3771000 2854600 2383100 2744800 2203900 1982900 2360300 2687400 1808200 3204100 172880 3802400 2734300 2509400 2766300 2254500 2075600 2298800 2570600 1 1 0 1 1 1 1 1 1 1 1 2069000000 851750000 1217200000 10969 3064 10181 57362;57363 69560;69561;69562 69560 3109 3 LALADAGDTVEDANFVEAMADAGILR Unmodified 2647.2799 0.27994619 3064 Q9P2J5;Q9P2J5-2;Q9P2J5-3 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 2.88 1.36 2 1 2 2 1 4 4 81.895 81.883 3 2.5557E-61 28990 20211116_3439_TMUAki_TMT10x_S_F1 227.38 202.79 10013000 15591000 154600 14833000 10267000 14248000 11755000 8287800 7875200 9975100 12425000 9323700 14545000 949850 15177000 9889300 14417000 11725000 8777800 8342900 9672700 11846000 9 9 6 9 9 9 9 9 9 9 9 5818000 8451900 68524 8219600 4802600 9274400 6099000 4236900 4071900 5302400 7113700 5417500 7885600 504750 8417600 4639900 9269900 6055900 4593900 4339100 5134700 6768200 5 5 3 5 5 5 5 5 5 5 5 4194700 7138900 86073 6613500 5464300 4973800 5655500 4051000 3803300 4672700 5311800 3906300 6659400 445100 6759400 5249400 5147400 5669300 4183900 4003800 4538000 5077400 4 4 3 4 4 4 4 4 4 4 4 3600200000 2753400000 846800000 10970 3064 10181 57364;57365;57366;57367;57368;57369;57370;57371 69563;69564;69565;69566;69567;69568;69569;69570 69568 8 LALDDGATNNVAHEFVEK Unmodified 1941.9432 0.94321999 3367 yes yes 0 0 0 0 By MS/MS 4 0 1 1 59.994 59.883 4 0.07435 18916 20211116_3442_TMUAki_TMT10x_S_F4 33.308 29.206 + 3024200 4932600 35800 7340200 130750 0 6031100 0 0 0 2824700 2816100 4611700 243570 7208400 275870 0 5614300 0 118190 0 2629300 1 1 1 1 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3024200 4932600 35800 7340200 130750 0 6031100 0 0 0 2824700 2816100 4611700 243570 7208400 275870 0 5614300 0 118190 0 2629300 1 1 1 1 1 0 1 0 0 0 1 879920000 0 879920000 10971 3367 10182 57372 69571 69571 1 LALDGQNIYNACCTLR Unmodified 1880.8873 0.88730179 3152;3153 Q9UKA9;Q9UKA9-5;Q9UKA9-2;Q9UKA9-3;Q9UKA9-6;Q9UKA9-4 PTBP2 Polypyrimidine tract-binding protein 2 no no 0 0 0 0 By MS/MS 7 0 1 1 61.544 62.036 3 0.07053 20724 20211116_3446_TMUAki_TMT10x_S_F7 36.504 29.583 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10972 3152;3153 10183 57373 69572 69572 1 LALDMEINAYRK Oxidation (M) 1451.7442 0.74424959 1505 Q03252 LMNB2 Lamin-B2 yes yes 0 0 1 1 By MS/MS By MS/MS 6.2 0.748 1 2 2 2 3 52.144 52.467 3 3.2208E-05 16854 20211116_3446_TMUAki_TMT10x_S_F7 99.752 85.594 20353000 33804000 349930 36056000 32312000 39919000 23703000 36709000 36433000 30978000 31745000 18953000 31551000 2181000 36681000 30787000 40356000 24887000 37313000 36341000 30491000 30768000 5 5 5 5 5 5 5 5 5 5 5 12196000 19982000 171420 21538000 24639000 31896000 16493000 21586000 21386000 18160000 18571000 11357000 18651000 1345200 22017000 23431000 31623000 17307000 22365000 21442000 17877000 18002000 3 3 3 3 3 3 3 3 3 3 3 8157100 13822000 178510 14517000 7673100 8022700 7210600 15123000 15047000 12818000 13174000 7596400 12900000 835870 14664000 7356500 8733200 7580800 14949000 14899000 12614000 12767000 2 2 2 2 2 2 2 2 2 2 2 1883900000 1017600000 866390000 10973 1505 10184 57374;57375;57376;57377;57378 69573;69574;69575;69576;69577 69577 2041 5 LALDMEISAYR Oxidation (M) 1296.6384 0.63838754 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 1 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 58.186 58.14 2 1.8753E-06 18141 20211116_3442_TMUAki_TMT10x_S_F4 133.99 119.84 18410000 31739000 626630 30308000 24178000 36839000 22637000 36295000 36192000 33422000 29763000 17145000 29610000 2151900 31118000 23179000 37114000 23462000 36844000 35998000 32760000 28910000 6 6 5 6 6 6 6 6 6 6 6 8816500 14353000 221450 14323000 13154000 24196000 12030000 16663000 16659000 15930000 13338000 8210700 13393000 998070 14762000 12598000 23871000 12405000 17300000 16627000 15588000 12969000 3 3 3 3 3 3 3 3 3 3 3 9593100 17386000 405180 15984000 11024000 12643000 10607000 19633000 19533000 17492000 16425000 8934800 16218000 1153800 16356000 10582000 13243000 11057000 19544000 19371000 17172000 15941000 3 3 2 3 3 3 3 3 3 3 3 4027300000 2177100000 1850100000 10974 748 10185 57379;57380;57381;57382;57383;57384 69578;69579;69580;69581;69582;69583 69582 860 6 LALDMEISAYRK Oxidation (M) 1424.7334 0.73335055 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 1 1 By MS/MS By MS/MS 6 1.22 1 2 2 2 1 4 4 52.456 52.69 3 2.9135E-05 14588 20211116_3434_TMUAki_TMT10x_P_F6 100.04 63.734 77464000 122970000 331940 127960000 121060000 159150000 84498000 148290000 156640000 130710000 124470000 72123000 114770000 6607000 130650000 115130000 159970000 89855000 150800000 155060000 128380000 121070000 9 9 2 9 9 9 9 9 9 9 9 48008000 75364000 0 75845000 88188000 125850000 58181000 87501000 94998000 77867000 74603000 44695000 70324000 3935700 78088000 83765000 124260000 61724000 90612000 94309000 76446000 72598000 5 5 0 5 5 5 5 5 5 5 5 29456000 47610000 331940 52113000 32867000 33306000 26317000 60793000 61647000 52845000 49869000 27428000 44442000 2671300 52564000 31362000 35707000 28131000 60185000 60751000 51938000 48472000 4 4 2 4 4 4 4 4 4 4 4 12486000000 6603400000 5882700000 10975 748 10186 57385;57386;57387;57388;57389;57390;57391;57392 69584;69585;69586;69587;69588;69589;69590;69591;69592 69587 860 9 LALDMEISAYRK Unmodified 1408.7384 0.73843593 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 1 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 59.221 59.845 3 7.4675E-07 19857 20211116_3446_TMUAki_TMT10x_S_F7 120.87 94.933 15384000 23726000 758410 28268000 22188000 23021000 19455000 16728000 14917000 15981000 20340000 14330000 22156000 2077600 28439000 21252000 23635000 19737000 17304000 15567000 15638000 19453000 2 2 2 2 2 2 2 2 2 2 2 7483300 11216000 331720 13332000 12515000 15343000 10568000 8844500 7752600 8223400 9903700 6970100 10473000 1000000 13482000 11971000 15360000 10734000 9301900 8086400 8057000 9487100 1 1 1 1 1 1 1 1 1 1 1 7901000 12510000 426680 14935000 9673200 7678600 8887200 7883900 7164900 7757300 10436000 7359800 11682000 1077500 14957000 9281200 8274600 9002500 8001700 7480500 7581400 9966000 1 1 1 1 1 1 1 1 1 1 1 884530000 537510000 347020000 10976 748 10186 57393;57394;57395 69593;69594;69595 69595 3 LALDYGIK Unmodified 891.50657 0.50656873 1284 P61006;P61006-2 RAB8A Ras-related protein Rab-8A yes no 0 0 0 0 By MS/MS 7 0 1 1 59.472 59.978 2 0.0039765 19896 20211116_3446_TMUAki_TMT10x_S_F7 95.531 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10977 1284 10187 57396 69596 69596 1 LALEELR Unmodified 842.48617 0.48616764 2577 Q99496;Q99496-2 RNF2 E3 ubiquitin-protein ligase RING2 yes no 0 0 0 0 By MS/MS 3 0 1 1 51.581 51.214 2 0.030973 17631 20211116_3441_TMUAki_TMT10x_S_F3 79.451 5.4763 1460100 2388200 571.89 2700200 1410500 1301900 1361200 1859500 1983800 1792600 2087900 1359500 2229600 120890 2711700 1351300 1425000 1402600 1860500 1994700 1753500 2010900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1460100 2388200 571.89 2700200 1410500 1301900 1361200 1859500 1983800 1792600 2087900 1359500 2229600 120890 2711700 1351300 1425000 1402600 1860500 1994700 1753500 2010900 1 1 1 1 1 1 1 1 1 1 1 34407000 0 34407000 10978 2577 10188 57397 69597 69597 1 LALELPDVTKEDLAIQK Unmodified 1895.0615 0.061544209 2568 Q96TC7;Q96TC7-2 RMDN3 Regulator of microtubule dynamics protein 3 yes no 0 0 0 1 By MS/MS By MS/MS 6.6 0.49 2 3 2 3 76.404 76.431 3 1.3339E-05 26737 20211116_3446_TMUAki_TMT10x_S_F7 86.367 68.878 10011000 16329000 99665 15726000 11389000 16943000 11729000 9837000 10862000 11028000 12704000 9321700 15234000 942140 16104000 10935000 17025000 11852000 10396000 11153000 10722000 12198000 2 2 2 2 2 2 2 2 2 2 2 6336800 10042000 85240 9686900 6262800 12362000 6981000 5753300 6971200 6757900 7444000 5900800 9368700 603770 9947300 6028300 12280000 7043300 6213100 7109200 6558700 7166300 1 1 1 1 1 1 1 1 1 1 1 3673900 6286800 14425 6039300 5125900 4580800 4747500 4083700 3890600 4270500 5259500 3420900 5865300 338370 6156700 4906300 4745400 4808900 4182700 4044000 4163100 5031300 1 1 1 1 1 1 1 1 1 1 1 1745000000 896930000 848060000 10979 2568 10189 57398;57399;57400;57401;57402 69598;69599;69600 69600 3 LALENYITALQAVPPRPR Unmodified 2021.1422 0.14219457 499 P05067;P05067-4;P05067-8;P05067-10;P05067-3;P05067-5;P05067-6;P05067-7;P05067-11;P05067-9 APP Amyloid beta A4 protein;N-APP;Soluble APP-alpha;Soluble APP-beta;C99;Beta-amyloid protein 42;Beta-amyloid protein 40;C83;P3(42);P3(40);C80;Gamma-secretase C-terminal fragment 59;Gamma-secretase C-terminal fragment 57;Gamma-secretase C-terminal fragment 50;C31 yes no 0 0 0 1 By MS/MS 5 0 1 1 75.791 75.802 3 7.7095E-06 24050 20211116_3444_TMUAki_TMT10x_S_F5 89.489 66.263 10391000 16337000 89369 19710000 11499000 8902100 11149000 6806800 7607900 8522700 12365000 9675300 15257000 862880 19707000 11016000 9688500 11217000 7077800 8063500 8253000 11781000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10391000 16337000 89369 19710000 11499000 8902100 11149000 6806800 7607900 8522700 12365000 9675300 15257000 862880 19707000 11016000 9688500 11217000 7077800 8063500 8253000 11781000 2 2 1 2 2 2 2 2 2 2 2 247920000 0 247920000 10980 499 10190 57403 69601;69602 69601 2 LALEQQQLICK Unmodified 1342.7279 0.72787125 2149 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein yes yes 0 0 0 0 By MS/MS 7 0 1 1 58.326 58.841 3 0.00095849 19456 20211116_3446_TMUAki_TMT10x_S_F7 78.653 56.455 3085800 5656900 45292 5769500 3808600 3588900 3013600 4499700 4468800 4405800 4741500 2873500 5278900 308170 5845300 3634600 3811100 3143500 4526200 4492200 4306800 4565500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3085800 5656900 45292 5769500 3808600 3588900 3013600 4499700 4468800 4405800 4741500 2873500 5278900 308170 5845300 3634600 3811100 3143500 4526200 4492200 4306800 4565500 1 1 1 1 1 1 1 1 1 1 1 229510000 0 229510000 10981 2149 10191 57404 69603 69603 1 LALFGEHVGALR Unmodified 1281.7194 0.71935547 2708 Q9BWH6;Q9BWH6-2;Q9BWH6-3 RPAP1 RNA polymerase II-associated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 57.59 57.439 3 5.9854E-17 19168 20211116_3439_TMUAki_TMT10x_S_F1 208.03 171.61 2399500 3806400 0 3975100 2889200 3614900 2661200 2592500 2487100 2522400 2873100 2233900 3552400 173440 4038000 2762400 3681900 2705900 2685400 2551500 2466400 2759700 2 2 0 2 2 2 2 2 2 2 2 1501000 2245200 0 2319100 2011100 2827100 1710300 1487400 1426400 1466400 1674900 1397400 2095300 113920 2368200 1919600 2818700 1741700 1579300 1472300 1433100 1608000 1 1 0 1 1 1 1 1 1 1 1 898460 1561200 0 1656000 878090 787770 950940 1105100 1060700 1056000 1198200 836430 1457100 59516 1669700 842830 863220 964170 1106100 1079100 1033400 1151600 1 1 0 1 1 1 1 1 1 1 1 399480000 277780000 121700000 10982 2708 10192 57405;57406 69604;69605 69605 2 LALGGCTNRPFYR Unmodified 1523.7667 0.76671637 3277 Q9Y3D3;Q9Y3D3-2 MRPS16 28S ribosomal protein S16, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 43.487 43.645 3 2.2103E-09 12181 20211116_3442_TMUAki_TMT10x_S_F4 133.48 89.487 5256000 8732600 234600 10824000 8613800 10549000 6415300 5148800 4832600 4721100 6272900 4895600 8156300 701430 10891000 8218200 10643000 6573300 5494700 5036700 4628500 6006600 2 2 2 2 2 2 2 2 2 2 2 3811100 6324000 232680 7775500 7231900 9374700 5345100 3996700 3739500 3660600 4560400 3550200 5906400 580730 7853700 6900900 9330800 5470700 4324900 3903700 3589000 4373800 1 1 1 1 1 1 1 1 1 1 1 1444900 2408600 1919.7 3048900 1381900 1174800 1070300 1152000 1093100 1060400 1712500 1345400 2249900 120700 3037100 1317300 1311900 1102600 1169700 1133100 1039400 1632800 1 1 1 1 1 1 1 1 1 1 1 288790000 199560000 89229000 10983 3277 10193 57407;57408 69606;69607 69607 2 LALGIPLPELR Unmodified 1190.7387 0.73869393 831 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 0 0 0 0 By matching By MS/MS 2 0 2 1 1 78.359 78.319 2 1.8591E-06 25810 20211116_3440_TMUAki_TMT10x_S_F2 130.75 97.627 3692600 6028100 58020 5814500 4576300 4499200 4613300 3561800 3460300 3993600 4268600 3438600 5624100 372590 5927100 4392400 4643500 4641900 3681600 3599400 3882500 4092800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3692600 6028100 58020 5814500 4576300 4499200 4613300 3561800 3460300 3993600 4268600 3438600 5624100 372590 5927100 4392400 4643500 4641900 3681600 3599400 3882500 4092800 1 1 1 1 1 1 1 1 1 1 1 1009400000 449460000 559920000 10984 831 10194 57409;57410 69608 69608 1 LALGSFVEEYNNK Unmodified 1482.7355 0.73545904 1325 P61962;P61962-2 DCAF7 DDB1- and CUL4-associated factor 7 yes no 0 0 0 0 By MS/MS By MS/MS 6.29 0.881 2 1 4 2 5 72.204 72.327 2;3 5.9145E-93 25020 20211116_3446_TMUAki_TMT10x_S_F7 358.12 304.36 26465000 42999000 390210 41088000 29463000 37280000 30257000 26096000 23502000 25464000 30023000 24645000 40116000 2599800 41994000 28294000 37962000 30440000 27078000 24437000 24895000 28760000 7 7 7 7 7 7 7 7 7 7 7 12021000 18872000 280370 18041000 12031000 21450000 13768000 11214000 10254000 11280000 13548000 11195000 17606000 1258100 18514000 11596000 21412000 13766000 11921000 10703000 11014000 12967000 3 3 3 3 3 3 3 3 3 3 3 14444000 24127000 109840 23047000 17432000 15830000 16488000 14882000 13248000 14184000 16475000 13450000 22509000 1341700 23480000 16697000 16550000 16674000 15158000 13734000 13882000 15793000 4 4 4 4 4 4 4 4 4 4 4 2791200000 786350000 2004800000 10985 1325 10195 57411;57412;57413;57414;57415;57416;57417 69609;69610;69611;69612;69613;69614;69615;69616 69615 8 LALHNFG Unmodified 770.40752 0.40752338 1328 P61970 NUTF2 Nuclear transport factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.83 1.07 1 1 2 2 3 3 45.82 46.081 2 0.039443 12164 20211116_3445_TMUAki_TMT10x_S_F6 74.849 62.36 7163600 10811000 16312 11894000 9567600 8921200 6987700 8860000 9132900 8163400 9813500 6669400 10092000 555460 12013000 9104300 9270300 7289300 8990500 9221400 8001500 9445600 5 5 2 5 5 5 5 5 5 5 5 2549500 3801900 0 4278600 5426500 5441100 3099000 2928200 3061000 2641400 3379100 2373600 3549300 221960 4348600 5142700 5414800 3264000 3095400 3127000 2591600 3249900 2 2 0 2 2 2 2 2 2 2 2 4614100 7008900 16312 7615300 4141200 3480100 3888700 5931800 6071900 5522000 6434300 4295800 6542300 333500 7664200 3961700 3855500 4025300 5895100 6094500 5410000 6195700 3 3 2 3 3 3 3 3 3 3 3 2285500000 1251300000 1034100000 10986 1328 10196 57418;57419;57420;57421;57422;57423 69617;69618;69619;69620;69621 69620 5 LALHSGMDYAIMTGGDVAPMGR 3 Oxidation (M) 2310.0443 0.044272715 2973;1941 Q9NVI7;Q9NVI7-2;Q9NVI7-3;Q5T9A4;Q5T9A4-3 ATAD3A;ATAD3B ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B no no 0 0 3 0 By MS/MS 5 0 1 1 46.38 46.538 3 0.0067697 13243 20211116_3433_TMUAki_TMT10x_P_F5 44.047 40.206 665480 1496600 14799 1268100 1544600 2943700 1261000 2527500 2172300 1715000 1496500 619740 1395700 81277 1334900 1474800 2886200 1322200 2566500 2146000 1708400 1464500 1 1 1 1 1 1 1 1 1 1 1 665480 1496600 14799 1268100 1544600 2943700 1261000 2527500 2172300 1715000 1496500 619740 1395700 81277 1334900 1474800 2886200 1322200 2566500 2146000 1708400 1464500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 314760000 314760000 0 10987 2973;1941 10197 57424 69622 69622 2526;2527;2528 1 LALIAPK Unmodified 724.48471 0.48471107 212 O43395;O43395-3 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 56.012 55.905 2 0.0057633 16867 20211116_3440_TMUAki_TMT10x_S_F2 106.84 53.371 4290800 7437200 31669 6706300 4100500 4404200 4269200 5242700 4726700 5105500 5429500 3995400 6937000 382590 6858700 3937900 4647500 4335800 5284000 4813500 4992000 5215900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4290800 7437200 31669 6706300 4100500 4404200 4269200 5242700 4726700 5105500 5429500 3995400 6937000 382590 6858700 3937900 4647500 4335800 5284000 4813500 4992000 5215900 1 1 1 1 1 1 1 1 1 1 1 364660000 104290000 260370000 10988 212 10198 57425;57426;57427 69623;69624 69624 2 LALLEPVFPIACHR Unmodified 1634.8967 0.89666791 2583 Q99549;Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 76.382 76.246 3 2.5939E-14 26723 20211116_3430_TMUAki_TMT10x_P_F3 138.42 119.8 1652400 2811000 0 2851300 1712600 1752900 2119800 1191700 1159200 1318300 1778400 1538300 2623100 103230 2889500 1650100 1840900 2099200 1243700 1243300 1282300 1696400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1652400 2811000 0 2851300 1712600 1752900 2119800 1191700 1159200 1318300 1778400 1538300 2623100 103230 2889500 1650100 1840900 2099200 1243700 1243300 1282300 1696400 1 1 0 1 1 1 1 1 1 1 1 480820000 0 480820000 10989 2583 10199 57428;57429 69625;69626 69625 2 LALLHEGTGPR Unmodified 1162.6459 0.64585618 3219 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 6.38 0.857 1 4 2 1 4 4 36.824 37.021 2;3 1.7036E-08 11027 20211116_3435_TMUAki_TMT10x_P_F7 148.19 113.04 5887100 8658000 9191.9 9060400 8402100 8993900 6304800 5528300 6143300 5603800 6911800 5480500 8080300 405950 9213700 7996000 9088600 6499900 5798000 6284100 5469900 6643700 6 6 2 6 6 6 6 6 6 6 6 4612200 6617300 0 6955500 7208000 7856600 4963400 4150800 4736400 4319300 5297700 4293500 6175900 297040 7085300 6847100 7864900 5145000 4412300 4848400 4211500 5093100 3 3 0 3 3 3 3 3 3 3 3 1274900 2040700 9191.9 2104900 1194100 1137300 1341400 1377600 1406800 1284600 1614100 1187000 1904400 108910 2128300 1148900 1223700 1355000 1385700 1435700 1258400 1550600 3 3 2 3 3 3 3 3 3 3 3 1364200000 1040600000 323590000 10990 3219 10200 57430;57431;57432;57433;57434;57435;57436;57437 69627;69628;69629;69630;69631;69632;69633 69630 7 LALPGHAESYNPPPEYLLSEEER Unmodified 2610.2602 0.26019703 1679 Q14137;Q14137-2 BOP1 Ribosome biogenesis protein BOP1 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 63.311 63.397 3 3.9548E-09 19883 20211116_3431_TMUAki_TMT10x_P_F4 104.18 97.07 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10991 1679 10201 57438;57439 69634;69635 69634 2 LALQALTEK Unmodified 985.5808 0.5807963 1536 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 61.354 61.818 2 1.979E-05 18420 20211116_3447_TMUAki_TMT10x_S_F8 146.27 103.44 19120000 30427000 32180 32449000 29003000 32927000 20930000 24606000 23144000 22685000 25647000 17803000 28399000 1752900 32967000 27608000 33328000 21721000 25380000 23537000 22234000 24663000 3 3 2 3 3 3 3 3 3 3 3 12506000 19165000 32180 20477000 21750000 26583000 14505000 15663000 14765000 14730000 15926000 11644000 17888000 1196300 20888000 20675000 26459000 15100000 16449000 15051000 14424000 15327000 2 2 2 2 2 2 2 2 2 2 2 6614800 11262000 0 11972000 7253200 6344100 6425300 8942200 8378400 7954900 9720700 6159000 10511000 556630 12079000 6933800 6868500 6621200 8931200 8485700 7809800 9335700 1 1 0 1 1 1 1 1 1 1 1 1146800000 817260000 329560000 10992 1536 10202 57440;57441;57442;57443 69636;69637;69638;69639 69639 4 LALSVGTDK Unmodified 902.5073 0.50729701 2988 Q9NWT1 PAK1IP1 p21-activated protein kinase-interacting protein 1 yes yes 0 0 0 0 By MS/MS 5 0 1 1 50.076 50.267 2 0.0072253 14750 20211116_3433_TMUAki_TMT10x_P_F5 68.224 37.505 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10993 2988 10203 57444 69640 69640 1 LALVTGGEIASTFDHPELVK Unmodified 2096.1154 0.11537069 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 6.38 1.81 1 1 1 4 3 4 12 13 29 10 66.8 66.822 3;4 5.8158E-59 24596 20211116_3434_TMUAki_TMT10x_P_F6 247.4 215.58 311040000 510100000 3605900 476520000 359780000 461910000 360780000 290530000 284170000 331940000 370270000 289610000 475850000 26516000 488290000 345000000 467610000 363530000 305280000 295500000 322480000 354520000 36 36 25 36 36 36 36 36 36 36 36 148080000 239550000 2075600 231060000 147960000 281640000 165140000 144780000 141510000 156620000 176430000 137880000 223490000 13117000 237080000 142360000 280720000 165880000 154470000 146240000 152480000 169110000 23 23 16 23 23 23 23 23 23 23 23 162970000 270550000 1530300 245460000 211820000 180270000 195640000 145750000 142660000 175310000 193840000 151730000 252360000 13399000 251210000 202640000 186900000 197650000 150820000 149260000 170000000 185410000 13 13 9 13 13 13 13 13 13 13 13 79756000000 39935000000 39820000000 10994 1429 10204 57445;57446;57447;57448;57449;57450;57451;57452;57453;57454;57455;57456;57457;57458;57459;57460;57461;57462;57463;57464;57465;57466;57467;57468;57469;57470;57471;57472;57473;57474;57475;57476;57477;57478;57479;57480;57481;57482;57483 69641;69642;69643;69644;69645;69646;69647;69648;69649;69650;69651;69652;69653;69654;69655;69656;69657;69658;69659;69660;69661;69662;69663;69664;69665;69666;69667;69668;69669;69670;69671;69672;69673;69674;69675;69676;69677;69678;69679;69680;69681;69682;69683 69646 43 LAMQEFMILPVGAANFR 2 Oxidation (M) 1938.9696 0.96957485 520 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 2 0 By MS/MS By MS/MS 3.19 2.18 7 14 14 4 4 29 14 44.408 44.332 2;3 9.4994E-12 26545 20211116_3435_TMUAki_TMT10x_P_F7 139.31 129.12 77341000 126000000 968330 106520000 83238000 135100000 88983000 92768000 89759000 94960000 94412000 72016000 117500000 6399400 110470000 79988000 134920000 89983000 96522000 91445000 92652000 90932000 43 43 20 43 43 43 43 43 43 43 43 41855000 69038000 241640 58710000 40629000 92042000 45389000 51250000 49757000 53094000 49875000 38971000 64381000 2800500 61121000 39072000 90793000 45927000 54222000 50432000 51778000 48109000 31 31 12 31 31 31 31 31 31 31 31 35486000 56965000 726690 47807000 42609000 43059000 43593000 41518000 40002000 41866000 44537000 33045000 53120000 3598800 49347000 40917000 44124000 44056000 42301000 41013000 40874000 42823000 12 12 8 12 12 12 12 12 12 12 12 50118000000 26015000000 24103000000 10995 520 10205 57484;57485;57486;57487;57488;57489;57490;57491;57492;57493;57494;57495;57496;57497;57498;57499;57500;57501;57502;57503;57504;57505;57506;57507;57508;57509;57510;57511;57512;57513;57514;57515;57516;57517;57518;57519;57520;57521;57522;57523;57524;57525;57526 69684;69685;69686;69687;69688;69689;69690;69691;69692;69693;69694;69695;69696;69697;69698;69699;69700;69701;69702;69703;69704;69705;69706;69707;69708;69709;69710;69711;69712;69713;69714;69715;69716;69717;69718;69719;69720;69721;69722;69723;69724;69725;69726;69727;69728;69729;69730 69715 430;431 47 LAMQEFMILPVGAANFR Oxidation (M) 1922.9747 0.97466023 520 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 1 0 By MS/MS By MS/MS 2.79 1.63 4 9 12 1 2 10 18 71.955 71.905 2;3 2.0514E-35 27206 20211116_3429_TMUAki_TMT10x_P_F2 206.36 177.6 66652000 109530000 140870 107320000 80116000 76399000 88762000 35881000 27612000 42977000 77607000 62057000 102200000 5391900 109180000 77015000 78827000 87690000 38739000 32540000 41681000 73317000 21 21 8 21 21 21 21 21 21 21 21 25778000 41219000 19583 40381000 28282000 37079000 31987000 9906900 8144300 14338000 27959000 24001000 38459000 2112000 41205000 27207000 37367000 31514000 11577000 10032000 13821000 26357000 6 6 2 6 6 6 6 6 6 6 6 40874000 68311000 121290 66940000 51834000 39320000 56775000 25974000 19467000 28639000 49648000 38056000 63737000 3280000 67973000 49808000 41461000 56176000 27162000 22508000 27860000 46960000 15 15 6 15 15 15 15 15 15 15 15 45457000000 23455000000 22003000000 10996 520 10205 57527;57528;57529;57530;57531;57532;57533;57534;57535;57536;57537;57538;57539;57540;57541;57542;57543;57544;57545;57546;57547;57548;57549;57550;57551;57552;57553;57554 69731;69732;69733;69734;69735;69736;69737;69738;69739;69740;69741;69742;69743;69744;69745;69746;69747;69748;69749;69750;69751;69752;69753;69754 69733 430;431 24 LAMQEFMILPVGAANFR Unmodified 1906.9797 0.97974561 520 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 0 By MS/MS By MS/MS 3.12 0.758 4 7 6 10 7 81.326 81.303 2;3 1.825E-93 28444 20211116_3430_TMUAki_TMT10x_P_F3 345.85 271.58 133680000 204240000 238170 236120000 128810000 133420000 156640000 53103000 45609000 66733000 128980000 124450000 190690000 9023900 237090000 124080000 140450000 153990000 58453000 54216000 64613000 121840000 15 15 5 15 15 15 15 15 15 15 15 79922000 116950000 113170 131870000 75538000 99824000 91796000 36013000 31950000 45213000 75905000 74401000 109190000 4762700 133000000 72721000 102240000 90410000 40111000 36682000 43779000 71862000 8 8 3 8 8 8 8 8 8 8 8 53758000 87282000 125000 104240000 53272000 33596000 64844000 17091000 13659000 21519000 53072000 50053000 81507000 4261200 104090000 51359000 38212000 63585000 18342000 17534000 20835000 49976000 7 7 2 7 7 7 7 7 7 7 7 45746000000 23035000000 22711000000 10997 520 10205 57555;57556;57557;57558;57559;57560;57561;57562;57563;57564;57565;57566;57567;57568;57569;57570;57571 69755;69756;69757;69758;69759;69760;69761;69762;69763;69764;69765;69766;69767;69768;69769;69770;69771;69772;69773 69758 19 LANILFTQELAR Unmodified 1387.7823 0.78234966 2270 Q8TC12;Q8TC12-2 RDH11 Retinol dehydrogenase 11 yes no 0 0 0 0 By MS/MS 2 0 1 1 77.061 77.02 2 7.6375E-05 25259 20211116_3440_TMUAki_TMT10x_S_F2 90.05 58.116 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10998 2270 10206 57572 69774 69774 1 LANQAADYFGDAFK Unmodified 1529.7151 0.71505795 2301 Q8WUM4;Q8WUM4-2;Q8WUM4-3 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 By MS/MS By MS/MS 5.88 0.781 3 3 2 3 5 73.735 73.799 2;3 9.5451E-20 23634 20211116_3445_TMUAki_TMT10x_S_F6 159.5 141.51 59318000 104790000 648030 95210000 72798000 97828000 74522000 73159000 61772000 78373000 79507000 55231000 97748000 5069800 97846000 69843000 98945000 75106000 75784000 64030000 76328000 76149000 13 13 6 13 13 13 13 13 13 13 13 28297000 45932000 484260 42080000 30028000 57881000 34644000 32170000 28876000 34054000 34806000 26349000 42845000 2640300 43436000 28926000 57413000 34721000 34062000 29840000 33182000 33393000 6 6 3 6 6 6 6 6 6 6 6 31022000 58862000 163770 53130000 42770000 39947000 39878000 40989000 32896000 44319000 44701000 28882000 54903000 2429400 54409000 40917000 41532000 40385000 41722000 34190000 43147000 42756000 7 7 3 7 7 7 7 7 7 7 7 3663200000 2040600000 1622600000 10999 2301 10207 57573;57574;57575;57576;57577;57578;57579;57580 69775;69776;69777;69778;69779;69780;69781;69782;69783;69784;69785;69786;69787;69788;69789 69786 15 LANRAPEPTPQQVAQQQ Unmodified 1874.9599 0.9598731 1735 Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 37.121 37.177 3 2.2787E-29 9547 20211116_3433_TMUAki_TMT10x_P_F5 189.1 181.81 1367500 2015200 5635.2 2764200 3897500 3565500 1993300 2243500 2708200 1618100 2302700 1273300 1883200 96756 2779000 3689400 3553100 2143600 2329100 2709400 1606100 2233900 4 4 2 4 4 4 4 4 4 4 4 1201800 1707500 3763.7 2384300 3759900 3459000 1871700 1937700 2349500 1402800 1970200 1119000 1595800 81669 2400700 3557700 3423300 2012100 2030900 2355900 1392100 1912400 3 3 1 3 3 3 3 3 3 3 3 165680 307670 1871.5 379840 137590 106450 121560 305790 358640 215370 332420 154280 287360 15087 378320 131630 129790 131490 298140 353550 214070 321490 1 1 1 1 1 1 1 1 1 1 1 415270000 320140000 95137000 11000 1735 10208 57581;57582;57583 69790;69791;69792;69793 69792 4 LAPASNMTSQRPVSSTGINFDNPSVQK Oxidation (M) 2861.3978 0.39776992 2865 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 yes yes 0 0 1 1 By matching By MS/MS 1 0 2 1 1 50.112 49.981 4 1.3608E-24 16051 20211116_3439_TMUAki_TMT10x_S_F1 149.99 130 890580 1692000 0 1906600 590710 800160 480270 1835000 2177400 1454500 1467400 829090 1579600 53099 1913300 562550 906650 545470 1802100 2115700 1436200 1437500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 890580 1692000 0 1906600 590710 800160 480270 1835000 2177400 1454500 1467400 829090 1579600 53099 1913300 562550 906650 545470 1802100 2115700 1436200 1437500 1 1 0 1 1 1 1 1 1 1 1 917160000 598560000 318600000 11001 2865 10209 57584;57585 69794 69794 2988 1 LAPDYDALDVANK Unmodified 1403.6933 0.69325988 1364 P62750 RPL23A 60S ribosomal protein L23a yes yes 0 0 0 0 By MS/MS By MS/MS 4.32 1.34 2 4 4 4 5 9 10 63.02 62.962 2;3 6.1959E-36 21357 20211116_3430_TMUAki_TMT10x_P_F3 267.39 220.68 108340000 186840000 713420 205700000 132490000 174570000 115900000 147670000 162850000 136230000 153250000 100880000 174410000 9558300 208050000 126630000 179160000 119890000 151150000 163280000 133520000 148130000 15 15 9 15 15 15 15 15 15 15 15 53537000 90017000 293080 93021000 96132000 128010000 76247000 71060000 76497000 64003000 71992000 49849000 84007000 5197400 95208000 91686000 126970000 78388000 74911000 77652000 62799000 69587000 8 8 6 8 8 8 8 8 8 8 8 54801000 96820000 420340 112680000 36354000 46559000 39657000 76609000 86356000 72229000 81258000 51026000 90402000 4360900 112840000 34946000 52185000 41499000 76243000 85628000 70723000 78545000 7 7 3 7 7 7 7 7 7 7 7 20357000000 12830000000 7526300000 11002 1364 10210 57586;57587;57588;57589;57590;57591;57592;57593;57594;57595;57596;57597;57598;57599;57600;57601;57602;57603;57604 69795;69796;69797;69798;69799;69800;69801;69802;69803;69804;69805;69806;69807;69808;69809;69810;69811;69812;69813;69814 69797 20 LAPEFAK Unmodified 774.42759 0.42759012 859 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 0 0 By MS/MS By MS/MS 5.25 0.829 1 1 2 2 2 48.92 49.066 2 0.0095333 13162 20211116_3444_TMUAki_TMT10x_S_F5 99.139 33.002 30671000 48509000 440860 55870000 36985000 36779000 33124000 28536000 30289000 29532000 39791000 28561000 45292000 3003500 56191000 35390000 38460000 33713000 29459000 31275000 28801000 38091000 5 5 4 5 5 5 5 5 5 5 5 10003000 14692000 108490 17775000 18772000 19344000 12428000 9384500 9889800 9212700 12730000 9315000 13721000 1053300 17939000 17846000 19386000 12860000 10039000 10273000 9004600 12193000 2 2 2 2 2 2 2 2 2 2 2 20668000 33817000 332360 38095000 18213000 17435000 20696000 19151000 20399000 20319000 27061000 19246000 31571000 1950300 38252000 17544000 19075000 20854000 19420000 21002000 19797000 25899000 3 3 2 3 3 3 3 3 3 3 3 1395200000 705120000 690030000 11003 859 10211 57605;57606;57607;57608 69815;69816;69817;69818;69819 69818 5 LAPEYEAAATR Unmodified 1190.5932 0.5931519 868 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 By MS/MS By MS/MS 2.75 0.968 1 2 3 2 5 3 38.619 38.626 2 3.216E-14 12849 20211116_3441_TMUAki_TMT10x_S_F3 182.16 153 4011900 6655700 41575 6904200 11596000 11224000 6342900 11625000 11068000 7499500 8848100 3735600 6211400 450630 7090400 10988000 11177000 6854800 11676000 10974000 7494400 8604200 10 10 4 10 10 10 10 10 10 10 10 2074900 3305600 14631 3693600 8239300 8140500 3901000 5775400 5924300 3742600 4675700 1931800 3086000 245090 3807100 7790600 7965600 4246400 5930500 5894100 3739000 4549100 7 7 2 7 7 7 7 7 7 7 7 1937100 3350100 26943 3210600 3356800 3083800 2441900 5849900 5143700 3756900 4172400 1803800 3125500 205540 3283300 3197300 3211500 2608400 5745600 5080100 3755400 4055100 3 3 2 3 3 3 3 3 3 3 3 623240000 321210000 302030000 11004 868 10212 57609;57610;57611;57612;57613;57614;57615;57616 69820;69821;69822;69823;69824;69825;69826;69827;69828;69829;69830 69829 11 LAPGGHVGR Unmodified 862.47733 0.47733428 953 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 0 0 By MS/MS 4.67 0.471 1 2 3 26.061 26.031 2;3 2.1718E-05 5489 20211116_3433_TMUAki_TMT10x_P_F5 147.08 116.47 865450 1344000 7518.7 1109700 890480 1246100 831250 626360 581390 654620 971640 805870 1253200 77918 1150700 852720 1247100 838530 668960 616250 638170 925220 3 3 2 3 3 3 3 3 3 3 3 865450 1344000 7518.7 1109700 890480 1246100 831250 626360 581390 654620 971640 805870 1253200 77918 1150700 852720 1247100 838530 668960 616250 638170 925220 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 62653000 62653000 0 11005 953 10213 57617;57618;57619 69831;69832;69833 69832 3 LAPILCDGTATFVDLVPGFR Unmodified 2161.1242 0.12416124 206 O43264;O43264-2 ZW10 Centromere/kinetochore protein zw10 homolog yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 81.828 81.826 3 6.1087E-16 27203 20211116_3440_TMUAki_TMT10x_S_F2 126.19 109.3 491530 792840 35492 926960 507600 915500 519450 522110 552630 586770 700240 457930 740300 74054 936010 489160 924520 527310 552630 565990 570410 670930 1 1 1 1 1 1 1 1 1 1 1 491530 792840 35492 926960 507600 915500 519450 522110 552630 586770 700240 457930 740300 74054 936010 489160 924520 527310 552630 565990 570410 670930 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 313060000 313060000 0 11006 206 10214 57620;57621 69834;69835 69835 2 LAPITSDPTEATAVGAVEASFK Unmodified 2174.1107 0.11067925 670 P14618;P14618-3 PKM Pyruvate kinase PKM yes no 0 0 0 0 By MS/MS By MS/MS 5.5 1.61 2 6 14 16 35 30 48 8 85 74 58.526 58.571 2;3;4 2.5323E-128 26424 20211116_3442_TMUAki_TMT10x_S_F4 355.74 314.34 529020000 899290000 3427200 848420000 602670000 743660000 610210000 493760000 416420000 500240000 631800000 492550000 838950000 39062000 867550000 577910000 758440000 612570000 514820000 439760000 488290000 602810000 159 159 79 159 159 159 159 159 159 159 159 267490000 431920000 1351300 415920000 244070000 468600000 300820000 249310000 205110000 246050000 304150000 249040000 402970000 18505000 426230000 235340000 469200000 299210000 264450000 216370000 240440000 290330000 95 95 41 95 95 95 95 95 95 95 95 261530000 467370000 2075900 432500000 358600000 275060000 309390000 244450000 211310000 254190000 327650000 243500000 435980000 20557000 441330000 342570000 289240000 313360000 250370000 223390000 247860000 312470000 64 64 38 64 64 64 64 64 64 64 64 265140000000 130110000000 135040000000 11007 670 10215 57622;57623;57624;57625;57626;57627;57628;57629;57630;57631;57632;57633;57634;57635;57636;57637;57638;57639;57640;57641;57642;57643;57644;57645;57646;57647;57648;57649;57650;57651;57652;57653;57654;57655;57656;57657;57658;57659;57660;57661;57662;57663;57664;57665;57666;57667;57668;57669;57670;57671;57672;57673;57674;57675;57676;57677;57678;57679;57680;57681;57682;57683;57684;57685;57686;57687;57688;57689;57690;57691;57692;57693;57694;57695;57696;57697;57698;57699;57700;57701;57702;57703;57704;57705;57706;57707;57708;57709;57710;57711;57712;57713;57714;57715;57716;57717;57718;57719;57720;57721;57722;57723;57724;57725;57726;57727;57728;57729;57730;57731;57732;57733;57734;57735;57736;57737;57738;57739;57740;57741;57742;57743;57744;57745;57746;57747;57748;57749;57750;57751;57752;57753;57754;57755;57756;57757;57758;57759;57760;57761;57762;57763;57764;57765;57766;57767;57768;57769;57770;57771;57772;57773;57774;57775;57776;57777;57778;57779;57780 69836;69837;69838;69839;69840;69841;69842;69843;69844;69845;69846;69847;69848;69849;69850;69851;69852;69853;69854;69855;69856;69857;69858;69859;69860;69861;69862;69863;69864;69865;69866;69867;69868;69869;69870;69871;69872;69873;69874;69875;69876;69877;69878;69879;69880;69881;69882;69883;69884;69885;69886;69887;69888;69889;69890;69891;69892;69893;69894;69895;69896;69897;69898;69899;69900;69901;69902;69903;69904;69905;69906;69907;69908;69909;69910;69911;69912;69913;69914;69915;69916;69917;69918;69919;69920;69921;69922;69923;69924;69925;69926;69927;69928;69929;69930;69931;69932;69933;69934;69935;69936;69937;69938;69939;69940;69941;69942;69943;69944;69945;69946;69947;69948;69949;69950;69951;69952;69953;69954;69955;69956;69957;69958;69959;69960;69961;69962;69963;69964;69965;69966;69967;69968;69969;69970;69971;69972;69973;69974;69975;69976;69977;69978;69979;69980;69981;69982;69983;69984;69985;69986;69987;69988;69989;69990;69991;69992;69993;69994;69995;69996;69997;69998;69999;70000;70001;70002;70003;70004;70005;70006;70007;70008;70009;70010;70011;70012;70013;70014;70015;70016;70017;70018;70019;70020 69958 185 LAPPLVTLLSGEPEVQYVALR Unmodified 2264.278 0.27801935 1391 P63010;P63010-2;P63010-3 AP2B1 AP-2 complex subunit beta yes no 0 0 0 0 By MS/MS By matching 8 0 2 1 1 81.419 81.42 3 1.6463E-26 26974 20211116_3436_TMUAki_TMT10x_P_F8 169.28 159.14 2365900 3908800 201830 3950000 2134700 4066900 3153700 2510200 2471200 2524900 3541200 2204400 3647500 381010 4028500 2084700 4100900 3124500 2631200 2581900 2465300 3382900 2 2 2 2 2 2 2 2 2 2 2 2365900 3908800 201830 3950000 2134700 4066900 3153700 2510200 2471200 2524900 3541200 2204400 3647500 381010 4028500 2084700 4100900 3124500 2631200 2581900 2465300 3382900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 408010000 318220000 89791000 11008 1391 10216 57781;57782 70021;70022 70021 2 LAPVPFFSLLQYE Unmodified 1522.8072 0.80716742 541 P07741 APRT Adenine phosphoribosyltransferase yes yes 0 0 0 0 By MS/MS By MS/MS 4.37 2.64 3 4 2 2 2 2 4 10 9 85.148 85.147 2;3 5.4925E-09 29805 20211116_3429_TMUAki_TMT10x_P_F2 131.06 121.94 10697000 18604000 133990 17002000 13489000 16983000 13686000 11698000 11505000 11660000 13847000 9959900 17354000 936440 17458000 12941000 17183000 13805000 12159000 11883000 11389000 13285000 23 23 15 23 23 23 23 23 23 23 23 5717700 9793100 80689 8879200 6278000 11353000 7348700 6310700 6241800 6227200 7154800 5323800 9134600 490830 9159800 6047100 11300000 7363900 6668200 6430800 6085200 6873700 12 12 8 12 12 12 12 12 12 12 12 4978800 8811400 53305 8123000 7210600 5630000 6337700 5387300 5263100 5432900 6692100 4636000 8219400 445620 8298200 6894300 5883800 6441000 5491000 5452000 5304200 6411400 11 11 7 11 11 11 11 11 11 11 11 5468200000 3238400000 2229800000 11009 541 10217 57783;57784;57785;57786;57787;57788;57789;57790;57791;57792;57793;57794;57795;57796;57797;57798;57799;57800;57801 70023;70024;70025;70026;70027;70028;70029;70030;70031;70032;70033;70034;70035;70036;70037;70038;70039;70040;70041;70042;70043;70044;70045;70046 70025 24 LAQAAQSSVATITR Unmodified 1415.7732 0.77324153 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 50.063 49.932 2;3 1.6229E-23 13957 20211116_3428_TMUAki_TMT10x_P_F1 170.66 108.11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11010 3293 10218 57802;57803 70047;70048 70047 2 LAQAEAAGLHK Unmodified 1107.6037 0.60365701 1500 Q02880;Q02880-2 TOP2B DNA topoisomerase 2-beta yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 39.09 39.222 3 0.00033743 9233 20211116_3444_TMUAki_TMT10x_S_F5 82.362 55.764 861510 1389500 0 1445500 1009500 754130 1004700 1169300 1065600 954810 1189200 802060 1296800 62253 1460400 967060 820240 1021300 1161500 1085800 941350 1143300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 861510 1389500 0 1445500 1009500 754130 1004700 1169300 1065600 954810 1189200 802060 1296800 62253 1460400 967060 820240 1021300 1161500 1085800 941350 1143300 1 1 0 1 1 1 1 1 1 1 1 53464000 0 53464000 11011 1500 10219 57804;57805 70049;70050 70050 2 LAQALHEMR Oxidation (M) 1083.5495 0.54951295 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 1 0 By MS/MS 3.67 1.25 1 1 1 3 32.285 32.2 3 0.0031954 7556 20211116_3433_TMUAki_TMT10x_P_F5 72.275 62.86 2178900 3347700 167540 3389600 2894700 4075200 2552100 2177400 2170000 2127700 2863800 2030100 3123900 346810 3465300 2777100 4066600 2594800 2308100 2248900 2080000 2741100 2 2 2 2 2 2 2 2 2 2 2 2178900 3347700 167540 3389600 2894700 4075200 2552100 2177400 2170000 2127700 2863800 2030100 3123900 346810 3465300 2777100 4066600 2594800 2308100 2248900 2080000 2741100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 309320000 309320000 0 11012 748 10220 57806;57807;57808 70051;70052 70052 861 2 LAQALHEMR Unmodified 1067.5546 0.55459833 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 By MS/MS By MS/MS 6 0.707 1 2 1 3 1 39.412 39.575 3 0.00016399 9272 20211116_3434_TMUAki_TMT10x_P_F6 122.44 98.288 4597200 6971300 0 7217600 8055000 7708700 4946100 4172000 4112500 4072600 5154600 4280100 6505900 391060 7353100 7642800 7743300 5153800 4417300 4257200 3981600 4940200 4 4 0 4 4 4 4 4 4 4 4 4325800 6585800 0 6768000 7819800 7536100 4719300 3947500 3925700 3813400 4826800 4027400 6145900 371250 6903100 7417700 7549300 4924600 4190700 4060400 3729900 4628400 3 3 0 3 3 3 3 3 3 3 3 271410 385500 0 449590 235180 172580 226740 224460 186820 259190 327790 252690 359950 19813 449990 225150 194060 229200 226630 196810 251710 311850 1 1 0 1 1 1 1 1 1 1 1 293620000 219100000 74527000 11013 748 10220 57809;57810;57811;57812 70053;70054;70055;70056 70054 4 LAQALHEMREQHDAQVR Oxidation (M) 2047.0018 0.0017546946 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 1 1 By MS/MS 4.5 0.5 3 3 6 30.284 30.269 3;4;5 1.145E-10 6807 20211116_3433_TMUAki_TMT10x_P_F5 122.46 103.68 1905600 2941800 30898 3090900 4074500 3825300 2313600 2363500 2514500 2142300 2530600 1774400 2745600 206610 3153700 3863700 3818800 2445100 2470200 2549900 2101400 2440700 9 9 5 9 9 9 9 9 9 9 9 1905600 2941800 30898 3090900 4074500 3825300 2313600 2363500 2514500 2142300 2530600 1774400 2745600 206610 3153700 3863700 3818800 2445100 2470200 2549900 2101400 2440700 9 9 5 9 9 9 9 9 9 9 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 419280000 419280000 0 11014 748 10221 57813;57814;57815;57816;57817;57818 70057;70058;70059;70060;70061;70062;70063;70064;70065 70063 861 9 LAQALHEMREQHDAQVR Unmodified 2031.0068 0.0068400725 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 1 By MS/MS 6 0 2 2 38.169 38.168 4;5 1.3666E-11 8677 20211116_3434_TMUAki_TMT10x_P_F6 139 126.17 439550 707400 17935 978490 1107300 1008600 622930 514000 493910 451730 598220 409400 661090 62509 979520 1050600 1014600 653190 545700 511810 443750 573850 2 2 2 2 2 2 2 2 2 2 2 439550 707400 17935 978490 1107300 1008600 622930 514000 493910 451730 598220 409400 661090 62509 979520 1050600 1014600 653190 545700 511810 443750 573850 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 79795000 79795000 0 11015 748 10221 57819;57820 70066;70067 70066 2 LAQANGWGVMVSHR Oxidation (M) 1540.7569 0.75687996 520 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 1 0 By MS/MS By MS/MS 3.38 2.5 2 2 2 1 1 4 4 41.619 41.508 3 2.8853E-09 10632 20211116_3428_TMUAki_TMT10x_P_F1 123.95 97.588 7336300 11157000 83121 12905000 16302000 13505000 9036500 6863100 7907700 6711400 9709300 6830100 10417000 644650 13051000 15443000 13572000 9511100 7308600 8158000 6561000 9310500 8 8 4 8 8 8 8 8 8 8 8 5491900 8091300 65880 9248100 14765000 12105000 7576900 4643400 5426300 4715100 7022100 5112700 7554300 484630 9395600 13970000 11988000 7994900 5099800 5671100 4602100 6724600 5 5 2 5 5 5 5 5 5 5 5 1844400 3066000 17241 3656700 1537100 1400700 1459600 2219700 2481400 1996300 2687200 1717400 2863100 160020 3655000 1472600 1584500 1516200 2208800 2487000 1958900 2585900 3 3 2 3 3 3 3 3 3 3 3 2189000000 1460000000 728960000 11016 520 10222 57821;57822;57823;57824;57825;57826;57827;57828 70068;70069;70070;70071;70072;70073;70074;70075;70076;70077 70068 432 10 LAQANGWGVMVSHR Unmodified 1524.762 0.76196534 520 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 48.903 48.709 3 4.0302E-19 15476 20211116_3430_TMUAki_TMT10x_P_F3 167.05 151.67 7563200 12634000 11808 14292000 12300000 9446000 8682900 7692500 7156000 6404900 10654000 7041600 11795000 631900 14391000 11699000 9882500 8949300 7871200 7471000 6308400 10170000 5 5 1 5 5 5 5 5 5 5 5 3662600 5722900 0 6650400 8573600 6605300 5398500 3424200 3141500 2869900 4980800 3409700 5343500 313330 6718300 8137100 6660300 5572100 3625400 3360000 2825700 4747900 2 2 0 2 2 2 2 2 2 2 2 3900700 6911500 11808 7641800 3726400 2840700 3284400 4268300 4014500 3535000 5673600 3631900 6451900 318570 7672600 3561700 3222200 3377200 4245800 4111000 3482700 5421800 3 3 1 3 3 3 3 3 3 3 3 2455400000 1493800000 961570000 11017 520 10222 57829;57830;57831;57832 70078;70079;70080;70081;70082 70079 5 LAQDFLDSQNLSAYNTR Unmodified 1954.9385 0.93846896 3013 Q9NY33;Q9NY33-4 DPP3 Dipeptidyl peptidase 3 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.957 1 2 2 1 4 2 71.365 71.441 3 3.7173E-08 22236 20211116_3434_TMUAki_TMT10x_P_F6 116.61 86.881 26137000 42194000 284750 42426000 28112000 43900000 30022000 27467000 24325000 27233000 31891000 24338000 39372000 2136300 43287000 27014000 44262000 30176000 28749000 25264000 26607000 30529000 11 11 7 11 11 11 11 11 11 11 11 19742000 31237000 197630 31004000 19985000 36626000 22329000 20629000 17959000 20162000 23403000 18383000 29146000 1534600 31729000 19230000 36606000 22391000 21767000 18655000 19710000 22408000 8 8 5 8 8 8 8 8 8 8 8 6395400 10957000 87126 11422000 8126900 7273500 7693100 6838100 6365900 7071200 8487100 5955100 10226000 601710 11558000 7784600 7655900 7785100 6981500 6609500 6896500 8121600 3 3 2 3 3 3 3 3 3 3 3 3283600000 2372800000 910730000 11018 3013 10223 57833;57834;57835;57836;57837;57838 70083;70084;70085;70086;70087;70088;70089;70090;70091;70092;70093;70094 70088 12 LAQEGIYTLYPFINSR Unmodified 1883.9781 0.97814893 1552 Q08J23;Q08J23-2;Q08J23-3 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 3.5 2.6 3 1 3 1 78.79 78.77 2;3 9.7762E-29 27252 20211116_3429_TMUAki_TMT10x_P_F2 188.4 165.16 9866600 16284000 78317 14649000 9924500 15940000 11635000 9195300 9124500 10097000 11052000 9186500 15189000 785810 15079000 9557000 16008000 11635000 9716500 9460900 9823900 10602000 4 4 1 4 4 4 4 4 4 4 4 7691200 12879000 0 11684000 7580500 13455000 8780500 7250500 7246100 7908800 8457300 7160400 12013000 530100 12030000 7291800 13459000 8796200 7704600 7481800 7697100 8121000 3 3 0 3 3 3 3 3 3 3 3 2175400 3405000 78317 2965100 2344000 2485000 2854800 1944800 1878400 2187900 2595200 2026100 3175600 255700 3048800 2265100 2549000 2838800 2011900 1979100 2126800 2481300 1 1 1 1 1 1 1 1 1 1 1 3946400000 3247800000 698570000 11019 1552 10224 57839;57840;57841;57842 70095;70096;70097;70098 70095 4 LAQENEVDFILLGGDLFHENKPSRK Unmodified 2868.477 0.47700652 1130 P49959;P49959-2;P49959-3 MRE11A Double-strand break repair protein MRE11A yes no 0 0 0 2 By MS/MS 6.5 0.5 1 1 2 74.644 74.728 5 5.4307E-12 25456 20211116_3435_TMUAki_TMT10x_P_F7 118.01 99.918 10794000 17898000 136670 14990000 10224000 20235000 11983000 10909000 11404000 11449000 12800000 10052000 16690000 1004400 15576000 9855000 20081000 12045000 11578000 11677000 11159000 12304000 3 3 2 3 3 3 3 3 3 3 3 10794000 17898000 136670 14990000 10224000 20235000 11983000 10909000 11404000 11449000 12800000 10052000 16690000 1004400 15576000 9855000 20081000 12045000 11578000 11677000 11159000 12304000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2185100000 2185100000 0 11020 1130 10225 57843;57844 70099;70100;70101 70101 3 LAQENGWGVMVSHR Unmodified 1582.7674 0.76744465 568 P09104;P09104-2 ENO2 Gamma-enolase yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 47.581 48.12 3 0.017927 14554 20211116_3435_TMUAki_TMT10x_P_F7 47.537 32.271 8990800 16273000 183860 15825000 13021000 15363000 10524000 13228000 14156000 12465000 14370000 8372700 15183000 973210 16169000 12434000 15631000 10918000 13534000 14250000 12205000 13856000 2 2 2 2 2 2 2 2 2 2 2 5433000 9666400 68246 9226300 9693300 11851000 7206200 6796500 7476400 6373500 8226600 5059100 9018100 573700 9482700 9236000 11798000 7448000 7152600 7620800 6242100 7912700 1 1 1 1 1 1 1 1 1 1 1 3557900 6606500 115620 6599200 3328100 3511700 3317700 6431400 6680000 6091200 6143800 3313600 6164500 399510 6686600 3197900 3833600 3469900 6381500 6629500 5963000 5943300 1 1 1 1 1 1 1 1 1 1 1 406790000 255930000 150850000 11021 568 10226 57845;57846 70102;70103 70102 2 LAQFEPSQR Unmodified 1074.5458 0.54580778 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 By MS/MS By MS/MS 4.4 0.49 3 2 2 3 41.728 41.805 2 1.979E-05 10166 20211116_3444_TMUAki_TMT10x_S_F5 146.27 98.526 7194600 11458000 35468 13047000 21155000 18217000 10678000 11975000 12000000 9153400 11539000 6699000 10698000 805110 13275000 20022000 18099000 11420000 12406000 12134000 9055900 11146000 3 3 2 3 3 3 3 3 3 3 3 7194600 11458000 35468 13047000 21155000 18217000 10678000 11975000 12000000 9153400 11539000 6699000 10698000 805110 13275000 20022000 18099000 11420000 12406000 12134000 9055900 11146000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 502310000 502310000 0 11022 1546 10227 57847;57848;57849;57850;57851 70104;70105;70106;70107;70108;70109 70109 6 LAQFVAR Unmodified 803.46537 0.46537261 2149 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein yes yes 0 0 0 0 By MS/MS 2 0 1 1 45.511 45.482 2 0.092542 12433 20211116_3440_TMUAki_TMT10x_S_F2 56.091 4.6344 1171600 1972800 0 1874200 1216000 1044300 1029800 1541800 1513300 1358800 1665900 1090800 1840400 95819 1906600 1161100 1126200 1069300 1537000 1523800 1334600 1602300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1171600 1972800 0 1874200 1216000 1044300 1029800 1541800 1513300 1358800 1665900 1090800 1840400 95819 1906600 1161100 1126200 1069300 1537000 1523800 1334600 1602300 1 1 0 1 1 1 1 1 1 1 1 71498000 0 71498000 11023 2149 10228 57852 70110 70110 1 LAQGLTHLGK Unmodified 1036.6029 0.60292873 1609 Q13200;Q13200-3;Q13200-2 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS 4 3.29 2 1 2 2 3 44.888 44.868 3 0.00069586 11936 20211116_3428_TMUAki_TMT10x_P_F1 83.182 52.618 7051100 11518000 161450 12758000 9718100 9852600 8068800 7238100 7579700 7131000 9178400 6566300 10752000 749770 12884000 9285100 10158000 8255600 7488000 7789200 6968900 8804600 5 5 4 5 5 5 5 5 5 5 5 3051400 5023600 62595 5456800 5974200 6219500 3832200 3084700 3294000 2984800 4030700 2841600 4689200 352250 5547700 5678300 6218600 3982500 3291600 3400800 2919300 3865400 2 2 2 2 2 2 2 2 2 2 2 3999700 6494100 98858 7301200 3744000 3633000 4236600 4153400 4285700 4146200 5147800 3724700 6062700 397520 7336600 3606800 3939000 4273100 4196400 4388400 4049600 4939200 3 3 2 3 3 3 3 3 3 3 3 633070000 356610000 276470000 11024 1609 10229 57853;57854;57855;57856;57857 70111;70112;70113;70114;70115 70111 5 LAQHITYVHQHSR Unmodified 1588.8223 0.82225741 913 P33993;P33993-3 MCM7 DNA replication licensing factor MCM7 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 3 1 2 28.672 28.726 3;4 1.3874E-06 7379 20211116_3439_TMUAki_TMT10x_S_F1 116.19 97.776 299950 473760 6467.5 417290 329510 406620 339980 297830 280690 398610 372290 279320 441860 30254 429530 316530 412450 342480 311320 291400 385150 356300 4 4 3 4 4 4 4 4 4 4 4 61798 84163 1600 71343 75126 113080 66204 47681 46790 79197 62730 57552 78485 6801.3 74311 71907 111150 67019 52722 49016 76050 60019 1 1 1 1 1 1 1 1 1 1 1 238150 389600 4867.6 345950 254380 293540 273780 250150 233900 319410 309560 221770 363370 23452 355220 244630 301290 275460 258590 242380 309100 296280 3 3 2 3 3 3 3 3 3 3 3 17931000 7772600 10158000 11025 913 10230 57858;57859;57860 70116;70117;70118;70119 70117 4 LAQIHIQQQDQCVEITEESK Unmodified 2396.1642 0.16418816 369 O75935;O75935-3 DCTN3 Dynactin subunit 3 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 52.933 52.882 3 1.9365E-24 17242 20211116_3430_TMUAki_TMT10x_P_F3 163.79 148.66 7486500 12182000 0 13261000 7824900 8369800 6719400 7813300 7380400 7746400 9493100 6969700 11371000 500030 13379000 7466900 8815800 6894000 7970100 7554300 7568300 9092200 3 3 0 3 3 3 3 3 3 3 3 1624100 2385500 0 2588100 1983200 3038200 1682900 1425000 1445500 1485500 1894500 1512100 2226700 131060 2632700 1893400 3031100 1715400 1532100 1496900 1448300 1813600 1 1 0 1 1 1 1 1 1 1 1 5862400 9796100 0 10673000 5841800 5331600 5036500 6388300 5934900 6260900 7598600 5457500 9144100 368970 10747000 5573500 5784700 5178700 6438000 6057400 6120000 7278600 2 2 0 2 2 2 2 2 2 2 2 616920000 230650000 386270000 11026 369 10231 57861;57862 70120;70121;70122 70120 3 LAQQMENRPSVQAALK Unmodified 1782.9411 0.94105192 3289 Q9Y3Y2;Q9Y3Y2-4;Q9Y3Y2-3 CHTOP Chromatin target of PRMT1 protein yes no 0 0 0 1 By MS/MS 8 0 1 1 45.541 45.482 3 2.247E-22 11801 20211116_3447_TMUAki_TMT10x_S_F8 161.19 132.89 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11027 3289 10232 57863 70123 70123 1 LAQQQAAAAAAAAAAASQQGSAK Unmodified 2054.0505 0.050479026 2741 Q9BZK7 TBL1XR1 F-box-like/WD repeat-containing protein TBL1XR1 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 58.961 58.812 3 3.8354E-05 17664 20211116_3428_TMUAki_TMT10x_P_F1 69.27 51.781 14152000 21297000 82142 19984000 15047000 17565000 14749000 14782000 13483000 13121000 19414000 13178000 19868000 1229600 20444000 14423000 17981000 14937000 15120000 13983000 12883000 18544000 3 3 2 3 3 3 3 3 3 3 3 9864000 13185000 82142 13358000 10619000 13950000 10607000 9421900 8559900 8395800 13868000 9185000 12304000 904930 13624000 10187000 14073000 10696000 9777400 8986100 8242000 13213000 2 2 2 2 2 2 2 2 2 2 2 4288300 8112400 0 6626400 4427400 3614800 4142200 5359600 4923600 4725600 5546200 3992600 7564100 324660 6819900 4235900 3907500 4240700 5342200 4996800 4641400 5331000 1 1 0 1 1 1 1 1 1 1 1 900380000 613350000 287030000 11028 2741 10233 57864;57865 70124;70125;70126 70125 3 LAQQQAALLMQQEER Oxidation (M) 1771.8887 0.888682 1633 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 1 0 By MS/MS 5 0 1 1 47.781 47.953 3 0.00042462 12821 20211116_3444_TMUAki_TMT10x_S_F5 75.968 64.863 8109600 15529000 213270 17115000 8848100 8334100 7358100 14448000 15270000 11970000 14652000 7552200 14496000 853800 17217000 8457600 9169300 7786500 14307000 15167000 11793000 14153000 4 4 3 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8109600 15529000 213270 17115000 8848100 8334100 7358100 14448000 15270000 11970000 14652000 7552200 14496000 853800 17217000 8457600 9169300 7786500 14307000 15167000 11793000 14153000 4 4 3 4 4 4 4 4 4 4 4 319190000 0 319190000 11029 1633 10234 57866 70127;70128;70129;70130 70129 2190 4 LAQQVCHAIANISDR Unmodified 1694.8522 0.85223691 1754 Q15021 NCAPD2 Condensin complex subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 56.861 57.011 3 7.5536E-28 16469 20211116_3447_TMUAki_TMT10x_S_F8 173.62 158.08 4654200 7789100 42971 8281000 7715700 11794000 6901600 7357700 6361600 6251200 6832800 4333500 7269900 437270 8465700 7378300 11699000 7026500 7671500 6512200 6150800 6576700 2 2 1 2 2 2 2 2 2 2 2 4654200 7789100 42971 8281000 7715700 11794000 6901600 7357700 6361600 6251200 6832800 4333500 7269900 437270 8465700 7378300 11699000 7026500 7671500 6512200 6150800 6576700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 468800000 468800000 0 11030 1754 10235 57867;57868 70131;70132;70133 70133 3 LAQSNGWGVMVSHR Oxidation (M) 1556.7518 0.75179458 661 P13929;P13929-3;P13929-2 ENO3 Beta-enolase yes no 0 0 1 0 By MS/MS By MS/MS 2.4 2.8 4 1 3 2 37.358 37.322 3 0.00095037 11109 20211116_3439_TMUAki_TMT10x_S_F1 71.513 58.636 1711800 2892800 36117 3221000 4154700 3859800 2493700 3265100 3744100 2788200 3163100 1594000 2700500 199680 3272300 3943500 3879300 2655000 3335400 3733700 2742700 3069300 5 5 3 5 5 5 5 5 5 5 5 1031400 1776500 32252 1930000 3554300 3220800 1790900 2081900 2425900 1762500 2003600 960490 1658300 145600 1977300 3365300 3175900 1928400 2164600 2425100 1734500 1945800 3 3 2 3 3 3 3 3 3 3 3 680410 1116200 3865.2 1291000 600370 639010 702780 1183200 1318300 1025600 1159500 633520 1042200 54075 1294900 578160 703430 726560 1170800 1308500 1008200 1123500 2 2 1 2 2 2 2 2 2 2 2 407940000 256050000 151900000 11031 661 10236 57869;57870;57871;57872;57873 70134;70135;70136;70137;70138;70139 70139 722 6 LAQYESK Unmodified 837.42323 0.42323303 792 P24534 EEF1B2 Elongation factor 1-beta yes yes 0 0 0 0 By MS/MS 5 0 1 1 38.178 38.324 2 0.064184 8863 20211116_3444_TMUAki_TMT10x_S_F5 64.265 15.168 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11032 792 10237 57874 70140 70140 1 LASAFTEEQAVLYNQR Unmodified 1838.9163 0.91627696 3116 Q9UHB9;Q9UHB9-4;Q9UHB9-2 SRP68 Signal recognition particle subunit SRP68 yes no 0 0 0 0 By MS/MS By MS/MS 4.71 0.7 3 3 1 2 5 67.146 67.144 2;3 1.8026E-66 20626 20211116_3444_TMUAki_TMT10x_S_F5 273.15 243.6 19338000 32635000 706090 33734000 24993000 33609000 22362000 24664000 23295000 23358000 27324000 18011000 30456000 2340500 34334000 23941000 34045000 22849000 25489000 23801000 22866000 26234000 6 6 6 6 6 6 6 6 6 6 6 11217000 17360000 433950 19192000 15296000 23891000 13119000 13732000 12966000 13098000 15200000 10447000 16206000 1391500 19520000 14638000 23820000 13417000 14455000 13276000 12818000 14594000 3 3 3 3 3 3 3 3 3 3 3 8120900 15275000 272140 14542000 9697800 9717700 9242300 10933000 10329000 10260000 12124000 7563400 14250000 948990 14815000 9303700 10225000 9432300 11034000 10524000 10048000 11640000 3 3 3 3 3 3 3 3 3 3 3 3004200000 1195400000 1808900000 11033 3116 10238 57875;57876;57877;57878;57879;57880;57881 70141;70142;70143;70144;70145;70146;70147;70148 70147 8 LASCDIVVDVGGEYDPRR Unmodified 2019.9684 0.96838888 2854 Q9HB07 C12orf10 UPF0160 protein MYG1, mitochondrial yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 58.123 58.154 3 3.8537E-05 18184 20211116_3442_TMUAki_TMT10x_S_F4 81.317 60.654 5273300 9600800 29036 10080000 6186200 5332900 5279400 8384300 7218200 7368100 8132900 4909900 8960300 432960 10178000 5907700 5794200 5462500 8340200 7290900 7237900 7817200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5273300 9600800 29036 10080000 6186200 5332900 5279400 8384300 7218200 7368100 8132900 4909900 8960300 432960 10178000 5907700 5794200 5462500 8340200 7290900 7237900 7817200 2 2 1 2 2 2 2 2 2 2 2 535780000 0 535780000 11034 2854 10239 57882;57883 70149;70150 70150 2 LASEAKPAAVAAENEEIGSHIK Unmodified 2234.1543 0.1542754 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.83 1.07 1 1 2 2 4 2 50.206 50.321 4 1.0562E-19 13630 20211116_3444_TMUAki_TMT10x_S_F5 153.83 131.82 19220000 31204000 654790 35939000 36717000 40146000 24505000 30523000 31061000 25945000 30176000 17900000 29134000 2439300 36392000 34938000 40423000 25698000 31383000 31281000 25528000 29137000 8 8 7 8 8 8 8 8 8 8 8 12774000 20214000 385980 24076000 31311000 34300000 19371000 20760000 20981000 18038000 19895000 11897000 18876000 1669000 24442000 29745000 34007000 20323000 21709000 21236000 17729000 19226000 5 5 4 5 5 5 5 5 5 5 5 6445400 10990000 268810 11863000 5405600 5846700 5134700 9763000 10079000 7906900 10281000 6003300 10258000 770330 11951000 5192600 6415300 5375600 9673100 10045000 7798700 9911300 3 3 3 3 3 3 3 3 3 3 3 2149400000 1634600000 514760000 11035 3293 10240 57884;57885;57886;57887;57888;57889 70151;70152;70153;70154;70155;70156;70157;70158 70156 8 LASEEPPDDEEALATIR Unmodified 1854.8847 0.88470206 3073 Q9UBB4;Q9UBB4-2 ATXN10 Ataxin-10 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 57.665 57.514 2 9.4132E-81 17077 20211116_3428_TMUAki_TMT10x_P_F1 328.81 299.91 5740100 9192600 19075 10307000 7245400 9738600 6620800 5808300 6199600 5916000 6952400 5344200 8581800 448350 10428000 6928400 9867800 6735400 6107100 6352100 5773500 6683400 4 4 2 4 4 4 4 4 4 4 4 3452900 5349500 0 6054100 5127300 7720100 4744900 3410300 3542500 3462800 4015400 3214500 4994300 243320 6151300 4902400 7665100 4795700 3686400 3673300 3379800 3858900 2 2 0 2 2 2 2 2 2 2 2 2287100 3843100 19075 4253200 2118100 2018500 1875900 2398000 2657100 2453200 2936900 2129700 3587500 205030 4276600 2026000 2202700 1939700 2420600 2678900 2393700 2824500 2 2 2 2 2 2 2 2 2 2 2 422020000 230530000 191500000 11036 3073 10241 57890;57891 70159;70160;70161;70162 70159 4 LASEIPVLEEFPLVPICVADK Unmodified 2338.2494 0.24942133 1540 Q07864 POLE DNA polymerase epsilon catalytic subunit A yes yes 0 0 0 0 By MS/MS 4 0 1 1 82.231 82.239 3 3.4108E-05 27598 20211116_3431_TMUAki_TMT10x_P_F4 74.047 63.99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11037 1540 10242 57892 70163 70163 1 LASGETVAAFCLTEPSSGSDAASIR Unmodified 2496.1802 0.18023215 1115 P49748;P49748-2;P49748-3 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 68.55 68.501 3 5.3003E-09 21113 20211116_3444_TMUAki_TMT10x_S_F5 97.542 78.234 6611000 11477000 68983 11212000 9619600 8264300 7492800 7088800 6445900 6777600 8537400 6156000 10708000 650360 11413000 9174200 8574600 7679100 7257500 6677600 6632200 8170900 3 3 2 3 3 3 3 3 3 3 3 2185500 3617400 0 3670500 2127400 3585800 2722800 2120600 1972500 2083100 2634000 2034900 3375700 176210 3739500 2054600 3625300 2707500 2228900 2063000 2036000 2520500 1 1 0 1 1 1 1 1 1 1 1 4425500 7859400 68983 7542000 7492200 4678500 4770000 4968200 4473400 4694500 5903300 4121100 7332400 474150 7673700 7119600 4949300 4971600 5028500 4614600 4596200 5650500 2 2 2 2 2 2 2 2 2 2 2 1092800000 545100000 547700000 11038 1115 10243 57893;57894;57895 70164;70165;70166;70167 70167 4 LASHLNLAMCHLK Oxidation (M) 1522.7748 0.77483821 1497 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 0 0 1 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 42.327 42.219 4 5.9095E-12 12443 20211116_3429_TMUAki_TMT10x_P_F2 152.4 136.26 3046700 4911900 120810 5539200 8988700 8114500 4183800 5995500 5247000 4361800 5155000 2837700 4585700 447970 5645100 8505300 8060100 4527900 6153900 5288200 4327300 4975700 6 6 5 6 6 6 6 6 6 6 6 2383100 3778400 117650 4381100 8251100 7538000 3595200 4795700 4178800 3449700 4079800 2219800 3527900 389410 4474100 7801700 7422800 3908300 4974000 4222200 3424700 3938700 4 4 4 4 4 4 4 4 4 4 4 663560 1133400 3159.6 1158100 737540 576580 588580 1199800 1068200 912080 1075200 617860 1057700 58561 1171000 703610 637250 619660 1179800 1066000 902640 1037000 2 2 1 2 2 2 2 2 2 2 2 600480000 477940000 122540000 11039 1497 10244 57896;57897;57898;57899 70168;70169;70170;70171;70172;70173 70170 2030 6 LASHLNLAMCHLK Unmodified 1506.7799 0.77992359 1497 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 3 2 1 48.534 48.384 3;4 1.04E-09 15353 20211116_3430_TMUAki_TMT10x_P_F3 136.99 112.2 5624200 9325100 152230 10292000 10924000 10280000 7117000 6788000 6220500 6102300 8107900 5237800 8704900 682390 10431000 10388000 10395000 7390400 7057200 6434500 5988100 7762900 4 4 4 4 4 4 4 4 4 4 4 3803600 6261200 148040 6691600 8943200 9231300 5785600 5252600 4955300 4561600 5633100 3542700 5844000 525300 6834100 8504700 9158100 6008000 5520600 5101600 4483600 5413100 3 3 3 3 3 3 3 3 3 3 3 1820600 3063900 4188 3600700 1981100 1048400 1331400 1535400 1265200 1540700 2474800 1695200 2860900 157090 3597200 1883500 1236400 1382400 1536600 1332900 1504500 2349900 1 1 1 1 1 1 1 1 1 1 1 844680000 692770000 151910000 11040 1497 10244 57900;57901;57902 70174;70175;70176;70177 70176 4 LASIFSGTGADPVVSAK Unmodified 1618.8566 0.85663681 89 O00451;O00451-3 GFRA2 GDNF family receptor alpha-2 yes no 0 0 0 0 By MS/MS By MS/MS 5.88 2.85 2 3 3 4 4 73.158 73.167 2;3 3.6758E-53 23066 20211116_3447_TMUAki_TMT10x_S_F8 273.27 220.48 46485000 78038000 1044100 77124000 56838000 70237000 53456000 48055000 45090000 47874000 57848000 43290000 72814000 4902000 78641000 54472000 71479000 54140000 49973000 46690000 46764000 55409000 10 10 9 10 10 10 10 10 10 10 10 25680000 40907000 571970 42338000 27980000 46636000 31452000 25174000 24128000 25611000 29931000 23914000 38175000 2694300 43155000 26950000 46762000 31495000 26692000 25072000 24995000 28694000 5 5 5 5 5 5 5 5 5 5 5 20806000 37131000 472130 34786000 28858000 23601000 22003000 22881000 20962000 22263000 27917000 19375000 34638000 2207700 35485000 27522000 24717000 22645000 23281000 21618000 21769000 26715000 5 5 4 5 5 5 5 5 5 5 5 6638500000 3509900000 3128600000 11041 89 10245 57903;57904;57905;57906;57907;57908;57909;57910 70178;70179;70180;70181;70182;70183;70184;70185;70186;70187;70188 70188 11 LASIVEQVSVLQNQGR Unmodified 1739.953 0.95299681 1229 P54886;P54886-2 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes no 0 0 0 0 By MS/MS By MS/MS 2.2 0.4 4 1 3 2 77.585 77.547 2;3 9.7811E-43 26764 20211116_3429_TMUAki_TMT10x_P_F2 231.67 194.33 11760000 21014000 145000 19792000 14522000 17897000 15847000 11543000 11147000 12983000 14573000 10949000 19603000 968890 20249000 13955000 18206000 15860000 12100000 11668000 12620000 13952000 3 3 2 3 3 3 3 3 3 3 3 4330700 8396300 139410 7874700 5353400 9482600 6624800 4519800 4875300 5738800 5762200 4033300 7832700 503290 8094400 5173500 9449500 6599200 4882400 5067800 5554600 5531100 1 1 1 1 1 1 1 1 1 1 1 7429300 12617000 5593 11917000 9168600 8414500 9222600 7022800 6272200 7244100 8810400 6916000 11771000 465600 12155000 8781300 8756900 9260800 7217100 6600000 7065800 8420500 2 2 1 2 2 2 2 2 2 2 2 3384000000 875730000 2508200000 11042 1229 10246 57911;57912;57913;57914;57915 70189;70190;70191;70192;70193 70189 5 LASLFSSLEPQIQPVYVPVPK Unmodified 2311.2828 0.28277037 1017 P42696;P42696-2 RBM34 RNA-binding protein 34 yes no 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 81.365 81.343 3 1.8612E-07 28778 20211116_3430_TMUAki_TMT10x_P_F3 90.654 80.458 1171100 1761100 8260.5 1907000 1030800 1946000 1341700 1130500 1182600 1222000 1465000 1090500 1643800 102820 1935700 996690 1961700 1339800 1193300 1220100 1189700 1404500 1 1 1 1 1 1 1 1 1 1 1 1171100 1761100 8260.5 1907000 1030800 1946000 1341700 1130500 1182600 1222000 1465000 1090500 1643800 102820 1935700 996690 1961700 1339800 1193300 1220100 1189700 1404500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1161400000 1161400000 0 11043 1017 10247 57916;57917 70194 70194 1 LASPSGSTSSGLEVVAPEGTSAPGGGPGTLDDSATICR Unmodified 3557.6791 0.67914932 1615 Q13263;Q13263-2 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 0 By MS/MS By MS/MS 4.25 0.829 1 1 2 2 2 65.852 65.803 4 7.6583E-25 23539 20211116_3441_TMUAki_TMT10x_S_F3 139 135.81 3052700 4686800 956.6 4812100 3572000 5573900 3370800 3210600 3102400 3418900 3940400 2842200 4373700 140220 4911700 3418700 5578200 3421400 3389800 3197700 3330500 3775200 3 3 1 3 3 3 3 3 3 3 3 2526700 3674600 0 3865100 2852900 4997200 2807800 2584500 2533900 2700800 3177100 2352400 3429500 93020 3946500 2733100 4966800 2841900 2753000 2612600 2633000 3044900 2 2 0 2 2 2 2 2 2 2 2 526000 1012200 956.6 946970 719100 576710 563030 626030 568580 718090 763300 489760 944210 47205 965130 685650 611460 579440 636770 585100 697530 730300 1 1 1 1 1 1 1 1 1 1 1 4506100000 3262900000 1243200000 11044 1615 10248 57918;57919;57920;57921 70195;70196;70197 70197 3 LASQANIAQVLAELK Unmodified 1567.8934 0.89335667 1391;1557 P63010;P63010-2;P63010-3;Q10567;Q10567-3;Q10567-2;Q10567-4 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 no no 0 0 0 0 By MS/MS By MS/MS 3.56 3.17 4 2 3 5 4 79.552 79.537 2;3 4.0041E-34 26111 20211116_3428_TMUAki_TMT10x_P_F1 236.42 202.55 21091000 34460000 222840 32958000 20468000 27319000 24260000 14149000 13923000 17121000 23005000 19638000 32149000 1798800 33645000 19725000 27883000 24090000 15139000 14939000 16599000 21911000 6 6 4 6 6 6 6 6 6 6 6 11512000 18668000 15124 17790000 10568000 18018000 12229000 7964900 7639900 9761800 12294000 10718000 17416000 806660 18214000 10166000 18115000 12175000 8659300 8138200 9459900 11716000 3 3 1 3 3 3 3 3 3 3 3 9578100 15792000 207710 15169000 9899900 9301400 12031000 6183900 6282700 7359200 10711000 8919700 14733000 992180 15431000 9558600 9767500 11914000 6479900 6800300 7138900 10195000 3 3 3 3 3 3 3 3 3 3 3 3828100000 1962300000 1865800000 11045 1391;1557 10249 57922;57923;57924;57925;57926;57927;57928;57929;57930 70198;70199;70200;70201;70202;70203;70204;70205 70198 8 LASQGDSISSQLGPIHPPPR Unmodified 2056.0702 0.070151836 2380 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 48.785 49.339 3 1.5278E-41 14999 20211116_3435_TMUAki_TMT10x_P_F7 203.89 168.85 4358700 7400600 60274 7728000 6747100 9667500 5419600 7033400 7183700 6409900 6557800 4058900 6906800 450990 7889700 6439700 9669700 5621400 7265300 7208800 6286000 6345400 4 4 4 4 4 4 4 4 4 4 4 3374900 5674500 53415 5867500 5836100 8712200 4636400 5486100 5630300 4878000 5073600 3142700 5295600 364050 6014800 5569000 8627400 4796400 5722500 5664700 4789100 4911500 3 3 3 3 3 3 3 3 3 3 3 983890 1726100 6858.5 1860500 911040 955290 783170 1547200 1553400 1532000 1484200 916150 1611200 86942 1875000 870740 1042300 824930 1542800 1544100 1496800 1433900 1 1 1 1 1 1 1 1 1 1 1 1163200000 704430000 458810000 11046 2380 10250 57931;57932;57933 70206;70207;70208;70209;70210 70208 5 LASRPTRPPEPR Unmodified 1375.7684 0.76843093 2013 Q6PKG0;Q6PKG0-3 LARP1 La-related protein 1 yes no 0 0 0 2 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 27.278 27.017 3;4 0.00039616 7901 20211116_3441_TMUAki_TMT10x_S_F3 85.554 50.594 702820 817750 333.86 882780 581620 761670 526200 393700 234530 382420 450820 654370 763290 16863 894170 556030 775140 527620 418520 241210 373960 428200 4 4 1 4 4 4 4 4 3 4 4 608790 672250 0 744730 475450 663950 412210 320360 153240 290910 334150 566810 627550 8586 753420 454010 673650 413410 342180 155820 285340 316740 3 3 0 3 3 3 3 3 2 3 3 94033 145500 333.86 138040 106170 97720 113990 73335 81289 91508 116670 87557 135740 8277.2 140750 102020 101490 114210 76337 85385 88623 111450 1 1 1 1 1 1 1 1 1 1 1 59108000 47791000 11318000 11047 2013 10251 57934;57935;57936;57937 70211;70212 70212 2 LASSVLR Unmodified 744.44939 0.4493882 1456 P84098 RPL19 60S ribosomal protein L19 yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 37.849 38.013 2 0.052321 10830 20211116_3435_TMUAki_TMT10x_P_F7 66.087 17.327 502290 807280 10928 757980 507970 449020 567040 491560 515170 477810 641100 467770 753090 51907 772120 489210 477440 570480 497220 530830 467220 614550 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 502290 807280 10928 757980 507970 449020 567040 491560 515170 477810 641100 467770 753090 51907 772120 489210 477440 570480 497220 530830 467220 614550 1 1 1 1 1 1 1 1 1 1 1 14529000 0 14529000 11048 1456 10252 57938;57939 70213;70214 70213 2 LASTLVHLGEYQAAVDGAR Unmodified 1970.0221 0.022139011 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.17 2.15 3 1 2 2 2 2 6 6 66.742 66.83 3 4.1722E-58 22659 20211116_3446_TMUAki_TMT10x_S_F7 239.75 225.91 70647000 122080000 673030 112030000 90396000 113180000 84755000 83030000 77815000 85660000 94876000 65784000 113880000 5918800 115020000 86569000 114560000 86050000 86020000 80073000 83551000 90995000 17 17 13 17 17 17 17 17 17 17 17 32877000 54899000 143280 50138000 38059000 67424000 39117000 39372000 36184000 38941000 43007000 30613000 51209000 2140600 51744000 36526000 66990000 39532000 41434000 37181000 38050000 41277000 7 7 5 7 7 7 7 7 7 7 7 37770000 67185000 529750 61892000 52337000 45761000 45638000 43658000 41632000 46718000 51868000 35171000 62671000 3778200 63273000 50043000 47566000 46519000 44586000 42892000 45501000 49718000 10 10 8 10 10 10 10 10 10 10 10 18968000000 6515200000 12452000000 11049 1471 10253 57940;57941;57942;57943;57944;57945;57946;57947;57948;57949;57950;57951 70215;70216;70217;70218;70219;70220;70221;70222;70223;70224;70225;70226;70227;70228;70229;70230;70231;70232;70233;70234;70235 70234 21 LASTPFK Unmodified 762.42759 0.42759012 1006 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 47.092 46.972 2 0.0032147 14883 20211116_3439_TMUAki_TMT10x_S_F1 119.56 13.142 1828100 3065400 45448 3285100 1634700 1480900 1826700 2120400 2305100 2049500 2526700 1702500 2861200 191210 3308900 1575000 1634300 1857700 2121400 2332000 2004600 2430500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1828100 3065400 45448 3285100 1634700 1480900 1826700 2120400 2305100 2049500 2526700 1702500 2861200 191210 3308900 1575000 1634300 1857700 2121400 2332000 2004600 2430500 1 1 1 1 1 1 1 1 1 1 1 180180000 97789000 82393000 11050 1006 10254 57952;57953;57954;57955 70236;70237;70238 70237 3 LASTPFKGGTLFGGEVCK Unmodified 1867.9502 0.95021962 1006 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 0 1 By MS/MS 3 0 1 1 64.702 64.25 3 6.8176E-05 22960 20211116_3441_TMUAki_TMT10x_S_F3 79.461 60.138 3121500 5691400 40917 4413000 6260000 3861700 2996300 7682000 6122500 5682300 5450300 2906700 5305900 340880 4584000 5922800 4053900 3306700 7557900 6068000 5632000 5278600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3121500 5691400 40917 4413000 6260000 3861700 2996300 7682000 6122500 5682300 5450300 2906700 5305900 340880 4584000 5922800 4053900 3306700 7557900 6068000 5632000 5278600 1 1 1 1 1 1 1 1 1 1 1 447870000 0 447870000 11051 1006 10255 57956 70239 70239 1 LASVLGSEPSLDSEVTSK Unmodified 1817.9258 0.92583859 3013 Q9NY33;Q9NY33-4 DPP3 Dipeptidyl peptidase 3 yes no 0 0 0 0 By MS/MS By MS/MS 4.71 1.03 1 2 2 2 4 3 69.849 69.788 3 1.0821E-12 22960 20211116_3442_TMUAki_TMT10x_S_F4 137.61 121.72 107520000 182720000 4507700 192340000 121790000 153480000 114240000 78061000 53584000 74596000 117130000 100150000 170530000 13315000 194960000 116860000 157060000 114390000 83069000 59421000 72997000 111020000 8 8 8 8 8 8 8 8 8 8 8 71362000 122840000 2998100 128030000 91846000 123660000 79660000 51524000 33873000 48397000 77655000 66467000 114640000 8997400 130180000 87942000 124620000 80023000 55933000 38017000 47396000 73556000 4 4 4 4 4 4 4 4 4 4 4 36162000 59877000 1509600 64313000 29941000 29824000 34575000 26537000 19710000 26199000 39471000 33682000 55889000 4317800 64780000 28917000 32436000 34369000 27136000 21404000 25602000 37465000 4 4 4 4 4 4 4 4 4 4 4 3702000000 1900100000 1801900000 11052 3013 10256 57957;57958;57959;57960;57961;57962;57963 70240;70241;70242;70243;70244;70245;70246;70247;70248 70245 9 LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEK Unmodified 2773.4246 0.4246366 507 P05387 RPLP2 60S acidic ribosomal protein P2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.55 0.921 3 6 8 3 9 11 57.595 57.77 2;3;4;5 8.7505E-98 16620 20211116_3434_TMUAki_TMT10x_P_F6 260.53 249.16 67094000 112920000 1041300 127000000 65651000 83980000 60562000 62605000 69944000 68116000 87071000 62476000 105420000 5479200 127930000 62859000 87727000 61987000 64897000 71353000 66299000 83464000 25 25 13 25 25 25 25 25 25 25 25 28672000 46058000 652050 51708000 39648000 55624000 33872000 28821000 31346000 28871000 37120000 26700000 42998000 2562500 52410000 37901000 55822000 34581000 30657000 32204000 28195000 35630000 11 11 5 11 11 11 11 11 11 11 11 38422000 66866000 389230 75296000 26003000 28356000 26691000 33785000 38598000 39245000 49951000 35776000 62424000 2916700 75517000 24958000 31905000 27406000 34240000 39149000 38104000 47834000 14 14 8 14 14 14 14 14 14 14 14 63378000000 34082000000 29296000000 11053 507 10257 57964;57965;57966;57967;57968;57969;57970;57971;57972;57973;57974;57975;57976;57977;57978;57979;57980;57981;57982;57983 70249;70250;70251;70252;70253;70254;70255;70256;70257;70258;70259;70260;70261;70262;70263;70264;70265;70266;70267;70268;70269;70270;70271;70272;70273;70274 70254 26 LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKKDEK Unmodified 3273.6841 0.68409876 507 P05387 RPLP2 60S acidic ribosomal protein P2 yes yes 0 0 0 2 By MS/MS By MS/MS 6.27 0.75 2 4 5 6 5 51.331 51.666 4;5;6 5.6738E-61 15998 20211116_3435_TMUAki_TMT10x_P_F7 212.97 202.7 62535000 111720000 1536900 108180000 77578000 101880000 66656000 88672000 93141000 90473000 90351000 58235000 104230000 6147100 110510000 74183000 103880000 69003000 90876000 93497000 88286000 87245000 19 19 13 19 19 19 19 19 19 19 19 26288000 45736000 241630 46922000 53135000 70008000 40284000 37886000 40860000 38353000 37363000 24477000 42681000 2180600 48130000 50624000 69174000 41552000 40155000 41419000 37438000 36151000 9 9 5 9 9 9 9 9 9 9 9 36247000 65980000 1295300 61254000 24443000 31871000 26372000 50786000 52281000 52120000 52988000 33758000 61548000 3966500 62384000 23558000 34706000 27452000 50721000 52078000 50848000 51094000 10 10 8 10 10 10 10 10 10 10 10 18096000000 10806000000 7289600000 11054 507 10258 57984;57985;57986;57987;57988;57989;57990;57991;57992;57993;57994 70275;70276;70277;70278;70279;70280;70281;70282;70283;70284;70285;70286;70287;70288;70289;70290;70291;70292;70293 70282 19 LATALQK Unmodified 743.45414 0.45413923 526;527;525;1413;578;579 P06753-2;P06753-3;P06753-5;P06753-4;P06753-6;P09493-4;P09493;P09493-6;P06753;P09493-5;P67936;P67936-2;P07951;P07951-2;CON__Q3SX28;P07951-3 TPM3;TPM1;TPM4;TPM2 Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain;Tropomyosin beta chain no no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 44.275 44.338 2 0.0029967 11332 20211116_3447_TMUAki_TMT10x_S_F8 120.65 50.377 + 9499600 16828000 31771 15266000 12027000 11247000 11009000 8515800 9097500 8443200 12273000 8844900 15697000 804000 15625000 11505000 11644000 11161000 8793900 9451500 8249100 11741000 3 3 2 3 3 3 3 3 3 3 3 3679900 6139100 0 5422800 6332900 6328800 4655000 2890800 3237300 2951000 4682800 3426000 5725800 293670 5596300 6026900 6314300 4765600 3114500 3406700 2879600 4472600 1 1 0 1 1 1 1 1 1 1 1 5819600 10689000 31771 9843600 5693700 4918000 6354400 5625000 5860200 5492200 7589800 5418900 9970900 510330 10028000 5477900 5329800 6395700 5679400 6044800 5369500 7268100 2 2 2 2 2 2 2 2 2 2 2 217280000 112620000 104650000 11055 526;527;578;525;579;1413 10259 57995;57996 70294;70295;70296 70296 3 LATALQKLEEAEK Unmodified 1442.7981 0.7980593 526;527;525;1413;578;579 P06753-2;P06753-3;P06753-5;P06753-4;P06753-6;P09493-4;P09493;P09493-6;P06753;P09493-5;P67936;P67936-2;P07951;P07951-2;CON__Q3SX28;P07951-3 TPM3;TPM1;TPM4;TPM2 Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain;Tropomyosin beta chain no no 0 0 0 1 By MS/MS By MS/MS 6.71 1.03 1 2 2 2 4 3 69.375 69.474 3 6.3487E-12 22612 20211116_3433_TMUAki_TMT10x_P_F5 153.79 124.99 + 143940000 248640000 2666900 250380000 211470000 227600000 147510000 177910000 185910000 164110000 192090000 134040000 232010000 15339000 254960000 201320000 232150000 154160000 182980000 187670000 160840000 185110000 14 14 13 14 14 14 14 14 14 14 14 75883000 125010000 1498800 128930000 132600000 170340000 93662000 90923000 95649000 84322000 97048000 70666000 116660000 8482400 131870000 126250000 169190000 97103000 96254000 97269000 82626000 93575000 8 8 8 8 8 8 8 8 8 8 8 68054000 123630000 1168100 121440000 78869000 57264000 53845000 86989000 90263000 79785000 95042000 63373000 115350000 6856400 123090000 75063000 62963000 57054000 86729000 90403000 78219000 91536000 6 6 5 6 6 6 6 6 6 6 6 9285000000 5739800000 3545200000 11056 526;527;578;525;579;1413 10260 57997;57998;57999;58000;58001;58002;58003 70297;70298;70299;70300;70301;70302;70303;70304;70305;70306;70307;70308;70309;70310 70297 14 LATALQKLEEAEKAADESER Unmodified 2201.1176 0.11755554 526;527;525;1413;578;579 P06753-2;P06753-3;P06753-5;P06753-4;P06753-6;P09493-4;P09493;P09493-6;P06753;P09493-5;P67936;P67936-2;P07951;P07951-2;CON__Q3SX28;P07951-3 TPM3;TPM1;TPM4;TPM2 Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain;Tropomyosin beta chain no no 0 0 0 2 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 72.7 72.677 4 7.8027E-18 22773 20211116_3444_TMUAki_TMT10x_S_F5 144.22 127.71 + 32529000 71712000 560700 37539000 76153000 92728000 56145000 119660000 105070000 96542000 81325000 30291000 66787000 3796700 41535000 72548000 91666000 59511000 119610000 103910000 95240000 79187000 8 8 7 8 8 8 8 8 8 8 8 8861800 17681000 354850 10189000 15602000 39201000 21007000 28815000 27037000 23942000 22367000 8253900 16470000 1159800 11357000 15118000 37913000 21212000 29675000 27076000 23584000 21722000 2 2 2 2 2 2 2 2 2 2 2 23667000 54031000 205850 27351000 60550000 53526000 35138000 90843000 78037000 72600000 58958000 22038000 50317000 2636900 30178000 57430000 53753000 38299000 89934000 76835000 71656000 57465000 6 6 5 6 6 6 6 6 6 6 6 3448100000 1085900000 2362300000 11057 526;527;578;525;579;1413 10261 58004;58005;58006 70311;70312;70313;70314;70315;70316;70317;70318 70317 8 LATAMQEGEYDAERPPSKPPPVELR Oxidation (M) 2796.3752 0.37524356 1694 Q14203;Q14203-6;Q14203-3;Q14203-4;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 1 2 By MS/MS 5 0 1 1 46.722 46.886 4 1.5841E-29 12285 20211116_3444_TMUAki_TMT10x_S_F5 167.99 156.79 717620 1320400 0 1417800 632040 664100 416400 1359700 1209100 1132200 1093000 668120 1232400 51113 1428300 600140 738670 458190 1340600 1191200 1115200 1058000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 717620 1320400 0 1417800 632040 664100 416400 1359700 1209100 1132200 1093000 668120 1232400 51113 1428300 600140 738670 458190 1340600 1191200 1115200 1058000 1 1 0 1 1 1 1 1 1 1 1 191290000 0 191290000 11058 1694 10262 58007 70319 70319 2274 1 LATELYHQK Unmodified 1101.5819 0.58185893 1525 Q06210;Q06210-2 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes no 0 0 0 0 By MS/MS 6 0 1 1 40.165 40.182 3 0.10682 9540 20211116_3434_TMUAki_TMT10x_P_F6 36.334 14.248 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11059 1525 10263 58008 70320 70320 1 LATGSDDNCAAFFEGPPFK Unmodified 2042.9044 0.90439164 307 O75083 WDR1 WD repeat-containing protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 77.001 76.995 3 2.3426E-12 24522 20211116_3444_TMUAki_TMT10x_S_F5 127.97 116.53 22391000 41134000 472640 36149000 27951000 34255000 29105000 22565000 20821000 22834000 28169000 20852000 38364000 2374700 37201000 26858000 34751000 29206000 23540000 21805000 22289000 26946000 6 6 6 6 6 6 6 6 6 6 6 11958000 21209000 185390 18116000 12361000 21767000 14469000 11915000 10776000 11408000 14502000 11136000 19779000 1169800 18754000 11916000 21728000 14452000 12596000 11257000 11162000 13874000 3 3 3 3 3 3 3 3 3 3 3 10433000 19924000 287250 18033000 15590000 12488000 14636000 10650000 10045000 11426000 13667000 9716000 18584000 1204900 18447000 14942000 13023000 14754000 10944000 10549000 11127000 13072000 3 3 3 3 3 3 3 3 3 3 3 3138200000 1552800000 1585400000 11060 307 10264 58009;58010;58011;58012 70321;70322;70323;70324;70325;70326 70324 6 LATLLGLQAPPTR Unmodified 1349.8031 0.8030851 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 By MS/MS By MS/MS 4.75 0.661 3 4 1 4 4 74.337 74.335 2;3 7.6281E-15 24336 20211116_3431_TMUAki_TMT10x_P_F4 168.31 148.47 35228000 62716000 524310 51253000 46755000 79023000 46380000 87459000 69875000 71228000 59190000 32802000 58478000 3304800 53511000 44836000 78980000 47792000 88011000 69678000 70233000 57430000 8 8 5 8 8 8 8 8 8 8 8 16980000 28992000 511840 23430000 18533000 49668000 24891000 42513000 34321000 34221000 28204000 15814000 27032000 1906500 24688000 17961000 48819000 25208000 43337000 34286000 33763000 27397000 4 4 4 4 4 4 4 4 4 4 4 18247000 33724000 12473 27823000 28222000 29355000 21489000 44946000 35554000 37007000 30986000 16988000 31446000 1398300 28823000 26875000 30161000 22585000 44674000 35393000 36470000 30033000 4 4 1 4 4 4 4 4 4 4 4 3185800000 1708000000 1477700000 11061 1684 10265 58013;58014;58015;58016;58017;58018;58019;58020 70327;70328;70329;70330;70331;70332;70333;70334 70327 8 LATNAAVTVLR Unmodified 1127.6663 0.66625727 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 By MS/MS By MS/MS 4.4 2.73 2 2 2 2 2 5 5 49.885 49.838 2 2.9861E-11 14089 20211116_3436_TMUAki_TMT10x_P_F8 173.28 111.7 78207000 135440000 371890 143830000 110820000 117400000 80295000 118810000 117920000 102910000 114130000 72818000 126410000 6868200 145750000 105490000 121260000 84208000 120250000 118180000 101160000 110220000 10 10 5 10 10 10 10 10 10 10 10 32971000 55461000 83727 60848000 66175000 81075000 46616000 46742000 45526000 42392000 45260000 30698000 51771000 2965000 61997000 62945000 80574000 48274000 49127000 46353000 41581000 43669000 4 4 2 4 4 4 4 4 4 4 4 45235000 79980000 288160 82985000 44643000 36329000 33679000 72067000 72396000 60515000 68875000 42120000 74641000 3903200 83748000 42541000 40690000 35934000 71124000 71831000 59578000 66550000 6 6 3 6 6 6 6 6 6 6 6 5624200000 3651400000 1972800000 11062 1146 10266 58021;58022;58023;58024;58025;58026;58027;58028;58029;58030 70335;70336;70337;70338;70339;70340;70341;70342;70343;70344;70345;70346 70339 12 LATPTYGDLNHLVSATMSGVTTSLR Oxidation (M) 2620.3167 0.31666605 1640 Q13509;Q13509-2 TUBB3 Tubulin beta-3 chain yes no 0 0 1 0 By MS/MS By MS/MS 2.39 0.756 2 8 7 1 8 10 73.656 73.497 3;4 2.5639E-38 25322 20211116_3429_TMUAki_TMT10x_P_F2 190.88 172.63 77561000 142940000 664070 115590000 77485000 147770000 98622000 94484000 104700000 115240000 109750000 72217000 133280000 5011000 120330000 74828000 147350000 99119000 99375000 106430000 111700000 105710000 36 36 16 36 36 36 36 36 36 36 36 39199000 69683000 178200 56556000 34319000 89378000 45039000 44888000 51030000 57394000 52819000 36496000 64973000 2016800 59115000 33158000 88028000 45310000 48259000 51716000 55538000 50898000 17 17 6 17 17 17 17 17 17 17 17 38362000 73261000 485870 59029000 43166000 58387000 53583000 49596000 53668000 57849000 56927000 35721000 68307000 2994100 61215000 41670000 59323000 53809000 51117000 54710000 56159000 54815000 19 19 10 19 19 19 19 19 19 19 19 53263000000 24395000000 28868000000 11063 1640 10267 58031;58032;58033;58034;58035;58036;58037;58038;58039;58040;58041;58042;58043;58044;58045;58046;58047;58048 70347;70348;70349;70350;70351;70352;70353;70354;70355;70356;70357;70358;70359;70360;70361;70362;70363;70364;70365;70366;70367;70368;70369;70370;70371;70372;70373;70374;70375;70376;70377;70378;70379;70380;70381;70382;70383 70355 2205 37 LATPTYGDLNHLVSATMSGVTTSLR Unmodified 2604.3218 0.32175143 1640 Q13509;Q13509-2 TUBB3 Tubulin beta-3 chain yes no 0 0 0 0 By MS/MS By MS/MS 3.62 0.484 3 5 5 3 78.976 78.936 3;4 7.8034E-62 26639 20211116_3442_TMUAki_TMT10x_S_F4 237.71 227.17 41487000 66849000 401570 65298000 39329000 52640000 45391000 24898000 21014000 30913000 41676000 38627000 62371000 2795200 66535000 37852000 53784000 44970000 26895000 23178000 29943000 39564000 11 11 4 11 11 11 11 11 11 11 11 20253000 31534000 310210 30638000 17515000 32602000 20184000 14244000 12129000 17289000 20141000 18858000 29421000 1345000 31348000 16871000 32679000 20085000 15500000 12976000 16760000 19181000 6 6 2 6 6 6 6 6 6 6 6 21234000 35315000 91361 34660000 21814000 20038000 25207000 10654000 8885400 13624000 21536000 19768000 32950000 1450200 35186000 20980000 21105000 24886000 11394000 10202000 13183000 20383000 5 5 2 5 5 5 5 5 5 5 5 18921000000 9667700000 9253100000 11064 1640 10267 58049;58050;58051;58052;58053;58054;58055;58056 70384;70385;70386;70387;70388;70389;70390;70391;70392;70393;70394;70395 70392 12 LATQLTGPVMPVR Oxidation (M) 1397.7701 0.77007041 813 P26373;P26373-2 RPL13 60S ribosomal protein L13 yes no 0 0 1 0 By MS/MS By MS/MS 4.41 2.89 4 3 2 1 3 4 9 8 50.634 50.635 2;3 1.2765E-06 16252 20211116_3439_TMUAki_TMT10x_S_F1 115.34 95.212 27994000 46033000 184760 48476000 42771000 51640000 31155000 44576000 48241000 40644000 41518000 26064000 42963000 2345000 49329000 40707000 52254000 32738000 45560000 48090000 39857000 40259000 14 14 3 14 14 14 14 14 14 14 14 16572000 26623000 29455 27500000 31546000 40481000 21378000 25410000 26823000 22918000 23345000 15429000 24845000 1451100 28187000 29983000 40100000 22385000 26521000 26926000 22485000 22628000 8 8 2 8 8 8 8 8 8 8 8 11422000 19410000 155310 20976000 11225000 11159000 9776400 19165000 21417000 17726000 18173000 10635000 18118000 893950 21142000 10723000 12153000 10353000 19039000 21164000 17372000 17631000 6 6 1 6 6 6 6 6 6 6 6 15246000000 10529000000 4716500000 11065 813 10268 58057;58058;58059;58060;58061;58062;58063;58064;58065;58066;58067;58068;58069;58070;58071;58072;58073 70396;70397;70398;70399;70400;70401;70402;70403;70404;70405;70406;70407;70408;70409 70405 966 14 LATQLTGPVMPVR Unmodified 1381.7752 0.77515579 813 P26373;P26373-2 RPL13 60S ribosomal protein L13 yes no 0 0 0 0 By MS/MS By MS/MS 2.86 2.23 4 4 4 2 7 7 59.185 58.973 2;3 4.4531E-36 20770 20211116_3441_TMUAki_TMT10x_S_F3 270.1 236.71 54000000 87966000 127960 95646000 67671000 72060000 57055000 53418000 43320000 50088000 65301000 50275000 82110000 4064600 96679000 64580000 74446000 58004000 55153000 45452000 49056000 62313000 14 14 3 14 14 14 14 14 14 14 14 27710000 43873000 75754 48285000 40924000 52422000 34783000 30795000 24159000 27065000 34174000 25798000 40955000 2131600 49009000 39062000 52663000 35274000 32290000 25397000 26586000 32657000 7 7 2 7 7 7 7 7 7 7 7 26290000 44093000 52204 47361000 26748000 19638000 22273000 22624000 19161000 23023000 31127000 24477000 41155000 1933000 47671000 25518000 21783000 22730000 22863000 20054000 22469000 29657000 7 7 1 7 7 7 7 7 7 7 7 12339000000 7155800000 5183200000 11066 813 10268 58074;58075;58076;58077;58078;58079;58080;58081;58082;58083;58084;58085;58086;58087 70410;70411;70412;70413;70414;70415;70416;70417;70418;70419;70420;70421;70422;70423;70424 70423 15 LATQSNEITIPVTFESR Unmodified 1904.9844 0.98435652 492 P04792 HSPB1 Heat shock protein beta-1 yes yes 0 0 0 0 By MS/MS 5.33 0.471 2 1 3 67.619 67.553 2;3 9.1746E-51 20980 20211116_3444_TMUAki_TMT10x_S_F5 232.13 192.55 5335600 9530700 47526 8939500 6308100 5174900 6572100 4104600 4510700 4883700 6652800 4968300 8891000 500270 9105200 6058000 5480000 6588800 4250600 4755100 4737600 6351400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5335600 9530700 47526 8939500 6308100 5174900 6572100 4104600 4510700 4883700 6652800 4968300 8891000 500270 9105200 6058000 5480000 6588800 4250600 4755100 4737600 6351400 1 1 1 1 1 1 1 1 1 1 1 1966900000 0 1966900000 11067 492 10269 58088;58089;58090 70425;70426;70427 70426 3 LATVMLTRCTMENK Carbamidomethyl (C) 1723.8419 0.8419315 10 A2RRP1;A2RRP1-2 NBAS Neuroblastoma-amplified sequence yes no 0 1 0 1 By MS/MS 7 0 1 1 66.06 66.451 2 0.07833 22566 20211116_3446_TMUAki_TMT10x_S_F7 45.161 20.369 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11068 10 10270 58091 70428 70428 0 1 LATVVGENGSVLR Unmodified 1313.7303 0.73031409 2907 Q9NQS7;Q9NQS7-2 INCENP Inner centromere protein yes no 0 0 0 0 By MS/MS 7 0 1 1 24.286 24.426 3 0.10375 5461 20211116_3435_TMUAki_TMT10x_P_F7 26.124 7.2712 164000 244450 3905 277970 331890 334220 184290 143800 173330 133200 186690 152730 228220 19587 282050 314750 332730 194310 155500 177280 130520 179680 1 1 1 1 1 1 1 1 1 1 1 164000 244450 3905 277970 331890 334220 184290 143800 173330 133200 186690 152730 228220 19587 282050 314750 332730 194310 155500 177280 130520 179680 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3721300 3721300 0 11069 2907 10271 58092 70429 70429 1 LATYGITVAELTGDHQLCK Unmodified 2089.0514 0.051390229 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 By MS/MS By MS/MS 7.4 0.49 3 2 2 3 71.307 71.54 3 7.6459E-41 22970 20211116_3436_TMUAki_TMT10x_P_F8 200.58 167.38 10558000 14460000 53213 16682000 8595500 14601000 9650800 6906800 6306000 7835000 10910000 9829800 13501000 800360 16830000 8265200 14830000 9630500 7438400 6725000 7613800 10382000 2 2 1 2 2 2 2 2 2 2 2 10558000 14460000 53213 16682000 8595500 14601000 9650800 6906800 6306000 7835000 10910000 9829800 13501000 800360 16830000 8265200 14830000 9630500 7438400 6725000 7613800 10382000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3436000000 2251900000 1184100000 11070 352 10272 58093;58094;58095;58096;58097 70430;70431;70432;70433 70431 4 LAVAEVR Unmodified 756.44939 0.4493882 641 P12270 TPR Nucleoprotein TPR yes yes 0 0 0 0 By MS/MS 4 0 1 1 37.361 37.394 2 0.019667 9336 20211116_3431_TMUAki_TMT10x_P_F4 88.35 29.663 3654000 5724500 9157.7 5689000 6137900 6862000 4158900 4020900 4103200 3851200 4828800 3402300 5341400 346270 5823700 5836100 6854300 4320300 4226500 4202500 3768300 4635700 2 2 2 2 2 2 2 2 2 2 2 3654000 5724500 9157.7 5689000 6137900 6862000 4158900 4020900 4103200 3851200 4828800 3402300 5341400 346270 5823700 5836100 6854300 4320300 4226500 4202500 3768300 4635700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 199670000 199670000 0 11071 641 10273 58098 70434;70435 70435 2 LAVEALSSLDGDLAGR Unmodified 1585.8312 0.83115034 642 P12277 CKB Creatine kinase B-type yes yes 0 0 0 0 By MS/MS By MS/MS 3.27 1.34 4 7 26 5 4 4 1 21 30 68.196 68.152 2;3 8.7244E-143 28513 20211116_3441_TMUAki_TMT10x_S_F3 411.74 378.85 160560000 268780000 411030 254740000 178350000 239490000 195570000 163010000 158150000 167150000 198910000 149490000 250750000 9737500 260640000 171360000 243200000 196310000 169720000 163980000 163080000 190620000 42 42 22 42 42 42 42 42 42 42 42 87742000 142510000 112710 135010000 83841000 159700000 104790000 90097000 85117000 91163000 106260000 81692000 132950000 5169100 138630000 80877000 159600000 104590000 95149000 88203000 88991000 101850000 20 20 10 20 20 20 20 20 20 20 20 72821000 126270000 298320 119730000 94512000 79791000 90774000 72909000 73036000 75990000 92652000 67798000 117800000 4568400 122010000 90484000 83595000 91722000 74569000 75774000 74089000 88771000 22 22 12 22 22 22 22 22 22 22 22 63760000000 31754000000 32006000000 11072 642 10274 58099;58100;58101;58102;58103;58104;58105;58106;58107;58108;58109;58110;58111;58112;58113;58114;58115;58116;58117;58118;58119;58120;58121;58122;58123;58124;58125;58126;58127;58128;58129;58130;58131;58132;58133;58134;58135;58136;58137;58138;58139;58140;58141;58142;58143;58144;58145;58146;58147;58148;58149 70436;70437;70438;70439;70440;70441;70442;70443;70444;70445;70446;70447;70448;70449;70450;70451;70452;70453;70454;70455;70456;70457;70458;70459;70460;70461;70462;70463;70464;70465;70466;70467;70468;70469;70470;70471;70472;70473;70474;70475;70476;70477;70478;70479;70480;70481;70482;70483;70484;70485;70486;70487;70488;70489;70490;70491;70492 70474 57 LAVEAVLR Unmodified 869.53345 0.53345218 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 53.796 53.959 2 0.0028322 15982 20211116_3431_TMUAki_TMT10x_P_F4 104.75 27.972 4205600 6457800 43557 7245200 6658000 8056000 4803300 4240000 4534600 4114800 4884500 3916200 6028800 423620 7347800 6340000 8071200 4960900 4499800 4637400 4023900 4701100 1 1 1 1 1 1 1 1 1 1 1 4205600 6457800 43557 7245200 6658000 8056000 4803300 4240000 4534600 4114800 4884500 3916200 6028800 423620 7347800 6340000 8071200 4960900 4499800 4637400 4023900 4701100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 637700000 637700000 0 11073 1429 10275 58150;58151 70493;70494 70493 2 LAVNMVPFPR Oxidation (M) 1158.6219 0.62194961 1418;1668;2689;539;1640;488;2673;1889 Q13509;Q13509-2;P07437;A6NNZ2;P68371;Q13885;Q3ZCM7;Q9BVA1;P04350;Q9BUF5 TUBB3;TUBB;TUBB4B;TUBB2A;TUBB8;TUBB2B;TUBB4A;TUBB6 Tubulin beta-3 chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-6 chain no no 0 0 1 0 By MS/MS By MS/MS 3.38 2.26 3 4 4 2 1 2 8 8 59.753 59.684 2;3 5.3205E-05 19870 20211116_3441_TMUAki_TMT10x_S_F3 91.867 47.557 129800000 225510000 3101200 220500000 177370000 252070000 142880000 268040000 265930000 214380000 212050000 120870000 210410000 13527000 225770000 169340000 255200000 150540000 270110000 263240000 211580000 206220000 27 27 17 27 27 27 27 27 27 27 27 64806000 107590000 935080 105930000 103580000 182840000 88394000 119200000 115450000 97464000 98530000 60344000 100390000 6313200 109330000 98958000 180100000 91294000 123760000 115670000 96084000 95572000 14 14 9 14 14 14 14 14 14 14 14 64993000 117920000 2166200 114570000 73795000 69226000 54483000 148830000 150480000 116910000 113520000 60529000 110020000 7214100 116440000 70384000 75108000 59246000 146350000 147570000 115500000 110650000 13 13 8 13 13 13 13 13 13 13 13 40867000000 23217000000 17649000000 11074 1640;539;1418;1668;1889;2689;488;2673 10276 58152;58153;58154;58155;58156;58157;58158;58159;58160;58161;58162;58163;58164;58165;58166;58167 70495;70496;70497;70498;70499;70500;70501;70502;70503;70504;70505;70506;70507;70508;70509;70510;70511;70512;70513;70514;70515;70516;70517;70518;70519;70520;70521;70522 70520 382 28 LAVNMVPFPR Unmodified 1142.627 0.62703499 1418;1668;2689;539;1640;488;2673;1889 Q13509;Q13509-2;P07437;A6NNZ2;P68371;Q13885;Q3ZCM7;Q9BVA1;P04350;Q9BUF5 TUBB3;TUBB;TUBB4B;TUBB2A;TUBB8;TUBB2B;TUBB4A;TUBB6 Tubulin beta-3 chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-6 chain no no 0 0 0 0 By MS/MS By MS/MS 2.93 1.16 2 3 4 4 1 7 7 66.935 66.725 2;3 2.9217E-14 23945 20211116_3441_TMUAki_TMT10x_S_F3 231.29 201.93 97637000 171620000 1326400 177530000 120170000 120620000 110640000 63491000 46817000 63584000 110170000 90916000 160160000 9206300 179840000 115040000 125110000 110750000 67440000 52669000 62095000 104310000 15 15 13 15 15 15 15 15 15 15 15 51261000 88354000 632650 88298000 71848000 88101000 71115000 30964000 23272000 31997000 56876000 47734000 82444000 5127800 90079000 68911000 88480000 70692000 34396000 26961000 31207000 53826000 8 8 8 8 8 8 8 8 8 8 8 46376000 83261000 693760 89233000 48324000 32524000 39530000 32527000 23545000 31587000 53292000 43182000 77714000 4078500 89762000 46127000 36631000 40062000 33043000 25708000 30888000 50488000 7 7 5 7 7 7 7 7 7 7 7 42690000000 22038000000 20653000000 11075 1640;539;1418;1668;1889;2689;488;2673 10276 58168;58169;58170;58171;58172;58173;58174;58175;58176;58177;58178;58179;58180;58181 70523;70524;70525;70526;70527;70528;70529;70530;70531;70532;70533;70534;70535;70536;70537;70538 70533 16 LAVNNIAGIEEVNMIKDDGTVIHFNNPK Oxidation (M) 3080.5601 0.56008422 2509 Q96K17 BTF3L4 Transcription factor BTF3 homolog 4 yes yes 0 0 1 1 By MS/MS By MS/MS 6.57 0.904 1 2 3 1 3 4 73.112 73.176 4;5 1.4574E-24 24990 20211116_3435_TMUAki_TMT10x_P_F7 142.32 127.91 23645000 42519000 413190 34918000 29195000 48766000 32117000 40896000 39548000 39837000 36148000 22019000 39646000 2142100 36366000 28092000 48648000 32655000 41946000 39787000 38951000 34976000 9 9 7 9 9 9 9 9 9 9 9 13305000 23987000 244430 20131000 13702000 32751000 17748000 22593000 21648000 22132000 19712000 12390000 22368000 1055700 20998000 13255000 32358000 17912000 23470000 21784000 21635000 19076000 5 5 4 5 5 5 5 5 5 5 5 10341000 18532000 168760 14787000 15493000 16015000 14368000 18303000 17900000 17705000 16435000 9629400 17278000 1086300 15368000 14837000 16290000 14742000 18476000 18003000 17316000 15900000 4 4 3 4 4 4 4 4 4 4 4 6482900000 3320700000 3162200000 11076 2509 10277 58182;58183;58184;58185;58186;58187;58188 70539;70540;70541;70542;70543;70544;70545;70546;70547 70542 2782 9 LAVNNIAGIEEVNMIKDDGTVIHFNNPK Unmodified 3064.5652 0.5651696 2509 Q96K17 BTF3L4 Transcription factor BTF3 homolog 4 yes yes 0 0 0 1 By MS/MS By MS/MS 7.33 0.745 1 2 3 2 4 76.048 76.06 4;5 1.5383E-12 26104 20211116_3435_TMUAki_TMT10x_P_F7 108.57 91.064 22267000 35863000 231890 33360000 25375000 29321000 27937000 14585000 14164000 16916000 24756000 20734000 33455000 2053400 34149000 24406000 29788000 27777000 15642000 15388000 16425000 23553000 6 6 4 6 6 6 6 6 6 6 6 12582000 20035000 179150 19439000 11764000 18511000 14887000 6739300 6559300 8602300 13193000 11717000 18692000 1198700 19859000 11370000 18651000 14679000 7501900 7272700 8324700 12521000 2 2 2 2 2 2 2 2 2 2 2 9684600 15828000 52737 13921000 13611000 10810000 13050000 7845300 7604700 8313300 11563000 9017300 14762000 854760 14290000 13036000 11138000 13098000 8140200 8115300 8099900 11032000 4 4 2 4 4 4 4 4 4 4 4 4601500000 1952300000 2649200000 11077 2509 10277 58189;58190;58191;58192;58193;58194 70548;70549;70550;70551;70552 70549 5 LAVQQVEEAQQLR Unmodified 1510.8104 0.81035532 92 O00461 GOLIM4 Golgi integral membrane protein 4 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 51.258 51.262 2;3 6.2788E-18 15359 20211116_3442_TMUAki_TMT10x_S_F4 147.62 120.83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11078 92 10278 58195;58196 70553;70554 70554 2 LAVVDPLFGMQPIR Oxidation (M) 1570.8541 0.85413439 554 P08243;P08243-2 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes no 0 0 1 0 By MS/MS By MS/MS 5.86 3.09 2 1 4 4 3 75.83 75.787 2;3 9.8621E-05 24665 20211116_3436_TMUAki_TMT10x_P_F8 88.275 68.489 24062000 40972000 8138.6 34843000 33367000 60078000 34910000 40074000 37858000 42011000 38730000 22401000 38209000 1805400 36356000 32012000 59197000 35421000 41812000 38416000 40950000 37334000 6 6 1 6 6 6 6 6 6 6 6 14401000 23855000 8138.6 20728000 19135000 45020000 21387000 24570000 23283000 25731000 23211000 13407000 22248000 1059700 21730000 18391000 43905000 21635000 26048000 23601000 25082000 22393000 3 3 1 3 3 3 3 3 3 3 3 9660900 17117000 0 14115000 14232000 15058000 13523000 15504000 14575000 16280000 15519000 8994300 15961000 745680 14626000 13621000 15292000 13786000 15764000 14815000 15868000 14941000 3 3 0 3 3 3 3 3 3 3 3 4808100000 3056000000 1752100000 11079 554 10279 58197;58198;58199;58200;58201;58202;58203 70555;70556;70557;70558;70559;70560;70561 70558 515 7 LAVYIDK Unmodified 820.46945 0.46945494 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 56.009 56.137 2 0.0026043 17095 20211116_3433_TMUAki_TMT10x_P_F5 123.96 63.807 55827000 82979000 278760 88585000 69089000 67214000 59101000 49672000 49303000 49032000 61371000 51982000 77449000 5044400 89656000 66009000 69397000 60168000 51369000 51014000 47913000 58828000 4 4 3 4 4 4 4 4 4 4 4 28416000 41189000 52698 44217000 37938000 45475000 30981000 25464000 26636000 25970000 31278000 26458000 38445000 2508800 44913000 36203000 45800000 31655000 26916000 27452000 25343000 30029000 3 3 2 3 3 3 3 3 3 3 3 27412000 41790000 226060 44368000 31151000 21739000 28120000 24207000 22667000 23062000 30092000 25525000 39004000 2535700 44742000 29806000 23598000 28513000 24453000 23562000 22571000 28799000 1 1 1 1 1 1 1 1 1 1 1 3731500000 1759300000 1972200000 11080 748 10280 58204;58205;58206;58207;58208;58209 70562;70563;70564;70565;70566;70567 70563 6 LAVYQAGASEGAER Unmodified 1420.6947 0.69465686 48 CON__Q03247 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 38.734 38.845 2;3 5.5154E-37 10543 20211116_3442_TMUAki_TMT10x_S_F4 240.8 206.55 + 877820 1371900 33325 1688200 1512300 1306300 1120000 1497400 2250300 1258700 1359400 817550 1281300 108070 1694200 1441900 1358600 1191500 1505700 2208200 1239100 1338900 6 6 4 6 6 6 6 6 6 6 6 391350 551110 16796 758910 995480 857990 527580 555000 823660 514230 567810 364500 515020 55195 761020 943680 861140 568780 578360 815900 503910 555670 4 4 3 4 4 4 4 4 4 4 4 486470 820760 16529 929330 516810 448330 592400 942420 1426600 744460 791540 453050 766260 52877 933210 498230 497500 622770 927320 1392300 735240 783230 2 2 1 2 2 2 2 2 2 2 2 97560000 32986000 64574000 11081 48 10281 58210;58211;58212;58213 70568;70569;70570;70571;70572;70573 70573 6 LAYCQSEELRR Unmodified 1423.6878 0.68779734 1109 P49643;P49643-2 PRIM2 DNA primase large subunit yes no 0 0 0 1 By MS/MS 5 0 1 1 32.759 32.923 3 1.367E-06 6517 20211116_3444_TMUAki_TMT10x_S_F5 127.56 103.81 232840 354130 279.59 435400 219040 183510 241400 202000 200270 184750 285780 216780 330740 17666 434670 210490 202900 242420 203930 208570 181150 273030 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 232840 354130 279.59 435400 219040 183510 241400 202000 200270 184750 285780 216780 330740 17666 434670 210490 202900 242420 203930 208570 181150 273030 2 2 1 2 2 2 2 2 2 2 2 6710300 0 6710300 11082 1109 10282 58214 70574;70575 70575 2 LAYELYTEALGIDPNNIK Unmodified 2036.0466 0.046622427 2590 Q99615;Q99615-2 DNAJC7 DnaJ homolog subfamily C member 7 yes no 0 0 0 0 By MS/MS 7 0 1 1 80.72 80.754 3 7.6246E-11 28552 20211116_3446_TMUAki_TMT10x_S_F7 121.82 98.715 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11083 2590 10283 58215 70576 70576 1 LAYFNDIAVGAVCCR Unmodified 1727.8123 0.81234593 2762 Q9GZZ1 NAA50 N-alpha-acetyltransferase 50 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 4 2 2 74.081 73.944 2;3 1.8202E-37 25325 20211116_3429_TMUAki_TMT10x_P_F2 244.71 236.82 12181000 21411000 71229 17876000 14947000 19053000 15127000 12166000 10254000 12350000 15603000 11343000 19966000 1104100 18504000 14340000 19183000 15184000 12723000 10835000 12054000 14886000 5 5 4 5 5 5 5 5 5 5 5 6207700 10661000 6484.1 8915600 6631600 12213000 8053300 6217700 5325400 6312700 7448000 5779900 9941200 515700 9267900 6394100 12103000 8010000 6627100 5612400 6161400 7119100 2 2 1 2 2 2 2 2 2 2 2 5973700 10750000 64745 8960900 8315200 6840500 7073800 5948400 4928800 6037300 8155000 5562600 10025000 588400 9236300 7945700 7079400 7173800 6095600 5222600 5892700 7767000 3 3 3 3 3 3 3 3 3 3 3 2192300000 1249900000 942410000 11084 2762 10284 58216;58217;58218;58219 70577;70578;70579;70580;70581 70578 5 LAYIAHPK Unmodified 911.52289 0.52288749 1066 P47914 RPL29 60S ribosomal protein L29 yes yes 0 0 0 0 By MS/MS By MS/MS 4.43 2.61 3 2 2 2 1 1 3 8 6 38.537 38.626 2;3 0.0010467 11563 20211116_3439_TMUAki_TMT10x_S_F1 129.16 89.057 11590000 19877000 162130 18634000 15939000 16174000 13189000 12830000 12900000 11998000 14096000 10792000 18543000 1153800 19061000 15223000 16554000 13513000 13188000 13178000 11752000 13561000 11 11 6 11 11 11 11 11 11 11 11 5503700 9567100 127190 8792700 9431500 11709000 7410700 6315200 6268000 5990600 6436300 5125400 8924300 629840 9068300 9000300 11627000 7587300 6683400 6432600 5864100 6203700 4 4 4 4 4 4 4 4 4 4 4 6085800 10310000 34939 9841700 6507700 4465500 5778000 6514700 6631700 6007300 7659700 5666600 9618600 523980 9992800 6222400 4926800 5925500 6505100 6745700 5887900 7357200 7 7 2 7 7 7 7 7 7 7 7 3284200000 1872200000 1412000000 11085 1066 10285 58220;58221;58222;58223;58224;58225;58226;58227;58228;58229;58230;58231;58232;58233 70582;70583;70584;70585;70586;70587;70588;70589;70590;70591;70592;70593;70594 70589 13 LAYINPDLALEEK Unmodified 1487.7872 0.78716026 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.52 1.68 4 4 4 5 4 4 13 12 70.348 70.307 2;3 1.2359E-35 24030 20211116_3433_TMUAki_TMT10x_P_F5 257.79 223.07 246770000 405930000 2313200 407590000 297970000 382200000 287360000 295850000 291100000 299020000 325300000 229770000 378780000 21916000 415310000 285490000 388980000 292150000 305250000 297190000 291910000 312750000 42 42 23 42 42 42 42 42 42 42 42 127030000 205240000 855580 206640000 155930000 262360000 164280000 148390000 149270000 154850000 163490000 118280000 191520000 10843000 211540000 149720000 261270000 165740000 156820000 153020000 150970000 157270000 22 22 12 22 22 22 22 22 22 22 22 119740000 200680000 1457700 200950000 142040000 119840000 123070000 147460000 141830000 144170000 161810000 111490000 187260000 11074000 203770000 135770000 127710000 126410000 148440000 144180000 140940000 155480000 20 20 11 20 20 20 20 20 20 20 20 52083000000 26359000000 25724000000 11086 897 10286 58234;58235;58236;58237;58238;58239;58240;58241;58242;58243;58244;58245;58246;58247;58248;58249;58250;58251;58252;58253;58254;58255;58256;58257;58258 70595;70596;70597;70598;70599;70600;70601;70602;70603;70604;70605;70606;70607;70608;70609;70610;70611;70612;70613;70614;70615;70616;70617;70618;70619;70620;70621;70622;70623;70624;70625;70626;70627;70628;70629;70630;70631;70632;70633;70634;70635;70636 70608 42 LAYRPPK Unmodified 843.49667 0.49667274 558 P08574 CYC1 Cytochrome c1, heme protein, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 34.138 33.907 3 0.011557 9055 20211116_3429_TMUAki_TMT10x_P_F2 86.086 43.06 2647800 4230600 77469 4203500 3552700 3653500 3044400 2098300 2271100 2242300 3223100 2465900 3947500 304390 4282000 3398400 3720900 3090700 2216200 2378000 2184000 3079700 3 3 3 3 3 3 3 3 3 3 3 2014500 3146900 61819 3092400 2825500 3073500 2169400 1661200 1744400 1733500 2429200 1876200 2936200 235990 3158300 2696400 3100500 2221700 1762400 1817500 1690100 2322100 2 2 2 2 2 2 2 2 2 2 2 633210 1083700 15650 1111100 727200 579990 874970 437050 526700 508810 793920 589700 1011300 68399 1123600 701940 620400 869010 453720 560550 493970 757590 1 1 1 1 1 1 1 1 1 1 1 58354000 30697000 27658000 11087 558 10287 58259;58260 70637;70638;70639 70637 3 LAYVAAGDLAPINAFIGGLAAQEVMK Oxidation (M) 2618.3778 0.37780975 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 1 0 By MS/MS By MS/MS 2 0 5 2 3 82.451 82.444 3;4 9.7708E-09 27445 20211116_3440_TMUAki_TMT10x_S_F2 95.666 80.738 8718500 14063000 125420 12815000 8987300 15163000 10635000 9866000 10286000 10946000 10703000 8118200 13117000 666320 13197000 8662300 15183000 10691000 10331000 10495000 10646000 10312000 8 8 4 8 8 8 8 8 8 8 8 5206200 8139800 19888 7145700 4937400 10466000 5053200 5774900 5847800 6429100 5772200 4847100 7591600 382630 7409700 4734200 10352000 5144300 6127800 5911700 6252100 5570600 4 4 1 4 4 4 4 4 4 4 4 3512300 5922900 105530 5669300 4049900 4697300 5581900 4091100 4438500 4517100 4930900 3271100 5525700 283690 5787000 3928100 4831600 5546500 4202900 4583000 4394000 4741400 4 4 3 4 4 4 4 4 4 4 4 2500400000 1272800000 1227700000 11088 769 10288 58261;58262;58263;58264;58265 70640;70641;70642;70643;70644;70645;70646;70647 70644 894 8 LAYVAPTIPR Unmodified 1099.639 0.63897988 149 O14974;O14974-4;O14974-3;O14974-2;O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 54.667 54.445 2 4.5998E-05 17423 20211116_3429_TMUAki_TMT10x_P_F2 133.33 99.018 8901800 15771000 29302 16188000 11678000 13787000 10126000 14714000 13452000 12744000 13892000 8288100 14717000 731250 16449000 11155000 14214000 10455000 14854000 13556000 12527000 13388000 3 3 1 3 3 3 3 3 3 3 3 2937700 4866300 0 5348300 5503700 7724400 4168300 4537700 4483000 3979500 4689100 2734900 4542600 226560 5457600 5240100 7650900 4307600 4757800 4554200 3909600 4517000 1 1 0 1 1 1 1 1 1 1 1 5964100 10904000 29302 10840000 6174100 6062800 5957600 10176000 8969500 8764000 9203100 5553200 10175000 504690 10992000 5915100 6563400 6147600 10096000 9001400 8617600 8870700 2 2 1 2 2 2 2 2 2 2 2 642270000 421080000 221200000 11089 149 10289 58266;58267 70648;70649;70650 70648 3 LCAGCPKPIPVDSPDLEEPLSHSIAK Unmodified 2829.4041 0.40410085 34 CON__Q2KJ62;CON__P01044-1 yes no 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 61.567 61.577 4 2.0415E-10 18621 20211116_3445_TMUAki_TMT10x_S_F6 102.07 84.854 + 14247000 26501000 224530 23133000 21019000 25255000 17306000 18696000 21525000 19016000 20405000 13267000 24716000 1458300 23869000 20072000 25450000 17879000 19349000 21674000 18559000 19719000 5 5 4 5 5 5 5 5 5 5 5 7473300 13052000 156410 11802000 11765000 16725000 10258000 8868700 10198000 9104600 9784900 6959300 12174000 798520 12202000 11251000 16558000 10482000 9420700 10363000 8882300 9452000 2 2 1 2 2 2 2 2 2 2 2 6774100 13450000 68114 11331000 9253400 8530200 7048200 9827300 11327000 9911300 10620000 6307900 12542000 659820 11667000 8821300 8891900 7397000 9928800 11311000 9676500 10267000 3 3 3 3 3 3 3 3 3 3 3 1036300000 662610000 373720000 11090 34 10290 58268;58269 70651;70652;70653;70654;70655 70655 5 LCATQFNNIFFLD Unmodified 1601.7548 0.75481428 1460 P86791;P86790 CCZ1;CCZ1B Vacuolar fusion protein CCZ1 homolog;Vacuolar fusion protein CCZ1 homolog B yes no 0 0 0 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 1 3 82.931 82.943 2 3.8855E-09 27578 20211116_3436_TMUAki_TMT10x_P_F8 133.99 123.71 1365700 2323100 0 1794600 1740800 2033800 1765000 1663900 1630400 1633600 1866200 1271400 2165700 101110 1871700 1668600 2048800 1784900 1709500 1672900 1596700 1792900 3 3 0 3 3 3 3 3 3 3 3 344530 610910 0 471040 360390 765540 458770 392770 368520 429360 441830 320750 569520 24246 494830 347740 753340 457420 419250 381450 417830 423940 1 1 0 1 1 1 1 1 1 1 1 1021200 1712200 0 1323500 1380400 1268200 1306200 1271100 1261900 1204200 1424300 950690 1596200 76865 1376900 1320900 1295500 1327400 1290200 1291400 1178900 1369000 2 2 0 2 2 2 2 2 2 2 2 461220000 232770000 228450000 11091 1460 10291 58270;58271;58272;58273 70656;70657;70658 70656 3 LCCPATAPQEAPAPEGR Unmodified 1823.8295 0.82945256 2417 Q96B54 ZNF428 Zinc finger protein 428 yes yes 0 0 0 0 By MS/MS 4 0 1 1 38.602 38.643 3 0.00018162 9854 20211116_3431_TMUAki_TMT10x_P_F4 75.376 55.636 1157500 1805000 60211 2026600 2960200 2705200 1762500 1380400 1377600 1239200 1851200 1078200 1685000 177320 2062000 2811900 2684300 1838500 1466100 1435100 1216100 1771200 1 1 1 1 1 1 1 1 1 1 1 1157500 1805000 60211 2026600 2960200 2705200 1762500 1380400 1377600 1239200 1851200 1078200 1685000 177320 2062000 2811900 2684300 1838500 1466100 1435100 1216100 1771200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 70409000 70409000 0 11092 2417 10292 58274 70659 70659 1 LCDCPGLIFPSLLPR Unmodified 1756.9004 0.90043266 958 P36915;P36915-2 GNL1 Guanine nucleotide-binding protein-like 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 79.693 79.643 2 1.0263E-19 29078 20211116_3441_TMUAki_TMT10x_S_F3 146.36 105.33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11093 958 10293 58275 70660 70660 1 LCDSYEIRPGK Unmodified 1336.6445 0.64453555 211 O43390;O43390-2;O43390-3;O43390-4 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 41.215 41.308 3 2.4095E-08 10060 20211116_3444_TMUAki_TMT10x_S_F5 148.28 124.9 24961000 37177000 178450 48706000 69715000 42935000 29669000 32382000 32556000 25022000 37621000 23241000 34733000 2666600 48788000 65837000 43858000 32277000 33236000 33174000 24741000 36135000 8 8 4 8 8 8 8 8 8 8 8 16001000 22826000 148240 30314000 59969000 36173000 20551000 21137000 21283000 15926000 23341000 14899000 21327000 1987800 30484000 56513000 36151000 22929000 22094000 21693000 15769000 22453000 4 4 2 4 4 4 4 4 4 4 4 8959900 14351000 30207 18393000 9745500 6762100 9117800 11245000 11273000 9096200 14280000 8341900 13406000 678720 18304000 9323700 7706900 9348100 11142000 11481000 8972300 13682000 4 4 2 4 4 4 4 4 4 4 4 2354100000 1236600000 1117500000 11094 211 10294 58276;58277;58278;58279 70661;70662;70663;70664;70665;70666;70667;70668 70665 8 LCEAICPAQAITIEAEPR Unmodified 2040.9972 0.99724617 71 O00217 NDUFS8 NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 67.238 67.332 3 4.7134E-12 21452 20211116_3431_TMUAki_TMT10x_P_F4 126.19 113.63 5557400 8997300 91465 8402000 6306300 12957000 7042400 9147700 7619100 8398700 7655000 5175200 8393200 556480 8681600 6070800 12833000 7122700 9470600 7727100 8233500 7383300 2 2 2 2 2 2 2 2 2 2 2 5557400 8997300 91465 8402000 6306300 12957000 7042400 9147700 7619100 8398700 7655000 5175200 8393200 556480 8681600 6070800 12833000 7122700 9470600 7727100 8233500 7383300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1085600000 1085600000 0 11095 71 10295 58280;58281 70669;70670 70669 2 LCEGFNEVLK Unmodified 1207.5907 0.59070906 3351 Q9Y6H1 CHCHD2 Coiled-coil-helix-coiled-coil-helix domain-containing protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.71 1.03 1 2 2 2 4 3 61.608 61.606 2 5.32E-11 19337 20211116_3433_TMUAki_TMT10x_P_F5 208.66 150.37 37781000 60562000 161690 66644000 61255000 70423000 45082000 51825000 56867000 53241000 56363000 35178000 56533000 3474500 67615000 58328000 71092000 46939000 53673000 57318000 51940000 54387000 7 7 3 7 7 7 7 7 7 7 7 19172000 30039000 153210 32840000 49498000 59011000 33838000 25613000 28801000 27746000 27778000 17852000 28040000 2075500 33696000 47071000 57751000 34987000 27791000 29484000 27010000 26828000 4 4 2 4 4 4 4 4 4 4 4 18609000 30523000 8481.9 33804000 11757000 11413000 11243000 26212000 28066000 25495000 28584000 17326000 28494000 1399000 33919000 11257000 13340000 11952000 25882000 27834000 24929000 27558000 3 3 1 3 3 3 3 3 3 3 3 4799000000 3154600000 1644400000 11096 3351 10296 58282;58283;58284;58285;58286;58287;58288 70671;70672;70673;70674;70675;70676;70677 70673 7 LCEQLSTVIPNSHVYYR Unmodified 2078.0255 0.025509829 2848 Q9H9Y2 RPF1 Ribosome production factor 1 yes yes 0 0 0 0 By MS/MS 8 0 1 1 58.822 58.814 3 4.3296E-11 17168 20211116_3447_TMUAki_TMT10x_S_F8 130.39 110.29 1678500 2684900 35160 2613200 1772000 2038700 1805500 2313300 2123300 2367900 2380700 1563100 2505000 173240 2662400 1702100 2118500 1839500 2339800 2155300 2310400 2288600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1678500 2684900 35160 2613200 1772000 2038700 1805500 2313300 2123300 2367900 2380700 1563100 2505000 173240 2662400 1702100 2118500 1839500 2339800 2155300 2310400 2288600 1 1 1 1 1 1 1 1 1 1 1 332830000 0 332830000 11097 2848 10297 58289 70678 70678 1 LCFLDKVEPHATIAEIK Unmodified 1983.0499 0.049933666 3027 Q9NZ01 TECR Very-long-chain enoyl-CoA reductase yes yes 0 0 0 1 By matching By MS/MS 7.5 0.5 1 1 1 1 65.395 65.672 4 0.00037909 20025 20211116_3447_TMUAki_TMT10x_S_F8 73.464 60.586 7808500 14557000 243180 15155000 9317800 9706000 8321800 8063000 7212200 9475800 11058000 7272300 13586000 895150 15337000 8924000 10187000 8458900 8323100 7522200 9196400 10548000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7808500 14557000 243180 15155000 9317800 9706000 8321800 8063000 7212200 9475800 11058000 7272300 13586000 895150 15337000 8924000 10187000 8458900 8323100 7522200 9196400 10548000 1 1 1 1 1 1 1 1 1 1 1 896050000 283050000 613000000 11098 3027 10298 58290;58291 70679 70679 1 LCGPYEK Unmodified 865.40039 0.4003891 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 0 By MS/MS 6 0 1 1 40.113 40.277 2 0.010369 9919 20211116_3445_TMUAki_TMT10x_S_F6 97.602 63.524 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11099 2345 10299 58292 70680 70680 1 LCGSGFQSIVNGCQEICVK Unmodified 2154.986 0.98602955 1019 P42765 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 68.925 69.027 3 1.3454E-12 21848 20211116_3436_TMUAki_TMT10x_P_F8 133.52 116.24 2538700 4157400 27516 3575300 2528000 3942600 2785700 2351300 1817800 2266600 3051600 2364000 3877100 235970 3694000 2432100 3958000 2782200 2468400 1935400 2217200 2905500 1 1 1 1 1 1 1 1 1 1 1 2538700 4157400 27516 3575300 2528000 3942600 2785700 2351300 1817800 2266600 3051600 2364000 3877100 235970 3694000 2432100 3958000 2782200 2468400 1935400 2217200 2905500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1175300000 1175300000 0 11100 1019 10300 58293;58294 70681;70682 70681 2 LCHIAFHVPAGQPLAR Unmodified 1785.9461 0.94607772 2499 Q96IR7 HPDL 4-hydroxyphenylpyruvate dioxygenase-like protein yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 47.384 47.373 4 6.0128E-15 13225 20211116_3431_TMUAki_TMT10x_P_F4 142.83 128.82 2850100 4042000 9929.6 4717300 4235000 4428500 2971400 3344000 3416100 2949200 3548800 2653500 3774200 235490 4760500 4027700 4504900 3093900 3442900 3460500 2896600 3419300 4 4 2 4 4 4 4 4 4 4 4 1855800 2403000 0 2824500 3320100 3608300 2189300 2067700 2028300 1805000 2132000 1727700 2243800 144920 2863400 3153100 3592900 2274800 2172200 2074200 1773700 2053400 2 2 0 2 2 2 2 2 2 2 2 994230 1639000 9929.6 1892800 914940 820220 782150 1276300 1387800 1144200 1416800 925800 1530400 90572 1897000 874550 912000 819060 1270700 1386400 1123000 1365900 2 2 2 2 2 2 2 2 2 2 2 1253500000 725990000 527520000 11101 2499 10301 58295;58296;58297;58298 70683;70684;70685;70686 70684 4 LCIEVTPQSK Unmodified 1173.6064 0.60635913 1303 P61221 ABCE1 ATP-binding cassette sub-family E member 1 yes yes 0 0 0 0 By MS/MS 6 0 1 1 52.153 52.285 3 0.00064196 14774 20211116_3445_TMUAki_TMT10x_S_F6 85.377 62.46 2550100 4518100 94718 4891700 2777800 2358900 2213900 3541900 3473700 3327600 3677900 2375100 4217200 302890 4926100 2655100 2585900 2314100 3535000 3486000 3258700 3541600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2550100 4518100 94718 4891700 2777800 2358900 2213900 3541900 3473700 3327600 3677900 2375100 4217200 302890 4926100 2655100 2585900 2314100 3535000 3486000 3258700 3541600 2 2 2 2 2 2 2 2 2 2 2 104390000 0 104390000 11102 1303 10302 58299 70687;70688 70688 2 LCLISTFLEDGIR Unmodified 1535.8018 0.80176447 178 O15260;O15260-3;O15260-2 SURF4 Surfeit locus protein 4 yes no 0 0 0 0 By MS/MS By MS/MS 4.25 3.27 2 1 1 1 3 81.063 81.064 2 1.1452E-21 26215 20211116_3447_TMUAki_TMT10x_S_F8 168.22 105.06 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11103 178 10303 58300;58301;58302;58303 70689;70690;70691;70692 70692 4 LCLQSIAFISR Unmodified 1306.7067 0.70674187 1263 P57088 TMEM33 Transmembrane protein 33 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 73.456 73.484 2 0.019419 23150 20211116_3444_TMUAki_TMT10x_S_F5 65.627 44.725 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11104 1263 10304 58304;58305 70693;70694 70694 2 LCLTLHNNEGSYLAHTQGK Unmodified 2155.048 0.048036185 1806 Q15428 SF3A2 Splicing factor 3A subunit 2 yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 46.79 46.992 4 1.7231E-31 12417 20211116_3447_TMUAki_TMT10x_S_F8 186.45 170.33 7206300 12208000 38244 14050000 12009000 13658000 7831400 7641500 6956800 6647200 8773100 6710000 11399000 696990 14197000 11412000 13803000 8135000 8043200 7180000 6533000 8406900 3 3 2 3 3 3 3 3 3 3 3 5400100 8808600 11506 9952400 10261000 12486000 6428900 5655700 4999300 4961100 6498400 5028100 8223700 523140 10110000 9742500 12410000 6677200 6074300 5201700 4873900 6222400 2 2 1 2 2 2 2 2 2 2 2 1806100 3399800 26738 4097500 1748100 1172200 1402500 1985800 1957500 1686100 2274700 1681900 3175000 173850 4087100 1669100 1392800 1457900 1969000 1978400 1659100 2184500 1 1 1 1 1 1 1 1 1 1 1 1271900000 945830000 326050000 11105 1806 10305 58306;58307;58308 70695;70696;70697 70697 3 LCLTLHNNEGSYLAHTQGKK Unmodified 2283.143 0.1429992 1806 Q15428 SF3A2 Splicing factor 3A subunit 2 yes yes 0 0 0 1 By MS/MS By matching 2 0 2 1 1 43.748 43.61 5 2.0319E-13 13041 20211116_3429_TMUAki_TMT10x_P_F2 136.85 124.29 1302900 1796400 4417.2 2340100 2352200 2934600 1462300 1227500 1253400 1077800 1556600 1213200 1678200 126830 2357800 2233300 2914600 1523400 1329700 1295000 1058800 1492200 1 1 1 1 1 1 1 1 1 1 1 1302900 1796400 4417.2 2340100 2352200 2934600 1462300 1227500 1253400 1077800 1556600 1213200 1678200 126830 2357800 2233300 2914600 1523400 1329700 1295000 1058800 1492200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 364580000 264060000 100510000 11106 1806 10306 58309;58310 70698 70698 1 LCLYTACAGIRPDR Unmodified 1664.8127 0.81268028 780 P23368;P23368-2 ME2 NAD-dependent malic enzyme, mitochondrial yes no 0 0 0 1 By matching By MS/MS 2.5 0.5 1 1 1 1 49.382 49.067 3 6.3592E-24 16751 20211116_3441_TMUAki_TMT10x_S_F3 194.86 171.02 2149100 3560300 0 3973000 1985500 1632400 1529900 2516800 1987000 2187000 2529800 2000900 3323600 160340 3988900 1891300 1827200 1589900 2504400 2020700 2149500 2423600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2149100 3560300 0 3973000 1985500 1632400 1529900 2516800 1987000 2187000 2529800 2000900 3323600 160340 3988900 1891300 1827200 1589900 2504400 2020700 2149500 2423600 1 1 0 1 1 1 1 1 1 1 1 882540000 585630000 296910000 11107 780 10307 58311;58312 70699 70699 1 LCNDHEVLTFIK Unmodified 1487.7442 0.74424959 2310 Q8WVV9;Q8WVV9-5;Q8WVV9-4 HNRNPLL Heterogeneous nuclear ribonucleoprotein L-like yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 58.539 58.588 3 0.00011831 17385 20211116_3445_TMUAki_TMT10x_S_F6 91.62 64.522 7332400 12010000 0 13192000 9829300 12423000 8237700 10095000 8639100 9348000 9505000 6826900 11211000 604900 13363000 9382300 12651000 8451500 10359000 8802000 9160500 9142400 2 2 0 2 2 2 2 2 2 2 2 3567500 5344000 0 6089200 5864300 8718000 4843300 4682500 4105400 4426500 4193600 3321500 4989300 301290 6198700 5595500 8628500 4943400 4956900 4212000 4333700 4042700 1 1 0 1 1 1 1 1 1 1 1 3764900 6665700 0 7103200 3965000 3705000 3394300 5412000 4533700 4921400 5311500 3505400 6221400 303600 7164800 3786700 4022400 3508100 5401700 4590000 4826700 5099700 1 1 0 1 1 1 1 1 1 1 1 725620000 325960000 399660000 11108 2310 10308 58313;58314 70700;70701 70701 2 LCNEEQELLR Unmodified 1302.6238 0.6238001 1587 Q13042;Q13042-3;Q13042-2;Q13042-4 CDC16 Cell division cycle protein 16 homolog yes no 0 0 0 0 By MS/MS 2 0 1 1 49.403 49.283 2 0.00019392 13992 20211116_3440_TMUAki_TMT10x_S_F2 87.942 66.995 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11109 1587 10309 58315 70702 70702 1 LCNIFSTK Unmodified 981.49535 0.49535211 625;1500 Q02880;Q02880-2;P11388;P11388-2;P11388-3;P11388-4 TOP2B;TOP2A DNA topoisomerase 2-beta;DNA topoisomerase 2-alpha no no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 60.264 60.001 2 0.00056581 19663 20211116_3429_TMUAki_TMT10x_P_F2 138.1 84.931 6678600 10128000 282980 12694000 16256000 16882000 9163600 8942900 8095700 8019100 9362200 6220500 9460500 951560 12831000 15426000 16761000 9632800 9465500 8327700 7869900 8992200 1 1 1 1 1 1 1 1 1 1 1 6678600 10128000 282980 12694000 16256000 16882000 9163600 8942900 8095700 8019100 9362200 6220500 9460500 951560 12831000 15426000 16761000 9632800 9465500 8327700 7869900 8992200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 711270000 711270000 0 11110 1500;625 10310 58316;58317 70703;70704 70703 2 LCPNSTGAEIR Unmodified 1216.587 0.58702067 945 P35998;P35998-2 PSMC2 26S protease regulatory subunit 7 yes no 0 0 0 0 By MS/MS By matching 4.5 0.5 1 1 1 1 35.497 35.598 2 3.3113E-11 8702 20211116_3431_TMUAki_TMT10x_P_F4 172.56 115.75 569090 920380 3684.8 1010700 1332400 1140500 732430 563600 573970 482390 744360 529910 859150 61306 1026600 1262700 1140900 769400 599710 596900 474480 712780 1 1 1 1 1 1 1 1 1 1 1 569090 920380 3684.8 1010700 1332400 1140500 732430 563600 573970 482390 744360 529910 859150 61306 1026600 1262700 1140900 769400 599710 596900 474480 712780 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57689000 44769000 12920000 11111 945 10311 58318;58319 70705 70705 1 LCQDLPCFSR Unmodified 1294.5798 0.5798268 142 O14929;O14929-2 HAT1 Histone acetyltransferase type B catalytic subunit yes no 0 0 0 0 By MS/MS 6 0 1 1 55.336 55.425 2 0.043059 16039 20211116_3445_TMUAki_TMT10x_S_F6 62.869 46.092 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11112 142 10312 58320 70706 70706 1 LCRPCQAAVEYYIK Unmodified 1769.8593 0.85929612 1927 Q5SNT2;Q5SNT2-2 TMEM201 Transmembrane protein 201 yes no 0 0 0 1 By MS/MS 1 0 1 1 52.847 52.558 3 0.021566 17129 20211116_3439_TMUAki_TMT10x_S_F1 52.662 41.491 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11113 1927 10313 58321 70707 70707 1 LCSAHGVLVPGGFGVR Unmodified 1624.8508 0.85078035 709 P17812;P17812-2 CTPS1 CTP synthase 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.17 1.57 1 2 1 2 4 2 53.142 53.047 3 1.0672E-07 17304 20211116_3430_TMUAki_TMT10x_P_F3 113.53 93.869 9844400 15925000 196550 17505000 15602000 19655000 12997000 12099000 11626000 11491000 13489000 9167500 14866000 1080000 17778000 14906000 19721000 13278000 12665000 11953000 11248000 12955000 5 5 5 5 5 5 5 5 5 5 5 8214200 12872000 182810 14590000 13519000 17934000 11159000 10292000 9929600 9559300 11295000 7649600 12017000 925680 14813000 12915000 17892000 11404000 10828000 10204000 9366300 10854000 4 4 4 4 4 4 4 4 4 4 4 1630200 3053300 13748 2914500 2082400 1720400 1838500 1807300 1696000 1932200 2193700 1518000 2848600 154300 2965200 1991400 1828200 1873200 1836900 1749300 1881900 2100800 1 1 1 1 1 1 1 1 1 1 1 1293700000 956990000 336690000 11114 709 10314 58322;58323;58324;58325;58326;58327 70708;70709;70710;70711;70712;70713 70709 6 LCSGPGIVGNVLVDPSAR Unmodified 1809.9407 0.94071757 3324 Q9Y5P6;Q9Y5P6-2 GMPPB Mannose-1-phosphate guanyltransferase beta yes no 0 0 0 0 By MS/MS 8 0 2 2 66.828 66.967 3 4.158E-07 21045 20211116_3436_TMUAki_TMT10x_P_F8 97.095 82.937 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11115 3324 10315 58328;58329 70714;70715 70715 2 LCSGVLGTVVHGK Unmodified 1325.7126 0.71255553 3346 Q9Y6C9 MTCH2 Mitochondrial carrier homolog 2 yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 51.482 51.346 3 3.3729E-12 16117 20211116_3429_TMUAki_TMT10x_P_F2 155.42 127.68 13851000 22205000 45465 24975000 20904000 23091000 15085000 19833000 17515000 17054000 20119000 12897000 20730000 1248300 25255000 19898000 23566000 15681000 20246000 17804000 16770000 19327000 5 5 3 5 5 5 5 5 5 5 5 7638800 11522000 7529.9 13828000 15817000 18617000 10360000 10814000 10093000 9956600 10966000 7112200 10760000 713650 14015000 15027000 18495000 10785000 11363000 10311000 9759500 10551000 3 3 1 3 3 3 3 3 3 3 3 6212500 10683000 37935 11147000 5086900 4473600 4725000 9018600 7421400 7097400 9153100 5784700 9970200 534650 11240000 4870800 5071200 4895100 8882600 7493400 7010900 8776000 2 2 2 2 2 2 2 2 2 2 2 1181000000 953240000 227720000 11116 3346 10316 58330;58331;58332 70716;70717;70718;70719;70720 70717 5 LCSLFYTNEEVAK Unmodified 1572.7494 0.74939455 1026 P43243;P43243-2 MATR3 Matrin-3 yes no 0 0 0 0 By MS/MS By MS/MS 6.13 1.15 1 4 4 4 2 9 6 69.198 69.324 2;3 8.4106E-65 21755 20211116_3445_TMUAki_TMT10x_S_F6 318.35 269.55 147910000 244350000 527030 264870000 181120000 214760000 156160000 167540000 134160000 164870000 184290000 137710000 228080000 11880000 268010000 172980000 220810000 159020000 172650000 139220000 161130000 176230000 17 17 7 17 17 17 17 17 17 17 17 70582000 115000000 304050 120070000 99738000 145570000 91476000 77884000 63624000 77703000 84534000 65718000 107320000 6212000 122520000 95422000 145200000 92358000 82597000 66687000 75897000 80899000 9 9 4 9 9 9 9 9 9 9 9 77329000 129350000 222980 144800000 81381000 69188000 64681000 89656000 70533000 87165000 99755000 71994000 120750000 5667600 145500000 77560000 75608000 66663000 90049000 72536000 85233000 95326000 8 8 3 8 8 8 8 8 8 8 8 27255000000 14921000000 12335000000 11117 1026 10317 58333;58334;58335;58336;58337;58338;58339;58340;58341;58342;58343;58344;58345;58346;58347 70721;70722;70723;70724;70725;70726;70727;70728;70729;70730;70731;70732;70733;70734;70735;70736;70737;70738;70739 70736 19 LCSLLLQEHFGEIVEK Unmodified 1913.9921 0.99208444 2674 Q9BUI4 POLR3C DNA-directed RNA polymerase III subunit RPC3 yes yes 0 0 0 0 By MS/MS 6 0 1 1 76.075 76.03 3 0.013245 24494 20211116_3445_TMUAki_TMT10x_S_F6 48.314 35.547 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11118 2674 10318 58348 70740 70740 1 LCTFILK Unmodified 893.50446 0.50446024 1231 P55010 EIF5 Eukaryotic translation initiation factor 5 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 67.593 67.131 2 0.0060531 24195 20211116_3441_TMUAki_TMT10x_S_F3 105.39 43.554 3387800 6493500 46315 5285700 4172700 4505200 4414100 5763900 5209300 5563300 5494700 3154700 6054600 335030 5465900 4009800 4666000 4489400 5790800 5274900 5441600 5291700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3387800 6493500 46315 5285700 4172700 4505200 4414100 5763900 5209300 5563300 5494700 3154700 6054600 335030 5465900 4009800 4666000 4489400 5790800 5274900 5441600 5291700 1 1 1 1 1 1 1 1 1 1 1 540040000 0 540040000 11119 1231 10319 58349;58350 70741;70742 70742 2 LCTQLEGLQSTVTGHVER Unmodified 2027.0106 0.010588046 1995 Q6P2E9;Q6P2E9-2 EDC4 Enhancer of mRNA-decapping protein 4 yes no 0 0 0 0 By MS/MS 5 0 1 1 57.387 57.521 3 0.083306 16594 20211116_3444_TMUAki_TMT10x_S_F5 32.305 17.952 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11120 1995 10320 58351 70743 70743 1 LCTSATESEVAR Unmodified 1322.6136 0.61362935 891 P31930 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 0 0 0 0 By MS/MS 3 0 1 1 34.809 34.569 2 7.8371E-06 10845 20211116_3441_TMUAki_TMT10x_S_F3 104.95 86.791 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11121 891 10321 58352 70744 70744 1 LCTSVTESEVAR Unmodified 1350.6449 0.64492948 335 O75439 PMPCB Mitochondrial-processing peptidase subunit beta yes yes 0 0 0 0 By MS/MS 3 0 1 1 39.908 39.621 2 5.7967E-28 12880 20211116_3441_TMUAki_TMT10x_S_F3 227.27 173.77 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11122 335 10322 58353 70745 70745 1 LCVLHEK Unmodified 897.47422 0.47422274 38 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS 6.17 0.898 2 1 3 5 1 35.325 35.513 3 0.0070447 9614 20211116_3433_TMUAki_TMT10x_P_F5 89.142 36.66 + 4620300 6098200 22749 5976800 6390400 6349400 5420300 5819500 5384100 5359700 5445900 4302000 5689900 411120 6111400 6103200 6433400 5547600 5929800 5481200 5253500 5251500 8 8 5 8 8 8 8 8 8 8 8 3752700 5021500 22749 4954300 5580300 5887600 4802600 4310100 4051200 4108600 4345300 3494200 4685400 342640 5072900 5331500 5904800 4888900 4455800 4164700 4021000 4182700 7 7 5 7 7 7 7 7 7 7 7 867620 1076700 0 1022500 810070 461810 617650 1509400 1332800 1251100 1100600 807820 1004500 68486 1038500 771720 528590 658710 1474000 1316400 1232500 1068900 1 1 0 1 1 1 1 1 1 1 1 305950000 211000000 94958000 11123 38 10323 58354;58355;58356;58357;58358;58359 70746;70747;70748;70749;70750;70751;70752;70753;70754 70746 9 LCYDAFTENMAGENQLLER Oxidation (M) 2289.0042 0.0041820395 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 0 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 67.688 67.466 3 2.1884E-14 23230 20211116_3430_TMUAki_TMT10x_P_F3 140.89 121.34 11392000 19131000 70152 17418000 12762000 20574000 14235000 14709000 13821000 14747000 15412000 10607000 17845000 982840 17937000 12275000 20633000 14350000 15253000 14135000 14401000 14818000 6 6 2 6 6 6 6 6 6 6 6 8543500 14119000 70152 12738000 9324000 17359000 10759000 10481000 10190000 10678000 11310000 7955200 13169000 759120 13162000 8979000 17244000 10821000 11009000 10431000 10421000 10876000 4 4 2 4 4 4 4 4 4 4 4 2848400 5012600 0 4679300 3438200 3216000 3476000 4228300 3631300 4068400 4101300 2652000 4676000 223720 4775300 3296300 3389200 3528700 4243100 3704100 3980000 3941800 2 2 0 2 2 2 2 2 2 2 2 1674300000 1176300000 498020000 11124 1433 10324 58360;58361;58362 70755;70756;70757;70758;70759;70760 70755 1938 6 LCYDAFTENMAGENQLLER Unmodified 2273.0093 0.0092674174 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 75.719 75.64 3 3.5939E-18 27534 20211116_3441_TMUAki_TMT10x_S_F3 156.13 146.44 9023700 15298000 162880 13775000 9971500 14566000 11921000 10640000 9599000 10646000 11860000 8403100 14269000 899100 14172000 9619200 14702000 11919000 11016000 9947200 10397000 11371000 5 5 4 5 5 5 5 5 5 5 5 5237300 8393400 83998 7851400 5148600 10075000 6818900 6419000 5417800 6174300 6831800 4877000 7829900 511250 8081300 4983800 10045000 6786000 6703500 5623200 6040200 6546600 3 3 3 3 3 3 3 3 3 3 3 3786400 6904400 78881 5923600 4823000 4490900 5102600 4220700 4181200 4471800 5028000 3526000 6438900 387850 6090900 4635400 4657300 5132600 4312500 4324000 4357000 4824100 2 2 1 2 2 2 2 2 2 2 2 1738900000 1016600000 722340000 11125 1433 10324 58363;58364;58365;58366 70761;70762;70763;70764;70765 70764 5 LCYGLNMDFVDPAQITMK 2 Oxidation (M) 2146.9737 0.97373353 791 P23921 RRM1 Ribonucleoside-diphosphate reductase large subunit yes yes 0 0 2 0 By MS/MS By MS/MS 7 0 2 1 1 76.646 76.741 3 0.0037342 26884 20211116_3446_TMUAki_TMT10x_S_F7 58.427 48.896 7763600 12849000 22460 11344000 8359200 11197000 9036600 7337300 6486000 7182600 8659600 7228700 11984000 646840 11677000 8031900 11329000 9051800 7650200 6787100 7021200 8286400 2 2 1 2 2 2 2 2 2 2 2 3557500 5797000 0 5328000 3277500 6793600 4117600 3437100 3167900 3304700 4203800 3312200 5407400 264930 5490400 3162000 6755000 4103300 3660100 3301100 3233000 4023200 1 1 0 1 1 1 1 1 1 1 1 4206200 7052300 22460 6016500 5081800 4403300 4919000 3900200 3318100 3877900 4455800 3916500 6576700 381910 6186800 4869900 4573900 4948500 3990200 3486000 3788300 4263100 1 1 1 1 1 1 1 1 1 1 1 1503300000 509130000 994150000 11126 791 10325 58367;58368 70766 70766 937;938 1 LCYVALDFENEMATAASSSSLEK Oxidation (M) 2551.1458 0.14582048 1414 P68133;P68032;P62736;P63267;P63267-2 ACTA1;ACTC1;ACTA2;ACTG2 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle yes no 0 0 1 0 By MS/MS 4 0 1 1 82.928 82.922 4 4.7987E-11 28431 20211116_3442_TMUAki_TMT10x_S_F4 106.03 92.294 400860 701120 17919 634050 556500 417640 548780 337250 278800 307220 466300 373370 653970 52114 648340 534490 437000 548690 346050 302100 301280 444020 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 400860 701120 17919 634050 556500 417640 548780 337250 278800 307220 466300 373370 653970 52114 648340 534490 437000 548690 346050 302100 301280 444020 1 1 1 1 1 1 1 1 1 1 1 440040000 0 440040000 11127 1414 10326 58369 70767 70767 1898 1 LCYVALDFEQEMAMVASSSSLEK Unmodified 2607.1907 0.19066218 595 P0CG39 POTEJ POTE ankyrin domain family member J yes yes 0 0 0 0 By MS/MS 6 0 2 2 65.934 65.878 3 1.0316E-08 20384 20211116_3445_TMUAki_TMT10x_S_F6 100.28 91.892 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11128 595 10327 58370;58371 70768;70769 70769 2 LCYVALDFEQEMATAASSSSLEK Oxidation (M) 2565.1615 0.16147054 1276;1406 P60709;Q6S8J3;P63261 ACTB;POTEE;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 1 0 By MS/MS By MS/MS 4.63 1.99 34 81 88 73 72 99 141 9 259 338 68.11 68.115 2;3;4 3.6337E-56 27435 20211116_3430_TMUAki_TMT10x_P_F3 220.4 192.75 823610000 1482100000 9250900 1143400000 941400000 1443900000 1028200000 1017700000 1023500000 1080600000 1108500000 766870000 1381700000 65280000 1194900000 904870000 1442800000 1038200000 1058100000 1044500000 1052700000 1066700000 797 797 326 796 797 797 797 794 796 797 797 431870000 753320000 3755800 580440000 383450000 896190000 458560000 515700000 519170000 539320000 556920000 402100000 702280000 31454000 609080000 369520000 884950000 463080000 544230000 526850000 525750000 536070000 387 387 156 387 387 387 387 386 387 387 387 391740000 728770000 5495100 562990000 557950000 547690000 569620000 501990000 504380000 541240000 551560000 364760000 679400000 33827000 585820000 535360000 557870000 575160000 513870000 517650000 526980000 530610000 410 410 170 409 410 410 410 408 409 410 410 510870000000 253980000000 256880000000 11129 1276;1406 10328 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70878 1722 833 LCYVALDFEQEMATAASSSSLEK Unmodified 2549.1666 0.16655592 1276;1406 P60709;Q6S8J3;P63261 ACTB;POTEE;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS 4.2 1.89 25 41 46 55 48 39 36 7 131 166 90.168 90.154 2;3;4 9.843E-117 28751 20211116_3446_TMUAki_TMT10x_S_F7 353.82 330.46 1249800000 2076700000 9942500 2007200000 1330000000 1048800000 1484900000 349140000 257920000 480750000 1142600000 1163700000 1937500000 102620000 2038200000 1279300000 1111800000 1460100000 394230000 347480000 464100000 1074900000 461 461 221 461 461 461 461 461 461 461 461 571140000 938660000 3748400 925520000 500820000 596720000 611980000 167290000 128150000 226860000 524880000 531800000 875820000 43898000 940190000 483100000 618530000 599970000 193540000 165620000 219110000 494050000 219 219 110 219 219 219 219 219 219 219 219 678700000 1138000000 6194100 1081700000 829210000 452060000 872910000 181850000 129770000 253880000 617750000 631940000 1061700000 58722000 1098000000 796250000 493300000 860140000 200690000 181850000 244990000 580810000 242 242 111 242 242 242 242 242 242 242 242 582430000000 282750000000 299680000000 11130 1276;1406 10328 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71603;71604;71605;71606;71607;71608;71609;71610;71611;71612;71613;71614;71615;71616;71617;71618;71619;71620;71621;71622;71623;71624;71625;71626;71627;71628;71629;71630;71631;71632;71633;71634;71635;71636;71637;71638;71639;71640;71641;71642;71643;71644;71645;71646;71647;71648;71649;71650;71651;71652;71653;71654;71655;71656;71657;71658;71659;71660;71661;71662;71663;71664;71665;71666;71667;71668;71669;71670;71671;71672;71673;71674;71675;71676;71677;71678;71679;71680;71681;71682;71683;71684;71685;71686;71687;71688;71689;71690;71691;71692;71693;71694;71695;71696;71697;71698;71699;71700;71701;71702;71703;71704;71705;71706;71707;71708;71709;71710;71711;71712;71713;71714;71715;71716;71717;71718;71719;71720;71721;71722;71723;71724;71725;71726;71727;71728;71729;71730;71731;71732;71733;71734;71735;71736;71737;71738;71739;71740;71741;71742;71743;71744;71745;71746;71747;71748;71749;71750;71751;71752;71753;71754;71755;71756;71757;71758;71759;71760;71761;71762;71763;71764;71765;71766;71767;71768;71769;71770;71771;71772;71773;71774;71775;71776;71777;71778;71779;71780;71781;71782;71783;71784;71785;71786;71787;71788;71789;71790;71791;71792;71793;71794;71795;71796;71797;71798;71799;71800;71801;71802;71803;71804;71805;71806;71807;71808;71809;71810;71811;71812;71813;71814;71815;71816;71817;71818;71819;71820;71821;71822;71823;71824;71825;71826;71827;71828;71829;71830;71831;71832;71833;71834;71835;71836;71837;71838;71839;71840;71841;71842;71843;71844;71845;71846;71847;71848;71849;71850;71851;71852;71853;71854;71855;71856;71857;71858;71859;71860;71861;71862;71863;71864;71865;71866;71867;71868;71869;71870;71871;71872;71873;71874;71875;71876;71877;71878;71879;71880;71881;71882;71883;71884;71885;71886;71887;71888;71889;71890;71891;71892;71893;71894;71895;71896;71897;71898;71899;71900;71901;71902;71903;71904;71905;71906;71907;71908;71909;71910;71911;71912;71913;71914;71915;71916;71917;71918;71919;71920;71921;71922;71923;71924;71925;71926;71927;71928;71929;71930;71931;71932;71933;71934;71935;71936;71937;71938;71939;71940;71941;71942;71943;71944;71945;71946;71947;71948;71949;71950;71951;71952;71953;71954;71955;71956;71957;71958;71959;71960;71961;71962;71963;71964;71965;71966;71967;71968;71969;71970;71971;71972;71973;71974;71975;71976;71977;71978;71979;71980;71981;71982;71983;71984;71985;71986;71987;71988;71989;71990;71991;71992;71993;71994;71995;71996;71997;71998;71999;72000;72001;72002;72003;72004;72005;72006;72007;72008;72009;72010;72011;72012;72013;72014;72015;72016;72017;72018;72019;72020;72021;72022;72023;72024;72025;72026;72027;72028;72029;72030;72031;72032;72033;72034;72035;72036;72037;72038;72039;72040;72041;72042;72043;72044;72045;72046;72047;72048;72049;72050;72051;72052;72053;72054;72055;72056;72057;72058;72059;72060;72061;72062;72063;72064;72065;72066;72067;72068;72069;72070;72071;72072;72073;72074;72075;72076;72077;72078;72079;72080;72081;72082;72083;72084 72049 482 LCYVALDFEQEMVR Oxidation (M) 1787.8222 0.82224192 1911 Q562R1 ACTBL2 Beta-actin-like protein 2 yes yes 0 0 1 0 By MS/MS By MS/MS 3.46 2.13 3 3 1 2 1 1 2 6 7 85.217 85.216 2 2.311E-09 31889 20211116_3429_TMUAki_TMT10x_P_F2 118.26 100.4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11131 1911 10329 59266;59267;59268;59269;59270;59271;59272;59273;59274;59275;59276;59277;59278 72085;72086;72087;72088;72089;72090;72091;72092;72093;72094;72095;72096;72097 72086 2508 13 LCYVGYNIEQEQK Unmodified 1642.7661 0.76610724 1297 P61160;P61160-2 ACTR2 Actin-related protein 2 yes no 0 0 0 0 By MS/MS 5 1 1 1 2 58.488 58.587 3 1.0373E-05 17868 20211116_3431_TMUAki_TMT10x_P_F4 89.356 74.666 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11132 1297 10330 59279;59280 72098;72099 72098 2 LCYYIGATDDAATK Unmodified 1560.713 0.71300904 1238 P55145 MANF Mesencephalic astrocyte-derived neurotrophic factor yes yes 0 0 0 0 By MS/MS 6 0.816 1 1 1 3 60.82 61.126 2;3 1.6582E-13 19191 20211116_3433_TMUAki_TMT10x_P_F5 129.82 111.07 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11133 1238 10331 59281;59282;59283 72100;72101;72102 72100 3 LDAAMAGHIYVSGSAPSFPR Unmodified 2045.9993 0.99929508 56 CON__Q3ZBS7 yes yes 0 0 0 0 By MS/MS 1 0 1 1 61.746 61.746 3 2.0903E-07 18814 20211116_3428_TMUAki_TMT10x_P_F1 88.574 69.978 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11134 56 10332 59284 72103 72103 1 LDAAMAGHIYVSGSAPSFPR Oxidation (M) 2061.9942 0.9942097 56 CON__Q3ZBS7 yes yes 0 0 1 0 By MS/MS By MS/MS 6.6 1.85 1 2 2 3 2 53.904 54.221 3 7.1042E-19 17021 20211116_3435_TMUAki_TMT10x_P_F7 157.22 145.19 + 9968300 20356000 163210 17713000 16046000 22731000 12902000 19233000 20152000 19590000 16955000 9282300 18985000 1006800 18332000 15313000 22769000 13475000 19742000 20071000 19118000 16454000 5 5 4 5 5 5 5 5 5 5 5 5323500 10221000 93058 9212300 10248000 15457000 8138300 9620900 10205000 10393000 8269600 4957400 9533900 597060 9562700 9779000 15230000 8429300 10100000 10223000 10118000 8037300 3 3 3 3 3 3 3 3 3 3 3 4644800 10135000 70152 8500500 5798100 7273800 4763200 9611900 9947400 9197000 8684900 4324800 9450800 409690 8769000 5534000 7538300 5046200 9642300 9848100 8999300 8417100 2 2 1 2 2 2 2 2 2 2 2 7049500000 4029700000 3019700000 11135 56 10332 59285;59286;59287;59288;59289 72104;72105;72106;72107;72108;72109 72105 25 6 LDADYPLR Unmodified 961.4869 0.48689592 222 O43583 DENR Density-regulated protein yes yes 0 0 0 0 By MS/MS 3 0 1 1 48.382 48.029 2 0.088946 16402 20211116_3441_TMUAki_TMT10x_S_F3 50.607 26.404 1818300 3143400 5537.1 3436400 1672400 1372500 1562600 2767200 2814000 2522100 2856900 1693100 2934300 153870 3454200 1601200 1556900 1629500 2735800 2809500 2473300 2754600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1818300 3143400 5537.1 3436400 1672400 1372500 1562600 2767200 2814000 2522100 2856900 1693100 2934300 153870 3454200 1601200 1556900 1629500 2735800 2809500 2473300 2754600 1 1 1 1 1 1 1 1 1 1 1 43888000 0 43888000 11136 222 10333 59290 72110 72110 1 LDAEPRPPPTQEAA Unmodified 1490.7365 0.73652168 3231 Q9Y285;Q9Y285-2 FARSA Phenylalanine--tRNA ligase alpha subunit yes no 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 38.156 38.067 2 1.6665E-13 12402 20211116_3441_TMUAki_TMT10x_S_F3 138 111.88 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11137 3231 10334 59291;59292 72111;72112 72112 2 LDALSNFHFIPKPPVPEIK Unmodified 2161.1936 0.19356144 102 O00566 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0 2 1 1 77.17 77.071 4 3.55E-08 27086 20211116_3430_TMUAki_TMT10x_P_F3 105.67 94.855 6341000 11380000 144710 9511800 7311300 11641000 7677600 7719700 7689500 7622700 8733300 5905200 10611000 674160 9867300 7028400 11639000 7769000 8043900 7859300 7448800 8392400 2 2 2 2 2 2 2 2 2 2 2 2620600 4816800 120490 3647500 2568500 6408700 2786100 3195200 3022000 2914800 3821000 2440900 4490200 328830 3845000 2475600 6286200 2822000 3402500 3092400 2858300 3661300 1 1 1 1 1 1 1 1 1 1 1 3720400 6562700 24212 5864200 4742800 5232000 4891500 4524500 4667500 4707900 4912200 3464200 6121100 345330 6022400 4552800 5353100 4947000 4641400 4766900 4590500 4731100 1 1 1 1 1 1 1 1 1 1 1 2352000000 1055700000 1296400000 11138 102 10335 59293;59294 72113;72114 72113 2 LDALVAEEHLTVDAR Unmodified 1650.8577 0.85769944 3157 Q9UKK9 NUDT5 ADP-sugar pyrophosphatase yes yes 0 0 0 0 By MS/MS 2 0 1 1 63.104 62.815 3 1.1959E-06 20870 20211116_3429_TMUAki_TMT10x_P_F2 106.6 85.045 1693800 2573500 30764 2468800 1866600 3248100 2132800 1881300 1887900 1866700 2079000 1577300 2401000 171520 2537600 1798300 3230200 2141900 1981300 1938100 1823800 1999600 1 1 1 1 1 1 1 1 1 1 1 1693800 2573500 30764 2468800 1866600 3248100 2132800 1881300 1887900 1866700 2079000 1577300 2401000 171520 2537600 1798300 3230200 2141900 1981300 1938100 1823800 1999600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 288620000 288620000 0 11139 3157 10336 59295 72115 72115 1 LDAPVDYFYRPETQHR Unmodified 2005.9646 0.96462413 3325 Q9Y5Q8;Q9Y5Q8-2;Q9Y5Q8-3 GTF3C5 General transcription factor 3C polypeptide 5 yes no 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 51.867 51.983 4 6.2883E-06 14631 20211116_3445_TMUAki_TMT10x_S_F6 100.41 90.661 4855600 8413900 35874 9139200 6419300 6400300 5156600 6860800 6486900 5584000 6640500 4521200 7853700 450490 9231300 6125100 6699500 5337800 6914200 6546500 5506300 6401100 3 3 2 3 3 3 3 3 3 3 3 1467300 2371100 148.59 2609100 2985400 3486100 2141900 2127000 2101800 1675100 1957400 1366200 2213400 143050 2658000 2841400 3466800 2215500 2217700 2134900 1654600 1892700 1 1 1 1 1 1 1 1 1 1 1 3388300 6042800 35726 6530000 3433900 2914200 3014700 4733800 4385100 3908900 4683200 3155100 5640400 307450 6573200 3283700 3232700 3122300 4696500 4411600 3851600 4508400 2 2 1 2 2 2 2 2 2 2 2 669020000 348960000 320060000 11140 3325 10337 59296;59297 72116;72117;72118 72117 3 LDASAAAAPASLPPSSPAAPIATFSLLPAGGAPTVFSFGSSSLK Unmodified 4097.1361 0.13611272 941 P35658;P35658-3;P35658-4;P35658-2;P35658-5 NUP214 Nuclear pore complex protein Nup214 yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 81.902 81.901 4 3.3017E-18 27469 20211116_3431_TMUAki_TMT10x_P_F4 107.77 101.75 859140 1279000 0 1311800 832080 1070500 951050 582540 634680 705720 875800 799810 1193600 53215 1332400 799680 1094500 948680 620600 668080 684170 837390 2 2 0 2 2 2 2 2 2 2 2 524100 747210 0 793150 431880 739600 500840 318270 330210 371470 459990 487860 697400 25492 805100 414760 747290 499130 346450 348010 360610 439720 1 1 0 1 1 1 1 1 1 1 1 335040 531810 0 518670 400190 330930 450210 264270 304470 334250 415810 311950 496190 27722 527250 384920 347210 449540 274150 320080 323560 397670 1 1 0 1 1 1 1 1 1 1 1 496270000 338420000 157860000 11141 941 10338 59298;59299 72119;72120 72119 2 LDDCGLTEAR Unmodified 1148.5132 0.51318702 651 P13489 RNH1 Ribonuclease inhibitor yes yes 0 0 0 0 By MS/MS 3 0 1 1 38.846 38.889 2 0.073186 11486 20211116_3430_TMUAki_TMT10x_P_F3 58.916 36.424 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11142 651 10339 59300 72121 72121 1 LDDLALLEDLEK Unmodified 1385.729 0.72897668 1641 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 3 1 2 80.411 80.393 2 9.8198E-12 26457 20211116_3428_TMUAki_TMT10x_P_F1 169.52 116.05 6740300 10827000 16486 11171000 7160100 8017500 7447200 4117000 4782200 5398300 7412100 6275900 10104000 571320 11325000 6873100 8274500 7456500 4421100 5075100 5219500 7068700 2 2 1 2 2 2 2 2 2 2 2 3491300 5348200 16486 5683500 3742600 5049200 3433000 1983000 2488100 2763400 3878900 3250900 4991700 308340 5765000 3581800 5114000 3469200 2194300 2621900 2666700 3698800 1 1 1 1 1 1 1 1 1 1 1 3249000 5478400 0 5487500 3417400 2968300 4014200 2134100 2294100 2634900 3533200 3025100 5112000 262980 5559800 3291200 3160500 3987300 2226900 2453100 2552800 3370000 1 1 0 1 1 1 1 1 1 1 1 1115400000 619480000 495960000 11143 1641 10340 59301;59302;59303 72122;72123;72124 72122 3 LDDPSCPRPECYR Unmodified 1663.7083 0.70827479 993 P41091 EIF2S3 Eukaryotic translation initiation factor 2 subunit 3 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 34.111 33.966 3 1.0057E-14 7987 20211116_3431_TMUAki_TMT10x_P_F4 169.17 162.13 1693200 2547200 19683 3940300 4824300 3632800 2233400 1825700 2175600 1474900 2568600 1576700 2382000 200310 3916700 4561700 3679300 2399100 1937000 2229800 1454900 2465600 3 3 2 3 3 3 3 3 3 3 3 1228200 1839800 19683 2810800 4425100 3306700 1786500 1315300 1603200 1073800 1847900 1143700 1720300 164940 2806300 4177900 3293300 1944400 1430600 1647700 1058700 1775000 2 2 2 2 2 2 2 2 2 2 2 465070 707460 0 1129400 399190 326110 446940 510460 572400 401060 720630 433010 661710 35367 1110400 383820 385910 454740 506420 582090 396200 690580 1 1 0 1 1 1 1 1 1 1 1 197800000 149830000 47978000 11144 993 10341 59304;59305;59306 72125;72126;72127 72126 3 LDDSFVR Unmodified 850.41848 0.418482 2590 Q99615;Q99615-2 DNAJC7 DnaJ homolog subfamily C member 7 yes no 0 0 0 0 By MS/MS 3 0 1 1 45.403 45.062 2 0.036697 15111 20211116_3441_TMUAki_TMT10x_S_F3 71.296 49.165 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11145 2590 10342 59307 72128 72128 1 LDDTVHVVIATPGR Unmodified 1491.8045 0.80454166 810 P26196 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 50.843 50.992 3 1.2984E-06 13916 20211116_3444_TMUAki_TMT10x_S_F5 113.8 99.379 21228000 37386000 96343 37172000 28943000 29977000 26041000 28641000 25032000 26259000 30474000 19766000 34884000 1939600 37829000 27684000 30952000 26535000 29116000 25703000 25744000 29229000 6 6 5 6 6 6 6 6 6 6 6 8132100 14377000 39254 13958000 14724000 17859000 11494000 11608000 10205000 10019000 11914000 7571900 13414000 784900 14328000 14038000 17813000 11788000 12070000 10499000 9850500 11440000 3 3 2 3 3 3 3 3 3 3 3 13096000 23008000 57089 23214000 14219000 12117000 14547000 17033000 14827000 16240000 18560000 12194000 21470000 1154700 23502000 13646000 13139000 14747000 17047000 15204000 15893000 17788000 3 3 3 3 3 3 3 3 3 3 3 4131400000 2037900000 2093500000 11146 810 10343 59308;59309;59310;59311;59312;59313 72129;72130;72131;72132;72133;72134 72133 6 LDEIYVAGLVAHSDLDER Unmodified 2014.0007 0.0007348666 271;272 O60506;O60506-2;O60506-3;O60506-4 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 0 By MS/MS By MS/MS 2.75 0.829 2 1 1 2 2 76.32 76.232 3 2.2089E-17 26217 20211116_3429_TMUAki_TMT10x_P_F2 145.48 126.4 8055300 14527000 89169 12130000 11328000 10651000 9986600 8658000 8139400 9399000 10705000 7500900 13546000 796780 12522000 10834000 10897000 10143000 8925600 8452300 9149000 10248000 4 4 4 4 4 4 4 4 4 4 4 1704200 2995300 5589.6 2719700 1602700 3555800 2054800 1864400 2045100 2108900 2244600 1586800 2793900 145080 2806500 1548500 3532800 2060400 1988300 2088100 2049600 2159100 1 1 1 1 1 1 1 1 1 1 1 6351100 11531000 83579 9410300 9725400 7094800 7931800 6793500 6094300 7290100 8460900 5914100 10752000 651700 9715200 9285200 7363800 8082500 6937300 6364300 7099400 8088600 3 3 3 3 3 3 3 3 3 3 3 1520300000 832860000 687410000 11147 271;272 10344 59314;59315;59316;59317 72135;72136;72137;72138;72139 72135 5 LDEREAGITEK Unmodified 1259.6357 0.635745 1271 P60174;P60174-1;P60174-4 TPI1 Triosephosphate isomerase yes no 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 30.584 30.494 3 9.4491E-06 11776 20211116_3441_TMUAki_TMT10x_S_F3 112.42 85.014 1483500 2589800 0 2375400 2181800 1369100 1791300 1664400 1710700 1538300 2186500 1381300 2415800 125330 2423400 2081700 1463400 1834900 1673600 1760800 1507600 2094500 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1483500 2589800 0 2375400 2181800 1369100 1791300 1664400 1710700 1538300 2186500 1381300 2415800 125330 2423400 2081700 1463400 1834900 1673600 1760800 1507600 2094500 2 2 0 2 2 2 2 2 2 2 2 165220000 0 165220000 11148 1271 10345 59318;59319 72140;72141 72141 2 LDFNLIR Unmodified 889.50215 0.50215205 892 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 65.175 65.507 2 0.0017576 22190 20211116_3446_TMUAki_TMT10x_S_F7 133.81 48.453 47013000 76760000 0 75063000 58842000 83040000 38278000 69986000 53677000 56863000 62705000 43760000 71619000 2387100 76816000 55795000 83810000 40379000 71423000 54254000 56076000 60210000 4 4 0 4 4 4 4 4 4 4 4 24191000 36087000 0 36881000 33504000 62145000 19703000 38319000 23940000 29501000 30986000 22517000 33676000 1169100 37946000 31715000 61215000 20839000 39899000 24419000 29175000 29673000 2 2 0 2 2 2 2 2 2 2 2 22822000 40674000 0 38182000 25338000 20895000 18575000 31667000 29737000 27362000 31719000 21244000 37944000 1218000 38870000 24079000 22595000 19540000 31524000 29834000 26900000 30537000 2 2 0 2 2 2 2 2 2 2 2 2999100000 1776100000 1222900000 11149 892 10346 59320;59321;59322 72142;72143;72144;72145 72144 4 LDFNPDRYLQDNPASGEK Unmodified 2077.9705 0.97049737 1867 Q16850;Q16850-2 CYP51A1 Lanosterol 14-alpha demethylase yes no 0 0 0 1 By MS/MS 6 0 1 1 63.519 63.486 3 3.5433E-06 19363 20211116_3445_TMUAki_TMT10x_S_F6 96.391 79.512 3054500 5354800 34320 4704100 4317400 3257600 3026700 2754500 2678500 2555600 3736700 2844300 4994200 302910 4823300 4109400 3396500 3126800 2820000 2777700 2504100 3571900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3054500 5354800 34320 4704100 4317400 3257600 3026700 2754500 2678500 2555600 3736700 2844300 4994200 302910 4823300 4109400 3396500 3126800 2820000 2777700 2504100 3571900 1 1 1 1 1 1 1 1 1 1 1 154610000 0 154610000 11150 1867 10347 59323 72146 72146 1 LDFSMAEALNQEFLATR Oxidation (M) 1970.9408 0.94077715 995 P41219;P41219-2 PRPH Peripherin yes no 0 0 1 0 By MS/MS 6 0 1 1 78.494 78.476 3 2.9471E-07 25483 20211116_3445_TMUAki_TMT10x_S_F6 103.39 92.447 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11151 995 10348 59324 72147 72147 1281 1 LDGERPGPNR Unmodified 1109.5578 0.55776945 1621 Q13330;Q13330-3 MTA1 Metastasis-associated protein MTA1 yes no 0 0 0 1 By MS/MS 3 0 1 1 27.611 27.327 3 0.0017519 8022 20211116_3441_TMUAki_TMT10x_S_F3 74.533 55.751 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11152 1621 10349 59325 72148 72148 1 LDGLVETPTGYIESLPR Unmodified 1858.9676 0.96764382 1240 P55209;P55209-2;P55209-3 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.78 1.57 1 1 4 5 6 6 4 11 16 71.549 71.543 2;3 2.8252E-69 26121 20211116_3442_TMUAki_TMT10x_S_F4 297.91 264.82 170120000 282200000 573610 254520000 159690000 233630000 194000000 134330000 141820000 151490000 193060000 158380000 263220000 11778000 261290000 153890000 237060000 193370000 142100000 148380000 147240000 184650000 31 31 9 31 31 31 31 31 31 31 31 91985000 150440000 350730 135800000 77651000 147650000 98222000 75756000 77931000 81648000 103530000 85641000 140320000 6609400 139750000 74919000 148070000 97927000 80829000 81077000 79499000 99080000 13 13 4 13 13 13 13 13 13 13 13 78130000 131760000 222880 118710000 82043000 85978000 95778000 58575000 63894000 69839000 89527000 72742000 122900000 5168800 121540000 78975000 88992000 95447000 61275000 67306000 67744000 85570000 18 18 5 18 18 18 18 18 18 18 18 70599000000 35474000000 35125000000 11153 1240 10350 59326;59327;59328;59329;59330;59331;59332;59333;59334;59335;59336;59337;59338;59339;59340;59341;59342;59343;59344;59345;59346;59347;59348;59349;59350;59351;59352 72149;72150;72151;72152;72153;72154;72155;72156;72157;72158;72159;72160;72161;72162;72163;72164;72165;72166;72167;72168;72169;72170;72171;72172;72173;72174;72175;72176;72177;72178;72179;72180 72164 32 LDGQTPHDERQDSINAYNEPNSTK Unmodified 2728.2325 0.23247873 260 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 0 0 0 1 By MS/MS 4 0 1 1 36.288 36.316 4 1.2489E-30 8887 20211116_3431_TMUAki_TMT10x_P_F4 179.5 167.54 305780 456070 4989.3 921320 2117400 1386800 567560 602860 890500 361610 654310 284750 427310 55374 914000 1991600 1366400 666740 645280 883420 363110 638500 1 1 1 1 1 1 1 1 1 1 1 305780 456070 4989.3 921320 2117400 1386800 567560 602860 890500 361610 654310 284750 427310 55374 914000 1991600 1366400 666740 645280 883420 363110 638500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 273960000 273960000 0 11154 260 10351 59353 72181 72181 1 LDGQTPHEEREEAIEAFNAPNSSK Unmodified 2668.2365 0.23650148 844 P28370-2 SMARCA1 Probable global transcription activator SNF2L1 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 1 2 46.527 46.379 4 1.5694E-37 14155 20211116_3429_TMUAki_TMT10x_P_F2 181.75 164.48 4454900 7727400 69409 8900000 4886100 5327100 3550300 6343600 5700400 5291700 6488600 4148200 7214800 413650 8943200 4653900 5670200 3737700 6367000 5733000 5211500 6235000 4 4 3 4 4 4 4 4 4 4 4 1120800 1755000 0 1907400 2037100 2651800 1372300 1702100 1433300 1221700 1563100 1043400 1638200 79339 1946300 1934800 2634200 1428600 1764100 1460100 1213000 1503800 1 1 0 1 1 1 1 1 1 1 1 3334100 5972300 69409 6992600 2849000 2675400 2178100 4641500 4267100 4070000 4925600 3104900 5576600 334310 6996900 2719100 3036000 2309100 4602900 4273000 3998500 4731100 3 3 3 3 3 3 3 3 3 3 3 641870000 270340000 371530000 11155 844 10352 59354;59355;59356 72182;72183;72184;72185 72182 4 LDHKFDLMYAK Oxidation (M) 1395.6857 0.68567208 1417;2044 P68363;P68363-2;P68366;P68366-2;A6NHL2;A6NHL2-2;Q71U36;Q71U36-2;Q9BQE3;P0DPH8;P0DPH7;Q9NY65;Q9NY65-2 TUBA1B;TUBA4A;TUBAL3;TUBA1A;TUBA1C;TUBA8 Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-8 chain no no 0 0 1 1 By MS/MS By MS/MS 5.8 2.4 2 1 1 3 4 4 8 7 49.992 50.151 3;4 9.4522E-05 14645 20211116_3433_TMUAki_TMT10x_P_F5 98.353 71.812 116020000 183250000 1181500 211950000 242420000 217390000 134830000 176880000 182880000 141040000 166930000 108030000 171100000 11976000 214280000 229780000 220220000 143880000 180820000 183380000 139220000 161520000 21 21 13 21 21 21 21 21 21 21 21 70042000 107990000 653310 126230000 199110000 179870000 96109000 103530000 107430000 82654000 96934000 65218000 100840000 7964200 128280000 188350000 178220000 103220000 108490000 108420000 81585000 93834000 11 11 8 11 11 11 11 11 11 11 11 45982000 75254000 528160 85725000 43313000 37523000 38724000 73358000 75452000 58384000 69995000 42816000 70259000 4011500 85993000 41431000 42004000 40656000 72329000 74959000 57638000 67691000 10 10 5 10 10 10 10 10 10 10 10 46272000000 27084000000 19189000000 11156 1417;2044 10353 59357;59358;59359;59360;59361;59362;59363;59364;59365;59366;59367;59368;59369;59370;59371 72186;72187;72188;72189;72190;72191;72192;72193;72194;72195;72196;72197;72198;72199;72200;72201;72202;72203;72204;72205;72206 72188 1910 21 LDHKFDLMYAK Unmodified 1379.6908 0.69075746 1417;2044 P68363;P68363-2;P68366;P68366-2;A6NHL2;A6NHL2-2;Q71U36;Q71U36-2;Q9BQE3;P0DPH8;P0DPH7;Q9NY65;Q9NY65-2 TUBA1B;TUBA4A;TUBAL3;TUBA1A;TUBA1C;TUBA8 Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-8 chain no no 0 0 0 1 By MS/MS By MS/MS 5.82 2.98 3 3 5 7 4 56.037 56.245 2;3;4 1.573E-14 16645 20211116_3436_TMUAki_TMT10x_P_F8 169.58 126.07 191440000 314670000 3704600 431120000 335180000 225790000 203020000 107770000 82156000 111530000 225800000 178270000 294050000 20201000 428510000 318210000 240040000 209100000 115640000 93966000 108770000 213370000 15 15 9 15 15 15 15 15 15 15 15 85780000 142020000 850040 192390000 252940000 168680000 134340000 49294000 38429000 50335000 95279000 79867000 132710000 9214500 192350000 239530000 170620000 139500000 56175000 45309000 49117000 90153000 7 7 2 7 7 7 7 7 7 7 7 105660000 172650000 2854600 238730000 82237000 57113000 68676000 58472000 43728000 61190000 130520000 98398000 161350000 10987000 236160000 78678000 69416000 69597000 59463000 48657000 59650000 123220000 8 8 7 8 8 8 8 8 8 8 8 22257000000 14404000000 7852900000 11157 1417;2044 10353 59372;59373;59374;59375;59376;59377;59378;59379;59380;59381;59382 72207;72208;72209;72210;72211;72212;72213;72214;72215;72216;72217;72218;72219;72220;72221;72222;72223 72215 17 LDHKFDLMYAKR Oxidation (M) 1551.7868 0.78678311 1417;2044 P68363;P68363-2;P68366;P68366-2;A6NHL2;A6NHL2-2;Q71U36;Q71U36-2;Q9BQE3;P0DPH8;P0DPH7;Q9NY65;Q9NY65-2 TUBA1B;TUBA4A;TUBAL3;TUBA1A;TUBA1C;TUBA8 Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-8 chain no no 0 0 1 2 By MS/MS By MS/MS 1.57 0.495 3 4 4 3 43.905 43.797 4;5 0.00018813 11476 20211116_3428_TMUAki_TMT10x_P_F1 92.781 82.993 11273000 17169000 7525.2 17866000 31723000 26301000 12903000 29349000 30761000 17026000 18914000 10495000 16023000 1070000 18303000 29934000 26342000 14625000 29318000 30092000 17136000 18612000 8 8 2 8 8 8 8 8 8 8 8 8431200 12683000 0 13218000 25700000 24008000 10764000 22400000 23545000 12701000 13987000 7849200 11836000 805410 13608000 24258000 23756000 12095000 22566000 23054000 12804000 13788000 5 5 0 5 5 5 5 5 5 5 5 2842000 4486300 7525.2 4648000 6022800 2293100 2139100 6949000 7216300 4324900 4926800 2646000 4186800 264640 4695100 5676300 2586000 2530000 6751700 7037900 4332000 4823600 3 3 2 3 3 3 3 3 3 3 3 2209500000 1496700000 712780000 11158 1417;2044 10354 59383;59384;59385;59386;59387;59388;59389 72224;72225;72226;72227;72228;72229;72230;72231 72226 1910 8 LDHKFDLMYAKR Unmodified 1535.7919 0.79186849 1417;2044 P68363;P68363-2;P68366;P68366-2;A6NHL2;A6NHL2-2;Q71U36;Q71U36-2;Q9BQE3;P0DPH8;P0DPH7;Q9NY65;Q9NY65-2 TUBA1B;TUBA4A;TUBAL3;TUBA1A;TUBA1C;TUBA8 Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-8 chain no no 0 0 0 2 By MS/MS By MS/MS 2 0 3 2 1 49.836 49.616 4;5 3.5014E-07 15438 20211116_3429_TMUAki_TMT10x_P_F2 126.5 114.12 7703200 11682000 57197 14573000 19443000 10799000 8148200 7255200 5284600 5737200 10108000 7172800 10911000 856360 14606000 18363000 11155000 8767100 7510000 5672700 5665800 9601700 4 4 3 4 4 4 4 4 4 4 4 4266200 6195900 25626 8186400 12458000 9090600 6125100 4181100 2993100 3099600 5745900 3972400 5788900 492280 8224400 11787000 9094800 6447100 4466500 3279700 3071800 5457600 2 2 1 2 2 2 2 2 2 2 2 3437000 5486000 31571 6386500 6985600 1708500 2023100 3074100 2291500 2637700 4362300 3200400 5122400 364070 6381800 6575300 2059700 2319900 3043500 2393000 2594100 4144100 2 2 2 2 2 2 2 2 2 2 2 935780000 773670000 162110000 11159 1417;2044 10354 59390;59391;59392 72232;72233;72234;72235 72232 4 LDHYAIIKFPLTTESAMK Oxidation (M) 2093.0867 0.086713102 1364 P62750 RPL23A 60S ribosomal protein L23a yes yes 0 0 1 1 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 64.48 64.301 4 9.1982E-06 20187 20211116_3440_TMUAki_TMT10x_S_F2 87.486 70.408 14820000 24759000 211660 22539000 18715000 27442000 17998000 22112000 20900000 20377000 20032000 13800000 23095000 1383700 23223000 17934000 27533000 18384000 22699000 21104000 19973000 19351000 4 4 2 4 4 4 4 4 4 4 4 7866300 12889000 211660 12037000 10252000 19687000 10632000 12178000 11485000 11355000 10646000 7325900 12023000 882840 12455000 9852700 19416000 10791000 12737000 11617000 11124000 10296000 2 2 2 2 2 2 2 2 2 2 2 6954000 11870000 0 10501000 8462900 7754300 7365900 9933300 9414700 9022500 9386100 6474100 11071000 500900 10768000 8080800 8117900 7592400 9962300 9487100 8849300 9055300 2 2 0 2 2 2 2 2 2 2 2 1594900000 1286500000 308340000 11160 1364 10355 59393;59394;59395 72236;72237;72238;72239 72239 1830 4 LDIAAVR Unmodified 756.44939 0.4493882 1027 P43246;P43246-2 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 0 0 By MS/MS 3 0 1 1 37.502 37.245 2 0.095414 11882 20211116_3441_TMUAki_TMT10x_S_F3 55.441 5.4017 1142700 1889800 12341 1872400 1219300 1055400 1213200 1287000 1338600 1189800 1569700 1064100 1763300 107310 1899200 1169700 1130700 1234800 1293900 1364500 1166100 1507100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1142700 1889800 12341 1872400 1219300 1055400 1213200 1287000 1338600 1189800 1569700 1064100 1763300 107310 1899200 1169700 1130700 1234800 1293900 1364500 1166100 1507100 1 1 1 1 1 1 1 1 1 1 1 88672000 0 88672000 11161 1027 10356 59396 72240 72240 1 LDIDPETITWQR Unmodified 1485.7464 0.74635808 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.745 1 2 3 4 2 71.345 71.236 2;3 4.9211E-24 23526 20211116_3442_TMUAki_TMT10x_S_F4 246.86 219.11 15952000 25274000 156470 25575000 18268000 21928000 19760000 10050000 7926900 10562000 17938000 14853000 23585000 1335300 26015000 17552000 22297000 19599000 10833000 8937300 10294000 16994000 4 4 1 4 4 4 4 4 4 4 4 11965000 18529000 156470 18723000 13471000 19026000 15430000 7810300 6151400 7917500 13486000 11140000 17290000 1048800 19091000 12968000 19111000 15262000 8510200 6924300 7728200 12782000 3 3 1 3 3 3 3 3 3 3 3 3987700 6745600 0 6851700 4796400 2902200 4330200 2239400 1775600 2644100 4451700 3712500 6294700 286500 6923300 4583700 3185300 4337600 2322400 2013100 2565700 4211600 1 1 0 1 1 1 1 1 1 1 1 1956700000 1173500000 783160000 11162 629 10357 59397;59398;59399;59400;59401;59402 72241;72242;72243;72244;72245;72246;72247 72247 7 LDIDSPPITAR Unmodified 1196.6401 0.6401021 670;671 P14618;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 By MS/MS By MS/MS 3.13 1.2 2 2 5 4 2 8 7 52.879 52.825 2;3 7.8705E-30 18232 20211116_3441_TMUAki_TMT10x_S_F3 266.99 218.71 110090000 170470000 1044100 216990000 171570000 175520000 118520000 143790000 148330000 130690000 155380000 102500000 159240000 10014000 217460000 163180000 180660000 123910000 147400000 149850000 128170000 149670000 18 18 12 18 18 18 18 18 18 18 18 56118000 87056000 681440 108890000 132980000 138620000 78706000 75603000 79333000 68408000 81748000 52254000 81314000 5963400 109990000 126160000 137970000 82692000 79833000 80766000 67107000 78785000 10 10 7 10 10 10 10 10 10 10 10 53970000 83417000 362690 108100000 38593000 36899000 39811000 68185000 68997000 62278000 73631000 50250000 77930000 4050300 107470000 37022000 42686000 41221000 67570000 69080000 61067000 70886000 8 8 5 8 8 8 8 8 8 8 8 21109000000 11877000000 9232300000 11163 670;671 10358 59403;59404;59405;59406;59407;59408;59409;59410;59411;59412;59413;59414;59415;59416;59417 72248;72249;72250;72251;72252;72253;72254;72255;72256;72257;72258;72259;72260;72261;72262;72263;72264;72265;72266;72267;72268;72269 72265 22 LDIKLDSEDK Unmodified 1174.6081 0.60813326 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 1.12 2 2 2 2 4 4 50.673 50.824 3 0.00056331 15131 20211116_3442_TMUAki_TMT10x_S_F4 95.417 44.325 42702000 56221000 297960 83061000 30362000 30209000 30132000 15867000 18579000 17819000 34698000 39762000 52561000 3637400 82049000 29125000 33713000 30219000 16914000 19979000 17323000 32973000 5 5 3 5 5 5 5 5 5 5 5 22013000 28613000 142630 42756000 19563000 21957000 16161000 9162800 10353000 9772000 18376000 20497000 26751000 1921400 42308000 18681000 23364000 16391000 9980000 11071000 9518700 17478000 3 3 2 3 3 3 3 3 3 3 3 20690000 27609000 155330 40305000 10799000 8252300 13971000 6703800 8226600 8047300 16322000 19265000 25809000 1716000 39742000 10443000 10349000 13828000 6934300 8907800 7804000 15494000 2 2 1 2 2 2 2 2 2 2 2 2206700000 1110800000 1095900000 11164 653 10359 59418;59419;59420;59421;59422;59423;59424;59425 72270;72271;72272;72273;72274;72275;72276;72277 72275 8 LDIKLDSEDKDK Unmodified 1417.73 0.73003931 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 2 By MS/MS 6 0 1 1 46.997 47.157 4 0.0054773 12682 20211116_3445_TMUAki_TMT10x_S_F6 64.136 32.497 3088200 4779100 0 5806800 2354600 2175500 2558700 2505900 2630200 2326500 3258600 2875100 4463300 212500 5797000 2260700 2447600 2586900 2525800 2694900 2279600 3124000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3088200 4779100 0 5806800 2354600 2175500 2558700 2505900 2630200 2326500 3258600 2875100 4463300 212500 5797000 2260700 2447600 2586900 2525800 2694900 2279600 3124000 1 1 0 1 1 1 1 1 1 1 1 351990000 0 351990000 11165 653 10360 59426 72278 72278 1 LDINLLDNVVNCLYHGEGAQQR Unmodified 2540.2442 0.24416981 153 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 By MS/MS By matching 6.5 0.5 1 1 1 1 80.214 80.229 3 1.2305E-07 25794 20211116_3434_TMUAki_TMT10x_P_F6 93.767 79.752 4492600 6769500 0 7301400 4031800 7188100 4541400 3531300 3304300 4290600 4924000 4183100 6318700 363770 7409400 3878600 7247600 4541600 3797700 3473200 4159100 4699800 1 1 0 1 1 1 1 1 1 1 1 4492600 6769500 0 7301400 4031800 7188100 4541400 3531300 3304300 4290600 4924000 4183100 6318700 363770 7409400 3878600 7247600 4541600 3797700 3473200 4159100 4699800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2097000000 661420000 1435600000 11166 153 10361 59427;59428 72279 72279 1 LDKAQIHDLVLVGGSTR Unmodified 1821.0108 0.010846043 596 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 0 1 By MS/MS 1 0 1 1 55.614 55.614 4 0.00026594 16359 20211116_3428_TMUAki_TMT10x_P_F1 76.539 38.173 604340 989140 0 1042200 1029300 1438400 852020 1128700 1014200 1172900 777300 562700 923170 55443 1065400 982400 1434000 878530 1164500 1016200 1143700 757160 1 1 0 1 1 1 1 1 1 1 1 604340 989140 0 1042200 1029300 1438400 852020 1128700 1014200 1172900 777300 562700 923170 55443 1065400 982400 1434000 878530 1164500 1016200 1143700 757160 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 243380000 243380000 0 11167 596 10362 59429 72280 72280 1 LDKSQIHDIVLVGGSTR Unmodified 1837.0058 0.005760665 615 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 1 By MS/MS By MS/MS 5 3.46 3 4 3 4 53.332 53.291 3;4 1.1474E-10 17463 20211116_3439_TMUAki_TMT10x_S_F1 124.45 102.9 32681000 62622000 1033100 59539000 59308000 77755000 41579000 80784000 63593000 63876000 61954000 30437000 58421000 4019300 61230000 56483000 78156000 43783000 81477000 63673000 63081000 59816000 7 7 6 7 7 7 7 7 7 7 7 15396000 30022000 682860 27255000 36145000 59512000 28200000 41598000 32460000 32175000 30306000 14340000 28003000 2177500 28483000 34497000 58234000 29152000 42916000 32759000 31812000 29302000 3 3 2 3 3 3 3 3 3 3 3 17285000 32600000 350210 32284000 23163000 18244000 13378000 39186000 31133000 31700000 31648000 16097000 30418000 1841800 32747000 21985000 19922000 14631000 38561000 30914000 31269000 30514000 4 4 4 4 4 4 4 4 4 4 4 4719600000 2689400000 2030200000 11168 615 10363 59430;59431;59432;59433;59434;59435;59436 72281;72282;72283;72284;72285;72286;72287 72284 7 LDLAGRDLTDYLMK Oxidation (M) 1638.8287 0.8287075 1276;1406;1414;1911 P60709;P63261;P68133;P68032;P62736;P63267;P63267-2;Q562R1 ACTB;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2 no no 0 0 1 1 By MS/MS By MS/MS 6.19 1.49 2 2 4 6 7 6 15 12 67.498 67.534 2;3;4 3.8616E-09 24554 20211116_3435_TMUAki_TMT10x_P_F7 125.61 98.985 294050000 484930000 2945000 445310000 287650000 541670000 327260000 472250000 462500000 429300000 389600000 273800000 452340000 25762000 458530000 276910000 544310000 334070000 482370000 462010000 421050000 378090000 40 40 24 40 40 40 40 40 40 40 40 195570000 316630000 1501300 293630000 191530000 413930000 214640000 314980000 283550000 279420000 250020000 182100000 295360000 16453000 302970000 184240000 412040000 218650000 324180000 284260000 274360000 242230000 24 24 15 24 24 24 24 24 24 24 24 98479000 168300000 1443600 151680000 96127000 127740000 112620000 157270000 178950000 149880000 139580000 91703000 156980000 9309000 155560000 92662000 132270000 115430000 158190000 177750000 146690000 135870000 16 16 9 16 16 16 16 16 16 16 16 118240000000 62677000000 55563000000 11169 1276;1406;1414;1911 10364 59437;59438;59439;59440;59441;59442;59443;59444;59445;59446;59447;59448;59449;59450;59451;59452;59453;59454;59455;59456;59457;59458;59459;59460;59461;59462;59463 72288;72289;72290;72291;72292;72293;72294;72295;72296;72297;72298;72299;72300;72301;72302;72303;72304;72305;72306;72307;72308;72309;72310;72311;72312;72313;72314;72315;72316;72317;72318;72319;72320;72321;72322;72323;72324;72325 72302 1719 38 LDLAGRDLTDYLMK Unmodified 1622.8338 0.83379288 1276;1406;1414;1911 P60709;P63261;P68133;P68032;P62736;P63267;P63267-2;Q562R1 ACTB;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2 no no 0 0 0 1 By MS/MS By MS/MS 7 1.15 1 2 2 7 9 16 5 73.628 73.635 2;3 1.5194E-27 27112 20211116_3446_TMUAki_TMT10x_S_F7 206.74 164.41 460050000 716120000 5044400 813690000 346970000 405660000 532400000 142800000 108130000 194220000 422500000 428380000 668580000 41036000 817100000 337640000 432520000 517200000 160000000 139730000 187570000 397840000 21 21 18 21 21 21 21 21 21 21 21 185590000 280740000 2897200 312270000 146490000 201490000 211980000 60035000 47352000 79419000 162710000 172830000 262080000 17317000 314680000 142270000 208920000 206500000 68759000 59470000 76767000 153390000 14 14 11 14 14 14 14 14 14 14 14 274450000 435380000 2147200 501420000 200480000 204170000 320420000 82769000 60780000 114800000 259790000 255560000 406500000 23719000 502420000 195370000 223600000 310700000 91240000 80256000 110800000 244450000 7 7 7 7 7 7 7 7 7 7 7 41744000000 18763000000 22981000000 11170 1276;1406;1414;1911 10364 59464;59465;59466;59467;59468;59469;59470;59471;59472;59473;59474;59475;59476;59477;59478;59479;59480;59481;59482;59483;59484 72326;72327;72328;72329;72330;72331;72332;72333;72334;72335;72336;72337;72338;72339;72340;72341;72342;72343;72344;72345;72346;72347;72348;72349;72350;72351;72352;72353 72351 28 LDLDLTADSQPPVFK Unmodified 1657.8563 0.85630246 1615 Q13263;Q13263-2 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 0 By MS/MS By MS/MS 4.92 0.954 1 3 4 4 6 6 77.476 77.471 2;3 5.8991E-20 25102 20211116_3445_TMUAki_TMT10x_S_F6 154.24 135.46 65748000 109900000 411020 104570000 73163000 102650000 79881000 67028000 68327000 76639000 82285000 61218000 102530000 5599000 107030000 70324000 103890000 80318000 70235000 70512000 74454000 78945000 11 11 5 11 11 11 11 11 11 11 11 34721000 55732000 248520 54403000 36351000 65393000 41902000 34564000 35819000 39797000 41782000 32329000 51999000 2993700 55758000 35000000 65248000 42024000 36854000 36918000 38652000 40121000 6 6 3 6 6 6 6 6 6 6 6 31027000 54169000 162500 50168000 36812000 37253000 37980000 32464000 32507000 36842000 40503000 28889000 50530000 2605300 51269000 35324000 38640000 38294000 33380000 33594000 35802000 38825000 5 5 2 5 5 5 5 5 5 5 5 14361000000 8817900000 5543300000 11171 1615 10365 59485;59486;59487;59488;59489;59490;59491;59492;59493;59494;59495;59496 72354;72355;72356;72357;72358;72359;72360;72361;72362;72363;72364;72365;72366 72366 13 LDLITVEAFKPILSTR Unmodified 1815.0506 0.050585593 432 O95456;O95456-2 PSMG1 Proteasome assembly chaperone 1 yes no 0 0 0 1 By MS/MS 3 0 1 1 79.375 79.324 3 3.6381E-05 28986 20211116_3441_TMUAki_TMT10x_S_F3 89.344 60.368 1890900 3261500 0 3011200 1830800 1939200 2494000 1436200 1308000 1741100 2171800 1760500 3042400 132640 3073500 1770600 2030300 2458300 1494800 1413200 1687900 2068300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1890900 3261500 0 3011200 1830800 1939200 2494000 1436200 1308000 1741100 2171800 1760500 3042400 132640 3073500 1770600 2030300 2458300 1494800 1413200 1687900 2068300 1 1 0 1 1 1 1 1 1 1 1 543000000 0 543000000 11172 432 10366 59497 72367 72367 1 LDLLEDR Unmodified 872.46035 0.46034682 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 58.311 57.993 2 0.0064965 18852 20211116_3429_TMUAki_TMT10x_P_F2 108.7 34.722 2526800 4018600 3021 4712700 2220900 2385100 2416900 3255200 3336500 3074000 3776400 2352700 3752400 208020 4723900 2134600 2592900 2469800 3260300 3369700 3009700 3629300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2526800 4018600 3021 4712700 2220900 2385100 2416900 3255200 3336500 3074000 3776400 2352700 3752400 208020 4723900 2134600 2592900 2469800 3260300 3369700 3009700 3629300 1 1 1 1 1 1 1 1 1 1 1 344150000 0 344150000 11173 1730 10367 59498;59499;59500;59501 72368;72369;72370 72368 3 LDLLGNLPGSK Unmodified 1125.6394 0.63937381 1039 P46013;P46013-2 MKI67 Antigen KI-67 yes no 0 0 0 0 By MS/MS 8 0 2 2 73.712 73.744 2;3 1.0249E-05 23847 20211116_3436_TMUAki_TMT10x_P_F8 117.25 73.547 9687000 15531000 0 16902000 12175000 17431000 11178000 9232700 9776100 9646400 11521000 9019300 14497000 801170 17154000 11646000 17541000 11347000 9813300 10069000 9404100 11060000 3 3 0 3 3 3 3 3 3 3 3 9687000 15531000 0 16902000 12175000 17431000 11178000 9232700 9776100 9646400 11521000 9019300 14497000 801170 17154000 11646000 17541000 11347000 9813300 10069000 9404100 11060000 3 3 0 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1110300000 1110300000 0 11174 1039 10368 59502;59503 72371;72372;72373 72371 3 LDLMDAGTDAMDVLMGR Unmodified 1822.8263 0.82634102 87 O00429;O00429-2;O00429-4;O00429-3;O00429-5;O00429-9;O00429-8;O00429-6 DNM1L Dynamin-1-like protein yes no 0 0 0 0 By MS/MS 4 0 1 1 82.443 82.45 3 0.00038313 27690 20211116_3431_TMUAki_TMT10x_P_F4 66.068 53.146 577890 787290 34972 887220 481670 843030 544080 383760 461420 501520 585640 538330 735000 79156 897390 465530 851230 546070 416880 477440 484960 561100 1 1 1 1 1 1 1 1 1 1 1 577890 787290 34972 887220 481670 843030 544080 383760 461420 501520 585640 538330 735000 79156 897390 465530 851230 546070 416880 477440 484960 561100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 68746000 68746000 0 11175 87 10369 59504 72374 72374 1 LDNVPHTPSSYIETLPK Unmodified 1909.9785 0.97854286 2602 Q99733;Q99733-2 NAP1L4 Nucleosome assembly protein 1-like 4 yes no 0 0 0 0 By MS/MS By MS/MS 6 0.707 2 4 2 4 4 58.66 58.879 3;4 2.4785E-15 17459 20211116_3445_TMUAki_TMT10x_S_F6 144.97 114.41 41136000 69630000 779920 77837000 51307000 66061000 47571000 46999000 45120000 46220000 52827000 38306000 65003000 4044900 78651000 49134000 67597000 48373000 48724000 46283000 45173000 50722000 10 10 8 10 10 10 10 10 10 10 10 22312000 36879000 520800 39218000 31485000 48953000 30357000 25374000 25069000 23929000 27236000 20778000 34421000 2364300 39989000 30186000 48740000 30687000 26945000 25811000 23430000 26206000 6 6 5 6 6 6 6 6 6 6 6 18824000 32751000 259120 38620000 19822000 17107000 17214000 21626000 20051000 22291000 25591000 17528000 30582000 1680600 38662000 18948000 18856000 17686000 21779000 20471000 21743000 24516000 4 4 3 4 4 4 4 4 4 4 4 5251400000 2831000000 2420500000 11176 2602 10370 59505;59506;59507;59508;59509;59510;59511;59512 72375;72376;72377;72378;72379;72380;72381;72382;72383 72381 9 LDPELHLDIK Unmodified 1191.6499 0.6499385 1575 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 0 0 By MS/MS 4.67 0.471 1 2 3 59.135 59.148 3 4.2811E-05 17252 20211116_3444_TMUAki_TMT10x_S_F5 94.767 48.852 3485600 5418900 19716 5980700 3602400 3102200 3349000 4107000 3667200 3742000 4468400 3245600 5058500 308990 6018600 3449000 3360500 3420200 4114000 3745200 3669700 4285700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3485600 5418900 19716 5980700 3602400 3102200 3349000 4107000 3667200 3742000 4468400 3245600 5058500 308990 6018600 3449000 3360500 3420200 4114000 3745200 3669700 4285700 1 1 1 1 1 1 1 1 1 1 1 771650000 0 771650000 11177 1575 10371 59513;59514;59515 72384;72385 72385 2 LDPETLESLGLIK Unmodified 1426.7919 0.79191129 2258 Q8NI27 THOC2 THO complex subunit 2 yes yes 0 0 0 0 By MS/MS 6 0 1 1 79.908 79.9 3 7.7608E-05 26099 20211116_3445_TMUAki_TMT10x_S_F6 93.623 78.421 716400 1216900 13894 1238700 948000 884750 1074700 763070 740060 779730 946620 667150 1135600 75587 1256900 913010 920420 1073100 782480 774860 760840 906780 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 716400 1216900 13894 1238700 948000 884750 1074700 763070 740060 779730 946620 667150 1135600 75587 1256900 913010 920420 1073100 782480 774860 760840 906780 1 1 1 1 1 1 1 1 1 1 1 277180000 0 277180000 11178 2258 10372 59516 72386 72386 1 LDPFADGGKTPDPK Unmodified 1456.7198 0.71980898 345 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 0 1 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 52.378 52.53 3 0.020674 15656 20211116_3433_TMUAki_TMT10x_P_F5 53.3 33.194 2626900 4669400 86538 5269300 2085200 2470900 2289700 5005300 5424000 4273300 4493900 2446600 4359300 290850 5291400 2009800 2746700 2408900 4939200 5347900 4203700 4363900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2626900 4669400 86538 5269300 2085200 2470900 2289700 5005300 5424000 4273300 4493900 2446600 4359300 290850 5291400 2009800 2746700 2408900 4939200 5347900 4203700 4363900 1 1 1 1 1 1 1 1 1 1 1 431150000 0 431150000 11179 345 10373 59517;59518;59519 72387;72388 72387 2 LDPGSEETQTLVR Unmodified 1443.7205 0.72053726 821 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 By MS/MS By MS/MS 2.57 0.495 3 4 3 4 46.284 46.113 2;3 1.5643E-25 14359 20211116_3430_TMUAki_TMT10x_P_F3 232.56 200.24 5280700 8061400 27435 11418000 10301000 8257800 5685700 7655900 9359200 5610600 8072100 4916400 7534700 452570 11364000 9757100 8593900 6122300 7753100 9314900 5563800 7826700 5 5 2 5 5 5 5 5 5 5 5 2309000 3322600 16032 4996100 8201800 6459200 3493600 3265300 4141900 2248300 3422000 2149600 3106600 239040 5000500 7743600 6418200 3810000 3450700 4159800 2237700 3323400 2 2 1 2 2 2 2 2 2 2 2 2971700 4738800 11403 6422000 2098900 1798500 2192100 4390600 5217300 3362300 4650000 2766800 4428100 213530 6363500 2013500 2175700 2312300 4302500 5155200 3326200 4503300 3 3 1 3 3 3 3 3 3 3 3 1155700000 680820000 474930000 11180 821 10374 59520;59521;59522;59523;59524;59525;59526 72389;72390;72391;72392;72393;72394 72390 6 LDPHLVLDQLR Unmodified 1317.7405 0.74048484 934;935 P35579;P35579-2;P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH9;MYH10 Myosin-9;Myosin-10 no no 0 0 0 0 By MS/MS By MS/MS 6.14 0.639 1 4 2 3 4 65.17 65.373 2;3 1.4315E-11 20151 20211116_3445_TMUAki_TMT10x_S_F6 127.7 91.172 13458000 22949000 171060 21807000 15443000 21077000 15517000 14147000 13517000 15036000 16019000 12531000 21410000 1191500 22317000 14813000 21361000 15674000 14760000 13927000 14649000 15376000 5 5 4 5 5 5 5 5 5 5 5 7419100 12654000 98031 12168000 9093700 15127000 9400200 8044700 7090300 8199100 9032800 6907800 11805000 618480 12492000 8725900 15068000 9447500 8541300 7383200 8001300 8653400 3 3 2 3 3 3 3 3 3 3 3 6038700 10296000 73026 9639200 6349400 5950100 6116800 6102700 6426500 6837300 6986600 5623200 9604600 573060 9824800 6086700 6292600 6226300 6219100 6544200 6647400 6722400 2 2 2 2 2 2 2 2 2 2 2 1890600000 1178200000 712420000 11181 934;935 10375 59527;59528;59529;59530;59531;59532;59533 72395;72396;72397;72398;72399;72400 72399 6 LDPHNHVLYSNR Unmodified 1463.727 0.72696004 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 By MS/MS 4.67 0.471 1 2 3 31.719 31.686 3;4 2.5322E-07 7337 20211116_3433_TMUAki_TMT10x_P_F5 122.97 83.052 778130 1224000 25954 1324900 1903700 1638500 916600 795810 954850 781170 1017200 724710 1142500 104460 1349100 1802100 1630900 982540 851210 971940 763540 979340 2 2 2 2 2 2 2 2 2 2 2 778130 1224000 25954 1324900 1903700 1638500 916600 795810 954850 781170 1017200 724710 1142500 104460 1349100 1802100 1630900 982540 851210 971940 763540 979340 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 144840000 144840000 0 11182 897 10376 59534;59535;59536 72401;72402 72401 2 LDPIQPSDVLSLLDNR Unmodified 1793.9523 0.95232811 2034 Q6ZRP7 QSOX2 Sulfhydryl oxidase 2 yes yes 0 0 0 0 By MS/MS 4 0 1 1 80.609 80.617 3 0.00037851 26961 20211116_3431_TMUAki_TMT10x_P_F4 72.184 50.553 754620 1187000 0 1227400 842580 1322600 876040 721270 669670 801490 956420 702370 1107700 31835 1250700 806670 1328000 880470 766080 700480 779480 913740 1 1 0 1 1 1 1 1 1 1 1 754620 1187000 0 1227400 842580 1322600 876040 721270 669670 801490 956420 702370 1107700 31835 1250700 806670 1328000 880470 766080 700480 779480 913740 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 491880000 491880000 0 11183 2034 10377 59537 72403 72403 1 LDPITGR Unmodified 770.42865 0.42865276 1675 Q14103;Q14103-3;Q14103-4;Q14103-2 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes no 0 0 0 0 By MS/MS By MS/MS 4 1.07 3 2 1 1 2 5 38.82 38.792 2 0.0011897 10075 20211116_3431_TMUAki_TMT10x_P_F4 141.83 59.564 21581000 33663000 2750.9 35378000 22529000 24350000 26097000 21125000 22363000 21522000 27755000 20091000 31417000 1446900 35805000 21669000 25414000 26170000 21653000 23105000 21003000 26608000 7 7 1 7 7 7 7 7 7 7 7 5895800 9293500 0 9535600 8579300 10508000 6866600 5276400 5439500 5835100 7551300 5489100 8672700 467800 9725300 8179400 10527000 7010400 5645400 5671100 5675800 7219100 2 2 0 2 2 2 2 2 2 2 2 15685000 24369000 2750.9 25842000 13950000 13842000 19231000 15849000 16923000 15687000 20204000 14602000 22744000 979120 26080000 13489000 14887000 19159000 16008000 17434000 15327000 19389000 5 5 1 5 5 5 5 5 5 5 5 2113800000 1204700000 909140000 11184 1675 10378 59538;59539;59540;59541;59542;59543;59544 72404;72405;72406;72407;72408;72409;72410;72411 72405 8 LDPQGEYEEHLGILGPVIR Unmodified 2134.1059 0.10586864 51 CON__Q28107 yes yes 0 0 0 0 By MS/MS By matching 3.67 0.471 1 2 2 1 69.343 69.293 3 4.9131E-07 24057 20211116_3430_TMUAki_TMT10x_P_F3 88.176 71.87 + 3038400 5046500 0 5047200 3376900 6388800 4219500 4137100 4142700 4333100 4197700 2828900 4708900 236220 5169000 3257800 6375100 4233600 4325800 4219800 4223900 4047700 1 1 0 1 1 1 1 1 1 1 1 3038400 5046500 0 5047200 3376900 6388800 4219500 4137100 4142700 4333100 4197700 2828900 4708900 236220 5169000 3257800 6375100 4233600 4325800 4219800 4223900 4047700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 939630000 541610000 398020000 11185 51 10379 59545;59546;59547 72412;72413 72412 2 LDPSIFESLQK Unmodified 1275.6711 0.67106787 3225 Q9Y265;Q9Y265-2 RUVBL1 RuvB-like 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 3 3 3 3 77.567 77.572 2;3 1.4534E-11 26831 20211116_3435_TMUAki_TMT10x_P_F7 127.42 107.66 47078000 75437000 34846 72936000 50499000 64458000 54125000 40071000 35766000 39632000 56820000 43834000 70381000 3898200 74456000 48508000 65640000 54144000 41960000 37937000 38725000 54160000 4 4 1 4 4 4 4 4 4 4 4 33626000 50483000 34846 50187000 33225000 50679000 35583000 27889000 24961000 26952000 38986000 31309000 47105000 2748200 51228000 31915000 51086000 35641000 29478000 26356000 26361000 37174000 3 3 1 3 3 3 3 3 3 3 3 13452000 24954000 0 22748000 17274000 13779000 18543000 12182000 10806000 12680000 17834000 12525000 23276000 1150000 23229000 16594000 14554000 18503000 12482000 11581000 12364000 16986000 1 1 0 1 1 1 1 1 1 1 1 2689900000 1811800000 878110000 11186 3225 10380 59548;59549;59550;59551;59552;59553 72414;72415;72416;72417;72418;72419;72420 72417 7 LDQILLNGNNITMLVPGGEGPEV Oxidation (M) 2408.2257 0.22572578 3307 Q9Y4Y9;Q9Y4Y9-2 LSM5 U6 snRNA-associated Sm-like protein LSm5 yes no 0 0 1 0 By MS/MS By MS/MS 4.86 1.46 2 1 1 2 1 2 5 82.463 82.457 3 6.9471E-08 26719 20211116_3434_TMUAki_TMT10x_P_F6 96.848 81.594 8105500 13875000 170040 13530000 9114800 11069000 10445000 7982900 7766000 8893900 11302000 7548000 12945000 706030 13791000 8781400 11358000 10442000 8299500 8143200 8648700 10793000 10 10 4 10 10 10 10 10 10 10 10 2261700 3860300 13184 3513900 1729900 3686300 2518400 2234400 2048100 2025200 2973700 2105900 3600800 133450 3611800 1679300 3712100 2498700 2338800 2137000 1986600 2839900 2 2 1 2 2 2 2 2 2 2 2 5843800 10015000 156860 10016000 7385000 7382300 7926300 5748500 5717900 6868600 8328300 5442100 9344600 572580 10179000 7102100 7646300 7943300 5960700 6006200 6662100 7953200 8 8 3 8 8 8 8 8 8 8 8 1427100000 262210000 1164900000 11187 3307 10381 59554;59555;59556;59557;59558;59559;59560 72421;72422;72423;72424;72425;72426;72427;72428;72429;72430 72422 3270 10 LDQILLNGNNITMLVPGGEGPEV Unmodified 2392.2308 0.23081116 3307 Q9Y4Y9;Q9Y4Y9-2 LSM5 U6 snRNA-associated Sm-like protein LSm5 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 1.5 1 2 1 1 3 83.407 83.41 3 3.5709E-12 27480 20211116_3445_TMUAki_TMT10x_S_F6 120.32 105.23 1256200 2179500 14129 2166500 1467600 1853900 1631700 1413800 1374700 1378800 1705900 1169500 2033700 96002 2206400 1410600 1898100 1638600 1458600 1421600 1348000 1635400 4 4 1 4 4 4 4 4 4 4 4 552080 848410 0 818330 557810 1001500 609350 608090 549500 585740 708130 513980 791540 37809 839690 535630 1000100 613540 637450 567270 572980 678190 1 1 0 1 1 1 1 1 1 1 1 704080 1331100 14129 1348100 909790 852470 1022400 805730 825230 793050 997760 655540 1242200 58192 1366700 874980 897970 1025000 821190 854280 775060 957160 3 3 1 3 3 3 3 3 3 3 3 173940000 41519000 132420000 11188 3307 10381 59561;59562;59563;59564 72431;72432;72433;72434 72433 4 LDQLIYIPLPDEK Unmodified 1555.8498 0.84976052 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 By MS/MS By MS/MS 6.38 1.47 1 2 4 4 6 7 15 9 69.277 69.303 2;3 2.5052E-11 25680 20211116_3434_TMUAki_TMT10x_P_F6 146.5 108.78 180000000 294440000 498880 273980000 177040000 268830000 228230000 156420000 159960000 186710000 216390000 167580000 274660000 12928000 280870000 170920000 271660000 226720000 165620000 167720000 181110000 207000000 26 26 8 26 26 26 26 26 26 26 26 98454000 153750000 389900 143680000 94750000 162310000 111340000 82196000 85367000 97864000 111520000 91664000 143420000 7296300 147570000 91215000 162400000 111260000 88083000 88911000 94934000 106770000 17 17 6 17 17 17 17 17 17 17 17 81544000 140690000 108980 130290000 82294000 106520000 116900000 74225000 74592000 88848000 104870000 75916000 131240000 5631900 133300000 79703000 109260000 115450000 77535000 78810000 86172000 100230000 9 9 2 9 9 9 9 9 9 9 9 32057000000 15223000000 16833000000 11189 1235 10382 59565;59566;59567;59568;59569;59570;59571;59572;59573;59574;59575;59576;59577;59578;59579;59580;59581;59582;59583;59584;59585;59586;59587;59588 72435;72436;72437;72438;72439;72440;72441;72442;72443;72444;72445;72446;72447;72448;72449;72450;72451;72452;72453;72454;72455;72456;72457;72458;72459;72460;72461;72462 72440 28 LDQPMTEIVSR Oxidation (M) 1303.6442 0.6442012 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 1 0 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 39.591 39.5 2 1.1285E-06 11026 20211116_3430_TMUAki_TMT10x_P_F3 136.96 104.54 2277100 3584500 0 3899900 2771100 2160900 2396100 2988200 3213300 2439100 3343400 2119700 3345900 132380 3930200 2643500 2327200 2475400 2980000 3237900 2404700 3221300 5 5 0 5 5 5 5 5 5 5 5 190560 303500 0 296150 571450 565700 276380 334080 380520 263430 318510 177410 283170 18613 306670 540350 554470 298990 349240 380350 260190 309170 2 2 0 2 2 2 2 2 2 2 2 2086500 3281000 0 3603700 2199600 1595200 2119700 2654100 2832800 2175600 3024900 1942300 3062700 113760 3623500 2103100 1772800 2176400 2630800 2857500 2144500 2912100 3 3 0 3 3 3 3 3 3 3 3 190300000 96701000 93595000 11190 769 10383 59589;59590;59591;59592 72463;72464;72465;72466;72467 72464 893 5 LDRETEELHHDRVTLEVGK Unmodified 2275.1557 0.15567238 296 O60869;O60869-2;O60869-3 EDF1 Endothelial differentiation-related factor 1 yes no 0 0 0 2 By MS/MS 4.33 0.471 2 1 3 39.963 40.007 5;6 3.1634E-05 10363 20211116_3431_TMUAki_TMT10x_P_F4 80.975 66.665 2960500 4205100 52582 5373500 6143700 6156800 3576300 3553800 3607400 3147000 4016300 2756900 3928200 336020 5411100 5829300 6165300 3762800 3732500 3683100 3090300 3861700 2 2 1 2 2 2 2 2 2 2 2 2960500 4205100 52582 5373500 6143700 6156800 3576300 3553800 3607400 3147000 4016300 2756900 3928200 336020 5411100 5829300 6165300 3762800 3732500 3683100 3090300 3861700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 514070000 514070000 0 11191 296 10384 59593;59594;59595 72468;72469 72468 2 LDRLVEPLR Unmodified 1109.6557 0.65569258 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 1 By MS/MS 7 0 1 1 50.561 51.049 3 0.0011716 16276 20211116_3446_TMUAki_TMT10x_S_F7 88.134 47.406 2570200 3899400 0 4445600 2210400 2012200 2013500 3480100 2850500 2948200 3556600 2392800 3640600 167960 4460200 2111900 2233000 2078600 3448300 2888300 2901300 3409100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2570200 3899400 0 4445600 2210400 2012200 2013500 3480100 2850500 2948200 3556600 2392800 3640600 167960 4460200 2111900 2233000 2078600 3448300 2888300 2901300 3409100 1 1 0 1 1 1 1 1 1 1 1 138410000 0 138410000 11192 2116 10385 59596 72470 72470 1 LDSSAQFGYYFR Unmodified 1452.6674 0.66737948 1027 P43246;P43246-2 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 67.206 67.403 2 2.2809E-30 20627 20211116_3447_TMUAki_TMT10x_S_F8 263.11 210.43 13257000 22668000 30466 21320000 15274000 22747000 15749000 15545000 14492000 15583000 16425000 12344000 21146000 1087400 21866000 14654000 22923000 15911000 16170000 14866000 15217000 15785000 3 3 2 3 3 3 3 3 3 3 3 9323200 15933000 30466 15104000 10100000 18760000 11495000 11268000 10353000 11260000 11608000 8681100 14864000 812230 15521000 9721000 18718000 11552000 11834000 10627000 10997000 11159000 2 2 2 2 2 2 2 2 2 2 2 3934200 6734700 0 6216200 5174000 3986600 4253700 4277100 4138200 4322700 4817300 3662600 6282300 275180 6344800 4933500 4205400 4359300 4335400 4239100 4219900 4626100 1 1 0 1 1 1 1 1 1 1 1 2431600000 1638500000 793030000 11193 1027 10386 59597;59598;59599 72471;72472;72473 72473 3 LDTHPAMVTVLEMGAAR 2 Oxidation (M) 1842.8968 0.89680384 1578 Q12931;Q12931-2 TRAP1 Heat shock protein 75 kDa, mitochondrial yes no 0 0 2 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 44.217 44.36 3 2.2256E-05 11207 20211116_3444_TMUAki_TMT10x_S_F5 85.576 67.212 2059400 3538700 34741 3986800 1817300 1922200 1608900 4210000 4343700 3407200 3544800 1917700 3303700 197790 4004700 1739200 2136900 1727600 4140900 4271000 3360700 3444300 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2059400 3538700 34741 3986800 1817300 1922200 1608900 4210000 4343700 3407200 3544800 1917700 3303700 197790 4004700 1739200 2136900 1727600 4140900 4271000 3360700 3444300 3 3 2 3 3 3 3 3 3 3 3 256600000 0 256600000 11194 1578 10387 59600;59601;59602 72474;72475;72476;72477;72478 72478 2141;2142 5 LDTHPAMVTVLEMGAAR Oxidation (M) 1826.9019 0.90188922 1578 Q12931;Q12931-2 TRAP1 Heat shock protein 75 kDa, mitochondrial yes no 0 0 1 0 By MS/MS 5 0 2 2 52.367 52.568 3 0.00087054 15714 20211116_3433_TMUAki_TMT10x_P_F5 66.577 54.217 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11195 1578 10387 59603;59604 72479;72480 72480 2141;2142 2 LDTHPAMVTVLEMGAAR Unmodified 1810.907 0.9069746 1578 Q12931;Q12931-2 TRAP1 Heat shock protein 75 kDa, mitochondrial yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 63.461 63.8 3 5.0439E-11 20917 20211116_3435_TMUAki_TMT10x_P_F7 128.64 115.87 5554500 8726200 166260 9607300 8670000 9183700 7656700 4041500 3278000 4040500 6034300 5173000 8145800 659090 9732500 8297800 9266300 7683900 4368600 3624200 3946200 5735800 1 1 1 1 1 1 1 1 1 1 1 5554500 8726200 166260 9607300 8670000 9183700 7656700 4041500 3278000 4040500 6034300 5173000 8145800 659090 9732500 8297800 9266300 7683900 4368600 3624200 3946200 5735800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 708260000 708260000 0 11196 1578 10387 59605;59606 72481 72481 1 LDTSQWPLLLK Unmodified 1312.7391 0.73908786 294 O60832;O60832-2 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 79.188 79.16 2 1.1531E-08 27417 20211116_3429_TMUAki_TMT10x_P_F2 157.38 115.04 9139100 15043000 40742 15799000 10759000 11247000 11463000 5314700 4901900 6937200 10689000 8509300 14039000 767690 15996000 10333000 11605000 11388000 5751600 5479300 6708400 10132000 2 2 1 2 2 2 2 2 2 2 2 4712500 7485100 0 7609500 5381800 7409100 6047500 2604700 2451700 3554700 5357600 4387400 6984800 349400 7751100 5173800 7452300 5988100 2919200 2754700 3432600 5078300 1 1 0 1 1 1 1 1 1 1 1 4426700 7557600 40742 8189100 5377300 3837600 5415800 2710100 2450200 3382500 5331000 4122000 7054400 418280 8244600 5159500 4152600 5399700 2832400 2724600 3275800 5053400 1 1 1 1 1 1 1 1 1 1 1 1443500000 860090000 583360000 11197 294 10388 59607;59608 72482;72483 72482 2 LDVATDNFFQNPELYIR Unmodified 2054.0109 0.010905622 2474 Q96GG9 DCUN1D1 DCN1-like protein 1 yes yes 0 0 0 0 By MS/MS 6 0 1 1 79.468 79.46 3 1.3054E-06 25906 20211116_3445_TMUAki_TMT10x_S_F6 101.15 89.709 2188000 3467800 0 3485800 2596600 2304600 2951700 2041200 1826600 2125000 2643700 2037100 3235900 173220 3537100 2497800 2414700 2940600 2091100 1936500 2071900 2525000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2188000 3467800 0 3485800 2596600 2304600 2951700 2041200 1826600 2125000 2643700 2037100 3235900 173220 3537100 2497800 2414700 2940600 2091100 1936500 2071900 2525000 1 1 0 1 1 1 1 1 1 1 1 725220000 0 725220000 11198 2474 10389 59609 72484 72484 1 LDVGNAEVKLEEENR Unmodified 1713.8533 0.85334235 1157 P51572-2;P51572 BCAP31 B-cell receptor-associated protein 31 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 52.13 52.011 3 5.2442E-30 15628 20211116_3442_TMUAki_TMT10x_S_F4 208.3 180.21 68790000 110800000 211390 124800000 98980000 107710000 74493000 73433000 72672000 69290000 86144000 64044000 103440000 5324400 126080000 94239000 110010000 76785000 76267000 74489000 67843000 82682000 11 11 6 11 11 11 11 11 11 11 11 42590000 65161000 30961 73454000 73501000 82195000 50350000 43552000 41955000 40541000 50481000 39647000 60833000 3012100 74480000 69832000 82327000 52023000 46141000 43352000 39719000 48434000 5 5 1 5 5 5 5 5 5 5 5 26201000 45637000 180430 51351000 25479000 25518000 24143000 29881000 30717000 28748000 35662000 24397000 42605000 2312300 51596000 24406000 27687000 24763000 30127000 31137000 28124000 34249000 6 6 5 6 6 6 6 6 6 6 6 9210300000 5557000000 3653200000 11199 1157 10390 59610;59611;59612;59613;59614;59615;59616;59617 72485;72486;72487;72488;72489;72490;72491;72492;72493;72494;72495 72495 11 LDVGNFSWGSECCTR Unmodified 1786.7403 0.7403032 1338 P62241 RPS8 40S ribosomal protein S8 yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 4 4 4 4 65.888 65.913 2;3 2.5468E-51 19951 20211116_3434_TMUAki_TMT10x_P_F6 286.53 271.66 53787000 88740000 748620 98344000 59321000 55355000 59717000 30845000 23352000 31646000 58064000 50085000 82840000 4973400 99006000 56918000 58493000 59427000 32622000 26580000 30875000 54938000 12 12 5 12 12 12 12 12 12 12 12 21009000 33517000 178990 38204000 25647000 31279000 28621000 11521000 8731900 11958000 21823000 19562000 31292000 1844900 38540000 24669000 31848000 28260000 12724000 10218000 11661000 20646000 5 5 2 5 5 5 5 5 5 5 5 32778000 55223000 569630 60139000 33674000 24076000 31096000 19324000 14620000 19688000 36241000 30523000 51547000 3128500 60466000 32249000 26645000 31167000 19898000 16362000 19213000 34291000 7 7 3 7 7 7 7 7 7 7 7 5988100000 2678800000 3309300000 11200 1338 10391 59618;59619;59620;59621;59622;59623;59624;59625 72496;72497;72498;72499;72500;72501;72502;72503;72504;72505;72506;72507 72500 12 LDVGNFSWGSECCTRK Unmodified 1914.8353 0.83526622 1338 P62241 RPS8 40S ribosomal protein S8 yes yes 0 0 0 1 By MS/MS 8 0 2 2 57.347 57.324 3 6.8936E-07 16586 20211116_3447_TMUAki_TMT10x_S_F8 102.08 89.799 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11201 1338 10392 59626;59627 72508;72509 72509 2 LDVLSALVLAENTLNGPSTK Unmodified 2054.1259 0.12593538 1877 Q2M389;Q2M389-2 KIAA1033 WASH complex subunit 7 yes no 0 0 0 0 By MS/MS By matching 4 2.83 2 1 2 1 83.509 83.508 3 7.6144E-13 27837 20211116_3436_TMUAki_TMT10x_P_F8 125.23 113.06 457270 790030 7896.5 744880 507250 981100 605830 563810 548220 616850 720730 425820 737020 45970 766620 489330 975530 607580 595890 566360 600260 689920 2 2 2 2 2 2 2 2 2 2 2 457270 790030 7896.5 744880 507250 981100 605830 563810 548220 616850 720730 425820 737020 45970 766620 489330 975530 607580 595890 566360 600260 689920 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 101490000 44450000 57040000 11202 1877 10393 59628;59629;59630 72510;72511 72511 2 LDVSLPFVSR Unmodified 1131.6288 0.62880913 1720 Q14676;Q14676-2;Q14676-3;Q14676-4 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 6 2.92 1 1 2 3 1 74.298 74.242 2 5.2429E-07 25395 20211116_3435_TMUAki_TMT10x_P_F7 109.02 61.939 11599000 17580000 24463 14351000 11108000 19956000 12603000 15050000 14981000 15101000 14419000 10799000 16392000 765960 14952000 10677000 19874000 12779000 15551000 15116000 14746000 13926000 2 2 1 2 2 2 2 2 2 2 2 7991200 11336000 0 9132300 7031600 15340000 8477800 10173000 10018000 10225000 9452200 7438900 10570000 437450 9564900 6764800 15128000 8571500 10605000 10104000 9983900 9135700 1 1 0 1 1 1 1 1 1 1 1 3608200 6243900 24463 5218600 4076800 4616300 4125400 4877600 4962500 4876300 4966300 3359800 5822300 328510 5387200 3911800 4745800 4207900 4946000 5012000 4762500 4790700 1 1 1 1 1 1 1 1 1 1 1 1294400000 978200000 316240000 11203 1720 10394 59631;59632;59633;59634 72512;72513;72514;72515 72513 4 LDVTLGPVPEIGGSEAPAPQNK Unmodified 2188.1376 0.1375627 2610 Q99848 EBNA1BP2 Probable rRNA-processing protein EBP2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.57 0.728 4 2 1 4 3 72.684 72.664 3 3.4935E-20 22839 20211116_3444_TMUAki_TMT10x_S_F5 156.73 145.29 16460000 31675000 230790 28471000 19594000 17783000 18701000 18428000 18466000 19249000 22699000 15326000 29545000 1497400 29112000 18771000 18790000 19009000 18728000 18946000 18765000 21766000 7 7 5 7 7 7 7 7 7 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16460000 31675000 230790 28471000 19594000 17783000 18701000 18428000 18466000 19249000 22699000 15326000 29545000 1497400 29112000 18771000 18790000 19009000 18728000 18946000 18765000 21766000 7 7 5 7 7 7 7 7 7 7 7 4290100000 2369800000 1920300000 11204 2610 10395 59635;59636;59637;59638;59639;59640;59641 72516;72517;72518;72519;72520;72521;72522;72523;72524 72520 9 LDYDEDASAMLK Oxidation (M) 1385.6021 0.60206161 1137 P50502;Q8NFI4 ST13;ST13P5 Hsc70-interacting protein;Putative protein FAM10A5 yes no 0 0 1 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 52.806 52.813 3 0.00014056 17186 20211116_3430_TMUAki_TMT10x_P_F3 89.403 72.237 9742700 15436000 20211 16786000 19808000 21292000 12573000 12171000 12118000 11151000 12894000 9071200 14409000 919670 17097000 18809000 21208000 13117000 12805000 12376000 10933000 12415000 3 3 1 3 3 3 3 3 3 3 3 9742700 15436000 20211 16786000 19808000 21292000 12573000 12171000 12118000 11151000 12894000 9071200 14409000 919670 17097000 18809000 21208000 13117000 12805000 12376000 10933000 12415000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 539070000 539070000 0 11205 1137 10396 59642;59643;59644;59645 72525;72526;72527;72528;72529 72527 1501 5 LDYDEDASAMLK Unmodified 1369.6071 0.60714699 1137 P50502;Q8NFI4 ST13;ST13P5 Hsc70-interacting protein;Putative protein FAM10A5 yes no 0 0 0 0 By MS/MS 3 0 1 1 63.621 63.335 2 6.2722E-18 21530 20211116_3430_TMUAki_TMT10x_P_F3 189.58 166.84 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11206 1137 10396 59646 72530 72530 1 LDYFLLSHSLLPALCDSK Unmodified 2091.0711 0.071063038 829 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3.38 2.24 6 10 14 1 1 2 5 14 25 71.648 71.613 2;3;4 5.0899E-41 26527 20211116_3440_TMUAki_TMT10x_S_F2 213.34 198.72 304620000 491800000 1614800 479060000 341920000 460700000 379610000 290870000 239580000 312180000 357710000 283620000 458850000 23616000 489340000 328660000 466650000 378740000 304940000 254050000 304010000 341410000 48 48 29 48 48 48 48 48 48 48 48 162160000 253760000 294920 246280000 165870000 296620000 184270000 151840000 119020000 172030000 178230000 150980000 236760000 12307000 252520000 159430000 295820000 183930000 162290000 126030000 167180000 170090000 14 14 6 14 14 14 14 14 14 14 14 142460000 238040000 1319900 232780000 176050000 164080000 195330000 139030000 120570000 140150000 179480000 132640000 222100000 11309000 236820000 169230000 170830000 194810000 142650000 128020000 136830000 171310000 34 34 23 34 34 34 34 34 34 34 34 73672000000 40322000000 33349000000 11207 829 10397 59647;59648;59649;59650;59651;59652;59653;59654;59655;59656;59657;59658;59659;59660;59661;59662;59663;59664;59665;59666;59667;59668;59669;59670;59671;59672;59673;59674;59675;59676;59677;59678;59679;59680;59681;59682;59683;59684;59685 72531;72532;72533;72534;72535;72536;72537;72538;72539;72540;72541;72542;72543;72544;72545;72546;72547;72548;72549;72550;72551;72552;72553;72554;72555;72556;72557;72558;72559;72560;72561;72562;72563;72564;72565;72566;72567;72568;72569;72570;72571;72572;72573;72574;72575;72576;72577;72578;72579;72580;72581;72582;72583;72584 72554 54 LDYGQHVVAGTPGR Unmodified 1468.7423 0.74227576 973 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 36.905 36.972 3 2.252E-06 8271 20211116_3444_TMUAki_TMT10x_S_F5 108.06 92.477 1255100 1948800 45310 2254700 2430200 2150600 1450500 1801100 1851900 1376900 1883800 1169000 1819500 162740 2277000 2308300 2189500 1534900 1836200 1867600 1362300 1816300 2 2 2 2 2 2 2 2 2 2 2 825470 1268200 35291 1484100 2023000 1745000 1037400 1061000 1143800 832110 1183300 768860 1184100 118100 1502600 1917100 1746200 1107100 1106400 1160300 822120 1140300 1 1 1 1 1 1 1 1 1 1 1 429630 680580 10019 770640 407190 405600 413090 740150 708180 544830 700480 400100 635390 44642 774360 391190 443230 427840 729810 707270 540160 675970 1 1 1 1 1 1 1 1 1 1 1 210130000 126740000 83396000 11208 973 10398 59686;59687;59688 72585;72586;72587 72587 3 LDYILGLK Unmodified 933.55352 0.55351892 1054 P46781 RPS9 40S ribosomal protein S9 yes yes 0 0 0 0 By MS/MS By MS/MS 4 3.29 2 1 2 3 2 78.488 78.47 2 0.00042803 25671 20211116_3428_TMUAki_TMT10x_P_F1 146.35 64.395 30674000 53112000 427180 45081000 43970000 68503000 38000000 42049000 42093000 43253000 43585000 28564000 49529000 3080600 46907000 42033000 67747000 38984000 44124000 42696000 42194000 41999000 4 4 1 4 4 4 4 4 4 4 4 23686000 40124000 427180 34298000 36744000 60100000 30473000 32403000 32433000 33500000 33379000 22057000 37418000 2513700 35787000 35098000 59012000 31299000 34376000 32943000 32673000 32170000 3 3 1 3 3 3 3 3 3 3 3 6988200 12988000 0 10782000 7226100 8402300 7526700 9646100 9659700 9753000 10207000 6506600 12111000 566960 11120000 6935200 8734500 7685000 9747900 9753200 9520900 9829000 1 1 0 1 1 1 1 1 1 1 1 2810700000 2407800000 402970000 11209 1054 10399 59689;59690;59691;59692;59693 72588;72589;72590;72591;72592 72588 5 LDYLGVSYGLTPR Unmodified 1452.7613 0.76127986 2769 Q9H0A0;Q9H0A0-2 NAT10 N-acetyltransferase 10 yes no 0 0 0 0 By MS/MS 4.5 3.5 1 1 2 72.757 72.78 2 1.3457E-09 23286 20211116_3428_TMUAki_TMT10x_P_F1 138.63 108.37 15494000 27190000 165610 23284000 15874000 35335000 18707000 21257000 26285000 24413000 23570000 14426000 25356000 1155900 24210000 15284000 34937000 19062000 22418000 26312000 23713000 22821000 4 4 2 4 4 4 4 4 4 4 4 15494000 27190000 165610 23284000 15874000 35335000 18707000 21257000 26285000 24413000 23570000 14426000 25356000 1155900 24210000 15284000 34937000 19062000 22418000 26312000 23713000 22821000 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 852890000 852890000 0 11210 2769 10400 59694;59695 72593;72594;72595;72596 72594 4 LDYLSSLK Unmodified 937.51205 0.51204804 551 P08195;P08195-3;P08195-2;P08195-4 SLC3A2 4F2 cell-surface antigen heavy chain yes no 0 0 0 0 By MS/MS 8 0 1 1 67.791 67.912 2 0.0023748 21416 20211116_3436_TMUAki_TMT10x_P_F8 103.56 9.2609 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11211 551 10401 59696 72597 72597 1 LDYSDFQIVK Unmodified 1226.6183 0.61830402 535 P07311 ACYP1 Acylphosphatase-1 yes yes 0 0 0 0 By MS/MS 6 0 1 1 71.553 71.497 2 0.000124 22281 20211116_3434_TMUAki_TMT10x_P_F6 94.692 64.08 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11212 535 10402 59697 72598 72598 1 LEAASSALGGPTLTHAVTR Unmodified 1850.985 0.98502522 3213 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 yes yes 0 0 0 0 By MS/MS 8 0 1 1 50.123 50.024 3 1.8777E-12 13609 20211116_3447_TMUAki_TMT10x_S_F8 130.56 106.37 1324900 2354800 9610.1 1966000 1348600 1307800 1264100 2301300 2159700 2037400 2038200 1233700 2195800 119140 2023300 1291600 1395200 1314400 2281800 2153600 2000700 1970000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1324900 2354800 9610.1 1966000 1348600 1307800 1264100 2301300 2159700 2037400 2038200 1233700 2195800 119140 2023300 1291600 1395200 1314400 2281800 2153600 2000700 1970000 1 1 1 1 1 1 1 1 1 1 1 178710000 0 178710000 11213 3213 10403 59698 72599 72599 1 LEAAYLDLQR Unmodified 1190.6295 0.62953741 323 O75347;O75347-2 TBCA Tubulin-specific chaperone A yes no 0 0 0 0 By MS/MS By MS/MS 4.17 0.687 1 3 2 3 3 60.095 60.043 2 1.1847E-09 17670 20211116_3444_TMUAki_TMT10x_S_F5 189.38 137.64 34010000 56818000 100630 60204000 44385000 50341000 35847000 43950000 42857000 39809000 44316000 31666000 53030000 2845300 61031000 42336000 51749000 37024000 44884000 43345000 39051000 42704000 5 5 3 5 5 5 5 5 5 5 5 15687000 24530000 65217 26650000 24848000 33444000 19763000 18070000 18322000 16602000 17192000 14606000 22897000 1450100 27139000 23699000 33306000 20268000 19104000 18662000 16275000 16620000 2 2 1 2 2 2 2 2 2 2 2 18324000 32288000 35415 33554000 19537000 16898000 16083000 25880000 24536000 23207000 27123000 17060000 30133000 1395200 33892000 18637000 18444000 16756000 25780000 24683000 22775000 26085000 3 3 2 3 3 3 3 3 3 3 3 2563800000 1262600000 1301200000 11214 323 10404 59699;59700;59701;59702;59703;59704 72600;72601;72602;72603;72604;72605 72605 6 LEAEGVPEVSEKYEISSVPTFLFFK Unmodified 2844.4473 0.4473291 376 O76003 GLRX3 Glutaredoxin-3 yes yes 0 0 0 1 By MS/MS By MS/MS 6.88 0.781 3 3 2 4 4 79.948 79.955 3;4 7.9388E-31 28243 20211116_3446_TMUAki_TMT10x_S_F7 179.33 161.42 21021000 35302000 42125 29342000 23607000 31391000 27782000 16996000 18055000 20703000 25231000 19572000 32919000 1713400 30386000 22736000 31529000 27661000 18117000 19048000 20067000 24118000 7 7 2 7 7 7 7 7 7 7 7 10849000 18333000 40859 16136000 10103000 18158000 12779000 9091600 9522900 11294000 12930000 10102000 17098000 850590 16647000 9752000 18170000 12721000 9767300 9951300 10940000 12367000 4 4 1 4 4 4 4 4 4 4 4 10171000 16970000 1266.3 13206000 13503000 13233000 15004000 7903900 8531800 9408600 12302000 9470400 15821000 862770 13739000 12984000 13359000 14940000 8350100 9096600 9126900 11750000 3 3 1 3 3 3 3 3 3 3 3 10397000000 5644800000 4752100000 11215 376 10405 59705;59706;59707;59708;59709;59710;59711;59712 72606;72607;72608;72609;72610;72611;72612 72611 7 LEAERFENLR Unmodified 1275.6571 0.65714914 1107 P49591 SARS Serine--tRNA ligase, cytoplasmic yes yes 0 0 0 1 By MS/MS 3 0 1 1 40.686 40.741 3 0.00014526 12141 20211116_3430_TMUAki_TMT10x_P_F3 115.29 93.655 247590 400820 6436.9 466140 558150 546970 360060 334790 292740 272330 325520 230580 374250 30875 472130 530590 547460 373500 349230 301930 268540 313000 1 1 1 1 1 1 1 1 1 1 1 247590 400820 6436.9 466140 558150 546970 360060 334790 292740 272330 325520 230580 374250 30875 472130 530590 547460 373500 349230 301930 268540 313000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22185000 22185000 0 11216 1107 10406 59713 72613 72613 1 LEAIEDDSVKETDSSSASAATPSK Unmodified 2437.1344 0.13438739 1220 P54578;P54578-2;P54578-3 USP14 Ubiquitin carboxyl-terminal hydrolase 14 yes no 0 0 0 1 By MS/MS 3.5 0.5 1 1 2 51.837 51.697 4 9.9349E-30 17845 20211116_3441_TMUAki_TMT10x_S_F3 176.84 164.9 3467200 6410200 99515 7631100 4029900 3589900 3356800 6607600 7327000 4988800 6358200 3229000 5985900 385720 7638400 3853000 3974200 3563000 6517400 7245800 4939000 6163500 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3467200 6410200 99515 7631100 4029900 3589900 3356800 6607600 7327000 4988800 6358200 3229000 5985900 385720 7638400 3853000 3974200 3563000 6517400 7245800 4939000 6163500 3 3 2 3 3 3 3 3 3 3 3 483470000 0 483470000 11217 1220 10407 59714;59715 72614;72615;72616 72614 3 LEALDANSR Unmodified 987.49852 0.49852324 580 P09496-2;P09496;P09496-4;P09496-3 CLTA Clathrin light chain A yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 38.933 39.044 2 0.0037649 11388 20211116_3430_TMUAki_TMT10x_P_F3 80.755 40.253 1396000 2210400 7108.3 2143200 1714000 1522200 1584700 893330 1126300 994170 1628500 1299700 2062300 107210 2181900 1639300 1574900 1600000 943030 1183700 966800 1555400 2 2 1 2 2 2 2 2 2 2 2 526350 849400 7108.3 798760 794690 848870 572300 343890 446760 396730 631890 490140 792390 54021 819200 756830 850330 588250 376710 466560 385290 603830 1 1 1 1 1 1 1 1 1 1 1 869660 1361000 0 1344400 919260 673320 1012400 549430 679530 597440 996570 809580 1269900 53189 1362700 882500 724550 1011700 566320 717120 581510 951540 1 1 0 1 1 1 1 1 1 1 1 36605000 18538000 18067000 11218 580 10408 59716;59717 72617;72618 72617 2 LEAMCFDGVKR Unmodified 1324.6268 0.62677699 1064 P47813 EIF1AX Eukaryotic translation initiation factor 1A, X-chromosomal yes yes 0 0 0 1 By matching By MS/MS 7 0 2 1 1 50.116 50.683 3 0.0020506 16129 20211116_3446_TMUAki_TMT10x_S_F7 76.326 45.995 4408300 6866800 66672 8077800 4181800 3147400 3302100 4155900 3582800 3903500 5704000 4105100 6412000 424440 8081400 3991600 3533100 3404100 4167000 3707900 3822800 5436700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4408300 6866800 66672 8077800 4181800 3147400 3302100 4155900 3582800 3903500 5704000 4105100 6412000 424440 8081400 3991600 3533100 3404100 4167000 3707900 3822800 5436700 1 1 1 1 1 1 1 1 1 1 1 453330000 313140000 140190000 11219 1064 10409 59718;59719 72619 72619 1 LEAQEQAFLAR Unmodified 1274.6619 0.66190017 1938 Q5T3I0;Q5T3I0-3 GPATCH4 G patch domain-containing protein 4 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 53.613 53.349 2 0.00043371 17427 20211116_3430_TMUAki_TMT10x_P_F3 91.215 64.117 5308000 8790300 105070 8673000 6852400 10287000 5942300 8899900 8489900 7573400 7438500 4943100 8201800 559620 8880300 6553900 10349000 6154000 9079100 8488300 7451300 7208200 2 2 2 2 2 2 2 2 2 2 2 2875600 4557600 39050 4462700 4302600 7827800 3641600 5384200 4856900 4226900 3985200 2677800 4252400 294790 4609700 4111200 7711900 3766000 5563000 4856900 4175900 3871300 1 1 1 1 1 1 1 1 1 1 1 2432400 4232700 66015 4210300 2549800 2459700 2300700 3515700 3633100 3346600 3453400 2265300 3949500 264830 4270600 2442600 2637500 2388000 3516100 3631400 3275400 3336900 1 1 1 1 1 1 1 1 1 1 1 288560000 161600000 126950000 11220 1938 10410 59720;59721 72620;72621 72620 2 LEASIER Unmodified 816.43413 0.43413207 3078 Q9UBI6 GNG12 Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12 yes yes 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 35.07 34.943 2 0.011512 9732 20211116_3429_TMUAki_TMT10x_P_F2 97.033 30.946 1966100 3079700 4726.8 3223100 2934700 2833700 2301800 1835100 2022500 1789100 2528900 1830600 2874200 170320 3272200 2797600 2888300 2359300 1914900 2087700 1749300 2423800 4 4 2 4 4 4 4 4 4 4 4 1028700 1585200 0 1686700 1949500 1938200 1269100 938910 1044900 898920 1336700 957760 1479600 91257 1717300 1851700 1936600 1315900 1003900 1083200 879580 1280400 1 1 0 1 1 1 1 1 1 1 1 937420 1494400 4726.8 1536500 985140 895430 1032700 896220 977540 890210 1192200 872840 1394600 79059 1554900 945840 951770 1043300 911000 1004500 869670 1143400 3 3 2 3 3 3 3 3 3 3 3 73877000 32724000 41153000 11221 3078 10411 59722;59723;59724 72622;72623;72624;72625 72622 4 LEATINELV Unmodified 1000.5441 0.54407645 607 P10599;P10599-2 TXN Thioredoxin yes no 0 0 0 0 By MS/MS By MS/MS 2.22 0.916 2 4 2 1 4 5 65.006 64.953 2 0.00072801 27943 20211116_3439_TMUAki_TMT10x_S_F1 113.7 90.139 28189000 44985000 487840 45294000 29061000 45534000 35845000 38927000 27689000 47945000 36795000 26250000 41977000 2743000 46189000 28061000 46224000 35752000 40182000 28849000 46454000 35212000 7 7 5 7 7 7 7 7 7 7 7 16571000 25758000 212550 25570000 16215000 29984000 19124000 18035000 15940000 20734000 20836000 15431000 24034000 1506100 26165000 15630000 30005000 19148000 19020000 16530000 20139000 19948000 3 3 1 3 3 3 3 3 3 3 3 11618000 19228000 275290 19724000 12845000 15550000 16721000 20892000 11748000 27210000 15959000 10819000 17943000 1236900 20024000 12431000 16219000 16604000 21161000 12319000 26315000 15264000 4 4 4 4 4 4 4 4 4 4 4 4937900000 2332300000 2605600000 11222 607 10412 59725;59726;59727;59728;59729;59730;59731;59732;59733 72626;72627;72628;72629;72630;72631 72629 6 LECVEPNCR Unmodified 1175.5063 0.50632751 1450 Q969Q0;P83881 RPL36AL;RPL36A 60S ribosomal protein L36a-like;60S ribosomal protein L36a yes no 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 35.312 35.182 2 6.4758E-06 11309 20211116_3441_TMUAki_TMT10x_S_F3 179.17 160.11 1543700 2630600 22164 2711000 3032200 2262000 1937100 1690700 1878500 1441400 2201100 1437500 2454900 163230 2753200 2880800 2319300 2020300 1740400 1925100 1418000 2113300 3 3 2 3 3 3 3 3 3 3 3 669560 1120300 21976 1230100 2171100 1586200 1060300 963280 1144300 726740 1112300 623590 1045800 97022 1252500 2055100 1580000 1136200 1003800 1159300 719520 1074000 1 1 1 1 1 1 1 1 1 1 1 874160 1510300 187.85 1480900 861140 675800 876720 727420 734270 714620 1088800 813880 1409100 66208 1500800 825700 739280 884070 736610 765810 698460 1039300 2 2 1 2 2 2 2 2 2 2 2 118650000 56547000 62104000 11223 1450 10413 59734;59735;59736 72632;72633;72634 72634 3 LEDGTEFDSSLPQNQPFVFSLGTGQVIK Unmodified 3052.5029 0.5029465 822 P26885 FKBP2 Peptidyl-prolyl cis-trans isomerase FKBP2 yes yes 0 0 0 0 By MS/MS By matching 6.5 0.5 1 1 1 1 79.967 79.979 4 0.088294 25736 20211116_3434_TMUAki_TMT10x_P_F6 29.54 17.687 1362900 1988600 44032 2558000 1300800 2089000 1390400 1169200 1024600 1159500 1303000 1269400 1857700 153160 2562300 1252200 2136400 1394300 1234900 1068200 1132800 1248300 1 1 1 1 1 1 1 1 1 1 1 1362900 1988600 44032 2558000 1300800 2089000 1390400 1169200 1024600 1159500 1303000 1269400 1857700 153160 2562300 1252200 2136400 1394300 1234900 1068200 1132800 1248300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1231300000 506830000 724420000 11224 822 10414 59737;59738 72635 72635 1 LEDTENWLYEDGEDQPK Unmodified 2079.8909 0.89090965 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 3 1 2 69.52 69.52 3 1.9347E-05 21972 20211116_3428_TMUAki_TMT10x_P_F1 85.513 74.243 6472300 11423000 7173.7 12998000 9571400 13331000 10271000 5099100 5223400 6001700 8138700 6026400 10665000 586470 13154000 9195500 13375000 10226000 5626800 5638300 5824400 7760900 2 2 1 2 2 2 2 2 2 2 2 6472300 11423000 7173.7 12998000 9571400 13331000 10271000 5099100 5223400 6001700 8138700 6026400 10665000 586470 13154000 9195500 13375000 10226000 5626800 5638300 5824400 7760900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1488300000 1488300000 0 11225 916 10415 59739;59740;59741 72636;72637;72638;72639 72637 4 LEDVLPLAFTR Unmodified 1272.7078 0.70778773 1930 Q5SSJ5;Q5SSJ5-2;Q5SSJ5-3 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 78.895 78.912 2 1.9171E-11 27386 20211116_3435_TMUAki_TMT10x_P_F7 175.65 121.68 25587000 41220000 260010 40554000 29079000 38605000 33516000 25410000 23965000 28829000 32322000 23826000 38460000 2375600 41390000 28008000 39152000 33469000 26604000 25095000 28015000 30921000 4 4 3 4 4 4 4 4 4 4 4 11877000 18980000 87270 18831000 12274000 22535000 15418000 12227000 11984000 13679000 15106000 11059000 17710000 1071600 19277000 11854000 22498000 15368000 12996000 12453000 13300000 14476000 2 2 2 2 2 2 2 2 2 2 2 13711000 22240000 172740 21723000 16805000 16069000 18099000 13183000 11981000 15150000 17216000 12767000 20751000 1304000 22113000 16154000 16654000 18101000 13608000 12642000 14715000 16446000 2 2 1 2 2 2 2 2 2 2 2 4077600000 1793500000 2284100000 11226 1930 10416 59742;59743;59744;59745;59746 72640;72641;72642;72643;72644 72642 5 LEEAEKAADESER Unmodified 1475.674 0.673981 526;527;525;1413;578;579 P06753-2;P06753-3;P06753-5;P06753-4;P06753-6;P09493-4;P09493;P09493-6;P06753;P09493-5;P67936;P67936-2;P07951;P07951-2;CON__Q3SX28;P07951-3 TPM3;TPM1;TPM4;TPM2 Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain;Tropomyosin beta chain no no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 37.524 37.528 3 0.00016164 9196 20211116_3428_TMUAki_TMT10x_P_F1 89.466 65.532 + 1950500 3721600 19339 2660400 4714000 5292400 3441000 3250800 3707500 3168400 3670600 1816000 3468700 189230 2828400 4487200 5183300 3565100 3405700 3758800 3097800 3542100 4 4 2 4 4 4 4 4 4 4 4 1280700 2352900 17780 1849400 3509200 4153200 2492100 2011300 2369800 2018300 2367400 1192400 2193600 128470 1956700 3338600 4040700 2577300 2153200 2416100 1970900 2283800 2 2 1 2 2 2 2 2 2 2 2 669770 1368700 1559.4 811030 1204800 1139200 948820 1239500 1337700 1150000 1303200 623610 1275100 60764 871680 1148600 1142600 987850 1252500 1342600 1126900 1258200 2 2 1 2 2 2 2 2 2 2 2 142940000 83937000 59006000 11227 526;527;578;525;579;1413 10417 59747;59748;59749 72645;72646;72647;72648 72645 4 LEEGLVNNKYDTALNLLK Unmodified 2046.0997 0.09972063 2259 Q8NI36 WDR36 WD repeat-containing protein 36 yes yes 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 76.677 76.758 3 4.3329E-12 26929 20211116_3446_TMUAki_TMT10x_S_F7 131.45 118.22 4349400 7613100 6555.2 6782900 5528200 5152800 4659200 4727200 4542400 5156200 6011200 4049700 7100700 383210 6953900 5279200 5340300 4767900 4840600 4678400 5018200 5753300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4349400 7613100 6555.2 6782900 5528200 5152800 4659200 4727200 4542400 5156200 6011200 4049700 7100700 383210 6953900 5279200 5340300 4767900 4840600 4678400 5018200 5753300 1 1 1 1 1 1 1 1 1 1 1 594700000 0 594700000 11228 2259 10418 59750;59751 72649;72650 72650 2 LEEGPPVTTVLTR Unmodified 1410.7718 0.77184455 557 P08559;P08559-3;P08559-4;P08559-2 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial yes no 0 0 0 0 By MS/MS 4 0 1 1 56.356 56.507 2 5.8687E-07 17057 20211116_3431_TMUAki_TMT10x_P_F4 120.54 90.289 7475600 12314000 0 14144000 14456000 15917000 12531000 6242100 6289400 6194600 9578200 6960200 11497000 673390 14327000 13810000 15888000 12618000 6833400 6788200 6051900 9137900 2 2 0 2 2 2 2 2 2 2 2 7475600 12314000 0 14144000 14456000 15917000 12531000 6242100 6289400 6194600 9578200 6960200 11497000 673390 14327000 13810000 15888000 12618000 6833400 6788200 6051900 9137900 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 319670000 319670000 0 11229 557 10419 59752 72651;72652 72651 2 LEEGPPVTTVLTREDGLK Unmodified 1953.0419 0.0418714 557 P08559;P08559-3;P08559-4;P08559-2 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 60.488 60.602 3 0.0052221 17838 20211116_3444_TMUAki_TMT10x_S_F5 59.512 33.646 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11230 557 10420 59753;59754 72653;72654 72654 2 LEELHVIDVK Unmodified 1193.6656 0.66558856 1847 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 57.208 57.355 3 2.6562E-05 16526 20211116_3444_TMUAki_TMT10x_S_F5 99.283 70.539 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11231 1847 10421 59755;59756 72655;72656 72656 2 LEELPMVLIGGK Oxidation (M) 1313.7265 0.72647426 3407 yes yes 0 0 1 0 By MS/MS 5 0 1 1 76.654 76.678 2 0.093105 25578 20211116_3433_TMUAki_TMT10x_P_F5 56.729 28.002 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11232 3407 10422 59757 72657 72657 3326 1 LEEMFPDEVDTPRDVAAR Oxidation (M) 2104.9735 0.97353384 1878 Q2NL82 TSR1 Pre-rRNA-processing protein TSR1 homolog yes yes 0 0 1 1 By MS/MS 2 0 1 1 51.051 50.792 3 0.025647 15962 20211116_3429_TMUAki_TMT10x_P_F2 42.981 33.232 1729400 2511900 0 2871200 2499900 3282300 2087300 1890400 1652700 1663700 2101800 1610100 2345200 140500 2909900 2385800 3287200 2125300 1985500 1716300 1634200 2013700 1 1 0 1 1 1 1 1 1 1 1 1729400 2511900 0 2871200 2499900 3282300 2087300 1890400 1652700 1663700 2101800 1610100 2345200 140500 2909900 2385800 3287200 2125300 1985500 1716300 1634200 2013700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 296940000 296940000 0 11233 1878 10423 59758 72658 72658 2496 1 LEFEETEEPDFTALCQK Unmodified 2084.9249 0.92485231 515 P06400 RB1 Retinoblastoma-associated protein yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 76.181 76.074 3 2.139E-06 26144 20211116_3429_TMUAki_TMT10x_P_F2 100.43 81.642 4464400 7446600 104620 5914400 4104600 7511900 4717700 3318800 2806700 4003600 4837000 4157600 6942700 462590 6165800 3957500 7459800 4694200 3606500 3011000 3881900 4603200 1 1 1 1 1 1 1 1 1 1 1 4464400 7446600 104620 5914400 4104600 7511900 4717700 3318800 2806700 4003600 4837000 4157600 6942700 462590 6165800 3957500 7459800 4694200 3606500 3011000 3881900 4603200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 934360000 934360000 0 11234 515 10424 59759;59760;59761 72659;72660;72661 72660 3 LEGDAALNR Unmodified 957.48796 0.48795855 3256 Q9Y2Z0;Q9Y2Z0-2 SUGT1 Suppressor of G2 allele of SKP1 homolog yes no 0 0 0 0 By MS/MS 2 0 1 1 32.793 32.859 2 0.010312 7282 20211116_3440_TMUAki_TMT10x_S_F2 69.423 29.422 43125 71654 0 88035 42741 47171 64391 34145 35784 33896 54007 40148 66922 2868.9 88042 41480 50282 63297 35367 38302 33115 51535 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 43125 71654 0 88035 42741 47171 64391 34145 35784 33896 54007 40148 66922 2868.9 88042 41480 50282 63297 35367 38302 33115 51535 1 1 0 1 1 1 1 1 1 1 1 3129800 0 3129800 11235 3256 10425 59762 72662 72662 1 LEGLGSSEADQDGLASTVR Unmodified 1903.9123 0.91231379 1536 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 0 By MS/MS By MS/MS 2.62 0.857 1 2 4 1 5 3 56.056 55.837 2;3 2.5464E-210 18462 20211116_3430_TMUAki_TMT10x_P_F3 431.85 386.77 14329000 24734000 98910 25671000 18923000 25306000 16498000 20823000 19707000 18278000 20913000 13342000 23083000 1275500 26117000 18085000 25701000 16961000 21322000 19951000 17956000 20137000 8 8 3 8 8 8 8 8 8 8 8 8148700 13351000 98910 14345000 12889000 19455000 11238000 11833000 11026000 9817100 11776000 7587900 12461000 824650 14640000 12322000 19333000 11479000 12356000 11253000 9671000 11337000 4 4 3 4 4 4 4 4 4 4 4 6180600 11384000 0 11326000 6034400 5850400 5259700 8989700 8681300 8460700 9136800 5754200 10622000 450810 11477000 5762700 6368300 5481500 8965900 8698200 8285000 8799800 4 4 0 4 4 4 4 4 4 4 4 2389600000 1585400000 804270000 11236 1536 10426 59763;59764;59765;59766;59767;59768;59769;59770 72663;72664;72665;72666;72667;72668;72669;72670;72671;72672 72667 10 LEGMLSQSVSSQYNMAGVR Unmodified 2055.9718 0.9717597 1216 P54105 CLNS1A Methylosome subunit pICln yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 2 1 68.542 68.519 3 2.12E-41 21136 20211116_3447_TMUAki_TMT10x_S_F8 213.71 200.87 4504100 7759000 90370 7370400 5055300 6825900 5266500 5697800 5421900 5393600 6189900 4194500 7238500 465360 7538300 4858000 6962000 5335800 5841000 5536300 5280200 5947400 2 2 2 2 2 2 2 2 2 2 2 2284600 3533000 32194 3566600 2177700 4183800 2458200 2535800 2280000 2351500 2706500 2127500 3296800 217920 3645300 2097000 4187000 2473300 2655900 2342400 2304200 2597700 1 1 1 1 1 1 1 1 1 1 1 2219500 4226000 58176 3803800 2877600 2642100 2808300 3162100 3141900 3042100 3483400 2067000 3941700 247450 3893000 2761000 2774900 2862500 3185100 3193900 2976000 3349700 1 1 1 1 1 1 1 1 1 1 1 839050000 433730000 405320000 11237 1216 10427 59771;59772;59773 72673;72674;72675 72675 3 LEGMLSQSVSSQYNMAGVR 2 Oxidation (M) 2087.9616 0.96158894 1216 P54105 CLNS1A Methylosome subunit pICln yes yes 0 0 2 0 By MS/MS By MS/MS 5.75 0.433 1 3 2 2 50.809 50.952 3 3.2008E-06 14071 20211116_3445_TMUAki_TMT10x_S_F6 90.872 75.992 5214700 8539600 50924 9442600 9404400 10556000 6675800 8796800 8675300 7155500 8496700 4855700 7971700 522200 9585900 8950800 10646000 6976200 8983600 8731800 7056100 8202000 5 5 4 5 5 5 5 5 5 5 5 3206700 4878100 26076 5705300 7383300 8625300 4883700 5271800 5089400 4075000 4961200 2985800 4554900 332380 5805500 7017100 8531400 5090800 5493400 5164000 4029100 4789900 3 3 2 3 3 3 3 3 3 3 3 2008000 3661500 24848 3737400 2021100 1931200 1792100 3525000 3585900 3080600 3535400 1869900 3416900 189820 3780400 1933700 2114600 1885300 3490200 3567800 3027000 3412100 2 2 2 2 2 2 2 2 2 2 2 2113200000 906020000 1207200000 11238 1216 10427 59774;59775;59776;59777 72676;72677;72678;72679;72680 72679 1631;1632 5 LEGMLSQSVSSQYNMAGVR Oxidation (M) 2071.9667 0.96667432 1216 P54105 CLNS1A Methylosome subunit pICln yes yes 0 0 1 0 By MS/MS By MS/MS 7.4 0.49 3 2 2 3 60.517 60.874 3 1.4003E-06 20165 20211116_3435_TMUAki_TMT10x_P_F7 96.453 74.919 15711000 27400000 346160 25632000 19411000 26982000 17648000 21466000 19600000 19026000 21663000 14631000 25560000 1631000 26294000 18586000 27280000 18054000 22030000 19928000 18683000 20833000 7 7 6 7 7 7 7 7 7 7 7 9358400 15672000 179380 14909000 11314000 20207000 11237000 12259000 11313000 10853000 12176000 8715000 14620000 970450 15342000 10858000 20081000 11405000 12823000 11537000 10657000 11719000 4 4 4 4 4 4 4 4 4 4 4 6352900 11728000 166780 10723000 8096900 6774300 6411200 9207000 8286800 8173500 9486500 5916000 10940000 660520 10951000 7728400 7199500 6649300 9207300 8390900 8025200 9114100 3 3 2 3 3 3 3 3 3 3 3 2856500000 1736700000 1119800000 11239 1216 10427 59778;59779;59780;59781;59782 72681;72682;72683;72684;72685;72686;72687;72688 72682 1631;1632 8 LEGNTVGVEAAR Unmodified 1214.6255 0.62551466 1040 P46060 RANGAP1 Ran GTPase-activating protein 1 yes yes 0 0 0 0 By MS/MS 2 0 1 1 36.444 36.543 2 1.979E-07 8809 20211116_3440_TMUAki_TMT10x_S_F2 136.06 104.3 99989 172620 0 165040 79538 85177 106240 98052 124680 89322 136520 93095 161050 7363.2 167710 76894 91988 106940 98781 126460 87596 131330 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 99989 172620 0 165040 79538 85177 106240 98052 124680 89322 136520 93095 161050 7363.2 167710 76894 91988 106940 98781 126460 87596 131330 1 1 0 1 1 1 1 1 1 1 1 4299900 0 4299900 11240 1040 10428 59783 72689 72689 1 LEGSDVQLLEYEASAAGLIR Unmodified 2133.0954 0.095363533 3013 Q9NY33;Q9NY33-4;Q9NY33-2 DPP3 Dipeptidyl peptidase 3 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 3 1 2 80.164 80.146 2;3 2.3189E-53 28291 20211116_3439_TMUAki_TMT10x_S_F1 217.84 184.89 8010900 12036000 198900 12216000 8141500 11768000 9073900 7283600 6996800 8420200 9593100 7460400 11231000 851350 12443000 7842000 11915000 9091000 7665800 7301100 8176800 9173800 4 4 4 4 4 4 4 4 4 4 4 3810200 5503600 102910 5694700 3048100 6540100 4023000 3486500 3167300 3977900 4427100 3548400 5136200 401130 5808700 2953400 6541900 4003300 3713700 3304300 3864800 4231700 2 2 2 2 2 2 2 2 2 2 2 4200700 6532100 95986 6521100 5093400 5227500 5050900 3797100 3829500 4442300 5166000 3912000 6095100 450230 6634000 4888600 5373000 5087700 3952100 3996700 4312000 4942100 2 2 2 2 2 2 2 2 2 2 2 1298200000 596480000 701730000 11241 3013 10429 59784;59785;59786 72690;72691;72692;72693;72694 72694 5 LEGTDLDCQVGGLICK Unmodified 1776.8386 0.83862026 2351 Q92620;Q92620-2 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 yes no 0 0 0 0 By MS/MS 7 0 1 1 38.62 39.059 4 0.065608 10916 20211116_3435_TMUAki_TMT10x_P_F7 35.303 15.725 379770 752260 1650.7 760500 885060 910550 544290 514680 539790 453740 530710 353610 701970 40101 777500 840170 909460 569780 541450 549020 445660 512230 1 1 1 1 1 1 1 1 1 1 1 379770 752260 1650.7 760500 885060 910550 544290 514680 539790 453740 530710 353610 701970 40101 777500 840170 909460 569780 541450 549020 445660 512230 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 40683000 40683000 0 11242 2351 10430 59787 72695 72695 1 LEGVLAEVAQHYQDTLIR Unmodified 2054.0797 0.07965389 1059 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 0 By matching By MS/MS 7.33 0.471 2 1 1 2 79.195 79.212 3 7.728E-05 27965 20211116_3446_TMUAki_TMT10x_S_F7 77.037 58.898 3009900 4990800 40776 5225700 3793700 3636000 4373800 2832400 2692000 3494700 3800100 2802800 4657800 298520 5290700 3654600 3784100 4354100 2940200 2851600 3385800 3631600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3009900 4990800 40776 5225700 3793700 3636000 4373800 2832400 2692000 3494700 3800100 2802800 4657800 298520 5290700 3654600 3784100 4354100 2940200 2851600 3385800 3631600 1 1 1 1 1 1 1 1 1 1 1 2353200000 451370000 1901900000 11243 1059 10431 59788;59789;59790 72696 72696 1 LEHEYIHNFK Unmodified 1328.6513 0.65133548 1816 Q15555;Q15555-4;Q15555-5;Q15555-3;Q15555-2 MAPRE2 Microtubule-associated protein RP/EB family member 2 no no 0 0 0 0 By MS/MS 5 0 1 1 38.729 38.737 4 0.0013782 10218 20211116_3433_TMUAki_TMT10x_P_F5 80.688 58.815 875570 1291100 0 1438300 2133800 1866700 1028500 1152500 1132200 961890 1203400 815180 1205300 82323 1463300 2017600 1859200 1104200 1202100 1149800 947290 1158600 1 1 0 1 1 1 1 1 1 1 1 875570 1291100 0 1438300 2133800 1866700 1028500 1152500 1132200 961890 1203400 815180 1205300 82323 1463300 2017600 1859200 1104200 1202100 1149800 947290 1158600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 56544000 56544000 0 11244 1816 10432 59791 72697 72697 1 LEHEYIQNFK Unmodified 1319.651 0.65100113 1824 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.22 1.31 1 2 2 2 2 5 4 46.983 47.198 3 6.358E-05 13439 20211116_3433_TMUAki_TMT10x_P_F5 119.22 88.334 46208000 76849000 959930 99441000 118030000 101880000 61880000 75799000 82589000 63462000 75080000 43030000 71793000 5488000 99887000 111810000 103050000 66345000 78014000 82847000 62489000 72659000 13 13 10 13 13 13 13 13 13 13 13 31745000 52819000 688890 65773000 106590000 91808000 51731000 51029000 54670000 43433000 49130000 29561000 49334000 4160200 66573000 100860000 91006000 55432000 53713000 55292000 42731000 47565000 9 9 7 9 9 9 9 9 9 9 9 14464000 24030000 271040 33669000 11440000 10074000 10149000 24770000 27919000 20029000 25950000 13469000 22458000 1327700 33314000 10948000 12049000 10913000 24301000 27555000 19757000 25094000 4 4 3 4 4 4 4 4 4 4 4 7882800000 5580200000 2302500000 11245 1824 10433 59792;59793;59794;59795;59796;59797;59798;59799;59800 72698;72699;72700;72701;72702;72703;72704;72705;72706;72707;72708;72709;72710 72700 13 LEHIAIR Unmodified 850.50249 0.5024864 3398 yes yes 0 0 0 0 By MS/MS By MS/MS 4 1.82 3 2 1 6 4 2 2 9 11 34.305 34.391 3 0.0068589 9477 20211116_3433_TMUAki_TMT10x_P_F5 89.673 34.232 + 5580000 8610600 63612 8668200 7922300 9316600 6756900 7258600 7387500 7185000 7832200 5195700 8034800 517240 8848600 7568400 9404900 6934300 7481700 7503700 7020300 7541700 19 19 10 19 19 19 19 19 19 19 19 3259600 4849000 50986 5051600 5689300 6940300 4215100 4332700 4129500 4180600 4559100 3035400 4525400 343670 5167400 5420600 6895300 4350000 4532300 4220000 4089300 4384700 10 10 6 10 10 10 10 10 10 10 10 2320400 3761600 12626 3616600 2233000 2376300 2541800 2925900 3258000 3004300 3273100 2160400 3509400 173570 3681200 2147800 2509700 2584300 2949400 3283700 2931000 3157000 9 9 4 9 9 9 9 9 9 9 9 2475200000 1458800000 1016400000 11246 3398 10434 59801;59802;59803;59804;59805;59806;59807;59808;59809;59810;59811;59812;59813;59814;59815;59816;59817;59818;59819;59820 72711;72712;72713;72714;72715;72716;72717;72718;72719;72720;72721;72722;72723;72724 72713 14 LEILQIHTK Unmodified 1093.6495 0.64954457 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 By MS/MS 7 0 1 1 53.26 53.969 3 0.00038446 17127 20211116_3435_TMUAki_TMT10x_P_F7 104.82 47.556 4608300 6568200 0 7854400 9385100 9374400 4924400 5564500 5514800 5253400 5616700 4290500 6133700 417270 7944700 8884600 9370600 5246500 5840600 5588100 5143600 5415000 1 1 0 1 1 1 1 1 1 1 1 4608300 6568200 0 7854400 9385100 9374400 4924400 5564500 5514800 5253400 5616700 4290500 6133700 417270 7944700 8884600 9370600 5246500 5840600 5588100 5143600 5415000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6007400000 6007400000 0 11247 1235 10435 59821 72725 72725 1 LEILQQQLQVANEAR Unmodified 1751.953 0.95299681 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.56 0.831 1 3 4 1 5 4 71.063 71.252 2;3 3.259E-82 22522 20211116_3445_TMUAki_TMT10x_S_F6 318.91 231.29 18295000 31099000 297290 29000000 21310000 29085000 22513000 21337000 19950000 22851000 23823000 17036000 29011000 1723200 29735000 20474000 29450000 22694000 22130000 20545000 22255000 22861000 8 8 5 8 8 8 8 8 8 8 8 9291900 15151000 147440 14398000 10048000 18176000 11501000 10543000 10004000 11481000 11683000 8652200 14135000 845510 14798000 9674900 18112000 11543000 11133000 10302000 11174000 11218000 4 4 2 4 4 4 4 4 4 4 4 9003400 15949000 149850 14603000 11263000 10908000 11012000 10794000 9945900 11370000 12140000 8383900 14877000 877720 14937000 10799000 11338000 11150000 10998000 10243000 11081000 11643000 4 4 3 4 4 4 4 4 4 4 4 5666200000 2936300000 2729900000 11248 1741 10436 59822;59823;59824;59825;59826;59827;59828;59829;59830 72726;72727;72728;72729;72730;72731;72732;72733;72734;72735;72736 72733 11 LEKHELIEFR Unmodified 1312.7139 0.71393574 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 1 By MS/MS By MS/MS 5.75 0.829 2 1 1 1 3 44.202 44.441 4 0.00014079 12379 20211116_3433_TMUAki_TMT10x_P_F5 117.25 97.98 1889300 3311900 22613 2874500 3596600 3587000 2370200 3238200 3582900 2984700 3230100 1759300 3088800 198150 2974000 3418900 3602400 2505900 3302400 3579400 2925400 3126800 2 2 1 2 2 2 2 2 2 2 2 757870 1292300 0 1155000 2619300 2310400 1280700 1227900 1464800 1209100 1187000 705630 1205400 85436 1205300 2477600 2258100 1374800 1302500 1472300 1181700 1153600 1 1 0 1 1 1 1 1 1 1 1 1131400 2019600 22613 1719500 977290 1276500 1089500 2010300 2118000 1775500 2043100 1053600 1883400 112720 1768700 941260 1344300 1131100 1999800 2107100 1743800 1973200 1 1 1 1 1 1 1 1 1 1 1 976340000 415640000 560700000 11249 1471 10437 59831;59832;59833;59834 72737;72738 72737 2 LEKPAKYDDIK Unmodified 1318.7133 0.71326704 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 2 By MS/MS 7 0.816 1 1 1 3 41.647 41.882 4 0.00019133 12096 20211116_3435_TMUAki_TMT10x_P_F7 96.591 56.478 10984000 18069000 207410 15707000 32071000 21118000 14434000 10125000 11368000 9909700 14246000 10229000 16851000 1346000 16272000 30317000 20933000 15468000 10843000 11801000 9687300 13654000 4 4 2 4 4 4 4 4 4 4 4 10984000 18069000 207410 15707000 32071000 21118000 14434000 10125000 11368000 9909700 14246000 10229000 16851000 1346000 16272000 30317000 20933000 15468000 10843000 11801000 9687300 13654000 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1285100000 1285100000 0 11250 489 10438 59835;59836;59837 72739;72740;72741;72742 72740 4 LELDIPDDAK Unmodified 1127.571 0.57101948 1800 Q15398;Q15398-3;Q15398-1 DLGAP5 Disks large-associated protein 5 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 3 1 2 54.547 54.373 3 0.046244 17856 20211116_3430_TMUAki_TMT10x_P_F3 42.336 21.548 2418700 3556800 17235 3582600 3116200 4128900 2808400 2568000 2239100 2318100 3041900 2252100 3319000 214400 3661100 2980400 4137400 2847200 2682200 2331300 2274200 2909600 2 2 1 2 2 2 2 2 2 2 2 2418700 3556800 17235 3582600 3116200 4128900 2808400 2568000 2239100 2318100 3041900 2252100 3319000 214400 3661100 2980400 4137400 2847200 2682200 2331300 2274200 2909600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 315790000 315790000 0 11251 1800 10439 59838;59839;59840 72743;72744;72745;72746 72743 4 LELFLPEEYPMAAPK Oxidation (M) 1762.8852 0.88515975 1294 P61088 UBE2N Ubiquitin-conjugating enzyme E2 N yes yes 0 0 1 0 By MS/MS By MS/MS 5.69 1.53 1 2 4 4 3 2 9 7 78.452 78.46 2;3 5.3927E-06 26332 20211116_3433_TMUAki_TMT10x_P_F5 104.22 88.559 50535000 86299000 369300 75573000 57546000 88945000 65018000 59510000 61618000 67022000 66322000 47055000 80486000 4126700 78054000 55379000 89125000 65454000 62216000 63002000 65148000 63833000 13 13 8 13 13 13 13 13 13 13 13 24724000 41732000 89539 35963000 24111000 53391000 29522000 29093000 30126000 32315000 32245000 23020000 38918000 2005200 37356000 23252000 52770000 29681000 30903000 30696000 31428000 31040000 6 6 3 6 6 6 6 6 6 6 6 25812000 44567000 279760 39610000 33435000 35554000 35496000 30417000 31493000 34707000 34077000 24035000 41568000 2121500 40699000 32127000 36355000 35773000 31314000 32305000 33720000 32793000 7 7 5 7 7 7 7 7 7 7 7 17732000000 8117200000 9614600000 11252 1294 10440 59841;59842;59843;59844;59845;59846;59847;59848;59849;59850;59851;59852;59853;59854;59855;59856 72747;72748;72749;72750;72751;72752;72753;72754;72755;72756;72757;72758;72759;72760;72761 72750 1742 15 LELFLPEEYPMAAPK Unmodified 1746.8902 0.89024513 1294 P61088 UBE2N Ubiquitin-conjugating enzyme E2 N yes yes 0 0 0 0 By MS/MS By MS/MS 6.71 0.7 3 3 1 3 4 79.611 79.619 2;3 1.2301E-06 25947 20211116_3445_TMUAki_TMT10x_S_F6 106.17 88.374 28426000 50692000 30555 47661000 29439000 28175000 37935000 12216000 10354000 17089000 31951000 26463000 47289000 1854300 48544000 28407000 29546000 37181000 13372000 12507000 16489000 30153000 7 7 2 7 7 7 7 7 7 7 7 6795900 10345000 0 10835000 6126900 8178900 7397100 2857900 2296700 3768000 6620400 6327200 9654500 490190 10979000 5902500 8376300 7278900 3201500 2713100 3642600 6252600 2 2 0 2 2 2 2 2 2 2 2 21630000 40347000 30555 36826000 23312000 19996000 30538000 9358100 8057700 13320000 25330000 20136000 37635000 1364100 37565000 22505000 21170000 29902000 10170000 9794000 12846000 23901000 5 5 2 5 5 5 5 5 5 5 5 6245600000 1805600000 4440000000 11253 1294 10440 59857;59858;59859;59860;59861;59862;59863 72762;72763;72764;72765;72766;72767;72768 72764 7 LELLHPIIPEQSTFK Unmodified 1763.9822 0.98217168 3256 Q9Y2Z0;Q9Y2Z0-2 SUGT1 Suppressor of G2 allele of SKP1 homolog yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 70.964 71.097 3 1.1427E-09 22728 20211116_3436_TMUAki_TMT10x_P_F8 126.48 106.48 37654000 59386000 97874 64644000 37591000 49694000 41961000 34097000 31790000 35982000 42749000 35057000 55433000 2873400 65353000 36137000 51197000 42020000 35511000 33175000 35064000 40899000 7 7 4 7 7 7 7 7 7 7 7 15131000 23811000 4941.4 25423000 14588000 26132000 16365000 14082000 13136000 14732000 16403000 14086000 22224000 1017500 25832000 14017000 26307000 16407000 14945000 13621000 14361000 15722000 3 3 1 3 3 3 3 3 3 3 3 22523000 35575000 92933 39221000 23003000 23562000 25596000 20014000 18654000 21250000 26346000 20971000 33209000 1855900 39520000 22120000 24889000 25613000 20565000 19554000 20703000 25177000 4 4 3 4 4 4 4 4 4 4 4 5981200000 2660500000 3320800000 11254 3256 10441 59864;59865;59866;59867 72769;72770;72771;72772;72773;72774;72775 72771 7 LELQFPR Unmodified 901.50215 0.50215205 1080 P48681 NES Nestin yes yes 0 0 0 0 By MS/MS 6 0 1 1 58.001 58.071 2 0.087503 16751 20211116_3434_TMUAki_TMT10x_P_F6 60.682 30.07 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11255 1080 10442 59868 72776 72776 1 LELQGPR Unmodified 811.4552 0.45520186 729 P19338 NCL Nucleolin yes yes 0 0 0 0 By MS/MS By MS/MS 3.83 0.687 2 3 1 2 4 37.659 37.673 2 0.0012651 9674 20211116_3431_TMUAki_TMT10x_P_F4 139.54 88.689 5418700 8976200 8872.1 8872200 9178800 8747000 6626300 6304300 6442700 5964000 7280900 5044900 8375300 449150 9056600 8733500 8863700 6849200 6522900 6592200 5838800 6997700 7 7 3 7 7 7 7 7 7 7 7 3057400 5017000 854.51 4943300 6833500 6843200 4044700 3650300 3795700 3520900 4062400 2846200 4681100 249430 5076500 6478400 6782500 4240900 3868600 3881800 3444000 3910600 3 3 1 3 3 3 3 3 3 3 3 2361300 3959200 8017.6 3928900 2345300 1903700 2581600 2654100 2647100 2443100 3218500 2198700 3694200 199710 3980000 2255000 2081200 2608300 2654300 2710300 2394800 3087000 4 4 2 4 4 4 4 4 4 4 4 865640000 512600000 353040000 11256 729 10443 59869;59870;59871;59872;59873;59874 72777;72778;72779;72780;72781;72782 72779 6 LELSDNIISGGLEVLAEK Unmodified 1899.0201 0.020073325 2666 Q9BTT0;Q9BTT0-3 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E yes no 0 0 0 0 By MS/MS By MS/MS 4.33 1.49 1 1 1 1 2 3 3 81.094 81.079 3 4.4002E-12 26271 20211116_3444_TMUAki_TMT10x_S_F5 127.17 107.34 4964200 8554700 33118 8616800 6059000 5070900 6691600 3864100 4186100 4540900 6228100 4622400 7982700 457760 8733200 5827600 5357500 6677000 4009900 4440700 4406900 5944800 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4964200 8554700 33118 8616800 6059000 5070900 6691600 3864100 4186100 4540900 6228100 4622400 7982700 457760 8733200 5827600 5357500 6677000 4009900 4440700 4406900 5944800 3 3 3 3 3 3 3 3 3 3 3 2276400000 802950000 1473500000 11257 2666 10444 59875;59876;59877;59878;59879;59880 72783;72784;72785;72786 72785 4 LELSVLYK Unmodified 963.56408 0.56408361 2463 Q96FW1 OTUB1 Ubiquitin thioesterase OTUB1 yes yes 0 0 0 0 By MS/MS 7 0 1 1 69.129 69.438 2 0.0028004 23844 20211116_3446_TMUAki_TMT10x_S_F7 105.14 57.287 20699000 34343000 487130 35701000 21686000 20320000 20714000 22730000 22005000 22839000 27466000 19276000 32051000 2183900 36095000 20799000 21704000 21101000 22992000 22524000 22301000 26326000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20699000 34343000 487130 35701000 21686000 20320000 20714000 22730000 22005000 22839000 27466000 19276000 32051000 2183900 36095000 20799000 21704000 21101000 22992000 22524000 22301000 26326000 2 2 2 2 2 2 2 2 2 2 2 410600000 0 410600000 11258 2463 10445 59881 72787;72788 72787 2 LEMEMEAAR 2 Oxidation (M) 1110.4685 0.46854502 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 2 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 29.908 29.941 2 0.0025031 6066 20211116_3428_TMUAki_TMT10x_P_F1 78.728 52.652 295730 394670 0 555460 266610 199300 244480 94342 114540 107280 271060 275320 368870 20091 549980 254820 222640 245120 101600 127760 104240 256640 2 2 0 2 2 2 2 2 2 2 2 163030 197520 0 291320 171500 127620 112550 34538 47090 47134 131640 151790 184660 11857 288120 162840 138010 115220 40190 53771 45515 124370 1 1 0 1 1 1 1 1 1 1 1 132690 197150 0 264150 95113 71680 131930 59804 67449 60142 139420 123530 184210 8234.3 261860 91979 84628 129900 61415 73993 58724 132260 1 1 0 1 1 1 1 1 1 1 1 19803000 11612000 8190900 11259 1779 10446 59882;59883;59884 72789;72790 72789 2382;2383 2 LEMEMEAAR Oxidation (M) 1094.4736 0.47363039 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 1 0 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 34.914 35.007 2 0.051209 8070 20211116_3440_TMUAki_TMT10x_S_F2 58.815 38.969 141730 213120 0 263680 102800 86382 156020 53804 67325 82227 155620 131940 199050 8886.6 262770 99760 98204 152730 57199 75506 79136 147390 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 141730 213120 0 263680 102800 86382 156020 53804 67325 82227 155620 131940 199050 8886.6 262770 99760 98204 152730 57199 75506 79136 147390 1 1 0 1 1 1 1 1 1 1 1 15770000 0 15770000 11260 1779 10446 59885;59886 72791;72792 72792 2382;2383 2 LEMEMEAAR Unmodified 1078.4787 0.47871577 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 0 By MS/MS 2 0 1 1 46.177 46.139 2 0.013166 12702 20211116_3440_TMUAki_TMT10x_S_F2 64.485 49.991 2306500 3951100 53329 5342900 1959400 1641700 1747300 3772100 3256800 3192800 3637400 2148000 3692000 236060 5297000 1876700 1948700 1830200 3710300 3260700 3142100 3497100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2306500 3951100 53329 5342900 1959400 1641700 1747300 3772100 3256800 3192800 3637400 2148000 3692000 236060 5297000 1876700 1948700 1830200 3710300 3260700 3142100 3497100 1 1 1 1 1 1 1 1 1 1 1 54837000 0 54837000 11261 1779 10446 59887 72793 72793 1 LEMYNILK Unmodified 1022.5471 0.54705333 819 P26639;P26639-2 TARS Threonine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By matching 7.33 0.471 2 1 2 1 69.249 69.542 2 0.00050723 23319 20211116_3435_TMUAki_TMT10x_P_F7 139.19 84.778 22642000 34298000 326770 37181000 29911000 35206000 30641000 13605000 10809000 14972000 25876000 21084000 32015000 2283500 37698000 28718000 35502000 30428000 14964000 12399000 14566000 24496000 3 3 3 3 3 3 3 3 3 3 3 22642000 34298000 326770 37181000 29911000 35206000 30641000 13605000 10809000 14972000 25876000 21084000 32015000 2283500 37698000 28718000 35502000 30428000 14964000 12399000 14566000 24496000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1512800000 1286500000 226300000 11262 819 10447 59888;59889;59890 72794;72795;72796 72794 3 LENDQIESLR Unmodified 1215.6095 0.60953025 1254 P56192 MARS Methionine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 45.515 45.295 2 8.8646E-10 13720 20211116_3429_TMUAki_TMT10x_P_F2 192.12 109.66 3630600 5619700 9253.5 7472800 7995900 5804000 4114900 6291800 7325800 4923500 6205300 3380400 5250700 353710 7467700 7568700 6026600 4476300 6331500 7272500 4864900 6020700 3 3 1 3 3 3 3 3 3 3 3 1574900 2371000 0 2993100 6278500 4294700 2425300 2567400 3070600 1966600 2470600 1466300 2214700 189090 3029000 5922800 4256100 2681500 2679500 3074300 1945400 2401900 1 1 0 1 1 1 1 1 1 1 1 2055700 3248700 9253.5 4479800 1717400 1509300 1689700 3724400 4255200 2957000 3734600 1914000 3036000 164620 4438700 1646000 1770500 1794800 3652000 4198200 2919500 3618800 2 2 1 2 2 2 2 2 2 2 2 283780000 170080000 113700000 11263 1254 10448 59891;59892;59893;59894 72797;72798;72799;72800 72797 4 LENGEIETIAR Unmodified 1243.6408 0.64083038 2878 Q9HDC9;Q9HDC9-2 APMAP Adipocyte plasma membrane-associated protein yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 47.186 46.868 2 2.2575E-05 14336 20211116_3429_TMUAki_TMT10x_P_F2 109.39 75.002 2480300 3999000 0 4939300 4679500 4101400 3038800 3010900 3075200 2571500 3479700 2309200 3735000 216550 4960000 4444300 4205400 3169300 3103100 3141300 2529600 3344200 2 2 0 2 2 2 2 2 2 2 2 1430200 2383100 0 2886300 3666000 3255800 2123000 1811600 1762300 1454600 2026400 1331500 2225600 132800 2914400 3475200 3261500 2223000 1904100 1818000 1435300 1946600 1 1 0 1 1 1 1 1 1 1 1 1050100 1615900 0 2053100 1013400 845660 915800 1199300 1312900 1116900 1453300 977680 1509500 83755 2045600 969100 943930 946330 1199100 1323300 1094200 1397600 1 1 0 1 1 1 1 1 1 1 1 121880000 77927000 43952000 11264 2878 10449 59895;59896 72801;72802 72801 2 LENGELEHIRPK Unmodified 1433.7627 0.76267685 1770 Q15102 PAFAH1B3 Platelet-activating factor acetylhydrolase IB subunit gamma yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 38.17 38.228 4 4.621E-15 8794 20211116_3444_TMUAki_TMT10x_S_F5 180.61 151.07 3391800 5307100 55010 6437300 9881400 7209200 4635000 4311100 5248800 3600500 5628500 3158500 4956300 423360 6498800 9346200 7231500 4994800 4508200 5326300 3545700 5417900 3 3 3 3 3 3 3 3 3 3 3 2575600 4052000 41255 4811400 9005600 6433200 3696200 3176400 3907400 2637600 4178800 2398400 3783800 342040 4879000 8504000 6380500 4033400 3377800 3975500 2598200 4022700 2 2 2 2 2 2 2 2 2 2 2 816260 1255100 13755 1625900 875730 776010 938740 1134700 1341300 962880 1449800 760120 1172500 81326 1619800 842110 851030 961370 1130400 1350800 947470 1395200 1 1 1 1 1 1 1 1 1 1 1 740450000 568720000 171730000 11265 1770 10450 59897;59898;59899 72803;72804;72805 72805 3 LENLGIPEEELLR Unmodified 1523.8195 0.81952302 1485 Q01658 DR1 Protein Dr1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 75.561 75.475 2 4.5636E-19 27511 20211116_3441_TMUAki_TMT10x_S_F3 190.78 138.84 47120000 82585000 421410 72105000 53557000 69451000 56481000 48356000 49812000 53456000 58432000 43870000 77021000 3567300 74259000 51399000 70442000 56932000 50382000 51273000 51998000 56101000 8 8 5 8 8 8 8 8 8 8 8 21784000 36139000 158560 31182000 21803000 39994000 24591000 21359000 21336000 23521000 25243000 20279000 33703000 1313700 32293000 20943000 39781000 24697000 22722000 21986000 22883000 24230000 3 3 1 3 3 3 3 3 3 3 3 25336000 46446000 262850 40923000 31755000 29457000 31890000 26997000 28476000 29935000 33189000 23591000 43318000 2253600 41967000 30456000 30661000 32235000 27660000 29286000 29115000 31871000 5 5 4 5 5 5 5 5 5 5 5 2542600000 1156900000 1385700000 11266 1485 10451 59900;59901;59902;59903;59904;59905;59906;59907 72806;72807;72808;72809;72810;72811;72812;72813;72814;72815 72814 10 LENYPIPEPGPNEVLLR Unmodified 1949.0258 0.025827405 1473 Q00796;Q00796-2 SORD Sorbitol dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS 4.33 1.03 3 4 3 2 4 8 72.593 72.534 2;3 2.431E-45 25337 20211116_3430_TMUAki_TMT10x_P_F3 208 167 17908000 30321000 83400 28218000 20111000 23949000 21992000 18730000 17860000 20530000 22439000 16673000 28285000 1365700 28872000 19321000 24543000 22081000 19361000 18512000 19977000 21504000 11 11 3 11 11 11 11 11 11 11 11 4973700 8259900 0 7820700 4908000 8807900 5831100 4884100 4845200 5395700 5971800 4630200 7705800 314170 8024100 4722900 8823800 5836000 5179100 5012300 5248600 5725900 3 3 0 3 3 3 3 3 3 3 3 12935000 22061000 83400 20397000 15203000 15141000 16161000 13846000 13014000 15134000 16467000 12043000 20579000 1051500 20847000 14598000 15720000 16245000 14182000 13500000 14728000 15778000 8 8 3 8 8 8 8 8 8 8 8 3875700000 1354300000 2521400000 11267 1473 10452 59908;59909;59910;59911;59912;59913;59914;59915;59916;59917;59918;59919 72816;72817;72818;72819;72820;72821;72822;72823;72824;72825;72826;72827;72828;72829;72830;72831 72816 16 LEPAFLSGLR Unmodified 1101.6182 0.61824444 3294 Q9Y4A5;Q9Y4A5-2 TRRAP Transformation/transcription domain-associated protein yes no 0 0 0 0 By MS/MS 8 0 1 1 68.159 68.28 2 0.011298 21597 20211116_3436_TMUAki_TMT10x_P_F8 64.927 18.361 3232700 5004300 63577 5392600 4026800 7082200 4211900 4282200 3858600 3846000 4557100 3010500 4671000 338390 5499200 3869600 7047700 4251700 4482100 3965700 3774200 4374400 1 1 1 1 1 1 1 1 1 1 1 3232700 5004300 63577 5392600 4026800 7082200 4211900 4282200 3858600 3846000 4557100 3010500 4671000 338390 5499200 3869600 7047700 4251700 4482100 3965700 3774200 4374400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 214950000 214950000 0 11268 3294 10453 59920 72832 72832 1 LEPANEEHNVETAEDSEIR Unmodified 2180.9822 0.98218427 1789 Q15361 TTF1 Transcription termination factor 1 yes yes 0 0 0 0 By MS/MS 1 0 1 1 40.257 40.118 3 1.2684E-17 12042 20211116_3439_TMUAki_TMT10x_S_F1 145.21 127.07 164940 264690 4750.7 358310 102280 121740 81797 290240 328410 245090 281550 153610 247340 17225 355380 97842 142400 91675 285240 321640 241230 273050 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 164940 264690 4750.7 358310 102280 121740 81797 290240 328410 245090 281550 153610 247340 17225 355380 97842 142400 91675 285240 321640 241230 273050 1 1 1 1 1 1 1 1 1 1 1 26273000 0 26273000 11269 1789 10454 59921 72833 72833 1 LEPHKPQQIPIDSTVSFGASTR Unmodified 2407.2496 0.24957276 1581 Q12972 PPP1R8 Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay yes yes 0 0 0 1 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 50.382 50.626 4 8.9444E-20 13838 20211116_3447_TMUAki_TMT10x_S_F8 154.84 146.66 15581000 26169000 390030 26619000 21555000 28324000 17065000 24192000 20495000 20783000 22702000 14509000 24421000 1376800 27149000 20574000 28656000 17651000 24703000 20779000 20439000 21831000 6 6 3 6 6 6 6 6 6 6 6 8417400 14389000 93012 14021000 13899000 21531000 10920000 13032000 11138000 10706000 12331000 7837800 13425000 535150 14442000 13255000 21280000 11239000 13610000 11364000 10552000 11859000 3 3 1 3 3 3 3 3 3 3 3 7163100 11780000 297020 12598000 7656600 6792700 6145300 11159000 9357500 10077000 10371000 6671500 10995000 841620 12708000 7319200 7376200 6411900 11093000 9415000 9886300 9972800 3 3 2 3 3 3 3 3 3 3 3 6263300000 3486500000 2776800000 11270 1581 10455 59922;59923;59924;59925;59926 72834;72835;72836;72837;72838;72839 72838 6 LEPKPQPPVAEATPR Unmodified 1628.8886 0.88860564 3118 Q9UHD8-5;Q9UHD8;Q9UHD8-2;Q9UHD8-7;Q9UHD8-3 SEPT9 Septin-9 yes no 0 0 0 1 By MS/MS By MS/MS 5.25 0.433 3 1 3 1 38.863 38.932 3 2.9967E-14 10390 20211116_3433_TMUAki_TMT10x_P_F5 127.32 99.64 4568200 7189900 40415 8003500 8021800 7418300 5510200 7293400 7737300 5601100 7238500 4253300 6711900 413570 8098700 7627700 7590500 5789500 7371000 7756200 5540100 6998200 5 5 2 5 5 5 5 5 5 5 5 2171700 3370800 8710.1 3835200 6038700 5485500 3107800 3639000 3879300 2949000 3545600 2021900 3147100 212620 3904400 5715100 5445000 3329500 3772500 3900900 2908600 3430600 3 3 1 3 3 3 3 3 3 3 3 2396500 3819100 31705 4168300 1983100 1932700 2402400 3654300 3858000 2652100 3692900 2231500 3564900 200950 4194200 1912600 2145500 2460000 3598600 3855300 2631400 3567600 2 2 1 2 2 2 2 2 2 2 2 251630000 113470000 138160000 11271 3118 10456 59927;59928;59929;59930 72840;72841;72842;72843;72844;72845;72846 72840 7 LEPMIVPDLDLK Oxidation (M) 1397.7476 0.74760363 3359 Q9Y6Y8;Q9Y6Y8-2 SEC23IP SEC23-interacting protein yes no 0 0 1 0 By MS/MS 4 0 1 1 75.608 75.519 3 0.077132 25277 20211116_3442_TMUAki_TMT10x_S_F4 40.066 15.274 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11272 3359 10457 59931 72847 72847 3298 1 LEQDEYALR Unmodified 1135.551 0.55095274 1237 P55084;P55084-2 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 0 0 0 0 By matching By MS/MS 2.33 0.471 2 1 1 2 43.96 43.757 2 0.00039205 11710 20211116_3440_TMUAki_TMT10x_S_F2 124.95 91.311 719140 1234800 0 1495300 756530 573440 670330 770540 938590 645870 1084400 669560 1153200 56430 1493300 722990 645470 692750 769750 948290 635930 1041500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 719140 1234800 0 1495300 756530 573440 670330 770540 938590 645870 1084400 669560 1153200 56430 1493300 722990 645470 692750 769750 948290 635930 1041500 1 1 0 1 1 1 1 1 1 1 1 110240000 65633000 44605000 11273 1237 10458 59932;59933;59934 72848 72848 1 LEQELFSGGNTGINFEK Unmodified 1881.9109 0.91085723 104 O00571;O00571-2;O15523;O15523-2;O15523-3 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 0 0 By MS/MS By MS/MS 4.78 1.31 2 2 2 2 1 4 5 76.349 76.306 3 1.681E-29 25138 20211116_3431_TMUAki_TMT10x_P_F4 188.58 171.5 35919000 61605000 576020 63178000 34965000 42742000 40870000 29241000 29994000 33374000 41325000 33448000 57490000 3470500 64035000 33707000 44499000 40811000 30535000 31392000 32424000 39514000 8 8 7 8 8 8 8 8 8 8 8 13358000 21115000 92580 23585000 12924000 19890000 14143000 9784100 10105000 11835000 14227000 12438000 19712000 1156800 23831000 12427000 20263000 14157000 10519000 10603000 11474000 13597000 3 3 2 3 3 3 3 3 3 3 3 22561000 40490000 483440 39593000 22041000 22852000 26728000 19457000 19889000 21539000 27097000 21010000 37778000 2313700 40205000 21281000 24236000 26654000 20016000 20789000 20950000 25917000 5 5 5 5 5 5 5 5 5 5 5 6600100000 3590100000 3010000000 11274 104 10459 59935;59936;59937;59938;59939;59940;59941;59942;59943 72849;72850;72851;72852;72853;72854;72855;72856;72857 72849 9 LEQGQAIDDLMPAQK Oxidation (M) 1671.8138 0.81378572 642 P12277 CKB Creatine kinase B-type yes yes 0 0 1 0 By MS/MS By MS/MS 3.6 1.02 1 1 2 1 3 2 53.001 53.062 3 2.4346E-07 15561 20211116_3431_TMUAki_TMT10x_P_F4 118.52 104.62 23318000 38220000 433320 48391000 42263000 50095000 27094000 42557000 46672000 34414000 39084000 21715000 35701000 2592000 48674000 40168000 50759000 28882000 43405000 46355000 33946000 37937000 6 6 5 6 6 6 6 6 6 6 6 13169000 20106000 152220 26675000 32985000 42469000 20358000 24630000 27426000 20046000 21461000 12262000 18786000 1500800 26985000 31319000 41889000 21529000 25805000 27381000 19767000 20888000 3 3 2 3 3 3 3 3 3 3 3 10150000 18113000 281100 21716000 9277800 7626100 6735800 17926000 19246000 14368000 17622000 9452600 16915000 1091300 21689000 8849100 8869600 7352600 17600000 18974000 14179000 17050000 3 3 3 3 3 3 3 3 3 3 3 3144300000 2247900000 896320000 11275 642 10460 59944;59945;59946;59947;59948 72858;72859;72860;72861;72862;72863;72864 72860 680 7 LEQGQAIDDLMPAQK Unmodified 1655.8189 0.8188711 642 P12277 CKB Creatine kinase B-type yes yes 0 0 0 0 By MS/MS 4.67 0.471 1 2 3 63.105 63.241 3 0.00013612 19714 20211116_3431_TMUAki_TMT10x_P_F4 79.337 75.617 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11276 642 10460 59949;59950;59951 72865;72866;72867 72865 3 LEQGYELQFR Unmodified 1281.6354 0.63535107 933 P35573 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes yes 0 0 0 0 By MS/MS 4 0 1 1 55.926 56.077 2 7.4364E-05 16879 20211116_3431_TMUAki_TMT10x_P_F4 128.03 77.069 3193900 4638300 8708.6 5291600 4501900 6032300 3778600 3285700 3251700 3393900 3968400 2973900 4330500 291230 5363200 4299000 6037900 3854300 3482500 3356500 3310200 3806000 1 1 1 1 1 1 1 1 1 1 1 3193900 4638300 8708.6 5291600 4501900 6032300 3778600 3285700 3251700 3393900 3968400 2973900 4330500 291230 5363200 4299000 6037900 3854300 3482500 3356500 3310200 3806000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 705900000 705900000 0 11277 933 10461 59952 72868 72868 1 LEQQVPVNQVFGQDEMIDVIGVTK Oxidation (M) 2701.3633 0.36328189 975 P39023 RPL3 60S ribosomal protein L3 yes yes 0 0 1 0 By MS/MS By MS/MS 4.56 1.17 2 3 1 3 4 5 77.941 77.905 2;3 2.4979E-07 25859 20211116_3431_TMUAki_TMT10x_P_F4 95.197 81.794 4537800 8029200 89938 6884100 5146600 8132900 5667600 5995700 5420400 5940800 6208600 4225500 7487800 357490 7122400 4951500 8160200 5714000 6202300 5553100 5804300 5964800 5 5 3 5 5 5 5 5 5 5 5 2842900 4747800 89938 3930500 2643400 5929400 3133200 3736800 3622100 3468900 3656200 2647700 4427200 316720 4097300 2552400 5867900 3167700 3902000 3664700 3399000 3526000 3 3 3 3 3 3 3 3 3 3 3 1694900 3281300 0 2953600 2503300 2203600 2534400 2258900 1798300 2471800 2552400 1577900 3060600 40771 3025100 2399100 2292300 2546400 2300200 1888400 2405400 2438900 2 2 0 2 2 2 2 2 2 2 2 6990300000 2810900000 4179400000 11278 975 10462 59953;59954;59955;59956;59957;59958;59959;59960;59961 72869;72870;72871;72872;72873;72874 72870 1250 6 LEQQVPVNQVFGQDEMIDVIGVTK Unmodified 2685.3684 0.36836727 975 P39023 RPL3 60S ribosomal protein L3 yes yes 0 0 0 0 By MS/MS By MS/MS 4.71 1.03 1 2 2 2 4 3 79.336 79.324 3 1.3781E-22 25559 20211116_3444_TMUAki_TMT10x_S_F5 150.09 134.5 8425500 13385000 60993 13974000 9241400 8545200 9964800 5017900 4112700 5461700 8760200 7844900 12492000 568810 14133000 8878600 8960900 9888800 5293100 4605000 5315900 8306800 6 6 3 6 6 6 6 6 6 6 6 2878200 4066600 3769.6 4226800 2546200 3952200 3096400 1791400 1758100 2094600 2932900 2679800 3795200 85320 4296600 2454100 3994600 3070600 1939500 1888800 2033200 2792900 3 3 1 3 3 3 3 3 3 3 3 5547300 9318400 57224 9747400 6695200 4593000 6868400 3226500 2354600 3367100 5827300 5165100 8696600 483490 9836600 6424500 4966200 6818200 3353600 2716200 3282700 5513900 3 3 2 3 3 3 3 3 3 3 3 6222200000 2894100000 3328100000 11279 975 10462 59962;59963;59964;59965;59966;59967;59968 72875;72876;72877;72878;72879;72880;72881 72879 7 LERENAEVDGDDDAEEMEAKAED Oxidation (M) 2595.0402 0.040229012 504 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 0 0 1 2 By MS/MS By MS/MS 1 0 2 1 1 39.347 39.291 3 1.2617E-35 9658 20211116_3428_TMUAki_TMT10x_P_F1 181.69 171.29 2756500 4597000 11721 7239000 8238800 6645700 3940800 4867200 7962800 2731900 5468100 2566600 4299400 301310 7189500 7791400 6766800 4346500 4974500 7836200 2756100 5352100 4 4 2 4 4 4 4 4 4 4 4 1680000 2735500 0 4279400 7480100 6074600 3353100 2646100 4200200 1569700 3043700 1564200 2558300 205590 4283500 7067600 6000600 3643200 2831200 4194900 1577400 2972000 2 2 0 2 2 2 2 2 2 2 2 1076500 1861500 11721 2959600 758620 571030 587660 2221100 3762600 1162200 2424300 1002400 1741100 95720 2906000 723810 766140 703310 2143300 3641400 1178700 2380100 2 2 2 2 2 2 2 2 2 2 2 639100000 351960000 287140000 11280 504 10463 59969;59970 72882;72883;72884;72885 72882 406 4 LERENAEVDGDDDAEEMEAKAED Unmodified 2579.0453 0.04531439 504 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 0 0 0 2 By MS/MS By MS/MS 1 0 2 1 1 49.4 49.269 3 2.2994E-36 13730 20211116_3428_TMUAki_TMT10x_P_F1 193.42 190.73 7581500 12237000 30145 17352000 8473500 6583800 5943900 4197600 3166600 4536900 8978500 7059000 11437000 621580 17180000 8059900 7317700 6075400 4398400 3549200 4417000 8481300 3 3 1 3 3 3 3 3 3 3 3 2531400 4090400 30145 5437900 5897900 4855600 4464000 1286800 994250 1551000 2812100 2357200 3821900 285120 5443700 5621000 4902200 4495600 1496300 1227800 1503900 2656500 1 1 1 1 1 1 1 1 1 1 1 5050100 8146400 0 11914000 2575600 1728200 1479900 2910800 2172300 2985900 6166400 4701800 7615600 336460 11736000 2438900 2415500 1579900 2902100 2321400 2913100 5824800 2 2 0 2 2 2 2 2 2 2 2 951490000 680080000 271410000 11281 504 10463 59971;59972 72886;72887;72888 72886 3 LESALTELEQLRK Unmodified 1528.8461 0.84607213 641 P12270;P12270-2 TPR Nucleoprotein TPR yes no 0 0 0 1 By MS/MS By MS/MS 6 1.1 1 2 2 3 2 72.881 72.978 3 2.7231E-09 23360 20211116_3445_TMUAki_TMT10x_S_F6 132.31 108.38 110070000 181450000 450530 161030000 128350000 204550000 137810000 135400000 134640000 151820000 146420000 102490000 169230000 9580700 166370000 123320000 204140000 139190000 141640000 137530000 147600000 140880000 7 7 5 7 7 7 7 7 7 7 7 68751000 112220000 367650 97139000 78516000 151550000 87798000 84076000 82625000 95494000 91149000 64017000 104660000 6166000 100980000 75540000 149510000 88411000 89229000 84586000 92794000 87665000 3 3 2 3 3 3 3 3 3 3 3 41319000 69227000 82888 63886000 49833000 53002000 50013000 51321000 52019000 56329000 55269000 38471000 64576000 3414700 65389000 47779000 54629000 50783000 52414000 52948000 54808000 53215000 4 4 3 4 4 4 4 4 4 4 4 2516700000 1335600000 1181100000 11282 641 10464 59973;59974;59975;59976;59977 72889;72890;72891;72892;72893;72894;72895;72896 72893 8 LESDYEILER Unmodified 1265.6139 0.61394692 1002 P41252 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 57.867 57.716 2 5.7861E-05 17142 20211116_3428_TMUAki_TMT10x_P_F1 131.12 88.925 9838100 16175000 112380 18352000 12646000 14028000 11225000 12460000 12742000 12189000 13981000 9160900 15101000 936390 18503000 12095000 14522000 11508000 12739000 12940000 11916000 13449000 3 3 2 3 3 3 3 3 3 3 3 3690300 5722600 0 6703700 7196500 8673700 5807300 4855600 5089200 4618300 5083500 3435800 5343500 331740 6799100 6863900 8628900 5941000 5122400 5208600 4520200 4904000 1 1 0 1 1 1 1 1 1 1 1 6147800 10453000 112380 11648000 5449100 5354300 5418100 7604200 7652600 7571100 8897700 5725000 9758000 604650 11704000 5230900 5893400 5566600 7616900 7731600 7395700 8544700 2 2 2 2 2 2 2 2 2 2 2 674050000 460820000 213230000 11283 1002 10465 59978;59979 72897;72898;72899 72897 3 LESEEEGVPSTAIR Unmodified 1515.7417 0.74166663 517 P06493;P06493-2 CDK1 Cyclin-dependent kinase 1 yes no 0 0 0 0 By MS/MS By MS/MS 1.4 0.49 3 2 2 3 44.245 44.14 2;3 1.0707E-50 11700 20211116_3428_TMUAki_TMT10x_P_F1 278.51 227.44 1126100 1761500 8115.7 2533100 4264800 3663400 1846200 1642500 1928400 1290800 1830000 1048500 1646500 133370 2546600 4028200 3616900 2001700 1761500 1954700 1275200 1768400 2 2 1 2 2 2 2 2 2 2 2 1126100 1761500 8115.7 2533100 4264800 3663400 1846200 1642500 1928400 1290800 1830000 1048500 1646500 133370 2546600 4028200 3616900 2001700 1761500 1954700 1275200 1768400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 137210000 103490000 33726000 11284 517 10466 59980;59981;59982;59983;59984 72900;72901;72902;72903;72904 72900 5 LESHLYR Unmodified 916.47667 0.47666558 3169 Q9ULD4;Q9ULD4-3;Q9ULD4-2 BRPF3 Bromodomain and PHD finger-containing protein 3 yes no 0 0 0 0 By MS/MS 1 0 1 1 32.97 32.97 3 0.0041318 7195 20211116_3428_TMUAki_TMT10x_P_F1 97.473 32.221 113810 194870 7981.1 213040 283950 259370 183140 162830 144720 153050 172370 106030 181900 19257 216740 270210 259200 189850 170140 149890 149880 165420 1 1 1 1 1 1 1 1 1 1 1 113810 194870 7981.1 213040 283950 259370 183140 162830 144720 153050 172370 106030 181900 19257 216740 270210 259200 189850 170140 149890 149880 165420 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18491000 18491000 0 11285 3169 10467 59985 72905 72905 1 LESLSAATTFEPLEPVKDTDIQGFLK Unmodified 2848.4746 0.47460648 2184 Q8N1F7 NUP93 Nuclear pore complex protein Nup93 yes yes 0 0 0 1 By matching By MS/MS 6.4 1.02 1 2 1 1 2 3 79.111 79.113 4 3.1768E-12 27911 20211116_3446_TMUAki_TMT10x_S_F7 114.2 101.65 10416000 18004000 62275 16200000 13040000 11159000 13617000 8389100 7755300 9092900 12470000 9697400 16793000 831290 16578000 12513000 11617000 13601000 8690300 8313400 8851600 11883000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10416000 18004000 62275 16200000 13040000 11159000 13617000 8389100 7755300 9092900 12470000 9697400 16793000 831290 16578000 12513000 11617000 13601000 8690300 8313400 8851600 11883000 3 3 2 3 3 3 3 3 3 3 3 5758100000 2022500000 3735700000 11286 2184 10468 59986;59987;59988;59989;59990 72906;72907;72908 72908 3 LETGAPRPPATVTNAVSWR Unmodified 2022.0647 0.064672527 2717 Q9BXS5;Q9BXS5-2 AP1M1 AP-1 complex subunit mu-1 yes no 0 0 0 1 By matching By MS/MS 1.5 0.5 1 1 1 1 51.645 51.561 3 0.00023897 14997 20211116_3440_TMUAki_TMT10x_S_F2 64.422 44.041 1236600 2209100 10968 2586700 1239700 1009900 1162300 1750100 1584400 1635300 1836900 1151400 2062800 112780 2588600 1187400 1142700 1196100 1738600 1602300 1601800 1764100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1236600 2209100 10968 2586700 1239700 1009900 1162300 1750100 1584400 1635300 1836900 1151400 2062800 112780 2588600 1187400 1142700 1196100 1738600 1602300 1601800 1764100 1 1 1 1 1 1 1 1 1 1 1 344360000 167780000 176570000 11287 2717 10469 59991;59992 72909 72909 1 LETVGSIFSR Unmodified 1107.5924 0.59242362 3281 Q9Y3D9 MRPS23 28S ribosomal protein S23, mitochondrial yes yes 0 0 0 0 By MS/MS 8 0 1 1 63.61 63.791 2 0.0074175 19666 20211116_3436_TMUAki_TMT10x_P_F8 72.275 42.09 7687000 12333000 65673 13497000 7998700 10881000 7327000 6027700 5691300 5165600 7830000 7157900 11512000 702880 13648000 7656600 11138000 7416600 6347700 5937400 5080500 7487100 1 1 1 1 1 1 1 1 1 1 1 7687000 12333000 65673 13497000 7998700 10881000 7327000 6027700 5691300 5165600 7830000 7157900 11512000 702880 13648000 7656600 11138000 7416600 6347700 5937400 5080500 7487100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 577620000 577620000 0 11288 3281 10470 59993 72910 72910 1 LEVAPISDIIAIK Unmodified 1380.8228 0.82281749 659 P13804;P13804-2 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 79.042 79.058 2;3 5.1597E-13 27865 20211116_3446_TMUAki_TMT10x_S_F7 143.24 87.671 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11289 659 10471 59994;59995 72911;72912 72912 2 LEVEANNAFDQYR Unmodified 1567.7267 0.72668527 1063 P47756-2;P47756 CAPZB F-actin-capping protein subunit beta yes no 0 0 0 0 By MS/MS 3 0 1 1 57.18 56.948 3 0.065346 18903 20211116_3430_TMUAki_TMT10x_P_F3 40.941 11.586 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11290 1063 10472 59996 72913 72913 1 LEVGTETIIDK Unmodified 1216.6551 0.65508346 1483 Q01581;P54868;P54868-3;P54868-2 HMGCS1;HMGCS2 Hydroxymethylglutaryl-CoA synthase, cytoplasmic;Hydroxymethylglutaryl-CoA synthase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 60.574 60.449 2 7.2789E-16 19163 20211116_3442_TMUAki_TMT10x_S_F4 208.6 149.62 2941900 4551900 0 4526000 2435000 2342100 2378900 3592600 3654600 3374000 3627000 2738300 4247300 130500 4586400 2326500 2548700 2455400 3583100 3661100 3304200 3499700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2941900 4551900 0 4526000 2435000 2342100 2378900 3592600 3654600 3374000 3627000 2738300 4247300 130500 4586400 2326500 2548700 2455400 3583100 3661100 3304200 3499700 1 1 0 1 1 1 1 1 1 1 1 407810000 0 407810000 11291 1483 10473 59997;59998 72914;72915 72915 2 LEVIIPERYPFEPPQIR Unmodified 2095.1466 0.14661124 2890 Q9NPD8 UBE2T Ubiquitin-conjugating enzyme E2 T yes yes 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 75.299 75.342 3 1.0963E-35 23900 20211116_3447_TMUAki_TMT10x_S_F8 200.67 170.52 14153000 23859000 138680 22514000 15545000 17517000 16383000 10592000 9167900 10952000 15818000 13179000 22258000 1300300 22988000 14933000 17998000 16351000 11130000 9878400 10681000 15053000 6 6 5 6 6 6 6 6 6 6 6 4797500 7943000 72854 7236100 3905600 7347700 4711200 3450900 3287000 4039900 5161300 4467500 7409000 453150 7433600 3769500 7390900 4692500 3722900 3472800 3921300 4920900 2 2 2 2 2 2 2 2 2 2 2 9355600 15916000 65824 15278000 11640000 10170000 11672000 7141200 5880900 6912100 10656000 8711300 14849000 847160 15554000 11164000 10607000 11658000 7406700 6405600 6760100 10132000 4 4 3 4 4 4 4 4 4 4 4 3575600000 1587800000 1987800000 11292 2890 10474 59999;60000;60001;60002 72916;72917;72918;72919;72920;72921 72920 6 LEVQAEEER Unmodified 1101.5302 0.5302173 2796 Q9H307 PNN Pinin yes yes 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 31.17 31.188 2 2.8085E-08 9812 20211116_3439_TMUAki_TMT10x_S_F1 216.42 178.44 3636900 5721500 7897.4 5920300 4217200 5201300 4381100 3839900 4378400 3927400 4873600 3386200 5339600 304620 6014900 4047500 5312500 4435200 3975500 4472000 3832100 4686100 4 4 2 4 4 4 4 4 4 4 4 1457400 2242500 0 2172600 2389300 3073400 1882800 1509200 1676500 1507900 1807500 1356800 2092300 121490 2234800 2277400 3040300 1929900 1613400 1719200 1472700 1739600 2 2 0 2 2 2 2 2 2 2 2 2179500 3479000 7897.4 3747800 1828000 2127900 2498300 2330600 2702000 2419500 3066100 2029400 3247300 183130 3780100 1770100 2272200 2505400 2362100 2752800 2359300 2946500 2 2 2 2 2 2 2 2 2 2 2 375010000 193840000 181170000 11293 2796 10475 60003;60004;60005 72922;72923;72924;72925 72924 4 LEVQAEEERK Unmodified 1229.6252 0.62518031 2796 Q9H307 PNN Pinin yes yes 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 34.037 33.883 3 6.4345E-07 10537 20211116_3441_TMUAki_TMT10x_S_F3 155.99 108.05 3900700 5298100 37848 6911800 3917100 3745500 3472700 1708100 2198800 2009400 3683300 3632100 4949800 353530 6889800 3746600 3965100 3506300 1848500 2345400 1950000 3507200 3 3 2 3 3 3 3 3 3 3 3 2746400 3622100 24698 4655100 3299700 2991300 2380100 1148700 1493800 1391700 2570500 2557300 3383600 253100 4651100 3141900 3108500 2434900 1268200 1596700 1349200 2446400 2 2 1 2 2 2 2 2 2 2 2 1154200 1676100 13150 2256700 617350 754190 1092600 559380 705010 617650 1112800 1074800 1566100 100430 2238700 604680 856610 1071400 580320 748650 600830 1060800 1 1 1 1 1 1 1 1 1 1 1 190720000 110520000 80200000 11294 2796 10476 60006;60007;60008;60009 72926;72927;72928;72929 72929 4 LEVQATDREENK Unmodified 1430.7001 0.70013617 624 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.17 1.07 2 2 1 1 3 3 33.436 33.379 3 2.481E-12 10304 20211116_3441_TMUAki_TMT10x_S_F3 174.95 122.13 8983500 13326000 152660 16385000 9174400 10618000 7732700 6224000 7873200 6538700 10179000 8365600 12446000 879170 16413000 8769200 11074000 7923300 6559400 8085300 6373100 9748000 7 7 5 7 7 7 7 7 7 7 7 4320800 6447500 47170 7327700 6962700 7240500 4842800 3454100 3972900 3317000 5257800 4023500 6019400 437730 7412000 6625700 7296400 4996200 3698900 4125400 3245200 5032200 4 4 3 4 4 4 4 4 4 4 4 4662700 6878400 105490 9057000 2211700 3378000 2889800 2769900 3900300 3221700 4921400 4342100 6426400 441430 9000800 2143500 3777900 2927100 2860500 3959900 3127900 4715800 3 3 2 3 3 3 3 3 3 3 3 787830000 395070000 392760000 11295 624 10477 60010;60011;60012;60013;60014;60015 72930;72931;72932;72933;72934;72935 72935 6 LEVQATDREENKQIALGTSK Unmodified 2229.1601 0.16008906 624 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 0 2 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 44.741 44.885 4 6.7055E-09 11487 20211116_3444_TMUAki_TMT10x_S_F5 112.54 97.122 2045500 4268700 90945 3251400 5243000 8331200 3618100 10519000 7476200 7707800 5690400 1905300 3979400 299130 3464800 4991900 8223100 3874400 10501000 7373500 7643700 5544600 2 2 2 2 2 2 2 2 2 2 2 1099400 2095900 50232 1660300 3322700 5944900 2515800 5153100 3868800 3779000 2961600 1024100 1954100 169100 1788600 3168700 5774200 2635900 5238200 3844500 3747300 2885000 1 1 1 1 1 1 1 1 1 1 1 946080 2172800 40713 1591100 1920300 2386300 1102300 5366000 3607300 3928900 2728900 881190 2025300 130020 1676100 1823200 2448900 1238500 5262400 3529100 3896400 2659600 1 1 1 1 1 1 1 1 1 1 1 629760000 208320000 421440000 11296 624 10478 60016;60017;60018 72936;72937 72937 2 LEVSMVKPTPGLTPR Oxidation (M) 1639.8967 0.89672749 1910 Q53HL2 CDCA8 Borealin yes yes 0 0 1 1 By MS/MS By MS/MS 1 0 2 1 1 47.795 47.674 3 0.011337 13051 20211116_3428_TMUAki_TMT10x_P_F1 57.973 24.564 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11297 1910 10479 60019;60020 72938;72939 72938 2506 2 LEVSMVKPTPGLTPR Unmodified 1623.9018 0.90181287 1910 Q53HL2 CDCA8 Borealin yes yes 0 0 0 1 By MS/MS 2 0 1 1 54.98 54.774 3 0.00026084 16261 20211116_3440_TMUAki_TMT10x_S_F2 75.445 59.906 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11298 1910 10479 60021 72940 72940 1 LEYCEALAMLR Unmodified 1367.6577 0.65774277 678 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 75.043 75.012 2 4.6677E-08 24153 20211116_3445_TMUAki_TMT10x_S_F6 147.95 101.06 9918900 17189000 30617 15624000 11773000 12008000 11613000 7021100 6674400 8138600 11109000 9235100 16033000 803310 15996000 11281000 12344000 11635000 7423700 7163500 7902600 10579000 3 3 1 3 3 3 3 3 3 3 3 3322400 5723000 0 4886500 3628700 5275900 3936600 2157800 1809200 2492200 3565300 3093300 5337000 263130 5050000 3486000 5280700 3911100 2361300 1995900 2420200 3385000 1 1 0 1 1 1 1 1 1 1 1 6596500 11466000 30617 10738000 8143900 6732400 7676100 4863300 4865300 5646400 7543400 6141700 10696000 540170 10946000 7795100 7063600 7723700 5062400 5167600 5482300 7193900 2 2 1 2 2 2 2 2 2 2 2 1249800000 417950000 831870000 11299 678 10480 60022;60023;60024;60025 72941;72942;72943;72944 72944 4 LFADAEEEQRR Unmodified 1362.6528 0.65279205 1048 P46459;P46459-2 NSF Vesicle-fusing ATPase yes no 0 0 0 1 By MS/MS 2 0 1 1 35.963 36.062 3 4.8918E-06 8595 20211116_3440_TMUAki_TMT10x_S_F2 118.28 96.08 271500 423810 6148.7 493300 257730 216030 331750 219350 329850 249830 301410 252840 395720 28047 494190 249360 237260 332580 223770 334640 242740 291640 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 271500 423810 6148.7 493300 257730 216030 331750 219350 329850 249830 301410 252840 395720 28047 494190 249360 237260 332580 223770 334640 242740 291640 1 1 1 1 1 1 1 1 1 1 1 17052000 0 17052000 11300 1048 10481 60026 72945 72945 1 LFADAVQELLPQYK Unmodified 1633.8716 0.87155859 913 P33993;P33993-2 MCM7 DNA replication licensing factor MCM7 yes no 0 0 0 0 By MS/MS By MS/MS 6.31 2.37 2 2 4 5 6 7 80.702 80.712 2;3 4.1129E-37 26677 20211116_3436_TMUAki_TMT10x_P_F8 245.08 154.93 96203000 155460000 1304700 147460000 90744000 133850000 102970000 70889000 69043000 82056000 102900000 89584000 145030000 9060500 150790000 87393000 135780000 102760000 75587000 72926000 79680000 98216000 11 11 10 11 11 11 11 11 11 11 11 62842000 103090000 1035100 93963000 51348000 98740000 62954000 47237000 45905000 55164000 66172000 58519000 96156000 6013700 96573000 49589000 99138000 62722000 50864000 48166000 53549000 63207000 6 6 6 6 6 6 6 6 6 6 6 33362000 52378000 269560 53497000 39397000 35109000 40015000 23652000 23138000 26893000 36728000 31065000 48878000 3046700 54221000 37804000 36644000 40034000 24723000 24760000 26131000 35009000 5 5 4 5 5 5 5 5 5 5 5 14805000000 7868800000 6936500000 11301 913 10482 60027;60028;60029;60030;60031;60032;60033;60034;60035;60036;60037;60038;60039 72946;72947;72948;72949;72950;72951;72952;72953;72954;72955;72956;72957;72958 72951 13 LFAELEIK Unmodified 961.54843 0.54843354 370 O75937 DNAJC8 DnaJ homolog subfamily C member 8 yes yes 0 0 0 0 By MS/MS By matching 4.5 0.5 1 1 1 1 74.205 74.229 2 0.018659 24359 20211116_3431_TMUAki_TMT10x_P_F4 73.665 47.771 3094500 5104200 132090 4574300 3708400 7030300 4145100 3972500 3371200 3864400 4229500 2882300 4760800 388250 4740700 3574700 6941800 4157800 4190100 3493900 3778600 4053400 1 1 1 1 1 1 1 1 1 1 1 3094500 5104200 132090 4574300 3708400 7030300 4145100 3972500 3371200 3864400 4229500 2882300 4760800 388250 4740700 3574700 6941800 4157800 4190100 3493900 3778600 4053400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 383670000 215880000 167780000 11302 370 10483 60040;60041 72959 72959 1 LFCIPVHGIR Unmodified 1210.6645 0.66448313 849 P29218;P29218-3 IMPA1 Inositol monophosphatase 1 yes no 0 0 0 0 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 56.722 56.728 3 2.1328E-05 17616 20211116_3442_TMUAki_TMT10x_S_F4 131.22 107.43 1174100 1855900 6264.7 1938300 1698200 2001000 1300000 1579200 1293800 1394500 1618900 1093300 1732100 110520 1972500 1618700 2025200 1339300 1621400 1328000 1369600 1551600 2 2 2 2 2 2 2 2 2 2 2 675730 1008100 585.12 1045500 1130300 1580100 880440 892640 790260 775340 888200 629180 940770 62935 1071900 1077600 1561300 903340 938760 811380 762070 853790 1 1 1 1 1 1 1 1 1 1 1 498400 847870 5679.6 892850 567870 420890 419560 686610 503530 619180 730710 464100 791320 47587 900620 541120 463860 435930 682670 516640 607500 697860 1 1 1 1 1 1 1 1 1 1 1 885720000 461620000 424100000 11303 849 10484 60042;60043;60044;60045 72960;72961 72961 2 LFCVGFTK Unmodified 970.49462 0.49462383 1305 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 0 0 By MS/MS By MS/MS 3.23 1.76 2 2 5 2 1 1 9 4 65.689 65.53 2 0.0004193 21615 20211116_3431_TMUAki_TMT10x_P_F4 143.94 109.14 207290000 326960000 1168600 360030000 259940000 306890000 227610000 204720000 131090000 189730000 228660000 193000000 305210000 17210000 364160000 248380000 313620000 229580000 212850000 141050000 185920000 217560000 16 16 7 16 16 16 16 16 16 16 16 131510000 201330000 41664 218850000 180700000 246140000 159830000 127320000 79041000 116020000 139230000 122440000 187930000 10571000 222430000 172670000 246400000 160720000 135110000 86082000 113780000 132450000 10 10 4 10 10 10 10 10 10 10 10 75783000 125630000 1127000 141180000 79238000 60748000 67781000 77396000 52048000 73710000 89433000 70564000 117290000 6639600 141720000 75709000 67222000 68865000 77740000 54965000 72140000 85115000 6 6 3 6 6 6 6 6 6 6 6 20571000000 11023000000 9548200000 11304 1305 10485 60046;60047;60048;60049;60050;60051;60052;60053;60054;60055;60056;60057;60058 72962;72963;72964;72965;72966;72967;72968;72969;72970;72971;72972;72973;72974;72975;72976;72977;72978;72979;72980 72972 19 LFCVGFTKK Unmodified 1098.5896 0.58958685 1305 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 0 1 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 57.727 57.783 3 0.00014339 17751 20211116_3433_TMUAki_TMT10x_P_F5 90.15 59.819 12159000 20896000 43401 24362000 13437000 7448700 8862400 10467000 9012700 10423000 14467000 11322000 19511000 1066400 24355000 12772000 8699400 9233400 10489000 9355800 10181000 13787000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12159000 20896000 43401 24362000 13437000 7448700 8862400 10467000 9012700 10423000 14467000 11322000 19511000 1066400 24355000 12772000 8699400 9233400 10489000 9355800 10181000 13787000 2 2 2 2 2 2 2 2 2 2 2 273350000 0 273350000 11305 1305 10486 60059;60060;60061 72981;72982;72983;72984 72981 4 LFCVHTK Unmodified 903.46366 0.46365805 1995 Q6P2E9;Q6P2E9-2 EDC4 Enhancer of mRNA-decapping protein 4 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 40.568 40.64 3 0.0044444 11885 20211116_3429_TMUAki_TMT10x_P_F2 92.187 56.83 637260 1007900 0 1109900 655470 561070 612030 760790 757180 719680 871220 593340 940900 52004 1116900 627330 609930 627570 762210 767990 704570 836900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 637260 1007900 0 1109900 655470 561070 612030 760790 757180 719680 871220 593340 940900 52004 1116900 627330 609930 627570 762210 767990 704570 836900 1 1 0 1 1 1 1 1 1 1 1 21580000 0 21580000 11306 1995 10487 60062;60063 72985;72986 72985 2 LFDANKAELFTQSCADLDK Unmodified 2185.0361 0.036134095 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS 7 0 1 1 72.842 73.121 3 4.1748E-06 24902 20211116_3435_TMUAki_TMT10x_P_F7 90.22 80.937 5199000 8612100 45351 8930100 5611400 10111000 5941400 4485000 4608800 5274100 6475300 4841100 8037200 479070 9105400 5391500 10101000 5968100 4867600 4813200 5118500 6188700 1 1 1 1 1 1 1 1 1 1 1 5199000 8612100 45351 8930100 5611400 10111000 5941400 4485000 4608800 5274100 6475300 4841100 8037200 479070 9105400 5391500 10101000 5968100 4867600 4813200 5118500 6188700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 721500000 721500000 0 11307 1475 10488 60064 72987 72987 1 LFDFPGR Unmodified 850.43374 0.43373813 3056 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 62.398 62.625 2 0.0019812 19178 20211116_3436_TMUAki_TMT10x_P_F8 154.35 108.4 30700000 48539000 514900 49727000 40572000 48774000 35432000 39806000 35071000 37893000 40385000 28588000 45296000 3104100 50632000 38800000 49545000 36198000 40867000 35883000 37087000 38794000 6 6 3 6 6 6 6 6 6 6 6 15218000 22968000 219960 23418000 21868000 33350000 19403000 19630000 17420000 18937000 19540000 14170000 21434000 1527000 24007000 20917000 33053000 19749000 20630000 17884000 18523000 18784000 3 3 1 3 3 3 3 3 3 3 3 15483000 25571000 294940 26309000 18704000 15424000 16028000 20176000 17652000 18956000 20845000 14418000 23863000 1577200 26625000 17883000 16491000 16448000 20237000 18000000 18564000 20009000 3 3 2 3 3 3 3 3 3 3 3 5873900000 2904900000 2969000000 11308 3056 10489 60065;60066;60067;60068;60069;60070 72988;72989;72990;72991;72992;72993 72990 6 LFDFVNAK Unmodified 952.50182 0.5018177 1550 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.75 2.82 2 1 2 3 5 3 71.703 71.767 2;3 0.00041809 22868 20211116_3428_TMUAki_TMT10x_P_F1 143.61 90.258 104610000 166400000 2382300 177790000 138370000 170490000 113160000 135170000 138880000 131890000 144460000 97423000 155310000 11285000 180460000 132180000 173340000 116900000 139120000 140360000 128950000 139180000 8 8 6 8 8 8 8 8 8 8 8 55874000 87069000 885680 91064000 84028000 122100000 64676000 69266000 70693000 67642000 72764000 52031000 81260000 5833400 93082000 80136000 121280000 66801000 73043000 71728000 66129000 70129000 4 4 3 4 4 4 4 4 4 4 4 48740000 79334000 1496600 86722000 54341000 48395000 48482000 65908000 68185000 64253000 71696000 45392000 74054000 5451500 87376000 52044000 52059000 50094000 66077000 68629000 62821000 69054000 4 4 3 4 4 4 4 4 4 4 4 8065000000 4600700000 3464300000 11309 1550 10490 60071;60072;60073;60074;60075;60076;60077;60078 72994;72995;72996;72997;72998;72999;73000;73001;73002;73003 72994 10 LFDHPESPTPNPTEPLFLAQAEVYK Unmodified 2839.4069 0.40686127 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 5.1 0.943 3 4 2 1 4 6 77.736 77.74 3;4 1.4063E-29 25771 20211116_3431_TMUAki_TMT10x_P_F4 168.75 147.14 48168000 81073000 323130 73895000 50064000 66250000 52522000 44051000 43268000 48096000 55772000 44849000 75623000 3586200 75778000 48059000 67463000 52860000 46029000 44866000 46806000 53414000 13 13 5 13 13 13 13 13 13 13 13 22916000 38480000 112090 34612000 21065000 40064000 23819000 20377000 21346000 23704000 27184000 21336000 35891000 1402200 35665000 20258000 40035000 23940000 21811000 22031000 23013000 26043000 6 6 2 6 6 6 6 6 6 6 6 25252000 42593000 211050 39283000 28999000 26186000 28702000 23674000 21922000 24392000 28588000 23512000 39732000 2184000 40113000 27801000 27428000 28920000 24218000 22835000 23793000 27371000 7 7 3 7 7 7 7 7 7 7 7 16526000000 7815900000 8710500000 11310 1092 10491 60079;60080;60081;60082;60083;60084;60085;60086;60087;60088 73004;73005;73006;73007;73008;73009;73010;73011;73012;73013;73014;73015;73016 73004 13 LFDIFSQQVATVIQSR Unmodified 1850.989 0.98904797 2541 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 0.745 1 2 3 2 4 81.536 81.534 2;3 6.1408E-30 26437 20211116_3444_TMUAki_TMT10x_S_F5 197.47 158.47 4693300 7361200 61013 7935300 4917200 7236600 5640200 4010900 4424100 4600800 5600400 4370300 6870900 436600 8044300 4735900 7342700 5645600 4258400 4595700 4469100 5366100 4 4 3 4 4 4 4 4 4 4 4 2855600 4586400 29332 4726900 2806600 5206900 3280900 2596100 2751100 2798100 3351300 2659000 4280100 250900 4819500 2704000 5216200 3286700 2777300 2843200 2724500 3214300 2 2 1 2 2 2 2 2 2 2 2 1837600 2774800 31680 3208400 2110600 2029600 2359300 1414800 1673000 1802700 2249200 1711300 2590800 185700 3224900 2031900 2126500 2358900 1481100 1752500 1744600 2151900 2 2 2 2 2 2 2 2 2 2 2 1672400000 839010000 833360000 11311 2541 10492 60089;60090;60091;60092;60093;60094 73017;73018;73019;73020;73021 73020 5 LFDPINLVFPPGGR Unmodified 1540.8402 0.84019889 3205 Q9UP83;Q9UP83-2;Q9UP83-3 COG5 Conserved oligomeric Golgi complex subunit 5 yes no 0 0 0 0 By MS/MS By MS/MS 3.6 0.49 2 3 3 2 80.968 80.944 2;3 4.3074E-23 27484 20211116_3442_TMUAki_TMT10x_S_F4 183.33 130.85 3433600 5465600 846.79 5249300 3861800 5227700 4511400 3342100 3083200 3761000 4410500 3196900 5099200 275110 5370100 3718200 5284600 4498000 3505700 3246200 3655900 4213500 2 2 1 2 2 2 2 2 2 2 2 1928400 2903000 0 2638600 1729500 3087400 1920100 1774500 1661900 1913600 2229700 1795400 2707800 140740 2717200 1662000 3088100 1929700 1874600 1722200 1863200 2133400 1 1 0 1 1 1 1 1 1 1 1 1505300 2562600 846.79 2610700 2132400 2140300 2591300 1567600 1421200 1847400 2180800 1401500 2391400 134370 2652900 2056200 2196500 2568300 1631100 1524000 1792700 2080200 1 1 1 1 1 1 1 1 1 1 1 850620000 536780000 313840000 11312 3205 10493 60095;60096;60097;60098;60099 73022;73023;73024;73025 73025 4 LFDQAFGLPR Unmodified 1162.6135 0.61349341 492 P04792 HSPB1 Heat shock protein beta-1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.43 2.87 2 1 2 2 3 4 72.488 72.541 2 2.5739E-08 23163 20211116_3428_TMUAki_TMT10x_P_F1 166.77 116.64 52822000 87100000 108550 83913000 57391000 79773000 60487000 48344000 46055000 49459000 64750000 49182000 81262000 4416500 85768000 55106000 80816000 60746000 50772000 48148000 48258000 61883000 7 7 3 7 7 7 7 7 7 7 7 33485000 53775000 80161 52127000 31987000 54992000 35806000 29981000 28169000 30747000 39980000 31178000 50171000 2760800 53337000 30767000 55284000 35883000 31767000 29410000 29997000 38201000 4 4 1 4 4 4 4 4 4 4 4 19337000 33326000 28390 31786000 25405000 24780000 24682000 18363000 17887000 18712000 24771000 18004000 31091000 1655700 32431000 24339000 25533000 24863000 19005000 18738000 18260000 23682000 3 3 2 3 3 3 3 3 3 3 3 6533800000 3710600000 2823200000 11313 492 10494 60100;60101;60102;60103;60104;60105;60106 73026;73027;73028;73029;73030;73031;73032;73033 73027 8 LFDRGDFYTAHGEDALLAAR Unmodified 2237.0865 0.086530182 1027 P43246 MSH2 DNA mismatch repair protein Msh2 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 60.184 60.242 4 2.602E-24 18061 20211116_3445_TMUAki_TMT10x_S_F6 167.16 149.67 42998000 74368000 227810 74911000 57664000 71068000 50179000 54742000 54243000 54072000 59745000 40033000 69396000 3491100 76326000 55085000 72270000 51416000 56462000 55200000 52837000 57464000 10 10 5 10 10 10 10 10 10 10 10 22538000 36299000 69544 37595000 31975000 49421000 29475000 27398000 26759000 27003000 28661000 20984000 33876000 1831800 38438000 30585000 49123000 29944000 28956000 27409000 26388000 27590000 5 5 2 5 5 5 5 5 5 5 5 20460000 38069000 158270 37316000 25689000 21647000 20704000 27344000 27484000 27069000 31084000 19049000 35520000 1659300 37887000 24499000 23147000 21472000 27506000 27791000 26449000 29874000 5 5 3 5 5 5 5 5 5 5 5 6090200000 3065000000 3025100000 11314 1027 10495 60107;60108;60109;60110;60111;60112 73034;73035;73036;73037;73038;73039;73040;73041;73042;73043 73042 10 LFDSTTLEHQK Unmodified 1317.6565 0.65648044 1623 Q13347 EIF3I Eukaryotic translation initiation factor 3 subunit I yes yes 0 0 0 0 By MS/MS 5 0 1 1 47.514 47.687 3 7.8015E-12 12589 20211116_3444_TMUAki_TMT10x_S_F5 135.8 110.32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11315 1623 10496 60113 73044 73044 1 LFDVCTVSR Unmodified 1095.5383 0.53827956 1469 Q00534 CDK6 Cyclin-dependent kinase 6 yes yes 0 0 0 0 By MS/MS 6 0 1 1 54.86 54.95 2 3.1052E-05 15846 20211116_3445_TMUAki_TMT10x_S_F6 110.55 73.792 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11316 1469 10497 60114 73045 73045 1 LFDYFPK Unmodified 928.46945 0.46945494 558 P08574 CYC1 Cytochrome c1, heme protein, mitochondrial yes yes 0 0 0 0 By MS/MS 8 0 2 2 73.797 73.639 2 0.051211 23254 20211116_3447_TMUAki_TMT10x_S_F8 66.258 33.137 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11317 558 10498 60115;60116 73046;73047 73046 2 LFDYFPKPYPNSEAAR Unmodified 1913.9312 0.93119874 558 P08574 CYC1 Cytochrome c1, heme protein, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 3 2.92 2 1 1 1 3 67.314 67.186 3 7.3615E-15 23072 20211116_3439_TMUAki_TMT10x_S_F1 141.6 122.53 38535000 74048000 379640 55457000 59809000 61534000 46580000 54836000 41933000 53347000 54955000 35881000 69026000 3680400 57979000 57027000 62161000 47796000 56047000 43325000 52163000 52610000 8 8 5 8 8 8 8 8 8 8 8 10219000 19174000 188060 14399000 14033000 26022000 15527000 14492000 11212000 14307000 14487000 9516000 17874000 1075900 15201000 13504000 25534000 15538000 15310000 11712000 13980000 13873000 2 2 2 2 2 2 2 2 2 2 2 28316000 54874000 191580 41058000 45777000 35511000 31053000 40344000 30721000 39040000 40468000 26365000 51152000 2604500 42778000 43523000 36627000 32258000 40736000 31613000 38182000 38737000 6 6 3 6 6 6 6 6 6 6 6 3586200000 1326700000 2259500000 11318 558 10499 60117;60118;60119;60120 73048;73049;73050;73051;73052;73053;73054;73055 73051 8 LFEAEEQDLFK Unmodified 1367.6609 0.66089712 2809 Q9H4M9 EHD1 EH domain-containing protein 1 yes yes 0 0 0 0 By MS/MS 1 0 1 1 76.09 76.026 2 8.7847E-15 26602 20211116_3439_TMUAki_TMT10x_S_F1 166.97 110.41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11319 2809 10500 60121 73056 73056 1 LFEAVEEGR Unmodified 1048.5189 0.51892433 212 O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 53.335 53.244 2 0.012117 15642 20211116_3440_TMUAki_TMT10x_S_F2 66.299 41.964 8981000 14349000 405600 14900000 14821000 16559000 10818000 16210000 14763000 13150000 14510000 8365300 13391000 1204400 15186000 14135000 16759000 11305000 16407000 14837000 12969000 14005000 2 2 2 2 2 2 2 2 2 2 2 4803000 7094200 234960 7236000 10103000 12322000 6847900 8362700 7629900 6650300 7600000 4473900 6620200 691420 7447900 9620000 12151000 7140600 8651200 7726900 6565500 7332300 1 1 1 1 1 1 1 1 1 1 1 4178000 7254800 170640 7664100 4717700 4236800 3970600 7847400 7133200 6499900 6910100 3891400 6771100 512970 7738500 4515100 4608700 4164500 7756200 7110400 6403600 6672800 1 1 1 1 1 1 1 1 1 1 1 206500000 118020000 88481000 11320 212 10501 60122;60123;60124 73057;73058;73059 73059 3 LFECDRDQMYYNLLK Oxidation (M) 2022.9179 0.91793321 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 1 1 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 67.126 67.22 3 0.0001025 20521 20211116_3434_TMUAki_TMT10x_P_F6 87.18 75.264 15371000 25093000 81877 26763000 14147000 18203000 15551000 13089000 12720000 12797000 18023000 14312000 23421000 1287900 27056000 13602000 18957000 15613000 13558000 13253000 12511000 17222000 3 3 1 3 3 3 3 3 3 3 3 3879200 6756900 0 6986800 3590300 5704000 3397800 3349200 3087200 3276000 4725000 3611700 6305700 289880 7092300 3435900 5837100 3447000 3521900 3212400 3202500 4507300 1 1 0 1 1 1 1 1 1 1 1 11492000 18336000 81877 19776000 10557000 12499000 12153000 9740100 9633300 9521500 13298000 10701000 17115000 998010 19964000 10166000 13120000 12166000 10036000 10040000 9308200 12715000 2 2 1 2 2 2 2 2 2 2 2 1718600000 373550000 1345100000 11321 1018 10502 60125;60126;60127 73060;73061;73062 73060 1312 3 LFEELGK Unmodified 834.44872 0.4487195 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 0 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 62.565 62.431 2 0.0065884 19448 20211116_3431_TMUAki_TMT10x_P_F4 102.72 41.931 56964000 89606000 643380 100730000 69766000 73103000 62191000 64529000 67537000 64842000 74129000 53041000 83654000 5210600 101570000 66725000 75984000 63645000 66051000 68707000 63315000 71305000 7 7 5 7 7 7 7 7 7 7 7 18247000 27693000 0 31462000 33663000 37216000 22916000 20586000 21976000 20353000 22532000 16987000 25855000 1437700 31916000 31989000 37185000 23778000 21763000 22418000 19887000 21719000 2 2 0 2 2 2 2 2 2 2 2 38717000 61913000 643380 69271000 36103000 35887000 39275000 43943000 45561000 44489000 51596000 36054000 57799000 3772900 69649000 34736000 38800000 39867000 44288000 46290000 43428000 49586000 5 5 5 5 5 5 5 5 5 5 5 1528200000 612800000 915350000 11322 916 10503 60128;60129;60130;60131;60132 73063;73064;73065;73066;73067;73068;73069 73064 7 LFEELVR Unmodified 904.50182 0.5018177 671 P14618-2 PKM Pyruvate kinase PKM yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 1.11 1 2 1 2 3 3 64.375 64.235 2 0.0030215 22978 20211116_3441_TMUAki_TMT10x_S_F3 120.52 43.026 24904000 38937000 38529 42828000 27781000 28921000 24755000 28858000 28267000 28386000 32551000 23187000 36347000 2032200 43209000 26557000 30320000 25377000 29330000 28755000 27742000 31268000 6 6 3 6 6 6 6 6 6 6 6 6723500 9643100 20773 10702000 9624100 12928000 8183700 7520500 7305100 7206000 8421300 6260400 9002000 617410 10877000 9193100 12911000 8349200 7909900 7509700 7050700 8089200 2 2 2 2 2 2 2 2 2 2 2 18180000 29294000 17757 32126000 18157000 15993000 16571000 21337000 20962000 21180000 24129000 16927000 27345000 1414800 32332000 17364000 17408000 17028000 21420000 21245000 20692000 23179000 4 4 1 4 4 4 4 4 4 4 4 1662300000 660520000 1001800000 11323 671 10504 60133;60134;60135;60136;60137;60138 73070;73071;73072;73073;73074;73075;73076 73073 7 LFEEPEDPSNR Unmodified 1331.5994 0.59935949 1397 P63151;P63151-2;Q9Y2T4;Q9Y2T4-3;Q9Y2T4-4;Q9Y2T4-2 PPP2R2A;PPP2R2C Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform yes no 0 0 0 0 By MS/MS 2 0 1 1 47.636 47.35 2 2.2841E-07 14529 20211116_3429_TMUAki_TMT10x_P_F2 118.21 97.509 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11324 1397 10505 60139 73077 73077 1 LFEGNALLR Unmodified 1031.5764 0.57637963 1054 P46781 RPS9 40S ribosomal protein S9 yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 1.12 2 2 2 2 4 4 60.775 60.991 2 4.8265E-06 17946 20211116_3434_TMUAki_TMT10x_P_F6 185.05 105.58 90103000 149090000 146520 146760000 113690000 141700000 97691000 107880000 102650000 102550000 113710000 83891000 139110000 7339800 149810000 108580000 143910000 100080000 111230000 104610000 100370000 109350000 9 9 3 9 9 9 9 9 9 9 9 49030000 79939000 34764 79686000 73422000 105920000 61925000 59535000 55557000 56483000 62019000 45648000 74591000 3994000 81703000 70084000 105240000 63217000 62781000 57028000 55290000 59628000 5 5 1 5 5 5 5 5 5 5 5 41073000 69149000 111750 67075000 40272000 35783000 35765000 48346000 47097000 46066000 51690000 38242000 64515000 3345700 68106000 38498000 38666000 36865000 48453000 47580000 45084000 49721000 4 4 2 4 4 4 4 4 4 4 4 16453000000 8336100000 8116500000 11325 1054 10506 60140;60141;60142;60143;60144;60145;60146;60147 73078;73079;73080;73081;73082;73083;73084;73085;73086 73080 9 LFEGNALLRR Unmodified 1187.6775 0.67749065 1054 P46781 RPS9 40S ribosomal protein S9 yes yes 0 0 0 1 By MS/MS By MS/MS 2.25 0.829 1 1 2 3 1 49.019 48.795 3 8.0616E-08 13531 20211116_3428_TMUAki_TMT10x_P_F1 119.27 77.165 8013200 12660000 2196.5 14727000 13423000 14698000 8943800 10778000 11622000 8961900 10901000 7460700 11821000 687660 14877000 12754000 14887000 9389200 11102000 11681000 8827500 10538000 3 3 1 3 3 3 3 3 3 3 3 5827300 9137100 0 10623000 10898000 13091000 7212400 7679900 8461100 6708700 8215600 5425300 8531500 499630 10769000 10353000 13062000 7547200 8052400 8544400 6592000 7932900 2 2 0 2 2 2 2 2 2 2 2 2185900 3522900 2196.5 4104000 2524900 1607000 1731500 3098400 3161000 2253200 2685100 2035300 3289400 188020 4108400 2401200 1824600 1842100 3049700 3136300 2235400 2604900 1 1 1 1 1 1 1 1 1 1 1 1193700000 805700000 388030000 11326 1054 10507 60148;60149;60150;60151 73087;73088;73089;73090 73087 4 LFEHYYQELK Unmodified 1368.6714 0.67140222 1552 Q08J23;Q08J23-2 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 6.29 1.03 2 2 2 1 3 4 59.38 59.61 3 2.1807E-05 17826 20211116_3445_TMUAki_TMT10x_S_F6 130.98 106.73 30714000 50703000 175700 48683000 41763000 56983000 37515000 41204000 39095000 37034000 39464000 28598000 47304000 2704500 49931000 39938000 57184000 38324000 42565000 39716000 36341000 38058000 6 6 3 6 6 6 6 6 6 6 6 17769000 30589000 151600 29444000 28020000 44050000 25588000 24769000 22989000 22506000 22557000 16544000 28538000 1636900 30337000 26807000 43541000 26001000 26089000 23486000 22074000 21773000 4 4 2 4 4 4 4 4 4 4 4 12946000 20114000 24101 19238000 13744000 12933000 11928000 16435000 16106000 14528000 16907000 12054000 18765000 1067600 19594000 13131000 13643000 12323000 16476000 16230000 14268000 16285000 2 2 1 2 2 2 2 2 2 2 2 3049800000 1397800000 1652000000 11327 1552 10508 60152;60153;60154;60155;60156;60157;60158 73091;73092;73093;73094;73095 73095 5 LFEISDIVIK Unmodified 1175.6802 0.680176 2941 Q9NSD9;Q9NSD9-2 FARSB Phenylalanine--tRNA ligase beta subunit yes no 0 0 0 0 By MS/MS By MS/MS 6.4 0.49 3 2 3 2 79.159 79.186 2 1.8283E-09 27924 20211116_3446_TMUAki_TMT10x_S_F7 183.47 129.06 13333000 22055000 190240 22678000 15074000 16198000 16883000 11087000 10746000 12885000 15684000 12416000 20582000 1307100 22995000 14510000 16786000 16841000 11584000 11376000 12510000 14977000 2 2 2 2 2 2 2 2 2 2 2 5415200 8106900 117750 8314500 5189800 8554600 6380700 4456600 4182700 5102300 6081200 5043000 7565400 555540 8471100 5013300 8607900 6341900 4757300 4418700 4956500 5807600 1 1 1 1 1 1 1 1 1 1 1 7918200 13948000 72500 14364000 9884000 7643300 10502000 6630300 6563600 7783100 9602900 7373200 13017000 751580 14523000 9497200 8178300 10499000 6826900 6957500 7553900 9169500 1 1 1 1 1 1 1 1 1 1 1 2023100000 834590000 1188500000 11328 2941 10509 60159;60160;60161;60162;60163 73096;73097;73098;73099 73099 4 LFELLEK Unmodified 890.51132 0.51131975 260;844 P28370-2;P28370;O60264 SMARCA1;SMARCA5 Probable global transcription activator SNF2L1;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 no no 0 0 0 0 By MS/MS By MS/MS 6.33 0.943 1 2 2 1 77.616 77.684 2 0.0037232 26874 20211116_3435_TMUAki_TMT10x_P_F7 117.02 0 13800000 23280000 310050 20988000 13949000 21361000 17402000 14190000 16204000 15704000 17254000 12852000 21714000 1435200 21579000 13481000 21577000 17434000 14834000 16574000 15275000 16612000 2 2 2 2 2 2 2 2 2 2 2 6772700 10914000 127000 9779800 7270500 12642000 8585100 7247500 7725800 7217300 8397500 6307000 10179000 686830 10100000 7012100 12581000 8612900 7640100 7921100 7050000 8080000 1 1 1 1 1 1 1 1 1 1 1 7027500 12366000 183050 11209000 6678400 8718700 8816900 6942300 8478100 8486700 8856500 6544600 11535000 748340 11479000 6468500 8995700 8821000 7194400 8653200 8224900 8531800 1 1 1 1 1 1 1 1 1 1 1 843710000 289900000 553810000 11329 844;260 10510 60164;60165;60166 73100;73101;73102 73101 3 LFEMAYKK Oxidation (M) 1044.5314 0.53140327 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 1 1 By MS/MS By MS/MS 8 0 2 1 1 46.907 47.026 3 0.039852 12868 20211116_3436_TMUAki_TMT10x_P_F8 47.082 26.752 1745200 2589600 39045 2621700 4499600 4744900 2538500 3096500 3249100 2431700 2706600 1625300 2416500 219660 2704100 4267500 4665800 2699400 3211600 3255000 2402300 2627800 1 1 1 1 1 1 1 1 1 1 1 1745200 2589600 39045 2621700 4499600 4744900 2538500 3096500 3249100 2431700 2706600 1625300 2416500 219660 2704100 4267500 4665800 2699400 3211600 3255000 2402300 2627800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 92633000 92633000 0 11330 972 10511 60167;60168 73103;73104 73103 1236 2 LFEMVLGPAAYNVPLPK Oxidation (M) 1874.0012 0.001192559 1872 Q16891;Q16891-2;Q16891-4;Q16891-3 IMMT MICOS complex subunit MIC60 yes no 0 0 1 0 By MS/MS By matching 2.25 0.433 3 1 2 2 79.54 79.513 2;3 1.0724E-07 27521 20211116_3429_TMUAki_TMT10x_P_F2 107.07 87.235 5113100 7914600 0 7481200 4040200 8271200 5393000 4397000 4122800 4770700 5947200 4759600 7383500 265740 7674500 3898600 8290300 5360300 4677300 4314500 4643900 5680600 2 2 0 2 2 2 2 2 2 2 2 5113100 7914600 0 7481200 4040200 8271200 5393000 4397000 4122800 4770700 5947200 4759600 7383500 265740 7674500 3898600 8290300 5360300 4677300 4314500 4643900 5680600 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2420400000 1521000000 899310000 11331 1872 10512 60169;60170;60171;60172 73105;73106 73105 2488 2 LFEMVLGPAAYNVPLPK Unmodified 1858.0063 0.0062779369 1872 Q16891;Q16891-2;Q16891-4;Q16891-3 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 81.147 81.124 3 1.704E-08 28698 20211116_3430_TMUAki_TMT10x_P_F3 119.31 105.65 10738000 16148000 19430 16316000 9518900 11944000 11148000 5176100 4935100 6612700 10257000 9997700 15068000 762120 16568000 9160900 12286000 11030000 5647300 5481400 6399100 9730000 5 5 1 5 5 5 5 5 5 5 5 9487600 14286000 19430 14408000 8097100 10676000 9608900 4462000 4167900 5807500 8859900 8833100 13331000 664390 14634000 7795200 10967000 9499200 4890500 4644700 5616500 8401600 4 4 1 4 4 4 4 4 4 4 4 1250900 1861400 0 1907800 1421800 1268100 1539200 714170 767240 805150 1397300 1164600 1737100 97726 1933500 1365700 1318900 1531200 756790 836670 782610 1328400 1 1 0 1 1 1 1 1 1 1 1 1818200000 933600000 884630000 11332 1872 10512 60173;60174;60175 73107;73108;73109;73110;73111 73107 5 LFEQNVQR Unmodified 1032.5352 0.53524309 1292 P61081 UBE2M NEDD8-conjugating enzyme Ubc12 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 39.09 39.202 2 0.032213 11458 20211116_3430_TMUAki_TMT10x_P_F3 62.582 41.282 3218600 5209500 4042.8 5314300 3493400 3052200 4415100 2082100 2326600 2265400 3691600 2996600 4861400 245660 5380200 3371200 3227100 4365600 2171400 2506700 2204900 3518900 3 3 1 3 3 3 3 3 3 3 3 454010 703810 4042.8 781770 968470 755870 515140 379260 471520 391090 585780 422730 657020 45082 791640 917230 763160 544880 404970 485650 381470 561540 2 2 1 2 2 2 2 2 2 2 2 2764600 4505700 0 4532500 2524900 2296400 3899900 1702900 1855100 1874300 3105800 2573900 4204400 200580 4588600 2453900 2464000 3820700 1766400 2021100 1823500 2957300 1 1 0 1 1 1 1 1 1 1 1 41688000 7626500 34061000 11333 1292 10513 60176;60177 73112;73113 73112 2 LFEVGGSPANTR Unmodified 1246.6306 0.63060004 1545 Q08209;Q08209-2;Q08209-3;P16298;Q08209-5;P16298-2;P16298-3;P16298-4 PPP3CA;PPP3CB Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2B catalytic subunit beta isoform yes no 0 0 0 0 By MS/MS 6 0 1 1 48.601 48.757 2 5.4372E-15 13295 20211116_3445_TMUAki_TMT10x_S_F6 160.61 134.01 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11334 1545 10514 60178 73114 73114 1 LFFAGEHTIR Unmodified 1189.6244 0.62439245 265 O60341;O60341-2 KDM1A Lysine-specific histone demethylase 1A yes no 0 0 0 0 By MS/MS By MS/MS 6.17 2.41 1 1 2 2 4 2 47.835 48.053 3 2.8278E-11 14503 20211116_3435_TMUAki_TMT10x_P_F7 204.34 156.74 23279000 34329000 2312000 41472000 27370000 36842000 25019000 27877000 24946000 24411000 29128000 21692000 32059000 4142000 41734000 26325000 37617000 25499000 28692000 25529000 23983000 27969000 8 8 8 8 8 8 8 8 8 8 8 15137000 21590000 2003600 26668000 18840000 29470000 16701000 17812000 16454000 16017000 18610000 14109000 20164000 3174100 26889000 18132000 29587000 17045000 18645000 16826000 15717000 17886000 5 5 5 5 5 5 5 5 5 5 5 8141500 12739000 308430 14804000 8529900 7372700 8318400 10065000 8491500 8393700 10518000 7582900 11895000 967870 14846000 8192300 8029700 8454200 10047000 8703000 8266600 10083000 3 3 3 3 3 3 3 3 3 3 3 3854500000 2395100000 1459400000 11335 265 10515 60179;60180;60181;60182;60183;60184 73115;73116;73117;73118;73119;73120;73121;73122;73123 73118 9 LFFVGSR Unmodified 824.45447 0.45447358 1484 Q01650;Q92536;Q9UM01 SLC7A5;SLC7A6;SLC7A7 Large neutral amino acids transporter small subunit 1;Y+L amino acid transporter 2;Y+L amino acid transporter 1 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 59.501 59.244 2 0.020848 20963 20211116_3441_TMUAki_TMT10x_S_F3 82.913 50.403 2048900 3222500 9229.1 3350600 3756600 5645900 3263500 2753400 2427200 2651500 2994300 1907800 3007400 202380 3443500 3590100 5545100 3310200 2942400 2526000 2593800 2870900 1 1 1 1 1 1 1 1 1 1 1 2048900 3222500 9229.1 3350600 3756600 5645900 3263500 2753400 2427200 2651500 2994300 1907800 3007400 202380 3443500 3590100 5545100 3310200 2942400 2526000 2593800 2870900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 266460000 266460000 0 11336 1484 10516 60185;60186 73124;73125 73125 2 LFGAAEVQR Unmodified 989.52943 0.52942943 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 3 1 45.615 45.738 2 0.021537 11800 20211116_3444_TMUAki_TMT10x_S_F5 61.691 35.797 9014100 13879000 37550 16424000 14509000 15483000 9655500 10092000 10121000 8941600 12238000 8393200 12960000 857010 16561000 13792000 15710000 10062000 10498000 10351000 8780200 11740000 3 3 2 3 3 3 3 3 3 3 3 6038600 9026200 18398 10785000 12015000 13079000 6992800 6468000 6514300 5757400 8116100 5622600 8429000 599220 10913000 11395000 13034000 7340900 6888600 6704900 5652200 7779700 2 2 1 2 2 2 2 2 2 2 2 2975500 4853200 19152 5639000 2494200 2404200 2662700 3623700 3606900 3184200 4121500 2770600 4531500 257800 5648800 2397000 2676200 2721300 3609600 3646300 3127900 3960000 1 1 1 1 1 1 1 1 1 1 1 407330000 322820000 84512000 11337 1663 10517 60187;60188;60189;60190 73126;73127;73128 73128 3 LFGALLER Unmodified 917.53345 0.53345218 2694 Q9BVI4 NOC4L Nucleolar complex protein 4 homolog yes yes 0 0 0 0 By MS/MS 8 0 1 1 68.789 68.89 2 0.042748 21845 20211116_3436_TMUAki_TMT10x_P_F8 60.358 14.007 4139400 6063000 0 5605600 4116100 7209600 3875100 3537100 3232200 3551700 4195700 3853900 5655700 309130 5774900 3938500 7163200 3923400 3782000 3350600 3468200 4017600 1 1 0 1 1 1 1 1 1 1 1 4139400 6063000 0 5605600 4116100 7209600 3875100 3537100 3232200 3551700 4195700 3853900 5655700 309130 5774900 3938500 7163200 3923400 3782000 3350600 3468200 4017600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 277430000 277430000 0 11338 2694 10518 60191 73129 73129 1 LFGAPEPSTIAR Unmodified 1257.6717 0.67173657 2013 Q6PKG0;Q6PKG0-3 LARP1 La-related protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.6 0.49 2 3 2 3 54.257 54.563 2 4.5449E-22 17716 20211116_3446_TMUAki_TMT10x_S_F7 208.35 152.82 29476000 47879000 114700 50678000 40794000 62656000 35639000 43676000 41565000 38119000 40523000 27444000 44687000 2489400 51681000 38978000 62664000 36603000 45199000 41989000 37458000 39123000 6 6 1 6 6 6 6 6 6 6 6 25596000 41467000 114700 43498000 36398000 58983000 32298000 37802000 35901000 32701000 35150000 23832000 38701000 2232700 44463000 34795000 58657000 33087000 39351000 36339000 32148000 33931000 5 5 1 5 5 5 5 5 5 5 5 3880200 6411500 0 7180500 4395500 3672700 3340900 5874000 5663400 5418200 5373000 3612300 5985500 256730 7218500 4183400 4007300 3515900 5847500 5649600 5310400 5192200 1 1 0 1 1 1 1 1 1 1 1 2301500000 1616700000 684830000 11339 2013 10519 60192;60193;60194;60195;60196 73130;73131;73132;73133;73134;73135;73136;73137 73136 8 LFGGNFAHQASVAR Unmodified 1473.7477 0.74769548 131 O14773;O14773-2 TPP1 Tripeptidyl-peptidase 1 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 44.575 44.24 3 3.8446E-14 13609 20211116_3430_TMUAki_TMT10x_P_F3 135.02 112.79 1463600 2662500 11086 2768100 1516200 1156500 1332300 2421300 2254500 2122300 2328200 1362800 2484800 132410 2792300 1449900 1306000 1389500 2389000 2255800 2085000 2243700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1463600 2662500 11086 2768100 1516200 1156500 1332300 2421300 2254500 2122300 2328200 1362800 2484800 132410 2792300 1449900 1306000 1389500 2389000 2255800 2085000 2243700 2 2 2 2 2 2 2 2 2 2 2 107380000 0 107380000 11340 131 10520 60197;60198 73138;73139;73140 73138 3 LFGLLVK Unmodified 788.51601 0.5160112 1048 P46459;P46459-2 NSF Vesicle-fusing ATPase yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 77.519 77.53 2 0.0063576 25941 20211116_3433_TMUAki_TMT10x_P_F5 106.84 11.887 2811200 4551000 0 4589000 3319200 3297000 3511600 2978200 2953800 3145000 3687300 2617400 4246700 229810 4659500 3186800 3431300 3534700 3049100 3055400 3064700 3534300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2811200 4551000 0 4589000 3319200 3297000 3511600 2978200 2953800 3145000 3687300 2617400 4246700 229810 4659500 3186800 3431300 3534700 3049100 3055400 3064700 3534300 1 1 0 1 1 1 1 1 1 1 1 399510000 0 399510000 11341 1048 10521 60199;60200 73141;73142 73141 2 LFGNILDK Unmodified 918.51747 0.51746776 811 P26358;P26358-2;P26358-3 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 0 0 0 0 By MS/MS By MS/MS 5 3.29 2 1 2 3 2 71.364 71.395 2 0.0020797 22336 20211116_3447_TMUAki_TMT10x_S_F8 113.94 47.855 41159000 65681000 534250 69874000 42698000 53642000 41065000 31885000 34255000 34675000 46755000 38327000 61303000 3926900 70745000 40932000 55159000 41528000 33600000 35590000 33750000 44716000 4 4 3 4 4 4 4 4 4 4 4 23724000 36564000 378580 40475000 25000000 38331000 24475000 16913000 18926000 19347000 26355000 22092000 34132000 2337600 40983000 23981000 38700000 24682000 18350000 19760000 18795000 25194000 2 2 2 2 2 2 2 2 2 2 2 17435000 29118000 155670 29400000 17698000 15311000 16590000 14972000 15329000 15327000 20399000 16235000 27171000 1589400 29762000 16951000 16459000 16847000 15251000 15830000 14955000 19521000 2 2 1 2 2 2 2 2 2 2 2 2077400000 1419600000 657790000 11342 811 10522 60201;60202;60203;60204;60205 73143;73144;73145;73146 73146 4 LFHTAPNVPHYAK Unmodified 1493.7779 0.77793298 1201 P53582 METAP1 Methionine aminopeptidase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 40.963 40.843 4 2.7009E-07 10442 20211116_3440_TMUAki_TMT10x_S_F2 120.55 92.584 3723200 6088600 12486 6882400 5971500 4933300 4245800 4042000 4136800 3777600 5013100 3466800 5684300 350880 6936000 5683100 5125900 4393500 4146700 4244300 3700300 4808800 3 3 2 3 3 3 3 3 3 3 3 1123500 1912600 10049 2246900 3478900 3214200 1745300 1716000 1852000 1528300 1668500 1046200 1785900 135500 2283000 3292700 3181100 1864300 1814700 1872900 1500400 1615200 1 1 1 1 1 1 1 1 1 1 1 2599700 4176000 2436.8 4635500 2492600 1719100 2500400 2326000 2284800 2249300 3344600 2420600 3898400 215380 4652900 2390300 1944800 2529200 2331900 2371500 2199900 3193600 2 2 1 2 2 2 2 2 2 2 2 708810000 460330000 248480000 11343 1201 10523 60206;60207;60208 73147;73148;73149 73149 3 LFIFETFCR Unmodified 1231.606 0.6059652 1272 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E yes yes 0 0 0 0 By MS/MS 4 0 1 1 79.314 79.291 2 0.027365 26824 20211116_3442_TMUAki_TMT10x_S_F4 60.478 31.391 2492200 4394800 125960 4781000 3306500 3186100 3300500 2615400 2197400 2931900 3388600 2321400 4102300 335420 4826300 3177900 3331300 3314000 2697400 2326000 2850400 3232000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2492200 4394800 125960 4781000 3306500 3186100 3300500 2615400 2197400 2931900 3388600 2321400 4102300 335420 4826300 3177900 3331300 3314000 2697400 2326000 2850400 3232000 1 1 1 1 1 1 1 1 1 1 1 345690000 0 345690000 11344 1272 10524 60209 73150 73150 1 LFIGGLNTETNEK Unmodified 1434.7355 0.73545904 969 P38159;P38159-2;Q96E39;P38159-3 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 yes no 0 0 0 0 By MS/MS By MS/MS 5.69 1.1 3 4 4 5 9 7 62.918 63.131 2;3 1.081E-94 19208 20211116_3445_TMUAki_TMT10x_S_F6 373.9 292.61 173330000 295820000 4134200 338120000 239880000 297330000 198380000 234420000 247560000 230900000 240520000 161410000 276190000 18092000 341340000 229140000 304000000 204920000 241410000 249450000 225650000 232240000 19 19 12 19 19 19 19 19 19 19 19 92203000 154340000 2317900 178450000 172120000 228160000 132570000 124990000 134680000 127420000 129300000 85865000 144100000 10714000 181080000 164170000 227050000 136600000 132360000 136730000 124340000 124900000 12 12 9 12 12 12 12 12 12 12 12 81125000 141480000 1816300 159670000 67756000 69169000 65815000 109430000 112880000 103480000 111220000 75542000 132090000 7378000 160250000 64973000 76952000 68317000 109050000 112720000 101310000 107340000 7 7 3 7 7 7 7 7 7 7 7 27716000000 15691000000 12025000000 11345 969 10525 60210;60211;60212;60213;60214;60215;60216;60217;60218;60219;60220;60221;60222;60223;60224;60225 73151;73152;73153;73154;73155;73156;73157;73158;73159;73160;73161;73162;73163;73164;73165;73166;73167;73168;73169;73170;73171 73169 21 LFIGGLNVQTSESGLR Unmodified 1689.905 0.90498399 1601 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 0 0 0 0 By MS/MS By MS/MS 4.39 3 5 4 1 4 4 10 8 70.525 70.529 2;3 6.1866E-108 22610 20211116_3440_TMUAki_TMT10x_S_F2 369.05 269.24 110410000 189310000 1559100 177840000 130850000 188810000 134900000 127850000 115850000 128530000 144440000 102800000 176600000 9516800 182400000 125570000 190300000 136040000 133080000 119710000 125500000 138450000 28 28 13 28 28 28 28 28 28 28 28 63953000 106100000 970370 98908000 68052000 135540000 79652000 77792000 68733000 77258000 83397000 59550000 98978000 5717800 101960000 65566000 134520000 79850000 81992000 70922000 75476000 79997000 15 15 6 15 15 15 15 15 15 15 15 46452000 83207000 588740 78931000 62793000 53269000 55252000 50056000 47117000 51275000 61039000 43249000 77625000 3799000 80441000 60001000 55777000 56187000 51092000 48783000 50027000 58451000 13 13 7 13 13 13 13 13 13 13 13 53912000000 28154000000 25758000000 11346 1601 10526 60226;60227;60228;60229;60230;60231;60232;60233;60234;60235;60236;60237;60238;60239;60240;60241;60242;60243 73172;73173;73174;73175;73176;73177;73178;73179;73180;73181;73182;73183;73184;73185;73186;73187;73188;73189;73190;73191;73192;73193;73194;73195;73196;73197;73198;73199;73200 73193 29 LFIGGLPNYLNDDQVK Unmodified 1804.9359 0.93594977 812 P26368;P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.645 1 4 7 8 4 74.905 74.924 2;3 1.7931E-36 25271 20211116_3447_TMUAki_TMT10x_S_F8 218.01 180.82 81716000 118370000 285300 145040000 58541000 83928000 86750000 41201000 48104000 56221000 77912000 76083000 110550000 6120800 145160000 56819000 88309000 85323000 44496000 51687000 54290000 74237000 12 12 6 12 12 12 12 12 12 12 12 41092000 59205000 220010 70413000 29068000 49121000 34388000 21074000 24743000 28784000 38087000 38261000 55287000 3281800 70723000 28009000 50724000 34304000 23072000 26067000 27794000 36328000 7 7 4 7 7 7 7 7 7 7 7 40623000 59162000 65294 74625000 29472000 34807000 52362000 20128000 23361000 27438000 39825000 37821000 55262000 2838900 74442000 28811000 37585000 51019000 21424000 25620000 26496000 37908000 5 5 2 5 5 5 5 5 5 5 5 19308000000 10299000000 9008400000 11347 812 10527 60244;60245;60246;60247;60248;60249;60250;60251;60252;60253;60254;60255 73201;73202;73203;73204;73205;73206;73207;73208;73209;73210;73211;73212;73213 73213 13 LFIGGLSFETTDDSLREHFEK Unmodified 2440.1911 0.19105483 1168;1169 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 0 1 By MS/MS By MS/MS 5.19 2.08 1 2 2 2 4 4 2 4 11 10 75.983 75.961 3;4 1.4276E-78 24498 20211116_3445_TMUAki_TMT10x_S_F6 277.01 261.38 187790000 315120000 2812200 273500000 190870000 319430000 240510000 196140000 207330000 223360000 238050000 174860000 293890000 16229000 282640000 184300000 319810000 240340000 206460000 213470000 217020000 228680000 32 32 21 32 32 32 32 32 32 32 32 105110000 168920000 1371900 148340000 93327000 215280000 117480000 110110000 115770000 124780000 131150000 97870000 157540000 8659800 153790000 90100000 212820000 117850000 117700000 118390000 121260000 126040000 17 17 11 17 17 17 17 17 17 17 17 82680000 146200000 1440300 125160000 97545000 104150000 123040000 86034000 91566000 98586000 106900000 76987000 136340000 7569300 128850000 94205000 106990000 122490000 88764000 95074000 95767000 102650000 15 15 10 15 15 15 15 15 15 15 15 57984000000 32166000000 25818000000 11348 1168;1169 10528 60256;60257;60258;60259;60260;60261;60262;60263;60264;60265;60266;60267;60268;60269;60270;60271;60272;60273;60274;60275;60276 73214;73215;73216;73217;73218;73219;73220;73221;73222;73223;73224;73225;73226;73227;73228;73229;73230;73231;73232;73233;73234;73235;73236;73237;73238;73239;73240;73241;73242;73243;73244;73245 73240 32 LFIGGLSFETTDESLR Unmodified 1783.8992 0.89922991 583 P09651;P09651-2;P09651-3;Q32P51 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 0 0 By MS/MS By MS/MS 5.24 1.82 3 4 12 14 26 13 17 13 61 41 68.801 68.808 2;3 1.5479E-231 25669 20211116_3445_TMUAki_TMT10x_S_F6 471.71 431.27 282900000 468730000 1220200 400590000 275200000 444880000 355070000 283340000 320150000 340060000 352670000 263380000 437120000 20376000 414140000 265690000 446860000 354910000 297930000 328380000 329790000 339200000 74 74 37 74 74 74 74 74 74 74 74 160340000 261490000 731420 227620000 149530000 309570000 187320000 164960000 186090000 194680000 194860000 149280000 243870000 11120000 235830000 144200000 307060000 187990000 175900000 189680000 188910000 187700000 44 44 22 44 44 44 44 44 44 44 44 122560000 207240000 488820 172970000 125660000 135320000 167750000 118390000 134070000 145390000 157810000 114100000 193250000 9255500 178310000 121490000 139790000 166920000 122030000 138710000 140880000 151500000 30 30 15 30 30 30 30 30 30 30 30 135500000000 66044000000 69454000000 11349 583 10529 60277;60278;60279;60280;60281;60282;60283;60284;60285;60286;60287;60288;60289;60290;60291;60292;60293;60294;60295;60296;60297;60298;60299;60300;60301;60302;60303;60304;60305;60306;60307;60308;60309;60310;60311;60312;60313;60314;60315;60316;60317;60318;60319;60320;60321;60322;60323;60324;60325;60326;60327;60328;60329;60330;60331;60332;60333;60334;60335;60336;60337;60338;60339;60340;60341;60342;60343;60344;60345;60346;60347;60348;60349;60350;60351;60352;60353;60354;60355;60356;60357;60358;60359;60360;60361;60362;60363;60364;60365;60366;60367;60368;60369;60370;60371;60372;60373;60374;60375;60376;60377;60378 73246;73247;73248;73249;73250;73251;73252;73253;73254;73255;73256;73257;73258;73259;73260;73261;73262;73263;73264;73265;73266;73267;73268;73269;73270;73271;73272;73273;73274;73275;73276;73277;73278;73279;73280;73281;73282;73283;73284;73285;73286;73287;73288;73289;73290;73291;73292;73293;73294;73295;73296;73297;73298;73299;73300;73301;73302;73303;73304;73305;73306;73307;73308;73309;73310;73311;73312;73313;73314;73315;73316;73317;73318;73319;73320;73321;73322;73323;73324;73325;73326;73327;73328;73329;73330;73331;73332;73333;73334;73335;73336;73337;73338;73339;73340;73341;73342;73343;73344;73345;73346;73347;73348;73349;73350;73351;73352;73353;73354;73355;73356 73342 111 LFIGGLSFETTEESLR Unmodified 1797.9149 0.91487997 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 By MS/MS By MS/MS 4.74 1.86 2 3 6 4 12 4 5 3 19 20 79.219 79.208 2;3 4.9687E-124 25365 20211116_3444_TMUAki_TMT10x_S_F5 385.3 322.47 143550000 245540000 1162400 203980000 135840000 241310000 206960000 147710000 180830000 196830000 188420000 133650000 228960000 11149000 211590000 132010000 241420000 205400000 156380000 185370000 190210000 181520000 27 27 9 27 27 27 27 27 27 27 27 76710000 125270000 559670 103370000 73511000 144290000 93367000 78573000 96216000 101330000 96070000 71423000 116810000 5916900 107620000 70977000 142990000 93756000 83885000 97753000 98024000 92680000 14 14 4 14 14 14 14 14 14 14 14 66838000 120260000 602770 100610000 62330000 97021000 113590000 69138000 84612000 95501000 92346000 62231000 112150000 5232600 103970000 61038000 98433000 111650000 72491000 87621000 92185000 88843000 13 13 5 13 13 13 13 13 13 13 13 65202000000 32792000000 32410000000 11350 772 10530 60379;60380;60381;60382;60383;60384;60385;60386;60387;60388;60389;60390;60391;60392;60393;60394;60395;60396;60397;60398;60399;60400;60401;60402;60403;60404;60405;60406;60407;60408;60409;60410;60411;60412;60413;60414;60415;60416;60417 73357;73358;73359;73360;73361;73362;73363;73364;73365;73366;73367;73368;73369;73370;73371;73372;73373;73374;73375;73376;73377;73378;73379;73380;73381;73382;73383;73384;73385;73386;73387;73388;73389;73390;73391;73392;73393;73394;73395 73381 39 LFIGNLPR Unmodified 928.54944 0.54943659 2707 Q9BWF3;Q9BWF3-3;Q9BWF3-4;Q9BWF3-2;Q9BQ04 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 60.838 60.645 2 0.00046793 19154 20211116_3442_TMUAki_TMT10x_S_F4 139.92 50.243 44459000 72441000 124200 73604000 54455000 60725000 45414000 52021000 48833000 50364000 57031000 41393000 67600000 3482100 74814000 51964000 62461000 46644000 53281000 49820000 49256000 54762000 7 7 3 7 7 7 7 7 7 7 7 19191000 29260000 49436 30426000 25141000 37151000 22051000 22103000 20959000 21070000 24400000 17867000 27307000 1413800 31058000 24011000 37094000 22495000 23201000 21492000 20621000 23431000 3 3 1 3 3 3 3 3 3 3 3 25267000 43181000 74764 43178000 29314000 23574000 23363000 29918000 27874000 29294000 32631000 23526000 40292000 2068300 43756000 27953000 25367000 24149000 30080000 28328000 28636000 31331000 4 4 2 4 4 4 4 4 4 4 4 6196900000 3368700000 2828200000 11351 2707 10531 60418;60419;60420;60421;60422;60423 73396;73397;73398;73399;73400;73401;73402;73403 73403 8 LFISGLPFSCTKEELEEICK Unmodified 2399.1753 0.17527011 1753 Q15020;Q15020-4 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 0 0 0 1 By MS/MS 7.5 0.5 1 1 2 78.746 78.756 3 1.2231E-06 25294 20211116_3447_TMUAki_TMT10x_S_F8 90.385 79.696 9346200 16175000 20554 15596000 14292000 10085000 11991000 7836700 6147700 8505700 11224000 8701300 15091000 726040 15869000 13639000 10563000 12102000 8101300 6690000 8279600 10671000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9346200 16175000 20554 15596000 14292000 10085000 11991000 7836700 6147700 8505700 11224000 8701300 15091000 726040 15869000 13639000 10563000 12102000 8101300 6690000 8279600 10671000 2 2 1 2 2 2 2 2 2 2 2 1560300000 0 1560300000 11352 1753 10532 60424;60425 73404;73405 73404 2 LFIVDAR Unmodified 832.48069 0.48068833 3203 Q9UNZ2;Q9UNZ2-5;Q9UNZ2-4;Q9UNZ2-6 NSFL1C NSFL1 cofactor p47 yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 56.732 57.134 2 0.0067229 18189 20211116_3435_TMUAki_TMT10x_P_F7 111.73 32.581 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11353 3203 10533 60426;60427 73406;73407 73407 2 LFIYNPTTGEFLGR Unmodified 1626.8406 0.84059282 1225 P54709 ATP1B3 Sodium/potassium-transporting ATPase subunit beta-3 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 78.339 78.27 2 4.9765E-37 28528 20211116_3441_TMUAki_TMT10x_S_F3 242.45 193.03 14330000 24481000 0 23646000 15938000 20589000 18996000 12848000 10637000 15003000 17348000 13340000 22840000 889330 24136000 15338000 20990000 18850000 13518000 11425000 14564000 16527000 2 2 0 2 2 2 2 2 2 2 2 4794900 8005900 0 7387700 3878700 8623800 5111800 4125700 3871100 5185600 5074600 4463700 7468100 276800 7598800 3743100 8608000 5082200 4453500 4035200 5020900 4858000 1 1 0 1 1 1 1 1 1 1 1 9534700 16475000 0 16258000 12059000 11965000 13884000 8722300 6765800 9817500 12274000 8876000 15372000 612530 16537000 11595000 12382000 13768000 9064700 7390000 9543200 11669000 1 1 0 1 1 1 1 1 1 1 1 5428100000 2909300000 2518800000 11354 1225 10534 60428;60429;60430 73408;73409 73409 2 LFKPGQEAVK Unmodified 1115.6339 0.63389451 2227 Q8NBS9;Q8NBS9-2 TXNDC5 Thioredoxin domain-containing protein 5 yes no 0 0 0 1 By MS/MS 8 0 1 1 43.9 44.075 3 0.001473 11703 20211116_3436_TMUAki_TMT10x_P_F8 76.655 39.962 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11355 2227 10535 60431 73410 73410 1 LFKPPQPPAR Unmodified 1149.6659 0.66586334 186 O15372 EIF3H Eukaryotic translation initiation factor 3 subunit H yes yes 0 0 0 1 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 42.105 42.127 3 0.00086726 10231 20211116_3444_TMUAki_TMT10x_S_F5 81.263 48.001 11466000 17291000 35909 19357000 23536000 21060000 12096000 13074000 13934000 11844000 15090000 10676000 16142000 1090000 19627000 22278000 21170000 12925000 13659000 14136000 11618000 14521000 7 7 2 7 7 7 7 7 7 7 7 9045500 13186000 35909 14907000 20849000 18924000 10043000 9920500 10773000 9240000 11634000 8422200 12310000 908800 15147000 19719000 18829000 10775000 10520000 10958000 9052300 11196000 5 5 2 5 5 5 5 5 5 5 5 2420400 4105100 0 4449200 2687300 2136000 2053000 3153800 3160600 2603700 3456700 2253400 3831800 181160 4480100 2559300 2341600 2149900 3138700 3177400 2565600 3325400 2 2 0 2 2 2 2 2 2 2 2 1147300000 999710000 147540000 11356 186 10536 60432;60433;60434;60435;60436;60437 73411;73412;73413;73414;73415;73416;73417;73418 73418 8 LFLEFER Unmodified 952.50182 0.5018177 229 O43663;O43663-2;O43663-3;O43663-4 PRC1 Protein regulator of cytokinesis 1 yes no 0 0 0 0 By matching By MS/MS 4 0.816 1 1 1 2 1 68.729 68.668 2 0.027904 21165 20211116_3444_TMUAki_TMT10x_S_F5 81.119 0 3430900 5592900 0 5410800 3874000 3483400 3915900 3511200 3652300 3736900 4396600 3194300 5218100 257990 5504000 3713500 3668200 3961800 3575300 3753500 3640400 4218200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3430900 5592900 0 5410800 3874000 3483400 3915900 3511200 3652300 3736900 4396600 3194300 5218100 257990 5504000 3713500 3668200 3961800 3575300 3753500 3640400 4218200 1 1 0 1 1 1 1 1 1 1 1 444200000 221720000 222480000 11357 229 10537 60438;60439;60440 73419 73419 1 LFLEQFSIPTCVLNGELPLR Unmodified 2345.2453 0.24533901 3015 Q9NY93;Q9NY93-2 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 0 0 0 0 By MS/MS 2 0 1 1 81.957 81.955 3 0.0010344 28547 20211116_3429_TMUAki_TMT10x_P_F2 61.276 50.221 703720 1137600 32950 1213600 665110 1381100 809970 709180 708540 824440 890780 655480 1061800 88511 1235200 643370 1381600 810870 758400 731720 800450 853660 1 1 1 1 1 1 1 1 1 1 1 703720 1137600 32950 1213600 665110 1381100 809970 709180 708540 824440 890780 655480 1061800 88511 1235200 643370 1381600 810870 758400 731720 800450 853660 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 136920000 136920000 0 11358 3015 10538 60441 73420 73420 1 LFLLPHK Unmodified 866.53781 0.53780928 1550 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 0 0 By matching By MS/MS 4 0 2 1 1 57.883 57.915 3 0.0058033 18073 20211116_3442_TMUAki_TMT10x_S_F4 92.692 68.538 916560 1389200 1919.2 1963100 513120 637420 759460 751680 745760 784020 1029200 853420 1298400 72127 1942300 498310 733700 757050 759460 769340 764390 984100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 916560 1389200 1919.2 1963100 513120 637420 759460 751680 745760 784020 1029200 853420 1298400 72127 1942300 498310 733700 757050 759460 769340 764390 984100 1 1 1 1 1 1 1 1 1 1 1 395520000 232510000 163020000 11359 1550 10539 60442;60443 73421 73421 1 LFLLPHKDQR Unmodified 1265.7244 0.72444085 1550 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 0 1 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 47.34 47.273 4 0.00083223 13662 20211116_3442_TMUAki_TMT10x_S_F4 91.584 60.756 3150400 5347700 33874 6047500 6257200 6270100 3837800 5713700 5831200 5255500 5660700 2933400 4992600 321230 6123300 5939900 6361300 4081100 5823600 5838900 5151700 5466000 4 4 2 4 4 4 4 4 4 4 4 1527100 2433600 33874 2886700 5047700 4724600 2498900 2665300 2666600 2410100 2574500 1422200 2272500 207490 2940400 4777900 4653500 2673200 2806200 2702200 2364300 2486300 2 2 2 2 2 2 2 2 2 2 2 1623200 2914000 0 3160700 1209500 1545400 1338900 3048400 3164600 2845400 3086300 1511300 2720000 113750 3182900 1162000 1707800 1407900 3017400 3136800 2787400 2979600 2 2 0 2 2 2 2 2 2 2 2 1047000000 582010000 465030000 11360 1550 10540 60444;60445;60446;60447;60448 73422;73423;73424;73425 73425 4 LFLLQQPLAPSGLTLK Unmodified 1738.0393 0.039292625 1982 Q6NTF9;Q6NTF9-2 RHBDD2 Rhomboid domain-containing protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 80.022 80.014 3 3.7483E-05 26132 20211116_3445_TMUAki_TMT10x_S_F6 83.292 68.32 4501300 7570700 42965 7165800 5096700 6583500 5725700 3312500 3148500 4424400 5100300 4191400 7062800 419740 7330200 4905300 6669200 5695100 3566300 3385100 4275300 4859600 2 2 1 2 2 2 2 2 2 2 2 2306900 3977400 42965 3905100 2336600 4230900 3006500 1801400 1738300 2348400 2684600 2148300 3711100 231720 3993800 2259800 4235400 2975300 1970500 1857500 2271000 2560400 1 1 1 1 1 1 1 1 1 1 1 2194300 3593300 0 3260700 2760200 2352600 2719200 1511100 1410200 2076000 2415700 2043100 3351700 188030 3336400 2645500 2433800 2719800 1595800 1527600 2004300 2299200 1 1 0 1 1 1 1 1 1 1 1 987980000 277590000 710380000 11361 1982 10541 60449;60450 73426;73427 73427 2 LFLPEGPCDHTVVK Unmodified 1610.8127 0.81266351 1811 Q15477 SKIV2L Helicase SKI2W yes yes 0 0 0 0 By MS/MS 6.5 0.5 2 2 4 56.89 57.181 3 1.1361E-09 16789 20211116_3445_TMUAki_TMT10x_S_F6 109.44 91.03 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11362 1811 10542 60451;60452;60453;60454 73428;73429;73430;73431 73428 4 LFLPLILK Unmodified 955.64703 0.64702537 1894 Q4G148;Q4G148-2 GXYLT1 Glucoside xylosyltransferase 1 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 80.828 80.855 2 0.0019692 28175 20211116_3435_TMUAki_TMT10x_P_F7 132.94 26.18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11363 1894 10543 60455;60456 73432;73433 73432 2 LFLTMEINPK Oxidation (M) 1220.6475 0.64749566 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 1 0 By MS/MS 8 0 1 1 65.275 65.431 2 0.0014909 20389 20211116_3436_TMUAki_TMT10x_P_F8 84.498 66.462 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11364 1695 10544 60457 73434 73434 2279 1 LFLVQLQEK Unmodified 1116.6543 0.6542956 246 O43809 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 0 0 0 0 By MS/MS By MS/MS 4.2 3.12 1 2 2 3 2 73.556 73.456 2;3 6.2107E-06 25138 20211116_3429_TMUAki_TMT10x_P_F2 167.04 116.16 13917000 25071000 71819 19538000 18179000 23402000 18143000 21813000 21076000 20385000 20325000 12959000 23373000 1256500 20381000 17433000 23567000 18496000 22215000 21286000 19968000 19630000 3 3 2 3 3 3 3 3 3 3 3 4095200 7021000 0 6054800 5277400 10194000 5402200 6329800 5976700 5628200 5516500 3812900 6547700 332100 6307100 5061800 10043000 5491000 6609700 6038800 5525700 5335800 1 1 0 1 1 1 1 1 1 1 1 9821800 18050000 71819 13483000 12901000 13208000 12741000 15483000 15099000 14757000 14808000 9145600 16826000 924360 14074000 12371000 13524000 13005000 15605000 15247000 14442000 14294000 2 2 2 2 2 2 2 2 2 2 2 1718900000 1060600000 658260000 11365 246 10545 60458;60459;60460;60461;60462 73435;73436;73437;73438 73436 4 LFMAQALQEYNN Oxidation (M) 1456.6657 0.66566492 186 O15372 EIF3H Eukaryotic translation initiation factor 3 subunit H yes yes 0 0 1 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 69.606 69.568 2 0.00081711 21445 20211116_3434_TMUAki_TMT10x_P_F6 83.005 64.845 9866000 15599000 15926 15553000 10136000 11739000 10389000 8930800 8845800 8966800 10789000 9185300 14555000 713990 15813000 9717900 12131000 10477000 9223000 9135600 8756000 10348000 5 5 2 5 5 5 5 5 5 5 5 4026400 6486000 12852 6153700 3726300 6446300 4266500 3705000 3819700 3682400 4229000 3749100 6050900 337590 6305700 3587100 6487400 4285600 3904700 3919900 3597400 4066900 2 2 1 2 2 2 2 2 2 2 2 5839600 9112500 3074 9399200 6409300 5292300 6123000 5225800 5026100 5284400 6560200 5436300 8504000 376400 9507000 6130800 5643300 6191900 5318300 5215600 5158600 6280900 3 3 1 3 3 3 3 3 3 3 3 1578500000 460220000 1118200000 11366 186 10546 60463;60464;60465;60466;60467 73439;73440;73441;73442;73443;73444;73445 73441 140 7 LFNEHIEALTK Unmodified 1313.698 0.69795133 132 O14776;O14776-2 TCERG1 Transcription elongation regulator 1 yes no 0 0 0 0 By MS/MS By MS/MS 6 0.707 1 2 1 1 3 55.34 55.572 3 6.1453E-05 15821 20211116_3444_TMUAki_TMT10x_S_F5 89.301 38.166 11117000 18984000 375240 19860000 20946000 22764000 14000000 15721000 14327000 14796000 16050000 10354000 17717000 1409100 20242000 19932000 22853000 14574000 16312000 14622000 14489000 15429000 3 3 3 3 3 3 3 3 3 3 3 8084100 13833000 338350 14133000 17558000 20142000 11253000 11257000 10250000 10637000 11421000 7529600 12909000 1118200 14487000 16697000 19949000 11713000 11875000 10513000 10414000 10981000 2 2 2 2 2 2 2 2 2 2 2 3033200 5150600 36886 5727000 3388500 2622400 2746800 4464200 4076600 4159300 4628600 2824500 4808200 290830 5755400 3235200 2904400 2860900 4436800 4108600 4074700 4448000 1 1 1 1 1 1 1 1 1 1 1 1596800000 616950000 979840000 11367 132 10547 60468;60469;60470;60471 73446;73447;73448;73449 73448 4 LFNLSKEDDVR Unmodified 1334.683 0.68302954 1365 P62753 RPS6 40S ribosomal protein S6 yes yes 0 0 0 1 By MS/MS By MS/MS 5.22 1.31 1 2 2 2 2 5 4 51.503 51.714 3 1.1132E-06 14092 20211116_3434_TMUAki_TMT10x_P_F6 129.37 121.76 82334000 132430000 969630 168510000 155180000 143690000 90152000 127690000 135380000 106220000 127630000 76666000 123700000 8492500 168990000 147200000 147560000 96246000 129990000 135470000 104620000 123360000 11 11 9 11 11 11 11 11 11 11 11 42862000 67851000 761070 86172000 126720000 118690000 65486000 65866000 71258000 54708000 66487000 39913000 63381000 5269800 87102000 120000000 117720000 69806000 69300000 72071000 53891000 64285000 6 6 5 6 6 6 6 6 6 6 6 39472000 64576000 208560 82341000 28460000 25002000 24666000 61825000 64121000 51509000 61144000 36753000 60322000 3222700 81889000 27200000 29835000 26440000 60692000 63400000 50731000 59076000 5 5 4 5 5 5 5 5 5 5 5 10375000000 5304000000 5071500000 11368 1365 10548 60472;60473;60474;60475;60476;60477;60478;60479;60480 73450;73451;73452;73453;73454;73455;73456;73457;73458;73459;73460 73454 11 LFPDTPLALDANK Unmodified 1413.7504 0.75038083 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 0 By MS/MS By MS/MS 5.94 1.26 1 1 4 4 6 1 11 6 75.62 75.654 2;3 1.9207E-29 26349 20211116_3446_TMUAki_TMT10x_S_F7 239.55 201.42 113840000 186430000 372950 179950000 132760000 189900000 128610000 128500000 125760000 129440000 142730000 105990000 173940000 9059400 184180000 127150000 191470000 130580000 133770000 128660000 126380000 137160000 23 23 13 23 23 23 23 23 23 23 23 75240000 120910000 255290 116630000 87098000 149160000 86798000 84345000 83403000 85554000 94191000 70053000 112810000 5945000 119770000 83476000 148490000 87954000 89063000 85380000 83507000 90529000 15 15 8 15 15 15 15 15 15 15 15 38595000 65521000 117660 63320000 45663000 40747000 41811000 44151000 42354000 43883000 48541000 35934000 61130000 3114300 64415000 43675000 42979000 42629000 44710000 43283000 42870000 46634000 8 8 5 8 8 8 8 8 8 8 8 18464000000 9764100000 8700200000 11369 1576 10549 60481;60482;60483;60484;60485;60486;60487;60488;60489;60490;60491;60492;60493;60494;60495;60496;60497 73461;73462;73463;73464;73465;73466;73467;73468;73469;73470;73471;73472;73473;73474;73475;73476;73477;73478;73479;73480;73481;73482;73483;73484;73485;73486 73485 26 LFPDTPLALDANKK Unmodified 1541.8453 0.84534384 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 1 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 65.336 65.49 3 1.2669E-23 19841 20211116_3447_TMUAki_TMT10x_S_F8 191.01 170.63 76570000 124900000 682750 131690000 101860000 126240000 84727000 96265000 101330000 95034000 99945000 71297000 116570000 7040700 133780000 97255000 128270000 87352000 99351000 102310000 92866000 96456000 7 7 5 7 7 7 7 7 7 7 7 43755000 68729000 530940 72965000 66199000 96647000 57406000 52812000 56985000 52787000 55371000 40745000 64147000 4436800 74491000 63286000 96011000 58676000 55907000 57934000 51555000 53465000 4 4 4 4 4 4 4 4 4 4 4 32814000 56175000 151810 58725000 35656000 29594000 27321000 43452000 44340000 42247000 44573000 30552000 52427000 2603900 59293000 33969000 32257000 28675000 43444000 44372000 41310000 42991000 3 3 1 3 3 3 3 3 3 3 3 11127000000 6090300000 5036800000 11370 1576 10550 60498;60499;60500;60501;60502;60503 73487;73488;73489;73490;73491;73492;73493 73492 7 LFPGFEIETVK Unmodified 1278.686 0.68598966 554 P08243;P08243-2;P08243-3 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes no 0 0 0 0 By MS/MS By MS/MS 6.8 0.748 2 2 1 3 2 78.056 78.094 2 7.2344E-11 27464 20211116_3446_TMUAki_TMT10x_S_F7 163.88 123.81 21530000 35534000 234270 32975000 26423000 44125000 36272000 24468000 24832000 28274000 32596000 20048000 33147000 2071800 33987000 25598000 43822000 35923000 25983000 26039000 27457000 31204000 3 3 3 3 3 3 3 3 3 3 3 12755000 19571000 164220 19348000 16495000 30181000 20073000 13148000 13513000 14710000 18177000 11877000 18261000 1262900 19916000 15916000 29696000 19971000 14275000 14199000 14302000 17391000 2 2 2 2 2 2 2 2 2 2 2 8775400 15962000 70046 13627000 9928800 13944000 16199000 11319000 11320000 13564000 14418000 8171300 14886000 808970 14072000 9682000 14127000 15952000 11708000 11839000 13154000 13813000 1 1 1 1 1 1 1 1 1 1 1 4179000000 2345500000 1833400000 11371 554 10551 60504;60505;60506;60507;60508 73494;73495;73496;73497;73498 73498 5 LFPGFEIETVKNNLR Unmodified 1775.957 0.95701956 554 P08243;P08243-2;P08243-3 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes no 0 0 0 1 By MS/MS 2 0 1 1 76.147 76.094 3 0.0063925 24886 20211116_3440_TMUAki_TMT10x_S_F2 62.377 34.516 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11372 554 10552 60509 73499 73499 1 LFPGLAIK Unmodified 857.53747 0.53747492 2596 Q99661 KIF2C Kinesin-like protein KIF2C yes yes 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 72.211 72.04 2 0.0010467 23809 20211116_3442_TMUAki_TMT10x_S_F4 129.16 69.009 22601000 38850000 424740 34269000 29553000 42852000 26623000 30510000 31589000 29773000 30294000 21047000 36234000 2367000 35412000 28289000 42848000 27311000 31622000 31873000 29108000 29264000 5 5 5 5 5 5 5 5 5 5 5 14378000 24300000 300310 21650000 20239000 35050000 18841000 19283000 19775000 19436000 18797000 13390000 22665000 1554000 22474000 19390000 34526000 19213000 20406000 20042000 18976000 18163000 3 3 3 3 3 3 3 3 3 3 3 8222900 14550000 124430 12619000 9313900 7801300 7781500 11228000 11814000 10337000 11497000 7657300 13570000 812980 12938000 8899600 8321600 8098100 11216000 11831000 10133000 11101000 2 2 2 2 2 2 2 2 2 2 2 1674300000 840780000 833550000 11373 2596 10553 60510;60511;60512;60513;60514 73500;73501;73502;73503;73504 73504 5 LFPHCGR Unmodified 885.42794 0.42794125 1312 P61421 ATP6V0D1 V-type proton ATPase subunit d 1 yes yes 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 31.981 31.997 3 0.00046179 8703 20211116_3439_TMUAki_TMT10x_S_F1 142.63 97.656 466100 739370 4403.3 740670 592070 495930 526830 344110 360230 382890 491530 434020 689910 44511 751850 566340 516900 532640 358690 378430 372350 470090 2 2 2 2 2 2 2 2 2 2 2 204710 313330 2273.5 301360 308830 286850 204850 145980 156530 170680 212040 190620 292330 20549 308070 293650 289950 211730 156270 163320 165680 202830 1 1 1 1 1 1 1 1 1 1 1 261390 426040 2129.8 439310 283240 209080 321990 198130 203710 212200 279490 243390 397590 23962 443790 272690 226950 320920 202420 215100 206670 267260 1 1 1 1 1 1 1 1 1 1 1 71754000 29534000 42220000 11374 1312 10554 60515;60516;60517 73505;73506;73507 73507 3 LFPLIQTMHSNLAGK Oxidation (M) 1684.8971 0.89706184 1619 Q13310;Q13310-2;Q13310-3 PABPC4 Polyadenylate-binding protein 4 yes no 0 0 1 0 By MS/MS By MS/MS 4 0 2 1 1 60.971 60.97 3 0.000779 18814 20211116_3431_TMUAki_TMT10x_P_F4 68.972 46.645 16563000 27592000 301090 31803000 19329000 21004000 17076000 12119000 9958700 12701000 19430000 15423000 25762000 1665500 31985000 18493000 21864000 17218000 12788000 10779000 12380000 18450000 2 2 1 2 2 2 2 2 2 2 2 9466300 15910000 301090 18352000 12370000 15811000 11594000 6804800 5823100 7608700 10967000 8816300 14854000 1106100 18512000 11860000 16062000 11622000 7397200 6359100 7397900 10421000 1 1 1 1 1 1 1 1 1 1 1 7096300 11682000 0 13450000 6958800 5192600 5481800 5314500 4135600 5092000 8462700 6607100 10907000 559400 13473000 6633500 5802000 5596000 5390600 4419700 4982300 8029700 1 1 0 1 1 1 1 1 1 1 1 1396100000 882910000 513240000 11375 1619 10555 60518;60519 73508;73509 73508 2172 2 LFPLIQTMHSNLAGK Unmodified 1668.9021 0.90214722 1619 Q13310;Q13310-2;Q13310-3 PABPC4 Polyadenylate-binding protein 4 yes no 0 0 0 0 By MS/MS By MS/MS 6 0.707 1 2 1 2 2 72.304 72.234 3 6.5396E-30 23003 20211116_3445_TMUAki_TMT10x_S_F6 200.19 177.95 8815100 13967000 72245 14177000 8651200 10440000 10499000 5998500 5628000 6861600 9467400 8208300 13034000 795870 14392000 8346000 10766000 10402000 6348800 6074900 6665800 9014000 2 2 2 2 2 2 2 2 2 2 2 3575000 5364200 65564 5767000 3516300 5560400 4247100 2884100 2618000 3021400 3874800 3329200 5006900 356680 5851800 3394000 5617200 4219400 3071500 2779300 2945200 3698900 1 1 1 1 1 1 1 1 1 1 1 5240100 8603200 6681.2 8409700 5134800 4879100 6251900 3114400 3010000 3840200 5592600 4879100 8026900 439190 8540100 4952000 5148600 6182800 3277300 3295600 3720600 5315000 1 1 1 1 1 1 1 1 1 1 1 1345300000 586530000 758780000 11376 1619 10555 60520;60521;60522;60523 73510;73511;73512;73513 73512 4 LFPLNQQDVPDKFK Unmodified 1687.8934 0.89335667 1696 Q14232 EIF2B1 Translation initiation factor eIF-2B subunit alpha yes yes 0 0 0 1 By MS/MS By MS/MS 5.25 3.31 3 1 4 4 4 67.307 67.255 3;4 7.3889E-14 21092 20211116_3436_TMUAki_TMT10x_P_F8 146.96 133.05 48253000 86703000 1113500 69427000 72173000 102640000 67786000 81911000 74277000 76749000 74285000 44936000 80839000 5336200 72544000 69157000 102050000 69189000 84173000 75280000 75170000 71660000 11 11 10 11 11 11 11 11 11 11 11 29480000 50338000 655430 40545000 43413000 77891000 46154000 49692000 45596000 45948000 43925000 27454000 46935000 3213100 42613000 41733000 76413000 46656000 51834000 46351000 45029000 42425000 6 6 5 6 6 6 6 6 6 6 6 18773000 36365000 458060 28882000 28759000 24750000 21632000 32220000 28681000 30801000 30360000 17483000 33904000 2123200 29931000 27424000 25636000 22533000 32339000 28929000 30141000 29235000 5 5 5 5 5 5 5 5 5 5 5 5876400000 3313700000 2562600000 11377 1696 10556 60524;60525;60526;60527;60528;60529;60530;60531 73514;73515;73516;73517;73518;73519;73520;73521;73522;73523;73524;73525 73518 12 LFPNADSKALDLLDK Unmodified 1658.8879 0.88793694 845 P28482 MAPK1 Mitogen-activated protein kinase 1 yes yes 0 0 0 1 By MS/MS 1 0 1 1 69.19 69.001 3 0.086489 23755 20211116_3439_TMUAki_TMT10x_S_F1 34.302 6.6389 8521900 15578000 200190 13205000 10150000 7923500 9806000 6951900 7090100 6882300 10231000 7936200 14527000 915900 13560000 9735700 8375900 9880500 7115200 7443200 6724500 9771800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8521900 15578000 200190 13205000 10150000 7923500 9806000 6951900 7090100 6882300 10231000 7936200 14527000 915900 13560000 9735700 8375900 9880500 7115200 7443200 6724500 9771800 1 1 1 1 1 1 1 1 1 1 1 1602800000 0 1602800000 11378 845 10557 60532 73526 73526 1 LFPNSLDQTDMHGDSEYNIMFGPDICGPGTK 2 Oxidation (M) 3487.5007 0.50065637 832 P27797 CALR Calreticulin yes yes 0 0 2 0 By MS/MS By MS/MS 4.83 1.34 1 2 1 1 1 5 1 76.689 76.69 3;4 2.4993E-10 24753 20211116_3445_TMUAki_TMT10x_S_F6 87.719 80.711 10822000 20969000 451690 17166000 16527000 21247000 14416000 16754000 15780000 16449000 16837000 10080000 19552000 1398100 17841000 15821000 21292000 14775000 17252000 16032000 16077000 16209000 3 3 3 3 3 3 3 3 3 3 3 4621800 7112100 198050 6657200 4000800 8842300 4621200 5198300 4775300 5086800 6066400 4304800 6634600 559050 6856300 3863800 8791300 4659800 5465900 4897200 4972700 5812000 2 2 2 2 2 2 2 2 2 2 2 6200700 13857000 253640 10508000 12526000 12404000 9794500 11556000 11005000 11362000 10771000 5775400 12917000 839050 10985000 11957000 12501000 10115000 11786000 11134000 11104000 10397000 1 1 1 1 1 1 1 1 1 1 1 6241800000 4255200000 1986600000 11379 832 10558 60533;60534;60535;60536;60537;60538 73527;73528;73529;73530 73530 1003;1004 4 LFPNTMLFASEACVGSK Oxidation (M) 1886.8907 0.89065583 481 P04062;P04062-4;P04062-2;P04062-5;P04062-3 GBA Glucosylceramidase yes no 0 0 1 0 By MS/MS 8 0 1 1 76.06 75.954 3 1.2531E-05 24202 20211116_3447_TMUAki_TMT10x_S_F8 91.317 74.438 5752600 9256500 67654 8237200 6632800 7304900 6858400 5664000 5532400 5721400 6973600 5356800 8633500 552310 8461300 6369600 7462400 6903900 5843300 5737400 5585500 6682500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5752600 9256500 67654 8237200 6632800 7304900 6858400 5664000 5532400 5721400 6973600 5356800 8633500 552310 8461300 6369600 7462400 6903900 5843300 5737400 5585500 6682500 2 2 2 2 2 2 2 2 2 2 2 170600000 0 170600000 11380 481 10559 60539 73531;73532 73531 373 2 LFPPDDSPLPVSSR Unmodified 1525.7777 0.77765821 1519 Q05519;Q05519-2 SRSF11 Serine/arginine-rich splicing factor 11 yes no 0 0 0 0 By MS/MS 4 0 1 1 65.621 65.455 2 0.051621 21204 20211116_3442_TMUAki_TMT10x_S_F4 51.567 21.491 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11381 1519 10560 60540 73533 73533 1 LFPPWIKPADTEPPPLLVYK Unmodified 2320.2871 0.28712747 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 79.672 79.666 3 2.5816E-09 26927 20211116_3442_TMUAki_TMT10x_S_F4 116.29 104.85 11885000 19059000 190160 18509000 14288000 17200000 16178000 8898500 6757600 10304000 13888000 11067000 17782000 1196200 18901000 13759000 17417000 16020000 9508500 7540000 10006000 13176000 3 3 3 3 3 3 3 3 3 3 3 7271400 11058000 92483 10988000 7993200 13016000 10000000 5944900 4368500 6675800 8168500 6771100 10318000 699150 11245000 7720300 12976000 9864200 6423100 4825500 6489900 7762200 2 2 2 2 2 2 2 2 2 2 2 4613100 8000400 97674 7520400 6295200 4184200 6178200 2953700 2389100 3628400 5719400 4296000 7463400 497040 7656100 6039100 4440700 6155600 3085400 2714500 3515900 5414200 1 1 1 1 1 1 1 1 1 1 1 2003600000 1245600000 758050000 11382 1997 10561 60541;60542;60543 73534;73535;73536;73537 73537 4 LFPYALAFMPPGYEEDMK Unmodified 2117.9842 0.98422187 2714 Q9BXJ9 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 81.618 81.623 3 3.7988E-08 27089 20211116_3436_TMUAki_TMT10x_P_F8 105.31 96.267 690660 1013700 8258.2 1118000 554360 783710 667760 404280 390890 439490 669280 643140 946270 63048 1128100 534900 810480 662840 431250 419660 427780 637010 1 1 1 1 1 1 1 1 1 1 1 690660 1013700 8258.2 1118000 554360 783710 667760 404280 390890 439490 669280 643140 946270 63048 1128100 534900 810480 662840 431250 419660 427780 637010 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 94287000 94287000 0 11383 2714 10562 60544;60545 73538;73539 73538 2 LFPYALAFMPPGYEEDMK Oxidation (M) 2133.9791 0.97913649 2714 Q9BXJ9 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes yes 0 0 1 0 By MS/MS 8 0 1 1 80.469 80.455 3 0.035238 25982 20211116_3447_TMUAki_TMT10x_S_F8 42.708 33.05 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11384 2714 10562 60546 73540 73540 2914 1 LFQCLLHR Unmodified 1085.5804 0.58041915 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 4.14 0.833 2 2 3 4 3 54.797 54.884 3 3.5993E-13 16607 20211116_3433_TMUAki_TMT10x_P_F5 211.1 167.29 2559900 4274000 0 4629600 3874000 4454800 2620800 4367800 2658200 3313600 3675300 2383400 3989400 210250 4695300 3681800 4547100 2725100 4413700 2738700 3279700 3513900 4 4 0 4 4 4 4 4 4 4 4 1250200 2156000 0 2379600 2699800 3396600 1706400 2070300 1313900 1668400 1794100 1164000 2012600 113630 2427000 2563100 3367700 1770700 2159900 1370800 1646000 1715900 2 2 0 2 2 2 2 2 2 2 2 1309800 2118000 0 2250100 1174200 1058300 914380 2297400 1344300 1645200 1881100 1219400 1976800 96619 2268300 1118700 1179400 954390 2253800 1367900 1633700 1798000 2 2 0 2 2 2 2 2 2 2 2 1919100000 1129700000 789410000 11385 648 10563 60547;60548;60549;60550;60551;60552;60553 73541;73542;73543;73544;73545;73546;73547;73548;73549 73545 9 LFQECCPHSTDR Unmodified 1548.6449 0.64494625 1329;1330 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 0 By MS/MS By MS/MS 2.75 1.48 1 1 1 1 2 2 34.03 33.958 3 0.00014373 9157 20211116_3429_TMUAki_TMT10x_P_F2 89.231 75.267 2024100 3049700 67664 3790600 2326200 2351800 2208700 1452300 1609500 1580600 2214600 1885000 2848500 220120 3793200 2230700 2464400 2227900 1525900 1685100 1538400 2117600 3 3 1 3 3 3 3 3 3 3 3 458610 644720 0 862320 949560 951160 521750 453440 468310 463940 546370 426960 602400 38682 865670 899330 952310 549950 486460 481530 452670 524650 1 1 0 1 1 1 1 1 1 1 1 1565500 2405000 67664 2928300 1376700 1400600 1686900 998890 1141200 1116600 1668200 1458100 2246100 181440 2927600 1331300 1512100 1678000 1039400 1203600 1085700 1592900 2 2 1 2 2 2 2 2 2 2 2 131930000 51613000 80314000 11386 1329;1330 10564 60554;60555;60556;60557 73550;73551;73552 73550 3 LFQEDDEIPLYLK Unmodified 1621.8239 0.8239397 668 P14406 COX7A2 Cytochrome c oxidase subunit 7A2, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3.25 1.39 2 3 4 4 2 1 6 10 78.842 78.813 2;3 9.7057E-15 25833 20211116_3428_TMUAki_TMT10x_P_F1 174.4 150.06 69640000 112450000 391220 106410000 77934000 87049000 79394000 53477000 49786000 60794000 78439000 64841000 104910000 5836800 108690000 74760000 89120000 79540000 56285000 52961000 59073000 74781000 13 13 6 13 13 13 13 13 13 13 13 34390000 53549000 127190 50066000 29767000 49070000 34340000 26548000 24154000 29777000 37564000 32020000 49954000 2658000 51307000 28648000 49544000 34278000 28225000 25494000 28949000 35822000 6 6 2 6 6 6 6 6 6 6 6 35249000 58904000 264030 56344000 48168000 37980000 45055000 26929000 25631000 31016000 40875000 32821000 54954000 3178800 57386000 46112000 39575000 45262000 28060000 27466000 30124000 38959000 7 7 4 7 7 7 7 7 7 7 7 10845000000 5910800000 4934000000 11387 668 10565 60558;60559;60560;60561;60562;60563;60564;60565;60566;60567;60568;60569;60570;60571;60572;60573 73553;73554;73555;73556;73557;73558;73559;73560;73561;73562;73563;73564;73565;73566;73567 73553 15 LFQITPDKIQFER Unmodified 1633.8828 0.88279198 2401 Q969X6;Q969X6-2;Q969X6-3 CIRH1A Cirhin yes no 0 0 0 1 By matching By MS/MS 1 0 2 1 1 67.427 67.324 3 6.9137E-05 23133 20211116_3439_TMUAki_TMT10x_S_F1 96.993 74.795 3724300 6423200 152040 5334800 5272200 4913700 4312300 5409700 4788700 4993600 5428100 3468800 5989500 472150 5513000 5040300 5042900 4439000 5462700 4873500 4894100 5216500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3724300 6423200 152040 5334800 5272200 4913700 4312300 5409700 4788700 4993600 5428100 3468800 5989500 472150 5513000 5040300 5042900 4439000 5462700 4873500 4894100 5216500 1 1 1 1 1 1 1 1 1 1 1 647150000 394320000 252830000 11388 2401 10566 60574;60575 73568 73568 1 LFQQIYSDGSDEVK Unmodified 1627.773 0.77296676 3256 Q9Y2Z0;Q9Y2Z0-2 SUGT1 Suppressor of G2 allele of SKP1 homolog yes no 0 0 0 0 By MS/MS By MS/MS 4.86 0.639 2 4 1 3 4 67.154 67.172 2;3 2.8001E-43 21433 20211116_3431_TMUAki_TMT10x_P_F4 269.04 215.47 19410000 31929000 57627 33077000 20561000 21339000 18896000 13938000 16292000 16093000 21579000 18072000 29798000 1570400 33488000 19669000 22296000 19173000 14609000 16876000 15628000 20653000 5 5 2 5 5 5 5 5 5 5 5 7774700 12574000 8268.3 13543000 8765300 11642000 7675800 5256100 6557400 6073900 8164400 7238700 11737000 619600 13719000 8374700 11833000 7808300 5690800 6777000 5898400 7826100 2 2 1 2 2 2 2 2 2 2 2 11635000 19355000 49359 19534000 11795000 9697200 11220000 8681500 9734700 10019000 13415000 10834000 18061000 950780 19768000 11294000 10463000 11365000 8918000 10099000 9729800 12827000 3 3 1 3 3 3 3 3 3 3 3 2645500000 1417600000 1227800000 11389 3256 10567 60576;60577;60578;60579;60580;60581;60582 73569;73570;73571;73572;73573;73574 73569 6 LFQQIYSDGSDEVKR Unmodified 1783.8741 0.87407779 3256 Q9Y2Z0;Q9Y2Z0-2 SUGT1 Suppressor of G2 allele of SKP1 homolog yes no 0 0 0 1 By MS/MS By MS/MS 5.29 1.03 2 2 2 1 3 4 57.458 57.608 3 1.3527E-38 16624 20211116_3444_TMUAki_TMT10x_S_F5 255.91 225.35 23518000 46284000 233940 33473000 46470000 63178000 35722000 79853000 63157000 62466000 53834000 21899000 43140000 2041400 35497000 44300000 62904000 37646000 79827000 62720000 61724000 52221000 8 8 6 8 8 8 8 8 8 8 8 7743900 15427000 179990 11354000 16032000 33146000 16629000 26521000 21817000 20717000 17513000 7211700 14380000 925850 12196000 15398000 32274000 16997000 27126000 21815000 20473000 17028000 3 3 3 3 3 3 3 3 3 3 3 15774000 30856000 53954 22120000 30437000 30032000 19093000 53331000 41340000 41749000 36321000 14687000 28759000 1115500 23301000 28901000 30630000 20649000 52701000 40904000 41251000 35193000 5 5 3 5 5 5 5 5 5 5 5 3755200000 1529900000 2225300000 11390 3256 10568 60583;60584;60585;60586;60587;60588;60589 73575;73576;73577;73578;73579;73580;73581;73582;73583 73580 9 LFQSNDPTLRR Unmodified 1345.7102 0.71024735 3339 Q9Y678 COPG1 Coatomer subunit gamma-1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 38.244 38.394 3 1.574E-06 8691 20211116_3447_TMUAki_TMT10x_S_F8 125.46 84.574 1149800 1747000 14140 2194300 1436800 1312700 1195100 1494300 1561800 1279200 1704400 1070700 1631800 112520 2193700 1372400 1395800 1236200 1503700 1577900 1258200 1639800 3 3 3 3 3 3 3 3 3 3 3 250940 349920 473.82 444750 608900 569790 322460 295830 317350 284280 338320 233650 326870 26259 448890 576660 566590 341910 314260 323820 278120 325710 1 1 1 1 1 1 1 1 1 1 1 898830 1397000 13667 1749500 827890 742920 872600 1198500 1244400 994930 1366100 837000 1304900 86263 1744900 795770 829160 894290 1189500 1254000 980080 1314100 2 2 2 2 2 2 2 2 2 2 2 182410000 85399000 97008000 11391 3339 10569 60590;60591;60592;60593 73584;73585;73586 73586 3 LFQSNDQTLRR Unmodified 1376.7161 0.71606101 3077 Q9UBF2;Q9UBF2-2 COPG2 Coatomer subunit gamma-2 yes no 0 0 0 1 By MS/MS 1 0 1 1 36.097 36.054 3 0.0086724 10363 20211116_3439_TMUAki_TMT10x_S_F1 65.03 44.16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11392 3077 10570 60594 73587 73587 1 LFQVEYAIEAIK Unmodified 1422.7759 0.7758673 835 P28066 PSMA5 Proteasome subunit alpha type-5 yes yes 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 79.785 79.803 2 2.2474E-06 27754 20211116_3435_TMUAki_TMT10x_P_F7 119.74 85.051 20424000 33538000 593070 31251000 21917000 28423000 22888000 18205000 16150000 20601000 23763000 19021000 31286000 2266900 32000000 21075000 28901000 22957000 19097000 16995000 20021000 22687000 2 2 2 2 2 2 2 2 2 2 2 8449900 12996000 287260 12534000 7790300 15484000 8743400 7643600 6880700 8409400 9410100 7869800 12125000 959030 12863000 7511000 15416000 8761300 8190100 7171200 8181500 8999300 1 1 1 1 1 1 1 1 1 1 1 11974000 20543000 305810 18717000 14126000 12939000 14145000 10562000 9269600 12191000 14353000 11151000 19162000 1307900 19137000 13564000 13485000 14196000 10907000 9823900 11840000 13688000 1 1 1 1 1 1 1 1 1 1 1 2603700000 1223600000 1380100000 11393 835 10571 60595;60596;60597 73588;73589 73588 2 LFSDEAANIYER Unmodified 1426.6729 0.67285879 1583 Q12996 CSTF3 Cleavage stimulation factor subunit 3 yes yes 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 60.522 60.451 2 6.7874E-07 20383 20211116_3430_TMUAki_TMT10x_P_F3 123.01 104.39 4394000 8314200 133390 8585900 7095200 12107000 8127400 6538000 6224600 6504200 6650900 4092200 7759100 525870 8792500 6837200 11991000 8131000 6927400 6430800 6353700 6402700 2 2 1 2 2 2 2 2 2 2 2 4394000 8314200 133390 8585900 7095200 12107000 8127400 6538000 6224600 6504200 6650900 4092200 7759100 525870 8792500 6837200 11991000 8131000 6927400 6430800 6353700 6402700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 648940000 648940000 0 11394 1583 10572 60598;60599 73590;73591 73591 2 LFSELPLAK Unmodified 1016.5906 0.59063271 3232 Q9Y291 MRPS33 28S ribosomal protein S33, mitochondrial yes yes 0 0 0 0 By MS/MS 8 0 1 1 73.867 73.9 2 2.7336E-05 23895 20211116_3436_TMUAki_TMT10x_P_F8 135.83 88.007 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11395 3232 10573 60600 73592 73592 1 LFSLELVDESGEIR Unmodified 1605.825 0.82500233 828 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 78.696 78.652 2 2.1089E-19 25757 20211116_3428_TMUAki_TMT10x_P_F1 152.96 115.77 3208300 5871000 19195 5169000 4571800 4069800 4497400 3023800 2644500 3406300 4038500 2987400 5475600 302970 5306400 4382900 4190300 4508400 3138600 2820900 3311000 3852700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3208300 5871000 19195 5169000 4571800 4069800 4497400 3023800 2644500 3406300 4038500 2987400 5475600 302970 5306400 4382900 4190300 4508400 3138600 2820900 3311000 3852700 1 1 1 1 1 1 1 1 1 1 1 534810000 0 534810000 11396 828 10574 60601;60602 73593;73594 73593 2 LFSSFLK Unmodified 840.47454 0.47454032 617 P11171;P11171-2;P11171-5;P11171-7 EPB41 Protein 4.1 yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 73.989 73.955 2 0.019233 24662 20211116_3442_TMUAki_TMT10x_S_F4 84.097 7.2509 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11397 617 10575 60603;60604 73595;73596 73596 2 LFSSVTFETVEESK Unmodified 1601.7825 0.78246882 2852 Q9HAV4 XPO5 Exportin-5 yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 1.25 2 2 3 1 1 5 4 76.332 76.297 2;3 1.7014E-51 25156 20211116_3431_TMUAki_TMT10x_P_F4 293.62 251.22 15359000 25122000 191110 25050000 15682000 21375000 18836000 13354000 12287000 14198000 18377000 14302000 23442000 1373200 25505000 15122000 21822000 18739000 14008000 13002000 13832000 17539000 5 5 3 5 5 5 5 5 5 5 5 9130700 14373000 164130 14520000 8500300 15314000 11043000 7940200 7310200 8114100 10951000 8502400 13412000 847520 14814000 8220900 15386000 10953000 8450400 7729400 7917500 10452000 3 3 2 3 3 3 3 3 3 3 3 6228500 10750000 26981 10530000 7181600 6061000 7793300 5414000 4976600 6084100 7425300 5799300 10030000 525680 10691000 6901200 6435600 7785900 5557300 5273000 5914400 7087100 2 2 1 2 2 2 2 2 2 2 2 2667100000 1636400000 1030600000 11398 2852 10576 60605;60606;60607;60608;60609;60610;60611;60612;60613 73597;73598;73599;73600;73601;73602;73603 73598 7 LFSSVTFETVEESKAPR Unmodified 1925.9735 0.97345748 2852 Q9HAV4 XPO5 Exportin-5 yes yes 0 0 0 1 By MS/MS By MS/MS 6.75 0.433 1 3 2 2 66.467 66.94 3 7.9651E-48 22767 20211116_3446_TMUAki_TMT10x_S_F7 254.68 230.75 5229100 10801000 202260 6853800 8577400 14162000 8670700 12445000 10399000 10780000 9918800 4870300 10064000 668920 7380100 8239000 13938000 8843600 12690000 10486000 10597000 9583100 2 2 2 2 2 2 2 2 2 2 2 2920000 5892400 137490 3658200 4756800 9992300 5485400 7013600 5724500 5736700 5335500 2719800 5489900 395940 3984500 4587600 9721900 5533400 7243000 5799400 5655300 5159000 1 1 1 1 1 1 1 1 1 1 1 2309100 4908400 64776 3195600 3820700 4170000 3185200 5431400 4674100 5043200 4583300 2150500 4573700 272980 3395600 3651400 4216300 3310200 5447000 4686700 4941400 4424200 1 1 1 1 1 1 1 1 1 1 1 1383700000 695680000 688000000 11399 2852 10577 60614;60615;60616;60617 73604;73605;73606;73607 73606 4 LFTAHNNMTNYATVWASK Oxidation (M) 2083.9786 0.97855964 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 1 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 59.317 59.157 3 6.6338E-09 20871 20211116_3441_TMUAki_TMT10x_S_F3 118.72 100.8 24751000 41952000 127290 43735000 35308000 41375000 31245000 22789000 21171000 24925000 30574000 23046000 39152000 2219800 44456000 33754000 41878000 31594000 24172000 22312000 24255000 29203000 6 6 3 6 6 6 6 6 6 6 6 13331000 21679000 21159 22493000 22886000 31680000 21709000 12252000 11414000 12805000 15629000 12412000 20232000 1202900 23026000 21912000 31270000 21763000 13454000 12212000 12483000 14946000 3 3 1 3 3 3 3 3 3 3 3 11420000 20273000 106130 21242000 12422000 9694600 9536900 10537000 9756800 12120000 14945000 10634000 18921000 1017000 21429000 11842000 10607000 9831400 10718000 10100000 11772000 14257000 3 3 2 3 3 3 3 3 3 3 3 3219500000 1985500000 1234000000 11400 1546 10578 60618;60619;60620;60621 73608;73609;73610;73611;73612;73613 73611 2079 6 LFTAHNNMTNYATVWASK Unmodified 2067.9836 0.98364501 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 65.849 65.896 3 4.7134E-12 20046 20211116_3444_TMUAki_TMT10x_S_F5 126.19 113.26 7204900 12033000 277600 13130000 7660100 4960600 7050700 4380200 3295600 4270900 8033100 6710500 11232000 862420 13195000 7346300 5544400 7067500 4479500 3685100 4175600 7602600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7204900 12033000 277600 13130000 7660100 4960600 7050700 4380200 3295600 4270900 8033100 6710500 11232000 862420 13195000 7346300 5544400 7067500 4479500 3685100 4175600 7602600 2 2 2 2 2 2 2 2 2 2 2 599340000 0 599340000 11401 1546 10578 60622;60623 73614;73615;73616 73615 3 LFTDHGGLNEK Unmodified 1229.6041 0.60405094 2573 Q99453 PHOX2B Paired mesoderm homeobox protein 2B yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 43.556 43.678 3 0.028664 10958 20211116_3444_TMUAki_TMT10x_S_F5 56.02 40.131 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11402 2573 10579 60624;60625;60626 73617;73618;73619 73618 3 LFTEEELAR Unmodified 1106.5608 0.56078914 3184 Q9UMX5 NENF Neudesin yes yes 0 0 0 0 By MS/MS 2 0 1 1 54.378 54.129 2 0.0050257 17272 20211116_3429_TMUAki_TMT10x_P_F2 74.376 32.947 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11403 3184 10580 60627 73620 73620 1 LFTFHADICTLPDTEK Unmodified 1906.9135 0.91349976 38 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS 6.22 1.31 1 2 2 2 2 6 3 69.246 69.365 3 4.0457E-15 23283 20211116_3435_TMUAki_TMT10x_P_F7 145.69 129.55 + 60392000 85775000 453480 77640000 83088000 90794000 76100000 126940000 131010000 118460000 88425000 56230000 80007000 4627300 79977000 79488000 92496000 79257000 126980000 129360000 116040000 86619000 13 13 8 13 13 13 13 13 13 13 13 30939000 45620000 406160 41862000 39280000 65330000 47949000 62326000 63609000 59205000 45379000 28810000 42554000 2958300 43323000 37900000 65039000 48669000 63427000 63380000 57951000 44340000 8 8 6 8 8 8 8 8 8 8 8 29453000 40155000 47316 35778000 43807000 25465000 28151000 64610000 67398000 59256000 43046000 27421000 37452000 1669000 36654000 41588000 27458000 30588000 63555000 65984000 58093000 42279000 5 5 2 5 5 5 5 5 5 5 5 15191000000 7993900000 7196600000 11404 38 10581 60628;60629;60630;60631;60632;60633;60634;60635;60636 73621;73622;73623;73624;73625;73626;73627;73628;73629;73630;73631;73632;73633;73634 73627 14 LFTNFHR Unmodified 933.48209 0.48208531 1465 Q00169 PITPNA Phosphatidylinositol transfer protein alpha isoform yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 3 3 4 2 40.034 39.921 3 0.0004429 11665 20211116_3429_TMUAki_TMT10x_P_F2 141.83 0 692790 1501900 9202.2 1180800 1802900 1836100 1053600 3455700 1052300 989370 1063200 645060 1400200 72654 1237100 1709800 1866500 1107800 3358000 1071000 1067900 1025300 4 4 2 4 4 4 4 4 4 4 4 306760 843060 6778.1 517100 1395700 1413800 599080 2764800 468300 405670 421930 285610 785440 39140 563960 1318100 1415400 645280 2672300 480490 493390 408460 2 2 1 2 2 2 2 2 2 2 2 386040 658860 2424.1 663740 407150 422270 454490 690860 583980 583700 641320 359450 614800 33515 673170 391660 451110 462540 685660 590470 574490 616880 2 2 1 2 2 2 2 2 2 2 2 188290000 104320000 83977000 11405 1465 10582 60637;60638;60639;60640;60641;60642 73635;73636;73637;73638;73639;73640 73635 6 LFTPSPEIVK Unmodified 1129.6383 0.63831118 2272 Q8TCS8 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 62.911 63.368 2 1.2995E-08 20737 20211116_3435_TMUAki_TMT10x_P_F7 129.38 79.259 4311400 7797000 14925 7448200 5080200 4181800 3793800 4834800 5052100 4748500 5692700 4014500 7274200 382120 7574200 4839700 4476300 3954400 4880200 5107300 4641200 5471800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4311400 7797000 14925 7448200 5080200 4181800 3793800 4834800 5052100 4748500 5692700 4014500 7274200 382120 7574200 4839700 4476300 3954400 4880200 5107300 4641200 5471800 1 1 1 1 1 1 1 1 1 1 1 602580000 0 602580000 11406 2272 10583 60643;60644 73641;73642 73641 2 LFVGEPVWTAYNRPADHFEAR Unmodified 2474.2131 0.21312768 2684 Q9BV57;Q9BV57-2 ADI1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase yes no 0 0 0 1 By matching By MS/MS 7.67 0.471 1 2 2 1 62.79 63.08 4 5.4137E-08 18970 20211116_3447_TMUAki_TMT10x_S_F8 100.21 89.421 4122700 7087000 0 8231700 4579100 4220700 4375900 3587200 3517300 3836400 5366200 3838700 6617200 348000 8256900 4385500 4532900 4422700 3686600 3681400 3736600 5119300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4122700 7087000 0 8231700 4579100 4220700 4375900 3587200 3517300 3836400 5366200 3838700 6617200 348000 8256900 4385500 4532900 4422700 3686600 3681400 3736600 5119300 1 1 0 1 1 1 1 1 1 1 1 2614500000 1991800000 622700000 11407 2684 10584 60645;60646;60647 73643 73643 1 LFVGGIKEDTEEHHLR Unmodified 1878.9588 0.95881047 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 1 By MS/MS By MS/MS 4.7 1.58 7 7 11 11 13 8 30 27 41.662 41.76 3;4;5 2.842E-70 11362 20211116_3433_TMUAki_TMT10x_P_F5 314.57 0 128040000 205630000 731510 254400000 236730000 243260000 146800000 183380000 204910000 184300000 190970000 119210000 192050000 9294000 255920000 224680000 247160000 155400000 189490000 205420000 179950000 184660000 65 65 30 65 65 65 65 65 65 65 65 76900000 119930000 360410 147630000 202970000 197820000 106120000 107470000 115710000 106870000 110440000 71596000 112010000 6030400 149400000 192130000 196400000 113010000 113810000 117110000 104400000 106700000 34 34 11 34 34 34 34 34 34 34 34 51141000 85699000 371100 106770000 33766000 45441000 40673000 75902000 89201000 77427000 80527000 47617000 80045000 3263600 106520000 32546000 50759000 42397000 75680000 88315000 75556000 77950000 31 31 19 31 31 31 31 31 31 31 31 63572000000 43230000000 20342000000 11408 772 10585 60648;60649;60650;60651;60652;60653;60654;60655;60656;60657;60658;60659;60660;60661;60662;60663;60664;60665;60666;60667;60668;60669;60670;60671;60672;60673;60674;60675;60676;60677;60678;60679;60680;60681;60682;60683;60684;60685;60686;60687;60688;60689;60690;60691;60692;60693;60694;60695;60696;60697;60698;60699;60700;60701;60702;60703;60704 73644;73645;73646;73647;73648;73649;73650;73651;73652;73653;73654;73655;73656;73657;73658;73659;73660;73661;73662;73663;73664;73665;73666;73667;73668;73669;73670;73671;73672;73673;73674;73675;73676;73677;73678;73679;73680;73681;73682;73683;73684;73685;73686;73687;73688;73689;73690;73691;73692;73693;73694;73695;73696;73697;73698;73699;73700;73701;73702;73703;73704;73705;73706;73707;73708;73709 73659 66 LFVGGIKEDTEEHHLRDYFEEYGK Unmodified 2910.3824 0.38243743 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 2 By MS/MS By MS/MS 5.2 1.4 1 3 2 1 3 5 5 64.489 64.624 5;6 9.6456E-24 19578 20211116_3444_TMUAki_TMT10x_S_F5 159.98 152.42 112700000 182330000 2882100 195110000 125540000 185120000 137170000 122250000 118660000 125740000 136940000 104950000 170180000 12171000 197990000 120840000 187790000 137960000 127580000 122180000 122660000 131540000 18 18 16 18 18 18 18 18 18 18 18 66567000 104790000 1737600 109470000 70946000 132240000 80676000 71099000 68579000 72254000 77265000 61993000 97801000 7174200 111690000 68374000 131940000 80950000 75409000 70605000 70520000 74266000 9 9 8 9 9 9 9 9 9 9 9 46131000 77535000 1144500 85639000 54595000 52875000 56496000 51155000 50084000 53483000 59677000 42961000 72379000 4996800 86304000 52465000 55848000 57009000 52168000 51573000 52138000 57271000 9 9 8 9 9 9 9 9 9 9 9 11384000000 6862400000 4521100000 11409 772 10586 60705;60706;60707;60708;60709;60710;60711;60712;60713;60714 73710;73711;73712;73713;73714;73715;73716;73717;73718;73719;73720;73721;73722;73723;73724;73725;73726;73727 73722 18 LFVGGLDWSTTQETLR Unmodified 1821.9261 0.92611336 2447 Q96EP5;Q96EP5-2 DAZAP1 DAZ-associated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 3 3 3 3 78.384 78.405 2;3 9.1963E-21 25152 20211116_3447_TMUAki_TMT10x_S_F8 162.22 117.91 27422000 44912000 439350 35958000 29709000 42590000 36348000 25112000 20860000 26940000 30538000 25536000 41874000 2714900 37415000 28680000 42586000 36042000 26469000 22243000 26235000 29159000 5 5 5 5 5 5 5 5 5 5 5 18381000 29596000 326710 23314000 18247000 33929000 24579000 18693000 14386000 19145000 19838000 17117000 27593000 1826500 24387000 17675000 33568000 24285000 19788000 15274000 18679000 18968000 3 3 3 3 3 3 3 3 3 3 3 9041100 15315000 112640 12644000 11462000 8660800 11769000 6418700 6474600 7795000 10700000 8419000 14281000 888450 13028000 11005000 9018300 11757000 6680400 6968400 7556300 10191000 2 2 2 2 2 2 2 2 2 2 2 5876300000 2603500000 3272700000 11410 2447 10587 60715;60716;60717;60718;60719;60720 73728;73729;73730;73731;73732 73732 5 LFVGGLK Unmodified 732.45341 0.45341094 1601 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 0 0 0 0 By MS/MS By MS/MS 2.96 2.16 6 6 6 2 3 12 11 58.504 58.299 2 0.001158 16717 20211116_3428_TMUAki_TMT10x_P_F1 140.79 0 255370000 365220000 2174800 431950000 272600000 338730000 240500000 213710000 222810000 245920000 279110000 237770000 341030000 20290000 434560000 260500000 348020000 245080000 224550000 229450000 238850000 267510000 22 22 8 22 22 22 22 22 22 22 22 154960000 210880000 500130 251840000 200530000 238430000 136340000 125020000 137070000 146360000 161610000 144270000 196930000 11675000 253830000 190550000 241170000 141680000 133480000 140280000 142060000 155140000 11 11 3 11 11 11 11 11 11 11 11 100410000 154330000 1674700 180110000 72069000 100300000 104160000 88683000 85745000 99558000 117510000 93494000 144110000 8614800 180730000 69954000 106840000 103400000 91079000 89164000 96786000 112370000 11 11 5 11 11 11 11 11 11 11 11 26128000000 13838000000 12291000000 11411 1601 10588 60721;60722;60723;60724;60725;60726;60727;60728;60729;60730;60731;60732;60733;60734;60735;60736;60737;60738;60739;60740;60741;60742;60743 73733;73734;73735;73736;73737;73738;73739;73740;73741;73742;73743;73744;73745;73746;73747;73748;73749;73750;73751;73752;73753;73754;73755;73756;73757;73758 73733 26 LFVGGLSFDTNEQSLEQVFSK Unmodified 2344.1587 0.15869207 1673 Q14011;Q14011-2 CIRBP Cold-inducible RNA-binding protein yes no 0 0 0 0 By MS/MS By MS/MS 6.22 1.31 1 2 2 2 2 5 4 80.861 80.869 3 1.0929E-55 28185 20211116_3435_TMUAki_TMT10x_P_F7 231.77 204.74 45096000 75315000 171220 63211000 51489000 68518000 59669000 40378000 43278000 47466000 53506000 41988000 70232000 3694200 65420000 49567000 68842000 59589000 42686000 45108000 46066000 51298000 14 14 6 14 14 14 14 14 14 14 14 23003000 37283000 68992 32931000 21169000 43049000 27033000 21897000 23011000 24388000 27466000 21418000 34773000 1859900 34053000 20444000 42756000 26990000 23405000 23744000 23716000 26357000 7 7 2 7 7 7 7 7 7 7 7 22093000 38033000 102230 30280000 30319000 25469000 32635000 18482000 20267000 23078000 26040000 20569000 35459000 1834300 31366000 29123000 26086000 32599000 19281000 21364000 22350000 24941000 7 7 4 7 7 7 7 7 7 7 7 14031000000 8240500000 5790400000 11412 1673 10589 60744;60745;60746;60747;60748;60749;60750;60751;60752 73759;73760;73761;73762;73763;73764;73765;73766;73767;73768;73769;73770;73771;73772 73762 14 LFVGLEHAVPTFNVK Unmodified 1669.9192 0.91917749 2095 Q7Z7F0;Q7Z7F0-3;Q7Z7F0-2 KIAA0907 UPF0469 protein KIAA0907 yes no 0 0 0 0 By MS/MS 3 0 1 1 76.187 76.051 3 7.5515E-05 27650 20211116_3441_TMUAki_TMT10x_S_F3 84.566 65.786 2493100 4571500 0 3875900 3395500 2912800 3066800 2713500 2570500 2713600 3096000 2321300 4263100 215530 3988800 3247200 3022300 3112600 2769000 2655400 2650300 2970300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2493100 4571500 0 3875900 3395500 2912800 3066800 2713500 2570500 2713600 3096000 2321300 4263100 215530 3988800 3247200 3022300 3112600 2769000 2655400 2650300 2970300 1 1 0 1 1 1 1 1 1 1 1 304140000 0 304140000 11413 2095 10590 60753 73773 73773 1 LFVGNLPADITEDEFK Unmodified 1806.904 0.90398093 777 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 By MS/MS By MS/MS 3.65 1.37 5 3 4 3 2 9 8 79.086 79.061 2;3 2.7532E-29 25451 20211116_3444_TMUAki_TMT10x_S_F5 196.24 181.55 68394000 106580000 323700 115750000 68422000 80543000 76885000 54244000 52888000 59399000 76437000 63681000 99484000 5604600 116910000 65814000 83632000 76803000 56633000 55690000 57800000 73007000 14 14 5 14 14 14 14 14 14 14 14 29559000 46476000 323700 50798000 23035000 42806000 28421000 24318000 23729000 26250000 32733000 27525000 43383000 2622300 51397000 22239000 43685000 28402000 25716000 24665000 25558000 31298000 6 6 5 6 6 6 6 6 6 6 6 38835000 60103000 0 64948000 45387000 37737000 48464000 29926000 29160000 33148000 43704000 36157000 56100000 2982300 65508000 43575000 39947000 48401000 30917000 31026000 32242000 41709000 8 8 0 8 8 8 8 8 8 8 8 17153000000 8861200000 8291700000 11414 777 10591 60754;60755;60756;60757;60758;60759;60760;60761;60762;60763;60764;60765;60766;60767;60768;60769;60770 73774;73775;73776;73777;73778;73779;73780;73781;73782;73783;73784;73785;73786;73787;73788;73789 73788 16 LFVGNLPADITEDEFKR Unmodified 1963.0051 0.005091963 777 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 1 By MS/MS By MS/MS 5.31 1.94 2 2 2 3 6 5 10 2 15 17 61.82 61.834 2;3;4 1.7984E-60 23912 20211116_3445_TMUAki_TMT10x_S_F6 285.94 264.1 275480000 452180000 2447100 409380000 302430000 434690000 320650000 303260000 271600000 308370000 342890000 256510000 421770000 24440000 421040000 290520000 438320000 322780000 315120000 280980000 300960000 328560000 38 38 21 38 38 38 38 38 38 38 38 166570000 264630000 1674100 239130000 154010000 299330000 177250000 178830000 161560000 185160000 203820000 155100000 246830000 14657000 246660000 148320000 298520000 178090000 188090000 166550000 180570000 195310000 20 20 11 20 20 20 20 20 20 20 20 108910000 187550000 772980 170250000 148420000 135360000 143400000 124440000 110040000 123210000 139070000 101410000 174940000 9782400 174380000 142200000 139800000 144680000 127030000 114430000 120380000 133260000 18 18 10 18 18 18 18 18 18 18 18 109180000000 52977000000 56207000000 11415 777 10592 60771;60772;60773;60774;60775;60776;60777;60778;60779;60780;60781;60782;60783;60784;60785;60786;60787;60788;60789;60790;60791;60792;60793;60794;60795;60796;60797;60798;60799;60800;60801;60802 73790;73791;73792;73793;73794;73795;73796;73797;73798;73799;73800;73801;73802;73803;73804;73805;73806;73807;73808;73809;73810;73811;73812;73813;73814;73815;73816;73817;73818;73819;73820;73821;73822;73823;73824;73825;73826;73827;73828 73821 39 LFVGNLPPDITEEEMR Oxidation (M) 1874.9084 0.90841439 1779 Q15233 NONO Non-POU domain-containing octamer-binding protein yes yes 0 0 1 0 By MS/MS By MS/MS 3.23 1.05 1 2 4 5 1 6 7 71.737 71.555 2;3 0.00064661 25042 20211116_3430_TMUAki_TMT10x_P_F3 63.681 55.9 36202000 60923000 846130 52505000 42021000 56783000 44940000 48387000 44900000 44599000 47010000 33713000 56816000 3791900 54222000 40411000 57395000 45430000 49507000 45754000 43713000 45283000 18 18 15 18 18 18 18 18 18 18 18 13657000 21203000 288290 18931000 13380000 29681000 17090000 17508000 17039000 17302000 17492000 12718000 19776000 1341800 19633000 12936000 29300000 17140000 18409000 17353000 16907000 16860000 8 8 6 8 8 8 8 8 8 8 8 22544000 39720000 557830 33574000 28641000 27103000 27849000 30879000 27861000 27296000 29517000 20995000 37040000 2450000 34589000 27475000 28094000 28290000 31098000 28402000 26806000 28423000 10 10 9 10 10 10 10 10 10 10 10 6250000000 3226900000 3023100000 11416 1779 10593 60803;60804;60805;60806;60807;60808;60809;60810;60811;60812;60813;60814;60815 73829;73830;73831;73832;73833;73834;73835;73836;73837;73838;73839;73840;73841;73842;73843;73844;73845;73846;73847;73848;73849;73850;73851 73836 2390 23 LFVGNLPPDITEEEMR Unmodified 1858.9135 0.91349976 1779 Q15233 NONO Non-POU domain-containing octamer-binding protein yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 1.32 1 1 1 3 2 2 6 76.415 76.413 2;3 4.1845E-39 27813 20211116_3441_TMUAki_TMT10x_S_F3 196.38 183.61 6794500 11460000 30750 10107000 7703400 9215100 7890500 5362600 4909500 5297100 7687700 6326400 10688000 582610 10393000 7391500 9356200 7901600 5644700 5223600 5176100 7330000 3 3 1 3 3 3 3 3 3 3 3 3130900 5247400 30750 4711700 3146800 5326600 3627300 2694400 2443400 2737100 3777100 2915400 4894300 287140 4853800 3031100 5329300 3617600 2873600 2584900 2671500 3602400 2 2 1 2 2 2 2 2 2 2 2 3663600 6212800 0 5395300 4556600 3888500 4263100 2668100 2466000 2559900 3910600 3411000 5794100 295470 5539300 4360400 4026900 4284000 2771100 2638600 2504600 3727700 1 1 0 1 1 1 1 1 1 1 1 1541700000 728860000 812870000 11417 1779 10593 60816;60817;60818;60819;60820;60821;60822;60823 73852;73853;73854;73855;73856;73857;73858 73856 7 LFVGNLPTDITEEDFK Unmodified 1836.9145 0.91454562 2323 Q8WXF1;Q8WXF1-2 PSPC1 Paraspeckle component 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 78.766 78.763 3 0.027286 25391 20211116_3444_TMUAki_TMT10x_S_F5 41.088 22.95 7042700 10725000 24994 10814000 7797500 9249000 8804000 5732300 4911400 5865600 7767700 6557500 10008000 599710 11003000 7502300 9439800 8757200 6009700 5268200 5723100 7404800 2 2 1 2 2 2 2 2 2 2 2 3545000 5196600 0 4898800 3184600 5417700 3916400 2540500 1935500 2562800 3351400 3300600 4847800 270810 5026400 3070700 5422600 3873000 2728900 2106000 2502000 3189200 1 1 0 1 1 1 1 1 1 1 1 3497700 5528700 24994 5915600 4613000 3831300 4887600 3191900 2975900 3302800 4416200 3256900 5160300 328890 5976400 4431600 4017200 4884200 3280900 3162200 3221100 4215600 1 1 1 1 1 1 1 1 1 1 1 1983000000 702780000 1280200000 11418 2323 10594 60824;60825;60826 73859 73859 1 LFVGNLPTDITEEDFKR Unmodified 1993.0157 0.015656649 2323 Q8WXF1;Q8WXF1-2 PSPC1 Paraspeckle component 1 yes no 0 0 0 1 By MS/MS By MS/MS 5.31 1.49 2 2 3 3 2 1 6 7 74.144 74.116 3;4 1.0442E-52 23327 20211116_3434_TMUAki_TMT10x_P_F6 258.14 222.48 126840000 209370000 1863500 200930000 144820000 187610000 154270000 124440000 111800000 135060000 155440000 118110000 195330000 11606000 205380000 139150000 190530000 154670000 130030000 117140000 131460000 148590000 19 19 14 19 19 19 19 19 19 19 19 73927000 117070000 651010 112530000 73823000 129840000 88341000 70241000 63150000 77298000 86672000 68831000 109220000 5867200 115380000 71133000 129870000 88069000 74636000 66181000 75203000 82881000 10 10 6 10 10 10 10 10 10 10 10 52911000 92301000 1212400 88400000 70998000 57768000 65926000 54200000 48649000 57757000 68767000 49275000 86113000 5738400 90000000 68020000 60659000 66602000 55394000 50962000 56262000 65714000 9 9 8 9 9 9 9 9 9 9 9 19245000000 8973700000 10272000000 11419 2323 10595 60827;60828;60829;60830;60831;60832;60833;60834;60835;60836;60837;60838;60839 73860;73861;73862;73863;73864;73865;73866;73867;73868;73869;73870;73871;73872;73873;73874;73875;73876;73877;73878 73866 19 LFVGSIPK Unmodified 859.51674 0.51673948 271;272;211 O60506;O60506-2;O60506-3;O60506-4;O60506-5;O43390;O43390-2;O43390-3;O43390-4 SYNCRIP;HNRNPR Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R no no 0 0 0 0 By MS/MS By MS/MS 3.5 2.22 2 2 4 2 2 6 6 61.306 61.146 2;3 0.00044427 20113 20211116_3429_TMUAki_TMT10x_P_F2 150.84 115.73 260190000 409210000 2494000 431470000 358420000 402010000 296200000 338020000 319350000 324360000 351240000 242270000 381920000 23894000 438160000 342170000 409920000 304420000 346500000 325000000 317350000 337840000 19 19 8 19 19 19 19 19 19 19 19 129410000 200150000 406830 210540000 216610000 279860000 168900000 165370000 157940000 162210000 170450000 120490000 186800000 11686000 215090000 206480000 278260000 173480000 173820000 161600000 158560000 164040000 11 11 4 11 11 11 11 11 11 11 11 130780000 209060000 2087100 220930000 141810000 122150000 127300000 172650000 161410000 162150000 180790000 121780000 195120000 12208000 223070000 135690000 131660000 130940000 172680000 163410000 158800000 173800000 8 8 4 8 8 8 8 8 8 8 8 23737000000 13386000000 10351000000 11420 271;272;211 10596 60840;60841;60842;60843;60844;60845;60846;60847;60848;60849;60850;60851 73879;73880;73881;73882;73883;73884;73885;73886;73887;73888;73889;73890;73891;73892;73893;73894;73895;73896;73897;73898;73899 73882 21 LFVINEVCEMK Unmodified 1380.6781 0.67814386 2280 Q8TDN6 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 0 0 0 0 By MS/MS 5 0 1 1 76.043 76.072 2 0.0040303 25283 20211116_3433_TMUAki_TMT10x_P_F5 75.416 0.32811 3338600 5535800 0 5540700 3326900 5501800 3956400 2743100 2607800 2781600 3878400 3108400 5165500 257800 5651500 3204600 5545300 3938400 2929400 2757100 2715100 3702100 1 1 0 1 1 1 1 1 1 1 1 3338600 5535800 0 5540700 3326900 5501800 3956400 2743100 2607800 2781600 3878400 3108400 5165500 257800 5651500 3204600 5545300 3938400 2929400 2757100 2715100 3702100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 263940000 263940000 0 11421 2280 10597 60852 73900 73900 1 LFVIRPSR Unmodified 986.60253 0.6025348 231 O43674 NDUFB5 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 42.524 43.042 3 0.00030732 12968 20211116_3446_TMUAki_TMT10x_S_F7 137.84 79.557 1643800 2461700 17806 2849000 1834700 1848200 1589200 1493500 1510800 1533700 1854400 1530700 2298500 155550 2864200 1754100 1936600 1622400 1537600 1552600 1496200 1778300 3 3 3 3 3 3 3 3 3 3 3 448330 641770 8245.4 750810 777760 719290 436490 443740 437710 457720 516710 417500 599250 49468 757770 737670 728520 460640 465490 448050 446460 496010 1 1 1 1 1 1 1 1 1 1 1 1195500 1820000 9560.2 2098200 1057000 1128900 1152700 1049700 1073100 1076000 1337700 1113200 1699300 106080 2106400 1016500 1208100 1161800 1072100 1104500 1049800 1282300 2 2 2 2 2 2 2 2 2 2 2 125850000 65228000 60620000 11422 231 10598 60853;60854;60855 73901;73902;73903;73904 73904 4 LFVLTTK Unmodified 820.50584 0.50584045 2545 Q96RS6;Q96RS6-2;Q96RS6-3 NUDCD1 NudC domain-containing protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 64.602 64.573 2 0.025047 20893 20211116_3442_TMUAki_TMT10x_S_F4 82.671 34.928 3771700 6720800 2270.1 6320300 4267500 3869700 3837800 4971100 5058600 4939700 5558000 3511800 6269700 321760 6439300 4081200 4118100 3953100 4997700 5110600 4825600 5346100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3771700 6720800 2270.1 6320300 4267500 3869700 3837800 4971100 5058600 4939700 5558000 3511800 6269700 321760 6439300 4081200 4118100 3953100 4997700 5110600 4825600 5346100 1 1 1 1 1 1 1 1 1 1 1 404760000 183010000 221740000 11423 2545 10599 60856;60857;60858 73905;73906 73906 2 LFVPALDKPETDLLSHLDR Unmodified 2178.1685 0.1684689 3193 Q9UNI6 DUSP12 Dual specificity protein phosphatase 12 yes yes 0 0 0 1 By MS/MS By matching 7.33 0.471 2 1 1 2 76.569 76.606 4 1.6988E-17 26366 20211116_3435_TMUAki_TMT10x_P_F7 148.44 124.4 10779000 16153000 0 13692000 10479000 17739000 12637000 7451800 7061700 8883200 8703000 10035000 15064000 645480 14203000 10087000 17590000 12533000 8138500 7486200 8616900 8344600 1 1 0 1 1 1 1 1 1 1 1 10779000 16153000 0 13692000 10479000 17739000 12637000 7451800 7061700 8883200 8703000 10035000 15064000 645480 14203000 10087000 17590000 12533000 8138500 7486200 8616900 8344600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3609500000 1150000000 2459500000 11424 3193 10600 60859;60860;60861 73907 73907 1 LFVPEPRPVPK Unmodified 1277.7496 0.74959297 2123 Q86X10;Q86X10-3;Q86X10-2 RALGAPB Ral GTPase-activating protein subunit beta yes no 0 0 0 1 By MS/MS 2 0 1 1 50.571 50.421 3 0.003434 14494 20211116_3440_TMUAki_TMT10x_S_F2 69.979 50.885 2180200 3850900 56314 3957600 2565800 2228500 2095100 3836100 3929400 3224000 3662900 2030400 3593700 238630 4004000 2451800 2413000 2206500 3800900 3907800 3174000 3541700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2180200 3850900 56314 3957600 2565800 2228500 2095100 3836100 3929400 3224000 3662900 2030400 3593700 238630 4004000 2451800 2413000 2206500 3800900 3907800 3174000 3541700 1 1 1 1 1 1 1 1 1 1 1 184170000 0 184170000 11425 2123 10601 60862 73908 73908 1 LFVSDGVPGCLPVLAAAGR Unmodified 1898.0084 0.0084032019 1254 P56192;P56192-2 MARS Methionine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 3 3 3 3 78.849 78.797 2;3 1.1548E-50 25994 20211116_3440_TMUAki_TMT10x_S_F2 232.98 192.87 18609000 30139000 105430 29301000 23322000 32260000 23871000 22391000 20720000 22712000 25084000 17324000 28120000 1337600 29995000 22358000 32460000 24087000 23274000 21371000 22169000 24063000 5 5 1 5 5 5 5 5 5 5 5 11781000 18328000 105430 18166000 12434000 23408000 14428000 13279000 12947000 13524000 14836000 10968000 17101000 897350 18622000 11967000 23296000 14485000 14020000 13303000 13198000 14253000 3 3 1 3 3 3 3 3 3 3 3 6828100 11812000 0 11135000 10888000 8851200 9442500 9112400 7772700 9188300 10248000 6356200 11019000 440280 11373000 10392000 9163700 9601800 9254000 8068200 8970700 9809100 2 2 0 2 2 2 2 2 2 2 2 7238200000 4039800000 3198500000 11426 1254 10602 60863;60864;60865;60866;60867;60868 73909;73910;73911;73912;73913 73912 5 LFVSGACDASAK Unmodified 1224.5809 0.58087266 1376 P62873;P62873-2 GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 yes no 0 0 0 0 By MS/MS By MS/MS 6.43 0.495 4 3 3 4 50.306 50.549 2;3 3.2118E-19 14016 20211116_3445_TMUAki_TMT10x_S_F6 221.5 172.7 9487300 15579000 156800 17470000 15653000 13849000 10970000 12677000 12447000 11081000 14070000 8834700 14544000 1002600 17635000 14899000 14305000 11418000 12901000 12656000 10888000 13523000 5 5 4 5 5 5 5 5 5 5 5 3602300 5748400 89918 6595200 9069000 8704500 5275700 4826400 4906800 4379300 5362100 3354700 5367000 459020 6699900 8605900 8650300 5538300 5089500 5024100 4295400 5158500 2 2 2 2 2 2 2 2 2 2 2 5885100 9830400 66882 10875000 6583600 5144500 5694100 7851000 7540600 6701400 8707800 5479900 9176700 543550 10935000 6293300 5655200 5879500 7811400 7631900 6592300 8364000 3 3 2 3 3 3 3 3 3 3 3 928430000 289170000 639260000 11427 1376 10603 60869;60870;60871;60872;60873;60874;60875 73914;73915;73916;73917;73918;73919 73917 6 LFVTNDAATILR Unmodified 1332.7402 0.74015049 1146 P50990;P50990-2 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 By MS/MS By MS/MS 5.94 2.26 2 2 2 2 3 6 8 9 68.586 68.636 2;3 1.539E-39 21107 20211116_3447_TMUAki_TMT10x_S_F8 295.35 244.28 177170000 296850000 3065800 272820000 208400000 288660000 212470000 201830000 187470000 200250000 224360000 164970000 276910000 16585000 280250000 200020000 291140000 214530000 209540000 193120000 195640000 215290000 22 22 11 22 22 22 22 22 22 22 22 110130000 178540000 1698800 163770000 120350000 213620000 134300000 124520000 112880000 121660000 137280000 102550000 166550000 9993600 168870000 115800000 212540000 134840000 131010000 116640000 118940000 131670000 12 12 6 12 12 12 12 12 12 12 12 67039000 118310000 1366900 109040000 88047000 75046000 78167000 77309000 74586000 78593000 87086000 62425000 110360000 6591500 111390000 84223000 78599000 79694000 78527000 76479000 76705000 83622000 10 10 5 10 10 10 10 10 10 10 10 55632000000 30870000000 24762000000 11428 1146 10604 60876;60877;60878;60879;60880;60881;60882;60883;60884;60885;60886;60887;60888;60889;60890;60891;60892 73920;73921;73922;73923;73924;73925;73926;73927;73928;73929;73930;73931;73932;73933;73934;73935;73936;73937;73938;73939;73940;73941;73942;73943;73944;73945 73942 26 LFVVPADEAQAR Unmodified 1314.6932 0.6932003 2136 Q8IV08 PLD3 Phospholipase D3 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 56.851 56.819 2 1.5162E-11 16337 20211116_3444_TMUAki_TMT10x_S_F5 163.88 127.48 41138000 68764000 265950 76840000 55604000 57656000 42028000 46182000 44979000 44694000 55689000 38304000 64194000 3640700 77533000 52977000 59661000 43432000 47489000 46010000 43712000 53390000 9 9 5 9 9 9 9 9 9 9 9 17470000 26453000 74062 31603000 30744000 35364000 21294000 18874000 18800000 18520000 22362000 16266000 24702000 1552200 31933000 29236000 35424000 22017000 20011000 19362000 18102000 21462000 4 4 2 4 4 4 4 4 4 4 4 23668000 42311000 191890 45237000 24860000 22292000 20733000 27308000 26179000 26174000 33327000 22038000 39492000 2088600 45600000 23741000 24237000 21415000 27478000 26648000 25610000 31928000 5 5 3 5 5 5 5 5 5 5 5 3322800000 1774900000 1548000000 11429 2136 10605 60893;60894;60895;60896;60897;60898 73946;73947;73948;73949;73950;73951;73952;73953;73954 73954 9 LFYHIVDSDEVSTK Unmodified 1651.8094 0.80935227 3219 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 5.78 1.31 2 2 2 2 1 4 5 58.918 59.084 3 2.2059E-14 17281 20211116_3444_TMUAki_TMT10x_S_F5 139.48 125 43829000 71628000 268570 78436000 76739000 82748000 57807000 48967000 45399000 47451000 52842000 40809000 66862000 4024200 79601000 73100000 83273000 59242000 51445000 46993000 46406000 50744000 9 9 4 9 9 9 9 9 9 9 9 36165000 58614000 240820 65494000 68160000 75198000 50262000 39609000 37093000 38519000 42832000 33673000 54719000 3412500 66474000 64903000 75208000 51511000 42036000 38515000 37664000 41141000 7 7 3 7 7 7 7 7 7 7 7 7664000 13014000 27757 12941000 8578800 7550600 7544400 9357300 8306400 8932600 10010000 7135700 12143000 611700 13127000 8197300 8065100 7730300 9410000 8477500 8741500 9603500 2 2 1 2 2 2 2 2 2 2 2 3042800000 2558400000 484400000 11430 3219 10606 60899;60900;60901;60902;60903;60904;60905;60906;60907 73955;73956;73957;73958;73959;73960;73961;73962;73963;73964;73965;73966 73964 12 LFYLALPPTVYEAVTK Unmodified 1824.0073 0.0073237944 626 P11413;P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS 3.1 0.831 3 3 4 5 5 81.386 81.369 2;3 2.4345E-21 27629 20211116_3442_TMUAki_TMT10x_S_F4 167.32 153.92 37338000 58379000 440110 55754000 45197000 52062000 47782000 32890000 32248000 36839000 40786000 34766000 54464000 3334500 57009000 43411000 52835000 47852000 34526000 33789000 35816000 39080000 11 11 7 11 11 11 11 11 11 11 11 16828000 25694000 286990 24679000 14937000 27795000 18714000 15509000 14458000 16444000 18494000 15670000 23971000 1608000 25295000 14433000 27847000 18654000 16417000 15038000 16022000 17716000 4 4 3 4 4 4 4 4 4 4 4 20510000 32685000 153120 31075000 30260000 24267000 29068000 17380000 17789000 20395000 22292000 19096000 30493000 1726500 31714000 28978000 24987000 29198000 18109000 18751000 19795000 21365000 7 7 4 7 7 7 7 7 7 7 7 12700000000 6861500000 5838700000 11431 626 10607 60908;60909;60910;60911;60912;60913;60914;60915;60916;60917 73967;73968;73969;73970;73971;73972;73973;73974;73975;73976;73977 73975 11 LFYLSGMVHGEYQNQEIHNLGR Oxidation (M) 2620.2493 0.24925519 1728 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 0 0 1 0 By matching By MS/MS 8 0 2 1 1 54.913 54.937 4 1.7941E-08 15637 20211116_3447_TMUAki_TMT10x_S_F8 101.05 91.77 2330500 4587600 16115 3865000 2787100 2463500 2518600 3467400 2977800 3129600 3274400 2170000 4278000 214630 3973000 2666600 2618600 2583000 3464600 3019800 3070400 3149500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2330500 4587600 16115 3865000 2787100 2463500 2518600 3467400 2977800 3129600 3274400 2170000 4278000 214630 3973000 2666600 2618600 2583000 3464600 3019800 3070400 3149500 2 2 2 2 2 2 2 2 2 2 2 272170000 152570000 119600000 11432 1728 10608 60918;60919 73978;73979 73979 2321 2 LFYSTFATDDRK Unmodified 1462.7092 0.70924429 865 P30084 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 56.143 56.189 3 2.3337E-12 16640 20211116_3436_TMUAki_TMT10x_P_F8 175.54 152.16 26830000 42961000 96579 46817000 31234000 34882000 27827000 21167000 20620000 21309000 29750000 24982000 40101000 2322200 47311000 29865000 35963000 28181000 22218000 21616000 20806000 28416000 3 3 2 3 3 3 3 3 3 3 3 19733000 31026000 79768 32819000 23051000 28532000 20921000 15519000 14798000 15359000 21302000 18374000 28957000 1702900 33290000 22050000 29039000 21143000 16430000 15553000 15007000 20348000 2 2 1 2 2 2 2 2 2 2 2 7096900 11935000 16812 13998000 8182700 6349800 6905900 5648300 5821800 5949900 8448000 6608000 11144000 619250 14020000 7814800 6924800 7038200 5787300 6063300 5798500 8068200 1 1 1 1 1 1 1 1 1 1 1 1414900000 627460000 787480000 11433 865 10609 60920;60921 73980;73981;73982 73980 3 LGAAPEEESAYVAGEK Unmodified 1619.7679 0.76788138 3203 Q9UNZ2;Q9UNZ2-5;Q9UNZ2-6 NSFL1C NSFL1 cofactor p47 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 51.316 51.076 3 6.5903E-11 16472 20211116_3430_TMUAki_TMT10x_P_F3 133.14 114.77 8225300 14842000 159030 15932000 16350000 18540000 12009000 10149000 12481000 9578300 12820000 7659600 13853000 927170 16215000 15577000 18538000 12423000 10725000 12689000 9378100 12356000 4 4 3 4 4 4 4 4 4 4 4 6344000 11389000 159030 12281000 14705000 17105000 10579000 7963200 9840000 7496900 9983800 5908100 10630000 791270 12537000 14006000 16923000 10924000 8543800 10048000 7341100 9626600 3 3 3 3 3 3 3 3 3 3 3 1881200 3452800 0 3651200 1645100 1435000 1429900 2185500 2641000 2081400 2836000 1751500 3222600 135890 3677700 1570900 1615400 1499100 2181100 2640600 2037100 2729800 1 1 0 1 1 1 1 1 1 1 1 672760000 524970000 147790000 11434 3203 10610 60922;60923;60924 73983;73984;73985;73986 73984 4 LGAAQSPFNDLNR Unmodified 1401.7001 0.70007659 2431 Q96D05;Q96D05-2 C10orf35 Uncharacterized protein C10orf35 yes no 0 0 0 0 By MS/MS 6 0 1 1 53.145 53.265 2 0.0018806 15146 20211116_3445_TMUAki_TMT10x_S_F6 70.321 43.648 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11435 2431 10611 60925 73987 73987 1 LGADAVGMSTVPEVIVAR Oxidation (M) 1799.9451 0.94513424 469 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 1 0 By MS/MS By MS/MS 5.14 0.639 1 4 2 4 3 61.874 61.993 2;3 2.3881E-11 18479 20211116_3444_TMUAki_TMT10x_S_F5 121.71 98.832 14045000 24543000 118770 22948000 18183000 24709000 15387000 21436000 20715000 19982000 21012000 13077000 22896000 958840 23549000 17366000 24989000 15918000 21916000 20851000 19575000 20260000 7 7 3 7 7 7 7 7 7 7 7 6892900 11540000 74233 11079000 9612000 17108000 8591200 10729000 10778000 9824500 10130000 6417900 10767000 608060 11425000 9190700 16914000 8835500 11204000 10846000 9632400 9792500 4 4 2 4 4 4 4 4 4 4 4 7151900 13003000 44535 11869000 8571000 7600200 6795400 10706000 9937300 10157000 10882000 6659400 12129000 350780 12125000 8175700 8075700 7083000 10712000 10006000 9942800 10468000 3 3 1 3 3 3 3 3 3 3 3 3314000000 1994700000 1319300000 11436 469 10612 60926;60927;60928;60929;60930;60931;60932 73988;73989;73990;73991;73992;73993;73994;73995;73996 73995 359 9 LGADAVGMSTVPEVIVAR Unmodified 1783.9502 0.95021962 469 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 71.119 71.115 2;3 2.2538E-70 22508 20211116_3445_TMUAki_TMT10x_S_F6 286.53 246.53 15024000 26272000 245900 24458000 18253000 21842000 18215000 15233000 12352000 15249000 18232000 13990000 24508000 1508300 25041000 17515000 22264000 18296000 15822000 13031000 14893000 17405000 6 6 5 6 6 6 6 6 6 6 6 7611100 12899000 142740 11986000 8789600 14996000 9811400 9095400 7815900 8785000 9754800 7087700 12032000 780540 12338000 8462200 14959000 9836900 9536100 8107500 8592600 9350000 3 3 3 3 3 3 3 3 3 3 3 7412800 13373000 103160 12472000 9463400 6845700 8403100 6137500 4536300 6464400 8476800 6902700 12475000 727800 12703000 9052800 7305100 8459400 6285700 4923900 6300000 8055200 3 3 2 3 3 3 3 3 3 3 3 1678400000 663690000 1014700000 11437 469 10612 60933;60934;60935 73997;73998;73999;74000;74001;74002 74001 6 LGAEVYHTLK Unmodified 1129.6132 0.61315906 568 P09104;P09104-2 ENO2 Gamma-enolase yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 46.925 47.453 3 2.567E-05 12417 20211116_3434_TMUAki_TMT10x_P_F6 99.53 69.763 1750400 2923300 27195 3324500 1582100 1496200 1689700 2044700 2010900 1878600 2389900 1630000 2729200 168110 3335900 1521400 1649300 1718300 2046300 2045200 1841600 2293700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1750400 2923300 27195 3324500 1582100 1496200 1689700 2044700 2010900 1878600 2389900 1630000 2729200 168110 3335900 1521400 1649300 1718300 2046300 2045200 1841600 2293700 1 1 1 1 1 1 1 1 1 1 1 395950000 225230000 170720000 11438 568 10613 60936;60937;60938 74003;74004 74003 2 LGAGPGDAGEVQAHPFFR Unmodified 1824.8907 0.89073091 784 P23443;P23443-2;P23443-4;P23443-3;P23443-5 RPS6KB1 Ribosomal protein S6 kinase beta-1 yes no 0 0 0 0 By matching By MS/MS 5.5 0.5 1 1 1 1 50.912 51.082 3 2.9481E-08 14294 20211116_3445_TMUAki_TMT10x_S_F6 108.96 92.296 2281200 4490200 22392 4946700 1917500 2465500 2041700 3502300 3942300 3629500 3884800 2124200 4191600 204900 4977100 1843000 2688100 2123300 3512400 3925400 3539500 3749300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2281200 4490200 22392 4946700 1917500 2465500 2041700 3502300 3942300 3629500 3884800 2124200 4191600 204900 4977100 1843000 2688100 2123300 3512400 3925400 3539500 3749300 1 1 1 1 1 1 1 1 1 1 1 374950000 163630000 211320000 11439 784 10614 60939;60940 74005 74005 1 LGAGYPMGPFELLDYVGLDTTK Oxidation (M) 2372.161 0.16100026 1866 Q16836;Q16836-3;Q16836-2 HADH Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 6.29 1.39 1 1 2 1 2 3 4 81.776 81.784 3 2.6048E-14 27107 20211116_3436_TMUAki_TMT10x_P_F8 129.12 113.86 7517800 12195000 50587 10971000 8588200 12896000 9372800 9329100 9442800 9962500 9868300 6999600 11375000 614570 11307000 8253000 12938000 9468400 9684200 9618400 9703800 9506400 9 9 2 9 9 9 9 9 9 9 9 4214800 6568500 26078 6209100 4066000 8030400 4590700 5238100 5252400 5576800 5385200 3924200 6127800 324080 6386900 3910300 8005700 4649600 5476800 5319200 5432600 5190800 5 5 1 5 5 5 5 5 5 5 5 3303000 5626600 24509 4761600 4522200 4865400 4782100 4091000 4190400 4385800 4483000 3075400 5247000 290490 4920300 4342600 4932700 4818800 4207300 4299300 4271200 4315600 4 4 1 4 4 4 4 4 4 4 4 1839100000 640600000 1198500000 11440 1866 10615 60941;60942;60943;60944;60945;60946;60947 74006;74007;74008;74009;74010;74011;74012;74013;74014 74010 2482 9 LGALGGAR Unmodified 713.41842 0.41842242 2568 Q96TC7 RMDN3 Regulator of microtubule dynamics protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 35.338 35.766 2 0.0042008 8299 20211116_3436_TMUAki_TMT10x_P_F8 98.807 35.413 657890 1082800 14834 1040300 917330 956650 747390 597120 656670 616990 857690 612670 1010200 72002 1063000 876210 971650 764190 625850 679150 601770 821160 2 2 2 2 2 2 2 2 2 2 2 325760 538030 13270 529540 594490 669380 407380 321220 346810 325990 441810 303410 502000 43138 542900 566130 665470 421130 344310 358840 318180 423260 1 1 1 1 1 1 1 1 1 1 1 332130 544740 1564.3 510770 322840 287270 340010 275900 309860 291000 415880 309260 508170 28864 520120 310080 306180 343050 281540 320310 283590 397900 1 1 1 1 1 1 1 1 1 1 1 14851000 10267000 4584200 11441 2568 10616 60948;60949;60950 74015;74016 74015 2 LGANSLLDLVVFGR Unmodified 1472.8351 0.83511351 882 P31040;P31040-3;P31040-2 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 3.75 0.433 1 3 1 3 81.549 81.54 2;3 1.3325E-13 27711 20211116_3442_TMUAki_TMT10x_S_F4 147.55 112.25 4703900 7420400 31701 6986700 4553700 5576100 5302200 2744200 3824600 4601200 5539500 4379900 6922400 398590 7137100 4385800 5703900 5293400 2988700 4016400 4417300 5290700 3 3 2 3 3 3 3 3 3 3 3 247940 683400 2286.8 499860 250730 467610 274370 258900 243390 229120 347150 230880 637000 22726 522420 241140 473660 276110 272870 252640 225000 331670 1 1 1 1 1 1 1 1 1 1 1 4456000 6737000 29415 6486900 4302900 5108500 5027800 2485300 3581200 4372100 5192400 4149000 6285400 375860 6614700 4144600 5230300 5017300 2715800 3763800 4192300 4959000 2 2 1 2 2 2 2 2 2 2 2 453030000 101540000 351490000 11442 882 10617 60951;60952;60953;60954 74017;74018;74019 74019 3 LGAPALTSR Unmodified 884.50797 0.50796571 915 P34897;P34897-3;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.43 2.87 2 1 2 2 3 4 37.956 38.226 2 0.00012967 9867 20211116_3446_TMUAki_TMT10x_S_F7 138.55 95.549 5412600 9057900 48867 9418400 8797700 7961800 5700700 7731100 7968500 6856500 8473300 5040000 8453300 532860 9561000 8360200 8195700 6014600 7845900 8025200 6732400 8158200 8 8 5 8 8 8 8 8 8 8 8 1691200 2792300 36125 2728500 4484000 4567200 1931800 2723000 2899400 2303900 2705100 1575000 2605300 213000 2815600 4237500 4497900 2122900 2849100 2900400 2267400 2615500 2 2 2 2 2 2 2 2 2 2 2 3721400 6265500 12742 6689800 4313700 3394700 3768900 5008100 5069100 4552600 5768100 3465000 5848000 319870 6745500 4122700 3697800 3891700 4996900 5124800 4465100 5542700 6 6 3 6 6 6 6 6 6 6 6 495780000 264940000 230840000 11443 915 10618 60955;60956;60957;60958;60959;60960;60961 74020;74021;74022;74023;74024;74025;74026;74027 74025 8 LGAPQTHLGLK Unmodified 1133.6557 0.65569258 2421 Q96C19;Q9BUP0;Q9BUP0-2 EFHD2;EFHD1 EF-hand domain-containing protein D2;EF-hand domain-containing protein D1 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 42.906 42.807 3 0.0012145 13137 20211116_3439_TMUAki_TMT10x_S_F1 77.124 59.956 2056700 3296100 10370 3657200 3850500 3792100 2542200 2911400 3108400 2543100 2934600 1915000 3076900 193150 3707400 3658900 3835000 2664600 2993500 3131300 2498900 2836300 2 2 1 2 2 2 2 2 2 2 2 1291500 1848100 0 2206400 3102500 3154600 1766000 1807900 1819000 1546300 1693300 1202400 1725800 120290 2239800 2940500 3125000 1862900 1898300 1843800 1521000 1637400 1 1 0 1 1 1 1 1 1 1 1 765210 1448000 10370 1450700 747910 637480 776150 1103500 1289300 996730 1241300 712570 1351200 72863 1467600 718460 710060 801690 1095300 1287500 977860 1198900 1 1 1 1 1 1 1 1 1 1 1 139980000 103620000 36366000 11444 2421 10619 60962;60963 74028;74029 74029 2 LGAQALLGAAK Unmodified 1011.6077 0.60767975 902 P32322;P32322-2;P32322-3 PYCR1 Pyrroline-5-carboxylate reductase 1, mitochondrial yes no 0 0 0 0 By MS/MS 2 0 1 1 58.801 58.544 2 4.1148E-09 19108 20211116_3429_TMUAki_TMT10x_P_F2 159.37 129.8 4125600 6957000 33629 6375100 6832300 9432900 4894100 6196600 6326700 5379600 6204300 3841600 6489400 411290 6590500 6504400 9348200 5110000 6439200 6369300 5287600 5988800 1 1 1 1 1 1 1 1 1 1 1 4125600 6957000 33629 6375100 6832300 9432900 4894100 6196600 6326700 5379600 6204300 3841600 6489400 411290 6590500 6504400 9348200 5110000 6439200 6369300 5287600 5988800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 284900000 284900000 0 11445 902 10620 60964 74030 74030 1 LGATIDVEHSHVR Unmodified 1432.7423 0.74227576 1955 Q7L523;Q5VZM2-2 RRAGA Ras-related GTP-binding protein A yes no 0 0 0 0 By MS/MS 4 0 1 1 33.856 33.88 4 0.0020284 7939 20211116_3431_TMUAki_TMT10x_P_F4 67.519 43.265 990050 1616600 79954 1499500 1597100 2136700 1106600 1445100 1425900 1438400 1456900 922430 1508000 165100 1547600 1523900 2121900 1158000 1504000 1437700 1405000 1404500 1 1 1 1 1 1 1 1 1 1 1 990050 1616600 79954 1499500 1597100 2136700 1106600 1445100 1425900 1438400 1456900 922430 1508000 165100 1547600 1523900 2121900 1158000 1504000 1437700 1405000 1404500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 68508000 68508000 0 11446 1955 10621 60965 74031 74031 1 LGAVFNQVAFPLQYTPR Unmodified 1920.0258 0.025767826 1798 Q15393 SF3B3 Splicing factor 3B subunit 3 yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 0.667 1 4 4 5 4 79.323 79.325 2;3 4.7514E-47 25473 20211116_3434_TMUAki_TMT10x_P_F6 248.36 208.45 36420000 54393000 251570 49837000 35269000 47535000 40546000 30026000 32363000 35997000 41377000 33912000 50738000 2252200 51129000 33965000 48174000 40599000 31591000 33602000 34910000 39636000 8 8 5 8 8 8 8 8 8 8 8 14704000 21606000 1085.8 20005000 12809000 25212000 15078000 12005000 12995000 14685000 17330000 13691000 20154000 715850 20599000 12338000 25067000 15111000 12952000 13466000 14232000 16584000 3 3 1 3 3 3 3 3 3 3 3 21716000 32788000 250480 29832000 22460000 22323000 25469000 18021000 19367000 21312000 24047000 20221000 30583000 1536300 30530000 21627000 23108000 25488000 18639000 20136000 20679000 23052000 5 5 4 5 5 5 5 5 5 5 5 13109000000 5534900000 7573900000 11447 1798 10622 60966;60967;60968;60969;60970;60971;60972;60973;60974 74032;74033;74034;74035;74036;74037;74038;74039 74034 8 LGCFNLTIK Unmodified 1064.5689 0.56885141 1645 Q13547 HDAC1 Histone deacetylase 1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 68.388 67.931 2 0.00038805 24493 20211116_3441_TMUAki_TMT10x_S_F3 125.16 61.681 2909000 5617600 90066 5162500 3847600 2983100 3053800 3367800 2759700 3583800 3941700 2709200 5240100 338260 5266100 3674800 3182100 3130000 3411200 2862300 3491200 3765800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2909000 5617600 90066 5162500 3847600 2983100 3053800 3367800 2759700 3583800 3941700 2709200 5240100 338260 5266100 3674800 3182100 3130000 3411200 2862300 3491200 3765800 1 1 1 1 1 1 1 1 1 1 1 368950000 0 368950000 11448 1645 10623 60975 74040 74040 1 LGCFNLTVK Unmodified 1050.5532 0.55320134 2362 Q92769;Q92769-3 HDAC2 Histone deacetylase 2 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 64.093 63.765 2 3.2107E-05 21717 20211116_3430_TMUAki_TMT10x_P_F3 115.71 43.167 24676000 39407000 54132 45555000 28214000 24171000 20613000 20468000 16343000 17145000 25247000 22976000 36794000 2040600 45720000 26858000 25860000 21174000 20898000 17129000 16882000 24079000 3 3 2 3 3 3 3 3 3 3 3 6458100 10666000 16188 11283000 10206000 12545000 6946600 5895900 4870600 5328300 7214700 6013300 9954800 603010 11486000 9705300 12552000 7152500 6313100 5129000 5227300 6887200 1 1 1 1 1 1 1 1 1 1 1 18218000 28741000 37944 34272000 18008000 11627000 13666000 14572000 11473000 11817000 18032000 16962000 26839000 1437600 34234000 17153000 13307000 14021000 14585000 12000000 11655000 17192000 2 2 1 2 2 2 2 2 2 2 2 1655900000 674450000 981440000 11449 2362 10624 60976;60977;60978;60979 74041;74042;74043;74044 74042 4 LGCHPQTGFADIQGHPFFR Unmodified 2184.0323 0.032326541 1004 P41743 PRKCI Protein kinase C iota type yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 3 1 2 52.455 52.245 3;4 6.5981E-51 15236 20211116_3440_TMUAki_TMT10x_S_F2 231.77 220.16 10286000 17643000 49412 18371000 15033000 15638000 12489000 14500000 12689000 12412000 14389000 9577600 16465000 922940 18649000 14351000 16074000 12808000 14737000 12960000 12209000 13828000 4 4 3 4 4 4 4 4 4 4 4 4954300 8567700 4146.7 8608500 9014800 10836000 7420500 7105600 5869100 6001400 7038700 4612700 7994800 429080 8812500 8601200 10817000 7562200 7379700 6080200 5906700 6753800 2 2 1 2 2 2 2 2 2 2 2 5332000 9074900 45265 9762800 6018500 4802300 5068800 7394200 6819400 6411000 7349900 4964900 8470400 493860 9836900 5749700 5256500 5245300 7357700 6879800 6301800 7073800 2 2 2 2 2 2 2 2 2 2 2 1885300000 1123700000 761600000 11450 1004 10625 60980;60981;60982 74045;74046;74047;74048;74049 74047 5 LGDDIDLIVR Unmodified 1127.6186 0.61863837 185 O15371;O15371-2;O15371-3 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 0 0 0 0 By MS/MS By MS/MS 2.33 0.943 1 2 1 2 69.092 68.903 2 0.00072981 24826 20211116_3441_TMUAki_TMT10x_S_F3 85.377 54.807 4353700 7611500 50490 6997400 12586000 4107600 4597800 10775000 5846600 5667600 7503300 4054100 7100100 523300 7138700 11870000 4512600 5120100 10466000 5952000 5745700 7186900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4353700 7611500 50490 6997400 12586000 4107600 4597800 10775000 5846600 5667600 7503300 4054100 7100100 523300 7138700 11870000 4512600 5120100 10466000 5952000 5745700 7186900 1 1 1 1 1 1 1 1 1 1 1 319510000 0 319510000 11451 185 10626 60983;60984;60985 74050;74051;74052 74052 3 LGDFPYVSILDPR Unmodified 1490.7769 0.77692993 391 O94888 UBXN7 UBX domain-containing protein 7 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.707 1 2 1 3 1 79.481 79.5 2 7.1539E-12 28046 20211116_3446_TMUAki_TMT10x_S_F7 156.48 114.37 14314000 23392000 60311 20961000 16567000 20750000 17081000 12306000 11615000 13847000 16680000 13327000 21819000 1099500 21552000 15891000 20962000 17130000 12984000 12236000 13460000 15934000 3 3 1 3 3 3 3 3 3 3 3 7438200 11782000 60311 10607000 6529600 12571000 8533600 6184400 6017000 6816700 7967300 6925400 10990000 562520 10933000 6308600 12542000 8473400 6629100 6300600 6631500 7625400 2 2 1 2 2 2 2 2 2 2 2 6875600 11610000 0 10354000 10038000 8178800 8547300 6121200 5598400 7030100 8712400 6401300 10829000 537020 10619000 9582200 8419900 8656500 6354700 5935000 6828500 8308200 1 1 0 1 1 1 1 1 1 1 1 3319700000 1811300000 1508400000 11452 391 10627 60986;60987;60988;60989 74053;74054;74055;74056 74056 4 LGDPLEAFPVFK Unmodified 1331.7125 0.71253876 2110 Q86UY6;Q86UY6-3 NAA40 N-alpha-acetyltransferase 40 yes no 0 0 0 0 By MS/MS By MS/MS 7.17 0.687 1 3 2 3 3 79.625 79.635 2;3 4.5171E-15 27684 20211116_3435_TMUAki_TMT10x_P_F7 188.04 153.15 11396000 20300000 285050 19343000 11906000 17749000 14265000 10561000 10197000 11917000 14297000 10613000 18939000 1217600 19776000 11492000 18018000 14220000 11141000 10697000 11583000 13665000 3 3 3 3 3 3 3 3 3 3 3 8003300 14161000 167960 12887000 7367500 13766000 9052500 7208800 7225000 8347300 9783000 7453100 13209000 811150 13250000 7116800 13822000 9037600 7694400 7520900 8105500 9358100 2 2 2 2 2 2 2 2 2 2 2 3392400 6139300 117090 6455400 4538400 3983000 5212500 3351700 2972200 3569500 4514100 3159500 5729800 406430 6526300 4375700 4196000 5182700 3446200 3176500 3477200 4306800 1 1 1 1 1 1 1 1 1 1 1 2890000000 1551100000 1338900000 11453 2110 10628 60990;60991;60992;60993;60994;60995 74057;74058;74059 74058 3 LGDSMANYPQGLDDK Oxidation (M) 1638.7196 0.71955098 2889 Q9NPD7 NRN1 Neuritin yes yes 0 0 1 0 By MS/MS 2 0 1 1 76.817 76.742 2 0.045272 26426 20211116_3429_TMUAki_TMT10x_P_F2 51.268 7.9856 5379200 8914700 0 8255100 3364500 5665200 4006300 2350900 2340400 2864500 5230400 5007200 8315900 239260 8429400 3230600 5856600 3978700 2572900 2556400 2776500 4956100 1 1 0 1 1 1 1 1 1 1 1 5379200 8914700 0 8255100 3364500 5665200 4006300 2350900 2340400 2864500 5230400 5007200 8315900 239260 8429400 3230600 5856600 3978700 2572900 2556400 2776500 4956100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 709820000 709820000 0 11454 2889 10629 60996 74060 74060 3005 1 LGDVISIQPCPDVK Unmodified 1539.7967 0.79667909 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 By MS/MS By MS/MS 5.85 0.948 1 4 4 4 7 6 66.988 67.131 2;3 2.7257E-29 20448 20211116_3434_TMUAki_TMT10x_P_F6 206.36 177.28 88777000 147900000 889100 155340000 118040000 152570000 104730000 107530000 97391000 105140000 114180000 82663000 138030000 8174000 157900000 112880000 154590000 106700000 111530000 99996000 102780000 109630000 17 17 9 17 17 17 17 17 17 17 17 57466000 95657000 576120 100020000 84477000 124200000 76013000 68996000 62649000 67719000 73583000 53509000 89274000 5425800 102090000 80806000 123800000 77132000 72898000 64707000 66190000 70644000 10 10 6 10 10 10 10 10 10 10 10 31310000 52240000 312980 55312000 33565000 28368000 28716000 38532000 34742000 37418000 40597000 29154000 48757000 2748300 55808000 32069000 30790000 29568000 38630000 35288000 36590000 38981000 7 7 3 7 7 7 7 7 7 7 7 17082000000 9732700000 7349300000 11455 1235 10630 60997;60998;60999;61000;61001;61002;61003;61004;61005;61006;61007;61008;61009 74061;74062;74063;74064;74065;74066;74067;74068;74069;74070;74071;74072;74073;74074;74075;74076;74077;74078 74068 18 LGDVSPTQIDVSQFGSFKEDTK Unmodified 2397.17 0.16998504 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 1 By MS/MS 6.17 0.687 1 3 2 6 72.443 72.585 3;4 1.8406E-17 22660 20211116_3434_TMUAki_TMT10x_P_F6 135.54 128.42 16538000 27789000 232750 25865000 16993000 28527000 17569000 15175000 16359000 16219000 19226000 15400000 25923000 1594400 26562000 16322000 28597000 17753000 16134000 16797000 15797000 18458000 3 3 3 3 3 3 3 3 3 3 3 16538000 27789000 232750 25865000 16993000 28527000 17569000 15175000 16359000 16219000 19226000 15400000 25923000 1594400 26562000 16322000 28597000 17753000 16134000 16797000 15797000 18458000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1854600000 1854600000 0 11456 1057 10631 61010;61011;61012;61013;61014;61015 74079;74080;74081;74082;74083;74084;74085 74081 7 LGDVYVNDAFGTAHR Unmodified 1633.7849 0.78486885 473 P00558;P00558-2;P07205 PGK1;PGK2 Phosphoglycerate kinase 1;Phosphoglycerate kinase 2 yes no 0 0 0 0 By MS/MS By MS/MS 4.89 1.86 1 1 2 4 4 3 2 2 11 8 53.139 53.242 2;3 3.3903E-116 14842 20211116_3444_TMUAki_TMT10x_S_F5 377.21 341.67 66930000 104440000 387060 118900000 98667000 111620000 73699000 88444000 86484000 80442000 87332000 62317000 97506000 5315900 120170000 93971000 113640000 76458000 90854000 87453000 78893000 84219000 20 20 9 20 20 20 20 20 20 20 20 42328000 63592000 215510 72590000 74124000 89854000 52625000 55101000 53586000 49588000 54093000 39411000 59372000 3310300 73676000 70528000 89691000 54534000 57612000 54490000 48657000 52166000 12 12 7 12 12 12 12 12 12 12 12 24602000 40846000 171550 46315000 24543000 21765000 21074000 33343000 32898000 30854000 33238000 22906000 38134000 2005700 46495000 23443000 23947000 21924000 33242000 32963000 30236000 32053000 8 8 2 8 8 8 8 8 8 8 8 47579000000 26748000000 20831000000 11457 473 10632 61016;61017;61018;61019;61020;61021;61022;61023;61024;61025;61026;61027;61028;61029;61030;61031;61032;61033;61034 74086;74087;74088;74089;74090;74091;74092;74093;74094;74095;74096;74097;74098;74099;74100;74101;74102;74103;74104;74105 74102 20 LGEEAFFYHSNCK Unmodified 1600.698 0.69802768 3045 Q9P016;Q9P016-2 THYN1 Thymocyte nuclear protein 1 yes no 0 0 0 0 By MS/MS 6 0 1 1 52.231 52.332 3 0.08675 14398 20211116_3434_TMUAki_TMT10x_P_F6 36.631 31.352 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11458 3045 10633 61035 74106 74106 1 LGEEAFFYHSNCKEPGIAGLMK Oxidation (M) 2513.1719 0.17191607 3045 Q9P016;Q9P016-2 THYN1 Thymocyte nuclear protein 1 yes no 0 0 1 1 By MS/MS By matching 7.5 0.5 1 1 1 1 60.503 60.867 4 1.385E-05 19711 20211116_3435_TMUAki_TMT10x_P_F7 80.156 66.284 2857800 5682400 75308 4503500 4796500 8863200 4570600 5601700 5752800 5668000 4570700 2661500 5297900 334270 4742800 4598000 8687000 4684600 5862000 5758900 5532900 4445700 1 1 1 1 1 1 1 1 1 1 1 2857800 5682400 75308 4503500 4796500 8863200 4570600 5601700 5752800 5668000 4570700 2661500 5297900 334270 4742800 4598000 8687000 4684600 5862000 5758900 5532900 4445700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1677000000 1095200000 581760000 11459 3045 10634 61036;61037 74107 74107 3091 1 LGEFFQTK Unmodified 968.49673 0.49673232 1757 Q15029;Q15029-2;Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 By MS/MS 7 0 1 1 63.741 64.384 2 0.0078738 21202 20211116_3435_TMUAki_TMT10x_P_F7 88.177 59.959 10169000 14974000 0 16974000 19880000 24942000 13692000 14959000 15711000 13857000 14269000 9466400 13980000 796530 17295000 18895000 24693000 14275000 15680000 15844000 13579000 13810000 1 1 0 1 1 1 1 1 1 1 1 10169000 14974000 0 16974000 19880000 24942000 13692000 14959000 15711000 13857000 14269000 9466400 13980000 796530 17295000 18895000 24693000 14275000 15680000 15844000 13579000 13810000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 779890000 779890000 0 11460 1757 10635 61038 74108 74108 1 LGEHNIDVLEGNEQFINAAK Unmodified 2210.0968 0.096760517 33 CON__P00761 yes yes 0 0 0 0 By MS/MS By MS/MS 4.69 1.31 1 2 4 4 4 1 9 7 64.243 64.234 3;4 1.4096E-64 19643 20211116_3445_TMUAki_TMT10x_S_F6 269.59 249.54 + 92756000 165360000 1081800 164090000 136750000 167010000 111590000 126090000 125290000 118260000 133370000 86365000 154290000 8298900 167530000 130490000 169040000 114930000 130030000 127150000 115820000 128410000 26 26 17 26 26 26 26 26 26 26 26 47143000 82156000 668920 79103000 80434000 124470000 70880000 66666000 63682000 60580000 68297000 43894000 76649000 4280000 81592000 76878000 122710000 72174000 70517000 65265000 59417000 65740000 15 15 9 15 15 15 15 15 15 15 15 45613000 83199000 412860 84988000 56315000 42533000 40713000 59422000 61611000 57679000 65074000 42471000 77640000 4018800 85940000 53611000 46328000 42760000 59512000 61887000 56404000 62667000 11 11 8 11 11 11 11 11 11 11 11 24987000000 14097000000 10889000000 11461 33 10636 61039;61040;61041;61042;61043;61044;61045;61046;61047;61048;61049;61050;61051;61052;61053;61054 74109;74110;74111;74112;74113;74114;74115;74116;74117;74118;74119;74120;74121;74122;74123;74124;74125;74126;74127;74128;74129;74130;74131;74132;74133;74134 74132 26 LGEINVIGEPFLNVNCEHIK Unmodified 2294.1729 0.17290235 911 P33991 MCM4 DNA replication licensing factor MCM4 yes yes 0 0 0 0 By MS/MS By MS/MS 5.53 1.42 2 2 4 4 4 1 9 8 76.329 76.337 3;4 1.7831E-24 26645 20211116_3446_TMUAki_TMT10x_S_F7 165.06 147.57 106190000 179520000 1014100 170480000 120280000 147720000 119230000 91769000 87267000 96959000 125180000 98873000 167480000 9083800 174210000 115310000 150630000 120010000 96283000 91524000 94481000 119590000 22 22 14 22 22 22 22 22 22 22 22 55362000 88988000 460160 85816000 50750000 92714000 57273000 47763000 44859000 49684000 63906000 51547000 83023000 4472600 87873000 48822000 93016000 57369000 50889000 46855000 48445000 61058000 13 13 8 13 13 13 13 13 13 13 13 50827000 90530000 553970 84663000 69533000 55003000 61960000 44005000 42408000 47275000 61277000 47326000 84452000 4611200 86341000 66490000 57616000 62639000 45394000 44668000 46036000 58528000 9 9 6 9 9 9 9 9 9 9 9 25245000000 12915000000 12330000000 11462 911 10637 61055;61056;61057;61058;61059;61060;61061;61062;61063;61064;61065;61066;61067;61068;61069;61070;61071 74135;74136;74137;74138;74139;74140;74141;74142;74143;74144;74145;74146;74147;74148;74149;74150;74151;74152;74153;74154;74155;74156;74157 74154 23 LGEIVTTIPTIGFNVETVEYK Unmodified 2322.2359 0.23587976 1301;1453;715 P84085;P61204;P84077;P18085 ARF5;ARF3;ARF1;ARF4 ADP-ribosylation factor 5;ADP-ribosylation factor 3;ADP-ribosylation factor 1;ADP-ribosylation factor 4 no no 0 0 0 0 By MS/MS 4 0 1 1 80.481 80.489 3 8.372E-05 26915 20211116_3431_TMUAki_TMT10x_P_F4 63.447 52.008 2054500 2838300 45529 3614300 1876600 3252900 2235900 1818600 1735700 1777900 2241700 1913300 2651300 210270 3627000 1811100 3303900 2233700 1920200 1805600 1738100 2146800 1 1 1 1 1 1 1 1 1 1 1 2054500 2838300 45529 3614300 1876600 3252900 2235900 1818600 1735700 1777900 2241700 1913300 2651300 210270 3627000 1811100 3303900 2233700 1920200 1805600 1738100 2146800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 546320000 546320000 0 11463 1453;1301;715 10638 61072 74158 74158 1 LGELLFPSSLAGETLGSFSGLR Unmodified 2250.1896 0.18959827 941 P35658;P35658-3;P35658-4;P35658-2;P35658-5 NUP214 Nuclear pore complex protein Nup214 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 82.042 82.018 3 1.7002E-36 28588 20211116_3429_TMUAki_TMT10x_P_F2 198.49 182.54 2491800 4333000 3590.2 4289100 2818500 3837000 3081100 2327900 2444800 2799200 3465400 2320000 4043000 136030 4371900 2708500 3902800 3091800 2457200 2551200 2714400 3311400 4 4 1 4 4 4 4 4 4 4 4 1258800 2220100 3590.2 2306900 1276600 2280500 1575000 1216100 1240700 1494600 1831300 1172000 2072000 96685 2346900 1231100 2300900 1571600 1298500 1297800 1448200 1748300 2 2 1 2 2 2 2 2 2 2 2 1233000 2112800 0 1982200 1541900 1556500 1506100 1111900 1204100 1304600 1634100 1148000 1971000 39347 2025000 1477400 1601900 1520200 1158700 1253400 1266200 1563100 2 2 0 2 2 2 2 2 2 2 2 872440000 418110000 454330000 11464 941 10639 61073;61074;61075;61076 74159;74160;74161;74162 74159 4 LGELPSWILMR Oxidation (M) 1329.7115 0.7114929 1251 P56134;P56134-3;P56134-4;P56134-2 ATP5J2 ATP synthase subunit f, mitochondrial yes no 0 0 1 0 By MS/MS 2 0 1 1 78.476 78.446 2 0.053448 27119 20211116_3429_TMUAki_TMT10x_P_F2 57.59 14.113 5638000 9140600 119420 8453500 5416900 9359700 6677100 4835800 3744800 4775900 6213900 5250400 8526600 575630 8686000 5232900 9377500 6616200 5143200 4025600 4666900 5917900 1 1 1 1 1 1 1 1 1 1 1 5638000 9140600 119420 8453500 5416900 9359700 6677100 4835800 3744800 4775900 6213900 5250400 8526600 575630 8686000 5232900 9377500 6616200 5143200 4025600 4666900 5917900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 721160000 721160000 0 11465 1251 10640 61077 74163 74163 1700 1 LGEMWNNTAADDKQPYEK Oxidation (M) 2124.9422 0.94223371 574 P09429 HMGB1 High mobility group protein B1 yes yes 0 0 1 1 By MS/MS By matching 4.67 0.471 1 2 2 1 49.336 49.509 3;4 0.00013935 14195 20211116_3431_TMUAki_TMT10x_P_F4 75.589 51.789 3111300 5496900 68317 7288200 12498000 8496100 7114200 2799400 3065200 3088600 4959900 2897500 5135800 453090 7326700 11853000 8452700 7372400 3142400 3362800 3004600 4726000 2 2 2 2 2 2 2 2 2 2 2 3111300 5496900 68317 7288200 12498000 8496100 7114200 2799400 3065200 3088600 4959900 2897500 5135800 453090 7326700 11853000 8452700 7372400 3142400 3362800 3004600 4726000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 877330000 603300000 274030000 11466 574 10641 61078;61079;61080 74164;74165 74164 546 2 LGEMWNNTAADDKQPYEKK Oxidation (M) 2253.0372 0.037196727 574 P09429 HMGB1 High mobility group protein B1 yes yes 0 0 1 2 By MS/MS 6 0 1 1 45.673 45.748 4 5.0555E-06 11793 20211116_3434_TMUAki_TMT10x_P_F6 86.44 57.627 3018100 4673500 6059.3 6867800 18391000 10023000 8884600 2498200 3000600 2281900 5474500 2810100 4369100 459510 6898500 17394000 9847000 9327000 2913300 3397900 2237500 5204500 2 2 1 2 2 2 2 2 2 2 2 3018100 4673500 6059.3 6867800 18391000 10023000 8884600 2498200 3000600 2281900 5474500 2810100 4369100 459510 6898500 17394000 9847000 9327000 2913300 3397900 2237500 5204500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 275840000 275840000 0 11467 574 10642 61081 74166;74167 74167 546 2 LGEQGGDFGYGGYLFPGYGVGK Unmodified 2237.0429 0.042934032 7 A1L020 MEX3A RNA-binding protein MEX3A yes yes 0 0 0 0 By MS/MS 8 0 1 1 78.661 78.632 3 0.055959 25285 20211116_3447_TMUAki_TMT10x_S_F8 33.79 23.003 2711900 4323800 0 4088300 3799700 2947200 3492000 2739500 2390600 2560700 3459000 2525000 4033700 238440 4170300 3635500 3068100 3524000 2790500 2518100 2508300 3303700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2711900 4323800 0 4088300 3799700 2947200 3492000 2739500 2390600 2560700 3459000 2525000 4033700 238440 4170300 3635500 3068100 3524000 2790500 2518100 2508300 3303700 1 1 0 1 1 1 1 1 1 1 1 696100000 0 696100000 11468 7 10643 61082 74168 74168 1 LGESQTLQQFSR Unmodified 1392.6997 0.69974224 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 47.906 48.047 2 3.6298E-19 13030 20211116_3445_TMUAki_TMT10x_S_F6 219.33 164.92 2597700 4446800 35082 5503100 4216800 4455300 2809200 4491700 4785300 3512900 4042000 2418800 4153300 244970 5523800 4008300 4604300 2984300 4535800 4755400 3471200 3922200 2 2 1 2 2 2 2 2 2 2 2 1277500 2194500 35082 2655500 3304200 3511700 2014500 2298200 2249200 1641500 1925400 1189800 2049500 167000 2689300 3137900 3497400 2118100 2378200 2266400 1630200 1867400 1 1 1 1 1 1 1 1 1 1 1 1320100 2252200 0 2847600 912610 943690 794670 2193600 2536100 1871400 2116600 1229000 2103800 77971 2834500 870410 1106900 866150 2157600 2489000 1841000 2054800 1 1 0 1 1 1 1 1 1 1 1 538470000 399920000 138540000 11469 1663 10644 61083;61084;61085 74169;74170 74170 2 LGETYKDHENIVIAK Unmodified 1728.9046 0.90464964 533 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 1 By MS/MS By MS/MS 5.57 0.904 1 2 3 1 4 3 45.995 46.191 3;4 3.4541E-15 11934 20211116_3434_TMUAki_TMT10x_P_F6 143.38 106.22 44670000 75314000 321580 70989000 79910000 78120000 54244000 63494000 67581000 57335000 66725000 41593000 70260000 4359000 72832000 75987000 78815000 56777000 65110000 68138000 56250000 64394000 11 11 7 11 11 11 11 11 11 11 11 22160000 36462000 222660 33479000 52466000 53245000 29724000 29241000 31379000 26402000 30423000 20634000 34012000 2372600 34660000 49742000 52484000 31391000 30856000 31816000 25902000 29378000 5 5 4 5 5 5 5 5 5 5 5 22510000 38852000 98918 37510000 27444000 24874000 24520000 34253000 36202000 30933000 36302000 20960000 36248000 1986400 38172000 26244000 26331000 25386000 34254000 36322000 30348000 35016000 6 6 3 6 6 6 6 6 6 6 6 4221200000 2513000000 1708200000 11470 533 10645 61086;61087;61088;61089;61090;61091;61092 74171;74172;74173;74174;74175;74176;74177;74178;74179;74180;74181;74182 74176 12 LGEVALLQGNHQIVEMCYQR Oxidation (M) 2373.1569 0.15693471 1207 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 1 0 By MS/MS By MS/MS 6 0 2 1 1 57.982 58.04 3 7.6062E-07 16739 20211116_3434_TMUAki_TMT10x_P_F6 91.64 86.639 4781800 8123000 139400 7884800 6305200 10366000 5779200 7915900 6945500 7325700 6836600 4453400 7578700 547700 8097700 6040900 10352000 5925700 8154300 7011000 7178900 6598400 3 3 3 3 3 3 3 3 3 3 3 3414800 5576700 109250 5587700 4618800 8616400 4366200 5527000 4819200 5051400 4873000 3180300 5203700 401790 5744900 4429000 8521600 4456100 5761200 4884800 4953100 4699100 2 2 2 2 2 2 2 2 2 2 2 1367000 2546300 30157 2297100 1686400 1749500 1413000 2388800 2126400 2274200 1963600 1273000 2375000 145910 2352800 1611900 1830500 1469600 2393100 2126200 2225800 1899300 1 1 1 1 1 1 1 1 1 1 1 1367200000 733780000 633430000 11471 1207 10646 61093;61094 74183;74184;74185 74183 1620 3 LGEVSVESENYVQAVEEFQSCLNLQEQYLEAHDR Unmodified 4011.8433 0.84325453 1091 P49321;P49321-3;P49321-4;P49321-2 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 0 By MS/MS 1 0 1 1 80.609 80.609 4 0.0012612 26546 20211116_3428_TMUAki_TMT10x_P_F1 52.722 46.881 2013100 3451100 0 3059700 1863400 3234600 2210400 1539500 1575900 2085700 2621800 1874000 3218800 114490 3151600 1792200 3246400 2204300 1667200 1668100 2014500 2496800 1 1 0 1 1 1 1 1 1 1 1 2013100 3451100 0 3059700 1863400 3234600 2210400 1539500 1575900 2085700 2621800 1874000 3218800 114490 3151600 1792200 3246400 2204300 1667200 1668100 2014500 2496800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 896250000 896250000 0 11472 1091 10647 61095 74186 74186 1 LGEVVNTHGPVEPDKDNIR Unmodified 2088.06 0.05998108 872 P30419;P30419-2 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 43.142 43.277 4 5.8585E-12 12020 20211116_3442_TMUAki_TMT10x_S_F4 121.82 107.05 9837200 15737000 286380 18633000 25400000 21833000 13439000 16010000 19912000 13860000 15943000 9161300 14696000 1268800 18852000 24069000 21913000 14458000 16508000 19833000 13625000 15503000 5 5 3 5 5 5 5 5 5 5 5 7145700 11493000 221310 13161000 23211000 19607000 11161000 12324000 15396000 10430000 11958000 6655000 10730000 1020100 13405000 21966000 19413000 12082000 12841000 15356000 10265000 11642000 3 3 2 3 3 3 3 3 3 3 3 2691500 4244400 65065 5471700 2189100 2225600 2278200 3686400 4515600 3429300 3985300 2506300 3965000 248730 5446800 2103400 2500300 2375500 3666600 4477100 3359900 3860900 2 2 1 2 2 2 2 2 2 2 2 1147600000 735190000 412370000 11473 872 10648 61096;61097;61098;61099 74187;74188;74189;74190;74191 74191 5 LGEWVGLCK Unmodified 1060.5376 0.53755128 801 P25398 RPS12 40S ribosomal protein S12 yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 67.897 68.033 2 3.0421E-05 21420 20211116_3428_TMUAki_TMT10x_P_F1 107.47 68.317 77580000 127530000 741570 127300000 124800000 116950000 98181000 53469000 44052000 60888000 95179000 72239000 119000000 7657200 129730000 119030000 118350000 99305000 57790000 48998000 59160000 90233000 7 7 3 7 7 7 7 7 7 7 7 45837000 72479000 251170 73473000 87649000 92415000 69789000 29515000 24002000 34399000 54726000 42680000 67634000 4552900 75167000 83604000 91564000 70306000 33329000 27512000 33394000 51841000 4 4 2 4 4 4 4 4 4 4 4 31743000 55055000 490400 53824000 37146000 24535000 28392000 23955000 20050000 26489000 40453000 29559000 51368000 3104400 54559000 35423000 26788000 28999000 24461000 21487000 25766000 38392000 3 3 1 3 3 3 3 3 3 3 3 5623600000 3489700000 2133900000 11474 801 10649 61100;61101;61102;61103;61104;61105 74192;74193;74194;74195;74196;74197;74198;74199 74192 8 LGEYEDVSR Unmodified 1066.4931 0.49310351 2570 Q99426;Q99426-2 TBCB Tubulin-folding cofactor B yes no 0 0 0 0 By MS/MS 3 0 1 1 37.603 37.629 2 0.094684 11041 20211116_3430_TMUAki_TMT10x_P_F3 46.457 3.3333 272680 383140 1459.2 477910 709100 520430 357660 265250 438540 295540 367130 253900 357870 30079 481490 671170 521820 383670 283470 440060 287390 356370 1 1 1 1 1 1 1 1 1 1 1 272680 383140 1459.2 477910 709100 520430 357660 265250 438540 295540 367130 253900 357870 30079 481490 671170 521820 383670 283470 440060 287390 356370 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12376000 12376000 0 11475 2570 10650 61106 74200 74200 1 LGEYEDVSRVEK Unmodified 1422.6991 0.69907354 2570 Q99426;Q99426-2 TBCB Tubulin-folding cofactor B yes no 0 0 0 1 By MS/MS By matching 3.5 0.5 1 1 1 1 44.611 44.734 3 0.00013211 13814 20211116_3430_TMUAki_TMT10x_P_F3 94.023 63.411 1078400 1475100 0 2051800 2679400 2268400 1357200 1304400 1537000 1062500 1496700 1004000 1378600 100650 2055700 2535200 2275900 1451300 1367600 1554300 1047600 1445100 1 1 0 1 1 1 1 1 1 1 1 1078400 1475100 0 2051800 2679400 2268400 1357200 1304400 1537000 1062500 1496700 1004000 1378600 100650 2055700 2535200 2275900 1451300 1367600 1554300 1047600 1445100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 191650000 90361000 101290000 11476 2570 10651 61107;61108 74201 74201 1 LGEYGFQNALIVR Unmodified 1478.7882 0.78816332 38 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS 5.25 3.06 4 1 3 4 7 5 69.577 69.622 2;3 8.9117E-30 21959 20211116_3428_TMUAki_TMT10x_P_F1 249.23 223.99 + 73102000 108390000 800000 101880000 96028000 124480000 105560000 161330000 149710000 122040000 106870000 68069000 101120000 5819900 104740000 92341000 126240000 107950000 161000000 148850000 120810000 104420000 13 13 7 13 13 13 13 13 13 13 13 43221000 62712000 261600 58181000 56844000 96267000 74653000 100290000 92612000 76480000 65818000 40242000 58500000 3672000 60244000 54945000 95812000 75348000 101050000 92480000 75676000 64321000 7 7 3 7 7 7 7 7 7 7 7 29882000 45681000 538400 43702000 39184000 28210000 30910000 61047000 57098000 45562000 41054000 27827000 42618000 2147900 44492000 37396000 30432000 32597000 59948000 56373000 45136000 40100000 6 6 4 6 6 6 6 6 6 6 6 17366000000 9587700000 7778200000 11477 38 10652 61109;61110;61111;61112;61113;61114;61115;61116;61117;61118;61119;61120 74202;74203;74204;74205;74206;74207;74208;74209;74210;74211;74212;74213;74214;74215;74216;74217 74202 16 LGFAGLVQEISFGTTK Unmodified 1666.893 0.89302232 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 0 By MS/MS By MS/MS 2.96 1.54 3 4 15 1 1 16 8 84.587 84.559 2;3 1.1512E-60 26609 20211116_3440_TMUAki_TMT10x_S_F2 294.69 258.16 242020000 420410000 2868700 368890000 304220000 393950000 318830000 269440000 259510000 283950000 320500000 225360000 392090000 22650000 380350000 292180000 396990000 320800000 280660000 268770000 276720000 307290000 22 22 15 22 22 22 22 22 22 22 22 125760000 208890000 1126500 188510000 127830000 250410000 147370000 141250000 131800000 145940000 159990000 117100000 194840000 10932000 194680000 123090000 248830000 147980000 149260000 135760000 142340000 153460000 12 12 8 12 12 12 12 12 12 12 12 116270000 211520000 1742200 180380000 176390000 143540000 171450000 128190000 127710000 138010000 160510000 108270000 197250000 11718000 185670000 169090000 148150000 172820000 131400000 133000000 134380000 153830000 10 10 7 10 10 10 10 10 10 10 10 59080000000 28385000000 30695000000 11478 1079 10653 61121;61122;61123;61124;61125;61126;61127;61128;61129;61130;61131;61132;61133;61134;61135;61136;61137;61138;61139;61140;61141;61142;61143;61144 74218;74219;74220;74221;74222;74223;74224;74225;74226;74227;74228;74229;74230;74231;74232;74233;74234;74235;74236;74237;74238;74239;74240;74241;74242;74243;74244;74245;74246;74247 74239 30 LGFATSSDVIEMK Oxidation (M) 1412.6857 0.68573166 1010 P42285 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 0 0 1 0 By MS/MS 5 0 1 1 60.084 60.259 2 0.019439 18822 20211116_3433_TMUAki_TMT10x_P_F5 65.157 39.94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11479 1010 10654 61145 74248 74248 1304 1 LGFDKENVYDELR Unmodified 1596.7784 0.77838649 260 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 61.012 61.064 3 4.88E-06 19136 20211116_3433_TMUAki_TMT10x_P_F5 104.95 79.412 30148000 56629000 440250 36755000 51261000 75710000 44409000 76994000 59928000 69513000 57698000 28074000 52767000 3188700 39482000 49005000 74754000 45885000 77993000 60208000 68199000 55728000 6 6 5 6 6 6 6 6 6 6 6 12157000 22349000 234770 14209000 24003000 44999000 24145000 29359000 23746000 27207000 22171000 11321000 20824000 1392600 15531000 23033000 43591000 24471000 30575000 24119000 26661000 21437000 2 2 2 2 2 2 2 2 2 2 2 17991000 34280000 205480 22546000 27258000 30711000 20264000 47635000 36182000 42306000 35526000 16753000 31943000 1796100 23951000 25972000 31163000 21414000 47418000 36089000 41538000 34291000 4 4 3 4 4 4 4 4 4 4 4 2824700000 1372300000 1452400000 11480 260 10655 61146;61147;61148;61149;61150;61151 74249;74250;74251;74252;74253;74254;74255 74250 7 LGFDKENVYDELRQCIR Unmodified 2154.0528 0.052787212 260 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 0 0 0 2 By MS/MS 8 0 1 1 66.937 66.85 4 0.095231 20482 20211116_3447_TMUAki_TMT10x_S_F8 37.042 19.553 2735500 4939400 0 3917100 5575700 3358200 3350300 5730800 3169800 5354700 4215600 2546900 4605200 250890 4060000 5289300 3508900 3509100 5695700 3269700 5245200 4034300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2735500 4939400 0 3917100 5575700 3358200 3350300 5730800 3169800 5354700 4215600 2546900 4605200 250890 4060000 5289300 3508900 3509100 5695700 3269700 5245200 4034300 1 1 0 1 1 1 1 1 1 1 1 197570000 0 197570000 11481 260 10656 61152 74256 74256 1 LGFEDGSVLK Unmodified 1063.555 0.55497548 588 P09936 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.86 1.46 1 2 2 4 3 2 8 6 60.87 60.813 2;3 1.9055E-09 17838 20211116_3434_TMUAki_TMT10x_P_F6 182.76 125.66 167900000 260150000 2001100 351880000 211150000 221660000 165080000 138530000 168900000 147640000 207280000 156340000 243090000 16013000 350550000 201400000 231970000 169980000 145310000 173020000 143820000 198770000 17 17 11 17 17 17 17 17 17 17 17 87416000 131410000 1187900 189050000 146610000 164040000 94583000 71316000 87354000 75129000 105670000 81400000 122840000 9003400 188420000 139330000 166580000 98436000 77303000 89834000 73218000 101370000 9 9 6 9 9 9 9 9 9 9 9 80480000 128730000 813160 162830000 64541000 57614000 70501000 67212000 81545000 72512000 101610000 74939000 120250000 7009100 162140000 62071000 65399000 71543000 68011000 83186000 70601000 97401000 8 8 5 8 8 8 8 8 8 8 8 29999000000 17926000000 12073000000 11482 588 10657 61153;61154;61155;61156;61157;61158;61159;61160;61161;61162;61163;61164;61165;61166 74257;74258;74259;74260;74261;74262;74263;74264;74265;74266;74267;74268;74269;74270;74271;74272;74273;74274 74266 18 LGFGSFVEK Unmodified 982.51238 0.51238239 718 P18564;P18564-2 ITGB6 Integrin beta-6 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 63.828 64.147 2 0.0004089 19876 20211116_3436_TMUAki_TMT10x_P_F8 124.08 0 59389000 95946000 334690 103120000 72432000 94136000 67640000 61234000 60447000 61510000 75844000 55298000 89555000 5239700 104560000 69339000 95714000 68638000 63927000 62356000 60062000 72687000 5 5 3 5 5 5 5 5 5 5 5 34699000 55139000 255280 58299000 47312000 72045000 42925000 38286000 37647000 37695000 44935000 32309000 51462000 3167300 59457000 45262000 71788000 43607000 40613000 38789000 36839000 43122000 3 3 2 3 3 3 3 3 3 3 3 24690000 40808000 79408 44825000 25120000 22090000 24715000 22948000 22800000 23814000 30908000 22989000 38093000 2072400 45105000 24077000 23926000 25031000 23314000 23567000 23223000 29565000 2 2 1 2 2 2 2 2 2 2 2 2945800000 1550100000 1395700000 11483 718 10658 61167;61168;61169;61170 74275;74276;74277;74278;74279 74276 5 LGFSEVELVQMVVDGVK Oxidation (M) 1863.9652 0.96520098 642 P12277 CKB Creatine kinase B-type yes yes 0 0 1 0 By MS/MS By MS/MS 4.9 1.58 1 1 2 2 2 2 5 5 81.118 81.118 3 9.5603E-07 26267 20211116_3444_TMUAki_TMT10x_S_F5 96.163 77.331 16634000 28143000 414480 24503000 18129000 24999000 23005000 17848000 20422000 21203000 22116000 15491000 26247000 1785200 25261000 17531000 25276000 23000000 18608000 20949000 20570000 21282000 8 8 7 8 8 8 8 8 8 8 8 6176100 10536000 71307 9332000 5505800 11629000 7158200 6601400 7108000 7289000 8356600 5751100 9827000 568030 9639600 5325100 11592000 7173000 6986200 7277700 7090500 8022600 3 3 2 3 3 3 3 3 3 3 3 10458000 17607000 343170 15171000 12623000 13370000 15846000 11246000 13314000 13914000 13759000 9739500 16420000 1217200 15622000 12206000 13684000 15827000 11621000 13671000 13479000 13259000 5 5 5 5 5 5 5 5 5 5 5 5572800000 2974400000 2598400000 11484 642 10659 61171;61172;61173;61174;61175;61176;61177;61178;61179;61180 74280;74281;74282;74283;74284;74285;74286;74287;74288;74289;74290 74288 681 11 LGFSEYCR Unmodified 1030.4542 0.45421558 1716 Q14566 MCM6 DNA replication licensing factor MCM6 yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 45.244 45.364 2 0.0025283 11535 20211116_3434_TMUAki_TMT10x_P_F6 108.46 102.71 8209300 13261000 68121 15988000 12365000 11465000 8108800 11545000 11469000 9880700 12461000 7643900 12384000 771700 16050000 11751000 11961000 8551700 11684000 11556000 9718500 11990000 3 3 1 3 3 3 3 3 3 3 3 2628600 4144000 0 5465700 7267300 7224300 3683500 4056100 3764200 3279100 4000100 2447300 3871700 259070 5508800 6876600 7180000 3926200 4260600 3834300 3234600 3851500 1 1 0 1 1 1 1 1 1 1 1 5580700 9116700 68121 10522000 5097300 4240700 4425400 7488600 7704500 6601500 8460700 5196600 8512100 512630 10541000 4874300 4780500 4625500 7423400 7721300 6483900 8138300 2 2 1 2 2 2 2 2 2 2 2 407390000 217740000 189640000 11485 1716 10660 61181;61182;61183 74291;74292;74293;74294 74291 4 LGFTVTVGNNR Unmodified 1176.6251 0.62512073 848 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 52.532 52.285 2 2.9178E-17 15708 20211116_3442_TMUAki_TMT10x_S_F4 187.14 143.9 9596400 14942000 27287 16769000 16939000 18248000 11987000 11768000 11353000 10673000 12202000 8935300 13950000 910230 17000000 16118000 18353000 12398000 12259000 11608000 10469000 11745000 3 3 2 3 3 3 3 3 3 3 3 6799900 10321000 27287 11808000 13969000 15631000 9176600 8272000 8027300 7426400 8586700 6331600 9636600 689600 11998000 13275000 15523000 9523300 8756500 8236500 7287900 8266000 2 2 2 2 2 2 2 2 2 2 2 2796500 4621000 0 4960700 2970200 2616800 2810200 3496000 3326000 3246800 3615800 2603700 4313200 220630 5001700 2843000 2830200 2874800 3502700 3371300 3181300 3479100 1 1 0 1 1 1 1 1 1 1 1 431830000 287730000 144100000 11486 848 10661 61184;61185;61186;61187 74295;74296;74297;74298;74299 74299 5 LGGAGMER Unmodified 789.38032 0.38032236 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS 3 0 1 1 31.921 31.676 2 0.07933 9711 20211116_3441_TMUAki_TMT10x_S_F3 52.636 21.333 569830 969040 1544.2 860770 584570 412670 639590 360530 335840 401980 700450 530580 903810 48889 879080 561990 446870 636490 370430 367890 390890 664420 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 569830 969040 1544.2 860770 584570 412670 639590 360530 335840 401980 700450 530580 903810 48889 879080 561990 446870 636490 370430 367890 390890 664420 1 1 1 1 1 1 1 1 1 1 1 24178000 0 24178000 11487 1171 10662 61188 74300 74300 1 LGGAVLSFSEATSSVQK Unmodified 1679.873 0.87301516 831 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 70.434 70.39 3 2.3306E-15 22494 20211116_3436_TMUAki_TMT10x_P_F8 135.86 117.4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11488 831 10663 61189;61190 74301;74302 74301 2 LGGEVSCLVAGTK Unmodified 1289.6649 0.66493664 659 P13804 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes yes 0 0 0 0 By MS/MS By matching 6 0 2 1 1 61.292 61.307 3 0.011987 18112 20211116_3434_TMUAki_TMT10x_P_F6 55.314 40.895 2185200 3252100 31407 3633500 3366500 4556600 2507000 2705400 2478900 2359200 2752400 2034800 3036000 226980 3693600 3208200 4543500 2587000 2833800 2532800 2318300 2646700 1 1 1 1 1 1 1 1 1 1 1 2185200 3252100 31407 3633500 3366500 4556600 2507000 2705400 2478900 2359200 2752400 2034800 3036000 226980 3693600 3208200 4543500 2587000 2833800 2532800 2318300 2646700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 409710000 292040000 117670000 11489 659 10664 61191;61192 74303 74303 1 LGGGMPGLGQGPPTDAPAVDTAEQVYISSLALLK Oxidation (M) 3338.7068 0.70680804 95 O00487 PSMD14 26S proteasome non-ATPase regulatory subunit 14 yes yes 0 0 1 0 By MS/MS By MS/MS 6.56 1.69 1 1 4 5 5 10 6 82.123 82.13 3;4;5 3.1962E-17 28704 20211116_3435_TMUAki_TMT10x_P_F7 118.61 112.58 11214000 18990000 168290 16304000 12786000 22939000 14832000 15417000 17058000 16424000 15711000 10442000 17709000 994500 16922000 12321000 22790000 15007000 16085000 17208000 15999000 15197000 14 14 9 14 14 14 14 14 14 14 14 7866200 12855000 147580 11273000 7490600 17654000 9457700 10501000 11654000 10989000 10706000 7325300 11989000 712150 11707000 7240500 17430000 9558400 11053000 11726000 10712000 10357000 7 7 5 7 7 7 7 7 7 7 7 3347700 6134600 20712 5031100 5295800 5285000 5374200 4915700 5404000 5435200 5004400 3117100 5720100 282350 5214300 5080300 5360100 5448100 5032100 5482200 5286900 4839900 7 7 4 7 7 7 7 7 7 7 7 5563000000 2525000000 3038000000 11490 95 10665 61193;61194;61195;61196;61197;61198;61199;61200;61201;61202;61203;61204;61205;61206;61207;61208 74304;74305;74306;74307;74308;74309;74310;74311;74312;74313;74314;74315;74316;74317 74308 72 14 LGGHGPSFPLK Unmodified 1108.6029 0.60292873 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 3.7 2.49 2 3 2 1 2 6 4 46.084 46.063 2;3 2.4836E-07 14038 20211116_3429_TMUAki_TMT10x_P_F2 117.53 71.368 33570000 56053000 429400 60153000 76889000 77370000 38002000 54774000 58849000 49080000 52840000 31259000 52319000 3647400 61334000 72764000 77250000 41226000 56660000 58743000 48168000 51159000 10 10 5 10 10 10 10 10 10 10 10 22746000 37222000 199370 38720000 66881000 67787000 30662000 36278000 39132000 34250000 35398000 21179000 34738000 2602700 39829000 63225000 66556000 33258000 38414000 39307000 33534000 34263000 6 6 3 6 6 6 6 6 6 6 6 10824000 18831000 230030 21433000 10008000 9583600 7340100 18496000 19717000 14830000 17442000 10080000 17581000 1044700 21504000 9539100 10694000 7968000 18246000 19436000 14635000 16896000 4 4 2 4 4 4 4 4 4 4 4 7596500000 5247600000 2348900000 11491 648 10666 61209;61210;61211;61212;61213;61214;61215;61216;61217;61218 74318;74319;74320;74321;74322;74323;74324;74325;74326;74327;74328;74329 74321 12 LGGIGQFLAK Unmodified 1002.5862 0.58621603 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 By MS/MS By MS/MS 2.89 0.875 2 2 10 4 13 5 75.917 75.783 2;3 8.3365E-10 25817 20211116_3441_TMUAki_TMT10x_S_F3 192.6 123.69 135430000 218750000 1309100 226880000 172350000 197020000 140930000 186290000 171540000 166680000 181330000 126100000 204140000 12116000 230430000 164490000 202310000 145540000 189360000 173520000 163600000 174620000 16 16 7 16 16 16 16 16 16 16 16 52031000 81626000 869670 87033000 79197000 120510000 68284000 70156000 65163000 64546000 69171000 48451000 76186000 5321700 88907000 75704000 119570000 69737000 73703000 66571000 63270000 66603000 10 10 5 10 10 10 10 10 10 10 10 83402000 137120000 439470 139850000 93153000 76505000 72643000 116140000 106370000 102140000 112160000 77653000 127960000 6794200 141530000 88787000 82736000 75802000 115660000 106950000 100330000 108020000 6 6 2 6 6 6 6 6 6 6 6 13772000000 6838400000 6933400000 11492 1546 10667 61219;61220;61221;61222;61223;61224;61225;61226;61227;61228;61229;61230;61231;61232;61233;61234;61235;61236 74330;74331;74332;74333;74334;74335;74336;74337;74338;74339;74340;74341;74342;74343;74344;74345;74346;74347;74348;74349;74350;74351;74352 74349 23 LGGIPVGVVAVETR Unmodified 1365.798 0.79799972 1591 Q13085;Q13085-4;Q13085-3;Q13085-2 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 64.67 65.086 2 4.9454E-23 21454 20211116_3435_TMUAki_TMT10x_P_F7 180.97 134.95 9687300 16506000 133100 16652000 11766000 16346000 11217000 11733000 10970000 12532000 12724000 9020900 15402000 956310 16973000 11276000 16568000 11399000 12186000 11233000 12206000 12220000 3 3 3 3 3 3 3 3 3 3 3 6034700 10402000 130900 10475000 7262900 12398000 7491500 7440400 6847800 8105900 8004300 5619800 9706100 639510 10710000 6977700 12400000 7567000 7835000 7035600 7889300 7685600 2 2 2 2 2 2 2 2 2 2 2 3652700 6104300 2196 6176300 4503400 3948400 3725500 4292900 4122200 4426000 4720000 3401000 5696200 316790 6262400 4298700 4167500 3831900 4351300 4197500 4317200 4534700 1 1 1 1 1 1 1 1 1 1 1 1771400000 958780000 812660000 11493 1591 10668 61237;61238;61239 74353;74354;74355 74353 3 LGGLDTRPHYITR Unmodified 1497.8052 0.80521036 2183 Q8N1B4;Q8N1B4-2 VPS52 Vacuolar protein sorting-associated protein 52 homolog yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 36.525 36.495 4 5.7431E-07 8584 20211116_3428_TMUAki_TMT10x_P_F1 119.96 97.385 819150 1239700 0 1299500 1179800 992470 818180 772360 781130 693920 963620 762560 1157000 54864 1316900 1121000 1025100 847680 794040 802760 680950 923920 2 2 0 2 2 2 2 2 2 2 2 370530 560130 0 588550 753290 651550 418690 371580 376900 346460 429890 344920 522760 25378 599350 713180 653570 440900 391180 387140 339400 413060 1 1 0 1 1 1 1 1 1 1 1 448620 679620 0 710910 426520 340930 399490 400770 404230 347470 533730 417650 634270 29485 717500 407800 371480 406780 402860 415620 341550 510860 1 1 0 1 1 1 1 1 1 1 1 74535000 51955000 22580000 11494 2183 10669 61240;61241 74356;74357 74356 2 LGGLTQAPGNPVLAVQINQDK Unmodified 2132.159 0.15896684 812 P26368;P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 0 0 0 0 By MS/MS By MS/MS 4.92 3.33 5 2 5 6 6 71.406 71.41 2;3;4 2.5188E-84 24758 20211116_3439_TMUAki_TMT10x_S_F1 296.25 272.65 68295000 115420000 938480 108160000 80201000 104230000 80870000 76792000 74310000 82274000 85089000 63592000 107670000 6099400 110790000 76934000 105810000 81792000 79626000 76267000 80128000 81749000 19 19 9 19 19 19 19 19 19 19 19 31511000 52745000 145000 48539000 34694000 63817000 38391000 36439000 35401000 38048000 39582000 29338000 49201000 2435800 50044000 33345000 63455000 38655000 38479000 36293000 37094000 38054000 9 9 4 9 9 9 9 9 9 9 9 36785000 62677000 793480 59620000 45506000 40418000 42480000 40353000 38909000 44226000 45507000 34254000 58473000 3663600 60751000 43589000 42358000 43137000 41147000 39974000 43034000 43695000 10 10 5 10 10 10 10 10 10 10 10 21291000000 13393000000 7897700000 11495 812 10670 61242;61243;61244;61245;61246;61247;61248;61249;61250;61251;61252;61253 74358;74359;74360;74361;74362;74363;74364;74365;74366;74367;74368;74369;74370;74371;74372;74373;74374;74375;74376 74370 19 LGGNVVVSLEGKPL Unmodified 1380.7977 0.79766537 3229 Q9Y281;Q9Y281-3 CFL2 Cofilin-2 yes no 0 0 0 1 By MS/MS 7 0 1 1 70.767 71.163 3 0.00034409 24064 20211116_3435_TMUAki_TMT10x_P_F7 81.311 54.796 2999200 5202800 7510.3 4378700 3056100 5730100 3829600 3235100 2806900 3003000 3843700 2792600 4851700 256450 4545500 2950300 5698000 3812500 3408200 2937100 2942500 3675800 1 1 1 1 1 1 1 1 1 1 1 2999200 5202800 7510.3 4378700 3056100 5730100 3829600 3235100 2806900 3003000 3843700 2792600 4851700 256450 4545500 2950300 5698000 3812500 3408200 2937100 2942500 3675800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 335740000 335740000 0 11496 3229 10671 61254 74377 74377 1 LGGSAVISLEGKPL Unmodified 1339.7711 0.77111627 787 P23528 CFL1 Cofilin-1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.66 2.29 4 3 4 4 4 4 5 4 16 16 70.164 70.126 2;3 1.5796E-27 23265 20211116_3435_TMUAki_TMT10x_P_F7 206.27 178.18 352170000 580280000 1498700 560910000 401450000 521720000 404560000 343530000 338740000 353460000 418050000 327890000 541390000 28195000 573010000 384900000 529910000 408160000 358570000 350300000 344800000 400830000 42 42 17 42 42 42 42 42 42 42 42 174040000 274230000 669470 270060000 187610000 327110000 199950000 166560000 168510000 173110000 202610000 162040000 255870000 13436000 276660000 180120000 326110000 201200000 177650000 174010000 168800000 194400000 20 20 7 20 20 20 20 20 20 20 20 178130000 306050000 829180 290850000 213840000 194610000 204610000 176970000 170230000 180350000 215440000 165850000 285520000 14759000 296350000 204780000 203800000 206960000 180920000 176290000 176000000 206430000 22 22 10 22 22 22 22 22 22 22 22 99535000000 53605000000 45931000000 11497 787 10672 61255;61256;61257;61258;61259;61260;61261;61262;61263;61264;61265;61266;61267;61268;61269;61270;61271;61272;61273;61274;61275;61276;61277;61278;61279;61280;61281;61282;61283;61284;61285;61286 74378;74379;74380;74381;74382;74383;74384;74385;74386;74387;74388;74389;74390;74391;74392;74393;74394;74395;74396;74397;74398;74399;74400;74401;74402;74403;74404;74405;74406;74407;74408;74409;74410;74411;74412;74413;74414;74415;74416;74417;74418;74419 74391 42 LGGSLADSYLDEGFLLDK Unmodified 1911.9466 0.94657403 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 3.76 1.8 3 2 5 4 3 2 2 12 9 72.574 72.566 2;3 1.0066E-30 26985 20211116_3442_TMUAki_TMT10x_S_F4 179.93 160.33 71235000 118000000 1124700 108560000 81324000 96505000 91818000 53808000 58847000 63597000 84893000 66332000 110080000 6679100 111230000 78283000 98097000 91565000 57156000 62234000 61709000 81087000 23 23 14 23 23 23 23 23 23 23 23 30921000 49176000 340550 47076000 28319000 51797000 35208000 22263000 24413000 27441000 35718000 28791000 45879000 2636600 48244000 27334000 51813000 35018000 24281000 25709000 26587000 34106000 10 10 5 10 10 10 10 10 10 10 10 40314000 68828000 784180 61481000 53005000 44708000 56610000 31545000 34435000 36156000 49175000 37541000 64196000 4042500 62989000 50949000 46284000 56547000 32876000 36525000 35122000 46981000 13 13 9 13 13 13 13 13 13 13 13 15523000000 9122900000 6400100000 11498 1429 10673 61287;61288;61289;61290;61291;61292;61293;61294;61295;61296;61297;61298;61299;61300;61301;61302;61303;61304;61305;61306;61307 74420;74421;74422;74423;74424;74425;74426;74427;74428;74429;74430;74431;74432;74433;74434;74435;74436;74437;74438;74439;74440;74441;74442;74443 74440 24 LGGSLADSYLDEGFLLDKK Unmodified 2040.0415 0.041537049 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 1 By MS/MS By MS/MS 6.17 1.34 1 1 1 2 1 3 3 77.72 77.735 3 1.1078E-31 26900 20211116_3435_TMUAki_TMT10x_P_F7 192.55 169.45 19128000 31938000 354910 25876000 21323000 43598000 26425000 33561000 26983000 29560000 29009000 17813000 29779000 1947400 27091000 20595000 43096000 26554000 34509000 27498000 29034000 27921000 3 3 3 3 3 3 3 3 3 3 3 14157000 23631000 225110 19583000 14616000 36492000 19771000 27155000 21023000 22819000 22530000 13184000 22035000 1390000 20517000 14157000 35923000 19824000 27951000 21386000 22465000 21687000 2 2 2 2 2 2 2 2 2 2 2 4970800 8306600 129810 6293100 6707500 7105100 6653700 6405800 5959400 6740400 6479300 4629300 7743400 557410 6574400 6438000 7172400 6730500 6558300 6111500 6569200 6234200 1 1 1 1 1 1 1 1 1 1 1 13980000000 6370300000 7610100000 11499 1429 10674 61308;61309;61310;61311;61312;61313 74444;74445 74444 2 LGGSLIVAFEGCPV Unmodified 1417.7275 0.72753689 1282 P60981;P60981-2 DSTN Destrin yes no 0 0 0 0 By MS/MS By MS/MS 4.83 1.34 1 2 1 1 1 3 3 81.481 81.477 2 1.6599E-06 27304 20211116_3431_TMUAki_TMT10x_P_F4 117.89 103.65 6414300 10164000 142150 9684300 7684900 9215700 7795500 6283000 6121300 6865600 8402800 5972900 9482500 616480 9906400 7375800 9351400 7849700 6553600 6381600 6681300 8035300 6 6 4 6 6 6 6 6 6 6 6 3194200 4932000 33301 4605800 3153500 5621300 3602600 2961700 2885700 3307400 4047900 2973800 4600900 229700 4736900 3032700 5604200 3608600 3155800 3008300 3215900 3868900 3 3 1 3 3 3 3 3 3 3 3 3220100 5232200 108850 5078500 4531400 3594400 4192900 3321300 3235600 3558200 4354900 2999000 4881600 386780 5169600 4343000 3747200 4241100 3397800 3373300 3465300 4166400 3 3 3 3 3 3 3 3 3 3 3 1119700000 587550000 532110000 11500 1282 10675 61314;61315;61316;61317;61318;61319 74446;74447;74448;74449;74450 74446 5 LGGSPFGPAGTGK Unmodified 1144.5877 0.58767259 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS 8 0 1 1 51.149 51.05 3 0.016319 14054 20211116_3447_TMUAki_TMT10x_S_F8 56.938 41.366 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11501 1695 10676 61320 74451 74451 1 LGGSPTSLGTWGSWIGPDHDK Unmodified 2167.0334 0.033431979 666 P14314;P14314-2 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 0 By MS/MS 8 0 1 1 70.889 70.952 3 8.9232E-06 22715 20211116_3436_TMUAki_TMT10x_P_F8 80.733 63.244 3702700 5245700 0 7285700 2953000 3934300 3553900 1940100 1556600 1744900 3130300 3447200 4902500 251400 7238400 2843700 4169900 3511600 2067300 1726900 1712200 2971000 1 1 0 1 1 1 1 1 1 1 1 3702700 5245700 0 7285700 2953000 3934300 3553900 1940100 1556600 1744900 3130300 3447200 4902500 251400 7238400 2843700 4169900 3511600 2067300 1726900 1712200 2971000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 601240000 601240000 0 11502 666 10677 61321 74452 74452 1 LGGTALAQCFSQLGEHPPDLDLPENLVR Unmodified 3046.5182 0.51821941 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 0 By MS/MS By MS/MS 6.73 0.962 1 4 3 3 5 6 78.54 78.542 3;4 6.4239E-18 27668 20211116_3446_TMUAki_TMT10x_S_F7 125.16 118.79 20044000 33772000 637040 32021000 22154000 27416000 26952000 15968000 15228000 17310000 24360000 18666000 31506000 2135800 32721000 21392000 27956000 26725000 16853000 16329000 16850000 23216000 7 7 4 7 7 7 7 7 7 7 7 8999500 15052000 493030 13949000 8044700 15499000 12106000 6347500 6410800 7596700 10708000 8383100 14041000 1192200 14331000 7845600 15488000 11891000 6952900 6923600 7367800 10196000 3 3 3 3 3 3 3 3 3 3 3 11044000 18720000 144020 18072000 14110000 11917000 14846000 9620600 8817500 9712900 13652000 10283000 17465000 943610 18390000 13546000 12468000 14834000 9900200 9405600 9482300 13020000 4 4 1 4 4 4 4 4 4 4 4 9679700000 4992900000 4686800000 11503 157 10678 61322;61323;61324;61325;61326;61327;61328;61329;61330;61331;61332 74453;74454;74455;74456;74457;74458;74459 74458 7 LGGTCVNVGCVPK Unmodified 1359.6639 0.66389078 466 P00390;P00390-2;P00390-3;P00390-5;P00390-4 GSR Glutathione reductase, mitochondrial yes no 0 0 0 0 By MS/MS 8 0 1 1 50.241 50.327 3 0.0016513 14259 20211116_3436_TMUAki_TMT10x_P_F8 67.118 44.92 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11504 466 10679 61333 74460 74460 1 LGGTIDDCELVEGLVLTQK Unmodified 2059.0507 0.050721527 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 By MS/MS By MS/MS 3.4 1.46 2 4 5 4 3 2 9 11 80.791 80.764 2;3 1.0319E-50 27947 20211116_3430_TMUAki_TMT10x_P_F3 225.7 199.55 95383000 157320000 5836400 149540000 110400000 155920000 126420000 108940000 98559000 112780000 125860000 88852000 146760000 12947000 153200000 106600000 157390000 126540000 113250000 102460000 109990000 120570000 23 23 13 23 23 23 23 23 23 23 23 42387000 68922000 1504700 63125000 40257000 83771000 51146000 50249000 45685000 51069000 56438000 39478000 64290000 4509600 65116000 38962000 83313000 51141000 52806000 47097000 49843000 54110000 14 14 8 14 14 14 14 14 14 14 14 52995000 88395000 4331700 86419000 70147000 72151000 75279000 58691000 52874000 61709000 69426000 49374000 82475000 8437100 88088000 67637000 74080000 75396000 60443000 55358000 60144000 66461000 9 9 5 9 9 9 9 9 9 9 9 26523000000 13859000000 12664000000 11505 1147 10680 61334;61335;61336;61337;61338;61339;61340;61341;61342;61343;61344;61345;61346;61347;61348;61349;61350;61351;61352;61353 74461;74462;74463;74464;74465;74466;74467;74468;74469;74470;74471;74472;74473;74474;74475;74476;74477;74478;74479;74480;74481;74482 74465 22 LGGVSSTEELDIR Unmodified 1374.6991 0.69907354 1950 Q5VTR2 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 0 0 0 0 By MS/MS 3 0 1 1 52.793 52.42 2 7.5884E-34 18126 20211116_3441_TMUAki_TMT10x_S_F3 233.54 199.16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11506 1950 10681 61354 74483 74483 1 LGHAEQKDEMVPR Oxidation (M) 1524.7355 0.73547582 3056 Q9P258 RCC2 Protein RCC2 yes yes 0 0 1 1 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 30.065 29.929 3;4 0.0012048 6334 20211116_3431_TMUAki_TMT10x_P_F4 75.96 54.202 2355800 3795000 10248 3289200 3402400 3656800 3098900 2480900 3110400 2497200 3110900 2193500 3539300 208720 3396800 3254600 3676200 3159600 2582200 3163800 2438300 3001000 6 6 3 6 6 6 6 6 6 6 6 1436800 2262800 0 1981500 2301000 2623200 1721800 1384100 1793000 1477500 1775900 1337700 2110400 120420 2050900 2191000 2604900 1779000 1472600 1820300 1439100 1713700 3 3 0 3 3 3 3 3 3 3 3 918990 1532200 10248 1307700 1101400 1033600 1377100 1096800 1317400 1019800 1335000 855750 1428800 88296 1345900 1063600 1071300 1380600 1109700 1343500 999130 1287300 3 3 3 3 3 3 3 3 3 3 3 224910000 184400000 40517000 11507 3056 10682 61355;61356;61357;61358;61359 74484;74485;74486;74487;74488;74489 74485 3099 6 LGHAEQKDEMVPR Unmodified 1508.7406 0.7405612 3056 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 32.961 32.947 4 8.4877E-12 7575 20211116_3431_TMUAki_TMT10x_P_F4 152.99 130.07 1707500 2379700 21926 3441000 4394900 2908400 2232000 876700 1055100 1243800 2077400 1589600 2224500 141730 3427500 4157200 2950100 2340700 1004900 1161200 1199700 1972400 2 2 1 2 2 2 2 2 2 2 2 1707500 2379700 21926 3441000 4394900 2908400 2232000 876700 1055100 1243800 2077400 1589600 2224500 141730 3427500 4157200 2950100 2340700 1004900 1161200 1199700 1972400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 178460000 178460000 0 11508 3056 10682 61360;61361 74490;74491 74490 2 LGHDPYR Unmodified 856.41915 0.4191507 719 P18583;P18583-3;P18583-5;P18583-6;P18583-10;P18583-4;P18583-7;P18583-9 SON Protein SON yes no 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 1 1 1 1 3 1 28.316 28.2 3 0.0047192 8405 20211116_3441_TMUAki_TMT10x_S_F3 95.793 5.8902 550120 718460 11499 698490 792950 2703100 1148900 1444300 893700 674370 643200 512310 670320 59727 743960 769960 2601800 1138900 1509000 911470 690350 628220 2 2 2 2 2 2 2 2 2 2 2 322220 381560 1973 402840 469450 1682900 645330 872570 528150 400060 378880 300030 356120 30615 428610 454670 1617300 641770 913920 537140 410180 370110 1 1 1 1 1 1 1 1 1 1 1 227900 336900 9526 295650 323500 1020200 503610 571740 365550 274320 264320 212270 314210 29111 315360 315290 984530 497140 595030 374330 280170 258110 1 1 1 1 1 1 1 1 1 1 1 21882000 12419000 9463300 11509 719 10683 61362;61363;61364;61365 74492;74493 74493 2 LGHEEQQKR Unmodified 1123.5734 0.57341951 1701 Q14257;Q14257-2 RCN2 Reticulocalbin-2 yes no 0 0 0 1 By MS/MS 3 0 1 1 25.544 25.244 4 0.080322 7231 20211116_3441_TMUAki_TMT10x_S_F3 35.944 22.436 89059 146810 1071.1 102720 102100 149050 109970 71267 73539 112160 96834 82930 136830 8564.4 108600 98161 147230 110010 77609 77234 107850 92691 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 89059 146810 1071.1 102720 102100 149050 109970 71267 73539 112160 96834 82930 136830 8564.4 108600 98161 147230 110010 77609 77234 107850 92691 1 1 1 1 1 1 1 1 1 1 1 1759000 0 1759000 11510 1701 10684 61366 74494 74494 1 LGHELQQAGLK Unmodified 1192.6564 0.65642086 1741 Q14980;Q14980-2;Q14980-4;Q14980-3;Q14980-5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 43.667 43.78 3 0.00030846 11275 20211116_3445_TMUAki_TMT10x_S_F6 84.658 72.082 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11511 1741 10685 61367;61368 74495;74496 74496 2 LGHGLLSGEYSKPVPESGDGERVPEQK Unmodified 2864.4305 0.43045026 1036 P45974;P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 2 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 46.589 46.86 5 6.7898E-42 12219 20211116_3444_TMUAki_TMT10x_S_F5 189.08 174.5 21435000 37430000 221120 47274000 33579000 44511000 24006000 31934000 35176000 30407000 32550000 19958000 34963000 1923600 47491000 31955000 45233000 25197000 33057000 35204000 29760000 31481000 8 8 5 8 8 8 8 8 8 8 8 11543000 20138000 138360 24811000 26627000 36271000 18768000 16520000 18980000 16224000 15884000 10749000 18809000 1282900 25153000 25341000 35800000 19454000 17784000 19189000 15858000 15418000 4 4 3 4 4 4 4 4 4 4 4 9892200 17292000 82758 22463000 6952100 8240100 5238400 15414000 16196000 14182000 16666000 9209500 16154000 640780 22338000 6613900 9433000 5742300 15273000 16014000 13902000 16063000 4 4 2 4 4 4 4 4 4 4 4 7016500000 4562300000 2454200000 11512 1036 10686 61369;61370;61371;61372;61373;61374 74497;74498;74499;74500;74501;74502;74503 74500 7 LGHPEALSAGTGSPQPPSFTYAQQR Unmodified 2596.267 0.26701374 1837 Q15942;Q15942-2 ZYX Zyxin yes no 0 0 0 0 By MS/MS 8 0 1 1 50.935 51.022 3 2.1894E-48 14529 20211116_3436_TMUAki_TMT10x_P_F8 201.64 197.84 668950 1100200 5846.2 1134600 1016400 1711800 928760 884090 887610 871680 1038300 622900 1026800 65749 1163700 972750 1689700 945390 940280 910130 851840 996950 2 2 1 2 2 2 2 2 2 2 2 668950 1100200 5846.2 1134600 1016400 1711800 928760 884090 887610 871680 1038300 622900 1026800 65749 1163700 972750 1689700 945390 940280 910130 851840 996950 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 371440000 371440000 0 11513 1837 10687 61375 74504;74505 74504 2 LGHSFSLVGNK Unmodified 1157.6193 0.61930707 1160 P51610;P51610-2;P51610-4;P51610-3 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 0 0 By MS/MS 2 0 1 1 47.379 47.091 3 0.002152 14436 20211116_3429_TMUAki_TMT10x_P_F2 71.524 49.955 2306000 3652100 0 4229700 5167300 5845100 3066300 4269300 3936800 3060800 3262800 2147100 3409900 228590 4298300 4901700 5819500 3247100 4384100 3943000 3039200 3168400 1 1 0 1 1 1 1 1 1 1 1 2306000 3652100 0 4229700 5167300 5845100 3066300 4269300 3936800 3060800 3262800 2147100 3409900 228590 4298300 4901700 5819500 3247100 4384100 3943000 3039200 3168400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 151410000 151410000 0 11514 1160 10688 61376 74506 74506 1 LGHTDILVGVK Unmodified 1150.671 0.67100829 1756 Q15024 EXOSC7 Exosome complex component RRP42 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 49.695 50.345 3 6.5988E-08 16020 20211116_3446_TMUAki_TMT10x_S_F7 119.53 96.153 2260800 3428600 42257 3456900 3619600 4590100 2656000 2929400 2654600 2584500 2821100 2105400 3199300 245850 3541600 3449000 4568900 2744500 3051900 2706600 2538400 2716300 1 1 1 1 1 1 1 1 1 1 1 2260800 3428600 42257 3456900 3619600 4590100 2656000 2929400 2654600 2584500 2821100 2105400 3199300 245850 3541600 3449000 4568900 2744500 3051900 2706600 2538400 2716300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 239740000 239740000 0 11515 1756 10689 61377;61378 74507;74508 74508 2 LGHVVMGNNAVSPYQQVIEK Oxidation (M) 2198.1154 0.11538747 1272 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E yes yes 0 0 1 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 52.216 52.515 3 2.2724E-13 14610 20211116_3447_TMUAki_TMT10x_S_F8 136.26 121.01 19084000 36472000 136360 35459000 27756000 39667000 20972000 32670000 34972000 29783000 28179000 17769000 34029000 1498000 36309000 26444000 39994000 22061000 33483000 34724000 29206000 27393000 8 8 3 8 8 8 8 8 8 8 8 11102000 20814000 111080 20156000 20888000 32011000 15782000 19163000 19435000 16498000 16160000 10337000 19419000 1065700 20786000 19901000 31591000 16389000 20053000 19495000 16223000 15690000 5 5 2 5 5 5 5 5 5 5 5 7981700 15658000 25278 15304000 6867500 7656600 5189100 13506000 15537000 13285000 12018000 7431800 14609000 432360 15523000 6543200 8403100 5671600 13430000 15229000 12984000 11703000 3 3 1 3 3 3 3 3 3 3 3 5087100000 2960200000 2127000000 11516 1272 10690 61379;61380;61381;61382 74509;74510;74511;74512;74513;74514;74515;74516 74515 1713 8 LGHVVMGNNAVSPYQQVIEK Unmodified 2182.1205 0.12047285 1272 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 57.792 57.724 3 1.0051E-22 16732 20211116_3447_TMUAki_TMT10x_S_F8 146.76 132.93 7911300 13516000 107130 14699000 10391000 9991600 8834600 7647800 7499500 7716800 10431000 7367000 12617000 790480 14841000 9931100 10416000 9001400 7896100 7791900 7533700 9971700 3 3 3 3 3 3 3 3 3 3 3 3218400 5440500 32262 5944100 5299500 5955200 4511600 2170400 1748700 2236800 3805100 2996900 5078400 326040 6028500 5063600 5981100 4532000 2399700 1972900 2181800 3607000 1 1 1 1 1 1 1 1 1 1 1 4692900 8075900 74869 8754700 5091900 4036400 4323000 5477400 5750800 5479900 6625900 4370100 7538200 464440 8812700 4867500 4435400 4469400 5496400 5819000 5351900 6364700 2 2 2 2 2 2 2 2 2 2 2 1581100000 1387200000 194000000 11517 1272 10690 61383;61384;61385 74517;74518;74519;74520 74520 4 LGIGMDTCVIPLR Unmodified 1443.7578 0.75779117 1127 P49903;P49903-2;P49903-4 SEPHS1 Selenide, water dikinase 1 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 72.508 72.554 2 2.1463E-19 23341 20211116_3436_TMUAki_TMT10x_P_F8 195.3 177.4 6776000 10346000 48305 11438000 6790000 9599400 8234300 3792500 3426600 4197000 7026700 6309400 9658400 606990 11564000 6549800 9762200 8128000 4161100 3824100 4082300 6667000 2 2 2 2 2 2 2 2 2 2 2 6776000 10346000 48305 11438000 6790000 9599400 8234300 3792500 3426600 4197000 7026700 6309400 9658400 606990 11564000 6549800 9762200 8128000 4161100 3824100 4082300 6667000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 387150000 387150000 0 11518 1127 10691 61386;61387 74521;74522;74523 74521 3 LGIGMDTCVIPLR Oxidation (M) 1459.7527 0.75270579 1127 P49903;P49903-2;P49903-4 SEPHS1 Selenide, water dikinase 1 yes no 0 0 1 0 By matching By MS/MS 7 0 2 1 1 63.783 64.335 2 3.4474E-06 21737 20211116_3446_TMUAki_TMT10x_S_F7 117.3 93.178 2974200 5825600 47164 5062700 4298700 3906300 3703100 5284000 4556100 4416600 5329600 2769600 5433100 309080 5201300 4109700 4081800 3813700 5276900 4625200 4349200 5117300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2974200 5825600 47164 5062700 4298700 3906300 3703100 5284000 4556100 4416600 5329600 2769600 5433100 309080 5201300 4109700 4081800 3813700 5276900 4625200 4349200 5117300 1 1 1 1 1 1 1 1 1 1 1 1141700000 742600000 399120000 11519 1127 10691 61388;61389 74524 74524 1485 1 LGIHEDSQNR Unmodified 1167.5632 0.56324876 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 By MS/MS By MS/MS 3 1.41 2 2 2 2 2 7 3 28.479 28.354 2;3 1.4704E-19 8459 20211116_3441_TMUAki_TMT10x_S_F3 255.54 229.8 1696600 2717200 15301 2454400 2114500 2634400 1924300 1193800 1383900 1420100 1984000 1579600 2534400 141670 2525200 2022400 2640300 1945100 1293300 1452900 1377600 1895300 8 8 4 8 8 8 8 8 8 8 8 1276200 1972400 14475 1823800 1634000 2169700 1371900 915890 1023900 1049200 1471900 1188200 1839900 107540 1876200 1560000 2160800 1394600 998480 1072700 1019200 1406000 6 6 3 6 6 6 6 6 6 6 6 420420 744760 826.85 630690 480510 464700 552380 277940 360070 370960 512130 391440 694510 34128 648980 462440 479450 550590 294800 380120 358460 489320 2 2 1 2 2 2 2 2 2 2 2 241840000 129870000 111970000 11520 544 10692 61390;61391;61392;61393;61394;61395;61396;61397;61398;61399 74525;74526;74527;74528;74529;74530;74531;74532;74533;74534 74534 10 LGIHEDSQNRK Unmodified 1295.6582 0.65821178 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 1 By MS/MS 4.33 0.471 2 1 3 28.634 28.64 3;4 0.0027368 5839 20211116_3431_TMUAki_TMT10x_P_F4 73.632 40.685 801740 1223000 156.7 1085100 1008000 1367400 859720 615460 700860 665430 981120 746480 1140700 67278 1120900 962610 1358700 874880 665200 729900 647840 937780 2 2 1 2 2 2 2 2 2 2 2 801740 1223000 156.7 1085100 1008000 1367400 859720 615460 700860 665430 981120 746480 1140700 67278 1120900 962610 1358700 874880 665200 729900 647840 937780 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 77366000 77366000 0 11521 544 10693 61400;61401;61402 74535;74536 74535 2 LGIHEDSTNR Unmodified 1140.5523 0.55234972 553 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 1.49 4 2 2 2 2 8 4 28.925 28.842 2;3 1.0729E-14 8626 20211116_3441_TMUAki_TMT10x_S_F3 231.38 196.08 3224100 5109400 515.31 4629000 3882400 4756400 3397700 2058800 2567000 2477200 3540900 3001700 4765800 234790 4758100 3707700 4777000 3446000 2241900 2682400 2402100 3385600 11 11 1 11 11 11 11 11 11 11 11 2303900 3536700 515.31 3219400 2932900 3849600 2314000 1468600 1865900 1767800 2471300 2144900 3298900 169310 3316100 2794700 3829300 2365600 1622300 1939300 1714200 2365200 8 8 1 8 8 8 8 8 8 8 8 920260 1572700 0 1409600 949460 906830 1083700 590240 701140 709370 1069600 856770 1466900 65479 1442000 913030 947720 1080400 619660 743100 687900 1020400 3 3 0 3 3 3 3 3 3 3 3 1076000000 630240000 445720000 11522 553 10694 61403;61404;61405;61406;61407;61408;61409;61410;61411;61412;61413;61414 74537;74538;74539;74540;74541;74542;74543;74544;74545;74546;74547;74548 74547 12 LGIHEDSTNRR Unmodified 1296.6535 0.65346075 553 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 1 By MS/MS By MS/MS 3.4 1.02 1 2 1 1 4 1 24.841 24.734 4 1.2711E-06 7645 20211116_3441_TMUAki_TMT10x_S_F3 123.79 101.56 6425600 1135800 0 1919300 821850 1626400 715990 581750 544080 632960 637200 5981800 1062800 323050 1898300 776840 1651400 726480 645730 564330 616070 611800 4 4 0 4 4 4 4 4 4 4 4 6360900 1027000 0 1806800 751500 1557200 637310 523630 482930 571120 571820 5921600 961230 318310 1784400 709220 1578600 647640 585980 501210 555830 548860 3 3 0 3 3 3 3 3 3 3 3 64670 108810 0 112560 70353 69141 78686 58113 61143 61838 65382 60209 101550 4741.5 113910 67622 72867 78836 59753 63120 60241 62940 1 1 0 1 1 1 1 1 1 1 1 71045000 54104000 16942000 11523 553 10695 61415;61416;61417;61418;61419 74549;74550;74551 74551 3 LGIIGVVNR Unmodified 939.58655 0.58655038 87 O00429;O00429-2;O00429-4;O00429-3;O00429-5;O00429-9;O00429-8;O00429-6 DNM1L Dynamin-1-like protein yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 56.748 56.479 2 6.1409E-06 18223 20211116_3429_TMUAki_TMT10x_P_F2 163.84 119.15 27969000 46111000 0 49820000 38739000 39318000 31675000 35258000 33620000 32453000 35983000 26039000 43040000 2134800 50406000 36946000 40611000 32559000 35969000 34201000 31811000 34638000 4 4 0 4 4 4 4 4 4 4 4 10930000 16066000 0 18288000 18387000 23252000 12265000 14664000 14714000 13278000 13830000 10175000 15000000 842240 18574000 17465000 23189000 12837000 15301000 14831000 13025000 13369000 2 2 0 2 2 2 2 2 2 2 2 17039000 30045000 0 31532000 20352000 16066000 19410000 20594000 18906000 19175000 22153000 15864000 28041000 1292600 31831000 19480000 17423000 19722000 20668000 19370000 18785000 21269000 2 2 0 2 2 2 2 2 2 2 2 3025500000 1504100000 1521300000 11524 87 10696 61420;61421;61422;61423 74552;74553;74554;74555 74552 4 LGIKPESVQPHRPTTNPNTSK Unmodified 2300.2237 0.22369236 1846 Q16527 CSRP2 Cysteine and glycine-rich protein 2 yes yes 0 0 0 2 By MS/MS By matching 2 0.816 1 1 1 2 1 33.975 33.821 5 3.7197E-14 9059 20211116_3429_TMUAki_TMT10x_P_F2 136.04 121.43 416810 596650 0 946540 1361900 1082300 512720 340060 445610 325180 581770 388000 558050 36488 942940 1283800 1077500 562400 382770 461100 318200 557000 1 1 0 1 1 1 1 1 1 1 1 416810 596650 0 946540 1361900 1082300 512720 340060 445610 325180 581770 388000 558050 36488 942940 1283800 1077500 562400 382770 461100 318200 557000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 119490000 104300000 15192000 11525 1846 10697 61424;61425;61426 74556 74556 1 LGIPDAVSYIK Unmodified 1174.6598 0.6597749 390 O94874;O94874-3;O94874-2 UFL1 E3 UFM1-protein ligase 1 yes no 0 0 0 0 By MS/MS 7 0 1 1 70.922 71.317 2 6.4402E-06 24087 20211116_3435_TMUAki_TMT10x_P_F7 119.68 88.308 5147200 8481900 0 7917800 6744500 12139000 6042900 7097200 7109100 7203600 6949300 4792000 7912400 388630 8180400 6445400 11993000 6199300 7473600 7180000 7031000 6708700 1 1 0 1 1 1 1 1 1 1 1 5147200 8481900 0 7917800 6744500 12139000 6042900 7097200 7109100 7203600 6949300 4792000 7912400 388630 8180400 6445400 11993000 6199300 7473600 7180000 7031000 6708700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 478470000 478470000 0 11526 390 10698 61427 74557 74557 1 LGIQAEPLYR Unmodified 1158.6397 0.63970816 1435 P78559;P78559-2 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 52.598 52.708 2 7.3107E-05 14920 20211116_3445_TMUAki_TMT10x_S_F6 128.27 80.178 5876900 10091000 139080 11245000 6686200 5897400 5254800 9714500 8688900 8939700 8961600 5473000 9419900 628190 11310000 6383500 6423500 5511300 9661200 8698800 8762900 8636500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5876900 10091000 139080 11245000 6686200 5897400 5254800 9714500 8688900 8939700 8961600 5473000 9419900 628190 11310000 6383500 6423500 5511300 9661200 8698800 8762900 8636500 2 2 2 2 2 2 2 2 2 2 2 530660000 231500000 299170000 11527 1435 10699 61428;61429;61430;61431 74558;74559;74560;74561 74560 4 LGIQGSYFCSQECFK Unmodified 1822.8018 0.80184082 1201 P53582 METAP1 Methionine aminopeptidase 1 yes yes 0 0 0 0 By MS/MS 8 0 1 1 66.337 66.477 3 1.8556E-06 20822 20211116_3436_TMUAki_TMT10x_P_F8 91.207 79.733 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11528 1201 10700 61432 74562 74562 1 LGIQTDDKGHIIVDEFQNTNVK Unmodified 2483.2656 0.26561676 466 P00390;P00390-2;P00390-3 GSR Glutathione reductase, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 62.407 62.672 4;5 2.7601E-19 19025 20211116_3445_TMUAki_TMT10x_S_F6 143.15 129.28 17878000 29399000 46234 26957000 25565000 32823000 22130000 25623000 20047000 22098000 23969000 16646000 27423000 1567500 27760000 24425000 32915000 22563000 26309000 20624000 21727000 23001000 6 6 4 6 6 6 6 6 6 6 6 10227000 16891000 38261 15881000 15937000 25591000 15007000 15713000 12225000 13058000 14206000 9522500 15757000 909820 16418000 15257000 25250000 15185000 16395000 12629000 12863000 13643000 4 4 3 4 4 4 4 4 4 4 4 7650800 12508000 7972.8 11075000 9628000 7232300 7122800 9910000 7821800 9039800 9763200 7123600 11666000 657720 11342000 9168600 7665000 7377600 9914700 7995600 8864600 9358100 2 2 1 2 2 2 2 2 2 2 2 4335100000 2618400000 1716600000 11529 466 10701 61433;61434;61435;61436;61437 74563;74564;74565;74566;74567;74568 74567 6 LGIYDADGDGDFDVDDAK Unmodified 1899.801 0.80103201 1566 Q12797;Q12797-10;Q12797-3;Q12797-7;Q12797-4;Q12797-9;Q12797-6;Q12797-11;Q12797-5;Q12797-8;Q12797-2 ASPH Aspartyl/asparaginyl beta-hydroxylase yes no 0 0 0 0 By MS/MS 1 0 1 1 70.978 70.978 3 3.7369E-11 22585 20211116_3428_TMUAki_TMT10x_P_F1 123.97 104.15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11530 1566 10702 61438 74569 74569 1 LGIYTVLFER Unmodified 1209.6758 0.67575932 1502 Q02978;Q02978-2 SLC25A11 Mitochondrial 2-oxoglutarate/malate carrier protein yes no 0 0 0 0 By MS/MS 3 0 1 1 78.75 78.679 2 0.081242 28692 20211116_3441_TMUAki_TMT10x_S_F3 57.859 34.302 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11531 1502 10703 61439 74570 74570 1 LGKDPNTYFIVGTAMVYPEEAEPK Oxidation (M) 2684.3044 0.30437003 1847 Q16531;Q16531-2 DDB1 DNA damage-binding protein 1 yes no 0 0 1 1 By MS/MS By matching 6.5 1.12 1 1 1 1 2 2 70.82 70.841 4 1.0525E-07 22029 20211116_3434_TMUAki_TMT10x_P_F6 94.389 85.68 12971000 21218000 2981.1 17827000 13942000 21578000 17978000 12068000 10304000 13969000 15388000 12077000 19786000 1038300 18482000 13466000 21538000 17788000 12807000 10998000 13565000 14687000 2 2 1 2 2 2 2 2 2 2 2 12971000 21218000 2981.1 17827000 13942000 21578000 17978000 12068000 10304000 13969000 15388000 12077000 19786000 1038300 18482000 13466000 21538000 17788000 12807000 10998000 13565000 14687000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3507000000 1973700000 1533300000 11532 1847 10704 61440;61441;61442;61443 74571 74571 2457 1 LGKDPNTYFIVGTAMVYPEEAEPK Unmodified 2668.3095 0.30945541 1847 Q16531;Q16531-2 DDB1 DNA damage-binding protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 7 0.816 1 1 1 1 2 77.144 77.164 4 2.8614E-07 27115 20211116_3446_TMUAki_TMT10x_S_F7 83.905 76.372 7190600 12741000 842.29 9804300 8800100 18297000 10079000 14270000 14517000 14430000 10519000 6693800 11878000 457630 10336000 8459600 18025000 10294000 14717000 14433000 14087000 10271000 3 3 1 3 3 3 3 3 3 3 3 4698800 8496100 0 6293700 5458700 15552000 7233500 11873000 12076000 11898000 7516900 4373700 7919500 238360 6714600 5268200 15190000 7394400 12258000 11912000 11619000 7392500 2 2 0 2 2 2 2 2 2 2 2 2491800 4245300 842.29 3510600 3341400 2744700 2845200 2396500 2440900 2532500 3001900 2320100 3958600 219270 3621800 3191400 2835500 2899400 2458200 2520800 2467800 2878500 1 1 1 1 1 1 1 1 1 1 1 2409000000 792260000 1616700000 11533 1847 10704 61444;61445;61446 74572;74573;74574 74574 3 LGKPSLVR Unmodified 868.54944 0.54943659 2973;1941 Q9NVI7;Q9NVI7-2;Q9NVI7-3;Q5T9A4;Q5T9A4-3 ATAD3A;ATAD3B ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B no no 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 37.362 37.114 3 0.04036 11847 20211116_3441_TMUAki_TMT10x_S_F3 53.317 32.345 1956900 2985100 0 3089900 2965000 3169600 2207200 2688300 3053300 2634000 2658600 1822000 2785800 165890 3146000 2823300 3213300 2304700 2756000 3055200 2574700 2576800 2 2 0 2 2 2 2 2 2 2 2 1047600 1561800 0 1627000 2111500 2497300 1415900 1437100 1676600 1437700 1411900 975380 1457600 95622 1668200 2006700 2466600 1480700 1514700 1684900 1404100 1370200 1 1 0 1 1 1 1 1 1 1 1 909320 1423300 0 1463000 853560 672310 791270 1251200 1376700 1196300 1246700 846630 1328200 70266 1477800 816590 746680 824000 1241300 1370300 1170600 1206700 1 1 0 1 1 1 1 1 1 1 1 163220000 86418000 76797000 11534 2973;1941 10705 61447;61448;61449 74575;74576;74577 74577 3 LGLDFPNLPYLIDGTHK Unmodified 1912.0094 0.0094490594 839 P28161;P28161-2 GSTM2 Glutathione S-transferase Mu 2 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 78.964 78.951 3 1.9056E-11 25381 20211116_3447_TMUAki_TMT10x_S_F8 136.34 110.36 6995000 12321000 176840 12056000 7415200 10428000 9565100 6037500 6227900 7351700 8384700 6514300 11496000 750620 12293000 7174800 10625000 9486500 6399400 6558300 7125900 8021600 2 2 2 2 2 2 2 2 2 2 2 3580600 6152600 157560 5937000 3009500 6252200 4374500 2885400 3134600 3821600 4014700 3335100 5740200 435700 6076700 2929500 6274200 4327500 3131600 3274400 3693800 3845600 1 1 1 1 1 1 1 1 1 1 1 3414400 6168600 19281 6118900 4405700 4176100 5190600 3152100 3093300 3530100 4370000 3179300 5755800 314930 6216700 4245300 4351100 5159000 3267800 3284000 3432100 4176100 1 1 1 1 1 1 1 1 1 1 1 2349200000 1092500000 1256700000 11535 839 10706 61450;61451 74578;74579 74579 2 LGLDILEVVPISK Unmodified 1394.8385 0.83846755 2153 Q8IX18;Q8IX18-4;Q8IX18-3;Q8IX18-2 DHX40 Probable ATP-dependent RNA helicase DHX40 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 80.646 80.658 3 0.00014135 28519 20211116_3446_TMUAki_TMT10x_S_F7 83.769 64.671 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11536 2153 10707 61452;61453 74580;74581 74581 2 LGLDPTQEDCVATHR Unmodified 1710.7995 0.79953264 1188 P52789 HK2 Hexokinase-2 yes yes 0 0 0 0 By MS/MS By MS/MS 3.25 0.829 1 1 2 2 2 41.149 41.214 3 8.4733E-08 11935 20211116_3430_TMUAki_TMT10x_P_F3 120.54 107.42 1346800 2239500 964.06 2434600 3475800 3744800 1830500 1961500 2436000 1691100 2038500 1253900 2090400 125860 2489500 3290400 3694000 1961500 2076200 2437600 1662800 1978800 2 2 1 2 2 2 2 2 2 2 2 1346800 2239500 964.06 2434600 3475800 3744800 1830500 1961500 2436000 1691100 2038500 1253900 2090400 125860 2489500 3290400 3694000 1961500 2076200 2437600 1662800 1978800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 234740000 234740000 0 11537 1188 10708 61454;61455;61456;61457 74582;74583;74584;74585 74582 4 LGLDYEER Unmodified 993.47673 0.47672516 2593 Q99623;Q99623-2 PHB2 Prohibitin-2 yes no 0 0 0 0 By MS/MS By MS/MS 2.6 1.02 1 1 2 1 1 4 44.389 44.328 2 0.00041005 13599 20211116_3430_TMUAki_TMT10x_P_F3 141.39 85.713 11820000 17821000 48645 22585000 16141000 12597000 11259000 15733000 17412000 12897000 17447000 11006000 16647000 1022400 22555000 15353000 13520000 11867000 15753000 17446000 12713000 16829000 6 6 2 6 6 6 6 6 6 6 6 2289900 3335200 0 4171200 7742100 5264700 2705000 2870200 3408000 2287500 3297600 2132000 3115300 239600 4212600 7295100 5242100 3029000 3021700 3432400 2258100 3184500 1 1 0 1 1 1 1 1 1 1 1 9530400 14486000 48645 18414000 8399400 7332700 8554300 12862000 14004000 10610000 14149000 8873800 13531000 782770 18342000 8058200 8277800 8837600 12731000 14013000 10455000 13645000 5 5 2 5 5 5 5 5 5 5 5 1187300000 437220000 750100000 11538 2593 10709 61458;61459;61460;61461;61462 74586;74587;74588;74589;74590;74591 74586 6 LGLEALAANHQQLFTDGR Unmodified 1953.0068 0.0068232975 3257 Q9Y2Z4 YARS2 Tyrosine--tRNA ligase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 63.543 64 3 2.1996E-10 20985 20211116_3435_TMUAki_TMT10x_P_F7 113.86 73.832 3763000 7604100 129610 6113400 5712100 5524100 3740900 5705900 5845800 5988700 5566600 3504700 7089800 460060 6333200 5435300 5668000 3962800 5800600 5845100 5837200 5378500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3763000 7604100 129610 6113400 5712100 5524100 3740900 5705900 5845800 5988700 5566600 3504700 7089800 460060 6333200 5435300 5668000 3962800 5800600 5845100 5837200 5378500 1 1 1 1 1 1 1 1 1 1 1 1172200000 0 1172200000 11539 3257 10710 61463;61464;61465 74592;74593;74594 74592 3 LGLELGK Unmodified 728.44324 0.44324019 1279;633 P11908;P11908-2;P60891;P21108 PRPS2;PRPS1;PRPS1L1 Ribose-phosphate pyrophosphokinase 2;Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 3 no no 0 0 0 0 By MS/MS 6 0 1 1 55.243 55.332 2 0.038467 16001 20211116_3445_TMUAki_TMT10x_S_F6 69.998 18.211 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11540 633;1279 10711 61466 74595 74595 1 LGLENAEALIR Unmodified 1197.6717 0.67173657 602 P10155;P10155-5;P10155-3;P10155-4;P10155-2 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes no 0 0 0 0 By MS/MS By MS/MS 4.14 1.25 1 1 2 2 1 4 3 65.761 65.683 2 3.4811E-07 19915 20211116_3444_TMUAki_TMT10x_S_F5 139.43 104.71 42311000 70224000 50364 69568000 51140000 69550000 51490000 48464000 47217000 48385000 54928000 39393000 65524000 3397600 71017000 49029000 70380000 52078000 50337000 48495000 47258000 52748000 5 5 1 5 5 5 5 5 5 5 5 26516000 42090000 50364 43272000 32110000 53144000 34851000 29280000 28712000 30002000 33145000 24687000 39279000 2071800 44209000 30844000 52994000 35017000 30996000 29636000 29272000 31836000 3 3 1 3 3 3 3 3 3 3 3 15794000 28134000 0 26296000 19030000 16406000 16640000 19184000 18504000 18382000 21783000 14706000 26245000 1325800 26808000 18185000 17386000 17061000 19341000 18860000 17986000 20912000 2 2 0 2 2 2 2 2 2 2 2 5325900000 2754800000 2571100000 11541 602 10712 61467;61468;61469;61470;61471;61472;61473 74596;74597;74598;74599;74600 74600 5 LGLGGNAPVSIPQQSQSVK Unmodified 1879.0163 0.016325351 2792 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein yes yes 0 0 0 0 By MS/MS By MS/MS 4.75 3.27 1 1 2 2 2 58.098 58.077 3 2.3433E-06 17616 20211116_3440_TMUAki_TMT10x_S_F2 92.633 78.727 7170800 12609000 234860 12603000 10012000 12685000 8369000 10755000 10229000 9531400 9987800 6678500 11765000 853180 12858000 9572900 12874000 8632500 10996000 10317000 9359200 9642300 3 3 3 3 3 3 3 3 3 3 3 4696800 8230000 142840 8052300 7590600 10317000 6362200 6502900 6525700 5955600 6087900 4374200 7678800 563050 8261100 7256000 10285000 6522700 6787800 6616100 5839100 5886400 2 2 2 2 2 2 2 2 2 2 2 2474000 4378500 92019 4550300 2421500 2367800 2006800 4252200 3703600 3575700 3899800 2304200 4086300 290140 4597300 2317000 2589100 2109800 4208000 3700500 3520100 3756000 1 1 1 1 1 1 1 1 1 1 1 1317500000 950200000 367340000 11542 2792 10713 61474;61475;61476;61477 74601;74602;74603;74604 74603 4 LGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSR Oxidation (M) 3562.5265 0.52645623 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 1 0 By MS/MS 1 0 2 2 73.989 73.989 3;4 5.5423E-31 23821 20211116_3428_TMUAki_TMT10x_P_F1 149.52 145.71 2210000 4338400 38400 3494900 2214000 5347000 3077800 3002300 2823200 3057300 3200600 2058000 4045000 187030 3652600 2146900 5280200 3068900 3172500 2896700 2983700 3075800 3 3 2 3 3 3 3 3 3 3 3 2210000 4338400 38400 3494900 2214000 5347000 3077800 3002300 2823200 3057300 3200600 2058000 4045000 187030 3652600 2146900 5280200 3068900 3172500 2896700 2983700 3075800 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1475100000 1475100000 0 11543 544 10714 61478;61479 74605;74606;74607 74605 486 3 LGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSRMEEVD 2 Oxidation (M) 4181.7424 0.7423986 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 2 1 By MS/MS By MS/MS 1.2 0.4 4 1 3 2 65.373 65.308 3;4 4.8497E-07 24843 20211116_3428_TMUAki_TMT10x_P_F1 70.178 68.556 4518600 8730000 24367 7263600 5743700 9086700 6947800 7474100 10993000 8743400 8111700 4207300 8140600 135970 7540900 5537500 9108300 7109700 7718500 10905000 8486900 7914300 6 6 1 6 6 6 6 6 6 6 6 1696900 2920400 24367 2569400 1510300 3717300 1578700 2489300 2733700 2431100 2270300 1579900 2723700 135970 2663100 1449700 3688500 1633500 2591200 2714100 2376800 2204400 3 3 1 3 3 3 3 3 3 3 3 2821700 5809600 0 4694200 4233400 5369400 5369100 4984800 8259600 6312200 5841400 2627300 5416800 0 4877700 4087800 5419700 5476200 5127300 8190400 6110200 5709800 3 3 0 3 3 3 3 3 3 3 3 23653000000 13385000000 10268000000 11544 544 10715 61480;61481;61482;61483;61484 74608;74609;74610;74611;74612;74613 74609 486;487 6 LGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSRMEEVD Oxidation (M) 4165.7475 0.74748397 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 1 1 By MS/MS 1 0 1 1 77.947 77.894 3 4.4182E-07 27394 20211116_3439_TMUAki_TMT10x_S_F1 67.871 66.307 407820 623930 0 591300 583660 444280 744500 267930 328140 322100 640530 379720 582070 0 603330 563680 457700 733880 282930 363130 312350 608220 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 407820 623930 0 591300 583660 444280 744500 267930 328140 322100 640530 379720 582070 0 603330 563680 457700 733880 282930 363130 312350 608220 1 1 0 1 1 1 1 1 1 1 1 952480000 0 952480000 11545 544 10715 61485 74614 74614 486;487 1 LGLGIDEDEVAAEEPNAAVPDEIPPLEGDEDASR Unmodified 3531.6377 0.63766166 553 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 0 By MS/MS By MS/MS 1.88 0.64 11 23 6 29 11 47.363 47.278 3;4 1.725E-60 25751 20211116_3428_TMUAki_TMT10x_P_F1 208.34 202.38 29292000 48892000 99134 43324000 33529000 47358000 41060000 30123000 29975000 32033000 38282000 27274000 45600000 1235300 44651000 32338000 47609000 40912000 31552000 31274000 31206000 36672000 46 53 15 51 47 53 51 48 48 51 48 11939000 20407000 63109 18562000 12337000 25040000 17782000 12966000 12867000 13035000 13570000 11117000 19035000 466540 19163000 11969000 24838000 17600000 13793000 13329000 12728000 13069000 28 35 8 33 29 35 33 30 30 33 30 17353000 28485000 36025 24763000 21192000 22318000 23278000 17156000 17109000 18998000 24712000 16157000 26566000 768780 25488000 20370000 22771000 23312000 17759000 17945000 18478000 23603000 18 18 7 18 18 18 18 18 18 18 18 28466000000 13553000000 14913000000 11546 553 10716 61486;61487;61488;61489;61490;61491;61492;61493;61494;61495;61496;61497;61498;61499;61500;61501;61502;61503;61504;61505;61506;61507;61508;61509;61510;61511;61512;61513;61514;61515;61516;61517;61518;61519;61520;61521;61522;61523;61524;61525 74615;74616;74617;74618;74619;74620;74621;74622;74623;74624;74625;74626;74627;74628;74629;74630;74631;74632;74633;74634;74635;74636;74637;74638;74639;74640;74641;74642;74643;74644;74645;74646;74647;74648;74649;74650;74651;74652;74653;74654;74655;74656;74657;74658;74659;74660;74661;74662;74663;74664;74665;74666;74667;74668;74669 74615 55 LGLGIDEDEVAAEEPNAAVPDEIPPLEGDEDASRMEEVD Oxidation (M) 4150.8536 0.85360403 553 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 1 1 By MS/MS By MS/MS 1.96 0.655 17 41 14 49 23 47.179 47.114 3;4;5 4.6046E-11 8473 20211116_3430_TMUAki_TMT10x_P_F3 84.362 80.692 27706000 48592000 178090 43213000 31138000 41743000 33741000 38779000 39098000 32221000 34746000 25798000 45321000 1121700 44440000 29924000 42281000 33987000 39378000 39385000 31516000 33389000 107 114 19 115 111 116 111 110 111 112 111 14924000 28625000 158660 24932000 13562000 27567000 17551000 22773000 24309000 16726000 19403000 13896000 26696000 797990 25732000 13110000 27545000 17536000 23212000 24260000 16362000 18605000 79 84 14 86 81 86 82 83 82 83 82 12783000 19967000 19428 18282000 17576000 14176000 16190000 16006000 14788000 15495000 15343000 11901000 18625000 323690 18708000 16814000 14736000 16451000 16166000 15126000 15154000 14784000 28 30 5 29 30 30 29 27 29 29 29 94048000000 48442000000 45606000000 11547 553 10717 61526;61527;61528;61529;61530;61531;61532;61533;61534;61535;61536;61537;61538;61539;61540;61541;61542;61543;61544;61545;61546;61547;61548;61549;61550;61551;61552;61553;61554;61555;61556;61557;61558;61559;61560;61561;61562;61563;61564;61565;61566;61567;61568;61569;61570;61571;61572;61573;61574;61575;61576;61577;61578;61579;61580;61581;61582;61583;61584;61585;61586;61587;61588;61589;61590;61591;61592;61593;61594;61595;61596;61597 74670;74671;74672;74673;74674;74675;74676;74677;74678;74679;74680;74681;74682;74683;74684;74685;74686;74687;74688;74689;74690;74691;74692;74693;74694;74695;74696;74697;74698;74699;74700;74701;74702;74703;74704;74705;74706;74707;74708;74709;74710;74711;74712;74713;74714;74715;74716;74717;74718;74719;74720;74721;74722;74723;74724;74725;74726;74727;74728;74729;74730;74731;74732;74733;74734;74735;74736;74737;74738;74739;74740;74741;74742;74743;74744;74745;74746;74747;74748;74749;74750;74751;74752;74753;74754;74755;74756;74757;74758;74759;74760;74761;74762;74763;74764;74765;74766;74767;74768;74769;74770;74771;74772;74773;74774;74775;74776;74777;74778;74779;74780;74781;74782;74783;74784;74785;74786 74745 509 117 LGLGIDEDEVAAEEPNAAVPDEIPPLEGDEDASRMEEVD Unmodified 4134.8587 0.8586894 553 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 1 By MS/MS By MS/MS 1.82 0.555 10 25 3 24 14 49.959 49.887 3;4 2.7177E-24 28008 20211116_3439_TMUAki_TMT10x_S_F1 132 130.58 28887000 48794000 298830 47366000 36476000 33826000 35966000 20329000 16182000 20362000 32226000 26897000 45524000 1817900 48220000 34970000 34991000 35896000 21351000 17607000 19743000 30591000 66 66 21 66 66 66 66 66 65 63 66 8999200 15309000 61668 16168000 8969700 13942000 10292000 5594500 5157500 6914000 10486000 8379300 14288000 369630 16400000 8635600 14153000 10212000 6148900 5660700 6698000 9950700 43 43 13 43 43 43 43 43 43 41 43 19887000 33485000 237160 31199000 27506000 19883000 25673000 14734000 11024000 13448000 21740000 18518000 31236000 1448200 31820000 26335000 20838000 25684000 15202000 11947000 13044000 20640000 23 23 8 23 23 23 23 23 22 22 23 53842000000 25173000000 28669000000 11548 553 10717 61598;61599;61600;61601;61602;61603;61604;61605;61606;61607;61608;61609;61610;61611;61612;61613;61614;61615;61616;61617;61618;61619;61620;61621;61622;61623;61624;61625;61626;61627;61628;61629;61630;61631;61632;61633;61634;61635 74787;74788;74789;74790;74791;74792;74793;74794;74795;74796;74797;74798;74799;74800;74801;74802;74803;74804;74805;74806;74807;74808;74809;74810;74811;74812;74813;74814;74815;74816;74817;74818;74819;74820;74821;74822;74823;74824;74825;74826;74827;74828;74829;74830;74831;74832;74833;74834;74835;74836;74837;74838;74839;74840;74841;74842;74843;74844;74845;74846;74847;74848;74849;74850 74830 64 LGLGLEFQA Unmodified 946.51238 0.51238239 760 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 79.18 79.176 2 0.011692 26376 20211116_3431_TMUAki_TMT10x_P_F4 67.035 54.546 5811400 9667300 62346 9764800 6563700 7709500 7757400 5569500 5519200 6174100 7019100 5411200 9021000 516660 9924100 6325200 7932600 7737000 5788800 5766100 6005000 6724700 3 3 1 3 3 3 3 3 3 3 3 2144200 3357200 0 3593100 1904300 3552500 2573400 2011300 2123200 2322900 2584300 1996400 3133500 164140 3648300 1842100 3586900 2561300 2132100 2196000 2255800 2478700 1 1 0 1 1 1 1 1 1 1 1 3667200 6310100 62346 6171700 4659300 4156900 5184100 3558200 3396100 3851200 4434900 3414800 5887500 352520 6275800 4483000 4345600 5175600 3656700 3570000 3749200 4246000 2 2 1 2 2 2 2 2 2 2 2 961330000 419830000 541510000 11549 760 10718 61636;61637;61638 74851;74852;74853 74851 3 LGLHQVLQDLR Unmodified 1290.7408 0.74081919 279 O60610;O60610-2;O60610-3 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 By MS/MS 8 0 1 1 56.511 56.661 3 1.2973E-14 16819 20211116_3436_TMUAki_TMT10x_P_F8 180.66 146.86 871200 1599500 10780 1670500 1324100 1994100 1274600 1179500 1115200 1212700 1324300 811250 1492800 88617 1704000 1269000 1993200 1290600 1241300 1148900 1183000 1271000 1 1 1 1 1 1 1 1 1 1 1 871200 1599500 10780 1670500 1324100 1994100 1274600 1179500 1115200 1212700 1324300 811250 1492800 88617 1704000 1269000 1993200 1290600 1241300 1148900 1183000 1271000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 446170000 446170000 0 11550 279 10719 61639 74854 74854 1 LGLHSLR Unmodified 794.47627 0.47627165 1301 P61204;P84077;P61204-2 ARF3;ARF1 ADP-ribosylation factor 3;ADP-ribosylation factor 1 yes no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 33.734 33.664 2 0.0017871 7448 20211116_3428_TMUAki_TMT10x_P_F1 133.47 18.883 1841100 2800300 6212.9 2927100 2634200 2492400 1879700 1692000 1851200 1790800 2263800 1714000 2613400 138940 2970600 2505200 2548000 1945300 1763700 1899200 1744900 2171100 3 3 1 3 3 3 3 3 3 3 3 945790 1444700 6212.9 1565700 1913800 1780400 1031400 958750 1062900 1026600 1209700 880550 1348500 82699 1592000 1812200 1782100 1093300 1018300 1085100 999800 1162400 2 2 1 2 2 2 2 2 2 2 2 895290 1355600 0 1361300 720450 712000 848370 733290 788300 764190 1054200 833480 1264900 56243 1378700 693000 765870 851990 745410 814020 745080 1008700 1 1 0 1 1 1 1 1 1 1 1 109120000 64832000 44289000 11551 1301 10720 61640;61641;61642 74855;74856;74857 74855 3 LGLIPIHADPR Unmodified 1200.6979 0.69789175 170 O15160;O15160-2 POLR1C DNA-directed RNA polymerases I and III subunit RPAC1 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 51.549 51.543 3 0.00025067 14761 20211116_3436_TMUAki_TMT10x_P_F8 84.658 58.144 2400900 3709500 9186.1 4234400 3434200 4062500 2539800 3185200 3004300 3081300 3220100 2235500 3463300 216980 4280200 3270600 4129500 2637400 3279600 3043700 3013700 3099700 2 2 1 2 2 2 2 2 2 2 2 1314300 2071800 9186.1 2333700 2429900 3159300 1650800 1839500 1686700 1764700 1744400 1223800 1934200 133150 2374600 2310900 3137900 1716300 1934700 1716400 1726500 1680900 1 1 1 1 1 1 1 1 1 1 1 1086600 1637700 0 1900700 1004300 903150 889000 1345700 1317600 1316700 1475800 1011700 1529100 83828 1905500 959700 991540 921050 1345000 1327300 1287100 1418700 1 1 0 1 1 1 1 1 1 1 1 646210000 367970000 278240000 11552 170 10721 61643;61644 74858;74859 74858 2 LGLIPLISDDIVDK Unmodified 1509.8654 0.86541058 731 P19387 POLR2C DNA-directed RNA polymerase II subunit RPB3 yes yes 0 0 0 0 By MS/MS By MS/MS 5 1.61 1 1 2 1 3 2 4 6 80.743 80.733 2;3 3.3526E-19 28161 20211116_3435_TMUAki_TMT10x_P_F7 145.91 128.1 9129500 14667000 0 15290000 8540000 8544600 9782600 4699300 4664800 5767200 9380500 8497900 13688000 431770 15453000 8199200 9034300 9699500 5004000 5136900 5588600 8903100 4 4 0 4 4 4 4 4 4 4 4 1849400 2789000 0 3174500 972380 2607000 1021600 890370 934080 1166800 1782700 1721600 2603800 95989 3202800 930670 2652300 1031000 1000200 984200 1128200 1693400 1 1 0 1 1 1 1 1 1 1 1 7280000 11878000 0 12115000 7567600 5937600 8761000 3808900 3730700 4600400 7597900 6776300 11085000 335780 12251000 7268500 6382000 8668600 4003800 4152700 4460400 7209700 3 3 0 3 3 3 3 3 3 3 3 1503900000 326360000 1177600000 11553 731 10722 61645;61646;61647;61648;61649;61650;61651;61652;61653;61654 74860;74861;74862;74863;74864;74865;74866;74867 74863 8 LGLLGLANSLAIEGR Unmodified 1495.8722 0.8722273 1161 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 79.615 79.553 2 1.56E-34 29033 20211116_3441_TMUAki_TMT10x_S_F3 237.49 213.46 4232700 6829700 98231 6484400 4758500 6104500 5290100 4236800 4120000 4536900 5180900 3941800 6371600 449830 6633900 4582000 6200300 5301900 4410900 4280300 4418600 4965000 2 2 2 2 2 2 2 2 2 2 2 2334800 3264500 63990 3195500 2082900 3756000 2577000 2169600 2240600 2388000 2737500 2174400 3045900 249680 3273200 2013500 3756200 2577700 2292500 2311800 2323300 2625400 1 1 1 1 1 1 1 1 1 1 1 1897900 3565200 34241 3288900 2675600 2348500 2713000 2067100 1879400 2148900 2443400 1767400 3325700 200150 3360700 2568500 2444200 2724200 2118400 1968400 2095300 2339600 1 1 1 1 1 1 1 1 1 1 1 724290000 261380000 462910000 11554 1161 10723 61655;61656 74868;74869 74869 2 LGLLGLANSLAIEGRK Unmodified 1623.9672 0.96719031 1161 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 1 By MS/MS By matching 5.5 0.5 1 1 1 1 77.021 77.017 3 7.4561E-15 25737 20211116_3433_TMUAki_TMT10x_P_F5 142.57 118.74 6529400 9700000 16873 9798500 5078800 10325000 6382600 6638600 5241700 6361600 6811500 6079600 9051500 536740 9996900 4903600 10403000 6370600 6927400 5438100 6224500 6522200 1 1 1 1 1 1 1 1 1 1 1 6529400 9700000 16873 9798500 5078800 10325000 6382600 6638600 5241700 6361600 6811500 6079600 9051500 536740 9996900 4903600 10403000 6370600 6927400 5438100 6224500 6522200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 862760000 587770000 274990000 11555 1161 10724 61657;61658 74870 74870 1 LGLLGLPAPK Unmodified 977.62735 0.62735256 2574 Q99459 CDC5L Cell division cycle 5-like protein yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 72.774 72.639 2 3.2351E-09 23580 20211116_3431_TMUAki_TMT10x_P_F4 157.52 122.42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11556 2574 10725 61659;61660;61661 74871;74872;74873 74871 3 LGLPPLTPEQQEALQK Unmodified 1760.9672 0.96724989 3124 Q9UHX1-6;Q9UHX1-5;Q9UHX1-4;Q9UHX1-2;Q9UHX1;Q9UHX1-3 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 0 0 0 0 By MS/MS By MS/MS 6 0.756 2 3 2 3 4 68.649 68.752 2;3 4.9254E-43 21619 20211116_3445_TMUAki_TMT10x_S_F6 234.9 207.42 94168000 149040000 429080 179070000 132190000 119740000 115970000 65534000 59090000 72822000 109810000 87678000 139180000 8112300 179670000 126320000 124430000 116720000 69584000 64403000 70821000 104360000 11 11 5 11 11 11 11 11 11 11 11 46541000 71481000 414260 91512000 85865000 85683000 74919000 29268000 28042000 35049000 53458000 43337000 66774000 4731700 91856000 82078000 86380000 75115000 32778000 31481000 33992000 50782000 4 4 2 4 4 4 4 4 4 4 4 47627000 77555000 14813 87557000 46321000 34062000 41055000 36266000 31047000 37773000 56355000 44341000 72405000 3380600 87816000 44246000 38049000 41610000 36806000 32921000 36829000 53580000 7 7 3 7 7 7 7 7 7 7 7 6524200000 3155800000 3368400000 11557 3124 10726 61662;61663;61664;61665;61666;61667;61668 74874;74875;74876;74877;74878;74879;74880;74881;74882;74883;74884 74883 11 LGLQHLR Unmodified 835.50282 0.50282075 1453 P84085 ARF5 ADP-ribosylation factor 5 yes yes 0 0 0 0 By MS/MS By MS/MS 1.2 0.4 4 1 3 2 33.55 33.51 2;3 0.00063682 9311 20211116_3439_TMUAki_TMT10x_S_F1 150.07 104.35 1091700 1802000 15403 1855800 1410200 1455900 1199400 1065200 1161200 1151700 1414400 1016600 1681700 109270 1883400 1347800 1499000 1226500 1105300 1192000 1121300 1356600 4 4 3 4 4 4 4 4 4 4 4 412590 701460 7170.4 701050 777450 836670 480640 375910 444700 481830 524640 384210 654540 45946 717240 738420 833620 501940 408620 456820 466220 503620 2 2 1 2 2 2 2 2 2 2 2 679150 1100500 8232.5 1154800 632710 619190 718780 689290 716500 669910 889810 632420 1027100 63328 1166200 609330 665400 724520 696700 735170 655070 853000 2 2 2 2 2 2 2 2 2 2 2 167560000 80663000 86900000 11558 1453 10727 61669;61670;61671;61672;61673 74885;74886;74887;74888 74887 4 LGLQNDLFSLAR Unmodified 1345.7354 0.73539946 1246 P55786;P55786-2 NPEPPS Puromycin-sensitive aminopeptidase yes no 0 0 0 0 By MS/MS By MS/MS 4.86 3.09 2 1 2 2 3 4 76.337 76.339 2 4.3326E-24 24727 20211116_3428_TMUAki_TMT10x_P_F1 248.14 193.43 58123000 89656000 234240 81161000 60769000 82802000 63925000 55431000 53498000 60170000 65705000 54115000 83627000 4440100 83422000 58320000 83637000 64354000 57882000 55314000 58570000 63006000 9 9 4 9 9 9 9 9 9 9 9 32092000 46807000 38301 42608000 28148000 53784000 31650000 30020000 28937000 33328000 35091000 29878000 43660000 2216100 43931000 27052000 53568000 31837000 31820000 29775000 32414000 33660000 4 4 2 4 4 4 4 4 4 4 4 26031000 42849000 195940 38553000 32621000 29018000 32275000 25412000 24561000 26841000 30615000 24237000 39966000 2224100 39491000 31268000 30069000 32517000 26062000 25539000 26156000 29345000 5 5 2 5 5 5 5 5 5 5 5 6255100000 3090600000 3164500000 11559 1246 10728 61674;61675;61676;61677;61678;61679;61680 74889;74890;74891;74892;74893;74894;74895;74896;74897 74889 9 LGLQYSQGLVSGSNAR Unmodified 1648.8533 0.85328277 3127;3128 Q9UI10;Q9UI10-2;Q9UI10-3 EIF2B4 Translation initiation factor eIF-2B subunit delta no no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 54.244 54.07 3 0.0083925 16009 20211116_3440_TMUAki_TMT10x_S_F2 55.589 19.943 1553500 2532000 24193 2748500 2761500 3353500 2032700 2125000 1957900 1920100 2140300 1446700 2363500 168260 2797700 2631000 3351400 2097600 2216400 2001500 1883700 2059000 1 1 1 1 1 1 1 1 1 1 1 1553500 2532000 24193 2748500 2761500 3353500 2032700 2125000 1957900 1920100 2140300 1446700 2363500 168260 2797700 2631000 3351400 2097600 2216400 2001500 1883700 2059000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 119730000 119730000 0 11560 3127;3128 10729 61681;61682 74898;74899 74899 2 LGLRPVK Unmodified 781.51741 0.51740818 2446 Q96EL3 MRPL53 39S ribosomal protein L53, mitochondrial yes yes 0 0 0 1 By MS/MS 3 0 1 1 37.134 36.887 3 0.024645 11754 20211116_3441_TMUAki_TMT10x_S_F3 71.029 56.511 815980 1267500 0 1188600 817590 735740 864500 466680 490800 404200 789150 759760 1182400 67316 1211400 785100 771410 862870 486190 526250 397330 752030 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 815980 1267500 0 1188600 817590 735740 864500 466680 490800 404200 789150 759760 1182400 67316 1211400 785100 771410 862870 486190 526250 397330 752030 1 1 0 1 1 1 1 1 1 1 1 35617000 0 35617000 11561 2446 10730 61683 74900 74900 1 LGLSTLGELK Unmodified 1029.607 0.60701105 214 O43399;O43399-2;O43399-4;O43399-3;O43399-5;O43399-7;O43399-6 TPD52L2 Tumor protein D54 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 67.018 67.259 2 6.6807E-14 21147 20211116_3436_TMUAki_TMT10x_P_F8 222.42 198.27 42582000 72122000 1057100 74160000 63745000 84235000 54886000 66100000 70003000 60527000 66690000 39656000 67305000 4811900 75662000 60963000 84784000 56604000 67955000 70437000 59343000 64436000 4 4 4 4 4 4 4 4 4 4 4 24801000 41626000 838910 42610000 44016000 66907000 37795000 37499000 42183000 35414000 38754000 23098000 38845000 3107100 43763000 42099000 66001000 38798000 39548000 42601000 34673000 37490000 2 2 2 2 2 2 2 2 2 2 2 17781000 30496000 218200 31550000 19728000 17328000 17091000 28601000 27820000 25112000 27936000 16557000 28460000 1704800 31899000 18863000 18783000 17806000 28406000 27836000 24670000 26945000 2 2 2 2 2 2 2 2 2 2 2 4287100000 2382500000 1904700000 11562 214 10731 61684;61685;61686;61687 74901;74902;74903;74904 74902 4 LGLTFLKPK Unmodified 1015.643 0.64300263 2669 Q9BTW9;Q9BTW9-4;Q9BTW9-5 TBCD Tubulin-specific chaperone D yes no 0 0 0 1 By MS/MS 6 0 1 1 61.539 61.53 3 1.4419E-05 18570 20211116_3445_TMUAki_TMT10x_S_F6 116.3 90.646 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11563 2669 10732 61688 74905 74905 1 LGMENDDTAVQYAIGR Oxidation (M) 1767.8098 0.80976297 1516 Q05048 CSTF1 Cleavage stimulation factor subunit 1 yes yes 0 0 1 0 By MS/MS By MS/MS 3 0 2 1 1 53.979 53.702 3 1.6042E-07 18617 20211116_3441_TMUAki_TMT10x_S_F3 109.35 97.376 4490800 7048400 112890 7358000 5273700 7147600 5279900 4728900 5004000 5522800 5976600 4182200 6578100 488490 7481400 5063700 7240100 5346800 4953800 5137300 5361200 5735300 2 2 2 2 2 2 2 2 2 2 2 2866400 4238900 77809 4516600 3755500 5357100 3577900 2708600 3168900 3146000 3736000 2669500 3956400 322610 4600700 3601200 5346100 3625800 2900700 3261900 3054500 3586400 1 1 1 1 1 1 1 1 1 1 1 1624400 2809500 35081 2841400 1518200 1790500 1702100 2020200 1835000 2376800 2240600 1512800 2621700 165880 2880700 1462500 1894100 1721000 2053100 1875400 2306600 2148900 1 1 1 1 1 1 1 1 1 1 1 414790000 242160000 172640000 11564 1516 10733 61689;61690 74906;74907 74907 2053 2 LGNDFHTNK Unmodified 1044.4989 0.49885759 562 P08708 RPS17 40S ribosomal protein S17 yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 34.374 34.425 3 0.00011824 8520 20211116_3433_TMUAki_TMT10x_P_F5 128.81 80.25 7656800 11844000 11980 10686000 8379100 9265200 6938100 3819400 4932000 4146200 7228100 7128600 11047000 562470 10962000 7992700 9404000 7050800 4167900 5186800 4035900 6901600 3 3 1 3 3 3 3 3 3 3 3 6211600 9513000 0 8537000 7177000 8257200 5459900 3111100 4027800 3310700 5774100 5782900 8873000 434900 8773900 6832400 8313500 5583700 3428900 4222200 3225200 5516000 2 2 0 2 2 2 2 2 2 2 2 1445200 2330800 11980 2148600 1202100 1008000 1478200 708260 904240 835490 1454000 1345700 2174200 127580 2187800 1160300 1090500 1467200 739050 964530 810740 1385600 1 1 1 1 1 1 1 1 1 1 1 388060000 297790000 90271000 11565 562 10734 61691;61692;61693 74908;74909;74910 74909 3 LGNDFMGITLASSQAVSNAR Unmodified 2051.0106 0.010588046 2862 Q9HC38-2;Q9HC38;Q9HC38-3 GLOD4 Glyoxalase domain-containing protein 4 yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 76.544 76.505 3 9.2322E-19 25071 20211116_3440_TMUAki_TMT10x_S_F2 156.29 143.06 10508000 18211000 129120 16675000 12568000 14429000 13048000 9665900 8725200 10023000 12388000 9784600 16987000 998840 17086000 12069000 14731000 13077000 10079000 9195600 9774500 11837000 4 4 3 4 4 4 4 4 4 4 4 5434300 9129700 91855 8384200 5347300 9050000 6372300 4602100 3909600 4862600 6117100 5060400 8516200 513410 8615900 5157100 9078500 6333900 4911300 4163400 4738300 5832600 2 2 1 2 2 2 2 2 2 2 2 5073400 9080800 37268 8290400 7220700 5379500 6676000 5063800 4815700 5160600 6271000 4724200 8470400 485430 8469900 6912100 5652700 6742600 5167400 5032200 5036100 6004400 2 2 2 2 2 2 2 2 2 2 2 2443800000 1528700000 915110000 11566 2862 10735 61694;61695;61696 74911;74912;74913;74914 74913 4 LGNDFMGITLASSQAVSNAR Oxidation (M) 2067.0055 0.0055026685 2862 Q9HC38-2;Q9HC38;Q9HC38-3 GLOD4 Glyoxalase domain-containing protein 4 yes no 0 0 1 0 By MS/MS By MS/MS 8 0 3 2 1 65.67 65.756 2;3 2.3285E-41 20604 20211116_3436_TMUAki_TMT10x_P_F8 212.93 200.3 12064000 21231000 370550 19626000 14191000 18781000 14301000 15928000 13859000 15810000 17150000 11235000 19804000 1353000 20123000 13631000 19121000 14486000 16335000 14235000 15446000 16442000 6 6 4 6 6 6 6 6 6 6 6 4482800 8119500 196430 7911500 5016600 10753000 5932100 6055100 5579300 6615600 6553000 4175200 7575600 539930 8128300 4843600 10674000 5958400 6410300 5726000 6438100 6291300 3 3 1 3 3 3 3 3 3 3 3 7580700 13111000 174120 11715000 9174800 8027500 8368600 9873400 8279700 9194500 10597000 7059700 12229000 813090 11994000 8787500 8446800 8528000 9925100 8509300 9007800 10151000 3 3 3 3 3 3 3 3 3 3 3 3583100000 2446600000 1136600000 11567 2862 10735 61697;61698;61699 74915;74916;74917;74918;74919;74920 74917 2986 6 LGNGINIIVATPGR Unmodified 1393.8041 0.80414773 2976 Q9NVP1 DDX18 ATP-dependent RNA helicase DDX18 yes yes 0 0 0 0 By MS/MS By MS/MS 2.33 0.943 1 2 2 1 63.318 62.956 2 1.7152E-29 22418 20211116_3441_TMUAki_TMT10x_S_F3 210.95 179.58 5168200 7950800 0 8005800 5616500 6999500 5484700 5929500 5871500 5595000 6303400 4811200 7419100 311980 8148300 5374100 7168600 5582300 6072700 5971600 5478200 6067300 2 2 0 2 2 2 2 2 2 2 2 2139300 3170400 0 3254900 2376000 4287400 2438500 2521900 2715000 2412000 2522100 1991200 2958600 95359 3330000 2274200 4264300 2478700 2649900 2743100 2360200 2439000 1 1 0 1 1 1 1 1 1 1 1 3029000 4780400 0 4750900 3240600 2712100 3046300 3407600 3156500 3183000 3781300 2820000 4460500 216630 4818300 3099900 2904300 3103500 3422800 3228600 3117900 3628300 1 1 0 1 1 1 1 1 1 1 1 636460000 327700000 308760000 11568 2976 10736 61700;61701;61702 74921;74922;74923 74923 3 LGNPIVPLNIR Unmodified 1204.7292 0.72919187 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 64.899 64.548 2 3.4617E-06 23085 20211116_3441_TMUAki_TMT10x_S_F3 121.58 106.5 13515000 22467000 109650 23639000 17169000 22737000 16849000 14847000 13332000 14544000 16899000 12584000 20969000 1273800 24020000 16461000 23041000 16998000 15484000 13843000 14217000 16191000 3 3 3 3 3 3 3 3 3 3 3 9218400 15064000 82246 15699000 13160000 19196000 12721000 10405000 9164200 9792300 11665000 8583900 14059000 896130 16023000 12613000 19142000 12817000 11004000 9567400 9588900 11175000 2 2 2 2 2 2 2 2 2 2 2 4296300 7402900 27401 7939800 4009100 3540700 4127700 4442000 4167700 4752000 5234100 4000500 6909700 377710 7996200 3848800 3898600 4181900 4480100 4276000 4628300 5016100 1 1 1 1 1 1 1 1 1 1 1 1411400000 896500000 514880000 11569 1433 10737 61703;61704;61705 74924;74925;74926 74926 3 LGNPTRSEDLLDYGPFR Unmodified 1948.9643 0.96428978 494 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 64.207 64.193 3 2.5005E-15 19647 20211116_3445_TMUAki_TMT10x_S_F6 146.81 122.02 19114000 31887000 169970 29052000 23488000 29790000 21072000 23779000 21390000 21373000 24752000 17798000 29744000 1746700 29850000 22467000 30168000 21510000 24409000 21866000 20973000 23773000 5 5 3 5 5 5 5 5 5 5 5 11539000 18668000 143100 17456000 12218000 21963000 13053000 14283000 12838000 12284000 14235000 10745000 17415000 1045100 17961000 11741000 21923000 13190000 14849000 13119000 12079000 13689000 3 3 2 3 3 3 3 3 3 3 3 7574900 13219000 26870 11596000 11270000 7827500 8018400 9496700 8552300 9088700 10517000 7053100 12329000 701610 11889000 10726000 8244200 8320000 9559200 8746800 8893300 10085000 2 2 1 2 2 2 2 2 2 2 2 1327200000 755790000 571430000 11570 494 10738 61706;61707 74927;74928;74929;74930;74931 74931 5 LGNYAGAVQDCER Unmodified 1451.6463 0.64632646 242 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 3 2 1 41.797 41.939 2;3 5.5382E-06 11219 20211116_3431_TMUAki_TMT10x_P_F4 103.44 84.197 931900 1418000 39049 1787400 741430 666140 781090 1371900 1388300 1027200 1346100 867980 1324500 110990 1780600 714280 763650 809010 1349000 1384300 1017400 1299800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 931900 1418000 39049 1787400 741430 666140 781090 1371900 1388300 1027200 1346100 867980 1324500 110990 1780600 714280 763650 809010 1349000 1384300 1017400 1299800 1 1 1 1 1 1 1 1 1 1 1 92584000 47003000 45581000 11571 242 10739 61708;61709;61710 74932;74933 74932 2 LGPALATGNVVVMK Oxidation (M) 1384.7748 0.77482144 500 P05091;P05091-2 ALDH2 Aldehyde dehydrogenase, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 59.44 59.243 3 0.00012308 19387 20211116_3429_TMUAki_TMT10x_P_F2 84.718 70.723 15237000 26996000 148730 25957000 21798000 27630000 18653000 24106000 22609000 22202000 23305000 14188000 25187000 1475000 26578000 20829000 27965000 19208000 24630000 22853000 21762000 22460000 6 6 4 6 6 6 6 6 6 6 6 7339800 12708000 73173 12041000 13012000 18381000 9934600 11448000 11348000 10177000 10789000 6834500 11855000 749480 12426000 12403000 18178000 10282000 11952000 11463000 9991700 10425000 3 3 2 3 3 3 3 3 3 3 3 7896800 14289000 75557 13916000 8785500 9248800 8718900 12658000 11261000 12025000 12516000 7353200 13332000 725520 14153000 8426100 9786500 8926200 12679000 11390000 11771000 12035000 3 3 2 3 3 3 3 3 3 3 3 1581400000 1117900000 463460000 11572 500 10740 61711;61712;61713;61714 74934;74935;74936;74937;74938;74939 74936 404 6 LGPASAADTGSEAKPGALAEGAAEPEPQR Unmodified 2747.3362 0.33621552 3016 Q9NYB0 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 3.44 0.831 1 4 3 1 5 4 47.644 47.596 3;4 6.7837E-121 16101 20211116_3441_TMUAki_TMT10x_S_F3 298.97 291.15 8618300 15313000 41056 18857000 17790000 21322000 12303000 16066000 16769000 14480000 14730000 8024200 14302000 809990 19024000 16918000 21451000 12905000 16553000 16792000 14207000 14272000 8 8 4 8 8 8 8 8 8 8 8 5709700 9964100 34528 12568000 15287000 18672000 10188000 10605000 10888000 9547300 9439800 5316100 9307300 586420 12729000 14528000 18464000 10622000 11158000 10994000 9368000 9151100 5 5 2 5 5 5 5 5 5 5 5 2908600 5349100 6528.9 6288500 2502700 2649600 2115400 5461700 5881300 4932500 5289900 2708100 4994800 223580 6294500 2389200 2986800 2282600 5395400 5797400 4839200 5121300 3 3 2 3 3 3 3 3 3 3 3 3134000000 1998200000 1135800000 11573 3016 10741 61715;61716;61717;61718;61719;61720;61721;61722;61723 74940;74941;74942;74943;74944;74945;74946;74947;74948 74946 9 LGPDDVSVDIDAIRR Unmodified 1639.8529 0.85294842 1517 Q05086;Q05086-2;Q05086-3 UBE3A Ubiquitin-protein ligase E3A yes no 0 0 0 1 By matching By MS/MS 3.67 0.471 1 2 1 2 58.256 58.133 3 4.146E-20 18187 20211116_3442_TMUAki_TMT10x_S_F4 177.88 156.93 4067000 7200000 49860 6635300 4828300 4345600 4394900 5685600 5433800 5391800 5734300 3787200 6716200 394320 6774700 4621700 4598400 4512700 5704300 5493200 5278000 5522300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4067000 7200000 49860 6635300 4828300 4345600 4394900 5685600 5433800 5391800 5734300 3787200 6716200 394320 6774700 4621700 4598400 4512700 5704300 5493200 5278000 5522300 2 2 2 2 2 2 2 2 2 2 2 1229700000 436300000 793360000 11574 1517 10742 61724;61725;61726 74949;74950 74950 2 LGPGGLDPVEVYESLPEELQK Unmodified 2268.1525 0.15254406 1851 Q16543 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 1.55 1 2 4 2 2 1 6 6 80.211 80.198 2;3 4.3236E-35 26170 20211116_3445_TMUAki_TMT10x_S_F6 188.71 165.8 40426000 69053000 403820 59145000 47899000 65963000 52557000 38060000 37641000 41379000 50198000 37642000 64396000 3599000 61140000 46054000 66152000 52605000 40204000 39391000 40277000 48036000 13 13 6 13 13 13 13 13 13 13 13 22466000 37463000 295210 32013000 20788000 42039000 25964000 20725000 20739000 23235000 27238000 20919000 34937000 1996200 33193000 20073000 41729000 25904000 22222000 21558000 22589000 26074000 8 8 3 8 8 8 8 8 8 8 8 17960000 31589000 108600 27132000 27111000 23925000 26592000 17335000 16902000 18144000 22960000 16723000 29460000 1602800 27946000 25981000 24423000 26701000 17982000 17834000 17687000 21962000 5 5 3 5 5 5 5 5 5 5 5 12579000000 6067800000 6511600000 11575 1851 10743 61727;61728;61729;61730;61731;61732;61733;61734;61735;61736;61737;61738 74951;74952;74953;74954;74955;74956;74957;74958;74959;74960;74961;74962;74963;74964;74965;74966 74965 16 LGPGKPGLK Unmodified 865.53854 0.53853756 1857 Q16637;Q16637-3 SMN1 Survival motor neuron protein yes no 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 39.118 38.969 3 0.043015 12638 20211116_3441_TMUAki_TMT10x_S_F3 56.916 17.768 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11576 1857 10744 61739;61740;61741 74967;74968;74969 74969 3 LGPLFSLLNENHR Unmodified 1508.81 0.80996139 1843 Q16401;Q16401-2 PSMD5 26S proteasome non-ATPase regulatory subunit 5 yes no 0 0 0 0 By MS/MS 3 0 1 1 75.725 75.539 3 9.9449E-19 27456 20211116_3441_TMUAki_TMT10x_S_F3 157.03 144.81 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11577 1843 10745 61742 74970 74970 1 LGPLLDILADSR Unmodified 1281.7293 0.72925145 1660 Q13724;Q13724-2 MOGS Mannosyl-oligosaccharide glucosidase yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 80.615 80.635 2 1.6501E-05 28100 20211116_3435_TMUAki_TMT10x_P_F7 102.42 72.105 5218300 9049200 96177 8586400 5958800 9718300 7318800 5586000 5610800 6518300 6667600 4859400 8442100 532640 8809200 5753600 9737700 7299800 5915900 5820300 6327700 6399300 3 3 3 3 3 3 3 3 3 3 3 3630700 6138600 51021 6076100 3893300 7112600 4665100 3745600 3823400 4437300 4508400 3381000 5727700 352240 6218500 3755600 7106300 4665600 3998900 3950800 4305200 4327900 2 2 2 2 2 2 2 2 2 2 2 1587500 2910600 45156 2510300 2065600 2605700 2653700 1840400 1787400 2080900 2159300 1478500 2714400 180400 2590700 1998100 2631400 2634200 1917000 1869500 2022400 2071500 1 1 1 1 1 1 1 1 1 1 1 1211600000 699810000 511740000 11578 1660 10746 61743;61744;61745 74971;74972;74973 74971 3 LGPLLEQEIPQSVPGVQTLLGAGR Unmodified 2471.3748 0.37477328 2316 Q8WWQ0 PHIP PH-interacting protein yes yes 0 0 0 0 By MS/MS 1 0 1 1 80.467 80.435 3 0.052205 28378 20211116_3439_TMUAki_TMT10x_S_F1 34.474 20.433 2092400 3055800 0 3111400 2190900 1560900 2234000 1200000 1181400 1259500 2053200 1948200 2851600 166040 3147000 2101300 1677700 2231200 1240100 1278800 1227700 1953600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2092400 3055800 0 3111400 2190900 1560900 2234000 1200000 1181400 1259500 2053200 1948200 2851600 166040 3147000 2101300 1677700 2231200 1240100 1278800 1227700 1953600 1 1 0 1 1 1 1 1 1 1 1 406550000 0 406550000 11579 2316 10747 61746 74974 74974 1 LGPPGLPPLPGPK Unmodified 1238.7387 0.73869393 1820 Q15637-5 SF1 Splicing factor 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 3 2 1 68.333 68.058 2;3 6.5717E-06 22991 20211116_3429_TMUAki_TMT10x_P_F2 109.71 91.099 9199000 14746000 135420 14154000 9915500 16517000 10945000 9610400 9402300 9967600 10915000 8566200 13758000 898900 14517000 9541600 16525000 11001000 10130000 9686400 9720100 10482000 4 4 4 4 4 4 4 4 4 4 4 7917500 12639000 127730 12064000 8418100 15293000 9475100 8334100 8087100 8526300 9435500 7372900 11791000 782460 12396000 8106000 15224000 9512800 8830500 8335800 8319300 9060300 3 3 3 3 3 3 3 3 3 3 3 1281500 2107600 7693 2089800 1497400 1223600 1470200 1276300 1315200 1441200 1479100 1193300 1966600 116440 2120200 1435600 1301100 1487900 1299900 1350600 1400800 1421800 1 1 1 1 1 1 1 1 1 1 1 1106500000 834960000 271510000 11580 1820 10748 61747;61748;61749 74975;74976;74977;74978 74977 4 LGPSDYFGEIALLMNRPR Oxidation (M) 2064.0462 0.046245271 611 P10644 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed yes yes 0 0 1 1 By MS/MS 1.5 0.5 1 1 2 75.275 75.21 3 0.012554 24508 20211116_3440_TMUAki_TMT10x_S_F2 50.831 32.693 4769000 8143600 0 6473900 6668500 6322800 6139900 6021100 6008500 6096300 6975500 4439900 7592600 355720 6720100 6376500 6443800 6251500 6139300 6152700 5950900 6699000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4769000 8143600 0 6473900 6668500 6322800 6139900 6021100 6008500 6096300 6975500 4439900 7592600 355720 6720100 6376500 6443800 6251500 6139300 6152700 5950900 6699000 2 2 0 2 2 2 2 2 2 2 2 1458700000 0 1458700000 11581 611 10749 61750;61751 74979 74979 593 1 LGPSDYFGEIALLMNRPR Unmodified 2048.0513 0.051330649 611 P10644 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed yes yes 0 0 0 1 By matching By MS/MS 3 0 2 1 1 79.152 79.08 3 9.5036E-24 28853 20211116_3441_TMUAki_TMT10x_S_F3 172.24 151 2556100 3525700 0 3939100 3145700 2341200 3015100 1360700 1159600 1663500 2317100 2379900 3291400 214030 3965500 3012600 2461600 3007700 1442000 1301900 1612200 2199400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2556100 3525700 0 3939100 3145700 2341200 3015100 1360700 1159600 1663500 2317100 2379900 3291400 214030 3965500 3012600 2461600 3007700 1442000 1301900 1612200 2199400 1 1 0 1 1 1 1 1 1 1 1 1118900000 361170000 757720000 11582 611 10749 61752;61753 74980 74980 1 LGPSVVGLAR Unmodified 967.58147 0.581465 1726 Q14690 PDCD11 Protein RRP5 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 2 4 4 2 50.887 50.615 2 4.6634E-09 14229 20211116_3428_TMUAki_TMT10x_P_F1 153.08 100.29 1887700 2878700 11330 2930400 1889200 1826700 1571400 2747200 2576400 2504500 2463400 1757700 2686300 167080 2969400 1804100 1949700 1641700 2739400 2573100 2456000 2379800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1887700 2878700 11330 2930400 1889200 1826700 1571400 2747200 2576400 2504500 2463400 1757700 2686300 167080 2969400 1804100 1949700 1641700 2739400 2573100 2456000 2379800 1 1 1 1 1 1 1 1 1 1 1 125800000 0 125800000 11583 1726 10750 61754;61755;61756;61757;61758;61759 74981;74982;74983;74984;74985;74986 74981 6 LGQGVLVQVSPSLVK Unmodified 1522.9083 0.90827845 1667 Q13868;Q13868-3 EXOSC2 Exosome complex component RRP4 yes no 0 0 0 0 By MS/MS 2 0 1 1 70.826 70.543 3 0.00011402 23977 20211116_3429_TMUAki_TMT10x_P_F2 80.632 60.303 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11584 1667 10751 61760 74987 74987 1 LGQHAHPFFFTIPQNLPCSVTLQPGPEDTGK Unmodified 3432.6925 0.69249538 900 P32121;P32121-5;P32121-2;P32121-3 ARRB2 Beta-arrestin-2 yes no 0 0 0 0 By MS/MS 2 0 1 1 74.536 74.466 4 1.6132E-10 24214 20211116_3440_TMUAki_TMT10x_S_F2 94.721 88.927 6277500 10445000 88961 9533800 8341200 6895500 7856600 6633700 6447800 7499900 8392400 5845400 9742800 599860 9751000 7989100 7181500 7951000 6783800 6690200 7289100 8035600 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6277500 10445000 88961 9533800 8341200 6895500 7856600 6633700 6447800 7499900 8392400 5845400 9742800 599860 9751000 7989100 7181500 7951000 6783800 6690200 7289100 8035600 3 3 2 3 3 3 3 3 3 3 3 382270000 0 382270000 11585 900 10752 61761 74988;74989;74990 74990 3 LGQSDPAPLQHQMDIYQK Oxidation (M) 2083.9997 0.99968901 853 P29401;P29401-2 TKT Transketolase yes no 0 0 1 0 By MS/MS 5 0 1 1 45.579 45.721 3 0.00019218 12937 20211116_3433_TMUAki_TMT10x_P_F5 67.418 50.538 881330 1514000 28462 1811600 2239600 2621400 1319300 1404900 1618300 1221500 1319800 820820 1413900 118620 1839200 2126000 2593200 1395600 1484300 1622700 1200500 1282400 1 1 1 1 1 1 1 1 1 1 1 881330 1514000 28462 1811600 2239600 2621400 1319300 1404900 1618300 1221500 1319800 820820 1413900 118620 1839200 2126000 2593200 1395600 1484300 1622700 1200500 1282400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 404010000 404010000 0 11586 853 10753 61762 74991 74991 1019 1 LGQVFVK Unmodified 789.47487 0.47487467 3181 Q9UMN6 KMT2B Histone-lysine N-methyltransferase 2B yes yes 0 0 0 0 By MS/MS 3 0 2 2 59.362 59.105 2 0.097114 19802 20211116_3430_TMUAki_TMT10x_P_F3 59.205 5.0003 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11587 3181 10754 61763;61764 74992;74993 74993 2 LGRIEADSESQEDIIR Unmodified 1829.9119 0.91191986 1250 P55957;P55957-2 BID BH3-interacting domain death agonist;BH3-interacting domain death agonist p15;BH3-interacting domain death agonist p13;BH3-interacting domain death agonist p11 yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 46.173 46.013 3 2.6162E-45 12650 20211116_3440_TMUAki_TMT10x_S_F2 205.12 183.57 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11588 1250 10755 61765;61766 74994;74995 74995 2 LGSAVVTRGDECGLALGR Unmodified 1829.9418 0.9417802 1229 P54886;P54886-2 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes no 0 0 0 1 By MS/MS By MS/MS 6 0 3 2 1 48.524 48.651 3 6.265E-08 13226 20211116_3445_TMUAki_TMT10x_S_F6 102.75 76.768 1833200 2858000 55160 3273600 1931400 1515600 1225100 2856600 2402100 2059400 2390100 1707300 2668400 204770 3284000 1837500 1682600 1316100 2812900 2391800 2044100 2306000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1833200 2858000 55160 3273600 1931400 1515600 1225100 2856600 2402100 2059400 2390100 1707300 2668400 204770 3284000 1837500 1682600 1316100 2812900 2391800 2044100 2306000 1 1 1 1 1 1 1 1 1 1 1 696420000 504730000 191690000 11589 1229 10756 61767;61768;61769 74996;74997 74997 2 LGSFPVR Unmodified 774.43882 0.43882351 2300 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 yes yes 0 0 0 0 By MS/MS 1 0 1 1 45.877 45.656 2 0.031814 14342 20211116_3439_TMUAki_TMT10x_S_F1 78.994 3.8662 1386200 2258900 26502 2547700 1310900 1235500 1351800 1646000 1638100 1584700 1872500 1290900 2108900 138570 2559000 1259600 1348800 1377900 1651000 1662300 1550200 1799100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1386200 2258900 26502 2547700 1310900 1235500 1351800 1646000 1638100 1584700 1872500 1290900 2108900 138570 2559000 1259600 1348800 1377900 1651000 1662300 1550200 1799100 1 1 1 1 1 1 1 1 1 1 1 119790000 0 119790000 11590 2300 10757 61770 74998 74998 1 LGSIAEIDLGVPPPVMK Oxidation (M) 1750.9539 0.95390802 2715 Q9BXP5;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3 SRRT Serrate RNA effector molecule homolog yes no 0 0 1 0 By MS/MS By MS/MS 7 0 2 1 1 77.52 77.589 3 0.00012908 26837 20211116_3435_TMUAki_TMT10x_P_F7 77.746 64.979 6143500 11403000 80838 9668700 7600200 9953600 7793000 6762900 5751500 7390600 7783600 5720700 10634000 587000 9990500 7296000 10051000 7831500 7055800 6012600 7192200 7445700 2 2 1 2 2 2 2 2 2 2 2 3066900 5640400 80838 4430100 3172400 6304600 3912700 3277300 2982700 3650900 3769000 2856200 5258500 331080 4633000 3065400 6239100 3901300 3496100 3103000 3550200 3611500 1 1 1 1 1 1 1 1 1 1 1 3076600 5762500 0 5238600 4427800 3649000 3880300 3485500 2768700 3739700 4014600 2864500 5375100 255920 5357500 4230700 3811700 3930200 3559700 2909600 3641900 3834200 1 1 0 1 1 1 1 1 1 1 1 1178500000 593700000 584780000 11591 2715 10758 61771;61772 74999;75000 74999 2917 2 LGSLVDEFK Unmodified 1006.5335 0.53351176 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 By MS/MS By MS/MS 5.22 1.31 1 2 2 2 2 5 4 71.991 72.032 2 6.1258E-06 22448 20211116_3434_TMUAki_TMT10x_P_F6 163.15 106.6 87408000 154100000 895330 112200000 129950000 222380000 129180000 205590000 172780000 162250000 152690000 81391000 143640000 8508900 119070000 124620000 219370000 132420000 208580000 173160000 160250000 147920000 11 11 7 11 11 11 11 11 11 11 11 57639000 98142000 609200 71373000 80006000 174960000 88218000 134170000 110030000 104900000 97140000 53671000 91477000 5522200 76252000 76947000 170930000 89729000 137600000 110520000 103660000 94107000 8 8 5 8 8 8 8 8 8 8 8 29769000 55959000 286130 40824000 49940000 47420000 40963000 71417000 62754000 57349000 55552000 27720000 52159000 2986700 42814000 47675000 48441000 42695000 70980000 62633000 56590000 53812000 3 3 2 3 3 3 3 3 3 3 3 5879400000 3669800000 2209700000 11592 647 10759 61773;61774;61775;61776;61777;61778;61779;61780;61781 75001;75002;75003;75004;75005;75006;75007;75008;75009;75010;75011;75012 75007 12 LGSLVENNER Unmodified 1129.5728 0.57275081 2588 Q99613;Q99613-2;B5ME19 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 42.694 42.558 2 0.0017082 14207 20211116_3441_TMUAki_TMT10x_S_F3 85.622 66.644 1791900 2800400 0 3224600 3157600 2624600 1972900 2023600 2254800 1731400 2356500 1668100 2614600 125470 3250700 2995200 2697300 2071900 2079000 2285200 1703000 2270100 2 2 0 2 2 2 2 2 2 2 2 1004200 1553200 0 1840100 2445800 2064200 1206600 1017300 1233900 932240 1262800 934880 1450400 86685 1860300 2312900 2065500 1289500 1084600 1255100 913980 1217200 1 1 0 1 1 1 1 1 1 1 1 787680 1247200 0 1384500 711840 560470 766340 1006300 1020900 799130 1093800 733210 1164200 38790 1390400 682270 631820 782360 994450 1030100 789010 1052900 1 1 0 1 1 1 1 1 1 1 1 74559000 34978000 39581000 11593 2588 10760 61782;61783 75013;75014 75014 2 LGSPDYGNSALLSLPGYRPTTR Unmodified 2334.1968 0.19680891 1741 Q14980;Q14980-2;Q14980-5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 2.6 0.49 2 3 2 3 63.997 63.652 3;4 4.8377E-56 19854 20211116_3440_TMUAki_TMT10x_S_F2 234.23 206.62 21475000 35376000 0 36053000 26720000 31367000 24787000 25077000 23855000 24626000 27692000 19992000 33012000 1506300 36662000 25549000 32103000 25214000 25800000 24445000 24069000 26595000 8 8 0 8 8 8 8 8 8 8 8 9499000 15087000 0 15849000 11469000 19388000 11713000 10787000 10488000 10988000 11796000 8843200 14081000 645960 16168000 10992000 19340000 11830000 11408000 10769000 10723000 11339000 3 3 0 3 3 3 3 3 3 3 3 11976000 20289000 0 20204000 15251000 11979000 13074000 14289000 13367000 13638000 15896000 11149000 18932000 860370 20494000 14557000 12763000 13384000 14392000 13676000 13346000 15256000 5 5 0 5 5 5 5 5 5 5 5 8367500000 4359400000 4008100000 11594 1741 10761 61784;61785;61786;61787;61788 75015;75016;75017;75018;75019;75020;75021;75022 75018 8 LGSSSLTNIPEEVREHVK Unmodified 1994.0433 0.043268383 1998 Q6P3W7 SCYL2 SCY1-like protein 2 yes yes 0 0 0 1 By MS/MS 6 0 1 1 57.098 57.168 4 7.8234E-06 16403 20211116_3434_TMUAki_TMT10x_P_F6 91.401 73.036 2533400 3816500 0 3952200 3773600 5885900 3203000 3807600 3400000 3155300 3381100 2358700 3561700 214030 4051200 3603000 5830200 3284800 3956700 3449600 3108500 3262200 1 1 0 1 1 1 1 1 1 1 1 2533400 3816500 0 3952200 3773600 5885900 3203000 3807600 3400000 3155300 3381100 2358700 3561700 214030 4051200 3603000 5830200 3284800 3956700 3449600 3108500 3262200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 336240000 336240000 0 11595 1998 10762 61789 75023 75023 1 LGSTVFVANLDYK Unmodified 1425.7504 0.75038083 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 2 1 71.751 71.71 2;3 9.6671E-15 23070 20211116_3436_TMUAki_TMT10x_P_F8 174.42 132.31 16705000 27914000 43713 27114000 17698000 25360000 20540000 14703000 16504000 16981000 19059000 15552000 26044000 1223300 27691000 17029000 25704000 20561000 15555000 17057000 16490000 18307000 5 5 1 5 5 5 5 5 5 5 5 9859300 16695000 0 16099000 10913000 18387000 12553000 8535600 9744500 10059000 11170000 9178400 15576000 638540 16500000 10492000 18369000 12561000 9221200 10087000 9761600 10731000 3 3 0 3 3 3 3 3 3 3 3 6845500 11219000 43713 11015000 6784800 6973100 7986200 6167400 6759500 6921500 7889100 6374000 10468000 584780 11191000 6537000 7334900 8000000 6333800 6970400 6728800 7575300 2 2 1 2 2 2 2 2 2 2 2 1853400000 1304900000 548510000 11596 1171 10763 61790;61791;61792 75024;75025;75026;75027;75028 75026 5 LGTALMIR Oxidation (M) 889.50552 0.50552287 3368 yes yes 0 0 1 0 By MS/MS By MS/MS 6 0 3 2 1 57.181 57.246 2 0.076969 16471 20211116_3434_TMUAki_TMT10x_P_F6 58.167 12.152 + 14243000 24007000 0 24921000 18206000 24702000 18040000 18222000 24881000 22723000 21082000 13261000 22405000 1071700 25356000 17442000 25032000 18519000 18988000 24878000 22007000 20454000 3 3 0 3 3 3 3 3 3 3 3 7638400 11799000 0 12091000 11856000 14775000 9090600 9646100 11597000 10020000 9940100 7111600 11011000 634420 12354000 11295000 14771000 9443100 10077000 11630000 9770800 9640100 2 2 0 2 2 2 2 2 2 2 2 6605000 12208000 0 12830000 6350200 9927000 8949300 8575800 13284000 12703000 11141000 6149100 11394000 437300 13001000 6147300 10262000 9076000 8911000 13248000 12236000 10814000 1 1 0 1 1 1 1 1 1 1 1 1021800000 611590000 410260000 11597 3368 10764 61793;61794;61795 75029 75029 3303 1 LGTLSALDILIK Unmodified 1255.7751 0.77513901 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 By MS/MS 2 0 1 1 80.421 80.402 2 2.1987E-15 26632 20211116_3440_TMUAki_TMT10x_S_F2 167.09 86.849 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11598 2116 10765 61796 75030 75030 1 LGTLSPAFSTR Unmodified 1148.619 0.61897272 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 54.899 54.639 2 1.2881E-15 19005 20211116_3441_TMUAki_TMT10x_S_F3 200.78 168.84 19426000 34883000 236920 36770000 26754000 30593000 20915000 30546000 35021000 28254000 30293000 18089000 32557000 1859800 37286000 25516000 31546000 21957000 30991000 34843000 27689000 29369000 6 6 5 6 6 6 6 6 6 6 6 6928800 11255000 111980 12346000 14112000 18489000 9466300 10928000 11601000 9803700 10463000 6451600 10506000 705210 12610000 13416000 18287000 9911100 11458000 11668000 9621100 10129000 2 2 1 2 2 2 2 2 2 2 2 12497000 23628000 124940 24424000 12642000 12104000 11448000 19618000 23420000 18450000 19830000 11637000 22051000 1154600 24676000 12100000 13259000 12045000 19532000 23174000 18067000 19241000 4 4 4 4 4 4 4 4 4 4 4 1751300000 961540000 789720000 11599 2048 10766 61797;61798;61799;61800;61801 75031;75032;75033;75034;75035;75036;75037 75035 7 LGTPALTSR Unmodified 914.51853 0.5185304 914 P34896;P34896-2;P34896-4;P34896-3 SHMT1 Serine hydroxymethyltransferase, cytosolic yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 37.397 37.754 2 0.098319 9104 20211116_3436_TMUAki_TMT10x_P_F8 45.7 17.213 604580 983120 343.22 1093300 1071800 970600 731770 740330 862500 675780 853060 562910 917770 54932 1105700 1019000 991170 764090 762410 871390 662660 823200 2 2 1 2 2 2 2 2 2 2 2 297200 495340 343.22 561710 782060 733200 439210 373550 443860 352640 435380 276730 462450 31751 570910 741270 728280 463580 397330 451050 345270 420250 1 1 1 1 1 1 1 1 1 1 1 307370 487790 0 531550 289730 237390 292560 366780 418640 323140 417680 286180 455320 23181 534780 277740 262890 300510 365080 420340 317390 402950 1 1 0 1 1 1 1 1 1 1 1 22870000 13472000 9397500 11600 914 10767 61802;61803 75038 75038 1 LGTPQQIAIAR Unmodified 1166.6772 0.6771563 2060 Q7L576;Q96F07;Q7L576-2;Q7L576-3;Q96F07-2 CYFIP1;CYFIP2 Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2 yes no 0 0 0 0 By MS/MS 1 0 1 1 46.346 46.114 2 0.0088535 14494 20211116_3439_TMUAki_TMT10x_S_F1 64.692 31.334 1188300 2089400 5132.5 2136700 1144100 1262700 1125700 2373600 2698600 2038200 1984300 1106500 1949800 102680 2163400 1096800 1365200 1191500 2347200 2651200 2004400 1936300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1188300 2089400 5132.5 2136700 1144100 1262700 1125700 2373600 2698600 2038200 1984300 1106500 1949800 102680 2163400 1096800 1365200 1191500 2347200 2651200 2004400 1936300 1 1 1 1 1 1 1 1 1 1 1 133930000 0 133930000 11601 2060 10768 61804 75039 75039 1 LGVAGQWR Unmodified 885.48209 0.48208531 588 P09936 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 44.698 44.634 2 0.0010653 13454 20211116_3429_TMUAki_TMT10x_P_F2 128.82 92.936 42641000 61518000 241130 63511000 77778000 61091000 46698000 26617000 32090000 30202000 47840000 39705000 57411000 4227000 64615000 73809000 61610000 48540000 28910000 33844000 29349000 45662000 7 7 4 7 7 7 7 7 7 7 7 35576000 50258000 212580 50908000 71432000 56210000 40220000 20307000 25429000 23929000 38393000 33127000 46899000 3647700 51968000 67720000 56129000 41971000 22567000 26977000 23221000 36635000 4 4 3 4 4 4 4 4 4 4 4 7064700 11260000 28550 12603000 6346200 4881600 6477400 6309900 6661300 6273000 9446300 6578000 10512000 579360 12647000 6088600 5481400 6569100 6342300 6867500 6128100 9026300 3 3 1 3 3 3 3 3 3 3 3 1451600000 1012200000 439470000 11602 588 10769 61805;61806;61807;61808;61809;61810 75040;75041;75042;75043;75044 75041 5 LGVCFDVPTASVTEIQEK Unmodified 1991.9874 0.98739299 2918 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 0 By MS/MS By MS/MS 5 1.04 1 3 5 3 1 7 6 75.896 75.894 2;3 6.2631E-90 25242 20211116_3433_TMUAki_TMT10x_P_F5 318.91 292.24 81303000 131720000 860640 119980000 85771000 126060000 90764000 77371000 65616000 76736000 94824000 75706000 122870000 7344300 123320000 82402000 126950000 91026000 81103000 68890000 74971000 90569000 18 18 12 18 18 18 18 18 18 18 18 50291000 81958000 602560 70863000 50392000 97336000 56970000 51784000 44117000 51166000 61624000 46829000 76434000 4529200 73471000 48507000 96503000 57045000 54930000 46065000 49997000 58905000 12 12 8 12 12 12 12 12 12 12 12 31012000 49765000 258080 49121000 35379000 28719000 33794000 25587000 21499000 25570000 33200000 28877000 46434000 2815100 49852000 33895000 30445000 33981000 26173000 22825000 24974000 31665000 6 6 4 6 6 6 6 6 6 6 6 12561000000 6971700000 5588900000 11603 2918 10770 61811;61812;61813;61814;61815;61816;61817;61818;61819;61820;61821;61822;61823 75045;75046;75047;75048;75049;75050;75051;75052;75053;75054;75055;75056;75057;75058;75059;75060;75061;75062;75063 75051 19 LGVDLDAQTWR Unmodified 1272.6463 0.64625011 766 P22102 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 62.68 62.814 2 3.2818E-06 19615 20211116_3431_TMUAki_TMT10x_P_F4 122.57 91.912 15968000 24760000 73407 26826000 19721000 26702000 20527000 15151000 15369000 14770000 18727000 14868000 23111000 1341300 27219000 18928000 26950000 20619000 15976000 15980000 14441000 17961000 4 4 2 4 4 4 4 4 4 4 4 15968000 24760000 73407 26826000 19721000 26702000 20527000 15151000 15369000 14770000 18727000 14868000 23111000 1341300 27219000 18928000 26950000 20619000 15976000 15980000 14441000 17961000 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 837270000 837270000 0 11604 766 10771 61824;61825 75064;75065;75066;75067 75064 4 LGVEPSDDDCVSVQHVCTIVSFR Unmodified 2618.2105 0.21048642 730 P19367;P19367-4;P19367-2;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 0 By MS/MS 4 0 1 1 65.003 64.837 3 3.6741E-33 20952 20211116_3442_TMUAki_TMT10x_S_F4 168.64 160.14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11605 730 10772 61826 75068 75068 1 LGVIEDHSNR Unmodified 1138.5731 0.57308516 672 P14625;Q58FF3 HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein yes no 0 0 0 0 By MS/MS By MS/MS 3 1.5 2 1 2 1 2 4 4 33.62 33.549 2;3 2.9821E-11 7857 20211116_3431_TMUAki_TMT10x_P_F4 203.55 179.4 4933400 7871400 24812 8210700 7122300 7008700 5603000 4586200 5010100 4590200 6295900 4593500 7346200 445150 8334300 6791300 7159700 5744400 4785300 5168500 4482900 6033600 8 8 4 8 8 8 8 8 8 8 8 2539700 4024200 2584.8 4069900 4643500 4824800 2958000 2431800 2616100 2423900 3202500 2364700 3755200 230580 4160000 4409400 4814800 3078000 2593100 2697200 2367600 3071200 3 3 1 3 3 3 3 3 3 3 3 2393600 3847200 22227 4140800 2478800 2183900 2645000 2154400 2394000 2166400 3093400 2228800 3591000 214580 4174300 2381900 2344800 2666400 2192300 2471300 2115300 2962400 5 5 3 5 5 5 5 5 5 5 5 710340000 429620000 280720000 11606 672 10773 61827;61828;61829;61830;61831;61832;61833;61834 75069;75070;75071;75072;75073;75074;75075;75076;75077 75071 9 LGVLHPDVITK Unmodified 1190.7023 0.70230842 2941 Q9NSD9;Q9NSD9-2 FARSB Phenylalanine--tRNA ligase beta subunit yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 51.208 51.564 3 4.5342E-12 14804 20211116_3436_TMUAki_TMT10x_P_F8 139.86 115.51 10176000 16085000 45443 17586000 14506000 16817000 11685000 13600000 13360000 13434000 13796000 9474500 15015000 868030 17823000 13836000 17107000 12052000 13985000 13533000 13127000 13295000 4 4 3 4 4 4 4 4 4 4 4 5097200 7632000 5000.7 8778100 10080000 11858000 6714400 6633700 6452500 6650500 6801700 4745400 7125800 418420 8920200 9575600 11772000 6978600 7008900 6588200 6494500 6550500 2 2 1 2 2 2 2 2 2 2 2 5078700 8453100 40442 8807800 4426200 4959600 4971000 6966000 6907200 6783100 6994100 4729100 7889000 449610 8902800 4260200 5334900 5073700 6975800 6945300 6632300 6744200 2 2 2 2 2 2 2 2 2 2 2 1849000000 695840000 1153200000 11607 2941 10774 61835;61836;61837;61838 75078;75079;75080;75081;75082 75080 5 LGVNNISGIEEVNMFTNQGTVIHFNNPK Oxidation (M) 3101.524 0.52403307 740 P20290;P20290-2 BTF3 Transcription factor BTF3 yes no 0 0 1 0 By MS/MS By MS/MS 6.82 1.95 1 1 4 5 5 6 75.186 75.2 3;4;5 1.2546E-52 24452 20211116_3436_TMUAki_TMT10x_P_F8 213.2 203.05 31042000 55936000 231480 43384000 32906000 54580000 36529000 36500000 37291000 34897000 37985000 28903000 52148000 1895400 45313000 31645000 54506000 36887000 37975000 37929000 34148000 36621000 11 11 6 11 11 11 11 11 11 11 11 15268000 27600000 114150 20605000 12597000 31960000 15686000 18965000 19107000 16912000 17993000 14216000 25728000 777910 21684000 12157000 31566000 15856000 19877000 19249000 16602000 17391000 5 5 2 5 5 5 5 5 5 5 5 15774000 28336000 117330 22779000 20309000 22620000 20843000 17534000 18184000 17984000 19992000 14687000 26420000 1117500 23629000 19488000 22940000 21032000 18098000 18680000 17546000 19230000 6 6 4 6 6 6 6 6 6 6 6 16840000000 7090600000 9749800000 11608 740 10775 61839;61840;61841;61842;61843;61844;61845;61846;61847;61848;61849 75083;75084;75085;75086;75087;75088;75089;75090;75091;75092;75093 75086 848 11 LGVQVVITDPEKLDQIR Unmodified 1922.0837 0.083676635 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 1 By MS/MS By MS/MS 5.5 1.5 1 1 2 2 4 2 67.82 67.989 3 2.6638E-15 23185 20211116_3446_TMUAki_TMT10x_S_F7 145.91 130.32 27161000 44891000 330830 42065000 32971000 46395000 35009000 34866000 30657000 34416000 35858000 25291000 41878000 2497500 43177000 31676000 46738000 35270000 36018000 31563000 33631000 34430000 5 5 4 5 5 5 5 5 5 5 5 15935000 25763000 130150 24158000 17937000 33540000 21080000 21313000 18126000 20550000 21091000 14837000 24034000 1326400 24899000 17276000 33315000 21126000 22263000 18674000 20102000 20254000 3 3 2 3 3 3 3 3 3 3 3 11226000 19128000 200680 17906000 15034000 12856000 13929000 13554000 12531000 13866000 14767000 10454000 17844000 1171100 18278000 14400000 13424000 14144000 13754000 12889000 13529000 14176000 2 2 2 2 2 2 2 2 2 2 2 6992600000 3599400000 3393200000 11609 712 10776 61850;61851;61852;61853;61854;61855 75094;75095;75096;75097;75098;75099 75099 6 LGVTANDVK Unmodified 915.50255 0.50254598 988 P40925;P40925-3;P40925-2 MDH1 Malate dehydrogenase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 41.83 41.967 2 0.00090406 10311 20211116_3444_TMUAki_TMT10x_S_F5 108.57 54.02 4012500 6742200 82377 7357100 6233000 5168500 5141600 5216600 5385700 4158400 5991500 3736700 6293500 440540 7429300 5954100 5401400 5279900 5269800 5489800 4104900 5761100 3 3 3 3 3 3 3 3 3 3 3 1132500 1685900 16540 2070400 2932200 2703900 1827900 1775800 1742200 1256800 1646500 1054600 1574600 134510 2094400 2784800 2694600 1909200 1836900 1772700 1248900 1591200 1 1 1 1 1 1 1 1 1 1 1 2880000 5056300 65837 5286800 3300800 2464600 3313600 3440800 3643500 2901600 4345100 2682100 4718900 306030 5334900 3169300 2706800 3370700 3432900 3717100 2856100 4169800 2 2 2 2 2 2 2 2 2 2 2 193570000 73820000 119750000 11610 988 10777 61856;61857;61858;61859;61860 75100;75101;75102 75101 3 LGVTNTIISHYDGR Unmodified 1544.7947 0.79470526 1042 P46087;P46087-2;P46087-4;P46087-3 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 51.135 51.424 3 1.7609E-23 15840 20211116_3435_TMUAki_TMT10x_P_F7 181.77 168.34 10645000 18091000 0 18468000 17133000 21224000 11469000 19383000 18151000 16504000 16539000 9910400 16882000 801430 18855000 16274000 21410000 12137000 19714000 18116000 16237000 16005000 4 4 0 4 4 4 4 4 4 4 4 5574200 8871000 0 9521400 12235000 16128000 7627400 9552400 8829300 8266300 8132100 5189400 8280000 472470 9766200 11610000 15875000 8015000 10006000 8905000 8126300 7866300 2 2 0 2 2 2 2 2 2 2 2 5071100 9219900 0 8946900 4897900 5096100 3841900 9830300 9321800 8237900 8407000 4721000 8602200 328960 9089000 4664000 5535500 4121900 9708200 9211000 8111200 8138200 2 2 0 2 2 2 2 2 2 2 2 4235500000 2585300000 1650200000 11611 1042 10778 61861;61862;61863;61864;61865 75103;75104;75105;75106;75107 75104 5 LGVTVLSR Unmodified 843.5178 0.51780212 361 O75828 CBR3 Carbonyl reductase [NADPH] 3 yes yes 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 46.325 46.209 2 0.002455 12489 20211116_3428_TMUAki_TMT10x_P_F1 109.36 0 3496000 5496100 17307 6007200 4960900 4971600 3703800 4330900 4575200 4037100 4882900 3255200 5130300 326490 6076700 4726200 5114200 3849700 4426900 4627200 3954900 4700800 2 2 2 2 2 2 2 2 2 2 2 1880500 2814100 13193 3105600 3277100 3536100 2120100 2254500 2450700 2024600 2581200 1751100 2626900 187760 3154100 3114000 3547000 2221200 2350000 2483300 1986800 2485900 1 1 1 1 1 1 1 1 1 1 1 1615500 2682000 4114 2901600 1683800 1435500 1583800 2076400 2124500 2012500 2301700 1504200 2503400 138720 2922700 1612300 1567300 1628400 2076900 2143900 1968100 2214900 1 1 1 1 1 1 1 1 1 1 1 242270000 147760000 94509000 11612 361 10779 61866;61867;61868 75108;75109;75110 75108 3 LGWDPKPGEGHLDALLR Unmodified 1872.9846 0.98463129 1246 P55786;P55786-2 NPEPPS Puromycin-sensitive aminopeptidase yes no 0 0 0 1 By MS/MS 7 0 2 2 59.736 60.459 3;4 0.00052418 19546 20211116_3435_TMUAki_TMT10x_P_F7 69.522 56.967 8790400 13092000 0 14863000 10944000 14382000 12602000 5131700 4647100 6714000 9302800 8184300 12223000 707000 15030000 10532000 14473000 12449000 5731700 5240900 6492100 8830000 1 1 0 1 1 1 1 1 1 1 1 8790400 13092000 0 14863000 10944000 14382000 12602000 5131700 4647100 6714000 9302800 8184300 12223000 707000 15030000 10532000 14473000 12449000 5731700 5240900 6492100 8830000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1048300000 1048300000 0 11613 1246 10780 61869;61870 75111;75112 75111 2 LGWVRPDLGELSK Unmodified 1468.8038 0.80381338 1167 P51970 NDUFA8 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 65.32 65.32 3 0.00017712 22369 20211116_3439_TMUAki_TMT10x_S_F1 83.869 53.041 6282900 9455400 177480 10821000 6670000 8699500 7602000 2912700 2399200 3497500 6318200 5851300 8828000 691720 10911000 6429700 8863300 7501200 3270900 2807500 3391700 5973600 1 1 1 1 1 1 1 1 1 1 1 6282900 9455400 177480 10821000 6670000 8699500 7602000 2912700 2399200 3497500 6318200 5851300 8828000 691720 10911000 6429700 8863300 7501200 3270900 2807500 3391700 5973600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 489270000 489270000 0 11614 1167 10781 61871;61872 75113;75114 75114 2 LGYAGNTEPQFIIPSCIAIK Unmodified 2191.1347 0.13472593 1296 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 1.8 3 5 3 1 5 7 72.628 72.593 2;3 7.9567E-25 25898 20211116_3440_TMUAki_TMT10x_S_F2 177.42 155.86 35361000 62033000 339970 55707000 38776000 55790000 41024000 29883000 31605000 33654000 41654000 32926000 57860000 2640000 57278000 37248000 56248000 41203000 31804000 32922000 32713000 39871000 9 9 3 9 9 9 9 9 9 9 9 25886000 45023000 236790 40694000 25241000 44007000 28672000 20303000 21765000 23722000 29990000 24104000 41995000 1755200 41870000 24297000 44094000 28690000 21941000 22736000 23028000 28676000 4 4 2 4 4 4 4 4 4 4 4 9474800 17011000 103180 15012000 13536000 11783000 12352000 9580700 9840700 9931400 11664000 8822300 15865000 884820 15408000 12952000 12154000 12513000 9862700 10186000 9685100 11195000 5 5 1 5 5 5 5 5 5 5 5 7584800000 4141800000 3443000000 11615 1296 10782 61873;61874;61875;61876;61877;61878;61879;61880;61881;61882;61883;61884 75115;75116;75117;75118;75119;75120;75121;75122;75123;75124;75125;75126 75121 12 LGYEEHIPGQTR Unmodified 1398.6892 0.68917755 312 O75153 CLUH Clustered mitochondria protein homolog yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 36.11 36.211 3 0.0095111 7945 20211116_3444_TMUAki_TMT10x_S_F5 58.674 37.21 901830 1482300 18190 1705200 2233200 1892300 1283500 1256100 1400600 1105100 1393600 839830 1384000 110370 1726700 2118500 1901900 1355200 1304700 1419500 1085500 1344500 2 2 2 2 2 2 2 2 2 2 2 592730 995590 13345 1133900 1955000 1639900 1017000 896620 1030400 802960 963950 551990 929510 80657 1154600 1851700 1622700 1081000 946330 1045300 788070 931940 1 1 1 1 1 1 1 1 1 1 1 309100 486720 4845.4 571310 278220 252400 266550 359470 370190 302170 429610 287840 454480 29710 572080 266770 279210 274190 358370 374180 297480 412590 1 1 1 1 1 1 1 1 1 1 1 92649000 77343000 15306000 11616 312 10783 61885;61886;61887 75127;75128;75129 75129 3 LGYTPVCR Unmodified 964.48004 0.4800364 1770 Q15102 PAFAH1B3 Platelet-activating factor acetylhydrolase IB subunit gamma yes yes 0 0 0 0 By MS/MS By MS/MS 6 2.38 1 2 1 2 3 3 37.566 37.778 2 0.00048127 8464 20211116_3447_TMUAki_TMT10x_S_F8 166.05 109.93 3867400 6199000 29064 6781100 6936500 5966900 4225300 3959400 3312000 3774100 5121600 3600900 5786500 360080 6864600 6582700 6083800 4399400 4121400 3473600 3693600 4884600 5 5 2 5 5 5 5 5 5 5 5 2268700 3550000 29064 3872300 5362400 4635500 2622500 2138400 1696000 2030300 2835500 2112500 3313800 243290 3939000 5073600 4619200 2774700 2296900 1806300 1987400 2700000 3 3 2 3 3 3 3 3 3 3 3 1598700 2649000 0 2908800 1574200 1331400 1602800 1821000 1616000 1743800 2286100 1488400 2472700 116780 2925500 1509100 1464600 1624700 1824500 1667200 1706200 2184600 2 2 0 2 2 2 2 2 2 2 2 488800000 350290000 138520000 11617 1770 10784 61888;61889;61890;61891;61892;61893 75130;75131;75132;75133;75134;75135 75135 6 LHAEFAAER Unmodified 1042.5196 0.51959303 2822 Q9H773 DCTPP1 dCTP pyrophosphatase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 1 1 1 1 3 1 32.746 32.637 3 0.00023495 10048 20211116_3441_TMUAki_TMT10x_S_F3 116.52 89.811 807430 1186000 4968.5 1224800 1236300 1217500 899850 780390 847090 708090 961790 751830 1106800 77578 1246600 1177200 1230900 928710 813340 868140 694530 924260 2 2 2 2 2 2 2 2 2 2 2 543960 769840 1086.7 814310 981460 966650 581230 544020 610440 459380 633930 506490 718510 52238 829870 931080 965870 611400 571920 620580 452140 610810 1 1 1 1 1 1 1 1 1 1 1 263470 416200 3881.8 410480 254790 250810 318620 236370 236640 248710 327860 245350 388330 25340 416770 246150 265030 317320 241420 247570 242390 313450 1 1 1 1 1 1 1 1 1 1 1 81551000 50151000 31400000 11618 2822 10785 61894;61895;61896;61897 75136;75137 75137 2 LHAEFAAERDWEQFHQPR Unmodified 2266.0668 0.066797792 2822 Q9H773 DCTPP1 dCTP pyrophosphatase 1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.71 1.03 2 4 4 4 7 7 46.077 46.175 4;5 4.7515E-58 11948 20211116_3444_TMUAki_TMT10x_S_F5 250.95 226.76 18119000 28921000 176740 32914000 24639000 23875000 18900000 22103000 21314000 19472000 24135000 16871000 27002000 1584400 33160000 23486000 24840000 19546000 22483000 21678000 19125000 23195000 17 17 9 17 17 17 17 17 17 17 17 7844600 11842000 70641 13327000 14873000 15798000 10501000 8819500 8734000 8004100 10022000 7304200 11055000 761160 13528000 14152000 15785000 10825000 9294800 9008400 7850800 9628400 7 7 4 7 7 7 7 7 7 7 7 10275000 17079000 106090 19587000 9766200 8077200 8399300 13283000 12580000 11468000 14113000 9567100 15946000 823190 19632000 9334300 9055400 8720700 13188000 12669000 11275000 13567000 10 10 5 10 10 10 10 10 10 10 10 7136800000 4204200000 2932500000 11619 2822 10786 61898;61899;61900;61901;61902;61903;61904;61905;61906;61907;61908;61909;61910;61911 75138;75139;75140;75141;75142;75143;75144;75145;75146;75147;75148;75149;75150;75151;75152;75153;75154 75150 17 LHALAGFQQR Unmodified 1139.62 0.61997578 2528 Q96P11;Q96P11-2;Q96P11-4;Q96P11-5;Q63ZY6;Q3KNT7;Q63ZY6-4;Q3KNT7-2;Q3KNT7-3;Q63ZY6-5 NSUN5;NSUN5P2;NSUN5P1 Probable 28S rRNA (cytosine-C(5))-methyltransferase;Putative methyltransferase NSUN5C;Putative NOL1/NOP2/Sun domain family member 5B yes no 0 0 0 0 By MS/MS 3 0 1 1 38.921 38.649 3 0.032932 12519 20211116_3441_TMUAki_TMT10x_S_F3 47.732 31.578 600300 921230 7648.6 954360 578280 492970 617260 840080 825320 721450 873180 559000 859730 56589 964360 555920 538460 630520 833060 832210 709500 840840 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 600300 921230 7648.6 954360 578280 492970 617260 840080 825320 721450 873180 559000 859730 56589 964360 555920 538460 630520 833060 832210 709500 840840 1 1 1 1 1 1 1 1 1 1 1 35572000 0 35572000 11620 2528 10787 61912 75155 75155 1 LHAVNAEECNVLQGR Unmodified 1708.8315 0.83150147 342 O75521;O75521-2 ECI2 Enoyl-CoA delta isomerase 2, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 39.601 39.652 3 1.2168E-19 10256 20211116_3431_TMUAki_TMT10x_P_F4 170.95 160.09 728090 1171100 5783.4 1210200 1752400 1665400 1098100 903550 1259300 892800 1104500 677960 1092900 80099 1238600 1664200 1651400 1153100 956800 1268600 872400 1070200 1 1 1 1 1 1 1 1 1 1 1 728090 1171100 5783.4 1210200 1752400 1665400 1098100 903550 1259300 892800 1104500 677960 1092900 80099 1238600 1664200 1651400 1153100 956800 1268600 872400 1070200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 214670000 214670000 0 11621 342 10788 61913;61914;61915 75156;75157;75158 75156 3 LHDAFFK Unmodified 876.44939 0.4493882 1633 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 45.704 46.209 3 0.0025755 13814 20211116_3435_TMUAki_TMT10x_P_F7 104.21 64.106 1254700 1912700 4522.1 2243600 762730 1366100 1268000 1413600 1984500 1543000 1588200 1168300 1786000 101350 2252400 744320 1446900 1282000 1438700 1973500 1501600 1544300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1254700 1912700 4522.1 2243600 762730 1366100 1268000 1413600 1984500 1543000 1588200 1168300 1786000 101350 2252400 744320 1446900 1282000 1438700 1973500 1501600 1544300 1 1 1 1 1 1 1 1 1 1 1 273140000 0 273140000 11622 1633 10789 61916;61917 75159;75160 75159 2 LHDALDAK Unmodified 881.46068 0.46068117 547 P07954;P07954-2 FH Fumarate hydratase, mitochondrial yes no 0 0 0 0 By MS/MS 4 0 1 1 35.701 35.726 3 0.06607 8687 20211116_3431_TMUAki_TMT10x_P_F4 38.086 8.9995 4014300 5533700 410040 5096900 10175000 18445000 10883000 13752000 13027000 12451000 11737000 3740800 5161900 801240 5430100 9799200 17862000 11069000 14180000 13113000 12214000 11362000 1 1 1 1 1 1 1 1 1 1 1 4014300 5533700 410040 5096900 10175000 18445000 10883000 13752000 13027000 12451000 11737000 3740800 5161900 801240 5430100 9799200 17862000 11069000 14180000 13113000 12214000 11362000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 40817000 40817000 0 11623 547 10790 61918 75161 75161 1 LHDETLTYLNQGQSYEIR Unmodified 2179.0546 0.054561351 1567 Q12800;Q12800-2;Q12800-3;Q12800-4;Q9NZI7;Q9NZI7-4 TFCP2;UBP1 Alpha-globin transcription factor CP2;Upstream-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.894 2 1 2 1 4 54.476 54.573 3 8.9362E-24 15402 20211116_3444_TMUAki_TMT10x_S_F5 169.64 152.4 8208000 15184000 59265 16545000 9818500 10394000 8299800 12058000 10887000 10638000 13130000 7642500 14174000 708410 16691000 9376600 11006000 8578400 12133000 11042000 10449000 12596000 6 6 3 6 6 6 6 6 6 6 6 1406000 2639800 0 2997500 2528300 3552500 2024300 2225200 1993600 1862900 2095400 1308900 2464500 100960 3041000 2409500 3555000 2078800 2318600 2033100 1834300 2018200 1 1 0 1 1 1 1 1 1 1 1 6802100 12544000 59265 13548000 7290200 6841500 6275500 9832800 8892900 8775600 11034000 6333700 11709000 607450 13650000 6967100 7450600 6499600 9814700 9008400 8614300 10578000 5 5 3 5 5 5 5 5 5 5 5 2716400000 942950000 1773400000 11624 1567 10791 61919;61920;61921;61922;61923 75162;75163;75164;75165;75166;75167;75168 75166 7 LHDFGYR Unmodified 906.4348 0.43480077 1031 P43490 NAMPT Nicotinamide phosphoribosyltransferase yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 34.822 34.874 3 0.00050863 7320 20211116_3444_TMUAki_TMT10x_S_F5 138.37 93.394 435040 643410 1749.9 768950 1014900 827050 544230 592090 616990 574030 616890 405040 600840 40882 776460 961130 833680 578900 613310 624500 561380 595090 2 2 1 2 2 2 2 2 2 2 2 268740 404820 0 466680 854760 661650 375460 368760 383300 360910 369940 250180 377970 25549 474640 807220 655440 406150 389480 389130 352810 357280 1 1 0 1 1 1 1 1 1 1 1 166300 238600 1749.9 302270 160190 165400 168770 223320 233690 213120 246950 154860 222870 15333 301820 153920 178240 172750 223830 235370 208570 237810 1 1 1 1 1 1 1 1 1 1 1 190150000 134710000 55436000 11625 1031 10792 61924;61925;61926 75169;75170 75170 2 LHDPEGMGIIPR Oxidation (M) 1349.6762 0.67617003 906 P33176 KIF5B Kinesin-1 heavy chain yes yes 0 0 1 0 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 33.803 33.755 3 9.3809E-05 12428 20211116_3441_TMUAki_TMT10x_S_F3 93.839 76.369 4035900 6023500 62016 6985000 5343700 5123600 4286000 3860200 3917400 4063200 5024200 3758100 5624100 396420 7030100 5100000 5306000 4391400 3994600 4040700 3960000 4812400 4 4 2 4 4 4 4 4 4 4 4 1790600 2568900 51173 2986200 3270100 3088500 2145200 1514000 1436500 1695200 2273300 1667600 2398600 216870 3018400 3110400 3104700 2212900 1624200 1522100 1648200 2167100 1 1 1 1 1 1 1 1 1 1 1 2245300 3454600 10843 3998800 2073500 2035100 2140800 2346100 2480900 2368000 2750800 2090500 3225500 179550 4011700 1989600 2201300 2178500 2370300 2518600 2311800 2645300 3 3 1 3 3 3 3 3 3 3 3 315960000 203880000 112080000 11626 906 10793 61927;61928;61929 75171;75172;75173;75174 75172 1114 4 LHDPEGMGIIPR Unmodified 1333.6813 0.6812554 906 P33176 KIF5B Kinesin-1 heavy chain yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 45.79 45.944 3 5.1908E-05 13033 20211116_3433_TMUAki_TMT10x_P_F5 86.838 47.82 1267900 2090000 16444 2334300 1046200 902510 924210 1621300 1523900 1259600 1845800 1180700 1951100 117340 2342700 1001100 1023900 962410 1601300 1535500 1245000 1770600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1267900 2090000 16444 2334300 1046200 902510 924210 1621300 1523900 1259600 1845800 1180700 1951100 117340 2342700 1001100 1023900 962410 1601300 1535500 1245000 1770600 1 1 1 1 1 1 1 1 1 1 1 66726000 0 66726000 11627 906 10793 61930;61931 75175;75176 75175 2 LHDPQLMGIIPR Unmodified 1388.7598 0.75984008 262 O60282;Q12840 KIF5C;KIF5A Kinesin heavy chain isoform 5C;Kinesin heavy chain isoform 5A yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 55.483 55.522 3 0.00013763 15875 20211116_3447_TMUAki_TMT10x_S_F8 89.805 59.473 6169200 9766100 1405600 12907000 9995500 14298000 9744300 12075000 8291000 9988000 11143000 5754600 9124500 1875000 12967000 9663000 14431000 9852200 12327000 8599400 9840800 10661000 2 2 2 2 2 2 2 2 2 2 2 3550800 5674300 920920 7457100 6351100 10524000 6156800 7869200 5273400 6169900 6657400 3313000 5301400 1191900 7527400 6140700 10472000 6227900 8084000 5452500 6095900 6379300 1 1 1 1 1 1 1 1 1 1 1 2618400 4091700 484670 5450300 3644300 3774800 3587500 4206300 3017600 3818100 4485400 2441600 3823100 683140 5439200 3522300 3958600 3624300 4243300 3146900 3744900 4281400 1 1 1 1 1 1 1 1 1 1 1 331530000 189310000 142220000 11628 262 10794 61932;61933 75177;75178 75178 2 LHDVEHVLIDVGTGYYVEK Unmodified 2185.1055 0.10553429 2576 Q99471;Q99471-3 PFDN5 Prefoldin subunit 5 yes no 0 0 0 0 By MS/MS By matching 5.25 0.433 3 1 2 2 97.79 97.792 3;4 2.9421E-06 33096 20211116_3433_TMUAki_TMT10x_P_F5 92.551 76.608 33700 58784 0 47232 33920 71345 47347 38118 38982 32341 44726 31378 54809 0 49361 32861 70447 47065 40260 40228 31824 42968 2 2 0 2 2 2 2 2 2 2 2 33700 58784 0 47232 33920 71345 47347 38118 38982 32341 44726 31378 54809 0 49361 32861 70447 47065 40260 40228 31824 42968 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2426800 1089500 1337400 11629 2576 10795 61934;61935;61936;61937 75179;75180;75181 75180 3 LHEAVFLR Unmodified 983.55525 0.55525025 1504 Q03154;Q03154-2;Q03154-3;Q03154-4 ACY1 Aminoacylase-1 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 4 1 3 39.683 40.124 3 0.0042643 11230 20211116_3446_TMUAki_TMT10x_S_F7 77.923 48.773 218130 256300 7658.5 283280 403110 384100 216780 214770 219440 182500 383340 203160 239250 27813 288590 382300 381270 229720 225940 228940 179570 364720 1 1 1 1 1 1 1 1 1 1 1 218130 256300 7658.5 283280 403110 384100 216780 214770 219440 182500 383340 203160 239250 27813 288590 382300 381270 229720 225940 228940 179570 364720 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42736000 42736000 0 11630 1504 10796 61938;61939;61940;61941 75182;75183;75184;75185 75185 4 LHEEGIIYR Unmodified 1128.5928 0.59275797 820 P26640;P26640-2 VARS Valine--tRNA ligase yes no 0 0 0 0 By MS/MS By MS/MS 2.5 1.32 2 3 1 1 1 3 5 35.993 35.938 3 1.664E-06 11353 20211116_3441_TMUAki_TMT10x_S_F3 186.16 141.81 3584700 4990300 29922 5754600 5459100 4520800 3853200 3032400 3086700 2836300 4724700 3337700 4659300 321130 5798200 5193900 4648100 3968700 3152400 3231800 2778200 4507100 5 5 3 5 5 5 5 5 5 5 5 2116700 2659300 0 3101600 4130800 3305600 2423600 1568000 1700100 1532800 2733400 1970600 2483100 173500 3136000 3915900 3315900 2525300 1680900 1797900 1498500 2604800 2 2 0 2 2 2 2 2 2 2 2 1468000 2331000 29922 2653000 1328300 1215200 1429600 1464400 1386600 1303500 1991400 1367100 2176200 147640 2662300 1278000 1332300 1443500 1471500 1433900 1279700 1902300 3 3 3 3 3 3 3 3 3 3 3 1046300000 649650000 396630000 11631 820 10797 61942;61943;61944;61945;61946;61947;61948;61949 75186;75187;75188;75189;75190;75191;75192;75193 75191 8 LHEENFEITTLR Unmodified 1500.7573 0.75725712 2538 Q96Q11;Q96Q11-2 TRNT1 CCA tRNA nucleotidyltransferase 1, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 48.943 48.844 3 4.424E-08 14329 20211116_3442_TMUAki_TMT10x_S_F4 138.2 120.07 7060100 11730000 313900 13610000 6289200 5968500 5948000 9600200 9481800 8357300 10102000 6576000 10953000 867080 13638000 6040900 6633300 6160500 9540300 9513400 8213400 9725700 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7060100 11730000 313900 13610000 6289200 5968500 5948000 9600200 9481800 8357300 10102000 6576000 10953000 867080 13638000 6040900 6633300 6160500 9540300 9513400 8213400 9725700 3 3 3 3 3 3 3 3 3 3 3 724720000 0 724720000 11632 2538 10798 61950;61951;61952 75194;75195;75196;75197 75197 4 LHFFMPGFAPLTAR Oxidation (M) 1619.8283 0.82825399 1640 Q13509;Q13509-2 TUBB3 Tubulin beta-3 chain yes no 0 0 1 0 By MS/MS By MS/MS 5.71 1.03 1 2 2 2 4 3 66.135 66.304 3 2.4817E-05 20495 20211116_3445_TMUAki_TMT10x_S_F6 99.011 72.041 30378000 49537000 0 40910000 37588000 57747000 35266000 39246000 34125000 34742000 43627000 28279000 46191000 1426400 42596000 35935000 57374000 35858000 40701000 35104000 34116000 41792000 9 9 0 9 9 9 9 9 9 9 9 23832000 37808000 0 30909000 27616000 51486000 27851000 29914000 26036000 26095000 34841000 22186000 35253000 1091300 32327000 26455000 50697000 28182000 31389000 26879000 25643000 33337000 6 6 0 6 6 6 6 6 6 6 6 6546300 11729000 0 10001000 9971200 6260500 7415200 9331500 8089500 8647100 8786900 6093200 10938000 335110 10269000 9480000 6677600 7676100 9312200 8224900 8473400 8454800 3 3 0 3 3 3 3 3 3 3 3 11123000000 5487900000 5635000000 11633 1640 10799 61953;61954;61955;61956;61957;61958;61959 75198;75199;75200;75201;75202;75203;75204;75205;75206 75205 2206 9 LHFFMPGFAPLTAR Unmodified 1603.8333 0.83333937 1640 Q13509;Q13509-2 TUBB3 Tubulin beta-3 chain yes no 0 0 0 0 By MS/MS By MS/MS 7.12 0.781 2 3 3 5 3 76.042 76.062 2;3 3.9791E-07 24737 20211116_3436_TMUAki_TMT10x_P_F8 119.21 103.67 9219100 15603000 68294 14257000 12562000 12930000 11421000 7784000 7700600 8174400 10060000 8584300 14555000 617390 14620000 12020000 13139000 11529000 8185600 8080600 7967500 9631000 6 6 4 6 6 6 6 6 6 6 6 5518500 9065400 33629 8384100 6860400 9359400 7185200 4308500 4659600 4698600 5673800 5138500 8456400 263540 8615900 6588300 9361000 7193100 4647100 4886800 4572800 5441900 3 3 2 3 3 3 3 3 3 3 3 3700600 6538000 34665 5872800 5701700 3571000 4235800 3475500 3041100 3475800 4385700 3445800 6098200 353850 6003800 5431400 3777700 4336200 3538500 3193700 3394700 4189100 3 3 2 3 3 3 3 3 3 3 3 8265700000 4584400000 3681200000 11634 1640 10799 61960;61961;61962;61963;61964;61965;61966;61967 75207;75208;75209;75210;75211;75212;75213;75214 75210 8 LHFFMPGFAPLTSR Oxidation (M) 1635.8232 0.82316861 1418;1668;2689;539;488;2673;1889 P07437;A6NNZ2;P68371;Q13885;Q3ZCM7;Q9BVA1;P04350;Q9BUF5 TUBB;TUBB4B;TUBB2A;TUBB8;TUBB2B;TUBB4A;TUBB6 Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-6 chain no no 0 0 1 0 By MS/MS By MS/MS 6.5 1.14 2 2 4 6 19 68 7 54 54 39.329 39.415 2;3 1.6791E-13 20211 20211116_3445_TMUAki_TMT10x_S_F6 149.23 135.07 175140000 320340000 2186000 258420000 297780000 272990000 198530000 196750000 169340000 180190000 216070000 163080000 298680000 15345000 268220000 283100000 275490000 205660000 203400000 175210000 176670000 206990000 98 99 45 99 99 98 98 99 99 98 99 92339000 168930000 1722700 136430000 126510000 213360000 122730000 109620000 94531000 97387000 114140000 85986000 157510000 8206100 142630000 121280000 210280000 123810000 116330000 98099000 95617000 109500000 48 48 25 48 48 48 48 48 48 48 48 82796000 151410000 463310 121990000 171260000 59632000 75796000 87131000 74809000 82806000 101930000 77092000 141180000 7139300 125590000 161820000 65213000 81844000 87072000 77111000 81050000 97489000 50 51 20 51 51 50 50 51 51 50 51 163020000000 76823000000 86198000000 11635 539;1418;1668;1889;2689;488;2673 10800 61968;61969;61970;61971;61972;61973;61974;61975;61976;61977;61978;61979;61980;61981;61982;61983;61984;61985;61986;61987;61988;61989;61990;61991;61992;61993;61994;61995;61996;61997;61998;61999;62000;62001;62002;62003;62004;62005;62006;62007;62008;62009;62010;62011;62012;62013;62014;62015;62016;62017;62018;62019;62020;62021;62022;62023;62024;62025;62026;62027;62028;62029;62030;62031;62032;62033;62034;62035;62036;62037;62038;62039;62040;62041;62042;62043;62044;62045;62046;62047;62048;62049;62050;62051;62052;62053;62054;62055;62056;62057;62058;62059;62060;62061;62062;62063;62064;62065;62066;62067;62068;62069;62070;62071;62072;62073;62074;62075 75215;75216;75217;75218;75219;75220;75221;75222;75223;75224;75225;75226;75227;75228;75229;75230;75231;75232;75233;75234;75235;75236;75237;75238;75239;75240;75241;75242;75243;75244;75245;75246;75247;75248;75249;75250;75251;75252;75253;75254;75255;75256;75257;75258;75259;75260;75261;75262;75263;75264;75265;75266;75267;75268;75269;75270;75271;75272;75273;75274;75275;75276;75277;75278;75279;75280;75281;75282;75283;75284;75285;75286;75287;75288;75289;75290;75291;75292;75293;75294;75295;75296;75297;75298;75299;75300;75301;75302;75303;75304;75305;75306;75307;75308;75309;75310;75311;75312;75313;75314;75315;75316;75317;75318;75319 75278 383 105 LHFFMPGFAPLTSR Unmodified 1619.8283 0.82825399 1418;1668;2689;539;488;2673;1889 P07437;A6NNZ2;P68371;Q13885;Q3ZCM7;Q9BVA1;P04350;Q9BUF5 TUBB;TUBB4B;TUBB2A;TUBB8;TUBB2B;TUBB4A;TUBB6 Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-6 chain no no 0 0 0 0 By MS/MS By MS/MS 7.16 1.18 2 2 2 9 17 19 13 73.362 73.364 2;3 2.1224E-30 25717 20211116_3435_TMUAki_TMT10x_P_F7 217.78 135.03 67242000 108530000 399950 111800000 86292000 75442000 72824000 36944000 29216000 39317000 68303000 62606000 101280000 5398000 113280000 82374000 78233000 73223000 39576000 33018000 38301000 64680000 31 31 12 31 31 31 31 31 31 31 31 34522000 50259000 246500 56611000 39577000 50806000 42181000 17214000 12534000 18026000 31715000 32142000 46921000 2745900 57217000 38002000 51361000 41732000 19221000 14729000 17572000 30001000 16 16 5 16 16 16 16 16 16 16 16 32720000 58273000 153450 55189000 46716000 24636000 30643000 19730000 16682000 21290000 36588000 30464000 54364000 2652100 56063000 44372000 26872000 31490000 20354000 18288000 20729000 34679000 15 15 7 15 15 15 15 15 15 15 15 102470000000 56300000000 46166000000 11636 539;1418;1668;1889;2689;488;2673 10800 62076;62077;62078;62079;62080;62081;62082;62083;62084;62085;62086;62087;62088;62089;62090;62091;62092;62093;62094;62095;62096;62097;62098;62099;62100;62101;62102;62103;62104;62105;62106;62107 75320;75321;75322;75323;75324;75325;75326;75327;75328;75329;75330;75331;75332;75333;75334;75335;75336;75337;75338;75339;75340;75341;75342;75343;75344;75345;75346;75347;75348;75349;75350;75351;75352;75353;75354;75355;75356 75324 37 LHFLMTGYTPLTTDQSVASVR Oxidation (M) 2352.1784 0.17838166 778 P23258;Q9NRH3 TUBG1;TUBG2 Tubulin gamma-1 chain;Tubulin gamma-2 chain yes no 0 0 1 0 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 63.8 63.532 3 1.3536E-35 19831 20211116_3440_TMUAki_TMT10x_S_F2 195.96 183.58 7268300 12138000 48083 11102000 6702000 11691000 8037300 8265300 8933000 8334800 9118000 6767900 11322000 470790 11408000 6462600 11796000 8110500 8578500 9055200 8137400 8790100 5 5 3 5 5 5 5 5 5 5 5 4714100 7929600 34050 7179200 3623100 9072300 5282200 5198600 5433300 5371200 5732900 4389600 7396300 239620 7405300 3517800 9038500 5275900 5486200 5531500 5238700 5521100 3 3 2 3 3 3 3 3 3 3 3 2554200 4208100 14033 3922500 3078900 2618300 2755000 3066700 3499800 2963700 3385100 2378300 3925600 231180 4002200 2944800 2757800 2834500 3092300 3523700 2898700 3269000 2 2 1 2 2 2 2 2 2 2 2 3492700000 2030300000 1462400000 11637 778 10801 62108;62109;62110 75357;75358;75359;75360;75361;75362 75361 916 6 LHFLMTGYTPLTTDQSVASVR Unmodified 2336.1835 0.18346703 778 P23258;Q9NRH3 TUBG1;TUBG2 Tubulin gamma-1 chain;Tubulin gamma-2 chain yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 70.206 70.087 3 1.7618E-17 25401 20211116_3441_TMUAki_TMT10x_S_F3 138.75 129.5 5188400 8814800 68473 8288000 5716100 7720400 5976000 4955200 4960800 5323400 6565300 4831300 8223200 483840 8483800 5490400 7837900 6016700 5188700 5148100 5184000 6283600 3 3 2 3 3 3 3 3 3 3 3 3501100 5381300 68473 5144500 3237600 5791700 3878800 2974300 2981300 3421000 4310900 3260400 5020400 350390 5274600 3124600 5796900 3873100 3179600 3119500 3322800 4117400 2 2 2 2 2 2 2 2 2 2 2 1687300 3433600 0 3143400 2478500 1928800 2097200 1980900 1979500 1902400 2254400 1570900 3202800 133450 3209200 2365800 2041000 2143600 2009000 2028700 1861200 2166300 1 1 0 1 1 1 1 1 1 1 1 1250000000 852560000 397440000 11638 778 10801 62111;62112;62113;62114 75363;75364;75365;75366 75365 4 LHFQFEGGESR Unmodified 1305.6102 0.61019895 2120 Q86W56;Q86W56-3;Q86W56-2 PARG Poly(ADP-ribose) glycohydrolase yes no 0 0 0 0 By matching By MS/MS 4 0.707 1 2 1 2 2 42.872 42.988 3 0.00027213 11927 20211116_3442_TMUAki_TMT10x_S_F4 83.081 49.857 557680 914750 15220 1095300 531820 385380 506980 661540 562600 582070 738170 519370 854230 60058 1094000 510230 442590 517270 656300 576140 571760 706650 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 557680 914750 15220 1095300 531820 385380 506980 661540 562600 582070 738170 519370 854230 60058 1094000 510230 442590 517270 656300 576140 571760 706650 1 1 1 1 1 1 1 1 1 1 1 385920000 279340000 106580000 11639 2120 10802 62115;62116;62117;62118 75367;75368 75367 2 LHGELQDR Unmodified 966.48829 0.4882929 2918 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.957 1 2 2 1 4 2 28.026 27.91 2;3 0.00064885 8301 20211116_3441_TMUAki_TMT10x_S_F3 118.06 100.83 853910 1360400 19810 1251300 1108300 1181000 1118100 732060 763690 726560 991190 795200 1269000 90020 1283200 1064000 1197300 1122700 766800 800510 709820 949120 6 6 5 6 6 6 6 6 6 6 6 613210 951100 18618 895240 830900 955680 802220 491780 505710 502060 674040 571100 887270 71239 918140 797110 959430 806040 523730 533430 489910 645010 4 4 4 4 4 4 4 4 4 4 4 240700 409300 1191.5 356060 277430 225290 315910 240280 257980 224500 317150 224110 381720 18781 365050 266870 237920 316630 243070 267080 219910 304120 2 2 1 2 2 2 2 2 2 2 2 39731000 20738000 18993000 11640 2918 10803 62119;62120;62121;62122;62123;62124 75369;75370;75371;75372;75373;75374;75375;75376 75374 8 LHGKPIR Unmodified 819.50791 0.50790613 818 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.764 4 1 1 4 2 26.162 26.056 3 0.0040235 6651 20211116_3429_TMUAki_TMT10x_P_F2 101.21 54.548 2324700 3693500 54707 3006700 2435500 3054600 2515000 1689300 1818500 1754000 2477100 2164900 3443800 245270 3116600 2340600 3078200 2525300 1788400 1903900 1710300 2369200 4 4 4 4 4 4 4 4 4 4 4 633110 1009300 15273 896530 790410 1054200 724600 498090 620340 561300 728970 589600 941360 68926 924930 757150 1051700 735210 536380 639510 545590 699840 2 2 2 2 2 2 2 2 2 2 2 1691500 2684200 39434 2110200 1645100 2000400 1790400 1191200 1198200 1192700 1748100 1575300 2502500 176340 2191700 1583400 2026500 1790100 1252000 1264400 1164700 1669300 2 2 2 2 2 2 2 2 2 2 2 79295000 34487000 44808000 11641 818 10804 62125;62126;62127;62128;62129;62130 75377;75378;75379;75380;75381;75382 75379 6 LHGLNINYNCEICGNYTYR Unmodified 2373.063 0.063034322 1572 Q12874 SF3A3 Splicing factor 3A subunit 3 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 55.58 55.62 3 3.6416E-41 16381 20211116_3436_TMUAki_TMT10x_P_F8 210.09 200.4 3464400 5856800 0 5837700 4150200 6157100 4018200 3048200 2934500 3702400 3431500 3225500 5464900 146790 5961600 3975000 6182900 4049200 3275600 3050400 3589000 3294900 3 3 0 3 3 3 3 3 3 3 3 2505000 4258500 0 3968300 3217200 5312300 2889900 2087600 1976000 2606800 2285900 2332300 3972600 77802 4088900 3076200 5256500 2920200 2300800 2061200 2524600 2195500 2 2 0 2 2 2 2 2 2 2 2 959390 1598200 0 1869400 932980 844790 1128200 960560 958490 1095600 1145700 893200 1492300 68986 1872600 898830 926420 1128900 974830 989160 1064500 1099400 1 1 0 1 1 1 1 1 1 1 1 1662100000 986220000 675830000 11642 1572 10805 62131;62132 75383;75384;75385 75383 3 LHGLNINYNCEICGNYTYRGPK Unmodified 2655.2322 0.23222492 1572 Q12874 SF3A3 Splicing factor 3A subunit 3 yes yes 0 0 0 1 By MS/MS 2 0 1 1 53.79 53.595 4 1.48E-26 15742 20211116_3440_TMUAki_TMT10x_S_F2 168.79 154.02 1601200 3042600 0 3198600 2071500 1193300 1219000 1724200 1476200 1488100 1945400 1490600 2839700 107760 3222100 1962800 1351300 1289100 1719200 1507200 1463100 1862100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1601200 3042600 0 3198600 2071500 1193300 1219000 1724200 1476200 1488100 1945400 1490600 2839700 107760 3222100 1962800 1351300 1289100 1719200 1507200 1463100 1862100 1 1 0 1 1 1 1 1 1 1 1 341070000 0 341070000 11643 1572 10806 62133 75386 75386 1 LHGLPEQFLYGTATK Unmodified 1673.8777 0.8777066 1500 Q02880;Q02880-2 TOP2B DNA topoisomerase 2-beta yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 61.882 61.861 3 8.9019E-07 18851 20211116_3436_TMUAki_TMT10x_P_F8 110.44 97.301 25348000 43269000 205270 41252000 31158000 42832000 31274000 32693000 32359000 31603000 35191000 23603000 40367000 2369800 42250000 29891000 43309000 31750000 33719000 32973000 30910000 33860000 6 6 5 6 6 6 6 6 6 6 6 13829000 22632000 115860 21428000 17048000 29748000 18079000 17409000 17392000 16583000 18133000 12877000 21114000 1299600 22070000 16380000 29515000 18263000 18298000 17750000 16230000 17469000 3 3 3 3 3 3 3 3 3 3 3 11519000 20636000 89404 19824000 14110000 13084000 13195000 15284000 14967000 15021000 17058000 10726000 19253000 1070200 20181000 13511000 13794000 13487000 15421000 15223000 14681000 16390000 3 3 2 3 3 3 3 3 3 3 3 3306700000 1832900000 1473900000 11644 1500 10807 62134;62135;62136;62137 75387;75388;75389;75390;75391;75392 75389 6 LHGVNINVEASK Unmodified 1279.6884 0.68844927 2707 Q9BWF3;Q9BWF3-3;Q9BWF3-4;Q9BWF3-2;Q9BQ04 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 0 0 0 0 By MS/MS By MS/MS 6.15 1.23 2 2 2 6 1 5 8 41.114 41.329 3 4.0888E-08 10390 20211116_3444_TMUAki_TMT10x_S_F5 138.45 115.42 11149000 18393000 136300 18644000 15797000 17590000 12437000 12784000 12870000 11804000 14386000 10382000 17163000 1100500 18986000 15070000 17877000 12805000 13211000 13127000 11569000 13831000 10 10 7 10 10 10 10 10 10 10 10 7727500 12578000 93279 12418000 12155000 14520000 8979600 8411400 8345000 8069400 9771800 7195700 11736000 784760 12711000 11580000 14525000 9254700 8850200 8568000 7895100 9382400 5 5 4 5 5 5 5 5 5 5 5 3421600 5814600 43020 6226100 3642400 3070400 3457500 4372300 4524500 3734900 4614500 3186100 5427200 315750 6275400 3489700 3351800 3549800 4360700 4559400 3674000 4448700 5 5 3 5 5 5 5 5 5 5 5 2008300000 1316600000 691740000 11645 2707 10808 62138;62139;62140;62141;62142;62143;62144;62145;62146;62147;62148;62149;62150 75393;75394;75395;75396;75397;75398;75399;75400;75401;75402;75403;75404;75405;75406 75399 14 LHIFNAK Unmodified 841.48102 0.48102268 2146 Q8IWS0;Q8IWS0-5;Q8IWS0-3;Q8IWS0-2;Q8IWS0-4 PHF6 PHD finger protein 6 yes no 0 0 0 0 By MS/MS By matching 2.33 0.471 2 1 2 1 42.851 42.783 3 0.0029609 13004 20211116_3430_TMUAki_TMT10x_P_F3 100.82 49.134 2808000 3750700 63249 5017400 4804800 4216800 2659800 1812300 1848100 1881200 2841800 2615000 3504500 319710 5017100 4556900 4291100 2784900 1966000 1950900 1834500 2710600 2 2 2 2 2 2 2 2 2 2 2 2808000 3750700 63249 5017400 4804800 4216800 2659800 1812300 1848100 1881200 2841800 2615000 3504500 319710 5017100 4556900 4291100 2784900 1966000 1950900 1834500 2710600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 183700000 149150000 34551000 11646 2146 10809 62151;62152;62153 75407;75408 75408 2 LHIIEVGTPPTGNQPFPK Unmodified 1944.0469 0.046897198 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.79 3.05 4 3 7 5 9 56.952 57.025 3;4 3.8529E-12 19426 20211116_3435_TMUAki_TMT10x_P_F7 128.9 91.346 126700000 198600000 1797900 200840000 144840000 213860000 147160000 149320000 132920000 136920000 162570000 117980000 185320000 10989000 204920000 138990000 215610000 148710000 154710000 136900000 134240000 155910000 25 25 15 25 25 25 25 25 25 25 25 88988000 133620000 789370 136540000 103150000 175690000 108540000 103420000 93169000 95437000 113390000 82857000 124690000 6991900 139670000 99046000 174940000 109340000 108550000 96174000 93537000 108750000 15 15 8 15 15 15 15 15 15 15 15 37711000 64978000 1008500 64299000 41682000 38171000 38626000 45907000 39755000 41484000 49186000 35119000 60629000 3997100 65253000 39943000 40672000 39374000 46152000 40729000 40698000 47156000 10 10 7 10 10 10 10 10 10 10 10 24252000000 13903000000 10349000000 11647 1471 10810 62154;62155;62156;62157;62158;62159;62160;62161;62162;62163;62164;62165;62166;62167 75409;75410;75411;75412;75413;75414;75415;75416;75417;75418;75419;75420;75421;75422;75423;75424;75425;75426;75427;75428;75429;75430;75431;75432;75433;75434;75435;75436;75437 75417 29 LHIIEVGTPPTGNQPFPKK Unmodified 2072.1419 0.14186022 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 1 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 54.591 54.443 4 2.8732E-12 17413 20211116_3429_TMUAki_TMT10x_P_F2 126.63 115.37 13096000 23537000 310340 24334000 20308000 19779000 13543000 16616000 18544000 16843000 18559000 12195000 21965000 1349500 24701000 19313000 20359000 14246000 17060000 18647000 16440000 17903000 3 3 2 3 3 3 3 3 3 3 3 4740700 8868100 0 8747400 10619000 12682000 6563500 5466400 7178100 6155500 6455900 4413100 8274400 348950 8991100 10072000 12515000 6888700 5942700 7250000 5983400 6250200 1 1 0 1 1 1 1 1 1 1 1 8355100 14669000 310340 15587000 9688700 7096600 6979800 11149000 11366000 10687000 12103000 7781800 13691000 1000600 15709000 9240700 7844300 7357300 11118000 11397000 10457000 11653000 2 2 2 2 2 2 2 2 2 2 2 2204100000 1547100000 656960000 11648 1471 10811 62168;62169;62170 75438;75439;75440 75438 3 LHILASGADVTSANAK Unmodified 1566.8366 0.83657007 2929 Q9NRL2;Q9NRL2-2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 46.865 46.885 3 0.10355 12878 20211116_3436_TMUAki_TMT10x_P_F8 22.431 10.516 3696200 6104100 50821 6445700 5507300 8042800 4697000 8337600 8864200 7882000 7253600 3441400 5697000 316200 6575400 5259300 8101600 4935800 8448600 8778300 7716700 7047100 2 2 1 2 2 2 2 2 2 2 2 1938000 3213400 0 3102100 3561000 5766100 2844200 4512800 4428400 4336300 4007500 1803900 2998100 120430 3212300 3392400 5681600 2971500 4646200 4420900 4242300 3879000 1 1 0 1 1 1 1 1 1 1 1 1758200 2890600 50821 3343600 1946300 2276700 1852900 3824900 4435800 3545700 3246100 1637400 2699000 195760 3363100 1866900 2420000 1964300 3802400 4357400 3474400 3168200 1 1 1 1 1 1 1 1 1 1 1 235000000 118240000 116760000 11649 2929 10812 62171;62172 75441 75441 1 LHISPSNMTNQNTPEYMEK Oxidation (M) 2249.0093 0.0092674174 2362 Q92769;Q92769-3 HDAC2 Histone deacetylase 2 yes no 0 0 1 0 By MS/MS 7 0 1 1 44.329 44.834 3 7.6722E-11 13272 20211116_3435_TMUAki_TMT10x_P_F7 118.72 107.29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11650 2362 10813 62173 75442 75442 2698 1 LHISPSNMTNQNTPEYMEK Unmodified 2233.0144 0.014352795 2362 Q92769;Q92769-3 HDAC2 Histone deacetylase 2 yes no 0 0 0 0 By MS/MS By MS/MS 6.25 0.829 1 1 2 3 1 49.914 50.27 3 0.088945 16003 20211116_3446_TMUAki_TMT10x_S_F7 26.78 1.7745 12155000 21178000 57125 23822000 22810000 25208000 20088000 8835500 8808500 10188000 15134000 11317000 19772000 1180100 24137000 21804000 25227000 20169000 9850100 9679200 9894800 14404000 6 6 3 6 6 6 6 6 6 6 6 10540000 18164000 57125 20526000 21459000 24188000 18986000 7551900 7577900 8751700 13042000 9814200 16958000 1057400 20828000 20516000 24042000 19034000 8553700 8402200 8498000 12412000 5 5 3 5 5 5 5 5 5 5 5 1614300 3014300 0 3296800 1350800 1019400 1102000 1283700 1230600 1436600 2092800 1503000 2813700 122670 3309300 1288500 1185000 1134800 1296400 1276900 1396800 1992100 1 1 0 1 1 1 1 1 1 1 1 1932400000 1646900000 285530000 11651 2362 10813 62174;62175;62176;62177 75443 75443 1 LHIVQVVCK Unmodified 1094.627 0.62703499 80 O00299 CLIC1 Chloride intracellular channel protein 1 yes yes 0 0 0 0 By MS/MS 2 0 1 1 46.278 45.986 3 0.00099311 13975 20211116_3429_TMUAki_TMT10x_P_F2 80.438 60.274 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11652 80 10814 62178 75444 75444 1 LHKNDIAINELMK Oxidation (M) 1553.8236 0.82356254 1162 P51665 PSMD7 26S proteasome non-ATPase regulatory subunit 7 yes yes 0 0 1 1 By MS/MS By MS/MS 7 0 2 1 1 44.263 44.778 4 0.0026226 13306 20211116_3435_TMUAki_TMT10x_P_F7 65.895 52.759 3258700 5755200 34935 5126300 4966400 5096500 3661900 5446300 5342700 4897000 5235200 3034400 5367800 318840 5273600 4730800 5201600 3834700 5503400 5357900 4805300 5053500 3 3 2 3 3 3 3 3 3 3 3 1087100 1999000 0 1679800 2647100 2909500 1607700 1921300 1553300 1622300 1813800 1012100 1864100 104170 1754600 2511500 2866000 1683400 1994300 1591800 1596800 1741700 1 1 0 1 1 1 1 1 1 1 1 2171600 3756100 34935 3446500 2319300 2186900 2054300 3525100 3789400 3274700 3421400 2022300 3503700 214670 3519000 2219300 2335700 2151300 3509000 3766100 3208600 3311900 2 2 2 2 2 2 2 2 2 2 2 532600000 357410000 175190000 11653 1162 10815 62179;62180 75445;75446;75447 75445 1548 3 LHLEGQQVR Unmodified 1078.5883 0.5883413 2348 Q92614;Q92614-4;Q92614-3;Q92614-5;Q92614-2 MYO18A Unconventional myosin-XVIIIa yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 34.881 34.951 3 0.074236 8764 20211116_3433_TMUAki_TMT10x_P_F5 35.445 4.8809 1046700 1602600 2401.9 1621600 1524100 1440500 1102500 1321100 1207200 1077200 1471600 974580 1495500 91799 1650300 1450600 1475900 1143600 1342000 1232900 1062100 1411400 2 2 1 2 2 2 2 2 2 2 2 581680 831200 2401.9 859100 929540 1023100 565440 666240 610300 536670 760560 541620 775700 55336 876900 882280 1024100 593970 691520 624250 529480 729040 1 1 1 1 1 1 1 1 1 1 1 465030 771440 0 762550 594530 417390 537100 654890 596880 540550 711040 432950 719800 36463 773400 568370 451830 549660 650440 608660 532640 682380 1 1 0 1 1 1 1 1 1 1 1 132370000 65320000 67047000 11654 2348 10816 62181;62182 75448;75449 75448 2 LHLGFIEIR Unmodified 1096.6393 0.63931423 2486 Q9Y383;Q96HJ9-2;Q9Y383-3;Q9Y383-2 LUC7L2 Putative RNA-binding protein Luc7-like 2 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 62.929 63.022 3 2.2595E-06 19355 20211116_3436_TMUAki_TMT10x_P_F8 160.56 109.49 2389000 3449700 1365.1 3686700 2566100 4406100 2651100 2017300 2441600 2590000 2512100 2224100 3219800 164320 3755000 2460300 4390600 2678200 2188700 2495600 2505900 2421100 3 3 1 3 3 3 3 3 3 3 3 2389000 3449700 1365.1 3686700 2566100 4406100 2651100 2017300 2441600 2590000 2512100 2224100 3219800 164320 3755000 2460300 4390600 2678200 2188700 2495600 2505900 2421100 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 863830000 863830000 0 11655 2486 10817 62183;62184;62185;62186 75450;75451;75452;75453;75454 75451 5 LHLGSTPHNLTDANIHELAR Unmodified 2208.14 0.13996274 3187 Q9UN37 VPS4A Vacuolar protein sorting-associated protein 4A yes yes 0 0 0 0 By MS/MS 6 0 1 1 42.538 42.579 5 1.8174E-18 10490 20211116_3434_TMUAki_TMT10x_P_F6 154.55 138.86 515880 849250 35141 915910 1255100 1146700 799140 594270 593110 596990 708740 480590 792690 85873 933120 1194100 1141500 828070 632170 616510 582940 680120 1 1 1 1 1 1 1 1 1 1 1 515880 849250 35141 915910 1255100 1146700 799140 594270 593110 596990 708740 480590 792690 85873 933120 1194100 1141500 828070 632170 616510 582940 680120 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 79178000 79178000 0 11656 3187 10818 62187 75455 75455 1 LHLPIGDSASNLLFK Unmodified 1623.8984 0.89844205 2926 Q9NRF8 CTPS2 CTP synthase 2 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 74.113 73.985 3 2.357E-10 24047 20211116_3440_TMUAki_TMT10x_S_F2 138.02 115.49 11788000 19181000 243390 16451000 12478000 15408000 13882000 10452000 9933100 11745000 13585000 10977000 17888000 1191800 16960000 12013000 15650000 13885000 10916000 10408000 11417000 12992000 3 3 2 3 3 3 3 3 3 3 3 4905400 7610500 0 6766200 4301300 7670700 4986500 4370700 3825700 4589100 5153700 4567200 7098300 376240 6975800 4140100 7684500 4986200 4616900 3989900 4472900 4930500 1 1 0 1 1 1 1 1 1 1 1 6882300 11571000 243390 9684400 8176500 7737300 8895000 6081100 6107400 7155800 8431300 6409900 10790000 815550 9983800 7872800 7965100 8898700 6298600 6417700 6944500 8061400 2 2 2 2 2 2 2 2 2 2 2 790450000 403510000 386940000 11657 2926 10819 62188;62189 75456;75457;75458 75457 3 LHLSGIDANPNALFPPVEFPAPR Unmodified 2471.2961 0.29612903 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS 4 0 1 1 77.808 77.759 3 9.6477E-12 26191 20211116_3442_TMUAki_TMT10x_S_F4 118.16 106.51 2072400 3573600 55112 3426700 2994000 2478100 2875200 2390200 2129800 2346300 2775100 1930000 3334000 236080 3492000 2871100 2581100 2899600 2433400 2222300 2293300 2657000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2072400 3573600 55112 3426700 2994000 2478100 2875200 2390200 2129800 2346300 2775100 1930000 3334000 236080 3492000 2871100 2581100 2899600 2433400 2222300 2293300 2657000 1 1 1 1 1 1 1 1 1 1 1 756890000 0 756890000 11658 1092 10820 62190 75459 75459 1 LHLVDLAGSER Unmodified 1208.6513 0.65133548 416 O95239;O95239-2;Q2VIQ3;Q9Y496;Q6ZMV9;Q6ZMV9-3 KIF4A;KIF4B;KIF3A;KIF6 Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B;Kinesin-like protein KIF3A;Kinesin-like protein KIF6 yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 46.439 46.603 3 7.1741E-06 12159 20211116_3444_TMUAki_TMT10x_S_F5 111.5 0 907760 1479600 11422 1616200 796610 788990 774360 1323400 1303300 1179800 1247600 845300 1381100 84348 1626800 763960 866800 803000 1314300 1300700 1158200 1205200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 907760 1479600 11422 1616200 796610 788990 774360 1323400 1303300 1179800 1247600 845300 1381100 84348 1626800 763960 866800 803000 1314300 1300700 1158200 1205200 1 1 1 1 1 1 1 1 1 1 1 161790000 0 161790000 11659 416 10821 62191;62192 75460;75461 75461 2 LHLYNSLTR Unmodified 1115.6087 0.60874239 1105 P49589-3;P49589;P49589-2 CARS Cysteine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 38.162 38.19 3 8.9939E-05 13233 20211116_3441_TMUAki_TMT10x_S_F3 96.027 60.927 75819 97640 1714.1 109150 159020 162920 88652 95358 95297 89207 95052 70608 91152 9048.6 111340 150810 161130 93809 100180 96649 87378 91701 1 1 1 1 1 1 1 1 1 1 1 75819 97640 1714.1 109150 159020 162920 88652 95358 95297 89207 95052 70608 91152 9048.6 111340 150810 161130 93809 100180 96649 87378 91701 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5726800 5726800 0 11660 1105 10822 62193;62194 75462;75463 75463 2 LHNAIEGGTQLSR Unmodified 1394.7266 0.72662569 294 O60832;O60832-2 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 28.822 28.835 3 4.3031E-05 8180 20211116_3433_TMUAki_TMT10x_P_F5 97.631 71.033 1229700 1873900 17449 2039700 2606200 2277500 1744100 1386200 1730800 1210000 1669900 1145100 1749200 137490 2072700 2478300 2285500 1813800 1449100 1759200 1189000 1612800 2 2 2 2 2 2 2 2 2 2 2 865120 1205900 15094 1344400 2174400 1904400 1284800 1014500 1282300 793620 1176400 805620 1125800 104130 1370100 2063400 1885500 1349600 1069800 1300900 784190 1138100 1 1 1 1 1 1 1 1 1 1 1 364580 668010 2354.2 695370 431860 373140 459350 371730 448460 416360 493580 339470 623430 33362 702640 414920 399970 464160 379350 458310 404800 474740 1 1 1 1 1 1 1 1 1 1 1 156520000 122550000 33971000 11661 294 10823 62195;62196 75464;75465 75464 2 LHNFHQLSAPQPCFTFSHPNRDPMIDNNR Oxidation (M) 3505.6157 0.61565881 128 O14744;O14744-5;O14744-2;O14744-3;O14744-4 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed yes no 0 0 1 1 By MS/MS By MS/MS 2.25 0.433 3 1 1 3 45.023 44.862 5;6 3.4553E-13 13434 20211116_3429_TMUAki_TMT10x_P_F2 111.55 107.65 2944700 5520700 43029 5857000 3729900 3629500 2902500 5197600 4803900 4301400 4687300 2741700 5152600 252660 5918000 3555500 3870100 3046300 5178600 4799800 4237900 4525300 6 6 3 6 6 6 6 6 6 6 6 740110 1485300 596.32 1380700 1438500 1664200 1011100 1246700 1104200 994650 1144600 689120 1385600 71698 1420200 1368600 1668500 1050900 1281100 1120700 981810 1102900 1 1 1 1 1 1 1 1 1 1 1 2204500 4035400 42433 4476300 2291400 1965300 1891400 3951000 3699700 3306800 3542800 2052600 3767100 180970 4497800 2186800 2201700 1995400 3897600 3679100 3256100 3422400 5 5 2 5 5 5 5 5 5 5 5 1692600000 881910000 810720000 11662 128 10824 62197;62198;62199;62200 75466;75467;75468;75469;75470;75471 75466 96 6 LHNFHQLSAPQPCFTFSHPNRDPMIDNNR Unmodified 3489.6207 0.62074419 128 O14744;O14744-5;O14744-2;O14744-3;O14744-4 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed yes no 0 0 0 1 By MS/MS 3 0 1 1 48.64 48.288 6 3.4805E-09 16441 20211116_3441_TMUAki_TMT10x_S_F3 85.489 79.887 4406200 6938700 31034 7952500 3916600 3482100 3861600 5636000 5571800 4750900 6000700 4102700 6478400 368430 7974400 3754700 3871500 3972800 5595100 5608700 4676400 5775300 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4406200 6938700 31034 7952500 3916600 3482100 3861600 5636000 5571800 4750900 6000700 4102700 6478400 368430 7974400 3754700 3871500 3972800 5595100 5608700 4676400 5775300 3 3 1 3 3 3 3 3 3 3 3 218810000 0 218810000 11663 128 10824 62201 75472;75473;75474 75473 3 LHNQQALSSSIEEGLR Unmodified 1780.9068 0.9067749 1530 Q06587;Q06587-2 RING1 E3 ubiquitin-protein ligase RING1 yes no 0 0 0 0 By MS/MS 4 0 1 1 43.491 43.706 3 4.7444E-15 12220 20211116_3442_TMUAki_TMT10x_S_F4 130.95 115.41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11664 1530 10825 62202 75475 75475 1 LHPCPPPDFFRPCR Unmodified 1794.8446 0.84464911 2817 Q9H6R4;Q9H6R4-2;Q9H6R4-4;Q9H6R4-3 NOL6 Nucleolar protein 6 yes no 0 0 0 1 By MS/MS By MS/MS 2.8 0.748 2 2 1 2 3 44.898 44.82 4 9.3981E-14 13825 20211116_3430_TMUAki_TMT10x_P_F3 146.07 135.03 5119400 7766700 83601 9143100 8403600 8129400 5797800 5881700 5632000 4987200 6960200 4767100 7252300 526820 9215100 7995900 8293700 6012100 6066800 5784000 4907600 6673100 6 6 4 6 6 6 6 6 6 6 6 3636900 5270000 43471 6355300 7032700 6960500 4558400 4124700 3955600 3461500 4795800 3386500 4921500 377890 6415800 6683000 6989800 4734500 4317000 4080400 3408000 4600300 4 4 3 4 4 4 4 4 4 4 4 1482500 2496800 40130 2787800 1370800 1168900 1239500 1757000 1676400 1525700 2164400 1380600 2330800 148930 2799300 1312900 1303900 1277700 1749800 1703700 1499600 2072800 2 2 1 2 2 2 2 2 2 2 2 1273600000 687930000 585640000 11665 2817 10826 62203;62204;62205;62206;62207 75476;75477;75478;75479;75480;75481 75479 6 LHPEMSNLDLTK Oxidation (M) 1412.697 0.69696505 705 P17480;P17480-2 UBTF Nucleolar transcription factor 1 yes no 0 0 1 0 By MS/MS By MS/MS 4 0 2 1 1 41.671 41.812 3 0.001152 11095 20211116_3431_TMUAki_TMT10x_P_F4 69.03 52.456 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11666 705 10827 62208;62209 75482;75483 75482 787 2 LHPVILASIVDSYER Unmodified 1710.9305 0.93047046 81 O00303 EIF3F Eukaryotic translation initiation factor 3 subunit F yes yes 0 0 0 0 By MS/MS By MS/MS 5.75 2.82 2 1 2 3 4 4 69.102 69.173 2;3 7.7782E-38 21404 20211116_3447_TMUAki_TMT10x_S_F8 242.8 238 15433000 23260000 138650 22040000 17133000 21135000 17306000 18483000 16647000 18880000 18374000 14369000 21700000 1264700 22557000 16430000 21527000 17524000 18938000 17025000 18423000 17671000 8 8 6 8 8 8 8 8 8 8 8 7026200 8823700 49651 9187600 6580900 11385000 7556500 7613200 6551300 7954100 7401000 6541100 8234800 454730 9380000 6326700 11378000 7582700 7941200 6738900 7754400 7113200 3 3 1 3 3 3 3 3 3 3 3 8406900 14437000 88994 12853000 10552000 9749300 9749200 10870000 10095000 10926000 10973000 7828300 13465000 809970 13177000 10103000 10149000 9941700 10997000 10286000 10668000 10558000 5 5 5 5 5 5 5 5 5 5 5 9735400000 5084000000 4651400000 11667 81 10828 62210;62211;62212;62213;62214;62215;62216;62217 75484;75485;75486;75487;75488;75489;75490;75491;75492 75492 9 LHPVILASIVDSYERR Unmodified 1867.0316 0.031581485 81 O00303 EIF3F Eukaryotic translation initiation factor 3 subunit F yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 63.199 62.886 4 1.1609E-35 20836 20211116_3429_TMUAki_TMT10x_P_F2 207.31 182.76 7518100 12155000 71714 11174000 8046500 8782500 8371000 5308500 4400400 5858300 8239300 7000100 11339000 634040 11433000 7723700 9016500 8351200 5589100 4786600 5698900 7829300 5 5 3 5 5 5 5 5 5 5 5 3246600 5086200 38977 4778300 3188300 5063500 3795600 2123200 1748200 2337900 3540300 3023200 4744800 299070 4900700 3074300 5074700 3754900 2313500 1931700 2274500 3359700 2 2 1 2 2 2 2 2 2 2 2 4271500 7069200 32738 6395900 4858200 3719000 4575400 3185300 2652200 3520400 4699000 3976900 6593800 334970 6532400 4649400 3941800 4596300 3275600 2854900 3424400 4469600 3 3 2 3 3 3 3 3 3 3 3 4204200000 2385300000 1818900000 11668 81 10829 62218;62219;62220;62221 75493;75494;75495;75496;75497 75493 5 LHQEDNDYINASLIK Unmodified 1771.8741 0.87407779 713 P18031 PTPN1 Tyrosine-protein phosphatase non-receptor type 1 yes yes 0 0 0 0 By MS/MS 5 0 1 1 53.179 53.379 3 4.9029E-06 16017 20211116_3433_TMUAki_TMT10x_P_F5 101.36 84.958 5665300 9002200 74760 9787500 10863000 14341000 7018600 7521600 7665700 7115200 7435400 5275500 8403000 612160 9997500 10323000 14175000 7340300 7979500 7762000 6965800 7179800 2 2 2 2 2 2 2 2 2 2 2 5665300 9002200 74760 9787500 10863000 14341000 7018600 7521600 7665700 7115200 7435400 5275500 8403000 612160 9997500 10323000 14175000 7340300 7979500 7762000 6965800 7179800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 339800000 339800000 0 11669 713 10830 62222 75498;75499 75498 2 LHQLAMQQSHFPMTHGNTGFSGIESSSPEVK 2 Oxidation (M) 3413.5769 0.57687327 1792 Q15366;Q15366-6;Q15366-3;Q15366-2;Q15366-4;Q15366-5 PCBP2 Poly(rC)-binding protein 2 yes no 0 0 2 0 By MS/MS By matching 7.33 0.471 2 1 2 1 44.772 45.161 5 1.7451E-10 13395 20211116_3435_TMUAki_TMT10x_P_F7 91.819 77.002 2215500 3770700 16592 4095200 3316400 7157100 2567000 3833300 4288800 3486500 3064800 2062800 3519700 184930 4200700 3160100 7027600 2696300 4054800 4244300 3419400 2994400 3 3 1 3 3 3 3 3 3 3 3 2215500 3770700 16592 4095200 3316400 7157100 2567000 3833300 4288800 3486500 3064800 2062800 3519700 184930 4200700 3160100 7027600 2696300 4054800 4244300 3419400 2994400 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2709000000 2607600000 101360000 11670 1792 10831 62223;62224;62225 75500;75501;75502 75501 2413;2414 3 LHQVYFDAPTCR Unmodified 1505.7085 0.70853279 555 P08247 SYP Synaptophysin yes yes 0 0 0 0 By MS/MS 7 0 2 2 37.458 38.139 3 3.6287E-08 11723 20211116_3446_TMUAki_TMT10x_S_F7 117.21 109.28 137960 222250 3512.2 258210 116800 115450 120530 100170 97966 97858 166910 128480 207520 14415 258740 112300 126080 121370 102540 103100 95668 158880 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 137960 222250 3512.2 258210 116800 115450 120530 100170 97966 97858 166910 128480 207520 14415 258740 112300 126080 121370 102540 103100 95668 158880 1 1 1 1 1 1 1 1 1 1 1 6226600 0 6226600 11671 555 10832 62226;62227 75503;75504 75504 2 LHQYDGSIVVIQNPAR Unmodified 1808.9533 0.95333116 2255 Q8NFZ8 CADM4 Cell adhesion molecule 4 yes yes 0 0 0 0 By matching By MS/MS 7 0 2 1 1 47.471 48.01 3 2.3711E-15 15041 20211116_3446_TMUAki_TMT10x_S_F7 151.8 134.31 1376900 2331300 23305 2686900 1379100 1237100 1042000 2313700 1971400 1702900 2081600 1282200 2176600 135900 2694300 1315300 1373900 1103400 2279800 1968800 1688300 2004700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1376900 2331300 23305 2686900 1379100 1237100 1042000 2313700 1971400 1702900 2081600 1282200 2176600 135900 2694300 1315300 1373900 1103400 2279800 1968800 1688300 2004700 1 1 1 1 1 1 1 1 1 1 1 247140000 141600000 105540000 11672 2255 10833 62228;62229 75505 75505 1 LHSIILANPQDNENFIATVR Unmodified 2264.1913 0.1913296 2879 Q9NP66 HMG20A High mobility group protein 20A yes yes 0 0 0 0 By MS/MS 8 0 1 1 64.137 64.308 3 2.3565E-11 19924 20211116_3436_TMUAki_TMT10x_P_F8 119.38 94.593 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11673 2879 10834 62230 75506 75506 1 LHSLLGDYYQAIK Unmodified 1519.8035 0.80347903 3224 Q9Y262;Q9Y262-2 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 66.053 65.874 3 2.5449E-06 22124 20211116_3429_TMUAki_TMT10x_P_F2 109.24 67.994 53180000 93815000 2839600 87053000 61371000 108870000 64964000 79702000 73299000 71455000 73174000 49537000 87514000 7170100 89612000 59108000 108910000 65966000 82260000 74200000 70126000 70592000 6 6 6 6 6 6 6 6 6 6 6 28771000 50843000 1739400 46798000 39144000 84245000 39652000 44849000 42330000 42561000 40534000 26802000 47427000 4151600 48587000 37652000 82628000 40277000 47519000 42882000 41662000 39157000 3 3 3 3 3 3 3 3 3 3 3 24409000 42972000 1100200 40255000 22227000 24621000 25311000 34853000 30969000 28894000 32641000 22735000 40087000 3018400 41025000 21456000 26277000 25688000 34741000 31318000 28465000 31436000 3 3 3 3 3 3 3 3 3 3 3 3010400000 2111300000 899160000 11674 3224 10835 62231;62232;62233 75507;75508;75509;75510;75511;75512 75509 6 LHTAVVSTPPR Unmodified 1176.6615 0.66150624 2705 Q9BW92;Q9BW92-2 TARS2 Threonine--tRNA ligase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 31.186 31.235 3 9.7832E-06 8457 20211116_3439_TMUAki_TMT10x_S_F1 107.03 90 158470 286780 807.89 278820 166300 159530 187010 155290 155780 147290 228810 147550 267570 14001 283220 160020 169780 187640 157860 162440 144180 218460 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 158470 286780 807.89 278820 166300 159530 187010 155290 155780 147290 228810 147550 267570 14001 283220 160020 169780 187640 157860 162440 144180 218460 1 1 1 1 1 1 1 1 1 1 1 13703000 0 13703000 11675 2705 10836 62234;62235 75513;75514 75514 2 LHTLEEEKEELAQYQK Unmodified 1986.9898 0.98983583 3219 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 1 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 59.043 59.017 4 3.5728E-21 18018 20211116_3431_TMUAki_TMT10x_P_F4 169.04 147.51 29240000 48190000 215230 50502000 44483000 60049000 36020000 38367000 37784000 37878000 39500000 27227000 44975000 2814900 51500000 42451000 60098000 37034000 40089000 38423000 37014000 38051000 5 5 4 5 5 5 5 5 5 5 5 22121000 35518000 149290 36615000 37903000 53702000 30343000 29269000 28920000 29188000 29709000 20598000 33146000 2170800 37532000 36161000 53105000 31129000 30989000 29511000 28509000 28634000 3 3 2 3 3 3 3 3 3 3 3 7118400 12672000 65944 13887000 6579800 6346600 5677100 9098500 8864400 8690200 9791300 6628400 11829000 644080 13969000 6290300 6992400 5904400 9099600 8911400 8504100 9416600 2 2 2 2 2 2 2 2 2 2 2 2689100000 1899700000 789400000 11676 3219 10837 62236;62237;62238;62239 75515;75516;75517;75518;75519 75516 5 LHTNFHIPK Unmodified 1105.6033 0.60326308 3135 Q9UIG0;Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 39.12 39.048 4 0.0049632 9621 20211116_3428_TMUAki_TMT10x_P_F1 68.735 42.137 1615100 2351700 100290 2935000 3168000 2923300 1808500 1844300 2105400 1711000 2330200 1504600 2196600 249120 2952800 3009500 2954600 1914800 1925600 2136900 1676600 2240900 4 4 4 4 4 4 4 4 4 4 4 955860 1350000 53284 1670400 2532700 2127200 1175300 1030200 1123300 928210 1292500 890400 1260800 150990 1688300 2397500 2114200 1261500 1099700 1151100 910740 1241600 2 2 2 2 2 2 2 2 2 2 2 659250 1001800 47002 1264600 635290 796140 633270 814100 982130 782830 1037700 614170 935750 98125 1264600 611940 840350 653260 825880 985860 765840 999300 2 2 2 2 2 2 2 2 2 2 2 213470000 121610000 91864000 11677 3135 10838 62240;62241;62242;62243 75520;75521;75522;75523 75520 4 LHVDPENFR Unmodified 1125.5567 0.55670682 53 CON__Q3SX09;P68871;P02042 HBB;HBD Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin;Hemoglobin subunit delta yes no 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 2 3 39.589 39.608 3 0.0002174 10289 20211116_3431_TMUAki_TMT10x_P_F4 117.89 99.11 + 3220600 5090200 126270 5801700 6409900 5476600 3760700 4376100 4525000 4082300 4836700 2999600 4752400 429350 5863600 6087200 5574500 3976800 4496100 4581000 3999100 4656100 6 6 6 6 6 6 6 6 6 6 6 2067900 3096500 76769 3667200 5338000 4385900 2537500 2536300 2661500 2470400 2951600 1926000 2891500 288790 3711600 5052500 4382200 2724200 2670100 2712500 2415400 2838300 3 3 3 3 3 3 3 3 3 3 3 1152700 1993700 49496 2134500 1072000 1090700 1223200 1839800 1863400 1612000 1885100 1073700 1860900 140570 2152000 1034700 1192300 1252700 1826000 1868500 1583700 1817800 3 3 3 3 3 3 3 3 3 3 3 715570000 504790000 210780000 11678 53 10839 62244;62245;62246;62247;62248 75524;75525;75526;75527;75528;75529 75524 6 LHVEVAK Unmodified 794.46504 0.46503826 239 O43719 HTATSF1 HIV Tat-specific factor 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.222 35.276 3 0.0011721 7506 20211116_3444_TMUAki_TMT10x_S_F5 119.89 47.654 3326300 4840500 5792.5 6223400 4243600 4745600 3681800 2779500 2698800 2777000 3654900 3097100 4521900 291640 6229100 4055000 4881400 3733600 2925200 2822500 2712300 3496100 3 3 2 3 3 3 3 3 3 3 3 2313800 3362500 3206.4 4236600 3182400 3880300 2767000 1945800 1915600 1931300 2548100 2154400 3140800 204610 4255000 3041000 3931500 2802000 2075500 2008500 1886800 2438400 2 2 1 2 2 2 2 2 2 2 2 1012500 1478000 2586.1 1986800 1061200 865290 914880 833750 783200 845700 1106800 942710 1381100 87032 1974100 1014000 949960 931580 849650 814020 825470 1057700 1 1 1 1 1 1 1 1 1 1 1 279650000 201350000 78299000 11679 239 10840 62249;62250;62251 75530;75531;75532 75532 3 LHVGNISPTCTNK Unmodified 1439.7191 0.71909747 2707 Q9BWF3;Q9BWF3-3;Q9BWF3-4;Q9BWF3-2 RBM4 RNA-binding protein 4 yes no 0 0 0 0 By MS/MS 1 0 1 1 38.539 38.426 3 8.289E-05 11343 20211116_3439_TMUAki_TMT10x_S_F1 93.011 76.873 615500 1133300 2181.2 1411600 459750 399970 439320 665420 681370 514180 880820 573110 1058600 50880 1405300 440440 475820 454180 658630 689660 508410 843520 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 615500 1133300 2181.2 1411600 459750 399970 439320 665420 681370 514180 880820 573110 1058600 50880 1405300 440440 475820 454180 658630 689660 508410 843520 1 1 1 1 1 1 1 1 1 1 1 39113000 0 39113000 11680 2707 10841 62252 75533 75533 1 LHYCVSCAIHSK Unmodified 1473.6857 0.68568885 1373 P62854;Q5JNZ5 RPS26;RPS26P11 40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.11 1.37 4 3 1 1 5 4 35.076 35.039 3;4 4.4461E-17 8501 20211116_3428_TMUAki_TMT10x_P_F1 210.79 170.72 9744900 15812000 127900 19174000 18271000 14980000 10203000 8847600 6935600 7188400 12086000 9074200 14767000 1019900 19260000 17322000 15382000 10670000 9255500 7381600 7088900 11499000 10 10 7 10 10 10 10 10 10 10 10 6814500 10731000 90667 13176000 15100000 13075000 8040900 6165700 4405100 4768300 8228000 6345400 10023000 738830 13268000 14305000 13171000 8412700 6575700 4776200 4714500 7819000 7 7 4 7 7 7 7 7 7 7 7 2930500 5080900 37235 5997800 3171200 1905200 2162300 2682000 2530500 2420200 3857700 2728800 4744400 281030 5992700 3017600 2210800 2257500 2679800 2605300 2374400 3680300 3 3 3 3 3 3 3 3 3 3 3 2192100000 1705700000 486370000 11681 1373 10842 62253;62254;62255;62256;62257;62258;62259;62260;62261 75534;75535;75536;75537;75538;75539;75540;75541;75542;75543 75535 10 LHYGLPVVVK Unmodified 1123.6754 0.67536539 923 P35222 CTNNB1 Catenin beta-1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 53.726 53.552 3 0.003873 17532 20211116_3430_TMUAki_TMT10x_P_F3 66.621 47.009 1782600 2691000 10732 2548600 2940000 3584400 2277000 2257100 2136200 2110800 2095300 1659900 2510500 174000 2625600 2803000 3557800 2340000 2357500 2177900 2067600 2022500 1 1 1 1 1 1 1 1 1 1 1 1782600 2691000 10732 2548600 2940000 3584400 2277000 2257100 2136200 2110800 2095300 1659900 2510500 174000 2625600 2803000 3557800 2340000 2357500 2177900 2067600 2022500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 120450000 120450000 0 11682 923 10843 62262 75544 75544 1 LHYGTDPCTGQPFR Unmodified 1647.7464 0.74637486 2250 Q8NFF5;Q8NFF5-3;Q8NFF5-2;Q8NFF5-4;Q8NFF5-5 FLAD1 FAD synthase;Molybdenum cofactor biosynthesis protein-like region;FAD synthase region yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 38.237 38.322 3 2.3215E-06 9084 20211116_3434_TMUAki_TMT10x_P_F6 107.65 99.543 1093900 1645300 0 2101700 2398700 2383700 1542600 1367200 1505300 1240700 1474900 1018400 1537000 91064 2116000 2277300 2388100 1608400 1437600 1531900 1217000 1423700 3 3 0 3 3 3 3 3 3 3 3 1035200 1558400 0 1992200 2355600 2332200 1489000 1317400 1452800 1170800 1391800 963720 1455700 87112 2006800 2235800 2332100 1554600 1386300 1477400 1149500 1344500 2 2 0 2 2 2 2 2 2 2 2 58702 86988 0 109500 43058 51466 53603 49768 52501 69963 83083 54652 81253 3951.8 109250 41506 55972 53786 51291 54544 67498 79201 1 1 0 1 1 1 1 1 1 1 1 94862000 85664000 9198100 11683 2250 10844 62263;62264;62265 75545;75546;75547;75548 75545 4 LHYGTDPCTGQPFRFPLVSVR Unmodified 2446.2216 0.22158387 2250 Q8NFF5;Q8NFF5-3;Q8NFF5-2;Q8NFF5-4;Q8NFF5-5 FLAD1 FAD synthase;Molybdenum cofactor biosynthesis protein-like region;FAD synthase region yes no 0 0 0 1 By MS/MS 4 0.816 1 1 1 3 61.552 61.556 4 5.0727E-26 19094 20211116_3431_TMUAki_TMT10x_P_F4 160.67 147.26 9566400 14765000 39130 15039000 11400000 15939000 11933000 9893500 7895200 8963700 11710000 8906700 13779000 740150 15336000 10939000 16046000 11951000 10336000 8344100 8792700 11178000 3 3 1 3 3 3 3 3 3 3 3 9566400 14765000 39130 15039000 11400000 15939000 11933000 9893500 7895200 8963700 11710000 8906700 13779000 740150 15336000 10939000 16046000 11951000 10336000 8344100 8792700 11178000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1229600000 1229600000 0 11684 2250 10845 62266;62267;62268 75549;75550;75551 75549 3 LHYNEGLNIK Unmodified 1199.6299 0.62987176 999 P41236;Q6NXS1 PPP1R2;PPP1R2P3 Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3 yes no 0 0 0 0 By MS/MS 6 0 1 1 43.154 43.32 3 0.03231 11092 20211116_3445_TMUAki_TMT10x_S_F6 48.073 28.975 2131700 3155500 158780 4583300 1877600 2278200 2169100 3350600 3866600 2916000 3556600 1986000 2949700 321150 4540400 1817300 2487200 2237500 3339500 3848400 2865800 3440500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2131700 3155500 158780 4583300 1877600 2278200 2169100 3350600 3866600 2916000 3556600 1986000 2949700 321150 4540400 1817300 2487200 2237500 3339500 3848400 2865800 3440500 1 1 1 1 1 1 1 1 1 1 1 66794000 0 66794000 11685 999 10846 62269 75552 75552 1 LIADVAPSAIR Unmodified 1124.6554 0.65535823 978 P39748 FEN1 Flap endonuclease 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 55.777 55.985 2 9.2673E-16 15889 20211116_3434_TMUAki_TMT10x_P_F6 205.83 123.37 25140000 44429000 140940 44033000 31695000 40787000 28003000 35674000 35569000 35278000 36761000 23408000 41456000 2109600 44900000 30294000 41636000 28832000 36517000 35897000 34471000 35425000 5 5 3 5 5 5 5 5 5 5 5 9360500 16031000 77794 16069000 16592000 23733000 12959000 13994000 12816000 13141000 13896000 8716200 14959000 949830 16505000 15822000 23486000 13330000 14694000 13082000 12870000 13371000 2 2 2 2 2 2 2 2 2 2 2 15780000 28398000 63143 27964000 15104000 17054000 15045000 21680000 22754000 22137000 22865000 14692000 26496000 1159800 28395000 14472000 18150000 15502000 21823000 22815000 21601000 22054000 3 3 1 3 3 3 3 3 3 3 3 3415900000 1587800000 1828200000 11686 978 10847 62270;62271;62272;62273;62274 75553;75554;75555;75556;75557 75554 5 LIADVAPSAIRENDIK Unmodified 1723.9468 0.9468488 978 P39748 FEN1 Flap endonuclease 1 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 57.17 57.26 3 4.0425E-21 17343 20211116_3431_TMUAki_TMT10x_P_F4 165.24 138.7 57275000 92191000 605630 103090000 83173000 98191000 61689000 89361000 88688000 75322000 82525000 53333000 86065000 5609700 104330000 79242000 100130000 64533000 90882000 88825000 74142000 79799000 9 9 7 9 9 9 9 9 9 9 9 32144000 50655000 386590 55522000 56677000 76799000 43114000 48531000 48741000 42330000 45312000 29932000 47285000 3302900 56616000 54023000 76290000 44616000 50584000 49217000 41597000 43817000 5 5 3 5 5 5 5 5 5 5 5 25131000 41536000 219030 47571000 26495000 21392000 18575000 40830000 39947000 32993000 37212000 23401000 38780000 2306800 47713000 25219000 23844000 19918000 40297000 39607000 32545000 35982000 4 4 4 4 4 4 4 4 4 4 4 8160700000 4265300000 3895300000 11687 978 10848 62275;62276;62277;62278;62279;62280 75558;75559;75560;75561;75562;75563;75564;75565;75566 75558 9 LIAGCIGKPLGEQFRK Unmodified 1785.9924 0.99235921 2852 Q9HAV4 XPO5 Exportin-5 yes yes 0 0 0 2 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 53.764 53.904 4 6.9764E-15 15917 20211116_3431_TMUAki_TMT10x_P_F4 148.7 119.75 26561000 44638000 243420 46821000 42437000 56099000 22554000 38694000 28358000 33679000 35308000 24732000 41660000 2571200 47750000 40200000 56187000 24096000 40070000 28842000 33099000 33846000 3 3 2 3 3 3 3 3 3 3 3 16027000 25910000 243420 27261000 31271000 45258000 13672000 22589000 16637000 19345000 20347000 14924000 24182000 1769100 27985000 29557000 44486000 14880000 24014000 16927000 19027000 19513000 2 2 2 2 2 2 2 2 2 2 2 10534000 18728000 0 19560000 11165000 10841000 8881200 16105000 11721000 14334000 14961000 9807600 17478000 802120 19765000 10643000 11700000 9215900 16056000 11915000 14072000 14332000 1 1 0 1 1 1 1 1 1 1 1 3844300000 2561700000 1282600000 11688 2852 10849 62281;62282;62283;62284 75567;75568;75569 75567 3 LIAHAGSLLNLAK Unmodified 1319.7925 0.79252041 3254 Q9Y2X3 NOP58 Nucleolar protein 58 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 62.563 62.549 3 7.1826E-13 20005 20211116_3442_TMUAki_TMT10x_S_F4 136.53 107.06 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11689 3254 10850 62285;62286 75570;75571 75571 2 LIAHAGSLTNLAK Unmodified 1307.7561 0.75613491 103 O00567 NOP56 Nucleolar protein 56 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 50.102 49.791 3 2.3415E-18 15491 20211116_3429_TMUAki_TMT10x_P_F2 146.36 122.63 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11690 103 10851 62287;62288 75572;75573 75572 2 LIALLEVLSQK Unmodified 1225.7646 0.76457433 755;1703;328 P21333;P21333-2;Q14315;Q14315-2;O75369;O75369-8;O75369-6;O75369-3;O75369-2;O75369-9;O75369-5;O75369-4 FLNA;FLNC;FLNB Filamin-A;Filamin-C;Filamin-B no no 0 0 0 0 By MS/MS By MS/MS 4.75 0.433 1 3 1 3 83.164 83.167 2;3 1.3867E-07 28332 20211116_3442_TMUAki_TMT10x_S_F4 112.36 98.778 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11691 755;1703;328 10852 62289;62290;62291;62292 75574;75575;75576;75577 75575 4 LIALLEVLSQKK Unmodified 1353.8595 0.85953735 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 80.626 80.637 3 1.1649E-16 28495 20211116_3446_TMUAki_TMT10x_S_F7 205.02 181.8 44110000 71332000 1259100 58953000 32755000 59301000 46438000 40149000 41372000 47121000 45699000 41079000 66514000 4617600 61021000 31823000 59960000 46231000 41996000 42464000 45733000 43950000 6 6 4 6 6 6 6 6 6 6 6 6131700 9209300 60410 7767400 5915400 11115000 6281800 5449100 6327100 6531100 6109500 5709500 8587900 535850 8075900 5683200 10990000 6354200 5858600 6427000 6334000 5900400 2 2 1 2 2 2 2 2 2 2 2 37978000 62123000 1198700 51185000 26839000 48185000 40156000 34700000 35045000 40590000 39589000 35370000 57926000 4081800 52945000 26140000 48970000 39877000 36137000 36037000 39399000 38050000 4 4 3 4 4 4 4 4 4 4 4 5856800000 3497100000 2359700000 11692 755 10853 62293;62294;62295;62296 75578;75579;75580;75581;75582;75583 75582 6 LIALLEVLSQKR Unmodified 1381.8657 0.86568536 1703;328 Q14315;Q14315-2;O75369;O75369-8;O75369-6;O75369-3;O75369-2;O75369-9;O75369-5;O75369-4 FLNC;FLNB Filamin-C;Filamin-B no no 0 0 0 1 By MS/MS 7 0 1 1 80.405 80.445 3 2.5387E-06 28424 20211116_3446_TMUAki_TMT10x_S_F7 105.17 78.072 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11693 1703;328 10854 62297 75584 75584 1 LIALSIDSVEDHLAWSK Unmodified 1895.9993 0.9992783 859 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 78.981 79.006 3 1.3296E-29 27843 20211116_3446_TMUAki_TMT10x_S_F7 190.82 171.5 11314000 18021000 186930 16759000 12065000 15563000 14161000 7987200 7431600 9100100 12748000 10535000 16811000 1087900 17168000 11630000 15758000 14046000 8536500 8043500 8841800 12133000 3 3 2 3 3 3 3 3 3 3 3 6263000 9708500 186930 9408700 6051300 10663000 7260800 4935200 4866900 5751600 7268300 5832900 9057900 690490 9638400 5844000 10657000 7227600 5331300 5141200 5583700 6937200 2 2 2 2 2 2 2 2 2 2 2 5050700 8312600 0 7350400 6013700 4900400 6899800 3051900 2564700 3348500 5479300 4702400 7752900 397390 7529900 5786300 5101800 6818200 3205200 2902300 3258100 5195400 1 1 0 1 1 1 1 1 1 1 1 2192800000 1092100000 1100700000 11694 859 10855 62298;62299;62300 75585;75586;75587 75587 3 LIANNTTVER Unmodified 1129.6091 0.60913632 459 O96019;O96019-2 ACTL6A Actin-like protein 6A yes no 0 0 0 0 By matching By MS/MS 4.67 0.471 1 2 2 1 35.649 35.703 2 2.1912E-08 7712 20211116_3444_TMUAki_TMT10x_S_F5 168.9 102.36 395920 662500 0 649110 433580 326980 479390 307090 348780 293000 497920 368580 618140 26323 658320 416430 352530 479830 312810 365830 286740 475710 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 395920 662500 0 649110 433580 326980 479390 307090 348780 293000 497920 368580 618140 26323 658320 416430 352530 479830 312810 365830 286740 475710 1 1 0 1 1 1 1 1 1 1 1 136690000 114150000 22533000 11695 459 10856 62301;62302;62303 75588 75588 1 LIAPVAEEEATVPNNK Unmodified 1693.8887 0.88866522 531 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 0 By MS/MS By MS/MS 3.46 1.45 3 5 6 6 6 2 15 13 57.529 57.453 2;3;4 1.2415E-93 16513 20211116_3444_TMUAki_TMT10x_S_F5 351.94 323.92 237280000 398840000 2397200 452930000 354830000 408370000 253410000 301280000 305890000 274980000 324670000 220940000 372360000 21572000 457150000 337690000 416360000 263260000 310370000 309560000 269640000 312620000 36 36 21 35 36 36 35 35 36 35 36 121880000 198910000 1553100 225760000 254620000 318900000 174960000 160050000 165860000 144090000 166050000 113480000 185710000 12126000 229390000 242150000 315560000 180650000 169700000 169140000 141380000 160180000 19 19 11 18 19 19 18 18 19 18 19 115400000 199930000 844100 227170000 100210000 89465000 78444000 141230000 140030000 130890000 158620000 107450000 186650000 9446400 227770000 95544000 100800000 82613000 140670000 140420000 128260000 152440000 17 17 10 17 17 17 17 17 17 17 17 79766000000 49795000000 29971000000 11696 531 10857 62304;62305;62306;62307;62308;62309;62310;62311;62312;62313;62314;62315;62316;62317;62318;62319;62320;62321;62322;62323;62324;62325;62326;62327;62328;62329;62330;62331 75589;75590;75591;75592;75593;75594;75595;75596;75597;75598;75599;75600;75601;75602;75603;75604;75605;75606;75607;75608;75609;75610;75611;75612;75613;75614;75615;75616;75617;75618;75619;75620;75621;75622;75623;75624;75625 75623 37 LIASVAGSVER Unmodified 1100.619 0.61897272 1667 Q13868;Q13868-3;Q13868-2 EXOSC2 Exosome complex component RRP4 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 52.402 52.515 2 1.0091E-06 14827 20211116_3445_TMUAki_TMT10x_S_F6 135.63 91.257 10926000 15345000 101800 17681000 15584000 16651000 11289000 14244000 14489000 12746000 13945000 10174000 14327000 1062800 17857000 14841000 16972000 11774000 14559000 14581000 12510000 13469000 2 2 1 2 2 2 2 2 2 2 2 5575600 7280200 0 8814500 10479000 11665000 6344800 7019800 6668300 6108900 6953900 5191400 6798900 527790 8926500 9943500 11603000 6662000 7344400 6779800 6003800 6699300 1 1 0 1 1 1 1 1 1 1 1 5350300 8064600 101800 8866300 5105400 4986600 4944100 7223800 7820600 6637100 6991100 4982400 7528100 535020 8930400 4897400 5369600 5112500 7214200 7800800 6506400 6769700 1 1 1 1 1 1 1 1 1 1 1 407290000 162340000 244950000 11697 1667 10858 62332;62333 75626;75627 75627 2 LIASYCNVGDIEGASK Unmodified 1695.8138 0.81378572 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 62.497 62.496 3 1.2977E-10 18948 20211116_3445_TMUAki_TMT10x_S_F6 125.5 102.97 17132000 28413000 369150 28437000 19420000 23980000 18566000 17835000 15857000 15601000 20949000 15954000 26512000 1796400 28942000 18622000 24566000 18793000 18377000 16431000 15329000 20051000 3 3 3 3 3 3 3 3 3 3 3 11348000 19082000 322720 18719000 14100000 19211000 14103000 12017000 10140000 10056000 14414000 10569000 17804000 1280200 19129000 13539000 19379000 14182000 12522000 10641000 9901900 13772000 2 2 2 2 2 2 2 2 2 2 2 5783100 9330900 46436 9718300 5320700 4769300 4462800 5818400 5716900 5545400 6535100 5385000 8708200 516260 9812900 5083000 5187500 4610500 5854600 5790100 5427100 6278800 1 1 1 1 1 1 1 1 1 1 1 1378700000 516140000 862510000 11698 1018 10859 62334;62335;62336 75628;75629;75630;75631 75631 4 LICCDILDVLDK Unmodified 1475.7364 0.73638702 1342 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 0 0 By MS/MS By MS/MS 5.54 1.7 4 4 10 17 36 25 36 16 83 65 62.014 62.035 2;3 2.2086E-19 26499 20211116_3436_TMUAki_TMT10x_P_F8 226.71 162.89 1464500000 2355000000 6688300 2248000000 1678400000 1948600000 1529000000 1053800000 807010000 1190000000 1626600000 1363500000 2197100000 106110000 2296400000 1604700000 1983500000 1536200000 1120600000 881670000 1156600000 1543700000 138 138 74 138 137 138 137 138 138 138 138 675830000 1056300000 2539200 1006400000 585180000 1134000000 654950000 490290000 364060000 560790000 716880000 629220000 985410000 44226000 1032100000 562490000 1132900000 651570000 533090000 395620000 544800000 680630000 77 77 43 77 76 77 76 77 77 77 77 788660000 1298800000 4149000 1241600000 1093300000 814560000 874010000 563470000 442950000 629210000 909690000 734260000 1211700000 61884000 1264300000 1042300000 850520000 884670000 587540000 486050000 611810000 863100000 61 61 31 61 61 61 61 61 61 61 61 306500000000 151540000000 154960000000 11699 1342 10860 62337;62338;62339;62340;62341;62342;62343;62344;62345;62346;62347;62348;62349;62350;62351;62352;62353;62354;62355;62356;62357;62358;62359;62360;62361;62362;62363;62364;62365;62366;62367;62368;62369;62370;62371;62372;62373;62374;62375;62376;62377;62378;62379;62380;62381;62382;62383;62384;62385;62386;62387;62388;62389;62390;62391;62392;62393;62394;62395;62396;62397;62398;62399;62400;62401;62402;62403;62404;62405;62406;62407;62408;62409;62410;62411;62412;62413;62414;62415;62416;62417;62418;62419;62420;62421;62422;62423;62424;62425;62426;62427;62428;62429;62430;62431;62432;62433;62434;62435;62436;62437;62438;62439;62440;62441;62442;62443;62444;62445;62446;62447;62448;62449;62450;62451;62452;62453;62454;62455;62456;62457;62458;62459;62460;62461;62462;62463;62464;62465;62466;62467;62468;62469;62470;62471;62472;62473;62474;62475;62476;62477;62478;62479;62480;62481;62482;62483;62484 75632;75633;75634;75635;75636;75637;75638;75639;75640;75641;75642;75643;75644;75645;75646;75647;75648;75649;75650;75651;75652;75653;75654;75655;75656;75657;75658;75659;75660;75661;75662;75663;75664;75665;75666;75667;75668;75669;75670;75671;75672;75673;75674;75675;75676;75677;75678;75679;75680;75681;75682;75683;75684;75685;75686;75687;75688;75689;75690;75691;75692;75693;75694;75695;75696;75697;75698;75699;75700;75701;75702;75703;75704;75705;75706;75707;75708;75709;75710;75711;75712;75713;75714;75715;75716;75717;75718;75719;75720;75721;75722;75723;75724;75725;75726;75727;75728;75729;75730;75731;75732;75733;75734;75735;75736;75737;75738;75739;75740;75741;75742;75743;75744;75745;75746;75747;75748;75749;75750;75751;75752;75753;75754;75755;75756;75757;75758;75759;75760;75761;75762;75763;75764;75765;75766;75767;75768;75769;75770;75771;75772;75773;75774;75775;75776;75777;75778;75779;75780;75781;75782;75783;75784;75785;75786;75787;75788;75789;75790;75791;75792;75793;75794;75795;75796;75797;75798;75799;75800;75801;75802;75803;75804;75805;75806;75807;75808;75809;75810;75811;75812;75813;75814;75815 75724 184 LICCDILDVLDKHLIPAANTGESK Unmodified 2694.3721 0.37207244 1342 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 0 1 By MS/MS By MS/MS 7.25 0.829 1 1 2 1 3 78.585 78.587 4 1.3984E-16 27699 20211116_3446_TMUAki_TMT10x_S_F7 129.34 116.41 6762700 12425000 116140 9467000 17390000 19526000 10444000 28397000 17170000 21034000 15941000 6297400 11583000 787140 10017000 16505000 19470000 11165000 28204000 17129000 20846000 15416000 3 3 2 3 3 3 3 3 3 3 3 2196600 3615200 100250 2997600 2634600 8847200 4298300 9016200 5001400 6850600 5151200 2046000 3371100 281680 3189200 2574100 8656000 4294700 9093700 5062600 6779900 4964500 1 1 1 1 1 1 1 1 1 1 1 4566100 8809500 15881 6469400 14756000 10678000 6145800 19381000 12168000 14183000 10790000 4251400 8211500 505460 6828000 13931000 10814000 6870600 19111000 12067000 14066000 10451000 2 2 1 2 2 2 2 2 2 2 2 4315300000 1372200000 2943200000 11700 1342 10861 62485;62486;62487;62488 75816;75817;75818 75818 3 LIDDMVAQVLK Unmodified 1243.6846 0.68460945 1083 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 80.246 80.25 2 3.3595E-11 27002 20211116_3433_TMUAki_TMT10x_P_F5 130.98 92.896 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11701 1083 10862 62489;62490;62491 75819;75820;75821 75819 3 LIDFLECGK Unmodified 1093.5478 0.54778161 710 P17844;P17844-2 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 4 2 77.575 77.594 2;3 4.7167E-05 27253 20211116_3446_TMUAki_TMT10x_S_F7 149.94 86.457 97470000 164470000 434450 168670000 115110000 146160000 109170000 97232000 90315000 96522000 120520000 90754000 153490000 8326500 171430000 110220000 149190000 110470000 101310000 93777000 94297000 115320000 4 4 2 4 4 4 4 4 4 4 4 54534000 88557000 213660 90138000 65369000 103550000 65707000 53955000 48922000 51921000 64871000 50775000 82639000 4475600 92044000 62675000 103550000 66112000 57300000 51071000 50792000 62085000 2 2 1 2 2 2 2 2 2 2 2 42936000 75917000 220790 78529000 49742000 42613000 43467000 43277000 41392000 44601000 55645000 39979000 70849000 3851000 79391000 47550000 45642000 44354000 44007000 42706000 43505000 53237000 2 2 1 2 2 2 2 2 2 2 2 9459400000 4448700000 5010700000 11702 710 10863 62492;62493;62494;62495;62496;62497 75822;75823;75824;75825;75826;75827 75827 6 LIDFLESGK Unmodified 1020.5492 0.54916182 2368 Q92841;Q92841-3;Q92841-1;Q92841-2 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 0 0 By MS/MS By MS/MS 5.71 1.03 1 2 2 2 4 3 77.611 77.629 2 5.2783E-06 25989 20211116_3433_TMUAki_TMT10x_P_F5 183.65 135.09 78502000 124200000 52139 136520000 103070000 119360000 85181000 101960000 99286000 101480000 107980000 73090000 115940000 6475500 138150000 98357000 122260000 87775000 104530000 100700000 99128000 103900000 7 7 1 7 7 7 7 7 7 7 7 38676000 59135000 52139 63790000 60024000 82563000 48778000 48379000 46538000 47348000 49676000 36010000 55197000 3344400 65028000 57261000 82184000 49996000 50883000 47554000 46285000 47824000 4 4 1 4 4 4 4 4 4 4 4 39826000 65069000 0 72732000 43049000 36794000 36403000 53578000 52749000 54130000 58308000 37081000 60745000 3131200 73120000 41097000 40078000 37779000 53644000 53145000 52843000 56076000 3 3 0 3 3 3 3 3 3 3 3 7982100000 4666500000 3315500000 11703 2368 10864 62498;62499;62500;62501;62502;62503;62504 75828;75829;75830;75831;75832;75833;75834 75829 7 LIDIFYPGDQQSVTFGTK Unmodified 2028.0204 0.020407676 1229 P54886;P54886-2 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes no 0 0 0 0 By MS/MS By MS/MS 7.43 0.623 1 6 7 8 6 79.917 79.93 2;3 5.3904E-63 25765 20211116_3447_TMUAki_TMT10x_S_F8 262.64 238.34 31788000 51263000 79679 48305000 35658000 39854000 39730000 26927000 27616000 30543000 37535000 29597000 47823000 2571900 49361000 34286000 40832000 39712000 28138000 28977000 29681000 35902000 9 9 3 9 9 9 9 9 9 9 9 10497000 16911000 14744 16071000 8821300 16574000 11406000 8691000 9037000 10009000 11937000 9772700 15776000 772720 16462000 8518400 16676000 11361000 9273700 9400100 9721400 11425000 4 4 1 4 4 4 4 4 4 4 4 21292000 34352000 64935 32233000 26837000 23281000 28324000 18236000 18579000 20534000 25598000 19824000 32046000 1799100 32899000 25767000 24156000 28351000 18865000 19577000 19960000 24476000 5 5 2 5 5 5 5 5 5 5 5 9525800000 4720000000 4805800000 11704 1229 10865 62505;62506;62507;62508;62509;62510;62511;62512;62513;62514;62515;62516;62517;62518 75835;75836;75837;75838;75839;75840;75841;75842;75843;75844;75845;75846;75847;75848 75847 14 LIDLHSPSEIVK Unmodified 1349.7555 0.7554662 1278 P60866;P60866-2 RPS20 40S ribosomal protein S20 yes no 0 0 0 0 By MS/MS By MS/MS 5.73 1.21 2 3 3 2 1 6 5 56.831 57.055 2;3 6.8509E-18 16734 20211116_3445_TMUAki_TMT10x_S_F6 188.28 130.68 116710000 194710000 1343400 211600000 178680000 206030000 129540000 169950000 166170000 152940000 169590000 108680000 181750000 11606000 214590000 170160000 209420000 135100000 174110000 167560000 150070000 163500000 16 16 12 16 16 16 16 16 16 16 16 61006000 100870000 899820 110990000 129910000 158490000 87093000 88991000 87175000 77988000 89261000 56809000 94161000 6778900 113220000 123540000 156970000 90583000 93658000 88756000 76620000 86042000 9 9 7 9 9 9 9 9 9 9 9 55702000 93844000 443560 100610000 48764000 47539000 42444000 80964000 78990000 74955000 80334000 51866000 87592000 4827300 101370000 46619000 52454000 44514000 80452000 78807000 73453000 77454000 7 7 5 7 7 7 7 7 7 7 7 17663000000 9547600000 8115700000 11705 1278 10866 62519;62520;62521;62522;62523;62524;62525;62526;62527;62528;62529 75849;75850;75851;75852;75853;75854;75855;75856;75857;75858;75859;75860;75861;75862;75863;75864;75865;75866 75865 18 LIDLHTNVATAVLEHIK Unmodified 1886.0625 0.062547262 2309 Q8WVM8;Q8WVM8-2;Q8WVM8-3 SCFD1 Sec1 family domain-containing protein 1 yes no 0 0 0 0 By MS/MS 1 0 1 1 74.756 74.664 4 3.8939E-08 26080 20211116_3439_TMUAki_TMT10x_S_F1 117.4 96.737 1793200 2956600 22168 2905500 2197700 2181600 2251000 2207700 2038400 2199100 2323800 1669800 2758600 174990 2956900 2109900 2267700 2273900 2243100 2093200 2148100 2232800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1793200 2956600 22168 2905500 2197700 2181600 2251000 2207700 2038400 2199100 2323800 1669800 2758600 174990 2956900 2109900 2267700 2273900 2243100 2093200 2148100 2232800 1 1 1 1 1 1 1 1 1 1 1 232300000 0 232300000 11706 2309 10867 62530 75867 75867 1 LIDVNHYAKDEVAAR Unmodified 1712.8846 0.8845829 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 45.682 45.802 4 9.3691E-07 12114 20211116_3445_TMUAki_TMT10x_S_F6 114.69 95.297 1634800 2787200 36267 3181800 2876900 3159200 1846700 2574000 2534200 2389600 2659000 1522400 2602200 186730 3217800 2734800 3206600 1948300 2641100 2552500 2341400 2561100 2 2 2 2 2 2 2 2 2 2 2 744280 1326300 24114 1434200 2068400 2422400 1187500 1194600 1190200 1189700 1194100 693180 1238000 102720 1470300 1962600 2379200 1250700 1276400 1210800 1162100 1151800 1 1 1 1 1 1 1 1 1 1 1 890510 1460800 12153 1747700 808530 736810 659100 1379400 1344100 1199900 1464800 829250 1364200 84008 1747500 772240 827410 697570 1364600 1341700 1179300 1409300 1 1 1 1 1 1 1 1 1 1 1 256820000 127260000 129550000 11707 1663 10868 62531;62532 75868;75869 75869 2 LIEAEDNMNCQMSNITVTYR 2 Oxidation (M) 2433.061 0.061044991 1355 P62318;P62318-2 SNRPD3 Small nuclear ribonucleoprotein Sm D3 yes no 0 0 2 0 By MS/MS By MS/MS 2.92 1.21 2 3 3 4 1 7 6 53.094 53.014 2;3 1.1609E-18 15268 20211116_3428_TMUAki_TMT10x_P_F1 155.92 148.11 12603000 21181000 80313 19406000 16292000 25910000 15971000 19337000 21673000 19528000 18621000 11735000 19757000 903830 20020000 15610000 25847000 16393000 19998000 21691000 19065000 18057000 15 15 6 15 15 15 15 15 15 15 15 7865000 13309000 52809 12266000 10730000 20522000 11512000 12648000 13284000 12580000 11998000 7322600 12415000 637410 12711000 10305000 20221000 11691000 13255000 13391000 12289000 11614000 10 10 4 10 10 10 10 10 10 10 10 4738500 7872000 27504 7139400 5561500 5388000 4459000 6689300 8389100 6948400 6622500 4412100 7342700 266410 7308900 5305400 5626200 4702200 6743300 8299800 6775500 6443100 5 5 2 5 5 5 5 5 5 5 5 7370500000 4764700000 2605800000 11708 1355 10869 62533;62534;62535;62536;62537;62538;62539;62540;62541;62542;62543;62544;62545 75870;75871;75872;75873;75874;75875;75876;75877;75878;75879;75880;75881;75882;75883;75884 75870 1813;1814 15 LIEAEDNMNCQMSNITVTYR Oxidation (M) 2417.0661 0.066130369 1355 P62318;P62318-2 SNRPD3 Small nuclear ribonucleoprotein Sm D3 yes no 0 0 1 0 By MS/MS By MS/MS 3.62 0.484 3 5 3 5 59.371 59.224 3 2.0867E-24 19089 20211116_3442_TMUAki_TMT10x_S_F4 162.37 154.48 8140400 13522000 107790 14061000 10276000 12975000 10060000 9704700 8706700 9306600 10868000 7579800 12620000 749110 14290000 9850400 13211000 10174000 10020000 8993500 9105700 10417000 7 7 5 7 7 7 7 7 7 7 7 3755800 5903900 57650 6080100 5027300 8414500 5169100 4901600 4411400 4483700 4920700 3497500 5509600 382920 6225100 4827500 8349200 5212400 5148400 4539000 4396300 4731100 3 3 3 3 3 3 3 3 3 3 3 4384500 7618200 50136 7980400 5248600 4560300 4891000 4803100 4295300 4822900 5947500 4082400 7110000 366190 8064600 5023000 4862200 4961400 4871800 4454500 4709400 5686200 4 4 2 4 4 4 4 4 4 4 4 3571500000 1580500000 1991000000 11709 1355 10869 62546;62547;62548;62549;62550;62551;62552;62553 75885;75886;75887;75888;75889;75890;75891;75892 75891 1813;1814 8 LIEDFLAR Unmodified 975.53893 0.53893149 226 O43617;O43617-2 TRAPPC3 Trafficking protein particle complex subunit 3 yes no 0 0 0 0 By MS/MS By MS/MS 3.38 1.32 1 1 2 2 2 5 3 74.441 74.38 2 0.0007916 24817 20211116_3442_TMUAki_TMT10x_S_F4 133.9 101.68 13447000 21327000 45146 21207000 15365000 24134000 15654000 15046000 14778000 14753000 17211000 12520000 19900000 1104700 21687000 14738000 24201000 15836000 15747000 15159000 14421000 16528000 4 4 2 4 4 4 4 4 4 4 4 10197000 15904000 45146 16029000 11291000 20150000 11839000 11441000 11175000 11295000 12794000 9494500 14840000 871220 16405000 10841000 20077000 11960000 12067000 11455000 11037000 12292000 3 3 2 3 3 3 3 3 3 3 3 3249700 5423300 0 5177800 4073500 3984000 3814900 3605300 3603100 3458200 4416500 3025400 5059600 233430 5281700 3896300 4123800 3876600 3680400 3703600 3383500 4235300 1 1 0 1 1 1 1 1 1 1 1 1337900000 842420000 495450000 11710 226 10870 62554;62555;62556;62557;62558;62559;62560;62561 75893;75894;75895;75896;75897;75898 75897 6 LIEDGRGCEVIQEIK Unmodified 1757.8982 0.89818405 602 P10155;P10155-5;P10155-3;P10155-4;P10155-2 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes no 0 0 0 1 By MS/MS 3.5 0.5 1 1 2 56.176 56.327 3 1.4386E-20 16966 20211116_3431_TMUAki_TMT10x_P_F4 179.14 134.33 3868600 6359800 0 6710900 7139000 10084000 5478900 6416300 5918400 5481900 5452200 3601500 5935700 298530 6871900 6799100 9982000 5657900 6680700 5985200 5392400 5274000 1 1 0 1 1 1 1 1 1 1 1 3868600 6359800 0 6710900 7139000 10084000 5478900 6416300 5918400 5481900 5452200 3601500 5935700 298530 6871900 6799100 9982000 5657900 6680700 5985200 5392400 5274000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 606670000 606670000 0 11711 602 10871 62562;62563 75899;75900 75900 2 LIEDKPR Unmodified 869.49707 0.49706667 1613 Q13247;Q13247-3 SRSF6 Serine/arginine-rich splicing factor 6 yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 33.681 33.782 3 0.0039873 6821 20211116_3444_TMUAki_TMT10x_S_F5 101.28 38.626 4253700 7007100 1001.9 5845000 5652700 6625000 4816200 3589300 4332800 3814100 5068900 3960400 6534000 347970 6056600 5397500 6632800 4914000 3809300 4455100 3715800 4866900 2 2 1 2 2 2 2 2 2 2 2 3498900 5741500 0 4751600 4826900 5989000 3879800 2950700 3521100 3167800 4254700 3257600 5353800 283470 4935800 4602800 5956600 3973900 3159900 3623800 3084900 4081700 1 1 0 1 1 1 1 1 1 1 1 754770 1265600 1001.9 1093400 825870 636030 936380 638630 811660 646390 814120 702770 1180300 64505 1120800 794720 676220 940180 649410 831270 630970 785270 1 1 1 1 1 1 1 1 1 1 1 269340000 223630000 45705000 11712 1613 10872 62564;62565;62566 75901;75902;75903 75903 3 LIEEETAR Unmodified 959.49238 0.49237523 2985 Q9NWB6;Q9NWB6-3;Q9NWB6-2 ARGLU1 Arginine and glutamate-rich protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 35.653 35.61 2 0.00043058 8056 20211116_3440_TMUAki_TMT10x_S_F2 147.06 108.22 2484800 4058700 6798.9 3773600 4441500 4364900 3051300 3052300 3192100 2611400 3530800 2313600 3786100 233980 3878700 4223800 4380700 3172100 3156400 3253200 2568600 3395600 4 4 2 4 4 4 4 4 4 4 4 1536500 2455500 4559.2 2201800 3441300 3545800 1884100 1957600 1992200 1668000 2212700 1430700 2290300 154760 2284200 3260600 3493700 1995900 2061900 2029800 1641000 2127700 2 2 1 2 2 2 2 2 2 2 2 948270 1603200 2239.7 1571800 1000300 819110 1167200 1094600 1199900 943360 1318200 882930 1495800 79221 1594500 963290 887080 1176200 1094500 1223500 927560 1267900 2 2 1 2 2 2 2 2 2 2 2 112460000 51016000 61441000 11713 2985 10873 62567;62568;62569;62570 75904;75905;75906;75907 75907 4 LIEESSVDEVVVTNTVPHEVQK Unmodified 2450.254 0.25404902 1714 Q14558;Q14558-2 PRPSAP1 Phosphoribosyl pyrophosphate synthase-associated protein 1 yes no 0 0 0 0 By MS/MS 2 0 1 1 64.104 63.867 3 0.016651 19978 20211116_3440_TMUAki_TMT10x_S_F2 46.005 27.849 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11714 1714 10874 62571 75908 75908 1 LIEEVMIGEDK Oxidation (M) 1290.6377 0.63771883 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 1 0 By MS/MS By MS/MS 2.31 1.07 4 3 4 2 6 7 62.063 61.844 2;3 1.1788E-05 20380 20211116_3429_TMUAki_TMT10x_P_F2 118.6 82.084 72281000 110890000 399430 119010000 84901000 104120000 72490000 68793000 67137000 72000000 83209000 67300000 103500000 6141200 120620000 81094000 106190000 74013000 71823000 69105000 70187000 79771000 16 16 9 16 16 16 16 16 16 16 16 44900000 66854000 26405 71804000 58067000 79781000 45792000 41141000 41358000 43990000 50343000 41804000 62401000 3617000 73021000 55350000 79916000 46953000 43865000 42587000 42846000 48286000 9 9 3 9 9 9 9 9 9 9 9 27380000 44038000 373020 47211000 26834000 24338000 26698000 27651000 25779000 28010000 32867000 25496000 41104000 2524200 47597000 25744000 26279000 27060000 27957000 26517000 27341000 31486000 7 7 6 7 7 7 7 7 7 7 7 5524000000 3393500000 2130500000 11715 1429 10875 62572;62573;62574;62575;62576;62577;62578;62579;62580;62581;62582;62583;62584 75909;75910;75911;75912;75913;75914;75915;75916;75917;75918;75919;75920;75921;75922;75923;75924;75925;75926;75927 75915 1928 19 LIEEVMIGEDK Unmodified 1274.6428 0.64280421 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.764 4 1 1 3 3 73.092 73.037 2;3 2.0484E-17 25033 20211116_3429_TMUAki_TMT10x_P_F2 192.1 131.58 55117000 83834000 263840 107020000 57464000 37331000 52611000 17818000 14631000 22462000 51287000 51319000 78313000 4524000 106500000 54972000 41891000 52444000 19240000 17847000 21746000 48340000 6 6 2 6 6 6 6 6 6 6 6 14807000 20996000 0 26098000 16097000 15139000 15004000 4607600 4158500 6020100 12527000 13786000 19611000 1137200 26100000 15400000 15862000 14941000 5258400 5002100 5821400 11825000 2 2 0 2 2 2 2 2 2 2 2 40310000 62838000 263840 80923000 41367000 22193000 37607000 13211000 10472000 16441000 38760000 37533000 58702000 3386800 80399000 39572000 26029000 37503000 13982000 12845000 15924000 36515000 4 4 2 4 4 4 4 4 4 4 4 3835300000 2328300000 1507000000 11716 1429 10875 62585;62586;62587;62588;62589;62590 75928;75929;75930;75931;75932;75933;75934;75935 75930 8 LIEGGAHIYVCGDAR Unmodified 1629.7933 0.79332505 696 P16435 POR NADPH--cytochrome P450 reductase yes yes 0 0 0 0 By matching By MS/MS 4.5 0.5 2 2 1 3 44.957 45.091 3 0.0010759 11555 20211116_3444_TMUAki_TMT10x_S_F5 63.31 48.337 3790600 6624600 75770 7586700 3375100 2938600 2843100 4043500 3867300 3849400 5508800 3530000 6185000 379060 7602200 3227400 3305200 2943400 4049600 3947700 3767500 5263300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3790600 6624600 75770 7586700 3375100 2938600 2843100 4043500 3867300 3849400 5508800 3530000 6185000 379060 7602200 3227400 3305200 2943400 4049600 3947700 3767500 5263300 2 2 2 2 2 2 2 2 2 2 2 499570000 239080000 260490000 11717 696 10876 62591;62592;62593;62594 75936;75937;75938;75939 75939 4 LIEGLSHEVIVSAACGR Unmodified 1809.9407 0.94071757 3056 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.93 1.06 1 5 4 4 1 7 8 64.143 64.338 2;3 1.8346E-80 19361 20211116_3434_TMUAki_TMT10x_P_F6 322.62 282.7 93790000 159440000 1034000 159900000 123410000 134730000 108220000 100490000 83311000 99438000 121360000 87332000 148780000 8755300 162710000 117980000 138040000 109800000 103870000 87195000 97159000 115890000 22 22 14 22 22 22 22 22 22 22 22 42178000 70201000 246020 67935000 56396000 85162000 55556000 46820000 39425000 46076000 51890000 39271000 65497000 3646200 69723000 54050000 84833000 55897000 49516000 41256000 45031000 49670000 11 11 6 11 11 11 11 11 11 11 11 51613000 89240000 788010 91961000 67011000 49568000 52666000 53669000 43886000 53362000 69466000 48061000 83280000 5109100 92989000 63932000 53204000 53900000 54351000 45938000 52129000 66220000 11 11 8 11 11 11 11 11 11 11 11 32190000000 15830000000 16360000000 11718 3056 10877 62595;62596;62597;62598;62599;62600;62601;62602;62603;62604;62605;62606;62607;62608;62609 75940;75941;75942;75943;75944;75945;75946;75947;75948;75949;75950;75951;75952;75953;75954;75955;75956;75957;75958;75959;75960;75961;75962;75963 75947 24 LIEIENFK Unmodified 1004.5542 0.5542472 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 67.991 67.987 2 0.0020018 21214 20211116_3445_TMUAki_TMT10x_S_F6 114.89 11.331 18132000 30261000 469440 33039000 24786000 29897000 20877000 25817000 26009000 24366000 27545000 16886000 28247000 2034000 33462000 23696000 30559000 21539000 26411000 26289000 23857000 26524000 4 4 4 4 4 4 4 4 4 4 4 8311300 13850000 287360 15837000 14450000 20104000 11157000 11586000 12103000 11469000 12983000 7740800 12931000 1042900 16080000 13790000 20026000 11519000 12206000 12303000 11206000 12497000 2 2 2 2 2 2 2 2 2 2 2 9820600 16410000 182080 17202000 10336000 9793000 9719400 14231000 13905000 12897000 14562000 9145300 15315000 991110 17382000 9906000 10533000 10021000 14205000 13986000 12651000 14027000 2 2 2 2 2 2 2 2 2 2 2 1752200000 1212400000 539860000 11719 1723 10878 62610;62611;62612 75964;75965;75966;75967 75966 4 LIEIHGK Unmodified 808.48069 0.48068833 1422 Q5JPE7;Q15155;P69849;Q5JPE7-2;Q5JPE7-3 NOMO2;NOMO1;NOMO3 Nodal modulator 2;Nodal modulator 1;Nodal modulator 3 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 39.338 39.428 3 0.018837 9479 20211116_3445_TMUAki_TMT10x_S_F6 68.787 42.185 1440400 2195900 0 2681700 2435800 2115900 1741000 1184400 1198700 1205600 1658200 1341000 2050800 119480 2693000 2317200 2169500 1785500 1251900 1259500 1176500 1585300 2 2 0 2 2 2 2 2 2 2 2 909410 1387400 0 1773900 1885700 1606300 1107400 751190 768490 740210 1058500 846660 1296100 77234 1779900 1787700 1627500 1153500 806590 806930 723380 1012100 1 1 0 1 1 1 1 1 1 1 1 530960 808470 0 907730 550130 509550 633600 433200 430170 465350 599670 494360 754760 42247 913070 529450 541940 632030 445260 452540 453160 573230 1 1 0 1 1 1 1 1 1 1 1 82400000 41661000 40739000 11720 1422 10879 62613;62614 75968;75969 75969 2 LIEKLDIK Unmodified 970.60628 0.60628277 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 1 By MS/MS 7.5 0.5 1 1 2 57.138 57.39 3 0.035881 16614 20211116_3447_TMUAki_TMT10x_S_F8 60.064 14.068 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11721 653 10880 62615;62616 75970;75971 75971 2 LIELQAGKK Unmodified 998.61243 0.61243078 666 P14314;P14314-2 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 1 By MS/MS By MS/MS 4.25 3.27 2 1 1 1 3 46.312 46.357 3 1.7202E-05 14587 20211116_3439_TMUAki_TMT10x_S_F1 105.86 35.91 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11722 666 10881 62617;62618;62619;62620 75972;75973;75974;75975 75973 4 LIEQEEYLNVQVK Unmodified 1603.8457 0.84573777 2946 Q9NTJ3;Q9NTJ3-2 SMC4 Structural maintenance of chromosomes protein 4 yes no 0 0 0 0 By MS/MS 3 0 1 1 66.426 66.136 3 0.036267 22675 20211116_3430_TMUAki_TMT10x_P_F3 46.797 27.138 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11723 2946 10882 62621 75976 75976 1 LIEQYALREEHIDK Unmodified 1755.9155 0.91554867 2956 Q9NUQ3;Q9NUQ3-2 TXLNG Gamma-taxilin yes no 0 0 0 1 By matching By MS/MS 4.33 0.471 2 1 1 2 50.472 50.623 4 0.0081882 15139 20211116_3442_TMUAki_TMT10x_S_F4 60.158 10.71 1630000 2869000 41436 3043300 1480700 1650900 1633200 1870400 1874400 1931200 2248000 1518000 2677700 171670 3071600 1426100 1772600 1656100 1892400 1909600 1883600 2157000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1630000 2869000 41436 3043300 1480700 1650900 1633200 1870400 1874400 1931200 2248000 1518000 2677700 171670 3071600 1426100 1772600 1656100 1892400 1909600 1883600 2157000 1 1 1 1 1 1 1 1 1 1 1 631430000 275400000 356040000 11724 2956 10883 62622;62623;62624 75977 75977 1 LIEQYELREEHIDK Unmodified 1813.921 0.92102798 981 P40222 TXLNA Alpha-taxilin yes yes 0 0 0 1 By MS/MS By MS/MS 4 1.22 1 1 2 3 1 48.21 48.263 4 0.00016078 14916 20211116_3429_TMUAki_TMT10x_P_F2 88.992 70.535 3792800 6027600 31344 7531600 6899600 6830600 4947800 5132700 5482900 4655500 5166200 3531700 5630000 387170 7566800 6568500 6963700 5137400 5290000 5543200 4566500 4993500 2 2 2 2 2 2 2 2 2 2 2 2477600 3642600 6433.9 4703400 5682100 5709200 3833200 3021000 3415200 2908600 3241300 2306900 3402900 256290 4738300 5402200 5693700 3971900 3203800 3486500 2845400 3132200 1 1 1 1 1 1 1 1 1 1 1 1315200 2385000 24910 2828300 1217500 1121500 1114600 2111700 2067700 1746900 1924900 1224700 2227100 130880 2828500 1166300 1270000 1165500 2086200 2056700 1721100 1861300 1 1 1 1 1 1 1 1 1 1 1 2088900000 1920600000 168230000 11725 981 10884 62625;62626;62627;62628 75978;75979 75978 2 LIETGERER Unmodified 1101.5778 0.57783619 2887 Q9NPA8;Q9NPA8-2 ENY2 Transcription and mRNA export factor ENY2 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 30.225 29.978 3 0.0043523 7528 20211116_3429_TMUAki_TMT10x_P_F2 73.067 35.591 573920 821210 0 802940 626810 744930 607390 580080 635690 560710 654800 534330 766210 43377 819550 600200 758760 618000 597530 646150 548410 631070 2 2 0 2 2 2 2 2 2 2 2 376560 480790 0 487420 446230 553780 351550 393930 434940 364950 423510 350600 448660 30280 497770 425360 556460 364130 407720 438420 357620 408900 1 1 0 1 1 1 1 1 1 1 1 197350 340420 0 315520 180580 191160 255840 186150 200760 195760 231280 183730 317550 13097 321780 174850 202300 253870 189810 207730 190790 222170 1 1 0 1 1 1 1 1 1 1 1 37190000 13305000 23885000 11726 2887 10885 62629;62630 75980;75981 75980 2 LIEVDDER Unmodified 987.48729 0.48728985 1365 P62753 RPS6 40S ribosomal protein S6 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 43.017 42.896 2 6.464E-09 12721 20211116_3429_TMUAki_TMT10x_P_F2 225.08 155.7 15132000 24291000 48166 24192000 23007000 25293000 17624000 18288000 17986000 16869000 20594000 14089000 22666000 1359700 24703000 21925000 25541000 18169000 18905000 18374000 16534000 19786000 7 7 4 7 7 7 7 7 7 7 7 9028200 14392000 43639 14276000 16746000 19327000 11447000 10773000 10600000 9909700 12027000 8406200 13429000 873030 14648000 15925000 19185000 11862000 11359000 10871000 9713900 11558000 4 4 3 4 4 4 4 4 4 4 4 6104000 9898700 4527.1 9915800 6261000 5965900 6176400 7515100 7385900 6959300 8567600 5683200 9236600 486700 10055000 5999800 6356100 6306900 7546000 7502900 6819700 8228200 3 3 1 3 3 3 3 3 3 3 3 1388900000 828200000 560700000 11727 1365 10886 62631;62632;62633;62634;62635;62636 75982;75983;75984;75985;75986;75987;75988 75983 7 LIEVDDERK Unmodified 1115.5823 0.58225287 1365 P62753 RPS6 40S ribosomal protein S6 yes yes 0 0 0 1 By MS/MS By MS/MS 2.71 1.03 1 2 2 2 3 4 39.717 39.656 3 1.778E-05 12937 20211116_3441_TMUAki_TMT10x_S_F3 153.97 104.55 12928000 18127000 115960 25142000 11435000 10345000 11286000 6127100 7320000 6766200 12042000 12038000 16940000 1113000 24933000 10965000 11357000 11333000 6461700 7788000 6581800 11471000 6 6 3 6 6 6 6 6 6 6 6 5285000 7306400 11979 9807100 6614300 6183200 4297100 2632400 3120700 3000100 4743700 4920900 6827000 460500 9774000 6284000 6442700 4443400 2866700 3283800 2914900 4525800 2 2 1 2 2 2 2 2 2 2 2 7643400 10820000 103980 15335000 4820700 4162100 6988700 3494700 4199400 3766000 7298700 7117200 10113000 652540 15159000 4680600 4914300 6889200 3595000 4504200 3666900 6944800 4 4 2 4 4 4 4 4 4 4 4 588940000 284100000 304840000 11728 1365 10887 62637;62638;62639;62640;62641;62642;62643 75989;75990;75991;75992;75993;75994;75995 75994 7 LIEVTETICKR Unmodified 1360.7384 0.73843593 2654 Q9BT09 CNPY3 Protein canopy homolog 3 yes yes 0 0 0 1 By MS/MS 6 0 1 1 52.872 52.992 3 1.6727E-06 15061 20211116_3445_TMUAki_TMT10x_S_F6 124.46 94.397 3249200 5287600 39964 5255900 3518000 3162700 2843400 3993000 3176000 3678100 4074000 3025600 4933700 310390 5332800 3358700 3369800 2929700 4008500 3248300 3605200 3902200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3249200 5287600 39964 5255900 3518000 3162700 2843400 3993000 3176000 3678100 4074000 3025600 4933700 310390 5332800 3358700 3369800 2929700 4008500 3248300 3605200 3902200 1 1 1 1 1 1 1 1 1 1 1 252710000 0 252710000 11729 2654 10888 62644 75996 75996 1 LIFDNLKK Unmodified 989.59097 0.59096706 497;1224 P05023;P05023-3;P05023-4;P13637;P13637-2;P13637-3;P50993;Q13733;P20648;P54707;P54707-2 ATP1A1;ATP1A3;ATP1A2;ATP1A4;ATP4A;ATP12A Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4;Potassium-transporting ATPase alpha chain 1;Potassium-transporting ATPase alpha chain 2 no no 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 57.634 57.508 3 0.00067407 18658 20211116_3429_TMUAki_TMT10x_P_F2 108.98 69.829 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11730 497;1224 10889 62645;62646 75997;75998 75998 2 LIFSTITSK Unmodified 1008.5855 0.58554733 1032 P43686;P43686-2 PSMC4 26S protease regulatory subunit 6B yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 67.615 67.404 2 2.0901E-08 21969 20211116_3442_TMUAki_TMT10x_S_F4 217.02 165.23 30755000 49813000 380400 46824000 42774000 55152000 35047000 48756000 43394000 42728000 44685000 28639000 46470000 3057200 48104000 40842000 55528000 36212000 49714000 43827000 41978000 43066000 6 6 5 6 6 6 6 6 6 6 6 16323000 25768000 260720 24074000 24572000 38495000 20339000 25545000 22648000 22574000 23842000 15201000 24038000 1711800 24895000 23470000 38036000 20924000 26537000 22982000 22170000 22963000 3 3 3 3 3 3 3 3 3 3 3 14432000 24045000 119690 22750000 18202000 16657000 14708000 23211000 20746000 20153000 20843000 13438000 22432000 1345400 23209000 17372000 17492000 15288000 23177000 20845000 19809000 20104000 3 3 2 3 3 3 3 3 3 3 3 2518400000 1395500000 1122900000 11731 1032 10890 62647;62648;62649;62650 75999;76000;76001;76002;76003;76004 76004 6 LIFYDLR Unmodified 938.52255 0.52255314 1760 Q15046;Q15046-2 KARS Lysine--tRNA ligase yes no 0 0 0 0 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 69.56 69.651 2 0.0018308 22021 20211116_3428_TMUAki_TMT10x_P_F1 132.96 88.349 24387000 42242000 45794 40655000 28551000 34264000 25624000 26539000 21779000 26585000 28905000 22706000 39410000 1958000 41491000 27295000 35126000 26026000 27374000 22578000 25962000 27663000 6 6 1 6 6 6 6 6 6 6 6 8317200 13730000 0 12591000 9762200 16620000 10181000 8404900 7632100 8332500 9861300 7743600 12807000 645020 12986000 9366700 16499000 10226000 8958000 7955000 8141000 9443800 2 2 0 2 2 2 2 2 2 2 2 16070000 28512000 45794 28064000 18789000 17644000 15444000 18134000 14147000 18252000 19043000 14962000 26603000 1313000 28505000 17928000 18628000 15800000 18416000 14623000 17821000 18219000 4 4 1 4 4 4 4 4 4 4 4 4618800000 2842300000 1776500000 11732 1760 10891 62651;62652;62653;62654;62655;62656 76005;76006;76007;76008;76009;76010 76005 6 LIGDAAK Unmodified 686.39629 0.39629 615;596;614 P0DMV8;P0DMV9;P0DMV8-2;P11142;P11142-2;P54652;P11021 HSPA1A;HSPA1B;HSPA8;HSPA2;HSPA5 Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;78 kDa glucose-regulated protein no no 0 0 0 0 By MS/MS By MS/MS 4.73 1.86 2 1 2 2 2 1 1 5 6 40.151 40.274 2 0.0056446 9675 20211116_3444_TMUAki_TMT10x_S_F5 107.43 33.014 71197000 124200000 535850 105760000 90880000 96842000 80507000 54882000 62704000 56909000 83874000 66287000 115830000 5635900 109060000 86844000 98263000 81653000 57978000 65321000 55496000 80255000 15 15 8 15 15 15 15 15 15 15 15 45633000 79793000 52292 64986000 62386000 73946000 50865000 33406000 39921000 35685000 51736000 42483000 74400000 3282300 67476000 59481000 73868000 51858000 36079000 41511000 34758000 49542000 6 6 2 6 6 6 6 6 6 6 6 25564000 44410000 483560 40775000 28495000 22895000 29642000 21476000 22783000 21224000 32139000 23804000 41425000 2353600 41586000 27363000 24395000 29795000 21899000 23810000 20739000 30714000 9 9 6 9 9 9 9 9 9 9 9 5161600000 2781400000 2380100000 11733 596;615;614 10892 62657;62658;62659;62660;62661;62662;62663;62664;62665;62666;62667 76011;76012;76013;76014;76015;76016;76017;76018;76019;76020;76021;76022;76023;76024 76020 14 LIGEYGLR Unmodified 919.51272 0.51271674 1054 P46781 RPS9 40S ribosomal protein S9 yes yes 0 0 0 0 By MS/MS By MS/MS 4.89 1.52 2 2 2 2 1 4 5 52.266 52.296 2 0.00044751 14331 20211116_3434_TMUAki_TMT10x_P_F6 181.49 129.92 50318000 83286000 284890 89590000 81553000 85375000 55586000 71015000 72799000 61204000 73310000 46849000 77738000 4397200 90888000 77531000 86912000 58274000 72635000 73325000 60180000 70704000 12 12 6 12 12 12 12 12 12 12 12 25396000 41573000 132900 45547000 56600000 65116000 34956000 35290000 36940000 30472000 37215000 23646000 38807000 2480400 46478000 53722000 64459000 36651000 37241000 37503000 29959000 35891000 6 6 3 6 6 6 6 6 6 6 6 24921000 41712000 151990 44042000 24954000 20259000 20630000 35726000 35859000 30732000 36095000 23203000 38931000 1916700 44410000 23808000 22453000 21623000 35393000 35822000 30220000 34812000 6 6 3 6 6 6 6 6 6 6 6 6244400000 3621100000 2623300000 11734 1054 10893 62668;62669;62670;62671;62672;62673;62674;62675;62676 76025;76026;76027;76028;76029;76030;76031;76032;76033;76034;76035;76036 76030 12 LIGFMRPENGNPQQMQQELQR 2 Oxidation (M) 2545.2166 0.21657485 354 O75694;O75694-2 NUP155 Nuclear pore complex protein Nup155 yes no 0 0 2 1 By MS/MS 7 0 1 1 43.832 44.38 3 5.7091E-07 13479 20211116_3446_TMUAki_TMT10x_S_F7 85.054 74.324 393460 696350 6329.6 669120 346930 477580 289430 1092700 1188200 862870 753100 366400 649670 37868 681670 331590 512160 324410 1073000 1154000 852190 739950 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 393460 696350 6329.6 669120 346930 477580 289430 1092700 1188200 862870 753100 366400 649670 37868 681670 331590 512160 324410 1073000 1154000 852190 739950 2 2 2 2 2 2 2 2 2 2 2 99679000 0 99679000 11735 354 10894 62677 76037;76038 76037 272;273 2 LIGLSATLPNYEDVATFLR Unmodified 2092.1205 0.12045607 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 By MS/MS 2 0 1 1 81.107 81.092 3 9.8158E-07 26937 20211116_3440_TMUAki_TMT10x_S_F2 98.227 86.753 1412600 2465200 27238 2200000 1853500 1572200 1986400 1608000 1369000 1484500 1684300 1315500 2299300 148670 2253700 1782200 1641200 1988800 1629400 1430900 1454900 1615100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1412600 2465200 27238 2200000 1853500 1572200 1986400 1608000 1369000 1484500 1684300 1315500 2299300 148670 2253700 1782200 1641200 1988800 1629400 1430900 1454900 1615100 1 1 1 1 1 1 1 1 1 1 1 439720000 0 439720000 11736 352 10895 62678 76039 76039 1 LIGNHPDVLPFALR Unmodified 1560.8776 0.87764703 2950 Q9NU22 MDN1 Midasin yes yes 0 0 0 0 By matching By MS/MS 1.33 0.471 2 1 1 2 66.499 66.349 3 0.00012716 21044 20211116_3440_TMUAki_TMT10x_S_F2 84.297 57.841 1241000 2280600 26317 2080300 1346200 1360600 1303300 1584400 1343400 1498100 1784300 1155700 2127300 128890 2125600 1291400 1435500 1325500 1597000 1380600 1466700 1707600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1241000 2280600 26317 2080300 1346200 1360600 1303300 1584400 1343400 1498100 1784300 1155700 2127300 128890 2125600 1291400 1435500 1325500 1597000 1380600 1466700 1707600 1 1 1 1 1 1 1 1 1 1 1 507570000 205060000 302510000 11737 2950 10896 62679;62680;62681 76040 76040 1 LIGPLSHSILTEAIK Unmodified 1590.9345 0.9344932 2585 Q99575 POP1 Ribonucleases P/MRP protein subunit POP1 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 72.492 72.323 3 3.2983E-14 24652 20211116_3429_TMUAki_TMT10x_P_F2 142.39 117.54 10574000 17017000 103550 17562000 11207000 17229000 11868000 11186000 9771200 10473000 12536000 9845900 15881000 956040 17873000 10767000 17436000 11939000 11657000 10130000 10258000 12008000 3 3 2 3 3 3 3 3 3 3 3 7236100 11569000 71852 11509000 7261100 13905000 7986300 7988400 6516700 6958700 8236800 6737900 10795000 641260 11781000 6983200 13885000 8017500 8389800 6755000 6838600 7892500 2 2 1 2 2 2 2 2 2 2 2 3337800 5448600 31694 6053100 3945700 3323800 3881700 3197600 3254500 3514500 4299500 3108000 5086400 314780 6091700 3783700 3551500 3921300 3267000 3375400 3419400 4115200 1 1 1 1 1 1 1 1 1 1 1 1485000000 562470000 922560000 11738 2585 10897 62682;62683 76041;76042;76043 76042 3 LIGPNCPGVINPGECK Unmodified 1723.8386 0.83856068 1202 P53597 SUCLG1 Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 56.752 57.278 3 8.6302E-05 18252 20211116_3435_TMUAki_TMT10x_P_F7 81.448 68.467 4409300 7777600 0 8449500 3817200 3578000 3346100 4864800 4716000 4630000 6064100 4105500 7259800 355680 8499600 3648100 3974400 3461100 4874200 4785600 4531600 5808100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4409300 7777600 0 8449500 3817200 3578000 3346100 4864800 4716000 4630000 6064100 4105500 7259800 355680 8499600 3648100 3974400 3461100 4874200 4785600 4531600 5808100 1 1 0 1 1 1 1 1 1 1 1 384120000 0 384120000 11739 1202 10898 62684;62685 76044;76045 76044 2 LIHPDEDISLEER Unmodified 1564.7733 0.77330111 230 O43670;O43670-2;O43670-3;O43670-4 ZNF207 BUB3-interacting and GLEBS motif-containing protein ZNF207 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 47.823 47.739 3 2.4997E-19 16132 20211116_3441_TMUAki_TMT10x_S_F3 186.76 162.69 27433000 43943000 407080 48334000 46039000 52373000 32883000 41490000 40713000 36257000 39815000 25545000 41020000 2823200 49059000 43833000 52861000 34285000 42577000 41044000 35626000 38436000 14 14 11 14 14 14 14 14 14 14 14 17047000 26369000 238560 27840000 36135000 43700000 24134000 26001000 26011000 22591000 24453000 15874000 24611000 1831900 28534000 34356000 43142000 25165000 27227000 26325000 22204000 23637000 8 8 6 8 8 8 8 8 8 8 8 10386000 17574000 168520 20494000 9904700 8673500 8749500 15489000 14702000 13666000 15362000 9671500 16409000 991310 20524000 9476900 9718300 9119700 15350000 14720000 13422000 14798000 6 6 5 6 6 6 6 6 6 6 6 6047100000 3069500000 2977600000 11740 230 10899 62686;62687;62688;62689;62690;62691;62692;62693 76046;76047;76048;76049;76050;76051;76052;76053;76054;76055;76056;76057;76058;76059 76058 14 LIHPDEDISLEERR Unmodified 1720.8744 0.87441214 230 O43670;O43670-2;O43670-3;O43670-4 ZNF207 BUB3-interacting and GLEBS motif-containing protein ZNF207 yes no 0 0 0 1 By MS/MS By MS/MS 2.75 0.829 2 1 1 1 3 40.612 40.536 4 3.8693E-33 13318 20211116_3441_TMUAki_TMT10x_S_F3 220.53 189.57 2532800 4107600 47819 4522300 3190900 2838600 2448700 3741000 3756800 3071500 3659400 2358700 3834400 263770 4559000 3043900 3015900 2563100 3738000 3761200 3027400 3533100 5 5 5 5 5 5 5 5 5 5 5 441320 588310 11125 731450 1159100 1123500 581470 754740 717560 626410 662100 411000 549490 57010 741950 1097600 1112100 624230 782140 722070 617070 640420 1 1 1 1 1 1 1 1 1 1 1 2091500 3519300 36694 3790800 2031800 1715100 1867200 2986300 3039200 2445100 2997300 1947700 3284900 206760 3817100 1946300 1903800 1938900 2955900 3039100 2410300 2892700 4 4 4 4 4 4 4 4 4 4 4 778900000 342070000 436840000 11741 230 10900 62694;62695;62696;62697 76060;76061;76062;76063;76064 76062 5 LIHTLDDR Unmodified 981.52434 0.52434406 2715 Q9BXP5;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3 SRRT Serrate RNA effector molecule homolog yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 1 1 1 1 2 36.484 36.511 3 0.00061644 11614 20211116_3441_TMUAki_TMT10x_S_F3 106.93 56.223 346360 528040 7840.7 571030 700530 689260 451340 313220 381060 357560 431450 322550 492870 40983 581280 665910 686430 468670 338770 392530 347390 414640 1 1 1 1 1 1 1 1 1 1 1 346360 528040 7840.7 571030 700530 689260 451340 313220 381060 357560 431450 322550 492870 40983 581280 665910 686430 468670 338770 392530 347390 414640 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 67089000 67089000 0 11742 2715 10901 62698;62699;62700 76065;76066;76067 76067 3 LIIAGTSAYAR Unmodified 1134.6397 0.63970816 915 P34897;P34897-3;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 3.5 2.69 2 2 2 2 4 4 51.095 50.951 2 1.0976E-29 14623 20211116_3440_TMUAki_TMT10x_S_F2 263.03 230.56 34156000 58295000 198750 57706000 53989000 62016000 39483000 48124000 46997000 41237000 48851000 31803000 54393000 2938800 58976000 51406000 62600000 41040000 49425000 47549000 40558000 47067000 11 11 5 11 11 11 11 11 11 11 11 19616000 32017000 114190 32376000 36977000 46914000 26781000 25998000 25828000 22768000 26581000 18264000 29877000 1864800 33221000 35199000 46426000 27669000 27392000 26344000 22369000 25618000 6 6 2 6 6 6 6 6 6 6 6 14540000 26278000 84561 25330000 17012000 15102000 12702000 22126000 21169000 18469000 22270000 13538000 24516000 1074000 25755000 16207000 16173000 13371000 22032000 21204000 18188000 21449000 5 5 3 5 5 5 5 5 5 5 5 6777900000 3941900000 2835900000 11743 915 10902 62701;62702;62703;62704;62705;62706;62707;62708 76068;76069;76070;76071;76072;76073;76074;76075;76076;76077;76078 76075 11 LIICNVTGIAHR Unmodified 1365.7551 0.75508905 2047 Q7KZ85 SUPT6H Transcription elongation factor SPT6 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 51.089 50.971 3 6.9612E-10 17543 20211116_3441_TMUAki_TMT10x_S_F3 158.08 141.83 4248100 7491400 83768 7480700 5681100 6030100 4390800 7677900 7534700 5540300 7004500 3956000 6990200 444710 7610600 5419500 6269500 4618500 7659200 7508900 5499000 6773400 4 4 3 4 4 4 4 4 4 4 4 1584700 2554200 60833 2575500 3068700 3572900 2072200 2323400 2288700 1894400 2434300 1475900 2383400 208860 2640800 2921100 3550200 2160800 2412500 2324000 1867900 2343700 2 2 2 2 2 2 2 2 2 2 2 2663500 4937200 22936 4905200 2612300 2457200 2318500 5354500 5246000 3645900 4570300 2480100 4606800 235850 4969800 2498500 2719300 2457800 5246700 5184800 3631200 4429700 2 2 1 2 2 2 2 2 2 2 2 544330000 188370000 355960000 11744 2047 10903 62709;62710;62711 76079;76080;76081;76082 76081 4 LIINSLYK Unmodified 962.58007 0.58006802 672 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 65.314 64.856 2 0.0067238 21659 20211116_3429_TMUAki_TMT10x_P_F2 85.666 44.679 6295800 10395000 0 10866000 5963300 6085000 5866000 6091800 5643200 5735600 7419800 5860600 9701100 341110 10980000 5704000 6494000 5948400 6182800 5813800 5616300 7102600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6295800 10395000 0 10866000 5963300 6085000 5866000 6091800 5643200 5735600 7419800 5860600 9701100 341110 10980000 5704000 6494000 5948400 6182800 5813800 5616300 7102600 1 1 0 1 1 1 1 1 1 1 1 197750000 0 197750000 11745 672 10904 62712;62713 76083;76084 76083 2 LIITQVR Unmodified 841.53854 0.53853756 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4.29 3.24 2 2 3 3 4 47.105 47.014 2 0.0012783 12981 20211116_3440_TMUAki_TMT10x_S_F2 143.23 40.211 14191000 21853000 51222 22569000 19824000 19781000 13895000 16569000 15508000 13850000 16782000 13213000 20394000 1225300 22932000 18857000 20252000 14454000 16927000 15751000 13639000 16149000 5 5 2 5 5 5 5 5 5 5 5 9421500 14189000 48937 14761000 15659000 15356000 9767200 11347000 10281000 9282400 11144000 8772200 13242000 853120 15027000 14865000 15517000 10231000 11677000 10467000 9150700 10723000 3 3 1 3 3 3 3 3 3 3 3 4769800 7663700 2285.6 7808600 4165400 4424900 4128000 5222000 5226600 4568000 5637900 4441000 7151500 372140 7905200 3992100 4734400 4223200 5249600 5283700 4488300 5425900 2 2 1 2 2 2 2 2 2 2 2 1272700000 813290000 459420000 11746 1018 10905 62714;62715;62716;62717;62718;62719;62720 76085;76086;76087;76088;76089;76090 76089 6 LIITSAEASPAECCQHAK Unmodified 1984.9346 0.93464591 1744 Q14C86;Q14C86-6;Q14C86-5;Q14C86-4;Q14C86-2;Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 yes no 0 0 0 0 By MS/MS 6 0 1 1 44.28 44.446 3 3.3116E-10 11534 20211116_3445_TMUAki_TMT10x_S_F6 107.7 88.624 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11747 1744 10906 62721 76091 76091 1 LIIVEGCQR Unmodified 1086.5856 0.5855641 497;1224 P05023;P05023-3;P05023-4;P13637;P13637-2;P13637-3;P50993;Q13733;P54707;P54707-2 ATP1A1;ATP1A3;ATP1A2;ATP1A4;ATP12A Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4;Potassium-transporting ATPase alpha chain 2 no no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 47.727 47.899 2 2.0654E-05 12924 20211116_3445_TMUAki_TMT10x_S_F6 145.34 70.152 2724300 4859200 27757 5532900 2813200 2602100 2567900 4252100 4172500 3604400 4237800 2536800 4536700 252980 5553000 2693000 2868700 2667200 4220600 4176900 3546900 4086100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2724300 4859200 27757 5532900 2813200 2602100 2567900 4252100 4172500 3604400 4237800 2536800 4536700 252980 5553000 2693000 2868700 2667200 4220600 4176900 3546900 4086100 1 1 1 1 1 1 1 1 1 1 1 444160000 0 444160000 11748 497;1224 10907 62722;62723;62724;62725 76092;76093;76094;76095 76095 4 LIIWDSYTTNK Unmodified 1352.6976 0.69761697 1376;1377 P62879;Q9HAV0;P62873;P62873-2 GNB2;GNB4;GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein subunit beta-4;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 no no 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 2 4 4 2 72.156 72.124 2;3 1.8556E-27 22687 20211116_3447_TMUAki_TMT10x_S_F8 230.24 189.21 23932000 38194000 129560 39745000 29358000 34472000 30712000 13104000 10473000 14944000 26096000 22283000 35645000 2124100 40358000 28188000 34963000 30455000 14456000 12094000 14519000 24690000 5 5 4 5 5 5 5 5 5 5 5 20878000 32945000 105440 34240000 25749000 31558000 27019000 10805000 8743700 12520000 22430000 19439000 30746000 1840600 34799000 24724000 31848000 26775000 12084000 10181000 12157000 21213000 4 4 3 4 4 4 4 4 4 4 4 3054000 5249000 24116 5505000 3608300 2914600 3692500 2298800 1728800 2424300 3666400 2843800 4898800 283440 5559200 3463400 3115100 3680300 2372100 1913400 2362500 3476900 1 1 1 1 1 1 1 1 1 1 1 2475800000 1932000000 543810000 11749 1377;1376 10908 62726;62727;62728;62729;62730;62731 76096;76097;76098;76099;76100;76101;76102 76102 7 LIKDDFLQQNGYTPYDR Unmodified 2085.0167 0.016719282 971 P38606;P38606-2 ATP6V1A V-type proton ATPase catalytic subunit A yes no 0 0 0 1 By MS/MS 7 0 1 1 62.702 63.373 3 0.013003 20757 20211116_3435_TMUAki_TMT10x_P_F7 50.358 38.884 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11750 971 10909 62732 76103 76103 1 LIKEELIR Unmodified 1012.6281 0.62808085 2049 Q7L014 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 48.193 48.319 3 0.019651 12763 20211116_3434_TMUAki_TMT10x_P_F6 61.56 6.0104 5275700 8446200 0 8764100 7491500 7495600 5912200 5829200 6224600 5901400 7228200 4911600 7882400 403420 8899400 7139200 7676800 6089300 6013000 6354400 5760600 6941700 2 2 0 2 2 2 2 2 2 2 2 2636900 4432300 0 4474400 5584100 5252800 3399900 2860100 3149600 3137700 3705200 2454800 4136000 203510 4573300 5295700 5249400 3555200 3037000 3234900 3053000 3557100 1 1 0 1 1 1 1 1 1 1 1 2638700 4013900 0 4289700 1907400 2242800 2512300 2969100 3074900 2763600 3523000 2456900 3746400 199920 4326200 1843500 2427400 2534100 2976000 3119500 2707600 3384600 1 1 0 1 1 1 1 1 1 1 1 276850000 163230000 113610000 11751 2049 10910 62733;62734 76104;76105 76104 2 LIKGDGEVLEEIVTK Unmodified 1641.9189 0.91890272 1962 Q66PJ3;Q66PJ3-2;Q66PJ3-7;Q66PJ3-3;Q66PJ3-5;Q66PJ3-4 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 yes no 0 0 0 1 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 72.032 71.769 3 1.2387E-14 23248 20211116_3431_TMUAki_TMT10x_P_F4 137.97 76.592 2524200 4381100 8203.5 4022500 3191300 2757800 2937100 3043200 2767000 2972000 3496500 2350300 4086700 226260 4110100 3054000 2893900 2987200 3077500 2848300 2905600 3350300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2524200 4381100 8203.5 4022500 3191300 2757800 2937100 3043200 2767000 2972000 3496500 2350300 4086700 226260 4110100 3054000 2893900 2987200 3077500 2848300 2905600 3350300 1 1 1 1 1 1 1 1 1 1 1 616390000 0 616390000 11752 1962 10911 62735;62736;62737;62738;62739 76106;76107;76108;76109 76106 4 LIKPYTR Unmodified 889.53854 0.53853756 1300 P61201;P61201-2 COPS2 COP9 signalosome complex subunit 2 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 37.071 36.824 3 0.07429 11767 20211116_3441_TMUAki_TMT10x_S_F3 45.335 7.1749 734480 1250200 11947 1247200 814350 642240 810330 794350 831680 748200 953400 683960 1166500 73146 1263500 781460 695010 822830 798580 849480 732630 915940 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 734480 1250200 11947 1247200 814350 642240 810330 794350 831680 748200 953400 683960 1166500 73146 1263500 781460 695010 822830 798580 849480 732630 915940 1 1 1 1 1 1 1 1 1 1 1 46647000 0 46647000 11753 1300 10912 62740;62741 76110;76111 76111 2 LILDSAR Unmodified 786.45995 0.45995289 853 P29401;P29401-2 TKT Transketolase yes no 0 0 0 0 By MS/MS 5 0 1 1 43.45 43.584 2 0.099082 10937 20211116_3444_TMUAki_TMT10x_S_F5 54.611 19.411 1524500 2453100 0 2778100 1482500 1125400 1351100 1587000 1734700 1478800 1961400 1419400 2290200 120530 2786400 1417800 1258800 1389200 1587000 1756000 1448800 1885000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1524500 2453100 0 2778100 1482500 1125400 1351100 1587000 1734700 1478800 1961400 1419400 2290200 120530 2786400 1417800 1258800 1389200 1587000 1756000 1448800 1885000 1 1 0 1 1 1 1 1 1 1 1 106250000 0 106250000 11754 853 10913 62742 76112 76112 1 LILEQMQKDPQALSEHLKNPVIAQK Unmodified 2870.5688 0.56879841 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 2 By MS/MS By MS/MS 2 0 2 1 1 65.992 65.724 5 3.9977E-38 22011 20211116_3429_TMUAki_TMT10x_P_F2 190.88 185.22 8534500 13209000 137120 10621000 9496900 15403000 11294000 8339600 8362200 9886100 9833300 7947500 12316000 848840 11090000 9159500 15238000 11271000 8881900 8687600 9591600 9440300 2 2 2 2 2 2 2 2 2 2 2 5341500 7484700 61664 6006200 6070800 10424000 7236300 4850900 5159500 6036800 5422500 4973900 6978500 510530 6297800 5854000 10221000 7214900 5248800 5349100 5847000 5222800 1 1 1 1 1 1 1 1 1 1 1 3193000 5724400 75454 4615000 3426100 4979400 4057500 3488700 3202700 3849300 4410800 2973600 5337400 338310 4791900 3305600 5016700 4056200 3633100 3338500 3744600 4217500 1 1 1 1 1 1 1 1 1 1 1 1447400000 887150000 560270000 11755 897 10914 62743;62744 76113;76114 76113 2 LILEVHQFSR Unmodified 1240.6928 0.69280637 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 52.017 52.017 3 8.9393E-09 14950 20211116_3436_TMUAki_TMT10x_P_F8 167.73 134.22 3184300 4708800 155640 5547500 3509300 4601500 3287600 3700800 3629100 3143700 3914600 2966100 4396900 413610 5586000 3368800 4725800 3356900 3791500 3687200 3093200 3767500 2 2 2 2 2 2 2 2 2 2 2 1616900 2313400 89685 2750400 2174700 3224200 1956800 1775700 1806000 1571800 2020300 1506100 2160300 225440 2782100 2085200 3222800 1991600 1872400 1851500 1543500 1942300 1 1 1 1 1 1 1 1 1 1 1 1567500 2395400 65960 2797200 1334600 1377300 1330800 1925100 1823100 1571800 1894300 1460000 2236700 188170 2804000 1283600 1503000 1365300 1919100 1835600 1549700 1825200 1 1 1 1 1 1 1 1 1 1 1 511410000 246070000 265340000 11756 1475 10915 62745;62746 76115;76116 76115 2 LILGLMMPPAHYDAK 2 Oxidation (M) 1700.863 0.86298452 548 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 2 0 By MS/MS 8 0 2 2 57.854 57.832 3 1.7406E-05 16755 20211116_3447_TMUAki_TMT10x_S_F8 86.291 67.695 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11757 548 10916 62747;62748 76117;76118 76117 498;499 2 LILIESR Unmodified 842.52255 0.52255314 1347 P62277 RPS13 40S ribosomal protein S13 yes yes 0 0 0 0 By MS/MS By MS/MS 6.29 1.03 2 2 2 1 3 4 54.675 54.948 2 0.0012651 17820 20211116_3446_TMUAki_TMT10x_S_F7 143.02 68.623 43389000 72443000 0 73534000 54966000 53001000 39263000 55482000 50900000 50551000 57633000 40394000 67601000 3101100 74632000 52266000 55316000 41007000 56138000 51511000 49574000 55388000 5 5 0 5 5 5 5 5 5 5 5 13988000 21018000 0 22301000 25768000 29835000 14656000 17288000 16316000 15344000 16804000 13022000 19617000 1031500 22773000 24409000 29647000 15499000 18152000 16543000 15065000 16195000 2 2 0 2 2 2 2 2 2 2 2 29401000 51424000 0 51233000 29199000 23167000 24607000 38194000 34584000 35207000 40829000 27372000 47984000 2069500 51860000 27858000 25670000 25509000 37985000 34968000 34508000 39193000 3 3 0 3 3 3 3 3 3 3 3 10127000000 4968200000 5159000000 11758 1347 10917 62749;62750;62751;62752;62753;62754;62755 76119;76120;76121;76122;76123;76124;76125 76124 7 LILPVGPAGGNQMLEQYDK Oxidation (M) 2058.0456 0.045576569 764 P22061;P22061-2 PCMT1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes no 0 0 1 0 By MS/MS By MS/MS 6.8 0.4 1 4 2 3 71.217 71.293 2;3 1.5903E-08 24547 20211116_3446_TMUAki_TMT10x_S_F7 109.35 97.912 14794000 25527000 272690 25654000 18129000 15395000 17194000 12686000 14307000 13298000 18336000 13777000 23820000 1504900 26009000 17375000 16256000 17401000 13053000 14824000 12963000 17563000 4 4 3 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14794000 25527000 272690 25654000 18129000 15395000 17194000 12686000 14307000 13298000 18336000 13777000 23820000 1504900 26009000 17375000 16256000 17401000 13053000 14824000 12963000 17563000 4 4 3 4 4 4 4 4 4 4 4 2261800000 0 2261800000 11759 764 10918 62756;62757;62758;62759;62760 76126;76127;76128;76129;76130;76131;76132 76131 878 7 LILPVGPAGGNQMLEQYDK Unmodified 2042.0507 0.050661947 764 P22061;P22061-2 PCMT1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes no 0 0 0 0 By matching By MS/MS 7.33 0.471 2 1 1 2 77.507 77.535 3 1.2613E-09 27231 20211116_3446_TMUAki_TMT10x_S_F7 120.63 104.68 13666000 25772000 293600 23709000 19065000 16640000 18942000 15071000 13649000 15779000 19908000 12727000 24040000 1482300 24227000 18295000 17352000 19056000 15424000 14339000 15381000 19011000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13666000 25772000 293600 23709000 19065000 16640000 18942000 15071000 13649000 15779000 19908000 12727000 24040000 1482300 24227000 18295000 17352000 19056000 15424000 14339000 15381000 19011000 2 2 2 2 2 2 2 2 2 2 2 2002200000 503060000 1499100000 11760 764 10918 62761;62762;62763 76133;76134 76133 2 LILPVGPAGGNQMLEQYDKLQDGSIK Oxidation (M) 2799.4477 0.44768022 764 P22061;P22061-2 PCMT1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes no 0 0 1 1 By MS/MS 7.5 0.5 1 1 2 73.498 73.505 4 3.6457E-17 23258 20211116_3447_TMUAki_TMT10x_S_F8 122.34 106.83 5924200 11363000 128470 8382300 12430000 13731000 11029000 19034000 16434000 15652000 12587000 5516300 10592000 610590 8841800 11885000 13777000 11428000 18984000 16345000 15426000 12261000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5924200 11363000 128470 8382300 12430000 13731000 11029000 19034000 16434000 15652000 12587000 5516300 10592000 610590 8841800 11885000 13777000 11428000 18984000 16345000 15426000 12261000 3 3 1 3 3 3 3 3 3 3 3 1986700000 0 1986700000 11761 764 10919 62764;62765 76135;76136;76137 76137 878 3 LILREEFTSR Unmodified 1262.6983 0.69828568 2455 Q96F63 CCDC97 Coiled-coil domain-containing protein 97 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0 3 2 1 46.168 46.708 3 3.3384E-06 14471 20211116_3446_TMUAki_TMT10x_S_F7 105.94 78.813 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11762 2455 10920 62766;62767;62768 76138;76139;76140 76140 3 LILSELR Unmodified 842.52255 0.52255314 3366 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 56.229 56.302 2 0.0036931 16399 20211116_3445_TMUAki_TMT10x_S_F6 117.17 0 + 4736200 7159600 0 8843900 2709500 3412900 3777400 3913800 4113200 3991400 5267300 4409700 6687000 354330 8822000 2624200 3823100 3786200 3956300 4210800 3895000 5045500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4736200 7159600 0 8843900 2709500 3412900 3777400 3913800 4113200 3991400 5267300 4409700 6687000 354330 8822000 2624200 3823100 3786200 3956300 4210800 3895000 5045500 1 1 0 1 1 1 1 1 1 1 1 335890000 0 335890000 11763 3366 10921 62769;62770 76141;76142 76142 2 LILTPFER Unmodified 987.57532 0.57531699 2767 Q9H089 LSG1 Large subunit GTPase 1 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 66.485 66.398 2 0.0010186 20273 20211116_3447_TMUAki_TMT10x_S_F8 129.68 70.901 2885600 4993800 30600 4532700 3563300 3489800 3169600 3771600 3474900 3617900 3803800 2687000 4658000 277250 4641100 3408600 3625800 3245100 3815900 3533400 3539700 3659200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2885600 4993800 30600 4532700 3563300 3489800 3169600 3771600 3474900 3617900 3803800 2687000 4658000 277250 4641100 3408600 3625800 3245100 3815900 3533400 3539700 3659200 1 1 1 1 1 1 1 1 1 1 1 387730000 0 387730000 11764 2767 10922 62771;62772;62773 76143;76144;76145 76145 3 LIMELTGGGQESSGLNLGK Oxidation (M) 1918.967 0.9669919 2885 Q9NP98 MYOZ1 Myozenin-1 yes yes 0 0 1 0 By MS/MS 4 0 1 1 62.223 62.335 3 0.046688 19432 20211116_3431_TMUAki_TMT10x_P_F4 40.085 9.1111 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11765 2885 10923 62774 76146 76146 3004 1 LIMGIGHR Oxidation (M) 911.50111 0.50110619 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 1 0 By MS/MS By MS/MS 2.56 2.06 3 3 2 1 3 6 33.563 33.508 2;3 0.00096352 9326 20211116_3439_TMUAki_TMT10x_S_F1 107.43 62.819 1589000 2528500 429.3 2307100 2390700 2021900 1740500 1842500 1986600 1704900 2141600 1479400 2358600 116500 2365000 2274700 2073300 1807000 1878300 2015800 1670800 2061200 7 7 1 7 7 7 7 7 7 7 7 849480 1265500 429.3 1126800 1595700 1289400 875720 835460 921940 793710 1082300 790840 1180300 65139 1161700 1511000 1293300 927350 871100 941580 776900 1039100 4 4 1 4 4 4 4 4 4 4 4 739510 1263100 0 1180300 795000 732470 864740 1007100 1064700 911200 1059300 688510 1178300 51361 1203300 763700 779980 879690 1007200 1074200 893880 1022100 3 3 0 3 3 3 3 3 3 3 3 388210000 157640000 230580000 11766 1200 10924 62775;62776;62777;62778;62779;62780;62781;62782;62783 76147;76148;76149;76150;76151;76152;76153;76154;76155 76151 1605 9 LIMGIGHR Unmodified 895.50619 0.50619157 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 39.567 39.483 3 0.00017019 12922 20211116_3441_TMUAki_TMT10x_S_F3 140.12 63.525 1791800 2778600 0 3290400 2813300 2288500 1849300 1845200 2007000 1707300 2238700 1668100 2594600 133450 3305600 2671400 2383200 1931200 1894400 2043100 1673200 2152400 4 4 0 4 4 4 4 4 4 4 4 922520 1430500 0 1689100 1995100 1716100 1094100 887210 969120 834640 1114900 858820 1335800 74099 1705300 1889200 1728000 1153000 942320 996560 817320 1071000 2 2 0 2 2 2 2 2 2 2 2 869320 1348000 0 1601300 818200 572400 755290 958030 1037900 872710 1123800 809320 1258800 59354 1600300 782170 655260 778160 952040 1046600 855850 1081400 2 2 0 2 2 2 2 2 2 2 2 337250000 226600000 110660000 11767 1200 10924 62784;62785;62786;62787;62788 76156;76157;76158;76159 76159 4 LIMVLAGASEFDPQYNK Oxidation (M) 1910.9448 0.94479989 3109 Q9UGP8 SEC63 Translocation protein SEC63 homolog yes yes 0 0 1 0 By MS/MS 7.5 0.5 1 1 2 78.52 78.53 3 0.0028177 25236 20211116_3447_TMUAki_TMT10x_S_F8 59.75 42.531 2122500 3328000 0 2858900 2420700 2323000 2653700 2242500 1948600 2617800 2613400 1976000 3103600 155230 2941700 2325300 2397700 2657800 2295300 2036800 2541200 2500500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2122500 3328000 0 2858900 2420700 2323000 2653700 2242500 1948600 2617800 2613400 1976000 3103600 155230 2941700 2325300 2397700 2657800 2295300 2036800 2541200 2500500 1 1 0 1 1 1 1 1 1 1 1 833490000 0 833490000 11768 3109 10925 62789;62790 76160 76160 3137 1 LINANMMVLGHEPR 2 Oxidation (M) 1625.8018 0.80178124 95 O00487 PSMD14 26S proteasome non-ATPase regulatory subunit 14 yes yes 0 0 2 0 By MS/MS By MS/MS 6 0 4 1 3 38.166 38.281 3 0.00013809 8798 20211116_3445_TMUAki_TMT10x_S_F6 80.287 67.927 1165100 1852100 6393.8 2401000 2788100 2283500 1493700 1706200 1897500 1368800 1787800 1084900 1730300 119220 2408900 2640800 2320600 1595300 1753800 1908800 1350700 1728000 5 5 4 5 5 5 5 5 5 5 5 858350 1349900 4436.9 1782100 2500700 2052800 1215700 1410800 1539400 1089600 1333700 799190 1261200 92230 1791500 2365400 2060100 1310400 1457200 1544700 1077400 1293000 2 2 1 2 2 2 2 2 2 2 2 306790 502170 1956.9 618980 287420 230780 277940 295450 358020 279180 454080 285670 469020 26988 617400 275470 260500 284900 296640 364130 273330 435060 3 3 3 3 3 3 3 3 3 3 3 95419000 75547000 19872000 11769 95 10926 62791;62792;62793;62794 76161;76162;76163;76164;76165;76166 76166 73;74 6 LINANMMVLGHEPR Oxidation (M) 1609.8069 0.80686662 95 O00487 PSMD14 26S proteasome non-ATPase regulatory subunit 14 yes yes 0 0 1 0 By MS/MS 7 0 1 1 47.691 48.287 3 0.020179 14634 20211116_3435_TMUAki_TMT10x_P_F7 49.482 33.258 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11770 95 10926 62795 76167 76167 73;74 1 LINANMMVLGHEPR Unmodified 1593.812 0.811952 95 O00487 PSMD14 26S proteasome non-ATPase regulatory subunit 14 yes yes 0 0 0 0 By MS/MS 8 0 1 1 56.31 56.459 3 0.013494 16731 20211116_3436_TMUAki_TMT10x_P_F8 55.66 40.994 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11771 95 10926 62796 76168 76168 1 LINEWSRPIFGLTSNYK Unmodified 2037.0684 0.068360922 2557 Q96ST2;Q96ST2-2;Q96ST2-3 IWS1 Protein IWS1 homolog yes no 0 0 0 1 By MS/MS 5 0 1 1 76.412 76.423 3 2.0196E-07 24357 20211116_3444_TMUAki_TMT10x_S_F5 102.58 83.749 4524100 8046500 162830 8288900 6885700 4470100 5440800 3588400 3618600 4237200 5573800 4213600 7509100 559910 8381900 6575900 4769600 5538000 3712300 3830400 4111600 5316300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4524100 8046500 162830 8288900 6885700 4470100 5440800 3588400 3618600 4237200 5573800 4213600 7509100 559910 8381900 6575900 4769600 5538000 3712300 3830400 4111600 5316300 1 1 1 1 1 1 1 1 1 1 1 246680000 0 246680000 11772 2557 10927 62797 76169 76169 1 LINKPGPDTFPDYGDVLR Unmodified 2016.0316 0.031641064 3101 Q9UER7;Q9UER7-3;Q9UER7-5;Q9UER7-4;Q9UER7-2 DAXX Death domain-associated protein 6 yes no 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 67.708 67.682 3 5.9081E-06 20737 20211116_3434_TMUAki_TMT10x_P_F6 92.474 82.816 2242000 4012900 83791 3824600 2913200 5275900 2980200 2971800 2707100 2924600 2955700 2088100 3743700 273370 3936700 2800100 5233400 3011000 3136400 2774800 2858200 2843500 1 1 1 1 1 1 1 1 1 1 1 2242000 4012900 83791 3824600 2913200 5275900 2980200 2971800 2707100 2924600 2955700 2088100 3743700 273370 3936700 2800100 5233400 3011000 3136400 2774800 2858200 2843500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 278440000 278440000 0 11773 3101 10928 62798;62799 76170;76171 76170 2 LINLVGESLR Unmodified 1112.6554 0.65535823 1047 P46379;P46379-2;P46379-3;P46379-4;P46379-5 BAG6 Large proline-rich protein BAG6 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 68.654 68.949 2 1.0869E-12 21345 20211116_3447_TMUAki_TMT10x_S_F8 195.04 102.39 13515000 21299000 14347 20639000 14804000 25484000 14877000 14043000 12242000 14284000 15458000 12583000 19872000 1099100 21175000 14194000 25405000 15005000 14862000 12683000 13940000 14812000 2 2 1 2 2 2 2 2 2 2 2 13515000 21299000 14347 20639000 14804000 25484000 14877000 14043000 12242000 14284000 15458000 12583000 19872000 1099100 21175000 14194000 25405000 15005000 14862000 12683000 13940000 14812000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1050200000 1050200000 0 11774 1047 10929 62800;62801;62802 76172;76173;76174 76174 3 LINNNPEIFGPLK Unmodified 1467.8086 0.80856441 2983 Q9NW13;Q9NW13-2 RBM28 RNA-binding protein 28 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 3 2 1 72.202 72.176 2;3 1.6096E-22 23222 20211116_3436_TMUAki_TMT10x_P_F8 207.29 139.73 12566000 20613000 209070 19872000 15280000 22344000 14960000 13427000 13258000 14687000 15579000 11701000 19231000 1254900 20362000 14655000 22409000 15138000 14139000 13645000 14293000 14957000 4 4 3 4 4 4 4 4 4 4 4 9028600 14563000 141570 14025000 11321000 19020000 11249000 9622400 9749100 10638000 11191000 8407500 13587000 892860 14420000 10861000 18857000 11367000 10288000 10035000 10347000 10751000 3 3 2 3 3 3 3 3 3 3 3 3537100 6050200 67503 5847700 3959000 3323800 3711300 3804400 3509400 4049800 4387600 3293900 5644700 362070 5942100 3793900 3552500 3771300 3851100 3610200 3945200 4205400 1 1 1 1 1 1 1 1 1 1 1 1434300000 871560000 562770000 11775 2983 10930 62803;62804;62805 76175;76176;76177;76178 76177 4 LINRPIIVFR Unmodified 1239.7816 0.7815618 1859 Q16658 FSCN1 Fascin yes yes 0 0 0 1 By MS/MS By MS/MS 6 1.25 2 3 4 3 2 7 7 54.9 55.109 2;3 1.9553E-14 15886 20211116_3445_TMUAki_TMT10x_S_F6 229.48 191.92 116150000 187620000 913740 202950000 131610000 166680000 117760000 119610000 101280000 122330000 133600000 108150000 175130000 10022000 205420000 125860000 170980000 119660000 124070000 104900000 119360000 127880000 17 17 12 17 17 17 17 17 17 17 17 58422000 89015000 473100 96677000 79939000 113530000 66083000 58504000 49749000 58601000 64172000 54396000 83090000 5047100 98337000 76294000 113380000 67249000 62263000 51838000 57229000 61458000 8 8 6 8 8 8 8 8 8 8 8 57733000 98607000 440650 106280000 51670000 53149000 51679000 61108000 51526000 63728000 69431000 53757000 92039000 4974700 107080000 49562000 57601000 52415000 61807000 53061000 62132000 66423000 9 9 6 9 9 9 9 9 9 9 9 23356000000 11156000000 12199000000 11776 1859 10931 62806;62807;62808;62809;62810;62811;62812;62813;62814;62815;62816;62817;62818;62819 76179;76180;76181;76182;76183;76184;76185;76186;76187;76188;76189;76190;76191;76192;76193;76194;76195;76196 76191 18 LINRPIIVFRGEHGFIGCR Unmodified 2253.2317 0.23169505 1859 Q16658 FSCN1 Fascin yes yes 0 0 0 2 By MS/MS 7 0.816 1 1 1 3 51.626 51.804 5 2.3052E-17 14606 20211116_3445_TMUAki_TMT10x_S_F6 144.25 135.2 4056300 6469500 95116 7033300 6589500 2901500 3507600 5344200 4005900 3630000 5169300 3777500 6038900 456090 7073500 6246300 3265600 3734500 5259000 4094800 3615900 4950700 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4056300 6469500 95116 7033300 6589500 2901500 3507600 5344200 4005900 3630000 5169300 3777500 6038900 456090 7073500 6246300 3265600 3734500 5259000 4094800 3615900 4950700 3 3 2 3 3 3 3 3 3 3 3 1150800000 0 1150800000 11777 1859 10932 62820;62821;62822 76197;76198;76199 76197 3 LIPDSIGK Unmodified 841.49092 0.49091866 1305 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 55.778 55.913 2 0.0014525 17020 20211116_3433_TMUAki_TMT10x_P_F5 121.62 65.608 11181000 16819000 134170 20290000 13456000 12183000 11031000 8709100 9164200 8867800 12725000 10411000 15707000 1083900 20333000 12849000 12833000 11259000 9034900 9531000 8654200 12165000 2 2 2 2 2 2 2 2 2 2 2 5070100 7004100 38678 8946800 7357900 7756000 4793500 3876700 3917000 4004700 5403300 4721100 6542800 488440 8972200 6993000 7887600 4969200 4141200 4076000 3905900 5166300 1 1 1 1 1 1 1 1 1 1 1 6110600 9815000 95489 11344000 6098100 4427200 6237900 4832400 5247100 4863000 7321400 5690300 9164100 595430 11361000 5856500 4945800 6289400 4893700 5455000 4748200 6998500 1 1 1 1 1 1 1 1 1 1 1 582240000 274140000 308100000 11778 1305 10933 62823;62824 76200;76201 76200 2 LIPDSIGKDIEK Unmodified 1326.7395 0.73948179 1305 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 0 1 By MS/MS By MS/MS 5.22 1.31 1 2 2 2 2 5 4 59.197 59.351 3 8.1666E-06 19078 20211116_3435_TMUAki_TMT10x_P_F7 103.76 70.673 174140000 296990000 1626500 291710000 310850000 310970000 190310000 367500000 323230000 276490000 290350000 162150000 277100000 17689000 298250000 295110000 316880000 203460000 368070000 321840000 273780000 281110000 16 16 14 16 16 16 16 16 16 16 16 73155000 119490000 1116900 115790000 196030000 223470000 120630000 147830000 131250000 110140000 116020000 68123000 111490000 8772400 120000000 186130000 219310000 126630000 152990000 132520000 109120000 112390000 7 7 6 7 7 7 7 7 7 7 7 100980000 177500000 509590 175920000 114820000 87505000 69679000 219670000 191980000 166350000 174340000 94026000 165620000 8916300 178260000 108980000 97568000 76825000 215080000 189330000 164670000 168720000 9 9 8 9 9 9 9 9 9 9 9 13922000000 9022200000 4899900000 11779 1305 10934 62825;62826;62827;62828;62829;62830;62831;62832;62833 76202;76203;76204;76205;76206;76207;76208;76209;76210;76211;76212;76213;76214;76215;76216;76217 76208 16 LIPFLEK Unmodified 858.52149 0.52149051 1522 Q05D32;Q05D32-2 CTDSPL2 CTD small phosphatase-like protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 75.881 75.835 2 0.034121 24673 20211116_3436_TMUAki_TMT10x_P_F8 77.741 28.382 8915000 14924000 145800 14583000 9341600 16803000 11242000 14084000 14748000 14034000 12937000 8301800 13925000 880970 14935000 9013700 16920000 11413000 14456000 14786000 13708000 12536000 2 2 2 2 2 2 2 2 2 2 2 4170000 6786400 49056 6570100 4796400 9788600 5857800 6828200 7027600 6606000 6241800 3883000 6331600 400210 6766000 4628600 9707000 5922600 7085200 7070300 6460900 6045500 1 1 1 1 1 1 1 1 1 1 1 4745000 8137900 96744 8013200 4545200 7014800 5384400 7256100 7720200 7427900 6694900 4418800 7593100 480760 8168700 4385100 7213300 5490100 7370500 7715400 7247400 6490100 1 1 1 1 1 1 1 1 1 1 1 729030000 340800000 388220000 11780 1522 10935 62834;62835 76218;76219 76218 2 LIPTELRR Unmodified 996.60801 0.60801411 2467 Q96G21 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes yes 0 0 0 1 By MS/MS 1 0 1 1 39.827 39.688 3 0.028261 11864 20211116_3439_TMUAki_TMT10x_S_F1 60.589 37.27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11781 2467 10936 62836 76220 76220 1 LIPVHQVR Unmodified 960.58688 0.58688473 3318 Q9Y5J1 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 33.844 33.849 3 0.00057384 9434 20211116_3439_TMUAki_TMT10x_S_F1 120.52 55.745 495390 919860 5440 883960 726580 1183000 575490 599320 572740 625440 686510 461300 858190 49379 908790 693210 1173600 591560 639580 586820 609760 658730 2 2 2 2 2 2 2 2 2 2 2 210690 425350 4738.1 404710 435660 720340 283960 293270 268980 291310 316510 196210 396820 25034 419050 414200 704770 295500 319680 275990 284590 303860 1 1 1 1 1 1 1 1 1 1 1 284700 494510 701.86 479250 290920 462680 291530 306040 303750 334120 370000 265090 461370 24345 489750 279000 468850 296060 319910 310830 325170 354870 1 1 1 1 1 1 1 1 1 1 1 85719000 32227000 53492000 11782 3318 10937 62837;62838 76221;76222 76222 2 LIQEQHPEEELIK Unmodified 1604.841 0.84098675 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 49.799 49.658 3 4.993E-12 16980 20211116_3441_TMUAki_TMT10x_S_F3 152.99 103.36 10158000 16845000 210750 20860000 14942000 14505000 10942000 12813000 12688000 11776000 14638000 9460100 15734000 1105600 20902000 14240000 15130000 11362000 13082000 12900000 11544000 14060000 5 5 5 5 5 5 5 5 5 5 5 4089700 6329000 63678 7840100 9608300 9845500 6138500 4886800 4870100 4510300 5575200 3808400 5911300 475700 7921400 9129500 9794800 6368700 5207600 5035000 4420500 5356400 2 2 2 2 2 2 2 2 2 2 2 6068800 10516000 147070 13020000 5333900 4659100 4803400 7926300 7817600 7266100 9062300 5651700 9822300 629920 12981000 5110000 5335500 4993400 7874300 7865300 7123600 8703500 3 3 3 3 3 3 3 3 3 3 3 980120000 686120000 294000000 11783 1663 10938 62839;62840;62841;62842;62843 76223;76224;76225;76226;76227;76228 76226 6 LIQMRPFLENR Oxidation (M) 1431.7657 0.76565374 1086 P49005 POLD2 DNA polymerase delta subunit 2 yes yes 0 0 1 1 By matching By MS/MS 1.67 0.471 1 2 2 1 43.626 43.535 3 0.048957 11601 20211116_3440_TMUAki_TMT10x_S_F2 48.044 32.473 556950 1020500 7539.3 1132900 595850 486030 545780 908020 800270 762250 998260 518630 952630 53746 1138100 570520 544510 564110 897550 810030 750460 956860 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 556950 1020500 7539.3 1132900 595850 486030 545780 908020 800270 762250 998260 518630 952630 53746 1138100 570520 544510 564110 897550 810030 750460 956860 1 1 1 1 1 1 1 1 1 1 1 201240000 147990000 53246000 11784 1086 10939 62844;62845;62846 76229 76229 1413 1 LIQNNHYAMEDVATRR Oxidation (M) 1945.9428 0.94284283 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 1 1 By MS/MS 4.67 0.471 1 2 3 31.953 31.923 3;4 3.0612E-21 7423 20211116_3433_TMUAki_TMT10x_P_F5 166.46 132.02 1190400 1957900 37952 2158700 2892400 2634200 1595500 1494900 1578600 1225800 1765300 1108600 1827700 157220 2195200 2743000 2628600 1685700 1569300 1613300 1208200 1697200 3 3 2 3 3 3 3 3 3 3 3 1190400 1957900 37952 2158700 2892400 2634200 1595500 1494900 1578600 1225800 1765300 1108600 1827700 157220 2195200 2743000 2628600 1685700 1569300 1613300 1208200 1697200 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 370550000 370550000 0 11785 1663 10940 62847;62848;62849 76230;76231;76232 76231 2229 3 LIQNVFEIK Unmodified 1102.6386 0.63864553 93 O00471 EXOC5 Exocyst complex component 5 yes yes 0 0 0 0 By matching By MS/MS 8 0 2 1 1 74.253 74.197 2 0.0034711 23538 20211116_3447_TMUAki_TMT10x_S_F8 81.263 39.689 3000300 5006000 15586 4553700 3475000 3091900 3327000 2699800 2318200 2836000 3819400 2793700 4669400 269920 4655600 3329300 3231200 3351200 2768800 2455800 2764200 3637900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3000300 5006000 15586 4553700 3475000 3091900 3327000 2699800 2318200 2836000 3819400 2793700 4669400 269920 4655600 3329300 3231200 3351200 2768800 2455800 2764200 3637900 1 1 1 1 1 1 1 1 1 1 1 562540000 402990000 159550000 11786 93 10941 62850;62851 76233 76233 1 LISEILSESVVPDVR Unmodified 1654.9142 0.91415169 2393 Q969G3;Q969G3-6;Q969G3-5;Q969G3-3;Q969G3-2;Q969G3-4 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.75 1.09 1 2 1 1 3 80.163 80.152 3 1.0597E-19 26767 20211116_3431_TMUAki_TMT10x_P_F4 172.1 150.55 2378300 4126500 12134 4276100 3211800 3677700 3156100 2680900 2299900 2532900 3482300 2214400 3851100 209400 4342800 3078200 3761100 3177800 2771600 2419200 2479900 3322600 3 3 1 3 3 3 3 3 3 3 3 710310 1194800 0 1405100 790580 1555100 1006400 836470 741750 784940 974710 661340 1115600 55930 1420900 763210 1558800 1001400 885190 774450 768730 933060 1 1 0 1 1 1 1 1 1 1 1 1668000 2931800 12134 2870900 2421200 2122700 2149700 1844400 1558200 1748000 2507600 1553100 2735400 153470 2921900 2315000 2202300 2176400 1886400 1644800 1711100 2389600 2 2 1 2 2 2 2 2 2 2 2 1716100000 686860000 1029200000 11787 2393 10942 62852;62853;62854;62855 76234;76235;76236;76237 76234 4 LISGWVSR Unmodified 916.51305 0.51305109 153 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 56.283 56.067 2 0.0043693 18538 20211116_3430_TMUAki_TMT10x_P_F3 93.561 29.013 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11788 153 10943 62856 76238 76238 1 LISKPVASDSTYFAWCPDGEHILTATCAPR Unmodified 3362.6064 0.60638249 2723 Q9BY44;Q9BY44-3;Q9BY44-4;Q9BY44-2 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes no 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 71.788 71.659 4 1.7165E-20 22872 20211116_3428_TMUAki_TMT10x_P_F1 135.39 132.26 12604000 20386000 27860 20072000 13843000 22404000 16438000 9055400 8981100 9809000 14075000 11735000 19021000 954860 20534000 13332000 22380000 16307000 9903200 9643800 9548900 13420000 4 4 1 4 4 4 4 4 4 4 4 12604000 20386000 27860 20072000 13843000 22404000 16438000 9055400 8981100 9809000 14075000 11735000 19021000 954860 20534000 13332000 22380000 16307000 9903200 9643800 9548900 13420000 4 4 1 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1450500000 1450500000 0 11789 2723 10944 62857;62858 76239;76240;76241;76242 76240 4 LISLTDENALSGNEELTVK Unmodified 2045.0528 0.052830017 672 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 By MS/MS By MS/MS 3.54 1.43 5 4 6 12 8 2 18 19 84.317 84.282 2;3 6.5297E-103 24275 20211116_3444_TMUAki_TMT10x_S_F5 342.32 319.2 100880000 171980000 1447900 156270000 121500000 150200000 123750000 104230000 97939000 105490000 129560000 93939000 160420000 9764500 160440000 116630000 152360000 124610000 108330000 101890000 102980000 124000000 44 44 26 44 44 44 44 44 44 44 44 49389000 81138000 903440 74435000 49359000 88194000 57247000 51234000 45381000 50641000 61401000 45991000 75685000 4788400 76615000 47571000 88167000 57288000 53938000 47255000 49483000 58736000 22 22 13 22 22 22 22 22 22 22 22 51492000 90847000 544440 81830000 72139000 62010000 66500000 52996000 52558000 54850000 68156000 47947000 84736000 4976100 83821000 69056000 64191000 67317000 54393000 54632000 53493000 65265000 22 22 13 22 22 22 22 22 22 22 22 15443000000 7649100000 7793500000 11790 672 10945 62859;62860;62861;62862;62863;62864;62865;62866;62867;62868;62869;62870;62871;62872;62873;62874;62875;62876;62877;62878;62879;62880;62881;62882;62883;62884;62885;62886;62887;62888;62889;62890;62891;62892;62893;62894;62895 76243;76244;76245;76246;76247;76248;76249;76250;76251;76252;76253;76254;76255;76256;76257;76258;76259;76260;76261;76262;76263;76264;76265;76266;76267;76268;76269;76270;76271;76272;76273;76274;76275;76276;76277;76278;76279;76280;76281;76282;76283;76284;76285;76286;76287;76288;76289;76290;76291;76292;76293;76294;76295 76290 53 LISQIQPEVDRER Unmodified 1581.8475 0.84746911 2939 Q9NRZ9;Q9NRZ9-4;Q9NRZ9-3;Q9NRZ9-2;Q9NRZ9-6;Q9NRZ9-5 HELLS Lymphoid-specific helicase yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 1 3 43.99 44.147 3 5.9703E-22 11198 20211116_3444_TMUAki_TMT10x_S_F5 165.54 131.65 5546100 8793400 91362 11389000 8167700 7298200 5384700 6986200 7687300 5673400 8049900 5164600 8214900 581670 11374000 7767200 7680300 5678800 7079600 7732600 5595000 7754200 3 3 3 3 3 3 3 3 3 3 3 2210900 3089100 34699 4224700 5121300 4821500 2878600 2553800 2883900 2011800 3109200 2058800 2886700 256400 4238600 4856200 4824000 3037300 2694700 2941600 1987100 2992400 1 1 1 1 1 1 1 1 1 1 1 3335200 5704300 56663 7164600 3046500 2476700 2506100 4432500 4803400 3661600 4940700 3105800 5328200 325270 7135800 2910900 2856200 2641400 4384800 4791000 3607900 4761800 2 2 2 2 2 2 2 2 2 2 2 919590000 527000000 392590000 11791 2939 10946 62896;62897;62898;62899 76296;76297;76298;76299;76300 76299 5 LISQLMDCCVDIK Carbamidomethyl (C);Oxidation (M) 1666.7728 0.77284888 3075 Q9UBD5;Q9UBD5-2;Q9UBD5-3 ORC3 Origin recognition complex subunit 3 yes no 0 1 1 0 By MS/MS 1 0 1 1 71.657 71.529 3 0.10414 24794 20211116_3439_TMUAki_TMT10x_S_F1 40.113 18.862 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11792 3075 10947 62900 76301 76301 25;26 3121 1 LISSVDPQFLK Unmodified 1245.6969 0.69688869 2692 Q9BVG4 PBDC1 Protein PBDC1 yes yes 0 0 0 0 By MS/MS By MS/MS 7.25 0.433 3 1 2 2 70.488 70.884 2 2.9649E-14 22719 20211116_3436_TMUAki_TMT10x_P_F8 157.66 104.34 5110200 8022400 0 7460900 6337700 10098000 5694100 6218600 6165800 6046100 6134200 4757900 7483700 422440 7690400 6059500 10037000 5824000 6513200 6250900 5912000 5918400 1 1 0 1 1 1 1 1 1 1 1 5110200 8022400 0 7460900 6337700 10098000 5694100 6218600 6165800 6046100 6134200 4757900 7483700 422440 7690400 6059500 10037000 5824000 6513200 6250900 5912000 5918400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 595250000 595250000 0 11793 2692 10948 62901;62902;62903;62904 76302;76303;76304;76305 76303 4 LISWYDNEFGYSNR Unmodified 1762.7951 0.79509919 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS 6.22 1.81 1 4 4 4 11 11 22 24 57 24 66.178 66.191 2;3 5.9828E-116 27070 20211116_3446_TMUAki_TMT10x_S_F7 381.17 368.6 487150000 804280000 5019900 798760000 534580000 561730000 622900000 212770000 164900000 281260000 496830000 453570000 750460000 38636000 811710000 514720000 579030000 613040000 235990000 199570000 271880000 469000000 77 77 34 77 77 77 77 77 76 77 77 269570000 430910000 1592600 425280000 278710000 377120000 354860000 115200000 89009000 153460000 256510000 250980000 402060000 20287000 433530000 269010000 381270000 347740000 131490000 108130000 148300000 242260000 56 56 24 56 56 56 56 56 55 56 56 217580000 373370000 3427200 373480000 255870000 184610000 268040000 97570000 75888000 127800000 240330000 202600000 348400000 18348000 378180000 245710000 197770000 265300000 104500000 91447000 123570000 226740000 21 21 10 21 21 21 21 21 21 21 21 169220000000 81296000000 87924000000 11794 489 10949 62905;62906;62907;62908;62909;62910;62911;62912;62913;62914;62915;62916;62917;62918;62919;62920;62921;62922;62923;62924;62925;62926;62927;62928;62929;62930;62931;62932;62933;62934;62935;62936;62937;62938;62939;62940;62941;62942;62943;62944;62945;62946;62947;62948;62949;62950;62951;62952;62953;62954;62955;62956;62957;62958;62959;62960;62961;62962;62963;62964;62965;62966;62967;62968;62969;62970;62971;62972;62973;62974;62975;62976;62977;62978;62979;62980;62981;62982;62983;62984;62985 76306;76307;76308;76309;76310;76311;76312;76313;76314;76315;76316;76317;76318;76319;76320;76321;76322;76323;76324;76325;76326;76327;76328;76329;76330;76331;76332;76333;76334;76335;76336;76337;76338;76339;76340;76341;76342;76343;76344;76345;76346;76347;76348;76349;76350;76351;76352;76353;76354;76355;76356;76357;76358;76359;76360;76361;76362;76363;76364;76365;76366;76367;76368;76369;76370;76371;76372;76373;76374;76375;76376;76377;76378;76379;76380;76381;76382;76383;76384;76385;76386;76387;76388;76389;76390;76391;76392;76393;76394 76390 89 LITEDVQGK Unmodified 1001.5393 0.53932542 1305 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 0 0 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 46.586 46.578 2 6.3424E-06 13359 20211116_3442_TMUAki_TMT10x_S_F4 180.34 123.3 26286000 41612000 108180 45885000 40842000 38542000 30002000 27258000 28850000 25208000 35339000 24474000 38844000 2329300 46398000 38885000 39463000 30963000 28222000 29630000 24704000 33890000 6 6 3 6 6 6 6 6 6 6 6 14774000 22207000 45590 24570000 29465000 29255000 17930000 14795000 15820000 13492000 18912000 13755000 20731000 1358100 24968000 27958000 29189000 18725000 15733000 16296000 13230000 18148000 3 3 1 3 3 3 3 3 3 3 3 11512000 19405000 62591 21315000 11377000 9286300 12072000 12464000 13030000 11716000 16427000 10719000 18114000 971200 21430000 10927000 10274000 12238000 12489000 13335000 11473000 15741000 3 3 2 3 3 3 3 3 3 3 3 797740000 493040000 304700000 11795 1305 10950 62986;62987;62988;62989;62990 76395;76396;76397;76398;76399;76400;76401 76399 7 LITGLGVGR Unmodified 884.54435 0.54435122 2629 Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 0 0 0 0 By MS/MS 2 0 1 1 52.882 52.7 2 3.3526E-05 15408 20211116_3440_TMUAki_TMT10x_S_F2 127.02 68.342 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11796 2629 10951 62991 76402 76402 1 LITKPSEGTTLR Unmodified 1314.7507 0.75071518 1130 P49959;P49959-2;P49959-3 MRE11A Double-strand break repair protein MRE11A yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 40.302 40.536 3 0.0010211 9692 20211116_3447_TMUAki_TMT10x_S_F8 74.853 30.089 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11797 1130 10952 62992;62993 76403;76404 76404 2 LITKPSEGTTLRVEDLVK Unmodified 1998.1361 0.13610614 1130 P49959;P49959-2;P49959-3 MRE11A Double-strand break repair protein MRE11A yes no 0 0 0 2 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 59.244 59.212 4 2.0285E-12 17336 20211116_3447_TMUAki_TMT10x_S_F8 138.07 114.03 43828000 71747000 257740 72947000 58643000 77768000 46019000 95419000 81637000 72809000 69990000 40810000 66952000 4048100 74405000 55925000 79324000 48442000 95448000 81080000 72040000 67877000 7 7 5 7 7 7 7 7 7 7 7 19457000 30674000 153680 31072000 30110000 51882000 26183000 45682000 37492000 34150000 30450000 18117000 28624000 1905500 31982000 28781000 51431000 27114000 46414000 37397000 33828000 29592000 2 2 2 2 2 2 2 2 2 2 2 24371000 41073000 104060 41875000 28533000 25886000 19836000 49738000 44145000 38658000 39540000 22692000 38329000 2142600 42423000 27144000 27893000 21328000 49034000 43683000 38212000 38285000 5 5 3 5 5 5 5 5 5 5 5 5475100000 3411400000 2063600000 11798 1130 10953 62994;62995;62996;62997 76405;76406;76407;76408;76409;76410;76411 76410 7 LITLEEEMTK Unmodified 1205.6213 0.62134049 533 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 By MS/MS By MS/MS 2.22 1.03 3 2 3 1 3 6 70.255 70.054 2;3 9.2737E-19 23765 20211116_3429_TMUAki_TMT10x_P_F2 244.55 180.29 45345000 71211000 129990 82760000 56868000 47250000 48849000 22145000 18777000 25004000 46966000 42218000 66490000 3598400 83082000 54305000 49761000 49038000 23868000 21419000 24302000 44434000 7 7 2 7 7 7 7 7 7 7 7 23484000 35883000 22120 42173000 32489000 31589000 26940000 10030000 9189400 12536000 23263000 21865000 33506000 1920600 42421000 31003000 32349000 27067000 11361000 10625000 12140000 22005000 3 3 1 3 3 3 3 3 3 3 3 21861000 35328000 107870 40587000 24379000 15661000 21909000 12115000 9587700 12468000 23703000 20353000 32984000 1677800 40661000 23302000 17412000 21971000 12507000 10794000 12163000 22429000 4 4 1 4 4 4 4 4 4 4 4 3406000000 1392400000 2013600000 11799 533 10954 62998;62999;63000;63001;63002;63003;63004;63005;63006 76412;76413;76414;76415;76416;76417;76418;76419;76420;76421 76414 10 LITLEEEMTK Oxidation (M) 1221.6163 0.61625511 533 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 1 0 By MS/MS By MS/MS 3.33 0.471 4 2 2 4 55.808 55.602 2;3 0.0017413 18394 20211116_3430_TMUAki_TMT10x_P_F3 77.379 60.053 13987000 22970000 118610 23359000 16806000 17500000 13799000 18508000 17609000 15688000 19774000 13024000 21435000 1272900 23715000 16044000 18212000 14272000 18683000 17825000 15438000 19008000 6 6 5 6 6 6 6 6 6 6 6 4815500 7170900 18931 7115300 7588100 9162500 5471300 5051300 5115400 4562700 6252400 4483600 6691000 418970 7293300 7221300 9115500 5649400 5328700 5260000 4476300 5996200 2 2 1 2 2 2 2 2 2 2 2 9171600 15799000 99675 16244000 9218300 8337600 8328100 13457000 12494000 11125000 13521000 8540400 14744000 853940 16422000 8822600 9096500 8623100 13354000 12565000 10962000 13012000 4 4 4 4 4 4 4 4 4 4 4 1760900000 695390000 1065500000 11800 533 10954 63007;63008;63009;63010;63011;63012 76422;76423;76424;76425;76426;76427 76423 457 6 LITPAVVSER Unmodified 1083.6288 0.62880913 1372 P62851 RPS25 40S ribosomal protein S25 yes yes 0 0 0 0 By MS/MS By MS/MS 5.11 1.45 2 1 2 2 2 4 5 49.585 49.75 2 7.5966E-11 14456 20211116_3433_TMUAki_TMT10x_P_F5 204.34 132.46 56478000 90764000 797590 98923000 97652000 103040000 64974000 73422000 73456000 66319000 77772000 52587000 84723000 5274700 100400000 92813000 104050000 67877000 75932000 74511000 65063000 74890000 12 12 7 12 12 12 12 12 12 12 12 39000000 61327000 638080 67361000 81094000 87711000 48965000 50630000 50160000 46134000 53012000 36312000 57248000 3721900 68597000 76942000 87266000 51384000 53214000 51078000 45242000 51050000 7 7 4 7 7 7 7 7 7 7 7 17478000 29437000 159510 31563000 16558000 15326000 16009000 22792000 23296000 20185000 24760000 16274000 27475000 1552800 31806000 15871000 16782000 16493000 22719000 23433000 19821000 23840000 5 5 3 5 5 5 5 5 5 5 5 13678000000 7263300000 6415100000 11801 1372 10955 63013;63014;63015;63016;63017;63018;63019;63020;63021 76428;76429;76430;76431;76432;76433;76434;76435;76436;76437;76438 76429 11 LITQTFSHHNQLAQK Unmodified 1764.9271 0.92711641 3226 Q9Y266 NUDC Nuclear migration protein nudC yes yes 0 0 0 0 By MS/MS By MS/MS 3.17 1.57 1 2 1 2 4 2 40.039 40.04 4 1.2639E-19 9470 20211116_3444_TMUAki_TMT10x_S_F5 172.43 138.65 5417100 8189500 96876 10678000 12562000 10891000 5846300 10607000 12355000 9132800 8775900 5044100 7651000 577400 10721000 11878000 11076000 6482800 10755000 12157000 8980300 8576600 6 6 1 6 6 6 6 6 6 6 6 3288000 4566800 0 5970800 10395000 9095700 4346300 5709100 6910600 4824700 5102300 3061000 4266500 314630 6038700 9811300 8997300 4804300 5949100 6854000 4748500 4978000 3 3 0 3 3 3 3 3 3 3 3 2129100 3622700 96876 4707700 2166700 1795600 1500000 4897800 5444000 4308100 3673600 1983100 3384400 262770 4682400 2066400 2078600 1678500 4805600 5303000 4231800 3598600 3 3 1 3 3 3 3 3 3 3 3 1069200000 892940000 176230000 11802 3226 10956 63022;63023;63024;63025;63026;63027 76439;76440;76441;76442;76443;76444 76444 6 LITTQQWLIK Unmodified 1242.7336 0.73360855 475 P00846 MT-ATP6 ATP synthase subunit a yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 73.634 73.55 2 4.8658E-10 23965 20211116_3431_TMUAki_TMT10x_P_F4 195.79 133.24 31564000 54421000 64547 52708000 38659000 41769000 38374000 23378000 20328000 24043000 36391000 29388000 50774000 2609600 53728000 37054000 42813000 38380000 24717000 22040000 23454000 34607000 6 6 2 6 6 6 6 6 6 6 6 19821000 32906000 64547 32055000 24096000 31967000 25884000 14564000 12554000 14965000 22278000 18455000 30701000 1723800 32760000 23151000 32180000 25749000 15698000 13700000 14599000 21190000 4 4 2 4 4 4 4 4 4 4 4 11743000 21516000 0 20652000 14563000 9802100 12489000 8813500 7773900 9078100 14112000 10933000 20073000 885780 20967000 13903000 10633000 12631000 9018800 8339800 8855300 13417000 2 2 0 2 2 2 2 2 2 2 2 1555800000 1204000000 351820000 11803 475 10957 63028;63029;63030 76445;76446;76447;76448;76449;76450 76448 6 LIVAYVDDLDRR Unmodified 1446.7831 0.78307794 132 O14776;O14776-2 TCERG1 Transcription elongation regulator 1 yes no 0 0 0 1 By MS/MS By MS/MS 5.17 1.07 2 2 1 1 4 2 64.489 64.564 3 4.1961E-36 20860 20211116_3442_TMUAki_TMT10x_S_F4 244.71 186.54 14192000 23369000 69850 22966000 17519000 27224000 17422000 17274000 17335000 17777000 17302000 13214000 21804000 1220100 23521000 16795000 27248000 17674000 18080000 17638000 17341000 16692000 5 5 2 5 5 5 5 5 5 5 5 11602000 18846000 69850 18502000 14440000 24458000 14815000 13786000 14160000 14316000 13728000 10803000 17584000 1000000 18989000 13855000 24309000 14988000 14571000 14419000 13960000 13257000 4 4 2 4 4 4 4 4 4 4 4 2589800 4522900 0 4463600 3078700 2766100 2606700 3487400 3175400 3460500 3573600 2411300 4220100 220080 4532400 2940000 2938800 2686400 3508500 3219700 3380800 3435000 1 1 0 1 1 1 1 1 1 1 1 2189400000 1581900000 607540000 11804 132 10958 63031;63032;63033;63034;63035;63036 76451;76452;76453;76454;76455;76456;76457 76456 7 LIVDAFLQQLPNCVNR Unmodified 1899.0037 0.003652175 2851 Q9HAU5 UPF2 Regulator of nonsense transcripts 2 yes yes 0 0 0 0 By MS/MS 4 0 1 1 80.446 80.431 3 2.6218E-08 27267 20211116_3442_TMUAki_TMT10x_S_F4 119.62 101.2 1196300 1893900 24208 1895600 1325000 1102200 1416300 910070 798100 977410 1347900 1114100 1767200 123550 1921900 1274300 1167500 1412700 937010 858490 951810 1283200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1196300 1893900 24208 1895600 1325000 1102200 1416300 910070 798100 977410 1347900 1114100 1767200 123550 1921900 1274300 1167500 1412700 937010 858490 951810 1283200 1 1 1 1 1 1 1 1 1 1 1 370240000 0 370240000 11805 2851 10959 63037 76458 76458 1 LIVDEAINEDNSVVSLSQPK Unmodified 2169.1165 0.11649291 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 By MS/MS By MS/MS 3.04 1.43 5 5 4 6 5 13 12 76.722 76.683 2;3;4 7.0746E-91 26388 20211116_3429_TMUAki_TMT10x_P_F2 321.67 299.44 148960000 241960000 736990 220280000 164790000 215080000 175370000 149500000 148400000 157390000 183760000 138680000 225690000 9954400 226170000 158170000 217950000 176490000 155540000 153410000 153390000 176170000 28 28 10 28 28 28 28 28 28 28 28 72664000 116400000 552560 105840000 67833000 133770000 85461000 74260000 73390000 76058000 87079000 67655000 108580000 5673700 109140000 65466000 133220000 85391000 78559000 75676000 74208000 83578000 14 14 6 14 14 14 14 14 14 14 14 76295000 125550000 184430 114440000 96955000 81303000 89905000 75237000 75011000 81333000 96678000 71028000 117110000 4280600 117030000 92701000 84734000 91102000 76984000 77732000 79183000 92591000 14 14 4 14 14 14 14 14 14 14 14 56213000000 31457000000 24756000000 11806 1235 10960 63038;63039;63040;63041;63042;63043;63044;63045;63046;63047;63048;63049;63050;63051;63052;63053;63054;63055;63056;63057;63058;63059;63060;63061;63062 76459;76460;76461;76462;76463;76464;76465;76466;76467;76468;76469;76470;76471;76472;76473;76474;76475;76476;76477;76478;76479;76480;76481;76482;76483;76484;76485;76486;76487 76465 29 LIVDHNIADYMTAK Unmodified 1602.8076 0.80757813 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 By MS/MS 7 0 1 1 64.745 65.388 3 9.1149E-10 21592 20211116_3435_TMUAki_TMT10x_P_F7 112.72 92.06 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11807 1997 10961 63063 76488 76488 1 LIVENLSSR Unmodified 1029.5819 0.58185893 1613;1612 Q13247;Q13247-3;Q08170;Q13243;Q13243-3 SRSF6;SRSF4;SRSF5 Serine/arginine-rich splicing factor 6;Serine/arginine-rich splicing factor 4;Serine/arginine-rich splicing factor 5 no no 0 0 0 0 By MS/MS By MS/MS 5.5 1.12 2 2 2 2 4 4 48.795 49.048 2 6.0731E-06 13117 20211116_3444_TMUAki_TMT10x_S_F5 163.69 120.64 82381000 131410000 859090 147760000 113490000 110670000 81605000 119460000 116500000 102370000 121180000 76710000 122680000 7871900 149030000 108060000 115230000 85523000 120500000 117150000 100690000 116750000 11 11 8 11 11 11 11 11 11 11 11 29371000 44296000 355500 48451000 60903000 65372000 36153000 40753000 39315000 33802000 42534000 27349000 41348000 3148700 49388000 57792000 65000000 38064000 42470000 39972000 33299000 40931000 4 4 3 4 4 4 4 4 4 4 4 53011000 87117000 503600 99309000 52586000 45301000 45452000 78704000 77180000 68571000 78648000 49361000 81335000 4723200 99642000 50265000 50232000 47459000 78032000 77181000 67387000 75823000 7 7 5 7 7 7 7 7 7 7 7 7458100000 3845100000 3613000000 11808 1613;1612 10962 63064;63065;63066;63067;63068;63069;63070;63071 76489;76490;76491;76492;76493;76494;76495;76496;76497;76498;76499 76496 11 LIVGLMRPPAYCDAK Oxidation (M) 1718.8848 0.88478259 548 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 1 1 By MS/MS By MS/MS 2 0 2 1 1 54.026 53.804 3 0.0039897 15856 20211116_3440_TMUAki_TMT10x_S_F2 61.657 56.553 14375000 24518000 234260 26168000 19486000 27346000 17075000 24071000 25014000 21986000 22186000 13386000 22884000 1477500 26597000 18638000 27712000 17692000 24576000 24999000 21559000 21489000 4 4 3 4 4 4 4 4 4 4 4 7801200 12825000 192910 13652000 12730000 20228000 10709000 12284000 12696000 11448000 11153000 7265100 11971000 895580 13968000 12167000 20022000 11030000 12865000 12774000 11215000 10806000 2 2 2 2 2 2 2 2 2 2 2 6573300 11692000 41351 12516000 6756900 7118700 6366300 11787000 12318000 10538000 11033000 6120700 10913000 581910 12629000 6471200 7689800 6662300 11711000 12225000 10343000 10683000 2 2 1 2 2 2 2 2 2 2 2 1299900000 615700000 684150000 11809 548 10963 63072;63073 76500;76501;76502;76503 76502 500 4 LIVGTAGR Unmodified 785.47594 0.4759373 234 O43684;O43684-2 BUB3 Mitotic checkpoint protein BUB3 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 2.69 1 1 1 1 2 2 36.516 36.8 2 2.8091E-06 8917 20211116_3436_TMUAki_TMT10x_P_F8 214.7 120.82 5060300 7815800 2992.6 8107100 7009600 7707700 5799300 4795900 4837500 4987300 5926900 4711200 7294000 386570 8244000 6686700 7811300 5916000 5028800 5002000 4862900 5683800 5 5 1 5 5 5 5 5 5 5 5 3102300 4788300 0 5073200 4801900 5929900 3586900 3072400 3211500 3127900 3709000 2888400 4469000 256230 5168200 4572200 5923900 3690300 3269700 3301200 3052600 3562500 2 2 0 2 2 2 2 2 2 2 2 1958000 3027500 2992.6 3033900 2207600 1777800 2212400 1723500 1625900 1859300 2217900 1822800 2825000 130340 3075900 2114600 1887400 2225700 1759100 1700800 1810300 2121200 3 3 1 3 3 3 3 3 3 3 3 490260000 444720000 45543000 11810 234 10964 63074;63075;63076;63077 76504;76505;76506;76507;76508 76505 5 LIVNVNDLR Unmodified 1054.6135 0.61349341 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 0 By MS/MS By MS/MS 6.29 1.03 2 2 2 1 3 4 58.57 58.824 2 5.6371E-06 17436 20211116_3445_TMUAki_TMT10x_S_F6 182.53 112.53 47269000 80020000 338620 83618000 55178000 64055000 48315000 57317000 57017000 55270000 61552000 44011000 74680000 3978400 84757000 52732000 66310000 49636000 58555000 57785000 54064000 59237000 6 6 4 6 6 6 6 6 6 6 6 18370000 29698000 138910 30571000 26951000 38600000 23425000 22114000 21664000 20567000 24017000 17106000 27715000 1772700 31246000 25762000 38458000 23891000 23269000 22200000 20151000 23095000 3 3 3 3 3 3 3 3 3 3 3 28898000 50321000 199700 53046000 28227000 25455000 24889000 35204000 35352000 34703000 37535000 26906000 46965000 2205700 53511000 26970000 27852000 25745000 35286000 35584000 33913000 36141000 3 3 1 3 3 3 3 3 3 3 3 4571800000 2412700000 2159100000 11811 799 10965 63078;63079;63080;63081;63082;63083;63084 76509;76510;76511;76512;76513;76514;76515 76513 7 LIVNVNDLRR Unmodified 1210.7146 0.71460444 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 1 By MS/MS 2 0 2 2 48.16 48.08 3 2.5212E-17 13491 20211116_3440_TMUAki_TMT10x_S_F2 211.86 165.44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11812 799 10966 63085;63086 76516;76517 76516 2 LIYGTVTEDNEEEDDDTLEELGGLFR Unmodified 2971.3458 0.34583673 1728 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 0 0 0 0 By MS/MS 1 0 1 1 81.54 81.54 3 1.8305E-12 26934 20211116_3428_TMUAki_TMT10x_P_F1 114.35 106.46 1224200 1951400 2326.3 1850000 937150 1803100 1219000 711590 738490 913670 1163100 1139900 1820500 99643 1893800 905810 1815200 1206800 784630 787380 884020 1108900 1 1 1 1 1 1 1 1 1 1 1 1224200 1951400 2326.3 1850000 937150 1803100 1219000 711590 738490 913670 1163100 1139900 1820500 99643 1893800 905810 1815200 1206800 784630 787380 884020 1108900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 286620000 286620000 0 11813 1728 10967 63087 76518 76518 1 LKAELGIPLEEVPPEEINYLTR Unmodified 2522.3632 0.36320554 1670 Q13907;Q13907-2 IDI1 Isopentenyl-diphosphate Delta-isomerase 1 yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 77.694 77.674 3 0.0044192 26126 20211116_3442_TMUAki_TMT10x_S_F4 54.869 51.265 5308300 8861600 63462 8472600 7501100 4909200 6753900 3019400 3003300 3551900 5873700 4943000 8267400 529950 8617700 7177500 5178500 6773800 3181300 3321300 3447100 5577300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5308300 8861600 63462 8472600 7501100 4909200 6753900 3019400 3003300 3551900 5873700 4943000 8267400 529950 8617700 7177500 5178500 6773800 3181300 3321300 3447100 5577300 1 1 1 1 1 1 1 1 1 1 1 1176300000 0 1176300000 11814 1670 10968 63088;63089 76519 76519 1 LKAEVEK Unmodified 815.47527 0.4752686 3178 Q9UM00;Q9UM00-1;Q9UM00-2 TMCO1 Transmembrane and coiled-coil domain-containing protein 1 yes no 0 0 0 1 By MS/MS 5 0 1 1 35.309 35.484 3 0.075497 7700 20211116_3444_TMUAki_TMT10x_S_F5 44.82 2.9443 1924100 3434600 8752.3 2779000 2180300 1729500 2262700 1315400 1476800 1412700 2101400 1791600 3202400 171270 2865600 2093100 1817300 2266500 1361200 1558900 1375700 2007800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1924100 3434600 8752.3 2779000 2180300 1729500 2262700 1315400 1476800 1412700 2101400 1791600 3202400 171270 2865600 2093100 1817300 2266500 1361200 1558900 1375700 2007800 1 1 1 1 1 1 1 1 1 1 1 63681000 0 63681000 11815 3178 10969 63090 76520 76520 1 LKDAEKPVLFFER Unmodified 1590.877 0.87697832 830 P27707 DCK Deoxycytidine kinase yes yes 0 0 0 2 By MS/MS By MS/MS 8 0 2 1 1 58.22 58.291 4 0.0066945 17463 20211116_3436_TMUAki_TMT10x_P_F8 62.445 46.308 25416000 44066000 290210 41372000 40798000 52814000 30641000 38995000 34521000 33598000 36032000 23667000 41108000 2588400 42568000 38881000 52787000 31732000 40184000 35003000 33036000 34712000 4 4 3 4 4 4 4 4 4 4 4 16287000 27800000 203870 25750000 30743000 43960000 23012000 24931000 21764000 21243000 22916000 15167000 25933000 1742800 26687000 29296000 43233000 23708000 26198000 22236000 20899000 22071000 2 2 2 2 2 2 2 2 2 2 2 9128900 16265000 86336 15622000 10055000 8853800 7629000 14064000 12758000 12356000 13116000 8500500 15175000 845570 15881000 9585500 9554200 8024000 13985000 12767000 12138000 12641000 2 2 1 2 2 2 2 2 2 2 2 1260500000 638540000 621940000 11816 830 10970 63091;63092 76521;76522;76523;76524 76522 4 LKDDEVAQLK Unmodified 1157.6292 0.62920306 531 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 1 By MS/MS By MS/MS 4.86 0.833 3 2 2 4 3 45.271 45.424 3 1.3496E-05 12513 20211116_3431_TMUAki_TMT10x_P_F4 103.75 59.434 17415000 28378000 42868 31653000 27089000 21370000 17717000 13734000 16079000 13402000 22081000 16215000 26492000 1611900 31906000 25741000 22233000 18411000 14339000 16642000 13103000 21115000 3 3 2 3 3 3 3 3 3 3 3 7663400 12012000 6253 12344000 18811000 14862000 8903000 6176500 7364700 6287300 9518200 7135500 11210000 797300 12607000 17788000 14790000 9501100 6721500 7636000 6135900 9115200 1 1 1 1 1 1 1 1 1 1 1 9751300 16365000 36615 19309000 8278300 6508000 8814300 7557400 8713800 7115100 12563000 9079700 15282000 814550 19299000 7952900 7443100 8909600 7617700 9005800 6967200 11999000 2 2 1 2 2 2 2 2 2 2 2 1134300000 616060000 518200000 11817 531 10971 63093;63094;63095;63096;63097;63098;63099 76525;76526;76527;76528;76529;76530;76531 76525 7 LKDDEVAQLKK Unmodified 1285.7242 0.72416608 531 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 2 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 42.752 43.027 4 8.4925E-06 10988 20211116_3445_TMUAki_TMT10x_S_F6 117.07 89.103 30829000 47752000 349570 45709000 48632000 44765000 35675000 30606000 30309000 25451000 37482000 28707000 44550000 3040500 46761000 46320000 45344000 36698000 31679000 31324000 25070000 35935000 8 8 6 8 8 8 8 8 8 8 8 20546000 31142000 228070 30104000 37500000 35662000 23405000 20502000 20281000 16984000 24935000 19132000 29055000 2071600 30868000 35611000 35647000 24381000 21505000 20935000 16733000 23910000 4 4 3 4 4 4 4 4 4 4 4 10283000 16610000 121510 15605000 11132000 9103000 12270000 10104000 10028000 8467200 12547000 9574900 15495000 968920 15893000 10710000 9697000 12317000 10173000 10389000 8336900 12026000 4 4 3 4 4 4 4 4 4 4 4 2711300000 2167900000 543430000 11818 531 10972 63100;63101;63102;63103;63104 76532;76533;76534;76535;76536;76537;76538;76539 76537 8 LKDISTLEPLK Unmodified 1255.7388 0.73875351 2357 Q92688;Q92688-2 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B yes no 0 0 0 1 By MS/MS 8 0 1 1 58.332 58.497 3 1.322E-05 17555 20211116_3436_TMUAki_TMT10x_P_F8 103.76 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11819 2357 10973 63105 76540 76540 1 LKDIVSLVPR Unmodified 1138.7074 0.7073938 437 O95573 ACSL3 Long-chain-fatty-acid--CoA ligase 3 yes yes 0 0 0 1 By MS/MS 3 0 1 1 64.494 64.043 3 6.0433E-05 22879 20211116_3441_TMUAki_TMT10x_S_F3 93.623 61.013 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11820 437 10974 63106 76541 76541 1 LKDLYIRPNIAQK Unmodified 1570.9195 0.91951184 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 0 2 By MS/MS By MS/MS 4 0 2 1 1 50.627 50.761 4 4.3894E-12 15154 20211116_3442_TMUAki_TMT10x_S_F4 157.43 133.08 9953200 17496000 79343 14325000 22696000 24815000 13355000 28886000 28412000 22379000 21073000 9267800 16313000 1054200 14995000 21530000 24725000 14501000 28969000 27985000 22125000 20555000 4 4 3 4 4 4 4 4 4 4 4 5069800 7978500 35188 6769900 16725000 19594000 9300700 12078000 12468000 9896200 9594800 4720600 7440300 592960 7183500 15851000 19001000 9920400 12594000 12443000 9755000 9344700 2 2 1 2 2 2 2 2 2 2 2 4883400 9517100 44155 7555200 5970100 5221200 4053900 16808000 15944000 12483000 11478000 4547300 8873100 461240 7811200 5678900 5723400 4580300 16375000 15542000 12370000 11210000 2 2 2 2 2 2 2 2 2 2 2 742910000 393340000 349570000 11821 3317 10975 63107;63108 76542;76543;76544;76545 76544 4 LKDPANFQYPAESVLAYK Unmodified 2053.052 0.052042156 685 P15559;P15559-3;P15559-2 NQO1 NAD(P)H dehydrogenase [quinone] 1 yes no 0 0 0 1 By MS/MS 4.5 3.5 1 1 2 69.525 69.566 3 1.0653E-06 22116 20211116_3436_TMUAki_TMT10x_P_F8 87.676 70.597 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11822 685 10976 63109;63110 76546;76547 76547 2 LKDPEKGPVPTFQPFQR Unmodified 1983.0578 0.057796235 720 P18615;P18615-3;P18615-4 NELFE Negative elongation factor E yes no 0 0 0 2 By MS/MS By MS/MS 2 0 2 1 1 53.962 53.738 4 4.4609E-05 17070 20211116_3429_TMUAki_TMT10x_P_F2 84.436 65.113 16798000 28032000 749070 23305000 21613000 27926000 18701000 34347000 28589000 27934000 29901000 15646000 26139000 2123300 24178000 20693000 28309000 19428000 34405000 28698000 27546000 28804000 2 2 1 2 2 2 2 2 2 2 2 6514500 8565400 0 7796700 10144000 15909000 8519400 11694000 10024000 9168100 12041000 6065300 7989600 556040 8129600 9683000 15612000 8773100 12027000 10204000 9058200 11553000 1 1 0 1 1 1 1 1 1 1 1 10283000 19467000 749070 15508000 11469000 12017000 10182000 22652000 18565000 18766000 17860000 9580500 18150000 1567300 16048000 11010000 12697000 10655000 22378000 18495000 18488000 17251000 1 1 1 1 1 1 1 1 1 1 1 1366800000 704420000 662340000 11823 720 10977 63111;63112 76548;76549 76548 2 LKDQNIFVSR Unmodified 1218.6721 0.67207093 2983 Q9NW13;Q9NW13-2 RBM28 RNA-binding protein 28 yes no 0 0 0 1 By MS/MS 1 0 1 1 44.779 44.568 3 0.0016826 13870 20211116_3439_TMUAki_TMT10x_S_F1 80.312 45.925 1179200 1768800 62654 2539800 1101100 1029700 1116300 1912900 1917300 1465400 2077500 1098500 1653300 155060 2513900 1059900 1161900 1156300 1887000 1921100 1449600 1999100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1179200 1768800 62654 2539800 1101100 1029700 1116300 1912900 1917300 1465400 2077500 1098500 1653300 155060 2513900 1059900 1161900 1156300 1887000 1921100 1449600 1999100 1 1 1 1 1 1 1 1 1 1 1 57033000 0 57033000 11824 2983 10978 63113 76550 76550 1 LKDYAFIHFDER Unmodified 1552.7674 0.76742787 271;272 O60506;O60506-2;O60506-3;O60506-4;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 1 By MS/MS By MS/MS 6.25 0.829 1 1 2 2 2 55.739 56.12 4 9.3354E-06 17733 20211116_3435_TMUAki_TMT10x_P_F7 104.55 90.586 7309200 13899000 70607 9865500 11468000 15892000 10107000 14079000 14803000 14922000 11803000 6805900 12954000 711390 10439000 10965000 15777000 10469000 14431000 14748000 14539000 11479000 4 4 2 4 4 4 4 4 4 4 4 3418700 5858200 24430 4772400 6719800 10108000 5458200 6023900 6363400 6513100 5048800 3183400 5462300 352240 5025100 6413000 9876200 5630400 6345400 6387400 6340900 4911100 2 2 1 2 2 2 2 2 2 2 2 3890500 8040400 46178 5093100 4748300 5784500 4648900 8055100 8439800 8409200 6754600 3622600 7491600 359150 5414300 4552000 5901200 4838200 8085800 8360400 8198300 6568100 2 2 1 2 2 2 2 2 2 2 2 2389900000 1042200000 1347700000 11825 271;272 10979 63114;63115;63116;63117 76551;76552;76553;76554 76552 4 LKDYAFIHFDERDGAVK Unmodified 2023.0163 0.016325351 271;272 O60506;O60506-2;O60506-3;O60506-4;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 2 By MS/MS By MS/MS 7.2 0.748 1 2 2 2 3 55.216 55.498 5 1.5058E-21 16337 20211116_3436_TMUAki_TMT10x_P_F8 170.19 153.7 12789000 24782000 222820 13848000 28260000 50206000 22143000 47147000 39762000 34128000 26953000 11909000 23083000 1456700 15443000 26955000 48835000 23325000 47701000 39225000 33867000 26397000 4 4 2 4 4 4 4 4 4 4 4 7821400 15616000 222820 8202100 21006000 42738000 17475000 31345000 26159000 22688000 17388000 7284100 14544000 1040800 9407600 20066000 41153000 18179000 32185000 25921000 22515000 17045000 2 2 2 2 2 2 2 2 2 2 2 4967300 9165600 0 5645500 7254000 7468200 4667200 15802000 13603000 11440000 9564200 4624900 8539300 415930 6035200 6888600 7683000 5146100 15515000 13305000 11353000 9351300 2 2 0 2 2 2 2 2 2 2 2 6409800000 3056800000 3353000000 11826 271;272 10980 63118;63119;63120;63121;63122 76555;76556;76557;76558 76556 4 LKDYAFVHFEDR Unmodified 1538.7518 0.75177781 211 O43390;O43390-2;O43390-3;O43390-4 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 1 By MS/MS By MS/MS 6.29 1.03 4 4 4 2 7 7 52.894 53.157 3;4 6.4902E-09 16500 20211116_3435_TMUAki_TMT10x_P_F7 147.35 124.34 44194000 82493000 296160 58588000 88076000 126210000 68388000 111980000 106170000 99613000 82722000 41150000 76886000 4355900 62469000 83961000 124080000 71568000 114200000 105530000 97797000 80525000 17 17 12 17 17 17 17 17 17 17 17 27675000 47984000 197360 35805000 62884000 99771000 50172000 66563000 63512000 58592000 48238000 25768000 44729000 2833900 38344000 59980000 96948000 51969000 69114000 63486000 57553000 47006000 11 11 7 11 11 11 11 11 11 11 11 16520000 34509000 98799 22782000 25192000 26439000 18216000 45420000 42661000 41021000 34484000 15382000 32157000 1522000 24125000 23982000 27135000 19599000 45090000 42040000 40244000 33518000 6 6 5 6 6 6 6 6 6 6 6 12400000000 6267900000 6132200000 11827 211 10981 63123;63124;63125;63126;63127;63128;63129;63130;63131;63132;63133;63134;63135;63136 76559;76560;76561;76562;76563;76564;76565;76566;76567;76568;76569;76570;76571;76572;76573;76574;76575;76576 76566 18 LKEAELLEPLMPAIR Oxidation (M) 1737.9699 0.96989243 1206 P53618 COPB1 Coatomer subunit beta yes yes 0 0 1 1 By MS/MS By MS/MS 6 0 2 1 1 65.475 65.451 3 0.01498 20263 20211116_3445_TMUAki_TMT10x_S_F6 53.777 33.114 12378000 21601000 521800 18977000 14157000 20720000 15001000 17018000 14794000 17235000 17373000 11529000 20146000 1537400 19571000 13627000 20918000 15166000 17496000 15151000 16823000 16680000 4 4 4 4 4 4 4 4 4 4 4 6479200 10658000 173730 9725100 7155600 13305000 8200100 8474900 7366500 8045100 8342000 6034100 9941900 708560 10041000 6897900 13224000 8237300 8847500 7565200 7875000 8017000 2 2 2 2 2 2 2 2 2 2 2 5898600 10943000 348070 9252300 7001400 7415700 6801100 8542600 7427400 9189600 9031400 5494800 10204000 828870 9530800 6729400 7693200 6928600 8648100 7585600 8948400 8662600 2 2 2 2 2 2 2 2 2 2 2 1148700000 531450000 617220000 11828 1206 10982 63137;63138 76577;76578;76579;76580 76580 1615 4 LKEAELLEPLMPAIR Unmodified 1721.975 0.97497781 1206 P53618 COPB1 Coatomer subunit beta yes yes 0 0 0 1 By MS/MS 7 0 1 1 75.984 76.091 3 0.018253 26592 20211116_3446_TMUAki_TMT10x_S_F7 49.924 30.346 8211500 14245000 0 10878000 10792000 8856700 10181000 7309000 6206600 7176100 9477300 7644900 13280000 611840 11305000 10326000 9112500 10236000 7505400 6604200 7014100 9041200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8211500 14245000 0 10878000 10792000 8856700 10181000 7309000 6206600 7176100 9477300 7644900 13280000 611840 11305000 10326000 9112500 10236000 7505400 6604200 7014100 9041200 1 1 0 1 1 1 1 1 1 1 1 574520000 0 574520000 11829 1206 10982 63139 76581 76581 1 LKEEIEVMAK Oxidation (M) 1204.6373 0.6373249 363 O75844 ZMPSTE24 CAAX prenyl protease 1 homolog yes yes 0 0 1 1 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 46.3 46.474 3 0.0057919 13201 20211116_3433_TMUAki_TMT10x_P_F5 67.776 43.394 4521500 7141300 0 6956300 6128900 8327400 4795500 7071300 6305200 7026600 6098400 4209600 6662900 353000 7130100 5840300 8370600 4980700 7251700 6341000 6864400 5889300 2 2 0 2 2 2 2 2 2 2 2 2939800 4430100 0 4426200 4417800 6586600 3346200 4606500 4192300 4773100 3956000 2737300 4133700 263840 4548000 4209000 6532200 3476400 4788500 4219500 4654800 3823500 1 1 0 1 1 1 1 1 1 1 1 1581700 2711200 0 2530100 1711100 1740800 1449200 2464900 2112900 2253400 2142300 1472400 2529100 89156 2582100 1631300 1838400 1504300 2463200 2121500 2209500 2065700 1 1 0 1 1 1 1 1 1 1 1 628750000 339290000 289460000 11830 363 10983 63140;63141;63142 76582;76583;76584 76582 282 3 LKEEISK Unmodified 845.48583 0.48583328 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 37.746 37.789 3 0.054561 8732 20211116_3444_TMUAki_TMT10x_S_F5 53.751 5.1113 2274900 3475400 27428 3193400 2261800 2238100 2597100 1502500 1640800 1833900 2391200 2118300 3241800 213250 3263400 2178800 2322400 2587200 1574600 1737700 1777400 2283500 2 2 1 2 2 2 2 2 2 2 2 487940 667690 0 663120 624070 671750 495580 277190 328770 326180 504020 454310 623010 41625 676940 595110 674930 504240 303200 347980 316540 480790 1 1 0 1 1 1 1 1 1 1 1 1786900 2807700 27428 2530300 1637800 1566300 2101500 1225300 1312100 1507700 1887200 1664000 2618800 171620 2586500 1583700 1647500 2082900 1271400 1389700 1460900 1802700 1 1 1 1 1 1 1 1 1 1 1 364240000 116120000 248120000 11831 972 10984 63143;63144;63145 76585;76586 76586 2 LKEELEEARDIAR Unmodified 1570.8315 0.83148469 1511 Q04637;Q04637-3;Q04637-8;Q04637-5;Q04637-4;Q04637-9;Q04637-6;Q04637-7 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 2 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 51.545 51.361 4 4.6929E-09 16124 20211116_3429_TMUAki_TMT10x_P_F2 130.47 97.734 4008500 6153300 85397 7244400 7729500 8021100 4441100 6253000 6083100 5336800 5643900 3732900 5745700 464030 7325000 7333900 8083700 4727600 6419500 6101000 5249900 5458100 3 3 3 3 3 3 3 3 3 3 3 2762100 4208800 45285 5039300 6441800 6987600 3504100 4341700 4184800 3666600 3888700 2572100 3930300 322740 5111300 6105600 6938800 3729000 4527600 4217100 3608800 3760400 2 2 2 2 2 2 2 2 2 2 2 1246400 1944500 40113 2205100 1287700 1033500 937030 1911400 1898200 1670200 1755200 1160800 1815400 141300 2213700 1228300 1144900 998560 1891800 1884000 1641200 1697600 1 1 1 1 1 1 1 1 1 1 1 913960000 558040000 355920000 11832 1511 10985 63146;63147;63148;63149;63150 76587;76588;76589 76587 3 LKEENFFGPK Unmodified 1207.6237 0.62372375 3032 Q9NZI8;Q9NZI8-2 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 52.241 52.595 3 0.00098662 16882 20211116_3446_TMUAki_TMT10x_S_F7 83.314 66.682 79984000 123060000 421550 180760000 132260000 120060000 85921000 109760000 120160000 99868000 115630000 74468000 115050000 6720500 179420000 125610000 125820000 90636000 111820000 120590000 97944000 111680000 4 4 3 4 4 4 4 4 4 4 4 35155000 56131000 130930 76760000 105470000 89503000 53122000 49169000 50805000 44677000 47954000 32734000 52454000 4021500 77041000 99824000 89487000 56549000 51893000 51685000 43819000 46348000 2 2 2 2 2 2 2 2 2 2 2 44829000 66933000 290630 104000000 26788000 30555000 32799000 60595000 69359000 55191000 67672000 41734000 62594000 2699100 102380000 25787000 36332000 34087000 59931000 68901000 54125000 65333000 2 2 1 2 2 2 2 2 2 2 2 4764700000 2874200000 1890400000 11833 3032 10986 63151;63152;63153;63154 76590;76591;76592;76593 76593 4 LKEENFFGPKEEVK Unmodified 1692.8723 0.87228688 3032 Q9NZI8;Q9NZI8-2 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes no 0 0 0 2 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 50.914 51.235 4 2.6468E-09 16331 20211116_3446_TMUAki_TMT10x_S_F7 133.86 96.681 54097000 86932000 638930 106890000 95584000 90096000 51157000 98545000 107100000 86727000 90927000 50373000 81192000 5516200 107380000 90563000 93009000 55946000 99413000 105940000 85189000 88215000 7 7 6 7 7 7 7 7 7 7 7 21463000 33673000 205650 40646000 72327000 64035000 31345000 37891000 40749000 32687000 34860000 19986000 31446000 2683500 41322000 68333000 63204000 34228000 39688000 40835000 32139000 33811000 3 3 3 3 3 3 3 3 3 3 3 32634000 53259000 433280 66240000 23257000 26061000 19812000 60654000 66355000 54040000 56067000 30387000 49745000 2832700 66058000 22230000 29805000 21717000 59725000 65103000 53050000 54404000 4 4 3 4 4 4 4 4 4 4 4 4205000000 2640100000 1564900000 11834 3032 10987 63155;63156;63157;63158;63159 76594;76595;76596;76597;76598;76599;76600 76600 7 LKEEYQSLIR Unmodified 1277.698 0.69795133 3275 Q9Y3C8 UFC1 Ubiquitin-fold modifier-conjugating enzyme 1 yes yes 0 0 0 1 By MS/MS By matching 7 0 2 1 1 50.422 50.991 3 0.00095673 15719 20211116_3435_TMUAki_TMT10x_P_F7 84.169 52.747 2797200 4569100 3099.3 5282800 6411500 6577000 3984400 3657200 3852300 3311800 3827000 2604500 4266100 285420 5358300 6086800 6554800 4164400 3855500 3923900 3248700 3692600 1 1 1 1 1 1 1 1 1 1 1 2797200 4569100 3099.3 5282800 6411500 6577000 3984400 3657200 3852300 3311800 3827000 2604500 4266100 285420 5358300 6086800 6554800 4164400 3855500 3923900 3248700 3692600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 468310000 270560000 197750000 11835 3275 10988 63160;63161 76601 76601 1 LKEGDTIIVPGVEGPIVTQIR Unmodified 2233.2682 0.26818294 295 O60841 EIF5B Eukaryotic translation initiation factor 5B yes yes 0 0 0 1 By MS/MS By MS/MS 7 0.707 1 2 1 2 2 70.479 70.69 3 1.6323E-10 24292 20211116_3446_TMUAki_TMT10x_S_F7 116.45 101.2 15065000 26535000 85282 22908000 19019000 25306000 18986000 19222000 18025000 19045000 19894000 14027000 24746000 1364700 23662000 18239000 25496000 19230000 19846000 18446000 18608000 19133000 5 5 3 5 5 5 5 5 5 5 5 7344200 11851000 10640 10591000 7745500 14895000 9298600 8857000 8302500 8592600 8779000 6838100 11053000 609610 10957000 7465500 14772000 9319900 9302000 8506800 8402800 8454000 2 2 1 2 2 2 2 2 2 2 2 7720800 14684000 74642 12318000 11273000 10412000 9687000 10365000 9722400 10453000 11115000 7189400 13693000 755110 12705000 10774000 10723000 9910000 10544000 9938800 10205000 10679000 3 3 2 3 3 3 3 3 3 3 3 3948400000 1455900000 2492500000 11836 295 10989 63162;63163;63164;63165 76602;76603;76604;76605;76606;76607 76607 6 LKENLYPYLGPSTLR Unmodified 1762.9618 0.96177059 2934 Q9NRW7;Q9NRW7-2 VPS45 Vacuolar protein sorting-associated protein 45 yes no 0 0 0 1 By MS/MS 3 0 1 1 62.386 61.951 3 0.0059908 22037 20211116_3441_TMUAki_TMT10x_S_F3 59.728 40.15 4940200 10461000 0 6178600 7302000 6997300 8475000 7353600 7712300 8352500 8866400 4599300 9745200 373730 6617900 7026500 7085900 8511600 7488500 7920300 8116400 8517400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4940200 10461000 0 6178600 7302000 6997300 8475000 7353600 7712300 8352500 8866400 4599300 9745200 373730 6617900 7026500 7085900 8511600 7488500 7920300 8116400 8517400 1 1 0 1 1 1 1 1 1 1 1 334870000 0 334870000 11837 2934 10990 63166 76608 76608 1 LKESGAINTSLFVLGK Unmodified 1675.9509 0.95087155 1734 Q14807;Q14807-2 KIF22 Kinesin-like protein KIF22 yes no 0 0 0 1 By MS/MS By MS/MS 3 0 2 1 1 69.688 69.247 3 3.07E-06 23951 20211116_3430_TMUAki_TMT10x_P_F3 89.866 60.853 4101500 7765200 31780 6060300 5180300 5186700 5085400 6079000 5765900 5924800 6309500 3819100 7239400 384770 6289800 4966600 5357800 5184400 6131100 5855300 5792800 6069700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4101500 7765200 31780 6060300 5180300 5186700 5085400 6079000 5765900 5924800 6309500 3819100 7239400 384770 6289800 4966600 5357800 5184400 6131100 5855300 5792800 6069700 2 2 2 2 2 2 2 2 2 2 2 220120000 0 220120000 11838 1734 10991 63167;63168 76609;76610;76611 76609 3 LKETEPVEAYVIQK Unmodified 1645.8927 0.89268797 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 56.17 56.245 3 3.6311E-19 15980 20211116_3434_TMUAki_TMT10x_P_F6 171.76 143.44 15701000 25154000 226910 29558000 26482000 28448000 17050000 16635000 19131000 16348000 19701000 14621000 23487000 1659500 29826000 25169000 28784000 17853000 17501000 19391000 15978000 18987000 4 4 3 4 4 4 4 4 4 4 4 12697000 19890000 178830 23640000 24005000 26196000 14964000 13230000 15174000 12741000 15537000 11823000 18573000 1373000 23890000 22800000 26238000 15658000 14091000 15440000 12463000 14977000 3 3 2 3 3 3 3 3 3 3 3 3004600 5264100 48082 5917700 2477100 2252300 2086700 3405400 3956900 3607200 4163500 2798000 4914400 286530 5936000 2368200 2546500 2195000 3410200 3950900 3514700 4009900 1 1 1 1 1 1 1 1 1 1 1 1585500000 910110000 675360000 11839 1057 10992 63169;63170 76612;76613;76614;76615 76612 4 LKETIDNNSVSSPLQSLQQR Unmodified 2256.171 0.17098809 1272 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E yes yes 0 0 0 1 By MS/MS By MS/MS 7.4 0.49 3 2 2 3 56.482 56.824 3 2.3789E-41 16332 20211116_3447_TMUAki_TMT10x_S_F8 202.51 190.03 18159000 35844000 151420 35551000 29040000 32725000 21399000 28188000 22903000 23233000 27047000 16908000 33445000 1755100 36246000 27660000 33411000 22152000 28740000 23381000 22895000 25963000 8 8 5 8 8 8 8 8 8 8 8 8510100 16119000 121810 15941000 18733000 24948000 14179000 12995000 10565000 10681000 12091000 7924400 15040000 926900 16410000 17853000 24591000 14509000 13746000 10961000 10527000 11616000 4 4 3 4 4 4 4 4 4 4 4 9648600 19725000 29615 19610000 10307000 7777400 7219700 15193000 12337000 12552000 14956000 8984000 18405000 828200 19836000 9806600 8819600 7643100 14994000 12420000 12368000 14346000 4 4 2 4 4 4 4 4 4 4 4 4461000000 2584100000 1877000000 11840 1272 10993 63171;63172;63173;63174;63175 76616;76617;76618;76619;76620;76621;76622;76623;76624 76623 9 LKEVLEYNAIGGK Unmodified 1432.7926 0.79257999 667 P14324;P14324-2 FDPS Farnesyl pyrophosphate synthase yes no 0 0 0 1 By MS/MS By MS/MS 7.33 0.745 1 2 3 4 2 61.507 61.856 2;3 2.7861E-21 18971 20211116_3436_TMUAki_TMT10x_P_F8 165.7 120.54 47868000 75804000 635420 66651000 81076000 87874000 56032000 79897000 72909000 70234000 69542000 44574000 70699000 4992100 68959000 77146000 88032000 58668000 81347000 73314000 68993000 67189000 4 4 3 4 4 4 4 4 4 4 4 29659000 44833000 162450 38766000 56818000 68152000 37451000 49002000 44375000 42596000 41494000 27617000 41812000 2956900 40415000 54000000 67186000 39215000 50597000 44739000 41865000 40117000 2 2 1 2 2 2 2 2 2 2 2 18209000 30970000 472970 27886000 24258000 19722000 18581000 30895000 28534000 27638000 28048000 16958000 28887000 2035200 28544000 23146000 20846000 19453000 30751000 28575000 27127000 27072000 2 2 2 2 2 2 2 2 2 2 2 7765300000 4823700000 2941500000 11841 667 10994 63176;63177;63178;63179;63180;63181 76625;76626;76627;76628;76629;76630 76628 6 LKFPIDYPYSPPAFR Unmodified 1809.9454 0.94539224 1099 P49427 CDC34 Ubiquitin-conjugating enzyme E2 R1 yes yes 0 0 0 1 By MS/MS 3.5 0.5 1 1 2 72.611 72.665 3 2.4599E-06 25354 20211116_3430_TMUAki_TMT10x_P_F3 90.754 75.723 47742000 73402000 0 78031000 49137000 65923000 45793000 31568000 31467000 33137000 51038000 44448000 68509000 3332700 79096000 46989000 67133000 46182000 33877000 33334000 32299000 48629000 3 3 0 3 3 3 3 3 3 3 3 47742000 73402000 0 78031000 49137000 65923000 45793000 31568000 31467000 33137000 51038000 44448000 68509000 3332700 79096000 46989000 67133000 46182000 33877000 33334000 32299000 48629000 3 3 0 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2566800000 2566800000 0 11842 1099 10995 63182;63183 76631;76632;76633;76634 76631 4 LKGDDLQAIKK Unmodified 1227.7187 0.71868677 545 P07910-2;P07910;P07910-3 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 0 0 0 2 By MS/MS By MS/MS 7.14 0.639 1 4 2 2 5 43.104 43.434 3;4 8.5346E-05 11471 20211116_3436_TMUAki_TMT10x_P_F8 100.19 62.166 40713000 65769000 388210 64569000 68112000 64528000 50475000 41517000 47528000 39290000 51474000 37908000 61365000 3755900 65955000 64866000 65223000 52030000 43306000 48620000 38464000 49532000 9 9 8 9 9 9 9 9 9 9 9 28733000 45313000 57011 45133000 57396000 52602000 35833000 27357000 32948000 26318000 35257000 26750000 42281000 2471700 46167000 54471000 52559000 37385000 29058000 33727000 25746000 33940000 3 3 2 3 3 3 3 3 3 3 3 11981000 20456000 331200 19436000 10716000 11927000 14643000 14159000 14580000 12972000 16216000 11158000 19084000 1284200 19788000 10394000 12664000 14645000 14248000 14893000 12718000 15593000 6 6 6 6 6 6 6 6 6 6 6 3080600000 2007900000 1072700000 11843 545 10996 63184;63185;63186;63187;63188;63189;63190 76635;76636;76637;76638;76639;76640;76641;76642;76643;76644 76637 10 LKGEATVSFDDPPSAK Unmodified 1660.8308 0.83081599 940 P35637;P35637-2 FUS RNA-binding protein FUS yes no 0 0 0 1 By MS/MS By MS/MS 5.23 1.51 1 2 4 5 5 4 1 13 9 48.882 49.078 2;3;4 1.5467E-19 14226 20211116_3433_TMUAki_TMT10x_P_F5 174.72 143.08 253280000 391870000 3564300 389760000 315880000 349170000 285800000 293890000 282290000 289200000 314040000 235850000 365650000 24217000 397160000 302280000 356970000 291360000 301460000 288470000 282640000 301960000 30 30 15 30 30 30 30 30 30 30 30 105480000 158340000 892750 157860000 146460000 196780000 115140000 119970000 116910000 116110000 127850000 98215000 147750000 9401200 161660000 139650000 196340000 118480000 125740000 119250000 113560000 122990000 16 16 8 16 16 16 16 16 16 16 16 147800000 233530000 2671600 231900000 169420000 152390000 170660000 173920000 165380000 173090000 186190000 137630000 217900000 14815000 235500000 162630000 160630000 172880000 175720000 169210000 169080000 178970000 14 14 7 14 14 14 14 14 14 14 14 74617000000 36747000000 37870000000 11844 940 10997 63191;63192;63193;63194;63195;63196;63197;63198;63199;63200;63201;63202;63203;63204;63205;63206;63207;63208;63209;63210;63211;63212 76645;76646;76647;76648;76649;76650;76651;76652;76653;76654;76655;76656;76657;76658;76659;76660;76661;76662;76663;76664;76665;76666;76667;76668;76669;76670;76671;76672;76673;76674;76675;76676 76653 32 LKGEMMDLQHGSLFLQTPK Oxidation (M) 2188.102 0.10204559 531 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 1 1 By MS/MS By matching 3 0 2 1 1 58.844 58.515 4 9.4611E-05 19589 20211116_3430_TMUAki_TMT10x_P_F3 76.027 61.257 2992600 3959400 38677 4368500 4005600 5196200 3287000 3035400 2873200 2658500 3187500 2786700 3696100 298340 4440100 3825100 5193900 3358900 3184000 2952300 2612000 3065100 1 1 1 1 1 1 1 1 1 1 1 2992600 3959400 38677 4368500 4005600 5196200 3287000 3035400 2873200 2658500 3187500 2786700 3696100 298340 4440100 3825100 5193900 3358900 3184000 2952300 2612000 3065100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1174300000 622400000 551940000 11845 531 10998 63213;63214 76677 76677 454 1 LKGEMMDLQHGSLFLR Oxidation (M) 1889.9492 0.94917376 462 P00338;P00338-3;P00338-4;P00338-2;P00338-5 LDHA L-lactate dehydrogenase A chain yes no 0 0 1 1 By MS/MS 3 0 1 1 58.603 58.193 4 0.012781 20470 20211116_3441_TMUAki_TMT10x_S_F3 52.481 28.44 2519100 3731700 0 4113400 2134200 1772200 2036300 1813200 1810700 2054000 2787800 2345300 3483500 171370 4134400 2041900 1950800 2063600 1848700 1886600 1996100 2659000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2519100 3731700 0 4113400 2134200 1772200 2036300 1813200 1810700 2054000 2787800 2345300 3483500 171370 4134400 2041900 1950800 2063600 1848700 1886600 1996100 2659000 1 1 0 1 1 1 1 1 1 1 1 252580000 0 252580000 11846 462 10999 63215 76678 76678 341;342 1 LKGIEEEEILPGFILCDPNNLCHSGR Unmodified 3009.4688 0.46882637 681 P15170-3;P15170-2;P15170 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 0 0 0 1 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 76.249 76.244 4 3.82E-17 25378 20211116_3433_TMUAki_TMT10x_P_F5 124.1 120.87 8072000 12727000 79659 11907000 9511100 11435000 8760700 9041900 7391900 8349200 9632100 7515400 11872000 627930 12198000 9096800 11624000 8883200 9293200 7659400 8182800 9222400 4 4 2 4 4 4 4 4 4 4 4 3755800 5419800 50986 4962100 3453500 6743500 4049800 3814800 3234200 3315700 4164900 3497300 5055600 344230 5121100 3328800 6694100 4051500 4011500 3358900 3258800 3988900 2 2 1 2 2 2 2 2 2 2 2 4316200 7306800 28673 6945000 6057600 4691100 4710800 5227100 4157800 5033600 5467200 4018000 6816700 283710 7076900 5768000 4930100 4831700 5281700 4300500 4924000 5233500 2 2 1 2 2 2 2 2 2 2 2 2680400000 1637800000 1042600000 11847 681 11000 63216;63217;63218;63219;63220 76679;76680;76681;76682 76679 4 LKGPQITGPSLEGDLGLK Unmodified 1822.02 0.020013746 1555 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 3 1 2 64.836 64.908 3 4.4842E-12 19650 20211116_3447_TMUAki_TMT10x_S_F8 131.11 92.603 10069000 17027000 9326.4 16370000 12375000 17635000 12956000 14263000 13761000 13737000 14085000 9374900 15886000 848830 16765000 11879000 17811000 13137000 14656000 13976000 13438000 13577000 3 3 2 3 3 3 3 3 3 3 3 6013900 10446000 6778.5 10321000 7394800 13099000 8393100 8462200 8345200 8525400 8557300 5599400 9746900 497330 10579000 7114300 13068000 8459800 8839600 8499500 8323800 8248300 2 2 1 2 2 2 2 2 2 2 2 4054900 6581100 2548 6049200 4979800 4536200 4563100 5800400 5415700 5211800 5527300 3775500 6138900 351510 6186100 4764600 4743000 4676700 5816000 5476200 5114400 5328500 1 1 1 1 1 1 1 1 1 1 1 1150300000 581480000 568820000 11848 1555 11001 63221;63222;63223 76683;76684;76685;76686 76685 4 LKGSGNLEAIHIIK Unmodified 1491.8773 0.87731267 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 1 By MS/MS By MS/MS 2.8 2.64 2 2 1 3 2 50.818 50.699 4 2.478E-06 14430 20211116_3436_TMUAki_TMT10x_P_F8 112.84 79.893 13985000 22435000 22900 22748000 28967000 28863000 17156000 20610000 21973000 20248000 20595000 13020000 20936000 1195800 23276000 27467000 28841000 18169000 21360000 22094000 19791000 19910000 7 7 1 7 7 7 7 7 7 7 7 10397000 16252000 0 16420000 26145000 25219000 13820000 15081000 15618000 14928000 14867000 9679100 15166000 891800 16871000 24747000 24921000 14719000 15840000 15783000 14586000 14365000 5 5 0 5 5 5 5 5 5 5 5 3587800 6183400 22900 6328400 2821400 3644200 3335500 5529300 6354900 5320400 5728100 3340800 5770300 304010 6405700 2719400 3920400 3450000 5520400 6310700 5204700 5545100 2 2 1 2 2 2 2 2 2 2 2 3090700000 2242900000 847830000 11849 1429 11002 63224;63225;63226;63227;63228 76687;76688;76689;76690;76691;76692;76693 76690 7 LKGSGNLEAIHIIKK Unmodified 1619.9723 0.97227569 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 2 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 47.499 47.432 5 5.1594E-05 15012 20211116_3430_TMUAki_TMT10x_P_F3 95.347 89.316 3122600 4424700 35063 4764600 5110500 5192400 3381500 4113700 4739600 4072400 4373800 2907600 4130000 310540 4843100 4858300 5239000 3562400 4235700 4749300 3979000 4230600 2 2 1 2 2 2 2 2 2 2 2 1502400 2015100 0 2310700 3620400 3451400 1782200 1861400 2160800 1874600 1940000 1398800 1881500 145360 2353500 3424600 3409900 1915600 1973200 2173800 1830300 1878300 1 1 0 1 1 1 1 1 1 1 1 1620200 2409500 35063 2453900 1490200 1741000 1599300 2252200 2578800 2197800 2433700 1508800 2248500 165180 2489600 1433700 1829100 1646800 2262500 2575500 2148800 2352200 1 1 1 1 1 1 1 1 1 1 1 725770000 232320000 493450000 11850 1429 11003 63229;63230;63231 76694;76695 76694 2 LKGTVGEPTYDAEFQHFLR Unmodified 2207.1011 0.10111761 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 1 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 59.182 59.599 4 4.8782E-24 19740 20211116_3446_TMUAki_TMT10x_S_F7 173.98 155.39 13329000 24744000 247930 21064000 18136000 19494000 16028000 18015000 16590000 17614000 19798000 12412000 23075000 1388600 21725000 17351000 19923000 16385000 18379000 16967000 17219000 18999000 4 4 3 4 4 4 4 4 4 4 4 3316800 5813000 0 4910600 4272000 7608400 4457000 4108500 4091000 4194900 4300300 3088100 5420800 273540 5113700 4099900 7505900 4499900 4356400 4185300 4093400 4141800 1 1 0 1 1 1 1 1 1 1 1 10012000 18931000 247930 16153000 13864000 11885000 11571000 13907000 12499000 13419000 15498000 9323900 17654000 1115100 16611000 13251000 12417000 11886000 14023000 12781000 13125000 14858000 3 3 3 3 3 3 3 3 3 3 3 2712000000 1053600000 1658300000 11851 1695 11004 63232;63233;63234 76696;76697;76698;76699 76698 4 LKIDFGEAAR Unmodified 1118.6084 0.60840804 563 P08754 GNAI3 Guanine nucleotide-binding protein G(k) subunit alpha yes yes 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 49.149 49.632 3 2.4628E-05 15144 20211116_3435_TMUAki_TMT10x_P_F7 101.35 69.478 5961500 9561900 0 8502800 7280700 5634800 5747300 8837800 7037000 7374500 7786800 5550000 8918300 424350 8706100 6936800 5989300 5949900 8780300 7129100 7262600 7488400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5961500 9561900 0 8502800 7280700 5634800 5747300 8837800 7037000 7374500 7786800 5550000 8918300 424350 8706100 6936800 5989300 5949900 8780300 7129100 7262600 7488400 1 1 0 1 1 1 1 1 1 1 1 527100000 0 527100000 11852 563 11005 63235;63236 76700;76701 76700 2 LKIPEGLFDPSNVK Unmodified 1555.861 0.86099391 459 O96019;O96019-2 ACTL6A Actin-like protein 6A yes no 0 0 0 1 By MS/MS By MS/MS 4.14 3.09 2 2 1 2 3 4 70.642 70.587 3 6.1524E-14 22287 20211116_3428_TMUAki_TMT10x_P_F1 149.22 118.39 101520000 172000000 1355000 142430000 121270000 177610000 127660000 140190000 134530000 140480000 142100000 94534000 160380000 9815500 147910000 116520000 177930000 129370000 144430000 136830000 137190000 136840000 18 18 15 18 18 18 18 18 18 18 18 48723000 79527000 859720 66878000 55119000 112010000 65508000 67179000 65704000 66167000 66343000 45371000 74160000 4801100 69795000 53156000 110320000 65910000 70535000 66857000 64664000 63979000 8 8 6 8 8 8 8 8 8 8 8 52797000 92470000 495240 75547000 66155000 65603000 62152000 73010000 68829000 74318000 75756000 49163000 86221000 5014300 78117000 63361000 67612000 63459000 73897000 69975000 72529000 72865000 10 10 9 10 10 10 10 10 10 10 10 7345400000 4113400000 3232100000 11853 459 11006 63237;63238;63239;63240;63241;63242;63243 76702;76703;76704;76705;76706;76707;76708;76709;76710;76711;76712;76713;76714;76715;76716;76717;76718;76719 76702 18 LKKEDIYAVEIVGGATR Unmodified 1861.0309 0.030912783 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 2 By MS/MS By MS/MS 7.43 0.495 4 3 4 3 56.6 56.997 3;4 2.3226E-21 16935 20211116_3436_TMUAki_TMT10x_P_F8 168.09 152.45 43601000 72891000 722530 73244000 56457000 82749000 53154000 55129000 64079000 59925000 61829000 40601000 68017000 4304300 74838000 54084000 83093000 54428000 57589000 64631000 58328000 59714000 9 9 6 9 9 9 9 9 9 9 9 26639000 45251000 416030 44041000 41219000 63161000 35175000 33975000 39278000 37265000 37521000 24806000 42219000 2780300 45300000 39394000 62509000 36122000 36115000 39717000 36260000 36250000 6 6 4 6 6 6 6 6 6 6 6 16962000 27640000 306500 29203000 15239000 19588000 17980000 21154000 24801000 22660000 24308000 15794000 25797000 1524000 29538000 14690000 20583000 18305000 21474000 24915000 22069000 23464000 3 3 2 3 3 3 3 3 3 3 3 11811000000 6623700000 5186800000 11854 916 11007 63244;63245;63246;63247;63248;63249;63250 76720;76721;76722;76723;76724;76725;76726;76727;76728 76723 9 LKLEDFFAR Unmodified 1137.6182 0.61824444 626 P11413;P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 1 By MS/MS By MS/MS 4 3.29 2 1 2 2 3 65.807 65.776 3 0.00035187 22596 20211116_3439_TMUAki_TMT10x_S_F1 115.57 89.68 45447000 67366000 312970 73404000 50323000 62395000 50267000 42395000 40010000 44633000 52017000 42316000 62882000 3934500 74293000 48257000 63794000 50674000 44181000 41578000 43498000 49807000 4 4 1 4 4 4 4 4 4 4 4 24067000 33762000 312970 37298000 26929000 42311000 27058000 23357000 21841000 24082000 26691000 22410000 31517000 2231200 37875000 25836000 42368000 27278000 24726000 22620000 23490000 25598000 2 2 1 2 2 2 2 2 2 2 2 21380000 33603000 0 36106000 23395000 20085000 23209000 19039000 18169000 20551000 25326000 19906000 31365000 1703200 36418000 22421000 21426000 23396000 19455000 18958000 20008000 24209000 2 2 0 2 2 2 2 2 2 2 2 4722200000 2544100000 2178000000 11855 626 11008 63251;63252;63253;63254;63255 76729;76730;76731;76732;76733 76731 5 LKLEETR Unmodified 887.50763 0.50763136 3030 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 yes yes 0 0 0 1 By MS/MS 5 0 1 1 32.725 32.889 3 0.061398 6679 20211116_3444_TMUAki_TMT10x_S_F5 50.834 10.332 302620 492380 0 469020 340870 305300 370720 233490 248900 241440 369020 281760 459350 25475 477680 327590 319510 370710 241260 262810 235470 352270 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 302620 492380 0 469020 340870 305300 370720 233490 248900 241440 369020 281760 459350 25475 477680 327590 319510 370710 241260 262810 235470 352270 1 1 0 1 1 1 1 1 1 1 1 4526300 0 4526300 11856 3030 11009 63256 76734 76734 1 LKLEPHEGLLLR Unmodified 1416.8453 0.84528426 551 P08195;P08195-3;P08195-2;P08195-4 SLC3A2 4F2 cell-surface antigen heavy chain yes no 0 0 0 1 By MS/MS 8 0 1 1 48.234 48.339 3 0.0013254 13448 20211116_3436_TMUAki_TMT10x_P_F8 71.031 44.245 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11857 551 11010 63257 76735 76735 1 LKLPAVVTADLR Unmodified 1294.7973 0.79727144 968 P38117;P38117-2 ETFB Electron transfer flavoprotein subunit beta yes no 0 0 0 1 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 61.527 61.199 3 2.5405E-08 20149 20211116_3429_TMUAki_TMT10x_P_F2 121.24 68.072 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11858 968 11011 63258;63259;63260 76736;76737;76738 76736 3 LKLPSIPLVPVSAQK Unmodified 1588.9916 0.99161415 1829 Q15785 TOMM34 Mitochondrial import receptor subunit TOM34 yes yes 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 71.908 71.836 3 2.0258E-09 22353 20211116_3434_TMUAki_TMT10x_P_F6 122.93 117.75 28759000 50427000 1292800 50748000 41846000 48822000 35451000 35708000 29611000 31983000 39639000 26785000 47055000 3538100 51719000 40026000 49560000 36113000 36856000 30735000 31390000 37928000 4 4 3 4 4 4 4 4 4 4 4 15053000 26004000 450150 25244000 20443000 33413000 18537000 18536000 14826000 16145000 19779000 14017000 24261000 1508700 25928000 19566000 33201000 18787000 19526000 15421000 15867000 18927000 2 2 1 2 2 2 2 2 2 2 2 13706000 24423000 842640 25504000 21404000 15409000 16914000 17172000 14785000 15838000 19860000 12768000 22794000 2029400 25791000 20461000 16360000 17326000 17330000 15314000 15523000 19001000 2 2 2 2 2 2 2 2 2 2 2 1788000000 1114200000 673870000 11859 1829 11012 63261;63262 76739;76740;76741;76742 76739 4 LKLSEELSGGR Unmodified 1187.651 0.65100113 1296 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 43.333 43.882 3 0.00098618 11340 20211116_3445_TMUAki_TMT10x_S_F6 79.853 51.11 1433700 2398400 17216 2196400 1445900 1493200 1354900 2139500 1961000 1942100 2083200 1335100 2237200 135080 2244400 1385200 1579100 1397800 2136800 1972800 1904900 2005800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1433700 2398400 17216 2196400 1445900 1493200 1354900 2139500 1961000 1942100 2083200 1335100 2237200 135080 2244400 1385200 1579100 1397800 2136800 1972800 1904900 2005800 1 1 1 1 1 1 1 1 1 1 1 79315000 0 79315000 11860 1296 11013 63263;63264;63265 76743;76744;76745 76744 3 LKLSILYPATTGR Unmodified 1431.8449 0.84494991 859 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 0 1 By MS/MS By MS/MS 6.25 0.829 1 1 2 2 2 66.804 66.988 3 7.1617E-19 17810 20211116_3434_TMUAki_TMT10x_P_F6 160.5 128.97 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11861 859 11014 63266;63267;63268;63269 76746;76747;76748;76749 76747 4 LKLVPLNQESVEER Unmodified 1652.9097 0.90973501 2184 Q8N1F7;Q8N1F7-2 NUP93 Nuclear pore complex protein Nup93 yes no 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 51.341 51.763 3 0.009686 14570 20211116_3445_TMUAki_TMT10x_S_F6 61.165 52.098 2420700 4261400 31149 4589000 4896700 5883700 3903700 3335900 3265800 2841400 3510200 2254200 3977600 264400 4677700 4672100 5856800 3991900 3505500 3359000 2795400 3378600 1 1 1 1 1 1 1 1 1 1 1 2420700 4261400 31149 4589000 4896700 5883700 3903700 3335900 3265800 2841400 3510200 2254200 3977600 264400 4677700 4672100 5856800 3991900 3505500 3359000 2795400 3378600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 486950000 345120000 141830000 11862 2184 11015 63270;63271;63272;63273 76750;76751 76751 2 LKNEIPNSHILDQYR Unmodified 1838.9639 0.96389585 598 P35520;P0DN79;P35520-2 CBS Cystathionine beta-synthase yes no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 3 3 4 2 49.339 49.682 3;4 1.34E-09 15180 20211116_3435_TMUAki_TMT10x_P_F7 129.05 110.22 43541000 78814000 341110 75154000 69624000 77590000 47016000 65454000 63088000 54613000 57231000 40538000 73529000 3589700 76964000 66165000 78621000 49370000 66837000 63270000 53785000 55390000 7 7 2 7 7 7 7 7 7 7 7 23636000 43405000 11576 41211000 48897000 61563000 31171000 35020000 34262000 29725000 29995000 22003000 40493000 1841800 42502000 46409000 60865000 32641000 36787000 34569000 29249000 29067000 4 4 1 4 4 4 4 4 4 4 4 19905000 35410000 329530 33943000 20726000 16027000 15845000 30434000 28826000 24888000 27237000 18534000 33035000 1747900 34463000 19756000 17756000 16729000 30050000 28701000 24536000 26323000 3 3 1 3 3 3 3 3 3 3 3 5230800000 3273200000 1957600000 11863 598 11016 63274;63275;63276;63277;63278;63279 76752;76753;76754;76755;76756;76757;76758;76759 76753 8 LKPAFIKPYGTVTAANSSFLTDGASAMLIMAEEK 2 Oxidation (M) 3603.8205 0.82045759 1237 P55084;P55084-2 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 0 0 2 2 By MS/MS By matching 2 0 2 1 1 76.218 76.139 5 4.3625E-11 26184 20211116_3429_TMUAki_TMT10x_P_F2 93.505 88.185 3422500 6222300 78933 4304500 2963200 7256300 3390000 5341100 6222700 5608700 4890700 3187300 5798900 350880 4570900 2856700 7167200 3504000 5535200 6159300 5466700 4759200 1 1 1 1 1 1 1 1 1 1 1 3422500 6222300 78933 4304500 2963200 7256300 3390000 5341100 6222700 5608700 4890700 3187300 5798900 350880 4570900 2856700 7167200 3504000 5535200 6159300 5466700 4759200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1709800000 783880000 925910000 11864 1237 11017 63280;63281 76760 76760 1678;1679 1 LKPDEGGEVPVLNVSYKPQK Unmodified 2196.179 0.17903358 1303 P61221 ABCE1 ATP-binding cassette sub-family E member 1 yes yes 0 0 0 2 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 55.822 56.155 4 7.2557E-13 16617 20211116_3436_TMUAki_TMT10x_P_F8 134.07 109.77 47211000 79574000 411670 88108000 62441000 70803000 49664000 65399000 64189000 58263000 62127000 43960000 74283000 4407000 89024000 59568000 73075000 51494000 66553000 64592000 57196000 59996000 6 6 5 6 6 6 6 6 6 6 6 20263000 33317000 264200 35841000 38507000 49002000 27990000 25414000 26887000 25041000 25592000 18869000 31098000 2181700 36582000 36674000 48578000 28907000 27018000 27355000 24472000 24728000 3 3 3 3 3 3 3 3 3 3 3 26948000 46257000 147470 52267000 23934000 21801000 21674000 39986000 37302000 33222000 36535000 25091000 43186000 2225300 52441000 22894000 24497000 22587000 39535000 37237000 32725000 35268000 3 3 2 3 3 3 3 3 3 3 3 7984000000 4036100000 3948000000 11865 1303 11018 63282;63283;63284;63285 76761;76762;76763;76764;76765;76766 76763 6 LKPDPNTLCDEFK Unmodified 1575.7603 0.76029359 38 CON__P02769 yes yes 0 0 0 1 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 57.419 57.474 3 3.5232E-09 16826 20211116_3445_TMUAki_TMT10x_S_F6 128.96 108.3 + 8039400 12188000 61178 11826000 6552700 5244600 5215300 19233000 20266000 16559000 12647000 7485700 11371000 681130 11991000 6251700 6063100 5826000 18769000 19689000 16282000 12436000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8039400 12188000 61178 11826000 6552700 5244600 5215300 19233000 20266000 16559000 12647000 7485700 11371000 681130 11991000 6251700 6063100 5826000 18769000 19689000 16282000 12436000 2 2 1 2 2 2 2 2 2 2 2 719870000 0 719870000 11866 38 11019 63286;63287;63288 76767;76768;76769;76770 76769 4 LKPDPNTLCDEFKADEK Unmodified 2018.9619 0.96190652 38 CON__P02769 yes yes 0 0 0 2 By MS/MS By MS/MS 5.7 1.27 2 3 2 2 1 6 4 56.77 56.988 3;4 3.3149E-15 17264 20211116_3431_TMUAki_TMT10x_P_F4 148.56 129.52 + 150390000 207680000 2049400 214430000 252460000 234760000 204140000 425610000 449950000 360720000 269140000 140040000 193810000 15036000 218580000 240930000 242190000 217210000 421150000 440570000 354970000 265220000 16 16 13 16 16 16 16 16 16 16 16 80055000 107510000 1411500 108980000 183220000 197720000 164420000 219530000 227330000 186410000 138240000 74549000 100320000 9332600 112400000 175290000 196440000 169710000 221110000 225360000 183420000 136110000 10 10 8 10 10 10 10 10 10 10 10 70334000 100170000 637950 105450000 69237000 37043000 39724000 206080000 222610000 174310000 130900000 65487000 93490000 5703300 106180000 65638000 45755000 47499000 200050000 215210000 171550000 129110000 6 6 5 6 6 6 6 6 6 6 6 23747000000 13886000000 9860800000 11867 38 11020 63289;63290;63291;63292;63293;63294;63295;63296;63297;63298 76771;76772;76773;76774;76775;76776;76777;76778;76779;76780;76781;76782;76783;76784;76785;76786 76774 16 LKPEDITQIQPQQLVLR Unmodified 2018.1524 0.1524249 510 P05556-4;P05556-3;P05556;P05556-2;P05556-5 ITGB1 Integrin beta-1 yes no 0 0 0 1 By MS/MS By MS/MS 5 3.29 2 1 2 3 2 67.136 67.219 3 1.1231E-11 21072 20211116_3436_TMUAki_TMT10x_P_F8 139.08 100.57 68051000 114580000 377990 102680000 71757000 118850000 78713000 72393000 79187000 77779000 85381000 63363000 106870000 5825300 105830000 68987000 119030000 79493000 76110000 80758000 75741000 82172000 10 10 5 10 10 10 10 10 10 10 10 47386000 79812000 278060 70460000 49904000 96510000 57442000 51136000 56490000 54762000 57562000 44122000 74438000 4076000 72931000 48047000 95691000 57842000 54390000 57549000 53334000 55495000 8 8 4 8 8 8 8 8 8 8 8 20665000 34766000 99929 32215000 21852000 22336000 21271000 21257000 22697000 23016000 27819000 19242000 32431000 1749400 32897000 20940000 23339000 21650000 21720000 23210000 22407000 26678000 2 2 1 2 2 2 2 2 2 2 2 5420900000 2986400000 2434400000 11868 510 11021 63299;63300;63301;63302;63303 76787;76788;76789;76790;76791;76792;76793;76794;76795;76796 76794 10 LKPEVVEELTR Unmodified 1311.7398 0.73981614 1335 P62166 NCS1 Neuronal calcium sensor 1 yes yes 0 0 0 1 By MS/MS 6 0 1 1 55.429 55.518 3 0.0036742 16061 20211116_3445_TMUAki_TMT10x_S_F6 68.972 37.038 2827800 4765700 588.78 5472700 2948400 2479000 2528900 3778200 3149200 3374100 4064300 2633000 4449500 236680 5488400 2816500 2739300 2606300 3763800 3209100 3312000 3892400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2827800 4765700 588.78 5472700 2948400 2479000 2528900 3778200 3149200 3374100 4064300 2633000 4449500 236680 5488400 2816500 2739300 2606300 3763800 3209100 3312000 3892400 1 1 1 1 1 1 1 1 1 1 1 392480000 0 392480000 11869 1335 11022 63304 76797 76797 1 LKPGAPLRPK Unmodified 1075.6866 0.68659878 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 2 By MS/MS 5 0 1 1 33.975 33.927 3 0.0019716 8270 20211116_3433_TMUAki_TMT10x_P_F5 78.098 37.995 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11870 755 11023 63305 76798 76798 1 LKPGDLVGVNK Unmodified 1138.671 0.67100829 711 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 0 1 By MS/MS By MS/MS 5.2 3.43 2 3 2 3 49.079 49.007 3 1.7663E-07 13707 20211116_3436_TMUAki_TMT10x_P_F8 112.51 77.357 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11871 711 11024 63306;63307;63308;63309;63310 76799;76800;76801;76802;76803 76800 5 LKPGYLEATVDWFR Unmodified 1693.8828 0.88279198 1777 Q15181 PPA1 Inorganic pyrophosphatase yes yes 0 0 0 1 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 76.717 76.611 3 9.5582E-05 26343 20211116_3429_TMUAki_TMT10x_P_F2 92.952 82.047 13627000 21474000 75620 20032000 15284000 20970000 18995000 9602100 8594200 12040000 16219000 12689000 20032000 1223500 20552000 14753000 21050000 18752000 10409000 9468900 11659000 15410000 2 2 2 2 2 2 2 2 2 2 2 8170800 12360000 4459 11448000 8773400 14555000 11751000 4827200 4126000 6366500 9001700 7607900 11530000 690010 11789000 8487500 14418000 11528000 5445000 4704100 6154500 8532700 1 1 1 1 1 1 1 1 1 1 1 5456600 9113100 71161 8584600 6510700 6414800 7244700 4774900 4468200 5673900 7217500 5081200 8501500 533470 8762600 6265500 6632000 7224300 4964500 4764700 5504400 6877400 1 1 1 1 1 1 1 1 1 1 1 2167000000 1452900000 714060000 11872 1777 11025 63311;63312;63313 76804;76805;76806 76804 3 LKPGYLEATVDWFRR Unmodified 1849.9839 0.98390301 1777 Q15181 PPA1 Inorganic pyrophosphatase yes yes 0 0 0 2 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 68.559 68.561 4 1.0765E-34 21103 20211116_3444_TMUAki_TMT10x_S_F5 237.59 177.98 21846000 36143000 211810 31897000 30001000 32363000 31627000 17172000 12656000 17287000 26008000 20342000 33710000 2122800 32847000 28820000 32599000 31409000 18229000 14179000 16879000 24675000 6 6 6 6 6 6 6 6 6 6 6 11200000 18208000 92176 16129000 13007000 21479000 17758000 8885400 6116200 8790300 12741000 10429000 16982000 1039800 16681000 12596000 21268000 17403000 9666800 6966700 8589000 12086000 3 3 3 3 3 3 3 3 3 3 3 10645000 17935000 119630 15768000 16994000 10884000 13870000 8286400 6540000 8496600 13267000 9912900 16727000 1083000 16166000 16223000 11331000 14005000 8562400 7212800 8289500 12590000 3 3 3 3 3 3 3 3 3 3 3 4119800000 2335200000 1784600000 11873 1777 11026 63314;63315;63316;63317 76807;76808;76809;76810;76811;76812 76812 6 LKPKPIDVQVITHHMQR Oxidation (M) 2055.1411 0.14114871 1296 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 1 2 By MS/MS 4 0 1 1 37.342 37.375 6 0.01457 9295 20211116_3431_TMUAki_TMT10x_P_F4 45.618 41.893 1893300 3110900 55598 3200200 4786200 4976300 2391200 2856000 2907100 2350700 2684400 1763200 2903100 249300 3285000 4532400 4912300 2566700 2995600 2927000 2316600 2596400 1 1 1 1 1 1 1 1 1 1 1 1893300 3110900 55598 3200200 4786200 4976300 2391200 2856000 2907100 2350700 2684400 1763200 2903100 249300 3285000 4532400 4912300 2566700 2995600 2927000 2316600 2596400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 334940000 334940000 0 11874 1296 11027 63318 76813 76813 1748 1 LKPLEVELR Unmodified 1095.6652 0.66519463 1117 P49755 TMED10 Transmembrane emp24 domain-containing protein 10 yes yes 0 0 0 1 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 50.582 50.897 3 0.0008394 14169 20211116_3445_TMUAki_TMT10x_S_F6 96.229 62.057 32090000 55882000 310230 48128000 58648000 58926000 43397000 57441000 49675000 45970000 53459000 29880000 52115000 3256800 49808000 55866000 59330000 45011000 58133000 50395000 45369000 51453000 5 5 4 5 5 5 5 5 5 5 5 17937000 31325000 273910 26935000 39843000 43423000 28026000 32899000 27866000 26382000 30173000 16703000 29214000 2049200 28035000 37923000 42983000 29041000 33785000 28438000 26035000 29036000 3 3 3 3 3 3 3 3 3 3 3 14153000 24557000 36312 21193000 18805000 15503000 15371000 24542000 21809000 19588000 23286000 13177000 22902000 1207600 21772000 17943000 16348000 15970000 24348000 21958000 19335000 22417000 2 2 1 2 2 2 2 2 2 2 2 3071200000 1928100000 1143000000 11875 1117 11028 63319;63320;63321;63322;63323 76814;76815;76816;76817;76818 76817 5 LKPLGEAEREFILNLK Unmodified 1869.0724 0.072383667 2732 Q9BYT8 NLN Neurolysin, mitochondrial yes yes 0 0 0 2 By MS/MS By MS/MS 3 2.92 2 1 1 2 2 73.118 73.077 4 2.6575E-35 23575 20211116_3436_TMUAki_TMT10x_P_F8 205.31 171.03 31667000 51174000 533870 49922000 28473000 39539000 37641000 26192000 27530000 29916000 34789000 29489000 47746000 3078200 50862000 27564000 40620000 37388000 27415000 28707000 29064000 33335000 5 5 5 5 5 5 5 5 5 5 5 12193000 18632000 320910 17323000 10472000 17050000 12129000 8580300 10043000 10504000 12009000 11356000 17381000 1285900 17760000 10102000 17196000 12152000 9208800 10378000 10180000 11523000 2 2 2 2 2 2 2 2 2 2 2 19473000 32542000 212970 32599000 18001000 22489000 25511000 17611000 17488000 19412000 22780000 18133000 30365000 1792300 33101000 17462000 23425000 25236000 18206000 18330000 18885000 21812000 3 3 3 3 3 3 3 3 3 3 3 3180900000 1665100000 1515800000 11876 2732 11029 63324;63325;63326;63327 76819;76820;76821;76822;76823 76820 5 LKPNLGNGADLPNYR Unmodified 1640.8635 0.86345352 3226 Q9Y266 NUDC Nuclear migration protein nudC yes yes 0 0 0 1 By MS/MS By MS/MS 4.14 3.09 2 2 1 2 3 4 48.414 48.31 3 1.5432E-24 15369 20211116_3439_TMUAki_TMT10x_S_F1 196.8 175.45 78013000 135130000 395920 162340000 135390000 142720000 83274000 134880000 153350000 122440000 127600000 72636000 126190000 6012300 163390000 128490000 146430000 89363000 137160000 152020000 120100000 123880000 12 12 5 12 12 12 12 12 12 12 12 37281000 64295000 37249 71924000 112000000 116380000 65955000 70357000 81164000 63191000 61528000 34710000 60023000 2808400 73500000 106210000 114780000 69779000 73642000 81208000 62010000 59962000 7 7 1 7 7 7 7 7 7 7 7 40732000 70836000 358670 90412000 23391000 26337000 17319000 64523000 72181000 59253000 66068000 37926000 66171000 3203900 89895000 22280000 31641000 19584000 63518000 70814000 58087000 63922000 5 5 4 5 5 5 5 5 5 5 5 11058000000 7747600000 3310700000 11877 3226 11030 63328;63329;63330;63331;63332;63333;63334 76824;76825;76826;76827;76828;76829;76830;76831;76832;76833;76834;76835;76836 76831 13 LKPPTLIHGQAPSAGLPSQKPK Unmodified 2264.3005 0.30048612 2821 Q9H6Z4;Q9H6Z4-2;Q9H6Z4-3 RANBP3 Ran-binding protein 3 yes no 0 0 0 2 By MS/MS By matching 5 0 2 1 1 44.751 44.884 5 4.0973E-07 12555 20211116_3433_TMUAki_TMT10x_P_F5 85.805 78.852 1812300 3095200 12209 3738700 4981600 5771300 2687200 2748700 3155000 2653500 2796400 1687500 2890600 206020 3799000 4719600 5686100 2860200 2944400 3176500 2595500 2708700 1 1 1 1 1 1 1 1 1 1 1 1812300 3095200 12209 3738700 4981600 5771300 2687200 2748700 3155000 2653500 2796400 1687500 2890600 206020 3799000 4719600 5686100 2860200 2944400 3176500 2595500 2708700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 453850000 271330000 182520000 11878 2821 11031 63335;63336 76837 76837 1 LKPQLLQGVYAMGFNRPSK Oxidation (M) 2162.167 0.16702911 2959 Q9NUU7;Q9UMR2 DDX19A;DDX19B ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B yes no 0 0 1 2 By MS/MS By MS/MS 6.75 0.433 1 3 2 2 57.469 57.932 4;5 1.1609E-08 19095 20211116_3446_TMUAki_TMT10x_S_F7 116.6 100.42 39426000 65505000 286070 60300000 47450000 74331000 42930000 51822000 45858000 48108000 48076000 36711000 61104000 3583100 62093000 45397000 74352000 43873000 53714000 46603000 47138000 46308000 6 6 5 6 6 6 6 6 6 6 6 27297000 43668000 136620 40207000 33067000 63365000 31410000 35191000 31909000 33203000 31796000 25416000 40734000 2406600 41609000 31669000 62490000 31962000 37142000 32436000 32510000 30676000 3 3 2 3 3 3 3 3 3 3 3 12129000 21837000 149440 20093000 14383000 10966000 11520000 16631000 13949000 14905000 16279000 11295000 20370000 1176400 20485000 13728000 11862000 11910000 16572000 14167000 14628000 15632000 3 3 3 3 3 3 3 3 3 3 3 5690100000 2440500000 3249600000 11879 2959 11032 63337;63338;63339;63340 76838;76839;76840;76841;76842;76843 76842 3047 6 LKPQLLQGVYAMGFNRPSK Unmodified 2146.1721 0.17211449 2959 Q9NUU7;Q9UMR2 DDX19A;DDX19B ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B yes no 0 0 0 2 By MS/MS 8 0 1 1 65.874 66.03 4 7.4602E-09 20629 20211116_3436_TMUAki_TMT10x_P_F8 118.96 108.68 8804500 14886000 526910 15964000 9845300 14939000 11573000 7112200 6886000 7286400 9982900 8201800 13894000 1235600 16194000 9515500 15106000 11504000 7631400 7320300 7109100 9534300 1 1 1 1 1 1 1 1 1 1 1 8804500 14886000 526910 15964000 9845300 14939000 11573000 7112200 6886000 7286400 9982900 8201800 13894000 1235600 16194000 9515500 15106000 11504000 7631400 7320300 7109100 9534300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1193800000 1193800000 0 11880 2959 11032 63341 76844 76844 1 LKPQYLEELPGQLK Unmodified 1654.9294 0.92940782 752 P21266 GSTM3 Glutathione S-transferase Mu 3 yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 63.972 64.049 3 4.1335E-05 19296 20211116_3447_TMUAki_TMT10x_S_F8 98.439 76.882 20371000 33381000 137920 38238000 19964000 24983000 19108000 17999000 17394000 19606000 24056000 18969000 31166000 1811700 38468000 19129000 26112000 19374000 18701000 18007000 19082000 23000000 3 3 3 3 3 3 3 3 3 3 3 5967800 9001200 12600 10437000 7425400 11596000 6913500 5047000 5045200 5713000 6357500 5556700 8404500 526930 10564000 7107700 11594000 6981600 5481900 5261000 5552100 6092300 1 1 1 1 1 1 1 1 1 1 1 14403000 24380000 125320 27801000 12538000 13387000 12195000 12952000 12349000 13893000 17699000 13412000 22762000 1284800 27904000 12021000 14517000 12393000 13219000 12746000 13530000 16908000 2 2 2 2 2 2 2 2 2 2 2 2443900000 1255900000 1188000000 11881 752 11033 63342;63343 76845;76846;76847 76846 3 LKPVELR Unmodified 853.53854 0.53853756 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 1 By MS/MS By MS/MS 6 2.61 1 1 1 2 3 2 37.695 37.955 3 0.016284 9066 20211116_3436_TMUAki_TMT10x_P_F8 79.596 19.522 4206100 6665400 30310 6547200 5125100 5171500 4885600 4542000 4467800 4329600 5505600 3916500 6219100 389830 6667000 4910000 5339100 4955200 4643400 4600400 4237300 5278900 4 4 4 4 4 4 4 4 4 4 4 1395700 2049400 12917 2126800 2248500 2687800 1638400 1443600 1456100 1473100 1687600 1299700 1912600 139700 2172600 2141400 2675600 1688200 1531400 1497600 1437500 1620800 2 2 2 2 2 2 2 2 2 2 2 2810300 4616000 17393 4420400 2876700 2483700 3247200 3098400 3011700 2856500 3818000 2616800 4306500 250130 4494400 2768600 2663500 3267100 3112000 3102800 2799800 3658100 2 2 2 2 2 2 2 2 2 2 2 211360000 133600000 77760000 11882 1433 11034 63344;63345;63346;63347;63348 76848;76849;76850;76851;76852 76850 5 LKPVFIR Unmodified 871.56436 0.56435838 1236 P55081 MFAP1 Microfibrillar-associated protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.707 1 2 1 2 2 45.779 45.925 3 0.0018772 12966 20211116_3433_TMUAki_TMT10x_P_F5 117.93 74.81 9172800 14999000 38194 15342000 14721000 14971000 9919200 12397000 12324000 11506000 12689000 8540700 13997000 835190 15621000 13994000 15216000 10387000 12708000 12445000 11274000 12230000 4 4 2 4 4 4 4 4 4 4 4 4688300 7364900 26532 7789400 9656900 10553000 5564300 6117100 6444900 5709200 6257100 4365200 6873800 450260 7957800 9156100 10480000 5885400 6431100 6511400 5592700 6041800 2 2 1 2 2 2 2 2 2 2 2 4484400 7634200 11662 7552200 5063700 4417800 4354900 6280200 5879300 5797200 6432300 4175500 7123200 384920 7663400 4837800 4735700 4501600 6276800 5934100 5681700 6187800 2 2 1 2 2 2 2 2 2 2 2 779110000 370300000 408800000 11883 1236 11035 63349;63350;63351;63352 76853;76854;76855;76856 76854 4 LKPVHGLIFLFK Unmodified 1410.8751 0.87512783 3320 Q9Y5K5;Q9Y5K5-2;Q9Y5K5-4;Q9Y5K5-3 UCHL5 Ubiquitin carboxyl-terminal hydrolase isozyme L5 yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 68.307 68.469 4 9.9606E-06 21229 20211116_3447_TMUAki_TMT10x_S_F8 103.35 91.816 4215000 7310100 102790 6439600 5217300 6574800 5141100 4288600 3712700 4440100 4329600 3925400 6817900 459290 6633000 5006900 6638300 5174600 4480300 3861400 4330200 4157500 2 2 2 2 2 2 2 2 2 2 2 2113600 3740400 55266 3340000 2648500 4832200 2946900 2123100 2018900 2244200 2193400 1968300 3488700 234230 3458000 2550400 4769800 2944900 2299000 2100700 2186800 2110500 1 1 1 1 1 1 1 1 1 1 1 2101500 3569700 47523 3099600 2568800 1742700 2194200 2165500 1693800 2195900 2136200 1957100 3329200 225060 3175000 2456500 1868500 2229700 2181300 1760700 2143400 2047000 1 1 1 1 1 1 1 1 1 1 1 1675500000 1040300000 635170000 11884 3320 11036 63353;63354;63355 76857;76858 76858 2 LKPYFLTDGTGTVTPANASGINDGAAAVVLMK Oxidation (M) 3207.6486 0.64856488 2706 Q9BWD1;Q9BWD1-2 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes no 0 0 1 1 By MS/MS By MS/MS 2.88 2.03 1 4 2 1 4 4 68.683 68.628 3;4 3.7187E-15 25274 20211116_3440_TMUAki_TMT10x_S_F2 107.45 97.391 23528000 45165000 110540 38394000 32870000 43139000 32995000 34286000 37177000 37397000 34944000 21907000 42119000 1723800 39718000 31522000 43455000 33591000 35399000 37559000 36395000 33778000 7 7 2 7 7 7 7 7 7 7 7 10715000 20915000 110540 19268000 11812000 23131000 12669000 14362000 16557000 16786000 15373000 9977100 19509000 624180 19830000 11354000 23129000 12926000 15117000 16632000 16294000 14866000 3 3 2 3 3 3 3 3 3 3 3 12814000 24251000 0 19126000 21059000 20008000 20326000 19924000 20620000 20611000 19571000 11930000 22609000 1099700 19887000 20168000 20327000 20665000 20282000 20927000 20102000 18912000 4 4 0 4 4 4 4 4 4 4 4 23618000000 14814000000 8803900000 11885 2706 11037 63356;63357;63358;63359;63360;63361;63362;63363 76859;76860;76861;76862;76863;76864 76863 2907 6 LKQDTYGDIYNFPIHAFDK Unmodified 2284.1164 0.11643333 2721 Q9BXY0 MAK16 Protein MAK16 homolog yes yes 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 69.95 70.108 4 1.0289E-08 22298 20211116_3436_TMUAki_TMT10x_P_F8 116.98 101.58 32700000 53594000 272360 49831000 41709000 52925000 41413000 39648000 37464000 39776000 43115000 30448000 49995000 2944300 51148000 39992000 53427000 41900000 40985000 38486000 38842000 41417000 6 6 3 6 6 6 6 6 6 6 6 13813000 22188000 61516 20150000 14354000 29144000 18043000 16908000 16476000 16949000 16857000 12861000 20696000 1115700 20835000 13854000 28860000 18061000 17810000 16843000 16552000 16250000 2 2 1 2 2 2 2 2 2 2 2 18887000 31406000 210840 29681000 27355000 23781000 23370000 22740000 20988000 22827000 26258000 17587000 29298000 1828600 30313000 26138000 24567000 23840000 23176000 21643000 22290000 25167000 4 4 2 4 4 4 4 4 4 4 4 4828000000 2694200000 2133700000 11886 2721 11038 63364;63365;63366;63367 76865;76866;76867;76868;76869;76870 76865 6 LKQSLPPGLAVK Unmodified 1249.7758 0.77580772 1401 P63173 RPL38 60S ribosomal protein L38 yes yes 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 52.179 52.301 3 3.4359E-05 15294 20211116_3431_TMUAki_TMT10x_P_F4 89.959 72.227 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11887 1401 11039 63368;63369 76871;76872 76871 2 LKQTEITSATQNQLLFHMLK Oxidation (M) 2359.257 0.25696633 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4;Q7Z4S6-6 KIF21A Kinesin-like protein KIF21A yes no 0 0 1 1 By MS/MS 2.5 0.5 1 1 2 58.855 58.604 4 2.524E-18 19676 20211116_3430_TMUAki_TMT10x_P_F3 152.71 139.11 2526300 4147100 644.13 3548900 3447300 7012400 3412300 5268500 4012700 4083000 3883500 2352000 3867500 190850 3714500 3302500 6890900 3481600 5409200 4051400 4036500 3750300 2 2 1 2 2 2 2 2 2 2 2 2526300 4147100 644.13 3548900 3447300 7012400 3412300 5268500 4012700 4083000 3883500 2352000 3867500 190850 3714500 3302500 6890900 3481600 5409200 4051400 4036500 3750300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 939250000 939250000 0 11888 2082 11040 63370;63371 76873;76874 76874 2585 2 LKRPIELSDYIHPVCLPDK Unmodified 2292.23 0.2300233 32 CON__P00735 yes yes 0 0 0 2 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 62.181 62.009 5 2.3357E-05 20586 20211116_3429_TMUAki_TMT10x_P_F2 81.723 67.109 + 14640000 22422000 57985 25832000 19043000 23404000 18190000 14600000 18916000 19669000 17724000 13631000 20935000 1261200 26076000 18237000 23795000 18518000 15440000 19170000 19001000 17134000 4 4 2 4 4 4 4 4 4 4 4 9935400 15597000 5250.2 16780000 14869000 19339000 13282000 9199300 12497000 12272000 11551000 9250300 14558000 829480 17073000 14213000 19316000 13531000 9957000 12714000 11859000 11172000 3 3 1 3 3 3 3 3 3 3 3 4704600 6824600 52735 9052700 4174200 4064900 4908000 5400300 6419300 7396100 6173000 4380900 6376400 431760 9003300 4024000 4478700 4986800 5483000 6455700 7141200 5962400 1 1 1 1 1 1 1 1 1 1 1 2523100000 1747500000 775560000 11889 32 11041 63372;63373;63374 76875;76876;76877;76878 76877 4 LKSDEDEERVHEEL Unmodified 1726.801 0.80097243 2413 Q96AY3;Q96AY3-2 FKBP10 Peptidyl-prolyl cis-trans isomerase FKBP10 yes no 0 0 0 2 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 36.572 36.437 4 0.00027157 8578 20211116_3428_TMUAki_TMT10x_P_F1 84.559 70.596 1896200 2995000 29248 3608500 3773300 3120800 2144400 3178300 3546700 2384200 3315700 1765800 2796900 210760 3630600 3578900 3210700 2303700 3204800 3538600 2361200 3205700 4 4 4 4 4 4 4 4 4 4 4 897810 1229900 8876 1679200 2861600 2203600 1263000 1373500 1569000 1027300 1520400 836020 1149300 110210 1689200 2704200 2193900 1374200 1428000 1581100 1017500 1468200 2 2 2 2 2 2 2 2 2 2 2 998380 1765100 20372 1929300 911740 917280 881370 1804800 1977700 1356900 1795200 929740 1647600 100550 1941500 874690 1016800 929540 1776800 1957500 1343700 1737400 2 2 2 2 2 2 2 2 2 2 2 191150000 149360000 41789000 11890 2413 11042 63375;63376;63377;63378 76879;76880;76881 76879 3 LKSEDELR Unmodified 988.51892 0.51892433 2433 Q96D71;Q96D71-2;Q96D71-4;Q96D71-3 REPS1 RalBP1-associated Eps domain-containing protein 1 yes no 0 0 0 1 By MS/MS 4 0 1 1 35.247 35.272 3 0.10875 8566 20211116_3431_TMUAki_TMT10x_P_F4 35.269 8.3796 2638200 3999500 0 3904200 5269900 5555700 3352400 3268600 3099600 2909500 3277800 2456400 3731600 249750 4014400 5004500 5506500 3492900 3428000 3170700 2856400 3156500 1 1 0 1 1 1 1 1 1 1 1 2638200 3999500 0 3904200 5269900 5555700 3352400 3268600 3099600 2909500 3277800 2456400 3731600 249750 4014400 5004500 5506500 3492900 3428000 3170700 2856400 3156500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 382520000 382520000 0 11891 2433 11043 63379 76882 76882 1 LKSEDEPTR Unmodified 1073.5353 0.53530267 2381;134 Q92973;Q92973-2;O14787-2;O14787 TNPO1;TNPO2 Transportin-1;Transportin-2 no no 0 0 0 1 By MS/MS 3 0 1 1 29.634 29.371 3 0.0049653 8816 20211116_3441_TMUAki_TMT10x_S_F3 71.066 49.073 358840 591530 3565.2 505720 380740 379090 434180 340690 349970 320440 418330 334150 551640 33380 520090 366630 393140 435010 347720 362140 313790 401430 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 358840 591530 3565.2 505720 380740 379090 434180 340690 349970 320440 418330 334150 551640 33380 520090 366630 393140 435010 347720 362140 313790 401430 1 1 1 1 1 1 1 1 1 1 1 5260000 0 5260000 11892 2381;134 11044 63380 76883 76883 1 LKSELVANNVTLPAGEQR Unmodified 1938.0534 0.053439139 1006;1007 P42166;P42167;P42167-2;P42167-3 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 0 1 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 51.814 52.047 3 4.868E-31 14432 20211116_3447_TMUAki_TMT10x_S_F8 181.64 169.08 30783000 51499000 369460 57335000 53992000 61547000 37358000 39027000 44388000 41034000 45057000 28659000 48076000 2554800 58142000 51330000 61935000 38981000 40877000 44873000 39993000 43444000 11 11 7 11 11 11 11 11 11 11 11 19916000 32730000 305810 36438000 45752000 52373000 28945000 24561000 28281000 26154000 29197000 18541000 30554000 1682200 37149000 43425000 51746000 30219000 26423000 28833000 25478000 28137000 6 6 4 6 6 6 6 6 6 6 6 10867000 18769000 63644 20897000 8239900 9174600 8412500 14466000 16107000 14879000 15860000 10118000 17521000 872650 20993000 7905700 10188000 8762300 14454000 16040000 14515000 15308000 5 5 3 5 5 5 5 5 5 5 5 5679100000 3133400000 2545700000 11893 1006;1007 11045 63381;63382;63383;63384;63385;63386 76884;76885;76886;76887;76888;76889;76890;76891;76892;76893;76894 76893 11 LKSELVANNVTLPAGEQRK Unmodified 2066.1484 0.14840216 1006;1007 P42166;P42167;P42167-2;P42167-3 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 0 2 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 47.986 47.929 4 9.2922E-24 12773 20211116_3447_TMUAki_TMT10x_S_F8 171.07 145.51 52842000 80634000 463620 91402000 111320000 103230000 61368000 75985000 92174000 68778000 80681000 49202000 75280000 5352500 92661000 105500000 103820000 65814000 78415000 92015000 67469000 78186000 9 9 6 9 9 9 9 9 9 9 9 33511000 49776000 324620 57163000 94879000 88891000 47851000 47485000 57376000 42518000 51261000 31203000 46474000 3770700 58269000 89801000 87668000 51291000 50220000 57736000 41729000 49639000 5 5 3 5 5 5 5 5 5 5 5 19331000 30858000 139000 34238000 16445000 14339000 13517000 28500000 34798000 26260000 29421000 17999000 28806000 1581800 34393000 15696000 16153000 14523000 28195000 34279000 25739000 28547000 4 4 3 4 4 4 4 4 4 4 4 4428300000 2708200000 1720100000 11894 1006;1007 11046 63387;63388;63389;63390 76895;76896;76897;76898;76899;76900;76901;76902;76903 76902 9 LKTEDSLMPEEEFLRR Oxidation (M) 2007.9935 0.993541 1810 Q15459;Q15459-2 SF3A1 Splicing factor 3A subunit 1 yes no 0 0 1 2 By MS/MS By MS/MS 3.71 0.7 3 3 1 3 4 51.457 51.449 4 2.6031E-07 13997 20211116_3444_TMUAki_TMT10x_S_F5 106.6 88.19 13170000 21507000 98337 22125000 16672000 19851000 13791000 21220000 20433000 17981000 19641000 12263000 20071000 1201300 22494000 15918000 20394000 14345000 21409000 20469000 17695000 18971000 6 6 5 6 6 6 6 6 6 6 6 5011500 7808900 50615 8159400 8394400 11920000 6800600 7658100 7190200 6614000 7419200 4666600 7287800 510040 8355400 8012000 11815000 6993600 7970100 7305900 6502600 7149900 2 2 2 2 2 2 2 2 2 2 2 8158300 13699000 47722 13966000 8278000 7931100 6990000 13562000 13243000 11367000 12222000 7596300 12783000 691270 14138000 7905800 8578500 7351200 13439000 13163000 11192000 11822000 4 4 3 4 4 4 4 4 4 4 4 2154500000 893520000 1261000000 11895 1810 11047 63391;63392;63393;63394;63395;63396;63397 76904;76905;76906;76907;76908;76909 76909 2436 6 LKTEGNEQMKVENFEAAVHFYGK Unmodified 2668.2955 0.29553668 242 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha yes yes 0 0 0 2 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 62.301 62.649 5 4.059E-07 18773 20211116_3447_TMUAki_TMT10x_S_F8 84.181 74.123 16208000 26799000 168780 24962000 18843000 21304000 19097000 13168000 9133800 13744000 17834000 15092000 24999000 1538000 25541000 18084000 21746000 19049000 13816000 10037000 13399000 16934000 2 2 2 2 2 2 2 2 2 2 2 7308300 12016000 35997 10909000 8570700 13954000 10519000 6303200 4676600 6160300 8167900 6805000 11208000 657140 11253000 8269100 13855000 10387000 6790500 5137200 6022300 7771200 1 1 1 1 1 1 1 1 1 1 1 8899700 14783000 132790 14053000 10273000 7350400 8577900 6864900 4457100 7583600 9665700 8287500 13792000 880830 14288000 9815300 7890700 8662000 7025700 4899500 7377000 9162900 1 1 1 1 1 1 1 1 1 1 1 1513800000 830240000 683580000 11896 242 11048 63398;63399 76910;76911 76911 2 LKTNHIGHTGYLNTVTVSPDGSLCASGGK Unmodified 2983.4822 0.48216825 1405 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 0 1 By MS/MS 2 0 1 1 46.987 46.699 5 5.0104E-18 14306 20211116_3429_TMUAki_TMT10x_P_F2 122.53 113.32 1298400 2576500 38220 2334200 4106400 6031000 3059100 3465300 3881300 3400200 2664000 1209100 2403300 172040 2453700 3912700 5858300 3183200 3650900 3869400 3323500 2607500 2 2 1 2 2 2 2 2 2 2 2 1298400 2576500 38220 2334200 4106400 6031000 3059100 3465300 3881300 3400200 2664000 1209100 2403300 172040 2453700 3912700 5858300 3183200 3650900 3869400 3323500 2607500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 365890000 365890000 0 11897 1405 11049 63400 76912;76913 76913 2 LKVDLTK Unmodified 815.51165 0.5116541 2596 Q99661;Q99661-2 KIF2C Kinesin-like protein KIF2C yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 45.258 45.298 3 0.060567 11747 20211116_3447_TMUAki_TMT10x_S_F8 53.327 7.1689 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11898 2596 11050 63401;63402 76914;76915 76915 2 LKVDSFR Unmodified 863.4865 0.48650199 1307 P61289;P61289-2 PSME3 Proteasome activator complex subunit 3 yes no 0 0 0 1 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 38.028 38.228 3 0.011766 11406 20211116_3439_TMUAki_TMT10x_S_F1 85.666 63.919 4564800 7202300 80121 7655800 5572200 5034700 4829600 4193500 4338300 4033400 5804300 4250900 6722200 467230 7738900 5329000 5271800 4922500 4301300 4486900 3945800 5553800 4 4 4 4 4 4 4 4 4 4 4 999490 1595600 35403 1586800 2154800 2076100 1171900 1112700 1198000 944860 1286900 930890 1488800 132040 1626800 2043600 2063100 1240900 1174900 1220800 929710 1238600 1 1 1 1 1 1 1 1 1 1 1 3565300 5606700 44718 6068900 3417300 2958700 3657700 3080800 3140300 3088600 4517400 3320000 5233400 335190 6112100 3285400 3208700 3681600 3126400 3266200 3016100 4315100 3 3 3 3 3 3 3 3 3 3 3 213310000 74481000 138820000 11899 1307 11051 63403;63404;63405 76916;76917;76918;76919 76917 4 LKVGLQVVAVK Unmodified 1152.7594 0.75942937 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 1 By MS/MS 4 0 1 1 56.47 56.616 3 0.00084359 17082 20211116_3431_TMUAki_TMT10x_P_F4 81.017 69.169 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11900 613 11052 63406 76920 76920 1 LKVNFLPEIITLSK Unmodified 1613.9756 0.97562974 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 1 By MS/MS 5 0 1 1 78.615 78.626 3 0.0033454 25250 20211116_3444_TMUAki_TMT10x_S_F5 65.704 44.147 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11901 1695 11053 63407 76921 76921 1 LKVPEWVDTVK Unmodified 1312.7391 0.73908786 974 P39019 RPS19 40S ribosomal protein S19 yes yes 0 0 0 1 By MS/MS By MS/MS 6.17 2.41 1 1 2 2 3 3 62.385 62.658 3 1.4015E-08 18663 20211116_3447_TMUAki_TMT10x_S_F8 153.38 89.62 142950000 230740000 1725200 234460000 205820000 199960000 181900000 82760000 69969000 104110000 163100000 133110000 215320000 14297000 238410000 196850000 203200000 182290000 90699000 79384000 100800000 154460000 9 9 8 9 9 9 9 9 9 9 9 83895000 128160000 868070 128300000 157550000 155960000 134640000 42259000 37430000 57904000 89928000 78121000 119590000 8753300 131290000 150540000 154620000 134760000 49172000 44195000 55907000 85125000 4 4 3 4 4 4 4 4 4 4 4 59056000 102580000 857140 106160000 48274000 44000000 47255000 40501000 32540000 46209000 73174000 54994000 95732000 5544000 107120000 46314000 48580000 47530000 41526000 35189000 44895000 69331000 5 5 5 5 5 5 5 5 5 5 5 14473000000 8686500000 5786600000 11902 974 11054 63408;63409;63410;63411;63412;63413 76922;76923;76924;76925;76926;76927;76928;76929;76930;76931 76930 10 LKVPPAINQFTQALDR Unmodified 1810.0101 0.010117761 1358 P62424 RPL7A 60S ribosomal protein L7a yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 71.349 71.167 3 2.8461E-29 24117 20211116_3429_TMUAki_TMT10x_P_F2 193.32 156.68 65686000 107340000 1312600 101720000 62605000 101340000 73998000 62356000 62228000 66142000 76660000 61169000 100140000 6494500 104160000 60386000 102380000 74100000 65480000 64334000 64442000 73505000 19 19 16 19 19 19 19 19 19 19 19 41306000 65567000 880120 62053000 39574000 74762000 46140000 40007000 38905000 41485000 47198000 38467000 61168000 4188200 63743000 38161000 74598000 46234000 42475000 40190000 40455000 45273000 11 11 10 11 11 11 11 11 11 11 11 24380000 41776000 432430 39666000 23032000 26576000 27859000 22349000 23324000 24658000 29463000 22703000 38973000 2306300 40419000 22225000 27787000 27865000 23005000 24144000 23987000 28231000 8 8 6 8 8 8 8 8 8 8 8 20575000000 10435000000 10140000000 11903 1358 11055 63414;63415;63416;63417;63418;63419 76932;76933;76934;76935;76936;76937;76938;76939;76940;76941;76942;76943;76944;76945;76946;76947;76948;76949;76950 76933 19 LKVPPAINQFTQALDRQTATQLLK Unmodified 2693.5228 0.5228345 1358 P62424 RPL7A 60S ribosomal protein L7a yes yes 0 0 0 2 By MS/MS By MS/MS 6 0 2 1 1 77.188 77.158 4 5.4395E-48 24971 20211116_3445_TMUAki_TMT10x_S_F6 208.39 193.78 11413000 20808000 183650 19306000 15606000 16916000 13516000 11343000 10612000 10158000 14584000 10628000 19411000 1176100 19766000 14922000 17255000 13729000 11778000 11064000 9969800 13946000 2 2 2 2 2 2 2 2 2 2 2 6636700 11520000 102160 10727000 6421800 11870000 7999000 6418100 5682900 6032800 7868800 6180200 10746000 642430 11016000 6203400 11899000 7959600 6789100 5960300 5907800 7523000 1 1 1 1 1 1 1 1 1 1 1 4776600 9288500 81494 8579700 9183700 5045500 5516700 4924600 4929100 4125400 6715400 4448100 8664500 533690 8749900 8718600 5355300 5769400 4989100 5103600 4062000 6422800 1 1 1 1 1 1 1 1 1 1 1 2804900000 1220500000 1584400000 11904 1358 11056 63420;63421 76951;76952 76952 2 LKVSELKEELK Unmodified 1314.7759 0.7758673 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 2 By MS/MS 8 0 1 1 53.582 53.684 4 0.00040831 15607 20211116_3436_TMUAki_TMT10x_P_F8 89.231 53.209 4276200 6420900 93175 6977800 16550000 14718000 6974500 8700700 8679600 6786500 7451800 3982200 5993500 613260 7194900 15634000 14381000 7628000 9092700 8711800 6706900 7226500 1 1 1 1 1 1 1 1 1 1 1 4276200 6420900 93175 6977800 16550000 14718000 6974500 8700700 8679600 6786500 7451800 3982200 5993500 613260 7194900 15634000 14381000 7628000 9092700 8711800 6706900 7226500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 794590000 794590000 0 11905 1474 11057 63422 76953 76953 1 LKVTEGGEPYR Unmodified 1247.651 0.65100113 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 35.445 35.62 3 6.5485E-05 9040 20211116_3433_TMUAki_TMT10x_P_F5 92.295 60.535 676900 1067800 5124 951380 762840 829990 853140 1050700 1083900 888720 1070400 630300 995910 62099 976970 734020 857980 867800 1052300 1092100 874640 1033000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 676900 1067800 5124 951380 762840 829990 853140 1050700 1083900 888720 1070400 630300 995910 62099 976970 734020 857980 867800 1052300 1092100 874640 1033000 1 1 1 1 1 1 1 1 1 1 1 60906000 0 60906000 11906 1730 11058 63423;63424 76954;76955 76954 2 LKVTELR Unmodified 857.53345 0.53345218 1874 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 0 1 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 35.94 36.258 3 0.036203 7910 20211116_3434_TMUAki_TMT10x_P_F6 61.582 11.749 898140 1346200 19041 1258500 1412800 1562400 1124100 1210200 1171100 1047700 1204000 836390 1255800 97679 1294600 1348400 1565000 1156800 1243300 1190500 1029900 1160400 4 4 3 4 4 4 4 4 4 4 4 568610 822960 7819.7 786860 1037800 1160100 719590 786890 725360 658200 772630 529480 767780 59265 810860 987480 1150500 746730 815040 739350 648130 743860 3 3 2 3 3 3 3 3 3 3 3 329530 523250 11221 471610 374970 402270 404530 423290 445720 389470 431340 306910 488060 38414 483730 360960 414550 410060 428300 451130 381770 416540 1 1 1 1 1 1 1 1 1 1 1 122190000 67589000 54601000 11907 1874 11059 63425;63426;63427;63428 76956;76957;76958;76959 76956 4 LKWGMEYK Unmodified 1053.5317 0.53173762 1350 P62306 SNRPF Small nuclear ribonucleoprotein F yes yes 0 0 0 1 By MS/MS 2 0 1 1 52.625 52.371 3 0.0043439 16509 20211116_3429_TMUAki_TMT10x_P_F2 87.258 48.902 6045700 9015600 48539 10816000 15007000 8795200 10630000 3112200 2378200 2635300 6422600 5629500 8419300 671980 10877000 14282000 8956900 10756000 3436800 2924100 2593400 6070500 1 1 1 1 1 1 1 1 1 1 1 6045700 9015600 48539 10816000 15007000 8795200 10630000 3112200 2378200 2635300 6422600 5629500 8419300 671980 10877000 14282000 8956900 10756000 3436800 2924100 2593400 6070500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 397930000 397930000 0 11908 1350 11060 63429 76960 76960 1 LKWVEISNEVR Unmodified 1371.751 0.75104953 705 P17480;P17480-2 UBTF Nucleolar transcription factor 1 yes no 0 0 0 1 By MS/MS 8 0 1 1 56.594 56.744 3 0.015875 16847 20211116_3436_TMUAki_TMT10x_P_F8 63.181 43.938 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11909 705 11061 63430 76961 76961 1 LLAALLEDEGGSGRPLLQAAK Unmodified 2121.1794 0.17936793 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 78.105 78.128 3 3.2558E-26 25638 20211116_3436_TMUAki_TMT10x_P_F8 165.17 139.97 36490000 59484000 497270 54314000 39553000 55623000 44770000 39494000 37675000 41894000 46885000 33979000 55486000 3486100 55794000 38083000 56221000 44919000 41040000 38966000 40817000 44943000 4 4 3 4 4 4 4 4 4 4 4 21290000 32685000 150850 31500000 20611000 36450000 23492000 22284000 20626000 23798000 25765000 19824000 30494000 1850700 32293000 19841000 36509000 23590000 23417000 21291000 23180000 24695000 2 2 1 2 2 2 2 2 2 2 2 15200000 26799000 346420 22814000 18942000 19173000 21278000 17210000 17049000 18097000 21120000 14155000 24991000 1635400 23501000 18242000 19712000 21330000 17623000 17674000 17638000 20248000 2 2 2 2 2 2 2 2 2 2 2 7222900000 3807100000 3415800000 11910 3293 11062 63431;63432;63433;63434 76962;76963;76964;76965 76963 4 LLAAVEAFYSPPSHDRPR Unmodified 2025.0432 0.043208804 2149 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein yes yes 0 0 0 1 By MS/MS 3 0 1 1 67.469 67.178 4 5.2645E-24 23041 20211116_3430_TMUAki_TMT10x_P_F3 176.33 162.25 1566500 2473100 37261 2502100 2071300 3457900 1866600 1909400 1854500 1848700 2067900 1458700 2307800 161900 2564800 1982500 3428900 1903700 2017700 1894700 1808100 1988300 2 2 1 2 2 2 2 2 2 2 2 1566500 2473100 37261 2502100 2071300 3457900 1866600 1909400 1854500 1848700 2067900 1458700 2307800 161900 2564800 1982500 3428900 1903700 2017700 1894700 1808100 1988300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 732700000 732700000 0 11911 2149 11063 63435 76966;76967 76966 2 LLACIASR Unmodified 902.50077 0.50077184 1338 P62241 RPS8 40S ribosomal protein S8 yes yes 0 0 0 0 By MS/MS 2 0 1 1 51.114 50.965 2 0.0052879 14689 20211116_3440_TMUAki_TMT10x_S_F2 88.954 56.483 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11912 1338 11064 63436 76968 76968 1 LLACIASRPGQCGR Unmodified 1557.7868 0.78679988 1338 P62241 RPS8 40S ribosomal protein S8 yes yes 0 0 0 1 By MS/MS By MS/MS 5 1.93 2 2 2 3 2 2 2 7 8 42.454 42.561 2;3 3.953E-30 10478 20211116_3444_TMUAki_TMT10x_S_F5 220.74 199.37 31864000 50474000 319690 58353000 57590000 54134000 36697000 42884000 37571000 35664000 45166000 29670000 47128000 3151900 58910000 54705000 55156000 38343000 43953000 38453000 35129000 43335000 20 20 14 20 20 20 20 20 20 20 20 19836000 30172000 116200 35450000 46483000 44381000 26310000 26162000 23015000 21526000 27526000 18469000 28173000 2000900 35926000 44062000 44252000 27640000 27380000 23718000 21214000 26414000 10 10 6 10 10 10 10 10 10 10 10 12028000 20303000 203490 22903000 11107000 9753400 10387000 16723000 14556000 14138000 17640000 11201000 18954000 1151000 22984000 10643000 10904000 10703000 16573000 14735000 13915000 16921000 10 10 8 10 10 10 10 10 10 10 10 12439000000 7554200000 4885100000 11913 1338 11065 63437;63438;63439;63440;63441;63442;63443;63444;63445;63446;63447;63448;63449;63450;63451 76969;76970;76971;76972;76973;76974;76975;76976;76977;76978;76979;76980;76981;76982;76983;76984;76985;76986;76987;76988;76989 76984 21 LLADPTGAFGK Unmodified 1088.5866 0.58660996 860 P30044;P30044-2;P30044-3;P30044-4 PRDX5 Peroxiredoxin-5, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 65.299 65.578 2 7.531E-12 19926 20211116_3447_TMUAki_TMT10x_S_F8 178.22 116.22 36113000 56643000 652710 63313000 42674000 49859000 39307000 40367000 43673000 42550000 46739000 33628000 52879000 3543300 63918000 40863000 51409000 40182000 41587000 44348000 41467000 44992000 5 5 3 5 5 5 5 5 5 5 5 15872000 23534000 0 25331000 23185000 29533000 18608000 16221000 17486000 17031000 18643000 14777000 21966000 1267400 25777000 22106000 29528000 19079000 17188000 17879000 16600000 17949000 2 2 0 2 2 2 2 2 2 2 2 20241000 33109000 652710 37983000 19490000 20326000 20699000 24147000 26187000 25519000 28095000 18851000 30913000 2275900 38140000 18758000 21881000 21102000 24399000 26469000 24867000 27044000 3 3 3 3 3 3 3 3 3 3 3 3257200000 1710000000 1547200000 11914 860 11066 63452;63453;63454;63455 76990;76991;76992;76993;76994 76993 5 LLADQAEAR Unmodified 985.51926 0.51925868 1456 P84098 RPL19 60S ribosomal protein L19 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 36.053 35.994 2 2.2334E-06 10074 20211116_3429_TMUAki_TMT10x_P_F2 193.1 89.748 4444300 7703600 12614 7349200 6845000 6862500 5552700 4216900 4501500 4058500 5942600 4137800 7187000 371300 7515100 6528800 6961700 5667300 4416300 4676600 3970300 5688000 6 6 3 6 6 6 6 6 6 6 6 2613200 4493800 0 4210400 4901700 5278300 3358300 2409900 2608000 2363000 3463400 2432800 4192200 213300 4331300 4658900 5246800 3463900 2593500 2716400 2309800 3314500 2 2 0 2 2 2 2 2 2 2 2 1831100 3209800 12614 3138700 1943300 1584300 2194400 1807100 1893500 1695500 2479200 1705000 2994800 158000 3183800 1869900 1714900 2203400 1822700 1960300 1660500 2373500 4 4 3 4 4 4 4 4 4 4 4 787910000 319950000 467960000 11915 1456 11067 63456;63457;63458;63459;63460;63461;63462;63463 76995;76996;76997;76998;76999;77000;77001;77002 76996 8 LLADQAEARR Unmodified 1141.6204 0.62036971 1456 P84098 RPL19 60S ribosomal protein L19 yes yes 0 0 0 1 By MS/MS By MS/MS 4 0.707 1 2 1 3 1 31.741 31.679 2;3 9.2441E-08 7039 20211116_3431_TMUAki_TMT10x_P_F4 159.94 80.736 2682200 4306800 15173 4099900 4244400 4345200 3037300 2764600 2833500 2521400 3345600 2497500 4017900 256220 4200900 4040200 4376000 3137700 2883400 2909700 2472500 3211500 4 4 3 4 4 4 4 4 4 4 4 1965200 3175500 15173 3015300 3341500 3794100 2308800 2047100 2135900 1873100 2467300 1829900 2962500 196350 3099100 3178900 3777900 2390600 2164300 2192200 1836500 2369800 3 3 3 3 3 3 3 3 3 3 3 716990 1131200 0 1084600 902920 551120 728490 717580 697610 648270 878330 667570 1055400 59873 1101800 861240 598090 747100 719110 717460 635990 841700 1 1 0 1 1 1 1 1 1 1 1 381520000 277070000 104460000 11916 1456 11068 63464;63465;63466;63467 77003;77004;77005;77006 77003 4 LLAEGHPDPDAELQR Unmodified 1659.8216 0.82164829 1118 P49756 RBM25 RNA-binding protein 25 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 42.706 42.615 3 1.3306E-19 12621 20211116_3429_TMUAki_TMT10x_P_F2 170.11 153.62 11659000 17969000 252140 22689000 21734000 21921000 13465000 14791000 15239000 13499000 16697000 10858000 16784000 1237900 22802000 20645000 22219000 14145000 15360000 15477000 13237000 16062000 11 11 8 11 11 11 11 11 11 11 11 8461300 12505000 214020 16226000 18949000 19681000 11436000 10752000 11139000 9758200 11637000 7879800 11682000 1030500 16342000 17992000 19636000 11983000 11353000 11362000 9571300 11210000 7 7 6 7 7 7 7 7 7 7 7 3197900 5463800 38124 6462600 2784600 2240200 2028900 4039500 4100500 3741200 5060000 2977800 5102000 207440 6459300 2652900 2583000 2161600 4007300 4115000 3666100 4851500 4 4 2 4 4 4 4 4 4 4 4 1857400000 1106400000 751060000 11917 1118 11069 63468;63469;63470;63471;63472;63473;63474;63475 77007;77008;77009;77010;77011;77012;77013;77014;77015;77016;77017;77018 77008 12 LLAEILR Unmodified 826.52764 0.52763852 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 69.312 69.694 2 0.0026885 23964 20211116_3446_TMUAki_TMT10x_S_F7 122.98 4.2922 8124900 13153000 0 12877000 9159200 9928900 7487100 9314000 8135200 7855000 9428900 7564000 12272000 546530 13112000 8731000 10283000 7702000 9457200 8293800 7731700 9055700 2 2 0 2 2 2 2 2 2 2 2 4264600 6717200 0 6680500 4634000 6279900 4193600 5093300 4356500 3954600 4719300 3970000 6267700 266910 6811800 4426300 6395600 4281900 5204300 4437700 3909100 4541300 1 1 0 1 1 1 1 1 1 1 1 3860300 6436100 0 6196100 4525200 3649100 3293500 4220700 3778700 3900500 4709700 3594000 6004700 279610 6299900 4304800 3887400 3420100 4252800 3856000 3822600 4514400 1 1 0 1 1 1 1 1 1 1 1 954330000 483160000 471170000 11918 1018 11070 63476;63477;63478 77019;77020;77021 77021 3 LLAEPVPGIK Unmodified 1035.6328 0.63283187 1294 P61088;Q5JXB2 UBE2N;UBE2NL Ubiquitin-conjugating enzyme E2 N;Putative ubiquitin-conjugating enzyme E2 N-like yes no 0 0 0 0 By MS/MS By MS/MS 6.29 1.03 2 2 2 1 3 4 62.18 62.416 2 6.6262E-07 20286 20211116_3435_TMUAki_TMT10x_P_F7 157.91 120.18 59413000 95375000 1009400 101800000 72865000 82844000 63746000 55907000 57679000 60423000 72298000 55326000 89019000 6054900 103120000 69698000 84960000 64949000 58337000 59463000 58826000 69291000 6 6 6 6 6 6 6 6 6 6 6 30980000 47377000 452350 49501000 43785000 56836000 34951000 28756000 30661000 32100000 36650000 28849000 44216000 3169400 50459000 41788000 56817000 35781000 30755000 31593000 31213000 35169000 3 3 3 3 3 3 3 3 3 3 3 28433000 47998000 557060 52300000 29080000 26008000 28795000 27150000 27017000 28323000 35649000 26478000 44804000 2885500 52657000 27910000 28143000 29168000 27582000 27870000 27614000 34122000 3 3 3 3 3 3 3 3 3 3 3 8579000000 4551800000 4027200000 11919 1294 11071 63479;63480;63481;63482;63483;63484;63485 77022;77023;77024;77025;77026;77027;77028 77024 7 LLAEPVPGIKAEPDESNAR Unmodified 2005.048 0.04801941 1294 P61088;Q5JXB2 UBE2N;UBE2NL Ubiquitin-conjugating enzyme E2 N;Putative ubiquitin-conjugating enzyme E2 N-like yes no 0 0 0 1 By MS/MS By MS/MS 4.89 0.994 1 2 3 3 5 4 54.378 54.509 3;4 2.6117E-24 15332 20211116_3434_TMUAki_TMT10x_P_F6 176.11 160.17 34127000 59072000 357960 63597000 55972000 66626000 39799000 65072000 65599000 52680000 53696000 31777000 55137000 3346800 64605000 53276000 67653000 42014000 65868000 65185000 51961000 52167000 12 12 6 12 12 12 12 12 12 12 12 18212000 30901000 306580 33898000 40891000 53245000 29114000 34981000 36030000 28571000 29139000 16959000 28845000 2039700 34659000 38926000 52639000 30362000 36296000 36107000 28168000 28323000 6 6 4 6 6 6 6 6 6 6 6 15915000 28171000 51377 29699000 15081000 13382000 10684000 30090000 29569000 24109000 24557000 14818000 26292000 1307100 29946000 14349000 15014000 11652000 29572000 29078000 23793000 23844000 6 6 2 6 6 6 6 6 6 6 6 7061200000 3717900000 3343300000 11920 1294 11072 63486;63487;63488;63489;63490;63491;63492;63493;63494 77029;77030;77031;77032;77033;77034;77035;77036;77037;77038;77039;77040 77034 12 LLALNSLYSPK Unmodified 1217.702 0.70197407 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 2 4 2 4 73.105 72.971 2;3 1.1777E-14 23758 20211116_3431_TMUAki_TMT10x_P_F4 193.52 148.44 16737000 27505000 205410 25723000 18468000 23330000 20157000 18934000 18577000 20871000 21757000 15586000 25658000 1601400 26331000 17762000 23816000 20309000 19530000 19081000 20304000 20890000 4 4 3 4 4 4 4 4 4 4 4 5762700 9678300 490.66 8503200 7402200 12555000 8389000 6560100 6505700 7263400 7480100 5365600 9026500 501190 8818300 7122500 12406000 8399400 6993500 6735500 7064800 7185600 1 1 1 1 1 1 1 1 1 1 1 10975000 17826000 204920 17219000 11065000 10775000 11768000 12374000 12071000 13607000 14277000 10220000 16632000 1100300 17513000 10640000 11411000 11910000 12537000 12346000 13239000 13704000 3 3 2 3 3 3 3 3 3 3 3 1233800000 501140000 732650000 11921 1433 11073 63495;63496;63497;63498;63499;63500 77041;77042;77043;77044;77045;77046;77047 77041 7 LLALSGPGGGR Unmodified 996.57163 0.5716286 2796 Q9H307 PNN Pinin yes yes 0 0 0 0 By MS/MS 2 0 1 1 50.055 49.927 2 0.0086441 14243 20211116_3440_TMUAki_TMT10x_S_F2 65.157 35.684 4644800 7635700 68702 7485100 4376400 4015400 3821700 7001300 6404200 5648300 6620700 4325300 7124300 445360 7594800 4186500 4371700 3985500 6927200 6409900 5572200 6380100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4644800 7635700 68702 7485100 4376400 4015400 3821700 7001300 6404200 5648300 6620700 4325300 7124300 445360 7594800 4186500 4371700 3985500 6927200 6409900 5572200 6380100 1 1 1 1 1 1 1 1 1 1 1 98458000 0 98458000 11922 2796 11074 63501 77048 77048 1 LLAPHIGR Unmodified 875.53412 0.53412088 1194 P52948;P52948-6;P52948-5;P52948-2 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 0 0 0 0 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 37.132 37.228 3 0.00016851 10553 20211116_3429_TMUAki_TMT10x_P_F2 153.15 123.81 1575300 2259000 139050 2776700 1849600 2322200 1843800 1530500 1685400 1767400 1964300 1467800 2109800 264030 2789400 1781700 2375900 1865700 1603100 1731400 1716400 1886200 6 6 6 6 6 6 6 6 6 6 6 734000 1053000 42067 1179900 1113100 1377300 862240 754580 841300 865440 919970 683740 983050 105370 1197700 1063500 1376900 887070 801950 859590 840660 885030 3 3 3 3 3 3 3 3 3 3 3 841270 1206000 96978 1596800 736490 944880 981580 775890 844110 901980 1044300 784030 1126800 158660 1591700 718210 999000 978580 801170 871850 875720 1001200 3 3 3 3 3 3 3 3 3 3 3 271260000 173910000 97350000 11923 1194 11075 63502;63503;63504;63505;63506;63507 77049;77050;77051;77052;77053;77054 77050 6 LLAPPGRNPFVHELR Unmodified 1714.9631 0.96310799 2248 Q8NF37 LPCAT1 Lysophosphatidylcholine acyltransferase 1 yes yes 0 0 0 1 By MS/MS 3 0 1 1 49.456 49.099 4 1.8643E-09 16775 20211116_3441_TMUAki_TMT10x_S_F3 127.07 96.632 601090 930130 11799 1073400 555800 470170 567140 659530 618450 566630 762320 559770 868450 60197 1075900 533920 520440 576270 658230 632030 557230 730930 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 601090 930130 11799 1073400 555800 470170 567140 659530 618450 566630 762320 559770 868450 60197 1075900 533920 520440 576270 658230 632030 557230 730930 1 1 1 1 1 1 1 1 1 1 1 149840000 0 149840000 11924 2248 11076 63508 77055 77055 1 LLAQDQGQGAPLLEPAP Unmodified 1716.9046 0.90464964 1770 Q15102 PAFAH1B3 Platelet-activating factor acetylhydrolase IB subunit gamma yes yes 0 0 0 0 By MS/MS By MS/MS 2.89 0.994 1 2 3 3 7 2 76.743 76.687 2;3 1.613E-09 26888 20211116_3430_TMUAki_TMT10x_P_F3 108.56 93.873 12801000 21329000 108500 18499000 14475000 20256000 15651000 15218000 13476000 15123000 16757000 11919000 19892000 1070400 19098000 13908000 20414000 15747000 15724000 13921000 14774000 16064000 7 7 4 7 7 7 7 7 7 7 7 7208600 12003000 62711 10403000 7245300 13612000 8598000 8718400 7665300 8645400 9370800 6712100 11194000 623520 10774000 6982800 13559000 8621700 9109000 7899400 8446500 8986900 4 4 3 4 4 4 4 4 4 4 4 5592200 9326300 45792 8096000 7229800 6644100 7053500 6499800 5811000 6477400 7386700 5206500 8697900 446860 8324400 6925200 6854900 7125400 6615200 6021900 6327100 7076900 3 3 1 3 3 3 3 3 3 3 3 3148100000 2185300000 962790000 11925 1770 11077 63509;63510;63511;63512;63513;63514;63515;63516;63517 77056;77057;77058;77059;77060;77061;77062;77063;77064;77065 77058 10 LLAQLLGTSEEDSMVGTLYDK Oxidation (M) 2298.1301 0.13009406 2854 Q9HB07 C12orf10 UPF0160 protein MYG1, mitochondrial yes yes 0 0 1 0 By MS/MS 4 0 1 1 80.159 80.136 3 0.00090816 27173 20211116_3442_TMUAki_TMT10x_S_F4 61.222 50.883 1288600 2419300 53003 1788700 1594300 1907900 1865500 1504200 1573100 1509400 1816800 1200200 2255100 160510 1871100 1538800 1927300 1869000 1549900 1621800 1474000 1745100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1288600 2419300 53003 1788700 1594300 1907900 1865500 1504200 1573100 1509400 1816800 1200200 2255100 160510 1871100 1538800 1927300 1869000 1549900 1621800 1474000 1745100 1 1 1 1 1 1 1 1 1 1 1 305350000 0 305350000 11926 2854 11078 63518 77066 77066 2981 1 LLAQQHPPPDR Unmodified 1270.6782 0.67821894 3311 Q9Y520;Q9Y520-3;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520-7;Q9Y520-2 PRRC2C Protein PRRC2C yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 31.108 31.093 3 7.5035E-06 7108 20211116_3433_TMUAki_TMT10x_P_F5 110.93 77.523 258740 405450 993.4 384990 592070 476060 329640 239180 277030 220390 335840 240920 378250 27045 395560 561170 474040 346460 254570 286220 216020 322160 1 1 1 1 1 1 1 1 1 1 1 258740 405450 993.4 384990 592070 476060 329640 239180 277030 220390 335840 240920 378250 27045 395560 561170 474040 346460 254570 286220 216020 322160 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 41493000 41493000 0 11927 3311 11079 63519;63520 77067 77067 1 LLAQQSLNQQYLNHPPPVSR Unmodified 2302.2182 0.21821306 1488 Q01826;Q01826-2 SATB1 DNA-binding protein SATB1 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 51.872 51.642 3 1.6589E-51 14975 20211116_3440_TMUAki_TMT10x_S_F2 229.96 209.22 8001300 13441000 91085 14828000 10980000 13575000 9294100 8810800 8945000 7960700 10427000 7450000 12547000 703540 15010000 10485000 13799000 9504800 9173200 9167800 7809900 10013000 9 9 5 9 9 9 9 9 9 9 9 5510800 9080500 38757 10012000 8771400 11443000 7281600 5875000 5908800 5446000 7105800 5130900 8476500 475920 10169000 8371200 11444000 7421400 6241400 6113800 5336500 6817600 6 6 3 6 6 6 6 6 6 6 6 2490500 4360600 52328 4815900 2208300 2132000 2012600 2935800 3036100 2514700 3321100 2319100 4070600 227630 4840800 2114100 2355600 2083300 2931800 3054100 2473400 3194900 3 3 2 3 3 3 3 3 3 3 3 1279900000 732850000 547010000 11928 1488 11080 63521;63522;63523;63524 77068;77069;77070;77071;77072;77073;77074;77075;77076 77074 9 LLASANLEEVTMK Oxidation (M) 1433.7436 0.74358089 942 P35659;P35659-2 DEK Protein DEK yes no 0 0 1 0 By MS/MS By MS/MS 5.33 0.471 4 2 3 3 64.578 64.635 2;3 5.8974E-12 19532 20211116_3444_TMUAki_TMT10x_S_F5 128.57 111.13 20121000 34108000 341000 32132000 23899000 29093000 23126000 20818000 18007000 20534000 24341000 18737000 31819000 2007900 32874000 22914000 29640000 23340000 21576000 18768000 20066000 23285000 5 5 4 5 5 5 5 5 5 5 5 10634000 17556000 94844 16276000 13355000 20804000 13226000 10870000 9647400 10972000 12488000 9901400 16377000 977130 16762000 12806000 20691000 13312000 11556000 10072000 10712000 11958000 3 3 2 3 3 3 3 3 3 3 3 9487100 16552000 246160 15856000 10543000 8289300 9899900 9948100 8360000 9561300 11853000 8835200 15442000 1030700 16111000 10108000 8948600 10028000 10019000 8696200 9354000 11326000 2 2 2 2 2 2 2 2 2 2 2 2895100000 1825300000 1069800000 11929 942 11081 63525;63526;63527;63528;63529;63530 77077;77078;77079;77080;77081;77082 77081 1202 6 LLASANLEEVTMK Unmodified 1417.7487 0.74866627 942 P35659;P35659-2 DEK Protein DEK yes no 0 0 0 0 By MS/MS By MS/MS 6 0 3 1 2 69.919 69.834 2;3 2.9854E-18 21627 20211116_3434_TMUAki_TMT10x_P_F6 156.69 141.54 2865200 4480200 0 4338900 3523200 2746900 3027400 2389900 1847300 2581000 3086500 2667000 4180000 156670 4412500 3359900 2888600 3060200 2453600 1974900 2512900 2939100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2865200 4480200 0 4338900 3523200 2746900 3027400 2389900 1847300 2581000 3086500 2667000 4180000 156670 4412500 3359900 2888600 3060200 2453600 1974900 2512900 2939100 1 1 0 1 1 1 1 1 1 1 1 497310000 0 497310000 11930 942 11081 63531;63532;63533 77083;77084;77085 77083 3 LLASINSTVR Unmodified 1072.6241 0.6240581 1847 Q16531;Q16531-2 DDB1 DNA damage-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 53.345 53.154 2 6.4933E-11 16876 20211116_3429_TMUAki_TMT10x_P_F2 206.43 76.392 17420000 27256000 154130 29582000 26713000 29431000 19325000 21651000 20531000 19701000 23731000 16221000 25441000 1684600 30012000 25435000 29817000 20026000 22348000 20947000 19322000 22793000 5 5 4 5 5 5 5 5 5 5 5 10942000 16367000 145890 17608000 20389000 24063000 13700000 13701000 12662000 12248000 14811000 10189000 15277000 1175500 17972000 19390000 23883000 14214000 14409000 13003000 12022000 14221000 3 3 3 3 3 3 3 3 3 3 3 6478200 10888000 8233.3 11974000 6323900 5367300 5624700 7950400 7869200 7453700 8920200 6031600 10164000 509160 12040000 6044400 5933400 5811400 7938200 7944600 7300200 8572400 2 2 1 2 2 2 2 2 2 2 2 1059600000 710010000 349630000 11931 1847 11082 63534;63535;63536;63537;63538 77086;77087;77088;77089;77090 77087 5 LLASPSSR Unmodified 829.46577 0.46576654 1746 Q15003 NCAPH Condensin complex subunit 2 yes yes 0 0 0 0 By MS/MS 8 0 1 1 31.642 32.125 2 0.012621 6399 20211116_3447_TMUAki_TMT10x_S_F8 79.809 31.022 55526 114760 0 102310 61632 52634 70799 62473 71622 76470 73409 51694 107030 3843.9 104510 59271 56906 71361 63441 72890 74108 70760 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 55526 114760 0 102310 61632 52634 70799 62473 71622 76470 73409 51694 107030 3843.9 104510 59271 56906 71361 63441 72890 74108 70760 1 1 0 1 1 1 1 1 1 1 1 1570300 0 1570300 11932 1746 11083 63539 77091 77091 1 LLASTLVHSVK Unmodified 1166.7023 0.70230842 3018 Q9NYF8;Q9NYF8-2;Q9NYF8-4;Q9NYF8-3 BCLAF1 Bcl-2-associated transcription factor 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 55.198 54.811 3 0.011808 19102 20211116_3441_TMUAki_TMT10x_S_F3 63.408 43.796 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11933 3018 11084 63540 77092 77092 1 LLAVAATAPPDAPNREEVFDER Unmodified 2380.2023 0.20228822 717 P18206;P18206-2 VCL Vinculin yes no 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 59.912 60.036 3 4.8406E-12 19012 20211116_3442_TMUAki_TMT10x_S_F4 109.65 96.225 2311200 4234100 281230 4327700 3556000 5194600 3524400 3161200 3455800 2232700 2741700 2154000 3951200 471150 4421300 3425900 5192700 3574400 3288900 3493300 2218800 2666900 1 1 1 1 1 1 1 1 1 1 1 2311200 4234100 281230 4327700 3556000 5194600 3524400 3161200 3455800 2232700 2741700 2154000 3951200 471150 4421300 3425900 5192700 3574400 3288900 3493300 2218800 2666900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 899330000 899330000 0 11934 717 11085 63541;63542 77093;77094 77094 2 LLCEHFR Unmodified 973.48037 0.48037075 1603 Q13155;Q13155-2 AIMP2 Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 6 0.707 1 2 1 3 1 36.63 36.774 2;3 0.00049324 9900 20211116_3435_TMUAki_TMT10x_P_F7 138.85 104.04 1004400 1677700 13005 1719100 1680500 1728200 1259900 1231800 1237600 1143600 1367600 935230 1565600 101700 1751000 1601300 1748900 1299300 1274800 1264600 1120500 1315200 4 4 2 4 4 4 4 4 4 4 4 556540 913510 3341.9 974330 1217300 1271300 751720 658420 682520 617820 769740 518190 852630 55350 994120 1155500 1263000 784710 699150 700470 605070 739840 3 3 1 3 3 3 3 3 3 3 3 447820 764210 9663.1 744820 463130 456910 508210 573330 555070 525760 597840 417040 713010 46348 756900 445790 485840 514590 575630 564160 515440 575390 1 1 1 1 1 1 1 1 1 1 1 83240000 58216000 25024000 11935 1603 11086 63543;63544;63545;63546 77095;77096;77097;77098 77097 4 LLCGGGIAADR Unmodified 1101.5601 0.56007764 500 P05091;P05091-2 ALDH2 Aldehyde dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 44.81 44.944 2 2.2467E-11 11479 20211116_3444_TMUAki_TMT10x_S_F5 174.92 124.28 4194800 7020700 75593 8278800 7130800 7164100 5094400 5474100 5077200 4841900 5998300 3906300 6555700 459350 8340200 6790700 7329100 5273400 5632100 5198700 4754900 5757800 2 2 2 2 2 2 2 2 2 2 2 2115600 3525900 14039 4209300 5317800 5283200 3012000 3008100 2633400 2604100 2987600 1969900 3292600 233330 4262000 5041800 5264800 3164000 3161100 2708200 2560000 2871100 1 1 1 1 1 1 1 1 1 1 1 2079200 3494800 61554 4069500 1813000 1880900 2082500 2466100 2443900 2237800 3010700 1936400 3263100 226010 4078300 1748900 2064300 2109400 2471000 2490500 2194900 2886700 1 1 1 1 1 1 1 1 1 1 1 249820000 151120000 98703000 11936 500 11087 63547;63548;63549 77099;77100;77101 77100 3 LLCGLLAER Unmodified 1043.5798 0.57975045 665 P14174 MIF Macrophage migration inhibitory factor yes yes 0 0 0 0 By MS/MS By MS/MS 5.44 2.54 2 1 2 2 2 5 4 66.548 66.658 2 1.0963E-05 22478 20211116_3446_TMUAki_TMT10x_S_F7 159.2 94.63 43183000 74481000 121830 71918000 52398000 68999000 35715000 63823000 44156000 51193000 55447000 40205000 69489000 3303300 73505000 49796000 70356000 37361000 64774000 44953000 50260000 53138000 8 8 2 8 8 8 8 8 8 7 8 16153000 26989000 121830 25308000 23634000 43383000 16266000 22822000 18501000 20342000 21531000 15040000 25177000 1496400 26208000 22479000 42619000 16954000 24167000 18831000 19969000 20676000 4 4 2 4 4 4 4 4 4 4 4 27030000 47493000 0 46609000 28764000 25616000 19449000 41002000 25655000 30851000 33916000 25164000 44312000 1806900 47298000 27316000 27737000 20407000 40607000 26121000 30291000 32462000 4 4 0 4 4 4 4 4 4 3 4 14751000000 9179800000 5570900000 11937 665 11088 63550;63551;63552;63553;63554;63555;63556;63557;63558 77102;77103;77104;77105;77106;77107;77108;77109;77110 77109 9 LLDAVDTYIPVPAR Unmodified 1541.8453 0.84534384 1097 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 6 0.707 2 4 2 4 4 78.234 78.242 2;3 7.9586E-33 27542 20211116_3446_TMUAki_TMT10x_S_F7 223.14 158.23 63999000 107460000 177200 101770000 74558000 73950000 76850000 45890000 43891000 51939000 69396000 59588000 100250000 5224300 103810000 71532000 76421000 76812000 48255000 46999000 50477000 66154000 7 7 3 7 7 7 7 7 7 7 7 18537000 30873000 164520 28796000 15584000 26054000 18838000 13844000 13063000 15152000 21152000 17260000 28800000 1536300 29482000 15027000 26437000 18759000 14731000 13829000 14745000 20154000 3 3 2 3 3 3 3 3 3 3 3 45462000 76583000 12685 72975000 58974000 47896000 58013000 32046000 30828000 36786000 48244000 42328000 71446000 3688000 74327000 56505000 49984000 58053000 33524000 33170000 35732000 46000000 4 4 1 4 4 4 4 4 4 4 4 15830000000 5773400000 10056000000 11938 1097 11089 63559;63560;63561;63562;63563;63564;63565;63566 77111;77112;77113;77114;77115;77116;77117 77117 7 LLDDISNGYDDSEDGGHTLGDPSYSYETTEK Unmodified 3392.4328 0.43281384 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS 1 0 1 1 70.025 70.025 4 0.0022766 22244 20211116_3428_TMUAki_TMT10x_P_F1 47.757 41.529 3307400 5823300 157260 6171100 3885300 8170300 5195300 4199600 3736400 4128700 4264600 3080700 5435100 428850 6300900 3767800 8110800 5156100 4468100 3883800 4035200 4097500 1 1 1 1 1 1 1 1 1 1 1 3307400 5823300 157260 6171100 3885300 8170300 5195300 4199600 3736400 4128700 4264600 3080700 5435100 428850 6300900 3767800 8110800 5156100 4468100 3883800 4035200 4097500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1394700000 1394700000 0 11939 1057 11090 63567 77118 77118 1 LLDDLFR Unmodified 890.48617 0.48616764 3160 Q9UKV3;Q9UKV3-5;Q9UKV3-2;Q9UKV3-3 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 0 0 0 0 By MS/MS 4 0 1 1 76.949 76.972 2 0.01174 25442 20211116_3431_TMUAki_TMT10x_P_F4 94.539 57.445 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11940 3160 11091 63568 77119 77119 1 LLDDLFRK Unmodified 1018.5811 0.58113065 3160 Q9UKV3;Q9UKV3-5;Q9UKV3-2;Q9UKV3-3 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 68.336 68.322 3 0.00023782 21596 20211116_3436_TMUAki_TMT10x_P_F8 144.12 83.211 7397700 11844000 187800 13090000 10688000 12905000 5267400 9109800 10535000 9772000 9894100 6889400 11056000 834420 13263000 10123000 13073000 5789400 9473600 10464000 9516600 9564400 2 2 2 2 2 2 2 2 2 2 2 3389600 5301700 91213 5711300 6303400 9593100 1909700 3977300 4774700 4375600 4822300 3156700 4948600 406840 5855600 5939100 9407200 2255500 4339200 4733700 4257100 4650400 1 1 1 1 1 1 1 1 1 1 1 4008100 6542000 96583 7378500 4384400 3311600 3357700 5132500 5760500 5396400 5071900 3732700 6107500 427580 7407400 4184000 3665400 3533900 5134400 5730800 5259500 4914000 1 1 1 1 1 1 1 1 1 1 1 795900000 409870000 386030000 11941 3160 11092 63569;63570;63571 77120;77121;77122 77121 3 LLDEAIQAVK Unmodified 1098.6285 0.62847478 2541 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 0 0 0 0 By MS/MS By MS/MS 4.71 1.03 1 2 2 2 4 3 72.302 72.25 2 3.0931E-08 22576 20211116_3434_TMUAki_TMT10x_P_F6 125.48 60.175 26883000 43957000 293270 46903000 32183000 36335000 28725000 24116000 24270000 25032000 33655000 25032000 41027000 2516200 47482000 30785000 37393000 29180000 25163000 25219000 24410000 32175000 5 5 3 5 5 5 5 5 5 5 5 12242000 18590000 177640 19445000 16262000 22599000 14385000 10799000 10360000 11086000 14679000 11399000 17350000 1236800 19823000 15556000 22562000 14565000 11584000 10869000 10816000 14027000 2 2 2 2 2 2 2 2 2 2 2 14641000 25367000 115630 27458000 15921000 13737000 14340000 13316000 13910000 13945000 18975000 13633000 23678000 1279400 27659000 15229000 14831000 14615000 13579000 14350000 13594000 18148000 3 3 1 3 3 3 3 3 3 3 3 2846100000 1566000000 1280100000 11942 2541 11093 63572;63573;63574;63575;63576;63577;63578 77123;77124;77125;77126;77127;77128 77125 6 LLDEEEATDNDLR Unmodified 1531.7002 0.70019575 2301 Q8WUM4;Q8WUM4-2 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 By MS/MS 1 0 1 1 51.245 51.245 2 1.3951E-22 14580 20211116_3428_TMUAki_TMT10x_P_F1 208.82 156.24 1249800 2104100 43128 2689100 3787600 3859600 2134400 2213300 2309400 1763500 2105300 1164000 1965600 179350 2719500 3592700 3822700 2256900 2319900 2334500 1740800 2037200 1 1 1 1 1 1 1 1 1 1 1 1249800 2104100 43128 2689100 3787600 3859600 2134400 2213300 2309400 1763500 2105300 1164000 1965600 179350 2719500 3592700 3822700 2256900 2319900 2334500 1740800 2037200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 431170000 431170000 0 11943 2301 11094 63579 77129 77129 1 LLDEEISR Unmodified 973.50803 0.50802529 2535 Q96PU8;Q96PU8-9;Q96PU8-8;Q96PU8-6;Q96PU8-3;Q96PU8-5 QKI Protein quaking yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 46.337 46.283 2 0.0020032 14215 20211116_3429_TMUAki_TMT10x_P_F2 118.74 20.285 4084800 6847600 58692 7010900 4140300 3392500 3628300 5163900 5092500 4507400 5937500 3803700 6390100 382570 7086600 3959900 3719100 3752500 5141300 5146700 4429200 5701500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4084800 6847600 58692 7010900 4140300 3392500 3628300 5163900 5092500 4507400 5937500 3803700 6390100 382570 7086600 3959900 3719100 3752500 5141300 5146700 4429200 5701500 2 2 1 2 2 2 2 2 2 2 2 79256000 0 79256000 11944 2535 11095 63580;63581 77130;77131;77132 77130 3 LLDEVFFSEK Unmodified 1225.6231 0.62305505 809 P25789 PSMA4 Proteasome subunit alpha type-4 yes yes 0 0 0 0 By MS/MS By MS/MS 3.57 1.4 2 2 1 1 1 3 4 78.789 78.759 2 1.9462E-09 25977 20211116_3440_TMUAki_TMT10x_S_F2 182.39 123.58 28803000 45474000 137180 43986000 28529000 41151000 33000000 23896000 22771000 26571000 33783000 26819000 42426000 2410700 44936000 27469000 41709000 32923000 25247000 24004000 25841000 32249000 5 5 3 5 5 5 5 5 5 5 5 18045000 27882000 94829 27498000 16323000 29627000 19603000 14609000 13874000 17077000 21220000 16802000 26016000 1466000 28111000 15734000 29713000 19535000 15686000 14626000 16576000 20243000 3 3 2 3 3 3 3 3 3 3 3 10758000 17591000 42351 16488000 12206000 11525000 13397000 9286700 8897700 9494600 12563000 10017000 16410000 944660 16824000 11736000 11996000 13388000 9561300 9378900 9264300 12006000 2 2 1 2 2 2 2 2 2 2 2 3787800000 1688300000 2099500000 11945 809 11096 63582;63583;63584;63585;63586;63587;63588 77133;77134;77135;77136;77137 77136 5 LLDFGSLSNLQVTQPTVGMNFK Oxidation (M) 2424.2359 0.23589654 562 P08708 RPS17 40S ribosomal protein S17 yes yes 0 0 1 0 By MS/MS By MS/MS 2.62 0.611 2 7 20 22 7 85.837 85.805 2;3;4 1.9556E-67 28072 20211116_3430_TMUAki_TMT10x_P_F3 239.87 219.44 194490000 313250000 3932000 289310000 203130000 299110000 237370000 163620000 158990000 182360000 226930000 181110000 292200000 18337000 296980000 195820000 301060000 236560000 173750000 167590000 177330000 216810000 36 36 18 36 36 36 36 36 36 36 36 142900000 224090000 2623200 207850000 134010000 235250000 169790000 107610000 105410000 123740000 158020000 133070000 209030000 13445000 213600000 129500000 235100000 168360000 116340000 111920000 120190000 150810000 28 28 14 28 28 28 28 28 28 28 28 51584000 89163000 1308800 81457000 69121000 63860000 67578000 56005000 53585000 58620000 68910000 48039000 83170000 4892400 83381000 66312000 65965000 68195000 57417000 55669000 57144000 66000000 8 8 4 8 8 8 8 8 8 8 8 79185000000 39675000000 39510000000 11946 562 11097 63589;63590;63591;63592;63593;63594;63595;63596;63597;63598;63599;63600;63601;63602;63603;63604;63605;63606;63607;63608;63609;63610;63611;63612;63613;63614;63615;63616;63617 77138;77139;77140;77141;77142;77143;77144;77145;77146;77147;77148;77149;77150;77151;77152;77153;77154;77155;77156;77157;77158;77159;77160;77161;77162;77163;77164;77165;77166;77167;77168;77169;77170;77171;77172;77173;77174;77175;77176;77177;77178;77179 77150 530 42 LLDFGSLSNLQVTQPTVGMNFK Unmodified 2408.241 0.24098191 562 P08708 RPS17 40S ribosomal protein S17 yes yes 0 0 0 0 By MS/MS By MS/MS 3.12 0.781 4 6 6 8 8 80.482 80.461 2;3;4 1.7475E-114 27268 20211116_3442_TMUAki_TMT10x_S_F4 344.54 323.24 153120000 234990000 1098900 254480000 156300000 130830000 170630000 44178000 31389000 59062000 135120000 142560000 219350000 12030000 256390000 150180000 138960000 168010000 49735000 41707000 57070000 127130000 20 20 9 20 20 20 20 20 20 20 20 51335000 79094000 848010 81152000 50880000 63710000 59572000 19193000 15043000 23485000 46484000 47800000 73810000 4493400 82383000 49020000 64979000 58593000 21889000 18368000 22760000 43868000 9 9 4 9 9 9 9 9 9 9 9 101780000 155900000 250920 173330000 105420000 67120000 111050000 24985000 16347000 35577000 88632000 94764000 145540000 7536300 174000000 101160000 73982000 109420000 27846000 23339000 34310000 83262000 11 11 5 11 11 11 11 11 11 11 11 47371000000 26880000000 20490000000 11947 562 11097 63618;63619;63620;63621;63622;63623;63624;63625;63626;63627;63628;63629;63630;63631;63632;63633 77180;77181;77182;77183;77184;77185;77186;77187;77188;77189;77190;77191;77192;77193;77194;77195;77196;77197;77198;77199;77200 77200 21 LLDHMQNTPGFMYK 2 Oxidation (M) 1725.7855 0.78546248 2976 Q9NVP1 DDX18 ATP-dependent RNA helicase DDX18 yes yes 0 0 2 0 By MS/MS 7 0 1 1 47.971 48.454 3 0.0031579 15252 20211116_3446_TMUAki_TMT10x_S_F7 62.162 52.625 1297500 2124100 0 2577100 1228700 1103300 999180 2479500 2754100 1874600 2227700 1208100 1983700 104300 2575000 1172200 1245800 1079800 2433400 2706400 1855700 2165300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1297500 2124100 0 2577100 1228700 1103300 999180 2479500 2754100 1874600 2227700 1208100 1983700 104300 2575000 1172200 1245800 1079800 2433400 2706400 1855700 2165300 1 1 0 1 1 1 1 1 1 1 1 389050000 0 389050000 11948 2976 11098 63634 77201 77201 3059;3060 1 LLDISELDMVGAGR Oxidation (M) 1503.7603 0.76029359 2800 Q9H3P2 NELFA Negative elongation factor A yes yes 0 0 1 0 By MS/MS 4 0 1 1 75.916 75.946 2 5.2811E-06 25028 20211116_3431_TMUAki_TMT10x_P_F4 113.44 83.671 1293400 2572800 25363 2359500 1530800 3658600 2091000 2112900 2167400 2059600 2279400 1204500 2399900 134200 2441500 1483400 3612300 2094100 2224700 2205500 2013700 2195300 1 1 1 1 1 1 1 1 1 1 1 1293400 2572800 25363 2359500 1530800 3658600 2091000 2112900 2167400 2059600 2279400 1204500 2399900 134200 2441500 1483400 3612300 2094100 2224700 2205500 2013700 2195300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 274460000 274460000 0 11949 2800 11099 63635 77202 77202 2957 1 LLDIVAR Unmodified 798.49634 0.49633839 1578 Q12931;Q12931-2 TRAP1 Heat shock protein 75 kDa, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 6 0.707 1 2 1 2 2 58.716 58.915 2 0.014354 17487 20211116_3445_TMUAki_TMT10x_S_F6 94.006 17.16 8593900 13384000 8510.5 14475000 10191000 10513000 8382400 9475600 9519700 9390200 10525000 8001600 12492000 705340 14630000 9724400 10931000 8632400 9683900 9670600 9174500 10122000 3 3 1 3 3 3 3 3 3 3 3 2454100 3724000 0 4077700 3976400 4684300 2636200 2770900 2803200 2672200 2946700 2284800 3476200 203080 4144000 3777700 4691600 2749200 2910900 2849600 2613900 2838100 1 1 0 1 1 1 1 1 1 1 1 6139800 9659700 8510.5 10397000 6214800 5828600 5746300 6704700 6716500 6718000 7578600 5716700 9016200 502260 10486000 5946700 6239200 5883200 6773100 6821000 6560600 7284100 2 2 1 2 2 2 2 2 2 2 2 1011200000 477640000 533540000 11950 1578 11100 63636;63637;63638;63639 77203;77204;77205 77204 3 LLDLVQQSCNYK Unmodified 1479.7392 0.73916421 1245 P55769 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 6.11 2.77 2 3 4 5 4 70.236 70.253 2;3 1.4572E-38 22407 20211116_3436_TMUAki_TMT10x_P_F8 285.88 229.15 38428000 67608000 215280 67227000 57956000 75004000 47981000 60379000 52474000 54927000 56198000 35779000 63084000 3385500 68726000 55315000 75601000 49330000 61964000 53318000 53870000 54097000 8 8 5 8 8 8 8 8 8 8 8 20676000 35388000 175890 35829000 38532000 57847000 32931000 33576000 28855000 29787000 30473000 19252000 33023000 1975200 36850000 36806000 57027000 33570000 35249000 29591000 29248000 29346000 4 4 3 4 4 4 4 4 4 4 4 17752000 32220000 39396 31398000 19424000 17157000 15050000 26804000 23619000 25141000 25725000 16528000 30062000 1410300 31876000 18509000 18574000 15760000 26715000 23728000 24622000 24751000 4 4 2 4 4 4 4 4 4 4 4 5354100000 3143700000 2210400000 11951 1245 11101 63640;63641;63642;63643;63644;63645;63646;63647;63648 77206;77207;77208;77209;77210;77211;77212;77213;77214;77215;77216 77211 11 LLDMDGIIVEK Oxidation (M) 1260.6635 0.66353965 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 1 0 By MS/MS By MS/MS 3.25 0.829 1 1 2 3 1 65.752 65.496 2;3 0.0091081 21211 20211116_3442_TMUAki_TMT10x_S_F4 70.399 49.026 4447500 7898300 25336 8128800 5013200 4638100 4318700 6829300 7431600 6417800 7104800 4141200 7370800 400260 8224200 4790900 4989500 4513300 6820600 7412600 6284900 6863900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4447500 7898300 25336 8128800 5013200 4638100 4318700 6829300 7431600 6417800 7104800 4141200 7370800 400260 8224200 4790900 4989500 4513300 6820600 7412600 6284900 6863900 1 1 1 1 1 1 1 1 1 1 1 1160600000 651230000 509390000 11952 1684 11102 63649;63650;63651;63652 77217;77218 77218 2253 2 LLDMDGIIVEK Unmodified 1244.6686 0.66862503 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 By MS/MS 3 0 1 1 77.387 77.289 2 0.0020983 28135 20211116_3441_TMUAki_TMT10x_S_F3 80.24 52.031 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11953 1684 11102 63653 77219 77219 1 LLDNWDTLASTLSK Unmodified 1575.8144 0.81443765 42 CON__P15497 yes yes 0 0 0 0 By MS/MS By MS/MS 7.38 0.696 1 3 4 3 5 79.863 79.877 2;3 4.2077E-19 26355 20211116_3436_TMUAki_TMT10x_P_F8 174.89 152.25 + 31833000 49167000 398630 48128000 33786000 40980000 41033000 22242000 23145000 29482000 36476000 29642000 45874000 2961800 49065000 32597000 41768000 40689000 23777000 24802000 28496000 34775000 8 8 6 8 8 8 8 8 8 8 8 16000000 23841000 361740 23145000 20973000 29950000 24321000 11346000 11486000 14237000 18204000 14901000 22244000 1733300 23763000 20216000 29673000 24098000 12561000 12485000 13786000 17353000 4 4 4 4 4 4 4 4 4 4 4 15833000 25325000 36890 24983000 12813000 11030000 16712000 10896000 11659000 15245000 18272000 14742000 23630000 1228500 25302000 12381000 12095000 16591000 11215000 12317000 14710000 17421000 4 4 2 4 4 4 4 4 4 4 4 5048000000 2701300000 2346700000 11954 42 11103 63654;63655;63656;63657;63658;63659;63660;63661 77220;77221;77222;77223;77224;77225;77226;77227;77228 77221 9 LLDPIREK Unmodified 982.58113 0.58113065 1219 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 45.704 45.869 3 0.021769 12112 20211116_3445_TMUAki_TMT10x_S_F6 60.717 22.167 2902200 4160400 0 4476700 2561900 2540100 3100300 3142600 3865200 3312700 4099100 2702200 3883300 229010 4515600 2469600 2720600 3140300 3169800 3907000 3228400 3947000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2902200 4160400 0 4476700 2561900 2540100 3100300 3142600 3865200 3312700 4099100 2702200 3883300 229010 4515600 2469600 2720600 3140300 3169800 3907000 3228400 3947000 1 1 0 1 1 1 1 1 1 1 1 178590000 0 178590000 11955 1219 11104 63662;63663 77229;77230 77230 2 LLDPSTPVHILR Unmodified 1359.7874 0.78743503 3007 Q9NXF7 DCAF16 DDB1- and CUL4-associated factor 16 yes yes 0 0 0 0 By MS/MS 8 0 1 1 56.515 56.477 3 1.0276E-12 16238 20211116_3447_TMUAki_TMT10x_S_F8 142.08 113.88 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11956 3007 11105 63664 77231 77231 1 LLDQIVEK Unmodified 956.55425 0.5542472 2408;2407 Q96AE4-2;Q96AE4 FUBP1 Far upstream element-binding protein 1 no no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 62.966 63.075 2 0.0019276 19981 20211116_3433_TMUAki_TMT10x_P_F5 114.84 54.405 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11957 2408;2407 11106 63665;63666 77232;77233 77232 2 LLDRDACDTVR Unmodified 1332.6456 0.64559818 3035 Q9NZL4;Q9NZL4-3;Q9NZL4-2 HSPBP1 Hsp70-binding protein 1 yes no 0 0 0 1 By MS/MS 3 0 1 1 34.896 34.657 3 5.6854E-12 10879 20211116_3441_TMUAki_TMT10x_S_F3 140.01 116.4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11958 3035 11107 63667 77234 77234 1 LLDSSTVTHLFK Unmodified 1359.7398 0.73981614 1280 P60900;P60900-2 PSMA6 Proteasome subunit alpha type-6 yes no 0 0 0 0 By MS/MS 8 0 1 1 67.591 67.712 3 5.628E-09 21346 20211116_3436_TMUAki_TMT10x_P_F8 141.13 114.53 4385700 7202700 45215 6944700 6113400 10661000 5901600 6606000 6237900 6480200 5931400 4083900 6719900 429940 7158500 5859200 10541000 6007800 6917500 6320400 6334100 5731300 1 1 1 1 1 1 1 1 1 1 1 4385700 7202700 45215 6944700 6113400 10661000 5901600 6606000 6237900 6480200 5931400 4083900 6719900 429940 7158500 5859200 10541000 6007800 6917500 6320400 6334100 5731300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 408150000 408150000 0 11959 1280 11108 63668 77235 77235 1 LLDSVEQDFHLEIAK Unmodified 1755.9043 0.90431529 1979 Q6IBS0;Q9NR96-4 TWF2 Twinfilin-2 yes no 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 56.718 56.654 4 0.010842 16260 20211116_3447_TMUAki_TMT10x_S_F8 54.598 34.491 17647000 24740000 49707 27972000 13726000 14322000 14695000 12837000 12028000 12178000 20377000 16430000 23097000 1327900 28104000 13181000 15399000 14772000 13107000 12649000 11921000 19398000 5 5 2 5 5 5 5 5 5 5 5 5437900 5560400 0 6870900 4317000 5997500 4029100 3568500 3164000 3202200 6953900 5062600 5193400 362610 6903900 4127400 6109200 4075100 3739900 3391200 3142600 6590900 1 1 0 1 1 1 1 1 1 1 1 12209000 19179000 49707 21101000 9409400 8324100 10666000 9268900 8863500 8975500 13423000 11368000 17904000 965260 21200000 9053200 9289400 10697000 9367500 9257800 8778100 12807000 4 4 2 4 4 4 4 4 4 4 4 1789900000 486930000 1303000000 11960 1979 11109 63669;63670;63671 77236;77237;77238;77239 77238 4 LLDSVPPTAISHFK Unmodified 1523.8348 0.83477916 2918 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 0 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 62.542 62.725 3 3.222E-19 19384 20211116_3428_TMUAki_TMT10x_P_F1 169.62 149.78 69593000 112790000 702460 111230000 84538000 122070000 78885000 87269000 84981000 86073000 90480000 64801000 105240000 6406600 113740000 80944000 122910000 80500000 90449000 86382000 84112000 87112000 15 15 11 15 15 15 15 15 15 15 15 43718000 70064000 382170 68305000 60082000 96069000 54581000 55591000 52833000 54091000 56220000 40707000 65371000 3988100 70222000 57480000 95247000 55597000 58519000 53945000 52890000 54128000 9 9 6 9 9 9 9 9 9 9 9 25875000 42725000 320300 42921000 24455000 26003000 24304000 31678000 32148000 31982000 34260000 24095000 39868000 2418500 43520000 23464000 27662000 24903000 31930000 32436000 31222000 32984000 6 6 5 6 6 6 6 6 6 6 6 8103900000 4001000000 4102900000 11961 2918 11110 63672;63673;63674;63675;63676;63677 77240;77241;77242;77243;77244;77245;77246;77247;77248;77249;77250;77251;77252;77253;77254 77241 15 LLDTMVDTFLQK Unmodified 1422.7429 0.74285261 1991 Q6P1K2;Q6P1K2-3;Q6P1K2-6;Q6P1K2-2;Q6P1K2-5 PMF1 Polyamine-modulated factor 1 yes no 0 0 0 0 By MS/MS 8 0 1 1 81.756 81.76 3 0.00055557 27113 20211116_3436_TMUAki_TMT10x_P_F8 78.692 55.456 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11962 1991 11111 63678 77255 77255 1 LLDVVHPAAK Unmodified 1061.6233 0.62332982 2609 Q99832;Q99832-3 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 By MS/MS By MS/MS 6.29 1.03 2 2 2 1 3 4 48.05 48.33 3 0.00037693 14655 20211116_3435_TMUAki_TMT10x_P_F7 96.171 57.815 34951000 55998000 102670 58408000 52615000 51105000 38511000 43357000 40801000 40085000 48393000 32542000 52261000 3111600 59306000 50093000 52338000 39872000 44375000 41677000 39284000 46448000 7 7 1 7 7 7 7 7 7 7 7 15113000 23530000 0 23284000 28300000 31950000 17704000 19084000 17939000 17183000 19543000 14071000 21955000 1398700 23900000 26867000 31725000 18519000 19996000 18297000 16860000 18803000 4 4 0 4 4 4 4 4 4 4 4 19838000 32467000 102670 35124000 24315000 19154000 20807000 24272000 22862000 22902000 28850000 18471000 30305000 1712900 35406000 23226000 20613000 21353000 24379000 23380000 22423000 27645000 3 3 1 3 3 3 3 3 3 3 3 6299600000 3052500000 3247200000 11963 2609 11112 63679;63680;63681;63682;63683;63684;63685 77256;77257;77258;77259;77260;77261;77262;77263 77259 8 LLDYVPIGPR Unmodified 1141.6495 0.64954457 1048 P46459;P46459-2 NSF Vesicle-fusing ATPase yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 70.686 70.636 2 0.00010597 22614 20211116_3436_TMUAki_TMT10x_P_F8 122.13 87.035 32111000 53692000 163630 51093000 35612000 45254000 36397000 32574000 31561000 36580000 39297000 29899000 50090000 2761000 52220000 34169000 46177000 36729000 33879000 32594000 35561000 37669000 5 5 2 5 5 5 5 5 5 5 5 13276000 21592000 0 20274000 13842000 23780000 14800000 12290000 12276000 14581000 15673000 12361000 20143000 1054500 20828000 13293000 23751000 14884000 13144000 12720000 14146000 15014000 2 2 0 2 2 2 2 2 2 2 2 18835000 32099000 163630 30820000 21770000 21473000 21598000 20284000 19285000 21999000 23624000 17538000 29947000 1706400 31392000 20877000 22425000 21845000 20734000 19874000 21415000 22655000 3 3 2 3 3 3 3 3 3 3 3 1113000000 537030000 576000000 11964 1048 11113 63686;63687;63688 77264;77265;77266;77267;77268;77269 77266 6 LLEACTFHKP Unmodified 1214.6118 0.61177885 49 CON__Q29443;CON__Q0IIK2 yes no 0 0 0 1 By MS/MS 7 0 1 1 49.391 49.873 3 0.0010051 15787 20211116_3446_TMUAki_TMT10x_S_F7 78.655 59.524 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11965 49 11114 63689 77270 77270 1 LLEAFHNQGPVIK Unmodified 1464.8089 0.80889876 3246 Q9Y2R9 MRPS7 28S ribosomal protein S7, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 57.979 58.05 3 2.6519E-06 16857 20211116_3447_TMUAki_TMT10x_S_F8 108.72 83.925 20952000 33010000 649100 42427000 31913000 29913000 23792000 13711000 11995000 13065000 22339000 19513000 30837000 2495500 42430000 30435000 30881000 24193000 14739000 13086000 12787000 21229000 3 3 3 3 3 3 3 3 3 3 3 15072000 23365000 483040 30858000 26845000 25566000 19424000 9705000 7993200 8938500 15549000 14037000 21830000 1864600 30872000 25583000 26015000 19737000 10645000 8900100 8761400 14766000 2 2 2 2 2 2 2 2 2 2 2 5880200 9645200 166060 11569000 5068100 4346300 4368300 4005800 4001900 4126400 6789800 5476300 9007200 630900 11558000 4852000 4865600 4456200 4093700 4186200 4025100 6463600 1 1 1 1 1 1 1 1 1 1 1 878720000 283250000 595470000 11966 3246 11115 63690;63691 77271;77272;77273 77273 3 LLEAQSHFR Unmodified 1099.5774 0.57744226 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.67 0.745 3 2 1 5 1 35.983 36.089 2;3 1.0899E-05 9566 20211116_3433_TMUAki_TMT10x_P_F5 112.11 84.853 2078500 3248200 6533.5 3186500 2882000 2655700 2010500 1641600 1880500 1748100 2384900 1934900 3030700 139470 3247200 2738600 2715400 2080800 1723400 1936700 1702900 2285000 4 4 1 4 4 4 4 4 4 4 4 1650300 2612900 6533.5 2468300 2437800 2327600 1627800 956700 1220300 1195800 1721600 1536300 2437600 107230 2526200 2314500 2349100 1680900 1049000 1277000 1158100 1645200 3 3 1 3 3 3 3 3 3 3 3 428160 635340 0 718230 444190 328110 382640 684910 660260 552230 663340 398630 593150 32248 721030 424130 366340 399940 674390 659660 544800 639810 1 1 0 1 1 1 1 1 1 1 1 104850000 79456000 25398000 11967 1663 11116 63692;63693;63694;63695;63696;63697 77274;77275;77276;77277;77278 77274 5 LLECPHLNVR Unmodified 1249.6601 0.66012603 2289 Q8TEX9;Q8TEX9-2 IPO4 Importin-4 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 43.179 43.535 3 8.6088E-07 13130 20211116_3446_TMUAki_TMT10x_S_F7 151.22 114.83 1530400 2679500 18898 2818000 1434500 1276600 1251800 1896900 1969200 1690300 2250500 1425100 2500800 143150 2842000 1372000 1409600 1301500 1891100 1981900 1659400 2162300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1530400 2679500 18898 2818000 1434500 1276600 1251800 1896900 1969200 1690300 2250500 1425100 2500800 143150 2842000 1372000 1409600 1301500 1891100 1981900 1659400 2162300 2 2 2 2 2 2 2 2 2 2 2 291650000 0 291650000 11968 2289 11117 63698;63699;63700;63701 77279;77280;77281;77282 77282 4 LLEEALLR Unmodified 955.57023 0.57023162 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 3.22 1.31 1 2 2 2 2 5 4 66.119 65.924 2 0.00045019 20812 20211116_3440_TMUAki_TMT10x_S_F2 152.47 85.477 41394000 65804000 0 67656000 51012000 63956000 48627000 51449000 48335000 52742000 54705000 38538000 61409000 3104400 68834000 48823000 65102000 49440000 52980000 49411000 51457000 52574000 8 8 0 8 8 8 8 8 8 8 8 19553000 29807000 0 31462000 26520000 41067000 25131000 23245000 22556000 24157000 24909000 18202000 27819000 1325200 32123000 25368000 40843000 25484000 24561000 23143000 23555000 23956000 4 4 0 4 4 4 4 4 4 4 4 21841000 35997000 0 36194000 24492000 22890000 23496000 28204000 25779000 28585000 29796000 20335000 33590000 1779100 36711000 23454000 24259000 23956000 28419000 26268000 27902000 28619000 4 4 0 4 4 4 4 4 4 4 4 6353000000 3757100000 2595900000 11969 1433 11118 63702;63703;63704;63705;63706;63707;63708;63709;63710 77283;77284;77285;77286;77287;77288;77289;77290;77291;77292 77288 10 LLEEENQESLR Unmodified 1358.6678 0.66777341 1080 P48681 NES Nestin yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 44.453 44.243 2 7.6769E-56 11724 20211116_3428_TMUAki_TMT10x_P_F1 282.06 217.57 628970 989570 0 1453500 444120 418570 390160 825410 1147100 698620 1020000 585610 925100 46679 1434500 424300 499390 422010 814900 1129300 687530 987930 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 628970 989570 0 1453500 444120 418570 390160 825410 1147100 698620 1020000 585610 925100 46679 1434500 424300 499390 422010 814900 1129300 687530 987930 1 1 0 1 1 1 1 1 1 1 1 36552000 0 36552000 11970 1080 11119 63711;63712 77293;77294 77293 2 LLEEHAK Unmodified 838.45487 0.45486751 1157 P51572-2;P51572 BCAP31 B-cell receptor-associated protein 31 yes no 0 0 0 0 By MS/MS 3 0 1 1 33.482 33.243 3 0.00086848 10315 20211116_3441_TMUAki_TMT10x_S_F3 127.12 87.455 704320 1179600 18152 1132000 727470 691090 951660 556500 621370 605100 891720 655930 1100500 75634 1151600 704270 728210 943360 574060 656190 588970 851840 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 704320 1179600 18152 1132000 727470 691090 951660 556500 621370 605100 891720 655930 1100500 75634 1151600 704270 728210 943360 574060 656190 588970 851840 1 1 1 1 1 1 1 1 1 1 1 30407000 0 30407000 11971 1157 11120 63713 77295 77295 1 LLEEKDPVPLFK Unmodified 1426.8072 0.80716742 1590 Q13084 MRPL28 39S ribosomal protein L28, mitochondrial yes yes 0 0 0 1 By MS/MS 6 0 1 1 68.305 68.229 3 0.045589 21328 20211116_3445_TMUAki_TMT10x_S_F6 49.12 25.134 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11972 1590 11121 63714 77296 77296 1 LLEELEEGQK Unmodified 1186.6081 0.60813326 1627;1833 Q13404;Q13404-7;Q13404-2;Q13404-1;Q13404-8;Q15819 UBE2V1;UBE2V2 Ubiquitin-conjugating enzyme E2 variant 1;Ubiquitin-conjugating enzyme E2 variant 2 no no 0 0 0 0 By MS/MS By MS/MS 1.8 0.748 4 4 2 5 5 66.188 65.984 2;3 1.9769E-19 20481 20211116_3428_TMUAki_TMT10x_P_F1 254.82 212.48 19199000 29961000 134670 38010000 30006000 26828000 19725000 20274000 23625000 20471000 26618000 17877000 27987000 1868600 38041000 28521000 27873000 20666000 20950000 23970000 19985000 25585000 6 6 6 6 6 6 6 6 6 6 6 8120800 12574000 45869 16010000 20882000 18681000 10617000 8739400 10147000 8886800 11041000 7561600 11746000 894750 16130000 19768000 18642000 11291000 9391800 10375000 8673300 10623000 2 2 2 2 2 2 2 2 2 2 2 11078000 17387000 88803 22001000 9123700 8147800 9108100 11535000 13478000 11584000 15577000 10315000 16241000 973830 21911000 8753200 9231000 9374900 11558000 13594000 11312000 14962000 4 4 4 4 4 4 4 4 4 4 4 3788200000 2335600000 1452600000 11973 1627;1833 11122 63715;63716;63717;63718;63719;63720;63721;63722;63723;63724 77297;77298;77299;77300;77301;77302;77303;77304;77305 77298 9 LLEEQLQHEISNK Unmodified 1579.8206 0.82058566 2107 Q86UP2;Q86UP2-3;Q86UP2-4;Q86UP2-2 KTN1 Kinectin yes no 0 0 0 0 By MS/MS By matching 3.33 0.471 2 1 2 1 58.608 58.28 3 6.0115E-05 19468 20211116_3430_TMUAki_TMT10x_P_F3 95.651 80.263 2675300 4344000 100590 4733700 4126100 6058900 3432400 4123500 3631600 3178100 3376400 2491700 4054900 335860 4821500 3945000 6047200 3524100 4261900 3676800 3142900 3265000 1 1 1 1 1 1 1 1 1 1 1 2675300 4344000 100590 4733700 4126100 6058900 3432400 4123500 3631600 3178100 3376400 2491700 4054900 335860 4821500 3945000 6047200 3524100 4261900 3676800 3142900 3265000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 359830000 252090000 107740000 11974 2107 11123 63725;63726;63727 77306;77307 77306 2 LLEETQLDMNEFDNLLQPIIDTCTK Oxidation (M) 3008.4359 0.43585449 2149 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein yes yes 0 0 1 0 By MS/MS 2 0 1 1 81.85 81.848 3 2.9631E-12 28481 20211116_3429_TMUAki_TMT10x_P_F2 118.22 104.77 812230 1244300 30984 1080800 658360 1741600 900680 1135700 1228100 1207200 1131100 756490 1160400 94060 1124000 639240 1719900 911070 1187400 1231600 1176100 1094100 1 1 1 1 1 1 1 1 1 1 1 812230 1244300 30984 1080800 658360 1741600 900680 1135700 1228100 1207200 1131100 756490 1160400 94060 1124000 639240 1719900 911070 1187400 1231600 1176100 1094100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 182100000 182100000 0 11975 2149 11124 63728 77308 77308 2610 1 LLEFYDATAHFAK Unmodified 1524.7613 0.76127986 1447 P83436 COG7 Conserved oligomeric Golgi complex subunit 7 yes yes 0 0 0 0 By MS/MS 8 0 1 1 73.258 73.1 3 0.00084128 23007 20211116_3447_TMUAki_TMT10x_S_F8 75.739 61.32 4925200 8508400 4898.6 7601400 6662900 5803000 5756200 5532600 5150300 5734500 6237200 4585900 7935800 437240 7791900 6366200 6016600 5867400 5644900 5304600 5592300 5983200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4925200 8508400 4898.6 7601400 6662900 5803000 5756200 5532600 5150300 5734500 6237200 4585900 7935800 437240 7791900 6366200 6016600 5867400 5644900 5304600 5592300 5983200 2 2 2 2 2 2 2 2 2 2 2 398090000 0 398090000 11976 1447 11125 63729 77309;77310 77309 2 LLEGEEER Unmodified 973.47164 0.47163978 748;1505 P20700;Q03252 LMNB1;LMNB2 Lamin-B1;Lamin-B2 no no 0 0 0 0 By MS/MS By MS/MS 2 1.1 2 2 1 2 3 36.025 35.975 2 0.00041357 10376 20211116_3439_TMUAki_TMT10x_S_F1 142.36 71.228 5320900 8860500 2441.1 8032400 7491000 7558700 5997800 3862200 4848800 4403400 6211300 4953900 8264700 413730 8245700 7141400 7646400 6126400 4129600 5031400 4278300 5949600 4 4 1 4 4 4 4 4 4 4 4 3383300 5446700 2441.1 5025900 5506900 5852300 3664000 2414000 2928600 2872400 3789100 3149900 5080800 285240 5169300 5232300 5833600 3790100 2641600 3042100 2786400 3628600 2 2 1 2 2 2 2 2 2 2 2 1937700 3413700 0 3006500 1984000 1706400 2333900 1448300 1920100 1531000 2422200 1803900 3183800 128490 3076400 1909000 1812800 2336300 1488000 1989300 1491800 2321000 2 2 0 2 2 2 2 2 2 2 2 549400000 307320000 242090000 11977 748;1505 11126 63730;63731;63732;63733;63734 77311;77312;77313;77314;77315 77313 5 LLEGEEERLK Unmodified 1214.6507 0.65066678 748;1505 P20700;Q03252 LMNB1;LMNB2 Lamin-B1;Lamin-B2 no no 0 0 0 1 By MS/MS By MS/MS 2.25 0.829 1 1 2 3 1 45.194 45.04 3 0.0019698 15157 20211116_3441_TMUAki_TMT10x_S_F3 79.286 49.36 3657600 5849000 22492 6705000 7568800 6331800 4412000 4864000 5202800 4111200 5276300 3405800 5460900 378980 6774200 7179300 6440400 4664900 4996900 5261000 4046300 5087600 2 2 2 2 2 2 2 2 2 2 2 2355700 3448400 17628 4157000 5655200 5174900 3025000 3057700 3327300 2620300 3335800 2193500 3220400 257940 4206000 5357400 5161500 3215300 3202600 3372000 2577100 3217700 1 1 1 1 1 1 1 1 1 1 1 1302000 2400600 4863.7 2548100 1913600 1156900 1387000 1806300 1875600 1491000 1940500 1212300 2240600 121040 2568200 1821900 1279000 1449600 1794300 1889000 1469200 1869900 1 1 1 1 1 1 1 1 1 1 1 309750000 255820000 53922000 11978 748;1505 11127 63735;63736;63737;63738 77316;77317 77317 2 LLEGEESR Unmodified 931.46108 0.4610751 561;995 P08670;P17661;P05787;P08729;Q9NSB2;CON__Q9DCV7;CON__Q3KNV1;CON__P08729;CON__P05787;CON__Q9H552;CON__Q9NSB2;CON__Q6ISB0;P05787-2;P41219;P41219-2 VIM;DES;KRT8;KRT7;KRT84;PRPH Vimentin;Desmin;Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 7;Keratin, type II cuticular Hb4;Peripherin no no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 34.947 34.962 2 0.00044997 7792 20211116_3440_TMUAki_TMT10x_S_F2 152.41 81.279 3427800 5778600 57500 5652500 4198100 3767800 3921700 3316500 3693000 3115600 4458600 3191900 5391600 336600 5747200 4021100 3944500 3985300 3388800 3794200 3051200 4277300 7 7 4 7 7 7 7 7 7 7 7 800630 1335900 33381 1295200 1485800 1516200 957800 839440 939050 739910 1105000 745710 1246400 107080 1327500 1413400 1515800 998560 884670 962030 726730 1060800 1 1 1 1 1 1 1 1 1 1 1 2627200 4442700 24119 4357300 2712300 2251600 2963900 2477100 2754000 2375700 3353500 2446200 4145200 229520 4419700 2607700 2428700 2986800 2504100 2832200 2324400 3216500 6 6 3 6 6 6 6 6 6 6 6 108250000 33430000 74819000 11979 561;995 11128 63739;63740;63741 77318;77319;77320;77321;77322;77323;77324 77322 7 LLEIVSYK Unmodified 963.56408 0.56408361 2387 Q93009;Q93009-3 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 70.118 70.385 2 0.00043444 21956 20211116_3447_TMUAki_TMT10x_S_F8 160.75 67.484 9414600 14968000 99163 15448000 14436000 21521000 12626000 13790000 14012000 12505000 13423000 8766700 13968000 943280 15816000 13803000 21375000 12945000 14372000 14173000 12266000 12967000 2 2 2 2 2 2 2 2 2 2 2 9414600 14968000 99163 15448000 14436000 21521000 12626000 13790000 14012000 12505000 13423000 8766700 13968000 943280 15816000 13803000 21375000 12945000 14372000 14173000 12266000 12967000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 842990000 637760000 205230000 11980 2387 11129 63742;63743;63744;63745 77325;77326;77327 77327 3 LLELDSFLK Unmodified 1076.6118 0.61176208 1307 P61289;P61289-2;P61289-3 PSME3 Proteasome activator complex subunit 3 yes no 0 0 0 0 By MS/MS By MS/MS 5.83 1.07 1 1 2 2 4 2 79.368 79.376 2 6.1567E-06 25854 20211116_3445_TMUAki_TMT10x_S_F6 164.57 114.44 35516000 51269000 187490 61989000 29862000 27525000 33758000 13322000 15550000 16836000 30991000 33068000 47880000 2746500 61967000 28723000 29848000 33475000 14367000 17164000 16298000 29418000 4 4 2 4 4 4 4 4 4 4 4 10227000 15229000 47382 17350000 8342600 11969000 8619600 4931000 5589700 5829600 9842400 9522400 14218000 861390 17470000 8008800 12367000 8634900 5395600 5970000 5656400 9362900 2 2 1 2 2 2 2 2 2 2 2 25289000 36040000 140110 44639000 21519000 15556000 25139000 8390900 9960100 11006000 21149000 23546000 33661000 1885100 44497000 20714000 17480000 24840000 8971200 11194000 10641000 20055000 2 2 1 2 2 2 2 2 2 2 2 2953700000 1138100000 1815600000 11981 1307 11130 63746;63747;63748;63749;63750;63751 77328;77329;77330;77331;77332 77331 5 LLELFPVNR Unmodified 1099.639 0.63897988 3349 Q9Y6E2 BZW2 Basic leucine zipper and W2 domain-containing protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 2.87 2 2 1 1 3 3 76.868 76.854 2 1.8696E-07 25236 20211116_3440_TMUAki_TMT10x_S_F2 203.19 133.99 42727000 70811000 184230 63230000 50030000 62816000 51198000 41517000 38951000 42539000 51020000 39782000 66046000 3512600 65035000 47992000 63539000 51492000 43317000 40590000 41503000 48844000 7 7 3 7 7 7 7 7 7 7 7 22322000 35841000 68918 31503000 22260000 39178000 26687000 21100000 19336000 21268000 24853000 20783000 33428000 1793300 32560000 21451000 39033000 26611000 22371000 20189000 20765000 23804000 3 3 1 3 3 3 3 3 3 3 3 20405000 34969000 115310 31727000 27771000 23637000 24510000 20417000 19614000 21270000 26167000 18999000 32618000 1719300 32475000 26541000 24507000 24881000 20947000 20401000 20739000 25039000 4 4 2 4 4 4 4 4 4 4 4 3712200000 1949000000 1763200000 11982 3349 11131 63752;63753;63754;63755;63756;63757 77333;77334;77335;77336;77337;77338;77339 77338 7 LLELGPKPEVAQQTR Unmodified 1677.9414 0.94136949 1207 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 1 By MS/MS By MS/MS 7 0 3 2 1 52.429 53.026 3 0.011786 17097 20211116_3446_TMUAki_TMT10x_S_F7 55.094 38.351 3011400 5640500 83082 6436900 3672700 2844700 2733400 5923900 6110200 5091100 5284700 2804500 5266200 336360 6456800 3503000 3188700 2926300 5842700 6039000 5006500 5123500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3011400 5640500 83082 6436900 3672700 2844700 2733400 5923900 6110200 5091100 5284700 2804500 5266200 336360 6456800 3503000 3188700 2926300 5842700 6039000 5006500 5123500 1 1 1 1 1 1 1 1 1 1 1 1011200000 583710000 427480000 11983 1207 11132 63758;63759;63760 77340;77341 77341 2 LLELLPGK Unmodified 881.5586 0.5586043 2202 Q8N684;Q8N684-2;Q8N684-3 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes no 0 0 0 0 By MS/MS By MS/MS 7.75 0.433 1 3 1 3 73.81 73.833 2;3 0.0014326 23355 20211116_3447_TMUAki_TMT10x_S_F8 121.99 54.957 22360000 33716000 409890 37974000 28615000 33754000 24550000 27456000 27101000 28146000 28164000 20822000 31477000 2284900 38376000 27358000 34505000 25194000 28254000 27497000 27460000 27136000 4 4 3 4 4 4 4 4 4 4 4 10505000 15071000 273470 17616000 14531000 21499000 12710000 12833000 12768000 12676000 12578000 9783100 14072000 1143700 17850000 13901000 21468000 12989000 13480000 12980000 12387000 12140000 2 2 1 2 2 2 2 2 2 2 2 11855000 18645000 136420 20357000 14084000 12255000 11840000 14624000 14333000 15469000 15586000 11039000 17404000 1141200 20526000 13457000 13038000 12204000 14774000 14517000 15073000 14997000 2 2 2 2 2 2 2 2 2 2 2 2051800000 769160000 1282600000 11984 2202 11133 63761;63762;63763;63764 77342;77343;77344;77345;77346 77345 5 LLEMNLMHAPQVADAILGNQMFTHYDR 3 Oxidation (M) 3175.4889 0.48890989 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 3 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 2 3 72.02 72.088 4 0.00076556 24885 20211116_3446_TMUAki_TMT10x_S_F7 59.893 45.997 23563000 37403000 662860 37393000 28333000 34086000 29907000 24418000 22855000 26622000 30337000 21944000 34901000 2112900 38098000 27245000 34711000 30035000 25380000 23826000 25910000 29033000 8 8 5 8 8 8 8 8 8 8 8 8533800 13024000 213820 12422000 8836100 14964000 11374000 7680000 6798400 7920000 9441500 7947400 12150000 624270 12753000 8549300 14924000 11263000 8183300 7210300 7725200 9026100 2 2 1 2 2 2 2 2 2 2 2 15029000 24379000 449030 24971000 19497000 19122000 18533000 16738000 16057000 18702000 20895000 13997000 22751000 1488700 25345000 18696000 19788000 18773000 17197000 16615000 18184000 20007000 6 6 4 6 6 6 6 6 6 6 6 7033300000 2825700000 4207600000 11985 1471 11134 63765;63766;63767;63768;63769 77347;77348;77349;77350;77351;77352;77353 77351 1978;1979;1980 7 LLEMNLMHAPQVADAILGNQMFTHYDR Oxidation (M) 3143.4991 0.49908064 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 1 0 By MS/MS 8 0 1 1 78.139 78.145 4 9.8586E-09 25641 20211116_3436_TMUAki_TMT10x_P_F8 86.304 74.673 1995800 3036300 3015.3 3089400 1882300 2957900 2200700 1672900 1381200 1726500 2206500 1858300 2833400 166690 3146000 1813000 2992600 2190200 1767300 1470300 1684000 2103000 1 1 1 1 1 1 1 1 1 1 1 1995800 3036300 3015.3 3089400 1882300 2957900 2200700 1672900 1381200 1726500 2206500 1858300 2833400 166690 3146000 1813000 2992600 2190200 1767300 1470300 1684000 2103000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1949100000 1949100000 0 11986 1471 11134 63770 77354 77354 1978;1979;1980 1 LLEMNLMHAPQVADAILGNQMFTHYDR 2 Oxidation (M) 3159.494 0.49399527 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 2 0 By MS/MS 7 0.816 1 1 1 3 76.975 76.966 4 2.6104E-06 24882 20211116_3445_TMUAki_TMT10x_S_F6 77.984 66.567 12383000 23662000 84907 20235000 18593000 17622000 17735000 15107000 14961000 15327000 17813000 11530000 22066000 793930 20846000 17809000 18056000 17948000 15493000 15443000 14960000 17095000 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12383000 23662000 84907 20235000 18593000 17622000 17735000 15107000 14961000 15327000 17813000 11530000 22066000 793930 20846000 17809000 18056000 17948000 15493000 15443000 14960000 17095000 4 4 2 4 4 4 4 4 4 4 4 6200600000 0 6200600000 11987 1471 11134 63771;63772;63773 77355;77356;77357;77358 77355 1978;1979;1980 4 LLENPTINHQK Unmodified 1305.7041 0.70409934 1754 Q15021 NCAPD2 Condensin complex subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 38.463 38.527 3 0.0026558 9108 20211116_3444_TMUAki_TMT10x_S_F5 68.515 51.942 6983400 12043000 71816 13811000 14995000 15520000 9615800 9577500 9597500 8759800 9583500 6502700 11244000 749770 13990000 14246000 15572000 10034000 10013000 9764200 8589000 9245300 4 4 3 4 4 4 4 4 4 4 4 5626400 9901400 64082 11391000 13763000 14472000 8192500 8220700 8157200 7532900 7829900 5239200 9244600 631810 11562000 13060000 14412000 8600200 8653100 8288500 7385400 7563400 2 2 1 2 2 2 2 2 2 2 2 1357000 2141500 7734.1 2420000 1231400 1048700 1423400 1356800 1440300 1226900 1753600 1263600 1999300 117960 2428600 1186100 1159900 1434300 1360100 1475600 1203600 1681900 2 2 2 2 2 2 2 2 2 2 2 55199000 25556000 29643000 11988 1754 11135 63774;63775 77359;77360;77361;77362 77361 4 LLEPFEVR Unmodified 1001.5546 0.55458155 2303 Q8WUY1 THEM6 Protein THEM6 yes yes 0 0 0 0 By MS/MS 4 0 1 1 64.445 64.287 2 0.0095711 20756 20211116_3442_TMUAki_TMT10x_S_F4 83.265 30.098 3385500 5857400 0 5667200 3879600 3082700 3346500 4060000 3366800 3450700 4464600 3152000 5464900 259420 5756200 3704700 3321800 3423000 4060400 3463200 3395200 4272800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3385500 5857400 0 5667200 3879600 3082700 3346500 4060000 3366800 3450700 4464600 3152000 5464900 259420 5756200 3704700 3321800 3423000 4060400 3463200 3395200 4272800 1 1 0 1 1 1 1 1 1 1 1 327440000 0 327440000 11989 2303 11136 63776 77363 77363 1 LLEPLVTQVTTLVNTNSK Unmodified 1969.1096 0.10955703 922 P35221;P35221-2 CTNNA1 Catenin alpha-1 yes no 0 0 0 0 By MS/MS By MS/MS 2.86 0.639 2 4 1 4 3 80.568 80.54 2;3 8.964E-58 28463 20211116_3430_TMUAki_TMT10x_P_F3 249.66 8.1441 12877000 19059000 78509 18995000 11685000 15855000 14001000 8071400 7892400 8985800 13049000 11989000 17784000 992530 19336000 11259000 16171000 13892000 8626700 8479500 8738300 12428000 5 5 2 5 5 5 5 5 5 5 5 9285000 13441000 78509 13495000 7573600 12112000 9806100 5280400 5777900 6412500 9624700 8645500 12542000 774980 13743000 7320000 12271000 9705300 5747400 6190800 6216100 9165500 4 4 2 4 4 4 4 4 4 4 4 3592100 5617700 0 5500000 4111600 3743700 4195200 2791000 2114500 2573300 3424200 3343900 5241400 217550 5593000 3938800 3900700 4186600 2879300 2288700 2522200 3262700 1 1 0 1 1 1 1 1 1 1 1 4596300000 1862800000 2733400000 11990 922 11137 63777;63778;63779;63780;63781;63782;63783 77364;77365;77366;77367;77368;77369;77370 77365 7 LLEPVDHGKIEYEPFRK Unmodified 2069.0946 0.094575672 2049 Q7L014 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 0 0 0 2 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 52.376 52.68 5 9.7881E-30 16313 20211116_3435_TMUAki_TMT10x_P_F7 195.66 173.72 14760000 24237000 93100 25934000 26413000 32559000 18603000 21529000 22869000 20453000 20237000 13744000 22622000 1473700 26436000 25136000 32512000 19410000 22413000 22985000 20020000 19603000 3 3 3 3 3 3 3 3 3 3 3 11780000 18562000 47826 20694000 22848000 28605000 15530000 16087000 18058000 15525000 15213000 10969000 17328000 1176300 21079000 21727000 28372000 16214000 16971000 18159000 15186000 14763000 2 2 2 2 2 2 2 2 2 2 2 2979600 5674800 45274 5239600 3565200 3953500 3072600 5441500 4811000 4927800 5023800 2774700 5293600 297430 5356800 3408900 4140300 3196300 5442100 4825800 4833900 4839700 1 1 1 1 1 1 1 1 1 1 1 2198600000 1794900000 403660000 11991 2049 11138 63784;63785;63786 77371;77372;77373 77371 3 LLEPVLLLGK Unmodified 1093.7111 0.71108219 1340 P62249 RPS16 40S ribosomal protein S16 yes yes 0 0 0 0 By MS/MS By MS/MS 3.02 2.21 15 36 18 2 3 10 55 29 57.421 57.373 2;3 3.2661E-11 26140 20211116_3428_TMUAki_TMT10x_P_F1 183.65 127.97 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11992 1340 11139 63787;63788;63789;63790;63791;63792;63793;63794;63795;63796;63797;63798;63799;63800;63801;63802;63803;63804;63805;63806;63807;63808;63809;63810;63811;63812;63813;63814;63815;63816;63817;63818;63819;63820;63821;63822;63823;63824;63825;63826;63827;63828;63829;63830;63831;63832;63833;63834;63835;63836;63837;63838;63839;63840;63841;63842;63843;63844;63845;63846;63847;63848;63849;63850;63851;63852;63853;63854;63855;63856;63857;63858;63859;63860;63861;63862;63863;63864;63865;63866;63867;63868;63869;63870 77374;77375;77376;77377;77378;77379;77380;77381;77382;77383;77384;77385;77386;77387;77388;77389;77390;77391;77392;77393;77394;77395;77396;77397;77398;77399;77400;77401;77402;77403;77404;77405;77406;77407;77408;77409;77410;77411;77412;77413;77414;77415;77416;77417;77418;77419;77420;77421;77422;77423;77424;77425;77426;77427;77428;77429;77430;77431;77432;77433;77434;77435;77436;77437;77438;77439;77440;77441;77442;77443;77444;77445;77446;77447;77448;77449;77450;77451;77452;77453;77454;77455;77456;77457 77374 84 LLEQALK Unmodified 813.496 0.49600404 2581 Q99543;Q99543-2 DNAJC2 DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed yes no 0 0 0 0 By MS/MS 6 0 1 1 55.101 55.19 2 0.079169 15943 20211116_3445_TMUAki_TMT10x_S_F6 61.962 1.526 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11993 2581 11140 63871 77458 77458 1 LLEQALVIEEQLRR Unmodified 1708.9836 0.98356866 1735;1571 Q14839;Q14839-2;Q8TDI0;Q12873;Q12873-3;Q12873-2 CHD4;CHD5;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3 no no 0 0 0 1 By MS/MS By MS/MS 5.71 1.03 1 2 2 2 4 3 77.608 77.626 3 5.254E-30 24789 20211116_3434_TMUAki_TMT10x_P_F6 214.53 180.65 28230000 46840000 537550 42419000 30412000 47511000 35766000 31124000 30516000 32493000 35686000 26288000 43690000 2759600 43662000 29320000 47719000 35837000 32513000 31458000 31678000 34265000 8 8 4 8 8 8 8 8 8 8 8 18518000 28644000 389250 26325000 16640000 34852000 22105000 20108000 18799000 20353000 22165000 17245000 26719000 1847100 27147000 16115000 34648000 22034000 21196000 19388000 19868000 21277000 5 5 3 5 5 5 5 5 5 5 5 9712100 18196000 148300 16093000 13771000 12659000 13661000 11017000 11717000 12141000 13522000 9043300 16971000 912550 16515000 13205000 13071000 13803000 11318000 12069000 11811000 12988000 3 3 1 3 3 3 3 3 3 3 3 6532700000 3628300000 2904400000 11994 1735;1571 11141 63872;63873;63874;63875;63876;63877;63878 77459;77460;77461;77462;77463;77464;77465;77466 77461 8 LLEQGLR Unmodified 827.4865 0.48650199 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.894 2 1 2 3 2 43.301 43.31 2 0.0051023 11980 20211116_3433_TMUAki_TMT10x_P_F5 110.14 0 10925000 17017000 26429 18263000 19241000 16817000 11031000 10991000 11399000 10249000 12847000 10171000 15883000 948820 18521000 18238000 17090000 11630000 11446000 11632000 10040000 12349000 5 5 3 5 5 5 5 5 5 5 5 8978800 13767000 14664 14791000 17456000 15279000 9350000 8509400 8840100 8111700 10111000 8359500 12850000 778790 15024000 16528000 15383000 9892200 8981500 9060700 7938700 9714600 3 3 1 3 3 3 3 3 3 3 3 1945700 3249300 11765 3471900 1785100 1537600 1681000 2481300 2558900 2137400 2736200 1811800 3032700 170030 3497200 1709800 1706900 1737800 2464900 2571100 2101700 2634000 2 2 2 2 2 2 2 2 2 2 2 1020700000 609900000 410820000 11995 1092 11142 63879;63880;63881;63882;63883 77467;77468;77469;77470;77471 77469 5 LLEQILVAENRDR Unmodified 1567.8682 0.86820455 2017 Q6SZW1;Q6SZW1-2 SARM1 Sterile alpha and TIR motif-containing protein 1 yes no 0 0 0 1 By MS/MS 4 0 1 1 65.45 65.543 3 5.0371E-06 20750 20211116_3431_TMUAki_TMT10x_P_F4 100.13 82.759 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11996 2017 11143 63884 77472 77472 1 LLEQYKEESK Unmodified 1265.6503 0.65033243 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 1 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 46.701 46.861 3 0.01554 12284 20211116_3444_TMUAki_TMT10x_S_F5 59.796 34.078 15502000 26335000 93374 27429000 19781000 18366000 18209000 15832000 17773000 16038000 20116000 14434000 24577000 1401900 27769000 18931000 19212000 18539000 16231000 18183000 15655000 19333000 3 3 2 3 3 3 3 3 3 3 3 5335600 9071300 0 9061100 9151000 9806300 6788500 5278800 5992700 5366400 6758300 4967700 8464400 465540 9255600 8713000 9842300 6984800 5598200 6158600 5237500 6495800 1 1 0 1 1 1 1 1 1 1 1 10167000 17264000 93374 18368000 10630000 8559300 11421000 10553000 11780000 10671000 13358000 9466700 16113000 936380 18514000 10218000 9369500 11554000 10632000 12024000 10417000 12837000 2 2 2 2 2 2 2 2 2 2 2 497050000 211090000 285960000 11997 1474 11144 63885;63886;63887 77473;77474 77474 2 LLEQYKEESKK Unmodified 1393.7453 0.74529545 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 2 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 43.756 44.071 4 1.958E-05 13389 20211116_3446_TMUAki_TMT10x_S_F7 108.3 90.201 43273000 68623000 155230 59328000 78186000 77853000 53174000 52164000 53003000 50328000 56388000 40293000 63997000 4168500 61458000 74345000 77592000 55239000 54279000 54049000 49229000 54291000 6 6 5 6 6 6 6 6 6 6 6 30507000 46668000 95756 41295000 61104000 65033000 35580000 36468000 37569000 35530000 38929000 28405000 43526000 2994200 42862000 57950000 64145000 37486000 38492000 38181000 34739000 37511000 4 4 3 4 4 4 4 4 4 4 4 12767000 21955000 59471 18034000 17082000 12820000 17594000 15696000 15435000 14798000 17460000 11887000 20472000 1174300 18596000 16395000 13447000 17753000 15787000 15868000 14490000 16780000 2 2 2 2 2 2 2 2 2 2 2 2774700000 1655400000 1119300000 11998 1474 11145 63888;63889;63890;63891 77475;77476;77477;77478;77479;77480 77480 6 LLESEAVNENLRK Unmodified 1513.81 0.81002097 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4;Q7Z4S6-6 KIF21A Kinesin-like protein KIF21A yes no 0 0 0 1 By MS/MS By MS/MS 5 0.707 1 2 1 1 3 47.042 47.21 3 7.8612E-10 13648 20211116_3442_TMUAki_TMT10x_S_F4 138.55 117.3 18870000 29911000 62734 36274000 31609000 27728000 19900000 23736000 23945000 19758000 26149000 17570000 27934000 1666200 36429000 30009000 28685000 20923000 24215000 24261000 19460000 25157000 5 5 1 5 5 5 5 5 5 5 5 8920900 13871000 62734 16313000 22920000 20233000 11933000 10877000 10740000 9305800 11893000 8306600 12953000 984310 16528000 21703000 20160000 12641000 11484000 11019000 9153200 11437000 2 2 1 2 2 2 2 2 2 2 2 9949500 16040000 0 19961000 8689500 7495400 7967300 12859000 13205000 10452000 14257000 9263000 14981000 681840 19900000 8305600 8525200 8281500 12731000 13242000 10307000 13720000 3 3 0 3 3 3 3 3 3 3 3 1110400000 623140000 487290000 11999 2082 11146 63892;63893;63894;63895 77481;77482;77483;77484;77485 77483 5 LLESLQENHFQEDEQFLGAVMPR Oxidation (M) 2745.3068 0.30682965 1127 P49903;P49903-2;P49903-4 SEPHS1 Selenide, water dikinase 1 yes no 0 0 1 0 By MS/MS 2 0 1 1 77.059 77.018 3 1.4694E-05 25264 20211116_3440_TMUAki_TMT10x_S_F2 77.575 70.215 1606300 3066500 0 2688000 2723600 2357200 2582400 2612700 2131000 2744600 2668900 1495500 2860000 138280 2764000 2607300 2427500 2612800 2647500 2206800 2675100 2557900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1606300 3066500 0 2688000 2723600 2357200 2582400 2612700 2131000 2744600 2668900 1495500 2860000 138280 2764000 2607300 2427500 2612800 2647500 2206800 2675100 2557900 1 1 0 1 1 1 1 1 1 1 1 595550000 0 595550000 12000 1127 11147 63896 77486 77486 1486 1 LLETCSIALVGK Unmodified 1302.7217 0.72172323 709 P17812;P17812-2 CTPS1 CTP synthase 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.4 0.663 1 4 5 6 4 69.691 69.896 2;3 1.7687E-30 22220 20211116_3436_TMUAki_TMT10x_P_F8 266.24 221.08 37272000 60663000 212050 61151000 41969000 51161000 40004000 34119000 25396000 34345000 41691000 34705000 56606000 3198500 62200000 40196000 52353000 40229000 35556000 27054000 33534000 39714000 7 7 4 7 7 7 7 7 7 7 7 20142000 31925000 174280 31660000 24671000 35377000 23071000 18117000 13599000 18362000 21000000 18755000 29788000 1792400 32373000 23620000 35423000 23192000 19298000 14511000 17923000 20029000 4 4 2 4 4 4 4 4 4 4 4 17130000 28738000 37769 29491000 17298000 15784000 16934000 16002000 11798000 15983000 20691000 15950000 26818000 1406200 29828000 16576000 16930000 17037000 16258000 12542000 15610000 19685000 3 3 2 3 3 3 3 3 3 3 3 5439900000 3329700000 2110200000 12001 709 11148 63897;63898;63899;63900;63901;63902;63903;63904;63905;63906 77487;77488;77489;77490;77491;77492;77493;77494;77495;77496 77490 10 LLETHIHNQGLAAIEK Unmodified 1785.9737 0.97373226 1655 Q13616 CUL1 Cullin-1 yes yes 0 0 0 0 By matching By MS/MS 5.5 0.5 1 1 1 1 48.11 48.275 4 5.0537E-06 13182 20211116_3445_TMUAki_TMT10x_S_F6 100.23 80.389 938020 1635000 13759 1668900 886950 804330 726120 1189000 1276000 1246900 1439100 873490 1525800 89876 1687200 847230 881370 761970 1191200 1279900 1215400 1383200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 938020 1635000 13759 1668900 886950 804330 726120 1189000 1276000 1246900 1439100 873490 1525800 89876 1687200 847230 881370 761970 1191200 1279900 1215400 1383200 1 1 1 1 1 1 1 1 1 1 1 195740000 95464000 100280000 12002 1655 11149 63907;63908 77497 77497 1 LLETTDRPDGHQNNLR Unmodified 1877.9344 0.93438664 1739 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 1 By MS/MS By MS/MS 3.14 1.25 1 1 2 2 1 5 2 32.724 32.622 3;4 3.6282E-70 7429 20211116_3431_TMUAki_TMT10x_P_F4 313.87 276.08 6629800 9762700 53738 12255000 17839000 14118000 8131800 7570200 9842300 6909200 9886300 6172800 9118900 679300 12354000 16859000 14120000 8809000 8007500 9939600 6775100 9535600 9 9 6 9 9 9 9 9 9 9 9 5422600 8077400 50052 10134000 16837000 13230000 7117400 6327600 8233400 5832200 8194700 5048800 7544800 585790 10240000 15898000 13132000 7762200 6767000 8325900 5716400 7906300 7 7 5 7 7 7 7 7 7 7 7 1207300 1685300 3685.4 2120300 1002100 887530 1014400 1242600 1608900 1077000 1691600 1124100 1574200 93511 2113900 960950 988170 1046700 1240500 1613700 1058700 1629300 2 2 1 2 2 2 2 2 2 2 2 1700300000 1481000000 219240000 12003 1739 11150 63909;63910;63911;63912;63913;63914;63915 77498;77499;77500;77501;77502;77503;77504;77505;77506 77503 9 LLEVDLK Unmodified 828.49567 0.49566969 1613 Q13247;Q13247-3;Q13247-2 SRSF6 Serine/arginine-rich splicing factor 6 yes no 0 0 0 0 By MS/MS By MS/MS 4.55 0.988 2 3 4 2 6 5 63.215 63.146 2 0.002137 20363 20211116_3442_TMUAki_TMT10x_S_F4 129.4 0 87257000 135550000 524140 139760000 110700000 119140000 93451000 102020000 96486000 100150000 112950000 81243000 126490000 7362400 141970000 105690000 122260000 95787000 104530000 98609000 97891000 108450000 9 9 6 9 9 9 9 9 9 9 9 35901000 51861000 144780 56406000 52504000 67929000 37524000 42054000 39699000 41369000 47392000 33426000 48409000 3016900 57395000 49955000 67909000 38913000 44043000 40565000 40432000 45479000 3 3 2 3 3 3 3 3 3 3 3 51356000 83685000 379370 83356000 58192000 51207000 55927000 59964000 56787000 58783000 65555000 47818000 78086000 4345500 84579000 55739000 54346000 56875000 60490000 58044000 57459000 62967000 6 6 4 6 6 6 6 6 6 6 6 3408600000 1715800000 1692800000 12004 1613 11151 63916;63917;63918;63919;63920;63921;63922;63923;63924;63925;63926 77507;77508;77509;77510;77511;77512;77513;77514;77515;77516;77517;77518 77514 12 LLEVEHPAAK Unmodified 1105.6132 0.61315906 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 By MS/MS By MS/MS 4.38 1.32 1 1 2 2 2 3 5 39.941 39.986 3 0.00044379 9593 20211116_3444_TMUAki_TMT10x_S_F5 93.448 65.05 22323000 35615000 151530 35363000 37491000 36113000 26613000 22410000 24418000 22708000 28911000 20784000 33231000 2002000 36105000 35670000 36435000 27495000 23485000 25097000 22165000 27750000 9 9 5 9 9 9 9 9 9 9 9 15836000 24456000 79323 24746000 29593000 29880000 18537000 15375000 17036000 16014000 20238000 14744000 22821000 1392100 25301000 28090000 29797000 19334000 16383000 17510000 15614000 19424000 5 5 2 5 5 5 5 5 5 5 5 6486200 11158000 72209 10617000 7897600 6233300 8076000 7034700 7382400 6693600 8673100 6039700 10410000 609850 10804000 7580500 6638500 8161000 7101800 7586500 6551400 8326700 4 4 3 4 4 4 4 4 4 4 4 3090900000 1860200000 1230700000 12005 712 11152 63927;63928;63929;63930;63931;63932;63933;63934 77519;77520;77521;77522;77523;77524;77525;77526;77527 77526 9 LLEVLSGERLPKPTK Unmodified 1678.9982 0.99815609 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 2 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 62.4 62.07 4 3.8307E-19 22115 20211116_3441_TMUAki_TMT10x_S_F3 166.9 120.49 8407200 14556000 84029 14924000 12127000 17423000 10542000 12789000 15920000 13793000 12363000 7828500 13584000 813420 15236000 11592000 17491000 10942000 13267000 15834000 13429000 12037000 2 2 1 2 2 2 2 2 2 2 2 5306200 9224500 0 9318500 10459000 14300000 7923400 8125400 9641900 8923000 7680400 4940500 8607800 498090 9574200 9964300 14122000 8222900 8596800 9664200 8681800 7469700 1 1 0 1 1 1 1 1 1 1 1 3101000 5331800 84029 5605400 1667300 3122700 2618500 4663500 6278200 4869900 4683000 2888000 4976100 315330 5662000 1627700 3369000 2719600 4669900 6170300 4747700 4566900 1 1 1 1 1 1 1 1 1 1 1 1725100000 1202200000 522910000 12006 1475 11153 63935;63936;63937 77528;77529 77529 2 LLEVQGSRPGK Unmodified 1182.6721 0.67207093 1333 P62136 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit yes yes 0 0 0 1 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 36.804 37.111 3 0.015638 8242 20211116_3434_TMUAki_TMT10x_P_F6 59.13 34.275 4682600 7137200 195200 7782200 5904400 6263000 5288700 2817200 2733000 2947900 4956400 4361400 6662200 584520 7870800 5657600 6396600 5317600 3042100 2971100 2873700 4712400 5 5 4 5 5 5 5 5 5 5 5 3818700 5848600 173630 6335800 5172300 5709100 4492500 2429200 2387600 2487600 4087500 3556900 5459200 494640 6419800 4952700 5781000 4527300 2637200 2581400 2427200 3890500 4 4 3 4 4 4 4 4 4 4 4 863860 1288700 21574 1446400 732060 553930 796220 387930 345400 460290 868850 804500 1203100 89881 1451100 704860 615620 790330 404960 389690 446560 821940 1 1 1 1 1 1 1 1 1 1 1 338470000 190080000 148390000 12007 1333 11154 63938;63939;63940;63941 77530;77531;77532 77530 3 LLEVYDQLFK Unmodified 1266.686 0.68598966 354 O75694;O75694-2 NUP155 Nuclear pore complex protein Nup155 yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 80.375 80.39 2 3.3345E-10 28401 20211116_3446_TMUAki_TMT10x_S_F7 176.83 97.9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12008 354 11155 63942;63943;63944 77533;77534;77535 77534 3 LLFGSGLPPALF Unmodified 1230.7012 0.70124579 2398 Q969U7;Q969U7-2 PSMG2 Proteasome assembly chaperone 2 yes no 0 0 0 0 By MS/MS By MS/MS 4.11 1.85 2 2 2 1 1 1 4 5 84.573 84.57 2 1.2991E-11 28490 20211116_3431_TMUAki_TMT10x_P_F4 166.17 141.83 7417100 12605000 8718.3 12045000 9266400 10696000 9404700 7523300 7146700 7944600 9086500 6905100 11760000 520650 12307000 8880800 10908000 9462500 7821900 7438200 7741800 8705400 12 12 5 12 12 12 12 12 12 12 12 3205100 5434500 420.35 5034500 3491100 5919700 3692700 3393300 3121800 3477400 3841600 2983900 5069500 231320 5177600 3350000 5919200 3717500 3580100 3226500 3392800 3683600 6 6 2 6 6 6 6 6 6 6 6 4212000 7170600 8298 7010500 5775300 4776100 5712000 4130000 4024900 4467200 5244900 3921200 6690300 289330 7129800 5530700 4988900 5745000 4241800 4211700 4349000 5021800 6 6 3 6 6 6 6 6 6 6 6 3365400000 1412100000 1953300000 12009 2398 11156 63945;63946;63947;63948;63949;63950;63951;63952;63953 77536;77537;77538;77539;77540;77541;77542;77543;77544;77545;77546;77547 77538 12 LLFPAVDDNLLK Unmodified 1356.7653 0.76530261 1500 Q02880;Q02880-2 TOP2B DNA topoisomerase 2-beta yes no 0 0 0 0 By MS/MS By MS/MS 6.36 1.11 4 4 3 3 8 6 79.098 79.107 2;3 3.7254E-18 25378 20211116_3434_TMUAki_TMT10x_P_F6 218.52 169.1 36754000 60153000 161530 57709000 37979000 44131000 46866000 28967000 30547000 35988000 43468000 34219000 56120000 2684200 58842000 36614000 45455000 46568000 30428000 32249000 34859000 41532000 7 7 3 7 7 7 7 7 7 7 7 11226000 16617000 0 16164000 10846000 16018000 11536000 8140000 8721800 9699200 12829000 10452000 15503000 753720 16520000 10405000 16150000 11578000 8720400 9141800 9408500 12249000 2 2 0 2 2 2 2 2 2 2 2 25528000 43537000 161530 41545000 27133000 28113000 35330000 20828000 21825000 26289000 30639000 23767000 40617000 1930500 42322000 26209000 29305000 34990000 21707000 23107000 25450000 29283000 5 5 3 5 5 5 5 5 5 5 5 7767400000 2755600000 5011900000 12010 1500 11157 63954;63955;63956;63957;63958;63959;63960;63961;63962;63963;63964;63965;63966;63967 77548;77549;77550;77551;77552;77553;77554;77555;77556;77557;77558 77549 11 LLFPPKDDHTLK Unmodified 1422.7871 0.78710068 625 P11388;P11388-2;P11388-3;P11388-4 TOP2A DNA topoisomerase 2-alpha yes no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 50.575 50.851 4 0.00023712 15601 20211116_3435_TMUAki_TMT10x_P_F7 89.629 60.289 9330600 16293000 62765 17289000 10899000 11012000 8686700 15211000 14301000 14573000 14108000 8687500 15207000 761190 17474000 10392000 11700000 9100700 15235000 14296000 14259000 13616000 3 3 1 3 3 3 3 3 3 3 3 1864600 3287100 0 3240000 4321100 5022600 2561100 2867300 2883400 2754700 2705700 1736000 3067000 175790 3335300 4098100 4958300 2699800 3020700 2912900 2695000 2615500 1 1 0 1 1 1 1 1 1 1 1 7466100 13006000 62765 14049000 6577500 5989700 6125600 12344000 11417000 11818000 11403000 6951500 12140000 585400 14138000 6294100 6741800 6400900 12214000 11383000 11564000 11000000 2 2 1 2 2 2 2 2 2 2 2 688560000 420950000 267620000 12011 625 11158 63968;63969 77559;77560;77561 77559 3 LLFQEAHNGPAVEAQEEEEEQDHGVGR Unmodified 3017.3751 0.37512022 2063 Q7L7X3;Q7L7X3-2;Q7L7X3-3 TAOK1 Serine/threonine-protein kinase TAO1 yes no 0 0 0 0 By MS/MS 1 0 1 1 49.013 48.762 4 4.0448E-25 15564 20211116_3439_TMUAki_TMT10x_S_F1 156.78 153.16 503130 956030 30414 1148200 454250 469660 428190 940570 907620 780270 880300 468690 892800 69374 1147600 436750 530900 450540 927750 901400 768660 850040 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 503130 956030 30414 1148200 454250 469660 428190 940570 907620 780270 880300 468690 892800 69374 1147600 436750 530900 450540 927750 901400 768660 850040 1 1 1 1 1 1 1 1 1 1 1 844950000 0 844950000 12012 2063 11159 63970 77562 77562 1 LLFSHDLVSGR Unmodified 1242.6721 0.67207093 2748 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 53.284 53.217 3 1.2973E-14 14930 20211116_3447_TMUAki_TMT10x_S_F8 180.66 156.5 8758600 13851000 374220 16116000 9799600 12081000 9383200 10559000 9759900 10066000 11790000 8158000 12933000 1089500 16220000 9408500 12522000 9551200 10798000 9984600 9851300 11311000 7 7 7 7 7 7 7 7 7 7 7 2754800 4466200 109170 4936000 4060600 6088800 3629500 3626200 3108600 3354300 3767100 2565900 4169200 348420 5019600 3889300 6076500 3688000 3803100 3208600 3287200 3613600 2 2 2 2 2 2 2 2 2 2 2 6003800 9384900 265050 11180000 5739000 5992400 5753700 6932800 6651300 6711800 8023000 5592100 8763800 741070 11201000 5519200 6445700 5863300 6994700 6776000 6564200 7697100 5 5 5 5 5 5 5 5 5 5 5 1138100000 644310000 493750000 12013 2748 11160 63971;63972;63973;63974 77563;77564;77565;77566;77567;77568;77569 77568 7 LLGAALPLLTK Unmodified 1108.722 0.72198123 2629 Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 79.208 79.222 2;3 4.7141E-06 26615 20211116_3433_TMUAki_TMT10x_P_F5 106.2 71.099 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12014 2629 11161 63975;63976 77570;77571 77570 2 LLGASELPIVTPALR Unmodified 1548.9239 0.92392852 1172 P52292 KPNA2 Importin subunit alpha-1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 2.51 5 14 3 1 2 5 17 13 47.424 47.359 2;3 3.7143E-72 27289 20211116_3439_TMUAki_TMT10x_S_F1 325.73 256.94 115410000 192970000 613910 177830000 110440000 145660000 117250000 88152000 92697000 99132000 125260000 107450000 180000000 8743700 182010000 106020000 149080000 117810000 92858000 96533000 96365000 119830000 23 23 8 23 23 23 23 23 23 23 23 66628000 109020000 63395 100190000 51864000 94836000 64686000 47822000 52512000 56301000 69855000 62029000 101700000 4339300 102760000 49989000 95886000 64566000 51249000 54570000 54637000 66849000 13 13 4 13 13 13 13 13 13 13 13 48777000 83941000 550520 77640000 58574000 50826000 52562000 40330000 40185000 42831000 55405000 45418000 78302000 4404500 79250000 56027000 53196000 53247000 41609000 41963000 41728000 52976000 10 10 4 10 10 10 10 10 10 10 10 19968000000 10893000000 9074700000 12015 1172 11162 63977;63978;63979;63980;63981;63982;63983;63984;63985;63986;63987;63988;63989;63990;63991;63992;63993;63994;63995;63996;63997;63998;63999;64000;64001;64002;64003;64004;64005;64006 77572;77573;77574;77575;77576;77577;77578;77579;77580;77581;77582;77583;77584;77585;77586;77587;77588;77589;77590;77591;77592;77593;77594;77595;77596;77597;77598;77599;77600;77601 77590 30 LLGDASVSFTENCVVGIQANTER Unmodified 2479.2013 0.20130194 547 P07954;P07954-2 FH Fumarate hydratase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 94.175 94.175 3 1.9805E-08 32938 20211116_3433_TMUAki_TMT10x_P_F5 94.463 84.124 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12016 547 11163 64007;64008;64009 77602;77603;77604 77602 3 LLGELLQDNAK Unmodified 1212.6714 0.67140222 966 P37837 TALDO1 Transaldolase yes yes 0 0 0 0 By MS/MS By MS/MS 4.93 1.16 2 3 4 4 1 9 5 73.798 73.789 2;3 1.0218E-15 23615 20211116_3445_TMUAki_TMT10x_S_F6 204.5 136.51 61130000 98975000 529140 107370000 79747000 104160000 71371000 74127000 70872000 71439000 78371000 56921000 92386000 5661800 108890000 76277000 105630000 72817000 76802000 72388000 69882000 75370000 15 15 10 15 15 15 15 15 15 15 15 36688000 58011000 437250 63105000 50772000 79020000 46293000 44146000 42692000 42514000 45701000 34163000 54149000 3586200 64256000 48593000 78735000 47080000 46596000 43696000 41588000 43993000 9 9 8 9 9 9 9 9 9 9 9 24442000 40964000 91889 44263000 28975000 25140000 25078000 29980000 28180000 28926000 32670000 22758000 38236000 2075600 44637000 27684000 26899000 25737000 30206000 28692000 28294000 31376000 6 6 2 6 6 6 6 6 6 6 6 6020500000 3815000000 2205500000 12017 966 11164 64010;64011;64012;64013;64014;64015;64016;64017;64018;64019;64020;64021;64022;64023 77605;77606;77607;77608;77609;77610;77611;77612;77613;77614;77615;77616;77617;77618;77619;77620;77621;77622;77623 77622 19 LLGGLAVR Unmodified 797.51232 0.51232281 783 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 0 By MS/MS By MS/MS 2.86 2.23 2 2 2 1 4 3 54.043 53.827 2 0.00041496 15556 20211116_3428_TMUAki_TMT10x_P_F1 142.74 87.979 34272000 59776000 12540 59718000 47522000 52154000 32270000 42070000 41500000 35507000 45447000 31907000 55778000 2658900 60814000 45159000 53371000 33817000 43086000 41955000 34949000 43719000 8 8 2 8 8 8 8 8 8 8 8 16920000 29774000 4464.3 29428000 31969000 38516000 18818000 20484000 20258000 17416000 22639000 15753000 27781000 1490000 30182000 30315000 38272000 19820000 21645000 20631000 17136000 21766000 4 4 1 4 4 4 4 4 4 4 4 17351000 30002000 8075.6 30290000 15552000 13638000 13452000 21586000 21241000 18091000 22807000 16154000 27996000 1168900 30632000 14844000 15100000 13996000 21441000 21324000 17813000 21953000 4 4 1 4 4 4 4 4 4 4 4 4371800000 2566100000 1805700000 12018 783 11165 64024;64025;64026;64027;64028;64029;64030 77624;77625;77626;77627;77628;77629;77630;77631;77632 77625 9 LLGGVTIAQGGVLPNIQAVLLPK Unmodified 2270.3726 0.37258843 690;2134 P16104;Q8IUE6 H2AFX;HIST2H2AB Histone H2AX;Histone H2A type 2-B no no 0 0 0 0 By MS/MS By MS/MS 5.39 1.09 1 4 7 7 4 10 13 81.365 81.369 2;3;4;5 3.8483E-69 26652 20211116_3445_TMUAki_TMT10x_S_F6 249.32 238.71 128860000 212510000 781430 205700000 159300000 207340000 189730000 121960000 126460000 133470000 133590000 119970000 198270000 8251700 210350000 153490000 209200000 188900000 128650000 131680000 129880000 128640000 29 29 11 29 29 29 29 29 29 29 29 61977000 96012000 241410 99052000 59717000 119980000 76551000 59748000 65053000 66070000 62928000 57704000 89601000 3026700 101150000 57658000 119580000 76413000 63977000 66608000 64267000 60770000 15 15 4 15 15 15 15 15 15 15 15 66878000 116490000 540020 106650000 99584000 87358000 113180000 62211000 61411000 67404000 70658000 62271000 108660000 5225000 109210000 95832000 89619000 112490000 64677000 65068000 65617000 67874000 14 14 7 14 14 14 14 14 14 14 14 67230000000 27828000000 39403000000 12019 690;2134 11166 64031;64032;64033;64034;64035;64036;64037;64038;64039;64040;64041;64042;64043;64044;64045;64046;64047;64048;64049;64050;64051;64052;64053 77633;77634;77635;77636;77637;77638;77639;77640;77641;77642;77643;77644;77645;77646;77647;77648;77649;77650;77651;77652;77653;77654;77655;77656;77657;77658;77659;77660;77661;77662 77659 30 LLGGVTIAQGGVLPNIQAVLLPKK Unmodified 2398.4676 0.46755145 690;2134 P16104;Q8IUE6 H2AFX;HIST2H2AB Histone H2AX;Histone H2A type 2-B no no 0 0 0 1 By MS/MS By matching 8 0 3 2 1 79.527 79.526 3;4 7.0859E-12 26215 20211116_3436_TMUAki_TMT10x_P_F8 117.48 113.95 8474500 12803000 67084 12395000 6986200 15709000 7630100 5857400 7745600 8622400 9230700 7889100 11945000 494710 12723000 6702700 15578000 7709400 6535300 7927400 8307200 8858500 3 3 1 3 3 3 3 3 3 3 3 8474500 12803000 67084 12395000 6986200 15709000 7630100 5857400 7745600 8622400 9230700 7889100 11945000 494710 12723000 6702700 15578000 7709400 6535300 7927400 8307200 8858500 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3004600000 2099700000 904880000 12020 690;2134 11167 64054;64055;64056 77663;77664;77665 77663 3 LLGHEVEDVIIK Unmodified 1363.7711 0.77111627 2376 Q92900;Q92900-2 UPF1 Regulator of nonsense transcripts 1 yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 60.913 60.911 3 5.9219E-08 21675 20211116_3441_TMUAki_TMT10x_S_F3 111.63 88.713 22309000 36275000 340290 40838000 30003000 34116000 25549000 28174000 25373000 25798000 30574000 20774000 33866000 2252100 41239000 28676000 35036000 26143000 28875000 26005000 25293000 29332000 6 6 5 6 6 6 6 6 6 6 6 11068000 17396000 283480 19255000 16081000 23577000 14161000 14247000 12921000 12974000 15075000 10308000 16239000 1252000 19577000 15388000 23543000 14426000 14918000 13275000 12723000 14476000 3 3 3 3 3 3 3 3 3 3 3 11240000 18879000 56808 21583000 13923000 10538000 11388000 13928000 12452000 12824000 15499000 10466000 17627000 1000100 21662000 13288000 11493000 11717000 13957000 12730000 12570000 14857000 3 3 2 3 3 3 3 3 3 3 3 2671300000 1765400000 905880000 12021 2376 11168 64057;64058;64059;64060;64061;64062 77666;77667;77668;77669;77670;77671;77672 77669 7 LLGHLVK Unmodified 778.50651 0.50650915 678 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 45.536 45.507 3 0.0021513 12410 20211116_3440_TMUAki_TMT10x_S_F2 106.76 44.924 817580 1388700 0 1167700 1031600 977320 854100 1312600 1281100 1226800 1257100 761230 1295000 68526 1204000 984530 1014900 888850 1315100 1283800 1201700 1213500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 817580 1388700 0 1167700 1031600 977320 854100 1312600 1281100 1226800 1257100 761230 1295000 68526 1204000 984530 1014900 888850 1315100 1283800 1201700 1213500 1 1 0 1 1 1 1 1 1 1 1 157220000 0 157220000 12022 678 11169 64063;64064 77673;77674 77674 2 LLGHWEEAAHDLALACK Unmodified 1932.9516 0.9516166 1137 P50502;Q8IZP2 ST13;ST13P4 Hsc70-interacting protein;Putative protein FAM10A4 yes no 0 0 0 0 By MS/MS By MS/MS 5.43 1.29 1 3 3 3 4 9 5 69.119 69.226 3;4 3.342E-29 21732 20211116_3445_TMUAki_TMT10x_S_F6 182.17 165.48 82095000 126220000 936960 141850000 85942000 100600000 99537000 45928000 39918000 55343000 86888000 76442000 117830000 6760400 142990000 82776000 103800000 98408000 49738000 44885000 53663000 82363000 17 17 10 17 17 17 17 17 17 17 17 47360000 71713000 537620 80331000 51624000 70624000 58722000 27920000 23906000 33757000 49075000 44100000 66948000 4428900 81197000 49707000 71586000 58115000 30717000 26737000 32729000 46562000 10 10 7 10 10 10 10 10 10 10 10 34735000 54504000 399340 61520000 34318000 29973000 40815000 18009000 16012000 21585000 37812000 32342000 50885000 2331500 61793000 33069000 32212000 40293000 19021000 18148000 20934000 35801000 7 7 3 7 7 7 7 7 7 7 7 13760000000 7306200000 6453600000 12023 1137 11170 64065;64066;64067;64068;64069;64070;64071;64072;64073;64074;64075;64076;64077;64078 77675;77676;77677;77678;77679;77680;77681;77682;77683;77684;77685;77686;77687;77688;77689;77690;77691;77692;77693 77691 19 LLGLGQK Unmodified 727.45922 0.4592246 1091 P49321;P49321-3;P49321-2 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 0 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 53.082 52.958 2 0.0024257 15166 20211116_3428_TMUAki_TMT10x_P_F1 126.04 31.368 30198000 49769000 156950 49056000 48576000 52115000 35491000 42710000 36883000 37978000 41373000 28118000 46437000 2825700 50141000 46252000 52691000 36728000 43758000 37620000 37287000 39772000 6 6 3 6 6 6 6 6 6 6 6 16375000 26034000 85055 26555000 34682000 37626000 20611000 22412000 21924000 20489000 23140000 15247000 24295000 1649500 27220000 32903000 37306000 21683000 23497000 22289000 20090000 22285000 3 3 2 3 3 3 3 3 3 3 3 13823000 23735000 71899 22501000 13894000 14488000 14881000 20298000 14959000 17489000 18233000 12871000 22142000 1176200 22922000 13349000 15385000 15045000 20260000 15331000 17197000 17487000 3 3 1 3 3 3 3 3 3 3 3 1760500000 1108200000 652240000 12024 1091 11171 64079;64080;64081;64082;64083;64084 77694;77695;77696;77697;77698;77699;77700 77694 7 LLGLPFIAGPVDIR Unmodified 1479.8813 0.88133542 2161 Q8IXT5 RBM12B RNA-binding protein 12B yes yes 0 0 0 0 By MS/MS By MS/MS 3.57 0.495 3 4 3 4 80.86 80.839 2;3 2.6982E-29 27423 20211116_3442_TMUAki_TMT10x_S_F4 206.49 169.38 11979000 19900000 22793 18808000 14116000 16440000 16102000 10689000 9334500 11778000 13843000 11152000 18565000 724550 19229000 13568000 16765000 16019000 11190000 9952300 11458000 13215000 6 6 1 6 6 6 6 6 6 6 6 5283900 8973800 0 8421900 5429400 9442200 6446100 4685300 4253800 5272600 6072500 4918300 8371400 247970 8646000 5219000 9449300 6417500 5021400 4488000 5125300 5801700 2 2 0 2 2 2 2 2 2 2 2 6695600 10926000 22793 10387000 8686600 6998000 9655500 6003200 5080700 6505000 7770900 6233700 10193000 476580 10583000 8349200 7315800 9601700 6168900 5464400 6332500 7413000 4 4 1 4 4 4 4 4 4 4 4 2886600000 1449200000 1437400000 12025 2161 11172 64085;64086;64087;64088;64089;64090;64091 77701;77702;77703;77704;77705;77706 77705 6 LLGNTFVALSDLR Unmodified 1417.7929 0.79291434 1047 P46379;P46379-2;P46379-3;P46379-4;P46379-5 BAG6 Large proline-rich protein BAG6 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 78.855 78.828 2 0.062685 26016 20211116_3440_TMUAki_TMT10x_S_F2 46.216 21.044 11556000 18551000 0 17563000 14816000 20713000 13737000 9566200 9330400 9863500 13603000 10758000 17307000 735400 18034000 14162000 20656000 13854000 10298000 9836600 9620900 12990000 2 2 0 2 2 2 2 2 2 2 2 9091400 13907000 0 13505000 10830000 18008000 10963000 6925300 7064100 7178000 10005000 8462900 12976000 511720 13873000 10370000 17819000 10993000 7608000 7461500 7000000 9560800 1 1 0 1 1 1 1 1 1 1 1 2465000 4644100 0 4058100 3986200 2704500 2773800 2640900 2266300 2685500 3597400 2295100 4331300 223680 4161100 3791500 2837200 2861300 2689600 2375000 2621000 3429000 1 1 0 1 1 1 1 1 1 1 1 1483800000 778340000 705470000 12026 1047 11173 64092;64093 77707 77707 1 LLGPDAAINLTDPDGALAK Unmodified 1863.9942 0.99419293 1647 Q13561;Q13561-3;Q13561-2 DCTN2 Dynactin subunit 2 yes no 0 0 0 0 By MS/MS 5.67 0.471 1 2 3 77.98 77.972 2;3 1.0698E-17 25291 20211116_3445_TMUAki_TMT10x_S_F6 155.66 127.34 9516100 15436000 22014 15011000 11926000 10650000 12088000 7173700 7017000 8306800 10276000 8860100 14402000 786760 15278000 11437000 11040000 12096000 7503100 7476100 8066200 9811500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9516100 15436000 22014 15011000 11926000 10650000 12088000 7173700 7017000 8306800 10276000 8860100 14402000 786760 15278000 11437000 11040000 12096000 7503100 7476100 8066200 9811500 2 2 1 2 2 2 2 2 2 2 2 1802500000 0 1802500000 12027 1647 11174 64094;64095;64096 77708;77709 77708 2 LLGPDAAINLTDPDGALAKR Unmodified 2020.0953 0.095303954 1647 Q13561;Q13561-3;Q13561-2 DCTN2 Dynactin subunit 2 yes no 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 69.955 70.166 3 9.9929E-09 22071 20211116_3445_TMUAki_TMT10x_S_F6 102.39 66.264 25173000 44784000 1643000 35750000 41156000 49844000 26850000 70094000 31785000 59564000 31069000 23451000 41754000 3842100 37320000 39202000 50364000 28136000 69930000 31973000 58607000 29993000 4 4 4 4 4 4 4 4 3 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25173000 44784000 1643000 35750000 41156000 49844000 26850000 70094000 31785000 59564000 31069000 23451000 41754000 3842100 37320000 39202000 50364000 28136000 69930000 31973000 58607000 29993000 4 4 4 4 4 4 4 4 3 4 4 3102800000 1200200000 1902600000 12028 1647 11175 64097;64098;64099;64100 77710;77711;77712;77713;77714 77711 5 LLGPSAAADILQLSSSLPLQSR Unmodified 2236.2427 0.24269647 2092 Q7Z6Z7;Q7Z6Z7-2;Q7Z6Z7-3 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.745 1 2 3 4 2 81.165 81.147 2;3 9.5663E-56 27536 20211116_3442_TMUAki_TMT10x_S_F4 227.06 213.42 6449100 10539000 73932 10081000 7258700 10376000 7810400 5674600 5493000 6258400 7905100 6005200 9832100 500570 10321000 6978000 10447000 7821800 6024300 5775200 6088300 7551100 6 6 4 6 6 6 6 6 6 6 6 4435800 7394800 61606 6982600 4682100 8256900 5074500 3990500 3987700 4405700 5413300 4130600 6898600 318780 7171600 4503000 8237200 5093100 4285000 4154900 4285700 5177900 4 4 3 4 4 4 4 4 4 4 4 2013300 3144000 12326 3098300 2576600 2119100 2735900 1684100 1505300 1852700 2491700 1874600 2933500 181790 3149300 2475000 2209400 2728700 1739300 1620200 1802500 2373100 2 2 1 2 2 2 2 2 2 2 2 6006900000 3279700000 2727200000 12029 2092 11176 64101;64102;64103;64104;64105;64106 77715;77716;77717;77718;77719;77720 77720 6 LLGPTVMLGGCEFSR Unmodified 1635.8113 0.8112833 2215 Q8N9T8 KRI1 Protein KRI1 homolog yes yes 0 0 0 0 By MS/MS 2 0 1 1 75.292 75.222 2 0.00063141 24538 20211116_3440_TMUAki_TMT10x_S_F2 74.46 40.082 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12030 2215 11177 64107 77721 77721 1 LLGPVLVK Unmodified 837.56878 0.56877505 173 O15212 PFDN6 Prefoldin subunit 6 yes yes 0 0 0 0 By MS/MS By MS/MS 2.88 2.15 2 3 1 1 1 4 4 65.406 65.207 2 0.0018968 21818 20211116_3429_TMUAki_TMT10x_P_F2 113.25 66.687 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12031 173 11178 64108;64109;64110;64111;64112;64113;64114;64115 77722;77723;77724;77725;77726;77727;77728;77729 77724 8 LLGQFTLIGIPPAPR Unmodified 1591.945 0.94499831 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 6.24 1.16 3 21 13 22 11 48 22 52.083 52.153 2;3 3.1239E-51 27642 20211116_3435_TMUAki_TMT10x_P_F7 284.28 197.81 106740000 170060000 704720 155940000 120840000 145750000 127910000 98121000 92951000 107370000 125920000 99381000 158630000 8068500 159510000 116030000 147910000 128290000 102440000 97261000 104490000 120450000 60 60 30 59 60 59 60 59 60 60 60 58324000 91270000 420440 83541000 55894000 98293000 66792000 51777000 52307000 58174000 67449000 54306000 85135000 4646900 85992000 53869000 98180000 66732000 55182000 54384000 56552000 64596000 46 46 23 46 46 46 46 45 46 46 46 48413000 78789000 284280 72396000 64951000 47454000 61114000 46343000 40644000 49200000 58467000 45076000 73494000 3421600 73521000 62164000 49729000 61557000 47260000 42877000 47934000 55849000 14 14 7 13 14 13 14 14 14 14 14 48229000000 19746000000 28482000000 12032 972 11179 64116;64117;64118;64119;64120;64121;64122;64123;64124;64125;64126;64127;64128;64129;64130;64131;64132;64133;64134;64135;64136;64137;64138;64139;64140;64141;64142;64143;64144;64145;64146;64147;64148;64149;64150;64151;64152;64153;64154;64155;64156;64157;64158;64159;64160;64161;64162;64163;64164;64165;64166;64167;64168;64169;64170;64171;64172;64173;64174;64175;64176;64177;64178;64179;64180;64181;64182;64183;64184;64185 77730;77731;77732;77733;77734;77735;77736;77737;77738;77739;77740;77741;77742;77743;77744;77745;77746;77747;77748;77749;77750;77751;77752;77753;77754;77755;77756;77757;77758;77759;77760;77761;77762;77763;77764;77765;77766;77767;77768;77769;77770;77771;77772;77773;77774;77775;77776;77777;77778;77779;77780;77781;77782;77783;77784;77785;77786;77787;77788;77789;77790;77791;77792;77793;77794;77795;77796;77797;77798;77799;77800;77801;77802;77803;77804;77805;77806;77807;77808;77809;77810 77770 81 LLGQIVDR Unmodified 912.53927 0.53926584 2494 Q96I24;Q96I24-2 FUBP3 Far upstream element-binding protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 52.992 53.152 2 0.032754 15110 20211116_3445_TMUAki_TMT10x_S_F6 66.073 32.523 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12033 2494 11180 64186;64187 77811;77812 77812 2 LLGQRPGPYDRPIGGR Unmodified 1750.9591 0.95908524 893 P31942;P31942-2;P31942-3 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes no 0 0 0 2 By MS/MS By MS/MS 2.8 1.17 1 1 1 2 4 1 36.619 36.534 3;4 6.4636E-36 11521 20211116_3441_TMUAki_TMT10x_S_F3 215.48 182.2 6530300 10173000 137580 11930000 15418000 13050000 7868900 7515600 8439700 7138900 9148900 6081300 9499200 777030 12063000 14601000 13101000 8394200 7909400 8586100 6987800 8803700 5 5 3 5 5 5 5 5 5 5 5 5825900 9023200 128600 10586000 14692000 12420000 7245400 6590900 7441400 6335600 8200300 5425300 8425400 709960 10717000 13906000 12408000 7744700 6987700 7588700 6198200 7887000 4 4 2 4 4 4 4 4 4 4 4 704380 1150000 8979.3 1344000 726670 630580 623500 924680 998320 803320 948680 655920 1073800 67079 1346700 694720 693000 649440 921670 997460 789560 916690 1 1 1 1 1 1 1 1 1 1 1 1726400000 1509500000 216940000 12034 893 11181 64188;64189;64190;64191;64192 77813;77814;77815;77816;77817 77817 5 LLGSASPSSSVR Unmodified 1159.6197 0.619701 995 P41219;P41219-2 PRPH Peripherin yes no 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 38.59 38.791 2 1.3701E-08 9463 20211116_3436_TMUAki_TMT10x_P_F8 142.94 114.77 2472800 4207800 3998.9 4556600 4217100 3355800 2774200 2773000 3265500 2464300 3277700 2302300 3927600 219860 4605900 4006700 3479600 2904700 2839500 3301000 2419500 3161500 3 3 2 3 3 3 3 3 3 3 3 1131000 1934400 0 2086100 2834700 2228600 1400400 1239600 1601100 1157600 1431400 1053000 1805500 104320 2119500 2681100 2239300 1501700 1307800 1614100 1133900 1386000 1 1 0 1 1 1 1 1 1 1 1 1341800 2273400 3998.9 2470600 1382400 1127200 1373900 1533400 1664400 1306800 1846400 1249300 2122100 115540 2486400 1325600 1240300 1403000 1531700 1687000 1285600 1775500 2 2 2 2 2 2 2 2 2 2 2 110760000 47422000 63338000 12035 995 11182 64193;64194;64195 77818;77819;77820 77818 3 LLGSTIPLCSAQWER Unmodified 1729.8821 0.88214006 1135 P50416;P50416-2 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 73.194 73.149 2 2.0864E-27 25041 20211116_3429_TMUAki_TMT10x_P_F2 174.05 144.29 8759200 14154000 102550 14327000 11502000 13175000 12452000 5386800 4103400 6245100 10122000 8155900 13208000 789250 14587000 11055000 13318000 12322000 5895700 4753400 6063900 9577800 2 2 1 2 2 2 2 2 2 2 2 6138900 9627900 102550 9588800 8366900 10691000 9539500 3709400 2858900 4218500 6785300 5716700 8983700 635740 9801400 8058300 10666000 9408200 4139000 3340100 4099100 6424000 1 1 1 1 1 1 1 1 1 1 1 2620300 4526500 0 4738600 3135500 2484200 2912400 1677400 1244500 2026600 3336500 2439200 4224500 153510 4785500 2996200 2651700 2914200 1756700 1413300 1964900 3153800 1 1 0 1 1 1 1 1 1 1 1 621400000 429460000 191950000 12036 1135 11183 64196;64197;64198 77821;77822;77823 77822 3 LLGTIYTAAEEIEAVGGK Unmodified 1833.9724 0.97239485 2029 Q6YN16;Q6YN16-2 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.894 2 1 2 2 3 82.151 82.152 3 5.0036E-06 27966 20211116_3442_TMUAki_TMT10x_S_F4 90.453 82.542 5942600 13951000 65959 23735000 10142000 8935000 8579900 6641900 7577300 5482600 11613000 5533500 13054000 502600 23302000 9688400 9963800 8753600 6834000 7895700 5402400 11078000 5 5 2 5 5 5 5 5 5 5 5 2340200 5478400 19021 10301000 3819800 5052500 3346100 3397200 4044100 2275000 6202900 2179100 5130000 128670 10090000 3651400 5433700 3440500 3504000 4160200 2268100 5916900 3 3 1 3 3 3 3 3 3 3 3 3602400 8472500 46938 13434000 6322100 3882500 5233800 3244600 3533200 3207600 5410400 3354500 7924300 373940 13212000 6036900 4530000 5313200 3330000 3735500 3134200 5161100 2 2 1 2 2 2 2 2 2 2 2 513930000 216410000 297520000 12037 2029 11184 64199;64200;64201;64202;64203 77824;77825;77826;77827;77828 77827 5 LLGVFEQNQDRK Unmodified 1445.7627 0.76267685 2470 Q96G61 NUDT11 Diphosphoinositol polyphosphate phosphohydrolase 3-beta yes yes 0 0 0 1 By MS/MS 7 0 1 1 53.257 53.769 3 0.0077971 17359 20211116_3446_TMUAki_TMT10x_S_F7 64.441 39.842 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12038 2470 11185 64204 77829 77829 1 LLGYVATLK Unmodified 976.59572 0.59571809 346 O75534;O75534-2;O75534-3;O75534-4 CSDE1 Cold shock domain-containing protein E1 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 73.413 73.2 2 6.2028E-06 26601 20211116_3441_TMUAki_TMT10x_S_F3 166.68 88.938 14118000 24632000 282290 23340000 16493000 18445000 14215000 14409000 12924000 13977000 18513000 13148000 22979000 1466900 23828000 15774000 19002000 14498000 14841000 13402000 13669000 17686000 3 3 3 3 3 3 3 3 3 3 3 5118100 8649900 216950 8632800 6272700 9787500 6120000 5409100 4770000 5087000 6662000 4767100 8071200 642690 8825300 6023900 9801300 6174000 5710900 4978800 4981500 6368000 1 1 1 1 1 1 1 1 1 1 1 9000400 15982000 65335 14707000 10220000 8657800 8095400 9000000 8153600 8890500 11851000 8380700 14908000 824170 15003000 9750100 9200800 8324400 9130000 8423500 8687400 11318000 2 2 2 2 2 2 2 2 2 2 2 842680000 293940000 548730000 12039 346 11186 64205;64206;64207 77830;77831;77832 77831 3 LLHAGFK Unmodified 784.45956 0.45955895 32 CON__P00735 yes yes 0 0 0 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 41.557 41.417 3 0.0061908 12135 20211116_3429_TMUAki_TMT10x_P_F2 91.584 0 + 7305000 11210000 214570 12219000 11874000 14829000 11102000 13773000 16274000 15498000 11843000 6803300 10464000 869600 12433000 11379000 14922000 11462000 14109000 16172000 15065000 11562000 4 4 4 4 4 4 4 4 4 4 4 4694200 6989200 134040 7727300 9065000 11997000 8032300 9727200 11647000 10810000 8062000 4371700 6524400 575320 7894800 8674100 11908000 8313400 10037000 11563000 10513000 7888100 2 2 2 2 2 2 2 2 2 2 2 2610900 4221000 80528 4491400 2809000 2831600 3069700 4046100 4626900 4687900 3781000 2431600 3939700 294280 4538100 2704800 3014300 3148300 4071700 4608900 4552000 3673600 2 2 2 2 2 2 2 2 2 2 2 890160000 592120000 298040000 12040 32 11187 64208;64209;64210;64211;64212 77833;77834;77835;77836 77834 4 LLHAQYGELIQPR Unmodified 1536.8413 0.84126152 2539 Q96Q15;Q96Q15-4;Q96Q15-3;Q96Q15-2 SMG1 Serine/threonine-protein kinase SMG1 yes no 0 0 0 0 By matching By MS/MS 8 0 2 1 1 50.437 50.431 3 0.0011345 13802 20211116_3447_TMUAki_TMT10x_S_F8 72.681 55.279 1857500 3312700 25434 3319000 2092900 1496000 1704400 2001400 1820300 1698500 2445300 1729700 3091100 181000 3358200 1998500 1647800 1752800 2000300 1869000 1671300 2339500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1857500 3312700 25434 3319000 2092900 1496000 1704400 2001400 1820300 1698500 2445300 1729700 3091100 181000 3358200 1998500 1647800 1752800 2000300 1869000 1671300 2339500 1 1 1 1 1 1 1 1 1 1 1 372030000 181820000 190210000 12041 2539 11188 64213;64214 77837 77837 1 LLHDQVGVIQFGPYK Unmodified 1712.925 0.92499115 1207 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 2 1 65.064 65.102 3 8.2418E-05 19726 20211116_3447_TMUAki_TMT10x_S_F8 82.925 64.394 35411000 61130000 653310 54048000 44943000 77322000 44469000 48192000 48269000 49887000 49282000 32972000 57015000 3078400 55986000 43082000 76680000 45249000 50519000 48975000 48652000 47509000 4 4 3 4 4 4 4 4 4 4 4 31225000 52002000 465400 46607000 39792000 71899000 39572000 40969000 41965000 43145000 42708000 29072000 48504000 2542700 48306000 38138000 70991000 40225000 43281000 42614000 42048000 41176000 3 3 2 3 3 3 3 3 3 3 3 4186800 9127900 187910 7441000 5150200 5422800 4897100 7222200 6303600 6741700 6573700 3899700 8511000 535730 7680000 4943300 5689300 5024100 7237900 6360900 6604100 6333000 1 1 1 1 1 1 1 1 1 1 1 2659300000 1976400000 682910000 12042 1207 11189 64215;64216;64217 77838;77839;77840;77841 77841 4 LLHEMILVCDAYRK Oxidation (M) 1775.9062 0.90624632 1206 P53618 COPB1 Coatomer subunit beta yes yes 0 0 1 1 By MS/MS By MS/MS 8 0 2 1 1 49.57 49.567 4 8.8819E-05 13948 20211116_3436_TMUAki_TMT10x_P_F8 91.743 78.543 10856000 18918000 156020 18210000 16749000 22190000 13496000 14498000 12571000 13743000 15301000 10108000 17650000 1069300 18687000 15984000 22187000 13831000 15106000 12926000 13453000 14676000 5 5 3 5 5 5 5 5 5 5 5 7098500 12210000 156020 11899000 13416000 18755000 10517000 8886900 8281900 8891600 10055000 6610600 11392000 822400 12263000 12800000 18461000 10750000 9533700 8586100 8683800 9644900 3 3 3 3 3 3 3 3 3 3 3 3757100 6708500 0 6311300 3333500 3435500 2978900 5611300 4288700 4851100 5246200 3497800 6258300 246860 6423700 3183600 3726100 3080700 5572600 4339700 4769200 5031200 2 2 0 2 2 2 2 2 2 2 2 368130000 172900000 195230000 12043 1206 11190 64218;64219 77842;77843;77844;77845;77846 77842 1616 5 LLHEVQELTTEVEK Unmodified 1666.8778 0.87776618 1647 Q13561;Q13561-3;Q13561-2 DCTN2 Dynactin subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS 2.33 0.943 2 3 3 1 4 5 72.764 72.686 2;3 5.519E-24 25551 20211116_3430_TMUAki_TMT10x_P_F3 170.95 146.88 29750000 49869000 293690 45819000 34505000 50335000 35658000 30862000 29389000 31183000 37780000 27702000 46518000 2767200 47096000 33129000 50561000 35916000 32370000 30471000 30442000 36185000 9 9 7 9 9 9 9 9 9 9 9 18795000 30092000 209090 28330000 20686000 37205000 23310000 20148000 18198000 19205000 23543000 17502000 28073000 1760200 29159000 19912000 36971000 23349000 21318000 18926000 18795000 22546000 6 6 5 6 6 6 6 6 6 6 6 10954000 19777000 84597 17489000 13819000 13130000 12349000 10714000 11191000 11978000 14237000 10200000 18445000 1006900 17938000 13217000 13591000 12567000 11053000 11544000 11646000 13640000 3 3 2 3 3 3 3 3 3 3 3 7791300000 3144500000 4646800000 12044 1647 11191 64220;64221;64222;64223;64224;64225;64226;64227;64228 77847;77848;77849;77850;77851;77852;77853;77854;77855;77856;77857;77858;77859 77852 13 LLHGDIK Unmodified 794.46504 0.46503826 2510 Q96KB5;Q96KB5-2 PBK Lymphokine-activated killer T-cell-originated protein kinase yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 36.551 36.59 3 0.0050359 7648 20211116_3434_TMUAki_TMT10x_P_F6 94.887 46.383 539110 890460 8171.4 864200 653610 624110 610320 509820 529500 517890 691220 502030 830800 53915 879900 626120 648040 618840 524360 547950 505470 661790 2 2 2 2 2 2 2 2 2 2 2 169750 257370 213.39 260410 253570 288150 188130 138180 156410 156880 179570 158060 240170 15446 265860 241500 288470 193260 148620 161330 152450 172510 1 1 1 1 1 1 1 1 1 1 1 369360 633090 7958 603790 400040 335960 422190 371640 373090 361010 511650 343970 590630 38469 614030 384620 359580 425570 375740 386620 353020 489280 1 1 1 1 1 1 1 1 1 1 1 48660000 34176000 14484000 12045 2510 11192 64229;64230;64231 77860;77861 77860 2 LLHIEELR Unmodified 1021.592 0.59202969 3220 Q9Y224 C14orf166 UPF0568 protein C14orf166 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 47.512 47.534 3 0.00016474 13361 20211116_3431_TMUAki_TMT10x_P_F4 150.35 74.497 4524000 6905200 2051.7 8060900 5542500 5556100 4952600 4634600 5383500 4911800 5769000 4212000 6447600 359190 8104400 5297600 5794000 5067800 4766900 5471600 4785700 5553200 5 5 2 5 5 5 5 5 5 5 5 1759100 2678800 0 3165600 3548700 3306100 2271100 1839900 2062000 1923600 2319000 1637800 2501400 158720 3197200 3369800 3326400 2364000 1947200 2116000 1875300 2229100 2 2 0 2 2 2 2 2 2 2 2 2764800 4226500 2051.7 4895300 1993700 2250000 2681500 2794700 3321400 2988200 3450000 2574200 3946200 200470 4907200 1927800 2467600 2703800 2819800 3355600 2910500 3324100 3 3 2 3 3 3 3 3 3 3 3 1333300000 755030000 578290000 12046 3220 11193 64232;64233;64234;64235;64236;64237 77862;77863;77864;77865;77866;77867 77863 6 LLHIEELRELQTK Unmodified 1620.9199 0.91990577 3220 Q9Y224 C14orf166 UPF0568 protein C14orf166 yes yes 0 0 0 1 By matching By MS/MS 6.5 0.5 2 2 1 3 55.953 56.395 3;4 1.4849E-11 16490 20211116_3445_TMUAki_TMT10x_S_F6 147.39 117.58 12973000 21651000 12253 24659000 11047000 11992000 9396300 17642000 17414000 17321000 17663000 12079000 20214000 1022500 24755000 10549000 13125000 9865600 17642000 17374000 16930000 17031000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12973000 21651000 12253 24659000 11047000 11992000 9396300 17642000 17414000 17321000 17663000 12079000 20214000 1022500 24755000 10549000 13125000 9865600 17642000 17374000 16930000 17031000 2 2 1 2 2 2 2 2 2 2 2 3188000000 1350900000 1837100000 12047 3220 11194 64238;64239;64240;64241 77868;77869;77870 77868 3 LLHKYPFILPHQQVDK Unmodified 1975.1044 0.1043525 3168 Q9ULC4;Q9ULC4-2;Q9ULC4-3 MCTS1 Malignant T-cell-amplified sequence 1 yes no 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 52.305 52.205 5 1.0139E-07 15703 20211116_3442_TMUAki_TMT10x_S_F4 117 105.1 3829400 6303600 0 6457300 4970400 5534200 3902100 5412700 5729200 4976400 5610800 3564600 5882500 218650 6562800 4731500 5692100 4070500 5496300 5744300 4878200 5416200 2 2 0 2 2 2 2 2 2 2 2 1040000 1860400 0 1729000 1950600 2618900 1497100 1671600 1496100 1475400 1485600 968280 1735500 94933 1786400 1858600 2591800 1542200 1741500 1521700 1449100 1433500 1 1 0 1 1 1 1 1 1 1 1 2789400 4443200 0 4728300 3019800 2915300 2405000 3741100 4233100 3500900 4125200 2596300 4147100 123720 4776400 2872900 3100300 2528200 3754900 4222600 3429100 3982800 1 1 0 1 1 1 1 1 1 1 1 1027400000 429060000 598370000 12048 3168 11195 64242;64243;64244 77871;77872 77872 2 LLHPFHEQFSDYSGSQILR Unmodified 2273.1229 0.12291569 2950 Q9NU22 MDN1 Midasin yes yes 0 0 0 0 By MS/MS 8 0 1 1 57.202 57.352 4 0.066746 17084 20211116_3436_TMUAki_TMT10x_P_F8 34.476 23.621 5004100 8069100 115660 9173200 9100400 9793200 6933900 4448800 4430600 4325900 6320700 4660200 7533400 580040 9289500 8678500 9818300 7069100 4789200 4684000 4230000 6038800 1 1 1 1 1 1 1 1 1 1 1 5004100 8069100 115660 9173200 9100400 9793200 6933900 4448800 4430600 4325900 6320700 4660200 7533400 580040 9289500 8678500 9818300 7069100 4789200 4684000 4230000 6038800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 298860000 298860000 0 12049 2950 11196 64245 77873 77873 1 LLHVAVSDVNDDVR Unmodified 1550.8053 0.80526994 2575 Q99460;Q99460-2 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 49.451 49.094 3 0.092723 16762 20211116_3441_TMUAki_TMT10x_S_F3 33.787 18.522 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12050 2575 11197 64246 77874 77874 1 LLHVAVSDVNDDVRR Unmodified 1706.9064 0.90638097 2575 Q99460;Q99460-2 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 0 1 By MS/MS By MS/MS 4.18 0.936 3 4 3 1 5 6 42.753 42.833 3;4 9.3413E-20 10685 20211116_3444_TMUAki_TMT10x_S_F5 173.72 152.76 6372700 10022000 25785 10952000 12256000 12071000 7494700 9608000 9426000 8050400 9571800 5932700 9354900 457450 11124000 11624000 12173000 7910900 9846400 9510000 7926600 9229000 7 7 3 7 7 7 7 7 7 7 7 4001600 6054600 9726.5 6987000 10059000 10082000 5613100 5911300 5826800 5184600 5939800 3724900 5653000 263000 7108300 9525800 9986400 5932700 6199000 5922400 5093500 5726500 4 4 1 4 4 4 4 4 4 4 4 2371200 3967300 16058 3964900 2196600 1989000 1881500 3696700 3599200 2865800 3631900 2207800 3701900 194450 4015500 2098300 2186500 1978200 3647500 3587600 2833100 3502600 3 3 2 3 3 3 3 3 3 3 3 2098300000 1142700000 955620000 12051 2575 11198 64247;64248;64249;64250;64251;64252;64253;64254;64255;64256;64257 77875;77876;77877;77878;77879;77880;77881 77881 7 LLIDEAILK Unmodified 1026.6325 0.63249752 1107 P49591 SARS Serine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 By MS/MS By MS/MS 4 1.41 2 2 2 2 2 5 5 76.789 76.748 2 6.1916E-06 24757 20211116_3445_TMUAki_TMT10x_S_F6 166.17 95.137 74179000 125710000 1690600 108220000 115070000 161380000 107300000 132700000 101730000 127870000 119140000 69080000 117240000 8283200 112430000 110240000 160480000 109070000 136220000 104360000 125090000 114390000 10 10 8 10 10 10 10 10 10 10 10 41381000 68301000 1019100 59332000 60039000 112160000 62431000 68107000 54660000 66281000 66389000 38538000 63699000 4641900 61952000 57690000 110010000 62961000 71415000 56363000 64809000 63680000 6 6 6 6 6 6 6 6 6 6 6 32797000 57412000 671530 48885000 55033000 49223000 44866000 64592000 47072000 61592000 52747000 30542000 53540000 3641300 50478000 52552000 50470000 46110000 64807000 47992000 60278000 50707000 4 4 2 4 4 4 4 4 4 4 4 8687200000 4696600000 3990600000 12052 1107 11199 64258;64259;64260;64261;64262;64263;64264;64265;64266;64267 77882;77883;77884;77885;77886;77887;77888;77889;77890;77891;77892 77892 11 LLIEMEQR Oxidation (M) 1046.543 0.54303059 642 P12277 CKB Creatine kinase B-type yes yes 0 0 1 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 43.166 43.124 2 0.0073958 12813 20211116_3429_TMUAki_TMT10x_P_F2 96.19 73.148 13538000 20137000 18373 24028000 23993000 22969000 14632000 17148000 17415000 14473000 17802000 12605000 18804000 1225300 24222000 22767000 23334000 15418000 17649000 17609000 14245000 17161000 6 6 2 6 6 6 6 6 6 6 6 9028100 12954000 17866 16068000 19751000 19301000 10829000 11054000 10980000 9134500 11399000 8405900 12099000 871430 16221000 18712000 19277000 11455000 11597000 11178000 9000300 10983000 3 3 1 3 3 3 3 3 3 3 3 4510300 7182900 507.43 7960000 4242100 3668100 3803600 6094600 6435500 5338400 6403000 4199400 6705300 353880 8001500 4055400 4056100 3962500 6051500 6430600 5244900 6177800 3 3 1 3 3 3 3 3 3 3 3 3312600000 2142100000 1170500000 12053 642 11200 64268;64269;64270;64271;64272;64273 77893;77894;77895;77896;77897;77898 77893 682 6 LLIEMEQR Unmodified 1030.5481 0.54811597 642 P12277 CKB Creatine kinase B-type yes yes 0 0 0 0 By MS/MS By MS/MS 3.71 1.03 1 2 2 2 4 3 56.52 56.369 2 0.0012148 18623 20211116_3430_TMUAki_TMT10x_P_F3 126.04 93.525 106780000 152830000 1012400 217890000 207990000 147370000 112990000 91180000 102160000 98429000 132760000 99423000 142850000 9762500 216630000 197010000 153220000 119240000 95759000 105490000 95832000 127120000 5 5 2 5 5 5 5 5 5 5 5 69761000 96130000 0 136320000 178050000 119520000 78403000 59331000 69307000 66773000 81948000 64943000 89849000 5848600 135980000 168120000 121450000 84456000 63584000 71355000 64907000 78661000 3 3 0 3 3 3 3 3 3 3 3 37023000 56697000 1012400 81567000 29949000 27848000 34587000 31850000 32857000 31656000 50814000 34480000 52997000 3913900 80651000 28894000 31773000 34787000 32175000 34139000 30925000 48463000 2 2 2 2 2 2 2 2 2 2 2 4621200000 2673200000 1948000000 12054 642 11200 64274;64275;64276;64277;64278;64279;64280 77899;77900;77901;77902;77903;77904;77905 77900 7 LLIHQSLAGGIIGVK Unmodified 1517.9293 0.92934824 1329;1330 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 0 By MS/MS By MS/MS 5.38 1.8 2 1 1 1 2 1 5 3 63.853 63.931 3 7.9167E-15 20290 20211116_3433_TMUAki_TMT10x_P_F5 139.3 118.39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12055 1329;1330 11201 64281;64282;64283;64284;64285;64286;64287;64288 77906;77907;77908;77909;77910;77911;77912;77913 77906 8 LLIQVGHEPMPPTLGTNVLGR Oxidation (M) 2257.2253 0.22527227 3034 Q9NZJ7;Q9NZJ7-2 MTCH1 Mitochondrial carrier homolog 1 yes no 0 0 1 0 By MS/MS 1.5 0.5 1 1 2 67.211 66.9 3 1.5384E-07 22496 20211116_3429_TMUAki_TMT10x_P_F2 92.563 84.915 2535400 4792600 50326 3982400 2995900 5281400 3358900 3323800 2776400 2859400 3451300 2361100 4469000 263560 4139300 2884800 5256200 3370100 3464300 2874000 2811800 3308500 1 1 1 1 1 1 1 1 1 1 1 2535400 4792600 50326 3982400 2995900 5281400 3358900 3323800 2776400 2859400 3451300 2361100 4469000 263560 4139300 2884800 5256200 3370100 3464300 2874000 2811800 3308500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1053800000 1053800000 0 12056 3034 11202 64289;64290 77914;77915 77915 3084 2 LLIQVGHEPMPPTLGTNVLGR Unmodified 2241.2304 0.23035765 3034 Q9NZJ7;Q9NZJ7-2 MTCH1 Mitochondrial carrier homolog 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.6 0.8 3 1 1 1 4 72.507 72.319 3 4.8904E-06 23100 20211116_3440_TMUAki_TMT10x_S_F2 81.665 69.002 18090000 31424000 222840 29632000 23219000 20521000 24154000 18829000 16561000 19720000 23877000 16845000 29315000 1482900 30220000 22301000 21430000 24216000 19256000 17440000 19223000 22807000 9 9 8 9 9 9 9 9 9 9 9 1680600 2724500 16514 2239200 1468000 3130700 1860000 1973800 1606600 1962200 2010800 1565000 2540400 151750 2331900 1418500 3108400 1858300 2064800 1659800 1916800 1927300 1 1 1 1 1 1 1 1 1 1 1 16409000 28699000 206330 27393000 21751000 17391000 22294000 16855000 14954000 17758000 21866000 15280000 26775000 1331100 27888000 20882000 18321000 22358000 17191000 15780000 17306000 20880000 8 8 7 8 8 8 8 8 8 8 8 6153800000 629820000 5524000000 12057 3034 11202 64291;64292;64293;64294;64295 77916;77917;77918;77919 77917 4 LLIVSTTPYSEK Unmodified 1349.7442 0.74423282 3221 Q9Y230;Q9Y230-2 RUVBL2 RuvB-like 2 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 2 4 3 3 64.174 64.418 2;3 1.4478E-16 20002 20211116_3436_TMUAki_TMT10x_P_F8 209.1 137.87 20035000 32958000 63136 33394000 22417000 25634000 20017000 21237000 21940000 22081000 24848000 18654000 30755000 1614000 33921000 21429000 26494000 20489000 21839000 22340000 21531000 23880000 5 5 2 5 5 5 5 5 5 5 5 6792400 10188000 16602 10955000 9728000 13191000 7760400 6681400 7167800 7225000 7795300 6324000 9509100 564300 11155000 9275600 13154000 7956300 7138000 7340200 7033900 7500400 2 2 1 2 2 2 2 2 2 2 2 13242000 22770000 46534 22439000 12689000 12443000 12257000 14555000 14773000 14856000 17053000 12330000 21245000 1049700 22765000 12153000 13341000 12533000 14701000 14999000 14497000 16380000 3 3 1 3 3 3 3 3 3 3 3 2734900000 1339600000 1395300000 12058 3221 11203 64296;64297;64298;64299;64300;64301 77920;77921;77922;77923;77924;77925 77921 6 LLIYETEAKK Unmodified 1206.686 0.68598966 1118 P49756 RBM25 RNA-binding protein 25 yes yes 0 0 0 1 By MS/MS 7 0 1 1 52.252 52.944 3 0.03591 16490 20211116_3435_TMUAki_TMT10x_P_F7 55.839 23.315 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12059 1118 11204 64302 77926 77926 1 LLLAIVGQ Unmodified 825.53239 0.53238955 739 P20073;P20073-2 ANXA7 Annexin A7 yes no 0 0 0 0 By MS/MS By MS/MS 4.3 2.69 1 3 2 2 2 6 4 82.003 81.995 2 0.00043625 28451 20211116_3429_TMUAki_TMT10x_P_F2 148.62 148.62 4228900 6732400 0 5808200 5010300 6952900 5568000 4780800 4791300 4990000 5102300 3937200 6278600 187090 6007700 4815000 6963700 5594600 4976700 4919300 4864900 4912400 7 7 0 7 7 7 7 7 7 7 7 2561500 4016300 0 3480900 2699200 4792600 3307100 2979600 2963800 2974900 2965700 2384900 3745600 79120 3608500 2602900 4760800 3312100 3120800 3030200 2905600 2860800 4 4 0 4 4 4 4 4 4 4 4 1667500 2716100 0 2327300 2311000 2160200 2260900 1801200 1827500 2015200 2136700 1552300 2533000 107970 2399200 2212100 2202900 2282500 1855800 1889100 1959300 2051600 3 3 0 3 3 3 3 3 3 3 3 2640700000 1356800000 1283900000 12060 739 11205 64303;64304;64305;64306;64307;64308;64309;64310;64311;64312 77927;77928;77929;77930;77931;77932;77933;77934;77935 77928 9 LLLCGGAPLSATTQR Unmodified 1556.8345 0.83446158 437 O95573 ACSL3 Long-chain-fatty-acid--CoA ligase 3 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 59.9 59.559 2;3 3.0195E-32 21063 20211116_3441_TMUAki_TMT10x_S_F3 194.52 160.34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12061 437 11206 64313;64314 77936;77937 77937 2 LLLDGAPLIAIHK Unmodified 1372.8442 0.84422163 2778 Q9H0R4;Q9H0R4-2 HDHD2 Haloacid dehalogenase-like hydrolase domain-containing protein 2 yes no 0 0 0 0 By MS/MS 1 0 1 1 73.716 73.716 3 5.9858E-07 23701 20211116_3428_TMUAki_TMT10x_P_F1 105.65 93.436 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12062 2778 11207 64315 77938 77938 1 LLLDQEQK Unmodified 985.54441 0.5444108 370 O75937 DNAJC8 DnaJ homolog subfamily C member 8 yes yes 0 0 0 0 By MS/MS 4 0 1 1 49.876 50.008 2 0.0019529 14807 20211116_3442_TMUAki_TMT10x_S_F4 133.58 76.535 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12063 370 11208 64316 77939 77939 1 LLLDTFEYQGLVK Unmodified 1537.8392 0.83919583 2098 Q7Z7K6-3;Q7Z7K6 CENPV Centromere protein V yes no 0 0 0 0 By MS/MS By MS/MS 7.1 0.831 3 3 4 6 4 79.672 79.676 2;3 7.4999E-36 27704 20211116_3435_TMUAki_TMT10x_P_F7 265.36 232.52 65898000 108630000 408090 99265000 77805000 96997000 87913000 60362000 57743000 64936000 81126000 61357000 101330000 5558000 101890000 74853000 98131000 87711000 63357000 60894000 63232000 77535000 11 11 4 11 11 11 11 11 11 11 11 32774000 52389000 334470 48390000 31756000 60248000 41001000 30198000 28490000 32270000 38873000 30516000 48870000 2735800 49826000 30684000 59970000 40718000 32282000 29900000 31432000 37178000 6 6 2 6 6 6 6 6 6 6 6 33124000 56244000 73621 50874000 46049000 36749000 46912000 30163000 29253000 32666000 42253000 30841000 52462000 2822300 52068000 44169000 38160000 46993000 31075000 30994000 31800000 40357000 5 5 2 5 5 5 5 5 5 5 5 12348000000 6778000000 5570300000 12064 2098 11209 64317;64318;64319;64320;64321;64322;64323;64324;64325;64326 77940;77941;77942;77943;77944;77945;77946;77947;77948;77949;77950 77942 11 LLLEHLECLVSR Unmodified 1480.8072 0.8071842 1598 Q13136;Q13136-2;O75145;O75334;O75335;O75334-6;O75334-5;O75145-2;O75334-2;O75334-4;O75334-3 PPFIA1;PPFIA3;PPFIA2;PPFIA4 Liprin-alpha-1;Liprin-alpha-3;Liprin-alpha-2;Liprin-alpha-4 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 75.953 75.907 3 0.00018159 24729 20211116_3436_TMUAki_TMT10x_P_F8 85.672 65.343 2474900 3864100 9683.5 3405100 2644500 3658100 2888900 2400500 2308400 2564100 2723400 2304500 3603900 216590 3510000 2542400 3682700 2899600 2509000 2388500 2497500 2614300 2 2 2 2 2 2 2 2 2 2 2 1306000 1908600 9551.8 1653400 1238100 2241000 1389500 1152200 1195600 1381600 1349100 1216000 1780000 116220 1713600 1191500 2222200 1395500 1233200 1230200 1339800 1296700 1 1 1 1 1 1 1 1 1 1 1 1169000 1955400 131.69 1751700 1406400 1417100 1499400 1248300 1112800 1182500 1374300 1088400 1823900 100360 1796400 1350900 1460500 1504100 1275800 1158300 1157600 1317600 1 1 1 1 1 1 1 1 1 1 1 864620000 422030000 442590000 12065 1598 11210 64327;64328 77951;77952 77951 2 LLLENYEEYAAR Unmodified 1482.7355 0.73545904 1862 Q16763 UBE2S Ubiquitin-conjugating enzyme E2 S yes yes 0 0 0 0 By MS/MS By MS/MS 3.12 1.05 3 2 2 1 3 5 67.839 67.653 2 1.1254E-11 22072 20211116_3442_TMUAki_TMT10x_S_F4 168 135.16 63769000 106540000 204140 97016000 66340000 89304000 72350000 43083000 39397000 49436000 69314000 59373000 99374000 5067000 99530000 63745000 90414000 72053000 46327000 42583000 48020000 65939000 8 8 4 8 8 8 8 8 8 8 8 43651000 71681000 29211 63861000 41947000 69687000 49228000 29054000 27932000 34268000 44668000 40641000 66857000 3265000 65788000 40382000 69720000 48894000 31746000 29942000 33253000 42572000 5 5 2 5 5 5 5 5 5 5 5 20118000 34854000 174930 33155000 24393000 19617000 23122000 14030000 11465000 15168000 24646000 18733000 32516000 1802000 33741000 23362000 20694000 23160000 14581000 12642000 14767000 23367000 3 3 2 3 3 3 3 3 3 3 3 3825100000 1537000000 2288100000 12066 1862 11211 64329;64330;64331;64332;64333;64334;64335;64336 77953;77954;77955;77956;77957;77958;77959;77960;77961;77962 77961 10 LLLETHLPSK Unmodified 1149.6758 0.67575932 103 O00567 NOP56 Nucleolar protein 56 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 53.915 54.299 3 0.00023232 17581 20211116_3446_TMUAki_TMT10x_S_F7 102.06 79.232 7796200 13314000 7282.9 14810000 10844000 10403000 8328800 11356000 11291000 10717000 11707000 7258600 12429000 638750 14937000 10331000 10891000 8671400 11479000 11371000 10493000 11281000 4 4 1 4 4 4 4 4 4 4 4 2008700 3271600 0 3596500 4671800 5272700 2961800 2992900 2704200 2803900 2987900 1870000 3053900 162450 3671100 4433800 5216900 3085700 3152400 2772400 2746200 2873500 1 1 0 1 1 1 1 1 1 1 1 5787500 10043000 7282.9 11214000 6172200 5130200 5367000 8363100 8586300 7913500 8719300 5388600 9375300 476310 11266000 5897300 5674200 5585700 8326400 8598900 7747200 8407100 3 3 1 3 3 3 3 3 3 3 3 1230300000 348360000 881900000 12067 103 11212 64337;64338;64339;64340 77963;77964;77965;77966;77967 77965 5 LLLEYTDSSYEEK Unmodified 1588.7508 0.75083434 839 P28161;P28161-2;Q03013;P09488;P09488-2;Q03013-3;Q03013-2 GSTM2;GSTM4;GSTM1 Glutathione S-transferase Mu 2;Glutathione S-transferase Mu 4;Glutathione S-transferase Mu 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 69.307 68.865 2 6.8781E-34 24841 20211116_3441_TMUAki_TMT10x_S_F3 234.39 208.96 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12068 839 11213 64341 77968 77968 1 LLLGAGAVAYGVR Unmodified 1258.7398 0.73975656 2593 Q99623;Q99623-2 PHB2 Prohibitin-2 yes no 0 0 0 0 By MS/MS By MS/MS 3.78 0.786 4 3 2 4 5 66.527 66.385 2;3 3.0277E-25 23912 20211116_3441_TMUAki_TMT10x_S_F3 227.3 176.76 47109000 81484000 171010 77196000 61970000 73216000 56065000 56150000 53489000 53593000 62729000 43859000 76017000 3654400 78996000 59242000 74450000 57098000 57874000 54856000 52447000 60227000 10 10 5 10 10 10 10 10 10 10 10 22635000 37994000 96160 36471000 30822000 48439000 29370000 26551000 25751000 25857000 28544000 21074000 35446000 1819000 37493000 29506000 48116000 29755000 28079000 26455000 25282000 27449000 5 5 2 5 5 5 5 5 5 5 5 24474000 43490000 74849 40725000 31148000 24777000 26695000 29599000 27737000 27736000 34185000 22785000 40571000 1835400 41503000 29735000 26334000 27343000 29795000 28401000 27165000 32777000 5 5 3 5 5 5 5 5 5 5 5 5787400000 3085800000 2701600000 12069 2593 11214 64342;64343;64344;64345;64346;64347;64348;64349;64350 77969;77970;77971;77972;77973;77974;77975;77976;77977;77978;77979 77974 11 LLLIDWPELK Unmodified 1238.7275 0.72746054 20 A6NHR9;A6NHR9-2;A6NHR9-3 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 0 0 By MS/MS By matching 8 0 2 1 1 80.863 80.864 2 0.00019819 26761 20211116_3436_TMUAki_TMT10x_P_F8 118.18 69.894 3269200 5215200 201710 5869900 3728900 4809300 4062300 1845900 1815500 2317700 3417800 3045500 4868700 465470 5926200 3596100 4898200 4033500 2040500 2002100 2244100 3247400 1 1 1 1 1 1 1 1 1 1 1 3269200 5215200 201710 5869900 3728900 4809300 4062300 1845900 1815500 2317700 3417800 3045500 4868700 465470 5926200 3596100 4898200 4033500 2040500 2002100 2244100 3247400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 747510000 507340000 240170000 12070 20 11215 64351;64352 77980 77980 1 LLLIGDSGVGK Unmodified 1070.6336 0.63356015 2781;1367;1284;1290 P61026;P59190;P59190-2;P61006;P61006-2;Q92930;P51153;P62820;P62820-3;P62820-2;Q9H0U4;Q92928 RAB10;RAB15;RAB8A;RAB8B;RAB13;RAB1A;RAB1B;RAB1C Ras-related protein Rab-10;Ras-related protein Rab-15;Ras-related protein Rab-8A;Ras-related protein Rab-8B;Ras-related protein Rab-13;Ras-related protein Rab-1A;Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C no no 0 0 0 0 By MS/MS By MS/MS 6.43 2.32 2 2 4 6 7 7 66.99 67.129 2;3 1.9262E-23 23116 20211116_3446_TMUAki_TMT10x_S_F7 248.81 0 117660000 194960000 962380 207200000 156420000 177920000 129220000 140250000 121690000 130480000 153370000 109560000 181970000 10912000 210080000 149340000 182210000 132260000 144210000 125260000 127830000 146970000 16 16 12 16 16 16 16 16 16 16 16 59796000 95011000 633760 102180000 94364000 125890000 74708000 71007000 60892000 66591000 75121000 55680000 88683000 6016900 104090000 90024000 125550000 76379000 74833000 63056000 65218000 72026000 8 8 7 8 8 8 8 8 8 8 8 57863000 99950000 328630 105020000 62059000 52028000 54512000 69245000 60803000 63884000 78248000 53877000 93283000 4895200 105990000 59317000 56658000 55884000 69375000 62200000 62614000 74943000 8 8 5 8 8 8 8 8 8 8 8 22856000000 13341000000 9514700000 12071 1290;1284;1367;2781 11216 64353;64354;64355;64356;64357;64358;64359;64360;64361;64362;64363;64364;64365;64366 77981;77982;77983;77984;77985;77986;77987;77988;77989;77990;77991;77992;77993;77994;77995;77996;77997;77998 77993 18 LLLLAGVDRLDK Unmodified 1324.8078 0.80783613 3313 Q9Y570;Q9Y570-4;Q9Y570-2;Q9Y570-3 PPME1 Protein phosphatase methylesterase 1 yes no 0 0 0 1 By MS/MS By MS/MS 4.6 2.87 1 2 2 2 3 71.946 71.786 3 5.4943E-16 26148 20211116_3441_TMUAki_TMT10x_S_F3 174.73 142.67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12072 3313 11217 64367;64368;64369;64370;64371 77999;78000;78001;78002;78003 78002 5 LLLLESVSGLLQPR Unmodified 1536.9239 0.92392852 2173 Q8IZL8 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 2 4 4 5 5 81.781 81.783 2;3 2.6258E-24 26841 20211116_3445_TMUAki_TMT10x_S_F6 196.7 175.84 10258000 17459000 225410 17779000 12642000 16523000 13621000 10934000 10896000 11258000 14243000 9552600 16293000 1061000 18096000 12158000 16785000 13681000 11409000 11323000 10982000 13636000 12 12 8 12 12 12 12 12 12 12 12 5100600 8364200 71780 8260800 5695100 10033000 6244400 5174800 5252600 5698800 6686300 4749600 7804300 485630 8461200 5478100 10002000 6274600 5522200 5437900 5544100 6405700 6 6 4 6 6 6 6 6 6 6 6 5157400 9095200 153630 9518000 6947000 6490800 7376400 5759200 5643600 5559200 7556400 4803000 8488400 575340 9634800 6679900 6782700 7406100 5886500 5885100 5437600 7230100 6 6 4 6 6 6 6 6 6 6 6 3339900000 1060200000 2279700000 12073 2173 11218 64372;64373;64374;64375;64376;64377;64378;64379;64380;64381 78004;78005;78006;78007;78008;78009;78010;78011;78012;78013;78014;78015 78014 12 LLLLFADTAASASASAPAAAAASGDPGPALR Unmodified 2823.4767 0.47667217 2066 Q7LBC6 KDM3B Lysine-specific demethylase 3B yes yes 0 0 0 0 By MS/MS 2 0 1 1 81.606 81.591 3 1.8743E-20 27133 20211116_3440_TMUAki_TMT10x_S_F2 126.42 111.66 710530 1131800 0 1092100 843540 809920 900010 537600 612670 601880 798510 661410 1056000 41166 1112700 808970 836380 901070 562260 642460 585170 764540 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 710530 1131800 0 1092100 843540 809920 900010 537600 612670 601880 798510 661410 1056000 41166 1112700 808970 836380 901070 562260 642460 585170 764540 1 1 0 1 1 1 1 1 1 1 1 223560000 0 223560000 12074 2066 11219 64382 78016 78016 1 LLLLGAGESGK Unmodified 1056.6179 0.61791009 1393;563;1394;576 P63092;Q5JWF2;P63092-4;Q5JWF2-2;P63092-3;P63092-2;P38405;P38405-2;P19087;A8MTJ3;P11488;P08754;P04899;P04899-4;P09471;P09471-2;P63096 GNAS;GNAL;GNAT2;GNAT3;GNAT1;GNAI3;GNAI2;GNAO1;GNAI1 Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(olf) subunit alpha;Guanine nucleotide-binding protein G(t) subunit alpha-2;Guanine nucleotide-binding protein G(t) subunit alpha-3;Guanine nucleotide-binding protein G(t) subunit alpha-1;Guanine nucleotide-binding protein G(k) subunit alpha;Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(o) subunit alpha;Guanine nucleotide-binding protein G(i) subunit alpha-1 no no 0 0 0 0 By MS/MS By MS/MS 6.6 2.8 1 4 3 2 64.887 64.936 2;3 8.5661E-12 19697 20211116_3447_TMUAki_TMT10x_S_F8 134.84 0 67630000 112090000 841550 112880000 83603000 101210000 85206000 74046000 69174000 69333000 90254000 62976000 104600000 6609600 114920000 80254000 103210000 85848000 76514000 71822000 67909000 86412000 7 7 5 7 7 7 7 7 7 7 7 40627000 66013000 672130 65756000 53753000 74580000 54221000 44085000 42569000 42109000 53772000 37832000 61596000 4173100 67232000 51593000 74747000 54613000 46303000 44214000 41207000 51525000 5 5 3 5 5 5 5 5 5 5 5 27003000 46081000 169420 47122000 29850000 26625000 30986000 29960000 26605000 27225000 36482000 25144000 43002000 2436500 47693000 28660000 28463000 31235000 30211000 27608000 26702000 34887000 2 2 2 2 2 2 2 2 2 2 2 5322000000 3282000000 2040000000 12075 1393;563;576;1394 11220 64383;64384;64385;64386;64387 78017;78018;78019;78020;78021;78022;78023;78024;78025 78025 9 LLLNNDNLLR Unmodified 1196.6877 0.68772099 1192;1062 P52907;P47755;P47755-2 CAPZA1;CAPZA2 F-actin-capping protein subunit alpha-1;F-actin-capping protein subunit alpha-2 no no 0 0 0 0 By MS/MS By MS/MS 6.71 1.03 1 2 2 2 3 4 63.357 63.551 2 1.0107E-18 20769 20211116_3435_TMUAki_TMT10x_P_F7 243.38 189.41 55151000 91876000 120870 90369000 68229000 90797000 62299000 72283000 70137000 68393000 71697000 51351000 85724000 4779800 92304000 65273000 92056000 63745000 74310000 71065000 66956000 69115000 7 7 4 7 7 7 7 7 7 7 7 28844000 47200000 91165 46868000 38819000 62773000 37082000 38166000 36795000 35063000 36452000 26857000 44041000 2572700 48075000 37180000 62415000 37696000 39954000 37433000 34373000 35175000 3 3 2 3 3 3 3 3 3 3 3 26307000 44676000 29703 43501000 29410000 28024000 25217000 34116000 33342000 33329000 35245000 24495000 41683000 2207100 44230000 28093000 29641000 26049000 34356000 33632000 32584000 33941000 4 4 2 4 4 4 4 4 4 4 4 15837000000 8457600000 7379300000 12076 1192;1062 11221 64388;64389;64390;64391;64392;64393;64394 78026;78027;78028;78029;78030;78031;78032 78027 7 LLLNNGAK Unmodified 841.50215 0.50215205 680 P15121 AKR1B1 Aldose reductase yes yes 0 0 0 0 By MS/MS 1 0 1 1 46.493 46.261 2 0.0029348 14569 20211116_3439_TMUAki_TMT10x_S_F1 100.75 42.068 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12077 680 11222 64395 78033 78033 1 LLLPGELAK Unmodified 952.59572 0.59571809 290;528;2613;2191 Q93079;Q99877;P62807;P58876;O60814;Q5QNW6;Q99879;Q5QNW6-2;P57053;P33778;Q16778;P23527;P06899;Q8N257;A0A2R8Y619;Q99880;Q96A08 HIST1H2BH;HIST1H2BN;HIST1H2BC;HIST1H2BD;HIST1H2BK;HIST2H2BF;HIST1H2BM;H2BFS;HIST1H2BB;HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST1H2BL;HIST1H2BA Histone H2B type 1-H;Histone H2B type 1-N;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type 2-F;Histone H2B type 1-M;Histone H2B type F-S;Histone H2B type 1-B;Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Histone H2B type 1-L;Histone H2B type 1-A no no 0 0 0 0 By MS/MS By MS/MS 6.38 1.6 4 6 13 16 13 40 125 52 141 128 58.975 59.007 2;3 1.0729E-05 20842 20211116_3428_TMUAki_TMT10x_P_F1 109.71 52.433 4402900000 7041900000 66781000 7298600000 5341600000 7043900000 4414400000 6780300000 5686100000 5888200000 5674400000 4099700000 6571800000 349360000 7393500000 5095300000 7185700000 4565300000 6880300000 5719600000 5787500000 5474100000 239 239 96 236 236 238 236 238 234 238 236 1813400000 2759000000 20240000 2756800000 2553400000 4359000000 1921300000 2730800000 2175400000 2395000000 2164400000 1688400000 2574400000 113390000 2816200000 2432100000 4305300000 1989400000 2848600000 2201400000 2353000000 2088200000 122 122 50 120 120 122 119 122 120 122 120 2589500000 4282900000 46540000 4541800000 2788200000 2684900000 2493200000 4049500000 3510600000 3493200000 3510000000 2411300000 3997300000 235970000 4577200000 2663200000 2880400000 2575900000 4031700000 3518100000 3434500000 3386000000 117 117 46 116 116 116 117 116 114 116 116 1103100000000 591100000000 511990000000 12078 290;528;2191;2613 11223 64396;64397;64398;64399;64400;64401;64402;64403;64404;64405;64406;64407;64408;64409;64410;64411;64412;64413;64414;64415;64416;64417;64418;64419;64420;64421;64422;64423;64424;64425;64426;64427;64428;64429;64430;64431;64432;64433;64434;64435;64436;64437;64438;64439;64440;64441;64442;64443;64444;64445;64446;64447;64448;64449;64450;64451;64452;64453;64454;64455;64456;64457;64458;64459;64460;64461;64462;64463;64464;64465;64466;64467;64468;64469;64470;64471;64472;64473;64474;64475;64476;64477;64478;64479;64480;64481;64482;64483;64484;64485;64486;64487;64488;64489;64490;64491;64492;64493;64494;64495;64496;64497;64498;64499;64500;64501;64502;64503;64504;64505;64506;64507;64508;64509;64510;64511;64512;64513;64514;64515;64516;64517;64518;64519;64520;64521;64522;64523;64524;64525;64526;64527;64528;64529;64530;64531;64532;64533;64534;64535;64536;64537;64538;64539;64540;64541;64542;64543;64544;64545;64546;64547;64548;64549;64550;64551;64552;64553;64554;64555;64556;64557;64558;64559;64560;64561;64562;64563;64564;64565;64566;64567;64568;64569;64570;64571;64572;64573;64574;64575;64576;64577;64578;64579;64580;64581;64582;64583;64584;64585;64586;64587;64588;64589;64590;64591;64592;64593;64594;64595;64596;64597;64598;64599;64600;64601;64602;64603;64604;64605;64606;64607;64608;64609;64610;64611;64612;64613;64614;64615;64616;64617;64618;64619;64620;64621;64622;64623;64624;64625;64626;64627;64628;64629;64630;64631;64632;64633;64634;64635;64636;64637;64638;64639;64640;64641;64642;64643;64644;64645;64646;64647;64648;64649;64650;64651;64652;64653;64654;64655;64656;64657;64658;64659;64660;64661;64662;64663;64664 78034;78035;78036;78037;78038;78039;78040;78041;78042;78043;78044;78045;78046;78047;78048;78049;78050;78051;78052;78053;78054;78055;78056;78057;78058;78059;78060;78061;78062;78063;78064;78065;78066;78067;78068;78069;78070;78071;78072;78073;78074;78075;78076;78077;78078;78079;78080;78081;78082;78083;78084;78085;78086;78087;78088;78089;78090;78091;78092;78093;78094;78095;78096;78097;78098;78099;78100;78101;78102;78103;78104;78105;78106;78107;78108;78109;78110;78111;78112;78113;78114;78115;78116;78117;78118;78119;78120;78121;78122;78123;78124;78125;78126;78127;78128;78129;78130;78131;78132;78133;78134;78135;78136;78137;78138;78139;78140;78141;78142;78143;78144;78145;78146;78147;78148;78149;78150;78151;78152;78153;78154;78155;78156;78157;78158;78159;78160;78161;78162;78163;78164;78165;78166;78167;78168;78169;78170;78171;78172;78173;78174;78175;78176;78177;78178;78179;78180;78181;78182;78183;78184;78185;78186;78187;78188;78189;78190;78191;78192;78193;78194;78195;78196;78197;78198;78199;78200;78201;78202;78203;78204;78205;78206;78207;78208;78209;78210;78211;78212;78213;78214;78215;78216;78217;78218;78219;78220;78221;78222;78223;78224;78225;78226;78227;78228;78229;78230;78231;78232;78233;78234;78235;78236;78237;78238;78239;78240;78241;78242;78243;78244;78245;78246;78247;78248;78249;78250;78251;78252;78253;78254;78255;78256;78257;78258;78259;78260;78261;78262;78263;78264;78265;78266;78267;78268;78269;78270;78271;78272;78273;78274;78275;78276;78277;78278;78279;78280;78281;78282;78283;78284;78285;78286;78287;78288;78289;78290;78291;78292;78293;78294;78295;78296;78297;78298;78299;78300;78301;78302;78303;78304;78305 78035 272 LLLPHAFSR Unmodified 1052.6131 0.61309948 2359 Q92733 PRCC Proline-rich protein PRCC yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 50.118 50.265 3 1.7213E-05 14911 20211116_3442_TMUAki_TMT10x_S_F4 150.17 112.62 629340 1087200 1594.1 1202700 665660 573400 554810 840390 853950 783720 886650 585990 1014900 54171 1209400 635570 628960 577820 839280 856810 767750 854310 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 629340 1087200 1594.1 1202700 665660 573400 554810 840390 853950 783720 886650 585990 1014900 54171 1209400 635570 628960 577820 839280 856810 767750 854310 1 1 1 1 1 1 1 1 1 1 1 343890000 218080000 125800000 12079 2359 11224 64665;64666;64667 78306;78307 78307 2 LLLPLFR Unmodified 870.56911 0.5691094 2687 Q9BV86;Q9BV86-2 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 78.597 78.611 2 0.0019454 25555 20211116_3445_TMUAki_TMT10x_S_F6 174.26 166.85 19515000 30917000 33427 27283000 24616000 27050000 22853000 18816000 17968000 18470000 23003000 18170000 28835000 1628300 28087000 23555000 27386000 23122000 19536000 18671000 18053000 22034000 5 5 1 5 5 5 5 5 5 5 5 7865700 12742000 33427 11086000 8173700 14966000 9312300 7722100 7466800 7669200 9182700 7323800 11883000 657100 11484000 7866000 14844000 9329200 8215300 7737900 7492300 8805100 2 2 1 2 2 2 2 2 2 2 2 11649000 18175000 0 16198000 16442000 12084000 13541000 11094000 10501000 10800000 13820000 10846000 16952000 971240 16603000 15689000 12542000 13793000 11321000 10934000 10560000 13229000 3 3 0 3 3 3 3 3 3 3 3 2487500000 1209200000 1278200000 12080 2687 11225 64668;64669;64670;64671;64672;64673 78308;78309;78310;78311;78312 78311 5 LLLPTPTVK Unmodified 980.62702 0.62701821 2152 Q8IX12;Q8IX12-2 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 3 2 1 64.418 64.078 2 1.3806E-06 22866 20211116_3441_TMUAki_TMT10x_S_F3 170.22 85.151 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12081 2152 11226 64674;64675;64676 78313;78314;78315 78315 3 LLLPWLEAR Unmodified 1109.6597 0.65971533 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.67 2.43 1 2 1 2 3 3 79.667 79.637 2 5.5774E-08 29085 20211116_3441_TMUAki_TMT10x_S_F3 214.11 112.78 52750000 83391000 571960 85266000 67465000 63552000 67871000 25729000 20322000 32058000 56620000 49118000 77820000 4828000 86528000 64715000 65232000 67351000 28258000 24043000 31049000 53495000 5 5 3 5 5 5 5 5 5 5 5 30213000 47502000 563870 49058000 35953000 46531000 40873000 14629000 11794000 17948000 32205000 28134000 44330000 2991900 49900000 34624000 46841000 40301000 16583000 13995000 17392000 30435000 3 3 2 3 3 3 3 3 3 3 3 22538000 35889000 8088.2 36208000 31511000 17022000 26999000 11100000 8527500 14110000 24415000 20983000 33490000 1836100 36628000 30091000 18391000 27050000 11675000 10047000 13657000 23060000 2 2 1 2 2 2 2 2 2 2 2 8855100000 4749900000 4105200000 12082 1471 11227 64677;64678;64679;64680;64681;64682 78316;78317;78318;78319;78320;78321 78319 6 LLLQGEADQSLLTFIDK Unmodified 1903.0302 0.030244081 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 4.75 1.53 1 2 2 3 2 2 6 6 80.894 80.888 3 6.3336E-22 27447 20211116_3442_TMUAki_TMT10x_S_F4 172.91 153.33 22817000 36117000 290470 34982000 24033000 34745000 28319000 19821000 20361000 23355000 27200000 21246000 33697000 2025600 35764000 23159000 35075000 28255000 21011000 21305000 22664000 26028000 10 10 6 10 10 10 10 10 10 10 10 13506000 21805000 135140 20581000 13347000 24592000 15947000 12339000 12475000 14666000 16104000 12576000 20342000 1136900 21143000 12864000 24530000 15932000 13234000 12972000 14228000 15422000 6 6 3 6 6 6 6 6 6 6 6 9311400 14312000 155340 14401000 10686000 10153000 12372000 7481500 7886300 8689100 11097000 8670600 13355000 888690 14622000 10295000 10545000 12323000 7777700 8333200 8436400 10605000 4 4 3 4 4 4 4 4 4 4 4 6420700000 3758600000 2662100000 12083 1433 11228 64683;64684;64685;64686;64687;64688;64689;64690;64691;64692;64693;64694 78322;78323;78324;78325;78326;78327;78328;78329;78330;78331;78332;78333;78334 78330 13 LLLQGLMDSVEAK Unmodified 1415.7694 0.76940171 1953 Q5VYK3 ECM29 Proteasome-associated protein ECM29 homolog yes yes 0 0 0 0 By MS/MS 8 0 1 1 80.224 80.211 3 2.1517E-08 25882 20211116_3447_TMUAki_TMT10x_S_F8 109 86.464 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12084 1953 11229 64695 78335 78335 1 LLLQHAPLR Unmodified 1059.6553 0.65529865 3006 Q9NXF1;Q9NXF1-2 TEX10 Testis-expressed sequence 10 protein yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 42.474 42.172 3 1.0022E-05 12647 20211116_3430_TMUAki_TMT10x_P_F3 133.68 82.825 236760 392430 1839.3 446220 243730 262690 242400 373660 376410 317230 341450 220470 366380 21441 448680 233770 281420 250090 372630 375830 312150 330470 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 236760 392430 1839.3 446220 243730 262690 242400 373660 376410 317230 341450 220470 366380 21441 448680 233770 281420 250090 372630 375830 312150 330470 1 1 1 1 1 1 1 1 1 1 1 80817000 24168000 56649000 12085 3006 11230 64696;64697;64698 78336;78337 78336 2 LLLQQLEATLETGKR Unmodified 1711.9832 0.98323431 1745 Q14CX7;Q14CX7-2 NAA25 N-alpha-acetyltransferase 25, NatB auxiliary subunit yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 78.332 78.282 3 2.1785E-19 27069 20211116_3429_TMUAki_TMT10x_P_F2 169.37 121.6 4339100 6966300 45381 6140600 4099300 7784600 5137800 4052600 4065100 4572300 4857900 4040500 6497200 398680 6347300 3959400 7745200 5124000 4324300 4210600 4444100 4661700 1 1 1 1 1 1 1 1 1 1 1 4339100 6966300 45381 6140600 4099300 7784600 5137800 4052600 4065100 4572300 4857900 4040500 6497200 398680 6347300 3959400 7745200 5124000 4324300 4210600 4444100 4661700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1043200000 1043200000 0 12086 1745 11231 64699;64700 78338;78339 78338 2 LLLQVQHASK Unmodified 1135.6713 0.67134264 639;502;638 P05141;P12235;P12236 SLC25A5;SLC25A4;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS 3.33 1.25 1 1 1 1 2 44.681 44.367 3 0.015194 11250 20211116_3444_TMUAki_TMT10x_S_F5 62.78 42.993 8087600 13029000 0 13115000 16306000 16262000 11112000 8367800 9695800 8900700 11137000 7530300 12158000 769660 13420000 15503000 16195000 11499000 8922200 9977000 8670900 10699000 1 1 0 1 1 1 1 1 1 1 1 8087600 13029000 0 13115000 16306000 16262000 11112000 8367800 9695800 8900700 11137000 7530300 12158000 769660 13420000 15503000 16195000 11499000 8922200 9977000 8670900 10699000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 147810000 106060000 41753000 12087 502;638;639 11232 64701;64702;64703 78340;78341 78341 2 LLLSGTADGADLR Unmodified 1300.6987 0.69867961 314 O75179;O75179-3;O75179-6;O75179-7;O75179-2;O75179-5;O75179-4 ANKRD17 Ankyrin repeat domain-containing protein 17 yes no 0 0 0 0 By MS/MS 5 0 1 1 58.153 58.288 2 0.078642 16907 20211116_3444_TMUAki_TMT10x_S_F5 49.3 31.569 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12088 314 11233 64704 78342 78342 1 LLLSSETPIEGK Unmodified 1285.7129 0.71293269 2878 Q9HDC9;Q9HDC9-2 APMAP Adipocyte plasma membrane-associated protein yes no 0 0 0 0 By MS/MS By MS/MS 5.25 0.433 3 1 3 1 61.897 62.003 2;3 3.1713E-25 18360 20211116_3434_TMUAki_TMT10x_P_F6 256.91 202.76 14831000 25348000 225220 27576000 21752000 24606000 16636000 20450000 20149000 18134000 21023000 13811000 23661000 1536400 27931000 20742000 25157000 17251000 20933000 20376000 17806000 20253000 5 5 5 5 5 5 5 5 5 5 5 7942600 13200000 98252 14254000 14688000 18843000 10905000 10706000 10822000 9383600 10991000 7396100 12321000 844540 14535000 13995000 18730000 11257000 11256000 11019000 9219000 10597000 3 3 3 3 3 3 3 3 3 3 3 6888100 12148000 126970 13323000 7063800 5763300 5731300 9744300 9326900 8750800 10032000 6414500 11340000 691870 13395000 6747300 6427000 5994500 9676700 9356200 8587400 9655800 2 2 2 2 2 2 2 2 2 2 2 1121800000 844030000 277820000 12089 2878 11234 64705;64706;64707;64708 78343;78344;78345;78346;78347 78345 5 LLLSTLTLLSK Unmodified 1200.7693 0.76932535 2444 Q96EK6 GNPNAT1 Glucosamine 6-phosphate N-acetyltransferase yes yes 0 0 0 0 By MS/MS 8 0 1 1 81.637 81.641 2 1.2079E-07 27064 20211116_3436_TMUAki_TMT10x_P_F8 121.9 70.026 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12090 2444 11235 64709 78348 78348 1 LLLSTSLDAKDELEER Unmodified 1830.9575 0.95747307 1964 Q68E01;Q68E01-2 INTS3 Integrator complex subunit 3 yes no 0 0 0 1 By MS/MS 3 0 1 1 67.941 67.478 3 0.0057101 24285 20211116_3441_TMUAki_TMT10x_S_F3 61.524 42.928 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12091 1964 11236 64710 78349 78349 1 LLMEDGMQRNLK Oxidation (M) 1462.7272 0.72721932 2786 Q9H1K4 SLC25A18 Mitochondrial glutamate carrier 2 yes yes 0 0 1 1 By MS/MS By MS/MS 3.33 1.7 1 1 1 1 2 36.363 36.466 4 0.063488 8539 20211116_3428_TMUAki_TMT10x_P_F1 41.052 9.8245 2292400 2740800 6012.4 4215500 2574500 2069900 1619200 1767600 2116900 2084100 1975400 2134500 2563000 195850 4164200 2444700 2234200 1707700 1821900 2126800 2022400 1910000 3 3 2 3 3 3 3 3 3 3 3 726170 818870 1913.9 1313000 1148900 1078100 560600 547920 675240 573400 514050 676150 765940 67909 1301100 1086900 1100800 602950 584600 676210 558960 500880 1 1 1 1 1 1 1 1 1 1 1 1566200 1921900 4098.5 2902500 1425600 991810 1058600 1219700 1441700 1510700 1461400 1458300 1797000 127940 2863200 1357700 1133400 1104800 1237300 1450600 1463400 1409100 2 2 1 2 2 2 2 2 2 2 2 237040000 97324000 139720000 12092 2786 11237 64711;64712;64713 78350 78350 2950 1 LLMEHLDPDEEEEEGEVSASTNAR Oxidation (M) 2715.1817 0.18174829 1980 Q6KC79;Q6KC79-2 NIPBL Nipped-B-like protein yes no 0 0 1 0 By MS/MS 1 0 1 1 50.577 50.305 3 2.8155E-11 16205 20211116_3439_TMUAki_TMT10x_S_F1 103.25 100.81 731080 1277400 0 2034700 510400 658170 298110 2249800 1999800 1726900 1497700 680640 1194800 48805 2001700 483490 791170 366170 2191500 1942200 1708100 1460300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 731080 1277400 0 2034700 510400 658170 298110 2249800 1999800 1726900 1497700 680640 1194800 48805 2001700 483490 791170 366170 2191500 1942200 1708100 1460300 1 1 0 1 1 1 1 1 1 1 1 165890000 0 165890000 12093 1980 11238 64714 78351 78351 2536 1 LLMMAGIDDCYTSAR 2 Oxidation (M) 1747.7579 0.7579271 687 P15880 RPS2 40S ribosomal protein S2 yes yes 0 0 2 0 By MS/MS 4 0 1 1 55.022 55.18 2 1.4578E-10 16493 20211116_3431_TMUAki_TMT10x_P_F4 125.3 116.76 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12094 687 11239 64715 78352 78352 774;775 1 LLMMAGIDDCYTSAR Oxidation (M) 1731.763 0.76301248 687 P15880 RPS2 40S ribosomal protein S2 yes yes 0 0 1 0 By MS/MS 5.67 0.471 1 2 3 64.516 64.479 2;3 5.0319E-05 18727 20211116_3445_TMUAki_TMT10x_S_F6 90.444 84.204 3886500 6787600 94112 6446400 8513300 3543900 4034800 5607700 4036700 4544800 5876700 3619400 6332200 474730 6557100 8056100 3835700 4326900 5565600 4171800 4482500 5612100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3886500 6787600 94112 6446400 8513300 3543900 4034800 5607700 4036700 4544800 5876700 3619400 6332200 474730 6557100 8056100 3835700 4326900 5565600 4171800 4482500 5612100 2 2 2 2 2 2 2 2 2 2 2 681100000 0 681100000 12095 687 11239 64716;64717;64718 78353;78354;78355 78354 774;775 3 LLMSEDYFTQAMEVK 2 Oxidation (M) 1835.8321 0.8321379 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 2 0 By MS/MS 5 0 1 1 68.842 68.93 3 0.025145 22395 20211116_3433_TMUAki_TMT10x_P_F5 46.66 31.458 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12096 1018 11240 64719 78356 78356 1313;1314 1 LLMSEDYFTQAMEVK Oxidation (M) 1819.8372 0.83722328 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 6 0 2 1 1 76.215 76.169 3 0.017143 24560 20211116_3445_TMUAki_TMT10x_S_F6 44.807 20.425 2841100 4651900 134860 4014500 4143000 3831700 3764000 4560900 3549500 4106700 3538400 2646300 4338400 379460 4137800 3971100 3931100 3831200 4586800 3620000 4029500 3413700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2841100 4651900 134860 4014500 4143000 3831700 3764000 4560900 3549500 4106700 3538400 2646300 4338400 379460 4137800 3971100 3931100 3831200 4586800 3620000 4029500 3413700 1 1 1 1 1 1 1 1 1 1 1 222730000 0 222730000 12097 1018 11240 64720;64721 78357;78358 78358 1313;1314 2 LLNENSYVPR Unmodified 1203.6248 0.62478638 480 P02786 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes yes 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 49.2 49.353 2 6.8115E-11 13577 20211116_3445_TMUAki_TMT10x_S_F6 205.83 160.85 18191000 29792000 62822 37540000 35070000 36199000 20469000 26643000 28184000 21303000 26689000 16937000 27828000 1580400 37730000 33249000 36746000 21765000 27411000 28282000 21025000 25793000 6 6 1 6 6 6 6 6 6 6 6 11258000 18581000 62822 23110000 30139000 31903000 16483000 16941000 17581000 13933000 16958000 10482000 17355000 1159100 23388000 28553000 31622000 17468000 17889000 17816000 13732000 16378000 4 4 1 4 4 4 4 4 4 4 4 6933800 11211000 0 14430000 4931000 4296700 3985600 9701900 10602000 7369900 9731400 6455100 10473000 421240 14342000 4696200 5123700 4297000 9521700 10466000 7293900 9414500 2 2 0 2 2 2 2 2 2 2 2 1668600000 1015000000 653540000 12098 480 11241 64722;64723;64724;64725;64726 78359;78360;78361;78362;78363;78364 78364 6 LLNFPTIVER Unmodified 1200.6867 0.68665836 233 O43681 ASNA1 ATPase ASNA1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 73.008 72.997 2 1.5967E-09 23461 20211116_3436_TMUAki_TMT10x_P_F8 185.6 112.81 18425000 30233000 72707 28112000 20905000 28971000 22240000 19918000 18914000 20102000 22830000 17156000 28202000 1623600 28842000 20082000 29258000 22386000 20714000 19526000 19625000 21902000 4 4 3 4 4 4 4 4 4 4 4 10265000 16478000 6411.1 15608000 10285000 19191000 12207000 10417000 10167000 10509000 11965000 9557800 15372000 850920 16038000 9909900 19133000 12219000 11037000 10496000 10260000 11487000 2 2 1 2 2 2 2 2 2 2 2 8159500 13755000 66296 12505000 10620000 9779900 10033000 9500700 8746600 9593100 10865000 7597800 12830000 772720 12804000 10172000 10125000 10168000 9676500 9029600 9365300 10415000 2 2 2 2 2 2 2 2 2 2 2 5529700000 2838400000 2691400000 12099 233 11242 64727;64728;64729;64730;64731;64732 78365;78366;78367;78368;78369 78367 5 LLNIWQER Unmodified 1070.5873 0.58727866 2905 Q9NQG5 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B yes yes 0 0 0 0 By matching By MS/MS 8 0 2 1 1 65.736 65.787 2 0.051902 20042 20211116_3447_TMUAki_TMT10x_S_F8 58.426 27.054 4709700 7988300 0 8061300 5354300 4286600 4662100 5225900 5015700 5669300 6229900 4385000 7454200 365660 8162300 5114300 4620900 4776100 5279200 5130200 5518700 5972200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4709700 7988300 0 8061300 5354300 4286600 4662100 5225900 5015700 5669300 6229900 4385000 7454200 365660 8162300 5114300 4620900 4776100 5279200 5130200 5518700 5972200 1 1 0 1 1 1 1 1 1 1 1 916210000 520130000 396080000 12100 2905 11243 64733;64734 78370 78370 1 LLNNAFEELVAFQR Unmodified 1662.873 0.87295558 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 0 By MS/MS By MS/MS 7 0.775 3 4 3 5 5 80.28 80.291 2;3 1.9145E-99 25910 20211116_3447_TMUAki_TMT10x_S_F8 361.9 290.4 31659000 54173000 114780 47509000 35302000 44809000 38818000 27321000 27886000 30432000 37420000 29474000 50525000 2103800 48897000 33906000 45422000 38852000 28753000 29186000 29593000 35803000 11 11 3 11 11 11 11 11 11 11 11 14994000 23901000 114780 22514000 13618000 25556000 16812000 12972000 13405000 14862000 17406000 13960000 22297000 1174000 23112000 13135000 25565000 16780000 13881000 13928000 14438000 16667000 7 7 3 7 7 7 7 7 7 7 7 16666000 30272000 0 24995000 21684000 19253000 22006000 14348000 14482000 15569000 20014000 15514000 28227000 929790 25786000 20771000 19857000 22072000 14872000 15258000 15156000 19135000 4 4 0 4 4 4 4 4 4 4 4 12790000000 5746300000 7043700000 12101 799 11244 64735;64736;64737;64738;64739;64740;64741;64742;64743;64744 78371;78372;78373;78374;78375;78376;78377;78378;78379;78380;78381;78382 78381 12 LLNQLQYCEEAGIPLVAIIGEQELK Unmodified 2840.4994 0.49938144 637 P12081;P12081-4;P12081-3;P12081-2 HARS Histidine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS 4 0 1 1 81.777 81.785 3 7.1271E-06 27412 20211116_3431_TMUAki_TMT10x_P_F4 71.678 63.456 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12102 637 11245 64745 78383 78383 1 LLNTFLER Unmodified 1004.5655 0.56548059 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 66.13 66.164 2 0.0016603 20140 20211116_3447_TMUAki_TMT10x_S_F8 119.07 71.986 7359500 12345000 42643 11680000 8320200 10588000 8353600 8213400 8026100 8540500 9393800 6852600 11516000 647100 11946000 7980100 10800000 8461500 8480400 8228100 8327600 9019500 2 2 1 2 2 2 2 2 2 2 2 2734300 4416600 42643 4160500 3601600 5711400 3420600 3116300 3097500 3319900 3406000 2546200 4120200 278580 4285600 3451400 5664400 3469100 3305500 3176300 3234000 3276100 1 1 1 1 1 1 1 1 1 1 1 4625100 7927900 0 7519800 4718500 4876200 4933000 5097100 4928600 5220600 5987800 4306300 7396100 368510 7660700 4528700 5135600 4992400 5174900 5051800 5093600 5743400 1 1 0 1 1 1 1 1 1 1 1 954170000 484460000 469710000 12103 1695 11246 64746;64747 78384;78385 78385 2 LLNTWTNRYPDAK Unmodified 1590.8154 0.8154407 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 53.367 53.15 3 0.00027092 15599 20211116_3440_TMUAki_TMT10x_S_F2 82.529 58.698 9710600 16936000 142850 19921000 18902000 16421000 12956000 9987100 8720100 10527000 14513000 9042500 15815000 1066900 20060000 17983000 16800000 13322000 10495000 9262100 10259000 13821000 2 2 2 2 2 2 2 2 2 2 2 4747400 7903700 80540 9008500 14488000 13218000 9950100 5142200 4530900 5128400 7001100 4420900 7379100 605070 9175100 13782000 13025000 10162000 5635400 4934200 5009300 6677300 1 1 1 1 1 1 1 1 1 1 1 4963200 9032800 62307 10912000 4414300 3203000 3005900 4844800 4189300 5398800 7511800 4621700 8435500 461860 10884000 4201000 3775400 3159300 4859600 4328000 5249900 7143500 1 1 1 1 1 1 1 1 1 1 1 525240000 306520000 218710000 12104 1433 11247 64748;64749 78386;78387 78387 2 LLPAELPAK Unmodified 950.58007 0.58006802 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS 7 0 1 1 59.8 60.524 2 0.0022004 19571 20211116_3435_TMUAki_TMT10x_P_F7 82.279 58.249 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12105 1433 11248 64750 78388 78388 1 LLPAELPAKR Unmodified 1106.6812 0.68117905 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 48.886 48.707 3 5.784E-05 15553 20211116_3439_TMUAki_TMT10x_S_F1 91.636 53.94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12106 1433 11249 64751;64752 78389;78390 78389 2 LLPALASVPALPSDS Unmodified 1449.8079 0.80789571 1504 Q03154;Q03154-2;Q03154-3;Q03154-4 ACY1 Aminoacylase-1 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 2 4 3 3 81.212 81.222 2;3 3.2105E-09 28331 20211116_3435_TMUAki_TMT10x_P_F7 125.82 110.16 5411100 9000500 67254 9008100 5967000 6830400 6762200 4213500 4273800 4162700 6385400 5038700 8398400 450610 9156700 5745300 7033900 6740600 4414500 4531600 4067600 6094400 5 5 3 5 5 5 5 5 5 5 5 2305800 3872300 61131 3659000 2305600 3449500 2566500 1810200 1954800 1721200 2538200 2147400 3612400 248130 3744700 2220900 3490200 2570700 1920500 2036200 1684700 2430500 2 2 2 2 2 2 2 2 2 2 2 3105300 5128200 6123.1 5349100 3661400 3381000 4195800 2403300 2318900 2441500 3847100 2891400 4786000 202480 5412000 3524400 3543700 4169900 2494000 2495500 2382900 3663900 3 3 1 3 3 3 3 3 3 3 3 1175700000 580470000 595200000 12107 1504 11250 64753;64754;64755;64756;64757;64758 78391;78392;78393;78394;78395 78391 5 LLPALTVLDIHDNQLTSLPSAIR Unmodified 2499.4061 0.40607341 2839 Q9H9A6 LRRC40 Leucine-rich repeat-containing protein 40 yes yes 0 0 0 0 By MS/MS 2 0 1 1 79.427 79.411 3 2.9277E-21 27504 20211116_3429_TMUAki_TMT10x_P_F2 155.49 149.23 3110400 5074000 89353 4337600 2647500 5364200 2940000 2697800 2937300 3160100 3888300 2896800 4731900 334670 4492400 2551300 5341400 2966800 2891300 3022000 3067300 3721500 1 1 1 1 1 1 1 1 1 1 1 3110400 5074000 89353 4337600 2647500 5364200 2940000 2697800 2937300 3160100 3888300 2896800 4731900 334670 4492400 2551300 5341400 2966800 2891300 3022000 3067300 3721500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1866600000 1866600000 0 12108 2839 11251 64759 78396 78396 1 LLPDTILEK Unmodified 1040.6118 0.61176208 3185 Q9UMY1;Q9UMY1-2 NOL7 Nucleolar protein 7 yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 70.436 70.45 2 1.8605E-05 23023 20211116_3433_TMUAki_TMT10x_P_F5 147.51 92.959 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12109 3185 11252 64760;64761;64762 78397;78398;78399 78397 3 LLPEQLIK Unmodified 952.59572 0.59571809 2352 Q92621 NUP205 Nuclear pore complex protein Nup205 yes yes 0 0 0 0 By MS/MS 6 0 1 1 66.442 66.427 2 0.0026472 19994 20211116_3434_TMUAki_TMT10x_P_F6 107.01 42.743 3945800 6918000 51768 7288700 6045300 8549900 5126400 4994400 4647700 4574200 5186500 3674400 6456600 404790 7428300 5776600 8552400 5233200 5244800 4768300 4484700 4986500 1 1 1 1 1 1 1 1 1 1 1 3945800 6918000 51768 7288700 6045300 8549900 5126400 4994400 4647700 4574200 5186500 3674400 6456600 404790 7428300 5776600 8552400 5233200 5244800 4768300 4484700 4986500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72535000000 72535000000 0 12110 2352 11253 64763 78400 78400 1 LLPEYPGVLSDVQEEK Unmodified 1814.9302 0.93019569 464 P00374;P00374-2 DHFR Dihydrofolate reductase yes no 0 0 0 0 By MS/MS By MS/MS 3.57 1.35 1 2 4 3 3 1 5 9 76.331 76.273 2;3 3.0887E-50 26252 20211116_3429_TMUAki_TMT10x_P_F2 225.15 204.28 55639000 100840000 354490 89840000 66481000 78541000 64745000 54802000 51758000 55689000 70548000 51806000 94057000 4892600 92260000 63710000 80176000 65363000 56943000 53890000 54352000 67473000 12 12 7 12 12 12 12 12 12 12 12 23390000 40811000 234570 37736000 22044000 39999000 25627000 20791000 20437000 22905000 29055000 21779000 38070000 2047600 38748000 21235000 40177000 25647000 22172000 21324000 22283000 27762000 5 5 3 5 5 5 5 5 5 5 5 32249000 60032000 119920 52104000 44437000 38543000 39118000 34010000 31322000 32784000 41492000 30027000 55987000 2845000 53512000 42475000 39999000 39716000 34771000 32566000 32069000 39711000 7 7 4 7 7 7 7 7 7 7 7 7546100000 3152500000 4393600000 12111 464 11254 64764;64765;64766;64767;64768;64769;64770;64771;64772;64773;64774;64775;64776;64777 78401;78402;78403;78404;78405;78406;78407;78408;78409;78410;78411;78412;78413;78414 78401 14 LLPGPENHR Unmodified 1031.5512 0.55122751 2173 Q8IZL8 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.86 0.35 1 6 2 5 29.749 29.765 3 2.2791E-06 7720 20211116_3433_TMUAki_TMT10x_P_F5 162.97 138.82 1459100 2467400 20063 2439200 3009000 2855800 1934300 1955600 2021500 1731300 2191000 1358600 2302200 155550 2496600 2859000 2863400 2020900 2027000 2058700 1700200 2108300 4 4 2 4 4 4 4 4 4 4 4 1050000 1806600 13018 1797600 2534900 2387400 1455500 1535200 1610000 1324200 1611500 977680 1685700 115040 1843300 2403900 2376600 1537600 1597500 1631200 1302000 1554500 2 2 1 2 2 2 2 2 2 2 2 409110 660850 7044.6 641550 474150 468450 478760 420390 411490 407100 579480 380960 616570 40515 653260 455120 486820 483300 429450 427520 398150 553810 2 2 1 2 2 2 2 2 2 2 2 171700000 162210000 9492700 12112 2173 11255 64778;64779;64780;64781;64782;64783;64784 78415;78416;78417;78418;78419;78420;78421;78422 78416 8 LLPHQLYGVVPQA Unmodified 1433.8031 0.8030851 726 P18887 XRCC1 DNA repair protein XRCC1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.8 3.43 3 2 3 2 67.364 67.226 2;3 1.8078E-06 23071 20211116_3439_TMUAki_TMT10x_S_F1 118.33 96.886 6071800 11437000 211770 9569000 7457900 9035000 7825300 6790300 6852600 6688500 8436700 5654900 10665000 697410 9886000 7171600 9186700 7888200 7014100 7070100 6536500 8089500 4 4 3 4 4 4 4 4 4 4 4 2266600 3645900 134320 2834600 2203800 4445600 2936200 2054100 2411900 2178500 2890700 2111400 3399000 312210 2973200 2139600 4375800 2923800 2212900 2493600 2122500 2773700 1 1 1 1 1 1 1 1 1 1 1 3805200 7791300 77452 6734400 5254200 4589400 4889000 4736200 4440700 4510000 5546000 3543400 7266100 385200 6912800 5032000 4811000 4964300 4801300 4576500 4414000 5315800 3 3 2 3 3 3 3 3 3 3 3 1280400000 614340000 666080000 12113 726 11256 64785;64786;64787;64788;64789 78423;78424;78425;78426;78427;78428 78426 6 LLPIDGANDLFFQPPPLTPTSK Unmodified 2380.2678 0.26784859 270 O60502;O60502-4 MGEA5 Protein O-GlcNAcase yes no 0 0 0 0 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 80.995 81 3 1.7718E-11 26790 20211116_3436_TMUAki_TMT10x_P_F8 120.15 112.35 16547000 25661000 192090 25484000 18380000 22696000 20934000 16669000 17459000 17819000 19972000 15405000 23944000 1232000 25969000 17677000 23157000 20993000 17286000 18003000 17355000 19189000 9 9 4 9 9 9 9 9 9 9 9 6826000 10131000 166330 10376000 6421500 12078000 7984800 6972700 7177700 7449100 8044300 6356200 9454400 621390 10593000 6200500 12085000 7992600 7361300 7368200 7255500 7733200 4 4 2 4 4 4 4 4 4 4 4 9720600 15530000 25760 15108000 11959000 10617000 12949000 9696300 10281000 10369000 11928000 9049000 14489000 610610 15376000 11477000 11073000 13000000 9925100 10634000 10100000 11455000 5 5 2 5 5 5 5 5 5 5 5 4251500000 2533900000 1717700000 12114 270 11257 64790;64791;64792;64793;64794;64795 78429;78430;78431;78432;78433;78434;78435;78436;78437 78430 9 LLPLEEHYR Unmodified 1168.6241 0.6240581 2809 Q9H4M9;Q9NZN4;Q9NZN3;Q9NZN3-2 EHD1;EHD2;EHD3 EH domain-containing protein 1;EH domain-containing protein 2;EH domain-containing protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 45.747 45.911 3 4.551E-06 13083 20211116_3442_TMUAki_TMT10x_S_F4 158.87 136.13 1255700 1953500 1714.5 2251300 2167700 2147100 1465600 1583800 1572100 1563600 1686600 1169200 1823900 118260 2274100 2060900 2181100 1526600 1638100 1598800 1527900 1623400 2 2 1 2 2 2 2 2 2 2 2 778560 1158700 1714.5 1329600 1712700 1689100 1054800 954780 960390 951880 1032400 724930 1081900 79229 1349700 1625800 1682100 1101400 1007700 983710 929780 993690 1 1 1 1 1 1 1 1 1 1 1 477120 794720 0 921740 454940 457990 410840 629040 611730 611690 654170 444240 742030 39035 924420 435090 499020 425260 630420 615040 598120 629740 1 1 0 1 1 1 1 1 1 1 1 454780000 175780000 278990000 12115 2809 11258 64796;64797 78438;78439 78439 2 LLPLVSDEVFIR Unmodified 1399.8075 0.80750177 620 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 By MS/MS 7 0 1 1 79.394 79.434 2 9.9204E-09 28034 20211116_3446_TMUAki_TMT10x_S_F7 147.78 105.44 3343000 4784400 0 5127400 3329100 4274900 3872800 2781600 2975700 3852400 3896100 3112500 4465700 258630 5193800 3204600 4374000 3872100 2935600 3099100 3718400 3730000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3343000 4784400 0 5127400 3329100 4274900 3872800 2781600 2975700 3852400 3896100 3112500 4465700 258630 5193800 3204600 4374000 3872100 2935600 3099100 3718400 3730000 1 1 0 1 1 1 1 1 1 1 1 739680000 0 739680000 12116 620 11259 64798 78440 78440 1 LLPLVSDEVFIRDVAK Unmodified 1813.0349 0.034935528 620 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 1 By MS/MS 7.5 0.5 1 1 2 78.333 78.36 3 2.5169E-11 27165 20211116_3435_TMUAki_TMT10x_P_F7 138.91 113.97 11518000 17403000 244340 15925000 10058000 20320000 13492000 12013000 10628000 11810000 13775000 10727000 16233000 1162200 16416000 9745300 20243000 13417000 12627000 11049000 11543000 13191000 2 2 2 2 2 2 2 2 2 2 2 11518000 17403000 244340 15925000 10058000 20320000 13492000 12013000 10628000 11810000 13775000 10727000 16233000 1162200 16416000 9745300 20243000 13417000 12627000 11049000 11543000 13191000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1891100000 1891100000 0 12117 620 11260 64799;64800 78441;78442 78441 2 LLPPYLR Unmodified 870.53272 0.5327239 1031 P43490 NAMPT Nicotinamide phosphoribosyltransferase yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 60.639 60.329 2 0.0014663 18442 20211116_3440_TMUAki_TMT10x_S_F2 137.2 54.897 11018000 17791000 18069 18680000 14276000 10155000 11146000 12703000 13044000 12666000 14496000 10258000 16604000 899120 18866000 13606000 10928000 11529000 12786000 13238000 12372000 13938000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11018000 17791000 18069 18680000 14276000 10155000 11146000 12703000 13044000 12666000 14496000 10258000 16604000 899120 18866000 13606000 10928000 11529000 12786000 13238000 12372000 13938000 3 3 1 3 3 3 3 3 3 3 3 1579400000 561050000 1018300000 12118 1031 11261 64801;64802;64803;64804 78443;78444;78445;78446 78444 4 LLPQLTYLDGYDRDDK Unmodified 1923.9578 0.95780742 977 P39687 ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member A yes yes 0 0 0 1 By MS/MS 6 0 1 1 72.084 71.995 3 2.5982E-06 22870 20211116_3445_TMUAki_TMT10x_S_F6 92.439 74.027 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12119 977 11262 64805 78447 78447 1 LLPSLIGR Unmodified 867.55419 0.55418762 377 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 2 3 64.117 63.819 2 0.00013424 20038 20211116_3431_TMUAki_TMT10x_P_F4 164.52 82.21 10817000 17091000 19229 18292000 14113000 15460000 11475000 14959000 14131000 13718000 15375000 10071000 15952000 876600 18533000 13462000 15913000 11859000 15197000 14303000 13449000 14793000 3 3 1 3 3 3 3 3 3 3 3 4182900 6328400 0 6858100 6696400 9744500 5482300 5800300 5762100 5162800 6027000 3894400 5907000 340070 7002200 6387600 9660400 5633100 6077300 5859100 5068500 5805800 1 1 0 1 1 1 1 1 1 1 1 6634300 10763000 19229 11434000 7417000 5715700 5992300 9158500 8368500 8555100 9348000 6177000 10045000 536530 11531000 7074400 6252800 6226300 9120000 8444300 8380200 8987400 2 2 1 2 2 2 2 2 2 2 2 1273100000 402920000 870170000 12120 377 11263 64806;64807;64808;64809;64810 78448;78449;78450;78451;78452 78449 5 LLPVLLSTAQEADPEVR Unmodified 1850.0149 0.014928368 2289 Q8TEX9;Q8TEX9-2 IPO4 Importin-4 yes no 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 79.494 79.477 3 3.0661E-05 25545 20211116_3434_TMUAki_TMT10x_P_F6 82.349 72.297 6145900 9844700 25083 8275500 6109400 12469000 6866800 6765500 6419600 6781700 7137000 5722600 9180300 532400 8615900 5878600 12316000 6911900 7167100 6575800 6622700 6862600 2 2 2 2 2 2 2 2 2 2 2 6145900 9844700 25083 8275500 6109400 12469000 6866800 6765500 6419600 6781700 7137000 5722600 9180300 532400 8615900 5878600 12316000 6911900 7167100 6575800 6622700 6862600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 285260000 285260000 0 12121 2289 11264 64811;64812 78453;78454;78455 78454 3 LLQAAAGASAR Unmodified 1027.5774 0.57744226 2564 Q96T76;Q96T76-9;Q96T76-8 MMS19 MMS19 nucleotide excision repair protein homolog yes no 0 0 0 0 By MS/MS 1 0 1 1 40.745 40.583 2 3.2032E-07 12236 20211116_3439_TMUAki_TMT10x_S_F1 115.06 66.713 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12122 2564 11265 64813 78456 78456 1 LLQAETASNSAR Unmodified 1259.647 0.64697839 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.17 0.373 5 1 1 5 33.123 33.176 2 5.8902E-24 9084 20211116_3431_TMUAki_TMT10x_P_F4 244.74 187.56 1020900 1770300 36861 1777400 1981200 1892500 1307000 1073500 1184100 922300 1445200 950800 1651900 130140 1814400 1884800 1902500 1357200 1128300 1219300 906990 1386000 5 5 2 5 5 5 5 5 5 5 5 861910 1533000 36010 1490200 1815300 1772400 1117500 917410 1004300 775320 1219700 802790 1430300 118370 1527500 1725200 1769000 1166600 971650 1034300 763070 1169900 1 1 1 1 1 1 1 1 1 1 1 158970 237200 851.31 287180 165910 120160 189470 156110 179770 146980 225460 148000 221520 11765 286940 159580 133520 190650 156630 184930 143920 216080 4 4 1 4 4 4 4 4 4 4 4 64929000 58050000 6878500 12123 1741 11266 64814;64815;64816;64817;64818;64819 78457;78458;78459;78460;78461;78462;78463 78457 7 LLQAFLER Unmodified 988.57057 0.57056597 1234 P55060;P55060-3;P55060-4 CSE1L Exportin-2 yes no 0 0 0 0 By MS/MS By MS/MS 4.14 3.09 2 2 1 2 4 3 73.878 73.822 2 0.00048077 23776 20211116_3436_TMUAki_TMT10x_P_F8 164.77 88 24644000 40872000 0 38494000 24668000 37541000 25537000 24540000 23458000 26706000 28635000 22945000 38129000 1875300 39424000 23664000 38011000 25793000 25671000 24139000 25993000 27463000 5 5 0 5 5 5 5 5 5 5 5 12156000 19010000 0 17921000 14773000 24676000 11947000 11387000 11374000 12700000 13180000 11318000 17734000 933300 18460000 14086000 24423000 12249000 12287000 11660000 12349000 12658000 2 2 0 2 2 2 2 2 2 2 2 12488000 21862000 0 20573000 9895900 12865000 13589000 13153000 12084000 14006000 15455000 11627000 20395000 941950 20964000 9577800 13588000 13544000 13384000 12479000 13644000 14804000 3 3 0 3 3 3 3 3 3 3 3 4795600000 2792800000 2002800000 12124 1234 11267 64820;64821;64822;64823;64824;64825;64826 78464;78465;78466;78467;78468;78469;78470 78467 7 LLQALAQYQNHLQEQPR Unmodified 2049.0756 0.075571565 2629 Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 66.981 66.709 3 2.0911E-22 22889 20211116_3430_TMUAki_TMT10x_P_F3 177.58 145.91 7883000 12564000 89105 13416000 8512600 11273000 9760200 7122200 6511800 6544700 9388900 7340400 11727000 725730 13594000 8197800 11524000 9734400 7433500 6868900 6415600 8968000 3 3 2 3 3 3 3 3 3 3 3 5203500 7770600 53825 8293400 5593400 8976100 6461100 4801200 4365200 4354100 6102200 4845200 7252700 467350 8434000 5387100 9008300 6443500 5078800 4594200 4270800 5832800 2 2 1 2 2 2 2 2 2 2 2 2679500 4793800 35280 5122300 2919200 2297400 3299000 2321000 2146600 2190600 3286700 2495200 4474300 258390 5160200 2810700 2515200 3290800 2354700 2274700 2144800 3135200 1 1 1 1 1 1 1 1 1 1 1 1238600000 950020000 288530000 12125 2629 11268 64827;64828;64829 78471;78472;78473 78472 3 LLQAMEPVHVAR Oxidation (M) 1378.7391 0.73910463 1843 Q16401;Q16401-2 PSMD5 26S proteasome non-ATPase regulatory subunit 5 yes no 0 0 1 0 By MS/MS 6 0 1 1 37.108 37.101 3 0.023299 8318 20211116_3434_TMUAki_TMT10x_P_F6 49.269 30.489 266570 483010 5576.1 504360 730420 642840 373660 366410 383890 348150 462480 248240 450780 33794 515100 691730 640130 397990 385940 392890 340770 443700 1 1 1 1 1 1 1 1 1 1 1 266570 483010 5576.1 504360 730420 642840 373660 366410 383890 348150 462480 248240 450780 33794 515100 691730 640130 397990 385940 392890 340770 443700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27704000 27704000 0 12126 1843 11269 64830 78474 78474 2453 1 LLQAQGVEVPSK Unmodified 1267.7136 0.71360139 295 O60841 EIF5B Eukaryotic translation initiation factor 5B yes yes 0 0 0 0 By MS/MS 6 0 1 1 55.424 55.512 3 0.078954 15729 20211116_3434_TMUAki_TMT10x_P_F6 32.43 12.668 5369300 7919600 0 8905600 7998900 10406000 5837100 5467100 6190500 5464100 6736100 4998600 7393500 386450 9037900 7609100 10397000 6044800 5807700 6301600 5336600 6481200 1 1 0 1 1 1 1 1 1 1 1 5369300 7919600 0 8905600 7998900 10406000 5837100 5467100 6190500 5464100 6736100 4998600 7393500 386450 9037900 7609100 10397000 6044800 5807700 6301600 5336600 6481200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 146300000 146300000 0 12127 295 11270 64831 78475 78475 1 LLQDFFNGK Unmodified 1080.5604 0.56039521 615;701 P11142;P11142-2;P54652;P17066 HSPA8;HSPA2;HSPA6 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 6 no no 0 0 0 0 By MS/MS By MS/MS 3.91 2.71 14 32 13 1 2 3 5 22 65 27 49.056 48.987 2;3 1.3592E-10 25575 20211116_3436_TMUAki_TMT10x_P_F8 222.18 161.39 547180000 843690000 2472800 949370000 417880000 733510000 475620000 431860000 491740000 497190000 585320000 509470000 787640000 39221000 957820000 402060000 753790000 479670000 456270000 502880000 482890000 561740000 58 59 21 59 59 59 58 59 59 59 59 262190000 390390000 1893800 430080000 264440000 389560000 250260000 182230000 252060000 236120000 276500000 244130000 364430000 22174000 435350000 253230000 394700000 254650000 197350000 257220000 228390000 265970000 41 42 15 42 42 42 42 42 42 42 42 284990000 453290000 578960 519290000 153440000 343950000 225360000 249640000 239680000 261070000 308830000 265340000 423220000 17047000 522480000 148830000 359090000 225020000 258920000 245660000 254500000 295770000 17 17 6 17 17 17 16 17 17 17 17 54723000000 29951000000 24772000000 12128 615;701 11271 64832;64833;64834;64835;64836;64837;64838;64839;64840;64841;64842;64843;64844;64845;64846;64847;64848;64849;64850;64851;64852;64853;64854;64855;64856;64857;64858;64859;64860;64861;64862;64863;64864;64865;64866;64867;64868;64869;64870;64871;64872;64873;64874;64875;64876;64877;64878;64879;64880;64881;64882;64883;64884;64885;64886;64887;64888;64889;64890;64891;64892;64893;64894;64895;64896;64897;64898;64899;64900;64901;64902;64903;64904;64905;64906;64907;64908;64909;64910;64911;64912;64913;64914;64915;64916;64917;64918;64919;64920;64921;64922;64923 78476;78477;78478;78479;78480;78481;78482;78483;78484;78485;78486;78487;78488;78489;78490;78491;78492;78493;78494;78495;78496;78497;78498;78499;78500;78501;78502;78503;78504;78505;78506;78507;78508;78509;78510;78511;78512;78513;78514;78515;78516;78517;78518;78519;78520;78521;78522;78523;78524;78525;78526;78527;78528;78529;78530;78531;78532;78533;78534;78535;78536;78537;78538;78539;78540;78541;78542;78543;78544;78545;78546;78547;78548;78549;78550;78551;78552;78553;78554;78555;78556;78557;78558;78559;78560;78561;78562;78563;78564;78565;78566;78567;78568;78569;78570 78529 95 LLQDFFNGKELNK Unmodified 1564.8249 0.82494275 615;701 P11142;P11142-2;P54652;P17066 HSPA8;HSPA2;HSPA6 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 6 no no 0 0 0 1 By MS/MS By MS/MS 4 3.29 2 1 2 2 3 75.662 75.618 3 1.2184E-14 24705 20211116_3440_TMUAki_TMT10x_S_F2 166.9 123.52 31037000 61025000 976050 37107000 48799000 92569000 52730000 93892000 91665000 88687000 66749000 28906000 56854000 3731600 40374000 46949000 90912000 54486000 95240000 90666000 86830000 65162000 7 7 7 7 7 7 7 7 7 7 7 13834000 25379000 345030 14712000 21197000 51870000 26651000 41751000 40554000 39276000 28565000 12883000 23641000 1571600 16318000 20483000 50322000 27179000 42886000 40223000 38461000 27926000 3 3 3 3 3 3 3 3 3 3 3 17203000 35646000 631020 22395000 27602000 40699000 26078000 52141000 51111000 49410000 38184000 16023000 33212000 2160000 24057000 26466000 40589000 27307000 52354000 50443000 48369000 37235000 4 4 4 4 4 4 4 4 4 4 4 4001300000 1996100000 2005200000 12129 615;701 11272 64924;64925;64926;64927;64928 78571;78572;78573;78574;78575;78576;78577 78576 7 LLQDFFNGR Unmodified 1108.5665 0.56654322 596 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 0 0 By MS/MS By MS/MS 4.88 2.89 2 1 1 2 2 4 4 75.983 76.002 2 1.8723E-06 26605 20211116_3439_TMUAki_TMT10x_S_F1 194.22 133.54 56604000 87813000 53682 89039000 55642000 89451000 73201000 55045000 62570000 66219000 71372000 52703000 81943000 4518500 90754000 53783000 90329000 73003000 58037000 64432000 64212000 68577000 7 7 2 7 7 7 7 7 7 7 7 30815000 47217000 8676.5 48195000 33166000 54841000 36730000 30542000 33988000 36157000 38333000 28690000 44063000 2387500 49197000 31878000 54913000 36986000 32447000 34851000 35082000 36844000 4 4 1 4 4 4 4 4 4 4 4 25789000 40596000 45006 40845000 22476000 34610000 36470000 24503000 28582000 30061000 33039000 24012000 37881000 2131000 41557000 21905000 35416000 36017000 25590000 29581000 29130000 31733000 3 3 1 3 3 3 3 3 3 3 3 9840400000 5981800000 3858600000 12130 596 11273 64929;64930;64931;64932;64933;64934;64935;64936 78578;78579;78580;78581;78582;78583;78584;78585 78582 8 LLQDFFNGRDLNK Unmodified 1578.8154 0.8154407 596 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 0 1 By MS/MS By MS/MS 4.5 3.2 2 1 1 2 3 3 73.498 73.518 3 5.172E-09 25576 20211116_3439_TMUAki_TMT10x_S_F1 123.29 96.664 44470000 74642000 363920 73679000 55011000 67264000 57550000 59425000 56044000 56720000 61420000 41408000 69646000 4132300 75137000 52830000 68744000 58197000 60734000 57272000 55507000 59083000 7 7 5 7 7 7 7 7 7 7 7 18325000 30418000 226310 29797000 19882000 34403000 22392000 22269000 20910000 21321000 23170000 17064000 28381000 1752000 30511000 19140000 34490000 22536000 23226000 21417000 20862000 22281000 3 3 3 3 3 3 3 3 3 3 3 26145000 44225000 137610 43882000 35129000 32862000 35158000 37156000 35134000 35399000 38250000 24344000 41265000 2380400 44626000 33690000 34254000 35660000 37509000 35855000 34645000 36802000 4 4 2 4 4 4 4 4 4 4 4 2753000000 1439500000 1313500000 12131 596 11274 64937;64938;64939;64940;64941;64942 78586;78587;78588;78589;78590;78591;78592;78593;78594 78590 9 LLQDHPWLLSQNLVVKPDQLIK Unmodified 2596.4741 0.47409339 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 77.498 77.428 4 4.1059E-14 27234 20211116_3430_TMUAki_TMT10x_P_F3 130.09 118.46 35230000 54902000 501450 56076000 38870000 47194000 44344000 27175000 24968000 29336000 39929000 32803000 51234000 2990600 56991000 37410000 48176000 44094000 28704000 26779000 28562000 38055000 6 6 3 6 6 6 6 6 6 6 6 19702000 30725000 312830 32795000 20687000 32970000 25717000 15846000 13574000 16119000 22405000 18347000 28677000 1893400 33312000 19978000 33192000 25447000 16984000 14654000 15731000 21340000 3 3 2 3 3 3 3 3 3 3 3 15528000 24177000 188610 23281000 18184000 14223000 18627000 11329000 11394000 13217000 17524000 14456000 22557000 1097200 23678000 17432000 14983000 18647000 11721000 12125000 12831000 16715000 3 3 1 3 3 3 3 3 3 3 3 12493000000 6258200000 6234500000 12132 1200 11275 64943;64944;64945;64946 78595;78596;78597;78598;78599;78600 78596 6 LLQDSVDFSLADAINTEFK Unmodified 2125.0579 0.057915395 561 P08670 VIM Vimentin yes yes 0 0 0 0 By MS/MS 4 0 1 1 81.327 81.335 3 1.2318E-10 27228 20211116_3431_TMUAki_TMT10x_P_F4 114.3 104.51 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12133 561 11276 64947 78601 78601 1 LLQLVEDR Unmodified 984.5604 0.56039521 710 P17844;P17844-2 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 0 By MS/MS By MS/MS 3.22 1.31 1 2 2 2 2 5 4 63.729 63.592 2 2.8523E-06 19909 20211116_3431_TMUAki_TMT10x_P_F4 214.64 109.22 64136000 99895000 190740 110770000 80102000 84008000 63654000 66761000 65081000 61098000 78923000 59716000 93254000 5490700 111830000 76388000 86844000 65472000 68579000 66638000 59905000 75706000 11 11 7 11 11 11 11 11 11 11 11 28952000 42830000 64719 48987000 46725000 54732000 32067000 29927000 29287000 27476000 34927000 26957000 39988000 2691300 49626000 44436000 54845000 33207000 31606000 30116000 26936000 33518000 5 5 4 5 5 5 5 5 5 5 5 35184000 57066000 126020 61778000 33377000 29276000 31587000 36835000 35794000 33621000 43996000 32759000 53266000 2799400 62205000 31952000 31999000 32264000 36973000 36521000 32969000 42187000 6 6 3 6 6 6 6 6 6 6 6 9035300000 4678200000 4357100000 12134 710 11277 64948;64949;64950;64951;64952;64953;64954;64955;64956 78602;78603;78604;78605;78606;78607;78608;78609;78610;78611;78612;78613 78606 12 LLQPDFQPVCASQLYPR Unmodified 2031.0248 0.024781548 3144 Q9UJW0;Q9UJW0-2;Q9UJW0-3 DCTN4 Dynactin subunit 4 yes no 0 0 0 0 By MS/MS 1 0 1 1 75.344 75.268 3 1.5684E-06 26297 20211116_3439_TMUAki_TMT10x_S_F1 89.484 72.991 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12135 3144 11278 64957 78614 78614 1 LLQPLVPR Unmodified 934.59639 0.59638679 2208 Q8N8A6 DDX51 ATP-dependent RNA helicase DDX51 yes yes 0 0 0 0 By MS/MS 3 0 1 1 57.148 56.746 2 0.020159 19917 20211116_3441_TMUAki_TMT10x_S_F3 72.138 39.668 2443500 3989100 20155 3761500 2251600 2269000 2258400 3024600 2570100 2853000 3220200 2275300 3721400 218680 3831100 2160300 2420600 2300100 3031900 2624100 2793400 3086300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2443500 3989100 20155 3761500 2251600 2269000 2258400 3024600 2570100 2853000 3220200 2275300 3721400 218680 3831100 2160300 2420600 2300100 3031900 2624100 2793400 3086300 1 1 1 1 1 1 1 1 1 1 1 127960000 0 127960000 12136 2208 11279 64958 78615 78615 1 LLQPPAPIMPLDTNWPLLTVSK Oxidation (M) 2459.3498 0.34980408 1207 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 1 0 By MS/MS By MS/MS 3.6 0.49 2 3 3 2 81.132 81.112 3;4 6.837E-08 29706 20211116_3441_TMUAki_TMT10x_S_F3 97.457 81.151 9486700 15857000 69368 15132000 10126000 17146000 11816000 7016600 6564200 8804800 11389000 8832700 14794000 677810 15518000 9749300 17115000 11734000 7698800 7078900 8525500 10837000 6 6 4 6 6 6 6 6 6 6 6 8376100 13933000 60801 13299000 8585300 15842000 10227000 6053300 5789600 7700200 9913900 7798600 12999000 571730 13650000 8270100 15762000 10150000 6697800 6230400 7452600 9435900 5 5 3 5 5 5 5 5 5 5 5 1110600 1923600 8566.4 1832800 1540900 1304200 1589300 963360 774620 1104600 1475100 1034100 1794600 106090 1868300 1479200 1353600 1584300 1000900 848550 1073000 1401300 1 1 1 1 1 1 1 1 1 1 1 3147100000 2139200000 1007900000 12137 1207 11280 64959;64960;64961;64962;64963 78616;78617;78618;78619;78620;78621 78621 1621 6 LLQPPAPIMPLDTNWPLLTVSK Unmodified 2443.3549 0.35488946 1207 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 By MS/MS By MS/MS 4.25 0.661 1 4 3 4 4 82.135 82.129 3;4 8.6894E-15 27550 20211116_3431_TMUAki_TMT10x_P_F4 137.09 123.18 11730000 19058000 21014 20321000 14720000 12460000 14971000 4845100 4185800 5894200 12343000 10921000 17788000 900320 20524000 14113000 13007000 14839000 5341900 5019700 5713400 11654000 7 7 1 7 7 7 7 7 7 7 7 6443100 9637200 0 10649000 6975600 7912600 7892600 2481900 1989100 2852800 6009900 5998500 8996300 462640 10751000 6706400 8107600 7775100 2808600 2424600 2770900 5673100 3 3 0 3 3 3 3 3 3 3 3 5287100 9421300 21014 9672100 7744000 4547000 7078900 2363200 2196600 3041400 6332600 4922500 8792000 437680 9772800 7406300 4899200 7064100 2533300 2595100 2942500 5980800 4 4 1 4 4 4 4 4 4 4 4 1723700000 746280000 977470000 12138 1207 11280 64964;64965;64966;64967;64968;64969;64970;64971 78622;78623;78624;78625;78626;78627;78628;78629 78623 8 LLQQEEEIK Unmodified 1128.6027 0.60265396 1218 P54136 RARS Arginine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 By MS/MS 3 0 1 1 50.028 49.954 2 2.6482E-05 16001 20211116_3430_TMUAki_TMT10x_P_F3 137.05 72.205 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12139 1218 11281 64972 78630 78630 1 LLQQLFLK Unmodified 1001.6274 0.62735256 3060 Q9P287;Q9P287-2;Q9P287-4;Q9P287-3 BCCIP BRCA2 and CDKN1A-interacting protein yes no 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 78.564 78.548 2 0.00047926 25229 20211116_3444_TMUAki_TMT10x_S_F5 160.91 103.81 26543000 45601000 290920 42353000 33380000 43221000 31943000 31038000 30464000 30033000 35066000 24716000 42539000 2498300 43450000 31983000 43703000 32430000 32142000 31219000 29373000 33684000 4 4 3 4 4 4 4 4 4 4 4 13040000 22237000 96167 19592000 15286000 27703000 16482000 15127000 14573000 14633000 16502000 12142000 20739000 1202200 20295000 14693000 27439000 16597000 16000000 14977000 14312000 15859000 2 2 2 2 2 2 2 2 2 2 2 13503000 23364000 194760 22761000 18094000 15517000 15461000 15911000 15891000 15400000 18564000 12573000 21799000 1296100 23154000 17290000 16264000 15834000 16142000 16242000 15061000 17825000 2 2 1 2 2 2 2 2 2 2 2 2746300000 1493400000 1252900000 12140 3060 11282 64973;64974;64975;64976;64977 78631;78632;78633;78634 78634 4 LLQQVSQIYQSIEFSR Unmodified 1938.0211 0.021076378 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 By MS/MS 3 0 1 1 80.623 80.586 3 1.3973E-07 29478 20211116_3441_TMUAki_TMT10x_S_F3 111.03 99.34 964770 1483600 0 1489900 974680 891750 1107600 749310 841910 751740 1050900 898160 1384300 63250 1510600 936810 942160 1108300 769110 875540 734090 1007300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 964770 1483600 0 1489900 974680 891750 1107600 749310 841910 751740 1050900 898160 1384300 63250 1510600 936810 942160 1108300 769110 875540 734090 1007300 1 1 0 1 1 1 1 1 1 1 1 1153700000 0 1153700000 12141 1684 11283 64978 78635 78635 1 LLQSPCPFCDSPVF Unmodified 1665.7531 0.75309972 3159 Q9UKN8 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 0 0 0 0 By MS/MS By MS/MS 6.2 0.748 1 2 2 2 3 80.721 80.731 2 4.6184E-09 28132 20211116_3435_TMUAki_TMT10x_P_F7 130.94 115.97 7392700 13466000 28903 12361000 9113600 10746000 9883700 6911800 6226400 7497100 9686400 6882700 12562000 561390 12664000 8753000 10961000 9872000 7238500 6617100 7297900 9237000 5 5 2 5 5 5 5 5 5 5 5 3106200 5513500 0 4601000 3243100 6122400 3886700 3007800 2677700 3229700 3989600 2891800 5141300 208460 4780900 3122500 6073200 3871400 3222000 2823500 3145100 3808000 2 2 0 2 2 2 2 2 2 2 2 4286500 7953000 28903 7760000 5870500 4623900 5997000 3904000 3548800 4267400 5696800 3990900 7420200 352920 7883200 5630500 4887800 6000600 4016500 3793600 4152800 5429000 3 3 2 3 3 3 3 3 3 3 3 2901200000 1303300000 1597900000 12142 3159 11284 64979;64980;64981;64982;64983 78636;78637;78638;78639;78640 78637 5 LLQTDDEEEAGLLELLK Unmodified 1927.999 0.99900353 1234 P55060;P55060-3 CSE1L Exportin-2 yes no 0 0 0 0 By MS/MS By MS/MS 2.21 1.21 7 15 2 2 1 1 13 15 58.039 57.983 2;3 8.6298E-109 26685 20211116_3428_TMUAki_TMT10x_P_F1 372.66 300.01 128650000 204970000 1206200 199360000 124110000 168150000 143130000 104400000 91766000 113710000 147050000 119790000 191240000 10608000 203310000 119480000 171470000 142600000 109650000 97566000 110670000 140150000 36 36 19 36 36 35 36 36 36 36 36 74515000 116050000 879740 110420000 62158000 114410000 77459000 59249000 52268000 65624000 83482000 69381000 108270000 6114700 113110000 59992000 115070000 76991000 63215000 55384000 63829000 79566000 14 14 8 14 14 14 14 14 14 14 14 54140000 88918000 326430 88935000 61956000 53745000 65670000 45156000 39498000 48086000 63573000 50409000 82970000 4493300 90201000 59493000 56405000 65608000 46433000 42182000 46843000 60581000 22 22 11 22 22 21 22 22 22 22 22 36332000000 21739000000 14593000000 12143 1234 11285 64984;64985;64986;64987;64988;64989;64990;64991;64992;64993;64994;64995;64996;64997;64998;64999;65000;65001;65002;65003;65004;65005;65006;65007;65008;65009;65010;65011 78641;78642;78643;78644;78645;78646;78647;78648;78649;78650;78651;78652;78653;78654;78655;78656;78657;78658;78659;78660;78661;78662;78663;78664;78665;78666;78667;78668;78669;78670;78671;78672;78673;78674;78675;78676;78677;78678;78679 78642 39 LLSAGATR Unmodified 787.4552 0.45520186 1279 P60891;P60891-2;P21108 PRPS1;PRPS1L1 Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 3 yes no 0 0 0 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 32.302 32.592 2 0.00014621 7129 20211116_3436_TMUAki_TMT10x_P_F8 193.86 79.972 1288800 2273500 8581.1 2165200 2254500 2351200 1716300 1184600 1415100 1143200 1721600 1200000 2121000 118780 2219300 2148100 2357500 1759700 1262100 1463700 1118300 1651300 8 8 5 8 8 8 8 8 8 8 8 888070 1576800 8399.4 1515200 1798700 1992800 1256700 821700 968630 788860 1173200 826920 1471100 91411 1557300 1711400 1974300 1294200 893560 1005300 771800 1125400 5 5 4 5 5 5 5 5 5 5 5 400710 696670 181.71 649990 455730 358400 459560 362950 446520 354380 548440 373050 649890 27373 662040 436650 383200 465550 368530 458440 346460 525900 3 3 1 3 3 3 3 3 3 3 3 48796000 32531000 16265000 12144 1279 11286 65012;65013;65014;65015 78680;78681;78682;78683;78684;78685;78686;78687 78684 8 LLSALCPEEPPVHSSAQIVSK Unmodified 2261.1726 0.172568 2923 Q9NR50;Q9NR50-3;Q9NR50-2 EIF2B3 Translation initiation factor eIF-2B subunit gamma yes no 0 0 0 0 By MS/MS 8 0 1 1 62.221 62.409 3 0.0015796 19143 20211116_3436_TMUAki_TMT10x_P_F8 62.663 40.01 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12145 2923 11287 65016 78688 78688 1 LLSEEVFDFSSGQITQVK Unmodified 2026.0259 0.025886985 153 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.47 1.45 2 2 3 4 3 1 8 7 79.204 79.204 3 3.0937E-31 26611 20211116_3433_TMUAki_TMT10x_P_F5 183.31 164.31 62833000 111410000 1104000 82828000 74877000 94906000 84861000 71745000 72845000 76631000 82813000 58511000 103850000 5444100 86698000 72104000 95419000 85184000 74260000 74986000 74640000 79578000 10 10 8 10 10 10 10 10 10 10 10 24278000 43735000 259330 33933000 25845000 51429000 31837000 29194000 28588000 31643000 33000000 22607000 40773000 1456300 35571000 24948000 50813000 31880000 30878000 29382000 30804000 31697000 3 3 2 3 3 3 3 3 3 3 3 38555000 67675000 844620 48896000 49032000 43478000 53024000 42551000 44257000 44987000 49813000 35904000 63078000 3987900 51127000 47156000 44606000 53304000 43383000 45605000 43836000 47881000 7 7 6 7 7 7 7 7 7 7 7 16808000000 6588100000 10220000000 12146 153 11288 65017;65018;65019;65020;65021;65022;65023;65024;65025;65026;65027;65028;65029;65030;65031 78689;78690;78691;78692;78693;78694;78695;78696;78697;78698;78699;78700;78701;78702;78703;78704;78705 78693 17 LLSISGK Unmodified 716.44324 0.44324019 524 P06748;P06748-3;P06748-2 NPM1 Nucleophosmin yes no 0 0 0 0 By MS/MS By MS/MS 4.67 2.91 2 2 1 2 2 5 4 52.485 52.546 2 0.0012783 14980 20211116_3428_TMUAki_TMT10x_P_F1 143.23 0 82385000 123020000 955540 158070000 68778000 118130000 66680000 66331000 76474000 71505000 94022000 76714000 114920000 6548600 158190000 65934000 121650000 67881000 70210000 77993000 69623000 90156000 8 8 4 8 7 8 7 8 8 8 8 45013000 63863000 261160 95150000 40170000 89957000 28741000 33638000 38540000 38447000 48740000 41911000 59708000 2934300 94781000 38226000 90697000 29886000 37187000 39141000 37351000 46702000 4 4 1 4 3 4 3 4 4 4 4 37372000 59159000 694390 62924000 28609000 28176000 37939000 32692000 37934000 33058000 45282000 34802000 55216000 3614200 63407000 27708000 30948000 37995000 33022000 38852000 32271000 43454000 4 4 3 4 4 4 4 4 4 4 4 11502000000 6219000000 5282600000 12147 524 11289 65032;65033;65034;65035;65036;65037;65038;65039;65040 78706;78707;78708;78709;78710;78711;78712;78713;78714 78706 9 LLSISGKR Unmodified 872.54435 0.54435122 524 P06748;P06748-3;P06748-2 NPM1 Nucleophosmin yes no 0 0 0 1 By MS/MS By MS/MS 3.56 1.07 2 2 3 2 5 4 40.162 40.121 3 0.00066544 10508 20211116_3431_TMUAki_TMT10x_P_F4 139.97 86.138 4168900 7605600 26262 6065600 6861200 6846200 4310200 18351000 5467000 11063000 5850100 3881800 7091100 393280 6308300 6515400 7184900 4541200 17859000 5524700 11105000 5631500 5 5 2 5 5 5 5 5 5 5 5 583600 1032800 0 868020 1172200 1832000 868370 1533400 1178000 1060700 961230 543290 963120 45034 911580 1115600 1800100 906300 1560000 1177200 1055400 933980 2 2 0 2 2 2 2 2 2 2 2 3585300 6572800 26262 5197600 5689000 5014200 3441800 16818000 4289000 10002000 4888900 3338500 6127900 348250 5396800 5399800 5384700 3634900 16299000 4347500 10049000 4697500 3 3 2 3 3 3 3 3 3 3 3 912660000 98261000 814400000 12148 524 11290 65041;65042;65043;65044;65045;65046;65047;65048;65049 78715;78716;78717;78718;78719;78720;78721;78722;78723 78717 9 LLSKEPSPPIDEVINTPR Unmodified 2004.0892 0.089155943 282 O60684 KPNA6 Importin subunit alpha-7 yes yes 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 61.021 61.027 3 3.2623E-31 18382 20211116_3445_TMUAki_TMT10x_S_F6 187.47 155.08 10217000 17849000 102640 16003000 11677000 10428000 9773600 14819000 13921000 13858000 14978000 9513600 16648000 963150 16373000 11155000 11066000 10142000 14817000 14018000 13574000 14416000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10217000 17849000 102640 16003000 11677000 10428000 9773600 14819000 13921000 13858000 14978000 9513600 16648000 963150 16373000 11155000 11066000 10142000 14817000 14018000 13574000 14416000 3 3 3 3 3 3 3 3 3 3 3 617160000 0 617160000 12149 282 11291 65050;65051 78724;78725;78726;78727 78727 4 LLSLGAQANFFHPEK Unmodified 1670.878 0.87804096 3255 Q9Y2X7;Q9Y2X7-3;Q14161;Q14161-10;Q14161-2;Q14161-11;Q14161-7;Q14161-9;Q14161-6;Q14161-8;Q14161-4;Q14161-5;Q14161-3 GIT1;GIT2 ARF GTPase-activating protein GIT1;ARF GTPase-activating protein GIT2 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 69.173 68.873 3 2.2717E-14 22000 20211116_3440_TMUAki_TMT10x_S_F2 127.75 110.39 4122300 6478300 50084 6285000 5426100 8677700 5376200 4974900 3920400 4239100 5429700 3838600 6044300 406700 6461200 5204600 8609500 5410900 5223000 4105600 4170400 5191100 1 1 1 1 1 1 1 1 1 1 1 4122300 6478300 50084 6285000 5426100 8677700 5376200 4974900 3920400 4239100 5429700 3838600 6044300 406700 6461200 5204600 8609500 5410900 5223000 4105600 4170400 5191100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 789610000 789610000 0 12150 3255 11292 65052;65053 78728;78729 78729 2 LLSNTVMPR Oxidation (M) 1045.559 0.559015 922 P35221;P35221-2;P35221-3 CTNNA1 Catenin alpha-1 yes no 0 0 1 0 By MS/MS 4 3 1 1 2 39.363 39.624 2 0.088226 11462 20211116_3446_TMUAki_TMT10x_S_F7 53.493 34.763 627730 1075500 3968.5 1166300 581040 527160 590130 833900 793150 697350 901950 584510 1003900 55088 1173800 557600 583350 604410 828290 801870 686690 866710 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 627730 1075500 3968.5 1166300 581040 527160 590130 833900 793150 697350 901950 584510 1003900 55088 1173800 557600 583350 604410 828290 801870 686690 866710 2 2 2 2 2 2 2 2 2 2 2 18960000 0 18960000 12151 922 11293 65054;65055 78730;78731 78731 1162 2 LLSPFMPFVTEELFQR Oxidation (M) 1969.0019 0.0019208405 820 P26640 VARS Valine--tRNA ligase yes yes 0 0 1 0 By MS/MS By MS/MS 4.4 2.94 3 2 3 2 81.192 81.186 2;3 1.4475E-07 26892 20211116_3436_TMUAki_TMT10x_P_F8 110.55 103.26 6001400 10147000 0 9004600 6154500 9435600 7088700 5171100 5287900 6318200 6925900 5587300 9463900 428720 9273300 5920100 9490000 7085800 5507200 5516500 6123400 6630500 5 5 0 5 5 5 5 5 5 5 5 3636800 6188400 0 5469800 3417700 6510100 3901100 3057000 3270200 3951400 4071900 3385900 5771800 255950 5646400 3286500 6490300 3912300 3309200 3382900 3822300 3903200 3 3 0 3 3 3 3 3 3 3 3 2364600 3958500 0 3534800 2736800 2925500 3187600 2114100 2017700 2366800 2854000 2201400 3692100 172770 3626900 2633600 2999700 3173500 2198000 2133600 2301100 2727300 2 2 0 2 2 2 2 2 2 2 2 2422500000 1584500000 837920000 12152 820 11294 65056;65057;65058;65059;65060 78732;78733;78734;78735;78736 78734 986 5 LLSPGAR Unmodified 712.42317 0.42317345 761 P21964;P21964-2 COMT Catechol O-methyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 32.456 32.746 2 0.044957 7242 20211116_3436_TMUAki_TMT10x_P_F8 71.852 31.167 1380800 2197800 42134 2283100 2251100 2530200 1829300 1349500 1547400 1408000 1805700 1286000 2051100 165940 2326800 2150400 2535800 1868900 1433400 1595800 1372700 1733900 7 7 7 7 7 7 7 7 7 7 7 1030800 1594900 40225 1726200 1819500 2176300 1398300 1072200 1238600 1103200 1384600 960110 1488700 134000 1758400 1736500 2164500 1435400 1146800 1272200 1076100 1331100 6 6 6 6 6 6 6 6 6 6 6 350010 602900 1909.5 556950 431560 353910 431010 277350 308880 304780 421060 325910 562400 31940 568390 413900 371350 433440 286680 323560 296530 402710 1 1 1 1 1 1 1 1 1 1 1 34551000 21506000 13045000 12153 761 11295 65061;65062;65063;65064 78737;78738;78739;78740 78739 4 LLSPTER Unmodified 814.45487 0.45486751 3013 Q9NY33;Q9NY33-4;Q9NY33-2 DPP3 Dipeptidyl peptidase 3 yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 35.521 35.618 2 0.0012651 8557 20211116_3442_TMUAki_TMT10x_S_F4 139.54 72.509 2554700 3929800 25579 4118100 3596100 3374600 2675500 2635100 2901600 2323300 3205200 2378800 3667600 240980 4176700 3425900 3467000 2769000 2707200 2952700 2281900 3082600 4 4 2 4 4 4 4 4 4 4 4 1314700 1912300 18203 2041600 2311400 2359000 1385000 1299900 1438600 1093000 1600400 1224200 1784800 139920 2078400 2194100 2359800 1454900 1368900 1466900 1076000 1538900 1 1 1 1 1 1 1 1 1 1 1 1240000 2017600 7376.4 2076500 1284700 1015500 1290500 1335200 1462900 1230300 1604800 1154600 1882800 101060 2098300 1231800 1107200 1314000 1338300 1485800 1205900 1543700 3 3 1 3 3 3 3 3 3 3 3 96542000 50299000 46243000 12154 3013 11296 65065;65066;65067 78741;78742;78743 78743 3 LLSQGVIAFR Unmodified 1102.6499 0.64987892 1618 Q13309;Q13309-2 SKP2 S-phase kinase-associated protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 65.504 65.199 2 6.5846E-05 23351 20211116_3441_TMUAki_TMT10x_S_F3 129.63 80.869 16885000 29566000 132520 28788000 20938000 20760000 16695000 19108000 16982000 17455000 20729000 15722000 27586000 1580100 29303000 19977000 21607000 17165000 19461000 17397000 17116000 19881000 3 3 3 3 3 3 3 3 3 3 3 4759700 7160000 20209 7829500 4973600 7678600 4746300 4099000 3990700 4015300 5466700 4431900 6683500 416450 7937800 4764400 7751300 4802900 4345700 4145300 3925000 5227800 1 1 1 1 1 1 1 1 1 1 1 12125000 22406000 112310 20958000 15964000 13082000 11949000 15009000 12992000 13440000 15263000 11290000 20902000 1163700 21366000 15213000 13856000 12363000 15116000 13252000 13191000 14653000 2 2 2 2 2 2 2 2 2 2 2 1155500000 251860000 903640000 12155 1618 11297 65068;65069;65070;65071 78744;78745;78746;78747 78746 4 LLSRPQDALEGVVLSPSLEAR Unmodified 2249.2379 0.23794545 2973 Q9NVI7;Q9NVI7-2;Q9NVI7-3 ATAD3A ATPase family AAA domain-containing protein 3A yes no 0 0 0 1 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 71.764 71.816 3 2.9031E-55 24794 20211116_3446_TMUAki_TMT10x_S_F7 226.23 215.59 25005000 43898000 174890 38824000 29200000 36909000 30402000 28341000 26673000 27585000 31882000 23283000 40942000 2230400 39936000 28035000 37526000 30660000 29225000 27483000 26972000 30594000 9 9 5 9 9 9 9 9 9 9 9 11304000 18487000 45742 17518000 11072000 20694000 13207000 12543000 11239000 11947000 13911000 10526000 17247000 945980 17988000 10671000 20702000 13223000 13147000 11615000 11693000 13337000 4 4 2 4 4 4 4 4 4 4 4 13700000 25410000 129150 21305000 18128000 16216000 17196000 15797000 15434000 15638000 17970000 12757000 23695000 1284400 21949000 17364000 16824000 17436000 16078000 15868000 15279000 17257000 5 5 3 5 5 5 5 5 5 5 5 7998300000 4392000000 3606200000 12156 2973 11298 65072;65073;65074;65075;65076;65077 78748;78749;78750;78751;78752;78753;78754;78755;78756 78753 9 LLSSDRNPPIDDLIK Unmodified 1694.9203 0.9202997 106;98 O00629;O00505 KPNA4;KPNA3 Importin subunit alpha-3;Importin subunit alpha-4 no no 0 0 0 1 By MS/MS By MS/MS 5.33 0.745 1 2 3 4 2 63.258 63.323 3 8.959E-11 18980 20211116_3444_TMUAki_TMT10x_S_F5 140.22 102.6 35313000 59516000 490420 66441000 39959000 44105000 35645000 40883000 39451000 41754000 45507000 32883000 55561000 3368700 66958000 38231000 46236000 36500000 41756000 40183000 40743000 43711000 7 7 5 7 7 7 7 7 7 7 7 10952000 17494000 366710 19502000 14128000 21163000 12947000 12490000 11928000 12141000 13005000 10200000 16332000 1294200 19779000 13539000 21262000 13163000 13126000 12217000 11872000 12512000 2 2 2 2 2 2 2 2 2 2 2 24362000 42022000 123710 46939000 25832000 22941000 22698000 28393000 27524000 29613000 32502000 22683000 39229000 2074500 47179000 24692000 24974000 23337000 28630000 27966000 28871000 31199000 5 5 3 5 5 5 5 5 5 5 5 1341100000 727010000 614090000 12157 106;98 11299 65078;65079;65080;65081;65082;65083 78757;78758;78759;78760;78761;78762;78763;78764;78765;78766 78762 10 LLSSFDFFLTDAR Unmodified 1530.7718 0.77184455 377 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.38 3.16 3 1 2 2 4 4 81.596 81.597 2 2.3033E-11 26460 20211116_3447_TMUAki_TMT10x_S_F8 147.63 112.87 4366200 7241600 27664 6406600 5131100 5939100 5387200 4529500 4596000 4981500 5680200 4065400 6754000 373930 6587800 4926500 6047600 5426600 4689900 4748700 4846600 5445900 3 3 2 3 3 3 3 3 3 3 3 1111400 1762300 0 1438000 1103100 2213900 1191300 1088700 1139500 1254900 1384600 1034600 1643200 67464 1501500 1058300 2182200 1202100 1168600 1170200 1218700 1328100 1 1 0 1 1 1 1 1 1 1 1 3254900 5479300 27664 4968600 4028100 3725300 4195900 3440800 3456500 3726600 4295600 3030800 5110800 306460 5086300 3868200 3865400 4224400 3521300 3578500 3627900 4117800 2 2 2 2 2 2 2 2 2 2 2 930990000 524380000 406600000 12158 377 11300 65084;65085;65086;65087;65088;65089;65090;65091 78767;78768;78769;78770 78770 4 LLSVNIR Unmodified 813.50724 0.50723743 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 51.432 51.213 2 0.0021374 17656 20211116_3441_TMUAki_TMT10x_S_F3 129.39 0 5515100 8841500 36987 9390700 8880800 9965000 6617800 8772100 8565800 7848400 7283100 5135100 8252100 500290 9549900 8458200 10089000 6891300 8951400 8583500 7703200 7065500 4 4 2 4 4 4 4 4 4 4 4 2743500 4318400 32260 4689800 5907100 7228800 3783300 4341900 4355400 3928800 3737500 2554500 4030900 280100 4796100 5611100 7142800 3966300 4547900 4383900 3854100 3624600 2 2 1 2 2 2 2 2 2 2 2 2771600 4523100 4727 4700900 2973700 2736200 2834500 4430200 4210400 3919600 3545600 2580500 4221200 220200 4753700 2847000 2946700 2925000 4403500 4199600 3849100 3440900 2 2 1 2 2 2 2 2 2 2 2 456750000 239950000 216790000 12159 542 11301 65092;65093;65094;65095 78771;78772;78773;78774 78774 4 LLSVVPVPEGYSVK Unmodified 1485.8443 0.84428121 2754 Q9GZN8;Q9GZN8-2 C20orf27 UPF0687 protein C20orf27 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 4 2 3 3 76.248 76.224 2;3 1.5011E-13 24704 20211116_3428_TMUAki_TMT10x_P_F1 145.91 125.01 16511000 27363000 101600 25674000 17094000 27208000 19860000 15618000 14187000 16464000 19376000 15374000 25526000 1414000 26334000 16463000 27363000 19825000 16490000 14865000 16045000 18531000 5 5 3 5 5 5 5 5 5 5 5 13928000 22841000 101600 21375000 14080000 24414000 16784000 13251000 11958000 13801000 16133000 12969000 21308000 1235400 21955000 13574000 24433000 16734000 14053000 12525000 13456000 15434000 4 4 3 4 4 4 4 4 4 4 4 2583400 4521500 0 4299100 3014100 2794000 3075900 2367100 2228200 2662700 3243200 2405100 4218200 178630 4379000 2888900 2929600 3090600 2437100 2339900 2588400 3097200 1 1 0 1 1 1 1 1 1 1 1 2239000000 1502800000 736170000 12160 2754 11302 65096;65097;65098;65099;65100;65101 78775;78776;78777;78778;78779;78780 78777 6 LLTECPPMMDTEYTK 2 Oxidation (M) 1859.7991 0.79912321 1234 P55060;P55060-3;P55060-4 CSE1L Exportin-2 yes no 0 0 2 0 By MS/MS By MS/MS 4.14 0.833 2 2 3 3 4 53.329 53.341 3 9.4376E-05 14902 20211116_3444_TMUAki_TMT10x_S_F5 83.087 71.817 21822000 35541000 179760 40911000 33056000 35857000 23939000 31176000 34096000 25455000 30251000 20318000 33183000 1931200 41281000 31464000 36735000 25073000 31763000 34106000 25097000 29301000 9 9 4 9 9 9 9 9 9 9 9 11472000 17534000 75518 20256000 23511000 27230000 15819000 14760000 16509000 12892000 15168000 10682000 16371000 1067400 20576000 22347000 27030000 16470000 15580000 16718000 12668000 14674000 4 4 2 4 4 4 4 4 4 4 4 10350000 18007000 104240 20655000 9544800 8626100 8119300 16417000 17587000 12563000 15082000 9636700 16812000 863840 20705000 9117300 9704800 8603400 16183000 17388000 12429000 14627000 5 5 2 5 5 5 5 5 5 5 5 2257200000 1378600000 878510000 12161 1234 11303 65102;65103;65104;65105;65106;65107;65108 78781;78782;78783;78784;78785;78786;78787;78788;78789;78790 78789 1662;1663 10 LLTECPPMMDTEYTK Oxidation (M) 1843.8042 0.80420859 1234 P55060;P55060-3;P55060-4 CSE1L Exportin-2 yes no 0 0 1 0 By MS/MS 5 0 1 1 61.532 61.699 3 0.010004 19413 20211116_3433_TMUAki_TMT10x_P_F5 56.527 45.422 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12162 1234 11303 65109 78791 78791 1662;1663 1 LLTEIHGGAGGPSGR Unmodified 1420.7423 0.74227576 1862 Q16763 UBE2S Ubiquitin-conjugating enzyme E2 S yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.764 4 1 1 3 3 36.299 36.508 3 2.3401E-19 8551 20211116_3434_TMUAki_TMT10x_P_F6 162.7 135.7 1530300 2413300 28251 2634600 2806400 2920000 1926700 1604300 1646000 1590600 2004800 1425000 2252700 168510 2676400 2670400 2927500 1991600 1697100 1699600 1554000 1922800 8 8 6 8 8 8 8 8 8 8 8 1386700 2199100 27621 2363500 2675700 2796200 1781700 1461100 1510100 1451800 1819300 1291400 2052600 158770 2406000 2544800 2791900 1845600 1552600 1559100 1418300 1745400 5 5 5 5 5 5 5 5 5 5 5 143520 214170 630.16 271100 130700 123780 144920 143150 135930 138750 185480 133620 200060 9747.8 270340 125610 135620 145970 144440 140440 135690 177390 3 3 1 3 3 3 3 3 3 3 3 89039000 77052000 11987000 12163 1862 11304 65110;65111;65112;65113;65114;65115 78792;78793;78794;78795;78796;78797;78798;78799;78800 78793 9 LLTETEDWLYEEGEDQAK Unmodified 2167.9797 0.97972465 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 0 By MS/MS By MS/MS 1.4 0.49 3 2 3 2 79.235 79.213 3 4.2377E-18 25966 20211116_3428_TMUAki_TMT10x_P_F1 157.58 142.65 13581000 20524000 0 19935000 12779000 16980000 15979000 7209500 7520600 10112000 13828000 12644000 19149000 894000 20334000 12319000 17261000 15779000 7910200 8244900 9756600 13145000 2 2 0 2 2 2 2 2 2 2 2 9740900 14783000 0 14083000 8143200 12580000 11592000 4130400 4297900 6090300 9188600 9068100 13791000 584170 14394000 7881700 12718000 11352000 4684600 4865100 5867400 8712500 1 1 0 1 1 1 1 1 1 1 1 3840400 5741600 0 5851400 4635600 4400700 4387400 3079100 3222800 4022000 4639900 3575700 5358000 309830 5940000 4437300 4542900 4427200 3225600 3379900 3889200 4432100 1 1 0 1 1 1 1 1 1 1 1 4281800000 2346800000 1935000000 12164 2345 11305 65116;65117;65118;65119;65120 78801;78802;78803;78804;78805 78801 5 LLTHTFNR Unmodified 1000.5454 0.54541385 1560 Q12756;Q12756-3;Q12756-2 KIF1A Kinesin-like protein KIF1A yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 35.127 35.052 3 0.00069596 7819 20211116_3440_TMUAki_TMT10x_S_F2 118.74 87.371 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12165 1560 11306 65121;65122 78806;78807 78807 2 LLTHTFVAQPGLSR Unmodified 1538.8569 0.85691158 3300 Q9Y4K4 MAP4K5 Mitogen-activated protein kinase kinase kinase kinase 5 yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 49.853 49.925 3 1.1704E-06 14754 20211116_3442_TMUAki_TMT10x_S_F4 94.617 71.012 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12166 3300 11307 65123;65124;65125 78808;78809;78810 78810 3 LLTQHENIKNEIDNYEEDYQK Unmodified 2635.2402 0.24018987 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 1.12 1 1 1 1 3 1 59.911 59.893 4 4.1657E-10 18383 20211116_3431_TMUAki_TMT10x_P_F4 110.6 103.16 12155000 20256000 74248 21953000 15974000 23397000 14641000 14552000 13829000 13985000 15919000 11318000 18908000 1111400 22298000 15286000 23547000 14895000 15225000 14178000 13681000 15292000 3 3 2 3 3 3 3 3 3 3 3 8882700 14872000 33896 15935000 12273000 19817000 11356000 10523000 9877400 10103000 11465000 8270800 13881000 796570 16239000 11746000 19740000 11521000 11156000 10170000 9884200 11011000 2 2 1 2 2 2 2 2 2 2 2 3271900 5384900 40351 6018700 3700100 3580100 3284800 4028800 3951600 3881800 4453700 3046800 5027000 314870 6058800 3539800 3807700 3374200 4069100 4008700 3797300 4280800 1 1 1 1 1 1 1 1 1 1 1 3981300000 3148900000 832440000 12167 1475 11308 65126;65127;65128;65129 78811;78812 78811 2 LLTQYILNLGK Unmodified 1274.7598 0.7598233 70 O00203;O00203-3 AP3B1 AP-3 complex subunit beta-1 yes no 0 0 0 0 By MS/MS 6 0 1 1 79.634 79.626 2 1.1599E-11 25948 20211116_3445_TMUAki_TMT10x_S_F6 140.49 105.66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12168 70 11309 65130 78813 78813 1 LLTSFLPAQLLR Unmodified 1370.8286 0.82857157 551 P08195;P08195-3;P08195-2;P08195-4 SLC3A2 4F2 cell-surface antigen heavy chain yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 80.516 80.521 2 1.408E-06 28041 20211116_3435_TMUAki_TMT10x_P_F7 120.76 87.923 34307000 61517000 5934700 74919000 60257000 109320000 61560000 63608000 37666000 39544000 55339000 31988000 57452000 8738700 75997000 58169000 108210000 61635000 66259000 39992000 39612000 52836000 2 2 2 2 2 2 2 2 2 2 2 34307000 61517000 5934700 74919000 60257000 109320000 61560000 63608000 37666000 39544000 55339000 31988000 57452000 8738700 75997000 58169000 108210000 61635000 66259000 39992000 39612000 52836000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1210700000 1210700000 0 12169 551 11310 65131;65132 78814;78815 78815 2 LLTSGYLQR Unmodified 1049.5869 0.58694431 2463 Q96FW1;Q96FW1-2 OTUB1 Ubiquitin thioesterase OTUB1 yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 51.385 51.181 2 1.36E-06 16100 20211116_3429_TMUAki_TMT10x_P_F2 195.81 151.42 6232500 9608600 0 11828000 10404000 11376000 6874200 10293000 10479000 7839900 9616200 5802500 8974100 512000 11903000 9883100 11592000 7269000 10446000 10472000 7758000 9303100 2 2 0 2 2 2 2 2 2 2 2 3389200 4504500 0 6315200 8188200 9101700 4677800 5490300 5533700 4078600 5209100 3155400 4209900 322060 6356300 7761300 9019200 4954900 5722100 5580600 4041600 5035100 1 1 0 1 1 1 1 1 1 1 1 2843300 5104100 0 5512600 2215900 2273900 2196400 4802700 4945300 3761300 4407100 2647100 4764200 189950 5546500 2121800 2573100 2314000 4724200 4891600 3716400 4268000 1 1 0 1 1 1 1 1 1 1 1 412000000 284810000 127200000 12170 2463 11311 65133;65134;65135 78816;78817;78818 78817 3 LLTSYGFIQCSER Unmodified 1572.7606 0.76062794 346 O75534;O75534-2;O75534-3;O75534-4 CSDE1 Cold shock domain-containing protein E1 yes no 0 0 0 0 By MS/MS 8 0 1 1 66.065 66.221 2 1.9559E-22 20711 20211116_3436_TMUAki_TMT10x_P_F8 181.68 152.21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12171 346 11312 65136 78819 78819 1 LLTTIGKDLDFEK Unmodified 1491.8185 0.81846039 1511;216 O43432;O43432-4;O43432-3;Q04637;Q04637-3;Q04637-8;Q04637-5;Q04637-4;Q04637-9;Q04637-6;Q04637-7 EIF4G3;EIF4G1 Eukaryotic translation initiation factor 4 gamma 3;Eukaryotic translation initiation factor 4 gamma 1 no no 0 0 0 1 By MS/MS By matching 7 0 2 1 1 74.333 74.509 3 0.0011162 25492 20211116_3435_TMUAki_TMT10x_P_F7 76.341 54.286 12634000 22179000 68937 15371000 17200000 34246000 19765000 21378000 16394000 20194000 18169000 11764000 20670000 1159000 16444000 16560000 33434000 19810000 22350000 16888000 19772000 17472000 2 2 1 2 2 2 2 2 2 2 2 12634000 22179000 68937 15371000 17200000 34246000 19765000 21378000 16394000 20194000 18169000 11764000 20670000 1159000 16444000 16560000 33434000 19810000 22350000 16888000 19772000 17472000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1717400000 941990000 775380000 12172 216;1511 11313 65137;65138 78820;78821 78820 2 LLTTILHSDGDLTEQGK Unmodified 1839.9578 0.95780742 2945 Q9NTI5;Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 68.861 68.917 3 1.2258E-05 21334 20211116_3444_TMUAki_TMT10x_S_F5 91.657 73.2 9198800 14535000 250290 14093000 9617900 13556000 10541000 10774000 9239400 10169000 11471000 8566900 13561000 1001800 14401000 9260500 13781000 10604000 11077000 9535700 9956500 10997000 2 2 2 2 2 2 2 2 2 2 2 4578500 7285600 207700 7228600 4733500 9235000 5622300 6050000 4784600 5406300 5611900 4264600 6798100 575330 7408400 4573700 9212600 5630600 6292700 4933500 5306600 5388000 1 1 1 1 1 1 1 1 1 1 1 4620300 7249400 42589 6864700 4884400 4321200 4919100 4724200 4454800 4762600 5859100 4302300 6763000 426450 6992200 4686800 4568100 4973500 4784000 4602100 4649800 5608600 1 1 1 1 1 1 1 1 1 1 1 1287900000 732000000 555920000 12173 2945 11314 65139;65140;65141 78822;78823;78824 78824 3 LLTVPFEK Unmodified 945.55352 0.55351892 422 O95336 PGLS 6-phosphogluconolactonase yes yes 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 68.222 68.547 2 0.00094603 21657 20211116_3436_TMUAki_TMT10x_P_F8 131.03 57.057 63294000 105670000 332980 104050000 76099000 108370000 67454000 52534000 44433000 56924000 76913000 58934000 98597000 5582000 106330000 72760000 108870000 68161000 56362000 47363000 55414000 73190000 3 3 1 3 3 3 3 3 3 3 3 43080000 71539000 332980 70930000 54364000 88027000 45288000 36752000 31646000 39485000 51954000 40113000 66751000 3912800 72659000 51910000 87470000 45989000 40036000 33512000 38450000 49490000 2 2 1 2 2 2 2 2 2 2 2 20214000 34133000 0 33118000 21735000 20338000 22167000 15782000 12787000 17439000 24959000 18821000 31846000 1669100 33667000 20850000 21405000 22172000 16326000 13851000 16964000 23700000 1 1 0 1 1 1 1 1 1 1 1 1761200000 1448600000 312680000 12174 422 11315 65142;65143;65144 78825;78826;78827 78826 3 LLVATSVAAR Unmodified 999.60768 0.60767975 2049 Q7L014 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 48.315 47.962 2 7.6269E-05 16307 20211116_3441_TMUAki_TMT10x_S_F3 127.68 102.54 3022200 5105900 0 5030300 2859900 2541200 2278500 4724900 4725200 3720400 4507100 2813600 4764100 201490 5099800 2724500 2791400 2417300 4663700 4692300 3674900 4354600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3022200 5105900 0 5030300 2859900 2541200 2278500 4724900 4725200 3720400 4507100 2813600 4764100 201490 5099800 2724500 2791400 2417300 4663700 4692300 3674900 4354600 1 1 0 1 1 1 1 1 1 1 1 122930000 0 122930000 12175 2049 11316 65145;65146 78828;78829 78829 2 LLVDVDESTLSPEEQK Unmodified 1800.8993 0.89928949 345 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.29 0.881 2 1 4 5 2 56.578 56.559 2;3 1.1684E-14 23774 20211116_3430_TMUAki_TMT10x_P_F3 133.05 103.24 3935300 5985100 11696 6656800 4275800 6862800 4492800 3798600 3587500 3393800 4689000 3664200 5587300 341260 6746700 4106000 6909800 4517900 4004700 3728400 3331300 4489200 5 5 4 5 5 5 5 5 5 5 5 3935300 5985100 11696 6656800 4275800 6862800 4492800 3798600 3587500 3393800 4689000 3664200 5587300 341260 6746700 4106000 6909800 4517900 4004700 3728400 3331300 4489200 5 5 4 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 572300000 572300000 0 12176 345 11317 65147;65148;65149;65150;65151;65152;65153 78830;78831;78832;78833;78834;78835;78836;78837 78835 8 LLVDVDESTLSPEEQKER Unmodified 2086.043 0.042993612 345 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 59.108 58.921 3 1.7181E-70 20766 20211116_3441_TMUAki_TMT10x_S_F3 282.19 253.56 19690000 34628000 67960 28295000 32630000 45879000 30378000 34405000 33928000 33408000 30578000 18333000 32288000 1762000 29576000 31227000 45396000 31041000 35530000 34241000 32669000 29601000 7 7 4 7 7 7 7 7 7 7 7 13809000 23928000 42643 20060000 25813000 37847000 23554000 23313000 23558000 22743000 20994000 12857000 22313000 1284600 21004000 24692000 37132000 24010000 24419000 23875000 22236000 20331000 5 5 3 5 5 5 5 5 5 5 5 5881100 10699000 25317 8235500 6817200 8032300 6824200 11092000 10370000 10665000 9584300 5475700 9974500 477370 8572500 6535300 8264100 7031500 11111000 10366000 10434000 9269900 2 2 1 2 2 2 2 2 2 2 2 2936500000 1817100000 1119400000 12177 345 11318 65154;65155;65156;65157;65158;65159 78838;78839;78840;78841;78842;78843;78844 78844 7 LLVEFAR Unmodified 846.49634 0.49633839 2279 Q8TDD1;Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 yes no 0 0 0 0 By MS/MS 7 0 1 1 59.354 59.87 2 0.034243 19864 20211116_3446_TMUAki_TMT10x_S_F7 77.674 18.757 4231900 7149800 0 7169100 5691300 4600200 4326100 5522000 4769300 4754200 5444300 3939900 6671600 319960 7273900 5419400 4865600 4473200 5544900 4856500 4674800 5231100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4231900 7149800 0 7169100 5691300 4600200 4326100 5522000 4769300 4754200 5444300 3939900 6671600 319960 7273900 5419400 4865600 4473200 5544900 4856500 4674800 5231100 1 1 0 1 1 1 1 1 1 1 1 315800000 0 315800000 12178 2279 11319 65160 78845 78845 1 LLVGNDDVHIIAR Unmodified 1433.7991 0.79906235 2092 Q7Z6Z7;Q7Z6Z7-2;Q7Z6Z7-3 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 1 3 52.51 52.656 3 1.1874E-14 14598 20211116_3444_TMUAki_TMT10x_S_F5 161.87 130.11 8289100 14665000 133080 14278000 10380000 10926000 8526800 13461000 11227000 11236000 12123000 7719000 13682000 840530 14543000 9914300 11394000 8829600 13492000 11336000 11065000 11667000 5 5 5 5 5 5 5 5 5 5 5 1790200 3147400 1877.9 3004800 3180100 5148100 2666400 3404800 2708000 2747300 2660000 1666900 2936400 169640 3107500 3036500 5073100 2732800 3530100 2751400 2710300 2567400 1 1 1 1 1 1 1 1 1 1 1 6498900 11517000 131200 11273000 7199800 5777800 5860400 10056000 8519500 8488400 9463200 6052100 10746000 670890 11436000 6877800 6321200 6096800 9961700 8584300 8354800 9099600 4 4 4 4 4 4 4 4 4 4 4 1085300000 308550000 776700000 12179 2092 11320 65161;65162;65163;65164 78846;78847;78848;78849;78850 78848 5 LLVGSEDYGRDLTGVQNLR Unmodified 2104.0913 0.091281208 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 62.433 62.412 3 5.1226E-32 18945 20211116_3445_TMUAki_TMT10x_S_F6 195.97 167.88 6675300 11955000 96035 12131000 8871700 7115600 7176200 9273600 7579800 8376400 9414600 6216100 11156000 673700 12288000 8469800 7606700 7380300 9293000 7758600 8217800 9025200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6675300 11955000 96035 12131000 8871700 7115600 7176200 9273600 7579800 8376400 9414600 6216100 11156000 673700 12288000 8469800 7606700 7380300 9293000 7758600 8217800 9025200 2 2 2 2 2 2 2 2 2 2 2 479980000 0 479980000 12180 1663 11321 65165;65166 78851;78852;78853 78852 3 LLVGVDEK Unmodified 871.50148 0.50148335 1200 P53396;P53396-2 ACLY ATP-citrate synthase yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 53.58 53.728 2 0.0016421 16172 20211116_3433_TMUAki_TMT10x_P_F5 119.29 60.31 32820000 51963000 244820 56529000 42267000 46501000 34687000 32697000 36566000 34490000 39859000 30560000 48504000 2985000 57196000 40345000 47680000 35639000 33995000 37234000 33611000 38348000 4 4 2 4 4 4 4 4 4 4 4 16914000 26641000 0 28845000 28553000 32879000 19006000 17065000 19766000 18248000 19580000 15747000 24867000 1468800 29332000 27132000 32891000 19802000 18184000 20068000 17773000 18894000 2 2 0 2 2 2 2 2 2 2 2 15906000 25323000 244820 27684000 13714000 13622000 15681000 15632000 16801000 16242000 20279000 14812000 23638000 1516200 27865000 13214000 14790000 15837000 15810000 17166000 15837000 19455000 2 2 2 2 2 2 2 2 2 2 2 1870400000 735190000 1135200000 12181 1200 11322 65167;65168;65169;65170 78854;78855;78856;78857 78855 4 LLVGVDEKLNPEDIKK Unmodified 1809.0248 0.024764773 1200 P53396;P53396-2 ACLY ATP-citrate synthase yes no 0 0 0 2 By matching By MS/MS 6.33 0.471 2 1 1 2 62.802 62.959 4 7.4635E-05 21093 20211116_3446_TMUAki_TMT10x_S_F7 84.829 62.989 12740000 25056000 72389 17641000 23946000 23191000 15731000 47223000 40905000 39823000 28860000 11863000 23352000 1269500 18603000 22758000 23823000 17165000 46579000 40085000 39198000 28213000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12740000 25056000 72389 17641000 23946000 23191000 15731000 47223000 40905000 39823000 28860000 11863000 23352000 1269500 18603000 22758000 23823000 17165000 46579000 40085000 39198000 28213000 2 2 1 2 2 2 2 2 2 2 2 2322100000 689860000 1632200000 12182 1200 11323 65171;65172;65173 78858;78859 78858 2 LLVLEAFQVSHPCR Unmodified 1667.8817 0.88174613 236 O43708;O43708-2;O43708-3 GSTZ1 Maleylacetoacetate isomerase yes no 0 0 0 0 By MS/MS 3 0 1 1 71.067 70.654 3 1.7952E-07 25528 20211116_3441_TMUAki_TMT10x_S_F3 120.53 98.328 1620400 2706700 4136.3 2155300 1903900 1820800 1824600 1873800 1555000 1961200 2026700 1508800 2523500 142170 2232700 1823800 1876700 1846600 1905100 1610500 1911800 1940500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1620400 2706700 4136.3 2155300 1903900 1820800 1824600 1873800 1555000 1961200 2026700 1508800 2523500 142170 2232700 1823800 1876700 1846600 1905100 1610500 1911800 1940500 1 1 1 1 1 1 1 1 1 1 1 292190000 0 292190000 12183 236 11324 65174 78860 78860 1 LLVPAAEGEDSLKK Unmodified 1468.8137 0.81370936 2535 Q96PU8;Q96PU8-9;Q96PU8-8;Q96PU8-6;Q96PU8-3;Q96PU8-5 QKI Protein quaking yes no 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 54.385 54.519 3 3.8527E-05 15376 20211116_3444_TMUAki_TMT10x_S_F5 85.45 63.252 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12184 2535 11325 65175;65176 78861;78862 78862 2 LLVPCALDPPNPNCYVCASKPEVTVR Unmodified 2968.4609 0.46090422 3087 Q9UBT2;Q9UBT2-2 UBA2 SUMO-activating enzyme subunit 2 yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 72.836 72.667 4 3.9134E-30 23523 20211116_3440_TMUAki_TMT10x_S_F2 163.72 156.44 11526000 20368000 53852 18387000 13364000 17666000 14026000 11589000 10043000 11530000 12942000 10732000 18998000 1031500 18887000 12834000 17905000 14069000 12088000 10495000 11264000 12395000 4 4 4 4 4 4 4 4 4 4 4 6484200 10894000 26542 10291000 6405000 11925000 7681300 6291000 5501700 6416900 6954700 6037600 10163000 561210 10566000 6175100 11921000 7657200 6684400 5743900 6261900 6664000 2 2 2 2 2 2 2 2 2 2 2 5041900 9474000 27309 8095400 6958900 5740300 6344400 5298100 4541700 5113500 5986800 4694700 8835100 470310 8320800 6658700 5983200 6411800 5403500 4750600 5001700 5730500 2 2 2 2 2 2 2 2 2 2 2 2701800000 1283400000 1418400000 12185 3087 11326 65177;65178 78863;78864;78865;78866 78866 4 LLVPDIQEIR Unmodified 1194.6972 0.69722304 1560 Q12756;Q12756-3;Q12756-2 KIF1A Kinesin-like protein KIF1A yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 68.609 68.615 2 0.0073101 22275 20211116_3433_TMUAki_TMT10x_P_F5 72.478 53.698 15821000 25702000 457490 27759000 17878000 21128000 16545000 14559000 14358000 16131000 21344000 14734000 23991000 1691700 28074000 17131000 21786000 16785000 15181000 14950000 15690000 20373000 2 2 1 2 2 2 2 2 2 2 2 7347200 10453000 0 11402000 7279300 12023000 7980500 5573900 5217800 5790400 9212700 6840400 9757200 533060 11574000 6992500 12065000 7972800 5999100 5570900 5646300 8763500 1 1 0 1 1 1 1 1 1 1 1 8473700 15249000 457490 16357000 10598000 9105300 8564800 8984900 9139900 10341000 12131000 7893200 14234000 1158700 16501000 10139000 9720500 8811800 9181900 9379300 10044000 11610000 1 1 1 1 1 1 1 1 1 1 1 600040000 328060000 271980000 12186 1560 11327 65179;65180 78867;78868 78867 2 LLVPLVPDLQDVAQLR Unmodified 1788.0509 0.050919944 2652 Q9BSJ8;Q9BSJ8-2 ESYT1 Extended synaptotagmin-1 yes no 0 0 0 0 By MS/MS By MS/MS 7.4 0.8 1 1 3 2 3 81.03 81.036 2;3 3.3735E-21 26217 20211116_3447_TMUAki_TMT10x_S_F8 162.48 144.12 3392500 4940900 0 5972700 3544800 3120100 3812100 2145100 2217600 4035600 3717300 3158400 4614200 146430 5977600 3403200 3332600 3803400 2286800 2379000 3863500 3539500 3 3 0 3 3 3 3 3 3 3 3 1275700 1290800 0 2161500 878000 1125100 1028700 504130 714960 1407200 1241700 1187800 1207700 0 2128100 845660 1196100 1025900 570940 759770 1337100 1181500 1 1 0 1 1 1 1 1 1 1 1 2116800 3650200 0 3811200 2666800 1995000 2783300 1641000 1502600 2628400 2475600 1970600 3406600 146430 3849500 2557600 2136500 2777500 1715900 1619200 2526400 2358000 2 2 0 2 2 2 2 2 2 2 2 2967800000 1348300000 1619400000 12187 2652 11328 65181;65182;65183;65184;65185 78869;78870;78871;78872 78871 4 LLVPPLCIRPSVVSDLK Unmodified 1905.1121 0.11213999 135 O14802 POLR3A DNA-directed RNA polymerase III subunit RPC1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 76.727 76.744 3 0.00023482 24466 20211116_3444_TMUAki_TMT10x_S_F5 76.151 39.866 25816000 42675000 312960 41156000 29565000 31755000 27715000 19426000 15885000 19323000 27392000 24039000 39814000 2457700 41952000 28319000 32652000 27843000 20370000 17086000 18876000 26067000 4 4 3 4 4 4 4 4 4 4 4 13082000 20768000 151060 20584000 13013000 19646000 13271000 9771200 7834500 10071000 13751000 12182000 19378000 1224400 20998000 12493000 19850000 13280000 10442000 8418100 9823400 13082000 2 2 2 2 2 2 2 2 2 2 2 12734000 21906000 161900 20572000 16552000 12109000 14444000 9654600 8050600 9251600 13640000 11857000 20436000 1233300 20955000 15826000 12803000 14563000 9927900 8668200 9052200 12985000 2 2 1 2 2 2 2 2 2 2 2 1070800000 714700000 356060000 12188 135 11329 65186;65187;65188 78873;78874;78875;78876;78877 78876 5 LLVPTQFVGAIIGK Unmodified 1454.8861 0.88608645 86 O00425 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 6 1.15 2 2 2 6 10 2 61.251 61.301 2;3 3.5618E-30 27226 20211116_3433_TMUAki_TMT10x_P_F5 218.54 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12189 86 11330 65189;65190;65191;65192;65193;65194;65195;65196;65197;65198;65199;65200 78878;78879;78880;78881;78882;78883;78884;78885;78886;78887;78888;78889 78879 12 LLVPTQYVGAIIGK Unmodified 1470.881 0.88100107 3032 Q9NZI8 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.48 0.941 1 3 22 10 8 20 24 61.271 61.276 2;3 1.1084E-29 28615 20211116_3433_TMUAki_TMT10x_P_F5 208.72 155.55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12190 3032 11331 65201;65202;65203;65204;65205;65206;65207;65208;65209;65210;65211;65212;65213;65214;65215;65216;65217;65218;65219;65220;65221;65222;65223;65224;65225;65226;65227;65228;65229;65230;65231;65232;65233;65234;65235;65236;65237;65238;65239;65240;65241;65242;65243;65244 78890;78891;78892;78893;78894;78895;78896;78897;78898;78899;78900;78901;78902;78903;78904;78905;78906;78907;78908;78909;78910;78911;78912;78913;78914;78915;78916;78917;78918;78919;78920;78921;78922;78923;78924;78925;78926;78927;78928;78929;78930;78931;78932;78933 78896 44 LLVQHEINTLR Unmodified 1334.767 0.76703394 1122 P49792;Q7Z3J3;Q99666;O14715;Q99666-2 RANBP2;RGPD4;RGPD5;RGPD8 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 no no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 45.512 45.832 3 1.0751E-14 14125 20211116_3446_TMUAki_TMT10x_S_F7 183.99 156.87 15717000 25741000 201000 24499000 40829000 50038000 23986000 46656000 42509000 32603000 29841000 14634000 24014000 1674900 25463000 38726000 49324000 25784000 47186000 41986000 32421000 29178000 9 9 5 9 9 9 9 9 9 9 9 12495000 20158000 188170 18931000 37184000 46325000 20934000 36107000 32813000 25677000 23221000 11634000 18805000 1394700 19809000 35246000 45274000 22451000 36915000 32522000 25507000 22697000 6 6 3 6 6 6 6 6 6 6 6 3221700 5582200 12823 5568900 3645000 3712600 3052300 10548000 9695900 6926600 6619900 2999800 5208700 280210 5654400 3480500 4050200 3332700 10272000 9464000 6914100 6481200 3 3 2 3 3 3 3 3 3 3 3 2304300000 1391000000 913360000 12191 1122 11332 65245;65246;65247;65248 78934;78935;78936;78937;78938;78939;78940;78941;78942 78942 9 LLVSASQDGK Unmodified 1016.5502 0.55022446 1376;1377 P62879;Q9HAV0;P16520;P16520-2;P62873;P62873-2 GNB2;GNB4;GNB3;GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein subunit beta-4;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 no no 0 0 0 0 By MS/MS 6 0 2 2 45.595 45.76 2;3 1.535E-09 12066 20211116_3445_TMUAki_TMT10x_S_F6 162.8 122.6 1575300 2676200 12856 2753500 1488700 1291900 1434300 2180000 2151600 1729100 2244700 1466900 2497500 141370 2781700 1426800 1426200 1479900 2158100 2160800 1707300 2162500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1575300 2676200 12856 2753500 1488700 1291900 1434300 2180000 2151600 1729100 2244700 1466900 2497500 141370 2781700 1426800 1426200 1479900 2158100 2160800 1707300 2162500 1 1 1 1 1 1 1 1 1 1 1 96857000 0 96857000 12192 1377;1376 11333 65249;65250 78943;78944 78944 2 LLVSQGASIYIENKEEK Unmodified 1920.0204 0.020407676 362 O75832 PSMD10 26S proteasome non-ATPase regulatory subunit 10 yes yes 0 0 0 1 By MS/MS By MS/MS 7.33 0.471 4 2 3 3 60.919 61.353 3;4 1.807E-29 20450 20211116_3446_TMUAki_TMT10x_S_F7 191.21 169.38 17229000 29428000 233690 28695000 22610000 26533000 20211000 21489000 22108000 20628000 23156000 16044000 27457000 1720400 29293000 21633000 27050000 20685000 22077000 22445000 20182000 22306000 4 4 3 4 4 4 4 4 4 4 4 8175000 13297000 150170 13332000 10639000 16338000 10080000 8421200 9065700 8580600 10140000 7612800 12407000 851090 13643000 10197000 16281000 10222000 8966400 9305300 8373700 9748300 2 2 1 2 2 2 2 2 2 2 2 9054400 16131000 83526 15364000 11970000 10195000 10131000 13067000 13042000 12048000 13017000 8431200 15049000 869350 15651000 11436000 10769000 10463000 13111000 13140000 11809000 12557000 2 2 2 2 2 2 2 2 2 2 2 4308400000 2577300000 1731100000 12193 362 11334 65251;65252;65253;65254;65255;65256 78945;78946;78947;78948 78947 4 LLVTDMSDAEQYR Oxidation (M) 1555.7188 0.7188227 142 O14929;O14929-2 HAT1 Histone acetyltransferase type B catalytic subunit yes no 0 0 1 0 By MS/MS 3 0 1 1 49.6 49.526 2 0.00017932 15874 20211116_3430_TMUAki_TMT10x_P_F3 97.277 69.648 689660 1240200 6658.9 1364200 1589300 1980100 944330 1046400 1229900 1018100 1014200 642190 1157700 75983 1392200 1508100 1958200 1000400 1110200 1231100 995470 985020 1 1 1 1 1 1 1 1 1 1 1 689660 1240200 6658.9 1364200 1589300 1980100 944330 1046400 1229900 1018100 1014200 642190 1157700 75983 1392200 1508100 1958200 1000400 1110200 1231100 995470 985020 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 81252000 81252000 0 12194 142 11335 65257 78949 78949 100 1 LLVTDMSDAEQYR Unmodified 1539.7239 0.72390808 142 O14929;O14929-2 HAT1 Histone acetyltransferase type B catalytic subunit yes no 0 0 0 0 By MS/MS 3 0 1 1 61.996 61.722 2 4.8844E-09 20897 20211116_3430_TMUAki_TMT10x_P_F3 132.17 106.61 1838200 2994700 0 2908200 2130400 3403500 2514300 1481100 1351800 1569300 2154900 1711500 2794000 152220 2980300 2052100 3393500 2494300 1605500 1454600 1529000 2053900 1 1 0 1 1 1 1 1 1 1 1 1838200 2994700 0 2908200 2130400 3403500 2514300 1481100 1351800 1569300 2154900 1711500 2794000 152220 2980300 2052100 3393500 2494300 1605500 1454600 1529000 2053900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 268260000 268260000 0 12195 142 11335 65258 78950 78950 1 LLVVTDPR Unmodified 911.54402 0.54401687 565 P08865 RPSA 40S ribosomal protein SA yes yes 0 0 0 0 By MS/MS By MS/MS 5.78 1.31 2 2 2 2 1 4 5 49.847 50.103 2 0.0020731 15506 20211116_3435_TMUAki_TMT10x_P_F7 114.02 58.012 45807000 71906000 40632 76036000 84586000 84862000 49169000 66702000 69503000 56788000 62558000 42645000 67111000 3518300 77410000 80162000 85499000 52356000 68437000 69571000 55870000 60562000 9 9 1 9 9 9 9 9 9 9 9 30965000 47526000 0 49865000 70434000 72840000 37323000 43995000 46561000 37673000 41449000 28826000 44355000 2410600 51049000 66657000 72139000 39876000 45998000 46782000 37054000 40142000 5 5 0 5 5 5 5 5 5 5 5 14843000 24380000 40632 26171000 14152000 12022000 11846000 22706000 22942000 19115000 21109000 13819000 22756000 1107700 26361000 13504000 13360000 12480000 22439000 22789000 18817000 20420000 4 4 1 4 4 4 4 4 4 4 4 13600000000 6800700000 6799800000 12196 565 11336 65259;65260;65261;65262;65263;65264;65265;65266;65267 78951;78952;78953;78954;78955;78956;78957;78958;78959;78960 78955 10 LLVVYPWTQR Unmodified 1273.7183 0.71829284 53 CON__Q3SX09;P68871;P02042;CON__P02070;P69892;P69891;P02100 HBB;HBD;HBG2;HBG1;HBE1 Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin;Hemoglobin subunit delta;Hemoglobin subunit gamma-2;Hemoglobin subunit gamma-1;Hemoglobin subunit epsilon yes no 0 0 0 0 By MS/MS By MS/MS 4.5 1.12 2 2 2 2 4 4 75.297 75.241 2 5.4866E-14 24116 20211116_3445_TMUAki_TMT10x_S_F6 225.24 182.84 + 24645000 43813000 253160 37191000 39922000 45048000 43762000 39435000 35855000 46123000 39514000 22948000 40857000 2413400 38526000 38385000 45282000 43944000 40578000 36952000 44770000 38005000 9 9 6 9 9 9 9 9 9 9 9 11247000 19363000 83212 16809000 17765000 27028000 22719000 17814000 15991000 20517000 17641000 10472000 18058000 1073000 17482000 17162000 26697000 22578000 18658000 16621000 19927000 16966000 4 4 2 4 4 4 4 4 4 4 4 13398000 24450000 169950 20381000 22156000 18021000 21043000 21621000 19864000 25606000 21874000 12476000 22800000 1340400 21044000 21223000 18585000 21366000 21920000 20331000 24844000 21038000 5 5 4 5 5 5 5 5 5 5 5 5315000000 2907000000 2408000000 12197 53 11337 65268;65269;65270;65271;65272;65273;65274;65275 78961;78962;78963;78964;78965;78966;78967;78968;78969 78969 9 LLYAVGGFDGTNR Unmodified 1381.699 0.69901396 1682 Q14145 KEAP1 Kelch-like ECH-associated protein 1 yes yes 0 0 0 0 By MS/MS 8 0 1 1 65.811 65.967 2 0.045603 20608 20211116_3436_TMUAki_TMT10x_P_F8 57.267 30.013 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12198 1682 11338 65276 78970 78970 1 LLYCHPPPGRDPVTFQHQHQR Unmodified 2582.2713 0.27132803 2767 Q9H089 LSG1 Large subunit GTPase 1 homolog yes yes 0 0 0 1 By MS/MS 1.67 0.471 1 2 3 33.834 33.686 5;6 8.2212E-11 8977 20211116_3429_TMUAki_TMT10x_P_F2 119.38 109.79 1617100 2576500 22599 2783100 3395800 3300000 2060500 1985300 2099900 1842700 2333400 1505800 2404900 178400 2832300 3223700 3300400 2161100 2080600 2142900 1805500 2243700 5 5 4 5 5 5 5 5 5 5 5 1617100 2576500 22599 2783100 3395800 3300000 2060500 1985300 2099900 1842700 2333400 1505800 2404900 178400 2832300 3223700 3300400 2161100 2080600 2142900 1805500 2243700 5 5 4 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 125470000 125470000 0 12199 2767 11339 65277;65278;65279 78971;78972;78973;78974;78975 78972 5 LLYCTTGVLLR Unmodified 1307.7271 0.72714296 2081;1989 Q7Z478;Q6P158 DHX29;DHX57 ATP-dependent RNA helicase DHX29;Putative ATP-dependent RNA helicase DHX57 no no 0 0 0 0 By MS/MS 4 0 1 1 69.105 68.926 2 0.002321 22626 20211116_3442_TMUAki_TMT10x_S_F4 79.427 46.306 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12200 2081;1989 11340 65280 78976 78976 1 LLYEANLPENFR Unmodified 1477.7565 0.75652884 2166 Q8IYB5;Q8IYB5-3;Q8IYB5-2 SMAP1 Stromal membrane-associated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 3 2 1 67.932 67.888 2 1.4815E-11 20731 20211116_3434_TMUAki_TMT10x_P_F6 128.44 83.58 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12201 2166 11341 65281;65282;65283 78977;78978;78979 78977 3 LLYNNVSNFGR Unmodified 1295.6622 0.66223452 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.11 2.02 2 2 2 2 1 5 4 56.874 56.697 2 1.2734E-37 19815 20211116_3441_TMUAki_TMT10x_S_F3 277.12 225.27 81893000 140560000 899340 142940000 114550000 156370000 92953000 130370000 125460000 111590000 118770000 76251000 131170000 7336800 145860000 109300000 157880000 96421000 133310000 125970000 109760000 114780000 13 13 6 13 13 13 13 13 13 13 13 45692000 75823000 662380 75734000 77126000 122380000 63914000 74614000 70986000 61442000 64649000 42544000 70750000 4304800 77965000 73624000 120720000 65741000 77879000 71682000 60550000 62561000 7 7 3 7 7 7 7 7 7 7 7 36200000 64739000 236960 67211000 37422000 33984000 29039000 55761000 54470000 50145000 54120000 33706000 60418000 3032000 67894000 35672000 37160000 30681000 55427000 54289000 49205000 52218000 6 6 3 6 6 6 6 6 6 6 6 14125000000 8021900000 6103100000 12202 1471 11342 65284;65285;65286;65287;65288;65289;65290;65291;65292 78980;78981;78982;78983;78984;78985;78986;78987;78988;78989;78990;78991;78992;78993;78994 78992 15 LLYNRPGTVSSLK Unmodified 1446.8195 0.81946344 942 P35659;P35659-2 DEK Protein DEK yes no 0 0 0 1 By MS/MS By MS/MS 3.71 1.03 1 2 2 2 4 3 46.686 46.655 3 1.2409E-12 13415 20211116_3442_TMUAki_TMT10x_S_F4 133.48 98.589 25462000 42755000 162690 45372000 49531000 50644000 31092000 35801000 40878000 32588000 37478000 23708000 39905000 2448000 46181000 47029000 50934000 32805000 37053000 41037000 31959000 36259000 7 7 2 7 7 7 7 7 7 7 7 15908000 25924000 162690 27836000 41639000 43646000 24365000 22797000 25079000 20483000 22977000 14813000 24197000 1806400 28498000 39500000 43019000 25640000 24161000 25408000 20100000 22230000 4 4 2 4 4 4 4 4 4 4 4 9554100 16831000 0 17536000 7891600 6998600 6726800 13004000 15799000 12105000 14501000 8894800 15708000 641650 17682000 7529300 7914600 7165000 12891000 15629000 11859000 14029000 3 3 0 3 3 3 3 3 3 3 3 2649700000 2211300000 438380000 12203 942 11343 65293;65294;65295;65296;65297;65298;65299 78995;78996;78997;78998;78999;79000;79001 78999 7 LLYNRPGTVSSLKK Unmodified 1574.9144 0.91442646 942 P35659;P35659-2 DEK Protein DEK yes no 0 0 0 2 By MS/MS By MS/MS 5.25 0.829 1 1 2 3 1 42.752 42.848 4 0.00027234 10558 20211116_3434_TMUAki_TMT10x_P_F6 84.508 53.28 21357000 34893000 243440 50598000 52385000 34913000 26705000 31501000 29045000 21316000 38244000 19887000 32617000 2379700 50275000 49595000 36458000 28503000 31896000 29772000 21238000 36608000 5 5 3 5 5 5 5 5 5 5 5 9628400 14796000 277.53 20401000 41714000 27869000 17371000 16021000 14848000 11530000 15869000 8964600 13827000 1195500 20528000 39382000 27664000 18815000 16753000 15252000 11446000 15277000 3 3 1 3 3 3 3 3 3 3 3 11728000 20097000 243170 30197000 10671000 7044000 9334100 15480000 14197000 9785900 22375000 10922000 18790000 1184200 29747000 10213000 8793700 9688500 15143000 14520000 9792000 21331000 2 2 2 2 2 2 2 2 2 2 2 1788000000 1387000000 401010000 12204 942 11344 65300;65301;65302;65303 79002;79003;79004;79005;79006 79004 5 LLYPLGGQTNLR Unmodified 1343.7561 0.75613491 1929 Q5SRE5;Q5SRE5-2 NUP188 Nucleoporin NUP188 homolog yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 62.655 62.293 2 8.7546E-09 22149 20211116_3441_TMUAki_TMT10x_S_F3 149.27 106.24 4663400 8312600 33426 8002500 5933700 7274300 5752000 5594500 5388700 5150300 5779500 4342300 7755400 435570 8174900 5686900 7417800 5832700 5759600 5511900 5048300 5563100 2 2 2 2 2 2 2 2 2 2 2 2377300 3990900 20829 4035300 3231100 4786700 3375700 2698400 2608000 2468700 2840100 2213700 3724100 228470 4124700 3103100 4783100 3392800 2842100 2695000 2420500 2732600 1 1 1 1 1 1 1 1 1 1 1 2286100 4321700 12597 3967300 2702500 2487600 2376300 2896000 2780700 2681600 2939300 2128600 4031300 207100 4050200 2583900 2634700 2440000 2917500 2816800 2627800 2830600 1 1 1 1 1 1 1 1 1 1 1 503590000 231600000 271990000 12205 1929 11345 65304;65305 79007;79008 79008 2 LLYPPETGLFLVR Unmodified 1516.8654 0.865351 1000 P41240 CSK Tyrosine-protein kinase CSK yes yes 0 0 0 0 By MS/MS 2 0 1 1 79.36 79.329 2 0.0020818 27463 20211116_3429_TMUAki_TMT10x_P_F2 68.485 28.776 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12206 1000 11346 65306 79009 79009 1 LLYVTPEK Unmodified 961.54843 0.54843354 1217 P54132 BLM Bloom syndrome protein yes yes 0 0 0 0 By MS/MS 7 0 1 1 54.687 55.407 2 0.0064767 17483 20211116_3435_TMUAki_TMT10x_P_F7 86.011 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12207 1217 11347 65307 79010 79010 1 LMAELVHNR Oxidation (M) 1097.5652 0.56516301 3132 Q9UIA9 XPO7 Exportin-7 yes yes 0 0 1 0 By MS/MS 4.5 0.5 1 1 2 32.957 32.943 3 0.0027476 7601 20211116_3431_TMUAki_TMT10x_P_F4 74.376 56.991 1698000 2717400 1086.7 2544200 2643000 2949100 1877800 1491100 1582800 1572600 2156200 1580900 2535000 139780 2613800 2514000 2946600 1935600 1592100 1643500 1532500 2062300 2 2 1 2 2 2 2 2 2 2 2 1698000 2717400 1086.7 2544200 2643000 2949100 1877800 1491100 1582800 1572600 2156200 1580900 2535000 139780 2613800 2514000 2946600 1935600 1592100 1643500 1532500 2062300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 65410000 65410000 0 12208 3132 11348 65308;65309 79011;79012 79011 3152 2 LMAVPNLFMLETVDSVK Oxidation (M) 1921.9893 0.98930724 393 O94903 PROSC Proline synthase co-transcribed bacterial homolog protein yes yes 0 0 1 0 By MS/MS 7 0 1 1 80.355 80.376 3 0.043989 27966 20211116_3435_TMUAki_TMT10x_P_F7 41.386 29.221 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12209 393 11349 65310 79013 79013 300 1 LMAVPNLFMLETVDSVK Unmodified 1905.9944 0.99439262 393 O94903 PROSC Proline synthase co-transcribed bacterial homolog protein yes yes 0 0 0 0 By matching By MS/MS 8 0 2 1 1 81.677 81.678 3 0.0085969 26501 20211116_3447_TMUAki_TMT10x_S_F8 51.265 28.127 603790 1182400 22774 1116600 870280 743200 825050 492800 576080 534510 759890 562360 1103000 75015 1138200 834710 774530 831540 514930 603480 520310 727350 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 603790 1182400 22774 1116600 870280 743200 825050 492800 576080 534510 759890 562360 1103000 75015 1138200 834710 774530 831540 514930 603480 520310 727350 1 1 1 1 1 1 1 1 1 1 1 104330000 50106000 54224000 12210 393 11349 65311;65312 79014 79014 1 LMCPQEIVDYIADKK Oxidation (M) 1837.8954 0.89540686 115 O14561 NDUFAB1 Acyl carrier protein, mitochondrial yes yes 0 0 1 1 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 75.363 75.448 3 8.551E-10 26297 20211116_3446_TMUAki_TMT10x_S_F7 107.98 95.811 34464000 52561000 301280 58219000 25016000 37513000 24820000 16032000 15828000 17183000 32111000 32091000 49066000 2979200 58683000 23998000 39010000 24908000 17419000 17073000 16734000 30473000 5 5 4 5 5 5 5 5 5 5 5 34464000 52561000 301280 58219000 25016000 37513000 24820000 16032000 15828000 17183000 32111000 32091000 49066000 2979200 58683000 23998000 39010000 24908000 17419000 17073000 16734000 30473000 5 5 4 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1417500000 1417500000 0 12211 115 11350 65313;65314;65315 79015;79016;79017;79018;79019;79020 79020 92 6 LMCPQEIVDYIADKK Unmodified 1821.9005 0.90049224 115 O14561 NDUFAB1 Acyl carrier protein, mitochondrial yes yes 0 0 0 1 By MS/MS 7.5 0.5 1 1 2 78.592 78.602 3 1.8533E-09 25238 20211116_3447_TMUAki_TMT10x_S_F8 125.52 105.1 14452000 22033000 300890 27994000 14558000 9762600 15686000 5154600 5546000 5478000 12908000 13459000 20581000 1480100 27864000 14005000 10966000 15538000 5483100 6347000 5336800 12224000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14452000 22033000 300890 27994000 14558000 9762600 15686000 5154600 5546000 5478000 12908000 13459000 20581000 1480100 27864000 14005000 10966000 15538000 5483100 6347000 5336800 12224000 2 2 2 2 2 2 2 2 2 2 2 2024000000 0 2024000000 12212 115 11350 65316;65317 79021;79022 79022 2 LMDEVAGIVAAR Oxidation (M) 1259.6544 0.65437195 64 O00154-4;O00154;O00154-6;O00154-7;O00154-5;O00154-2;O00154-3 ACOT7 Cytosolic acyl coenzyme A thioester hydrolase yes no 0 0 1 0 By MS/MS By MS/MS 3.4 0.49 3 2 3 2 58.306 58.138 2 4.9519E-05 18324 20211116_3442_TMUAki_TMT10x_S_F4 101.54 66.106 21715000 35229000 180230 35139000 28637000 39668000 24083000 29391000 28618000 28214000 29111000 20219000 32872000 1991400 35922000 27350000 39901000 24807000 30366000 28933000 27604000 28067000 5 5 3 5 5 5 5 5 5 5 5 14818000 23545000 153330 23266000 20762000 32153000 17634000 19329000 19495000 18441000 19738000 13798000 21969000 1391800 23887000 19834000 31919000 18108000 20273000 19760000 18047000 19033000 3 3 2 3 3 3 3 3 3 3 3 6896900 11684000 26891 11874000 7875000 7515300 6449600 10062000 9123100 9773500 9372700 6421800 10903000 599620 12034000 7516000 7982200 6699400 10093000 9173000 9557200 9033800 2 2 1 2 2 2 2 2 2 2 2 2369900000 1260800000 1109100000 12213 64 11351 65318;65319;65320;65321;65322 79023;79024;79025;79026 79025 33 4 LMDEVAGIVAAR Unmodified 1243.6595 0.65945733 64 O00154-4;O00154;O00154-6;O00154-7;O00154-5;O00154-2;O00154-3 ACOT7 Cytosolic acyl coenzyme A thioester hydrolase yes no 0 0 0 0 By MS/MS By MS/MS 4.22 1.31 1 2 2 2 2 5 4 74.278 74.199 2 7.7569E-12 24516 20211116_3433_TMUAki_TMT10x_P_F5 171.7 144.58 40231000 65008000 609940 68392000 44492000 51739000 46447000 27438000 26780000 30925000 44723000 37463000 60672000 3924200 69283000 42744000 53189000 46402000 29228000 28741000 30059000 42587000 9 9 7 9 9 9 9 9 9 9 9 25249000 40317000 315080 42563000 27033000 38250000 29577000 16961000 16719000 19489000 27804000 23512000 37628000 2372600 43199000 26001000 38755000 29470000 18395000 17965000 18930000 26478000 5 5 3 5 5 5 5 5 5 5 5 14982000 24691000 294850 25829000 17459000 13489000 16869000 10478000 10060000 11436000 16919000 13952000 23044000 1551600 26085000 16743000 14435000 16931000 10834000 10776000 11129000 16109000 4 4 4 4 4 4 4 4 4 4 4 3481400000 1956800000 1524600000 12214 64 11351 65323;65324;65325;65326;65327;65328;65329;65330;65331 79027;79028;79029;79030;79031;79032;79033;79034;79035 79029 9 LMDLDVEQLGIPEQEYSCVVK Unmodified 2464.1866 0.18656308 635 P12004 PCNA Proliferating cell nuclear antigen yes yes 0 0 0 0 By MS/MS By MS/MS 2.45 1.56 4 3 1 2 1 5 6 72.513 72.471 2;3 2.2184E-19 26259 20211116_3440_TMUAki_TMT10x_S_F2 148.52 126.08 20419000 33268000 46903 32452000 21573000 21449000 22576000 11282000 10349000 12355000 20641000 19011000 31040000 1354100 33000000 20700000 22301000 22469000 12016000 11429000 12022000 19593000 12 12 3 12 12 12 12 12 12 12 12 8867100 13829000 0 13488000 6939300 11058000 8613400 5100800 4715600 5407500 8702000 8254800 12903000 346320 13748000 6684600 11281000 8528800 5495900 5109300 5268600 8271100 6 6 0 6 6 6 6 6 6 6 6 11552000 19439000 46903 18964000 14634000 10391000 13963000 6181300 5633700 6947500 11939000 10756000 18137000 1007800 19252000 14015000 11019000 13940000 6520100 6319600 6753700 11322000 6 6 3 6 6 6 6 6 6 6 6 12056000000 7458200000 4597600000 12215 635 11352 65332;65333;65334;65335;65336;65337;65338;65339;65340;65341;65342 79036;79037;79038;79039;79040;79041;79042;79043;79044;79045;79046;79047;79048;79049;79050 79046 15 LMDLDVEQLGIPEQEYSCVVK Oxidation (M) 2480.1815 0.1814777 635 P12004 PCNA Proliferating cell nuclear antigen yes yes 0 0 1 0 By MS/MS By MS/MS 3.81 1.5 2 2 5 4 5 3 12 9 79.496 79.468 2;3 8.194E-14 25071 20211116_3444_TMUAki_TMT10x_S_F5 122.1 109.42 60324000 105800000 344030 87823000 67047000 86526000 65373000 63176000 64320000 64718000 73855000 56166000 98653000 4072400 90844000 64234000 87702000 66365000 65458000 65819000 63143000 70950000 22 22 8 22 22 22 22 22 22 22 22 32521000 52934000 260750 45145000 25676000 53597000 29885000 30628000 30737000 30367000 36940000 30281000 49364000 2621500 46732000 24727000 53563000 30120000 32292000 31453000 29668000 35442000 12 12 6 12 12 12 12 12 12 12 12 27803000 52864000 83280 42678000 41371000 32929000 35488000 32548000 33583000 34351000 36915000 25885000 49289000 1450900 44113000 39507000 34139000 36246000 33166000 34367000 33475000 35508000 10 10 2 10 10 10 10 10 10 10 10 43745000000 22925000000 20820000000 12216 635 11352 65343;65344;65345;65346;65347;65348;65349;65350;65351;65352;65353;65354;65355;65356;65357;65358;65359;65360;65361;65362;65363 79051;79052;79053;79054;79055;79056;79057;79058;79059;79060;79061;79062;79063;79064;79065;79066;79067;79068;79069;79070;79071;79072;79073;79074 79071 665 24 LMDLLGEGLKR Unmodified 1243.6958 0.69584284 1218 P54136;P54136-2 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 1 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 70.13 70.101 3 3.5329E-08 22167 20211116_3428_TMUAki_TMT10x_P_F1 143.73 120.61 11987000 18552000 6456.5 20827000 15986000 14690000 14045000 6394900 4431900 7269500 12533000 11161000 17320000 989760 20994000 15275000 15158000 14050000 6946700 5216800 7063700 11839000 3 3 1 3 3 3 3 3 3 3 3 7598000 11404000 6456.5 12960000 11585000 11610000 10508000 4085700 2682200 4471000 7788400 7074200 10647000 654770 13091000 11080000 11742000 10473000 4545400 3252400 4350700 7355200 2 2 1 2 2 2 2 2 2 2 2 4389000 7148100 0 7866600 4400600 3080500 3536400 2309100 1749700 2798500 4744200 4086400 6672600 334990 7902900 4195900 3416100 3577000 2401300 1964500 2713000 4483800 1 1 0 1 1 1 1 1 1 1 1 1537500000 1042800000 494650000 12217 1218 11353 65364;65365;65366 79075;79076;79077 79075 3 LMDVGLIAIR Unmodified 1099.6424 0.6423507 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 75.681 75.639 2 2.6277E-06 24445 20211116_3428_TMUAki_TMT10x_P_F1 149.94 107.83 27696000 43604000 18970 42333000 25215000 33024000 34053000 15522000 13519000 19340000 28252000 25787000 40683000 2177100 43137000 24394000 33823000 33444000 16780000 15175000 18731000 26798000 5 5 1 5 5 5 5 5 5 5 5 13059000 18808000 0 18936000 12804000 18003000 15202000 6995000 5769900 8847100 12249000 12159000 17550000 1041100 19295000 12335000 18150000 15002000 7723000 6512600 8564200 11616000 2 2 0 2 2 2 2 2 2 2 2 14637000 24796000 18970 23397000 12411000 15021000 18852000 8527500 7749400 10493000 16003000 13628000 23133000 1136000 23842000 12059000 15673000 18442000 9056700 8662400 10167000 15182000 3 3 1 3 3 3 3 3 3 3 3 2116900000 1311300000 805570000 12218 897 11354 65367;65368;65369;65370 79078;79079;79080;79081;79082 79078 5 LMDVGLIAIR Oxidation (M) 1115.6373 0.63726532 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 1 0 By MS/MS 6 0 1 1 64.632 64.587 2 0.072951 19860 20211116_3445_TMUAki_TMT10x_S_F6 55.503 36.772 3264500 5626000 72359 5156000 3582800 4021100 3479100 4461100 4645400 4439600 4701400 3040200 5247900 342550 5276200 3437100 4176400 3570500 4512900 4676900 4336800 4533500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3264500 5626000 72359 5156000 3582800 4021100 3479100 4461100 4645400 4439600 4701400 3040200 5247900 342550 5276200 3437100 4176400 3570500 4512900 4676900 4336800 4533500 1 1 1 1 1 1 1 1 1 1 1 187230000 0 187230000 12219 897 11354 65371 79083 79083 1108 1 LMELHGEGSSSGK Oxidation (M) 1346.6136 0.61362935 1305 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 1 0 By MS/MS 4 0 1 1 32.599 32.626 3 0.010286 7435 20211116_3431_TMUAki_TMT10x_P_F4 56.599 41.397 1103900 1588900 27622 1721900 1671500 1926400 1023400 810850 1034700 811800 1378600 1028100 1483100 125220 1750300 1588100 1924800 1072300 880740 1064300 792800 1319200 1 1 1 1 1 1 1 1 1 1 1 1103900 1588900 27622 1721900 1671500 1926400 1023400 810850 1034700 811800 1378600 1028100 1483100 125220 1750300 1588100 1924800 1072300 880740 1064300 792800 1319200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 40137000 40137000 0 12220 1305 11355 65372 79084 79084 1759 1 LMFEELR Unmodified 936.47389 0.47388839 3285 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 60.815 60.672 2 0.0024611 21544 20211116_3441_TMUAki_TMT10x_S_F3 125.62 75.086 14043000 21563000 12943 24859000 17497000 15221000 16083000 8646300 6810500 9648600 15933000 13075000 20133000 1147000 24983000 16738000 15952000 16100000 9152700 7658000 9382100 15088000 3 3 2 3 3 3 3 3 3 3 3 5557000 8401400 9529.1 10148000 7982700 9119200 7985500 3415500 2798900 3860900 6598800 5174200 7845900 503570 10214000 7654800 9225300 7939300 3773800 3209200 3752400 6248000 1 1 1 1 1 1 1 1 1 1 1 8486100 13161000 3414.1 14710000 9514800 6101400 8097200 5230700 4011600 5787700 9334400 7900800 12287000 643470 14769000 9082800 6727100 8161000 5378900 4448800 5629600 8839800 2 2 1 2 2 2 2 2 2 2 2 946410000 471240000 475170000 12221 3285 11356 65373;65374;65375 79085;79086;79087 79086 3 LMGLEALK Unmodified 873.49937 0.49937486 1079 P48643 CCT5 T-complex protein 1 subunit epsilon yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 65.665 65.822 2 0.00098332 20563 20211116_3436_TMUAki_TMT10x_P_F8 130.34 62.581 9818300 14885000 188930 15531000 19598000 19222000 14921000 6630200 5096100 7323500 11671000 9143200 13892000 1127100 15854000 18686000 19071000 15076000 7397400 5847600 7123900 11055000 1 1 1 1 1 1 1 1 1 1 1 9818300 14885000 188930 15531000 19598000 19222000 14921000 6630200 5096100 7323500 11671000 9143200 13892000 1127100 15854000 18686000 19071000 15076000 7397400 5847600 7123900 11055000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 687670000 687670000 0 12222 1079 11357 65376;65377;65378;65379 79088;79089;79090;79091 79089 4 LMHQAALLGQALQDSR Oxidation (M) 1766.9098 0.90975179 1871 Q16881;Q16881-3;Q16881-4;Q16881-5;Q16881-2;Q16881-6;Q16881-7 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 0 0 1 0 By MS/MS By MS/MS 8 0 4 2 2 51.99 52.019 3 2.0918E-07 14509 20211116_3447_TMUAki_TMT10x_S_F8 105.63 91.471 5648600 8951700 46885 9193800 8005900 10238000 7131400 7845100 7265300 7004700 8306800 5259500 8353800 519850 9377700 7655700 10312000 7283500 8071900 7422300 6875700 7981000 3 3 2 3 3 3 3 3 3 3 3 4096200 6205100 31704 6608600 6451900 8943400 5707900 5765200 5421500 4978500 6288900 3814000 5791500 376980 6748300 6168000 8895500 5819800 5998500 5558800 4894700 6039800 2 2 1 2 2 2 2 2 2 2 2 1552300 2746600 15181 2585200 1554000 1294800 1423500 2079900 1843800 2026100 2017900 1445500 2562300 142870 2629500 1487700 1416300 1463800 2073500 1863600 1981000 1941200 1 1 1 1 1 1 1 1 1 1 1 759980000 572190000 187780000 12223 1871 11358 65380;65381;65382;65383 79092;79093;79094;79095 79094 2484 4 LMIEMDGTENK Unmodified 1279.5788 0.57882375 520 P06733 ENO1 Alpha-enolase yes yes 0 0 0 0 By MS/MS By MS/MS 3.22 1.31 2 4 4 4 4 10 8 58.704 58.597 2;3 4.6121E-38 19563 20211116_3430_TMUAki_TMT10x_P_F3 289.46 239.34 157210000 211390000 752380 303070000 156420000 106210000 144850000 49461000 39241000 54137000 139750000 146380000 197590000 13087000 299760000 149700000 119070000 144260000 53292000 48109000 52680000 131700000 21 21 11 21 21 21 21 21 21 21 21 81087000 105180000 322770 152410000 100170000 75513000 83135000 24621000 19623000 27451000 71115000 75500000 98317000 7058300 151000000 95622000 80527000 83252000 27686000 24570000 26694000 67008000 10 10 5 10 10 10 10 10 10 10 10 76125000 106220000 429610 150660000 56251000 30695000 61710000 24840000 19618000 26686000 68633000 70880000 99277000 6029000 148770000 54074000 38538000 61007000 25607000 23539000 25987000 64690000 11 11 6 11 11 11 11 11 11 11 11 12617000000 7340200000 5276300000 12224 520 11359 65384;65385;65386;65387;65388;65389;65390;65391;65392;65393;65394;65395;65396;65397;65398;65399;65400;65401 79096;79097;79098;79099;79100;79101;79102;79103;79104;79105;79106;79107;79108;79109;79110;79111;79112;79113;79114;79115;79116;79117;79118 79100 23 LMIEMDGTENK 2 Oxidation (M) 1311.5687 0.56865299 520 P06733 ENO1 Alpha-enolase yes yes 0 0 2 0 By MS/MS By MS/MS 3.25 0.924 3 4 4 1 6 6 42.54 42.51 2;3 4.1632E-05 11703 20211116_3442_TMUAki_TMT10x_S_F4 100.84 80.211 28860000 43177000 400160 49561000 42962000 37553000 30683000 21176000 23253000 21772000 33242000 26873000 40313000 2820500 49930000 40900000 38629000 31535000 22375000 24336000 21240000 31758000 16 16 8 16 16 16 16 16 16 16 16 18481000 26019000 196160 30106000 32688000 29081000 19594000 12031000 13455000 12660000 19848000 17208000 24294000 1848200 30409000 31021000 29306000 20369000 13112000 14184000 12338000 18949000 9 9 4 9 9 9 9 9 9 9 9 10379000 17158000 204000 19455000 10274000 8471800 11089000 9145100 9798100 9112900 13394000 9664800 16019000 972280 19521000 9879000 9323100 11166000 9263200 10152000 8901500 12809000 7 7 4 7 7 7 7 7 7 7 7 3305600000 2190700000 1114900000 12225 520 11359 65402;65403;65404;65405;65406;65407;65408;65409;65410;65411;65412;65413 79119;79120;79121;79122;79123;79124;79125;79126;79127;79128;79129;79130;79131;79132;79133;79134 79132 433;434 16 LMIEMDGTENK Oxidation (M) 1295.5737 0.57373837 520 P06733 ENO1 Alpha-enolase yes yes 0 0 1 0 By MS/MS By MS/MS 3.38 0.949 5 8 8 3 13 11 50.537 50.493 2;3 1.7181E-11 15284 20211116_3431_TMUAki_TMT10x_P_F4 169.58 149.59 143110000 201920000 1188600 246410000 182740000 145690000 140150000 77285000 70001000 82627000 147930000 133250000 188580000 12713000 246730000 174170000 153090000 142220000 82190000 77049000 80478000 140290000 33 33 15 33 33 33 33 33 33 33 33 81705000 111720000 639440 136640000 125620000 107340000 84624000 43198000 40422000 46308000 81215000 76077000 104340000 7576100 137200000 119430000 109720000 86613000 47251000 44504000 45099000 77082000 18 18 9 18 18 18 18 18 18 18 18 61404000 90200000 549170 109770000 57121000 38344000 55527000 34086000 29579000 36319000 66715000 57174000 84239000 5137200 109530000 54737000 43372000 55604000 34938000 32545000 35379000 63208000 15 15 6 15 15 15 15 15 15 15 15 11262000000 6900600000 4361800000 12226 520 11359 65414;65415;65416;65417;65418;65419;65420;65421;65422;65423;65424;65425;65426;65427;65428;65429;65430;65431;65432;65433;65434;65435;65436;65437 79135;79136;79137;79138;79139;79140;79141;79142;79143;79144;79145;79146;79147;79148;79149;79150;79151;79152;79153;79154;79155;79156;79157;79158;79159;79160;79161;79162;79163;79164;79165;79166;79167;79168 79149 433;434 34 LMITDAAR Oxidation (M) 905.46405 0.46405199 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 1 0 By MS/MS 4 0 1 1 36.951 37.083 2 0.0047821 9561 20211116_3442_TMUAki_TMT10x_S_F4 101.41 69.106 251150 430870 1259.6 437900 269150 222870 263600 303090 318640 279980 344310 233860 402080 22248 443020 258010 242110 269370 303420 322670 274390 331350 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 251150 430870 1259.6 437900 269150 222870 263600 303090 318640 279980 344310 233860 402080 22248 443020 258010 242110 269370 303420 322670 274390 331350 1 1 1 1 1 1 1 1 1 1 1 44874000 0 44874000 12227 1057 11360 65438 79169 79169 1374 1 LMITDAAR Unmodified 889.46914 0.46913736 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS 5 0 1 1 43.463 43.596 2 0.01699 10955 20211116_3444_TMUAki_TMT10x_S_F5 71.342 40.781 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12228 1057 11360 65439 79170 79170 1 LMITHIVNQNFK Oxidation (M) 1472.781 0.78096945 2946 Q9NTJ3;Q9NTJ3-2 SMC4 Structural maintenance of chromosomes protein 4 yes no 0 0 1 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 53.562 53.304 3 3.2228E-06 18488 20211116_3441_TMUAki_TMT10x_S_F3 111.86 67.239 5564500 9712700 27466 9721200 7616500 8305300 6218400 9018200 9243300 7369300 8116000 5181300 9063000 514630 9895500 7269500 8564200 6474400 9083700 9231100 7265200 7864100 3 3 2 3 3 3 3 3 3 3 3 2238300 3816500 8381.5 3834400 4227400 5395800 3151400 3588400 3482400 3127200 3223500 2084100 3561300 221240 3933800 4026900 5360000 3263100 3725800 3519000 3073200 3117600 1 1 1 1 1 1 1 1 1 1 1 3326200 5896200 19084 5886800 3389100 2909400 3067000 5429800 5760900 4242100 4892500 3097100 5501700 293390 5961700 3242600 3204200 3211200 5357900 5712000 4191900 4746500 2 2 1 2 2 2 2 2 2 2 2 444940000 290450000 154490000 12229 2946 11361 65440;65441;65442 79171;79172;79173 79173 3037 3 LMIWDTR Oxidation (M) 949.46914 0.46913736 1854;1553 Q16576;Q16576-2;Q09028;Q09028-3;Q09028-2;Q09028-4 RBBP7;RBBP4 Histone-binding protein RBBP7;Histone-binding protein RBBP4 no no 0 0 1 0 By MS/MS 7 0 1 1 54.242 54.962 2 0.041598 17301 20211116_3435_TMUAki_TMT10x_P_F7 77.984 59.202 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12230 1854;1553 11362 65443 79174 79174 2092 1 LMIWDTR Unmodified 933.47422 0.47422274 1854;1553 Q16576;Q16576-2;Q09028;Q09028-3;Q09028-2;Q09028-4 RBBP7;RBBP4 Histone-binding protein RBBP7;Histone-binding protein RBBP4 no no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 62.384 62.572 2 0.0071368 19226 20211116_3436_TMUAki_TMT10x_P_F8 101.69 73.268 7936500 12889000 0 13066000 12474000 12470000 11900000 5654000 4724500 5526900 8858700 7389000 12028000 644060 13308000 11941000 12587000 11878000 6088700 5267100 5403100 8417700 2 2 0 2 2 2 2 2 2 2 2 7936500 12889000 0 13066000 12474000 12470000 11900000 5654000 4724500 5526900 8858700 7389000 12028000 644060 13308000 11941000 12587000 11878000 6088700 5267100 5403100 8417700 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 494270000 494270000 0 12231 1854;1553 11362 65444;65445 79175;79176;79177 79176 3 LMLERNLIIGK Oxidation (M) 1314.7693 0.76934213 3363 yes no 0 0 1 1 By MS/MS By MS/MS 1.25 0.433 3 1 3 1 36.92 36.846 3 0.05992 10215 20211116_3429_TMUAki_TMT10x_P_F2 44.188 19.334 + 4622200 6730600 5721.1 7057800 7557700 8560600 5212700 5489800 5595200 5384300 5939900 4303400 6281600 386340 7199500 7185200 8559300 5421900 5733500 5687700 5263000 5719300 4 4 1 4 4 4 4 4 4 4 4 3903600 5485700 0 5793000 6771600 7845000 4390700 4578900 4575800 4481700 4867100 3634300 5119800 320490 5918800 6430300 7792000 4583900 4817400 4657300 4381100 4686100 3 3 0 3 3 3 3 3 3 3 3 718560 1244900 5721.1 1264700 786090 715650 821950 910890 1019400 902590 1072800 669090 1161700 65851 1280600 754980 767310 837970 916030 1030400 881860 1033200 1 1 1 1 1 1 1 1 1 1 1 569870000 511460000 58405000 12232 3363 11363 65446;65447;65448;65449 79178;79179 79179 3301 2 LMMDPLSGQNR 2 Oxidation (M) 1292.5853 0.58530611 211 O43390;O43390-2;O43390-3;O43390-4 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 2 0 By MS/MS By MS/MS 4.67 0.745 3 2 1 2 4 36.944 37.051 2;3 9.684E-05 9006 20211116_3442_TMUAki_TMT10x_S_F4 97.857 88.464 2751100 4379400 32663 5294300 6586300 5702500 3520200 3388800 3825000 2870600 4168200 2561700 4089900 307120 5342500 6239800 5732100 3740400 3546700 3890100 2824900 4010300 8 8 7 8 8 8 8 8 8 8 8 2071500 3268800 24785 3861900 6023200 5220900 2956400 2613600 3013600 2205300 3175900 1928900 3052400 245070 3918200 5699400 5176300 3160900 2776600 3069100 2170600 3058700 3 3 2 3 3 3 3 3 3 3 3 679520 1110600 7877.9 1432400 563050 481570 563760 775230 811340 665330 992270 632760 1037500 62048 1424300 540380 555840 579470 770090 820990 654320 951600 5 5 5 5 5 5 5 5 5 5 5 228400000 125380000 103020000 12233 211 11364 65450;65451;65452;65453;65454;65455 79180;79181;79182;79183;79184;79185;79186;79187;79188;79189 79185 167;168 10 LMMDPLTGLNR 2 Oxidation (M) 1291.6264 0.62644264 271;272 O60506;O60506-2;O60506-3;O60506-4;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 2 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 50.59 50.746 2 0.0043114 14063 20211116_3445_TMUAki_TMT10x_S_F6 65.474 48.088 9998600 16391000 184930 19039000 19504000 23174000 12998000 21284000 22258000 16552000 17378000 9310900 15304000 1122100 19298000 18548000 23310000 13811000 21593000 22065000 16361000 16915000 5 5 3 5 5 5 5 5 5 5 5 6035800 9567800 17435 11357000 16074000 19255000 10444000 12088000 12678000 8987600 9964900 5620000 8934500 644880 11578000 15271000 18967000 10957000 12559000 12704000 8905500 9696700 3 3 1 3 3 3 3 3 3 3 3 3962800 6822800 167500 7682100 3429900 3919100 2553600 9196000 9579900 7564500 7413100 3691000 6369600 477180 7720000 3276900 4343200 2853500 9034700 9361600 7455100 7218300 2 2 2 2 2 2 2 2 2 2 2 1651700000 1024000000 627670000 12234 271;272 11365 65456;65457;65458;65459;65460 79190;79191;79192 79192 215;216 3 LMMDPLTGLNR Oxidation (M) 1275.6315 0.63152802 271;272 O60506;O60506-2;O60506-3;O60506-4;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 1 0 By MS/MS By matching 7 0 2 1 1 61.224 61.826 2 0.0052334 20148 20211116_3435_TMUAki_TMT10x_P_F7 76.345 53.605 5671200 8914800 111350 8259500 8317200 13340000 6988100 5936500 5699700 6586600 6825900 5281300 8316000 611020 8548300 7948300 13110000 7117900 6428900 5894800 6406100 6549800 1 1 1 1 1 1 1 1 1 1 1 5671200 8914800 111350 8259500 8317200 13340000 6988100 5936500 5699700 6586600 6825900 5281300 8316000 611020 8548300 7948300 13110000 7117900 6428900 5894800 6406100 6549800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1620700000 994820000 625860000 12235 271;272 11365 65461;65462 79193 79193 215;216 1 LMMDPLTGLNR Unmodified 1259.6366 0.6366134 271;272 O60506;O60506-2;O60506-3;O60506-4;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 70.231 70.295 2 1.5494E-14 21879 20211116_3447_TMUAki_TMT10x_S_F8 191.45 151.43 14904000 23474000 24747 25591000 16069000 15296000 17258000 8783600 7320100 9055700 15936000 13875000 21911000 1096200 25803000 15427000 16071000 17135000 9267400 8187500 8833100 15106000 3 3 1 3 3 3 3 3 3 3 3 5980000 9309600 0 10343000 6524200 8458200 8308000 3818600 3306400 3858200 6229000 5567700 8690800 470200 10450000 6298400 8628600 8179100 4117800 3686300 3766500 5918400 1 1 0 1 1 1 1 1 1 1 1 8923600 14164000 24747 15248000 9544500 6837900 8949600 4965100 4013700 5197500 9707400 8307700 13221000 626000 15353000 9128800 7442600 8956300 5149600 4501200 5066600 9188100 2 2 1 2 2 2 2 2 2 2 2 1764200000 731230000 1032900000 12236 271;272 11365 65463;65464;65465 79194;79195;79196 79196 3 LMNDMTAVALNYGIYKQDLPSLDEKPR 2 Oxidation (M) 3126.5366 0.53657159 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 2 2 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 68.052 68.298 4 8.0877E-25 21152 20211116_3447_TMUAki_TMT10x_S_F8 154.69 147.65 12452000 22009000 163730 17658000 16808000 25745000 15075000 27559000 27424000 25675000 21022000 11594000 20520000 1089800 18443000 16072000 25769000 15764000 27872000 27132000 25153000 20478000 5 5 3 5 5 5 5 5 5 5 5 5486000 9241400 40122 7489400 6164800 14756000 6518900 11034000 11376000 10046000 8693200 5108000 8616700 466480 7872800 5920100 14501000 6744200 11377000 11266000 9852200 8469100 2 2 1 2 2 2 2 2 2 2 2 6965800 12768000 123600 10169000 10643000 10989000 8556600 16525000 16048000 15629000 12329000 6485800 11904000 623330 10570000 10152000 11268000 9020300 16495000 15866000 15301000 12009000 3 3 2 3 3 3 3 3 3 3 3 3306800000 1354300000 1952500000 12237 2345 11366 65466;65467;65468 79197;79198;79199;79200;79201 79201 2688;2689 5 LMNDMTAVALNYGIYKQDLPSLDEKPR Oxidation (M) 3110.5417 0.54165696 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 1 2 By MS/MS 8 0 1 1 72.872 72.904 4 0.015514 23525 20211116_3436_TMUAki_TMT10x_P_F8 42.275 32.974 3274600 6099900 116650 5298500 3425900 6405200 4129700 2542700 2060300 3184000 4290200 3049900 5688800 382320 5478500 3309700 6370100 4088100 2799300 2265600 3083200 4069600 1 1 1 1 1 1 1 1 1 1 1 3274600 6099900 116650 5298500 3425900 6405200 4129700 2542700 2060300 3184000 4290200 3049900 5688800 382320 5478500 3309700 6370100 4088100 2799300 2265600 3083200 4069600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 837960000 837960000 0 12238 2345 11366 65469 79202 79202 2688;2689 1 LMNESLMLVTALNPHIGYDK 2 Oxidation (M) 2290.1337 0.13373965 547 P07954;P07954-2 FH Fumarate hydratase, mitochondrial yes no 0 0 2 0 By MS/MS By MS/MS 8 0 3 2 1 73.094 72.936 3 2.3341E-05 23549 20211116_3436_TMUAki_TMT10x_P_F8 80.98 70.192 1918100 3107300 0 3119500 2401700 2141800 2078800 2071800 2211500 2079400 2218500 1785900 2899500 152310 3166900 2293900 2240700 2129700 2110200 2244300 2030500 2139900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1918100 3107300 0 3119500 2401700 2141800 2078800 2071800 2211500 2079400 2218500 1785900 2899500 152310 3166900 2293900 2240700 2129700 2110200 2244300 2030500 2139900 1 1 0 1 1 1 1 1 1 1 1 318100000 0 318100000 12239 547 11367 65470;65471;65472 79203;79204;79205 79203 494;495 3 LMNESLMLVTALNPHIGYDK Oxidation (M) 2274.1388 0.13882503 547 P07954;P07954-2 FH Fumarate hydratase, mitochondrial yes no 0 0 1 0 By MS/MS 8 0 1 1 78.353 78.302 3 0.0066339 25118 20211116_3447_TMUAki_TMT10x_S_F8 48.824 33.896 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12240 547 11367 65473 79206 79206 494;495 1 LMNETTAVALAYGIYK Oxidation (M) 1772.9019 0.90187244 916;442 P34932;O95757 HSPA4;HSPA4L Heat shock 70 kDa protein 4;Heat shock 70 kDa protein 4L no no 0 0 1 0 By MS/MS By MS/MS 8 0 2 1 1 75.705 75.659 3 1.4738E-07 24558 20211116_3436_TMUAki_TMT10x_P_F8 110.35 88.474 7844600 13646000 65015 11747000 8746300 15427000 9780500 10891000 10527000 11300000 10062000 7304400 12726000 706390 12173000 8415200 15387000 9889800 11314000 10660000 11019000 9720400 3 3 1 3 3 3 3 3 3 3 3 5386700 9877400 65015 8246900 6126700 12771000 6794500 7839500 7748100 7998200 7228300 5016000 9210500 511610 8596000 5894900 12620000 6886500 8224300 7822200 7804900 6989000 2 2 1 2 2 2 2 2 2 2 2 2457900 3768200 0 3500100 2619600 2655900 2986100 3051300 2778900 3301600 2833200 2288500 3515100 194780 3577000 2520300 2766600 3003300 3089900 2838000 3214200 2731400 1 1 0 1 1 1 1 1 1 1 1 1405100000 792200000 612890000 12241 916;442 11368 65474;65475 79207;79208;79209 79208 325;1153 3 LMNETTAVALAYGIYKQDLPALEEKPR Oxidation (M) 3049.5794 0.57942268 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 1 2 By matching By MS/MS 7 0.816 1 1 1 1 2 77.791 77.785 4 6.1115E-09 24920 20211116_3447_TMUAki_TMT10x_S_F8 93.949 87.788 5783600 11003000 214420 6725300 11988000 9730000 8008500 9619800 11442000 10125000 10221000 5386700 10251000 766230 7207900 11407000 9724500 8437700 9801400 11446000 9867900 9897500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5783600 11003000 214420 6725300 11988000 9730000 8008500 9619800 11442000 10125000 10221000 5386700 10251000 766230 7207900 11407000 9724500 8437700 9801400 11446000 9867900 9897500 1 1 1 1 1 1 1 1 1 1 1 3941800000 476440000 3465300000 12242 916 11369 65476;65477;65478 79210 79210 1153 1 LMPGASK Oxidation (M) 718.36836 0.36836069 3377 yes no 0 0 1 0 By MS/MS 2 0 1 1 61.246 60.976 3 0.037431 20076 20211116_3429_TMUAki_TMT10x_P_F2 57.559 38.828 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12243 3377 11370 65479 79211 79211 3309 1 LMQLVDHR Oxidation (M) 1026.528 0.52804923 2368 Q92841;Q92841-3;Q92841-1;Q92841-2 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 1 0 By MS/MS By MS/MS 5.4 1.02 1 2 1 1 2 3 35.404 35.486 3 0.040169 8882 20211116_3433_TMUAki_TMT10x_P_F5 46.39 31.716 1294600 1921400 85519 2734600 1686100 2063200 1582000 1410100 1279400 1342600 1770300 1206000 1795900 192520 2722200 1619300 2128600 1600800 1464600 1332200 1314100 1692500 3 3 3 3 3 3 3 3 3 3 3 680540 1003900 52546 1460400 1017100 1438300 943170 752530 642140 735700 921040 634040 938420 110110 1457300 976610 1451200 951250 799220 676340 719210 879860 1 1 1 1 1 1 1 1 1 1 1 614060 917490 32973 1274100 668980 624920 638830 657580 637230 606920 849220 571990 857450 82409 1264900 642690 677400 649520 665420 655860 594840 812640 2 2 2 2 2 2 2 2 2 2 2 129600000 88393000 41210000 12244 2368 11371 65480;65481;65482;65483;65484 79212;79213;79214;79215 79212 2706 4 LMSSLPNFCGIFNHLER Oxidation (M) 2049.9765 0.97645115 2535 Q96PU8;Q96PU8-9;Q96PU8-8;Q96PU8-6;Q96PU8-3;Q96PU8-5 QKI Protein quaking yes no 0 0 1 0 By MS/MS 3 0 1 1 76.301 76.183 3 0.00039868 26658 20211116_3430_TMUAki_TMT10x_P_F3 65.175 39.309 1949500 3183500 0 2871200 2154500 3898900 2171300 2380000 2057000 2333600 2756200 1814700 2969400 103250 2966600 2062200 3874400 2198000 2495100 2122500 2281100 2637100 1 1 0 1 1 1 1 1 1 1 1 1949500 3183500 0 2871200 2154500 3898900 2171300 2380000 2057000 2333600 2756200 1814700 2969400 103250 2966600 2062200 3874400 2198000 2495100 2122500 2281100 2637100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 472680000 472680000 0 12245 2535 11372 65485 79216 79216 2792 1 LMSSNSTDLPLNIECFMNDK 2 Oxidation (M) 2360.0334 0.033433257 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 2 0 By MS/MS 6 0 1 1 73.767 73.715 3 0.0063457 23181 20211116_3434_TMUAki_TMT10x_P_F6 49.655 40.608 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12246 2345 11373 65486 79217 79217 2690;2691 1 LMTDTINEPILLCR Oxidation (M) 1703.8586 0.85862742 244 O43776 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 0 0 1 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 64.758 64.836 2;3 1.8486E-25 19621 20211116_3444_TMUAki_TMT10x_S_F5 187.16 159.83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12247 244 11374 65487;65488 79218;79219 79219 195 2 LMTDTINEPILLCR Unmodified 1687.8637 0.8637128 244 O43776 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 By MS/MS 6 0 1 1 73.683 73.609 2 4.2841E-43 23521 20211116_3445_TMUAki_TMT10x_S_F6 250.7 225.26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12248 244 11374 65489 79220 79220 1 LMTEILGR Unmodified 931.51609 0.51608756 246 O43809 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 61.829 62.306 2 0.00043225 20851 20211116_3446_TMUAki_TMT10x_S_F7 147.52 57.969 4864500 7889300 0 8918800 3945200 3877600 4793700 2623100 2529300 3409200 5199800 4528100 7365400 236010 8950600 3794100 4233000 4748000 2753900 2767000 3297200 4933400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4864500 7889300 0 8918800 3945200 3877600 4793700 2623100 2529300 3409200 5199800 4528100 7365400 236010 8950600 3794100 4233000 4748000 2753900 2767000 3297200 4933400 1 1 0 1 1 1 1 1 1 1 1 369650000 0 369650000 12249 246 11375 65490;65491 79221;79222 79222 2 LMVELSK Unmodified 818.45718 0.45717569 1079 P48643 CCT5 T-complex protein 1 subunit epsilon yes yes 0 0 0 0 By MS/MS By matching 6.67 0.471 1 2 2 1 57.294 57.736 2 0.0042074 16598 20211116_3434_TMUAki_TMT10x_P_F6 114.6 9.4859 6720500 9876500 73073 11043000 9720300 9673900 7456300 4394100 3730800 4604200 7396400 6258000 9220200 667290 11163000 9267800 9820900 7566300 4740300 4088500 4488000 7021600 1 1 1 1 1 1 1 1 1 1 1 6720500 9876500 73073 11043000 9720300 9673900 7456300 4394100 3730800 4604200 7396400 6258000 9220200 667290 11163000 9267800 9820900 7566300 4740300 4088500 4488000 7021600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1393500000 712640000 680820000 12250 1079 11376 65492;65493;65494 79223 79223 1 LMVELSK Oxidation (M) 834.45209 0.45209032 1079 P48643 CCT5 T-complex protein 1 subunit epsilon yes yes 0 0 1 0 By MS/MS By MS/MS 5.4 1.02 1 2 1 1 2 3 50.173 50.406 2 0.072209 13676 20211116_3444_TMUAki_TMT10x_S_F5 69.198 6.5393 33475000 52579000 561080 52571000 42408000 49674000 35119000 48970000 50304000 43152000 47078000 31171000 49062000 3190200 53588000 40498000 50767000 36474000 49651000 50397000 42384000 45514000 5 5 3 5 5 5 5 5 5 5 5 12251000 19307000 279290 19341000 19381000 27014000 14825000 17284000 17989000 16243000 17715000 11409000 18016000 1375800 19843000 18485000 26828000 15374000 18033000 18152000 15907000 17098000 2 2 2 2 2 2 2 2 2 2 2 21225000 33272000 281790 33230000 23027000 22660000 20294000 31686000 32316000 26908000 29362000 19762000 31046000 1814400 33745000 22013000 23939000 21100000 31617000 32245000 26477000 28416000 3 3 1 3 3 3 3 3 3 3 3 2829400000 1296700000 1532600000 12251 1079 11376 65495;65496;65497;65498;65499 79224 79224 1407 1 LMVNPFAYEEYRK Oxidation (M) 1674.8076 0.80757813 2648 Q9BSC4;Q9BSC4-2;Q9BSC4-4 NOL10 Nucleolar protein 10 yes no 0 0 1 1 By MS/MS 8 0 1 1 59.297 59.474 3 2.5949E-06 17962 20211116_3436_TMUAki_TMT10x_P_F8 109.16 95.731 8401100 14111000 169070 13284000 11421000 20770000 11228000 12711000 11378000 11580000 12140000 7823400 13164000 888920 13723000 10956000 20517000 11404000 13296000 11595000 11356000 11687000 2 2 1 2 2 2 2 2 2 2 2 8401100 14111000 169070 13284000 11421000 20770000 11228000 12711000 11378000 11580000 12140000 7823400 13164000 888920 13723000 10956000 20517000 11404000 13296000 11595000 11356000 11687000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 323920000 323920000 0 12252 2648 11377 65500 79225;79226 79226 2880 2 LMVPLLK Unmodified 812.51938 0.51938202 84 O00410;O00410-2;O00410-3;O60518 IPO5;RANBP6 Importin-5;Ran-binding protein 6 yes no 0 0 0 0 By MS/MS By MS/MS 4 0 3 2 1 71.615 71.462 2 0.0060475 23630 20211116_3442_TMUAki_TMT10x_S_F4 105.42 48.908 9961700 14879000 32393 16836000 8161800 7385400 9930500 6262200 5250800 6950300 10433000 9275600 13891000 830870 16896000 7872300 8081400 9835500 6444200 5730400 6759700 9903400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9961700 14879000 32393 16836000 8161800 7385400 9930500 6262200 5250800 6950300 10433000 9275600 13891000 830870 16896000 7872300 8081400 9835500 6444200 5730400 6759700 9903400 1 1 1 1 1 1 1 1 1 1 1 397260000 0 397260000 12253 84 11378 65501;65502;65503 79227;79228;79229 79229 3 LNAEHDGTFYFK Unmodified 1440.6674 0.66737948 35 CON__P01045-1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 51.502 51.646 3 2.9673E-05 14085 20211116_3434_TMUAki_TMT10x_P_F6 88.087 64.236 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12254 35 11379 65504;65505 79230;79231 79230 2 LNARPGVGGVR Unmodified 1094.6309 0.63087481 2725 Q9BY77;Q9BY77-2 POLDIP3 Polymerase delta-interacting protein 3 yes no 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 30.139 30.032 3 4.1292E-07 9074 20211116_3441_TMUAki_TMT10x_S_F3 136.96 115.41 696230 1166600 6775.6 1046300 1015100 1324000 915170 825000 837690 722040 953360 648300 1088200 66967 1080000 971170 1320500 931130 860910 859700 709430 916090 3 3 2 3 3 3 3 3 3 3 3 496680 839160 6775.6 754020 770230 1101400 665390 587690 605230 525920 685250 462510 782710 51324 780430 736310 1089100 678550 621600 621190 516190 658560 2 2 2 2 2 2 2 2 2 2 2 199550 327490 0 292260 244920 222630 249780 237310 232470 196120 268110 185780 305450 15642 299600 234860 231430 252570 239310 238520 193240 257530 1 1 0 1 1 1 1 1 1 1 1 68805000 32951000 35854000 12255 2725 11380 65506;65507;65508;65509 79232;79233;79234 79234 3 LNCQVIGASVDSHFCHLAWVNTPK Unmodified 2752.3214 0.32137427 1533 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.17 0.687 1 3 2 4 2 65.807 65.54 4;5 1.5474E-38 21903 20211116_3429_TMUAki_TMT10x_P_F2 196.95 188.56 35961000 59237000 773800 65156000 38444000 65140000 42940000 21301000 18538000 25021000 37587000 33488000 55297000 3592500 66052000 37012000 65376000 42565000 23981000 20603000 24284000 35669000 8 8 7 8 8 8 8 8 8 8 8 32398000 52436000 734180 58192000 34292000 60834000 38562000 19073000 16458000 22510000 33123000 30170000 48950000 3252000 58998000 33023000 60873000 38208000 21602000 18302000 21843000 31437000 7 7 6 7 7 7 7 7 7 7 7 3562800 6800800 39619 6964000 4151800 4305200 4377600 2228200 2080000 2511300 4464000 3317600 6346500 340550 7053200 3989000 4503200 4357400 2378800 2301200 2441000 4232500 1 1 1 1 1 1 1 1 1 1 1 9113200000 5869100000 3244200000 12256 1533 11381 65510;65511;65512;65513;65514;65515 79235;79236;79237;79238;79239;79240;79241;79242 79236 8 LNCQVIGASVDSHFCHLAWVNTPKK Unmodified 2880.4163 0.41633729 1533 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 60.989 60.815 5 8.718E-18 21569 20211116_3441_TMUAki_TMT10x_S_F3 138.93 121.43 25857000 41393000 134160 47825000 30501000 37243000 26620000 16290000 12039000 16146000 27384000 24075000 38648000 2259500 48177000 29152000 38123000 26753000 17616000 13430000 15775000 25942000 6 6 4 6 6 6 6 6 6 6 6 15302000 22957000 71948 28220000 18497000 29167000 17186000 8895900 6053300 8764600 15352000 14248000 21441000 1335500 28431000 17705000 29199000 17156000 10064000 6975300 8565400 14522000 3 3 2 3 3 3 3 3 3 3 3 10554000 18436000 62213 19605000 12004000 8076300 9434300 7394100 5985900 7381200 12032000 9827500 17207000 923930 19746000 11447000 8923400 9597300 7551900 6455100 7209400 11420000 3 3 2 3 3 3 3 3 3 3 3 3578400000 1916800000 1661600000 12257 1533 11382 65516;65517;65518;65519 79243;79244;79245;79246;79247;79248 79247 6 LNDHFPLVVWQTGSGTQTNMNVNEVISNR Oxidation (M) 3285.5837 0.58367321 547 P07954;P07954-2 FH Fumarate hydratase, mitochondrial yes no 0 0 1 0 By MS/MS By matching 8 0 2 1 1 71.232 71.177 4 2.7112E-09 22810 20211116_3436_TMUAki_TMT10x_P_F8 86.48 75.479 2941100 4791700 0 3904700 3157700 8481600 4460800 6471100 5777400 5837400 4976900 2738300 4467900 222830 4114500 3059000 8313000 4497400 6661900 5791500 5727200 4825800 2 2 0 2 2 2 2 2 2 2 2 2941100 4791700 0 3904700 3157700 8481600 4460800 6471100 5777400 5837400 4976900 2738300 4467900 222830 4114500 3059000 8313000 4497400 6661900 5791500 5727200 4825800 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1790200000 997240000 792920000 12258 547 11383 65520;65521 79249;79250 79250 496 2 LNDYIFSFDK Unmodified 1260.6027 0.60265396 1218 P54136;P54136-2 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 77.784 77.807 2 3.3644E-08 26907 20211116_3435_TMUAki_TMT10x_P_F7 162.36 122.65 49331000 88491000 156600 77276000 58410000 70470000 61197000 51364000 51271000 54771000 61031000 45927000 82530000 3577300 79524000 56034000 71781000 61622000 53289000 52941000 53352000 58573000 5 5 1 5 5 5 5 5 5 5 5 21157000 35948000 0 31614000 23947000 40813000 25117000 21808000 20322000 22481000 24679000 19697000 33527000 1482500 32695000 22971000 40583000 25267000 23152000 21038000 21929000 23672000 2 2 0 2 2 2 2 2 2 2 2 28174000 52543000 156600 45661000 34463000 29657000 36081000 29556000 30950000 32290000 36352000 26230000 49002000 2094800 46829000 33064000 31197000 36355000 30137000 31902000 31423000 34900000 3 3 1 3 3 3 3 3 3 3 3 6031600000 2751500000 3280100000 12259 1218 11384 65522;65523;65524;65525 79251;79252;79253;79254;79255 79252 5 LNDYLQIETIQALEELAAK Unmodified 2174.1471 0.14706475 2747 Q9C0B1 FTO Alpha-ketoglutarate-dependent dioxygenase FTO yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 82.985 82.985 3 7.6746E-18 27911 20211116_3431_TMUAki_TMT10x_P_F4 151.23 105.9 2419900 3574300 19999 3516200 2644700 3889000 2923600 2514300 2381300 2358400 2941700 2253100 3335000 198480 3596800 2542500 3908000 2934100 2621100 2466200 2309700 2820400 3 3 1 3 3 3 3 3 3 3 3 1660100 2331400 0 2207500 1623900 2976900 1751100 1647600 1558400 1428600 1932300 1545500 2175000 113190 2272300 1558700 2955400 1763600 1735700 1607100 1404300 1852400 2 2 0 2 2 2 2 2 2 2 2 759840 1242900 19999 1308600 1020800 912080 1172500 866730 822890 929770 1009500 707640 1160000 85290 1324500 983860 952610 1170500 885410 859070 905460 968020 1 1 1 1 1 1 1 1 1 1 1 332980000 166700000 166290000 12260 2747 11385 65526;65527 79256;79257;79258 79256 3 LNEAAAGLNQAATELVQASR Unmodified 2026.0443 0.044331016 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 2 4 3 3 77.463 77.483 2;3 7.0159E-59 26793 20211116_3435_TMUAki_TMT10x_P_F7 253.02 227.68 8344400 13478000 30764 12829000 8780200 15825000 9544500 10095000 9919400 10350000 11096000 7769100 12574000 663080 13178000 8435800 15808000 9653000 10561000 10117000 10098000 10667000 4 4 1 4 4 4 4 4 4 4 4 7101800 11392000 30764 10790000 7153300 14339000 7848200 8647000 8522100 8920000 9424200 6612300 10628000 560840 11103000 6874500 14261000 7945300 9087100 8672300 8700500 9063200 3 3 1 3 3 3 3 3 3 3 3 1242500 2086100 0 2039100 1626900 1485200 1696300 1448300 1397400 1430200 1671500 1156900 1946400 102240 2075200 1561300 1546300 1707700 1473800 1444400 1397500 1603900 1 1 0 1 1 1 1 1 1 1 1 3392200000 2324500000 1067700000 12261 3293 11386 65528;65529;65530;65531;65532;65533 79259;79260;79261;79262;79263 79259 5 LNEAQPSTIATSMR Oxidation (M) 1533.7457 0.74570615 1258 P56537;P56537-2 EIF6 Eukaryotic translation initiation factor 6 yes no 0 0 1 0 By MS/MS By MS/MS 4.6 0.49 2 3 3 2 37.079 37.152 2;3 0.00011986 8320 20211116_3444_TMUAki_TMT10x_S_F5 98.182 80.784 2289100 3512600 17806 4312600 4932800 3987900 2862200 2756000 2964700 2187000 3255600 2131100 3280600 194080 4338200 4675600 4054900 3014700 2847300 3021900 2159400 3131600 5 5 2 5 5 5 5 5 5 5 5 1692600 2517300 17806 3127600 4237300 3495400 2323400 2078000 2170600 1643600 2383400 1575900 2351200 164530 3153000 4014000 3506400 2452100 2171300 2222400 1623100 2292600 3 3 2 3 3 3 3 3 3 3 3 596520 995310 0 1185100 695530 492440 538790 678070 794090 543460 872200 555250 929440 29552 1185200 661580 548560 562620 676020 799450 536320 838960 2 2 0 2 2 2 2 2 2 2 2 465390000 366180000 99205000 12262 1258 11387 65534;65535;65536;65537;65538 79264;79265;79266;79267;79268 79267 1704 5 LNEAQPSTIATSMR Unmodified 1517.7508 0.75079153 1258 P56537;P56537-2 EIF6 Eukaryotic translation initiation factor 6 yes no 0 0 0 0 By MS/MS 4.67 0.471 1 2 3 45.587 45.73 2;3 4.815E-37 12942 20211116_3433_TMUAki_TMT10x_P_F5 242.94 221.47 5478500 8517300 137080 11599000 13105000 13291000 9262300 7527500 7259900 6064600 7947500 5102000 7959100 686780 11640000 12478000 13306000 9534100 7900500 7497700 5983300 7645300 3 3 2 3 3 3 3 3 3 3 3 5478500 8517300 137080 11599000 13105000 13291000 9262300 7527500 7259900 6064600 7947500 5102000 7959100 686780 11640000 12478000 13306000 9534100 7900500 7497700 5983300 7645300 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 569990000 569990000 0 12263 1258 11387 65539;65540;65541 79269;79270;79271;79272 79272 4 LNEGVVEFASYGDLK Unmodified 1639.8094 0.80935227 1612 Q13243;Q13243-3 SRSF5 Serine/arginine-rich splicing factor 5 yes no 0 0 0 0 By MS/MS By MS/MS 4.33 1.11 2 1 2 1 2 4 74.733 74.671 3 1.1118E-09 24713 20211116_3433_TMUAki_TMT10x_P_F5 126.88 104.08 24016000 40601000 289810 38879000 29031000 31152000 28893000 25918000 25569000 26648000 31489000 22364000 37879000 2325000 39669000 27850000 32095000 29212000 26637000 26367000 25996000 30193000 9 9 8 9 9 9 9 9 9 9 9 5487200 9257200 69389 8461600 5965900 10862000 7216700 6273900 5911600 6351600 7522300 5109700 8634900 526300 8724300 5756000 10814000 7214400 6612700 6128300 6200100 7206700 2 2 2 2 2 2 2 2 2 2 2 18529000 31344000 220420 30417000 23065000 20290000 21676000 19644000 19657000 20297000 23966000 17254000 29244000 1798700 30945000 22094000 21280000 21998000 20025000 20239000 19796000 22986000 7 7 6 7 7 7 7 7 7 7 7 2871100000 622600000 2248500000 12264 1612 11388 65542;65543;65544;65545;65546;65547 79273;79274;79275;79276;79277;79278;79279;79280;79281;79282 79275 10 LNEHFLNTTDFLDTIK Unmodified 1919.9629 0.9628928 1083 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 6 1.41 2 2 2 2 2 5 5 76.756 76.761 3 1.2357E-21 26876 20211116_3446_TMUAki_TMT10x_S_F7 173.51 154.91 150110000 235280000 2237700 224470000 140870000 196750000 170480000 120860000 112350000 134570000 170060000 139780000 219500000 13054000 229340000 135920000 200440000 169580000 127120000 118890000 130870000 162260000 13 13 10 13 13 13 13 13 13 13 13 69808000 104920000 1171600 102110000 55932000 109810000 71785000 56973000 54393000 67465000 79438000 65004000 97893000 5493600 104480000 54077000 110210000 71447000 60907000 56986000 65458000 75856000 6 6 4 6 6 6 6 6 6 6 6 80305000 130360000 1066100 122360000 84936000 86940000 98700000 63888000 57958000 67108000 90622000 74779000 121610000 7560000 124860000 81841000 90236000 98134000 66216000 61904000 65408000 86408000 7 7 6 7 7 7 7 7 7 7 7 24482000000 11364000000 13118000000 12265 1083 11389 65548;65549;65550;65551;65552;65553;65554;65555;65556;65557 79283;79284;79285;79286;79287;79288;79289;79290;79291;79292;79293;79294;79295 79293 13 LNELLVK Unmodified 827.51165 0.5116541 1578 Q12931;Q12931-2 TRAP1 Heat shock protein 75 kDa, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 60.819 61.234 2 0.010235 18093 20211116_3434_TMUAki_TMT10x_P_F6 98.392 32.135 11501000 18329000 42128 18502000 14076000 16077000 13807000 13640000 13593000 12929000 16506000 10709000 17104000 1028900 18826000 13493000 16473000 14012000 13970000 13941000 12657000 15833000 2 2 2 2 2 2 2 2 2 2 2 4646300 6967500 35843 7045400 7245300 8770400 5480400 5062400 4592500 4690500 6231900 4326400 6501700 455020 7207800 6905000 8745000 5623800 5323100 4769100 4596300 5961000 1 1 1 1 1 1 1 1 1 1 1 6854900 11362000 6284.3 11456000 6830900 7306500 8326200 8578100 9000500 8238600 10274000 6382600 10602000 573840 11619000 6587800 7727900 8388300 8647300 9172100 8060300 9871700 1 1 1 1 1 1 1 1 1 1 1 823140000 556260000 266870000 12266 1578 11390 65558;65559;65560 79296;79297 79296 2 LNEQASEEILKVEQK Unmodified 1756.9207 0.92069363 1478 Q01105;Q01105-2;Q01105-3;Q01105-4 SET Protein SET yes no 0 0 0 1 By MS/MS 4 0 1 1 59.262 59.168 3 3.6022E-19 18582 20211116_3442_TMUAki_TMT10x_S_F4 161.32 142.86 7262200 13029000 225330 13730000 5805200 6835500 5406500 11245000 12006000 11627000 11535000 6763500 12160000 791680 13854000 5569900 7487900 5709200 11222000 11909000 11340000 11142000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7262200 13029000 225330 13730000 5805200 6835500 5406500 11245000 12006000 11627000 11535000 6763500 12160000 791680 13854000 5569900 7487900 5709200 11222000 11909000 11340000 11142000 2 2 2 2 2 2 2 2 2 2 2 586380000 0 586380000 12267 1478 11391 65561 79298;79299 79298 2 LNEQEGVPSVFNPPPSRPLQVNTADHR Unmodified 2997.5057 0.50568088 2426 Q96CS3 FAF2 FAS-associated factor 2 yes yes 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 52.061 52.418 4 2.8608E-12 14447 20211116_3434_TMUAki_TMT10x_P_F6 106.63 92.324 5743200 10394000 36400 10110000 8122600 9890000 7055600 8242100 8244200 7281300 8234200 5347700 9697400 336540 10331000 7763700 10052000 7249400 8434400 8334700 7150900 7943600 5 5 3 5 5 5 5 5 5 5 5 3311300 5885500 36400 5939900 5316600 7297100 4871200 4363000 4453500 4077200 4480300 3083400 5492000 336540 6076100 5088800 7284100 4951400 4575500 4549900 3993800 4321200 3 3 3 3 3 3 3 3 3 3 3 2431800 4508300 0 4170400 2806000 2593000 2184400 3879100 3790700 3204100 3753900 2264300 4205400 0 4254800 2674900 2767700 2298000 3858900 3784800 3157100 3622400 2 2 0 2 2 2 2 2 2 2 2 2716800000 1578000000 1138800000 12268 2426 11392 65562;65563;65564;65565 79300;79301;79302;79303;79304 79301 5 LNFELTDALK Unmodified 1162.6234 0.6233894 789 P23786 CPT2 Carnitine O-palmitoyltransferase 2, mitochondrial yes yes 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 74.447 74.458 2 0.0028969 23555 20211116_3444_TMUAki_TMT10x_S_F5 80.834 49.462 3181000 5450100 48760 5504900 4118500 3702200 3649000 4298800 4581200 4346300 4400300 2962200 5085800 322300 5585100 3940100 3896100 3754700 4342000 4613300 4242900 4250400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3181000 5450100 48760 5504900 4118500 3702200 3649000 4298800 4581200 4346300 4400300 2962200 5085800 322300 5585100 3940100 3896100 3754700 4342000 4613300 4242900 4250400 1 1 1 1 1 1 1 1 1 1 1 177420000 0 177420000 12269 789 11393 65566;65567 79305;79306 79305 2 LNFGDDIPSALR Unmodified 1316.6725 0.67246486 3189 Q9UNE7;Q9UNE7-2 STUB1 E3 ubiquitin-protein ligase CHIP yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 68.709 68.764 2 0.00033429 22310 20211116_3433_TMUAki_TMT10x_P_F5 91.043 68.912 9301300 15129000 134920 15844000 10920000 13438000 11073000 9524500 9384100 9790100 11804000 8661400 14120000 913550 16077000 10482000 13750000 11171000 9889300 9706500 9550600 11312000 2 2 1 2 2 2 2 2 2 2 2 5541000 8222900 0 8891400 5892600 9540800 6877600 5210500 5280400 5441600 6701600 5159200 7675400 458310 9033200 5674500 9582200 6875300 5523200 5492200 5305000 6420800 1 1 0 1 1 1 1 1 1 1 1 3760300 6906000 134920 6952300 5027100 3897000 4195200 4314000 4103800 4348500 5102700 3502200 6444200 455240 7043500 4807500 4167900 4296000 4366100 4214300 4245600 4891500 1 1 1 1 1 1 1 1 1 1 1 602980000 243450000 359540000 12270 3189 11394 65568;65569 79307;79308 79307 2 LNFSHGTHEYHAETIK Unmodified 1882.8962 0.89621022 670;671 P14618;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 By MS/MS By MS/MS 4.71 0.452 2 5 5 2 34.649 34.686 3;4;5 3.8608E-36 8533 20211116_3433_TMUAki_TMT10x_P_F5 214.52 176.15 8506000 10082000 115260 16886000 34178000 19724000 9366900 10163000 10436000 10412000 10306000 7920600 9432700 1145300 16788000 32153000 19704000 10832000 10823000 10565000 10159000 9945800 10 10 8 10 10 10 10 10 10 10 10 7361300 8602100 107810 14400000 33069000 18904000 8504500 8738900 8970700 8944600 8553500 6854900 8048400 1070800 14348000 31097000 18752000 9925400 9404300 9091000 8727300 8264200 7 7 7 7 7 7 7 7 7 7 7 1144800 1479600 7455 2485800 1108700 819860 862390 1423700 1465200 1467700 1752400 1065700 1384400 74439 2440000 1055600 951550 906300 1418400 1474400 1431600 1681600 3 3 1 3 3 3 3 3 3 3 3 1907100000 1607400000 299660000 12271 670;671 11395 65570;65571;65572;65573;65574;65575;65576 79309;79310;79311;79312;79313;79314;79315;79316;79317;79318 79315 10 LNFSTPTSTNIVSVCR Unmodified 1794.8934 0.89343302 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 2 4 4 5 5 61.774 61.501 2;3 4.5627E-69 21783 20211116_3441_TMUAki_TMT10x_S_F3 302.35 270.51 50311000 79988000 573310 83324000 59079000 72367000 52141000 56909000 56554000 58421000 64540000 46846000 74649000 4454900 84605000 56484000 74051000 53388000 58686000 57624000 56995000 62012000 16 16 10 16 16 16 16 16 16 16 16 24055000 36713000 166810 39612000 33539000 47625000 28787000 24976000 24343000 25665000 28657000 22398000 34268000 2126700 40326000 32039000 47514000 29311000 26558000 25112000 25037000 27511000 8 8 5 8 8 8 8 8 8 8 8 26256000 43275000 406500 43712000 25540000 24742000 23354000 31933000 32211000 32757000 35883000 24448000 40382000 2328200 44279000 24445000 26537000 24078000 32129000 32512000 31958000 34501000 8 8 5 8 8 8 8 8 8 8 8 9952300000 5495700000 4456700000 12272 157 11396 65577;65578;65579;65580;65581;65582;65583;65584;65585;65586 79319;79320;79321;79322;79323;79324;79325;79326;79327;79328;79329;79330;79331;79332;79333;79334 79334 16 LNGFQLENFTLK Unmodified 1422.7507 0.75071518 86 O00425 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 77.732 77.711 2;3 4.348E-12 25545 20211116_3440_TMUAki_TMT10x_S_F2 140.49 115.71 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12273 86 11397 65587;65588;65589 79335;79336;79337 79337 3 LNGHQLENHALK Unmodified 1372.7211 0.72114638 3032 Q9NZI8 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 0 0 0 0 By MS/MS 5 0 1 1 32.966 32.911 4 8.8369E-05 7877 20211116_3433_TMUAki_TMT10x_P_F5 96.067 74.51 1364800 1929000 56676 1821100 2678900 2374900 1474200 1114500 1506500 1111000 1727000 1271200 1799600 184370 1873800 2541800 2356900 1559300 1196700 1539000 1085200 1659100 1 1 1 1 1 1 1 1 1 1 1 1364800 1929000 56676 1821100 2678900 2374900 1474200 1114500 1506500 1111000 1727000 1271200 1799600 184370 1873800 2541800 2356900 1559300 1196700 1539000 1085200 1659100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 116730000 116730000 0 12274 3032 11398 65590 79338 79338 1 LNGPQDHSHLLYSTIPR Unmodified 1946.9963 0.99625861 284 O60716;O60716-3;O60716-2;O60716-6;O60716-5;O60716-7;O60716-9;O60716-8;O60716-10;O60716-12;O60716-14;O60716-11;O60716-13;O60716-16;O60716-15;O60716-4 CTNND1 Catenin delta-1 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 42.579 42.819 4 8.2898E-11 11147 20211116_3436_TMUAki_TMT10x_P_F8 124.68 115.16 1621800 2515300 15179 2591900 2552600 2363100 1739400 1947000 2050600 1737100 2284200 1510200 2347400 161640 2635300 2428000 2412100 1816500 1994300 2080800 1705200 2196300 2 2 2 2 2 2 2 2 2 2 2 919730 1469600 14852 1482700 1859300 1864900 1142900 1017800 1085600 938170 1280300 856470 1371400 103250 1517400 1765700 1857200 1194900 1075200 1113800 919550 1229000 1 1 1 1 1 1 1 1 1 1 1 702070 1045700 326.66 1109100 693260 498200 596510 929190 965010 798960 1004000 653690 976010 58387 1117900 662320 554900 621530 919080 966990 785670 967270 1 1 1 1 1 1 1 1 1 1 1 437190000 260340000 176850000 12275 284 11399 65591;65592;65593 79339;79340 79339 2 LNGQVLVFTLPLTDQVSVIK Unmodified 2183.2566 0.25655562 1810 Q15459;Q15459-2 SF3A1 Splicing factor 3A subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS 3 0.756 2 3 2 4 3 80.818 80.791 3;4 2.7716E-09 29525 20211116_3441_TMUAki_TMT10x_S_F3 113.49 94.893 32083000 44760000 326220 44274000 29681000 41669000 36016000 22592000 23876000 27116000 31238000 29875000 41764000 2917500 45162000 28638000 42181000 35826000 24068000 25083000 26296000 29906000 6 6 4 6 6 6 6 6 6 6 6 21163000 28234000 221040 28716000 17545000 31275000 22449000 15842000 16630000 17702000 20361000 19706000 26347000 1897100 29299000 16959000 31356000 22334000 16942000 17305000 17212000 19526000 4 4 2 4 4 4 4 4 4 4 4 10920000 16527000 105170 15558000 12136000 10394000 13567000 6749800 7246800 9414100 10877000 10168000 15418000 1020400 15863000 11679000 10825000 13492000 7126400 7777800 9084500 10380000 2 2 2 2 2 2 2 2 2 2 2 9849100000 5454200000 4394800000 12276 1810 11400 65594;65595;65596;65597;65598;65599;65600 79341;79342;79343;79344;79345;79346 79346 6 LNGTDPEDVIR Unmodified 1227.6095 0.60953025 145 O14950;P19105;P24844 MYL12B;MYL12A;MYL9 Myosin regulatory light chain 12B;Myosin regulatory light chain 12A;Myosin regulatory light polypeptide 9 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 47.57 47.35 2 5.885E-11 14918 20211116_3430_TMUAki_TMT10x_P_F3 166.86 128.07 3277600 5077400 41467 6733600 7157500 6136300 3794900 4115000 4947100 3495700 4732100 3052100 4743900 360900 6743500 6780600 6242700 4060900 4267400 4974800 3439600 4571600 3 3 2 3 3 3 3 3 3 3 3 2313700 3486500 10511 4549200 6299000 5460900 3004700 2782000 3439000 2378400 3161000 2154300 3257200 253610 4579500 5957400 5446800 3233500 2951600 3469700 2339500 3057900 2 2 1 2 2 2 2 2 2 2 2 963940 1590900 30956 2184400 858440 675380 790230 1333100 1508100 1117400 1571100 897750 1486700 107290 2164000 823280 795890 827350 1315700 1505000 1100200 1513600 1 1 1 1 1 1 1 1 1 1 1 383800000 310980000 72827000 12277 145 11401 65601;65602;65603 79347;79348;79349 79348 3 LNGTLREDDNR Unmodified 1301.6324 0.63239096 1819;1820 Q15637;Q15637-6;Q15637-4;Q15637-2;Q15637-3;Q15637-7;Q15637-5 SF1 Splicing factor 1 no no 0 0 0 1 By MS/MS 3 0 1 1 30.552 30.295 3 0.00018045 9190 20211116_3441_TMUAki_TMT10x_S_F3 93.772 49.16 417070 671500 7562.3 625300 427930 378020 475340 326400 377990 327530 544340 388390 626410 41778 637480 411970 399200 476660 334500 394700 319840 519950 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 417070 671500 7562.3 625300 427930 378020 475340 326400 377990 327530 544340 388390 626410 41778 637480 411970 399200 476660 334500 394700 319840 519950 1 1 1 1 1 1 1 1 1 1 1 26389000 0 26389000 12278 1819;1820 11402 65604 79350 79350 1 LNHIFRPQIER Unmodified 1421.7892 0.78916637 2498 Q96IK1 BOD1 Biorientation of chromosomes in cell division protein 1 yes yes 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 39.222 39.123 4 0.00012266 12660 20211116_3441_TMUAki_TMT10x_S_F3 97.779 60.057 482380 855810 3262 933340 425610 481970 492210 586220 576210 576730 672630 449160 798850 40960 939930 409880 521180 498390 590490 585940 563660 645870 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482380 855810 3262 933340 425610 481970 492210 586220 576210 576730 672630 449160 798850 40960 939930 409880 521180 498390 590490 585940 563660 645870 2 2 1 2 2 2 2 2 2 2 2 42406000 0 42406000 12279 2498 11403 65605;65606 79351;79352 79351 2 LNHPVTHVDQSSDNIIIETLNHEHYECK Unmodified 3341.5735 0.57350245 757 P21397;P21397-2 MAOA Amine oxidase [flavin-containing] A yes no 0 0 0 0 By MS/MS By MS/MS 4.88 0.781 3 3 2 4 4 52.443 52.593 5;6 6.0434E-42 14906 20211116_3445_TMUAki_TMT10x_S_F6 181.33 170.43 33102000 51764000 879170 61988000 50313000 58561000 34371000 41790000 36973000 40463000 43821000 30827000 48339000 3407400 62465000 47894000 59492000 35778000 43296000 37743000 39573000 42061000 10 10 8 10 10 10 10 10 10 10 10 19805000 29154000 409550 36556000 36236000 45897000 22959000 24382000 21241000 23510000 24749000 18443000 27231000 1856400 36910000 34434000 45697000 23929000 25849000 21809000 22997000 23765000 5 5 3 5 5 5 5 5 5 5 5 13297000 22610000 469620 25432000 14077000 12663000 11412000 17409000 15732000 16954000 19073000 12384000 21108000 1551000 25555000 13459000 13795000 11849000 17447000 15934000 16576000 18295000 5 5 5 5 5 5 5 5 5 5 5 8793700000 5155600000 3638000000 12280 757 11404 65607;65608;65609;65610;65611;65612;65613;65614 79353;79354;79355;79356;79357;79358;79359;79360;79361;79362 79361 10 LNHVAAGLVSPSLK Unmodified 1404.8089 0.80889876 1519 Q05519;Q05519-2 SRSF11 Serine/arginine-rich splicing factor 11 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 52.166 51.938 3 4.6978E-19 16359 20211116_3429_TMUAki_TMT10x_P_F2 164.92 137.8 9571000 15849000 78272 17555000 13919000 15759000 10808000 13136000 12754000 12057000 13578000 8912000 14795000 907110 17762000 13271000 16106000 11186000 13456000 12919000 11820000 13073000 4 4 3 4 4 4 4 4 4 4 4 4750100 7183200 1361.2 8108000 9131800 11276000 6583200 6228700 6174300 5422000 6467900 4422700 6706100 436220 8253500 8690600 11179000 6798200 6563500 6309600 5328600 6230200 2 2 1 2 2 2 2 2 2 2 2 4820900 8665900 76911 9447200 4787300 4483000 4224900 6907700 6580000 6635400 7110400 4489300 8089100 470890 9508300 4580800 4927600 4387800 6892700 6609800 6491700 6842800 2 2 2 2 2 2 2 2 2 2 2 1642900000 971070000 671850000 12281 1519 11405 65615;65616;65617;65618 79363;79364;79365;79366 79363 4 LNIDSIIQR Unmodified 1070.6084 0.60840804 957 P36873;P36873-2 PPP1CC Serine/threonine-protein phosphatase PP1-gamma catalytic subunit yes no 0 0 0 0 By MS/MS 7 0 1 1 61.335 61.828 2 0.00090406 20683 20211116_3446_TMUAki_TMT10x_S_F7 108.57 54.86 5113300 8820900 16342 10734000 4959700 4523500 4976900 5377500 5082600 5021100 6737900 4761100 8238000 437010 10722000 4757100 5010500 5050600 5413700 5224800 4918600 6448600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5113300 8820900 16342 10734000 4959700 4523500 4976900 5377500 5082600 5021100 6737900 4761100 8238000 437010 10722000 4757100 5010500 5050600 5413700 5224800 4918600 6448600 1 1 1 1 1 1 1 1 1 1 1 376730000 0 376730000 12282 957 11406 65619 79367 79367 1 LNIGDLQVTK Unmodified 1099.6237 0.62372375 3195 Q9UNM6;Q9UNM6-2 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 0 0 0 0 By MS/MS By matching 7 0 2 1 1 62.449 63.035 2 8.7726E-05 20626 20211116_3435_TMUAki_TMT10x_P_F7 125.54 69.162 7213900 11879000 0 12521000 14589000 17283000 9080200 8886500 8636400 8483500 9518400 6716000 11087000 598780 12800000 13844000 17124000 9484800 9446800 8836800 8302000 9154700 1 1 0 1 1 1 1 1 1 1 1 7213900 11879000 0 12521000 14589000 17283000 9080200 8886500 8636400 8483500 9518400 6716000 11087000 598780 12800000 13844000 17124000 9484800 9446800 8836800 8302000 9154700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 979690000 733250000 246440000 12283 3195 11407 65620;65621 79368 79368 1 LNIISNLDCVNEVIGIR Unmodified 1941.0353 0.035346234 869;870 P30153;P30154;P30154-2;P30154-4;P30154-5;P30154-3 PPP2R1A;PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform no no 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 79.775 79.764 2;3 9.3592E-08 26214 20211116_3428_TMUAki_TMT10x_P_F1 109.04 93.099 8073100 12451000 0 13051000 7288700 9960300 9267500 4764800 4861600 5358100 8538300 7516500 11620000 615690 13226000 7035700 10221000 9160600 5124500 5269100 5208600 8122700 3 3 0 3 3 3 3 3 3 3 3 6226900 9491400 0 9615600 5236500 7939900 7083100 3258000 3437400 3633000 6176900 5797600 8856900 465690 9775700 5065000 8086800 6975300 3560000 3753700 3532700 5873800 2 2 0 2 2 2 2 2 2 2 2 1846200 2959600 0 3435300 2052200 2020400 2184400 1506800 1424300 1725100 2361400 1719000 2763400 150000 3449800 1970700 2134000 2185300 1564400 1515500 1675900 2248900 1 1 0 1 1 1 1 1 1 1 1 2530500000 1703800000 826700000 12284 869;870 11408 65622;65623;65624 79369;79370;79371 79369 3 LNILDTLSK Unmodified 1015.5914 0.59136099 1609 Q13200;Q13200-3;Q13200-2 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 72.59 72.699 2 6.1896E-06 25175 20211116_3446_TMUAki_TMT10x_S_F7 166.07 99.72 35289000 58750000 432880 61635000 43956000 56504000 40419000 39162000 40856000 38051000 47501000 32860000 54831000 3376500 62597000 42080000 57489000 41197000 40659000 41780000 37208000 45617000 6 6 4 6 6 6 6 6 6 6 6 20913000 33225000 395600 35022000 29941000 43228000 26630000 22782000 23997000 21808000 27936000 19475000 31010000 2190700 35724000 28647000 43072000 27104000 24166000 24668000 21339000 26827000 4 4 3 4 4 4 4 4 4 4 4 14376000 25525000 37271 26613000 14015000 13275000 13789000 16380000 16859000 16243000 19565000 13385000 23821000 1185800 26873000 13433000 14417000 14094000 16493000 17113000 15869000 18790000 2 2 1 2 2 2 2 2 2 2 2 3298400000 2098200000 1200200000 12285 1609 11409 65625;65626;65627;65628 79372;79373;79374;79375;79376;79377 79376 6 LNIPVSQVNPR Unmodified 1235.6986 0.69862003 497 P05023;P05023-3;P05023-4;P13637;P13637-2;P13637-3 ATP1A1;ATP1A3 Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 3 2 1 48.824 48.572 2;3 4.7475E-15 13513 20211116_3428_TMUAki_TMT10x_P_F1 174.98 110.72 463400 743450 0 850020 400080 333770 354510 677650 667030 544250 666470 431410 694110 29139 851910 381930 379590 371650 667640 664890 537040 642940 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 463400 743450 0 850020 400080 333770 354510 677650 667030 544250 666470 431410 694110 29139 851910 381930 379590 371650 667640 664890 537040 642940 1 1 0 1 1 1 1 1 1 1 1 261220000 0 261220000 12286 497 11410 65629;65630;65631 79378;79379;79380 79378 3 LNIQPSEADYAVDIR Unmodified 1702.8526 0.85261407 3025 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 62.804 62.442 2 7.5295E-29 22203 20211116_3441_TMUAki_TMT10x_S_F3 183.96 142.56 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12287 3025 11411 65632;65633 79381;79382 79382 2 LNISFPATGCQK Unmodified 1334.6653 0.66527099 1365 P62753 RPS6 40S ribosomal protein S6 yes yes 0 0 0 0 By MS/MS By MS/MS 3 2.71 3 4 2 5 4 59.969 59.786 2;3 7.4618E-20 19560 20211116_3429_TMUAki_TMT10x_P_F2 234.3 177.57 50500000 83081000 336180 96634000 74433000 78746000 49438000 59058000 57513000 52982000 69266000 47021000 77574000 4613300 97358000 70747000 80883000 51704000 60858000 58573000 51996000 66455000 9 9 4 9 9 9 9 9 9 9 9 28421000 44616000 134020 50449000 59382000 64807000 36698000 32231000 30564000 27640000 38380000 26462000 41653000 2739400 51269000 56365000 64404000 38221000 34277000 31639000 27184000 36781000 6 6 2 6 6 6 6 6 6 6 6 22080000 38465000 202160 46184000 15051000 13939000 12740000 26827000 26949000 25342000 30887000 20559000 35921000 1874000 46088000 14382000 16479000 13483000 26581000 26934000 24812000 29673000 3 3 2 3 3 3 3 3 3 3 3 7909300000 5453300000 2456000000 12288 1365 11412 65634;65635;65636;65637;65638;65639;65640;65641;65642 79383;79384;79385;79386;79387;79388;79389;79390;79391;79392;79393 79387 11 LNKHEENLK Unmodified 1123.5986 0.59857163 1020 P42766 RPL35 60S ribosomal protein L35 yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 31.461 31.444 4 0.025499 7265 20211116_3433_TMUAki_TMT10x_P_F5 57.785 29.871 736590 1176600 14181 990110 1061300 1285300 868530 613940 727080 655290 916990 685950 1097200 78832 1027700 1013600 1276100 886690 659330 752610 638290 878710 1 1 1 1 1 1 1 1 1 1 1 736590 1176600 14181 990110 1061300 1285300 868530 613940 727080 655290 916990 685950 1097200 78832 1027700 1013600 1276100 886690 659330 752610 638290 878710 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 44521000 44521000 0 12289 1020 11413 65643;65644 79394 79394 1 LNLAQFLNEDLS Unmodified 1375.6983 0.69834526 2619 Q9BPX3 NCAPG Condensin complex subunit 3 yes yes 0 0 0 0 By MS/MS By MS/MS 3.89 1.45 2 2 2 1 2 4 5 82.047 82.037 2 3.0194E-07 27903 20211116_3442_TMUAki_TMT10x_S_F4 133.23 109.81 11126000 18099000 83464 18583000 12468000 14847000 13564000 9367600 9415000 10241000 13886000 10360000 16890000 943250 18867000 11986000 15233000 13573000 9827000 9918400 9965700 13257000 9 9 5 9 9 9 9 9 9 9 9 4996100 7888400 22969 8027500 4573500 8079200 5169300 4065300 3920100 4205200 5808700 4651900 7361200 412880 8180300 4400600 8137200 5173600 4340000 4109700 4101200 5545000 3 3 2 3 3 3 3 3 3 3 3 6130100 10211000 60495 10555000 7894300 6768100 8395000 5302300 5494900 6035600 8077200 5708200 9528900 530370 10687000 7585400 7095500 8399400 5487000 5808600 5864500 7711800 6 6 3 6 6 6 6 6 6 6 6 1846500000 821860000 1024700000 12290 2619 11414 65645;65646;65647;65648;65649;65650;65651;65652;65653 79395;79396;79397;79398;79399;79400;79401;79402;79403 79400 9 LNLDSIIGR Unmodified 999.57129 0.57129425 1333 P62136;P62136-2;P62136-3 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 66.166 66.639 2 0.00030914 20759 20211116_3445_TMUAki_TMT10x_S_F6 93.701 61.859 16240000 25576000 0 27614000 16283000 15929000 15100000 11640000 11304000 12945000 18005000 15119000 23873000 1141300 27852000 15570000 16852000 15261000 12091000 11904000 12589000 17162000 3 3 0 3 3 3 3 3 3 3 3 3926300 6810200 0 6694200 4026500 6750900 4404100 3019700 3073000 3718200 4649700 3655600 6354200 299100 6838200 3868500 6790000 4406300 3279400 3240400 3602600 4436600 1 1 0 1 1 1 1 1 1 1 1 12313000 18766000 0 20919000 12256000 9178200 10695000 8620800 8231200 9227100 13356000 11463000 17519000 842190 21014000 11701000 10062000 10854000 8811300 8663500 8986700 12725000 2 2 0 2 2 2 2 2 2 2 2 1604800000 889560000 715260000 12291 1333 11415 65654;65655;65656 79404;79405;79406;79407 79405 4 LNLEAINYMAADGDFK Oxidation (M) 1799.84 0.84000047 572 P09382 LGALS1 Galectin-1 yes yes 0 0 1 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 73.523 73.502 3 0.0019635 23076 20211116_3434_TMUAki_TMT10x_P_F6 65.225 53.06 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12292 572 11416 65657;65658 79408;79409 79408 540 2 LNLEHIATSSAVSK Unmodified 1468.7886 0.78855725 2541 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 49.593 50.243 3 2.769E-06 15371 20211116_3435_TMUAki_TMT10x_P_F7 104.95 61.771 7341400 10411000 32095 13299000 15015000 16401000 8675100 8698300 8033000 7996000 8896500 6835700 9725600 730880 13409000 14239000 16344000 9111200 9211600 8231000 7838300 8555400 2 2 1 2 2 2 2 2 2 2 2 7341400 10411000 32095 13299000 15015000 16401000 8675100 8698300 8033000 7996000 8896500 6835700 9725600 730880 13409000 14239000 16344000 9111200 9211600 8231000 7838300 8555400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 428230000 428230000 0 12293 2541 11417 65659;65660 79410;79411;79412 79410 3 LNLFYLANDVIQNCK Unmodified 1823.924 0.92400487 1948 Q5VT52;Q5VT52-2;Q5VT52-3;Q5VT52-5;Q5VT52-4 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 80.756 80.731 3 1.6993E-15 28532 20211116_3430_TMUAki_TMT10x_P_F3 159.52 141.6 10769000 17056000 0 16129000 11914000 16279000 13019000 8372900 7476000 9672100 11990000 10026000 15912000 592970 16522000 11442000 16397000 12977000 8950900 8008300 9392700 11427000 5 5 0 5 5 5 5 5 5 5 5 7108900 10253000 0 10156000 6883400 11849000 7684300 5198400 4810900 6196800 7593100 6618200 9567000 323140 10393000 6613500 11817000 7663700 5650900 5118700 6011000 7238600 3 3 0 3 3 3 3 3 3 3 3 3660100 6803300 0 5973500 5031100 4430000 5334900 3174600 2665100 3475300 4397000 3407500 6345100 269830 6129500 4828200 4580000 5312900 3300000 2889600 3381700 4188100 2 2 0 2 2 2 2 2 2 2 2 1891300000 886570000 1004700000 12294 1948 11418 65661;65662;65663;65664;65665;65666 79413;79414;79415;79416;79417;79418 79414 6 LNLGTVGFYR Unmodified 1138.6135 0.61349341 1246 P55786;P55786-2 NPEPPS Puromycin-sensitive aminopeptidase yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 63.434 63.121 2 2.5229E-14 19686 20211116_3440_TMUAki_TMT10x_S_F2 232.23 200.85 21945000 36857000 243400 38199000 27639000 33242000 25703000 25634000 24137000 25479000 28544000 20435000 34397000 2106500 38800000 26467000 34000000 26124000 26442000 24781000 24890000 27399000 4 4 3 4 4 4 4 4 4 4 4 11038000 18138000 198020 19586000 14991000 23251000 14702000 12637000 12104000 12312000 14284000 10279000 16930000 1155100 19934000 14378000 23222000 14848000 13375000 12505000 12038000 13712000 2 2 2 2 2 2 2 2 2 2 2 10907000 18720000 45386 18612000 12649000 9991200 11001000 12997000 12033000 13166000 14260000 10156000 17467000 951400 18866000 12088000 10778000 11277000 13068000 12275000 12852000 13688000 2 2 1 2 2 2 2 2 2 2 2 3034900000 1846200000 1188700000 12295 1246 11419 65667;65668;65669;65670 79419;79420;79421;79422 79421 4 LNLLDTCAVCHQNIQSR Unmodified 2040.9833 0.98332744 171 O15164;O15164-2 TRIM24 Transcription intermediary factor 1-alpha yes no 0 0 0 0 By MS/MS 8 0 1 1 51.194 51.281 3 3.3592E-10 14647 20211116_3436_TMUAki_TMT10x_P_F8 115.56 101.73 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12296 171 11420 65671 79423 79423 1 LNLQQSGSFQYYFLQGNEK Unmodified 2263.0909 0.090946857 933 P35573;P35573-2;P35573-3 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes no 0 0 0 0 By MS/MS 2 0 1 1 77.508 77.477 3 0.09141 25442 20211116_3440_TMUAki_TMT10x_S_F2 30.578 15.324 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12297 933 11421 65672 79424 79424 1 LNLSCIHSPVVNELMR Oxidation (M) 1896.955 0.95498742 3254 Q9Y2X3 NOP58 Nucleolar protein 58 yes yes 0 0 1 0 By MS/MS By MS/MS 8 0 2 1 1 58.108 58.179 3 0.00024096 16843 20211116_3447_TMUAki_TMT10x_S_F8 76.378 63.751 5121700 8701900 57086 7786700 5942200 9553000 6037800 8348500 7311700 7362200 7340500 4769100 8116400 469710 8034800 5702200 9596000 6158800 8519500 7383700 7230900 7080200 2 2 1 2 2 2 2 2 2 2 2 2737900 4533200 57086 4326300 3394600 7002700 3843400 4623300 4143500 3991400 3976900 2549700 4229200 289390 4468100 3269600 6915300 3884300 4801800 4196300 3924200 3841600 1 1 1 1 1 1 1 1 1 1 1 2383800 4168600 0 3460400 2547600 2550300 2194400 3725200 3168200 3370800 3363500 2219400 3887100 180320 3566600 2432600 2680600 2274500 3717600 3187400 3306700 3238600 1 1 0 1 1 1 1 1 1 1 1 3175500000 810660000 2364900000 12298 3254 11422 65673;65674 79425;79426 79426 3231 2 LNLSQVR Unmodified 828.48175 0.48175096 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.943 1 2 1 2 39.227 39.526 2 0.010173 9258 20211116_3447_TMUAki_TMT10x_S_F8 98.458 11.207 6176700 9917600 0 10030000 8043000 7712600 6338200 6386100 7186700 6093900 8008300 5750500 9254600 469240 10190000 7664700 7970200 6544500 6551100 7303200 5963700 7699800 3 3 0 3 3 3 3 3 3 3 3 2086900 3024100 0 3188500 4621400 3882300 2444100 1953800 2251700 1920800 2479100 1943000 2822400 201270 3251500 4376000 3868900 2587100 2082800 2307200 1877300 2384500 1 1 0 1 1 1 1 1 1 1 1 4089800 6893500 0 6841800 3421600 3830300 3894100 4432300 4934900 4173100 5529100 3807500 6432200 267970 6938400 3288700 4101300 3957400 4468300 4996000 4086400 5315400 2 2 0 2 2 2 2 2 2 2 2 370020000 202520000 167500000 12299 2334 11423 65675;65676;65677 79427;79428;79429;79430 79430 4 LNLVDLAGSENIGR Unmodified 1469.7838 0.78380622 1184 P52732 KIF11 Kinesin-like protein KIF11 yes yes 0 0 0 0 By MS/MS By MS/MS 5.6 0.49 2 3 2 3 69.517 69.507 2;3 1.9915E-60 21530 20211116_3444_TMUAki_TMT10x_S_F5 304.89 259.21 16566000 27879000 57750 26436000 18086000 23355000 17569000 19589000 18755000 19923000 20802000 15424000 26009000 1346900 27025000 17326000 23898000 17885000 20117000 19101000 19444000 20004000 6 6 1 6 6 6 6 6 6 6 6 7504600 12159000 57750 11820000 7893500 13962000 8703600 8845000 8394500 8602900 9025900 6987400 11344000 614030 12115000 7588100 13976000 8776500 9244000 8575900 8412000 8687400 3 3 1 3 3 3 3 3 3 3 3 9061600 15720000 0 14616000 10193000 9393000 8865700 10744000 10361000 11320000 11776000 8437000 14665000 732890 14911000 9737700 9921500 9108600 10873000 10525000 11032000 11316000 3 3 0 3 3 3 3 3 3 3 3 2255500000 1188400000 1067100000 12300 1184 11424 65678;65679;65680;65681;65682 79431;79432;79433;79434;79435;79436;79437 79434 7 LNLVEAFVEDAELR Unmodified 1616.841 0.84098675 1027 P43246;P43246-2 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 0 0 By MS/MS By MS/MS 2.38 0.857 1 4 2 1 3 5 81.821 81.809 2;3 1.3352E-13 28495 20211116_3429_TMUAki_TMT10x_P_F2 147.52 112.8 6846400 10623000 26872 10395000 6670600 10341000 7618100 5873400 6628700 7394200 8204700 6374800 9911100 525740 10620000 6420600 10438000 7647200 6242700 6842800 7158900 7866000 6 6 3 6 6 6 6 6 6 6 6 4825400 7449900 19733 7254400 4366800 7970000 5165200 4150700 4827600 5219200 5754000 4493000 6950800 356800 7425200 4208000 7989300 5187100 4444900 4958900 5053300 5522000 3 3 1 3 3 3 3 3 3 3 3 2021000 3172700 7138.6 3140400 2303800 2370900 2452900 1722600 1801100 2175000 2450800 1881800 2960400 168940 3194500 2212500 2448200 2460100 1797700 1883900 2105600 2344000 3 3 2 3 3 3 3 3 3 3 3 1458300000 862730000 595580000 12301 1027 11425 65683;65684;65685;65686;65687;65688;65689;65690 79438;79439;79440;79441;79442 79440 5 LNLVVKPLEK Unmodified 1151.7278 0.72779489 627 P11441 UBL4A Ubiquitin-like protein 4A yes yes 0 0 0 1 By MS/MS 2 0 1 1 59.941 59.709 3 0.0017417 18284 20211116_3440_TMUAki_TMT10x_S_F2 74.611 51.592 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12302 627 11426 65691 79443 79443 1 LNNLVLFDK Unmodified 1074.6073 0.6073454 1372 P62851 RPS25 40S ribosomal protein S25 yes yes 0 0 0 0 By MS/MS By MS/MS 5.6 2.87 2 1 1 2 4 4 6 72.735 72.762 2;3 5.3344E-06 22847 20211116_3447_TMUAki_TMT10x_S_F8 183.47 119.99 115090000 170900000 1745100 207600000 105330000 130150000 97084000 69245000 72857000 78122000 112680000 107170000 159610000 10900000 208030000 100890000 135990000 98158000 73743000 76593000 75932000 107460000 11 11 10 11 11 11 11 11 11 11 11 69704000 102650000 1400800 121750000 68871000 101320000 61912000 41464000 43664000 47294000 68330000 64912000 95851000 7072800 122550000 65946000 103140000 62599000 45353000 46095000 45949000 65152000 6 6 6 6 6 6 6 6 6 6 6 45382000 68255000 344280 85852000 36459000 28823000 35172000 27781000 29193000 30828000 44347000 42256000 63755000 3827300 85487000 34939000 32857000 35559000 28390000 30498000 29983000 42311000 5 5 4 5 5 5 5 5 5 5 5 16254000000 8530000000 7724300000 12303 1372 11427 65692;65693;65694;65695;65696;65697;65698;65699;65700;65701 79444;79445;79446;79447;79448;79449;79450;79451;79452;79453;79454;79455;79456 79454 13 LNNMNKYDYVLTGYTR Oxidation (M) 1979.9411 0.9411115 109 O00764 PDXK Pyridoxal kinase yes yes 0 0 1 1 By MS/MS 2 0 1 1 54.619 54.37 3 0.0078958 17384 20211116_3429_TMUAki_TMT10x_P_F2 57.499 48.449 2235100 3802500 0 3569300 3317400 6306000 3120300 3877600 4561100 4106500 3370400 2080200 3547300 86567 3698600 3168600 6200800 3220000 4071900 4534800 4001200 3288100 1 1 0 1 1 1 1 1 1 1 1 2235100 3802500 0 3569300 3317400 6306000 3120300 3877600 4561100 4106500 3370400 2080200 3547300 86567 3698600 3168600 6200800 3220000 4071900 4534800 4001200 3288100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 353210000 353210000 0 12304 109 11428 65702 79457 79457 88 1 LNNPGSTVFTEDCNILLK Unmodified 2034.0092 0.0091910629 811 P26358;P26358-2;P26358-3 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 0 0 0 0 By MS/MS 6 0 1 1 76.138 76.093 2 2.0416E-06 24520 20211116_3445_TMUAki_TMT10x_S_F6 90.376 72.71 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12305 811 11429 65703 79458 79458 1 LNPADAPNPVVFVATK Unmodified 1651.8934 0.89335667 384 O94776;O94776-2 MTA2 Metastasis-associated protein MTA2 yes no 0 0 0 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 2 2 73.895 73.918 2;3 2.0644E-46 23858 20211116_3436_TMUAki_TMT10x_P_F8 238.88 207.8 15079000 25555000 264180 25197000 17054000 20009000 16506000 13144000 14429000 15251000 18152000 14041000 23844000 1405900 25653000 16347000 20550000 16707000 13774000 14902000 14808000 17395000 5 5 3 5 5 5 5 5 5 5 5 5800300 8834800 121230 9043100 5444000 9500700 5950600 4424700 5105300 5290000 6466800 5401200 8244600 540790 9217600 5236900 9536400 5983300 4780800 5279000 5130900 6196200 2 2 1 2 2 2 2 2 2 2 2 9278200 16721000 142950 16154000 11610000 10509000 10556000 8719600 9323900 9960800 11685000 8639400 15600000 865100 16436000 11110000 11014000 10724000 8993000 9623200 9677100 11199000 3 3 2 3 3 3 3 3 3 3 3 2612600000 828200000 1784400000 12306 384 11430 65704;65705;65706;65707 79459;79460;79461;79462;79463;79464 79460 6 LNPINTTLLK Unmodified 1125.6758 0.67575932 3110 Q9UGV2;Q9UGV2-2;Q9UGV2-3 NDRG3 Protein NDRG3 yes no 0 0 0 0 By MS/MS 2 0 1 1 63.446 63.157 2 1.2417E-10 21004 20211116_3429_TMUAki_TMT10x_P_F2 199.11 127.89 2961000 4817400 40013 4928000 4997900 6555600 3558100 4233000 3832700 3382300 4091100 2757200 4495500 311300 5043900 4758500 6525800 3692900 4395600 3896300 3338400 3938600 1 1 1 1 1 1 1 1 1 1 1 2961000 4817400 40013 4928000 4997900 6555600 3558100 4233000 3832700 3382300 4091100 2757200 4495500 311300 5043900 4758500 6525800 3692900 4395600 3896300 3338400 3938600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 345860000 345860000 0 12307 3110 11431 65708 79465 79465 1 LNPQEYLTSTACR Unmodified 1551.7351 0.73514147 2379;2263 Q8TAQ2;Q8TAQ2-2;Q8TAQ2-3;Q92922 SMARCC2;SMARCC1 SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1 no no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 54.787 55.408 2 8.7044E-22 17480 20211116_3435_TMUAki_TMT10x_P_F7 172.11 125.96 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12308 2263;2379 11432 65709;65710 79466;79467 79466 2 LNPQEYLTSTACRR Unmodified 1707.8363 0.8362525 2379;2263 Q8TAQ2;Q8TAQ2-2;Q8TAQ2-3;Q92922 SMARCC2;SMARCC1 SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1 no no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 46.592 46.448 3 2.4277E-23 12798 20211116_3440_TMUAki_TMT10x_S_F2 183.41 124.74 9107700 16097000 96030 19477000 19523000 19952000 11583000 17731000 16922000 13921000 14629000 8480500 15032000 940510 19638000 18522000 20247000 12330000 18025000 16900000 13753000 14183000 7 7 3 7 7 7 7 7 7 7 7 5802200 10374000 80900 12202000 16739000 17870000 9661700 11881000 11426000 9469800 9593900 5402700 9686700 671590 12404000 15875000 17721000 10225000 12310000 11482000 9348000 9311600 4 4 1 4 4 4 4 4 4 4 4 3305500 5722700 15130 7274900 2783400 2082000 1921700 5849900 5496200 4450800 5034800 3077800 5345700 268920 7234300 2647300 2526000 2105000 5715800 5418700 4404500 4871200 3 3 2 3 3 3 3 3 3 3 3 1039300000 708530000 330800000 12309 2263;2379 11433 65711;65712;65713;65714 79468;79469;79470;79471;79472;79473;79474 79474 7 LNPTWNHPDQDTEAGFKR Unmodified 2124.9977 0.99771517 2854 Q9HB07 C12orf10 UPF0160 protein MYG1, mitochondrial yes yes 0 0 0 1 By MS/MS 6 0.816 1 1 1 3 42.896 43.108 4 2.4658E-17 10643 20211116_3434_TMUAki_TMT10x_P_F6 145.43 132.39 1490600 2130900 0 3217300 4942500 3771100 2918800 1578800 1789000 1484800 1990600 1387600 1992400 135920 3213700 4685900 3758300 3031500 1713000 1876600 1454000 1914000 1 1 0 1 1 1 1 1 1 1 1 1490600 2130900 0 3217300 4942500 3771100 2918800 1578800 1789000 1484800 1990600 1387600 1992400 135920 3213700 4685900 3758300 3031500 1713000 1876600 1454000 1914000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 772700000 772700000 0 12310 2854 11434 65715;65716;65717 79475 79475 1 LNQENEHIYNLWCSGR Unmodified 2031.9221 0.92210739 2402 Q96A33;Q96A33-2 CCDC47 Coiled-coil domain-containing protein 47 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 54.634 54.739 3 9.3607E-08 15761 20211116_3445_TMUAki_TMT10x_S_F6 114.52 101.8 1565300 2883600 40306 3001700 1566800 1278800 1405600 1791900 1884800 1829100 2195000 1457800 2691200 167360 3028200 1500700 1420500 1449000 1797100 1907500 1784900 2107900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1565300 2883600 40306 3001700 1566800 1278800 1405600 1791900 1884800 1829100 2195000 1457800 2691200 167360 3028200 1500700 1420500 1449000 1797100 1907500 1784900 2107900 1 1 1 1 1 1 1 1 1 1 1 672950000 0 672950000 12311 2402 11435 65718;65719 79476;79477 79477 2 LNQLKPGLQYK Unmodified 1300.7503 0.75032125 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 1 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 50.56 50.45 3 2.3596E-14 16216 20211116_3430_TMUAki_TMT10x_P_F3 149.23 110.83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12312 1576 11436 65720;65721;65722 79478;79479;79480 79478 3 LNQSPSLAPVKR Unmodified 1308.7514 0.75138388 2792 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein yes yes 0 0 0 1 By matching By MS/MS 2.5 0.5 1 1 1 1 38.294 38.041 3 0.060584 12231 20211116_3441_TMUAki_TMT10x_S_F3 41.87 20.422 506910 856320 0 918570 568260 383430 414970 698360 643070 588110 725860 471970 799270 41100 924690 540910 430700 435990 690850 647160 578920 697650 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 506910 856320 0 918570 568260 383430 414970 698360 643070 588110 725860 471970 799270 41100 924690 540910 430700 435990 690850 647160 578920 697650 1 1 0 1 1 1 1 1 1 1 1 32353000 13756000 18596000 12313 2792 11437 65723;65724 79481 79481 1 LNQSQREELGLIEQAYDNPHEALSR Unmodified 2909.4268 0.42676186 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 1 By MS/MS By MS/MS 2.75 1.39 2 2 1 2 1 3 5 62.681 62.533 4 1.4756E-87 22257 20211116_3441_TMUAki_TMT10x_S_F3 273.45 262.74 23556000 42231000 495650 38025000 31228000 37405000 28190000 34176000 30505000 31135000 34504000 21936000 39390000 2452900 39080000 29892000 38072000 28825000 34820000 31075000 30533000 33161000 12 12 10 12 12 12 12 12 12 12 12 8117700 13604000 136470 13114000 10067000 19153000 10457000 13356000 11714000 11722000 13084000 7559400 12692000 827500 13504000 9671100 19009000 10626000 13823000 11911000 11515000 12579000 3 3 3 3 3 3 3 3 3 3 3 15438000 28626000 359180 24911000 21161000 18253000 17733000 20821000 18791000 19413000 21420000 14377000 26698000 1625400 25576000 20221000 19063000 18199000 20997000 19164000 19018000 20581000 9 9 7 9 9 9 9 9 9 9 9 11186000000 4533300000 6653100000 12314 1997 11438 65725;65726;65727;65728;65729;65730;65731;65732 79482;79483;79484;79485;79486;79487;79488;79489;79490;79491;79492;79493 79488 12 LNQTALQAVTPITSFGK Unmodified 1787.9781 0.97814893 2243 Q8NEU8;Q8NEU8-2;Q8NEU8-3 APPL2 DCC-interacting protein 13-beta yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 75.295 75.132 3 4.7673E-11 26333 20211116_3430_TMUAki_TMT10x_P_F3 129.32 108.66 7587500 12306000 34316 10999000 7424300 12112000 8377200 7510500 6453500 7419500 9024600 7064700 11478000 629530 11329000 7142900 12167000 8388000 7865700 6740700 7250000 8626100 3 3 1 3 3 3 3 3 3 3 3 4908600 7667800 34316 6933700 4340300 9219100 5627400 5037600 4516600 5122500 5891100 4570500 7152100 417490 7159500 4195200 9156800 5606400 5335500 4692300 4999400 5640300 2 2 1 2 2 2 2 2 2 2 2 2678900 4638600 0 4064900 3084000 2893100 2749800 2472900 1936900 2297000 3133600 2494200 4326100 212040 4169800 2947700 3010100 2781500 2530200 2048500 2250600 2985800 1 1 0 1 1 1 1 1 1 1 1 793530000 331230000 462310000 12315 2243 11439 65733;65734 79494;79495;79496 79495 3 LNQVCATHQHFESR Unmodified 1725.8005 0.80053569 245 O43795;O43795-2 MYO1B Unconventional myosin-Ib yes no 0 0 0 0 By MS/MS 5 0 1 1 30.61 30.545 3 0.061326 6908 20211116_3433_TMUAki_TMT10x_P_F5 40.187 31.233 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12316 245 11440 65735 79497 79497 1 LNQVIFPVSYNDK Unmodified 1535.7984 0.79839365 2762 Q9GZZ1;Q9GZZ1-2 NAA50 N-alpha-acetyltransferase 50 yes no 0 0 0 0 By MS/MS 8 0 1 1 70.502 70.584 3 9.1276E-05 22524 20211116_3436_TMUAki_TMT10x_P_F8 92.039 67.247 3863100 6124700 82639 5677100 4634800 8561700 5036200 5265700 4893000 5069300 5104700 3597500 5713400 408100 5866300 4459100 8470100 5083000 5514300 4991600 4959100 4917800 1 1 1 1 1 1 1 1 1 1 1 3863100 6124700 82639 5677100 4634800 8561700 5036200 5265700 4893000 5069300 5104700 3597500 5713400 408100 5866300 4459100 8470100 5083000 5514300 4991600 4959100 4917800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 528640000 528640000 0 12317 2762 11441 65736 79498 79498 1 LNRLPAAGVGDMVMATVK 2 Oxidation (M) 1873.9754 0.97538851 1369 P62829 RPL23 60S ribosomal protein L23 yes yes 0 0 2 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 49.544 49.477 3 8.0578E-12 13785 20211116_3428_TMUAki_TMT10x_P_F1 128.74 111.66 10582000 17655000 124380 16651000 15303000 23918000 11581000 26322000 29829000 22949000 18502000 9853800 16471000 1019800 17166000 14585000 23972000 12507000 26541000 29146000 22552000 18199000 5 5 2 5 5 5 5 5 5 5 5 5601600 9324600 76117 8404500 11020000 18677000 7881300 13608000 15485000 12085000 9589800 5216200 8697400 606070 8792600 10492000 18279000 8393800 14046000 15212000 11866000 9433400 2 2 1 2 2 2 2 2 2 2 2 4980700 8330800 48264 8246200 4283000 5241600 3699700 12715000 14344000 10863000 8912200 4637600 7773200 413710 8373500 4092800 5693100 4112800 12495000 13934000 10686000 8765400 3 3 1 3 3 3 3 3 3 3 3 2052500000 1349600000 702930000 12318 1369 11442 65737;65738;65739;65740 79499;79500;79501;79502;79503 79499 1837;1838 5 LNRLPAAGVGDMVMATVK Oxidation (M) 1857.9805 0.98047389 1369 P62829 RPL23 60S ribosomal protein L23 yes yes 0 0 1 1 By MS/MS By MS/MS 2 0 3 1 2 58.472 58.235 3 6.911E-11 18968 20211116_3429_TMUAki_TMT10x_P_F2 123.08 103.5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12319 1369 11442 65741;65742;65743 79504;79505;79506 79504 1837;1838 3 LNRLPAAGVGDMVMATVK Unmodified 1841.9856 0.98555927 1369 P62829 RPL23 60S ribosomal protein L23 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0 2 1 1 68.768 68.397 3 2.0013E-08 23615 20211116_3430_TMUAki_TMT10x_P_F3 115.57 95.363 31726000 49538000 691710 54609000 31770000 23458000 32045000 13659000 9856000 14612000 29072000 29545000 46243000 3251100 54886000 30510000 25599000 31803000 14410000 11680000 14231000 27449000 3 3 2 3 3 3 3 3 3 3 3 8296800 12592000 0 12856000 8632600 10243000 10162000 4047000 2641100 3973100 7029600 7725000 11751000 668170 13057000 8314200 10457000 9994700 4425200 3171700 3883300 6645300 1 1 0 1 1 1 1 1 1 1 1 23429000 36946000 691710 41754000 23137000 13215000 21883000 9611900 7214900 10639000 22042000 21820000 34492000 2583000 41829000 22195000 15142000 21808000 9985300 8507900 10348000 20804000 2 2 2 2 2 2 2 2 2 2 2 2503700000 1240900000 1262800000 12320 1369 11442 65744;65745 79507;79508;79509 79507 3 LNRLPAAGVGDMVMATVKK 2 Oxidation (M) 2002.0704 0.070351532 1369 P62829 RPL23 60S ribosomal protein L23 yes yes 0 0 2 2 By MS/MS By MS/MS 2.6 0.49 2 3 3 2 47.344 47.192 4;5 0.00010619 14420 20211116_3429_TMUAki_TMT10x_P_F2 75.743 59.059 11768000 18358000 92557 19759000 20239000 28714000 13980000 28067000 29870000 21451000 20551000 10957000 17135000 1074100 20192000 19248000 28685000 15000000 28371000 29362000 21223000 20113000 8 8 3 8 8 8 8 8 8 8 8 9045000 13751000 92557 14750000 17106000 25737000 11716000 20512000 21780000 15902000 15043000 8421900 12835000 880410 15141000 16268000 25424000 12478000 20981000 21478000 15720000 14720000 6 6 3 6 6 6 6 6 6 6 6 2722800 4606400 0 5008600 3133000 2976700 2263600 7555300 8090500 5549600 5508000 2534900 4299700 193650 5050800 2979700 3260700 2521900 7390600 7884100 5502700 5393300 2 2 0 2 2 2 2 2 2 2 2 1156400000 887770000 268620000 12321 1369 11443 65746;65747;65748;65749;65750 79510;79511;79512;79513;79514;79515;79516;79517 79510 1837;1838 8 LNRLPAAGVGDMVMATVKK Oxidation (M) 1986.0754 0.07543691 1369 P62829 RPL23 60S ribosomal protein L23 yes yes 0 0 1 2 By MS/MS 4 0 1 1 56.729 56.873 4 0.0001645 17176 20211116_3431_TMUAki_TMT10x_P_F4 69.188 53.066 5044600 7947100 0 9017900 8858200 12155000 7789200 6056200 4463700 5113100 6365100 4696800 7419500 445730 9171000 8465100 12052000 7853800 6437000 4754000 5032600 6081300 1 1 0 1 1 1 1 1 1 1 1 5044600 7947100 0 9017900 8858200 12155000 7789200 6056200 4463700 5113100 6365100 4696800 7419500 445730 9171000 8465100 12052000 7853800 6437000 4754000 5032600 6081300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 582400000 582400000 0 12322 1369 11443 65751 79518 79518 1837;1838 1 LNRLPAAGVGDMVMATVKK Unmodified 1970.0805 0.080522287 1369 P62829 RPL23 60S ribosomal protein L23 yes yes 0 0 0 2 By MS/MS 5 0 1 1 64.25 64.388 4 8.3365E-06 20492 20211116_3433_TMUAki_TMT10x_P_F5 86.453 66.362 16161000 24751000 238410 28237000 20482000 23868000 21794000 9379300 7750600 9792700 17045000 15049000 23108000 1597600 28494000 19685000 24259000 21603000 10280000 8829200 9547000 16155000 2 2 1 2 2 2 2 2 2 2 2 16161000 24751000 238410 28237000 20482000 23868000 21794000 9379300 7750600 9792700 17045000 15049000 23108000 1597600 28494000 19685000 24259000 21603000 10280000 8829200 9547000 16155000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 877500000 877500000 0 12323 1369 11443 65752 79519;79520 79520 2 LNSLAIGLR Unmodified 955.58147 0.581465 1229 P54886;P54886-2 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 58.359 58.031 2 0.011962 19384 20211116_3430_TMUAki_TMT10x_P_F3 66.568 40.111 6360600 10365000 118690 10958000 8246000 9614700 6771300 8930100 7940800 8071600 8791200 5923200 9673400 661060 11117000 7876600 9862300 6981800 9088300 8057400 7918500 8454200 2 2 1 2 2 2 2 2 2 2 2 2935500 4605600 0 5246900 4748400 6380300 3752000 3981600 3430700 3529900 3776000 2733200 4300000 265460 5324300 4527800 6376000 3848000 4155700 3516500 3466100 3631900 1 1 0 1 1 1 1 1 1 1 1 3425200 5758900 118690 5711000 3497600 3234400 3019300 4948500 4510100 4541700 5015200 3190000 5373500 395600 5792500 3348800 3486300 3133800 4932600 4540900 4452400 4822300 1 1 1 1 1 1 1 1 1 1 1 532700000 300520000 232180000 12324 1229 11444 65753;65754 79521 79521 1 LNSNTQVVLLSATMPSDVLEVTK Unmodified 2458.2989 0.29889072 1277 P60842;P60842-2 EIF4A1 Eukaryotic initiation factor 4A-I yes no 0 0 0 0 By MS/MS By MS/MS 8 0 3 2 1 79.288 79.276 2;3 4.4255E-12 26145 20211116_3436_TMUAki_TMT10x_P_F8 110.97 81.996 2223200 3328400 31184 3926700 2743100 2234800 2877900 1549600 1536200 1877500 2683500 2070300 3108000 220660 3938300 2635500 2365600 2870600 1619900 1662200 1820200 2553100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2223200 3328400 31184 3926700 2743100 2234800 2877900 1549600 1536200 1877500 2683500 2070300 3108000 220660 3938300 2635500 2365600 2870600 1619900 1662200 1820200 2553100 1 1 1 1 1 1 1 1 1 1 1 1869400000 1185200000 684220000 12325 1277 11445 65755;65756;65757 79522;79523 79522 2 LNSNTQVVLLSATMPSDVLEVTKK Oxidation (M) 2602.3888 0.38876836 1277 P60842;P60842-2 EIF4A1 Eukaryotic initiation factor 4A-I yes no 0 0 1 1 By MS/MS By MS/MS 4.08 3.17 4 3 1 4 7 5 74.055 74.013 3;4 1.2878E-29 23696 20211116_3428_TMUAki_TMT10x_P_F1 174.19 165.68 72952000 125080000 462490 120030000 65712000 127030000 80855000 85553000 110850000 102750000 92928000 67926000 116700000 5239700 122910000 63392000 128050000 82151000 89593000 110820000 99643000 90199000 22 22 10 22 22 22 22 22 22 22 22 42619000 68913000 130010 67451000 36523000 81866000 42207000 46231000 59509000 57118000 49410000 39681000 64297000 2765500 69130000 35154000 81710000 43051000 49129000 59424000 55336000 47977000 12 12 5 12 12 12 12 12 12 12 12 30333000 56172000 332480 52580000 29189000 45168000 38648000 39322000 51339000 45633000 43517000 28245000 52401000 2474200 53783000 28238000 46340000 39100000 40464000 51395000 44307000 42222000 10 10 5 10 10 10 10 10 10 10 10 19306000000 11105000000 8200500000 12326 1277 11446 65758;65759;65760;65761;65762;65763;65764;65765;65766;65767;65768;65769 79524;79525;79526;79527;79528;79529;79530;79531;79532;79533;79534;79535;79536;79537;79538;79539;79540;79541;79542;79543;79544;79545 79524 1731 22 LNSNTQVVLLSATMPSDVLEVTKK Unmodified 2586.3939 0.39385374 1277 P60842;P60842-2 EIF4A1 Eukaryotic initiation factor 4A-I yes no 0 0 0 1 By MS/MS By MS/MS 1.57 0.495 3 4 4 3 77.799 77.768 3;4 1.91E-22 25381 20211116_3428_TMUAki_TMT10x_P_F1 151.01 138.7 33519000 54280000 183940 56354000 36240000 48398000 41617000 25364000 27802000 29573000 41384000 31207000 50657000 2581500 57225000 34869000 49278000 41505000 27076000 29370000 28709000 39501000 6 6 3 6 6 6 6 6 6 6 6 17632000 28341000 157230 29365000 16836000 28607000 19174000 13044000 14280000 14898000 20339000 16418000 26449000 1582700 29874000 16210000 28840000 19176000 14103000 14957000 14474000 19433000 3 3 2 3 3 3 3 3 3 3 3 15887000 25939000 26717 26989000 19404000 19791000 22443000 12319000 13521000 14675000 21045000 14789000 24208000 998750 27352000 18658000 20437000 22329000 12973000 14413000 14235000 20068000 3 3 1 3 3 3 3 3 3 3 3 9499700000 5855000000 3644700000 12327 1277 11446 65770;65771;65772;65773;65774;65775;65776 79546;79547;79548;79549;79550;79551 79546 6 LNSVQSSERPLFLVHPIEGSTTVFHSLASR Unmodified 3307.7313 0.73132372 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 1 By MS/MS By MS/MS 3.75 0.433 1 3 2 2 63.686 63.589 4;5 1.5185E-27 22769 20211116_3441_TMUAki_TMT10x_S_F3 158.13 144.4 30149000 55381000 215780 51306000 31953000 45506000 33449000 28149000 29545000 34313000 38307000 28070000 51662000 1978100 52541000 30668000 46326000 33729000 29681000 30539000 33258000 36682000 6 6 3 6 6 6 6 6 6 6 6 10893000 21324000 210690 16611000 10588000 22855000 10814000 10510000 8478300 11915000 12427000 10144000 19880000 1095200 17372000 10171000 22621000 10885000 11351000 8867500 11579000 11865000 2 2 2 2 2 2 2 2 2 2 2 19255000 34058000 5086.6 34695000 21365000 22651000 22635000 17639000 21067000 22398000 25880000 17926000 31782000 882890 35169000 20497000 23706000 22844000 18330000 21671000 21679000 24817000 4 4 1 4 4 4 4 4 4 4 4 8081600000 4285100000 3796500000 12328 1092 11447 65777;65778;65779;65780 79552;79553;79554;79555;79556;79557 79554 6 LNTLLQR Unmodified 856.51305 0.51305109 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 48.98 48.92 2 0.0013264 15163 20211116_3429_TMUAki_TMT10x_P_F2 138.83 44.825 11554000 17370000 122480 19866000 27518000 23307000 13687000 12255000 10720000 11312000 15086000 10759000 16217000 1261000 20141000 26043000 23283000 14514000 12989000 11190000 11087000 14418000 3 3 1 3 3 3 3 3 3 3 3 11554000 17370000 122480 19866000 27518000 23307000 13687000 12255000 10720000 11312000 15086000 10759000 16217000 1261000 20141000 26043000 23283000 14514000 12989000 11190000 11087000 14418000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1311100000 1311100000 0 12329 1474 11448 65781;65782;65783;65784;65785;65786 79558;79559;79560;79561;79562;79563 79559 6 LNTQEIFDDWAR Unmodified 1506.7103 0.71030693 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 76.475 76.383 2 0.0010741 25575 20211116_3442_TMUAki_TMT10x_S_F4 81.642 58.861 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12330 1695 11449 65787;65788 79564;79565 79565 2 LNVCVSK Unmodified 818.43202 0.43202358 677;2310 Q8WVV9;Q8WVV9-5;Q8WVV9-4;P14866;P14866-2 HNRNPLL;HNRNPL Heterogeneous nuclear ribonucleoprotein L-like;Heterogeneous nuclear ribonucleoprotein L no no 0 0 0 0 By MS/MS By MS/MS 5 2.33 2 1 2 2 2 2 3 3 7 10 43.507 43.6 2;3 0.0033474 11472 20211116_3436_TMUAki_TMT10x_P_F8 118.89 37.282 64773000 99207000 408750 114750000 74374000 106050000 66088000 68981000 74946000 67193000 78663000 60311000 92629000 5683700 115830000 71117000 107740000 67743000 71953000 75989000 65698000 75768000 14 14 8 14 14 14 14 14 14 14 14 42694000 63458000 193070 73201000 54359000 84736000 47687000 43452000 46520000 42718000 49496000 39752000 59249000 3716800 74161000 51955000 84685000 48684000 46241000 47483000 41750000 47655000 6 6 3 6 6 6 6 6 6 6 6 22079000 35749000 215670 41545000 20015000 21317000 18400000 25529000 28427000 24475000 29166000 20559000 33380000 1966900 41671000 19162000 23059000 19059000 25712000 28507000 23947000 28113000 8 8 5 8 8 8 8 8 8 8 8 7730100000 4822700000 2907400000 12331 2310;677 11450 65789;65790;65791;65792;65793;65794;65795;65796;65797;65798;65799;65800;65801;65802;65803;65804;65805 79566;79567;79568;79569;79570;79571;79572;79573;79574;79575;79576;79577;79578;79579;79580;79581 79571 16 LNVDFALIHK Unmodified 1168.6604 0.66044361 1279 P60891;P60891-2 PRPS1 Ribose-phosphate pyrophosphokinase 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 64.089 64.057 3 0.00056674 19851 20211116_3436_TMUAki_TMT10x_P_F8 88.441 57.069 6839900 11265000 38155 10329000 7018200 9897200 8033000 8315200 8849400 8686700 8932200 6368500 10508000 561460 10597000 6754400 10074000 8120400 8545300 8970000 8468600 8614000 3 3 2 3 3 3 3 3 3 3 3 2198300 3218400 27350 3127600 2565400 4357600 2718400 2402000 2544100 2607400 2501200 2047000 3002700 212890 3215500 2465300 4319400 2744000 2547000 2594300 2538100 2414200 1 1 1 1 1 1 1 1 1 1 1 4641600 8047000 10805 7201400 4452800 5539600 5314500 5913200 6305300 6079300 6431000 4321500 7505500 348580 7381500 4289100 5754300 5376400 5998200 6375700 5930500 6199900 2 2 1 2 2 2 2 2 2 2 2 1600400000 377230000 1223200000 12332 1279 11451 65806;65807;65808 79582;79583;79584 79582 3 LNVFKNDQDTWDYTNPNLSGQGDPGSNPNK Unmodified 3334.5127 0.51267634 677 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 1 By matching By MS/MS 6.33 0.471 2 1 1 2 67.058 67.152 4 9.8997E-15 22920 20211116_3446_TMUAki_TMT10x_S_F7 105.46 93.805 3343000 6558800 65205 6930600 3937200 2001600 3274500 1021000 1387600 1803100 3838600 3113100 6121500 346250 6970300 3762500 2321100 3297700 1110900 1581100 1728700 3627100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3343000 6558800 65205 6930600 3937200 2001600 3274500 1021000 1387600 1803100 3838600 3113100 6121500 346250 6970300 3762500 2321100 3297700 1110900 1581100 1728700 3627100 1 1 1 1 1 1 1 1 1 1 1 2437400000 581290000 1856100000 12333 677 11452 65809;65810;65811 79585 79585 1 LNVFKNDQDTWDYTNPNLSGQGDPGSNPNKR Unmodified 3490.6138 0.61378736 677 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 2 By MS/MS By MS/MS 7.5 0.5 2 2 1 3 51.919 52.277 4;5 1.117E-26 19470 20211116_3435_TMUAki_TMT10x_P_F7 141.78 134.21 11097000 19339000 2496.1 14649000 19176000 28302000 22974000 11186000 8931000 12345000 14687000 10331000 18028000 880540 15480000 18473000 27606000 22670000 12272000 9904500 12009000 13990000 4 4 1 4 4 4 4 4 4 4 4 8487600 14527000 2496.1 11136000 14866000 25655000 20290000 8582800 6720600 9234200 10999000 7902300 13543000 732410 11817000 14387000 24856000 19878000 9607500 7582700 8991700 10478000 2 2 1 2 2 2 2 2 2 2 2 2609000 4811400 0 3512900 4310100 2647600 2683500 2603300 2210400 3110500 3687800 2428500 4484700 148130 3662500 4085900 2749600 2792400 2664300 2321800 3016900 3511800 2 2 0 2 2 2 2 2 2 2 2 3567500000 1264500000 2303000000 12334 677 11453 65812;65813;65814;65815 79586;79587;79588;79589 79587 4 LNVTEQEKIDK Unmodified 1315.6983 0.69834526 520 P06733 ENO1 Alpha-enolase yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 42.292 42.41 3 3.2601E-08 11375 20211116_3431_TMUAki_TMT10x_P_F4 143.98 98.06 14644000 23583000 256610 19083000 24035000 29521000 19495000 17154000 20966000 15628000 20425000 13637000 21988000 1571100 19942000 22947000 29153000 20058000 18019000 21245000 15326000 19720000 6 6 5 6 6 6 6 6 6 6 6 9606400 14835000 204520 12110000 18567000 23548000 13579000 10918000 13228000 10014000 13001000 8946000 13832000 1098900 12717000 17689000 23000000 14024000 11711000 13465000 9817100 12548000 3 3 2 3 3 3 3 3 3 3 3 5037500 8748000 52087 6973200 5468200 5973100 5916000 6235400 7737300 5614300 7423800 4690800 8156200 472220 7224200 5257600 6152600 6033900 6307900 7780600 5508800 7171200 3 3 3 3 3 3 3 3 3 3 3 1443200000 1013600000 429540000 12335 520 11454 65816;65817;65818;65819;65820;65821 79590;79591;79592;79593;79594;79595 79590 6 LNVTVQDQEEHR Unmodified 1466.7114 0.71136956 2859 Q9HBU6;Q9HBU6-2 ETNK1 Ethanolamine kinase 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 33.201 32.962 3 4.8809E-06 10220 20211116_3441_TMUAki_TMT10x_S_F3 106.54 91.392 310420 481680 0 502880 274930 234980 306850 254520 266700 210860 404710 289020 449540 24264 507510 264360 256350 308340 256490 277980 207740 386130 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 310420 481680 0 502880 274930 234980 306850 254520 266700 210860 404710 289020 449540 24264 507510 264360 256350 308340 256490 277980 207740 386130 1 1 0 1 1 1 1 1 1 1 1 46242000 0 46242000 12336 2859 11455 65822 79596 79596 1 LNVVAFLNELPK Unmodified 1355.7813 0.78128702 3090 Q9UBU9 NXF1 Nuclear RNA export factor 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.4 0.49 3 2 2 3 80.555 80.538 2;3 1.8021E-16 27963 20211116_3429_TMUAki_TMT10x_P_F2 206.73 169.25 10109000 15267000 58834 16347000 11032000 15217000 12366000 8116500 7749200 9403400 11738000 9413000 14250000 878720 16583000 10614000 15412000 12331000 8649200 8227000 9130800 11199000 4 4 3 4 4 4 4 4 4 4 4 6650700 9941200 10355 10246000 6873900 11477000 7598700 5457800 5229900 6279200 7622400 6192300 9277300 536990 10449000 6608100 11480000 7596500 5877500 5509100 6098800 7279000 2 2 1 2 2 2 2 2 2 2 2 3458700 5325800 48479 6101500 4158400 3740200 4767500 2658700 2519200 3124200 4115100 3220700 4972400 341730 6134400 4005500 3931700 4734400 2771700 2717900 3032100 3920300 2 2 2 2 2 2 2 2 2 2 2 2188000000 1577100000 610870000 12337 3090 11456 65823;65824;65825;65826;65827 79597;79598;79599;79600;79601 79598 5 LNVWDIGGQR Unmodified 1156.5989 0.59890598 947 P36405 ARL3 ADP-ribosylation factor-like protein 3 yes yes 0 0 0 0 By MS/MS By matching 7.67 0.471 1 2 2 1 61.446 61.747 2 0.0011777 20091 20211116_3435_TMUAki_TMT10x_P_F7 93.667 76.74 16530000 28609000 64214 26438000 22573000 35779000 21599000 18354000 17199000 17889000 20495000 15390000 26687000 1282700 27264000 21609000 35482000 21824000 19526000 17806000 17490000 19669000 2 2 1 2 2 2 2 2 2 2 2 16530000 28609000 64214 26438000 22573000 35779000 21599000 18354000 17199000 17889000 20495000 15390000 26687000 1282700 27264000 21609000 35482000 21824000 19526000 17806000 17490000 19669000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 902010000 723970000 178040000 12338 947 11457 65828;65829;65830 79602 79602 1 LNVWDIGGQRK Unmodified 1284.6939 0.693869 947 P36405 ARL3 ADP-ribosylation factor-like protein 3 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 53.6 53.417 3 0.0024874 15683 20211116_3440_TMUAki_TMT10x_S_F2 74.611 48.952 5444500 7916200 54072 11929000 4167800 2642300 3780900 3693800 3173400 3808500 6238500 5069800 7401600 483900 11748000 3989800 3288300 3836500 3706000 3363700 3714800 5923100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5444500 7916200 54072 11929000 4167800 2642300 3780900 3693800 3173400 3808500 6238500 5069800 7401600 483900 11748000 3989800 3288300 3836500 3706000 3363700 3714800 5923100 1 1 1 1 1 1 1 1 1 1 1 111600000 0 111600000 12339 947 11458 65831;65832 79603;79604 79604 2 LNVWDLSK Unmodified 973.52328 0.52328142 1854;1553 Q16576;Q16576-2;Q09028;Q09028-3;Q09028-2;Q09028-4 RBBP7;RBBP4 Histone-binding protein RBBP7;Histone-binding protein RBBP4 no no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 67.549 67.726 2 0.0026352 21391 20211116_3436_TMUAki_TMT10x_P_F8 107.15 50.425 11735000 21138000 481470 22618000 18153000 18505000 14987000 10710000 10447000 11065000 16646000 10930000 19730000 1511500 22908000 17356000 18930000 15227000 11293000 11046000 10792000 15866000 2 2 2 2 2 2 2 2 2 2 2 5622800 10055000 194400 10671000 11312000 13178000 9365000 5305700 5110500 5578600 8071800 5236800 9384600 727020 10881000 10809000 13094000 9469500 5799900 5490300 5437100 7694900 1 1 1 1 1 1 1 1 1 1 1 6112300 11083000 287070 11947000 6841100 5326200 5622000 5404200 5336000 5486200 8574300 5693300 10345000 784500 12028000 6546300 5836100 5757500 5493100 5555900 5354700 8171100 1 1 1 1 1 1 1 1 1 1 1 1550500000 1050600000 499940000 12340 1854;1553 11459 65833;65834;65835 79605;79606 79605 2 LNYLDPR Unmodified 889.46577 0.46576654 624 P11387;Q969P6;Q969P6-2 TOP1;TOP1MT DNA topoisomerase 1;DNA topoisomerase I, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 47.376 47.542 2 0.049411 13652 20211116_3433_TMUAki_TMT10x_P_F5 69.432 35.694 8679700 13223000 37732 15343000 17807000 16673000 10452000 10963000 11134000 9630500 12399000 8081700 12347000 845290 15523000 16889000 16775000 11008000 11395000 11342000 9460600 11922000 4 4 2 4 4 4 4 4 4 4 4 6694700 10187000 19247 12122000 16145000 15189000 8688600 8847000 9066400 7819200 9929400 6233200 9513100 668010 12276000 15292000 15142000 9214700 9284300 9237600 7679000 9551800 3 3 1 3 3 3 3 3 3 3 3 1985100 3035900 18485 3221300 1662500 1484000 1763400 2116400 2067500 1811300 2469900 1848400 2833500 177280 3247200 1597800 1633200 1792800 2110800 2104300 1781600 2370200 1 1 1 1 1 1 1 1 1 1 1 319700000 169630000 150070000 12341 624 11460 65836;65837;65838 79607;79608;79609;79610 79608 4 LNYVPLEKQEEERQDGGQNESFK Unmodified 2736.2991 0.29910173 2049 Q7L014 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 0 0 0 2 By MS/MS By MS/MS 4 0 2 1 1 50.582 50.717 4 4.1809E-29 15152 20211116_3442_TMUAki_TMT10x_S_F4 179.5 163.2 6544900 11332000 115220 10915000 11223000 14074000 8177600 11003000 11908000 10718000 9902300 6094800 10572000 715520 11212000 10692000 14074000 8569600 11334000 11880000 10480000 9614400 3 3 3 3 3 3 3 3 3 3 3 4230000 7005300 101700 6801900 9176200 12367000 6922200 6765300 7808200 6678500 6118900 3939300 6535900 514750 7036600 8748000 12129000 7166800 7158600 7844800 6526100 5954900 2 2 2 2 2 2 2 2 2 2 2 2314900 4326700 13519 4112800 2047200 1707100 1255400 4237800 4099600 4039900 3783400 2155500 4036500 200770 4174900 1943900 1944300 1402800 4175100 4035000 3953700 3659500 1 1 1 1 1 1 1 1 1 1 1 909360000 555990000 353370000 12342 2049 11461 65839;65840 79611;79612;79613 79613 3 LPAAGVGDMVMATVK Unmodified 1458.7575 0.75745681 1369 P62829 RPL23 60S ribosomal protein L23 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 3 1 2 75.468 75.362 2;3 9.217E-36 24519 20211116_3436_TMUAki_TMT10x_P_F8 204.49 175.01 4480300 6987500 62885 9363100 3817100 2871900 4493000 1837300 1482100 2225500 4686300 4172100 6529000 420770 9287100 3680800 3302800 4428900 1931900 1753200 2157500 4421500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4480300 6987500 62885 9363100 3817100 2871900 4493000 1837300 1482100 2225500 4686300 4172100 6529000 420770 9287100 3680800 3302800 4428900 1931900 1753200 2157500 4421500 2 2 2 2 2 2 2 2 2 2 2 524480000 0 524480000 12343 1369 11462 65841;65842;65843 79614;79615;79616;79617 79614 4 LPAAGVGDMVMATVKK Unmodified 1586.8524 0.85241983 1369 P62829 RPL23 60S ribosomal protein L23 yes yes 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 69.711 69.34 3 3.9895E-21 25135 20211116_3441_TMUAki_TMT10x_S_F3 166.35 148.22 14839000 23905000 296570 29225000 15911000 14902000 14304000 8903200 7857100 9213800 15983000 13819000 22325000 1521700 29225000 15234000 15930000 14394000 9364200 8563700 8985900 15166000 3 3 3 3 3 3 3 3 3 3 3 5269500 8192300 26404 9643400 6661500 8987700 6387900 4437500 3716600 4355300 6145100 4906600 7649700 480980 9725600 6382100 9094300 6411200 4738900 3984100 4257000 5852800 1 1 1 1 1 1 1 1 1 1 1 9569700 15712000 270170 19582000 9249900 5914600 7916400 4465700 4140500 4858500 9837400 8912300 14676000 1040700 19499000 8852100 6835900 7982800 4625300 4579600 4728900 9313400 2 2 2 2 2 2 2 2 2 2 2 1074300000 352180000 722160000 12344 1369 11463 65844;65845;65846 79618;79619;79620;79621 79621 4 LPADTCLLEFAR Unmodified 1404.7071 0.7071358 2248 Q8NF37 LPCAT1 Lysophosphatidylcholine acyltransferase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 73.082 73.012 2 5.7819E-07 23260 20211116_3445_TMUAki_TMT10x_S_F6 125.74 97.912 8235300 13149000 126250 13032000 8657000 10093000 8856400 8266800 7205500 8074100 9708500 7668800 12269000 806330 13259000 8313400 10422000 8921900 8491400 7491400 7893600 9288000 3 3 3 3 3 3 3 3 3 3 3 2702900 3844200 13233 3914400 2249300 4784800 2844500 2561100 2409100 2566100 2858400 2516700 3587300 230070 4001400 2172500 4770800 2840700 2716300 2485900 2506000 2743500 1 1 1 1 1 1 1 1 1 1 1 5532400 9304700 113010 9117600 6407700 5307800 6011900 5705700 4796400 5508100 6850100 5152100 8681600 576260 9257700 6140900 5651100 6081200 5775100 5005600 5387600 6544500 2 2 2 2 2 2 2 2 2 2 2 580950000 284020000 296940000 12345 2248 11464 65847;65848;65849 79622;79623;79624;79625 79624 4 LPAELGPQLLHK Unmodified 1314.766 0.76597131 2995 Q9NX08 COMMD8 COMM domain-containing protein 8 yes yes 0 0 0 0 By MS/MS 8 0 1 1 61.285 61.289 3 1.3664E-05 18159 20211116_3447_TMUAki_TMT10x_S_F8 98.105 74.254 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12346 2995 11465 65850 79626 79626 1 LPAEPPALLQTHPPCRR Unmodified 1952.0414 0.041434665 2355 Q92667;Q92667-2 AKAP1 A-kinase anchor protein 1, mitochondrial yes no 0 0 0 1 By MS/MS 2 0 1 1 43.529 43.547 4 0.0002166 11611 20211116_3440_TMUAki_TMT10x_S_F2 74.772 57.071 926170 1531600 24488 1595400 917780 798300 829260 1383700 1190800 1178800 1265200 862540 1429400 99490 1611100 879270 875580 856980 1371200 1198200 1159700 1218200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 926170 1531600 24488 1595400 917780 798300 829260 1383700 1190800 1178800 1265200 862540 1429400 99490 1611100 879270 875580 856980 1371200 1198200 1159700 1218200 1 1 1 1 1 1 1 1 1 1 1 28466000 0 28466000 12347 2355 11466 65851 79627 79627 1 LPANHPLLTGQR Unmodified 1315.7361 0.73606817 971 P38606;P38606-2 ATP6V1A V-type proton ATPase catalytic subunit A yes no 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 35.878 35.709 3 4.0705E-08 8255 20211116_3428_TMUAki_TMT10x_P_F1 116.13 93.61 1177000 1707200 9460.2 2048100 2177500 2001500 1398800 1617600 1754700 1330600 1826100 1095900 1594200 106770 2064600 2068000 2033200 1470600 1655400 1772000 1311400 1759300 2 2 1 2 2 2 2 2 2 2 2 781700 1056300 0 1315000 1872900 1665500 1031500 1104300 1203300 905620 1233400 727730 986600 66450 1328500 1773800 1662400 1095600 1145200 1217700 892660 1188900 1 1 0 1 1 1 1 1 1 1 1 395350 650880 9460.2 733090 304540 336040 367360 513240 551340 425000 592680 368180 607650 40322 736130 294160 370810 375040 510240 554310 418710 570460 1 1 1 1 1 1 1 1 1 1 1 215140000 158690000 56450000 12348 971 11467 65852;65853;65854;65855 79628;79629;79630 79628 3 LPATEKPVLLSK Unmodified 1294.786 0.78603805 3301 Q9Y4L1 HYOU1 Hypoxia up-regulated protein 1 yes yes 0 0 0 1 By MS/MS 2 0 1 1 54.758 54.509 3 0.10016 17427 20211116_3429_TMUAki_TMT10x_P_F2 39.947 25.486 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12349 3301 11468 65856 79631 79631 1 LPATIAR Unmodified 740.45447 0.45447358 1735 Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 37.19 37.602 2 0.094696 10375 20211116_3435_TMUAki_TMT10x_P_F7 55.604 23.539 2919100 4801600 25849 4648200 4553100 4525200 3506700 2856500 3493700 3012600 3756600 2718000 4479800 277380 4750900 4340200 4580100 3611300 2993200 3564100 2935900 3615700 3 3 1 3 3 3 3 3 3 3 3 1998400 3361300 0 3154000 3771000 3715000 2495300 1995600 2508500 2105600 2592600 1860700 3135700 178900 3240700 3583000 3711400 2598200 2119000 2554400 2051900 2498400 2 2 0 2 2 2 2 2 2 2 2 920610 1440300 25849 1494200 782060 810250 1011400 860950 985180 907000 1164000 857370 1344200 98475 1510300 757210 868750 1013100 874180 1009700 883930 1117300 1 1 1 1 1 1 1 1 1 1 1 97026000 72044000 24982000 12350 1735 11469 65857;65858;65859 79632 79632 1 LPAVSSVACGASVGYAVTK Unmodified 1835.9451 0.94513424 723 P18754;P18754-2 RCC1 Regulator of chromosome condensation yes no 0 0 0 0 By MS/MS By MS/MS 2 0.667 2 5 2 4 5 65.649 65.392 2;3 1.3561E-70 21914 20211116_3429_TMUAki_TMT10x_P_F2 285.73 248.88 55580000 89939000 1973100 87973000 63329000 92657000 65077000 70913000 57769000 66195000 70953000 51765000 83915000 6454600 89955000 60879000 93615000 65693000 73056000 59558000 64844000 68038000 16 16 11 16 16 16 16 16 16 16 16 35773000 53733000 991820 52225000 38004000 71266000 44168000 46027000 36550000 42534000 43509000 33315000 50133000 3826500 53669000 36649000 70859000 44243000 47966000 37764000 41685000 41756000 9 9 5 9 9 9 9 9 9 9 9 19808000 36206000 981290 35748000 25325000 21391000 20909000 24886000 21219000 23661000 27445000 18450000 33782000 2628100 36287000 24231000 22756000 21450000 25090000 21794000 23159000 26282000 7 7 6 7 7 7 7 7 7 7 7 6566800000 4122100000 2444700000 12351 723 11470 65860;65861;65862;65863;65864;65865;65866;65867;65868 79633;79634;79635;79636;79637;79638;79639;79640;79641;79642;79643;79644;79645;79646;79647;79648;79649 79639 17 LPCIFICENNR Unmodified 1434.6748 0.67478982 557 P08559;P08559-3;P08559-4;P08559-2 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial yes no 0 0 0 0 By MS/MS 8 0 1 1 65.596 65.753 2 7.8303E-08 20520 20211116_3436_TMUAki_TMT10x_P_F8 123.35 106.41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12352 557 11471 65869 79650 79650 1 LPDGSSFTNQFPSDAPLEEAR Unmodified 2277.055 0.054955282 2343 Q92575 UBXN4 UBX domain-containing protein 4 yes yes 0 0 0 0 By MS/MS 4.33 0.471 2 1 3 70.782 70.704 3 5.6815E-08 23366 20211116_3442_TMUAki_TMT10x_S_F4 92.932 81.887 4164600 7433500 27552 6932900 5540400 5130900 5148800 4500000 4322300 5072400 5656800 3877800 6934400 390220 7081100 5304200 5324000 5217600 4624200 4480700 4930400 5415600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4164600 7433500 27552 6932900 5540400 5130900 5148800 4500000 4322300 5072400 5656800 3877800 6934400 390220 7081100 5304200 5324000 5217600 4624200 4480700 4930400 5415600 2 2 2 2 2 2 2 2 2 2 2 1131800000 0 1131800000 12353 2343 11472 65870;65871;65872 79651;79652;79653 79652 3 LPDGTSLTQTFR Unmodified 1334.683 0.68302954 1510 Q04323;Q04323-2 UBXN1 UBX domain-containing protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 58.083 58.711 2 5.6941E-15 19332 20211116_3446_TMUAki_TMT10x_S_F7 184.9 162.12 14749000 24342000 46075 23972000 19812000 25982000 15855000 19994000 18312000 16338000 19774000 13733000 22712000 1294400 24512000 18897000 26210000 16366000 20521000 18574000 16107000 19030000 3 3 2 3 3 3 3 3 3 3 3 9108900 14516000 45078 14088000 14444000 20994000 11595000 12106000 11052000 9932500 11642000 8481300 13543000 829660 14506000 13778000 20762000 11893000 12692000 11288000 9790200 11212000 2 2 1 2 2 2 2 2 2 2 2 5640200 9826200 997.51 9884000 5368400 4987100 4260700 7887800 7260300 6405000 8132400 5251600 9169200 464730 10006000 5119700 5447800 4472600 7829000 7285700 6316500 7818000 1 1 1 1 1 1 1 1 1 1 1 2474400000 1419000000 1055400000 12354 1510 11473 65873;65874;65875 79654;79655;79656;79657 79657 4 LPDGYEFKFPNR Unmodified 1481.7303 0.73031409 572 P09382 LGALS1 Galectin-1 yes yes 0 0 0 1 By MS/MS 8 0 1 1 59.103 59.281 3 0.034043 17870 20211116_3436_TMUAki_TMT10x_P_F8 54.007 39.035 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12355 572 11474 65876 79658 79658 1 LPDPFTPNLK Unmodified 1140.6179 0.61791009 12 A5YKK6;A5YKK6-3;A5YKK6-2 CNOT1 CCR4-NOT transcription complex subunit 1 yes no 0 0 0 0 By MS/MS 7 0 1 1 68.295 68.624 2 0.0019405 23509 20211116_3446_TMUAki_TMT10x_S_F7 82.645 53.918 7400300 14031000 388890 12554000 9315500 10025000 8574500 11530000 10765000 11228000 11558000 6893300 13087000 1002800 12873000 8937000 10402000 8804000 11638000 10884000 10979000 11125000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7400300 14031000 388890 12554000 9315500 10025000 8574500 11530000 10765000 11228000 11558000 6893300 13087000 1002800 12873000 8937000 10402000 8804000 11638000 10884000 10979000 11125000 2 2 2 2 2 2 2 2 2 2 2 261740000 0 261740000 12356 12 11475 65877 79659;79660 79660 2 LPDYKPYPMYPATTSLVNVVPK Oxidation (M) 2508.2974 0.29743416 1470 Q00535;Q00535-2 CDK5 Cyclin-dependent-like kinase 5 yes no 0 0 1 1 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 72.298 72.026 4 9.7418E-11 24492 20211116_3429_TMUAki_TMT10x_P_F2 116.21 101.91 13015000 20844000 290180 19267000 13003000 22469000 15591000 13759000 14003000 14737000 16151000 12121000 19443000 1343900 19815000 12550000 22497000 15630000 14458000 14391000 14352000 15514000 7 7 6 7 7 7 7 7 7 7 7 9614300 14749000 104230 13648000 8484700 18090000 11375000 9523700 10025000 10442000 11636000 8952600 13759000 872990 14067000 8214100 17963000 11345000 10143000 10315000 10161000 11175000 5 5 4 5 5 5 5 5 5 5 5 3400800 6094400 185950 5619700 4517900 4378800 4215600 4235500 3978100 4294500 4515600 3167900 5684900 470900 5748000 4335600 4534100 4284600 4315400 4076500 4191800 4339400 2 2 2 2 2 2 2 2 2 2 2 1831200000 1185900000 645300000 12357 1470 11476 65878;65879;65880 79661;79662;79663;79664;79665;79666;79667 79661 1972 7 LPEDPLLSGLLDSPALK Unmodified 1776.9873 0.98731663 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 5.32 1.71 2 4 4 5 6 8 2 20 11 72.59 72.594 2;3 3.2967E-60 26447 20211116_3445_TMUAki_TMT10x_S_F6 285.54 242.23 155470000 245180000 870770 242980000 128120000 172970000 157900000 95784000 93288000 117310000 158760000 144750000 228770000 11423000 246990000 123530000 178800000 156600000 101930000 100060000 113690000 151120000 34 34 17 34 34 35 35 34 34 34 34 79322000 122690000 516960 120870000 62263000 101850000 71780000 49156000 46671000 59054000 79610000 73849000 114480000 5479500 123150000 59884000 103740000 71535000 52934000 49748000 57267000 75777000 18 18 8 18 18 19 19 18 18 18 18 76147000 122490000 353810 122110000 65861000 71126000 86117000 46628000 46617000 58260000 79150000 70898000 114290000 5943800 123840000 63645000 75053000 85070000 48992000 50308000 56420000 75346000 16 16 9 16 16 16 16 16 16 16 16 30667000000 15348000000 15319000000 12358 1092 11477 65881;65882;65883;65884;65885;65886;65887;65888;65889;65890;65891;65892;65893;65894;65895;65896;65897;65898;65899;65900;65901;65902;65903;65904;65905;65906;65907;65908;65909;65910;65911 79668;79669;79670;79671;79672;79673;79674;79675;79676;79677;79678;79679;79680;79681;79682;79683;79684;79685;79686;79687;79688;79689;79690;79691;79692;79693;79694;79695;79696;79697;79698;79699;79700;79701;79702;79703;79704;79705;79706;79707;79708 79703 41 LPEELGRDQNTVETLQR Unmodified 1997.0178 0.017781914 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS 3 0 1 1 48.807 48.455 3 4.1693E-29 16520 20211116_3441_TMUAki_TMT10x_S_F3 180.62 161.42 883170 1488500 19860 1682500 736290 665910 601550 1601300 1521600 1205500 1475400 822470 1389700 89673 1687600 703810 762120 645710 1569000 1506000 1193700 1424700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 883170 1488500 19860 1682500 736290 665910 601550 1601300 1521600 1205500 1475400 822470 1389700 89673 1687600 703810 762120 645710 1569000 1506000 1193700 1424700 1 1 1 1 1 1 1 1 1 1 1 115120000 0 115120000 12359 1475 11478 65912 79709 79709 1 LPEHCIEYVR Unmodified 1314.6391 0.63905624 2268 Q8TBC4;Q8TBC4-2 UBA3 NEDD8-activating enzyme E1 catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 38.29 38.332 3 1.9169E-07 8819 20211116_3444_TMUAki_TMT10x_S_F5 108.1 94.02 935440 1473800 10680 1733600 2368100 2140700 1482900 1233200 1228500 1175300 1273200 871060 1376200 107570 1756300 2249000 2135300 1542600 1297900 1262500 1150200 1226800 1 1 1 1 1 1 1 1 1 1 1 935440 1473800 10680 1733600 2368100 2140700 1482900 1233200 1228500 1175300 1273200 871060 1376200 107570 1756300 2249000 2135300 1542600 1297900 1262500 1150200 1226800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 102800000 102800000 0 12360 2268 11479 65913;65914 79710;79711 79711 2 LPETNLFETEETRK Unmodified 1705.8523 0.85227972 1760 Q15046;Q15046-2 KARS Lysine--tRNA ligase yes no 0 0 0 1 By MS/MS By MS/MS 3.5 1.12 1 1 1 1 3 1 54.376 54.365 3 3.9422E-20 17881 20211116_3430_TMUAki_TMT10x_P_F3 158.89 145.89 63495000 104400000 778050 117970000 75804000 75204000 54242000 59882000 65750000 58549000 79810000 59126000 97466000 6099600 118750000 72186000 78907000 56503000 61617000 66885000 57237000 76555000 7 7 6 7 7 7 7 7 7 7 7 25586000 41364000 126800 45654000 42574000 46435000 29501000 22332000 26550000 22781000 31104000 23824000 38613000 2415300 46284000 40497000 46715000 30516000 23935000 27301000 22231000 29864000 3 3 2 3 3 3 3 3 3 3 3 37909000 63035000 651240 72316000 33230000 28770000 24741000 37550000 39200000 35768000 48706000 35302000 58853000 3684300 72467000 31689000 32192000 25987000 37682000 39584000 35006000 46691000 4 4 4 4 4 4 4 4 4 4 4 3478000000 2201800000 1276200000 12361 1760 11480 65915;65916;65917;65918 79712;79713;79714;79715;79716;79717;79718;79719 79714 8 LPFAAAQIGNSFR Unmodified 1390.7357 0.73573382 1001 P41250 GARS Glycine--tRNA ligase yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 4 1 3 70.167 70.113 2;3 2.1511E-14 22626 20211116_3431_TMUAki_TMT10x_P_F4 167.73 129.65 2703900 3899200 0 3643400 2943800 5599500 3429600 2827200 3338000 3259200 3125500 2517300 3637400 188020 3764200 2832300 5521500 3450600 3027300 3392400 3165300 3021600 1 1 0 1 1 1 1 1 1 1 1 2703900 3899200 0 3643400 2943800 5599500 3429600 2827200 3338000 3259200 3125500 2517300 3637400 188020 3764200 2832300 5521500 3450600 3027300 3392400 3165300 3021600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 799370000 380000000 419370000 12362 1001 11481 65919;65920;65921;65922 79720;79721;79722 79720 3 LPFPIIDDR Unmodified 1084.5917 0.59169534 859 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 0 0 By MS/MS 3 0 1 1 73.64 73.326 2 0.002041 26618 20211116_3441_TMUAki_TMT10x_S_F3 90.308 59.59 3993400 7446900 64469 6672300 4095600 4251400 4016300 4343600 3521800 3986300 5254200 3718700 6945800 392590 6825400 3928900 4482400 4062700 4401000 3665900 3908000 5014900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3993400 7446900 64469 6672300 4095600 4251400 4016300 4343600 3521800 3986300 5254200 3718700 6945800 392590 6825400 3928900 4482400 4062700 4401000 3665900 3908000 5014900 1 1 1 1 1 1 1 1 1 1 1 154130000 0 154130000 12363 859 11482 65923 79723 79723 1 LPFPIIDDRNR Unmodified 1354.7357 0.73573382 859 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 59.431 59.518 3 6.3123E-09 17448 20211116_3447_TMUAki_TMT10x_S_F8 157.28 125.86 6690400 10239000 0 10983000 8040800 10319000 6894100 8525400 8290900 7567500 8048900 6229100 9556900 534720 11142000 7678500 10513000 7096200 8729900 8364900 7430300 7771900 2 2 0 2 2 2 2 2 2 2 2 3868200 5753100 0 6370900 4921300 7828100 4647700 4552400 4795100 4226000 4486500 3601700 5370600 334320 6477500 4711800 7811200 4733300 4784100 4860800 4140800 4337500 1 1 0 1 1 1 1 1 1 1 1 2822200 4485900 0 4612400 3119400 2490700 2246400 3973000 3495800 3341500 3562300 2627400 4186300 200400 4664700 2966700 2701600 2362900 3945800 3504000 3289500 3434400 1 1 0 1 1 1 1 1 1 1 1 693090000 444110000 248980000 12364 859 11483 65924;65925 79724;79725 79725 2 LPFTPLSYIQGLSHR Unmodified 1727.9359 0.93589019 3178 Q9UM00;Q9UM00-1;Q9UM00-2 TMCO1 Transmembrane and coiled-coil domain-containing protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 77.921 77.928 3 2.4199E-15 25266 20211116_3445_TMUAki_TMT10x_S_F6 159.12 132.99 8560900 13813000 187360 13632000 10649000 10851000 11000000 7144100 6514600 7851600 10595000 7972200 12888000 879780 13878000 10229000 11142000 11001000 7471900 6968600 7639100 10095000 3 3 2 3 3 3 3 3 3 3 3 2517800 3753400 56590 3672100 2272200 4049500 2614200 1973100 2020600 2016100 2856500 2344700 3502000 258040 3757500 2190800 4055400 2615500 2112200 2111300 1967300 2729700 1 1 1 1 1 1 1 1 1 1 1 6043100 10060000 130770 9959700 8376900 6801300 8386000 5171000 4494000 5835400 7738700 5627400 9386300 621730 10120000 8038100 7086900 8385300 5359700 4857300 5671800 7364800 2 2 1 2 2 2 2 2 2 2 2 2641300000 645300000 1996000000 12365 3178 11484 65926;65927;65928 79726;79727;79728 79727 3 LPGGELNPGEDEVEGLKR Unmodified 1907.9589 0.95887005 246 O43809 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 0 0 0 1 By MS/MS By MS/MS 3.29 1.03 2 2 2 1 4 3 55.113 55.095 3 2.0507E-31 19173 20211116_3441_TMUAki_TMT10x_S_F3 182.31 171.49 15220000 25242000 218770 27601000 22813000 31300000 19147000 21869000 24272000 23031000 21601000 14172000 23562000 1104200 28046000 21793000 31446000 19772000 22745000 24374000 22445000 20920000 5 5 3 5 5 5 5 5 5 5 5 10290000 16190000 103500 18057000 19302000 26048000 14938000 14517000 16467000 15622000 14311000 9581500 15114000 607910 18409000 18402000 25784000 15427000 15375000 16609000 15212000 13872000 3 3 1 3 3 3 3 3 3 3 3 4929600 9051600 115270 9543400 3511100 5252400 4209800 7351400 7804900 7408600 7290400 4590800 8448000 496260 9636900 3391100 5662600 4345000 7370200 7764600 7233300 7048700 2 2 2 2 2 2 2 2 2 2 2 5091100000 3853600000 1237500000 12366 246 11485 65929;65930;65931;65932;65933;65934;65935 79729;79730;79731;79732;79733;79734;79735;79736;79737 79734 9 LPGHAGSINEVAFHPDEPIIISASSDK Unmodified 2800.4032 0.40317287 2436 Q96DI7 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes yes 0 0 0 0 By MS/MS 6 0 1 1 61.317 61.309 4 5.4779E-18 18522 20211116_3445_TMUAki_TMT10x_S_F6 134.31 106.99 1801000 3204600 72998 3678400 2194900 1931000 1850000 1703900 1696200 1964600 2329600 1677500 2992000 222860 3693000 2100300 2069800 1889800 1751700 1754800 1908000 2227700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1801000 3204600 72998 3678400 2194900 1931000 1850000 1703900 1696200 1964600 2329600 1677500 2992000 222860 3693000 2100300 2069800 1889800 1751700 1754800 1908000 2227700 1 1 1 1 1 1 1 1 1 1 1 353800000 0 353800000 12367 2436 11486 65936 79738 79738 1 LPGHAGSINEVAFHPDEPIIISASSDKR Unmodified 2956.5043 0.5042839 2436 Q96DI7 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes yes 0 0 0 1 By MS/MS By MS/MS 6 0.707 1 2 1 1 3 55.245 55.46 5 1.0516E-34 15658 20211116_3434_TMUAki_TMT10x_P_F6 179.33 170.6 9529200 15170000 62323 16382000 11924000 15627000 10373000 14100000 12029000 12104000 13174000 8872200 14160000 763210 16616000 11391000 15932000 10654000 14353000 12205000 11904000 12673000 4 4 1 4 4 4 4 4 4 4 4 4436500 6898300 0 6766800 6259200 10112000 5286900 5618500 5165400 5317300 5489000 4130500 6436400 351470 6962600 5974400 9993900 5409800 5930200 5271700 5205600 5285000 2 2 0 2 2 2 2 2 2 2 2 5092700 8271500 62323 9615400 5665000 5515600 5086100 8481500 6863400 6787200 7684900 4741700 7723300 411750 9653000 5416100 5938500 5244400 8423000 6933700 6698500 7387900 2 2 1 2 2 2 2 2 2 2 2 3648200000 1073100000 2575200000 12368 2436 11487 65937;65938;65939;65940 79739;79740;79741;79742 79739 4 LPGHYLR Unmodified 854.47627 0.47627165 1590 Q13084 MRPL28 39S ribosomal protein L28, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 33.725 33.731 3 0.020652 9420 20211116_3439_TMUAki_TMT10x_S_F1 66.138 36.976 423130 668620 27770 790250 522610 525530 525740 279000 289500 329060 479610 394180 624350 62355 793640 502860 546160 525800 297610 311600 319320 456770 2 2 2 2 2 2 2 2 2 2 2 168720 269770 10935 323680 274870 266630 222580 129770 121730 140750 192090 157170 251930 25666 325550 262910 272070 225380 139170 130750 137010 183130 1 1 1 1 1 1 1 1 1 1 1 254410 398850 16835 466570 247740 258900 303160 149240 167770 188320 287510 237010 372420 36689 468090 239960 274090 300420 158440 180850 182310 273650 1 1 1 1 1 1 1 1 1 1 1 26111000 11628000 14484000 12369 1590 11488 65941;65942 79743;79744 79744 2 LPGKWPFSLSEQQLDAR Unmodified 1971.0214 0.021410729 2515 Q96L92;Q96L92-3;Q96L92-2 SNX27 Sorting nexin-27 yes no 0 0 0 1 By MS/MS By MS/MS 2.75 0.433 1 3 2 2 71.42 71.137 3 6.7471E-06 24150 20211116_3429_TMUAki_TMT10x_P_F2 98.175 86.896 9772500 15728000 0 13655000 10177000 19427000 12225000 10528000 9273700 10312000 11783000 9098300 14668000 708940 14163000 9803200 19235000 12202000 11147000 9652600 10081000 11289000 2 2 0 2 2 2 2 2 2 2 2 9772500 15728000 0 13655000 10177000 19427000 12225000 10528000 9273700 10312000 11783000 9098300 14668000 708940 14163000 9803200 19235000 12202000 11147000 9652600 10081000 11289000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 964060000 824500000 139560000 12370 2515 11489 65943;65944;65945;65946 79745;79746;79747 79746 3 LPGPAPDKPNVYDFK Unmodified 1656.8512 0.8511575 2881 Q9NP77;Q9NP77-2 SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 58.902 58.987 3 5.4506E-05 17778 20211116_3436_TMUAki_TMT10x_P_F8 93.424 74.213 6509300 10618000 86941 11054000 8290800 11091000 6584400 9431200 9098200 8624400 9010900 6061000 9909100 590710 11247000 7908400 11259000 6845900 9648600 9142700 8456300 8695200 2 2 1 2 2 2 2 2 2 2 2 3625000 5781600 86941 6242600 5584900 8005900 4417600 4799300 4775900 4399100 4826000 3375900 5396600 409010 6362300 5330900 7975000 4553100 5029400 4844700 4312900 4653900 1 1 1 1 1 1 1 1 1 1 1 2884300 4836200 0 4811900 2705900 3084900 2166800 4631900 4322300 4225300 4185000 2685100 4512600 181700 4884800 2577500 3284000 2292800 4619100 4298000 4143400 4041300 1 1 0 1 1 1 1 1 1 1 1 805710000 537890000 267820000 12371 2881 11490 65947;65948 79748;79749 79748 2 LPGRENK Unmodified 812.45045 0.45045083 1534 Q07020;Q07020-2 RPL18 60S ribosomal protein L18 yes no 0 0 0 1 By MS/MS 5 0 1 1 29.046 28.976 3 0.05594 6299 20211116_3433_TMUAki_TMT10x_P_F5 53.163 38.387 488510 749090 18295 595570 434020 722420 455410 339450 352550 376030 537950 454990 698400 56788 620320 417810 719520 457640 365550 369740 365740 513200 1 1 1 1 1 1 1 1 1 1 1 488510 749090 18295 595570 434020 722420 455410 339450 352550 376030 537950 454990 698400 56788 620320 417810 719520 457640 365550 369740 365740 513200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10497000 10497000 0 12372 1534 11491 65949 79750 79750 1 LPHFQLSR Unmodified 996.5505 0.55049923 1263 P57088 TMEM33 Transmembrane protein 33 yes yes 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 2 3 44.637 44.508 3 6.3754E-05 13350 20211116_3429_TMUAki_TMT10x_P_F2 163.9 128.28 540460 915290 42357 1002800 974830 1100100 666330 1457500 1769700 6463400 663820 503540 854390 90367 1018300 929530 1122800 726170 1613700 1712800 6106200 674600 3 3 3 3 3 3 3 3 3 3 3 134710 222750 7689.5 255720 436750 429520 225360 282120 337220 764200 209310 125480 207970 22565 261140 413930 423530 243110 308710 333630 726490 205880 1 1 1 1 1 1 1 1 1 1 1 405750 692540 34667 747110 538080 670630 440970 1175400 1432500 5699200 454510 378050 646420 67802 757180 515600 699250 483060 1305000 1379200 5379800 468720 2 2 2 2 2 2 2 2 2 2 2 237760000 97712000 140050000 12373 1263 11492 65950;65951;65952;65953;65954 79751;79752;79753;79754 79751 4 LPHLPGLEDLGIQATPLELK Unmodified 2153.2096 0.20960543 1864 Q16795 NDUFA9 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial yes yes 0 0 0 0 By matching By MS/MS 6.5 0.5 1 1 1 1 79.037 79.054 3 4.2567E-05 27880 20211116_3446_TMUAki_TMT10x_S_F7 75.682 63.706 2713800 4211300 0 3250100 3464900 2802500 3563100 2359800 1853500 1987600 3078200 2526400 3926000 183960 3376800 3321400 2872700 3556100 2410500 2003900 1956600 2931500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2713800 4211300 0 3250100 3464900 2802500 3563100 2359800 1853500 1987600 3078200 2526400 3926000 183960 3376800 3321400 2872700 3556100 2410500 2003900 1956600 2931500 1 1 0 1 1 1 1 1 1 1 1 1405600000 149990000 1255600000 12374 1864 11493 65955;65956 79755 79755 1 LPHSVLLEIQK Unmodified 1275.7551 0.75507227 3335 Q9Y617;Q9Y617-2 PSAT1 Phosphoserine aminotransferase yes no 0 0 0 0 By MS/MS By MS/MS 5.9 2.84 2 1 2 5 5 5 57.613 57.796 2;3 6.3549E-15 17220 20211116_3428_TMUAki_TMT10x_P_F1 190.57 160.76 36010000 60631000 614310 61344000 52667000 60841000 43780000 60063000 59347000 55869000 56413000 33534000 56578000 3761200 62523000 50311000 61995000 45354000 60982000 59590000 54737000 54510000 11 11 9 11 11 11 11 11 11 11 11 12696000 19920000 216040 21567000 27430000 36721000 20112000 20736000 20594000 18627000 18924000 11823000 18593000 1430200 22112000 26128000 36115000 20798000 21827000 20870000 18279000 18307000 4 4 2 4 4 4 4 4 4 4 4 23314000 40711000 398260 39778000 25237000 24121000 23668000 39327000 38753000 37241000 37488000 21711000 37984000 2331000 40412000 24183000 25880000 24557000 39155000 38720000 36458000 36203000 7 7 7 7 7 7 7 7 7 7 7 7254600000 4414100000 2840500000 12375 3335 11494 65957;65958;65959;65960;65961;65962;65963;65964;65965;65966 79756;79757;79758;79759;79760;79761;79762;79763;79764;79765;79766;79767;79768;79769;79770 79757 15 LPIGDVATQYFADR Unmodified 1564.7886 0.78855725 2609 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 By MS/MS By MS/MS 6.2 0.748 2 4 4 5 5 74.734 74.79 2;3 3.1825E-60 26002 20211116_3446_TMUAki_TMT10x_S_F7 298.31 268.54 30539000 51594000 229890 48038000 33349000 47219000 38218000 30808000 29242000 34165000 37155000 28435000 48129000 2602300 49246000 32101000 47786000 38234000 32253000 30423000 33229000 35597000 12 12 7 12 12 12 12 12 12 12 12 18066000 30140000 192290 27981000 18693000 32195000 21666000 18491000 17191000 20306000 20957000 16822000 28116000 1655600 28761000 18008000 32230000 21683000 19546000 17818000 19757000 20100000 6 6 5 6 6 6 6 6 6 6 6 12473000 21453000 37605 20057000 14657000 15024000 16552000 12317000 12052000 13859000 16198000 11613000 20013000 946740 20485000 14094000 15556000 16551000 12706000 12605000 13472000 15497000 6 6 2 6 6 6 6 6 6 6 6 8202700000 4271600000 3931000000 12376 2609 11495 65967;65968;65969;65970;65971;65972;65973;65974;65975;65976 79771;79772;79773;79774;79775;79776;79777;79778;79779;79780;79781;79782;79783;79784 79783 14 LPIGDVATQYFADRDMFCAGR Oxidation (M) 2418.1097 0.10965016 2609 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 1 1 By MS/MS By MS/MS 7.17 0.687 1 3 2 4 2 73.419 73.511 3;4 3.3863E-05 25504 20211116_3446_TMUAki_TMT10x_S_F7 77.469 62.314 33191000 52674000 324600 47010000 36048000 63969000 40145000 42485000 40675000 42889000 44209000 30905000 49129000 2900000 48612000 34674000 63639000 40523000 44292000 41482000 41871000 42537000 6 6 4 6 6 6 6 6 6 6 6 24488000 35975000 221520 32611000 23520000 50515000 27511000 28252000 28010000 30669000 31256000 22802000 33556000 2178800 33774000 22663000 49857000 27712000 29921000 28589000 29854000 30051000 4 4 3 4 4 4 4 4 4 4 4 8703400 16699000 103080 14399000 12528000 13454000 12634000 14233000 12665000 12220000 12953000 8103300 15573000 721270 14838000 12011000 13782000 12811000 14371000 12893000 12017000 12486000 2 2 1 2 2 2 2 2 2 2 2 22655000000 16413000000 6242000000 12377 2609 11496 65977;65978;65979;65980;65981;65982 79785;79786;79787;79788;79789;79790 79789 2847 6 LPIGDVATQYFADRDMFCAGR Unmodified 2402.1147 0.11473554 2609 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 1 By MS/MS By MS/MS 5.71 3.01 2 2 3 4 3 78.412 78.418 3 1.1646E-55 24803 20211116_3447_TMUAki_TMT10x_S_F8 233.38 218.45 65410000 113030000 203380 113960000 74434000 68631000 77282000 27580000 21732000 34686000 66158000 60896000 105470000 4595600 115520000 71380000 71790000 76522000 30326000 26116000 33584000 62445000 7 7 3 7 7 7 7 7 7 7 7 28633000 48383000 6190.1 48576000 26007000 35997000 32842000 10922000 7322900 13379000 25925000 26653000 45147000 1442600 49353000 25050000 36884000 32165000 12444000 9226500 12965000 24433000 3 3 1 3 3 3 3 3 3 3 3 36777000 64644000 197190 65388000 48427000 32634000 44441000 16658000 14410000 21308000 40233000 34243000 60323000 3152900 66164000 46330000 34907000 44357000 17882000 16890000 20619000 38012000 4 4 2 4 4 4 4 4 4 4 4 14945000000 8133900000 6811400000 12378 2609 11496 65983;65984;65985;65986;65987;65988;65989 79791;79792;79793;79794;79795;79796;79797 79796 7 LPIPESQVITINPELPVEEAAEDYAK Unmodified 2864.4695 0.4695211 422 O95336 PGLS 6-phosphogluconolactonase yes yes 0 0 0 0 By MS/MS 3 0 1 1 80.086 80.013 3 0.070975 28242 20211116_3430_TMUAki_TMT10x_P_F3 36.049 27.659 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12379 422 11497 65990 79798 79798 1 LPIPRPGEVLGLVGTNGIGK Unmodified 1986.1626 0.16259566 1303 P61221 ABCE1 ATP-binding cassette sub-family E member 1 yes yes 0 0 0 1 By MS/MS By matching 4.33 0.471 2 1 1 2 76.964 76.952 3 1.0996E-06 25448 20211116_3431_TMUAki_TMT10x_P_F4 91.583 66.648 5496900 9011800 0 6697600 5256500 11107000 6604200 5836800 5739600 6427200 6746700 5117800 8400300 401220 7062000 5070700 10924000 6601700 6218100 5912700 6252800 6477100 1 1 0 1 1 1 1 1 1 1 1 5496900 9011800 0 6697600 5256500 11107000 6604200 5836800 5739600 6427200 6746700 5117800 8400300 401220 7062000 5070700 10924000 6601700 6218100 5912700 6252800 6477100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1016200000 317130000 699020000 12380 1303 11498 65991;65992;65993 79799 79799 1 LPLATIVKDLVAQAPLKPK Unmodified 2014.2554 0.25543341 384 O94776;O94776-2 MTA2 Metastasis-associated protein MTA2 yes no 0 0 0 2 By MS/MS 7 0 1 1 79.787 79.828 4 0.0070986 28197 20211116_3446_TMUAki_TMT10x_S_F7 57.482 57.482 1568300 2729400 7066 2315400 3432500 1682200 2466500 2163100 1708000 2132200 2067000 1460300 2545300 162720 2381800 3267400 1763600 2528900 2174100 1783500 2083700 1982800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1568300 2729400 7066 2315400 3432500 1682200 2466500 2163100 1708000 2132200 2067000 1460300 2545300 162720 2381800 3267400 1763600 2528900 2174100 1783500 2083700 1982800 1 1 1 1 1 1 1 1 1 1 1 2354500000 0 2354500000 12381 384 11499 65994 79800 79800 1 LPLCSLPGEPGNGPDQQLQR Unmodified 2175.0743 0.074250936 2478 Q96GX2 ATXN7L3B Putative ataxin-7-like protein 3B yes yes 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 63.128 63.211 3 1.6383E-07 18867 20211116_3434_TMUAki_TMT10x_P_F6 92.474 81.212 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12382 2478 11500 65995;65996 79801;79802 79802 2 LPLFPEPLHVFAPR Unmodified 1631.9188 0.91878356 811 P26358;P26358-2;P26358-3 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 77.342 77.326 3 3.422E-05 25622 20211116_3431_TMUAki_TMT10x_P_F4 97.69 84.922 4493900 6822800 81621 6307800 4432400 5497400 4942900 3959300 3424800 3606400 4807800 4184800 6364500 447780 6459300 4267800 5615800 4940100 4092600 3599700 3536700 4595100 2 2 2 2 2 2 2 2 2 2 2 2585900 3369400 27456 3061200 1859500 3529800 2555100 2066300 1735300 1771200 2596600 2407900 3142900 229800 3151700 1802100 3534100 2530000 2165900 1831800 1742000 2478200 1 1 1 1 1 1 1 1 1 1 1 1908000 3453400 54165 3246600 2572900 1967600 2387800 1893000 1689500 1835200 2211200 1776900 3221600 217980 3307600 2465700 2081700 2410100 1926700 1767800 1794700 2116900 1 1 1 1 1 1 1 1 1 1 1 1324400000 649050000 675320000 12383 811 11501 65997;65998 79803;79804 79803 2 LPLLPHEVR Unmodified 1072.6393 0.63931423 233 O43681 ASNA1 ATPase ASNA1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.8 0.748 2 2 1 2 3 46.078 46.359 3 4.0424E-05 11912 20211116_3434_TMUAki_TMT10x_P_F6 102.62 72.051 2547400 3760900 189650 4423500 3055900 3279800 2686600 3794700 4067100 3625900 4013400 2373300 3511800 395060 4448800 2932300 3423400 2787200 3827200 4075300 3548200 3873200 4 4 4 4 4 4 4 4 4 4 4 569860 850590 20173 965740 1059400 1369800 780440 759180 772000 754640 812420 530750 794130 72903 983130 1010000 1356800 805960 802560 787180 737210 782460 1 1 1 1 1 1 1 1 1 1 1 1977500 2910300 169480 3457700 1996500 1910000 1906100 3035500 3295100 2871200 3201000 1842500 2717700 322160 3465600 1922300 2066600 1981200 3024600 3288100 2811000 3090800 3 3 3 3 3 3 3 3 3 3 3 1664700000 701350000 963400000 12384 233 11502 65999;66000;66001;66002;66003 79805;79806;79807;79808;79809 79805 5 LPLPEPWR Unmodified 1006.56 0.56000128 2854 Q9HB07 C12orf10 UPF0160 protein MYG1, mitochondrial yes yes 0 0 0 0 By MS/MS 8 0 1 1 66.096 66.042 2 0.011282 20118 20211116_3447_TMUAki_TMT10x_S_F8 79.307 24.542 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12385 2854 11503 66004 79810 79810 1 LPLQDVYK Unmodified 974.54368 0.54368251 1416;1520 P68104;Q5VTE0;Q05639 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2 no no 0 0 0 0 By MS/MS By MS/MS 5.8 1.25 2 2 3 2 1 5 5 58.543 58.731 2;3 0.0011381 19339 20211116_3446_TMUAki_TMT10x_S_F7 127.46 81.51 149560000 253370000 2909800 280220000 271840000 318720000 178020000 232070000 245360000 206820000 226030000 139270000 236520000 16781000 284550000 258470000 320360000 187570000 239570000 245980000 203030000 218640000 11 11 10 11 11 11 11 11 11 11 11 93196000 158890000 1975400 174140000 232520000 274640000 137590000 145320000 151510000 131160000 140980000 86789000 148320000 11476000 178080000 220680000 270680000 144960000 153860000 153160000 128680000 136320000 7 7 6 7 7 7 7 7 7 7 7 56361000 94475000 934370 106080000 39324000 44076000 40431000 86750000 93851000 75654000 85051000 52485000 88198000 5304900 106470000 37790000 49686000 42607000 85715000 92827000 74345000 82318000 4 4 4 4 4 4 4 4 4 4 4 15181000000 8260300000 6920300000 12386 1416;1520 11504 66005;66006;66007;66008;66009;66010;66011;66012;66013;66014 79811;79812;79813;79814;79815;79816;79817;79818;79819;79820;79821;79822 79822 12 LPLQLDDAVRPEAEGEEEGR Unmodified 2222.0815 0.081504383 678 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 1 By MS/MS By MS/MS 2.33 1.15 3 2 2 2 5 4 57.82 57.652 3 5.3749E-42 17412 20211116_3440_TMUAki_TMT10x_S_F2 215.08 197.71 25264000 42262000 129810 44204000 30079000 38641000 28135000 32652000 32997000 31893000 35259000 23522000 39442000 2038800 44875000 28784000 39574000 28791000 33477000 33437000 31180000 33943000 13 13 6 13 13 13 13 13 13 13 13 10520000 16693000 24345 17867000 16051000 24675000 14806000 13931000 13551000 13382000 14426000 9794400 15580000 871090 18246000 15354000 24476000 15044000 14690000 13872000 13092000 13889000 5 5 1 5 5 5 5 5 5 5 5 14744000 25569000 105470 26337000 14028000 13966000 13330000 18721000 19447000 18511000 20833000 13728000 23861000 1167700 26629000 13430000 15098000 13747000 18788000 19565000 18087000 20054000 8 8 5 8 8 8 8 8 8 8 8 6574400000 3993900000 2580500000 12387 678 11505 66015;66016;66017;66018;66019;66020;66021;66022;66023 79823;79824;79825;79826;79827;79828;79829;79830;79831;79832;79833;79834;79835;79836 79832 14 LPLQLDDAVRPEAEGEEEGRATVNQDTR Unmodified 3107.5119 0.51194805 678 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 2 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 53.258 53.128 4 3.0643E-52 16097 20211116_3442_TMUAki_TMT10x_S_F4 211.89 194.39 20137000 36068000 74118 39623000 29459000 33229000 22662000 29222000 26663000 26215000 29212000 18746000 33669000 1238700 40075000 28052000 34156000 23466000 29823000 27040000 25727000 28101000 11 11 2 11 11 11 11 11 11 11 11 9956200 17022000 63718 19581000 15309000 24348000 14304000 14084000 12694000 13134000 13352000 9269300 15893000 784510 19866000 14646000 24279000 14512000 14809000 13008000 12866000 12860000 5 5 1 5 5 5 5 5 5 5 5 10180000 19046000 10401 20042000 14150000 8881600 8358200 15138000 13969000 13081000 15860000 9476900 17776000 454150 20209000 13406000 9877000 8954600 15014000 14032000 12860000 15241000 6 6 1 6 6 6 6 6 6 6 6 13301000000 7412700000 5888500000 12388 678 11506 66024;66025;66026;66027;66028;66029;66030;66031 79837;79838;79839;79840;79841;79842;79843;79844;79845;79846;79847 79846 11 LPLTPVFEGLAFK Unmodified 1430.8173 0.81733818 1562 Q12769 NUP160 Nuclear pore complex protein Nup160 yes yes 0 0 0 0 By MS/MS 3 0 1 1 80.551 80.514 3 0.00022797 29428 20211116_3441_TMUAki_TMT10x_S_F3 81.494 56.702 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12389 1562 11507 66032 79848 79848 1 LPLVTPHTQCR Unmodified 1320.6972 0.69723982 1336 P62191 PSMC1 26S protease regulatory subunit 4 yes yes 0 0 0 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 37.816 37.717 3 7.4126E-15 8965 20211116_3440_TMUAki_TMT10x_S_F2 188.99 164.09 1806700 2605200 28936 3095200 3000700 2782600 1989400 2139300 2260300 1839300 2374100 1682300 2432700 181750 3118300 2852800 2839500 2079200 2198500 2291700 1808700 2286700 4 4 3 4 4 4 4 4 4 4 4 978310 1392500 24022 1682200 2235000 2164500 1271600 1264000 1401100 1023100 1358700 911080 1300400 121100 1702900 2120300 2155000 1344200 1323300 1418200 1009100 1312000 2 2 2 2 2 2 2 2 2 2 2 828370 1212700 4914 1412900 765680 618120 717800 875300 859230 816150 1015400 771240 1132300 60654 1415400 732510 684510 734980 875190 873470 799530 974660 2 2 1 2 2 2 2 2 2 2 2 259940000 179650000 80292000 12390 1336 11508 66033;66034;66035;66036;66037 79849;79850;79851;79852 79852 4 LPLVVEDFVK Unmodified 1157.6696 0.66961131 2219 Q8NB37;Q8NB37-2;Q8NB37-3 PDDC1 Parkinson disease 7 domain-containing protein 1 yes no 0 0 0 0 By MS/MS 6 0 1 1 79.165 79.157 2 0.0011498 25757 20211116_3445_TMUAki_TMT10x_S_F6 83.948 53.29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12391 2219 11509 66038 79853 79853 1 LPNFGFVVFDDSEPVQK Unmodified 1936.9571 0.95707914 1616 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.32 1.56 1 4 4 4 6 9 17 11 68.985 69.01 2;3 3.3906E-48 27791 20211116_3435_TMUAki_TMT10x_P_F7 256.95 232.69 130740000 203200000 1277600 188770000 121620000 177290000 154250000 97150000 104180000 114280000 142890000 121730000 189560000 10447000 193430000 117420000 179520000 153210000 103330000 109550000 110910000 136650000 34 34 20 34 34 34 34 34 34 34 34 64333000 96996000 1030900 92176000 51903000 99617000 62236000 49901000 50006000 57532000 69371000 59906000 90489000 5858000 94486000 50072000 99907000 62210000 53474000 52095000 55874000 66321000 23 23 15 23 23 23 23 23 23 23 23 66412000 106210000 246650 96596000 69715000 77678000 92014000 47249000 54178000 56751000 73523000 61828000 99066000 4589000 98940000 67344000 79616000 90997000 49859000 57459000 55035000 70326000 11 11 5 11 11 11 11 11 11 11 11 40684000000 18927000000 21757000000 12392 1616 11510 66039;66040;66041;66042;66043;66044;66045;66046;66047;66048;66049;66050;66051;66052;66053;66054;66055;66056;66057;66058;66059;66060;66061;66062;66063;66064;66065;66066 79854;79855;79856;79857;79858;79859;79860;79861;79862;79863;79864;79865;79866;79867;79868;79869;79870;79871;79872;79873;79874;79875;79876;79877;79878;79879;79880;79881;79882;79883;79884;79885;79886;79887;79888;79889;79890 79864 37 LPNFGFVVFDDSEPVQR Unmodified 1964.9632 0.96322715 3188 Q9UN86;Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 6.43 0.495 4 3 3 4 79.747 79.756 2;3 1.0785E-15 26004 20211116_3445_TMUAki_TMT10x_S_F6 152.07 139.09 8637800 14616000 88013 11758000 10270000 14027000 12213000 10257000 9176400 10184000 11031000 8042200 13627000 677410 12231000 9892300 14065000 12193000 10617000 9534100 9949500 10584000 5 5 1 5 5 5 5 5 5 5 5 3872000 6445200 88013 4964800 3827900 8176400 5520100 5331600 4276500 4789100 4860900 3605800 6008600 392010 5217500 3717600 8067500 5472300 5548200 4425700 4699700 4671100 2 2 1 2 2 2 2 2 2 2 2 4765800 8170300 0 6793400 6442100 5850700 6693100 4925200 4899900 5395200 6170500 4436300 7618600 285400 7013600 6174700 5997600 6720500 5068400 5108400 5249900 5913100 3 3 0 3 3 3 3 3 3 3 3 7083300000 2333500000 4749800000 12393 3188 11511 66067;66068;66069;66070;66071;66072;66073 79891;79892;79893;79894;79895 79893 5 LPNLLGR Unmodified 781.48102 0.48102268 3310 Q9Y512 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 0 0 0 0 By MS/MS 2 0 1 1 56.56 56.309 2 0.014509 18162 20211116_3429_TMUAki_TMT10x_P_F2 88.35 20.461 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12394 3310 11512 66074 79896 79896 1 LPNLTHLNLSGNK Unmodified 1419.7834 0.78341229 2357 Q92688;Q92688-2 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 56.97 56.664 3 0.00011347 19847 20211116_3441_TMUAki_TMT10x_S_F3 89.466 59.723 12310000 21127000 102970 25141000 11500000 14966000 11518000 13164000 16000000 14734000 15654000 11462000 19728000 1052500 25213000 11030000 15834000 11821000 13522000 16069000 14325000 15112000 4 4 2 4 4 4 4 4 4 4 4 2938400 4600000 0 5659700 5247000 6355300 3723600 2998000 3924600 3458500 3521500 2735900 4296300 264640 5709400 4992000 6356000 3862900 3231400 3969500 3358700 3409500 1 1 0 1 1 1 1 1 1 1 1 9371200 16527000 102970 19482000 6253300 8611000 7794800 10166000 12076000 11275000 12133000 8726000 15432000 787880 19503000 6038200 9477800 7958500 10291000 12100000 10966000 11702000 3 3 2 3 3 3 3 3 3 3 3 773130000 399420000 373720000 12395 2357 11513 66075;66076;66077 79897;79898;79899;79900;79901 79900 5 LPPEEASPYVVDHGESGPLR Unmodified 2148.0487 0.048747692 1214 P53992 SEC24C Protein transport protein Sec24C yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 49.416 49.457 3 7.1716E-19 15832 20211116_3430_TMUAki_TMT10x_P_F3 157.22 147.16 2495900 4157300 15530 4516000 4688500 6369600 3488200 4115100 4535400 3614000 3777400 2324000 3880600 235780 4609400 4465300 6323900 3633400 4282700 4541200 3550300 3667400 3 3 2 3 3 3 3 3 3 3 3 2495900 4157300 15530 4516000 4688500 6369600 3488200 4115100 4535400 3614000 3777400 2324000 3880600 235780 4609400 4465300 6323900 3633400 4282700 4541200 3550300 3667400 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 318350000 318350000 0 12396 1214 11514 66078;66079;66080 79902;79903;79904;79905 79902 4 LPPHGYPLEHPFNK Unmodified 1644.8413 0.84126152 3079 Q9UBL3;Q9UBL3-3;Q9UBL3-2 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 yes no 0 0 0 0 By MS/MS 8 0 1 1 46.218 46.347 4 0.050467 12627 20211116_3436_TMUAki_TMT10x_P_F8 39.73 27.962 2063200 3222700 38503 3390300 3910600 4407600 2816100 2470300 2343200 2150000 2777100 1921300 3007800 232810 3462100 3724500 4383900 2899000 2599800 2419900 2113000 2665500 1 1 1 1 1 1 1 1 1 1 1 2063200 3222700 38503 3390300 3910600 4407600 2816100 2470300 2343200 2150000 2777100 1921300 3007800 232810 3462100 3724500 4383900 2899000 2599800 2419900 2113000 2665500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 234010000 234010000 0 12397 3079 11515 66081 79906 79906 1 LPPKVESLESLYFTPIPAR Unmodified 2156.1881 0.18814171 1741 Q14980;Q14980-2;Q14980-5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 77.907 77.853 3 8.1139E-41 26861 20211116_3429_TMUAki_TMT10x_P_F2 205.21 188.53 31059000 51216000 95451 46422000 36509000 47165000 39230000 31202000 31267000 33872000 39778000 28918000 47772000 2484400 47708000 35064000 47644000 39404000 32609000 32459000 32971000 38109000 4 4 2 4 4 4 4 4 4 4 4 17899000 28138000 82860 25966000 16982000 31270000 20883000 17638000 17587000 20056000 21830000 16666000 26247000 1511700 26723000 16383000 31222000 20876000 18694000 18186000 19488000 20927000 2 2 1 2 2 2 2 2 2 2 2 13160000 23078000 12591 20455000 19527000 15895000 18348000 13563000 13680000 13816000 17948000 12252000 21524000 972690 20985000 18680000 16421000 18528000 13915000 14273000 13483000 17182000 2 2 1 2 2 2 2 2 2 2 2 9266100000 5435300000 3830900000 12398 1741 11516 66082;66083;66084;66085;66086 79907;79908;79909;79910 79907 4 LPPQDFLDRLSSLDNLK Unmodified 1970.0473 0.047291129 1536 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 1 By matching By MS/MS 8 0 2 1 1 78.421 78.409 3 0.00058393 25171 20211116_3447_TMUAki_TMT10x_S_F8 64.83 43.372 12109000 20103000 337010 18985000 22794000 14745000 15696000 12413000 10590000 11696000 14857000 11277000 18754000 1467600 19383000 21698000 15230000 16134000 12717000 11148000 11453000 14200000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12109000 20103000 337010 18985000 22794000 14745000 15696000 12413000 10590000 11696000 14857000 11277000 18754000 1467600 19383000 21698000 15230000 16134000 12717000 11148000 11453000 14200000 2 2 2 2 2 2 2 2 2 2 2 1563200000 750610000 812620000 12399 1536 11517 66087;66088 79911;79912 79912 2 LPREPSNPER Unmodified 1193.6153 0.61528433 788 P23588 EIF4B Eukaryotic translation initiation factor 4B yes yes 0 0 0 1 By MS/MS 4 0 1 1 29.618 29.657 3 3.9305E-05 6176 20211116_3431_TMUAki_TMT10x_P_F4 128.08 93.326 270040 421730 0 431590 400300 461890 271980 256610 286030 251760 330150 251420 393550 23208 440050 380540 464060 283030 271120 291940 246080 317120 1 1 0 1 1 1 1 1 1 1 1 270040 421730 0 431590 400300 461890 271980 256610 286030 251760 330150 251420 393550 23208 440050 380540 464060 283030 271120 291940 246080 317120 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15910000 15910000 0 12400 788 11518 66089 79913 79913 1 LPSDVVTAVR Unmodified 1055.5975 0.597509 484 P04181;P04181-2 OAT Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form yes no 0 0 0 0 By MS/MS 6 0 1 1 50.546 50.689 2 0.00063034 14087 20211116_3445_TMUAki_TMT10x_S_F6 85.716 50.785 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12401 484 11519 66090 79914 79914 1 LPSFAIPYAIDVLTTGSYPR Unmodified 2180.1518 0.1517562 258 O60244 MED14 Mediator of RNA polymerase II transcription subunit 14 yes yes 0 0 0 0 By matching By MS/MS 4 0 2 1 1 82.452 82.451 3 4.0676E-10 28103 20211116_3442_TMUAki_TMT10x_S_F4 120.4 107.91 449420 726890 3306.5 735980 549190 513770 564550 445400 483900 543430 543100 418470 678300 41739 746860 527180 535560 569350 459240 497920 526710 522080 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 449420 726890 3306.5 735980 549190 513770 564550 445400 483900 543430 543100 418470 678300 41739 746860 527180 535560 569350 459240 497920 526710 522080 1 1 1 1 1 1 1 1 1 1 1 239490000 103420000 136070000 12402 258 11520 66091;66092 79915 79915 1 LPSFELLHK Unmodified 1082.6124 0.61243078 1847 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 61.887 61.867 3 2.3042E-06 18866 20211116_3428_TMUAki_TMT10x_P_F1 166.07 121.72 16121000 24553000 156230 33435000 21102000 22596000 15122000 13386000 12219000 13145000 18022000 15011000 22944000 1488100 33319000 20089000 23481000 15562000 14068000 12763000 12848000 17206000 5 5 4 5 5 5 5 5 5 5 5 9428800 14009000 149340 19359000 15880000 17883000 10215000 7874400 7267500 7717200 10397000 8780300 13092000 1011200 19350000 15093000 18084000 10566000 8506500 7633400 7543500 9932500 3 3 3 3 3 3 3 3 3 3 3 6692600 10544000 6892.5 14075000 5222400 4713100 4906800 5511600 4951200 5427600 7625300 6231000 9852200 476810 13970000 4995900 5396800 4995100 5561000 5130000 5304300 7273100 2 2 1 2 2 2 2 2 2 2 2 2956000000 1447100000 1508900000 12403 1847 11521 66093;66094;66095;66096 79916;79917;79918;79919;79920 79917 5 LPSGEDYNLKLELLHPIIPEQSTFK Unmodified 2880.5273 0.52731075 3256 Q9Y2Z0;Q9Y2Z0-2 SUGT1 Suppressor of G2 allele of SKP1 homolog yes no 0 0 0 1 By MS/MS 8 0 1 1 77.322 77.328 4 1.3112E-16 25320 20211116_3436_TMUAki_TMT10x_P_F8 122.34 116.38 9871300 14271000 0 13593000 9911700 18214000 11800000 10825000 9311600 10662000 12106000 9189600 13314000 622210 13984000 9538500 18104000 11793000 11374000 9681000 10420000 11592000 1 1 0 1 1 1 1 1 1 1 1 9871300 14271000 0 13593000 9911700 18214000 11800000 10825000 9311600 10662000 12106000 9189600 13314000 622210 13984000 9538500 18104000 11793000 11374000 9681000 10420000 11592000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2975700000 2975700000 0 12404 3256 11522 66097 79921 79921 1 LPSLGAGFSQGLK Unmodified 1273.703 0.7030367 2173 Q8IZL8 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 3 2 1 68.699 68.329 3 0.0013496 24632 20211116_3441_TMUAki_TMT10x_S_F3 70.438 43.134 1936900 3243600 0 3504700 1899700 1704700 2053600 1885600 1594700 1872600 2410000 1803000 3027600 115000 3530000 1822500 1851700 2060800 1907700 1671300 1829400 2299600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1936900 3243600 0 3504700 1899700 1704700 2053600 1885600 1594700 1872600 2410000 1803000 3027600 115000 3530000 1822500 1851700 2060800 1907700 1671300 1829400 2299600 1 1 0 1 1 1 1 1 1 1 1 527750000 310160000 217590000 12405 2173 11523 66098;66099;66100 79922;79923 79923 2 LPSRPGAQGVEPQNLR Unmodified 1717.9224 0.92236539 2325 Q8WXI9 GATAD2B Transcriptional repressor p66-beta yes yes 0 0 0 1 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 36.516 36.487 3 1.8788E-05 10558 20211116_3439_TMUAki_TMT10x_S_F1 95.602 72.133 263000 429270 0 501030 219050 224180 203350 529940 547640 387270 483070 244870 400830 20103 501930 209570 252330 217740 519110 539770 384100 468000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 263000 429270 0 501030 219050 224180 203350 529940 547640 387270 483070 244870 400830 20103 501930 209570 252330 217740 519110 539770 384100 468000 1 1 0 1 1 1 1 1 1 1 1 45606000 24192000 21415000 12406 2325 11524 66101;66102;66103 79924;79925 79925 2 LPSRPPLPGSGGSQSGAK Unmodified 1691.8955 0.89548193 3313 Q9Y570;Q9Y570-4 PPME1 Protein phosphatase methylesterase 1 yes no 0 0 0 1 By MS/MS 3 0 1 1 39.766 39.479 3 9.5684E-07 12822 20211116_3441_TMUAki_TMT10x_S_F3 89.604 57.542 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12407 3313 11525 66104 79926 79926 1 LPSSLLGPDPRPGLR Unmodified 1573.894 0.89402537 2233 Q8NC56 LEMD2 LEM domain-containing protein 2 yes yes 0 0 0 1 By MS/MS 2 0 1 1 54.868 54.662 3 0.017963 16252 20211116_3440_TMUAki_TMT10x_S_F2 50.155 28.691 2444300 4160200 100690 4373400 2498600 2194200 2264000 2792500 2467200 2620900 3134300 2276600 3882700 297250 4413900 2396000 2383200 2315000 2803900 2524700 2566800 3002900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2444300 4160200 100690 4373400 2498600 2194200 2264000 2792500 2467200 2620900 3134300 2276600 3882700 297250 4413900 2396000 2383200 2315000 2803900 2524700 2566800 3002900 1 1 1 1 1 1 1 1 1 1 1 163230000 0 163230000 12408 2233 11526 66105 79927 79927 1 LPSSVFASEFEEDVGLLNK Unmodified 2080.0365 0.036451671 2471 Q96GA3 LTV1 Protein LTV1 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.816 1 1 1 1 2 80.655 80.635 3 4.4536E-18 27332 20211116_3442_TMUAki_TMT10x_S_F4 155.1 135.54 3955400 6805200 36033 6649000 4546200 4832800 4760600 3158200 2944300 3319100 4784000 3682600 6349400 305270 6767000 4362500 4997800 4761500 3300400 3140100 3235000 4558000 2 2 1 2 2 2 2 2 2 2 2 1698700 3001800 36033 3225000 1770800 2756200 2183700 1561600 1535600 1652200 2331800 1582000 2801800 175430 3267200 1710500 2809900 2173400 1650700 1618800 1609900 2224700 1 1 1 1 1 1 1 1 1 1 1 2256700 3803400 0 3424000 2775400 2076600 2576900 1596700 1408700 1666900 2452200 2100700 3547600 129840 3499700 2652000 2187900 2588100 1649700 1521300 1625100 2333300 1 1 0 1 1 1 1 1 1 1 1 1845100000 785240000 1059900000 12409 2471 11527 66106;66107;66108 79928;79929 79929 2 LPSYFVRPDLGPK Unmodified 1487.8136 0.81364979 2066 Q7LBC6;Q7LBC6-2;Q7LBC6-3 KDM3B Lysine-specific demethylase 3B yes no 0 0 0 1 By MS/MS By MS/MS 3 0 2 1 1 62.534 62.179 3 2.3675E-06 22100 20211116_3441_TMUAki_TMT10x_S_F3 113.53 97.937 20647000 34923000 551040 35401000 23421000 25699000 21480000 18713000 16856000 18175000 24673000 19229000 32588000 2264200 35936000 22442000 26622000 21746000 19362000 17628000 17772000 23559000 3 3 3 3 3 3 3 3 3 3 3 6853100 11282000 300010 11553000 8490800 12793000 8142800 6358300 5984300 6689800 7819600 6383200 10529000 870700 11786000 8150800 12811000 8211000 6799400 6247600 6519900 7486500 1 1 1 1 1 1 1 1 1 1 1 13794000 23640000 251030 23848000 14931000 12906000 13337000 12355000 10872000 11485000 16854000 12845000 22060000 1393500 24150000 14291000 13810000 13535000 12563000 11380000 11252000 16073000 2 2 2 2 2 2 2 2 2 2 2 729740000 438420000 291320000 12410 2066 11528 66109;66110 79930;79931;79932 79931 3 LPTPVLLPYKPQVIR Unmodified 1733.0604 0.060362418 2564 Q96T76;Q96T76-9;Q96T76-8;Q96T76-5 MMS19 MMS19 nucleotide excision repair protein homolog yes no 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 69.301 69.523 3 1.0272E-06 23820 20211116_3446_TMUAki_TMT10x_S_F7 99.991 81.932 7813700 13508000 141310 12407000 9389400 18221000 11074000 10171000 8679300 10799000 11003000 7276400 12600000 801570 12822000 9053900 18023000 11070000 10766000 9016900 10521000 10542000 2 2 2 2 2 2 2 2 2 2 2 7813700 13508000 141310 12407000 9389400 18221000 11074000 10171000 8679300 10799000 11003000 7276400 12600000 801570 12822000 9053900 18023000 11070000 10766000 9016900 10521000 10542000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1098300000 1098300000 0 12411 2564 11529 66111;66112;66113 79933;79934;79935 79935 3 LPTSAPRPTR Unmodified 1094.6196 0.61964142 1672 Q14008;Q14008-2;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 1 By MS/MS 1 0 1 1 30.323 30.389 3 0.070455 8102 20211116_3439_TMUAki_TMT10x_S_F1 48.028 14.837 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12412 1672 11530 66114 79936 79936 1 LPVDFSNIPTYLLK Unmodified 1618.897 0.89704506 3009 Q9NXR7;Q9NXR7-4;Q9NXR7-3;Q9NXR7-1 BRE BRCA1-A complex subunit BRE yes no 0 0 0 0 By matching By MS/MS 3 0 3 1 2 80.638 80.592 2;3 3.5373E-06 29482 20211116_3441_TMUAki_TMT10x_S_F3 113.69 80.462 3812300 8021600 22105 6498400 5551000 5499900 5878400 4266800 4767900 4634800 5545600 3549100 7479300 282230 6722100 5327000 5636800 5911200 4411500 4926700 4511400 5325600 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3812300 8021600 22105 6498400 5551000 5499900 5878400 4266800 4767900 4634800 5545600 3549100 7479300 282230 6722100 5327000 5636800 5911200 4411500 4926700 4511400 5325600 3 3 1 3 3 3 3 3 3 3 3 1481300000 245560000 1235800000 12413 3009 11531 66115;66116;66117 79937;79938;79939 79937 3 LPVITCYADAKPGLQTHGFIIR Unmodified 2469.3202 0.32023529 1726 Q14690 PDCD11 Protein RRP5 homolog yes yes 0 0 0 1 By MS/MS 5 0 1 1 66.936 66.973 4 0.050713 20501 20211116_3444_TMUAki_TMT10x_S_F5 39.171 30.691 3836600 6415500 124160 6119400 4594100 4452300 4694000 5387700 4407200 5310800 5857500 3573200 5985200 444400 6238700 4415000 4659500 4747200 5428300 4547600 5190000 5605700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3836600 6415500 124160 6119400 4594100 4452300 4694000 5387700 4407200 5310800 5857500 3573200 5985200 444400 6238700 4415000 4659500 4747200 5428300 4547600 5190000 5605700 1 1 1 1 1 1 1 1 1 1 1 513010000 0 513010000 12414 1726 11532 66118 79940 79940 1 LPVPAVK Unmodified 722.46906 0.46906101 1135 P50416;P50416-2 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform yes no 0 0 0 0 By MS/MS 1 0 1 1 51.099 50.827 2 0.057686 16417 20211116_3439_TMUAki_TMT10x_S_F1 65.263 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12415 1135 11533 66119 79941 79941 1 LPVVIGGLLDVDCSEDVIK Unmodified 2040.0813 0.081293373 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS By MS/MS 4 1.29 1 1 2 1 1 3 3 80.994 80.982 3 3.3954E-12 26224 20211116_3444_TMUAki_TMT10x_S_F5 122.1 109.94 8058000 13183000 35460 13275000 8379100 10261000 10679000 6698100 6213800 7493200 10532000 7502900 12302000 686530 13491000 8093000 10559000 10574000 7013800 6670100 7285500 10026000 4 4 1 4 4 4 4 4 4 4 4 1705100 2485300 0 2837200 1583700 2994900 1934700 1760000 1470400 1783200 2290000 1587600 2320400 135330 2871900 1527100 3013500 1929700 1852500 1545300 1740600 2183700 1 1 0 1 1 1 1 1 1 1 1 6352900 10698000 35460 10438000 6795400 7266400 8744800 4938000 4743400 5710000 8242300 5915300 9981300 551200 10619000 6565900 7545900 8644400 5161300 5124800 5544900 7842700 3 3 1 3 3 3 3 3 3 3 3 2276600000 479080000 1797500000 12416 1471 11534 66120;66121;66122;66123;66124;66125 79942;79943;79944;79945;79946 79945 5 LPVVVPLHSLDEK Unmodified 1444.829 0.8289655 378 O76031 CLPX ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial yes yes 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 63.008 63.226 3 3.2241E-09 21249 20211116_3446_TMUAki_TMT10x_S_F7 125.28 90.563 8791600 15358000 0 15534000 9482100 9292300 9524800 10221000 9175200 9456800 11594000 8185700 14331000 720220 15741000 9091800 9872200 9648400 10322000 9435300 9267500 11109000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8791600 15358000 0 15534000 9482100 9292300 9524800 10221000 9175200 9456800 11594000 8185700 14331000 720220 15741000 9091800 9872200 9648400 10322000 9435300 9267500 11109000 2 2 0 2 2 2 2 2 2 2 2 494080000 0 494080000 12417 378 11535 66126;66127 79947;79948 79948 2 LQAAATLTEVANGIESLGVKPDLPPPPSK Unmodified 2912.5859 0.58588827 1160 P51610;P51610-2;P51610-4 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 0 1 By MS/MS 8 0 1 1 79.655 79.641 4 0.004758 25698 20211116_3447_TMUAki_TMT10x_S_F8 44.365 38.002 2194700 4156500 15321 3951600 3391400 2295600 3264000 1756400 1706100 1748200 3205900 2043600 3877700 213000 4021000 3249600 2428700 3269300 1812800 1857000 1707700 3046200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2194700 4156500 15321 3951600 3391400 2295600 3264000 1756400 1706100 1748200 3205900 2043600 3877700 213000 4021000 3249600 2428700 3269300 1812800 1857000 1707700 3046200 1 1 1 1 1 1 1 1 1 1 1 573550000 0 573550000 12418 1160 11536 66128 79949 79949 1 LQAALAER Unmodified 870.49232 0.49231565 1832 Q15814 TBCC Tubulin-specific chaperone C yes yes 0 0 0 0 By MS/MS 4 0 1 1 38.7 38.881 2 0.088946 10227 20211116_3442_TMUAki_TMT10x_S_F4 50.607 25.033 279740 429440 0 466320 233160 222340 263070 303050 345910 288350 358180 260440 400850 18671 469470 224060 243370 267840 303610 348720 282230 345140 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 279740 429440 0 466320 233160 222340 263070 303050 345910 288350 358180 260440 400850 18671 469470 224060 243370 267840 303610 348720 282230 345140 1 1 0 1 1 1 1 1 1 1 1 22713000 0 22713000 12419 1832 11537 66129 79950 79950 1 LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR Oxidation (M) 3141.4269 0.4268978 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 1 1 By MS/MS By MS/MS 2.08 0.954 4 4 3 1 6 6 55.271 55.079 3;4 1.3979E-15 16089 20211116_3428_TMUAki_TMT10x_P_F1 115.84 104.53 60077000 111520000 438340 103800000 115770000 171190000 79945000 202880000 211150000 140190000 134790000 55935000 104030000 4886600 107440000 110090000 170950000 87027000 202800000 206350000 139500000 132390000 21 21 7 21 21 21 21 21 21 21 21 28482000 52221000 277480 48921000 91220000 142020000 60982000 94829000 100810000 66436000 60478000 26520000 48715000 2859000 51533000 86705000 137880000 64671000 97948000 99384000 66055000 59590000 9 9 2 9 9 9 9 9 9 9 9 31595000 59301000 160850 54876000 24555000 29163000 18963000 108050000 110330000 73753000 74310000 29416000 55317000 2027600 55911000 23385000 33068000 22356000 104850000 106970000 73444000 72799000 12 12 5 12 12 12 12 12 12 12 12 35604000000 22416000000 13188000000 12420 1474 11538 66130;66131;66132;66133;66134;66135;66136;66137;66138;66139;66140;66141 79951;79952;79953;79954;79955;79956;79957;79958;79959;79960;79961;79962;79963;79964;79965;79966;79967;79968;79969;79970;79971 79953 1994 21 LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR Unmodified 3125.432 0.43198317 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 1 By MS/MS By MS/MS 2.22 1.03 3 2 3 1 4 5 60.387 60.161 3;4 1.3217E-114 20207 20211116_3430_TMUAki_TMT10x_P_F3 280.88 268.96 53997000 91449000 216570 102400000 60745000 54790000 53507000 38753000 34502000 41948000 63049000 50275000 85373000 4248200 102980000 58058000 58392000 54065000 40307000 36945000 40837000 59937000 16 16 8 16 16 16 16 16 16 16 16 17659000 27718000 15559 31435000 22899000 28430000 22156000 9301100 8313000 10980000 18206000 16441000 25877000 1167900 31761000 21929000 28718000 22084000 10472000 9413800 10655000 17256000 8 8 2 8 8 8 8 8 8 8 8 36337000 63731000 201010 70965000 37847000 26360000 31352000 29452000 26189000 30968000 44843000 33834000 59495000 3080300 71218000 36129000 29674000 31981000 29834000 27531000 30183000 42681000 8 8 6 8 8 8 8 8 8 8 8 11769000000 4200300000 7568200000 12421 1474 11538 66142;66143;66144;66145;66146;66147;66148;66149;66150 79972;79973;79974;79975;79976;79977;79978;79979;79980;79981;79982;79983;79984;79985 79978 14 LQADPQRFPHGIR Unmodified 1533.8164 0.81644375 513 P06280 GLA Alpha-galactosidase A yes yes 0 0 0 1 By MS/MS 1 0 1 1 34.743 34.743 4 4.4097E-06 7864 20211116_3428_TMUAki_TMT10x_P_F1 109 93.199 336360 515370 6834.6 538610 738520 644150 402580 377710 386770 333610 449490 313230 480980 39889 549410 700100 643720 425430 396150 396390 327640 431660 1 1 1 1 1 1 1 1 1 1 1 336360 515370 6834.6 538610 738520 644150 402580 377710 386770 333610 449490 313230 480980 39889 549410 700100 643720 425430 396150 396390 327640 431660 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 61019000 61019000 0 12422 513 11539 66151 79986 79986 1 LQAEAFQAR Unmodified 1032.5352 0.53524309 48 CON__Q03247;P02649 APOE Apolipoprotein E yes no 0 0 0 0 By MS/MS 5 0 1 1 40.034 40.157 2 0.03048 9605 20211116_3444_TMUAki_TMT10x_S_F5 64.927 28.8 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12423 48 11540 66152 79987 79987 1 LQAEAPHIVVGTPGR Unmodified 1543.8471 0.84707518 1697 Q14240;Q14240-2 EIF4A2 Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.957 1 2 2 1 3 3 43.11 43.297 3 3.3229E-08 10839 20211116_3434_TMUAki_TMT10x_P_F6 121.19 97.337 13429000 21485000 358640 22545000 21108000 20581000 14493000 18065000 17095000 14610000 18416000 12505000 20051000 1484300 22895000 20090000 21031000 15128000 18391000 17324000 14411000 17724000 8 8 6 8 8 8 8 8 8 8 8 6152000 9539200 184120 10349000 13427000 14182000 7899600 8682700 7945000 6665200 8048700 5729500 8904100 783530 10557000 12746000 14087000 8303300 9045100 8084400 6592700 7761000 3 3 3 3 3 3 3 3 3 3 3 7276500 11945000 174520 12196000 7681400 6399000 6593700 9382400 9149800 7944700 10367000 6775900 11147000 700800 12338000 7343900 6943500 6824300 9345800 9239700 7818500 9963000 5 5 3 5 5 5 5 5 5 5 5 2893300000 1824300000 1068900000 12424 1697 11541 66153;66154;66155;66156;66157;66158 79988;79989;79990;79991;79992;79993;79994;79995 79990 8 LQAEAQELLGYQVDPR Unmodified 1828.9319 0.93192702 2261 Q8TAE8 GADD45GIP1 Growth arrest and DNA damage-inducible proteins-interacting protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 74.469 74.442 3 0.0049511 24329 20211116_3431_TMUAki_TMT10x_P_F4 57.525 38.703 2205800 3183000 40735 3330100 2236300 3750400 2497300 2301400 2091600 2232300 2583100 2054200 2970600 221270 3393100 2153300 3762200 2506900 2410900 2163000 2183000 2476600 1 1 1 1 1 1 1 1 1 1 1 2205800 3183000 40735 3330100 2236300 3750400 2497300 2301400 2091600 2232300 2583100 2054200 2970600 221270 3393100 2153300 3762200 2506900 2410900 2163000 2183000 2476600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 525360000 525360000 0 12425 2261 11542 66159;66160;66161;66162;66163 79996;79997;79998 79996 3 LQAEISQAAR Unmodified 1085.5829 0.58292157 212 O43395;O43395-3 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 39.602 39.724 2 0.00078847 10602 20211116_3442_TMUAki_TMT10x_S_F4 99.568 66.676 1546300 3023100 0 2689900 1966300 1183800 1494800 1300800 1207600 1347700 2161100 1439700 2819700 128400 2745200 1873100 1301500 1532000 1318000 1275000 1314300 2055200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1546300 3023100 0 2689900 1966300 1183800 1494800 1300800 1207600 1347700 2161100 1439700 2819700 128400 2745200 1873100 1301500 1532000 1318000 1275000 1314300 2055200 1 1 0 1 1 1 1 1 1 1 1 48051000 9441100 38610000 12426 212 11543 66164;66165;66166 79999;80000 80000 2 LQAELQGAVR Unmodified 1083.6037 0.60365701 310 O75150;O75150-3 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 0 0 0 0 By MS/MS 5 0 1 1 45.452 45.606 2 0.077345 11749 20211116_3444_TMUAki_TMT10x_S_F5 58.37 26.791 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12427 310 11544 66167 80001 80001 1 LQAFGFCEYKEPESTLR Unmodified 2073.983 0.98297631 1118 P49756;P49756-2;P49756-3 RBM25 RNA-binding protein 25 yes no 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 62.256 62.842 3 5.2556E-08 20504 20211116_3435_TMUAki_TMT10x_P_F7 116.65 93.662 12732000 20205000 97588 20973000 15122000 18195000 13669000 12280000 10571000 12717000 15044000 11855000 18856000 1043600 21300000 14460000 18574000 13845000 12797000 11048000 12402000 14374000 2 2 1 2 2 2 2 2 2 2 2 7308400 11287000 0 11340000 8671400 13699000 8505800 7183100 5920100 7213300 8389700 6803700 10532000 488590 11600000 8301500 13664000 8556400 7633000 6223500 7043700 8016800 1 1 0 1 1 1 1 1 1 1 1 5423900 8918100 97588 9633400 6450400 4495300 5162800 5096700 4650500 5503500 6654600 5050900 8324200 555010 9700300 6158500 4910000 5288300 5163800 4824600 5358200 6357400 1 1 1 1 1 1 1 1 1 1 1 3446000000 1874200000 1571800000 12428 1118 11545 66168;66169 80002;80003 80002 2 LQAFSAAIESCNK Unmodified 1437.6922 0.69221402 1497 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 4 4 4 4 62.618 62.955 2;3 1.6354E-36 20550 20211116_3435_TMUAki_TMT10x_P_F7 274.49 219.51 70504000 115110000 624800 129070000 93169000 91610000 71039000 83029000 69695000 76857000 93613000 65648000 107460000 6292000 130130000 88787000 95444000 73173000 84666000 71810000 75317000 89565000 9 9 4 9 9 9 9 9 9 9 9 26021000 42574000 148200 44991000 47205000 55148000 32902000 30401000 25508000 27757000 33730000 24227000 39735000 2307300 45879000 44893000 54999000 33893000 32080000 26565000 27218000 32283000 4 4 2 4 4 4 4 4 4 4 4 44484000 72538000 476600 84080000 45964000 36461000 38137000 52627000 44187000 49100000 59884000 41421000 67729000 3984700 84248000 43894000 40445000 39280000 52586000 45245000 48099000 57282000 5 5 2 5 5 5 5 5 5 5 5 12784000000 6945100000 5839200000 12429 1497 11546 66170;66171;66172;66173;66174;66175;66176;66177 80004;80005;80006;80007;80008;80009;80010;80011;80012 80005 9 LQALANEQAAAAHELEK Unmodified 1805.9272 0.92717599 2107 Q86UP2;Q86UP2-3;Q86UP2-4;Q86UP2-2 KTN1 Kinectin yes no 0 0 0 0 By MS/MS By MS/MS 4 0.707 1 2 1 1 3 58.328 58.349 3 4.2877E-15 16961 20211116_3444_TMUAki_TMT10x_S_F5 127.78 107.94 23213000 36379000 818560 46192000 28158000 32297000 22848000 28423000 25798000 25542000 30597000 21620000 33982000 2756700 46223000 26915000 33672000 23545000 29008000 26286000 25064000 29368000 5 5 5 5 5 5 5 5 5 5 5 9972800 15096000 263920 18429000 15403000 21043000 13003000 11604000 11497000 10894000 13400000 9287600 14099000 1148800 18605000 14725000 21064000 13268000 12253000 11830000 10669000 12868000 2 2 2 2 2 2 2 2 2 2 2 13241000 21283000 554640 27763000 12754000 11254000 9845500 16820000 14301000 14648000 17197000 12332000 19884000 1607800 27618000 12190000 12608000 10277000 16755000 14456000 14396000 16500000 3 3 3 3 3 3 3 3 3 3 3 1769000000 1039500000 729550000 12430 2107 11547 66178;66179;66180;66181 80013;80014;80015;80016;80017;80018;80019 80019 7 LQAMAPEEILQEQQR Oxidation (M) 1798.8883 0.88834765 2708 Q9BWH6;Q9BWH6-2 RPAP1 RNA polymerase II-associated protein 1 yes no 0 0 1 0 By MS/MS 3 0 1 1 53.68 53.506 3 0.027774 17489 20211116_3430_TMUAki_TMT10x_P_F3 46.121 31.454 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12431 2708 11548 66182 80020 80020 2911 1 LQAQLNELQAQLSQK Unmodified 1710.9264 0.92644771 1741 Q14980;Q14980-2;Q14980-4;Q14980-3;Q14980-5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.12 3.22 3 2 3 4 4 76.139 76.154 2;3 3.5777E-85 24869 20211116_3436_TMUAki_TMT10x_P_F8 345.43 307.74 29672000 50034000 586310 50888000 33927000 51506000 36489000 31363000 31140000 33102000 37767000 27632000 46690000 3019900 51863000 32628000 51980000 36713000 32956000 32149000 32258000 36227000 9 9 5 9 9 9 9 9 9 9 9 22202000 36798000 492520 37521000 24578000 43274000 27577000 23170000 23232000 24501000 27613000 20676000 34340000 2302100 38313000 23669000 43278000 27681000 24612000 23980000 23874000 26502000 6 6 3 6 6 6 6 6 6 6 6 7470100 13235000 93792 13366000 9349100 8232000 8911800 8192900 7908200 8601800 10153000 6956000 12351000 717870 13550000 8958100 8702000 9031400 8344200 8168900 8384100 9724900 3 3 2 3 3 3 3 3 3 3 3 6493600000 4915100000 1578500000 12432 1741 11549 66183;66184;66185;66186;66187;66188;66189;66190 80021;80022;80023;80024;80025;80026;80027;80028;80029;80030 80026 10 LQAQQDAVNIVCHSK Unmodified 1709.8519 0.85190256 1232 P55036;P55036-2 PSMD4 26S proteasome non-ATPase regulatory subunit 4 yes no 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 47.491 47.791 3 8.0168E-24 12522 20211116_3434_TMUAki_TMT10x_P_F6 180.74 162.93 24481000 39424000 157430 49296000 48325000 48930000 28711000 39946000 41015000 31756000 37076000 22795000 36824000 1968100 49587000 45851000 49667000 30529000 40822000 41048000 31352000 35887000 8 8 4 8 8 8 8 8 8 8 8 15704000 23885000 48987 30494000 41014000 42015000 22736000 24191000 24566000 19078000 22649000 14622000 22312000 1161500 30814000 38868000 41691000 24074000 25342000 24844000 18843000 21908000 5 5 2 5 5 5 5 5 5 5 5 8777100 15539000 108440 18803000 7311200 6914500 5975300 15755000 16449000 12678000 14427000 8173100 14512000 806640 18773000 6983200 7975900 6455100 15480000 16204000 12509000 13979000 3 3 2 3 3 3 3 3 3 3 3 3640800000 2373900000 1266900000 12433 1232 11550 66191;66192;66193;66194;66195;66196 80031;80032;80033;80034;80035;80036;80037;80038;80039 80032 9 LQAQSLSTVGPR Unmodified 1255.6884 0.68844927 207 O43290 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 41.713 41.89 2 1.3722E-19 10832 20211116_3436_TMUAki_TMT10x_P_F8 231.05 193.41 798100 1245800 5379.3 1429000 1621800 1409500 910010 1077100 1213400 910750 1201500 743150 1163200 82718 1444600 1537500 1429700 969670 1106900 1220700 896340 1159400 2 2 2 2 2 2 2 2 2 2 2 461560 657550 3346.7 796820 1314800 1142200 627600 572860 645180 501810 634890 429780 614090 53335 808220 1243600 1129500 673070 609050 655220 493020 612770 1 1 1 1 1 1 1 1 1 1 1 336540 588270 2032.6 632220 307060 267340 282410 504220 568240 408940 566650 313370 549080 29383 636410 293930 300180 296600 497850 565520 403320 546670 1 1 1 1 1 1 1 1 1 1 1 124120000 69800000 54324000 12434 207 11551 66197;66198 80040;80041 80040 2 LQATLDMQSGIIHAAEEK Oxidation (M) 1969.9779 0.97789093 73 O00231;O00231-2 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 0 0 1 0 By MS/MS By MS/MS 4.67 0.943 2 1 2 1 59.115 59.133 3 9.7016E-05 18596 20211116_3442_TMUAki_TMT10x_S_F4 75.334 57.417 7525300 13680000 105160 14203000 9320200 11740000 7651800 8955000 9802300 9638100 10143000 7007600 12767000 747040 14416000 8901000 12050000 7915400 9265800 9890100 9385000 9774100 3 3 3 3 3 3 3 3 3 3 3 2702800 4837300 4391.1 4585100 4077700 6885100 3314900 3379700 3548000 3543300 3753000 2516700 4512800 247430 4729700 3891000 6793500 3409500 3618100 3606600 3453800 3614000 1 1 1 1 1 1 1 1 1 1 1 4822400 8842900 100770 9618000 5242500 4855100 4336900 5575200 6254300 6094900 6390100 4490900 8254300 499610 9685900 5010100 5256100 4505800 5647700 6283600 5931200 6160100 2 2 2 2 2 2 2 2 2 2 2 1204800000 721130000 483680000 12435 73 11552 66199;66200;66201 80042;80043;80044;80045 80045 38 4 LQATLDMQSGIIHAAEEK Unmodified 1953.983 0.98297631 73 O00231;O00231-2 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 67.761 67.79 3 2.3377E-15 21689 20211116_3431_TMUAki_TMT10x_P_F4 131.11 114.23 8536800 13048000 0 15075000 9237100 6705100 8583500 4667500 4195000 5454000 8303700 7947200 12183000 541270 15110000 8829100 7301200 8604900 4872000 4605500 5294200 7883000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8536800 13048000 0 15075000 9237100 6705100 8583500 4667500 4195000 5454000 8303700 7947200 12183000 541270 15110000 8829100 7301200 8604900 4872000 4605500 5294200 7883000 2 2 0 2 2 2 2 2 2 2 2 586000000 0 586000000 12436 73 11552 66202;66203 80046;80047;80048 80046 3 LQAVEVVITHLAPGTK Unmodified 1674.9669 0.96685596 3251 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.93 1.53 2 2 10 1 4 11 65.364 65.302 3 2.173E-21 25473 20211116_3440_TMUAki_TMT10x_S_F2 168.67 143.82 71863000 115820000 223330 116460000 74887000 96467000 81160000 59754000 60265000 66667000 80185000 66912000 108080000 6094200 118460000 71969000 98683000 81349000 62814000 62930000 64825000 76735000 12 12 10 12 12 12 12 12 12 12 12 32326000 51176000 87628 51169000 33465000 54687000 34114000 25272000 26141000 27090000 34144000 30099000 47753000 2716900 52254000 32106000 54834000 34322000 27234000 27227000 26382000 32690000 4 4 3 4 4 4 4 4 4 4 4 39537000 64647000 135700 65290000 41422000 41780000 47046000 34482000 34124000 39577000 46041000 36813000 60325000 3377300 66210000 39863000 43849000 47027000 35580000 35704000 38443000 44045000 8 8 7 8 8 8 8 8 8 8 8 12783000000 7414500000 5368600000 12437 3251 11553 66204;66205;66206;66207;66208;66209;66210;66211;66212;66213;66214;66215;66216;66217;66218 80049;80050;80051;80052;80053;80054;80055;80056;80057;80058;80059;80060;80061;80062;80063;80064;80065 80054 17 LQAYHTQTTPLIEYYR Unmodified 1996.0054 0.005426314 1228 P54819;P54819-5;P54819-2;P54819-6 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 4.55 2.61 2 1 2 1 1 2 2 4 7 53.245 53.28 3 3.6414E-29 15410 20211116_3436_TMUAki_TMT10x_P_F8 188.39 171.73 25544000 46938000 265030 48351000 35780000 52737000 34462000 40528000 38085000 33584000 35939000 23785000 43803000 1907800 49292000 34280000 53180000 35137000 41614000 38510000 33086000 34735000 14 14 9 14 14 14 14 14 14 14 14 16499000 29526000 182740 31180000 25461000 42872000 25372000 24754000 24435000 20053000 21452000 15364000 27557000 1181000 31867000 24419000 42547000 25711000 25941000 24794000 19778000 20787000 8 8 5 8 8 8 8 8 8 8 8 9044500 17412000 82292 17171000 10319000 9864300 9090600 15774000 13650000 13531000 14486000 8421000 16246000 726830 17425000 9860600 10633000 9426300 15673000 13716000 13307000 13948000 6 6 4 6 6 6 6 6 6 6 6 12528000000 6680600000 5847500000 12438 1228 11554 66219;66220;66221;66222;66223;66224;66225;66226;66227;66228;66229 80066;80067;80068;80069;80070;80071;80072;80073;80074;80075;80076;80077;80078;80079 80072 14 LQAYHTQTTPLIEYYRK Unmodified 2124.1004 0.10038933 1228 P54819;P54819-5;P54819-2;P54819-6 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 0 0 0 1 By MS/MS 2 0 1 1 50.063 49.798 4 0.00016727 15572 20211116_3429_TMUAki_TMT10x_P_F2 76.82 57.497 2119100 3387500 57224 4036800 4376100 5427400 3180200 3406400 3159400 3042700 3077900 1973600 3163300 260630 4093100 4169400 5397900 3287700 3554500 3212200 2986700 2971700 1 1 1 1 1 1 1 1 1 1 1 2119100 3387500 57224 4036800 4376100 5427400 3180200 3406400 3159400 3042700 3077900 1973600 3163300 260630 4093100 4169400 5397900 3287700 3554500 3212200 2986700 2971700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 745560000 745560000 0 12439 1228 11555 66230 80080 80080 1 LQCPQVDLFYLHAPDHGTPVEETLHACQR Unmodified 3430.6187 0.61867851 218 O43488 AKR7A2 Aflatoxin B1 aldehyde reductase member 2 yes yes 0 0 0 0 By matching By MS/MS 6 0 2 1 1 61.385 61.4 5 0.0059385 18582 20211116_3445_TMUAki_TMT10x_S_F6 43.554 35.367 2845600 4761700 7374.3 4840200 3535000 2876200 3188900 4052600 3190000 3758500 4164000 2649500 4443400 239500 4902900 3380400 3077600 3252800 4052200 3279800 3682900 3986700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2845600 4761700 7374.3 4840200 3535000 2876200 3188900 4052600 3190000 3758500 4164000 2649500 4443400 239500 4902900 3380400 3077600 3252800 4052200 3279800 3682900 3986700 2 2 1 2 2 2 2 2 2 2 2 1254900000 800680000 454230000 12440 218 11556 66231;66232 80081;80082 80081 2 LQCSLDAHEICLQDIQLDPER Unmodified 2552.1999 0.19992173 1529 Q06546 GABPA GA-binding protein alpha chain yes yes 0 0 0 0 By MS/MS 3 0 1 1 69.257 68.987 3 6.4153E-08 23827 20211116_3430_TMUAki_TMT10x_P_F3 91.166 86.549 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12441 1529 11557 66233 80083 80083 1 LQDFKLDFGNSQGK Unmodified 1595.7944 0.79437091 317 O75223;O75223-2;O75223-4 GGCT Gamma-glutamylcyclotransferase yes no 0 0 0 1 By MS/MS 7.33 0.471 2 1 3 63.252 63.433 3 6.8018E-07 20738 20211116_3435_TMUAki_TMT10x_P_F7 101.2 81.88 11495000 19259000 0 16838000 20251000 30276000 16252000 19307000 16692000 15104000 15717000 10703000 17962000 1035500 17549000 19314000 29768000 16708000 20058000 16927000 14925000 15192000 2 2 0 2 2 2 2 2 2 2 2 11495000 19259000 0 16838000 20251000 30276000 16252000 19307000 16692000 15104000 15717000 10703000 17962000 1035500 17549000 19314000 29768000 16708000 20058000 16927000 14925000 15192000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 379460000 379460000 0 12442 317 11558 66234;66235;66236 80084;80085;80086;80087 80085 4 LQDFNVGDYIEAVLDR Unmodified 1865.9159 0.9159426 620 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 By MS/MS By MS/MS 3.4 0.8 1 1 3 3 2 82.323 82.315 2;3 7.0029E-11 27653 20211116_3431_TMUAki_TMT10x_P_F4 132.64 104.99 1312100 2159500 0 2285100 1454200 2186400 1582300 1495600 1612700 1679700 2036700 1221300 2015500 53904 2320800 1393900 2217900 1599300 1561000 1654400 1632900 1951700 3 3 0 3 3 3 3 3 3 3 3 880140 1460200 0 1465600 941270 1591800 1025800 1017800 1067600 1129900 1407400 819110 1362500 25902 1496600 901540 1600900 1037400 1067200 1096400 1098900 1347200 2 2 0 2 2 2 2 2 2 2 2 432000 699300 0 819560 512930 594600 556550 477810 545050 549860 629310 402160 652970 28002 824230 492330 616990 561890 493860 557980 534060 604470 1 1 0 1 1 1 1 1 1 1 1 374540000 203130000 171410000 12443 620 11559 66237;66238;66239;66240;66241 80088;80089;80090;80091 80089 4 LQDLTLRDLEK Unmodified 1342.7456 0.7456298 3301 Q9Y4L1 HYOU1 Hypoxia up-regulated protein 1 yes yes 0 0 0 1 By MS/MS 5 0 1 1 60.929 61.096 3 0.072298 19166 20211116_3433_TMUAki_TMT10x_P_F5 46.132 25.124 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12444 3301 11560 66242 80092 80092 1 LQDSGTFQCVARDDVTGEEAR Unmodified 2353.0605 0.060451365 1617 Q13308;Q13308-5;Q13308-3;Q13308-4;Q13308-2;Q13308-6 PTK7 Inactive tyrosine-protein kinase 7 yes no 0 0 0 1 By MS/MS 3 0 1 1 47.584 47.235 3 5.8683E-17 16000 20211116_3441_TMUAki_TMT10x_S_F3 128.09 106.26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12445 1617 11561 66243 80093 80093 1 LQEACKDILLFK Unmodified 1476.801 0.80103619 886;660 P31323;P13861;P13861-2 PRKAR2B;PRKAR2A cAMP-dependent protein kinase type II-beta regulatory subunit;cAMP-dependent protein kinase type II-alpha regulatory subunit no no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 68.299 68.285 3 2.095E-05 21568 20211116_3436_TMUAki_TMT10x_P_F8 101.36 70.919 10395000 21227000 493890 13708000 20596000 37604000 20813000 31456000 27175000 28385000 22984000 9682000 19779000 1464900 14873000 19783000 36697000 21297000 32200000 27219000 27849000 22302000 3 3 3 3 3 3 3 3 3 3 3 7022400 14396000 376090 9786100 14701000 31027000 16550000 20916000 18088000 19079000 15343000 6541400 13416000 1040300 10627000 14166000 30070000 16739000 21721000 18237000 18709000 14886000 2 2 2 2 2 2 2 2 2 2 2 3372100 6830900 117810 3921800 5894300 6577800 4263100 10539000 9087000 9305900 7640900 3140600 6363100 424690 4246100 5617800 6626200 4558900 10479000 8982000 9139500 7415700 1 1 1 1 1 1 1 1 1 1 1 1061500000 565000000 496530000 12446 886;660 11562 66244;66245 80094;80095;80096 80094 3 LQEALDAEMLEDEAGGGGAGPGGACK Oxidation (M) 2518.0952 0.095181891 1874 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 1 0 By MS/MS By MS/MS 1 0 3 1 2 66.003 65.849 3;4 1.5195E-05 22700 20211116_3439_TMUAki_TMT10x_S_F1 65.213 49.792 9666300 17975000 129050 13663000 12885000 22151000 12858000 19144000 19172000 19076000 15750000 9000600 16756000 886360 14370000 12357000 21975000 13239000 19614000 19106000 18633000 15299000 5 5 2 5 5 5 5 5 5 5 5 4384800 8275100 0 5126600 5463500 14348000 6794200 9606100 10160000 10286000 7084300 4082200 7709800 314560 5590300 5267900 13941000 6926300 10027000 10080000 10018000 6929200 2 2 0 2 2 2 2 2 2 2 2 5281600 9699600 129050 8536900 7421800 7803100 6063500 9537700 9012000 8789200 8665500 4918500 9046400 571800 8780200 7088900 8033500 6312800 9587300 9026900 8614800 8370000 3 3 2 3 3 3 3 3 3 3 3 1650200000 761330000 888910000 12447 1874 11563 66246;66247;66248 80097;80098;80099;80100;80101 80101 2492 5 LQEALDAEMLEDEAGGGGAGPGGACK Unmodified 2502.1003 0.10026727 1874 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 72.732 72.677 3 4.7966E-19 25319 20211116_3439_TMUAki_TMT10x_S_F1 140.66 131.61 9975600 16534000 133910 16331000 11589000 15642000 12067000 9247200 8032900 9702000 12530000 9289100 15428000 951910 16665000 11131000 15834000 12090000 9738300 8508200 9456800 11948000 5 5 3 5 5 5 5 5 5 5 5 6289200 10281000 133910 10462000 6991500 11339000 7747200 5363400 4651100 5857300 7963600 5856900 9593700 656050 10673000 6730900 11363000 7723000 5769500 4984700 5700200 7579600 3 3 3 3 3 3 3 3 3 3 3 3686400 6253800 0 5869700 4597700 4302500 4319400 3883800 3381800 3844800 4566100 3432200 5834000 295860 5991700 4400000 4470300 4366900 3968800 3523400 3756600 4368100 2 2 0 2 2 2 2 2 2 2 2 1685400000 1086400000 598960000 12448 1874 11563 66249;66250 80102;80103;80104;80105;80106 80105 5 LQEDPNYSPQRFPNAQR Unmodified 2058.9872 0.98715049 1047 P46379;P46379-2;P46379-3;P46379-4;P46379-5 BAG6 Large proline-rich protein BAG6 yes no 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 39.124 39.256 3 5.5611E-10 10405 20211116_3433_TMUAki_TMT10x_P_F5 112.57 99.298 338010 503290 3880 693460 194460 232950 152010 670030 724550 450150 544960 314750 470330 29629 687120 185630 275540 174130 652600 705680 448700 531260 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 338010 503290 3880 693460 194460 232950 152010 670030 724550 450150 544960 314750 470330 29629 687120 185630 275540 174130 652600 705680 448700 531260 1 1 1 1 1 1 1 1 1 1 1 111350000 0 111350000 12449 1047 11564 66251;66252 80107;80108 80107 2 LQEEMLQREEAENTLQSFR Oxidation (M) 2366.1172 0.11723796 561 P08670 VIM Vimentin yes yes 0 0 1 1 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 54.786 54.566 3 1.0333E-23 15896 20211116_3428_TMUAki_TMT10x_P_F1 166.52 156.37 21895000 37853000 158470 35963000 24685000 34792000 24709000 27670000 30787000 28699000 29820000 20387000 35314000 1869400 36804000 23671000 35356000 25250000 28524000 31020000 27987000 28796000 10 10 4 10 10 10 10 10 10 10 10 8416600 14154000 0 13321000 10675000 18517000 10297000 10399000 11044000 10798000 10717000 7836100 13204000 661050 13726000 10222000 18361000 10488000 10995000 11191000 10529000 10348000 4 4 0 4 4 4 4 4 4 4 4 13479000 23699000 158470 22642000 14010000 16275000 14412000 17271000 19743000 17901000 19103000 12551000 22110000 1208400 23078000 13449000 16995000 14763000 17529000 19829000 17457000 18448000 6 6 4 6 6 6 6 6 6 6 6 4151600000 2406000000 1745600000 12450 561 11565 66253;66254;66255;66256;66257;66258 80109;80110;80111;80112;80113;80114;80115;80116;80117;80118 80109 524 10 LQEEMLQREEAENTLQSFR Unmodified 2350.1223 0.12232334 561 P08670 VIM Vimentin yes yes 0 0 0 1 By MS/MS 2 0 2 2 60.041 59.778 3 6.9564E-24 19601 20211116_3429_TMUAki_TMT10x_P_F2 169.85 125.28 6280700 9605100 12070 11071000 6167900 8896800 7707900 3714700 2931200 4030900 6700000 5847600 8968100 481620 11158000 5950400 9081100 7590100 4047800 3324700 3923800 6346500 2 2 1 2 2 2 2 2 2 2 2 6280700 9605100 12070 11071000 6167900 8896800 7707900 3714700 2931200 4030900 6700000 5847600 8968100 481620 11158000 5950400 9081100 7590100 4047800 3324700 3923800 6346500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 640680000 640680000 0 12451 561 11565 66259;66260 80119;80120;80121 80120 3 LQEEMLQREEAENTLQSFRQDVDNASLAR Oxidation (M) 3435.6325 0.6324739 561 P08670 VIM Vimentin yes yes 0 0 1 2 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 67.29 67.118 4 1.7985E-33 23051 20211116_3439_TMUAki_TMT10x_S_F1 162.02 149.82 8348300 14699000 30322 12633000 10636000 15499000 9390300 10287000 10608000 9395300 11057000 7772500 13708000 360630 13076000 10162000 15496000 9627800 10695000 10755000 9212700 10653000 3 3 1 3 3 3 3 3 3 3 3 5700500 9816700 30322 9091400 6053000 12071000 6608900 6415200 7440800 6131700 7617100 5307900 9157300 221920 9370500 5819700 11986000 6700400 6799500 7539600 6000200 7342500 2 2 1 2 2 2 2 2 2 2 2 2647900 4882600 0 3541400 4583200 3428000 2781400 3871700 3167400 3263600 3440100 2464600 4551000 138710 3705800 4342300 3509200 2927500 3895900 3215100 3212500 3310100 1 1 0 1 1 1 1 1 1 1 1 3534500000 2545900000 988620000 12452 561 11566 66261;66262;66263 80122;80123;80124 80124 524 3 LQEKEELR Unmodified 1043.5611 0.56112349 748;1505 P20700;Q03252 LMNB1;LMNB2 Lamin-B1;Lamin-B2 no no 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 33.735 33.59 3 0.010537 10435 20211116_3441_TMUAki_TMT10x_S_F3 72.434 30.243 1979600 3277000 10334 2856300 2967300 3433900 2524800 1845900 2051100 2011200 2565800 1843200 3056300 179480 2952300 2834200 3426900 2569500 1961900 2125600 1957400 2459200 2 2 1 2 2 2 2 2 2 2 2 1349200 2171300 0 1946900 2333000 2703800 1637100 1201500 1355000 1349600 1700600 1256200 2025200 117540 2013400 2219000 2674000 1688200 1301900 1403100 1312000 1629800 1 1 0 1 1 1 1 1 1 1 1 630340 1105800 10334 909400 634340 730120 887730 644410 696090 661580 865180 586980 1031100 61947 938930 615230 752930 881280 660030 722540 645420 829380 1 1 1 1 1 1 1 1 1 1 1 96914000 68819000 28095000 12453 748;1505 11567 66264;66265;66266 80125;80126 80126 2 LQEKEELRELNDR Unmodified 1670.8588 0.85876208 748;1505 P20700;Q03252 LMNB1;LMNB2 Lamin-B1;Lamin-B2 no no 0 0 0 2 By MS/MS By MS/MS 3.38 0.992 2 2 3 1 3 5 38.521 38.464 3;4 7.6495E-19 10092 20211116_3431_TMUAki_TMT10x_P_F4 181.58 149.7 10772000 17202000 98432 19993000 32271000 22894000 13461000 23570000 25057000 17197000 21812000 10030000 16062000 1254000 20242000 30474000 23159000 14997000 23739000 24869000 17058000 21142000 10 10 5 10 10 10 10 10 10 10 10 5650900 9029900 2266.3 10397000 26387000 18148000 8862600 12180000 14082000 8849200 11042000 5261300 8430900 731970 10626000 24859000 17876000 10068000 12586000 13989000 8779800 10746000 4 4 1 4 4 4 4 4 4 4 4 5121000 8172600 96166 9595600 5883300 4745600 4598600 11389000 10976000 8348200 10770000 4768800 7631200 522050 9616000 5614500 5283000 4929100 11154000 10879000 8278600 10396000 6 6 4 6 6 6 6 6 6 6 6 2107800000 1511400000 596460000 12454 748;1505 11568 66267;66268;66269;66270;66271;66272;66273;66274 80127;80128;80129;80130;80131;80132;80133;80134;80135;80136 80129 10 LQELEANPPSDVYLSSR Unmodified 1916.948 0.94797101 265 O60341;O60341-2 KDM1A Lysine-specific histone demethylase 1A yes no 0 0 0 0 By MS/MS 3 0 1 1 62.982 62.702 2 1.0356E-39 21270 20211116_3430_TMUAki_TMT10x_P_F3 200.19 161.01 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12455 265 11569 66275 80137 80137 1 LQELPDAVPHGEMPR Unmodified 1687.8352 0.83518986 912 P33992 MCM5 DNA replication licensing factor MCM5 yes yes 0 0 0 0 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 50.314 50.379 3 1.1813E-06 14990 20211116_3442_TMUAki_TMT10x_S_F4 106.79 97.736 6574700 10049000 187540 11459000 10166000 11414000 8271400 6902400 6613900 6201600 7957100 6122900 9381700 741050 11590000 9709800 11529000 8437800 7224600 6848700 6085600 7634400 3 3 2 3 3 3 3 3 3 3 3 4716200 6826200 187540 7754000 8417300 10069000 6908800 5013000 4630600 4325300 5592100 4392600 6373000 617620 7879400 8044400 10002000 7016200 5331400 4844700 4252600 5364700 2 2 2 2 2 2 2 2 2 2 2 1858500 3222500 0 3704800 1749000 1344800 1362600 1889500 1983300 1876300 2365100 1730200 3008700 123430 3710100 1665400 1527800 1421600 1893200 2004000 1833000 2269700 1 1 0 1 1 1 1 1 1 1 1 1151600000 882960000 268600000 12456 912 11570 66276;66277;66278;66279;66280 80138;80139;80140;80141;80142 80141 5 LQELPDAVPHGEMPR Oxidation (M) 1703.8301 0.83010449 912 P33992 MCM5 DNA replication licensing factor MCM5 yes yes 0 0 1 0 By MS/MS By MS/MS 3.25 0.829 1 1 2 1 3 44.011 44.01 3 0.00090032 11965 20211116_3431_TMUAki_TMT10x_P_F4 66.577 48.213 7168800 12447000 172940 14441000 10839000 10866000 7552500 11807000 12672000 9976200 11891000 6676000 11621000 791540 14538000 10320000 11311000 7991200 11902000 12639000 9818600 11495000 7 7 5 7 7 7 7 7 7 7 7 2362100 3988100 133640 4705400 6060300 6494400 3635400 3922600 4368900 3306300 4022400 2200300 3724000 372180 4776400 5758000 6447900 3837100 4099500 4400300 3254500 3891000 2 2 2 2 2 2 2 2 2 2 2 4806700 8458500 39299 9736000 4779000 4371600 3917100 7883900 8302600 6669900 7868600 4475700 7897400 419360 9761900 4562000 4863300 4154100 7802300 8239200 6564200 7604000 5 5 3 5 5 5 5 5 5 5 5 1671500000 720450000 951040000 12457 912 11570 66281;66282;66283;66284 80143;80144;80145;80146;80147;80148;80149 80143 1132 7 LQEQVTDLR Unmodified 1100.5826 0.58258722 641 P12270;P12270-2 TPR Nucleoprotein TPR yes no 0 0 0 0 By MS/MS By matching 3 0 2 1 1 42.083 41.953 2 0.0059064 12539 20211116_3430_TMUAki_TMT10x_P_F3 77.049 25.989 393300 601030 15489 743130 1107400 835570 511270 455880 495570 380990 572570 366310 561360 57044 749460 1047800 836980 549290 480430 507570 375180 549950 1 1 1 1 1 1 1 1 1 1 1 393300 601030 15489 743130 1107400 835570 511270 455880 495570 380990 572570 366310 561360 57044 749460 1047800 836980 549290 480430 507570 375180 549950 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 56799000 28857000 27942000 12458 641 11571 66285;66286 80150 80150 1 LQESPEDMPAGQTPHTVILFAHNDLVDK Oxidation (M) 3117.5077 0.5077143 911 P33991 MCM4 DNA replication licensing factor MCM4 yes yes 0 0 1 0 By MS/MS By MS/MS 4 0 2 1 1 60.463 60.462 4 2.0044E-09 18669 20211116_3431_TMUAki_TMT10x_P_F4 97.063 86.733 14510000 23888000 50074 25043000 15251000 24384000 15279000 14515000 16741000 16271000 18726000 13510000 22294000 1147800 25456000 14620000 24659000 15542000 15309000 17038000 15819000 18003000 4 4 2 4 4 4 4 4 4 4 4 10592000 16631000 9450.7 17152000 10786000 20157000 10653000 10150000 11888000 11808000 13382000 9861400 15520000 777380 17506000 10332000 20124000 10851000 10874000 12093000 11464000 12863000 3 3 1 3 3 3 3 3 3 3 3 3918400 7257200 40624 7890200 4465100 4227100 4626200 4365500 4853300 4462700 5343700 3648700 6774100 370380 7949800 4287800 4535300 4691200 4434400 4944800 4354500 5139700 1 1 1 1 1 1 1 1 1 1 1 3053700000 1827200000 1226500000 12459 911 11572 66287;66288 80151;80152;80153;80154 80151 1123 4 LQESPEDMPAGQTPHTVILFAHNDLVDK Unmodified 3101.5128 0.51279968 911 P33991 MCM4 DNA replication licensing factor MCM4 yes yes 0 0 0 0 By MS/MS By MS/MS 4.75 0.829 2 1 1 2 2 64.498 64.5 4 1.2259E-24 20846 20211116_3442_TMUAki_TMT10x_S_F4 142.45 130.25 9969900 16232000 9559.9 17814000 10524000 12907000 10427000 6698500 6417300 7272200 10475000 9282400 15152000 766880 17989000 10084000 13312000 10458000 7141100 6847900 7078800 9979200 3 3 1 3 3 3 3 3 3 3 3 6267300 10093000 9559.9 10987000 6588200 10107000 6761800 4165800 4254900 4798800 6656400 5835000 9421500 467450 11132000 6317800 10217000 6772100 4554300 4523600 4660600 6346900 2 2 1 2 2 2 2 2 2 2 2 3702700 6138900 0 6827600 3935500 2800100 3665500 2532700 2162300 2473400 3818500 3447500 5730800 299440 6856400 3766100 3095000 3685700 2586800 2324400 2418100 3632300 1 1 0 1 1 1 1 1 1 1 1 2971400000 1380000000 1591400000 12460 911 11572 66289;66290;66291;66292 80155;80156;80157 80157 3 LQETLSAADR Unmodified 1102.5619 0.56185177 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 40.52 40.575 2 8.7097E-09 13614 20211116_3441_TMUAki_TMT10x_S_F3 141.1 76.441 286360 475440 5314.3 491330 590670 622360 365520 296590 298640 301910 401090 266670 443690 32956 502070 561030 618610 380470 318150 310380 294640 383750 1 1 1 1 1 1 1 1 1 1 1 286360 475440 5314.3 491330 590670 622360 365520 296590 298640 301910 401090 266670 443690 32956 502070 561030 618610 380470 318150 310380 294640 383750 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 44638000 44638000 0 12461 1433 11573 66293;66294 80158;80159 80159 2 LQEVFGHAIK Unmodified 1140.6291 0.62914348 1218 P54136;P54136-2 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 54.093 54.117 3 1.4982E-07 15809 20211116_3436_TMUAki_TMT10x_P_F8 112.13 78.901 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12462 1218 11574 66295;66296 80160;80161 80160 2 LQEVLDYLTNSASLQMK Oxidation (M) 1967.9874 0.98739299 2268 Q8TBC4;Q8TBC4-2 UBA3 NEDD8-activating enzyme E1 catalytic subunit yes no 0 0 1 0 By MS/MS By MS/MS 2 0 2 1 1 81.2 81.189 3 1.0402E-07 28228 20211116_3429_TMUAki_TMT10x_P_F2 107.51 91.691 4485600 6313300 0 6734800 5102000 6674000 5143200 4577100 4135000 4369700 5151300 4175600 5892600 261810 6840000 4885400 6755700 5183600 4753300 4286900 4276200 4937900 2 2 0 2 2 2 2 2 2 2 2 2702000 3699700 0 4109800 2980300 5154100 3042800 2845700 2552600 2692200 3101700 2515000 3453700 116270 4179300 2852000 5134400 3068000 3005200 2637800 2635600 2975100 1 1 0 1 1 1 1 1 1 1 1 1783600 2613600 0 2625000 2121700 1519900 2100500 1731500 1582400 1677500 2049600 1660600 2438800 145540 2660600 2033400 1621300 2115700 1748100 1649100 1640600 1962700 1 1 0 1 1 1 1 1 1 1 1 2558900000 1015700000 1543200000 12463 2268 11575 66297;66298 80162;80163 80162 2650 2 LQFHDVAGDIFHQQCK Unmodified 1941.9156 0.91556545 626 P11413;P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 55.652 56.097 4 2.4245E-29 18295 20211116_3446_TMUAki_TMT10x_S_F7 193.47 176.59 26720000 44636000 268400 46097000 36551000 41555000 30664000 33457000 31556000 31664000 35179000 24881000 41656000 2554300 46855000 34912000 42432000 31439000 34372000 32192000 30998000 33824000 5 5 4 5 5 5 5 5 5 5 5 13264000 21204000 234390 22223000 21328000 29332000 17550000 16586000 16153000 15447000 17266000 12351000 19790000 1431000 22705000 20369000 29156000 17956000 17472000 16534000 15134000 16621000 3 3 3 3 3 3 3 3 3 3 3 13456000 23432000 34008 23874000 15223000 12224000 13113000 16872000 15402000 16216000 17913000 12529000 21866000 1123300 24150000 14542000 13276000 13483000 16900000 15658000 15865000 17203000 2 2 1 2 2 2 2 2 2 2 2 4298000000 2192200000 2105700000 12464 626 11576 66299;66300;66301 80164;80165;80166;80167;80168 80168 5 LQFHNVKPECLEAYNK Unmodified 1988.9778 0.97783136 320 O75323 GBAS Protein NipSnap homolog 2 yes yes 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 49.937 50.15 4 8.221E-11 14234 20211116_3436_TMUAki_TMT10x_P_F8 135.23 117.22 21578000 38851000 253950 42311000 33749000 40401000 23826000 31757000 27105000 28179000 30291000 20092000 36265000 2052100 42892000 32117000 41081000 24788000 32618000 27544000 27668000 29122000 5 5 3 5 5 5 5 5 5 5 5 13291000 23335000 253950 25754000 26553000 33068000 18202000 19847000 16391000 17782000 18526000 12377000 21783000 1524300 26212000 25266000 32939000 18844000 20785000 16830000 17452000 17805000 3 3 3 3 3 3 3 3 3 3 3 8287500 15516000 0 16557000 7195700 7332600 5623800 11910000 10714000 10397000 11766000 7715300 14482000 527730 16679000 6850700 8141800 5944200 11833000 10714000 10216000 11318000 2 2 0 2 2 2 2 2 2 2 2 3441300000 2254600000 1186700000 12465 320 11577 66302;66303;66304 80169;80170;80171;80172;80173 80170 5 LQFIADHCPTLR Unmodified 1469.7449 0.74491829 1592 Q13098;Q13098-5;Q13098-7 GPS1 COP9 signalosome complex subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 52.087 52.386 3 6.1808E-20 14548 20211116_3447_TMUAki_TMT10x_S_F8 229.56 184.25 10927000 17718000 95696 19070000 15644000 18565000 12483000 12767000 11655000 11614000 13832000 10174000 16538000 1051000 19351000 14926000 18814000 12802000 13239000 11970000 11390000 13276000 6 6 4 6 6 6 6 6 6 6 6 7246000 11275000 69560 12020000 12204000 15009000 9152200 8405500 7496400 7601100 8641700 6747200 10524000 724900 12254000 11628000 14957000 9391800 8855300 7739400 7456800 8300900 4 4 2 4 4 4 4 4 4 4 4 3680700 6443200 26136 7050400 3440400 3556400 3330700 4361800 4158300 4012400 5190500 3427200 6014500 326140 7097400 3297600 3856600 3409800 4383700 4230700 3933100 4975200 2 2 2 2 2 2 2 2 2 2 2 2414400000 1487900000 926500000 12466 1592 11578 66305;66306;66307;66308 80174;80175;80176;80177;80178;80179 80179 6 LQFIADHCPTLRVEALK Unmodified 2010.0721 0.072066091 1592 Q13098;Q13098-5;Q13098-7 GPS1 COP9 signalosome complex subunit 1 yes no 0 0 0 1 By MS/MS 2 0 1 1 61.823 61.585 4 1.8224E-21 19035 20211116_3440_TMUAki_TMT10x_S_F2 168.09 130.53 4412900 6642700 19145 7635400 4539700 3273300 3598100 3686700 2733700 3241800 4762400 4109000 6202000 385480 7654000 4330300 3613000 3672200 3714200 2890900 3184400 4531300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4412900 6642700 19145 7635400 4539700 3273300 3598100 3686700 2733700 3241800 4762400 4109000 6202000 385480 7654000 4330300 3613000 3672200 3714200 2890900 3184400 4531300 1 1 1 1 1 1 1 1 1 1 1 1069900000 0 1069900000 12467 1592 11579 66309 80180 80180 1 LQFLFAK Unmodified 865.50617 0.5061748 2076 Q7Z3K3;Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-6;Q7Z3K3-3 POGZ Pogo transposable element with ZNF domain yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 76.082 76.103 2 0.005007 25310 20211116_3433_TMUAki_TMT10x_P_F5 110.61 60.492 13530000 22842000 138660 21378000 18717000 26436000 17640000 20028000 19068000 18826000 19301000 12598000 21309000 1292400 21988000 17926000 26475000 17994000 20650000 19344000 18436000 18612000 3 3 1 3 3 3 3 3 3 3 3 7995600 13177000 138660 12398000 11426000 19850000 11738000 12092000 11590000 11171000 11064000 7445500 12292000 822430 12814000 10971000 19588000 11885000 12658000 11779000 10948000 10689000 2 2 1 2 2 2 2 2 2 2 2 5534200 9665600 0 8980000 7290700 6585600 5902600 7936400 7477300 7654500 8237700 5152700 9016500 469990 9173700 6954900 6887000 6108600 7992600 7564900 7487400 7923100 1 1 0 1 1 1 1 1 1 1 1 503920000 342450000 161470000 12468 2076 11580 66310;66311;66312 80181;80182;80183 80182 3 LQFTPQHK Unmodified 997.53451 0.53451481 2406 Q96AC1;Q96AC1-2;Q96AC1-3 FERMT2 Fermitin family homolog 2 yes no 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 35.671 35.942 3 0.024365 10797 20211116_3439_TMUAki_TMT10x_S_F1 55.567 38.131 624190 1022300 11336 1045100 797550 770950 718910 707490 745880 673690 892070 581270 953990 64742 1060500 763440 800880 734160 721520 762810 659350 856030 2 2 2 2 2 2 2 2 2 2 2 213300 346280 2801.7 341960 389400 425660 268660 259000 277190 248780 309490 198620 323100 22762 350410 370510 424730 279100 271440 282770 243400 297560 1 1 1 1 1 1 1 1 1 1 1 410890 676010 8534.2 703160 408150 345290 450240 448500 468690 424900 582580 382640 630890 41981 710070 392930 376150 455070 450080 480040 415960 558470 1 1 1 1 1 1 1 1 1 1 1 34682000 10436000 24246000 12469 2406 11581 66313;66314;66315 80184;80185 80185 2 LQGDANNLHGFEVDSR Unmodified 1770.8285 0.82852458 1176 P52434;P52434-3;P52434-5;P52434-2 POLR2H DNA-directed RNA polymerases I, II, and III subunit RPABC3 yes no 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 2 3 44.427 44.428 3 6.7579E-16 13642 20211116_3430_TMUAki_TMT10x_P_F3 157.98 139.57 6572700 11123000 48460 13372000 10591000 10703000 6985900 8318300 8538600 7561700 9606400 6120100 10388000 629440 13443000 10067000 11015000 7322700 8555200 8656500 7416300 9233900 6 6 5 6 6 6 6 6 6 6 6 2915300 4587200 23544 5641200 7072500 7507200 3917700 3221200 3387500 3093600 4121600 2714700 4284300 321870 5708400 6703600 7436400 4122400 3487600 3495500 3026600 3953200 2 2 2 2 2 2 2 2 2 2 2 3657400 6536000 24915 7731200 3518800 3196200 3068200 5097100 5151100 4468100 5484800 3405400 6103300 307570 7734800 3363000 3578500 3200300 5067600 5161100 4389700 5280700 4 4 3 4 4 4 4 4 4 4 4 1228200000 637590000 590570000 12470 1176 11582 66316;66317;66318;66319;66320 80186;80187;80188;80189;80190;80191 80186 6 LQGEVVAFDYQSK Unmodified 1482.7355 0.73545904 1885 Q3MHD2;Q3MHD2-2 LSM12 Protein LSM12 homolog yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 61.793 61.951 2;3 1.0229E-08 19545 20211116_3433_TMUAki_TMT10x_P_F5 122.42 99.544 4718800 7070500 0 7423000 5804800 10411000 5739200 5993200 5550000 5921600 5324500 4393300 6598800 358600 7592400 5561200 10322000 5819100 6314300 5646500 5786200 5143400 1 1 0 1 1 1 1 1 1 1 1 4718800 7070500 0 7423000 5804800 10411000 5739200 5993200 5550000 5921600 5324500 4393300 6598800 358600 7592400 5561200 10322000 5819100 6314300 5646500 5786200 5143400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 322670000 322670000 0 12471 1885 11583 66321;66322;66323;66324 80192;80193;80194;80195 80193 4 LQGINCGPDFTPSFANLGR Unmodified 2062.9895 0.98945867 1511 Q04637;Q04637-3;Q04637-8;Q04637-5;Q04637-4;Q04637-9;Q04637-6;Q04637-7 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.27 2.93 4 4 3 6 5 74.428 74.364 2;3 8.2687E-91 24249 20211116_3440_TMUAki_TMT10x_S_F2 331.44 292.69 32069000 56829000 275890 50640000 34606000 54831000 39083000 36258000 36996000 38517000 42331000 29859000 53005000 2745200 52161000 33298000 55182000 39344000 37870000 37918000 37524000 40670000 17 17 7 17 17 17 17 17 17 17 17 16874000 28542000 138470 26103000 17084000 36796000 20583000 19565000 19849000 20541000 22072000 15711000 26624000 1407100 26961000 16469000 36438000 20672000 20791000 20304000 20021000 21223000 9 9 3 9 9 9 9 9 9 9 9 15195000 28287000 137410 24537000 17522000 18035000 18500000 16693000 17147000 17976000 20259000 14148000 26381000 1338100 25200000 16828000 18744000 18672000 17079000 17614000 17503000 19447000 8 8 4 8 8 8 8 8 8 8 8 8291300000 5298700000 2992500000 12472 1511 11584 66325;66326;66327;66328;66329;66330;66331;66332;66333;66334;66335 80196;80197;80198;80199;80200;80201;80202;80203;80204;80205;80206;80207;80208;80209;80210;80211;80212 80210 17 LQGLPIVAGTMDIR Oxidation (M) 1498.8177 0.81774888 2949 Q9NTZ6 RBM12 RNA-binding protein 12 yes yes 0 0 1 0 By MS/MS 7 0 1 1 64.55 65.193 2 0.058309 21512 20211116_3435_TMUAki_TMT10x_P_F7 55.721 36.627 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12473 2949 11585 66336 80213 80213 3040 1 LQGLPIVAGTMDIR Unmodified 1482.8228 0.82283426 2949 Q9NTZ6 RBM12 RNA-binding protein 12 yes yes 0 0 0 0 By MS/MS 8 0 1 1 75.452 75.466 2 2.8868E-06 24542 20211116_3436_TMUAki_TMT10x_P_F8 96.334 53.47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12474 2949 11585 66337 80214 80214 1 LQGQLEQGDDTAAERLEK Unmodified 1999.9811 0.98106206 2241 Q8NE71;Q8NE71-2 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 46.622 46.45 3 1.5249E-41 14524 20211116_3430_TMUAki_TMT10x_P_F3 217.33 183.05 3387600 5190900 28519 7176700 7371800 6470900 3643000 6213000 7091300 4304100 5760600 3154400 4851100 360140 7170600 6976200 6629800 3997000 6272800 7016000 4282200 5598200 4 4 3 4 4 4 4 4 4 4 4 1703800 2587600 27209 3605100 6235500 5512000 2743700 3124600 3607100 2134600 2798600 1586600 2418300 230080 3634500 5892700 5444000 2992400 3267700 3603100 2125500 2724700 2 2 2 2 2 2 2 2 2 2 2 1683800 2603300 1310.8 3571600 1136300 958860 899250 3088400 3484200 2169500 2962000 1567800 2432800 130060 3536200 1083500 1185800 1004600 3005100 3412900 2156700 2873500 2 2 1 2 2 2 2 2 2 2 2 537940000 357240000 180700000 12475 2241 11586 66338;66339;66340;66341 80215;80216;80217;80218 80216 4 LQHAAELIK Unmodified 1021.592 0.59202969 2301 Q8WUM4;Q8WUM4-2 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 42.302 42.467 3 0.00036025 12576 20211116_3446_TMUAki_TMT10x_S_F7 85.533 53.118 600270 1189100 15221 1199800 706870 532130 625110 820510 732700 685680 974980 559020 1109600 65445 1213200 676650 589760 641680 815650 749290 675230 933030 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 600270 1189100 15221 1199800 706870 532130 625110 820510 732700 685680 974980 559020 1109600 65445 1213200 676650 589760 641680 815650 749290 675230 933030 1 1 1 1 1 1 1 1 1 1 1 42172000 0 42172000 12476 2301 11587 66342;66343 80219;80220 80220 2 LQHINPLLPACLNK Unmodified 1629.9025 0.90248157 2663 Q9BTE3;Q9BTE3-2;Q9BTE3-3 MCMBP Mini-chromosome maintenance complex-binding protein yes no 0 0 0 0 By MS/MS 4 0 1 1 59.227 59.357 3 5.0995E-07 18208 20211116_3431_TMUAki_TMT10x_P_F4 101.39 82.067 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12477 2663 11588 66344 80221 80221 1 LQHINPLLPACLNKEESK Unmodified 2103.1147 0.11465919 2663 Q9BTE3;Q9BTE3-2;Q9BTE3-3 MCMBP Mini-chromosome maintenance complex-binding protein yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 54.494 54.347 4 0.00011358 17846 20211116_3439_TMUAki_TMT10x_S_F1 77.899 67.431 9533100 17103000 225460 17237000 15146000 19091000 12332000 16173000 14068000 14342000 14300000 8877900 15959000 1079100 17603000 14465000 19268000 12709000 16536000 14244000 14083000 13787000 2 2 2 2 2 2 2 2 2 2 2 5307200 9848900 95626 9903800 11109000 15483000 9084300 9102200 7896500 8159000 7947300 4942200 9190300 610380 10183000 10606000 15286000 9283700 9548300 8087200 8007400 7664900 1 1 1 1 1 1 1 1 1 1 1 4225900 7253800 129840 7333200 4037000 3607600 3247300 7070400 6171000 6183300 6352600 3935700 6768900 468710 7419800 3858900 3982800 3425700 6987300 6156400 6075500 6122500 1 1 1 1 1 1 1 1 1 1 1 1571000000 1108800000 462190000 12478 2663 11589 66345;66346 80222;80223 80223 2 LQHTLQQVLDQR Unmodified 1477.8001 0.80012499 79 O00273;O00273-2 DFFA DNA fragmentation factor subunit alpha yes no 0 0 0 0 By MS/MS By matching 8 0 2 1 1 54.673 54.697 3 5.6676E-06 16039 20211116_3436_TMUAki_TMT10x_P_F8 103.97 89.003 3530700 5688900 61015 5822100 5701800 7052300 4708100 4470700 4072900 3820900 4636100 3287900 5308900 379990 5948500 5445900 7050500 4807900 4656300 4191200 3758400 4454900 2 2 2 2 2 2 2 2 2 2 2 3530700 5688900 61015 5822100 5701800 7052300 4708100 4470700 4072900 3820900 4636100 3287900 5308900 379990 5948500 5445900 7050500 4807900 4656300 4191200 3758400 4454900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 339100000 230850000 108250000 12479 79 11590 66347;66348 80224;80225 80224 2 LQHTLQQVLDQREEVR Unmodified 1991.0548 0.054836123 79 O00273;O00273-2 DFFA DNA fragmentation factor subunit alpha yes no 0 0 0 1 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 51.443 51.685 4 1.4914E-35 14114 20211116_3434_TMUAki_TMT10x_P_F6 209.13 187.38 4599200 7801100 0 7919300 5684900 5766100 4507100 6892000 6277000 5749100 6593100 4282000 7279700 359020 8038400 5418900 6032200 4688100 6916200 6319500 5661900 6350400 3 3 0 3 3 3 3 3 3 3 3 1142300 1707600 0 1856900 1982300 2592400 1401400 1560300 1493000 1332200 1487300 1063500 1593900 96338 1894800 1885400 2572400 1454800 1631700 1514600 1310500 1434900 1 1 0 1 1 1 1 1 1 1 1 3456800 6093400 0 6062300 3702600 3173700 3105700 5331600 4784000 4416800 5105900 3218400 5685700 262680 6143600 3533500 3459800 3233400 5284500 4804900 4351400 4915500 2 2 0 2 2 2 2 2 2 2 2 1184500000 599990000 584510000 12480 79 11591 66349;66350;66351 80226;80227;80228 80226 3 LQHVEDGVLSMQVASAR Oxidation (M) 1854.9258 0.92579578 1536 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 1 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 44.952 45.073 3 2.8004E-11 11547 20211116_3444_TMUAki_TMT10x_S_F5 134.08 118.28 4401100 6335400 94367 7852600 8281500 9189500 5121300 7017000 7557900 5725300 6607800 4098500 5917300 319760 7923800 7866300 9230400 5435400 7205400 7548500 5644800 6403700 5 5 3 5 5 5 5 5 5 5 5 3108600 4279600 67759 5259900 7084800 8149200 4148700 4614700 4990500 3842500 4367100 2894900 3997000 199460 5340000 6723500 8044200 4387800 4847200 5018000 3784600 4232100 3 3 2 3 3 3 3 3 3 3 3 1292500 2055800 26607 2592700 1196700 1040300 972580 2402300 2567400 1882800 2240700 1203500 1920200 120300 2583800 1142700 1186200 1047600 2358200 2530500 1860300 2171600 2 2 1 2 2 2 2 2 2 2 2 2535700000 1486000000 1049700000 12481 1536 11592 66352;66353;66354;66355;66356 80229;80230;80231;80232;80233 80233 2069 5 LQHVEDGVLSMQVASAR Unmodified 1838.9309 0.93088116 1536 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 53.539 53.72 3 1.5917E-05 15046 20211116_3444_TMUAki_TMT10x_S_F5 88.486 75.286 6708000 11629000 134480 13151000 6153000 5896400 5273500 7979500 7455400 6966300 9230600 6246800 10857000 673700 13200000 5885800 6501200 5462600 7977600 7552100 6845400 8849500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6708000 11629000 134480 13151000 6153000 5896400 5273500 7979500 7455400 6966300 9230600 6246800 10857000 673700 13200000 5885800 6501200 5462600 7977600 7552100 6845400 8849500 2 2 2 2 2 2 2 2 2 2 2 281630000 0 281630000 12482 1536 11592 66357;66358;66359 80234;80235;80236;80237 80235 4 LQIDEQLR Unmodified 1013.5506 0.55055881 1148;1532;1149 P51114;P51114-2;P51114-3;Q06787-8;Q06787-6;Q06787-5;Q06787;Q06787-7;Q06787-2;Q06787-4;Q06787-9;Q06787-3;P51116 FXR1;FMR1;FXR2 Fragile X mental retardation syndrome-related protein 1;Fragile X mental retardation protein 1;Fragile X mental retardation syndrome-related protein 2 no no 0 0 0 0 By MS/MS By MS/MS 2.71 1.03 1 2 2 2 4 3 46.012 45.964 2 0.0029408 15453 20211116_3441_TMUAki_TMT10x_S_F3 103.42 32.729 32398000 49409000 293230 56286000 55200000 46411000 33752000 36982000 42922000 36153000 44043000 30167000 46129000 3142700 56788000 52398000 47678000 35642000 38052000 43305000 35343000 42452000 6 6 2 6 6 6 6 6 6 6 6 17133000 25046000 275420 28642000 41256000 34368000 20788000 18640000 21261000 17909000 22295000 15954000 23384000 1939800 29051000 39055000 34306000 22171000 19724000 21645000 17521000 21475000 3 3 1 3 3 3 3 3 3 3 3 15265000 24362000 17808 27644000 13944000 12043000 12965000 18342000 21662000 18244000 21748000 14213000 22745000 1202800 27737000 13343000 13372000 13471000 18328000 21659000 17822000 20977000 3 3 1 3 3 3 3 3 3 3 3 1513100000 850640000 662440000 12483 1148;1532;1149 11593 66360;66361;66362;66363;66364;66365;66366 80238;80239;80240;80241;80242;80243 80242 6 LQIDVDGRK Unmodified 1042.5771 0.57710791 1552 Q08J23;Q08J23-2;Q08J23-3 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 0 0 0 1 By MS/MS By MS/MS 4.8 0.748 2 2 1 3 2 40.335 40.412 3 5.6894E-05 10705 20211116_3442_TMUAki_TMT10x_S_F4 100.92 69.542 8203100 12315000 44892 13133000 10172000 12180000 8870900 8715100 8945100 8554400 9812400 7638100 11494000 731470 13326000 9722300 12389000 9068500 9031000 9127600 8361300 9438800 3 3 1 3 3 3 3 3 3 3 3 5253400 7805200 44892 8251100 7092200 9646100 5969700 5583100 5972100 5657400 6249100 4891700 7284800 487110 8406800 6773700 9649500 6114100 5883800 6085300 5522300 6019700 2 2 1 2 2 2 2 2 2 2 2 2949700 4509500 0 4881900 3080000 2533900 2901200 3132000 2973000 2896900 3563300 2746400 4209300 244350 4918900 2948600 2739700 2954400 3147200 3042300 2839000 3419100 1 1 0 1 1 1 1 1 1 1 1 508570000 264360000 244210000 12484 1552 11594 66367;66368;66369;66370;66371 80244;80245;80246;80247;80248;80249 80248 6 LQIELGK Unmodified 799.48035 0.48035398 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.58 0.954 2 3 5 2 5 7 55.116 55.367 2 0.003268 15705 20211116_3444_TMUAki_TMT10x_S_F5 119.29 0 42258000 64559000 375550 74949000 51504000 49780000 43359000 37839000 36367000 39847000 51322000 39347000 60280000 3688000 75351000 49183000 51997000 44190000 39135000 37833000 38834000 49045000 6 6 3 6 6 6 6 6 6 6 6 18846000 27044000 0 31931000 28800000 31119000 19996000 15182000 14481000 15998000 20876000 17546000 25253000 1441100 32218000 27376000 31394000 20572000 16265000 15200000 15590000 19941000 2 2 0 2 2 2 2 2 2 2 2 23412000 37516000 375550 43018000 22704000 18661000 23363000 22656000 21885000 23850000 30445000 21801000 35027000 2246900 43133000 21807000 20603000 23618000 22870000 22633000 23244000 29105000 4 4 3 4 4 4 4 4 4 4 4 4456700000 2338100000 2118500000 12485 748 11595 66372;66373;66374;66375;66376;66377;66378;66379;66380;66381;66382;66383 80250;80251;80252;80253;80254;80255;80256;80257;80258;80259;80260 80256 11 LQIERLQMEIR Oxidation (M) 1443.7868 0.78678311 3397 yes yes 0 0 1 1 By MS/MS By MS/MS 6.64 1.44 2 1 3 2 6 8 6 39.449 39.621 3;4 0.039741 11033 20211116_3442_TMUAki_TMT10x_S_F4 50.149 21.173 + 68332000 123230000 1291100 103600000 189120000 200220000 89580000 149040000 101720000 95783000 114500000 63631000 114920000 8342300 108110000 178900000 196840000 95472000 152520000 103230000 95741000 110060000 17 17 13 16 17 17 16 17 16 17 17 44949000 81543000 784060 64944000 168080000 183060000 72868000 101090000 65863000 61987000 73776000 41857000 76025000 6039500 68777000 158800000 177340000 77702000 105750000 67416000 62150000 70924000 9 9 6 8 9 9 8 9 8 9 9 23382000 41691000 507000 38660000 21042000 17163000 16712000 47949000 35856000 33797000 40727000 21775000 38891000 2302800 39332000 20093000 19502000 17770000 46774000 35813000 33591000 39137000 8 8 7 8 8 8 8 8 8 8 8 39078000000 31758000000 7319700000 12486 3397 11596 66384;66385;66386;66387;66388;66389;66390;66391;66392;66393;66394;66395;66396;66397 80261;80262;80263;80264;80265;80266;80267 80264 3320 7 LQILHIHTAR Unmodified 1200.7091 0.70912513 1048 P46459;P46459-2 NSF Vesicle-fusing ATPase yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 38.024 37.776 4 6.6412E-05 12085 20211116_3441_TMUAki_TMT10x_S_F3 120.27 98.825 675390 1058800 0 1058800 928920 867540 755410 881560 909090 829180 936510 628740 987950 44958 1077300 885380 895900 780080 894040 919090 811980 902570 3 3 0 3 3 3 3 3 3 3 3 178970 285610 0 311520 420580 395610 256080 232100 249170 237840 258670 166600 266600 12603 317230 398770 394160 268140 244410 254130 232050 249240 1 1 0 1 1 1 1 1 1 1 1 496420 773160 0 747260 508340 471930 499330 649460 659910 591340 677840 462140 721350 32355 760040 486610 501750 511940 649630 664960 579930 653330 2 2 0 2 2 2 2 2 2 2 2 86218000 50134000 36083000 12487 1048 11597 66398;66399 80268;80269;80270 80269 3 LQILSLRDNDLISLPK Unmodified 1837.0673 0.067298289 1801 Q15404;Q15404-2 RSU1 Ras suppressor protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 77.116 77.075 3 5.8567E-10 26580 20211116_3429_TMUAki_TMT10x_P_F2 116.35 97.752 4456400 8356500 157780 7629600 7078100 5355100 5895000 5106400 4293400 4430700 5912000 4150500 7794800 553230 7800800 6766600 5590100 5991800 5184100 4495400 4355100 5653000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4456400 8356500 157780 7629600 7078100 5355100 5895000 5106400 4293400 4430700 5912000 4150500 7794800 553230 7800800 6766600 5590100 5991800 5184100 4495400 4355100 5653000 1 1 1 1 1 1 1 1 1 1 1 546080000 0 546080000 12488 1801 11598 66400;66401 80271;80272 80271 2 LQISHEAAACITGLR Unmodified 1638.8512 0.85117428 1546 Q08211;Q08211-2 DHX9 ATP-dependent RNA helicase A yes no 0 0 0 0 By MS/MS By MS/MS 5.55 2.78 2 2 3 4 5 6 50.338 50.37 2;3 1.6194E-33 13746 20211116_3447_TMUAki_TMT10x_S_F8 231.06 139.51 63753000 109510000 1023500 103580000 81208000 100750000 75601000 100690000 96226000 90851000 94327000 59367000 102170000 6348200 106040000 77778000 102810000 77617000 102090000 96923000 89135000 91053000 21 21 14 21 21 21 21 21 21 21 21 27099000 45442000 485760 43094000 40362000 60977000 37221000 42997000 40440000 38469000 40037000 25236000 42393000 2849800 44396000 38649000 60612000 38019000 44488000 40986000 37758000 38635000 8 8 6 8 8 8 8 8 8 8 8 36653000 64072000 537710 60482000 40846000 39775000 38381000 57697000 55786000 52382000 54290000 34131000 59772000 3498500 61646000 39129000 42200000 39599000 57599000 55938000 51378000 52418000 13 13 8 13 13 13 13 13 13 13 13 17916000000 10194000000 7721900000 12489 1546 11599 66402;66403;66404;66405;66406;66407;66408;66409;66410;66411;66412 80273;80274;80275;80276;80277;80278;80279;80280;80281;80282;80283;80284;80285;80286;80287;80288;80289;80290;80291;80292;80293;80294;80295 80294 23 LQIWDTAGQESFR Unmodified 1549.7525 0.75250609 1287;2297 P61019;P61019-2;Q8WUD1 RAB2A;RAB2B Ras-related protein Rab-2A;Ras-related protein Rab-2B no no 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 2 3 65.814 65.806 2 8.3026E-28 21136 20211116_3433_TMUAki_TMT10x_P_F5 205.12 167.03 16953000 30284000 111540 29760000 23186000 18918000 21074000 16176000 14129000 16704000 22241000 15785000 28257000 1471700 30235000 22178000 19879000 21272000 16601000 14966000 16292000 21204000 5 5 2 5 5 5 5 5 5 5 5 2928500 4764700 0 4985800 3975000 4950400 4162800 2684000 2219800 2560600 3483700 2726600 4446800 233900 5070200 3814700 4994400 4152500 2839600 2388200 2505900 3321400 1 1 0 1 1 1 1 1 1 1 1 14025000 25520000 111540 24774000 19211000 13967000 16911000 13492000 11909000 14144000 18757000 13058000 23810000 1237800 25165000 18363000 14885000 17119000 13761000 12578000 13787000 17883000 4 4 2 4 4 4 4 4 4 4 4 1603100000 648310000 954750000 12490 1287;2297 11600 66413;66414;66415;66416;66417 80296;80297;80298;80299;80300;80301;80302 80296 7 LQKEEEIEFLYNENTVR Unmodified 2153.0641 0.064063405 1002 P41252 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 0 0 0 1 By MS/MS By MS/MS 2.44 1.07 2 3 2 2 5 4 64.927 64.717 3;4 3.671E-36 23172 20211116_3441_TMUAki_TMT10x_S_F3 212.69 197.1 102810000 166570000 416010 155080000 131220000 170320000 131190000 129940000 122560000 132220000 137360000 95727000 155380000 8842600 159250000 125820000 171660000 132810000 134220000 125580000 129040000 132040000 17 17 8 17 17 17 17 17 17 17 17 47425000 75863000 243100 70598000 58538000 107650000 64250000 60149000 57232000 62508000 62002000 44157000 70768000 4095000 72947000 56273000 106320000 64656000 63624000 58700000 60951000 59663000 8 8 2 8 8 8 8 8 8 8 8 55386000 90706000 172910 84485000 72686000 62664000 66943000 69794000 65326000 69709000 75354000 51569000 84615000 4747700 86302000 69545000 65344000 68153000 70599000 66885000 68085000 72381000 9 9 6 9 9 9 9 9 9 9 9 12296000000 6967400000 5328200000 12491 1002 11601 66418;66419;66420;66421;66422;66423;66424;66425;66426 80303;80304;80305;80306;80307;80308;80309;80310;80311;80312;80313;80314;80315;80316;80317;80318;80319 80316 17 LQKPNAAIR Unmodified 1009.6033 0.60326308 1137 P50502;Q8IZP2 ST13;ST13P4 Hsc70-interacting protein;Putative protein FAM10A4 yes no 0 0 0 1 By MS/MS 2 0 1 1 33.969 33.747 3 0.081461 8980 20211116_3429_TMUAki_TMT10x_P_F2 39.622 15.533 986690 1627500 9128 1520900 2109400 2221800 1363000 1128300 1287800 999050 1363600 918780 1518200 106030 1569600 2004400 2195600 1419300 1198500 1316100 981050 1313100 1 1 1 1 1 1 1 1 1 1 1 986690 1627500 9128 1520900 2109400 2221800 1363000 1128300 1287800 999050 1363600 918780 1518200 106030 1569600 2004400 2195600 1419300 1198500 1316100 981050 1313100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 51365000 51365000 0 12492 1137 11602 66427 80320 80320 1 LQLDSPEDAEFIVAK Unmodified 1673.8512 0.85121708 203 O43242;O43242-2 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes no 0 0 0 0 By MS/MS By MS/MS 2.93 1.16 2 3 4 4 1 6 8 75.454 75.37 2;3 2.6109E-43 25202 20211116_3442_TMUAki_TMT10x_S_F4 259.7 223.11 46387000 78612000 439060 75541000 55098000 71848000 54959000 50117000 47575000 51175000 59325000 43193000 73342000 4279400 77226000 52848000 72933000 55526000 52084000 49139000 49937000 56865000 17 17 11 17 17 17 17 17 17 17 17 26230000 42997000 218950 41772000 27789000 48867000 30286000 27697000 26245000 28240000 32528000 24424000 40116000 2345100 42807000 26718000 48869000 30465000 29245000 27100000 27558000 31184000 9 9 6 9 9 9 9 9 9 9 9 20157000 35615000 220110 33769000 27309000 22981000 24673000 22420000 21329000 22935000 26797000 18769000 33226000 1934400 34419000 26129000 24064000 25061000 22839000 22039000 22379000 25681000 8 8 5 8 8 8 8 8 8 8 8 8411900000 4611900000 3799900000 12493 203 11603 66428;66429;66430;66431;66432;66433;66434;66435;66436;66437;66438;66439;66440;66441 80321;80322;80323;80324;80325;80326;80327;80328;80329;80330;80331;80332;80333;80334;80335;80336;80337;80338;80339 80337 19 LQLEACETR Unmodified 1118.539 0.53900784 1775 Q15149;Q15149-4;Q15149-2;Q15149-6;Q15149-9;Q15149-7;Q15149-8;Q15149-5;Q15149-3 PLEC Plectin yes no 0 0 0 0 By MS/MS 3 0 1 1 37.172 37.198 2 0.0050351 10731 20211116_3430_TMUAki_TMT10x_P_F3 78.556 50.45 129410 199480 446.21 210860 174350 214870 137190 81976 104000 85622 140890 120500 186180 11774 214370 166270 215660 140070 90164 108560 83473 134760 1 1 1 1 1 1 1 1 1 1 1 129410 199480 446.21 210860 174350 214870 137190 81976 104000 85622 140890 120500 186180 11774 214370 166270 215660 140070 90164 108560 83473 134760 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6504000 6504000 0 12494 1775 11604 66442 80340 80340 1 LQLEAIHK Unmodified 950.55492 0.5549159 2295 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 yes yes 0 0 0 0 By MS/MS 6 0 1 1 45.005 45.08 3 0.086042 11456 20211116_3434_TMUAki_TMT10x_P_F6 41.724 17.521 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12495 2295 11605 66443 80341 80341 1 LQLEIDQKK Unmodified 1113.6394 0.63937381 3226 Q9Y266 NUDC Nuclear migration protein nudC yes yes 0 0 0 1 By MS/MS 6 0 1 1 48.126 48.218 3 0.0012265 12726 20211116_3434_TMUAki_TMT10x_P_F6 79.201 44.995 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12496 3226 11606 66444 80342 80342 1 LQLEYCSLSAASCEPLASVLR Unmodified 2366.161 0.16101703 651 P13489 RNH1 Ribonuclease inhibitor yes yes 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 78.613 78.622 3 2.951E-07 27710 20211116_3446_TMUAki_TMT10x_S_F7 83.905 72.961 4744500 7523300 0 7443800 5928000 5080200 6452700 4599100 4871500 5123700 5634400 4417100 7019800 345600 7564200 5693100 5310400 6468800 4716000 5052200 4982500 5411700 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4744500 7523300 0 7443800 5928000 5080200 6452700 4599100 4871500 5123700 5634400 4417100 7019800 345600 7564200 5693100 5310400 6468800 4716000 5052200 4982500 5411700 2 2 0 2 2 2 2 2 2 2 2 1558700000 0 1558700000 12497 651 11607 66445;66446 80343;80344 80343 2 LQLLSNLFHGMDK Oxidation (M) 1530.7864 0.78644876 2056 Q7L2H7 EIF3M Eukaryotic translation initiation factor 3 subunit M yes yes 0 0 1 0 By MS/MS By MS/MS 3 0 2 1 1 75.981 75.854 3 0.0014761 27592 20211116_3441_TMUAki_TMT10x_S_F3 68.972 42.003 4664000 8507900 47624 8632200 5097100 8730300 5691800 4848300 5124800 5414500 5886200 4342700 7939200 404590 8799000 4903000 8800500 5724800 5142300 5265400 5264800 5654700 2 2 1 2 2 2 2 2 2 2 2 2412100 4266400 47624 4169000 3007700 5653900 2955800 2459200 2641100 2618000 3043400 2246300 3980600 252710 4282100 2885500 5596400 2991200 2666300 2715000 2550400 2923400 1 1 1 1 1 1 1 1 1 1 1 2251800 4241500 0 4463200 2089400 3076400 2736000 2389100 2483600 2796500 2842800 2096400 3958600 151890 4516800 2017500 3204100 2733600 2476000 2550500 2714400 2731200 1 1 0 1 1 1 1 1 1 1 1 763420000 399520000 363890000 12498 2056 11608 66447;66448 80345;80346 80346 2570 2 LQLLTGEHRPEDEEELEK Unmodified 2164.0648 0.064791686 1639 Q13505;Q13505-3;Q13505-2 MTX1 Metaxin-1 yes no 0 0 0 1 By MS/MS By MS/MS 3.6 1.02 1 1 2 1 2 3 50.739 50.705 4 7.212E-08 15134 20211116_3442_TMUAki_TMT10x_S_F4 103.41 85.274 6312200 10334000 120810 13118000 7745800 8389400 5950400 7836500 7702200 6846200 8947100 5878200 9652800 655990 13115000 7389200 8825800 6183900 7965900 7803200 6727200 8592400 3 3 3 3 3 3 3 3 3 3 3 2486100 3969600 75450 4741500 4699800 5509100 3327600 3180900 3161900 2867100 3643300 2315400 3707000 307430 4794100 4476400 5512700 3442000 3342200 3241000 2813100 3499600 1 1 1 1 1 1 1 1 1 1 1 3826100 6364000 45359 8376200 3046000 2880300 2622800 4655700 4540300 3979100 5303800 3562800 5945800 348560 8320800 2912800 3313100 2741900 4623700 4562200 3914100 5092800 2 2 2 2 2 2 2 2 2 2 2 1160000000 661280000 498670000 12499 1639 11609 66449;66450;66451;66452;66453 80347;80348;80349 80349 3 LQLNYLGNYIPR Unmodified 1462.7932 0.79324869 1498 Q02809;Q02809-2 PLOD1 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 yes no 0 0 0 0 By MS/MS 4 0 1 1 75.143 75.173 2 2.1976E-06 24704 20211116_3431_TMUAki_TMT10x_P_F4 106.18 68.002 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12500 1498 11610 66454 80350 80350 1 LQLPVWEYK Unmodified 1174.6386 0.63864553 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 3.35 3 1 2 4 2 73.983 73.994 2 6.0697E-06 23964 20211116_3436_TMUAki_TMT10x_P_F8 160.59 89.085 62876000 95587000 820210 109250000 67752000 76988000 71013000 33394000 28315000 38362000 65150000 58549000 89244000 5922900 110010000 65087000 79440000 70539000 36301000 31981000 37262000 61707000 6 6 5 6 6 6 6 6 6 6 6 46058000 67890000 556000 77155000 50946000 64974000 53048000 23637000 20305000 27783000 45907000 42887000 63383000 4282500 77874000 48928000 66014000 52686000 26243000 22998000 26964000 43493000 4 4 3 4 4 4 4 4 4 4 4 16818000 27697000 264210 32097000 16806000 12013000 17964000 9756700 8010200 10579000 19242000 15661000 25860000 1640400 32133000 16160000 13426000 17853000 10058000 8983200 10298000 18215000 2 2 2 2 2 2 2 2 2 2 2 4187700000 2512500000 1675300000 12501 196 11611 66455;66456;66457;66458;66459;66460 80351;80352;80353;80354;80355;80356;80357 80355 7 LQLPVWEYKDR Unmodified 1445.7667 0.76669959 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 61.398 61.586 3 6.829E-06 18820 20211116_3436_TMUAki_TMT10x_P_F8 115.57 66.935 8437500 15882000 191160 11100000 14846000 24537000 15893000 14367000 12695000 12727000 14941000 7857600 14801000 967430 11863000 14273000 23939000 15967000 15072000 13135000 12498000 14344000 2 2 2 2 2 2 2 2 2 2 2 8437500 15882000 191160 11100000 14846000 24537000 15893000 14367000 12695000 12727000 14941000 7857600 14801000 967430 11863000 14273000 23939000 15967000 15072000 13135000 12498000 14344000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 647760000 647760000 0 12502 196 11612 66461;66462 80358;80359;80360 80359 3 LQLQEQLQAETELCAEAEELR Unmodified 2500.2115 0.21153228 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 3 2 1 97.624 97.633 3 2.2947E-08 32894 20211116_3428_TMUAki_TMT10x_P_F1 100.76 91.477 96247 147150 3614.8 109120 98524 167520 114090 120580 113890 118830 120750 89642 137170 10049 114880 95072 166000 114910 124910 116120 116130 116270 4 4 2 4 4 4 4 4 4 4 4 61552 91848 2341.7 67118 54182 121630 72202 82975 71398 80376 77757 57327 85612 7070.4 71034 52540 119680 72271 86236 72896 78607 74813 2 2 1 2 2 2 2 2 2 2 2 34695 55305 1273 42006 44341 45889 41890 37604 42492 38451 42993 32314 51556 2978.4 43850 42532 46323 42637 38676 43220 37518 41458 2 2 1 2 2 2 2 2 2 2 2 3252500 2371000 881490 12503 934 11613 66463;66464;66465 80361;80362;80363;80364;80365 80362 5 LQLRDMEMEQK 2 Oxidation (M) 1451.6748 0.6748494 3390 yes yes 0 0 2 1 By MS/MS By MS/MS 2.5 0.5 2 2 1 3 45.877 45.627 3 0.099809 15338 20211116_3441_TMUAki_TMT10x_S_F3 41.283 19.41 + 10062000 16211000 34219 19972000 10756000 10676000 7997100 15324000 15750000 12801000 14920000 9368800 15141000 875700 19970000 10246000 11554000 8496000 15271000 15654000 12606000 14418000 6 6 5 6 6 6 6 6 6 6 6 2141500 3301300 14619 4065600 4984900 5107000 2937800 3029600 3023900 2711100 2891500 1994000 3083300 230990 4109100 4729200 5091700 3089600 3175600 3067800 2661000 2793400 1 1 1 1 1 1 1 1 1 1 1 7920300 12910000 19600 15907000 5771000 5569100 5059300 12295000 12726000 10090000 12028000 7374800 12058000 644710 15861000 5516800 6462200 5406400 12095000 12586000 9945300 11625000 5 5 4 5 5 5 5 5 5 5 5 1392000000 619260000 772770000 12504 3390 11614 66466;66467;66468;66469 80366 80366 3315;3316 1 LQLSLADFRR Unmodified 1217.6881 0.68805534 100 O00541;O00541-2 PES1 Pescadillo homolog yes no 0 0 0 1 By MS/MS 3 0 1 1 57.363 56.96 3 1.6409E-05 19972 20211116_3441_TMUAki_TMT10x_S_F3 102.4 72.857 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12505 100 11615 66470 80367 80367 1 LQLVASPCLTSRLVLMLFTLK Unmodified 2402.3793 0.37933007 3383 yes no 0 0 0 1 By MS/MS By MS/MS 6 0 4 2 2 58.336 58.385 5 0.0087621 16881 20211116_3434_TMUAki_TMT10x_P_F6 50.425 24.867 + 90529000 149700000 672490 129590000 98763000 94804000 81828000 83469000 61498000 67446000 84091000 84291000 139620000 7653400 133100000 94275000 98470000 83257000 84958000 64255000 66531000 80420000 8 8 4 8 8 8 8 8 8 8 8 23928000 38716000 41666 33649000 30738000 40488000 26592000 21784000 17344000 18607000 22205000 22279000 36107000 2027500 34788000 29365000 40404000 26904000 22997000 18222000 18303000 21270000 3 3 1 3 3 3 3 3 3 3 3 66600000 110990000 630820 95939000 68025000 54316000 55235000 61685000 44154000 48839000 61885000 62012000 103510000 5625900 98314000 64910000 58067000 56353000 61960000 46033000 48228000 59150000 5 5 3 5 5 5 5 5 5 5 5 7034100000 3711900000 3322100000 12506 3383 11616 66471;66472;66473;66474 80368;80369;80370 80368 3 LQLWDTAGQER Unmodified 1315.6521 0.65206377 742;743 P20340;Q9NRW1;Q9NRW1-2;Q14964;P20340-2;P20340-4 RAB6A;RAB6B;RAB39A Ras-related protein Rab-6A;Ras-related protein Rab-6B;Ras-related protein Rab-39A no no 0 0 0 0 By MS/MS By MS/MS 4.43 0.495 4 3 4 3 55.673 55.774 2 2.0838E-23 16707 20211116_3433_TMUAki_TMT10x_P_F5 248.09 0 44857000 73203000 272150 89424000 75761000 70712000 53456000 54635000 50448000 50068000 64496000 41766000 68366000 4103600 89802000 72079000 72829000 55296000 56223000 51953000 49087000 61782000 9 9 3 9 9 9 9 9 9 9 9 24198000 38344000 55006 47048000 54432000 54803000 38670000 29026000 27116000 26030000 34148000 22529000 35811000 2268700 47498000 51785000 54772000 39691000 30723000 28341000 25546000 32724000 5 5 1 5 5 5 5 5 5 5 5 20659000 34859000 217150 42376000 21329000 15909000 14786000 25609000 23333000 24037000 30348000 19237000 32555000 1834900 42304000 20294000 18057000 15605000 25501000 23612000 23541000 29059000 4 4 2 4 4 4 4 4 4 4 4 5334100000 2997700000 2336500000 12507 742;743 11617 66475;66476;66477;66478;66479;66480;66481 80371;80372;80373;80374;80375;80376;80377;80378;80379 80374 9 LQMEAPHIIVGTPGR Oxidation (M) 1633.861 0.86101068 1277 P60842;P60842-2 EIF4A1 Eukaryotic initiation factor 4A-I yes no 0 0 1 0 By MS/MS By MS/MS 5.88 1.37 1 2 3 5 4 2 9 8 43.332 43.549 2;3 1.438E-14 12010 20211116_3433_TMUAki_TMT10x_P_F5 152.5 122.57 30578000 48237000 234710 55922000 62837000 63512000 35762000 43007000 42879000 35439000 42848000 28470000 45039000 2859800 56621000 59562000 63773000 37911000 44535000 43310000 34923000 41335000 21 21 7 21 21 21 21 21 21 21 21 24703000 38309000 154870 44513000 57251000 58925000 30879000 34870000 34889000 28325000 34226000 23000000 35769000 2372700 45188000 54224000 58599000 32825000 36472000 35294000 27933000 33038000 13 13 4 13 13 13 13 13 13 13 13 5874800 9928600 79844 11409000 5585300 4587000 4882700 8136900 7990200 7113900 8621700 5470000 9270000 487100 11433000 5338100 5173500 5085600 8063200 8015100 6990000 8297500 8 8 3 8 8 8 8 8 8 8 8 31266000000 19995000000 11270000000 12508 1277 11618 66482;66483;66484;66485;66486;66487;66488;66489;66490;66491;66492;66493;66494;66495;66496;66497;66498 80380;80381;80382;80383;80384;80385;80386;80387;80388;80389;80390;80391;80392;80393;80394;80395;80396;80397;80398;80399;80400;80401 80383 1732 22 LQMEAPHIIVGTPGR Unmodified 1617.8661 0.86609606 1277 P60842;P60842-2 EIF4A1 Eukaryotic initiation factor 4A-I yes no 0 0 0 0 By MS/MS By MS/MS 7 0.707 2 4 2 4 4 52.268 52.57 2;3 2.0177E-27 16909 20211116_3446_TMUAki_TMT10x_S_F7 174.39 124.67 64086000 101900000 2365400 119210000 80665000 85912000 71764000 60473000 54844000 58788000 81320000 59688000 95145000 7724100 119890000 77263000 89003000 72735000 62718000 57474000 57485000 77626000 11 11 9 11 11 11 11 11 11 11 11 28091000 39685000 915040 52300000 42046000 53191000 37154000 21900000 20050000 21607000 33603000 26162000 37077000 3351400 52477000 40246000 53430000 37413000 23836000 21627000 21115000 31996000 5 5 3 5 5 5 5 5 5 5 5 35996000 62212000 1450400 66908000 38619000 32720000 34610000 38574000 34794000 37182000 47716000 33526000 58068000 4372700 67414000 37016000 35573000 35322000 38882000 35847000 36371000 45630000 6 6 6 6 6 6 6 6 6 6 6 23332000000 11703000000 11630000000 12509 1277 11618 66499;66500;66501;66502;66503;66504;66505;66506 80402;80403;80404;80405;80406;80407;80408;80409;80410;80411;80412;80413 80411 12 LQMEQQQQLQQR Oxidation (M) 1572.7678 0.76783858 2940 Q9NS69 TOMM22 Mitochondrial import receptor subunit TOM22 homolog yes yes 0 0 1 0 By MS/MS 3 0 1 1 32.03 31.785 3 0.00051674 9760 20211116_3441_TMUAki_TMT10x_S_F3 80.245 63.302 111160 204710 1054.3 228200 121900 83527 106480 139230 157100 117460 187250 103510 191100 10349 228980 116560 95267 110380 138100 158670 115610 179700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 111160 204710 1054.3 228200 121900 83527 106480 139230 157100 117460 187250 103510 191100 10349 228980 116560 95267 110380 138100 158670 115610 179700 1 1 1 1 1 1 1 1 1 1 1 23143000 0 23143000 12510 2940 11619 66507 80414 80414 3031 1 LQNALNEQRVEFATLQEALAHALTEK Unmodified 2936.5356 0.53558403 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 1 By matching By MS/MS 7 0 2 1 1 79.616 79.652 4 2.9071E-12 28111 20211116_3446_TMUAki_TMT10x_S_F7 114.83 100.22 2464200 3520100 6690.3 3114600 2622800 2507700 2674800 2380600 2385400 2216300 2470000 2294500 3283100 212760 3197000 2516500 2589300 2701500 2421900 2442400 2171300 2380100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2464200 3520100 6690.3 3114600 2622800 2507700 2674800 2380600 2385400 2216300 2470000 2294500 3283100 212760 3197000 2516500 2589300 2701500 2421900 2442400 2171300 2380100 1 1 1 1 1 1 1 1 1 1 1 1435600000 502230000 933340000 12511 1741 11620 66508;66509 80415 80415 1 LQNELDNVSTLLEEAEK Unmodified 1943.9688 0.96876604 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS By MS/MS 1.71 0.7 3 3 1 6 1 59.322 59.267 2;3 1.1406E-43 26280 20211116_3428_TMUAki_TMT10x_P_F1 236.55 204.71 15336000 24190000 315640 23705000 13990000 23678000 16183000 11472000 11403000 13792000 17134000 14282000 22570000 1525900 24217000 13487000 23849000 16153000 12349000 12013000 13374000 16352000 5 5 3 5 5 5 5 5 5 5 5 15336000 24190000 315640 23705000 13990000 23678000 16183000 11472000 11403000 13792000 17134000 14282000 22570000 1525900 24217000 13487000 23849000 16153000 12349000 12013000 13374000 16352000 5 5 3 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2195100000 2195100000 0 12512 935 11621 66510;66511;66512;66513;66514;66515;66516 80416;80417;80418;80419;80420;80421;80422 80417 7 LQNELDNVSTLLEEAEKK Unmodified 2072.0637 0.063729054 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 1 By MS/MS By MS/MS 2.25 0.829 1 1 2 1 3 78.754 78.702 3 6.6623E-06 27731 20211116_3430_TMUAki_TMT10x_P_F3 91.926 75.619 11741000 19343000 30707 18235000 14017000 16056000 14088000 11616000 11857000 13274000 15059000 10932000 18045000 937600 18648000 13437000 16391000 14217000 12084000 12274000 12896000 14428000 3 3 1 3 3 3 3 3 3 3 3 4306800 6732600 0 6566400 4283800 7947200 4986500 4137000 4211900 5028700 5235700 4009500 6281600 293590 6731200 4121100 7925200 4997300 4425200 4355100 4874500 5019000 1 1 0 1 1 1 1 1 1 1 1 7434300 12610000 30707 11668000 9732900 8108900 9101500 7479500 7645600 8245700 9823800 6922000 11763000 644000 11917000 9316200 8466200 9220000 7659300 7919100 8021600 9409200 2 2 1 2 2 2 2 2 2 2 2 1950900000 872880000 1078000000 12513 935 11622 66517;66518;66519;66520 80423;80424;80425;80426 80423 4 LQNGLQALLISDLSNMEGK Unmodified 2043.067 0.067040293 251 O43847;O43847-2 NRD1 Nardilysin yes no 0 0 0 0 By MS/MS 8 0 1 1 81.217 81.214 3 8.0515E-05 26286 20211116_3447_TMUAki_TMT10x_S_F8 71.872 59.706 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12514 251 11623 66521 80427 80427 1 LQPFATEADVEEALR Unmodified 1687.8417 0.84171503 912 P33992 MCM5 DNA replication licensing factor MCM5 yes yes 0 0 0 0 By MS/MS By MS/MS 2.65 1.23 4 4 4 4 1 8 9 73.282 73.168 2;3 4.2851E-51 23337 20211116_3428_TMUAki_TMT10x_P_F1 279.75 226.07 78025000 129700000 729260 124870000 80637000 123850000 94417000 72607000 72517000 78716000 94887000 72649000 121000000 6561500 127720000 77668000 125090000 94372000 76591000 75525000 76626000 90841000 24 24 12 24 24 24 24 24 24 24 24 52175000 83402000 500990 81177000 50328000 90781000 59304000 46881000 46552000 50138000 60468000 48581000 77815000 4438700 83115000 48492000 90903000 59290000 49978000 48411000 48833000 57900000 15 15 8 15 15 15 15 15 15 15 15 25849000 46294000 228280 43696000 30308000 33073000 35113000 25726000 25964000 28578000 34419000 24068000 43187000 2122800 44602000 29177000 34183000 35082000 26613000 27115000 27793000 32941000 9 9 4 9 9 9 9 9 9 9 9 17099000000 8861200000 8237400000 12515 912 11624 66522;66523;66524;66525;66526;66527;66528;66529;66530;66531;66532;66533;66534;66535;66536;66537;66538 80428;80429;80430;80431;80432;80433;80434;80435;80436;80437;80438;80439;80440;80441;80442;80443;80444;80445;80446;80447;80448;80449;80450;80451 80428 24 LQPGSVPK Unmodified 824.4756 0.47560295 2572 Q99439;Q99439-2 CNN2 Calponin-2 yes no 0 0 0 0 By MS/MS 7 0 1 1 37.449 37.887 2 0.0020762 10507 20211116_3435_TMUAki_TMT10x_P_F7 122.52 45.459 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12516 2572 11625 66539 80452 80452 1 LQPHPGLEK Unmodified 1017.5607 0.56072956 1687 Q14165 MLEC Malectin yes yes 0 0 0 0 By MS/MS 5 0 1 1 33.222 33.4 3 0.0042042 6834 20211116_3444_TMUAki_TMT10x_S_F5 67.726 29.369 459270 726410 11637 809180 382420 404480 533930 416730 464280 396950 591400 427720 678130 47846 813600 371200 437300 531510 422490 479890 388500 566570 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 459270 726410 11637 809180 382420 404480 533930 416730 464280 396950 591400 427720 678130 47846 813600 371200 437300 531510 422490 479890 388500 566570 2 2 2 2 2 2 2 2 2 2 2 6953200 0 6953200 12517 1687 11626 66540 80453;80454 80453 2 LQPHPGLEKKEEEEEEEEYDEGSNLK Unmodified 3084.4047 0.4047486 1687 Q14165 MLEC Malectin yes yes 0 0 0 2 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 47.019 46.907 5 5.5423E-06 14290 20211116_3429_TMUAki_TMT10x_P_F2 80.171 68.386 5325600 10093000 88341 10272000 8618100 11366000 6939800 7951800 8643300 7340000 7806200 4958800 9418900 503250 10483000 8222300 11435000 7179900 8238900 8688800 7193800 7556200 4 4 3 4 4 4 4 4 4 4 4 3285900 6271100 75540 6331600 6732600 9634600 5410100 5015100 5522200 4727400 4941500 3059500 5851800 324370 6504400 6422500 9507600 5560300 5323500 5592400 4628800 4784900 2 2 1 2 2 2 2 2 2 2 2 2039700 3822400 12801 3940200 1885600 1731800 1529700 2936700 3121100 2612600 2864600 1899300 3567100 178880 3978300 1799800 1927500 1619500 2915400 3096500 2565000 2771400 2 2 2 2 2 2 2 2 2 2 2 1219600000 684860000 534740000 12518 1687 11627 66541;66542;66543;66544 80455;80456 80455 2 LQPHPQLSPEIR Unmodified 1413.7728 0.7728476 1669 Q13895 BYSL Bystin yes yes 0 0 0 0 By MS/MS By MS/MS 5.75 0.433 2 6 6 2 32.427 32.474 3 2.3292E-09 8527 20211116_3444_TMUAki_TMT10x_S_F5 152.47 139.91 4704500 7339700 30659 8722800 9415600 8843100 5608800 5843300 6014200 4911600 6524900 4380300 6853800 450660 8802800 8932100 8934000 5900800 6064600 6118800 4835300 6278500 13 13 5 13 13 13 13 13 13 13 13 3651000 5669600 12535 6627000 8508900 8010700 4757600 4376400 4519600 3735100 4962600 3399300 5293900 352040 6713700 8063300 7993800 5014600 4613800 4624000 3674400 4773500 9 9 3 9 9 9 9 9 9 9 9 1053500 1670100 18123 2095900 906670 832400 851140 1466900 1494600 1176400 1562300 981060 1560000 98627 2089200 868830 940190 886170 1450700 1494800 1160900 1505000 4 4 2 4 4 4 4 4 4 4 4 571470000 484840000 86631000 12519 1669 11628 66545;66546;66547;66548;66549;66550;66551;66552 80457;80458;80459;80460;80461;80462;80463;80464;80465;80466;80467;80468;80469;80470 80467 14 LQPHPQLSPEIRR Unmodified 1569.874 0.87395863 1669 Q13895 BYSL Bystin yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 32.8 32.813 4 3.498E-06 9022 20211116_3439_TMUAki_TMT10x_S_F1 106.32 71.937 596390 910150 13636 1031200 972990 906290 704590 641800 756310 689480 892060 555350 849720 60833 1041600 926600 925030 730330 667320 771970 671410 856340 2 2 1 2 2 2 2 2 2 2 2 303500 437210 0 486630 667900 640390 369620 344770 421490 377260 445550 282530 408150 23671 495250 632490 636260 392130 366430 427370 367110 429060 1 1 0 1 1 1 1 1 1 1 1 292890 472940 13636 544620 305090 265900 334970 297040 334830 312220 446510 272810 441570 37162 546370 294110 288770 338200 300890 344600 304310 427280 1 1 1 1 1 1 1 1 1 1 1 69890000 34597000 35294000 12520 1669 11629 66553;66554 80471;80472 80472 2 LQPIALSCVLNIGACK Unmodified 1755.9375 0.93754644 1549 Q08752 PPID Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 78.862 78.864 3 2.5416E-07 26637 20211116_3442_TMUAki_TMT10x_S_F4 102.38 80.505 13244000 22118000 236720 20154000 15539000 20140000 16720000 13043000 12205000 14111000 16813000 12334000 20631000 1348800 20698000 14944000 20358000 16758000 13652000 12778000 13738000 16076000 4 4 3 4 4 4 4 4 4 4 4 6512300 10276000 5956.8 9683800 6801600 12659000 8093000 6790900 6568400 6979900 8083100 6063600 9586000 547520 9965400 6554300 12580000 8094400 7206300 6802700 6809200 7750600 2 2 1 2 2 2 2 2 2 2 2 6732100 11842000 230760 10470000 8737700 7480900 8627000 6252500 5636900 7131500 8729600 6270000 11045000 801290 10733000 8389300 7777800 8664000 6445400 5975200 6928800 8325400 2 2 2 2 2 2 2 2 2 2 2 4171700000 2213600000 1958100000 12521 1549 11630 66555;66556;66557;66558 80473;80474;80475;80476 80475 4 LQPLSPVPSDIEISR Unmodified 1649.8988 0.89883598 2018 Q6UB35 MTHFD1L Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes yes 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 65.33 65.331 2 0.065422 19859 20211116_3444_TMUAki_TMT10x_S_F5 42.464 29.848 5189300 8259700 0 7697000 6419500 5802300 5675400 6138500 5550700 6408000 6511800 4830400 7705000 285580 7863600 6126000 6035400 5791900 6232300 5686400 6247300 6252000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5189300 8259700 0 7697000 6419500 5802300 5675400 6138500 5550700 6408000 6511800 4830400 7705000 285580 7863600 6126000 6035400 5791900 6232300 5686400 6247300 6252000 1 1 0 1 1 1 1 1 1 1 1 580420000 0 580420000 12522 2018 11631 66559;66560 80477 80477 1 LQPPPPLPFGLGGFPPPPGVSPAEAAGVGEGLGLGLPSPR Unmodified 3796.0352 0.035216885 2359 Q92733 PRCC Proline-rich protein PRCC yes yes 0 0 0 0 By MS/MS By MS/MS 3.18 0.716 2 5 4 4 7 82.223 82.203 3;4;5 3.398E-44 27567 20211116_3431_TMUAki_TMT10x_P_F4 176.51 170.91 11757000 18252000 68935 20380000 12599000 11791000 15185000 7106700 7082700 8221000 12858000 10947000 17039000 769000 20512000 12145000 12436000 15017000 7495400 7764900 7983200 12224000 18 18 6 18 18 18 18 18 18 18 18 5104600 7214500 35144 8476300 5294000 6382400 6558000 3001100 2791000 3208200 5331900 4752900 6736600 331060 8526800 5108700 6555200 6469400 3228200 3094400 3124800 5064800 6 6 2 6 6 6 6 6 6 6 6 6652300 11038000 33791 11904000 7305100 5408400 8626700 4105600 4291700 5012800 7525600 6193800 10303000 437940 11985000 7036400 5881100 8547200 4267200 4670500 4858400 7159600 12 12 4 12 12 12 12 12 12 12 12 7121500000 3286100000 3835400000 12523 2359 11632 66561;66562;66563;66564;66565;66566;66567;66568;66569;66570;66571 80478;80479;80480;80481;80482;80483;80484;80485;80486;80487;80488;80489;80490;80491;80492;80493;80494;80495 80483 18 LQPSSSPENSLDPFPPR Unmodified 1866.9112 0.91119158 2315 Q8WWM7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7-3 ATXN2L Ataxin-2-like protein yes no 0 0 0 0 By MS/MS 5 0 1 1 60.055 60.16 3 1.2801E-06 17683 20211116_3444_TMUAki_TMT10x_S_F5 92.633 85.431 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12524 2315 11633 66572 80496 80496 1 LQQELDDLLVDLDHQR Unmodified 1948.9854 0.98541915 934 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 79.781 79.763 3 3.0276E-16 26185 20211116_3428_TMUAki_TMT10x_P_F1 159.34 139.25 4135000 8687900 75467 7611700 5544800 8352400 5783600 5067300 4728600 4940500 5625100 3850500 8102700 256460 7852300 5326200 8389400 5821400 5314100 4888500 4830400 5398600 3 3 1 3 3 3 3 3 3 3 3 2997700 5662200 0 4958100 3574800 6260900 3898700 3378100 3109900 3381600 3510500 2791100 5280800 80182 5127300 3434800 6233100 3913300 3580200 3212500 3302500 3374000 2 2 0 2 2 2 2 2 2 2 2 1137200 3025700 75467 2653600 1970000 2091500 1884900 1689200 1618700 1558900 2114600 1059400 2821900 176280 2725000 1891300 2156300 1908100 1733900 1676000 1527900 2024500 1 1 1 1 1 1 1 1 1 1 1 7348300000 2216100000 5132300000 12525 934 11634 66573;66574 80497;80498;80499 80497 3 LQQELDDLTVDLDHQR Unmodified 1936.949 0.94903365 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 72.601 72.434 3 6.8485E-47 25119 20211116_3439_TMUAki_TMT10x_S_F1 240.92 218.7 32904000 59348000 195900 45175000 41507000 60130000 46116000 58000000 54995000 57595000 46799000 30634000 55325000 2458400 47311000 39889000 60286000 46811000 59066000 55268000 56267000 45399000 8 8 4 8 8 8 8 8 8 8 8 12556000 23424000 95038 16828000 15108000 32779000 19928000 26364000 22856000 23613000 18165000 11690000 21833000 984130 17872000 14602000 32265000 20052000 27047000 22957000 23175000 17669000 3 3 2 3 3 3 3 3 3 3 3 20348000 35924000 100860 28347000 26398000 27351000 26188000 31636000 32139000 33982000 28633000 18944000 33493000 1474300 29439000 25287000 28021000 26759000 32019000 32311000 33092000 27730000 5 5 2 5 5 5 5 5 5 5 5 9909200000 6375300000 3533900000 12526 935 11635 66575;66576;66577;66578 80500;80501;80502;80503;80504;80505;80506;80507 80503 8 LQQELEFLEVQEEYIKDEQK Unmodified 2537.2537 0.25371467 1032 P43686 PSMC4 26S protease regulatory subunit 6B yes yes 0 0 0 1 By MS/MS 1 0 1 1 78.891 78.847 4 2.9397E-13 27794 20211116_3439_TMUAki_TMT10x_S_F1 137.43 117.89 5996100 9650800 54424 9206800 7527800 7505400 7716800 6868800 6038500 6258300 7284100 5583300 9003500 567720 9398300 7226000 7736700 7765700 6997500 6260800 6137300 6988200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5996100 9650800 54424 9206800 7527800 7505400 7716800 6868800 6038500 6258300 7284100 5583300 9003500 567720 9398300 7226000 7736700 7765700 6997500 6260800 6137300 6988200 2 2 1 2 2 2 2 2 2 2 2 675570000 0 675570000 12527 1032 11636 66579 80508;80509 80509 2 LQQGYNAMGFSQGGQFLR Oxidation (M) 2016.9476 0.94759386 1144 P50897 PPT1 Palmitoyl-protein thioesterase 1 yes yes 0 0 1 0 By MS/MS By MS/MS 1.6 0.49 2 3 3 2 57.916 57.722 2;3 3.627E-30 18748 20211116_3429_TMUAki_TMT10x_P_F2 175.54 161.28 13087000 22538000 340610 22109000 15662000 20033000 14889000 17865000 17473000 17171000 19080000 12188000 21029000 1436900 22554000 15019000 20487000 15223000 18252000 17720000 16799000 18356000 6 6 5 6 6 6 6 6 6 6 6 4312600 7201300 217110 6864200 6058800 10439000 5907200 6116200 5712100 6025200 6061100 4017100 6718300 584340 7079800 5818800 10317000 5993800 6434000 5832000 5888300 5836100 2 2 2 2 2 2 2 2 2 2 2 8774300 15337000 123500 15244000 9603500 9593400 8981400 11749000 11761000 11146000 13019000 8170600 14311000 852550 15474000 9200000 10170000 9228800 11818000 11888000 10911000 12520000 4 4 3 4 4 4 4 4 4 4 4 2794900000 1252000000 1542900000 12528 1144 11637 66580;66581;66582;66583;66584 80510;80511;80512;80513;80514;80515;80516 80512 1509 7 LQQGYNAMGFSQGGQFLR Unmodified 2000.9527 0.95267924 1144 P50897 PPT1 Palmitoyl-protein thioesterase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 66.323 65.861 3 1.2187E-40 23627 20211116_3441_TMUAki_TMT10x_S_F3 202.63 191.78 1702600 2966500 0 2901200 2475900 1993800 2075900 2134600 2001000 2016400 2389800 1585000 2767800 109550 2950800 2361200 2090300 2124300 2159600 2052700 1974200 2293300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1702600 2966500 0 2901200 2475900 1993800 2075900 2134600 2001000 2016400 2389800 1585000 2767800 109550 2950800 2361200 2090300 2124300 2159600 2052700 1974200 2293300 1 1 0 1 1 1 1 1 1 1 1 655650000 0 655650000 12529 1144 11637 66585;66586;66587 80517;80518;80519 80519 3 LQQLGEAHQAETEVLR Unmodified 1820.9381 0.93807503 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 46.714 46.712 3 4.5828E-15 14652 20211116_3430_TMUAki_TMT10x_P_F3 131.45 110.78 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12530 1741 11638 66588 80520 80520 1 LQQLGEAHQAETEVLRR Unmodified 1977.0392 0.039186058 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 4.64 0.881 1 4 4 2 6 5 42.07 42.125 3;4 3.4626E-53 11495 20211116_3433_TMUAki_TMT10x_P_F5 268.47 229.6 17254000 28726000 533930 32954000 34044000 31070000 21296000 23648000 23180000 20275000 25187000 16068000 26820000 1981200 33292000 32350000 31601000 22327000 24318000 23571000 19941000 24235000 12 12 7 12 12 12 12 12 12 12 12 11202000 18840000 438990 21760000 27610000 26552000 16544000 15562000 15102000 13187000 16563000 10434000 17590000 1526900 22064000 26219000 26507000 17316000 16306000 15478000 12977000 15933000 7 7 6 7 7 7 7 7 7 7 7 6051400 9886400 94941 11194000 6434500 4517500 4752100 8086200 8078500 7088600 8623500 5634900 9230000 454300 11228000 6130700 5094100 5011200 8011500 8092300 6964200 8301900 5 5 1 5 5 5 5 5 5 5 5 5423500000 3857300000 1566300000 12531 1741 11639 66589;66590;66591;66592;66593;66594;66595;66596;66597;66598;66599 80521;80522;80523;80524;80525;80526;80527;80528;80529;80530;80531;80532;80533;80534 80524 14 LQQLGLHQPR Unmodified 1188.6727 0.67273963 2208 Q8N8A6 DDX51 ATP-dependent RNA helicase DDX51 yes yes 0 0 0 0 By MS/MS 1 0 1 1 37.264 37.264 3 0.015042 8905 20211116_3428_TMUAki_TMT10x_P_F1 57.532 45.684 583720 898360 16856 978720 1067400 1096000 708590 693630 678930 539170 791800 543620 838570 70878 994540 1015500 1100300 736590 720920 696000 532950 760320 1 1 1 1 1 1 1 1 1 1 1 583720 898360 16856 978720 1067400 1096000 708590 693630 678930 539170 791800 543620 838570 70878 994540 1015500 1100300 736590 720920 696000 532950 760320 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31573000 31573000 0 12532 2208 11640 66600 80535 80535 1 LQQLPADFGR Unmodified 1143.6037 0.60365701 2409 Q96AG4 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 53.634 53.768 2 6.4933E-11 14996 20211116_3434_TMUAki_TMT10x_P_F6 206.43 155.8 32800000 50135000 414370 71605000 52194000 43652000 39168000 22667000 22654000 22973000 36618000 30543000 46862000 3377100 71115000 49744000 45722000 39899000 24114000 24264000 22424000 34891000 4 4 4 4 4 4 4 4 4 4 4 21774000 33623000 286620 47332000 43868000 38466000 31212000 16394000 15364000 15977000 24583000 20276000 31425000 2381700 47186000 41762000 39237000 31831000 17769000 16651000 15622000 23429000 3 3 3 3 3 3 3 3 3 3 3 11026000 16512000 127750 24273000 8326900 5186100 7955300 6272900 7289200 6995200 12034000 10267000 15437000 995380 23929000 7982600 6484900 8068200 6344600 7613000 6802200 11462000 1 1 1 1 1 1 1 1 1 1 1 1705500000 1156700000 548780000 12533 2409 11641 66601;66602;66603;66604 80536;80537;80538;80539;80540 80538 5 LQQQAALSPTTAPAVSSVSK Unmodified 1983.0637 0.063669474 2325 Q8WXI9 GATAD2B Transcriptional repressor p66-beta yes yes 0 0 0 0 By MS/MS 8 0 1 1 52.834 52.742 3 1.3835E-09 14761 20211116_3447_TMUAki_TMT10x_S_F8 117.55 95.347 1080300 1894200 13757 1845000 1134600 1032600 963600 2270300 1984100 1676600 1666100 1006000 1767300 103150 1873500 1084400 1129800 1018000 2228000 1962500 1661900 1617100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1080300 1894200 13757 1845000 1134600 1032600 963600 2270300 1984100 1676600 1666100 1006000 1767300 103150 1873500 1084400 1129800 1018000 2228000 1962500 1661900 1617100 1 1 1 1 1 1 1 1 1 1 1 470490000 0 470490000 12534 2325 11642 66605 80541 80541 1 LQQSFPGIEVTVK Unmodified 1444.7926 0.79257999 358 O75792 RNASEH2A Ribonuclease H2 subunit A yes yes 0 0 0 0 By MS/MS 8 0 1 1 67.495 67.373 3 4.1113E-09 20688 20211116_3447_TMUAki_TMT10x_S_F8 122.78 102.4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12535 358 11643 66606 80542 80542 1 LQQTEAELR Unmodified 1086.5669 0.56693715 820 P26640 VARS Valine--tRNA ligase yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 37.977 37.934 2 0.00034878 10759 20211116_3429_TMUAki_TMT10x_P_F2 91.867 59.512 1456100 2357700 5299.7 2237900 1836300 1766100 1430600 1317000 1484800 1269300 1859500 1355800 2199600 125850 2284400 1750500 1818200 1474000 1360300 1521500 1241600 1782200 3 3 2 3 3 3 3 3 3 3 3 789410 1240700 0 1107800 1153300 1241300 759410 540030 668990 571600 904150 734970 1157200 65406 1141600 1095600 1240500 788100 585400 692880 556960 864920 1 1 0 1 1 1 1 1 1 1 1 666720 1117000 5299.7 1130000 682980 524860 671220 776980 815840 697700 955360 620830 1042400 60443 1142800 654900 577680 685940 774890 828600 684680 917280 2 2 2 2 2 2 2 2 2 2 2 68171000 23251000 44920000 12536 820 11644 66607;66608;66609;66610 80543;80544;80545 80543 3 LQQTQAQVDEVVDIMR Oxidation (M) 1887.936 0.93602612 1392 P63027 VAMP2 Vesicle-associated membrane protein 2 yes yes 0 0 1 0 By MS/MS By MS/MS 3 0 2 1 1 59.028 58.7 3 0.00041713 19660 20211116_3430_TMUAki_TMT10x_P_F3 70.863 57.727 8011200 13013000 48607 12086000 10152000 11395000 8864600 11301000 10549000 9915200 11258000 7459500 12139000 731220 12384000 9704500 11649000 9111200 11453000 10683000 9740700 10838000 3 3 2 3 3 3 3 3 3 3 3 2875800 4065000 9055.3 4055700 3493800 6031800 3423800 3885400 3596800 3503200 3881800 2677700 3793100 255520 4167700 3348800 5974600 3482000 4047300 3661700 3437200 3735800 1 1 1 1 1 1 1 1 1 1 1 5135400 8947800 39552 8029900 6658400 5363300 5440800 7415200 6952200 6412000 7375800 4781800 8345800 475700 8216800 6355700 5674400 5629300 7405700 7021500 6303600 7102000 2 2 1 2 2 2 2 2 2 2 2 468060000 220560000 247490000 12537 1392 11645 66611;66612 80546;80547;80548 80546 1871 3 LQQTQAQVDEVVDIMR Unmodified 1871.9411 0.9411115 1392 P63027 VAMP2 Vesicle-associated membrane protein 2 yes yes 0 0 0 0 By MS/MS 3 0 1 1 74.223 74.058 3 1.544E-06 25848 20211116_3430_TMUAki_TMT10x_P_F3 95.767 79.628 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12538 1392 11645 66613 80549 80549 1 LQQYEEIIQSTEEFENALK Unmodified 2311.122 0.12197221 206 O43264;O43264-2 ZW10 Centromere/kinetochore protein zw10 homolog yes no 0 0 0 0 By MS/MS 2 0 1 1 81.28 81.273 3 0.053136 28247 20211116_3429_TMUAki_TMT10x_P_F2 38.721 24.706 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12539 206 11646 66614 80550 80550 1 LQSEPESIRK Unmodified 1185.6354 0.63535107 580 P09496-2;P09496;P09496-4;P09496-3 CLTA Clathrin light chain A yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 30.49 30.507 3 0.00044761 7904 20211116_3431_TMUAki_TMT10x_P_F4 99.539 56.736 3123700 5005400 53037 4653500 6204400 5651400 4043300 2777400 3260000 2782600 3930400 2908800 4669300 351550 4787100 5898000 5631100 4190100 2969100 3374600 2717400 3770800 3 3 3 3 3 3 3 3 3 3 3 2965600 4711100 49927 4400400 6032500 5515000 3846500 2607400 3078400 2640200 3725500 2761600 4394800 335350 4527800 5732300 5484200 3992200 2798700 3188300 2577200 3573800 2 2 2 2 2 2 2 2 2 2 2 158060 294340 3109.7 253040 171930 136430 196820 170060 181680 142400 204890 147190 274490 16196 259320 165670 146940 197870 170380 186310 140210 196930 1 1 1 1 1 1 1 1 1 1 1 231160000 173700000 57462000 12540 580 11647 66615;66616;66617 80551;80552;80553 80551 3 LQSIGTENTEENRR Unmodified 1645.802 0.80197548 482 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 1 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 31.591 31.574 3 9.4608E-36 9612 20211116_3441_TMUAki_TMT10x_S_F3 224.34 182.23 802170 1327500 12732 1212100 1737700 1672500 1091200 880740 1019900 794280 1255500 746990 1238200 91474 1251600 1650700 1657600 1138400 932840 1049000 779300 1203900 2 2 2 2 2 2 2 2 2 2 2 802170 1327500 12732 1212100 1737700 1672500 1091200 880740 1019900 794280 1255500 746990 1238200 91474 1251600 1650700 1657600 1138400 932840 1049000 779300 1203900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 170890000 170890000 0 12541 482 11648 66618;66619;66620 80554;80555;80556 80556 3 LQSRPAAPPAPGPGQLTLR Unmodified 1926.0799 0.079928661 2580 Q99536 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 44.031 43.984 3 1.4545E-50 12311 20211116_3442_TMUAki_TMT10x_S_F4 225.83 193.55 12284000 19948000 26555 23122000 21190000 20167000 13577000 18659000 19092000 15594000 18239000 11437000 18626000 1061700 23320000 20122000 20693000 14340000 18956000 19152000 15356000 17621000 9 9 3 9 9 9 9 9 9 9 9 5928900 9024700 24087 10657000 14420000 14712000 8207800 8817500 9473400 7227700 8437700 5520000 8427200 558990 10818000 13667000 14605000 8689500 9214900 9545400 7124400 8171600 5 5 2 5 5 5 5 5 5 5 5 6354700 10924000 2468.1 12465000 6770800 5454700 5369100 9841900 9619000 8366200 9801500 5916600 10199000 502700 12503000 6454900 6087900 5651000 9741000 9606100 8231600 9449500 4 4 1 4 4 4 4 4 4 4 4 4459300000 2530900000 1928300000 12542 2580 11649 66621;66622;66623;66624;66625;66626 80557;80558;80559;80560;80561;80562;80563;80564;80565 80565 9 LQSSQEPEAPPPRDVALLQGR Unmodified 2287.1921 0.19205789 3191 Q9UNF1;Q9UNF1-2 MAGED2 Melanoma-associated antigen D2 yes no 0 0 0 1 By MS/MS 5 0 1 1 47.206 47.364 3 0.10998 13584 20211116_3433_TMUAki_TMT10x_P_F5 31.976 20.362 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12543 3191 11650 66627 80566 80566 1 LQSTFVFEEIGRR Unmodified 1580.8311 0.83109076 1161 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 60.393 60.698 3 2.3616E-30 17939 20211116_3447_TMUAki_TMT10x_S_F8 253.69 203.46 18911000 31410000 182010 29079000 21386000 29583000 23404000 24133000 23071000 23208000 24326000 17609000 29300000 1684100 29838000 20562000 29984000 23624000 24784000 23530000 22705000 23428000 5 5 4 5 5 5 5 5 5 5 5 11515000 19345000 171960 17759000 12965000 21820000 14947000 15789000 14717000 15250000 15133000 10723000 18045000 1135200 18290000 12492000 21843000 15050000 16342000 14997000 14917000 14585000 3 3 3 3 3 3 3 3 3 3 3 7396300 12065000 10051 11320000 8421100 7762700 8457600 8343800 8353500 7958100 9193600 6886100 11255000 548880 11548000 8070400 8140700 8573700 8442500 8532600 7788200 8842800 2 2 1 2 2 2 2 2 2 2 2 2376100000 1346600000 1029500000 12544 1161 11651 66628;66629;66630 80567;80568;80569;80570;80571 80570 5 LQTPNTFPK Unmodified 1044.5604 0.56039521 1740 Q14978;Q14978-2;Q14978-3 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 0 0 0 0 By MS/MS 8 0 1 1 48.127 48.231 2 2.9231E-05 13406 20211116_3436_TMUAki_TMT10x_P_F8 133.13 65.231 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12545 1740 11652 66631 80572 80572 1 LQTQVFK Unmodified 862.49125 0.49125301 1054 P46781 RPS9 40S ribosomal protein S9 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 47.431 47.437 2 0.0072215 13122 20211116_3436_TMUAki_TMT10x_P_F8 101.6 47.076 6363800 10940000 14578 11646000 11247000 11404000 7681100 9515000 9373600 8635100 9629500 5925400 10211000 600910 11828000 10695000 11590000 8030100 9743200 9471100 8469800 9281400 2 2 1 2 2 2 2 2 2 2 2 3427000 5842700 14578 6091600 8136800 8346300 4589500 4777500 4854000 4549000 5018900 3191000 5452800 363670 6230600 7713600 8283400 4849000 5030700 4932400 4452200 4836400 1 1 1 1 1 1 1 1 1 1 1 2936800 5097000 0 5554500 3110400 3058100 3091600 4737600 4519600 4086100 4610700 2734400 4757700 237240 5596900 2981400 3307100 3181200 4712600 4538700 4017600 4444900 1 1 0 1 1 1 1 1 1 1 1 448060000 293780000 154280000 12546 1054 11653 66632;66633 80573;80574 80573 2 LQTSLTCNSMVLFDHVGCLK Oxidation (M) 2338.112 0.11195835 625 P11388;P11388-2;P11388-3;P11388-4 TOP2A DNA topoisomerase 2-alpha yes no 0 0 1 0 By MS/MS 1 0 1 1 69.774 69.774 3 9.9016E-06 22093 20211116_3428_TMUAki_TMT10x_P_F1 84.581 68.989 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12547 625 11654 66634 80575 80575 643 1 LQTSSVLVSGLR Unmodified 1258.7245 0.72450043 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By MS/MS By MS/MS 3 2.45 3 4 2 2 6 5 55.847 55.694 2;3 2.3263E-36 17880 20211116_3429_TMUAki_TMT10x_P_F2 258.48 203.04 33679000 57482000 213000 55727000 47126000 60738000 38814000 56272000 53653000 49207000 50350000 31358000 53631000 2870800 57050000 44971000 61467000 40264000 57228000 53816000 48349000 48673000 9 9 4 9 9 9 9 9 9 9 9 17689000 30186000 89982 26601000 32165000 46152000 26575000 29798000 28592000 26265000 26548000 16469000 28153000 1488200 27683000 30689000 45443000 27311000 31016000 28927000 25798000 25673000 5 5 2 5 5 5 5 5 5 5 5 15990000 27296000 123020 29126000 14961000 14586000 12239000 26474000 25061000 22942000 23802000 14889000 25477000 1382600 29366000 14282000 16023000 12954000 26212000 24890000 22551000 23000000 4 4 2 4 4 4 4 4 4 4 4 3135500000 1693200000 1442300000 12548 769 11655 66635;66636;66637;66638;66639;66640;66641;66642;66643;66644;66645 80576;80577;80578;80579;80580;80581;80582;80583;80584;80585;80586;80587 80579 12 LQVAGEITTGPR Unmodified 1240.6776 0.67755023 3141 Q9UJS0;Q9UJS0-2;O75746;O75746-2 SLC25A13;SLC25A12 Calcium-binding mitochondrial carrier protein Aralar2;Calcium-binding mitochondrial carrier protein Aralar1 yes no 0 0 0 0 By MS/MS By MS/MS 4.89 0.737 3 4 2 4 5 46.018 46.175 2;3 2.8552E-20 11958 20211116_3444_TMUAki_TMT10x_S_F5 236.69 164.46 21370000 35182000 108060 36981000 31066000 32732000 22462000 30739000 26828000 25943000 30050000 19897000 32835000 1836700 37536000 29567000 33563000 23369000 31210000 27216000 25535000 28889000 9 9 4 9 9 9 9 9 9 9 9 12410000 19638000 47477 20951000 20150000 25756000 15139000 15576000 14275000 14185000 16326000 11554000 18330000 1058500 21352000 19190000 25714000 15591000 16309000 14633000 13911000 15686000 4 4 2 4 4 4 4 4 4 4 4 8960000 15543000 60579 16030000 10916000 6976200 7323600 15163000 12553000 11758000 13724000 8342700 14505000 778220 16184000 10377000 7849300 7778300 14902000 12583000 11623000 13203000 5 5 2 5 5 5 5 5 5 5 5 1734400000 1077700000 656690000 12549 3141 11656 66646;66647;66648;66649;66650;66651;66652;66653;66654 80588;80589;80590;80591;80592;80593;80594;80595;80596;80597;80598;80599 80596 12 LQVEEVHQLSR Unmodified 1336.7099 0.709913 2917 Q9NR28;Q9NR28-2;Q9NR28-3 DIABLO Diablo homolog, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 3.5 1.19 1 2 1 6 2 4 8 34.437 34.437 3 4.5612E-16 12059 20211116_3441_TMUAki_TMT10x_S_F3 201.66 165.37 6259200 10033000 55727 10895000 10347000 9572300 7270600 6927800 6770700 6004900 8309600 5828300 9365500 617920 11034000 9846400 9773800 7520200 7149500 6964500 5902700 7968300 9 9 5 9 9 9 9 9 9 9 9 3836400 5871900 9416.9 6476400 8252400 7606300 5323600 3774200 3315200 3339700 4858000 3572100 5481300 385020 6581200 7839500 7593000 5490900 4017700 3515200 3279600 4638500 3 3 1 3 3 3 3 3 3 3 3 2422800 4161600 46310 4418900 2094400 1966000 1946900 3153600 3455600 2665200 3451600 2256200 3884200 232900 4453200 2006900 2180800 2029300 3131800 3449300 2623100 3329800 6 6 4 6 6 6 6 6 6 6 6 822080000 639120000 182970000 12550 2917 11657 66655;66656;66657;66658;66659;66660;66661;66662;66663;66664;66665;66666 80600;80601;80602;80603;80604;80605;80606;80607;80608;80609;80610 80604 11 LQVELDNVTGLLSQSDSK Unmodified 1945.0004 0.0004005156 934 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 By MS/MS By MS/MS 4.43 0.904 1 3 2 1 5 2 78.665 78.652 2;3 1.1121E-23 26154 20211116_3431_TMUAki_TMT10x_P_F4 167.14 162.79 21034000 34060000 177830 33016000 21908000 32736000 25149000 20318000 20252000 21258000 26124000 19584000 31778000 1705300 33751000 21084000 33088000 25189000 21313000 21026000 20723000 25019000 7 7 3 7 7 7 7 7 7 7 7 14835000 23404000 90950 22882000 13413000 25748000 16766000 14019000 14097000 14928000 17526000 13813000 21836000 1231100 23423000 12947000 25790000 16749000 14872000 14579000 14542000 16800000 5 5 2 5 5 5 5 5 5 5 5 6199100 10656000 86879 10134000 8494700 6988400 8383500 6299600 6155600 6330200 8598100 5771400 9941500 474210 10328000 8137600 7297800 8440600 6440700 6446400 6181100 8218700 2 2 1 2 2 2 2 2 2 2 2 5434200000 3416200000 2017900000 12551 934 11658 66667;66668;66669;66670;66671;66672;66673 80611;80612;80613;80614;80615;80616;80617 80612 7 LQVIVCSATLHSFDVK Unmodified 1815.9553 0.955305 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 By MS/MS By MS/MS 2.86 2.23 2 2 2 1 4 3 71.622 71.468 3 1.1826E-47 25942 20211116_3441_TMUAki_TMT10x_S_F3 254.72 209.92 42360000 70229000 301650 66116000 43237000 66278000 42804000 35122000 30404000 35240000 45404000 39443000 65515000 3759000 67742000 41462000 66810000 43057000 37286000 32006000 34412000 43335000 10 10 7 10 10 10 10 10 10 10 10 24667000 38664000 75073 36934000 23949000 47143000 24550000 19811000 17235000 19548000 25310000 22968000 36071000 2063000 37954000 22980000 46782000 24644000 21514000 18140000 19102000 24166000 5 5 3 5 5 5 5 5 5 5 5 17693000 31565000 226580 29182000 19288000 19135000 18254000 15311000 13170000 15692000 20093000 16475000 29445000 1696100 29788000 18482000 20028000 18412000 15771000 13866000 15310000 19169000 5 5 4 5 5 5 5 5 5 5 5 12413000000 7364900000 5047600000 12552 2334 11659 66674;66675;66676;66677;66678;66679;66680 80618;80619;80620;80621;80622;80623;80624;80625;80626;80627 80627 10 LQVIVCSATLHSFDVKK Unmodified 1944.0503 0.050268017 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 65.123 64.92 4 3.3404E-29 23295 20211116_3441_TMUAki_TMT10x_S_F3 180.14 148.62 39707000 63808000 421170 61689000 46850000 79031000 43186000 44429000 37391000 43974000 47084000 36974000 59532000 3747400 63342000 44853000 78665000 43818000 46905000 38636000 42966000 45120000 6 6 5 6 6 6 6 6 6 6 6 28623000 43354000 312660 42752000 33977000 66523000 33403000 31830000 26785000 30653000 32266000 26653000 40451000 2702400 44012000 32581000 65524000 33707000 34078000 27733000 29986000 30956000 4 4 3 4 4 4 4 4 4 4 4 11083000 20454000 108510 18937000 12873000 12508000 9783400 12599000 10606000 13321000 14819000 10320000 19080000 1045100 19330000 12272000 13141000 10111000 12827000 10903000 12980000 14165000 2 2 2 2 2 2 2 2 2 2 2 4856400000 2468900000 2387500000 12553 2334 11660 66681;66682;66683;66684 80628;80629;80630;80631;80632;80633 80632 6 LQVTNVLSQPLTQATVK Unmodified 1839.0466 0.046562847 495 P04844;P04844-2 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.707 1 2 5 4 4 71.583 71.341 2;3 1.1759E-50 25802 20211116_3441_TMUAki_TMT10x_S_F3 229.17 197.53 19869000 34835000 324580 34896000 24466000 29622000 23172000 22033000 20658000 23178000 26048000 18503000 32505000 2014200 35517000 23447000 30332000 23494000 22819000 21318000 22589000 24961000 5 5 5 5 5 5 5 5 5 5 5 11058000 19906000 174680 18631000 14698000 21216000 13972000 12404000 12031000 13199000 14260000 10298000 18570000 1130600 19135000 14086000 21256000 14150000 13080000 12403000 12858000 13687000 3 3 3 3 3 3 3 3 3 3 3 8810800 14929000 149900 16266000 9768300 8406100 9200300 9629800 8627700 9979100 11788000 8204900 13935000 883590 16382000 9361100 9075900 9344300 9739600 8914400 9731800 11274000 2 2 2 2 2 2 2 2 2 2 2 9026300000 4612700000 4413600000 12554 495 11661 66685;66686;66687;66688;66689;66690;66691;66692 80634;80635;80636;80637;80638;80639;80640;80641 80641 8 LQVVDQPLPVR Unmodified 1262.7347 0.73467118 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 5.64 0.881 1 4 4 2 6 5 54.518 54.716 2;3 7.8317E-16 15510 20211116_3444_TMUAki_TMT10x_S_F5 207.83 164.81 47704000 78845000 490930 83698000 65397000 80101000 46131000 62251000 63277000 58445000 62370000 44419000 73589000 4377100 84989000 62233000 81422000 48331000 64080000 63591000 57237000 60194000 10 10 6 10 10 10 10 10 10 10 10 28730000 45165000 312720 48742000 48254000 63085000 32975000 35949000 35640000 33726000 35680000 26751000 42157000 2763600 49686000 45891000 62772000 34329000 37854000 36143000 33030000 34418000 6 6 4 6 6 6 6 6 6 6 6 18975000 33680000 178210 34956000 17144000 17016000 13156000 26302000 27637000 24719000 26690000 17668000 31432000 1613500 35303000 16342000 18650000 14002000 26226000 27448000 24207000 25776000 4 4 2 4 4 4 4 4 4 4 4 6482400000 3168600000 3313800000 12555 1092 11662 66693;66694;66695;66696;66697;66698;66699;66700;66701;66702;66703 80642;80643;80644;80645;80646;80647;80648;80649;80650;80651;80652;80653;80654;80655;80656 80652 15 LQVVLEHMPVGPDAILR Oxidation (M) 1902.0397 0.03970333 1047 P46379;P46379-2;P46379-3;P46379-4;P46379-5 BAG6 Large proline-rich protein BAG6 yes no 0 0 1 0 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 64.885 65.494 3 0.010342 21702 20211116_3435_TMUAki_TMT10x_P_F7 48.547 36.401 2257100 3576000 45565 3213500 2496800 5104300 2908100 2626900 2331000 2668800 2726100 2101900 3335500 232950 3332200 2407200 5027600 2910400 2797100 2410700 2604800 2617500 1 1 1 1 1 1 1 1 1 1 1 2257100 3576000 45565 3213500 2496800 5104300 2908100 2626900 2331000 2668800 2726100 2101900 3335500 232950 3332200 2407200 5027600 2910400 2797100 2410700 2604800 2617500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 390480000 390480000 0 12556 1047 11663 66704;66705 80657;80658 80657 1350 2 LQVVLNESNADTYAGRPLPSK Unmodified 2271.1859 0.18590988 20 A6NHR9;A6NHR9-2 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 0 1 By MS/MS 8 0 1 1 59.002 59.179 4 0.0069473 17792 20211116_3436_TMUAki_TMT10x_P_F8 53.342 37.576 6020500 9539400 45862 9137000 9177400 16248000 8314100 13614000 10981000 10939000 9734200 5605400 8899800 508460 9456000 8775800 16055000 8561000 13894000 11011000 10794000 9428900 2 2 1 2 2 2 2 2 2 2 2 6020500 9539400 45862 9137000 9177400 16248000 8314100 13614000 10981000 10939000 9734200 5605400 8899800 508460 9456000 8775800 16055000 8561000 13894000 11011000 10794000 9428900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 345200000 345200000 0 12557 20 11664 66706 80659;80660 80659 2 LQWFCDR Unmodified 1023.4596 0.45963531 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 By MS/MS 8 0 1 1 59.453 59.445 2 0.0037075 17444 20211116_3447_TMUAki_TMT10x_S_F8 117.1 87.524 4558500 8120700 16091 9087000 4509200 3559400 3870500 3587800 3574200 3688900 5555200 4244600 7581100 392240 9119300 4308600 3967600 3950200 3649400 3719400 3598600 5297600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4558500 8120700 16091 9087000 4509200 3559400 3870500 3587800 3574200 3688900 5555200 4244600 7581100 392240 9119300 4308600 3967600 3950200 3649400 3719400 3598600 5297600 1 1 1 1 1 1 1 1 1 1 1 161910000 0 161910000 12558 1018 11665 66707 80661 80661 1 LQYEGIFIK Unmodified 1109.6121 0.61209643 1810 Q15459;Q15459-2 SF3A1 Splicing factor 3A subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 69.033 69.12 2 8.7129E-05 23661 20211116_3446_TMUAki_TMT10x_S_F7 140.75 59.119 42880000 71163000 530660 80419000 45767000 43604000 45173000 39074000 37981000 39015000 54614000 39929000 66437000 3930800 80836000 43890000 46590000 45630000 39955000 39544000 38107000 52170000 5 5 4 5 5 5 5 5 5 5 5 6961100 10616000 29536 11654000 7154600 10873000 7166600 5684300 5817500 6273800 7662900 6481700 9909800 607360 11804000 6862300 11008000 7227000 6058900 6042800 6103000 7335000 1 1 1 1 1 1 1 1 1 1 1 35919000 60547000 501120 68765000 38612000 32731000 38007000 33390000 32164000 32741000 46951000 33447000 56527000 3323400 69033000 37028000 35582000 38403000 33896000 33501000 32004000 44835000 4 4 3 4 4 4 4 4 4 4 4 2148900000 539190000 1609700000 12559 1810 11666 66708;66709;66710 80662;80663;80664;80665;80666 80664 5 LQYTEHQQLEGWR Unmodified 1686.8114 0.81141795 1567 Q12800;Q12800-2;Q12800-3;Q12800-4;Q9NZI6 TFCP2;TFCP2L1 Alpha-globin transcription factor CP2;Transcription factor CP2-like protein 1 yes no 0 0 0 0 By MS/MS 5 0 1 1 44.231 44.374 3 0.009009 11254 20211116_3444_TMUAki_TMT10x_S_F5 62.011 48.811 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12560 1567 11667 66711 80667 80667 1 LRAEAGLGALPR Unmodified 1222.7146 0.71460444 2924 Q9NR77 PXMP2 Peroxisomal membrane protein 2 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 41.41 41.329 3 7.829E-09 10479 20211116_3428_TMUAki_TMT10x_P_F1 141.58 110.97 2547500 3778500 85215 4828400 4242900 3358800 2969700 2940000 2847700 2661400 3460900 2372600 3529700 314370 4829600 4041400 3503000 3075100 3002000 2924100 2610700 3319600 3 3 3 3 3 3 3 3 3 3 3 992500 1468900 39639 1990900 2746600 2028600 1505400 1225200 1109800 1036900 1367000 924410 1372600 143800 1994700 2604800 2046200 1579600 1280600 1155500 1020500 1310800 1 1 1 1 1 1 1 1 1 1 1 1555000 2309600 45576 2837500 1496300 1330200 1464300 1714800 1737900 1624500 2093800 1448200 2157000 170570 2834900 1436700 1456800 1495500 1721400 1768600 1590300 2008800 2 2 2 2 2 2 2 2 2 2 2 227430000 143800000 83623000 12561 2924 11668 66712;66713;66714;66715 80668;80669;80670;80671;80672 80668 5 LRAELDEVNK Unmodified 1185.6354 0.63535107 1505 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 1 By MS/MS By MS/MS 3.29 1.03 2 2 2 1 3 4 41.655 41.641 3 1.2449E-06 11076 20211116_3431_TMUAki_TMT10x_P_F4 151.07 99.338 8174600 11631000 32679 13759000 11030000 11293000 8573400 7469000 7866200 7499100 10024000 7611600 10861000 747140 13849000 10516000 11571000 8802900 7787800 8110000 7322700 9602700 5 5 4 5 5 5 5 5 5 5 5 5909900 8193700 7066.1 9808600 8798500 9524000 6243700 5292800 5663900 5395100 7283900 5502800 7651600 535980 9888000 8372500 9624900 6448900 5597900 5844900 5264900 6976300 3 3 2 3 3 3 3 3 3 3 3 2264700 3437500 25613 3950400 2231300 1769300 2329700 2176200 2202300 2104000 2739800 2108800 3209500 211160 3961200 2143500 1946100 2354100 2189900 2265100 2057800 2626400 2 2 2 2 2 2 2 2 2 2 2 979590000 549480000 430110000 12562 1505 11669 66716;66717;66718;66719;66720;66721;66722 80673;80674;80675;80676;80677 80675 5 LRAEPDHMVLGK Oxidation (M) 1380.7184 0.71836919 1002 P41252 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 0 0 1 1 By MS/MS 6 0 1 1 33.398 33.372 4 0.057136 6858 20211116_3434_TMUAki_TMT10x_P_F6 42.095 25.322 141450 227970 0 218340 225250 230530 158780 107340 107500 115580 172230 131690 212690 10381 223610 214150 231320 162950 115600 113900 112540 164140 1 1 0 1 1 1 1 1 1 1 1 141450 227970 0 218340 225250 230530 158780 107340 107500 115580 172230 131690 212690 10381 223610 214150 231320 162950 115600 113900 112540 164140 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7196200 7196200 0 12563 1002 11670 66723 80678 80678 1295 1 LRAESDFVKFDTPFLPK Unmodified 2009.0622 0.062212911 1724 Q14684;Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 0 2 By MS/MS 1 0 1 1 68.226 68.02 4 1.2184E-10 23446 20211116_3439_TMUAki_TMT10x_S_F1 127.22 99.248 2463100 4121500 23560 3950600 2119600 2427800 2275800 1970900 2493600 2493800 2685500 2293500 3845100 221350 4019600 2037700 2556900 2307000 2042600 2534000 2414100 2584700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2463100 4121500 23560 3950600 2119600 2427800 2275800 1970900 2493600 2493800 2685500 2293500 3845100 221350 4019600 2037700 2556900 2307000 2042600 2534000 2414100 2584700 1 1 1 1 1 1 1 1 1 1 1 288340000 0 288340000 12564 1724 11671 66724 80679 80679 1 LRAESEVPIVK Unmodified 1239.7187 0.71868677 1931 Q5SW79;Q5SW79-2;Q5SW79-3;Q96L14 CEP170;CEP170P1 Centrosomal protein of 170 kDa;Cep170-like protein yes no 0 0 0 1 By MS/MS 5 0 1 1 42.824 42.95 3 0.051005 10693 20211116_3444_TMUAki_TMT10x_S_F5 45.257 23.626 3044100 4713500 0 6106900 2634800 1922300 2454900 3863500 3778100 2742100 4440000 2834200 4403400 229320 6069000 2520700 2260000 2540500 3796600 3809100 2724300 4262600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3044100 4713500 0 6106900 2634800 1922300 2454900 3863500 3778100 2742100 4440000 2834200 4403400 229320 6069000 2520700 2260000 2540500 3796600 3809100 2724300 4262600 1 1 0 1 1 1 1 1 1 1 1 139520000 0 139520000 12565 1931 11672 66725 80680 80680 1 LRAPIICVLGHVDTGK Unmodified 1747.9767 0.97670914 295 O60841 EIF5B Eukaryotic translation initiation factor 5B yes yes 0 0 0 1 By MS/MS 3 0.816 1 1 1 3 58.03 57.795 4 2.0076E-07 20339 20211116_3441_TMUAki_TMT10x_S_F3 112.67 99.9 2855500 4956000 4534.6 4989500 2906100 2538000 2440700 3566600 3008400 3472900 3751100 2658800 4624600 241680 5051100 2775000 2759800 2517600 3571600 3062000 3395700 3595500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2855500 4956000 4534.6 4989500 2906100 2538000 2440700 3566600 3008400 3472900 3751100 2658800 4624600 241680 5051100 2775000 2759800 2517600 3571600 3062000 3395700 3595500 1 1 1 1 1 1 1 1 1 1 1 1647200000 0 1647200000 12566 295 11673 66726;66727;66728 80681 80681 1 LRAPPNATLEHFYLTSGK Unmodified 2014.0636 0.063609895 2468 Q96G23 CERS2 Ceramide synthase 2 yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 53.626 53.386 4 1.072E-06 16936 20211116_3429_TMUAki_TMT10x_P_F2 100.77 84.831 22992000 37785000 168560 39848000 27160000 31987000 23284000 26524000 26716000 27064000 30825000 21408000 35265000 2056400 40388000 25951000 32948000 23927000 27260000 27174000 26410000 29609000 6 6 3 6 6 6 6 6 6 6 6 6860400 11083000 0 11572000 11114000 15466000 8554200 7837800 8299900 8612600 8976200 6387400 10343000 593720 11829000 10590000 15344000 8802800 8377100 8478900 8379600 8638100 2 2 0 2 2 2 2 2 2 2 2 16131000 26702000 168560 28276000 16046000 16521000 14730000 18687000 18416000 18451000 21849000 15021000 24922000 1462700 28560000 15360000 17604000 15124000 18883000 18695000 18030000 20971000 4 4 3 4 4 4 4 4 4 4 4 2259000000 1299700000 959300000 12567 2468 11674 66729;66730;66731;66732 80682;80683;80684;80685;80686;80687 80682 6 LRAPPNATLEHFYLTSGKQPK Unmodified 2367.2699 0.26991428 2468 Q96G23 CERS2 Ceramide synthase 2 yes yes 0 0 0 2 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 49.467 49.565 5 2.3365E-10 14103 20211116_3431_TMUAki_TMT10x_P_F4 115.46 106.18 10477000 19716000 137230 17613000 17203000 17387000 10914000 15740000 13073000 12442000 14327000 9756100 18389000 1090700 18114000 16346000 17690000 11466000 15988000 13250000 12288000 13782000 2 2 2 2 2 2 2 2 2 2 2 5479800 8818300 58542 8550100 9083100 12919000 7701200 7080400 6077600 6247400 6606600 5102600 8227400 559340 8806800 8678100 12760000 7833700 7468600 6272800 6135900 6356800 1 1 1 1 1 1 1 1 1 1 1 4997200 10897000 78692 9063400 8120300 4468300 3212800 8659400 6995700 6194900 7720500 4653500 10162000 531380 9307000 7667500 4929600 3632600 8519000 6977100 6151800 7425300 1 1 1 1 1 1 1 1 1 1 1 2606100000 1789100000 817050000 12568 2468 11675 66733;66734;66735;66736 80688;80689 80688 2 LRAVDFAER Unmodified 1075.5774 0.57744226 1384 P62917 RPL8 60S ribosomal protein L8 yes yes 0 0 0 1 By MS/MS By MS/MS 5.14 0.833 2 2 3 3 4 38.086 38.15 3 3.221E-06 10115 20211116_3433_TMUAki_TMT10x_P_F5 160.77 110.07 5812000 8911500 39878 10328000 9754500 7582800 5813900 6997300 6851900 5515500 8528600 5411800 8320700 571910 10395000 9256300 7881000 6135500 7099500 6984700 5447700 8175400 8 8 7 8 8 8 8 8 8 8 8 2432500 3625800 23330 4174900 5872400 5377800 2869900 3388200 3241500 2685600 3754400 2265100 3385300 271590 4238300 5556700 5359700 3079600 3524300 3299700 2651900 3605900 3 3 3 3 3 3 3 3 3 3 3 3379500 5285700 16549 6152600 3882100 2204900 2943900 3609000 3610400 2829800 4774200 3146800 4935400 300320 6156400 3699600 2521300 3055900 3575200 3685000 2795800 4569500 5 5 4 5 5 5 5 5 5 5 5 525710000 343670000 182040000 12569 1384 11676 66737;66738;66739;66740;66741;66742;66743 80690;80691;80692;80693;80694;80695;80696;80697;80698;80699 80691 10 LRDFLLDIEDR Unmodified 1403.7409 0.74087877 2929 Q9NRL2;Q9NRL2-2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 0 0 0 1 By MS/MS 3 0 1 1 73.901 73.737 3 1.8334E-11 25717 20211116_3430_TMUAki_TMT10x_P_F3 127.79 94.568 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12570 2929 11677 66744 80700 80700 1 LRDFVLVK Unmodified 988.60695 0.60695147 142 O14929;O14929-2 HAT1 Histone acetyltransferase type B catalytic subunit yes no 0 0 0 1 By MS/MS By matching 2 0 2 1 1 55.923 55.691 3 0.0013975 17899 20211116_3429_TMUAki_TMT10x_P_F2 107.15 63.019 2081000 2912500 0 3334600 4302100 4458100 2369600 2300400 2335400 2207700 2669900 1937300 2719300 166380 3388800 4074100 4423800 2503600 2445000 2389300 2160000 2565200 1 1 0 1 1 1 1 1 1 1 1 2081000 2912500 0 3334600 4302100 4458100 2369600 2300400 2335400 2207700 2669900 1937300 2719300 166380 3388800 4074100 4423800 2503600 2445000 2389300 2160000 2565200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 661340000 509390000 151960000 12571 142 11678 66745;66746 80701 80701 1 LRDLMLR Unmodified 915.53241 0.53240632 2103 Q86U86;Q86U86-8;Q86U86-5;Q86U86-4;Q86U86-7;Q86U86-3;Q86U86-9;Q86U86-2 PBRM1 Protein polybromo-1 yes no 0 0 0 1 By MS/MS By MS/MS 6.25 2.49 1 1 2 2 2 40.215 40.461 3 0.014149 11511 20211116_3435_TMUAki_TMT10x_P_F7 81.784 17.519 10106000 14985000 0 15700000 12337000 14167000 10855000 10168000 10164000 10891000 12038000 9409500 13985000 801910 15943000 11787000 14438000 11067000 10561000 10437000 10607000 11554000 4 4 0 4 4 4 4 4 4 4 4 5234600 7481200 0 8027900 7326000 9366600 5407600 5219600 5257000 5548300 5982700 4873700 6982800 440090 8171200 6974800 9366300 5580800 5526100 5380400 5405300 5748800 2 2 0 2 2 2 2 2 2 2 2 4871800 7503600 0 7671900 5010800 4800900 5447200 4948100 4907100 5342300 6055000 4535800 7002300 361820 7771700 4812700 5071200 5485800 5035300 5056500 5201300 5805600 2 2 0 2 2 2 2 2 2 2 2 1110000000 602600000 507430000 12572 2103 11679 66747;66748;66749;66750 80702;80703;80704;80705 80702 4 LRDPSGDFSVR Unmodified 1247.6258 0.62584901 2438 Q96E14 RMI2 RecQ-mediated genome instability protein 2 yes yes 0 0 0 1 By MS/MS 5 0 1 1 38.031 38.177 3 5.5881E-05 8804 20211116_3444_TMUAki_TMT10x_S_F5 94.402 65.315 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12573 2438 11680 66751 80706 80706 1 LRDTDTLDLSGPAR Unmodified 1528.7845 0.7845345 257 O60231 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 yes yes 0 0 0 1 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 42.126 42.075 3 1.0899E-09 12468 20211116_3430_TMUAki_TMT10x_P_F3 113.67 71.357 2007400 3551700 0 3387800 2097300 1527600 1838500 2735300 2698200 2267900 2851800 1868800 3313500 136010 3439900 2002400 1698100 1905000 2706200 2712800 2234200 2746200 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2007400 3551700 0 3387800 2097300 1527600 1838500 2735300 2698200 2267900 2851800 1868800 3313500 136010 3439900 2002400 1698100 1905000 2706200 2712800 2234200 2746200 2 2 0 2 2 2 2 2 2 2 2 104170000 0 104170000 12574 257 11681 66752;66753;66754 80707;80708 80707 2 LRDYIWNTLNSGR Unmodified 1606.8216 0.82158871 330 O75390 CS Citrate synthase, mitochondrial yes yes 0 0 0 1 By MS/MS 5 0 1 1 64.773 64.911 3 2.4723E-13 20735 20211116_3433_TMUAki_TMT10x_P_F5 143.08 121.52 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12575 330 11682 66755 80709 80709 1 LREAGLAPVPMIIFAK Oxidation (M) 1740.996 0.9960476 512 P06132 UROD Uroporphyrinogen decarboxylase yes yes 0 0 1 1 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 69.225 69.044 3 0.014854 25022 20211116_3441_TMUAki_TMT10x_S_F3 51.606 38.626 7845400 12175000 202730 11308000 8008600 10858000 8387300 9993100 10524000 9699300 10358000 7306200 11357000 823190 11591000 7699600 11070000 8554000 10195000 10607000 9484900 9997300 2 2 1 2 2 2 2 2 2 2 2 3433500 4728600 0 4110400 3150500 6355300 3805100 3186100 3341800 3330500 3891600 3196800 4410000 262230 4270600 3036100 6264600 3811100 3403700 3439500 3246800 3737000 1 1 0 1 1 1 1 1 1 1 1 4411900 7445900 202730 7197800 4858100 4503200 4582200 6807000 7182400 6368800 6466600 4109400 6946900 560970 7320200 4663500 4805500 4742800 6791500 7167600 6238100 6260200 1 1 1 1 1 1 1 1 1 1 1 860500000 379360000 481140000 12576 512 11683 66756;66757;66758 80710;80711 80711 415 2 LREAGLVAQHPPARR Unmodified 1669.9489 0.94885491 2636 Q9BRJ6 C7orf50 Uncharacterized protein C7orf50 yes yes 0 0 0 2 By MS/MS 3 0 1 1 29.914 29.651 5 0.012351 8899 20211116_3441_TMUAki_TMT10x_S_F3 56.29 36.281 129140 207270 0 181700 132890 118860 163370 117650 135860 129830 145520 120220 193310 8133.6 186240 128020 124940 163270 120050 139760 126290 140080 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 129140 207270 0 181700 132890 118860 163370 117650 135860 129830 145520 120220 193310 8133.6 186240 128020 124940 163270 120050 139760 126290 140080 1 1 0 1 1 1 1 1 1 1 1 4704400 0 4704400 12577 2636 11684 66759 80712 80712 1 LRECELSPGVNR Unmodified 1428.7143 0.71434645 2715 Q9BXP5;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3 SRRT Serrate RNA effector molecule homolog yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 33.496 33.482 3 9.6184E-20 8059 20211116_3433_TMUAki_TMT10x_P_F5 228.76 207.29 1833500 2709600 4377.6 3029800 5888800 4473000 2158300 2181000 2489300 1919400 2619500 1706900 2529600 178010 3089800 5550700 4416300 2394600 2325400 2522600 1885300 2522900 2 2 1 2 2 2 2 2 2 2 2 1833500 2709600 4377.6 3029800 5888800 4473000 2158300 2181000 2489300 1919400 2619500 1706900 2529600 178010 3089800 5550700 4416300 2394600 2325400 2522600 1885300 2522900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 379810000 379810000 0 12578 2715 11685 66760;66761 80713;80714 80714 2 LRECLPLIIFLR Unmodified 1541.9116 0.91158969 1362 P62701 RPS4X 40S ribosomal protein S4, X isoform yes yes 0 0 0 1 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 62.978 62.986 3 8.6782E-16 24965 20211116_3434_TMUAki_TMT10x_P_F6 195.72 122.26 39317000 64070000 253930 59693000 37122000 54102000 42324000 26398000 18277000 28236000 38511000 36610000 59767000 2440600 61122000 35740000 54838000 41915000 28292000 20364000 27501000 36524000 7 7 4 7 7 7 7 7 7 7 7 25376000 39653000 210900 37301000 22925000 41819000 26647000 17310000 11323000 17551000 24360000 23629000 36992000 1252400 38287000 22087000 41773000 26360000 18844000 12653000 17132000 23095000 4 4 2 4 4 4 4 4 4 4 4 13941000 24416000 43033 22392000 14198000 12283000 15677000 9087400 6954100 10685000 14151000 12981000 22775000 1188300 22835000 13652000 13065000 15555000 9448500 7711700 10369000 13428000 3 3 2 3 3 3 3 3 3 3 3 4958000000 2239200000 2718800000 12579 1362 11686 66762;66763;66764;66765;66766 80715;80716;80717;80718;80719;80720;80721 80717 7 LREDENAEPVGTTYQK Unmodified 1848.8854 0.88537076 1858 Q16643;Q16643-3;Q16643-2 DBN1 Drebrin yes no 0 0 0 1 By MS/MS By MS/MS 2.5 1.12 1 1 1 1 3 1 37.738 37.622 3 7.9545E-29 12041 20211116_3441_TMUAki_TMT10x_S_F3 182.57 160.2 2766600 4357100 8164.3 5484400 12837000 5755100 3747200 2837800 4054200 2344600 4751900 2575900 4069800 358730 5519400 12080000 5780600 4285700 3017700 4135700 2310200 4562300 4 4 1 4 4 4 4 4 4 4 4 2081200 3226400 8164.3 4097200 12081000 5140700 2984600 2175500 3135400 1712700 3512500 1937800 3013900 311250 4133900 11355000 5106000 3507600 2347700 3196500 1691800 3376700 3 3 1 3 3 3 3 3 3 3 3 685450 1130700 0 1387200 756710 614330 762590 662290 918750 631920 1239400 638140 1056000 47476 1385500 725040 674590 778060 670050 939210 618420 1185700 1 1 0 1 1 1 1 1 1 1 1 332050000 276980000 55070000 12580 1858 11687 66767;66768;66769;66770 80722;80723;80724;80725 80725 4 LREDLER Unmodified 929.49304 0.49304393 1345 P62269 RPS18 40S ribosomal protein S18 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 30.91 30.75 3 0.0022274 7814 20211116_3429_TMUAki_TMT10x_P_F2 114.64 58.462 7700600 12249000 9873.8 13608000 4797600 9017900 6513400 5024600 4480600 5753800 8096500 7169900 11434000 572550 13718000 4641600 9380200 6454200 5332000 4775500 5589400 7698500 3 3 1 3 3 3 3 3 3 3 3 3279600 5174800 9873.8 5374800 2563800 5585600 2032700 2138600 2160400 2487500 3392400 3053600 4829400 259580 5472200 2444800 5599800 2093600 2358800 2236000 2415100 3234400 2 2 1 2 2 2 2 2 2 2 2 4421000 7073700 0 8233400 2233800 3432300 4480700 2886000 2320200 3266200 4704100 4116200 6604900 312970 8245700 2196800 3780400 4360600 2973200 2539600 3174300 4464100 1 1 0 1 1 1 1 1 1 1 1 399810000 328420000 71385000 12581 1345 11688 66771;66772;66773 80726;80727 80727 2 LREEEVDADAADAAAAEEEDGEFLGMK Oxidation (M) 2896.2556 0.25564152 2752 Q9GZM5 YIPF3 Protein YIPF3;Protein YIPF3, 36 kDa form III yes yes 0 0 1 1 By matching By MS/MS 1 0 2 1 1 65.87 65.751 3 8.9945E-18 22529 20211116_3439_TMUAki_TMT10x_S_F1 132.39 123.3 1520100 2930400 158.35 2680900 2443400 2266700 2072400 2516500 2393600 2521800 2503000 1415200 2733400 116420 2746400 2332100 2340300 2131500 2546200 2424900 2462700 2411200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1520100 2930400 158.35 2680900 2443400 2266700 2072400 2516500 2393600 2521800 2503000 1415200 2733400 116420 2746400 2332100 2340300 2131500 2546200 2424900 2462700 2411200 2 2 1 2 2 2 2 2 2 2 2 799690000 337990000 461700000 12582 2752 11689 66774;66775 80728;80729 80729 2935 2 LREELGLCER Unmodified 1273.6449 0.6448699 1564 Q12789;Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 yes no 0 0 0 1 By MS/MS 4 0 1 1 39.522 39.72 3 0.0024297 10656 20211116_3442_TMUAki_TMT10x_S_F4 77.644 28.646 610150 1070400 12941 1057200 653320 589420 588050 724470 710060 686400 813010 568200 998730 63251 1072500 625580 632350 603670 728640 720680 671950 781090 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 610150 1070400 12941 1057200 653320 589420 588050 724470 710060 686400 813010 568200 998730 63251 1072500 625580 632350 603670 728640 720680 671950 781090 1 1 1 1 1 1 1 1 1 1 1 23086000 0 23086000 12583 1564 11690 66776 80730 80730 1 LREIELLCQEHGQENDDLVQR Unmodified 2593.2555 0.25546278 1816 Q15555;Q15555-4;Q15555-5;Q15555-3 MAPRE2 Microtubule-associated protein RP/EB family member 2 yes no 0 0 0 1 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 53.553 53.391 4 3.7942E-14 17500 20211116_3430_TMUAki_TMT10x_P_F3 135.91 122.98 2424100 3985000 7766.8 3851600 2953700 3383500 2333000 2886700 2641500 2791200 2780200 2257100 3718000 210990 3931700 2816700 3464600 2408500 2957200 2678700 2730000 2677700 2 2 1 2 2 2 2 2 2 2 2 1270600 1903400 0 1937600 1712500 2523200 1502900 1541300 1471100 1393600 1436400 1183000 1776200 106890 1983000 1636400 2512300 1534500 1612200 1496700 1367200 1386700 1 1 0 1 1 1 1 1 1 1 1 1153500 2081700 7766.8 1913900 1241200 860240 830070 1345500 1170400 1397600 1343900 1074100 1941800 104100 1948600 1180300 952250 874010 1345100 1181900 1362800 1291000 1 1 1 1 1 1 1 1 1 1 1 987780000 401890000 585890000 12584 1816 11691 66777;66778;66779 80731;80732 80731 2 LREIFGLYGQTTGK Unmodified 1581.8515 0.85149185 2919 Q9NR31;Q9NR31-2 SAR1A GTP-binding protein SAR1a yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 65.289 65.17 3 2.2989E-23 20522 20211116_3431_TMUAki_TMT10x_P_F4 183.23 142.18 29166000 44150000 260540 53308000 26072000 34191000 26984000 17499000 19274000 19826000 28610000 27158000 41231000 2617500 53451000 25038000 35636000 27085000 18704000 20277000 19267000 27310000 3 3 3 3 3 3 3 3 3 3 3 18965000 27612000 237360 34577000 17745000 26137000 16429000 11215000 12897000 12734000 18386000 17660000 25791000 1776400 34656000 16996000 26812000 16624000 12201000 13470000 12374000 17567000 2 2 2 2 2 2 2 2 2 2 2 10201000 16538000 23177 18731000 8327200 8054100 10555000 6283400 6377300 7091800 10223000 9498300 15440000 841090 18794000 8041900 8823800 10461000 6502100 6807100 6893000 9743200 1 1 1 1 1 1 1 1 1 1 1 3991200000 2465400000 1525800000 12585 2919 11692 66780;66781;66782;66783 80733;80734;80735;80736 80734 4 LREIQPCLAESR Unmodified 1470.7613 0.76129664 310 O75150;O75150-4 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 38.861 38.993 3 5.0085E-08 8786 20211116_3434_TMUAki_TMT10x_P_F6 116.58 99.25 1013500 1705700 29865 2007800 1128900 896480 972670 1388200 1519200 1183500 1554600 943900 1592700 113480 2010400 1080400 992880 1011700 1380500 1522900 1164300 1498600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1013500 1705700 29865 2007800 1128900 896480 972670 1388200 1519200 1183500 1554600 943900 1592700 113480 2010400 1080400 992880 1011700 1380500 1522900 1164300 1498600 2 2 2 2 2 2 2 2 2 2 2 45139000 0 45139000 12586 310 11693 66784;66785 80737;80738;80739 80737 3 LRELGPDGEEAEGPGAGDGPPR Unmodified 2175.0192 0.019238477 720 P18615;P18615-3 NELFE Negative elongation factor E yes no 0 0 0 1 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 40.028 39.876 3 4.5801E-68 10026 20211116_3440_TMUAki_TMT10x_S_F2 246.26 236.34 1471900 2541400 9246.3 3083400 2853000 3006800 1624900 2478200 2878900 1940500 2448800 1370500 2373400 137180 3106100 2704400 3056000 1751300 2530200 2858600 1917300 2375600 5 5 2 5 5 5 5 5 5 5 5 731750 1318900 7309.3 1476400 2327400 2452100 1155200 1229000 1441300 998510 1244800 681330 1231200 82823 1509600 2202200 2410400 1241900 1304400 1446800 984690 1206900 2 2 1 2 2 2 2 2 2 2 2 740160 1222500 1937 1607000 525540 554700 469750 1249200 1437600 941970 1204000 689130 1142100 54358 1596500 502250 645600 509360 1225900 1411900 932640 1168600 3 3 1 3 3 3 3 3 3 3 3 213830000 118930000 94900000 12587 720 11694 66786;66787;66788;66789 80740;80741;80742;80743;80744 80743 5 LRELLIIGGVAAR Unmodified 1379.8613 0.86126868 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 1 By MS/MS By MS/MS 4.75 0.829 4 2 2 4 4 67.849 67.833 2;3 2.8945E-28 21728 20211116_3431_TMUAki_TMT10x_P_F4 209.11 140.26 8272100 12639000 58868 14220000 7193800 8800000 7646400 5323900 5410500 5663400 8398100 7702500 11800000 717110 14314000 6912200 9221100 7663200 5598500 5708100 5517200 8008900 4 4 3 4 4 4 4 4 4 4 4 3486100 5291100 2915.6 5724200 3572300 5044100 2969100 2464800 2517300 2469500 3278700 3245800 4938800 284480 5798800 3409700 5122600 3029300 2636400 2607700 2411700 3139300 2 2 1 2 2 2 2 2 2 2 2 4786000 7348300 55952 8496300 3621600 3756000 4677300 2859100 2893200 3193900 5119400 4456700 6861000 432630 8515700 3502400 4098600 4633900 2962200 3100400 3105500 4869600 2 2 2 2 2 2 2 2 2 2 2 2057200000 824530000 1232700000 12588 2334 11695 66790;66791;66792;66793;66794;66795;66796;66797 80745;80746;80747;80748;80749;80750;80751;80752;80753 80746 9 LRELSFSGIPCEGGLR Unmodified 1789.9145 0.91450282 2968 Q9NVG8;Q9NVG8-2 TBC1D13 TBC1 domain family member 13 yes no 0 0 0 1 By MS/MS 8 0 1 1 58.672 58.85 3 0.00021516 17694 20211116_3436_TMUAki_TMT10x_P_F8 75.91 58.884 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12589 2968 11696 66798 80754 80754 1 LREMESNWVSLVSK Unmodified 1676.8556 0.85559095 368 O75934 BCAS2 Pre-mRNA-splicing factor SPF27 yes yes 0 0 0 1 By MS/MS 2 0 1 1 71.906 71.768 3 0.066313 23158 20211116_3440_TMUAki_TMT10x_S_F2 42.191 23.826 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12590 368 11697 66799 80755 80755 1 LRENVFQEHQTLK Unmodified 1640.8635 0.86345352 1699 Q14247;Q14247-3;Q14247-2 CTTN Src substrate cortactin yes no 0 0 0 1 By MS/MS By matching 5.33 0.471 2 1 2 1 38.403 38.448 4 5.2022E-09 8639 20211116_3434_TMUAki_TMT10x_P_F6 126.09 100.61 2043700 2970100 19386 3917200 5351900 4972100 2481800 2292200 2501900 2085400 2532900 1902900 2775000 212060 3945100 5059200 4940000 2668100 2459600 2545400 2045200 2442500 4 4 2 4 4 4 4 4 4 4 4 2043700 2970100 19386 3917200 5351900 4972100 2481800 2292200 2501900 2085400 2532900 1902900 2775000 212060 3945100 5059200 4940000 2668100 2459600 2545400 2045200 2442500 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 188100000 145000000 43094000 12591 1699 11698 66800;66801;66802 80756;80757;80758;80759 80759 4 LREQVEER Unmodified 1057.5516 0.55162144 103 O00567 NOP56 Nucleolar protein 56 yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 27.79 27.506 3 0.025243 6512 20211116_3429_TMUAki_TMT10x_P_F2 63.076 32.512 499210 858550 0 602140 654100 825920 663670 1156100 1153800 962190 965490 464610 800160 18429 635740 625790 835010 687860 1153000 1145600 947720 937210 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 499210 858550 0 602140 654100 825920 663670 1156100 1153800 962190 965490 464610 800160 18429 635740 625790 835010 687860 1153000 1145600 947720 937210 1 1 0 1 1 1 1 1 1 1 1 3178100 0 3178100 12592 103 11699 66803;66804 80760;80761 80760 2 LREQVLCHPLLEDR Unmodified 1776.9305 0.93048723 2868 Q9HCK8;Q9HCK8-2 CHD8 Chromodomain-helicase-DNA-binding protein 8 yes no 0 0 0 1 By MS/MS 5.5 0.5 1 1 2 42.031 42.177 4 0.001531 10621 20211116_3445_TMUAki_TMT10x_S_F6 72.315 56.425 351520 608710 0 618670 377190 292550 342300 407210 417330 376000 510160 327300 568030 28998 625570 360760 320720 351360 407300 424570 368500 489260 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 351520 608710 0 618670 377190 292550 342300 407210 417330 376000 510160 327300 568030 28998 625570 360760 320720 351360 407300 424570 368500 489260 1 1 0 1 1 1 1 1 1 1 1 48623000 0 48623000 12593 2868 11700 66805;66806 80762 80762 1 LREQVVK Unmodified 870.5287 0.52870115 680 P15121 AKR1B1 Aldose reductase yes yes 0 0 0 1 By MS/MS 5 0 1 1 32.041 31.981 3 0.0033855 7501 20211116_3433_TMUAki_TMT10x_P_F5 103.74 61.14 1106900 1704200 7611.5 1596000 1607800 1793500 1257100 848720 913690 933940 1243300 1030700 1589800 105880 1638800 1533300 1793700 1282900 913150 956250 908630 1189200 1 1 1 1 1 1 1 1 1 1 1 1106900 1704200 7611.5 1596000 1607800 1793500 1257100 848720 913690 933940 1243300 1030700 1589800 105880 1638800 1533300 1793700 1282900 913150 956250 908630 1189200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 40418000 40418000 0 12594 680 11701 66807 80763 80763 1 LREQYGLGPYEAVTPLTK Unmodified 2034.0786 0.078591257 1573 Q12888;Q12888-3;Q12888-2 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 0 1 By MS/MS 8 0 1 1 60.373 60.559 3 4.621E-08 18409 20211116_3436_TMUAki_TMT10x_P_F8 107.69 88.367 6148000 11090000 166710 10072000 7656300 14181000 7892100 8442400 8516100 8720800 8851600 5725400 10344000 654320 10408000 7355200 14064000 8012200 8881600 8648200 8505700 8528400 3 3 2 3 3 3 3 3 3 3 3 6148000 11090000 166710 10072000 7656300 14181000 7892100 8442400 8516100 8720800 8851600 5725400 10344000 654320 10408000 7355200 14064000 8012200 8881600 8648200 8505700 8528400 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 668710000 668710000 0 12595 1573 11702 66808 80764;80765;80766 80765 3 LRETLNISGPPLK Unmodified 1436.8351 0.83511351 846 P28838;P28838-2 LAP3 Cytosol aminopeptidase yes no 0 0 0 1 By MS/MS 2 0 1 1 53.414 53.231 3 1.4348E-05 15623 20211116_3440_TMUAki_TMT10x_S_F2 88.075 64.089 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12596 846 11703 66809 80767 80767 1 LREVVETPLLHPER Unmodified 1686.9417 0.94170385 945 P35998;P35998-2 PSMC2 26S protease regulatory subunit 7 yes no 0 0 0 1 By MS/MS By MS/MS 5.17 0.687 1 3 2 2 4 46.157 46.307 3;4 8.0537E-15 12281 20211116_3445_TMUAki_TMT10x_S_F6 159.22 143.08 14594000 23967000 155660 24479000 22899000 23327000 15886000 25406000 23109000 19960000 22103000 13589000 22366000 1397000 24919000 21785000 23882000 16704000 25563000 23157000 19718000 21353000 10 10 7 10 10 10 10 10 10 10 10 7052800 11223000 37315 11419000 15446000 16767000 9638500 10404000 9876900 9089800 9625600 6566600 10473000 664140 11715000 14662000 16608000 10088000 10860000 10029000 8931700 9293200 5 5 3 5 5 5 5 5 5 5 5 7541200 12744000 118350 13061000 7453700 6559700 6247100 15002000 13232000 10870000 12478000 7022500 11892000 732830 13204000 7123700 7273300 6616000 14703000 13129000 10786000 12060000 5 5 4 5 5 5 5 5 5 5 5 3568400000 1603700000 1964700000 12597 945 11704 66810;66811;66812;66813;66814;66815 80768;80769;80770;80771;80772;80773;80774;80775;80776;80777 80777 10 LREYEAALNSK Unmodified 1292.6725 0.67246486 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 1 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 46.323 46.594 3 1.8152E-16 12402 20211116_3445_TMUAki_TMT10x_S_F6 213.99 171.95 19106000 29772000 167920 33669000 33009000 26929000 21472000 22931000 25365000 20859000 26370000 17791000 27795000 1909800 33972000 31369000 27759000 22504000 23454000 25670000 20458000 25407000 7 7 5 7 7 7 7 7 7 7 7 8582200 12912000 53577 14704000 22141000 18152000 10583000 10277000 11061000 9104500 11857000 7991100 12055000 931400 14925000 20941000 18103000 11354000 10811000 11260000 8940200 11413000 3 3 2 3 3 3 3 3 3 3 3 10524000 16860000 114340 18965000 10868000 8776700 10889000 12654000 14305000 11755000 14513000 9799600 15740000 978420 19047000 10428000 9656800 11150000 12643000 14411000 11517000 13994000 4 4 3 4 4 4 4 4 4 4 4 2700100000 1614000000 1086100000 12598 748 11705 66816;66817;66818;66819;66820;66821 80778;80779;80780;80781;80782;80783;80784 80783 7 LRFDFTAK Unmodified 996.53927 0.53926584 1104 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 1 By MS/MS 2 0 1 1 53.677 53.426 3 0.062429 16987 20211116_3429_TMUAki_TMT10x_P_F2 52.549 37.289 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12599 1104 11706 66822 80785 80785 1 LRFDIEGSDEADGSK Unmodified 1637.7533 0.75329395 515 P06400 RB1 Retinoblastoma-associated protein yes yes 0 0 0 1 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 50.844 50.726 3 1.1367E-09 17424 20211116_3441_TMUAki_TMT10x_S_F3 130.87 96.605 9609900 15435000 48825 15197000 10736000 11385000 8892500 14504000 14502000 12266000 13235000 8947000 14402000 727410 15463000 10243000 11903000 9290100 14522000 14463000 12072000 12807000 4 4 2 4 4 4 4 4 4 4 4 2507600 4049500 0 3354400 3804800 5439800 3318200 3777800 3625300 3224400 3387600 2334600 3776000 199280 3502300 3634300 5375700 3400700 3908300 3666300 3171900 3275300 1 1 0 1 1 1 1 1 1 1 1 7102300 11386000 48825 11842000 6931600 5944900 5574300 10726000 10877000 9041300 9847800 6612500 10626000 528130 11961000 6608500 6527400 5889300 10614000 10797000 8899600 9531600 3 3 2 3 3 3 3 3 3 3 3 610080000 201500000 408580000 12600 515 11707 66823;66824;66825 80786;80787;80788;80789 80787 4 LRFEPVR Unmodified 915.52904 0.5290355 1797 Q15392;Q15392-2 DHCR24 Delta(24)-sterol reductase yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 35.909 35.892 3 0.0032251 10288 20211116_3439_TMUAki_TMT10x_S_F1 105.25 55.891 1059200 1544400 110340 1980400 1600300 1505200 1177600 1183800 1085700 1173500 1399600 987040 1442800 198230 1982500 1530500 1555500 1213800 1219500 1119700 1146500 1340500 2 2 2 2 2 2 2 2 2 2 2 488640 680260 50477 952670 1003900 968180 572280 562890 510590 568300 652810 455350 635780 94772 952870 954820 976250 601150 592930 527180 554800 625340 1 1 1 1 1 1 1 1 1 1 1 570560 864180 59864 1027800 596410 537000 605360 620910 575120 605160 746830 531700 806980 103460 1029600 575720 579220 612640 626600 592510 591680 715130 1 1 1 1 1 1 1 1 1 1 1 74671000 37499000 37172000 12601 1797 11708 66826;66827 80790;80791 80791 2 LRFEPVRGLEAICAK Unmodified 1757.9611 0.96105908 1797 Q15392;Q15392-2 DHCR24 Delta(24)-sterol reductase yes no 0 0 0 2 By MS/MS 3 0 1 1 56.779 56.563 4 1.0446E-06 18683 20211116_3430_TMUAki_TMT10x_P_F3 115.56 95.433 2583800 3986600 52082 4023500 3521200 5300900 3145100 3455500 2743200 2939800 3439100 2406100 3720000 275880 4121100 3370000 5279900 3197400 3591000 2833000 2892400 3296100 1 1 1 1 1 1 1 1 1 1 1 2583800 3986600 52082 4023500 3521200 5300900 3145100 3455500 2743200 2939800 3439100 2406100 3720000 275880 4121100 3370000 5279900 3197400 3591000 2833000 2892400 3296100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 881960000 881960000 0 12602 1797 11709 66828 80792 80792 1 LRFEQER Unmodified 976.50903 0.50902834 1858 Q16643;Q16643-3;Q16643-2 DBN1 Drebrin yes no 0 0 0 1 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 31.383 31.289 3 0.00091669 6876 20211116_3431_TMUAki_TMT10x_P_F4 134.15 98.901 1583800 2609800 22479 2294800 2484900 3652300 1659200 1361900 1419300 1286900 1765800 1474800 2434000 164880 2383600 2363300 3585500 1718800 1498000 1466700 1260000 1692700 3 3 3 3 3 3 3 3 3 3 3 1325500 2146200 20608 1867800 2150900 3316800 1332000 1119900 1168900 1056400 1444100 1234300 2001600 140660 1946800 2043000 3240200 1388900 1247600 1206100 1034300 1384500 2 2 2 2 2 2 2 2 2 2 2 258290 463610 1870.9 426980 334050 335470 327230 241950 250340 230590 321730 240510 432460 24219 436810 320240 345300 329900 250370 260580 225670 308150 1 1 1 1 1 1 1 1 1 1 1 105190000 68274000 36919000 12603 1858 11710 66829;66830;66831 80793;80794;80795 80793 3 LRFPAEDEFPDLSAHNNHMAK Oxidation (M) 2454.1386 0.13864211 642 P12277 CKB Creatine kinase B-type yes yes 0 0 1 1 By MS/MS By MS/MS 6.5 1.12 2 2 2 2 4 4 50.014 50.233 5 7.9438E-14 15323 20211116_3435_TMUAki_TMT10x_P_F7 129.02 117.91 47159000 79369000 724900 89781000 61008000 77030000 47171000 59628000 61734000 62377000 64229000 43913000 74098000 4427400 90666000 58171000 78868000 49022000 61586000 62255000 60807000 61882000 12 12 7 12 12 12 12 12 12 12 12 20666000 33259000 184090 35614000 35093000 50257000 26941000 25083000 26253000 25129000 26646000 19241000 31043000 1838500 36385000 33438000 49729000 27732000 26775000 26752000 24540000 25692000 5 5 1 5 5 5 5 5 5 5 5 26494000 46110000 540810 54168000 25916000 26773000 20230000 34545000 35481000 37248000 37583000 24672000 43055000 2589000 54281000 24732000 29139000 21290000 34811000 35503000 36267000 36190000 7 7 6 7 7 7 7 7 7 7 7 18276000000 9008000000 9268400000 12604 642 11711 66832;66833;66834;66835;66836;66837;66838;66839 80796;80797;80798;80799;80800;80801;80802;80803;80804;80805;80806;80807 80799 683 12 LRFPAEDEFPDLSAHNNHMAK Unmodified 2438.1437 0.14372748 642 P12277 CKB Creatine kinase B-type yes yes 0 0 0 1 By MS/MS By MS/MS 6.29 1.03 2 2 2 1 3 4 52.955 53.199 5 3.8042E-69 17078 20211116_3446_TMUAki_TMT10x_S_F7 257.2 243.16 58389000 96482000 1170200 114480000 60808000 62618000 54100000 37294000 32236000 41212000 65263000 54371000 90095000 5589900 114740000 58183000 66421000 54550000 39313000 34923000 40089000 61935000 12 12 8 12 12 12 12 12 12 12 12 19372000 30011000 169820 35237000 24275000 31737000 21724000 13462000 10777000 12327000 20370000 18037000 28023000 1646400 35526000 23210000 32137000 21830000 14575000 11783000 12086000 19353000 4 4 2 4 4 4 4 4 4 4 4 39016000 66471000 1000400 79238000 36533000 30881000 32376000 23832000 21460000 28885000 44893000 36334000 62072000 3943500 79211000 34973000 34284000 32720000 24738000 23141000 28003000 42582000 8 8 6 8 8 8 8 8 8 8 8 7411300000 3412900000 3998400000 12605 642 11711 66840;66841;66842;66843;66844;66845;66846 80808;80809;80810;80811;80812;80813;80814;80815;80816;80817;80818;80819 80815 12 LRGEVGLLFTNR Unmodified 1373.7779 0.77793298 3154 Q9UKD2 MRTO4 mRNA turnover protein 4 homolog yes yes 0 0 0 1 By MS/MS By MS/MS 6 2 1 1 1 1 54.691 54.807 3 0.00024617 16122 20211116_3436_TMUAki_TMT10x_P_F8 86.498 56.513 1027600 1551800 11620 1607300 1476300 2145600 1430300 1494600 1252000 1355000 1490400 956840 1448200 102310 1643800 1415100 2138000 1447700 1548200 1290000 1329100 1430300 1 1 1 1 1 1 1 1 1 1 1 1027600 1551800 11620 1607300 1476300 2145600 1430300 1494600 1252000 1355000 1490400 956840 1448200 102310 1643800 1415100 2138000 1447700 1548200 1290000 1329100 1430300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 116640000 116640000 0 12606 3154 11712 66847;66848 80820;80821 80820 2 LRGIEQAVQSHAVAEEEAR Unmodified 2092.0661 0.06612909 1872 Q16891;Q16891-2;Q16891-4;Q16891-3 IMMT MICOS complex subunit MIC60 yes no 0 0 0 1 By MS/MS By MS/MS 3.8 0.748 2 2 1 1 4 46.692 46.731 3;4 1.6429E-17 13427 20211116_3442_TMUAki_TMT10x_S_F4 148.83 136.86 3764500 5947800 37883 7241900 3640500 3638700 2912400 5596100 5428800 4609000 5404200 3505400 5554800 334290 7242600 3473900 3973100 3070100 5561400 5411800 4542100 5214000 4 4 2 4 4 4 4 4 4 4 4 659520 1036900 9903.5 1084100 1309500 1407600 843150 777380 677360 765740 916290 614150 967740 73012 1107500 1244500 1399800 874500 821840 704830 748340 876520 1 1 1 1 1 1 1 1 1 1 1 3105000 4910900 27979 6157700 2331000 2231100 2069200 4818700 4751400 3843300 4487900 2891200 4587000 261280 6135100 2229400 2573300 2195600 4739500 4707000 3793800 4337400 3 3 1 3 3 3 3 3 3 3 3 1306400000 314830000 991540000 12607 1872 11713 66849;66850;66851;66852;66853 80822;80823;80824;80825 80824 4 LRGISTKPVYIPEVELNHK Unmodified 2192.2317 0.23173786 1702 Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 0 0 0 2 By MS/MS By matching 2 0 2 1 1 53.566 53.349 5 0.016049 16982 20211116_3429_TMUAki_TMT10x_P_F2 46.027 37.382 1489800 2171000 53527 2429400 2391000 3069600 1784600 2214200 1979300 1922700 1983700 1387600 2026700 186020 2469700 2280600 3068400 1847900 2285700 2005300 1889800 1913500 1 1 1 1 1 1 1 1 1 1 1 1489800 2171000 53527 2429400 2391000 3069600 1784600 2214200 1979300 1922700 1983700 1387600 2026700 186020 2469700 2280600 3068400 1847900 2285700 2005300 1889800 1913500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 202560000 114570000 87984000 12608 1702 11714 66854;66855 80826 80826 1 LRGNQYK Unmodified 877.477 0.47699993 1458 P84157;P84157-2;P84157-3 MXRA7 Matrix-remodeling-associated protein 7 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 28.863 28.903 3 0.022099 5618 20211116_3428_TMUAki_TMT10x_P_F1 73.637 43.83 329700 564550 3564.1 450460 394020 428920 395880 251430 295760 267900 410200 307010 526360 31557 467280 378060 434290 398360 265090 309320 260970 392170 2 2 2 2 2 2 2 2 2 2 2 166170 261280 1925.8 214990 191010 273670 175930 116890 146400 129990 197110 154730 243630 15919 223470 182880 271660 178320 127150 152030 126420 188580 1 1 1 1 1 1 1 1 1 1 1 163540 303270 1638.3 235470 203010 155240 219950 134540 149360 137910 213090 152280 282730 15638 243800 195180 162640 220040 137940 157300 134550 203590 1 1 1 1 1 1 1 1 1 1 1 7543700 4363300 3180400 12609 1458 11715 66856;66857 80827;80828 80827 2 LRGPNPK Unmodified 780.46062 0.46062159 705 P17480;P17480-2 UBTF Nucleolar transcription factor 1 yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 28.86 28.809 3 0.010961 7412 20211116_3439_TMUAki_TMT10x_S_F1 87.284 53.206 1303300 2149900 27530 1811900 1457800 1832000 1418000 928710 1211400 1110800 1524600 1213700 2004800 135870 1872600 1398400 1844800 1434000 995280 1252500 1077400 1461000 3 3 3 3 3 3 3 3 3 3 3 1019900 1616600 24995 1391500 1105500 1530900 1047600 714740 924680 868890 1174200 949840 1507600 109050 1437500 1060100 1532700 1061900 772510 954940 842250 1124900 2 2 2 2 2 2 2 2 2 2 2 283370 533280 2535.1 420380 352250 301060 370350 213960 286710 241960 350420 263870 497180 26821 435050 338360 312100 372120 222780 297600 235160 336070 1 1 1 1 1 1 1 1 1 1 1 66246000 54191000 12056000 12610 705 11716 66858;66859;66860 80829;80830;80831 80831 3 LRGPSGGGEEPALSQYQR Unmodified 1900.9391 0.93913766 2584 Q99567 NUP88 Nuclear pore complex protein Nup88 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0 3 2 1 36.786 36.853 3 4.9532E-71 8192 20211116_3444_TMUAki_TMT10x_S_F5 292.35 270.14 312990 487630 5721.3 714760 192360 178080 152860 548580 613760 392020 515150 291470 455860 29592 705100 183800 222850 171380 534380 600720 389320 500000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 312990 487630 5721.3 714760 192360 178080 152860 548580 613760 392020 515150 291470 455860 29592 705100 183800 222850 171380 534380 600720 389320 500000 1 1 1 1 1 1 1 1 1 1 1 219880000 133920000 85951000 12611 2584 11717 66861;66862;66863 80832;80833 80833 2 LRGWEAFLNAPEANR Unmodified 1742.8853 0.8852516 239 O43719 HTATSF1 HIV Tat-specific factor 1 yes yes 0 0 0 1 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 65.108 64.928 3 1.1015E-09 20420 20211116_3440_TMUAki_TMT10x_S_F2 131.18 111.61 19230000 33551000 220970 31664000 26384000 33028000 24887000 26203000 23391000 24389000 26109000 17907000 31300000 1895900 32456000 25273000 33409000 25276000 26932000 23958000 23894000 25102000 3 3 2 3 3 3 3 3 3 3 3 8233500 14651000 0 13656000 12017000 20583000 12939000 12800000 11852000 11994000 11249000 7666200 13668000 731060 14106000 11545000 20366000 13042000 13383000 12084000 11747000 10871000 1 1 0 1 1 1 1 1 1 1 1 10997000 18900000 220970 18007000 14367000 12445000 11948000 13403000 11539000 12395000 14859000 10241000 17632000 1164800 18350000 13728000 13043000 12233000 13549000 11875000 12147000 14231000 2 2 2 2 2 2 2 2 2 2 2 1657700000 1194900000 462870000 12612 239 11718 66864;66865;66866 80834;80835;80836 80835 3 LRGYDYGPHFQGILEASLEGDSGR Unmodified 2636.2619 0.26192836 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 1 By MS/MS By MS/MS 7 0.894 2 1 2 3 2 65.64 65.768 4 6.1787E-17 21798 20211116_3435_TMUAki_TMT10x_P_F7 135.86 124.82 56777000 96611000 377700 91764000 66261000 81719000 63802000 60742000 59847000 58215000 70541000 52864000 90130000 4831000 93807000 63472000 83398000 64724000 62741000 61437000 56960000 67717000 13 13 7 13 13 13 13 13 13 13 13 32688000 54263000 209000 51855000 39942000 60046000 39138000 34525000 33635000 33291000 40601000 30435000 50624000 2744100 53194000 38274000 60092000 39571000 36354000 34706000 32564000 38951000 8 8 4 8 8 8 8 8 8 8 8 24088000 42348000 168700 39909000 26319000 21673000 24664000 26217000 26212000 24925000 29940000 22429000 39506000 2087000 40613000 25198000 23306000 25152000 26387000 26730000 24396000 28766000 5 5 3 5 5 5 5 5 5 5 5 5062800000 3046100000 2016700000 12613 1092 11719 66867;66868;66869;66870;66871 80837;80838;80839;80840;80841;80842;80843;80844;80845;80846;80847;80848;80849 80840 13 LRIEECAAR Unmodified 1116.571 0.57097667 762 P22033 MUT Methylmalonyl-CoA mutase, mitochondrial yes yes 0 0 0 1 By MS/MS 4 0 1 1 31.942 31.971 3 0.0012586 7141 20211116_3431_TMUAki_TMT10x_P_F4 86.014 63.328 701110 1118000 14248 1120000 934710 1225900 750100 539590 598340 602280 762530 652910 1043300 74678 1144000 892460 1226900 765810 585130 621170 585630 730500 1 1 1 1 1 1 1 1 1 1 1 701110 1118000 14248 1120000 934710 1225900 750100 539590 598340 602280 762530 652910 1043300 74678 1144000 892460 1226900 765810 585130 621170 585630 730500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23141000 23141000 0 12614 762 11720 66872 80850 80850 1 LRKDDPLTNLNTAFDVAEK Unmodified 2159.1222 0.12224699 644 P12814;P12814-2;P12814-3;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 2 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 63.644 64.009 4 4.1086E-41 21000 20211116_3435_TMUAki_TMT10x_P_F7 214.24 187.76 23628000 38824000 167380 40518000 27117000 34057000 26088000 27632000 26847000 28635000 29372000 22001000 36233000 2130000 41119000 25983000 34949000 26539000 28449000 27368000 27925000 28256000 5 5 4 5 5 5 5 5 5 5 5 11616000 19121000 29703 19112000 13341000 22228000 13904000 12455000 12414000 14138000 13429000 10816000 17842000 981130 19545000 12805000 22232000 14028000 13207000 12731000 13739000 12923000 2 2 1 2 2 2 2 2 2 2 2 12011000 19703000 137680 21406000 13777000 11830000 12183000 15178000 14433000 14497000 15943000 11185000 18391000 1148900 21574000 13178000 12717000 12511000 15242000 14638000 14186000 15333000 3 3 3 3 3 3 3 3 3 3 3 2966000000 1296600000 1669400000 12615 644 11721 66873;66874;66875 80851;80852;80853;80854;80855 80851 5 LRKDDPVTNLNNAFEVAEK Unmodified 2172.1175 0.11749596 235 O43707 ACTN4 Alpha-actinin-4 yes yes 0 0 0 2 By MS/MS By MS/MS 7 0.707 1 2 1 2 2 58.041 58.366 4 5.5137E-12 16997 20211116_3447_TMUAki_TMT10x_S_F8 126.84 110.44 43222000 78532000 2333000 80938000 53047000 60504000 44864000 59948000 61816000 60323000 66328000 40261000 73288000 5895300 82095000 50799000 62886000 46460000 60991000 62306000 58899000 63845000 4 4 4 4 4 4 4 4 4 4 4 8453400 13817000 100520 13934000 12373000 16979000 10991000 9291000 10636000 10056000 10433000 7871700 12893000 849420 14252000 11835000 16937000 11209000 9857400 10828000 9789500 10071000 1 1 1 1 1 1 1 1 1 1 1 34768000 64715000 2232500 67004000 40674000 43525000 33873000 50657000 51181000 50267000 55895000 32389000 60394000 5045900 67842000 38964000 45949000 35251000 51133000 51477000 49110000 53774000 3 3 3 3 3 3 3 3 3 3 3 3688200000 2333400000 1354800000 12616 235 11722 66876;66877;66878;66879 80856;80857;80858;80859 80859 4 LRKEELSEEGYLAK Unmodified 1663.8781 0.87810054 811 P26358;P26358-2 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 0 0 0 2 By MS/MS 5 0 1 1 45.313 45.467 4 0.037006 11725 20211116_3444_TMUAki_TMT10x_S_F5 48.351 29.107 1474600 2161200 44475 2415100 1360300 976750 1033200 3884700 4307900 2681200 2649400 1373400 2017600 162100 2424300 1298800 1149100 1166500 3766900 4180400 2668200 2607100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1474600 2161200 44475 2415100 1360300 976750 1033200 3884700 4307900 2681200 2649400 1373400 2017600 162100 2424300 1298800 1149100 1166500 3766900 4180400 2668200 2607100 1 1 1 1 1 1 1 1 1 1 1 139190000 0 139190000 12617 811 11723 66880 80860 80860 1 LRLDSIVIQQGR Unmodified 1396.815 0.81504677 260;844 P28370-2;P28370;O60264 SMARCA1;SMARCA5 Probable global transcription activator SNF2L1;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 no no 0 0 0 1 By MS/MS By MS/MS 3.82 2.62 1 4 3 3 6 5 52.243 52.027 2;3 9.9919E-31 16393 20211116_3429_TMUAki_TMT10x_P_F2 265.53 239.49 11711000 19606000 77600 19995000 16994000 19100000 12910000 18183000 16841000 15577000 16081000 10905000 18296000 1087400 20357000 16195000 19492000 13430000 18455000 16934000 15321000 15536000 5 5 2 5 5 5 5 5 5 5 5 6020400 9757800 0 10010000 11060000 14782000 8182500 9071300 8212400 7869500 7998600 5605400 9106000 539820 10265000 10530000 14636000 8451300 9475300 8345800 7735200 7722600 3 3 0 3 3 3 3 3 3 3 3 5691000 9848600 77600 9985200 5934500 4318200 4727200 9111500 8628800 7707500 8082100 5299400 9190300 547550 10092000 5664700 4856400 4978900 8980000 8588200 7585400 7813400 2 2 2 2 2 2 2 2 2 2 2 4223100000 2287500000 1935600000 12618 844;260 11724 66881;66882;66883;66884;66885;66886;66887;66888;66889;66890;66891 80861;80862;80863;80864;80865;80866;80867;80868;80869;80870 80862 10 LRLECADLLETR Unmodified 1487.7766 0.77661235 2009 Q6PI48 DARS2 Aspartate--tRNA ligase, mitochondrial yes yes 0 0 0 1 By matching By MS/MS 4.33 0.471 2 1 1 2 53.558 53.689 3 4.2504E-09 16358 20211116_3442_TMUAki_TMT10x_S_F4 150.22 124.2 6044100 10066000 64726 11709000 5533600 4669500 5024300 6108100 6293200 5811800 7903100 5627900 9398900 516040 11724000 5294500 5223500 5162300 6128800 6403800 5688300 7574000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6044100 10066000 64726 11709000 5533600 4669500 5024300 6108100 6293200 5811800 7903100 5627900 9398900 516040 11724000 5294500 5223500 5162300 6128800 6403800 5688300 7574000 3 3 2 3 3 3 3 3 3 3 3 776140000 225820000 550310000 12619 2009 11725 66892;66893;66894 80871;80872;80873 80872 3 LRLESEGSPETLTNLR Unmodified 1813.9534 0.95339074 3047 Q9P035;Q9P035-2 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes no 0 0 0 1 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 49.594 49.76 3 1.6419E-80 14700 20211116_3442_TMUAki_TMT10x_S_F4 325.33 271.88 11816000 20106000 286980 22732000 17485000 20334000 13108000 15058000 16147000 14251000 16836000 11004000 18771000 1278100 22969000 16670000 20744000 13619000 15552000 16319000 13951000 16220000 5 5 2 5 5 5 5 5 5 5 5 7354600 12272000 286980 13723000 13162000 16312000 9289700 8994300 9647700 8442400 10163000 6850000 11457000 954250 13936000 12540000 16293000 9636500 9497500 9817500 8268100 9787900 3 3 2 3 3 3 3 3 3 3 3 4461600 7834300 0 9008800 4323300 4022000 3818400 6063700 6499800 5808500 6673100 4153800 7314600 323830 9032900 4129800 4450800 3982600 6054500 6501200 5683400 6431900 2 2 0 2 2 2 2 2 2 2 2 2711800000 1317200000 1394600000 12620 3047 11726 66895;66896;66897;66898;66899 80874;80875;80876;80877;80878;80879 80878 6 LRLESEGSPETLTNLRK Unmodified 1942.0484 0.048353761 3047 Q9P035;Q9P035-2 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes no 0 0 0 2 By MS/MS By MS/MS 7 0 2 1 1 46.445 46.973 4 1.2622E-35 14635 20211116_3446_TMUAki_TMT10x_S_F7 205.06 185.99 9089200 15589000 208010 18664000 16503000 17818000 10936000 12142000 12233000 10538000 12644000 8464500 14558000 1051300 18811000 15696000 18077000 11424000 12583000 12403000 10358000 12184000 3 3 3 3 3 3 3 3 3 3 3 6545900 10676000 207490 12699000 14511000 15460000 9095400 8453400 8318300 7515700 8931000 6096400 9969800 847640 12853000 13791000 15421000 9484900 8920300 8518200 7378900 8596400 2 2 2 2 2 2 2 2 2 2 2 2543300 4912400 519.39 5965600 1991700 2358900 1840200 3688400 3914600 3022200 3712500 2368000 4587700 203610 5957600 1905900 2655500 1938700 3663100 3884500 2979100 3587600 1 1 1 1 1 1 1 1 1 1 1 825620000 411170000 414440000 12621 3047 11727 66900;66901 80880;80881;80882 80882 3 LRLQEEITK Unmodified 1128.6503 0.65027285 1220 P54578;P54578-2;P54578-3 USP14 Ubiquitin carboxyl-terminal hydrolase 14 yes no 0 0 0 1 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 42.823 42.938 3 0.052718 10880 20211116_3445_TMUAki_TMT10x_S_F6 54.27 35.138 8197200 11843000 0 13358000 10840000 9605700 8254700 7747500 7110100 6827100 9233200 7631300 11056000 574730 13464000 10319000 9975300 8472900 7943400 7358700 6705600 8841200 2 2 0 2 2 2 2 2 2 2 2 3856000 5480500 0 5924100 7059100 6589700 4142100 4375300 4073900 3765200 4378500 3589800 5115500 307380 6022200 6691600 6622300 4351900 4542000 4158300 3702400 4214400 1 1 0 1 1 1 1 1 1 1 1 4341200 6362500 0 7434100 3780600 3016000 4112700 3372200 3036200 3061900 4854700 4041400 5940900 267350 7442200 3627900 3353000 4121000 3401400 3200400 3003200 4626800 1 1 0 1 1 1 1 1 1 1 1 384790000 227320000 157470000 12622 1220 11728 66902;66903;66904 80883;80884 80884 2 LRLTVVDTPGYGDAINCR Unmodified 2019.0208 0.020758802 1752 Q15019;Q15019-2;Q15019-3 SEPT2 Septin-2 yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 55.282 55.322 3 2.0291E-23 16311 20211116_3436_TMUAki_TMT10x_P_F8 163.56 144.35 5876200 9744100 133320 10016000 7620000 10340000 6996300 8215000 7351400 7877600 8347100 5472300 9093300 635850 10203000 7298800 10466000 7140300 8449600 7498600 7707600 8021400 3 3 3 3 3 3 3 3 3 3 3 4095600 6687600 99765 6901900 5177300 8434800 5081300 5671200 5165100 5397300 5831000 3814100 6241000 447680 7048800 4967800 8436200 5161800 5897300 5274500 5282600 5604400 2 2 2 2 2 2 2 2 2 2 2 1780600 3056500 33555 3113700 2442700 1904900 1915000 2543800 2186300 2480200 2516100 1658200 2852300 188170 3154400 2331000 2029500 1978500 2552200 2224000 2425000 2417000 1 1 1 1 1 1 1 1 1 1 1 1478500000 704280000 774240000 12623 1752 11729 66905;66906;66907 80885;80886;80887;80888 80885 4 LRNELQTDKPFIPLVEK Unmodified 2039.1415 0.14152586 2838 Q9H993 ARMT1 Protein-glutamate O-methyltransferase yes yes 0 0 0 2 By MS/MS By matching 7.5 0.5 2 2 2 2 60.846 61.198 4 1.5546E-10 18640 20211116_3436_TMUAki_TMT10x_P_F8 123.41 92.453 13488000 23593000 109310 24535000 21874000 34189000 21228000 20820000 19421000 19633000 19677000 12559000 22018000 1337600 25107000 20964000 33933000 21510000 21807000 19846000 19224000 18974000 2 2 2 2 2 2 2 2 2 2 2 13488000 23593000 109310 24535000 21874000 34189000 21228000 20820000 19421000 19633000 19677000 12559000 22018000 1337600 25107000 20964000 33933000 21510000 21807000 19846000 19224000 18974000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3109200000 2084800000 1024400000 12624 2838 11730 66908;66909;66910;66911 80889;80890 80890 2 LRNEYGPVLHMPTSK Oxidation (M) 1756.893 0.89303909 228 O43660;O43660-2 PLRG1 Pleiotropic regulator 1 yes no 0 0 1 1 By MS/MS By MS/MS 1 0 2 1 1 36.513 36.483 4 0.00061604 8555 20211116_3428_TMUAki_TMT10x_P_F1 76.151 62.95 790730 1181800 0 1282400 1395100 1234400 859520 1088100 1056600 910540 1174400 736230 1103100 71065 1300400 1324100 1257200 905960 1108400 1070500 896600 1129300 2 2 0 2 2 2 2 2 2 2 2 423140 610250 0 667380 1048900 921150 564140 551110 509780 439420 606480 393970 569640 40994 680600 993410 914440 595900 575660 524430 433770 582060 1 1 0 1 1 1 1 1 1 1 1 367590 571570 0 615000 346180 313270 295380 536990 546850 471120 567960 342260 533500 30071 619820 330650 342770 310060 532710 546070 462830 547240 1 1 0 1 1 1 1 1 1 1 1 67475000 41473000 26002000 12625 228 11731 66912;66913 80891;80892 80891 179 2 LRNEYGPVLHMPTSK Unmodified 1740.8981 0.89812447 228 O43660;O43660-2 PLRG1 Pleiotropic regulator 1 yes no 0 0 0 1 By MS/MS 2 0 1 1 45.109 44.816 4 0.042359 13540 20211116_3429_TMUAki_TMT10x_P_F2 42.338 24.537 2025300 2741100 235310 2984300 4184600 4198700 2929900 3222200 2589800 2194500 3683000 1887500 2558700 417460 3045500 3995100 4180500 3027000 3294600 2688300 2185600 3519100 1 1 1 1 1 1 1 1 1 1 1 2025300 2741100 235310 2984300 4184600 4198700 2929900 3222200 2589800 2194500 3683000 1887500 2558700 417460 3045500 3995100 4180500 3027000 3294600 2688300 2185600 3519100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 262850000 262850000 0 12626 228 11731 66914 80893 80893 1 LRNIELICQENEGENDPVLQR Unmodified 2538.2496 0.24964912 1824 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 1 By MS/MS By MS/MS 3.2 0.748 1 2 2 2 3 56.69 56.564 3 1.7492E-76 19780 20211116_3441_TMUAki_TMT10x_S_F3 273.94 257.44 7306100 12679000 68886 13793000 12286000 8653400 7179200 8205000 7988800 7035400 10158000 6803100 11835000 546840 13916000 11655000 9122500 7574200 8329900 8168800 6919400 9731800 5 5 3 5 5 5 5 5 5 5 5 2512000 4453000 2591.1 4505900 3594100 5388100 3119200 3248400 3241700 2936100 3449800 2338900 4155300 213760 4606200 3433600 5386600 3192600 3401400 3299900 2880400 3321500 2 2 1 2 2 2 2 2 2 2 2 4794100 8225900 66295 9287100 8691800 3265300 4060000 4956600 4747200 4099400 6708100 4464300 7679600 333080 9309300 8221600 3735900 4381700 4928500 4868900 4039000 6410300 3 3 2 3 3 3 3 3 3 3 3 4448200000 2000900000 2447400000 12627 1824 11732 66915;66916;66917;66918;66919 80894;80895;80896;80897;80898;80899 80897 6 LRPEDPVLK Unmodified 1065.6182 0.61824444 2287 Q8TEQ6 GEMIN5 Gem-associated protein 5 yes yes 0 0 0 1 By matching By MS/MS 4.75 0.829 2 1 1 1 3 39.741 39.878 3 0.00010953 9599 20211116_3444_TMUAki_TMT10x_S_F5 134.57 97.454 2465200 3937100 32685 4015400 2430000 2027800 2548400 2336400 2304300 2323200 3187300 2295600 3674100 233970 4061100 2334900 2195400 2571200 2359500 2386300 2269500 3047300 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2465200 3937100 32685 4015400 2430000 2027800 2548400 2336400 2304300 2323200 3187300 2295600 3674100 233970 4061100 2334900 2195400 2571200 2359500 2386300 2269500 3047300 3 3 2 3 3 3 3 3 3 3 3 324740000 136070000 188670000 12628 2287 11733 66920;66921;66922;66923 80900;80901;80902 80901 3 LRPFVDGTAGASDPPCVR Unmodified 1913.9418 0.9417802 1734 Q14807 KIF22 Kinesin-like protein KIF22 yes yes 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 46.408 46.733 3 3.8799E-17 14011 20211116_3435_TMUAki_TMT10x_P_F7 141.99 127.3 6249100 10047000 18957 11102000 10129000 11365000 7350900 9128700 9058400 8321300 9082400 5818100 9378600 517650 11255000 9638900 11512000 7654500 9370200 9141500 8160300 8760700 5 5 1 5 5 5 5 5 5 5 5 3969000 6189600 0 7024300 8042000 9407300 5693500 5895700 5651300 5136000 5642100 3695100 5778700 333620 7142600 7648600 9357700 5896700 6148800 5750800 5047400 5443000 3 3 0 3 3 3 3 3 3 3 3 2280100 3857100 18957 4077700 2087200 1957900 1657400 3233100 3407000 3185300 3440300 2123000 3600000 184030 4112700 1990300 2154000 1757800 3221400 3390700 3112900 3317700 2 2 1 2 2 2 2 2 2 2 2 981190000 550080000 431110000 12629 1734 11734 66924;66925;66926;66927 80903;80904;80905;80906;80907 80904 5 LRPGFMEDR Oxidation (M) 1135.5444 0.54442757 1915 Q5BKZ1 ZNF326 DBIRD complex subunit ZNF326 yes yes 0 0 1 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 31.603 31.639 3 0.067749 6946 20211116_3431_TMUAki_TMT10x_P_F4 43.185 21.657 3005600 4602900 2952.9 5304500 5864700 4850400 3456800 1733500 1809400 1958200 3279400 2798400 4297600 277640 5355100 5562100 4899200 3581300 1926500 1965000 1903200 3118000 3 3 2 3 3 3 3 3 3 3 3 2817200 4314400 1458.9 4918200 5705200 4766100 3310600 1679600 1753300 1872700 3084200 2623000 4028100 261030 4972400 5409300 4795400 3435100 1869300 1899100 1821000 2934000 2 2 1 2 2 2 2 2 2 2 2 188410 288490 1494 386340 159580 84264 146160 53836 56139 85474 195180 175440 269560 16609 382700 152760 103790 146170 57220 65984 82175 183970 1 1 1 1 1 1 1 1 1 1 1 202480000 193940000 8537600 12630 1915 11735 66928;66929;66930 80908 80908 2512 1 LRPGFMEDR Unmodified 1119.5495 0.54951295 1915 Q5BKZ1 ZNF326 DBIRD complex subunit ZNF326 yes yes 0 0 0 1 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 36.508 36.546 3 0.00039038 8274 20211116_3444_TMUAki_TMT10x_S_F5 113.46 92.558 2571100 3876600 61579 4469300 4861700 4566600 3221000 3060500 3068600 2930400 3629400 2394400 3619500 300800 4519000 4624000 4612300 3348200 3183800 3148300 2867300 3483800 4 4 3 4 4 4 4 4 4 4 4 2047900 2942800 51939 3403000 4351600 4206800 2747400 2491800 2490100 2405700 2918100 1907100 2747600 248610 3451100 4135200 4197400 2862700 2617400 2559700 2353100 2801800 3 3 2 3 3 3 3 3 3 3 3 523260 933830 9639.4 1066300 510100 359820 473600 568680 578470 524700 711290 487280 871860 52181 1067900 488780 414830 485550 566340 588610 514260 682050 1 1 1 1 1 1 1 1 1 1 1 114140000 67915000 46228000 12631 1915 11735 66931;66932;66933 80909;80910;80911;80912 80912 4 LRPIAVIKG Unmodified 965.63859 0.63858595 3285 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog yes yes 0 0 0 2 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 45.492 45.378 3 2.1461E-05 15287 20211116_3441_TMUAki_TMT10x_S_F3 111.39 99.544 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12632 3285 11736 66934;66935 80913;80914 80914 2 LRPLFEACGEVVQIRPIFSNR Unmodified 2500.3373 0.33728233 1753 Q15020;Q15020-4 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 0 0 0 2 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 68.557 68.541 4 8.1359E-76 22185 20211116_3433_TMUAki_TMT10x_P_F5 267.55 228.22 25682000 40238000 268260 37414000 30127000 39585000 30222000 29054000 25946000 28617000 31813000 23912000 37536000 2108500 38400000 28884000 39956000 30518000 30058000 26791000 27967000 30508000 7 7 3 7 7 7 7 7 7 7 7 13534000 19686000 107050 18725000 14204000 26478000 16250000 14456000 12954000 14649000 16249000 12600000 18366000 958080 19286000 13659000 26226000 16274000 15310000 13440000 14299000 15573000 3 3 1 3 3 3 3 3 3 3 3 12148000 20552000 161200 18689000 15923000 13107000 13972000 14598000 12991000 13968000 15565000 11312000 19170000 1150500 19114000 15224000 13730000 14244000 14748000 13351000 13668000 14935000 4 4 2 4 4 4 4 4 4 4 4 6258900000 3313200000 2945700000 12633 1753 11737 66936;66937;66938;66939;66940;66941 80915;80916;80917;80918;80919;80920 80916 6 LRPLYDIPYMFEAR Oxidation (M) 1798.9076 0.90762652 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 1 1 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 66.449 66.3 3 3.0683E-06 22618 20211116_3439_TMUAki_TMT10x_S_F1 109.99 94.604 9186100 14732000 114430 14702000 9864000 13624000 10323000 9952600 9893300 11056000 11600000 8553800 13747000 847180 14984000 9474500 13864000 10434000 10337000 10144000 10752000 11137000 3 3 2 3 3 3 3 3 3 3 3 3430800 5196600 52138 5270400 3552700 6992000 3792600 3799000 3825200 4354000 4163600 3194800 4849200 334730 5397200 3415700 6945100 3835500 4040300 3902000 4229500 4006000 1 1 1 1 1 1 1 1 1 1 1 5755300 9535500 62295 9431600 6311300 6632400 6530600 6153600 6068200 6702000 7436000 5359000 8897300 512440 9587300 6058800 6918500 6598500 6297100 6242100 6522900 7130900 2 2 1 2 2 2 2 2 2 2 2 1577500000 685510000 891980000 12634 2048 11738 66942;66943;66944 80921;80922 80922 2560 2 LRPLYDIPYMFEAR Unmodified 1782.9127 0.9127119 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 1 By MS/MS By matching 2.5 0.5 1 1 1 1 76.55 76.444 3 3.0082E-09 26310 20211116_3429_TMUAki_TMT10x_P_F2 128.64 114.68 3278700 4862600 107540 5028300 3077600 5180900 3881200 2172500 1862500 2458500 3347000 3053600 4537900 369230 5120300 2977700 5201000 3832400 2369300 2035800 2389300 3182700 1 1 1 1 1 1 1 1 1 1 1 3278700 4862600 107540 5028300 3077600 5180900 3881200 2172500 1862500 2458500 3347000 3053600 4537900 369230 5120300 2977700 5201000 3832400 2369300 2035800 2389300 3182700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 959300000 700700000 258600000 12635 2048 11738 66945;66946 80923 80923 1 LRPSGDDVELIGEEEDVSVYDIADHPDFR Unmodified 3286.5266 0.52659507 2748 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 71.874 71.81 4 1.2196E-33 22946 20211116_3428_TMUAki_TMT10x_P_F1 170.53 163.65 4366000 7141100 99415 6373100 4488300 7762500 5316100 4198300 4608300 4658700 5097700 4065800 6660600 447890 6576700 4329900 7742100 5327200 4462200 4736500 4531000 4902400 3 3 2 3 3 3 3 3 3 3 3 3174800 4905800 99415 4377800 2954600 6618600 4023300 3134900 3355900 3540800 3475100 2956800 4575600 352780 4536800 2865900 6526100 4004500 3375300 3447500 3441400 3348600 2 2 2 2 2 2 2 2 2 2 2 1191200 2235400 0 1995400 1533700 1143900 1292900 1063400 1252400 1117900 1622500 1109000 2084900 95115 2039800 1464000 1216000 1322700 1086900 1289000 1089500 1553700 1 1 0 1 1 1 1 1 1 1 1 3106000000 1706200000 1399800000 12636 2748 11739 66947;66948 80924;80925;80926 80924 3 LRPVNPNPLATK Unmodified 1318.7721 0.77211932 1149 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 42.535 42.654 3 7.2637E-16 14187 20211116_3441_TMUAki_TMT10x_S_F3 171.62 145.55 8576100 14494000 108590 15414000 14656000 14809000 10247000 11255000 12227000 9682700 12606000 7985300 13528000 814800 15651000 13943000 15044000 10685000 11575000 12366000 9521400 12149000 5 5 2 5 5 5 5 5 5 5 5 4634100 7278100 26875 7772100 10781000 11129000 6516800 5798900 6657800 4943100 6522300 4314400 6793100 417300 7944100 10226000 11011000 6837600 6139300 6762200 4862900 6296100 3 3 1 3 3 3 3 3 3 3 3 3941900 7216000 81715 7642400 3875400 3679800 3729700 5455900 5569300 4739600 6084000 3670900 6734900 397500 7707100 3716900 4033100 3847800 5436100 5603600 4658500 5853000 2 2 1 2 2 2 2 2 2 2 2 419970000 323910000 96062000 12637 1149 11740 66949;66950;66951;66952 80927;80928;80929;80930;80931;80932 80930 6 LRPVNQNK Unmodified 967.55631 0.55631289 1148 P51114;P51114-2;P51114-3 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 28.8 28.749 3 0.00023023 5505 20211116_3428_TMUAki_TMT10x_P_F1 148.04 118.63 982970 1617900 6587.6 1283500 1058500 1420100 982170 596670 811810 728970 1026600 915280 1508400 87271 1335000 1013300 1419800 994970 652170 840950 706500 983630 3 3 2 3 3 3 3 3 3 3 3 774000 1280700 5408.2 1007400 850690 1238900 770710 470820 645070 574040 801600 720700 1194000 68863 1050500 813900 1230500 782060 520550 667300 556390 768430 2 2 1 2 2 2 2 2 2 2 2 208980 337270 1179.4 276050 207800 181280 211460 125850 166740 154930 224950 194590 314480 18408 284530 199410 189280 212920 131630 173650 150110 215200 1 1 1 1 1 1 1 1 1 1 1 49652000 38350000 11302000 12638 1148 11741 66953;66954;66955 80933;80934;80935 80933 3 LRQEFAQHANAFHQWIQETR Unmodified 2509.2363 0.23632274 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS By MS/MS 3 0 4 2 2 54.235 53.957 4;5 1.0842E-06 18794 20211116_3441_TMUAki_TMT10x_S_F3 93.255 77.313 5001700 7443600 137470 8061700 6594100 7628700 5270900 5144900 4844400 4631500 5885000 4658100 6948000 565100 8174100 6297800 7742500 5402500 5341000 4983900 4544600 5644800 3 3 3 3 3 3 3 3 3 3 3 4210700 6065500 124730 6645900 5725800 7018000 4482400 4292300 4016900 3709600 4822900 3921600 5662000 486570 6744500 5466400 7065200 4597300 4484200 4135400 3647000 4627600 2 2 2 2 2 2 2 2 2 2 2 790980 1378100 12740 1415700 868380 610750 788450 852620 827560 921960 1062000 736570 1286000 78534 1429600 831400 677280 805150 856750 848510 897570 1017300 1 1 1 1 1 1 1 1 1 1 1 1024900000 472940000 551970000 12639 1663 11742 66956;66957;66958;66959 80936;80937;80938 80938 3 LRQENMELAER Oxidation (M) 1403.6827 0.68271197 981 P40222 TXLNA Alpha-taxilin yes yes 0 0 1 1 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 29.615 29.45 3 0.0039197 7345 20211116_3429_TMUAki_TMT10x_P_F2 69.641 53.761 401690 630850 3659.6 704560 580400 532310 449490 274390 362590 572580 509500 374000 588920 33759 710980 553090 547110 460090 300920 377890 546930 486950 2 2 1 2 2 2 2 2 2 2 2 180390 269020 3659.6 329700 360730 316360 196430 124150 167520 377640 219490 167990 251250 20892 331870 341980 318790 206940 143510 173530 358380 210120 1 1 1 1 1 1 1 1 1 1 1 221310 361830 0 374850 219670 215950 253060 150240 195080 194940 290020 206010 337670 12868 379120 211110 228320 253150 157410 204360 188550 276830 1 1 0 1 1 1 1 1 1 1 1 33682000 20258000 13424000 12640 981 11743 66960;66961;66962 80939;80940 80939 1260 2 LRQENMELAER Unmodified 1387.6878 0.68779734 981 P40222 TXLNA Alpha-taxilin yes yes 0 0 0 1 By MS/MS 3 0 1 1 33.765 33.525 3 0.0042673 10445 20211116_3441_TMUAki_TMT10x_S_F3 66.485 44.936 268780 465950 7498.7 469100 264880 210630 312080 261720 282270 253400 380050 250320 434800 29218 474470 255620 231670 313160 263280 291940 247820 363590 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 268780 465950 7498.7 469100 264880 210630 312080 261720 282270 253400 380050 250320 434800 29218 474470 255620 231670 313160 263280 291940 247820 363590 1 1 1 1 1 1 1 1 1 1 1 12956000 0 12956000 12641 981 11743 66963 80941 80941 1 LRQPFFQK Unmodified 1062.5974 0.59744942 1478 Q01105;Q01105-2;Q01105-3;Q01105-4;P0DME0 SET;SETSIP Protein SET;Protein SETSIP yes no 0 0 0 1 By MS/MS By MS/MS 3.5 1.12 2 2 2 2 4 4 45.161 45.154 3 0.00013348 12389 20211116_3431_TMUAki_TMT10x_P_F4 189.53 124.28 23834000 39898000 243460 53452000 68793000 44443000 26251000 33597000 37655000 26675000 39344000 22193000 37279000 2832600 53438000 64908000 45588000 29205000 34499000 37868000 26338000 37901000 8 8 8 8 8 8 8 8 8 8 8 13206000 21702000 139140 29022000 59229000 39187000 20232000 18308000 20892000 14818000 21534000 12297000 20278000 1869100 29242000 55820000 38825000 22582000 19564000 21248000 14616000 20753000 4 4 4 4 4 4 4 4 4 4 4 10627000 18196000 104320 24430000 9564000 5256000 6019600 15289000 16763000 11858000 17810000 9895900 17002000 963410 24195000 9087600 6762600 6623900 14936000 16620000 11722000 17148000 4 4 4 4 4 4 4 4 4 4 4 4366400000 2716900000 1649500000 12642 1478 11744 66964;66965;66966;66967;66968;66969;66970;66971 80942;80943;80944;80945;80946;80947;80948;80949 80943 8 LRQQEIER Unmodified 1070.5833 0.58325592 1595 Q13123 IK Protein Red yes yes 0 0 0 1 By MS/MS 3 0 1 1 27.821 27.538 3 0.00085668 8125 20211116_3441_TMUAki_TMT10x_S_F3 119.62 79.286 99663 187650 3808.4 169930 109020 107770 131670 92241 92037 89531 125440 92825 175030 11943 173680 105330 113270 131150 94487 96552 87552 119980 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 99663 187650 3808.4 169930 109020 107770 131670 92241 92037 89531 125440 92825 175030 11943 173680 105330 113270 131150 94487 96552 87552 119980 1 1 1 1 1 1 1 1 1 1 1 4355800 0 4355800 12643 1595 11745 66972 80950 80950 1 LRSDIAVPIPK Unmodified 1207.7289 0.72885752 1547 Q08257;Q08257-3 CRYZ Quinone oxidoreductase yes no 0 0 0 1 By MS/MS 4.5 3.5 1 1 2 51.387 51.431 3 0.0022106 14575 20211116_3428_TMUAki_TMT10x_P_F1 69.864 37.801 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12644 1547 11746 66973;66974 80951;80952 80951 2 LRSLMPK Oxidation (M) 859.49496 0.49495818 3387 yes no 0 0 1 1 By MS/MS By MS/MS 2.2 0.748 1 2 2 2 3 34.135 33.959 3 0.032215 9315 20211116_3429_TMUAki_TMT10x_P_F2 66.682 22.235 + 6930100 11211000 80500 7294400 12819000 5717600 10799000 3052900 6837800 6417800 8594700 6452900 10447000 694600 7363700 12243000 5862100 10937000 3242400 7192000 6129300 8236600 6 6 3 5 6 5 6 5 6 6 6 3028500 4650600 80500 5106000 4881000 4786700 3859300 2152400 1844200 2242300 3723100 2820400 4341200 352050 5172000 4659300 4836800 3905700 2324000 2031000 2186200 3533400 3 3 3 3 3 3 3 3 3 3 3 3901600 6560500 0 2188400 7938100 930980 6939700 900550 4993600 4175500 4871600 3632500 6105300 342550 2191600 7583900 1025300 7031200 918370 5161000 3943100 4703200 3 3 0 2 3 2 3 2 3 3 3 12538000000 443890000 12095000000 12645 3387 11747 66975;66976;66977;66978;66979 80953;80954;80955 80953 3313 3 LRSLMPK Unmodified 843.50004 0.50004356 3387 yes no 0 0 0 1 By MS/MS By MS/MS 3.73 1.71 1 1 3 4 1 1 2 9 27.644 27.717 3 0.014972 11563 20211116_3441_TMUAki_TMT10x_S_F3 73.665 10.1 + 8493200 13362000 230990 16491000 7705300 6435500 9634100 6018900 5328700 6419600 10374000 7909600 12480000 894950 16452000 7449800 7167000 9538100 6152600 5788500 6253200 9851500 11 11 9 11 11 11 11 11 11 11 11 270360 421050 51943 478240 492660 705900 555160 543420 436310 505370 542120 252120 393100 73937 487250 477100 701430 556170 559570 452830 495140 519690 2 2 2 2 2 2 2 2 2 2 2 8222800 12941000 179040 16013000 7212600 5729600 9078900 5475500 4892400 5914200 9832100 7657500 12087000 821010 15965000 6972700 6465500 8981900 5593000 5335600 5758000 9331800 9 9 7 9 9 9 9 9 9 9 9 10335000000 22358000 10312000000 12646 3387 11747 66980;66981;66982;66983;66984;66985;66986;66987;66988;66989;66990 80956;80957;80958;80959;80960;80961;80962;80963;80964;80965;80966 80959 11 LRVCEVCSAYLGLHDNDRR Unmodified 2332.1165 0.11646688 2486;2898 Q9Y383;Q96HJ9-2;Q9Y383-3;Q9Y383-2;Q9NQ29;Q9NQ29-2;Q9NQ29-3 LUC7L2;LUC7L Putative RNA-binding protein Luc7-like 2;Putative RNA-binding protein Luc7-like 1 no no 0 0 0 2 By MS/MS By MS/MS 6 2.88 1 1 1 4 4 3 42.892 43.019 4;5 1.1301E-23 10761 20211116_3447_TMUAki_TMT10x_S_F8 166.3 150.88 9775200 15160000 120490 15814000 15005000 15322000 10668000 10558000 10976000 10202000 12710000 9102000 14148000 932730 16080000 14282000 15532000 11057000 10965000 11214000 9978900 12207000 9 9 7 9 9 9 9 9 9 9 9 6165000 9223400 81305 9400700 11422000 12074000 7068800 6076500 6569900 5985600 7760400 5740700 8607000 639620 9617700 10846000 12000000 7382400 6478100 6747800 5849600 7449300 4 4 3 4 4 4 4 4 4 4 4 3610200 5936600 39190 6413600 3583200 3248500 3599400 4481700 4405800 4216900 4949900 3361400 5541200 293110 6461900 3435700 3532300 3675100 4486600 4466200 4129300 4758100 5 5 4 5 5 5 5 5 5 5 5 2868000000 2132500000 735470000 12647 2486;2898 11748 66991;66992;66993;66994;66995;66996;66997 80967;80968;80969;80970;80971;80972;80973;80974;80975 80973 9 LRVDPVNFK Unmodified 1086.6186 0.61857879 36 CON__P01966;P69905 HBA1 Hemoglobin subunit alpha yes no 0 0 0 1 By MS/MS By MS/MS 4.5 3.04 2 2 2 2 4 4 49.019 49.017 3 1.9967E-05 15188 20211116_3429_TMUAki_TMT10x_P_F2 152.37 129.05 + 30718000 45653000 490770 63201000 75182000 69482000 43549000 76601000 91189000 73744000 64054000 28604000 42664000 3555200 63330000 71318000 70556000 47303000 77438000 89722000 72140000 62631000 7 7 6 7 7 7 7 7 7 7 7 14851000 21596000 372370 28860000 63168000 58277000 28946000 34127000 43285000 33479000 30247000 13830000 20178000 2183400 29369000 59726000 57011000 31594000 35898000 42945000 32724000 29582000 4 4 3 4 4 4 4 4 4 4 4 15866000 24057000 118400 34341000 12015000 11205000 14603000 42474000 47904000 40265000 33807000 14774000 22486000 1371800 33961000 11593000 13545000 15708000 41540000 46777000 39415000 33049000 3 3 3 3 3 3 3 3 3 3 3 10558000000 7526900000 3031300000 12648 36 11749 66998;66999;67000;67001;67002;67003;67004;67005 80976;80977;80978;80979;80980;80981;80982;80983 80977 8 LRVDYSGGFEPFSVLR Unmodified 1840.9472 0.94718315 1130 P49959;P49959-2;P49959-3 MRE11A Double-strand break repair protein MRE11A yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 72.8 72.631 3 1.5228E-80 23494 20211116_3440_TMUAki_TMT10x_S_F2 326.05 279.09 9973300 15128000 102140 14551000 10492000 14375000 10991000 9378400 10248000 10020000 11178000 9286400 14114000 861990 14882000 10075000 14542000 11100000 9806600 10492000 9760000 10754000 3 3 2 3 3 3 3 3 3 3 3 5460700 7617300 0 7769400 4600800 9367600 5972900 4498400 5948100 5409000 5764500 5083900 7108300 373370 7939200 4441500 9335100 5986000 4846700 6045700 5245200 5566500 1 1 0 1 1 1 1 1 1 1 1 4512600 7510900 102140 6781200 5891300 5006900 5018300 4879900 4300400 4611400 5413300 4202500 7005700 488630 6942900 5633100 5207300 5113700 4959900 4445800 4514800 5187500 2 2 2 2 2 2 2 2 2 2 2 2887500000 1475800000 1411700000 12649 1130 11750 67006;67007 80984;80985;80986 80985 3 LRVEFPR Unmodified 915.52904 0.5290355 1543;1611 Q07955;Q07955-3;Q07955-2;Q13242 SRSF1;SRSF9 Serine/arginine-rich splicing factor 1;Serine/arginine-rich splicing factor 9 no no 0 0 0 1 By MS/MS By MS/MS 3.4 2.58 2 1 1 1 3 2 40.677 40.679 3 0.00098883 10325 20211116_3428_TMUAki_TMT10x_P_F1 132.57 58.951 13904000 20737000 0 22057000 19689000 23090000 10705000 16851000 12340000 17246000 14527000 12945000 19355000 1161100 22424000 18648000 23319000 11378000 17460000 12560000 16827000 13946000 5 5 0 5 5 5 5 5 5 5 5 8390400 12183000 0 13232000 15753000 16459000 8022800 9974400 9595600 9369500 10944000 7811900 11372000 747130 13473000 14907000 16423000 8590800 10450000 9740900 9175700 10515000 4 4 0 4 4 4 4 4 4 4 4 5513100 8554500 0 8825500 3935600 6630500 2681700 6876500 2744100 7876100 3583700 5133100 7983300 413940 8951500 3740700 6895700 2787700 7009100 2818700 7651000 3431100 1 1 0 1 1 1 1 1 1 1 1 2535900000 1972700000 563200000 12650 1543;1611 11751 67008;67009;67010;67011;67012 80987;80988;80989;80990;80991;80992 80988 6 LRVELAEK Unmodified 956.56548 0.56548059 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 1 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 40.589 40.753 3 0.00063142 10023 20211116_3445_TMUAki_TMT10x_S_F6 126.49 18.582 1702500 2780100 20682 2841000 1880500 1666800 1911900 1832800 1776700 1765200 2178200 1585300 2594300 162910 2876400 1805100 1774100 1933500 1853100 1827700 1726800 2088800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1702500 2780100 20682 2841000 1880500 1666800 1911900 1832800 1776700 1765200 2178200 1585300 2594300 162910 2876400 1805100 1774100 1933500 1853100 1827700 1726800 2088800 2 2 2 2 2 2 2 2 2 2 2 116940000 0 116940000 12651 935 11752 67013;67014;67015 80993;80994;80995;80996 80995 4 LRYPINEEALEK Unmodified 1473.7827 0.78274359 728 P19174-2;P19174 PLCG1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 yes no 0 0 0 1 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 49.83 49.955 3 7.8483E-06 13458 20211116_3434_TMUAki_TMT10x_P_F6 104.49 84.028 11178000 17452000 261490 20936000 17826000 17485000 12621000 13457000 13719000 12171000 14754000 10409000 16298000 1255800 21060000 16977000 17935000 13108000 13847000 13945000 11940000 14201000 3 3 2 3 3 3 3 3 3 3 3 7058300 10863000 261490 13628000 14555000 14713000 9519600 8899100 8890000 8018100 9614000 6573900 10147000 933870 13724000 13845000 14791000 9899900 9315000 9097300 7867200 9251900 2 2 2 2 2 2 2 2 2 2 2 4119400 6588900 0 7307300 3271500 2772300 3101000 4558300 4828800 4153400 5140000 3835500 6150800 321900 7336100 3132000 3144100 3207800 4532300 4847900 4073100 4948700 1 1 0 1 1 1 1 1 1 1 1 909450000 360290000 549160000 12652 728 11753 67016;67017;67018 80997;80998;80999;81000 80998 4 LSAAVTEAFVR Unmodified 1162.6346 0.63462279 820 P26640;P26640-2 VARS Valine--tRNA ligase yes no 0 0 0 0 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 61.671 61.907 2 4.5283E-08 18412 20211116_3447_TMUAki_TMT10x_S_F8 148.32 108.78 62403000 103850000 667670 96333000 76048000 108510000 69858000 86219000 81097000 82670000 86366000 58108000 96878000 5987000 98989000 72803000 109300000 71531000 88680000 82197000 80886000 83151000 6 6 6 6 6 6 6 6 6 6 6 32530000 52205000 430440 49554000 44859000 75292000 42062000 45736000 43381000 43939000 43949000 30292000 48703000 3270800 51125000 42969000 74451000 42852000 47939000 44095000 42987000 42379000 3 3 3 3 3 3 3 3 3 3 3 29872000 51649000 237230 46779000 31189000 33222000 27796000 40483000 37716000 38732000 42417000 27816000 48175000 2716100 47864000 29834000 34844000 28679000 40741000 38102000 37900000 40772000 3 3 3 3 3 3 3 3 3 3 3 5064200000 2783800000 2280400000 12653 820 11754 67019;67020;67021;67022;67023;67024 81001;81002;81003;81004;81005;81006 81006 6 LSAEKVEIATLTR Unmodified 1429.814 0.81404372 809 P25789;P25789-2 PSMA4 Proteasome subunit alpha type-4 yes no 0 0 0 1 By MS/MS By MS/MS 6.8 0.748 2 2 1 2 3 54.528 54.933 3 2.6938E-06 17839 20211116_3446_TMUAki_TMT10x_S_F7 103.16 80.962 12964000 21812000 160490 18784000 21893000 28386000 16084000 18886000 18811000 17344000 18010000 12072000 20341000 1349500 19521000 20855000 28112000 16703000 19636000 18989000 17003000 17398000 3 3 3 3 3 3 3 3 3 3 3 10373000 17247000 126120 14839000 19561000 25603000 13787000 14417000 14565000 13376000 14217000 9659500 16084000 1106200 15469000 18619000 25167000 14311000 15192000 14771000 13107000 13726000 2 2 2 2 2 2 2 2 2 2 2 2591000 4564800 34374 3945900 2331300 2782700 2297000 4469000 4245800 3967900 3792400 2412700 4257100 243210 4051800 2236600 2944500 2392100 4443600 4218000 3895900 3672400 1 1 1 1 1 1 1 1 1 1 1 892870000 567360000 325510000 12654 809 11755 67025;67026;67027;67028;67029 81007;81008;81009;81010;81011;81012 81011 6 LSAFRPAPR Unmodified 1013.577 0.57704833 902 P32322;P32322-2;P32322-3 PYCR1 Pyrroline-5-carboxylate reductase 1, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 34.296 34.348 3 0.00060218 8192 20211116_3431_TMUAki_TMT10x_P_F4 102.01 66.067 3306800 5466100 0 5279000 5858200 6110700 3763500 3836700 3798700 3380300 4345200 3078400 5099800 243190 5411100 5560100 6122800 3928100 4002000 3882400 3320200 4174700 3 3 0 3 3 3 3 3 3 3 3 2509900 4124300 0 3953900 4933600 5512800 3104700 2826900 2820000 2524700 3184400 2336600 3847800 196830 4069000 4681700 5459600 3236100 3000700 2894200 2478200 3060600 2 2 0 2 2 2 2 2 2 2 2 796880 1341800 0 1325100 924580 597850 658760 1009800 978760 855610 1160800 741800 1252000 46360 1342200 878450 663170 692010 1001200 988180 841980 1114200 1 1 0 1 1 1 1 1 1 1 1 176600000 142460000 34146000 12655 902 11756 67030;67031;67032 81013;81014;81015 81013 3 LSAIYGGTYMLNKPIEEIIVQNGK Oxidation (M) 2666.3989 0.39893912 1133 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 1 1 By MS/MS By MS/MS 2.8 1.91 4 7 6 1 2 8 12 55.27 55.211 3;4 1.6877E-22 25512 20211116_3440_TMUAki_TMT10x_S_F2 151.82 143.82 119750000 207540000 564160 157040000 143630000 216620000 152660000 163690000 170040000 170230000 161370000 111490000 193460000 9822600 164670000 137920000 215810000 154910000 169290000 171920000 165980000 155940000 28 28 20 28 28 28 28 28 28 28 28 51144000 85725000 220870 64921000 45041000 114700000 55775000 68985000 69511000 71950000 66577000 47620000 79913000 4156700 68444000 43457000 112750000 56439000 72535000 70010000 70148000 64315000 10 10 7 10 10 10 10 10 10 10 10 68604000 121810000 343290 92122000 98588000 101920000 96883000 94701000 100530000 98275000 94798000 63874000 113550000 5665900 96223000 94459000 103060000 98475000 96757000 101910000 95833000 91625000 18 18 13 18 18 18 18 18 18 18 18 27910000000 14304000000 13606000000 12656 1133 11757 67033;67034;67035;67036;67037;67038;67039;67040;67041;67042;67043;67044;67045;67046;67047;67048;67049;67050;67051;67052 81016;81017;81018;81019;81020;81021;81022;81023;81024;81025;81026;81027;81028;81029;81030;81031;81032;81033;81034;81035;81036;81037;81038;81039;81040;81041;81042;81043 81029 1494 28 LSAIYGGTYMLNKPIEEIIVQNGK Unmodified 2650.404 0.4040245 1133 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 78.751 78.698 3;4 5.6405E-60 28684 20211116_3441_TMUAki_TMT10x_S_F3 227.8 219.2 66184000 104500000 375250 103240000 66675000 69676000 75078000 28551000 26053000 38260000 63207000 61623000 97505000 5436100 104910000 64138000 72128000 74198000 31395000 29968000 36967000 59824000 7 7 3 7 7 7 7 7 7 7 7 31828000 48543000 0 47284000 27656000 39000000 32630000 12653000 11661000 17009000 27975000 29632000 45291000 2242600 48203000 26621000 39650000 32189000 14325000 13360000 16432000 26481000 3 3 0 3 3 3 3 3 3 3 3 34356000 55957000 375250 55954000 39019000 30676000 42448000 15898000 14392000 21252000 35232000 31991000 52214000 3193500 56705000 37518000 32478000 42009000 17070000 16608000 20535000 33342000 4 4 3 4 4 4 4 4 4 4 4 6465900000 3334800000 3131100000 12657 1133 11757 67053;67054;67055;67056 81044;81045;81046;81047;81048;81049;81050 81049 7 LSAIYGGTYMLNKPVDDIIMENGK 2 Oxidation (M) 2673.303 0.30298982 884 P31150 GDI1 Rab GDP dissociation inhibitor alpha yes yes 0 0 2 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 74.143 74.177 4 4.1699E-09 24064 20211116_3436_TMUAki_TMT10x_P_F8 101.71 82.497 12094000 22495000 127620 17163000 14584000 29856000 17267000 24717000 29515000 26857000 20062000 11261000 20971000 1100800 18075000 14056000 29517000 17753000 25454000 29155000 26142000 19646000 4 4 3 4 4 4 4 4 4 4 4 5836700 10088000 41314 7336200 5510400 16364000 6556300 11294000 12371000 12049000 8903100 5434800 9402700 517840 7813500 5312400 16000000 6775600 11762000 12208000 11737000 8695900 2 2 2 2 2 2 2 2 2 2 2 6257600 12408000 86304 9826700 9074000 13492000 10710000 13423000 17144000 14808000 11159000 5826600 11568000 582940 10262000 8743300 13517000 10978000 13692000 16947000 14405000 10950000 2 2 1 2 2 2 2 2 2 2 2 3730800000 2856300000 874500000 12658 884 11758 67057;67058;67059 81051;81052;81053;81054 81052 1063;1064 4 LSAIYGGTYMLNKPVDDIIMENGK Unmodified 2641.3132 0.31316058 884 P31150 GDI1 Rab GDP dissociation inhibitor alpha yes yes 0 0 0 1 By MS/MS 8 0 1 1 78.099 78.048 4 0.0015739 25016 20211116_3447_TMUAki_TMT10x_S_F8 60.278 49.588 5876000 9089200 74993 8164900 6148800 5175500 6559900 4071200 4109200 4282400 5920000 5471700 8477700 560870 8350100 5910600 5432000 6556700 4201400 4351900 4173700 5654800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5876000 9089200 74993 8164900 6148800 5175500 6559900 4071200 4109200 4282400 5920000 5471700 8477700 560870 8350100 5910600 5432000 6556700 4201400 4351900 4173700 5654800 1 1 1 1 1 1 1 1 1 1 1 685060000 0 685060000 12659 884 11758 67060 81055 81055 1 LSAKPAPPKPEPK Unmodified 1358.7922 0.79218606 505;1823 P05204;Q15651;Q15651-2 HMGN2;HMGN3 Non-histone chromosomal protein HMG-17;High mobility group nucleosome-binding domain-containing protein 3 no no 0 0 0 2 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 36.289 36.192 4 0.00023753 9929 20211116_3429_TMUAki_TMT10x_P_F2 89.911 57.287 31777000 49499000 477490 46063000 38567000 53428000 36798000 22424000 27797000 29161000 35625000 29590000 46175000 3071000 47344000 36958000 53277000 37139000 24565000 28950000 28202000 34124000 6 6 5 6 6 6 6 6 6 6 6 28998000 45083000 435900 41826000 36021000 50933000 33237000 20134000 25166000 26580000 32273000 27002000 42055000 2805100 43035000 34488000 50633000 33609000 22218000 26208000 25694000 30912000 5 5 4 5 5 5 5 5 5 5 5 2779600 4416700 41584 4237000 2546100 2495000 3560700 2290200 2630400 2581300 3352700 2588400 4120600 265930 4309100 2469300 2644600 3530000 2347600 2742300 2509000 3211800 1 1 1 1 1 1 1 1 1 1 1 2817300000 2549700000 267650000 12660 505;1823 11759 67061;67062;67063 81056;81057;81058;81059;81060;81061 81059 6 LSAKPAPPKPEPR Unmodified 1386.7983 0.79833407 94 O00479 HMGN4 High mobility group nucleosome-binding domain-containing protein 4 yes yes 0 0 0 2 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 33.488 33.417 4 4.7391E-05 8827 20211116_3429_TMUAki_TMT10x_P_F2 100.08 88.469 3767300 6358000 160930 5662100 6857900 7680200 5716900 5503500 5770300 4655800 6650600 3508900 5930100 505600 5855600 6556800 7650600 5860200 5680100 5899200 4582000 6388400 4 4 4 4 4 4 4 4 4 4 4 3071800 5030300 139100 4609200 6061500 6953200 4764200 4528100 4778700 3764000 5565600 2861100 4692200 426180 4766900 5787800 6884400 4900800 4703400 4888800 3707600 5344500 3 3 3 3 3 3 3 3 3 3 3 695520 1327800 21835 1052900 796480 726980 952660 975400 991590 891870 1085100 647760 1237900 79427 1088700 768950 766280 959370 976680 1010400 874490 1043800 1 1 1 1 1 1 1 1 1 1 1 268460000 229980000 38479000 12661 94 11760 67064;67065;67066 81062;81063;81064 81062 3 LSAKPPAK Unmodified 810.49634 0.49633839 501 P05114 HMGN1 Non-histone chromosomal protein HMG-14 yes yes 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 33.392 33.281 3 0.006754 8795 20211116_3429_TMUAki_TMT10x_P_F2 73.985 34.967 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12662 501 11761 67067;67068 81065;81066 81066 2 LSALALLSLLPSDNSVIQDK Unmodified 2096.1729 0.17288557 3130 Q9UI26;Q9UI26-2 IPO11 Importin-11 yes no 0 0 0 0 By MS/MS By matching 2.5 0.5 1 1 1 1 82.517 82.502 3 5.2611E-13 28774 20211116_3429_TMUAki_TMT10x_P_F2 130.11 118.13 1298600 1941400 14931 2175700 1359800 2025000 1345200 1157700 1177700 1245700 1608500 1209300 1812400 122440 2200700 1304400 2052700 1360100 1223500 1220800 1212900 1538400 2 2 2 2 2 2 2 2 2 2 2 1298600 1941400 14931 2175700 1359800 2025000 1345200 1157700 1177700 1245700 1608500 1209300 1812400 122440 2200700 1304400 2052700 1360100 1223500 1220800 1212900 1538400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 214890000 191900000 22991000 12663 3130 11762 67069;67070 81067;81068 81067 2 LSAQAQVAEDILDKYR Unmodified 1818.9476 0.94757708 1744 Q14C86;Q14C86-6;Q14C86-5;Q14C86-4;Q14C86-2;Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 yes no 0 0 0 1 By MS/MS 7 0 1 1 72.775 72.947 3 3.0559E-05 25297 20211116_3446_TMUAki_TMT10x_S_F7 91.414 68.612 6694200 11974000 75306 9474700 10141000 10134000 9223300 10968000 10178000 11086000 10900000 6233500 11163000 673460 9852100 9705500 10302000 9433200 11113000 10339000 10822000 10493000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6694200 11974000 75306 9474700 10141000 10134000 9223300 10968000 10178000 11086000 10900000 6233500 11163000 673460 9852100 9705500 10302000 9433200 11113000 10339000 10822000 10493000 2 2 2 2 2 2 2 2 2 2 2 554390000 0 554390000 12664 1744 11763 67071 81069;81070 81069 2 LSAVEAIANAISVVSSNGPGNR Unmodified 2125.1127 0.11274493 402 O95071;O95071-2 UBR5 E3 ubiquitin-protein ligase UBR5 yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 81.785 81.792 3 5.3558E-24 26851 20211116_3445_TMUAki_TMT10x_S_F6 148.69 132.55 2012300 2975800 2057.6 2890300 2095800 3220400 2349800 2006400 2022600 2138100 2414300 1873600 2776400 160090 2959500 2015400 3233100 2360000 2105200 2085900 2082700 2316800 2 2 1 2 2 2 2 2 2 2 2 1206000 1719700 2057.6 1748400 1186100 2272200 1392200 1192100 1220500 1231500 1496200 1123000 1604700 101630 1789500 1142600 2258200 1396100 1267700 1259000 1201200 1434800 1 1 1 1 1 1 1 1 1 1 1 806230 1256100 0 1141900 909640 948200 957550 814400 802130 906520 918090 750600 1171700 58461 1170100 872770 974900 963970 837530 826940 881560 882060 1 1 0 1 1 1 1 1 1 1 1 937500000 186850000 750650000 12665 402 11764 67072;67073;67074 81071;81072;81073 81073 3 LSCFAQTVSPAEK Unmodified 1436.697 0.69696505 1859 Q16658 FSCN1 Fascin yes yes 0 0 0 0 By MS/MS By MS/MS 7.14 0.639 1 4 2 4 3 55.755 56.187 2;3 2.9759E-25 17769 20211116_3435_TMUAki_TMT10x_P_F7 227.48 163.19 66631000 100780000 1419900 118130000 92237000 94290000 67880000 63835000 66824000 63683000 82245000 62049000 94106000 6943900 118930000 87898000 96842000 70094000 66436000 68575000 62202000 78862000 9 9 6 9 9 9 9 9 9 9 9 29575000 44084000 945170 52942000 61971000 65322000 38790000 27989000 29469000 28443000 36048000 27544000 41168000 3720200 53569000 58891000 64943000 40270000 30355000 30621000 27760000 34571000 4 4 3 4 4 4 4 4 4 4 4 37056000 56699000 474770 65190000 30266000 28967000 29090000 35846000 37354000 35239000 46197000 34505000 52938000 3223700 65363000 29007000 31899000 29825000 36080000 37954000 34442000 44291000 5 5 3 5 5 5 5 5 5 5 5 6168000000 3715700000 2452300000 12666 1859 11765 67075;67076;67077;67078;67079;67080;67081 81074;81075;81076;81077;81078;81079;81080;81081;81082;81083 81075 10 LSCQNLGAVLDDVPVQGFFK Unmodified 2206.1092 0.10923946 1726 Q14690 PDCD11 Protein RRP5 homolog yes yes 0 0 0 0 By MS/MS 8 0 1 1 80.18 80.185 3 3.7136E-18 26485 20211116_3436_TMUAki_TMT10x_P_F8 143.71 126.64 3076500 5040600 18166 4714500 3065500 5658400 3421000 2669400 2872900 3414700 3947700 2864300 4702200 234430 4846700 2947000 5639000 3434500 2887200 2984800 3304200 3775000 2 2 1 2 2 2 2 2 2 2 2 3076500 5040600 18166 4714500 3065500 5658400 3421000 2669400 2872900 3414700 3947700 2864300 4702200 234430 4846700 2947000 5639000 3434500 2887200 2984800 3304200 3775000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 663040000 663040000 0 12667 1726 11766 67082 81084;81085 81084 2 LSCQPMLSLDDFQLQPPVTFR Oxidation (M) 2507.2189 0.21886626 349 O75607 NPM3 Nucleoplasmin-3 yes yes 0 0 1 0 By MS/MS By MS/MS 8 0 2 1 1 79.221 79.208 3 1.6472E-07 26099 20211116_3436_TMUAki_TMT10x_P_F8 91.883 79.035 2724000 5036700 83392 4376400 2814800 3823700 3835400 2683300 3051000 2720500 3387200 2536700 4697400 274140 4503000 2727600 3903800 3812700 2786900 3150100 2655500 3257100 2 2 1 2 2 2 2 2 2 2 2 1241000 2178100 0 1954900 1130500 2328900 1713500 1261400 1390300 1346800 1444900 1155200 2031600 70650 2015700 1096600 2325400 1697600 1338900 1430500 1311900 1392100 1 1 0 1 1 1 1 1 1 1 1 1483000 2858700 83392 2421500 1684200 1494800 2121900 1421900 1660700 1373700 1942300 1381500 2665800 203490 2487400 1631000 1578300 2115200 1448000 1719600 1343600 1865000 1 1 1 1 1 1 1 1 1 1 1 1835700000 966540000 869120000 12668 349 11767 67083;67084 81086;81087 81086 259 2 LSCVPVLIFANK Unmodified 1359.7584 0.75844309 947 P36405 ARL3 ADP-ribosylation factor-like protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 2 4 4 2 78.51 78.523 2;3 4.6639E-08 26350 20211116_3433_TMUAki_TMT10x_P_F5 140.16 109.09 20740000 31519000 91915 33377000 19128000 23072000 21460000 13819000 14650000 15809000 20613000 19310000 29418000 1650100 33765000 18397000 23932000 21435000 14576000 15414000 15357000 19700000 3 3 2 3 3 3 3 3 3 3 3 9188500 13589000 0 14439000 8192900 11816000 8048000 5613400 6426500 6657300 8790300 8554300 12683000 615420 14631000 7843500 12060000 8120800 6051600 6692700 6458900 8406500 1 1 0 1 1 1 1 1 1 1 1 11551000 17930000 91915 18939000 10935000 11256000 13412000 8205200 8224000 9151300 11823000 10756000 16735000 1034700 19134000 10553000 11872000 13314000 8524800 8721300 8898600 11294000 2 2 2 2 2 2 2 2 2 2 2 2947200000 1455500000 1491700000 12669 947 11768 67085;67086;67087;67088;67089;67090 81088;81089;81090;81091 81088 4 LSDETLLEISKR Unmodified 1402.7668 0.76675917 1188 P52789 HK2 Hexokinase-2 yes yes 0 0 0 1 By MS/MS By MS/MS 4.75 0.829 2 1 1 2 2 57.825 57.891 3 8.2635E-12 16765 20211116_3444_TMUAki_TMT10x_S_F5 164.48 137.07 8180600 13224000 20732 15038000 10657000 12879000 8428600 10113000 10441000 9133700 10847000 7616800 12346000 700800 15181000 10162000 13191000 8728300 10392000 10548000 8960800 10452000 2 2 1 2 2 2 2 2 2 2 2 4474400 7020900 20732 7785800 7216900 9499600 5726400 5381500 5632400 4869900 5533900 4166200 6554100 428690 7914400 6883700 9479400 5883600 5664100 5730600 4777300 5341400 1 1 1 1 1 1 1 1 1 1 1 3706200 6202900 0 7252000 3440100 3379400 2702100 4731500 4808200 4263800 5313600 3450600 5791900 272110 7266300 3277900 3711900 2844700 4728400 4817300 4183500 5110200 1 1 0 1 1 1 1 1 1 1 1 1226800000 562080000 664770000 12670 1188 11769 67091;67092;67093;67094 81092;81093;81094 81094 3 LSDFNDITNMLLLK Unmodified 1635.8542 0.85419397 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 6.7 2 1 1 4 4 7 3 81.636 81.641 2;3 2.7504E-52 28494 20211116_3435_TMUAki_TMT10x_P_F7 267.43 215.99 13383000 19800000 20639 21672000 13351000 14247000 15468000 5647600 5411400 7689700 13127000 12461000 18483000 911550 21866000 12853000 14779000 15268000 6237200 6219100 7426000 12424000 7 7 3 7 7 7 7 7 7 7 7 8756600 12701000 7596.4 13802000 8501100 10806000 10337000 3604800 3252700 4656800 8288200 8153000 11856000 696590 13958000 8195800 11031000 10170000 4060000 3797800 4504700 7839400 4 4 2 4 4 4 4 4 4 4 4 4626600 7099000 13043 7869300 4850100 3441300 5131700 2042800 2158700 3032900 4838900 4307800 6627000 214960 7907300 4657300 3747400 5098500 2177200 2421300 2921300 4585000 3 3 1 3 3 3 3 3 3 3 3 1975900000 1525900000 450040000 12671 1433 11770 67095;67096;67097;67098;67099;67100;67101;67102;67103;67104 81095;81096;81097;81098;81099;81100;81101;81102;81103 81097 9 LSDFNDITNMLLLK Oxidation (M) 1651.8491 0.84910859 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 2 3 79.765 79.776 2;3 6.4626E-09 27752 20211116_3435_TMUAki_TMT10x_P_F7 131.28 106.99 27237000 46137000 197010 41620000 32958000 39744000 34827000 32068000 32659000 33690000 35564000 25360000 43033000 2251500 42750000 31643000 40432000 35162000 33040000 33423000 32836000 34218000 7 7 3 7 7 7 7 7 7 7 7 7546400 11894000 188330 11465000 7201000 15168000 8970300 8458500 8509300 9189400 9209700 7027900 11097000 796330 11782000 6960500 15073000 8992100 8960500 8701800 8944700 8862600 2 2 2 2 2 2 2 2 2 2 2 19691000 34242000 8687.7 30155000 25757000 24576000 25857000 23609000 24150000 24500000 26355000 18332000 31936000 1455100 30968000 24683000 25359000 26170000 24080000 24721000 23891000 25355000 5 5 1 5 5 5 5 5 5 5 5 3275900000 1591400000 1684500000 12672 1433 11770 67105;67106;67107;67108;67109 81104;81105;81106;81107;81108;81109;81110 81104 1939 7 LSDGFNGADLR Unmodified 1163.5571 0.55710075 1357 P62333 PSMC6 26S protease regulatory subunit 10B yes yes 0 0 0 0 By MS/MS 4 0 1 1 49.261 49.418 2 0.0060027 14158 20211116_3431_TMUAki_TMT10x_P_F4 71.03 47.075 3507300 5447600 0 5288700 10294000 12334000 6039700 8673300 8692100 6425000 6005700 3265500 5082600 377200 5512000 9762700 12049000 6430900 8935900 8631300 6367600 5876700 1 1 0 1 1 1 1 1 1 1 1 3507300 5447600 0 5288700 10294000 12334000 6039700 8673300 8692100 6425000 6005700 3265500 5082600 377200 5512000 9762700 12049000 6430900 8935900 8631300 6367600 5876700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 164460000 164460000 0 12673 1357 11771 67110 81111 81111 1 LSDGVAVLK Unmodified 900.52803 0.52803245 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5.14 1.25 1 1 2 2 1 4 3 54.008 54.162 2 0.0001999 17585 20211116_3446_TMUAki_TMT10x_S_F7 134.91 80.502 106820000 165040000 278770 185770000 159560000 148360000 111210000 95449000 95407000 95871000 130160000 99453000 154080000 8837600 187490000 151730000 152250000 114840000 99729000 98985000 93615000 124490000 8 8 2 8 8 8 8 8 8 8 8 62395000 94982000 278770 107190000 112930000 112450000 67961000 55214000 53802000 56539000 74903000 58095000 88674000 5832500 108570000 107150000 112950000 70849000 59066000 56103000 55165000 71603000 5 5 2 5 5 5 5 5 5 5 5 44424000 70058000 0 78574000 46630000 35902000 43244000 40235000 41605000 39332000 55259000 41358000 65403000 3005100 78918000 44580000 39304000 43990000 40663000 42882000 38451000 52883000 3 3 0 3 3 3 3 3 3 3 3 7575000000 4196900000 3378100000 12674 613 11772 67111;67112;67113;67114;67115;67116;67117 81112;81113;81114;81115;81116;81117;81118;81119 81119 8 LSDLDSETR Unmodified 1034.488 0.48801813 3226 Q9Y266 NUDC Nuclear migration protein nudC yes yes 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 38.806 38.797 2 6.2149E-06 9570 20211116_3440_TMUAki_TMT10x_S_F2 167.23 120.16 1198700 2005800 6350 2207800 1178400 948660 1195100 1068600 1096500 1005400 1582800 1116100 1872400 102870 2219200 1130600 1046800 1208300 1078600 1137100 984530 1511900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1198700 2005800 6350 2207800 1178400 948660 1195100 1068600 1096500 1005400 1582800 1116100 1872400 102870 2219200 1130600 1046800 1208300 1078600 1137100 984530 1511900 2 2 1 2 2 2 2 2 2 2 2 60890000 0 60890000 12675 3226 11773 67118;67119;67120 81120;81121;81122 81122 3 LSDLLAPISEQIK Unmodified 1425.8079 0.80789571 1482 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.72 1.15 4 3 5 6 11 7 75.472 75.488 2;3 4.1451E-30 25955 20211116_3436_TMUAki_TMT10x_P_F8 253.71 201.31 78937000 129050000 387500 132000000 79370000 112450000 86752000 63022000 64644000 74301000 89964000 73497000 120420000 6495500 134160000 76286000 114660000 86926000 66909000 67630000 72101000 86001000 14 14 5 14 14 14 14 14 14 14 14 48591000 80627000 330250 80898000 50501000 82294000 54719000 39471000 40009000 45219000 55037000 45243000 75235000 4103300 82531000 48532000 82787000 54828000 42465000 41879000 43926000 52627000 9 9 3 9 9 9 9 9 9 9 9 30346000 48418000 57251 51101000 28869000 30160000 32033000 23551000 24635000 29082000 34927000 28254000 45189000 2392200 51628000 27754000 31868000 32098000 24444000 25751000 28175000 33374000 5 5 2 5 5 5 5 5 5 5 5 16248000000 8684500000 7563200000 12676 1482 11774 67121;67122;67123;67124;67125;67126;67127;67128;67129;67130;67131;67132;67133;67134;67135;67136;67137;67138 81123;81124;81125;81126;81127;81128;81129;81130;81131;81132;81133;81134;81135;81136;81137;81138;81139 81131 17 LSDQFHDILIR Unmodified 1355.7197 0.7197494 322 O75340;O75340-2 PDCD6 Programmed cell death protein 6 yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 57.87 57.996 3 0.067196 17917 20211116_3433_TMUAki_TMT10x_P_F5 36.447 26.559 19264000 37367000 401530 28947000 26172000 43613000 27743000 35798000 35115000 38918000 31493000 17939000 34835000 2051000 30344000 25158000 43350000 28287000 36885000 35272000 37881000 30492000 2 2 1 2 2 2 2 2 2 2 2 8402000 15767000 0 11976000 12711000 28066000 13188000 15184000 14446000 16367000 12503000 7822900 14698000 739860 12726000 12199000 27310000 13391000 16124000 14573000 15936000 12121000 1 1 0 1 1 1 1 1 1 1 1 10862000 21599000 401530 16971000 13461000 15548000 14556000 20614000 20668000 22551000 18990000 10117000 20137000 1311100 17618000 12959000 16041000 14896000 20761000 20699000 21945000 18371000 1 1 1 1 1 1 1 1 1 1 1 577990000 268020000 309980000 12677 322 11775 67139;67140;67141 81140;81141 81140 2 LSDVDANTAIKHEEQSNEDIPIAEQSSK Unmodified 3067.4582 0.45818115 1573 Q12888;Q12888-3;Q12888-2 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 0 1 By MS/MS 4 0 1 1 53.168 53.216 4 1.1152E-18 16215 20211116_3442_TMUAki_TMT10x_S_F4 139.4 127.87 4191800 8785500 70721 8457100 5319300 5895000 2948300 13391000 12145000 10750000 9216400 3903400 8196600 412000 8612500 5044000 6331900 3399200 13157000 11849000 10608000 8981400 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4191800 8785500 70721 8457100 5319300 5895000 2948300 13391000 12145000 10750000 9216400 3903400 8196600 412000 8612500 5044000 6331900 3399200 13157000 11849000 10608000 8981400 3 3 2 3 3 3 3 3 3 3 3 434640000 0 434640000 12678 1573 11776 67142 81142;81143;81144 81143 3 LSDVTLVPVSCSELEK Unmodified 1774.9023 0.90226638 451 O95865 DDAH2 N(G),N(G)-dimethylarginine dimethylaminohydrolase 2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.71 1.03 1 2 2 2 4 3 72.214 72.206 3 8.3932E-11 23748 20211116_3433_TMUAki_TMT10x_P_F5 130.98 100.85 13034000 23693000 135540 23432000 17564000 25007000 16544000 16876000 16564000 16680000 17675000 12137000 22107000 1232300 23947000 16821000 25195000 16835000 17563000 16889000 16299000 17016000 4 4 2 4 4 4 4 4 4 4 4 7082800 13358000 128250 13209000 9727600 18166000 9409200 9364700 9774800 9584600 9919300 6595600 12464000 726200 13560000 9325900 18003000 9572100 9972100 9933400 9351800 9564300 2 2 1 2 2 2 2 2 2 2 2 5951400 10335000 7294.7 10223000 7836600 6841100 7134300 7511500 6789000 7095600 7755900 5541200 9643500 506080 10387000 7495600 7192900 7262700 7590900 6956100 6947100 7451900 2 2 1 2 2 2 2 2 2 2 2 1619000000 665020000 953980000 12679 451 11777 67143;67144;67145;67146;67147;67148;67149 81145;81146;81147;81148;81149;81150;81151;81152 81147 8 LSEDYGVLK Unmodified 1022.5284 0.52842638 899 P32119 PRDX2 Peroxiredoxin-2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 3 1 54.57 54.713 2 2.3542E-05 16791 20211116_3442_TMUAki_TMT10x_S_F4 141.23 74.973 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12680 899 11778 67150;67151;67152;67153 81153;81154;81155;81156 81156 4 LSEDYGVLKTDEGIAYR Unmodified 1927.9527 0.95272204 899 P32119 PRDX2 Peroxiredoxin-2 yes yes 0 0 0 1 By MS/MS By MS/MS 3.78 1.31 2 2 2 2 1 4 5 59.379 59.287 3 1.145E-21 19360 20211116_3429_TMUAki_TMT10x_P_F2 171.04 152.1 253800000 454620000 810470 407820000 364690000 432780000 284320000 406340000 401640000 331600000 366210000 236300000 424030000 17716000 419720000 347510000 438750000 296230000 412240000 402200000 326930000 354360000 17 17 6 17 17 17 17 17 17 17 17 100760000 187420000 81082 154530000 177650000 287230000 151520000 175760000 168010000 136970000 147050000 93812000 174760000 5970200 161950000 169620000 281920000 155570000 183170000 169460000 135370000 142500000 7 7 1 7 7 7 7 7 7 7 7 153040000 267190000 729390 253290000 187040000 145550000 132800000 230580000 233630000 194620000 219160000 142490000 249270000 11745000 257770000 177890000 156830000 140660000 229070000 232750000 191560000 211860000 10 10 5 10 10 10 10 10 10 10 10 19679000000 11365000000 8313700000 12681 899 11779 67154;67155;67156;67157;67158;67159;67160;67161;67162 81157;81158;81159;81160;81161;81162;81163;81164;81165;81166;81167;81168;81169;81170;81171;81172;81173 81157 17 LSEEASQALIEAYVDMR Oxidation (M) 1939.9197 0.91970735 911 P33991 MCM4 DNA replication licensing factor MCM4 yes yes 0 0 1 0 By MS/MS By MS/MS 2.8 1.17 1 1 1 2 3 2 78.137 78.107 3 1.819E-05 25704 20211116_3440_TMUAki_TMT10x_S_F2 86.367 74.784 5194800 8666100 193500 8539400 5550700 7807300 6189100 5411400 5385700 5852300 7046100 4838300 8085900 616010 8709600 5350000 7944900 6219600 5636000 5573100 5697500 6745700 2 2 2 2 2 2 2 2 2 2 2 2460700 3738900 63138 3540300 2130100 4133100 2621200 1907400 2109600 2247300 2939100 2291700 3488000 258220 3634600 2058700 4124000 2617300 2061800 2198000 2180800 2809500 1 1 1 1 1 1 1 1 1 1 1 2734100 4927200 130370 4999100 3420600 3674200 3567800 3504000 3276100 3605000 4107000 2546700 4597900 357790 5075000 3291400 3820900 3602300 3574300 3375100 3516700 3936200 1 1 1 1 1 1 1 1 1 1 1 3164200000 1396300000 1768000000 12682 911 11780 67163;67164;67165;67166;67167 81174;81175 81175 1124 2 LSEEASQALIEAYVDMRK Oxidation (M) 2068.0147 0.014670371 911 P33991 MCM4 DNA replication licensing factor MCM4 yes yes 0 0 1 1 By MS/MS 4.5 0.5 1 1 2 74.08 74.09 3 0.0018212 23408 20211116_3444_TMUAki_TMT10x_S_F5 60.764 44.079 2030400 3554900 33791 3199200 2978900 2484100 2300000 2746700 3106700 2798400 3113200 1890800 3315700 213110 3278100 2841300 2580600 2393500 2780900 3125400 2731000 3003000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2030400 3554900 33791 3199200 2978900 2484100 2300000 2746700 3106700 2798400 3113200 1890800 3315700 213110 3278100 2841300 2580600 2393500 2780900 3125400 2731000 3003000 1 1 1 1 1 1 1 1 1 1 1 366440000 0 366440000 12683 911 11781 67168;67169 81176;81177 81177 1124 2 LSEEEILENPDLFLTSEATDYGR Unmodified 2640.2443 0.24427219 1701 Q14257;Q14257-2 RCN2 Reticulocalbin-2 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 4 1 3 79.759 79.735 2;3 1.8429E-103 26187 20211116_3428_TMUAki_TMT10x_P_F1 326.89 308.82 9835800 17242000 250080 14248000 13111000 14628000 12851000 9852100 8929000 11213000 12973000 9159100 16078000 987590 14752000 12573000 14771000 12928000 10299000 9398800 10895000 12389000 4 4 2 4 4 4 4 4 4 4 4 1779700 2802200 0 2472000 1620100 3637000 2309100 2030800 1810200 2103900 2639200 1656900 2613500 126800 2562600 1569600 3597200 2290800 2148000 1892800 2051800 2520300 1 1 0 1 1 1 1 1 1 1 1 8056100 14440000 250080 11776000 11491000 10991000 10542000 7821300 7118800 9109400 10334000 7502200 13464000 860790 12190000 11004000 11174000 10637000 8150700 7506000 8843700 9869000 3 3 2 3 3 3 3 3 3 3 3 4584000000 1150200000 3433800000 12684 1701 11782 67170;67171;67172;67173 81178;81179;81180;81181;81182 81178 5 LSEEFLTAHPR Unmodified 1298.6619 0.66190017 1831 Q15813;Q15813-2 TBCE Tubulin-specific chaperone E yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 44.715 44.871 3 1.169E-06 11486 20211116_3444_TMUAki_TMT10x_S_F5 123.38 104.07 4155900 6198200 17783 7248700 5907300 5244100 4248900 4499200 4486500 3790200 5469400 3869500 5787500 359920 7290700 5621900 5449300 4403900 4590800 4588700 3730900 5245700 3 3 2 3 3 3 3 3 3 3 3 1588700 2182900 3228.5 2819600 3329800 3261400 1911000 1876300 1739200 1445900 2247600 1479300 2039300 159110 2838100 3157300 3264100 2007300 1964700 1794900 1429800 2152500 1 1 1 1 1 1 1 1 1 1 1 2567200 4015300 14555 4429100 2577500 1982700 2337900 2622900 2747300 2344300 3221800 2390200 3748200 200810 4452600 2464700 2185200 2396700 2626100 2793800 2301000 3093300 2 2 1 2 2 2 2 2 2 2 2 549510000 289890000 259620000 12685 1831 11783 67174;67175;67176 81183;81184;81185 81185 3 LSEELSGGR Unmodified 946.47197 0.47197413 1296 P61158;Q9P1U1;Q9P1U1-2 ACTR3;ACTR3B Actin-related protein 3;Actin-related protein 3B yes no 0 0 0 0 By MS/MS 2 0 1 1 36.408 36.507 2 3.0592E-05 8753 20211116_3440_TMUAki_TMT10x_S_F2 108.3 46.196 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12686 1296 11784 67177 81186 81186 1 LSEGFSIHTR Unmodified 1145.5829 0.58292157 745 P20618 PSMB1 Proteasome subunit beta type-1 yes yes 0 0 0 0 By MS/MS By MS/MS 4 3.29 2 1 2 2 3 38.706 38.843 3 0.038716 9514 20211116_3436_TMUAki_TMT10x_P_F8 44.564 30.569 1966600 3206900 71689 3316000 2615700 2407800 2279200 2204900 4199600 2126100 2652400 1831600 2992800 234880 3361600 2503700 2504400 2388900 2249600 4133400 2079700 2606600 3 3 2 3 3 3 3 3 3 3 3 480650 767500 0 757510 1008600 959810 585470 566890 1216300 536190 604260 447500 716120 43178 776520 956210 956490 635520 595280 1188100 524940 601860 1 1 0 1 1 1 1 1 1 1 1 1485900 2439400 71689 2558500 1607100 1448000 1693700 1638000 2983200 1589900 2048200 1384100 2276700 191700 2585000 1547500 1547900 1753400 1654400 2945300 1554800 2004700 2 2 2 2 2 2 2 2 2 2 2 65964000 32662000 33302000 12687 745 11785 67178;67179;67180;67181;67182 81187;81188;81189 81187 3 LSEGSQPAEEEEDQETPSR Unmodified 2116.9033 0.90326525 3160 Q9UKV3;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 0 0 0 0 By MS/MS 1 0 1 1 34.485 34.485 3 1.269E-41 7760 20211116_3428_TMUAki_TMT10x_P_F1 200.45 194.91 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12688 3160 11786 67183 81190 81190 1 LSEHATAPTR Unmodified 1081.5516 0.55162144 908 P33316;P33316-2 DUT Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial yes no 0 0 0 0 By MS/MS 3 0 1 1 27.013 26.72 3 0.025575 7814 20211116_3441_TMUAki_TMT10x_S_F3 51.762 10.645 78355 122700 0 88169 90216 102090 87017 92185 76241 78142 90033 72953 114370 6329.7 92595 86401 102920 88098 93807 78523 76896 86425 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78355 122700 0 88169 90216 102090 87017 92185 76241 78142 90033 72953 114370 6329.7 92595 86401 102920 88098 93807 78523 76896 86425 1 1 0 1 1 1 1 1 1 1 1 1471600 0 1471600 12689 908 11787 67184 81191 81191 1 LSEIPLTLHSVSELVR Unmodified 1792.0094 0.0094490594 3135 Q9UIG0;Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 76.517 76.577 3 2.7376E-51 24461 20211116_3447_TMUAki_TMT10x_S_F8 238.17 199.66 5548200 9072500 162200 7929600 5192200 10819000 6391600 6047300 5976700 6598700 6195000 5167100 8461300 606170 8213400 5018500 10736000 6407700 6405800 6106200 6421900 5969400 2 2 2 2 2 2 2 2 2 2 2 5548200 9072500 162200 7929600 5192200 10819000 6391600 6047300 5976700 6598700 6195000 5167100 8461300 606170 8213400 5018500 10736000 6407700 6405800 6106200 6421900 5969400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2745700000 2745700000 0 12690 3135 11788 67185;67186;67187 81192;81193;81194 81194 3 LSELDDRADALQAGASQFETSAAK Unmodified 2493.1983 0.19832505 1392;1834 Q15836;P63027 VAMP3;VAMP2 Vesicle-associated membrane protein 3;Vesicle-associated membrane protein 2 no no 0 0 0 1 By MS/MS By MS/MS 4.33 0.943 1 3 1 1 3 3 65.21 65.167 3;4 1.8644E-127 20705 20211116_3431_TMUAki_TMT10x_P_F4 339.62 284.03 62896000 107790000 545490 104460000 80014000 93930000 76409000 73824000 67913000 68804000 83505000 58562000 100570000 5408300 106640000 76628000 95887000 77430000 75924000 70015000 67404000 80072000 13 13 7 13 13 13 13 13 13 13 13 31147000 49865000 460810 49649000 34843000 56361000 37350000 32049000 29392000 29091000 36985000 29003000 46528000 2857600 50766000 33487000 56456000 37508000 33723000 30519000 28533000 35443000 6 6 5 6 6 6 6 6 6 6 6 31749000 57926000 84685 54808000 45171000 37569000 39058000 41776000 38521000 39713000 46520000 29559000 54039000 2550700 55876000 43141000 39431000 39922000 42201000 39496000 38871000 44629000 7 7 2 7 7 7 7 7 7 7 7 8879500000 5365500000 3514000000 12691 1834;1392 11789 67188;67189;67190;67191;67192;67193 81195;81196;81197;81198;81199;81200;81201;81202;81203;81204;81205;81206;81207 81198 13 LSELLPEEVEAEVK Unmodified 1583.8294 0.82941901 3254 Q9Y2X3 NOP58 Nucleolar protein 58 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 77.451 77.424 3 0.084343 27201 20211116_3439_TMUAki_TMT10x_S_F1 30.107 14.218 58842000 100210000 248060 95265000 71356000 68563000 83005000 26122000 21331000 36513000 59178000 54790000 93485000 5284900 97136000 68728000 70540000 81677000 29012000 25742000 35233000 55915000 2 2 2 2 2 2 2 2 2 2 2 26133000 44233000 96068 41325000 31522000 42944000 39489000 13576000 10267000 17197000 26639000 24333000 41263000 2331600 42388000 30431000 42989000 38734000 15394000 12305000 16647000 25191000 1 1 1 1 1 1 1 1 1 1 1 32709000 55974000 151990 53941000 39834000 25619000 43516000 12546000 11063000 19316000 32539000 30457000 52222000 2953300 54749000 38296000 27552000 42943000 13619000 13437000 18586000 30724000 1 1 1 1 1 1 1 1 1 1 1 868940000 450140000 418800000 12692 3254 11790 67194;67195 81208;81209 81209 2 LSENNIQTIFAVTEEFQPVYK Unmodified 2469.2428 0.24275605 510 P05556-4;P05556-3;P05556;P05556-2;P05556-5 ITGB1 Integrin beta-1 yes no 0 0 0 0 By MS/MS 7 0 1 1 81.126 81.159 3 4.7348E-05 28750 20211116_3446_TMUAki_TMT10x_S_F7 71.853 51.414 953470 1607100 5811.4 1520200 1153000 1048400 1151400 896850 777100 924290 1149400 887810 1499300 87260 1550000 1105900 1093800 1156400 920330 820160 901580 1097300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 953470 1607100 5811.4 1520200 1153000 1048400 1151400 896850 777100 924290 1149400 887810 1499300 87260 1550000 1105900 1093800 1156400 920330 820160 901580 1097300 1 1 1 1 1 1 1 1 1 1 1 880350000 0 880350000 12693 510 11791 67196 81210 81210 1 LSEQELQFR Unmodified 1148.5826 0.58258722 1872 Q16891;Q16891-2;Q16891-4;Q16891-3 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 By MS/MS By MS/MS 3 0.707 1 2 1 3 1 49.928 49.758 2 3.2541E-05 14314 20211116_3431_TMUAki_TMT10x_P_F4 117.84 66.089 7833500 12347000 93607 15331000 17801000 18559000 11123000 9768700 9959100 8260500 10661000 7294400 11532000 865920 15478000 16906000 18510000 11595000 10331000 10208000 8129800 10263000 3 3 2 3 3 3 3 3 3 3 3 7833500 12347000 93607 15331000 17801000 18559000 11123000 9768700 9959100 8260500 10661000 7294400 11532000 865920 15478000 16906000 18510000 11595000 10331000 10208000 8129800 10263000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 519080000 519080000 0 12694 1872 11792 67197;67198;67199;67200 81211;81212;81213;81214;81215 81214 5 LSESQLSFR Unmodified 1065.5455 0.54547343 2534 Q96PK6 RBM14 RNA-binding protein 14 yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 47.789 47.938 2 6.7815E-05 12692 20211116_3444_TMUAki_TMT10x_S_F5 144.66 103.15 15306000 23560000 14398 30612000 25386000 22910000 15903000 23328000 23971000 18891000 24149000 14252000 22011000 1387200 30616000 24101000 23824000 16876000 23564000 24039000 18633000 23291000 5 5 3 5 5 5 5 5 5 5 5 5565600 8495600 10239 11794000 16664000 15336000 8758700 8738000 8871700 6858700 9099700 5181900 7939600 590410 11852000 15778000 15257000 9301200 9160900 9028600 6776000 8771100 2 2 1 2 2 2 2 2 2 2 2 9740900 15065000 4159 18818000 8721800 7573500 7144000 14590000 15099000 12033000 15050000 9069700 14071000 796810 18764000 8323400 8566600 7575200 14403000 15011000 11857000 14520000 3 3 2 3 3 3 3 3 3 3 3 1191500000 700490000 491050000 12695 2534 11793 67201;67202;67203;67204 81216;81217;81218;81219;81220 81219 5 LSESVLSPPCFVR Unmodified 1489.7599 0.75989966 2387 Q93009;Q93009-3 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes no 0 0 0 0 By MS/MS 8 0 1 1 66.726 66.638 2 1.8443E-18 20374 20211116_3447_TMUAki_TMT10x_S_F8 159.83 131.65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12696 2387 11794 67205 81221 81221 1 LSEVLQAVTDHDIPQQLVER Unmodified 2289.1965 0.19647456 2387 Q93009;Q93009-3 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes no 0 0 0 0 By matching By MS/MS 4.33 0.471 2 1 1 2 78.169 78.162 3 1.1801E-06 25093 20211116_3444_TMUAki_TMT10x_S_F5 85.945 64.104 3019200 4800900 204580 5690600 3813200 3553500 4195200 3232800 2912500 2880500 3683500 2812700 4483100 452100 5710600 3678300 3744600 4195700 3292500 3046500 2827800 3529400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3019200 4800900 204580 5690600 3813200 3553500 4195200 3232800 2912500 2880500 3683500 2812700 4483100 452100 5710600 3678300 3744600 4195700 3292500 3046500 2827800 3529400 1 1 1 1 1 1 1 1 1 1 1 3095800000 1103900000 1991900000 12697 2387 11795 67206;67207;67208 81222 81222 1 LSFAHPPSAEVEAIALATLHDR Unmodified 2344.2175 0.21754435 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 0 By MS/MS By MS/MS 6.2 2.64 1 2 2 3 2 74.35 74.398 4 1.4989E-35 25883 20211116_3446_TMUAki_TMT10x_S_F7 193.47 182.98 20025000 33037000 659410 29457000 22046000 30417000 24292000 20281000 17170000 19984000 22255000 18650000 30814000 2301300 30318000 21235000 30700000 24302000 21123000 17960000 19529000 21311000 9 9 7 9 9 9 9 9 9 9 9 11111000 17642000 512310 16222000 10805000 21087000 14141000 11286000 9113300 10902000 11973000 10349000 16457000 1394300 16722000 10475000 20962000 14013000 11958000 9592700 10663000 11461000 5 5 5 5 5 5 5 5 5 5 5 8914000 15395000 147100 13235000 11241000 9329500 10151000 8995900 8057200 9081600 10282000 8300900 14357000 907030 13596000 10760000 9737700 10289000 9165800 8367400 8866000 9849600 4 4 2 4 4 4 4 4 4 4 4 5823400000 3042600000 2780800000 12698 157 11796 67209;67210;67211;67212;67213 81223;81224;81225;81226;81227;81228;81229;81230;81231 81229 9 LSFAVPFR Unmodified 935.52289 0.52288749 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 67.102 67.19 2 0.0028082 21431 20211116_3431_TMUAki_TMT10x_P_F4 105.04 84.169 4167500 6795300 0 6313800 6208500 10606000 5873900 5627800 6112200 5494800 5673900 3880000 6338900 336310 6539300 5942100 10429000 5983100 5969200 6192100 5372000 5487000 1 1 0 1 1 1 1 1 1 1 1 4167500 6795300 0 6313800 6208500 10606000 5873900 5627800 6112200 5494800 5673900 3880000 6338900 336310 6539300 5942100 10429000 5983100 5969200 6192100 5372000 5487000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 419680000 419680000 0 12699 1433 11797 67214;67215 81232;81233 81232 2 LSFEDFVTMTASR Oxidation (M) 1518.7024 0.70244436 3092 Q9UBV8 PEF1 Peflin yes yes 0 0 1 0 By MS/MS 6 0 1 1 74.44 74.366 2 0.10628 23830 20211116_3445_TMUAki_TMT10x_S_F6 51.276 38.223 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12700 3092 11798 67216 81234 81234 3134 1 LSFGDTLQVQNIHGAFNALGGADR Unmodified 2500.2459 0.24588437 2400 Q969X5;Q969X5-2 ERGIC1 Endoplasmic reticulum-Golgi intermediate compartment protein 1 yes no 0 0 0 0 By MS/MS 4.5 3.5 1 1 2 74.624 74.511 3 2.2995E-22 25986 20211116_3439_TMUAki_TMT10x_S_F1 143.17 125.87 3037800 5402400 10547 4865700 4278200 4166500 4263600 3225100 3086500 3442300 4011600 2828600 5039000 279060 4991300 4102400 4266600 4289100 3333100 3224300 3353000 3841200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3037800 5402400 10547 4865700 4278200 4166500 4263600 3225100 3086500 3442300 4011600 2828600 5039000 279060 4991300 4102400 4266600 4289100 3333100 3224300 3353000 3841200 2 2 2 2 2 2 2 2 2 2 2 918720000 0 918720000 12701 2400 11799 67217;67218 81235;81236 81235 2 LSFPSIKPDTDQTLKK Unmodified 1816.9935 0.99346464 2364 Q92785;Q92785-2 DPF2 Zinc finger protein ubi-d4 yes no 0 0 0 2 By MS/MS By MS/MS 2 0 2 1 1 57.528 57.291 4 2.5688E-10 18582 20211116_3429_TMUAki_TMT10x_P_F2 126.84 105.24 11234000 18993000 34850 20612000 15789000 17181000 11640000 18013000 18896000 16965000 18119000 10459000 17729000 960680 20862000 15033000 17733000 12248000 18241000 18878000 16612000 17502000 2 2 1 2 2 2 2 2 2 2 2 4277000 6862000 0 7715900 9800500 11048000 6455000 6199600 7039100 6316000 6546600 3981800 6406100 365000 7861000 9308700 10940000 6740600 6551500 7118000 6163800 6330500 1 1 0 1 1 1 1 1 1 1 1 6956700 12131000 34850 12896000 5988700 6133500 5184900 11813000 11856000 10649000 11572000 6477700 11322000 595680 13001000 5724100 6793100 5507800 11690000 11760000 10449000 11172000 1 1 1 1 1 1 1 1 1 1 1 1792800000 1084100000 708720000 12702 2364 11800 67219;67220 81237;81238 81237 2 LSFQHDPETSVLVLR Unmodified 1739.9206 0.92063405 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 By MS/MS By MS/MS 5.7 2 1 1 2 2 2 2 5 5 59.255 59.468 3 9.219E-10 17347 20211116_3434_TMUAki_TMT10x_P_F6 129.29 107.25 40571000 71600000 885460 68055000 58222000 87619000 50204000 77307000 69896000 68324000 62952000 37782000 66797000 4316800 69970000 55670000 87822000 51953000 78852000 69999000 67099000 60942000 12 12 9 12 12 12 12 12 12 12 12 20430000 34887000 409220 34423000 31528000 61807000 30417000 38982000 35336000 34707000 30949000 19025000 32551000 2160000 35559000 30223000 60763000 31064000 40658000 35578000 34073000 29991000 6 6 5 6 6 6 6 6 6 6 6 20142000 36713000 476240 33632000 26694000 25812000 19787000 38325000 34560000 33617000 32003000 18757000 34245000 2156800 34411000 25448000 27059000 20889000 38194000 34421000 33026000 30951000 6 6 4 6 6 6 6 6 6 6 6 6512600000 3076600000 3436000000 12703 1730 11801 67221;67222;67223;67224;67225;67226;67227;67228;67229;67230 81239;81240;81241;81242;81243;81244;81245;81246;81247;81248;81249;81250;81251 81241 13 LSFVTVDSNLRR Unmodified 1405.7678 0.76776222 30 CON__ENSEMBL:ENSBTAP00000024146 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 51.023 50.819 3 0.00032738 15906 20211116_3429_TMUAki_TMT10x_P_F2 82.705 57.488 + 5564400 9384900 9488.8 9688600 10715000 11184000 7247300 10153000 11757000 9281600 9772300 5180900 8758200 521820 9884800 10186000 11278000 7672200 10349000 11693000 9100800 9488500 2 2 1 2 2 2 2 2 2 2 2 2510500 4473400 0 4774500 7803500 8235000 4444900 5228600 5694300 4631600 4725900 2337400 4175300 261790 4901200 7396600 8108300 4723000 5449900 5703900 4548000 4588900 1 1 0 1 1 1 1 1 1 1 1 3053900 4911500 9488.8 4914100 2911400 2949100 2802400 4924300 6062900 4650000 5046400 2843500 4583000 260030 4983600 2789500 3169900 2949200 4898800 5989200 4552700 4899600 1 1 1 1 1 1 1 1 1 1 1 504220000 350780000 153450000 12704 30 11802 67231;67232 81252;81253 81252 2 LSFYETGEIPRK Unmodified 1438.7456 0.7456298 103 O00567 NOP56 Nucleolar protein 56 yes yes 0 0 0 1 By MS/MS By MS/MS 6.4 1.02 1 2 1 1 2 3 52.78 52.948 3 1.5279E-12 14619 20211116_3434_TMUAki_TMT10x_P_F6 177.04 137.17 44878000 72203000 853660 84122000 67264000 69447000 47240000 61922000 63733000 57698000 63610000 41792000 67418000 4752000 84757000 64039000 71484000 49475000 63211000 64111000 56525000 61366000 7 7 5 7 7 7 7 7 7 7 7 19679000 31496000 300440 38731000 44146000 49123000 28236000 26921000 29109000 25555000 27777000 18325000 29416000 2254200 39157000 41948000 48904000 29500000 28451000 29528000 25014000 26837000 3 3 3 3 3 3 3 3 3 3 3 25199000 40707000 553220 45391000 23118000 20324000 19003000 35001000 34624000 32144000 35833000 23466000 38002000 2497700 45601000 22092000 22581000 19975000 34760000 34583000 31511000 34529000 4 4 2 4 4 4 4 4 4 4 4 4411500000 1351100000 3060500000 12705 103 11803 67233;67234;67235;67236;67237 81254;81255;81256;81257;81258;81259;81260 81256 7 LSGFSFK Unmodified 784.41194 0.41194006 857 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate yes yes 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 60.678 60.357 2 0.0024931 20294 20211116_3430_TMUAki_TMT10x_P_F3 125.25 50.837 33455000 48038000 0 60232000 60845000 52993000 35660000 30724000 39596000 31603000 42802000 31149000 44870000 3020200 60477000 57699000 53932000 37610000 32388000 40224000 30829000 41190000 3 3 0 3 3 3 3 3 3 3 3 19653000 28529000 0 34405000 51954000 43229000 24470000 18357000 23055000 18803000 25309000 18298000 26642000 1989900 34815000 49119000 42936000 26214000 19933000 23596000 18346000 24345000 2 2 0 2 2 2 2 2 2 2 2 13802000 19509000 0 25827000 8891100 9763700 11189000 12366000 16541000 12800000 17493000 12851000 18227000 1030300 25662000 8580000 10996000 11395000 12455000 16628000 12484000 16846000 1 1 0 1 1 1 1 1 1 1 1 2424700000 1493600000 931070000 12706 857 11804 67238;67239;67240;67241;67242 81261;81262;81263;81264;81265 81263 5 LSGFSFKK Unmodified 912.5069 0.50690308 857 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 51.734 51.925 3 0.0055209 15390 20211116_3433_TMUAki_TMT10x_P_F5 82.749 39.503 29424000 46170000 272790 50799000 56893000 41655000 29061000 38449000 41147000 31706000 44707000 27398000 43099000 3078400 51360000 53868000 42928000 31307000 39052000 41457000 31243000 43017000 4 4 4 4 4 4 4 4 4 4 4 11186000 17106000 209630 18101000 38640000 27347000 14108000 14318000 15821000 11630000 16623000 10417000 15965000 1507300 18534000 36446000 26996000 15646000 15134000 16049000 11470000 16010000 2 2 2 2 2 2 2 2 2 2 2 18238000 29064000 63160 32699000 18253000 14308000 14953000 24132000 25325000 20075000 28084000 16982000 27134000 1571100 32826000 17423000 15932000 15661000 23918000 25408000 19774000 27007000 2 2 2 2 2 2 2 2 2 2 2 1685000000 1019700000 665310000 12707 857 11805 67243;67244;67245 81266;81267;81268;81269;81270 81266 5 LSGGIDFNQPLVITR Unmodified 1628.8886 0.88860564 1904 Q53GG5-2;Q53GG5-3;Q53GG5 PDLIM3 PDZ and LIM domain protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 2 4 3 3 71.733 71.692 2;3 5.8227E-39 24848 20211116_3439_TMUAki_TMT10x_S_F1 257.19 215 22297000 38051000 132620 35025000 24179000 34105000 26008000 25991000 25232000 27223000 27957000 20761000 35494000 1965400 35931000 23236000 34618000 26261000 26872000 25800000 26536000 26884000 6 6 4 6 6 6 6 6 6 6 6 10186000 17300000 46913 16120000 10367000 20900000 12665000 12493000 11900000 12377000 12871000 9484300 16139000 861300 16600000 9998800 20808000 12702000 13123000 12174000 12093000 12386000 3 3 2 3 3 3 3 3 3 3 3 12111000 20750000 85703 18905000 13812000 13205000 13343000 13498000 13332000 14845000 15086000 11277000 19355000 1104100 19331000 13237000 13810000 13559000 13750000 13625000 14443000 14499000 3 3 2 3 3 3 3 3 3 3 3 5134500000 3038700000 2095800000 12708 1904 11806 67246;67247;67248;67249;67250;67251 81271;81272;81273;81274;81275;81276;81277 81274 7 LSGLNAFDIAEELVK Unmodified 1617.8614 0.86138784 454 O95983;O95983-2 MBD3 Methyl-CpG-binding domain protein 3 yes no 0 0 0 0 By MS/MS 6 0 1 1 81.148 81.136 3 0.052988 26193 20211116_3434_TMUAki_TMT10x_P_F6 40.962 26.704 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12709 454 11807 67252 81278 81278 1 LSGSNPYTTVTPQIINSK Unmodified 1919 6.5851E-06 235 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 By MS/MS By MS/MS 1.6 0.49 2 3 3 2 62.441 62.241 2;3 3.8997E-52 20629 20211116_3429_TMUAki_TMT10x_P_F2 230.23 202.9 21339000 37179000 172430 35858000 24841000 32298000 23321000 29284000 28755000 28688000 29255000 19869000 34687000 1918700 36621000 23787000 33055000 23903000 29908000 29033000 28042000 28206000 10 10 8 10 10 10 10 10 10 10 10 6424500 11410000 26898 10204000 9331000 16842000 9960900 9413200 8646100 8756300 9247200 5981700 10643000 556250 10594000 8961800 16581000 10030000 9926000 8874800 8578900 8901800 3 3 2 3 3 3 3 3 3 3 3 14914000 25769000 145530 25654000 15510000 15456000 13360000 19870000 20108000 19931000 20008000 13888000 24045000 1362400 26027000 14825000 16474000 13873000 19982000 20158000 19463000 19304000 7 7 6 7 7 7 7 7 7 7 7 2516400000 1406200000 1110200000 12710 235 11808 67253;67254;67255;67256;67257 81279;81280;81281;81282;81283;81284;81285;81286;81287;81288;81289 81282 11 LSGTVGVAAVTAGPGLTNTVTAVK Unmodified 2183.2161 0.21614737 8 A1L0T0 ILVBL Acetolactate synthase-like protein yes yes 0 0 0 0 By MS/MS 2 0 1 1 70.603 70.44 3 2.4946E-22 22639 20211116_3440_TMUAki_TMT10x_S_F2 141.7 125.58 3183300 5754700 98573 5210200 4362600 4325400 4233400 4364200 3509300 3954200 4633100 2964700 5367700 372300 5340500 4185700 4461900 4278500 4423000 3641600 3878800 4434600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3183300 5754700 98573 5210200 4362600 4325400 4233400 4364200 3509300 3954200 4633100 2964700 5367700 372300 5340500 4185700 4461900 4278500 4423000 3641600 3878800 4434600 2 2 2 2 2 2 2 2 2 2 2 343670000 0 343670000 12711 8 11809 67258 81290;81291 81291 2 LSGVMVPAPIQDLEALR Oxidation (M) 1823.9815 0.98151975 3073 Q9UBB4;Q9UBB4-2 ATXN10 Ataxin-10 yes no 0 0 1 0 By MS/MS By MS/MS 6 0 3 1 2 78.483 78.463 2;3 2.6389E-10 25131 20211116_3434_TMUAki_TMT10x_P_F6 124.38 107.44 5808400 9256800 153950 8169800 7139700 8179000 7229100 5811300 4274200 5807500 6678400 5409100 8633500 622290 8411500 6856000 8278500 7236600 6027900 4562900 5672100 6367900 2 2 1 2 2 2 2 2 2 2 2 2863500 4983100 0 4290900 2835800 5003300 3764300 2823500 2285400 3151400 3824500 2666000 4647100 215640 4436900 2741100 5004100 3724000 2990600 2444400 3064300 3641700 1 1 0 1 1 1 1 1 1 1 1 2944900 4273800 153950 3879000 4303800 3175800 3464700 2987800 1988800 2656100 2853800 2743100 3986400 406660 3974600 4114900 3274400 3512600 3037300 2118500 2607800 2726200 1 1 1 1 1 1 1 1 1 1 1 1948300000 661010000 1287300000 12712 3073 11810 67259;67260;67261 81292;81293 81292 3119 2 LSGVMVPAPIQDLEALR Unmodified 1807.9866 0.98660513 3073 Q9UBB4;Q9UBB4-2 ATXN10 Ataxin-10 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 79.372 79.41 2 1.801E-05 28011 20211116_3446_TMUAki_TMT10x_S_F7 96.469 77.375 10599000 14784000 3893.3 16041000 9707500 8634200 12072000 4496100 4381300 5480600 9387400 9867900 13799000 808050 16165000 9363700 9159800 11883000 4809600 4971400 5312000 8900700 2 2 1 2 2 2 2 2 2 2 2 3171000 4495800 0 4629100 2475800 3418900 2918700 1670600 1655700 1963500 2942600 2952000 4195600 191360 4695000 2381100 3518300 2898300 1795600 1785300 1905600 2798800 1 1 0 1 1 1 1 1 1 1 1 7427600 10288000 3893.3 11412000 7231700 5215200 9153300 2825500 2725600 3517000 6444800 6915800 9603700 616680 11470000 6982600 5641500 8985100 3014100 3186000 3406400 6101900 1 1 1 1 1 1 1 1 1 1 1 1669700000 736760000 932900000 12713 3073 11810 67262;67263 81294;81295 81295 2 LSHADLLDARLGMK Oxidation (M) 1554.8188 0.81881152 1957 Q5XKR4 OTP Homeobox protein orthopedia yes yes 0 0 1 1 By MS/MS 2 0 1 1 76.894 76.819 2 0.10173 26465 20211116_3429_TMUAki_TMT10x_P_F2 48.64 22.126 4731500 6799800 6205.7 7360500 4438000 9434000 4830000 4125400 4095200 4829900 5104200 4405500 6347000 393940 7500300 4265500 9363600 4856000 4483400 4234100 4688100 4892600 1 1 1 1 1 1 1 1 1 1 1 4731500 6799800 6205.7 7360500 4438000 9434000 4830000 4125400 4095200 4829900 5104200 4405500 6347000 393940 7500300 4265500 9363600 4856000 4483400 4234100 4688100 4892600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 943510000 943510000 0 12714 1957 11811 67264 81296 81296 2533 1 LSHEGPGSELPAGALYR Unmodified 1752.8795 0.87949752 1694 Q14203;Q14203-6;Q14203-3;Q14203-4;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 2 2 45.198 45.346 3 2.5284E-30 12447 20211116_3431_TMUAki_TMT10x_P_F4 170.95 154.7 3474900 5759900 50327 6328000 6274500 6442500 4510700 5244700 5273600 4627200 5107700 3235800 5376700 370000 6417200 5974800 6529200 4691200 5374400 5325700 4544600 4932400 2 2 1 2 2 2 2 2 2 2 2 2050900 3092100 0 3569300 4849700 5109300 3338800 3015000 3034600 2660000 2990800 1909600 2887100 205030 3630600 4611900 5063000 3456300 3160500 3098900 2612500 2886500 1 1 0 1 1 1 1 1 1 1 1 1424000 2667800 50327 2758800 1424800 1333200 1171800 2229700 2239000 1967200 2116900 1326300 2489700 164980 2786600 1362900 1466200 1234900 2213900 2226800 1932100 2045900 1 1 1 1 1 1 1 1 1 1 1 1186300000 657240000 529100000 12715 1694 11812 67265;67266;67267;67268 81297;81298;81299;81300 81297 4 LSHETVTIELK Unmodified 1268.6976 0.69761697 1353 P62314 SNRPD1 Small nuclear ribonucleoprotein Sm D1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 47.434 47.597 3 6.6827E-07 12582 20211116_3444_TMUAki_TMT10x_S_F5 131.12 104.33 14740000 24677000 358650 27781000 20000000 20374000 16081000 16718000 15909000 16262000 19469000 13727000 23038000 1624900 28011000 19100000 21131000 16511000 17168000 16319000 15901000 18671000 6 6 5 6 6 6 6 6 6 6 6 4750900 7950200 75964 8664400 9404600 10875000 5945800 5067000 5003700 4946000 6015000 4424100 7421100 529850 8821700 8935200 10812000 6182800 5441300 5167500 4835500 5771100 2 2 2 2 2 2 2 2 2 2 2 9988700 16727000 282680 19117000 10595000 9499200 10135000 11651000 10905000 11316000 13454000 9302500 15617000 1095100 19190000 10164000 10319000 10328000 11727000 11151000 11065000 12900000 4 4 3 4 4 4 4 4 4 4 4 1336300000 814480000 521830000 12716 1353 11813 67269;67270;67271;67272;67273 81301;81302;81303;81304;81305;81306 81304 6 LSHLKPSSEGLAIVTK Unmodified 1678.9618 0.96177059 602 P10155;P10155-5;P10155-3;P10155-4 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes no 0 0 0 1 By MS/MS 2 0 1 1 50.684 50.535 4 2.9809E-07 14530 20211116_3440_TMUAki_TMT10x_S_F2 108.34 93.182 1900200 3046100 58331 3764700 1489100 1790300 1572600 2386300 2796600 2522100 2749100 1769700 2845000 206140 3760400 1433500 1959000 1628700 2400200 2789800 2457600 2653400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1900200 3046100 58331 3764700 1489100 1790300 1572600 2386300 2796600 2522100 2749100 1769700 2845000 206140 3760400 1433500 1959000 1628700 2400200 2789800 2457600 2653400 1 1 1 1 1 1 1 1 1 1 1 429520000 0 429520000 12717 602 11814 67274 81307 81307 1 LSHVPPPLFPSAPATLASR Unmodified 1957.0785 0.078531678 151 O14979 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.866 1 3 2 2 60.137 60.114 3 0.0099096 18427 20211116_3431_TMUAki_TMT10x_P_F4 45.047 32.486 10225000 17289000 27715 17179000 13119000 16682000 14057000 10475000 9746100 10019000 13158000 9520900 16132000 911360 17525000 12605000 16885000 14076000 10950000 10225000 9803800 12587000 3 3 2 3 3 3 3 3 3 3 3 7796600 12631000 6427 13437000 10338000 14303000 11488000 7086700 6869900 7305700 9817000 7259400 11789000 685230 13664000 9941900 14356000 11450000 7576000 7295600 7126100 9378800 2 2 1 2 2 2 2 2 2 2 2 2428600 4657800 21288 3741500 2781200 2378300 2568800 3388700 2876200 2713200 3341100 2261500 4342800 226130 3861300 2662700 2529700 2626200 3374200 2929100 2677700 3208600 1 1 1 1 1 1 1 1 1 1 1 3014000000 1164800000 1849200000 12718 151 11815 67275;67276;67277;67278 81308;81309;81310 81308 3 LSIFDANESGFESYEALPQHK Unmodified 2381.1176 0.11755554 811 P26358;P26358-2;P26358-3 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 0 0 0 0 By MS/MS 6 0 1 1 73.345 73.261 3 5.3318E-09 23383 20211116_3445_TMUAki_TMT10x_S_F6 105.32 94.181 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12719 811 11816 67279 81311 81311 1 LSILYPATTGR Unmodified 1190.6659 0.66592292 859 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 1.15 2 2 2 3 4 5 60.103 59.908 2 2.317E-19 20093 20211116_3430_TMUAki_TMT10x_P_F3 235.66 181.05 57409000 95792000 713340 109270000 69144000 81853000 58644000 74419000 64767000 64911000 75276000 53456000 89434000 5194400 110110000 66052000 84910000 60224000 75755000 65970000 63496000 72290000 10 10 5 10 10 10 10 10 9 9 9 21733000 35535000 139830 39945000 39459000 51452000 29557000 28501000 27457000 26617000 29261000 20236000 33174000 2070500 40611000 37588000 51190000 30434000 30080000 28089000 26073000 28171000 4 4 2 4 4 4 4 4 4 4 4 35676000 60257000 573510 69322000 29685000 30401000 29087000 45918000 37309000 38295000 46014000 33220000 56260000 3123900 69497000 28465000 33720000 29790000 45675000 37881000 37424000 44119000 6 6 3 6 6 6 6 6 5 5 5 9421600000 4411600000 5010000000 12720 859 11817 67280;67281;67282;67283;67284;67285;67286;67287;67288 81312;81313;81314;81315;81316;81317;81318;81319;81320;81321;81322 81315 11 LSIMIEECGGLDKIEALQNHENESVYK Oxidation (M) 3134.49 0.49001532 1172 P52292 KPNA2 Importin subunit alpha-1 yes yes 0 0 1 1 By MS/MS 5 0 1 1 70.702 70.715 4 1.2225E-08 22073 20211116_3444_TMUAki_TMT10x_S_F5 87.485 64.431 2863100 5262900 21904 4178600 3724600 3799600 3552800 2997600 3188600 3354200 3515700 2666000 4906800 269850 4333800 3568300 3876100 3601400 3098900 3271400 3261200 3381400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2863100 5262900 21904 4178600 3724600 3799600 3552800 2997600 3188600 3354200 3515700 2666000 4906800 269850 4333800 3568300 3876100 3601400 3098900 3271400 3261200 3381400 1 1 1 1 1 1 1 1 1 1 1 554370000 0 554370000 12721 1172 11818 67289 81323 81323 1585 1 LSIPTYGLQCTR Unmodified 1407.718 0.71803484 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 2.42 1.85 4 4 3 1 6 6 59.672 59.434 2;3 7.6824E-24 19383 20211116_3429_TMUAki_TMT10x_P_F2 240.82 151.78 31746000 54780000 259810 57576000 42931000 51359000 33027000 41397000 38650000 36164000 42009000 29559000 51126000 2850700 58447000 40919000 52481000 34193000 42436000 39192000 35535000 40420000 12 12 7 12 12 12 12 12 12 12 12 19121000 31531000 167380 33788000 30288000 40917000 23709000 23745000 22460000 21060000 24571000 17803000 29430000 1764500 34417000 28878000 40858000 24354000 24928000 22979000 20679000 23638000 7 7 5 7 7 7 7 7 7 7 7 12625000 23250000 92430 23788000 12642000 10442000 9318500 17652000 16189000 15104000 17438000 11755000 21696000 1086200 24030000 12041000 11623000 9838600 17507000 16213000 14856000 16783000 5 5 2 5 5 5 5 5 5 5 5 5935400000 3716900000 2218500000 12722 1092 11819 67290;67291;67292;67293;67294;67295;67296;67297;67298;67299;67300;67301 81324;81325;81326;81327;81328;81329;81330;81331;81332;81333;81334;81335;81336;81337 81326 14 LSIQCYLSALDR Unmodified 1437.7286 0.72859953 1483 Q01581 HMGCS1 Hydroxymethylglutaryl-CoA synthase, cytoplasmic yes yes 0 0 0 0 By MS/MS 1 0 1 1 77.89 77.838 2 0.07334 27368 20211116_3439_TMUAki_TMT10x_S_F1 46.73 8.3731 4192200 7169800 30693 7107000 4782500 4700100 4580600 3250400 3510200 4202000 5156900 3903600 6689900 384430 7218700 4582500 4904000 4623700 3406400 3676300 4064700 4923700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4192200 7169800 30693 7107000 4782500 4700100 4580600 3250400 3510200 4202000 5156900 3903600 6689900 384430 7218700 4582500 4904000 4623700 3406400 3676300 4064700 4923700 1 1 1 1 1 1 1 1 1 1 1 326060000 0 326060000 12723 1483 11820 67302 81338 81338 1 LSISETYDLK Unmodified 1167.6023 0.60231961 45 CON__P34955 yes yes 0 0 0 0 By MS/MS By MS/MS 4.64 0.881 1 4 4 2 5 6 60.248 60.311 2;3 6.4933E-11 18074 20211116_3445_TMUAki_TMT10x_S_F6 206.43 124.01 + 100600000 148400000 937220 165770000 169100000 156200000 123210000 223440000 237030000 201340000 168930000 93675000 138540000 10014000 167750000 161030000 161230000 130900000 223130000 233740000 197550000 165070000 14 14 8 14 14 14 14 14 14 14 14 45171000 67537000 158660 76098000 96968000 110940000 72245000 94472000 101170000 86642000 73637000 42059000 63051000 4548900 77549000 92361000 110500000 75470000 96649000 100680000 84942000 71887000 6 6 3 6 6 6 6 6 6 6 6 55430000 80867000 778560 89676000 72133000 45265000 50964000 128970000 135860000 114700000 95290000 51616000 75491000 5465600 90198000 68673000 50733000 55430000 126480000 133060000 112610000 93178000 8 8 5 8 8 8 8 8 8 8 8 9528600000 4503200000 5025400000 12724 45 11821 67303;67304;67305;67306;67307;67308;67309;67310;67311;67312;67313 81339;81340;81341;81342;81343;81344;81345;81346;81347;81348;81349;81350;81351;81352;81353 81353 15 LSIVPVRR Unmodified 938.60253 0.6025348 687 P15880 RPS2 40S ribosomal protein S2 yes yes 0 0 0 1 By MS/MS By MS/MS 3.89 1.29 2 1 3 2 1 4 5 35.421 35.402 3 0.0006096 9608 20211116_3433_TMUAki_TMT10x_P_F5 128.61 30.149 3434600 5749700 10989 5577300 6021700 5330300 3777900 3990900 3651600 3545900 4585300 3197900 5364400 319130 5698300 5717400 5415300 3945500 4111900 3753600 3481500 4394400 8 8 5 8 8 8 8 8 8 8 8 1754600 2835300 9107.9 2726300 4156600 3915600 2115800 2014800 1847400 1761800 2304900 1633800 2645200 187600 2806800 3934800 3872900 2244500 2136900 1907400 1731100 2209300 3 3 3 3 3 3 3 3 3 3 3 1680000 2914500 1881.4 2851000 1865100 1414700 1662200 1976100 1804200 1784100 2280400 1564200 2719300 131530 2891500 1782600 1542400 1701000 1975100 1846100 1750400 2185100 5 5 2 5 5 5 5 5 5 5 5 792020000 458570000 333450000 12725 687 11822 67314;67315;67316;67317;67318;67319;67320;67321;67322 81354;81355;81356;81357;81358;81359;81360;81361;81362 81355 9 LSKDPNIVIAK Unmodified 1196.7129 0.71287311 868 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 1 By MS/MS By MS/MS 5 2.83 1 2 1 2 49.499 49.781 3 0.00045718 15935 20211116_3439_TMUAki_TMT10x_S_F1 84.169 57.071 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12726 868 11823 67323;67324;67325 81363;81364;81365 81364 3 LSKEDIER Unmodified 988.51892 0.51892433 615 P11142 HSPA8 Heat shock cognate 71 kDa protein yes yes 0 0 0 1 By MS/MS By MS/MS 4.25 0.829 1 1 2 2 2 35.117 35.098 3 0.00369 8467 20211116_3431_TMUAki_TMT10x_P_F4 90.827 23.123 19856000 33854000 178970 26446000 25872000 30775000 23313000 17313000 18679000 17421000 24312000 18489000 31562000 1894800 27567000 24754000 30782000 23637000 18285000 19405000 17009000 23278000 6 6 5 6 6 6 6 6 6 6 6 12530000 20958000 143810 16423000 17008000 23020000 13166000 11544000 12392000 11404000 15694000 11668000 19539000 1235600 17173000 16220000 22786000 13532000 12312000 12758000 11143000 15038000 3 3 3 3 3 3 3 3 3 3 3 7325700 12896000 35164 10023000 8864800 7755400 10147000 5769000 6287200 6016800 8617500 6821200 12023000 659210 10394000 8534200 7995900 10106000 5973200 6647700 5866100 8240900 3 3 2 3 3 3 3 3 3 3 3 659860000 460820000 199050000 12727 615 11824 67326;67327;67328;67329 81366;81367;81368;81369;81370;81371 81366 6 LSKEEIER Unmodified 1002.5346 0.53457439 596 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B no no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 34.426 34.319 3 0.0062259 10721 20211116_3441_TMUAki_TMT10x_S_F3 80.706 34.705 4928900 8174600 31817 6937200 7981800 8930000 6699100 5570300 6197900 5303400 7039200 4589400 7623100 469380 7194200 7622200 8898900 6846800 5825100 6357000 5190600 6764500 4 4 3 4 4 4 4 4 4 4 4 3613800 5957000 19363 4959100 6093300 7291400 4764500 4157100 4593900 3901500 5199900 3364900 5554800 340720 5164500 5809500 7213700 4897100 4377200 4702500 3820900 4997400 2 2 1 2 2 2 2 2 2 2 2 1315100 2217600 12454 1978000 1888500 1638600 1934600 1413200 1603900 1402000 1839300 1224600 2068300 128670 2029800 1812700 1685200 1949700 1447900 1654500 1369700 1767000 2 2 2 2 2 2 2 2 2 2 2 166550000 135050000 31504000 12728 596 11825 67330;67331 81372;81373;81374;81375 81374 4 LSKNEAPEGNLGDFAEFQR Unmodified 2121.0127 0.012696536 3159 Q9UKN8 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.707 1 2 1 1 3 57.977 58.098 3 1.1531E-08 17914 20211116_3433_TMUAki_TMT10x_P_F5 115.42 105.89 6844300 11954000 24069 10807000 8761600 11799000 7576400 10715000 9718600 8860700 9901900 6372900 11151000 614990 11121000 8372600 11934000 7813300 10894000 9799800 8730200 9546300 2 2 1 2 2 2 2 2 2 2 2 2978000 5049200 24069 4294300 4578000 8116700 4341000 4794600 4194300 3972700 4416100 2773000 4708600 291740 4491300 4385100 7958300 4411100 5017800 4281200 3913800 4253200 1 1 1 1 1 1 1 1 1 1 1 3866300 6905300 0 6512900 4183600 3681800 3235400 5920700 5524400 4888000 5485800 3599900 6441900 323250 6629700 3987500 3975800 3402200 5875800 5518500 4816400 5293100 1 1 0 1 1 1 1 1 1 1 1 1025400000 334750000 690680000 12729 3159 11826 67332;67333;67334;67335 81376;81377;81378 81376 3 LSKNEVLMVNIGSLSTGGR Oxidation (M) 1990.0517 0.05172458 993 P41091;Q2VIR3;Q2VIR3-2 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 0 0 1 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 62.504 62.195 3 3.7773E-06 22095 20211116_3441_TMUAki_TMT10x_S_F3 92.492 83.21 25058000 43746000 145360 35836000 34612000 50487000 29634000 44416000 42029000 40533000 37668000 23332000 40790000 2245800 37336000 33065000 50393000 30703000 45349000 42060000 39747000 36472000 6 6 2 6 6 6 6 6 6 6 6 13302000 23647000 145360 19367000 19268000 35821000 17666000 23889000 22334000 20712000 19830000 12387000 22049000 1300500 20305000 18442000 35209000 18148000 24795000 22428000 20360000 19207000 3 3 2 3 3 3 3 3 3 3 3 11756000 20099000 0 16469000 15345000 14667000 11968000 20527000 19695000 19821000 17838000 10945000 18741000 945350 17031000 14623000 15184000 12555000 20554000 19633000 19387000 17265000 3 3 0 3 3 3 3 3 3 3 3 3450700000 1717300000 1733400000 12730 993 11827 67336;67337;67338;67339 81379;81380;81381;81382;81383;81384 81384 1279 6 LSKNEVLMVNIGSLSTGGR Unmodified 1974.0568 0.056809958 993 P41091;Q2VIR3;Q2VIR3-2 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 0 0 0 1 By MS/MS 4 0 1 1 66.692 66.779 3 5.5416E-07 21257 20211116_3431_TMUAki_TMT10x_P_F4 90.464 75.903 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12731 993 11827 67340 81385 81385 1 LSKPCCYIFPGGR Unmodified 1553.7483 0.74828911 1057;1435 P78559;P78559-2;P46821 MAP1A;MAP1B Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2;Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 no no 0 0 0 1 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 52.754 52.843 3 3.2016E-09 16009 20211116_3442_TMUAki_TMT10x_S_F4 130.07 117.69 54501000 94455000 205260 94483000 80878000 94867000 57511000 79491000 56975000 71592000 73793000 50742000 88137000 4507000 96392000 76938000 96275000 59541000 81360000 58583000 70246000 70665000 5 5 3 5 5 5 5 5 5 5 5 26812000 45998000 163720 46661000 56876000 71267000 38052000 38906000 27964000 34339000 35826000 24966000 42923000 2787300 47923000 54072000 70357000 39269000 41053000 29169000 33726000 34316000 3 3 2 3 3 3 3 3 3 3 3 27688000 48457000 41541 47822000 24002000 23600000 19459000 40585000 29011000 37253000 37967000 25776000 45214000 1719700 48469000 22866000 25918000 20271000 40307000 29414000 36520000 36348000 2 2 1 2 2 2 2 2 2 2 2 8486700000 5100500000 3386100000 12732 1435;1057 11828 67341;67342;67343;67344;67345 81386;81387;81388;81389;81390 81389 5 LSLDGQNIYNACCTLR Unmodified 1896.8822 0.88221641 818 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.6 1.08 3 4 4 4 7 8 61.613 61.833 2;3 1.2046E-107 18682 20211116_3445_TMUAki_TMT10x_S_F6 364.17 326.98 122510000 224840000 1258800 217760000 152010000 206320000 143970000 147610000 110900000 146650000 163130000 114070000 209770000 9859900 222480000 145540000 209570000 145430000 153020000 116120000 143270000 155750000 17 17 8 17 17 17 17 17 17 17 17 59629000 114460000 1099200 112690000 81037000 151050000 88939000 77637000 58944000 77516000 83128000 55525000 106790000 5876900 115660000 77942000 149860000 88872000 82637000 62136000 75712000 79442000 9 9 6 9 9 9 9 9 9 9 9 62885000 110380000 159570 105080000 70977000 55266000 55033000 69975000 51954000 69136000 80004000 58545000 102980000 3983000 106820000 67601000 59704000 56561000 70378000 53985000 67556000 76308000 8 8 2 8 8 8 8 8 8 8 8 52050000000 28859000000 23191000000 12733 818 11829 67346;67347;67348;67349;67350;67351;67352;67353;67354;67355;67356;67357;67358;67359;67360 81391;81392;81393;81394;81395;81396;81397;81398;81399;81400;81401;81402;81403;81404;81405;81406;81407;81408 81402 18 LSLEADR Unmodified 802.41848 0.418482 3196 Q9UNN5;Q9UNN5-2 FAF1 FAS-associated factor 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 35.684 35.675 2 0.064368 9688 20211116_3430_TMUAki_TMT10x_P_F3 62.464 7.9149 102380 140020 6270.3 138520 143510 180750 120080 77415 107110 95468 111050 95373 130640 14908 142050 137390 179210 122630 84466 109670 92495 107000 1 1 1 1 1 1 1 1 1 1 1 102380 140020 6270.3 138520 143510 180750 120080 77415 107110 95468 111050 95373 130640 14908 142050 137390 179210 122630 84466 109670 92495 107000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9472300 9472300 0 12734 3196 11830 67361 81409 81409 1 LSLEFPSGYPYNAPTVK Unmodified 1881.9513 0.95126548 108 O00762;O00762-2;O00762-3 UBE2C Ubiquitin-conjugating enzyme E2 C yes no 0 0 0 0 By MS/MS By MS/MS 4.62 3.39 3 1 4 5 3 75.841 75.804 2;3 3.3711E-43 24142 20211116_3447_TMUAki_TMT10x_S_F8 233.37 178.03 63489000 101090000 710430 100450000 43704000 58165000 53010000 22679000 23687000 26573000 52496000 59118000 94328000 5411200 101890000 42167000 61066000 52376000 24966000 26403000 25792000 49749000 13 13 7 13 13 13 13 13 13 13 13 44167000 69480000 392200 69278000 26222000 39866000 31302000 15483000 15881000 17957000 35236000 41125000 64832000 3585600 70249000 25282000 41879000 31008000 17047000 17518000 17436000 33391000 8 8 4 8 8 8 8 8 8 8 8 19322000 31613000 318230 31176000 17482000 18299000 21708000 7195900 7806000 8615800 17261000 17993000 29497000 1825600 31643000 16885000 19187000 21368000 7919100 8885100 8356100 16358000 5 5 3 5 5 5 5 5 5 5 5 9775100000 5426600000 4348500000 12735 108 11831 67362;67363;67364;67365;67366;67367;67368;67369 81410;81411;81412;81413;81414;81415;81416;81417;81418;81419;81420;81421;81422;81423 81423 14 LSLPQNETVADTTLTK Unmodified 1729.9098 0.90979459 2861 Q9HC35;Q9HC35-2 EML4 Echinoderm microtubule-associated protein-like 4 yes no 0 0 0 0 By MS/MS 5 0 1 1 61.232 61.399 3 0.00021216 19290 20211116_3433_TMUAki_TMT10x_P_F5 72.819 49.94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12736 2861 11832 67370 81424 81424 1 LSLQNCCLTGAGCGVLSSTLR Unmodified 2266.0868 0.086806232 651 P13489 RNH1 Ribonuclease inhibitor yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 69.801 69.445 3 8.9742E-45 25030 20211116_3441_TMUAki_TMT10x_S_F3 212.55 196.96 9038900 15525000 133.17 10618000 8969500 13786000 9664200 5142100 4820600 6749900 10074000 8416100 14468000 104520 11226000 8617800 13655000 9616600 5712500 5302500 6526000 9555100 2 2 1 2 2 2 2 2 2 2 2 7820100 13520000 0 8801000 7511800 12516000 8259300 3816300 3658300 5540900 8651600 7281300 12598000 0 9367400 7221400 12326000 8196200 4370800 4100300 5340500 8191300 1 1 0 1 1 1 1 1 1 1 1 1218800 2004600 133.17 1817400 1457700 1269900 1404900 1325800 1162200 1209000 1422100 1134800 1869800 104520 1859100 1396400 1328700 1420300 1341600 1202200 1185500 1363800 1 1 1 1 1 1 1 1 1 1 1 2797600000 1103600000 1694000000 12737 651 11833 67371;67372 81425;81426 81426 2 LSLSNAISTALPLTQLR Unmodified 1797.036 0.035998161 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.43 0.495 4 3 4 3 79.434 79.437 2;3 1.7857E-45 25539 20211116_3434_TMUAki_TMT10x_P_F6 212.03 168.72 6545700 10011000 55737 9880900 7271100 9777900 7537000 5958700 5808400 6749100 7123500 6094200 9340700 484140 10088000 6974100 9881600 7577700 6274800 6031300 6558900 6831100 4 4 2 4 4 4 4 4 4 4 4 3585100 5747100 55737 5614400 3720100 6623600 3970300 3379000 3443000 3962300 3968000 3338500 5362200 351070 5752000 3576700 6612500 3997800 3616700 3544300 3845800 3811500 2 2 2 2 2 2 2 2 2 2 2 2960700 4263700 0 4266500 3551000 3154300 3566700 2579800 2365400 2786700 3155500 2755700 3978500 133070 4335700 3397400 3269100 3579900 2658100 2487000 2713200 3019600 2 2 0 2 2 2 2 2 2 2 2 3610900000 1652200000 1958700000 12738 1695 11834 67373;67374;67375;67376;67377;67378;67379 81427;81428;81429;81430;81431;81432 81430 6 LSLTQSDISHIGSMR Oxidation (M) 1659.825 0.82501911 3051 Q9P0M6 H2AFY2 Core histone macro-H2A.2 yes yes 0 0 1 0 By MS/MS 7 0 1 1 47.637 48.12 3 0.00025351 15031 20211116_3446_TMUAki_TMT10x_S_F7 79.346 55.97 1749700 2925500 1402 3262000 1746700 1554700 1560500 2409400 2424900 2125400 2501100 1629100 2731000 146320 3278500 1670300 1708400 1619400 2398100 2431800 2087500 2410400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1749700 2925500 1402 3262000 1746700 1554700 1560500 2409400 2424900 2125400 2501100 1629100 2731000 146320 3278500 1670300 1708400 1619400 2398100 2431800 2087500 2410400 1 1 1 1 1 1 1 1 1 1 1 136190000 0 136190000 12739 3051 11835 67380 81433 81433 3096 1 LSLVDLAGSER Unmodified 1158.6245 0.62445203 2910 Q9NQT8 KIF13B Kinesin-like protein KIF13B yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 61.519 61.56 2 2.7315E-05 19585 20211116_3442_TMUAki_TMT10x_S_F4 106.37 0 21213000 35938000 275170 34252000 23908000 28218000 22677000 20607000 17968000 19630000 25259000 19753000 33528000 2023900 34972000 22908000 28948000 22921000 21307000 18744000 19211000 24140000 3 3 2 3 3 3 3 3 3 3 3 8541900 14017000 178450 13413000 10304000 15922000 10678000 7778100 7114600 7686400 9882100 7954700 13077000 899180 13764000 9900600 15882000 10702000 8316500 7492100 7510700 9447200 1 1 1 1 1 1 1 1 1 1 1 12671000 21921000 96723 20839000 13604000 12296000 11999000 12829000 10853000 11943000 15377000 11799000 20451000 1124700 21208000 13008000 13066000 12219000 12990000 11252000 11701000 14693000 2 2 1 2 2 2 2 2 2 2 2 1062300000 359620000 702710000 12740 2910 11836 67381;67382;67383;67384 81434;81435;81436;81437 81436 4 LSMKPEPLFR Unmodified 1216.6638 0.66381443 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 53.833 53.633 3 0.0002095 17069 20211116_3429_TMUAki_TMT10x_P_F2 110.66 84.532 35030000 52662000 245900 65983000 56852000 43675000 41097000 19340000 13813000 19848000 39443000 32618000 49189000 3437800 66039000 54131000 45322000 41665000 20907000 16156000 19363000 37256000 5 5 4 5 5 5 5 5 5 5 5 22021000 31951000 203320 40631000 45381000 36762000 31687000 12252000 8726800 12511000 24766000 20505000 29846000 2341100 40779000 43181000 37139000 32147000 13702000 10452000 12208000 23394000 3 3 2 3 3 3 3 3 3 3 3 13009000 20710000 42574 25353000 11471000 6912900 9409600 7087500 5086500 7336900 14677000 12113000 19342000 1096700 25260000 10949000 8183700 9518500 7204800 5704100 7155300 13862000 2 2 2 2 2 2 2 2 2 2 2 2795400000 1748700000 1046700000 12741 1057 11837 67385;67386;67387;67388;67389;67390 81438;81439;81440;81441;81442;81443 81439 6 LSMKPEPLFR Oxidation (M) 1232.6587 0.65872905 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 1 1 By MS/MS By MS/MS 2 0 2 1 1 45.632 45.472 3 0.064717 13750 20211116_3429_TMUAki_TMT10x_P_F2 43.68 23.893 4176200 6321700 1398.4 7807900 7196400 6953500 5080000 5404100 5488300 4606500 5780800 3888400 5904400 383740 7847500 6846700 7101700 5276100 5548900 5575900 4531800 5567400 2 2 1 2 2 2 2 2 2 2 2 2578600 3721200 0 4741500 5589200 5638800 3607300 3045000 3068400 2584600 3405400 2400800 3476100 249850 4778500 5308900 5630800 3746000 3213000 3157100 2543200 3274600 1 1 0 1 1 1 1 1 1 1 1 1597600 2600500 1398.4 3066300 1607200 1314700 1472700 2359200 2419900 2021900 2375400 1487600 2428200 133890 3069100 1537800 1470900 1530100 2335800 2418800 1988600 2292800 1 1 1 1 1 1 1 1 1 1 1 507460000 255810000 251650000 12742 1057 11837 67391;67392 81444;81445 81444 1375 2 LSNIFVIGK Unmodified 989.59097 0.59096706 1362 P62701 RPS4X 40S ribosomal protein S4, X isoform yes yes 0 0 0 0 By MS/MS By MS/MS 3.73 1.43 2 2 7 8 6 1 18 8 60.517 60.462 2;3 5.4916E-06 24115 20211116_3442_TMUAki_TMT10x_S_F4 182.98 123.34 164620000 262140000 1643600 277320000 198050000 246210000 171830000 193790000 188480000 179810000 204170000 153280000 244660000 14384000 281380000 189260000 251560000 176180000 199260000 191570000 176190000 196470000 23 23 14 23 23 23 23 23 23 23 23 90688000 140060000 1338400 145190000 127740000 186060000 107380000 109510000 105230000 100150000 108260000 84445000 130710000 8743900 148370000 122020000 185300000 109920000 114930000 107260000 98202000 104340000 16 16 11 16 16 16 16 16 16 16 16 73928000 122080000 305190 132130000 70307000 60154000 64450000 84272000 83246000 79658000 95916000 68830000 113950000 5640100 133010000 67238000 66262000 66262000 84326000 84315000 77988000 92134000 7 7 3 7 7 7 7 7 7 7 7 37597000000 20253000000 17344000000 12743 1362 11838 67393;67394;67395;67396;67397;67398;67399;67400;67401;67402;67403;67404;67405;67406;67407;67408;67409;67410;67411;67412;67413;67414;67415;67416;67417;67418 81446;81447;81448;81449;81450;81451;81452;81453;81454;81455;81456;81457;81458;81459;81460;81461;81462;81463;81464;81465;81466;81467;81468;81469;81470;81471;81472;81473;81474;81475;81476 81473 31 LSNKVEAIDVEEAKR Unmodified 1699.9105 0.9104633 911 P33991 MCM4 DNA replication licensing factor MCM4 yes yes 0 0 0 2 By MS/MS By matching 5.67 0.471 1 2 2 1 45.924 46.052 4 4.9453E-05 11821 20211116_3434_TMUAki_TMT10x_P_F6 97.095 76.432 6628500 11298000 107300 10922000 18569000 20596000 10460000 12892000 13521000 10273000 11382000 6172600 10541000 816780 11314000 17607000 20212000 11129000 13418000 13545000 10141000 11046000 3 3 3 3 3 3 3 3 3 3 3 6628500 11298000 107300 10922000 18569000 20596000 10460000 12892000 13521000 10273000 11382000 6172600 10541000 816780 11314000 17607000 20212000 11129000 13418000 13545000 10141000 11046000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 904340000 599340000 304990000 12744 911 11839 67419;67420;67421 81477;81478;81479 81477 3 LSNLALVKPEK Unmodified 1210.7285 0.72852317 127 O14737;O14737-2 PDCD5 Programmed cell death protein 5 yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 54.608 54.511 3 0.00011703 15880 20211116_3428_TMUAki_TMT10x_P_F1 86.944 68.134 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12745 127 11840 67422;67423 81480;81481 81480 2 LSNRPAFMPSEGK Unmodified 1432.7133 0.71328381 235 O43707;O43707-2 ACTN4 Alpha-actinin-4 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 42.771 42.77 3 0.0051146 11107 20211116_3428_TMUAki_TMT10x_P_F1 62.044 0 3332400 4850200 0 7321900 10325000 7435700 5038300 3348000 3501900 3126300 4535800 3102400 4535000 329650 7296700 9764100 7476100 5339400 3603700 3666500 3062400 4343500 2 2 0 2 2 2 2 2 2 2 2 3332400 4850200 0 7321900 10325000 7435700 5038300 3348000 3501900 3126300 4535800 3102400 4535000 329650 7296700 9764100 7476100 5339400 3603700 3666500 3062400 4343500 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 225220000 175140000 50078000 12746 235 11841 67424;67425;67426;67427 81482;81483;81484 81482 3 LSNRPAFMPSEGR Unmodified 1460.7194 0.71943182 644 P12814;P12814-2;P12814-3;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 1 By MS/MS 8 0 1 1 37.324 37.604 3 1.4678E-12 9114 20211116_3436_TMUAki_TMT10x_P_F8 158.93 133.58 484910 721100 19115 910770 1437700 1116900 756630 532330 524540 471110 695830 451640 673570 71362 918820 1362600 1111900 795910 568900 549860 462630 665940 2 2 2 2 2 2 2 2 2 2 2 484910 721100 19115 910770 1437700 1116900 756630 532330 524540 471110 695830 451640 673570 71362 918820 1362600 1111900 795910 568900 549860 462630 665940 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24127000 24127000 0 12747 644 11842 67428 81485;81486 81486 2 LSPGGYFIGTTPNSFELIR Unmodified 2068.0629 0.062941193 197 O43148;O43148-2 RNMT mRNA cap guanine-N7 methyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 2 0 4 2 2 78.5 78.469 2;3 8.2024E-32 27131 20211116_3429_TMUAki_TMT10x_P_F2 196.48 173.24 10510000 17359000 0 16496000 12014000 15798000 12868000 10482000 10193000 11836000 12606000 9784600 16194000 725590 16879000 11530000 16018000 12925000 10966000 10572000 11504000 12085000 4 4 0 4 4 4 4 4 4 4 4 5689900 8933600 0 8306400 5406200 10573000 6380700 5046600 5308400 6590800 6563400 5297300 8333600 395190 8552100 5203500 10507000 6388100 5456200 5491900 6373300 6292700 2 2 0 2 2 2 2 2 2 2 2 4820200 8425300 0 8189300 6607600 5225600 6487700 5435600 4884400 5245100 6042200 4487300 7860800 330400 8326800 6326500 5511000 6537400 5510200 5080300 5130500 5792800 2 2 0 2 2 2 2 2 2 2 2 4791800000 2728800000 2062900000 12748 197 11843 67429;67430;67431;67432 81487;81488;81489;81490 81487 4 LSPIFRDFLNR Unmodified 1376.7565 0.75646926 1606 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 68.984 68.986 3 5.0521E-16 22165 20211116_3431_TMUAki_TMT10x_P_F4 205.46 165.84 15362000 24002000 69161 23854000 17834000 17991000 15527000 12318000 9903000 12182000 16498000 14304000 22396000 1346600 24258000 17044000 18562000 15696000 12806000 10555000 11903000 15711000 6 6 3 6 6 6 6 6 6 6 6 7260900 11081000 0 11003000 6835800 11308000 7445000 5748500 4853400 5783300 7662000 6760400 10339000 569980 11235000 6568100 11376000 7439700 6126300 5150600 5646800 7304300 3 3 0 3 3 3 3 3 3 3 3 8101200 12922000 69161 12851000 10998000 6683200 8081800 6569100 5049600 6398900 8835800 7543600 12057000 776670 13023000 10476000 7186300 8256300 6679700 5404200 6256500 8406400 3 3 3 3 3 3 3 3 3 3 3 2104200000 1054000000 1050200000 12749 1606 11844 67433;67434;67435;67436 81491;81492;81493;81494;81495;81496 81491 6 LSPKAEEVATFFAK Unmodified 1536.8188 0.81879474 624 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 0 1 By MS/MS 1 0 1 1 71.117 70.968 3 1.4709E-09 24573 20211116_3439_TMUAki_TMT10x_S_F1 109.35 84.417 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12750 624 11845 67437 81497 81497 1 LSPPYSSPQEFAQDVGR Unmodified 1876.8955 0.89554151 1615 Q13263;Q13263-2 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 0 By MS/MS By MS/MS 5.6 1.08 3 4 4 4 8 7 62.55 62.767 2;3 1.5949E-69 19716 20211116_3433_TMUAki_TMT10x_P_F5 305.74 283.02 61707000 104250000 832040 98566000 77700000 105660000 73922000 82071000 73711000 77487000 83904000 57458000 97251000 5719900 101060000 74432000 106670000 75173000 84498000 75360000 75867000 80624000 25 25 12 25 25 25 25 25 25 25 25 34890000 58067000 324150 54203000 42926000 77003000 45292000 45260000 41304000 43135000 45982000 32486000 54168000 3061600 55910000 41223000 76326000 45694000 47556000 42360000 42216000 44213000 14 14 6 14 14 14 14 14 14 14 14 26817000 46179000 507890 44363000 34774000 28659000 28630000 36811000 32407000 34351000 37922000 24972000 43083000 2658300 45151000 33210000 30348000 29479000 36942000 32999000 33651000 36411000 11 11 6 11 11 11 11 11 11 11 11 23010000000 12472000000 10537000000 12751 1615 11846 67438;67439;67440;67441;67442;67443;67444;67445;67446;67447;67448;67449;67450;67451;67452 81498;81499;81500;81501;81502;81503;81504;81505;81506;81507;81508;81509;81510;81511;81512;81513;81514;81515;81516;81517;81518;81519;81520;81521;81522;81523 81503 26 LSPQAVNSIAKR Unmodified 1282.7357 0.73573382 877 P30626;P30626-2;P30626-3 SRI Sorcin yes no 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 41.441 41.312 3 2.3029E-08 13610 20211116_3441_TMUAki_TMT10x_S_F3 140.33 100.75 772630 1263100 726.05 1470600 1120500 791620 876130 1424200 1633000 1170000 1456400 719400 1179400 69605 1475400 1068300 862540 924900 1408500 1621900 1153100 1410400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 772630 1263100 726.05 1470600 1120500 791620 876130 1424200 1633000 1170000 1456400 719400 1179400 69605 1475400 1068300 862540 924900 1408500 1621900 1153100 1410400 1 1 1 1 1 1 1 1 1 1 1 122860000 0 122860000 12752 877 11847 67453;67454 81524 81524 1 LSPSPLPVALGSGPGPGPGPQPLK Unmodified 2219.2314 0.2314035 136 O14813 PHOX2A Paired mesoderm homeobox protein 2A yes yes 0 0 0 0 By MS/MS By MS/MS 2.75 0.433 1 3 2 2 73.796 73.584 3;4 2.4469E-29 26703 20211116_3441_TMUAki_TMT10x_S_F3 167.16 149.06 10069000 17581000 59278 14770000 12873000 17315000 12426000 13241000 11384000 12240000 14337000 9375500 16395000 708690 15305000 12333000 17391000 12596000 13638000 11732000 11995000 13739000 5 5 2 5 5 5 5 5 5 5 5 5187700 9719000 59278 8142700 6567300 12866000 7311000 7260600 6013300 6170600 7958400 4830700 9063000 320370 8488800 6319300 12689000 7336800 7632300 6243300 6071500 7616900 3 3 2 3 3 3 3 3 3 3 3 4881300 7862400 0 6627700 6305500 4449400 5115500 5980400 5370800 6069300 6378400 4544700 7331800 388320 6816000 6013700 4701500 5259000 6005800 5488400 5923900 6121800 2 2 0 2 2 2 2 2 2 2 2 3583200000 1704400000 1878800000 12753 136 11848 67455;67456;67457;67458 81525;81526;81527;81528;81529 81528 5 LSPVPVPR Unmodified 863.52289 0.52288749 3158 Q9UKM9;Q9UKM9-2 RALY RNA-binding protein Raly yes no 0 0 0 0 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 42.887 43.099 2 0.00043338 11250 20211116_3436_TMUAki_TMT10x_P_F8 147.83 120.31 10861000 17430000 17519 17738000 15011000 15450000 11607000 15386000 15006000 14311000 15638000 10113000 16265000 922340 18039000 14305000 15879000 12056000 15615000 15140000 14021000 15066000 7 7 3 7 7 7 7 7 7 7 7 3888300 6113600 1615.7 6108400 7909000 9111700 5206900 5880900 5748200 5349600 5736500 3620200 5704600 348250 6276900 7513700 9024500 5439600 6126400 5823700 5246600 5534100 2 2 1 2 2 2 2 2 2 2 2 6973100 11316000 15903 11629000 7101800 6338500 6399800 9505100 9258200 8961500 9901800 6492600 10560000 574080 11762000 6791500 6854700 6616800 9488100 9316400 8774700 9532000 5 5 2 5 5 5 5 5 5 5 5 1574000000 755500000 818510000 12754 3158 11849 67459;67460;67461;67462;67463;67464 81530;81531;81532;81533;81534;81535;81536;81537 81532 8 LSPVTACAGQTLQFK Unmodified 1619.8341 0.83412723 2221 Q8NBF2;Q8NBF2-2 NHLRC2 NHL repeat-containing protein 2 yes no 0 0 0 0 By MS/MS 2 0 1 1 62.842 62.605 3 3.3936E-14 19428 20211116_3440_TMUAki_TMT10x_S_F2 141.87 111.67 5160900 9372000 32833 9514500 6149400 6048200 5840000 8349700 6872400 7202100 8136500 4805600 8745600 472320 9644400 5890500 6427000 5971900 8338900 6991200 7081200 7809800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5160900 9372000 32833 9514500 6149400 6048200 5840000 8349700 6872400 7202100 8136500 4805600 8745600 472320 9644400 5890500 6427000 5971900 8338900 6991200 7081200 7809800 2 2 2 2 2 2 2 2 2 2 2 578790000 0 578790000 12755 2221 11850 67465 81538;81539 81539 2 LSPWIRPDSK Unmodified 1197.6506 0.6506072 128 O14744;O14744-2;O14744-4 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 49.112 48.923 3 3.3576E-05 13862 20211116_3440_TMUAki_TMT10x_S_F2 130.1 94.433 6373900 10414000 92617 13971000 15274000 10429000 9406400 5284300 5147000 5744300 9194000 5935400 9730800 739410 13948000 14504000 10727000 9716300 5646100 5566100 5591200 8743800 2 2 2 2 2 2 2 2 2 2 2 3697400 5897100 30904 7950600 13303000 8574300 7206600 2991800 2929900 3286200 5219200 3442900 5510300 469870 7975200 12604000 8571000 7496300 3332400 3249000 3197300 4963900 1 1 1 1 1 1 1 1 1 1 1 2676500 4517000 61714 6020000 1971300 1854800 2199900 2292500 2217100 2458100 3974800 2492500 4220500 269540 5972900 1899700 2156300 2220000 2313700 2317100 2393900 3779900 1 1 1 1 1 1 1 1 1 1 1 839370000 614750000 224630000 12756 128 11851 67466;67467 81540;81541 81541 2 LSQELEYLTEDVKR Unmodified 1721.8836 0.88357984 641 P12270;P12270-2 TPR Nucleoprotein TPR yes no 0 0 0 1 By MS/MS 2 0 1 1 72.602 72.378 3 2.3538E-09 24730 20211116_3429_TMUAki_TMT10x_P_F2 131.95 93.648 4281800 7757600 0 5430200 5733500 16017000 7458700 12331000 10090000 9738600 7803000 3986500 7230000 338440 5862400 5538500 15581000 7556900 12646000 10068000 9618000 7598000 2 2 0 2 2 2 2 2 2 2 2 4281800 7757600 0 5430200 5733500 16017000 7458700 12331000 10090000 9738600 7803000 3986500 7230000 338440 5862400 5538500 15581000 7556900 12646000 10068000 9618000 7598000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 631260000 631260000 0 12757 641 11852 67468 81542;81543 81543 2 LSQERPGVLLNQFPCENLLTVK Unmodified 2554.3577 0.35774301 1688 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes yes 0 0 0 1 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 74.68 74.617 3;4 1.8518E-19 26078 20211116_3439_TMUAki_TMT10x_S_F1 146.6 126.88 17343000 29314000 178300 29084000 18578000 22128000 21048000 15359000 13781000 17756000 21282000 16149000 27352000 1597600 29582000 17885000 22820000 20996000 16030000 14604000 17243000 20298000 6 6 4 6 6 6 6 6 6 6 6 6770700 10548000 93135 10954000 5914600 11015000 7849100 5409300 5216000 6452000 8037800 6304900 9844100 636150 11147000 5725400 11092000 7779000 5813900 5521800 6258400 7666400 2 2 2 2 2 2 2 2 2 2 2 10572000 18766000 85170 18130000 12664000 11113000 13199000 9950200 8564600 11304000 13244000 9844000 17508000 961400 18435000 12160000 11728000 13217000 10216000 9081800 10984000 12631000 4 4 2 4 4 4 4 4 4 4 4 2716100000 993840000 1722200000 12758 1688 11853 67469;67470;67471;67472 81544;81545;81546;81547;81548;81549 81548 6 LSQGVTLVVDR Unmodified 1185.6717 0.67173657 790 P23919;P23919-2 DTYMK Thymidylate kinase yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 52.933 53.1 2 2.6136E-05 15089 20211116_3445_TMUAki_TMT10x_S_F6 107.12 63.259 20648000 34956000 260230 38880000 23817000 25191000 21845000 24324000 26457000 25935000 28845000 19226000 32632000 1943300 39183000 22799000 26488000 22404000 24823000 26798000 25263000 27751000 4 4 3 4 4 4 4 4 4 4 4 4558900 8149400 48734 9483000 9528300 11292000 7367900 6097500 6348900 6446000 6949800 4245200 7609200 492980 9607100 9084900 11275000 7555000 6472100 6524800 6281200 6685600 1 1 1 1 1 1 1 1 1 1 1 16089000 26807000 211490 29397000 14288000 13899000 14477000 18226000 20108000 19489000 21895000 14981000 25023000 1450300 29575000 13714000 15212000 14849000 18350000 20273000 18982000 21066000 3 3 2 3 3 3 3 3 3 3 3 530450000 141040000 389410000 12759 790 11854 67473;67474;67475;67476 81550;81551;81552;81553;81554 81554 5 LSQKFPK Unmodified 846.49634 0.49633839 38 CON__P02769 yes yes 0 0 0 1 By MS/MS By MS/MS 2.75 0.829 2 1 1 1 3 40.014 39.938 3 0.015981 13059 20211116_3441_TMUAki_TMT10x_S_F3 79.906 29.028 + 4571400 6081200 31252 5014400 8177100 5366600 5991000 14350000 8023000 10167000 5780100 4256700 5670400 458630 5196100 7787500 5647300 6254100 14011000 7872600 10102000 5645300 4 4 4 4 4 4 4 4 3 4 4 1631800 2076800 11567 1656200 3389800 3540200 3034500 3935200 4895800 3187000 2703800 1519500 1936300 170690 1747400 3242100 3499200 3154200 3958700 4821400 3143400 2676100 1 1 1 1 1 1 1 1 1 1 1 2939600 4004400 19684 3358200 4787300 1826400 2956500 10415000 3127200 6979600 3076300 2737200 3734100 287930 3448700 4545400 2148100 3099900 10053000 3051200 6958200 2969200 3 3 3 3 3 3 3 3 2 3 3 312920000 117380000 195540000 12760 38 11855 67477;67478;67479;67480 81555;81556;81557 81557 3 LSQLEGVNVER Unmodified 1242.6568 0.65681479 2541 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 0 0 0 0 By MS/MS 4 0 1 1 48.724 48.871 2 7.2571E-05 13929 20211116_3431_TMUAki_TMT10x_P_F4 99.539 71.714 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12761 2541 11856 67481 81558 81558 1 LSQNNFALGYK Unmodified 1253.6404 0.64043645 3228 Q9Y277;Q9Y277-2 VDAC3 Voltage-dependent anion-selective channel protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 56.702 56.702 2 3.1874E-15 17074 20211116_3440_TMUAki_TMT10x_S_F2 178.08 118.87 3223900 5212500 0 5787400 6991500 7882500 4500700 3964000 4101300 3887200 4259300 3001500 4866000 289710 5894800 6639200 7812900 4683100 4225800 4195400 3799600 4103900 1 1 0 1 1 1 1 1 1 1 1 3223900 5212500 0 5787400 6991500 7882500 4500700 3964000 4101300 3887200 4259300 3001500 4866000 289710 5894800 6639200 7812900 4683100 4225800 4195400 3799600 4103900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 462740000 462740000 0 12762 3228 11857 67482;67483;67484;67485 81559;81560;81561;81562 81562 4 LSQTSNVDKEEEAVTIEMNEPVQLTFALR Oxidation (M) 3306.629 0.62895165 635 P12004 PCNA Proliferating cell nuclear antigen yes yes 0 0 1 1 By MS/MS By MS/MS 3.5 1.18 1 2 3 5 3 6 8 76.043 75.993 3;4 7.1564E-34 24739 20211116_3440_TMUAki_TMT10x_S_F2 173.53 163.2 54998000 90599000 274770 78706000 54622000 77654000 59493000 48727000 50878000 53179000 62267000 51205000 84494000 3418000 81117000 52470000 78523000 59825000 51135000 52540000 51754000 59714000 16 16 5 16 16 16 16 16 16 16 16 32989000 53859000 159190 47813000 26261000 51484000 32186000 26791000 28310000 29455000 36230000 30713000 50234000 2280700 49259000 25306000 51667000 32218000 28566000 29252000 28658000 34705000 7 7 2 7 7 7 7 7 7 7 7 22008000 36740000 115580 30893000 28361000 26170000 27307000 21936000 22567000 23723000 26037000 20492000 34260000 1137300 31858000 27164000 26856000 27607000 22570000 23289000 23096000 25009000 9 9 3 9 9 9 9 9 9 9 9 13742000000 6717400000 7024700000 12763 635 11858 67486;67487;67488;67489;67490;67491;67492;67493;67494;67495;67496;67497;67498;67499 81563;81564;81565;81566;81567;81568;81569;81570;81571;81572;81573;81574;81575;81576;81577;81578;81579 81574 666 17 LSQVSDSVSGQTVVDPK Unmodified 1744.8843 0.88430813 395 O94906;O94906-2 PRPF6 Pre-mRNA-processing factor 6 yes no 0 0 0 0 By MS/MS By matching 6 1.41 2 1 2 1 55.646 55.837 3 0.00014167 15699 20211116_3433_TMUAki_TMT10x_P_F5 77.221 59.083 7048300 11018000 70334 11917000 10798000 15499000 9524100 8658400 8839100 8110100 9398500 6563100 10285000 686400 12148000 10325000 15414000 9706100 9132100 9042100 7943400 9049000 2 2 1 2 2 2 2 2 2 2 2 7048300 11018000 70334 11917000 10798000 15499000 9524100 8658400 8839100 8110100 9398500 6563100 10285000 686400 12148000 10325000 15414000 9706100 9132100 9042100 7943400 9049000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1164500000 1050400000 114100000 12764 395 11859 67500;67501;67502 81580;81581 81580 2 LSRPERPDLVFEEEDLPYEEEIMR Oxidation (M) 3006.4281 0.42806699 2871 Q9HCS7 XAB2 Pre-mRNA-splicing factor SYF1 yes yes 0 0 1 2 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 63.339 63.155 4 1.1927E-16 21473 20211116_3439_TMUAki_TMT10x_S_F1 128.12 116.04 8664500 16637000 162190 12456000 11676000 17308000 11050000 16444000 14694000 13991000 13419000 8068700 15509000 906080 13075000 11189000 17313000 11354000 16689000 14744000 13766000 12985000 6 6 5 6 6 6 6 6 6 6 6 4625400 9135000 90391 6772800 5815100 12340000 6482800 8669100 7765300 7288400 7114600 4307400 8515100 484380 7159500 5598100 12145000 6580500 8958100 7820600 7175100 6883300 3 3 3 3 3 3 3 3 3 3 3 4039100 7502200 71798 5682800 5861000 4967800 4566900 7774500 6929100 6703100 6304700 3761300 6993500 421700 5915200 5591200 5168000 4773200 7730800 6923600 6590700 6101200 3 3 2 3 3 3 3 3 3 3 3 2272100000 1468400000 803750000 12765 2871 11860 67503;67504;67505 81582;81583;81584;81585;81586;81587 81586 2994 6 LSRPYLVELLSR Unmodified 1444.8402 0.84019889 2036 Q6ZU35 KIAA1211 Uncharacterized protein KIAA1211 yes yes 0 0 0 1 By MS/MS 4 0 1 1 65.642 65.476 3 2.6623E-13 21213 20211116_3442_TMUAki_TMT10x_S_F4 144.8 91.965 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12766 2036 11861 67506 81588 81588 1 LSRQEAVALLQGQR Unmodified 1567.8794 0.87943794 1044;1045 P46108;P46108-2 CRK Adapter molecule crk no no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 49.914 49.695 3 1.2087E-23 14140 20211116_3440_TMUAki_TMT10x_S_F2 190.86 163.76 6924600 11458000 39303 12759000 12048000 11542000 7607900 12381000 12505000 10070000 10858000 6447300 10696000 630070 12906000 11440000 11853000 8100800 12477000 12449000 9930200 10526000 3 3 1 3 3 3 3 3 3 3 3 3139500 4911900 0 5493400 7652400 8396100 4594600 5437100 5660400 4375200 4858500 2922800 4585500 272660 5606600 7257300 8307900 4853400 5645600 5683400 4316800 4711700 1 1 0 1 1 1 1 1 1 1 1 3785100 6546100 39303 7265300 4395800 3146300 3013300 6943700 6844800 5695000 5999700 3524500 6110900 357400 7299400 4182400 3544700 3247400 6830900 6765700 5613500 5813900 2 2 1 2 2 2 2 2 2 2 2 923500000 403590000 519910000 12767 1044;1045 11862 67507;67508;67509;67510 81589;81590;81591;81592 81592 4 LSSAGLIYLHFGHK Unmodified 1541.8354 0.83544786 2854 Q9HB07 C12orf10 UPF0160 protein MYG1, mitochondrial yes yes 0 0 0 0 By MS/MS 4 0 1 1 58.917 58.823 4 0.00013955 18506 20211116_3442_TMUAki_TMT10x_S_F4 86.467 66.889 768460 1231600 10786 1404400 666130 719990 704110 824060 825130 826020 895700 715590 1149900 72329 1410300 640320 778030 715970 832660 836630 806660 861870 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 768460 1231600 10786 1404400 666130 719990 704110 824060 825130 826020 895700 715590 1149900 72329 1410300 640320 778030 715970 832660 836630 806660 861870 1 1 1 1 1 1 1 1 1 1 1 152560000 0 152560000 12768 2854 11863 67511 81593 81593 1 LSSCDSFTSTINELNHCLSLR Unmodified 2453.1315 0.13150782 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.707 1 2 1 3 1 76.361 76.402 3 1.4629E-55 26286 20211116_3435_TMUAki_TMT10x_P_F7 229.6 221.89 13204000 19654000 80086 20025000 12095000 21175000 13337000 12035000 11195000 12146000 14855000 12294000 18340000 1058000 20420000 11627000 21295000 13397000 12701000 11613000 11858000 14216000 4 4 2 4 4 4 4 4 4 4 4 10498000 15570000 60459 15526000 8704800 18059000 10056000 9511100 8810000 9279500 11519000 9774700 14528000 805860 15880000 8378000 18049000 10091000 10095000 9113300 9072400 11028000 3 3 1 3 3 3 3 3 3 3 3 2705300 4083800 19627 4499700 3389800 3115700 3280800 2523600 2385200 2866800 3335300 2519000 3812200 252170 4540400 3248700 3246100 3305900 2606000 2499500 2785700 3188000 1 1 1 1 1 1 1 1 1 1 1 4871300000 4002600000 868730000 12769 542 11864 67512;67513;67514;67515 81594;81595;81596;81597 81594 4 LSSDVLTLLIK Unmodified 1200.7329 0.73293985 955 P36776;P36776-3;P36776-2 LONP1 Lon protease homolog, mitochondrial yes no 0 0 0 0 By MS/MS 2 0 1 1 80.47 80.451 2 7.8944E-15 26652 20211116_3440_TMUAki_TMT10x_S_F2 168.74 79.439 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12770 955 11865 67516 81598 81598 1 LSSEMNTSTVNSAREELMESR 2 Oxidation (M) 2402.069 0.068967141 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 2 1 By MS/MS By MS/MS 2.56 1.07 2 2 3 2 5 4 37.454 37.4 3 5.3484E-07 12481 20211116_3439_TMUAki_TMT10x_S_F1 86.136 77.04 7763400 14042000 35847 14493000 14995000 25240000 10340000 31679000 35879000 22869000 17631000 7227500 13104000 619310 14914000 14252000 25194000 11522000 31621000 34736000 22698000 17573000 13 13 4 13 13 13 13 13 13 13 13 5012900 9020000 2392 9695000 12718000 22557000 8987000 20288000 22742000 14719000 11267000 4666400 8419100 378050 10035000 12092000 22135000 9736800 20576000 22127000 14605000 11224000 7 7 1 7 7 7 7 7 7 7 7 2750500 5021500 33455 4798000 2276400 2682700 1352800 11391000 13137000 8150000 6364500 2561100 4684800 241270 4878900 2160800 3059100 1785300 11045000 12609000 8093200 6349200 6 6 3 6 6 6 6 6 6 6 6 6137500000 3874600000 2262800000 12771 748 11866 67517;67518;67519;67520;67521;67522;67523;67524;67525 81599;81600;81601;81602;81603;81604;81605;81606;81607;81608;81609;81610 81605 862;863 12 LSSEMNTSTVNSAREELMESR Oxidation (M) 2386.0741 0.074052519 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 1 1 By MS/MS By MS/MS 3.2 0.748 2 4 4 5 5 48.28 48.231 3 1.9977E-26 14541 20211116_3430_TMUAki_TMT10x_P_F3 171.79 159.56 56957000 96405000 399730 106560000 79167000 80986000 61699000 54054000 41360000 56959000 74287000 53033000 89994000 4744100 107610000 75473000 83475000 62868000 56405000 44135000 55509000 70643000 19 19 7 19 19 19 19 19 19 19 19 26957000 45224000 95581 49021000 48410000 59073000 41741000 24239000 18382000 26108000 34281000 25099000 42213000 2087100 49892000 46244000 58777000 41966000 26458000 20287000 25421000 32578000 9 9 2 9 9 9 9 9 9 9 9 29999000 51180000 304150 57536000 30756000 21913000 19958000 29816000 22978000 30851000 40006000 27934000 47781000 2657000 57714000 29229000 24698000 20902000 29947000 23848000 30088000 38065000 10 10 5 10 10 10 10 10 10 10 10 6222300000 3747600000 2474800000 12772 748 11866 67526;67527;67528;67529;67530;67531;67532;67533;67534;67535 81611;81612;81613;81614;81615;81616;81617;81618;81619;81620;81621;81622;81623;81624;81625;81626;81627;81628;81629 81613 862;863 19 LSSEMNTSTVNSAREELMESR Unmodified 2370.0791 0.079137897 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 1 By MS/MS By MS/MS 4 0.894 2 1 2 3 2 55.432 55.419 3 0.0083854 19368 20211116_3441_TMUAki_TMT10x_S_F3 48.867 33.446 54352000 80230000 64835 121550000 130700000 85953000 62215000 32654000 41697000 36266000 66672000 50603000 75017000 5117600 120550000 123570000 88561000 66054000 35998000 44203000 35270000 63543000 5 5 1 5 5 5 5 5 5 5 5 39028000 56499000 0 86731000 118580000 78350000 51510000 24013000 32473000 26235000 48551000 36335000 52832000 3838600 86219000 111980000 79114000 55167000 27224000 34439000 25531000 46338000 3 3 0 3 3 3 3 3 3 3 3 15324000 23731000 64835 34814000 12117000 7603200 10705000 8641000 9223800 10030000 18121000 14268000 22185000 1279000 34327000 11586000 9447400 10887000 8774800 9764100 9738800 17205000 2 2 1 2 2 2 2 2 2 2 2 4002000000 2918100000 1083800000 12773 748 11866 67536;67537;67538;67539;67540 81630;81631;81632;81633 81632 4 LSSETESSFSSSADISK Unmodified 1760.7952 0.79521835 2246 Q8NEZ4;Q8NEZ4-3 KMT2C Histone-lysine N-methyltransferase 2C yes no 0 0 0 0 By MS/MS 7 0 1 1 80.973 80.993 2 0.026635 28218 20211116_3435_TMUAki_TMT10x_P_F7 51.841 36.269 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12774 2246 11867 67541 81634 81634 1 LSSLPFQK Unmodified 918.51747 0.51746776 1328 P61970 NUTF2 Nuclear transport factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 59.368 59.126 2 0.00041809 19298 20211116_3429_TMUAki_TMT10x_P_F2 157.58 65.679 69477000 100080000 512160 117460000 133580000 119710000 83239000 91126000 98244000 84231000 100170000 64692000 93446000 6889000 118630000 126830000 121170000 87529000 93887000 99358000 82548000 96570000 10 10 7 10 10 10 10 10 10 10 10 41619000 57042000 204090 68809000 104950000 94183000 57217000 54556000 59139000 50899000 59154000 38752000 53270000 4395500 69745000 99435000 93492000 60593000 57359000 60080000 49862000 57063000 5 5 3 5 5 5 5 5 5 5 5 27858000 43034000 308060 48650000 28628000 25528000 26022000 36570000 39105000 33331000 41016000 25940000 40176000 2493500 48888000 27395000 27680000 26936000 36527000 39278000 32687000 39507000 5 5 4 5 5 5 5 5 5 5 5 2173300000 1244100000 929260000 12775 1328 11868 67542;67543;67544;67545;67546 81635;81636;81637;81638;81639;81640;81641;81642;81643;81644 81638 10 LSSPCIMVVNHDASSIPR Oxidation (M) 1997.9663 0.96628039 1552 Q08J23;Q08J23-2 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 0 0 1 0 By MS/MS By MS/MS 7 0 2 1 1 46.625 47.153 3 2.5094E-08 14198 20211116_3435_TMUAki_TMT10x_P_F7 110.74 93.311 1501400 2474800 13300 2639300 2109700 2819500 1768100 2706700 2651200 2239200 2450700 1398000 2309900 139090 2683600 2014700 2858700 1838700 2743600 2651400 2206200 2370300 2 2 1 2 2 2 2 2 2 2 2 766750 1143100 0 1158900 1334200 2003800 1098800 1267700 1178500 988750 1149800 713870 1066700 65213 1193800 1273000 1972700 1129300 1317700 1194400 977150 1110000 1 1 0 1 1 1 1 1 1 1 1 734640 1331800 13300 1480300 775460 815680 669370 1439000 1472600 1250500 1301000 684120 1243200 73874 1489700 741680 885960 709390 1426000 1456900 1229000 1260300 1 1 1 1 1 1 1 1 1 1 1 488700000 309930000 178770000 12776 1552 11869 67547;67548 81645;81646 81645 2089 2 LSSPERDVERDVFLYR Unmodified 1980.0065 0.0064889465 119 O14579;O14579-3;O14579-2 COPE Coatomer subunit epsilon yes no 0 0 0 2 By MS/MS By MS/MS 4.4 0.8 1 1 3 1 4 52.639 52.694 3;4 1.1105E-42 14574 20211116_3444_TMUAki_TMT10x_S_F5 229.02 196.68 12640000 20722000 274310 23488000 16095000 14083000 12437000 14221000 12315000 13118000 16693000 11771000 19347000 1338700 23625000 15357000 14930000 12803000 14419000 12689000 12857000 15968000 5 5 4 5 5 5 5 5 5 5 5 2233200 3800300 89383 4203700 4580600 5154700 3508100 2664900 2395300 2345000 3070400 2080000 3547600 301320 4274200 4370600 5136600 3580000 2825500 2509500 2303400 2941000 1 1 1 1 1 1 1 1 1 1 1 10407000 16922000 184920 19284000 11515000 8928700 8929100 11556000 9919900 10773000 13623000 9691400 15799000 1037300 19351000 10986000 9793700 9223000 11593000 10180000 10554000 13027000 4 4 3 4 4 4 4 4 4 4 4 2340800000 479300000 1861400000 12777 119 11870 67549;67550;67551;67552;67553 81647;81648;81649;81650;81651 81650 5 LSSPVLHR Unmodified 907.52395 0.52395013 1858 Q16643;Q16643-3;Q16643-2 DBN1 Drebrin yes no 0 0 0 0 By matching By MS/MS 1 0 2 1 1 32.671 32.686 3 0.0122 9010 20211116_3439_TMUAki_TMT10x_S_F1 62.464 26.279 309900 508510 1337.2 469830 329440 299210 385430 208990 243140 255680 357200 288560 474350 27213 479490 317370 313310 383630 218440 257630 247780 341050 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 309900 508510 1337.2 469830 329440 299210 385430 208990 243140 255680 357200 288560 474350 27213 479490 317370 313310 383630 218440 257630 247780 341050 1 1 1 1 1 1 1 1 1 1 1 16456000 10265000 6191800 12778 1858 11871 67554;67555 81652 81652 1 LSSQEESIGTLLDAIICR Unmodified 2004.0198 0.019755749 3272 Q9Y3C4;Q9Y3C4-2;Q9Y3C4-3 TPRKB EKC/KEOPS complex subunit TPRKB yes no 0 0 0 0 By MS/MS 6 0 1 1 81.77 81.776 3 2.7056E-12 26832 20211116_3445_TMUAki_TMT10x_S_F6 132.51 115.02 634010 1125700 0 1127200 839360 628780 853960 526900 474640 520110 734780 590190 1050400 37754 1142300 804040 669010 853710 540660 508690 508240 700760 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 634010 1125700 0 1127200 839360 628780 853960 526900 474640 520110 734780 590190 1050400 37754 1142300 804040 669010 853710 540660 508690 508240 700760 1 1 0 1 1 1 1 1 1 1 1 189990000 0 189990000 12779 3272 11872 67556 81653 81653 1 LSSSDAPAQDTGSSAAAVETDASR Unmodified 2293.0306 0.030591025 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4;Q7Z4S6-6 KIF21A Kinesin-like protein KIF21A yes no 0 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 40.834 40.667 3 2.5691E-87 10342 20211116_3440_TMUAki_TMT10x_S_F2 271.43 256.34 931300 1673100 11213 2732300 3388000 2751200 1287900 2302500 2568700 1703400 2253900 867210 1565100 69270 2712900 3196400 2791500 1455800 2345800 2546000 1688400 2184000 5 5 3 5 5 5 5 5 5 5 5 529690 971590 0 1664000 3061100 2453600 1007200 1443600 1668700 1062300 1418000 493190 909180 26571 1660500 2883400 2428200 1149500 1507300 1659700 1053200 1375600 2 2 0 2 2 2 2 2 2 2 2 401610 701520 11213 1068300 326880 297540 280690 858890 900060 641140 835910 374020 655970 42700 1052400 312950 363270 306300 838420 886270 635150 808360 3 3 3 3 3 3 3 3 3 3 3 246840000 176410000 70431000 12780 2082 11873 67557;67558;67559;67560 81654;81655;81656;81657;81658;81659 81657 6 LSTALAR Unmodified 730.43374 0.43373813 913 P33993;P33993-3 MCM7 DNA replication licensing factor MCM7 yes no 0 0 0 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 34.35 34.668 2 0.033672 7421 20211116_3447_TMUAki_TMT10x_S_F8 77.984 37.536 1795400 2902900 41666 2950300 2836400 2518900 2174200 1434300 1519100 1457600 2160500 1672000 2708900 201300 3000000 2705500 2568300 2219700 1513800 1596900 1422600 2064300 6 6 5 6 6 6 6 6 6 6 6 1008300 1586700 15719 1696600 1994000 1767100 1214800 685510 725240 703640 1204200 938940 1480900 111090 1724100 1893300 1771600 1257900 752110 776220 686470 1146800 4 4 3 4 4 4 4 4 4 4 4 787110 1316300 25947 1253700 842440 751780 959340 748830 793890 753960 956360 733070 1228000 90214 1275900 812280 796760 961870 761660 820650 736150 917530 2 2 2 2 2 2 2 2 2 2 2 62756000 36309000 26447000 12781 913 11874 67561;67562;67563;67564 81660;81661;81662;81663 81663 4 LSTIALALGVER Unmodified 1241.7343 0.73433683 869;870 P30153;P30154;P30154-2;P30154-4;P30154-5 PPP2R1A;PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform no no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 77.562 77.522 2 0.0044659 26742 20211116_3429_TMUAki_TMT10x_P_F2 71.085 38.864 17981000 30552000 134130 27854000 22985000 25256000 23000000 18029000 16559000 18520000 20293000 16742000 28498000 1573700 28568000 22040000 25727000 23129000 18710000 17261000 18067000 19460000 3 3 2 3 3 3 3 3 3 3 3 7876300 13342000 0 11766000 8250200 14422000 9482500 8072500 7531400 8127900 8402100 7332700 12443000 546110 12154000 7934400 14386000 9493700 8529700 7778200 7935800 8078200 1 1 0 1 1 1 1 1 1 1 1 10105000 17210000 134130 16089000 14735000 10834000 13517000 9956800 9028000 10392000 11891000 9409400 16055000 1027600 16414000 14106000 11341000 13636000 10181000 9482500 10131000 11382000 2 2 2 2 2 2 2 2 2 2 2 1109900000 550920000 558980000 12782 869;870 11875 67565;67566 81664;81665;81666 81664 3 LSTLCPSAVLQR Unmodified 1343.7231 0.72312022 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 2 3 58.076 57.781 2;3 2.2994E-31 20330 20211116_3441_TMUAki_TMT10x_S_F3 275.63 236.01 6973600 12674000 126480 12834000 9444800 11511000 7344700 10255000 9183800 9546000 9873400 6494000 11827000 727430 13061000 9010800 11780000 7616800 10469000 9287000 9352400 9503100 3 3 2 3 3 3 3 3 3 3 3 3258400 5810300 118480 5871500 6145700 7883100 4027300 4759500 4406800 4385900 4513500 3034700 5421900 421000 6015600 5846700 7836500 4207600 4985600 4470300 4298900 4350700 1 1 1 1 1 1 1 1 1 1 1 3715200 6864000 7992.9 6962200 3299200 3627700 3317400 5496000 4777000 5160200 5359900 3459300 6405200 306430 7045800 3164100 3943300 3409200 5483600 4816600 5053500 5152500 2 2 1 2 2 2 2 2 2 2 2 1125700000 494990000 630680000 12783 2116 11876 67567;67568;67569;67570;67571 81667;81668;81669;81670;81671 81671 5 LSTLTRPCPGPCHCK Unmodified 1782.8328 0.8327638 1560 Q12756;Q12756-3;Q12756-2 KIF1A Kinesin-like protein KIF1A yes no 0 0 0 1 By MS/MS 3 0 1 1 33.977 33.737 4 2.5595E-06 10517 20211116_3441_TMUAki_TMT10x_S_F3 102.72 76.282 375620 555330 0 603070 330300 284660 341980 252810 274370 242210 439410 349730 518360 29604 607090 316950 308920 344180 258330 287940 236990 418770 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 375620 555330 0 603070 330300 284660 341980 252810 274370 242210 439410 349730 518360 29604 607090 316950 308920 344180 258330 287940 236990 418770 1 1 0 1 1 1 1 1 1 1 1 20945000 0 20945000 12784 1560 11877 67572 81672 81672 1 LSVACFYGGTPYGGQFER Unmodified 2007.9149 0.91489675 2918 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.4 3.04 4 3 3 6 4 70.925 70.843 2;3 3.7969E-63 22636 20211116_3436_TMUAki_TMT10x_P_F8 266.89 216.7 40163000 68114000 333290 64161000 44015000 56668000 46067000 40603000 37587000 41650000 48662000 37395000 63542000 3024500 65622000 42249000 57831000 46358000 42124000 39002000 40634000 46599000 14 14 6 14 14 14 14 14 14 14 14 18004000 29801000 130290 28536000 17821000 32608000 21073000 18032000 16359000 18333000 21233000 16763000 27803000 1235200 29262000 17169000 32640000 21059000 19079000 17022000 17893000 20332000 6 6 2 6 6 6 6 6 6 6 6 22159000 38312000 203000 35625000 26195000 24060000 24994000 22570000 21228000 23316000 27429000 20631000 35739000 1789300 36360000 25080000 25190000 25299000 23046000 21980000 22741000 26268000 8 8 4 8 8 8 8 8 8 8 8 8652700000 4847200000 3805600000 12785 2918 11878 67573;67574;67575;67576;67577;67578;67579;67580;67581;67582 81673;81674;81675;81676;81677;81678;81679;81680;81681;81682;81683;81684;81685;81686;81687 81679 15 LSVDYGK Unmodified 780.40177 0.4017693 1417;2044 P68363;P68366;P68366-2;Q71U36;Q71U36-2;Q9BQE3;P0DPH8;P0DPH7;P0DPH7-2 TUBA1B;TUBA4A;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain no no 0 0 0 0 By MS/MS By MS/MS 5 0.756 2 3 2 3 4 44.096 44.247 2 0.0083013 11147 20211116_3444_TMUAki_TMT10x_S_F5 100.45 20.854 15991000 26838000 0 22899000 26574000 20793000 14422000 10810000 12406000 12906000 19332000 14886000 25028000 1094300 23037000 25150000 21077000 14552000 11095000 12955000 12498000 18435000 3 3 0 2 3 3 2 2 3 3 3 3686000 5824100 0 0 12302000 10600000 0 0 222100 3295000 4179600 3429700 5412700 145290 0 11468000 9895500 0 171260 356640 3062000 3909400 1 1 0 0 1 1 0 0 1 1 1 12305000 21014000 0 22899000 14272000 10193000 14422000 10810000 12184000 9611400 15152000 11456000 19615000 948960 23037000 13682000 11181000 14552000 10924000 12598000 9436400 14525000 2 2 0 2 2 2 2 2 2 2 2 1256800000 408650000 848200000 12786 1417;2044 11879 67583;67584;67585;67586;67587;67588;67589 81688;81689;81690;81691;81692;81693;81694 81692 7 LSVDYGKK Unmodified 908.49673 0.49673232 1417;2044 P68363;P68366;P68366-2;Q71U36;Q71U36-2;Q9BQE3;P0DPH8;P0DPH7;P0DPH7-2 TUBA1B;TUBA4A;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain no no 0 0 0 1 By MS/MS By MS/MS 6.67 1.11 1 2 1 2 4 2 39.21 39.418 3 0.0044589 9807 20211116_3436_TMUAki_TMT10x_P_F8 88.177 62.603 15032000 24108000 190110 20850000 19812000 23465000 13664000 15265000 15678000 13691000 17651000 13998000 22483000 1484600 21540000 18853000 23559000 14244000 15887000 15931000 13437000 16966000 9 9 8 9 9 9 9 9 9 9 9 10760000 16979000 133190 14788000 15096000 18894000 8839700 11047000 11359000 9758000 12387000 10020000 15835000 1076900 15302000 14325000 18819000 9371600 11589000 11482000 9583200 11918000 4 4 4 4 4 4 4 4 4 4 4 4272100 7129100 56925 6062300 4715800 4570200 4824200 4217700 4318800 3933400 5263800 3978100 6648200 407710 6237600 4527500 4739900 4872100 4297500 4449300 3853300 5048500 5 5 4 5 5 5 5 5 5 5 5 2027200000 1493300000 533920000 12787 1417;2044 11880 67590;67591;67592;67593;67594;67595 81695;81696;81697;81698;81699;81700;81701;81702;81703 81698 9 LSVEESEAAGDGVDTK Unmodified 1605.737 0.73697519 1091 P49321;P49321-3;P49321-4 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 47.351 47.113 3 3.758E-21 14414 20211116_3429_TMUAki_TMT10x_P_F2 160.5 145.34 4360600 6988800 50695 8348300 6546900 5367900 4676200 4644300 5412600 4214400 6152200 4060500 6526400 438900 8376000 6233500 5636100 4863900 4745700 5500400 4133700 5911900 3 3 2 3 3 3 3 3 3 3 3 1445500 2112400 7499 2685600 3819500 3070100 1859200 1615800 1858100 1390800 1933900 1346000 1973200 160080 2705100 3613500 3071300 1988300 1709500 1893000 1367600 1863200 1 1 1 1 1 1 1 1 1 1 1 2915100 4876400 43195 5662600 2727500 2297800 2817000 3028500 3554500 2823600 4218300 2714600 4553200 278820 5671000 2620100 2564800 2875600 3036200 3607400 2766100 4048700 2 2 1 2 2 2 2 2 2 2 2 548140000 252150000 295980000 12788 1091 11881 67596;67597;67598;67599 81704;81705;81706;81707 81705 4 LSVEGFAVDK Unmodified 1063.555 0.55497548 1246 P55786;P55786-2 NPEPPS Puromycin-sensitive aminopeptidase yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 62.218 62.205 2 0.00060757 19397 20211116_3431_TMUAki_TMT10x_P_F4 102.55 32.634 14567000 23705000 769.34 25819000 21184000 22749000 16656000 16557000 16200000 16376000 19828000 13562000 22127000 1185100 26145000 20191000 23225000 17117000 17141000 16630000 16001000 19015000 2 2 1 2 2 2 2 2 2 2 2 8399800 12616000 0 14207000 14037000 16506000 9665600 8622800 9267400 9104600 10459000 7820200 11778000 659380 14415000 13342000 16496000 10021000 9179300 9487700 8872200 10053000 1 1 0 1 1 1 1 1 1 1 1 6166700 11089000 769.34 11613000 7146600 6243100 6990100 7933800 6932900 7271300 9369200 5741800 10349000 525700 11730000 6848600 6729200 7096800 7961400 7142000 7128800 8962700 1 1 1 1 1 1 1 1 1 1 1 793940000 503580000 290360000 12789 1246 11882 67600;67601;67602 81708;81709;81710 81708 3 LSVENVPCIVTLCK Unmodified 1630.8422 0.84224908 1756 Q15024 EXOSC7 Exosome complex component RRP42 yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 2 1 74.438 74.382 3 1.7445E-06 23906 20211116_3428_TMUAki_TMT10x_P_F1 88.73 67.777 7473600 11885000 45369 11279000 8540600 12355000 8558600 8188400 6675000 8644000 9049700 6959000 11087000 676840 11565000 8192300 12426000 8622100 8549300 6957400 8423400 8656400 2 2 2 2 2 2 2 2 2 2 2 4318200 6483200 9322.5 6252100 4773900 8973400 5171800 4800700 3908000 5039000 5084300 4020800 6048600 373080 6435200 4588000 8879900 5186100 5098700 4072700 4911600 4868300 1 1 1 1 1 1 1 1 1 1 1 3155300 5401500 36047 5026500 3766700 3381400 3386800 3387700 2767000 3605000 3965400 2938200 5038800 303760 5129700 3604300 3546300 3436100 3450600 2884600 3511900 3788200 1 1 1 1 1 1 1 1 1 1 1 1121600000 681540000 440080000 12790 1756 11883 67603;67604;67605 81711;81712;81713 81711 3 LSVISVEDPPQR Unmodified 1338.7143 0.71432967 968 P38117;P38117-2 ETFB Electron transfer flavoprotein subunit beta yes no 0 0 0 0 By MS/MS 4 0 1 1 51.746 51.912 2 6.7504E-08 15161 20211116_3431_TMUAki_TMT10x_P_F4 120.33 105.57 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12791 968 11884 67606 81714 81714 1 LSVLGAITSVQQR Unmodified 1370.7882 0.78816332 1360 P62495;P62495-2 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 4 4 4 6 6 68.933 68.81 2;3 5.7596E-23 21211 20211116_3444_TMUAki_TMT10x_S_F5 214.67 174.57 28451000 47594000 186770 45327000 33440000 38056000 31124000 35239000 33876000 34571000 36943000 26491000 44402000 2453800 46293000 32007000 39154000 31776000 35951000 34452000 33791000 35542000 12 12 6 12 12 12 12 12 12 12 12 9316300 14475000 83561 13790000 10516000 19092000 11303000 10666000 10712000 11389000 11289000 8674500 13504000 799430 14196000 10104000 18933000 11405000 11291000 10944000 11093000 10872000 4 4 1 4 4 4 4 4 4 4 4 19135000 33119000 103210 31537000 22924000 18964000 19821000 24574000 23164000 23181000 25654000 17816000 30897000 1654400 32096000 21903000 20221000 20371000 24660000 23508000 22698000 24670000 8 8 5 8 8 8 8 8 8 8 8 5445800000 2117800000 3328000000 12792 1360 11885 67607;67608;67609;67610;67611;67612;67613;67614;67615;67616;67617;67618 81715;81716;81717;81718;81719;81720;81721;81722;81723;81724;81725;81726;81727;81728 81726 14 LSVSGRDENSVELTMAEGPYK Oxidation (M) 2297.0845 0.08454085 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 1 1 By MS/MS By MS/MS 4.15 0.948 4 4 4 1 6 7 50.515 50.558 3;4 9.2967E-27 14543 20211116_3431_TMUAki_TMT10x_P_F4 176.11 165.33 63024000 107980000 858550 108730000 84152000 112180000 70598000 99424000 110550000 93859000 94979000 58687000 100760000 5897300 110920000 80391000 113780000 73556000 101560000 110160000 91897000 92105000 22 22 17 22 22 22 22 22 22 22 22 30090000 48335000 725950 50886000 53731000 76510000 40438000 45305000 50825000 43510000 43489000 28022000 45111000 3501100 52115000 51230000 75662000 42035000 47584000 50991000 42568000 42179000 10 10 9 10 10 10 10 10 10 10 10 32934000 59649000 132600 57841000 30421000 35667000 30160000 54119000 59723000 50349000 51490000 30665000 55652000 2396200 58803000 29162000 38118000 31522000 53981000 59172000 49329000 49926000 12 12 8 12 12 12 12 12 12 12 12 8653000000 4784000000 3869000000 12793 1730 11886 67619;67620;67621;67622;67623;67624;67625;67626;67627;67628;67629;67630;67631 81729;81730;81731;81732;81733;81734;81735;81736;81737;81738;81739;81740;81741;81742;81743;81744;81745;81746;81747;81748;81749;81750 81733 2324 22 LSVSGRDENSVELTMAEGPYK Unmodified 2281.0896 0.089626228 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 58.274 58.404 3 5.1265E-32 17769 20211116_3431_TMUAki_TMT10x_P_F4 168.27 153.31 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12794 1730 11886 67632;67633 81751;81752 81751 2 LSVVEYDPGTHDLK Unmodified 1571.7831 0.78313752 1558 Q10570 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 59.486 59.181 3 0.1108 18090 20211116_3440_TMUAki_TMT10x_S_F2 23.934 6.6818 41894000 75337000 785940 56940000 56061000 61463000 55414000 82083000 72339000 68295000 68601000 39014000 70229000 4404200 59455000 53786000 62799000 56766000 82003000 72719000 67268000 66293000 3 3 3 3 3 3 3 3 3 3 3 11515000 18147000 327550 13952000 19060000 30094000 17808000 21149000 18820000 17943000 17860000 10724000 16918000 1365600 14771000 18264000 29461000 18160000 21859000 19068000 17656000 17259000 1 1 1 1 1 1 1 1 1 1 1 30379000 57190000 458390 42987000 37002000 31370000 37605000 60934000 53518000 50351000 50741000 28289000 53311000 3038600 44683000 35522000 33338000 38606000 60144000 53651000 49612000 49034000 2 2 2 2 2 2 2 2 2 2 2 2577500000 747850000 1829700000 12795 1558 11887 67634;67635;67636 81753 81753 1 LTAALVLR Unmodified 855.55419 0.55418762 1164 P51812 RPS6KA3 Ribosomal protein S6 kinase alpha-3 yes yes 0 0 0 0 By MS/MS 1 0 1 1 31.594 31.643 3 0.080047 8575 20211116_3439_TMUAki_TMT10x_S_F1 43.246 5.0083 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12796 1164 11888 67637 81754 81754 1 LTADDEAFLSANAGAILSQFEK Unmodified 2310.138 0.13795663 2332 Q8WZA0;Q8WZA0-2 LZIC Protein LZIC yes no 0 0 0 0 By MS/MS By MS/MS 4.11 2.28 1 2 1 2 1 1 1 5 4 81.638 81.634 3 2.8874E-76 26763 20211116_3445_TMUAki_TMT10x_S_F6 262.58 247.65 10866000 17347000 126240 16566000 11810000 15473000 14250000 10014000 11000000 11710000 13628000 10118000 16183000 958560 16939000 11388000 15707000 14226000 10508000 11426000 11367000 13065000 9 9 7 9 9 9 9 9 9 9 9 5077800 7484700 14796 7674500 4917400 8073600 5598600 4325900 5056700 5140300 5930700 4727500 6984700 359330 7821800 4728300 8116000 5626500 4611800 5199100 4986800 5694100 4 4 2 4 4 4 4 4 4 4 4 5788400 9862100 111450 8891300 6892200 7399100 8651100 5688100 5943600 6569600 7697600 5390400 9198700 599220 9116800 6659600 7591300 8599400 5896000 6227300 6379900 7371300 5 5 5 5 5 5 5 5 5 5 5 3521000000 2226600000 1294400000 12797 2332 11889 67638;67639;67640;67641;67642;67643;67644;67645;67646 81755;81756;81757;81758;81759;81760;81761;81762;81763 81762 9 LTADFREDPDPR Unmodified 1430.679 0.6790068 703 P17174 GOT1 Aspartate aminotransferase, cytoplasmic yes yes 0 0 0 1 By MS/MS By MS/MS 2.75 0.829 2 1 1 1 3 39.846 39.77 3 0.00351 10058 20211116_3440_TMUAki_TMT10x_S_F2 64.65 43.793 2523200 3871500 162520 4490800 4909000 4484800 3353500 4759700 4129400 3508900 4302100 2350600 3614800 394070 4537600 4677700 4575300 3506900 4788000 4173100 3478500 4144700 3 3 3 3 3 3 3 3 3 3 3 1155000 1673900 63881 2015400 3380800 3031900 1764200 2600500 2065200 1744800 2092500 1075900 1563200 186460 2047100 3204900 3016300 1883400 2640200 2088800 1739300 2017700 1 1 1 1 1 1 1 1 1 1 1 1368300 2197600 98638 2475500 1528300 1452900 1589200 2159100 2064200 1764100 2209600 1274700 2051700 207610 2490500 1472900 1559000 1623500 2147800 2084300 1739200 2127000 2 2 2 2 2 2 2 2 2 2 2 257260000 99297000 157970000 12798 703 11890 67647;67648;67649;67650 81764;81765;81766 81765 3 LTADFREDPDPRK Unmodified 1558.774 0.77396981 703 P17174 GOT1 Aspartate aminotransferase, cytoplasmic yes yes 0 0 0 2 By MS/MS By matching 4.5 0.5 1 1 1 1 38.57 38.657 4 0.064779 9836 20211116_3431_TMUAki_TMT10x_P_F4 43.03 29.351 1116100 1687000 15376 2206700 2662900 2264400 1286900 1152400 1362900 1105800 1521100 1039300 1576100 128530 2215400 2519700 2278300 1379700 1226400 1388800 1081900 1462500 1 1 1 1 1 1 1 1 1 1 1 1116100 1687000 15376 2206700 2662900 2264400 1286900 1152400 1362900 1105800 1521100 1039300 1576100 128530 2215400 2519700 2278300 1379700 1226400 1388800 1081900 1462500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 119530000 91929000 27600000 12799 703 11891 67651;67652 81767 81767 1 LTAELIEQAAQYTNAVR Unmodified 1889.9847 0.98469087 584 P09661 SNRPA1 U2 small nuclear ribonucleoprotein A' yes yes 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 4 2 3 3 79.158 79.185 2;3 1.2344E-21 27931 20211116_3446_TMUAki_TMT10x_S_F7 166.3 150.41 19147000 31439000 512840 29149000 18534000 30385000 22019000 17986000 17983000 19630000 22773000 17832000 29328000 2056800 29917000 17890000 30599000 22028000 18962000 18641000 19104000 21820000 6 6 6 6 6 6 6 6 6 6 6 14179000 23657000 378740 21581000 12903000 25130000 15943000 13565000 13993000 14723000 17017000 13205000 22067000 1510600 22216000 12471000 25122000 15953000 14410000 14428000 14331000 16322000 4 4 4 4 4 4 4 4 4 4 4 4968300 7782000 134100 7567900 5631300 5254700 6075800 4420600 3989800 4907200 5756500 4626900 7260600 546170 7701000 5418800 5477100 6075100 4551200 4212900 4772600 5498300 2 2 2 2 2 2 2 2 2 2 2 4652800000 2032400000 2620300000 12800 584 11892 67653;67654;67655;67656;67657;67658 81768;81769;81770;81771;81772;81773 81772 6 LTAFVNTLNGK Unmodified 1176.6503 0.65027285 1232 P55036;P55036-2;A2A3N6 PSMD4;PIPSL 26S proteasome non-ATPase regulatory subunit 4;Putative PIP5K1A and PSMD4-like protein yes no 0 0 0 0 By MS/MS 3 0 1 1 69.077 68.794 2 5.8922E-05 23754 20211116_3430_TMUAki_TMT10x_P_F3 100.88 57.571 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12801 1232 11893 67659 81774 81774 1 LTAIDILTTCAADIQR Unmodified 1773.9295 0.92948418 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 By MS/MS By MS/MS 6.69 1.1 3 4 4 5 9 7 79.437 79.445 2;3 2.1716E-69 27790 20211116_3446_TMUAki_TMT10x_S_F7 309.45 264.29 50984000 85477000 385920 77670000 59945000 74469000 60718000 45726000 41806000 48664000 61120000 47469000 79730000 4160900 79740000 57485000 75415000 60963000 48029000 44043000 47407000 58362000 12 12 5 12 12 12 12 12 12 12 12 29590000 48267000 72624 44748000 29837000 50523000 34224000 25541000 22931000 27191000 34641000 27549000 45025000 2083200 45985000 28695000 50552000 34136000 27279000 24238000 26488000 33054000 7 7 3 7 7 7 7 7 7 7 7 21393000 37210000 313300 32922000 30108000 23946000 26494000 20184000 18875000 21473000 26479000 19921000 34705000 2077700 33754000 28790000 24863000 26827000 20750000 19805000 20918000 25308000 5 5 2 5 5 5 5 5 5 5 5 17787000000 9617200000 8169400000 12802 352 11894 67660;67661;67662;67663;67664;67665;67666;67667;67668;67669;67670;67671;67672;67673;67674;67675 81775;81776;81777;81778;81779;81780;81781;81782;81783;81784;81785;81786;81787 81784 13 LTALAEDRPLFDGPSRPSVAR Unmodified 2267.2022 0.20222864 396 O94913 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 yes yes 0 0 0 2 By MS/MS By matching 7.67 0.471 1 2 2 1 52.549 52.782 4 5.6716E-07 15279 20211116_3436_TMUAki_TMT10x_P_F8 85.969 60.647 3494600 5788800 0 5848500 4775600 7772000 4691900 4609000 4965800 4408500 4712900 3253700 5401800 296560 5991000 4576300 7727900 4772000 4839800 5030900 4313800 4554200 1 1 0 1 1 1 1 1 1 1 1 3494600 5788800 0 5848500 4775600 7772000 4691900 4609000 4965800 4408500 4712900 3253700 5401800 296560 5991000 4576300 7727900 4772000 4839800 5030900 4313800 4554200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1547500000 1092400000 455060000 12803 396 11895 67676;67677;67678 81788 81788 1 LTALDYHNPAGFNCKDETEFR Unmodified 2497.1332 0.13322238 3220 Q9Y224 C14orf166 UPF0568 protein C14orf166 yes yes 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 54.411 54.818 4 4.0521E-05 15447 20211116_3434_TMUAki_TMT10x_P_F6 77.287 57.389 12504000 20607000 142430 22762000 18039000 24597000 15991000 11854000 12892000 12685000 14768000 11644000 19237000 1232700 23096000 17252000 24658000 16232000 12720000 13318000 12354000 14188000 2 2 1 2 2 2 2 2 2 2 2 12504000 20607000 142430 22762000 18039000 24597000 15991000 11854000 12892000 12685000 14768000 11644000 19237000 1232700 23096000 17252000 24658000 16232000 12720000 13318000 12354000 14188000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2422200000 2422200000 0 12804 3220 11896 67679;67680 81789;81790 81790 2 LTALQAQPGSIVPTLVLAESLPGATTR Unmodified 2703.5171 0.51708042 2499 Q96IR7 HPDL 4-hydroxyphenylpyruvate dioxygenase-like protein yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 80.543 80.507 3 9.5499E-25 28429 20211116_3430_TMUAki_TMT10x_P_F3 149.66 131.37 4291200 7752000 83673 7618700 4586400 7370000 5157000 4670300 5028800 4880900 5694700 3996100 7232900 247680 7778000 4417100 7462700 5197100 4891000 5145200 4758200 5472800 4 4 2 4 4 4 4 4 4 4 4 3181900 5363200 83673 5617800 3042200 5937300 3765600 3380000 3541400 3683700 3992000 2963300 5005400 247680 5717900 2940300 5971300 3774900 3574700 3628600 3585200 3837000 3 3 2 3 3 3 3 3 3 3 3 1109200 2388800 0 2000900 1544200 1432700 1391400 1290300 1487400 1197200 1702700 1032800 2227600 0 2060200 1476800 1491400 1422300 1316300 1516600 1173100 1635800 1 1 0 1 1 1 1 1 1 1 1 4311900000 2768600000 1543300000 12805 2499 11897 67681;67682;67683 81791;81792;81793;81794 81792 4 LTAPEDVFSK Unmodified 1105.5655 0.56554017 2352 Q92621 NUP205 Nuclear pore complex protein Nup205 yes yes 0 0 0 0 By MS/MS 5 0 1 1 60.386 60.491 2 0.003402 17818 20211116_3444_TMUAki_TMT10x_S_F5 76.282 47.883 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12806 2352 11898 67684 81795 81795 1 LTATPTPLGGMTGFHMQTEDR 2 Oxidation (M) 2292.0515 0.051466583 345 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 2 0 By MS/MS By MS/MS 6 0 3 1 2 44.74 44.905 3 1.9189E-07 11739 20211116_3445_TMUAki_TMT10x_S_F6 91.889 81.255 319200 630190 0 652630 264990 302580 263150 584260 686380 541140 526040 297190 588120 24400 658970 253960 336170 280120 578530 674070 530280 512420 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 319200 630190 0 652630 264990 302580 263150 584260 686380 541140 526040 297190 588120 24400 658970 253960 336170 280120 578530 674070 530280 512420 1 1 0 1 1 1 1 1 1 1 1 88884000 0 88884000 12807 345 11899 67685;67686;67687 81796;81797;81798 81797 252;253 3 LTAYAMTIPFVR Oxidation (M) 1397.7377 0.73770765 992 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 1 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 70.508 70.228 2 0.11035 24421 20211116_3430_TMUAki_TMT10x_P_F3 46.022 18.401 11971000 21219000 289360 20153000 13094000 15343000 14503000 10668000 10917000 11550000 15253000 11148000 19795000 1277900 20563000 12608000 15822000 14526000 11109000 11417000 11244000 14580000 3 3 3 3 3 3 3 3 3 3 3 3324300 4952600 72786 5299700 3123400 5484000 3705100 3450100 3145600 3274400 4012100 3095800 4622600 340620 5384800 3013900 5529700 3710500 3605200 3255300 3205100 3843500 1 1 1 1 1 1 1 1 1 1 1 8646700 16266000 216580 14853000 9970500 9858600 10798000 7218300 7771600 8276000 11241000 8052600 15173000 937260 15178000 9594100 10292000 10816000 7504000 8161800 8039200 10736000 2 2 2 2 2 2 2 2 2 2 2 1226200000 301440000 924740000 12808 992 11900 67688;67689;67690 81799 81799 1277 1 LTDCVVMRDPASK Oxidation (M) 1506.717 0.71704856 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 1 1 By MS/MS By MS/MS 5.38 0.992 2 2 3 1 4 4 38.275 38.423 3 0.00021483 8845 20211116_3434_TMUAki_TMT10x_P_F6 86.944 66.563 15742000 21594000 12890 30907000 32973000 19475000 17059000 7863500 9763100 8437900 17134000 14656000 20184000 1424100 30702000 31208000 20284000 17910000 8598300 10513000 8217200 16301000 11 11 4 11 11 11 11 11 11 11 11 12156000 16408000 3298.7 23462000 30402000 17266000 13138000 6003200 7473900 6325000 13018000 11318000 15336000 1152200 23344000 28710000 17718000 14054000 6681700 8048000 6164100 12386000 7 7 2 7 7 7 7 7 7 7 7 3585700 5186100 9591.5 7445800 2570400 2209300 3920800 1860200 2289200 2112900 4116500 3338500 4847600 271920 7358000 2497800 2565800 3855900 1916500 2465100 2053200 3914500 4 4 2 4 4 4 4 4 4 4 4 2236100000 1613900000 622190000 12809 772 11901 67691;67692;67693;67694;67695;67696;67697;67698 81800;81801;81802;81803;81804;81805;81806;81807;81808;81809;81810;81811 81806 900 12 LTDCVVMRDPASK Unmodified 1490.7221 0.72213394 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 1 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 45.496 45.759 3 6.0288E-12 12888 20211116_3433_TMUAki_TMT10x_P_F5 154.13 133.18 80083000 115250000 1233100 153380000 126030000 100900000 85679000 61354000 67527000 57114000 93515000 74571000 107690000 8078400 153000000 119880000 105140000 88455000 64250000 70414000 55955000 89406000 11 11 8 11 11 11 11 11 11 11 11 47551000 66186000 640350 83953000 101780000 79025000 52154000 38985000 42748000 36646000 54944000 44277000 61825000 5099600 84318000 96368000 79909000 55206000 41588000 44333000 35886000 52625000 6 6 4 6 6 6 6 6 6 6 6 32532000 49067000 592760 69428000 24248000 21876000 33525000 22370000 24780000 20469000 38571000 30294000 45861000 2978800 68678000 23509000 25230000 33250000 22662000 26081000 20069000 36781000 5 5 4 5 5 5 5 5 5 5 5 4956600000 2744800000 2211800000 12810 772 11901 67699;67700;67701;67702;67703;67704 81812;81813;81814;81815;81816;81817;81818;81819;81820;81821;81822 81813 11 LTDCVVMRDPASKR Unmodified 1646.8232 0.82324497 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 2 By MS/MS By MS/MS 6.79 2.4 2 3 9 10 4 30.677 30.876 3;4 2.9163E-14 9052 20211116_3436_TMUAki_TMT10x_P_F8 141.46 111.73 19265000 28453000 179680 30126000 32787000 31723000 25364000 15991000 15202000 16260000 22762000 17938000 26556000 1801700 30639000 31252000 31865000 25801000 17061000 16179000 15870000 21724000 20 20 12 20 20 20 20 20 20 20 20 12008000 17536000 153180 18765000 26843000 25100000 16966000 10513000 9971900 10279000 13992000 11181000 16367000 1277800 19151000 25495000 24852000 17510000 11418000 10593000 10048000 13373000 13 13 8 13 13 13 13 13 13 13 13 7257100 10917000 26495 11361000 5944400 6622800 8397700 5478400 5230300 5981600 8770100 6756600 10189000 523870 11488000 5757600 7013500 8291900 5642900 5585100 5821200 8350600 7 7 4 7 7 7 7 7 7 7 7 1419500000 955120000 464350000 12811 772 11902 67705;67706;67707;67708;67709;67710;67711;67712;67713;67714;67715;67716;67717;67718 81823;81824;81825;81826;81827;81828;81829;81830;81831;81832;81833;81834;81835;81836;81837;81838;81839;81840;81841;81842 81835 20 LTDCVVMRDPASKR Oxidation (M) 1662.8182 0.81815959 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 1 2 By MS/MS By MS/MS 7 1.41 1 2 2 1 33.267 33.536 4 0.010182 6840 20211116_3447_TMUAki_TMT10x_S_F8 57.328 43.924 1425600 1932800 14485 2202700 2454600 2482200 1632100 1491700 1302100 1509500 1753100 1327400 1804500 137470 2232300 2333200 2489200 1688300 1567200 1355100 1473500 1677200 4 4 1 4 4 4 4 4 4 4 4 975950 1316400 14485 1536900 2143600 2089500 1121300 1181100 1058400 1175400 1261800 908790 1229200 108110 1560600 2030400 2074200 1188800 1246500 1086700 1148200 1210900 2 2 1 2 2 2 2 2 2 2 2 449600 616400 0 665860 311060 392640 510810 310660 243650 334100 491380 418580 575350 29363 671710 302890 415010 499420 320700 268350 325330 466350 2 2 0 2 2 2 2 2 2 2 2 200280000 146450000 53834000 12812 772 11902 67719;67720;67721 81843;81844;81845;81846 81845 900 4 LTDEQVALVR Unmodified 1142.6295 0.62953741 1679 Q14137;Q14137-2 BOP1 Ribosome biogenesis protein BOP1 yes no 0 0 0 0 By MS/MS 3 0 1 1 48.987 48.635 2 0.0057094 16590 20211116_3441_TMUAki_TMT10x_S_F3 75.509 49.57 1520100 2579100 28343 2958100 1516600 1307000 1322000 1908500 2036500 1639000 2141400 1415600 2408000 152390 2966200 1451000 1446900 1373200 1902000 2044200 1611800 2062500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1520100 2579100 28343 2958100 1516600 1307000 1322000 1908500 2036500 1639000 2141400 1415600 2408000 152390 2966200 1451000 1446900 1373200 1902000 2044200 1611800 2062500 1 1 1 1 1 1 1 1 1 1 1 101990000 0 101990000 12813 1679 11903 67722 81847 81847 1 LTDFGFCAQITPEQSK Unmodified 1840.8665 0.86654957 1606;1602 Q13177;O75914;O75914-3;O75914-2;O75914-4;Q13153;Q13153-2 PAK2;PAK3;PAK1 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34;Serine/threonine-protein kinase PAK 3;Serine/threonine-protein kinase PAK 1 no no 0 0 0 0 By MS/MS By MS/MS 6.43 0.728 1 2 4 3 4 72.138 72.24 2;3 1.1186E-45 24541 20211116_3435_TMUAki_TMT10x_P_F7 219.74 197.51 37285000 61042000 217070 55969000 40219000 46503000 41710000 25847000 27680000 29361000 40677000 34716000 56940000 3075200 57314000 38598000 47494000 41796000 27427000 29235000 28531000 38838000 6 6 2 6 6 6 6 6 6 6 6 17246000 27958000 217070 25234000 16639000 26985000 18575000 12474000 13480000 14725000 19136000 16059000 26077000 1523200 25962000 16009000 27056000 18583000 13482000 14137000 14288000 18285000 3 3 2 3 3 3 3 3 3 3 3 20039000 33084000 0 30734000 23581000 19518000 23134000 13373000 14200000 14636000 21542000 18657000 30862000 1552000 31352000 22589000 20437000 23213000 13944000 15097000 14242000 20553000 3 3 0 3 3 3 3 3 3 3 3 5243300000 2532200000 2711100000 12814 1606;1602 11904 67723;67724;67725;67726;67727;67728;67729 81848;81849;81850;81851;81852;81853;81854;81855;81856 81851 9 LTDFGFCAQITPEQSKR Unmodified 1996.9677 0.9676606 1606;1602 Q13177;O75914;O75914-3;O75914-2;O75914-4;Q13153;Q13153-2 PAK2;PAK3;PAK1 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34;Serine/threonine-protein kinase PAK 3;Serine/threonine-protein kinase PAK 1 no no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 61.144 61.372 3 6.1525E-31 18190 20211116_3447_TMUAki_TMT10x_S_F8 199.05 180.46 11576000 19926000 28508 16026000 14835000 25445000 14137000 29960000 21143000 22172000 19279000 10777000 18579000 862120 16765000 14198000 25442000 14593000 30000000 21136000 21976000 18655000 5 5 1 5 5 5 5 5 5 5 5 4954700 8063600 0 6124800 5074500 14476000 6313500 13442000 9048500 9710900 8143100 4612100 7516900 259000 6510100 4886800 14209000 6424000 13607000 9053500 9637800 7883400 2 2 0 2 2 2 2 2 2 2 2 6621200 11863000 28508 9900900 9760500 10969000 7823300 16518000 12094000 12462000 11136000 6165100 11062000 603120 10255000 9310800 11233000 8169000 16393000 12083000 12338000 10772000 3 3 1 3 3 3 3 3 3 3 3 1714100000 600810000 1113200000 12815 1606;1602 11905 67730;67731;67732;67733 81857;81858;81859;81860;81861;81862 81861 6 LTDHGLEEISSCR Unmodified 1515.6988 0.69875596 439 O95630 STAMBP STAM-binding protein yes yes 0 0 0 0 By MS/MS 3 0 2 2 39.429 39.482 3 0.023947 11743 20211116_3430_TMUAki_TMT10x_P_F3 51.643 36.671 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12816 439 11906 67734;67735 81863;81864 81864 2 LTDIHGNVLQYHK Unmodified 1536.8049 0.80487601 449 O95861;O95861-4;O95861-2;O95861-3 BPNT1 3'(2'),5'-bisphosphate nucleotidase 1 yes no 0 0 0 0 By matching By MS/MS 7 0 2 1 1 44.44 44.955 4 3.1858E-09 13725 20211116_3446_TMUAki_TMT10x_S_F7 128.54 108.96 911750 1578100 22014 1790900 948600 853300 886410 1521100 1465500 1302200 1502600 849100 1473300 96623 1797900 909330 942130 920300 1506300 1466900 1280800 1448400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 911750 1578100 22014 1790900 948600 853300 886410 1521100 1465500 1302200 1502600 849100 1473300 96623 1797900 909330 942130 920300 1506300 1466900 1280800 1448400 2 2 2 2 2 2 2 2 2 2 2 203780000 146490000 57296000 12817 449 11907 67736;67737 81865;81866 81865 2 LTDISVTDPEKYPHMLSVK Oxidation (M) 2188.1086 0.10857076 3260 Q9Y333 LSM2 U6 snRNA-associated Sm-like protein LSm2 yes yes 0 0 1 1 By MS/MS 6.5 0.5 1 1 2 57.223 57.625 4 0.0079709 18447 20211116_3435_TMUAki_TMT10x_P_F7 53.453 43.396 8681600 15648000 26886 15580000 14666000 21023000 12497000 11432000 9846100 10610000 11330000 8083600 14601000 828640 15980000 14010000 20865000 12707000 12082000 10185000 10396000 10884000 1 1 1 1 1 1 1 1 1 1 1 8681600 15648000 26886 15580000 14666000 21023000 12497000 11432000 9846100 10610000 11330000 8083600 14601000 828640 15980000 14010000 20865000 12707000 12082000 10185000 10396000 10884000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1719100000 1719100000 0 12818 3260 11908 67738;67739 81867 81867 3239 1 LTDTSKDEENHEESESLQEDMLGNR Oxidation (M) 2921.2469 0.24686774 2152 Q8IX12;Q8IX12-2 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 0 0 1 1 By MS/MS 1.5 0.5 1 1 2 39.378 39.248 4 2.7265E-13 9707 20211116_3428_TMUAki_TMT10x_P_F1 121.38 114.58 123790 214950 4520.3 310580 473960 518310 251720 237040 310170 206920 252260 115300 200930 19380 313200 449140 508890 268760 254300 310930 203330 245140 1 1 1 1 1 1 1 1 1 1 1 123790 214950 4520.3 310580 473960 518310 251720 237040 310170 206920 252260 115300 200930 19380 313200 449140 508890 268760 254300 310930 203330 245140 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 232270000 232270000 0 12819 2152 11909 67740;67741 81868 81868 2613 1 LTDYVAFLEN Unmodified 1183.5761 0.57610486 2594 Q99627;Q99627-2 COPS8 COP9 signalosome complex subunit 8 yes no 0 0 0 0 By MS/MS By MS/MS 3.78 1.31 2 2 2 2 1 4 5 81.143 81.132 2 0.0020016 29679 20211116_3441_TMUAki_TMT10x_S_F3 82.529 68.012 32431000 47317000 2542500 60210000 28500000 36131000 35584000 18767000 18363000 21831000 32941000 30215000 44200000 5003200 60154000 27660000 37903000 35191000 20049000 19952000 21195000 31325000 8 8 8 8 8 8 8 8 8 8 8 11900000 17780000 1063400 23022000 9787800 17494000 11322000 7199300 6593500 8068500 12022000 11088000 16610000 1948100 23033000 9488000 17931000 11258000 7865300 7107300 7844400 11429000 3 3 3 3 3 3 3 3 3 3 3 20531000 29537000 1479100 37188000 18713000 18637000 24261000 11568000 11770000 13762000 20919000 19128000 27590000 3055100 37121000 18172000 19972000 23932000 12184000 12845000 13350000 19896000 5 5 5 5 5 5 5 5 5 5 5 4704800000 2619200000 2085700000 12820 2594 11910 67742;67743;67744;67745;67746;67747;67748;67749;67750 81869;81870;81871;81872;81873 81872 5 LTEDKADVQSIIGLQR Unmodified 1784.9632 0.96322715 1615 Q13263;Q13263-2 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 1 By MS/MS By MS/MS 5.3 1.27 1 2 2 3 2 6 4 64.044 64.15 2;3 3.0846E-57 19259 20211116_3434_TMUAki_TMT10x_P_F6 252.08 243.19 207720000 361280000 3342600 299950000 300620000 394490000 285610000 384570000 366660000 352750000 344260000 193430000 336890000 20764000 311750000 288020000 395830000 293000000 390560000 368680000 345830000 332790000 13 13 10 13 13 13 13 13 13 13 13 116870000 202270000 2533300 172080000 171950000 273620000 170090000 218470000 210580000 197230000 198970000 108840000 188630000 12822000 179200000 164980000 271240000 173880000 224270000 212050000 193500000 192300000 7 7 7 7 7 7 7 7 7 7 7 90849000 159010000 809360 127880000 128670000 120880000 115510000 166100000 156080000 155520000 145290000 84589000 148260000 7942200 132550000 123040000 124590000 119110000 166280000 156630000 152320000 140490000 6 6 3 6 6 6 6 6 6 6 6 16651000000 9510500000 7140800000 12821 1615 11911 67751;67752;67753;67754;67755;67756;67757;67758;67759;67760 81874;81875;81876;81877;81878;81879;81880;81881;81882;81883;81884;81885 81879 12 LTEDLEYHELLDR Unmodified 1644.7995 0.79951586 763 P22059 OSBP Oxysterol-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 59.578 59.431 3 2.3219E-05 17881 20211116_3428_TMUAki_TMT10x_P_F1 99.927 83.5 7967900 13532000 27827 13638000 11440000 13623000 8920200 10901000 10013000 10637000 11200000 7419000 12627000 723830 13905000 10906000 13818000 9213700 11212000 10181000 10399000 10767000 2 2 1 2 2 2 2 2 2 2 2 4034400 6356400 0 6941700 6587800 9469600 5468400 5332000 5042900 5232000 5636700 3756400 5933400 358920 7078100 6287800 9398100 5592200 5627100 5170000 5113900 5419100 1 1 0 1 1 1 1 1 1 1 1 3933500 7175900 27827 6696500 4851700 4153300 3451800 5568600 4970200 5404600 5562900 3662600 6694100 364900 6827400 4618500 4419800 3621500 5585400 5010900 5285200 5348000 1 1 1 1 1 1 1 1 1 1 1 829920000 580770000 249150000 12822 763 11912 67761;67762;67763 81886;81887;81888 81886 3 LTEELAVANNR Unmodified 1228.6412 0.64116473 2050 Q7L099;Q7L099-3;Q7L099-2;Q7L099-4 RUFY3 Protein RUFY3 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 46.543 46.37 2 3.1739E-14 15670 20211116_3441_TMUAki_TMT10x_S_F3 182.39 138.95 2348300 3549400 45176 4118900 3587400 3419100 2731200 3010200 3013500 2580100 3210900 2186800 3314100 254150 4151300 3421000 3517100 2823900 3068400 3060400 2537600 3091400 2 2 2 2 2 2 2 2 2 2 2 989910 1487300 45101 1745600 2079700 2025800 1264600 1247600 1287900 1085600 1299000 922040 1388800 139370 1766800 1976400 2029000 1326000 1302900 1309600 1067000 1252800 1 1 1 1 1 1 1 1 1 1 1 1358400 2062000 75.003 2373300 1507700 1393300 1466600 1762600 1725600 1494500 1911900 1264800 1925300 114780 2384500 1444700 1488100 1497800 1765400 1750800 1470600 1838600 1 1 1 1 1 1 1 1 1 1 1 201980000 108830000 93153000 12823 2050 11913 67764;67765;67766 81889;81890;81891 81891 3 LTEENTTLREQVEPTPEDEDDDIELR Unmodified 3085.4211 0.42112694 2100 Q86TG7;Q86TG7-2 PEG10 Retrotransposon-derived protein PEG10 yes no 0 0 0 1 By MS/MS 1 0 1 1 56.248 55.946 3 2.3881E-19 18518 20211116_3439_TMUAki_TMT10x_S_F1 127.38 121.76 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12824 2100 11914 67767 81892 81892 1 LTEGCSFR Unmodified 968.43857 0.43856552 1015 P42677;Q71UM5 RPS27;RPS27L 40S ribosomal protein S27;40S ribosomal protein S27-like yes no 0 0 0 0 By MS/MS By MS/MS 4 1.2 1 1 3 1 1 2 5 33.574 33.644 2 9.4474E-06 9091 20211116_3431_TMUAki_TMT10x_P_F4 205.13 160.52 7610200 12876000 45087 12786000 10880000 9330300 7975400 6968100 7193800 6280700 9813500 7086100 12015000 700550 12999000 10361000 9665200 8217500 7183300 7445700 6162300 9385700 14 14 6 14 14 14 14 14 14 14 14 2897400 4710000 2817.5 4616400 6233400 5394400 3426300 2588500 2792300 2431900 3725200 2697700 4394600 287680 4727700 5906300 5384400 3602600 2768800 2901500 2381500 3564700 2 2 1 2 2 2 2 2 2 2 2 4712900 8166300 42270 8169700 4647000 3935900 4549200 4379500 4401600 3848800 6088300 4388300 7620000 412870 8270900 4454800 4280700 4614900 4414500 4544100 3780800 5820900 12 12 5 12 12 12 12 12 12 12 12 467320000 336250000 131080000 12825 1015 11915 67768;67769;67770;67771;67772;67773;67774 81893;81894;81895;81896;81897;81898;81899;81900;81901;81902;81903;81904;81905;81906;81907 81893 15 LTEIGPR Unmodified 784.4443 0.44430282 2900 Q9NQ55;Q9NQ55-2;Q9NQ55-3 PPAN Suppressor of SWI4 1 homolog yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 36.765 36.897 2 0.033369 9511 20211116_3442_TMUAki_TMT10x_S_F4 78.149 43.342 485360 734710 0 829160 485760 407910 483220 505190 586250 491610 672010 451920 685910 39778 832900 465670 443720 493470 508330 594940 480690 645610 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 485360 734710 0 829160 485760 407910 483220 505190 586250 491610 672010 451920 685910 39778 832900 465670 443720 493470 508330 594940 480690 645610 1 1 0 1 1 1 1 1 1 1 1 10309000 0 10309000 12826 2900 11916 67775;67776 81908;81909 81909 2 LTEMETLQSQLMAEK 2 Oxidation (M) 1782.838 0.83795156 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 2 0 By MS/MS By MS/MS 4 0 2 1 1 55.701 55.768 3 0.010618 17220 20211116_3442_TMUAki_TMT10x_S_F4 55.815 29.086 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12827 934 11917 67777;67778 81910;81911 81911 1177;1178 2 LTESINRDSEEPFSSVEIQAALSK Unmodified 2649.3134 0.31335481 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 1 By MS/MS By MS/MS 4.14 0.639 1 4 2 4 3 72.385 72.339 3;4 5.7377E-87 22644 20211116_3444_TMUAki_TMT10x_S_F5 268.25 250.38 45116000 77340000 367530 67243000 52254000 67189000 52125000 46573000 42185000 46731000 54733000 42009000 72129000 4114800 69311000 50118000 67987000 52572000 48397000 43796000 45633000 52411000 12 12 7 12 12 12 12 12 12 12 12 23490000 38911000 166690 33392000 20980000 42071000 25828000 23131000 20530000 23374000 27489000 21872000 36288000 2024400 34585000 20245000 41898000 25781000 24481000 21364000 22818000 26302000 5 5 3 5 5 5 5 5 5 5 5 21626000 38429000 200840 33851000 31275000 25118000 26297000 23442000 21655000 23357000 27245000 20137000 35841000 2090400 34727000 29873000 26090000 26791000 23916000 22432000 22815000 26109000 7 7 4 7 7 7 7 7 7 7 7 7148200000 4436500000 2711700000 12828 799 11918 67779;67780;67781;67782;67783;67784;67785 81912;81913;81914;81915;81916;81917;81918;81919;81920;81921;81922;81923 81922 12 LTESPCALVASQYGWSGNMER Oxidation (M) 2371.0573 0.057280243 672 P14625 HSP90B1 Endoplasmin yes yes 0 0 1 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 67.122 67.335 2;3 9.8814E-14 22474 20211116_3435_TMUAki_TMT10x_P_F7 135.21 124.87 7737400 13913000 87225 11356000 10628000 15555000 11060000 12490000 11698000 12426000 11879000 7204300 12973000 694320 11828000 10202000 15519000 11215000 12852000 11879000 12138000 11453000 5 5 2 5 5 5 5 5 5 5 5 4413300 7883000 0 6439800 5364100 10704000 6623500 6841200 6360900 6871500 6630400 4108600 7350300 310280 6735300 5170500 10555000 6644500 7151500 6492100 6709800 6387800 3 3 0 3 3 3 3 3 3 3 3 3324100 6029800 87225 4916300 5264000 4851400 4436100 5648700 5336800 5554200 5248100 3095700 5622300 384050 5093100 5031800 4964200 4570900 5700100 5386700 5428400 5065400 2 2 2 2 2 2 2 2 2 2 2 6253800000 2331900000 3921900000 12829 672 11919 67786;67787;67788;67789 81924;81925;81926;81927;81928 81926 743 5 LTESPCALVASQYGWSGNMER Unmodified 2355.0624 0.06236562 672 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 71.355 71.675 3 8.0238E-27 24710 20211116_3446_TMUAki_TMT10x_S_F7 174.72 163.73 10946000 18662000 548870 18065000 13052000 13835000 13061000 11804000 11474000 11707000 13929000 10196000 17412000 1448500 18408000 12548000 14309000 13199000 12101000 11830000 11438000 13361000 3 3 3 3 3 3 3 3 3 3 3 1665100 2706900 96241 2413400 1533200 3244400 1926300 1713800 1726300 1742100 1854200 1551100 2524700 225890 2495200 1485800 3219500 1927200 1820600 1769500 1700200 1784700 1 1 1 1 1 1 1 1 1 1 1 9281100 15955000 452630 15651000 11519000 10590000 11135000 10090000 9748100 9965400 12075000 8645000 14887000 1222600 15913000 11062000 11090000 11272000 10281000 10060000 9737800 11576000 2 2 2 2 2 2 2 2 2 2 2 2396300000 1007600000 1388700000 12830 672 11919 67790;67791 81929;81930;81931 81930 3 LTETCFLDCVK Unmodified 1384.6367 0.63667298 3319 Q9Y5J7 TIMM9 Mitochondrial import inner membrane translocase subunit Tim9 yes yes 0 0 0 0 By MS/MS 6 0 1 1 65.661 65.657 2 0.00011389 19878 20211116_3434_TMUAki_TMT10x_P_F6 95.483 74.581 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12831 3319 11920 67792 81932 81932 1 LTEVPVEPVLTVHPESK Unmodified 1873.0197 0.019679395 2796 Q9H307 PNN Pinin yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 3 1 60.219 60.33 3 7.6567E-08 17754 20211116_3444_TMUAki_TMT10x_S_F5 111.33 97.579 25069000 44845000 93459 43994000 35518000 49044000 29602000 37861000 37101000 36231000 37867000 23341000 41842000 2148500 45017000 33902000 49400000 30568000 39010000 37443000 35452000 36505000 7 7 3 7 7 7 7 7 7 7 7 15201000 27054000 79807 26709000 24694000 38882000 20630000 22569000 22448000 22075000 22782000 14153000 25243000 1351100 27454000 23573000 38493000 21194000 23755000 22770000 21580000 21966000 4 4 1 4 4 4 4 4 4 4 4 9867600 17791000 13652 17285000 10824000 10162000 8972400 15292000 14652000 14156000 15085000 9187500 16599000 797430 17563000 10330000 10907000 9373700 15255000 14673000 13872000 14539000 3 3 2 3 3 3 3 3 3 3 3 3692900000 2717400000 975550000 12832 2796 11921 67793;67794;67795;67796 81933;81934;81935;81936;81937;81938;81939 81938 7 LTEVQDDKEEEEEENPLLVPLEEK Unmodified 2853.3655 0.36550954 2164 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 3 2 1 75.708 75.682 3;4 3.7866E-60 24487 20211116_3428_TMUAki_TMT10x_P_F1 229.86 215.97 39675000 65895000 131130 60451000 44068000 67827000 48155000 42628000 43005000 44436000 49945000 36939000 61467000 2620100 62164000 42341000 68076000 48472000 44667000 44222000 43324000 47965000 10 10 3 10 10 10 10 10 10 10 10 26624000 41635000 120740 38847000 27758000 51090000 32111000 27407000 28086000 29149000 32485000 24788000 38839000 2111900 40010000 26718000 50760000 32219000 29113000 28905000 28397000 31201000 7 7 2 7 7 7 7 7 7 7 7 13051000 24260000 10396 21604000 16310000 16737000 16044000 15221000 14919000 15286000 17460000 12151000 22628000 508190 22154000 15623000 17316000 16253000 15554000 15317000 14927000 16764000 3 3 1 3 3 3 3 3 3 3 3 5474300000 3355600000 2118700000 12833 2164 11922 67797;67798;67799 81940;81941;81942;81943;81944;81945;81946;81947;81948;81949 81946 10 LTEVSISSDAFFPFRDNVDR Unmodified 2314.123 0.12297527 892 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 1 By matching By MS/MS 5.67 0.471 1 2 1 2 77.333 77.302 3 4.2217E-32 24984 20211116_3445_TMUAki_TMT10x_S_F6 188.04 158.15 17635000 29357000 66390 25761000 23086000 18990000 22751000 17861000 15270000 19410000 21298000 16420000 27379000 1568400 26433000 22129000 19738000 22863000 18263000 16076000 18893000 20358000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17635000 29357000 66390 25761000 23086000 18990000 22751000 17861000 15270000 19410000 21298000 16420000 27379000 1568400 26433000 22129000 19738000 22863000 18263000 16076000 18893000 20358000 3 3 2 3 3 3 3 3 3 3 3 2278900000 1318600000 960230000 12834 892 11923 67800;67801;67802 81950;81951;81952;81953 81952 4 LTFDSSFSPNTGK Unmodified 1399.662 0.66195975 760 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 0 0 0 0 By MS/MS 7 0 2 2 60.083 60.807 2;3 1.4392E-12 19697 20211116_3435_TMUAki_TMT10x_P_F7 127.56 105.69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12835 760 11924 67803;67804 81954;81955 81955 2 LTFDSSFSPNTGKK Unmodified 1527.7569 0.75692277 760 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 3.27 2.93 4 4 3 6 5 53.201 53.081 3;4 1.6453E-37 15200 20211116_3428_TMUAki_TMT10x_P_F1 248.76 221.92 93145000 144890000 1080800 160220000 154450000 150510000 100120000 130340000 131950000 113900000 123840000 86733000 135260000 9311300 162220000 146780000 153470000 105390000 133050000 132560000 111920000 119710000 16 16 10 16 16 16 16 16 16 16 16 60236000 90792000 275750 100520000 122670000 122330000 71328000 80926000 83581000 71221000 76335000 56086000 84755000 5862700 102180000 116330000 122350000 75415000 84079000 84236000 69958000 73862000 9 9 4 9 9 9 9 9 9 9 9 32909000 54102000 805030 59703000 31787000 28173000 28796000 49419000 48371000 42682000 47503000 30648000 50504000 3448700 60040000 30451000 31123000 29971000 48972000 48322000 41963000 45852000 7 7 6 7 7 7 7 7 7 7 7 11802000000 7314300000 4487800000 12836 760 11925 67805;67806;67807;67808;67809;67810;67811;67812;67813;67814;67815 81956;81957;81958;81959;81960;81961;81962;81963;81964;81965;81966;81967;81968;81969;81970;81971 81956 16 LTFDTTFSPNTGK Unmodified 1427.6933 0.69325988 1034 P45880;P45880-2;P45880-1 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 7.43 0.495 4 3 3 4 63.378 63.725 2;3 5.4218E-30 19183 20211116_3447_TMUAki_TMT10x_S_F8 252.51 222.25 40193000 66511000 163920 69936000 49894000 60677000 46059000 47747000 44725000 47332000 50577000 37423000 62075000 3467800 70966000 47744000 62095000 46879000 49186000 45766000 46244000 48609000 8 8 3 8 8 8 8 8 8 8 8 23083000 37545000 139480 39914000 31114000 44245000 28317000 26743000 25655000 26824000 28726000 21493000 35042000 2121100 40616000 29770000 44414000 28787000 28076000 26325000 26194000 27616000 4 4 2 4 4 4 4 4 4 4 4 17110000 28966000 24438 30023000 18780000 16432000 17742000 21004000 19070000 20509000 21851000 15930000 27033000 1346700 30350000 17974000 17681000 18092000 21110000 19441000 20050000 20993000 4 4 1 4 4 4 4 4 4 4 4 6518600000 3691800000 2826800000 12837 1034 11926 67816;67817;67818;67819;67820;67821;67822 81972;81973;81974;81975;81976;81977;81978;81979 81979 8 LTFDTTFSPNTGKK Unmodified 1555.7882 0.7882229 1034 P45880;P45880-2;P45880-1 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 3.92 3.1 4 4 1 4 7 6 55.674 55.561 3;4 9.0212E-30 16211 20211116_3428_TMUAki_TMT10x_P_F1 211.51 193.59 112480000 183240000 1270200 196020000 158100000 165960000 116780000 159200000 140870000 138470000 150450000 104740000 171030000 11005000 198620000 150630000 170770000 121370000 161580000 142600000 136090000 144840000 17 17 13 17 17 17 17 17 17 17 17 57667000 89694000 600650 97313000 100030000 117880000 64220000 81277000 72151000 71567000 74417000 53697000 83723000 5790800 99045000 95045000 117990000 67259000 84193000 73135000 70296000 71717000 9 9 5 9 9 9 9 9 9 9 9 54812000 93545000 669590 98705000 58069000 48087000 52564000 77923000 68723000 66904000 76036000 51041000 87307000 5214000 99574000 55582000 52781000 54106000 77391000 69466000 65796000 73122000 8 8 8 8 8 8 8 8 8 8 8 22306000000 13554000000 8751700000 12838 1034 11927 67823;67824;67825;67826;67827;67828;67829;67830;67831;67832;67833;67834;67835 81980;81981;81982;81983;81984;81985;81986;81987;81988;81989;81990;81991;81992;81993;81994;81995;81996;81997 81981 18 LTFISGR Unmodified 792.44939 0.4493882 1748 Q15005 SPCS2 Signal peptidase complex subunit 2 yes yes 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 49.221 48.976 2 0.0022055 13786 20211116_3440_TMUAki_TMT10x_S_F2 157.9 40.279 6437200 10059000 0 10972000 8920300 8519700 6618800 7221700 7412100 6570500 8086900 5993200 9389700 507220 11092000 8491400 8801400 6858700 7388500 7529800 6444000 7780300 3 3 0 3 3 3 3 3 3 3 3 2852800 4276400 0 4492300 4985000 5150600 2817300 2889500 3205900 2803600 3412700 2656000 3991100 240240 4577500 4723700 5155700 2983100 3049400 3251800 2741700 3285700 1 1 0 1 1 1 1 1 1 1 1 3584400 5782800 0 6479600 3935300 3369100 3801500 4332200 4206200 3766900 4674200 3337200 5398500 266980 6514500 3767700 3645700 3875500 4339200 4278000 3702300 4494500 2 2 0 2 2 2 2 2 2 2 2 492070000 242290000 249780000 12839 1748 11928 67836;67837;67838 81998;81999;82000 81999 3 LTFKYER Unmodified 955.51272 0.51271674 463 P00367;P00367-3;P00367-2;P49448 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 4.5 3.2 2 1 1 2 3 3 40.691 40.808 3 0.034979 9761 20211116_3447_TMUAki_TMT10x_S_F8 62.104 27.718 9383500 13200000 0 14192000 13690000 10373000 8959400 8841000 7310400 7963100 10627000 8736200 12321000 750310 14351000 13002000 10769000 9284200 9040000 7626900 7813400 10148000 4 4 0 4 4 4 4 4 4 4 4 3844800 4993400 0 5548400 6490400 5906500 3254800 3427000 2845800 3085300 4179100 3579600 4661500 320000 5626500 6139600 5939400 3458000 3599200 2960300 3027300 3990200 1 1 0 1 1 1 1 1 1 1 1 5538700 8206700 0 8643500 7199700 4466800 5704500 5414100 4464600 4877800 6447500 5156700 7659400 430310 8724500 6862400 4829400 5826200 5440800 4666600 4786000 6158200 3 3 0 3 3 3 3 3 3 3 3 1186500000 809150000 377350000 12840 463 11929 67839;67840;67841;67842;67843;67844 82001;82002;82003;82004 82004 4 LTFLDLR Unmodified 876.5069 0.50690308 2839 Q9H9A6 LRRC40 Leucine-rich repeat-containing protein 40 yes yes 0 0 0 0 By MS/MS 8 0 1 1 69.632 69.714 2 0.050363 22197 20211116_3436_TMUAki_TMT10x_P_F8 68.915 25.915 1458500 2417200 0 2245100 1803100 3760500 722370 1537800 1366100 1541500 1670700 1358000 2254900 125580 2325200 1701700 3687500 809170 1675800 1372400 1505300 1602200 1 1 0 1 1 1 1 1 1 1 1 1458500 2417200 0 2245100 1803100 3760500 722370 1537800 1366100 1541500 1670700 1358000 2254900 125580 2325200 1701700 3687500 809170 1675800 1372400 1505300 1602200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 305190000 305190000 0 12841 2839 11930 67845 82005 82005 1 LTFLYLANDVIQNSK Unmodified 1737.9301 0.93013611 2905;2529 Q9NQG5;Q96P16;Q96P16-3 RPRD1B;RPRD1A Regulation of nuclear pre-mRNA domain-containing protein 1B;Regulation of nuclear pre-mRNA domain-containing protein 1A no no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 81.198 81.183 3 8.8605E-28 27205 20211116_3431_TMUAki_TMT10x_P_F4 171.76 143.47 1895300 3343400 0 3010300 2096400 1990600 2512300 1691900 2055300 2321400 2295600 1764200 3118500 101530 3079300 2016800 2084100 2512400 1754100 2119400 2241200 2207000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1895300 3343400 0 3010300 2096400 1990600 2512300 1691900 2055300 2321400 2295600 1764200 3118500 101530 3079300 2016800 2084100 2512400 1754100 2119400 2241200 2207000 1 1 0 1 1 1 1 1 1 1 1 728850000 0 728850000 12842 2905;2529 11931 67846;67847 82006;82007 82006 2 LTFSCLGGSDNFK Unmodified 1444.6657 0.66566492 1778 Q15185;Q15185-3;Q15185-4;Q15185-2 PTGES3 Prostaglandin E synthase 3 yes no 0 0 0 0 By MS/MS By MS/MS 6.17 2.41 2 2 4 4 5 7 66.17 66.339 2;3 6.7512E-65 20709 20211116_3436_TMUAki_TMT10x_P_F8 321.7 281.7 84952000 138640000 303040 153750000 94097000 123180000 88293000 105890000 88795000 99270000 109890000 79095000 129430000 6778600 155330000 90053000 126980000 89878000 108330000 91060000 97225000 105350000 14 14 8 14 14 14 14 14 14 14 14 36361000 54921000 12780 63594000 48245000 75116000 44859000 43643000 36026000 40654000 45447000 33852000 51280000 2758100 64436000 46147000 75105000 45406000 45872000 37371000 39828000 43550000 4 4 1 4 4 4 4 4 4 4 4 48591000 83723000 290260 90160000 45852000 48061000 43434000 62246000 52769000 58616000 64442000 45243000 78146000 4020500 90894000 43906000 51877000 44472000 62462000 53689000 57397000 61803000 10 10 7 10 10 10 10 10 10 10 10 21008000000 12298000000 8710600000 12843 1778 11932 67848;67849;67850;67851;67852;67853;67854;67855;67856;67857;67858;67859 82008;82009;82010;82011;82012;82013;82014;82015;82016;82017;82018;82019;82020;82021;82022;82023 82012 16 LTFSGLLNALDGVASTEAR Unmodified 1934.0109 0.010905622 3227 Q9Y276 BCS1L Mitochondrial chaperone BCS1 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 81.662 81.663 3 5.8363E-05 26488 20211116_3447_TMUAki_TMT10x_S_F8 76.704 62.798 731950 1417400 25328 1316600 1112100 901560 910460 944970 835900 798340 1131300 681710 1322200 89614 1344100 1062800 945030 931760 954200 864130 785740 1082200 2 2 2 2 2 2 2 2 2 2 2 258200 426570 6026 466180 268160 424900 289530 259140 255650 260290 311520 240450 398180 27162 472170 258030 431680 291520 271880 263550 254160 298780 1 1 1 1 1 1 1 1 1 1 1 473760 990880 19302 850460 843960 476660 620930 685830 580250 538060 819760 441260 924070 62452 871930 804790 513350 640240 682330 600590 531580 783380 1 1 1 1 1 1 1 1 1 1 1 183240000 145510000 37725000 12844 3227 11933 67860;67861 82024;82025 82025 2 LTGADGTPPGFLLK Unmodified 1385.7555 0.7554662 1502 Q02978;Q02978-2 SLC25A11 Mitochondrial 2-oxoglutarate/malate carrier protein yes no 0 0 0 0 By MS/MS 8 0 1 1 70.291 70.123 3 0.00038147 21828 20211116_3447_TMUAki_TMT10x_S_F8 67.997 43.615 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12845 1502 11934 67862 82026 82026 1 LTGDAFR Unmodified 778.39735 0.39735263 452 O95881 TXNDC12 Thioredoxin domain-containing protein 12 yes yes 0 0 0 0 By MS/MS 4 0 1 1 39.61 39.661 2 0.056138 10278 20211116_3431_TMUAki_TMT10x_P_F4 65.777 8.4421 1038100 1734400 8127.5 1879900 2451500 2270300 1352500 1464300 1476700 1143100 1563700 966650 1619000 113440 1913400 2323500 2270700 1433200 1519800 1500000 1129600 1505800 1 1 1 1 1 1 1 1 1 1 1 1038100 1734400 8127.5 1879900 2451500 2270300 1352500 1464300 1476700 1143100 1563700 966650 1619000 113440 1913400 2323500 2270700 1433200 1519800 1500000 1129600 1505800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 163710000 163710000 0 12846 452 11935 67863 82027 82027 1 LTGEDVFGITVPLITSTTGAK Unmodified 2119.1413 0.14125109 3257 Q9Y2Z4 YARS2 Tyrosine--tRNA ligase, mitochondrial yes yes 0 0 0 0 By MS/MS 8 0 1 1 80.363 80.368 3 1.6238E-26 26548 20211116_3436_TMUAki_TMT10x_P_F8 169.43 154.01 3441700 6324200 98663 5691200 2537900 3801300 3151600 2291400 2681000 2696400 3714000 3205300 5898800 364640 5822400 2454900 3955100 3150200 2418100 2784700 2616800 3550800 1 1 1 1 1 1 1 1 1 1 1 3441700 6324200 98663 5691200 2537900 3801300 3151600 2291400 2681000 2696400 3714000 3205300 5898800 364640 5822400 2454900 3955100 3150200 2418100 2784700 2616800 3550800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1275300000 1275300000 0 12847 3257 11936 67864 82028 82028 1 LTGIKHELQANCYEEVK Unmodified 2031.0095 0.0095254139 787 P23528 CFL1 Cofilin-1 yes yes 0 0 0 1 By MS/MS By MS/MS 6.5 0.957 2 4 4 2 6 6 51.825 52.07 3;4;5 2.5136E-29 14686 20211116_3445_TMUAki_TMT10x_S_F6 188.04 162.99 104720000 175600000 1503000 219230000 179510000 168570000 103660000 92772000 117960000 101570000 133570000 97510000 164020000 10063000 219810000 170290000 173150000 109550000 98413000 119930000 98836000 128370000 18 18 13 18 18 18 18 18 18 18 18 61599000 101230000 979220 124780000 153590000 142490000 79744000 56769000 71185000 61479000 78768000 57361000 94549000 6424200 125900000 145460000 142140000 84484000 62186000 73062000 59849000 75750000 11 11 9 11 11 11 11 11 11 11 11 43117000 74367000 523770 94441000 25927000 26080000 23911000 36004000 46776000 40091000 54801000 40149000 69467000 3638600 93905000 24829000 31008000 25068000 36228000 46870000 38987000 52616000 7 7 4 7 7 7 7 7 7 7 7 22454000000 14785000000 7669500000 12848 787 11937 67865;67866;67867;67868;67869;67870;67871;67872;67873;67874;67875;67876 82029;82030;82031;82032;82033;82034;82035;82036;82037;82038;82039;82040;82041;82042;82043;82044;82045;82046;82047 82043 19 LTGIKHELQANCYEEVKDR Unmodified 2302.1376 0.13757947 787 P23528 CFL1 Cofilin-1 yes yes 0 0 0 2 By MS/MS By MS/MS 6.4 0.917 2 3 4 1 6 4 48.049 48.343 4;5 4.4721E-31 13169 20211116_3445_TMUAki_TMT10x_S_F6 180.13 167.26 37117000 69947000 500000 55694000 99378000 143190000 64227000 139530000 109910000 101520000 83789000 34562000 65215000 4014600 59132000 94430000 140390000 68400000 140910000 108890000 100720000 81637000 16 16 11 16 16 16 16 16 16 16 16 25381000 45793000 388460 37022000 85519000 125260000 54673000 91271000 71684000 66981000 54806000 23635000 42697000 2954000 39708000 81245000 121400000 57596000 93787000 71583000 66418000 53392000 10 10 7 10 10 10 10 10 10 10 10 11736000 24155000 111540 18672000 13860000 17929000 9554200 48256000 38226000 34541000 28983000 10928000 22518000 1060600 19424000 13185000 18992000 10804000 47122000 37305000 34300000 28245000 6 6 4 6 6 6 6 6 6 6 6 12841000000 8226900000 4614200000 12849 787 11938 67877;67878;67879;67880;67881;67882;67883;67884;67885;67886 82048;82049;82050;82051;82052;82053;82054;82055;82056;82057;82058;82059;82060;82061;82062;82063 82060 16 LTGKDVNFEFPEFQL Unmodified 1782.8829 0.88285156 1332 P62081 RPS7 40S ribosomal protein S7 yes yes 0 0 0 1 By MS/MS By MS/MS 6.67 0.745 3 2 1 4 2 60.263 60.264 2;3 0.00022028 27734 20211116_3435_TMUAki_TMT10x_P_F7 81.327 61.197 4020600 7190800 0 5055000 4407000 10403000 5929100 7314900 5998000 5794100 6384700 3743600 6701800 334040 5387800 4263700 10199000 5936700 7547600 6112600 5721500 6147100 2 2 0 2 2 2 2 2 2 2 2 4020600 7190800 0 5055000 4407000 10403000 5929100 7314900 5998000 5794100 6384700 3743600 6701800 334040 5387800 4263700 10199000 5936700 7547600 6112600 5721500 6147100 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5415000000 3161500000 2253400000 12850 1332 11939 67887;67888;67889;67890;67891;67892 82064;82065;82066;82067 82065 4 LTGKPGQVLPHPELCTVR Unmodified 2001.083 0.082965128 1973 Q6GMV2 SMYD5 SET and MYND domain-containing protein 5 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 47.004 46.833 4 9.2981E-06 14338 20211116_3429_TMUAki_TMT10x_P_F2 89.353 70.278 2863900 4158800 3228.1 5030100 4441900 5008700 3069300 3931700 4118500 3425200 4078500 2666300 3883800 222370 5069700 4222200 5079700 3217600 4036600 4142500 3366100 3935700 2 2 1 2 2 2 2 2 2 2 2 1554200 2066300 0 2631900 3282300 3777900 2134100 2084600 2298700 2022600 2186100 1446800 1930200 112880 2662200 3115700 3740000 2229800 2203000 2327400 1977900 2112300 1 1 0 1 1 1 1 1 1 1 1 1309700 2092500 3228.1 2398200 1159600 1230800 935230 1847100 1819700 1402600 1892500 1219500 1953600 109490 2407500 1106400 1339700 987760 1833600 1815200 1388200 1823400 1 1 1 1 1 1 1 1 1 1 1 274200000 172870000 101320000 12851 1973 11940 67893;67894 82068;82069 82068 2 LTGMAFR Oxidation (M) 810.40581 0.40580882 489 P04406;P04406-2;O14556 GAPDH;GAPDHS Glyceraldehyde-3-phosphate dehydrogenase;Glyceraldehyde-3-phosphate dehydrogenase, testis-specific yes no 0 0 1 0 By MS/MS By MS/MS 4.64 2.41 2 2 1 1 2 2 2 2 8 6 35.218 35.362 2 0.043939 10191 20211116_3429_TMUAki_TMT10x_P_F2 76.847 30.044 48512000 81914000 728250 74874000 62685000 66192000 48459000 51311000 54683000 46267000 62140000 45173000 76408000 3602300 76751000 59777000 67633000 50091000 52770000 55623000 45394000 59713000 21 21 7 21 21 21 21 21 21 21 21 21782000 35002000 661490 34286000 39388000 44937000 26209000 22404000 22190000 20151000 28545000 20285000 32657000 2526600 35187000 37467000 44615000 27150000 23848000 22976000 19774000 27340000 12 12 5 12 12 12 12 12 12 12 12 26730000 46912000 66752 40589000 23297000 21255000 22250000 28907000 32493000 26115000 33595000 24888000 43750000 1075700 41565000 22310000 23018000 22941000 28921000 32647000 25621000 32373000 9 9 2 9 9 9 9 9 9 9 9 11483000000 6628200000 4855100000 12852 489 11941 67895;67896;67897;67898;67899;67900;67901;67902;67903;67904;67905;67906;67907;67908 82070;82071;82072;82073;82074;82075;82076;82077;82078;82079;82080;82081 82073 388 12 LTGMAFR Unmodified 794.41089 0.4108942 489 P04406;P04406-2;O14556 GAPDH;GAPDHS Glyceraldehyde-3-phosphate dehydrogenase;Glyceraldehyde-3-phosphate dehydrogenase, testis-specific yes no 0 0 0 0 By MS/MS By MS/MS 4.2 2.79 2 2 2 2 2 5 5 47.226 47.158 2 0.0019198 14426 20211116_3429_TMUAki_TMT10x_P_F2 153.38 126.26 95780000 144290000 130110 155420000 118910000 87086000 88947000 36943000 27350000 42225000 92051000 89164000 134680000 6113900 156750000 113120000 91806000 89882000 40249000 32815000 41022000 86795000 10 10 1 10 10 10 10 10 10 10 10 46676000 69647000 130110 73756000 84531000 63084000 53936000 18337000 13488000 21141000 44442000 43453000 65003000 3476100 74794000 80223000 63919000 55057000 20986000 16590000 20532000 41914000 5 5 1 5 5 5 5 5 5 5 5 49104000 74642000 0 81664000 34376000 24002000 35011000 18606000 13862000 21084000 47609000 45711000 69675000 2637800 81952000 32898000 27887000 34825000 19264000 16225000 20490000 44882000 5 5 0 5 5 5 5 5 5 5 5 11058000000 6249800000 4808200000 12853 489 11941 67909;67910;67911;67912;67913;67914;67915;67916;67917;67918 82082;82083;82084;82085;82086;82087;82088;82089;82090;82091;82092 82085 11 LTGMAFRVPTANVSVVDLTCR Oxidation (M) 2322.1824 0.18242118 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 1 1 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 66.699 66.471 3 2.9014E-19 22815 20211116_3430_TMUAki_TMT10x_P_F3 150.63 142.08 27988000 45932000 80846 40835000 60906000 45338000 29656000 57291000 42330000 37341000 41691000 26060000 42841000 1910500 42086000 57616000 46178000 32107000 57049000 42486000 37291000 40238000 9 9 4 9 9 9 9 9 9 9 9 13956000 22736000 43295 19875000 14437000 31546000 16308000 26633000 19929000 17760000 20292000 12995000 21204000 1200700 20652000 13892000 31307000 16557000 27061000 20128000 17711000 19564000 5 5 3 5 5 5 5 5 5 5 5 14032000 23196000 37551 20960000 46469000 13791000 13347000 30658000 22401000 19581000 21399000 13065000 21636000 709820 21434000 43724000 14871000 15551000 29988000 22357000 19580000 20674000 4 4 1 4 4 4 4 4 4 4 4 9319900000 4946500000 4373400000 12854 489 11942 67919;67920;67921;67922;67923;67924 82093;82094;82095;82096;82097;82098;82099;82100;82101 82095 388 9 LTGMAFRVPTANVSVVDLTCR Unmodified 2306.1875 0.18750655 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 72.944 72.936 3 1.8012E-19 24040 20211116_3433_TMUAki_TMT10x_P_F5 153.65 128.09 81087000 126330000 3250000 137820000 120600000 112360000 86598000 83440000 70212000 85841000 106370000 75524000 117920000 10305000 139410000 114980000 115390000 89111000 86368000 73429000 83738000 101490000 8 8 8 8 8 8 8 8 8 8 8 35712000 51985000 1467100 58712000 43699000 69488000 45133000 34573000 27618000 34976000 45714000 33262000 48532000 4439900 59582000 42026000 69340000 45163000 36926000 29506000 34143000 43538000 4 4 4 4 4 4 4 4 4 4 4 45374000 74344000 1782900 79111000 76904000 42876000 41465000 48867000 42593000 50864000 60659000 42261000 69388000 5865100 79828000 72957000 46049000 43947000 49442000 43923000 49594000 57956000 4 4 4 4 4 4 4 4 4 4 4 3876100000 1761900000 2114200000 12855 489 11942 67925;67926;67927;67928 82102;82103;82104;82105;82106;82107;82108;82109 82104 8 LTGVFAPRPSTGPHK Unmodified 1563.8522 0.85216056 1362 P62701;Q8TD47 RPS4X;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2 no no 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 39.218 39.445 4 1.332E-06 11178 20211116_3435_TMUAki_TMT10x_P_F7 111.78 78.581 712810 1154200 27126 1437000 1680200 1579900 955900 974660 1074500 862650 1076400 663900 1078100 97926 1448100 1594500 1587100 1011200 1018200 1088000 847120 1038300 2 2 2 2 2 2 2 2 2 2 2 712810 1154200 27126 1437000 1680200 1579900 955900 974660 1074500 862650 1076400 663900 1078100 97926 1448100 1594500 1587100 1011200 1018200 1088000 847120 1038300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 63083000 63083000 0 12856 1362 11943 67929;67930 82110;82111 82111 2 LTHDVELNLDYER Unmodified 1615.7842 0.78420015 480 P02786 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes yes 0 0 0 0 By MS/MS By MS/MS 2.83 1.07 1 1 2 2 2 4 51.521 51.41 3 2.328E-19 15373 20211116_3442_TMUAki_TMT10x_S_F4 187.62 164.25 15284000 25860000 91685 28360000 24552000 28239000 19055000 22897000 21803000 19049000 22333000 14232000 24139000 1470500 28753000 23409000 28655000 19701000 23434000 22079000 18763000 21527000 8 8 5 8 8 8 8 8 8 8 8 8992700 15200000 49176 16376000 18764000 22530000 13331000 14659000 13824000 11762000 13668000 8373400 14188000 916360 16715000 17857000 22395000 13822000 15215000 14036000 11607000 13190000 4 4 1 4 4 4 4 4 4 4 4 6291500 10660000 42509 11984000 5788500 5709100 5723800 8238000 7978600 7287200 8665300 5858300 9951500 554180 12038000 5551200 6259900 5879100 8219800 8042500 7156200 8337800 4 4 4 4 4 4 4 4 4 4 4 2325400000 807190000 1518200000 12857 480 11944 67931;67932;67933;67934;67935;67936 82112;82113;82114;82115;82116;82117;82118;82119 82119 8 LTHNEFTITHVIVPK Unmodified 1747.9621 0.96210494 2460 Q96FJ0;Q96FJ0-2 STAMBPL1 AMSH-like protease yes no 0 0 0 0 By matching By MS/MS 8 0 2 1 1 52.334 52.334 4 0.0010228 14572 20211116_3447_TMUAki_TMT10x_S_F8 68.283 47.443 1787900 3148000 69315 2846700 1896400 1471400 1715600 2582200 2369000 2379200 2294600 1665200 2936300 214350 2904800 1818000 1608800 1769900 2563200 2378800 2332000 2215800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1787900 3148000 69315 2846700 1896400 1471400 1715600 2582200 2369000 2379200 2294600 1665200 2936300 214350 2904800 1818000 1608800 1769900 2563200 2378800 2332000 2215800 1 1 1 1 1 1 1 1 1 1 1 329820000 203850000 125970000 12858 2460 11945 67937;67938 82120 82120 1 LTHYDHVLIELTQAGLK Unmodified 1950.0575 0.057461885 1716 Q14566 MCM6 DNA replication licensing factor MCM6 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 70.155 70.312 4 2.6464E-15 21938 20211116_3447_TMUAki_TMT10x_S_F8 143.93 123.26 22252000 38587000 251820 37728000 24926000 35221000 27358000 25124000 23910000 26468000 26338000 20720000 36002000 2008900 38512000 23969000 35809000 27516000 26094000 24561000 25795000 25332000 6 6 4 6 6 6 6 6 6 6 6 11158000 19127000 136570 18412000 11748000 22345000 13538000 12571000 11524000 13390000 12707000 10391000 17845000 1060600 18893000 11318000 22301000 13577000 13299000 11854000 13044000 12221000 3 3 3 3 3 3 3 3 3 3 3 11094000 19460000 115250 19316000 13177000 12877000 13819000 12553000 12386000 13078000 13632000 10329000 18158000 948250 19619000 12651000 13508000 13940000 12795000 12707000 12751000 13111000 3 3 1 3 3 3 3 3 3 3 3 2642500000 1347300000 1295200000 12859 1716 11946 67939;67940;67941;67942 82121;82122;82123;82124;82125;82126 82125 6 LTIAEER Unmodified 830.44978 0.44978213 1362 P62701;Q8TD47 RPS4X;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2 yes no 0 0 0 0 By MS/MS By MS/MS 2.25 1.09 1 2 1 1 3 35.78 35.75 2 0.0017059 8484 20211116_3442_TMUAki_TMT10x_S_F4 149.99 37.401 5743500 9088900 13960 8416700 7266600 8172900 6407400 5304800 5674700 5593900 6745300 5347200 8478400 420250 8630300 6940900 8276600 6521500 5547000 5843100 5451400 6473800 4 4 2 4 4 4 4 4 4 4 4 3280200 5082500 0 4679200 4645600 5976500 3784800 2971200 3192900 3211600 3607500 3053600 4741000 222400 4821500 4428300 5940900 3865800 3179800 3288800 3126700 3467200 1 1 0 1 1 1 1 1 1 1 1 2463400 4006400 13960 3737500 2621000 2196400 2622600 2333600 2481800 2382300 3137800 2293600 3737400 197850 3808800 2512600 2335700 2655800 2367200 2554200 2324700 3006600 3 3 2 3 3 3 3 3 3 3 3 618510000 350210000 268300000 12860 1362 11947 67943;67944;67945;67946 82127;82128;82129;82130 82130 4 LTIAEERDK Unmodified 1073.5717 0.57168818 1362 P62701;Q8TD47 RPS4X;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2 yes no 0 0 0 1 By MS/MS By MS/MS 4 0.816 1 1 1 1 2 35.071 35.058 3 0.00057465 11058 20211116_3441_TMUAki_TMT10x_S_F3 103.34 71.581 4534600 6697300 63720 8639800 4920500 4022100 4020500 2602900 2927200 2698500 4846300 4222700 6256600 440740 8607800 4699200 4350400 4091400 2720900 3093900 2631500 4615700 4 4 4 4 4 4 4 4 4 4 4 2075700 2958500 21872 3839400 3253200 2531400 1829000 1005700 1170800 1134900 2035000 1932800 2763900 208960 3835100 3084900 2625200 1909300 1103400 1250600 1103100 1936400 1 1 1 1 1 1 1 1 1 1 1 2459000 3738800 41849 4800400 1667300 1490700 2191500 1597200 1756400 1563500 2811300 2289900 3492700 231780 4772700 1614400 1725200 2182100 1617600 1843300 1528400 2679300 3 3 3 3 3 3 3 3 3 3 3 99806000 68968000 30838000 12861 1362 11948 67947;67948;67949 82131;82132;82133 82132 3 LTIEFTEEYPNKPPTVR Unmodified 2033.047 0.046956778 1102 P49459 UBE2A Ubiquitin-conjugating enzyme E2 A yes yes 0 0 0 1 By MS/MS By MS/MS 6.43 1.05 2 1 3 1 2 5 73.266 73.281 3 3.5418E-16 18807 20211116_3433_TMUAki_TMT10x_P_F5 144.33 118.19 10665000 18316000 62032 18739000 12810000 11532000 12286000 11451000 11652000 13093000 13708000 9929900 17093000 935170 18980000 12271000 12191000 12470000 11696000 11954000 12720000 13160000 7 7 4 7 7 7 7 7 7 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10665000 18316000 62032 18739000 12810000 11532000 12286000 11451000 11652000 13093000 13708000 9929900 17093000 935170 18980000 12271000 12191000 12470000 11696000 11954000 12720000 13160000 7 7 4 7 7 7 7 7 7 7 7 729950000 0 729950000 12862 1102 11949 67950;67951;67952;67953;67954;67955;67956 82134;82135;82136;82137;82138;82139;82140;82141;82142;82143;82144;82145 82134 12 LTIELHPDGR Unmodified 1149.6142 0.6142217 1814 Q15545 TAF7 Transcription initiation factor TFIID subunit 7 yes yes 0 0 0 0 By MS/MS 4 0 1 1 43.015 43.23 3 0.068289 12060 20211116_3442_TMUAki_TMT10x_S_F4 36.955 20.752 774540 1282500 0 1400800 911720 769250 727780 1213300 843420 955450 1226100 721170 1197200 65850 1411200 869560 832590 751410 1203400 866550 943760 1170900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 774540 1282500 0 1400800 911720 769250 727780 1213300 843420 955450 1226100 721170 1197200 65850 1411200 869560 832590 751410 1203400 866550 943760 1170900 1 1 0 1 1 1 1 1 1 1 1 46855000 0 46855000 12863 1814 11950 67957 82146 82146 1 LTIGSNLSIR Unmodified 1072.6241 0.6240581 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 4.42 2.22 1 2 1 3 2 1 2 5 7 54.711 54.666 2 3.1137E-15 19009 20211116_3441_TMUAki_TMT10x_S_F3 237.44 163.78 10603000 17405000 34517 17636000 15455000 19464000 12691000 14804000 13545000 13754000 14156000 9872600 16242000 919640 18003000 14748000 19611000 13044000 15255000 13764000 13476000 13636000 3 3 1 3 3 3 3 3 3 3 3 7148900 11458000 34517 11768000 11297000 16309000 9673000 9842200 9237200 9124600 9335900 6656500 10693000 676880 12052000 10793000 16189000 9883200 10312000 9419800 8941100 9003000 2 2 1 2 2 2 2 2 2 2 2 3454500 5946700 0 5867900 4158200 3155200 3018500 4961700 4307500 4629600 4819600 3216100 5548600 242760 5951200 3955000 3422200 3161300 4943600 4343900 4535200 4633400 1 1 0 1 1 1 1 1 1 1 1 1251600000 795820000 455760000 12864 648 11951 67958;67959;67960;67961;67962;67963;67964;67965;67966;67967;67968;67969 82147;82148;82149;82150;82151;82152;82153;82154;82155;82156;82157 82153 11 LTIHAPPQELGPPVQR Unmodified 1751.9683 0.96825295 641 P12270 TPR Nucleoprotein TPR yes yes 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 46.884 47.29 3 4.0738E-08 14247 20211116_3435_TMUAki_TMT10x_P_F7 118.52 98.756 11259000 18514000 107890 22654000 16423000 18726000 12462000 19158000 18413000 17144000 17592000 10483000 17291000 1028800 22760000 15649000 19329000 13032000 19397000 18442000 16827000 16996000 5 5 3 5 5 5 5 5 5 5 5 4869000 7395500 0 10025000 10340000 12972000 7408200 9180200 8411600 8562600 7967800 4532900 6910600 402750 10086000 9835400 12948000 7698800 9506700 8497700 8388200 7699900 2 2 0 2 2 2 2 2 2 2 2 6390000 11119000 107890 12629000 6083800 5753900 5053700 9978300 10001000 8581500 9624000 5950500 10381000 626040 12674000 5814000 6380600 5333200 9890200 9944700 8438700 9295600 3 3 3 3 3 3 3 3 3 3 3 1169500000 584110000 585370000 12865 641 11952 67970;67971;67972 82158;82159;82160;82161;82162 82158 5 LTIHGDLYYEGK Unmodified 1407.7034 0.70343063 1633 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 1.12 2 2 2 2 4 4 50.026 50.179 3 5.0922E-08 15937 20211116_3446_TMUAki_TMT10x_S_F7 113.65 82.777 24233000 39364000 261140 41842000 31570000 34124000 27079000 24786000 26282000 25036000 29480000 22565000 36740000 2355200 42396000 30173000 35030000 27677000 25679000 26886000 24441000 28339000 6 6 6 6 6 6 6 6 6 6 6 13043000 20471000 178330 22963000 19037000 23495000 14595000 13000000 13670000 13293000 14885000 12145000 19111000 1331500 23258000 18153000 23666000 15008000 13756000 13991000 12970000 14322000 3 3 3 3 3 3 3 3 3 3 3 11190000 18893000 82805 18880000 12532000 10629000 12483000 11786000 12612000 11743000 14595000 10420000 17629000 1023700 19138000 12020000 11363000 12669000 11923000 12895000 11471000 14018000 3 3 3 3 3 3 3 3 3 3 3 5123600000 2765800000 2357800000 12866 1633 11953 67973;67974;67975;67976;67977;67978;67979;67980 82163;82164;82165;82166;82167;82168;82169;82170 82170 8 LTIIVSDPSHCNVLR Unmodified 1722.9087 0.90868916 1427 P78346;P78346-2 RPP30 Ribonuclease P protein subunit p30 yes no 0 0 0 0 By MS/MS 8 0 1 1 56.303 56.452 3 8.0797E-05 16728 20211116_3436_TMUAki_TMT10x_P_F8 82.578 67.888 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12867 1427 11954 67981 82171 82171 1 LTKEDEQQQALQDIASR Unmodified 1971.9861 0.98614743 1129 P49916;P49916-3;P49916-4;P49916-2 LIG3 DNA ligase 3 yes no 0 0 0 1 By MS/MS By MS/MS 3.57 0.728 4 2 1 5 2 49.066 49.084 3 3.8416E-36 16728 20211116_3441_TMUAki_TMT10x_S_F3 212.41 189.43 16386000 26767000 56234 29759000 25305000 27548000 16232000 25513000 25020000 22522000 24699000 15256000 24988000 1360300 30114000 24027000 28154000 17211000 25953000 25058000 22119000 23836000 7 7 2 7 7 7 7 7 7 7 7 7894200 12823000 0 14356000 18401000 21356000 11423000 11528000 11931000 10294000 11511000 7349900 11971000 753520 14642000 17465000 21104000 11967000 12180000 12101000 10105000 11118000 3 3 0 3 3 3 3 3 3 3 3 8491700 13944000 56234 15403000 6903800 6191400 4808700 13985000 13089000 12228000 13188000 7906000 13017000 606760 15473000 6562100 7050700 5243600 13773000 12957000 12014000 12719000 4 4 2 4 4 4 4 4 4 4 4 3154900000 2106700000 1048200000 12868 1129 11955 67982;67983;67984;67985;67986;67987;67988 82172;82173;82174;82175;82176;82177;82178;82179;82180 82177 9 LTKIEGLQNLVNLR Unmodified 1609.9515 0.95154025 1807 Q15435;Q15435-2;Q15435-5;Q15435-4;Q15435-3 PPP1R7 Protein phosphatase 1 regulatory subunit 7 yes no 0 0 0 1 By MS/MS 4 0 1 1 71.866 71.712 3 0.045797 23752 20211116_3442_TMUAki_TMT10x_S_F4 45.438 26.842 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12869 1807 11956 67989 82181 82181 1 LTLAELNQILYR Unmodified 1445.8242 0.82421447 933 P35573;P35573-2;P35573-3 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes no 0 0 0 0 By matching By MS/MS 2 0 2 1 1 79.014 78.987 2 6.5994E-06 26077 20211116_3440_TMUAki_TMT10x_S_F2 114.45 62.728 5288100 8638800 101080 7576800 6145200 6137700 6456900 4231300 4677900 5122500 6232000 4924500 8057000 544630 7783100 5906300 6298600 6478100 4424900 4892000 4966200 5963700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5288100 8638800 101080 7576800 6145200 6137700 6456900 4231300 4677900 5122500 6232000 4924500 8057000 544630 7783100 5906300 6298600 6478100 4424900 4892000 4966200 5963700 1 1 1 1 1 1 1 1 1 1 1 1546500000 704270000 842250000 12870 933 11957 67990;67991 82182 82182 1 LTLDKLDVK Unmodified 1043.6227 0.62266112 473 P00558 PGK1 Phosphoglycerate kinase 1 yes yes 0 0 0 1 By MS/MS 6 0 1 1 55.82 55.907 3 0.0014035 15863 20211116_3434_TMUAki_TMT10x_P_F6 79.659 38.259 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12871 473 11958 67992 82183 82183 1 LTLDSEEEGPLEECLAYLTAR Unmodified 2408.1417 0.14172138 2250 Q8NFF5;Q8NFF5-3;Q8NFF5-2;Q8NFF5-4;Q8NFF5-5 FLAD1 FAD synthase;Molybdenum cofactor biosynthesis protein-like region;FAD synthase region yes no 0 0 0 0 By MS/MS 1 0 1 1 79.97 79.97 3 3.4361E-19 26300 20211116_3428_TMUAki_TMT10x_P_F1 141.97 127.04 1930100 2677600 34835 2775400 1766400 3237100 1994300 1939200 1745200 1987000 2010700 1797400 2498900 190190 2831400 1701600 3240100 2003300 2038600 1795800 1938600 1931400 1 1 1 1 1 1 1 1 1 1 1 1930100 2677600 34835 2775400 1766400 3237100 1994300 1939200 1745200 1987000 2010700 1797400 2498900 190190 2831400 1701600 3240100 2003300 2038600 1795800 1938600 1931400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 454700000 454700000 0 12872 2250 11959 67993 82184 82184 1 LTLDTIFVPNTGKK Unmodified 1545.8766 0.87664397 3228 Q9Y277;Q9Y277-2 VDAC3 Voltage-dependent anion-selective channel protein 3 yes no 0 0 0 1 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 67.421 67.101 3 3.7513E-09 23127 20211116_3430_TMUAki_TMT10x_P_F3 126.56 110.67 48235000 84084000 1519200 91826000 51807000 65264000 53856000 52991000 47352000 55386000 63474000 44923000 78489000 5464900 92734000 49818000 67849000 54320000 54569000 49029000 53994000 60732000 5 5 5 5 5 5 5 5 5 5 5 18191000 28678000 409410 31229000 23949000 33206000 22619000 19058000 16715000 19440000 22363000 16940000 26770000 1970300 31708000 22955000 33388000 22831000 20102000 17463000 18971000 21398000 2 2 2 2 2 2 2 2 2 2 2 30045000 55406000 1109800 60597000 27858000 32059000 31237000 33933000 30638000 35945000 41111000 27983000 51719000 3494600 61025000 26863000 34461000 31490000 34466000 31566000 35023000 39334000 3 3 3 3 3 3 3 3 3 3 3 6452700000 3350900000 3101700000 12873 3228 11960 67994;67995;67996;67997;67998 82185;82186;82187;82188;82189;82190 82187 6 LTLFVNGQPRPLESSQVK Unmodified 2012.1055 0.10547471 2360 Q92734;Q92734-2;Q92734-4;Q92734-3 TFG Protein TFG yes no 0 0 0 1 By MS/MS 3 0 1 1 60.368 59.949 3 3.6878E-12 21175 20211116_3441_TMUAki_TMT10x_S_F3 132.87 101.91 3005200 5163800 98493 5664000 3825600 2890400 2962100 4183400 3508100 3637300 4205900 2798900 4820200 352430 5701400 3652400 3144600 3066600 4171800 3569700 3574900 4035600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3005200 5163800 98493 5664000 3825600 2890400 2962100 4183400 3508100 3637300 4205900 2798900 4820200 352430 5701400 3652400 3144600 3066600 4171800 3569700 3574900 4035600 1 1 1 1 1 1 1 1 1 1 1 383890000 0 383890000 12874 2360 11961 67999 82191 82191 1 LTLHGLQQYYVK Unmodified 1461.798 0.79799972 1665;63 O00148;O00148-2;Q13838;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B no no 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 57.959 57.782 3 4.7625E-09 19239 20211116_3430_TMUAki_TMT10x_P_F3 144.1 125.69 53132000 83579000 304030 113060000 59214000 60749000 51358000 42589000 40479000 40707000 57943000 49471000 78099000 4391400 112470000 56573000 64705000 52168000 44161000 42277000 39834000 55355000 8 8 4 8 8 8 8 8 8 8 8 24922000 39829000 264330 52711000 37866000 44269000 29562000 22504000 20528000 20722000 27787000 23205000 37213000 2234400 52738000 36098000 45130000 30140000 23926000 21537000 20312000 26580000 4 4 2 4 4 4 4 4 4 4 4 28210000 43750000 39702 60346000 21348000 16479000 21796000 20084000 19951000 19985000 30156000 26266000 40885000 2157100 59734000 20475000 19575000 22028000 20236000 20740000 19522000 28775000 4 4 2 4 4 4 4 4 4 4 4 7478000000 4492100000 2985800000 12875 63;1665 11962 68000;68001;68002;68003;68004;68005 82192;82193;82194;82195;82196;82197;82198;82199 82193 8 LTLHVGDGFEFMK Oxidation (M) 1508.7334 0.73335055 735 P19623 SRM Spermidine synthase yes yes 0 0 1 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 63.17 63.549 3 8.3005E-05 21354 20211116_3446_TMUAki_TMT10x_S_F7 92.906 71.655 23533000 40289000 218320 31479000 34835000 41597000 22128000 27194000 23138000 27372000 28608000 21913000 37561000 1871400 32209000 33095000 41429000 22510000 28381000 23689000 26726000 27428000 4 4 3 3 4 4 3 4 4 4 4 11591000 19403000 147440 11668000 21261000 29526000 9225400 12944000 9204400 12969000 13143000 10793000 18076000 792390 12038000 20092000 28605000 9355300 13998000 9504600 12665000 12557000 2 2 1 1 2 2 1 2 2 2 2 11942000 20886000 70876 19811000 13574000 12071000 12903000 14250000 13934000 14403000 15465000 11120000 19485000 1079000 20171000 13003000 12824000 13155000 14383000 14184000 14060000 14871000 2 2 2 2 2 2 2 2 2 2 2 2438200000 1235600000 1202600000 12876 735 11963 68006;68007;68008 82200;82201;82202;82203 82202 842 4 LTLHVGDGFEFMK Unmodified 1492.7384 0.73843593 735 P19623 SRM Spermidine synthase yes yes 0 0 0 0 By matching By MS/MS 7 0 2 1 1 69.734 70.094 3 6.2034E-05 24078 20211116_3446_TMUAki_TMT10x_S_F7 95.428 80.284 3564800 6029600 78193 6049800 4567800 3550500 4327300 3803200 3244600 3422800 4305300 3319700 5626300 382460 6133000 4378500 3776900 4368400 3842700 3385800 3358600 4120300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3564800 6029600 78193 6049800 4567800 3550500 4327300 3803200 3244600 3422800 4305300 3319700 5626300 382460 6133000 4378500 3776900 4368400 3842700 3385800 3358600 4120300 1 1 1 1 1 1 1 1 1 1 1 1014900000 571440000 443440000 12877 735 11963 68009;68010 82204 82204 1 LTLIDPETLLPR Unmodified 1379.8024 0.8024164 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.71 1.03 1 2 2 2 4 3 79.496 79.501 2 1.1166E-16 28059 20211116_3446_TMUAki_TMT10x_S_F7 211.31 154.88 51220000 83416000 75512 80663000 52466000 69167000 60909000 39282000 33685000 46225000 56326000 47687000 77826000 3814900 82312000 50490000 70501000 60499000 41656000 36263000 44860000 53635000 9 9 3 9 9 9 9 9 9 9 9 24924000 38043000 72984 36916000 22939000 40135000 27295000 19888000 17292000 22567000 27097000 23206000 35494000 1932500 37788000 22098000 40234000 27149000 21323000 18377000 21929000 25836000 5 5 2 5 5 5 5 5 5 5 5 26296000 45373000 2527.9 43747000 29527000 29032000 33614000 19394000 16393000 23659000 29228000 24481000 42332000 1882400 44524000 28392000 30267000 33349000 20333000 17886000 22931000 27798000 4 4 1 4 4 4 4 4 4 4 4 9250600000 4592400000 4658200000 12878 2116 11964 68011;68012;68013;68014;68015;68016;68017 82205;82206;82207;82208;82209;82210;82211;82212;82213 82211 9 LTLLNPK Unmodified 797.50109 0.50108942 1200 P53396;P53396-2 ACLY ATP-citrate synthase yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 56.282 56.05 2 0.0025497 18050 20211116_3429_TMUAki_TMT10x_P_F2 124.59 18.179 12559000 18982000 129040 19972000 20056000 18367000 13238000 16683000 16591000 15091000 16640000 11694000 17716000 1266500 20281000 19067000 18772000 13888000 17000000 16734000 14805000 16051000 2 2 2 2 2 2 2 2 2 2 2 6716300 9517300 91555 9986000 13847000 13329000 7730900 8398000 8726200 7607800 8450500 6254300 8882400 742020 10204000 13129000 13262000 8192400 8763700 8824100 7462700 8160400 1 1 1 1 1 1 1 1 1 1 1 5842200 9464800 37489 9986000 6208800 5038300 5507300 8285400 7865000 7483600 8189700 5439900 8833700 524430 10077000 5937900 5510800 5696000 8236100 7909600 7341900 7890300 1 1 1 1 1 1 1 1 1 1 1 962590000 568140000 394460000 12879 1200 11965 68018;68019 82214;82215 82214 2 LTLPHSIR Unmodified 935.55525 0.55525025 377 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.14 3.09 2 2 1 2 4 3 38.377 38.452 3 1.163E-06 9437 20211116_3428_TMUAki_TMT10x_P_F1 214.25 167.26 1134500 1763500 29594 2006900 2306500 2120000 1518300 1436200 1658200 1422200 1635100 1056500 1646400 134110 2031900 2193300 2137400 1585600 1494300 1680000 1389500 1578100 6 6 5 6 6 6 6 6 6 6 6 655520 1030200 9923.1 1161100 1808200 1637000 974430 856880 985850 855860 950100 610400 961750 75800 1182400 1713200 1620800 1032400 910560 1001200 835920 917630 3 3 2 3 3 3 3 3 3 3 3 478980 733280 19671 845830 498280 483040 543850 579300 672380 566310 685020 446120 684650 58313 849520 480110 516630 553250 583750 678860 553630 660420 3 3 3 3 3 3 3 3 3 3 3 579670000 328450000 251210000 12880 377 11966 68020;68021;68022;68023;68024;68025;68026 82216;82217;82218;82219;82220;82221;82222 82216 7 LTLQPVDNSTISLQMGTNK Unmodified 2059.062 0.061954915 1802 Q15417;Q15417-3;Q15417-2 CNN3 Calponin-3 yes no 0 0 0 0 By MS/MS By MS/MS 6 2.61 1 1 1 2 4 1 71.004 71.05 3 2.86E-32 22691 20211116_3436_TMUAki_TMT10x_P_F8 196.65 173.17 42560000 66880000 477180 66399000 43664000 59474000 47385000 35622000 35626000 39249000 48064000 39630000 62404000 3799000 67669000 41978000 60479000 47506000 37531000 37199000 38183000 45980000 12 12 8 12 12 12 12 12 12 12 12 28407000 43468000 344780 43514000 27575000 46301000 31616000 23921000 24328000 26558000 32028000 26452000 40560000 2591200 44430000 26558000 46494000 31632000 25529000 25342000 25829000 30658000 8 8 6 8 8 8 8 8 8 8 8 14153000 23412000 132400 22885000 16090000 13172000 15769000 11702000 11298000 12691000 16036000 13178000 21844000 1207800 23238000 15420000 13985000 15874000 12001000 11857000 12354000 15323000 4 4 2 4 4 4 4 4 4 4 4 4693000000 3659400000 1033500000 12881 1802 11967 68027;68028;68029;68030;68031 82223;82224;82225;82226;82227;82228;82229;82230;82231;82232 82227 10 LTLQPVDNSTISLQMGTNK Oxidation (M) 2075.0569 0.056869537 1802 Q15417;Q15417-3;Q15417-2 CNN3 Calponin-3 yes no 0 0 1 0 By MS/MS By MS/MS 6.86 0.639 2 4 1 3 4 63.017 63.316 2;3 1.035E-21 21348 20211116_3446_TMUAki_TMT10x_S_F7 150.22 128.97 20298000 35038000 291490 32915000 24227000 31401000 19843000 24246000 25787000 21730000 24563000 18902000 32686000 1492600 33706000 23138000 31921000 20541000 24938000 25930000 21326000 23733000 8 8 7 8 8 8 8 8 8 8 8 9393300 14667000 101020 14982000 12042000 19695000 9071500 11000000 12546000 8516400 9545100 8746900 13687000 393030 15333000 11478000 19578000 9464500 11548000 12505000 8419900 9300700 3 3 2 3 3 3 3 3 3 3 3 10905000 20370000 190470 17932000 12185000 11705000 10771000 13246000 13240000 13213000 15018000 10155000 18999000 1099500 18373000 11660000 12343000 11076000 13389000 13425000 12906000 14432000 5 5 5 5 5 5 5 5 5 5 5 7078200000 3842300000 3235900000 12882 1802 11967 68032;68033;68034;68035;68036;68037;68038 82233;82234;82235;82236;82237;82238;82239;82240;82241 82240 2425 9 LTLSALLDGK Unmodified 1029.607 0.60701105 760 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.25 2.7 4 2 3 11 11 9 74.074 74.069 2;3 6.4016E-14 24804 20211116_3447_TMUAki_TMT10x_S_F8 223.08 0 202530000 325580000 762490 341160000 204410000 285240000 230390000 194970000 218600000 226120000 237380000 188560000 303860000 15713000 346110000 196580000 292000000 231970000 203720000 223570000 219550000 228410000 19 19 9 19 19 19 19 19 19 19 19 108170000 169640000 472470 179110000 111870000 182910000 123660000 99118000 116920000 119370000 124450000 100710000 158330000 8484800 182110000 107520000 184210000 124610000 105610000 119510000 115740000 119820000 7 7 3 7 7 7 7 7 7 7 7 94360000 155940000 290020 162060000 92542000 102330000 106720000 95851000 101680000 106750000 112930000 87854000 145530000 7228500 164000000 89053000 107790000 107360000 98108000 104060000 103810000 108590000 12 12 6 12 12 12 12 12 12 12 12 16685000000 9015200000 7670300000 12883 760 11968 68039;68040;68041;68042;68043;68044;68045;68046;68047;68048;68049;68050;68051;68052;68053;68054;68055;68056;68057;68058 82242;82243;82244;82245;82246;82247;82248;82249;82250;82251;82252;82253;82254;82255;82256;82257;82258;82259;82260;82261;82262;82263;82264 82261 23 LTLSALLDGKNVNAGGHK Unmodified 1806.9952 0.99519598 760 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 0 0 0 1 By matching By MS/MS 3 0 2 1 1 60.717 60.371 4 9.346E-09 21396 20211116_3441_TMUAki_TMT10x_S_F3 119.23 107.26 3105400 5221000 266600 5086200 3531800 3755100 3111600 6220800 5195700 5045200 5241300 2893400 4871200 511900 5178400 3392100 3963000 3242800 6165300 5196100 4975800 5054700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3105400 5221000 266600 5086200 3531800 3755100 3111600 6220800 5195700 5045200 5241300 2893400 4871200 511900 5178400 3392100 3963000 3242800 6165300 5196100 4975800 5054700 1 1 1 1 1 1 1 1 1 1 1 1216000000 591300000 624680000 12884 760 11969 68059;68060 82265 82265 1 LTLSALVDGK Unmodified 1015.5914 0.59136099 1034 P45880;P45880-2;P45880-1 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 7.11 1.05 2 3 4 9 11 7 61.367 61.462 2;3 1.9183E-09 24128 20211116_3446_TMUAki_TMT10x_S_F7 182.65 120.68 100560000 162630000 594320 176890000 109660000 149630000 100610000 137200000 114730000 129100000 119320000 93634000 151800000 8657400 179040000 104950000 153830000 102950000 139880000 116260000 126420000 114960000 17 17 13 17 16 17 16 17 17 17 17 48517000 78887000 449460 87931000 52233000 101360000 49275000 67494000 49762000 66034000 52554000 45175000 73644000 4222100 89266000 50036000 101670000 50139000 70289000 50702000 64553000 50610000 12 12 10 12 11 12 11 12 12 12 12 52045000 83739000 144860 88962000 57425000 48262000 51335000 69703000 64963000 63068000 66761000 48459000 78157000 4435300 89779000 54912000 52158000 52812000 69588000 65556000 61869000 64347000 5 5 3 5 5 5 5 5 5 5 5 22358000000 11250000000 11108000000 12885 1034 11970 68061;68062;68063;68064;68065;68066;68067;68068;68069;68070;68071;68072;68073;68074;68075;68076;68077;68078 82266;82267;82268;82269;82270;82271;82272;82273;82274;82275;82276;82277;82278;82279;82280;82281;82282;82283;82284;82285 82282 20 LTLTFNR Unmodified 863.4865 0.48650199 949;950 P36542;P36542-2 ATP5C1 ATP synthase subunit gamma, mitochondrial no no 0 0 0 0 By MS/MS 2 0 1 1 52.396 52.142 2 0.061761 16470 20211116_3429_TMUAki_TMT10x_P_F2 63.054 34.482 8337400 12487000 0 13202000 15237000 17836000 8763100 10545000 10642000 9234300 10972000 7761500 11654000 608400 13487000 14435000 17720000 9285400 11050000 10756000 9072700 10574000 1 1 0 1 1 1 1 1 1 1 1 8337400 12487000 0 13202000 15237000 17836000 8763100 10545000 10642000 9234300 10972000 7761500 11654000 608400 13487000 14435000 17720000 9285400 11050000 10756000 9072700 10574000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 218170000 218170000 0 12886 949;950 11971 68079 82286 82286 1 LTLYDIAHTPGVAADLSHIETK Unmodified 2364.2325 0.23252572 989 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.15 2.13 2 1 1 3 3 4 3 3 10 10 72.695 72.682 3;4 9.5663E-56 23120 20211116_3445_TMUAki_TMT10x_S_F6 227.06 208.76 285790000 465670000 3043900 459890000 317420000 417750000 342460000 284210000 273380000 288770000 329940000 266100000 434490000 23380000 468940000 305000000 425170000 343930000 295840000 283150000 281840000 316530000 44 44 25 44 44 44 44 44 44 44 44 155710000 251930000 2068300 249330000 155590000 278010000 183400000 160340000 154010000 162200000 173440000 144980000 235070000 13065000 254970000 149890000 278800000 183670000 169010000 158650000 158330000 166710000 20 20 11 20 20 20 20 20 20 20 20 130080000 213740000 975640 210560000 161830000 139740000 159060000 123880000 119380000 126570000 156500000 121120000 199430000 10315000 213970000 155100000 146370000 160260000 126830000 124500000 123500000 149820000 24 24 14 24 24 24 24 24 24 24 24 97842000000 47945000000 49897000000 12887 989 11972 68080;68081;68082;68083;68084;68085;68086;68087;68088;68089;68090;68091;68092;68093;68094;68095;68096;68097;68098;68099 82287;82288;82289;82290;82291;82292;82293;82294;82295;82296;82297;82298;82299;82300;82301;82302;82303;82304;82305;82306;82307;82308;82309;82310;82311;82312;82313;82314;82315;82316;82317;82318;82319;82320;82321;82322;82323;82324;82325;82326;82327;82328;82329;82330 82318 44 LTMQVSSLQR Oxidation (M) 1177.6125 0.61250714 942 P35659 DEK Protein DEK yes yes 0 0 1 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 36.515 36.821 2 0.00012109 8685 20211116_3436_TMUAki_TMT10x_P_F8 126.31 82.196 469970 767840 5650.3 886570 1074700 970950 614480 785730 672270 539510 717700 437620 716920 51626 897330 1019200 979770 649150 800860 683010 537050 690930 4 4 3 4 4 4 4 4 4 4 4 373720 579370 5650.3 700960 967290 885410 520300 590010 521420 438180 545120 348010 541070 44563 709260 916590 883980 551170 610240 531240 434210 525120 3 3 3 3 3 3 3 3 3 3 3 96254 188470 0 185610 107400 85532 94177 195730 150860 101320 172580 89613 175850 7063.1 188060 102570 95784 97973 190610 151760 102850 165810 1 1 0 1 1 1 1 1 1 1 1 110980000 86686000 24291000 12888 942 11973 68100;68101;68102;68103 82331;82332;82333 82332 1203 3 LTNVAVVR Unmodified 870.5287 0.52870115 3267 Q9Y3A5 SBDS Ribosome maturation protein SBDS yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 39.723 40.026 2 0.0083944 9457 20211116_3447_TMUAki_TMT10x_S_F8 86.67 55.381 3606800 5767800 2396.2 6325500 7367800 6728100 4683700 4691400 4693600 3854800 4960700 3358100 5384100 334110 6419700 6995900 6783500 4891500 4847700 4783900 3799300 4777100 3 3 1 3 3 3 3 3 3 3 3 2795900 4378100 0 4858700 6423400 6025900 3817300 3575000 3557500 2859700 3752300 2603100 4087000 262780 4940200 6092200 6011700 4000200 3737100 3637400 2822400 3613600 2 2 0 2 2 2 2 2 2 2 2 810880 1389800 2396.2 1466800 944430 702180 866420 1116400 1136000 995120 1208400 755020 1297100 71331 1479500 903740 771800 891280 1110500 1146500 976880 1163500 1 1 1 1 1 1 1 1 1 1 1 222850000 156550000 66301000 12889 3267 11974 68104;68105;68106 82334;82335 82335 2 LTPEDFAR Unmodified 947.47125 0.47124585 2882 Q9NP79;Q9NP79-2 VTA1 Vacuolar protein sorting-associated protein VTA1 homolog yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 48.079 48.17 2 0.00044689 13710 20211116_3431_TMUAki_TMT10x_P_F4 151.56 105.68 10099000 16242000 119390 19368000 18513000 19680000 11801000 16970000 16406000 14011000 15495000 9403300 15167000 1023200 19543000 17586000 19968000 12464000 17302000 16456000 13806000 14976000 3 3 2 3 3 3 3 3 3 3 3 6515300 9955300 10944 11392000 15152000 16252000 8613600 10379000 10064000 8855800 8969500 6066100 9294700 628150 11593000 14362000 16125000 9124000 10804000 10136000 8711800 8686400 2 2 1 2 2 2 2 2 2 2 2 3583300 6286300 108450 7976700 3360200 3427400 3187600 6590400 6342000 5155200 6525600 3337200 5872100 395020 7950100 3224100 3843300 3340000 6498100 6320400 5094000 6289300 1 1 1 1 1 1 1 1 1 1 1 758630000 539180000 219450000 12890 2882 11975 68107;68108;68109;68110 82336;82337;82338;82339 82337 4 LTPEEEEILNK Unmodified 1313.6715 0.6714618 1338 P62241 RPS8 40S ribosomal protein S8 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 4 4 4 4 8 8 62.015 61.804 2;3 1.119E-11 21911 20211116_3441_TMUAki_TMT10x_S_F3 173.24 145.91 391180000 735270000 1265300 486880000 672960000 927440000 552780000 921040000 877200000 838950000 718350000 364210000 685150000 33714000 520830000 642070000 917490000 577030000 934320000 872570000 822740000 697880000 18 18 7 18 18 18 18 18 18 18 18 183650000 324580000 598460 216620000 361750000 622880000 350430000 399580000 401670000 360690000 302460000 170980000 302470000 15406000 234690000 346430000 604470000 357640000 416370000 402870000 353870000 294850000 8 8 4 8 8 8 8 8 8 8 8 207530000 410680000 666880 270260000 311210000 304560000 202340000 521470000 475530000 478260000 415890000 193230000 382690000 18307000 286140000 295640000 313020000 219400000 517950000 469700000 468880000 403040000 10 10 3 10 10 10 10 10 10 10 10 19599000000 11961000000 7637800000 12891 1338 11976 68111;68112;68113;68114;68115;68116;68117;68118;68119;68120;68121;68122;68123;68124;68125;68126 82340;82341;82342;82343;82344;82345;82346;82347;82348;82349;82350;82351;82352;82353;82354;82355;82356;82357;82358 82355 19 LTPEEEEILNKK Unmodified 1441.7664 0.76642482 1338 P62241 RPS8 40S ribosomal protein S8 yes yes 0 0 0 1 By matching By MS/MS 3.67 0.471 1 2 2 1 57.299 57.246 3 7.8396E-06 17846 20211116_3442_TMUAki_TMT10x_S_F4 105.65 87.514 5189800 8315800 14337 12321000 4066100 3789400 3472400 5867200 6220700 5379500 7630400 4832300 7774500 427890 12159000 3884700 4433300 3638300 5845900 6258200 5274000 7317100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5189800 8315800 14337 12321000 4066100 3789400 3472400 5867200 6220700 5379500 7630400 4832300 7774500 427890 12159000 3884700 4433300 3638300 5845900 6258200 5274000 7317100 2 2 2 2 2 2 2 2 2 2 2 1062800000 671580000 391270000 12892 1338 11977 68127;68128;68129 82359;82360 82359 2 LTPEELER Unmodified 985.50803 0.50802529 429 O95399;O95399-2 UTS2 Urotensin-2 yes no 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 2 3 39.578 39.465 2 0.00041512 9926 20211116_3440_TMUAki_TMT10x_S_F2 142.79 0 7346900 11638000 30521 13119000 13948000 12171000 8826700 12048000 14744000 9995000 11998000 6840100 10865000 622430 13265000 13240000 12455000 9404200 12194000 14643000 9846200 11659000 6 6 3 6 6 6 6 6 6 6 6 3327900 4979700 5785.4 5574600 9475600 8970800 4740200 5622800 7324400 4536000 5235900 3097900 4648800 264490 5695800 8960300 8854200 5135800 5853300 7264100 4474900 5115500 3 3 1 3 3 3 3 3 3 3 3 4019000 6658300 24735 7544300 4472400 3200400 4086500 6425300 7419500 5459000 6762300 3742200 6216200 357950 7568900 4279800 3600700 4268400 6341100 7378900 5371300 6543700 3 3 2 3 3 3 3 3 3 3 3 672820000 416000000 256820000 12893 429 11978 68130;68131;68132;68133;68134 82361;82362;82363;82364;82365;82366 82365 6 LTPEQLHSMR Oxidation (M) 1226.6078 0.60775611 3244 Q9Y2R0 COA3 Cytochrome c oxidase assembly factor 3 homolog, mitochondrial yes yes 0 0 1 0 By MS/MS 5 0 1 1 31.079 31.015 3 0.083506 7096 20211116_3433_TMUAki_TMT10x_P_F5 41.236 26.542 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12894 3244 11979 68135 82367 82367 3225 1 LTPITYPQGLAMAK Oxidation (M) 1518.8116 0.81160087 1390 P63000;P63000-2 RAC1 Ras-related C3 botulinum toxin substrate 1 yes no 0 0 1 0 By MS/MS By MS/MS 2 0 2 1 1 62.9 62.636 3 0.00051392 20760 20211116_3429_TMUAki_TMT10x_P_F2 77.527 62.261 12352000 21184000 192480 20622000 17922000 25011000 16070000 18832000 17755000 17185000 18018000 11502000 19764000 1281500 21143000 17150000 25070000 16449000 19410000 17998000 16851000 17374000 3 3 3 3 3 3 3 3 3 3 3 7671100 13316000 122110 12743000 13258000 20157000 11301000 12481000 11836000 11070000 11468000 7143400 12423000 828030 13152000 12670000 19905000 11582000 13035000 12005000 10870000 11074000 2 2 2 2 2 2 2 2 2 2 2 4680900 7867500 70369 7878200 4664500 4854100 4769300 6350900 5918300 6114500 6550900 4358900 7341300 453430 7991100 4479500 5165200 4867800 6374600 5993000 5981500 6299800 1 1 1 1 1 1 1 1 1 1 1 1429300000 744550000 684710000 12895 1390 11980 68136;68137 82368;82369;82370 82368 1867 3 LTPLGYHLASLPVDVR Unmodified 1749.9778 0.977755 1989 Q6P158 DHX57 Putative ATP-dependent RNA helicase DHX57 yes yes 0 0 0 0 By MS/MS 2 0 1 1 66.793 66.482 3 0.0041418 22340 20211116_3429_TMUAki_TMT10x_P_F2 61.962 41.299 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12896 1989 11981 68138 82371 82371 1 LTPLILKPFGNSISR Unmodified 1654.977 0.97702672 1732 Q14739 LBR Lamin-B receptor yes yes 0 0 0 1 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 71.087 71.151 3 3.3519E-19 22200 20211116_3447_TMUAki_TMT10x_S_F8 162.61 140.52 117570000 193350000 639440 173130000 139350000 164810000 133440000 130410000 127450000 132570000 143790000 109470000 180340000 9980900 177930000 133460000 167640000 135480000 134390000 130500000 129390000 138200000 10 10 7 10 10 10 10 10 10 10 10 52398000 82479000 278110 75129000 53085000 97350000 59273000 58080000 57284000 58648000 63741000 48788000 76934000 4374000 77496000 51057000 96921000 59738000 61050000 58593000 57255000 61289000 4 4 3 4 4 4 4 4 4 4 4 65174000 110870000 361320 98002000 86266000 67465000 74167000 72331000 70170000 73922000 80046000 60683000 103410000 5606800 100430000 82406000 70721000 75740000 73343000 71912000 72130000 76912000 6 6 4 6 6 6 6 6 6 6 6 20343000000 10514000000 9829100000 12897 1732 11982 68139;68140;68141;68142;68143;68144 82372;82373;82374;82375;82376;82377;82378;82379;82380;82381 82380 10 LTPLSHEVISR Unmodified 1250.6983 0.69828568 993 P41091;Q2VIR3;Q2VIR3-2 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.816 1 5 2 1 4 5 38.506 38.645 2;3 3.5566E-19 9095 20211116_3434_TMUAki_TMT10x_P_F6 227.81 172.28 6347400 9568900 101080 10168000 10016000 10138000 7122800 7021000 7046400 6604000 8182300 5910700 8931100 660590 10330000 9536300 10260000 7373800 7283400 7212100 6467000 7858000 12 12 8 12 12 12 12 12 12 12 12 3898700 5689200 43131 5967100 7571200 8054900 4704800 4529600 4509100 4247300 5081000 3630400 5309700 408930 6099000 7189800 7997800 4916100 4774900 4616100 4159800 4883700 4 4 2 4 4 4 4 4 4 4 4 2448700 3879700 57949 4200900 2444600 2083400 2418000 2491400 2537300 2356700 3101300 2280300 3621400 251660 4231300 2346500 2262200 2457800 2508500 2596000 2307200 2974300 8 8 6 8 8 8 8 8 8 8 8 1428800000 1248900000 179880000 12898 993 11983 68145;68146;68147;68148;68149;68150;68151;68152;68153 82382;82383;82384;82385;82386;82387;82388;82389;82390;82391;82392;82393;82394;82395 82383 14 LTPVLLAK Unmodified 853.56369 0.56368968 1647 Q13561;Q13561-3;Q13561-2 DCTN2 Dynactin subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS 2.4 0.49 3 2 3 2 62.311 62.009 2 0.0018759 22057 20211116_3441_TMUAki_TMT10x_S_F3 112.17 72.068 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12899 1647 11984 68154;68155;68156;68157;68158 82396;82397;82398;82399;82400 82400 5 LTPVPDSFFAK Unmodified 1220.6441 0.64412484 395 O94906;O94906-2 PRPF6 Pre-mRNA-processing factor 6 yes no 0 0 0 0 By MS/MS By MS/MS 6.71 2.37 1 2 4 3 4 71.903 71.921 2;3 4.8229E-16 22551 20211116_3447_TMUAki_TMT10x_S_F8 212.03 154.44 37649000 61745000 33933 60567000 44357000 57379000 42638000 41843000 41297000 41678000 48253000 35054000 57610000 3087100 61824000 42480000 58302000 43298000 43322000 42318000 40712000 46332000 7 7 2 7 7 7 7 7 7 7 7 19822000 32445000 33900 31588000 23270000 40006000 24415000 22443000 21231000 22492000 24742000 18456000 30272000 1664700 32411000 22339000 39841000 24607000 23706000 21863000 21965000 23759000 4 4 1 4 4 4 4 4 4 4 4 17827000 29299000 32.552 28980000 21088000 17374000 18223000 19400000 20066000 19186000 23510000 16598000 27338000 1422300 29413000 20141000 18461000 18691000 19616000 20455000 18747000 22573000 3 3 1 3 3 3 3 3 3 3 3 4186400000 2816100000 1370400000 12900 395 11985 68159;68160;68161;68162;68163;68164;68165 82401;82402;82403;82404;82405;82406;82407;82408;82409 82408 9 LTPVRPAAASPIVSGAR Unmodified 1661.9577 0.95768826 3240 Q9Y2K7;Q9Y2K7-5;Q9Y2K7-4;Q9Y2K7-2;Q9Y2K7-3 KDM2A Lysine-specific demethylase 2A yes no 0 0 0 1 By MS/MS By MS/MS 3 0.894 2 1 2 2 3 39.981 39.985 3 3.0906E-29 13180 20211116_3441_TMUAki_TMT10x_S_F3 185.46 160.02 4419600 6599500 88735 7275500 6663400 6581800 4738400 4411300 5082600 4069600 5446100 4115300 6160600 434330 7364100 6343200 6699100 4917700 4584400 5168500 3988700 5242400 4 4 3 4 4 4 4 4 4 4 4 2527500 3627800 77599 4250800 5038800 5118000 2778500 2642600 3201000 2475200 3089100 2353900 3387400 317040 4305500 4779300 5104800 2949600 2806700 3234100 2424300 2983400 1 1 1 1 1 1 1 1 1 1 1 1892100 2971700 11136 3024700 1624700 1463800 1959900 1768700 1881600 1594400 2357100 1761400 2773200 117290 3058700 1563900 1594400 1968100 1777700 1934500 1564300 2259100 3 3 2 3 3 3 3 3 3 3 3 530380000 360620000 169760000 12901 3240 11986 68166;68167;68168;68169;68170 82410;82411;82412;82413;82414 82412 5 LTPYEVDELRR Unmodified 1389.7252 0.72522871 2368 Q92841;Q92841-3;Q92841-1;Q92841-2 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 0 1 By MS/MS By MS/MS 3.67 1.43 1 2 2 3 3 1 8 4 45.237 45.246 2;3 9.2239E-19 13982 20211116_3430_TMUAki_TMT10x_P_F3 220.5 176.19 27387000 44305000 469420 53699000 50720000 53007000 33222000 45585000 43833000 39434000 41868000 25503000 41376000 2976000 54108000 48217000 53876000 34942000 46539000 44059000 38766000 40449000 13 13 9 13 13 13 13 13 13 13 13 16450000 26346000 171640 31666000 40686000 43642000 24513000 27573000 26591000 24087000 25014000 15318000 24604000 1838700 32108000 38614000 43360000 25774000 28741000 26905000 23669000 24179000 8 8 5 8 8 8 8 8 8 8 8 10937000 17959000 297770 22033000 10034000 9365100 8709600 18012000 17242000 15346000 16854000 10185000 16772000 1137200 22000000 9603500 10516000 9167900 17797000 17154000 15098000 16271000 5 5 4 5 5 5 5 5 5 5 5 13959000000 7819200000 6140100000 12902 2368 11987 68171;68172;68173;68174;68175;68176;68177;68178;68179;68180;68181;68182 82415;82416;82417;82418;82419;82420;82421;82422;82423;82424;82425;82426;82427;82428;82429 82417 15 LTQAQIFDYGEIPNFPR Unmodified 2008.0054 0.005426314 469 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 3 2 1 78.007 78.075 2;3 9.9348E-08 27453 20211116_3446_TMUAki_TMT10x_S_F7 116.63 102.19 3582500 5860900 58279 5941000 4337000 3737200 5040700 2175000 2085000 2852700 4257100 3336100 5469100 361900 6022200 4179800 3908000 4984700 2310500 2327500 2758200 4039400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3582500 5860900 58279 5941000 4337000 3737200 5040700 2175000 2085000 2852700 4257100 3336100 5469100 361900 6022200 4179800 3908000 4984700 2310500 2327500 2758200 4039400 1 1 1 1 1 1 1 1 1 1 1 1047500000 306630000 740870000 12903 469 11988 68183;68184;68185 82430;82431 82431 2 LTQLGTFEDHFLSLQR Unmodified 1903.9792 0.97921156 472 P00533;P00533-2;P00533-4;P00533-3 EGFR Epidermal growth factor receptor yes no 0 0 0 0 By MS/MS 8 0 1 1 75.395 75.289 3 6.0515E-11 23918 20211116_3447_TMUAki_TMT10x_S_F8 133.78 115.42 2566100 4461000 129420 4133800 3337200 3221200 2963600 3034800 3016100 3243000 3367100 2390300 4161300 344160 4226600 3198300 3333600 3027200 3101300 3078500 3158700 3237200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2566100 4461000 129420 4133800 3337200 3221200 2963600 3034800 3016100 3243000 3367100 2390300 4161300 344160 4226600 3198300 3333600 3027200 3101300 3078500 3158700 3237200 1 1 1 1 1 1 1 1 1 1 1 270700000 0 270700000 12904 472 11989 68186 82432 82432 1 LTQVLNTHYVAPR Unmodified 1510.8256 0.82561145 1154 P51532-5;P51532-2;P51532-3;P51532-4;P51532;P51531;P51531-2 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 47.915 47.731 3 8.4989E-26 16178 20211116_3441_TMUAki_TMT10x_S_F3 229.97 201.69 11939000 19945000 168600 21464000 18446000 19234000 14554000 16605000 16798000 14720000 17927000 11117000 18616000 1198700 21757000 17597000 19672000 15035000 16959000 17031000 14454000 17259000 7 7 4 7 7 7 7 7 7 7 7 5850500 9329300 90454 10540000 12507000 13958000 8695000 8293100 7562800 6810300 8889700 5447900 8709800 638800 10718000 11901000 13882000 8983900 8673300 7790500 6712400 8534500 4 4 2 4 4 4 4 4 4 4 4 6088100 10616000 78142 10924000 5939200 5275300 5858600 8311700 9235600 7909700 9037600 5669100 9906600 559850 11038000 5696500 5790800 6051300 8285500 9240800 7741600 8724400 3 3 2 3 3 3 3 3 3 3 3 1752900000 897400000 855470000 12905 1154 11990 68187;68188;68189;68190 82433;82434;82435;82436;82437;82438;82439 82439 7 LTQYIDGQGRPR Unmodified 1402.7317 0.73171107 1646 Q13555;Q13555-8;Q13555-5;Q13555-9;Q13555-11;Q13555-6;Q13555-10;Q13555-7;Q13555-4;Q13555-2;Q13555-3;Q13554;Q13554-2;Q13554-5;Q13554-8;Q13554-6;Q13554-4;Q13554-3;Q13554-7 CAMK2G;CAMK2B Calcium/calmodulin-dependent protein kinase type II subunit gamma;Calcium/calmodulin-dependent protein kinase type II subunit beta yes no 0 0 0 1 By MS/MS 8 0 1 1 38.805 39.06 3 9.5112E-05 9644 20211116_3436_TMUAki_TMT10x_P_F8 96.464 59.879 405120 692830 13421 652650 916820 941980 590040 566180 601780 517740 673500 377300 646340 53261 672970 871690 933330 615960 593170 614240 507650 647480 1 1 1 1 1 1 1 1 1 1 1 405120 692830 13421 652650 916820 941980 590040 566180 601780 517740 673500 377300 646340 53261 672970 871690 933330 615960 593170 614240 507650 647480 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42708000 42708000 0 12906 1646 11991 68191 82440 82440 1 LTRDDVIQICGPADGIR Unmodified 1897.968 0.96799495 1567 Q12800;Q12800-2;Q12800-3;Q12800-4 TFCP2 Alpha-globin transcription factor CP2 yes no 0 0 0 1 By MS/MS By matching 4.67 0.471 1 2 2 1 53.814 53.986 3 0.00019895 16289 20211116_3433_TMUAki_TMT10x_P_F5 72.793 56.482 4985500 7213900 80696 9208500 10780000 10019000 6186900 5396600 4845200 5226300 6923400 4642600 6738800 569700 9265400 10226000 10053000 6474200 5715100 5061600 5111300 6614500 1 1 1 1 1 1 1 1 1 1 1 4985500 7213900 80696 9208500 10780000 10019000 6186900 5396600 4845200 5226300 6923400 4642600 6738800 569700 9265400 10226000 10053000 6474200 5715100 5061600 5111300 6614500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1092300000 318930000 773400000 12907 1567 11992 68192;68193;68194 82441;82442 82442 2 LTRDETNYGIPQR Unmodified 1561.7849 0.78486885 1405 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 4.75 0.433 1 3 3 1 36.736 36.79 3 3.661E-22 9359 20211116_3433_TMUAki_TMT10x_P_F5 172.85 142.52 3504300 5326300 15778 7896100 11660000 7230700 4344000 4506900 5532000 3073600 5886600 3262900 4979600 419460 7863900 10997000 7346000 4825600 4676800 5588400 3060900 5667600 3 3 3 3 3 3 3 3 3 3 3 2661700 4078400 15329 5804500 10953000 6722100 3673300 3297400 4076600 2268500 4269900 2478500 3812000 351090 5813300 10320000 6714400 4119100 3494600 4136500 2258000 4113100 2 2 2 2 2 2 2 2 2 2 2 842530 1247900 448.46 2091700 707100 508640 670700 1209500 1455300 805060 1616700 784480 1167600 68373 2050600 677110 631570 706510 1182300 1452000 802930 1554500 1 1 1 1 1 1 1 1 1 1 1 1588800000 1274000000 314840000 12908 1405 11993 68195;68196;68197;68198 82443;82444;82445;82446 82445 4 LTREEGTPLTLYYSHWR Unmodified 2121.0643 0.064338176 3287 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog yes yes 0 0 0 1 By MS/MS 1 0 1 1 55.473 55.173 4 0.00019593 18194 20211116_3439_TMUAki_TMT10x_S_F1 78.441 60.741 2772900 4692600 12910 5171200 2911500 2612200 2733300 3824700 3825300 3535400 3936200 2581900 4380500 243860 5203400 2788000 2846200 2815600 3818900 3847700 3464800 3793700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2772900 4692600 12910 5171200 2911500 2612200 2733300 3824700 3825300 3535400 3936200 2581900 4380500 243860 5203400 2788000 2846200 2815600 3818900 3847700 3464800 3793700 2 2 2 2 2 2 2 2 2 2 2 112680000 0 112680000 12909 3287 11994 68199 82447;82448 82447 2 LTRPGSSYFNLNPFEVLQIDPEVTDEEIK Unmodified 3349.6718 0.67180274 370 O75937 DNAJC8 DnaJ homolog subfamily C member 8 yes yes 0 0 0 1 By MS/MS By matching 6.33 0.471 2 1 1 2 80.055 80.064 4 8.4244E-13 25769 20211116_3434_TMUAki_TMT10x_P_F6 103.86 93.053 1298500 2223000 14508 2170800 1172300 2034800 1422100 1043600 976070 1301800 1523200 1209200 2074100 119410 2216200 1131200 2059100 1415600 1118800 1031900 1260800 1452400 1 1 1 1 1 1 1 1 1 1 1 1298500 2223000 14508 2170800 1172300 2034800 1422100 1043600 976070 1301800 1523200 1209200 2074100 119410 2216200 1131200 2059100 1415600 1118800 1031900 1260800 1452400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1409100000 491200000 917860000 12910 370 11995 68200;68201;68202 82449 82449 1 LTSADALRPSVVSITGPLIR Unmodified 2065.1895 0.18953869 2350 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 69.178 68.997 3 7.3761E-59 22113 20211116_3431_TMUAki_TMT10x_P_F4 248.52 211.08 10287000 17180000 8103.3 16141000 10605000 14441000 11821000 10515000 10856000 11389000 12878000 9577700 16027000 848330 16515000 10198000 14728000 11897000 10916000 11158000 11087000 12361000 3 3 1 3 3 3 3 3 3 3 3 4433400 6934800 8103.3 6605400 4435700 7877300 5105700 3867000 4469700 4686200 5355300 4128000 6469700 375140 6780800 4270500 7856300 5124300 4158700 4606500 4543000 5138600 1 1 1 1 1 1 1 1 1 1 1 5853200 10245000 0 9535900 6169100 6563700 6714800 6648300 6386500 6702400 7523100 5449700 9557400 473190 9733900 5927800 6871900 6772400 6756900 6551800 6543700 7222000 2 2 0 2 2 2 2 2 2 2 2 3176500000 1339000000 1837500000 12911 2350 11996 68203;68204;68205 82450;82451;82452 82450 3 LTSCPAKDPLDRR Carbamidomethyl (C) 1584.8042 0.80422409 2231 Q8NC38 ZNF436-AS1 Putative uncharacterized protein ZNF436-AS1 yes yes 0 1 0 2 By MS/MS 8 0 1 1 74.83 74.851 2 0.10923 24288 20211116_3436_TMUAki_TMT10x_P_F8 43.512 19.661 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12912 2231 11997 68206 82453 82453 22 1 LTSFIGAIAIGDLVK Unmodified 1516.8865 0.88648038 1429 P78371 CCT2 T-complex protein 1 subunit beta yes yes 0 0 0 0 By MS/MS 4 0 1 1 81.67 81.661 2 1.08E-57 27750 20211116_3442_TMUAki_TMT10x_S_F4 264.72 217.53 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12913 1429 11998 68207 82454 82454 1 LTSFITVFK Unmodified 1054.6063 0.60628277 1656 Q13617;Q13617-2 CUL2 Cullin-2 yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 78.767 78.781 2 0.0022059 26472 20211116_3433_TMUAki_TMT10x_P_F5 88.177 49.371 12812000 21139000 405830 20351000 14774000 19372000 16154000 12687000 13511000 14342000 15803000 11933000 19722000 1467900 20803000 14225000 19645000 16232000 13286000 13942000 13939000 15173000 2 2 2 2 2 2 2 2 2 2 2 6337500 9402600 157990 9412700 6620300 11891000 7227200 6074600 6627000 6931100 7262700 5902000 8773700 676620 9638800 6372700 11830000 7280600 6495400 6790600 6734000 6986400 1 1 1 1 1 1 1 1 1 1 1 6474900 11736000 247840 10939000 8153300 7480800 8926700 6612000 6883800 7411000 8540000 6030600 10948000 791300 11164000 7852200 7814700 8951100 6790400 7151300 7205100 8187000 1 1 1 1 1 1 1 1 1 1 1 706500000 338960000 367540000 12914 1656 11999 68208;68209 82455;82456 82455 2 LTSLAAALDENKDGKVNIDDLVK Unmodified 2441.3013 0.30133356 412 O95202 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes yes 0 0 0 2 By MS/MS 6 0 1 1 76.648 76.603 4 0.01378 24723 20211116_3445_TMUAki_TMT10x_S_F6 43.841 35.944 5181200 10682000 159720 6992200 9839800 8820700 7405400 8963000 8239200 7965000 8126400 4825400 9953300 643660 7421100 9383400 8876400 7664700 9075900 8341500 7820100 7842800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5181200 10682000 159720 6992200 9839800 8820700 7405400 8963000 8239200 7965000 8126400 4825400 9953300 643660 7421100 9383400 8876400 7664700 9075900 8341500 7820100 7842800 1 1 1 1 1 1 1 1 1 1 1 422170000 0 422170000 12915 412 12000 68210 82457 82457 1 LTSLNVK Unmodified 773.4647 0.46470391 818 P26599;P26599-2;P26599-3;O95758;O95758-2;O95758-4;O95758-7;O95758-1;O95758-6;O95758-5 PTBP1;PTBP3 Polypyrimidine tract-binding protein 1;Polypyrimidine tract-binding protein 3 yes no 0 0 0 0 By MS/MS 8 0 1 1 47.321 47.432 2 0.0071182 13086 20211116_3436_TMUAki_TMT10x_P_F8 117.02 50.762 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12916 818 12001 68211 82458 82458 1 LTSLVPFVDAFQLER Unmodified 1733.9352 0.93522148 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 By MS/MS By MS/MS 4.74 2.84 4 4 3 4 4 10 9 81.472 81.471 2;3 2.1192E-33 28811 20211116_3439_TMUAki_TMT10x_S_F1 228.87 188.28 50406000 79913000 330680 79868000 55025000 68148000 61409000 36749000 35609000 40330000 58081000 46933000 74567000 4248300 81307000 52922000 69442000 61158000 39055000 38152000 39241000 55333000 21 21 10 21 21 21 21 21 21 21 21 23250000 35796000 143450 36912000 23000000 39506000 26680000 17170000 16335000 19403000 26270000 21648000 33405000 1840100 37616000 22140000 39584000 26550000 18651000 17423000 18858000 25034000 10 10 5 10 10 10 10 10 10 10 10 27155000 44118000 187230 42956000 32025000 28641000 34729000 19579000 19274000 20927000 31811000 25285000 41162000 2408200 43691000 30781000 29857000 34607000 20404000 20729000 20383000 30299000 11 11 5 11 11 11 11 11 11 11 11 17690000000 11917000000 5773400000 12917 1684 12002 68212;68213;68214;68215;68216;68217;68218;68219;68220;68221;68222;68223;68224;68225;68226;68227;68228;68229;68230 82459;82460;82461;82462;82463;82464;82465;82466;82467;82468;82469;82470;82471;82472;82473;82474;82475;82476;82477;82478;82479 82469 21 LTSLYAEHPGDCLIFK Unmodified 1862.9237 0.92367052 3347 Q9Y6D9;Q9Y6D9-3 MAD1L1 Mitotic spindle assembly checkpoint protein MAD1 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 3 2 1 67.952 68.388 3 5.9336E-10 22875 20211116_3435_TMUAki_TMT10x_P_F7 113.4 76.625 3962200 6894100 170180 7182000 4493800 4235700 4368500 4220600 3652900 4214400 5282400 3690400 6434000 494540 7262400 4316000 4496500 4415500 4291800 3805300 4116200 5045300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3962200 6894100 170180 7182000 4493800 4235700 4368500 4220600 3652900 4214400 5282400 3690400 6434000 494540 7262400 4316000 4496500 4415500 4291800 3805300 4116200 5045300 1 1 1 1 1 1 1 1 1 1 1 1132700000 782450000 350220000 12918 3347 12003 68231;68232;68233 82480;82481 82480 2 LTSPGALLFQ Unmodified 1045.5808 0.5807963 276 O60566;O60566-3;O60566-2 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta yes no 0 0 0 0 By MS/MS 8 0 1 1 79.525 79.53 2 0.00292 26205 20211116_3436_TMUAki_TMT10x_P_F8 77.923 51.846 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12919 276 12004 68234 82482 82482 1 LTTDFNVIVEALSK Unmodified 1548.8399 0.83992412 509 P05455 SSB Lupus La protein yes yes 0 0 0 0 By MS/MS By MS/MS 5.76 2.13 2 1 4 2 4 4 9 8 81.641 81.649 2;3 1.6948E-37 28923 20211116_3446_TMUAki_TMT10x_S_F7 252.44 209.7 33616000 56234000 896280 52230000 42708000 50547000 46171000 35354000 35040000 38000000 45036000 31306000 52458000 3683800 53541000 41088000 51256000 46307000 36791000 36489000 37004000 43135000 17 17 14 17 17 17 17 17 17 17 17 13924000 23205000 617180 20587000 14575000 26720000 17139000 15394000 15414000 16081000 19327000 12968000 21643000 1683700 21279000 14074000 26587000 17197000 16244000 15895000 15677000 18523000 8 8 7 8 8 8 8 8 8 8 8 19692000 33030000 279100 31643000 28133000 23827000 29032000 19960000 19627000 21919000 25709000 18337000 30815000 2000100 32262000 27014000 24669000 29110000 20547000 20594000 21326000 24612000 9 9 7 9 9 9 9 9 9 9 9 5825400000 3329100000 2496400000 12920 509 12005 68235;68236;68237;68238;68239;68240;68241;68242;68243;68244;68245;68246;68247;68248;68249;68250;68251 82483;82484;82485;82486;82487;82488;82489;82490;82491;82492;82493;82494;82495;82496;82497;82498;82499;82500;82501 82498 19 LTTDPDLILEVLR Unmodified 1496.845 0.84500949 2043 Q71RC2;Q71RC2-5;Q71RC2-6;Q71RC2-4;Q71RC2-3;Q71RC2-7 LARP4 La-related protein 4 yes no 0 0 0 0 By MS/MS 5 0 1 1 80.551 80.561 2 3.5551E-12 26038 20211116_3444_TMUAki_TMT10x_S_F5 130.1 98.726 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12921 2043 12006 68252 82502 82502 1 LTTLADLFRPPIDLMHK Oxidation (M) 1996.0816 0.081568145 391 O94888 UBXN7 UBX domain-containing protein 7 yes yes 0 0 1 1 By MS/MS 4 0 1 1 77.941 77.958 4 0.00031734 25869 20211116_3431_TMUAki_TMT10x_P_F4 73.788 57.797 2358400 3727300 0 3106200 2313600 5718500 3079500 4084500 3629900 4041400 3140400 2195700 3475700 169650 3251700 2236000 5627800 3100600 4234000 3651300 3948800 3044600 1 1 0 1 1 1 1 1 1 1 1 2358400 3727300 0 3106200 2313600 5718500 3079500 4084500 3629900 4041400 3140400 2195700 3475700 169650 3251700 2236000 5627800 3100600 4234000 3651300 3948800 3044600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1282600000 1282600000 0 12922 391 12007 68253 82503 82503 298 1 LTTLADLFRPPIDLMHK Unmodified 1980.0867 0.086653523 391 O94888 UBXN7 UBX domain-containing protein 7 yes yes 0 0 0 1 By MS/MS 5 0 1 1 79.07 79.081 4 2.4242E-07 25474 20211116_3444_TMUAki_TMT10x_S_F5 102.47 89.699 1955700 3108300 0 2605600 2817600 1990300 2537000 1589800 1354700 1795800 2350400 1820900 2898500 159930 2684500 2693600 2056500 2551400 1642800 1465300 1745400 2236600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1955700 3108300 0 2605600 2817600 1990300 2537000 1589800 1354700 1795800 2350400 1820900 2898500 159930 2684500 2693600 2056500 2551400 1642800 1465300 1745400 2236600 1 1 0 1 1 1 1 1 1 1 1 385830000 0 385830000 12923 391 12007 68254 82504 82504 1 LTTLELLEVR Unmodified 1185.6969 0.69688869 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 1.12 2 2 2 2 4 4 74.498 74.439 2 5.2404E-05 23810 20211116_3445_TMUAki_TMT10x_S_F6 132.13 89.738 34749000 57542000 116540 52670000 38531000 49165000 39229000 36240000 35583000 38303000 43228000 32355000 53674000 2925600 54023000 36963000 50011000 39642000 37560000 36631000 37323000 41463000 8 8 5 8 8 8 8 8 8 8 8 13747000 21465000 8844.2 20194000 15025000 26337000 15871000 14165000 13940000 14920000 16216000 12799000 20024000 1060100 20783000 14421000 26178000 15995000 15039000 14346000 14540000 15572000 3 3 1 3 3 3 3 3 3 3 3 21002000 36076000 107700 32476000 23507000 22827000 23357000 22075000 21644000 23383000 27012000 19556000 33650000 1865400 33241000 22541000 23833000 23647000 22521000 22284000 22783000 25891000 5 5 4 5 5 5 5 5 5 5 5 3024100000 1489400000 1534600000 12924 1475 12008 68255;68256;68257;68258;68259;68260;68261;68262 82505;82506;82507;82508;82509;82510;82511;82512 82512 8 LTTLPSDFCGLTHLVK Unmodified 1800.9444 0.94440596 2409 Q96AG4 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 2.02 2 4 11 1 2 2 5 17 68.596 68.551 3;4 5.5153E-47 24842 20211116_3440_TMUAki_TMT10x_S_F2 244.17 218.02 74991000 125460000 849260 116370000 80724000 122470000 80664000 68833000 63546000 74570000 88582000 69828000 117030000 6775100 119450000 77432000 123190000 81294000 72864000 66285000 72593000 84677000 20 20 15 20 20 20 20 20 20 20 20 47681000 77295000 668450 72313000 45727000 89568000 49650000 42383000 38977000 45780000 55026000 44398000 72106000 4279400 74381000 43967000 89122000 49826000 45575000 40689000 44571000 52585000 8 8 5 8 8 8 8 8 8 8 8 27310000 48165000 180820 44056000 34997000 32906000 31014000 26451000 24569000 28790000 33556000 25429000 44928000 2495600 45068000 33465000 34065000 31468000 27289000 25595000 28022000 32092000 12 12 10 12 12 12 12 12 12 12 12 34240000000 21086000000 13153000000 12925 2409 12009 68263;68264;68265;68266;68267;68268;68269;68270;68271;68272;68273;68274;68275;68276;68277;68278;68279;68280;68281;68282;68283;68284 82513;82514;82515;82516;82517;82518;82519;82520;82521;82522;82523;82524;82525;82526;82527;82528;82529;82530;82531;82532;82533;82534;82535;82536;82537;82538;82539 82523 27 LTTPTYGDLNHLVSATMSGVTTCLR Oxidation (M) 2723.3259 0.32585053 1418;1668;2689;539;488 P07437;P68371;Q13885;Q9BVA1;P04350 TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB4A Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain no no 0 0 1 0 By MS/MS By MS/MS 3.08 1.74 8 15 21 8 2 1 4 22 37 67.455 67.365 2;3;4 8.9246E-49 25145 20211116_3429_TMUAki_TMT10x_P_F2 212.39 195.63 284010000 507600000 2459100 440390000 322080000 542230000 320660000 347660000 311630000 388060000 366300000 264450000 473390000 16549000 455540000 308860000 541730000 325050000 364510000 319370000 377340000 351670000 97 97 53 97 97 97 97 97 97 97 97 152280000 269400000 1153100 227850000 148210000 329790000 152150000 182560000 160440000 203260000 183030000 141790000 251220000 7825100 236900000 142240000 326370000 154380000 193660000 163660000 197660000 175870000 36 36 17 36 36 36 36 36 36 36 36 131730000 238200000 1306000 212550000 173870000 212440000 168510000 165100000 151190000 184810000 183270000 122660000 222170000 8724100 218640000 166620000 215360000 170670000 170840000 155710000 179680000 175800000 61 61 36 61 61 61 61 61 61 61 61 338480000000 172860000000 165620000000 12926 539;1418;1668;2689;488 12010 68285;68286;68287;68288;68289;68290;68291;68292;68293;68294;68295;68296;68297;68298;68299;68300;68301;68302;68303;68304;68305;68306;68307;68308;68309;68310;68311;68312;68313;68314;68315;68316;68317;68318;68319;68320;68321;68322;68323;68324;68325;68326;68327;68328;68329;68330;68331;68332;68333;68334;68335;68336;68337;68338;68339;68340;68341;68342;68343 82540;82541;82542;82543;82544;82545;82546;82547;82548;82549;82550;82551;82552;82553;82554;82555;82556;82557;82558;82559;82560;82561;82562;82563;82564;82565;82566;82567;82568;82569;82570;82571;82572;82573;82574;82575;82576;82577;82578;82579;82580;82581;82582;82583;82584;82585;82586;82587;82588;82589;82590;82591;82592;82593;82594;82595;82596;82597;82598;82599;82600;82601;82602;82603;82604;82605;82606;82607;82608;82609;82610;82611;82612;82613;82614;82615;82616;82617;82618;82619;82620;82621;82622;82623;82624;82625;82626;82627;82628;82629;82630;82631;82632;82633;82634;82635;82636;82637;82638;82639 82555 384 100 LTTPTYGDLNHLVSATMSGVTTCLR Unmodified 2707.3309 0.33093591 1418;1668;2689;539;488 P07437;P68371;Q13885;Q9BVA1;P04350 TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB4A Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain no no 0 0 0 0 By MS/MS By MS/MS 3.49 0.914 2 3 12 21 3 23 18 84.124 84.103 2;3;4 1.2014E-115 26556 20211116_3442_TMUAki_TMT10x_S_F4 316.76 290.52 184530000 300210000 393670 335510000 178090000 207510000 205580000 67189000 53080000 93488000 170030000 171810000 280260000 7528300 337860000 171410000 216140000 202370000 76182000 64823000 90222000 160400000 59 59 21 59 59 59 59 59 59 59 59 117340000 176440000 216040 206210000 98233000 147990000 118790000 40617000 31309000 55154000 96679000 109250000 164750000 2471100 207390000 94698000 151940000 116710000 47151000 37999000 53268000 91239000 37 37 14 37 37 37 37 37 37 37 37 67194000 123770000 177630 129300000 79857000 59519000 86795000 26572000 21770000 38333000 73349000 62561000 115510000 5057200 130470000 76715000 64198000 85664000 29031000 26823000 36954000 69161000 22 22 7 22 22 22 22 22 22 22 22 242250000000 120390000000 121860000000 12927 539;1418;1668;2689;488 12010 68344;68345;68346;68347;68348;68349;68350;68351;68352;68353;68354;68355;68356;68357;68358;68359;68360;68361;68362;68363;68364;68365;68366;68367;68368;68369;68370;68371;68372;68373;68374;68375;68376;68377;68378;68379;68380;68381;68382;68383;68384 82640;82641;82642;82643;82644;82645;82646;82647;82648;82649;82650;82651;82652;82653;82654;82655;82656;82657;82658;82659;82660;82661;82662;82663;82664;82665;82666;82667;82668;82669;82670;82671;82672;82673;82674;82675;82676;82677;82678;82679;82680;82681;82682;82683;82684;82685;82686;82687;82688;82689;82690;82691;82692;82693;82694;82695;82696;82697;82698;82699;82700;82701;82702;82703;82704;82705;82706 82689 67 LTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRK Unmodified 3947.0033 0.0033411841 1418;1668;2689;539;488 P07437;P68371;Q13885;Q9BVA1;P04350 TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB4A Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain no no 0 0 0 2 By MS/MS 7 0 1 1 78.659 78.708 5 1.4406E-06 27734 20211116_3446_TMUAki_TMT10x_S_F7 65.134 57.468 5588200 9741500 24447 8643000 16337000 4189600 5510200 3550400 3375800 4187900 5612800 5203400 9085700 636630 8828300 15394000 4528500 6089300 3661200 3607000 4063900 5345200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5588200 9741500 24447 8643000 16337000 4189600 5510200 3550400 3375800 4187900 5612800 5203400 9085700 636630 8828300 15394000 4528500 6089300 3661200 3607000 4063900 5345200 1 1 1 1 1 1 1 1 1 1 1 1282300000 0 1282300000 12928 539;1418;1668;2689;488 12011 68385 82707 82707 1 LTVADALEPVQFEDGQK Unmodified 1858.9313 0.93125832 611 P10644;P10644-2 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 3.5 1.12 2 3 1 3 3 75.694 75.648 3 1.2968E-15 24776 20211116_3440_TMUAki_TMT10x_S_F2 150.37 132.86 18825000 32503000 288100 30456000 20623000 27275000 21605000 15160000 15791000 16886000 22205000 17530000 30321000 1854400 31168000 19817000 27709000 21684000 16076000 16547000 16420000 21222000 6 6 6 6 6 6 6 6 6 6 6 10130000 17504000 126080 15867000 9849500 16628000 10732000 8150300 8277500 8744300 12210000 9433200 16327000 953430 16314000 9473900 16702000 10764000 8732300 8667900 8515700 11657000 3 3 3 3 3 3 3 3 3 3 3 8694600 14999000 162020 14589000 10774000 10647000 10874000 7009200 7513800 8141200 9994700 8096700 13994000 900960 14853000 10343000 11008000 10920000 7343900 7879100 7904500 9564700 3 3 3 3 3 3 3 3 3 3 3 2452000000 1016300000 1435700000 12929 611 12012 68386;68387;68388;68389;68390;68391 82708;82709;82710;82711;82712;82713 82711 6 LTVEDLEK Unmodified 945.50188 0.50187728 1824 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 55.673 55.381 2 0.0018675 16546 20211116_3431_TMUAki_TMT10x_P_F4 111.74 46.701 7331000 10921000 0 14701000 12975000 9324700 7981100 7463500 9015800 7144800 10250000 6825300 10205000 619530 14650000 12312000 9789200 8388700 7672800 9170500 6991100 9850000 2 2 0 2 2 2 2 2 2 2 2 3587600 5061800 0 6668100 9340000 6684600 4412200 3734500 4425700 3576800 4869200 3340100 4729200 343060 6689400 8829500 6742500 4733500 3941100 4517500 3499800 4683400 1 1 0 1 1 1 1 1 1 1 1 3743400 5859700 0 8032700 3635400 2640100 3568900 3729000 4590100 3568000 5381300 3485200 5475900 276470 7960600 3482000 3046700 3655200 3731600 4653000 3491300 5166700 1 1 0 1 1 1 1 1 1 1 1 561760000 319290000 242470000 12930 1824 12013 68392;68393;68394;68395 82714;82715;82716;82717 82715 4 LTVEDLEKER Unmodified 1230.6456 0.6455814 1824 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 1 By MS/MS 4 0 1 1 46.709 46.899 3 0.0024429 13520 20211116_3442_TMUAki_TMT10x_S_F4 77.597 52.742 1409400 2515900 0 2532800 1395300 1690200 1274300 4727900 4440000 3488600 3290700 1312200 2347700 108890 2570100 1334400 1842100 1396900 4616600 4337700 3458200 3210000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1409400 2515900 0 2532800 1395300 1690200 1274300 4727900 4440000 3488600 3290700 1312200 2347700 108890 2570100 1334400 1842100 1396900 4616600 4337700 3458200 3210000 1 1 0 1 1 1 1 1 1 1 1 59224000 0 59224000 12931 1824 12014 68396 82718 82718 1 LTVEDLEKERDFYFGK Unmodified 1987.9891 0.98910755 1824 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 2 By MS/MS By MS/MS 5.86 1.25 1 2 2 1 1 5 2 69.319 69.411 4 3.3067E-35 23245 20211116_3435_TMUAki_TMT10x_P_F7 202.03 186.64 19698000 42260000 211700 18625000 46846000 103370000 44246000 137250000 104400000 99562000 67894000 18341000 39344000 2078600 21937000 44857000 100850000 46879000 136710000 102280000 98790000 66626000 6 6 4 6 6 6 6 6 6 6 6 10006000 21057000 46174 9443400 17125000 63664000 27684000 66633000 52303000 49938000 32101000 9316300 19605000 840320 11265000 16680000 61579000 28291000 67098000 51415000 49460000 31592000 4 4 2 4 4 4 4 4 4 4 4 9691100 21203000 165520 9181300 29720000 39711000 16562000 70614000 52099000 49624000 35793000 9024600 19740000 1238200 10672000 28176000 39266000 18588000 69608000 50868000 49330000 35033000 2 2 2 2 2 2 2 2 2 2 2 6182000000 3929600000 2252400000 12932 1824 12015 68397;68398;68399;68400;68401;68402;68403 82719;82720;82721;82722;82723;82724 82722 6 LTVEDPVTVEYITR Unmodified 1633.8563 0.85630246 137 O14818;O14818-2;O14818-4;Q8TAA3;Q8TAA3-2;Q8TAA3-5 PSMA7;PSMA8 Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like yes no 0 0 0 0 By MS/MS By MS/MS 3.12 1.17 1 1 3 2 1 5 3 67.059 66.929 2;3 8.6306E-51 23034 20211116_3430_TMUAki_TMT10x_P_F3 281.99 225.43 24273000 38524000 29337 37479000 19684000 29638000 21544000 14883000 15000000 16640000 23782000 22599000 35943000 1742600 38191000 18908000 30345000 21553000 15930000 15858000 16179000 22670000 7 7 2 7 7 7 7 7 7 7 7 21708000 34099000 29337 33325000 16581000 27006000 18848000 13034000 13253000 14797000 20998000 20210000 31815000 1526100 33957000 15943000 27588000 18826000 14010000 14003000 14379000 20016000 6 6 2 6 6 6 6 6 6 6 6 2565100 4425200 0 4153900 3103000 2631700 2696300 1849300 1746900 1842500 2784100 2388300 4128100 216520 4234100 2964800 2757300 2726900 1919500 1855500 1799800 2653600 1 1 0 1 1 1 1 1 1 1 1 3240800000 1988400000 1252400000 12933 137 12016 68404;68405;68406;68407;68408;68409;68410;68411 82725;82726;82727;82728;82729;82730;82731;82732;82733;82734 82728 10 LTVEEAVR Unmodified 915.50255 0.50254598 3206;1775 Q15149;Q15149-4;Q15149-2;Q15149-6;Q15149-9;Q15149-7;Q15149-8;Q15149-5;Q15149-3;Q9UPN3;Q9UPN3-5 PLEC;MACF1 Plectin;Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 no no 0 0 0 0 By MS/MS 3 0 1 1 38.22 38.262 2 0.037552 11238 20211116_3430_TMUAki_TMT10x_P_F3 65.465 12.68 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12934 1775;3206 12017 68412 82735 82735 1 LTVLPDEICNLK Unmodified 1413.7538 0.75375164 2213 Q8N9N7 LRRC57 Leucine-rich repeat-containing protein 57 yes yes 0 0 0 0 By MS/MS 6 0 1 1 73.394 73.338 3 0.0017578 23029 20211116_3434_TMUAki_TMT10x_P_F6 67.456 44.578 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12935 2213 12018 68413 82736 82736 1 LTVLPPELGNLDLTGQK Unmodified 1807.0091 0.0091147084 1801 Q15404;Q15404-2 RSU1 Ras suppressor protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 7 0.707 1 2 1 3 1 78.906 78.926 3 8.3157E-06 27825 20211116_3446_TMUAki_TMT10x_S_F7 95.073 78.194 23794000 36116000 0 35806000 22165000 33215000 24151000 20504000 18414000 20492000 26962000 22151000 33699000 1539400 36511000 21277000 33711000 24216000 21488000 19287000 20014000 25744000 4 4 0 4 4 4 4 4 4 4 4 18045000 25993000 0 25940000 14633000 26896000 16927000 14714000 13306000 15306000 19287000 16800000 24254000 1208700 26481000 14072000 27067000 16938000 15593000 13907000 14924000 18420000 3 3 0 3 3 3 3 3 3 3 3 5748500 10123000 0 9865700 7532900 6319400 7223600 5789600 5108000 5186500 7674600 5351000 9445000 330680 10030000 7204000 6644700 7277900 5895200 5380100 5090300 7324000 1 1 0 1 1 1 1 1 1 1 1 3314800000 1908700000 1406000000 12936 1801 12019 68414;68415;68416;68417 82737;82738;82739;82740 82740 4 LTVLSEER Unmodified 945.51311 0.51311067 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By matching 3 0 2 1 1 43.9 43.756 2 0.050216 13417 20211116_3430_TMUAki_TMT10x_P_F3 58.782 23.851 1145800 1920800 15915 2261200 3115800 3077900 1723200 1579500 1690000 1426500 1727600 1067000 1793600 137420 2295000 2953500 3051600 1819700 1677000 1722100 1399500 1665400 1 1 1 1 1 1 1 1 1 1 1 1145800 1920800 15915 2261200 3115800 3077900 1723200 1579500 1690000 1426500 1727600 1067000 1793600 137420 2295000 2953500 3051600 1819700 1677000 1722100 1399500 1665400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 49342000 26146000 23196000 12937 1663 12020 68418;68419 82741 82741 1 LTVNDFVR Unmodified 962.51853 0.5185304 3141 Q9UJS0;Q9UJS0-2;O75746;O75746-2 SLC25A13;SLC25A12 Calcium-binding mitochondrial carrier protein Aralar2;Calcium-binding mitochondrial carrier protein Aralar1 yes no 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 55.093 55.219 2 0.0051706 15944 20211116_3445_TMUAki_TMT10x_S_F6 89.542 62.678 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12938 3141 12021 68420;68421;68422 82742;82743;82744 82743 3 LTVQEEQIVELIEK Unmodified 1669.9138 0.91381734 1184 P52732 KIF11 Kinesin-like protein KIF11 yes yes 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 79.883 79.874 3 1.9589E-06 26431 20211116_3440_TMUAki_TMT10x_S_F2 109.83 88.269 4280000 6552800 131340 6900400 4149800 6840900 5081100 4362000 4281700 4752000 5640200 3986100 6115700 475420 7014100 4010400 6917100 5080500 4571800 4439000 4624900 5398900 2 2 2 2 2 2 2 2 2 2 2 2923500 4315500 91502 4681400 2504000 5227300 3344800 2938400 2825500 3221400 3836400 2722800 4028200 321780 4758100 2427600 5240100 3332700 3111600 2933100 3134600 3669600 1 1 1 1 1 1 1 1 1 1 1 1356500 2237200 39834 2219000 1645800 1613700 1736300 1423600 1456100 1530500 1803800 1263300 2087500 153640 2256000 1582800 1677000 1747800 1460200 1506000 1490400 1729300 1 1 1 1 1 1 1 1 1 1 1 1198700000 779010000 419710000 12939 1184 12022 68423;68424 82745;82746 82746 2 LTVVAQK Unmodified 757.46979 0.46978929 2350 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 41.575 41.909 2 0.030941 10354 20211116_3447_TMUAki_TMT10x_S_F8 79.469 4.2559 1993500 3285100 6602.3 3249900 1910000 1828100 2020100 2369300 2388700 2302100 2765300 1856200 3065200 166220 3296700 1834300 1962200 2054700 2379600 2427300 2251100 2655900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1993500 3285100 6602.3 3249900 1910000 1828100 2020100 2369300 2388700 2302100 2765300 1856200 3065200 166220 3296700 1834300 1962200 2054700 2379600 2427300 2251100 2655900 2 2 1 2 2 2 2 2 2 2 2 66241000 0 66241000 12940 2350 12023 68425;68426 82747;82748 82748 2 LTVVDTPGYGDAINCR Unmodified 1749.8356 0.83558379 1752 Q15019;Q15019-2;Q15019-3 SEPT2 Septin-2 yes no 0 0 0 0 By MS/MS By MS/MS 4.89 0.737 3 4 2 5 4 56.224 56.351 2;3 5.0233E-69 17198 20211116_3433_TMUAki_TMT10x_P_F5 300.98 273.65 34606000 60770000 512720 62452000 41492000 44833000 35310000 45043000 42531000 42264000 49365000 32225000 56711000 3416000 63329000 39659000 46764000 36364000 45703000 43195000 41392000 47409000 10 10 9 10 10 10 10 10 10 10 10 10754000 16865000 78784 18080000 18527000 24542000 14256000 12950000 12544000 12751000 14767000 10013000 15742000 1046500 18456000 17661000 24343000 14631000 13745000 12915000 12462000 14176000 4 4 3 4 4 4 4 4 4 4 4 23852000 43905000 433930 44372000 22965000 20291000 21054000 32094000 29987000 29512000 34598000 22212000 40969000 2369500 44873000 21998000 22421000 21733000 31958000 30280000 28930000 33233000 6 6 6 6 6 6 6 6 6 6 6 5111800000 2714100000 2397700000 12941 1752 12024 68427;68428;68429;68430;68431;68432;68433;68434;68435 82749;82750;82751;82752;82753;82754;82755;82756;82757;82758;82759 82752 11 LTVVILEAK Unmodified 984.62193 0.62193284 759 P21579 SYT1 Synaptotagmin-1 yes yes 0 0 0 0 By MS/MS 8 0 1 1 69.743 69.575 2 0.00034878 21606 20211116_3447_TMUAki_TMT10x_S_F8 91.867 17.402 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12942 759 12025 68436 82760 82760 1 LTWHAYPEDAENK Unmodified 1572.7209 0.72087161 1035 P45973 CBX5 Chromobox protein homolog 5 yes yes 0 0 0 0 By MS/MS By MS/MS 4.6 1.02 1 1 2 1 4 1 46.91 47.015 3 3.8005E-09 13408 20211116_3433_TMUAki_TMT10x_P_F5 122.46 92.021 10455000 17041000 65763 26073000 23710000 16755000 13374000 9293500 9983100 9250800 13357000 9735400 15934000 1106800 25822000 22478000 17476000 14001000 9824300 10424000 9036600 12780000 5 5 3 5 5 5 5 5 5 5 5 7239600 11662000 32827 16814000 21226000 14849000 11382000 7010200 6995800 6741500 9473800 6741000 10902000 819760 16760000 20107000 15072000 11925000 7515100 7396900 6595200 9062300 4 4 2 4 4 4 4 4 4 4 4 3215700 5378200 32936 9258900 2483700 1906000 1991700 2283300 2987300 2509300 3883100 2994400 5032900 287050 9061500 2371100 2403700 2076800 2309200 3027300 2441400 3718200 1 1 1 1 1 1 1 1 1 1 1 2006300000 1632500000 373800000 12943 1035 12026 68437;68438;68439;68440;68441 82761;82762;82763;82764;82765 82763 5 LTWHSCPEDEAQ Unmodified 1471.6038 0.60379294 1607 Q13185 CBX3 Chromobox protein homolog 3 yes yes 0 0 0 0 By MS/MS By MS/MS 2.4 1.02 1 2 1 1 3 2 43.114 42.97 2 1.1526E-08 14228 20211116_3441_TMUAki_TMT10x_S_F3 145.72 136.04 2379100 3943200 672.7 5703600 5843100 4480900 3258200 2888900 3435600 2491800 3774300 2214900 3686000 215290 5676000 5535700 4604500 3445600 3005700 3499400 2450000 3630500 5 5 1 5 5 5 5 5 5 5 5 1478100 2510000 672.7 3320300 5282100 4072900 2763500 1854600 2172800 1606700 2258100 1376100 2345200 156110 3341300 5000100 4052900 2916600 1990200 2239300 1579400 2175600 3 3 1 3 3 3 3 3 3 3 3 900980 1433200 0 2383300 560990 408000 494660 1034300 1262900 885080 1516200 838810 1340800 59178 2334700 535540 551560 529010 1015500 1260100 870570 1454800 2 2 0 2 2 2 2 2 2 2 2 492630000 288390000 204250000 12944 1607 12027 68442;68443;68444;68445;68446 82766;82767;82768;82769;82770;82771 82771 6 LTYTAEVSVPK Unmodified 1206.6496 0.64960415 589 P09960;P09960-2;P09960-4;P09960-3 LTA4H Leukotriene A-4 hydrolase yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 54.365 54.499 3 0.00014797 15339 20211116_3444_TMUAki_TMT10x_S_F5 86.344 63.466 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12945 589 12028 68447;68448 82772;82773 82773 2 LVAGEHGLIIR Unmodified 1176.6979 0.69789175 251 O43847;O43847-2 NRD1 Nardilysin yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 43.324 43.58 3 3.9874E-15 13175 20211116_3446_TMUAki_TMT10x_S_F7 194.12 144.68 2309600 3530200 35402 4015500 2869900 3138900 2176000 2869500 2990000 2565000 3104800 2150800 3295900 232320 4049100 2736500 3245700 2268700 2922000 3010300 2517700 2991600 3 3 3 3 3 3 3 3 3 3 3 905590 1346700 18438 1575900 1675700 1917600 1058900 1092500 1141000 963620 1205900 843330 1257500 103050 1596600 1592300 1913900 1108900 1148500 1159400 946430 1161300 1 1 1 1 1 1 1 1 1 1 1 1404100 2183500 16963 2439600 1194200 1221200 1117100 1777000 1849100 1601400 1899000 1307400 2038400 129280 2452500 1144100 1331800 1159800 1773400 1850800 1571300 1830300 2 2 2 2 2 2 2 2 2 2 2 729110000 252440000 476670000 12946 251 12029 68449;68450;68451;68452 82774;82775;82776;82777 82777 4 LVAGEMGQNEPDQGGQR Oxidation (M) 1800.8061 0.80607458 2598 Q99714;Q99714-2 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 0 0 1 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 32.934 32.78 3 9.4552E-09 8588 20211116_3429_TMUAki_TMT10x_P_F2 120.32 109.37 469730 776970 0 893350 877000 790000 566810 444220 505810 428860 639510 437320 725430 39327 901600 832770 803400 589270 468640 521990 419480 612770 2 2 0 2 2 2 2 2 2 2 2 326470 530640 0 601970 738480 668000 425850 279460 321860 283680 416360 303950 495410 29504 610060 700010 667710 445090 303870 335340 276890 398730 1 1 0 1 1 1 1 1 1 1 1 143260 246330 0 291380 138520 121990 140960 164760 183950 145180 223150 133380 230020 9823.2 291540 132760 135690 144190 164770 186650 142590 214050 1 1 0 1 1 1 1 1 1 1 1 126110000 106050000 20053000 12947 2598 12030 68453;68454;68455;68456;68457 82778;82779;82780;82781 82778 2836 4 LVAGSTDQLLSAFVPPEEPPLQPAR Unmodified 2631.3908 0.39081727 1679 Q14137;Q14137-2 BOP1 Ribosome biogenesis protein BOP1 yes no 0 0 0 0 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 79.798 79.799 3 2.0766E-26 27765 20211116_3435_TMUAki_TMT10x_P_F7 145.55 129.42 2992000 5639500 117650 5749500 4255300 4420500 4449300 2740400 2574800 2977700 4501900 2786700 5262700 375390 5837800 4092100 4547500 4445000 2878100 2769900 2898400 4283200 3 3 3 3 3 3 3 3 3 3 3 859100 1753300 53048 1698800 928570 1808500 1164000 845890 715810 912400 1073300 800300 1635800 121640 1738600 899490 1813900 1154500 910610 760510 888360 1024300 1 1 1 1 1 1 1 1 1 1 1 2132900 3886200 64604 4050700 3326700 2612000 3285300 1894500 1859000 2065300 3428600 1986400 3626900 253760 4099300 3192700 2733600 3290500 1967500 2009400 2010000 3258900 2 2 2 2 2 2 2 2 2 2 2 3264100000 900900000 2363200000 12948 1679 12031 68458;68459;68460;68461;68462;68463 82782;82783;82784;82785;82786 82783 5 LVAIVDPHIK Unmodified 1103.6703 0.67028001 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.745 1 2 3 2 4 55.293 55.625 3 9.8331E-05 16115 20211116_3445_TMUAki_TMT10x_S_F6 86.898 60.456 12622000 18355000 78295 20749000 17336000 17952000 13283000 13945000 14311000 13280000 15806000 11753000 17136000 1116000 20956000 16521000 18371000 13718000 14361000 14567000 12997000 15201000 4 4 3 4 4 4 4 4 4 4 4 5975700 8206500 8112.2 9140400 10481000 11618000 6472400 6392400 6742600 6108600 7004600 5563400 7661000 496570 9295800 9945100 11565000 6783200 6754600 6857000 5977700 6749000 2 2 1 2 2 2 2 2 2 2 2 6646800 10149000 70182 11609000 6854900 6334500 6810900 7552600 7568700 7170900 8801000 6189300 9475300 619390 11661000 6576000 6805900 6934400 7606000 7710500 7019200 8451900 2 2 2 2 2 2 2 2 2 2 2 3611500000 1771100000 1840400000 12949 1730 12032 68464;68465;68466;68467;68468;68469 82787;82788;82789;82790;82791;82792 82789 6 LVAIVDVIDQNR Unmodified 1353.7616 0.76161421 1145 P50914 RPL14 60S ribosomal protein L14 yes yes 0 0 0 0 By MS/MS By MS/MS 5.78 1.5 1 2 2 4 8 8 2 18 9 60.499 60.524 2;3 1.1217E-30 26089 20211116_3433_TMUAki_TMT10x_P_F5 270.19 233.79 153070000 254100000 570540 219940000 173810000 228230000 172820000 149530000 134490000 153890000 180010000 142520000 236970000 12117000 226910000 166580000 230230000 174160000 156140000 140110000 150120000 172240000 24 24 10 24 24 24 24 24 24 24 24 86882000 139930000 464000 122550000 88796000 159830000 99308000 83688000 77998000 84997000 101740000 80895000 130510000 7204100 126810000 85404000 158810000 99523000 88970000 81125000 82959000 97414000 16 16 8 16 16 16 16 16 16 16 16 66193000 114160000 106540 97389000 85015000 68402000 73508000 65845000 56490000 68897000 78269000 61626000 106460000 4913100 100100000 81172000 71414000 74637000 67167000 58986000 67162000 74829000 8 8 2 8 8 8 8 8 8 8 8 29945000000 14018000000 15926000000 12950 1145 12033 68470;68471;68472;68473;68474;68475;68476;68477;68478;68479;68480;68481;68482;68483;68484;68485;68486;68487;68488;68489;68490;68491;68492;68493;68494;68495;68496 82793;82794;82795;82796;82797;82798;82799;82800;82801;82802;82803;82804;82805;82806;82807;82808;82809;82810;82811;82812;82813;82814;82815;82816;82817;82818;82819;82820;82821;82822;82823 82796 31 LVANHVASDISLTGGSVVQR Unmodified 2022.0858 0.0858019 3091 Q9UBV2 SEL1L Protein sel-1 homolog 1 yes yes 0 0 0 0 By MS/MS 7 0 1 1 51.281 51.773 3 3.4097E-13 16569 20211116_3446_TMUAki_TMT10x_S_F7 133.95 120.27 2701000 4516100 14983 4552100 2775000 2534400 2140700 3785800 3766000 3354500 3851300 2514900 4214100 228520 4611100 2645100 2734400 2254900 3773100 3763200 3294000 3712600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2701000 4516100 14983 4552100 2775000 2534400 2140700 3785800 3766000 3354500 3851300 2514900 4214100 228520 4611100 2645100 2734400 2254900 3773100 3763200 3294000 3712600 2 2 1 2 2 2 2 2 2 2 2 227720000 0 227720000 12951 3091 12034 68497 82824;82825 82824 2 LVARPEPATGYTLEFR Unmodified 1818.9628 0.96283322 1859 Q16658 FSCN1 Fascin yes yes 0 0 0 1 By MS/MS By MS/MS 5.65 2.27 2 2 2 3 4 4 8 9 53.614 53.768 2;3 3.0179E-91 15657 20211116_3436_TMUAki_TMT10x_P_F8 342.81 296.79 185170000 308670000 1288300 319100000 207940000 218910000 179260000 186790000 180130000 181560000 209610000 172410000 288060000 15241000 323300000 198640000 228470000 183360000 191380000 184260000 177540000 201300000 20 20 12 20 20 20 20 20 20 20 20 50770000 83535000 327870 87021000 63798000 96837000 58940000 53447000 48995000 51413000 60675000 47271000 77960000 4243400 88677000 61040000 97071000 59731000 56470000 50694000 50296000 58170000 9 9 4 9 9 9 9 9 9 9 9 134400000 225140000 960390 232080000 144140000 122070000 120320000 133340000 131140000 130150000 148940000 125140000 210100000 10997000 234620000 137590000 131400000 123630000 134910000 133570000 127240000 143130000 11 11 8 11 11 11 11 11 11 11 11 107510000000 53753000000 53761000000 12952 1859 12035 68498;68499;68500;68501;68502;68503;68504;68505;68506;68507;68508;68509;68510;68511;68512;68513;68514 82826;82827;82828;82829;82830;82831;82832;82833;82834;82835;82836;82837;82838;82839;82840;82841;82842;82843;82844;82845;82846;82847 82833 22 LVDLPLGLPFYK Unmodified 1373.7959 0.79587446 1718 Q14669;Q14669-3;Q14669-4;Q14669-2 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes no 0 0 0 0 By MS/MS By MS/MS 2.43 0.495 4 3 4 3 80.746 80.718 2;3 9.7885E-09 29523 20211116_3441_TMUAki_TMT10x_S_F3 147.95 100.12 5484200 8929700 74886 8488700 6333700 6991800 7171300 4705000 4245300 5201300 6718200 5106500 8330800 488680 8668600 6095500 7163800 7139800 4914000 4534700 5059500 6404300 3 3 2 3 3 3 3 3 3 3 3 1525400 2267000 25640 2338800 1369500 2424100 1679900 1435600 1255900 1424900 1724100 1420500 2115600 148180 2382200 1322500 2442000 1674600 1509100 1312800 1392100 1648700 1 1 1 1 1 1 1 1 1 1 1 3958800 6662800 49246 6149900 4964200 4567800 5491400 3269400 2989500 3776400 4994100 3686000 6215100 340490 6286400 4773000 4721800 5465100 3404800 3221900 3667400 4755600 2 2 1 2 2 2 2 2 2 2 2 1350500000 733410000 617130000 12953 1718 12036 68515;68516;68517;68518;68519;68520;68521 82848;82849;82850;82851 82851 4 LVDPERDMSLR Oxidation (M) 1345.666 0.66599927 1709 Q14444;Q14444-2 CAPRIN1 Caprin-1 yes no 0 0 1 1 By MS/MS By MS/MS 2.83 1.07 1 1 2 2 4 2 36.233 36.16 3 0.0093107 11436 20211116_3441_TMUAki_TMT10x_S_F3 61.989 38.845 3761300 5878100 36529 6778600 5009800 4774300 3992000 4022400 4608400 3519600 4872000 3502300 5488300 352790 6821700 4779600 4970400 4121600 4112600 4670600 3458100 4691700 6 6 3 6 6 6 6 6 6 6 6 1224400 1724300 28330 1981500 2717200 2696300 1420300 1303000 1629200 1124600 1576200 1140200 1609900 146640 2014000 2574400 2671500 1514900 1389800 1646400 1105700 1522100 2 2 1 2 2 2 2 2 2 2 2 2536900 4153800 8199 4797000 2292600 2077900 2571700 2719500 2979200 2394900 3295800 2362100 3878400 206150 4807700 2205200 2299000 2606600 2722900 3024200 2352400 3169500 4 4 2 4 4 4 4 4 4 4 4 1061800000 596550000 465210000 12954 1709 12037 68522;68523;68524;68525;68526;68527 82852;82853;82854;82855;82856 82856 2296 5 LVDPERDMSLR Unmodified 1329.6711 0.67108465 1709 Q14444;Q14444-2 CAPRIN1 Caprin-1 yes no 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 45.664 45.779 3 7.9743E-08 13013 20211116_3442_TMUAki_TMT10x_S_F4 140.57 109.43 5135100 7456900 15638 10122000 8493100 6545500 5141300 3398900 3220300 3118000 5963000 4781400 6968000 484850 10084000 8060100 6818000 5330800 3606200 3457500 3056800 5667400 3 3 1 3 3 3 3 3 3 3 3 3355000 4542100 15638 6396200 7042100 5614100 3933600 2295300 2089200 2042000 3860600 3123900 4245200 342900 6382500 6675000 5692900 4095500 2493700 2269000 2004800 3669400 2 2 1 2 2 2 2 2 2 2 2 1780100 2914700 0 3725700 1450900 931380 1207700 1103600 1131100 1076000 2102400 1657500 2722800 141960 3701800 1385000 1125100 1235400 1112500 1188500 1052000 1998100 1 1 0 1 1 1 1 1 1 1 1 809920000 430050000 379870000 12955 1709 12037 68528;68529;68530 82857;82858;82859 82859 3 LVDPLYSIK Unmodified 1046.6012 0.60119739 1058 P46926;P46926-2 GNPDA1 Glucosamine-6-phosphate isomerase 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 1 3 68.515 68.914 2 3.1697E-05 21338 20211116_3447_TMUAki_TMT10x_S_F8 113.71 72.404 26042000 43337000 194620 41199000 32450000 39688000 26202000 31726000 26771000 29711000 31928000 24249000 40430000 2361900 42158000 30965000 40346000 26922000 32598000 27393000 29100000 30640000 2 2 1 2 2 2 2 2 2 2 2 11456000 19354000 194620 17761000 16853000 27444000 13877000 14328000 12135000 12911000 14508000 10668000 18053000 1206800 18376000 16097000 27066000 14178000 15187000 12506000 12668000 13921000 1 1 1 1 1 1 1 1 1 1 1 14586000 23983000 0 23438000 15597000 12244000 12325000 17399000 14636000 16800000 17420000 13581000 22377000 1155200 23782000 14868000 13280000 12744000 17412000 14887000 16432000 16718000 1 1 0 1 1 1 1 1 1 1 1 1853300000 891650000 961670000 12956 1058 12038 68531;68532;68533;68534 82860;82861;82862;82863 82862 4 LVDQNIFSFYLSR Unmodified 1600.8249 0.82494275 536 P07339 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes yes 0 0 0 0 By MS/MS 3 0 1 1 79.888 79.815 2 1.2341E-05 28161 20211116_3430_TMUAki_TMT10x_P_F3 99.5 63.556 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12957 536 12039 68535 82864 82864 1 LVDQSGPPHEPK Unmodified 1302.6568 0.65681479 1242 P55265;P55265-5;P55265-4;P55265-3;P55265-2 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 33.89 33.801 3 7.9533E-05 7985 20211116_3431_TMUAki_TMT10x_P_F4 95.264 75.503 2288600 3667500 21313 3662500 4220400 4111000 2925300 2334300 2588300 2266700 2966200 2131000 3422200 227840 3743400 4014900 4120400 3024500 2461000 2661300 2216600 2849700 3 3 2 3 3 3 3 3 3 3 3 1801100 2873500 21313 2834600 3688900 3616900 2351700 1756700 2034900 1786200 2300800 1677200 2681100 195630 2906200 3504700 3594600 2445600 1880800 2093400 1743300 2211300 2 2 2 2 2 2 2 2 2 2 2 487500 794020 0 827900 531550 494090 573530 577580 553430 480550 665380 453840 741040 32211 837210 510160 525810 578930 580130 567880 473330 638400 1 1 0 1 1 1 1 1 1 1 1 105900000 90594000 15307000 12958 1242 12040 68536;68537;68538 82865;82866;82867 82866 3 LVDTFLEDVK Unmodified 1177.6231 0.62305505 45 CON__P34955 yes yes 0 0 0 0 By MS/MS By MS/MS 2.62 1.32 2 2 2 1 1 3 5 78.189 78.148 2 3.2212E-08 25516 20211116_3428_TMUAki_TMT10x_P_F1 163.16 107.63 + 137540000 217620000 7354300 190490000 196370000 239710000 201710000 235740000 216500000 234680000 216150000 128120000 202960000 19005000 196980000 188860000 241070000 204780000 239850000 219590000 229250000 208520000 8 8 7 8 8 8 8 8 8 8 8 62738000 94775000 3290400 83238000 77491000 142740000 100900000 110690000 109240000 108630000 99046000 58440000 88392000 8474600 86621000 75090000 141030000 101380000 114100000 110410000 106170000 95861000 3 3 3 3 3 3 3 3 3 3 3 74807000 122850000 4064000 107250000 118880000 96964000 100800000 125050000 107250000 126060000 117100000 69682000 114570000 10531000 110360000 113770000 100050000 103390000 125750000 109180000 123070000 112660000 5 5 4 5 5 5 5 5 5 5 5 9223800000 4275400000 4948400000 12959 45 12041 68539;68540;68541;68542;68543;68544;68545;68546 82868;82869;82870;82871;82872;82873;82874;82875 82868 8 LVEAEVHR Unmodified 951.51378 0.51377937 1221 P54619;P54619-2;P54619-3 PRKAG1 5'-AMP-activated protein kinase subunit gamma-1 yes no 0 0 0 0 By matching By MS/MS 2.5 0.5 1 1 1 1 31.406 31.166 3 0.0032543 9524 20211116_3441_TMUAki_TMT10x_S_F3 85.666 69.193 745700 1265100 0 1334600 708570 569970 635030 348650 342640 378460 675850 694210 1180700 47802 1345200 676690 622840 638930 366540 373200 368400 641660 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 745700 1265100 0 1334600 708570 569970 635030 348650 342640 378460 675850 694210 1180700 47802 1345200 676690 622840 638930 366540 373200 368400 641660 1 1 0 1 1 1 1 1 1 1 1 53539000 42614000 10926000 12960 1221 12042 68547;68548 82876 82876 1 LVEAISR Unmodified 786.45995 0.45995289 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 40.271 40.431 2 0.027657 10865 20211116_3442_TMUAki_TMT10x_S_F4 77.923 13.165 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12961 1695 12043 68549;68550 82877;82878 82877 2 LVEALCAEHQINLIK Unmodified 1749.9447 0.94474031 801 P25398 RPS12 40S ribosomal protein S12 yes yes 0 0 0 0 By MS/MS By MS/MS 6.32 1.13 2 2 5 8 2 12 7 62.303 62.446 2;3;4 1.3729E-37 20399 20211116_3434_TMUAki_TMT10x_P_F6 247.88 212.66 293790000 486160000 4507100 516730000 336740000 427330000 316220000 356110000 305750000 344670000 368440000 273580000 453750000 28633000 523660000 322600000 438370000 321500000 365320000 313720000 336740000 353480000 30 30 21 30 30 29 30 30 29 29 30 150910000 241220000 3053600 259170000 190160000 299680000 183290000 177680000 151620000 178210000 185160000 140540000 225150000 15826000 263740000 182340000 300050000 185290000 186830000 156820000 174030000 177580000 17 17 13 17 17 17 17 17 17 17 17 142880000 244940000 1453600 257560000 146580000 127650000 132930000 178420000 154130000 166450000 183280000 133040000 228600000 12807000 259920000 140260000 138320000 136210000 178490000 156900000 162710000 175900000 13 13 8 13 13 12 13 13 12 12 13 82802000000 41484000000 41318000000 12962 801 12044 68551;68552;68553;68554;68555;68556;68557;68558;68559;68560;68561;68562;68563;68564;68565;68566;68567;68568;68569 82879;82880;82881;82882;82883;82884;82885;82886;82887;82888;82889;82890;82891;82892;82893;82894;82895;82896;82897;82898;82899;82900;82901;82902;82903;82904;82905;82906;82907;82908;82909 82885 31 LVEALCAEHQINLIKVDDNK Unmodified 2321.2049 0.20493076 801 P25398 RPS12 40S ribosomal protein S12 yes yes 0 0 0 1 By matching By MS/MS 5.75 0.829 2 1 1 1 3 65.339 65.474 4 2.389E-24 19933 20211116_3444_TMUAki_TMT10x_S_F5 168.2 148.65 29200000 49098000 591140 45061000 35294000 25574000 24317000 27396000 30793000 31326000 35786000 27191000 45798000 2832700 45963000 33587000 27296000 25440000 27880000 31220000 30433000 34367000 5 5 4 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29200000 49098000 591140 45061000 35294000 25574000 24317000 27396000 30793000 31326000 35786000 27191000 45798000 2832700 45963000 33587000 27296000 25440000 27880000 31220000 30433000 34367000 5 5 4 5 5 5 5 5 5 5 5 3518200000 604190000 2914000000 12963 801 12045 68570;68571;68572;68573 82910;82911;82912;82913;82914 82911 5 LVEARPMIHELLTEGR Oxidation (M) 1878.9986 0.9985668 1739 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 1 1 By MS/MS By MS/MS 5.7 0.9 1 3 4 2 5 5 46.932 47.148 3;4 4.5247E-15 12260 20211116_3434_TMUAki_TMT10x_P_F6 149.22 127.9 19151000 31712000 394750 32504000 32019000 37342000 22994000 34806000 32065000 28528000 30212000 17835000 29594000 2112700 33176000 30497000 37686000 24076000 35329000 32158000 28121000 29202000 13 13 12 13 13 13 13 13 13 13 13 11349000 19064000 205790 19407000 23965000 30019000 16069000 21555000 19925000 17606000 18128000 10568000 17790000 1286200 19932000 22791000 29736000 16832000 22224000 20038000 17358000 17543000 8 8 7 8 8 8 8 8 8 8 8 7802600 12648000 188960 13098000 8053900 7323300 6924400 13251000 12140000 10922000 12085000 7266400 11804000 826510 13244000 7705500 7949900 7244200 13104000 12120000 10763000 11659000 5 5 5 5 5 5 5 5 5 5 5 4344200000 2325500000 2018600000 12964 1739 12046 68574;68575;68576;68577;68578;68579;68580;68581;68582;68583 82915;82916;82917;82918;82919;82920;82921;82922;82923;82924;82925;82926;82927;82928 82919 2342 14 LVEARPMIHELLTEGRR Unmodified 2019.1048 0.1047632 1739 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 2 By MS/MS By MS/MS 5 3.46 3 4 3 4 51.511 51.427 4;5 7.6449E-37 14708 20211116_3436_TMUAki_TMT10x_P_F8 217.91 191.19 10538000 15921000 60190 17393000 14866000 16097000 11136000 11804000 10353000 10888000 13134000 9811800 14862000 949930 17620000 14161000 16382000 11466000 12190000 10665000 10672000 12584000 9 9 3 9 9 9 9 9 9 9 9 6544400 9398400 26199 10461000 10439000 12757000 7832600 6872600 5939600 6318500 7803100 6093500 8773700 603290 10632000 9944600 12722000 8022700 7267900 6191500 6193800 7469700 5 5 2 5 5 5 5 5 5 5 5 3993300 6522900 33991 6931600 4426600 3340200 3303100 4931000 4413400 4569600 5330600 3718300 6088100 346640 6988800 4216800 3660100 3443600 4922400 4473800 4477800 5113900 4 4 1 4 4 4 4 4 4 4 4 1786400000 1050300000 736090000 12965 1739 12047 68584;68585;68586;68587;68588;68589;68590 82929;82930;82931;82932;82933;82934;82935;82936;82937 82931 9 LVEARPMIHELLTEGRR Oxidation (M) 2035.0997 0.099677825 1739 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 1 2 By MS/MS By MS/MS 8 0 2 1 1 40.991 41.168 4;5 1.9413E-07 10440 20211116_3436_TMUAki_TMT10x_P_F8 106.93 85.696 1821400 2893400 33625 2912700 2128600 2491000 1636300 3443200 3306800 2831200 2879900 1696000 2699900 159260 2963800 2028900 2585100 1737300 3434500 3275800 2790300 2791400 2 2 1 2 2 2 2 2 2 2 2 490980 721910 33625 904790 791440 1143000 672610 835880 730540 593670 707160 457410 674310 76252 913680 757920 1142800 690260 858110 739840 589780 682900 1 1 1 1 1 1 1 1 1 1 1 1330500 2171500 0 2007900 1337200 1348100 963730 2607400 2576200 2237500 2172700 1238600 2025600 83009 2050100 1271000 1442300 1047000 2576400 2536000 2200500 2108500 1 1 0 1 1 1 1 1 1 1 1 726510000 529510000 197000000 12966 1739 12047 68591;68592 82938;82939 82938 2342 2 LVEDEERR Unmodified 1044.52 0.51998696 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 28.083 27.964 3 0.0028565 5146 20211116_3428_TMUAki_TMT10x_P_F1 96.367 59.666 141620 246980 822.48 191240 162670 214270 133610 103820 81815 105280 162260 131870 230250 12803 199380 155300 214380 135450 111170 88354 102760 154030 1 1 1 1 1 1 1 1 1 1 1 141620 246980 822.48 191240 162670 214270 133610 103820 81815 105280 162260 131870 230250 12803 199380 155300 214380 135450 111170 88354 102760 154030 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5141500 5141500 0 12967 1695 12048 68593;68594 82940 82940 1 LVEEEVNIPNRR Unmodified 1466.7841 0.78414057 3036 Q9NZL9;Q9NZL9-3 MAT2B Methionine adenosyltransferase 2 subunit beta yes no 0 0 0 1 By MS/MS By MS/MS 3.14 0.833 2 2 3 3 4 36.908 36.866 3 1.019E-19 12939 20211116_3441_TMUAki_TMT10x_S_F3 228.83 172.71 5740500 9079900 51788 9359700 9013300 8439600 6264700 6635200 7036300 6117700 7523700 5345100 8473600 533300 9514900 8574100 8613900 6522200 6821800 7141700 5996200 7242700 7 7 5 7 7 7 7 7 7 7 7 3096000 4727400 15906 4956500 6280300 6128400 3512700 3594100 3799000 3242000 3875500 2882600 4412000 288850 5057800 5951500 6114000 3716600 3771600 3855000 3180800 3736100 3 3 2 3 3 3 3 3 3 3 3 2644500 4352500 35883 4403200 2733000 2311200 2752100 3041200 3237300 2875800 3648200 2462500 4061600 244450 4457100 2622600 2499900 2805600 3050200 3286700 2815400 3506600 4 4 3 4 4 4 4 4 4 4 4 635340000 411150000 224190000 12968 3036 12049 68595;68596;68597;68598;68599;68600;68601 82941;82942;82943;82944;82945;82946;82947;82948 82946 8 LVEGILHAPDAGWGNLVYVVNYPK Unmodified 2623.3799 0.37985866 1600 Q13148 TARDBP TAR DNA-binding protein 43 yes yes 0 0 0 0 By MS/MS 2 0 1 1 79.632 79.616 3 1.0644E-11 27599 20211116_3429_TMUAki_TMT10x_P_F2 114.72 92.917 1859400 2911200 2474.2 2538000 1801100 2628900 2214200 850620 1025500 1407500 1814700 1731300 2715100 155650 2616900 1737500 2632600 2187600 971270 1123300 1351700 1726100 1 1 1 1 1 1 1 1 1 1 1 1859400 2911200 2474.2 2538000 1801100 2628900 2214200 850620 1025500 1407500 1814700 1731300 2715100 155650 2616900 1737500 2632600 2187600 971270 1123300 1351700 1726100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 406630000 406630000 0 12969 1600 12050 68602 82949 82949 1 LVEHFCAEFK Unmodified 1278.6067 0.60669348 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 0 By MS/MS By MS/MS 4.77 1.48 1 2 2 4 2 2 7 6 53.669 53.817 2;3 1.5208E-05 16216 20211116_3433_TMUAki_TMT10x_P_F5 105.2 88.992 112330000 177560000 1361000 190830000 142380000 140190000 115290000 122470000 106660000 117600000 137940000 104590000 165740000 10151000 192980000 135860000 145540000 118090000 125270000 110000000 115060000 132100000 15 15 9 15 15 15 15 15 15 15 15 32764000 50500000 173090 54722000 49870000 63510000 36693000 35250000 29703000 32757000 39855000 30507000 47137000 2964400 55658000 47487000 63523000 37692000 37191000 30883000 32095000 38132000 5 5 2 5 5 5 5 5 5 5 5 79565000 127070000 1187900 136110000 92508000 76678000 78595000 87219000 76962000 84845000 98088000 74086000 118600000 7186600 137320000 88378000 82017000 80399000 88076000 79116000 82962000 93968000 10 10 7 10 10 10 10 10 10 10 10 14724000000 6661000000 8063200000 12970 2345 12051 68603;68604;68605;68606;68607;68608;68609;68610;68611;68612;68613;68614;68615 82950;82951;82952;82953;82954;82955;82956;82957;82958;82959;82960;82961;82962;82963;82964;82965;82966 82954 17 LVEKPSPLTLAPHDFANIK Unmodified 2089.1572 0.15717593 1206 P53618 COPB1 Coatomer subunit beta yes yes 0 0 0 1 By MS/MS By MS/MS 2.8 2.64 2 2 1 3 2 63.497 63.374 4 1.17E-17 19481 20211116_3436_TMUAki_TMT10x_P_F8 152.18 135.3 39845000 64173000 1234500 62646000 48727000 66479000 47134000 51624000 47110000 47299000 51152000 37108000 59875000 4473400 64074000 46749000 67154000 47893000 53108000 48071000 46373000 49219000 5 5 4 5 5 5 5 5 5 5 5 22549000 37349000 995710 33525000 32536000 50137000 30508000 33194000 29501000 28542000 28887000 21003000 34837000 2937300 34720000 31206000 49671000 31020000 34465000 30035000 28067000 27886000 3 3 3 3 3 3 3 3 3 3 3 17296000 26824000 238810 29121000 16191000 16342000 16626000 18430000 17609000 18757000 22265000 16106000 25038000 1536100 29355000 15544000 17483000 16873000 18643000 18036000 18306000 21334000 2 2 1 2 2 2 2 2 2 2 2 9433000000 5639300000 3793700000 12971 1206 12052 68616;68617;68618;68619;68620 82967;82968;82969;82970;82971 82969 5 LVELNEDVRPHIR Unmodified 1588.8685 0.8685389 1522 Q05D32;Q05D32-2 CTDSPL2 CTD small phosphatase-like protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 42.929 43.08 4 3.1851E-06 11656 20211116_3431_TMUAki_TMT10x_P_F4 112.5 94.833 1266900 1988400 5929.3 2269900 2102500 2093300 1546600 1598200 1628000 1579500 1596600 1179600 1856400 118560 2293100 2002100 2132300 1600400 1649300 1651500 1543400 1541200 2 2 1 2 2 2 2 2 2 2 2 807710 1224400 0 1457500 1626000 1684600 1109100 1007200 1074400 1049500 974860 752030 1143400 74725 1473800 1545800 1686900 1150900 1059500 1091000 1023200 943490 1 1 0 1 1 1 1 1 1 1 1 459170 763950 5929.3 812420 476490 408740 437560 591000 553570 530020 621750 427580 713020 43837 819340 456260 445390 449460 589860 560510 520160 597670 1 1 1 1 1 1 1 1 1 1 1 210240000 132780000 77460000 12972 1522 12053 68621;68622 82972;82973 82972 2 LVESDAEAEAVREVYER Unmodified 1963.9487 0.9486993 2740 Q9BZJ0;Q9BZJ0-2;Q9BZJ0-3 CRNKL1 Crooked neck-like protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 57.402 57.166 3 7.1631E-53 16916 20211116_3428_TMUAki_TMT10x_P_F1 263.2 231.28 23803000 39180000 229310 43209000 25826000 31461000 24779000 29883000 29672000 28332000 31576000 22163000 36574000 2087400 43620000 24742000 32740000 25341000 30417000 30039000 27734000 30402000 6 6 5 6 6 6 6 6 6 6 6 7313400 10855000 92878 12223000 9832700 15409000 9091700 9359100 9120000 9214500 9879700 6810200 10134000 728170 12421000 9415000 15366000 9261700 9816700 9303700 9005300 9507100 2 2 2 2 2 2 2 2 2 2 2 16489000 28325000 136430 30986000 15993000 16052000 15687000 20524000 20552000 19117000 21697000 15353000 26440000 1359200 31199000 15327000 17374000 16079000 20600000 20736000 18729000 20894000 4 4 3 4 4 4 4 4 4 4 4 3591400000 2152400000 1439000000 12973 2740 12054 68623;68624;68625;68626;68627 82974;82975;82976;82977;82978;82979 82974 6 LVEVDSGR Unmodified 873.4556 0.45559579 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.1 2.62 2 2 1 1 1 1 2 4 6 35.511 35.6 2 1.1977E-15 9970 20211116_3429_TMUAki_TMT10x_P_F2 257.47 175.08 8509600 13125000 20112 13913000 9869400 11702000 9295000 8027100 9330200 8249400 10418000 7922800 12250000 673800 14105000 9445500 11975000 9459400 8353500 9528900 8047600 10016000 11 11 5 11 11 11 11 11 11 11 11 3650900 5409300 898.25 5696200 4945600 6610800 4015800 3309600 3953800 3552000 4247900 3399000 5048500 270280 5804500 4715400 6604100 4120100 3538800 4035500 3459100 4088700 3 3 1 3 3 3 3 3 3 3 3 4858600 7715500 19214 8216900 4923800 5090900 5279200 4717500 5376400 4697400 6170300 4523900 7201200 403530 8300400 4730000 5370700 5339300 4814700 5493500 4588500 5927700 8 8 4 8 8 8 8 8 8 8 8 894220000 401900000 492320000 12974 748 12055 68628;68629;68630;68631;68632;68633;68634;68635;68636;68637 82980;82981;82982;82983;82984;82985;82986;82987;82988;82989;82990;82991 82981 12 LVEVDSSR Unmodified 903.46616 0.46616048 1505 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 36.107 35.869 2 0.0023929 11363 20211116_3441_TMUAki_TMT10x_S_F3 110.12 34.926 1530100 2404000 20898 2404400 2399900 2530600 2036900 1771300 1949100 1689900 2123100 1424800 2243200 152800 2454700 2292900 2553200 2082400 1836800 1992900 1653800 2042700 2 2 1 2 2 2 2 2 2 2 2 909110 1337400 20898 1416000 1701800 1870900 1341800 1091800 1223900 1048900 1283800 846630 1248300 105950 1445800 1624000 1860400 1376200 1148100 1252400 1026200 1236600 1 1 1 1 1 1 1 1 1 1 1 621030 1066500 0 988340 698140 659680 695140 679540 725250 640970 839300 578200 994910 46847 1008900 668970 692760 706200 688750 740550 627590 806110 1 1 0 1 1 1 1 1 1 1 1 52653000 22909000 29744000 12975 1505 12056 68638;68639;68640 82992;82993;82994 82994 3 LVEVPNDGGPLGIHVVPFSAR Unmodified 2172.1691 0.1691376 2288 Q8TEW0;Q8TEW0-5;Q8TEW0-6;Q8TEW0-11;Q8TEW0-3;Q8TEW0-7;Q8TEW0-4;Q8TEW0-2;Q8TEW0-10;Q8TEW0-9;Q8TEW0-8 PARD3 Partitioning defective 3 homolog yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 73.559 73.402 3 6.1714E-14 23168 20211116_3447_TMUAki_TMT10x_S_F8 126.9 101.58 5752400 9573300 244410 9565600 6989800 5957000 7057400 4081100 3911700 4554400 6847300 5357800 8932900 722030 9705100 6718700 6249100 7057700 4258200 4221300 4428600 6514500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5752400 9573300 244410 9565600 6989800 5957000 7057400 4081100 3911700 4554400 6847300 5357800 8932900 722030 9705100 6718700 6249100 7057700 4258200 4221300 4428600 6514500 2 2 2 2 2 2 2 2 2 2 2 523420000 0 523420000 12976 2288 12057 68641;68642 82995;82996;82997 82997 3 LVEYDIDEVVYDEDSPYQNIK Unmodified 2545.1748 0.17479565 1187 P52788;P52788-2 SMS Spermine synthase yes no 0 0 0 0 By MS/MS 1 0 1 1 78.881 78.881 3 7.3252E-14 25873 20211116_3428_TMUAki_TMT10x_P_F1 124.26 109.65 1962700 3399900 0 3355700 2280600 3861700 2265000 2151900 2167600 2441700 2309900 1827200 3172300 136360 3434000 2184400 3864400 2295200 2282900 2214500 2372800 2223900 1 1 0 1 1 1 1 1 1 1 1 1962700 3399900 0 3355700 2280600 3861700 2265000 2151900 2167600 2441700 2309900 1827200 3172300 136360 3434000 2184400 3864400 2295200 2282900 2214500 2372800 2223900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1113700000 1113700000 0 12977 1187 12058 68643 82998 82998 1 LVFDEYLK Unmodified 1025.5433 0.54334816 548 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 By MS/MS By MS/MS 5.57 0.904 1 2 3 1 4 3 71.326 71.333 2 0.0015467 22245 20211116_3434_TMUAki_TMT10x_P_F6 120.46 77.993 41230000 63954000 156870 62938000 43067000 49150000 48965000 25689000 24199000 26698000 45963000 38390000 59672000 3477300 64072000 41445000 50394000 48592000 27333000 26474000 26033000 43665000 4 4 2 4 4 4 4 4 4 4 4 31649000 48663000 156870 48110000 32501000 40787000 38295000 18545000 17232000 19337000 34971000 29469000 45405000 2720900 49010000 31315000 41503000 37889000 20002000 19082000 18853000 33186000 3 3 2 3 3 3 3 3 3 3 3 9580800 15291000 0 14827000 10566000 8362700 10670000 7143700 6966900 7360900 10992000 8920300 14267000 756420 15062000 10130000 8890700 10703000 7331200 7392500 7180100 10479000 1 1 0 1 1 1 1 1 1 1 1 1571400000 945990000 625420000 12978 548 12059 68644;68645;68646;68647;68648;68649;68650 82999;83000;83001;83002;83003;83004;83005;83006 83002 8 LVFGFLNGR Unmodified 1021.5709 0.57090032 469 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 0 0 By MS/MS By MS/MS 4.57 1.18 2 1 2 2 4 3 75.086 75.079 2 6.2912E-06 24091 20211116_3445_TMUAki_TMT10x_S_F6 173.85 133.16 42490000 69301000 160050 63827000 51619000 64237000 48190000 46622000 42156000 47756000 52122000 39561000 64645000 3468400 65506000 49397000 65019000 48874000 48325000 43504000 46594000 49971000 9 9 3 9 9 9 9 9 9 9 9 22797000 37087000 53215 33183000 24348000 43697000 26172000 25156000 22742000 25618000 27946000 21225000 34592000 1717300 34285000 23379000 43450000 26346000 26526000 23471000 25001000 26798000 5 5 1 5 5 5 5 5 5 5 5 19694000 32214000 106840 30644000 27271000 20540000 22018000 21466000 19414000 22138000 24175000 18337000 30053000 1751100 31222000 26017000 21569000 22528000 21798000 20033000 21593000 23174000 4 4 2 4 4 4 4 4 4 4 4 3400600000 1729900000 1670700000 12979 469 12060 68651;68652;68653;68654;68655;68656;68657 83007;83008;83009;83010;83011;83012;83013;83014;83015;83016;83017 83017 11 LVFLACCVAPTNPR Unmodified 1616.8167 0.81670303 1716 Q14566 MCM6 DNA replication licensing factor MCM6 yes yes 0 0 0 0 By MS/MS By MS/MS 4.57 0.904 1 2 3 1 3 4 68.493 68.448 2;3 8.8618E-19 21035 20211116_3444_TMUAki_TMT10x_S_F5 169.37 133.04 16861000 27858000 143190 27323000 19235000 23390000 18850000 17136000 15857000 17463000 21108000 15699000 25992000 1417800 27853000 18433000 23931000 19048000 17748000 16449000 17042000 20199000 8 8 4 8 8 8 8 8 8 8 8 8005500 12478000 38906 12448000 8778800 15135000 9696200 8464600 7404000 8434200 9872200 7453500 11643000 620090 12741000 8437100 15103000 9716300 8941900 7720200 8238600 9446900 4 4 1 4 4 4 4 4 4 4 4 8855200 15379000 104280 14875000 10456000 8255300 9153600 8671100 8452900 9028800 11236000 8245400 14349000 797680 15112000 9995700 8827700 9331300 8805900 8728800 8803300 10752000 4 4 3 4 4 4 4 4 4 4 4 2711200000 1170200000 1541000000 12980 1716 12061 68658;68659;68660;68661;68662;68663;68664 83018;83019;83020;83021;83022;83023;83024;83025 83023 8 LVFLGEQSVGK Unmodified 1175.655 0.65502388 742;743 P20340;Q9NRW1;P20340-3;P20340-2 RAB6A;RAB6B Ras-related protein Rab-6A;Ras-related protein Rab-6B no no 0 0 0 0 By MS/MS By MS/MS 7.33 0.667 1 4 4 5 4 65.363 65.624 2;3 8.2998E-19 19960 20211116_3447_TMUAki_TMT10x_S_F8 229.17 168.38 33221000 55006000 117050 62991000 45523000 48525000 36732000 39664000 37438000 38560000 44232000 30932000 51357000 2842000 63481000 43423000 50127000 37740000 40742000 38297000 37706000 42459000 6 6 1 6 6 6 6 6 6 6 6 16037000 26188000 0 30427000 26837000 34090000 21156000 18566000 18073000 18254000 21143000 14931000 24452000 1362700 30796000 25582000 34154000 21661000 19651000 18630000 17840000 20301000 3 3 0 3 3 3 3 3 3 3 3 17184000 28818000 117050 32565000 18686000 14434000 15575000 21099000 19365000 20307000 23089000 16000000 26904000 1479300 32686000 17841000 15973000 16079000 21092000 19667000 19865000 22157000 3 3 1 3 3 3 3 3 3 3 3 5187800000 3287700000 1900100000 12981 742;743 12062 68665;68666;68667;68668;68669;68670;68671;68672;68673 83026;83027;83028;83029;83030;83031;83032;83033;83034;83035 83033 10 LVFLGLDNAGK Unmodified 1145.6445 0.64445919 2919 Q9NR31;Q9Y6B6 SAR1A;SAR1B GTP-binding protein SAR1a;GTP-binding protein SAR1b yes no 0 0 0 0 By MS/MS By MS/MS 4.14 3.09 4 4 2 4 7 7 75.223 75.204 2;3 2.8053E-23 24197 20211116_3428_TMUAki_TMT10x_P_F1 244.8 194.67 92481000 147210000 959350 146850000 102020000 131300000 104160000 84750000 80558000 85241000 107740000 86115000 137360000 8521300 149600000 97918000 133670000 104810000 88532000 83951000 83231000 103090000 17 17 13 17 17 17 17 17 17 17 17 53554000 83708000 741600 83542000 57686000 92226000 62417000 49385000 46261000 49656000 61057000 49870000 78108000 5187400 85368000 55476000 92456000 62565000 52382000 48295000 48485000 58442000 9 9 8 9 9 9 9 9 9 9 9 38927000 63505000 217760 63305000 44330000 39069000 41740000 35365000 34296000 35586000 46681000 36245000 59256000 3333900 64233000 42442000 41213000 42244000 36150000 35656000 34746000 44648000 8 8 5 8 8 8 8 8 8 8 8 14380000000 8566900000 5813400000 12982 2919 12063 68674;68675;68676;68677;68678;68679;68680;68681;68682;68683;68684;68685;68686;68687 83036;83037;83038;83039;83040;83041;83042;83043;83044;83045;83046;83047;83048;83049;83050;83051;83052;83053 83037 18 LVFPQDLLEK Unmodified 1200.6754 0.67542497 2273 Q8TCT9;Q8TCT9-5;Q8TCT9-2;Q8TCT9-4 HM13 Minor histocompatibility antigen H13 yes no 0 0 0 0 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 78.067 78.076 2 1.8159E-08 27007 20211116_3435_TMUAki_TMT10x_P_F7 170.99 107.52 47363000 76779000 216200 79099000 54652000 58480000 57354000 36101000 34203000 39281000 54144000 44100000 71651000 4050500 80222000 52472000 60345000 57318000 37929000 36517000 38232000 51614000 6 6 2 6 6 6 6 6 6 6 6 18226000 28161000 0 28026000 16677000 26735000 18731000 12701000 12283000 14047000 20159000 16969000 26277000 1360800 28581000 16034000 27000000 18692000 13663000 13057000 13664000 19203000 2 2 0 2 2 2 2 2 2 2 2 29137000 48618000 216200 51073000 37975000 31746000 38623000 23399000 21921000 25234000 33986000 27131000 45375000 2689700 51641000 36439000 33345000 38626000 24267000 23460000 24569000 32411000 4 4 2 4 4 4 4 4 4 4 4 5105100000 1899600000 3205500000 12983 2273 12064 68688;68689;68690;68691;68692;68693 83054;83055;83056;83057;83058;83059 83055 6 LVFSNVNLK Unmodified 1032.5968 0.59678072 1847 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 63.905 63.613 2 5.9436E-06 22702 20211116_3441_TMUAki_TMT10x_S_F3 160.69 98.225 26126000 42083000 266370 47075000 46472000 56491000 35430000 28742000 27857000 26757000 33871000 24327000 39287000 2648300 47813000 44295000 56345000 36281000 30563000 28885000 26214000 32488000 5 5 3 5 5 5 5 5 5 5 5 26126000 42083000 266370 47075000 46472000 56491000 35430000 28742000 27857000 26757000 33871000 24327000 39287000 2648300 47813000 44295000 56345000 36281000 30563000 28885000 26214000 32488000 5 5 3 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1041800000 1041800000 0 12984 1847 12065 68694;68695;68696 83060;83061;83062;83063;83064;83065 83065 6 LVGDVDFEGVR Unmodified 1204.6088 0.60880197 664 P13995;P13995-2 MTHFD2 Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase yes no 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 60.326 60.241 2 2.2278E-21 21322 20211116_3441_TMUAki_TMT10x_S_F3 204.86 171.6 15289000 25107000 58805 24680000 20993000 25595000 17768000 16755000 15431000 15670000 19857000 14236000 23426000 1357200 25221000 20049000 25819000 18119000 17449000 15958000 15349000 19019000 3 3 1 3 3 3 3 3 3 3 3 9876200 16104000 58805 16250000 15516000 20870000 12806000 11213000 10490000 10397000 12896000 9196000 15027000 925260 16637000 14811000 20759000 13060000 11864000 10859000 10188000 12366000 2 2 1 2 2 2 2 2 2 2 2 5412700 9003700 0 8429500 5477800 4724200 4961700 5541200 4940800 5273500 6961200 5039600 8399300 431930 8584700 5238300 5059600 5059200 5584700 5099000 5161400 6652700 1 1 0 1 1 1 1 1 1 1 1 1532300000 1082600000 449710000 12985 664 12066 68697;68698;68699;68700;68701 83066;83067;83068;83069;83070 83069 5 LVGIISSR Unmodified 843.5178 0.51780212 640 P12268 IMPDH2 Inosine-5'-monophosphate dehydrogenase 2 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 50.346 50.164 2 0.00041627 16171 20211116_3439_TMUAki_TMT10x_S_F1 143.11 31.459 13724000 21315000 38797 22170000 18860000 19360000 14593000 15444000 15375000 15227000 17666000 12778000 19892000 1154200 22515000 17973000 19808000 15050000 15894000 15688000 14880000 16971000 5 5 2 5 5 5 5 5 5 5 5 6539900 9881600 26793 10027000 11412000 12798000 7278000 7076000 7154800 7278200 8332200 6089000 9221100 571790 10260000 10836000 12738000 7594700 7489200 7325900 7099900 8001300 2 2 1 2 2 2 2 2 2 2 2 7183600 11433000 12004 12144000 7448200 6562000 7315100 8368200 8219900 7948800 9333900 6688500 10671000 582440 12255000 7137200 7069800 7455000 8404500 8362200 7780500 8969600 3 3 1 3 3 3 3 3 3 3 3 2090600000 1218300000 872320000 12986 640 12067 68702;68703;68704;68705;68706;68707 83071;83072;83073;83074;83075 83073 5 LVGLTGTREEVDQVAR Unmodified 1741.9323 0.93226137 365 O75880 SCO1 Protein SCO1 homolog, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 46.915 46.908 3 6.6628E-06 13127 20211116_3431_TMUAki_TMT10x_P_F4 99.915 69.856 8797200 16264000 209510 16772000 15441000 16177000 10211000 15150000 15386000 13322000 15526000 8191800 15178000 917550 17066000 14680000 16494000 10791000 15401000 15431000 13086000 14973000 3 3 2 3 3 3 3 3 3 3 3 3619800 6657200 142210 6986100 10150000 11534000 6605400 6811800 6497700 5916800 7103400 3371400 6213100 524100 7171800 9651800 11363000 6882100 7137200 6636500 5815500 6833700 1 1 1 1 1 1 1 1 1 1 1 5177400 9607100 67301 9786000 5290600 4643400 3605600 8338200 8888000 7405000 8422400 4820400 8965100 393450 9893800 5028100 5130600 3909000 8263300 8794300 7270500 8139200 2 2 1 2 2 2 2 2 2 2 2 1082100000 672280000 409800000 12987 365 12068 68708;68709;68710;68711;68712;68713 83076;83077;83078;83079 83076 4 LVGMPAK Oxidation (M) 730.40475 0.40474619 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 1 0 By MS/MS 6.5 0.5 2 2 4 33.855 34.048 2 0.019894 8796 20211116_3435_TMUAki_TMT10x_P_F7 94.669 58.082 730920 1238900 7957.8 1119100 1401700 1493700 1026500 587770 859460 698970 935790 680570 1155600 70684 1155700 1334600 1478200 1055700 646660 884370 678070 900360 5 5 2 5 5 5 5 5 5 5 5 730920 1238900 7957.8 1119100 1401700 1493700 1026500 587770 859460 698970 935790 680570 1155600 70684 1155700 1334600 1478200 1055700 646660 884370 678070 900360 5 5 2 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 88265000 88265000 0 12988 972 12069 68714;68715;68716;68717 83080;83081;83082;83083;83084 83083 1237 5 LVGMPAK Unmodified 714.40983 0.40983157 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 46.858 46.879 2 0.0051535 12860 20211116_3436_TMUAki_TMT10x_P_F8 109.88 48.875 6505800 11139000 35536 11545000 10694000 8468400 8097700 5060600 4693200 5182200 8062900 6057800 10395000 631150 11703000 10190000 8740200 8244200 5320900 5043100 5056200 7673700 2 2 2 2 2 2 2 2 2 2 2 3817700 6156000 18489 6520000 7898900 6698900 5808500 2588500 2453900 2709000 4564400 3554800 5745600 390910 6628500 7522400 6721000 5897300 2842800 2718100 2640800 4337800 1 1 1 1 1 1 1 1 1 1 1 2688100 4982700 17047 5024500 2794700 1769500 2289200 2472100 2239300 2473200 3498600 2503000 4649500 240240 5074200 2668000 2019200 2346900 2478100 2325000 2415400 3336000 1 1 1 1 1 1 1 1 1 1 1 184920000 128290000 56633000 12989 972 12069 68718;68719;68720 83085;83086;83087 83085 3 LVGPEEALSPGEAR Unmodified 1423.7307 0.73070802 277 O60568 PLOD3 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 50.567 50.335 2 1.3362E-18 17251 20211116_3441_TMUAki_TMT10x_S_F3 164.04 139.19 1953700 3559600 29891 3805800 3158300 3750100 2386100 3232300 3172700 2634300 3140500 1819300 3322400 206700 3864300 3010700 3812100 2485000 3294600 3192100 2597500 3030600 2 2 2 2 2 2 2 2 2 2 2 1047300 1977700 11110 2075300 2357300 2978700 1712400 1721900 1823000 1490900 1774000 975260 1845700 115530 2123800 2244700 2950500 1774100 1807300 1848000 1465700 1712800 1 1 1 1 1 1 1 1 1 1 1 906330 1581900 18781 1730500 800970 771390 673660 1510400 1349700 1143400 1366600 844030 1476600 91169 1740600 765940 861610 710910 1487400 1344100 1131800 1317700 1 1 1 1 1 1 1 1 1 1 1 314020000 216190000 97830000 12990 277 12070 68721;68722 83088;83089 83089 2 LVGPEGFVVTEAGFGADIGMEK Oxidation (M) 2238.0878 0.087835314 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 1 0 By MS/MS By MS/MS 4.33 1.25 2 2 2 3 3 78.859 78.823 3 2.6117E-07 28757 20211116_3441_TMUAki_TMT10x_S_F3 84.166 68.911 15088000 24997000 311640 23451000 17915000 23101000 19514000 18064000 18240000 18587000 20121000 14050000 23319000 1462700 24028000 17229000 23442000 19671000 18636000 18678000 18132000 19352000 7 7 3 7 7 7 7 7 7 7 7 6599900 10999000 113510 10569000 6288900 13110000 8073300 7909700 8426000 8281800 9170600 6145200 10261000 553940 10851000 6075700 13082000 8106700 8315600 8583000 8073100 8823500 3 3 1 3 3 3 3 3 3 3 3 8487900 13998000 198140 12882000 11626000 9991000 11441000 10154000 9813700 10305000 10951000 7904300 13058000 908740 13178000 11153000 10360000 11564000 10320000 10095000 10058000 10528000 4 4 2 4 4 4 4 4 4 4 4 5957300000 3435600000 2521700000 12991 629 12071 68723;68724;68725;68726;68727;68728 83090;83091;83092;83093;83094;83095;83096 83093 653 7 LVGPEVR Unmodified 768.44939 0.4493882 1498 Q02809;Q02809-2 PLOD1 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 yes no 0 0 0 0 By MS/MS 4 0 1 1 33.846 33.918 2 0.031814 8445 20211116_3442_TMUAki_TMT10x_S_F4 78.994 44.277 266390 469070 277.65 478250 296510 270090 348950 295970 281120 281390 395250 248010 437730 19169 484130 285410 288570 349120 299180 293010 275420 377750 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 266390 469070 277.65 478250 296510 270090 348950 295970 281120 281390 395250 248010 437730 19169 484130 285410 288570 349120 299180 293010 275420 377750 2 2 1 2 2 2 2 2 2 2 2 8534500 0 8534500 12992 1498 12072 68729 83097;83098 83098 2 LVGQGASAVLLDLPNSGGEAQAK Unmodified 2194.1594 0.15936077 2598 Q99714;Q99714-2 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 0 0 0 0 By MS/MS By MS/MS 6.25 0.661 1 4 3 3 5 73.339 73.387 3;4 8.5635E-46 23405 20211116_3445_TMUAki_TMT10x_S_F6 199.7 181.56 105520000 188420000 549900 184110000 126510000 149320000 117690000 116340000 113680000 115230000 136020000 98239000 175800000 7738200 187600000 121030000 153520000 119710000 119910000 116620000 112590000 130520000 15 15 8 15 15 15 15 15 15 15 15 43762000 75243000 195740 71656000 49393000 84688000 52967000 47543000 48063000 47277000 53284000 40745000 70196000 3500000 73549000 47436000 84636000 53388000 50206000 49295000 46184000 51239000 6 6 4 6 6 6 6 6 6 6 6 61754000 113180000 354160 112450000 77118000 64630000 64721000 68792000 65620000 67956000 82733000 57494000 105610000 4238300 114050000 73589000 68884000 66325000 69708000 67325000 66404000 79279000 9 9 4 9 9 9 9 9 9 9 9 19559000000 7994800000 11564000000 12993 2598 12073 68730;68731;68732;68733;68734;68735;68736;68737 83099;83100;83101;83102;83103;83104;83105;83106;83107;83108;83109;83110;83111;83112;83113 83108 15 LVGQGASAVLLDLPNSGGEAQAKK Unmodified 2322.2543 0.25432379 2598 Q99714;Q99714-2 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 0 0 0 1 By MS/MS 8 0 1 1 65.241 65.187 4 2.1303E-22 19781 20211116_3447_TMUAki_TMT10x_S_F8 146.06 132.63 3199100 6412500 0 5293400 4383400 4260500 3459700 4875800 4058400 4512300 4485800 2978300 5979400 234870 5463800 4176800 4417900 3576200 4915500 4117700 4422000 4314000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3199100 6412500 0 5293400 4383400 4260500 3459700 4875800 4058400 4512300 4485800 2978300 5979400 234870 5463800 4176800 4417900 3576200 4915500 4117700 4422000 4314000 1 1 0 1 1 1 1 1 1 1 1 532600000 0 532600000 12994 2598 12074 68738 83114 83114 1 LVGSQEELASWGHEYVR Unmodified 1958.9486 0.94863972 1609 Q13200;Q13200-3 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 59.443 59.573 3 3.8058E-05 18522 20211116_3433_TMUAki_TMT10x_P_F5 83.758 56.109 3489200 6320900 0 5546200 4000500 8469000 4972900 6120100 6368800 5483000 4896700 3248600 5895200 270340 5756400 3858600 8394600 5036600 6322000 6365900 5381200 4769200 1 1 0 1 1 1 1 1 1 1 1 3489200 6320900 0 5546200 4000500 8469000 4972900 6120100 6368800 5483000 4896700 3248600 5895200 270340 5756400 3858600 8394600 5036600 6322000 6365900 5381200 4769200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 534490000 534490000 0 12995 1609 12075 68739;68740 83115;83116 83116 2 LVGSVNLFSDENVPR Unmodified 1644.8471 0.84713476 2629 Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 0 0 0 0 By MS/MS 5.33 0.471 2 1 3 69.776 69.812 2;3 0.00020475 21603 20211116_3434_TMUAki_TMT10x_P_F6 75.316 34.739 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12996 2629 12076 68741;68742;68743 83117;83118;83119 83119 3 LVHANFGTK Unmodified 985.53451 0.53451481 480 P02786 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 37.467 37.533 3 0.00011095 11112 20211116_3439_TMUAki_TMT10x_S_F1 129.83 100.52 1716800 2960100 16014 3120100 2803900 2795700 2148600 1814500 1742700 1611600 2286100 1598600 2762700 172480 3166800 2673000 2846000 2201100 1888300 1809900 1582300 2188500 3 3 3 3 3 3 3 3 3 3 3 1053700 1733200 6094.7 1933200 2138800 2218700 1424200 1117400 1051500 989180 1398000 981180 1618000 108240 1962400 2033200 2217900 1470400 1187800 1098300 971370 1337800 2 2 2 2 2 2 2 2 2 2 2 663030 1227000 9919.2 1186800 665040 576960 724460 697050 691210 622380 888090 617420 1144700 64242 1204500 639770 628080 730710 700420 711630 610920 850610 1 1 1 1 1 1 1 1 1 1 1 129180000 87957000 41225000 12997 480 12077 68744;68745;68746 83120;83121;83122 83122 3 LVHGDIFRPPR Unmodified 1305.7306 0.73058886 2606 Q99805 TM9SF2 Transmembrane 9 superfamily member 2 yes yes 0 0 0 1 By MS/MS By matching 2 0 2 1 1 39.35 39.263 4 4.2265E-06 11279 20211116_3429_TMUAki_TMT10x_P_F2 119.53 93.792 238780 346280 8411.1 407100 487470 523380 346470 305800 330380 271950 319000 222390 323340 31119 412750 464370 521120 358310 320880 336400 266990 308080 1 1 1 1 1 1 1 1 1 1 1 238780 346280 8411.1 407100 487470 523380 346470 305800 330380 271950 319000 222390 323340 31119 412750 464370 521120 358310 320880 336400 266990 308080 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 209530000 177620000 31906000 12998 2606 12078 68747;68748 83123 83123 1 LVHPGVAEVVFVK Unmodified 1392.8129 0.8129215 2725 Q9BY77;Q9BY77-2 POLDIP3 Polymerase delta-interacting protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 5.75 2.77 1 2 1 3 1 58.044 58.566 3 4.2809E-13 17556 20211116_3428_TMUAki_TMT10x_P_F1 140.14 114.92 3432300 5817400 0 5549400 3680900 3329200 3158500 4477700 4629100 4126000 4596600 3195300 5427200 227830 5647000 3512300 3554300 3276600 4484100 4643900 4044100 4435200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3432300 5817400 0 5549400 3680900 3329200 3158500 4477700 4629100 4126000 4596600 3195300 5427200 227830 5647000 3512300 3554300 3276600 4484100 4643900 4044100 4435200 1 1 0 1 1 1 1 1 1 1 1 444160000 0 444160000 12999 2725 12079 68749;68750;68751;68752 83124;83125;83126;83127 83124 4 LVHPGVAEVVFVKK Unmodified 1520.9079 0.90788452 2725 Q9BY77;Q9BY77-2 POLDIP3 Polymerase delta-interacting protein 3 yes no 0 0 0 1 By MS/MS 3 0 1 1 54.156 53.981 4 0.00010338 17704 20211116_3430_TMUAki_TMT10x_P_F3 89.231 78.018 1622800 2550400 24369 2970700 3445400 3588300 2472000 1740400 1512400 1593200 2124300 1511100 2381300 182780 3010100 3280600 3575900 2528600 1858300 1602300 1562100 2030300 1 1 1 1 1 1 1 1 1 1 1 1622800 2550400 24369 2970700 3445400 3588300 2472000 1740400 1512400 1593200 2124300 1511100 2381300 182780 3010100 3280600 3575900 2528600 1858300 1602300 1562100 2030300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 149760000 149760000 0 13000 2725 12080 68753 83128 83128 1 LVHSLFESIMSTQESSNPNNVLK Oxidation (M) 2589.2745 0.27446689 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 1 0 By MS/MS 8 0 1 1 74.996 75.017 4 0.0027009 24346 20211116_3436_TMUAki_TMT10x_P_F8 55.763 40.341 5258100 8935700 144010 7956300 5306400 11153000 6012600 6810800 6956900 6642900 6621800 4896900 8334300 570820 8233700 5114500 11067000 6091100 7138900 7024300 6494700 6398200 2 2 2 2 2 2 2 2 2 2 2 5258100 8935700 144010 7956300 5306400 11153000 6012600 6810800 6956900 6642900 6621800 4896900 8334300 570820 8233700 5114500 11067000 6091100 7138900 7024300 6494700 6398200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 304330000 304330000 0 13001 157 12081 68754 83129;83130 83130 124 2 LVIASTLYEDGTLDDGEYNPTDDRPSR Unmodified 3011.3996 0.39960364 1176 P52434;P52434-3;P52434-4 POLR2H DNA-directed RNA polymerases I, II, and III subunit RPABC3 yes no 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 71.128 70.999 3 5.4097E-20 24179 20211116_3429_TMUAki_TMT10x_P_F2 128.38 124.81 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13002 1176 12082 68755;68756 83131;83132 83132 2 LVICPDEGFYK Unmodified 1339.6482 0.64822394 1292 P61081 UBE2M NEDD8-conjugating enzyme Ubc12 yes yes 0 0 0 0 By MS/MS By MS/MS 5.56 1.07 2 2 3 2 5 4 67.269 67.403 2;3 2.376E-27 20645 20211116_3444_TMUAki_TMT10x_S_F5 226.76 199.79 32605000 53169000 135990 52963000 43623000 62929000 40870000 38449000 36950000 38320000 41386000 30359000 49612000 2819300 54195000 41756000 62943000 41479000 40324000 37919000 37430000 39786000 7 7 3 7 7 7 7 7 7 7 7 26315000 42255000 135990 42100000 36190000 56606000 34682000 30246000 29474000 30894000 32754000 24502000 39428000 2401800 43177000 34668000 56180000 35097000 32102000 30329000 30146000 31495000 6 6 3 6 6 6 6 6 6 6 6 6290700 10914000 0 10863000 7433600 6322700 6187500 8203000 7475200 7426100 8631600 5856300 10184000 417470 11018000 7088500 6763500 6381200 8222100 7589400 7284700 8290800 1 1 0 1 1 1 1 1 1 1 1 5094300000 3630600000 1463700000 13003 1292 12083 68757;68758;68759;68760;68761;68762;68763;68764;68765 83133;83134;83135;83136;83137;83138;83139;83140;83141;83142;83143 83141 11 LVIDSNR Unmodified 815.45012 0.45011648 3399 yes no 0 0 0 0 By MS/MS By MS/MS 3.83 0.687 2 3 1 4 2 36.436 36.493 2 0.003607 9981 20211116_3430_TMUAki_TMT10x_P_F3 117.6 43.176 + 8666300 12294000 73328 12259000 11836000 13034000 9366500 7456400 7095900 6575000 11346000 8069700 11471000 824010 12521000 11291000 13105000 9559700 7836300 7469000 6457800 10813000 7 7 6 7 7 7 7 7 7 7 7 7493200 10471000 61604 10481000 10696000 12075000 8054500 6372800 5992600 5567200 9918000 6977400 9770300 723510 10715000 10193000 12074000 8244300 6743000 6326000 5470400 9446000 5 5 5 5 5 5 5 5 5 5 5 1173100 1823200 11724 1778700 1139900 959410 1312000 1083700 1103200 1007800 1427900 1092300 1701000 100500 1805500 1097600 1030700 1315300 1093300 1143000 987370 1367300 2 2 1 2 2 2 2 2 2 2 2 227810000 163420000 64394000 13004 3399 12084 68766;68767;68768;68769;68770;68771 83144;83145;83146 83144 3 LVIDVIR Unmodified 826.52764 0.52763852 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 0 By MS/MS By MS/MS 6.2 0.748 1 2 2 2 3 59.498 59.782 2 0.0047835 17817 20211116_3445_TMUAki_TMT10x_S_F6 111.73 18.905 21619000 34077000 0 35079000 27149000 29653000 22266000 25462000 24098000 23821000 26212000 20127000 31801000 1570900 35634000 25889000 30449000 22898000 26050000 24511000 23333000 25220000 5 5 0 5 5 5 5 5 5 5 5 9310100 14555000 0 14390000 13446000 18567000 10414000 10670000 10216000 9978500 10995000 8667500 13581000 685700 14754000 12807000 18479000 10716000 11227000 10430000 9774100 10582000 2 2 0 2 2 2 2 2 2 2 2 12309000 19522000 0 20689000 13703000 11086000 11852000 14791000 13882000 13843000 15217000 11459000 18221000 885230 20880000 13083000 11969000 12182000 14823000 14081000 13559000 14638000 3 3 0 3 3 3 3 3 3 3 3 2510200000 962740000 1547500000 13005 1723 12085 68772;68773;68774;68775;68776 83147;83148;83149;83150;83151 83150 5 LVIEEAER Unmodified 957.51311 0.51311067 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 42.568 42.451 2 0.00041051 14052 20211116_3441_TMUAki_TMT10x_S_F3 141.52 28.019 23614000 33795000 222040 41015000 32927000 28379000 24246000 21733000 21621000 20782000 27977000 21986000 31561000 1979300 41143000 31347000 29541000 24966000 22404000 22336000 20336000 26792000 8 8 4 8 8 8 8 8 8 8 8 11572000 15153000 52826 19385000 21266000 18468000 11336000 9671200 10074000 9663400 13141000 10773000 14155000 898250 19463000 20128000 18673000 11979000 10277000 10412000 9438100 12582000 4 4 2 4 4 4 4 4 4 4 4 12042000 18642000 169220 21630000 11661000 9910500 12910000 12062000 11547000 11119000 14836000 11213000 17406000 1081000 21680000 11218000 10867000 12988000 12127000 11923000 10898000 14210000 4 4 2 4 4 4 4 4 4 4 4 2773000000 1738300000 1034600000 13006 1147 12086 68777;68778;68779;68780;68781;68782 83152;83153;83154;83155;83156;83157;83158;83159 83159 8 LVIEFSEEYPNKPPTVR Unmodified 2017.052 0.052042156 1396 P63146 UBE2B Ubiquitin-conjugating enzyme E2 B yes yes 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 62.915 62.893 3 8.3523E-11 19155 20211116_3445_TMUAki_TMT10x_S_F6 126.63 102.88 3566600 5746000 0 6347800 4307100 3552600 3936200 3805100 3816100 4210600 4740900 3320200 5363900 228420 6391500 4115500 3797300 4008300 3868200 3920300 4095600 4544800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3566600 5746000 0 6347800 4307100 3552600 3936200 3805100 3816100 4210600 4740900 3320200 5363900 228420 6391500 4115500 3797300 4008300 3868200 3920300 4095600 4544800 1 1 0 1 1 1 1 1 1 1 1 518600000 0 518600000 13007 1396 12087 68783;68784 83160;83161 83160 2 LVIGDHK Unmodified 780.44939 0.4493882 69 O00193 SMAP Small acidic protein yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 35.713 35.781 3 0.00051862 7740 20211116_3444_TMUAki_TMT10x_S_F5 145.04 92.362 2500700 4068800 49027 3841800 3273600 3891800 3204900 2371300 2800800 2367100 3115700 2328800 3795800 263840 3936000 3140100 3927500 3242000 2487600 2878200 2312100 2995800 2 2 2 2 2 2 2 2 2 2 2 1657400 2690100 31879 2540800 2276900 3122400 2102200 1557800 1897100 1569600 2024600 1543400 2509600 175790 2611200 2180700 3109800 2135100 1663200 1943400 1532500 1949100 1 1 1 1 1 1 1 1 1 1 1 843370 1378700 17148 1301000 996710 769450 1102800 813570 903750 797550 1091100 785390 1286200 88050 1324800 959400 817650 1106900 824480 934760 779580 1046700 1 1 1 1 1 1 1 1 1 1 1 335000000 210860000 124140000 13008 69 12088 68785;68786;68787 83162;83163;83164 83164 3 LVIIEGDLER Unmodified 1155.6499 0.6499385 526;527;525 P06753-2;P06753-3;P06753-5;P06753-4;P06753-7;P06753-6;P06753 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 0 By MS/MS By MS/MS 2.17 1.07 2 2 1 1 3 3 64.125 63.878 2 4.6089E-09 19696 20211116_3428_TMUAki_TMT10x_P_F1 153.24 122.56 9178800 14688000 99794 15320000 10305000 17077000 10807000 9104900 8574900 8386300 10918000 8547100 13708000 862740 15611000 9899400 17109000 10867000 9638100 8904300 8220100 10460000 2 2 1 2 2 2 2 2 2 2 2 9178800 14688000 99794 15320000 10305000 17077000 10807000 9104900 8574900 8386300 10918000 8547100 13708000 862740 15611000 9899400 17109000 10867000 9638100 8904300 8220100 10460000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1419800000 1102000000 317800000 13009 526;527;525 12089 68788;68789;68790;68791;68792;68793 83165;83166;83167;83168;83169 83165 5 LVIIEGDLERTEER Unmodified 1670.8839 0.88391419 526;527;525 P06753-2;P06753-3;P06753-5;P06753-4;P06753-7;P06753-6;P06753 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 1 By MS/MS By MS/MS 2.17 1.07 2 2 1 1 3 3 59.354 59.172 3 3.5895E-24 18065 20211116_3440_TMUAki_TMT10x_S_F2 177.63 59.394 23447000 35304000 122140 42516000 27692000 36834000 25264000 20354000 20375000 20002000 26895000 21831000 32969000 1927300 42779000 26486000 37504000 25602000 21515000 21174000 19549000 25743000 6 6 4 6 6 6 6 6 6 6 6 19489000 29541000 122140 35488000 24517000 34394000 22001000 17421000 17381000 16811000 22539000 18146000 27588000 1628700 35767000 23441000 34724000 22305000 18551000 18067000 16444000 21583000 5 5 4 5 5 5 5 5 5 5 5 3958100 5762400 0 7028400 3175100 2440100 3263500 2932800 2994400 3190700 4355800 3685200 5381600 298610 7012100 3045500 2779900 3297300 2964800 3106400 3105600 4159700 1 1 0 1 1 1 1 1 1 1 1 3068700000 2238800000 829870000 13010 526;527;525 12090 68794;68795;68796;68797;68798;68799 83170;83171;83172;83173;83174;83175;83176 83176 7 LVIIEGDLERTEERAELAESR Unmodified 2427.2605 0.26053138 526;527 P06753-2;P06753-3;P06753-6 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 2 By MS/MS By MS/MS 1 0 3 2 1 66.484 66.409 3;4 1.0335E-101 22731 20211116_3439_TMUAki_TMT10x_S_F1 317.28 278.5 14403000 22757000 14935 24803000 13637000 19642000 14576000 11075000 11680000 11089000 15923000 13411000 21243000 1143000 25082000 13097000 20135000 14647000 11693000 12160000 10829000 15229000 4 4 2 4 4 4 4 4 4 4 4 11733000 18564000 3383.9 20412000 10528000 17505000 11908000 9158700 9772500 9213000 13049000 10924000 17329000 904670 20650000 10126000 17825000 11940000 9734800 10152000 8995700 12487000 3 3 1 3 3 3 3 3 3 3 3 2670100 4192900 11551 4391200 3109300 2136800 2668500 1916300 1907700 1875700 2873700 2486200 3913200 238290 4432000 2971000 2310900 2706300 1958300 2008300 1833600 2742200 1 1 1 1 1 1 1 1 1 1 1 6075800000 2907900000 3167900000 13011 526;527 12091 68800;68801;68802 83177;83178;83179;83180 83180 4 LVIIESDLERAEER Unmodified 1670.8839 0.88391419 578;579 P09493-4;P09493;P09493-6;P09493-5 TPM1 Tropomyosin alpha-1 chain no no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 65.217 65.098 3 2.3255E-19 22267 20211116_3439_TMUAki_TMT10x_S_F1 174.68 77.409 7260800 11903000 0 13109000 7606900 9560500 7992800 6333900 6422600 6765300 8259000 6760000 11111000 533500 13235000 7298800 9886000 8038600 6615700 6667800 6589600 7910300 2 2 0 2 2 2 2 2 2 2 2 3765600 5770300 0 6879800 4468100 6311600 4387600 3187000 3408200 3436500 4181400 3506000 5388400 300200 6931700 4280800 6394700 4424500 3405500 3537500 3346000 4009700 1 1 0 1 1 1 1 1 1 1 1 3495200 6132400 0 6229400 3138800 3248900 3605100 3146900 3014400 3328800 4077600 3254000 5722500 233310 6303600 3018000 3491300 3614200 3210100 3130200 3243600 3900600 1 1 0 1 1 1 1 1 1 1 1 1274500000 674820000 599700000 13012 578;579 12092 68803;68804;68805 83181;83182;83183 83183 3 LVIITAGAR Unmodified 912.57565 0.57565135 462 P00338;P00338-3;P00338-2;P00338-5 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 0 By MS/MS By MS/MS 4.31 2.27 2 1 2 2 3 1 2 7 6 51.124 51.151 2 6.1558E-06 17556 20211116_3441_TMUAki_TMT10x_S_F3 164.53 75.405 73284000 122710000 148680 123820000 122760000 128160000 78832000 97455000 98794000 83020000 96492000 68230000 114510000 6254400 126310000 116570000 129600000 82877000 100200000 99550000 81677000 93153000 11 11 3 11 11 11 11 11 11 11 11 45119000 72073000 136090 74401000 95370000 105340000 56227000 61558000 63563000 51546000 59274000 42008000 67261000 4134300 76199000 90441000 104420000 59307000 64498000 64191000 50755000 57312000 7 7 2 7 7 7 7 7 7 7 7 28165000 50638000 12597 49423000 27388000 22818000 22605000 35897000 35231000 31474000 37218000 26223000 47246000 2120000 50107000 26127000 25180000 23570000 35705000 35359000 30921000 35841000 4 4 1 4 4 4 4 4 4 4 4 9073900000 6194600000 2879300000 13013 462 12093 68806;68807;68808;68809;68810;68811;68812;68813;68814;68815;68816;68817;68818 83184;83185;83186;83187;83188;83189;83190;83191;83192;83193;83194;83195 83192 12 LVILANNCPALR Unmodified 1352.7598 0.75984008 1378 P62888 RPL30 60S ribosomal protein L30 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 1.18 1 2 3 4 2 6 6 61.613 61.467 2;3 3.007E-60 20794 20211116_3430_TMUAki_TMT10x_P_F3 328.71 276.45 139790000 213240000 940980 234670000 159970000 183950000 135870000 130030000 121110000 131090000 160840000 130160000 199050000 11789000 237130000 152770000 189310000 138620000 134960000 125260000 127990000 153930000 17 17 9 17 17 17 17 17 17 17 17 76639000 110000000 56477 119680000 92657000 134270000 81773000 66668000 61798000 68508000 82394000 71352000 102680000 5760200 121630000 88517000 134370000 82897000 71251000 64474000 66832000 78845000 8 8 2 8 8 8 8 8 8 8 8 63152000 103240000 884510 114990000 67312000 49678000 54100000 63359000 59310000 62585000 78448000 58807000 96374000 6028500 115500000 64258000 54945000 55728000 63706000 60789000 61155000 75084000 9 9 7 9 9 9 9 9 9 9 9 20052000000 11766000000 8286100000 13014 1378 12094 68819;68820;68821;68822;68823;68824;68825;68826;68827;68828;68829;68830 83196;83197;83198;83199;83200;83201;83202;83203;83204;83205;83206;83207;83208;83209;83210;83211;83212;83213 83200 18 LVILEGELERAEER Unmodified 1654.889 0.88899957 1413 P67936;P67936-2 TPM4 Tropomyosin alpha-4 chain yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 68.077 67.898 3 2.3054E-37 21233 20211116_3428_TMUAki_TMT10x_P_F1 244.36 207.18 + 14563000 25093000 187490 24070000 16110000 22414000 17576000 15061000 15304000 15823000 19140000 13561000 23410000 1389200 24603000 15494000 22770000 17681000 15707000 15804000 15422000 18345000 5 5 3 5 5 5 5 5 5 5 5 6933600 11809000 9787.3 10995000 7620200 13666000 8707300 7238200 7372800 7485400 8664000 6456000 11016000 592430 11314000 7334400 13612000 8734000 7691100 7604800 7300400 8317900 2 2 1 2 2 2 2 2 2 2 2 7629800 13283000 177710 13075000 8489500 8747900 8868300 7823000 7930900 8338000 10476000 7105300 12394000 796790 13289000 8159500 9157900 8946700 8016000 8199600 8122100 10027000 3 3 2 3 3 3 3 3 3 3 3 2776600000 1669100000 1107500000 13015 1413 12095 68831;68832;68833;68834 83214;83215;83216;83217;83218 83214 5 LVINGNPITIFQER Unmodified 1612.8937 0.89369102 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS 3.04 1.91 4 7 9 2 1 2 10 15 59.101 59.055 2;3 3.2428E-72 25217 20211116_3428_TMUAki_TMT10x_P_F1 331.73 294.03 117070000 188070000 144730 178850000 98000000 175190000 129090000 113720000 121280000 123190000 133780000 108990000 175460000 7218700 183050000 94632000 177320000 129080000 119010000 124170000 119920000 128660000 28 28 13 28 28 28 28 28 28 28 28 67262000 101170000 6593.7 94592000 55930000 120850000 63620000 70192000 74350000 72588000 71981000 62618000 94379000 4234800 97356000 53745000 120360000 64462000 73995000 75085000 70795000 69511000 8 8 2 8 8 8 8 8 8 8 8 49808000 86901000 138140 84258000 42070000 54338000 65473000 43528000 46932000 50600000 61797000 46371000 81078000 2983900 85696000 40887000 56959000 64614000 45013000 49084000 49127000 59153000 20 20 11 20 20 20 20 20 20 20 20 24846000000 15476000000 9369900000 13016 489 12096 68835;68836;68837;68838;68839;68840;68841;68842;68843;68844;68845;68846;68847;68848;68849;68850;68851;68852;68853;68854;68855;68856;68857;68858;68859 83219;83220;83221;83222;83223;83224;83225;83226;83227;83228;83229;83230;83231;83232;83233;83234;83235;83236;83237;83238;83239;83240;83241;83242;83243;83244;83245;83246;83247;83248 83219 30 LVINGNPITIFQERDPSK Unmodified 2040.1004 0.10038933 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 1 By MS/MS By MS/MS 5 2.91 8 5 2 4 5 11 15 20 72.621 72.609 2;3;4 4.2314E-115 22485 20211116_3436_TMUAki_TMT10x_P_F8 357.57 318.94 572850000 925320000 7001600 1047700000 537730000 695300000 614600000 407820000 425420000 472180000 619140000 533420000 863880000 52138000 1055000000 517870000 723610000 613540000 431080000 447940000 458500000 591260000 61 61 37 61 61 61 61 61 61 61 61 273890000 430120000 2916700 485200000 261380000 432710000 280800000 201910000 210070000 226860000 291150000 255040000 401550000 24511000 490310000 251240000 438870000 281620000 217680000 219690000 220540000 278360000 27 27 14 27 27 27 27 27 27 27 27 298950000 495200000 4084900 562540000 276350000 262590000 333800000 205910000 215350000 245310000 327980000 278380000 462330000 27627000 564640000 266630000 284740000 331920000 213390000 228260000 237960000 312910000 34 34 23 34 34 34 34 34 34 34 34 221650000000 124160000000 97488000000 13017 489 12097 68860;68861;68862;68863;68864;68865;68866;68867;68868;68869;68870;68871;68872;68873;68874;68875;68876;68877;68878;68879;68880;68881;68882;68883;68884;68885;68886;68887;68888;68889;68890;68891;68892;68893;68894 83249;83250;83251;83252;83253;83254;83255;83256;83257;83258;83259;83260;83261;83262;83263;83264;83265;83266;83267;83268;83269;83270;83271;83272;83273;83274;83275;83276;83277;83278;83279;83280;83281;83282;83283;83284;83285;83286;83287;83288;83289;83290;83291;83292;83293;83294;83295;83296;83297;83298;83299;83300;83301;83302;83303;83304;83305;83306;83307;83308;83309;83310;83311;83312;83313;83314 83276 66 LVINTEEVFRPYAK Unmodified 1677.909 0.90900673 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 1 By MS/MS By MS/MS 5.2 3.43 2 3 2 3 64.886 64.862 3 1.5017E-29 22180 20211116_3439_TMUAki_TMT10x_S_F1 205.88 174.27 24949000 43734000 495730 45490000 31235000 39902000 31142000 25950000 23721000 26780000 32298000 23234000 40815000 2618500 46200000 29977000 40681000 31364000 27114000 24761000 26120000 30891000 4 4 4 4 4 4 4 4 4 4 4 13443000 23498000 206330 24492000 19285000 27680000 18800000 14165000 12914000 14521000 17337000 12518000 21930000 1388600 24963000 18491000 27698000 18912000 15095000 13553000 14167000 16587000 2 2 2 2 2 2 2 2 2 2 2 11506000 20236000 289400 20999000 11950000 12222000 12343000 11786000 10807000 12259000 14961000 10715000 18885000 1229900 21237000 11485000 12983000 12452000 12019000 11209000 11953000 14304000 2 2 2 2 2 2 2 2 2 2 2 3110100000 1756900000 1353200000 13018 1433 12098 68895;68896;68897;68898;68899 83315;83316;83317;83318;83319 83318 5 LVIPSELGYGER Unmodified 1331.7085 0.70851601 822 P26885 FKBP2 Peptidyl-prolyl cis-trans isomerase FKBP2 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 63.409 63.47 2 3.0617E-19 20106 20211116_3433_TMUAki_TMT10x_P_F5 222.28 190.91 21205000 36115000 58339 37567000 25808000 30519000 24560000 27401000 25579000 27350000 29552000 19744000 33705000 1796400 38116000 24713000 31455000 25009000 28016000 26118000 26713000 28385000 5 5 2 5 5 5 5 5 5 5 5 8321200 13483000 0 13881000 9944000 16308000 9985500 9422300 9457300 9904000 10700000 7747500 12582000 667060 14169000 9532800 16309000 10110000 9941900 9688400 9652900 10284000 2 2 0 2 2 2 2 2 2 2 2 12884000 22633000 58339 23686000 15864000 14210000 14575000 17979000 16121000 17446000 18852000 11996000 21123000 1129400 23947000 15180000 15145000 14899000 18074000 16430000 17060000 18101000 3 3 2 3 3 3 3 3 3 3 3 1860500000 783580000 1076900000 13019 822 12099 68900;68901;68902;68903;68904;68905 83320;83321;83322;83323;83324;83325;83326;83327 83321 8 LVIVHPEVTVK Unmodified 1232.7493 0.74925861 1265 P57678 GEMIN4 Gem-associated protein 4 yes yes 0 0 0 0 By MS/MS 7 0 1 1 50.826 51.318 3 0.057291 16371 20211116_3446_TMUAki_TMT10x_S_F7 45.879 30.613 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13020 1265 12100 68906 83328 83328 1 LVKPGNQNTQVTEAWNK Unmodified 1925.9959 0.99592426 3217 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 0 1 By MS/MS By MS/MS 4.33 3.3 3 2 4 4 5 49.302 49.246 3;4 5.1246E-47 13842 20211116_3436_TMUAki_TMT10x_P_F8 238.81 223.65 35733000 57588000 423840 87125000 99150000 62078000 56849000 34907000 34872000 32058000 58482000 33273000 53846000 4143400 86421000 94025000 64175000 59196000 36777000 37275000 31427000 55684000 14 14 8 14 14 14 14 14 14 14 14 22396000 33759000 363090 51085000 90351000 54519000 48307000 20724000 20186000 18979000 35005000 20855000 31566000 3131100 50942000 85597000 54569000 50328000 22724000 22292000 18608000 33309000 9 9 7 9 9 9 9 9 9 9 9 13337000 23828000 60743 36040000 8799000 7559400 8542200 14182000 14686000 13080000 23477000 12418000 22280000 1012300 35478000 8428500 9606600 8868300 14052000 14983000 12820000 22375000 5 5 1 5 5 5 5 5 5 5 5 3691800000 2749200000 942640000 13021 3217 12101 68907;68908;68909;68910;68911;68912;68913;68914;68915 83329;83330;83331;83332;83333;83334;83335;83336;83337;83338;83339;83340;83341;83342 83337 14 LVLADLLEPVK Unmodified 1208.738 0.73802523 2695 Q9BVJ6;Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 79.83 79.866 2 5.0429E-14 28180 20211116_3446_TMUAki_TMT10x_S_F7 150.08 94.359 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13022 2695 12102 68916;68917 83343;83344 83344 2 LVLDSVKLEA Unmodified 1085.6332 0.6332258 323 O75347 TBCA Tubulin-specific chaperone A yes yes 0 0 0 1 By MS/MS By MS/MS 4.53 1.42 2 2 4 4 4 1 8 9 68.465 68.403 2;3 0.00010037 21892 20211116_3440_TMUAki_TMT10x_S_F2 102.06 60.078 107960000 178960000 526510 174680000 139850000 166480000 123050000 131050000 120830000 116850000 139120000 100520000 166970000 8812400 178380000 133630000 169310000 125630000 134610000 123670000 114710000 133630000 15 15 11 15 15 15 15 15 15 15 15 51374000 81573000 247580 78103000 66099000 105780000 62868000 59939000 55833000 53683000 63222000 47834000 76104000 4479100 80337000 63299000 105020000 63721000 63068000 57371000 52687000 60759000 9 9 7 9 9 9 9 9 9 9 9 56591000 97386000 278930 96577000 73748000 60700000 60185000 71116000 65000000 63169000 75895000 52687000 90869000 4333300 98045000 70334000 64284000 61907000 71542000 66302000 62022000 72875000 6 6 4 6 6 6 6 6 6 6 6 11132000000 6074800000 5057100000 13023 323 12103 68918;68919;68920;68921;68922;68923;68924;68925;68926;68927;68928;68929;68930;68931;68932;68933;68934 83345;83346;83347;83348;83349;83350;83351;83352;83353;83354;83355;83356;83357;83358;83359;83360;83361;83362;83363 83355 19 LVLEQVVTSIASVADTAEEK Unmodified 2101.1154 0.11543027 84 O00410;O00410-2;O00410-3 IPO5 Importin-5 yes no 0 0 0 0 By MS/MS By MS/MS 5.55 1.88 1 1 1 2 2 2 2 5 6 82.862 82.866 3 2.3626E-52 26891 20211116_3434_TMUAki_TMT10x_P_F6 237 220.87 43819000 68014000 327090 68898000 40174000 50410000 46865000 27022000 25503000 32844000 45918000 40799000 63467000 3168800 69949000 38681000 51969000 46526000 28829000 27604000 31838000 43663000 16 16 9 16 16 16 16 16 16 16 16 23707000 37409000 186230 37692000 21776000 35327000 24079000 16763000 15367000 19341000 25230000 22074000 34908000 1728300 38397000 20943000 35718000 24034000 18058000 16364000 18784000 24033000 9 9 4 9 9 9 9 9 9 9 9 20112000 30604000 140860 31206000 18398000 15083000 22786000 10259000 10136000 13503000 20688000 18725000 28559000 1440500 31552000 17738000 16252000 22492000 10771000 11240000 13054000 19630000 7 7 5 7 7 7 7 7 7 7 7 6658000000 3207600000 3450400000 13024 84 12104 68935;68936;68937;68938;68939;68940;68941;68942;68943;68944;68945 83364;83365;83366;83367;83368;83369;83370;83371;83372;83373;83374;83375;83376;83377;83378;83379 83368 16 LVLEVAQHLGESTVR Unmodified 1649.9101 0.91006937 518 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5.19 2.48 2 2 1 2 2 4 3 7 9 67.522 67.572 2;3 5.0983E-38 22916 20211116_3446_TMUAki_TMT10x_S_F7 247.9 235.11 53994000 89817000 603500 85914000 60796000 90977000 62398000 62004000 59978000 65536000 67869000 50274000 83794000 4665900 87998000 58340000 91718000 63135000 64609000 61403000 63860000 65226000 22 22 13 22 22 22 22 22 22 22 22 29779000 46639000 257650 45245000 31320000 61576000 34554000 33261000 32923000 34839000 36404000 27727000 43513000 2379800 46500000 30105000 61086000 34830000 35294000 33688000 33961000 35010000 11 11 5 11 11 11 11 11 11 11 11 24214000 43179000 345850 40668000 29476000 29401000 27845000 28743000 27054000 30696000 31465000 22547000 40281000 2286100 41497000 28235000 30632000 28305000 29316000 27714000 29899000 30217000 11 11 8 11 11 11 11 11 11 11 11 25099000000 13755000000 11344000000 13025 518 12105 68946;68947;68948;68949;68950;68951;68952;68953;68954;68955;68956;68957;68958;68959;68960;68961 83380;83381;83382;83383;83384;83385;83386;83387;83388;83389;83390;83391;83392;83393;83394;83395;83396;83397;83398;83399;83400;83401;83402 83399 23 LVLIGGCRNK Carbamidomethyl (C) 1185.6652 0.66521141 1880 Q2TAA5 ALG11 GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase yes yes 0 1 0 1 By MS/MS 7 0 1 1 85.837 85.845 2 0.070262 30201 20211116_3435_TMUAki_TMT10x_P_F7 56.011 29.627 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13026 1880 12106 68962 83403 83403 13 1 LVLLGESAVGK Unmodified 1084.6492 0.64921022 1150;1288 P51148;P51148-2;P20339;P61020-2;P20339-2;P61020 RAB5C;RAB5A;RAB5B Ras-related protein Rab-5C;Ras-related protein Rab-5A;Ras-related protein Rab-5B no no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 66.535 66.784 2 7.6918E-16 20954 20211116_3436_TMUAki_TMT10x_P_F8 208.03 136.53 33210000 58525000 208570 60700000 47560000 49618000 40041000 34660000 27270000 31675000 43727000 30922000 54618000 3077600 61604000 45421000 50895000 40613000 35906000 28885000 31058000 41672000 4 4 3 4 4 4 4 4 4 4 4 15879000 27242000 189110 29338000 29195000 34795000 22437000 16563000 13244000 14993000 20784000 14786000 25428000 1608200 29863000 27830000 34701000 22828000 17713000 14143000 14708000 19816000 2 2 1 2 2 2 2 2 2 2 2 17330000 31283000 19454 31362000 18365000 14823000 17604000 18097000 14026000 16682000 22943000 16136000 29191000 1469400 31741000 17591000 16194000 17785000 18192000 14742000 16351000 21857000 2 2 2 2 2 2 2 2 2 2 2 3294400000 1965900000 1328500000 13027 1150;1288 12107 68963;68964;68965;68966 83404;83405;83406;83407 83405 4 LVLPAPQISDAELQEVVK Unmodified 1948.0881 0.088093311 2574 Q99459 CDC5L Cell division cycle 5-like protein yes yes 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 2 3 78.425 78.415 3 5.4979E-09 26304 20211116_3433_TMUAki_TMT10x_P_F5 119.23 106.25 15736000 25047000 126940 23879000 16350000 22337000 17577000 12472000 11302000 13242000 17449000 14651000 23367000 1219900 24420000 15702000 22629000 17570000 13201000 11991000 12902000 16642000 3 3 2 3 3 3 3 3 3 3 3 11206000 17542000 69714 16984000 10460000 17816000 12176000 8688700 8146800 9255500 12350000 10433000 16367000 771930 17378000 10063000 17894000 12137000 9311700 8613400 9016000 11784000 2 2 1 2 2 2 2 2 2 2 2 4529700 7504400 57228 6895200 5889700 4520900 5400000 3783100 3155700 3987000 5098500 4218000 7000200 447930 7041800 5638500 4735400 5433600 3889700 3377500 3885500 4858100 1 1 1 1 1 1 1 1 1 1 1 5816900000 1936300000 3880700000 13028 2574 12108 68967;68968;68969;68970;68971 83408;83409;83410 83408 3 LVLPPPDPLDLPLR Unmodified 1553.9181 0.91811486 1811 Q15477 SKIV2L Helicase SKI2W yes yes 0 0 0 0 By MS/MS 7 0 1 1 79.46 79.5 2 0.00012325 28055 20211116_3446_TMUAki_TMT10x_S_F7 96.009 72.158 2766400 4237500 0 4074200 3224900 2906800 3138900 2017300 1943500 2405300 3425900 2575200 3953500 151340 4150500 3084600 3013300 3151400 2107600 2082100 2333200 3258900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2766400 4237500 0 4074200 3224900 2906800 3138900 2017300 1943500 2405300 3425900 2575200 3953500 151340 4150500 3084600 3013300 3151400 2107600 2082100 2333200 3258900 1 1 0 1 1 1 1 1 1 1 1 343490000 0 343490000 13029 1811 12109 68972 83411 83411 1 LVLTNNQLTTLPR Unmodified 1481.8566 0.85657723 3215 Q9UQ13;Q9UQ13-2 SHOC2 Leucine-rich repeat protein SHOC-2 yes no 0 0 0 0 By MS/MS 3 0 1 1 62.162 61.726 2 1.2756E-33 21927 20211116_3441_TMUAki_TMT10x_S_F3 227.36 192.64 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13030 3215 12110 68973 83412 83412 1 LVLTQEQLHQLHSR Unmodified 1700.9322 0.93220179 1694 Q14203;Q14203-6;Q14203-3;Q14203-4;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 39.016 39.362 4 4.1076E-05 9174 20211116_3447_TMUAki_TMT10x_S_F8 97.866 84.91 4057000 6321200 4005.7 7158600 6739100 6344800 4847200 3454100 3924100 3551000 4926500 3777200 5901400 338780 7231700 6411900 6448900 4987100 3660700 4068100 3464100 4721400 5 5 1 5 5 5 5 5 5 5 5 3129300 4909200 4005.7 5589700 5839500 5593400 3739900 2807100 3129700 2820500 3852000 2913600 4583300 284320 5654400 5545600 5635400 3884400 2995100 3236200 2754100 3693500 4 4 1 4 4 4 4 4 4 4 4 927730 1412000 0 1568900 899550 751340 1107300 646970 794440 730440 1074500 863630 1318100 54458 1577200 866320 813500 1102700 665560 831840 709950 1027900 1 1 0 1 1 1 1 1 1 1 1 291020000 192750000 98261000 13031 1694 12111 68974;68975;68976 83413;83414;83415;83416;83417 83417 5 LVLVGDGGTGK Unmodified 1014.571 0.5709599 1368 P62826 RAN GTP-binding nuclear protein Ran yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 1.18 1 2 3 4 2 6 6 52.808 53.045 2;3 1.693E-18 14615 20211116_3434_TMUAki_TMT10x_P_F6 219.8 50.364 102870000 156280000 2243300 172840000 148780000 142740000 108960000 122100000 119840000 109040000 133720000 95795000 145890000 11138000 174710000 141780000 146800000 112940000 124800000 121930000 107030000 128560000 12 12 10 12 12 12 12 12 12 12 12 46351000 68063000 477280 75609000 93504000 95640000 55297000 59390000 54213000 51139000 59071000 43160000 63538000 4823900 76900000 88716000 95382000 58055000 61966000 55372000 50285000 56834000 5 5 3 5 5 5 5 5 5 5 5 56516000 88215000 1766000 97236000 55274000 47097000 53665000 62715000 65627000 57903000 74646000 52635000 82347000 6314100 97810000 53066000 51423000 54890000 62832000 66561000 56749000 71729000 7 7 7 7 7 7 7 7 7 7 7 12799000000 6130300000 6668500000 13032 1368 12112 68977;68978;68979;68980;68981;68982;68983;68984;68985;68986;68987;68988 83418;83419;83420;83421;83422;83423;83424;83425;83426;83427;83428;83429;83430;83431;83432 83422 15 LVLVSPTSEQYDSLLR Unmodified 1818.9727 0.9727292 67 O00178 GTPBP1 GTP-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.67 0.667 4 4 1 5 4 76.351 76.366 2;3 1.0882E-103 26266 20211116_3435_TMUAki_TMT10x_P_F7 327.1 230.77 20108000 34660000 104670 29659000 24610000 30414000 24418000 23491000 22003000 23275000 25412000 18722000 32323000 1721000 30621000 23592000 30781000 24703000 24227000 22611000 22741000 24409000 8 8 4 8 8 8 8 8 8 8 8 9181400 16051000 68473 13789000 8860100 17941000 10932000 11009000 10101000 10953000 11160000 8549200 14969000 811090 14289000 8551100 17865000 10955000 11541000 10350000 10700000 10733000 4 4 2 4 4 4 4 4 4 4 4 10926000 18609000 36192 15869000 15750000 12473000 13485000 12482000 11902000 12322000 14253000 10173000 17354000 909880 16332000 15041000 12917000 13748000 12686000 12261000 12041000 13676000 4 4 2 4 4 4 4 4 4 4 4 3917800000 1629300000 2288600000 13033 67 12113 68989;68990;68991;68992;68993;68994;68995;68996;68997 83433;83434;83435;83436;83437;83438;83439;83440;83441;83442 83437 10 LVMAGETTNSR Unmodified 1177.5761 0.57612163 811 P26358;P26358-2;P26358-3 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 0 0 0 0 By MS/MS 4 0 1 1 34.843 34.929 2 0.00089979 8806 20211116_3442_TMUAki_TMT10x_S_F4 84.615 64.828 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13034 811 12114 68998 83443 83443 1 LVMEEAPESYK Oxidation (M) 1310.6064 0.60641871 3285 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog yes yes 0 0 1 0 By MS/MS 3 0 1 1 45.854 45.871 3 0.0034288 14302 20211116_3430_TMUAki_TMT10x_P_F3 67.08 51.814 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13035 3285 12115 68999 83444 83444 3254 1 LVNACLAEELPHIHAFEQK Unmodified 2218.1205 0.12047285 2798 Q9H3K6 BOLA2 BolA-like protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.11 1.45 2 1 2 2 2 5 4 65.61 65.666 4 2.0701E-24 20249 20211116_3445_TMUAki_TMT10x_S_F6 176.46 162.21 58465000 91391000 632110 90496000 63548000 86699000 69730000 58668000 52739000 65527000 69642000 54439000 85274000 4375000 92328000 61107000 87928000 69881000 61270000 54996000 63715000 66657000 11 11 6 11 11 11 11 11 11 11 11 35719000 52538000 199950 52306000 34436000 62306000 41722000 33544000 29329000 37142000 40514000 33258000 49023000 2074200 53526000 33200000 62210000 41556000 35665000 30777000 36126000 38736000 7 7 4 7 7 7 7 7 7 7 7 22746000 38853000 432160 38191000 29112000 24393000 28008000 25124000 23410000 28386000 29128000 21181000 36252000 2300800 38801000 27907000 25717000 28325000 25605000 24219000 27588000 27921000 4 4 2 4 4 4 4 4 4 4 4 19552000000 10593000000 8959000000 13036 2798 12116 69000;69001;69002;69003;69004;69005;69006;69007;69008 83445;83446;83447;83448;83449;83450;83451;83452;83453;83454;83455 83454 11 LVNELTEFAK Unmodified 1162.6234 0.6233894 38 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS 4.22 1.61 1 3 4 4 6 3 2 11 12 72.012 71.957 2;3 4.7567E-14 22720 20211116_3445_TMUAki_TMT10x_S_F6 226.96 161.65 + 173830000 237590000 1618700 229630000 271790000 279800000 236070000 457650000 445310000 376970000 291020000 161860000 221670000 15812000 235580000 259710000 285950000 247800000 453910000 438400000 371490000 285520000 29 29 14 29 29 29 29 29 29 29 29 100350000 131960000 441650 126530000 181740000 226100000 178420000 263720000 263940000 213610000 161980000 93434000 123110000 8974400 130960000 174150000 225040000 183800000 264740000 261150000 210680000 159410000 16 16 6 16 16 16 16 16 16 16 16 73482000 105640000 1177000 103100000 90041000 53702000 57653000 193920000 181370000 163360000 129040000 68423000 98560000 6837500 104620000 85555000 60906000 64004000 189180000 177240000 160810000 126100000 13 13 8 13 13 13 13 13 13 13 13 29151000000 16126000000 13025000000 13037 38 12117 69009;69010;69011;69012;69013;69014;69015;69016;69017;69018;69019;69020;69021;69022;69023;69024;69025;69026;69027;69028;69029;69030;69031 83456;83457;83458;83459;83460;83461;83462;83463;83464;83465;83466;83467;83468;83469;83470;83471;83472;83473;83474;83475;83476;83477;83478;83479;83480;83481;83482;83483;83484;83485;83486;83487;83488 83483 33 LVNHFVEEFK Unmodified 1260.6503 0.65027285 596 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 0 0 By MS/MS By MS/MS 5.88 1.41 1 2 3 4 4 2 9 7 59.595 59.812 2;3 1.8548E-12 19790 20211116_3446_TMUAki_TMT10x_S_F7 188.87 148.81 112800000 170440000 521900 201430000 154710000 179430000 125260000 142380000 136390000 137390000 150250000 105030000 159150000 10094000 202980000 147610000 183310000 128940000 146490000 138760000 134390000 144510000 15 15 9 15 15 15 15 15 15 15 15 69254000 103000000 331680 118850000 104410000 135070000 79400000 84049000 79939000 81680000 90346000 64483000 96172000 6284300 120370000 99488000 135450000 81863000 87959000 81669000 79871000 86831000 9 9 5 9 9 9 9 9 9 9 9 43545000 67434000 190210 82581000 50295000 44360000 45858000 58335000 56454000 55711000 59904000 40546000 62979000 3809900 82605000 48121000 47862000 47076000 58527000 57091000 54518000 57680000 6 6 4 6 6 6 6 6 6 6 6 16306000000 8930200000 7375400000 13038 596 12118 69032;69033;69034;69035;69036;69037;69038;69039;69040;69041;69042;69043;69044;69045;69046;69047 83489;83490;83491;83492;83493;83494;83495;83496;83497;83498;83499;83500;83501;83502;83503;83504;83505;83506;83507 83506 19 LVNHFVEEFKR Unmodified 1416.7514 0.75138388 596 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 0 1 By MS/MS By MS/MS 4.78 3.39 4 1 4 5 4 53.5 53.528 3;4 3.0287E-16 15015 20211116_3447_TMUAki_TMT10x_S_F8 208.56 186.89 28607000 45438000 129360 45666000 60798000 69771000 39348000 57568000 58256000 52852000 48050000 26635000 42399000 2706700 46931000 57749000 69317000 41619000 59006000 58076000 51813000 46668000 8 8 5 8 8 8 8 8 8 8 8 20530000 31695000 42335 31338000 50961000 59847000 31118000 40674000 41845000 37858000 33636000 19114000 29574000 1931300 32422000 48352000 58778000 32934000 42238000 41809000 37090000 32702000 4 4 1 4 4 4 4 4 4 4 4 8076900 13742000 87024 14328000 9837700 9924200 8230300 16893000 16412000 14995000 14414000 7521000 12825000 775390 14510000 9397700 10538000 8685700 16768000 16267000 14723000 13966000 4 4 4 4 4 4 4 4 4 4 4 6540400000 4168400000 2372000000 13039 596 12119 69048;69049;69050;69051;69052;69053;69054;69055;69056 83508;83509;83510;83511;83512;83513;83514;83515;83516 83515 9 LVNLQHLDLLNNK Unmodified 1532.8675 0.86747627 2409 Q96AG4 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 0 0 0 0 By MS/MS By MS/MS 4.14 3.09 2 2 1 2 4 3 66.733 66.718 3 3.0308E-19 20795 20211116_3428_TMUAki_TMT10x_P_F1 184.1 167.15 75545000 124260000 588150 139030000 76636000 101060000 80493000 64026000 74113000 70269000 87375000 70341000 116010000 6416900 140220000 73588000 104460000 81249000 67153000 76147000 68371000 83877000 9 9 6 9 9 9 9 9 9 9 9 34873000 55539000 334440 61920000 42375000 64053000 42397000 30203000 34755000 32032000 39931000 32472000 51848000 3163200 62750000 40643000 64360000 42768000 32471000 35875000 31208000 38359000 4 4 3 4 4 4 4 4 4 4 4 40671000 68724000 253710 77105000 34261000 37008000 38096000 33823000 39358000 38237000 47444000 37869000 64158000 3253700 77468000 32946000 40103000 38481000 34682000 40271000 37163000 45518000 5 5 3 5 5 5 5 5 5 5 5 11454000000 6997300000 4456500000 13040 2409 12120 69057;69058;69059;69060;69061;69062;69063 83517;83518;83519;83520;83521;83522;83523;83524;83525 83517 9 LVNLQHLDLLNNKLVTLPVSFAQLK Unmodified 2829.648 0.64803501 2409 Q96AG4 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 0 0 0 1 By MS/MS 7 0 1 1 79.744 79.776 4 0.1046 27690 20211116_3435_TMUAki_TMT10x_P_F7 32.491 24.958 4063300 5757700 24609 5075200 3466200 8880500 5328000 4372100 3297900 4425800 5037900 3783500 5370000 351450 5282600 3371900 8710800 5244200 4674400 3505600 4320200 4806000 1 1 1 1 1 1 1 1 1 1 1 4063300 5757700 24609 5075200 3466200 8880500 5328000 4372100 3297900 4425800 5037900 3783500 5370000 351450 5282600 3371900 8710800 5244200 4674400 3505600 4320200 4806000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 437200000 437200000 0 13041 2409 12121 69064 83526 83526 1 LVNNGEKLEFLHK Unmodified 1539.8409 0.84092717 1798 Q15393;Q15393-3 SF3B3 Splicing factor 3B subunit 3 yes no 0 0 0 1 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 52.026 52.282 4 7.6616E-23 14552 20211116_3447_TMUAki_TMT10x_S_F8 210.14 184.92 15842000 27002000 230860 25404000 31429000 34049000 19678000 31837000 32836000 26504000 27635000 14752000 25190000 1742300 26159000 29854000 34104000 20982000 32322000 32645000 26105000 26819000 7 7 6 7 7 7 7 7 7 7 7 9509500 15557000 109780 15407000 24853000 27668000 14754000 17619000 18770000 14762000 16330000 8855000 14516000 1101100 15911000 23582000 27204000 15618000 18336000 18833000 14535000 15828000 4 4 3 4 4 4 4 4 4 4 4 6332100 11445000 121080 9997400 6576000 6381000 4923200 14218000 14066000 11742000 11305000 5896700 10674000 641230 10247000 6271200 6899700 5363200 13986000 13811000 11570000 10991000 3 3 3 3 3 3 3 3 3 3 3 2183500000 1297400000 886080000 13042 1798 12122 69065;69066;69067;69068;69069 83527;83528;83529;83530;83531;83532;83533 83532 7 LVNQQLLADPLVPPQLTIK Unmodified 2099.2354 0.23542625 842 P28331;P28331-3;P28331-4;P28331-5;P28331-2 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 0 0 0 0 By matching By MS/MS 2 0 2 1 1 79.451 79.43 3 6.9484E-09 26221 20211116_3440_TMUAki_TMT10x_S_F2 116.29 104.01 8272800 13106000 0 13241000 11631000 9014400 11390000 5179400 5610400 6231500 8973600 7700900 12230000 497770 13435000 11131000 9357700 11387000 5491100 6079900 6042600 8552400 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8272800 13106000 0 13241000 11631000 9014400 11390000 5179400 5610400 6231500 8973600 7700900 12230000 497770 13435000 11131000 9357700 11387000 5491100 6079900 6042600 8552400 2 2 0 2 2 2 2 2 2 2 2 2505200000 1194600000 1310600000 13043 842 12123 69070;69071 83534;83535 83534 2 LVNTGLLTLR Unmodified 1098.6761 0.67609367 2732 Q9BYT8 NLN Neurolysin, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 65.841 65.383 2 1.3289E-08 22390 20211116_3430_TMUAki_TMT10x_P_F3 128.58 94.575 2873800 5442500 31494 5344400 3674000 3131900 3109300 3186500 3366500 3458400 3973900 2676000 5078100 278820 5426000 3510500 3328300 3191400 3245200 3435100 3366400 3814700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2873800 5442500 31494 5344400 3674000 3131900 3109300 3186500 3366500 3458400 3973900 2676000 5078100 278820 5426000 3510500 3328300 3191400 3245200 3435100 3366400 3814700 1 1 1 1 1 1 1 1 1 1 1 338620000 0 338620000 13044 2732 12124 69072;69073 83536;83537 83536 2 LVNWSCTLNSAISDIEVDKK Unmodified 2291.1467 0.14674718 820 P26640;P26640-2 VARS Valine--tRNA ligase yes no 0 0 0 1 By MS/MS By MS/MS 8 0 3 2 1 78.599 78.593 3;4 6.5203E-13 25235 20211116_3447_TMUAki_TMT10x_S_F8 132.13 123.64 15455000 24767000 166730 25114000 17016000 18082000 19514000 7782500 6713300 10033000 17192000 14390000 23111000 1212400 25491000 16373000 18623000 19267000 8499900 7761600 9706300 16260000 3 3 1 3 3 3 3 3 3 3 3 9376200 14253000 166730 14041000 9072600 12887000 11747000 5006400 4637600 6036200 10044000 8729700 13299000 717070 14322000 8762900 13022000 11556000 5518700 5220900 5852900 9522000 2 2 1 2 2 2 2 2 2 2 2 6079100 10514000 0 11072000 7943500 5195100 7766300 2776100 2075700 3997100 7147600 5660000 9812600 495340 11168000 7609900 5600600 7710800 2981100 2540700 3853400 6738000 1 1 0 1 1 1 1 1 1 1 1 3433100000 2310000000 1123100000 13045 820 12125 69074;69075;69076 83538;83539;83540 83540 3 LVNYPGFNISTPR Unmodified 1476.7725 0.77251325 1988 Q6NZY4;Q6NZY4-2 ZCCHC8 Zinc finger CCHC domain-containing protein 8 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 65.333 64.874 2 1.1335E-11 23262 20211116_3441_TMUAki_TMT10x_S_F3 154.15 129.23 2050900 3257500 0 3404500 2569300 2256500 2247700 3017100 2848600 2922500 2856200 1909200 3040100 129450 3445600 2452400 2386700 2315400 3026400 2871900 2858200 2755100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2050900 3257500 0 3404500 2569300 2256500 2247700 3017100 2848600 2922500 2856200 1909200 3040100 129450 3445600 2452400 2386700 2315400 3026400 2871900 2858200 2755100 1 1 0 1 1 1 1 1 1 1 1 309050000 0 309050000 13046 1988 12126 69077;69078 83541;83542 83542 2 LVPGGGATEIELAK Unmodified 1353.7504 0.75038083 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 By MS/MS By MS/MS 4.91 0.793 4 4 3 5 6 61.816 61.875 2;3 1.8423E-13 19752 20211116_3442_TMUAki_TMT10x_S_F4 128.08 89.514 43206000 76256000 579930 65535000 63173000 107950000 59802000 129750000 112030000 100000000 83526000 40234000 71115000 4396600 68248000 60523000 107840000 62452000 129930000 110680000 98891000 81457000 11 11 10 11 11 11 11 11 11 11 11 21276000 35322000 187970 31162000 30251000 66434000 30220000 57708000 46972000 43436000 36396000 19812000 32943000 2059300 32611000 29016000 65306000 31174000 58687000 46677000 43010000 35437000 6 6 5 6 6 6 6 6 6 6 6 21930000 40934000 391950 34373000 32922000 41513000 29581000 72039000 65059000 56564000 47130000 20422000 38171000 2337400 35636000 31507000 42537000 31279000 71240000 63998000 55881000 46020000 5 5 5 5 5 5 5 5 5 5 5 5574900000 2878000000 2696900000 13047 1146 12127 69079;69080;69081;69082;69083;69084;69085;69086;69087;69088;69089 83543;83544;83545;83546;83547;83548;83549;83550;83551;83552;83553 83550 11 LVPGPVFGSK Unmodified 999.57532 0.57531699 1577 Q12907 LMAN2 Vesicular integral-membrane protein VIP36 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 61.498 61.219 2 1.312E-07 18952 20211116_3440_TMUAki_TMT10x_S_F2 122.13 73.631 5348100 8886400 32733 7382900 8177500 11533000 6915800 6813900 6663100 6432300 7281300 4979900 8286300 513530 7700100 7811200 11387000 7073200 7154700 6811600 6297900 7004800 1 1 1 1 1 1 1 1 1 1 1 5348100 8886400 32733 7382900 8177500 11533000 6915800 6813900 6663100 6432300 7281300 4979900 8286300 513530 7700100 7811200 11387000 7073200 7154700 6811600 6297900 7004800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 523900000 523900000 0 13048 1577 12128 69090;69091 83554;83555 83555 2 LVPGRHDIAFVEFENDGQAGAAR Unmodified 2468.2197 0.21966962 559 P08579 SNRPB2 U2 small nuclear ribonucleoprotein B'' yes yes 0 0 0 1 By MS/MS By MS/MS 5.14 0.833 2 2 3 4 3 54.059 54.184 3;4 6.9953E-44 15164 20211116_3434_TMUAki_TMT10x_P_F6 201.85 187.59 26391000 43258000 50421 43901000 35370000 43008000 27648000 34034000 34226000 32602000 33738000 24571000 40367000 1738700 44728000 33704000 43667000 28652000 35014000 34514000 31900000 32561000 8 8 2 8 8 8 8 8 8 8 8 14551000 24057000 8825.2 23540000 21394000 32677000 18511000 19073000 18511000 18262000 19151000 13547000 22446000 1153900 24188000 20432000 32420000 18928000 20054000 18854000 17869000 18455000 4 4 1 4 4 4 4 4 4 4 4 11840000 19202000 41596 20361000 13976000 10331000 9136800 14961000 15715000 14340000 14587000 11024000 17921000 584780 20540000 13273000 11247000 9724500 14959000 15660000 14031000 14106000 4 4 1 4 4 4 4 4 4 4 4 8460100000 4460100000 4000000000 13049 559 12129 69092;69093;69094;69095;69096;69097;69098 83556;83557;83558;83559;83560;83561;83562;83563;83564 83560 9 LVPGWTKPITIGR Unmodified 1436.8504 0.85036964 1083 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 6 0.632 1 3 1 3 2 62.11 62.275 3 9.4553E-13 18453 20211116_3434_TMUAki_TMT10x_P_F6 136.33 109 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13050 1083 12130 69099;69100;69101;69102;69103 83565;83566;83567;83568;83569 83565 5 LVPLKETIK Unmodified 1039.6641 0.664132 518 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 52.257 52.194 3 0.02376 14878 20211116_3428_TMUAki_TMT10x_P_F1 62.166 44.693 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13051 518 12131 69104;69105;69106 83570;83571;83572 83570 3 LVPLLDTGDIIIDGGNSEYR Unmodified 2159.111 0.1110136 1170 P52209;P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 By MS/MS By MS/MS 2.75 1.3 5 2 1 5 3 52.823 52.747 2;3 5.0293E-43 29207 20211116_3441_TMUAki_TMT10x_S_F3 218.56 207.35 14370000 23955000 61309 21402000 14206000 21984000 17653000 13410000 13710000 14826000 17412000 13378000 22343000 935310 22023000 13692000 22167000 17604000 14109000 14252000 14421000 16682000 6 7 1 7 7 7 7 7 7 7 7 9236200 14427000 61309 13141000 8044000 16040000 10369000 7865000 8475200 9003300 9985800 8599500 13458000 702560 13540000 7768500 15978000 10337000 8443300 8758500 8746200 9586200 3 4 1 4 4 4 4 4 4 4 4 5133800 9527500 0 8260800 6162200 5943800 7284500 5544700 5235200 5822200 7426400 4778500 8885500 232750 8482200 5923400 6189100 7266800 5665900 5493300 5674900 7096100 3 3 0 3 3 3 3 3 3 3 3 6655900000 4089300000 2566600000 13052 1170 12132 69107;69108;69109;69110;69111;69112;69113;69114 83573;83574;83575;83576;83577;83578;83579 83579 7 LVPLLDTGDIIIDGGNSEYRDTTR Unmodified 2632.3344 0.33442461 1170 P52209;P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 1 By MS/MS By MS/MS 3.56 1.71 1 2 2 1 1 2 3 6 77.944 77.899 3 8.7158E-60 28370 20211116_3441_TMUAki_TMT10x_S_F3 219.04 205.85 35005000 60114000 351170 51233000 41669000 51411000 45228000 35780000 31814000 38443000 44000000 32593000 56059000 2982800 52896000 40043000 52012000 45276000 37248000 33385000 37436000 42068000 11 11 6 11 11 11 11 11 11 11 11 15181000 24266000 264240 20378000 13275000 26952000 18619000 14537000 12511000 15862000 17025000 14136000 22629000 1348900 21162000 12871000 26772000 18418000 15447000 13155000 15437000 16284000 4 4 3 4 4 4 4 4 4 4 4 19824000 35847000 86933 30855000 28395000 24460000 26609000 21243000 19303000 22581000 26975000 18457000 33431000 1634000 31734000 27173000 25240000 26858000 21801000 20230000 21999000 25785000 7 7 3 7 7 7 7 7 7 7 7 17696000000 6398400000 11298000000 13053 1170 12133 69115;69116;69117;69118;69119;69120;69121;69122;69123 83580;83581;83582;83583;83584;83585;83586;83587;83588;83589 83587 10 LVPLLDTGDIIIDGGNSEYRDTTRR Unmodified 2788.4355 0.43553563 1170 P52209;P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 2 By MS/MS By MS/MS 4.62 1.69 2 2 2 2 3 2 7 6 72.181 72.141 3;4 1.4927E-29 26165 20211116_3441_TMUAki_TMT10x_S_F3 173.09 164.27 33802000 58525000 425140 49460000 41555000 50408000 40360000 42175000 37505000 38564000 43167000 31476000 54576000 1683100 51112000 39834000 51109000 40913000 43188000 38480000 37812000 41467000 19 19 7 19 19 19 19 19 19 19 19 18770000 29946000 259870 27422000 19168000 33367000 21729000 22972000 20118000 20195000 22375000 17478000 27933000 770830 28242000 18459000 33392000 21857000 23798000 20617000 19838000 21514000 9 9 3 9 9 9 9 9 9 9 9 15032000 28579000 165270 22038000 22387000 17040000 18631000 19203000 17387000 18369000 20792000 13997000 26643000 912270 22870000 21375000 17717000 19056000 19390000 17863000 17975000 19952000 10 10 4 10 10 10 10 10 10 10 10 45935000000 24475000000 21459000000 13054 1170 12134 69124;69125;69126;69127;69128;69129;69130;69131;69132;69133;69134;69135;69136 83590;83591;83592;83593;83594;83595;83596;83597;83598;83599;83600;83601;83602;83603;83604;83605;83606;83607;83608;83609 83603 20 LVPMGFTTATEFHQR Oxidation (M) 1749.8508 0.85083993 1531 Q06609;Q06609-3 RAD51 DNA repair protein RAD51 homolog 1 yes no 0 0 1 0 By MS/MS By MS/MS 8 0 2 1 1 51.47 51.464 3 5.8728E-10 14190 20211116_3447_TMUAki_TMT10x_S_F8 133.48 114.42 5003900 8694800 55121 8813700 7886900 9770000 6096900 8141500 7293400 6673800 6978600 4659500 8113700 506610 8997400 7520700 9857400 6315000 8315900 7356200 6578400 6741700 3 3 3 3 3 3 3 3 3 3 3 3630400 6377500 16377 6332300 6496300 8643500 4887200 6039200 5313600 4852800 4981800 3380400 5950700 356390 6497800 6189500 8604300 5054600 6236200 5375300 4788400 4816100 2 2 2 2 2 2 2 2 2 2 2 1373500 2317400 38743 2481400 1390600 1126500 1209700 2102300 1979700 1821000 1996700 1279100 2163000 150220 2499600 1331200 1253100 1260400 2079800 1980900 1790100 1925600 1 1 1 1 1 1 1 1 1 1 1 479480000 293130000 186340000 13055 1531 12135 69137;69138 83610;83611;83612 83612 2065 3 LVPQQLAH Unmodified 904.51305 0.51305109 608 P10606 COX5B Cytochrome c oxidase subunit 5B, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 42.811 42.942 2 0.0036945 10881 20211116_3445_TMUAki_TMT10x_S_F6 100.27 88.368 7204300 12018000 227190 13312000 11720000 10647000 8126400 9719700 9644600 8133700 10438000 6709600 11219000 872260 13449000 11161000 10990000 8477800 9881700 9773400 8009200 10045000 4 4 4 4 4 4 4 4 4 4 4 3717900 6188000 88671 6526200 8184200 7809600 5122600 4649400 4734600 3986300 5111200 3462400 5775300 453430 6653100 7775800 7805700 5344100 4866800 4847000 3920600 4918900 2 2 2 2 2 2 2 2 2 2 2 3486400 5829800 138520 6786000 3535400 2837200 3003800 5070400 4910000 4147400 5327000 3247200 5443400 418830 6796200 3385000 3184100 3133700 5014900 4926400 4088600 5125900 2 2 2 2 2 2 2 2 2 2 2 352830000 142380000 210450000 13056 608 12136 69139;69140;69141 83613;83614;83615;83616 83616 4 LVPSQEETK Unmodified 1029.5342 0.53424004 1091 P49321;P49321-3;P49321-4 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 37.172 37.09 2 0.0010465 12255 20211116_3441_TMUAki_TMT10x_S_F3 104.42 62.975 611240 1046300 12386 1174600 537360 402780 641370 403700 495390 404240 735320 569220 976800 61185 1177700 518610 457960 640610 410420 518880 394780 701910 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 611240 1046300 12386 1174600 537360 402780 641370 403700 495390 404240 735320 569220 976800 61185 1177700 518610 457960 640610 410420 518880 394780 701910 2 2 2 2 2 2 2 2 2 2 2 24785000 0 24785000 13057 1091 12137 69142;69143 83617;83618 83617 2 LVPSQEETKLSVEESEAAGDGVDTK Unmodified 2617.2607 0.26065054 1091 P49321;P49321-3;P49321-4 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 1 By MS/MS By MS/MS 2.33 1.03 3 4 3 2 6 6 59.057 58.854 3;4 4.798E-38 17948 20211116_3440_TMUAki_TMT10x_S_F2 187.17 168.45 38279000 72637000 300320 59312000 62085000 98657000 53690000 89166000 76290000 70132000 69511000 35642000 67728000 2861700 62037000 59327000 97865000 55599000 90567000 76383000 69279000 67264000 19 19 8 19 19 19 19 19 19 19 19 19416000 35419000 201740 28151000 37963000 73294000 36969000 45679000 39586000 36194000 33902000 18079000 33022000 1741800 29907000 36383000 71262000 37632000 47553000 39956000 35740000 32880000 9 9 4 9 9 9 9 9 9 9 9 18862000 37218000 98571 31161000 24122000 25362000 16721000 43487000 36704000 33938000 35609000 17563000 34706000 1119900 32130000 22944000 26602000 17967000 43014000 36427000 33539000 34385000 10 10 4 10 10 10 10 10 10 10 10 11492000000 7603700000 3887800000 13058 1091 12138 69144;69145;69146;69147;69148;69149;69150;69151;69152;69153;69154;69155 83619;83620;83621;83622;83623;83624;83625;83626;83627;83628;83629;83630;83631;83632;83633;83634;83635;83636;83637 83633 19 LVPSVNGVR Unmodified 939.55016 0.55016488 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 42.684 42.924 2 0.010586 11047 20211116_3436_TMUAki_TMT10x_P_F8 68.95 48.395 4723200 7632300 81897 8721500 8380300 7817900 5361200 5859400 5681500 5080700 6798100 4398400 7125800 516470 8806900 7964300 7976100 5605800 6032900 5805500 4994200 6523400 3 3 2 3 3 3 3 3 3 3 3 2852300 4429700 14911 4962900 6929000 6478500 3969700 3630500 3672600 3042400 4064100 2655900 4135400 304810 5048000 6570200 6442400 4172200 3817400 3763100 2995600 3908400 2 2 1 2 2 2 2 2 2 2 2 1870900 3202600 66986 3758600 1451300 1339400 1391400 2228900 2008900 2038400 2734100 1742500 2990400 211660 3758900 1394100 1533700 1433600 2215600 2042400 1998600 2615000 1 1 1 1 1 1 1 1 1 1 1 336520000 258650000 77878000 13059 629 12139 69156;69157;69158 83638;83639 83638 2 LVPTGLDFGQEGFTR Unmodified 1635.8257 0.82567103 1042 P46087;P46087-2;P46087-4;P46087-3 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 6.2 0.748 2 4 4 6 4 74.761 74.819 2;3 3.7398E-33 25580 20211116_3435_TMUAki_TMT10x_P_F7 221.75 205.49 47506000 80532000 819330 77446000 55563000 72119000 60051000 49079000 46422000 51840000 62329000 44236000 75133000 4451400 79146000 53415000 73281000 60255000 51145000 48387000 50516000 59635000 16 16 10 16 16 16 16 16 16 16 16 25403000 41449000 537780 41791000 26821000 47793000 32104000 25729000 24562000 27721000 32090000 23656000 38677000 2507300 42699000 25875000 47822000 32055000 27332000 25584000 26992000 30723000 9 9 7 9 9 9 9 9 9 9 9 22103000 39083000 281560 35654000 28741000 24326000 27947000 23350000 21860000 24119000 30239000 20580000 36456000 1944100 36446000 27540000 25458000 28201000 23813000 22803000 23524000 28911000 7 7 3 7 7 7 7 7 7 7 7 6365800000 3126800000 3239000000 13060 1042 12140 69159;69160;69161;69162;69163;69164;69165;69166;69167;69168 83640;83641;83642;83643;83644;83645;83646;83647;83648;83649;83650;83651;83652;83653;83654;83655;83656 83648 17 LVPVGYGIK Unmodified 944.5695 0.56950333 792 P24534 EEF1B2 Elongation factor 1-beta yes yes 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 59.991 59.794 2 6.2401E-06 19559 20211116_3429_TMUAki_TMT10x_P_F2 168.38 105.67 32491000 57072000 487600 47249000 52191000 70648000 40933000 63442000 62853000 49461000 52303000 30256000 53217000 2275500 49246000 49790000 70367000 42788000 64449000 62608000 48883000 50782000 4 4 3 4 4 4 4 4 4 4 4 18821000 31476000 221010 25801000 36909000 55380000 28040000 35636000 35725000 26520000 28395000 17526000 29349000 871120 27165000 35181000 54149000 29144000 36956000 35748000 26277000 27619000 2 2 1 2 2 2 2 2 2 2 2 13670000 25595000 266600 21448000 15282000 15269000 12894000 27806000 27128000 22941000 23908000 12730000 23868000 1404400 22081000 14609000 16218000 13644000 27493000 26861000 22606000 23163000 2 2 2 2 2 2 2 2 2 2 2 2449100000 1502200000 946960000 13061 792 12141 69169;69170;69171;69172 83657;83658;83659;83660 83658 4 LVPVGYGIKK Unmodified 1072.6645 0.66446635 792 P24534 EEF1B2 Elongation factor 1-beta yes yes 0 0 0 1 By MS/MS 4 0 1 1 51.855 51.933 3 1.7691E-05 15613 20211116_3442_TMUAki_TMT10x_S_F4 102.07 60.066 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13062 792 12142 69173 83661 83661 1 LVPVGYGIR Unmodified 972.57565 0.57565135 856;855 P29692;P29692-3;P29692-4;P29692-2 EEF1D Elongation factor 1-delta no no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 54.149 54.052 2 0.0049038 15694 20211116_3428_TMUAki_TMT10x_P_F1 74.717 3.8046 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13063 855;856 12143 69174;69175 83662;83663 83662 2 LVPVLSAK Unmodified 825.53239 0.53238955 966 P37837 TALDO1 Transaldolase yes yes 0 0 0 0 By MS/MS 2 0 1 1 58.438 58.181 2 0.091791 18929 20211116_3429_TMUAki_TMT10x_P_F2 58.596 20.436 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13064 966 12144 69176 83664 83664 1 LVPVTPGR Unmodified 837.50724 0.50723743 2384 Q92989;Q92989-2 CLP1 Polyribonucleotide 5'-hydroxyl-kinase Clp1 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 39.343 39.719 2 0.0083245 9439 20211116_3447_TMUAki_TMT10x_S_F8 86.872 43.958 4817600 7914400 21369 8001000 6077500 6064900 5776300 5419400 5528600 5449200 6705000 4485700 7385300 420860 8127300 5820000 6283400 5867200 5543500 5677000 5320800 6431700 5 5 2 5 5 5 5 5 5 5 5 1274600 2021900 12229 2020300 2488800 2813700 1763200 1455500 1459500 1413100 1736500 1186900 1886700 134080 2073000 2368900 2786900 1817000 1547100 1508000 1381900 1666600 1 1 1 1 1 1 1 1 1 1 1 3543000 5892500 9139.6 5980700 3588600 3251200 4013100 3963900 4069000 4036100 4968500 3298800 5498600 286780 6054200 3451100 3496500 4050200 3996400 4169000 3938900 4765100 4 4 1 4 4 4 4 4 4 4 4 113040000 59565000 53472000 13065 2384 12145 69177;69178;69179 83665;83666;83667;83668;83669 83669 5 LVQAFQFTDK Unmodified 1195.6237 0.62372375 1533 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.89 2.44 4 1 2 2 4 4 11 11 17 67.413 67.492 2;3 1.6197E-33 23231 20211116_3439_TMUAki_TMT10x_S_F1 285.63 202.96 333280000 522580000 3644500 606420000 394420000 484830000 325600000 343070000 355450000 339350000 421680000 310330000 487940000 30045000 610910000 376560000 498220000 334800000 355850000 362650000 331580000 404730000 26 26 12 26 26 26 26 26 26 26 26 154370000 240490000 866520 280600000 211470000 319340000 150400000 154840000 156370000 154620000 188880000 143730000 224550000 13844000 284000000 201250000 319230000 155930000 165730000 159970000 151020000 181200000 14 14 6 14 14 14 14 14 14 14 14 178910000 282090000 2777900 325830000 182950000 165490000 175210000 188230000 199080000 184730000 232800000 166590000 263380000 16202000 326910000 175310000 178990000 178860000 190120000 202680000 180560000 223530000 12 12 6 12 12 12 12 12 12 12 12 103450000000 60724000000 42721000000 13066 1533 12146 69180;69181;69182;69183;69184;69185;69186;69187;69188;69189;69190;69191;69192;69193;69194;69195;69196;69197;69198;69199;69200;69201;69202;69203;69204;69205;69206;69207 83670;83671;83672;83673;83674;83675;83676;83677;83678;83679;83680;83681;83682;83683;83684;83685;83686;83687;83688;83689;83690;83691;83692;83693;83694;83695;83696;83697;83698;83699;83700;83701;83702;83703;83704 83687 35 LVQDVANNTNEEAGDGTTTATVLAR Unmodified 2559.2413 0.2412525 613 P10809;P10809-2 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 2.83 1.24 4 6 5 6 2 11 12 57.913 57.774 2;3;4 4.263E-174 19206 20211116_3430_TMUAki_TMT10x_P_F3 399.58 377.94 65536000 108550000 663520 111560000 74234000 100710000 66355000 89436000 91991000 82677000 94508000 61023000 101300000 4918200 113430000 71004000 103010000 68512000 91299000 92552000 81025000 91091000 38 38 16 38 38 38 38 38 38 38 38 32931000 48575000 225420 51799000 45360000 71914000 40686000 44028000 43059000 38164000 44872000 30663000 45337000 2344500 52916000 43383000 71393000 41587000 45996000 43766000 37515000 43231000 20 20 7 20 20 20 20 20 20 20 20 32605000 59974000 438100 59759000 28874000 28799000 25669000 45408000 48932000 44512000 49636000 30360000 55962000 2573700 60517000 27621000 31621000 26925000 45303000 48787000 43510000 47860000 18 18 9 18 18 18 18 18 18 18 18 99769000000 62377000000 37392000000 13067 613 12147 69208;69209;69210;69211;69212;69213;69214;69215;69216;69217;69218;69219;69220;69221;69222;69223;69224;69225;69226;69227;69228;69229;69230 83705;83706;83707;83708;83709;83710;83711;83712;83713;83714;83715;83716;83717;83718;83719;83720;83721;83722;83723;83724;83725;83726;83727;83728;83729;83730;83731;83732;83733;83734;83735;83736;83737;83738;83739;83740;83741;83742 83717 38 LVQEALEAVPR Unmodified 1223.6874 0.68738664 1781 Q15269 PWP2 Periodic tryptophan protein 2 homolog yes yes 0 0 0 0 By MS/MS 4 0 1 1 67.661 67.743 2 2.5974E-07 21653 20211116_3431_TMUAki_TMT10x_P_F4 117.14 94.306 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13068 1781 12148 69231 83743 83743 1 LVQEQGSHSK Unmodified 1111.5622 0.56218613 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS 4 0 1 1 28.476 28.52 3 0.00010344 5819 20211116_3431_TMUAki_TMT10x_P_F4 115.14 79.177 176140 274260 6227.9 259290 193880 279710 183740 138790 156900 129950 202470 164050 255850 20656 265880 186020 280530 186070 147960 162410 127280 193910 1 1 1 1 1 1 1 1 1 1 1 176140 274260 6227.9 259290 193880 279710 183740 138790 156900 129950 202470 164050 255850 20656 265880 186020 280530 186070 147960 162410 127280 193910 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14806000 14806000 0 13069 935 12149 69232 83744 83744 1 LVQIASR Unmodified 785.47594 0.4759373 1874 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 6 2.92 1 1 2 2 2 38.372 38.632 2 0.0045012 8836 20211116_3447_TMUAki_TMT10x_S_F8 113.14 46.998 3532900 5988600 13961 6234500 4534100 4190800 4133300 4496900 4300400 4143000 4991300 3289500 5588900 306760 6312300 4337400 4402300 4218800 4546100 4392100 4060800 4793500 3 3 1 3 3 3 3 3 3 3 3 816500 1306100 0 1277200 1395400 1619200 1000800 885360 866970 847620 1034800 760220 1218600 73657 1310100 1327900 1612000 1031600 936080 893800 829390 993040 1 1 0 1 1 1 1 1 1 1 1 2716400 4682500 13961 4957300 3138700 2571600 3132600 3611500 3433400 3295300 3956500 2529300 4370300 233110 5002200 3009500 2790300 3187100 3610000 3498300 3231400 3800500 2 2 1 2 2 2 2 2 2 2 2 191280000 93490000 97790000 13070 1874 12150 69233;69234;69235;69236 83745;83746;83747 83747 3 LVQIEYALAAVAGGAPSVGIK Unmodified 2026.1463 0.14627689 807 P25787 PSMA2 Proteasome subunit alpha type-2 yes yes 0 0 0 0 By MS/MS By MS/MS 3.09 0.793 3 4 4 6 5 81.914 81.898 3;4 1.3106E-20 28991 20211116_3430_TMUAki_TMT10x_P_F3 159.74 147.12 14391000 21746000 125070 19899000 12251000 17654000 14809000 10061000 12156000 12952000 15102000 13399000 20285000 1166200 20397000 11811000 17953000 14805000 10699000 12587000 12530000 14477000 9 9 3 9 9 9 9 9 9 9 9 6875100 9876800 49632 8949500 5149700 10252000 6118000 4785600 5948700 6066600 7053600 6401500 9212600 560400 9214900 4963000 10241000 6149800 5179900 6098400 5872200 6770100 4 4 2 4 4 4 4 4 4 4 4 7515700 11870000 75434 10950000 7101300 7401800 8690900 5275500 6207100 6885100 8048500 6997700 11072000 605840 11182000 6848300 7711600 8655500 5519300 6488700 6658100 7707100 5 5 1 5 5 5 5 5 5 5 5 4200000000 2313000000 1887100000 13071 807 12151 69237;69238;69239;69240;69241;69242;69243;69244;69245;69246;69247 83748;83749;83750;83751;83752;83753;83754;83755;83756 83750 9 LVQILHR Unmodified 877.54977 0.54977095 1175 P52306;P52306-4;P52306-5;P52306-6;P52306-2;P52306-3 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 yes no 0 0 0 0 By MS/MS 2 0 1 1 41.016 41.072 3 0.0029621 10591 20211116_3440_TMUAki_TMT10x_S_F2 101.72 15.601 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13072 1175 12152 69248 83757 83757 1 LVQIPHFK Unmodified 980.58074 0.58073672 319 O75312 ZPR1 Zinc finger protein ZPR1 yes yes 0 0 0 0 By MS/MS 2 0 1 1 55.101 54.852 3 0.022004 17567 20211116_3429_TMUAki_TMT10x_P_F2 62.2 33.113 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13073 319 12153 69249 83758 83758 1 LVQLILHEYK Unmodified 1254.7336 0.73360855 1233 P55039 DRG2 Developmentally-regulated GTP-binding protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 72.458 72.29 3 0.0032636 23345 20211116_3440_TMUAki_TMT10x_S_F2 69.721 49.391 3911300 6472700 0 6508400 4509800 6323700 4328400 3985600 3651700 4080800 4706200 3641300 6039800 268060 6634300 4315400 6401000 4379000 4173200 3782000 3981600 4507300 2 2 0 2 2 2 2 2 2 2 2 2286900 3687500 0 3730000 2778500 4657700 2717400 2219400 2123700 2374400 2759700 2129100 3441000 167420 3816100 2660800 4632900 2741200 2384200 2209100 2312600 2642500 1 1 0 1 1 1 1 1 1 1 1 1624400 2785200 0 2778300 1731200 1666000 1610900 1766200 1527900 1706400 1946500 1512200 2598900 100640 2818200 1654600 1768100 1637700 1788900 1572900 1669000 1864800 1 1 0 1 1 1 1 1 1 1 1 343310000 185510000 157790000 13074 1233 12154 69250;69251 83759;83760 83760 2 LVQRPVIHPLSSPSNR Unmodified 1799.0166 0.016600123 21 A6NHX0 GATSL2 GATS-like protein 2 yes yes 0 0 0 1 By MS/MS 5 0 1 1 34.655 34.833 4 0.00079591 7453 20211116_3444_TMUAki_TMT10x_S_F5 69.403 50.623 210190 338920 2306.2 372820 197900 164060 194090 186880 207040 191930 268620 195720 316380 19403 374820 189800 180520 197470 189000 212250 187240 257220 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 210190 338920 2306.2 372820 197900 164060 194090 186880 207040 191930 268620 195720 316380 19403 374820 189800 180520 197470 189000 212250 187240 257220 1 1 1 1 1 1 1 1 1 1 1 20411000 0 20411000 13075 21 12155 69252 83761 83761 1 LVQSPNSYFMDVK Oxidation (M) 1542.7388 0.73882986 1015 P42677;Q71UM5 RPS27;RPS27L 40S ribosomal protein S27;40S ribosomal protein S27-like yes no 0 0 1 0 By MS/MS By MS/MS 6.9 0.831 4 3 3 4 6 62.456 62.663 2;3 0.000427 19083 20211116_3445_TMUAki_TMT10x_S_F6 89.9 67.814 110070000 191540000 906950 193840000 105390000 113310000 95405000 109100000 91810000 108560000 143090000 102490000 178730000 9587300 196380000 100840000 120310000 97184000 111120000 95377000 106050000 136440000 11 11 5 11 11 11 11 11 11 11 11 19926000 34036000 0 31514000 34992000 50345000 30316000 25129000 23136000 23865000 26104000 18551000 31750000 1623900 32609000 33419000 49560000 30773000 26784000 23956000 23360000 25090000 5 5 0 5 5 5 5 5 5 5 5 90147000 157500000 906950 162320000 70397000 62970000 65089000 83969000 68674000 84695000 116980000 83941000 146980000 7963400 163770000 67416000 70750000 66411000 84336000 71421000 82688000 111350000 6 6 5 6 6 6 6 6 6 6 6 11707000000 5626000000 6080700000 13076 1015 12156 69253;69254;69255;69256;69257;69258;69259;69260;69261;69262 83762;83763;83764;83765;83766;83767;83768;83769;83770;83771;83772 83768 1307 11 LVQSPNSYFMDVK Unmodified 1526.7439 0.74391524 1015 P42677;Q71UM5 RPS27;RPS27L 40S ribosomal protein S27;40S ribosomal protein S27-like yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 4 4 4 4 68.026 68.244 2;3 1.6936E-22 21024 20211116_3447_TMUAki_TMT10x_S_F8 206.69 151.71 89982000 150760000 941240 156170000 105360000 104500000 99273000 46387000 34495000 53961000 92101000 83789000 140690000 8552700 158160000 100930000 108340000 99010000 50323000 39972000 52389000 87063000 10 10 10 10 10 10 10 10 10 10 10 48577000 79651000 589730 82829000 62596000 76599000 63675000 25634000 19828000 29840000 47386000 45234000 74335000 4773300 84181000 60083000 77273000 63174000 28761000 23068000 28971000 44858000 5 5 5 5 5 5 5 5 5 5 5 41405000 71104000 351510 73339000 42768000 27902000 35599000 20753000 14668000 24121000 44715000 38555000 66356000 3779400 73981000 40849000 31066000 35836000 21562000 16904000 23419000 42205000 5 5 5 5 5 5 5 5 5 5 5 9475100000 5433300000 4041900000 13077 1015 12156 69263;69264;69265;69266;69267;69268;69269;69270 83773;83774;83775;83776;83777;83778;83779;83780;83781;83782 83781 10 LVQTAELTK Unmodified 1001.5757 0.57571092 1283 P60983;O60234 GMFB;GMFG Glia maturation factor beta;Glia maturation factor gamma yes no 0 0 0 0 By MS/MS 5 0 1 1 49.456 49.644 2 0.0022972 14497 20211116_3433_TMUAki_TMT10x_P_F5 82.008 41.91 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13078 1283 12157 69271 83783 83783 1 LVQTPLTDR Unmodified 1041.5819 0.58185893 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS By matching 5 0 2 1 1 45.318 45.466 2 0.03718 12839 20211116_3433_TMUAki_TMT10x_P_F5 58.433 8.3137 2284200 3917200 65353 4514100 5295700 5903800 3444100 3664600 3631000 2930300 3514100 2127300 3657400 292460 4583800 5035200 5878400 3596100 3817000 3681600 2892100 3393500 1 1 1 1 1 1 1 1 1 1 1 2284200 3917200 65353 4514100 5295700 5903800 3444100 3664600 3631000 2930300 3514100 2127300 3657400 292460 4583800 5035200 5878400 3596100 3817000 3681600 2892100 3393500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 131010000 93648000 37360000 13079 1695 12158 69272;69273 83784 83784 1 LVRFPEDLENDIR Unmodified 1614.8366 0.83657007 142 O14929 HAT1 Histone acetyltransferase type B catalytic subunit yes yes 0 0 0 1 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 62.519 62.235 3 4.7855E-09 19895 20211116_3442_TMUAki_TMT10x_S_F4 124.62 98.503 8629900 13973000 108410 14808000 9337500 10505000 9662400 8716800 8136500 8834800 10176000 8036000 13041000 817100 14984000 8967300 10927000 9736800 8956400 8416700 8623700 9753300 4 4 3 4 4 4 4 4 4 4 4 3123100 4724700 18858 5102700 3216000 4864300 3526300 2469900 2354000 2512600 3196900 2908000 4410100 277800 5175300 3092600 4916300 3524400 2633400 2476000 2452200 3057800 1 1 1 1 1 1 1 1 1 1 1 5506800 9247900 89556 9705700 6121400 5641000 6136100 6246800 5782500 6322300 6979200 5128000 8631000 539300 9808300 5874700 6011000 6212400 6323000 5940600 6171500 6695500 3 3 2 3 3 3 3 3 3 3 3 912960000 268850000 644110000 13080 142 12159 69274;69275;69276 83785;83786;83787;83788 83787 4 LVRPPVQVYGIEGR Unmodified 1581.8991 0.89911075 1068 P48047 ATP5O ATP synthase subunit O, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 2.69 2 2 2 2 4 4 51.013 50.848 3 1.635E-26 14303 20211116_3428_TMUAki_TMT10x_P_F1 198.81 179.49 16828000 28014000 158020 29499000 22384000 24092000 17714000 22722000 22330000 20312000 23186000 15669000 26145000 1527400 29908000 21349000 24846000 18355000 23099000 22545000 19937000 22341000 8 8 5 8 8 8 8 8 8 8 8 6820600 10682000 3068.5 11305000 11967000 15098000 8951000 9555800 9226000 8394200 9273400 6350400 9969400 602100 11546000 11396000 15022000 9245600 9960600 9375500 8246100 8944300 3 3 1 3 3 3 3 3 3 3 3 10007000 17332000 154950 18194000 10417000 8994500 8763000 13166000 13104000 11918000 13913000 9318200 16176000 925300 18362000 9952400 9824200 9109600 13139000 13170000 11691000 13396000 5 5 4 5 5 5 5 5 5 5 5 4613200000 2758400000 1854800000 13081 1068 12160 69277;69278;69279;69280;69281;69282;69283;69284 83789;83790;83791;83792;83793;83794;83795;83796;83797 83789 9 LVSDEMVVELIEK Oxidation (M) 1518.7851 0.78511135 1228 P54819;P54819-5;P54819-2;P54819-6;P54819-3;P54819-4 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 0 0 1 0 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 77.736 77.709 2 1.2262E-05 25364 20211116_3428_TMUAki_TMT10x_P_F1 106.29 72.33 5807300 9878700 172010 9062500 6576500 10489000 7552600 7955500 8435200 8738600 7676100 5408500 9214800 652550 9324200 6340800 10541000 7637200 8239900 8515800 8502300 7428300 2 2 2 2 2 2 2 2 2 2 2 3326400 5663700 113060 5057500 3321600 7330200 4275500 4621400 4933900 5094800 4080900 3098100 5282600 381090 5236300 3215700 7266500 4307400 4849600 4960400 4956400 3963100 1 1 1 1 1 1 1 1 1 1 1 2480900 4215000 58949 4005000 3254900 3158700 3277000 3334100 3501200 3643700 3595200 2310400 3932200 271460 4087900 3125100 3274000 3329800 3390300 3555400 3545900 3465200 1 1 1 1 1 1 1 1 1 1 1 838220000 545050000 293180000 13082 1228 12161 69285;69286;69287 83798;83799;83800 83798 1647 3 LVSDEMVVELIEK Unmodified 1502.7902 0.79019673 1228 P54819;P54819-5;P54819-2;P54819-6;P54819-3;P54819-4 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 0 0 0 0 By MS/MS 1 0 1 1 80.089 80.089 2 2.4062E-22 26327 20211116_3428_TMUAki_TMT10x_P_F1 201.6 131.5 4114300 6472600 68584 6310100 4060300 5845400 4922200 2174300 1680900 2743700 4268100 3831400 6039000 404270 6441900 3919000 5901100 4847400 2413000 1943700 2656100 4037200 1 1 1 1 1 1 1 1 1 1 1 4114300 6472600 68584 6310100 4060300 5845400 4922200 2174300 1680900 2743700 4268100 3831400 6039000 404270 6441900 3919000 5901100 4847400 2413000 1943700 2656100 4037200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 725450000 725450000 0 13083 1228 12161 69288 83801 83801 1 LVSDGQALPEMEIHLQTNAEK Oxidation (M) 2338.1475 0.14747546 1578 Q12931;Q12931-2 TRAP1 Heat shock protein 75 kDa, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 1 4 55.307 55.378 3 3.8608E-17 15715 20211116_3444_TMUAki_TMT10x_S_F5 130.73 119.79 7662200 12189000 1690.2 14857000 9242800 12312000 7464500 10158000 11668000 9935100 10248000 7134100 11384000 630040 14930000 8816000 12651000 7794700 10430000 11636000 9712400 9930100 4 4 1 4 4 4 4 4 4 4 4 4215100 6513400 1690.2 7932800 6605700 9470000 4720900 5411000 6335900 5491200 5325600 3924500 6083000 371360 8015500 6285700 9461400 4937100 5708800 6339100 5359700 5168700 2 2 1 2 2 2 2 2 2 2 2 3447200 5675700 0 6924600 2637100 2841500 2743600 4747300 5332600 4443900 4922700 3209500 5300700 258690 6915000 2530200 3189500 2857500 4721500 5297100 4352700 4761400 2 2 0 2 2 2 2 2 2 2 2 1524400000 838630000 685770000 13084 1578 12162 69289;69290;69291;69292;69293 83802;83803;83804;83805;83806;83807;83808 83807 2139 7 LVSGWVKPIIIGR Unmodified 1436.8868 0.88675515 364 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 69.2 69.383 3 6.1177E-20 23251 20211116_3435_TMUAki_TMT10x_P_F7 164.53 141.52 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13085 364 12163 69294;69295;69296;69297 83809;83810;83811;83812 83809 4 LVSIGAEEIVDGNAK Unmodified 1513.7988 0.79878758 235 O43707 ACTN4 Alpha-actinin-4 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 66.708 66.246 3 3.02E-10 22756 20211116_3430_TMUAki_TMT10x_P_F3 119.79 104.82 1638700 2727400 0 2630100 2048100 1703800 1845900 2099000 1878200 1890300 2261000 1525700 2544600 134690 2676100 1958300 1801800 1884000 2108000 1922900 1854800 2169300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1638700 2727400 0 2630100 2048100 1703800 1845900 2099000 1878200 1890300 2261000 1525700 2544600 134690 2676100 1958300 1801800 1884000 2108000 1922900 1854800 2169300 1 1 0 1 1 1 1 1 1 1 1 332560000 0 332560000 13086 235 12164 69298;69299;69300 83813;83814;83815 83814 3 LVSLYFDTK Unmodified 1084.5805 0.58046195 73 O00231;O00231-2 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 1 1 1 1 72.567 72.613 2 2.0772E-05 25291 20211116_3439_TMUAki_TMT10x_S_F1 145.17 112.33 6151100 10021000 93604 10032000 6104800 10923000 6510500 6096400 5664900 6149200 6995300 5728000 9351200 596560 10247000 5869400 10964000 6556400 6443500 5847300 6003500 6707000 1 1 1 1 1 1 1 1 1 1 1 6151100 10021000 93604 10032000 6104800 10923000 6510500 6096400 5664900 6149200 6995300 5728000 9351200 596560 10247000 5869400 10964000 6556400 6443500 5847300 6003500 6707000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 314950000 314950000 0 13087 73 12165 69301;69302 83816;83817 83817 2 LVSLYFDTKR Unmodified 1240.6816 0.68157298 73 O00231;O00231-2 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 3 1 60.564 60.375 3 7.9933E-08 20349 20211116_3430_TMUAki_TMT10x_P_F3 119.34 95.586 3672600 6355700 17109 6174200 3909500 4492600 4110400 4165500 4101200 4514800 4372500 3419700 5929900 323750 6286400 3754700 4673100 4158600 4262100 4182300 4395000 4209600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3672600 6355700 17109 6174200 3909500 4492600 4110400 4165500 4101200 4514800 4372500 3419700 5929900 323750 6286400 3754700 4673100 4158600 4262100 4182300 4395000 4209600 1 1 1 1 1 1 1 1 1 1 1 985020000 515340000 469680000 13088 73 12166 69303;69304;69305;69306 83818;83819;83820 83818 3 LVSPGSANETSSILVESVTR Unmodified 2045.0641 0.064063405 328 O75369;O75369-8;O75369-6;O75369-3;O75369-2;O75369-9;O75369-7 FLNB Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 68.53 68.474 3 3.8776E-18 21407 20211116_3445_TMUAki_TMT10x_S_F6 142.97 130.03 3325900 6378800 53035 5837800 4170400 5614200 4402700 4539200 4758300 4758200 4852400 3097100 5950100 336990 5990400 4007800 5709000 4464700 4675900 4828500 4638100 4678000 2 2 2 2 2 2 2 2 2 2 2 1564400 2888900 28686 2523500 1884700 3629500 2011200 2414500 2223500 2112900 2131900 1456800 2694200 160920 2616800 1812000 3602000 2040000 2507200 2249500 2076000 2059400 1 1 1 1 1 1 1 1 1 1 1 1761500 3489900 24350 3314300 2285700 1984700 2391500 2124700 2534700 2645300 2720400 1640300 3255800 176070 3373700 2195800 2107000 2424700 2168700 2579000 2562100 2618600 1 1 1 1 1 1 1 1 1 1 1 921360000 593600000 327760000 13089 328 12167 69307;69308 83821;83822 83822 2 LVSQDNFGFDLPAVEAATK Unmodified 2021.0106 0.010571271 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 6 0.707 1 2 1 2 2 78.75 78.756 3 3.3114E-12 27769 20211116_3446_TMUAki_TMT10x_S_F7 122.57 106.26 20701000 33630000 97184 32247000 22854000 28846000 25484000 18767000 16404000 19032000 24759000 19274000 31375000 1728400 32944000 21978000 29370000 25431000 19597000 17382000 18577000 23625000 4 4 2 4 4 4 4 4 4 4 4 11277000 17463000 0 17444000 10191000 19292000 12780000 9530400 8836700 10444000 13479000 10499000 16295000 811230 17825000 9829700 19320000 12706000 10210000 9327100 10162000 12859000 2 2 0 2 2 2 2 2 2 2 2 9423500 16167000 97184 14803000 12663000 9554200 12704000 9236300 7567200 8588400 11280000 8775000 15080000 917220 15119000 12149000 10050000 12725000 9387500 8054900 8414600 10767000 2 2 2 2 2 2 2 2 2 2 2 4478700000 1551400000 2927300000 13090 1475 12168 69309;69310;69311;69312 83823;83824;83825;83826 83826 4 LVSQKPK Unmodified 798.49634 0.49633839 666 P14314;P14314-2 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 1 By MS/MS 2 0 1 1 33.011 32.789 3 0.067171 8606 20211116_3429_TMUAki_TMT10x_P_F2 51.059 25.322 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13091 666 12169 69313 83827 83827 1 LVSQTGPVHAPIFTMSVEVDGNSFEASGPSK Oxidation (M) 3203.5445 0.54449374 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 1 0 By matching By MS/MS 6.5 0.5 1 1 1 1 67.849 68.008 4 3.3478E-10 23258 20211116_3446_TMUAki_TMT10x_S_F7 84.641 77.688 1953200 3533300 0 3226400 2583000 2638800 2357000 2501800 2312700 2276300 3036100 1818300 3295800 132200 3304300 2468500 2721400 2401200 2543800 2380400 2232500 2906400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1953200 3533300 0 3226400 2583000 2638800 2357000 2501800 2312700 2276300 3036100 1818300 3295800 132200 3304300 2468500 2721400 2401200 2543800 2380400 2232500 2906400 1 1 0 1 1 1 1 1 1 1 1 1562400000 835550000 726840000 13092 1576 12170 69314;69315 83828 83828 2132 1 LVSQTGPVHAPIFTMSVEVDGNSFEASGPSKK Oxidation (M) 3331.6395 0.63945675 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 1 1 By MS/MS By MS/MS 7.33 0.745 1 2 3 3 3 61.961 62.196 4;5 9.029E-36 18507 20211116_3447_TMUAki_TMT10x_S_F8 168.69 150.78 17240000 31774000 151010 24454000 20223000 35349000 21533000 31010000 30499000 31903000 26828000 16053000 29621000 1017300 25627000 19431000 35241000 22051000 31774000 30505000 31121000 25994000 4 4 1 4 4 4 4 4 4 4 4 6767900 10312000 0 8697000 6781300 16880000 8750400 11203000 9326800 10694000 8691000 6301600 9615800 0 9108800 6551700 16564000 8790800 11662000 9440700 10465000 8403500 2 2 0 2 2 2 2 2 2 2 2 10472000 21462000 151010 15757000 13442000 18468000 12783000 19807000 21173000 21209000 18137000 9751100 20005000 1017300 16518000 12879000 18677000 13260000 20113000 21065000 20656000 17590000 2 2 1 2 2 2 2 2 2 2 2 17460000000 6612700000 10847000000 13093 1576 12171 69316;69317;69318;69319;69320;69321 83829;83830;83831;83832 83832 2132 4 LVSQTGPVHAPIFTMSVEVDGNSFEASGPSKK Unmodified 3315.6445 0.64454213 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 1 By MS/MS 8 0 1 1 68.639 68.74 4 0.0019778 21762 20211116_3436_TMUAki_TMT10x_P_F8 47.319 41.599 4054900 6583100 36941 6892200 4270200 5804200 5001300 2101200 1866700 2464200 4111400 3775800 6143900 373620 6993100 4115100 5896800 4937800 2334100 2115900 2391700 3896700 1 1 1 1 1 1 1 1 1 1 1 4054900 6583100 36941 6892200 4270200 5804200 5001300 2101200 1866700 2464200 4111400 3775800 6143900 373620 6993100 4115100 5896800 4937800 2334100 2115900 2391700 3896700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 625140000 625140000 0 13094 1576 12171 69322 83833 83833 1 LVSSDPEINTK Unmodified 1201.619 0.6190323 3226 Q9Y266 NUDC Nuclear migration protein nudC yes yes 0 0 0 0 By MS/MS 4 0 2 2 45.2 45.402 2;3 0.0020983 12917 20211116_3442_TMUAki_TMT10x_S_F4 80.24 43.683 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13095 3226 12172 69323;69324 83834;83835 83835 2 LVSSPCCIVTSTYGWTANMER Oxidation (M) 2447.092 0.091951189 553 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 1 0 By MS/MS By MS/MS 4.12 3.2 9 6 2 9 12 14 71.286 71.233 2;3 2.7578E-19 22778 20211116_3439_TMUAki_TMT10x_S_F1 145.48 136.88 108320000 181500000 1486000 179940000 121420000 144630000 130160000 91404000 79836000 98108000 128280000 100860000 169360000 9321300 183150000 116680000 148320000 130010000 95820000 85141000 95541000 122250000 53 53 29 53 53 53 53 53 53 53 53 51991000 82916000 733340 83094000 52203000 84061000 59578000 40653000 35700000 43794000 58680000 48411000 77370000 4257300 84771000 50259000 84600000 59308000 43618000 38179000 42642000 55895000 22 22 11 22 22 22 22 22 22 22 22 56328000 98589000 752650 96848000 69216000 60566000 70583000 50751000 44136000 54314000 69600000 52449000 91987000 5064000 98381000 66420000 63718000 70705000 52202000 46962000 52900000 66353000 31 31 18 31 31 31 31 31 31 31 31 71406000000 37159000000 34247000000 13096 553 12173 69325;69326;69327;69328;69329;69330;69331;69332;69333;69334;69335;69336;69337;69338;69339;69340;69341;69342;69343;69344;69345;69346;69347;69348;69349;69350 83836;83837;83838;83839;83840;83841;83842;83843;83844;83845;83846;83847;83848;83849;83850;83851;83852;83853;83854;83855;83856;83857;83858;83859;83860;83861;83862;83863;83864;83865;83866;83867;83868;83869;83870;83871;83872;83873;83874;83875;83876;83877;83878;83879;83880;83881;83882;83883;83884;83885;83886;83887;83888;83889 83858 510 54 LVSSPCCIVTSTYGWTANMER Unmodified 2431.097 0.097036567 553 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 0 By MS/MS By MS/MS 3.35 2.3 4 6 7 2 4 5 18 73.433 73.398 2;3 2.7606E-76 26932 20211116_3439_TMUAki_TMT10x_S_F1 274.44 267.4 32700000 54391000 144290 55764000 40014000 32901000 41409000 20639000 19479000 22298000 35226000 30445000 50758000 2379700 56450000 38391000 34652000 41251000 21653000 21335000 21709000 33493000 24 24 9 24 24 24 24 24 24 24 24 9389000 14704000 73422 15339000 10168000 12786000 12570000 5434200 4869100 5556300 9426900 8742000 13723000 770950 15565000 9808600 13017000 12387000 5899800 5452300 5421500 8952700 4 4 1 4 4 4 4 4 4 4 4 23311000 39687000 70866 40425000 29846000 20115000 28839000 15205000 14609000 16742000 25799000 21703000 37035000 1608800 40885000 28582000 21635000 28864000 15753000 15882000 16288000 24541000 20 20 8 20 20 20 20 20 20 20 20 42608000000 20867000000 21741000000 13097 553 12173 69351;69352;69353;69354;69355;69356;69357;69358;69359;69360;69361;69362;69363;69364;69365;69366;69367;69368;69369;69370;69371;69372;69373 83890;83891;83892;83893;83894;83895;83896;83897;83898;83899;83900;83901;83902;83903;83904;83905;83906;83907;83908;83909;83910;83911;83912;83913;83914;83915;83916;83917;83918 83895 29 LVTDLTK Unmodified 788.46437 0.46436956 38 CON__P02769;P02768;CON__P02768-1;P02768-2 ALB Serum albumin yes no 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 51.176 51.373 2 0.0049277 15173 20211116_3433_TMUAki_TMT10x_P_F5 111.01 29.049 + 4272400 5852900 117180 5295400 9098500 9245600 6938300 8684400 9744900 7246200 6611500 3978900 5459300 531010 5500600 8676800 9162600 7237600 8814900 9679700 7136300 6474900 1 1 1 1 1 1 1 1 1 1 1 4272400 5852900 117180 5295400 9098500 9245600 6938300 8684400 9744900 7246200 6611500 3978900 5459300 531010 5500600 8676800 9162600 7237600 8814900 9679700 7136300 6474900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 380600000 380600000 0 13098 38 12174 69374;69375;69376 83919;83920;83921 83919 3 LVTEMGTYATQSALSSSRPTK Oxidation (M) 2243.1104 0.11036167 1206 P53618 COPB1 Coatomer subunit beta yes yes 0 0 1 1 By MS/MS By MS/MS 8 0 4 2 2 46.076 46.11 3;4 5.1626E-56 12526 20211116_3436_TMUAki_TMT10x_P_F8 236.27 217.02 6157200 10561000 80356 12583000 12688000 14327000 8201500 11990000 11460000 11320000 9172300 5733600 9862200 676840 12720000 12058000 14435000 8654700 12288000 11435000 11083000 8919000 5 5 5 5 5 5 5 5 5 5 5 4726900 8087300 62061 9780400 11415000 13123000 7078600 9552700 9110100 9201200 7021700 4401600 7552600 543390 9908000 10840000 13082000 7469700 9882200 9104900 9000900 6838200 3 3 3 3 3 3 3 3 3 3 3 1430400 2473900 18295 2803000 1273700 1204000 1122900 2437300 2350300 2118300 2150700 1331900 2309600 133440 2812400 1218600 1352900 1184900 2406200 2330300 2082000 2080800 2 2 2 2 2 2 2 2 2 2 2 990570000 805280000 185290000 13099 1206 12175 69377;69378;69379;69380 83922;83923;83924;83925;83926 83924 1617 5 LVTEMGTYATQSALSSSRPTKK Oxidation (M) 2371.2053 0.20532469 1206 P53618 COPB1 Coatomer subunit beta yes yes 0 0 1 2 By MS/MS By MS/MS 2 0 2 1 1 42.703 42.578 5 3.7188E-14 12594 20211116_3429_TMUAki_TMT10x_P_F2 131.54 117.91 5140500 8237000 103960 9460400 10528000 11460000 6700400 8130300 8656300 7270500 7827700 4787100 7690600 598110 9594700 10005000 11477000 7057200 8408600 8691300 7136200 7576800 4 4 3 4 4 4 4 4 4 4 4 4329400 6879300 103960 7790200 9718000 10843000 6105500 6716900 7287500 6021700 6420600 4031800 6422500 531290 7928600 9233500 10765000 6418600 7016700 7331300 5909800 6220500 3 3 3 3 3 3 3 3 3 3 3 811170 1357700 0 1670300 810350 617520 594870 1413400 1368800 1248800 1407100 755270 1268100 66817 1666100 771550 711910 638630 1391900 1360000 1226400 1356200 1 1 0 1 1 1 1 1 1 1 1 327910000 255350000 72553000 13100 1206 12176 69381;69382 83927;83928;83929;83930 83929 1617 4 LVTGGGEEVDVHSLGAR Unmodified 1694.8588 0.85876208 1970 Q6DKJ4 NXN Nucleoredoxin yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 45.438 45.368 3 4.875E-11 12925 20211116_3442_TMUAki_TMT10x_S_F4 129.05 113.19 717720 1280500 26872 1603000 734760 577370 629990 854940 860520 700680 1120100 668470 1196000 84786 1597300 703520 657690 651640 850620 874560 690680 1072500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 717720 1280500 26872 1603000 734760 577370 629990 854940 860520 700680 1120100 668470 1196000 84786 1597300 703520 657690 651640 850620 874560 690680 1072500 1 1 1 1 1 1 1 1 1 1 1 237080000 0 237080000 13101 1970 12177 69383;69384;69385;69386 83931;83932;83933 83933 3 LVTLPVSFAQLK Unmodified 1314.7911 0.79112343 2409 Q96AG4 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 78.736 78.733 3 5.1167E-16 26172 20211116_3431_TMUAki_TMT10x_P_F4 172.8 151.34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13102 2409 12178 69387;69388;69389 83934;83935;83936 83934 3 LVTPEDDELDELRPGQR Unmodified 1980.9752 0.9752484 1551 Q08AM6 VAC14 Protein VAC14 homolog yes yes 0 0 0 1 By matching By MS/MS 2.5 0.5 1 1 1 1 54.452 54.138 3 2.3374E-15 18823 20211116_3441_TMUAki_TMT10x_S_F3 147.7 127.96 3117300 5181100 21933 6552000 2743500 2815100 2577500 4547800 4445600 4489700 4563000 2902700 4839600 273650 6531400 2627800 3137200 2681000 4534700 4445000 4387200 4398100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3117300 5181100 21933 6552000 2743500 2815100 2577500 4547800 4445600 4489700 4563000 2902700 4839600 273650 6531400 2627800 3137200 2681000 4534700 4445000 4387200 4398100 1 1 1 1 1 1 1 1 1 1 1 747300000 589790000 157510000 13103 1551 12179 69390;69391 83937 83937 1 LVTSIGDVVNHDPVVGDR Unmodified 1890.9799 0.97993984 620 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 61.18 61.176 3 7.256E-09 19443 20211116_3442_TMUAki_TMT10x_S_F4 118.48 104.4 7924600 12531000 36930 14642000 10664000 12653000 8869200 8171100 8189700 8461700 10226000 7378300 11700000 659100 14759000 10178000 12912000 9069200 8542700 8433700 8252200 9802000 2 2 1 2 2 2 2 2 2 2 2 4865700 7242800 0 8555600 7417600 9752200 5855100 4622800 4913500 5092300 6036100 4529900 6763200 368450 8653300 7068400 9745800 5991600 4973100 5079600 4954100 5788000 1 1 0 1 1 1 1 1 1 1 1 3058900 5287900 36930 6086500 3246600 2900400 3014100 3548300 3276300 3369400 4190300 2848400 4937100 290650 6105200 3109300 3165900 3077600 3569600 3354000 3298100 4013900 1 1 1 1 1 1 1 1 1 1 1 1001000000 727780000 273270000 13104 620 12180 69392;69393 83938;83939 83939 2 LVTSPCCIVTSTYGWTANMER Oxidation (M) 2461.1076 0.10760125 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 1 0 By MS/MS By MS/MS 2.8 2.64 4 4 2 5 5 72.495 72.389 2;3 8.6901E-11 24690 20211116_3429_TMUAki_TMT10x_P_F2 120.59 114.15 28207000 50177000 297590 42924000 33669000 45754000 36594000 29838000 26301000 30529000 37889000 26264000 46794000 2337300 44344000 32361000 46079000 36648000 31161000 27618000 29788000 36191000 19 19 7 19 19 19 19 19 19 19 19 14375000 24576000 59898 21280000 14308000 28162000 17212000 14240000 12664000 14037000 18543000 13385000 22920000 1010600 22045000 13790000 27952000 17166000 15175000 13291000 13717000 17705000 9 9 2 9 9 9 9 9 9 9 9 13832000 25601000 237690 21643000 19361000 17592000 19382000 15598000 13637000 16492000 19346000 12880000 23874000 1326700 22299000 18571000 18127000 19481000 15987000 14327000 16070000 18486000 10 10 5 10 10 10 10 10 10 10 10 28943000000 16588000000 12355000000 13105 544 12181 69394;69395;69396;69397;69398;69399;69400;69401;69402;69403 83940;83941;83942;83943;83944;83945;83946;83947;83948;83949;83950;83951;83952;83953;83954;83955;83956;83957;83958 83945 488 19 LVTSPCCIVTSTYGWTANMER Unmodified 2445.1127 0.11268663 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 By MS/MS By MS/MS 2.25 0.829 1 5 1 1 2 6 71.02 71 2;3 2.6951E-67 26709 20211116_3429_TMUAki_TMT10x_P_F2 239.75 225.33 15746000 27467000 80654 26634000 21848000 20721000 21853000 13544000 14408000 14701000 19874000 14661000 25627000 1381300 27142000 20949000 21313000 21936000 14167000 15178000 14310000 19002000 9 9 3 9 9 9 9 9 9 9 9 6297500 10057000 55179 9125800 7238000 10341000 8453100 5497400 5991700 5992900 7504200 5863800 9381200 562830 9393800 6972500 10351000 8434600 5848700 6257000 5832600 7192200 3 3 2 3 3 3 3 3 3 3 3 9448500 17410000 25475 17508000 14610000 10380000 13400000 8046400 8416500 8708100 12369000 8797200 16246000 818450 17748000 13976000 10962000 13501000 8318600 8920600 8477500 11810000 6 6 1 6 6 6 6 6 6 6 6 12762000000 6976900000 5784700000 13106 544 12181 69404;69405;69406;69407;69408;69409;69410;69411 83959;83960;83961;83962;83963;83964;83965;83966;83967;83968 83961 10 LVTTGVLK Unmodified 829.5273 0.52730417 534 P07305;P07305-2 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 4.14 3.09 2 2 1 2 4 3 51.833 51.829 2 0.00041049 16791 20211116_3439_TMUAki_TMT10x_S_F1 140.98 33.667 45603000 75634000 800920 74711000 79201000 93236000 57352000 80137000 77713000 68398000 71421000 42466000 70571000 4847300 76559000 75431000 93546000 59947000 81788000 77945000 67285000 69092000 7 7 5 7 7 7 7 7 7 7 7 27567000 44723000 311660 45459000 59670000 76216000 41311000 46347000 45875000 40579000 42341000 25670000 41734000 2982300 46784000 56769000 75076000 43004000 48458000 46345000 39869000 40955000 4 4 3 4 4 4 4 4 4 4 4 18036000 30911000 489260 29251000 19531000 17020000 16041000 33790000 31838000 27819000 29080000 16796000 28837000 1865000 29775000 18662000 18470000 16943000 33330000 31601000 27416000 28137000 3 3 2 3 3 3 3 3 3 3 3 3658900000 2512000000 1146900000 13107 534 12182 69412;69413;69414;69415;69416;69417;69418 83969;83970;83971;83972;83973;83974;83975 83973 7 LVTTVTEIAG Unmodified 1002.5597 0.55972651 1482 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 71.733 71.504 2 0.00051855 24322 20211116_3429_TMUAki_TMT10x_P_F2 105.95 73.726 33732000 50327000 1306900 54671000 40107000 41785000 36306000 29123000 28886000 28720000 37890000 31417000 46976000 3971300 55274000 38431000 43078000 36796000 30237000 30031000 28066000 36272000 7 7 5 7 7 7 7 7 7 7 7 10889000 15778000 413660 18452000 13568000 19961000 12181000 9575900 8704800 9932800 12687000 10141000 14733000 1240200 18658000 12995000 20008000 12321000 10271000 9149100 9686200 12116000 3 3 2 3 3 3 3 3 3 3 3 22844000 34549000 893200 36218000 26539000 21824000 24125000 19547000 20181000 18788000 25202000 21276000 32244000 2731100 36616000 25437000 23070000 24475000 19966000 20882000 18380000 24156000 4 4 3 4 4 4 4 4 4 4 4 2635100000 1083500000 1551600000 13108 1482 12183 69419;69420;69421;69422;69423;69424 83976;83977;83978;83979;83980;83981;83982;83983 83976 8 LVVADREEVEQEADNILK Unmodified 2069.0641 0.064063405 2793 Q9H2P9;Q9H2P9-3;Q9H2P9-2;Q9H2P9-4;Q9H2P9-5;Q9H2P9-6 DPH5 Diphthine synthase yes no 0 0 0 1 By MS/MS 2 0 1 1 68.159 67.956 3 0.059251 21633 20211116_3440_TMUAki_TMT10x_S_F2 40.381 21.306 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13109 2793 12184 69425 83984 83984 1 LVVADTR Unmodified 772.4443 0.44430282 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.11 1.79 1 1 1 2 2 1 1 5 4 33.287 33.295 2 0.00461 8432 20211116_3431_TMUAki_TMT10x_P_F4 112.59 41.878 9145300 14810000 26853 14449000 12768000 11540000 10722000 8425200 9166800 8003200 11517000 8515100 13818000 789220 14722000 12190000 11865000 10934000 8710700 9477100 7833700 11037000 7 7 4 7 7 7 7 7 7 7 7 4359900 6467900 6780.5 6599000 7191000 7569400 5109000 3904800 4317100 3643400 5183600 4059300 6035700 373830 6737300 6840900 7568900 5266600 4147200 4457300 3569100 4973600 3 3 1 3 3 3 3 3 3 3 3 4785400 8342400 20073 7849900 5577500 3970200 5612800 4520400 4849700 4359800 6333500 4455800 7782500 415400 7984900 5349300 4296300 5667800 4563500 5019800 4264600 6063800 4 4 3 4 4 4 4 4 4 4 4 460380000 252650000 207730000 13110 769 12185 69426;69427;69428;69429;69430;69431;69432;69433;69434 83985;83986;83987;83988;83989;83990;83991 83985 7 LVVDSHVQYR Unmodified 1214.6408 0.6407708 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 36.117 36.176 3 1.3535E-09 9179 20211116_3433_TMUAki_TMT10x_P_F5 179.09 132.76 6457100 9357900 175670 10750000 11035000 11340000 7158600 6892300 6500400 6772400 7612100 6013400 8737100 745160 10877000 10493000 11416000 7443500 7228500 6681300 6619200 7308700 4 4 3 4 4 4 4 4 4 4 4 5359300 7495300 135560 8874300 9841400 10301000 6157200 5464900 5132100 5464100 6044700 4990900 6999000 615420 8977100 9350800 10297000 6406400 5800400 5298300 5336600 5802800 3 3 2 3 3 3 3 3 3 3 3 1097800 1862600 40108 1875800 1193400 1039400 1001400 1427400 1368300 1308200 1567400 1022500 1738100 129730 1900200 1141800 1119200 1037100 1428100 1383100 1282600 1505900 1 1 1 1 1 1 1 1 1 1 1 843130000 711040000 132090000 13111 1997 12186 69435;69436;69437 83992;83993;83994;83995 83993 4 LVVGGLLSPEEDQSLLLSQFR Unmodified 2299.2424 0.24236212 2694 Q9BVI4 NOC4L Nucleolar complex protein 4 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 80.989 81 3 1.311E-44 28671 20211116_3446_TMUAki_TMT10x_S_F7 209.7 187.12 3508100 5599600 45659 7234600 3727500 4312700 4688400 2776000 2532700 3234200 4765300 3266600 5231200 326620 7221300 3600400 4539200 4638700 2913700 2750100 3139800 4527800 3 3 2 3 3 3 3 3 3 3 3 937790 1423000 23711 1654600 966560 1628700 1162000 846980 739570 914540 1176800 873350 1328700 100250 1671200 933130 1643200 1155400 902620 786390 890410 1121700 1 1 1 1 1 1 1 1 1 1 1 2570300 4176600 21947 5580000 2760900 2684000 3526400 1929000 1793100 2319700 3588400 2393300 3902500 226370 5550100 2667200 2895900 3483300 2011100 1963700 2249400 3406100 2 2 1 2 2 2 2 2 2 2 2 900230000 203870000 696350000 13112 2694 12187 69438;69439 83996;83997;83998 83997 3 LVVLGIRPIR Unmodified 1134.7601 0.76009807 2376 Q92900;Q92900-2 UPF1 Regulator of nonsense transcripts 1 yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 55.688 55.727 3 2.0472E-10 16447 20211116_3436_TMUAki_TMT10x_P_F8 174.02 154.26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13113 2376 12188 69440;69441 83999;84000 83999 2 LVVLGSGGVGK Unmodified 984.59678 0.59678072 1304 P61224;P61224-2;P61224-3;P62834;P61224-4 RAP1B;RAP1A Ras-related protein Rap-1b;Ras-related protein Rap-1A yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 56.354 56.122 2 1.4518E-18 18080 20211116_3429_TMUAki_TMT10x_P_F2 222.42 138.18 21254000 33922000 620000 35030000 31764000 31725000 23711000 26258000 26233000 24211000 28600000 19794000 31657000 2487100 35609000 30292000 32400000 24551000 26912000 26661000 23730000 27516000 4 4 4 4 4 4 4 4 4 4 4 10872000 16044000 269690 16644000 19555000 22015000 12955000 12882000 12347000 11969000 13413000 10125000 14973000 1274300 17018000 18601000 21891000 13467000 13531000 12625000 11727000 12906000 2 2 2 2 2 2 2 2 2 2 2 10383000 17879000 350310 18386000 12209000 9709800 10757000 13376000 13887000 12242000 15187000 9669900 16685000 1212800 18591000 11691000 10509000 11084000 13381000 14036000 12003000 14610000 2 2 2 2 2 2 2 2 2 2 2 1392300000 720520000 671740000 13114 1304 12189 69442;69443;69444 84001;84002;84003;84004;84005 84003 5 LVVPASQCGSLIGK Unmodified 1427.7806 0.7806351 1792 Q15366;Q15366-6;Q15366-3;Q15366-2;Q15366-4;Q15366-5;Q15366-7;Q15366-8;P57721;P57721-2;P57721-3;P57721-5;P57721-4 PCBP2;PCBP3 Poly(rC)-binding protein 2;Poly(rC)-binding protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 3.4 2.85 5 4 2 4 7 8 60.522 60.399 2;3 4.7149E-43 18244 20211116_3428_TMUAki_TMT10x_P_F1 263.57 158.18 84550000 141820000 582140 156450000 102460000 113050000 79861000 96099000 95842000 88643000 109540000 78727000 132390000 7618400 157920000 97694000 117460000 82683000 98340000 97289000 86880000 105250000 16 16 11 16 16 16 16 16 16 16 16 37284000 59867000 239410 64995000 64482000 77140000 45220000 39745000 40296000 36043000 45356000 34717000 55881000 3644900 66125000 61355000 76996000 46723000 42187000 41389000 35354000 43597000 7 7 5 7 7 7 7 7 7 7 7 47266000 81956000 342730 91453000 37974000 35909000 34642000 56354000 55546000 52599000 64185000 44011000 76510000 3973500 91796000 36339000 40467000 35960000 56153000 55900000 51526000 61649000 9 9 6 9 9 9 9 9 9 9 9 15899000000 10162000000 5737700000 13115 1792 12190 69445;69446;69447;69448;69449;69450;69451;69452;69453;69454;69455;69456;69457;69458;69459 84006;84007;84008;84009;84010;84011;84012;84013;84014;84015;84016;84017;84018;84019;84020;84021;84022;84023;84024;84025 84007 20 LVVPATQCGSLIGK Unmodified 1441.7963 0.79628516 1791 Q15365 PCBP1 Poly(rC)-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.2 2.51 4 4 4 3 8 7 62.162 61.961 2;3 2.3386E-37 20424 20211116_3429_TMUAki_TMT10x_P_F2 250.48 85.58 105220000 174940000 715730 186070000 129000000 143780000 103730000 126800000 123990000 116580000 135020000 97968000 163280000 9125100 188400000 123060000 148700000 107160000 129470000 125640000 114280000 129910000 20 20 9 20 20 20 20 20 20 20 20 45193000 72561000 530280 77232000 74996000 95150000 56280000 51870000 51807000 48130000 54188000 42081000 67724000 4478700 78728000 71459000 94855000 57928000 54810000 52985000 47160000 52200000 9 9 5 9 9 9 9 9 9 9 9 60025000 102380000 185450 108840000 54005000 48626000 47446000 74928000 72184000 68446000 80834000 55887000 95551000 4646400 109680000 51601000 53842000 49235000 74660000 72659000 67115000 77710000 11 11 4 11 11 11 11 11 11 11 11 21496000000 12000000000 9495600000 13116 1791 12191 69460;69461;69462;69463;69464;69465;69466;69467;69468;69469;69470;69471;69472;69473;69474 84026;84027;84028;84029;84030;84031;84032;84033;84034;84035;84036;84037;84038;84039;84040;84041;84042;84043;84044;84045;84046 84030 21 LVVSTQTALA Unmodified 1001.5757 0.57571092 38 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 61.03 61.19 2 0.00029184 18126 20211116_3444_TMUAki_TMT10x_S_F5 114.6 98.908 + 11984000 19930000 312870 20182000 15272000 19888000 14350000 16734000 14842000 15745000 16341000 11160000 18598000 1331200 20567000 14640000 20208000 14619000 17143000 15131000 15418000 15717000 4 4 4 4 4 4 4 4 4 4 4 6527000 10244000 207060 10802000 8731600 14303000 8625300 8471600 7470200 8218500 8480600 6078800 9560700 764980 11033000 8382200 14224000 8718800 8900100 7686000 8037000 8149600 2 2 2 2 2 2 2 2 2 2 2 5456600 9685900 105810 9379600 6540800 5584800 5724500 8262100 7372100 7526300 7860700 5081400 9036800 566190 9533600 6257500 5983700 5900200 8243200 7445100 7380900 7567800 2 2 2 2 2 2 2 2 2 2 2 1341400000 491690000 849700000 13117 38 12192 69475;69476;69477;69478;69479 84047;84048;84049;84050 84049 4 LVVVGAGGVGK Unmodified 954.58622 0.58621603 477;478 P01111;P01116;P01112;P01112-2;P01116-2 NRAS;KRAS;HRAS GTPase NRas;GTPase KRas;GTPase KRas, N-terminally processed;GTPase HRas;GTPase HRas, N-terminally processed no no 0 0 0 0 By MS/MS 1.5 0.5 1 1 2 52.735 52.454 2 1.3191E-17 15283 20211116_3440_TMUAki_TMT10x_S_F2 196.25 170.51 2339100 3710800 0 3895400 2070500 1907400 1842000 2538800 2457600 2364400 3085900 2177600 3463300 148420 3931200 1976800 2080000 1899400 2544200 2495600 2316300 2957400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2339100 3710800 0 3895400 2070500 1907400 1842000 2538800 2457600 2364400 3085900 2177600 3463300 148420 3931200 1976800 2080000 1899400 2544200 2495600 2316300 2957400 1 1 0 1 1 1 1 1 1 1 1 155980000 0 155980000 13118 477;478 12193 69480;69481 84051;84052 84052 2 LVWIPSER Unmodified 998.55492 0.5549159 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS 7 0 1 1 60.886 61.379 2 0.039371 20455 20211116_3446_TMUAki_TMT10x_S_F7 65.235 43.698 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13119 935 12194 69482 84053 84053 1 LVYDGIR Unmodified 834.45995 0.45995289 922 P35221;P35221-2;P35221-3 CTNNA1 Catenin alpha-1 yes no 0 0 0 0 By MS/MS 5 0 1 1 44.732 44.855 2 0.025573 12622 20211116_3433_TMUAki_TMT10x_P_F5 82.386 31.847 2045500 2917500 32884 3395900 3981000 4210100 2351700 2082200 2222100 1993400 2593200 1904800 2724200 227340 3442800 3778200 4190900 2466600 2221700 2279400 1950600 2490100 1 1 1 1 1 1 1 1 1 1 1 2045500 2917500 32884 3395900 3981000 4210100 2351700 2082200 2222100 1993400 2593200 1904800 2724200 227340 3442800 3778200 4190900 2466600 2221700 2279400 1950600 2490100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72651000 72651000 0 13120 922 12195 69483 84054 84054 1 LVYILNR Unmodified 889.53854 0.53853756 1798 Q15393;Q15393-2 SF3B3 Splicing factor 3B subunit 3 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 58.823 58.495 2 0.0014953 20591 20211116_3441_TMUAki_TMT10x_S_F3 146.66 72.145 7875400 11870000 0 13079000 11004000 11229000 7837200 10317000 9829200 8382300 10530000 7332200 11080000 621120 13229000 10467000 11533000 8176900 10478000 9937200 8266300 10136000 2 2 0 2 2 2 2 2 2 2 2 3617200 5073000 0 5878500 6766700 7835800 4270900 4521700 4304300 3633800 4734300 3367800 4736700 328570 5969400 6424500 7787400 4463700 4738100 4392700 3585500 4553600 1 1 0 1 1 1 1 1 1 1 1 4258200 6796800 0 7200100 4237400 3393200 3566300 5795600 5524900 4748600 5795400 3964300 6343700 292550 7259900 4042300 3745600 3713200 5740000 5544500 4680800 5582200 1 1 0 1 1 1 1 1 1 1 1 666800000 376040000 290760000 13121 1798 12196 69484;69485 84055;84056 84056 2 LVYLVENPGGYVAYSK Unmodified 1770.9192 0.91923707 480 P02786 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes yes 0 0 0 0 By MS/MS By MS/MS 4 3.46 4 3 4 3 77.273 77.254 2;3 6.8803E-30 27092 20211116_3439_TMUAki_TMT10x_S_F1 176.05 154.68 34174000 55304000 1044900 52813000 30735000 47890000 41887000 22909000 17685000 24995000 33996000 31827000 51595000 3729400 53980000 29812000 48530000 41155000 24615000 19630000 24325000 32289000 5 5 4 5 5 5 5 5 5 5 5 23164000 36308000 630210 34562000 18225000 36785000 27723000 15993000 12004000 16499000 21930000 21573000 33873000 2409100 35415000 17750000 36870000 27138000 17325000 13252000 16093000 20847000 3 3 2 3 3 3 3 3 3 3 3 11010000 18996000 414690 18251000 12511000 11105000 14164000 6915400 5681600 8495800 12066000 10254000 17722000 1320300 18565000 12062000 11660000 14018000 7289900 6377700 8232300 11442000 2 2 2 2 2 2 2 2 2 2 2 4028800000 2540900000 1487800000 13122 480 12197 69486;69487;69488;69489;69490;69491;69492 84057;84058;84059;84060;84061;84062;84063 84062 7 LWCTYHEK Unmodified 1135.5121 0.51206481 680 P15121 AKR1B1 Aldose reductase yes yes 0 0 0 0 By MS/MS 7 0 1 1 40.812 41.415 3 0.0018391 12276 20211116_3446_TMUAki_TMT10x_S_F7 96.668 80.094 666380 1106400 49563 1437500 752710 621730 734750 616030 538950 602860 1009300 620830 1033600 102650 1430900 724280 683570 740160 626230 573540 589320 959030 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 666380 1106400 49563 1437500 752710 621730 734750 616030 538950 602860 1009300 620830 1033600 102650 1430900 724280 683570 740160 626230 573540 589320 959030 1 1 1 1 1 1 1 1 1 1 1 92591000 0 92591000 13123 680 12198 69493 84064 84064 1 LWDFQGFECIR Unmodified 1469.6762 0.67617003 1025 P43034;P43034-2 PAFAH1B1 Platelet-activating factor acetylhydrolase IB subunit alpha yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 78.583 78.632 2 9.0116E-06 27273 20211116_3435_TMUAki_TMT10x_P_F7 118.04 91.921 9401700 16105000 0 13668000 11455000 14774000 12676000 9820200 8119800 9256300 11930000 8753400 15019000 749390 14132000 11010000 14871000 12653000 10218000 8595100 9063400 11391000 2 2 0 2 2 2 2 2 2 2 2 4850400 8532000 0 7300400 5124700 9759000 7224700 5321700 4490100 5434500 5935900 4515900 7956700 366090 7571300 4964000 9690400 7133900 5638000 4738800 5303000 5681400 1 1 0 1 1 1 1 1 1 1 1 4551200 7573100 0 6367600 6329900 5014700 5451400 4498600 3629800 3821800 5994600 4237500 7062000 383300 6561000 6046100 5180500 5519100 4579600 3856300 3760400 5709500 1 1 0 1 1 1 1 1 1 1 1 1397600000 501350000 896300000 13124 1025 12199 69494;69495 84065;84066 84065 2 LWDLTTGTTTR Unmodified 1263.6459 0.64591575 1405 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 60.419 60.774 2 5.0268E-19 19671 20211116_3435_TMUAki_TMT10x_P_F7 232.72 195 37384000 66352000 166770 76434000 56545000 56195000 46753000 35284000 32254000 38206000 50980000 34806000 61951000 3184300 76960000 53960000 58026000 47487000 37017000 34112000 37193000 48599000 5 5 3 5 5 5 5 5 5 5 5 17985000 31060000 136790 35887000 36708000 38358000 29358000 15221000 13670000 16892000 22827000 16747000 29000000 1880800 36307000 35021000 38404000 29678000 16693000 14918000 16428000 21737000 2 2 2 2 2 2 2 2 2 2 2 19399000 35292000 29980 40547000 19836000 17837000 17395000 20063000 18584000 21314000 28153000 18060000 32951000 1303500 40654000 18938000 19622000 17809000 20324000 19193000 20765000 26862000 3 3 1 3 3 3 3 3 3 3 3 4091300000 2055600000 2035700000 13125 1405 12200 69496;69497;69498;69499;69500 84067;84068;84069;84070;84071;84072 84068 6 LWDLTTGTTTRR Unmodified 1419.747 0.74702678 1405 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 49.237 48.924 3 0.00013032 16697 20211116_3441_TMUAki_TMT10x_S_F3 94.688 62.368 6695900 10387000 0 12108000 12352000 11565000 7165500 7167000 6971300 6290700 9498500 6233700 9698400 355310 12222000 11707000 11716000 7533500 7482700 7190300 6179900 9084600 3 3 0 3 3 3 3 3 3 3 3 4543600 6790100 0 7582900 10364000 10374000 5881400 5001300 5012000 4341900 6352200 4230000 6338800 217480 7721500 9820400 10275000 6173200 5336400 5184400 4267700 6086200 2 2 0 2 2 2 2 2 2 2 2 2152300 3596700 0 4524700 1988600 1191500 1284100 2165700 1959300 1948800 3146300 2003700 3359600 137830 4500500 1886600 1441300 1360300 2146300 2005800 1912300 2998400 1 1 0 1 1 1 1 1 1 1 1 697630000 347170000 350460000 13126 1405 12201 69501;69502 84073;84074;84075 84075 3 LWEEQLAAAK Unmodified 1157.6081 0.60807369 666 P14314;P14314-2 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 62.214 62.349 2 4.6962E-09 18617 20211116_3444_TMUAki_TMT10x_S_F5 152.97 112.7 18332000 28735000 93739 32475000 35150000 33924000 26529000 13149000 12740000 14182000 22378000 17069000 26827000 1819600 32888000 33491000 34004000 26933000 14449000 13906000 13808000 21289000 3 3 2 3 3 3 3 3 3 3 3 18332000 28735000 93739 32475000 35150000 33924000 26529000 13149000 12740000 14182000 22378000 17069000 26827000 1819600 32888000 33491000 34004000 26933000 14449000 13906000 13808000 21289000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1209400000 1209400000 0 13127 666 12202 69503;69504;69505 84076;84077;84078;84079 84079 4 LWGDRYFDPANGK Unmodified 1537.7314 0.73137672 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 1 By MS/MS 7.5 0.5 1 1 2 58.131 58.584 3 0.00019917 17586 20211116_3436_TMUAki_TMT10x_P_F8 86.413 65.986 13650000 21385000 63715 23892000 18360000 24234000 18258000 10638000 7970600 9972400 14855000 12710000 19964000 1195000 24202000 17601000 24362000 18207000 11482000 8803100 9766900 14117000 2 2 1 2 2 2 2 2 2 2 2 13650000 21385000 63715 23892000 18360000 24234000 18258000 10638000 7970600 9972400 14855000 12710000 19964000 1195000 24202000 17601000 24362000 18207000 11482000 8803100 9766900 14117000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 924190000 924190000 0 13128 653 12203 69506;69507 84080;84081 84080 2 LWNMPENNGLHAR Oxidation (M) 1566.7361 0.73614452 3150 Q9UK59;Q9UK59-2 DBR1 Lariat debranching enzyme yes no 0 0 1 0 By MS/MS 6 0 1 1 38.008 38.003 3 0.0016395 8679 20211116_3434_TMUAki_TMT10x_P_F6 67.252 51.712 285310 426180 0 571090 850540 624330 349450 311360 332990 259660 385550 265630 398210 29438 573170 802800 625710 380150 330810 341350 255730 370300 1 1 0 1 1 1 1 1 1 1 1 285310 426180 0 571090 850540 624330 349450 311360 332990 259660 385550 265630 398210 29438 573170 802800 625710 380150 330810 341350 255730 370300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17130000 17130000 0 13129 3150 12204 69508 84082 84082 3164 1 LWPSGDR Unmodified 829.40825 0.40825167 767 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 42.816 42.928 2 0.034121 10539 20211116_3434_TMUAki_TMT10x_P_F6 77.741 58.935 20120000 29151000 209360 34244000 34380000 25283000 20346000 16272000 15302000 15372000 24680000 18734000 27220000 1888100 34441000 32614000 26107000 21216000 16972000 16121000 15050000 23518000 4 4 2 4 4 4 4 4 4 4 4 12056000 16544000 0 18951000 26937000 19005000 12286000 8786400 8039800 8134700 13791000 11224000 15446000 1033100 19164000 25449000 19128000 13097000 9429500 8569000 7971700 13126000 2 2 0 2 2 2 2 2 2 2 2 8064200 12607000 209360 15293000 7443400 6278400 8059900 7485200 7262500 7237100 10889000 7510100 11774000 855000 15277000 7165300 6979200 8118600 7542100 7551900 7078400 10392000 2 2 2 2 2 2 2 2 2 2 2 596800000 354600000 242210000 13130 767 12205 69509;69510;69511;69512 84083;84084;84085 84083 3 LWQTVVGK Unmodified 929.53345 0.53345218 3284 Q9Y3F4;Q9Y3F4-2 STRAP Serine-threonine kinase receptor-associated protein yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 63.446 63.178 2 0.0021349 22560 20211116_3441_TMUAki_TMT10x_S_F3 126.41 85.383 27417000 44707000 394220 45725000 42181000 40935000 34601000 25357000 24400000 26072000 33767000 25531000 41720000 2804800 46504000 40276000 41647000 35178000 26588000 25602000 25434000 32284000 4 4 3 4 4 4 4 4 4 4 4 16713000 25528000 127880 26031000 29940000 30425000 22637000 13331000 13009000 13486000 18519000 15562000 23823000 1647600 26586000 28529000 30340000 23046000 14421000 13851000 13165000 17694000 2 2 1 2 2 2 2 2 2 2 2 10704000 19178000 266350 19695000 12242000 10509000 11964000 12026000 11391000 12586000 15248000 9968400 17897000 1157200 19918000 11747000 11307000 12132000 12167000 11751000 12269000 14590000 2 2 2 2 2 2 2 2 2 2 2 963960000 752600000 211360000 13131 3284 12206 69513;69514;69515;69516 84086;84087;84088;84089;84090 84090 5 LWSLDSDEPVADIEGHTVR Unmodified 2138.028 0.02801225 200 O43172;O43172-2 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 1 3 68.305 68.103 3 4.5939E-07 24491 20211116_3441_TMUAki_TMT10x_S_F3 89.374 72.295 1891800 3952000 106910 3144100 3002600 2370700 2723900 2496000 2596200 2760600 2916500 1762200 3684600 272030 3253000 2878500 2465700 2773600 2539400 2658100 2685300 2803500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1891800 3952000 106910 3144100 3002600 2370700 2723900 2496000 2596200 2760600 2916500 1762200 3684600 272030 3253000 2878500 2465700 2773600 2539400 2658100 2685300 2803500 1 1 1 1 1 1 1 1 1 1 1 363000000 0 363000000 13132 200 12207 69517;69518;69519;69520 84091;84092;84093;84094 84093 4 LWSVPDCNLLHTLR Unmodified 1722.8876 0.88755978 200 O43172;O43172-2 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 71.554 71.258 3 0.00020192 24737 20211116_3430_TMUAki_TMT10x_P_F3 77.068 62.389 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13133 200 12208 69521;69522 84095;84096 84095 2 LWTGGLDNTVR Unmodified 1230.6357 0.63568542 1512 Q04726;Q04726-3;Q04726-2;Q04726-7;Q04726-6;Q04726-5;Q04726-4;Q04727;Q04724;Q04725;Q04725-2;Q04727-2;Q04727-4;Q04727-3;Q04725-3 TLE3;TLE4;TLE1;TLE2 Transducin-like enhancer protein 3;Transducin-like enhancer protein 4;Transducin-like enhancer protein 1;Transducin-like enhancer protein 2 yes no 0 0 0 0 By MS/MS 7 0 1 1 56.78 57.305 2 0.094068 18797 20211116_3446_TMUAki_TMT10x_S_F7 54.259 32.959 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13134 1512 12209 69523 84097 84097 1 LWTLVSEQTR Unmodified 1231.6561 0.65608651 1050 P46776 RPL27A 60S ribosomal protein L27a yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 66.442 66.412 2 6.4133E-15 22890 20211116_3439_TMUAki_TMT10x_S_F1 236.66 194.38 46870000 79037000 593480 88940000 58028000 60848000 54323000 33519000 27402000 34595000 55005000 43645000 73787000 4543000 89614000 55580000 63106000 54463000 35491000 30035000 33743000 52207000 6 6 5 6 6 6 6 6 6 6 6 22003000 35987000 268460 41517000 36282000 43015000 34212000 15992000 13360000 16600000 25992000 20488000 33600000 2222100 41986000 34750000 43121000 34166000 17642000 14952000 16187000 24682000 3 3 2 3 3 3 3 3 3 3 3 24867000 43050000 325020 47423000 21747000 17833000 20111000 17527000 14042000 17995000 29013000 23156000 40186000 2320900 47628000 20830000 19985000 20297000 17850000 15082000 17556000 27524000 3 3 3 3 3 3 3 3 3 3 3 6611000000 4004000000 2607000000 13135 1050 12210 69524;69525;69526;69527 84098;84099;84100;84101;84102;84103 84101 6 LYAGSTVK Unmodified 837.45962 0.45961853 1871 Q16881;Q16881-3;Q16881-4;Q16881-5;Q16881-2;Q16881-6;Q16881-7 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 38.389 38.878 2 0.00043225 11140 20211116_3435_TMUAki_TMT10x_P_F7 147.52 76.606 1539500 2805600 30392 2320000 2609000 3003000 2042500 2098400 2437900 2011100 2491500 1433600 2616100 170940 2411300 2489200 2996800 2113700 2176500 2464800 1967700 2401800 5 5 5 5 5 5 5 5 5 5 5 727600 1369800 13638 1097000 1633500 2138700 1119700 1088700 1267000 1015200 1235000 677570 1277100 85721 1154000 1554100 2091000 1167200 1157700 1281400 994480 1192400 1 1 1 1 1 1 1 1 1 1 1 811850 1435800 16754 1222900 975560 864220 922800 1009700 1170900 995910 1256400 756040 1339000 85215 1257300 935100 905800 946480 1018800 1183400 973220 1209400 4 4 4 4 4 4 4 4 4 4 4 73714000 42670000 31044000 13136 1871 12211 69528;69529;69530 84104;84105;84106;84107;84108 84104 5 LYANMFER Oxidation (M) 1058.4855 0.48551571 1497 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 0 0 1 0 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 42.604 42.726 2 0.040765 10588 20211116_3444_TMUAki_TMT10x_S_F5 66.799 55.975 3106800 5014100 15827 5727800 7107400 6722200 3982900 5719400 5932600 4245000 5015500 2892600 4681400 306790 5807800 6735900 6764300 4263700 5821600 5917600 4206700 4866700 2 2 1 2 2 2 2 2 2 2 2 2141700 3367100 0 3789600 6263400 5944200 3251900 3928400 3984300 2741500 3373000 1994000 3143400 213730 3868400 5928500 5877400 3478700 4060400 3999600 2726400 3272700 1 1 0 1 1 1 1 1 1 1 1 965050 1647100 15827 1938200 844050 777950 730960 1791000 1948400 1503500 1642500 898670 1538000 93065 1939400 807430 886860 785040 1761200 1918000 1480200 1593900 1 1 1 1 1 1 1 1 1 1 1 215290000 163800000 51486000 13137 1497 12212 69531;69532;69533 84109;84110 84109 2029 2 LYAPFYSSDILIASPLGLR Unmodified 2095.1354 0.13537785 1963 Q68CQ4 DIEXF Digestive organ expansion factor homolog yes yes 0 0 0 0 By MS/MS 4 0 1 1 81.255 81.263 2 6.152E-07 27199 20211116_3431_TMUAki_TMT10x_P_F4 98.592 69.787 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13138 1963 12213 69534 84111 84111 1 LYASHSQFIK Unmodified 1192.6241 0.6240581 2704 Q9BW91;Q9BW91-2 NUDT9 ADP-ribose pyrophosphatase, mitochondrial yes no 0 0 0 0 By MS/MS 1 0 1 1 41.883 41.883 3 0.0033511 10787 20211116_3428_TMUAki_TMT10x_P_F1 69.276 49.285 847790 1446100 0 1560300 2215000 1950000 1083500 1035100 1173100 1108200 1135100 789320 1349700 81723 1589500 2094900 1942000 1161000 1100800 1188200 1079300 1096200 1 1 0 1 1 1 1 1 1 1 1 847790 1446100 0 1560300 2215000 1950000 1083500 1035100 1173100 1108200 1135100 789320 1349700 81723 1589500 2094900 1942000 1161000 1100800 1188200 1079300 1096200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 51036000 51036000 0 13139 2704 12214 69535 84112 84112 1 LYAVFTDYEHDK Unmodified 1499.6933 0.69325988 2272 Q8TCS8 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial yes yes 0 0 0 0 By MS/MS 4 0 1 1 64.013 64.118 3 0.010369 20200 20211116_3431_TMUAki_TMT10x_P_F4 58.098 36.467 3396400 5677000 73271 6531000 4593400 6474100 4858800 3248300 3210800 3334700 4286500 3162900 5300400 366630 6601600 4415400 6526400 4863600 3468000 3376700 3253300 4101700 1 1 1 1 1 1 1 1 1 1 1 3396400 5677000 73271 6531000 4593400 6474100 4858800 3248300 3210800 3334700 4286500 3162900 5300400 366630 6601600 4415400 6526400 4863600 3468000 3376700 3253300 4101700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 337630000 337630000 0 13140 2272 12215 69536 84113 84113 1 LYAVGDNPMSDVYGANLFHQYLQK Oxidation (M) 2758.3061 0.30610137 2719 Q9BXW7;Q9BXW7-2 CECR5 Cat eye syndrome critical region protein 5 yes no 0 0 1 0 By MS/MS By matching 8 0 2 1 1 77.087 77.053 3 1.7678E-06 25225 20211116_3436_TMUAki_TMT10x_P_F8 81.967 69.771 1902400 3354900 8675.3 2598800 1361200 2851300 1725900 968940 1411000 1468300 1896900 1771400 3127600 158230 2708400 1314900 2846800 1721900 1095100 1466500 1413400 1814800 1 1 1 1 1 1 1 1 1 1 1 1902400 3354900 8675.3 2598800 1361200 2851300 1725900 968940 1411000 1468300 1896900 1771400 3127600 158230 2708400 1314900 2846800 1721900 1095100 1466500 1413400 1814800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1346600000 904150000 442470000 13141 2719 12216 69537;69538 84114 84114 2921 1 LYAVHQEGNK Unmodified 1157.5829 0.58292157 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 32.813 32.797 3 1.2528E-08 7798 20211116_3433_TMUAki_TMT10x_P_F5 162.36 126.82 4648800 7764900 257.69 6999600 7866100 8753000 5636400 3917700 4782300 3911500 5822300 4328100 7242600 384180 7221000 7483300 8700100 5807400 4227000 4939500 3820500 5584300 3 3 1 3 3 3 3 3 3 3 3 4648800 7764900 257.69 6999600 7866100 8753000 5636400 3917700 4782300 3911500 5822300 4328100 7242600 384180 7221000 7483300 8700100 5807400 4227000 4939500 3820500 5584300 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 271150000 271150000 0 13142 1146 12217 69539;69540 84115;84116;84117 84116 3 LYCPVEFSK Unmodified 1141.5478 0.54778161 1187 P52788;P52788-2 SMS Spermine synthase yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 59.124 59.748 2 6.2171E-06 19783 20211116_3446_TMUAki_TMT10x_S_F7 167.33 137.59 19763000 30912000 229390 34978000 27390000 29401000 21700000 21893000 21334000 20123000 25512000 18402000 28859000 1904200 35313000 26130000 30127000 22298000 22585000 21868000 19726000 24481000 2 2 1 2 2 2 2 2 2 2 2 11757000 17815000 229390 19698000 20771000 23454000 15131000 12243000 12462000 11359000 14780000 10949000 16630000 1314800 20018000 19788000 23410000 15560000 12987000 12877000 11130000 14186000 1 1 1 1 1 1 1 1 1 1 1 8005300 13097000 0 15280000 6619500 5946500 6569500 9650000 8871600 8764300 10732000 7453300 12229000 589420 15294000 6342300 6716800 6737600 9598000 8990600 8596200 10295000 1 1 0 1 1 1 1 1 1 1 1 1927100000 1237100000 690020000 13143 1187 12218 69541;69542 84118;84119 84119 2 LYDGLFK Unmodified 854.4538 0.45380487 1847 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.707 1 2 1 3 1 64.508 64.865 2 0.0041837 21345 20211116_3435_TMUAki_TMT10x_P_F7 114.72 54.57 46423000 77344000 1022800 87546000 68359000 79458000 53517000 57996000 51137000 52163000 64235000 43232000 72209000 5109200 88470000 65235000 80963000 54987000 59875000 52592000 51186000 61560000 3 3 3 3 3 3 3 3 3 3 3 27157000 46356000 690440 50092000 48688000 63204000 37374000 33452000 29570000 30805000 37113000 25291000 43269000 3196500 51034000 46442000 62911000 38260000 35434000 30692000 30195000 35568000 2 2 2 2 2 2 2 2 2 2 2 19266000 30988000 332350 37454000 19671000 16254000 16143000 24544000 21567000 21359000 27122000 17941000 28940000 1912700 37435000 18793000 18052000 16727000 24441000 21900000 20991000 25992000 1 1 1 1 1 1 1 1 1 1 1 2880300000 1818700000 1061600000 13144 1847 12219 69543;69544;69545;69546 84120;84121;84122;84123 84121 4 LYDIDVAK Unmodified 935.4964 0.49639797 1364 P62750 RPL23A 60S ribosomal protein L23a yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 57.426 57.524 2 0.00041033 17948 20211116_3442_TMUAki_TMT10x_S_F4 141.47 85.749 21879000 32743000 147130 39452000 34851000 32518000 23570000 26682000 26217000 23395000 31812000 20373000 30577000 2118900 39670000 33142000 33424000 24580000 27325000 26754000 22984000 30514000 3 3 2 3 3 3 3 3 3 3 3 9509800 14667000 86219 15318000 24811000 23127000 13378000 14472000 11683000 11343000 14674000 8855200 13688000 1083100 15698000 23508000 22884000 14116000 15057000 12065000 11207000 14063000 1 1 1 1 1 1 1 1 1 1 1 12369000 18076000 60913 24134000 10040000 9391200 10192000 12210000 14534000 12052000 17138000 11518000 16889000 1035800 23972000 9633700 10540000 10464000 12268000 14688000 11777000 16451000 2 2 1 2 2 2 2 2 2 2 2 1786400000 895840000 890570000 13145 1364 12220 69547;69548;69549;69550 84124;84125;84126 84126 3 LYDILGVPPGASENELKK Unmodified 1942.0411 0.041143118 298 O60884 DNAJA2 DnaJ homolog subfamily A member 2 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0.816 1 1 1 2 1 69.915 70.06 3 5.7041E-05 23478 20211116_3435_TMUAki_TMT10x_P_F7 79.545 63.603 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13146 298 12221 69551;69552;69553 84127;84128;84129 84127 3 LYDKIDPEKLSVNSHFMK Oxidation (M) 2179.0983 0.098340421 115 O14561 NDUFAB1 Acyl carrier protein, mitochondrial yes yes 0 0 1 2 By MS/MS 8 0 1 1 55.589 55.721 5 0.0011242 16454 20211116_3436_TMUAki_TMT10x_P_F8 62.658 53.288 3817800 6414200 97475 5999900 6989900 9940700 5845300 5624000 5711300 5062500 5779900 3555500 5983600 451800 6209100 6679400 9786900 5984800 5919100 5818600 4967400 5573500 1 1 1 1 1 1 1 1 1 1 1 3817800 6414200 97475 5999900 6989900 9940700 5845300 5624000 5711300 5062500 5779900 3555500 5983600 451800 6209100 6679400 9786900 5984800 5919100 5818600 4967400 5573500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 347680000 347680000 0 13147 115 12222 69554 84130 84130 93 1 LYDLNHNEIGELIR Unmodified 1697.8737 0.87368386 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 By MS/MS By MS/MS 4.78 1.31 2 2 2 2 1 4 5 63.89 63.874 3 3.8973E-30 19530 20211116_3445_TMUAki_TMT10x_S_F6 213.99 186.13 72117000 116510000 977380 118270000 87140000 100990000 89524000 73538000 64609000 69874000 87873000 67152000 108720000 6694000 120270000 83646000 103330000 89912000 76045000 67644000 68394000 84048000 12 12 8 12 12 12 12 12 12 12 12 36507000 56648000 759430 57859000 42475000 65001000 49424000 32394000 27877000 31186000 41489000 33995000 52863000 3519200 59047000 40928000 65046000 49102000 34545000 29786000 30507000 39601000 5 5 3 5 5 5 5 5 5 5 5 35611000 59862000 217950 60409000 44665000 35993000 40100000 41144000 36732000 38688000 46384000 33158000 55859000 3174800 61223000 42718000 38289000 40810000 41499000 37858000 37886000 44447000 7 7 5 7 7 7 7 7 7 7 7 12001000000 6600300000 5400300000 13148 352 12223 69555;69556;69557;69558;69559;69560;69561;69562;69563 84131;84132;84133;84134;84135;84136;84137;84138;84139;84140;84141;84142 84141 12 LYDNLLEQNLIR Unmodified 1502.8093 0.80929269 73 O00231;O00231-2 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 0 0 0 0 By MS/MS By MS/MS 4.78 1.31 2 2 2 2 1 4 5 74.899 74.844 2 2.6299E-48 23626 20211116_3444_TMUAki_TMT10x_S_F5 303.71 227.97 49554000 82424000 104140 74588000 58380000 69594000 56821000 45558000 44234000 47193000 58927000 46137000 76881000 3835200 76571000 55913000 70665000 57328000 47583000 46072000 46024000 56390000 11 11 4 11 11 11 11 11 11 11 11 19110000 31740000 43257 29092000 18155000 34854000 21133000 18427000 17905000 19146000 23128000 17793000 29607000 1522300 29952000 17479000 34782000 21180000 19586000 18542000 18669000 22149000 5 5 2 5 5 5 5 5 5 5 5 30444000 50683000 60884 45495000 40225000 34740000 35688000 27132000 26328000 28048000 35799000 28344000 47273000 2312900 46618000 38433000 35883000 36147000 27997000 27530000 27355000 34241000 6 6 2 6 6 6 6 6 6 6 6 9900200000 5336200000 4563900000 13149 73 12224 69564;69565;69566;69567;69568;69569;69570;69571;69572 84143;84144;84145;84146;84147;84148;84149;84150;84151;84152;84153;84154 84150 12 LYDVPANSMR Oxidation (M) 1180.5547 0.55465791 234 O43684;O43684-2 BUB3 Mitotic checkpoint protein BUB3 yes no 0 0 1 0 By MS/MS 4 0 1 1 36.883 37.015 2 0.012631 9410 20211116_3442_TMUAki_TMT10x_S_F4 69.812 40.474 82883 152880 0 189370 91650 79111 81396 112020 127280 85759 130830 77163 142790 5924.9 188960 87551 88133 84520 111450 127610 84838 126100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 82883 152880 0 189370 91650 79111 81396 112020 127280 85759 130830 77163 142790 5924.9 188960 87551 88133 84520 111450 127610 84838 126100 1 1 0 1 1 1 1 1 1 1 1 15246000 0 15246000 13150 234 12225 69573 84155 84155 186 1 LYEIGAGTSEVRR Unmodified 1449.7576 0.75759147 816 P26440;P26440-2 IVD Isovaleryl-CoA dehydrogenase, mitochondrial yes no 0 0 0 1 By MS/MS 4 0 1 1 38.657 38.838 3 0.078848 10347 20211116_3442_TMUAki_TMT10x_S_F4 38.008 13.978 222180 322330 2760.4 422100 211500 176700 198430 287050 287550 252160 348820 206890 301140 20843 419900 202630 197630 204710 285240 290800 247710 334590 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 222180 322330 2760.4 422100 211500 176700 198430 287050 287550 252160 348820 206890 301140 20843 419900 202630 197630 204710 285240 290800 247710 334590 1 1 1 1 1 1 1 1 1 1 1 17268000 0 17268000 13151 816 12226 69574 84156 84156 1 LYEQLSGK Unmodified 936.49165 0.49164694 867 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 49.319 49.484 2 0.0029186 14390 20211116_3433_TMUAki_TMT10x_P_F5 100.84 40.247 6880100 11589000 130230 11348000 7794300 5810400 6894900 9652800 9167400 7692800 10397000 6407000 10813000 704580 11511000 7458800 6347100 7111200 9561700 9270400 7593900 9991600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6880100 11589000 130230 11348000 7794300 5810400 6894900 9652800 9167400 7692800 10397000 6407000 10813000 704580 11511000 7458800 6347100 7111200 9561700 9270400 7593900 9991600 2 2 2 2 2 2 2 2 2 2 2 349270000 0 349270000 13152 867 12227 69575;69576;69577;69578 84157;84158;84159;84160 84157 4 LYFKPIGDPVFAR Unmodified 1521.8344 0.83438523 20 A6NHR9;A6NHR9-2;A6NHR9-3 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 67.592 67.544 3 3.6729E-06 21547 20211116_3431_TMUAki_TMT10x_P_F4 109.07 82.943 16759000 27900000 97739 26485000 20561000 21672000 19138000 19683000 18505000 19459000 20732000 15604000 26029000 1458200 27047000 19680000 22330000 19467000 20106000 18932000 19014000 19931000 3 3 2 3 3 3 3 3 3 3 3 5137600 8544800 9131.4 8382000 6150200 10291000 6815300 6584600 5801800 6084300 6336000 4783700 7972600 448630 8591000 5914400 10282000 6846900 6866800 5965700 5962900 6095600 1 1 1 1 1 1 1 1 1 1 1 11621000 19355000 88608 18103000 14410000 11381000 12322000 13098000 12703000 13374000 14396000 10821000 18056000 1009500 18456000 13765000 12048000 12620000 13239000 12966000 13051000 13835000 2 2 1 2 2 2 2 2 2 2 2 1757400000 930840000 826540000 13153 20 12228 69579;69580 84161;84162;84163 84161 3 LYFLQCETCHSR Unmodified 1612.7126 0.71263189 738 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 0 0 0 0 By MS/MS By MS/MS 6.17 2.41 1 1 2 2 3 3 49.241 49.409 3 2.4251E-15 15593 20211116_3446_TMUAki_TMT10x_S_F7 182.71 178.42 21016000 35987000 370340 36434000 28131000 28969000 22583000 28799000 25846000 25033000 30404000 19571000 33581000 1749400 37025000 26856000 29968000 23298000 29177000 26313000 24604000 29188000 7 7 5 7 7 7 7 7 7 7 7 7034300 11643000 71101 10704000 13160000 16929000 10168000 9998500 8688100 8144900 10372000 6550100 10861000 311170 11080000 12548000 16707000 10424000 10460000 8963100 8031100 9953800 2 2 1 2 2 2 2 2 2 2 2 13982000 24344000 299240 25730000 14971000 12039000 12415000 18801000 17158000 16888000 20031000 13021000 22720000 1438300 25946000 14308000 13261000 12874000 18717000 17350000 16573000 19234000 5 5 4 5 5 5 5 5 5 5 5 4865600000 2505900000 2359700000 13154 738 12229 69581;69582;69583;69584;69585;69586 84164;84165;84166;84167;84168;84169;84170;84171 84169 8 LYGAQFHPEVGLTENGK Unmodified 1858.9214 0.92136233 1128 P49915;P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 0 0 By MS/MS 7 1 1 1 2 54.549 54.654 3 1.3732E-06 15344 20211116_3434_TMUAki_TMT10x_P_F6 91.616 79.451 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13155 1128 12230 69587;69588 84172;84173 84172 2 LYGDADYLEER Unmodified 1342.6041 0.60411052 709 P17812;P17812-2 CTPS1 CTP synthase 1 yes no 0 0 0 0 By MS/MS By MS/MS 2 0.894 2 1 2 2 3 54.301 54.092 2 5.7952E-11 17747 20211116_3439_TMUAki_TMT10x_S_F1 167.06 152.39 24099000 41870000 18121 49983000 30077000 31611000 21688000 29372000 28993000 28655000 31558000 22436000 39100000 1756100 50143000 28607000 33286000 22664000 29955000 29267000 28015000 30363000 5 5 1 5 5 5 5 5 5 5 5 8822200 15236000 0 17583000 17977000 21170000 12549000 10316000 10692000 10138000 10802000 8213200 14226000 721150 17825000 17092000 21101000 12955000 11031000 10963000 9908400 10417000 2 2 0 2 2 2 2 2 2 2 2 15276000 26634000 18121 32400000 12099000 10441000 9139700 19056000 18301000 18517000 20756000 14222000 24874000 1035000 32318000 11515000 12185000 9709100 18924000 18304000 18107000 19946000 3 3 1 3 3 3 3 3 3 3 3 1692200000 852570000 839670000 13156 709 12231 69589;69590;69591;69592;69593 84174;84175;84176;84177 84176 4 LYGEFADPFK Unmodified 1185.5706 0.57062555 354 O75694;O75694-2 NUP155 Nuclear pore complex protein Nup155 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 73.932 73.88 2 0.00049411 23243 20211116_3434_TMUAki_TMT10x_P_F6 106.88 67.171 10670000 17715000 170840 17550000 10563000 18531000 12052000 9900700 8977400 10469000 12175000 9935700 16529000 1040600 17930000 10176000 18624000 12052000 10519000 9381000 10201000 11646000 3 3 2 3 3 3 3 3 3 3 3 10670000 17715000 170840 17550000 10563000 18531000 12052000 9900700 8977400 10469000 12175000 9935700 16529000 1040600 17930000 10176000 18624000 12052000 10519000 9381000 10201000 11646000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 348160000 348160000 0 13157 354 12232 69594;69595;69596;69597 84178;84179;84180;84181;84182;84183 84179 6 LYGNPNTLR Unmodified 1046.5509 0.55089316 1832 Q15814 TBCC Tubulin-specific chaperone C yes yes 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 38.074 38.429 2 0.00084204 9431 20211116_3436_TMUAki_TMT10x_P_F8 110.38 81.226 501070 828630 9713.7 884570 1370000 1238900 666380 662470 734940 578670 769400 466620 773410 62765 903750 1296500 1227300 714850 700130 745900 568610 741150 2 2 2 2 2 2 2 2 2 2 2 501070 828630 9713.7 884570 1370000 1238900 666380 662470 734940 578670 769400 466620 773410 62765 903750 1296500 1227300 714850 700130 745900 568610 741150 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31724000 31724000 0 13158 1832 12233 69598;69599 84184;84185 84185 2 LYGPSSVSFADDFVR Unmodified 1658.794 0.79403655 1136 P50454 SERPINH1 Serpin H1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 73.225 73.45 2 2.4752E-96 23479 20211116_3445_TMUAki_TMT10x_S_F6 336.34 284.99 4679300 8705800 37497 8096500 6487000 8915300 7240000 6114400 6382000 6681000 7240200 4356600 8121200 370430 8315000 6236200 8968900 7277900 6375100 6560600 6501700 6957800 2 2 1 2 2 2 2 2 2 2 2 2227600 4073500 0 3796100 2345800 5088200 2994900 2946200 2888600 3124900 3468100 2073500 3800000 108550 3911600 2260500 5055700 3000600 3108900 2963900 3044600 3327600 1 1 0 1 1 1 1 1 1 1 1 2451700 4632300 37497 4300400 4141300 3827100 4245100 3168300 3493400 3556100 3772100 2283100 4321200 261870 4403400 3975700 3913200 4277300 3266200 3596700 3457100 3630200 1 1 1 1 1 1 1 1 1 1 1 1281000000 441100000 839860000 13159 1136 12234 69600;69601;69602 84186;84187;84188 84187 3 LYGPTNFAPIINHVAR Unmodified 1781.9577 0.95768826 2608 Q99829 CPNE1 Copine-1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.56 1.07 2 2 3 2 4 5 62.498 62.331 2;3 7.3013E-36 19915 20211116_3442_TMUAki_TMT10x_S_F4 215.77 147.75 30634000 52608000 711260 52487000 37899000 42167000 36163000 36621000 35047000 36814000 43729000 28528000 49088000 3245600 53400000 36335000 43469000 36738000 37519000 36012000 35947000 41915000 12 12 8 12 12 12 12 12 12 12 12 11460000 19392000 499150 19359000 15184000 22130000 15917000 13534000 12888000 14114000 16573000 10674000 18095000 1467500 19793000 14608000 22181000 16014000 14212000 13375000 13760000 15873000 4 4 4 4 4 4 4 4 4 4 4 19174000 33215000 212110 33128000 22715000 20036000 20246000 23087000 22159000 22701000 27156000 17854000 30993000 1778100 33607000 21728000 21288000 20724000 23308000 22637000 22187000 26042000 8 8 4 8 8 8 8 8 8 8 8 12024000000 6487200000 5536500000 13160 2608 12235 69603;69604;69605;69606;69607;69608;69609;69610;69611 84189;84190;84191;84192;84193;84194;84195;84196;84197;84198;84199;84200;84201 84198 13 LYGPTNFSPIINHVAR Unmodified 1797.9526 0.95260288 309 O75131 CPNE3 Copine-3 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 59.535 59.371 3 4.3168E-11 18160 20211116_3431_TMUAki_TMT10x_P_F4 135.86 114.3 20766000 37428000 263470 30390000 28607000 39651000 28794000 35337000 35508000 28856000 31185000 19336000 34898000 2010900 31638000 27446000 39725000 29405000 35952000 35676000 28450000 30217000 4 4 2 4 4 4 4 4 4 4 4 11244000 20283000 212880 16949000 16646000 30002000 15996000 18832000 19197000 14590000 16763000 10471000 18914000 1163800 17722000 15955000 29508000 16359000 19583000 19303000 14424000 16246000 2 2 1 2 2 2 2 2 2 2 2 9521500 17145000 50589 13441000 11961000 9648800 12798000 16506000 16312000 14266000 14423000 8865700 15984000 847090 13917000 11491000 10218000 13047000 16369000 16373000 14025000 13971000 2 2 1 2 2 2 2 2 2 2 2 2484400000 1421700000 1062700000 13161 309 12236 69612;69613;69614;69615 84202;84203;84204;84205 84203 4 LYGSAGPPPTGEEDTAEKDEL Unmodified 2174.9855 0.98553831 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 1 By MS/MS By MS/MS 2.3 1.1 3 3 2 2 6 4 57.564 57.379 2;3 6.3118E-80 18694 20211116_3429_TMUAki_TMT10x_P_F2 244 213.87 28686000 48004000 230970 59205000 35947000 45260000 31267000 50799000 51010000 45472000 45731000 26709000 44835000 2421100 59399000 34347000 47092000 32571000 51210000 50843000 44630000 44279000 18 18 10 18 18 18 18 18 18 18 18 10992000 18242000 52738 22003000 20686000 30674000 18718000 19717000 19269000 17279000 16681000 10234000 17035000 923220 22311000 19777000 30468000 19106000 20527000 19487000 16976000 16172000 7 7 3 7 7 7 7 7 7 7 7 17694000 29763000 178230 37202000 15262000 14586000 12549000 31082000 31741000 28193000 29050000 16475000 27800000 1497900 37088000 14570000 16625000 13465000 30683000 31356000 27654000 28107000 11 11 7 11 11 11 11 11 11 11 11 7381000000 4346700000 3034300000 13162 614 12237 69616;69617;69618;69619;69620;69621;69622;69623;69624;69625 84206;84207;84208;84209;84210;84211;84212;84213;84214;84215;84216;84217;84218;84219;84220;84221;84222;84223;84224;84225 84212 20 LYHDPNVNGGTELEPVEGNPYRR Unmodified 2625.2572 0.25717734 1267 P57740;P57740-3;P57740-2 NUP107 Nuclear pore complex protein Nup107 yes no 0 0 0 1 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 43.254 43.389 4 9.501E-57 12075 20211116_3442_TMUAki_TMT10x_S_F4 221.92 198.47 3772400 6212500 100860 6814400 6872600 7258100 5046900 4765900 4829200 3980500 5212000 3513200 5799100 450170 6915900 6550000 7310700 5208000 4947900 4936000 3919900 5016000 4 4 4 4 4 4 4 4 4 4 4 3416800 5519600 90353 6057000 6552700 6925900 4758600 4271300 4235900 3497400 4642300 3182100 5152400 411410 6154200 6243400 6942400 4904500 4453600 4346600 3447600 4465600 3 3 3 3 3 3 3 3 3 3 3 355510 692880 10504 757390 319950 332180 288260 494610 593250 483100 569790 331090 646770 38765 761740 306630 368280 303500 494340 589350 472300 550380 1 1 1 1 1 1 1 1 1 1 1 626210000 480480000 145730000 13163 1267 12238 69626;69627;69628 84226;84227;84228;84229 84229 4 LYHILTPVPPEELR Unmodified 1675.9297 0.92974218 1933 Q5SY16 NOL9 Polynucleotide 5'-hydroxyl-kinase NOL9 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 1 3 44.473 44.971 3 0.0012729 19517 20211116_3435_TMUAki_TMT10x_P_F7 67.234 56.909 4241500 7152800 116940 6190000 6767500 10726000 6104300 7334700 7414000 6311400 6267300 3950100 6670700 496010 6450600 6479400 10571000 6267100 7597900 7444400 6206200 6081300 2 2 2 2 2 2 2 2 2 2 2 4221000 7111700 115890 6153100 6746900 10707000 6084900 7298400 7377700 6284400 6236600 3931100 6632400 493330 6412900 6459600 10550000 6246800 7562100 7408500 6179500 6051600 1 1 1 1 1 1 1 1 1 1 1 20472 41079 1049.8 36915 20555 19098 19459 36297 36259 26986 30625 19069 38316 2676.8 37687 19745 20942 20316 35757 35952 26739 29717 1 1 1 1 1 1 1 1 1 1 1 534890000 533500000 1396800 13164 1933 12239 69629;69630;69631;69632 84230;84231;84232;84233 84230 4 LYHNEVEIEK Unmodified 1272.635 0.63501672 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 0 By MS/MS 4 0 1 1 40.216 40.414 3 1.8553E-07 10941 20211116_3442_TMUAki_TMT10x_S_F4 108.7 76.173 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13165 1723 12240 69633 84234 84234 1 LYIEFVK Unmodified 910.51641 0.51640513 1687 Q14165 MLEC Malectin yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 69.885 70.064 2 0.010369 24075 20211116_3446_TMUAki_TMT10x_S_F7 97.602 43.892 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13166 1687 12241 69634;69635 84235;84236 84236 2 LYIGLAGLATDVQTVAQR Unmodified 1888.0418 0.04181182 1112 P49720 PSMB3 Proteasome subunit beta type-3 yes yes 0 0 0 0 By MS/MS 2 0 1 1 79.421 79.397 2 2.9404E-05 26224 20211116_3440_TMUAki_TMT10x_S_F2 85.813 67.949 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13167 1112 12242 69636 84237 84237 1 LYIGNLNESVTPADLEK Unmodified 1874.9626 0.96255845 3032 Q9NZI8;Q9NZI8-2 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.42 1.5 1 2 3 6 5 6 1 14 10 74.194 74.191 2;3;4 2.1606E-60 23340 20211116_3434_TMUAki_TMT10x_P_F6 289.31 253.65 139600000 237260000 820790 227550000 167380000 228990000 172020000 160800000 148120000 163800000 180680000 129970000 221350000 10693000 232840000 160550000 231660000 173500000 167020000 152890000 159850000 173290000 32 32 17 32 32 32 32 32 32 32 32 80358000 133490000 540750 128100000 89437000 166160000 103850000 92746000 84623000 95101000 103860000 74818000 124540000 6363500 131640000 86091000 165270000 103990000 98073000 87613000 92784000 99591000 19 19 12 19 19 19 19 19 19 19 19 59243000 103770000 280040 99444000 77944000 62836000 68169000 68055000 63498000 68694000 76822000 55157000 96810000 4329200 101210000 74459000 66389000 69514000 68950000 65276000 67064000 73695000 13 13 5 13 13 13 13 13 13 13 13 48520000000 24981000000 23539000000 13168 3032 12243 69637;69638;69639;69640;69641;69642;69643;69644;69645;69646;69647;69648;69649;69650;69651;69652;69653;69654;69655;69656;69657;69658;69659;69660 84238;84239;84240;84241;84242;84243;84244;84245;84246;84247;84248;84249;84250;84251;84252;84253;84254;84255;84256;84257;84258;84259;84260;84261;84262;84263;84264;84265;84266;84267;84268;84269;84270;84271 84248 34 LYIGNLSENAAPSDLESIFK Unmodified 2180.1001 0.10011456 86 O00425 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 5.92 1.33 1 1 2 4 4 1 8 5 79.847 79.858 2;3 1.0659E-24 28208 20211116_3446_TMUAki_TMT10x_S_F7 176.58 149.91 33964000 57173000 403890 49657000 42491000 52346000 45377000 36628000 36774000 39277000 43568000 31627000 53320000 3269400 51229000 40837000 52807000 45611000 38113000 38029000 38250000 41818000 11 11 8 11 11 11 11 11 11 11 11 17349000 28044000 145140 23523000 16305000 31185000 20736000 17425000 18149000 19173000 20742000 16155000 26151000 1516700 24431000 15751000 30988000 20722000 18464000 18669000 18654000 19929000 6 6 3 6 6 6 6 6 6 6 6 16615000 29129000 258760 26134000 26186000 21161000 24641000 19202000 18625000 20103000 22826000 15472000 27170000 1752700 26798000 25085000 21820000 24889000 19649000 19360000 19597000 21889000 5 5 5 5 5 5 5 5 5 5 5 16731000000 7634800000 9095900000 13169 86 12244 69661;69662;69663;69664;69665;69666;69667;69668;69669;69670;69671;69672;69673 84272;84273;84274;84275;84276;84277;84278;84279;84280;84281;84282;84283;84284 84284 13 LYINHTPPPLSK Unmodified 1378.7609 0.76088593 2258 Q8NI27;Q8NI27-2 THOC2 THO complex subunit 2 yes no 0 0 0 0 By MS/MS 2 0 1 1 47.067 47.013 3 0.00014773 13055 20211116_3440_TMUAki_TMT10x_S_F2 85.288 64.448 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13170 2258 12245 69674 84285 84285 1 LYITGGR Unmodified 778.43374 0.43373813 2331 Q8WZ60 KLHL6 Kelch-like protein 6 yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 35.982 36.41 2 0.0064752 9892 20211116_3435_TMUAki_TMT10x_P_F7 103.28 53.615 3997500 6199200 0 6383500 6574300 6068800 4247600 3636300 3714500 3446300 4895400 3721600 5785200 307700 6494500 6241300 6147300 4413600 3814200 3844100 3373700 4685800 3 3 0 3 3 3 3 3 3 3 3 2723000 4272400 0 4325600 5229000 5015700 2986400 2513800 2598100 2393500 3264900 2535000 3986800 215370 4419400 4954500 5010800 3134500 2678500 2683800 2342600 3128900 2 2 0 2 2 2 2 2 2 2 2 1274600 1926700 0 2057900 1345200 1053200 1261100 1122500 1116400 1052800 1630400 1186600 1798300 92331 2075100 1286800 1136400 1279100 1135700 1160300 1031100 1556900 1 1 0 1 1 1 1 1 1 1 1 306920000 177380000 129540000 13171 2331 12246 69675;69676;69677 84286;84287;84288 84286 3 LYKDDQLLDDGK Unmodified 1421.7038 0.70382456 1794 Q15370;Q15370-2 TCEB2 Transcription elongation factor B polypeptide 2 yes no 0 0 0 1 By MS/MS By matching 4.33 0.471 2 1 2 1 52.081 52.229 3 0.00021913 15289 20211116_3431_TMUAki_TMT10x_P_F4 88.282 65.704 9968700 14625000 199430 20090000 33451000 24344000 13662000 12399000 15591000 10545000 14109000 9283300 13667000 1341200 20173000 31589000 24269000 14952000 13154000 15724000 10375000 13657000 2 2 2 2 2 2 2 2 2 2 2 9968700 14625000 199430 20090000 33451000 24344000 13662000 12399000 15591000 10545000 14109000 9283300 13667000 1341200 20173000 31589000 24269000 14952000 13154000 15724000 10375000 13657000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1072100000 779440000 292680000 13172 1794 12247 69678;69679;69680 84289;84290 84289 2 LYKEELEQTYHAK Unmodified 1650.8253 0.82533668 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 1 By MS/MS By MS/MS 5.67 1.25 2 2 3 1 1 5 4 46.036 46.192 3;4 1.1794E-09 11864 20211116_3434_TMUAki_TMT10x_P_F6 137.68 93.89 42718000 66942000 698670 90991000 106380000 88621000 54942000 80161000 88919000 63303000 70063000 39779000 62554000 4992100 91092000 100750000 90237000 59472000 81425000 88304000 62519000 68171000 16 16 13 16 16 16 16 16 16 16 16 22515000 34309000 504080 46820000 87410000 72760000 37629000 43991000 47720000 33260000 33820000 20967000 32061000 3227600 47268000 82590000 71877000 41084000 45857000 47612000 32925000 33055000 8 8 7 8 8 8 8 8 8 8 8 20204000 32633000 194600 44171000 18971000 15861000 17313000 36171000 41199000 30043000 36244000 18812000 30493000 1764500 43824000 18156000 18361000 18388000 35567000 40692000 29594000 35116000 8 8 6 8 8 8 8 8 8 8 8 7045500000 5429600000 1615800000 13173 748 12248 69681;69682;69683;69684;69685;69686;69687;69688;69689 84291;84292;84293;84294;84295;84296;84297;84298;84299;84300;84301;84302;84303;84304;84305;84306 84295 16 LYKLELEQTYQAK Unmodified 1625.8665 0.86647322 1505 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 58.395 58.751 3 1.9633E-19 17180 20211116_3447_TMUAki_TMT10x_S_F8 192.39 165.06 52855000 86497000 354740 84234000 71887000 87076000 59877000 77790000 72262000 74631000 71523000 49215000 80703000 4820300 86135000 68638000 88323000 61747000 79466000 72946000 73019000 69019000 6 6 2 6 6 6 6 6 6 6 6 24707000 39512000 354740 39547000 38027000 58180000 32187000 36606000 34751000 35357000 32448000 23007000 36869000 2554600 40621000 36336000 57636000 33033000 38270000 35160000 34583000 31373000 3 3 2 3 3 3 3 3 3 3 3 28148000 46985000 0 44687000 33860000 28896000 27690000 41184000 37511000 39275000 39075000 26207000 43834000 2265800 45514000 32302000 30687000 28713000 41195000 37786000 38436000 37646000 3 3 0 3 3 3 3 3 3 3 3 4810200000 2305300000 2504900000 13174 1505 12249 69690;69691;69692;69693 84307;84308;84309;84310;84311;84312 84312 6 LYLDELEGGGNPGASCK Unmodified 1778.8145 0.814514 2874 Q9HD26;Q9HD26-2 GOPC Golgi-associated PDZ and coiled-coil motif-containing protein yes no 0 0 0 0 By MS/MS 4 0 1 1 64.461 64.304 3 4.6839E-10 20732 20211116_3442_TMUAki_TMT10x_S_F4 111.43 98.666 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13175 2874 12250 69694 84313 84313 1 LYLEDDDPVQAEAYINR Unmodified 2022.9535 0.95345032 2659 Q9BT78;Q9BT78-2 COPS4 COP9 signalosome complex subunit 4 yes no 0 0 0 0 By MS/MS By MS/MS 1.17 0.373 5 1 4 2 70.219 70.094 2;3 6.6681E-53 24236 20211116_3439_TMUAki_TMT10x_S_F1 270.21 262.29 10559000 18529000 54695 16443000 12473000 19002000 13041000 12384000 11384000 12569000 14047000 9831300 17282000 896130 16961000 11973000 19052000 13147000 12931000 11748000 12268000 13468000 6 6 3 6 6 6 6 6 6 6 6 7129600 12486000 54695 10841000 7816600 14831000 8860700 8504000 7540500 8345900 9253500 6638600 11644000 641540 11235000 7523800 14721000 8892400 8960900 7789700 8157600 8873500 4 4 3 4 4 4 4 4 4 4 4 3429300 6043500 0 5602600 4656100 4170900 4180000 3879900 3843600 4223300 4793500 3192700 5637600 254590 5725300 4449500 4330800 4254500 3969800 3958600 4110500 4594700 2 2 0 2 2 2 2 2 2 2 2 2800500000 1807700000 992870000 13176 2659 12251 69695;69696;69697;69698;69699;69700 84314;84315;84316;84317;84318;84319;84320 84320 7 LYLEREEYGK Unmodified 1298.6507 0.65066678 1300 P61201;P61201-2 COPS2 COP9 signalosome complex subunit 2 yes no 0 0 0 1 By MS/MS 4 0 1 1 43.536 43.751 3 4.5916E-05 12238 20211116_3442_TMUAki_TMT10x_S_F4 96.756 74.905 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13177 1300 12252 69701 84321 84321 1 LYLGGNR Unmodified 791.42899 0.42898711 23 A6NIK2 LRRC10B Leucine-rich repeat-containing protein 10B yes yes 0 0 0 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 31.14 31.383 2 0.0064502 6085 20211116_3436_TMUAki_TMT10x_P_F8 103.41 56.364 638830 1007900 2665.9 970780 980980 996360 706210 618190 630150 597170 754840 594770 940310 48931 993360 933400 1005000 728350 646990 648820 584100 724310 9 9 2 9 9 9 9 9 9 9 9 524580 829720 209.07 807970 869470 910370 588290 514480 529530 515750 623160 488400 774140 39472 827330 826310 912210 609610 543100 544600 503650 598240 7 7 1 7 7 7 7 7 7 7 7 114250 178140 2456.8 162810 111510 85994 117920 103710 100610 81427 131680 106380 166170 9459 166030 107090 92741 118740 103890 104220 80444 126060 2 2 1 2 2 2 2 2 2 2 2 7804600 5468700 2335900 13178 23 12253 69702;69703;69704;69705 84322;84323;84324;84325;84326;84327;84328;84329;84330 84328 9 LYLIDLAGSEDNRR Unmodified 1633.8424 0.84238373 1734 Q14807;Q14807-2 KIF22 Kinesin-like protein KIF22 yes no 0 0 0 1 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 61.166 61.413 3 6.2784E-14 18556 20211116_3445_TMUAki_TMT10x_S_F6 149.71 125.36 23455000 34463000 12196 38531000 28692000 29969000 21967000 21219000 21239000 21313000 25588000 21836000 32173000 1679300 38893000 27321000 30862000 22611000 22018000 21793000 20811000 24549000 3 3 1 3 3 3 3 3 3 3 3 13933000 20533000 12196 22321000 19691000 23076000 13429000 12992000 12587000 13019000 15561000 12972000 19166000 1075400 22656000 18713000 23235000 13923000 13719000 12948000 12714000 14919000 2 2 1 2 2 2 2 2 2 2 2 9521600 13930000 0 16210000 9001300 6892600 8538300 8226800 8651500 8294000 10027000 8864100 13007000 603930 16237000 8607600 7626400 8688500 8299200 8845300 8097600 9630100 1 1 0 1 1 1 1 1 1 1 1 1400100000 864620000 535500000 13179 1734 12254 69706;69707;69708 84331;84332;84333 84333 3 LYLINSPVVR Unmodified 1172.6917 0.69174374 1002 P41252 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 62.552 62.339 2 1.8245E-08 22160 20211116_3441_TMUAki_TMT10x_S_F3 170.95 113.49 30246000 52086000 226620 49798000 41753000 57314000 38068000 46334000 45961000 43498000 43789000 28163000 48593000 2816200 51076000 39952000 57677000 39051000 47579000 46335000 42599000 42309000 7 7 5 7 7 7 7 7 7 7 7 17016000 29641000 112490 28474000 27167000 43293000 25497000 26598000 26686000 24862000 24907000 15844000 27654000 1594000 29352000 26009000 42815000 25987000 27834000 27033000 24353000 24082000 4 4 2 4 4 4 4 4 4 4 4 13230000 22445000 114130 21324000 14586000 14021000 12571000 19736000 19276000 18636000 18882000 12319000 20939000 1222200 21724000 13942000 14863000 13064000 19745000 19302000 18246000 18227000 3 3 3 3 3 3 3 3 3 3 3 2207700000 1339700000 868000000 13180 1002 12255 69709;69710;69711;69712;69713;69714 84334;84335;84336;84337;84338;84339;84340 84339 7 LYLPPSTPDFSR Unmodified 1391.7085 0.70851601 1129 P49916;P49916-3 LIG3 DNA ligase 3 yes no 0 0 0 0 By MS/MS 8 0 1 1 64.089 64.259 2 0.0019954 19904 20211116_3436_TMUAki_TMT10x_P_F8 76.465 51.542 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13181 1129 12256 69715 84341 84341 1 LYLPVQNK Unmodified 973.55967 0.55966693 3344 Q9Y6A4 CFAP20 Cilia- and flagella-associated protein 20 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 30.771 30.532 3 0.093483 9251 20211116_3441_TMUAki_TMT10x_S_F3 30.57 0 1400700 1827400 0 1546200 1181100 1119600 1156800 628290 761560 653880 1528300 1304100 1704100 101380 1590900 1131100 1155900 1162500 664360 819260 637560 1450600 2 2 0 2 2 2 2 2 2 2 2 674150 653980 0 637020 607940 635430 436450 308300 347150 303800 800680 627670 610170 52192 651040 578430 640080 448910 329830 373170 296900 758350 1 1 0 1 1 1 1 1 1 1 1 726540 1173400 0 909220 573130 484220 720390 319990 414410 350070 727650 676410 1093900 49185 939860 552670 515820 713550 334530 446100 340660 692240 1 1 0 1 1 1 1 1 1 1 1 37889000 11530000 26359000 13182 3344 12257 69716;69717 84342 84342 1 LYLVDLAGSEK Unmodified 1206.6496 0.64960415 906;262 O60282;Q12840;P33176 KIF5C;KIF5A;KIF5B Kinesin heavy chain isoform 5C;Kinesin heavy chain isoform 5A;Kinesin-1 heavy chain no no 0 0 0 0 By MS/MS By MS/MS 6.43 0.728 1 2 4 4 3 71.113 71.284 2;3 4.8229E-16 22563 20211116_3445_TMUAki_TMT10x_S_F6 212.03 125.24 64343000 109630000 654970 108400000 79811000 102590000 76795000 70848000 68997000 71085000 82715000 59914000 102290000 6043400 110590000 76482000 104160000 77812000 73642000 71020000 69416000 79367000 10 10 7 10 10 10 10 10 10 10 10 38658000 63705000 484850 62863000 45738000 74862000 48972000 41853000 41319000 41613000 46659000 35998000 59441000 3688700 64369000 43962000 74782000 49269000 44212000 42560000 40651000 44845000 6 6 4 6 6 6 6 6 6 6 6 25685000 45920000 170120 45542000 34073000 27728000 27822000 28994000 27678000 29472000 36055000 23916000 42847000 2354700 46220000 32520000 29375000 28544000 29430000 28461000 28765000 34522000 4 4 3 4 4 4 4 4 4 4 4 3958800000 1933300000 2025400000 13183 262;906 12258 69718;69719;69720;69721;69722;69723;69724 84343;84344;84345;84346;84347;84348;84349;84350;84351;84352 84350 10 LYNNHEIR Unmodified 1057.5305 0.53049207 271;272 O60506;O60506-2;O60506-3;O60506-4;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 0 By MS/MS By MS/MS 3.6 1.02 1 1 2 1 4 1 29.884 29.754 2;3 0.00011362 6274 20211116_3431_TMUAki_TMT10x_P_F4 164.77 76.04 2550300 4210500 444830 4228200 4462000 6097400 2808000 3024200 3369700 1873300 2372800 2377800 3928900 647310 4340200 4263400 6027300 2952100 3195500 3368100 1877000 2319800 4 4 2 4 4 4 4 4 4 4 4 2266500 3731300 439550 3787100 4115300 5807100 2453700 2732900 3059300 1578500 1996100 2113600 3481900 617980 3889700 3930400 5722200 2594500 2899200 3048100 1589200 1958500 3 3 1 3 3 3 3 3 3 3 3 283740 479230 5284.7 441190 346770 290240 354320 291370 310380 294820 376700 264230 447030 29332 450510 333010 305020 357650 296290 320040 287790 361330 1 1 1 1 1 1 1 1 1 1 1 232110000 207110000 25002000 13184 271;272 12259 69725;69726;69727;69728;69729 84353;84354;84355;84356;84357 84355 5 LYNVVVDTEVTGKK Unmodified 1563.8508 0.85082315 423 O95347;O95347-2 SMC2 Structural maintenance of chromosomes protein 2 yes no 0 0 0 1 By MS/MS 7 0 1 1 57.642 58.165 3 2.9844E-06 19184 20211116_3446_TMUAki_TMT10x_S_F7 109.81 82.159 3682200 6022000 106660 6267200 4320300 3655300 3392800 4939000 5017000 4469300 4926000 3429300 5620100 413610 6337200 4125600 3913800 3540300 4942800 5029600 4384300 4754800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3682200 6022000 106660 6267200 4320300 3655300 3392800 4939000 5017000 4469300 4926000 3429300 5620100 413610 6337200 4125600 3913800 3540300 4942800 5029600 4384300 4754800 1 1 1 1 1 1 1 1 1 1 1 448470000 0 448470000 13185 423 12260 69730 84358 84358 1 LYPAAVDTIVAIMAEGK Unmodified 1760.9383 0.93825795 3168 Q9ULC4;Q9ULC4-2;Q9ULC4-3 MCTS1 Malignant T-cell-amplified sequence 1 yes no 0 0 0 0 By MS/MS By MS/MS 5 3 1 1 1 1 82.705 82.71 3 6.2308E-11 27593 20211116_3440_TMUAki_TMT10x_S_F2 124.09 105.96 242290 385070 0 401590 268280 467640 301520 217170 223810 244170 281050 225580 359380 19497 409510 258010 466700 301700 234250 233120 237360 269350 1 1 0 1 1 1 1 1 1 1 1 242290 385070 0 401590 268280 467640 301520 217170 223810 244170 281050 225580 359380 19497 409510 258010 466700 301700 234250 233120 237360 269350 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21266000 21266000 0 13186 3168 12261 69731;69732 84359;84360 84360 2 LYPAAVDTIVAIMAEGK Oxidation (M) 1776.9332 0.93317257 3168 Q9ULC4;Q9ULC4-2;Q9ULC4-3 MCTS1 Malignant T-cell-amplified sequence 1 yes no 0 0 1 0 By matching By MS/MS 2 0 2 1 1 82.851 82.846 3 5.8667E-11 27623 20211116_3440_TMUAki_TMT10x_S_F2 126.48 106.1 1776200 2932000 35347 2843000 2200000 1486300 2370400 848870 800920 1043400 1952700 1654000 2735500 186130 2886400 2115900 1583500 2346900 901070 924340 1011100 1848000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1776200 2932000 35347 2843000 2200000 1486300 2370400 848870 800920 1043400 1952700 1654000 2735500 186130 2886400 2115900 1583500 2346900 901070 924340 1011100 1848000 1 1 1 1 1 1 1 1 1 1 1 214270000 35208000 179070000 13187 3168 12261 69733;69734 84361 84361 3175 1 LYPEGLAQLAR Unmodified 1229.6768 0.67682195 1312 P61421 ATP6V0D1 V-type proton ATPase subunit d 1 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.707 1 2 1 1 3 63.125 63.499 2 2.0196E-06 20786 20211116_3435_TMUAki_TMT10x_P_F7 129.83 101.4 19970000 35503000 603330 34001000 23891000 28269000 21311000 22209000 22110000 23282000 25779000 18599000 33122000 2272900 34707000 22880000 29016000 21776000 22918000 22589000 22695000 24754000 4 4 4 4 4 4 4 4 4 4 4 7349000 12804000 158520 11776000 7011700 13361000 7492700 7020000 7397800 7324100 8724700 6843800 11943000 752290 12110000 6744800 13371000 7572100 7466600 7577200 7140600 8375300 1 1 1 1 1 1 1 1 1 1 1 12621000 22699000 444810 22225000 16880000 14908000 13818000 15189000 14712000 15958000 17054000 11755000 21179000 1520600 22597000 16135000 15645000 14204000 15452000 15011000 15554000 16379000 3 3 3 3 3 3 3 3 3 3 3 2337200000 975420000 1361800000 13188 1312 12262 69735;69736;69737;69738 84362;84363;84364;84365;84366 84362 5 LYPFQCFLAHDQAVR Unmodified 1863.909 0.90902351 2295 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 69.167 68.868 3 1.8033E-19 23213 20211116_3429_TMUAki_TMT10x_P_F2 166.64 150.15 17298000 28853000 391010 26712000 19179000 29653000 19479000 20748000 16783000 20467000 21041000 16109000 26915000 1824900 27445000 18421000 29827000 19659000 21536000 17343000 20000000 20166000 6 6 6 6 6 6 6 6 6 6 6 12304000 19991000 344700 18544000 12161000 23758000 13579000 14728000 12079000 14411000 14536000 11459000 18649000 1339400 19098000 11717000 23678000 13653000 15420000 12441000 14088000 13946000 4 4 4 4 4 4 4 4 4 4 4 4993500 8861500 46309 8167200 7017400 5895200 5899800 6020500 4703700 6055500 6505400 4649800 8266100 485500 8347000 6703300 6148600 6005800 6116000 4901400 5912700 6219800 2 2 2 2 2 2 2 2 2 2 2 2310100000 1232600000 1077500000 13189 2295 12263 69739;69740;69741;69742 84367;84368;84369;84370;84371;84372 84367 6 LYPGSVYGR Unmodified 1010.5185 0.5185304 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 44.554 44.532 2 1.8264E-05 11789 20211116_3428_TMUAki_TMT10x_P_F1 157.33 126.72 12521000 19621000 160100 23265000 22626000 20632000 14612000 13967000 14976000 12940000 16964000 11659000 18322000 1285500 23437000 21500000 21031000 15252000 14506000 15290000 12680000 16303000 6 6 3 6 6 6 6 6 6 6 6 8053000 12449000 147550 15076000 18605000 17320000 10903000 8588600 9391500 8018700 10779000 7499100 11626000 940700 15228000 17654000 17310000 11416000 9155900 9669600 7854900 10355000 3 3 2 3 3 3 3 3 3 3 3 4468300 7172600 12545 8189200 4020300 3311500 3709200 5378600 5584900 4921400 6184900 4160300 6696600 344840 8209600 3845800 3720800 3836700 5350600 5620900 4825300 5947800 3 3 1 3 3 3 3 3 3 3 3 790680000 494340000 296350000 13190 1723 12264 69743;69744;69745;69746 84373;84374;84375;84376;84377;84378 84373 6 LYPNMTAVLLHNTQLDQR Unmodified 2126.0943 0.094258096 2272 Q8TCS8 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial yes yes 0 0 0 0 By MS/MS 2 0 2 2 69.439 69.138 3 0.0040203 23396 20211116_3429_TMUAki_TMT10x_P_F2 59.585 46.182 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13191 2272 12265 69747;69748 84379;84380 84379 2 LYPWGVVEVENPEHNDFLK Unmodified 2284.1164 0.11643333 1752 Q15019;Q15019-2;Q15019-3 SEPT2 Septin-2 yes no 0 0 0 0 By MS/MS By MS/MS 5 1 2 2 3 1 77.327 77.297 3 1.5127E-12 24647 20211116_3434_TMUAki_TMT10x_P_F6 132.59 111.78 15207000 24956000 314070 24990000 16504000 20127000 19228000 9544100 9039400 11057000 16968000 14162000 23287000 1571700 25419000 15912000 20566000 19046000 10283000 9923200 10737000 16123000 3 3 3 3 3 3 3 3 3 3 3 9602400 15537000 235240 15333000 10360000 15274000 12407000 6280000 5752300 6952200 10385000 8942500 14497000 1025900 15656000 9999600 15362000 12272000 6859100 6307500 6762100 9875000 2 2 2 2 2 2 2 2 2 2 2 5605000 9418800 78835 9656900 6143700 4852200 6821400 3264100 3287100 4104900 6582100 5219400 8789600 545710 9763000 5912700 5203700 6774400 3424000 3615700 3974500 6247500 1 1 1 1 1 1 1 1 1 1 1 1959400000 1061000000 898340000 13192 1752 12266 69749;69750;69751;69752 84381;84382;84383;84384;84385 84383 5 LYQGINQLPNVIQALEK Unmodified 1940.0731 0.073111949 1027 P43246;P43246-2 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 0 0 By MS/MS By MS/MS 3 2.53 1 3 1 3 2 79.942 79.932 2;3 1.6468E-45 26457 20211116_3440_TMUAki_TMT10x_S_F2 212.9 194.12 16685000 27334000 90006 26447000 16512000 22579000 19112000 11902000 11577000 14420000 18304000 15536000 25502000 1373300 26985000 15897000 23001000 19017000 12715000 12346000 13980000 17449000 4 4 1 4 4 4 4 4 4 4 4 9620200 14382000 0 14988000 8018700 14778000 9561800 7287600 5831800 7746500 10107000 8956900 13422000 716120 15244000 7723700 14900000 9502800 7801300 6247800 7546800 9617600 2 2 0 2 2 2 2 2 2 2 2 7065100 12952000 90006 11459000 8492900 7800900 9550200 4613900 5745200 6673500 8197000 6578800 12080000 657150 11741000 8173300 8101000 9514100 4913600 6098300 6432800 7831500 2 2 1 2 2 2 2 2 2 2 2 2837900000 1800800000 1037100000 13193 1027 12267 69753;69754;69755;69756;69757 84386;84387;84388;84389;84390;84391 84391 6 LYQHEINLFK Unmodified 1303.6925 0.69247202 1508 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 56.201 56.343 3 0.00040826 16197 20211116_3447_TMUAki_TMT10x_S_F8 83.862 64.591 3745500 5323800 0 6611000 6376200 9009000 4778000 5015700 5001000 4586900 4924300 3487300 4972500 341820 6689200 6073200 8940200 4937000 5288300 5075100 4497500 4752600 1 1 0 1 1 1 1 1 1 1 1 3745500 5323800 0 6611000 6376200 9009000 4778000 5015700 5001000 4586900 4924300 3487300 4972500 341820 6689200 6073200 8940200 4937000 5288300 5075100 4497500 4752600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482460000 482460000 0 13194 1508 12268 69758;69759;69760 84392;84393;84394 84394 3 LYQPEYQEVSTEEQREEISGK Unmodified 2541.1871 0.18709167 3301 Q9Y4L1 HYOU1 Hypoxia up-regulated protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 3 1.18 1 3 2 3 1 5 5 52.417 52.354 3;4 4.495E-83 16993 20211116_3430_TMUAki_TMT10x_P_F3 289.22 262.63 17740000 31371000 199470 36028000 26870000 34083000 20077000 26797000 28816000 26157000 26560000 16518000 29290000 1670500 36396000 25598000 34678000 20991000 27594000 28853000 25572000 25692000 9 9 5 9 9 9 9 9 9 9 9 8965600 15925000 50280 18145000 18878000 26353000 14062000 13409000 14689000 13286000 12969000 8347400 14868000 830730 18477000 17976000 26050000 14535000 14283000 14855000 12981000 12564000 5 5 2 5 5 5 5 5 5 5 5 8774600 15446000 149190 17882000 7992800 7730000 6015700 13387000 14127000 12870000 13591000 8171000 14421000 839760 17919000 7622200 8628100 6456400 13310000 13998000 12591000 13127000 4 4 3 4 4 4 4 4 4 4 4 3272500000 2262000000 1010500000 13195 3301 12269 69761;69762;69763;69764;69765;69766;69767;69768;69769;69770 84395;84396;84397;84398;84399;84400;84401;84402;84403;84404;84405 84397 11 LYQQHGAGLFDVTR Unmodified 1603.8107 0.81068967 131 O14773;O14773-2 TPP1 Tripeptidyl-peptidase 1 yes no 0 0 0 0 By MS/MS 8 0 1 1 49.99 50.077 3 0.0012041 14188 20211116_3436_TMUAki_TMT10x_P_F8 68.173 50.737 2666900 4382400 0 4782700 5526300 6669600 3919400 3672400 4188300 3930400 3788400 2482700 4090700 205330 4879000 5254800 6610800 4067900 3892800 4234900 3828000 3666900 1 1 0 1 1 1 1 1 1 1 1 2666900 4382400 0 4782700 5526300 6669600 3919400 3672400 4188300 3930400 3788400 2482700 4090700 205330 4879000 5254800 6610800 4067900 3892800 4234900 3828000 3666900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 210900000 210900000 0 13196 131 12270 69771 84406 84406 1 LYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD Oxidation (M) 3361.4867 0.48672086 615 P11142 HSPA8 Heat shock cognate 71 kDa protein yes yes 0 0 1 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 76.297 76.286 3 0.00092726 24618 20211116_3445_TMUAki_TMT10x_S_F6 44.75 42.208 1953100 3160600 0 3643000 2409600 2272600 2319200 1208900 958380 1425600 2031300 1818500 2950900 161680 3661900 2307800 2375800 2315000 1289300 1072600 1383400 1926300 2 2 0 2 2 2 2 2 2 2 2 731210 1197000 0 1313600 662160 1141800 829020 508120 371910 498710 719100 680820 1117400 59165 1329300 639070 1159600 818040 548320 410680 487460 682940 1 1 0 1 1 1 1 1 1 1 1 1221900 1963500 0 2329400 1747500 1130800 1490200 700830 586470 926880 1312200 1137700 1833500 102510 2332600 1668700 1216200 1497000 741020 661930 895930 1243400 1 1 0 1 1 1 1 1 1 1 1 1208600000 551810000 656790000 13197 615 12271 69772;69773 84407;84408 84408 617 2 LYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD Unmodified 3345.4918 0.49180624 615 P11142 HSPA8 Heat shock cognate 71 kDa protein yes yes 0 0 0 0 By MS/MS By MS/MS 6.17 0.687 1 3 2 1 5 78.471 78.479 3;4 0.018336 25522 20211116_3445_TMUAki_TMT10x_S_F6 37.468 33.798 8002700 13114000 159540 12977000 9943700 8476600 9036200 6461400 6204800 6534300 8625200 7452200 12236000 813360 13181000 9519600 8867700 9125600 6673300 6522100 6378700 8245500 5 5 4 5 5 5 5 5 5 5 5 1237400 1977000 5044.2 2363500 1082000 1481400 1323000 629860 606900 648550 1171800 1152200 1846200 105120 2370700 1043900 1544400 1307200 683930 668790 632630 1112900 1 1 1 1 1 1 1 1 1 1 1 6765200 11137000 154490 10614000 8861600 6995200 7713200 5831500 5597900 5885700 7453400 6300000 10390000 708240 10811000 8475800 7323300 7818400 5989400 5853300 5746100 7132500 4 4 3 4 4 4 4 4 4 4 4 6286400000 585340000 5701100000 13198 615 12271 69774;69775;69776;69777;69778;69779 84409;84410;84411;84412;84413 84413 5 LYQYPNFAGPHAALANK Unmodified 1873.9475 0.9475175 2723 Q9BY44;Q9BY44-3;Q9BY44-4 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 56.244 55.939 3 1.3223E-21 18449 20211116_3430_TMUAki_TMT10x_P_F3 165.33 150.18 6875900 12222000 32851 12096000 9659600 13199000 8547300 8767000 8706500 8440900 9038600 6402200 11404000 610930 12365000 9234200 13279000 8732900 9127600 8862200 8257300 8708900 3 3 2 3 3 3 3 3 3 3 3 4225700 7528400 16460 7437900 6770000 10866000 6284700 5536400 5550300 5080100 5534600 3934500 7024500 372580 7645600 6478300 10739000 6377500 5884400 5678000 4980300 5339600 2 2 1 2 2 2 2 2 2 2 2 2650200 4693600 16391 4658200 2889600 2332700 2262600 3230500 3156200 3360800 3504000 2467700 4379500 238350 4719900 2755900 2540000 2355500 3243200 3184200 3277000 3369400 1 1 1 1 1 1 1 1 1 1 1 2037600000 1005600000 1031900000 13199 2723 12272 69780;69781 84414;84415;84416 84414 3 LYRETNEPVK Unmodified 1247.651 0.65100113 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 33.414 33.459 3 2.7256E-05 6589 20211116_3444_TMUAki_TMT10x_S_F5 132.32 94.302 4658400 7731300 20803 7654700 7941400 6980600 5258400 2715100 3863600 3264600 5278700 4337600 7213900 448770 7804400 7548200 7057100 5430900 2992200 4041800 3165700 5048400 4 4 2 4 4 4 4 4 4 4 4 4222100 6955800 20803 6934200 7367900 6673900 4740400 2471600 3499300 2971600 4771500 3931400 6490400 413490 7071600 6999900 6720600 4907300 2740000 3659400 2881600 4563500 2 2 2 2 2 2 2 2 2 2 2 436300 775530 0 720540 573490 306640 518060 243510 364320 293000 507200 406220 723450 35276 732760 548310 336500 523630 252250 382430 284120 484850 2 2 0 2 2 2 2 2 2 2 2 299190000 280170000 19029000 13200 647 12273 69782;69783;69784 84417;84418;84419;84420 84420 4 LYRLPETPK Unmodified 1115.6339 0.63389451 872 P30419;P30419-2 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 yes no 0 0 0 1 By MS/MS By MS/MS 5 3.29 2 1 2 2 3 43.836 43.914 3 0.0039845 13624 20211116_3439_TMUAki_TMT10x_S_F1 74.267 38.91 4109200 6369200 5511 8025800 5196300 4616300 3789400 5556300 5841900 4753300 5910700 3825900 5949300 343210 8019700 4946300 4934300 3980800 5577800 5855700 4675400 5699700 3 3 1 3 3 3 3 3 3 3 3 933390 1357600 5511 1516400 2114900 2071000 1111200 1209900 1315800 1063700 1291700 869120 1267400 99068 1544000 2002900 2056200 1185900 1269200 1328800 1044900 1246800 1 1 1 1 1 1 1 1 1 1 1 3175800 5011600 0 6509500 3081400 2545400 2678200 4346400 4526000 3689600 4619000 2956800 4681900 244140 6475600 2943300 2878000 2794900 4308600 4526900 3630500 4452900 2 2 0 2 2 2 2 2 2 2 2 270430000 125060000 145370000 13201 872 12274 69785;69786;69787;69788;69789 84421;84422;84423;84424 84423 4 LYRPGSVAYVSR Unmodified 1366.7357 0.73573382 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 1 By MS/MS By MS/MS 2.75 0.829 2 1 1 2 2 37.479 37.409 3 6.1159E-12 12112 20211116_3441_TMUAki_TMT10x_S_F3 129.76 103.16 766480 1297200 50322 1399300 1780200 1720800 983120 1264800 1373700 924500 1187400 714050 1210800 124640 1425100 1689900 1723000 1051000 1298800 1373800 916940 1151200 2 2 2 2 2 2 2 2 2 2 2 611310 1029100 43786 1118600 1599300 1592300 848580 1036900 1105800 739970 944080 569520 960570 105330 1142000 1517300 1580400 907970 1073400 1107900 734930 915720 1 1 1 1 1 1 1 1 1 1 1 155170 268100 6535.8 280690 180820 128530 134550 227890 267900 184540 243360 144530 250220 19315 283190 172610 142560 143020 225390 265840 182010 235520 1 1 1 1 1 1 1 1 1 1 1 55848000 47790000 8057300 13202 1200 12275 69790;69791;69792;69793 84425;84426;84427;84428 84428 4 LYRVEYAK Unmodified 1040.5655 0.56548059 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 39.316 39.663 3 0.00080735 9331 20211116_3447_TMUAki_TMT10x_S_F8 106.42 58.14 3997500 6121400 61999 6243700 8439900 6842700 4220700 3563200 4270800 3428600 4924900 3722500 5712400 451420 6369900 7990300 6860300 4503400 3784300 4365900 3354100 4730600 3 3 3 3 3 3 3 3 3 3 3 3997500 6121400 61999 6243700 8439900 6842700 4220700 3563200 4270800 3428600 4924900 3722500 5712400 451420 6369900 7990300 6860300 4503400 3784300 4365900 3354100 4730600 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 110590000 110590000 0 13203 586 12276 69794;69795;69796 84429;84430;84431;84432 84432 4 LYSEDELPAEFK Unmodified 1439.682 0.68202649 3344 Q9Y6A4 CFAP20 Cilia- and flagella-associated protein 20 yes yes 0 0 0 0 By MS/MS By MS/MS 3 1.07 3 2 1 1 4 3 66.386 66.149 2;3 1.2059E-35 22697 20211116_3430_TMUAki_TMT10x_P_F3 243.53 207.57 2467900 4201100 24614 4069400 3668400 6266500 3706300 3374800 3524800 2972800 3311700 2298000 3919600 244360 4193600 3519900 6183400 3751900 3565200 3586200 2920000 3201300 1 1 1 1 1 1 1 1 1 1 1 2467900 4201100 24614 4069400 3668400 6266500 3706300 3374800 3524800 2972800 3311700 2298000 3919600 244360 4193600 3519900 6183400 3751900 3565200 3586200 2920000 3201300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1017700000 483200000 534520000 13204 3344 12277 69797;69798;69799;69800;69801;69802;69803 84433;84434;84435;84436;84437 84435 5 LYSESLAR Unmodified 937.4869 0.48689592 1133;884 P50395;P50395-2;P31150 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha no no 0 0 0 0 By MS/MS By MS/MS 4.4 1.56 1 3 1 2 2 1 4 6 38.876 38.915 2 0.0004623 10464 20211116_3433_TMUAki_TMT10x_P_F5 164.52 38.891 13328000 21685000 77395 24285000 27404000 20458000 15808000 13508000 15398000 12773000 18816000 12409000 20244000 1215300 24534000 25979000 20921000 16628000 14063000 15804000 12505000 18046000 11 11 7 11 11 11 11 11 11 11 11 7295500 11706000 26533 13133000 20905000 15690000 9129000 7334500 8326200 7282100 10180000 6791900 10928000 674830 13335000 19740000 15638000 9850800 7877300 8571400 7114200 9762600 5 5 3 5 5 5 5 5 5 5 5 6032200 9978700 50862 11153000 6499900 4768000 6678600 6173400 7071800 5490600 8636800 5616800 9315600 540470 11199000 6239100 5282700 6777200 6185300 7232700 5390500 8283100 6 6 4 6 6 6 6 6 6 6 6 1491600000 679710000 811920000 13205 1133;884 12278 69804;69805;69806;69807;69808;69809;69810;69811;69812;69813 84438;84439;84440;84441;84442;84443;84444;84445;84446;84447;84448;84449 84441 12 LYSILGTTLKDEGK Unmodified 1536.8399 0.83992412 307 O75083;O75083-3 WDR1 WD repeat-containing protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 69.036 69.133 3 7.4179E-30 21904 20211116_3436_TMUAki_TMT10x_P_F8 212.39 166.78 86365000 145410000 2909800 139960000 106780000 145710000 99674000 104750000 89407000 98402000 112250000 80436000 135660000 10158000 143260000 102380000 147170000 101160000 108380000 92216000 96366000 107580000 8 8 8 8 8 8 8 8 8 8 8 48341000 76127000 1807800 76671000 68282000 108090000 65685000 56034000 53123000 52000000 64361000 45023000 71036000 5971900 78648000 65516000 107000000 66374000 59478000 54992000 50952000 61739000 4 4 4 4 4 4 4 4 4 4 4 38024000 69279000 1102000 63293000 38498000 37627000 33989000 48719000 36284000 46402000 47889000 35413000 64622000 4186200 64608000 36867000 40164000 34783000 48905000 37224000 45414000 45837000 4 4 4 4 4 4 4 4 4 4 4 9951000000 5793900000 4157200000 13206 307 12279 69814;69815;69816;69817;69818;69819 84450;84451;84452;84453;84454;84455;84456;84457 84452 8 LYSILQGDSPTK Unmodified 1320.6925 0.6925316 156 O15042;O15042-2;O15042-3 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 0 0 0 0 By MS/MS 7 0 1 1 63.76 64.403 2 0.00040227 21189 20211116_3435_TMUAki_TMT10x_P_F7 85.417 56.07 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13207 156 12280 69820 84458 84458 1 LYSPSQIGAFVLMK Oxidation (M) 1568.8273 0.82725094 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 3.75 0.924 1 4 4 3 7 5 78.412 78.384 2;3 3.3463E-14 28577 20211116_3441_TMUAki_TMT10x_S_F3 151.66 135 75213000 132580000 782910 112720000 79966000 144960000 101120000 104010000 114760000 115560000 102870000 70030000 123640000 6238300 116880000 77203000 144770000 101890000 108160000 115730000 112380000 99606000 13 13 9 13 13 13 13 13 13 13 13 37230000 63630000 471780 55347000 43879000 89139000 50770000 48252000 54381000 55699000 50068000 34663000 59342000 2977700 57553000 42234000 87806000 51250000 51346000 55013000 54092000 48433000 6 6 4 6 6 6 6 6 6 6 6 37983000 68948000 311130 57378000 36087000 55824000 50352000 55757000 60383000 59859000 52805000 35367000 64293000 3260600 59329000 34969000 56964000 50639000 56816000 60721000 58292000 51174000 7 7 5 7 7 7 7 7 7 7 7 18883000000 10379000000 8504500000 13208 972 12281 69821;69822;69823;69824;69825;69826;69827;69828;69829;69830;69831;69832 84459;84460;84461;84462;84463;84464;84465;84466;84467;84468;84469;84470;84471 84465 1238 13 LYSPSQIGAFVLMK Unmodified 1552.8323 0.83233632 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 2 4 3 3 79.342 79.349 2;3 2.619E-19 26693 20211116_3433_TMUAki_TMT10x_P_F5 176.78 145.89 43377000 71996000 647350 75566000 44577000 51962000 60199000 23506000 18392000 29601000 47147000 40393000 67193000 4123400 76484000 43169000 53752000 58952000 25517000 21561000 28659000 44591000 7 7 4 7 7 7 7 7 7 7 7 22324000 36917000 188440 36838000 25762000 35818000 32257000 12884000 10285000 15735000 23171000 20787000 34447000 1998600 37571000 24872000 36036000 31700000 14342000 11882000 15251000 21954000 4 4 2 4 4 4 4 4 4 4 4 21053000 35079000 458910 38728000 18815000 16144000 27942000 10622000 8106900 13866000 23976000 19606000 32746000 2124800 38914000 18297000 17715000 27251000 11175000 9678500 13408000 22637000 3 3 2 3 3 3 3 3 3 3 3 5912700000 3126500000 2786200000 13209 972 12281 69833;69834;69835;69836;69837;69838 84472;84473;84474;84475;84476;84477;84478 84475 7 LYSVSYLLK Unmodified 1084.6168 0.61684746 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS 3 0 1 1 74.583 74.335 2 0.0039605 26989 20211116_3441_TMUAki_TMT10x_S_F3 77.355 48.194 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13210 755 12282 69839 84479 84479 1 LYTDFDEIRQEIENETER Unmodified 2299.0604 0.06043459 87 O00429;O00429-2;O00429-4;O00429-3;O00429-5;O00429-9;O00429-8;O00429-6 DNM1L Dynamin-1-like protein yes no 0 0 0 1 By MS/MS By MS/MS 1.25 0.433 3 1 3 1 78.529 78.507 3 3.3084E-64 27581 20211116_3439_TMUAki_TMT10x_S_F1 275.37 255.95 26351000 44464000 0 43291000 32229000 37129000 31207000 21591000 26196000 24176000 32375000 24527000 41485000 1164600 44155000 30806000 37856000 31553000 22814000 27088000 23505000 31040000 2 2 0 2 2 2 2 2 2 2 2 13291000 20391000 0 19336000 12178000 22610000 12777000 11694000 13704000 11112000 14786000 12370000 19023000 361680 19849000 11644000 22586000 12958000 12423000 13939000 10876000 14230000 1 1 0 1 1 1 1 1 1 1 1 13060000 24073000 0 23955000 20052000 14519000 18430000 9897400 12492000 13064000 17589000 12157000 22462000 802970 24305000 19161000 15270000 18595000 10391000 13149000 12628000 16810000 1 1 0 1 1 1 1 1 1 1 1 4208200000 2059500000 2148700000 13211 87 12283 69840;69841;69842;69843 84480;84481;84482;84483 84483 4 LYTLQDK Unmodified 879.47018 0.47018322 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS 6 0 1 1 48.391 48.548 2 0.0084064 13209 20211116_3445_TMUAki_TMT10x_S_F6 101.99 42.783 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13212 1092 12284 69844 84484 84484 1 LYTLVLTDPDAPSR Unmodified 1559.8195 0.81952302 867 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 0 0 0 0 By MS/MS By MS/MS 5.55 1.16 1 1 2 5 2 6 5 71.799 71.862 2;3 5.7775E-37 22771 20211116_3445_TMUAki_TMT10x_S_F6 240 216.02 23361000 39114000 151730 37567000 24812000 36528000 27516000 22394000 21727000 24501000 28053000 21751000 36492000 1871500 38418000 23854000 36958000 27590000 23545000 22581000 23842000 26866000 12 12 4 12 12 12 12 12 12 12 12 14655000 24120000 128560 23289000 16116000 27320000 17144000 14162000 13886000 15462000 17610000 13645000 22503000 1142100 23878000 15472000 27287000 17235000 15102000 14402000 15047000 16872000 8 8 2 8 8 8 8 8 8 8 8 8706100 14995000 23168 14278000 8696700 9208000 10372000 8231800 7840500 9038500 10444000 8106300 13989000 729390 14540000 8381400 9671300 10355000 8442900 8179600 8794200 9994000 4 4 2 4 4 4 4 4 4 4 4 5256100000 3273000000 1983100000 13213 867 12285 69845;69846;69847;69848;69849;69850;69851;69852;69853;69854;69855 84485;84486;84487;84488;84489;84490;84491;84492;84493;84494;84495;84496;84497;84498;84499;84500 84498 16 LYTLVLTDPDAPSRK Unmodified 1687.9145 0.91448604 867 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 0 0 0 1 By MS/MS By matching 7.67 0.471 1 2 2 1 61.471 61.772 3 3.4122E-20 18880 20211116_3436_TMUAki_TMT10x_P_F8 178.23 149.43 5290100 8944900 208110 9704400 8375700 12043000 6447000 5651700 5803800 5843200 6770600 4927100 8349400 675750 9881400 7995100 11980000 6620400 6074500 5966800 5698800 6501400 1 1 1 1 1 1 1 1 1 1 1 5290100 8944900 208110 9704400 8375700 12043000 6447000 5651700 5803800 5843200 6770600 4927100 8349400 675750 9881400 7995100 11980000 6620400 6074500 5966800 5698800 6501400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1738800000 1145100000 593660000 13214 867 12286 69856;69857;69858 84501 84501 1 LYTLVLTDPDAPSRKDPK Unmodified 2028.0892 0.089155943 867 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 0 0 0 2 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 57.039 57.219 4 1.4454E-23 18710 20211116_3446_TMUAki_TMT10x_S_F7 172.24 153.2 103730000 168000000 1153600 198430000 144490000 169670000 109280000 136340000 130300000 123810000 137820000 96590000 156880000 10166000 199850000 137720000 173870000 113340000 139930000 131910000 121440000 132720000 13 13 10 13 13 13 13 13 13 13 13 54811000 86850000 493770 101530000 98311000 130210000 68836000 75445000 71457000 67526000 71549000 51038000 81095000 5533600 102970000 93549000 129650000 71445000 79235000 72583000 66276000 69017000 8 8 5 8 8 8 8 8 8 8 8 48918000 81154000 659810 96898000 46178000 39455000 40448000 60898000 58848000 56286000 66275000 45552000 75784000 4632200 96881000 44174000 44220000 41898000 60697000 59326000 55162000 63703000 5 5 5 5 5 5 5 5 5 5 5 9782500000 5262500000 4520000000 13215 867 12287 69859;69860;69861;69862;69863;69864 84502;84503;84504;84505;84506;84507;84508;84509;84510;84511;84512;84513;84514 84511 13 LYTLVTYVPVTTFK Unmodified 1643.9174 0.91744615 1380 P62899;P62899-3;P62899-2 RPL31 60S ribosomal protein L31 yes no 0 0 0 0 By MS/MS By MS/MS 5.6 1.19 4 7 23 16 19 1 37 33 53.464 53.485 2;3 5.4188E-33 25699 20211116_3444_TMUAki_TMT10x_S_F5 227.94 185.61 355130000 585110000 3661900 536020000 364840000 442690000 394760000 245880000 259330000 277610000 364690000 330660000 545790000 30577000 548900000 350640000 452310000 394660000 260880000 273490000 269820000 348540000 61 61 42 61 61 61 61 61 61 61 61 181700000 292300000 2323100 272890000 162330000 285800000 192030000 127930000 135700000 145040000 181260000 169190000 272670000 16179000 279960000 156490000 286810000 191490000 138550000 142130000 140950000 173450000 33 33 27 33 33 33 33 33 33 33 33 173430000 292810000 1338800 263130000 202500000 156880000 202730000 117950000 123620000 132570000 183430000 161470000 273120000 14399000 268940000 194150000 165500000 203180000 122320000 131350000 128870000 175090000 28 28 15 28 28 28 28 28 28 28 28 92199000000 41499000000 50700000000 13216 1380 12288 69865;69866;69867;69868;69869;69870;69871;69872;69873;69874;69875;69876;69877;69878;69879;69880;69881;69882;69883;69884;69885;69886;69887;69888;69889;69890;69891;69892;69893;69894;69895;69896;69897;69898;69899;69900;69901;69902;69903;69904;69905;69906;69907;69908;69909;69910;69911;69912;69913;69914;69915;69916;69917;69918;69919;69920;69921;69922;69923;69924;69925;69926;69927;69928;69929;69930;69931;69932;69933;69934 84515;84516;84517;84518;84519;84520;84521;84522;84523;84524;84525;84526;84527;84528;84529;84530;84531;84532;84533;84534;84535;84536;84537;84538;84539;84540;84541;84542;84543;84544;84545;84546;84547;84548;84549;84550;84551;84552;84553;84554;84555;84556;84557;84558;84559;84560;84561;84562;84563;84564;84565;84566;84567;84568;84569;84570;84571;84572;84573;84574;84575;84576;84577;84578;84579;84580;84581;84582;84583;84584;84585;84586;84587;84588;84589;84590;84591;84592;84593 84566 79 LYTTMPVAK Oxidation (M) 1038.542 0.54196796 3224 Q9Y262;Q9Y262-2 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 0 0 1 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 42.844 43.098 2 0.0023703 13018 20211116_3446_TMUAki_TMT10x_S_F7 95.541 73.393 1522500 2602100 5885.7 2496500 1881500 1888300 1591300 1649600 1823200 1519000 2019000 1417600 2427600 128700 2545200 1796600 1955900 1636400 1685400 1851600 1488900 1941600 3 3 2 3 3 3 3 3 3 3 3 388390 713340 5519 691250 810910 924250 484760 462950 535180 417170 569950 361670 665540 43261 710230 769680 916820 510330 492610 543480 409320 548730 1 1 1 1 1 1 1 1 1 1 1 1134100 1888700 366.71 1805300 1070600 964080 1106500 1186700 1288000 1101800 1449100 1055900 1762100 85442 1835000 1026900 1039000 1126100 1192700 1308100 1079600 1392900 2 2 1 2 2 2 2 2 2 2 2 151140000 65231000 85912000 13217 3224 12289 69935;69936;69937 84594;84595 84595 3216 2 LYTVCDVALCVINSK Unmodified 1753.8743 0.87427749 1875 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 0 0 0 0 By MS/MS 2 0 1 1 79.427 79.411 3 9.3163E-10 27515 20211116_3429_TMUAki_TMT10x_P_F2 129.17 107.92 2993100 5507700 153150 4934000 2782600 5740300 3744900 2563400 2469200 2271600 3902600 2788000 5137200 387930 5086000 2701500 5726700 3708800 2757900 2618700 2230600 3720300 1 1 1 1 1 1 1 1 1 1 1 2993100 5507700 153150 4934000 2782600 5740300 3744900 2563400 2469200 2271600 3902600 2788000 5137200 387930 5086000 2701500 5726700 3708800 2757900 2618700 2230600 3720300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 858000000 858000000 0 13218 1875 12290 69938 84596 84596 1 LYVELHR Unmodified 928.51305 0.51305109 1510 Q04323;Q04323-2 UBXN1 UBX domain-containing protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.25 0.829 1 1 2 2 2 37.686 37.791 3 0.0022535 8946 20211116_3445_TMUAki_TMT10x_S_F6 105.39 44.603 921700 1394600 17288 1459500 1163500 1236000 979830 889850 945810 960210 1079700 858300 1301600 94038 1481000 1111900 1265200 1002400 924310 968440 934890 1037400 5 5 3 5 5 5 5 5 5 5 5 406900 593380 11043 653160 657830 767360 437580 424310 445530 432570 464890 378950 553910 47541 663810 625890 766980 455620 448970 453590 422130 447860 1 1 1 1 1 1 1 1 1 1 1 514800 801260 6244.7 806380 505690 468630 542260 465530 500280 527640 614820 479360 747680 46497 817230 486050 498170 546820 475340 514850 512770 589550 4 4 2 4 4 4 4 4 4 4 4 81143000 47780000 33364000 13219 1510 12291 69939;69940;69941;69942 84597;84598;84599;84600;84601;84602 84602 6 LYVELHRGEELGGGQDPVQLLSGFPR Unmodified 2865.4773 0.47734087 1510 Q04323;Q04323-2 UBXN1 UBX domain-containing protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 7 1 1 3 2 3 3 73.572 73.646 3;4 2.2845E-45 25604 20211116_3446_TMUAki_TMT10x_S_F7 189.02 170.92 27888000 46808000 349030 44621000 32195000 48090000 35992000 31008000 27416000 30237000 36207000 25968000 43669000 2538300 45727000 30976000 48393000 36044000 32366000 28578000 29563000 34656000 9 9 6 9 9 9 9 9 9 9 9 19101000 30816000 155610 29494000 19970000 37767000 24285000 22384000 19650000 21600000 24734000 17786000 28749000 1658200 30306000 19260000 37618000 24264000 23511000 20374000 21128000 23703000 6 6 4 6 6 6 6 6 6 6 6 8786800 15992000 193410 15127000 12225000 10323000 11707000 8624300 7766000 8636900 11473000 8182200 14919000 880080 15421000 11716000 10775000 11780000 8854700 8204600 8434700 10953000 3 3 2 3 3 3 3 3 3 3 3 8397300000 3563700000 4833600000 13220 1510 12292 69943;69944;69945;69946;69947;69948 84603;84604;84605;84606;84607;84608;84609;84610;84611;84612 84611 10 LYVIGGNHFR Unmodified 1174.6247 0.6247268 3063 Q9P2J3;Q9P2N7;Q9P2N7-2;Q9P2N7-3;Q9P2N7-4;Q9P2N7-5 KLHL9;KLHL13 Kelch-like protein 9;Kelch-like protein 13 yes no 0 0 0 0 By MS/MS 3 0 1 1 44.929 44.594 3 7.5769E-07 14907 20211116_3441_TMUAki_TMT10x_S_F3 152.34 118.42 671240 1049100 31634 1208700 546560 609590 577750 817510 857220 744320 908970 625230 979490 83386 1212900 526770 662640 593060 818500 861680 729960 875250 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 671240 1049100 31634 1208700 546560 609590 577750 817510 857220 744320 908970 625230 979490 83386 1212900 526770 662640 593060 818500 861680 729960 875250 1 1 1 1 1 1 1 1 1 1 1 60228000 0 60228000 13221 3063 12293 69949 84613 84613 1 LYVIYKVPQVR Unmodified 1376.818 0.81800688 584 P09661 SNRPA1 U2 small nuclear ribonucleoprotein A' yes yes 0 0 0 1 By MS/MS 7 0 1 1 58.589 59.32 3 6.1837E-05 19076 20211116_3435_TMUAki_TMT10x_P_F7 93.096 70.266 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13222 584 12294 69950 84614 84614 1 MAALQYMLPLK 2 Oxidation (M) 1309.6774 0.67741558 3374 yes yes 0 0 2 0 By MS/MS By MS/MS 6.67 2.56 1 1 4 3 3 47.027 47.096 3 0.004093 12920 20211116_3436_TMUAki_TMT10x_P_F8 63.283 39.855 + 11464000 19165000 75386 21959000 16378000 20302000 12236000 20406000 22900000 18232000 18450000 10674000 17893000 1071400 22180000 15604000 20787000 12958000 20677000 22672000 17896000 17936000 5 5 4 5 5 5 5 5 5 5 5 4688200 7899400 37071 9168100 11281000 14366000 6993700 9144600 10364000 8222600 7815600 4365400 7375800 515570 9341100 10712000 14197000 7422600 9533500 10306000 8068600 7618300 2 2 2 2 2 2 2 2 2 2 2 6775400 11265000 38315 12791000 5097000 5936100 5242500 11262000 12536000 10010000 10634000 6308700 10517000 555870 12839000 4892000 6589800 5535900 11144000 12367000 9827700 10317000 3 3 2 3 3 3 3 3 3 3 3 2100800000 1143400000 957430000 13223 3374 12295 69951;69952;69953;69954;69955;69956 84615;84616;84617 84615 3305;3306 3 MAAPIDR Unmodified 772.39016 0.39015876 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS 5 0 1 1 30.388 30.506 2 0.073962 6125 20211116_3444_TMUAki_TMT10x_S_F5 60.294 19.721 129690 248880 1140 230290 153460 119350 177030 112730 112980 112050 166220 120760 232160 12147 234590 147810 128280 176350 114930 119630 109460 158700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 129690 248880 1140 230290 153460 119350 177030 112730 112980 112050 166220 120760 232160 12147 234590 147810 128280 176350 114930 119630 109460 158700 1 1 1 1 1 1 1 1 1 1 1 2729300 0 2729300 13224 1171 12296 69957 84618 84618 1 MACGAEFSMIMDCK 3 Oxidation (M) 1697.6228 0.62275553 3056 Q9P258 RCC2 Protein RCC2 yes yes 0 0 3 0 By MS/MS By MS/MS 4 0 2 1 1 46.309 46.467 3 0.0077238 12935 20211116_3431_TMUAki_TMT10x_P_F4 57.106 55.961 4783300 7899800 36341 8758600 6204200 7506200 4740500 7009600 7649900 6334000 6835100 4453800 7374500 417540 8855900 5912200 7712900 4975100 7131700 7626300 6213900 6618800 2 2 1 2 2 2 2 2 2 2 2 2417300 3451300 0 3779600 4483500 5778900 3164100 3467600 3715000 3060600 3446700 2250500 3221600 196540 3862500 4263700 5711900 3295500 3630100 3745700 3005900 3333200 1 1 0 1 1 1 1 1 1 1 1 2366100 4448500 36341 4979000 1720700 1727300 1576400 3542000 3935000 3273300 3388500 2203300 4152900 220990 4993300 1648500 2001000 1679600 3501700 3880600 3208000 3285700 1 1 1 1 1 1 1 1 1 1 1 1012700000 706160000 306530000 13225 3056 12297 69958;69959 84619;84620 84619 3100;3101;3102 2 MADEAILQER Oxidation (M) 1190.5601 0.56013721 2865 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 yes yes 0 0 1 0 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 37.957 37.795 2 0.0016448 10632 20211116_3429_TMUAki_TMT10x_P_F2 94.309 65.148 1000500 1598600 2397.7 1987500 2770800 1934200 1196000 1383100 1683600 1080000 1583600 931490 1493100 101650 1999300 2616800 1961300 1310600 1425000 1687900 1067200 1530700 2 2 1 2 2 2 2 2 2 2 2 601240 947940 0 1216000 2404700 1623000 820410 827590 1018200 642720 973500 559750 885530 66778 1227600 2265300 1610400 921130 876040 1025600 635330 940490 1 1 0 1 1 1 1 1 1 1 1 399230 650630 2397.7 771550 366170 311210 375630 555510 665380 437240 610070 371740 607550 34871 771680 351480 350920 389490 548940 662270 431910 590220 1 1 1 1 1 1 1 1 1 1 1 75858000 43874000 31984000 13226 2865 12298 69960;69961;69962 84621;84622;84623 84622 2989 3 MADKDGDLIATKEEFTAFLHPEEYDYMK Oxidation (M) 3322.505 0.50499669 252 O43852;O43852-3;O43852-4;O43852-2;O43852-10;O43852-6;O43852-15 CALU Calumenin yes no 0 0 1 2 By MS/MS 5 0 1 1 77.426 77.445 5 0.0036675 25890 20211116_3433_TMUAki_TMT10x_P_F5 51.844 42.382 7181200 11192000 0 11164000 6644500 11227000 8511300 3553300 3677500 5485700 6933600 6685700 10443000 502020 11392000 6412400 11261000 8386200 4057900 4068300 5278100 6587800 1 1 0 1 1 1 1 1 1 1 1 7181200 11192000 0 11164000 6644500 11227000 8511300 3553300 3677500 5485700 6933600 6685700 10443000 502020 11392000 6412400 11261000 8386200 4057900 4068300 5278100 6587800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1408000000 1408000000 0 13227 252 12299 69963 84624 84624 200 1 MADLHAVPR Oxidation (M) 1024.5124 0.51239916 1692 Q14195-2;Q14195 DPYSL3 Dihydropyrimidinase-related protein 3 yes no 0 0 1 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 29.424 29.447 3 0.045669 6154 20211116_3431_TMUAki_TMT10x_P_F4 42.338 28.343 638400 1078900 11877 1088600 677660 738890 622720 353040 1585100 492140 609580 594500 1006800 64546 1104700 649110 765640 664310 382580 1535900 474920 618240 2 2 2 2 2 2 2 2 2 2 2 579320 887170 2714.1 945310 604370 669020 521270 298890 1516200 424320 529090 539420 828040 50910 956130 577570 690280 563890 326330 1463900 409250 540950 1 1 1 1 1 1 1 1 1 1 1 59086 191730 9162.4 143330 73291 69876 101450 54144 68950 67816 80498 55084 178730 13637 148540 71538 75362 100420 56253 71976 65670 77296 1 1 1 1 1 1 1 1 1 1 1 34764000 32938000 1825400 13228 1692 12300 69964;69965;69966 84625 84625 2268 1 MADLHAVPR Unmodified 1008.5175 0.51748454 1692 Q14195-2;Q14195 DPYSL3 Dihydropyrimidinase-related protein 3 yes no 0 0 0 0 By MS/MS 5 0 1 1 33.452 33.63 3 0.0034248 6914 20211116_3444_TMUAki_TMT10x_S_F5 71.349 49.901 178130 314210 1282 306220 199070 136840 178220 180370 156620 143500 204890 165870 293160 16256 310430 190430 150830 181200 180080 162000 141670 196160 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 178130 314210 1282 306220 199070 136840 178220 180370 156620 143500 204890 165870 293160 16256 310430 190430 150830 181200 180080 162000 141670 196160 1 1 1 1 1 1 1 1 1 1 1 25814000 0 25814000 13229 1692 12300 69967 84626 84626 1 MAEDEAETIGNLIEECGGLEK Unmodified 2307.0246 0.02464271 106 O00629 KPNA4 Importin subunit alpha-3 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 79.599 79.599 3 1.9409E-14 26117 20211116_3428_TMUAki_TMT10x_P_F1 136.58 127.05 3884700 6006700 0 5931200 3524100 5684400 4135300 2631200 2272100 3219900 3911700 3616500 5604600 251960 6052500 3390200 5737500 4105000 2846900 2451200 3120500 3722700 1 1 0 1 1 1 1 1 1 1 1 3884700 6006700 0 5931200 3524100 5684400 4135300 2631200 2272100 3219900 3911700 3616500 5604600 251960 6052500 3390200 5737500 4105000 2846900 2451200 3120500 3722700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 880280000 880280000 0 13230 106 12301 69968;69969 84627;84628 84627 2 MAEDELFNRYER Oxidation (M) 1587.6988 0.69875596 1267 P57740;P57740-3;P57740-2 NUP107 Nuclear pore complex protein Nup107 yes no 0 0 1 1 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 42.04 42.095 3 0.017527 11235 20211116_3440_TMUAki_TMT10x_S_F2 61.03 46.339 948650 1400300 2972.4 1778800 2159100 2058900 1079700 1200900 1284400 1037000 1240300 883260 1308000 91987 1792100 2042900 2060900 1158000 1259400 1296100 1019600 1197900 2 2 1 2 2 2 2 2 2 2 2 948650 1400300 2972.4 1778800 2159100 2058900 1079700 1200900 1284400 1037000 1240300 883260 1308000 91987 1792100 2042900 2060900 1158000 1259400 1296100 1019600 1197900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 66611000 66611000 0 13231 1267 12302 69970;69971;69972 84629;84630;84631;84632 84632 1708 4 MAEIGEHVAPSEAANSLEQAQAAAER Oxidation (M) 2695.2508 0.25077133 831 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 0 0 1 0 By MS/MS 2 0 1 1 50.194 50.066 3 1.7175E-12 14330 20211116_3440_TMUAki_TMT10x_S_F2 114.74 105.26 547170 969520 9810.9 1070500 612440 499340 421810 598530 605150 642350 759500 509540 905040 55422 1076500 583040 546160 443500 604850 613090 625540 727890 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 547170 969520 9810.9 1070500 612440 499340 421810 598530 605150 642350 759500 509540 905040 55422 1076500 583040 546160 443500 604850 613090 625540 727890 1 1 1 1 1 1 1 1 1 1 1 171940000 0 171940000 13232 831 12303 69973 84633 84633 1001 1 MAFRPGVVDLPEENR Oxidation (M) 1744.8567 0.85665359 255 O60216 RAD21 Double-strand-break repair protein rad21 homolog yes yes 0 0 1 1 By MS/MS 5 0 1 1 44.954 45.097 3 0.027827 11512 20211116_3444_TMUAki_TMT10x_S_F5 44.567 23.316 1632900 2888000 0 3045100 1511300 1427700 1520500 2306000 2386400 2153600 2425500 1520200 2695400 109980 3071200 1447800 1574000 1568700 2295700 2391200 2109600 2338600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1632900 2888000 0 3045100 1511300 1427700 1520500 2306000 2386400 2153600 2425500 1520200 2695400 109980 3071200 1447800 1574000 1568700 2295700 2391200 2109600 2338600 1 1 0 1 1 1 1 1 1 1 1 204040000 0 204040000 13233 255 12304 69974 84634 84634 202 1 MAGDPVANVR Oxidation (M) 1044.5022 0.50222841 869 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 1 0 By matching By MS/MS 2.5 0.5 1 1 1 1 31.483 31.244 2 0.0012913 9542 20211116_3441_TMUAki_TMT10x_S_F3 98.009 59.233 275250 442810 0 407770 278640 261910 315270 262360 291020 254710 368740 256250 413060 18064 416290 267780 275830 317120 266500 299880 249070 353300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 275250 442810 0 407770 278640 261910 315270 262360 291020 254710 368740 256250 413060 18064 416290 267780 275830 317120 266500 299880 249070 353300 1 1 0 1 1 1 1 1 1 1 1 63594000 30156000 33438000 13234 869 12305 69975;69976 84635 84635 1040 1 MAKPEEVLVVENDQGEVVR Oxidation (M) 2156.0783 0.078333261 153 O14980 XPO1 Exportin-1 yes yes 0 0 1 1 By MS/MS By MS/MS 2.89 0.994 1 2 3 3 4 5 49.373 49.293 3;4 4.3897E-24 15724 20211116_3430_TMUAki_TMT10x_P_F3 174.2 161.92 35725000 61033000 178560 72400000 76107000 76077000 50877000 59947000 60662000 54049000 60246000 33261000 56993000 3261700 73112000 72323000 76913000 53228000 61588000 61270000 53030000 58130000 14 14 5 14 14 14 14 14 14 14 14 20698000 35315000 133790 42294000 63552000 63217000 39424000 34588000 35334000 31804000 35019000 19271000 32979000 2208600 42966000 60323000 62468000 41124000 36528000 36114000 31176000 33791000 7 7 3 7 7 7 7 7 7 7 7 15026000 25718000 44773 30106000 12555000 12859000 11453000 25359000 25328000 22246000 25227000 13990000 24014000 1053100 30145000 12000000 14445000 12104000 25059000 25156000 21854000 24339000 7 7 2 7 7 7 7 7 7 7 7 4800300000 2830600000 1969700000 13235 153 12306 69977;69978;69979;69980;69981;69982;69983;69984;69985 84636;84637;84638;84639;84640;84641;84642;84643;84644;84645;84646;84647;84648;84649 84640 110 14 MAKPEEVLVVENDQGEVVR Unmodified 2140.0834 0.083418639 153 O14980 XPO1 Exportin-1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 55.705 55.499 3 2.5806E-08 16594 20211116_3440_TMUAki_TMT10x_S_F2 107.78 89.863 7077700 11584000 55792 15210000 5792900 4613300 5530400 4730500 4687800 5185500 8811500 6590400 10823000 620790 15102000 5551300 5356000 5597400 4817300 4952300 5045700 8372500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7077700 11584000 55792 15210000 5792900 4613300 5530400 4730500 4687800 5185500 8811500 6590400 10823000 620790 15102000 5551300 5356000 5597400 4817300 4952300 5045700 8372500 2 2 2 2 2 2 2 2 2 2 2 427540000 0 427540000 13236 153 12306 69986;69987 84650;84651;84652 84652 3 MALDIEIATYRK Oxidation (M) 1438.749 0.74900062 561;995 P08670;P41219;P41219-2 VIM;PRPH Vimentin;Peripherin no no 0 0 1 1 By MS/MS 6 0 1 1 52.93 53.028 3 0.0024154 14746 20211116_3434_TMUAki_TMT10x_P_F6 65.295 23.894 5181300 8387700 0 8262700 8844900 11552000 6354600 7654200 8493500 7256900 6596600 4824300 7826100 480160 8487300 8418200 11478000 6642200 7967100 8479700 7103800 6422200 1 1 0 1 1 1 1 1 1 1 1 5181300 8387700 0 8262700 8844900 11552000 6354600 7654200 8493500 7256900 6596600 4824300 7826100 480160 8487300 8418200 11478000 6642200 7967100 8479700 7103800 6422200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1013200000 1013200000 0 13237 561;995 12307 69988 84653 84653 526 1 MALELLTQEFGIPIER Oxidation (M) 1874.9812 0.9811854 1104 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 1 0 By MS/MS By MS/MS 5.45 1.16 1 1 3 4 2 8 3 80.821 80.822 2;3 2.1783E-11 26452 20211116_3445_TMUAki_TMT10x_S_F6 138.39 116.56 9910000 16251000 234250 15196000 11043000 15851000 13005000 10276000 9934400 11877000 12462000 9228800 15160000 1037100 15586000 10651000 15982000 12993000 10777000 10331000 11533000 11943000 7 7 6 7 7 7 7 7 7 7 7 6010600 9331200 84974 8923200 5702700 10718000 7204200 5517500 5730600 6779500 7116100 5597000 8705500 554470 9158800 5509700 10691000 7183400 5910000 5943600 6569200 6821800 4 4 3 4 4 4 4 4 4 4 4 3899400 6920200 149270 6272400 5340400 5133100 5800300 4758100 4203800 5097100 5345400 3631800 6454800 482590 6427600 5141200 5291100 5810000 4866800 4387000 4964200 5121200 3 3 3 3 3 3 3 3 3 3 3 4846800000 2615600000 2231100000 13238 1104 12308 69989;69990;69991;69992;69993;69994;69995;69996;69997;69998;69999 84654;84655;84656;84657;84658;84659;84660;84661;84662;84663 84662 1465 10 MALELLTQEFGIPIER Unmodified 1858.9863 0.98627078 1104 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.957 1 2 2 1 3 3 82.123 82.133 3 1.329E-21 29130 20211116_3446_TMUAki_TMT10x_S_F7 173.03 152.29 4086400 6351900 37150 6371600 4499400 6233200 5087200 3622900 3531100 4080000 5074700 3805000 5927000 368630 6496600 4330600 6299800 5081300 3828900 3715100 3965900 4847600 6 6 4 6 6 6 6 6 6 6 6 2437500 3695700 20882 3550400 2533900 4350200 3052400 2266100 2096000 2365700 2986500 2269600 3448000 212340 3644200 2443300 4335500 3039500 2412200 2205800 2306400 2853400 3 3 1 3 3 3 3 3 3 3 3 1648900 2656100 16268 2821200 1965500 1883000 2034800 1356700 1435000 1714200 2088200 1535400 2479100 156300 2852400 1887300 1964300 2041800 1416700 1509300 1659500 1994200 3 3 3 3 3 3 3 3 3 3 3 840540000 310380000 530160000 13239 1104 12308 70000;70001;70002;70003;70004;70005 84664;84665;84666;84667;84668;84669 84669 6 MALIGLGVSHPVLK Oxidation (M) 1449.8378 0.83775605 774 P22695 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 3 0 3 1 2 55.471 55.275 3 1.3956E-06 19295 20211116_3441_TMUAki_TMT10x_S_F3 92.295 74.476 7429200 11380000 107960 12009000 10013000 15338000 8330300 8912300 8760600 8573700 9478700 6918100 10621000 752730 12257000 9564900 15276000 8551000 9375600 8919100 8387500 9121500 2 2 2 2 2 2 2 2 2 2 2 7429200 11380000 107960 12009000 10013000 15338000 8330300 8912300 8760600 8573700 9478700 6918100 10621000 752730 12257000 9564900 15276000 8551000 9375600 8919100 8387500 9121500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 449480000 449480000 0 13240 774 12309 70006;70007;70008 84670;84671;84672;84673 84673 903 4 MALIGLGVSHPVLK Unmodified 1433.8428 0.84284142 774 P22695 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes yes 0 0 0 0 By MS/MS 5 0 1 1 63.667 63.735 3 2.496E-10 19157 20211116_3444_TMUAki_TMT10x_S_F5 122.39 96.955 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13241 774 12309 70009 84674 84674 1 MALIQMGSVEEAVQALIDLHNHDLGENHHLR 2 Oxidation (M) 3521.7144 0.71436981 818 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 2 0 By MS/MS By MS/MS 5.62 1.32 2 2 2 1 1 4 4 74.509 74.519 5;6 2.6179E-10 23643 20211116_3434_TMUAki_TMT10x_P_F6 90.123 81.616 28853000 47546000 510220 46094000 29691000 49682000 35011000 28819000 28318000 31100000 35435000 26868000 44360000 2823700 47180000 28630000 49923000 35027000 30423000 29354000 30280000 33962000 11 11 7 11 11 11 11 11 11 11 11 24444000 40361000 493620 38908000 24218000 44965000 29525000 24668000 24482000 26460000 29778000 22763000 37656000 2441300 39886000 23382000 44978000 29515000 26159000 25315000 25768000 28562000 9 9 6 9 9 9 9 9 9 9 9 4408500 7184800 16606 7186000 5473200 4716700 5485500 4151600 3835600 4639700 5656800 4104800 6704200 382350 7293900 5248400 4944600 5512400 4264200 4038900 4511300 5400500 2 2 1 2 2 2 2 2 2 2 2 7721800000 4677000000 3044800000 13242 818 12310 70010;70011;70012;70013;70014;70015;70016;70017 84675;84676;84677;84678;84679;84680;84681;84682;84683;84684 84678 976;977 10 MALIQMGSVEEAVQALIDLHNHDLGENHHLR Oxidation (M) 3505.7195 0.71945518 818 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 1 0 By MS/MS 8 0 1 1 77.673 77.622 6 1.6647E-27 24791 20211116_3447_TMUAki_TMT10x_S_F8 155.22 148.57 1788900 3173100 0 2427100 2019300 2127500 2271700 2032300 1904700 1787900 1956200 1665500 2958000 132020 2524200 1941300 2183700 2279800 2063700 1955600 1756300 1885500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1788900 3173100 0 2427100 2019300 2127500 2271700 2032300 1904700 1787900 1956200 1665500 2958000 132020 2524200 1941300 2183700 2279800 2063700 1955600 1756300 1885500 1 1 0 1 1 1 1 1 1 1 1 183310000 0 183310000 13243 818 12310 70018 84685 84685 976;977 1 MALNHPYFNDLDNQIK Oxidation (M) 1947.9149 0.91489675 517 P06493;P06493-2 CDK1 Cyclin-dependent kinase 1 yes no 0 0 1 0 By MS/MS By MS/MS 5.85 1.17 2 3 4 3 1 6 7 52.47 52.703 3;4 2.4021E-21 14893 20211116_3445_TMUAki_TMT10x_S_F6 167.37 150.69 53066000 95448000 679160 98723000 77082000 93380000 61833000 91649000 93523000 79194000 79734000 49414000 89075000 5210200 100400000 73557000 95420000 64499000 92897000 93268000 77858000 77343000 19 19 11 19 19 19 19 19 19 19 19 23508000 40388000 379870 44541000 44862000 62203000 34134000 38735000 39150000 33681000 33482000 21890000 37702000 2564100 45410000 42767000 61751000 35340000 40416000 39408000 33103000 32474000 8 8 6 8 8 8 8 8 8 8 8 29559000 55060000 299290 54182000 32219000 31178000 27699000 52914000 54373000 45513000 46252000 27523000 51373000 2646100 54992000 30790000 33669000 29158000 52481000 53860000 44756000 44869000 11 11 5 11 11 11 11 11 11 11 11 13553000000 7001600000 6551300000 13244 517 12311 70019;70020;70021;70022;70023;70024;70025;70026;70027;70028;70029;70030;70031 84686;84687;84688;84689;84690;84691;84692;84693;84694;84695;84696;84697;84698;84699;84700;84701;84702;84703;84704;84705 84697 417 20 MALNHPYFNDLDNQIK Unmodified 1931.92 0.91998213 517 P06493;P06493-2 CDK1 Cyclin-dependent kinase 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 58.474 58.8 3 1.2136E-13 18871 20211116_3435_TMUAki_TMT10x_P_F7 141 111.79 61729000 98896000 1347600 110490000 71558000 85725000 69526000 49169000 40201000 48311000 68260000 57485000 92324000 6391400 111530000 68636000 88037000 69721000 51811000 43177000 47219000 64979000 9 9 7 9 9 9 9 9 9 9 9 37957000 60589000 598730 66642000 48294000 65866000 47907000 27846000 21760000 27295000 39433000 35347000 56559000 3849700 67546000 46333000 66293000 47805000 30215000 23908000 26681000 37492000 4 4 4 4 4 4 4 4 4 4 4 23772000 38307000 748870 43849000 23265000 19859000 21619000 21323000 18442000 21016000 28827000 22139000 35765000 2541700 43983000 22304000 21743000 21917000 21596000 19269000 20538000 27487000 5 5 3 5 5 5 5 5 5 5 5 9892200000 6483600000 3408600000 13245 517 12311 70032;70033;70034;70035;70036 84706;84707;84708;84709;84710;84711;84712;84713;84714;84715 84709 10 MAPALSGANLTSPR Oxidation (M) 1400.7082 0.70819844 3216 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 0 0 1 0 By MS/MS 7.33 0.471 2 1 3 39.236 39.722 2;3 3.258E-19 9881 20211116_3447_TMUAki_TMT10x_S_F8 152.67 114.54 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13246 3216 12312 70037;70038;70039 84716;84717;84718 84718 3195 3 MAPEVLPKPR Oxidation (M) 1152.6325 0.6325143 585 P09669 COX6C Cytochrome c oxidase subunit 6C yes yes 0 0 1 1 By MS/MS By MS/MS 8 0 3 1 2 35.693 36.161 3 0.061877 8410 20211116_3436_TMUAki_TMT10x_P_F8 50.452 34.912 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13247 585 12313 70040;70041;70042 84719;84720;84721 84719 554 3 MAPEVLPKPR Unmodified 1136.6376 0.63759967 585 P09669 COX6C Cytochrome c oxidase subunit 6C yes yes 0 0 0 1 By MS/MS 8 0 1 1 41 41.139 3 0.00032255 9924 20211116_3447_TMUAki_TMT10x_S_F8 102.52 88.006 1679600 2674600 0 2738700 1604100 1304000 1590600 1655400 1897800 1490100 2234300 1563800 2495900 130330 2767900 1537300 1424800 1623600 1660400 1929200 1462100 2144900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1679600 2674600 0 2738700 1604100 1304000 1590600 1655400 1897800 1490100 2234300 1563800 2495900 130330 2767900 1537300 1424800 1623600 1660400 1929200 1462100 2144900 1 1 0 1 1 1 1 1 1 1 1 100020000 0 100020000 13248 585 12313 70043 84722 84722 1 MAPTPIPTR Oxidation (M) 998.5219 0.52190122 1858 Q16643;Q16643-3;Q16643-2 DBN1 Drebrin yes no 0 0 1 0 By MS/MS By MS/MS 6.43 1.18 2 2 1 2 4 3 32.36 32.56 2 0.0033074 7223 20211116_3436_TMUAki_TMT10x_P_F8 87.181 59.927 1662300 2722900 63534 2903400 2898400 3245200 2077700 1704100 1866600 1664600 2263300 1548200 2541400 207580 2954300 2762200 3250300 2143900 1809200 1922300 1627300 2171100 10 10 6 10 10 10 10 10 10 10 10 1385200 2264500 59831 2436800 2629000 3000700 1792800 1471600 1611900 1417600 1917700 1290200 2113600 186900 2482200 2503300 2987800 1856600 1571800 1658600 1386700 1840500 4 4 3 4 4 4 4 4 4 4 4 277150 458450 3703.7 466560 269430 244520 284930 232490 254730 247020 345650 258070 427810 20688 472080 258830 262520 287270 237420 263690 240650 330620 6 6 3 6 6 6 6 6 6 6 6 147340000 124540000 22804000 13249 1858 12314 70044;70045;70046;70047;70048;70049;70050 84723;84724;84725;84726;84727;84728;84729 84725 2474 7 MAPTPIPTR Unmodified 982.52699 0.52698659 1858 Q16643;Q16643-3;Q16643-2 DBN1 Drebrin yes no 0 0 0 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 37.38 37.667 2 0.00057784 8421 20211116_3447_TMUAki_TMT10x_S_F8 118.07 97.548 4928200 7787600 12644 8596300 15819000 11997000 7490200 4296500 5403800 4186700 6182600 4587900 7269700 462920 8763400 14952000 11839000 7968500 4753700 5616300 4093500 5940000 7 7 1 7 7 7 7 7 7 7 7 4528700 7112500 12644 7903100 15432000 11702000 7070200 4016500 5125300 3904100 5700000 4215800 6639700 430630 8063400 14580000 11515000 7548600 4468200 5319600 3817500 5480800 6 6 1 6 6 6 6 6 6 6 6 399550 675110 0 693270 387690 294280 419970 279940 278440 282690 482610 372010 630020 32290 700000 372500 324080 419920 285430 296700 275970 459240 1 1 0 1 1 1 1 1 1 1 1 387830000 287110000 100730000 13250 1858 12314 70051;70052;70053;70054 84730;84731;84732;84733;84734;84735;84736 84736 7 MAPVPLDDSNRPASLTK Unmodified 1810.9247 0.92473315 3018 Q9NYF8;Q9NYF8-2;Q9NYF8-4;Q9NYF8-3 BCLAF1 Bcl-2-associated transcription factor 1 yes no 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 48.886 49.287 3 6.2316E-08 15096 20211116_3435_TMUAki_TMT10x_P_F7 115.73 106.44 14559000 24272000 157400 32170000 32929000 27459000 19125000 16767000 14464000 15462000 21114000 13557000 22677000 1573900 32190000 31234000 28024000 19977000 17548000 15154000 15155000 20162000 6 6 4 6 6 6 6 6 6 6 6 9648000 15587000 107320 20528000 28999000 24378000 15869000 10935000 9464200 10073000 13819000 8983800 14563000 1133800 20651000 27480000 24295000 16584000 11771000 10063000 9873500 13196000 4 4 2 4 4 4 4 4 4 4 4 4911500 8684300 50087 11641000 3929800 3080800 3256100 5831700 4999700 5389000 7295100 4573400 8114500 440130 11539000 3754200 3728300 3392000 5777100 5091400 5281400 6966200 2 2 2 2 2 2 2 2 2 2 2 1186600000 898040000 288540000 13251 3018 12315 70055;70056;70057;70058 84737;84738;84739;84740;84741;84742;84743 84740 7 MAPVPLDDSNRPASLTK Oxidation (M) 1826.9196 0.91964777 3018 Q9NYF8;Q9NYF8-2;Q9NYF8-4;Q9NYF8-3 BCLAF1 Bcl-2-associated transcription factor 1 yes no 0 0 1 1 By MS/MS By MS/MS 6 0.707 1 2 1 1 3 43.095 43.378 3 2.0266E-06 10728 20211116_3434_TMUAki_TMT10x_P_F6 89.502 75.711 2566900 3991000 96334 5894800 1987800 2157700 1772300 6658600 8796600 4735300 5912300 2390700 3731100 294480 5823400 1906500 2529800 2026400 6485300 8539300 4704000 5792700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2566900 3991000 96334 5894800 1987800 2157700 1772300 6658600 8796600 4735300 5912300 2390700 3731100 294480 5823400 1906500 2529800 2026400 6485300 8539300 4704000 5792700 1 1 1 1 1 1 1 1 1 1 1 516530000 0 516530000 13252 3018 12315 70059;70060;70061;70062 84744;84745 84744 3072 2 MAPYQGPDAVPGALDYK Oxidation (M) 1807.8451 0.84508585 235 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 1 0 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 57.635 57.764 3 1.1093E-05 16698 20211116_3444_TMUAki_TMT10x_S_F5 92.575 79.949 14518000 25670000 146660 23751000 18215000 25572000 15657000 24607000 24458000 22523000 21367000 13519000 23945000 1384500 24393000 17410000 25917000 16288000 25005000 24387000 22083000 20707000 6 6 5 6 6 6 6 6 6 6 6 6595600 11372000 90412 10513000 10295000 17405000 9188000 10755000 10692000 10113000 9165300 6141900 10608000 682890 10888000 9848700 17156000 9424200 11251000 10758000 9903000 8888700 3 3 3 3 3 3 3 3 3 3 3 7922400 14297000 56247 13239000 7920400 8167500 6468900 13852000 13765000 12411000 12201000 7376900 13337000 701640 13505000 7560900 8761100 6863500 13754000 13629000 12180000 11819000 3 3 2 3 3 3 3 3 3 3 3 1671700000 946030000 725720000 13253 235 12316 70063;70064;70065;70066;70067 84746;84747;84748;84749;84750;84751;84752 84750 189 7 MAQALEELR Oxidation (M) 1075.5332 0.53319418 1505 Q03252 LMNB2 Lamin-B2 yes yes 0 0 1 0 By MS/MS 3 0 1 1 36.983 36.99 2 0.021573 10624 20211116_3430_TMUAki_TMT10x_P_F3 63.076 24.924 88704 141830 11649 166140 227220 181710 126310 122530 139600 96689 130890 82679 132430 20151 168010 216040 182820 133810 126790 141130 95496 126530 1 1 1 1 1 1 1 1 1 1 1 88704 141830 11649 166140 227220 181710 126310 122530 139600 96689 130890 82679 132430 20151 168010 216040 182820 133810 126790 141130 95496 126530 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14897000 14897000 0 13254 1505 12317 70068 84753 84753 2042 1 MAQEVLTHLK Unmodified 1168.6274 0.62742892 153 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 54.137 54.441 3 0.0019823 17586 20211116_3446_TMUAki_TMT10x_S_F7 68.44 33.553 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13255 153 12318 70069;70070 84754;84755 84755 2 MAQEVLTHLK Oxidation (M) 1184.6223 0.62234354 153 O14980 XPO1 Exportin-1 yes yes 0 0 1 0 By matching By MS/MS 5.75 0.829 2 1 1 1 3 43.072 43.317 3 0.026195 11057 20211116_3445_TMUAki_TMT10x_S_F6 51.286 26.904 1611300 2817200 116240 3566300 1482900 1421500 1289000 1839800 1915900 1794600 2459700 1501100 2631600 240120 3553200 1424000 1589800 1337000 1848200 1940900 1754500 2355900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1611300 2817200 116240 3566300 1482900 1421500 1289000 1839800 1915900 1794600 2459700 1501100 2631600 240120 3553200 1424000 1589800 1337000 1848200 1940900 1754500 2355900 1 1 1 1 1 1 1 1 1 1 1 304410000 51014000 253400000 13256 153 12318 70071;70072;70073;70074 84756 84756 111 1 MAQFDAK Oxidation (M) 825.36909 0.36908897 821 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 1 0 By MS/MS By MS/MS 5 0.816 1 1 1 1 2 33.799 33.923 2 0.048266 8018 20211116_3431_TMUAki_TMT10x_P_F4 78.178 50.072 1964800 3419500 3070.9 2953400 3310000 3410400 2413500 1856200 2122500 1612500 2545600 1829200 3189000 160860 3052700 3149900 3411100 2486000 1958400 2187000 1584900 2442600 3 3 1 3 3 3 3 3 3 3 3 1558200 2729700 0 2303300 2898600 3109700 2008300 1444700 1652400 1303600 2004100 1450600 2545500 128270 2391900 2755700 3080800 2072600 1548600 1709100 1278900 1922400 1 1 0 1 1 1 1 1 1 1 1 406630 689750 3070.9 650140 411400 300660 405260 411580 470090 308960 541480 378600 643460 32595 660820 394240 330350 413400 409800 477930 305980 520140 2 2 1 2 2 2 2 2 2 2 2 133680000 112550000 21133000 13257 821 12319 70075;70076;70077 84757 84757 990 1 MAQHLQAAVAFVEQGHVR Oxidation (M) 2007.0109 0.010862818 2961 Q9NV31 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 yes yes 0 0 1 0 By MS/MS By MS/MS 8 0 2 1 1 46.517 46.538 4 4.2326E-06 12660 20211116_3436_TMUAki_TMT10x_P_F8 93.152 79.189 2989800 4881700 41315 5570500 5401200 5969900 3715400 4562400 4551800 3998000 4598600 2783900 4557700 290740 5640200 5137200 6025400 3882700 4692900 4595700 3927900 4434700 3 3 2 3 3 3 3 3 3 3 3 2197500 3430300 12984 3895300 4421700 5305800 3026100 3420800 3314600 2886000 3375400 2046000 3202600 196030 3962100 4203500 5275900 3151400 3557200 3361600 2840700 3254200 2 2 1 2 2 2 2 2 2 2 2 792260 1451400 28331 1675300 979540 664020 689260 1141600 1237200 1112000 1223200 737880 1355100 94710 1678100 933640 749560 731290 1135700 1234100 1087300 1180400 1 1 1 1 1 1 1 1 1 1 1 418930000 232020000 186920000 13258 2961 12320 70078;70079 84758;84759;84760 84758 3049 3 MASNIFGPTEEPQNIPK Unmodified 1871.9087 0.90874874 2834 Q9H910;Q9H910-3;Q9H910-2 HN1L Hematological and neurological expressed 1-like protein yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 63.196 63.194 3 0.0082613 19302 20211116_3445_TMUAki_TMT10x_S_F6 51.76 40.49 10003000 17355000 49324 18180000 14316000 16112000 11873000 9907000 8558500 10126000 12656000 9314000 16198000 877990 18457000 13664000 16402000 12068000 10392000 8997300 9880900 12082000 2 2 1 2 2 2 2 2 2 2 2 6746000 10917000 0 11405000 10302000 12877000 8497500 5750900 5552200 6203800 7787600 6280700 10189000 551360 11623000 9828700 12868000 8622600 6220400 5856600 6040300 7443200 1 1 0 1 1 1 1 1 1 1 1 3257400 6438400 49324 6774400 4013800 3234500 3375500 4156000 3006400 3922500 4868300 3033300 6009000 326620 6834400 3835600 3534100 3445900 4172100 3140700 3840600 4638600 1 1 1 1 1 1 1 1 1 1 1 977470000 666490000 310980000 13259 2834 12321 70080;70081 84761;84762 84762 2 MASNIFGTPEENQASWAK Oxidation (M) 1995.8996 0.89964061 3151 Q9UK76;Q9UK76-2;Q9UK76-3 HN1 Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed yes no 0 0 1 0 By MS/MS 5.5 0.5 1 1 2 60.656 60.759 3 4.528E-06 17884 20211116_3434_TMUAki_TMT10x_P_F6 91.475 80.687 6263700 11263000 169630 13030000 10504000 13428000 10296000 6636600 6697800 6248600 8624600 5833200 10516000 714330 13174000 10075000 13502000 10343000 7078800 7039700 6118700 8260200 3 3 2 3 3 3 3 3 3 3 3 6263700 11263000 169630 13030000 10504000 13428000 10296000 6636600 6697800 6248600 8624600 5833200 10516000 714330 13174000 10075000 13502000 10343000 7078800 7039700 6118700 8260200 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1593100000 1593100000 0 13260 3151 12322 70082;70083 84763;84764;84765 84765 3165 3 MASNIFGTPEENQASWAK Unmodified 1979.9047 0.90472599 3151 Q9UK76;Q9UK76-2;Q9UK76-3 HN1 Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 6.6 0.49 2 3 3 2 67.459 67.655 2;3 1.5227E-21 22590 20211116_3435_TMUAki_TMT10x_P_F7 145.6 130.46 27652000 47218000 789260 51299000 33195000 30308000 32895000 17678000 16977000 17563000 31165000 25753000 44075000 3105800 51732000 31869000 31887000 32890000 18608000 18471000 17158000 29625000 6 6 6 6 6 6 6 6 6 6 6 13377000 22301000 357880 24345000 17979000 21116000 20030000 9573500 8869700 9307900 15195000 12458000 20817000 1507100 24643000 17312000 21452000 19865000 10308000 9736200 9101600 14462000 3 3 3 3 3 3 3 3 3 3 3 14275000 24917000 431380 26955000 15216000 9192000 12865000 8104300 8107200 8255200 15970000 13295000 23258000 1598700 27089000 14557000 10435000 13025000 8299300 8734900 8056200 15163000 3 3 3 3 3 3 3 3 3 3 3 2721000000 1466700000 1254300000 13261 3151 12322 70084;70085;70086;70087;70088 84766;84767;84768;84769;84770;84771;84772 84769 7 MATEVAADALGEEWK Oxidation (M) 1635.745 0.74503745 1365 P62753 RPS6 40S ribosomal protein S6 yes yes 0 0 1 0 By MS/MS By MS/MS 1.86 0.833 3 2 2 4 3 65.176 64.922 2;3 3.661E-14 20118 20211116_3428_TMUAki_TMT10x_P_F1 138.89 121.38 65363000 109240000 642110 109420000 80692000 100910000 82688000 52683000 47564000 56685000 78870000 60863000 101930000 6095100 111490000 77451000 102240000 82682000 56118000 51036000 55197000 75114000 14 14 12 14 14 14 14 14 14 14 14 45600000 75407000 432410 75393000 59695000 83608000 63344000 37205000 33616000 39849000 54617000 42460000 70362000 4243900 77037000 57347000 83625000 63142000 40248000 36245000 38810000 52037000 9 9 7 9 9 9 9 9 9 9 9 19763000 33829000 209700 34032000 20997000 17304000 19343000 15478000 13948000 16836000 24253000 18403000 31567000 1851200 34454000 20104000 18619000 19540000 15870000 14791000 16387000 23077000 5 5 5 5 5 5 5 5 5 5 5 4574000000 2883500000 1690500000 13262 1365 12323 70089;70090;70091;70092;70093;70094;70095 84773;84774;84775;84776;84777;84778;84779;84780;84781;84782;84783;84784;84785;84786;84787 84776 1831 15 MATEVAADALGEEWK Unmodified 1619.7501 0.75012283 1365 P62753 RPS6 40S ribosomal protein S6 yes yes 0 0 0 0 By MS/MS By MS/MS 2.11 0.994 3 3 2 1 4 5 73.756 73.641 2;3 2.0864E-27 24003 20211116_3440_TMUAki_TMT10x_S_F2 174.05 150.06 74969000 118240000 1035100 126320000 82763000 88307000 92689000 44959000 40409000 49663000 80650000 69808000 110360000 6874100 127730000 79642000 91332000 91881000 48040000 44825000 48310000 76554000 15 15 8 15 15 15 15 15 15 15 15 45397000 69394000 444700 75773000 47471000 62580000 58807000 26360000 23273000 28425000 48135000 42270000 64775000 3873400 76653000 45807000 63753000 57958000 28691000 26113000 27676000 45664000 9 9 4 9 9 9 9 9 9 9 9 29572000 48847000 590350 50546000 35292000 25726000 33882000 18599000 17136000 21238000 32515000 27538000 45586000 3000700 51074000 33834000 27579000 33924000 19348000 18712000 20634000 30890000 6 6 4 6 6 6 6 6 6 6 6 5969700000 3475900000 2493800000 13263 1365 12323 70096;70097;70098;70099;70100;70101;70102;70103;70104 84788;84789;84790;84791;84792;84793;84794;84795;84796;84797;84798;84799;84800;84801;84802;84803;84804 84801 17 MATHTLITGLEEYVR Unmodified 1732.8818 0.8818057 1047 P46379;P46379-2;P46379-3;P46379-4;P46379-5 BAG6 Large proline-rich protein BAG6 yes no 0 0 0 0 By MS/MS 6 0 1 1 66.051 65.995 3 2.7126E-06 20441 20211116_3445_TMUAki_TMT10x_S_F6 101.88 79.345 1418300 2478000 23955 2334400 1912500 1601000 1610000 1793300 1626000 2009500 2050300 1320700 2311700 146830 2380700 1827600 1680500 1649400 1820100 1668500 1953700 1964700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1418300 2478000 23955 2334400 1912500 1601000 1610000 1793300 1626000 2009500 2050300 1320700 2311700 146830 2380700 1827600 1680500 1649400 1820100 1668500 1953700 1964700 1 1 1 1 1 1 1 1 1 1 1 430680000 0 430680000 13264 1047 12324 70105 84805 84805 1 MATQASTLYSNNITK Unmodified 1641.8032 0.80322103 1630 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 By MS/MS 8 0 1 1 51.09 51.177 3 7.1771E-08 14557 20211116_3436_TMUAki_TMT10x_P_F8 120.7 101.38 1418100 2417900 7032.8 2814800 3003900 3586100 2200000 1791400 1868500 1643900 1995500 1320400 2257600 146330 2855100 2860500 3565400 2263300 1907600 1919900 1611600 1921100 1 1 1 1 1 1 1 1 1 1 1 1418100 2417900 7032.8 2814800 3003900 3586100 2200000 1791400 1868500 1643900 1995500 1320400 2257600 146330 2855100 2860500 3565400 2263300 1907600 1919900 1611600 1921100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 178680000 178680000 0 13265 1630 12325 70106 84806 84806 1 MAVLNEQVK Oxidation (M) 1046.543 0.54303059 1091 P49321;P49321-3;P49321-4;P49321-2 NASP Nuclear autoantigenic sperm protein yes no 0 0 1 0 By MS/MS 4.5 0.5 1 1 2 38.344 38.359 2 4.6516E-05 10029 20211116_3433_TMUAki_TMT10x_P_F5 109.48 76.358 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13266 1091 12326 70107;70108 84807;84808 84808 1419 2 MAVTFIGNSTAIQELFK Oxidation (M) 1884.9655 0.96553533 539 P07437 TUBB Tubulin beta chain yes yes 0 0 1 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 79.131 79.112 3 6.2549E-11 27380 20211116_3429_TMUAki_TMT10x_P_F2 125.52 103.65 7774800 14499000 144420 12365000 8372100 14745000 11176000 9187200 11326000 10905000 11589000 7239700 13521000 729450 12801000 8103000 14750000 11194000 9672800 11525000 10580000 11172000 3 3 1 3 3 3 3 3 3 3 3 4862100 8418100 0 7024000 4699400 10199000 6042300 5746400 7260600 6888400 6775000 4526600 7849800 342720 7311500 4536000 10094000 6096500 6101400 7315900 6680500 6550600 2 2 0 2 2 2 2 2 2 2 2 2912700 6081100 144420 5341000 3672700 4546500 5133500 3440800 4065400 4016600 4814200 2713100 5671600 386720 5489100 3567000 4655800 5097700 3571400 4209200 3899100 4620900 1 1 1 1 1 1 1 1 1 1 1 2742700000 1596300000 1146400000 13267 539 12327 70109;70110;70111 84809;84810;84811 84810 467 3 MAVTFIGNSTAIQELFK Unmodified 1868.9706 0.97062071 539 P07437 TUBB Tubulin beta chain yes yes 0 0 0 0 By MS/MS By matching 3 0 2 1 1 80.386 80.336 3 1.0266E-07 28390 20211116_3430_TMUAki_TMT10x_P_F3 107.82 94.625 4300100 6105600 0 6224000 3533700 6698900 4563900 2326200 2802700 3418500 4371100 4003300 5697600 274260 6348300 3409500 6696800 4521000 2618500 2984000 3293700 4168100 1 1 0 1 1 1 1 1 1 1 1 4300100 6105600 0 6224000 3533700 6698900 4563900 2326200 2802700 3418500 4371100 4003300 5697600 274260 6348300 3409500 6696800 4521000 2618500 2984000 3293700 4168100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2234200000 814520000 1419700000 13268 539 12327 70112;70113 84812 84812 1 MAVTFIGNSTAIQELFKR Oxidation (M) 2041.0666 0.066646362 539 P07437 TUBB Tubulin beta chain yes yes 0 0 1 1 By MS/MS By MS/MS 3.91 1.08 1 3 4 2 1 6 5 75.904 75.848 3;4 7.6656E-58 24905 20211116_3431_TMUAki_TMT10x_P_F4 239.58 226.41 74420000 138230000 1051600 115440000 83605000 157360000 99969000 93226000 107960000 101820000 106580000 69298000 128900000 6930200 120000000 80617000 156280000 100790000 98279000 109430000 99090000 102860000 20 20 12 20 20 20 20 20 20 20 20 51855000 96422000 818220 79286000 58040000 128830000 67568000 67156000 79932000 73540000 76355000 48287000 89908000 4990800 82836000 55930000 126800000 68422000 71583000 80650000 71560000 73768000 13 13 8 13 13 13 13 13 13 13 13 22565000 41806000 233360 36149000 25565000 28526000 32401000 26070000 28026000 28281000 30225000 21010000 38988000 1939300 37163000 24687000 29476000 32373000 26696000 28781000 27530000 29089000 7 7 4 7 7 7 7 7 7 7 7 12683000000 7283900000 5399200000 13269 539 12328 70114;70115;70116;70117;70118;70119;70120;70121;70122;70123;70124 84813;84814;84815;84816;84817;84818;84819;84820;84821;84822;84823;84824;84825;84826;84827;84828;84829;84830;84831 84821 467 19 MAVTFIGNSTAIQELFKR Unmodified 2025.0717 0.07173174 539 P07437 TUBB Tubulin beta chain yes yes 0 0 0 1 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 78.285 78.264 3 2.6539E-63 25407 20211116_3445_TMUAki_TMT10x_S_F6 264.52 240.67 20621000 31456000 20799 29012000 16324000 20035000 25380000 10747000 9278200 13745000 18479000 19200000 29342000 1613100 29635000 15878000 20756000 24772000 11485000 10470000 13301000 17541000 2 2 1 2 2 2 2 2 2 2 2 6461200 9311000 0 8381700 5526500 8822600 7164000 4109300 3588500 4515100 5990200 6015600 8684700 466860 8623000 5336600 8854800 7070400 4428100 3892400 4393000 5704200 1 1 0 1 1 1 1 1 1 1 1 14160000 22145000 20799 20630000 10798000 11213000 18216000 6637600 5689700 9229900 12489000 13185000 20658000 1146300 21012000 10541000 11901000 17701000 7057200 6577700 8907600 11837000 1 1 1 1 1 1 1 1 1 1 1 3561700000 992280000 2569400000 13270 539 12328 70125;70126;70127 84832;84833;84834 84834 3 MCLFAGFQR Unmodified 1128.5209 0.52085536 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 65.663 65.71 2 0.00014682 21033 20211116_3433_TMUAki_TMT10x_P_F5 101.21 85.55 6218600 11298000 45088 11316000 7560800 4412100 5775000 5442300 4008300 5334700 8281000 5790500 10543000 576390 11439000 7207500 4943700 5896500 5478200 4306700 5214500 7856100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6218600 11298000 45088 11316000 7560800 4412100 5775000 5442300 4008300 5334700 8281000 5790500 10543000 576390 11439000 7207500 4943700 5896500 5478200 4306700 5214500 7856100 1 1 1 1 1 1 1 1 1 1 1 315360000 0 315360000 13271 1474 12329 70128;70129 84835;84836 84835 2 MDAAEVEFLAEK Acetyl (Protein N-term);Oxidation (M) 1409.6384 0.63844712 3223 Q9Y248 GINS2 DNA replication complex GINS protein PSF2 yes yes 1 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 76.201 76.138 2 3.3261E-05 24679 20211116_3428_TMUAki_TMT10x_P_F1 57.348 45.123 2615000 4969300 97655 5240300 3861200 3569900 3481600 3275700 3004200 3895200 3448700 2435500 4637900 325260 5301900 3698700 3733200 3536600 3363900 3092900 3778700 3313100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2615000 4969300 97655 5240300 3861200 3569900 3481600 3275700 3004200 3895200 3448700 2435500 4637900 325260 5301900 3698700 3733200 3536600 3363900 3092900 3778700 3313100 1 1 1 1 1 1 1 1 1 1 1 355510000 0 355510000 13272 3223 12330 70130;70131 84837;84838 84837 3215 2 MDAEHPELR Oxidation (M) 1112.4921 0.49205765 1561 Q12765;Q12765-2;Q12765-3 SCRN1 Secernin-1 yes no 0 0 1 0 By MS/MS 2 0 1 1 26.891 26.653 3 0.0024757 6201 20211116_3429_TMUAki_TMT10x_P_F2 75.652 64.501 105430 161680 0 151580 137150 185720 98008 99520 107490 107550 126930 98163 150830 8319 155860 130470 185160 101750 105780 109630 104710 121840 1 1 0 1 1 1 1 1 1 1 1 105430 161680 0 151580 137150 185720 98008 99520 107490 107550 126930 98163 150830 8319 155860 130470 185160 101750 105780 109630 104710 121840 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6400700 6400700 0 13273 1561 12331 70132 84839 84839 2106 1 MDAILTEAIK Unmodified 1103.5896 0.58964643 1930 Q5SSJ5;Q5SSJ5-2;Q5SSJ5-3 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 72.862 72.872 2 2.6419E-07 22885 20211116_3434_TMUAki_TMT10x_P_F6 117.7 90.444 4125300 6661800 89196 7216400 4877300 4019300 3914800 3583100 2877400 3863700 5295300 3841800 6218200 435680 7274900 4657800 4282000 3989100 3673500 3058400 3761900 5033300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4125300 6661800 89196 7216400 4877300 4019300 3914800 3583100 2877400 3863700 5295300 3841800 6218200 435680 7274900 4657800 4282000 3989100 3673500 3058400 3761900 5033300 1 1 1 1 1 1 1 1 1 1 1 243890000 0 243890000 13274 1930 12332 70133;70134 84840;84841 84840 2 MDANSATSEEMNEIIHAR 2 Oxidation (M) 2049.8732 0.87316787 3075 Q9UBD5;Q9UBD5-2;Q9UBD5-3 ORC3 Origin recognition complex subunit 3 yes no 0 0 2 0 By MS/MS 1 0 1 1 34.8 34.789 3 6.9838E-05 9849 20211116_3439_TMUAki_TMT10x_S_F1 77.137 67.902 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13275 3075 12333 70135 84842 84842 3122;3123 1 MDATANDVPSPYEVR Oxidation (M) 1679.7461 0.74610008 868 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 1 0 By MS/MS By MS/MS 2.47 1.15 4 4 3 4 8 7 42.345 42.305 2;3 3.9372E-33 14022 20211116_3441_TMUAki_TMT10x_S_F3 226.24 200.94 9016100 14254000 38443 18801000 15088000 14493000 9332100 14981000 17833000 11507000 14354000 8394600 13318000 799430 18794000 14320000 15041000 10030000 15103000 17646000 11381000 13954000 20 20 8 20 20 20 20 20 20 20 20 4473800 6884500 31816 9304300 11691000 11182000 6250300 6606400 7942400 5209800 6703900 4165600 6433000 470340 9349100 11073000 11173000 6676800 6906000 7962000 5145700 6505300 12 12 5 12 12 12 12 12 12 12 12 4542300 7369600 6626.1 9496300 3397400 3311000 3081800 8375000 9890500 6296800 7650000 4229100 6884500 329090 9445100 3247600 3868400 3353300 8197300 9684400 6235400 7449000 8 8 3 8 8 8 8 8 8 8 8 2549200000 1710200000 839030000 13276 868 12334 70136;70137;70138;70139;70140;70141;70142;70143;70144;70145;70146;70147;70148;70149;70150 84843;84844;84845;84846;84847;84848;84849;84850;84851;84852;84853;84854;84855;84856;84857;84858;84859;84860;84861;84862;84863 84860 1037 21 MDATANDVPSPYEVR Unmodified 1663.7512 0.75118546 868 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 By MS/MS By MS/MS 3.3 0.64 1 5 4 5 5 50.206 50.121 2;3 5.2163E-85 16034 20211116_3430_TMUAki_TMT10x_P_F3 341.16 282.91 21545000 36175000 686650 46813000 38521000 51807000 32500000 51402000 57939000 51525000 39904000 20064000 33795000 2491500 47080000 36815000 52461000 34068000 52286000 57190000 50316000 39052000 8 8 4 8 8 8 8 8 8 8 8 13481000 21153000 287770 27622000 31683000 42844000 25725000 30696000 31689000 28926000 23061000 12553000 19762000 1480500 27949000 30236000 42434000 26590000 31769000 31671000 28323000 22514000 5 5 2 5 5 5 5 5 5 5 5 8064300 15022000 398880 19191000 6838800 8963700 6775000 20706000 26250000 22599000 16843000 7511600 14033000 1011000 19131000 6579200 10026000 7478400 20517000 25519000 21993000 16539000 3 3 2 3 3 3 3 3 3 3 3 2677400000 1851500000 825950000 13277 868 12334 70151;70152;70153;70154;70155;70156;70157;70158;70159;70160 84864;84865;84866;84867;84868;84869;84870;84871;84872;84873 84866 10 MDDKELIEYFK Acetyl (Protein N-term);Oxidation (M) 1487.6854 0.68539731 1696 Q14232;Q14232-2 EIF2B1 Translation initiation factor eIF-2B subunit alpha yes no 1 0 1 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 74.628 74.522 2 0.0019041 24004 20211116_3428_TMUAki_TMT10x_P_F1 78.556 63.355 12498000 22882000 155210 16089000 16456000 25537000 16964000 20766000 21928000 20996000 20119000 11638000 21326000 1210000 17034000 15799000 25325000 17334000 21361000 22027000 20496000 19464000 5 5 2 5 5 5 5 5 5 5 5 5938400 10578000 147870 7531100 6955300 14670000 8335300 8646100 9316600 8765000 8701400 5530300 9859000 633180 8004900 6712000 14369000 8413100 9098300 9413300 8555400 8413000 2 2 1 2 2 2 2 2 2 2 2 6559300 12304000 7343.3 8557400 9500300 10867000 8628500 12120000 12612000 12231000 11418000 6107300 11467000 576810 9029100 9086900 10957000 8921100 12263000 12614000 11941000 11051000 3 3 1 3 3 3 3 3 3 3 3 1936000000 1324000000 612060000 13278 1696 12335 70161;70162;70163;70164 84874;84875;84876;84877;84878 84874 2287 5 MDDREDLVYQAK Acetyl (Protein N-term);Oxidation (M) 1539.6875 0.68752257 1342 P62258 YWHAE 14-3-3 protein epsilon yes yes 1 0 1 1 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 3 5 43.247 43.206 2;3 1.0681E-06 11408 20211116_3440_TMUAki_TMT10x_S_F2 100.57 91.706 21426000 32677000 29228 36986000 35349000 31624000 24352000 22375000 25330000 17012000 28545000 19949000 30507000 1821300 37347000 33608000 32339000 25307000 23055000 25840000 16835000 27437000 8 8 2 8 8 8 8 8 8 8 8 6083300 8500700 22561 12473000 21450000 20334000 5513600 7938900 11294000 5891000 9359800 5663900 7946900 676360 12562000 20163000 19951000 6604900 8636000 11168000 5837800 9088900 3 3 1 3 3 3 3 3 3 3 3 15343000 24176000 6667.8 24512000 13900000 11290000 18839000 14436000 14036000 11121000 19185000 14285000 22560000 1145000 24785000 13445000 12388000 18702000 14419000 14672000 10998000 18348000 5 5 1 5 5 5 5 5 5 5 5 7443200000 5408600000 2034600000 13279 1342 12336 70165;70166;70167;70168;70169;70170;70171;70172 84879;84880;84881;84882;84883;84884;84885 84883 1802 7 MDDREDLVYQAK Acetyl (Protein N-term) 1523.6926 0.69260795 1342 P62258 YWHAE 14-3-3 protein epsilon yes yes 1 0 0 1 By MS/MS By MS/MS 2 0.853 4 3 4 6 5 50.974 50.78 2;3 2.5691E-16 14339 20211116_3428_TMUAki_TMT10x_P_F1 88.496 73.235 39681000 59452000 208910 91537000 69564000 52794000 47109000 24241000 21605000 24638000 49330000 36945000 55595000 3411600 90538000 66118000 55531000 48169000 26100000 24079000 24047000 46728000 11 11 4 11 11 11 11 11 11 11 11 22574000 32842000 155440 51710000 60093000 45989000 38181000 13573000 12090000 14068000 28112000 21018000 30715000 2283600 51335000 57062000 46475000 39067000 15451000 14009000 13719000 26623000 6 6 3 6 6 6 6 6 6 6 6 17107000 26610000 53471 39827000 9471000 6805200 8927800 10668000 9515100 10571000 21217000 15927000 24879000 1128000 39203000 9055600 9056300 9102400 10649000 10069000 10328000 20105000 5 5 1 5 5 5 5 5 5 5 5 9453500000 6682200000 2771300000 13280 1342 12336 70173;70174;70175;70176;70177;70178;70179;70180;70181;70182;70183 84886;84887;84888;84889;84890;84891;84892;84893;84894;84895;84896 84886 11 MDDTLFQLK Acetyl (Protein N-term);Oxidation (M) 1167.5482 0.54817555 2875 Q9HD42 CHMP1A Charged multivesicular body protein 1a yes yes 1 0 1 0 By MS/MS By MS/MS 2.5 0.957 1 2 2 1 3 3 75.248 75.13 2 0.00010086 24522 20211116_3440_TMUAki_TMT10x_S_F2 97.798 82.716 16467000 28113000 123580 25767000 17710000 25655000 18304000 21374000 19608000 20466000 21072000 15333000 26224000 1478200 26451000 17003000 26046000 18576000 21921000 19943000 20025000 20282000 7 7 6 7 7 7 7 7 7 7 7 7960700 12996000 39835 11842000 7687900 16066000 9107000 9736400 9923200 9726600 9944700 7412500 12122000 693300 12226000 7409600 15964000 9188700 10218000 10060000 9499900 9592600 3 3 3 3 3 3 3 3 3 3 3 8505800 15117000 83744 13925000 10023000 9589000 9196600 11638000 9684900 10739000 11127000 7920200 14102000 784940 14225000 9593100 10082000 9386800 11702000 9882500 10526000 10689000 4 4 3 4 4 4 4 4 4 4 4 1586000000 656970000 929040000 13281 2875 12337 70184;70185;70186;70187;70188;70189 84897;84898;84899;84900;84901;84902;84903;84904 84902 2997 8 MDDTLFQLK Acetyl (Protein N-term) 1151.5533 0.55326092 2875 Q9HD42 CHMP1A Charged multivesicular body protein 1a yes yes 1 0 0 0 By MS/MS 4 0 1 1 80.116 80.092 2 0.055989 27116 20211116_3442_TMUAki_TMT10x_S_F4 53.17 38.088 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13282 2875 12337 70190 84905 84905 1 MDELFPLIFPAEPAQASGPYVEIIEQPK Acetyl (Protein N-term);Oxidation (M) 3186.5835 0.583505 1509 Q04206;Q04206-3;Q04206-4 RELA Transcription factor p65 yes no 1 0 1 0 By MS/MS 1.33 0.471 2 1 3 84.422 84.422 3;4 8.1081E-10 28080 20211116_3428_TMUAki_TMT10x_P_F1 67.31 61.242 1080900 1855400 18707 1736400 1022400 2062400 1367700 1182600 1175100 1223800 1478700 1006500 1730800 102320 1784700 989860 2061100 1363300 1248000 1214700 1193500 1417100 3 3 2 3 3 3 3 3 3 3 3 1080900 1855400 18707 1736400 1022400 2062400 1367700 1182600 1175100 1223800 1478700 1006500 1730800 102320 1784700 989860 2061100 1363300 1248000 1214700 1193500 1417100 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 152470000 152470000 0 13283 1509 12338 70191;70192;70193 84906;84907 84906 2046 2 MDELQLFR Oxidation (M) 1066.5117 0.51173046 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 1 0 By MS/MS By MS/MS 3.22 1.31 1 2 2 2 2 5 4 55.582 55.49 2 0.0026033 17018 20211116_3442_TMUAki_TMT10x_S_F4 117.4 50.405 49006000 83814000 231710 84110000 64072000 72602000 51042000 74931000 76318000 68834000 72673000 45630000 78209000 4369900 85613000 61114000 74724000 53238000 75884000 76405000 67478000 70218000 8 8 5 8 8 8 8 8 8 8 8 18065000 29095000 155490 29297000 27040000 42871000 22670000 27361000 26743000 24812000 26505000 16821000 27150000 1726000 30077000 25824000 42488000 23350000 28526000 27019000 24338000 25576000 4 4 3 4 4 4 4 4 4 4 4 30942000 54719000 76219 54813000 37032000 29731000 28372000 47569000 49575000 44022000 46168000 28810000 51059000 2643900 55537000 35290000 32236000 29888000 47359000 49385000 43140000 44642000 4 4 2 4 4 4 4 4 4 4 4 6393500000 3257200000 3136200000 13284 1235 12339 70194;70195;70196;70197;70198;70199;70200;70201;70202 84908;84909;84910;84911;84912;84913;84914;84915;84916 84915 1673 9 MDELQLFR Unmodified 1050.5168 0.51681584 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 By MS/MS By MS/MS 4.29 1.03 2 2 2 1 4 3 67.073 67.088 2 0.00041512 20499 20211116_3444_TMUAki_TMT10x_S_F5 142.79 115.26 33419000 52828000 0 59017000 42814000 44398000 39956000 21765000 17336000 23578000 36609000 31115000 49317000 2726700 59552000 40969000 45622000 39978000 23326000 19310000 22953000 34718000 4 4 0 4 4 4 4 4 4 4 4 20900000 32360000 0 36634000 28895000 34173000 27394000 13441000 10664000 14492000 22514000 19460000 30212000 1807400 37034000 27665000 34499000 27348000 14744000 12001000 14110000 21352000 2 2 0 2 2 2 2 2 2 2 2 12519000 20467000 0 22383000 13920000 10225000 12562000 8323800 6672500 9086700 14094000 11655000 19105000 919300 22517000 13304000 11124000 12630000 8581900 7309200 8843100 13366000 2 2 0 2 2 2 2 2 2 2 2 4746100000 2407000000 2339100000 13285 1235 12339 70203;70204;70205;70206;70207;70208;70209 84917;84918;84919;84920;84921;84922;84923 84923 7 MDENQFVAVTSTNAAK Oxidation (M) 1740.7989 0.79886394 1852;1691;1692 Q14195-2;Q14195;Q16555;Q16555-2;Q14194-2;Q14194 DPYSL3;DPYSL2;CRMP1 Dihydropyrimidinase-related protein 3;Dihydropyrimidinase-related protein 2;Dihydropyrimidinase-related protein 1 no no 0 0 1 0 By MS/MS By MS/MS 4.14 0.639 1 4 2 4 3 47.672 47.806 2;3 1.5136E-10 13955 20211116_3442_TMUAki_TMT10x_S_F4 122.75 112.46 23575000 37255000 334890 46237000 42217000 45408000 29002000 35882000 40948000 27825000 37292000 21953000 34796000 2440100 46522000 40162000 46095000 30478000 36722000 41005000 27508000 36088000 9 9 6 9 9 9 9 9 9 9 9 13845000 20710000 187310 26048000 34122000 37319000 21719000 20751000 23052000 16350000 20797000 12892000 19345000 1518700 26364000 32411000 36951000 22720000 21802000 23314000 16150000 20132000 6 6 3 6 6 6 6 6 6 6 6 9730500 16545000 147580 20189000 8095100 8088400 7282800 15131000 17895000 11475000 16495000 9061200 15452000 921360 20158000 7750500 9144600 7758200 14919000 17691000 11358000 15956000 3 3 3 3 3 3 3 3 3 3 3 7829900000 4807800000 3022100000 13286 1692;1852;1691 12340 70210;70211;70212;70213;70214;70215;70216 84924;84925;84926;84927;84928;84929;84930;84931;84932 84931 2264 9 MDENQFVAVTSTNAAK Unmodified 1724.8039 0.80394931 1852;1691;1692 Q14195-2;Q14195;Q16555;Q16555-2;Q14194-2;Q14194 DPYSL3;DPYSL2;CRMP1 Dihydropyrimidinase-related protein 3;Dihydropyrimidinase-related protein 2;Dihydropyrimidinase-related protein 1 no no 0 0 0 0 By MS/MS By MS/MS 4.83 1.07 1 1 2 2 3 3 55.56 55.612 3 4.3989E-15 15771 20211116_3444_TMUAki_TMT10x_S_F5 144.4 132.96 26824000 43835000 199240 53335000 32797000 32912000 26635000 27534000 23544000 24258000 34921000 24977000 40938000 2451000 53434000 31302000 34667000 27244000 28168000 24491000 23826000 33334000 8 8 7 8 8 8 8 8 8 8 8 10879000 17531000 70919 20936000 19713000 22703000 15783000 12544000 11256000 10951000 14773000 10130000 16371000 1049500 21144000 18805000 22791000 16075000 13219000 11774000 10761000 14142000 4 4 3 4 4 4 4 4 4 4 4 15945000 26304000 128320 32400000 13084000 10209000 10852000 14991000 12288000 13307000 20147000 14848000 24567000 1401500 32290000 12497000 11876000 11169000 14950000 12717000 13066000 19192000 4 4 4 4 4 4 4 4 4 4 4 5322200000 2448200000 2874000000 13287 1692;1852;1691 12340 70217;70218;70219;70220;70221;70222 84933;84934;84935;84936;84937;84938;84939;84940 84939 8 MDERPIHAEPQYPVR Oxidation (M) 1852.889 0.88901635 727 P19022;P19022-2 CDH2 Cadherin-2 yes no 0 0 1 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 30.949 30.801 4 8.0207E-05 6735 20211116_3431_TMUAki_TMT10x_P_F4 89.541 73.047 225800 414180 6265.5 393690 440810 441540 291200 339850 348190 265320 384600 210290 386400 27571 403790 419290 444580 304960 348430 353020 262190 369880 2 2 2 2 2 2 2 2 2 2 2 129220 230080 5948.9 205980 327240 341070 167660 203170 189200 151150 226040 120360 214600 19031 213860 310120 336030 179080 211970 192840 149770 216910 1 1 1 1 1 1 1 1 1 1 1 96584 184090 316.67 187700 113570 100470 123530 136680 158990 114170 158560 89932 171790 8540.6 189930 109170 108550 125880 136460 160180 112430 152970 1 1 1 1 1 1 1 1 1 1 1 98915000 53474000 45441000 13288 727 12341 70223;70224;70225 84941;84942 84941 835 2 MDFEDDYTHSACR Acetyl (Protein N-term);Oxidation (M) 1703.6192 0.61918501 1915 Q5BKZ1;Q5BKZ1-2 ZNF326 DBIRD complex subunit ZNF326 yes no 1 0 1 0 By MS/MS By MS/MS 1.5 0.866 3 1 2 2 39.457 39.387 2 2.4627E-30 11774 20211116_3439_TMUAki_TMT10x_S_F1 242.83 237.29 425600 704500 13314 1038200 745570 735230 447270 759330 907710 535460 796030 396350 658620 49370 1031100 708010 768240 483530 764120 899330 532180 771360 3 3 2 3 3 3 3 3 3 3 3 174310 263310 13284 377540 542200 553260 291800 291340 388140 231400 317350 162400 246130 31985 379710 514400 546900 312060 307640 388140 228470 308330 1 1 1 1 1 1 1 1 1 1 1 251280 441190 30.185 660680 203370 181970 155460 467990 519570 304060 478680 233950 412500 17385 651340 193610 221330 171470 456480 511190 303710 463030 2 2 1 2 2 2 2 2 2 2 2 531530000 410440000 121090000 13289 1915 12342 70226;70227;70228;70229 84943;84944;84945;84946;84947 84946 2513 5 MDFEDDYTHSACR Acetyl (Protein N-term) 1687.6243 0.62427039 1915 Q5BKZ1;Q5BKZ1-2 ZNF326 DBIRD complex subunit ZNF326 yes no 1 0 0 0 By MS/MS 1 0 1 1 50.239 49.977 2 6.2803E-06 16068 20211116_3439_TMUAki_TMT10x_S_F1 85.821 83.793 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13290 1915 12342 70230 84948 84948 1 MDFLLGNPFSSPVGQR Acetyl (Protein N-term) 1805.8771 0.87705468 289 O60784;O60784-3;O60784-2 TOM1 Target of Myb protein 1 yes no 1 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 83.868 83.879 2 4.5769E-47 27960 20211116_3436_TMUAki_TMT10x_P_F8 218.55 198.56 7638600 14482000 2093.5 9666100 7010700 7735700 8948800 10799000 4594600 7398800 11229000 7112300 13495000 92068 10172000 6770400 8068500 8841000 10724000 5100100 7366200 10627000 4 4 1 4 4 4 4 4 4 4 4 200060 386250 2093.5 398770 309400 492530 281600 251760 241570 212070 272450 186290 360460 20069 407330 296100 490560 285850 266940 248610 208750 261860 1 1 1 1 1 1 1 1 1 1 1 7438600 14096000 0 9267300 6701300 7243100 8667200 10548000 4353000 7186700 10956000 6926000 13135000 71999 9765000 6474300 7577900 8555100 10457000 4851500 7157400 10365000 3 3 0 3 3 3 3 3 3 3 3 152330000 87070000 65255000 13291 289 12343 70231;70232;70233 84949;84950;84951;84952 84949 4 MDFQHRPGGK Acetyl (Protein N-term);Oxidation (M) 1229.5611 0.56114027 1806 Q15428 SF3A2 Splicing factor 3A subunit 2 yes yes 1 0 1 1 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 28.02 27.96 2;3 4.8073E-05 8311 20211116_3441_TMUAki_TMT10x_S_F3 111.65 100.89 617870 1028000 9521.8 932950 867600 881650 732340 550680 673220 559770 850440 575330 958880 58567 957710 828750 893890 748080 576870 693760 546320 814910 4 4 2 4 4 4 4 4 4 4 4 295330 439040 6816.6 425760 504870 555800 328130 262340 313690 244930 402500 275020 409620 32507 437220 479980 551600 341630 281020 322910 239930 385530 2 2 1 2 2 2 2 2 2 2 2 322550 588960 2705.2 507190 362740 325850 404210 288340 359520 314840 447940 300310 549260 26060 520480 348770 342300 406450 295850 370850 306390 429380 2 2 1 2 2 2 2 2 2 2 2 80739000 62041000 18698000 13292 1806 12344 70234;70235;70236 84953;84954;84955;84956 84956 2429 4 MDFQHRPGGK Acetyl (Protein N-term) 1213.5662 0.56622565 1806 Q15428 SF3A2 Splicing factor 3A subunit 2 yes yes 1 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 33.125 33.111 3 0.003756 7650 20211116_3431_TMUAki_TMT10x_P_F4 71.349 64.221 2969900 4865300 5131.1 4928300 6146600 5422600 3546900 2378900 3041700 2499300 3731700 2765200 4540100 290060 5030600 5828200 5425300 3718100 2575900 3141000 2436000 3578500 2 2 1 2 2 2 2 2 2 2 2 2969900 4865300 5131.1 4928300 6146600 5422600 3546900 2378900 3041700 2499300 3731700 2765200 4540100 290060 5030600 5828200 5425300 3718100 2575900 3141000 2436000 3578500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 129890000 129890000 0 13293 1806 12344 70237;70238;70239 84957;84958;84959 84957 3 MDGIVPDIAVGTK Acetyl (Protein N-term);Oxidation (M) 1372.6908 0.69081704 818 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 1 0 1 0 By MS/MS By MS/MS 2.75 1.01 2 2 5 3 8 4 63.418 63.292 2 1.0365E-11 24624 20211116_3430_TMUAki_TMT10x_P_F3 111.06 86.134 51561000 86520000 130240 80531000 58886000 90504000 60482000 66701000 73305000 68719000 69993000 48008000 80710000 3561700 82727000 56494000 91049000 61663000 69079000 73897000 67031000 67622000 13 13 5 13 13 13 13 13 13 13 13 30487000 48931000 71272 45653000 33476000 67398000 38108000 36694000 43087000 39788000 38781000 28386000 45645000 1824900 47130000 32211000 66629000 38566000 38950000 43463000 38732000 37544000 8 8 2 8 8 8 8 8 8 8 8 21074000 37589000 58968 34878000 25410000 23106000 22374000 30007000 30218000 28930000 31212000 19621000 35064000 1736800 35597000 24283000 24420000 23096000 30129000 30434000 28299000 30079000 5 5 3 5 5 5 5 5 5 5 5 12345000000 6698000000 5646600000 13294 818 12345 70240;70241;70242;70243;70244;70245;70246;70247;70248;70249;70250;70251 84960;84961;84962;84963;84964;84965;84966;84967;84968;84969;84970;84971;84972;84973;84974;84975 84963 978 16 MDGIVPDIAVGTK Acetyl (Protein N-term) 1356.6959 0.69590241 818 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 1 0 0 0 By MS/MS By MS/MS 3.22 1.31 1 2 2 2 2 5 4 79.338 79.32 2 3.2391E-09 26801 20211116_3442_TMUAki_TMT10x_S_F4 94.692 80.698 52533000 82241000 285920 84853000 54225000 53081000 58301000 23571000 22002000 30766000 52248000 48912000 76749000 4165700 85905000 52082000 55372000 57801000 25670000 25045000 29751000 49465000 9 9 3 9 9 9 9 9 9 9 9 25962000 38455000 137360 38642000 23375000 32606000 27722000 12634000 11981000 15844000 25386000 24171000 35883000 1933900 39318000 22510000 33140000 27405000 13949000 13353000 15342000 24074000 5 5 1 5 5 5 5 5 5 5 5 26572000 43785000 148560 46211000 30850000 20476000 30579000 10937000 10021000 14921000 26862000 24741000 40866000 2231800 46586000 29572000 22232000 30396000 11721000 11692000 14409000 25391000 4 4 2 4 4 4 4 4 4 4 4 9598900000 5240900000 4358000000 13295 818 12345 70252;70253;70254;70255;70256;70257;70258;70259;70260 84976;84977;84978;84979;84980;84981;84982;84983;84984 84983 9 MDGIVPDIAVGTKR Acetyl (Protein N-term);Oxidation (M) 1528.7919 0.79192806 818 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 1 0 1 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 57.025 56.891 2 1.3638E-29 17636 20211116_3442_TMUAki_TMT10x_S_F4 163.84 145.93 6469900 11176000 95535 10773000 11334000 17115000 8944000 25993000 20591000 16232000 13681000 6024700 10427000 675810 11113000 10812000 17244000 9557800 25688000 20193000 16255000 13412000 6 6 5 6 6 6 6 6 6 6 6 3345400 5443700 34853 5276800 7282300 12128000 5420200 12361000 9870800 7458500 6461200 3115000 5079000 347230 5497500 6936700 11938000 5733100 12409000 9726100 7486300 6338400 3 3 2 3 3 3 3 3 3 3 3 3124600 5732600 60682 5496100 4051400 4986400 3523800 13632000 10720000 8773500 7220100 2909700 5348200 328580 5616000 3875000 5305500 3824700 13279000 10467000 8768900 7073400 3 3 3 3 3 3 3 3 3 3 3 2349200000 1022100000 1327100000 13296 818 12346 70261;70262;70263;70264 84985;84986;84987;84988;84989;84990 84990 978 6 MDIRPNHTIYINNMNDK Acetyl (Protein N-term);2 Oxidation (M) 2161.9885 0.9884724 559 P08579 SNRPB2 U2 small nuclear ribonucleoprotein B'' no no 1 0 2 1 By matching 4 0 1 1 37.328 37.486 3 1 NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4881700 0 4881700 13297 559 12347 70265 0 MDKNELVQK Acetyl (Protein N-term);Oxidation (M) 1161.57 0.56997362 1395 P63104 YWHAZ 14-3-3 protein zeta/delta yes yes 1 0 1 1 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 36.944 37.076 2 0.0016282 12583 20211116_3441_TMUAki_TMT10x_S_F3 70.919 46.932 95917 202030 0 151830 126610 117390 125970 103950 108150 99587 131970 89293 188330 6444 157920 121260 121410 127260 106240 111650 97442 126570 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 95917 202030 0 151830 126610 117390 125970 103950 108150 99587 131970 89293 188330 6444 157920 121260 121410 127260 106240 111650 97442 126570 1 1 0 1 1 1 1 1 1 1 1 13002000 0 13002000 13298 1395 12348 70266;70267;70268 84991;84992;84993 84992 1875 3 MDLAAAAEPGAGSQHLEVRDEVAEK Acetyl (Protein N-term);Oxidation (M) 2651.2497 0.2497087 1716 Q14566 MCM6 DNA replication licensing factor MCM6 yes yes 1 0 1 1 By MS/MS By MS/MS 2.33 1.11 2 1 2 1 3 3 49.491 49.356 3 1.0044E-60 15805 20211116_3439_TMUAki_TMT10x_S_F1 186.55 172.54 10627000 18806000 43703 20428000 13096000 25594000 10152000 15825000 18224000 16212000 14646000 9894400 17554000 905630 20803000 12483000 25535000 10701000 16594000 18060000 15818000 14239000 11 11 7 11 11 11 11 11 11 11 11 6332000 10959000 14938 12089000 9331100 20728000 7488500 8718400 10202000 9220100 8000400 5895700 10230000 555460 12382000 8900100 20313000 7776300 9485400 10182000 8984200 7785800 6 6 4 6 6 6 6 6 6 6 6 4294600 7846600 28765 8339100 3765000 4866300 2663500 7106700 8022600 6991900 6645800 3998800 7323500 350170 8420500 3582500 5222000 2925200 7109100 7878300 6833400 6453600 5 5 3 5 5 5 5 5 5 5 5 2030500000 1464100000 566430000 13299 1716 12349 70269;70270;70271;70272;70273;70274 84994;84995;84996;84997;84998;84999;85000;85001;85002;85003;85004 85000 2307 11 MDLFGDLPEPERSPRPAAGK Acetyl (Protein N-term);Oxidation (M) 2240.0896 0.089566649 2771 Q9H0C8 ILKAP Integrin-linked kinase-associated serine/threonine phosphatase 2C yes yes 1 0 1 2 By MS/MS 4 0 1 1 55.949 55.932 3 9.037E-05 17263 20211116_3442_TMUAki_TMT10x_S_F4 61.648 49.672 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13300 2771 12350 70275 85005 85005 2941 1 MDLNSASTVVLQVLTQATSQDTAVLKPAEEQLK Acetyl (Protein N-term);Oxidation (M) 3585.8448 0.84475808 3130 Q9UI26 IPO11 Importin-11 yes yes 1 0 1 1 By MS/MS 6.5 0.5 1 1 2 82.926 82.945 4 6.2713E-37 29462 20211116_3446_TMUAki_TMT10x_S_F7 137.88 129.38 336820 591560 4285.3 523040 442820 404160 445280 285340 326170 375090 405690 313640 551740 33403 536650 424910 416390 447850 298790 339860 362630 388890 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 336820 591560 4285.3 523040 442820 404160 445280 285340 326170 375090 405690 313640 551740 33403 536650 424910 416390 447850 298790 339860 362630 388890 1 1 1 1 1 1 1 1 1 1 1 110390000 0 110390000 13301 3130 12351 70276;70277 85006 85006 3149 1 MDLNSEQAEQLER Oxidation (M) 1577.6991 0.69914989 1901 Q52LJ0;Q52LJ0-1 FAM98B Protein FAM98B yes no 0 0 1 0 By MS/MS By MS/MS 1.5 0.5 3 3 2 4 36.323 36.349 2;3 2.8738E-11 8841 20211116_3428_TMUAki_TMT10x_P_F1 149.41 117.48 1078500 1752300 10648 2305500 2614800 1935200 1399900 1490500 1712700 1181900 1869300 1004200 1637100 89887 2307400 2476200 1984300 1493200 1528700 1734300 1167000 1798400 5 5 1 5 5 5 5 5 5 5 5 451290 710370 0 985480 1878300 1407200 799280 716040 921750 560760 892890 420100 663880 45187 992230 1773000 1392000 870960 758250 931340 554070 862240 2 2 0 2 2 2 2 2 2 2 2 627250 1041900 10648 1320000 736590 527940 600600 774510 790960 621120 976360 584070 973220 44699 1315200 703130 592230 622210 770430 802920 612930 936120 3 3 1 3 3 3 3 3 3 3 3 168540000 111950000 56593000 13302 1901 12352 70278;70279;70280;70281;70282;70283 85007;85008;85009;85010;85011;85012 85008 2501 6 MDLNSEQAEQLER Unmodified 1561.7042 0.70423527 1901 Q52LJ0;Q52LJ0-1 FAM98B Protein FAM98B yes no 0 0 0 0 By MS/MS 2 0 1 1 45.95 45.921 3 0.00048325 12600 20211116_3440_TMUAki_TMT10x_S_F2 74.789 59.817 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13303 1901 12352 70284 85013 85013 1 MDLQAAGAQAQGAAEPSRGPPLPSAR Acetyl (Protein N-term);Oxidation (M) 2604.2714 0.27144719 2902 Q9NQ92 COPRS Coordinator of PRMT5 and differentiation stimulator yes yes 1 0 1 1 By MS/MS By MS/MS 4 0 2 1 1 46.213 46.37 3 2.76E-62 13286 20211116_3442_TMUAki_TMT10x_S_F4 210.36 189.97 1355700 2358900 18999 2727300 1948500 1807700 1116700 2571400 2645700 1807800 2207200 1262200 2202500 117570 2742500 1847200 1915500 1223500 2553000 2609000 1797000 2142800 4 4 2 4 4 4 4 4 4 4 4 379710 617480 13250 701950 1076700 1142000 622460 751610 841580 576550 669590 353640 576490 53591 716720 1021800 1127400 661920 778650 840480 570300 651250 1 1 1 1 1 1 1 1 1 1 1 975950 1741500 5748.6 2025300 871770 665760 494240 1819800 1804100 1231200 1537600 908580 1626000 63976 2025800 825390 788020 561610 1774400 1768600 1226700 1491500 3 3 1 3 3 3 3 3 3 3 3 611220000 369070000 242140000 13304 2902 12353 70285;70286 85014;85015;85016;85017 85015 3016 4 MDLSELERDNTGR Acetyl (Protein N-term);Oxidation (M) 1592.71 0.71004893 358 O75792 RNASEH2A Ribonuclease H2 subunit A yes yes 1 0 1 1 By MS/MS By MS/MS 1 0 2 1 1 42.123 42.032 2 1.0295E-11 10786 20211116_3428_TMUAki_TMT10x_P_F1 136.36 117.75 736550 1241000 19787 1390200 1193700 1446600 1016400 898950 884710 692700 937130 685940 1158500 84647 1408500 1141200 1457900 1036200 935450 907660 685030 902390 2 2 1 2 2 2 2 2 2 2 2 526110 813020 0 879920 1013700 1222400 840010 534040 542480 441300 593360 489850 758890 49187 898060 967580 1208700 851930 574940 566700 434820 570810 1 1 0 1 1 1 1 1 1 1 1 210440 427960 19787 510280 179940 224190 176410 364910 342230 251400 343770 196090 399640 35460 510480 173640 249200 184260 360510 340960 250210 331580 1 1 1 1 1 1 1 1 1 1 1 243030000 171360000 71673000 13305 358 12354 70287;70288 85018;85019 85018 278 2 MDMSLDDIIK Unmodified 1179.5515 0.55154636 2113 Q86V81 ALYREF THO complex subunit 4 yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 75.956 75.986 2 8.9238E-05 24177 20211116_3444_TMUAki_TMT10x_S_F5 98.048 67.478 3612200 5146200 0 6677800 3210500 4643600 3882600 2286800 2199300 2505900 3778100 3363100 4807700 269660 6673800 3093700 4803100 3851100 2450600 2367100 2438400 3595700 1 1 0 1 1 1 1 1 1 1 1 3612200 5146200 0 6677800 3210500 4643600 3882600 2286800 2199300 2505900 3778100 3363100 4807700 269660 6673800 3093700 4803100 3851100 2450600 2367100 2438400 3595700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 362510000 362510000 0 13306 2113 12355 70289;70290;70291 85020;85021 85021 2 MDNYADLSDTELTTLLR Acetyl (Protein N-term);Oxidation (M) 2027.9358 0.93575135 1134 P50402 EMD Emerin yes yes 1 0 1 0 By matching By MS/MS 1 0 2 1 1 80.567 80.552 2 0.011501 28465 20211116_3439_TMUAki_TMT10x_S_F1 42.426 35.219 2416900 4290600 0 3707200 2454400 2353500 3192400 1354700 1215500 1833200 2762100 2250300 4001400 193310 3802900 2371500 2458600 3138400 1442100 1378000 1770700 2616600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2416900 4290600 0 3707200 2454400 2353500 3192400 1354700 1215500 1833200 2762100 2250300 4001400 193310 3802900 2371500 2458600 3138400 1442100 1378000 1770700 2616600 1 1 0 1 1 1 1 1 1 1 1 580270000 413410000 166860000 13307 1134 12356 70292;70293 85022 85022 1498 1 MDPLSELQDDLTLDDTSEALNQLK Acetyl (Protein N-term);Oxidation (M) 2761.2852 0.28515073 1544 Q07960 ARHGAP1 Rho GTPase-activating protein 1 yes yes 1 0 1 0 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 83.498 83.493 3 5.7765E-17 27681 20211116_3428_TMUAki_TMT10x_P_F1 111.45 98.216 5952200 10112000 101960 9146900 6844300 9640200 7364900 6271300 6319500 6494500 7887200 5542800 9431900 591080 9406900 6581300 9714700 7410900 6552900 6530400 6333600 7560000 4 4 3 4 4 4 4 4 4 4 4 2388100 3936700 32456 3491600 2070800 4653600 2420800 2460800 2600700 2778400 3061400 2223700 3671700 213870 3610800 1995700 4619900 2442800 2622200 2654200 2700400 2939000 2 2 1 2 2 2 2 2 2 2 2 3564200 6175200 69508 5655300 4773500 4986600 4944100 3810400 3718800 3716100 4825800 3319100 5760200 377210 5796100 4585600 5094800 4968200 3930700 3876200 3633200 4621000 2 2 2 2 2 2 2 2 2 2 2 1361000000 926450000 434580000 13308 1544 12357 70294;70295;70296 85023;85024;85025;85026 85023 2073 4 MDPLSELQDDLTLDDTSEALNQLK Acetyl (Protein N-term) 2745.2902 0.29023611 1544 Q07960 ARHGAP1 Rho GTPase-activating protein 1 yes yes 1 0 0 0 By MS/MS 1 0 1 1 84.744 84.744 3 3.3393E-29 28204 20211116_3428_TMUAki_TMT10x_P_F1 148.44 119 1753100 2995100 60690 3287500 1756300 2562300 2206000 1169800 993480 1250000 1956200 1632700 2795900 194310 3322300 1698500 2623800 2176600 1262100 1097900 1217500 1857200 2 2 1 2 2 2 2 2 2 2 2 1753100 2995100 60690 3287500 1756300 2562300 2206000 1169800 993480 1250000 1956200 1632700 2795900 194310 3322300 1698500 2623800 2176600 1262100 1097900 1217500 1857200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 334630000 334630000 0 13309 1544 12357 70297 85027;85028 85027 2 MDPNTIIEALR Acetyl (Protein N-term);Oxidation (M) 1329.6599 0.65985126 425 O95373 IPO7 Importin-7 yes yes 1 0 1 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 76.062 75.959 2 6.2605E-12 26072 20211116_3429_TMUAki_TMT10x_P_F2 159.58 142.34 4972000 8157900 113430 7474800 5824800 8152700 6159800 5889800 5426000 5797100 6484800 4630300 7609600 523760 7683900 5600000 8212800 6207900 6099700 5589700 5665600 6222900 4 4 3 4 4 4 4 4 4 4 4 2561000 3992600 79181 3808900 2799900 5323200 3128300 2965400 2775200 2957700 3387000 2385100 3724900 289470 3921400 2697800 5276500 3145100 3133700 2860400 2888900 3248300 2 2 2 2 2 2 2 2 2 2 2 2411000 4165300 34248 3665800 3024800 2829500 3031500 2924400 2650800 2839400 3097900 2245100 3884800 234300 3762500 2902200 2936300 3062800 2966000 2729300 2776600 2974600 2 2 1 2 2 2 2 2 2 2 2 1347800000 682590000 665200000 13310 425 12358 70298;70299;70300;70301 85029;85030;85031;85032 85029 319 4 MDPNTIIEALR Acetyl (Protein N-term) 1313.6649 0.66493664 425 O95373 IPO7 Importin-7 yes yes 1 0 0 0 By MS/MS By MS/MS 2.8 0.748 2 2 1 2 3 81.697 81.671 2 2.161E-14 28423 20211116_3429_TMUAki_TMT10x_P_F2 145.17 124.55 3356000 5688500 43978 5339200 4357300 4604400 4700900 3326200 3312700 3846700 4745000 3124800 5306600 306440 5460500 4187600 4707300 4707400 3462000 3481600 3735400 4533000 4 4 1 4 4 4 4 4 4 4 4 971110 1600800 43978 1533800 1022200 1687900 1202400 841560 899710 982790 1261900 904530 1493400 122210 1571800 987340 1691000 1200800 902590 941400 954030 1206100 1 1 1 1 1 1 1 1 1 1 1 2384800 4087700 0 3805400 3335100 2916500 3498500 2484600 2413000 2863900 3483100 2220300 3813200 184220 3888700 3200200 3016300 3506500 2559400 2540200 2781400 3326900 3 3 0 3 3 3 3 3 3 3 3 1480000000 371810000 1108200000 13311 425 12358 70302;70303;70304;70305;70306 85033;85034;85035;85036;85037 85033 5 MDQAIIFCR Oxidation (M) 1168.5369 0.53689935 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 1 0 By MS/MS By MS/MS 5.18 1.47 2 2 2 2 3 5 6 45.962 46.137 2 0.0002274 13110 20211116_3442_TMUAki_TMT10x_S_F4 137.14 108.44 31181000 48670000 67778 54525000 44124000 46479000 31006000 32158000 29802000 26459000 38432000 29031000 45436000 2528400 55091000 41963000 47524000 32100000 33248000 30678000 26076000 36806000 8 8 2 8 8 8 8 8 8 8 8 18608000 28440000 67778 32876000 32755000 36598000 21271000 18591000 17947000 15751000 23124000 17325000 26554000 1644700 33282000 31112000 36649000 22074000 19726000 18587000 15501000 22147000 5 5 2 5 5 5 5 5 5 5 5 12573000 20231000 0 21649000 11369000 9881100 9735400 13567000 11855000 10707000 15308000 11706000 18883000 883680 21809000 10851000 10875000 10026000 13522000 12090000 10575000 14660000 3 3 0 3 3 3 3 3 3 3 3 7160900000 4970600000 2190300000 13312 2334 12359 70307;70308;70309;70310;70311;70312;70313;70314;70315;70316;70317 85038;85039;85040;85041;85042;85043;85044;85045;85046;85047;85048 85044 2679 11 MDQAIIFCR Unmodified 1152.542 0.54198473 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 By MS/MS By MS/MS 6.4 1.36 1 2 2 2 3 6 4 57.159 57.392 2 3.2107E-05 17188 20211116_3436_TMUAki_TMT10x_P_F8 115.71 90.542 107820000 171580000 526170 196590000 131510000 129040000 104600000 65775000 51145000 62941000 110840000 100390000 160200000 9375100 197780000 125430000 134210000 105850000 69984000 56488000 61588000 105070000 11 11 7 11 11 11 11 11 11 11 11 66097000 103300000 303640 118460000 93309000 99798000 73050000 39220000 29506000 37312000 66100000 61543000 96450000 5895200 119500000 88962000 101460000 73809000 42876000 33221000 36519000 62631000 6 6 4 6 6 6 6 6 6 6 6 41724000 68278000 222530 78130000 38205000 29247000 31552000 26555000 21638000 25629000 44735000 38850000 63748000 3479900 78279000 36470000 32749000 32046000 27108000 23267000 25069000 42440000 5 5 3 5 5 5 5 5 5 5 5 14196000000 6891700000 7304700000 13313 2334 12359 70318;70319;70320;70321;70322;70323;70324;70325;70326;70327 85049;85050;85051;85052;85053;85054;85055;85056;85057;85058;85059;85060;85061 85056 13 MDRGEQGLLR Acetyl (Protein N-term) 1215.603 0.60300508 1243 P55327-4;P55327-2 TPD52 Tumor protein D52 yes no 1 0 0 1 By MS/MS 2 0 1 1 37.419 37.518 2 0.00010833 9134 20211116_3440_TMUAki_TMT10x_S_F2 73.573 49.78 479730 837150 18420 955750 458010 400240 454810 595530 683710 514240 689970 446820 781600 56635 958340 440200 446390 468580 593210 685760 505580 665390 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 479730 837150 18420 955750 458010 400240 454810 595530 683710 514240 689970 446820 781600 56635 958340 440200 446390 468580 593210 685760 505580 665390 2 2 2 2 2 2 2 2 2 2 2 8069700 0 8069700 13314 1243 12360 70328 85062;85063 85062 2 MDSFDEDLARPSGLLAQER Oxidation (M) 2165.0059 0.005896599 3252 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 1 1 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 56.803 56.663 3 5.776E-18 18741 20211116_3430_TMUAki_TMT10x_P_F3 156.08 142.8 23116000 42992000 71516 38132000 31634000 48430000 29998000 48335000 44869000 42284000 39505000 21522000 40098000 1705100 39398000 30284000 48700000 30974000 48968000 44806000 41547000 38275000 12 12 2 12 12 12 12 12 12 12 12 12620000 22808000 52697 19397000 18793000 35140000 18675000 26258000 23887000 22525000 21135000 11749000 21269000 816860 20265000 18010000 34628000 19110000 27034000 23975000 22153000 20473000 6 6 1 6 6 6 6 6 6 6 6 10496000 20185000 18819 18735000 12842000 13290000 11323000 22077000 20982000 19759000 18370000 9772600 18829000 888210 19134000 12274000 14072000 11864000 21934000 20831000 19394000 17802000 6 6 1 6 6 6 6 6 6 6 6 6869200000 3896300000 2972900000 13315 3252 12361 70329;70330;70331;70332;70333;70334;70335;70336 85064;85065;85066;85067;85068;85069;85070;85071;85072;85073;85074;85075;85076 85067 3227 13 MDSFDEDLARPSGLLAQER Unmodified 2149.011 0.010981977 3252 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 0 1 By MS/MS By MS/MS 2.71 1.03 1 2 2 2 4 3 63.984 63.64 3 8.9536E-62 20459 20211116_3442_TMUAki_TMT10x_S_F4 227.95 201.11 15298000 25193000 166380 24880000 18938000 22063000 18824000 12363000 10419000 13868000 18831000 14245000 23507000 1474400 25361000 18166000 22432000 18839000 13104000 11266000 13482000 17905000 5 5 5 5 5 5 5 5 5 5 5 9025300 14562000 92858 13806000 10911000 16131000 11953000 7442000 6487300 8204600 10783000 8404200 13585000 861220 14173000 10494000 16094000 11901000 8027900 6991300 7981700 10269000 3 3 3 3 3 3 3 3 3 3 3 6272800 10631000 73526 11073000 8026600 5932300 6870900 4920600 3931400 5662900 8047700 5841100 9921400 613140 11188000 7671700 6337800 6938900 5076200 4274300 5500100 7635900 2 2 2 2 2 2 2 2 2 2 2 2252000000 1346600000 905360000 13316 3252 12361 70337;70338;70339;70340;70341;70342;70343 85077;85078;85079;85080;85081;85082;85083;85084;85085 85085 9 MDSLLIAGQINTYCQNIK Oxidation (M) 2097.0235 0.023460919 186 O15372 EIF3H Eukaryotic translation initiation factor 3 subunit H yes yes 0 0 1 0 By MS/MS 7 0 1 1 69.571 69.848 3 8.8454E-05 24001 20211116_3446_TMUAki_TMT10x_S_F7 74.428 59.274 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13317 186 12362 70344 85086 85086 141 1 MDSTANEVEAVK Oxidation (M) 1308.5867 0.5867459 533 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 1 0 By MS/MS 2 0 1 1 38.264 38.015 3 0.069425 10714 20211116_3429_TMUAki_TMT10x_P_F2 41.644 25.42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13318 533 12363 70345 85087 85087 458 1 MDSTLTASEIR Acetyl (Protein N-term);Oxidation (M) 1280.5918 0.59183127 1104 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 1 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 42.104 42.013 2 1.4972E-08 10777 20211116_3428_TMUAki_TMT10x_P_F1 120.99 87.868 2058000 3105200 16529 3479600 3845700 3313300 2273500 2242400 2232300 1836100 2953900 1916000 2898900 164310 3520900 3645900 3361600 2387000 2321800 2298400 1810000 2827200 3 3 1 3 3 3 3 3 3 3 3 1736400 2534900 0 2828200 3569800 3071600 2008400 1781500 1688300 1402000 2438300 1616400 2366400 122880 2868200 3380600 3085100 2109000 1865100 1758100 1384900 2328900 2 2 0 2 2 2 2 2 2 2 2 321560 570350 16529 651400 275880 241710 265060 460870 544030 434090 515570 299530 532500 41424 652680 265250 276430 278060 456720 540240 425060 498230 1 1 1 1 1 1 1 1 1 1 1 215110000 156630000 58486000 13319 1104 12364 70346;70347 85088;85089;85090 85088 1466 3 MDSTLTASEIR Acetyl (Protein N-term) 1264.5969 0.59691665 1104 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 1 0 0 0 By MS/MS 1 0 1 1 55.397 55.097 2 0.054808 18170 20211116_3439_TMUAki_TMT10x_S_F1 51.092 28.6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13320 1104 12364 70348 85091 85091 1 MDSTNADALYVR Oxidation (M) 1370.6136 0.61362935 2590 Q99615;Q99615-2 DNAJC7 DnaJ homolog subfamily C member 7 yes no 0 0 1 0 By MS/MS By MS/MS 3 0.894 2 1 2 1 4 37.995 37.967 2 8.8293E-08 9274 20211116_3440_TMUAki_TMT10x_S_F2 139.78 91.618 673730 1032600 3514.9 1446400 2740300 1351800 887330 845690 1164000 649740 1220500 627300 965030 83445 1444900 2580800 1371600 1005500 879520 1174000 642640 1175600 3 3 1 3 3 3 3 3 3 3 3 420030 603920 3514.9 895870 2519800 1168900 654790 515240 745650 401810 781640 391110 564620 67507 897400 2369400 1159300 764510 553450 755870 397100 752910 1 1 1 1 1 1 1 1 1 1 1 253700 428630 0 550530 220510 182900 232540 330450 418320 247930 438810 236180 400410 15938 547520 211440 212320 241000 326070 418170 245540 422670 2 2 0 2 2 2 2 2 2 2 2 105560000 38484000 67071000 13321 2590 12365 70349;70350;70351;70352;70353 85092;85093 85092 2825 2 MDTDLETMDLDQGGEALAPR 2 Oxidation (M) 2208.9515 0.95147777 352 O75643;O75643-2 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 0 0 2 0 By MS/MS By MS/MS 1.67 0.943 2 1 1 2 53.975 53.749 3 1.047E-12 17588 20211116_3439_TMUAki_TMT10x_S_F1 122.22 110.16 3241700 6069500 0 6623700 5056300 8189600 4415000 4986100 5655300 4690900 5066300 3017700 5665600 213030 6741500 4826900 8174400 4550200 5222300 5678100 4593500 4905600 3 3 0 3 3 3 3 3 3 3 3 2433800 4613100 0 4859700 4352400 7437200 3754500 3696900 4110100 3435600 3872300 2265500 4305400 151760 4978800 4153300 7333500 3850600 3939700 4157300 3366100 3742800 2 2 0 2 2 2 2 2 2 2 2 807950 1456500 0 1764000 703940 752400 660440 1289200 1545200 1255300 1194100 752250 1360200 61265 1762700 673600 840960 699580 1282700 1520800 1227300 1162700 1 1 0 1 1 1 1 1 1 1 1 1282400000 826270000 456150000 13322 352 12366 70354;70355;70356 85094;85095;85096 85096 264;265 3 MDTLAHVLYYPQKPLVTTR Oxidation (M) 2261.1878 0.18782413 881 P30876 POLR2B DNA-directed RNA polymerase II subunit RPB2 yes yes 0 0 1 1 By matching By MS/MS 3 0 2 1 1 57.728 57.411 4 0.00023763 20162 20211116_3441_TMUAki_TMT10x_S_F3 65.097 55.175 2050000 3217700 61328 3410700 2183500 2026500 1912100 2978000 3039700 2458100 2626700 1909200 3003200 228980 3445200 2090500 2171200 1988700 2964200 3028400 2422100 2546600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2050000 3217700 61328 3410700 2183500 2026500 1912100 2978000 3039700 2458100 2626700 1909200 3003200 228980 3445200 2090500 2171200 1988700 2964200 3028400 2422100 2546600 1 1 1 1 1 1 1 1 1 1 1 1114500000 763410000 351050000 13323 881 12367 70357;70358 85097 85097 1054 1 MDVGELLSYQPNR Acetyl (Protein N-term);Oxidation (M) 1578.7348 0.73480712 2328 Q8WYA6 CTNNBL1 Beta-catenin-like protein 1 yes yes 1 0 1 0 By MS/MS By matching 2 0 2 1 1 70.808 70.585 2 2.9731E-07 23999 20211116_3429_TMUAki_TMT10x_P_F2 82.417 75.21 2494700 4388800 0 3974400 2392800 4888100 2963300 2373500 2574400 2751900 3185200 2322000 4093700 101110 4097500 2301900 4866800 2963900 2551500 2657700 2672000 3053800 1 1 0 1 1 1 1 1 1 1 1 2494700 4388800 0 3974400 2392800 4888100 2963300 2373500 2574400 2751900 3185200 2322000 4093700 101110 4097500 2301900 4866800 2963900 2551500 2657700 2672000 3053800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 582940000 287680000 295260000 13324 2328 12368 70359;70360 85098 85098 2673 1 MDVLAEEFGNLTPEQLAAPIPTVEEK Acetyl (Protein N-term);Oxidation (M) 2898.4209 0.42085635 2982 Q9NW08 POLR3B DNA-directed RNA polymerase III subunit RPC2 yes yes 1 0 1 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 82.372 82.358 3 2.1837E-08 28718 20211116_3429_TMUAki_TMT10x_P_F2 55.061 44.662 1300800 2224200 39861 2055100 1681900 2032800 1843900 1554100 1434000 1479800 1831200 1211400 2074800 148660 2108100 1619000 2061500 1849200 1602000 1490900 1448300 1754200 3 3 2 3 3 3 3 3 3 3 3 484090 749400 0 775910 455670 1032800 628920 550220 546080 562990 620950 450720 699360 38066 793530 441160 1025400 626320 584160 561830 549320 596690 1 1 0 1 1 1 1 1 1 1 1 816690 1474800 39861 1279200 1226200 1000000 1215000 1003800 887950 916850 1210200 760710 1375400 110590 1314600 1177900 1036000 1222800 1017800 929080 899030 1157500 2 2 2 2 2 2 2 2 2 2 2 246700000 123020000 123680000 13325 2982 12369 70361;70362;70363 85099;85100;85101 85099 3062 3 MDWQPDEQGLQQVLQLLK Acetyl (Protein N-term);Oxidation (M) 2226.0991 0.099068703 134 O14787-2;O14787 TNPO2 Transportin-2 yes no 1 0 1 0 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 84.546 84.55 3 6.5132E-06 28549 20211116_3431_TMUAki_TMT10x_P_F4 79.771 68.331 1314300 2110200 31150 1947600 1276100 2451900 1602800 1238000 1216600 1311200 1639900 1223900 1968500 132870 2005900 1233400 2439500 1596800 1322100 1269600 1277600 1568900 3 3 2 3 3 3 3 3 3 3 3 1314300 2110200 31150 1947600 1276100 2451900 1602800 1238000 1216600 1311200 1639900 1223900 1968500 132870 2005900 1233400 2439500 1596800 1322100 1269600 1277600 1568900 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 126290000 126290000 0 13326 134 12370 70364;70365;70366 85102;85103;85104;85105 85104 98 4 MDYEDDRLR Oxidation (M) 1227.519 0.51900068 1026 P43243 MATR3 Matrin-3 yes yes 0 0 1 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 30.077 30.022 3 0.00035736 6007 20211116_3428_TMUAki_TMT10x_P_F1 117.3 94.77 905160 1564000 6419.3 1478500 2155600 1559500 1134800 923620 1037600 844340 1325400 842790 1459100 91743 1515500 2041100 1569400 1201400 968790 1070000 827900 1269700 3 3 1 3 3 3 3 3 3 3 3 601590 999360 6419.3 982130 1834000 1225300 730360 582350 679690 544390 875390 560170 932440 70492 1006800 1731000 1218800 796980 623400 700630 533240 838390 2 2 1 2 2 2 2 2 2 2 2 303570 564680 0 496350 321580 334220 404420 341280 357880 299960 450030 282620 526660 21251 508760 310150 350640 404450 345390 369380 294660 431270 1 1 0 1 1 1 1 1 1 1 1 117860000 88075000 29781000 13327 1026 12371 70367;70368;70369 85106;85107;85108 85106 1325 3 MDYEDDRLR Unmodified 1211.5241 0.52408606 1026 P43243 MATR3 Matrin-3 yes yes 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 34.474 34.396 3 0.00066512 9279 20211116_3429_TMUAki_TMT10x_P_F2 100.48 64.966 951250 1445900 905.34 1769600 2059600 1616600 1155200 908020 1020700 808640 1301200 885680 1350400 90169 1780100 1951800 1640400 1214900 956000 1054200 793860 1246600 2 2 1 2 2 2 2 2 2 2 2 655840 971820 0 1229100 1762500 1369700 804220 589520 683360 512250 888110 610610 907770 64811 1237800 1665600 1369200 862120 636440 707760 503470 850390 1 1 0 1 1 1 1 1 1 1 1 295410 474110 905.34 540510 297020 246890 350970 318500 337310 296400 413140 275070 442640 25358 542330 286210 271240 352760 319560 346440 290390 396190 1 1 1 1 1 1 1 1 1 1 1 80292000 68990000 11303000 13328 1026 12371 70370;70371;70372 85109;85110 85109 2 MDYEDDRLRDGER Oxidation (M) 1684.7111 0.71111156 1026 P43243 MATR3 Matrin-3 yes yes 0 0 1 2 By MS/MS 1.5 0.5 1 1 2 28.584 28.467 4 0.0016307 5401 20211116_3428_TMUAki_TMT10x_P_F1 71.558 58.931 60000 81418 1543.8 75354 100850 102510 64941 57609 68853 51795 85440 55877 75949 6985.2 77708 95888 101750 67871 60665 70463 50825 81907 1 1 1 1 1 1 1 1 1 1 1 60000 81418 1543.8 75354 100850 102510 64941 57609 68853 51795 85440 55877 75949 6985.2 77708 95888 101750 67871 60665 70463 50825 81907 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6918800 6918800 0 13329 1026 12372 70373;70374 85111 85111 1325 1 MDYVEINIDHK Oxidation (M) 1391.6391 0.63911582 1467 Q00341;Q00341-2 HDLBP Vigilin yes no 0 0 1 0 By matching By MS/MS 3.67 0.471 1 2 1 2 46.875 47.038 3 0.00020706 13559 20211116_3442_TMUAki_TMT10x_S_F4 87.719 75.159 2095600 3501700 51511 3916400 2370100 1875300 1646800 2572800 2504300 2253700 2904900 1951600 3269000 225590 3935600 2257500 2052000 1734800 2571100 2524400 2214200 2789800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2095600 3501700 51511 3916400 2370100 1875300 1646800 2572800 2504300 2253700 2904900 1951600 3269000 225590 3935600 2257500 2052000 1734800 2571100 2524400 2214200 2789800 1 1 1 1 1 1 1 1 1 1 1 628230000 269940000 358290000 13330 1467 12373 70375;70376;70377 85112;85113 85113 1970 2 MEAARPSGSWNGALCR Carbamidomethyl (C);Oxidation (M) 1834.8203 0.82028486 1494 Q02487;Q02487-2 DSC2 Desmocollin-2 yes no 0 1 1 1 By MS/MS 4 0 1 1 72.828 72.694 2 0.0012653 24165 20211116_3442_TMUAki_TMT10x_S_F4 65.719 26.572 1209600 2224100 0 2274800 1674700 1327600 1883700 919200 707370 916380 1862800 1126100 2075500 82309 2302900 1609400 1401700 1863400 955110 812100 895100 1761200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1209600 2224100 0 2274800 1674700 1327600 1883700 919200 707370 916380 1862800 1126100 2075500 82309 2302900 1609400 1401700 1863400 955110 812100 895100 1761200 1 1 0 1 1 1 1 1 1 1 1 372700000 0 372700000 13331 1494 12375 70378 85114 85114 12 2026 1 MEAFQELR Acetyl (Protein N-term);Oxidation (M) 1080.491 0.49099502 2507 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 1 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 51.518 51.379 2 0.00049667 16605 20211116_3439_TMUAki_TMT10x_S_F1 101.64 76.72 1796600 2869000 58163 3336200 2363600 2927000 1972700 2432200 2162500 2133200 2501900 1673200 2678900 211100 3364400 2260000 2995900 2027300 2488900 2203700 2095700 2403000 2 2 2 2 2 2 2 2 2 2 2 876950 1469000 28872 1548000 1661600 2089200 1143000 1427600 1159400 1200900 1272300 816740 1371100 110600 1581700 1582000 2080100 1187000 1478100 1182800 1182200 1223800 1 1 1 1 1 1 1 1 1 1 1 919620 1400000 29291 1788300 701990 837720 829760 1004600 1003100 932290 1229600 856480 1307800 100490 1782700 678080 915800 840350 1010800 1020900 913500 1179100 1 1 1 1 1 1 1 1 1 1 1 381320000 312280000 69039000 13332 2507 12376 70379;70380 85115;85116 85116 2781 2 MEALILEPSLYTVK Acetyl (Protein N-term);Oxidation (M) 1663.8743 0.87426071 1321 P61923;P61923-5 COPZ1 Coatomer subunit zeta-1 yes no 1 0 1 0 By MS/MS By MS/MS 3.71 1.03 1 2 2 2 3 4 80.273 80.251 2 7.3554E-15 29329 20211116_3441_TMUAki_TMT10x_S_F3 115.18 93.089 18433000 31104000 129340 27986000 21343000 30891000 22520000 19277000 20280000 20784000 24665000 17162000 29012000 1524900 28814000 20492000 31030000 22712000 20230000 20885000 20237000 23658000 6 6 3 6 6 6 6 6 6 6 6 11574000 18947000 87872 17507000 10852000 21371000 13109000 11464000 11898000 12459000 14878000 10777000 17674000 963170 18019000 10463000 21311000 13141000 12186000 12263000 12127000 14260000 4 4 2 4 4 4 4 4 4 4 4 6858100 12157000 41468 10480000 10491000 9519600 9411300 7812500 8381600 8324600 9786900 6385100 11337000 561710 10795000 10029000 9718800 9570900 8044700 8621700 8109200 9397600 2 2 1 2 2 2 2 2 2 2 2 7659900000 3819700000 3840200000 13333 1321 12377 70381;70382;70383;70384;70385;70386;70387 85117;85118;85119;85120;85121;85122;85123 85121 1774 7 MEALILEPSLYTVK Acetyl (Protein N-term) 1647.8793 0.87934609 1321 P61923;P61923-5 COPZ1 Coatomer subunit zeta-1 yes no 1 0 0 0 By MS/MS By MS/MS 4.47 1.54 2 3 4 3 3 2 7 10 83.1 83.099 2;3 1.8988E-29 27341 20211116_3445_TMUAki_TMT10x_S_F6 154.35 130.99 40287000 60604000 200030 66930000 43979000 38600000 45980000 16066000 12821000 19635000 39722000 37509000 56574000 3210800 67409000 42207000 40565000 45508000 17578000 15448000 19029000 37486000 20 20 10 20 20 20 20 20 20 20 20 23126000 34639000 126890 37372000 20682000 25837000 24854000 9079700 7679100 11298000 22592000 21532000 32332000 1896500 37760000 19937000 26656000 24460000 10144000 9092800 10943000 21332000 9 9 6 9 9 9 9 9 9 9 9 17161000 25965000 73145 29558000 23296000 12763000 21126000 6985800 5141600 8336800 17130000 15977000 24242000 1314400 29649000 22270000 13908000 21048000 7434700 6355600 8086500 16154000 11 11 4 11 11 11 11 11 11 11 11 4796700000 2200100000 2596600000 13334 1321 12377 70388;70389;70390;70391;70392;70393;70394;70395;70396;70397;70398;70399;70400;70401;70402;70403;70404 85124;85125;85126;85127;85128;85129;85130;85131;85132;85133;85134;85135;85136;85137;85138;85139;85140;85141;85142;85143 85141 20 MEALIPVINK Acetyl (Protein N-term);Oxidation (M) 1184.6475 0.64749566 87 O00429;O00429-2;O00429-4;O00429-3;O00429-5;O00429-9;O00429-8;O00429-6 DNM1L Dynamin-1-like protein yes no 1 0 1 0 By MS/MS 4 0 1 1 73.834 73.88 2 0.0024059 24206 20211116_3431_TMUAki_TMT10x_P_F4 47.082 28.397 13181000 22570000 0 21454000 17339000 27585000 16861000 14943000 14666000 15695000 16611000 12271000 21056000 963120 22057000 16601000 27439000 17059000 15853000 15086000 15297000 15964000 2 2 0 2 2 2 2 2 2 2 2 13181000 22570000 0 21454000 17339000 27585000 16861000 14943000 14666000 15695000 16611000 12271000 21056000 963120 22057000 16601000 27439000 17059000 15853000 15086000 15297000 15964000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 325930000 325930000 0 13335 87 12378 70405 85144;85145 85145 68 2 MEALIPVINK Acetyl (Protein N-term) 1168.6526 0.65258104 87 O00429;O00429-2;O00429-4;O00429-3;O00429-5;O00429-9;O00429-8;O00429-6 DNM1L Dynamin-1-like protein yes no 1 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 80.979 80.979 2 3.5065E-05 26518 20211116_3445_TMUAki_TMT10x_S_F6 91.065 64.989 15108000 23414000 115490 24123000 13145000 17685000 17823000 8312800 8005000 10223000 15582000 14066000 21850000 1139000 24463000 12716000 18203000 17530000 8982100 8842200 9905300 14796000 5 5 2 5 5 5 5 5 5 5 5 8599400 12996000 97341 13337000 7636200 11643000 9243500 5337400 5347800 6469300 8881900 8006700 12128000 684000 13557000 7361300 11824000 9171400 5778900 5736300 6271700 8458600 3 3 1 3 3 3 3 3 3 3 3 6508200 10418000 18153 10785000 5508900 6041400 8579300 2975400 2657300 3753300 6699700 6059200 9722500 455030 10906000 5354800 6378300 8358500 3203200 3105900 3633700 6337800 2 2 1 2 2 2 2 2 2 2 2 1755800000 859890000 895900000 13336 87 12378 70406;70407;70408;70409;70410;70411 85146;85147;85148;85149;85150 85150 5 MEATTAGVGRLEEEALR Acetyl (Protein N-term);Oxidation (M) 1889.9153 0.91529068 2298 Q8WUD4 CCDC12 Coiled-coil domain-containing protein 12 yes yes 1 0 1 1 By MS/MS By MS/MS 1 0 2 1 1 55.242 55.091 2 1.5999E-15 18157 20211116_3439_TMUAki_TMT10x_S_F1 132.69 117.42 1459600 2599600 4375.7 2468900 1829700 2727600 1567100 2453200 2355800 2091900 2157700 1359100 2425200 130280 2531700 1748100 2756600 1627700 2497300 2355100 2057900 2087600 2 2 2 2 2 2 2 2 2 2 2 818920 1334700 4227.6 1202400 1276300 2063200 1115400 1182300 1111500 955260 1030700 762530 1244900 78241 1248900 1220000 2028900 1139700 1239800 1128100 942320 996780 1 1 1 1 1 1 1 1 1 1 1 640720 1264900 148.07 1266500 553400 664470 451640 1270900 1244300 1136600 1127000 596580 1180300 52035 1282900 528080 727680 487980 1257500 1227000 1115600 1090800 1 1 1 1 1 1 1 1 1 1 1 507680000 292020000 215650000 13337 2298 12379 70412;70413 85151;85152 85152 2661 2 MEDDKVAEAAIQIFR Oxidation (M) 1750.856 0.85598488 1875 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 0 0 1 1 By MS/MS By MS/MS 2.75 0.433 1 3 3 1 69.625 69.254 3 0.0011816 23395 20211116_3429_TMUAki_TMT10x_P_F2 69.805 57.782 5670800 9380400 86420 8350600 6998200 10356000 6981100 8656900 7554200 8419800 7868800 5280700 8749000 569280 8621700 6715000 10388000 7099800 8880300 7671200 8233000 7581000 2 2 2 2 2 2 2 2 2 2 2 3217700 4926600 41394 4262900 3560500 7146900 3999700 4572900 4155400 4575600 4317300 2996300 4594500 310150 4438900 3427500 7045000 4038900 4779400 4226400 4468600 4159700 1 1 1 1 1 1 1 1 1 1 1 2453100 4453800 45026 4087700 3437800 3208900 2981300 4084000 3398700 3844200 3551500 2284400 4154500 259130 4182800 3287500 3342800 3060900 4100900 3444800 3764400 3421200 1 1 1 1 1 1 1 1 1 1 1 703550000 323130000 380420000 13338 1875 12380 70414;70415;70416;70417 85153;85154;85155;85156 85153 2495 4 MEDMNEYSNIEEFAEGSK Acetyl (Protein N-term);2 Oxidation (M) 2195.8511 0.85109502 152 O14979-3;O14979-2 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes no 1 0 2 0 By MS/MS By MS/MS 1.2 0.4 4 1 2 3 73.762 73.702 2;3 8.7379E-41 23650 20211116_3428_TMUAki_TMT10x_P_F1 188.59 188.59 31739000 56744000 181240 49418000 33801000 56891000 36979000 49933000 52885000 49067000 46624000 29552000 52921000 2096900 51044000 32487000 57339000 37836000 51093000 52883000 47957000 45170000 8 8 3 8 8 8 8 8 8 8 8 16879000 30153000 0 25318000 16467000 37849000 19448000 26761000 28922000 25567000 24121000 15715000 28118000 778220 26357000 15858000 37536000 19864000 27733000 28838000 25019000 23418000 3 3 0 3 3 3 3 3 3 3 3 14861000 26591000 181240 24100000 17333000 19042000 17531000 23172000 23963000 23501000 22502000 13837000 24803000 1318700 24686000 16628000 19804000 17972000 23361000 24045000 22939000 21752000 5 5 3 5 5 5 5 5 5 5 5 13854000000 7302200000 6551600000 13339 152 12382 70418;70419;70420;70421;70422 85157;85158;85159;85160;85161;85162;85163;85164 85158 106;107 8 MEDMNEYSNIEEFAEGSK Acetyl (Protein N-term);Oxidation (M) 2179.8562 0.8561804 152 O14979-3;O14979-2 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes no 1 0 1 0 By MS/MS By MS/MS 1.43 0.728 5 1 1 5 2 60.519 60.461 2;3 8.8154E-18 27293 20211116_3439_TMUAki_TMT10x_S_F1 137.59 122.9 10313000 18454000 0 17175000 11310000 12498000 12457000 6664800 5458300 7642000 12059000 9601800 17215000 788120 17542000 10868000 12890000 12359000 7100000 6093300 7423300 11429000 5 5 0 5 5 5 5 5 5 5 5 4234700 7357700 0 7352900 3939500 6955900 5297700 2981100 2260500 2950000 5052200 3942500 6865500 299230 7495600 3808500 7021400 5208700 3230600 2531600 2882400 4787300 3 3 0 3 3 3 3 3 3 3 3 6078400 11097000 0 9822200 7370100 5542400 7159000 3683700 3197800 4692000 7006800 5659300 10349000 488900 10046000 7059300 5868400 7150100 3869400 3561700 4540900 6641300 2 2 0 2 2 2 2 2 2 2 2 2370300000 1175200000 1195100000 13340 152 12382 70423;70424;70425;70426;70427;70428;70429 85165;85166;85167;85168;85169;85170 85170 106;107 6 MEDSASASLSSAAATGTSTSTPAAPTAR Acetyl (Protein N-term);Oxidation (M) 2654.1977 0.19773271 377 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 1 0 1 0 By MS/MS By MS/MS 2.8 0.748 2 2 1 2 3 47.516 47.403 3 3.9861E-34 16005 20211116_3441_TMUAki_TMT10x_S_F3 135.58 130.92 7752600 12874000 78196 18888000 11485000 9948100 6738700 9374000 13915000 8544200 12693000 7218700 12035000 723030 18710000 10894000 10673000 7305600 9535000 13799000 8378900 12282000 7 7 4 7 7 7 7 7 7 7 7 2645500 4133400 0 5962600 9664300 7858900 5486200 2973600 4718100 2695900 4303700 2462900 3863700 272770 5982000 9158600 7779400 5759600 3261600 4818700 2644400 4164400 3 3 0 3 3 3 3 3 3 3 3 5107100 8740600 78196 12925000 1820300 2089200 1252500 6400400 9196900 5848200 8389200 4755800 8171600 450260 12728000 1735800 2893600 1546100 6273400 8980000 5734500 8117800 4 4 4 4 4 4 4 4 4 4 4 1583400000 961110000 622260000 13341 377 12383 70430;70431;70432;70433;70434 85171;85172;85173;85174;85175;85176;85177 85177 292 7 MEDSMDMDMSPLRPQNYLFGCELK Acetyl (Protein N-term);4 Oxidation (M) 3012.232 0.23195142 524 P06748;P06748-3;P06748-2 NPM1 Nucleophosmin yes no 1 0 4 1 By MS/MS By MS/MS 3.26 1.29 2 5 6 6 3 1 13 10 77.719 77.65 2;3;4 1.8918E-16 24520 20211116_3431_TMUAki_TMT10x_P_F4 123.29 118.58 53415000 97107000 374390 68871000 60601000 166770000 67602000 183630000 222290000 174760000 110970000 49736000 90506000 3624600 73718000 58294000 164230000 72994000 185590000 215420000 171040000 110500000 38 38 22 38 38 38 38 38 38 38 38 33782000 59250000 169000 41944000 30380000 119890000 37319000 109830000 135920000 105140000 65624000 31455000 55222000 1734900 45178000 29308000 117100000 40544000 112030000 131470000 102880000 65481000 21 21 10 21 21 21 21 21 21 21 21 19633000 37857000 205390 26927000 30221000 46878000 30283000 73808000 86368000 69617000 45347000 18281000 35284000 1889600 28540000 28987000 47131000 32450000 73559000 83955000 68164000 45015000 17 17 12 17 17 17 17 17 17 17 17 46787000000 26436000000 20350000000 13342 524 12384 70435;70436;70437;70438;70439;70440;70441;70442;70443;70444;70445;70446;70447;70448;70449;70450;70451;70452;70453;70454;70455;70456;70457 85178;85179;85180;85181;85182;85183;85184;85185;85186;85187;85188;85189;85190;85191;85192;85193;85194;85195;85196;85197;85198;85199;85200;85201;85202;85203;85204;85205;85206;85207;85208;85209;85210;85211;85212;85213;85214;85215;85216 85195 439;440;441;442 39 MEDSMDMDMSPLRPQNYLFGCELK Acetyl (Protein N-term);3 Oxidation (M) 2996.237 0.2370368 524 P06748;P06748-3;P06748-2 NPM1 Nucleophosmin yes no 1 0 3 1 By MS/MS By MS/MS 3.06 1.14 4 4 16 7 2 1 18 16 69.1 69.052 2;3 4.0178E-11 25704 20211116_3431_TMUAki_TMT10x_P_F4 103.21 98.322 50801000 86481000 401890 73832000 58039000 86841000 63180000 46071000 38593000 57018000 64885000 47301000 80648000 4314000 76409000 55780000 86749000 63056000 49228000 41270000 55236000 61778000 33 33 15 33 33 33 33 33 33 33 33 27379000 44578000 178510 38655000 24432000 54232000 29228000 23388000 18947000 28720000 33313000 25493000 41574000 2203100 40086000 23545000 53594000 29078000 25496000 20235000 27830000 31691000 17 17 7 17 17 17 17 17 17 17 17 23422000 41903000 223380 35177000 33607000 32609000 33952000 22683000 19646000 28298000 31572000 21808000 39074000 2111000 36323000 32235000 33155000 33978000 23732000 21035000 27406000 30087000 16 16 8 16 16 16 16 16 16 16 16 36054000000 18431000000 17623000000 13343 524 12384 70458;70459;70460;70461;70462;70463;70464;70465;70466;70467;70468;70469;70470;70471;70472;70473;70474;70475;70476;70477;70478;70479;70480;70481;70482;70483;70484;70485;70486;70487;70488;70489;70490;70491 85217;85218;85219;85220;85221;85222;85223;85224;85225;85226;85227;85228;85229;85230;85231;85232;85233;85234;85235;85236;85237;85238;85239;85240;85241;85242;85243;85244;85245;85246;85247;85248;85249;85250;85251 85233 439;440;441;442 35 MEDSMDMDMSPLRPQNYLFGCELK Acetyl (Protein N-term);2 Oxidation (M) 2980.2421 0.24212218 524 P06748;P06748-3;P06748-2 NPM1 Nucleophosmin yes no 1 0 2 1 By MS/MS By MS/MS 3 1.2 3 2 7 4 2 9 9 75.321 75.286 2;3 1.599E-18 26449 20211116_3442_TMUAki_TMT10x_S_F4 141.85 128.71 72626000 116600000 482390 118110000 79901000 81617000 90534000 30274000 24748000 41115000 75332000 67621000 108810000 5952800 119840000 76869000 84243000 89240000 33696000 29851000 39708000 71104000 24 24 10 24 24 24 24 24 24 24 24 37773000 58595000 241790 59332000 34908000 50601000 43766000 16443000 12788000 21698000 37799000 35170000 54679000 3051500 60346000 33692000 51320000 42971000 18599000 15252000 20975000 35689000 11 11 6 11 11 11 11 11 11 11 11 34853000 58006000 240590 58781000 44993000 31016000 46768000 13832000 11961000 19417000 37533000 32450000 54129000 2901200 59497000 43178000 32923000 46269000 15097000 14598000 18733000 35415000 13 13 4 13 13 13 13 13 13 13 13 27653000000 13959000000 13694000000 13344 524 12384 70492;70493;70494;70495;70496;70497;70498;70499;70500;70501;70502;70503;70504;70505;70506;70507;70508;70509 85252;85253;85254;85255;85256;85257;85258;85259;85260;85261;85262;85263;85264;85265;85266;85267;85268;85269;85270;85271;85272;85273;85274;85275;85276 85272 439;440;441;442 25 MEDSMDMDMSPLRPQNYLFGCELK Acetyl (Protein N-term);Oxidation (M) 2964.2472 0.24720756 524 P06748;P06748-3;P06748-2 NPM1 Nucleophosmin yes no 1 0 1 1 By MS/MS By MS/MS 3.93 1.28 2 4 3 3 2 7 7 79.324 79.303 2;3 8.1337E-17 28927 20211116_3441_TMUAki_TMT10x_S_F3 129.93 122.73 71941000 108200000 109980 126710000 74514000 50356000 82140000 15878000 13080000 20915000 63135000 66979000 101030000 5264500 126820000 71591000 55234000 80781000 18035000 18105000 20220000 59355000 18 18 5 18 18 18 18 18 18 18 18 33946000 49198000 51246 58767000 32629000 28967000 38887000 7463800 6015200 9463600 29505000 31604000 45943000 2474000 58830000 31423000 30865000 38100000 8733800 8391500 9160200 27736000 10 10 3 10 10 10 10 10 10 10 10 37996000 59003000 58737 67947000 41885000 21388000 43252000 8414300 7064400 11452000 33630000 35375000 55089000 2790500 67989000 40169000 24369000 42681000 9300800 9713000 11059000 31619000 8 8 2 8 8 8 8 8 8 8 8 24763000000 12046000000 12718000000 13345 524 12384 70510;70511;70512;70513;70514;70515;70516;70517;70518;70519;70520;70521;70522;70523 85277;85278;85279;85280;85281;85282;85283;85284;85285;85286;85287;85288;85289;85290;85291;85292;85293;85294 85289 439;440;441;442 18 MEDSMDMDMSPLRPQNYLFGCELK Acetyl (Protein N-term) 2948.2523 0.25229293 524 P06748;P06748-3;P06748-2 NPM1 Nucleophosmin yes no 1 0 0 1 By MS/MS 6 0 1 1 80.274 80.274 3 0.0019856 26210 20211116_3445_TMUAki_TMT10x_S_F6 58.627 55.239 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13346 524 12384 70524 85295 85295 1 MEDSMDMDMSPLRPQNYLFGCELKADK Acetyl (Protein N-term);4 Oxidation (M) 3326.391 0.39097126 524 P06748;P06748-3;P06748-2 NPM1 Nucleophosmin yes no 1 0 4 2 By MS/MS By MS/MS 5 0.894 2 1 2 3 2 67.61 67.592 4 9.9443E-09 22054 20211116_3442_TMUAki_TMT10x_S_F4 90.137 84.17 6520200 12160000 50498 7951500 8760900 20013000 8635500 18452000 23214000 16822000 12207000 6070800 11331000 554610 8589400 8396000 19609000 9217200 18790000 22588000 16496000 12116000 4 4 3 4 4 4 4 4 4 4 4 5255900 9655400 41540 6561600 5995400 17554000 7046700 13941000 17250000 12758000 9432900 4893500 8997900 420410 7076800 5773400 17124000 7408600 14321000 16825000 12509000 9341600 3 3 2 3 3 3 3 3 3 3 3 1264300 2504600 8958.8 1389900 2765500 2458500 1588800 4510900 5964200 4064000 2773700 1177300 2332900 134200 1512600 2622600 2484700 1808600 4469500 5762900 3987500 2774500 1 1 1 1 1 1 1 1 1 1 1 4400600000 2889600000 1510900000 13347 524 12385 70525;70526;70527;70528;70529 85296;85297 85297 439;440;441;442 2 MEDSMDMDMSPLRPQNYLFGCELKADK Acetyl (Protein N-term);2 Oxidation (M) 3294.4011 0.40114202 524 P06748;P06748-3;P06748-2 NPM1 Nucleophosmin yes no 1 0 2 2 By MS/MS By matching 4 0.707 1 2 1 3 1 75.509 75.467 4 5.2543E-06 24934 20211116_3431_TMUAki_TMT10x_P_F4 73.341 66.692 6630400 10905000 43183 9398500 5906900 10106000 8165400 3727900 3213100 4202200 6745700 6173700 10170000 556130 9705000 5721700 10109000 8011100 4126400 3610800 4084600 6397900 2 2 1 2 2 2 2 2 2 2 2 6630400 10905000 43183 9398500 5906900 10106000 8165400 3727900 3213100 4202200 6745700 6173700 10170000 556130 9705000 5721700 10109000 8011100 4126400 3610800 4084600 6397900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1359800000 1065600000 294210000 13348 524 12385 70530;70531;70532;70533 85298;85299 85298 439;440;441;442 2 MEDYQAAEETAFVVDEVSNIVK Acetyl (Protein N-term);Oxidation (M) 2544.1578 0.15776537 1400 P63172 DYNLT1 Dynein light chain Tctex-type 1 yes yes 1 0 1 0 By MS/MS By MS/MS 1.71 0.7 3 3 1 4 3 84.354 84.349 2;3 9.1842E-129 28059 20211116_3428_TMUAki_TMT10x_P_F1 264.55 257.67 9752300 16139000 109140 14606000 9954400 15611000 11355000 10010000 10942000 11380000 12345000 9080800 15054000 866350 15024000 9583500 15716000 11431000 10501000 11199000 11058000 11865000 9 9 4 9 9 9 9 9 9 9 9 6560800 10814000 27264 9435800 5811400 12162000 6945300 7061300 7952500 8244400 8429100 6108700 10085000 525240 9764100 5600200 12107000 7016800 7472300 8063100 8003200 8116500 6 6 2 6 6 6 6 6 6 6 6 3191500 5325200 81878 5170300 4142900 3449000 4409200 2948200 2989500 3135500 3916000 2972100 4968400 341120 5259800 3983200 3608500 4414600 3028400 3136300 3054500 3748900 3 3 2 3 3 3 3 3 3 3 3 1879400000 1213400000 666000000 13349 1400 12386 70534;70535;70536;70537;70538;70539;70540 85300;85301;85302;85303;85304;85305;85306;85307;85308 85303 1878 9 MEEEILLLEDQNSK Unmodified 1689.8131 0.81311702 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS By matching 1 0 2 1 1 75.706 75.668 3 4.9178E-19 24490 20211116_3428_TMUAki_TMT10x_P_F1 164.22 138.9 7686000 12839000 18362 11169000 9121700 15646000 9734500 6644300 6810300 7953800 9317600 7156400 11974000 645440 11579000 8761000 15461000 9751500 7248900 7145200 7714100 8910800 3 3 1 3 3 3 3 3 3 3 3 7686000 12839000 18362 11169000 9121700 15646000 9734500 6644300 6810300 7953800 9317600 7156400 11974000 645440 11579000 8761000 15461000 9751500 7248900 7145200 7714100 8910800 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 661030000 407080000 253950000 13350 935 12387 70541;70542 85309;85310;85311 85310 3 MEEELQHSHCVNCVSR Acetyl (Protein N-term);Oxidation (M) 2071.851 0.85099264 2267 Q8TB52 FBXO30 F-box only protein 30 yes yes 1 0 1 0 By MS/MS By matching 1 0 2 1 1 28.663 28.704 3 1.3636E-10 5552 20211116_3428_TMUAki_TMT10x_P_F1 127.75 127.58 25904 42668 0 42644 49455 47433 21201 23395 22391 24250 30101 24119 39814 0 43577 46710 47486 23019 25026 23001 23649 28799 1 1 0 1 1 1 1 1 1 1 1 25904 42668 0 42644 49455 47433 21201 23395 22391 24250 30101 24119 39814 0 43577 46710 47486 23019 25026 23001 23649 28799 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7667300 5938700 1728600 13351 2267 12388 70543;70544 85312 85312 2649 1 MEEETEVRESEK Oxidation (M) 1510.6457 0.64571734 2796 Q9H307 PNN Pinin yes yes 0 0 1 1 By MS/MS By MS/MS 1 0 2 1 1 29.601 29.667 3 0.00024743 7813 20211116_3439_TMUAki_TMT10x_S_F1 88.101 65.216 113120 199430 0 186710 84662 88652 133550 45112 74558 72551 105570 105300 186050 6102.1 189910 82220 95383 131080 48886 79532 69727 100880 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 113120 199430 0 186710 84662 88652 133550 45112 74558 72551 105570 105300 186050 6102.1 189910 82220 95383 131080 48886 79532 69727 100880 1 1 0 1 1 1 1 1 1 1 1 6563200 0 6563200 13352 2796 12389 70545;70546 85313;85314 85314 2955 2 MEEIVEGCTGALHILAR Unmodified 1897.939 0.93900301 923 P35222;P14923 CTNNB1;JUP Catenin beta-1;Junction plakoglobin yes no 0 0 0 0 By MS/MS 6 0 1 1 67.954 67.928 3 0.011054 20813 20211116_3434_TMUAki_TMT10x_P_F6 48.677 34.519 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13353 923 12390 70547 85315 85315 1 MEELSADEIRR Acetyl (Protein N-term);Oxidation (M) 1405.6507 0.65074314 405 O95155;O95155-2;O95155-4 UBE4B Ubiquitin conjugation factor E4 B yes no 1 0 1 1 By MS/MS By MS/MS 1 0 2 1 1 35.699 35.682 2 5.6111E-15 8234 20211116_3428_TMUAki_TMT10x_P_F1 171.99 159.76 316840 529340 8525.9 686170 808150 653740 440370 450510 486040 327190 549990 295070 494510 41095 688440 766160 663420 467330 464610 494730 324630 528580 2 2 2 2 2 2 2 2 2 2 2 169420 281540 6659.9 391720 672410 521700 322570 278590 317170 203040 315560 157800 263120 27298 393780 636340 517990 345320 293260 322840 201410 304460 1 1 1 1 1 1 1 1 1 1 1 147420 247790 1866.1 294440 135740 132050 117800 171920 168870 124150 234430 137270 231390 13797 294660 129820 145440 122010 171350 171890 123220 224110 1 1 1 1 1 1 1 1 1 1 1 63456000 34816000 28640000 13354 405 12391 70548;70549 85316;85317 85316 305 2 MEETPTEYLQR Oxidation (M) 1411.6289 0.62894506 2241 Q8NE71;Q8NE71-2 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 1 0 By MS/MS By MS/MS 2 0.816 2 2 2 5 1 40.08 40.056 2 3.0554E-08 11751 20211116_3429_TMUAki_TMT10x_P_F2 154.81 112.42 1722300 2622200 9042.7 3868500 4564900 4087300 2257200 2730400 3402400 2062100 2839200 1603600 2451500 171030 3861700 4318300 4119800 2445700 2824600 3391300 2041500 2756300 7 7 2 7 7 7 7 7 7 7 7 1348200 1999800 9042.7 3032600 4330200 3871100 2042300 2015200 2516900 1578500 2174600 1255300 1869900 151760 3033300 4094400 3850200 2205900 2129500 2527600 1559600 2108400 6 6 2 6 6 6 6 6 6 6 6 374110 622400 0 835900 234730 216180 214880 715230 885520 483620 664540 348250 581570 19263 828410 223930 269670 239760 695080 863680 481870 647900 1 1 0 1 1 1 1 1 1 1 1 263340000 208160000 55182000 13355 2241 12392 70550;70551;70552;70553;70554;70555 85318;85319;85320;85321;85322;85323;85324;85325 85320 2639 8 MEETPTEYLQR Unmodified 1395.634 0.63403044 2241 Q8NE71;Q8NE71-2 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 47.646 47.622 2 4.0626E-11 15033 20211116_3430_TMUAki_TMT10x_P_F3 127.94 105.9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13356 2241 12392 70556 85326 85326 1 MEEVVIAGMSGK Acetyl (Protein N-term);2 Oxidation (M) 1323.605 0.6050385 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 1 0 2 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 49.985 49.829 2 0.00012327 15475 20211116_3429_TMUAki_TMT10x_P_F2 43.958 33.085 3435400 5927200 41453 5562400 4429300 6578000 3928400 5108300 5591800 4622900 4766100 3198900 5529300 315490 5715500 4235500 6605600 4062400 5253400 5586600 4535000 4623200 3 3 2 3 3 3 3 3 3 3 3 2495700 4069800 20878 3876500 3535500 5547000 3020600 3363300 3588200 3082900 3151400 2323800 3796900 219050 3993300 3376900 5498800 3108400 3521400 3610100 3022500 3053500 2 2 1 2 2 2 2 2 2 2 2 939690 1857300 20575 1686000 893780 1031000 907810 1745000 2003500 1540000 1614700 875100 1732400 96439 1722300 858600 1106800 954020 1732000 1976500 1512500 1569700 1 1 1 1 1 1 1 1 1 1 1 683330000 495040000 188290000 13357 1092 12393 70557;70558;70559;70560 85327;85328;85329;85330 85327 1429;1430 4 MEEVVIAGMSGK Acetyl (Protein N-term);Oxidation (M) 1307.6101 0.61012387 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 1 0 1 0 By MS/MS By MS/MS 2 0 2 1 1 65.532 65.299 2 0.00023507 20629 20211116_3440_TMUAki_TMT10x_S_F2 50.284 36.289 11908000 21869000 195350 18029000 15401000 14564000 14182000 15392000 12090000 14801000 16445000 11089000 20392000 1218300 18612000 14748000 15069000 14384000 15590000 12545000 14479000 15729000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11908000 21869000 195350 18029000 15401000 14564000 14182000 15392000 12090000 14801000 16445000 11089000 20392000 1218300 18612000 14748000 15069000 14384000 15590000 12545000 14479000 15729000 3 3 3 3 3 3 3 3 3 3 3 224360000 0 224360000 13358 1092 12393 70561;70562 85331;85332;85333;85334 85334 1429;1430 4 MEFPFDVDALFPER Acetyl (Protein N-term);Oxidation (M) 1769.7971 0.79707302 1928 Q5SQI0;Q5SQI0-7;Q5SQI0-6;Q5SQI0-5;Q5SQI0-4;Q5SQI0-3 ATAT1 Alpha-tubulin N-acetyltransferase 1 yes no 1 0 1 0 By MS/MS 2 0 1 1 83.538 83.539 2 0.0011089 29195 20211116_3429_TMUAki_TMT10x_P_F2 68.44 60.401 346980 581680 2975 599890 328010 793460 351820 402000 449400 473130 462290 323100 542840 31274 613600 315290 787590 358640 430610 453370 459160 445550 1 1 1 1 1 1 1 1 1 1 1 346980 581680 2975 599890 328010 793460 351820 402000 449400 473130 462290 323100 542840 31274 613600 315290 787590 358640 430610 453370 459160 445550 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17710000 17710000 0 13359 1928 12394 70563 85335 85335 2519 1 MEGDAVEAIVEESETFIK Acetyl (Protein N-term);Oxidation (M) 2053.9402 0.94016802 1111 P49711 CTCF Transcriptional repressor CTCF yes yes 1 0 1 0 By MS/MS By MS/MS 1.67 0.943 4 2 2 4 83.658 83.648 2;3 4.4743E-59 27757 20211116_3428_TMUAki_TMT10x_P_F1 153.63 138.75 7993100 13506000 8607.2 10260000 8714600 13856000 9329700 11108000 11293000 11569000 11507000 7442100 12590000 432980 10750000 8369300 13832000 9492200 11446000 11410000 11280000 11094000 5 5 2 5 5 5 5 5 5 5 5 4475300 7439200 1898.9 5225900 4043000 9630800 4440400 6671200 6818500 6941500 6504600 4167000 6933300 159530 5553500 3886700 9473000 4556900 6940300 6821400 6768300 6284500 2 2 1 2 2 2 2 2 2 2 2 3517800 6066300 6708.3 5033900 4671600 4225400 4889300 4436800 4474400 4627200 5002900 3275100 5656700 273450 5196300 4482600 4359100 4935200 4506100 4588900 4511300 4809700 3 3 1 3 3 3 3 3 3 3 3 1486500000 1048600000 437850000 13360 1111 12395 70564;70565;70566;70567;70568;70569 85336;85337;85338;85339;85340;85341 85336 1474 6 MEGDAVEAIVEESETFIK Acetyl (Protein N-term) 2037.9453 0.9452534 1111 P49711 CTCF Transcriptional repressor CTCF yes yes 1 0 0 0 By MS/MS 1 0 1 1 85.04 85.04 2 2.1062E-23 28341 20211116_3428_TMUAki_TMT10x_P_F1 114.82 98.563 728870 1189300 0 1024200 701370 1131700 791210 555760 574410 653020 875950 678600 1109100 53133 1058200 674320 1133300 791150 597030 604550 633770 835670 1 1 0 1 1 1 1 1 1 1 1 728870 1189300 0 1024200 701370 1131700 791210 555760 574410 653020 875950 678600 1109100 53133 1058200 674320 1133300 791150 597030 604550 633770 835670 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 44820000 44820000 0 13361 1111 12395 70570 85342 85342 1 MEGHDPKEPEQLR Acetyl (Protein N-term);Oxidation (M) 1622.7359 0.73586975 1169 P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 1 0 1 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 30.072 30.017 3 3.594E-06 7964 20211116_3439_TMUAki_TMT10x_S_F1 76.262 62.004 299150 468570 0 503780 991030 720940 449860 458790 502100 372450 502910 278510 437350 31390 514700 936440 715160 486220 477110 508540 367310 485110 3 3 0 3 3 3 3 3 3 3 3 226680 341660 0 357860 906070 631480 354880 315220 359050 266510 365160 211040 318870 25390 368020 854740 619330 388920 334990 365300 262300 352070 2 2 0 2 2 2 2 2 2 2 2 72462 126900 0 145920 84956 89462 94978 143570 143060 105930 137750 67468 118480 6000 146680 81699 95836 97305 142120 143240 105010 133040 1 1 0 1 1 1 1 1 1 1 1 93096000 73353000 19743000 13362 1169 12396 70571;70572;70573 85343;85344;85345 85345 1557 3 MEGHDPKEPEQLR Acetyl (Protein N-term) 1606.741 0.74095513 1169 P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 1 0 0 1 By MS/MS 2 0 1 1 33.817 33.595 3 6.6265E-06 8934 20211116_3429_TMUAki_TMT10x_P_F2 77.912 68.224 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13363 1169 12396 70574 85346 85346 1 MEGLDDGPDFLSEEDRGLK Acetyl (Protein N-term);Oxidation (M) 2179.9579 0.95794335 3192 Q9UNH7 SNX6 Sorting nexin-6;Sorting nexin-6, N-terminally processed yes yes 1 0 1 1 By MS/MS By MS/MS 1 0 2 1 1 68.149 68.046 3 2.2737E-06 21445 20211116_3428_TMUAki_TMT10x_P_F1 80.596 69.54 6958200 12128000 36534 11143000 9407800 9634100 9121900 7970000 7893300 8018500 8877200 6478900 11313000 620300 11414000 9014000 9870200 9229600 8188800 8118800 7829300 8533000 2 2 1 2 2 2 2 2 2 2 2 1788800 2961400 36534 2926500 1763500 3412100 2127500 1904300 1709900 1885800 2185100 1665800 2763200 182000 2995200 1702300 3412100 2126100 2011700 1774700 1842600 2093200 1 1 1 1 1 1 1 1 1 1 1 5169400 9166300 0 8216100 7644300 6222000 6994300 6065700 6183400 6132600 6692100 4813000 8549600 438300 8419000 7311700 6458100 7103500 6177100 6344100 5986700 6439900 1 1 0 1 1 1 1 1 1 1 1 453130000 233140000 219990000 13364 3192 12397 70575;70576 85347;85348 85347 3182 2 MEGNAEESTLFCFAVR Oxidation (M) 1875.8131 0.81313379 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 1 0 By MS/MS By MS/MS 3 0 3 1 2 68.071 67.668 2;3 1.6708E-30 24331 20211116_3441_TMUAki_TMT10x_S_F3 183 170.5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13365 1471 12398 70577;70578;70579 85349;85350;85351 85350 1981 3 MEGNAEESTLFCFAVR Unmodified 1859.8182 0.81821917 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS 4 0 1 1 74.403 74.292 3 6.8574E-05 24786 20211116_3442_TMUAki_TMT10x_S_F4 82.663 73.409 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13366 1471 12398 70580 85352 85352 1 MEGPLSVFGDR Acetyl (Protein N-term);Oxidation (M) 1264.5758 0.57578728 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 1 0 1 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 71.368 71.174 2 9.0588E-15 24636 20211116_3439_TMUAki_TMT10x_S_F1 152.34 143.48 13254000 21964000 64631 19094000 14885000 22503000 16198000 16622000 15024000 15656000 17722000 12340000 20484000 1032500 19732000 14300000 22582000 16325000 17168000 15432000 15330000 17012000 7 7 3 7 7 7 7 7 7 7 7 7713100 12288000 19856 10848000 8024700 15930000 9767300 9460600 8195300 8751300 10193000 7181100 11460000 571380 11244000 7733500 15770000 9767600 9924200 8477000 8576200 9771300 4 4 1 4 4 4 4 4 4 4 4 5540800 9676100 44775 8246000 6860700 6572900 6430700 7161300 6828900 6904400 7528600 5158900 9023500 461140 8488200 6566500 6812500 6557800 7243800 6954700 6753800 7240900 3 3 2 3 3 3 3 3 3 3 3 4413200000 2210800000 2202400000 13367 712 12399 70581;70582;70583;70584;70585;70586 85353;85354;85355;85356;85357;85358;85359 85357 808 7 MEGQSVEELLAK Acetyl (Protein N-term);Oxidation (M) 1390.665 0.66499622 1763 Q15050 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 1 0 1 0 By MS/MS 1 0 1 1 72.663 72.663 2 7.7643E-06 23271 20211116_3428_TMUAki_TMT10x_P_F1 65.347 46.732 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13368 1763 12400 70587 85360 85360 2375 1 MEGVEEK Acetyl (Protein N-term);Oxidation (M) 878.36915 0.36914855 716 P18124 RPL7 60S ribosomal protein L7 yes yes 1 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 32.527 32.542 2 0.01233 8962 20211116_3439_TMUAki_TMT10x_S_F1 55.676 31.704 795110 1251600 0 1422000 1188500 768320 885860 407210 442990 451600 992550 740240 1168500 60741 1428900 1131300 814920 900680 433580 489550 439230 940470 2 2 0 2 2 2 2 2 2 2 2 369040 562670 0 636920 727020 508250 465440 178660 223510 213860 471610 343570 525310 30278 642600 690180 518300 478300 199340 246780 207420 447270 1 1 0 1 1 1 1 1 1 1 1 426070 688950 0 785120 461490 260070 420420 228550 219480 237740 520940 396670 643220 30464 786310 441120 296620 422370 234240 242770 231810 493200 1 1 0 1 1 1 1 1 1 1 1 17896000 10423000 7472500 13369 716 12401 70588;70589 85361;85362 85362 819 2 MEHFDASLSTYFK Acetyl (Protein N-term);Oxidation (M) 1632.713 0.71300904 3023 Q9NYP7;Q9NYP7-3;Q9NYP7-2 ELOVL5 Elongation of very long chain fatty acids protein 5 yes no 1 0 1 0 By MS/MS 4 0 2 2 68.127 68.209 2 1.5402E-05 21821 20211116_3431_TMUAki_TMT10x_P_F4 78.653 61.712 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13370 3023 12402 70590;70591 85363;85364 85363 3076 2 MEHVQADHELFLQAFEKPTQIYR Unmodified 2829.3908 0.39083405 1755 Q15022 SUZ12 Polycomb protein SUZ12 yes yes 0 0 0 1 By matching By MS/MS 7.5 0.5 1 1 1 1 61.923 62.275 5 0.0054331 18592 20211116_3447_TMUAki_TMT10x_S_F8 53.266 39.25 3046400 5607100 187430 4516800 3796100 3763600 3070700 4855200 4045700 4306000 4311700 2837900 5228000 437740 4673600 3633000 3905100 3182900 4864900 4082600 4228100 4151100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3046400 5607100 187430 4516800 3796100 3763600 3070700 4855200 4045700 4306000 4311700 2837900 5228000 437740 4673600 3633000 3905100 3182900 4864900 4082600 4228100 4151100 1 1 1 1 1 1 1 1 1 1 1 1498300000 843060000 655250000 13371 1755 12403 70592;70593 85365 85365 1 MEIATKDPLNPIK Unmodified 1468.796 0.79595081 1777 Q15181 PPA1 Inorganic pyrophosphatase yes yes 0 0 0 1 By MS/MS 7 0 1 1 57.594 58.328 3 0.082773 18666 20211116_3435_TMUAki_TMT10x_P_F7 36.572 24.012 19650000 33211000 435870 36245000 29717000 35270000 24410000 18445000 17512000 17474000 24555000 18300000 31001000 2176400 36747000 28387000 35613000 24824000 19574000 18367000 17106000 23469000 1 1 1 1 1 1 1 1 1 1 1 19650000 33211000 435870 36245000 29717000 35270000 24410000 18445000 17512000 17474000 24555000 18300000 31001000 2176400 36747000 28387000 35613000 24824000 19574000 18367000 17106000 23469000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 802110000 802110000 0 13372 1777 12404 70594 85366 85366 1 MEKGEHSIVYLKPSYAFGSVGK Oxidation (M) 2442.2253 0.22533185 1497 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 0 0 1 2 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 52.383 52.184 5 7.2122E-12 14885 20211116_3428_TMUAki_TMT10x_P_F1 121.26 100.37 4412800 9573000 51209 6435800 10590000 21065000 9245700 25873000 23329000 18643000 12410000 4109000 8920900 478130 7006000 10122000 20665000 9884700 25847000 22730000 18506000 12309000 3 3 2 3 3 3 3 3 3 3 3 2671000 5676300 51209 3795500 7995100 18003000 7599600 18852000 16989000 13161000 8667200 2487300 5289600 343730 4217300 7659300 17483000 8020000 18954000 16577000 13088000 8618500 2 2 2 2 2 2 2 2 2 2 2 1741900 3896700 0 2640400 2595300 3062500 1646100 7021100 6340600 5482200 3742500 1621700 3631400 134390 2788700 2463200 3182800 1864700 6892700 6152800 5417600 3690700 1 1 0 1 1 1 1 1 1 1 1 3104300000 1923500000 1180700000 13373 1497 12405 70595;70596;70597;70598 85367;85368;85369 85367 2031 3 MEKPPAPPSLPAGPPGVK Unmodified 1768.9546 0.95457672 1806 Q15428 SF3A2 Splicing factor 3A subunit 2 yes yes 0 0 0 1 By MS/MS 1 0 1 1 53.972 53.972 4 1.1976E-05 15695 20211116_3428_TMUAki_TMT10x_P_F1 85.636 73.49 1768300 2951300 92682 3518700 3876400 4438200 2992100 2330100 2040100 1756000 2586400 1647100 2756000 262510 3563400 3700300 4417300 3051800 2458300 2136500 1738700 2478100 1 1 1 1 1 1 1 1 1 1 1 1768300 2951300 92682 3518700 3876400 4438200 2992100 2330100 2040100 1756000 2586400 1647100 2756000 262510 3563400 3700300 4417300 3051800 2458300 2136500 1738700 2478100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 254350000 254350000 0 13374 1806 12406 70599 85370 85370 1 MEKPPAPPSLPAGPPGVK Oxidation (M) 1784.9495 0.94949134 1806 Q15428 SF3A2 Splicing factor 3A subunit 2 yes yes 0 0 1 1 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 48.621 49.004 3;4 3.6089E-08 13273 20211116_3447_TMUAki_TMT10x_S_F8 111.06 84.035 2861900 4938900 50920 5165100 3594600 3817900 2951800 4189300 4146200 3746200 4458100 2664900 4609400 276840 5233200 3432400 3980800 3064700 4227400 4176900 3677000 4290900 2 2 1 2 2 2 2 2 2 2 2 939070 1582400 0 1624000 1772000 2379100 1418900 1250600 1279200 1202600 1315300 874220 1476700 71379 1665100 1689000 2351700 1453400 1327000 1308800 1176500 1267700 1 1 0 1 1 1 1 1 1 1 1 1922800 3356600 50920 3541100 1822600 1438800 1532900 2938800 2867000 2543600 3142800 1790700 3132700 205470 3568100 1743400 1629100 1611300 2900400 2868100 2500500 3023200 1 1 1 1 1 1 1 1 1 1 1 799920000 496170000 303750000 13375 1806 12406 70600;70601;70602 85371;85372 85372 2430 2 MELEAMSR Acetyl (Protein N-term);2 Oxidation (M) 1039.4314 0.43143123 1299 P61165 TMEM258 Transmembrane protein 258 yes yes 1 0 2 0 By MS/MS 1 0 2 2 32.591 32.591 2 0.033395 6763 20211116_3428_TMUAki_TMT10x_P_F1 41.575 41.575 176030 262820 1414.2 293790 333930 302780 186510 180520 195790 160000 218670 163910 245360 18124 297660 316570 305150 197180 189100 199590 157110 210230 1 1 1 1 1 1 1 1 1 1 1 176030 262820 1414.2 293790 333930 302780 186510 180520 195790 160000 218670 163910 245360 18124 297660 316570 305150 197180 189100 199590 157110 210230 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23666000 23666000 0 13376 1299 12407 70603;70604 85373 85373 1753;1754 1 MELENIVANTVLLK Acetyl (Protein N-term) 1627.8855 0.8854941 917 P43250;P34947;P43250-2;P43250-3 GRK6;GRK5 G protein-coupled receptor kinase 6;G protein-coupled receptor kinase 5 yes no 1 0 0 0 By MS/MS By MS/MS 3.25 1.64 2 1 1 1 3 84.605 84.602 2 1.0111E-19 27965 20211116_3445_TMUAki_TMT10x_S_F6 119.16 11.911 442390 707960 8079 703250 407150 603650 479860 323320 335950 376820 504980 411970 660580 43713 716270 392710 614810 478490 344480 354070 365820 481900 2 2 2 2 2 2 2 2 2 2 2 347040 529880 3708.6 523110 272810 493320 335700 235080 250710 270860 390330 323150 494410 31189 533690 263390 498600 334600 253120 263730 263060 372220 1 1 1 1 1 1 1 1 1 1 1 95350 178080 4370.3 180140 134330 110330 144160 88237 85242 105960 114650 88813 166170 12524 182590 129320 116210 143890 91359 90341 102750 109690 1 1 1 1 1 1 1 1 1 1 1 38657000 18274000 20384000 13377 917 12408 70605;70606;70607;70608 85374;85375 85375 2 MELENIVANTVLLK Acetyl (Protein N-term);Oxidation (M) 1643.8804 0.88040872 917 P43250;P34947;P43250-2;P43250-3 GRK6;GRK5 G protein-coupled receptor kinase 6;G protein-coupled receptor kinase 5 yes no 1 0 1 0 By MS/MS By MS/MS 3.8 1.33 1 1 2 1 2 3 83.068 83.065 2 2.0032E-37 30459 20211116_3441_TMUAki_TMT10x_S_F3 180.67 10.202 1822700 2900600 19341 2734100 2041400 2626500 2176900 1914500 2096600 2126400 2425800 1697300 2706000 170980 2799400 1961900 2666400 2198600 1988800 2148100 2068000 2329900 4 4 3 4 4 4 4 4 4 4 4 823340 1298400 9242.9 1175300 687370 1433200 780460 829030 904410 929620 1046400 766680 1211100 74971 1211500 661980 1430600 790620 876400 919700 903780 1005000 1 1 1 1 1 1 1 1 1 1 1 999390 1602200 10098 1558900 1354000 1193300 1396400 1085500 1192200 1196700 1379400 930590 1494900 96011 1587900 1299900 1235800 1407900 1112400 1228400 1164200 1324900 3 3 2 3 3 3 3 3 3 3 3 287310000 60475000 226840000 13378 917 12408 70609;70610;70611;70612;70613 85376;85377;85378;85379;85380 85378 1159 5 MELGELLYNK Acetyl (Protein N-term) 1250.6217 0.62167484 2662 Q9BTE1;Q9BTE1-3;Q9BTE1-2 DCTN5 Dynactin subunit 5 yes no 1 0 0 0 By MS/MS 3 0 1 1 81.476 81.448 2 0.0025639 29832 20211116_3441_TMUAki_TMT10x_S_F3 49.418 29.805 673680 1219500 0 1219500 900240 724430 973250 566410 546880 743170 835970 627230 1138000 54595 1236700 864740 764980 970190 589150 585270 718540 797480 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 673680 1219500 0 1219500 900240 724430 973250 566410 546880 743170 835970 627230 1138000 54595 1236700 864740 764980 970190 589150 585270 718540 797480 1 1 0 1 1 1 1 1 1 1 1 144570000 0 144570000 13379 2662 12409 70614 85381 85381 1 MELHILEHR Acetyl (Protein N-term);Oxidation (M) 1234.6128 0.61284149 21 A6NHX0;Q8WTX7 GATSL2;GATSL3 GATS-like protein 2;GATS-like protein 3 yes no 1 0 1 0 By MS/MS 1 0 1 1 36.149 36.149 3 0.0662 8423 20211116_3428_TMUAki_TMT10x_P_F1 44.309 23.408 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13380 21 12410 70615 85382 85382 13 1 MELITILEK Acetyl (Protein N-term);Oxidation (M) 1146.6206 0.62061221 1739 Q14974 KPNB1 Importin subunit beta-1 yes yes 1 0 1 0 By MS/MS By MS/MS 2.37 1.31 6 6 3 2 2 7 12 67.207 67.18 2 2.1457E-06 28729 20211116_3430_TMUAki_TMT10x_P_F3 117.04 92.113 66898000 108300000 456630 91493000 78457000 113760000 80607000 85121000 86568000 88554000 88019000 62291000 101000000 5970500 94858000 75300000 113870000 81835000 88094000 87859000 86345000 84863000 17 17 11 17 17 17 17 17 17 17 17 33059000 50957000 102180 43352000 28650000 66202000 34618000 41183000 43846000 42728000 43147000 30781000 47520000 2624200 45105000 27618000 65471000 35088000 43181000 44177000 41667000 41644000 4 4 2 4 4 4 4 4 4 4 4 33839000 57348000 354450 48141000 49807000 47554000 45989000 43938000 42722000 45825000 44871000 31510000 53477000 3346300 49754000 47682000 48400000 46747000 44912000 43681000 44678000 43219000 13 13 9 13 13 13 13 13 13 13 13 15097000000 7459700000 7637700000 13381 1739 12411 70616;70617;70618;70619;70620;70621;70622;70623;70624;70625;70626;70627;70628;70629;70630;70631;70632;70633;70634 85383;85384;85385;85386;85387;85388;85389;85390;85391;85392;85393;85394;85395;85396;85397;85398;85399;85400;85401 85385 2343 19 MELITILEK Acetyl (Protein N-term) 1130.6257 0.62569758 1739 Q14974 KPNB1 Importin subunit beta-1 yes yes 1 0 0 0 By MS/MS By MS/MS 3.5 1.71 2 2 2 2 2 2 6 6 84.289 84.287 2 3.1868E-06 28411 20211116_3431_TMUAki_TMT10x_P_F4 114.28 80.203 37093000 56417000 75918 59684000 43926000 32084000 44357000 11200000 9144900 16080000 35758000 34534000 52655000 2829600 60244000 42107000 33919000 43881000 12588000 11789000 15503000 33670000 11 11 2 11 11 11 11 11 11 11 11 15870000 22467000 0 24789000 15167000 16537000 18183000 4363200 3384000 6171200 14931000 14775000 20973000 1045600 25002000 14602000 17082000 17828000 5104800 4500000 5952600 14046000 4 4 0 4 4 4 4 4 4 4 4 21222000 33950000 75918 34895000 28759000 15547000 26174000 6837000 5760900 9908700 20826000 19760000 31683000 1784100 35242000 27505000 16836000 26052000 7482900 7288600 9550800 19624000 7 7 2 7 7 7 7 7 7 7 7 5064800000 3041600000 2023200000 13382 1739 12411 70635;70636;70637;70638;70639;70640;70641;70642;70643;70644;70645;70646 85402;85403;85404;85405;85406;85407;85408;85409;85410;85411;85412;85413;85414 85405 13 MELLMSALSPCLL Oxidation (M) 1492.7339 0.73394418 2966 Q9NVC6 MED17 Mediator of RNA polymerase II transcription subunit 17 yes yes 0 0 1 0 By MS/MS 8 0 1 1 82.705 82.71 2 0.075144 27522 20211116_3436_TMUAki_TMT10x_P_F8 49.444 23.325 431130 667510 0 621240 396340 714240 498790 314890 371100 423500 487140 401370 622690 27958 638430 382130 712910 496630 343570 387230 409140 466330 1 1 0 1 1 1 1 1 1 1 1 431130 667510 0 621240 396340 714240 498790 314890 371100 423500 487140 401370 622690 27958 638430 382130 712910 496630 343570 387230 409140 466330 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42988000 42988000 0 13383 2966 12412 70647 85415 85415 3050 1 MELQEIQLK Unmodified 1130.6005 0.60054547 526;527;525 P06753-2;P06753-3;P06753-5;P06753-4;P06753-7;P06753-6;P06753 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 0 By MS/MS 6 0 1 1 62.2 62.192 2 0.00029599 18840 20211116_3445_TMUAki_TMT10x_S_F6 94.309 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13384 526;527;525 12413 70648 85416 85416 1 MELSAEYLR Acetyl (Protein N-term);Oxidation (M) 1168.5434 0.54342452 2798 Q9H3K6;Q9H3K6-2 BOLA2 BolA-like protein 2 yes no 1 0 1 0 By MS/MS By MS/MS 1.33 0.471 4 2 3 3 55.585 55.423 1;2 5.8362E-05 17809 20211116_3429_TMUAki_TMT10x_P_F2 94.114 77.338 12484000 22551000 460480 23856000 14845000 17376000 14392000 17854000 16191000 16563000 18629000 11627000 21048000 1494200 24148000 14251000 18112000 14678000 18090000 16479000 16229000 17895000 5 5 4 5 5 5 5 5 5 5 5 2595800 4538500 68759 5055000 5140300 6929300 3863100 3876600 3714300 3699300 3737600 2417400 4236800 311880 5148500 4900600 6874900 3980700 4090200 3786000 3620300 3604800 2 2 1 2 2 2 2 2 2 2 2 9888400 18013000 391720 18801000 9704900 10446000 10529000 13978000 12477000 12864000 14892000 9210000 16811000 1182300 18999000 9350000 11237000 10697000 14000000 12693000 12609000 14291000 3 3 3 3 3 3 3 3 3 3 3 1723200000 951780000 771380000 13385 2798 12414 70649;70650;70651;70652;70653;70654 85417;85418;85419;85420;85421;85422 85419 2956 6 MELSAEYLR Acetyl (Protein N-term) 1152.5485 0.5485099 2798 Q9H3K6;Q9H3K6-2 BOLA2 BolA-like protein 2 yes no 1 0 0 0 By MS/MS 1.5 0.5 1 1 2 70.741 70.579 2 0.00015613 24423 20211116_3439_TMUAki_TMT10x_S_F1 87.181 55.247 1181400 1933300 71445 2153300 1531900 1482700 1516300 1404000 1268600 1473800 1612600 1100500 1804800 169440 2171100 1472800 1550100 1531200 1433600 1313600 1436500 1545000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1181400 1933300 71445 2153300 1531900 1482700 1516300 1404000 1268600 1473800 1612600 1100500 1804800 169440 2171100 1472800 1550100 1531200 1433600 1313600 1436500 1545000 1 1 1 1 1 1 1 1 1 1 1 144650000 0 144650000 13386 2798 12414 70655;70656 85423;85424 85423 2 MELSDANLQTLTEYLK Acetyl (Protein N-term);Oxidation (M) 1925.9292 0.92920941 1234 P55060;P55060-3;P55060-4;P55060-2 CSE1L Exportin-2 yes no 1 0 1 0 By MS/MS By MS/MS 3.05 1.5 4 4 4 4 3 1 9 11 81.41 81.397 2;3 1.9384E-69 29790 20211116_3441_TMUAki_TMT10x_S_F3 220.25 184.31 56665000 93685000 394630 87950000 56987000 76098000 65108000 46343000 57307000 57135000 66873000 52760000 87396000 4523100 89951000 54835000 77586000 65375000 48944000 58981000 55357000 64214000 21 21 8 21 21 21 21 21 21 21 21 26539000 42198000 213570 40331000 22560000 43228000 26191000 21291000 26406000 27228000 30571000 24709000 39368000 1968000 41320000 21712000 43366000 26384000 22932000 27002000 26348000 29362000 10 10 4 10 10 10 10 10 10 10 10 30127000 51487000 181060 47618000 34427000 32870000 38916000 25053000 30902000 29907000 36301000 28051000 48028000 2555100 48631000 33123000 34220000 38992000 26012000 31979000 29009000 34851000 11 11 4 11 11 11 11 11 11 11 11 15003000000 8484100000 6519100000 13387 1234 12415 70657;70658;70659;70660;70661;70662;70663;70664;70665;70666;70667;70668;70669;70670;70671;70672;70673;70674;70675;70676 85425;85426;85427;85428;85429;85430;85431;85432;85433;85434;85435;85436;85437;85438;85439;85440;85441;85442;85443;85444;85445 85440 1664 21 MELSDANLQTLTEYLK Acetyl (Protein N-term) 1909.9343 0.93429479 1234 P55060;P55060-3;P55060-4;P55060-2 CSE1L Exportin-2 yes no 1 0 0 0 By MS/MS By MS/MS 3.74 1.55 1 4 4 4 2 4 9 10 82.99 82.983 2;3 2.878E-69 28949 20211116_3429_TMUAki_TMT10x_P_F2 206.11 189.48 33074000 49725000 13808 58569000 30652000 26528000 34230000 9604300 9067000 12768000 30642000 30793000 46432000 2432800 58646000 29463000 28621000 33755000 10714000 11091000 12340000 28891000 17 16 1 16 16 16 16 16 16 16 16 19155000 28013000 0 33401000 16717000 17811000 18619000 5388100 5284200 7606100 17575000 17833000 26159000 1369500 33461000 16065000 18827000 18374000 6171600 6395400 7337100 16573000 8 8 0 8 8 8 8 8 8 8 8 13919000 21712000 13808 25168000 13935000 8716600 15611000 4216200 3782900 5161800 13067000 12959000 20272000 1063300 25185000 13398000 9793500 15381000 4542200 4695500 5002400 12318000 9 8 1 8 8 8 8 8 8 8 8 5344800000 3221300000 2123400000 13388 1234 12415 70677;70678;70679;70680;70681;70682;70683;70684;70685;70686;70687;70688;70689;70690;70691;70692;70693;70694;70695 85446;85447;85448;85449;85450;85451;85452;85453;85454;85455;85456;85457;85458;85459;85460;85461;85462 85447 17 MELSDANLQTLTEYLKK Acetyl (Protein N-term);Oxidation (M) 2054.0242 0.024172425 1234 P55060;P55060-3;P55060-4;P55060-2 CSE1L Exportin-2 yes no 1 0 1 1 By MS/MS By MS/MS 5.95 1.53 1 4 3 4 5 4 15 6 76.218 76.228 2;3 8.1236E-22 25490 20211116_3444_TMUAki_TMT10x_S_F5 145.69 134.43 103680000 173490000 238830 147230000 126480000 187650000 132660000 148360000 142790000 149460000 141570000 96532000 161790000 8053400 152660000 121370000 187790000 134550000 152860000 144780000 145930000 136610000 20 20 6 20 20 20 20 20 20 20 20 61720000 100860000 55810 89866000 60616000 125560000 71960000 77283000 74783000 78785000 77781000 57460000 94070000 4273300 92988000 58352000 124620000 72486000 81057000 76062000 76884000 74939000 12 12 2 12 12 12 12 12 12 12 12 41964000 72635000 183020 57364000 65864000 62096000 60701000 71080000 68011000 70676000 63794000 39072000 67719000 3780200 59670000 63022000 63170000 62068000 71804000 68720000 69043000 61671000 8 8 4 8 8 8 8 8 8 8 8 32060000000 17955000000 14105000000 13389 1234 12416 70696;70697;70698;70699;70700;70701;70702;70703;70704;70705;70706;70707;70708;70709;70710;70711;70712;70713;70714;70715;70716 85463;85464;85465;85466;85467;85468;85469;85470;85471;85472;85473;85474;85475;85476;85477;85478;85479;85480;85481;85482;85483;85484;85485 85480 1664 23 MELSDANLQTLTEYLKK Acetyl (Protein N-term) 2038.0293 0.029257803 1234 P55060;P55060-3;P55060-4;P55060-2 CSE1L Exportin-2 yes no 1 0 0 1 By MS/MS By MS/MS 6.86 0.833 3 2 2 3 4 80.556 80.562 2;3 1.0259E-28 25947 20211116_3434_TMUAki_TMT10x_P_F6 145.69 127.78 17166000 28875000 124020 27265000 21012000 21681000 23141000 8172200 7018000 10192000 18854000 15983000 26937000 1544500 27845000 20205000 22128000 22863000 9051100 8265100 9870600 17821000 6 6 2 6 6 6 6 6 6 6 6 10635000 17019000 0 16472000 10813000 15351000 13757000 4650200 4120700 5874300 10786000 9901700 15879000 844430 16826000 10439000 15467000 13502000 5304700 4850300 5686700 10199000 3 3 0 3 3 3 3 3 3 3 3 6530800 11855000 124020 10794000 10199000 6330200 9384700 3521900 2897300 4317400 8067400 6081700 11058000 700080 11020000 9765400 6661000 9361000 3746400 3414900 4183800 7622200 3 3 2 3 3 3 3 3 3 3 3 6437200000 2830100000 3607100000 13390 1234 12416 70717;70718;70719;70720;70721;70722;70723 85486;85487;85488;85489;85490;85491;85492 85486 7 MEMIKHARK Unmodified 1142.6053 0.60525369 3385 yes no 0 0 0 2 By MS/MS By MS/MS 2.29 2.37 4 2 1 2 5 40.672 40.679 4 0.0095902 10205 20211116_3428_TMUAki_TMT10x_P_F1 66.692 30.408 + 24179000 29252000 303390 31714000 22693000 18345000 17944000 13380000 12716000 12782000 31538000 22515000 27304000 2266500 31979000 21658000 19402000 18288000 13836000 13833000 12508000 29840000 7 7 7 7 7 7 7 7 7 7 7 13180000 11935000 215870 14216000 16368000 10990000 8370800 5373800 5005400 5084100 18640000 12274000 11145000 1338600 14293000 15506000 11269000 8804800 5738500 5723200 4977300 17559000 2 2 2 2 2 2 2 2 2 2 2 10999000 17317000 87516 17498000 6325200 7354800 9572900 8006100 7710600 7698100 12898000 10241000 16159000 927960 17686000 6151900 8132900 9482700 8097900 8109800 7531100 12282000 5 5 5 5 5 5 5 5 5 5 5 1737900000 671630000 1066200000 13391 3385 12417 70724;70725;70726;70727;70728;70729;70730 85493;85494;85495;85496 85493 4 MENQVLTPHVYWAQR Acetyl (Protein N-term) 1912.9254 0.92540185 3047 Q9P035;Q9P035-2 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes no 1 0 0 0 By MS/MS 4 0 1 1 63.987 64.093 2 0.016841 20153 20211116_3431_TMUAki_TMT10x_P_F4 46.955 32.748 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13392 3047 12418 70731 85497 85497 1 MENSQLCK Acetyl (Protein N-term);Oxidation (M) 1066.4423 0.44233027 1601 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 1 0 1 0 By MS/MS 2 0 1 1 32.128 32.179 2 0.010012 7097 20211116_3440_TMUAki_TMT10x_S_F2 56.547 51.388 97953 221220 0 169920 131010 97015 123260 103530 91849 96721 142460 91204 206230 4701.1 175880 125430 103480 124460 104730 96611 94743 135860 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 97953 221220 0 169920 131010 97015 123260 103530 91849 96721 142460 91204 206230 4701.1 175880 125430 103480 124460 104730 96611 94743 135860 2 2 0 2 2 2 2 2 2 2 2 1331300 0 1331300 13393 1601 12419 70732 85498;85499 85499 2153 2 MEPAVSEPMRDQVAR Acetyl (Protein N-term);2 Oxidation (M) 1788.8135 0.81346814 1826 Q15738 NSDHL Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating yes yes 1 0 2 1 By MS/MS By MS/MS 1 0 2 1 1 31.091 31.116 2 0.00012491 8391 20211116_3439_TMUAki_TMT10x_S_F1 62.271 44.111 31781 56576 419.3 98717 54047 50712 23018 39632 45832 32822 49681 29594 52949 1627.2 97014 51068 54374 25677 40651 45764 32336 47806 3 3 1 3 3 3 3 3 3 3 3 20439 26944 419.3 49235 47025 42057 17555 21080 24663 20236 30967 19034 25225 1627.2 48546 44374 42816 19568 22466 25003 19798 29678 2 2 1 2 2 2 2 2 2 2 2 11341 29632 0 49482 7021.7 8654.6 5462.8 18552 21168 12586 18714 10560 27724 0 48467 6693.5 11557 6108.8 18185 20761 12538 18129 1 1 0 1 1 1 1 1 1 1 1 86991000 52552000 34439000 13394 1826 12420 70733;70734 85500;85501;85502 85502 2445;2446 3 MEPGPDGPAASGPAAIR Acetyl (Protein N-term);Oxidation (M) 1650.7672 0.76716988 735 P19623 SRM Spermidine synthase yes yes 1 0 1 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 41.919 41.818 2 2.1537E-47 12245 20211116_3429_TMUAki_TMT10x_P_F2 256.63 238.77 977110 1564300 6509.8 2036100 1999200 2158500 1166200 1685700 1858100 1373100 1702900 909700 1461400 85216 2045700 1895300 2180700 1247900 1728400 1854500 1354000 1647500 4 4 1 4 4 4 4 4 4 4 4 608670 908500 0 1179400 1714000 1885100 979910 1039300 1155400 890170 1031900 566650 848740 54565 1194600 1624300 1857900 1037800 1094900 1163300 875530 999240 2 2 0 2 2 2 2 2 2 2 2 368430 655780 6509.8 856700 285160 273360 186260 646400 702730 482970 671010 343060 612660 30651 851060 271020 322840 210090 633500 691180 478430 648280 2 2 1 2 2 2 2 2 2 2 2 378000000 262630000 115370000 13395 735 12421 70735;70736;70737;70738 85503;85504;85505;85506 85504 843 4 MEPPGGSLGPGR Acetyl (Protein N-term);Oxidation (M) 1211.5605 0.56047157 279 O60610;O60610-2;O60610-3 DIAPH1 Protein diaphanous homolog 1 yes no 1 0 1 0 By MS/MS 2 0 1 1 33.801 33.882 2 4.036E-05 7751 20211116_3440_TMUAki_TMT10x_S_F2 85.744 79.38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13396 279 12422 70739 85507 85507 217 1 MEPSPFGDVSSR Oxidation (M) 1323.5765 0.57651556 1908 Q53H80 AKIRIN2 Akirin-2 yes yes 0 0 1 0 By MS/MS 3 0 1 1 40.442 40.497 2 0.035048 12046 20211116_3430_TMUAki_TMT10x_P_F3 59.013 50.15 146070 202150 1854.1 250970 292570 299690 171440 157670 173830 151160 194280 136020 188810 15890 253310 277600 299110 180310 167280 177460 147900 186790 1 1 1 1 1 1 1 1 1 1 1 146070 202150 1854.1 250970 292570 299690 171440 157670 173830 151160 194280 136020 188810 15890 253310 277600 299110 180310 167280 177460 147900 186790 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12162000 12162000 0 13397 1908 12423 70740 85508 85508 2504 1 MEQVNELK Acetyl (Protein N-term);Oxidation (M) 1047.4907 0.49066067 897 P31948;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 1 0 1 0 By MS/MS 2 0.816 1 1 1 3 42.536 42.458 2 0.00015022 12576 20211116_3429_TMUAki_TMT10x_P_F2 114.78 99.918 7230100 10379000 0 13981000 20675000 17094000 10299000 8919700 9285000 7803200 10478000 6731200 9698600 703680 14055000 19558000 17038000 10958000 9448000 9532600 7667000 10071000 6 6 0 6 6 6 6 6 6 6 6 7230100 10379000 0 13981000 20675000 17094000 10299000 8919700 9285000 7803200 10478000 6731200 9698600 703680 14055000 19558000 17038000 10958000 9448000 9532600 7667000 10071000 6 6 0 6 6 6 6 6 6 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 561860000 561860000 0 13398 897 12424 70741;70742;70743 85509;85510;85511;85512;85513;85514 85513 1109 6 MEQVNELK Acetyl (Protein N-term) 1031.4957 0.49574604 897 P31948;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 1 0 0 0 By MS/MS By matching 3 0 2 1 1 56.295 55.99 2 0.014422 18483 20211116_3430_TMUAki_TMT10x_P_F3 61.999 47.482 5836500 8731800 46510 10139000 10516000 12363000 7650100 6479000 6180500 5985800 7447400 5434500 8153000 566010 10277000 10012000 12325000 7864200 6869600 6396800 5866400 7145000 2 2 1 2 2 2 2 2 2 2 2 5836500 8731800 46510 10139000 10516000 12363000 7650100 6479000 6180500 5985800 7447400 5434500 8153000 566010 10277000 10012000 12325000 7864200 6869600 6396800 5866400 7145000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 322130000 184350000 137780000 13399 897 12424 70744;70745 85515;85516 85516 2 MESAGLEQLLR Acetyl (Protein N-term);Oxidation (M) 1303.6442 0.6442012 2289 Q8TEX9;Q8TEX9-2 IPO4 Importin-4 yes no 1 0 1 0 By MS/MS 2 0 1 1 70.656 70.494 2 0.0024343 22670 20211116_3440_TMUAki_TMT10x_S_F2 60.398 36.443 2702200 4633400 172700 4298100 3091600 3100700 3288100 2787200 2488400 2893300 3074600 2517300 4322200 390440 4390500 2979800 3225600 3300300 2852800 2587300 2821400 2947800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2702200 4633400 172700 4298100 3091600 3100700 3288100 2787200 2488400 2893300 3074600 2517300 4322200 390440 4390500 2979800 3225600 3300300 2852800 2587300 2821400 2947800 1 1 1 1 1 1 1 1 1 1 1 241090000 0 241090000 13400 2289 12425 70746 85517 85517 2657 1 MESAIAEGGASR Acetyl (Protein N-term);Oxidation (M) 1235.5452 0.54521543 1426 P78344;P78344-2 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 1 0 1 0 By MS/MS By matching 1 0 2 1 1 32.072 32.087 2 5.2236E-09 6814 20211116_3428_TMUAki_TMT10x_P_F1 99.34 92.976 158100 197550 77.206 256140 293740 225950 166870 124520 133120 104120 184100 147210 184560 15079 256720 278460 229770 174850 131110 138710 102530 176020 1 1 1 1 1 1 1 1 1 1 1 158100 197550 77.206 256140 293740 225950 166870 124520 133120 104120 184100 147210 184560 15079 256720 278460 229770 174850 131110 138710 102530 176020 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27922000 17902000 10020000 13401 1426 12426 70747;70748 85518 85518 1918 1 MESDFYLR Acetyl (Protein N-term);Oxidation (M) 1117.475 0.4750106 1309 P61326;P61326-2 MAGOH Protein mago nashi homolog yes no 1 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 54.758 54.61 2 0.0002616 15907 20211116_3428_TMUAki_TMT10x_P_F1 124.37 105.64 4806300 7969100 93697 8210700 6769500 8273500 5697100 5260300 5335700 4927200 6416800 4475900 7436900 513290 8360100 6469600 8356900 5823700 5490400 5482300 4825900 6156600 3 3 3 3 3 3 3 3 3 3 3 3414100 5590700 60477 5636100 5442800 7036900 4530400 3641700 3758400 3512500 4476400 3179300 5216900 367830 5767500 5199600 7006000 4619200 3870100 3882800 3435800 4296000 2 2 2 2 2 2 2 2 2 2 2 1392300 2378400 33220 2574600 1326600 1236700 1166700 1618600 1577300 1414700 1940400 1296600 2220000 145470 2592600 1270000 1350900 1204500 1620300 1599500 1390100 1860600 1 1 1 1 1 1 1 1 1 1 1 765460000 416970000 348490000 13402 1309 12427 70749;70750 85519;85520;85521 85519 1767 3 MESRDPAQPMSPGEATQSGARPADR Acetyl (Protein N-term);Oxidation (M) 2699.2028 0.20277528 2629 Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 1 0 1 2 By MS/MS 2 0 1 1 30.461 30.231 3 7.5867E-17 7650 20211116_3429_TMUAki_TMT10x_P_F2 101.33 97.075 17888 28969 0 35016 47488 45476 20254 15653 21352 13622 27848 16656 27054 0 35452 44849 45012 22002 17359 21904 13387 26663 1 1 0 1 1 1 1 1 1 1 1 17888 28969 0 35016 47488 45476 20254 15653 21352 13622 27848 16656 27054 0 35452 44849 45012 22002 17359 21904 13387 26663 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10110000 10110000 0 13403 2629 12428 70751 85522 85522 2872;2874 1 METASELGREEEDDVDLELR Oxidation (M) 2351.0435 0.043463897 2871 Q9HCS7 XAB2 Pre-mRNA-splicing factor SYF1 yes yes 0 0 1 1 By MS/MS By MS/MS 1 0 2 1 1 52.669 52.524 3 8.4029E-13 15056 20211116_3428_TMUAki_TMT10x_P_F1 130.05 111.22 10384000 17406000 19081 17576000 14331000 23576000 13303000 19522000 18851000 16378000 16355000 9667500 16243000 789640 18008000 13707000 23556000 13719000 19959000 18846000 16126000 15855000 6 6 2 6 6 6 6 6 6 6 6 8102800 13173000 16279 13362000 11917000 21142000 11483000 14758000 14341000 12633000 12598000 7543500 12293000 599480 13735000 11407000 20915000 11759000 15264000 14403000 12425000 12207000 4 4 1 4 4 4 4 4 4 4 4 2281100 4233000 2802.8 4213600 2414300 2434200 1819200 4763800 4509600 3745900 3757600 2123900 3949800 190170 4273400 2300000 2641900 1959700 4695500 4443400 3700400 3648100 2 2 1 2 2 2 2 2 2 2 2 1357700000 884530000 473210000 13404 2871 12430 70752;70753 85523;85524;85525;85526;85527;85528 85523 2995 6 METASELGREEEDDVDLELR Unmodified 2335.0485 0.048549275 2871 Q9HCS7 XAB2 Pre-mRNA-splicing factor SYF1 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 59.674 59.527 3 2.1147E-41 17923 20211116_3428_TMUAki_TMT10x_P_F1 204.31 188.08 5725300 9285000 57030 9528800 7010700 8699900 6941700 5335600 5395600 5841700 7208400 5331100 8664800 516820 9691300 6722000 8838400 6997100 5609800 5621100 5684500 6897600 2 2 1 2 2 2 2 2 2 2 2 3003600 4847700 0 4788700 3705300 6040500 4035500 2888700 2772800 3000700 3605200 2796400 4523200 229850 4908100 3559200 6005700 4037000 3099400 2905600 2926000 3452100 1 1 0 1 1 1 1 1 1 1 1 2721700 4437200 57030 4740100 3305400 2659300 2906300 2446900 2622800 2841100 3603200 2534600 4141500 286970 4783200 3162800 2832700 2960000 2510300 2715500 2758500 3445500 1 1 1 1 1 1 1 1 1 1 1 509040000 263000000 246040000 13405 2871 12430 70754;70755 85529;85530 85529 2 METDAPQPGLASPDSPHDPCK Acetyl (Protein N-term);Oxidation (M) 2306.9784 0.97836122 210 O43347 MSI1 RNA-binding protein Musashi homolog 1 yes yes 1 0 1 0 By MS/MS 1 0 1 1 41.404 41.242 3 1.6107E-05 12498 20211116_3439_TMUAki_TMT10x_S_F1 61.181 56.076 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13406 210 12431 70756 85531 85531 165 1 METEQPEETFPNTETNGEFGK Acetyl (Protein N-term);Oxidation (M) 2472.0275 0.027479482 1329;1330 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 1 0 1 0 By MS/MS By MS/MS 1.6 0.49 2 3 3 2 62.24 62.042 3 1.1315E-19 20950 20211116_3439_TMUAki_TMT10x_S_F1 145.62 136.83 15717000 27911000 157870 28597000 15785000 23575000 16099000 25367000 26066000 23404000 24115000 14634000 26047000 1340900 29050000 15146000 24366000 16622000 25642000 26012000 22938000 23323000 9 9 5 9 9 9 9 9 9 9 9 4861900 8257700 81001 8597400 6695800 13189000 7823000 8209300 8249000 7096200 7561200 4527300 7706600 469830 8815400 6451200 13041000 7889500 8564600 8348900 6976400 7315300 3 3 2 3 3 3 3 3 3 3 3 10855000 19654000 76864 19999000 9089200 10386000 8276300 17157000 17817000 16308000 16553000 10107000 18340000 871090 20234000 8694500 11325000 8732900 17077000 17663000 15962000 16008000 6 6 3 6 6 6 6 6 6 6 6 4835600000 2770800000 2064900000 13407 1329;1330 12432 70757;70758;70759;70760;70761 85532;85533;85534;85535;85536;85537;85538;85539;85540;85541 85538 1784 10 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFK Acetyl (Protein N-term);Oxidation (M) 4032.7153 0.71533641 1329;1330 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 1 0 1 2 By MS/MS By MS/MS 2 1 1 1 1 1 61.216 61.003 4 2.5144E-17 21638 20211116_3441_TMUAki_TMT10x_S_F3 120.91 116.08 5970400 9072900 21449 10095000 5532100 5679900 6395400 1248800 1378100 2061200 5296800 5558500 8469800 416220 10160000 5321400 5959100 6286700 1517700 1760600 1979600 4988300 2 2 1 2 2 2 2 2 2 2 2 4828100 7107900 0 8045500 4436400 5063300 5405300 969790 1103200 1573600 4205800 4494700 6636000 302170 8096900 4272200 5250100 5299000 1210700 1420700 1512000 3961100 1 1 0 1 1 1 1 1 1 1 1 1142300 1965000 21449 2049600 1095700 616660 990160 279030 274840 487590 1091000 1063800 1833900 114040 2063500 1049200 709010 987730 306980 339860 467610 1027200 1 1 1 1 1 1 1 1 1 1 1 1841700000 1572300000 269470000 13408 1329;1330 12433 70762;70763 85542;85543 85543 1784;1785 2 METFDPTELPELLK Acetyl (Protein N-term);Oxidation (M) 1719.8277 0.82770445 1108 P49642 PRIM1 DNA primase small subunit yes yes 1 0 1 0 By MS/MS By MS/MS 1.78 0.786 4 3 2 5 4 81.696 81.679 2;3 1.1459E-10 29911 20211116_3441_TMUAki_TMT10x_S_F3 117.67 100.73 10649000 16936000 64323 16180000 11744000 17666000 12164000 10414000 10699000 11204000 13201000 9913600 15800000 735750 16581000 11260000 17742000 12271000 10978000 11038000 10910000 12657000 6 6 2 6 6 6 6 6 6 6 6 7363300 11220000 7819.6 10651000 6946100 13323000 7649600 6917900 7111100 7698100 8558100 6854500 10467000 415160 10946000 6665600 13263000 7705900 7380200 7309300 7486300 8210900 4 4 1 4 4 4 4 4 4 4 4 3285300 5715700 56503 5528400 4797400 4343300 4514700 3496100 3588200 3505800 4642400 3059100 5332600 320600 5635400 4594600 4478800 4565500 3597600 3728400 3423500 4445700 2 2 1 2 2 2 2 2 2 2 2 2611500000 2057600000 553880000 13409 1108 12434 70764;70765;70766;70767;70768;70769;70770;70771;70772 85544;85545;85546;85547;85548;85549;85550;85551;85552 85552 1473 9 METFDPTELPELLK Acetyl (Protein N-term) 1703.8328 0.83278983 1108 P49642 PRIM1 DNA primase small subunit yes yes 1 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 83.363 83.35 2 1.0263E-20 30568 20211116_3441_TMUAki_TMT10x_S_F3 168.79 151.85 9045400 14275000 79846 15376000 9339900 10372000 10570000 5176000 4401000 6034200 10284000 8422300 13324000 774320 15533000 8987800 10758000 10466000 5550500 4956000 5858000 9738900 8 8 6 8 8 8 8 8 8 8 8 5384300 8140400 35887 9036600 5042500 7194600 5787500 3273000 2787300 3874200 5906100 5013200 7599200 420910 9128000 4852400 7354900 5738700 3543700 3077500 3758900 5600900 5 5 3 5 5 5 5 5 5 5 5 3661000 6134200 43959 6338900 4297400 3177000 4782400 1903000 1613700 2160000 4378300 3409100 5724600 353410 6405000 4135400 3402900 4727500 2006800 1878400 2099000 4138000 3 3 3 3 3 3 3 3 3 3 3 445780000 269920000 175860000 13410 1108 12434 70773;70774;70775;70776;70777;70778 85553;85554;85555;85556;85557;85558;85559;85560 85559 8 METILEQQR Acetyl (Protein N-term);Oxidation (M) 1204.5758 0.57578728 1572 Q12874 SF3A3 Splicing factor 3A subunit 3 yes yes 1 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 41.55 41.388 2 4.9915E-05 10558 20211116_3428_TMUAki_TMT10x_P_F1 77.072 58.693 2077000 3669600 55702 3987900 3211000 2561700 2714700 3072100 2616300 2514100 3150100 1934300 3425300 240000 4024500 3069800 2709100 2776600 3081100 2684900 2478400 3022200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2077000 3669600 55702 3987900 3211000 2561700 2714700 3072100 2616300 2514100 3150100 1934300 3425300 240000 4024500 3069800 2709100 2776600 3081100 2684900 2478400 3022200 1 1 1 1 1 1 1 1 1 1 1 66526000 0 66526000 13411 1572 12435 70779;70780 85561;85562 85561 2118 2 METILEQQRR Acetyl (Protein N-term);Oxidation (M) 1360.6769 0.67689831 1572 Q12874 SF3A3 Splicing factor 3A subunit 3 yes yes 1 0 1 1 By MS/MS By MS/MS 2 0.894 2 1 2 3 2 33.378 33.318 2 5.0172E-05 10317 20211116_3441_TMUAki_TMT10x_S_F3 83.005 71.158 875080 1520700 6156.2 1718600 1974800 1689900 1388600 800190 991840 777960 1314800 814790 1419700 87970 1738800 1878800 1703300 1426900 857810 1037900 760710 1258400 5 5 2 5 5 5 5 5 5 5 5 671600 1192600 1509.4 1374800 1807500 1523800 1161000 663190 822560 619020 1050500 625290 1113500 67276 1391900 1716600 1523800 1200900 716400 859710 606390 1006300 4 4 1 4 4 4 4 4 4 4 4 203480 328090 4646.7 343790 167290 166070 227610 137000 169280 158940 264290 189500 306200 20694 346960 162200 179490 225920 141410 178140 154320 252010 1 1 1 1 1 1 1 1 1 1 1 223330000 162090000 61235000 13412 1572 12436 70781;70782;70783;70784;70785 85563;85564;85565;85566;85567;85568 85568 2118 6 METILEQQRR Acetyl (Protein N-term) 1344.682 0.68198369 1572 Q12874 SF3A3 Splicing factor 3A subunit 3 yes yes 1 0 0 1 By MS/MS By MS/MS 3 0 2 1 1 49.036 48.684 2 2.38E-05 16619 20211116_3441_TMUAki_TMT10x_S_F3 95.099 82.51 1739800 2572100 33290 2957900 1669500 1390200 1727100 2091100 1822300 1814100 2479400 1620100 2401500 174280 2966900 1604300 1528700 1751800 2082400 1873000 1783200 2371500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1739800 2572100 33290 2957900 1669500 1390200 1727100 2091100 1822300 1814100 2479400 1620100 2401500 174280 2966900 1604300 1528700 1751800 2082400 1873000 1783200 2371500 1 1 1 1 1 1 1 1 1 1 1 157660000 0 157660000 13413 1572 12436 70786;70787 85569;85570 85570 2 MEVAANCSLR Acetyl (Protein N-term);Oxidation (M) 1207.5325 0.53254226 2545 Q96RS6 NUDCD1 NudC domain-containing protein 1 yes yes 1 0 1 0 By MS/MS 2 0 1 1 33.267 33.349 2 0.0017941 7456 20211116_3440_TMUAki_TMT10x_S_F2 57.55 51.185 53379 83416 0 88688 58307 45895 57290 48396 43064 50249 75504 49701 77856 0 89464 55882 49451 57724 49135 45584 48999 71831 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 53379 83416 0 88688 58307 45895 57290 48396 43064 50249 75504 49701 77856 0 89464 55882 49451 57724 49135 45584 48999 71831 1 1 0 1 1 1 1 1 1 1 1 1744400 0 1744400 13414 2545 12437 70788 85571 85571 2794 1 MEVAEPSSPTEEEEEEEEHSAEPRPR Acetyl (Protein N-term);Oxidation (M) 3067.2836 0.28364718 2991 Q9NWV8;Q9NWV8-3 BABAM1 BRISC and BRCA1-A complex member 1 yes no 1 0 1 1 By MS/MS By MS/MS 1 0 2 1 1 35.304 35.287 3;4 1.0431E-98 10038 20211116_3439_TMUAki_TMT10x_S_F1 270.54 262.64 41618 73910 480.15 124160 235490 123300 86550 52487 91694 33633 99687 38754 69154 6613.2 123100 222090 122510 95738 56374 93341 33624 95917 1 2 1 2 1 1 1 1 1 1 1 41618 61447 480.15 98875 235490 123300 86550 52487 91694 33633 99687 38754 57477 6613.2 98591 222090 122510 95738 56374 93341 33624 95917 1 1 1 1 1 1 1 1 1 1 1 0 12463 0 25286 0 0 0 0 0 0 0 0 11677 0 24512 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 275570000 47474000 228090000 13415 2991 12438 70789;70790 85572;85573;85574 85573 3064 3 MEVAEPSSPTEEEEEEEEHSAEPRPR Acetyl (Protein N-term) 3051.2887 0.28873256 2991 Q9NWV8;Q9NWV8-3 BABAM1 BRISC and BRCA1-A complex member 1 yes no 1 0 0 1 By MS/MS 1 0 1 1 41.367 41.367 3 4.1289E-103 10511 20211116_3428_TMUAki_TMT10x_P_F1 251.3 244.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13416 2991 12438 70791 85575 85575 1 MEVDYSATVDQR Oxidation (M) 1428.6191 0.61910866 74 O00232;O00232-2 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes no 0 0 1 0 By MS/MS By MS/MS 2.19 0.852 4 11 4 2 6 15 33.835 33.803 2;3 3.2511E-16 11335 20211116_3441_TMUAki_TMT10x_S_F3 203.78 181.09 3269500 5173500 39186 5642800 4336500 3927500 3496200 3507200 3911500 3169600 4388600 3044200 4829200 290350 5697800 4137300 4097400 3603100 3577000 3978000 3109500 4218700 15 15 9 15 15 15 15 15 15 15 15 1151200 1632100 13942 1866700 2161700 2092800 1293300 1036500 1276700 1017000 1404200 1071800 1523800 99928 1891200 2050300 2094300 1356700 1106600 1304100 994060 1350600 4 4 2 4 4 4 4 4 4 4 4 2118300 3541400 25245 3776100 2174700 1834700 2202900 2470700 2634800 2152600 2984400 1972500 3305400 190420 3806700 2087000 2003100 2246400 2470500 2673900 2115400 2868100 11 11 7 11 11 11 11 11 11 11 11 399860000 219600000 180260000 13417 74 12439 70792;70793;70794;70795;70796;70797;70798;70799;70800;70801;70802;70803;70804;70805;70806;70807;70808;70809;70810;70811;70812 85576;85577;85578;85579;85580;85581;85582;85583;85584;85585;85586;85587;85588;85589;85590;85591;85592;85593;85594;85595 85594 42 20 MEVDYSATVDQR Unmodified 1412.6242 0.62419403 74 O00232;O00232-2 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes no 0 0 0 0 By MS/MS By MS/MS 2.75 0.661 3 4 1 3 5 44.505 44.446 2;3 1.8066E-38 14851 20211116_3441_TMUAki_TMT10x_S_F3 283.34 228.23 6026000 9280800 39255 10745000 8291300 8232200 6655200 5739400 5894400 5305700 7490300 5610700 8665400 516730 10821000 7908000 8485400 6812700 5948200 6086400 5199700 7176200 7 7 3 7 7 7 7 7 7 7 7 3274600 4955900 13150 6022700 5873500 6209700 4217300 3072700 3148400 2792300 4094000 3048900 4628400 298920 6071600 5589600 6244000 4331300 3274000 3283200 2738600 3920100 4 4 1 4 4 4 4 4 4 4 4 2751400 4324900 26104 4722700 2417800 2022400 2438000 2666700 2746000 2513400 3396300 2561700 4037000 217820 4749400 2318400 2241300 2481400 2674200 2803200 2461100 3256100 3 3 2 3 3 3 3 3 3 3 3 558540000 317790000 240750000 13418 74 12439 70813;70814;70815;70816;70817;70818;70819;70820 85596;85597;85598;85599;85600;85601;85602;85603;85604 85602 9 MEVKPPPGRPQPDSGR Acetyl (Protein N-term);Oxidation (M) 1804.889 0.88901635 1168 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 1 0 1 2 By MS/MS By MS/MS 3.38 1.32 1 1 2 2 2 5 3 27.994 27.954 3 1.1076E-07 8726 20211116_3441_TMUAki_TMT10x_S_F3 93.039 82.394 3209400 5352600 37766 6514200 6156000 5756200 4254900 4514700 5539700 3742200 5246400 2988400 4998900 331080 6552200 5856400 5882800 4455100 4629800 5569000 3686700 5070100 10 10 7 10 10 10 10 10 10 10 10 1068900 1809600 12497 2349000 3899500 3217300 1875200 1401300 1693200 1292800 1719400 995240 1690600 129970 2371200 3688300 3183200 2002300 1513200 1731500 1267100 1657800 8 8 6 8 8 8 8 8 8 8 8 2140500 3542900 25268 4165200 2256500 2538900 2379700 3113400 3846400 2449500 3527100 1993200 3308300 201110 4180900 2168100 2699700 2452800 3116600 3837600 2419600 3412300 2 2 1 2 2 2 2 2 2 2 2 752030000 530620000 221410000 13419 1168 12440 70821;70822;70823;70824;70825;70826;70827;70828 85605;85606;85607;85608;85609;85610;85611;85612;85613;85614 85613 1555 10 MEVKPPPGRPQPDSGR Acetyl (Protein N-term) 1788.8941 0.89410173 1168 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 1 0 0 2 By MS/MS By MS/MS 4.75 0.433 1 3 2 2 30.697 30.746 3 1.4962E-10 7772 20211116_3431_TMUAki_TMT10x_P_F4 80.411 60.043 2494900 3868100 76779 5946900 6384200 3607100 3249700 1974700 1776600 1867900 3746100 2323600 3617100 330030 5885000 6047300 3782300 3414600 2087000 1941700 1828600 3552700 4 4 3 4 4 4 4 4 4 4 4 1388800 1990500 25462 3147100 5438000 2907600 2323900 1032700 893380 1015100 1947400 1293300 1861700 195580 3125200 5137500 2934700 2475800 1144000 1008900 992110 1846000 2 2 2 2 2 2 2 2 2 2 2 1106100 1877600 51317 2799800 946170 699520 925830 942080 883220 852770 1798600 1030300 1755400 134450 2759700 909830 847620 938850 942930 932870 836540 1706700 2 2 1 2 2 2 2 2 2 2 2 659830000 494180000 165650000 13420 1168 12440 70829;70830;70831;70832 85615;85616;85617;85618 85615 4 MEVLAAETTSQQER Acetyl (Protein N-term);Oxidation (M) 1649.7567 0.75666477 356 O75781;O75781-2 PALM Paralemmin-1 yes no 1 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 46.02 45.798 2 8.5851E-53 12326 20211116_3428_TMUAki_TMT10x_P_F1 217.02 162.29 658660 1118200 23391 1479100 405960 436620 390880 876960 1101400 648550 921770 613460 1044700 72868 1467900 390300 519000 419270 862580 1083000 642820 894750 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 658660 1118200 23391 1479100 405960 436620 390880 876960 1101400 648550 921770 613460 1044700 72868 1467900 390300 519000 419270 862580 1083000 642820 894750 2 2 2 2 2 2 2 2 2 2 2 166750000 0 166750000 13421 356 12441 70833;70834 85619;85620;85621 85619 277 3 MEVSVSDK Unmodified 893.41643 0.41643309 2254 Q8NFW8 CMAS N-acylneuraminate cytidylyltransferase yes yes 0 0 0 0 By MS/MS 3 0 1 1 38.827 38.869 2 0.060318 11479 20211116_3430_TMUAki_TMT10x_P_F3 62.582 23.258 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13422 2254 12442 70835 85622 85622 1 MEVTGDAGVPESGEIR Acetyl (Protein N-term);Oxidation (M) 1703.7672 0.76722946 79 O00273;O00273-2 DFFA DNA fragmentation factor subunit alpha yes no 1 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 46.013 45.899 2 1.7582E-39 12361 20211116_3428_TMUAki_TMT10x_P_F1 146.07 129.93 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13423 79 12443 70836;70837 85623;85624 85623 47 2 MEVVEAAAAQLETLK Acetyl (Protein N-term);Oxidation (M) 1659.8389 0.83893784 2488 Q96HR8;Q96HR8-2 NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 yes no 1 0 1 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 82.354 82.33 2 2.1856E-30 30171 20211116_3441_TMUAki_TMT10x_S_F3 141.89 122.57 5820300 9903500 22942 8368000 6336800 8961000 6906000 5888600 6417100 6825700 7584700 5418700 9235300 415550 8654100 6085500 9023200 6960200 6170200 6591100 6627800 7280500 7 7 2 7 7 7 7 7 7 7 7 2871800 5002500 22942 4198500 2719100 5621700 3348000 3078700 3360500 3504200 3736800 2673900 4664900 232300 4361200 2622800 5582000 3363500 3271300 3431500 3404800 3593100 3 3 2 3 3 3 3 3 3 3 3 2948500 4901000 0 4169500 3617700 3339300 3558000 2809900 3056600 3321600 3847800 2744700 4570400 183250 4292800 3462700 3441200 3596700 2898900 3159600 3223000 3687400 4 4 0 4 4 4 4 4 4 4 4 653450000 281800000 371650000 13424 2488 12444 70838;70839;70840;70841;70842 85625;85626;85627;85628;85629;85630;85631;85632 85632 2773 8 MEVVEAAAAQLETLK Acetyl (Protein N-term) 1643.844 0.84402322 2488 Q96HR8;Q96HR8-2 NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 yes no 1 0 0 0 By MS/MS By MS/MS 2.75 0.829 2 1 1 2 2 85.43 85.422 2 5.9973E-52 29944 20211116_3429_TMUAki_TMT10x_P_F2 189.58 170.31 1617100 2416900 9159.3 2395000 1706200 1515200 1852400 1042300 1016000 1079100 1676500 1505700 2255200 127140 2431600 1639100 1587200 1845400 1084700 1093700 1052400 1596800 3 3 1 3 3 3 3 3 3 3 3 488320 670810 0 697300 396090 506600 468870 220660 216550 223760 453800 454570 626040 25922 706630 380760 521430 463980 238870 239760 218410 430420 1 1 0 1 1 1 1 1 1 1 1 1128800 1746100 9159.3 1697700 1310100 1008600 1383500 821680 799470 855300 1222700 1051100 1629100 101220 1725000 1258300 1065800 1381400 845870 853900 833940 1166400 2 2 1 2 2 2 2 2 2 2 2 61395000 31885000 29511000 13425 2488 12444 70843;70844;70845;70846 85633;85634;85635;85636 85633 4 MFDYTDDPEGPVMPGSHSVER 2 Oxidation (M) 2396.9889 0.98892591 1554 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 0 0 2 0 By MS/MS By MS/MS 2.8 0.748 2 2 1 2 3 42.776 42.713 3 4.2875E-08 12735 20211116_3430_TMUAki_TMT10x_P_F3 99.881 90.598 2154000 3864600 20556 4162800 3779700 5620700 2680400 6018400 6710600 4733700 4171700 2005500 3607200 166550 4247500 3595400 5645000 2901100 6060600 6560400 4676100 4102900 10 10 3 10 10 10 10 10 10 10 10 1317500 2315600 16253 2522600 3122600 4901300 2154000 3462600 3833600 2837700 2492200 1226700 2161500 130550 2594400 2969500 4814100 2287500 3574400 3778900 2797200 2445600 6 6 2 6 6 6 6 6 6 6 6 836520 1549000 4302.6 1640300 657050 719380 526440 2555800 2877000 1895900 1679600 778770 1445700 36004 1653100 625860 830930 613580 2486100 2781500 1878900 1657300 4 4 1 4 4 4 4 4 4 4 4 633510000 331420000 302090000 13426 1554 12445 70847;70848;70849;70850;70851 85637;85638;85639;85640;85641;85642;85643;85644;85645;85646 85641 2094;2095 10 MFDYTDDPEGPVMPGSHSVER Oxidation (M) 2380.994 0.99401128 1554 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 0 0 1 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 49.292 49.217 3 3.2046E-17 14015 20211116_3440_TMUAki_TMT10x_S_F2 133.24 129.52 487210 916770 10902 1117400 1151400 1341900 821700 705340 688650 609880 699900 453720 856190 59856 1129100 1096400 1338900 846600 746410 706800 599580 674820 1 1 1 1 1 1 1 1 1 1 1 487210 916770 10902 1117400 1151400 1341900 821700 705340 688650 609880 699900 453720 856190 59856 1129100 1096400 1338900 846600 746410 706800 599580 674820 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 148500000 148500000 0 13427 1554 12445 70852;70853 85647;85648 85648 2094;2095 2 MFEDPETTR Unmodified 1124.4808 0.48082426 1272 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E yes yes 0 0 0 0 By MS/MS 3 0 1 1 40.866 40.92 2 0.0020988 12290 20211116_3430_TMUAki_TMT10x_P_F3 82.563 65.467 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13428 1272 12446 70854 85649 85649 1 MFEELGQR Oxidation (M) 1024.4648 0.46478027 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 1 0 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 38.2 38.093 2 0.0052936 10689 20211116_3429_TMUAki_TMT10x_P_F2 100.39 88.034 1966500 3062700 33327 3471200 3845000 3086800 2107800 2694500 2916900 2319000 2952000 1831200 2859400 218750 3506600 3645000 3159500 2253900 2748100 2933300 2280300 2846600 3 3 2 3 3 3 3 3 3 3 3 1030500 1575400 29940 1786900 2947700 2282600 1289600 1321800 1465100 1175100 1507600 959750 1470800 140190 1815400 2786500 2273200 1400200 1388000 1484300 1153700 1453000 1 1 1 1 1 1 1 1 1 1 1 935920 1487400 3387.9 1684300 897290 804180 818210 1372700 1451900 1143900 1444400 871450 1388600 78561 1691200 858470 886310 853690 1360200 1449000 1126600 1393600 2 2 1 2 2 2 2 2 2 2 2 244460000 116000000 128460000 13429 2345 12447 70855;70856;70857;70858 85650;85651;85652 85650 2692 3 MFEELGQR Unmodified 1008.4699 0.46986564 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 49.34 48.985 2 0.0018657 15520 20211116_3430_TMUAki_TMT10x_P_F3 111.65 94.684 3571200 5392900 0 7108800 2870100 2583300 2806500 3314000 3247800 3259300 4379800 3325000 5038600 266970 7063200 2749100 2927200 2863700 3331000 3324900 3185400 4190000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3571200 5392900 0 7108800 2870100 2583300 2806500 3314000 3247800 3259300 4379800 3325000 5038600 266970 7063200 2749100 2927200 2863700 3331000 3324900 3185400 4190000 1 1 0 1 1 1 1 1 1 1 1 168270000 0 168270000 13430 2345 12447 70859;70860;70861 85653;85654;85655 85653 3 MFESFIESVPLLK Unmodified 1538.8055 0.80545286 660 P13861;P13861-2 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 81.578 81.583 3 3.6468E-06 27045 20211116_3436_TMUAki_TMT10x_P_F8 103.88 81.682 2711600 4400000 25134 4406900 2976300 2828200 3294400 1771900 1779200 2128700 3120600 2524900 4105700 247100 4471700 2863000 2954800 3278100 1865600 1923900 2064300 2968800 3 3 2 3 3 3 3 3 3 3 3 1068000 1694000 15368 1652500 947260 1272600 1217500 563210 612490 745710 1127400 994570 1580600 101180 1683100 916000 1303900 1202100 613890 667850 720780 1071600 1 1 1 1 1 1 1 1 1 1 1 1643600 2706000 9766.2 2754400 2029000 1555600 2076900 1208700 1166700 1383000 1993300 1530400 2525100 145920 2788600 1947000 1650900 2076000 1251700 1256100 1343600 1897200 2 2 1 2 2 2 2 2 2 2 2 351870000 221680000 130190000 13431 660 12448 70862;70863;70864 85656;85657;85658 85656 3 MFGGPGTASRPSSSR Oxidation (M) 1509.6994 0.69942466 561 P08670 VIM Vimentin yes yes 0 0 1 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 26.061 25.957 3 0.0009309 4035 20211116_3428_TMUAki_TMT10x_P_F1 72.891 55.226 228060 387150 0 355380 501280 432290 269960 257920 277980 223150 364640 212260 361140 7007.7 365940 474150 431730 286180 270000 285520 219370 349080 3 3 0 3 3 3 3 3 3 3 3 165970 271380 0 259860 438460 376650 207690 187670 198390 148590 270200 154450 253180 7007.7 267660 413920 372250 222450 199180 204780 146730 258430 2 2 0 2 2 2 2 2 2 2 2 62093 115770 0 95519 62825 55644 62271 70253 79593 74553 94443 57815 107950 0 98279 60226 59474 63729 70820 80741 72635 90646 1 1 0 1 1 1 1 1 1 1 1 37629000 18621000 19008000 13432 561 12449 70865;70866;70867;70868 85659;85660;85661 85659 527 3 MFGGPGTASRPSSSR Unmodified 1493.7045 0.70451004 561 P08670 VIM Vimentin yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 31.518 31.408 3 1.0035E-09 6936 20211116_3431_TMUAki_TMT10x_P_F4 109.92 99.159 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13433 561 12449 70869;70870 85662;85663 85662 2 MFGIDRDAIAQAVR Oxidation (M) 1577.7984 0.79841043 853 P29401;P29401-2 TKT Transketolase yes no 0 0 1 1 By MS/MS By MS/MS 7 0 2 1 1 50.584 51.166 3 0.00024727 16305 20211116_3446_TMUAki_TMT10x_S_F7 82.483 58.632 12137000 21465000 106900 20920000 14101000 16346000 11866000 19072000 20471000 17345000 18276000 11301000 20027000 1060600 21312000 13466000 16996000 12420000 19202000 20371000 17011000 17698000 4 4 2 4 4 4 4 4 4 4 4 2769200 4458400 18505 4187600 4717600 6737200 3474800 4379000 4570100 3776200 3668800 2578500 4159200 274120 4329300 4493300 6653200 3623500 4553200 4569400 3712800 3567100 1 1 1 1 1 1 1 1 1 1 1 9367400 17006000 88394 16733000 9383400 9609000 8391600 14694000 15901000 13569000 14607000 8722100 15868000 786520 16983000 8972900 10343000 8796300 14649000 15802000 13298000 14131000 3 3 1 3 3 3 3 3 3 3 3 834780000 507260000 327520000 13434 853 12450 70871;70872 85664;85665;85666;85667 85667 1020 4 MFGIDRDAIAQAVR Unmodified 1561.8035 0.8034958 853 P29401;P29401-2 TKT Transketolase yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 58.108 58.179 3 9.3057E-14 16896 20211116_3447_TMUAki_TMT10x_S_F8 143.46 103.8 15810000 25434000 87806 27501000 20685000 26927000 16671000 17588000 19182000 16697000 19103000 14719000 23741000 1283100 27901000 19727000 27257000 17198000 18327000 19401000 16343000 18430000 3 3 1 3 3 3 3 3 3 3 3 11937000 19010000 87806 20500000 17620000 23966000 13303000 13452000 15069000 12981000 14516000 11114000 17744000 987330 20860000 16781000 23965000 13774000 14193000 15233000 12697000 14020000 2 2 1 2 2 2 2 2 2 2 2 3872600 6424300 0 7001200 3064600 2961400 3368000 4136400 4113100 3715600 4586800 3605700 5996700 295720 7041200 2945200 3292400 3423500 4133700 4168600 3646200 4410100 1 1 0 1 1 1 1 1 1 1 1 1094700000 484830000 609830000 13435 853 12450 70873;70874 85668;85669;85670 85670 3 MFGIPVVVAVNAFK Oxidation (M) 1506.8269 0.82685701 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 1 0 By MS/MS By MS/MS 4.62 0.484 3 5 5 3 79.225 79.231 2;3 7.5287E-14 25514 20211116_3444_TMUAki_TMT10x_S_F5 155.42 137.69 23872000 39488000 230670 34377000 28253000 42706000 30995000 33062000 32905000 31558000 31700000 22228000 36827000 2157400 35555000 27166000 42775000 31355000 34057000 33349000 30883000 30617000 7 7 5 7 7 7 7 7 7 7 7 12924000 20476000 79657 18749000 14443000 27995000 15885000 17595000 17597000 16833000 16873000 12034000 19100000 1068900 19387000 13884000 27716000 16090000 18392000 17801000 16471000 16299000 4 4 2 4 4 4 4 4 4 4 4 10948000 19012000 151010 15628000 13809000 14710000 15110000 15467000 15308000 14725000 14828000 10195000 17727000 1088500 16168000 13283000 15059000 15265000 15665000 15548000 14412000 14319000 3 3 3 3 3 3 3 3 3 3 3 6437500000 3369500000 3067900000 13436 629 12451 70875;70876;70877;70878;70879;70880;70881;70882 85671;85672;85673;85674;85675;85676;85677;85678 85678 654 8 MFGIPVVVAVNAFK Unmodified 1490.8319 0.83194239 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 2 4 3 3 80.828 80.844 2;3 2.3071E-60 28577 20211116_3446_TMUAki_TMT10x_S_F7 303.15 266.45 25744000 40493000 73986 39128000 26649000 30694000 31432000 14430000 11433000 17415000 23888000 23970000 37779000 2129500 39887000 25671000 31424000 31014000 15581000 12948000 16886000 22659000 6 6 2 6 6 6 6 6 6 6 6 10890000 17262000 10962 16247000 10609000 18014000 13155000 7441200 5955800 8387300 10713000 10139000 16104000 867410 16672000 10234000 18005000 12988000 8127600 6542800 8152500 10188000 3 3 1 3 3 3 3 3 3 3 3 14854000 23230000 63024 22881000 16040000 12680000 18277000 6988600 5476800 9028000 13175000 13831000 21675000 1262100 23215000 15437000 13419000 18026000 7453800 6405000 8733200 12471000 3 3 1 3 3 3 3 3 3 3 3 3609000000 2007300000 1601700000 13437 629 12451 70883;70884;70885;70886;70887;70888 85679;85680;85681;85682;85683;85684 85682 6 MFGMVLEK Unmodified 953.47145 0.47144555 1234 P55060;P55060-3;P55060-4 CSE1L Exportin-2 yes no 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 68.957 68.933 2 0.0037372 21841 20211116_3436_TMUAki_TMT10x_P_F8 100.15 45.741 24956000 39185000 123100 46167000 28900000 24007000 28806000 9934400 8443800 11661000 25255000 23237000 36590000 2130700 46273000 27708000 25507000 28594000 10862000 10078000 11317000 23842000 2 2 1 2 2 2 2 2 2 2 2 13355000 20280000 123100 24374000 17191000 16210000 17781000 4563100 3576600 5932200 13265000 12436000 18939000 1275700 24454000 16506000 16756000 17565000 5268200 4603900 5737300 12496000 1 1 1 1 1 1 1 1 1 1 1 11601000 18905000 0 21793000 11709000 7796200 11025000 5371300 4867200 5728600 11989000 10801000 17651000 855050 21819000 11203000 8751100 11028000 5594200 5473800 5580100 11345000 1 1 0 1 1 1 1 1 1 1 1 1464600000 743900000 720670000 13438 1234 12452 70889;70890;70891 85685;85686;85687 85685 3 MFIGGLSWDTSKK Oxidation (M) 1484.7334 0.73335055 151;152 O14979;O14979-3;O14979-2 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like no no 0 0 1 1 By MS/MS 2 0.816 1 1 1 3 59.86 59.687 3 0.013051 19481 20211116_3429_TMUAki_TMT10x_P_F2 54.598 39.908 48973000 80544000 432610 75810000 86013000 114660000 72701000 38519000 35244000 43602000 64838000 45602000 75138000 4982100 78254000 82165000 112700000 73280000 43158000 38544000 42374000 61631000 3 3 3 3 3 3 3 3 3 3 3 48973000 80544000 432610 75810000 86013000 114660000 72701000 38519000 35244000 43602000 64838000 45602000 75138000 4982100 78254000 82165000 112700000 73280000 43158000 38544000 42374000 61631000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2754400000 2754400000 0 13439 151;152 12453 70892;70893;70894 85688;85689;85690 85688 105 3 MFIGGLSWDTSKK Unmodified 1468.7384 0.73843593 151;152 O14979;O14979-3;O14979-2 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like no no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 67.535 67.301 3 1.3535E-14 21868 20211116_3442_TMUAki_TMT10x_S_F4 166.38 142.9 37004000 62511000 421040 74226000 37332000 52872000 39875000 17472000 12999000 20004000 38880000 34454000 58373000 2991900 74576000 35855000 54384000 39482000 19627000 15319000 19433000 36705000 3 3 2 3 3 3 3 3 3 3 3 26397000 43864000 421040 44124000 37230000 39060000 38881000 13671000 9274700 15075000 27833000 24582000 40931000 2732600 44919000 35765000 39534000 38436000 15223000 11390000 14665000 26275000 2 2 2 2 2 2 2 2 2 2 2 10607000 18647000 0 30102000 102230 13812000 993710 3801500 3724500 4929500 11048000 9871900 17442000 259260 29656000 89688 14850000 1045900 4404000 3929400 4767900 10431000 1 1 0 1 1 1 1 1 1 1 1 2262700000 818650000 1444100000 13440 151;152 12453 70895;70896 85691;85692;85693 85693 3 MFIGGLSWDTTKK Oxidation (M) 1498.749 0.74900062 1675 Q14103;Q14103-3;Q14103-4;Q14103-2 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes no 0 0 1 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 60.604 60.304 3 0.0009555 20228 20211116_3430_TMUAki_TMT10x_P_F3 74.678 47.937 34102000 54446000 761080 61208000 34249000 43708000 40762000 26560000 27824000 33144000 43026000 31758000 50829000 3538600 61703000 33049000 45221000 40606000 28067000 29412000 32099000 41035000 5 5 5 5 5 5 5 5 5 5 5 12750000 18919000 193190 21137000 19461000 23328000 18354000 9020400 9366400 11127000 14540000 11873000 17661000 1331100 21439000 18644000 23308000 18397000 9956400 10106000 10780000 13866000 2 2 2 2 2 2 2 2 2 2 2 21352000 35527000 567890 40071000 14788000 20381000 22408000 17539000 18458000 22018000 28486000 19885000 33168000 2207600 40264000 14405000 21913000 22209000 18110000 19306000 21319000 27169000 3 3 3 3 3 3 3 3 3 3 3 4628900000 2379600000 2249300000 13441 1675 12454 70897;70898;70899;70900 85694;85695;85696;85697;85698 85695 2243 5 MFIGGLSWDTTKK Unmodified 1482.7541 0.754086 1675 Q14103;Q14103-3;Q14103-4;Q14103-2 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes no 0 0 0 1 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 68.106 67.877 3 1.4886E-11 21577 20211116_3431_TMUAki_TMT10x_P_F4 145.81 128.15 136430000 205020000 2337300 258690000 126170000 147410000 165600000 67855000 58973000 80338000 141400000 127040000 191510000 12992000 258450000 122090000 155250000 162610000 73379000 67586000 77948000 133850000 9 9 4 9 9 9 9 9 9 9 9 65938000 97341000 687750 119250000 82213000 98171000 91534000 39617000 34753000 43269000 68574000 61397000 90911000 6008700 119790000 79084000 99994000 90601000 43344000 39040000 42108000 65104000 6 6 2 6 6 6 6 6 6 6 6 70489000 107680000 1649600 139440000 43955000 49244000 74064000 28238000 24221000 37069000 72827000 65644000 100600000 6982900 138660000 43002000 55258000 72009000 30035000 28546000 35840000 68749000 3 3 2 3 3 3 3 3 3 3 3 8859400000 4975600000 3883800000 13442 1675 12454 70901;70902;70903;70904;70905 85699;85700;85701;85702;85703;85704;85705;85706;85707 85704 9 MFLQYYLNEQGDR Unmodified 1675.7664 0.7664416 2891 Q9NPE3 NOP10 H/ACA ribonucleoprotein complex subunit 3 yes yes 0 0 0 0 By MS/MS 8 0 1 1 75.45 75.464 3 0.030357 24541 20211116_3436_TMUAki_TMT10x_P_F8 47.987 34.325 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13443 2891 12455 70906 85708 85708 1 MFLQYYLNEQGDRVYTLK Oxidation (M) 2296.1198 0.11980414 2891 Q9NPE3 NOP10 H/ACA ribonucleoprotein complex subunit 3 yes yes 0 0 1 1 By MS/MS 2 0 1 1 72.58 72.467 3 0.0051376 23396 20211116_3440_TMUAki_TMT10x_S_F2 58.427 45.389 3352300 5742100 0 4906700 5114900 4050100 4572700 4721200 4736800 4385100 4868000 3121300 5354800 301180 5051900 4890600 4193900 4671700 4756200 4816300 4296600 4691900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3352300 5742100 0 4906700 5114900 4050100 4572700 4721200 4736800 4385100 4868000 3121300 5354800 301180 5051900 4890600 4193900 4671700 4756200 4816300 4296600 4691900 1 1 0 1 1 1 1 1 1 1 1 714530000 0 714530000 13444 2891 12456 70907 85709 85709 3007 1 MFLQYYLNEQGDRVYTLK Unmodified 2280.1249 0.12488952 2891 Q9NPE3 NOP10 H/ACA ribonucleoprotein complex subunit 3 yes yes 0 0 0 1 By MS/MS 3 0 1 1 77.165 77.067 3 0.00027581 28075 20211116_3441_TMUAki_TMT10x_S_F3 67.449 52.195 4750600 7394500 0 7336600 6612100 4542400 6444500 3162200 2793800 3585200 5510400 4423100 6899600 405330 7446900 6334800 4768900 6432600 3297400 3098400 3484000 5231600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4750600 7394500 0 7336600 6612100 4542400 6444500 3162200 2793800 3585200 5510400 4423100 6899600 405330 7446900 6334800 4768900 6432600 3297400 3098400 3484000 5231600 1 1 0 1 1 1 1 1 1 1 1 655200000 0 655200000 13445 2891 12456 70908 85710 85710 1 MFLSFPTTK Oxidation (M) 1086.542 0.54196796 36 CON__P01966;P69905 HBA1 Hemoglobin subunit alpha yes no 0 0 1 0 By MS/MS By MS/MS 3.07 2.19 3 4 4 1 2 7 7 62.875 62.686 2;3 2.8567E-05 21301 20211116_3439_TMUAki_TMT10x_S_F1 104.2 78.079 + 81145000 125840000 568250 139780000 174720000 275610000 145910000 296120000 386510000 284890000 184730000 75557000 117480000 8411300 143650000 166830000 272860000 156950000 299080000 375490000 278700000 183740000 18 18 11 18 18 18 18 17 18 18 17 61435000 92848000 447280 103440000 154010000 255680000 122680000 228990000 287820000 209980000 143970000 57205000 86677000 6759500 107050000 146910000 250480000 131190000 233600000 280480000 205860000 143340000 11 11 8 11 11 11 11 11 11 11 11 19710000 32996000 120970 36348000 20715000 19931000 23227000 67131000 98688000 74909000 40757000 18352000 30801000 1651800 36599000 19926000 22378000 25765000 65488000 95013000 72839000 40399000 7 7 3 7 7 7 7 6 7 7 6 40300000000 23131000000 17168000000 13446 36 12457 70909;70910;70911;70912;70913;70914;70915;70916;70917;70918;70919;70920;70921;70922 85711;85712;85713;85714;85715;85716;85717;85718;85719;85720;85721;85722;85723;85724;85725;85726;85727;85728;85729 85723 17 19 MFLSFPTTK Unmodified 1070.5471 0.54705333 36 CON__P01966;P69905 HBA1 Hemoglobin subunit alpha yes no 0 0 0 0 By MS/MS By MS/MS 3.64 1.07 2 3 3 3 5 6 71.499 71.372 2;3 1.5005E-10 25923 20211116_3441_TMUAki_TMT10x_S_F3 220.51 181.36 + 99252000 135550000 519440 176350000 132390000 139270000 141180000 109290000 92441000 141260000 142800000 92411000 126640000 8415600 176470000 127140000 143490000 141240000 113580000 97962000 136650000 136190000 15 15 6 15 15 15 15 15 15 15 15 41038000 55289000 401040 68802000 79637000 101430000 83282000 45472000 39731000 56297000 56511000 38212000 51641000 4079300 69722000 76460000 100060000 82938000 49380000 42921000 54537000 53994000 8 8 4 8 8 8 8 8 8 8 8 58214000 80266000 118400 107550000 52752000 37843000 57903000 63814000 52709000 84965000 86286000 54199000 74999000 4336300 106750000 50684000 43435000 58303000 64204000 55041000 82110000 82198000 7 7 2 7 7 7 7 7 7 7 7 12560000000 8149800000 4409800000 13447 36 12457 70923;70924;70925;70926;70927;70928;70929;70930;70931;70932;70933 85730;85731;85732;85733;85734;85735;85736;85737;85738;85739;85740;85741;85742;85743;85744;85745;85746;85747 85740 18 MFLYADNEDR Oxidation (M) 1288.5394 0.53940177 2882 Q9NP79;Q9NP79-2 VTA1 Vacuolar protein sorting-associated protein VTA1 homolog yes no 0 0 1 0 By MS/MS By MS/MS 3 0 2 1 1 43.824 43.858 2 1.1376E-05 14682 20211116_3441_TMUAki_TMT10x_S_F3 105.94 86.832 597500 891420 2236.2 1134100 1609800 1371100 825300 705870 808370 582510 832660 556350 832700 65799 1143300 1524000 1367200 877640 747560 823980 573990 802490 1 1 1 1 1 1 1 1 1 1 1 597500 891420 2236.2 1134100 1609800 1371100 825300 705870 808370 582510 832660 556350 832700 65799 1143300 1524000 1367200 877640 747560 823980 573990 802490 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 105150000 105150000 0 13448 2882 12458 70934;70935 85748;85749 85749 3000 2 MFQAAGAAQATPSHDAK Acetyl (Protein N-term);Oxidation (M) 1758.7995 0.79953264 2656 Q9BT23 LIMD2 LIM domain-containing protein 2 yes yes 1 0 1 0 By MS/MS By MS/MS 4 0 2 1 1 36.159 36.226 3 3.2878E-05 9235 20211116_3442_TMUAki_TMT10x_S_F4 69.111 53.346 2165000 3871200 1163.2 4903000 6037500 7468800 3720800 4135400 5456500 3617300 3435600 2015800 3616100 231990 4967400 5730700 7375500 3949000 4357300 5403400 3554200 3376800 2 2 1 2 2 2 2 2 2 2 2 2057200 3689300 0 4688200 5924200 7371800 3602600 4067600 5376600 3533800 3315800 1915500 3446200 221890 4752300 5621900 7270200 3830600 4286500 5319000 3473200 3262400 1 1 0 1 1 1 1 1 1 1 1 107790 181950 1163.2 214800 113300 96936 118190 67755 79875 83520 119870 100370 169900 10098 215050 108830 105370 118440 70833 84355 80920 114400 1 1 1 1 1 1 1 1 1 1 1 175050000 168370000 6681200 13449 2656 12459 70936;70937 85750 85750 2883 1 MFQAAGAAQATPSHDAK Acetyl (Protein N-term) 1742.8046 0.80461802 2656 Q9BT23 LIMD2 LIM domain-containing protein 2 yes yes 1 0 0 0 By MS/MS 4 0 1 1 44.871 45.082 3 2.7123E-06 12778 20211116_3442_TMUAki_TMT10x_S_F4 79.805 65.899 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13450 2656 12459 70938 85751 85751 1 MFQVPDSEGGR Acetyl (Protein N-term);Oxidation (M) 1279.5503 0.55030081 2834 Q9H910;Q9H910-3 HN1L Hematological and neurological expressed 1-like protein yes no 1 0 1 0 By matching By MS/MS 1 0 2 1 1 46.91 46.794 2 4.1083E-07 14765 20211116_3439_TMUAki_TMT10x_S_F1 115.86 99.314 972980 1802600 13493 2010100 1031500 954250 839610 1833700 1821100 1470100 1558500 906040 1682800 94062 2020100 985060 1057000 892070 1809100 1800300 1450800 1511600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 972980 1802600 13493 2010100 1031500 954250 839610 1833700 1821100 1470100 1558500 906040 1682800 94062 2020100 985060 1057000 892070 1809100 1800300 1450800 1511600 1 1 1 1 1 1 1 1 1 1 1 118320000 66335000 51983000 13451 2834 12460 70939;70940 85752 85752 2970 1 MFSSSAK Acetyl (Protein N-term);Oxidation (M) 814.3531 0.35310455 1332 P62081 RPS7 40S ribosomal protein S7 yes yes 1 0 1 0 By MS/MS 3 0 1 1 31.657 31.63 2 0.02409 8666 20211116_3430_TMUAki_TMT10x_P_F3 70.912 60.498 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13452 1332 12461 70941 85753 85753 1788 1 MFTQQQPQELAR Oxidation (M) 1491.714 0.7140121 2430 Q96CX2 KCTD12 BTB/POZ domain-containing protein KCTD12 yes yes 0 0 1 0 By MS/MS By MS/MS 5 0.707 1 2 1 3 1 37.032 37.099 2 1.083E-14 8352 20211116_3444_TMUAki_TMT10x_S_F5 180.15 164.14 735790 1194800 4081.9 1657000 1681100 1258700 853920 1380800 1775500 992730 1399500 685110 1116600 76110 1651800 1591200 1309600 937950 1386100 1752600 985540 1361700 3 3 2 3 3 3 3 3 3 3 3 337790 512530 4059.7 684800 1282800 954660 510500 578780 743880 428180 566030 314550 478890 45024 690480 1210800 947450 565420 602930 740240 424390 551530 1 1 1 1 1 1 1 1 1 1 1 398000 682240 22.236 972220 398330 304090 343430 802020 1031600 564550 833490 370560 637690 31086 961360 380430 362190 372530 783210 1012400 561160 810170 2 2 1 2 2 2 2 2 2 2 2 107440000 72619000 34817000 13453 2430 12462 70942;70943;70944;70945 85754;85755;85756;85757;85758 85758 2749 5 MFVEEVSTGQECGVVLDK Unmodified 2025.9387 0.93872824 1104 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS 2 0 1 1 70.777 70.494 3 8.6154E-11 23957 20211116_3429_TMUAki_TMT10x_P_F2 121.27 109.29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13454 1104 12463 70946 85759 85759 1 MFVGGLSWDTSKK Oxidation (M) 1470.7177 0.71770049 2601 Q99729-3;Q99729-2;Q99729;Q99729-4 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 0 0 1 1 By MS/MS By MS/MS 3.25 2.77 1 2 1 3 1 56.564 56.331 3 0.0010302 16831 20211116_3440_TMUAki_TMT10x_S_F2 73.91 61.032 37041000 61801000 495850 61747000 58059000 58228000 48120000 38206000 35682000 39726000 52171000 34493000 57667000 3827400 62944000 55450000 59086000 48945000 39901000 37429000 38736000 49817000 5 5 5 5 5 5 5 5 5 5 5 17121000 26853000 294770 27425000 35532000 40727000 28695000 16484000 15922000 17900000 22258000 15944000 25059000 1952000 28137000 33915000 40125000 29068000 18026000 16982000 17424000 21276000 2 2 2 2 2 2 2 2 2 2 2 19920000 34947000 201080 34322000 22527000 17501000 19426000 21722000 19760000 21826000 29913000 18549000 32607000 1875400 34807000 21534000 18961000 19877000 21875000 20448000 21312000 28541000 3 3 3 3 3 3 3 3 3 3 3 2713000000 1649300000 1063800000 13455 2601 12464 70947;70948;70949;70950 85760;85761;85762;85763;85764;85765;85766 85765 2839 7 MFVGGLSWDTSKK Unmodified 1454.7228 0.72278587 2601 Q99729-3;Q99729-2;Q99729;Q99729-4 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 0 0 0 1 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 63.887 63.676 3 2.3932E-18 19908 20211116_3440_TMUAki_TMT10x_S_F2 147.18 117.84 76505000 119070000 1223900 141050000 102550000 85631000 99237000 31897000 25256000 39004000 86411000 71242000 111190000 7848200 141520000 98318000 89446000 98543000 35356000 31101000 37801000 81465000 5 5 5 5 5 5 5 5 5 5 5 39577000 59482000 460350 68628000 72197000 62254000 64534000 17039000 14244000 20371000 43252000 36853000 55537000 4167100 69271000 69061000 62798000 64304000 19705000 17720000 19758000 40826000 3 3 3 3 3 3 3 3 3 3 3 36928000 59590000 763570 72425000 30351000 23376000 34703000 14859000 11013000 18633000 43159000 34389000 55651000 3681100 72245000 29257000 26648000 34240000 15650000 13381000 18043000 40639000 2 2 2 2 2 2 2 2 2 2 2 4942600000 3058100000 1884500000 13456 2601 12464 70951;70952;70953;70954;70955;70956 85767;85768;85769;85770;85771;85772;85773;85774 85771 8 MFVGQVPR Unmodified 932.49021 0.49020716 2371 Q92879;Q92879-4;Q92879-5;Q92879-2;Q92879-3;Q92879-6 CELF1 CUGBP Elav-like family member 1 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 45.669 45.64 2 0.027367 12486 20211116_3440_TMUAki_TMT10x_S_F2 64.803 46.138 3770500 6135800 89421 7020800 2866700 4039100 3369700 3932600 4119000 4215800 4696500 3511400 5728700 383280 7055300 2766800 4296300 3414900 4012200 4178000 4105700 4512700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3770500 6135800 89421 7020800 2866700 4039100 3369700 3932600 4119000 4215800 4696500 3511400 5728700 383280 7055300 2766800 4296300 3414900 4012200 4178000 4105700 4512700 1 1 1 1 1 1 1 1 1 1 1 146650000 0 146650000 13457 2371 12465 70957;70958 85775;85776 85776 2 MFVGQVPR Oxidation (M) 948.48512 0.48512178 2371 Q92879;Q92879-4;Q92879-5;Q92879-2;Q92879-3;Q92879-6 CELF1 CUGBP Elav-like family member 1 yes no 0 0 1 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 35.987 36.304 2 0.0081035 7775 20211116_3447_TMUAki_TMT10x_S_F8 94.777 69.778 966830 1554900 9737.6 1577800 1736000 1633000 1072600 1198600 1290400 1078300 1368800 900280 1451000 98915 1608900 1648400 1650400 1129400 1236900 1306000 1058000 1318000 5 5 4 5 5 5 5 5 5 5 5 616880 944010 3792.9 971880 1383600 1321500 754450 691590 783010 652340 833890 574400 880970 64328 994740 1311000 1310500 799050 733770 797130 638730 802850 3 3 2 3 3 3 3 3 3 3 3 349950 610900 5944.7 605970 352390 311500 318140 506970 507430 425910 534870 325880 570010 34588 614130 337390 339890 330360 503160 508910 419310 515120 2 2 2 2 2 2 2 2 2 2 2 206870000 136030000 70844000 13458 2371 12465 70959;70960;70961;70962 85777;85778;85779;85780 85779 2709 4 MFVLDEADEMLSR 2 Oxidation (M) 1586.6956 0.69564442 1277;1697 P60842;P60842-2;Q14240;Q14240-2 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 0 0 2 0 By MS/MS By MS/MS 2.21 1.01 4 5 3 2 6 8 58.939 58.737 2;3 2.4451E-06 19543 20211116_3439_TMUAki_TMT10x_S_F1 111.31 95.089 58905000 99437000 719780 94085000 69811000 100010000 64898000 96329000 96349000 85141000 84934000 54847000 92766000 5136100 96449000 66821000 101440000 67059000 97792000 96238000 83615000 82286000 22 22 10 22 22 22 22 22 22 22 22 26754000 43503000 50916 40429000 33468000 64109000 32309000 45139000 45634000 38310000 38170000 24909000 40581000 1997000 41815000 32041000 63423000 33246000 46647000 45577000 37697000 37052000 9 9 2 9 9 9 9 9 9 9 9 32150000 55934000 668870 53656000 36343000 35906000 32589000 51190000 50715000 46832000 46764000 29938000 52184000 3139100 54633000 34780000 38017000 33814000 51145000 50660000 45918000 45234000 13 13 8 13 13 13 13 13 13 13 13 15767000000 7597600000 8169300000 13459 1277;1697 12466 70963;70964;70965;70966;70967;70968;70969;70970;70971;70972;70973;70974;70975;70976 85781;85782;85783;85784;85785;85786;85787;85788;85789;85790;85791;85792;85793;85794;85795;85796;85797;85798;85799;85800;85801;85802 85793 1733;1734 22 MFVLDEADEMLSR Oxidation (M) 1570.7007 0.7007298 1277;1697 P60842;P60842-2;Q14240;Q14240-2 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 0 0 1 0 By MS/MS By MS/MS 2.38 1.07 10 14 11 6 1 23 19 69.635 69.5 2;3 6.5147E-41 25825 20211116_3430_TMUAki_TMT10x_P_F3 242.97 220.23 164740000 265320000 1893300 243800000 185750000 225570000 195820000 128520000 112180000 138520000 191530000 153390000 247490000 14567000 249970000 178400000 228740000 195510000 135870000 120600000 134870000 182300000 39 39 19 39 39 39 39 39 39 39 39 86835000 134390000 872620 124460000 85690000 143490000 102790000 66174000 57321000 71682000 97584000 80851000 125360000 7076700 127960000 82586000 143260000 101960000 71348000 61733000 69781000 92889000 23 23 9 23 23 23 23 23 23 23 23 77901000 130940000 1020700 119340000 100060000 82082000 93027000 62348000 54857000 66835000 93945000 72539000 122130000 7490400 122010000 95812000 85475000 93548000 64522000 58864000 65090000 89415000 16 16 10 16 16 16 16 16 16 16 16 35951000000 19372000000 16579000000 13460 1277;1697 12466 70977;70978;70979;70980;70981;70982;70983;70984;70985;70986;70987;70988;70989;70990;70991;70992;70993;70994;70995;70996;70997;70998;70999;71000;71001;71002;71003;71004;71005;71006;71007;71008;71009;71010;71011;71012;71013;71014;71015;71016;71017;71018 85803;85804;85805;85806;85807;85808;85809;85810;85811;85812;85813;85814;85815;85816;85817;85818;85819;85820;85821;85822;85823;85824;85825;85826;85827;85828;85829;85830;85831;85832;85833;85834;85835;85836;85837;85838;85839;85840;85841;85842;85843;85844;85845;85846;85847 85825 1733;1734 45 MFVLDEADEMLSR Unmodified 1554.7058 0.70581517 1277;1697 P60842;P60842-2;Q14240;Q14240-2 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS 2.25 1.18 7 5 5 2 1 5 15 68.309 68.282 2 4.3322E-67 27276 20211116_3429_TMUAki_TMT10x_P_F2 335.25 295.4 113080000 172730000 247130 189920000 115140000 82037000 130890000 30816000 28762000 42462000 102410000 105280000 161240000 7989500 190930000 110700000 89077000 128780000 34265000 36343000 40991000 96516000 13 13 6 13 13 13 13 13 13 13 13 56025000 80840000 67194 85447000 48363000 45460000 60332000 10985000 10821000 16917000 46836000 52156000 75450000 3376500 86246000 46598000 48004000 59039000 13086000 14453000 16277000 44066000 4 4 2 4 4 4 4 4 4 4 4 57057000 91892000 179930 104480000 66774000 36576000 70559000 19831000 17941000 25545000 55578000 53123000 85792000 4613000 104680000 64105000 41073000 69744000 21179000 21890000 24713000 52449000 9 9 4 9 9 9 9 9 9 9 9 18770000000 10012000000 8758100000 13461 1277;1697 12466 71019;71020;71021;71022;71023;71024;71025;71026;71027;71028;71029;71030;71031;71032;71033;71034;71035;71036;71037;71038 85848;85849;85850;85851;85852;85853;85854;85855;85856;85857;85858;85859;85860;85861;85862;85863;85864;85865;85866;85867;85868;85869 85850 22 MFYEEHLHLDDEIR Oxidation (M) 1861.8305 0.83049842 2684 Q9BV57;Q9BV57-2 ADI1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase yes no 0 0 1 0 By matching By MS/MS 2.5 1.12 1 1 1 1 2 2 47.67 47.556 4 0.0016642 16125 20211116_3441_TMUAki_TMT10x_S_F3 63.894 51.993 673710 970330 32669 1101000 608340 621610 573810 835550 720730 667230 987490 627530 905910 85385 1106800 584410 667630 588400 833700 736260 658590 944340 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 673710 970330 32669 1101000 608340 621610 573810 835550 720730 667230 987490 627530 905910 85385 1106800 584410 667630 588400 833700 736260 658590 944340 1 1 1 1 1 1 1 1 1 1 1 466640000 319340000 147300000 13462 2684 12467 71039;71040;71041;71042 85870 85870 2894 1 MGAGLGHGMDR Oxidation (M) 1116.4804 0.48044711 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 1 0 By MS/MS By MS/MS 4 0.707 1 2 1 3 1 26.542 26.48 3 0.0022285 5756 20211116_3433_TMUAki_TMT10x_P_F5 70.942 56.275 881710 1335400 30654 1305800 1119000 1384900 989830 1354500 930740 914380 1057700 821160 1246000 102100 1335400 1071400 1405300 1009000 1365500 953960 911160 1016400 4 4 3 4 4 4 4 4 4 4 4 708190 1063400 30654 1022300 921000 1246100 755670 1277700 855110 805350 868760 659620 992070 90263 1049100 880800 1256400 778230 1283400 866060 806010 837640 3 3 3 3 3 3 3 3 3 3 3 173520 272050 0 283570 198040 138750 234160 76730 75631 109030 188930 161540 253890 11833 286310 190610 148890 230720 82111 87898 105150 178740 1 1 0 1 1 1 1 1 1 1 1 76592000 70140000 6452600 13463 1171 12468 71043;71044;71045;71046 85871;85872;85873;85874 85873 1566;1567 4 MGAGLGHGMDR Unmodified 1100.4855 0.48553248 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 31.596 31.532 3 0.00089003 7010 20211116_3431_TMUAki_TMT10x_P_F4 78.548 61.163 1026100 1789800 0 1693900 2656600 1826400 1582500 683360 721050 783340 1342600 955200 1669700 88608 1736800 2519000 1826800 1634700 755470 793300 760940 1275900 1 1 0 1 1 1 1 1 1 1 1 1026100 1789800 0 1693900 2656600 1826400 1582500 683360 721050 783340 1342600 955200 1669700 88608 1736800 2519000 1826800 1634700 755470 793300 760940 1275900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39221000 39221000 0 13464 1171 12468 71047;71048 85875;85876 85875 2 MGAGMGFGLER 2 Oxidation (M) 1156.5005 0.50051385 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 2 0 By MS/MS By MS/MS 5.11 1.2 1 2 2 3 1 5 4 36.539 36.603 2 0.0031087 8258 20211116_3434_TMUAki_TMT10x_P_F6 70.747 56.752 4717400 8056200 5194.5 8362100 10088000 10050000 6122100 6774900 8206100 5996000 7555800 4392100 7518400 428600 8534400 9571700 10061000 6481800 7030200 8234100 5888100 7309000 11 11 3 11 11 11 11 11 11 11 11 3047500 5126900 3394.6 5381000 8403800 8558300 4472300 4279000 5146200 3904200 4910500 2837400 4784900 317710 5519000 7958500 8426500 4762900 4555300 5197500 3828500 4744300 5 5 1 5 5 5 5 5 5 5 5 1669900 2929300 1799.9 2981100 1684500 1492000 1649800 2495900 3059900 2091800 2645400 1554700 2733600 110890 3015300 1613300 1634400 1719000 2474900 3036500 2059600 2564700 6 6 2 6 6 6 6 6 6 6 6 1088600000 804360000 284220000 13465 1171 12469 71049;71050;71051;71052;71053;71054;71055;71056;71057 85877;85878;85879;85880;85881;85882;85883;85884;85885;85886 85880 1568;1569 10 MGAGMGFGLER Oxidation (M) 1140.5056 0.50559922 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 1 0 By MS/MS By MS/MS 5.29 1.03 2 2 2 1 3 4 44.933 45.129 2 0.00043277 11459 20211116_3444_TMUAki_TMT10x_S_F5 94.909 72.761 21873000 35599000 109420 43917000 38117000 36307000 25522000 23902000 22154000 20742000 29581000 20366000 33249000 2040000 44101000 36232000 37178000 26442000 24833000 22949000 20388000 28306000 9 9 4 9 9 9 9 9 9 9 9 13142000 20705000 71267 25876000 29898000 29833000 18889000 14159000 13236000 12338000 17666000 12236000 19340000 1326500 26092000 28391000 29796000 19561000 15132000 13870000 12125000 16905000 5 5 2 5 5 5 5 5 5 5 5 8731600 14894000 38155 18041000 8219500 6474000 6632900 9743000 8918000 8404400 11915000 8130000 13909000 713550 18009000 7841100 7382200 6881700 9701000 9078800 8263300 11401000 4 4 2 4 4 4 4 4 4 4 4 2155100000 1312900000 842150000 13466 1171 12469 71058;71059;71060;71061;71062;71063;71064 85887;85888;85889;85890;85891;85892;85893;85894;85895 85893 1568;1569 9 MGAGMGFGLER Unmodified 1124.5107 0.5106846 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 54.172 54.412 2 0.0094259 15612 20211116_3445_TMUAki_TMT10x_S_F6 63.419 32.701 90228000 153280000 1700200 157170000 95655000 89959000 78342000 100570000 90000000 96618000 115740000 84024000 143040000 9088600 159060000 91382000 96028000 80731000 101600000 91963000 94525000 110850000 3 3 2 3 3 3 3 3 3 3 3 14247000 20889000 238690 24463000 20820000 26453000 17563000 14598000 12406000 13716000 16304000 13267000 19505000 1495700 24734000 19896000 26560000 17826000 15414000 12985000 13432000 15607000 1 1 1 1 1 1 1 1 1 1 1 75981000 132390000 1461500 132710000 74834000 63506000 60778000 85970000 77594000 82902000 99435000 70756000 123530000 7592900 134330000 71486000 69469000 62905000 86183000 78978000 81093000 95245000 2 2 1 2 2 2 2 2 2 2 2 1311200000 352370000 958850000 13467 1171 12469 71065;71066;71067 85896 85896 1 MGAHYHCIICSATITR Oxidation (M) 1905.8648 0.86479221 2070 Q7Z2T5;Q7Z2T5-2 TRMT1L TRMT1-like protein yes no 0 0 1 0 By MS/MS By matching 1 0 2 1 1 33.353 33.358 4 0.0036731 7354 20211116_3428_TMUAki_TMT10x_P_F1 59.68 47.053 169230 252950 5093.7 310140 426890 410010 297860 220060 262790 223860 234170 157600 236240 22386 313840 406390 407260 307790 233450 267860 218480 226780 1 1 1 1 1 1 1 1 1 1 1 169230 252950 5093.7 310140 426890 410010 297860 220060 262790 223860 234170 157600 236240 22386 313840 406390 407260 307790 233450 267860 218480 226780 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 44311000 29110000 15200000 13468 2070 12470 71068;71069 85897 85897 2575 1 MGANNLER Unmodified 903.42325 0.4232498 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS 3 0 1 1 31.011 30.758 2 0.032382 9383 20211116_3441_TMUAki_TMT10x_S_F3 62.546 26.361 171480 290420 0 263190 177490 127050 192530 83868 84127 107520 200260 159650 270890 13311 268390 170500 136860 191150 88158 94449 104040 189590 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 171480 290420 0 263190 177490 127050 192530 83868 84127 107520 200260 159650 270890 13311 268390 170500 136860 191150 88158 94449 104040 189590 1 1 0 1 1 1 1 1 1 1 1 14752000 0 14752000 13469 1171 12471 71070 85898 85898 1 MGANSLER Unmodified 876.41235 0.41235077 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS 4 0 1 1 31.654 31.684 2 0.0103 7033 20211116_3431_TMUAki_TMT10x_P_F4 80.676 50.172 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13470 1171 12472 71071 85899 85899 1 MGAYHTIELEPNR Oxidation (M) 1545.7246 0.72457678 2645 Q9BRX2 PELO Protein pelota homolog yes yes 0 0 1 0 By MS/MS By matching 4.5 0.5 1 1 1 1 35.136 35.237 3 2.206E-05 8579 20211116_3431_TMUAki_TMT10x_P_F4 100.04 88.119 1509800 2504700 9260.6 2600400 3499400 3512300 1970200 1815700 2189300 1778600 2281600 1405700 2337500 145680 2659700 3316500 3483800 2085200 1930600 2220900 1738600 2198100 2 2 1 2 2 2 2 2 2 2 2 1509800 2504700 9260.6 2600400 3499400 3512300 1970200 1815700 2189300 1778600 2281600 1405700 2337500 145680 2659700 3316500 3483800 2085200 1930600 2220900 1738600 2198100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 60509000 52787000 7721600 13471 2645 12473 71072;71073 85900;85901 85900 2878 2 MGCEIVIATPGR Unmodified 1302.6424 0.64242706 2677 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 0 0 0 0 By MS/MS 6 0 1 1 51.109 51.251 2 0.081341 14316 20211116_3445_TMUAki_TMT10x_S_F6 53.013 34.398 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13472 2677 12474 71074 85902 85902 1 MGDVLSTHLDDARR Oxidation (M) 1600.7628 0.7627532 2566 Q96TA1 FAM129B Niban-like protein 1 yes yes 0 0 1 1 By MS/MS By MS/MS 3.83 2.41 1 1 2 1 1 3 3 83.529 83.522 2 0.030162 27498 20211116_3445_TMUAki_TMT10x_S_F6 46.462 18.72 3744700 5452500 7381.1 4455400 3909600 5386400 3695500 3786400 2995600 3604800 4507900 3486800 5084100 53995 4629600 3743800 5393900 3738000 3925100 3131800 3528100 4301800 6 6 2 6 6 6 6 6 6 6 6 3100800 4345000 0 3559500 3089900 4638000 2782600 3062700 2291700 2858700 3681600 2887100 4051400 0 3702900 2955000 4622900 2823400 3187400 2402200 2800300 3508500 3 3 0 3 3 3 3 3 3 3 3 643940 1107500 7381.1 895950 819730 748450 912830 723670 703930 746170 826300 599620 1032600 53995 926760 788780 771020 914590 737700 729610 727820 793310 3 3 2 3 3 3 3 3 3 3 3 4012300000 1718700000 2293700000 13473 2566 12475 71075;71076;71077;71078;71079;71080 85903;85904 85904 2797 2 MGEEVIPLR Oxidation (M) 1058.543 0.54303059 1893 Q4G0J3;Q4G0J3-3;Q4G0J3-2 LARP7 La-related protein 7 yes no 0 0 1 0 By MS/MS By MS/MS 3 0 2 1 1 41.941 41.81 2 0.076969 12511 20211116_3430_TMUAki_TMT10x_P_F3 55.112 30.777 1344100 2330100 9320.9 2686400 1739500 1668200 1370600 1675300 2040500 1656800 2081200 1251600 2175600 125660 2700200 1659200 1762400 1430300 1702500 2048000 1618800 2006400 2 2 2 2 2 2 2 2 2 2 2 516710 869130 4447.4 882380 1002700 1010200 618300 489160 587040 516970 670520 481150 811040 53790 901140 952020 1009500 646300 524470 601540 503760 644240 1 1 1 1 1 1 1 1 1 1 1 827390 1461000 4873.6 1804000 736780 658020 752270 1186200 1453500 1139800 1410600 770410 1364500 71869 1799000 707140 752910 783960 1178000 1446500 1115100 1362100 1 1 1 1 1 1 1 1 1 1 1 50411000 22051000 28360000 13474 1893 12476 71081;71082 85905 85905 2499 1 MGESDDSILR Oxidation (M) 1137.4972 0.49720261 1403 P63220 RPS21 40S ribosomal protein S21 yes yes 0 0 1 0 By MS/MS By MS/MS 1.86 0.639 2 4 1 3 4 32.31 32.301 2 3.7289E-08 7733 20211116_3428_TMUAki_TMT10x_P_F1 166.77 138.35 2160400 3591000 23797 4069000 5307800 3468100 2709100 2244800 2587100 1962000 3369000 2011500 3352600 227360 4108300 5024400 3542700 2880100 2335600 2665000 1927900 3225700 6 6 3 6 6 6 6 6 6 6 6 1387200 2245200 20888 2558000 4550300 2845300 1884800 1416100 1664200 1217600 2118300 1291700 2096200 176800 2591800 4297200 2848700 2044400 1506000 1718800 1197300 2029400 3 3 2 3 3 3 3 3 3 3 3 773170 1345800 2909.9 1511000 757550 622860 824310 828690 922900 744440 1250700 719790 1256400 50558 1516500 727230 693930 835690 829640 946210 730530 1196300 3 3 1 3 3 3 3 3 3 3 3 258320000 201200000 57119000 13475 1403 12477 71083;71084;71085;71086;71087;71088;71089 85906;85907;85908;85909;85910;85911 85906 1882 6 MGESDDSILR Unmodified 1121.5023 0.50228798 1403 P63220 RPS21 40S ribosomal protein S21 yes yes 0 0 0 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 3 2 41.975 41.91 2 5.7471E-09 12409 20211116_3429_TMUAki_TMT10x_P_F2 177.91 131.49 1948000 3005200 5049 3821700 6940200 3970600 2883500 1986800 1839600 1675200 2993200 1813800 2807200 226600 3843300 6552300 3991200 3104700 2110800 1958100 1648900 2851700 2 2 1 2 2 2 2 2 2 2 2 1948000 3005200 5049 3821700 6940200 3970600 2883500 1986800 1839600 1675200 2993200 1813800 2807200 226600 3843300 6552300 3991200 3104700 2110800 1958100 1648900 2851700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 175480000 141490000 33985000 13476 1403 12477 71090;71091;71092;71093;71094 85912;85913;85914;85915 85913 4 MGFDRENVYEELR Oxidation (M) 1672.7515 0.75151981 844 P28370-2;P28370 SMARCA1 Probable global transcription activator SNF2L1 yes no 0 0 1 1 By MS/MS By MS/MS 2.5 0.957 1 2 2 1 3 3 44.474 44.354 3 5.9292E-06 14833 20211116_3441_TMUAki_TMT10x_S_F3 103.46 90.264 4039300 6613100 7383.1 7335400 5622000 6395700 4515800 5643000 5331000 4977000 5797300 3760700 6173400 323980 7418200 5360700 6556600 4663600 5755500 5404200 4888300 5578000 4 4 1 4 4 4 4 4 4 4 4 2069100 3215700 7383.1 3623500 3858600 4731500 2811300 2922900 2611700 2509200 2893300 1926500 3002100 192040 3684300 3673200 4711100 2900200 3050700 2675600 2467700 2782300 2 2 1 2 2 2 2 2 2 2 2 1970100 3397400 0 3711900 1763400 1664300 1704400 2720100 2719300 2467800 2904000 1834200 3171300 131940 3733900 1687500 1845500 1763400 2704800 2728600 2420600 2795700 2 2 0 2 2 2 2 2 2 2 2 636970000 451240000 185730000 13477 844 12478 71095;71096;71097;71098;71099;71100 85916;85917;85918;85919;85920 85919 1013 5 MGFDRENVYEELR Unmodified 1656.7566 0.75660519 844 P28370-2;P28370 SMARCA1 Probable global transcription activator SNF2L1 yes no 0 0 0 1 By matching By MS/MS 3 0 2 1 1 51.53 51.287 3 2.8086E-06 17667 20211116_3441_TMUAki_TMT10x_S_F3 112.02 98.696 2422300 4002300 13078 4383400 2247900 1796900 1985100 2185200 1767200 2234500 2842200 2255500 3736000 210570 4406200 2149600 1998800 2020600 2203700 1845500 2180300 2708500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2422300 4002300 13078 4383400 2247900 1796900 1985100 2185200 1767200 2234500 2842200 2255500 3736000 210570 4406200 2149600 1998800 2020600 2203700 1845500 2180300 2708500 1 1 1 1 1 1 1 1 1 1 1 185890000 97239000 88650000 13478 844 12478 71101;71102 85921 85921 1 MGFNIGVR Oxidation (M) 908.45382 0.45382165 226 O43617;O43617-2 TRAPPC3 Trafficking protein particle complex subunit 3 yes no 0 0 1 0 By MS/MS 8 0 1 1 41.482 41.697 2 0.040455 10722 20211116_3436_TMUAki_TMT10x_P_F8 64.236 44.876 715620 1014300 8838 1194000 1369500 1566900 823480 941410 929460 758890 1004000 666380 947120 76724 1211000 1299900 1559200 867120 983270 943570 748690 966190 1 1 1 1 1 1 1 1 1 1 1 715620 1014300 8838 1194000 1369500 1566900 823480 941410 929460 758890 1004000 666380 947120 76724 1211000 1299900 1559200 867120 983270 943570 748690 966190 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 184470000 184470000 0 13479 226 12479 71103 85922 85922 178 1 MGFTEVTPVTGASLR Oxidation (M) 1580.7868 0.78684269 1242 P55265;P55265-5;P55265-4 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 1 0 By matching By MS/MS 6 0 3 1 2 52.171 52.288 2;3 3.9594E-20 14797 20211116_3445_TMUAki_TMT10x_S_F6 160.16 132.73 1887400 3245000 15230 3171000 1889900 1650600 1657700 2682500 2367100 2248300 2716500 1757400 3027700 170710 3217400 1807200 1798500 1715600 2662300 2389500 2213700 2609700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1887400 3245000 15230 3171000 1889900 1650600 1657700 2682500 2367100 2248300 2716500 1757400 3027700 170710 3217400 1807200 1798500 1715600 2662300 2389500 2213700 2609700 1 1 1 1 1 1 1 1 1 1 1 256500000 185010000 71488000 13480 1242 12480 71104;71105;71106 85923;85924 85924 1688 2 MGFTEVTPVTGASLRR Oxidation (M) 1736.888 0.88795372 1242 P55265;P55265-5;P55265-4 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 1 1 By MS/MS By MS/MS 4 3.29 2 1 2 2 3 42.914 42.931 3 3.692E-21 10682 20211116_3447_TMUAki_TMT10x_S_F8 161.09 139.84 3955100 6299500 24093 6950400 6797800 8690000 4661100 7389900 7360700 5642200 6399600 3682700 5880600 378950 7070600 6465100 8716300 4923200 7526800 7336000 5582500 6203200 6 6 3 6 6 6 6 6 6 6 6 2951500 4591100 24093 5132700 5823900 7809500 4012700 5421800 5288200 4155200 4679500 2748300 4286000 302730 5238000 5539800 7737000 4204400 5595100 5302400 4110400 4533000 4 4 3 4 4 4 4 4 4 4 4 1003500 1708400 0 1817700 973960 880530 648390 1968100 2072500 1487000 1720000 934330 1594500 76219 1832600 925270 979270 718790 1931700 2033600 1472100 1670200 2 2 0 2 2 2 2 2 2 2 2 1117600000 729960000 387620000 13481 1242 12481 71107;71108;71109;71110;71111 85925;85926;85927;85928;85929;85930 85930 1688 6 MGFTEVTPVTGASLRR Unmodified 1720.893 0.89303909 1242 P55265;P55265-5;P55265-4 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 50.167 49.971 3 6.5418E-29 15542 20211116_3429_TMUAki_TMT10x_P_F2 186.42 146.39 3400800 5278600 34436 5683200 4360600 4780500 3515500 4026700 3710100 3475400 4470800 3166700 4927000 327490 5755700 4162000 4908800 3616100 4115600 3792900 3416900 4289200 2 2 2 2 2 2 2 2 2 2 2 1697200 2517100 34007 2764800 2727600 3525100 2223700 2126900 2032800 1790300 2239900 1580500 2349700 186830 2814400 2604700 3512800 2276000 2223000 2083700 1762400 2154300 1 1 1 1 1 1 1 1 1 1 1 1703600 2761500 429.22 2918400 1633000 1255400 1291700 1899700 1677400 1685000 2230900 1586200 2577400 140650 2941300 1557300 1396000 1340100 1892600 1709200 1654500 2134900 1 1 1 1 1 1 1 1 1 1 1 799250000 535250000 263990000 13482 1242 12481 71112;71113 85931;85932 85931 2 MGGDIANR Unmodified 832.38614 0.38613602 3217 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 yes yes 0 0 0 0 By MS/MS 3 0 1 1 31.059 30.806 2 0.090323 9371 20211116_3441_TMUAki_TMT10x_S_F3 58.782 36.042 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13483 3217 12482 71114 85933 85933 1 MGGEEAEIR Oxidation (M) 1006.439 0.43895945 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 1 0 By MS/MS 1 0 1 1 27.654 27.654 2 0.0032744 5055 20211116_3428_TMUAki_TMT10x_P_F1 87.476 45.012 48267 91212 756.76 77358 76983 91237 69195 34819 34625 41265 55730 44947 85059 5109.1 80104 73665 90823 69524 38441 37486 40036 53108 1 1 1 1 1 1 1 1 1 1 1 48267 91212 756.76 77358 76983 91237 69195 34819 34625 41265 55730 44947 85059 5109.1 80104 73665 90823 69524 38441 37486 40036 53108 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6270400 6270400 0 13484 1546 12483 71115 85934 85934 2080 1 MGGGGAMNMGDPYGSGGQK 3 Oxidation (M) 1818.6971 0.69711776 777 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 3 0 By matching By MS/MS 4.5 0.5 1 1 1 1 31.049 31.138 3 3.7099E-05 5958 20211116_3444_TMUAki_TMT10x_S_F5 78.95 74.707 35249 62008 0 115200 24098 13886 31051 18018 19020 11053 65760 32820 58059 0 112250 23281 20488 30760 17902 21534 11082 61989 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35249 62008 0 115200 24098 13886 31051 18018 19020 11053 65760 32820 58059 0 112250 23281 20488 30760 17902 21534 11082 61989 2 2 0 2 2 2 2 2 2 2 2 15904000 13605000 2298400 13485 777 12484 71116;71117 85935;85936 85935 909;910;911 2 MGGGGAMNMGDPYGSGGQK 2 Oxidation (M) 1802.7022 0.70220313 777 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 2 0 By MS/MS 6 0 1 1 34.577 34.747 3 7.55E-05 7761 20211116_3445_TMUAki_TMT10x_S_F6 72.819 67.095 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13486 777 12484 71118 85937 85937 909;910;911 1 MGGGSIEVSVPR Oxidation (M) 1203.5918 0.59177169 2494 Q96I24;Q96I24-2 FUBP3 Far upstream element-binding protein 3 yes no 0 0 1 0 By MS/MS By MS/MS 4 0 3 1 2 36.834 36.908 2;3 0.0006466 9046 20211116_3442_TMUAki_TMT10x_S_F4 87.123 70.347 979190 1587400 10953 1759600 2358600 2389900 1423900 1596500 1745900 1334900 1598200 911810 1481800 110710 1792400 2238700 2377900 1503200 1655400 1756800 1314500 1546300 2 2 2 2 2 2 2 2 2 2 2 838130 1320200 10311 1483400 2192600 2236300 1269300 1396100 1555000 1157100 1389100 780460 1232500 98066 1513000 2079800 2212900 1344600 1454700 1563600 1139900 1345200 1 1 1 1 1 1 1 1 1 1 1 141060 267190 642.83 276240 166020 153560 154600 200370 190870 177790 209040 131350 249350 12644 279340 158940 165060 158540 200690 193230 174570 201090 1 1 1 1 1 1 1 1 1 1 1 285620000 273940000 11684000 13487 2494 12485 71119;71120;71121 85938;85939;85940 85939 2774 3 MGGMEGPFGGGMENMGR 4 Oxidation (M) 1777.6528 0.6528101 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 4 0 By MS/MS By MS/MS 2.86 1.46 2 1 1 2 1 3 4 33.048 33.022 3 0.0060936 7176 20211116_3428_TMUAki_TMT10x_P_F1 55.546 42.668 1071700 1883800 7528.2 2068700 2339000 2204700 1430600 1468800 1783600 1114800 1747400 997790 1758400 103560 2099400 2219700 2221100 1509500 1519900 1797800 1103300 1686800 12 12 6 12 12 12 12 12 12 12 12 727060 1267400 2701.8 1395900 1992400 1913900 1085900 978830 1215600 759570 1172300 676930 1183100 74011 1422700 1887400 1896800 1152800 1035800 1229500 750870 1132300 6 6 2 6 6 6 6 6 6 6 6 344600 616360 4826.4 672760 346580 290810 344730 489980 567980 355220 575040 320860 575340 29553 676630 332330 324290 356680 484090 568310 352470 554500 6 6 4 6 6 6 6 6 6 6 6 580390000 369070000 211320000 13488 1171 12486 71122;71123;71124;71125;71126;71127;71128 85941;85942;85943;85944;85945;85946;85947;85948;85949;85950;85951;85952 85941 1570;1571;1572;1573 12 MGGMEGPFGGGMENMGR 3 Oxidation (M) 1761.6579 0.65789548 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 3 0 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 37.081 37.163 3 0.0076945 10832 20211116_3430_TMUAki_TMT10x_P_F3 52.172 47.281 345730 597210 1087.9 703420 362570 309020 309780 342920 347730 309650 508510 321890 557660 27064 704200 346210 339890 318150 345950 357800 303790 485570 2 2 1 2 2 2 2 2 2 2 2 54698 75758 1087.9 93372 98028 90246 67909 39879 42277 37065 60025 50938 70756 6155.6 93964 93303 90997 69664 43004 44761 36316 57354 1 1 1 1 1 1 1 1 1 1 1 291030 521450 0 610040 264550 218770 241870 303040 305460 272580 448490 270960 486900 20909 610240 252900 248900 248490 302940 313040 267470 428210 1 1 0 1 1 1 1 1 1 1 1 169150000 26524000 142620000 13489 1171 12486 71129;71130;71131 85953;85954;85955 85954 1570;1571;1572;1573 3 MGGMEGPFGGGMENMGR 2 Oxidation (M) 1745.663 0.66298086 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 2 0 By matching By MS/MS 3.5 0.5 1 1 1 1 45.908 46.008 3 0.00031195 13170 20211116_3442_TMUAki_TMT10x_S_F4 71.286 65.045 981620 1574200 9955 1934800 830760 869470 838470 1136300 1169600 988700 1299900 914060 1470200 88548 1932400 797370 957460 860350 1137400 1180000 971700 1249900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 981620 1574200 9955 1934800 830760 869470 838470 1136300 1169600 988700 1299900 914060 1470200 88548 1932400 797370 957460 860350 1137400 1180000 971700 1249900 1 1 1 1 1 1 1 1 1 1 1 127320000 50283000 77040000 13490 1171 12486 71132;71133 85956 85956 1570;1571;1572;1573 1 MGHAGAIIAGGK Oxidation (M) 1097.5652 0.56516301 1202 P53597 SUCLG1 Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial yes yes 0 0 1 0 By MS/MS 1 0 1 1 31.374 31.423 3 0.025951 8511 20211116_3439_TMUAki_TMT10x_S_F1 54.259 43.095 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13491 1202 12487 71134 85957 85957 1613 1 MGIYVGAK Oxidation (M) 853.43677 0.4367746 1487 Q01813 PFKP ATP-dependent 6-phosphofructokinase, platelet type no no 0 0 1 0 By MS/MS 7 0 1 1 39.049 39.488 2 0.064541 11152 20211116_3435_TMUAki_TMT10x_P_F7 64.803 23.883 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13492 1487 12488 71135 85958 85958 2018 1 MGLAISLVATEK Unmodified 1231.6846 0.68460945 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 By MS/MS By MS/MS 2.75 3.03 3 1 2 2 74.652 74.56 2;3 2.2359E-22 24054 20211116_3436_TMUAki_TMT10x_P_F8 215.89 181.17 10708000 17285000 26789 18067000 13066000 8621900 11945000 7027700 5793700 6541300 11091000 9969400 16132000 874880 18235000 12497000 9330200 11985000 7211100 6351200 6408700 10535000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10708000 17285000 26789 18067000 13066000 8621900 11945000 7027700 5793700 6541300 11091000 9969400 16132000 874880 18235000 12497000 9330200 11985000 7211100 6351200 6408700 10535000 3 3 2 3 3 3 3 3 3 3 3 328670000 0 328670000 13493 2334 12489 71136;71137;71138;71139 85959;85960;85961;85962;85963 85960 5 MGLAISLVATEK Oxidation (M) 1247.6795 0.67952407 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 1 0 By MS/MS By MS/MS 5.93 1.65 1 4 4 4 2 6 9 61.771 61.949 2;3 7.1918E-08 20123 20211116_3435_TMUAki_TMT10x_P_F7 108.53 76.59 76489000 130170000 148700 115470000 93482000 112050000 83907000 89508000 80849000 80313000 96160000 71212000 121410000 5674100 118790000 89335000 113850000 85516000 91868000 82927000 78817000 92288000 12 12 3 12 12 12 12 12 12 12 12 31020000 54013000 48481 45378000 35326000 64496000 33617000 36306000 33376000 31402000 37968000 28880000 50368000 2287700 47189000 33807000 63892000 34181000 38190000 34128000 30871000 36484000 5 5 1 5 5 5 5 5 5 5 5 45469000 76157000 100220 70095000 58156000 47550000 50290000 53202000 47473000 48911000 58193000 42332000 71040000 3386400 71599000 55529000 49958000 51336000 53678000 48800000 47946000 55804000 7 7 2 7 7 7 7 7 7 7 7 9176000000 4309800000 4866100000 13494 2334 12489 71140;71141;71142;71143;71144;71145;71146;71147;71148;71149;71150;71151;71152;71153;71154 85964;85965;85966;85967;85968;85969;85970;85971;85972;85973;85974;85975;85976;85977 85969 2681 14 MGLAMGGGGGASFDR 2 Oxidation (M) 1414.5969 0.59693343 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 2 0 By MS/MS By MS/MS 5 1.32 1 1 3 5 4 2 10 6 34.429 34.521 2;3 1.9517E-06 8519 20211116_3433_TMUAki_TMT10x_P_F5 103.63 86.961 11611000 17518000 203350 20719000 37671000 28250000 16397000 16194000 19001000 13417000 18295000 10812000 16359000 1464700 21023000 35595000 28044000 17825000 16990000 19191000 13218000 17670000 18 18 9 18 18 18 18 18 18 18 18 10647000 15889000 191590 18824000 36747000 27523000 15584000 15101000 17786000 12490000 16848000 9915000 14837000 1388900 19126000 34712000 27223000 16982000 15903000 17965000 12306000 16281000 11 11 6 11 11 11 11 11 11 11 11 963700 1629100 11757 1895000 923990 727110 813310 1092400 1214800 926930 1447400 897270 1521100 75845 1897000 882960 820980 843200 1087300 1226600 912100 1389000 7 7 3 7 7 7 7 7 7 7 7 1133900000 934460000 199460000 13495 1171 12490 71155;71156;71157;71158;71159;71160;71161;71162;71163;71164;71165;71166;71167;71168;71169;71170 85978;85979;85980;85981;85982;85983;85984;85985;85986;85987;85988;85989;85990;85991;85992;85993;85994;85995 85983 1574;1575 18 MGLAMGGGGGASFDR Oxidation (M) 1398.602 0.6020188 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 1 0 By MS/MS By MS/MS 5.62 1 2 4 4 3 5 8 41.8 42.009 2;3 1.3885E-23 11438 20211116_3433_TMUAki_TMT10x_P_F5 191.04 161.87 13262000 20837000 65104 25913000 25955000 21319000 16734000 13266000 12386000 11696000 18105000 12347000 19462000 1235300 26009000 24653000 21821000 17322000 13847000 12994000 11488000 17288000 15 15 3 15 15 15 15 15 15 15 15 8639800 13544000 55186 16707000 21995000 18546000 13318000 8745700 8222700 7897500 11784000 8044400 12650000 896410 16848000 20871000 18559000 13805000 9361200 8714600 7748000 11257000 8 8 2 8 8 8 8 8 8 8 8 4621700 7293100 9917.9 9206000 3960500 2773500 3416000 4520300 4163000 3798900 6321500 4303000 6812400 338930 9160300 3781500 3261500 3516600 4486200 4279000 3739900 6031300 7 7 1 7 7 7 7 7 7 7 7 1541500000 1025900000 515610000 13496 1171 12490 71171;71172;71173;71174;71175;71176;71177;71178;71179;71180;71181;71182;71183 85996;85997;85998;85999;86000;86001;86002;86003;86004;86005;86006;86007;86008;86009;86010;86011;86012;86013 85997 1574;1575 18 MGLAMGGGGGASFDR Unmodified 1382.6071 0.60710418 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS By MS/MS 7 0.707 1 2 1 2 2 51.073 51.495 2 3.2098E-61 15925 20211116_3435_TMUAki_TMT10x_P_F7 311.77 263.35 18053000 26866000 0 34220000 27111000 18291000 19779000 8402700 6359400 8843200 19366000 16806000 25096000 1283400 34152000 25789000 19394000 20030000 9055500 7518300 8618600 18279000 3 3 0 3 3 3 3 3 3 3 3 11465000 16302000 0 21499000 20777000 15163000 15669000 5476000 3691500 5642000 11495000 10673000 15231000 818080 21471000 19776000 15620000 15790000 6061500 4556500 5503500 10847000 2 2 0 2 2 2 2 2 2 2 2 6587900 10564000 0 12720000 6334300 3127700 4109500 2926600 2667900 3201200 7870600 6133400 9865300 465360 12681000 6012700 3773500 4240200 2993900 2961800 3115100 7431400 1 1 0 1 1 1 1 1 1 1 1 1698800000 1152900000 545830000 13497 1171 12490 71184;71185;71186;71187 86014;86015;86016;86017 86014 4 MGLCKCPK Acetyl (Protein N-term);2 Carbamidomethyl (C) 1148.5141 0.51405542 406 O95159 ZFPL1 Zinc finger protein-like 1 yes yes 1 2 0 1 By MS/MS 3 0 1 1 107.76 107.74 2 0.056522 38473 20211116_3430_TMUAki_TMT10x_P_F3 46.566 27.951 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13498 406 12491 71188 86018 86018 5;6 1 MGLIQTADQLR Oxidation (M) 1260.6496 0.64962092 713 P18031 PTPN1 Tyrosine-protein phosphatase non-receptor type 1 yes yes 0 0 1 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 47.334 47.479 2 6.2299E-12 12500 20211116_3444_TMUAki_TMT10x_S_F5 178.94 141.95 7067800 12130000 53384 13149000 13255000 14532000 8512200 11055000 11759000 9697300 10854000 6581200 11322000 722370 13363000 12593000 14641000 8982800 11375000 11789000 9526800 10498000 4 4 4 4 4 4 4 4 4 4 4 5074800 8452100 35201 9413700 11424000 12801000 7131800 7570800 8114900 6640300 7578300 4725400 7890300 542470 9586300 10848000 12715000 7488900 7933600 8193500 6523600 7327100 3 3 3 3 3 3 3 3 3 3 3 1992900 3677700 18182 3735400 1831100 1731000 1380400 3484500 3644400 3057000 3275200 1855800 3431900 179910 3776700 1745500 1926500 1493900 3441500 3595400 3003200 3170900 1 1 1 1 1 1 1 1 1 1 1 639610000 470440000 169170000 13499 713 12492 71189;71190;71191;71192 86019;86020;86021;86022;86023 86022 817 5 MGLSMER Unmodified 822.37279 0.37279414 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS 4 0 1 1 36.623 36.756 2 0.01871 9482 20211116_3442_TMUAki_TMT10x_S_F4 89.369 40.609 322570 487240 5750.8 625210 304320 212270 298900 181180 153910 199230 371360 300380 455160 31847 621900 292010 241020 298980 186320 170640 193840 351510 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 322570 487240 5750.8 625210 304320 212270 298900 181180 153910 199230 371360 300380 455160 31847 621900 292010 241020 298980 186320 170640 193840 351510 1 1 1 1 1 1 1 1 1 1 1 11059000 0 11059000 13500 1171 12493 71193 86024 86024 1 MGLVMDR 2 Oxidation (M) 852.38336 0.38335882 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 2 0 By MS/MS 2 0 1 1 29.771 29.541 2 0.072665 7348 20211116_3429_TMUAki_TMT10x_P_F2 44.611 33.242 266760 429030 263.12 394180 442090 527390 471550 247360 272260 245800 320200 248380 400200 24817 406580 424660 522760 470600 265590 287400 240120 307400 1 1 1 1 1 1 1 1 1 1 1 266760 429030 263.12 394180 442090 527390 471550 247360 272260 245800 320200 248380 400200 24817 406580 424660 522760 470600 265590 287400 240120 307400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17865000 17865000 0 13501 1171 12494 71194 86025 86025 1576;1577 1 MGMGNNYSGGYGTPDGLGGYGR 2 Oxidation (M) 2211.895 0.89496594 893 P31942;P31942-2;P31942-3;P31942-4 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes no 0 0 2 0 By MS/MS 6 0 1 1 45.033 45.108 3 0.031039 11468 20211116_3434_TMUAki_TMT10x_P_F6 43.09 39.371 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13502 893 12495 71195 86026 86026 1089;1090 1 MGNTPDSASDNLGFR Oxidation (M) 1596.6838 0.68383418 2223 Q8NBJ7;Q8NBJ7-5;Q8NBJ7-2 SUMF2 Sulfatase-modifying factor 2 yes no 0 0 1 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 38.386 38.552 2 2.6057E-09 10228 20211116_3442_TMUAki_TMT10x_S_F4 132.5 112.51 80171 132560 0 207980 62300 63298 65466 118340 161860 95794 162680 74643 123980 5809.5 204690 59777 74645 69223 116860 160480 94486 156900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 80171 132560 0 207980 62300 63298 65466 118340 161860 95794 162680 74643 123980 5809.5 204690 59777 74645 69223 116860 160480 94486 156900 1 1 0 1 1 1 1 1 1 1 1 9233400 0 9233400 13503 2223 12496 71196;71197 86027;86028 86028 2634 2 MGPAIER Unmodified 772.39016 0.39015876 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 32.813 32.668 2 0.0058478 7447 20211116_3431_TMUAki_TMT10x_P_F4 106.42 63.349 3833500 5976900 0 6365300 5853400 5112200 4732400 2422600 2257700 2442100 4457300 3569100 5578600 309520 6447500 5581900 5224800 4782300 2599500 2483200 2384300 4231700 3 3 0 3 3 3 3 3 3 3 3 2680700 4092700 0 4406200 4639900 4247500 3405100 1711000 1621400 1709200 3107500 2495800 3820100 224080 4470500 4416200 4279900 3463300 1867600 1780300 1669300 2951700 2 2 0 2 2 2 2 2 2 2 2 1152800 1884200 0 1959100 1213500 864670 1327300 711590 636310 732930 1349700 1073300 1758500 85443 1977000 1165700 944930 1319000 731860 702890 714940 1279900 1 1 0 1 1 1 1 1 1 1 1 181500000 119480000 62018000 13504 1171 12497 71198;71199;71200 86029;86030;86031 86030 3 MGPAMGPALGAGIER 2 Oxidation (M) 1458.6959 0.69591919 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 2 0 By MS/MS By MS/MS 5.21 1.35 1 2 4 5 8 4 10 14 38.623 38.762 2;3 1.5004E-06 9041 20211116_3444_TMUAki_TMT10x_S_F5 107.79 89.181 8614300 13650000 130930 15537000 14362000 14980000 10121000 13297000 14954000 10976000 13318000 8021200 12744000 847460 15708000 13668000 15257000 10637000 13535000 14944000 10815000 12898000 23 23 11 23 23 23 23 23 23 23 23 4878400 7383000 85462 8401000 10681000 11674000 6656100 7254400 8200300 5923600 7379000 4542600 6893000 526900 8547500 10143000 11592000 7009800 7559000 8245700 5840200 7143700 9 9 4 9 9 9 9 9 9 9 9 3735900 6266600 45465 7135600 3681400 3306000 3464400 6042200 6753700 5052300 5938800 3478600 5850700 320570 7160900 3525200 3665700 3627300 5975500 6697900 4975100 5754200 14 14 7 14 14 14 14 14 14 14 14 5090300000 3493800000 1596500000 13505 1171 12498 71201;71202;71203;71204;71205;71206;71207;71208;71209;71210;71211;71212;71213;71214;71215;71216;71217;71218;71219;71220;71221;71222;71223;71224 86032;86033;86034;86035;86036;86037;86038;86039;86040;86041;86042;86043;86044;86045;86046;86047;86048;86049;86050;86051;86052;86053;86054;86055;86056;86057;86058;86059 86049 1578;1579 28 MGPAMGPALGAGIER Oxidation (M) 1442.701 0.70100457 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 1 0 By MS/MS By MS/MS 5.56 1.06 3 5 4 4 8 8 46.296 46.537 2;3 4.2266E-20 12309 20211116_3445_TMUAki_TMT10x_S_F6 179.08 161.84 38726000 62163000 178110 67196000 58940000 64958000 47294000 42164000 40293000 39965000 50911000 36055000 58023000 3210900 68162000 56203000 65801000 48365000 43954000 41674000 39122000 48784000 17 17 4 17 17 17 17 17 17 17 17 25656000 41079000 174520 43771000 45909000 54538000 34866000 28640000 27472000 26793000 33324000 23888000 38341000 2295500 44624000 43734000 54314000 35714000 30371000 28479000 26244000 31965000 10 10 3 10 10 10 10 10 10 10 10 13069000 21084000 3589.6 23425000 13032000 10420000 12428000 13525000 12821000 13171000 17588000 12167000 19682000 915330 23538000 12469000 11487000 12650000 13584000 13195000 12878000 16819000 7 7 1 7 7 7 7 7 7 7 7 4628800000 3194000000 1434800000 13506 1171 12498 71225;71226;71227;71228;71229;71230;71231;71232;71233;71234;71235;71236;71237;71238;71239;71240 86060;86061;86062;86063;86064;86065;86066;86067;86068;86069;86070;86071;86072;86073;86074;86075;86076;86077;86078;86079 86076 1578;1579 20 MGPAMGPALGAGIER Unmodified 1426.7061 0.70608995 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS By MS/MS 7 0 3 1 2 54.221 54.742 2;3 1.146E-09 17737 20211116_3446_TMUAki_TMT10x_S_F7 117.8 93.647 4334900 6458500 0 8853200 3697200 3338000 4237800 5219500 6305100 4909800 6601000 4036200 6035400 0 8780100 3558600 3783000 4334300 5202600 6334400 4808000 6358600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4334900 6458500 0 8853200 3697200 3338000 4237800 5219500 6305100 4909800 6601000 4036200 6035400 0 8780100 3558600 3783000 4334300 5202600 6334400 4808000 6358600 1 1 0 1 1 1 1 1 1 1 1 615540000 0 615540000 13507 1171 12498 71241;71242;71243 86080;86081;86082 86082 3 MGPGAASGGERPNLK Oxidation (M) 1456.7093 0.70926107 2781 Q9H0U4 RAB1B Ras-related protein Rab-1B yes yes 0 0 1 1 By MS/MS 5 0 1 1 30.724 30.66 3 9.8906E-05 6962 20211116_3433_TMUAki_TMT10x_P_F5 87.718 71.828 768790 1352300 16058 1284900 2018000 1614800 970650 803170 1004200 786280 1102000 715940 1261600 96199 1320500 1909600 1606500 1040400 857070 1023600 768620 1060000 2 2 2 2 2 2 2 2 2 2 2 768790 1352300 16058 1284900 2018000 1614800 970650 803170 1004200 786280 1102000 715940 1261600 96199 1320500 1909600 1606500 1040400 857070 1023600 768620 1060000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 75026000 75026000 0 13508 2781 12499 71244 86083;86084 86083 2946 2 MGPGIDR Unmodified 744.35886 0.35885863 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 32.07 31.825 2 0.03122 7124 20211116_3431_TMUAki_TMT10x_P_F4 75.311 50.312 1047900 1637100 0 1784300 1066200 692760 1215700 543830 660830 636700 1223800 975600 1528100 76219 1793500 1025400 769720 1208100 563220 716540 618010 1163100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1047900 1637100 0 1784300 1066200 692760 1215700 543830 660830 636700 1223800 975600 1528100 76219 1793500 1025400 769720 1208100 563220 716540 618010 1163100 1 1 0 1 1 1 1 1 1 1 1 58792000 0 58792000 13509 1171 12500 71245;71246 86085;86086 86085 2 MGPGIDR Oxidation (M) 760.35377 0.35377325 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 1 0 By MS/MS 3 0 1 1 27.584 27.3 2 0.066594 8011 20211116_3441_TMUAki_TMT10x_S_F3 67.344 52.68 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13510 1171 12500 71247 86087 86087 1580 1 MGPGIGAILER Oxidation (M) 1128.5961 0.59612879 3065 Q9P2K5;Q9P2K5-2;Q9P2K5-3 MYEF2 Myelin expression factor 2 yes no 0 0 1 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 51.397 51.551 2 3.7953E-05 15219 20211116_3433_TMUAki_TMT10x_P_F5 107.08 69.351 14457000 24654000 207570 22385000 20115000 24543000 15509000 23496000 23942000 20633000 20874000 13461000 22996000 1273800 23029000 19171000 24846000 16233000 23857000 23879000 20269000 20232000 4 4 2 4 4 4 4 4 4 4 4 7137500 11967000 137120 11134000 12378000 17537000 9385300 11411000 11511000 9883200 10130000 6645900 11163000 679770 11513000 11794000 17333000 9742200 11865000 11569000 9715400 9814900 2 2 1 2 2 2 2 2 2 2 2 7319100 12687000 70447 11251000 7736700 7005600 6123800 12085000 12430000 10749000 10744000 6814700 11833000 594010 11516000 7376500 7512800 6491200 11991000 12310000 10553000 10417000 2 2 1 2 2 2 2 2 2 2 2 1896900000 823670000 1073200000 13511 3065 12501 71248;71249;71250;71251 86088;86089;86090;86091 86088 3116 4 MGPGIGAILER Unmodified 1112.6012 0.60121417 3065 Q9P2K5;Q9P2K5-2;Q9P2K5-3 MYEF2 Myelin expression factor 2 yes no 0 0 0 0 By MS/MS By MS/MS 6.8 0.748 2 2 1 2 3 53.407 53.705 2 0.00029872 19412 20211116_3435_TMUAki_TMT10x_P_F7 94.909 63.605 37436000 61569000 92194 55227000 48204000 65444000 47285000 49257000 43660000 46033000 49427000 34855000 57427000 3121100 56941000 46188000 65676000 47899000 50801000 44780000 45091000 47502000 6 6 4 6 6 6 6 6 6 6 6 28367000 45125000 13796 40559000 36724000 55461000 36724000 33529000 30188000 32302000 35680000 26411000 42089000 2262400 41922000 35199000 55087000 37048000 35160000 31192000 31598000 34249000 3 3 1 3 3 3 3 3 3 3 3 9069000 16444000 78397 14668000 11480000 9983300 10561000 15728000 13472000 13731000 13747000 8444700 15337000 858710 15019000 10989000 10588000 10851000 15642000 13588000 13493000 13253000 3 3 3 3 3 3 3 3 3 3 3 2591300000 1513100000 1078200000 13512 3065 12501 71252;71253;71254;71255;71256 86092;86093;86094;86095;86096 86094 5 MGPLGLDHMASSIER 2 Oxidation (M) 1644.76 0.75997601 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 2 0 By MS/MS By MS/MS 4.45 1.92 1 1 2 1 2 2 2 6 5 36.507 36.561 3 1.4583E-06 8050 20211116_3444_TMUAki_TMT10x_S_F5 105.76 96.758 4765000 7454700 45915 8679400 8838500 10966000 5578400 8667900 10611000 7828000 7459700 4436900 6960600 274990 8802100 8394000 10979000 5984600 8903800 10463000 7679800 7293700 10 10 5 10 10 10 10 10 10 10 10 3331200 5071400 34191 6100500 7436900 9625000 4360700 6347000 7723400 5638900 5019900 3101900 4736000 158190 6203500 7054800 9514200 4688100 6597500 7614200 5536400 4926200 5 5 3 5 5 5 5 5 5 5 5 1433800 2383300 11724 2578800 1401600 1341100 1217700 2320900 2887900 2189100 2439800 1335000 2224600 116800 2598500 1339200 1464600 1296500 2306300 2849000 2143400 2367400 5 5 2 5 5 5 5 5 5 5 5 1974700000 1598900000 375810000 13513 1171 12502 71257;71258;71259;71260;71261;71262;71263;71264;71265;71266;71267 86097;86098;86099;86100;86101;86102;86103;86104;86105;86106;86107 86104 1581;1582 11 MGPLGLDHMASSIER Oxidation (M) 1628.7651 0.76506139 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 1 0 By MS/MS By MS/MS 5.2 1.28 1 4 4 4 1 1 8 7 45.067 45.221 3 1.4439E-06 13743 20211116_3433_TMUAki_TMT10x_P_F5 103.32 86.381 36165000 59913000 492090 71107000 55850000 59033000 39260000 44115000 42716000 40651000 50610000 33676000 55947000 3537500 71570000 53151000 60549000 40798000 45503000 43585000 39845000 48577000 18 18 13 18 18 18 18 18 18 18 18 18811000 29807000 342930 35466000 40813000 44901000 25731000 22133000 21742000 20730000 25416000 17517000 27834000 2090400 35923000 38769000 44649000 26766000 23611000 22424000 20304000 24405000 9 9 7 9 9 9 9 9 9 9 9 17354000 30106000 149160 35641000 15036000 14132000 13529000 21982000 20973000 19921000 25194000 16159000 28113000 1447100 35647000 14382000 15900000 14032000 21892000 21161000 19541000 24173000 9 9 6 9 9 9 9 9 9 9 9 6192400000 3949700000 2242700000 13514 1171 12502 71268;71269;71270;71271;71272;71273;71274;71275;71276;71277;71278;71279;71280;71281;71282 86108;86109;86110;86111;86112;86113;86114;86115;86116;86117;86118;86119;86120;86121;86122;86123;86124;86125;86126 86113 1581;1582 19 MGPLGLDHMASSIER Unmodified 1612.7701 0.77014677 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS By MS/MS 5.57 0.728 4 2 1 4 3 54.852 55.151 3 1.0265E-33 15520 20211116_3434_TMUAki_TMT10x_P_F6 226.06 208.25 16333000 25525000 0 29274000 19807000 22316000 18312000 10298000 9742500 11125000 17131000 15207000 23832000 817290 29496000 18948000 22893000 18388000 11102000 10548000 10831000 16297000 4 4 0 4 4 4 4 4 4 4 4 13098000 19562000 0 22851000 16046000 19642000 15091000 8004200 7641700 8708500 13174000 12195000 18266000 566360 23031000 15357000 19947000 15127000 8746600 8296400 8476200 12537000 3 3 0 3 3 3 3 3 3 3 3 3235700 5963500 0 6423800 3760900 2673500 3221100 2294200 2100800 2416800 3956900 3012600 5566300 250930 6464700 3591000 2946400 3260800 2355400 2252100 2355300 3759600 1 1 0 1 1 1 1 1 1 1 1 2108400000 1273700000 834690000 13515 1171 12502 71283;71284;71285;71286;71287;71288;71289 86127;86128;86129;86130;86131;86132;86133;86134 86129 8 MGPLINRPHLER Unmodified 1431.7769 0.77688712 1088 P49189;P49189-2;P49189-3 ALDH9A1 4-trimethylaminobutyraldehyde dehydrogenase yes no 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 35.963 35.848 4 0.0024034 9811 20211116_3429_TMUAki_TMT10x_P_F2 73.082 50.884 1294200 1947400 8892.7 2063100 2306500 2321200 1558500 1134700 1271800 1201400 1534700 1205100 1817600 129760 2100400 2193300 2322100 1611100 1215600 1315700 1170600 1472300 2 2 2 2 2 2 2 2 2 2 2 1294200 1947400 8892.7 2063100 2306500 2321200 1558500 1134700 1271800 1201400 1534700 1205100 1817600 129760 2100400 2193300 2322100 1611100 1215600 1315700 1170600 1472300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 94700000 94700000 0 13516 1088 12503 71290;71291 86135;86136 86136 2 MGPNIYELR Oxidation (M) 1107.5383 0.53827956 2618 Q9BPW8 NIPSNAP1 Protein NipSnap homolog 1 yes yes 0 0 1 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 43.831 43.968 2 4.5654E-05 11998 20211116_3431_TMUAki_TMT10x_P_F4 106.68 78.465 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13517 2618 12504 71292;71293;71294;71295 86137;86138;86139;86140 86137 2868 4 MGPNIYELR Unmodified 1091.5434 0.54336494 2618 Q9BPW8 NIPSNAP1 Protein NipSnap homolog 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 51.684 51.801 2 0.0014899 14533 20211116_3445_TMUAki_TMT10x_S_F6 97.431 61.035 12487000 19991000 84223 25137000 19855000 19115000 14208000 14343000 12689000 12311000 16617000 11627000 18673000 1216900 25191000 18901000 19737000 14660000 14763000 13115000 12108000 15908000 2 2 2 2 2 2 2 2 2 2 2 6278000 9809900 16555 13137000 13985000 14529000 9330900 7792100 6943400 6387400 8798000 5845600 9166100 643860 13188000 13294000 14564000 9634200 8220400 7234000 6296100 8429700 1 1 1 1 1 1 1 1 1 1 1 6209000 10181000 67668 12000000 5869800 4586200 4877500 6550500 5745900 5924000 7819200 5781700 9506600 573080 12003000 5607400 5173600 5026200 6542200 5881100 5811500 7478700 1 1 1 1 1 1 1 1 1 1 1 499360000 249980000 249390000 13518 2618 12504 71296;71297 86141;86142 86142 2 MGPPVGGHR Unmodified 906.4494 0.44940497 677 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 0 By MS/MS 5 0 1 1 27.463 27.391 3 0.036603 5648 20211116_3433_TMUAki_TMT10x_P_F5 45.7 33.931 225060 380180 4818.2 311780 310780 513130 294260 369140 287910 278570 321060 209580 354490 23078 325910 297780 507090 299150 379870 294350 275800 308690 2 2 1 2 2 2 2 2 2 2 2 225060 380180 4818.2 311780 310780 513130 294260 369140 287910 278570 321060 209580 354490 23078 325910 297780 507090 299150 379870 294350 275800 308690 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9821400 9821400 0 13519 677 12505 71298 86143;86144 86143 2 MGPSYCLPPTFPK Oxidation (M) 1509.6996 0.69960758 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 59.494 59.347 3 0.00085813 17806 20211116_3428_TMUAki_TMT10x_P_F1 75.479 61.816 4927900 7987700 103260 8142900 6247200 9101100 5597500 8095200 8014500 7173900 6983800 4589100 7454000 523270 8310500 5980000 9189900 5786500 8253800 8011000 7044400 6768900 2 2 2 2 2 2 2 2 2 2 2 2570900 4072500 50363 4132300 3979500 6597300 3321400 4363900 4318300 3707200 3353900 2394100 3800300 279810 4248300 3802200 6518700 3434300 4529900 4315300 3647700 3265300 1 1 1 1 1 1 1 1 1 1 1 2357000 3915300 52900 4010500 2267700 2503800 2276100 3731300 3696200 3466700 3629900 2195000 3653700 243460 4062100 2177800 2671200 2352200 3723900 3695700 3396600 3503700 1 1 1 1 1 1 1 1 1 1 1 452700000 315230000 137470000 13520 157 12506 71299;71300 86145;86146 86145 125 2 MGPVMDR Unmodified 804.36223 0.36222945 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS 4 0 1 1 34.902 34.926 2 0.1084 8344 20211116_3431_TMUAki_TMT10x_P_F4 57.471 23.383 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13521 1171 12507 71301 86147 86147 1 MGQAVPAPTGAPPGGQPDYSAAWAEYYR Unmodified 2907.3286 0.32862772 2408;2407 Q96AE4-2;Q96AE4 FUBP1 Far upstream element-binding protein 1 no no 0 0 0 0 By MS/MS 8 0 1 1 72.013 71.841 3 0.0041864 22530 20211116_3447_TMUAki_TMT10x_S_F8 48.422 35.62 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13522 2408;2407 12508 71302 86148 86148 1 MGQLGLGNQTDAVPSPAQIMYNGQPITK Oxidation (M) 2944.4423 0.44227727 3056 Q9P258 RCC2 Protein RCC2 yes yes 0 0 1 0 By MS/MS By MS/MS 8 0 2 1 1 73.206 73.143 4 2.4448E-06 23579 20211116_3436_TMUAki_TMT10x_P_F8 77.169 64.973 6769400 12058000 142610 9591000 8125100 10530000 8893500 5853900 5126400 6517000 8938300 6303800 11243000 675740 9972700 7816200 10565000 8864300 6207700 5515300 6337500 8504500 3 3 2 3 3 3 3 3 3 3 3 4509600 7892900 100100 6107100 4942400 7929500 5763300 4144400 3720300 4333300 5848100 4199300 7358300 435840 6383600 4763300 7880500 5739800 4410400 3949700 4224300 5575600 2 2 1 2 2 2 2 2 2 2 2 2259800 4165500 42507 3483900 3182700 2600900 3130200 1709500 1406100 2183700 3090200 2104500 3884300 239900 3589000 3052900 2684100 3124500 1797300 1565700 2113200 2928900 1 1 1 1 1 1 1 1 1 1 1 2033700000 1159900000 873790000 13523 3056 12509 71303;71304 86149;86150;86151 86149 3103 3 MGQMAMGGAMGINNR 3 Oxidation (M) 1585.6469 0.64693686 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 3 0 By MS/MS By MS/MS 3.11 2.88 5 1 1 2 4 5 31.182 31.263 3 1.1586E-06 6565 20211116_3433_TMUAki_TMT10x_P_F5 106.58 101.09 630440 1110400 10068 1136900 859280 912730 758650 655130 737030 650220 874710 587030 1036200 57848 1154600 821580 937870 774120 678940 755640 635240 839540 8 8 2 8 8 8 8 8 8 8 8 225030 369640 3149.2 405730 462000 465550 279130 234190 287570 224800 311690 209540 345050 23649 412260 438490 465380 292950 249510 293040 219940 299930 4 4 1 4 4 4 4 4 4 4 4 405410 740730 6919 731130 397280 447180 479520 420940 449460 425430 563020 377480 691140 34199 742310 383080 472490 481170 429440 462600 415310 539610 4 4 1 4 4 4 4 4 4 4 4 178910000 116900000 62017000 13524 1779 12510 71305;71306;71307;71308;71309;71310;71311;71312;71313 86152;86153;86154;86155;86156;86157;86158;86159 86154 2391;2392;2393;2394 8 MGQMAMGGAMGINNR 4 Oxidation (M) 1601.6419 0.64185148 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 4 0 By MS/MS By MS/MS 3.33 1.7 1 1 1 2 1 27.142 27.165 3 0.00081504 5415 20211116_3433_TMUAki_TMT10x_P_F5 69.456 64.14 60928 94441 0 85297 103230 102010 75221 52353 60106 45869 86903 56727 88089 3247.8 87913 98250 101780 77297 55541 62760 45065 83003 3 3 0 3 3 3 3 3 3 3 3 51046 79772 0 70026 96105 95320 65160 45635 55312 39246 76164 47526 74399 3247.8 72505 91347 94429 67408 48714 57442 38593 72827 2 2 0 2 2 2 2 2 2 2 2 9881.9 14669 0 15271 7122.8 6692.3 10061 6718.6 4793.5 6622.8 10739 9201 13690 0 15408 6903.5 7347.4 9888.7 6826.8 5318 6472.2 10175 1 1 0 1 1 1 1 1 1 1 1 13362000 9891000 3470600 13525 1779 12510 71314;71315;71316 86160;86161 86160 2391;2392;2393;2394 2 MGQMAMGGAMGINNR 2 Oxidation (M) 1569.652 0.65202224 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 2 0 By MS/MS By MS/MS 6.5 2.52 2 1 4 9 8 8 34.812 35.115 2;3 5.8212E-08 7069 20211116_3447_TMUAki_TMT10x_S_F8 106.13 99.443 1543000 2489100 30666 3169200 1887000 1538400 1622200 1629100 1657300 1436600 2156000 1436800 2325100 147990 3160700 1804100 1669800 1660400 1646000 1702200 1411000 2064400 17 17 9 17 17 17 17 17 17 17 17 396860 639210 6120.2 792730 897920 694560 584020 313870 304900 305730 530850 369520 597030 36820 796400 853150 705070 600170 338090 330420 298930 505100 8 8 2 8 8 8 8 8 8 8 8 1146100 1849900 24546 2376400 989100 843830 1038200 1315200 1352400 1130900 1625100 1067300 1728100 111170 2364300 950970 964770 1060300 1307900 1371700 1112100 1559300 9 9 7 9 9 9 9 9 9 9 9 214600000 119270000 95334000 13526 1779 12510 71317;71318;71319;71320;71321;71322;71323;71324;71325;71326;71327;71328;71329;71330;71331;71332 86162;86163;86164;86165;86166;86167;86168;86169;86170;86171;86172;86173;86174;86175;86176;86177;86178;86179;86180;86181;86182;86183;86184;86185 86183 2391;2392;2393;2394 24 MGSGIER Unmodified 748.35377 0.35377325 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS 3 0 1 1 30.122 29.859 2 0.042249 8992 20211116_3441_TMUAki_TMT10x_S_F3 73.324 34.487 391260 672030 0 649220 446910 323700 512090 219900 238290 275540 440330 364290 626990 32175 659060 430090 347510 507550 230490 261570 266810 418520 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 391260 672030 0 649220 446910 323700 512090 219900 238290 275540 440330 364290 626990 32175 659060 430090 347510 507550 230490 261570 266810 418520 1 1 0 1 1 1 1 1 1 1 1 12775000 0 12775000 13527 1171 12511 71333 86186 86186 1 MGSQVIIPYR Oxidation (M) 1178.6118 0.61177885 1864 Q16795 NDUFA9 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial yes yes 0 0 1 0 By MS/MS 7 0 1 1 42.571 43.147 2 0.0031499 13020 20211116_3446_TMUAki_TMT10x_S_F7 80.755 56.42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13528 1864 12512 71334 86187 86187 2479 1 MGTPVPRPPQDMGQIGVR 2 Oxidation (M) 1966.9717 0.97170012 1633 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 2 1 By MS/MS By MS/MS 8 0 2 1 1 35.168 35.593 3 0.02577 8063 20211116_3436_TMUAki_TMT10x_P_F8 43.794 32.103 151120 267730 3742.2 288720 205640 175760 162900 143050 135870 147170 199130 140730 249900 16186 291370 196290 185290 166640 147210 141660 143570 190130 3 3 2 3 3 3 3 3 3 3 3 43935 75495 3666.5 84543 88602 73404 56869 33668 25011 26826 46626 40936 70478 7685.2 85442 84380 74573 58358 36032 27605 26482 44309 1 1 1 1 1 1 1 1 1 1 1 107190 192240 75.758 204180 117040 102360 106030 109380 110860 120350 152500 99799 179420 8500.9 205930 111910 110710 108280 111180 114050 117090 145820 2 2 1 2 2 2 2 2 2 2 2 41954000 23969000 17985000 13529 1633 12513 71335;71336 86188 86188 2191;2192 1 MGTPVPRPPQDMGQIGVR Oxidation (M) 1950.9768 0.9767855 1633 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 1 1 By MS/MS By MS/MS 6.25 3.03 1 3 1 3 40.711 40.81 3 1.0112E-05 9408 20211116_3447_TMUAki_TMT10x_S_F8 87.24 63.187 1749700 2850900 15394 3369500 1906700 1636200 1340100 1818400 1583800 1541500 2280500 1629200 2662200 157440 3374900 1814600 1777800 1396500 1831300 1625300 1516900 2178400 4 4 2 4 4 4 4 4 4 4 4 396250 568560 12017 752150 721510 744730 497120 341600 291560 272790 473850 369040 531220 48607 754230 686900 750080 509620 365600 312070 269250 451460 1 1 1 1 1 1 1 1 1 1 1 1353500 2282400 3376.5 2617400 1185200 891460 843020 1476800 1292200 1268700 1806700 1260200 2131000 108830 2620700 1127700 1027800 886910 1465700 1313200 1247700 1726900 3 3 1 3 3 3 3 3 3 3 3 395660000 172020000 223630000 13530 1633 12513 71337;71338;71339;71340 86189;86190;86191;86192 86191 2191;2192 4 MGTRSTLVAIR Oxidation (M) 1219.6707 0.67069072 2021 Q6UW60-2 yes yes 0 0 1 1 By MS/MS 1 0 1 1 34.879 34.868 3 0.081102 9870 20211116_3439_TMUAki_TMT10x_S_F1 40.589 13.26 467400 976190 20306 1126700 555220 420950 641110 637450 591760 585760 879830 435350 911450 58905 1128200 535760 477230 644280 635640 614400 574210 839830 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 467400 976190 20306 1126700 555220 420950 641110 637450 591760 585760 879830 435350 911450 58905 1128200 535760 477230 644280 635640 614400 574210 839830 1 1 1 1 1 1 1 1 1 1 1 134620000 0 134620000 13531 2021 12514 71341 86193 86193 2554 1 MGVGKLEMYVLNPVK Unmodified 1676.8994 0.89937002 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0 2 1 1 74.721 74.545 3 0.00022177 26007 20211116_3430_TMUAki_TMT10x_P_F3 77.222 58.147 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13532 1057 12515 71342;71343 86194;86195 86194 2 MGVLFCSSCCPDLPFIYAFGGQK Oxidation (M) 2669.1787 0.17865771 1653 Q13610 PWP1 Periodic tryptophan protein 1 homolog yes yes 0 0 1 0 By matching By MS/MS 2.67 0.471 1 2 2 1 80.33 80.289 3 6.3936E-08 29347 20211116_3441_TMUAki_TMT10x_S_F3 97.271 89.467 1937500 3223000 51324 3097000 2896600 2506800 2382100 2057400 1558200 2064300 2569000 1804400 3006900 221900 3159500 2767600 2580000 2417600 2114700 1657100 2015800 2446900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1937500 3223000 51324 3097000 2896600 2506800 2382100 2057400 1558200 2064300 2569000 1804400 3006900 221900 3159500 2767600 2580000 2417600 2114700 1657100 2015800 2446900 1 1 1 1 1 1 1 1 1 1 1 1434700000 943420000 491250000 13533 1653 12516 71344;71345;71346 86196 86196 2218 1 MGVPYCIIK Oxidation (M) 1095.5457 0.54567312 1358 P62424 RPL7A 60S ribosomal protein L7a yes yes 0 0 1 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 54.089 54.002 2 0.0025137 15717 20211116_3436_TMUAki_TMT10x_P_F8 94.262 74.098 14335000 27013000 85732 26597000 21791000 26312000 14996000 27236000 26089000 22083000 23281000 13347000 25204000 1308600 27158000 20724000 26843000 15909000 27491000 25956000 21780000 22545000 5 5 2 5 5 5 5 5 5 5 5 6119200 11367000 0 10546000 14263000 18369000 8829300 11033000 10865000 9120400 9337600 5697200 10603000 569190 10934000 13536000 18065000 9303100 11531000 10910000 8986300 9054900 2 2 0 2 2 2 2 2 2 2 2 8215800 15646000 85732 16051000 7528100 7942900 6166300 16203000 15225000 12963000 13944000 7650200 14601000 739400 16225000 7188500 8777400 6606400 15960000 15047000 12794000 13490000 3 3 2 3 3 3 3 3 3 3 3 1459500000 956080000 503430000 13534 1358 12517 71347;71348;71349;71350 86197;86198;86199;86200;86201;86202 86199 1822 6 MGVPYCIIK Unmodified 1079.5508 0.5507585 1358 P62424 RPL7A 60S ribosomal protein L7a yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 62.605 62.363 2 0.00020902 20619 20211116_3429_TMUAki_TMT10x_P_F2 134.44 90.302 23693000 39522000 200290 43558000 31040000 31612000 25561000 19924000 16527000 20158000 28204000 22061000 36894000 2229300 43973000 29635000 32678000 25935000 20854000 17623000 19678000 26846000 4 4 3 4 4 4 4 4 4 4 4 12200000 19984000 65702 21249000 21246000 23510000 16828000 10512000 8694000 10637000 13990000 11360000 18652000 1174900 21622000 20263000 23519000 17048000 11348000 9388500 10384000 13331000 2 2 1 2 2 2 2 2 2 2 2 11493000 19538000 134590 22309000 9793300 8101900 8733600 9411800 7832700 9521100 14215000 10702000 18241000 1054400 22351000 9371800 9159400 8886400 9506400 8234300 9294300 13515000 2 2 2 2 2 2 2 2 2 2 2 1511300000 950780000 560470000 13535 1358 12517 71351;71352;71353;71354 86203;86204;86205;86206 86204 4 MGVVECAK Oxidation (M) 908.40957 0.40957357 3217 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 1 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 32.614 32.71 2 0.026192 7453 20211116_3431_TMUAki_TMT10x_P_F4 74.255 56.22 1647200 2745000 23273 2489500 2302600 2319300 2028300 1074900 1171000 1127000 1901100 1533800 2560400 164430 2555200 2202100 2345300 2045200 1157300 1254700 1098500 1811300 4 4 2 4 4 4 4 4 4 4 4 1087800 1784400 18965 1552600 1707300 1905400 1364400 777810 848810 817310 1287800 1013000 1664100 116540 1605600 1629600 1894000 1385900 848910 901660 796600 1228700 1 1 1 1 1 1 1 1 1 1 1 559380 960630 4307.7 936880 595270 413980 663900 297120 322160 309680 613270 520850 896280 47891 949630 572570 451360 659260 308370 353030 301940 582580 3 3 1 3 3 3 3 3 3 3 3 47987000 40493000 7494200 13536 3217 12518 71355;71356 86207 86207 3204 1 MGVVECAKHELLQPFNVLYEK Oxidation (M) 2519.2553 0.25525177 3217 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 1 1 By MS/MS 7.5 0.5 1 1 2 76.947 76.949 4 0.0107 24584 20211116_3447_TMUAki_TMT10x_S_F8 45.395 30.467 9321400 18010000 0 14271000 18181000 12945000 12947000 16361000 14075000 14527000 14361000 8678500 16792000 817530 14803000 17296000 13347000 13441000 16408000 14279000 14263000 13844000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9321400 18010000 0 14271000 18181000 12945000 12947000 16361000 14075000 14527000 14361000 8678500 16792000 817530 14803000 17296000 13347000 13441000 16408000 14279000 14263000 13844000 2 2 0 2 2 2 2 2 2 2 2 1216800000 0 1216800000 13537 3217 12519 71357;71358 86208;86209 86209 3204 2 MGWIQPR Oxidation (M) 902.44326 0.44325696 1679 Q14137;Q14137-2 BOP1 Ribosome biogenesis protein BOP1 yes no 0 0 1 0 By MS/MS By MS/MS 8 0 2 1 1 36.402 36.801 2 0.077975 8143 20211116_3447_TMUAki_TMT10x_S_F8 67.035 44.904 566500 900940 8003.8 964940 961110 768400 664930 517530 535490 493710 757000 527530 840910 59953 976930 914590 789280 685940 538130 558290 483170 723390 2 2 2 2 2 2 2 2 2 2 2 287440 461020 4547.4 470170 661320 538930 385130 245580 258360 232940 356400 267670 430220 33305 480030 627440 538190 401170 264120 271860 228020 340770 1 1 1 1 1 1 1 1 1 1 1 279060 439920 3456.4 494770 299790 229470 279800 271950 277130 260780 400610 259860 410690 26648 496900 287160 251090 284780 274020 286430 255150 382630 1 1 1 1 1 1 1 1 1 1 1 17650000 9645000 8005000 13538 1679 12520 71359;71360 86210 86210 2246 1 MGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGR Oxidation (M) 3519.782 0.78203867 764 P22061;P22061-2 PCMT1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes no 0 0 1 1 By MS/MS By MS/MS 6.2 1.17 2 1 1 1 2 3 76.847 76.849 4 3.1519E-17 24467 20211116_3434_TMUAki_TMT10x_P_F6 119.61 116.86 18017000 29629000 241580 25930000 21266000 27315000 22836000 20681000 20663000 20383000 22666000 16776000 27633000 1597700 26735000 20434000 27592000 23014000 21352000 21187000 19919000 21803000 5 5 3 5 5 5 5 5 5 5 5 5019100 8488800 177640 7916700 4649900 10854000 6263300 5761700 5895300 5913600 6366700 4674600 7918800 576500 8160700 4509900 10762000 6257400 6119600 6030300 5769300 6127200 2 2 2 2 2 2 2 2 2 2 2 12998000 21140000 63946 18013000 16616000 16461000 16573000 14919000 14768000 14469000 16299000 12102000 19714000 1021200 18574000 15924000 16830000 16757000 15233000 15157000 14150000 15676000 3 3 1 3 3 3 3 3 3 3 3 8809700000 1351800000 7457900000 13539 764 12521 71361;71362;71363;71364;71365 86211;86212;86213;86214;86215 86211 879 5 MGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGR Unmodified 3503.7871 0.78712404 764 P22061;P22061-2 PCMT1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes no 0 0 0 1 By MS/MS 8 0 1 1 77.543 77.55 4 7.8654E-31 25420 20211116_3436_TMUAki_TMT10x_P_F8 151.41 146.25 3749400 5926500 0 6166400 3512900 6225400 4986300 2373000 2342100 3096400 3983200 3490500 5531000 231410 6274700 3400400 6251900 4898900 2628800 2556600 2994300 3791600 1 1 0 1 1 1 1 1 1 1 1 3749400 5926500 0 6166400 3512900 6225400 4986300 2373000 2342100 3096400 3983200 3490500 5531000 231410 6274700 3400400 6251900 4898900 2628800 2556600 2994300 3791600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1907400000 1907400000 0 13540 764 12521 71366 86216 86216 1 MGYMDPR Unmodified 868.35714 0.35714407 777 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 By MS/MS 4 0 1 1 36.221 36.353 2 0.085396 9348 20211116_3442_TMUAki_TMT10x_S_F4 61.006 40.485 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13541 777 12522 71367 86217 86217 1 MGYQCTFGVLQAGQYGVAQTR Unmodified 2334.0885 0.088520791 811 P26358;P26358-2;P26358-3 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 68.679 68.395 3 0.042065 23592 20211116_3430_TMUAki_TMT10x_P_F3 40.88 31.131 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13542 811 12523 71368 86218 86218 1 MHCCDEVQPK Oxidation (M) 1318.5104 0.51042661 1716 Q14566 MCM6 DNA replication licensing factor MCM6 yes yes 0 0 1 0 By MS/MS 3 0 1 1 27.421 27.138 3 0.0013967 7965 20211116_3441_TMUAki_TMT10x_S_F3 79.148 74.85 35853 56244 0 54516 36746 34282 36565 18394 26383 32579 32087 33381 52475 2816.7 55435 35218 35816 36784 19928 27488 31234 30776 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35853 56244 0 54516 36746 34282 36565 18394 26383 32579 32087 33381 52475 2816.7 55435 35218 35816 36784 19928 27488 31234 30776 1 1 0 1 1 1 1 1 1 1 1 2891800 0 2891800 13543 1716 12524 71369 86219 86219 2308 1 MHDLNTDQENLVGTHDAPIR Oxidation (M) 2291.0601 0.060057435 234 O43684;O43684-2 BUB3 Mitotic checkpoint protein BUB3 yes no 0 0 1 0 By MS/MS By MS/MS 2.64 1.23 2 4 2 2 1 5 6 35.416 35.366 3;4 5.625E-25 9679 20211116_3429_TMUAki_TMT10x_P_F2 175.16 158.85 5969100 9289500 25810 10239000 8560100 7023800 5304200 5580700 6310100 4583500 7047200 5557700 8671600 429260 10330000 8125000 7321300 5581700 5717100 6401600 4517600 6775400 11 11 4 11 11 11 11 11 11 11 11 4291100 6261200 6922.3 6937600 6645600 5388000 3331700 3680100 3917500 2922300 4736300 3995400 5844900 295030 7006600 6288400 5546200 3570900 3805100 3988800 2885300 4543600 6 6 1 6 6 6 6 6 6 6 6 1678000 3028300 18888 3301500 1914500 1635800 1972500 1900700 2392600 1661200 2310900 1562300 2826800 134230 3323800 1836600 1775100 2010800 1911900 2412800 1632300 2231700 5 5 3 5 5 5 5 5 5 5 5 2831600000 1834000000 997650000 13544 234 12525 71370;71371;71372;71373;71374;71375;71376;71377;71378;71379;71380 86220;86221;86222;86223;86224;86225;86226;86227;86228;86229 86223 187 10 MHDLNTDQENLVGTHDAPIR Unmodified 2275.0651 0.065142812 234 O43684;O43684-2 BUB3 Mitotic checkpoint protein BUB3 yes no 0 0 0 0 By MS/MS By MS/MS 3.44 0.831 2 1 6 2 7 33.972 33.953 3;4 2.3228E-41 10578 20211116_3431_TMUAki_TMT10x_P_F4 200.6 193.87 3777400 6087000 41968 7476100 5334700 4434800 3586200 5189400 5487100 4295400 5578200 3516800 5685000 298420 7483300 5069000 4722500 3787900 5211400 5502200 4231900 5378300 10 10 4 10 10 10 10 10 10 10 10 1278700 1895000 23359 2374700 3367300 2713000 1848500 1616800 1504500 1324400 1664800 1190700 1770000 141750 2393700 3190900 2718300 1943800 1690400 1551300 1305500 1601000 2 2 1 2 2 2 2 2 2 2 2 2498600 4192000 18609 5101500 1967400 1721900 1737700 3572600 3982600 2971000 3913400 2326200 3915000 156670 5089600 1878000 2004200 1844100 3521000 3950900 2926400 3777300 8 8 3 8 8 8 8 8 8 8 8 1832600000 1370800000 461780000 13545 234 12525 71381;71382;71383;71384;71385;71386;71387;71388;71389 86230;86231;86232;86233;86234;86235;86236;86237;86238;86239;86240 86231 11 MHFANQSIEPLGR Oxidation (M) 1514.73 0.72999651 2469 Q96G28;Q96G28-2 CFAP36 Cilia- and flagella-associated protein 36 yes no 0 0 1 0 By MS/MS 5 0 1 1 35.48 35.656 3 0.025001 7771 20211116_3444_TMUAki_TMT10x_S_F5 50.897 32.76 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13546 2469 12526 71390 86241 86241 2763 1 MHGGGPTVTAGLPLPK Oxidation (M) 1547.813 0.81299786 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 1 0 By MS/MS By MS/MS 4.75 3.27 2 2 4 4 4 45.159 45.151 3;4 1.2019E-07 12133 20211116_3436_TMUAki_TMT10x_P_F8 112.42 83.447 10968000 18158000 325700 20211000 17387000 18836000 12384000 16928000 15827000 13907000 16923000 10214000 16951000 1251700 20453000 16562000 19231000 12930000 17217000 15989000 13707000 16291000 10 10 7 10 10 10 10 10 10 10 10 6163700 9835100 210140 11241000 13379000 14746000 8457800 8927900 8722800 7564000 9422200 5740200 9182500 771250 11421000 12715000 14675000 8844600 9330000 8887100 7443600 9067600 5 5 3 5 5 5 5 5 5 5 5 4803900 8323300 115560 8970600 4007700 4090700 3926500 7999900 7104200 6343400 7500600 4473700 7769000 480410 9032800 3846800 4556200 4085500 7886900 7102300 6263600 7223300 5 5 4 5 5 5 5 5 5 5 5 1331800000 833950000 497860000 13547 629 12527 71391;71392;71393;71394;71395;71396;71397;71398 86242;86243;86244;86245;86246;86247;86248;86249;86250;86251;86252 86245 655 11 MHGGGPTVTAGLPLPK Unmodified 1531.8181 0.81808324 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS 1.5 0.5 1 1 2 49.669 49.396 3 1.3855E-05 15361 20211116_3429_TMUAki_TMT10x_P_F2 95.264 80.292 3209300 5087200 2447.6 6407400 5715100 6573800 3922300 3159700 3203000 3460400 3602300 2988200 4751900 303450 6445900 5435000 6610000 4050100 3393900 3304100 3367300 3462700 1 1 1 1 1 1 1 1 1 1 1 3209300 5087200 2447.6 6407400 5715100 6573800 3922300 3159700 3203000 3460400 3602300 2988200 4751900 303450 6445900 5435000 6610000 4050100 3393900 3304100 3367300 3462700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 384750000 384750000 0 13548 629 12527 71399;71400 86253;86254 86254 2 MHNQIPQVTSDGKR Oxidation (M) 1625.7944 0.79438768 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 1 1 By MS/MS 4.67 0.471 1 2 3 29.3 29.268 3;4 4.6992E-05 6360 20211116_3433_TMUAki_TMT10x_P_F5 96.866 81.6 688160 1079000 7192.3 1028900 1269100 1302500 945610 604600 670130 584180 889350 640800 1006600 71893 1057300 1209200 1294400 967560 649330 701570 571380 851140 4 4 4 4 4 4 4 4 4 4 4 688160 1079000 7192.3 1028900 1269100 1302500 945610 604600 670130 584180 889350 640800 1006600 71893 1057300 1209200 1294400 967560 649330 701570 571380 851140 4 4 4 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 54760000 54760000 0 13549 2334 12528 71401;71402;71403 86255;86256;86257;86258 86257 2682 4 MHSLATAAPVPTTLAQVDREK Acetyl (Protein N-term);Oxidation (M) 2293.1736 0.17363063 2346 Q92600;Q92600-3;Q92600-2 RQCD1 Cell differentiation protein RCD1 homolog yes no 1 0 1 1 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 50.78 50.944 3 1.2249E-26 13922 20211116_3444_TMUAki_TMT10x_S_F5 117.37 107.97 2689900 4771700 90525 5612200 2385000 2508700 2047400 4160100 4323500 3906400 4429800 2505300 4455600 303110 5619600 2283800 2784300 2164900 4138800 4302600 3825700 4270000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2689900 4771700 90525 5612200 2385000 2508700 2047400 4160100 4323500 3906400 4429800 2505300 4455600 303110 5619600 2283800 2784300 2164900 4138800 4302600 3825700 4270000 2 2 2 2 2 2 2 2 2 2 2 482870000 0 482870000 13550 2346 12529 71404;71405;71406 86259;86260;86261 86260 2695 3 MHSPQTSAMLFTVDNEAGK 2 Oxidation (M) 2094.935 0.93503984 1104 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 2 0 By MS/MS By MS/MS 5 0.816 1 1 1 2 1 42.496 42.579 3 3.352E-12 10590 20211116_3444_TMUAki_TMT10x_S_F5 124.84 109.45 760600 1281900 15012 1430900 1249400 1741300 777370 2284100 2542100 2059300 1610000 708220 1196700 73500 1453900 1186400 1766900 867840 2288200 2475800 2020500 1582000 2 2 1 2 2 2 2 2 2 2 2 311860 493940 15012 565970 852660 1275800 492570 801330 817550 653060 593560 290480 461170 47420 582910 809430 1245300 528520 834250 809550 643920 579520 1 1 1 1 1 1 1 1 1 1 1 448740 787990 0 864910 396770 465440 284800 1482800 1724500 1406200 1016500 417740 735570 26080 870940 376950 521660 339310 1453900 1666300 1376600 1002500 1 1 0 1 1 1 1 1 1 1 1 236130000 145880000 90250000 13551 1104 12530 71407;71408;71409 86262;86263;86264 86264 1467;1468 3 MHSVGICGSDVHYWEYGR Oxidation (M) 2167.9204 0.92039283 1473 Q00796;Q00796-2 SORD Sorbitol dehydrogenase yes no 0 0 1 0 By MS/MS 5 0 1 1 42.678 42.803 4 7.4529E-06 10638 20211116_3444_TMUAki_TMT10x_S_F5 86.222 80.793 650930 1029300 0 1130000 579780 516410 551840 846680 824950 845800 936370 606060 960870 51209 1136500 555110 571360 569670 844160 831240 826090 899830 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 650930 1029300 0 1130000 579780 516410 551840 846680 824950 845800 936370 606060 960870 51209 1136500 555110 571360 569670 844160 831240 826090 899830 1 1 0 1 1 1 1 1 1 1 1 54178000 0 54178000 13552 1473 12531 71410 86265 86265 1989 1 MIAGQVLDINLAAEPK Oxidation (M) 1697.9022 0.9022068 545 P07910-2;P07910-4;P07910 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 0 0 1 0 By MS/MS By MS/MS 5.3 1.41 1 1 5 7 7 6 15 12 68.014 68.065 2;3;4 1.661E-29 21623 20211116_3444_TMUAki_TMT10x_S_F5 198.03 111.44 111980000 194490000 1957400 169050000 140000000 229100000 145000000 205700000 208450000 196310000 175850000 104280000 181390000 11283000 175160000 134470000 229160000 148790000 210040000 208120000 192110000 170640000 35 35 29 35 35 35 35 35 35 35 35 64255000 106760000 984540 95192000 73090000 161300000 83804000 111300000 112150000 107090000 95870000 59834000 99576000 6226100 98917000 70402000 159120000 85323000 115560000 112280000 104760000 92986000 20 20 16 20 20 20 20 20 20 20 20 47722000 87734000 972860 73862000 66915000 67800000 61200000 94398000 96294000 89222000 79979000 44441000 81813000 5057200 76240000 64071000 70042000 63463000 94480000 95848000 87352000 77658000 15 15 13 15 15 15 15 15 15 15 15 70275000000 37790000000 32485000000 13553 545 12532 71411;71412;71413;71414;71415;71416;71417;71418;71419;71420;71421;71422;71423;71424;71425;71426;71427;71428;71429;71430;71431;71432;71433;71434;71435;71436;71437 86266;86267;86268;86269;86270;86271;86272;86273;86274;86275;86276;86277;86278;86279;86280;86281;86282;86283;86284;86285;86286;86287;86288;86289;86290;86291;86292;86293;86294;86295;86296;86297;86298;86299;86300;86301 86293 491 36 MIAGQVLDINLAAEPK Unmodified 1681.9073 0.90729217 545 P07910-2;P07910-4;P07910 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 0 0 0 0 By MS/MS By MS/MS 6 1.33 3 4 4 4 3 10 8 77.388 77.399 2;3 1.315E-53 24783 20211116_3445_TMUAki_TMT10x_S_F6 276.41 240.9 129770000 212250000 751690 209170000 152100000 166160000 162640000 83775000 68607000 97914000 143890000 120830000 198040000 11033000 212970000 146100000 170070000 161510000 89757000 76582000 95045000 136470000 19 19 9 19 19 19 19 19 19 19 19 72274000 115880000 689020 116030000 76331000 114020000 91781000 47644000 39712000 55360000 80894000 67296000 108130000 6319200 118330000 73596000 114790000 90678000 52022000 44140000 53750000 76761000 12 12 8 12 12 12 12 12 12 12 12 57493000 96366000 62671 93146000 75767000 52140000 70861000 36131000 28895000 42554000 62996000 53529000 89907000 4714000 94639000 72506000 55286000 70835000 37735000 32442000 41296000 59714000 7 7 1 7 7 7 7 7 7 7 7 29122000000 14204000000 14918000000 13554 545 12532 71438;71439;71440;71441;71442;71443;71444;71445;71446;71447;71448;71449;71450;71451;71452;71453;71454;71455 86302;86303;86304;86305;86306;86307;86308;86309;86310;86311;86312;86313;86314;86315;86316;86317;86318;86319;86320 86318 19 MIAPEGSLVFHEK Oxidation (M) 1472.7334 0.73335055 1084 P48739;P48739-2;P48739-3 PITPNB Phosphatidylinositol transfer protein beta isoform yes no 0 0 1 0 By MS/MS By MS/MS 5.25 0.829 1 1 2 1 3 48.343 48.485 3 0.0049699 12822 20211116_3434_TMUAki_TMT10x_P_F6 60.901 39.948 12670000 21192000 112080 23899000 15828000 16040000 12472000 16563000 17019000 15125000 17755000 11797000 19784000 1069100 24072000 15090000 16837000 12967000 16771000 17141000 14831000 17105000 4 4 2 4 4 4 4 4 4 4 4 4034600 7237800 0 7558400 7810700 8690500 5240900 5341400 5654200 5174200 5678000 3756300 6754900 349290 7705100 7422200 8708300 5463200 5594800 5734900 5060300 5476600 1 1 0 1 1 1 1 1 1 1 1 8635700 13954000 112080 16340000 8017000 7349300 7230800 11222000 11364000 9950300 12077000 8040800 13030000 719770 16367000 7668100 8128600 7503500 11176000 11406000 9770400 11629000 3 3 2 3 3 3 3 3 3 3 3 1194400000 367710000 826690000 13555 1084 12533 71456;71457;71458;71459 86321;86322;86323;86324;86325 86321 1411 5 MIAPEGSLVFHEK Unmodified 1456.7384 0.73843593 1084 P48739;P48739-2;P48739-3 PITPNB Phosphatidylinositol transfer protein beta isoform yes no 0 0 0 0 By MS/MS 6 0 1 1 54.485 54.579 3 7.4716E-05 15338 20211116_3434_TMUAki_TMT10x_P_F6 93.958 57.999 10149000 16062000 539450 17186000 14857000 25264000 12207000 13011000 12510000 12780000 12288000 9454000 14992000 1410100 17574000 14212000 24964000 12530000 13840000 12705000 12491000 11861000 2 2 2 2 2 2 2 2 2 2 2 10149000 16062000 539450 17186000 14857000 25264000 12207000 13011000 12510000 12780000 12288000 9454000 14992000 1410100 17574000 14212000 24964000 12530000 13840000 12705000 12491000 11861000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 407880000 407880000 0 13556 1084 12533 71460 86326;86327 86327 2 MIASDSHRPEVK Oxidation (M) 1384.6769 0.67689831 3018 Q9NYF8;Q9NYF8-2;Q9NYF8-4;Q9NYF8-3 BCLAF1 Bcl-2-associated transcription factor 1 yes no 0 0 1 1 By MS/MS 4.5 0.5 1 1 2 28.277 28.266 4 0.023054 5652 20211116_3431_TMUAki_TMT10x_P_F4 54.524 41.544 261200 376450 7171.2 354540 251490 434260 262010 220460 230720 219520 305520 243260 351190 28203 364430 241840 432670 264250 234910 238740 214430 292400 1 1 1 1 1 1 1 1 1 1 1 261200 376450 7171.2 354540 251490 434260 262010 220460 230720 219520 305520 243260 351190 28203 364430 241840 432670 264250 234910 238740 214430 292400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12039000 12039000 0 13557 3018 12534 71461;71462 86328 86328 3073 1 MIDLIIPR Unmodified 969.56812 0.56812313 1229 P54886;P54886-2 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes no 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 72.954 72.895 2 0.0025588 23432 20211116_3436_TMUAki_TMT10x_P_F8 108.09 89.357 10763000 16462000 0 17964000 11600000 10795000 11601000 5820300 4532200 6851900 11009000 10020000 15367000 780970 18113000 11115000 11328000 11549000 6199600 5149900 6649400 10420000 2 2 0 2 2 2 2 2 2 2 2 4888600 7307100 0 8109700 5001200 6481600 5482600 2720400 2187200 3192900 4825400 4551400 6821300 362780 8192200 4804700 6618900 5434100 2969900 2462900 3098900 4573300 1 1 0 1 1 1 1 1 1 1 1 5874000 9155200 0 9854700 6598800 4313800 6118600 3099900 2345000 3659000 6183900 5468700 8545400 418190 9921200 6310000 4709100 6114700 3229700 2687000 3550500 5846500 1 1 0 1 1 1 1 1 1 1 1 1123500000 600360000 523150000 13558 1229 12535 71463;71464;71465 86329;86330;86331 86329 3 MIDLIIPR Oxidation (M) 985.56304 0.56303775 1229 P54886;P54886-2 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes no 0 0 1 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 59.984 60.177 2 0.016319 17952 20211116_3445_TMUAki_TMT10x_S_F6 81.191 56.855 17773000 28701000 24830 30132000 29505000 40154000 21692000 26932000 28507000 24358000 24238000 16549000 26786000 1635300 30789000 28094000 39991000 22623000 27973000 28552000 23896000 23514000 3 3 1 3 3 3 3 3 3 3 3 14201000 22723000 24830 24470000 25562000 36235000 18062000 21324000 22913000 19478000 19154000 13223000 21209000 1343600 25016000 24322000 35853000 18863000 22378000 22964000 19099000 18594000 2 2 1 2 2 2 2 2 2 2 2 3572200 5977900 0 5662100 3942800 3918900 3629900 5608200 5594800 4880800 5084100 3326000 5576800 291780 5772600 3772000 4137800 3759100 5595000 5587600 4796800 4920300 1 1 0 1 1 1 1 1 1 1 1 1068800000 429490000 639310000 13559 1229 12535 71466;71467;71468 86332 86332 1650 1 MIDMPVER 2 Oxidation (M) 1021.4573 0.45725205 1785 Q15287;Q15287-3;Q15287-2 RNPS1 RNA-binding protein with serine-rich domain 1 yes no 0 0 2 0 By MS/MS 2.5 0.5 1 1 2 31.237 31.135 2 0.055865 9517 20211116_3441_TMUAki_TMT10x_S_F3 46.129 32.134 232370 387950 37.231 368800 260600 216040 281890 188430 200710 185620 304000 216360 361930 17233 375300 250410 228890 282300 192890 211400 181400 290060 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 232370 387950 37.231 368800 260600 216040 281890 188430 200710 185620 304000 216360 361930 17233 375300 250410 228890 282300 192890 211400 181400 290060 2 2 1 2 2 2 2 2 2 2 2 22267000 0 22267000 13560 1785 12536 71469;71470 86333 86333 2400;2401 1 MIEEAGAIISTR Oxidation (M) 1305.6599 0.65985126 64 O00154-4;O00154;O00154-6;O00154-7;O00154-5;O00154-2;O00154-3 ACOT7 Cytosolic acyl coenzyme A thioester hydrolase yes no 0 0 1 0 By MS/MS By MS/MS 3.2 0.748 2 4 4 5 5 47.115 47.075 2;3 1.8027E-08 15829 20211116_3441_TMUAki_TMT10x_S_F3 144.55 107.21 11632000 19262000 34230 19608000 17130000 20395000 12844000 17360000 17980000 15225000 16361000 10830000 17975000 982420 19990000 16314000 20660000 13411000 17740000 18009000 14958000 15833000 9 9 5 9 9 9 9 9 9 9 9 7119000 11461000 22322 11774000 12616000 16388000 8925100 10524000 11088000 9081800 10013000 6628100 10695000 611760 12058000 12001000 16279000 9313000 10953000 11147000 8929200 9692300 5 5 2 5 5 5 5 5 5 5 5 4513300 7801100 11908 7833500 4514000 4006600 3918400 6836000 6891900 6143300 6348600 4202300 7279400 370660 7931900 4313000 4381300 4097800 6786900 6861900 6028400 6141100 4 4 3 4 4 4 4 4 4 4 4 2839200000 1563500000 1275700000 13561 64 12537 71471;71472;71473;71474;71475;71476;71477;71478;71479;71480 86334;86335;86336;86337;86338;86339;86340;86341;86342;86343 86340 34 10 MIEEAGAIISTR Unmodified 1289.6649 0.66493664 64 O00154-4;O00154;O00154-6;O00154-7;O00154-5;O00154-2;O00154-3 ACOT7 Cytosolic acyl coenzyme A thioester hydrolase yes no 0 0 0 0 By MS/MS By MS/MS 4 0.926 1 4 2 3 4 60.595 60.615 2;3 7.6192E-13 19201 20211116_3442_TMUAki_TMT10x_S_F4 179.08 143.73 44847000 69073000 489320 74604000 48280000 58099000 45841000 29724000 28817000 32955000 46597000 41760000 64474000 4222200 75471000 46261000 59568000 46099000 31750000 30692000 32052000 44400000 7 7 7 7 7 7 7 7 7 7 7 29928000 44315000 229080 48064000 32049000 45472000 31351000 18537000 18009000 21084000 29878000 27868000 41364000 2724500 48730000 30726000 45879000 31424000 20283000 19326000 20487000 28454000 4 4 4 4 4 4 4 4 4 4 4 14918000 24759000 260250 26540000 16231000 12627000 14490000 11187000 10808000 11871000 16720000 13892000 23109000 1497800 26741000 15535000 13690000 14675000 11468000 11366000 11565000 15946000 3 3 3 3 3 3 3 3 3 3 3 3047100000 1459000000 1588100000 13562 64 12537 71481;71482;71483;71484;71485;71486;71487 86344;86345;86346;86347;86348;86349;86350;86351;86352 86350 9 MIETAQVDER Unmodified 1190.5601 0.56013721 3165 Q9UL25 RAB21 Ras-related protein Rab-21 yes yes 0 0 0 0 By MS/MS 2 0 1 1 36.978 37.077 2 1.3311E-05 8887 20211116_3440_TMUAki_TMT10x_S_F2 139.43 94.551 239600 381200 1264.7 447960 256270 182660 284150 195580 196500 202490 329160 223100 355950 21277 448310 246510 202740 284060 198410 208450 197480 313420 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 239600 381200 1264.7 447960 256270 182660 284150 195580 196500 202490 329160 223100 355950 21277 448310 246510 202740 284060 198410 208450 197480 313420 1 1 1 1 1 1 1 1 1 1 1 23749000 0 23749000 13563 3165 12538 71488 86353 86353 1 MIEVVCNDR Unmodified 1134.5162 0.51616391 2742 Q9BZL1 UBL5 Ubiquitin-like protein 5 yes yes 0 0 0 0 By MS/MS 3 0 1 1 43.321 43.367 2 0.00036178 13272 20211116_3430_TMUAki_TMT10x_P_F3 91.265 64.128 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13564 2742 12539 71489 86354 86354 1 MIFDVESMKK Unmodified 1226.6039 0.60391628 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 1 By MS/MS 8 0 1 1 62.312 62.5 3 2.1607E-07 19180 20211116_3436_TMUAki_TMT10x_P_F8 107.11 93.421 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13565 586 12540 71490 86355 86355 1 MIFVGIK Oxidation (M) 822.46735 0.46734645 1463 P99999 CYCS Cytochrome c yes yes 0 0 1 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 56.815 56.528 2 0.014664 18228 20211116_3429_TMUAki_TMT10x_P_F2 98.513 49.665 15912000 26888000 82631 26315000 25767000 29281000 21118000 29167000 29696000 27053000 26443000 14816000 25087000 1500800 26931000 24592000 29644000 21930000 29597000 29720000 26508000 25609000 3 3 2 3 3 3 3 3 3 3 3 5985600 9400800 66892 9120900 11251000 16937000 9106400 11428000 12783000 11061000 10330000 5573700 8770900 632330 9441400 10738000 16648000 9463000 11886000 12757000 10818000 10041000 1 1 1 1 1 1 1 1 1 1 1 9926300 17487000 15739 17194000 14516000 12344000 12012000 17739000 16913000 15992000 16112000 9242200 16317000 868480 17489000 13855000 12996000 12467000 17711000 16963000 15691000 15568000 2 2 1 2 2 2 2 2 2 2 2 1391700000 650080000 741640000 13566 1463 12541 71491;71492;71493 86356;86357;86358 86356 1964 3 MIFVGIK Unmodified 806.47243 0.47243183 1463 P99999 CYCS Cytochrome c yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 66.63 66.587 2 0.0024249 21156 20211116_3431_TMUAki_TMT10x_P_F4 126.05 47.013 24720000 41695000 183640 46518000 41619000 44955000 35553000 25859000 19611000 26703000 32986000 23018000 38924000 2455700 47092000 39765000 45464000 35886000 27280000 21123000 26045000 31406000 3 3 2 3 3 3 3 3 3 3 3 14069000 23679000 65703 26492000 26743000 34846000 23725000 17149000 12496000 16483000 19165000 13100000 22106000 1403600 26952000 25571000 34586000 23875000 18310000 13441000 16126000 18281000 2 2 1 2 2 2 2 2 2 2 2 10650000 18016000 117940 20026000 14876000 10109000 11828000 8709200 7115300 10220000 13820000 9917400 16819000 1052100 20140000 14194000 10878000 12011000 8970700 7682700 9919100 13125000 1 1 1 1 1 1 1 1 1 1 1 1007200000 477250000 529920000 13567 1463 12541 71494;71495;71496 86359;86360;86361;86362 86359 4 MIGGLFIYNHK Oxidation (M) 1307.6696 0.66962808 2428 Q96CW1;Q96CW1-2 AP2M1 AP-2 complex subunit mu yes no 0 0 1 0 By MS/MS 3 0 1 1 54.906 54.71 3 0.027245 17983 20211116_3430_TMUAki_TMT10x_P_F3 56.632 28.718 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13568 2428 12542 71497 86363 86363 2748 1 MIGGPILPSER Oxidation (M) 1184.6223 0.62234354 1098 P49419-2;P49419;P49419-4 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 0 0 1 0 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 45.956 46.115 2 0.00092126 13103 20211116_3433_TMUAki_TMT10x_P_F5 85.67 65.115 3861100 6650600 0 7615600 3662500 3371400 3239100 7083500 7609300 5885200 6499500 3594500 6209400 243610 7637600 3496400 3779700 3443000 6978800 7510500 5797200 6304200 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3861100 6650600 0 7615600 3662500 3371400 3239100 7083500 7609300 5885200 6499500 3594500 6209400 243610 7637600 3496400 3779700 3443000 6978800 7510500 5797200 6304200 2 2 0 2 2 2 2 2 2 2 2 505400000 0 505400000 13569 1098 12543 71498;71499;71500 86364;86365;86366 86364 1459 3 MIGGPILPSER Unmodified 1168.6274 0.62742892 1098 P49419-2;P49419;P49419-4 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 54.037 54.557 2 4.3386E-07 15615 20211116_3445_TMUAki_TMT10x_S_F6 111.17 79.054 12414000 21017000 117070 23086000 12142000 10531000 10382000 12140000 10727000 12022000 16153000 11560000 19618000 1132200 23217000 11605000 11539000 10634000 12258000 11090000 11746000 15415000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12414000 21017000 117070 23086000 12142000 10531000 10382000 12140000 10727000 12022000 16153000 11560000 19618000 1132200 23217000 11605000 11539000 10634000 12258000 11090000 11746000 15415000 2 2 1 2 2 2 2 2 2 2 2 400850000 0 400850000 13570 1098 12543 71501;71502;71503 86367;86368;86369;86370 86368 4 MIIEEAKR Oxidation (M) 1004.5325 0.5324659 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 1 1 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 33.122 33.154 3 0.0031 8003 20211116_3433_TMUAki_TMT10x_P_F5 87.181 49.454 2196800 3459500 23262 3303700 3029000 4140300 1485500 1690400 1815900 1878100 2560700 2045600 3227500 207650 3393800 2866400 4111200 1597700 1847900 1859400 1826500 2447200 3 3 1 3 3 3 3 3 3 3 3 1692400 2682000 23262 2524700 2516800 3790500 925960 1404600 1538600 1552100 2001000 1576000 2502000 170480 2605600 2374400 3729800 1041400 1552900 1554800 1509800 1915900 2 2 1 2 2 2 2 2 2 2 2 504380 777550 0 779040 512210 349840 559500 285740 277390 326030 559760 469590 725540 37167 788230 492010 381430 556320 294960 304560 316760 531240 1 1 0 1 1 1 1 1 1 1 1 221500000 199870000 21626000 13571 1079 12544 71504;71505;71506 86371;86372;86373 86371 1408 3 MIIEEAKR Unmodified 988.53755 0.53755128 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 1 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 37.709 37.752 3 0.00023782 8259 20211116_3434_TMUAki_TMT10x_P_F6 144.12 75.739 5244500 7844300 60735 8945000 7591200 6672400 6214300 2912200 2619800 3268300 6005000 4883600 7323700 518980 9013600 7247500 6853100 6264200 3161300 2942600 3177400 5688100 4 4 3 4 4 4 4 4 4 4 4 3774700 5510800 59241 6259400 6148600 5584300 4488100 2045200 1843100 2348500 4142100 3515000 5144900 396110 6322600 5857100 5651000 4557400 2267100 2072400 2281200 3924500 3 3 2 3 3 3 3 3 3 3 3 1469800 2333600 1493 2685600 1442600 1088100 1726200 866980 776670 919820 1863000 1368600 2178800 122870 2691000 1390500 1202100 1706800 894230 870220 896170 1763500 1 1 1 1 1 1 1 1 1 1 1 278610000 188520000 90087000 13572 1079 12544 71507;71508;71509 86374;86375;86376;86377 86375 4 MIKPFFHSLSEK Oxidation (M) 1478.7592 0.75917137 607 P10599 TXN Thioredoxin yes yes 0 0 1 1 By MS/MS By MS/MS 3.13 2.12 3 4 4 2 2 8 7 49.441 49.334 3;4 6.1924E-06 15741 20211116_3430_TMUAki_TMT10x_P_F3 108.72 86.485 51836000 85328000 560350 87068000 113780000 139310000 69718000 103170000 96641000 85145000 83758000 48267000 79627000 5473900 89482000 108010000 137880000 73855000 106180000 96680000 83899000 81197000 20 20 10 20 20 20 20 20 20 20 20 39482000 64136000 454140 65020000 101080000 127180000 60240000 76728000 70491000 63126000 62982000 36764000 59849000 4437400 67198000 95916000 124590000 63557000 80151000 70997000 62213000 60989000 13 13 7 13 13 13 13 13 13 13 13 12354000 21192000 106220 22048000 12700000 12130000 9478300 26439000 26150000 22018000 20776000 11503000 19777000 1036400 22284000 12097000 13291000 10299000 26027000 25683000 21686000 20208000 7 7 3 7 7 7 7 7 7 7 7 19540000000 12686000000 6854000000 13573 607 12545 71510;71511;71512;71513;71514;71515;71516;71517;71518;71519;71520;71521;71522;71523;71524 86378;86379;86380;86381;86382;86383;86384;86385;86386;86387;86388;86389;86390;86391;86392;86393;86394;86395;86396;86397;86398 86385 589 21 MIKPFFHSLSEK Unmodified 1462.7643 0.76425675 607 P10599 TXN Thioredoxin yes yes 0 0 0 1 By MS/MS 4 0 1 1 54.555 54.713 3 1.9873E-07 16265 20211116_3431_TMUAki_TMT10x_P_F4 131.26 109.63 4787700 7432900 0 8070800 10555000 9840100 6761600 3723300 2967600 3817800 5527800 4457600 6938000 449570 8215000 10023000 9777800 6939500 4097100 3275900 3724800 5253200 1 1 0 1 1 1 1 1 1 1 1 4787700 7432900 0 8070800 10555000 9840100 6761600 3723300 2967600 3817800 5527800 4457600 6938000 449570 8215000 10023000 9777800 6939500 4097100 3275900 3724800 5253200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1106000000 1106000000 0 13574 607 12545 71525 86399 86399 1 MILEIMHK Unmodified 1013.5402 0.54019382 3032 Q9NZI8 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 2 4 3 3 60.768 60.784 3 0.00063184 18438 20211116_3428_TMUAki_TMT10x_P_F1 109.21 79.23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13575 3032 12546 71526;71527;71528;71529;71530;71531 86400;86401;86402;86403;86404;86405 86400 6 MILEIMHK 2 Oxidation (M) 1045.53 0.53002306 3032 Q9NZI8 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 0 0 2 0 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 39.237 39.445 3 0.031824 10568 20211116_3433_TMUAki_TMT10x_P_F5 53.754 35.486 3620700 5883900 42973 5418400 6608300 8336800 4580500 5482000 5651100 4948000 5224200 3371500 5488600 371240 5604200 6287300 8248800 4785400 5701900 5687100 4854500 5052800 5 5 3 5 5 5 5 5 5 5 5 3108600 5047000 31273 4550300 6047600 7830500 4021500 4895700 5038100 4373500 4539100 2894600 4707500 317750 4726200 5749000 7709000 4216600 5110100 5063200 4292900 4394200 3 3 2 3 3 3 3 3 3 3 3 512090 836960 11700 868080 560730 506260 559040 586310 613080 574540 685050 476890 781080 53494 877970 538280 539860 568820 591730 623890 561610 658610 2 2 1 2 2 2 2 2 2 2 2 379110000 286070000 93035000 13576 3032 12546 71532;71533;71534;71535;71536 86406;86407;86408;86409;86410;86411 86407 3081;3082 6 MILEIMHK Oxidation (M) 1029.5351 0.53510844 3032 Q9NZI8 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 0 0 1 0 By MS/MS By MS/MS 6.6 0.49 2 3 4 1 47.193 47.521 3 0.0062756 15981 20211116_3435_TMUAki_TMT10x_P_F7 69.825 52.499 1087500 1688600 5977.4 1745600 2152200 2304800 1324300 1357200 1073900 1156000 1464200 1012600 1575800 110650 1785100 2043100 2292200 1378800 1421700 1117300 1137300 1400400 1 1 1 1 1 1 1 1 1 1 1 1087500 1688600 5977.4 1745600 2152200 2304800 1324300 1357200 1073900 1156000 1464200 1012600 1575800 110650 1785100 2043100 2292200 1378800 1421700 1117300 1137300 1400400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 525420000 525420000 0 13577 3032 12546 71537;71538;71539;71540;71541 86412;86413;86414;86415 86414 3081;3082 4 MILIQDGSQNTNVDKPLR Oxidation (M) 2057.0575 0.057538239 2380 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 1 1 By MS/MS By MS/MS 6.5 0.5 4 4 4 4 46.941 47.267 3;4 1.2186E-57 12666 20211116_3445_TMUAki_TMT10x_S_F6 239.33 219.24 25208000 42635000 291740 44865000 39666000 50967000 28981000 50950000 54373000 41350000 41027000 23472000 39791000 2429800 45704000 37774000 51545000 30742000 51516000 53731000 40780000 39990000 11 11 5 11 11 11 11 11 11 11 11 14709000 24139000 254080 25548000 30991000 41482000 21467000 28057000 29673000 22701000 23020000 13697000 22529000 1618100 26202000 29487000 40974000 22527000 29044000 29592000 22391000 22413000 6 6 3 6 6 6 6 6 6 6 6 10498000 18496000 37660 19318000 8675500 9485400 7514100 22893000 24700000 18649000 18007000 9774700 17262000 811690 19502000 8287100 10571000 8214600 22473000 24138000 18389000 17578000 5 5 2 5 5 5 5 5 5 5 5 4343100000 2368500000 1974600000 13578 2380 12547 71542;71543;71544;71545;71546;71547;71548;71549 86416;86417;86418;86419;86420;86421;86422;86423;86424;86425;86426 86423 2717 11 MILIQDGSQNTNVDKPLR Unmodified 2041.0626 0.062623617 2380 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 54.207 54.529 3 9.1966E-71 15466 20211116_3447_TMUAki_TMT10x_S_F8 288.82 261.41 32739000 55196000 333350 62522000 40670000 38106000 31753000 26499000 21729000 27677000 39188000 30484000 51531000 3026300 62900000 38785000 40065000 32364000 27563000 23163000 26982000 37263000 7 7 5 7 7 7 7 7 7 7 7 11466000 19191000 225060 21328000 22623000 23736000 16326000 10146000 8262500 10420000 13777000 10678000 17916000 1316600 21643000 21547000 23727000 16640000 11010000 8954300 10166000 13120000 3 3 3 3 3 3 3 3 3 3 3 21272000 36004000 108290 41194000 18047000 14369000 15427000 16353000 13466000 17256000 25411000 19807000 33615000 1709700 41257000 17238000 16338000 15725000 16553000 14209000 16816000 24143000 4 4 2 4 4 4 4 4 4 4 4 4418600000 2388300000 2030300000 13579 2380 12547 71550;71551;71552;71553 86427;86428;86429;86430;86431;86432;86433 86433 7 MILLEVNNR Oxidation (M) 1116.5961 0.59612879 168 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 0 0 1 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 47.196 47.357 2 0.00062116 12372 20211116_3434_TMUAki_TMT10x_P_F6 88.954 72.027 9179400 14697000 140630 15588000 13946000 16191000 10417000 14329000 14823000 12341000 13816000 8547900 13717000 955700 15849000 13292000 16415000 10888000 14603000 14851000 12135000 13359000 4 4 3 4 4 4 4 4 4 4 4 4997300 7851700 65836 8241100 9224800 12422000 6551700 7389200 7722700 6671300 7510800 4653500 7327900 534880 8442300 8782000 12284000 6821700 7745400 7797800 6545100 7252000 2 2 2 2 2 2 2 2 2 2 2 4182100 6845500 74794 7347100 4721100 3768800 3865700 6939600 7100000 5670100 6305200 3894500 6389400 420830 7406300 4509600 4131400 4066000 6857700 7053300 5590000 6107000 2 2 1 2 2 2 2 2 2 2 2 523020000 199060000 323960000 13580 168 12548 71554;71555;71556;71557 86434;86435;86436;86437;86438 86436 130 5 MILLEVNNR Unmodified 1100.6012 0.60121417 168 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 0 0 0 0 By MS/MS 7 0 1 1 58.316 58.832 2 0.0070818 19424 20211116_3446_TMUAki_TMT10x_S_F7 68.625 55.637 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13581 168 12548 71558 86439 86439 1 MILQRLFRFSSVIR Acetyl (Protein N-term) 1807.0291 0.029079065 725 P18859 ATP5J ATP synthase-coupling factor 6, mitochondrial no no 1 0 0 2 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 51.443 51.518 2 1 NaN NaN 10521000 17518000 10626 20379000 35621000 29473000 16866000 26997000 26509000 19669000 20559000 9795400 16357000 1116700 20724000 33677000 29408000 18387000 27354000 26335000 19512000 20017000 4 4 2 4 4 4 4 4 4 4 4 8327200 13636000 10626 15847000 33566000 27694000 15233000 21114000 20958000 15567000 16135000 7752800 12732000 960660 16187000 31719000 27334000 16588000 21634000 20900000 15433000 15715000 3 3 2 3 3 3 3 3 3 3 3 2194000 3882600 0 4531800 2054600 1778500 1633100 5882300 5551000 4101800 4423600 2042700 3625300 155990 4536100 1957900 2073900 1799800 5720300 5435700 4079400 4302200 1 1 0 1 1 1 1 1 1 1 1 2215600000 1573000000 642610000 13582 725 12549 71559;71560;71561 0 MIMATNRPDTLDPALLRPGR 2 Oxidation (M) 2269.1671 0.16710546 1357 P62333 PSMC6 26S protease regulatory subunit 10B yes yes 0 0 2 2 By MS/MS 8 0 1 1 44.774 44.929 4 0.013734 12046 20211116_3436_TMUAki_TMT10x_P_F8 44.577 38.797 1476300 2618900 0 3014900 3581000 4386300 2504600 2358300 3014400 2345600 2409600 1374400 2445200 134200 3068300 3405400 4338300 2612600 2499700 3022900 2291400 2343200 1 1 0 1 1 1 1 1 1 1 1 1476300 2618900 0 3014900 3581000 4386300 2504600 2358300 3014400 2345600 2409600 1374400 2445200 134200 3068300 3405400 4338300 2612600 2499700 3022900 2291400 2343200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 269600000 269600000 0 13583 1357 12550 71562 86440 86440 1819;1820 1 MIMATNRPDTLDPALLRPGR Oxidation (M) 2253.1722 0.17219084 1357 P62333 PSMC6 26S protease regulatory subunit 10B yes yes 0 0 1 2 By matching By MS/MS 1.5 0.5 1 1 1 1 49.733 49.669 4 1.1799E-06 14080 20211116_3440_TMUAki_TMT10x_S_F2 89.831 74.195 2581000 4445600 25444 4850000 2499100 2524500 2548000 3109900 2822700 3031100 3536800 2403400 4149700 234680 4884500 2398900 2728400 2590500 3130000 2885000 2963600 3389700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2581000 4445600 25444 4850000 2499100 2524500 2548000 3109900 2822700 3031100 3536800 2403400 4149700 234680 4884500 2398900 2728400 2590500 3130000 2885000 2963600 3389700 2 2 1 2 2 2 2 2 2 2 2 650050000 144970000 505080000 13584 1357 12550 71563;71564 86441;86442 86442 1819;1820 2 MIMDTAGNDPYCFVEFHEHR 2 Oxidation (M) 2500.0246 0.024599906 888 P31483;P31483-2;P31483-3 TIA1 Nucleolysin TIA-1 isoform p40 yes no 0 0 2 0 By MS/MS 3 0 1 1 49.996 49.922 4 3.6013E-05 15959 20211116_3430_TMUAki_TMT10x_P_F3 76.761 74.843 1245400 2027200 0 2228800 1887400 2543800 1401700 1687900 1712900 1296500 1615100 1159400 1892300 92560 2264300 1796200 2552800 1456800 1747600 1725500 1282400 1561100 1 1 0 1 1 1 1 1 1 1 1 1245400 2027200 0 2228800 1887400 2543800 1401700 1687900 1712900 1296500 1615100 1159400 1892300 92560 2264300 1796200 2552800 1456800 1747600 1725500 1282400 1561100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 394020000 394020000 0 13585 888 12551 71565 86443 86443 1072;1073 1 MIMQDKLEK 2 Oxidation (M) 1166.5675 0.56753078 916;2345;442 P34932;Q92598;Q92598-2;Q92598-3;Q92598-4;O95757 HSPA4;HSPH1;HSPA4L Heat shock 70 kDa protein 4;Heat shock protein 105 kDa;Heat shock 70 kDa protein 4L no no 0 0 2 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 35.417 35.488 3 0.075939 8992 20211116_3433_TMUAki_TMT10x_P_F5 45.598 8.1225 944490 1574100 8720.3 1506500 2072800 2040900 1278100 1215500 1324500 1073400 1315300 879460 1468500 100730 1549700 1968000 2027600 1339400 1273200 1345100 1054200 1269100 4 4 3 4 4 4 4 4 4 4 4 838700 1409000 7916.5 1325800 1956900 1947400 1164500 1120600 1239500 995010 1180600 780970 1314400 92573 1367700 1856900 1927000 1224900 1177300 1255600 976950 1140700 2 2 2 2 2 2 2 2 2 2 2 105790 165130 803.81 180720 115950 93413 113620 94944 84949 78352 134670 98496 154140 8160.9 181960 111070 100580 114490 95959 89440 77207 128380 2 2 1 2 2 2 2 2 2 2 2 102830000 82924000 19910000 13586 916;2345;442 12552 71566;71567;71568;71569 86444;86445 86444 326;327 2 MINLSVPDTIDER Oxidation (M) 1517.7396 0.73955814 658;657 P13796;P13797;P13797-3;P13797-2 LCP1;PLS3 Plastin-2;Plastin-3 no no 0 0 1 0 By MS/MS By MS/MS 4 0 2 1 1 58.657 58.679 2 3.288E-09 18417 20211116_3442_TMUAki_TMT10x_S_F4 136.94 112.1 4515300 7603900 15176 7793900 6281500 8674700 5292400 7783000 7518000 6902100 6982300 4203600 7096000 322240 7950800 5993100 8762900 5488900 7931900 7531800 6777200 6752200 2 2 1 2 2 2 2 2 2 2 2 2248600 3880100 15176 3972300 3914000 6163100 3352300 3626900 3770600 3299800 3444400 2093800 3620900 223900 4078600 3739700 6086400 3442700 3805800 3806100 3236200 3332800 1 1 1 1 1 1 1 1 1 1 1 2266700 3723900 0 3821600 2367500 2511600 1940200 4156100 3747300 3602300 3537900 2109800 3475100 98348 3872100 2253400 2676400 2046300 4126000 3725800 3541000 3419400 1 1 0 1 1 1 1 1 1 1 1 721350000 360560000 360790000 13587 657;658 12553 71570;71571 86446;86447 86447 719 2 MINLSVPDTIDER Unmodified 1501.7446 0.74464352 658;657 P13796;P13797;P13797-3;P13797-2 LCP1;PLS3 Plastin-2;Plastin-3 no no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 66.332 66.396 2 5.0934E-08 21080 20211116_3431_TMUAki_TMT10x_P_F4 112.02 69.306 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13588 657;658 12553 71572;71573 86448;86449 86448 2 MINTDLSR Oxidation (M) 964.46478 0.46478027 953 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 1 0 By MS/MS By MS/MS 4 0.707 1 2 1 1 3 33.743 33.695 2 0.017601 6747 20211116_3444_TMUAki_TMT10x_S_F5 78.77 18.088 1533000 2626300 26130 2812800 3106800 2641000 1951700 1701800 1824900 1476800 2149000 1427500 2451300 161280 2853800 2950700 2680000 2036100 1771000 1873600 1451600 2063000 3 3 2 3 3 3 3 3 3 3 3 968880 1683200 20602 1736800 2567200 2140500 1370400 1099600 1190500 968090 1372000 902280 1570800 121910 1774100 2432700 2132300 1447000 1166600 1225500 950900 1317900 1 1 1 1 1 1 1 1 1 1 1 564130 943140 5527.5 1075900 539550 500480 581300 602270 634410 508680 777030 525210 880540 39367 1079700 517930 547640 589100 604410 648140 500660 745150 2 2 1 2 2 2 2 2 2 2 2 86567000 55114000 31454000 13589 953 12554 71574;71575;71576;71577 86450;86451;86452 86452 1209 3 MINTDLSR Unmodified 948.46987 0.46986564 953 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 0 0 By MS/MS 4 0 1 1 40.259 40.322 2 0.085693 10507 20211116_3431_TMUAki_TMT10x_P_F4 59.368 29.021 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13590 953 12554 71578 86453 86453 1 MIPCDFLIPVQTQHPIR Oxidation (M) 2080.0598 0.059786845 522 P06744;P06744-2 GPI Glucose-6-phosphate isomerase yes no 0 0 1 0 By MS/MS 4.5 3.5 1 1 2 62.901 62.991 3 0.00014174 19410 20211116_3436_TMUAki_TMT10x_P_F8 73.983 44.176 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13591 522 12555 71579;71580 86454;86455 86455 436 2 MIPCDFLIPVQTQHPIR Unmodified 2064.0649 0.064872223 522 P06744;P06744-2 GPI Glucose-6-phosphate isomerase yes no 0 0 0 0 By MS/MS By MS/MS 2 0 3 2 1 69.86 69.618 3 5.9045E-14 23618 20211116_3429_TMUAki_TMT10x_P_F2 141 124.88 4273400 7335900 179120 6957000 4856600 5741100 5353200 4302100 3684200 4322200 5469100 3980300 6843700 529400 7105900 4680100 5891300 5352400 4447300 3884400 4220500 5220600 3 3 3 3 3 3 3 3 3 3 3 1397200 2393400 48195 2249100 1407700 2600100 1797400 1353800 1498000 1459200 1814700 1301300 2232800 160900 2309900 1362500 2599200 1793500 1442500 1548300 1420800 1740700 1 1 1 1 1 1 1 1 1 1 1 2876200 4942500 130920 4707900 3448900 3140900 3555900 2948300 2186300 2863000 3654400 2679000 4611000 368500 4795900 3317500 3292100 3558900 3004800 2336200 2799700 3479800 2 2 2 2 2 2 2 2 2 2 2 1264400000 598720000 665670000 13592 522 12555 71581;71582;71583 86456;86457;86458;86459 86456 4 MIPCDFLIPVQTQHPIRK Oxidation (M) 2208.1547 0.15474986 522 P06744;P06744-2 GPI Glucose-6-phosphate isomerase yes no 0 0 1 1 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 4 3 57.138 56.958 4 1.9358E-17 17121 20211116_3440_TMUAki_TMT10x_S_F2 149.3 134.83 26863000 41600000 225530 45856000 33396000 39210000 25931000 34059000 36013000 31412000 35018000 25013000 38833000 1562600 46381000 31847000 40239000 27006000 34809000 36160000 30787000 33811000 7 7 3 7 7 7 7 7 7 7 7 13079000 19256000 110410 22350000 16177000 24936000 13650000 14836000 18423000 15297000 15877000 12179000 17979000 771680 22621000 15455000 25017000 14126000 15608000 18443000 14921000 15394000 3 3 1 3 3 3 3 3 3 3 3 13783000 22344000 115130 23506000 17218000 14274000 12281000 19223000 17590000 16115000 19141000 12834000 20854000 790950 23760000 16392000 15222000 12880000 19201000 17717000 15866000 18417000 4 4 2 4 4 4 4 4 4 4 4 9722100000 5321300000 4400800000 13593 522 12556 71584;71585;71586;71587;71588;71589;71590 86460;86461;86462;86463;86464;86465;86466 86463 436 7 MIPCDFLIPVQTQHPIRK Unmodified 2192.1598 0.15983524 522 P06744;P06744-2 GPI Glucose-6-phosphate isomerase yes no 0 0 0 1 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 62.72 62.507 4 2.4461E-17 22245 20211116_3441_TMUAki_TMT10x_S_F3 145.55 128.14 58795000 90760000 605520 103700000 69825000 71781000 58697000 41973000 37635000 39775000 64443000 54746000 84737000 5262600 104400000 66687000 74425000 59469000 44113000 40160000 38937000 61336000 10 10 8 10 10 10 10 10 10 10 10 36394000 52599000 175300 62553000 45126000 54663000 38354000 24877000 22784000 23453000 38597000 33885000 49117000 3013000 62993000 43091000 55505000 38777000 26754000 24422000 22964000 36744000 5 5 4 5 5 5 5 5 5 5 5 22401000 38161000 430230 41150000 24699000 17118000 20342000 17095000 14851000 16323000 25846000 20861000 35620000 2249600 41409000 23596000 18920000 20692000 17359000 15739000 15973000 24593000 5 5 4 5 5 5 5 5 5 5 5 12913000000 7084100000 5828400000 13594 522 12556 71591;71592;71593;71594;71595;71596 86467;86468;86469;86470;86471;86472;86473;86474;86475;86476 86473 10 MIPICPVVSFTYVPSR Acetyl (Protein N-term) 1906.9685 0.96851222 2513 Q96KR1 ZFR Zinc finger RNA-binding protein yes yes 1 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 82.802 82.779 2 5.268E-21 30351 20211116_3441_TMUAki_TMT10x_S_F3 150.06 134.17 1147100 1911400 15493 1682500 1169700 2140400 1357000 1226900 1218300 1390200 1667900 1068100 1782700 102820 1739500 1126800 2131700 1362400 1298400 1261400 1351000 1595000 3 3 2 3 3 3 3 3 3 3 3 951050 1595900 2682.6 1359000 958610 1860000 1123800 1003200 986880 1161000 1373300 885490 1488300 74417 1410600 923010 1844700 1127100 1067900 1023700 1127400 1312800 2 2 1 2 2 2 2 2 2 2 2 196030 315490 12810 323560 211120 280370 233200 223680 231410 229210 294550 182610 294420 28402 328870 203760 287010 235330 230450 237740 223630 282180 1 1 1 1 1 1 1 1 1 1 1 255730000 182030000 73699000 13595 2513 12557 71597;71598;71599;71600 86477;86478;86479;86480 86480 4 MIQDGKGDVTITNDGATILK Oxidation (M) 2105.0674 0.067434223 1147 P50991 CCT4 T-complex protein 1 subunit delta yes yes 0 0 1 1 By MS/MS By MS/MS 5.62 0.696 4 3 1 3 5 54.685 54.877 3;4 4.9179E-05 15413 20211116_3434_TMUAki_TMT10x_P_F6 77.668 60.738 123140000 198730000 3861100 227840000 162890000 184380000 117360000 240020000 250210000 197090000 205760000 114680000 185550000 13430000 229730000 155220000 191760000 125540000 239940000 247150000 194260000 199870000 16 16 11 16 16 16 16 16 16 16 16 34363000 53296000 539020 58964000 78078000 103020000 49631000 70413000 75032000 55013000 55086000 31996000 49752000 3566100 60411000 74157000 101500000 52617000 72776000 74513000 54363000 53757000 5 5 3 5 5 5 5 5 5 5 5 88782000 145440000 3322100 168870000 84817000 81357000 67729000 169600000 175180000 142080000 150670000 82685000 135800000 9863500 169310000 81063000 90262000 72921000 167160000 172640000 139890000 146110000 11 11 8 11 11 11 11 11 11 11 11 9242700000 3993400000 5249200000 13596 1147 12558 71601;71602;71603;71604;71605;71606;71607;71608 86481;86482;86483;86484;86485;86486;86487;86488;86489;86490;86491;86492;86493 86483 1522 13 MIQDGKGDVTITNDGATILK Unmodified 2089.0725 0.072519601 1147 P50991 CCT4 T-complex protein 1 subunit delta yes yes 0 0 0 1 By MS/MS By MS/MS 6 0.775 3 4 3 4 6 59.583 59.812 3;4 2.0399E-41 17428 20211116_3434_TMUAki_TMT10x_P_F6 204.82 178.23 82660000 134350000 907500 153520000 106710000 94646000 85499000 65772000 54515000 67937000 99883000 76970000 125440000 7815000 154380000 101830000 99401000 86875000 68395000 58425000 66262000 94949000 14 14 8 14 14 14 14 14 14 14 14 30295000 47807000 406390 55234000 52669000 55788000 42152000 22508000 18070000 23186000 35683000 28210000 44636000 3189500 55831000 50260000 56051000 42561000 24584000 20062000 22617000 33877000 5 5 3 5 5 5 5 5 5 5 5 52366000 86547000 501110 98282000 54041000 38858000 43347000 43264000 36445000 44751000 64200000 48760000 80802000 4625500 98546000 51565000 43351000 44314000 43810000 38363000 43645000 61072000 9 9 5 9 9 9 9 9 9 9 9 11130000000 5326700000 5803100000 13597 1147 12558 71609;71610;71611;71612;71613;71614;71615;71616;71617;71618 86494;86495;86496;86497;86498;86499;86500;86501;86502;86503;86504;86505;86506;86507 86496 14 MIQPSASGSLVGR Oxidation (M) 1317.6711 0.67108465 340 O75496 GMNN Geminin yes yes 0 0 1 0 By MS/MS 7 0 1 1 36.43 36.868 2 4.3711E-09 10104 20211116_3435_TMUAki_TMT10x_P_F7 125.24 71.084 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13598 340 12559 71619 86508 86508 246 1 MISAAQLLDELMGR Acetyl (Protein N-term);2 Oxidation (M) 1620.7851 0.78512813 414 O95232;O95232-2 LUC7L3 Luc7-like protein 3 yes no 1 0 2 0 By MS/MS By MS/MS 2.75 0.829 2 1 1 1 3 81.709 81.696 2 2.5045E-14 29906 20211116_3441_TMUAki_TMT10x_S_F3 89.032 74.734 4172600 6585700 127210 6970000 4380900 4955400 4866000 3278900 3282600 3857000 5062600 3885900 6146600 445300 7053300 4219100 5134800 4861400 3435700 3472000 3743200 4828600 4 4 3 4 4 4 4 4 4 4 4 1069900 1620900 39847 1788600 1014300 1655500 1003800 841190 890940 1001300 1264200 996440 1513100 125060 1810800 974700 1676500 1015200 901150 924560 971360 1208000 1 1 1 1 1 1 1 1 1 1 1 3102700 4964800 87365 5181400 3366700 3299800 3862200 2437700 2391700 2855700 3798400 2889400 4633500 320240 5242500 3244400 3458300 3846100 2534500 2547400 2771800 3620700 3 3 2 3 3 3 3 3 3 3 3 1704700000 405550000 1299200000 13599 414 12560 71620;71621;71622;71623 86509;86510;86511;86512 86511 310;311 4 MISAAQLLDELMGR Acetyl (Protein N-term);Oxidation (M) 1604.7902 0.79021351 414 O95232;O95232-2 LUC7L3 Luc7-like protein 3 yes no 1 0 1 0 By MS/MS By MS/MS 3.83 1.21 1 1 3 1 2 4 84.127 84.126 2 1.8411E-14 30837 20211116_3441_TMUAki_TMT10x_S_F3 82.954 64.729 1070300 1816500 5261.5 1722000 1295200 1456600 1401800 1114100 977910 1115600 1398400 996490 1694600 78814 1759400 1243700 1492600 1403200 1150100 1028300 1089500 1336000 4 4 2 4 4 4 4 4 4 4 4 323580 573240 0 572670 334460 540630 424380 260290 233390 267980 355160 301220 534890 19841 583780 322490 546440 419850 279030 250110 261410 338840 1 1 0 1 1 1 1 1 1 1 1 746770 1243200 5261.5 1149300 960730 916010 977370 853790 744520 847650 1043200 695270 1159700 58973 1175600 921230 946160 983310 871040 778210 828120 997120 3 3 2 3 3 3 3 3 3 3 3 233680000 104050000 129640000 13600 414 12560 71624;71625;71626;71627;71628;71629 86513;86514;86515;86516 86514 310;311 4 MISDAIPELK Unmodified 1115.5896 0.58964643 989 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 66.037 66.056 2 0.0056421 21005 20211116_3431_TMUAki_TMT10x_P_F4 68.657 38.087 67616000 106120000 66119 101510000 64462000 117350000 61468000 50210000 55154000 73495000 61009000 62944000 99002000 4014700 104120000 61634000 117060000 62311000 55136000 56594000 70819000 58671000 4 4 1 4 4 4 4 4 4 4 4 52129000 78509000 66119 74203000 47561000 98071000 43047000 37630000 41876000 55276000 44094000 48530000 73241000 3308700 76360000 45428000 97078000 43864000 41838000 42732000 53259000 42467000 3 3 1 3 3 3 3 3 3 3 3 15487000 27608000 0 27311000 16901000 19279000 18421000 12581000 13278000 18218000 16915000 14415000 25761000 706000 27763000 16205000 19985000 18447000 13298000 13862000 17560000 16204000 1 1 0 1 1 1 1 1 1 1 1 1693700000 922850000 770820000 13601 989 12561 71630;71631;71632;71633;71634;71635 86517;86518;86519;86520;86521;86522 86517 6 MISGMYLGEIVR Oxidation (M) 1383.689 0.6890429 730;1188 P19367;P19367-4;P19367-2;P19367-3;P52790;P52789 HK1;HK3;HK2 Hexokinase-1;Hexokinase-3;Hexokinase-2 no no 0 0 1 0 By MS/MS 7 0 1 1 63.69 64.361 2 0.012698 21193 20211116_3435_TMUAki_TMT10x_P_F7 62.869 45.356 4996400 9426900 84324 7431600 5968800 11815000 6424000 7371100 5607300 6364600 6842600 4652800 8788900 506440 7787900 5739700 11666000 6467000 7688600 5784000 6257400 6562500 1 1 1 1 1 1 1 1 1 1 1 4996400 9426900 84324 7431600 5968800 11815000 6424000 7371100 5607300 6364600 6842600 4652800 8788900 506440 7787900 5739700 11666000 6467000 7688600 5784000 6257400 6562500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 352300000 352300000 0 13602 730;1188 12562 71636 86523 86523 838 1 MISLTDTQK Acetyl (Protein N-term);Oxidation (M) 1093.5325 0.53252548 3282 Q9Y3E0 GOLT1B Vesicle transport protein GOT1B yes yes 1 0 1 0 By MS/MS 3 0 1 1 51.441 51.319 2 0.011611 16577 20211116_3430_TMUAki_TMT10x_P_F3 66.351 49.424 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13603 3282 12563 71637 86524 86524 3246 1 MITSAAGIISLLDEDEPQLK Unmodified 2143.1082 0.10823641 2575 Q99460;Q99460-2 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 1.66 1 2 1 1 2 1 4 4 81.307 81.295 3 4.183E-18 26345 20211116_3444_TMUAki_TMT10x_S_F5 141.6 118.5 5472000 8377400 52773 8768500 6216200 6236600 6627000 3530100 2943300 3978300 6010400 5094900 7818500 464130 8879900 5970700 6448800 6586500 3739100 3264300 3867000 5703100 4 4 2 4 4 4 4 4 4 4 4 2238200 3372500 48067 3384200 2128700 3133100 2264500 1771700 1440400 1917500 2372800 2084100 3147000 190910 3447900 2044900 3176700 2264400 1874400 1534500 1866700 2260100 2 2 1 2 2 2 2 2 2 2 2 3233700 5004900 4706.1 5384300 4087600 3103500 4362500 1758400 1502900 2060800 3637600 3010900 4671500 273220 5432000 3925800 3272100 4322100 1864700 1729800 2000200 3443000 2 2 1 2 2 2 2 2 2 2 2 2618900000 925100000 1693800000 13604 2575 12564 71638;71639;71640;71641;71642;71643;71644;71645 86525;86526;86527;86528;86529;86530 86528 6 MITSAAGIISLLDEDEPQLK Acetyl (Protein N-term);Oxidation (M) 2201.1137 0.11371571 2575 Q99460;Q99460-2 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 1 0 1 0 By MS/MS By MS/MS 2.4 1.02 1 2 1 1 1 4 83.233 83.222 3 9.7948E-42 30511 20211116_3441_TMUAki_TMT10x_S_F3 120.24 103.16 2538400 4400800 20134 3719800 3080500 4159600 3046800 2702600 2938000 3397700 3432500 2363300 4103900 196510 3849500 2951500 4177700 3088900 2842100 3011300 3289700 3295900 4 4 3 4 4 4 4 4 4 4 4 1151300 1901800 0 1515400 1154700 2247400 1150400 1086900 1162600 1638600 1433200 1071600 1773100 55196 1584200 1104400 2218300 1167500 1180100 1191900 1577600 1374200 1 1 0 1 1 1 1 1 1 1 1 1387100 2499100 20134 2204400 1925900 1912200 1896400 1615700 1775400 1759100 1999200 1291700 2330800 141310 2265300 1847100 1959400 1921400 1662000 1819400 1712200 1921700 3 3 3 3 3 3 3 3 3 3 3 609790000 178880000 430920000 13605 2575 12564 71646;71647;71648;71649;71650 86531;86532;86533;86534 86533 2805 4 MITSAAGIISLLDEDEPQLK Oxidation (M) 2159.1032 0.10315103 2575 Q99460;Q99460-2 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 1 0 By matching By MS/MS 4.6 1.2 1 2 2 2 3 79.999 79.983 3 3.4573E-13 27077 20211116_3442_TMUAki_TMT10x_S_F4 133.78 117.48 9034900 15703000 134410 13699000 12591000 10999000 13149000 9033700 9528300 9551600 11359000 8413100 14645000 883540 14077000 12092000 11328000 13197000 9299500 9916800 9307300 10901000 4 4 3 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9034900 15703000 134410 13699000 12591000 10999000 13149000 9033700 9528300 9551600 11359000 8413100 14645000 883540 14077000 12092000 11328000 13197000 9299500 9916800 9307300 10901000 4 4 3 4 4 4 4 4 4 4 4 3927100000 1133300000 2793900000 13606 2575 12564 71651;71652;71653;71654;71655 86535;86536;86537;86538 86536 2805 4 MIVDPVEPHGEMK 2 Oxidation (M) 1512.6953 0.69525049 1615 Q13263;Q13263-2 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 2 0 By MS/MS By MS/MS 3 0.894 2 1 2 2 3 37.05 37.005 3 0.0013124 10286 20211116_3429_TMUAki_TMT10x_P_F2 72.659 60.683 2789700 3955900 31667 4680500 5952500 5815500 3269700 3637700 4556600 3361100 4124700 2597600 3694000 289570 4740700 5641000 5805500 3496700 3800200 4564000 3294000 3992300 5 5 4 5 5 5 5 5 5 5 5 2184500 2969600 23492 3551800 5371400 5232700 2667700 2832900 3630300 2660000 3221900 2034100 2773100 232110 3607400 5082700 5173100 2877100 2996200 3636600 2605000 3120700 3 3 2 3 3 3 3 3 3 3 3 605210 986270 8174.5 1128800 581110 582750 602040 804820 926370 701090 902820 563570 920820 57457 1133300 558220 632330 619620 803970 927400 688990 871650 2 2 2 2 2 2 2 2 2 2 2 720070000 481850000 238220000 13607 1615 12565 71656;71657;71658;71659;71660 86539;86540;86541;86542;86543 86539 2165;2166 5 MIVDPVEPHGEMK Oxidation (M) 1496.7003 0.70033587 1615 Q13263;Q13263-2 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 1 0 By MS/MS By MS/MS 3.67 0.745 3 2 1 2 4 42.627 42.601 3 2.8689E-06 11535 20211116_3431_TMUAki_TMT10x_P_F4 107.53 92.863 10934000 17984000 180670 23185000 19960000 14671000 11553000 11706000 12595000 10809000 15857000 10182000 16800000 1198600 23157000 18938000 15404000 12190000 12024000 12883000 10593000 15196000 9 9 7 9 9 9 9 9 9 9 9 4671300 7204900 132060 9754000 13666000 9897200 5938500 4352200 4859800 4303000 6457600 4350500 6732500 636340 9772800 12917000 9949200 6394300 4703400 5047900 4204600 6180000 3 3 3 3 3 3 3 3 3 3 3 6263100 10779000 48611 13431000 6294700 4773700 5614000 7353500 7734900 6505700 9399800 5831900 10068000 562260 13385000 6021300 5455100 5795800 7320900 7835200 6388700 9016100 6 6 4 6 6 6 6 6 6 6 6 1060500000 531770000 528780000 13608 1615 12565 71661;71662;71663;71664;71665;71666 86544;86545;86546;86547;86548;86549;86550;86551 86546 2165;2166 8 MIVDPVEPHGEMK Unmodified 1480.7054 0.70542124 1615 Q13263;Q13263-2 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 47.582 47.743 3 9.1276E-05 13441 20211116_3431_TMUAki_TMT10x_P_F4 92.039 77.008 11788000 17693000 81772 21336000 18382000 16399000 12942000 15418000 14056000 13174000 16330000 10975000 16523000 1068100 21435000 17488000 16989000 13447000 15658000 14331000 12959000 15683000 4 4 2 4 4 4 4 4 4 4 4 6853400 9486100 49134 11236000 13769000 12918000 9002100 8429400 7744000 7224900 9300300 6381300 8858100 668720 11364000 13082000 12955000 9341500 8760900 7988400 7105900 8923400 2 2 1 2 2 2 2 2 2 2 2 4934100 8207300 32637 10100000 4613000 3480900 3940300 6988600 6311700 5949400 7030100 4594100 7665400 399360 10071000 4405900 4033200 4105400 6897400 6342800 5853300 6759400 2 2 1 2 2 2 2 2 2 2 2 1195100000 893100000 301990000 13609 1615 12565 71667;71668;71669 86552;86553;86554;86555 86552 4 MIVGTLK Oxidation (M) 776.44661 0.44661101 443 O95777 LSM8 U6 snRNA-associated Sm-like protein LSm8 yes yes 0 0 1 0 By MS/MS By MS/MS 8 0 2 1 1 42.674 42.803 2 0.07457 10637 20211116_3447_TMUAki_TMT10x_S_F8 68.312 35.192 2949700 4824500 9254.3 4679100 3979200 4448100 3420300 3688200 3715000 3218300 4732400 2746600 4501200 267600 4780200 3801900 4528600 3507700 3774200 3802600 3162600 4533700 2 2 2 2 2 2 2 2 2 2 2 1526100 2461100 3927 2432500 2545800 3164800 1864700 1782500 1872300 1645800 2416800 1421000 2296400 144470 2494500 2424100 3147800 1927300 1878000 1923800 1613000 2314500 1 1 1 1 1 1 1 1 1 1 1 1423600 2363300 5327.2 2246600 1433400 1283300 1555600 1905700 1842700 1572500 2315700 1325600 2204800 123130 2285700 1377800 1380800 1580500 1896200 1878800 1549500 2219200 1 1 1 1 1 1 1 1 1 1 1 154470000 120300000 34171000 13610 443 12566 71670;71671 86556 86556 328 1 MIVVLGEIGGTEEYK Oxidation (M) 1652.8331 0.83312418 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 1 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 67.74 67.81 3 0.0057946 21909 20211116_3433_TMUAki_TMT10x_P_F5 61.409 39.536 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13611 1200 12567 71672;71673;71674 86557;86558;86559 86558 1606 3 MIYASSK Unmodified 798.39458 0.39457544 787;1282;3229 P23528;P60981;P60981-2;Q9Y281;Q9Y281-3 CFL1;DSTN;CFL2 Cofilin-1;Destrin;Cofilin-2 no no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 38.833 39.263 2 0.0019961 9803 20211116_3436_TMUAki_TMT10x_P_F8 131.04 115.89 5080400 9440800 53899 7693600 7789000 7569500 6590800 2830600 2685900 2968400 5786300 4730700 8802800 499800 7970300 7441000 7612500 6627100 3121200 3013400 2893400 5485800 4 4 3 4 4 4 4 4 4 4 4 3504600 6489300 25848 5329100 5914000 6403000 4929900 1972900 1903600 2099400 3921900 3263300 6050800 338830 5534600 5646900 6357200 4958400 2233300 2140600 2045200 3720900 2 2 1 2 2 2 2 2 2 2 2 1575700 2951600 28051 2364500 1875000 1166500 1660900 857680 782330 869000 1864400 1467400 2751900 160970 2435700 1794100 1255300 1668700 887960 872720 848240 1765000 2 2 2 2 2 2 2 2 2 2 2 369040000 200770000 168270000 13612 787;1282;3229 12568 71675;71676;71677;71678 86560;86561;86562;86563 86561 4 MIYASSK Oxidation (M) 814.38949 0.38949006 787;1282;3229 P23528;P60981;P60981-2;Q9Y281;Q9Y281-3 CFL1;DSTN;CFL2 Cofilin-1;Destrin;Cofilin-2 no no 0 0 1 0 By MS/MS By MS/MS 6.83 1.07 1 1 2 2 4 2 33.304 33.561 2 0.055364 8885 20211116_3435_TMUAki_TMT10x_P_F7 71.296 52.605 2017100 3579400 0 3084600 3327700 3606700 2457900 1668900 1729400 1606900 2467200 1877800 3338100 152060 3189600 3166900 3598600 2516000 1792800 1817400 1571900 2357100 6 6 0 6 6 6 6 6 6 6 6 1746000 3093900 0 2669100 3038800 3407600 2191200 1534900 1605300 1467200 2190000 1625500 2885300 139470 2763900 2890900 3383800 2248800 1653000 1679500 1435800 2094500 4 4 0 4 4 4 4 4 4 4 4 271100 485570 0 415550 288950 199140 266640 134030 124070 139630 277130 252360 452830 12587 425640 276040 214760 267210 139720 137890 136140 262600 2 2 0 2 2 2 2 2 2 2 2 145220000 116290000 28937000 13613 787;1282;3229 12568 71679;71680;71681;71682;71683;71684 86564;86565;86566;86567;86568 86564 929 5 MKAEFFADVVPAVR Unmodified 1578.8228 0.82283426 3126 Q9UHY7 ENOPH1 Enolase-phosphatase E1 yes yes 0 0 0 1 By MS/MS 1 0 2 2 67.818 67.612 3 1.7388E-06 23205 20211116_3439_TMUAki_TMT10x_S_F1 92.773 72.666 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13614 3126 12569 71685;71686 86569;86570 86569 2 MKDTDSEEEIREAFR Oxidation (M) 1870.8367 0.83670601 599 P0DP25;P0DP24;P0DP23 yes no 0 0 1 2 By MS/MS By MS/MS 3 1.22 2 4 4 4 2 8 8 39.385 39.352 3;4 2.3725E-19 10291 20211116_3440_TMUAki_TMT10x_S_F2 166.62 152.34 30297000 48311000 202300 63855000 66021000 63923000 35850000 45177000 47161000 36804000 46967000 28210000 45137000 3045100 64046000 62548000 64695000 38292000 46629000 47476000 36290000 45313000 23 23 11 23 23 23 23 23 23 23 23 22463000 35251000 134580 46172000 60434000 58714000 31710000 31929000 33116000 26390000 33964000 20915000 32934000 2390300 46520000 57225000 58438000 33710000 33649000 33658000 26002000 32737000 12 12 5 12 12 12 12 12 12 12 12 7833800 13060000 67718 17683000 5587300 5209100 4139700 13249000 14045000 10414000 13003000 7294400 12204000 654770 17526000 5323300 6256700 4581400 12980000 13818000 10288000 12576000 11 11 6 11 11 11 11 11 11 11 11 9221300000 6342200000 2879100000 13615 599 12570 71687;71688;71689;71690;71691;71692;71693;71694;71695;71696;71697;71698;71699;71700;71701;71702 86571;86572;86573;86574;86575;86576;86577;86578;86579;86580;86581;86582;86583;86584;86585;86586;86587;86588;86589;86590;86591;86592;86593;86594 86585 580 24 MKDTDSEEEIREAFR Unmodified 1854.8418 0.84179138 599 P0DP25;P0DP24;P0DP23 yes no 0 0 0 2 By MS/MS By MS/MS 3.36 0.881 2 4 4 1 5 6 45.619 45.581 3;4 2.0603E-43 14165 20211116_3430_TMUAki_TMT10x_P_F3 260.07 244.88 73767000 117090000 918290 178180000 108440000 80487000 67664000 46392000 37349000 43300000 89902000 68689000 109480000 7177900 176000000 102990000 87255000 69828000 48796000 41187000 42417000 85098000 16 16 8 16 16 16 16 16 16 16 16 32769000 51420000 786560 76559000 79824000 62026000 47272000 19385000 16023000 18369000 38813000 30516000 48074000 3941900 76110000 75757000 63126000 48685000 21831000 18477000 17982000 36736000 8 8 5 8 8 8 8 8 8 8 8 40997000 65668000 131730 101620000 28613000 18461000 20392000 27007000 21325000 24931000 51089000 38173000 61409000 3236000 99890000 27229000 24128000 21143000 26965000 22710000 24435000 48362000 8 8 3 8 8 8 8 8 8 8 8 7707600000 4264700000 3442900000 13616 599 12570 71703;71704;71705;71706;71707;71708;71709;71710;71711;71712;71713 86595;86596;86597;86598;86599;86600;86601;86602;86603;86604;86605;86606;86607;86608;86609;86610;86611 86597 17 MKEEVPTALVEAHVR Oxidation (M) 1723.8927 0.89270474 2263 Q8TAQ2;Q8TAQ2-2;Q8TAQ2-3 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 0 0 1 1 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 40.139 40.209 4 2.534E-05 9642 20211116_3444_TMUAki_TMT10x_S_F5 98.421 86.256 3796900 6230900 52925 6524900 5662600 5662700 4926400 5658200 5298500 4766400 5546200 3535600 5815200 390240 6622800 5414300 5821800 5047100 5726400 5382800 4691800 5342500 4 4 4 4 4 4 4 4 4 4 4 2005900 3188700 41226 3295600 3880000 4140500 3151500 3209600 2919000 2641700 2968100 1868000 2975800 230970 3367200 3704500 4145000 3227600 3293300 2981500 2603400 2861700 2 2 2 2 2 2 2 2 2 2 2 1790900 3042100 11700 3229200 1782600 1522200 1774900 2448600 2379400 2124700 2578100 1667600 2839300 159270 3255600 1709800 1676800 1819500 2433100 2401300 2088400 2480800 2 2 2 2 2 2 2 2 2 2 2 485180000 115370000 369810000 13617 2263 12571 71714;71715 86612;86613;86614;86615 86614 2644 4 MKEIAEAYLGK Unmodified 1251.6533 0.65330932 615 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 1 By MS/MS By MS/MS 6.27 2.56 2 1 3 5 6 5 66.494 66.677 2;3 3.3196E-07 21944 20211116_3439_TMUAki_TMT10x_S_F1 137.84 107.78 185420000 275990000 1095200 312520000 228950000 193630000 188670000 86561000 71507000 104780000 186520000 172650000 257670000 16626000 314460000 218560000 202180000 189850000 93958000 81953000 101590000 176370000 12 12 6 12 12 12 12 12 12 12 12 84353000 121570000 588630 140740000 156110000 121010000 90503000 40855000 34667000 49515000 84230000 78543000 113510000 8247600 141930000 148050000 122690000 93503000 45843000 39470000 48002000 79719000 6 6 3 6 6 6 6 6 6 6 6 101070000 154420000 506600 171770000 72845000 72618000 98164000 45705000 36839000 55267000 102290000 94107000 144160000 8378900 172530000 70510000 79490000 96350000 48115000 42484000 53583000 96647000 6 6 3 6 6 6 6 6 6 6 6 17681000000 9549900000 8130800000 13618 615 12572 71716;71717;71718;71719;71720;71721;71722;71723;71724;71725;71726 86616;86617;86618;86619;86620;86621;86622;86623;86624;86625;86626;86627;86628 86623 13 MKEIAEAYLGK Oxidation (M) 1267.6482 0.64822394 615 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 1 1 By MS/MS By MS/MS 5.27 2.34 2 1 2 2 2 2 6 5 48.864 49.026 3 0.0014067 13704 20211116_3436_TMUAki_TMT10x_P_F8 79.089 59.511 135860000 214610000 1613100 214150000 224910000 241370000 157260000 175980000 203540000 168730000 186440000 126500000 200250000 12865000 218910000 213970000 242740000 164480000 182010000 204430000 165090000 180390000 20 20 10 20 20 20 20 20 20 20 20 83234000 129230000 901790 127130000 176380000 181570000 96806000 102570000 118870000 99168000 106980000 77500000 120580000 8372700 130650000 167140000 179840000 103040000 108170000 119540000 96993000 103570000 12 12 6 12 12 12 12 12 12 12 12 52622000 85376000 711350 87022000 48521000 59797000 60452000 73408000 84668000 69561000 79461000 48998000 79671000 4492400 88254000 46836000 62903000 61445000 73834000 84891000 68095000 76814000 8 8 4 8 8 8 8 8 8 8 8 11622000000 6389000000 5232900000 13619 615 12572 71727;71728;71729;71730;71731;71732;71733;71734;71735;71736;71737 86629;86630;86631;86632;86633;86634;86635;86636;86637;86638;86639;86640;86641;86642;86643;86644;86645;86646;86647;86648;86649;86650 86640 618 22 MKETAEAYLGKK Oxidation (M) 1383.7068 0.70680145 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 1 2 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 38.559 38.949 4 0.041991 9181 20211116_3447_TMUAki_TMT10x_S_F8 43.761 28.559 705110 1110400 2315.5 1087900 1045300 1083700 900450 1090700 1120700 953300 1013500 656540 1036100 64781 1111400 998700 1104400 927760 1104500 1126700 936700 980990 2 2 1 2 2 2 2 2 2 2 2 305300 490130 0 474990 617280 673070 412090 460280 455980 401130 448520 284260 457280 29082 488600 586680 668680 430080 476950 461700 394210 432900 1 1 0 1 1 1 1 1 1 1 1 399800 620300 2315.5 612910 427980 410600 488370 630430 664740 552170 564970 372270 578780 35699 622770 412020 435710 497670 627540 665000 542500 548090 1 1 1 1 1 1 1 1 1 1 1 70494000 29274000 41220000 13620 614 12573 71738;71739 86651 86651 613 1 MKETAENYLGHTAK Oxidation (M) 1607.7614 0.76135622 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 1 1 By MS/MS 5 0 1 1 34.149 34.326 4 0.025137 7136 20211116_3444_TMUAki_TMT10x_S_F5 48.323 28.313 389860 543120 3085.8 690980 372860 337180 367450 347850 405690 389830 514930 363020 507350 34960 689180 357570 365560 374180 354390 414920 379000 493350 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 389860 543120 3085.8 690980 372860 337180 367450 347850 405690 389830 514930 363020 507350 34960 689180 357570 365560 374180 354390 414920 379000 493350 1 1 1 1 1 1 1 1 1 1 1 16047000 0 16047000 13621 972 12574 71740 86652 86652 1239 1 MKFNPFVTSDR Oxidation (M) 1356.6496 0.64962092 1306 P61254;Q9UNX3 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 0 0 1 1 By MS/MS By MS/MS 3.5 2.69 2 2 2 2 4 4 45.959 45.894 3 3.3026E-06 13904 20211116_3429_TMUAki_TMT10x_P_F2 120.23 107.13 16340000 30707000 117300 21394000 41055000 55406000 26282000 61081000 63441000 41356000 37433000 15214000 28618000 1738200 22992000 38997000 54473000 28582000 61226000 61992000 41203000 36916000 10 10 5 10 10 10 10 10 10 10 10 10261000 19191000 92120 12843000 33921000 48744000 21766000 38847000 40438000 26364000 23531000 9554200 17884000 1260300 14088000 32225000 47220000 23292000 39623000 39722000 26262000 23223000 5 5 4 5 5 5 5 5 5 5 5 6079200 11516000 25180 8550400 7133500 6661300 4515400 22233000 23003000 14992000 13902000 5660100 10734000 477960 8904000 6772400 7252600 5289300 21603000 22270000 14941000 13692000 5 5 1 5 5 5 5 5 5 5 5 3793500000 2771000000 1022500000 13622 1306 12575 71741;71742;71743;71744;71745;71746;71747;71748 86653;86654;86655;86656;86657;86658;86659;86660;86661 86655 1764 9 MKFNPFVTSDR Unmodified 1340.6547 0.6547063 1306 P61254;Q9UNX3 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 0 0 0 1 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 53.937 53.851 3 2.0123E-11 17639 20211116_3430_TMUAki_TMT10x_P_F3 171.49 147.42 20583000 39441000 312150 25976000 39526000 47967000 26410000 27320000 19213000 25811000 31968000 19167000 36752000 2262700 27780000 37589000 47045000 27252000 28774000 20313000 25271000 30444000 5 5 5 5 5 5 5 5 5 5 5 10286000 18960000 180200 13178000 25267000 37080000 19227000 13699000 10139000 12752000 15574000 9578300 17670000 1230500 14210000 24087000 35775000 19537000 15079000 10905000 12493000 14856000 3 3 3 3 3 3 3 3 3 3 3 10297000 20481000 131950 12798000 14259000 10887000 7183500 13622000 9073900 13060000 16394000 9588800 19082000 1032200 13570000 13502000 11270000 7715000 13695000 9408200 12778000 15588000 2 2 2 2 2 2 2 2 2 2 2 1997800000 1231000000 766860000 13623 1306 12575 71749;71750;71751;71752;71753 86662;86663;86664;86665;86666;86667 86663 6 MKGDYFR Unmodified 915.42727 0.42727255 825;895 P27348;P31946;P31946-2 YWHAQ;YWHAB 14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed no no 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 35.961 36.159 3 0.02366 10677 20211116_3439_TMUAki_TMT10x_S_F1 72.038 49.133 3839900 5925900 62777 6932300 6599500 4008900 4369100 2357400 2165600 2408600 4660000 3575800 5533300 415290 6957300 6275600 4227200 4480100 2481700 2388000 2350200 4418100 5 5 4 5 5 5 5 5 5 5 5 1419000 2159500 8669.7 2491500 4155400 2365100 1803800 878040 778270 897090 1694700 1321300 2016300 163830 2516400 3925800 2383800 1920900 968350 869150 875360 1606500 2 2 1 2 2 2 2 2 2 2 2 2420900 3766400 54107 4440800 2444100 1643700 2565200 1479400 1387300 1511500 2965200 2254500 3517000 251460 4440900 2349800 1843400 2559200 1513400 1518900 1474800 2811600 3 3 3 3 3 3 3 3 3 3 3 121280000 61122000 60159000 13624 825;895 12576 71754;71755;71756;71757 86668;86669;86670;86671;86672 86670 5 MKGDYYR Oxidation (M) 947.4171 0.41710179 1395;1515;1331;896 P63104;P63104-2;P31947;P31947-2;P61981;Q04917 YWHAZ;SFN;YWHAG;YWHAH 14-3-3 protein zeta/delta;14-3-3 protein sigma;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein eta no no 0 0 1 1 By MS/MS 4.5 0.5 1 1 2 28.68 28.667 3 0.060634 6178 20211116_3433_TMUAki_TMT10x_P_F5 53.833 39.159 732850 1286000 18309 1022900 1149500 1421500 846180 701840 802320 664040 905780 682490 1199000 83658 1068100 1095700 1407400 872820 748780 821810 650090 870570 2 2 2 2 2 2 2 2 2 2 2 732850 1286000 18309 1022900 1149500 1421500 846180 701840 802320 664040 905780 682490 1199000 83658 1068100 1095700 1407400 872820 748780 821810 650090 870570 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42165000 42165000 0 13625 1395;896;1331;1515 12577 71758;71759 86673 86673 1099 1 MKLDYILGLK Unmodified 1192.689 0.68896654 1054 P46781 RPS9 40S ribosomal protein S9 yes yes 0 0 0 1 By MS/MS By MS/MS 3.25 1.09 1 2 1 2 2 74.586 74.471 2;3 7.3633E-08 25432 20211116_3429_TMUAki_TMT10x_P_F2 121.02 97.035 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13626 1054 12578 71760;71761;71762;71763 86674;86675;86676;86677 86674 4 MKLDYILGLK Oxidation (M) 1208.6839 0.68388117 1054 P46781 RPS9 40S ribosomal protein S9 yes yes 0 0 1 1 By MS/MS By MS/MS 2.5 0.5 4 4 6 2 68.671 68.546 2;3 0.00078447 24933 20211116_3441_TMUAki_TMT10x_S_F3 81.92 59.722 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13627 1054 12578 71764;71765;71766;71767;71768;71769;71770;71771 86678;86679;86680;86681;86682;86683;86684;86685 86685 1364 8 MKLNISFPATGCQK Oxidation (M) 1609.7956 0.79563323 1365 P62753 RPS6 40S ribosomal protein S6 yes yes 0 0 1 1 By MS/MS By MS/MS 3 0 2 1 1 50.891 50.66 3 0.01218 17384 20211116_3441_TMUAki_TMT10x_S_F3 57.414 38.581 2559200 5314900 90917 3990300 5739200 9080900 3637300 11155000 11295000 7461100 5999500 2383500 4954400 341440 4240400 5455600 8983600 4036400 11127000 10967000 7439100 5951400 2 2 2 2 2 2 2 2 2 2 2 1313600 2713900 53490 1873300 3896100 7223000 2688400 5513800 5836400 3827500 2974100 1223500 2529200 194930 2050400 3708700 6989900 2887600 5641800 5698200 3807600 2957600 1 1 1 1 1 1 1 1 1 1 1 1245600 2601000 37427 2117000 1843000 1857900 948810 5641700 5458200 3633600 3025400 1160100 2425200 146520 2190000 1747000 1993700 1148800 5485000 5269100 3631500 2993800 1 1 1 1 1 1 1 1 1 1 1 463840000 291910000 171930000 13628 1365 12579 71772;71773 86686;86687 86687 1832 2 MKLNISFPATGCQK Unmodified 1593.8007 0.80071861 1365 P62753 RPS6 40S ribosomal protein S6 yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 57.282 57.451 3 2.1041E-06 17436 20211116_3431_TMUAki_TMT10x_P_F4 112.72 87.005 5039800 10086000 20719 6755600 12210000 19277000 11448000 10535000 7265100 9306700 9168700 4692400 9399000 499290 7314300 11687000 18670000 11523000 11116000 7641600 9140000 8785800 2 2 1 2 2 2 2 2 2 2 2 5039800 10086000 20719 6755600 12210000 19277000 11448000 10535000 7265100 9306700 9168700 4692400 9399000 499290 7314300 11687000 18670000 11523000 11116000 7641600 9140000 8785800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 982310000 982310000 0 13629 1365 12579 71774;71775 86688;86689 86688 2 MKPILLQGHER Oxidation (M) 1336.7285 0.72853995 1623 Q13347 EIF3I Eukaryotic translation initiation factor 3 subunit I yes yes 0 0 1 1 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 32.188 32.215 4 0.00028489 8881 20211116_3439_TMUAki_TMT10x_S_F1 88.83 77.39 568760 969680 0 955390 911830 800310 664230 603870 649710 626240 840650 529520 904760 45938 973350 867690 820460 686250 624560 668380 610700 805030 3 3 0 3 3 3 3 3 3 3 3 219870 345990 0 338650 500580 473430 262790 232580 240570 224370 302280 204720 322820 22032 348020 473990 468570 278300 248380 247900 219470 289690 1 1 0 1 1 1 1 1 1 1 1 348890 623690 0 616740 411250 326890 401440 371290 409150 401880 538360 324810 581940 23906 625330 393700 351890 407950 376180 420480 391230 515340 2 2 0 2 2 2 2 2 2 2 2 55579000 29486000 26093000 13630 1623 12580 71776;71777;71778 86690;86691;86692 86691 2173 3 MKPILLQGHER Unmodified 1320.7336 0.73362533 1623 Q13347 EIF3I Eukaryotic translation initiation factor 3 subunit I yes yes 0 0 0 1 By MS/MS 2 0 1 1 35.593 35.692 4 0.0027797 8398 20211116_3440_TMUAki_TMT10x_S_F2 74.611 58.071 348490 563710 11096 571740 353810 281280 382950 405920 406800 328540 443510 324540 526030 36744 578360 340490 307270 387660 404110 414110 324060 426700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 348490 563710 11096 571740 353810 281280 382950 405920 406800 328540 443510 324540 526030 36744 578360 340490 307270 387660 404110 414110 324060 426700 2 2 1 2 2 2 2 2 2 2 2 9242200 0 9242200 13631 1623 12580 71779 86693;86694 86693 2 MKPLMGVIYVPLTDK Oxidation (M) 1719.9303 0.9303358 764 P22061;P22061-2 PCMT1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes no 0 0 1 1 By MS/MS By MS/MS 2.75 0.433 1 3 3 1 69.033 68.708 3 9.3634E-05 24623 20211116_3441_TMUAki_TMT10x_S_F3 88.507 75.527 14711000 24443000 110080 25664000 14858000 17354000 15956000 9795000 8477100 11260000 16185000 13698000 22813000 1324300 25971000 14280000 18022000 15896000 10384000 9224700 10937000 15374000 4 4 4 4 4 4 4 4 4 4 4 7501900 11694000 81874 12325000 7249400 10844000 8189300 5294200 4407500 5666200 7507400 6985600 10914000 694730 12507000 6979700 11013000 8140500 5673900 4759400 5518600 7146200 2 2 2 2 2 2 2 2 2 2 2 7209300 12750000 28207 13339000 7608200 6510200 7766800 4500900 4069600 5593900 8677500 6712700 11899000 629570 13464000 7300800 7008200 7755500 4710300 4465400 5418300 8228200 2 2 2 2 2 2 2 2 2 2 2 2340800000 1852600000 488190000 13632 764 12581 71780;71781;71782;71783 86695;86696;86697;86698 86697 880;881 4 MKPLVVFVLGGPGAGK Oxidation (M) 1584.9062 0.90616996 866 P30085;P30085-2 CMPK1 UMP-CMP kinase yes no 0 0 1 1 By MS/MS 6 0 1 1 67.678 67.611 3 0.00017347 21032 20211116_3445_TMUAki_TMT10x_S_F6 80.534 55.215 2970200 5889800 0 4771200 3903700 3549500 3476600 4660200 4716800 4446700 4117400 2764900 5491700 180720 4928200 3727200 3716300 3587200 4675800 4723000 4351700 3990500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2970200 5889800 0 4771200 3903700 3549500 3476600 4660200 4716800 4446700 4117400 2764900 5491700 180720 4928200 3727200 3716300 3587200 4675800 4723000 4351700 3990500 1 1 0 1 1 1 1 1 1 1 1 619430000 0 619430000 13633 866 12582 71784 86699 86699 1034 1 MKPVSDQEENELVILHLR Oxidation (M) 2165.1151 0.11505312 266 O60343;O60343-2;O60343-3 TBC1D4 TBC1 domain family member 4 yes no 0 0 1 1 By MS/MS 4 0 1 1 52.694 52.86 4 0.0037051 15567 20211116_3431_TMUAki_TMT10x_P_F4 59.585 48.315 2161700 3729400 45489 3684400 4357900 6570600 3329200 3608800 3394200 3146000 3359600 2013100 3479700 252370 3805000 4155400 6449100 3432700 3804800 3448900 3091600 3242000 1 1 1 1 1 1 1 1 1 1 1 2161700 3729400 45489 3684400 4357900 6570600 3329200 3608800 3394200 3146000 3359600 2013100 3479700 252370 3805000 4155400 6449100 3432700 3804800 3448900 3091600 3242000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 221780000 221780000 0 13634 266 12583 71785 86700 86700 214 1 MKQDAQVVLYR Unmodified 1349.7126 0.71255553 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 43.486 43.79 3 8.9885E-07 11129 20211116_3447_TMUAki_TMT10x_S_F8 131.69 99.437 25205000 39132000 244580 43495000 33312000 28238000 26178000 22922000 19702000 20511000 31004000 23470000 36531000 2386100 43835000 31774000 29589000 26726000 23502000 20727000 20131000 29559000 10 10 7 10 10 10 10 10 10 10 10 9000900 13578000 34170 14661000 16855000 16097000 10791000 8458300 7481600 7260100 10792000 8380700 12674000 858330 14901000 16009000 16139000 11160000 8949500 7873500 7140000 10308000 3 3 2 3 3 3 3 3 3 3 3 16204000 25554000 210410 28834000 16457000 12141000 15388000 14464000 12220000 13250000 20212000 15089000 23857000 1527800 28934000 15765000 13450000 15566000 14552000 12854000 12991000 19251000 7 7 5 7 7 7 7 7 7 7 7 859020000 575490000 283520000 13635 1433 12584 71786;71787;71788;71789 86701;86702;86703;86704;86705;86706;86707;86708;86709;86710 86710 10 MKQDAQVVLYR Oxidation (M) 1365.7075 0.70747015 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 1 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 35.991 36.48 3 0.018431 8667 20211116_3436_TMUAki_TMT10x_P_F8 58.781 46.205 612230 601860 0 653460 690270 609030 399020 295190 313280 272350 421410 569960 561790 40657 662330 653810 616130 417320 315290 326300 266940 403170 2 2 0 2 2 2 2 2 2 2 2 240820 324030 0 331920 557610 485870 277470 216720 241850 195690 283200 224200 302390 21807 340350 527450 479420 294990 233300 249070 191980 271910 1 1 0 1 1 1 1 1 1 1 1 371420 277830 0 321540 132660 123160 121550 78473 71430 76667 138210 345760 259400 18850 321970 126360 136700 122330 81987 77231 74951 131260 1 1 0 1 1 1 1 1 1 1 1 31490000 17307000 14184000 13636 1433 12584 71790;71791 86711;86712 86711 1940 2 MKVELCSFSGYK Oxidation (M) 1463.6789 0.67887214 1448 P83731 RPL24 60S ribosomal protein L24 yes yes 0 0 1 1 By MS/MS By MS/MS 4 3.29 2 1 2 2 3 49.877 49.797 3 0.0016298 13865 20211116_3428_TMUAki_TMT10x_P_F1 76.196 63.215 38318000 66318000 200290 69956000 60004000 68159000 39691000 73606000 69990000 55531000 60500000 35679000 61895000 3654700 71083000 57035000 69669000 42260000 74021000 69540000 54979000 58656000 7 7 5 7 7 7 7 7 7 7 7 16185000 28013000 133750 29855000 42703000 49772000 23669000 31714000 30713000 23798000 25449000 15071000 26146000 1837900 30625000 40475000 49070000 25222000 32919000 30750000 23568000 24712000 2 2 2 2 2 2 2 2 2 2 2 22132000 38305000 66540 40101000 17300000 18387000 16022000 41891000 39278000 31733000 35051000 20608000 35750000 1816800 40459000 16559000 20599000 17039000 41102000 38791000 31411000 33943000 5 5 3 5 5 5 5 5 5 5 5 4647000000 2871200000 1775800000 13637 1448 12585 71792;71793;71794;71795;71796 86713;86714;86715;86716;86717;86718;86719 86713 1953 7 MKVELCSFSGYK Unmodified 1447.684 0.68395752 1448 P83731 RPL24 60S ribosomal protein L24 yes yes 0 0 0 1 By MS/MS By MS/MS 3.57 2.87 2 2 1 2 3 4 57.362 57.168 3 5.4477E-12 17200 20211116_3440_TMUAki_TMT10x_S_F2 169.04 141.36 66303000 102010000 931270 122250000 101630000 100320000 76947000 42550000 30163000 45706000 67935000 61741000 95265000 6837000 122960000 96885000 102250000 77893000 46272000 34073000 44509000 64365000 5 5 4 5 5 5 5 5 5 5 5 53197000 80267000 835820 98031000 88879000 91839000 67326000 33618000 23269000 36843000 53526000 49538000 74964000 5666400 98660000 84729000 92633000 68055000 37216000 26673000 35850000 50698000 3 3 2 3 3 3 3 3 3 3 3 13105000 21746000 95450 24222000 12754000 8476600 9620600 8932000 6894500 8863500 14410000 12203000 20301000 1170600 24300000 12157000 9616800 9838000 9056400 7399900 8659300 13668000 2 2 2 2 2 2 2 2 2 2 2 5877400000 3887500000 1989900000 13638 1448 12585 71797;71798;71799;71800;71801;71802;71803 86720;86721;86722;86723;86724;86725;86726;86727 86725 8 MKYDESDNAFIR Oxidation (M) 1503.6664 0.6663932 225 O43615 TIMM44 Mitochondrial import inner membrane translocase subunit TIM44 yes yes 0 0 1 1 By MS/MS 4 0 2 2 39.122 39.173 3 0.042161 10047 20211116_3431_TMUAki_TMT10x_P_F4 47.242 34.475 983810 1492300 24021 1978300 3018400 2790100 1561700 1705700 2029300 1189200 1703200 916210 1394300 132450 1996000 2859100 2767900 1674800 1773500 2032400 1182700 1653100 1 1 1 1 1 1 1 1 1 1 1 983810 1492300 24021 1978300 3018400 2790100 1561700 1705700 2029300 1189200 1703200 916210 1394300 132450 1996000 2859100 2767900 1674800 1773500 2032400 1182700 1653100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 106840000 106840000 0 13639 225 12586 71804;71805 86728;86729 86728 177 2 MLAEDELR Oxidation (M) 991.46445 0.46444592 1301 P61204;P84077;P61204-2 ARF3;ARF1 ADP-ribosylation factor 3;ADP-ribosylation factor 1 yes no 0 0 1 0 By MS/MS 2 0 1 1 34.914 35.007 2 0.053532 8185 20211116_3440_TMUAki_TMT10x_S_F2 61.582 29.74 153210 249020 0 285300 133010 145930 184380 130260 161300 173520 207060 142650 232500 11815 286410 128790 156910 183620 134530 166730 167690 198330 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 153210 249020 0 285300 133010 145930 184380 130260 161300 173520 207060 142650 232500 11815 286410 128790 156910 183620 134530 166730 167690 198330 1 1 0 1 1 1 1 1 1 1 1 9557200 0 9557200 13640 1301 12588 71806 86730 86730 1755 1 MLAIYDGFDGFAK Oxidation (M) 1462.6803 0.68025235 1487 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 1 0 By MS/MS By MS/MS 6 0.775 3 4 3 5 5 75.544 75.557 2;3 8.621E-06 24340 20211116_3445_TMUAki_TMT10x_S_F6 110.84 83.74 30958000 54005000 383010 46583000 36352000 59339000 37941000 44436000 41960000 43186000 40980000 28826000 50365000 2829500 48237000 34908000 59329000 38526000 45895000 42477000 42229000 39562000 11 11 6 11 11 11 11 11 11 11 11 19595000 33355000 359760 29109000 21073000 45069000 24006000 28588000 26829000 28186000 26365000 18248000 31108000 1937500 30235000 20299000 44559000 24284000 29886000 27154000 27545000 25447000 7 7 5 7 7 7 7 7 7 7 7 11363000 20650000 23256 17474000 15279000 14269000 13935000 15848000 15132000 14999000 14615000 10579000 19257000 892010 18003000 14609000 14770000 14243000 16008000 15323000 14684000 14115000 4 4 1 4 4 4 4 4 4 4 4 3419700000 1568500000 1851200000 13641 1487 12589 71807;71808;71809;71810;71811;71812;71813;71814;71815;71816 86731;86732;86733;86734;86735;86736;86737;86738;86739;86740;86741;86742 86741 2019 12 MLAIYDGFDGFAK Unmodified 1446.6853 0.68533773 1487 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 By MS/MS 8 0 1 1 78.887 78.892 3 3.6565E-06 25944 20211116_3436_TMUAki_TMT10x_P_F8 100.55 85.58 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13642 1487 12589 71817 86743 86743 1 MLAPEGALNIHEK Oxidation (M) 1437.7286 0.72859953 1465 Q00169 PITPNA Phosphatidylinositol transfer protein alpha isoform yes yes 0 0 1 0 By MS/MS 5.5 0.5 1 1 2 43.502 43.636 3 0.0016412 10968 20211116_3444_TMUAki_TMT10x_S_F5 67.234 50.885 1611100 2652400 0 2647700 1487100 1567400 1321300 2185000 2413500 1858300 2337600 1500000 2475000 127380 2685300 1421500 1677300 1382700 2180600 2404800 1828400 2257400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1611100 2652400 0 2647700 1487100 1567400 1321300 2185000 2413500 1858300 2337600 1500000 2475000 127380 2685300 1421500 1677300 1382700 2180600 2404800 1828400 2257400 1 1 0 1 1 1 1 1 1 1 1 121670000 0 121670000 13643 1465 12590 71818;71819 86744;86745 86744 1967 2 MLATLEPEQR Oxidation (M) 1202.5965 0.59652272 1229 P54886;P54886-2 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes no 0 0 1 0 By MS/MS By MS/MS 2.86 0.639 2 4 1 4 3 39.019 38.943 2 0.0016448 12727 20211116_3441_TMUAki_TMT10x_S_F3 94.309 64.234 815280 1360400 2486.3 1636500 791490 726100 781320 1379600 1388600 989820 1354900 759120 1270400 69203 1636400 758780 810540 811860 1358000 1384900 982770 1308000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 815280 1360400 2486.3 1636500 791490 726100 781320 1379600 1388600 989820 1354900 759120 1270400 69203 1636400 758780 810540 811860 1358000 1384900 982770 1308000 3 3 1 3 3 3 3 3 3 3 3 70569000 28679000 41891000 13644 1229 12591 71820;71821;71822;71823;71824;71825;71826 86746;86747;86748;86749;86750 86749 1651 5 MLDAEDIVGTARPDEK Oxidation (M) 1774.8407 0.84072875 644 P12814;P12814-2;P12814-3;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 1 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 50.721 50.621 3 0.00029559 14639 20211116_3431_TMUAki_TMT10x_P_F4 71.697 55.012 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13645 644 12592 71827;71828 86751;86752 86751 687 2 MLDHEYTTK Oxidation (M) 1152.5121 0.51212439 624 P11387;Q969P6;Q969P6-2 TOP1;TOP1MT DNA topoisomerase 1;DNA topoisomerase I, mitochondrial yes no 0 0 1 0 By MS/MS 5 0 1 1 31.856 32.02 3 0.046571 6346 20211116_3444_TMUAki_TMT10x_S_F5 52.278 36.025 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13646 624 12593 71829 86753 86753 639 1 MLDMGFEPQIR 2 Oxidation (M) 1367.6214 0.62135726 710;104;2368 O00571;O00571-2;O15523;O15523-2;P17844;P17844-2;Q92841;Q92841-3;Q92841-1;Q92841-2 DDX3X;DDX3Y;DDX5;DDX17 ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 no no 0 0 2 0 By MS/MS By MS/MS 3.62 1 2 4 4 3 6 7 49.514 49.517 2;3 3.7634E-05 15751 20211116_3430_TMUAki_TMT10x_P_F3 100.69 89.324 20054000 34487000 161560 36781000 35513000 49134000 26224000 37658000 42838000 31778000 31610000 18672000 32189000 1943800 37545000 33823000 49034000 27600000 38691000 42455000 31278000 30841000 13 13 7 13 13 13 13 13 13 13 13 14027000 23680000 117670 25974000 30267000 43118000 20942000 26402000 30930000 22422000 22102000 13061000 22105000 1448900 26592000 28791000 42493000 22039000 27568000 30716000 22062000 21594000 8 8 3 8 8 8 8 8 8 8 8 6026500 10807000 43892 10807000 5246200 6015800 5282200 11256000 11908000 9356200 9508300 5611300 10084000 494890 10953000 5031600 6541800 5561200 11123000 11739000 9216100 9246600 5 5 4 5 5 5 5 5 5 5 5 5978300000 3588500000 2389800000 13647 104;710;2368 12594 71830;71831;71832;71833;71834;71835;71836;71837;71838;71839;71840;71841;71842 86754;86755;86756;86757;86758;86759;86760;86761;86762;86763;86764;86765;86766;86767 86758 83;84 14 MLDMGFEPQIR Oxidation (M) 1351.6264 0.62644264 710;104;2368 O00571;O00571-2;O15523;O15523-2;P17844;P17844-2;Q92841;Q92841-3;Q92841-1;Q92841-2 DDX3X;DDX3Y;DDX5;DDX17 ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 no no 0 0 1 0 By MS/MS By MS/MS 4.08 0.73 3 6 4 7 6 58.26 58.253 2;3 4.7866E-06 17417 20211116_3431_TMUAki_TMT10x_P_F4 122.44 101.61 63333000 104420000 798810 108420000 74001000 88188000 73565000 54515000 48895000 58280000 77621000 58975000 97448000 6095100 110020000 70990000 90331000 73880000 57239000 51841000 56765000 73989000 15 15 13 15 15 15 15 15 15 15 15 33673000 53553000 368220 56235000 44495000 61806000 45076000 28853000 25298000 30366000 40259000 31356000 49981000 3248700 57262000 42698000 61880000 45080000 31044000 27132000 29594000 38373000 8 8 7 8 8 8 8 8 8 8 8 29660000 50865000 430590 52187000 29506000 26381000 28489000 25662000 23597000 27915000 37362000 27619000 47467000 2846500 52760000 28292000 28451000 28800000 26195000 24709000 27170000 35616000 7 7 6 7 7 7 7 7 7 7 7 8984500000 5288200000 3696400000 13648 104;710;2368 12594 71843;71844;71845;71846;71847;71848;71849;71850;71851;71852;71853;71854;71855 86768;86769;86770;86771;86772;86773;86774;86775;86776;86777;86778;86779;86780;86781;86782 86770 83;84 15 MLDMGFEPQIR Unmodified 1335.6315 0.63152802 710;104;2368 O00571;O00571-2;O15523;O15523-2;P17844;P17844-2;Q92841;Q92841-3;Q92841-1;Q92841-2 DDX3X;DDX3Y;DDX5;DDX17 ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 no no 0 0 0 0 By MS/MS By MS/MS 5.25 0.968 2 3 2 1 3 5 68.284 68.321 2;3 1.1692E-15 21342 20211116_3445_TMUAki_TMT10x_S_F6 202.44 156.43 51842000 83639000 160100 82775000 53807000 58863000 64459000 33238000 27977000 32975000 57558000 48267000 78041000 3887800 84147000 51832000 60865000 63697000 35079000 31108000 32216000 54608000 8 8 2 8 8 8 8 8 8 8 8 33018000 51537000 160100 51688000 33492000 44091000 42585000 21879000 18266000 21477000 36956000 30741000 48090000 2563200 52606000 32330000 44886000 41967000 23354000 20310000 20992000 35071000 5 5 2 5 5 5 5 5 5 5 5 18824000 32102000 0 31087000 20315000 14772000 21874000 11359000 9710900 11498000 20602000 17525000 29951000 1324500 31542000 19501000 15978000 21730000 11725000 10798000 11224000 19537000 3 3 0 3 3 3 3 3 3 3 3 4974800000 2308600000 2666200000 13649 104;710;2368 12594 71856;71857;71858;71859;71860;71861;71862;71863 86783;86784;86785;86786;86787;86788;86789;86790;86791 86791 9 MLDQTLLDLNEM 2 Oxidation (M) 1466.6633 0.66328166 526 P06753-2;P06753-5;P06753-7 TPM3 Tropomyosin alpha-3 chain yes no 0 0 2 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 77.441 77.39 2 0.0034344 28192 20211116_3441_TMUAki_TMT10x_S_F3 64.191 45.411 25274000 45113000 652930 36856000 30238000 40143000 35091000 23059000 19586000 26006000 32354000 23538000 42065000 2744600 38231000 29154000 40309000 34860000 24396000 21057000 25278000 30816000 5 5 4 5 5 5 5 5 5 5 5 15773000 27509000 593530 22966000 15658000 28544000 21660000 14034000 11569000 16002000 19409000 14691000 25652000 1859300 23833000 15201000 28409000 21345000 15060000 12489000 15547000 18480000 3 3 3 3 3 3 3 3 3 3 3 9501000 17604000 59396 13890000 14580000 11599000 13430000 9025000 8017200 10004000 12945000 8846600 16413000 885390 14398000 13953000 11900000 13516000 9335200 8567900 9730500 12335000 2 2 1 2 2 2 2 2 2 2 2 3130000000 1920600000 1209400000 13650 526 12595 71864;71865;71866;71867 86792;86793;86794;86795;86796 86796 448;449 5 MLDQTLLDLNEM Oxidation (M) 1450.6684 0.66836704 526 P06753-2;P06753-5;P06753-7 TPM3 Tropomyosin alpha-3 chain yes no 0 0 1 0 By MS/MS By MS/MS 2.22 0.916 2 4 2 1 4 5 66.066 66.018 2 9.2791E-09 26329 20211116_3428_TMUAki_TMT10x_P_F1 152.28 128.85 25205000 42001000 260460 40153000 30409000 37692000 32850000 22294000 21666000 25940000 32261000 23470000 39184000 2320300 41056000 29229000 38204000 32847000 23553000 22907000 25184000 30793000 11 11 8 11 11 11 11 11 11 11 11 10488000 16866000 108200 16629000 10249000 19609000 12956000 8975700 8784700 11105000 13285000 9765900 15737000 895100 17026000 9897600 19554000 12871000 9726200 9279100 10758000 12676000 4 4 2 4 4 4 4 4 4 4 4 14717000 25135000 152270 23523000 20160000 18083000 19894000 13319000 12881000 14835000 18976000 13704000 23447000 1425200 24030000 19332000 18650000 19976000 13827000 13628000 14426000 18117000 7 7 6 7 7 7 7 7 7 7 7 7453700000 3147800000 4305900000 13651 526 12595 71868;71869;71870;71871;71872;71873;71874;71875;71876 86797;86798;86799;86800;86801;86802;86803;86804;86805 86797 448;449 9 MLDQTLLDLNEM Unmodified 1434.6735 0.67345241 526 P06753-2;P06753-5;P06753-7 TPM3 Tropomyosin alpha-3 chain yes no 0 0 0 0 By MS/MS By MS/MS 2.7 1.27 2 3 2 2 1 4 6 75.358 75.342 2 3.5362E-06 27113 20211116_3428_TMUAki_TMT10x_P_F1 118.18 106.13 20629000 32906000 135440 37347000 23808000 19996000 24777000 12875000 10367000 12810000 23187000 19207000 30721000 1456600 37527000 22845000 21281000 24636000 13448000 11632000 12514000 21970000 11 11 6 11 11 11 11 11 11 11 11 9748700 14339000 45185 15631000 9226000 10772000 10396000 5080100 4352600 5165900 10228000 9076300 13385000 713540 15782000 8870100 11145000 10297000 5454900 4900900 5041800 9684500 4 4 2 4 4 4 4 4 4 4 4 10880000 18567000 90251 21716000 14582000 9224800 14381000 7794900 6014000 7644200 12959000 10130000 17336000 743100 21745000 13975000 10136000 14339000 7992900 6730800 7471900 12286000 7 7 4 7 7 7 7 7 7 7 7 3831800000 1829700000 2002100000 13652 526 12595 71877;71878;71879;71880;71881;71882;71883;71884;71885;71886 86806;86807;86808;86809;86810;86811;86812;86813;86814;86815;86816 86806 11 MLEDRDLFVMR 2 Oxidation (M) 1455.685 0.68502015 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 2 1 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 43.66 43.569 3 0.051374 14472 20211116_3441_TMUAki_TMT10x_S_F3 51.359 36.387 2127800 3338300 7576.6 4041600 2585100 2774500 2133900 3966900 4059600 3121300 3466600 1981200 3117600 181960 4054500 2467300 2931400 2247700 3947800 4024600 3083300 3362500 3 3 2 3 3 3 3 3 3 3 3 435630 747840 3634.5 709080 927190 1227400 619010 770020 852870 648160 764400 405640 697670 46388 733870 881510 1208200 651240 802340 854270 638040 740130 1 1 1 1 1 1 1 1 1 1 1 1692200 2590500 3942.1 3332500 1657900 1547000 1514900 3196900 3206700 2473200 2702200 1575500 2419900 135570 3320600 1585800 1723200 1596400 3145400 3170300 2445300 2622300 2 2 1 2 2 2 2 2 2 2 2 629000000 309220000 319790000 13653 1684 12596 71887;71888;71889;71890 86817;86818 86818 2254;2255 2 MLEDRDLFVMR Oxidation (M) 1439.6901 0.69010553 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 1 1 By MS/MS 4 0 2 2 51.03 51.195 3 0.026601 14899 20211116_3431_TMUAki_TMT10x_P_F4 59.57 40.79 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13654 1684 12596 71891;71892 86819;86820 86820 2254;2255 2 MLEMGITGPEGHVLSRPEELEAEAVFR 2 Oxidation (M) 3028.4634 0.46340664 1692 Q14195-2;Q14195 DPYSL3 Dihydropyrimidinase-related protein 3 yes no 0 0 2 1 By MS/MS 1 0 1 1 61.54 61.54 4 4.6526E-18 18777 20211116_3428_TMUAki_TMT10x_P_F1 133.95 121.63 4787900 8347600 27591 7604300 5207900 10796000 5651000 6368400 5690900 5621900 6094400 4457300 7786400 310170 7857900 4998700 10702000 5710200 6676100 5802100 5521400 5866600 2 2 1 2 2 2 2 2 2 2 2 4787900 8347600 27591 7604300 5207900 10796000 5651000 6368400 5690900 5621900 6094400 4457300 7786400 310170 7857900 4998700 10702000 5710200 6676100 5802100 5521400 5866600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 748180000 748180000 0 13655 1692 12597 71893 86821;86822 86821 2269;2270 2 MLFCSCQDQACAER Oxidation (M) 1790.6844 0.68444458 89 O00451;O00451-3;O00451-2 GFRA2 GDNF family receptor alpha-2 yes no 0 0 1 0 By MS/MS By MS/MS 3.6 0.49 2 3 3 2 38.941 39.051 2;3 1.9616E-18 10478 20211116_3442_TMUAki_TMT10x_S_F4 163.83 149.15 1826700 2886900 13147 3413300 4196200 3947100 2353700 2299800 2330800 2067900 2395300 1700900 2695700 191320 3452900 3977600 3951100 2483100 2414400 2374500 2029100 2308700 5 5 3 5 5 5 5 5 5 5 5 1539900 2372600 13147 2799300 3934700 3741400 2133000 1972600 1957000 1786800 1958200 1433900 2215500 173460 2839700 3728300 3713700 2252400 2089300 1998600 1752700 1889000 3 3 3 3 3 3 3 3 3 3 3 286790 514260 0 613980 261430 205690 220680 327190 373840 281090 437140 266990 480230 17860 613210 249290 237460 230710 325150 375860 276420 419730 2 2 0 2 2 2 2 2 2 2 2 266670000 171610000 95061000 13656 89 12598 71894;71895;71896;71897;71898 86823;86824;86825;86826;86827;86828 86828 71 6 MLFKDDYPSSPPK Oxidation (M) 1539.7279 0.72793082 1408 P63279 UBE2I SUMO-conjugating enzyme UBC9 yes yes 0 0 1 1 By MS/MS By MS/MS 6.8 0.748 4 4 2 6 4 47.913 48.245 3;4 0.00036756 13062 20211116_3445_TMUAki_TMT10x_S_F6 81.904 65.024 33941000 56504000 130790 67714000 63267000 70719000 39475000 76627000 87296000 60200000 61237000 31603000 52766000 3229200 68332000 60065000 71991000 42766000 77119000 85791000 59471000 59880000 11 11 7 11 11 11 11 11 11 11 11 16923000 27220000 74285 32844000 51005000 57950000 29479000 36631000 41633000 29294000 30107000 15758000 25420000 1941000 33484000 48369000 57008000 31404000 38100000 41414000 28912000 29400000 5 5 4 5 5 5 5 5 5 5 5 17018000 29284000 56508 34870000 12261000 12768000 9996100 39996000 45663000 30906000 31129000 15845000 27346000 1288200 34848000 11696000 14983000 11362000 39019000 44378000 30559000 30479000 6 6 3 6 6 6 6 6 6 6 6 8869000000 5176600000 3692400000 13657 1408 12599 71899;71900;71901;71902;71903;71904;71905;71906;71907;71908 86829;86830;86831;86832;86833;86834;86835;86836;86837;86838;86839;86840;86841 86838 1891 13 MLFKDDYPSSPPK Unmodified 1523.733 0.7330162 1408 P63279 UBE2I SUMO-conjugating enzyme UBC9 yes yes 0 0 0 1 By MS/MS By MS/MS 7.6 0.49 2 3 3 2 53.692 53.964 3;4 1.2852E-11 15718 20211116_3436_TMUAki_TMT10x_P_F8 146.96 124.76 54263000 87842000 573420 106960000 86717000 84937000 61296000 48849000 43507000 48893000 68498000 50528000 82037000 5409100 107440000 82539000 87075000 62954000 51489000 45926000 47750000 65304000 9 9 7 9 9 9 9 9 9 9 9 30623000 47786000 191340 58382000 70097000 69894000 47297000 28238000 24704000 27653000 38362000 28514000 44629000 3191400 58983000 66646000 69557000 48468000 30795000 26605000 27031000 36584000 7 7 5 7 7 7 7 7 7 7 7 23640000 40056000 382090 48578000 16620000 15042000 13999000 20611000 18803000 21240000 30135000 22014000 37408000 2217700 48455000 15893000 17518000 14485000 20694000 19321000 20718000 28720000 2 2 2 2 2 2 2 2 2 2 2 4165400000 2213100000 1952300000 13658 1408 12599 71909;71910;71911;71912;71913 86842;86843;86844;86845;86846;86847;86848;86849;86850 86845 9 MLGAPDESSVR Acetyl (Protein N-term);Oxidation (M) 1218.5551 0.55505184 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4;Q7Z4S6-6 KIF21A Kinesin-like protein KIF21A yes no 1 0 1 0 By matching By MS/MS 1 0 2 1 1 38.311 38.268 2 0.00013183 11263 20211116_3439_TMUAki_TMT10x_S_F1 74.424 65.21 388140 639650 9838.4 779870 373550 365000 392820 554260 609710 500380 627550 361470 597390 41144 779490 359260 401680 404160 552370 611420 490920 604820 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 388140 639650 9838.4 779870 373550 365000 392820 554260 609710 500380 627550 361470 597390 41144 779490 359260 401680 404160 552370 611420 490920 604820 1 1 1 1 1 1 1 1 1 1 1 42400000 20989000 21411000 13659 2082 12600 71914;71915 86851 86851 2586 1 MLGPEGGEGFVVK Acetyl (Protein N-term);Oxidation (M) 1376.6646 0.66460229 1181 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 1 0 1 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 67.187 66.99 2 6.6535E-13 22493 20211116_3429_TMUAki_TMT10x_P_F2 145.89 119.29 49903000 82651000 403590 79660000 56277000 77116000 56833000 61221000 61513000 59584000 67192000 46466000 77111000 4358200 81440000 53983000 78360000 57764000 62999000 62575000 58261000 64642000 12 12 5 12 12 12 12 12 12 12 12 25228000 38409000 195160 37324000 28959000 51108000 31006000 29371000 28946000 27238000 32320000 23490000 35835000 2182000 38359000 27822000 50727000 31280000 30895000 29658000 26689000 31073000 6 6 2 6 6 6 6 6 6 6 6 24675000 44242000 208430 42336000 27317000 26008000 25827000 31850000 32566000 32347000 34873000 22976000 41275000 2176200 43080000 26162000 27634000 26484000 32103000 32917000 31571000 33569000 6 6 3 6 6 6 6 6 6 6 6 10583000000 5522900000 5060000000 13660 1181 12601 71916;71917;71918;71919;71920;71921;71922;71923 86852;86853;86854;86855;86856;86857;86858;86859;86860;86861;86862;86863 86854 1591 12 MLGSGFKAER Acetyl (Protein N-term);Oxidation (M) 1152.5597 0.55974328 1213 P53990;P53990-2;P53990-4;P53990-3 IST1 IST1 homolog yes no 1 0 1 1 By MS/MS 4 0 1 1 37.826 37.983 2 0.022046 9992 20211116_3442_TMUAki_TMT10x_S_F4 61.691 13.732 186130 323150 904.35 383940 203060 160800 196030 223290 259290 198420 291260 173310 301760 16511 384050 194590 178980 201160 223130 262150 194810 279970 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 186130 323150 904.35 383940 203060 160800 196030 223290 259290 198420 291260 173310 301760 16511 384050 194590 178980 201160 223130 262150 194810 279970 1 1 1 1 1 1 1 1 1 1 1 14711000 0 14711000 13661 1213 12602 71924 86864 86864 1625 1 MLGTEGGEGFVVK Acetyl (Protein N-term);Oxidation (M) 1380.6595 0.65951691 894 P31943 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes yes 1 0 1 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 64.993 64.794 2 2.6137E-19 23095 20211116_3441_TMUAki_TMT10x_S_F3 137.98 116.68 47796000 79382000 584350 71718000 58855000 77649000 59082000 63970000 58285000 58815000 63085000 44506000 74043000 3922500 73794000 56469000 78430000 59893000 65577000 59500000 57654000 60707000 10 10 6 10 10 10 10 10 10 10 10 26441000 40736000 42508 39353000 32341000 55725000 36265000 35438000 31752000 31949000 34258000 24619000 38006000 1600600 40489000 31107000 55303000 36440000 36950000 32589000 31346000 32970000 5 5 2 5 5 5 5 5 5 5 5 21355000 38646000 541840 32364000 26514000 21924000 22817000 28533000 26532000 26866000 28827000 19888000 36037000 2322000 33305000 25361000 23127000 23453000 28627000 26911000 26308000 27737000 5 5 4 5 5 5 5 5 5 5 5 10158000000 5334100000 4824300000 13662 894 12603 71925;71926;71927;71928;71929;71930;71931;71932 86865;86866;86867;86868;86869;86870;86871;86872;86873;86874 86873 1092 10 MLGTEGGEGFVVK Acetyl (Protein N-term) 1364.6646 0.66460229 894 P31943 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes yes 1 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 76.862 76.767 2 1.985E-09 26402 20211116_3429_TMUAki_TMT10x_P_F2 98.943 80.328 29238000 45069000 0 46586000 31349000 38736000 33943000 24367000 20532000 24696000 33920000 27220000 42060000 2041100 47301000 30097000 39623000 33879000 25510000 21949000 24106000 32307000 5 5 0 5 5 5 5 5 5 5 5 18446000 27604000 0 27273000 17316000 28769000 21343000 16184000 13582000 15831000 20926000 17172000 25756000 1147800 27869000 16681000 28933000 21198000 17079000 14417000 15476000 19960000 3 3 0 3 3 3 3 3 3 3 3 10792000 17465000 0 19313000 14033000 9967600 12601000 8183400 6950100 8864500 12994000 10048000 16304000 893310 19432000 13417000 10691000 12682000 8430800 7532300 8629500 12348000 2 2 0 2 2 2 2 2 2 2 2 2777100000 1419700000 1357400000 13663 894 12603 71933;71934;71935;71936;71937;71938 86875;86876;86877;86878;86879;86880;86881 86876 7 MLGTGPAAATTAATTSSNVSVLQQFASGLK Acetyl (Protein N-term) 2921.4804 0.48043692 1012 P42345 MTOR Serine/threonine-protein kinase mTOR yes yes 1 0 0 0 By MS/MS By MS/MS 2.4 0.49 3 2 3 2 82.029 82.006 3 5.471E-27 29048 20211116_3430_TMUAki_TMT10x_P_F3 97.441 89.637 1516800 2401700 0 2471000 1506100 1427100 1616200 691800 687960 871430 1458200 1412200 2241300 119560 2500300 1446500 1501700 1604800 745860 767830 843680 1382800 2 2 0 2 2 2 2 2 2 2 2 772470 1168800 0 1180100 717390 932770 897090 421040 404170 524290 824470 719220 1090700 61044 1199400 692240 954000 885300 457000 447660 507800 782320 1 1 0 1 1 1 1 1 1 1 1 744290 1232800 0 1290900 788710 494280 719060 270760 283790 347130 633700 692980 1150600 58518 1300900 754260 547650 719550 288850 320170 335880 600470 1 1 0 1 1 1 1 1 1 1 1 568860000 251390000 317470000 13664 1012 12604 71939;71940;71941;71942;71943 86882;86883;86884 86883 3 MLIYDPAKR Unmodified 1105.5954 0.59540051 517 P06493;P06493-2 CDK1 Cyclin-dependent kinase 1 yes no 0 0 0 1 By matching By MS/MS 1.33 0.471 2 1 1 2 47.622 47.515 3 0.0067565 15103 20211116_3439_TMUAki_TMT10x_S_F1 66.621 35.25 2604300 4296900 24400 4415600 2726400 2216300 2304200 3227200 3083600 2861900 3663700 2425100 4009900 240370 4463400 2605100 2416200 2383500 3219300 3123500 2810100 3516300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2604300 4296900 24400 4415600 2726400 2216300 2304200 3227200 3083600 2861900 3663700 2425100 4009900 240370 4463400 2605100 2416200 2383500 3219300 3123500 2810100 3516300 2 2 2 2 2 2 2 2 2 2 2 342730000 175870000 166860000 13665 517 12605 71944;71945;71946 86885;86886 86885 2 MLIYDPAKR Oxidation (M) 1121.5903 0.59031513 517 P06493;P06493-2 CDK1 Cyclin-dependent kinase 1 yes no 0 0 1 1 By MS/MS By MS/MS 8 0 2 1 1 39.75 39.985 3 0.004328 9406 20211116_3447_TMUAki_TMT10x_S_F8 67.414 42.028 3450600 5521800 2387.9 6227500 6427100 5584500 3917300 5369600 5469900 4605800 5379200 3212500 5155000 291910 6293600 6097100 5724000 4152800 5447500 5493500 4529700 5192000 3 3 1 3 3 3 3 3 3 3 3 1463000 2203000 0 2698600 4307300 3522500 2005000 1984900 1835700 1691300 2001600 1362000 2057500 137580 2730300 4070600 3503100 2148900 2086900 1880800 1663900 1925700 1 1 0 1 1 1 1 1 1 1 1 1987600 3318700 2387.9 3528900 2119700 2062100 1912300 3384700 3634200 2914500 3377700 1850500 3097500 154330 3563300 2026500 2220900 2003900 3360500 3612800 2865800 3266300 2 2 1 2 2 2 2 2 2 2 2 256500000 164530000 91974000 13666 517 12605 71947;71948 86887;86888 86887 418 2 MLKPAFIFDGR Oxidation (M) 1309.6853 0.68527815 283 O60701;O60701-3;O60701-2 UGDH UDP-glucose 6-dehydrogenase yes no 0 0 1 1 By MS/MS 2 0 1 1 56.967 56.717 3 0.10089 18328 20211116_3429_TMUAki_TMT10x_P_F2 41.317 23.453 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13667 283 12606 71949 86889 86889 221 1 MLKPAFIFDGRR Oxidation (M) 1465.7864 0.78638918 283 O60701;O60701-3;O60701-2 UGDH UDP-glucose 6-dehydrogenase yes no 0 0 1 2 By MS/MS 5 0 1 1 47.138 47.302 4 0.00086346 12440 20211116_3444_TMUAki_TMT10x_S_F5 79.152 63.262 984650 1636500 0 1660900 1113200 922340 757610 2979600 2452900 1888500 1846300 916740 1527100 74473 1681600 1057900 1031400 839550 2892900 2399700 1889300 1799900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 984650 1636500 0 1660900 1113200 922340 757610 2979600 2452900 1888500 1846300 916740 1527100 74473 1681600 1057900 1031400 839550 2892900 2399700 1889300 1799900 1 1 0 1 1 1 1 1 1 1 1 244290000 0 244290000 13668 283 12607 71950 86890 86890 221 1 MLKPQPLQQPSQPQQPPPTQQAVAR Acetyl (Protein N-term);Oxidation (M) 2850.481 0.48104604 2315 Q8WWM7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7-3;Q8WWM7-7 ATXN2L Ataxin-2-like protein yes no 1 0 1 1 By MS/MS By MS/MS 8 0 4 2 2 46.543 46.564 3;4 2.9087E-23 12215 20211116_3447_TMUAki_TMT10x_S_F8 114.63 107.11 2363400 4642400 24388 4175000 3090500 3903400 2548000 6125800 5554800 4154100 4183500 2200600 4330100 215360 4288100 2950200 4043300 2706000 6057100 5470800 4138300 4078100 8 8 5 8 8 8 8 8 8 8 8 640170 1189000 4064.7 1150500 1441500 2180200 1076600 1742600 1580700 1125900 1105500 596040 1109300 62408 1191900 1372900 2147700 1126700 1775400 1569200 1125100 1081200 3 3 2 3 3 3 3 3 3 3 3 1723200 3453400 20324 3024400 1649000 1723300 1471400 4383200 3974000 3028100 3078000 1604600 3220800 152950 3096200 1577400 1895600 1579200 4281700 3901600 3013200 2996900 5 5 3 5 5 5 5 5 5 5 5 1275500000 775070000 500420000 13669 2315 12608 71951;71952;71953;71954 86891;86892;86893;86894;86895;86896;86897;86898 86897 2668 8 MLLCEAVAAVMAK Unmodified 1405.7131 0.71314916 1218 P54136;P54136-2 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS 3 0.816 1 1 1 3 80.944 80.918 2;3 9.0931E-06 27477 20211116_3442_TMUAki_TMT10x_S_F4 101.38 75.442 1972700 3169600 26819 2844000 2311800 1766100 2324500 1406900 1129300 1409600 2090200 1836900 2956400 193290 2908200 2218600 1857600 2320200 1448700 1235300 1376600 1986600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1972700 3169600 26819 2844000 2311800 1766100 2324500 1406900 1129300 1409600 2090200 1836900 2956400 193290 2908200 2218600 1857600 2320200 1448700 1235300 1376600 1986600 1 1 1 1 1 1 1 1 1 1 1 359210000 0 359210000 13670 1218 12609 71955;71956;71957 86899;86900 86900 2 MLLDPMGGIVMTNDGNAILR 2 Oxidation (M) 2162.0534 0.053380839 1094 P49368 CCT3 T-complex protein 1 subunit gamma yes yes 0 0 2 0 By MS/MS By MS/MS 6.3 0.64 1 5 4 6 4 73.904 73.958 3 6.1772E-07 22859 20211116_3445_TMUAki_TMT10x_S_F6 94.856 78.718 30241000 51458000 438990 45114000 37342000 52475000 38312000 38221000 35276000 38311000 40348000 28160000 47992000 2940600 46582000 35852000 52684000 38717000 39583000 36200000 37412000 38765000 13 13 10 13 13 13 13 13 13 13 13 15869000 26223000 253040 23001000 16022000 34139000 19486000 20685000 18943000 20792000 20619000 14777000 24457000 1521200 23859000 15463000 33789000 19568000 21713000 19355000 20303000 19838000 7 7 5 7 7 7 7 7 7 7 7 14372000 25235000 185950 22113000 21320000 18337000 18826000 17536000 16332000 17518000 19729000 13383000 23535000 1419400 22723000 20389000 18895000 19149000 17870000 16845000 17110000 18927000 6 6 5 6 6 6 6 6 6 6 6 6114100000 3375600000 2738500000 13671 1094 12610 71958;71959;71960;71961;71962;71963;71964;71965;71966;71967 86901;86902;86903;86904;86905;86906;86907;86908;86909;86910;86911;86912;86913 86910 1446;1447;1448 13 MLLDPMGGIVMTNDGNAILR Oxidation (M) 2146.0585 0.058466216 1094 P49368 CCT3 T-complex protein 1 subunit gamma yes yes 0 0 1 0 By MS/MS By MS/MS 7.4 0.49 3 2 1 4 78.133 78.144 3 4.8327E-05 25331 20211116_3447_TMUAki_TMT10x_S_F8 74.618 65.761 7141200 10373000 0 9852100 7653800 10544000 7725100 7357600 6434900 6607500 8528500 6648200 9677300 473160 10098000 7332400 10627000 7792200 7619000 6677100 6484100 8162300 2 2 0 2 2 2 2 2 2 2 2 5002100 7029000 0 6773200 4981500 8403200 5158400 5289100 4544400 4892800 6107500 4656700 6557900 323390 6952200 4775100 8390100 5204100 5522900 4705500 4794900 5843300 1 1 0 1 1 1 1 1 1 1 1 2139100 3344100 0 3078900 2672200 2140500 2566700 2068500 1890400 1714700 2421000 1991500 3119400 149770 3145600 2557300 2236900 2588100 2096200 1971600 1689200 2319000 1 1 0 1 1 1 1 1 1 1 1 2939400000 742930000 2196500000 13672 1094 12610 71968;71969;71970;71971;71972 86914;86915;86916 86916 1446;1447;1448 3 MLLDPMGGIVMTNDGNAILR Unmodified 2130.0636 0.063551594 1094 P49368 CCT3 T-complex protein 1 subunit gamma yes yes 0 0 0 0 By MS/MS By MS/MS 7.6 0.49 2 3 2 3 79.84 79.85 2;3 3.1617E-51 25718 20211116_3447_TMUAki_TMT10x_S_F8 222.51 205.83 12930000 20132000 88577 20985000 12746000 16332000 14757000 6875400 7353600 8752200 14015000 12040000 18788000 832980 21278000 12277000 16712000 14634000 7523900 8041300 8470600 13313000 5 5 3 5 5 5 5 5 5 5 5 8964400 13944000 79299 13894000 7950800 13724000 9751400 5600000 6215500 7235500 10034000 8347300 13011000 495390 14175000 7673700 13809000 9687600 6152600 6613400 6999200 9561200 3 3 2 3 3 3 3 3 3 3 3 3965600 6188000 9278 7091400 4795100 2608000 5005300 1275500 1138100 1516700 3980800 3692400 5777400 337590 7103500 4602800 2903400 4946300 1371300 1427900 1471300 3752100 2 2 1 2 2 2 2 2 2 2 2 4464600000 1572900000 2891700000 13673 1094 12610 71973;71974;71975;71976;71977 86917;86918;86919;86920;86921 86920 5 MLLFVEQVASK Acetyl (Protein N-term) 1305.7003 0.70025951 2043 Q71RC2;Q71RC2-5;Q71RC2-6;Q71RC2-4;Q71RC2-7 LARP4 La-related protein 4 yes no 1 0 0 0 By MS/MS 6.5 0.5 1 1 2 85.087 85.108 2 0.0013295 30344 20211116_3446_TMUAki_TMT10x_S_F7 40.496 17.756 290870 500500 0 446160 335370 331750 378450 342040 354830 332170 394210 270780 466820 19234 457290 322300 345260 380900 346950 363410 324820 379060 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 290870 500500 0 446160 335370 331750 378450 342040 354830 332170 394210 270780 466820 19234 457290 322300 345260 380900 346950 363410 324820 379060 1 1 0 1 1 1 1 1 1 1 1 10757000 0 10757000 13674 2043 12611 71978;71979 86922 86922 1 MLLNDFLNDQNRDK Unmodified 1734.8359 0.83591814 1483 Q01581 HMGCS1 Hydroxymethylglutaryl-CoA synthase, cytoplasmic yes yes 0 0 0 1 By MS/MS 6 0 1 1 65.76 65.705 3 1.2544E-09 20291 20211116_3445_TMUAki_TMT10x_S_F6 111.81 71.219 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13675 1483 12612 71980 86923 86923 1 MLLPNILLTGTPGVGK Unmodified 1622.9429 0.9429494 3280 Q9Y3D8 AK6 Adenylate kinase isoenzyme 6 yes yes 0 0 0 0 By matching By MS/MS 6 0 2 1 1 79.797 79.785 3 0.00043188 26027 20211116_3445_TMUAki_TMT10x_S_F6 70.529 57.392 4091400 6478300 0 6397900 5131800 3784300 5673000 2283600 2111100 2968300 4518500 3808800 6044700 259460 6493500 4928100 3982700 5615800 2418000 2389000 2870800 4284300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4091400 6478300 0 6397900 5131800 3784300 5673000 2283600 2111100 2968300 4518500 3808800 6044700 259460 6493500 4928100 3982700 5615800 2418000 2389000 2870800 4284300 1 1 0 1 1 1 1 1 1 1 1 1426500000 806490000 620040000 13676 3280 12613 71981;71982 86924 86924 1 MLLQSSEGR Oxidation (M) 1035.5019 0.50189405 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 1 0 By matching By MS/MS 4.5 0.5 1 1 1 1 32.793 32.888 2 0.016118 6692 20211116_3444_TMUAki_TMT10x_S_F5 68.016 42.189 85789 174920 2490.6 172040 108650 60107 98312 77325 70458 92660 136420 79897 163210 9753.9 174040 104070 68525 99400 78209 75238 89864 129560 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 85789 174920 2490.6 172040 108650 60107 98312 77325 70458 92660 136420 79897 163210 9753.9 174040 104070 68525 99400 78209 75238 89864 129560 1 1 1 1 1 1 1 1 1 1 1 32079000 27348000 4731700 13677 352 12614 71983;71984 86925 86925 266 1 MLLQSSEGR Unmodified 1019.507 0.50697943 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 By MS/MS 6 0 1 1 37.636 37.799 2 0.0028526 8939 20211116_3445_TMUAki_TMT10x_S_F6 80.455 56.482 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13678 352 12614 71985 86926 86926 1 MLLSPGGVSQPLTASLAR Oxidation (M) 1812.9768 0.97676872 2012 Q6PK04 CCDC137 Coiled-coil domain-containing protein 137 yes yes 0 0 1 0 By MS/MS 2 0 1 1 63.852 63.554 3 0.0025871 21138 20211116_3429_TMUAki_TMT10x_P_F2 62.589 39.711 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13679 2012 12615 71986 86927 86927 2551 1 MLLYTEVTR Oxidation (M) 1140.5849 0.5848954 1133;884 P50395;P31150 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha no no 0 0 1 0 By MS/MS By MS/MS 5.88 1.36 2 1 2 2 1 5 3 47.237 47.563 2 4.6793E-05 13617 20211116_3433_TMUAki_TMT10x_P_F5 110.38 63.95 31395000 55156000 168710 62064000 67470000 82806000 42593000 67191000 60632000 50091000 50324000 29232000 51492000 3108500 63138000 64068000 82727000 45063000 68592000 60528000 49626000 48865000 9 9 5 9 9 9 9 9 9 9 9 24526000 42576000 123390 48215000 61008000 76299000 37110000 51109000 46812000 38265000 38001000 22837000 39749000 2561400 49209000 57898000 75430000 39192000 52851000 46886000 37900000 36931000 7 7 4 7 7 7 7 7 7 7 7 6869000 12580000 45315 13849000 6461800 6507200 5482500 16083000 13821000 11826000 12323000 6395500 11743000 547160 13929000 6170200 7297200 5870500 15741000 13642000 11725000 11934000 2 2 1 2 2 2 2 2 2 2 2 4502900000 2690500000 1812300000 13680 1133;884 12616 71987;71988;71989;71990;71991;71992;71993;71994 86928;86929;86930;86931;86932;86933;86934;86935;86936;86937;86938;86939;86940 86929 1065 13 MLLYTEVTR Unmodified 1124.59 0.58998078 1133;884 P50395;P31150 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha no no 0 0 0 0 By MS/MS By MS/MS 7.5 0.764 2 2 8 3 9 69.355 69.478 2 6.0761E-06 16744 20211116_3447_TMUAki_TMT10x_S_F8 160.88 117.76 112090000 176810000 1938200 214740000 132080000 162600000 117990000 143510000 123400000 129790000 149080000 104370000 165130000 10499000 215610000 126350000 168430000 120590000 146470000 126210000 127330000 143020000 13 13 9 13 13 13 13 13 13 13 13 52371000 82856000 1724400 105490000 77387000 109120000 64097000 67068000 57356000 61286000 66702000 48770000 77398000 5734300 106070000 73936000 109990000 65503000 70139000 58977000 60094000 64056000 3 3 2 3 3 3 3 3 3 3 3 59718000 93955000 213810 109250000 54691000 53479000 53896000 76444000 66041000 68505000 82381000 55603000 87728000 4764500 109540000 52412000 58438000 55087000 76327000 67234000 67233000 78964000 10 10 7 10 10 10 10 10 10 10 10 8335000000 4910200000 3424800000 13681 1133;884 12616 71995;71996;71997;71998;71999;72000;72001;72002;72003;72004;72005;72006 86941;86942;86943;86944;86945;86946;86947;86948;86949;86950;86951;86952;86953;86954;86955;86956 86947 16 MLMRIHEINLLK Unmodified 1509.8524 0.85236025 3367 yes yes 0 0 0 1 By MS/MS 6 0 1 1 51.522 51.654 3 0.04405 14471 20211116_3445_TMUAki_TMT10x_S_F6 35.645 0 + 4541600 7581700 70867 8410200 3853800 4261600 4215100 4224600 5871400 5448500 6174200 4229200 7077600 432940 8459200 3708600 4596500 4308000 4333800 5911400 5270800 5946700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4541600 7581700 70867 8410200 3853800 4261600 4215100 4224600 5871400 5448500 6174200 4229200 7077600 432940 8459200 3708600 4596500 4308000 4333800 5911400 5270800 5946700 1 1 1 1 1 1 1 1 1 1 1 451510000 0 451510000 13682 3367 12617 72007 86957 86957 1 MLNFNVPHIK Oxidation (M) 1227.6434 0.64341333 2309 Q8WVM8 SCFD1 Sec1 family domain-containing protein 1 yes yes 0 0 1 0 By MS/MS 2 0 1 1 54.045 53.85 3 0.077213 15881 20211116_3440_TMUAki_TMT10x_S_F2 42.718 18.336 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13683 2309 12618 72008 86958 86958 2667 1 MLNHVLNICEK Unmodified 1369.6846 0.68462622 2762 Q9GZZ1 NAA50 N-alpha-acetyltransferase 50 yes yes 0 0 0 0 By MS/MS 8 0 1 1 52.87 52.971 3 0.00088009 15330 20211116_3436_TMUAki_TMT10x_P_F8 78.653 59.555 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13684 2762 12619 72009 86959 86959 1 MLPDKDCR Oxidation (M) 1049.4634 0.46340006 787 P23528 CFL1 Cofilin-1 yes yes 0 0 1 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 30.837 30.866 3 0.017967 6760 20211116_3431_TMUAki_TMT10x_P_F4 62.969 31.017 1166600 2232000 7161.5 1313500 2394400 3573000 2211600 1856600 1866200 1780200 2080100 1086300 2079300 117560 1438600 2291500 3462000 2242200 1972000 1921200 1741700 2000000 3 3 1 3 3 3 3 3 3 3 3 1092100 2088200 7161.5 1222300 2270400 3492800 2118600 1781900 1808500 1692600 1974400 1016900 1945300 112710 1342100 2173500 3379800 2147300 1895400 1859300 1656700 1899500 2 2 1 2 2 2 2 2 2 2 2 74492 143860 0 91153 123970 80133 93010 74718 57664 87566 105730 69343 134040 4843.6 96549 117960 82192 94869 76626 61916 84992 100500 1 1 0 1 1 1 1 1 1 1 1 98152000 92652000 5500200 13685 787 12620 72010;72011;72012 86960;86961 86960 930 2 MLPDKDCR Unmodified 1033.4685 0.46848544 787 P23528 CFL1 Cofilin-1 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 33.699 33.764 3 0.035971 8318 20211116_3433_TMUAki_TMT10x_P_F5 55.064 20.677 1688900 3078600 9135.9 1952600 3087400 3745900 2794800 1534200 1404300 1710200 2491200 1572600 2868500 160850 2098300 2953100 3655800 2807100 1676800 1528100 1663000 2369500 2 2 1 2 2 2 2 2 2 2 2 1338100 2416000 0 1522600 2510500 3308700 2296700 1232400 1131900 1368800 1976200 1245800 2251100 120080 1643100 2401400 3213800 2304800 1361900 1232400 1331200 1880200 1 1 0 1 1 1 1 1 1 1 1 350830 662600 9135.9 430030 576890 437270 498070 301850 272440 341400 515020 326730 617410 40767 455240 551730 441970 502350 314920 295640 331800 489310 1 1 1 1 1 1 1 1 1 1 1 93223000 76533000 16690000 13686 787 12620 72013;72014 86962;86963 86962 2 MLPLSLLK Acetyl (Protein N-term) 955.57763 0.57762518 3308 Q9Y4Z0 LSM4 U6 snRNA-associated Sm-like protein LSm4 yes yes 1 0 0 0 By MS/MS By MS/MS 5 3 2 2 2 2 83.089 83.089 2 0.0073245 29015 20211116_3429_TMUAki_TMT10x_P_F2 63.48 51.575 1300000 1953800 23222 2023100 1428500 1622900 1557200 960930 923400 1100400 1486400 1210600 1823300 131220 2053000 1374400 1663100 1553200 1014600 987120 1069000 1416500 3 3 3 3 3 3 3 3 3 3 3 662170 945430 12623 962840 712960 989950 754400 468110 442560 540250 724140 616640 882250 67374 981430 685430 995090 753400 504440 473860 524670 689830 2 2 2 2 2 2 2 2 2 2 2 637830 1008300 10599 1060200 715580 632920 802820 492820 480850 560190 762290 593960 941080 63847 1071600 688970 667990 799800 510150 513260 544330 726640 1 1 1 1 1 1 1 1 1 1 1 99340000 52471000 46869000 13687 3308 12621 72015;72016;72017;72018 86964;86965;86966 86964 3 MLPQAATEDDIRGQLQSHGVQAR Oxidation (M) 2536.2452 0.24523244 1461 P98175;P98175-2;P98175-5 RBM10 RNA-binding protein 10 yes no 0 0 1 1 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 46.281 46.443 4 1.4186E-27 13213 20211116_3433_TMUAki_TMT10x_P_F5 160.77 138.33 2060400 3750500 17522 4650800 3893600 3683600 2593800 4027100 3483300 3094800 3095900 1918600 3503000 133200 4666600 3701700 3820000 2726500 4049200 3491000 3060900 2998500 2 2 1 2 2 2 2 2 2 2 2 1138100 2009900 17522 2601000 2745900 2779000 1896900 1593400 1739200 1486100 1752500 1059800 1877700 133200 2614300 2612600 2793500 1963600 1676700 1776700 1455900 1690100 1 1 1 1 1 1 1 1 1 1 1 922360 1740600 0 2049800 1147700 904600 696900 2433700 1744200 1608600 1343400 858810 1625300 0 2052200 1089100 1026500 762880 2372600 1714300 1605000 1308400 1 1 0 1 1 1 1 1 1 1 1 1300700000 511830000 788860000 13688 1461 12622 72019;72020;72021 86967;86968 86967 1962 2 MLPQAATEDDIRGQLQSHGVQAR Unmodified 2520.2503 0.25031782 1461 P98175;P98175-2;P98175-5 RBM10 RNA-binding protein 10 yes no 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 50.311 50.432 4 3.4367E-69 14013 20211116_3445_TMUAki_TMT10x_S_F6 245.92 233.24 3633900 5633800 108370 6024400 5702800 6636600 4142900 5227800 5125500 4370600 5012900 3384400 5258400 431250 6127400 5435400 6691500 4314300 5360700 5167400 4303800 4839300 2 2 2 2 2 2 2 2 2 2 2 2413100 3562300 71194 3880400 4522300 5593800 3129600 3359600 3394700 2774200 3376400 2247300 3325200 295950 3961800 4305500 5542700 3255600 3511000 3441300 2733600 3257600 1 1 1 1 1 1 1 1 1 1 1 1220900 2071500 37177 2144000 1180400 1042700 1013300 1868200 1730900 1596300 1636600 1137000 1933200 135300 2165600 1129900 1148700 1058800 1849600 1726100 1570300 1581700 1 1 1 1 1 1 1 1 1 1 1 340310000 169650000 170660000 13689 1461 12622 72022;72023 86969;86970 86970 2 MLPTIIADNAGYDSADLVAQLR Oxidation (M) 2362.1839 0.18386096 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 1 0 By MS/MS By MS/MS 5.21 1.22 3 3 8 6 4 10 14 81.441 81.431 2;3 2.6164E-83 25532 20211116_3445_TMUAki_TMT10x_S_F6 293.41 260.88 77355000 127970000 86786 119040000 85995000 113240000 92306000 81734000 80521000 90916000 101400000 72017000 119380000 3884700 121980000 82554000 115010000 92935000 84966000 83173000 88415000 97173000 25 25 5 25 25 25 25 25 25 25 25 33370000 53208000 63330 52731000 32109000 63414000 36783000 37601000 35682000 39417000 47760000 31070000 49647000 1845500 53987000 30906000 63363000 37032000 39588000 36777000 38422000 45699000 9 9 2 9 9 9 9 9 9 9 9 43985000 74762000 23455 66306000 53887000 49830000 55523000 44132000 44838000 51499000 53642000 40947000 69729000 2039200 67994000 51647000 51651000 55903000 45379000 46395000 49993000 51474000 16 16 3 16 16 16 16 16 16 16 16 30054000000 13367000000 16687000000 13690 1429 12623 72024;72025;72026;72027;72028;72029;72030;72031;72032;72033;72034;72035;72036;72037;72038;72039;72040;72041;72042;72043;72044;72045;72046;72047 86971;86972;86973;86974;86975;86976;86977;86978;86979;86980;86981;86982;86983;86984;86985;86986;86987;86988;86989;86990;86991;86992;86993;86994;86995;86996;86997;86998;86999 86995 1929 29 MLPTIIADNAGYDSADLVAQLR Unmodified 2346.1889 0.18894634 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 6.06 1.2 2 3 5 4 2 9 7 79.924 79.929 2;3 1.1679E-67 25715 20211116_3434_TMUAki_TMT10x_P_F6 242.26 229.38 26765000 42011000 52401 36200000 29241000 41519000 32864000 24394000 21321000 27647000 33969000 24918000 39179000 1119600 37420000 28107000 41584000 32789000 25764000 22644000 26867000 32377000 14 14 1 14 14 14 14 14 14 14 14 17226000 26594000 52401 22471000 15486000 29328000 19866000 14629000 13187000 16488000 21106000 16038000 24799000 736040 23318000 14953000 29124000 19715000 15671000 13988000 16027000 20115000 9 9 1 9 9 9 9 9 9 9 9 9539000 15417000 0 13730000 13755000 12190000 12999000 9765600 8134300 11158000 12863000 8879800 14379000 383540 14103000 13155000 12459000 13074000 10093000 8655900 10840000 12262000 5 5 0 5 5 5 5 5 5 5 5 23808000000 11279000000 12528000000 13691 1429 12623 72048;72049;72050;72051;72052;72053;72054;72055;72056;72057;72058;72059;72060;72061;72062;72063 87000;87001;87002;87003;87004;87005;87006;87007;87008;87009;87010;87011;87012;87013;87014;87015;87016 87007 17 MLQFVLPVATQIQQEVIK Oxidation (M) 2100.1653 0.16529777 2592 Q99622 C12orf57 Protein C10 yes yes 0 0 1 0 By MS/MS 1 0 1 1 79.716 79.716 3 0.00095359 26152 20211116_3428_TMUAki_TMT10x_P_F1 66.022 48.74 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13692 2592 12624 72064 87017 87017 2826 1 MLQFVLPVATQIQQEVIK Unmodified 2084.1704 0.17038315 2592 Q99622 C12orf57 Protein C10 yes yes 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 81.604 81.589 3 7.9943E-18 27134 20211116_3440_TMUAki_TMT10x_S_F2 155.03 133.19 2663300 4271600 52047 4337200 2794900 3278700 3079100 1418100 1555700 1667600 2896000 2480200 3986100 271160 4404200 2690200 3363600 3061200 1543200 1696800 1618400 2752100 2 2 2 2 2 2 2 2 2 2 2 1399500 2180200 6383 2327200 1142000 1905100 1312700 768390 753010 842420 1558400 1303100 2034900 118370 2357500 1099700 1941300 1305300 840830 819130 819700 1478400 1 1 1 1 1 1 1 1 1 1 1 1263800 2091400 45664 2010000 1652900 1373600 1766400 649720 802650 825170 1337500 1177000 1951200 152780 2046800 1590500 1422300 1755900 702370 877710 798680 1273700 1 1 1 1 1 1 1 1 1 1 1 972450000 257060000 715390000 13693 2592 12624 72065;72066;72067 87018;87019 87019 2 MLQHIDYR Oxidation (M) 1090.523 0.52296385 674 P14678;P63162;P14678-2;P14678-3;P63162-2 SNRPB;SNRPN Small nuclear ribonucleoprotein-associated proteins B and B';Small nuclear ribonucleoprotein-associated protein N yes no 0 0 1 0 By MS/MS 5 0 1 1 31.613 31.549 3 0.0064265 7289 20211116_3433_TMUAki_TMT10x_P_F5 74.92 65.265 954130 1353200 3544.1 1284400 1339100 1399500 951230 602490 684840 663180 1087800 888410 1262500 87799 1316900 1274500 1400700 976910 654610 722670 645190 1036900 1 1 1 1 1 1 1 1 1 1 1 954130 1353200 3544.1 1284400 1339100 1399500 951230 602490 684840 663180 1087800 888410 1262500 87799 1316900 1274500 1400700 976910 654610 722670 645190 1036900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 71386000 71386000 0 13694 674 12625 72068 87020 87020 751 1 MLQHIDYR Unmodified 1074.528 0.52804923 674 P14678;P63162;P14678-2;P14678-3;P63162-2 SNRPB;SNRPN Small nuclear ribonucleoprotein-associated proteins B and B';Small nuclear ribonucleoprotein-associated protein N yes no 0 0 0 0 By MS/MS By MS/MS 5.6 0.49 2 3 4 1 35.54 35.582 3 0.00016459 7234 20211116_3434_TMUAki_TMT10x_P_F6 150.24 125.32 1719600 2768500 9783.8 2759000 3003600 3139100 2185200 1537400 1598200 1820100 2137800 1601000 2583300 152950 2821000 2858900 3138400 2241200 1652400 1670800 1766000 2045500 7 7 3 7 7 7 7 7 7 7 7 1283200 2038900 4161 2022800 2574100 2719400 1719800 1140000 1168400 1364400 1566500 1194700 1902500 111630 2075100 2445800 2691900 1772100 1245500 1226900 1323300 1498800 6 6 2 6 6 6 6 6 6 6 6 436350 729580 5622.8 736210 429550 419660 465390 397390 429800 455680 571320 406330 680800 41321 745860 413110 446550 469090 406910 443820 442640 546750 1 1 1 1 1 1 1 1 1 1 1 153220000 117370000 35852000 13695 674 12625 72069;72070;72071;72072;72073 87021;87022;87023;87024;87025;87026;87027;87028;87029 87026 9 MLQMMVNCMETK Oxidation (M) 1530.6373 0.63728338 3404 yes no 0 0 1 0 By MS/MS 6 0 1 1 78.368 78.346 3 0.030633 25047 20211116_3434_TMUAki_TMT10x_P_F6 44.299 34.341 + 2748000 4904500 0 4011400 2918100 5590500 3498500 2544300 2107900 2883200 3237600 2558100 4573000 157290 4179000 2807900 5529400 3475200 2750700 2245300 2802000 3088200 1 1 0 1 1 1 1 1 1 1 1 2748000 4904500 0 4011400 2918100 5590500 3498500 2544300 2107900 2883200 3237600 2558100 4573000 157290 4179000 2807900 5529400 3475200 2750700 2245300 2802000 3088200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 900550000 900550000 0 13696 3404 12626 72074 87030 87030 3322 1 MLQQVPENINFPAEEEK Acetyl (Protein N-term);Oxidation (M) 2072.9725 0.97247121 1002 P41252 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 1 0 1 0 By MS/MS By MS/MS 2 0.816 1 1 1 1 2 72.092 71.838 3 5.0291E-08 26031 20211116_3441_TMUAki_TMT10x_S_F3 99.451 88.181 6956700 12439000 36837 10974000 8766300 8016700 8736700 7933600 8118600 8373300 8930400 6477700 11601000 636440 11255000 8407000 8347500 8844400 8083700 8315100 8159700 8589700 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6956700 12439000 36837 10974000 8766300 8016700 8736700 7933600 8118600 8373300 8930400 6477700 11601000 636440 11255000 8407000 8347500 8844400 8083700 8315100 8159700 8589700 3 3 3 3 3 3 3 3 3 3 3 559400000 0 559400000 13697 1002 12627 72075;72076;72077 87031;87032;87033;87034 87034 1296 4 MLQVASQASR Unmodified 1089.5601 0.56007764 2397 Q969T9 WBP2 WW domain-binding protein 2 yes yes 0 0 0 0 By MS/MS By matching 8 0 2 1 1 37.646 38.003 2 0.0016714 9213 20211116_3436_TMUAki_TMT10x_P_F8 86.18 47.374 207750 343300 98.219 413780 501990 401270 296700 165500 168870 149870 256970 193440 320600 21437 416960 476180 404260 307730 179700 180520 147020 245160 1 1 1 1 1 1 1 1 1 1 1 207750 343300 98.219 413780 501990 401270 296700 165500 168870 149870 256970 193440 320600 21437 416960 476180 404260 307730 179700 180520 147020 245160 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10284000 5357200 4926800 13698 2397 12628 72078;72079 87035 87035 1 MLQYCLQGLFHPAR Oxidation (M) 1748.8491 0.84906579 345 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 1 0 By matching By MS/MS 4 0 2 1 1 62.337 62.324 3 0.0011078 19953 20211116_3442_TMUAki_TMT10x_S_F4 69.345 57.368 2491700 4536800 26392 4222200 2719800 2568500 2795600 3357200 3344600 3318500 3514500 2320200 4232100 234370 4304900 2611300 2736300 2848700 3372400 3384500 3242600 3385000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2491700 4536800 26392 4222200 2719800 2568500 2795600 3357200 3344600 3318500 3514500 2320200 4232100 234370 4304900 2611300 2736300 2848700 3372400 3384500 3242600 3385000 1 1 1 1 1 1 1 1 1 1 1 578740000 417400000 161330000 13699 345 12629 72080;72081 87036 87036 254 1 MLSCAGADR Oxidation (M) 995.41645 0.41644987 827 P27635;Q96L21 RPL10;RPL10L 60S ribosomal protein L10;60S ribosomal protein L10-like yes no 0 0 1 0 By MS/MS By MS/MS 2.5 1.12 1 1 1 1 3 1 28.268 28.152 2 0.0037063 8402 20211116_3441_TMUAki_TMT10x_S_F3 83.623 58.224 329900 498410 5287.5 466140 397710 429630 339890 231350 224770 243870 362970 307180 464940 29776 477280 379980 435480 344220 245600 238600 237660 345870 3 3 2 3 3 3 3 3 3 3 3 201060 291340 4948.2 280660 276530 319970 203770 140490 144340 153420 219200 187220 271810 18886 287660 263400 319500 208650 152290 152100 149300 209140 2 2 1 2 2 2 2 2 2 2 2 128840 207060 339.29 185490 121170 109670 136120 90857 80428 90451 143770 119960 193130 10890 189620 116580 115980 135570 93314 86507 88356 136730 1 1 1 1 1 1 1 1 1 1 1 21354000 8232700 13121000 13700 827 12630 72082;72083;72084;72085 87037;87038 87038 997 2 MLSCAGADR Unmodified 979.42154 0.42153524 827 P27635;Q96L21 RPL10;RPL10L 60S ribosomal protein L10;60S ribosomal protein L10-like yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 32.516 32.611 2 0.00096886 6278 20211116_3444_TMUAki_TMT10x_S_F5 106.68 76.071 1792400 2880100 44499 2935000 2894800 2906300 2197000 1141900 1267200 1165100 2199900 1669200 2687700 205510 2989900 2760800 2922800 2236200 1250700 1362900 1137000 2093300 2 2 2 2 2 2 2 2 2 2 2 1703700 2727100 42427 2759800 2793800 2829400 2076600 1095400 1219800 1106300 2074300 1586700 2544800 196060 2814200 2663400 2839200 2117400 1201600 1308800 1080000 1974600 1 1 1 1 1 1 1 1 1 1 1 88662 153010 2071.8 175170 100990 76862 120430 46466 47344 58849 125590 82568 142860 9454.1 175660 97447 83682 118880 49148 54139 56965 118730 1 1 1 1 1 1 1 1 1 1 1 69632000 56756000 12876000 13701 827 12630 72086;72087 87039;87040 87040 2 MLSLDFLDDVRR Oxidation (M) 1494.7501 0.75006325 1411 P67812;P67812-4;P67812-3 SEC11A Signal peptidase complex catalytic subunit SEC11A yes no 0 0 1 1 By MS/MS By MS/MS 5.88 1.05 1 2 2 3 4 4 67.333 67.481 3 4.3958E-16 23002 20211116_3446_TMUAki_TMT10x_S_F7 174.23 148.84 21682000 36497000 230570 32607000 26188000 36858000 27994000 28804000 28919000 28793000 29080000 20189000 34041000 1998200 33603000 25165000 37105000 28330000 29692000 29386000 28121000 28047000 8 8 5 8 8 8 8 8 8 8 8 11274000 18328000 122230 17122000 12605000 23672000 14222000 14978000 14261000 14434000 14551000 10498000 17097000 1040200 17650000 12132000 23516000 14343000 15651000 14517000 14120000 14028000 5 5 3 5 5 5 5 5 5 5 5 10408000 18169000 108340 15486000 13584000 13186000 13772000 13825000 14658000 14358000 14529000 9691300 16944000 958010 15953000 13033000 13589000 13987000 14040000 14869000 14001000 14020000 3 3 2 3 3 3 3 3 3 3 3 4086000000 1812100000 2273900000 13702 1411 12631 72088;72089;72090;72091;72092;72093;72094;72095 87041;87042;87043;87044;87045;87046;87047;87048;87049 87049 1896 9 MLSLDFLDDVRR Unmodified 1478.7551 0.75514863 1411 P67812;P67812-4;P67812-3 SEC11A Signal peptidase complex catalytic subunit SEC11A yes no 0 0 0 1 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 74.852 74.913 3 2.6743E-24 26076 20211116_3446_TMUAki_TMT10x_S_F7 247.29 214.96 22218000 35652000 290210 36006000 25738000 25763000 27026000 15516000 12190000 15435000 25157000 20688000 33269000 1976500 36554000 24717000 26647000 26887000 16290000 13511000 15078000 23867000 7 7 6 7 7 7 7 7 7 7 7 8526600 13683000 138430 13675000 7931700 12398000 9730200 5513200 4804500 6134800 9044500 7940200 12768000 827600 13932000 7658900 12554000 9623300 5971500 5253700 5966000 8593600 3 3 3 3 3 3 3 3 3 3 3 13691000 21969000 151780 22331000 17807000 13365000 17296000 10003000 7385600 9300300 16113000 12748000 20501000 1149000 22621000 17058000 14093000 17264000 10319000 8256900 9112100 15273000 4 4 3 4 4 4 4 4 4 4 4 3543700000 1271300000 2272400000 13703 1411 12631 72096;72097;72098;72099;72100 87050;87051;87052;87053;87054;87055;87056;87057 87056 8 MLSQPYLLDPSITLGQYVQPQGVSVVDFVR Oxidation (M) 3364.7377 0.73771424 1033 P43897;P43897-2 TSFM Elongation factor Ts, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 2 0 3 2 1 81.151 81.141 3;4 9.5964E-11 28217 20211116_3429_TMUAki_TMT10x_P_F2 97.877 90.073 1723400 2526700 0 2597400 1789900 2355400 1669500 1475000 1478800 1526000 2019100 1604600 2358000 59157 2641100 1713100 2394600 1693800 1545600 1531900 1488300 1931000 3 3 0 3 3 3 3 3 3 3 3 1028500 1501400 0 1477600 907670 1683000 883270 901230 1011100 868280 1166200 957650 1400900 0 1512100 869700 1684300 901170 954780 1028500 849360 1120200 2 2 0 2 2 2 2 2 2 2 2 694860 1025300 0 1119800 882210 672360 786200 573780 467670 657770 852870 646980 957100 59157 1129000 843420 710340 792640 590860 503380 638950 810810 1 1 0 1 1 1 1 1 1 1 1 2445900000 2052000000 393860000 13704 1033 12632 72101;72102;72103 87058;87059;87060 87059 1335 3 MLTDKER Oxidation (M) 907.44332 0.44331654 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 1 1 By MS/MS 4 0 1 1 28.357 28.401 3 0.082849 5645 20211116_3431_TMUAki_TMT10x_P_F4 45.335 24.636 210700 351020 0 259530 319220 583950 260110 366510 372290 386930 321990 196180 327200 18933 276080 304590 569990 270400 384220 372040 377050 312170 1 1 0 1 1 1 1 1 1 1 1 210700 351020 0 259530 319220 583950 260110 366510 372290 386930 321990 196180 327200 18933 276080 304590 569990 270400 384220 372040 377050 312170 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6696100 6696100 0 13705 748 12633 72104 87061 87061 864 1 MLTGPVYSQSTALTHK Oxidation (M) 1748.8767 0.87672033 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 1 0 By MS/MS By MS/MS 3.83 3.02 2 1 1 2 3 3 45.127 45 3 8.294E-30 12097 20211116_3436_TMUAki_TMT10x_P_F8 196.8 180.01 1841500 3561400 61362 3800300 2803100 3453500 1909800 3778200 4228900 3139100 3345900 1715100 3324100 223330 3854800 2669000 3546800 2055700 3805900 4169300 3092100 3255000 3 3 3 3 3 3 3 3 3 3 3 614100 1207100 28034 1349500 1706700 2341300 1043900 1290000 1349300 1062500 1060300 572000 1126900 92342 1381500 1621500 2300400 1103000 1357800 1349100 1047100 1031800 1 1 1 1 1 1 1 1 1 1 1 1227400 2354300 33329 2450800 1096300 1112200 865860 2488200 2879600 2076500 2285700 1143100 2197200 130980 2473400 1047500 1246500 952670 2448100 2820300 2045000 2223300 2 2 2 2 2 2 2 2 2 2 2 555880000 306060000 249810000 13706 2116 12634 72105;72106;72107;72108;72109;72110 87062;87063;87064;87065;87066 87063 2602 5 MLTGPVYSQSTALTHK Unmodified 1732.8818 0.8818057 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 By MS/MS 1.5 0.5 1 1 2 51.149 51.02 3 0.014714 16087 20211116_3429_TMUAki_TMT10x_P_F2 44.391 23.55 1393600 2024300 46061 2192800 2040500 2956000 1835600 1687600 1689400 1569300 1607000 1298000 1889500 167530 2236500 1954200 2935800 1868100 1776300 1722200 1537600 1552800 1 1 1 1 1 1 1 1 1 1 1 1393600 2024300 46061 2192800 2040500 2956000 1835600 1687600 1689400 1569300 1607000 1298000 1889500 167530 2236500 1954200 2935800 1868100 1776300 1722200 1537600 1552800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 720450000 720450000 0 13707 2116 12634 72111;72112 87067 87067 1 MLVDDIGDVTITNDGATILK Oxidation (M) 2119.0719 0.071850899 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 1 0 By MS/MS By MS/MS 2.58 0.954 2 3 5 2 5 7 65.873 65.804 2;3 1.65E-17 26852 20211116_3429_TMUAki_TMT10x_P_F2 141.34 120.96 60340000 105890000 1485500 93797000 72622000 115680000 80387000 83110000 85590000 87645000 86059000 56192000 98763000 5676600 96870000 69910000 115770000 81295000 86280000 86862000 85412000 83004000 14 14 9 14 14 14 14 14 14 14 14 36285000 63036000 1183900 55618000 36707000 81896000 46380000 49101000 50022000 52621000 50302000 33793000 58792000 3302500 57656000 35508000 81072000 46652000 51683000 50740000 51247000 48516000 7 7 5 7 7 7 7 7 7 7 7 24055000 42856000 301650 38180000 35915000 33788000 34007000 34009000 35568000 35025000 35757000 22399000 39972000 2374100 39214000 34403000 34697000 34643000 34597000 36123000 34165000 34488000 7 7 4 7 7 7 7 7 7 7 7 20858000000 12430000000 8427100000 13708 712 12635 72113;72114;72115;72116;72117;72118;72119;72120;72121;72122;72123;72124 87068;87069;87070;87071;87072;87073;87074;87075;87076;87077;87078;87079;87080;87081;87082 87069 809 15 MLVDDIGDVTITNDGATILK Unmodified 2103.0769 0.076936277 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 By MS/MS By MS/MS 3.78 1.31 2 2 2 2 1 5 4 78.981 78.956 3 2.5437E-32 26283 20211116_3431_TMUAki_TMT10x_P_F4 189.64 171.72 45390000 72657000 443330 73190000 53073000 59736000 57331000 30151000 26714000 34073000 52158000 42266000 67799000 3575300 74427000 51018000 61020000 56983000 32266000 29420000 33116000 49527000 10 10 6 10 10 10 10 10 10 10 10 26946000 42706000 394190 42098000 26111000 42166000 30745000 18499000 16252000 20822000 31193000 25092000 39847000 2560900 42991000 25175000 42420000 30495000 20073000 17698000 20240000 29628000 6 6 5 6 6 6 6 6 6 6 6 18444000 29951000 49144 31091000 26962000 17571000 26586000 11652000 10462000 13251000 20965000 17173000 27952000 1014400 31436000 25844000 18601000 26488000 12193000 11721000 12876000 19899000 4 4 1 4 4 4 4 4 4 4 4 10021000000 4344500000 5676700000 13709 712 12635 72125;72126;72127;72128;72129;72130;72131;72132;72133 87083;87084;87085;87086;87087;87088;87089;87090;87091;87092;87093;87094 87086 12 MLVELSK Unmodified 818.45718 0.45717569 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 By matching By MS/MS 6.67 0.471 1 2 2 1 56.667 57.11 2 0.0062899 18751 20211116_3446_TMUAki_TMT10x_S_F7 104.21 6.6069 26980000 42115000 0 46835000 29895000 22760000 26769000 21278000 18069000 22312000 32252000 25119000 39315000 2077400 47086000 28573000 24638000 27047000 21740000 19266000 21749000 30673000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26980000 42115000 0 46835000 29895000 22760000 26769000 21278000 18069000 22312000 32252000 25119000 39315000 2077400 47086000 28573000 24638000 27047000 21740000 19266000 21749000 30673000 2 2 0 2 2 2 2 2 2 2 2 1296100000 824750000 471360000 13710 1147 12636 72134;72135;72136 87095;87096 87096 2 MLVIEQCK Unmodified 1019.5144 0.514373 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 52.003 52.248 2 0.00098332 16791 20211116_3446_TMUAki_TMT10x_S_F7 130.34 97.218 22634000 33497000 240390 39355000 34386000 28576000 23392000 24050000 24111000 22087000 28070000 21076000 31278000 2265200 39573000 32709000 29674000 24325000 24622000 24638000 21652000 26955000 4 4 4 4 4 4 4 4 4 4 4 11651000 16409000 130680 19523000 22775000 20613000 13442000 11675000 11618000 10824000 14020000 10849000 15323000 1243500 19713000 21611000 20731000 14066000 12296000 11984000 10606000 13450000 2 2 2 2 2 2 2 2 2 2 2 10984000 17088000 109710 19832000 11611000 7962500 9950400 12375000 12493000 11263000 14050000 10228000 15955000 1021600 19860000 11098000 8942900 10259000 12326000 12653000 11046000 13505000 2 2 2 2 2 2 2 2 2 2 2 861750000 516450000 345300000 13711 1079 12637 72137;72138;72139 87097;87098;87099;87100 87100 4 MLVLDEADEMLNK 2 Oxidation (M) 1551.716 0.71604551 973 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 0 0 2 0 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 59.125 58.87 3 0.00077194 20731 20211116_3441_TMUAki_TMT10x_S_F3 77.541 64.56 12207000 20830000 288430 20413000 16938000 27087000 15432000 23905000 24106000 19723000 19357000 11368000 19435000 1316500 20954000 16219000 27112000 16000000 24340000 23976000 19434000 18820000 5 5 4 5 5 5 5 5 5 5 5 8363900 13640000 119310 13690000 12932000 22745000 11817000 15938000 15815000 12868000 12816000 7788200 12728000 837990 14098000 12377000 22460000 12169000 16456000 15808000 12694000 12456000 3 3 2 3 3 3 3 3 3 3 3 3842900 7189600 169120 6722900 4006500 4342400 3614200 7966400 8291200 6854200 6540200 3579400 6707000 478510 6855800 3842000 4652000 3831300 7883500 8168100 6740000 6363300 2 2 2 2 2 2 2 2 2 2 2 1469200000 915320000 553860000 13712 973 12638 72140;72141;72142;72143 87101;87102;87103;87104;87105 87104 1245;1246 5 MLVLDEADEMLNK Oxidation (M) 1535.7211 0.72113089 973 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 0 0 1 0 By MS/MS By MS/MS 3 0.632 1 3 1 3 2 25.975 25.969 2;3 5.6542E-06 22464 20211116_3442_TMUAki_TMT10x_S_F4 97.214 82.242 128720 177400 955.07 182360 135370 222900 137020 113510 119720 113480 121160 119850 165550 10737 186290 129840 222110 138360 120930 122610 110830 116840 2 2 1 2 2 2 2 2 2 2 2 128720 177400 955.07 182360 135370 222900 137020 113510 119720 113480 121160 119850 165550 10737 186290 129840 222110 138360 120930 122610 110830 116840 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6046000 6046000 0 13713 973 12638 72144;72145;72146;72147;72148 87106;87107;87108;87109;87110 87110 1245;1246 5 MLVLDEADEMLNK Unmodified 1519.7262 0.72621627 973 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 0 0 0 0 By MS/MS 3 0 1 1 78.717 78.647 3 0.034321 28679 20211116_3441_TMUAki_TMT10x_S_F3 47.189 24.991 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13714 973 12638 72149 87111 87111 1 MLVMELASKGSLDRLLQQDK Oxidation (M) 2290.2025 0.20248792 1926 Q5S007 LRRK2 Leucine-rich repeat serine/threonine-protein kinase 2 yes yes 0 0 1 2 By MS/MS 1.5 0.5 1 1 2 40.305 40.169 5 0.015525 11644 20211116_3429_TMUAki_TMT10x_P_F2 44.382 11.832 1243100 1828100 15088 2183900 2596400 2912500 1344500 1437400 1620600 1360700 1469500 1157600 1707200 136080 2213700 2459000 2889000 1437800 1533600 1631200 1332100 1422200 1 1 1 1 1 1 1 1 1 1 1 1243100 1828100 15088 2183900 2596400 2912500 1344500 1437400 1620600 1360700 1469500 1157600 1707200 136080 2213700 2459000 2889000 1437800 1533600 1631200 1332100 1422200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 397540000 397540000 0 13715 1926 12639 72150;72151 87112 87112 2517;2518 1 MLVNENFEEYLR Oxidation (M) 1571.729 0.72899346 575 P09455-3;P09455;P09455-2 RBP1 Retinol-binding protein 1 yes no 0 0 1 0 By MS/MS 3 0 1 1 66.876 66.586 2 0.00010342 22859 20211116_3430_TMUAki_TMT10x_P_F3 91.752 76.18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13716 575 12640 72152 87113 87113 547 1 MLVSGAGDIK Oxidation (M) 1005.5165 0.51648149 982 P40227;P40227-2;Q92526;Q92526-2;Q92526-3 CCT6A;CCT6B T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2 yes no 0 0 1 0 By MS/MS By MS/MS 5 0 2 1 1 42.411 42.513 2 0.092225 11697 20211116_3433_TMUAki_TMT10x_P_F5 52.79 26.188 5474700 9185000 48292 10959000 10903000 10791000 7238500 6855900 7681300 6618100 8822600 5097700 8577200 553640 11052000 10364000 10915000 7547600 7162100 7835500 6473300 8475500 2 2 1 2 2 2 2 2 2 2 2 3228200 5811300 48292 6309500 8810700 9180100 5258300 4987300 5653100 4794400 5709200 3006100 5424400 390830 6444500 8361800 9080800 5531700 5276600 5735800 4690400 5505800 1 1 1 1 1 1 1 1 1 1 1 2246600 3373700 0 4649000 2092000 1610400 1980200 1868600 2028100 1823600 3113400 2091600 3152700 162810 4607200 2001800 1833800 2015900 1885500 2099700 1782900 2969800 1 1 0 1 1 1 1 1 1 1 1 273980000 141580000 132400000 13717 982 12641 72153;72154 87114 87114 1264 1 MLVSGAGDIK Unmodified 989.52157 0.52156686 982 P40227;P40227-2;Q92526;Q92526-2;Q92526-3 CCT6A;CCT6B T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2 yes no 0 0 0 0 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 50.375 50.547 2 3.0936E-09 13663 20211116_3434_TMUAki_TMT10x_P_F6 157.96 100.68 17632000 27399000 157030 33232000 29482000 25540000 20440000 20206000 20113000 17577000 23384000 16418000 25588000 1763000 33375000 28050000 26373000 21196000 20735000 20592000 17275000 22456000 4 4 3 4 4 4 4 4 4 4 4 8902400 13509000 72984 16408000 21438000 19581000 12971000 11302000 11213000 9486000 11968000 8289500 12616000 981650 16581000 20347000 19566000 13545000 11855000 11512000 9339300 11522000 2 2 2 2 2 2 2 2 2 2 2 8729100 13890000 84042 16824000 8044400 5959300 7469000 8904000 8899900 8090600 11416000 8128200 12971000 781340 16793000 7703200 6807300 7650500 8880000 9080800 7935200 10934000 2 2 1 2 2 2 2 2 2 2 2 684350000 242780000 441570000 13718 982 12641 72155;72156;72157;72158;72159 87115;87116;87117;87118;87119;87120 87117 6 MLVTFDEELRPLPVSVR Oxidation (M) 2016.0714 0.071397389 1609 Q13200;Q13200-3;Q13200-2 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 1 1 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 66.936 67.103 3 1.3743E-15 22312 20211116_3435_TMUAki_TMT10x_P_F7 153.72 132.69 38775000 64834000 308880 56517000 44202000 66800000 45920000 52498000 50528000 49403000 51201000 36103000 60466000 3181900 58398000 42419000 67096000 46631000 54006000 51226000 48377000 49371000 10 10 5 10 10 10 10 10 10 10 10 20516000 33596000 205480 29576000 21280000 43152000 24663000 27850000 26557000 26562000 27361000 19103000 31334000 1683100 30660000 20487000 42779000 24899000 29050000 26963000 25995000 26369000 5 5 2 5 5 5 5 5 5 5 5 18259000 31238000 103400 26941000 22922000 23648000 21257000 24648000 23971000 22841000 23840000 17000000 29132000 1498900 27739000 21932000 24317000 21733000 24956000 24263000 22382000 23002000 5 5 3 5 5 5 5 5 5 5 5 6543200000 3029700000 3513600000 13719 1609 12642 72160;72161;72162;72163;72164;72165 87121;87122;87123;87124;87125;87126;87127;87128;87129;87130 87125 2158 10 MLVTFDEELRPLPVSVR Unmodified 2000.0765 0.076482767 1609 Q13200;Q13200-3;Q13200-2 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 0 1 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 74.992 75.035 3 6.278E-70 25645 20211116_3435_TMUAki_TMT10x_P_F7 308.36 277.83 24277000 41126000 240620 39304000 26744000 32289000 29348000 18191000 15400000 20231000 27786000 22605000 38368000 2138800 40120000 25715000 33010000 29201000 19268000 16717000 19675000 26421000 7 7 4 7 7 7 7 7 7 7 7 14879000 24467000 170780 23725000 14308000 22916000 16872000 10875000 9384000 12577000 17179000 13855000 22828000 1381500 24244000 13793000 23124000 16748000 11716000 10151000 12213000 16331000 4 4 3 4 4 4 4 4 4 4 4 9397800 16658000 69838 15579000 12436000 9373200 12476000 7315800 6016200 7654300 10607000 8749800 15540000 757270 15877000 11921000 9885400 12453000 7552200 6566000 7461700 10090000 3 3 1 3 3 3 3 3 3 3 3 4095400000 2094400000 2001000000 13720 1609 12642 72166;72167;72168;72169;72170 87131;87132;87133;87134;87135;87136;87137 87133 7 MLVVGGIDR Unmodified 958.52699 0.52698659 1760 Q15046;Q15046-2 KARS Lysine--tRNA ligase yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 51.696 51.813 2 0.0019214 14569 20211116_3445_TMUAki_TMT10x_S_F6 91.853 60.564 12546000 20082000 38734 22366000 15343000 13021000 12230000 11589000 9681100 10756000 15213000 11681000 18747000 1000500 22516000 14628000 13810000 12490000 11831000 10157000 10539000 14505000 3 3 2 3 3 3 3 3 3 3 3 4070000 6361000 15321 6738300 6930800 7190400 5155500 3852100 3257500 3570300 4581600 3789700 5936900 391780 6854300 6601900 7222200 5263500 4076600 3444000 3498500 4378700 1 1 1 1 1 1 1 1 1 1 1 8475600 13721000 23412 15628000 8412300 5831100 7074900 7737400 6423500 7186000 10632000 7890900 12810000 608770 15662000 8026400 6587500 7226100 7754100 6712700 7040900 10126000 2 2 1 2 2 2 2 2 2 2 2 500980000 268830000 232160000 13721 1760 12643 72171;72172;72173 87138;87139;87140;87141 87139 4 MLYLIGLGLGDAK Unmodified 1362.7581 0.75810874 2793 Q9H2P9;Q9H2P9-3;Q9H2P9-2;Q9H2P9-4;Q9H2P9-5;Q9H2P9-6 DPH5 Diphthine synthase yes no 0 0 0 0 By MS/MS 4 0 1 1 80.955 80.94 3 1.8286E-05 27458 20211116_3442_TMUAki_TMT10x_S_F4 87.001 62.619 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13722 2793 12644 72174 87142 87142 1 MLYVPVMPGHAK 2 Oxidation (M) 1373.6836 0.68356359 5 A0AVT1;A0AVT1-2 UBA6 Ubiquitin-like modifier-activating enzyme 6 yes no 0 0 2 0 By MS/MS 8 0 1 1 41.491 41.706 3 0.016612 10731 20211116_3436_TMUAki_TMT10x_P_F8 55.401 31.796 722900 1146500 13797 1260900 1835300 1873000 1069300 1008600 1253000 993650 1299400 673190 1070200 88372 1287400 1741300 1850900 1130400 1068600 1268400 971070 1252000 1 1 1 1 1 1 1 1 1 1 1 722900 1146500 13797 1260900 1835300 1873000 1069300 1008600 1253000 993650 1299400 673190 1070200 88372 1287400 1741300 1850900 1130400 1068600 1268400 971070 1252000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 201400000 201400000 0 13723 5 12645 72175 87143 87143 5;6 1 MMAIAPNVTVMVGELVGAR Unmodified 1958.0151 0.015144839 3254 Q9Y2X3 NOP58 Nucleolar protein 58 yes yes 0 0 0 0 By matching By MS/MS 4 0 2 1 1 81.496 81.495 3 0.0031078 27704 20211116_3442_TMUAki_TMT10x_S_F4 57.798 45.006 600680 1016200 30720 970410 814080 735240 879600 488340 448800 654290 758360 559520 948090 81419 989690 784080 757970 875460 513930 486410 632180 721980 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 600680 1016200 30720 970410 814080 735240 879600 488340 448800 654290 758360 559520 948090 81419 989690 784080 757970 875460 513930 486410 632180 721980 1 1 1 1 1 1 1 1 1 1 1 234210000 134980000 99231000 13724 3254 12646 72176;72177 87144 87144 1 MMCGAPSATQPATAETQHIADQVR Acetyl (Protein N-term);2 Oxidation (M) 2644.168 0.16796968 483 P04080 CSTB Cystatin-B yes yes 1 0 2 0 By MS/MS By MS/MS 2.62 0.857 1 2 4 1 4 4 42.957 42.901 3 1.7453E-29 11571 20211116_3440_TMUAki_TMT10x_S_F2 147.21 144.24 1192400 2083300 33433 2642900 2279000 2197200 1365600 1945000 2031900 1511200 2053400 1110400 1946000 132980 2650000 2163500 2260200 1453600 1977300 2038700 1493800 1980200 12 12 6 12 12 12 12 12 12 12 12 592410 1074600 23123 1348500 1838100 1733600 1015300 870720 977890 684920 1003600 551730 1003800 84287 1362100 1742900 1722900 1071700 923280 997380 676590 967320 8 8 4 8 8 8 8 8 8 8 8 599990 1008700 10309 1294400 440860 463630 350300 1074300 1054000 826290 1049800 558660 942250 48696 1287900 420520 537280 381840 1054000 1041300 817210 1012800 4 4 2 4 4 4 4 4 4 4 4 1527900000 932970000 594900000 13725 483 12647 72178;72179;72180;72181;72182;72183;72184;72185 87145;87146;87147;87148;87149;87150;87151;87152;87153;87154;87155;87156 87154 376;377 12 MMCGAPSATQPATAETQHIADQVR Acetyl (Protein N-term);Oxidation (M) 2628.1731 0.17305506 483 P04080 CSTB Cystatin-B yes yes 1 0 1 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 48.977 48.734 3 3.7315E-08 16587 20211116_3441_TMUAki_TMT10x_S_F3 90.308 88.658 4708700 8636500 36850 8864900 6369000 7121100 5644300 6015900 6377700 5653700 7379000 4384400 8059700 428810 9001400 6089700 7337200 5785800 6161500 6491700 5536600 7087200 5 5 2 5 5 5 5 5 5 5 5 1715000 2901800 14986 2982500 3167500 4169500 2744300 2006900 2336400 1854700 2491100 1596900 2708000 175400 3054700 3027300 4125800 2793100 2145100 2400200 1817600 2398300 2 2 1 2 2 2 2 2 2 2 2 2993700 5734700 21864 5882300 3201500 2951600 2900000 4009000 4041300 3799000 4887800 2787500 5351600 253410 5946700 3062400 3211400 2992700 4016400 4091400 3719000 4688900 3 3 1 3 3 3 3 3 3 3 3 811580000 374800000 436780000 13726 483 12647 72186;72187;72188 87157;87158;87159;87160;87161 87161 376;377 5 MMDYLQGSGETPQTDVR 2 Oxidation (M) 1958.835 0.83499145 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 2 0 By MS/MS By MS/MS 2.57 0.904 1 2 3 1 3 4 39.311 39.234 2;3 2.0899E-29 12817 20211116_3441_TMUAki_TMT10x_S_F3 189.52 177.88 2327200 3910800 58029 4609500 5106400 5054300 3027000 4801800 6169100 3668600 4304600 2167200 3651800 279130 4659800 4847000 5115800 3276400 4861000 6072300 3629700 4210200 9 9 6 9 9 9 9 9 9 9 9 1175700 2000900 39203 2368700 4026100 4036400 1852800 2809100 3276900 1988600 2291000 1095000 1868400 173930 2415500 3808100 3981500 2037100 2893500 3236400 1976000 2240600 4 4 4 4 4 4 4 4 4 4 4 1151500 1909900 18826 2240800 1080300 1017900 1174100 1992600 2892200 1680000 2013500 1072200 1783400 105200 2244300 1038900 1134300 1239300 1967400 2836000 1653700 1969600 5 5 2 5 5 5 5 5 5 5 5 718530000 490340000 228200000 13727 1730 12648 72189;72190;72191;72192;72193;72194;72195 87162;87163;87164;87165;87166;87167;87168;87169;87170 87168 2325;2326 9 MMDYLQGSGETPQTDVR Oxidation (M) 1942.8401 0.84007682 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 1 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 45.855 45.955 3 8.8139E-06 14316 20211116_3430_TMUAki_TMT10x_P_F3 94.569 76.769 1750200 2588600 0 3491000 2637200 2656200 1858500 2921300 2891800 2365000 2777200 1629500 2418800 137600 3485200 2507800 2763400 1957900 2940200 2892600 2332700 2682600 2 2 0 2 2 2 2 2 2 2 2 787790 1131200 0 1495800 1829800 1982900 1158300 1203600 1123100 992200 1123200 733440 1056900 71294 1507500 1737100 1972500 1209000 1256700 1144100 977740 1083500 1 1 0 1 1 1 1 1 1 1 1 962440 1457400 0 1995200 807410 673300 700230 1717800 1768600 1372800 1654000 896030 1361900 66303 1977700 770750 790930 748950 1683500 1748500 1355000 1599100 1 1 0 1 1 1 1 1 1 1 1 202750000 144380000 58371000 13728 1730 12648 72196;72197 87171;87172 87171 2325;2326 2 MMEIMTR 2 Oxidation (M) 942.39729 0.39729433 1305 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 2 0 By MS/MS By MS/MS 5 0 2 1 1 32.338 32.39 2 0.041295 6423 20211116_3444_TMUAki_TMT10x_S_F5 58.604 42.557 657590 1039900 9119.3 1236800 1454600 1037100 854450 601970 632240 562660 838970 612300 971040 68718 1244900 1379800 1059100 891210 632830 660260 551140 802920 2 2 1 2 2 2 2 2 2 2 2 424870 651900 9119.3 779520 1241200 904280 614180 512090 576180 452180 592860 395660 608770 55156 788090 1174900 904710 654600 538660 588420 444090 571390 1 1 1 1 1 1 1 1 1 1 1 232720 387970 0 457290 213410 132840 240270 89882 56066 110480 246110 216640 362280 13562 456760 204940 154370 236610 94170 71841 107050 231530 1 1 0 1 1 1 1 1 1 1 1 50900000 17555000 33345000 13729 1305 12649 72198;72199 87173 87173 1760;1761 1 MMEIMTR Unmodified 910.40747 0.40746508 1305 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 0 0 By MS/MS 6 0 1 1 48.576 48.732 2 0.10715 13285 20211116_3445_TMUAki_TMT10x_S_F6 52.786 29.637 3702700 5693700 0 7408800 3179400 2452600 2979200 3587400 3611900 3311100 4342200 3447000 5319300 230450 7362900 3039000 2829700 3052000 3581900 3672700 3245200 4166100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3702700 5693700 0 7408800 3179400 2452600 2979200 3587400 3611900 3311100 4342200 3447000 5319300 230450 7362900 3039000 2829700 3052000 3581900 3672700 3245200 4166100 1 1 0 1 1 1 1 1 1 1 1 135070000 0 135070000 13730 1305 12649 72200 87174 87174 1 MMENGIKPVYVFDGKPPQLK 2 Oxidation (M) 2322.1752 0.17521053 978 P39748;P39748-2 FEN1 Flap endonuclease 1 yes no 0 0 2 2 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 57.121 57.01 4 0.00085507 16839 20211116_3428_TMUAki_TMT10x_P_F1 62.362 32.471 23413000 41260000 187910 36474000 29251000 47420000 26334000 54824000 61865000 48006000 40440000 21801000 38482000 2105100 37711000 27979000 47800000 27964000 55163000 60622000 47166000 39674000 7 7 4 7 7 7 7 7 7 7 7 11192000 19262000 101020 16775000 16031000 32425000 15131000 24342000 28663000 22109000 19004000 10421000 17964000 1061700 17522000 15353000 31885000 15814000 25091000 28225000 21685000 18632000 3 3 2 3 3 3 3 3 3 3 3 12221000 21998000 86881 19699000 13220000 14995000 11203000 30481000 33201000 25897000 21436000 11379000 20518000 1043300 20188000 12626000 15914000 12150000 30073000 32397000 25482000 21043000 4 4 2 4 4 4 4 4 4 4 4 5222400000 2871100000 2351300000 13731 978 12650 72201;72202;72203;72204;72205;72206 87175;87176;87177;87178;87179;87180;87181 87175 1253;1254 7 MMENGIKPVYVFDGKPPQLK Oxidation (M) 2306.1803 0.18029591 978 P39748;P39748-2 FEN1 Flap endonuclease 1 yes no 0 0 1 2 By MS/MS By MS/MS 2 0 2 1 1 60.887 60.634 4 0.0039145 18756 20211116_3440_TMUAki_TMT10x_S_F2 57.009 33.282 12646000 20049000 28254 20395000 15544000 18714000 14726000 9269600 7418300 10736000 13626000 11775000 18709000 1101000 20757000 14885000 18957000 14754000 9945200 8086900 10425000 12952000 2 2 1 2 2 2 2 2 2 2 2 9059800 13734000 28254 14230000 11948000 15740000 11411000 6328300 4822200 7597400 9500000 8435800 12817000 817910 14504000 11445000 15730000 11399000 6947200 5360100 7367700 9019500 1 1 1 1 1 1 1 1 1 1 1 3586600 6315200 0 6165300 3596300 2974200 3314700 2941200 2596200 3138300 4125800 3339400 5892200 283140 6252500 3440200 3226000 3354800 2998000 2726900 3056900 3932700 1 1 0 1 1 1 1 1 1 1 1 2130800000 1228800000 901950000 13732 978 12650 72207;72208 87182;87183 87183 1253;1254 2 MMGHRPVLVLSQNTK Acetyl (Protein N-term);2 Oxidation (M) 1783.9073 0.90730895 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 1 0 2 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 35.007 35.217 3 1.9377E-07 8045 20211116_3428_TMUAki_TMT10x_P_F1 78.191 64.528 1689600 2932300 14155 3276700 2922900 2571500 1726400 1717700 1832900 1541100 2322400 1573100 2737400 156170 3307900 2772500 2644000 1817000 1784300 1877300 1512400 2225200 7 7 2 7 7 7 7 7 7 7 7 831460 1338400 1160.2 1591100 2307200 2087900 1247400 731960 777770 696860 1102500 774130 1249800 84486 1612700 2185200 2065900 1306200 811580 823320 682040 1053500 4 4 1 4 4 4 4 4 4 4 4 858100 1593900 12995 1685600 615740 483680 478970 985790 1055100 844270 1220000 799000 1487600 71684 1695200 587220 578170 510830 972710 1054000 830390 1171800 3 3 1 3 3 3 3 3 3 3 3 182490000 93458000 89035000 13733 1094 12651 72209;72210;72211;72212 87184;87185;87186;87187;87188;87189;87190 87185 1449;1450 7 MMGHRPVLVLSQNTK Acetyl (Protein N-term);Oxidation (M) 1767.9124 0.91239433 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 1 0 1 1 By MS/MS By MS/MS 8 0 2 1 1 39.141 39.44 3 4.6593E-10 9795 20211116_3436_TMUAki_TMT10x_P_F8 66.387 42.196 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13734 1094 12651 72213;72214 87191;87192 87191 1449;1450 2 MMGHRPVLVLSQNTKR Acetyl (Protein N-term);2 Oxidation (M) 1940.0084 0.0084199769 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 1 0 2 2 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 31.31 31.203 4 3.6698E-11 9490 20211116_3441_TMUAki_TMT10x_S_F3 108.34 90.672 1503200 2468800 15616 2267500 2880100 2851000 2054600 2590100 2757700 1839800 2426900 1399700 2302900 148740 2336100 2741200 2862600 2149000 2624200 2763000 1827700 2351400 5 5 4 5 5 5 5 5 5 5 5 1072300 1708700 10426 1583600 2317000 2467900 1634500 1726500 1875300 1257000 1678300 998440 1594000 106320 1637600 2204500 2442900 1701100 1778800 1890300 1247000 1625100 3 3 2 3 3 3 3 3 3 3 3 430880 760100 5190.5 683870 563150 383080 420050 863570 882370 582810 748590 401230 708970 42413 698550 536690 419610 447870 845370 872680 580770 726280 2 2 2 2 2 2 2 2 2 2 2 486300000 216380000 269920000 13735 1094 12652 72215;72216;72217;72218 87193;87194;87195;87196;87197 87197 1449;1450 5 MMGHRPVLVLSQNTKR Acetyl (Protein N-term);Oxidation (M) 1924.0135 0.013505355 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 1 0 1 2 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 33.919 33.811 4 0.0074899 10532 20211116_3441_TMUAki_TMT10x_S_F3 57.499 44.363 970800 1450600 11917 1769200 1896200 1607900 1025200 1210900 1213100 970550 1606600 904000 1354800 104550 1780000 1797000 1639000 1091200 1244000 1239800 957790 1537700 2 2 2 2 2 2 2 2 2 2 2 670290 910000 5961.3 1134400 1640000 1393700 808090 756250 681340 536780 1093300 624150 849970 74709 1145300 1551900 1389500 859260 794500 713310 533290 1041900 1 1 1 1 1 1 1 1 1 1 1 300510 540610 5955.9 634820 256220 214180 217070 454700 531730 433760 513370 279850 504800 29845 634670 245050 249540 231970 449540 526520 424500 495800 1 1 1 1 1 1 1 1 1 1 1 97939000 68427000 29512000 13736 1094 12652 72219;72220 87198;87199 87199 1449;1450 2 MMLDDIVSR Unmodified 1078.5151 0.51510128 2380 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 0 0 By MS/MS 4 0 1 1 60.672 60.796 2 0.0063842 18839 20211116_3431_TMUAki_TMT10x_P_F4 76.221 54.694 3216900 4944600 56973 5752100 4449500 5500900 4234000 2954900 2381300 2665300 3976700 2995700 4616800 337060 5807300 4264400 5562200 4248600 3124200 2560200 2615000 3786800 1 1 1 1 1 1 1 1 1 1 1 3216900 4944600 56973 5752100 4449500 5500900 4234000 2954900 2381300 2665300 3976700 2995700 4616800 337060 5807300 4264400 5562200 4248600 3124200 2560200 2615000 3786800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 163150000 163150000 0 13737 2380 12653 72221 87200 87200 1 MMLGTEGGEGFVVK Acetyl (Protein N-term);2 Oxidation (M) 1527.6949 0.69491614 894 P31943 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes yes 1 0 2 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 62.969 62.775 2 2.2359E-19 22294 20211116_3441_TMUAki_TMT10x_S_F3 133.81 120.75 32724000 53729000 301140 48084000 36957000 55364000 35633000 50267000 52476000 46738000 44013000 30469000 50114000 2788000 49561000 35404000 55837000 36735000 51259000 52348000 45792000 42720000 13 13 5 13 13 13 13 13 13 13 13 18279000 28072000 183760 25677000 20348000 38972000 21168000 25632000 25214000 23849000 22105000 17019000 26186000 1479000 26562000 19527000 38583000 21554000 26681000 25364000 23365000 21420000 7 7 2 7 7 7 7 7 7 7 7 14445000 25657000 117390 22407000 16609000 16391000 14465000 24635000 27262000 22890000 21908000 13450000 23928000 1309000 22998000 15877000 17255000 15181000 24578000 26984000 22427000 21300000 6 6 3 6 6 6 6 6 6 6 6 8741300000 4675800000 4065400000 13738 894 12654 72222;72223;72224;72225;72226;72227;72228;72229 87201;87202;87203;87204;87205;87206;87207;87208;87209;87210;87211;87212;87213 87211 1092;1093 13 MMLGTEGGEGFVVK Acetyl (Protein N-term);Oxidation (M) 1511.7 0.70000151 894 P31943 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes yes 1 0 1 0 By MS/MS By MS/MS 2.47 1.02 3 5 4 3 7 8 74.227 74.11 2 6.2108E-25 25957 20211116_3429_TMUAki_TMT10x_P_F2 141.93 123.66 37461000 57838000 312980 56642000 41464000 51128000 43258000 29947000 28636000 33008000 43153000 34880000 53965000 3187800 57786000 39804000 51950000 43332000 31608000 30287000 32111000 41178000 13 13 4 13 13 13 13 13 13 13 13 20014000 30346000 128770 29291000 19435000 33817000 23020000 16665000 16028000 18405000 22908000 18635000 28312000 1667500 30024000 18726000 33786000 22947000 17862000 16856000 17904000 21886000 7 7 3 7 7 7 7 7 7 7 7 17448000 27492000 184210 27351000 22029000 17311000 20238000 13282000 12608000 14602000 20244000 16246000 25652000 1520300 27763000 21078000 18164000 20386000 13747000 13431000 14207000 19292000 6 6 1 6 6 6 6 6 6 6 6 5632200000 2586900000 3045300000 13739 894 12654 72230;72231;72232;72233;72234;72235;72236;72237;72238;72239;72240;72241;72242;72243;72244 87214;87215;87216;87217;87218;87219;87220;87221;87222;87223;87224;87225;87226;87227;87228;87229;87230;87231 87217 1092;1093 18 MMLGTEGGEGFVVK Acetyl (Protein N-term) 1495.7051 0.70508689 894 P31943 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes yes 1 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 79.44 79.409 2 1.8714E-14 28007 20211116_3430_TMUAki_TMT10x_P_F3 120.09 102.36 10112000 15771000 128690 16828000 9890100 12708000 11991000 6613600 5823300 7227200 10614000 9416200 14720000 740500 17032000 9541500 13063000 11862000 7050200 6364100 7033100 10091000 4 4 2 4 4 4 4 4 4 4 4 7984600 12801000 128690 13738000 7482300 11074000 9769000 5452600 4816000 5823000 8650200 7435100 11948000 740500 13909000 7237400 11319000 9636300 5838600 5252200 5671700 8225900 3 3 2 3 3 3 3 3 3 3 3 2127700 2970300 0 3090200 2407800 1634100 2221700 1161100 1007300 1404200 1964200 1981100 2772100 0 3122200 2304000 1743900 2225700 1211600 1111900 1361400 1865200 1 1 0 1 1 1 1 1 1 1 1 3580400000 2100100000 1480300000 13740 894 12654 72245;72246;72247;72248;72249 87232;87233;87234;87235 87233 4 MMLTHLVVRPGLGSK 2 Oxidation (M) 1669.9008 0.90076701 1735;1571 Q14839;Q14839-2;Q8TDI0;Q12873;Q12873-3;Q12873-2 CHD4;CHD5;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3 no no 0 0 2 1 By MS/MS By MS/MS 3 0.894 2 1 2 2 3 40.367 40.315 4 2.9277E-05 10544 20211116_3431_TMUAki_TMT10x_P_F4 95.582 81.324 2416100 3929600 36200 4360100 3773200 4374700 2710100 4489800 5152500 3851100 3858700 2249700 3668400 228310 4417900 3591700 4458300 2880100 4540000 5089000 3787500 3762400 4 4 3 4 4 4 4 4 4 4 4 1015400 1560000 0 1859900 2349100 3068000 1410500 1998900 2493200 1705200 1620900 945240 1456700 78118 1894300 2227200 3026900 1513300 2077500 2458100 1677500 1590600 1 1 0 1 1 1 1 1 1 1 1 1400700 2369700 36200 2500200 1424100 1306700 1299600 2490800 2659300 2145900 2237900 1304400 2211700 150190 2523600 1364500 1431400 1366800 2462400 2630900 2110000 2171800 3 3 3 3 3 3 3 3 3 3 3 840130000 727500000 112620000 13741 1735;1571 12655 72250;72251;72252;72253;72254 87236;87237;87238;87239 87236 2115;2116 4 MMLTHLVVRPGLGSK Unmodified 1637.9109 0.91093776 1735;1571 Q14839;Q14839-2;Q8TDI0;Q12873;Q12873-3;Q12873-2 CHD4;CHD5;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3 no no 0 0 0 1 By MS/MS 7 0 1 1 51.745 52.247 4 1.0502E-14 16754 20211116_3446_TMUAki_TMT10x_S_F7 157.07 143.04 2672100 4331300 61205 5260500 2770700 1752500 2327300 2075000 1931800 1991400 3134200 2488300 4045000 267270 5248500 2648400 2008900 2371600 2091000 2025200 1948400 2986300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2672100 4331300 61205 5260500 2770700 1752500 2327300 2075000 1931800 1991400 3134200 2488300 4045000 267270 5248500 2648400 2008900 2371600 2091000 2025200 1948400 2986300 2 2 1 2 2 2 2 2 2 2 2 230580000 0 230580000 13742 1735;1571 12655 72255 87240;87241 87240 2 MMNTIIFHTK 2 Oxidation (M) 1266.6101 0.6100643 3236 Q9Y2A7;Q9Y2A7-2 NCKAP1 Nck-associated protein 1 yes no 0 0 2 0 By MS/MS 8 0 1 1 37.472 37.745 3 0.026894 9082 20211116_3436_TMUAki_TMT10x_P_F8 53.013 37.122 245920 408400 4982.9 417410 498670 609180 296430 510260 500050 455990 422520 229010 381110 28572 428060 473360 606540 317560 522160 497050 447570 409990 1 1 1 1 1 1 1 1 1 1 1 245920 408400 4982.9 417410 498670 609180 296430 510260 500050 455990 422520 229010 381110 28572 428060 473360 606540 317560 522160 497050 447570 409990 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30747000 30747000 0 13743 3236 12656 72256 87242 87242 3221;3222 1 MMPTPVILLK Acetyl (Protein N-term) 1183.6709 0.67087364 2609 Q99832 CCT7 T-complex protein 1 subunit eta yes yes 1 0 0 0 By MS/MS By MS/MS 4.38 2.56 2 2 3 2 2 2 6 7 82.107 82.101 2 0.00075335 27241 20211116_3436_TMUAki_TMT10x_P_F8 83.005 67.923 48470000 70975000 138540 83424000 49115000 37679000 55671000 15717000 13390000 17440000 44245000 45127000 66274000 3660700 83543000 47234000 40713000 54818000 17140000 16567000 16962000 41727000 11 11 3 11 11 11 11 11 11 11 11 26004000 37232000 121790 42441000 22860000 24505000 29039000 9428400 8325500 10407000 23016000 24212000 34761000 2079200 42661000 22073000 25731000 28491000 10376000 9897400 10124000 21748000 6 6 2 6 6 6 6 6 6 6 6 22465000 33743000 16753 40983000 26254000 13174000 26632000 6288500 5064900 7033000 21229000 20915000 31513000 1581500 40882000 25162000 14981000 26327000 6763500 6670000 6838100 19978000 5 5 1 5 5 5 5 5 5 5 5 7486400000 3474500000 4011900000 13744 2609 12657 72257;72258;72259;72260;72261;72262;72263;72264;72265;72266;72267;72268;72269 87243;87244;87245;87246;87247;87248;87249;87250;87251;87252;87253;87254 87248 12 MMPTPVILLK Acetyl (Protein N-term);Oxidation (M) 1199.6658 0.66578826 2609 Q99832 CCT7 T-complex protein 1 subunit eta yes yes 1 0 1 0 By MS/MS By MS/MS 5.25 2.77 1 1 2 3 1 48.623 48.608 2 0.00086968 26387 20211116_3436_TMUAki_TMT10x_P_F8 83.005 69.011 9479300 13759000 2511.1 12708000 8960000 12159000 10816000 4135700 3105800 5837600 9122600 8824500 12835000 575940 13030000 8624800 12240000 10635000 4660800 3710500 5631200 8614000 2 2 1 2 2 2 2 2 2 2 2 9402500 13640000 0 12571000 8868000 12085000 10727000 4073300 3046100 5772100 9046300 8753000 12724000 567030 12893000 8536500 12161000 10545000 4596600 3647900 5567400 8540900 1 1 0 1 1 1 1 1 1 1 1 76724 118720 2511.1 137100 92001 74441 89179 62390 59715 65471 76311 71456 110850 8915.2 137630 88296 79429 89694 64134 62628 63816 73101 1 1 1 1 1 1 1 1 1 1 1 3070000000 3068400000 1648500 13745 2609 12657 72270;72271;72272;72273 87255;87256;87257;87258 87256 2848;2849 4 MMPTPVILLK Acetyl (Protein N-term);2 Oxidation (M) 1215.6607 0.66070288 2609 Q99832 CCT7 T-complex protein 1 subunit eta yes yes 1 0 2 0 By MS/MS By MS/MS 6.2 0.748 1 2 2 2 3 73.457 73.524 2 0.00024773 23623 20211116_3445_TMUAki_TMT10x_S_F6 86.011 70.929 41260000 69887000 458930 64347000 50876000 67974000 51897000 55484000 54179000 54346000 56482000 38420000 65191000 3893200 66090000 48830000 68743000 52659000 57009000 55100000 53124000 54414000 9 9 7 9 9 9 9 9 9 9 9 20718000 34026000 192310 32099000 22887000 41390000 26111000 25430000 24304000 24569000 26418000 19291000 31743000 1846700 33021000 22033000 41234000 26261000 26636000 24879000 24031000 25419000 4 4 3 4 4 4 4 4 4 4 4 20542000 35860000 266620 32248000 27989000 26584000 25786000 30054000 29875000 29777000 30064000 19129000 33448000 2046400 33068000 26797000 27509000 26398000 30373000 30221000 29093000 28996000 5 5 4 5 5 5 5 5 5 5 5 5547700000 2256100000 3291700000 13746 2609 12657 72274;72275;72276;72277;72278 87259;87260;87261;87262;87263;87264;87265;87266;87267 87265 2848;2849 9 MMVADVFSHR 2 Oxidation (M) 1223.5427 0.54271301 1163 P51784 USP11 Ubiquitin carboxyl-terminal hydrolase 11 yes yes 0 0 2 0 By MS/MS 5 0 1 1 35.611 35.571 3 0.088585 8935 20211116_3433_TMUAki_TMT10x_P_F5 40.039 28.192 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13747 1163 12658 72279 87268 87268 1549;1550 1 MMVAGFK Unmodified 782.3819 0.38190226 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 By MS/MS 3 0 1 1 54.704 54.324 2 0.0589 18901 20211116_3441_TMUAki_TMT10x_S_F3 64.276 49.194 10762000 16927000 0 20228000 8750100 5149500 9271400 4684500 4242100 4941100 9831300 10019000 15807000 782590 20178000 8397800 6165700 9221400 4794100 4734000 4815100 9310900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10762000 16927000 0 20228000 8750100 5149500 9271400 4684500 4242100 4941100 9831300 10019000 15807000 782590 20178000 8397800 6165700 9221400 4794100 4734000 4815100 9310900 1 1 0 1 1 1 1 1 1 1 1 160810000 0 160810000 13748 1474 12659 72280 87269 87269 1 MMVAGFKK Unmodified 910.47687 0.47686528 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 1 By MS/MS 5 0 1 1 47.151 47.315 3 0.0069941 12441 20211116_3444_TMUAki_TMT10x_S_F5 68.787 35.666 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13749 1474 12660 72281 87270 87270 1 MMVDKDGDVTVTNDGATILSMMDVDHQIAK Unmodified 3249.5026 0.50257062 1079 P48643 CCT5 T-complex protein 1 subunit epsilon yes yes 0 0 0 1 By MS/MS 5 0 1 1 77.426 77.437 4 0.053906 24779 20211116_3444_TMUAki_TMT10x_S_F5 37.344 25.264 5780300 8767400 3674.3 9826500 7018300 3956500 5912900 3556000 3382300 4183500 6336600 5382000 8184900 499990 9862100 6701900 4383700 5977200 3654500 3656500 4060000 6021300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5780300 8767400 3674.3 9826500 7018300 3956500 5912900 3556000 3382300 4183500 6336600 5382000 8184900 499990 9862100 6701900 4383700 5977200 3654500 3656500 4060000 6021300 1 1 1 1 1 1 1 1 1 1 1 1054500000 0 1054500000 13750 1079 12661 72282 87271 87271 1 MNAGSDPVVIVSAAR Acetyl (Protein N-term);Oxidation (M) 1543.7664 0.7664416 2706 Q9BWD1 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes yes 1 0 1 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 54.254 54.004 2 8.7305E-20 17638 20211116_3430_TMUAki_TMT10x_P_F3 142.89 124.67 5310500 8629000 89827 8984600 7172900 8994600 5960900 8047700 7582800 6843000 7894200 4944900 8053100 510520 9140800 6850100 9141200 6160000 8194100 7654300 6732900 7605600 4 4 2 4 4 4 4 4 4 4 4 2507200 4220800 6226.1 4315800 4365900 6204100 3493800 3846000 3704800 3132800 3678700 2334300 3938800 208940 4424300 4162700 6150900 3596100 4008000 3758800 3089000 3549500 2 2 1 2 2 2 2 2 2 2 2 2803300 4408100 83601 4668800 2807000 2790500 2467000 4201700 3878000 3710200 4215500 2610700 4114200 301580 4716400 2687400 2990300 2563900 4186100 3895400 3643800 4056100 2 2 1 2 2 2 2 2 2 2 2 1755700000 810790000 944900000 13751 2706 12662 72283;72284;72285;72286;72287 87272;87273;87274;87275;87276 87274 2908 5 MNAGSDPVVIVSAAR Acetyl (Protein N-term) 1527.7715 0.77152697 2706 Q9BWD1 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes yes 1 0 0 0 By MS/MS 3 0 1 1 65.354 64.896 2 1.6726E-06 23256 20211116_3441_TMUAki_TMT10x_S_F3 81.002 73.312 2250900 3901000 32096 3616800 2195700 2257900 2367600 2194400 2195600 2489700 2741700 2096000 3638900 215750 3689500 2111600 2382600 2387300 2243100 2260600 2419400 2627900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2250900 3901000 32096 3616800 2195700 2257900 2367600 2194400 2195600 2489700 2741700 2096000 3638900 215750 3689500 2111600 2382600 2387300 2243100 2260600 2419400 2627900 1 1 1 1 1 1 1 1 1 1 1 268420000 0 268420000 13752 2706 12662 72288 87277 87277 1 MNAPPAFESFLLFEGEK Acetyl (Protein N-term);Oxidation (M) 1983.9288 0.92881548 1177 P52435;Q9GZM3;Q9H1A7;Q9GZM3-2 POLR2J;POLR2J2;POLR2J3 DNA-directed RNA polymerase II subunit RPB11-a;DNA-directed RNA polymerase II subunit RPB11-b1;DNA-directed RNA polymerase II subunit RPB11-b2 yes no 1 0 1 0 By MS/MS By MS/MS 2.91 1.31 1 4 3 2 1 5 6 82.631 82.621 2;3 2.7544E-30 28161 20211116_3442_TMUAki_TMT10x_S_F4 163.99 150.08 8055000 13401000 82890 12700000 8370800 14165000 9909200 7634600 8378100 8760600 10203000 7500500 12502000 732970 13027000 8068900 14193000 9923500 8125700 8655000 8509700 9786200 10 10 8 10 10 10 10 10 10 10 10 6314100 10369000 64345 9999600 6061700 12005000 7491300 6076500 6460300 6794300 7933600 5879400 9673800 566630 10257000 5851200 11973000 7492100 6498800 6669700 6606100 7607700 6 6 5 6 6 6 6 6 6 6 6 1740900 3032200 18546 2700300 2309100 2160200 2417900 1558200 1917800 1966300 2269700 1621100 2828100 166340 2770200 2217700 2220400 2431400 1626800 1985400 1903600 2178600 4 4 3 4 4 4 4 4 4 4 4 1060000000 692750000 367260000 13753 1177 12663 72289;72290;72291;72292;72293;72294;72295;72296;72297;72298;72299 87278;87279;87280;87281;87282;87283;87284;87285;87286;87287;87288;87289;87290 87289 1586 13 MNAPPAFESFLLFEGEK Acetyl (Protein N-term) 1967.9339 0.93390085 1177 P52435;Q9GZM3;Q9H1A7;Q9GZM3-2 POLR2J;POLR2J2;POLR2J3 DNA-directed RNA polymerase II subunit RPB11-a;DNA-directed RNA polymerase II subunit RPB11-b1;DNA-directed RNA polymerase II subunit RPB11-b2 yes no 1 0 0 0 By MS/MS By MS/MS 3.6 1.36 2 4 2 2 5 5 83.9 83.892 2;3 7.5972E-22 30825 20211116_3441_TMUAki_TMT10x_S_F3 131.13 116.97 1516500 2460800 11724 2652400 1472400 1617200 1770000 1397400 737180 859900 1634100 1412000 2296900 123540 2676800 1419200 1706400 1747900 1415800 826970 861970 1548600 4 4 2 4 4 4 4 4 4 4 4 1078100 1692900 0 1864100 962080 1228100 1171600 1080200 464220 531330 1123700 1003800 1580300 75261 1880100 926950 1287000 1155500 1089300 526620 541540 1063600 2 2 0 2 2 2 2 2 2 2 2 438380 767930 11724 788250 510330 389050 598460 317220 272950 328570 510360 408270 716630 48279 796740 492250 419340 592350 326500 300350 320430 484970 2 2 2 2 2 2 2 2 2 2 2 167370000 124630000 42739000 13754 1177 12663 72300;72301;72302;72303;72304;72305;72306;72307;72308;72309 87291;87292;87293;87294;87295;87296;87297;87298 87295 8 MNDLTIIQTTQGFCR Unmodified 1796.8549 0.85493903 2466 Q96G03 PGM2 Phosphoglucomutase-2 yes yes 0 0 0 0 By MS/MS 8 0 1 1 67.689 67.809 3 4.1854E-06 21384 20211116_3436_TMUAki_TMT10x_P_F8 101.53 77.852 2808000 5020800 58101 4738200 2838700 5938200 3289500 3431500 2751600 3175000 3343600 2614900 4683800 287380 4871700 2736800 5919100 3296400 3607700 2843900 3111500 3207200 1 1 1 1 1 1 1 1 1 1 1 2808000 5020800 58101 4738200 2838700 5938200 3289500 3431500 2751600 3175000 3343600 2614900 4683800 287380 4871700 2736800 5919100 3296400 3607700 2843900 3111500 3207200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 323230000 323230000 0 13755 2466 12664 72310 87299 87299 1 MNDTVTIR Acetyl (Protein N-term);Oxidation (M) 1006.4753 0.47534495 1371 P62847;P62847-2;P62847-3;P62847-4 RPS24 40S ribosomal protein S24 yes no 1 0 1 0 By MS/MS By MS/MS 2 1.69 4 2 1 3 4 33.276 33.304 2 0.0011225 9363 20211116_3439_TMUAki_TMT10x_S_F1 101.64 54.576 1877300 2959200 6305.1 3119900 2852000 2470700 2031200 1655300 1617000 1561100 2309900 1747800 2761800 141790 3161700 2712400 2538700 2090500 1721400 1687700 1528600 2206900 7 7 3 7 7 7 7 7 7 7 7 959240 1468900 2264.2 1579900 1877900 1690100 1079700 827070 804860 818140 1166100 893050 1371100 80172 1605600 1779700 1695600 1128400 884190 843650 799400 1113700 2 2 1 2 2 2 2 2 2 2 2 918080 1490300 4040.9 1540000 974140 780570 951540 828260 812110 742990 1143900 854710 1390800 61614 1556100 932630 843100 962050 837160 844050 729150 1093200 5 5 2 5 5 5 5 5 5 5 5 82646000 49004000 33642000 13756 1371 12665 72311;72312;72313;72314;72315;72316;72317 87300;87301;87302;87303;87304;87305;87306;87307;87308 87303 1845 9 MNDTVTIR Acetyl (Protein N-term) 990.48043 0.48043033 1371 P62847;P62847-2;P62847-3;P62847-4 RPS24 40S ribosomal protein S24 yes no 1 0 0 0 By MS/MS 2 0 1 1 43.449 43.467 2 0.0013422 11581 20211116_3440_TMUAki_TMT10x_S_F2 101.64 68.093 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13757 1371 12665 72318 87309 87309 1 MNGFIDQIDGIVHFETR Oxidation (M) 2006.952 0.95201053 2659 Q9BT78 COPS4 COP9 signalosome complex subunit 4 yes yes 0 0 1 0 By MS/MS 4 0 1 1 76.28 76.303 3 0.0078096 25169 20211116_3431_TMUAki_TMT10x_P_F4 54.368 35.773 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13758 2659 12666 72319 87310 87310 2884 1 MNGPEDLPK Acetyl (Protein N-term);Oxidation (M) 1057.475 0.4750106 1871 Q16881;Q16881-3;Q16881-4;Q16881-5;Q16881-2;Q16881-6 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 1 0 1 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 42.4 42.316 2 0.0039012 11073 20211116_3440_TMUAki_TMT10x_S_F2 51.193 36.675 1755500 3062400 36600 3327300 3775800 3688500 2371300 2852200 3108700 2481800 3017600 1634800 2858500 207950 3381100 3587400 3716500 2501600 2931100 3127100 2439100 2913800 2 2 2 2 2 2 2 2 2 2 2 1144600 1869000 14105 2075300 3114400 3075100 1782900 1727300 1876400 1563900 1861100 1065800 1744800 135630 2117500 2953600 3040800 1881000 1819300 1904300 1534100 1795800 1 1 1 1 1 1 1 1 1 1 1 610910 1193400 22495 1252000 661440 613320 588380 1125000 1232300 917910 1156500 568990 1113800 72321 1263500 633740 675700 620570 1111800 1222800 905010 1118000 1 1 1 1 1 1 1 1 1 1 1 161360000 129140000 32224000 13759 1871 12667 72320;72321;72322 87311;87312 87312 2486 2 MNIFGGFR Unmodified 940.45891 0.45890703 1983 Q6NUK1;Q6NUK1-2 SLC25A24 Calcium-binding mitochondrial carrier protein SCaMC-1 yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 64.231 64.204 2 0.0015472 20194 20211116_3431_TMUAki_TMT10x_P_F4 120.45 105.3 16738000 27110000 54230 27923000 18704000 20258000 18998000 10435000 9598900 12440000 18994000 15584000 25299000 1395300 28314000 17940000 20890000 18964000 11165000 10510000 12067000 18032000 4 4 1 4 4 4 4 4 4 4 4 8453700 13453000 0 13958000 9706700 13170000 10202000 5276600 4719900 6488700 9252100 7870800 12555000 665490 14192000 9316200 13288000 10153000 5799500 5202500 6287300 8784800 2 2 0 2 2 2 2 2 2 2 2 8283900 13656000 54230 13965000 8997000 7088100 8795600 5158100 4879000 5951200 9742400 7713400 12744000 729860 14122000 8623800 7601700 8811000 5365600 5307500 5779600 9247600 2 2 1 2 2 2 2 2 2 2 2 588410000 271020000 317390000 13760 1983 12668 72323;72324;72325 87313;87314;87315;87316;87317 87313 5 MNIFGGFR Oxidation (M) 956.45382 0.45382165 1983 Q6NUK1;Q6NUK1-2 SLC25A24 Calcium-binding mitochondrial carrier protein SCaMC-1 yes no 0 0 1 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 52.525 52.261 2 0.038262 15176 20211116_3440_TMUAki_TMT10x_S_F2 65.777 49.266 11206000 18323000 79584 16932000 14930000 18612000 12513000 19190000 18085000 15993000 16995000 10434000 17092000 992950 17397000 14255000 18870000 12991000 19386000 18116000 15751000 16428000 3 3 2 3 3 3 3 3 3 3 3 4739200 7485000 57820 7091100 7768100 11879000 6573700 7466200 7332900 6327300 6997900 4413100 6982800 489220 7333500 7421900 11707000 6754000 7779700 7414800 6226500 6760900 1 1 1 1 1 1 1 1 1 1 1 6466800 10838000 21765 9841200 7161700 6733200 5939400 11724000 10753000 9665900 9996800 6020900 10110000 503730 10064000 6833500 7163200 6237500 11607000 10701000 9525000 9666900 2 2 1 2 2 2 2 2 2 2 2 552540000 293230000 259320000 13761 1983 12668 72326;72327;72328 87318 87318 2537 1 MNILAPVRR Acetyl (Protein N-term);Oxidation (M) 1126.6281 0.62809762 2738 Q9BZG1;Q9BZG1-4;Q9BZG1-2 RAB34 Ras-related protein Rab-34 yes no 1 0 1 1 By MS/MS 8 0 1 1 37.067 37.354 2 0.0015857 8977 20211116_3436_TMUAki_TMT10x_P_F8 64.757 46.991 249550 384370 8103.4 437110 713010 633180 397700 317450 289220 285550 375530 232420 358850 34733 445130 676230 625850 416530 337740 302040 280190 359590 1 1 1 1 1 1 1 1 1 1 1 249550 384370 8103.4 437110 713010 633180 397700 317450 289220 285550 375530 232420 358850 34733 445130 676230 625850 416530 337740 302040 280190 359590 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7054000 7054000 0 13762 2738 12669 72329 87319 87319 2927 1 MNKSEDDESGAGELTREELR Oxidation (M) 2281.0128 0.01283247 913 P33993;P33993-3;P33993-2 MCM7 DNA replication licensing factor MCM7 yes no 0 0 1 2 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 34.425 34.307 4 2.3681E-24 7709 20211116_3428_TMUAki_TMT10x_P_F1 164.89 136.93 1675900 2747000 10129 3737600 5210000 4423300 2592100 3774900 5288700 2297800 3703200 1560500 2566900 194930 3753200 4930200 4449300 2849600 3826500 5206100 2305000 3621400 4 4 2 4 4 4 4 4 4 4 4 909880 1436000 0 2173400 4572100 3914900 1991600 2179500 3085600 1293800 2119500 847170 1342700 123780 2191200 4318800 3841900 2189000 2277000 3056900 1300100 2074500 2 2 0 2 2 2 2 2 2 2 2 766000 1311000 10129 1564100 637950 508340 600440 1595400 2203100 1004000 1583700 713300 1224200 71154 1562000 611370 607420 660630 1549500 2149100 1004900 1546900 2 2 2 2 2 2 2 2 2 2 2 748610000 583190000 165420000 13763 913 12670 72330;72331;72332;72333 87320;87321;87322;87323 87320 1138 4 MNKSEDDESGAGELTREELR Unmodified 2265.0179 0.017917848 913 P33993;P33993-3;P33993-2 MCM7 DNA replication licensing factor MCM7 yes no 0 0 0 2 By MS/MS By MS/MS 1.67 0.943 2 1 1 2 38.419 38.291 4 3.8068E-32 9332 20211116_3428_TMUAki_TMT10x_P_F1 192.63 169.34 1359200 2147400 39253 3151000 2479000 1808000 1562700 1549300 1533700 1377400 2227100 1265800 2007500 162030 3123500 2356100 1918900 1632100 1583100 1586200 1352300 2127000 3 3 2 3 3 3 3 3 3 3 3 409940 639000 0 944800 1705400 1156400 794340 432610 483600 404350 693180 381670 597390 49211 945420 1612100 1148700 843750 475530 513010 396070 662200 1 1 0 1 1 1 1 1 1 1 1 949260 1508400 39253 2206200 773600 651630 768380 1116700 1050100 973080 1533900 884150 1410100 112820 2178100 744010 770170 788390 1107600 1073200 956280 1464800 2 2 2 2 2 2 2 2 2 2 2 197320000 87867000 109450000 13764 913 12670 72334;72335;72336 87324;87325;87326 87324 3 MNLASSFVNGFVNAAFGQDK Oxidation (M) 2131.9997 0.99968901 1609 Q13200;Q13200-3;Q13200-2 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 1 0 By MS/MS By matching 4 0 2 1 1 80.629 80.626 3 6.2094E-09 26947 20211116_3431_TMUAki_TMT10x_P_F4 103.27 84.437 4507400 7324900 206040 6803800 3512600 8547300 5040900 5073900 5198700 4952000 5633200 4198300 6833000 551780 7003800 3418900 8521800 5038100 5330400 5297300 4841400 5420700 1 1 1 1 1 1 1 1 1 1 1 4507400 7324900 206040 6803800 3512600 8547300 5040900 5073900 5198700 4952000 5633200 4198300 6833000 551780 7003800 3418900 8521800 5038100 5330400 5297300 4841400 5420700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1803700000 736970000 1066700000 13765 1609 12671 72337;72338 87327 87327 2159 1 MNLASSFVNGFVNAAFGQDK Unmodified 2116.0048 0.004774387 1609 Q13200;Q13200-3;Q13200-2 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.816 1 1 1 1 2 81.753 81.761 3 5.0006E-14 26528 20211116_3444_TMUAki_TMT10x_S_F5 139.98 122.91 4594300 7168300 94590 7094700 5348200 5254800 5364600 3107400 2945400 3700100 4823100 4278400 6688500 470470 7215400 5133700 5418500 5365800 3285500 3168900 3589300 4594500 3 3 2 3 3 3 3 3 3 3 3 1289000 1564900 0 1768700 1061200 1750600 990950 891550 889220 943450 1212400 1200100 1461000 94534 1789700 1015200 1765200 1005700 951380 920550 919290 1159600 1 1 0 1 1 1 1 1 1 1 1 3305300 5603400 94590 5325900 4287000 3504200 4373700 2215900 2056200 2756700 3610700 3078300 5227500 375940 5425700 4118500 3653300 4360100 2334200 2248400 2670000 3434900 2 2 2 2 2 2 2 2 2 2 2 751990000 416510000 335480000 13766 1609 12671 72339;72340;72341 87328;87329;87330;87331 87329 4 MNLGVGAYRDDNGKPYVLPSVR Oxidation (M) 2436.222 0.22197781 471 P00505;P00505-2 GOT2 Aspartate aminotransferase, mitochondrial yes no 0 0 1 2 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 50.633 50.461 4 3.0572E-08 16256 20211116_3439_TMUAki_TMT10x_S_F1 100.58 81.796 20723000 35197000 187000 42972000 31289000 36567000 23498000 29818000 26954000 25241000 29704000 19295000 32871000 1898500 43194000 29807000 37496000 24349000 30521000 27368000 24841000 28570000 7 7 4 7 7 7 7 7 7 7 7 13155000 20957000 165540 26694000 21510000 30805000 17799000 17879000 16632000 15273000 17764000 12249000 19576000 1292800 26889000 20537000 30838000 18212000 18753000 17011000 15024000 17101000 4 4 3 4 4 4 4 4 4 4 4 7568100 14240000 21460 16278000 9778200 5761900 5699200 11939000 10323000 9968600 11940000 7046200 13295000 605740 16305000 9269800 6657300 6137300 11768000 10356000 9817100 11468000 3 3 1 3 3 3 3 3 3 3 3 3229300000 2050100000 1179200000 13767 471 12672 72342;72343;72344;72345 87332;87333;87334;87335;87336;87337;87338 87336 363 7 MNLGVGAYRDDNGKPYVLPSVR Unmodified 2420.2271 0.22706318 471 P00505;P00505-2 GOT2 Aspartate aminotransferase, mitochondrial yes no 0 0 0 2 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 56.854 56.567 4 4.4752E-08 18775 20211116_3430_TMUAki_TMT10x_P_F3 100.76 86.719 17755000 28025000 213650 38587000 24359000 19779000 18282000 13316000 10131000 12187000 19790000 16533000 26189000 1763600 38338000 23217000 21164000 18609000 13831000 11006000 11949000 18792000 2 2 2 2 2 2 2 2 2 2 2 9867900 14834000 212560 20979000 15184000 15544000 12062000 7237200 4992200 6234200 10387000 9189600 13865000 1090700 20887000 14494000 15984000 12179000 7747400 5579500 6130000 9852800 1 1 1 1 1 1 1 1 1 1 1 7887300 13191000 1090.1 17608000 9174700 4234700 6220000 6079000 5139200 5952600 9403100 7343800 12325000 672960 17451000 8723000 5180400 6430200 6083900 5426800 5818800 8938900 1 1 1 1 1 1 1 1 1 1 1 2872200000 1883800000 988350000 13768 471 12672 72346;72347;72348 87339;87340 87339 2 MNLPGEVTFLPLNK Oxidation (M) 1587.8331 0.8330646 3219 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 1 0 By MS/MS By MS/MS 7.67 0.471 2 4 3 3 72.491 72.596 2;3 2.8281E-13 22858 20211116_3447_TMUAki_TMT10x_S_F8 127.78 105.24 18842000 32799000 299090 28340000 21676000 36825000 24293000 28883000 27218000 26415000 26989000 17546000 30588000 1825500 29353000 20865000 36813000 24596000 29694000 27553000 25900000 26042000 6 6 5 6 6 6 6 6 6 6 6 13907000 23843000 252490 20388000 15009000 30953000 18183000 22003000 20560000 19405000 19834000 12950000 22235000 1348700 21201000 14483000 30680000 18352000 22745000 20786000 19059000 19156000 4 4 3 4 4 4 4 4 4 4 4 4934800 8956000 46600 7951800 6667200 5871300 6110100 6880600 6658300 7009400 7154700 4595100 8353200 476820 8152000 6381700 6132300 6243800 6948700 6767300 6840500 6886500 2 2 2 2 2 2 2 2 2 2 2 3440300000 1844800000 1595500000 13769 3219 12673 72349;72350;72351;72352;72353;72354 87341;87342;87343;87344;87345;87346;87347;87348 87348 3207 8 MNLPGEVTFLPLNK Unmodified 1571.8381 0.83814998 3219 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 0 By MS/MS 2 0 1 1 78.138 78.107 2 0.0032822 25707 20211116_3440_TMUAki_TMT10x_S_F2 67.93 41.416 3746000 7269500 151670 6605800 5333800 5000800 5142900 4043300 3646200 4189700 5056500 3489100 6780700 474160 6761800 5118700 5171900 5180300 4163700 3824900 4085800 4834200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3746000 7269500 151670 6605800 5333800 5000800 5142900 4043300 3646200 4189700 5056500 3489100 6780700 474160 6761800 5118700 5171900 5180300 4163700 3824900 4085800 4834200 1 1 1 1 1 1 1 1 1 1 1 397480000 0 397480000 13770 3219 12673 72355 87349 87349 1 MNLSEEVDLEDYVARPDK Oxidation (M) 2137.9838 0.98376417 1032 P43686;P43686-2 PSMC4 26S protease regulatory subunit 6B yes no 0 0 1 1 By MS/MS 3 0 1 1 61.348 61.081 3 7.3543E-07 20595 20211116_3430_TMUAki_TMT10x_P_F3 101.17 97.881 3491200 5700200 111680 5688500 4368200 7640600 4866400 4107700 4465300 4318000 4584900 3251500 5318800 405810 5833300 4207700 7583900 4897700 4361000 4564400 4208500 4419200 1 1 1 1 1 1 1 1 1 1 1 3491200 5700200 111680 5688500 4368200 7640600 4866400 4107700 4465300 4318000 4584900 3251500 5318800 405810 5833300 4207700 7583900 4897700 4361000 4564400 4208500 4419200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 492770000 492770000 0 13771 1032 12674 72356 87350 87350 1334 1 MNPAAEAEFNILLATDSYK Acetyl (Protein N-term);Oxidation (M) 2155.0143 0.01433602 1031 P43490 NAMPT Nicotinamide phosphoribosyltransferase yes yes 1 0 1 0 By MS/MS By MS/MS 2 0.953 4 4 2 1 5 6 81.852 81.841 2;3 4.4949E-32 27040 20211116_3428_TMUAki_TMT10x_P_F1 121.28 95.237 13032000 21835000 39671 20115000 14959000 21138000 16907000 14738000 14950000 16269000 17347000 12133000 20368000 937480 20658000 14381000 21327000 16987000 15354000 15380000 15826000 16660000 9 9 2 9 9 9 9 9 9 9 9 5607000 9246600 12484 8385200 5649600 12091000 6527100 6849000 7066600 7502000 7566900 5219900 8624900 369360 8670600 5433000 11971000 6591600 7247700 7183200 7299900 7284000 4 4 1 4 4 4 4 4 4 4 4 7425100 12589000 27187 11730000 9309000 9046800 10380000 7889100 7883700 8767100 9780100 6912900 11743000 568120 11987000 8948000 9355800 10396000 8105800 8196800 8526300 9375800 5 5 1 5 5 5 5 5 5 5 5 2814100000 2024100000 790010000 13772 1031 12675 72357;72358;72359;72360;72361;72362;72363;72364;72365;72366;72367 87351;87352;87353;87354;87355;87356;87357;87358;87359;87360 87352 1331 10 MNPAAEAEFNILLATDSYK Acetyl (Protein N-term) 2139.0194 0.019421398 1031 P43490 NAMPT Nicotinamide phosphoribosyltransferase yes yes 1 0 0 0 By MS/MS By MS/MS 2.83 0.898 3 1 2 3 3 83.277 83.273 2;3 4.2045E-41 27813 20211116_3440_TMUAki_TMT10x_S_F2 130.1 119.87 3322100 5279200 10628 5621300 4031500 4317200 4226300 2131500 1840100 2598400 3850500 3093100 4927300 277050 5691000 3870000 4429400 4202800 2291400 2047700 2518500 3652200 6 6 2 6 6 6 6 6 6 6 6 2177400 3387700 3041.1 3660200 2380400 3212100 2684300 1367500 1173100 1694900 2450100 2027300 3162100 172760 3708100 2289300 3258500 2660100 1493300 1304900 1641900 2324000 3 3 1 3 3 3 3 3 3 3 3 1144600 1891500 7586.5 1961100 1651200 1105000 1542000 763980 666930 903490 1400400 1065800 1765200 104290 1982900 1580600 1170900 1542700 798150 742800 876650 1328200 3 3 1 3 3 3 3 3 3 3 3 354570000 249210000 105360000 13773 1031 12675 72368;72369;72370;72371;72372;72373 87361;87362;87363;87364;87365;87366 87364 6 MNPEYDYLFK Acetyl (Protein N-term);Oxidation (M) 1376.5959 0.59585402 2781 Q9H0U4 RAB1B Ras-related protein Rab-1B yes yes 1 0 1 0 By MS/MS By MS/MS 2.71 1.03 1 2 2 2 3 4 76.671 76.602 2 0.00016587 27888 20211116_3441_TMUAki_TMT10x_S_F3 111.04 90.281 42422000 70364000 526670 67410000 50392000 62803000 49762000 43277000 40021000 45581000 52269000 39503000 65646000 4097000 68909000 48333000 63825000 50207000 45056000 41576000 44422000 50043000 7 7 5 7 7 7 7 7 7 7 7 20154000 32239000 54184 30983000 17250000 34722000 22207000 20027000 18858000 20532000 24270000 18765000 30078000 1659100 31753000 16667000 34812000 22162000 21119000 19523000 20032000 23245000 3 3 2 3 3 3 3 3 3 3 3 22269000 38125000 472490 36427000 33142000 28081000 27555000 23250000 21164000 25049000 27999000 20738000 35568000 2437900 37157000 31666000 29013000 28045000 23937000 22053000 24390000 26798000 4 4 3 4 4 4 4 4 4 4 4 5054900000 2808400000 2246500000 13774 2781 12676 72374;72375;72376;72377;72378;72379;72380 87367;87368;87369;87370;87371;87372;87373;87374 87372 2947 8 MNPEYDYLFK Acetyl (Protein N-term) 1360.6009 0.6009394 2781 Q9H0U4 RAB1B Ras-related protein Rab-1B yes yes 1 0 0 0 By MS/MS 3 0 1 1 79.868 79.817 2 0.045479 29149 20211116_3441_TMUAki_TMT10x_S_F3 57.59 36.833 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13775 2781 12676 72381 87375 87375 1 MNQVEDEVFEEFCR Oxidation (M) 1846.7502 0.75019918 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 1 0 By MS/MS By MS/MS 1 0 3 1 2 69.361 69.276 2;3 1.4006E-32 23840 20211116_3439_TMUAki_TMT10x_S_F1 219.92 205.98 5055800 8513500 0 7173700 5709300 8916100 6045200 6588400 7011700 6782900 7386700 4706900 7939000 362260 7439000 5478500 8923400 6144200 6821900 7104200 6616500 7114100 2 2 0 2 2 2 2 2 2 2 2 3144200 5164100 0 4522900 2984500 6155600 3335200 3778000 4250200 3990100 4424800 2927300 4816300 223540 4683800 2868200 6116800 3393000 3967600 4290000 3888200 4263000 1 1 0 1 1 1 1 1 1 1 1 1911600 3349300 0 2650800 2724800 2760500 2710000 2810400 2761500 2792700 2961900 1779700 3122700 138720 2755200 2610300 2806600 2751200 2854300 2814200 2728300 2851100 1 1 0 1 1 1 1 1 1 1 1 1379900000 712920000 667030000 13776 1723 12677 72382;72383;72384 87376;87377;87378 87377 2315 3 MNQVEDEVFEEFCR Unmodified 1830.7553 0.75528456 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 77.81 77.784 2 4.3831E-06 27326 20211116_3439_TMUAki_TMT10x_S_F1 111.79 104.77 27772000 43816000 1893000 48402000 28500000 35608000 34800000 14841000 10217000 16443000 30420000 25872000 40903000 4076900 48862000 27601000 36598000 34209000 16185000 12187000 15993000 28720000 2 2 2 2 2 2 2 2 2 2 2 20541000 31428000 1391200 35332000 18179000 28137000 25243000 10810000 6811000 12045000 22296000 19136000 29340000 2966400 35661000 17693000 28718000 24665000 11903000 8285100 11713000 21028000 1 1 1 1 1 1 1 1 1 1 1 7230400 12389000 501840 13070000 10321000 7471700 9556800 4030400 3406000 4397700 8124500 6736000 11563000 1110400 13201000 9907800 7879600 9543400 4282500 3901600 4279900 7691300 1 1 1 1 1 1 1 1 1 1 1 1135200000 627420000 507800000 13777 1723 12677 72385;72386 87379;87380 87380 2 MNTEAEQQLLHHAR Acetyl (Protein N-term);Oxidation (M) 1734.8108 0.81076603 2718 Q9BXW6 OSBPL1A Oxysterol-binding protein-related protein 1 yes yes 1 0 1 0 By MS/MS By matching 1.33 0.471 2 1 2 1 33.787 33.717 3 1.0574E-06 7483 20211116_3428_TMUAki_TMT10x_P_F1 114.72 110.42 424060 706020 10840 795040 1243800 1054300 622530 536980 627240 452210 635880 394920 659130 56741 808660 1177600 1046400 664090 569540 638210 445140 613140 2 2 2 2 2 2 2 2 2 2 2 424060 706020 10840 795040 1243800 1054300 622530 536980 627240 452210 635880 394920 659130 56741 808660 1177600 1046400 664090 569540 638210 445140 613140 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 49894000 37677000 12216000 13778 2718 12678 72387;72388;72389 87381;87382 87381 2920 2 MNTNPSRGPYHFR Oxidation (M) 1591.7314 0.73139349 983 P40429 RPL13A 60S ribosomal protein L13a yes yes 0 0 1 1 By MS/MS 3.67 1.25 1 1 1 3 28.049 27.963 4 0.0023329 6765 20211116_3429_TMUAki_TMT10x_P_F2 67.952 55.806 160760 270410 8088.7 263220 254610 308470 174560 207240 211140 259490 241190 149740 252290 21795 269720 242580 309180 182380 217380 214260 251280 231740 2 2 1 2 2 2 2 2 2 2 2 160760 270410 8088.7 263220 254610 308470 174560 207240 211140 259490 241190 149740 252290 21795 269720 242580 309180 182380 217380 214260 251280 231740 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17511000 17511000 0 13779 983 12679 72390;72391;72392 87383;87384 87383 1266 2 MNVDHEVNLLVEEIHR Acetyl (Protein N-term);Oxidation (M) 2003.9735 0.97347426 3055 Q9P1F3 ABRACL Costars family protein ABRACL yes yes 1 0 1 0 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 66.853 66.688 2;3 2.4034E-29 20735 20211116_3428_TMUAki_TMT10x_P_F1 106.3 87.225 10511000 17686000 5749.4 16542000 11787000 13350000 11400000 12773000 12914000 12155000 13701000 9785700 16499000 635340 16908000 11285000 13784000 11631000 12998000 13099000 11897000 13192000 7 7 2 7 7 7 7 7 7 7 7 1577300 2258600 0 2428300 1294700 2486800 1391600 1275400 1423700 1325200 1494500 1468300 2108200 79953 2466200 1240800 2502600 1407400 1359400 1449400 1292200 1439500 1 1 0 1 1 1 1 1 1 1 1 8933600 15428000 5749.4 14113000 10492000 10864000 10008000 11498000 11490000 10830000 12206000 8317500 14391000 555390 14442000 10044000 11282000 10223000 11638000 11650000 10605000 11753000 6 6 2 6 6 6 6 6 6 6 6 8040300000 3568600000 4471700000 13780 3055 12680 72393;72394;72395;72396 87385;87386;87387;87388;87389;87390;87391 87385 3098 7 MNVDHEVNLLVEEIHR Acetyl (Protein N-term) 1987.9786 0.97855964 3055 Q9P1F3 ABRACL Costars family protein ABRACL yes yes 1 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 75.286 75.248 3 1.757E-15 24268 20211116_3428_TMUAki_TMT10x_P_F1 73.833 55.001 4999900 8422500 14037 7955100 5717900 6928700 5985400 5010700 4756000 5429700 5922600 4655400 7857400 287420 8133200 5489900 7078700 6019200 5203900 4933600 5285600 5677200 3 3 1 3 3 3 3 3 3 3 3 1685600 2662300 14037 2702100 1744000 3305100 1918700 1642000 1527400 1870500 1862200 1569600 2484300 153650 2762800 1677500 3292500 1925000 1760300 1582800 1817400 1786000 1 1 1 1 1 1 1 1 1 1 1 3314300 5760300 0 5253000 3973900 3623500 4066800 3368700 3228700 3559200 4060400 3085900 5373100 133770 5370400 3812400 3786200 4094300 3443600 3350800 3468300 3891200 2 2 0 2 2 2 2 2 2 2 2 1172200000 622440000 549760000 13781 3055 12680 72397;72398 87392;87393;87394 87392 3 MNVFDTELK Unmodified 1095.527 0.52704617 697 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 0 0 By MS/MS 5 0 1 1 62.9 62.968 2 0.0064324 18844 20211116_3444_TMUAki_TMT10x_S_F5 70.441 22.482 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13782 697 12681 72399 87395 87395 1 MNVLADALK Oxidation (M) 989.52157 0.52156686 1339 P62244 RPS15A 40S ribosomal protein S15a yes yes 0 0 1 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 53.668 53.831 2 0.025833 15416 20211116_3445_TMUAki_TMT10x_S_F6 62.463 37.54 16670000 30068000 145170 31953000 23619000 22469000 16055000 36484000 36452000 26951000 31626000 15522000 28064000 1602300 32322000 22465000 23790000 17312000 36102000 36020000 26715000 30658000 4 4 3 4 4 4 4 4 4 4 4 3603500 6489200 54117 6965500 10948000 11338000 6576500 7435600 6843200 5333400 6938200 3355600 6056900 452050 7137700 10391000 11193000 6907600 7694100 6953500 5295500 6690100 1 1 1 1 1 1 1 1 1 1 1 13066000 23579000 91051 24987000 12671000 11131000 9478000 29049000 29609000 21618000 24688000 12167000 22007000 1150200 25185000 12074000 12596000 10404000 28408000 29066000 21419000 23968000 3 3 2 3 3 3 3 3 3 3 3 1274800000 375890000 898960000 13783 1339 12682 72400;72401;72402;72403 87396;87397;87398 87398 1795 3 MNVLADALK Unmodified 973.52665 0.52665224 1339 P62244 RPS15A 40S ribosomal protein S15a yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 64.918 65.328 2 3.3261E-05 19871 20211116_3447_TMUAki_TMT10x_S_F8 127.4 86.674 32569000 58795000 0 57966000 64764000 65946000 44365000 37337000 29520000 32365000 47981000 30323000 54858000 2914000 59312000 61571000 66046000 45609000 39256000 31337000 31814000 45714000 4 4 0 4 4 4 4 4 4 4 4 22535000 40101000 0 38168000 52862000 57448000 35781000 25123000 20442000 22388000 32360000 20981000 37411000 2125000 39363000 50246000 56609000 36712000 27093000 21890000 21978000 30848000 3 3 0 3 3 3 3 3 3 3 3 10034000 18693000 0 19797000 11902000 8497600 8584500 12213000 9078400 9977200 15621000 9341900 17447000 788950 19950000 11325000 9437200 8896400 12163000 9446300 9836400 14866000 1 1 0 1 1 1 1 1 1 1 1 2405300000 1387700000 1017600000 13784 1339 12682 72404;72405;72406;72407 87399;87400;87401;87402;87403 87403 5 MNYMPGTASLIEDIDKK Acetyl (Protein N-term);2 Oxidation (M) 1998.9278 0.9278292 162 O15116 LSM1 U6 snRNA-associated Sm-like protein LSm1 yes yes 1 0 2 1 By MS/MS 3 0 1 1 69.576 69.306 3 0.0058312 23958 20211116_3430_TMUAki_TMT10x_P_F3 49.224 32.73 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13785 162 12683 72408 87404 87404 126;127 1 MNYSDAIVWLK Oxidation (M) 1354.6591 0.65912298 244 O43776 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 0 0 1 0 By MS/MS 8 0 1 1 71.171 71.234 2 0.0076684 22795 20211116_3436_TMUAki_TMT10x_P_F8 69.346 47.839 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13786 244 12684 72409 87405 87405 196 1 MPCQLHQVIVAR Oxidation (M) 1466.7486 0.74862346 707 P17655;P17655-2 CAPN2 Calpain-2 catalytic subunit yes no 0 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 34.144 34.138 3 2.8851E-08 9589 20211116_3439_TMUAki_TMT10x_S_F1 139.31 120.53 335650 539490 7629.4 595620 548530 518320 383270 426290 489360 432920 527230 312580 503610 37920 602510 522260 530730 400690 438270 494540 422540 507430 2 2 2 2 2 2 2 2 2 2 2 159110 254330 7582.8 278340 391120 348560 214510 199850 232830 196030 248330 148210 237400 23508 283300 371040 347420 227390 210580 236620 191610 239080 1 1 1 1 1 1 1 1 1 1 1 176540 285160 46.68 317290 157410 169760 168760 226440 256520 236890 278900 164370 266210 14412 319210 151220 183320 173310 227680 257920 230930 268350 1 1 1 1 1 1 1 1 1 1 1 38439000 21050000 17389000 13787 707 12685 72410;72411 87406;87407 87407 789 2 MPCQLHQVIVAR Unmodified 1450.7537 0.75370884 707 P17655;P17655-2 CAPN2 Calpain-2 catalytic subunit yes no 0 0 0 0 By MS/MS 2 0 1 1 41.937 41.975 3 4.3403E-12 10966 20211116_3440_TMUAki_TMT10x_S_F2 131.12 106.73 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13788 707 12685 72412 87408 87408 1 MPCTEDYLSLILNR Oxidation (M) 1739.8222 0.82224192 38 CON__P02769 yes yes 0 0 1 0 By MS/MS By MS/MS 6.44 0.685 1 3 5 5 4 78.027 78.063 2;3 1.368E-18 27023 20211116_3435_TMUAki_TMT10x_P_F7 168.69 152.71 + 13207000 20617000 0 16043000 15709000 21669000 16548000 32066000 31946000 29961000 20972000 12295000 19221000 936320 16774000 15071000 21962000 17218000 32015000 31437000 29348000 20570000 5 5 0 5 5 5 5 5 5 5 5 7667900 11750000 0 9413500 8405800 15856000 9934800 14916000 15563000 14539000 10778000 7138900 10955000 563600 9864700 8093000 15734000 10172000 15201000 15416000 14215000 10545000 3 3 0 3 3 3 3 3 3 3 3 5538900 8867200 0 6629400 7303200 5813200 6613300 17150000 16384000 15422000 10194000 5156400 8265700 372720 6908900 6978100 6227200 7046700 16813000 16020000 15133000 10025000 2 2 0 2 2 2 2 2 2 2 2 8158800000 3836400000 4322300000 13789 38 12686 72413;72414;72415;72416;72417;72418;72419;72420;72421 87409;87410;87411;87412;87413;87414;87415 87411 18 7 MPCTEDYLSLILNR Unmodified 1723.8273 0.82732729 38 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS 7.43 0.728 1 2 4 4 3 79.432 79.433 2;3 3.8775E-51 26171 20211116_3436_TMUAki_TMT10x_P_F8 289.96 260.8 + 21098000 30120000 276250 27116000 23269000 25773000 28450000 18847000 14799000 21174000 23338000 19645000 28094000 1889600 27855000 22449000 26183000 28164000 19582000 15956000 20584000 22249000 6 6 4 6 6 6 6 6 6 6 6 12232000 16445000 163700 15034000 12734000 18227000 18300000 11246000 8345700 13275000 13257000 11390000 15340000 1094300 15484000 12354000 18215000 17964000 11847000 9100200 12882000 12637000 3 3 2 3 3 3 3 3 3 3 3 8866000 13675000 112550 12082000 10535000 7545900 10149000 7601900 6453100 7898600 10081000 8255400 12755000 795290 12370000 10094000 7968300 10201000 7735200 6855400 7702000 9612800 3 3 2 3 3 3 3 3 3 3 3 5640800000 3610700000 2030100000 13790 38 12686 72422;72423;72424;72425;72426;72427;72428 87416;87417;87418;87419;87420;87421 87417 6 MPFPVNHGASSEDTLLK Oxidation (M) 1857.8931 0.89309867 588 P09936 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1 yes yes 0 0 1 0 By MS/MS By MS/MS 5.31 1.49 2 2 3 3 2 1 6 7 47.991 48.148 3;4 8.7786E-16 12999 20211116_3445_TMUAki_TMT10x_S_F6 153.56 136.07 61408000 105360000 478200 116200000 103280000 146770000 69478000 127110000 147900000 112460000 106090000 57176000 98354000 5530000 118240000 98166000 147200000 74669000 129790000 145550000 110440000 103640000 20 20 9 20 20 20 20 20 20 20 20 33599000 56196000 229200 61062000 76568000 118150000 49292000 69601000 81003000 59593000 55697000 31281000 52455000 3094800 62804000 72713000 115750000 52407000 72916000 80121000 58614000 54512000 10 10 3 10 10 10 10 10 10 10 10 27809000 49165000 249000 55138000 26707000 28626000 20186000 57511000 66896000 52870000 50393000 25894000 45899000 2435200 55431000 25453000 31447000 22262000 56877000 65425000 51827000 49123000 10 10 6 10 10 10 10 10 10 10 10 26930000000 17027000000 9902300000 13791 588 12687 72429;72430;72431;72432;72433;72434;72435;72436;72437;72438;72439;72440;72441 87422;87423;87424;87425;87426;87427;87428;87429;87430;87431;87432;87433;87434;87435;87436;87437;87438;87439;87440;87441 87436 563 20 MPFPVNHGASSEDTLLK Unmodified 1841.8982 0.89818405 588 P09936 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.08 1.32 2 2 3 3 2 6 6 53.621 53.818 2;3 4.2513E-40 16668 20211116_3445_TMUAki_TMT10x_S_F6 202.29 176.86 96039000 167490000 1548600 193160000 134320000 133190000 104640000 80048000 68724000 89531000 125040000 89432000 156380000 9796300 194340000 128130000 138190000 106580000 84353000 73484000 87050000 118880000 18 18 14 18 18 18 18 18 18 18 18 36618000 62707000 249380 70482000 67151000 79672000 51118000 26720000 23020000 32482000 43370000 34096000 58541000 3632200 71492000 63995000 79408000 51820000 30012000 25371000 31487000 41208000 6 6 5 6 6 6 6 6 6 6 6 59421000 104780000 1299200 122680000 67169000 53521000 53523000 53328000 45703000 57049000 81669000 55336000 97837000 6164000 122850000 64135000 58785000 54762000 54341000 48113000 55564000 77669000 12 12 9 12 12 12 12 12 12 12 12 25413000000 13227000000 12186000000 13792 588 12687 72442;72443;72444;72445;72446;72447;72448;72449;72450;72451;72452;72453 87442;87443;87444;87445;87446;87447;87448;87449;87450;87451;87452;87453;87454;87455;87456;87457;87458;87459;87460;87461 87455 20 MPGGPKPGGGPGLSTPGGHPKPPHR Oxidation (M) 2385.2124 0.21241617 777 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 1 2 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 29.912 29.815 5;6 6.3818E-08 8996 20211116_3441_TMUAki_TMT10x_S_F3 91.729 81.88 296270 431700 3243 572600 487470 630020 313120 358480 452950 360530 427900 275840 403350 26033 575050 462940 632180 331050 378240 453790 352030 413560 3 3 2 3 3 3 3 3 3 3 3 168690 219480 3243 323510 356700 472640 176070 224900 274520 224510 259820 157090 205190 19641 324910 337680 466730 191090 241160 274450 219290 251100 2 2 2 2 2 2 2 2 2 2 2 127570 212220 0 249100 130760 157380 137050 133580 178420 136020 168080 118750 198160 6392 250140 125260 165450 139960 137090 179340 132740 162460 1 1 0 1 1 1 1 1 1 1 1 47668000 39660000 8007700 13793 777 12688 72454;72455;72456 87462;87463;87464 87464 912 3 MPIIPFLL Oxidation (M) 958.55616 0.55616146 3027 Q9NZ01;Q9NZ01-2 TECR Very-long-chain enoyl-CoA reductase yes no 0 0 1 0 By MS/MS By MS/MS 4 2.83 2 1 2 1 83.394 83.393 2 0.011617 29114 20211116_3429_TMUAki_TMT10x_P_F2 87.758 77.772 809250 1273300 4088.9 1341100 970890 1327900 1014800 914130 895450 978440 1151900 753520 1188400 73167 1363100 932290 1344200 1023400 952220 925290 952940 1103300 3 3 3 3 3 3 3 3 3 3 3 363400 577050 3760 605810 400510 806050 462470 435540 459870 458720 523450 338390 538550 34152 618990 385810 800470 465780 462220 470210 447060 502980 2 2 2 2 2 2 2 2 2 2 2 445850 696280 328.91 735250 570380 521810 552330 478580 435580 519720 628480 415140 649850 39015 744130 546470 543780 557580 490000 455080 505890 600300 1 1 1 1 1 1 1 1 1 1 1 130580000 88109000 42467000 13794 3027 12689 72457;72458;72459 87465;87466 87465 3077 2 MPIPELDLSELEGLGLSDTATYK Oxidation (M) 2507.2353 0.23528741 1585 Q13015 MLLT11 Protein AF1q yes yes 0 0 1 0 By MS/MS By MS/MS 4.4 1.02 1 2 1 1 2 3 80.387 80.374 3 1.3342E-05 26851 20211116_3431_TMUAki_TMT10x_P_F4 78.057 64.074 31309000 49805000 0 49661000 36831000 30929000 43189000 14550000 15108000 17024000 31746000 29147000 46473000 2043900 50393000 35434000 32295000 42607000 15694000 17189000 16524000 30109000 6 6 0 6 6 6 6 6 6 6 6 14561000 22806000 0 23079000 14883000 16294000 19152000 6819600 7009600 8343200 14316000 13555000 21282000 862250 23424000 14355000 16805000 18827000 7457500 7921700 8085600 13584000 3 3 0 3 3 3 3 3 3 3 3 16748000 26998000 0 26582000 21948000 14634000 24037000 7730500 8098100 8680600 17429000 15592000 25191000 1181700 26969000 21079000 15490000 23779000 8236700 9267000 8438700 16524000 3 3 0 3 3 3 3 3 3 3 3 4877900000 1542500000 3335300000 13795 1585 12690 72460;72461;72462;72463;72464 87467;87468;87469;87470;87471;87472 87468 2146 6 MPIPELDLSELEGLGLSDTATYK Unmodified 2491.2404 0.24037279 1585 Q13015 MLLT11 Protein AF1q yes yes 0 0 0 0 By MS/MS By MS/MS 5.4 1.5 1 2 2 3 2 81.559 81.576 3 2.1611E-15 28907 20211116_3446_TMUAki_TMT10x_S_F7 126.02 110.08 3894500 6164000 7820.9 6020200 4001700 4454500 4333700 2650800 2398600 2918000 4336000 3625900 5751100 289950 6128400 3843100 4594000 4318600 2794200 2593600 2838900 4122800 3 3 1 3 3 3 3 3 3 3 3 1899000 2639300 0 2504100 1251100 2366100 1487100 1295200 1033400 1317400 1961800 1768000 2462200 124190 2562100 1204000 2394900 1482000 1371600 1104100 1285700 1863700 1 1 0 1 1 1 1 1 1 1 1 1995400 3524700 7820.9 3516100 2750500 2088400 2846600 1355600 1365100 1600700 2374200 1857900 3288900 165760 3566300 2639100 2199100 2836600 1422600 1489400 1553200 2259100 2 2 1 2 2 2 2 2 2 2 2 1465300000 440800000 1024500000 13796 1585 12690 72465;72466;72467;72468;72469 87473;87474;87475 87475 3 MPLDDLDREDEVR Oxidation (M) 1617.7305 0.73045002 1267 P57740;P57740-3;P57740-2 NUP107 Nuclear pore complex protein Nup107 yes no 0 0 1 1 By matching By MS/MS 1.33 0.471 2 1 1 2 40.652 40.622 3 0.001529 12300 20211116_3439_TMUAki_TMT10x_S_F1 74.475 56.373 354820 606200 0 673960 317200 291260 267090 608580 644270 517830 639270 330360 565910 26597 677040 302740 327460 285220 600030 638760 509480 616840 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 354820 606200 0 673960 317200 291260 267090 608580 644270 517830 639270 330360 565910 26597 677040 302740 327460 285220 600030 638760 509480 616840 1 1 0 1 1 1 1 1 1 1 1 104630000 40539000 64091000 13797 1267 12691 72470;72471;72472 87476 87476 1709 1 MPLDDLDREDEVR Unmodified 1601.7355 0.7355354 1267 P57740;P57740-3;P57740-2 NUP107 Nuclear pore complex protein Nup107 yes no 0 0 0 1 By MS/MS 2 0 1 1 48.562 48.457 3 0.026298 13649 20211116_3440_TMUAki_TMT10x_S_F2 54.09 40.344 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13798 1267 12691 72473 87477 87477 1 MPLIGLGTWK Unmodified 1114.6209 0.62088698 669 P14550 AKR1A1 Alcohol dehydrogenase [NADP(+)] yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 78.109 78.109 2 0.00054071 26195 20211116_3433_TMUAki_TMT10x_P_F5 105.1 0 5986800 9382200 0 8613900 7058000 10808000 8242600 4176500 3612300 5053500 6967400 5574200 8751700 499580 8874700 6796600 10727000 8155600 4607300 3996600 4899300 6617300 1 1 0 1 1 1 1 1 1 1 1 5986800 9382200 0 8613900 7058000 10808000 8242600 4176500 3612300 5053500 6967400 5574200 8751700 499580 8874700 6796600 10727000 8155600 4607300 3996600 4899300 6617300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 883450000 562770000 320670000 13799 669 12692 72474;72475;72476 87478;87479 87478 2 MPNVPNTQPAIMKPTEEHPAYTQIAK Oxidation (M) 2921.4415 0.44154899 165 O15126;O15126-2 SCAMP1 Secretory carrier-associated membrane protein 1 yes no 0 0 1 1 By matching By MS/MS 8 0 2 1 1 51.168 51.162 4 1.8804E-08 14094 20211116_3447_TMUAki_TMT10x_S_F8 92.833 87.929 630270 1203600 411.93 1261700 559110 514420 396350 658900 571000 621570 817290 586850 1123300 51641 1271900 532040 573400 415950 661510 581990 608600 780780 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 630270 1203600 411.93 1261700 559110 514420 396350 658900 571000 621570 817290 586850 1123300 51641 1271900 532040 573400 415950 661510 581990 608600 780780 1 1 1 1 1 1 1 1 1 1 1 702690000 398610000 304080000 13800 165 12693 72477;72478 87480 87480 128 1 MPSESAAQSLAVALPLQTK Unmodified 1941.0241 0.024112846 228 O43660;O43660-2 PLRG1 Pleiotropic regulator 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 1 1 1 1 74.124 74.145 3 5.1713E-24 24026 20211116_3436_TMUAki_TMT10x_P_F8 169.25 152.18 3079200 5486200 76905 5024100 3543500 5367200 3896900 2795800 2110800 2893700 3524200 2867600 5117500 333470 5163200 3411300 5388800 3879000 2975300 2275700 2822100 3355900 1 1 1 1 1 1 1 1 1 1 1 3079200 5486200 76905 5024100 3543500 5367200 3896900 2795800 2110800 2893700 3524200 2867600 5117500 333470 5163200 3411300 5388800 3879000 2975300 2275700 2822100 3355900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 892060000 892060000 0 13801 228 12694 72479;72480 87481;87482 87481 2 MPSESAAQSLAVALPLQTK Oxidation (M) 1957.019 0.019027468 228 O43660;O43660-2 PLRG1 Pleiotropic regulator 1 yes no 0 0 1 0 By MS/MS 7.5 0.5 1 1 2 67.081 67.456 3 7.0897E-09 23020 20211116_3446_TMUAki_TMT10x_S_F7 116.13 105.03 2464000 4292500 12851 3858300 3156300 2942100 2861000 3656000 3596900 3989400 3558600 2294300 4003800 225960 3953100 3019800 3069700 2940300 3691200 3625700 3882500 3434000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2464000 4292500 12851 3858300 3156300 2942100 2861000 3656000 3596900 3989400 3558600 2294300 4003800 225960 3953100 3019800 3069700 2940300 3691200 3625700 3882500 3434000 1 1 1 1 1 1 1 1 1 1 1 726700000 0 726700000 13802 228 12694 72481;72482 87483;87484 87483 180 2 MPSGEFAR Unmodified 893.40654 0.40653711 635 P12004 PCNA Proliferating cell nuclear antigen yes yes 0 0 0 0 By MS/MS By MS/MS 4.8 0.748 2 2 1 3 2 36.148 36.192 2 0.00074267 9228 20211116_3431_TMUAki_TMT10x_P_F4 134.81 74.012 8531000 12880000 14853 14697000 13294000 9187900 8502800 4704900 4677800 4338900 9322100 7942500 12025000 688510 14782000 12621000 9599100 8756800 4998900 5091000 4252700 8848900 12 12 3 12 12 12 12 12 12 12 12 5478200 8038300 6248.9 9116500 10392000 7152400 5536800 3078200 3059000 2745500 5918400 5100200 7504700 462390 9194800 9838200 7316000 5793300 3325300 3321900 2695100 5620800 3 3 1 3 3 3 3 3 3 3 3 3052800 4841700 8604 5580300 2902000 2035500 2966000 1626700 1618700 1593500 3403700 2842300 4520600 226130 5587700 2782600 2283100 2963500 1673600 1769100 1557600 3228200 9 9 2 9 9 9 9 9 9 9 9 496200000 367860000 128340000 13803 635 12695 72483;72484;72485;72486;72487 87485;87486;87487;87488;87489;87490;87491;87492;87493;87494;87495;87496 87485 12 MPSGEFAR Oxidation (M) 909.40145 0.40145173 635 P12004 PCNA Proliferating cell nuclear antigen yes yes 0 0 1 0 By MS/MS 5 0 1 1 30.154 30.272 2 0.086895 5917 20211116_3444_TMUAki_TMT10x_S_F5 56.721 32.047 93588 162510 0 168370 92404 53805 101380 42882 57473 41935 95268 87134 151660 7028.8 169640 88781 61634 101000 44122 61732 40995 90732 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 93588 162510 0 168370 92404 53805 101380 42882 57473 41935 95268 87134 151660 7028.8 169640 88781 61634 101000 44122 61732 40995 90732 1 1 0 1 1 1 1 1 1 1 1 10335000 0 10335000 13804 635 12695 72488 87497 87497 667 1 MPSHQGAEQQQQQHHVFISQVVTEK Oxidation (M) 2916.3937 0.39368759 401 O94979;O94979-9;O94979-6;O94979-3;O94979-10;O94979-4;O94979-2;O94979-8;O94979-7;O94979-5 SEC31A Protein transport protein Sec31A yes no 0 0 1 0 By MS/MS 5 0 1 1 33.871 33.816 5 4.996E-17 8241 20211116_3433_TMUAki_TMT10x_P_F5 129.93 115.32 391910 572860 0 699490 1042000 1058200 525620 644810 692410 496830 607960 364860 535010 35758 710020 985770 1046600 565320 672030 694110 491330 589090 1 1 0 1 1 1 1 1 1 1 1 391910 572860 0 699490 1042000 1058200 525620 644810 692410 496830 607960 364860 535010 35758 710020 985770 1046600 565320 672030 694110 491330 589090 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 95754000 95754000 0 13805 401 12696 72489 87498 87498 304 1 MQAHELFR Acetyl (Protein N-term);Oxidation (M) 1088.5073 0.50731378 905 P33121;P33121-2;P33121-3 ACSL1 Long-chain-fatty-acid--CoA ligase 1 yes no 1 0 1 0 By MS/MS By matching 2.67 0.471 1 2 2 1 33.831 33.67 2 0.036377 9520 20211116_3430_TMUAki_TMT10x_P_F3 52.716 35.33 1071300 1712100 3517.9 1530400 2166900 1899800 1240000 983560 1233100 974220 1349100 997400 1596900 96635 1579600 2053900 1892100 1306100 1046000 1258900 951860 1297900 3 3 2 3 3 3 3 3 3 3 3 1071300 1712100 3517.9 1530400 2166900 1899800 1240000 983560 1233100 974220 1349100 997400 1596900 96635 1579600 2053900 1892100 1306100 1046000 1258900 951860 1297900 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33229000 23331000 9898000 13806 905 12697 72490;72491;72492 87499;87500;87501 87500 1113 3 MQAHIQDLEEQLDEEEGAR Oxidation (M) 2255.9965 0.99645412 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 1 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 50.742 50.601 3 2.3668E-32 16292 20211116_3439_TMUAki_TMT10x_S_F1 197.09 183.47 5166300 7756800 0 8906300 5725100 9242600 5522000 6011800 6877000 5316100 6136400 4810100 7242200 197300 9009800 5482400 9322400 5653800 6254600 6910600 5220700 5942500 4 4 0 4 4 4 4 4 4 4 4 3592000 4732400 0 5368000 4171200 7631700 4053500 3440600 4068600 3107400 3774900 3344500 4418200 93666 5465200 3996300 7540900 4118300 3699700 4128000 3048500 3650600 2 2 0 2 2 2 2 2 2 2 2 1574300 3024400 0 3538400 1554000 1610800 1468500 2571300 2808400 2208800 2361600 1465600 2824000 103630 3544600 1486100 1781500 1535500 2555000 2782500 2172100 2291900 2 2 0 2 2 2 2 2 2 2 2 4091500000 2617100000 1474300000 13807 935 12698 72493;72494;72495 87502;87503;87504;87505 87504 1191 4 MQAHIQDLEEQLDEEEGAR Unmodified 2240.0015 0.0015395026 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 60.004 59.857 3 1.4278E-31 18032 20211116_3428_TMUAki_TMT10x_P_F1 186.05 173.56 10637000 17511000 236660 18941000 11949000 17134000 11960000 10523000 10730000 12243000 13572000 9905700 16345000 1120800 19195000 11472000 17417000 12093000 11084000 11070000 11886000 13004000 3 3 3 3 3 3 3 3 3 3 3 5865300 9558800 143500 10331000 7971300 12713000 7984800 5976100 5894500 7005900 7172800 5462200 8922300 649500 10521000 7652300 12652000 8033900 6446900 6133500 6799900 6879700 2 2 2 2 2 2 2 2 2 2 2 4771600 7952000 93168 8609500 3977500 4421000 3975200 4546900 4835100 5236800 6399300 4443500 7422500 471300 8674000 3819400 4765000 4058900 4637300 4936700 5086100 6124700 1 1 1 1 1 1 1 1 1 1 1 1799600000 1259400000 540230000 13808 935 12698 72496;72497 87506;87507;87508 87507 3 MQAHIQDLEEQLDEEEGARQK Oxidation (M) 2512.15 0.14999465 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 1 1 By MS/MS By MS/MS 2.25 0.829 1 1 2 1 3 47.796 47.622 4 1.6091E-26 16138 20211116_3441_TMUAki_TMT10x_S_F3 172.83 147.63 2335900 4458400 47750 4583700 3057700 3377600 2137100 5539600 5093800 4327500 4035700 2175300 4160600 240020 4649200 2911100 3563900 2307500 5486900 5015200 4276400 3925800 4 4 2 4 4 4 4 4 4 4 4 444150 970490 0 983750 1019200 1593900 690700 1227300 981720 936400 779310 413510 905620 40563 1011800 968740 1577900 726790 1257600 978810 926520 758040 1 1 0 1 1 1 1 1 1 1 1 1891800 3487900 47750 3599900 2038500 1783800 1446400 4312300 4112100 3391100 3256400 1761700 3255000 199450 3637500 1942400 1986000 1580700 4229300 4036300 3349900 3167800 3 3 2 3 3 3 3 3 3 3 3 733860000 162320000 571540000 13809 935 12699 72498;72499;72500;72501 87509;87510;87511;87512 87512 1191 4 MQAHIQDLEEQLDEEEGARQK Unmodified 2496.1551 0.15508003 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 1 By MS/MS 1 0 1 1 56.003 55.703 4 8.1061E-14 18428 20211116_3439_TMUAki_TMT10x_S_F1 130.11 117.68 2395800 3726100 11555 4053300 2480200 1780700 1737000 2478200 2419700 2248800 2689200 2230800 3478000 210580 4077900 2360200 1969900 1822000 2477600 2441300 2205700 2585800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2395800 3726100 11555 4053300 2480200 1780700 1737000 2478200 2419700 2248800 2689200 2230800 3478000 210580 4077900 2360200 1969900 1822000 2477600 2441300 2205700 2585800 1 1 1 1 1 1 1 1 1 1 1 180620000 0 180620000 13810 935 12699 72502 87513 87513 1 MQAQMQMQMQGGDGDGGALGHHV 4 Oxidation (M) 2446.9722 0.97224676 1752 Q15019;Q15019-2;Q15019-3 SEPT2 Septin-2 yes no 0 0 4 0 By MS/MS By MS/MS 2 0.707 1 2 1 3 1 28.677 28.492 3;4 3.9548E-05 6970 20211116_3429_TMUAki_TMT10x_P_F2 69.763 66.426 134700 214680 266.34 224260 169540 262730 142800 117900 140470 134480 144360 125410 200360 8780.8 228680 161800 262020 146170 127680 143150 130650 139140 4 4 1 4 4 4 4 4 4 4 4 126720 196420 266.34 203710 161340 255520 136770 103070 113410 124770 132520 117980 183310 8780.8 208070 153990 253690 139290 113140 117070 120960 127240 3 3 1 3 3 3 3 3 3 3 3 7983.3 18262 0 20550 8208 7205.5 6028.4 14828 27068 9704 11845 7433.2 17049 0 20603 7815.4 8334.9 6880.1 14538 26076 9688.6 11898 1 1 0 1 1 1 1 1 1 1 1 60507000 42388000 18119000 13811 1752 12700 72503;72504;72505;72506 87514;87515;87516;87517 87515 2359;2360;2361;2362 4 MQAQMQMQMQGGDGDGGALGHHV 2 Oxidation (M) 2414.9824 0.98241751 1752 Q15019;Q15019-2;Q15019-3 SEPT2 Septin-2 yes no 0 0 2 0 By MS/MS By MS/MS 3.5 0.957 1 2 2 1 3 3 34.539 34.439 3 7.7228E-06 8269 20211116_3431_TMUAki_TMT10x_P_F4 78.794 75.604 516640 743900 13659 1253400 1822800 977650 806220 547960 759310 378200 872450 481120 696040 70280 1238600 1722800 1003300 869480 573730 778530 376370 838120 3 3 2 3 3 3 3 3 3 3 3 355330 457380 4548.9 841840 1637100 840380 635820 353930 502890 224190 558690 330850 428220 48074 831640 1544600 845280 693180 380520 519400 224300 537220 2 2 1 2 2 2 2 2 2 2 2 161320 286530 9110.3 411550 185680 137280 170400 194030 256420 154020 313750 150270 267830 22206 406920 178210 158040 176310 193210 259130 152070 300890 1 1 1 1 1 1 1 1 1 1 1 262620000 173240000 89381000 13812 1752 12700 72507;72508;72509;72510;72511;72512 87518;87519;87520;87521 87520 2359;2360;2361;2362 4 MQAQMQMQMQGGDGDGGALGHHV 3 Oxidation (M) 2430.9773 0.97733214 1752 Q15019;Q15019-2;Q15019-3 SEPT2 Septin-2 yes no 0 0 3 0 By MS/MS By MS/MS 4 0.816 1 1 1 1 2 31.577 31.551 3 1.4853E-05 6036 20211116_3444_TMUAki_TMT10x_S_F5 77.39 75.997 75377 122470 2423.5 137520 132950 110960 101510 56164 58780 50633 81742 70200 114340 8856.9 138830 126820 113450 103290 59485 62197 49679 78142 3 4 1 4 4 4 4 2 3 2 4 49918 79149 2423.5 89171 111090 95423 76340 40118 33582 32251 50908 46497 73892 7254 90355 105800 95582 77929 43345 36650 31822 48573 1 1 1 1 1 1 1 1 1 1 1 25459 43323 0 48351 21852 15538 25173 16046 25197 18383 30833 23703 40443 1602.9 48480 21021 17864 25361 16140 25546 17857 29569 2 3 0 3 3 3 3 1 2 1 3 100220000 75237000 24985000 13813 1752 12700 72513;72514;72515 87522;87523;87524;87525 87525 2359;2360;2361;2362 4 MQAQMQMQMQGGDGDGGALGHHV Unmodified 2382.9926 0.99258827 1752 Q15019;Q15019-2;Q15019-3 SEPT2 Septin-2 yes no 0 0 0 0 By MS/MS 4 0 1 1 46.139 46.331 3 4.9739E-05 13269 20211116_3442_TMUAki_TMT10x_S_F4 65.25 61.645 495020 863340 8466.5 1119600 427110 326730 362770 659670 608790 535540 775650 460980 806540 47980 1112200 408420 389230 378950 650190 614500 528150 743080 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 495020 863340 8466.5 1119600 427110 326730 362770 659670 608790 535540 775650 460980 806540 47980 1112200 408420 389230 378950 650190 614500 528150 743080 1 1 1 1 1 1 1 1 1 1 1 149600000 0 149600000 13814 1752 12700 72516 87526 87526 1 MQAQWEREER Oxidation (M) 1377.6095 0.60954702 1804 Q15424;Q15424-3;Q15424-2;Q15424-4 SAFB Scaffold attachment factor B1 yes no 0 0 1 1 By MS/MS 2 0 1 1 27.922 27.685 3 0.066417 6626 20211116_3429_TMUAki_TMT10x_P_F2 43.419 33.763 102160 170660 0 162080 246970 195610 145050 66782 80799 76081 164350 95109 159210 9464.1 166460 234180 194310 150470 74679 87976 73922 155960 1 1 0 1 1 1 1 1 1 1 1 102160 170660 0 162080 246970 195610 145050 66782 80799 76081 164350 95109 159210 9464.1 166460 234180 194310 150470 74679 87976 73922 155960 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3592900 3592900 0 13815 1804 12701 72517 87527 87527 2428 1 MQASIEK Unmodified 805.40039 0.4003891 524 P06748;P06748-3;P06748-2 NPM1 Nucleophosmin yes no 0 0 0 0 By MS/MS By MS/MS 4.8 0.748 2 2 1 3 2 36.224 36.262 2 0.0038772 8194 20211116_3444_TMUAki_TMT10x_S_F5 116.25 57.673 3373200 5408700 11114 5331500 4595300 4083400 4152700 1947100 1954600 2258600 3736400 3140800 5046600 306050 5425800 4395700 4188900 4167300 2096800 2147900 2193100 3549300 3 3 2 3 3 3 3 3 3 3 3 1689400 2691100 3523.5 2744500 2744700 2892700 2167300 1241300 1272200 1295500 1984600 1573000 2511300 157050 2798300 2617300 2900600 2200900 1347000 1358700 1263000 1892400 2 2 1 2 2 2 2 2 2 2 2 1683700 2717600 7590.4 2587000 1850700 1190800 1985300 705840 682440 963150 1751800 1567800 2535400 149010 2627500 1778300 1288300 1966400 749820 789230 930060 1656800 1 1 1 1 1 1 1 1 1 1 1 129400000 55445000 73952000 13816 524 12702 72518;72519;72520;72521;72522 87528;87529;87530;87531;87532 87532 5 MQASIEK Oxidation (M) 821.3953 0.39530372 524 P06748;P06748-3;P06748-2 NPM1 Nucleophosmin yes no 0 0 1 0 By MS/MS By MS/MS 4.33 0.943 1 2 1 2 31.271 31.213 2 0.032534 5993 20211116_3444_TMUAki_TMT10x_S_F5 85.38 47.247 935550 1474600 1237 1224700 1147800 1107000 1084300 698790 701540 627510 1098500 871060 1375000 76501 1265200 1098700 1125800 1091300 728950 744530 615800 1047400 3 3 1 3 3 3 3 3 3 3 3 292600 437020 1237 370290 436080 482550 338360 210230 216350 174460 360860 272450 407540 27421 384150 415760 478540 344550 226420 230570 171860 343640 1 1 1 1 1 1 1 1 1 1 1 642950 1037500 0 854370 711730 624430 745900 488560 485190 453050 737660 598610 967450 49080 881090 682960 647260 746740 502520 513960 443930 703780 2 2 0 2 2 2 2 2 2 2 2 80875000 24046000 56828000 13817 524 12702 72523;72524;72525 87533;87534;87535 87535 443 3 MQDAENVAVPEAAEER Acetyl (Protein N-term);Oxidation (M) 1815.7945 0.79450684 1249 P55884;P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 1 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 44.087 43.982 2 1.0436E-52 11595 20211116_3428_TMUAki_TMT10x_P_F1 206.36 195.84 338540 633650 9166.7 801110 577270 676740 378370 725060 692830 539060 631650 315290 591890 39954 803570 549060 698180 403940 729180 688900 534140 611230 2 2 2 2 2 2 2 2 2 2 2 148280 264460 3456.2 323900 419770 519140 252070 338730 307230 258930 261300 138090 246990 19317 329150 398490 512770 266160 351120 308510 256170 253490 1 1 1 1 1 1 1 1 1 1 1 190260 369190 5710.5 477210 157490 157600 126300 386320 385600 280130 370350 177190 344890 20637 474420 150580 185410 137770 378070 380390 277960 357730 1 1 1 1 1 1 1 1 1 1 1 189920000 143110000 46814000 13818 1249 12703 72526;72527 87536;87537 87536 1695 2 MQDIPEETESRDGEAVASES Oxidation (M) 2194.9172 0.91720075 2382 Q92974;Q92974-2;Q92974-3 ARHGEF2 Rho guanine nucleotide exchange factor 2 yes no 0 0 1 1 By MS/MS By MS/MS 1 0 2 1 1 37.72 37.677 3 0.0014544 9039 20211116_3428_TMUAki_TMT10x_P_F1 61.537 52.283 164220 262180 4598.9 402110 482030 494270 254720 629900 925660 381180 454320 152910 245160 19295 401710 456560 500900 291030 626150 895620 382530 452860 2 2 1 2 2 2 2 2 2 2 2 71665 117910 4598.9 184030 428140 447530 196540 276610 406060 169910 207400 66761 110270 15220 187010 404980 435820 217950 286670 396880 170340 206220 1 1 1 1 1 1 1 1 1 1 1 92552 144270 0 218090 53893 46747 58184 353280 519610 211270 246920 86151 134890 4074.8 214710 51584 65080 73079 339470 498740 212190 246630 1 1 0 1 1 1 1 1 1 1 1 114580000 78222000 36355000 13819 2382 12704 72528;72529 87538;87539 87538 2720 2 MQDTSVSFGYQLDLPK Oxidation (M) 1843.8662 0.86621522 457 O96008;O96008-2 TOMM40 Mitochondrial import receptor subunit TOM40 homolog yes no 0 0 1 0 By MS/MS By matching 5.67 0.471 1 2 2 1 69.053 69.042 3 0.012236 22467 20211116_3433_TMUAki_TMT10x_P_F5 47.568 29.867 8879800 14159000 267240 12451000 8480500 15039000 9677000 7119400 7507700 7841600 9659900 8270000 13206000 979660 12861000 8177700 14983000 9686100 7659800 7809100 7628700 9251900 1 1 1 1 1 1 1 1 1 1 1 8879800 14159000 267240 12451000 8480500 15039000 9677000 7119400 7507700 7841600 9659900 8270000 13206000 979660 12861000 8177700 14983000 9686100 7659800 7809100 7628700 9251900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1556400000 949690000 606690000 13820 457 12705 72530;72531;72532 87540 87540 336 1 MQEHSDQVPVGNIPR Oxidation (M) 1721.8155 0.81551705 913 P33993;P33993-3;P33993-2 MCM7 DNA replication licensing factor MCM7 yes no 0 0 1 0 By MS/MS By MS/MS 3 1.41 1 1 1 1 1 3 2 32.593 32.538 3 7.0456E-07 9981 20211116_3441_TMUAki_TMT10x_S_F3 112.68 106.1 1224600 2039300 20907 2294400 2411900 2195200 1381000 1599500 1789800 1355800 1870700 1140400 1903900 136240 2321100 2287900 2229100 1467300 1649100 1805800 1334200 1802100 7 7 5 7 7 7 7 7 7 7 7 635930 1064100 7387.8 1158600 1893800 1572400 865650 851220 956830 684160 953360 592160 993300 76642 1181500 1790400 1560100 934650 896850 969300 675070 919780 3 3 2 3 3 3 3 3 3 3 3 588650 975210 13519 1135700 518070 622830 515330 748330 832970 671650 917380 548190 910570 59597 1139600 497440 668960 532700 752220 836500 659130 882350 4 4 3 4 4 4 4 4 4 4 4 261450000 174570000 86879000 13821 913 12706 72533;72534;72535;72536;72537 87541;87542;87543;87544;87545;87546;87547 87544 1139 7 MQEHSDQVPVGNIPR Unmodified 1705.8206 0.82060243 913 P33993;P33993-3;P33993-2 MCM7 DNA replication licensing factor MCM7 yes no 0 0 0 0 By MS/MS 4 0 1 1 36.153 36.181 3 0.0080541 8853 20211116_3431_TMUAki_TMT10x_P_F4 55.344 42.848 3954300 5470700 0 6885500 8623200 6422300 3768400 2617500 3232900 2365900 4473100 3681800 5110000 386150 6917500 8145800 6485700 4059700 2845800 3356400 2321000 4276600 1 1 0 1 1 1 1 1 1 1 1 3954300 5470700 0 6885500 8623200 6422300 3768400 2617500 3232900 2365900 4473100 3681800 5110000 386150 6917500 8145800 6485700 4059700 2845800 3356400 2321000 4276600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 470130000 470130000 0 13822 913 12706 72538 87548 87548 1 MQGQEAVLAMSSR 2 Oxidation (M) 1438.6544 0.65444831 1798 Q15393 SF3B3 Splicing factor 3B subunit 3 yes yes 0 0 2 0 By MS/MS By MS/MS 4 0.816 1 1 1 1 2 31.919 32.082 2;3 1.7866E-08 7178 20211116_3431_TMUAki_TMT10x_P_F4 111.88 78.192 106340 199670 1289.7 261230 121490 84315 130560 76921 68336 78285 157140 99019 186540 10230 259500 116800 96641 130030 78622 75394 76401 148840 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 106340 199670 1289.7 261230 121490 84315 130560 76921 68336 78285 157140 99019 186540 10230 259500 116800 96641 130030 78622 75394 76401 148840 2 2 2 2 2 2 2 2 2 2 2 12269000 0 12269000 13823 1798 12707 72539;72540;72541 87549;87550;87551;87552 87549 2419;2420 4 MQGQEAVLAMSSR Oxidation (M) 1422.6595 0.65953368 1798 Q15393 SF3B3 Splicing factor 3B subunit 3 yes yes 0 0 1 0 By MS/MS By MS/MS 5.5 0.866 1 3 1 3 38.409 38.572 2;3 8.4444E-08 10241 20211116_3442_TMUAki_TMT10x_S_F4 110.64 77.516 103880 163030 0 217740 94840 66883 79319 78396 80556 73523 137190 96703 152330 5877 216010 90377 77699 81307 78981 83907 72007 130590 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 103880 163030 0 217740 94840 66883 79319 78396 80556 73523 137190 96703 152330 5877 216010 90377 77699 81307 78981 83907 72007 130590 1 1 0 1 1 1 1 1 1 1 1 6203800 0 6203800 13824 1798 12707 72542;72543;72544;72545 87553;87554;87555;87556 87554 2419;2420 4 MQGSLEAHVNGFR Oxidation (M) 1460.683 0.68304632 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 1 0 By MS/MS By MS/MS 5.62 0.857 1 2 4 1 6 2 33.704 33.764 3 2.7599E-19 8303 20211116_3433_TMUAki_TMT10x_P_F5 185.32 159.28 2205800 3574100 73529 4048100 5287700 5044200 2809600 2879400 3052500 2444600 3143100 2054300 3336800 278260 4111100 5012000 5028600 2987000 3023800 3098000 2405500 3029200 7 7 5 7 7 7 7 7 7 7 7 1898800 3114700 72268 3503700 5010900 4799200 2503500 2569800 2701700 2177200 2712500 1768500 2907800 264350 3566300 4745800 4759100 2676600 2713600 2740200 2142500 2616300 4 4 3 4 4 4 4 4 4 4 4 306950 459440 1260.8 544340 276750 245070 306180 309580 350840 267450 430570 285810 429020 13914 544840 266180 269570 310410 310240 357800 262950 412890 3 3 2 3 3 3 3 3 3 3 3 433210000 396880000 36330000 13825 3317 12708 72546;72547;72548;72549;72550;72551;72552;72553 87557;87558;87559;87560;87561;87562;87563;87564;87565;87566 87558 3279 10 MQGSLEAHVNGFR Unmodified 1444.6881 0.6881317 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 0 0 By MS/MS 6 0 1 1 39.911 39.928 3 7.1833E-06 9436 20211116_3434_TMUAki_TMT10x_P_F6 94.673 80.515 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13826 3317 12708 72554 87567 87567 1 MQHLIAR Oxidation (M) 883.46981 0.46980607 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 1 0 By MS/MS By MS/MS 2.58 1.98 7 1 3 1 6 6 25.16 25.167 2;3 0.0019669 6775 20211116_3439_TMUAki_TMT10x_S_F1 108.98 79.834 6424700 10449000 69240 10245000 11936000 12557000 8454400 6812500 6869700 6339800 8498500 5982500 9749200 661130 10501000 11361000 12521000 8708600 7202300 7115900 6211200 8147800 13 13 9 13 13 13 13 13 13 13 13 4699300 7819800 47413 7856800 10110000 10804000 6355700 5309200 5390500 4900300 6534900 4375800 7296800 498330 8056700 9601500 10701000 6613300 5663100 5566800 4802700 6268600 7 7 4 7 7 7 7 7 7 7 7 1725400 2629100 21827 2388300 1826400 1753800 2098600 1503300 1479200 1439500 1963500 1606700 2452400 162800 2444000 1759300 1820200 2095300 1539200 1549100 1408500 1879200 6 6 5 6 6 6 6 6 6 6 6 255040000 169020000 86012000 13827 670;671 12709 72555;72556;72557;72558;72559;72560;72561;72562;72563;72564;72565;72566 87568;87569;87570;87571;87572;87573;87574;87575;87576;87577 87575 739 10 MQHLIAR Unmodified 867.47489 0.47489144 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 By MS/MS By MS/MS 1.2 0.4 4 1 2 3 31.425 31.449 2;3 0.0024305 6537 20211116_3428_TMUAki_TMT10x_P_F1 103.02 69.467 1395400 2183600 4949.7 2403700 2965800 2873700 2099100 1249200 1357300 1355700 1964600 1299200 2038400 135320 2443700 2821800 2862100 2151600 1355300 1434900 1319700 1876400 2 2 1 2 2 2 2 2 2 2 2 1395400 2183600 4949.7 2403700 2965800 2873700 2099100 1249200 1357300 1355700 1964600 1299200 2038400 135320 2443700 2821800 2862100 2151600 1355300 1434900 1319700 1876400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 738700000 417310000 321380000 13828 670;671 12709 72567;72568;72569;72570;72571 87578;87579;87580 87578 3 MQHNLEQQIQAR Oxidation (M) 1510.7311 0.73105914 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 1 0 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 29.754 29.603 3 9.9311E-10 6190 20211116_3431_TMUAki_TMT10x_P_F4 157.03 133.65 165070 254060 5161.3 286780 459670 298660 209060 190250 227770 178640 255410 153740 237180 22622 290430 434760 301090 225740 198550 231880 174950 245530 2 2 2 2 2 2 2 2 2 2 2 124630 182340 3940.3 210400 410840 258510 159040 139660 171220 126950 175040 116080 170250 18014 213380 387840 257720 174870 147610 173790 124510 168740 1 1 1 1 1 1 1 1 1 1 1 40438 71714 1221 76378 48832 40154 50011 50588 56556 51690 80374 37661 66934 4608.1 77047 46926 43376 50870 50941 58095 50438 76796 1 1 1 1 1 1 1 1 1 1 1 42470000 36380000 6090400 13829 1663 12710 72572;72573;72574 87581;87582 87581 2230 2 MQHNVLVAEVTQQLK Unmodified 1736.9243 0.92433922 1657 Q13618;Q13618-3;Q13618-2 CUL3 Cullin-3 yes no 0 0 0 0 By MS/MS 8 0 1 1 59.288 59.28 3 4.8138E-05 17384 20211116_3447_TMUAki_TMT10x_S_F8 91.076 71.753 3266900 5361600 0 5109700 4266000 2920100 3891900 3973400 3370000 3576500 4101400 3041600 5002000 255750 5197700 4079100 3133500 3951100 3974900 3477200 3509400 3933800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3266900 5361600 0 5109700 4266000 2920100 3891900 3973400 3370000 3576500 4101400 3041600 5002000 255750 5197700 4079100 3133500 3951100 3974900 3477200 3509400 3933800 1 1 0 1 1 1 1 1 1 1 1 124900000 0 124900000 13830 1657 12711 72575 87583 87583 1 MQLKPMEINPEMLNK Unmodified 1814.9093 0.90928278 588 P09936 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 65.984 65.954 3 4.6831E-14 20546 20211116_3436_TMUAki_TMT10x_P_F8 142.45 126.69 57074000 81899000 730510 109930000 60473000 41011000 68732000 13213000 9976800 16323000 52669000 53146000 76526000 5332500 109140000 58228000 45406000 67468000 14930000 14236000 15814000 49486000 7 7 4 7 7 7 7 7 7 7 7 30814000 43508000 318120 55617000 40171000 28622000 44785000 7869300 5964600 9259400 27354000 28693000 40643000 2854500 55479000 38645000 30357000 43984000 9090000 8525700 8985900 25725000 4 4 1 4 4 4 4 4 4 4 4 26259000 38391000 412390 54317000 20302000 12389000 23948000 5343400 4012200 7063400 25315000 24453000 35883000 2478000 53660000 19583000 15049000 23483000 5839800 5710000 6827600 23761000 3 3 3 3 3 3 3 3 3 3 3 3487100000 2029200000 1457900000 13831 588 12712 72576;72577;72578;72579 87584;87585;87586;87587;87588;87589;87590 87585 7 MQLKPMEINPEMLNK 3 Oxidation (M) 1862.894 0.89402665 588 P09936 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1 yes yes 0 0 3 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 46.856 47.181 4 0.00010086 14677 20211116_3446_TMUAki_TMT10x_S_F7 82.578 45.808 22329000 36829000 161360 38318000 36368000 51924000 28746000 57268000 69060000 45056000 42611000 20791000 34371000 1848800 39189000 34682000 52177000 30805000 57591000 67554000 44508000 41924000 9 9 4 9 9 9 9 9 9 9 9 14813000 22521000 80791 24342000 29252000 42975000 21489000 32143000 37791000 26472000 25274000 13792000 21021000 1400300 24983000 27851000 42388000 22708000 33058000 37288000 26088000 24768000 5 5 2 5 5 5 5 5 5 5 5 7515700 14308000 80565 13977000 7115600 8948400 7257300 25125000 31269000 18584000 17337000 6998500 13350000 448520 14207000 6831000 9789700 8097300 24533000 30266000 18420000 17156000 4 4 2 4 4 4 4 4 4 4 4 3357300000 1821300000 1536000000 13832 588 12712 72580;72581;72582;72583 87591;87592;87593;87594;87595;87596;87597;87598;87599 87599 564;565;566 9 MQLKPMEINPEMLNK 2 Oxidation (M) 1846.8991 0.89911203 588 P09936 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1 yes yes 0 0 2 1 By MS/MS By MS/MS 7.07 0.799 4 5 5 7 7 52.57 52.846 3;4 0.00011995 16248 20211116_3435_TMUAki_TMT10x_P_F7 88.706 60.737 79629000 129520000 990360 138420000 114870000 139240000 97860000 93178000 82042000 96424000 109590000 74149000 120890000 7844300 140590000 109760000 140760000 99663000 97159000 85133000 94039000 104860000 18 18 16 18 18 18 18 18 18 18 18 44880000 70685000 604760 76349000 86789000 107240000 69894000 49462000 42625000 50643000 59651000 41791000 65978000 4697400 77950000 82818000 106040000 70936000 53241000 45161000 49412000 57016000 10 10 8 10 10 10 10 10 10 10 10 34749000 58838000 385600 62071000 28079000 32004000 27966000 43715000 39417000 45781000 49938000 32358000 54914000 3146900 62644000 26944000 34721000 28728000 43918000 39972000 44627000 47847000 8 8 8 8 8 8 8 8 8 8 8 9159300000 5543800000 3615500000 13833 588 12712 72584;72585;72586;72587;72588;72589;72590;72591;72592;72593;72594;72595;72596;72597 87600;87601;87602;87603;87604;87605;87606;87607;87608;87609;87610;87611;87612;87613;87614;87615;87616;87617 87602 564;565;566 18 MQLKPMEINPEMLNK Oxidation (M) 1830.9042 0.90419741 588 P09936 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1 yes yes 0 0 1 1 By MS/MS By MS/MS 7.6 0.49 4 6 4 6 58.932 59.217 3;4 1.9585E-06 17666 20211116_3436_TMUAki_TMT10x_P_F8 106.14 94.448 111660000 177050000 350050 195300000 127100000 126940000 123780000 64499000 51062000 74756000 122760000 103960000 165280000 9127200 196920000 121770000 132130000 123480000 69037000 57673000 72588000 116210000 14 14 7 14 14 14 14 14 14 14 14 50475000 76188000 196510 85924000 76638000 82816000 70272000 30020000 24620000 33060000 54296000 46998000 71128000 4643800 86922000 73330000 83373000 70199000 33277000 28097000 32162000 51459000 6 6 4 6 6 6 6 6 6 6 6 61183000 100870000 153530 109370000 50464000 44126000 53512000 34480000 26443000 41696000 68468000 56964000 94150000 4483400 110000000 48435000 48761000 53282000 35759000 29577000 40425000 64748000 8 8 3 8 8 8 8 8 8 8 8 9753500000 4914500000 4839000000 13834 588 12712 72598;72599;72600;72601;72602;72603;72604;72605;72606;72607 87618;87619;87620;87621;87622;87623;87624;87625;87626;87627;87628;87629;87630;87631 87621 564;565;566 14 MQLLEIITTEK Unmodified 1317.7214 0.72138888 992 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 By matching By MS/MS 7.5 0.5 1 1 1 1 78.947 78.957 2 6.1723E-05 25380 20211116_3447_TMUAki_TMT10x_S_F8 101.39 72.65 5969500 7611800 0 8630000 6261000 4434500 6239500 3240300 3226600 3503300 5215300 5557800 7106400 453100 8669400 5999900 4749500 6236900 3362700 3484900 3410700 4969400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5969500 7611800 0 8630000 6261000 4434500 6239500 3240300 3226600 3503300 5215300 5557800 7106400 453100 8669400 5999900 4749500 6236900 3362700 3484900 3410700 4969400 1 1 0 1 1 1 1 1 1 1 1 1348800000 686440000 662360000 13835 992 12713 72608;72609 87632 87632 1 MQNDAGEFVDLYVPR Acetyl (Protein N-term);Oxidation (M) 1810.8196 0.81959938 1403 P63220 RPS21 40S ribosomal protein S21 yes yes 1 0 1 0 By MS/MS By MS/MS 2.09 0.668 2 6 3 8 3 54.159 54.086 2 2.0084E-19 27283 20211116_3439_TMUAki_TMT10x_S_F1 161.62 141.29 11335000 19631000 44098 17983000 14641000 16689000 14779000 11998000 10872000 12956000 15680000 10554000 18311000 906440 18443000 14037000 16976000 14863000 12464000 11402000 12614000 14977000 9 9 3 9 9 9 9 9 9 9 9 4569600 7247000 5632 7007300 4407100 8369800 5042800 4480600 4060000 5321700 6337600 4254000 6761300 292130 7185900 4236200 8355200 5051500 4777000 4254200 5162800 6043100 6 6 2 6 6 6 6 6 6 6 6 6765900 12384000 38466 10976000 10234000 8318900 9736200 7517600 6812400 7634400 9342600 6299700 11550000 614310 11257000 9800500 8620600 9811400 7687300 7148100 7451300 8934100 3 3 1 3 3 3 3 3 3 3 3 4513300000 2198900000 2314300000 13836 1403 12714 72610;72611;72612;72613;72614;72615;72616;72617;72618;72619;72620 87633;87634;87635;87636;87637;87638;87639;87640;87641;87642;87643 87641 1883 11 MQNDAGEFVDLYVPR Acetyl (Protein N-term) 1794.8247 0.82468476 1403 P63220 RPS21 40S ribosomal protein S21 yes yes 1 0 0 0 By MS/MS By MS/MS 2 1 2 2 2 2 67.443 67.415 2 0.018733 28163 20211116_3439_TMUAki_TMT10x_S_F1 54.005 43.482 15738000 24825000 100800 24847000 17622000 23679000 19510000 15219000 14782000 16088000 18570000 14653000 23164000 1305900 25329000 16943000 24005000 19545000 15927000 15379000 15677000 17797000 3 3 1 3 3 3 3 3 3 3 3 10550000 16395000 100800 16459000 9744100 17695000 12176000 10098000 10221000 10580000 12190000 9823400 15299000 955050 16805000 9410300 17779000 12163000 10665000 10553000 10313000 11699000 2 2 1 2 2 2 2 2 2 2 2 5188400 8429600 0 8387400 7878100 5984400 7334700 5121300 4561100 5508600 6380000 4830000 7865600 350880 8523600 7532700 6225300 7382500 5262100 4826000 5364000 6098200 1 1 0 1 1 1 1 1 1 1 1 1933800000 697560000 1236300000 13837 1403 12714 72621;72622;72623;72624 87644;87645 87645 2 MQNDAGEFVDLYVPRK Acetyl (Protein N-term);Oxidation (M) 1938.9146 0.9145624 1403 P63220 RPS21 40S ribosomal protein S21 yes yes 1 0 1 1 By MS/MS By MS/MS 3.75 0.924 1 4 4 3 5 7 67.996 67.884 2;3 2.3425E-39 24496 20211116_3441_TMUAki_TMT10x_S_F3 186.72 170.83 78652000 132410000 1382700 127570000 95102000 122240000 86056000 97004000 91730000 88051000 101950000 73240000 123530000 7721800 130400000 91024000 124300000 87939000 99633000 93434000 86364000 98035000 18 18 13 18 18 18 18 18 18 18 18 39777000 63399000 790160 61469000 44613000 81891000 47669000 49198000 46980000 44313000 50471000 37042000 59151000 4062000 63150000 42899000 81431000 48172000 51525000 47948000 43480000 48580000 9 9 7 9 9 9 9 9 9 9 9 38875000 69007000 592560 66097000 50489000 40353000 38387000 47807000 44750000 43738000 51483000 36198000 64380000 3659800 67251000 48125000 42864000 39767000 48109000 45486000 42884000 49455000 9 9 6 9 9 9 9 9 9 9 9 9226100000 4548200000 4677900000 13838 1403 12715 72625;72626;72627;72628;72629;72630;72631;72632;72633;72634;72635;72636 87646;87647;87648;87649;87650;87651;87652;87653;87654;87655;87656;87657;87658;87659;87660;87661;87662;87663;87664;87665;87666 87658 1883 21 MQNDAGEFVDLYVPRK Acetyl (Protein N-term) 1922.9196 0.91964777 1403 P63220 RPS21 40S ribosomal protein S21 yes yes 1 0 0 1 By MS/MS By MS/MS 3.88 1.05 1 2 2 3 3 5 75.492 75.417 2;3 1.4726E-14 26442 20211116_3430_TMUAki_TMT10x_P_F3 145.43 131.68 32846000 52570000 869140 53326000 36742000 36783000 37317000 20731000 18269000 22861000 37067000 30588000 49056000 3419600 54100000 35287000 38132000 37232000 21952000 20086000 22239000 35175000 9 9 6 9 9 9 9 9 9 9 9 15277000 23066000 206120 23676000 13437000 20131000 16913000 8680900 7825300 9809900 16674000 14225000 21526000 1350500 24057000 12979000 20469000 16693000 9437700 8672600 9534400 15811000 4 4 2 4 4 4 4 4 4 4 4 17569000 29503000 663020 29650000 23305000 16653000 20403000 12050000 10443000 13051000 20393000 16363000 27530000 2069100 30043000 22308000 17663000 20539000 12514000 11413000 12705000 19365000 5 5 4 5 5 5 5 5 5 5 5 2379000000 1040600000 1338400000 13839 1403 12715 72637;72638;72639;72640;72641;72642;72643;72644 87667;87668;87669;87670;87671;87672;87673;87674;87675;87676;87677;87678 87669 12 MQQENMKPQEQLTLEPYER 2 Oxidation (M) 2423.1097 0.10970974 765 P22087 FBL rRNA 2'-O-methyltransferase fibrillarin yes yes 0 0 2 1 By MS/MS By MS/MS 4 0 2 1 1 42.879 43.029 3 0.00029591 11929 20211116_3442_TMUAki_TMT10x_S_F4 67.164 59.267 1673300 3008700 0 3352900 2075400 3068600 1442700 4591800 5288500 3587400 3165700 1557700 2808800 110540 3391900 1971800 3177800 1615600 4561700 5136500 3545000 3119500 3 3 0 3 3 3 3 3 3 3 3 608880 991630 0 1181100 1505200 2154300 859070 1390600 1671300 1192700 1042500 566840 926010 51824 1206100 1426300 2117500 930320 1446500 1642400 1173000 1025200 1 1 0 1 1 1 1 1 1 1 1 1064400 2017100 0 2171700 570180 914220 583670 3201200 3617200 2394600 2123200 990860 1882800 58718 2185800 545580 1060300 685250 3115200 3494100 2372000 2094400 2 2 0 2 2 2 2 2 2 2 2 332900000 227380000 105520000 13840 765 12716 72645;72646 87679;87680;87681 87680 883;884 3 MQQHFEFEYQTK Oxidation (M) 1630.7086 0.70859237 554 P08243;P08243-2;P08243-3 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes no 0 0 1 0 By MS/MS By MS/MS 5 0.816 2 2 2 4 2 41.706 41.793 3 3.3289E-08 10114 20211116_3434_TMUAki_TMT10x_P_F6 117.93 104.95 7911400 12338000 124900 14222000 20557000 25112000 13846000 15742000 14790000 13740000 14370000 7367000 11520000 910560 14538000 19547000 24700000 14425000 16418000 14990000 13501000 13875000 6 6 4 6 6 6 6 6 6 6 6 6108600 9332100 76772 10817000 18159000 23046000 11546000 11794000 11013000 10210000 10600000 5687900 8713400 707890 11113000 17247000 22471000 12041000 12511000 11212000 10037000 10238000 4 4 2 4 4 4 4 4 4 4 4 1802900 3006200 48132 3404400 2398000 2065900 2299700 3947900 3777600 3529900 3769900 1679000 2806600 202660 3424900 2299800 2229500 2383600 3906500 3778100 3464700 3637000 2 2 2 2 2 2 2 2 2 2 2 1002400000 826690000 175720000 13841 554 12717 72647;72648;72649;72650;72651;72652 87682;87683;87684;87685;87686;87687;87688;87689;87690 87686 516 9 MQQHFEFEYQTK Unmodified 1614.7137 0.71367774 554 P08243;P08243-2;P08243-3 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 47.485 47.634 3 4.416E-09 12842 20211116_3445_TMUAki_TMT10x_S_F6 145.29 133.68 12877000 20157000 70738 23387000 24948000 24855000 19824000 14817000 15210000 14098000 19153000 11990000 18821000 1228100 23652000 23792000 25005000 20233000 15550000 15815000 13798000 18354000 6 6 3 6 6 6 6 6 6 6 6 6759200 10275000 39292 12230000 17851000 19456000 12909000 7667100 8292600 7532500 9814800 6293400 9594800 717210 12446000 16992000 19110000 13210000 8386300 8692400 7362200 9420800 3 3 1 3 3 3 3 3 3 3 3 6118200 9882600 31446 11157000 7097800 5398800 6914600 7150400 6917400 6565000 9338100 5696600 9226200 510880 11206000 6800400 5894500 7023400 7164100 7123100 6435900 8933200 3 3 2 3 3 3 3 3 3 3 3 1411000000 727230000 683740000 13842 554 12717 72653;72654;72655;72656 87691;87692;87693;87694;87695;87696 87696 6 MQQNIQELEEQLEEEESAR Oxidation (M) 2348.0438 0.043798248 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 1 0 By MS/MS By MS/MS 1 0 3 2 1 67.932 67.863 2;3 4.2909E-18 21256 20211116_3428_TMUAki_TMT10x_P_F1 155.24 133.23 11238000 19942000 54534 19084000 12107000 20843000 13074000 13285000 13755000 12984000 15803000 10463000 18605000 825190 19555000 11625000 20955000 13232000 13879000 14036000 12693000 15181000 6 6 1 6 6 6 6 6 6 6 6 8730400 14356000 54534 12959000 8369900 17661000 10557000 9872100 10213000 10592000 11084000 8128300 13391000 645170 13389000 8075600 17527000 10584000 10452000 10436000 10315000 10665000 5 5 1 5 5 5 5 5 5 5 5 2508000 5586000 0 6124900 3736900 3181900 2517000 3412700 3541900 2392300 4719500 2334800 5214300 180020 6166400 3549500 3428300 2648600 3427600 3600200 2378500 4516300 1 1 0 1 1 1 1 1 1 1 1 3745600000 2167000000 1578700000 13843 934 12718 72657;72658;72659 87697;87698;87699;87700;87701;87702 87698 1176 6 MQREEQCILYLGPR Oxidation (M) 1807.8709 0.87092344 1635 Q13451;Q13451-2 FKBP5 Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed yes no 0 0 1 1 By MS/MS By MS/MS 5.33 0.745 1 2 3 4 2 43.988 44.103 3 1.2356E-09 12286 20211116_3433_TMUAki_TMT10x_P_F5 112.08 91.277 4987500 8643700 71200 9942100 9988000 10896000 6358000 9247900 9068500 7363100 8482800 4644200 8070400 524630 10065000 9488400 11004000 6722900 9429400 9086300 7268900 8201200 3 3 2 3 3 3 3 3 3 3 3 3179200 5543200 71200 6602300 8365900 9393800 4865300 5855100 5690300 4724400 5495700 2960600 5176400 402570 6702400 7937900 9318100 5143600 6097800 5745900 4660700 5307500 2 2 2 2 2 2 2 2 2 2 2 1808400 3100500 0 3339700 1622100 1502000 1492800 3392800 3378200 2638800 2987100 1683600 2894000 122050 3362700 1550400 1686000 1579300 3331600 3340400 2608200 2893700 1 1 0 1 1 1 1 1 1 1 1 1565100000 910860000 654290000 13844 1635 12719 72660;72661;72662;72663;72664;72665 87703;87704;87705;87706;87707;87708;87709 87705 2199 7 MQREEQCILYLGPR Unmodified 1791.876 0.87600882 1635 Q13451;Q13451-2 FKBP5 Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed yes no 0 0 0 1 By MS/MS 7 0 1 1 50.012 50.663 3 0.062825 15579 20211116_3435_TMUAki_TMT10x_P_F7 38.948 30.643 8460500 14562000 0 15157000 20287000 20079000 12864000 11512000 11346000 10693000 12199000 7877500 13590000 866320 15494000 19265000 19959000 13390000 12112000 11639000 10477000 11742000 1 1 0 1 1 1 1 1 1 1 1 8460500 14562000 0 15157000 20287000 20079000 12864000 11512000 11346000 10693000 12199000 7877500 13590000 866320 15494000 19265000 19959000 13390000 12112000 11639000 10477000 11742000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 415380000 415380000 0 13845 1635 12719 72666 87710 87710 1 MQTDKPFDQTTISLQMGTNK 2 Oxidation (M) 2315.0773 0.077346983 1802 Q15417;Q15417-3;Q15417-2 CNN3 Calponin-3 yes no 0 0 2 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 49.703 50.049 4 1.0517E-09 15344 20211116_3435_TMUAki_TMT10x_P_F7 118.52 105.29 13538000 23561000 168860 22361000 16407000 22654000 12884000 20846000 22844000 17437000 18722000 12606000 21980000 1260200 22901000 15649000 23020000 13562000 21184000 22658000 17171000 18188000 6 6 5 6 6 6 6 6 6 6 6 6404400 10711000 84718 9952100 9967900 15880000 7684600 9467500 10664000 8010800 8428800 5963300 9991200 600070 10295000 9501600 15668000 8006500 9905900 10639000 7883800 8200200 3 3 2 3 3 3 3 3 3 3 3 7133900 12850000 84137 12408000 6438700 6773700 5199700 11379000 12180000 9426400 10294000 6643000 11989000 660130 12606000 6147700 7351600 5555100 11278000 12018000 9286800 9988300 3 3 3 3 3 3 3 3 3 3 3 2935300000 1560500000 1374700000 13846 1802 12720 72667;72668;72669;72670 87711;87712;87713;87714;87715;87716 87713 2426;2427 6 MQTDKPFDQTTISLQMGTNK Oxidation (M) 2299.0824 0.082432361 1802 Q15417;Q15417-3;Q15417-2 CNN3 Calponin-3 yes no 0 0 1 1 By MS/MS By MS/MS 7 0 3 2 1 53.959 54.579 3;4 5.9964E-09 17177 20211116_3435_TMUAki_TMT10x_P_F7 109.66 85.122 24353000 42043000 214540 43303000 38902000 54013000 29406000 37693000 37369000 34246000 34535000 22676000 39236000 2422700 44248000 37075000 53997000 30570000 39044000 37567000 33588000 33403000 4 4 4 4 4 4 4 4 4 4 4 17466000 29812000 197320 30992000 31918000 47284000 23385000 28053000 27551000 24685000 24892000 16264000 27822000 1834400 31777000 30402000 46733000 24295000 29392000 27752000 24248000 24095000 3 3 3 3 3 3 3 3 3 3 3 6886500 12231000 17218 12312000 6984000 6728300 6020700 9640800 9817800 9560500 9643500 6412100 11413000 588350 12471000 6673400 7264200 6275000 9652700 9815500 9340600 9308100 1 1 1 1 1 1 1 1 1 1 1 1320900000 637710000 683170000 13847 1802 12720 72671;72672;72673 87717;87718;87719;87720;87721 87719 2426;2427 5 MQTPVNIPVPVLR Acetyl (Protein N-term);Oxidation (M) 1520.8385 0.83848433 2830 Q9H840 GEMIN7 Gem-associated protein 7 yes yes 1 0 1 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 74.78 74.917 2 0.00013578 26135 20211116_3446_TMUAki_TMT10x_S_F7 81.95 34.883 2081800 3885400 34427 3249800 3059900 2356500 2899100 2248700 1842900 2008800 2628000 1938600 3623100 218380 3346900 2932000 2453300 2916400 2284500 1948900 1971800 2510800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2081800 3885400 34427 3249800 3059900 2356500 2899100 2248700 1842900 2008800 2628000 1938600 3623100 218380 3346900 2932000 2453300 2916400 2284500 1948900 1971800 2510800 1 1 1 1 1 1 1 1 1 1 1 391020000 0 391020000 13848 2830 12721 72674;72675;72676 87722;87723;87724 87724 2965 3 MRAELGEYIR Oxidation (M) 1252.6234 0.62340617 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 1 1 By MS/MS 5 0 1 1 34.301 34.479 3 0.038806 7283 20211116_3444_TMUAki_TMT10x_S_F5 52.391 20.969 402530 681910 5349.4 736800 437670 350240 439930 540950 515760 418260 595470 374840 636500 38850 742000 420040 384930 448470 536710 524210 413550 571970 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 402530 681910 5349.4 736800 437670 350240 439930 540950 515760 418260 595470 374840 636500 38850 742000 420040 384930 448470 536710 524210 413550 571970 1 1 1 1 1 1 1 1 1 1 1 19253000 0 19253000 13849 1695 12722 72677 87725 87725 2280 1 MRDPVSSQYSSFLFWR Unmodified 2004.9516 0.9516166 1585 Q13015 MLLT11 Protein AF1q yes yes 0 0 0 1 By MS/MS 5 0 1 1 73.057 73.068 3 7.0074E-15 22984 20211116_3444_TMUAki_TMT10x_S_F5 128.82 105.83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13850 1585 12723 72678 87726 87726 1 MREDDRVAIHEAMEQQTISIAK 2 Oxidation (M) 2602.2479 0.24793456 912 P33992 MCM5 DNA replication licensing factor MCM5 yes yes 0 0 2 2 By MS/MS 4 0 1 1 38.865 38.906 5 0.0084753 9933 20211116_3431_TMUAki_TMT10x_P_F4 44.258 30.803 523760 826040 7252.1 1082600 1227900 1356800 676800 844870 999590 666190 829430 487730 771740 60044 1090400 1164000 1353800 725310 879500 996750 658000 805390 1 1 1 1 1 1 1 1 1 1 1 523760 826040 7252.1 1082600 1227900 1356800 676800 844870 999590 666190 829430 487730 771740 60044 1090400 1164000 1353800 725310 879500 996750 658000 805390 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 89934000 89934000 0 13851 912 12724 72679 87727 87727 1129;1133 1 MREDYDSVEQDGDEPGPQR Oxidation (M) 2237.9131 0.91311843 3327 Q9Y5S9;Q9Y5S9-2 RBM8A RNA-binding protein 8A yes no 0 0 1 1 By MS/MS By MS/MS 1 0 2 1 1 31.54 31.564 3 1.7133E-17 6961 20211116_3428_TMUAki_TMT10x_P_F1 147.49 133.86 1072900 1435800 7827.2 3606400 5239300 3326800 1843400 2733900 6090300 1446800 3320700 999050 1347900 129650 3521600 4938700 3393100 2178800 2771100 5911800 1466000 3289100 5 5 2 5 5 5 5 5 5 5 5 388550 479080 866.5 1221600 4717300 2775800 1352100 1063900 2366300 649780 1341100 361780 449810 93300 1217000 4438600 2693500 1578900 1155700 2326600 651670 1325400 2 2 1 2 2 2 2 2 2 2 2 684380 956710 6960.7 2384800 522000 551030 491230 1670000 3724000 796970 1979700 637270 898050 36348 2304600 500120 699610 599960 1615400 3585200 814340 1963700 3 3 1 3 3 3 3 3 3 3 3 2886700000 1961500000 925160000 13852 3327 12725 72680;72681 87728;87729;87730;87731;87732 87729 3285 5 MREDYDSVEQDGDEPGPQR Unmodified 2221.9182 0.9182038 3327 Q9Y5S9;Q9Y5S9-2 RBM8A RNA-binding protein 8A yes no 0 0 0 1 By MS/MS By MS/MS 4.67 2.67 2 1 1 1 1 1 2 7 2 34.935 35.045 3 4.9882E-118 9973 20211116_3439_TMUAki_TMT10x_S_F1 370.38 351.09 2694200 3750400 75104 7761500 12431000 7750000 4658600 3337800 3533100 2418900 4923800 2509000 3514500 386970 7634600 11728000 7796800 5097000 3588800 3693000 2400300 4706700 14 14 4 14 14 14 14 14 14 14 14 2238900 3099000 75104 6038500 12155000 7594300 4401100 2827700 2983900 2087500 3901700 2085100 2902700 357580 5975900 11464000 7533500 4825700 3093400 3130200 2069200 3735400 12 12 4 12 12 12 12 12 12 12 12 455320 651420 0 1723000 276750 155680 257580 510070 549280 331460 1022100 423920 611850 29396 1658600 264600 263240 271300 495380 562800 331080 971310 2 2 0 2 2 2 2 2 2 2 2 2148100000 1815800000 332330000 13853 3327 12725 72682;72683;72684;72685;72686;72687;72688;72689;72690 87733;87734;87735;87736;87737 87737 5 MREEENEGIVQLR Oxidation (M) 1617.7781 0.77806891 2388 Q93034 CUL5 Cullin-5 yes yes 0 0 1 1 By MS/MS By matching 1 0 2 1 1 33.312 33.317 3 0.00070648 7327 20211116_3428_TMUAki_TMT10x_P_F1 79.875 47.813 113760 203600 224.78 242210 384410 315570 194540 210400 236120 163990 207650 105920 190130 13431 245460 363830 314600 208540 217840 237380 162070 201190 1 1 1 1 1 1 1 1 1 1 1 113760 203600 224.78 242210 384410 315570 194540 210400 236120 163990 207650 105920 190130 13431 245460 363830 314600 208540 217840 237380 162070 201190 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22558000 13895000 8662500 13854 2388 12726 72691;72692 87738 87738 2723 1 MREEFDK Oxidation (M) 969.42258 0.4225811 246 O43809 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 0 0 1 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 30.049 29.802 3 0.10109 8957 20211116_3441_TMUAki_TMT10x_S_F3 41.029 21.242 669150 1121200 10023 946270 873090 944860 794370 512770 574770 544770 803910 623120 1045500 67675 977680 835790 952930 803080 544110 602470 530730 768410 2 2 2 2 2 2 2 2 2 2 2 367940 581750 629.9 517060 533840 624610 427190 265310 306840 283780 436260 342600 542590 33416 533660 509230 621600 435170 288430 322020 276390 416840 1 1 1 1 1 1 1 1 1 1 1 301210 539440 9393.3 429210 339250 320250 367180 247460 267930 260990 367650 280520 502940 34259 444020 326560 331330 367910 255670 280460 254340 351570 1 1 1 1 1 1 1 1 1 1 1 26703000 7698800 19004000 13855 246 12727 72693;72694 87739 87739 197 1 MREEVITLIR Oxidation (M) 1274.7017 0.70165649 1059 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 1 1 By MS/MS By MS/MS 4 0 2 1 1 39.754 39.952 3 0.022045 10717 20211116_3442_TMUAki_TMT10x_S_F4 58.17 29.952 748280 1191900 23653 1275700 898760 783500 751880 994960 1035000 952380 1133000 696900 1112500 86188 1288100 859510 833290 779110 999660 1044000 931900 1089900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 748280 1191900 23653 1275700 898760 783500 751880 994960 1035000 952380 1133000 696900 1112500 86188 1288100 859510 833290 779110 999660 1044000 931900 1089900 1 1 1 1 1 1 1 1 1 1 1 93023000 0 93023000 13856 1059 12728 72695;72696 87740;87741 87741 1381 2 MREHLELFWSR Oxidation (M) 1518.7402 0.74016727 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 1 1 By MS/MS 7.33 0.471 2 1 3 43.535 43.904 3;4 0.001253 13275 20211116_3446_TMUAki_TMT10x_S_F7 79.283 68.337 1689900 3211200 27104 3138100 1673600 1488300 1564600 2261000 2277600 1982200 2460300 1573600 2996100 163730 3181900 1603500 1635300 1614800 2251400 2292300 1947400 2367700 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1689900 3211200 27104 3138100 1673600 1488300 1564600 2261000 2277600 1982200 2460300 1573600 2996100 163730 3181900 1603500 1635300 1614800 2251400 2292300 1947400 2367700 3 3 2 3 3 3 3 3 3 3 3 334170000 0 334170000 13857 1471 12729 72697;72698;72699 87742;87743;87744 87742 1982 3 MREIVHIQAGQCGNQIGTK Unmodified 2139.0677 0.06772577 2673 Q9BUF5 TUBB6 Tubulin beta-6 chain yes yes 0 0 0 1 By matching By MS/MS 1 0 2 1 1 40.82 40.739 4 0.007334 12244 20211116_3439_TMUAki_TMT10x_S_F1 55.536 40.842 509280 873830 1829 958090 487270 445830 487670 589610 577280 526740 733220 474210 815690 43619 963800 467330 489010 497420 590340 588900 517040 702480 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 509280 873830 1829 958090 487270 445830 487670 589610 577280 526740 733220 474210 815690 43619 963800 467330 489010 497420 590340 588900 517040 702480 1 1 1 1 1 1 1 1 1 1 1 442350000 284480000 157870000 13858 2673 12730 72700;72701 87745 87745 1 MREIVHLQAGQCGNQIGAK Unmodified 2109.0572 0.057161084 1418;488 P68371;P04350 TUBB4B;TUBB4A Tubulin beta-4B chain;Tubulin beta-4A chain no no 0 0 0 1 By MS/MS By MS/MS 4.38 3.04 11 7 1 1 8 9 17 20 40.145 40.242 3;4;5 9.6961E-64 10260 20211116_3436_TMUAki_TMT10x_P_F8 268.26 0 179320000 271230000 1724200 309420000 277800000 199190000 180990000 95683000 72647000 97106000 178630000 166960000 253230000 15567000 311310000 263900000 207400000 185290000 102550000 82408000 94781000 169030000 61 61 37 61 61 61 61 61 61 61 61 125910000 184470000 849320 210300000 214620000 165130000 127990000 63908000 48687000 65339000 122380000 117230000 172230000 10552000 212040000 203540000 168740000 131900000 70129000 55616000 63754000 115770000 27 27 17 27 27 27 27 27 27 27 27 53412000 86764000 874880 99118000 63172000 34061000 53000000 31775000 23960000 31768000 56250000 49736000 81006000 5015300 99271000 60356000 38661000 53393000 32422000 26792000 31026000 53263000 34 34 20 34 34 34 34 34 34 34 34 94018000000 67152000000 26866000000 13859 1418;488 12731 72702;72703;72704;72705;72706;72707;72708;72709;72710;72711;72712;72713;72714;72715;72716;72717;72718;72719;72720;72721;72722;72723;72724;72725;72726;72727;72728;72729;72730;72731;72732;72733;72734;72735;72736;72737;72738 87746;87747;87748;87749;87750;87751;87752;87753;87754;87755;87756;87757;87758;87759;87760;87761;87762;87763;87764;87765;87766;87767;87768;87769;87770;87771;87772;87773;87774;87775;87776;87777;87778;87779;87780;87781;87782;87783;87784;87785;87786;87787;87788;87789;87790;87791;87792;87793;87794;87795;87796;87797;87798;87799;87800;87801;87802;87803;87804;87805;87806 87768 61 MRELLAR Unmodified 887.50111 0.50110619 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 35.343 35.326 3 0.0007261 8098 20211116_3428_TMUAki_TMT10x_P_F1 138.33 100.69 850330 1262500 0 1434700 1240000 961850 892210 521300 487010 610270 941450 791670 1178700 66547 1444400 1179600 999130 910650 554910 529300 592350 894120 2 2 0 2 2 2 2 2 2 2 2 449710 655880 0 732220 809040 676570 496500 261660 234250 310220 488540 418670 612290 35761 740770 767460 683350 511840 288430 258810 300970 463410 1 1 0 1 1 1 1 1 1 1 1 400630 606630 0 702450 430980 285280 395710 259630 252760 300050 452910 373000 566410 30787 703610 412170 315780 398810 266480 270500 291380 430710 1 1 0 1 1 1 1 1 1 1 1 86529000 45603000 40926000 13860 972 12732 72739;72740 87807;87808 87807 2 MRELLAR Oxidation (M) 903.49602 0.49602082 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 1 1 By MS/MS 4.5 0.5 1 1 2 27.726 27.715 3 0.081237 5840 20211116_3433_TMUAki_TMT10x_P_F5 45.952 18.99 337670 503680 17423 456790 427950 693810 402950 468160 465220 357180 409630 314540 469810 45498 472850 410770 687120 411960 484060 468580 353420 396870 2 2 2 2 2 2 2 2 2 2 2 337670 503680 17423 456790 427950 693810 402950 468160 465220 357180 409630 314540 469810 45498 472850 410770 687120 411960 484060 468580 353420 396870 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15095000 15095000 0 13861 972 12732 72741;72742 87809;87810 87810 1240 2 MRGEAEAFAIGAR Oxidation (M) 1393.6772 0.67723266 373 O75955;O75955-2 FLOT1 Flotillin-1 yes no 0 0 1 1 By MS/MS By MS/MS 5.25 0.829 1 1 2 2 2 34.051 34.138 3 5.9843E-06 8120 20211116_3431_TMUAki_TMT10x_P_F4 103.3 69.421 1644700 2786900 46268 2948800 2858600 2906000 1937500 2324200 2494100 2164300 2321700 1531700 2601000 196480 2996100 2720600 2950000 2030700 2387700 2506900 2120400 2245000 6 6 6 6 6 6 6 6 6 6 6 874300 1424300 36436 1480500 2100300 2157200 1178300 1357700 1477000 1146800 1215600 814330 1329200 123610 1516500 1992900 2137900 1252700 1414500 1480300 1128700 1180700 2 2 2 2 2 2 2 2 2 2 2 770430 1362500 9832.6 1468300 758310 748790 759190 966500 1017100 1017500 1106100 717420 1271800 72868 1479700 727720 812090 778010 973210 1026600 991640 1064300 4 4 4 4 4 4 4 4 4 4 4 322690000 240580000 82108000 13862 373 12733 72743;72744;72745;72746 87811;87812;87813;87814;87815;87816 87811 290 6 MRGETTLWNPGCDHAGIATQVVVEK Unmodified 2768.3374 0.33741827 820 P26640;P26640-2 VARS Valine--tRNA ligase yes no 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 54.747 55.367 4 4.4358E-05 18032 20211116_3446_TMUAki_TMT10x_S_F7 64.714 47.913 5016000 8404500 120090 8441400 5671600 5974500 5098300 4093000 3905300 3829600 6060000 4671300 7842500 536960 8572200 5431100 6196300 5164500 4248500 4101600 3751100 5779100 2 2 2 2 2 2 2 2 2 2 2 2519900 3913600 19680 3817000 3210600 3991500 2857500 1987400 1802800 1796500 3084900 2346400 3651500 236930 3903400 3070700 4010500 2884300 2116100 1925700 1762400 2936200 1 1 1 1 1 1 1 1 1 1 1 2496100 4490900 100410 4624400 2461100 1983000 2240800 2105600 2102500 2033200 2975100 2324900 4191000 300030 4668700 2360300 2185800 2280200 2132400 2175900 1988700 2843000 1 1 1 1 1 1 1 1 1 1 1 1289600000 695470000 594150000 13863 820 12734 72747;72748 87817;87818 87818 2 MRGETTLWNPGCDHAGIATQVVVEKK Oxidation (M) 2912.4273 0.42729591 820 P26640;P26640-2 VARS Valine--tRNA ligase yes no 0 0 1 2 By MS/MS 8 0 1 1 49.469 49.563 5 0.028697 13963 20211116_3436_TMUAki_TMT10x_P_F8 41.562 34.285 925070 1558200 0 1813800 2021200 2284700 1274300 1511500 1338600 1257400 1410100 861300 1454900 87930 1839300 1919000 2281100 1333700 1568200 1361500 1238500 1358100 1 1 0 1 1 1 1 1 1 1 1 925070 1558200 0 1813800 2021200 2284700 1274300 1511500 1338600 1257400 1410100 861300 1454900 87930 1839300 1919000 2281100 1333700 1568200 1361500 1238500 1358100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 183460000 183460000 0 13864 820 12735 72749 87819 87819 987 1 MRGQAFVIFK Oxidation (M) 1211.6485 0.64849871 567;559 P08579;P09012 SNRPB2;SNRPA U2 small nuclear ribonucleoprotein B'';U1 small nuclear ribonucleoprotein A no no 0 0 1 1 By MS/MS 4 0 1 1 47.611 47.785 3 0.002062 13891 20211116_3442_TMUAki_TMT10x_S_F4 72.243 53.513 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13865 559;567 12736 72750 87820 87820 519 1 MRIESLSSQLSNLQK Oxidation (M) 1748.9091 0.90908309 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 1 1 By MS/MS By MS/MS 3.82 3.04 4 2 1 1 3 5 6 51.513 51.479 3;4 2.0893E-09 14210 20211116_3447_TMUAki_TMT10x_S_F8 122.93 94.634 31557000 54845000 311300 56198000 46097000 57249000 33934000 67937000 73325000 55724000 53131000 29384000 51181000 2969200 57252000 43904000 58497000 36276000 68169000 72155000 54927000 51879000 12 12 7 12 12 12 12 12 12 12 12 11526000 18853000 63380 18944000 28538000 38465000 18284000 24643000 28184000 21258000 18414000 10732000 17592000 1193600 19612000 27106000 37671000 19389000 25651000 27893000 20901000 18066000 3 3 2 3 3 3 3 3 3 3 3 20031000 35992000 247910 37254000 17560000 18784000 15650000 43295000 45141000 34467000 34717000 18652000 33589000 1775600 37640000 16799000 20826000 16887000 42518000 44262000 34026000 33813000 9 9 5 9 9 9 9 9 9 9 9 7502100000 4389000000 3113100000 13866 748 12737 72751;72752;72753;72754;72755;72756;72757;72758;72759;72760;72761 87821;87822;87823;87824;87825;87826;87827;87828;87829;87830;87831;87832;87833 87833 865 13 MRIESLSSQLSNLQK Unmodified 1732.9142 0.91416847 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.25 0.661 1 4 3 4 4 59.337 59.061 3;4 1.7693E-51 19777 20211116_3430_TMUAki_TMT10x_P_F3 283.45 262.15 27216000 45435000 363280 48503000 34216000 39906000 31570000 27205000 25084000 27497000 33641000 25343000 42407000 2685600 49136000 32763000 40898000 31961000 28310000 26106000 26843000 32188000 7 7 6 7 7 7 7 7 7 7 7 15759000 24569000 251390 27313000 21838000 30138000 21059000 15555000 14310000 15679000 18805000 14675000 22935000 1626000 27712000 20935000 30201000 21193000 16555000 15012000 15308000 18002000 4 4 4 4 4 4 4 4 4 4 4 11457000 20866000 111890 21190000 12379000 9767700 10512000 11650000 10775000 11819000 14836000 10668000 19472000 1059600 21424000 11829000 10698000 10768000 11755000 11094000 11536000 14186000 3 3 2 3 3 3 3 3 3 3 3 7958900000 4800200000 3158700000 13867 748 12737 72762;72763;72764;72765;72766;72767;72768;72769 87834;87835;87836;87837;87838;87839;87840 87836 7 MRIPVAR Unmodified 841.49563 0.49562689 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4;Q7Z4S6-6 KIF21A Kinesin-like protein KIF21A yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 32.61 32.365 3 0.011919 9982 20211116_3441_TMUAki_TMT10x_S_F3 85.359 50.159 511980 856550 6183.4 800730 571250 495520 594070 369370 361620 389030 548110 476750 799050 49039 816250 548690 520800 594200 382510 384680 379140 522970 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 511980 856550 6183.4 800730 571250 495520 594070 369370 361620 389030 548110 476750 799050 49039 816250 548690 520800 594200 382510 384680 379140 522970 1 1 1 1 1 1 1 1 1 1 1 34908000 0 34908000 13868 2082 12738 72770;72771 87841;87842 87842 2 MRLESLSYQLSGLQK Unmodified 1751.924 0.92400487 1505 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0 2 1 1 63.742 63.456 3 9.7673E-10 22680 20211116_3441_TMUAki_TMT10x_S_F3 110.35 76.379 8204700 13522000 128220 14133000 9961600 16486000 11005000 8777500 7580600 8136800 9658500 7640400 12620000 824330 14410000 9585600 16477000 11002000 9294200 7935600 7973200 9252900 2 2 2 2 2 2 2 2 2 2 2 8204700 13522000 128220 14133000 9961600 16486000 11005000 8777500 7580600 8136800 9658500 7640400 12620000 824330 14410000 9585600 16477000 11002000 9294200 7935600 7973200 9252900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 367060000 367060000 0 13869 1505 12739 72772;72773 87843;87844;87845 87845 3 MRLESLSYQLSGLQK Oxidation (M) 1767.9189 0.91891949 1505 Q03252 LMNB2 Lamin-B2 yes yes 0 0 1 1 By MS/MS 2 0 1 1 56.681 56.466 3 0.070238 16954 20211116_3440_TMUAki_TMT10x_S_F2 40.693 17.467 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13870 1505 12739 72774 87846 87846 2043 1 MRNGIDILVGTPGR Oxidation (M) 1513.8035 0.8034958 2918 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 1 1 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 43.187 43.28 3 0.00037998 13329 20211116_3439_TMUAki_TMT10x_S_F1 72.428 60.159 1930600 3420800 12374 3487600 3234400 4120800 2398200 3446600 3441200 2786100 3036100 1797600 3192300 184660 3562700 3080700 4143800 2508600 3518500 3440800 2748300 2941300 2 2 1 2 2 2 2 2 2 2 2 954000 1702200 0 1769800 2170700 3042100 1490300 1426100 1476500 1257300 1416200 888230 1588600 90939 1819700 2063900 2984300 1546900 1526500 1500600 1234900 1368100 1 1 0 1 1 1 1 1 1 1 1 976600 1718600 12374 1717800 1063700 1078700 907840 2020500 1964700 1528800 1619800 909400 1603700 93719 1742900 1016800 1159500 961730 1992000 1940200 1513400 1573300 1 1 1 1 1 1 1 1 1 1 1 272460000 171090000 101370000 13871 2918 12740 72775;72776;72777 87847;87848;87849 87848 3020 3 MRPFEGFQR Unmodified 1166.5655 0.56549736 2675 Q9BUJ2;Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2-3 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 40.087 40.018 3 0.059389 11973 20211116_3439_TMUAki_TMT10x_S_F1 43.419 29.424 1761400 2633000 17497 3089700 2633100 2494800 1791400 1789900 1727700 1739700 2261400 1640100 2458600 171770 3110900 2504500 2562400 1859100 1853900 1779400 1701200 2165000 2 2 1 2 2 2 2 2 2 2 2 994220 1465600 17497 1678300 1964800 1940000 997760 1109600 1036200 1074400 1265800 925850 1368300 112330 1701100 1860700 1941500 1063800 1169000 1060600 1050800 1214000 1 1 1 1 1 1 1 1 1 1 1 767140 1167400 0 1411400 668350 554780 793650 680290 691540 665260 995580 714260 1090200 59442 1409800 643810 620830 795320 684890 718780 650350 950990 1 1 0 1 1 1 1 1 1 1 1 90806000 69033000 21772000 13872 2675 12741 72778;72779 87850 87850 1 MRPFEGFQR Oxidation (M) 1182.5604 0.56041199 2675 Q9BUJ2;Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2-3 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 0 0 1 1 By MS/MS 1.5 0.5 1 1 2 33.116 33.154 3 0.039466 7415 20211116_3440_TMUAki_TMT10x_S_F2 52.278 33.184 863550 1365500 38735 1556300 806820 697720 835920 810140 806070 781960 1033800 804340 1274900 106900 1561400 776700 766280 845460 817170 829420 764860 990210 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 863550 1365500 38735 1556300 806820 697720 835920 810140 806070 781960 1033800 804340 1274900 106900 1561400 776700 766280 845460 817170 829420 764860 990210 2 2 2 2 2 2 2 2 2 2 2 23148000 0 23148000 13873 2675 12741 72780;72781 87851 87851 2890 1 MRYVASYLLAALGGNSSPSAK Oxidation (M) 2171.1045 0.10448843 507 P05387 RPLP2 60S acidic ribosomal protein P2 yes yes 0 0 1 1 By MS/MS By MS/MS 6.22 0.786 2 3 4 5 4 71.459 71.597 3;4 2.46E-07 22795 20211116_3445_TMUAki_TMT10x_S_F6 91.811 69.801 61874000 104300000 583750 91115000 67669000 101550000 76193000 77444000 71445000 79217000 77094000 57611000 97272000 5285000 94040000 65103000 102260000 76693000 80010000 73091000 77294000 74195000 14 14 8 14 14 14 14 14 14 14 14 31418000 48418000 107920 43271000 28833000 61849000 36448000 38053000 33836000 36454000 37005000 29251000 45160000 2275600 44785000 27819000 61327000 36491000 39843000 34649000 35669000 35599000 6 6 3 6 6 6 6 6 6 6 6 30455000 55880000 475830 47844000 38836000 39698000 39745000 39391000 37609000 42763000 40090000 28360000 52112000 3009400 49255000 37284000 40938000 40201000 40166000 38442000 41625000 38596000 8 8 5 8 8 8 8 8 8 8 8 12714000000 5352200000 7362100000 13874 507 12742 72782;72783;72784;72785;72786;72787;72788;72789;72790 87852;87853;87854;87855;87856;87857;87858;87859;87860;87861;87862;87863;87864;87865;87866 87862 410 15 MSAEINEIIR Oxidation (M) 1190.5965 0.59652272 717 P18206;P18206-2;P18206-3 VCL Vinculin yes no 0 0 1 0 By MS/MS By MS/MS 3 0 2 1 1 45.15 44.989 2 0.0027416 15110 20211116_3441_TMUAki_TMT10x_S_F3 82.831 63.727 1804400 2706800 39330 3375300 3035400 3405200 2206700 3093600 3197400 2484500 2953400 1680400 2528300 203490 3396600 2892100 3460200 2312300 3142800 3200800 2451600 2856600 2 2 2 2 2 2 2 2 2 2 2 957870 1424300 30195 1782800 2217200 2611300 1497800 1495200 1582200 1254300 1489300 892100 1330400 125190 1805800 2109700 2584000 1559500 1569300 1602600 1235000 1439600 1 1 1 1 1 1 1 1 1 1 1 846540 1282500 9134.6 1592500 818270 793920 708930 1598400 1615200 1230200 1464100 788280 1197900 78301 1590800 782400 876130 752870 1573500 1598200 1216600 1417000 1 1 1 1 1 1 1 1 1 1 1 199210000 115540000 83662000 13875 717 12743 72791;72792 87867;87868 87868 821 2 MSATFIGNSTAIQELFKR Oxidation (M) 2029.0303 0.030260856 1418;1668;2689 P68371;Q13885;Q9BVA1 TUBB4B;TUBB2A;TUBB2B Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain no no 0 0 1 1 By MS/MS By MS/MS 3.25 0.433 3 1 1 3 71.211 70.899 3;4 4.4592E-18 25652 20211116_3441_TMUAki_TMT10x_S_F3 157.47 6.0774 22057000 39834000 319790 33850000 23586000 24358000 29716000 26636000 29943000 24240000 29680000 20539000 37147000 2042400 34813000 22782000 25451000 29829000 26895000 30443000 23772000 28640000 5 5 3 5 5 5 5 5 5 5 5 1496900 2601800 58477 2317200 1590300 3514700 1941100 1861400 1727800 1593300 2011300 1394200 2426700 179910 2402000 1537200 3469600 1944000 1968000 1777100 1567200 1931500 1 1 1 1 1 1 1 1 1 1 1 20560000 37232000 261310 31532000 21996000 20843000 27775000 24774000 28215000 22646000 27669000 19145000 34720000 1862500 32411000 21245000 21982000 27885000 24927000 28666000 22205000 26708000 4 4 2 4 4 4 4 4 4 4 4 3758000000 361220000 3396800000 13876 1418;1668;2689 12744 72793;72794;72795;72796 87869;87870;87871;87872;87873 87870 1912 5 MSATFIGNSTAIQELFKR Unmodified 2013.0353 0.035346234 1418;1668;2689 P68371;Q13885;Q9BVA1 TUBB4B;TUBB2A;TUBB2B Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain no no 0 0 0 1 By MS/MS 5 0 1 1 76.968 76.992 3 0.00019895 25730 20211116_3433_TMUAki_TMT10x_P_F5 72.627 3.8378 20577000 33598000 0 33270000 18726000 30394000 21283000 13193000 12040000 14214000 20775000 19157000 31349000 1449600 33921000 18004000 30754000 21169000 14312000 12963000 13840000 19770000 1 1 0 1 1 1 1 1 1 1 1 20577000 33598000 0 33270000 18726000 30394000 21283000 13193000 12040000 14214000 20775000 19157000 31349000 1449600 33921000 18004000 30754000 21169000 14312000 12963000 13840000 19770000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1963300000 1963300000 0 13877 1418;1668;2689 12744 72797 87874 87874 1 MSAYAFFVQTCR Oxidation (M) 1495.6588 0.6588054 182 O15347 HMGB3 High mobility group protein B3 yes yes 0 0 1 0 By MS/MS By MS/MS 3 0 2 1 1 59.68 59.423 2 0.00011862 21059 20211116_3441_TMUAki_TMT10x_S_F3 89.561 25.867 1947700 3258000 211.92 3042200 2774900 5100200 2493700 2668300 2462000 2422500 2752900 1813500 3039200 173260 3149600 2653600 5014100 2543200 2828300 2516300 2376000 2646600 1 1 1 1 1 1 1 1 1 1 1 1947700 3258000 211.92 3042200 2774900 5100200 2493700 2668300 2462000 2422500 2752900 1813500 3039200 173260 3149600 2653600 5014100 2543200 2828300 2516300 2376000 2646600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 240270000 240270000 0 13878 182 12745 72798;72799 87875;87876 87876 134 2 MSAYAFFVQTCREEHK Oxidation (M) 2018.8979 0.89786647 182 O15347 HMGB3 High mobility group protein B3 yes yes 0 0 1 1 By MS/MS 7 0 1 1 48.039 48.634 4 9.3605E-08 14759 20211116_3435_TMUAki_TMT10x_P_F7 116.78 15.771 5210200 8463000 92744 9034100 8814200 13123000 6534500 7284200 7283600 6330500 6905400 4851300 7899000 495690 9237100 8395100 12986000 6770600 7672200 7363600 6222000 6673100 2 2 1 2 2 2 2 2 2 2 2 5210200 8463000 92744 9034100 8814200 13123000 6534500 7284200 7283600 6330500 6905400 4851300 7899000 495690 9237100 8395100 12986000 6770600 7672200 7363600 6222000 6673100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 888560000 888560000 0 13879 182 12746 72800 87877;87878 87877 134 2 MSAYAFFVQTCREEHK Unmodified 2002.903 0.90295185 182 O15347 HMGB3 High mobility group protein B3 yes yes 0 0 0 1 By MS/MS By MS/MS 4.75 3.27 1 1 2 1 3 55.998 55.889 4 2.0816E-07 18536 20211116_3439_TMUAki_TMT10x_S_F1 112.34 101.08 12684000 20792000 235220 22142000 16320000 16426000 13591000 12794000 11218000 12033000 15460000 11811000 19406000 1292200 22407000 15592000 17005000 13855000 13168000 11667000 11784000 14783000 3 3 2 3 3 3 3 3 3 3 3 5478900 8552700 187720 9333500 7577800 10442000 6909400 5621700 4881900 5138400 6747700 5102800 7983500 658590 9483100 7260500 10461000 6980700 5944600 5121400 5038300 6451500 1 1 1 1 1 1 1 1 1 1 1 7204800 12239000 47495 12808000 8742300 5984100 6681700 7171800 6336500 6894800 8712600 6708500 11423000 633650 12924000 8331600 6543800 6874600 7223600 6545700 6745200 8331200 2 2 1 2 2 2 2 2 2 2 2 1556100000 630640000 925430000 13880 182 12746 72801;72802;72803;72804 87879;87880;87881 87880 3 MSAYAFFVQTCREEHKK Oxidation (M) 2146.9928 0.99282949 182 O15347 HMGB3 High mobility group protein B3 yes yes 0 0 1 2 By MS/MS By MS/MS 3 2.92 2 1 1 2 2 45.295 45.27 5 3.9211E-15 11982 20211116_3428_TMUAki_TMT10x_P_F1 143.28 11.778 5875500 10669000 78736 12068000 12486000 14784000 8131000 13543000 10594000 10248000 10491000 5471100 9960800 629180 12253000 11866000 14866000 8551600 13734000 10666000 10144000 10124000 5 5 4 5 5 5 5 5 5 5 5 3912100 7221500 72490 8213300 10210000 12837000 6560500 8995500 7033100 6735200 6837800 3643100 6742200 480110 8378000 9702600 12706000 6860100 9272200 7127400 6671100 6602300 3 3 3 3 3 3 3 3 3 3 3 1963400 3447700 6246.2 3854300 2276300 1947500 1570500 4547400 3560800 3512500 3653200 1828000 3218600 149080 3874800 2163700 2160000 1691600 4461300 3538700 3473100 3521200 2 2 1 2 2 2 2 2 2 2 2 1141900000 646580000 495350000 13881 182 12747 72805;72806;72807;72808 87882;87883;87884;87885;87886 87883 134 5 MSAYAFFVQTCREEHKK Unmodified 2130.9979 0.99791487 182 O15347 HMGB3 High mobility group protein B3 yes yes 0 0 0 2 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 51.576 51.351 5 1.0653E-21 17713 20211116_3441_TMUAki_TMT10x_S_F3 173.03 163.11 9836000 16411000 12934 17736000 13409000 13714000 10248000 8740000 6971200 8792100 11708000 9156600 15318000 657920 17940000 12764000 14108000 10459000 9138800 7403500 8584700 11147000 4 4 1 4 4 4 4 4 4 4 4 4248300 6621000 0 7210400 6954900 9153900 5610100 3902300 2479000 3381300 4694800 3954800 6180300 289480 7343200 6628300 9087500 5664000 4217000 2737600 3323800 4460300 2 2 0 2 2 2 2 2 2 2 2 5587700 9790300 12934 10525000 6454000 4560400 4637600 4837700 4492200 5410900 7013000 5201800 9138100 368440 10596000 6135800 5020000 4794600 4921800 4665900 5260900 6687100 2 2 1 2 2 2 2 2 2 2 2 1087900000 679190000 408710000 13882 182 12747 72809;72810;72811;72812 87887;87888;87889;87890 87890 4 MSDLTCVLEWLERR Carbamidomethyl (C);Oxidation (M) 1879.8921 0.89205282 2291 Q8WTQ4 C16orf78 Uncharacterized protein C16orf78 yes yes 0 1 1 1 By MS/MS 4 0 1 1 64.342 64.185 2 0.0358 20684 20211116_3442_TMUAki_TMT10x_S_F4 44.318 14.544 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13883 2291 12748 72813 87891 87891 23 2658 1 MSGGWELELNGTEAK Oxidation (M) 1636.7403 0.74028642 1535 Q07021 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 3.5 0.957 2 4 4 2 6 6 58.708 58.602 2;3 1.3646E-29 18422 20211116_3442_TMUAki_TMT10x_S_F4 208.79 181.36 36975000 58693000 54784 54323000 41364000 50491000 45791000 31350000 26763000 31861000 44850000 34425000 54750000 2778700 55669000 39750000 51243000 45627000 32856000 28701000 31096000 42706000 8 8 2 8 8 8 8 8 8 8 8 20848000 33052000 0 31628000 25611000 36861000 27379000 17746000 15114000 18395000 24391000 19409000 30836000 1485000 32445000 24581000 36799000 27300000 19027000 16242000 17938000 23242000 5 5 0 5 5 5 5 5 5 5 5 16127000 25640000 54784 22694000 15753000 13630000 18412000 13605000 11649000 13467000 20459000 15016000 23914000 1293700 23225000 15169000 14444000 18327000 13829000 12459000 13158000 19464000 3 3 2 3 3 3 3 3 3 3 3 5185500000 2684100000 2501300000 13884 1535 12749 72814;72815;72816;72817;72818;72819;72820;72821;72822;72823;72824;72825 87892;87893;87894;87895;87896;87897;87898;87899;87900;87901;87902 87902 2068 11 MSGGWELELNGTEAK Unmodified 1620.7454 0.7453718 1535 Q07021 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3.78 0.916 1 2 4 2 4 5 72.727 72.57 2;3 2.1993E-43 21187 20211116_3442_TMUAki_TMT10x_S_F4 262.43 229.48 8931200 15306000 103140 15464000 10221000 7954000 10012000 7921500 6607900 7598800 10881000 8316400 14283000 823960 15652000 9799200 8565400 10061000 8046000 7023000 7434700 10364000 4 4 1 4 4 4 4 4 4 4 4 18004 26316 0 34419 22762 32201 27057 18331 20157 15493 24355 16764 24586 0 34508 21934 32629 27007 19253 20957 15248 23365 1 1 0 1 1 1 1 1 1 1 1 8913200 15280000 103140 15429000 10198000 7921800 9984600 7903100 6587800 7583300 10857000 8299600 14258000 823960 15617000 9777300 8532800 10034000 8026700 7002000 7419400 10341000 3 3 1 3 3 3 3 3 3 3 3 1727700000 429860000 1297800000 13885 1535 12749 72826;72827;72828;72829;72830;72831;72832;72833;72834 87903;87904;87905;87906;87907;87908;87909;87910 87909 8 MSILGVR Oxidation (M) 790.43711 0.43710895 2370 Q92878;Q92878-2 RAD50 DNA repair protein RAD50 yes no 0 0 1 0 By MS/MS By MS/MS 8 0 2 1 1 37.273 37.671 2 0.072488 9064 20211116_3436_TMUAki_TMT10x_P_F8 69.093 34.377 917880 1443000 14001 1398000 1274400 1361800 1010000 942740 963590 906250 1171300 854740 1346300 94141 1428800 1216200 1380100 1036900 978570 989690 886600 1123500 2 2 2 2 2 2 2 2 2 2 2 541780 809810 4043.4 780790 921010 1027100 618160 551700 545050 503830 647990 504480 755530 53997 802270 875740 1020400 640600 583490 561350 494040 621910 1 1 1 1 1 1 1 1 1 1 1 376100 633180 9957.8 617210 353400 334720 391860 391050 418540 402420 523330 350260 590760 40144 626560 340420 359680 396290 395090 428340 392560 501600 1 1 1 1 1 1 1 1 1 1 1 26659000 19197000 7461500 13886 2370 12750 72835;72836 87911 87911 2708 1 MSKQVSLPEMIK Acetyl (Protein N-term);2 Oxidation (M) 1463.7364 0.73638702 2139 Q8IVG5;Q8IVG5-2 SAMD9L Sterile alpha motif domain-containing protein 9-like yes no 1 0 2 1 By MS/MS 3 1 1 1 2 79.807 79.816 2 0.001816 26583 20211116_3431_TMUAki_TMT10x_P_F4 64.04 37.367 1186900 1935000 0 1701000 1045000 1926100 1248600 1056800 1039700 1147900 1425200 1105000 1804700 83311 1755200 1006300 1928800 1249400 1121100 1080500 1117400 1362900 1 1 0 1 1 1 1 1 1 1 1 1186900 1935000 0 1701000 1045000 1926100 1248600 1056800 1039700 1147900 1425200 1105000 1804700 83311 1755200 1006300 1928800 1249400 1121100 1080500 1117400 1362900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1162900000 1162900000 0 13887 2139 12751 72837;72838 87912;87913 87913 2607;2608 2 MSMKEVDEQMLNVQNK 3 Oxidation (M) 1970.8747 0.87474777 1418;1668;2689;539 P07437;P68371;Q13885;Q9BVA1 TUBB;TUBB4B;TUBB2A;TUBB2B Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain no no 0 0 3 1 By MS/MS By MS/MS 5 0 3 1 2 37.213 37.317 3;4 1.344E-05 9675 20211116_3433_TMUAki_TMT10x_P_F5 96.163 72.122 870570 1493200 9786.3 1291300 2276200 2131600 1289000 2318300 2662400 1643300 1924000 810660 1392500 100980 1344200 2158300 2123900 1401600 2327500 2622200 1632700 1878900 3 3 3 3 3 3 3 3 3 3 3 499790 764190 8952.7 776480 1704500 1629800 982440 933120 1058800 691510 928660 465420 713120 66652 804030 1616800 1592000 1036700 976660 1069200 685310 899870 1 1 1 1 1 1 1 1 1 1 1 370780 728970 833.58 514820 571670 501810 306560 1385200 1603600 951780 995350 345240 679400 34331 540130 541530 531860 364970 1350800 1553000 947420 979000 2 2 2 2 2 2 2 2 2 2 2 191640000 123620000 68017000 13888 539;1418;1668;2689 12752 72839;72840;72841 87914;87915;87916 87914 465;468;469 3 MSMKEVDEQMLNVQNK 2 Oxidation (M) 1954.8798 0.87983315 1418;1668;2689;539 P07437;P68371;Q13885;Q9BVA1 TUBB;TUBB4B;TUBB2A;TUBB2B Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain no no 0 0 2 1 By MS/MS 5 0 1 1 42.651 42.731 3 0.0091259 11746 20211116_3433_TMUAki_TMT10x_P_F5 56.599 35.399 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13889 539;1418;1668;2689 12752 72842 87917 87917 465;468;469 1 MSNALAIQVDSEGK Oxidation (M) 1477.7083 0.70825802 1649 Q13573 SNW1 SNW domain-containing protein 1 yes yes 0 0 1 0 By MS/MS 4 0 1 1 47.404 47.577 3 0.0089279 13806 20211116_3442_TMUAki_TMT10x_S_F4 59.862 40.023 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13890 1649 12753 72843 87918 87918 2217 1 MSNYDTDLFVPYFEAIQK Unmodified 2180.0136 0.013607739 1104 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 7 1 2 2 2 2 80.377 80.372 3 0.0058496 25890 20211116_3434_TMUAki_TMT10x_P_F6 54.171 38.406 8331900 13769000 6484 13751000 10565000 12174000 12463000 6046900 6692500 7441100 11537000 7757600 12848000 454310 14006000 10175000 12362000 12364000 6499100 7232900 7209900 10979000 5 5 1 5 5 5 5 5 5 5 5 3854800 6204900 6484 6422200 4437000 7388600 5183300 3148500 3585900 3937200 5171600 3589200 5790700 238580 6550800 4273200 7372100 5169200 3438700 3774200 3812800 4939800 3 3 1 3 3 3 3 3 3 3 3 4477100 7564300 0 7328600 6127600 4785800 7279800 2898500 3106700 3503900 6365400 4168300 7057400 215730 7455000 5902000 4989900 7194800 3060300 3458700 3397100 6039600 2 2 0 2 2 2 2 2 2 2 2 4486400000 2325200000 2161300000 13891 1104 12754 72844;72845;72846;72847 87919;87920;87921 87919 3 MSNYDTDLFVPYFEAIQK Oxidation (M) 2196.0085 0.0085223609 1104 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 1 0 By MS/MS By MS/MS 7 0.816 2 2 2 2 4 79.629 79.645 3 2.962E-06 28114 20211116_3446_TMUAki_TMT10x_S_F7 95.205 83.731 14823000 24890000 538230 24389000 18478000 26326000 21442000 19390000 21695000 21168000 22747000 13805000 23223000 1781700 24945000 17825000 26544000 21603000 20118000 22097000 20600000 21911000 6 6 6 6 6 6 6 6 6 6 6 7083900 11600000 397430 11828000 7983000 15676000 9841600 8502700 9696400 9544500 10456000 6598800 10825000 970290 12108000 7725300 15571000 9881100 9038100 9897700 9278700 10063000 3 3 3 3 3 3 3 3 3 3 3 7738800 13290000 140800 12561000 10495000 10650000 11601000 10887000 11999000 11623000 12291000 7206600 12398000 811420 12837000 10100000 10973000 11722000 11079000 12200000 11322000 11848000 3 3 3 3 3 3 3 3 3 3 3 5832600000 3224600000 2608000000 13892 1104 12754 72848;72849;72850;72851;72852;72853 87922;87923;87924;87925;87926;87927;87928;87929 87927 1469 8 MSPDEGQEELEEVQAELK Unmodified 2059.9256 0.92558059 2860 Q9HC07;Q9HC07-2 TMEM165 Transmembrane protein 165 yes no 0 0 0 0 By MS/MS 1 0 1 1 76.263 76.263 3 9.3625E-05 24741 20211116_3428_TMUAki_TMT10x_P_F1 73.688 62.9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13893 2860 12755 72854 87930 87930 1 MSPDEGQEELEEVQAELK Oxidation (M) 2075.9205 0.92049521 2860 Q9HC07;Q9HC07-2 TMEM165 Transmembrane protein 165 yes no 0 0 1 0 By MS/MS 1 0 1 1 69.296 69.108 3 4.6507E-12 23855 20211116_3439_TMUAki_TMT10x_S_F1 126.25 102.69 1835800 3702900 63060 3171000 3230900 2461200 2506500 2854800 2786100 2427400 3069400 1709800 3453200 230510 3261900 3083600 2559900 2589000 2869900 2832200 2388400 2952200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1835800 3702900 63060 3171000 3230900 2461200 2506500 2854800 2786100 2427400 3069400 1709800 3453200 230510 3261900 3083600 2559900 2589000 2869900 2832200 2388400 2952200 1 1 1 1 1 1 1 1 1 1 1 579770000 0 579770000 13894 2860 12755 72855 87931 87931 2984 1 MSPYKDILETHLR Oxidation (M) 1617.8185 0.81847717 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 1 By MS/MS By MS/MS 7 0 2 1 1 46.616 47.144 4 2.4111E-09 14663 20211116_3446_TMUAki_TMT10x_S_F7 133.04 117.27 2343800 4122000 133110 3722000 3631800 4975000 2619800 5250800 4937600 4392500 4110300 2183300 3844800 336410 3844100 3464900 4997100 2782000 5299100 4892300 4325300 3990700 2 2 2 2 2 2 2 2 2 2 2 1297900 2167200 92443 1882000 2577000 3745900 1665500 2701700 2537200 2198700 2101000 1209200 2021100 211670 1968000 2453600 3677600 1764000 2784600 2527500 2168100 2040200 1 1 1 1 1 1 1 1 1 1 1 1045900 1954800 40667 1840000 1054800 1229200 954280 2549100 2400400 2193700 2009300 974090 1823600 124730 1876100 1011300 1319600 1018000 2514500 2364800 2157200 1950400 1 1 1 1 1 1 1 1 1 1 1 894250000 677380000 216860000 13895 1433 12756 72856;72857 87932;87933 87933 1941 2 MSQEEVNVFR Oxidation (M) 1253.571 0.57103625 2049 Q7L014 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 0 0 1 0 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 36.429 36.503 2 0.0020421 9530 20211116_3430_TMUAki_TMT10x_P_F3 90.15 60.341 439730 628220 171.97 805950 377660 334240 396650 441810 505150 393590 597930 409390 586860 31092 802600 362300 372010 404710 442330 512450 386390 573930 3 3 1 3 3 3 3 3 3 3 3 19822 32953 171.97 47290 77152 57268 36202 28767 44150 22268 34704 18457 30802 2606.6 47380 72958 57085 39109 30492 44232 22016 33770 1 1 1 1 1 1 1 1 1 1 1 419900 595270 0 758660 300510 276970 360450 413050 461000 371320 563220 390940 556060 28485 755220 289350 314930 365600 411840 468210 364370 540160 2 2 0 2 2 2 2 2 2 2 2 16467000 4597700 11870000 13896 2049 12757 72858;72859;72860 87934;87935;87936;87937 87934 2564 4 MSQVAPSLSALIGEAVGAR Oxidation (M) 1871.9775 0.977497 103 O00567 NOP56 Nucleolar protein 56 yes yes 0 0 1 0 By MS/MS By MS/MS 6.57 2.32 1 3 3 5 2 78.688 78.701 2;3 1.1298E-17 25863 20211116_3436_TMUAki_TMT10x_P_F8 156.96 130.36 15738000 25583000 0 25059000 17584000 24179000 18891000 13324000 13195000 15992000 18492000 14651000 23870000 953220 25588000 16868000 24443000 18917000 14174000 13861000 15509000 17674000 4 4 0 4 4 4 4 4 4 4 4 10280000 17081000 0 16113000 11305000 19343000 12276000 10062000 9880600 11763000 12162000 9568700 15935000 533650 16554000 10842000 19298000 12327000 10750000 10238000 11419000 11661000 3 3 0 3 3 3 3 3 3 3 3 5458400 8502500 0 8946300 6279000 4835900 6614800 3261300 3314000 4228600 6330000 5081900 7935400 419570 9033900 6026100 5144700 6590000 3424300 3622900 4090000 6013000 1 1 0 1 1 1 1 1 1 1 1 3826900000 3048000000 778920000 13897 103 12758 72861;72862;72863;72864;72865;72866;72867 87938;87939;87940;87941;87942 87940 79 5 MSQVAPSLSALIGEAVGAR Unmodified 1855.9826 0.98258238 103 O00567 NOP56 Nucleolar protein 56 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 2 4 3 3 80.05 80.003 2;3 1.1913E-70 29232 20211116_3441_TMUAki_TMT10x_S_F3 287.03 247.77 12009000 18828000 172630 18634000 12974000 16389000 14896000 8966300 7471700 9938800 13341000 11182000 17568000 942440 18990000 12490000 16667000 14779000 9520000 8134400 9666700 12688000 6 6 3 6 6 6 6 6 6 6 6 5553500 8967800 81671 8498500 5593400 10127000 7212200 4722600 3974900 5100900 6445700 5171000 8366200 479480 8727400 5405100 10095000 7130800 5085700 4273100 4966200 6141500 3 3 2 3 3 3 3 3 3 3 3 6455700 9860500 90957 10136000 7380300 6261400 7683600 4243700 3496900 4838000 6895300 6010900 9201900 462960 10263000 7084600 6572400 7648400 4434300 3861300 4700500 6546400 3 3 1 3 3 3 3 3 3 3 3 5581900000 3743500000 1838400000 13898 103 12758 72868;72869;72870;72871;72872;72873 87943;87944;87945;87946;87947;87948 87948 6 MSSFGDFVALSDVCDVPTAK Oxidation (M) 2160.9708 0.97075665 892 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 1 0 By MS/MS By MS/MS 5.6 0.49 2 3 3 2 77.407 77.395 2;3 1.2202E-06 25053 20211116_3445_TMUAki_TMT10x_S_F6 85.231 68.738 12745000 21198000 248460 18617000 14630000 20446000 15288000 15482000 15163000 15476000 16751000 11869000 19770000 1306000 19202000 14059000 20604000 15469000 15991000 15488000 15115000 16110000 5 5 4 5 5 5 5 5 5 5 5 6523100 10629000 171400 9014400 5772100 12392000 7336500 7443900 7365500 7080800 8153300 6074900 9911900 681450 9360700 5583700 12304000 7360900 7807300 7519800 6930400 7840800 3 3 2 3 3 3 3 3 3 3 3 6222100 10569000 77057 9602600 8858100 8054000 7951600 8037900 7797900 8394800 8598000 5794000 9858300 624590 9841300 8475400 8300000 8108300 8183900 7968100 8184100 8269400 2 2 2 2 2 2 2 2 2 2 2 6082200000 3083900000 2998400000 13899 892 12759 72874;72875;72876;72877;72878 87949;87950;87951;87952;87953 87953 1084 5 MSSFGDFVALSDVCDVPTAK Unmodified 2144.9758 0.97584202 892 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 By MS/MS By MS/MS 6.4 1.02 1 2 1 1 4 1 78.856 78.862 3 3.3337E-18 25270 20211116_3434_TMUAki_TMT10x_P_F6 145.43 129.48 16653000 26497000 228240 25713000 17178000 22607000 18166000 10054000 9481800 12327000 17674000 15506000 24721000 1477300 26240000 16502000 22940000 18106000 10924000 10317000 11946000 16796000 5 5 3 5 5 5 5 5 5 5 5 11311000 17752000 228240 16928000 10733000 17982000 12437000 7738900 6888700 9169300 11988000 10534000 16561000 1137900 17343000 10347000 18023000 12355000 8428100 7431800 8896300 11407000 4 4 3 4 4 4 4 4 4 4 4 5341500 8744700 0 8784700 6445400 4625100 5729200 2315300 2593200 3158100 5685300 4972500 8159900 339410 8896800 6154400 4916400 5751700 2495800 2885100 3049700 5388700 1 1 0 1 1 1 1 1 1 1 1 5152400000 3398300000 1754100000 13900 892 12759 72879;72880;72881;72882;72883 87954;87955;87956;87957;87958 87955 5 MSSTFIGNSTAIQELFKR Oxidation (M) 2045.0252 0.025175478 1640 Q13509;Q13509-2 TUBB3 Tubulin beta-3 chain yes no 0 0 1 1 By MS/MS By MS/MS 2.6 0.49 2 3 2 3 69.649 69.321 3;4 4.6133E-41 25043 20211116_3441_TMUAki_TMT10x_S_F3 212.72 201.94 22924000 41431000 443560 37019000 22856000 40213000 29665000 32148000 36582000 32824000 33746000 21348000 38643000 2313000 38125000 22114000 40588000 29949000 33113000 36812000 32029000 32641000 6 6 6 6 6 6 6 6 6 6 6 9344000 16526000 161450 14970000 10572000 22850000 11522000 13522000 15313000 13726000 13803000 8701400 15415000 942340 15500000 10171000 22583000 11755000 14225000 15359000 13397000 13362000 2 2 2 2 2 2 2 2 2 2 2 13580000 24905000 282110 22048000 12284000 17363000 18143000 18626000 21269000 19098000 19942000 12647000 23228000 1370700 22625000 11943000 18005000 18194000 18888000 21453000 18632000 19279000 4 4 4 4 4 4 4 4 4 4 4 5194200000 2511300000 2683000000 13901 1640 12760 72884;72885;72886;72887;72888 87959;87960;87961;87962;87963;87964 87963 2207 6 MSSTFIGNSTAIQELFKR Unmodified 2029.0303 0.030260856 1640 Q13509;Q13509-2 TUBB3 Tubulin beta-3 chain yes no 0 0 0 1 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 75.832 75.852 3 3.0927E-17 24953 20211116_3431_TMUAki_TMT10x_P_F4 146.67 0 20617000 33040000 146990 34276000 20484000 24479000 25064000 9989600 8424100 11697000 21002000 19197000 30834000 1817200 34733000 19763000 25217000 24669000 10939000 9744500 11353000 19870000 3 3 2 3 3 3 3 3 3 3 3 13681000 21288000 44646 22475000 13663000 18699000 17393000 6591000 5324300 7743900 13675000 12739000 19868000 1148400 22788000 13195000 19010000 17074000 7346900 6241000 7515600 12933000 2 2 1 2 2 2 2 2 2 2 2 6935500 11752000 102340 11801000 6821700 5780200 7670600 3398600 3099800 3952900 7326500 6458400 10966000 668780 11946000 6568500 6206300 7594800 3592200 3503500 3837700 6936800 1 1 1 1 1 1 1 1 1 1 1 1522800000 1095000000 427770000 13902 1640 12760 72889;72890;72891 87965;87966;87967;87968 87966 4 MSSYAFFVQTCR Oxidation (M) 1511.6537 0.65372002 574;817 P26583;P09429;B2RPK0 HMGB2;HMGB1;HMGB1P1 High mobility group protein B2;High mobility group protein B1;Putative high mobility group protein B1-like 1 no no 0 0 1 0 By MS/MS By MS/MS 3.56 2.69 4 4 3 1 4 9 7 54.989 54.866 2;3 1.7104E-14 18033 20211116_3430_TMUAki_TMT10x_P_F3 152.07 135.29 60201000 108410000 708900 101300000 80906000 115630000 71772000 97842000 87835000 90021000 92945000 56055000 101130000 5321100 104060000 77362000 116510000 73776000 100140000 88835000 88242000 89503000 24 24 17 24 24 24 24 24 24 24 24 29525000 50808000 413910 47677000 48090000 81851000 41053000 46563000 41549000 43257000 43610000 27491000 47398000 2800900 49371000 45940000 80483000 42025000 49024000 42321000 42383000 42005000 12 12 9 12 12 12 12 12 12 12 12 30676000 57604000 294990 53625000 32816000 33781000 30719000 51278000 46285000 46765000 49336000 28563000 53736000 2520200 54691000 31423000 36032000 31751000 51118000 46515000 45859000 47498000 12 12 8 12 12 12 12 12 12 12 12 25399000000 16095000000 9304100000 13903 817;574 12761 72892;72893;72894;72895;72896;72897;72898;72899;72900;72901;72902;72903;72904;72905;72906;72907 87969;87970;87971;87972;87973;87974;87975;87976;87977;87978;87979;87980;87981;87982;87983;87984;87985;87986;87987;87988;87989;87990;87991;87992;87993 87977 545 25 MSSYAFFVQTCR Unmodified 1495.6588 0.6588054 574;817 P26583;P09429;B2RPK0 HMGB2;HMGB1;HMGB1P1 High mobility group protein B2;High mobility group protein B1;Putative high mobility group protein B1-like 1 no no 0 0 0 0 By MS/MS By MS/MS 2.92 0.828 5 4 4 7 6 64.235 64.023 2;3 2.3172E-38 22846 20211116_3441_TMUAki_TMT10x_S_F3 279.62 58.125 93378000 160750000 1472400 159880000 115020000 135720000 116040000 58495000 44768000 66160000 105270000 86949000 150000000 8476200 162800000 110350000 138020000 115440000 63601000 50809000 64299000 99681000 14 14 5 14 14 14 14 14 14 14 14 60438000 100730000 1386200 99571000 80205000 108580000 81422000 36390000 28069000 40881000 64985000 56279000 93991000 5991600 101800000 76981000 108430000 80875000 40776000 32200000 39741000 61545000 8 8 4 8 8 8 8 8 8 8 8 32940000 60020000 86233 60305000 34816000 27147000 34616000 22105000 16698000 25279000 40289000 30670000 56006000 2484500 61005000 33374000 29587000 34568000 22825000 18609000 24558000 38135000 6 6 1 6 6 6 6 6 6 6 6 18037000000 10094000000 7943700000 13904 817;574 12761 72908;72909;72910;72911;72912;72913;72914;72915;72916;72917;72918;72919;72920 87994;87995;87996;87997;87998;87999;88000;88001;88002;88003;88004;88005;88006;88007;88008;88009;88010 88007 17 MSSYAFFVQTCREEHK Oxidation (M) 2034.8928 0.8927811 574;817 P26583;P09429;B2RPK0 HMGB2;HMGB1;HMGB1P1 High mobility group protein B2;High mobility group protein B1;Putative high mobility group protein B1-like 1 no no 0 0 1 1 By MS/MS By MS/MS 5.12 2.34 2 2 1 2 3 4 2 8 8 43.399 43.553 3;4 9.8641E-29 13040 20211116_3446_TMUAki_TMT10x_S_F7 180.7 163.41 63017000 104530000 1645700 116120000 90012000 96784000 62354000 102890000 104200000 90338000 93386000 58687000 97582000 6499700 117350000 85712000 99927000 65990000 103920000 103790000 88745000 90421000 23 23 19 23 23 23 23 23 23 23 23 24950000 40465000 688640 44180000 47071000 62673000 32153000 38067000 39897000 34117000 34894000 23236000 37772000 2590300 45085000 44801000 62154000 33633000 39827000 40072000 33483000 33816000 8 8 7 8 8 8 8 8 8 8 8 38067000 64066000 957010 71939000 42941000 34111000 30202000 64819000 64299000 56221000 58492000 35451000 59810000 3909400 72268000 40912000 37773000 32356000 64096000 63715000 55263000 56605000 15 15 12 15 15 15 15 15 15 15 15 27543000000 18674000000 8869000000 13905 817;574 12762 72921;72922;72923;72924;72925;72926;72927;72928;72929;72930;72931;72932;72933;72934;72935;72936 88011;88012;88013;88014;88015;88016;88017;88018;88019;88020;88021;88022;88023;88024;88025;88026;88027;88028;88029;88030;88031;88032;88033 88029 545 23 MSSYAFFVQTCREEHK Unmodified 2018.8979 0.89786647 574;817 P26583;P09429;B2RPK0 HMGB2;HMGB1;HMGB1P1 High mobility group protein B2;High mobility group protein B1;Putative high mobility group protein B1-like 1 no no 0 0 0 1 By MS/MS By MS/MS 6.36 2.6 2 1 2 6 6 5 50.21 50.316 3;4 3.3025E-43 14301 20211116_3436_TMUAki_TMT10x_P_F8 234.04 33.454 90987000 136720000 587740 173400000 106820000 104360000 84575000 60117000 46198000 60680000 89459000 84716000 127710000 7469000 173270000 101850000 109580000 85763000 63372000 50213000 59240000 84959000 14 14 12 14 14 14 14 14 14 14 14 53376000 75766000 92838 96964000 69810000 79896000 56198000 30640000 22152000 30723000 46173000 49692000 70777000 3897900 97167000 66546000 81339000 56662000 33641000 24878000 30002000 43798000 6 6 4 6 6 6 6 6 6 6 6 37611000 60951000 494910 76436000 37009000 24463000 28377000 29477000 24047000 29957000 43286000 35024000 56932000 3571000 76106000 35299000 28239000 29101000 29731000 25336000 29237000 41161000 8 8 8 8 8 8 8 8 8 8 8 28730000000 16264000000 12465000000 13906 817;574 12762 72937;72938;72939;72940;72941;72942;72943;72944;72945;72946;72947 88034;88035;88036;88037;88038;88039;88040;88041;88042;88043;88044;88045;88046;88047 88038 14 MSSYAFFVQTCREEHKK Oxidation (M) 2162.9877 0.98774411 574;817 P26583;P09429;B2RPK0 HMGB2;HMGB1;HMGB1P1 High mobility group protein B2;High mobility group protein B1;Putative high mobility group protein B1-like 1 no no 0 0 1 2 By MS/MS By MS/MS 4 2.92 4 4 2 2 4 9 7 40.297 40.351 4;5 1.5417E-29 11711 20211116_3429_TMUAki_TMT10x_P_F2 193.77 185.38 42493000 76645000 252680 76355000 81631000 99675000 49931000 103470000 70028000 76310000 73146000 39565000 71517000 3488100 78264000 77474000 100190000 52927000 104190000 70473000 75647000 70465000 27 27 16 27 27 27 27 27 27 27 27 23932000 41865000 224730 42283000 55440000 79324000 35909000 51538000 33701000 40512000 37338000 22285000 39066000 2400300 43660000 52677000 77901000 37377000 53472000 34511000 40020000 35906000 15 15 9 15 15 15 15 15 15 15 15 18561000 34780000 27955 34072000 26191000 20351000 14021000 51930000 36327000 35798000 35808000 17281000 32451000 1087800 34603000 24796000 22288000 15549000 50722000 35962000 35627000 34559000 12 12 7 12 12 12 12 12 12 12 12 26502000000 16101000000 10401000000 13907 817;574 12763 72948;72949;72950;72951;72952;72953;72954;72955;72956;72957;72958;72959;72960;72961;72962;72963 88048;88049;88050;88051;88052;88053;88054;88055;88056;88057;88058;88059;88060;88061;88062;88063;88064;88065;88066;88067;88068;88069;88070;88071;88072;88073;88074 88051 545 27 MSSYAFFVQTCREEHKK Unmodified 2146.9928 0.99282949 574;817 P26583;P09429;B2RPK0 HMGB2;HMGB1;HMGB1P1 High mobility group protein B2;High mobility group protein B1;Putative high mobility group protein B1-like 1 no no 0 0 0 2 By MS/MS By MS/MS 3.4 2.85 5 4 2 4 7 8 46.276 46.169 4;5 1.0895E-52 12735 20211116_3440_TMUAki_TMT10x_S_F2 263.2 34.556 87731000 149190000 893490 167950000 154870000 151980000 104220000 80205000 48164000 75880000 109980000 81690000 139280000 8721700 169770000 147260000 154200000 106630000 85039000 53645000 74287000 104180000 20 20 14 20 20 20 20 20 20 20 20 53070000 90393000 359340 99667000 110100000 126220000 77565000 49106000 29393000 45203000 65400000 49414000 84381000 5231200 101420000 104750000 125220000 78887000 53703000 33288000 44308000 61975000 11 11 7 11 11 11 11 11 11 11 11 34661000 58792000 534150 68285000 44773000 25754000 26653000 31099000 18771000 30677000 44581000 32276000 54895000 3490500 68356000 42506000 28980000 27739000 31337000 20357000 29978000 42206000 9 9 7 9 9 9 9 9 9 9 9 29099000000 20946000000 8153400000 13908 817;574 12763 72964;72965;72966;72967;72968;72969;72970;72971;72972;72973;72974;72975;72976;72977;72978 88075;88076;88077;88078;88079;88080;88081;88082;88083;88084;88085;88086;88087;88088;88089;88090;88091;88092;88093 88091 19 MSTEEIIQR Oxidation (M) 1121.5387 0.53867349 711 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 1 0 By MS/MS 2.5 0.5 1 1 2 32.979 32.855 2 0.0079847 8694 20211116_3429_TMUAki_TMT10x_P_F2 77.732 57.945 444330 597020 2615.3 682420 1252500 852400 529880 463710 476570 397310 613290 413730 557400 50595 692690 1183000 849150 573620 489100 492010 390770 587390 1 1 1 1 1 1 1 1 1 1 1 444330 597020 2615.3 682420 1252500 852400 529880 463710 476570 397310 613290 413730 557400 50595 692690 1183000 849150 573620 489100 492010 390770 587390 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 49181000 49181000 0 13909 711 12764 72979;72980 88094 88094 802 1 MSTEEIIQR Unmodified 1105.5438 0.54375887 711 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 40.009 39.832 2 0.0016503 13245 20211116_3441_TMUAki_TMT10x_S_F3 95.358 75.571 1120200 1596200 25115 2096500 1975000 1082800 1045500 966470 1038300 865960 1454000 1043200 1491300 128250 2088300 1871900 1163000 1108900 985500 1071300 849890 1389800 2 2 2 2 2 2 2 2 2 2 2 361170 490090 4413.6 754020 1362200 495990 457510 139580 167620 183220 442140 336320 458290 48077 746730 1283700 513190 502400 161210 192950 177150 418020 1 1 1 1 1 1 1 1 1 1 1 759060 1106200 20701 1342500 612740 586790 588020 826890 870630 682740 1011900 706910 1033000 80175 1341500 588150 649790 606490 824290 878360 672740 971760 1 1 1 1 1 1 1 1 1 1 1 79850000 45727000 34123000 13910 711 12764 72981;72982;72983 88095;88096 88096 2 MSTSPEAFLALR Oxidation (M) 1337.6649 0.66493664 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 0 By MS/MS By MS/MS 6 0.707 1 2 1 3 1 58.704 58.958 2 0.0028221 17106 20211116_3434_TMUAki_TMT10x_P_F6 78.61 43.458 24509000 40079000 346690 40535000 32262000 47521000 28851000 33594000 31125000 29302000 33485000 22821000 37400000 2225400 41425000 30854000 47668000 29514000 34730000 31649000 28794000 32229000 5 5 3 5 5 5 5 5 5 5 5 19550000 31296000 346690 32082000 26531000 42140000 24603000 25588000 23969000 22361000 25963000 18204000 29205000 1901300 32824000 25403000 41937000 25037000 26754000 24483000 21972000 24983000 4 4 3 4 4 4 4 4 4 4 4 4959600 8783300 0 8452800 5731100 5381300 4248100 8006300 7156200 6940800 7522800 4617100 8194500 324080 8600700 5451600 5730600 4476600 7975900 7165900 6822600 7245600 1 1 0 1 1 1 1 1 1 1 1 2527300000 1706900000 820460000 13911 1433 12765 72984;72985;72986;72987 88097;88098;88099;88100 88097 1942 4 MSTSPEAFLALR Unmodified 1321.67 0.67002202 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 67.025 67.165 2 5.4432E-28 20565 20211116_3447_TMUAki_TMT10x_S_F8 228.2 195.59 3803900 6126100 21609 5638900 4488300 7704400 5436400 4868200 3978600 4231200 4718800 3541900 5714500 345090 5817900 4328700 7657600 5419700 5073700 4137600 4158700 4529100 1 1 1 1 1 1 1 1 1 1 1 3803900 6126100 21609 5638900 4488300 7704400 5436400 4868200 3978600 4231200 4718800 3541900 5714500 345090 5817900 4328700 7657600 5419700 5073700 4137600 4158700 4529100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 986370000 986370000 0 13912 1433 12765 72988;72989;72990 88101;88102;88103 88103 3 MSVDAVEIETLRK Oxidation (M) 1505.7759 0.77594365 1428 P78347;P78347-2;P78347-4;P78347-3;P78347-5 GTF2I General transcription factor II-I yes no 0 0 1 1 By MS/MS By MS/MS 4.2 0.748 1 2 2 2 3 48.449 48.509 3 5.9252E-07 14203 20211116_3442_TMUAki_TMT10x_S_F4 118.76 102.54 15668000 24268000 120280 25926000 23350000 25671000 16991000 25552000 25784000 21284000 23960000 14588000 22651000 1424100 26328000 22230000 26165000 17839000 25858000 25781000 20963000 23169000 5 5 3 5 5 5 5 5 5 5 5 7918200 11539000 0 12768000 15659000 18218000 9849800 11735000 12326000 9835600 11650000 7371900 10772000 670320 13020000 14863000 18078000 10371000 12202000 12408000 9684200 11259000 2 2 0 2 2 2 2 2 2 2 2 7749300 12728000 120280 13158000 7690700 7452500 7141100 13817000 13457000 11448000 12310000 7216300 11879000 753750 13308000 7367700 8087000 7467800 13656000 13373000 11278000 11910000 3 3 3 3 3 3 3 3 3 3 3 1911800000 1164900000 746820000 13913 1428 12766 72991;72992;72993;72994;72995 88104;88105;88106;88107;88108 88107 1921 5 MSVDAVEIETLRK Unmodified 1489.781 0.78102903 1428 P78347;P78347-2;P78347-4;P78347-3;P78347-5 GTF2I General transcription factor II-I yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 56.566 56.676 3 1.9453E-14 17115 20211116_3431_TMUAki_TMT10x_P_F4 160.48 135.47 14961000 22383000 212980 27511000 24834000 25631000 18791000 15791000 14472000 14405000 18860000 13932000 20905000 1576100 27675000 23673000 26006000 19243000 16510000 15068000 14125000 18058000 3 3 2 3 3 3 3 3 3 3 3 11307000 16505000 148140 20555000 21216000 22758000 15887000 11650000 10467000 10398000 13728000 10529000 15416000 1213300 20717000 20218000 22799000 16226000 12368000 11002000 10207000 13142000 2 2 1 2 2 2 2 2 2 2 2 3654200 5878900 64839 6955400 3617900 2873100 2904200 4141400 4005100 4006400 5131900 3402900 5489700 362880 6958600 3455000 3207200 3017200 4142600 4066300 3918400 4915700 1 1 1 1 1 1 1 1 1 1 1 1465300000 786330000 678930000 13914 1428 12766 72996;72997;72998;72999 88109;88110;88111 88109 3 MSVIWDK Unmodified 877.43677 0.4367746 1852;1692 Q14195-2;Q14195;Q16555;Q16555-2 DPYSL3;DPYSL2 Dihydropyrimidinase-related protein 3;Dihydropyrimidinase-related protein 2 no no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 60.002 60.726 2 0.0020561 19689 20211116_3435_TMUAki_TMT10x_P_F7 130.34 48.38 11174000 16490000 0 21727000 24093000 16483000 15277000 7125400 5611100 6679400 13175000 10404000 15406000 1035000 21717000 22875000 16905000 15658000 7703500 6399700 6541800 12475000 1 1 0 1 1 1 1 1 1 1 1 11174000 16490000 0 21727000 24093000 16483000 15277000 7125400 5611100 6679400 13175000 10404000 15406000 1035000 21717000 22875000 16905000 15658000 7703500 6399700 6541800 12475000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 489000000 489000000 0 13915 1692;1852 12767 73000;73001;73002 88112;88113;88114 88112 3 MSVQPTVSLGGFEITPPVVLR Oxidation (M) 2242.2031 0.20313984 524 P06748;P06748-3;P06748-2 NPM1 Nucleophosmin yes no 0 0 1 0 By MS/MS By MS/MS 3.03 2.03 24 54 47 6 2 5 15 85 68 61.784 61.73 2;3 1.3544E-44 25890 20211116_3440_TMUAki_TMT10x_S_F2 216.34 188.92 167110000 285460000 1239000 240720000 199050000 300280000 214400000 226020000 224470000 225230000 235530000 155590000 266200000 13247000 249620000 191220000 300560000 216980000 233530000 228320000 220000000 226860000 192 193 88 193 190 192 192 190 191 192 192 97242000 162200000 758120 137390000 97336000 205880000 116960000 128590000 127800000 128890000 133120000 90540000 151260000 7335900 142940000 93809000 203780000 117950000 134660000 129730000 125870000 128250000 113 114 52 114 112 113 113 112 113 113 113 69864000 123260000 480860 103330000 101720000 94400000 97436000 97429000 96676000 96334000 102410000 65049000 114940000 5910700 106690000 97416000 96787000 99034000 98872000 98587000 94130000 98614000 79 79 36 79 78 79 79 78 78 79 79 241760000000 139590000000 102180000000 13916 524 12768 73003;73004;73005;73006;73007;73008;73009;73010;73011;73012;73013;73014;73015;73016;73017;73018;73019;73020;73021;73022;73023;73024;73025;73026;73027;73028;73029;73030;73031;73032;73033;73034;73035;73036;73037;73038;73039;73040;73041;73042;73043;73044;73045;73046;73047;73048;73049;73050;73051;73052;73053;73054;73055;73056;73057;73058;73059;73060;73061;73062;73063;73064;73065;73066;73067;73068;73069;73070;73071;73072;73073;73074;73075;73076;73077;73078;73079;73080;73081;73082;73083;73084;73085;73086;73087;73088;73089;73090;73091;73092;73093;73094;73095;73096;73097;73098;73099;73100;73101;73102;73103;73104;73105;73106;73107;73108;73109;73110;73111;73112;73113;73114;73115;73116;73117;73118;73119;73120;73121;73122;73123;73124;73125;73126;73127;73128;73129;73130;73131;73132;73133;73134;73135;73136;73137;73138;73139;73140;73141;73142;73143;73144;73145;73146;73147;73148;73149;73150;73151;73152;73153;73154;73155 88115;88116;88117;88118;88119;88120;88121;88122;88123;88124;88125;88126;88127;88128;88129;88130;88131;88132;88133;88134;88135;88136;88137;88138;88139;88140;88141;88142;88143;88144;88145;88146;88147;88148;88149;88150;88151;88152;88153;88154;88155;88156;88157;88158;88159;88160;88161;88162;88163;88164;88165;88166;88167;88168;88169;88170;88171;88172;88173;88174;88175;88176;88177;88178;88179;88180;88181;88182;88183;88184;88185;88186;88187;88188;88189;88190;88191;88192;88193;88194;88195;88196;88197;88198;88199;88200;88201;88202;88203;88204;88205;88206;88207;88208;88209;88210;88211;88212;88213;88214;88215;88216;88217;88218;88219;88220;88221;88222;88223;88224;88225;88226;88227;88228;88229;88230;88231;88232;88233;88234;88235;88236;88237;88238;88239;88240;88241;88242;88243;88244;88245;88246;88247;88248;88249;88250;88251;88252;88253;88254;88255;88256;88257;88258;88259;88260;88261;88262;88263;88264;88265;88266;88267;88268;88269;88270;88271;88272;88273;88274;88275;88276;88277;88278;88279;88280;88281;88282;88283;88284;88285;88286;88287;88288;88289;88290;88291;88292;88293;88294;88295;88296;88297;88298;88299;88300;88301;88302;88303;88304;88305;88306;88307;88308;88309;88310;88311;88312;88313;88314;88315;88316;88317;88318;88319;88320;88321;88322;88323;88324;88325;88326 88267 444 212 MSVQPTVSLGGFEITPPVVLR Unmodified 2226.2082 0.20822522 524 P06748;P06748-3;P06748-2 NPM1 Nucleophosmin yes no 0 0 0 0 By MS/MS By MS/MS 2.91 1.52 8 25 44 4 1 5 52 35 62.446 62.379 2;3 1.7452E-115 28963 20211116_3441_TMUAki_TMT10x_S_F3 354.25 293.73 120970000 190340000 1185800 189350000 129170000 149890000 149060000 75357000 62973000 85674000 131880000 112640000 177600000 8860000 192650000 124330000 153460000 147490000 80688000 70277000 83249000 125090000 97 97 43 97 97 97 97 96 97 97 97 72495000 113290000 544590 111710000 66205000 105280000 88589000 42494000 36830000 49496000 76146000 67498000 105710000 4891400 113970000 64022000 106240000 87087000 46583000 41128000 48052000 72239000 55 55 23 55 55 55 55 54 55 55 55 48478000 77045000 641210 77644000 62964000 44614000 60472000 32863000 26143000 36178000 55738000 45138000 71893000 3968500 78674000 60310000 47223000 60407000 34105000 29149000 35197000 52852000 42 42 20 42 42 42 42 42 42 42 42 165820000000 85271000000 80552000000 13917 524 12768 73156;73157;73158;73159;73160;73161;73162;73163;73164;73165;73166;73167;73168;73169;73170;73171;73172;73173;73174;73175;73176;73177;73178;73179;73180;73181;73182;73183;73184;73185;73186;73187;73188;73189;73190;73191;73192;73193;73194;73195;73196;73197;73198;73199;73200;73201;73202;73203;73204;73205;73206;73207;73208;73209;73210;73211;73212;73213;73214;73215;73216;73217;73218;73219;73220;73221;73222;73223;73224;73225;73226;73227;73228;73229;73230;73231;73232;73233;73234;73235;73236;73237;73238;73239;73240;73241;73242 88327;88328;88329;88330;88331;88332;88333;88334;88335;88336;88337;88338;88339;88340;88341;88342;88343;88344;88345;88346;88347;88348;88349;88350;88351;88352;88353;88354;88355;88356;88357;88358;88359;88360;88361;88362;88363;88364;88365;88366;88367;88368;88369;88370;88371;88372;88373;88374;88375;88376;88377;88378;88379;88380;88381;88382;88383;88384;88385;88386;88387;88388;88389;88390;88391;88392;88393;88394;88395;88396;88397;88398;88399;88400;88401;88402;88403;88404;88405;88406;88407;88408;88409;88410;88411;88412;88413;88414;88415;88416;88417;88418;88419;88420;88421;88422;88423;88424;88425;88426;88427;88428;88429;88430;88431;88432;88433;88434;88435;88436;88437;88438;88439;88440 88427 114 MTANSVLEPGNSEVSLVCEK Oxidation (M) 2179.0137 0.013684093 602 P10155;P10155-5;P10155-3;P10155-4 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes no 0 0 1 0 By MS/MS 4 0 1 1 58.799 58.705 3 2.0676E-07 18424 20211116_3442_TMUAki_TMT10x_S_F4 88.755 74.739 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13918 602 12769 73243 88441 88441 584 1 MTATGSGENSTVAEHLIAQHSAIK Unmodified 2452.2016 0.20163629 2062 Q7L5N1 COPS6 COP9 signalosome complex subunit 6 yes yes 0 0 0 0 By matching By MS/MS 7 0 2 1 1 47.465 48.004 4 2.6804E-22 15060 20211116_3446_TMUAki_TMT10x_S_F7 144.27 134.07 928720 1634000 0 2016200 853830 856090 729000 1386300 1432200 1332000 1596700 864730 1526200 75820 2012500 815550 955600 767750 1381100 1432100 1303100 1535200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 928720 1634000 0 2016200 853830 856090 729000 1386300 1432200 1332000 1596700 864730 1526200 75820 2012500 815550 955600 767750 1381100 1432100 1303100 1535200 1 1 0 1 1 1 1 1 1 1 1 361250000 234930000 126320000 13919 2062 12770 73244;73245 88442 88442 1 MTDFDRFK Oxidation (M) 1074.4804 0.48043033 1145 P50914 RPL14 60S ribosomal protein L14 yes yes 0 0 1 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 39.953 40.054 3 0.030219 9568 20211116_3444_TMUAki_TMT10x_S_F5 58.596 41.27 3196500 4988900 11275 5871900 7556100 5444900 3567800 5543500 6006500 4069300 5504500 2976200 4658500 321390 5921500 7144500 5575500 3903000 5587100 5986100 4035000 5325500 3 3 1 3 3 3 3 3 3 3 3 1522200 2242300 0 2637400 5732300 4079100 2002500 2443100 2783400 1747300 2571600 1417300 2093800 183100 2684300 5402500 4029900 2250400 2545700 2789900 1735200 2487200 1 1 0 1 1 1 1 1 1 1 1 1674300 2746600 11275 3234400 1823700 1365800 1565300 3100400 3223100 2322000 2932900 1558900 2564700 138290 3237300 1742000 1545600 1652600 3041400 3196200 2299800 2838300 2 2 1 2 2 2 2 2 2 2 2 438310000 321030000 117290000 13920 1145 12771 73246;73247;73248;73249 88443;88444;88445 88445 1511 3 MTDFDRFK Unmodified 1058.4855 0.48551571 1145 P50914 RPL14 60S ribosomal protein L14 yes yes 0 0 0 1 By MS/MS 6 0 1 1 48.643 48.799 3 0.00087769 13312 20211116_3445_TMUAki_TMT10x_S_F6 133.23 104.84 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13921 1145 12771 73250 88446 88446 1 MTDQEAIQDLWQWR Oxidation (M) 1834.8308 0.83083277 524 P06748;P06748-2 NPM1 Nucleophosmin yes no 0 0 1 0 By MS/MS By MS/MS 3.6 1.53 2 3 5 4 3 3 9 11 77.095 77.056 2;3 5.6591E-29 26559 20211116_3429_TMUAki_TMT10x_P_F2 201 168.48 101760000 165980000 400270 157360000 124580000 149130000 142800000 74057000 68722000 87096000 122850000 94741000 154850000 7827500 161020000 119850000 150750000 141600000 79475000 75075000 84525000 116840000 19 19 5 19 19 19 19 19 19 19 19 63185000 99183000 15187 95402000 75226000 111470000 90708000 45154000 42406000 54438000 73985000 58826000 92534000 4734000 97833000 72476000 111080000 89704000 49534000 46375000 52785000 70393000 11 11 2 11 11 11 11 11 11 11 11 38575000 66801000 385090 61963000 49349000 37660000 52088000 28903000 26316000 32658000 48868000 35915000 62314000 3093500 63191000 47370000 39668000 51894000 29941000 28700000 31741000 46443000 8 8 3 8 8 8 8 8 8 8 8 18058000000 10349000000 7708300000 13922 524 12772 73251;73252;73253;73254;73255;73256;73257;73258;73259;73260;73261;73262;73263;73264;73265;73266;73267;73268;73269;73270 88447;88448;88449;88450;88451;88452;88453;88454;88455;88456;88457;88458;88459;88460;88461;88462;88463;88464;88465;88466;88467;88468 88448 445 22 MTDQEAIQDLWQWR Unmodified 1818.8359 0.83591814 524 P06748;P06748-2 NPM1 Nucleophosmin yes no 0 0 0 0 By MS/MS By MS/MS 4.72 1.41 1 3 4 4 4 2 10 8 78.814 78.793 2;3 5.3272E-134 26454 20211116_3433_TMUAki_TMT10x_P_F5 399.2 348.9 97791000 143850000 788790 166250000 117360000 84484000 144400000 33761000 26967000 39915000 99914000 91051000 134310000 8175500 166800000 113200000 89971000 141420000 37070000 35162000 38729000 94125000 17 17 8 17 17 17 17 17 17 17 17 48384000 69587000 506060 80215000 65870000 57287000 82449000 18963000 14736000 21023000 50367000 45050000 64972000 4287500 80739000 63578000 58913000 80669000 21276000 19218000 20447000 47484000 9 9 5 9 9 9 9 9 9 9 9 49407000 74258000 282720 86034000 51493000 27197000 61952000 14797000 12232000 18892000 49547000 46001000 69335000 3888000 86058000 49621000 31057000 60754000 15793000 15943000 18282000 46641000 8 8 3 8 8 8 8 8 8 8 8 25451000000 15698000000 9753500000 13923 524 12772 73271;73272;73273;73274;73275;73276;73277;73278;73279;73280;73281;73282;73283;73284;73285;73286;73287;73288 88469;88470;88471;88472;88473;88474;88475;88476;88477;88478;88479;88480;88481;88482;88483;88484;88485;88486;88487 88474 19 MTDQEAIQDLWQWRK Oxidation (M) 1962.9258 0.92579578 524 P06748;P06748-2 NPM1 Nucleophosmin yes no 0 0 1 1 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 67.535 67.618 3 4.0556E-07 20695 20211116_3434_TMUAki_TMT10x_P_F6 116.58 104.61 36646000 59503000 677240 54396000 56332000 43223000 41997000 30250000 25794000 31225000 44942000 34125000 55503000 3812200 55687000 53686000 44430000 42847000 31440000 27629000 30456000 42761000 6 6 5 6 6 6 6 6 6 6 6 10901000 17185000 206500 15447000 13506000 20276000 15617000 8753300 7053200 8843500 13529000 10152000 16029000 1132700 15953000 13015000 20099000 15465000 9484000 7780000 8633300 12850000 2 2 2 2 2 2 2 2 2 2 2 25744000 42318000 470740 38949000 42827000 22947000 26381000 21497000 18740000 22382000 31413000 23973000 39475000 2679500 39733000 40670000 24331000 27382000 21956000 19849000 21823000 29911000 4 4 3 4 4 4 4 4 4 4 4 2625500000 964020000 1661500000 13924 524 12773 73289;73290;73291 88488;88489;88490;88491;88492;88493 88488 445 6 MTDQEAIQDLWQWRK Unmodified 1946.9309 0.93088116 524 P06748;P06748-2 NPM1 Nucleophosmin yes no 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 73.112 73.338 3 1.7558E-24 25111 20211116_3435_TMUAki_TMT10x_P_F7 196.64 163.64 14346000 22797000 206790 25169000 16182000 14769000 20585000 6933700 5478800 7448500 16276000 13359000 21281000 1380200 25353000 15638000 15511000 20182000 7460500 6617900 7253400 15366000 3 3 2 3 3 3 3 3 3 3 3 6833800 10512000 37967 11547000 8628300 9330100 11613000 3205700 2221100 3296100 7790600 6363300 9812600 627090 11674000 8350600 9504000 11332000 3571200 2868100 3215400 7342900 1 1 1 1 1 1 1 1 1 1 1 7512300 12285000 168830 13621000 7554000 5439000 8972500 3728000 3257700 4152400 8485300 6995700 11468000 753090 13679000 7287200 6007200 8850100 3889400 3749700 4038000 8023600 2 2 1 2 2 2 2 2 2 2 2 1281400000 768390000 513040000 13925 524 12773 73292;73293 88494 88494 1 MTDSFTEQADQVTAEVGK Oxidation (M) 1971.8732 0.87315109 573 P09417 QDPR Dihydropteridine reductase yes yes 0 0 1 0 By MS/MS By MS/MS 2.5 0.957 1 2 2 1 3 3 60.062 59.859 3 3.8902E-08 21091 20211116_3441_TMUAki_TMT10x_S_F3 104.76 93.324 16734000 27388000 178040 25712000 25034000 41099000 23366000 25719000 25494000 24721000 23365000 15582000 25550000 1596800 26579000 23968000 40574000 23854000 26895000 25767000 24185000 22605000 8 8 5 8 8 8 8 8 8 8 8 15340000 24734000 144580 23403000 23535000 39616000 21961000 23164000 23238000 22587000 21238000 14283000 23074000 1448500 24211000 22531000 38988000 22398000 24365000 23514000 22084000 20550000 7 7 4 7 7 7 7 7 7 7 7 1393800 2654900 33459 2309000 1498400 1482500 1404400 2554800 2256100 2133900 2126300 1298100 2476000 148210 2367600 1436400 1585400 1455800 2530800 2253400 2101400 2055200 1 1 1 1 1 1 1 1 1 1 1 3383700000 2693300000 690500000 13926 573 12774 73294;73295;73296;73297;73298;73299 88495;88496;88497;88498;88499;88500;88501;88502;88503;88504 88504 543 10 MTDSFTEQADQVTAEVGK Unmodified 1955.8782 0.87823647 573 P09417 QDPR Dihydropteridine reductase yes yes 0 0 0 0 By MS/MS By MS/MS 3.25 0.433 3 1 3 1 67.178 66.956 3 1.972E-08 21362 20211116_3431_TMUAki_TMT10x_P_F4 113.14 101.01 23434000 39763000 294430 36305000 28273000 34923000 29774000 24281000 21938000 24915000 28787000 21817000 37090000 1733000 37260000 27129000 35423000 29880000 25244000 22904000 24308000 27558000 5 5 2 5 5 5 5 5 5 5 5 12099000 18288000 294430 17799000 13626000 23370000 15776000 12844000 11782000 12732000 14519000 11267000 17062000 1236300 18275000 13133000 23228000 15766000 13587000 12258000 12439000 13921000 3 3 2 3 3 3 3 3 3 3 3 11335000 21475000 0 18506000 14647000 11553000 13998000 11437000 10156000 12183000 14268000 10550000 20027000 496700 18985000 13996000 12195000 14114000 11656000 10646000 11868000 13637000 2 2 0 2 2 2 2 2 2 2 2 2109700000 1514100000 595640000 13927 573 12774 73300;73301;73302;73303 88505;88506;88507;88508;88509;88510 88507 6 MTEWETAAPAVAETPDIK Acetyl (Protein N-term);Oxidation (M) 2016.935 0.93502307 1055 P46782 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes yes 1 0 1 0 By MS/MS 2 0 1 1 73.239 73.149 3 1.0193E-05 23700 20211116_3440_TMUAki_TMT10x_S_F2 54.368 42.203 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13928 1055 12775 73304 88511 88511 1365 1 MTGEEKEFETIERDER Oxidation (M) 2013.8949 0.89494917 1558 Q10570 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 0 0 1 2 By MS/MS By MS/MS 1 0 2 1 1 38.196 38.153 4 1.9076E-05 9264 20211116_3428_TMUAki_TMT10x_P_F1 94.922 85 580460 1140300 646.84 1028700 1259200 2012000 913160 3357300 2577700 2032300 1802400 540400 1063600 49585 1072000 1198200 2019200 995880 3305900 2522000 2039500 1762700 2 2 1 2 2 2 2 2 2 2 2 264080 528580 0 444380 801680 1504900 636820 1464500 1158600 949910 848110 245820 492900 20775 475140 763980 1466800 670730 1475700 1144800 948930 827750 1 1 0 1 1 1 1 1 1 1 1 316370 611700 646.84 584280 457550 507060 276340 1892800 1419100 1082400 954300 294580 570680 28810 596840 434200 552460 325150 1830300 1377200 1090600 934970 1 1 1 1 1 1 1 1 1 1 1 133570000 91430000 42140000 13929 1558 12776 73305;73306 88512;88513 88512 2100 2 MTGSEFDFEEMKR Oxidation (M) 1621.6752 0.67524333 1133 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 1 1 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 49.07 49.158 3 0.0033306 14743 20211116_3442_TMUAki_TMT10x_S_F4 62.287 42.71 10484000 20144000 221390 18918000 21708000 24154000 16769000 15185000 12439000 12618000 16777000 9763100 18792000 1232700 19465000 20704000 24082000 17133000 15815000 12998000 12429000 16050000 3 3 3 3 3 3 3 3 3 3 3 7061900 13130000 215710 12395000 18274000 20791000 14026000 10218000 8053900 8170000 11185000 6576900 12249000 943530 12822000 17428000 20425000 14265000 10861000 8566000 8063700 10693000 2 2 2 2 2 2 2 2 2 2 2 3421900 7013700 5679.8 6523900 3434500 3362600 2742100 4967000 4384700 4448000 5592000 3186200 6542700 289170 6642800 3276100 3656600 2868500 4953600 4431600 4365500 5357100 1 1 1 1 1 1 1 1 1 1 1 1117400000 709610000 407830000 13930 1133 12777 73307;73308;73309 88514;88515;88516 88516 1495;1496 3 MTHNLLLNYGLYR Oxidation (M) 1622.8239 0.8238969 2362;1645 Q13547;Q92769;Q92769-3 HDAC1;HDAC2 Histone deacetylase 1;Histone deacetylase 2 no no 0 0 1 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 52.437 52.126 3 0.00015768 18046 20211116_3441_TMUAki_TMT10x_S_F3 84.169 70.969 3692800 6218900 52156 6415900 5333100 6104400 4496800 4905100 4965800 4320500 5204400 3438800 5803700 377740 6526700 5095800 6211000 4619500 5030200 5039800 4243700 5013100 2 2 2 2 2 2 2 2 2 2 2 2333100 3905900 29094 3958800 3819700 4802800 3155300 2957900 3089300 2694100 3247700 2172600 3644800 241370 4047500 3647600 4799200 3233300 3092600 3151400 2642000 3128000 1 1 1 1 1 1 1 1 1 1 1 1359700 2313000 23061 2457200 1513400 1301600 1341400 1947200 1876500 1626500 1956700 1266200 2158800 136370 2479300 1448200 1411700 1386200 1937600 1888400 1601700 1885100 1 1 1 1 1 1 1 1 1 1 1 416790000 235870000 180920000 13931 1645;2362 12778 73310;73311 88517;88518 88518 2213 2 MTHNLLLNYGLYRK Oxidation (M) 1750.9189 0.91885991 2362;1645 Q13547;Q92769;Q92769-3 HDAC1;HDAC2 Histone deacetylase 1;Histone deacetylase 2 no no 0 0 1 1 By MS/MS 4 0 1 1 47.437 47.574 4 8.6204E-07 13425 20211116_3431_TMUAki_TMT10x_P_F4 117.2 100.48 1617400 2469400 9311.7 3166400 3535500 4127900 2458100 2524300 2114500 2034000 2641700 1506000 2306800 169640 3195400 3363500 4109900 2539100 2632800 2184900 2006700 2532100 1 1 1 1 1 1 1 1 1 1 1 1617400 2469400 9311.7 3166400 3535500 4127900 2458100 2524300 2114500 2034000 2641700 1506000 2306800 169640 3195400 3363500 4109900 2539100 2632800 2184900 2006700 2532100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 315550000 315550000 0 13932 1645;2362 12779 73312 88519 88519 2213 1 MTIGHLIECLQGK Unmodified 1498.7636 0.76360482 881 P30876 POLR2B DNA-directed RNA polymerase II subunit RPB2 yes yes 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 73.521 73.431 3 1.7212E-06 23843 20211116_3440_TMUAki_TMT10x_S_F2 113.24 92.777 1833900 3346600 65207 2989700 2389800 1990900 2193200 1405000 1236400 1537000 2026000 1708000 3121400 220600 3060300 2290500 2076600 2205300 1462000 1327700 1495700 1929900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1833900 3346600 65207 2989700 2389800 1990900 2193200 1405000 1236400 1537000 2026000 1708000 3121400 220600 3060300 2290500 2076600 2205300 1462000 1327700 1495700 1929900 1 1 1 1 1 1 1 1 1 1 1 271790000 0 271790000 13933 881 12780 73313;73314 88520;88521 88520 2 MTISNMEADMNR 2 Oxidation (M) 1443.5792 0.57923445 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4;Q7Z4S6-6 KIF21A Kinesin-like protein KIF21A yes no 0 0 2 0 By MS/MS 3 0 1 1 32.873 32.846 3 0.047652 9142 20211116_3430_TMUAki_TMT10x_P_F3 46.101 28.237 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13934 2082 12781 73315 88522 88522 2587;2588 1 MTISQQEFGR Oxidation (M) 1211.5605 0.56047157 1232 P55036 PSMD4 26S proteasome non-ATPase regulatory subunit 4 yes yes 0 0 1 0 By MS/MS By MS/MS 5 1 1 1 1 1 34.996 35.092 2 0.00032044 8426 20211116_3431_TMUAki_TMT10x_P_F4 117.3 90.298 1042900 1524900 5357.5 1863300 2589600 1990000 1193500 985770 1201600 948090 1324300 971120 1424200 113120 1878900 2448300 1996900 1283900 1051800 1226400 927500 1273700 2 2 2 2 2 2 2 2 2 2 2 960050 1395700 4202.8 1693900 2533200 1953000 1129400 927720 1143700 895970 1228800 893930 1303400 105540 1710800 2393900 1950600 1219400 994040 1166000 876360 1182800 1 1 1 1 1 1 1 1 1 1 1 82893 129260 1154.8 169400 56409 36992 64096 58047 57841 52116 95484 77190 120760 7577.7 168000 54351 46326 64420 57778 60452 51144 90945 1 1 1 1 1 1 1 1 1 1 1 76632000 74661000 1970700 13935 1232 12782 73316;73317 88523;88524 88523 1655 2 MTLADIER Oxidation (M) 963.46953 0.46953129 3141 Q9UJS0;Q9UJS0-2 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes no 0 0 1 0 By matching By MS/MS 2.33 0.471 2 1 1 2 37.992 37.851 2 0.068725 9119 20211116_3440_TMUAki_TMT10x_S_F2 59.368 23.324 813680 1244200 4181.6 1508000 775020 668950 692270 1146500 1161900 903140 1219800 757650 1162000 70816 1507200 741300 743960 721060 1134300 1163500 892080 1174900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 813680 1244200 4181.6 1508000 775020 668950 692270 1146500 1161900 903140 1219800 757650 1162000 70816 1507200 741300 743960 721060 1134300 1163500 892080 1174900 2 2 2 2 2 2 2 2 2 2 2 68366000 29743000 38623000 13936 3141 12783 73318;73319;73320 88525 88525 3157 1 MTLDTLSIYETPSMGLLDKK 2 Oxidation (M) 2287.1327 0.1327366 1249 P55884;P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 0 0 2 1 By MS/MS By MS/MS 6.67 0.471 2 4 4 2 69.273 69.524 3;4 7.8831E-13 21462 20211116_3434_TMUAki_TMT10x_P_F6 123.55 113.45 27739000 48650000 248590 40058000 32664000 58712000 35119000 46942000 48228000 42046000 41409000 25827000 45364000 2356300 41751000 31381000 58397000 35900000 48175000 48248000 41266000 40157000 8 8 4 8 8 8 8 8 8 8 8 20237000 34873000 188640 28559000 22502000 48894000 26640000 33293000 33983000 30071000 29423000 18842000 32516000 1641200 29885000 21675000 48205000 27033000 34541000 34089000 29501000 28524000 6 6 2 6 6 6 6 6 6 6 6 7501400 13777000 59945 11498000 10163000 9818200 8479200 13649000 14245000 11975000 11986000 6985000 12847000 715060 11866000 9705700 10192000 8867300 13634000 14159000 11765000 11632000 2 2 2 2 2 2 2 2 2 2 2 5011000000 3127400000 1883600000 13937 1249 12784 73321;73322;73323;73324;73325;73326 88526;88527;88528;88529;88530;88531;88532;88533 88526 1696;1697 8 MTLDTLSIYETPSMGLLDKK Oxidation (M) 2271.1378 0.13782197 1249 P55884;P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 0 0 1 1 By MS/MS By MS/MS 7.5 0.5 3 3 2 4 76.089 76.122 3;4 1.7292E-09 24285 20211116_3447_TMUAki_TMT10x_S_F8 117.29 107.54 41575000 69875000 348770 63907000 47881000 53900000 49580000 29729000 25319000 34485000 46834000 38712000 65178000 3818400 65467000 45972000 54984000 49451000 31588000 27583000 33484000 44513000 10 10 9 10 10 10 10 10 10 10 10 15179000 24807000 208840 22358000 14090000 27098000 17723000 11875000 10278000 13101000 16935000 14135000 23138000 1437800 23053000 13614000 26971000 17556000 12879000 11018000 12745000 16130000 3 3 3 3 3 3 3 3 3 3 3 26395000 45068000 139930 41549000 33792000 26802000 31857000 17853000 15041000 21383000 29899000 24577000 42040000 2380600 42415000 32358000 28013000 31895000 18709000 16565000 20739000 28383000 7 7 6 7 7 7 7 7 7 7 7 5046900000 1080200000 3966700000 13938 1249 12784 73327;73328;73329;73330;73331;73332 88534;88535;88536;88537;88538;88539;88540;88541;88542;88543;88544 88544 1696;1697 11 MTLVASEDYGDTLAAIQGLLK Oxidation (M) 2224.1297 0.12970013 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 1 0 By MS/MS By MS/MS 7.6 0.49 2 3 2 3 80.802 80.821 3 5.3531E-20 28594 20211116_3446_TMUAki_TMT10x_S_F7 157.54 140.66 7474000 12592000 101400 10021000 8601300 12910000 9555800 9883000 10533000 10150000 10396000 6959300 11740000 671500 10448000 8273700 12905000 9673200 10209000 10668000 9902100 10033000 4 4 3 4 4 4 4 4 4 4 4 3330900 5558000 63000 4356000 3277200 7053400 3863300 4290600 4339700 4316300 4293300 3101900 5181700 334120 4569100 3160900 6957100 3902800 4502600 4392400 4214400 4143000 2 2 2 2 2 2 2 2 2 2 2 4143100 7034500 38396 5665300 5324100 5856300 5692500 5592400 6193000 5833900 6103100 3857500 6558800 337380 5879100 5112700 5948300 5770400 5706500 6275200 5687700 5890200 2 2 1 2 2 2 2 2 2 2 2 1472300000 1127400000 344890000 13939 1663 12785 73333;73334;73335;73336;73337 88545;88546;88547;88548;88549;88550 88547 2231 6 MTNGFSGADLTEICQR Oxidation (M) 1814.7927 0.7927327 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 1 0 By MS/MS By MS/MS 4.11 0.737 2 4 3 4 5 52.454 52.606 2;3 1.1342E-28 15865 20211116_3442_TMUAki_TMT10x_S_F4 190.57 156.85 17273000 30091000 676920 33976000 29537000 33790000 20615000 31410000 30350000 26484000 28326000 16088000 28093000 2216100 34384000 28137000 34381000 21678000 31909000 30378000 26068000 27387000 8 8 5 8 8 8 8 8 8 8 8 9069400 15297000 356430 18060000 21540000 24944000 13731000 15625000 14935000 12960000 13976000 8447100 14284000 1258700 18332000 20479000 24777000 14374000 16277000 15107000 12767000 13512000 4 4 3 4 4 4 4 4 4 4 4 8203400 14794000 320490 15916000 7996900 8846500 6883700 15785000 15414000 13524000 14350000 7640400 13809000 957430 16052000 7658000 9604200 7304700 15632000 15270000 13301000 13876000 4 4 2 4 4 4 4 4 4 4 4 3632000000 1926100000 1705900000 13940 1235 12786 73338;73339;73340;73341;73342;73343;73344;73345;73346 88551;88552;88553;88554;88555;88556;88557;88558;88559;88560 88558 1674 10 MTNGFSGADLTEICQR Unmodified 1798.7978 0.79781808 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 By MS/MS By MS/MS 5.25 0.661 1 4 3 3 5 59.547 59.617 2;3 2.765E-52 17474 20211116_3444_TMUAki_TMT10x_S_F5 263.83 197.64 32608000 57340000 603090 52832000 41457000 42631000 36415000 46896000 42711000 40723000 45115000 30365000 53487000 3336400 54064000 39658000 44155000 37396000 47281000 43261000 40027000 43446000 9 9 6 9 9 9 9 9 9 9 9 7643000 13032000 177420 12754000 10326000 16118000 10437000 10644000 9592900 9547400 10555000 7117500 12159000 811440 13081000 9912900 16089000 10555000 11065000 9830300 9369700 10153000 3 3 2 3 3 3 3 3 3 3 3 24965000 44307000 425670 40078000 31132000 26513000 25978000 36252000 33118000 31176000 34560000 23248000 41328000 2524900 40982000 29745000 28066000 26841000 36216000 33431000 30657000 33294000 6 6 4 6 6 6 6 6 6 6 6 3043600000 1305200000 1738400000 13941 1235 12786 73347;73348;73349;73350;73351;73352;73353;73354 88561;88562;88563;88564;88565;88566;88567;88568 88564 8 MTNPAIQNDFSYYRR Oxidation (M) 1890.8683 0.86828091 2958 Q9NUQ9;Q9NUQ9-2 FAM49B Protein FAM49B yes no 0 0 1 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 41.612 41.88 3 1.9246E-14 10786 20211116_3436_TMUAki_TMT10x_P_F8 150.05 124.73 2137500 3491200 21363 3868900 4632800 5173400 3355900 5312700 5334700 4178800 4352700 1990300 3259000 221030 3939700 4410600 5193000 3532000 5360600 5305700 4127900 4229300 5 5 3 5 5 5 5 5 5 5 5 1400000 2201100 11711 2433600 3840300 4394000 2523500 3509900 3344800 2758100 2885600 1303600 2054700 154260 2495500 3649400 4335500 2654000 3590700 3350500 2724700 2797900 3 3 2 3 3 3 3 3 3 3 3 737470 1290100 9652.2 1435300 792550 779400 832340 1802800 1990000 1420600 1467000 686690 1204300 66773 1444200 761250 857460 878040 1769900 1955200 1403200 1431400 2 2 1 2 2 2 2 2 2 2 2 311430000 220330000 91101000 13942 2958 12787 73355;73356;73357 88569;88570;88571;88572;88573 88570 3044 5 MTPSYEIR Unmodified 995.47462 0.47461667 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 38.817 38.921 2 0.0030327 10104 20211116_3442_TMUAki_TMT10x_S_F4 102.3 69.826 1680400 2695900 14377 3304000 4286100 2955800 2095800 1798200 1796800 1549300 2357300 1564600 2517800 184180 3322400 4055200 3006600 2231100 1879300 1860900 1523400 2256700 2 2 1 2 2 2 2 2 2 2 2 1217300 1968300 14377 2323700 3819500 2668700 1647400 1468000 1437700 1233800 1708100 1133500 1837900 150770 2350600 3608600 2670400 1778100 1546200 1481400 1214600 1639400 1 1 1 1 1 1 1 1 1 1 1 463070 727600 0 980250 466600 287080 448350 330210 359030 315540 649230 431120 679880 33410 971810 446610 336180 452970 333120 379460 308780 617300 1 1 0 1 1 1 1 1 1 1 1 117200000 96702000 20498000 13943 1546 12788 73358;73359 88574;88575 88575 2 MTPSYEIR Oxidation (M) 1011.4695 0.46953129 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 1 0 By MS/MS 3.5 0.5 1 1 2 33.655 33.416 2 0.040765 8081 20211116_3442_TMUAki_TMT10x_S_F4 66.799 27.581 430190 680480 17663 859360 403090 404020 427110 528960 660350 446400 698450 400680 635630 51748 857250 388180 442490 439200 529030 662940 439370 672590 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 430190 680480 17663 859360 403090 404020 427110 528960 660350 446400 698450 400680 635630 51748 857250 388180 442490 439200 529030 662940 439370 672590 1 1 1 1 1 1 1 1 1 1 1 17947000 0 17947000 13944 1546 12788 73360;73361 88576;88577 88577 2081 2 MTQNPNYYNLQGISHR Oxidation (M) 1950.9006 0.90064367 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 1 0 By MS/MS By MS/MS 7.86 0.35 1 6 4 3 37.3 37.689 3 1.6253E-35 8526 20211116_3436_TMUAki_TMT10x_P_F8 200.77 184.51 533190 896160 9887.1 1068500 1171900 1247100 711180 747020 896680 681450 800850 496500 836860 53081 1080500 1112400 1248200 751210 782790 900700 668240 775520 10 10 6 10 10 10 10 10 10 10 10 453970 739810 9024.4 896290 1104500 1188500 659150 607950 744650 561300 681100 422730 690900 48149 907680 1048200 1179700 694540 646020 751560 550120 659000 8 8 5 8 8 8 8 8 8 8 8 79217 156350 862.67 172160 67329 58604 52031 139070 152030 120150 119750 73765 145950 4931.7 172820 64226 68515 56673 136770 149140 118130 116520 2 2 1 2 2 2 2 2 2 2 2 253170000 167000000 86175000 13945 352 12789 73362;73363;73364;73365;73366;73367;73368 88578;88579;88580;88581;88582;88583;88584;88585;88586;88587;88588;88589 88582 267 12 MTQNPNYYNLQGISHR Unmodified 1934.9057 0.90572904 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 43.829 43.729 3 2.2844E-30 11583 20211116_3436_TMUAki_TMT10x_P_F8 176.42 159.67 838140 1532000 23416 1782500 671730 637230 566630 1310700 1417900 1211400 1307800 780560 1430400 87908 1783600 642800 734940 606610 1295700 1401300 1187200 1265000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 838140 1532000 23416 1782500 671730 637230 566630 1310700 1417900 1211400 1307800 780560 1430400 87908 1783600 642800 734940 606610 1295700 1401300 1187200 1265000 2 2 1 2 2 2 2 2 2 2 2 213690000 0 213690000 13946 352 12789 73369;73370;73371 88590;88591;88592 88590 3 MTVDESGQLISCSMDDTVR 2 Oxidation (M) 2174.913 0.91298377 307 O75083;O75083-3 WDR1 WD repeat-containing protein 1 yes no 0 0 2 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 46.266 46.092 3 1.6156E-09 14030 20211116_3429_TMUAki_TMT10x_P_F2 120.52 105.59 1616600 2685500 1387.3 3223600 3516800 4209200 2639200 2717600 2869600 2421100 2718100 1504900 2507900 122970 3265300 3347600 4193800 2730100 2829500 2903800 2376800 2626800 4 4 1 4 4 4 4 4 4 4 4 1318000 2036100 0 2499200 3238300 3887700 2378700 2095200 2137400 1890200 2066500 1226800 1901600 97204 2537600 3080900 3834600 2450300 2214500 2182500 1854500 1995600 3 3 0 3 3 3 3 3 3 3 3 298640 649420 1387.3 724420 278470 321520 260470 622440 732200 530860 651650 278070 606260 25770 727710 266640 359160 279750 614920 721390 522230 631120 1 1 1 1 1 1 1 1 1 1 1 763840000 494250000 269580000 13947 307 12790 73372;73373;73374;73375;73376 88593;88594;88595;88596;88597 88595 232;233 5 MVADHLQFLHAECHNIIR Oxidation (M) 2219.0728 0.072811148 1656 Q13617;Q13617-2 CUL2 Cullin-2 yes no 0 0 1 0 By MS/MS 7 0 1 1 44.051 44.575 5 0.0018376 13634 20211116_3446_TMUAki_TMT10x_S_F7 60.949 50.161 1393500 2126400 78914 2767100 1298900 1304800 1249700 1965800 1783300 1694000 2086400 1298100 1986500 187750 2755800 1249000 1434300 1286700 1957200 1801600 1665700 2003200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1393500 2126400 78914 2767100 1298900 1304800 1249700 1965800 1783300 1694000 2086400 1298100 1986500 187750 2755800 1249000 1434300 1286700 1957200 1801600 1665700 2003200 1 1 1 1 1 1 1 1 1 1 1 179220000 0 179220000 13948 1656 12791 73377 88598 88598 2220 1 MVDVVEKEDVNEAIR Unmodified 1744.8665 0.86654957 913 P33993;P33993-3 MCM7 DNA replication licensing factor MCM7 yes no 0 0 0 1 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 53.709 53.548 3 3.1244E-14 17507 20211116_3430_TMUAki_TMT10x_P_F3 148.44 109.44 22646000 35312000 24678 35849000 37580000 41148000 27206000 20079000 18668000 20579000 27130000 21084000 32952000 1913600 36613000 35762000 41119000 27874000 21493000 19665000 20078000 25909000 6 6 2 6 6 6 6 6 6 6 6 19297000 29484000 24678 29633000 34430000 38328000 24294000 16998000 15695000 17327000 22710000 17967000 27512000 1681300 30350000 32750000 38030000 24906000 18368000 16592000 16909000 21690000 5 5 2 5 5 5 5 5 5 5 5 3348400 5828000 0 6216400 3150200 2820200 2912500 3081700 2973200 3252200 4420100 3117300 5439600 232310 6263500 3011800 3088300 2968500 3125100 3073400 3169200 4219200 1 1 0 1 1 1 1 1 1 1 1 1430700000 1192900000 237780000 13949 913 12792 73378;73379;73380;73381;73382;73383 88599;88600;88601;88602;88603;88604;88605;88606 88601 8 MVDVVEKEDVNEAIR Oxidation (M) 1760.8615 0.86146419 913 P33993;P33993-3 MCM7 DNA replication licensing factor MCM7 yes no 0 0 1 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 46.133 46.126 3 3.0197E-19 15498 20211116_3441_TMUAki_TMT10x_S_F3 165.93 147.25 11870000 20129000 53645 18848000 21607000 25952000 13833000 21733000 24196000 18131000 18468000 11052000 18777000 1131400 19425000 20523000 25905000 14759000 22202000 23959000 17856000 17993000 6 6 4 6 6 6 6 6 6 6 6 7764600 13004000 37065 12186000 17454000 21394000 10301000 13761000 15508000 11423000 11850000 7229700 12131000 788610 12628000 16556000 21056000 10984000 14307000 15419000 11252000 11544000 3 3 2 3 3 3 3 3 3 3 3 4105400 7124400 16580 6661800 4153100 4557500 3531900 7971800 8687900 6708100 6618300 3822500 6646100 342770 6797400 3966700 4849400 3774700 7895100 8539400 6603500 6448500 3 3 2 3 3 3 3 3 3 3 3 1859800000 1198900000 660970000 13950 913 12792 73384;73385;73386;73387 88607;88608;88609;88610;88611;88612 88610 1140 6 MVEDELALFDK Acetyl (Protein N-term) 1350.6377 0.63771883 2858 Q9HBM1 SPC25 Kinetochore protein Spc25 yes yes 1 0 0 0 By MS/MS By matching 1.33 0.471 2 1 1 2 81.842 81.83 2 5.3978E-06 27038 20211116_3428_TMUAki_TMT10x_P_F1 85.256 68.682 2561800 3632900 0 3818800 1994300 2480400 2382300 950400 851630 1195800 2410900 2385000 3390600 170790 3862600 1919800 2575100 2348800 1050900 988690 1157800 2277400 1 1 0 1 1 1 1 1 1 1 1 2561800 3632900 0 3818800 1994300 2480400 2382300 950400 851630 1195800 2410900 2385000 3390600 170790 3862600 1919800 2575100 2348800 1050900 988690 1157800 2277400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 689910000 443420000 246490000 13951 2858 12793 73388;73389;73390 88613 88613 1 MVEGFFDR Oxidation (M) 1015.4433 0.44331654 463 P00367;P49448 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 49.482 49.452 2 0.003065 14484 20211116_3442_TMUAki_TMT10x_S_F4 113.5 103.09 11027000 18009000 0 20272000 17591000 18337000 12953000 21871000 19855000 18651000 16027000 10267000 16813000 912590 20492000 16745000 18879000 13595000 21962000 19761000 18348000 15579000 4 4 0 4 4 4 4 4 4 4 4 5800400 8933300 0 10233000 12415000 13481000 8260400 11659000 10131000 9946300 8108000 5400300 8340600 516280 10396000 11796000 13492000 8654000 11895000 10153000 9784600 7884200 2 2 0 2 2 2 2 2 2 2 2 5226700 9075600 0 10039000 5176000 4856000 4692700 10212000 9724100 8704900 7918900 4866300 8472100 396310 10096000 4948400 5387100 4941000 10067000 9608300 8563700 7695000 2 2 0 2 2 2 2 2 2 2 2 1249600000 735430000 514160000 13952 463 12794 73391;73392;73393;73394 88614;88615;88616;88617 88617 347 4 MVEGFFDR Unmodified 999.4484 0.44840192 463 P00367;P49448 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 59.42 59.466 2 0.058433 18729 20211116_3442_TMUAki_TMT10x_S_F4 57.047 45.326 97648000 164310000 0 156880000 125170000 92584000 105190000 93436000 53619000 88868000 115120000 90914000 153290000 7765800 159610000 119470000 98303000 106140000 94820000 58987000 86981000 109150000 4 4 0 4 4 4 4 4 4 4 4 16752000 27224000 0 25810000 20682000 30378000 20349000 13749000 9250400 14319000 17527000 15595000 25398000 1154300 26498000 19804000 30292000 20315000 14835000 10190000 13962000 16651000 1 1 0 1 1 1 1 1 1 1 1 80896000 137090000 0 131070000 104490000 62206000 84837000 79687000 44369000 74548000 97595000 75319000 127900000 6611600 133110000 99666000 68012000 85829000 79985000 48797000 73019000 92499000 3 3 0 3 3 3 3 3 3 3 3 1209200000 560690000 648480000 13953 463 12794 73395;73396;73397 88618 88618 1 MVEIGSR Unmodified 790.40072 0.40072345 705 P17480;P17480-2 UBTF Nucleolar transcription factor 1 yes no 0 0 0 0 By MS/MS 4 0 1 1 33.681 33.753 2 0.10287 8470 20211116_3442_TMUAki_TMT10x_S_F4 53.754 14.948 132560 216630 0 237740 152640 123210 164690 111500 98920 107940 183720 123410 202220 9821.7 239330 146560 132320 164390 113850 106520 105570 174600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 132560 216630 0 237740 152640 123210 164690 111500 98920 107940 183720 123410 202220 9821.7 239330 146560 132320 164390 113850 106520 105570 174600 1 1 0 1 1 1 1 1 1 1 1 4101900 0 4101900 13954 705 12795 73398 88619 88619 1 MVEKEEAGGGISEEEAAQYDR Acetyl (Protein N-term);Oxidation (M) 2355.0172 0.017249146 3076 Q9UBE0;Q9UBE0-3;Q9UBE0-2 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed no no 1 0 1 1 By matching 1 0 1 1 45.86 45.86 3 1 NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 157420000 157420000 0 13955 3076 12796 73399 0 MVEVDLHGR Oxidation (M) 1070.5179 0.51787847 1239 P55201;P55201-4;P55201-3;P55201-2 BRPF1 Peregrin yes no 0 0 1 0 By MS/MS 3 0 1 1 32.339 32.094 3 0.048396 9884 20211116_3441_TMUAki_TMT10x_S_F3 41.664 32.901 491030 774900 7898.7 789050 559720 470960 625000 381860 428940 390410 629190 457250 723120 49033 799210 538810 497400 624480 393000 452060 380940 600760 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 491030 774900 7898.7 789050 559720 470960 625000 381860 428940 390410 629190 457250 723120 49033 799210 538810 497400 624480 393000 452060 380940 600760 1 1 1 1 1 1 1 1 1 1 1 10187000 0 10187000 13956 1239 12797 73400 88620 88620 1680 1 MVGFIIGR Oxidation (M) 907.49496 0.49495818 2494 Q96I24;Q96I24-2 FUBP3 Far upstream element-binding protein 3 yes no 0 0 1 0 By MS/MS By matching 1.67 0.471 1 2 2 1 51.181 51.045 2 0.10848 16105 20211116_3429_TMUAki_TMT10x_P_F2 53.576 28.725 5608400 9281000 178120 9517900 9579400 11949000 7168300 6707600 7373400 6859400 7443300 5223100 8661000 658020 9729500 9133500 11905000 7403600 7088900 7494700 6693000 7178100 2 2 1 2 2 2 2 2 2 2 2 5608400 9281000 178120 9517900 9579400 11949000 7168300 6707600 7373400 6859400 7443300 5223100 8661000 658020 9729500 9133500 11905000 7403600 7088900 7494700 6693000 7178100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 590360000 431180000 159180000 13957 2494 12798 73401;73402;73403 88621 88621 2775 1 MVGFIIGR Unmodified 891.50004 0.50004356 2494 Q96I24;Q96I24-2 FUBP3 Far upstream element-binding protein 3 yes no 0 0 0 0 By MS/MS 4 0 1 1 63.058 62.91 2 0.0021033 20160 20211116_3442_TMUAki_TMT10x_S_F4 127.66 96.939 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13958 2494 12798 73404 88622 88622 1 MVGGEAAAAVEELVSGVR Acetyl (Protein N-term);Oxidation (M) 1801.888 0.88801329 2487 Q96HQ2-2;Q96HQ2 CDKN2AIPNL CDKN2AIP N-terminal-like protein yes no 1 0 1 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 82.202 82.19 2 9.8992E-51 28632 20211116_3429_TMUAki_TMT10x_P_F2 156.81 145.66 7613500 12653000 82782 13381000 8343800 10338000 9626600 6661800 6711700 7798700 9881800 7088800 11810000 506810 13554000 8031800 10636000 9607400 6992800 7068100 7569800 9434500 8 8 4 8 8 8 8 8 8 8 8 3045300 5282800 24701 5568600 3054400 5842700 3675100 2880700 2750100 3578300 4503800 2835400 4930500 124550 5664800 2943900 5868700 3666800 3099200 2900500 3466000 4290400 3 3 1 3 3 3 3 3 3 3 3 4568200 7370600 58081 7812500 5289400 4495000 5951500 3781100 3961600 4220400 5378000 4253400 6879200 382250 7889200 5087900 4767800 5940600 3893600 4167600 4103800 5144100 5 5 3 5 5 5 5 5 5 5 5 1329800000 680050000 649760000 13959 2487 12799 73405;73406;73407;73408;73409 88623;88624;88625;88626;88627;88628;88629;88630 88624 2772 8 MVGGEAAAAVEELVSGVR Acetyl (Protein N-term) 1785.8931 0.89309867 2487 Q96HQ2-2;Q96HQ2 CDKN2AIPNL CDKN2AIP N-terminal-like protein yes no 1 0 0 0 By MS/MS By MS/MS 2.75 1.09 1 2 1 2 2 83.933 83.917 2 3.9005E-50 27881 20211116_3428_TMUAki_TMT10x_P_F1 141.58 125.01 3755600 6495500 184280 5679100 3622000 7188300 4558600 4274900 4981000 4922400 5144200 3498200 6057900 481240 5873900 3507700 7164400 4588100 4512800 5054700 4780800 4957400 4 4 4 4 4 4 4 4 4 4 4 3587800 6158900 182510 5400200 3357500 6941200 4327600 4036900 4723700 4626500 4909600 3341900 5744100 464320 5585800 3254800 6911000 4351200 4268700 4794800 4494200 4730300 3 3 3 3 3 3 3 3 3 3 3 167820 336580 1777.5 278860 264490 247050 231010 237920 257320 295910 234630 156270 313850 16924 288080 252870 253440 236890 244100 259820 286610 227040 1 1 1 1 1 1 1 1 1 1 1 262120000 214420000 47702000 13960 2487 12799 73410;73411;73412;73413 88631;88632;88633;88634 88632 4 MVGGVLVER Oxidation (M) 974.5219 0.52190122 3123 Q9UHV9 PFDN2 Prefoldin subunit 2 yes yes 0 0 1 0 By MS/MS By MS/MS 3.8 1.66 1 2 1 2 2 2 4 6 37.582 37.591 2 4.9165E-05 8655 20211116_3444_TMUAki_TMT10x_S_F5 118.07 75.672 8342000 13457000 57668 14277000 14075000 14610000 9892200 9122100 9873500 8656700 11309000 7767600 12560000 823220 14512000 13394000 14740000 10252000 9537800 10096000 8473800 10865000 9 9 7 9 9 9 9 9 9 9 9 5935400 9588700 41011 10209000 11655000 12303000 7293900 6611100 7098900 6242700 8007100 5526700 8949600 609220 10402000 11068000 12277000 7620500 6997900 7262700 6112200 7696000 4 4 3 4 4 4 4 4 4 4 4 2406600 3868700 16657 4068500 2419400 2306900 2598300 2511000 2774700 2414000 3301500 2240900 3610700 214000 4110100 2325300 2463400 2631700 2539800 2833700 2361600 3168500 5 5 4 5 5 5 5 5 5 5 5 1515900000 1172000000 343850000 13961 3123 12800 73414;73415;73416;73417;73418;73419;73420;73421;73422;73423 88635;88636;88637;88638;88639;88640;88641;88642;88643 88641 3145 9 MVGGVLVER Unmodified 958.52699 0.52698659 3123 Q9UHV9 PFDN2 Prefoldin subunit 2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 45.763 45.919 2 0.00020181 13023 20211116_3433_TMUAki_TMT10x_P_F5 134.81 105 35192000 54667000 126890 63880000 51710000 47243000 37873000 33952000 31198000 30334000 43354000 32768000 51045000 3185400 64268000 49237000 48856000 38933000 35083000 32462000 29774000 41446000 7 7 3 7 7 7 7 7 7 7 7 18404000 28027000 38726 32774000 35232000 34497000 22575000 17599000 16607000 15496000 22330000 17136000 26170000 1782500 33126000 33465000 34658000 23376000 18684000 17359000 15221000 21364000 4 4 2 4 4 4 4 4 4 4 4 16789000 26641000 88160 31105000 16478000 12746000 15299000 16353000 14591000 14837000 21024000 15632000 24875000 1402900 31143000 15772000 14198000 15558000 16399000 15103000 14553000 20082000 3 3 1 3 3 3 3 3 3 3 3 1736700000 1039200000 697490000 13962 3123 12800 73424;73425;73426;73427 88644;88645;88646;88647;88648;88649;88650 88647 7 MVGQLSEGAIAAIMQK Acetyl (Protein N-term) 1687.8637 0.8637128 828 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 1 0 0 0 By MS/MS 7 0 1 1 82.758 82.785 2 9.5138E-22 29383 20211116_3446_TMUAki_TMT10x_S_F7 99.283 83.711 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13963 828 12801 73428 88651 88651 1 MVIITGPPEAQFK Unmodified 1429.7639 0.7639224 3032;86;3353 Q9NZI8;Q9NZI8-2;O00425;O00425-2;Q9Y6M1;Q9Y6M1-5;Q9Y6M1-6;Q9Y6M1-3;Q9Y6M1-4;Q9Y6M1-1 IGF2BP1;IGF2BP3;IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 1;Insulin-like growth factor 2 mRNA-binding protein 3;Insulin-like growth factor 2 mRNA-binding protein 2 no no 0 0 0 0 By MS/MS By MS/MS 5.38 2.98 4 1 4 4 6 7 68.141 68.254 2;3 1.5702E-44 21514 20211116_3436_TMUAki_TMT10x_P_F8 294.24 233.08 123290000 202730000 644900 204230000 146410000 168920000 147230000 96551000 78759000 104800000 141220000 114800000 189180000 10529000 207710000 140400000 172640000 147180000 102070000 85337000 102010000 134300000 17 17 10 17 17 17 17 17 17 17 17 65561000 106660000 388010 108400000 79518000 118630000 87480000 52839000 43045000 57630000 73356000 61044000 99535000 5689500 110620000 76450000 118740000 86943000 57186000 46811000 56087000 69826000 9 9 5 9 9 9 9 9 9 9 9 57733000 96068000 256890 95822000 66887000 50294000 59752000 43713000 35714000 47167000 67867000 53754000 89641000 4839400 97091000 63950000 53897000 60238000 44880000 38526000 45924000 64474000 8 8 5 8 8 8 8 8 8 8 8 19236000000 10139000000 9097300000 13964 3032;86;3353 12802 73429;73430;73431;73432;73433;73434;73435;73436;73437;73438;73439;73440;73441 88652;88653;88654;88655;88656;88657;88658;88659;88660;88661;88662;88663;88664;88665;88666;88667;88668;88669 88659 18 MVIITGPPEAQFK Oxidation (M) 1445.7588 0.75883702 3032;86;3353 Q9NZI8;Q9NZI8-2;O00425;O00425-2;Q9Y6M1;Q9Y6M1-5;Q9Y6M1-6;Q9Y6M1-3;Q9Y6M1-4;Q9Y6M1-1 IGF2BP1;IGF2BP3;IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 1;Insulin-like growth factor 2 mRNA-binding protein 3;Insulin-like growth factor 2 mRNA-binding protein 2 no no 0 0 1 0 By MS/MS By MS/MS 5.75 2.28 2 1 3 4 2 6 6 59.116 59.343 2;3 6.1342E-19 19603 20211116_3446_TMUAki_TMT10x_S_F7 191.4 169.65 85259000 143460000 1037000 134300000 112210000 158490000 98556000 145930000 152600000 126330000 127930000 79386000 133830000 7596600 138020000 107250000 159680000 102360000 148420000 152000000 124190000 124170000 13 13 8 13 13 13 13 13 13 13 13 49041000 83014000 450060 73695000 71535000 120860000 64352000 85113000 90713000 77004000 75709000 45659000 77426000 4034700 76545000 68388000 119410000 66467000 88098000 90599000 75540000 73498000 7 7 4 7 7 7 7 7 7 7 7 36218000 60444000 586920 60609000 40670000 37627000 34203000 60818000 61884000 49327000 52222000 33727000 56401000 3561900 61476000 38866000 40270000 35889000 60321000 61402000 48649000 50676000 6 6 4 6 6 6 6 6 6 6 6 14679000000 8127400000 6551400000 13965 3032;86;3353 12802 73442;73443;73444;73445;73446;73447;73448;73449;73450;73451;73452;73453 88670;88671;88672;88673;88674;88675;88676;88677;88678;88679;88680;88681;88682;88683 88682 62 14 MVINHLEK Oxidation (M) 998.5219 0.52190122 1146 P50990;P50990-2 CCT8 T-complex protein 1 subunit theta yes no 0 0 1 0 By MS/MS By MS/MS 5.33 0.816 1 5 2 1 4 5 32.13 32.248 3 0.00073544 8178 20211116_3433_TMUAki_TMT10x_P_F5 114.99 54.306 6691200 10831000 50262 9928300 10437000 10876000 7775300 6175900 6876600 6398600 8463800 6230300 10103000 616530 10206000 9941000 10916000 7998100 6523100 7091400 6240100 8115600 14 14 8 14 14 14 14 14 14 14 14 4994500 8033700 22852 7357900 8584200 9385200 5896700 4606800 5236900 4806600 6309400 4650300 7493800 450470 7584300 8162500 9328600 6101400 4931000 5394600 4686100 6053200 6 6 3 6 6 6 6 6 6 6 6 1696700 2797500 27410 2570400 1852500 1490900 1878600 1569100 1639700 1592100 2154400 1580000 2609500 166050 2622100 1778500 1587100 1896800 1592100 1696800 1554000 2062300 8 8 5 8 8 8 8 8 8 8 8 809100000 729820000 79275000 13966 1146 12803 73454;73455;73456;73457;73458;73459;73460;73461;73462 88684;88685;88686;88687;88688;88689;88690;88691;88692;88693;88694;88695;88696;88697;88698 88685 1515 15 MVINHLEK Unmodified 982.52699 0.52698659 1146 P50990;P50990-2 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 By MS/MS By MS/MS 5.89 0.567 2 6 1 3 6 35.366 35.557 3 0.00015278 8739 20211116_3445_TMUAki_TMT10x_S_F6 141.48 56.268 9916800 14800000 209180 15914000 14474000 11903000 11126000 6268100 6018700 6553700 11170000 9235000 13814000 1072800 16096000 13806000 12247000 11303000 6666000 6529300 6388900 10616000 9 9 7 9 9 9 9 9 9 9 9 6031400 8668700 147150 9586900 10640000 8738900 6890400 3345600 3193700 3605000 6485200 5616900 8092200 701740 9702700 10117000 8833700 7070900 3681500 3527600 3510100 6154100 4 4 4 4 4 4 4 4 4 4 4 3885400 6131300 62022 6327100 3833200 3164400 4236000 2922500 2825000 2948700 4684900 3618100 5721900 371050 6393500 3688800 3413300 4232000 2984400 3001600 2878800 4461800 5 5 3 5 5 5 5 5 5 5 5 693370000 357170000 336200000 13967 1146 12803 73463;73464;73465;73466;73467;73468;73469;73470;73471 88699;88700;88701;88702;88703;88704;88705;88706;88707;88708;88709;88710;88711 88708 13 MVIPGGIDVHTHFQMPYK Oxidation (M) 2085.0176 0.01758768 1692 Q14195-2;Q14195 DPYSL3 Dihydropyrimidinase-related protein 3 yes no 0 0 1 0 By MS/MS 1 0 1 1 56.027 56.027 4 4.2015E-07 16459 20211116_3428_TMUAki_TMT10x_P_F1 101.36 84.864 3451600 5680100 820.73 5611700 4792100 7171600 4197800 3778800 3429500 3398000 4374600 3213700 5299900 305700 5753000 4580000 7133500 4265300 4001800 3556100 3334400 4190700 1 1 1 1 1 1 1 1 1 1 1 3451600 5680100 820.73 5611700 4792100 7171600 4197800 3778800 3429500 3398000 4374600 3213700 5299900 305700 5753000 4580000 7133500 4265300 4001800 3556100 3334400 4190700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 513100000 513100000 0 13968 1692 12804 73472 88712 88712 2271;2272 1 MVIPGGIDVHTHFQMPYK 2 Oxidation (M) 2101.0125 0.012502302 1692 Q14195-2;Q14195 DPYSL3 Dihydropyrimidinase-related protein 3 yes no 0 0 2 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 50.143 50.355 4 2.4296E-08 14267 20211116_3436_TMUAki_TMT10x_P_F8 111.11 99.837 4557000 8376300 4812.7 8299200 7441300 11163000 6204200 9923100 10402000 8282400 7018800 4242700 7815700 384530 8514800 7101800 11168000 6487800 10103000 10278000 8156600 6875500 3 3 1 3 3 3 3 3 3 3 3 3189300 5879500 4812.7 5816200 5848400 9396900 4773700 6309300 6903400 5422500 4707100 2969500 5485900 299170 5991500 5580500 9282700 4964300 6544100 6851900 5332400 4608700 2 2 1 2 2 2 2 2 2 2 2 1367700 2496900 0 2483000 1592900 1766300 1430500 3613800 3498200 2859900 2311800 1273200 2329800 85356 2523400 1521200 1885100 1523600 3558500 3426200 2824200 2266800 1 1 0 1 1 1 1 1 1 1 1 2300400000 1329600000 970880000 13969 1692 12804 73473;73474;73475 88713;88714;88715 88714 2271;2272 3 MVIPGGIDVHTR Oxidation (M) 1309.6813 0.6812554 1852 Q16555;Q16555-2 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 1 0 By MS/MS By MS/MS 5.74 1.12 4 2 9 3 1 6 13 35.976 36.205 3 3.5418E-09 10256 20211116_3433_TMUAki_TMT10x_P_F5 148.18 129.45 10142000 15721000 180790 17538000 19148000 16793000 12815000 13276000 14240000 11625000 14795000 9444400 14677000 1096000 17752000 18210000 17075000 13374000 13626000 14444000 11421000 14255000 17 17 11 17 17 17 17 17 17 17 17 6564000 9855900 79569 10509000 15877000 13625000 9147300 8392000 8976100 7287300 9239100 6112000 9199100 716070 10722000 15057000 13570000 9625100 8763400 9148500 7162700 8904500 8 8 5 8 8 8 8 8 8 8 8 3578200 5865500 101220 7028400 3271100 3168300 3667900 4883800 5264100 4337500 5556200 3332400 5477400 379900 7030200 3152200 3504300 3749200 4862600 5295900 4258700 5350800 9 9 6 9 9 9 9 9 9 9 9 3193600000 1820200000 1373400000 13970 1852 12805 73476;73477;73478;73479;73480;73481;73482;73483;73484;73485;73486;73487;73488;73489;73490;73491;73492;73493;73494 88716;88717;88718;88719;88720;88721;88722;88723;88724;88725;88726;88727;88728;88729;88730;88731;88732;88733;88734;88735;88736;88737;88738;88739 88717 2466 24 MVIPGGIDVHTR Unmodified 1293.6863 0.68634078 1852 Q16555;Q16555-2 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 1.12 2 2 2 2 4 4 47.216 47.437 3 3.7223E-12 14309 20211116_3435_TMUAki_TMT10x_P_F7 169.33 144.48 7925800 12490000 81882 14304000 12655000 11874000 9024100 9212900 8838400 8428100 10960000 7379900 11661000 748920 14428000 12045000 12186000 9337600 9477900 9074900 8263700 10507000 9 9 5 9 9 9 9 9 9 9 9 4107500 6151300 40800 7268800 8840100 8846100 5505300 4508100 4265600 3994400 5478400 3824500 5744000 415970 7360000 8393100 8817100 5720300 4787000 4436800 3922300 5247200 4 4 3 4 4 4 4 4 4 4 4 3818300 6338700 41083 7035300 3815200 3027500 3518800 4704900 4572700 4433700 5481400 3555400 5917300 332940 7068100 3651800 3369100 3617400 4690800 4638100 4341400 5259500 5 5 2 5 5 5 5 5 5 5 5 6149600000 3525400000 2624200000 13971 1852 12805 73495;73496;73497;73498;73499;73500;73501;73502 88740;88741;88742;88743;88744;88745;88746;88747;88748;88749 88743 10 MVLAAAGGVEHQQLLDLAQK Oxidation (M) 2107.1096 0.10957381 891 P31930 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 6.86 0.639 2 4 1 5 2 61.378 61.897 3;4 1.0537E-09 20116 20211116_3435_TMUAki_TMT10x_P_F7 118.48 103.79 22898000 39999000 140420 34494000 24729000 32675000 24414000 31358000 29363000 28323000 29575000 21319000 37302000 1775900 35551000 23693000 33369000 24934000 31858000 29663000 27787000 28523000 6 6 2 6 6 6 6 6 6 6 6 8891100 15251000 140420 13600000 9720600 18360000 10373000 12771000 11858000 11770000 12691000 8279100 14225000 823670 14062000 9341800 18284000 10533000 13237000 12028000 11536000 12216000 3 3 2 3 3 3 3 3 3 3 3 14007000 24747000 0 20894000 15008000 14315000 14041000 18587000 17505000 16553000 16884000 13040000 23078000 952240 21489000 14352000 15085000 14401000 18621000 17634000 16251000 16307000 3 3 0 3 3 3 3 3 3 3 3 3536700000 2021000000 1515800000 13972 891 12806 73503;73504;73505;73506;73507;73508;73509 88750;88751;88752;88753;88754;88755;88756;88757 88752 1082 8 MVLAAAGGVEHQQLLDLAQK Unmodified 2091.1147 0.11465919 891 P31930 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 3 3 2 4 68.281 68.454 3;4 3.6987E-25 21109 20211116_3447_TMUAki_TMT10x_S_F8 176.81 149.66 39757000 63781000 280770 67772000 45090000 49011000 44659000 31215000 25784000 30411000 44364000 37018000 59529000 3481400 68576000 43230000 50687000 44738000 32611000 27716000 29734000 42222000 8 8 5 8 8 8 8 8 8 8 8 22976000 34047000 192960 37693000 24495000 33570000 26391000 18163000 14415000 16085000 24984000 21394000 31783000 1971200 38134000 23537000 34107000 26300000 19182000 15563000 15795000 23774000 4 4 3 4 4 4 4 4 4 4 4 16780000 29734000 87808 30079000 20595000 15441000 18268000 13052000 11370000 14325000 19381000 15625000 27746000 1510300 30442000 19693000 16579000 18439000 13429000 12153000 13938000 18448000 4 4 2 4 4 4 4 4 4 4 4 4256100000 1829400000 2426700000 13973 891 12806 73510;73511;73512;73513;73514;73515 88758;88759;88760;88761;88762;88763;88764;88765 88764 8 MVLAGVGVEHEHLVDCAR Unmodified 1990.9717 0.97170012 1559 Q10713;Q10713-2 PMPCA Mitochondrial-processing peptidase subunit alpha yes no 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 2 3 46.481 46.631 3;4 1.483E-17 12440 20211116_3445_TMUAki_TMT10x_S_F6 152.37 144.78 3725800 6283100 159440 7315400 4503500 4131500 4018400 5059000 4905100 4414600 5583400 3470300 5866700 468380 7342400 4315600 4426200 4128900 5077600 4975300 4338000 5365100 5 5 5 5 5 5 5 5 5 5 5 924430 1334900 51345 1622400 1726700 1672000 1319800 1104900 1068800 1072000 1323100 861120 1246700 135730 1635500 1648500 1687500 1352200 1151000 1107300 1048300 1268500 1 1 1 1 1 1 1 1 1 1 1 2801400 4948200 108100 5693000 2776800 2459600 2698600 3954100 3836300 3342600 4260300 2609200 4620000 332650 5706900 2667100 2738700 2776600 3926600 3868000 3289700 4096700 4 4 4 4 4 4 4 4 4 4 4 827910000 262080000 565830000 13974 1559 12807 73516;73517;73518;73519;73520 88766;88767;88768;88769;88770;88771 88771 6 MVLAGVGVEHEHLVDCAR Oxidation (M) 2006.9666 0.96661474 1559 Q10713;Q10713-2 PMPCA Mitochondrial-processing peptidase subunit alpha yes no 0 0 1 0 By matching By MS/MS 5 0 2 1 1 40.318 40.395 4 2.9215E-17 9718 20211116_3444_TMUAki_TMT10x_S_F5 142.39 131.57 598110 1067400 0 948420 646850 453090 532120 879320 729420 637630 790450 556880 995560 48131 968540 617200 501710 551860 865290 735590 632700 760630 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 598110 1067400 0 948420 646850 453090 532120 879320 729420 637630 790450 556880 995560 48131 968540 617200 501710 551860 865290 735590 632700 760630 1 1 0 1 1 1 1 1 1 1 1 606280000 415800000 190480000 13975 1559 12807 73521;73522 88772 88772 2101 1 MVLDHLVIQR Unmodified 1222.6856 0.6856125 122 O14647;O14647-2;O14646;O14646-2 CHD2;CHD1 Chromodomain-helicase-DNA-binding protein 2;Chromodomain-helicase-DNA-binding protein 1 yes no 0 0 0 0 By MS/MS 8 0 1 1 52.852 52.765 3 0.00055576 14747 20211116_3447_TMUAki_TMT10x_S_F8 82.417 64.552 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13976 122 12808 73523 88773 88773 1 MVLVGDVK Unmodified 859.48372 0.48372479 1279;633 P11908;P11908-2;P60891;P60891-2 PRPS2;PRPS1 Ribose-phosphate pyrophosphokinase 2;Ribose-phosphate pyrophosphokinase 1 no no 0 0 0 0 By MS/MS 7 0 1 1 54.217 54.737 2 0.0030556 17751 20211116_3446_TMUAki_TMT10x_S_F7 100.15 39.361 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13977 633;1279 12809 73524 88774 88774 1 MVMIQDGPLPTGADKPLR 2 Oxidation (M) 1969.9965 0.99651789 2494 Q96I24;Q96I24-2 FUBP3 Far upstream element-binding protein 3 yes no 0 0 2 1 By MS/MS 6 0 1 1 49.822 49.922 3 0.00014791 13415 20211116_3434_TMUAki_TMT10x_P_F6 69.111 57.497 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13978 2494 12810 73525 88775 88775 2776;2777 1 MVMIQDGPQNTGADKPLR 2 Oxidation (M) 2001.9612 0.96119501 2408;2407 Q96AE4-2;Q96AE4 FUBP1 Far upstream element-binding protein 1 no no 0 0 2 1 By MS/MS By MS/MS 5.42 0.862 2 4 5 1 7 5 38.639 38.725 3;4 1.8448E-23 10143 20211116_3433_TMUAki_TMT10x_P_F5 169.64 163.48 6224800 9767300 17367 11466000 15056000 15482000 8117700 11308000 15258000 8831000 10486000 5795300 9120300 569420 11638000 14258000 15431000 8818000 11633000 15041000 8726900 10263000 14 14 6 14 14 14 14 14 14 14 14 4502900 6861900 3319.9 8204800 13628000 14151000 6671700 8317900 11477000 6530100 7623100 4192200 6407900 441960 8364300 12889000 13918000 7279900 8697900 11328000 6451300 7473000 6 6 1 6 6 6 6 6 6 6 6 1721900 2905400 14047 3261600 1428000 1331000 1446000 2989900 3781700 2300900 2862800 1603200 2712400 127460 3273400 1369000 1512300 1538100 2935600 3712400 2275500 2790100 8 8 5 8 8 8 8 8 8 8 8 790070000 549890000 240180000 13979 2408;2407 12811 73526;73527;73528;73529;73530;73531;73532;73533;73534;73535;73536;73537 88776;88777;88778;88779;88780;88781;88782;88783;88784;88785;88786;88787;88788;88789;88790;88791;88792;88793 88780 2736;2737 18 MVMIQDGPQNTGADKPLR Oxidation (M) 1985.9663 0.96628039 2408;2407 Q96AE4-2;Q96AE4 FUBP1 Far upstream element-binding protein 1 no no 0 0 1 1 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 42.937 43.271 3 1.3619E-13 12624 20211116_3446_TMUAki_TMT10x_S_F7 140.75 129.06 3144300 4756100 3065.2 6099700 8672700 7323000 4610200 3313500 3356700 3155800 4087100 2927300 4443000 293240 6146100 8210700 7294600 4849900 3566600 3495700 3088600 3920100 3 3 1 3 3 3 3 3 3 3 3 2845900 4256800 0 5440000 8456000 7187300 4415200 3178500 3244200 3003400 3724700 2649400 3976400 266780 5492300 8003300 7124100 4653600 3428700 3368700 2940500 3578300 2 2 0 2 2 2 2 2 2 2 2 298400 499340 3065.2 659690 216660 135630 195000 135020 112510 152330 362360 277860 466540 26451 653830 207380 170480 196380 137830 126930 148060 341820 1 1 1 1 1 1 1 1 1 1 1 473990000 434730000 39264000 13980 2408;2407 12811 73538;73539 88794;88795;88796 88796 2736;2737 3 MVMIQDGPQNTGADKPLR Unmodified 1969.9714 0.97136577 2408;2407 Q96AE4-2;Q96AE4 FUBP1 Far upstream element-binding protein 1 no no 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 48.37 48.716 3 3.9355E-31 14842 20211116_3435_TMUAki_TMT10x_P_F7 185.02 176.63 8355700 12619000 236700 17361000 22538000 16546000 12201000 7467000 6506800 6413900 10103000 7781800 11792000 1112000 17364000 21365000 16702000 12740000 8018600 6996300 6307600 9634300 3 3 3 3 3 3 3 3 3 3 3 8355700 12619000 236700 17361000 22538000 16546000 12201000 7467000 6506800 6413900 10103000 7781800 11792000 1112000 17364000 21365000 16702000 12740000 8018600 6996300 6307600 9634300 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 955590000 955590000 0 13981 2408;2407 12811 73540;73541 88797;88798;88799 88799 3 MVNHFIAEFK Oxidation (M) 1250.6118 0.61177885 615 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 1 0 By MS/MS By MS/MS 5.74 2.05 2 2 3 4 4 4 10 9 51.376 51.556 2;3 0.00021669 14229 20211116_3447_TMUAki_TMT10x_S_F8 103.31 81.439 117730000 189090000 1045100 201680000 172320000 198330000 120900000 202430000 204690000 164700000 166950000 109620000 176490000 11031000 204800000 163960000 202340000 127910000 204480000 203230000 162410000 162220000 19 19 10 19 19 19 19 19 19 19 19 58132000 92449000 715460 99925000 107340000 136320000 64703000 90983000 90903000 77859000 79610000 54129000 86293000 5902300 101960000 101880000 135610000 68672000 94400000 90931000 76582000 77147000 10 10 5 10 10 10 10 10 10 10 10 59601000 96641000 329620 101750000 64975000 62014000 56195000 111450000 113790000 86844000 87343000 55495000 90195000 5128700 102850000 62088000 66738000 59243000 110080000 112300000 85830000 85075000 9 9 5 9 9 9 9 9 9 9 9 72926000000 39922000000 33004000000 13982 615 12812 73542;73543;73544;73545;73546;73547;73548;73549;73550;73551;73552;73553;73554;73555;73556;73557;73558;73559;73560 88800;88801;88802;88803;88804;88805;88806;88807;88808;88809;88810;88811;88812;88813;88814;88815;88816;88817;88818;88819;88820 88819 619 21 MVNHFIAEFK Unmodified 1234.6169 0.61686423 615 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 By MS/MS By MS/MS 4.79 2.82 5 2 2 2 4 4 9 10 59.778 59.92 2;3 7.8338E-14 18066 20211116_3428_TMUAki_TMT10x_P_F1 219.7 169.09 233750000 361980000 1000900 424390000 276350000 250680000 224010000 137810000 107580000 149870000 235410000 217640000 338000000 19241000 425940000 263610000 263550000 226360000 146170000 119070000 145880000 223140000 19 19 10 19 19 19 19 19 19 19 19 118220000 175030000 297610 205200000 148930000 165200000 117660000 58873000 46413000 68768000 107210000 110070000 163430000 9553100 206610000 141970000 168370000 118770000 65520000 52492000 66755000 101540000 7 7 4 7 7 7 7 7 7 7 7 115520000 186950000 703270 219190000 127420000 85480000 106350000 78934000 61164000 81107000 128200000 107560000 174560000 9688100 219330000 121640000 95181000 107580000 80650000 66580000 79123000 121600000 12 12 6 12 12 12 12 12 12 12 12 58970000000 33132000000 25838000000 13983 615 12812 73561;73562;73563;73564;73565;73566;73567;73568;73569;73570;73571;73572;73573;73574;73575;73576;73577;73578;73579 88821;88822;88823;88824;88825;88826;88827;88828;88829;88830;88831;88832;88833;88834;88835;88836;88837;88838;88839;88840;88841 88822 21 MVNHFIAEFKR Oxidation (M) 1406.7129 0.71288988 615 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 1 1 By MS/MS By MS/MS 3.4 2.37 1 4 3 2 5 5 45.264 45.144 3;4 1.2762E-05 15164 20211116_3441_TMUAki_TMT10x_S_F3 105.2 84.925 20023000 34585000 247570 35413000 45737000 51415000 27078000 48399000 50082000 38681000 39665000 18644000 32274000 2111400 36308000 43392000 51323000 29154000 49070000 49574000 38178000 38586000 11 11 5 11 11 11 11 11 11 11 11 11899000 19867000 187360 20330000 35224000 41777000 19366000 28645000 30265000 22788000 24579000 11080000 18540000 1405200 21028000 33382000 40941000 20810000 29612000 30111000 22497000 23886000 5 5 2 5 5 5 5 5 5 5 5 8123400 14718000 60212 15083000 10513000 9637900 7712300 19754000 19817000 15893000 15087000 7563700 13735000 706220 15280000 10010000 10382000 8344100 19458000 19463000 15681000 14700000 6 6 3 6 6 6 6 6 6 6 6 5023200000 3486500000 1536700000 13984 615 12813 73580;73581;73582;73583;73584;73585;73586;73587;73588;73589 88842;88843;88844;88845;88846;88847;88848;88849;88850;88851;88852 88850 619 11 MVNHFIAEFKR Unmodified 1390.718 0.71797526 615 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 1 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 53.477 53.35 4 2.6407E-11 17423 20211116_3430_TMUAki_TMT10x_P_F3 165.78 127.6 22700000 35380000 17072 38293000 36705000 32910000 23868000 20556000 15305000 18711000 28593000 21134000 33024000 1908300 38779000 34861000 33581000 24616000 21468000 16416000 18350000 27172000 7 7 2 7 7 7 7 7 7 7 7 11263000 17661000 5783.7 18865000 23490000 23983000 15319000 10139000 7549000 9776200 14119000 10487000 16484000 1058000 19237000 22315000 23805000 15726000 10996000 8253000 9562800 13417000 4 4 1 4 4 4 4 4 4 4 4 11437000 17719000 11288 19428000 13215000 8926900 8548600 10418000 7755700 8934900 14474000 10648000 16540000 850260 19542000 12546000 9775400 8890600 10472000 8163100 8787400 13754000 3 3 1 3 3 3 3 3 3 3 3 2310100000 1311900000 998150000 13985 615 12813 73590;73591;73592;73593;73594;73595 88853;88854;88855;88856;88857;88858;88859 88854 7 MVNPTVFFDIAVDGEPLGR Acetyl (Protein N-term);Oxidation (M) 2134.0405 0.040491191 1385 P62937 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes yes 1 0 1 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 83.838 83.829 2 7.8698E-59 29287 20211116_3429_TMUAki_TMT10x_P_F2 206.53 189.32 6866500 11619000 87903 11121000 7521300 9024400 8123800 4604900 4351300 5475500 8120100 6394000 10839000 634700 11349000 7232200 9223500 8092000 4931000 4725500 5311800 7716500 10 10 8 10 10 10 10 10 10 10 10 3632600 5975800 65931 5640000 3218000 5823300 4231700 2306400 2243200 2945100 4211000 3382800 5574800 331340 5780100 3115100 5842100 4177900 2541600 2438900 2850000 4001300 5 5 4 5 5 5 5 5 5 5 5 3233900 5642700 21972 5481400 4303300 3201100 3892100 2298500 2108100 2530400 3909100 3011200 5264700 303360 5569200 4117200 3381400 3914200 2389400 2286600 2461800 3715200 5 5 4 5 5 5 5 5 5 5 5 894820000 553340000 341480000 13986 1385 12814 73596;73597;73598;73599;73600;73601;73602;73603 88860;88861;88862;88863;88864;88865;88866;88867;88868;88869 88861 1862 10 MVPAGMGAGLER 2 Oxidation (M) 1219.5689 0.56892776 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 2 0 By MS/MS By MS/MS 4.67 1.76 1 2 1 2 2 1 5 4 32.586 32.623 2;3 0.00022438 10021 20211116_3441_TMUAki_TMT10x_S_F3 87.258 67.268 2178800 3556700 12811 3902500 4308000 4060800 2710500 2176900 2745400 2263800 3053500 2028600 3320000 205770 3959200 4090600 4084800 2833900 2311000 2802400 2207400 2936000 10 10 3 10 10 10 10 10 10 10 10 1675900 2692100 10962 2943200 3805500 3618200 2167000 1642300 2076400 1743500 2303800 1560400 2512900 171300 2994900 3608000 3599900 2281000 1772500 2124400 1698700 2215300 5 5 2 5 5 5 5 5 5 5 5 502880 864560 1848.9 959350 502490 442600 543420 534670 669020 520290 749710 468210 807080 34473 964270 482620 484840 552970 538540 677980 508740 720720 5 5 1 5 5 5 5 5 5 5 5 546360000 424460000 121900000 13987 1171 12815 73604;73605;73606;73607;73608;73609;73610;73611;73612 88870;88871;88872;88873;88874;88875;88876 88874 1583;1584 7 MVPAGMGAGLER Oxidation (M) 1203.574 0.57401314 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 1 0 By MS/MS By MS/MS 5.12 0.781 2 3 3 5 3 37.524 37.576 2;3 0.0073166 8565 20211116_3444_TMUAki_TMT10x_S_F5 69.338 47.207 4780600 7287500 2860.4 8712000 8818000 6860600 5675300 2965700 3229400 3115000 5451100 4451000 6805300 419710 8759400 8373900 7015800 5845300 3216400 3471300 3036100 5189700 6 6 2 6 6 6 6 6 6 6 6 3612800 5463600 2860.4 6574300 7817000 6175700 4567100 2244100 2508300 2376300 4093500 3363800 5102300 341300 6622500 7412500 6227600 4738800 2484100 2698100 2315400 3899800 4 4 2 4 4 4 4 4 4 4 4 1167800 1823800 0 2137600 1001000 684920 1108200 721570 721180 738740 1357600 1087200 1703000 78408 2136900 961480 788180 1106500 732310 773190 720780 1289900 2 2 0 2 2 2 2 2 2 2 2 707360000 598520000 108830000 13988 1171 12815 73613;73614;73615;73616;73617;73618;73619;73620 88877;88878;88879;88880;88881;88882 88881 1583;1584 6 MVPAGMGAGLER Unmodified 1187.5791 0.57909852 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 48.679 48.806 2 0.0037595 13393 20211116_3445_TMUAki_TMT10x_S_F6 73.196 52.914 4838300 8083000 25617 8771900 6520000 7683900 5149800 7827300 6938600 6073100 7354100 4505000 7544900 441560 8883900 6218400 7898200 5350600 7898500 6995300 6003600 7081400 2 2 1 2 2 2 2 2 2 2 2 1872700 3201500 0 3402400 3267000 5271800 2598500 3437300 3342200 2749200 2758900 1743700 2988100 167790 3484800 3115300 5214000 2693800 3566800 3346900 2713400 2679500 1 1 0 1 1 1 1 1 1 1 1 2965500 4881500 25617 5369500 3253100 2412100 2551200 4390000 3596400 3323900 4595200 2761400 4556800 273760 5399100 3103100 2684200 2656900 4331700 3648400 3290200 4401900 1 1 1 1 1 1 1 1 1 1 1 945750000 493290000 452460000 13989 1171 12815 73621;73622 88883 88883 1 MVPDFYVDSIADLLPALQG Oxidation (M) 2079.0234 0.023444144 14 A6NDG6 PGP Phosphoglycolate phosphatase yes yes 0 0 1 0 By MS/MS By MS/MS 4 1.41 1 2 1 3 1 85.367 85.376 2;3 1.037E-05 28892 20211116_3431_TMUAki_TMT10x_P_F4 91.313 75.926 845920 1291200 3089.7 1300200 834130 1490200 930500 934470 899040 913020 1145700 787610 1204900 67324 1328600 802050 1493900 937830 977510 924750 892590 1097600 4 4 1 4 4 4 4 4 4 4 4 742600 1130600 0 1149500 716290 1386700 809240 801770 787100 792390 1035400 691390 1055000 55675 1174900 688790 1384900 815300 844430 810520 774270 991150 3 3 0 3 3 3 3 3 3 3 3 103320 160640 3089.7 150700 117840 103490 121260 132690 111950 120630 110290 96224 149850 11649 153740 113260 108990 122530 133080 114240 118310 106440 1 1 1 1 1 1 1 1 1 1 1 104670000 101200000 3467300 13990 14 12816 73623;73624;73625;73626 88884;88885;88886;88887 88886 12 4 MVPFQVPEILR Oxidation (M) 1343.7271 0.72714296 2055 Q7L2E3;Q7L2E3-2;Q7L2E3-3 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 0 0 1 0 By MS/MS By MS/MS 8 0 2 1 1 72.845 72.789 2 0.075531 23355 20211116_3436_TMUAki_TMT10x_P_F8 54.419 25.676 6598400 11771000 108130 10179000 8298200 11163000 8423000 8228100 8176800 8596800 9177300 6144400 10977000 659730 10511000 7965600 11246000 8529700 8524900 8364800 8380900 8822000 2 2 1 2 2 2 2 2 2 2 2 2717400 4618400 0 4031900 2961500 5989800 3104300 3434400 3351800 3119800 3344200 2530100 4307300 216810 4183900 2842400 5923800 3149000 3611400 3398800 3060000 3226200 1 1 0 1 1 1 1 1 1 1 1 3880900 7152100 108130 6147100 5336700 5173600 5318700 4793700 4825100 5477000 5833100 3614300 6669900 442920 6327500 5123200 5322100 5380600 4913600 4966000 5320900 5595800 1 1 1 1 1 1 1 1 1 1 1 568050000 314350000 253700000 13991 2055 12817 73627;73628 88888;88889 88888 2567 2 MVPTSDK Oxidation (M) 792.36875 0.36875462 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 1 0 By MS/MS 5 0 1 1 30.813 30.955 2 0.071819 5865 20211116_3444_TMUAki_TMT10x_S_F5 69.344 21.438 32707 48312 0 57922 22518 18469 37607 10343 9890 8947.7 27696 30454 45116 0 57821 21971 21066 36500 10884 11906 8796.2 26166 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32707 48312 0 57922 22518 18469 37607 10343 9890 8947.7 27696 30454 45116 0 57821 21971 21066 36500 10884 11906 8796.2 26166 1 1 0 1 1 1 1 1 1 1 1 1259100 0 1259100 13992 653 12818 73629 88890 88890 709 1 MVPVSVQQSLAAYNQR Oxidation (M) 1805.9094 0.90941744 2301 Q8WUM4;Q8WUM4-2 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 1 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 55.43 55.262 3 4.8879E-15 16172 20211116_3428_TMUAki_TMT10x_P_F1 142.45 118.52 9493300 15241000 72079 15333000 12906000 16108000 10215000 14665000 14591000 13440000 13779000 8839600 14222000 884110 15647000 12311000 16329000 10638000 14946000 14623000 13176000 13317000 6 6 4 6 6 6 6 6 6 6 6 3988000 5774500 9201.3 5786700 6806600 10622000 5060700 6040300 6870800 5654300 5950800 3713100 5388300 361030 5974800 6482000 10420000 5280600 6361000 6878000 5538100 5769000 2 2 1 2 2 2 2 2 2 2 2 5505300 9466500 62878 9546300 6099900 5485500 5154600 8624600 7719900 7785400 7827900 5126400 8833500 523080 9672500 5828900 5909300 5357300 8585400 7745200 7638200 7547900 4 4 3 4 4 4 4 4 4 4 4 1239100000 607030000 632030000 13993 2301 12819 73630;73631;73632;73633 88891;88892;88893;88894;88895;88896;88897 88892 2664 7 MVQEAEK Oxidation (M) 849.39022 0.39021834 615;596 P0DMV8;P0DMV9;P0DMV8-2;P11142 HSPA1A;HSPA1B;HSPA8 Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock cognate 71 kDa protein no no 0 0 1 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 29.588 29.339 2 0.0073967 8792 20211116_3441_TMUAki_TMT10x_S_F3 110.12 72.961 639030 1031100 3862.9 832810 689390 931720 707990 379440 407170 429510 698770 595000 961410 54177 865090 661520 930660 707860 415160 437740 417420 665050 2 2 1 2 2 2 2 2 2 2 2 326780 488120 3862.9 404130 316960 543040 284860 188030 204520 222630 343820 304290 455150 30555 420290 303340 536670 288140 210120 216520 216000 327360 1 1 1 1 1 1 1 1 1 1 1 312250 543010 0 428680 372430 388680 423130 191410 202650 206880 354950 290710 506260 23623 444800 358180 393990 419720 205030 221210 201420 337690 1 1 0 1 1 1 1 1 1 1 1 22130000 9705000 12425000 13994 596;615 12820 73634;73635 88898;88899 88899 572 2 MVQEAEK Unmodified 833.3953 0.39530372 615;596 P0DMV8;P0DMV9;P0DMV8-2;P11142 HSPA1A;HSPA1B;HSPA8 Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock cognate 71 kDa protein no no 0 0 0 0 By matching By MS/MS 2.5 0.5 1 1 1 1 33.754 33.523 2 0.0013507 10421 20211116_3441_TMUAki_TMT10x_S_F3 144.38 87.272 1556600 2664100 8049.5 2375500 1587400 1107300 2006300 518390 470890 584570 1473600 1449400 2484800 136980 2424900 1533100 1193000 1965600 558760 581820 568200 1390500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1556600 2664100 8049.5 2375500 1587400 1107300 2006300 518390 470890 584570 1473600 1449400 2484800 136980 2424900 1533100 1193000 1965600 558760 581820 568200 1390500 1 1 1 1 1 1 1 1 1 1 1 59340000 18344000 40996000 13995 596;615 12820 73636;73637 88900 88900 1 MVQFEENGRK Oxidation (M) 1252.587 0.58702067 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 1 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 32.131 32.116 3 0.0010114 6371 20211116_3444_TMUAki_TMT10x_S_F5 77.744 59.935 2262100 3647500 20228 3418100 4051400 4417700 2450000 2229500 2594700 2116600 2799500 2106300 3402600 225610 3518200 3845300 4389700 2573400 2373900 2640600 2071800 2694200 2 2 1 2 2 2 2 2 2 2 2 2262100 3647500 20228 3418100 4051400 4417700 2450000 2229500 2594700 2116600 2799500 2106300 3402600 225610 3518200 3845300 4389700 2573400 2373900 2640600 2071800 2694200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 220140000 220140000 0 13996 1094 12821 73638;73639;73640 88901;88902;88903 88903 1451 3 MVQFEENGRK Unmodified 1236.5921 0.59210605 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 1 By MS/MS 5 0 1 1 36.401 36.563 3 0.0008696 8147 20211116_3444_TMUAki_TMT10x_S_F5 88.24 63.775 951790 1460100 29596 1674200 918900 744510 959510 759510 702220 725540 1216300 886430 1363200 106030 1678900 883900 816130 963180 770440 743890 710000 1157500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 951790 1460100 29596 1674200 918900 744510 959510 759510 702220 725540 1216300 886430 1363200 106030 1678900 883900 816130 963180 770440 743890 710000 1157500 1 1 1 1 1 1 1 1 1 1 1 43226000 0 43226000 13997 1094 12821 73641 88904 88904 1 MVQQCCTYVEEITDLPIK Oxidation (M) 2242.032 0.031976694 74 O00232;O00232-2 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes no 0 0 1 0 By MS/MS 4.5 0.5 1 1 2 74.794 74.831 3 0.0049316 24780 20211116_3433_TMUAki_TMT10x_P_F5 55.589 44.115 3025800 5188800 10305 4580500 3182900 6046900 3936800 3739000 3065000 3395700 3825100 2817400 4839400 261930 4737700 3071400 6017800 3926800 3907800 3183200 3330600 3666400 2 2 1 2 2 2 2 2 2 2 2 3025800 5188800 10305 4580500 3182900 6046900 3936800 3739000 3065000 3395700 3825100 2817400 4839400 261930 4737700 3071400 6017800 3926800 3907800 3183200 3330600 3666400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1187900000 1187900000 0 13998 74 12822 73642;73643 88905;88906 88906 43 2 MVRPNQDGTLIASCSNDQTVR Oxidation (M) 2377.1114 0.11144108 1025 P43034 PAFAH1B1 Platelet-activating factor acetylhydrolase IB subunit alpha yes yes 0 0 1 1 By MS/MS By MS/MS 5 0.707 1 2 1 3 1 34.535 34.568 3 7.1848E-20 7133 20211116_3444_TMUAki_TMT10x_S_F5 158.02 148.97 1588700 2569200 10437 3594600 5872200 5268700 2810600 3191300 3069700 2302900 2929200 1479100 2401200 177480 3619700 5552600 5217500 3019000 3322900 3106600 2285700 2830000 7 7 4 7 7 7 7 7 7 7 7 1459600 2341500 9944.5 3298400 5767800 5191600 2726300 2886200 2797000 2099600 2678300 1358900 2188400 166670 3325600 5453000 5120200 2926600 3027200 2838200 2083000 2587300 6 6 3 6 6 6 6 6 6 6 6 129020 227680 492.69 296240 104400 77185 84366 305100 272700 203260 250930 120130 212710 10811 294100 99627 97265 92453 295650 268410 202710 242740 1 1 1 1 1 1 1 1 1 1 1 654260000 573900000 80356000 13999 1025 12823 73644;73645;73646;73647 88907;88908;88909;88910;88911;88912;88913 88913 1321 7 MVRPNQDGTLIASCSNDQTVR Unmodified 2361.1165 0.11652646 1025 P43034 PAFAH1B1 Platelet-activating factor acetylhydrolase IB subunit alpha yes yes 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 38.552 38.774 3 6.0368E-115 8901 20211116_3434_TMUAki_TMT10x_P_F6 351.41 326.21 640680 1064800 4443.3 1531700 2023000 1474200 1121300 480590 326950 470770 825180 596550 995340 74244 1528800 1917200 1483100 1159900 538480 385060 460190 780600 3 3 1 3 3 3 3 3 3 3 3 640680 1064800 4443.3 1531700 2023000 1474200 1121300 480590 326950 470770 825180 596550 995340 74244 1528800 1917200 1483100 1159900 538480 385060 460190 780600 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 222780000 222780000 0 14000 1025 12823 73648;73649 88914;88915;88916 88914 3 MVSEEMEEQVHSIR 2 Oxidation (M) 1734.7553 0.75528456 2596 Q99661;Q99661-2 KIF2C Kinesin-like protein KIF2C yes no 0 0 2 0 By MS/MS 1 0 1 1 31.012 31.061 3 1.2637E-06 8370 20211116_3439_TMUAki_TMT10x_S_F1 93.649 82.379 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14001 2596 12824 73650 88917 88917 2831;2832 1 MVSISNYPLSAALTCAK Oxidation (M) 1840.9063 0.9063059 2383 Q92979 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes yes 0 0 1 0 By MS/MS 2 0 1 1 70.002 69.718 3 0.00069145 23623 20211116_3429_TMUAki_TMT10x_P_F2 62.915 6.9403 2818100 4444100 0 4502900 2940700 5286500 3459600 3056800 2863500 3096000 3080100 2623600 4147000 194020 4601300 2830000 5287100 3463700 3221600 2946900 3022100 2964500 1 1 0 1 1 1 1 1 1 1 1 2818100 4444100 0 4502900 2940700 5286500 3459600 3056800 2863500 3096000 3080100 2623600 4147000 194020 4601300 2830000 5287100 3463700 3221600 2946900 3022100 2964500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 672270000 672270000 0 14002 2383 12825 73651 88918 88918 2721 1 MVSVLPIFR Oxidation (M) 1076.6052 0.60523691 2221 Q8NBF2;Q8NBF2-2 NHLRC2 NHL repeat-containing protein 2 yes no 0 0 1 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 66.731 66.354 2 0.0033074 22771 20211116_3430_TMUAki_TMT10x_P_F3 87.181 53.178 10089000 15838000 96832 15309000 12774000 19911000 11990000 16013000 16050000 14985000 14398000 9394300 14776000 934420 15724000 12233000 19913000 12329000 16446000 16092000 14678000 13940000 3 3 2 3 3 3 3 3 3 3 3 6951600 10673000 77822 10653000 8604900 16321000 8780500 10790000 10825000 10014000 9690400 6473000 9959100 642130 10954000 8257900 16153000 8960500 11226000 10882000 9812200 9383100 2 2 1 2 2 2 2 2 2 2 2 3137400 5164700 19009 4655800 4169500 3590100 3209900 5222500 5225700 4971300 4707600 2921400 4817400 292280 4769700 3974900 3759800 3368500 5220000 5209600 4865600 4557200 1 1 1 1 1 1 1 1 1 1 1 885780000 331970000 553800000 14003 2221 12826 73652;73653;73654 88919;88920;88921;88922 88921 2633 4 MVSVLPIFR Unmodified 1060.6103 0.61032229 2221 Q8NBF2;Q8NBF2-2 NHLRC2 NHL repeat-containing protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 76.548 76.537 2 1.4712E-05 24407 20211116_3444_TMUAki_TMT10x_S_F5 151.56 110.71 3863700 6118500 38706 5964200 4330800 7196000 4825100 3134000 3025800 3827600 4460800 3597800 5708600 362940 6113800 4167400 7163500 4812800 3412200 3207900 3709600 4258700 1 1 1 1 1 1 1 1 1 1 1 3863700 6118500 38706 5964200 4330800 7196000 4825100 3134000 3025800 3827600 4460800 3597800 5708600 362940 6113800 4167400 7163500 4812800 3412200 3207900 3709600 4258700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 377340000 288200000 89141000 14004 2221 12826 73655;73656;73657 88923;88924 88924 2 MVTVNDCDAKLK Carbamidomethyl (C) 1449.6956 0.69558484 1069 P48066 SLC6A11 Sodium- and chloride-dependent GABA transporter 3 yes yes 0 1 0 1 By MS/MS 2 0 1 1 70.246 69.963 3 0.10786 23741 20211116_3429_TMUAki_TMT10x_P_F2 42.031 10.845 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14005 1069 12827 73658 88925 88925 8 1 MVVDAVMMLDDLLQLK 3 Oxidation (M) 1880.9297 0.92974345 2609 Q99832;Q99832-3;Q99832-4 CCT7 T-complex protein 1 subunit eta yes no 0 0 3 0 By MS/MS By MS/MS 6.5 1.5 1 1 1 1 81.795 81.803 3 0.00039226 26581 20211116_3444_TMUAki_TMT10x_S_F5 71.344 53.206 807990 1196800 0 1037500 990200 1043200 1000300 1059800 1196500 1224600 1134700 752270 1116100 64303 1069800 949360 1062800 1020200 1081600 1206400 1189200 1096500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 807990 1196800 0 1037500 990200 1043200 1000300 1059800 1196500 1224600 1134700 752270 1116100 64303 1069800 949360 1062800 1020200 1081600 1206400 1189200 1096500 1 1 0 1 1 1 1 1 1 1 1 264480000 0 264480000 14006 2609 12828 73659;73660 88926;88927 88927 2850;2851;2852 2 MVVESAYEVIK Unmodified 1266.653 0.65297497 531 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 0 By MS/MS By MS/MS 4.56 1.77 5 4 4 4 5 5 15 12 64.88 64.841 2;3 1.3315E-23 20919 20211116_3442_TMUAki_TMT10x_S_F4 251.53 199.27 337280000 527080000 2275500 615490000 361550000 361600000 350120000 168200000 128580000 198350000 333910000 314030000 492160000 27300000 617860000 346320000 379690000 348880000 181670000 147790000 192470000 315760000 30 30 16 30 30 30 30 30 30 30 30 174210000 262560000 984710 306640000 210520000 250760000 203930000 84381000 63066000 99912000 162400000 162190000 245160000 13380000 308870000 201590000 255160000 202840000 94654000 73848000 96939000 153580000 14 14 7 14 14 14 14 14 14 14 14 163070000 264530000 1290800 308850000 151030000 110840000 146190000 83815000 65513000 98435000 171510000 151840000 247000000 13920000 308980000 144730000 124530000 146040000 87019000 73940000 95534000 162170000 16 16 9 16 16 16 16 16 16 16 16 42813000000 23335000000 19478000000 14007 531 12829 73661;73662;73663;73664;73665;73666;73667;73668;73669;73670;73671;73672;73673;73674;73675;73676;73677;73678;73679;73680;73681;73682;73683;73684;73685;73686;73687 88928;88929;88930;88931;88932;88933;88934;88935;88936;88937;88938;88939;88940;88941;88942;88943;88944;88945;88946;88947;88948;88949;88950;88951;88952;88953;88954;88955;88956;88957;88958;88959;88960;88961 88952 34 MVVESAYEVIK Oxidation (M) 1282.6479 0.64788959 531 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 1 0 By MS/MS By MS/MS 4.5 1.5 2 4 4 4 4 2 12 8 57.315 57.347 2;3 7.3044E-14 18651 20211116_3429_TMUAki_TMT10x_P_F2 150.81 128.68 137880000 227380000 1961400 240840000 204300000 265720000 159440000 216080000 212310000 192240000 197740000 128390000 212220000 13610000 245120000 194850000 268050000 165710000 221480000 213160000 188730000 191210000 31 31 24 31 31 31 31 31 31 31 31 84964000 135800000 1257100 145630000 147650000 215980000 114270000 128760000 124810000 114620000 117220000 79115000 126750000 8613300 148920000 140780000 213730000 117980000 134890000 126240000 112530000 113310000 19 19 14 19 19 19 19 19 19 19 19 52920000 91587000 704300 95211000 56656000 49740000 45174000 87319000 87499000 77615000 80523000 49278000 85474000 4996200 96195000 54072000 54321000 47733000 86593000 86916000 76202000 77893000 12 12 10 12 12 12 12 12 12 12 12 34003000000 19511000000 14492000000 14008 531 12829 73688;73689;73690;73691;73692;73693;73694;73695;73696;73697;73698;73699;73700;73701;73702;73703;73704;73705;73706;73707 88962;88963;88964;88965;88966;88967;88968;88969;88970;88971;88972;88973;88974;88975;88976;88977;88978;88979;88980;88981;88982;88983;88984;88985;88986;88987;88988;88989;88990;88991;88992;88993;88994;88995 88963 455 34 MVVNEGSDGGQSVYHVHLHVLGGR Oxidation (M) 2562.2398 0.23975313 1120 P49773 HINT1 Histidine triad nucleotide-binding protein 1 yes yes 0 0 1 0 By MS/MS By MS/MS 6.42 1.26 1 2 3 3 3 7 5 38.925 39.148 4;5 1.5903E-29 9528 20211116_3434_TMUAki_TMT10x_P_F6 172.3 160.88 19044000 31317000 249000 33320000 41553000 34071000 25227000 26411000 25237000 23300000 28262000 17731000 29229000 1664100 33861000 39426000 34490000 26443000 27147000 25781000 22884000 27170000 22 22 12 22 22 22 22 22 22 22 22 10723000 16982000 126700 19261000 31503000 27394000 16640000 15708000 15334000 14008000 15991000 9983900 15854000 990740 19610000 29829000 27143000 17615000 16510000 15680000 13751000 15405000 13 13 5 13 13 13 13 13 13 13 13 8320400 14335000 122290 14059000 10050000 6676600 8587800 10703000 9903500 9292600 12271000 7746800 13375000 673380 14251000 9596700 7347500 8828100 10637000 10102000 9133800 11764000 9 9 7 9 9 9 9 9 9 9 9 5827500000 4502400000 1325200000 14009 1120 12830 73708;73709;73710;73711;73712;73713;73714;73715;73716;73717;73718;73719 88996;88997;88998;88999;89000;89001;89002;89003;89004;89005;89006;89007;89008;89009;89010;89011;89012;89013;89014;89015;89016;89017 88997 1484 22 MVVNEGSDGGQSVYHVHLHVLGGR Unmodified 2546.2448 0.24483851 1120 P49773 HINT1 Histidine triad nucleotide-binding protein 1 yes yes 0 0 0 0 By matching By MS/MS 6.33 0.471 2 1 1 2 45.537 45.785 5 1.9955E-11 13998 20211116_3446_TMUAki_TMT10x_S_F7 112.32 104.52 5215700 8765500 38102 11256000 5039500 3688900 4140100 5754200 5480800 5600500 7223700 4856500 8188500 446060 11194000 4810600 4271200 4288000 5741600 5579000 5476100 6914500 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5215700 8765500 38102 11256000 5039500 3688900 4140100 5754200 5480800 5600500 7223700 4856500 8188500 446060 11194000 4810600 4271200 4288000 5741600 5579000 5476100 6914500 3 3 2 3 3 3 3 3 3 3 3 1441400000 318290000 1123100000 14010 1120 12830 73720;73721;73722 89018;89019;89020 89019 3 MVVPAALK Oxidation (M) 843.48881 0.48881017 983 P40429;Q6NVV1 RPL13A;RPL13AP3 60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3 yes no 0 0 1 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 44.289 44.578 2 0.012241 11368 20211116_3447_TMUAki_TMT10x_S_F8 86.512 47.694 11319000 18576000 118550 22035000 20827000 21619000 12651000 16625000 18368000 13646000 17114000 10539000 17346000 1068700 22229000 19764000 21938000 13437000 17066000 18391000 13450000 16548000 4 4 2 4 4 4 4 4 4 4 4 7098300 11342000 54973 13292000 17841000 18864000 10130000 10079000 11055000 8144300 10556000 6609000 10590000 710380 13506000 16911000 18676000 10707000 10633000 11188000 8033800 10199000 2 2 1 2 2 2 2 2 2 2 2 4220200 7233900 63577 8742700 2985700 2755300 2521500 6546300 7312600 5501500 6557900 3929600 6755700 358320 8722900 2852800 3261400 2730200 6433300 7202900 5416100 6349500 2 2 1 2 2 2 2 2 2 2 2 518100000 356870000 161230000 14011 983 12831 73723;73724;73725;73726 89021;89022;89023;89024 89024 1267 4 MVVPGLDGAQIPR Oxidation (M) 1367.7231 0.72312022 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 1 0 By MS/MS By MS/MS 5.75 0.433 1 3 2 2 53.103 53.238 2;3 3.6349E-11 15139 20211116_3445_TMUAki_TMT10x_S_F6 146.48 102.5 11741000 19041000 85424 19614000 15628000 18841000 12411000 14720000 15173000 14097000 14683000 10933000 17770000 1104800 19957000 14909000 19149000 12843000 15156000 15298000 13793000 14179000 4 4 3 4 4 4 4 4 4 4 4 6462000 10456000 29747 11072000 10939000 14382000 8167200 8453200 8612700 7927200 8199400 6017000 9759100 623480 11301000 10421000 14314000 8443100 8878100 8727800 7763800 7922500 2 2 1 2 2 2 2 2 2 2 2 5279000 8585000 55678 8541800 4688200 4458200 4244100 6267200 6560300 6169600 6483500 4915700 8010600 481280 8656000 4487400 4834200 4399900 6277800 6569900 6029600 6256700 2 2 2 2 2 2 2 2 2 2 2 1453700000 799940000 653790000 14012 1092 12832 73727;73728;73729;73730 89025;89026;89027;89028 89028 1431 4 MVVPGLDGAQIPR Unmodified 1351.7282 0.7282056 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 2 3 62.512 63.098 2 3.6062E-12 18846 20211116_3447_TMUAki_TMT10x_S_F8 129.88 80.341 13183000 22465000 207300 19424000 18493000 20290000 18284000 12292000 9534300 11669000 17047000 12276000 20951000 1360500 20043000 17739000 20437000 18286000 12882000 10349000 11422000 16212000 2 2 2 2 2 2 2 2 2 2 2 6667200 11829000 146400 9793500 9768800 14473000 11817000 6475800 4700400 6016400 9103600 6208900 11030000 732640 10205000 9427100 14275000 11659000 6974000 5249500 5894900 8645600 1 1 1 1 1 1 1 1 1 1 1 6515900 10637000 60893 9630500 8724200 5817400 6466700 5815800 4834000 5652500 7943400 6067400 9921300 627890 9838800 8312100 6161500 6626900 5908300 5099500 5527200 7566400 1 1 1 1 1 1 1 1 1 1 1 1410100000 672130000 737940000 14013 1092 12832 73731;73732;73733;73734;73735 89029;89030;89031;89032;89033 89033 5 MVVPGLDGAQIPRDPSQQELPR Oxidation (M) 2418.2325 0.23254249 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 1 1 By MS/MS By MS/MS 6 0 2 1 1 54.418 54.518 3 2.4936E-11 15646 20211116_3445_TMUAki_TMT10x_S_F6 120.32 105.39 18226000 30785000 440730 32142000 23159000 30302000 17290000 28094000 28797000 24233000 25592000 16973000 28731000 1593100 32667000 22085000 30933000 18201000 28560000 28679000 23826000 24787000 4 4 3 4 4 4 4 4 4 4 4 9103900 15000000 279470 15403000 12184000 20764000 10854000 12917000 12515000 11399000 12100000 8478700 13998000 1058400 15765000 11666000 20646000 11131000 13484000 12644000 11195000 11685000 2 2 2 2 2 2 2 2 2 2 2 9121700 15785000 161260 16740000 10975000 9538200 6435400 15177000 16282000 12834000 13492000 8494400 14733000 534690 16902000 10419000 10288000 7069900 15076000 16034000 12631000 13102000 2 2 1 2 2 2 2 2 2 2 2 2072700000 762920000 1309800000 14014 1092 12833 73736;73737 89034;89035;89036;89037 89036 1431 4 MVVPGLDGAQIPRDPSQQELPR Unmodified 2402.2376 0.23762787 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 61.222 61.633 3 2.2549E-55 18137 20211116_3434_TMUAki_TMT10x_P_F6 219.78 208.33 17908000 28489000 28464 30948000 18605000 20858000 17431000 12966000 10617000 12540000 18651000 16672000 26593000 1227600 31247000 17792000 21694000 17531000 13569000 11384000 12264000 17743000 6 6 1 6 6 6 6 6 6 6 6 11476000 17820000 0 19533000 11206000 16270000 12471000 8721400 7521700 8096700 11976000 10683000 16635000 657150 19757000 10758000 16606000 12430000 9229500 8026700 7933400 11415000 4 4 0 4 4 4 4 4 4 4 4 6432200 10669000 28464 11415000 7399000 4588200 4960300 4244900 3095300 4443000 6675200 5989200 9958000 570420 11491000 7034700 5087500 5101200 4339200 3357600 4331100 6328500 2 2 1 2 2 2 2 2 2 2 2 3272800000 2085700000 1187100000 14015 1092 12833 73738;73739;73740 89038;89039;89040;89041;89042;89043 89038 6 MVYSTCSLNPIEDEAVIASLLEK Oxidation (M) 2597.2605 0.26045631 1552 Q08J23;Q08J23-2;Q08J23-3 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 0 0 1 0 By MS/MS By MS/MS 3.2 0.98 2 3 2 3 81.523 81.516 3;4 2.7659E-11 27311 20211116_3431_TMUAki_TMT10x_P_F4 111.66 102.84 13594000 27664000 23978 15820000 22588000 36353000 25440000 30678000 26990000 27853000 25126000 12658000 25769000 838560 17282000 21728000 35640000 25704000 31393000 27324000 27319000 24296000 4 4 1 4 4 4 4 4 4 4 4 6462200 13303000 0 6934300 7663100 21419000 12344000 15432000 14083000 12806000 11210000 6016600 12390000 508080 7740600 7462500 20793000 12330000 15914000 14149000 12615000 10903000 1 1 0 1 1 1 1 1 1 1 1 7132300 14361000 23978 8885600 14925000 14934000 13096000 15246000 12907000 15047000 13916000 6640900 13380000 330470 9541900 14266000 14848000 13373000 15479000 13175000 14704000 13393000 3 3 1 3 3 3 3 3 3 3 3 2900500000 1649700000 1250800000 14016 1552 12834 73741;73742;73743;73744;73745 89044;89045;89046;89047 89044 2090 4 MVYSTCSLNPIEDEAVIASLLEK Unmodified 2581.2655 0.26554168 1552 Q08J23;Q08J23-2;Q08J23-3 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 5.8 1.17 1 1 1 2 2 3 82.205 82.219 3 6.8779E-28 29167 20211116_3446_TMUAki_TMT10x_S_F7 166.27 157.45 8875700 14037000 101970 13236000 9296300 11176000 10044000 5688300 5363400 7133800 9558900 8265000 13095000 836780 13529000 8938700 11390000 10004000 6103800 5810100 6907700 9091300 5 5 5 5 5 5 5 5 5 5 5 4530800 6856900 25837 6466800 4453900 7194600 4623200 3152800 3013900 3903100 4586800 4218800 6396700 398640 6635600 4276400 7193600 4630800 3432000 3192300 3781100 4376000 1 1 1 1 1 1 1 1 1 1 1 4344900 7180300 76132 6769200 4842400 3981900 5420600 2535500 2349600 3230600 4972100 4046100 6698400 438150 6893000 4662200 4195900 5373000 2671800 2617800 3126600 4715200 4 4 4 4 4 4 4 4 4 4 4 1112800000 607020000 505780000 14017 1552 12834 73746;73747;73748;73749;73750 89048;89049;89050;89051;89052;89053 89052 6 MWDLSSNQAIQIAQHDAPVK Oxidation (M) 2267.1005 0.10046569 1431 P78406 RAE1 mRNA export factor yes yes 0 0 1 0 By MS/MS 6 0 1 1 62.887 62.905 3 1.0815E-07 18746 20211116_3434_TMUAki_TMT10x_P_F6 97.271 87.741 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14018 1431 12835 73751 89054 89054 1934 1 MWDPHNDPNAQGDAFK Oxidation (M) 1857.774 0.77404617 560 P08621;P08621-2;P08621-3 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 0 0 1 0 By MS/MS 4 0 1 1 44.187 44.286 3 0.00011685 12080 20211116_3431_TMUAki_TMT10x_P_F4 79.346 72.766 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14019 560 12836 73752 89055 89055 522 1 MWSIENIAFGSGGGLLQK Unmodified 1906.9611 0.96111866 1031 P43490 NAMPT Nicotinamide phosphoribosyltransferase yes yes 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 80.087 80.043 3 0.00019602 28271 20211116_3430_TMUAki_TMT10x_P_F3 67.252 36.172 1110000 1804400 7170.4 1668300 1163800 1844100 1028800 904040 886230 1012900 1333800 1033600 1683200 99460 1714200 1112900 1846600 1046200 969860 923710 984760 1272800 1 1 1 1 1 1 1 1 1 1 1 1110000 1804400 7170.4 1668300 1163800 1844100 1028800 904040 886230 1012900 1333800 1033600 1683200 99460 1714200 1112900 1846600 1046200 969860 923710 984760 1272800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1388300000 1388300000 0 14020 1031 12837 73753;73754 89056 89056 1 MYEEHLK Oxidation (M) 964.43242 0.43241751 1454 P84090 ERH Enhancer of rudimentary homolog yes yes 0 0 1 0 By MS/MS 4 0 1 1 31.57 31.6 3 0.010983 6991 20211116_3431_TMUAki_TMT10x_P_F4 80.098 41.126 1037300 1663200 0 1633700 1568200 1597100 1150000 726970 738800 792260 1198800 965830 1551900 93314 1668100 1493200 1609800 1175600 785000 785920 771070 1142200 1 1 0 1 1 1 1 1 1 1 1 1037300 1663200 0 1633700 1568200 1597100 1150000 726970 738800 792260 1198800 965830 1551900 93314 1668100 1493200 1609800 1175600 785000 785920 771070 1142200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 98515000 98515000 0 14021 1454 12838 73755 89057 89057 1957 1 MYEEHLK Unmodified 948.4375 0.43750288 1454 P84090 ERH Enhancer of rudimentary homolog yes yes 0 0 0 0 By MS/MS 4 0 1 1 34.793 34.818 3 0.042886 8322 20211116_3431_TMUAki_TMT10x_P_F4 50.966 31.489 1629200 2565500 0 3206900 5384000 3448800 2254700 1416000 1244400 1463900 1933800 1516700 2396200 157820 3229900 5081800 3452800 2419400 1543700 1334600 1427800 1844100 1 1 0 1 1 1 1 1 1 1 1 1629200 2565500 0 3206900 5384000 3448800 2254700 1416000 1244400 1463900 1933800 1516700 2396200 157820 3229900 5081800 3452800 2419400 1543700 1334600 1427800 1844100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 74461000 74461000 0 14022 1454 12838 73756 89058 89058 1 MYEEHLKR Oxidation (M) 1120.5335 0.53352853 1454 P84090 ERH Enhancer of rudimentary homolog yes yes 0 0 1 1 By MS/MS 4.33 0.471 2 1 3 28.168 28.177 3;4 0.0078995 5588 20211116_3431_TMUAki_TMT10x_P_F4 74.301 55.525 633090 1096200 15654 816470 919790 1410700 842740 863560 900920 814100 846460 589590 1021800 71092 861570 880950 1388200 860650 904140 912050 797130 818240 3 3 3 3 3 3 3 3 3 3 3 633090 1096200 15654 816470 919790 1410700 842740 863560 900920 814100 846460 589590 1021800 71092 861570 880950 1388200 860650 904140 912050 797130 818240 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 47320000 47320000 0 14023 1454 12839 73757;73758;73759 89059;89060;89061 89060 1957 3 MYKEEGLK Unmodified 996.49502 0.49501776 1466 Q00325-2;Q00325 SLC25A3 Phosphate carrier protein, mitochondrial yes no 0 0 0 1 By MS/MS 6 0 1 1 37.502 37.498 3 0.048205 8469 20211116_3434_TMUAki_TMT10x_P_F6 50.194 30.558 760350 1203200 22279 1191400 1177800 968070 813780 403060 407060 404970 737220 708120 1122700 89647 1212900 1121500 987280 831900 438370 443630 395440 700950 1 1 1 1 1 1 1 1 1 1 1 760350 1203200 22279 1191400 1177800 968070 813780 403060 407060 404970 737220 708120 1122700 89647 1212900 1121500 987280 831900 438370 443630 395440 700950 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38705000 38705000 0 14024 1466 12840 73760 89062 89062 1 MYSHPLHNDPNLETVYTLCEK Oxidation (M) 2576.1676 0.16755897 1010 P42285 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 0 0 1 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 49.965 50.136 4 3.8419E-05 13883 20211116_3445_TMUAki_TMT10x_S_F6 74.698 66.098 2659400 5297700 35328 5178200 3837500 5263700 3317600 5256600 4735400 4522000 4126400 2476300 4942900 259340 5292300 3667900 5356900 3436300 5322900 4733800 4446700 3999500 2 2 1 2 2 2 2 2 2 2 2 1274800 2504300 0 2373500 2243400 3484300 1917300 2491300 2236400 2136000 1750500 1186900 2336200 108690 2447200 2142200 3458700 1971700 2572500 2243900 2100700 1703700 1 1 0 1 1 1 1 1 1 1 1 1384600 2793500 35328 2804700 1594100 1779500 1400300 2765300 2499100 2386000 2375900 1289500 2606700 150650 2845100 1525700 1898200 1464600 2750400 2489900 2345900 2295800 1 1 1 1 1 1 1 1 1 1 1 719640000 375060000 344580000 14025 1010 12841 73761;73762 89063;89064 89064 1305 2 MYSTDDGVQFHAFGR Oxidation (M) 1745.7468 0.74676879 1757 Q15029;Q15029-2;Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 1 0 By MS/MS By MS/MS 4.5 0.957 1 2 2 1 2 4 46.325 46.401 3 9.7123E-11 12080 20211116_3444_TMUAki_TMT10x_S_F5 139.77 125.51 11501000 20053000 204850 21696000 19168000 18886000 12993000 19749000 19303000 15352000 18090000 10710000 18718000 1235900 21976000 18235000 19433000 13697000 19904000 19318000 15175000 17489000 6 6 5 6 6 6 6 6 6 6 6 4786900 8396500 80431 8884700 12710000 13147000 7672700 8268000 8256900 6468200 7323900 4457700 7836600 582800 9093100 12066000 13020000 8064200 8598700 8341300 6391300 7094000 2 2 2 2 2 2 2 2 2 2 2 6714300 11656000 124420 12812000 6457700 5739300 5319900 11481000 11046000 8883600 10766000 6252400 10881000 653090 12883000 6169800 6412000 5632900 11305000 10977000 8783200 10395000 4 4 3 4 4 4 4 4 4 4 4 2643900000 1489400000 1154500000 14026 1757 12842 73763;73764;73765;73766;73767;73768 89065;89066;89067;89068;89069;89070 89069 2372 6 MYSTDDGVQFHAFGR Unmodified 1729.7519 0.75185416 1757 Q15029;Q15029-2;Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 52.179 52.318 3 2.4542E-19 14387 20211116_3434_TMUAki_TMT10x_P_F6 161.87 151.38 7228500 13057000 96831 13318000 10356000 11552000 7864100 9595900 9683400 8917500 11617000 6731000 12184000 713340 13542000 9871900 11834000 8163500 9834900 9840200 8737300 11147000 3 3 2 3 3 3 3 3 3 3 3 2566800 4874900 0 4955200 5965000 6953800 4099400 3588100 4306100 3102100 4711700 2389800 4549100 240400 5079300 5671400 6885100 4262200 3803400 4386000 3049700 4532700 1 1 0 1 1 1 1 1 1 1 1 4661700 8182000 96831 8362600 4391100 4598600 3764700 6007900 5377300 5815400 6905500 4341200 7635300 472940 8462200 4200500 4948600 3901400 6031500 5454100 5687600 6614200 2 2 2 2 2 2 2 2 2 2 2 929120000 420890000 508230000 14027 1757 12842 73769;73770;73771 89071;89072;89073 89071 3 MYSYPAR Oxidation (M) 902.39564 0.39563807 545 P07910-2;P07910-4;P07910;P07910-3 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 0 0 1 0 By MS/MS 4.5 0.5 1 1 2 31.231 31.216 2 0.10488 7144 20211116_3433_TMUAki_TMT10x_P_F5 60.648 37.629 1139300 1959900 7021.8 1632400 2145900 2278200 1428800 1068900 1189700 1068800 1477200 1060900 1827600 115100 1698100 2040000 2253900 1479400 1147900 1231000 1043900 1416100 2 2 2 2 2 2 2 2 2 2 2 1139300 1959900 7021.8 1632400 2145900 2278200 1428800 1068900 1189700 1068800 1477200 1060900 1827600 115100 1698100 2040000 2253900 1479400 1147900 1231000 1043900 1416100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 48350000 48350000 0 14028 545 12843 73772;73773 89074 89074 492 1 MYSYPAR Unmodified 886.40072 0.40072345 545 P07910-2;P07910-4;P07910;P07910-3 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 31.772 31.949 2 0.03722 8261 20211116_3435_TMUAki_TMT10x_P_F7 70.912 18.229 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14029 545 12843 73774;73775 89075;89076 89076 2 MYSYVTEELPQLINANFPVDPQR Oxidation (M) 2739.3214 0.32141708 612 P10768 ESD S-formylglutathione hydrolase yes yes 0 0 1 0 By MS/MS By MS/MS 6.88 1.05 1 2 2 3 4 4 69.884 69.883 3 7.4763E-28 25701 20211116_3444_TMUAki_TMT10x_S_F5 164.94 150.78 9326600 15042000 98865 14326000 10506000 13460000 12556000 10100000 10235000 9459200 13068000 8683600 14033000 440780 14653000 10122000 13691000 12557000 10419000 10614000 9264700 12519000 10 10 3 10 10 10 10 10 10 10 10 3862300 6414100 53923 5924600 3199300 7203400 5262100 3974300 4337900 3472000 5618600 3596600 5983200 137200 6097800 3122800 7186900 5201100 4188800 4499000 3411600 5380400 4 4 1 4 4 4 4 4 4 4 4 5464300 8627600 44941 8401600 7306800 6257100 7293600 6125500 5896900 5987200 7449400 5087000 8049700 303580 8554900 6999700 6503600 7355600 6230500 6115300 5853100 7138100 6 6 2 6 6 6 6 6 6 6 6 12057000000 5147700000 6909000000 14030 612 12844 73776;73777;73778;73779;73780;73781;73782;73783 89077;89078;89079;89080;89081;89082;89083;89084;89085;89086 89081 594 10 MYSYVTEELPQLINANFPVDPQR Unmodified 2723.3265 0.32650246 612 P10768 ESD S-formylglutathione hydrolase yes yes 0 0 0 0 By matching By MS/MS 7 0 2 1 1 81.023 81.05 3 0.0011341 28695 20211116_3446_TMUAki_TMT10x_S_F7 59.918 52.472 2242400 3679700 18323 2872800 2552300 2185500 3090100 1393900 1404100 1738200 2445000 2088100 3430600 207330 2977400 2461900 2251000 3054100 1467400 1539200 1683400 2326400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2242400 3679700 18323 2872800 2552300 2185500 3090100 1393900 1404100 1738200 2445000 2088100 3430600 207330 2977400 2461900 2251000 3054100 1467400 1539200 1683400 2326400 1 1 1 1 1 1 1 1 1 1 1 854800000 353990000 500820000 14031 612 12844 73784;73785 89087 89087 1 MYVPALIFGQLLTSSNYDDDEK Oxidation (M) 2534.1887 0.18867157 625 P11388;P11388-2;P11388-3;P11388-4 TOP2A DNA topoisomerase 2-alpha yes no 0 0 1 0 By MS/MS By MS/MS 7.17 0.687 1 3 2 3 3 81.294 81.307 3;4 9.1699E-27 26933 20211116_3436_TMUAki_TMT10x_P_F8 168.09 154.25 19901000 34283000 195620 27840000 21192000 33782000 22907000 20950000 27365000 26014000 25951000 18530000 31966000 1555100 28945000 20372000 33760000 23284000 22100000 27594000 25198000 25078000 10 10 6 10 10 10 10 10 10 10 10 11082000 17960000 168250 14949000 9220800 22350000 10789000 11617000 15063000 14347000 14217000 10319000 16747000 1049500 15573000 8891000 22071000 10994000 12435000 15107000 13900000 13741000 5 5 5 5 5 5 5 5 5 5 5 8818800 16323000 27374 12891000 11971000 11432000 12117000 9332800 12302000 11667000 11734000 8211000 15218000 505650 13372000 11481000 11689000 12289000 9664700 12487000 11298000 11337000 5 5 1 5 5 5 5 5 5 5 5 4224800000 2127900000 2096900000 14032 625 12845 73786;73787;73788;73789;73790;73791 89088;89089;89090;89091;89092;89093;89094;89095;89096;89097 89092 644 10 MYVPALIFGQLLTSSNYDDDEK Unmodified 2518.1938 0.19375695 625 P11388;P11388-2;P11388-3;P11388-4 TOP2A DNA topoisomerase 2-alpha yes no 0 0 0 0 By MS/MS By MS/MS 7 0.894 2 1 2 2 3 82.783 82.791 3 2.8914E-35 29402 20211116_3446_TMUAki_TMT10x_S_F7 185.28 173.32 1203700 1821100 13350 1705200 1136700 1011500 1264300 605070 621920 821160 1170800 1120900 1698900 109010 1737400 1093800 1064100 1255900 642170 680280 793080 1112500 3 3 2 3 3 3 3 3 3 3 3 308120 423050 9909.4 449180 252290 384610 298610 166520 170830 236040 325230 286970 394850 33999 455430 243670 390900 296510 182390 184860 227660 308960 1 1 1 1 1 1 1 1 1 1 1 895590 1398100 3441 1256000 884430 626880 965670 438550 451090 585120 845590 833890 1304000 75009 1282000 850140 673200 959350 459780 495420 565420 803500 2 2 1 2 2 2 2 2 2 2 2 223710000 52186000 171530000 14033 625 12845 73792;73793;73794;73795;73796 89098;89099;89100 89099 3 NAAEELKPR Unmodified 1026.5458 0.54580778 1431 P78406 RAE1 mRNA export factor yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 32.394 32.379 3 0.0044793 7339 20211116_3431_TMUAki_TMT10x_P_F4 72.652 25.761 857500 1293500 3166.8 1197700 1412100 1648900 1008400 871880 989240 796810 1125700 798440 1206600 81812 1235400 1344000 1634500 1043400 923430 1012100 781300 1081700 1 1 1 1 1 1 1 1 1 1 1 857500 1293500 3166.8 1197700 1412100 1648900 1008400 871880 989240 796810 1125700 798440 1206600 81812 1235400 1344000 1634500 1043400 923430 1012100 781300 1081700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 132170000 132170000 0 14034 1431 12846 73797;73798 89101 89101 1 NAAHALPTTLGALER Unmodified 1533.8263 0.82633974 2222 Q8NBJ5 COLGALT1 Procollagen galactosyltransferase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 44.42 44.696 3 3.2368E-06 11273 20211116_3434_TMUAki_TMT10x_P_F6 101.75 78.325 7880100 12968000 275450 14253000 15413000 17242000 11240000 11696000 11601000 10108000 11988000 7339100 12105000 1008300 14495000 14690000 17256000 11631000 12124000 11800000 9937100 11553000 7 7 5 7 7 7 7 7 7 7 7 6154700 9974900 224450 10957000 13682000 15605000 9676400 9383400 9292700 8095800 9510100 5732300 9311400 817680 11178000 13032000 15471000 10013000 9815800 9478300 7959900 9167300 5 5 3 5 5 5 5 5 5 5 5 1725300 2992900 50997 3296700 1730200 1637300 1563600 2312600 2308700 2011800 2478400 1606800 2793900 190640 3316900 1657900 1785500 1617800 2308200 2322100 1977200 2385600 2 2 2 2 2 2 2 2 2 2 2 1346600000 793180000 553430000 14035 2222 12847 73799;73800;73801;73802;73803 89102;89103;89104;89105;89106;89107;89108 89103 7 NAAIAVLEELKK Unmodified 1297.7606 0.76055158 445 O95793;O95793-2;O95793-3 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes no 0 0 0 1 By MS/MS 8 0 1 1 71.453 71.516 3 2.5214E-12 22910 20211116_3436_TMUAki_TMT10x_P_F8 137.68 94.299 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14036 445 12848 73804 89109 89109 1 NAALNTIVTVYNVHGDQVFK Unmodified 2202.1433 0.14331678 1672 Q14008;Q14008-2;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 By MS/MS 8 0 1 1 69.883 69.715 3 1.7232E-24 21662 20211116_3447_TMUAki_TMT10x_S_F8 164.59 154.25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14037 1672 12849 73805 89110 89110 1 NAAQELATLLLSLPAPASVQQQSK Unmodified 2477.349 0.34895246 1939 Q5T4S7;Q5T4S7-3;Q5T4S7-4;Q5T4S7-2 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 0 0 By MS/MS By MS/MS 3.09 0.793 3 4 4 5 6 82.279 82.262 3;4 8.8058E-23 28023 20211116_3442_TMUAki_TMT10x_S_F4 153.83 139.52 6039000 9438200 61144 8960800 7077600 8605700 7465900 5716900 5736000 6608500 8155600 5622900 8805100 451040 9169900 6796700 8723900 7499100 5985000 5997000 6417500 7792500 9 9 4 9 9 9 9 9 9 9 9 3043100 4911300 36033 4541100 2925900 5769100 3557100 3189100 3007200 3407200 4156400 2833600 4581300 262160 4677100 2822100 5743400 3558100 3379200 3124100 3318700 3974000 5 5 3 5 5 5 5 5 5 5 5 2995800 4526900 25111 4419700 4151700 2836600 3908800 2527800 2728800 3201300 3999200 2789400 4223700 188870 4492800 3974500 2980500 3941000 2605900 2872800 3098800 3818500 4 4 1 4 4 4 4 4 4 4 4 3176000000 1010600000 2165400000 14038 1939 12850 73806;73807;73808;73809;73810;73811;73812;73813;73814;73815;73816 89111;89112;89113;89114;89115;89116;89117;89118;89119 89119 9 NAAQFLLSTNDK Unmodified 1320.6674 0.66737948 1397 P63151;P63151-2 PPP2R2A Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform yes no 0 0 0 0 By MS/MS 7 0 1 1 58.898 59.414 3 0.0052535 19676 20211116_3446_TMUAki_TMT10x_S_F7 61.532 45 5133600 8819400 94089 9090300 6242500 4870100 4911700 7072400 6202900 6479700 7180400 4780600 8230500 528830 9191400 5957800 5271200 5091700 7061900 6288500 6352800 6896400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5133600 8819400 94089 9090300 6242500 4870100 4911700 7072400 6202900 6479700 7180400 4780600 8230500 528830 9191400 5957800 5271200 5091700 7061900 6288500 6352800 6896400 2 2 2 2 2 2 2 2 2 2 2 326810000 0 326810000 14039 1397 12851 73817 89120;89121 89120 2 NAAQVLVGIPLETGQK Unmodified 1636.9148 0.91482039 2659 Q9BT78;Q9BT78-2 COPS4 COP9 signalosome complex subunit 4 yes no 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 2 3 68.481 68.619 3 3.057E-15 23465 20211116_3446_TMUAki_TMT10x_S_F7 149.3 131.93 26472000 43669000 366410 40796000 29978000 42573000 31936000 32176000 31223000 32804000 35770000 24651000 40737000 2569900 41849000 28815000 43027000 32270000 33257000 31957000 32013000 34365000 7 7 6 7 7 7 7 7 7 7 7 13204000 20148000 57473 19242000 14564000 27179000 16233000 15848000 16338000 16697000 18644000 12294000 18797000 1151900 19813000 14010000 26944000 16381000 16711000 16698000 16272000 17914000 3 3 2 3 3 3 3 3 3 3 3 13268000 23521000 308940 21554000 15414000 15394000 15704000 16327000 14886000 16107000 17126000 12356000 21940000 1418000 22036000 14805000 16083000 15889000 16547000 15259000 15740000 16452000 4 4 4 4 4 4 4 4 4 4 4 4092100000 2115200000 1977000000 14040 2659 12852 73818;73819;73820;73821;73822 89122;89123;89124;89125;89126;89127;89128 89126 7 NACDHLSGFNVCNR Unmodified 1662.6991 0.69910709 3269 Q9Y3B4 SF3B6 Splicing factor 3B subunit 6 yes yes 0 0 0 0 By MS/MS 1 0 1 1 35.817 35.783 3 1.6537E-06 10268 20211116_3439_TMUAki_TMT10x_S_F1 111.66 105 167020 292900 0 341040 141010 136870 135360 251880 270530 201870 279350 155500 273490 11949 341470 134970 154610 141780 248790 269620 199220 269210 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 167020 292900 0 341040 141010 136870 135360 251880 270530 201870 279350 155500 273490 11949 341470 134970 154610 141780 248790 269620 199220 269210 1 1 0 1 1 1 1 1 1 1 1 17810000 0 17810000 14041 3269 12853 73823 89129 89129 1 NACIECSVNQNSIR Unmodified 1663.7406 0.74063755 3073 Q9UBB4 ATXN10 Ataxin-10 yes yes 0 0 0 0 By MS/MS 4 0 1 1 36.888 36.918 3 2.753E-05 9139 20211116_3431_TMUAki_TMT10x_P_F4 98.654 91.925 1136700 1785000 10978 2176100 2371300 2134900 1678400 1001300 1101000 753910 1481600 1058500 1667100 121760 2191700 2257000 2152000 1720800 1067900 1158900 746500 1417500 1 1 1 1 1 1 1 1 1 1 1 1136700 1785000 10978 2176100 2371300 2134900 1678400 1001300 1101000 753910 1481600 1058500 1667100 121760 2191700 2257000 2152000 1720800 1067900 1158900 746500 1417500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 260980000 260980000 0 14042 3073 12854 73824 89130 89130 1 NADDDRIPR Unmodified 1070.5105 0.51048491 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 1 By MS/MS By matching 2.5 0.5 1 1 1 1 27.001 26.74 3 0.007306 6166 20211116_3429_TMUAki_TMT10x_P_F2 63.426 44.696 210920 378680 7768.5 319910 295490 492900 286920 250380 385670 281420 313360 196450 353130 25911 333100 283590 486010 294540 267740 385470 273570 304530 1 1 1 1 1 1 1 1 1 1 1 210920 378680 7768.5 319910 295490 492900 286920 250380 385670 281420 313360 196450 353130 25911 333100 283590 486010 294540 267740 385470 273570 304530 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4593600 2669600 1924000 14043 1684 12855 73825;73826 89131 89131 1 NADELVK Unmodified 787.40758 0.40758296 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 37.515 37.258 2 0.0049216 11892 20211116_3441_TMUAki_TMT10x_S_F3 111.04 69.058 1162500 1941400 0 1604900 1381000 1099000 1434800 1177000 1196400 1093300 1572200 1082300 1810200 83658 1653500 1324400 1152600 1445100 1190300 1240900 1071200 1505100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1162500 1941400 0 1604900 1381000 1099000 1434800 1177000 1196400 1093300 1572200 1082300 1810200 83658 1653500 1324400 1152600 1445100 1190300 1240900 1071200 1505100 1 1 0 1 1 1 1 1 1 1 1 40721000 0 40721000 14044 712 12856 73827;73828 89132;89133 89133 2 NADGLIVASR Unmodified 1014.5458 0.54580778 3139 Q9UJA5;Q9UJA5-4 TRMT6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 35.967 36.028 2 0.0016857 9700 20211116_3430_TMUAki_TMT10x_P_F3 85.963 54.092 361200 587060 7042.9 659700 529340 445290 387800 357840 393120 373920 478190 336340 548070 36704 664660 504290 464890 400930 368720 402720 364530 458660 3 3 2 3 3 3 3 3 3 3 3 125000 204780 3774.8 220320 255830 247550 143270 129560 138980 127710 164130 116400 191140 13553 224070 242560 247860 151080 137620 142470 124800 157550 2 2 1 2 2 2 2 2 2 2 2 236200 382280 3268.2 439380 273510 197730 244530 228290 254140 246210 314070 219950 356920 23151 440590 261730 217030 249850 231100 260250 239730 301110 1 1 1 1 1 1 1 1 1 1 1 23170000 2731000 20439000 14045 3139 12857 73829;73830 89134;89135;89136 89134 3 NADMSEDMQQDAVDCATQAMEK 3 Oxidation (M) 2534.9506 0.95056784 2461 Q96FJ2 DYNLL2 Dynein light chain 2, cytoplasmic yes yes 0 0 3 0 By MS/MS 2 0 1 1 40.005 39.745 4 0.0053943 11436 20211116_3429_TMUAki_TMT10x_P_F2 49.106 46.182 379290 631150 0 693140 974470 1151100 667630 634260 818520 594060 674820 353130 589170 36558 709590 926440 1132800 697920 669750 821010 581840 655420 1 1 0 1 1 1 1 1 1 1 1 379290 631150 0 693140 974470 1151100 667630 634260 818520 594060 674820 353130 589170 36558 709590 926440 1132800 697920 669750 821010 581840 655420 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 96050000 96050000 0 14046 2461 12858 73831 89137 89137 2758;2759;2760 1 NADMSEEMQQDSVECATQALEK 2 Oxidation (M) 2545.0254 0.025447346 1399 P63167 DYNLL1 Dynein light chain 1, cytoplasmic yes yes 0 0 2 0 By MS/MS By MS/MS 2 0.853 4 3 4 5 6 53.838 53.625 3;4 1.9319E-19 17497 20211116_3439_TMUAki_TMT10x_S_F1 142.63 127.37 21901000 39601000 150740 35422000 28529000 45462000 25296000 50986000 53197000 40156000 39695000 20392000 36937000 1892100 36581000 27273000 45819000 26692000 51236000 52419000 39664000 38711000 18 18 10 18 18 18 18 18 18 18 18 11012000 18642000 106680 16850000 17937000 33548000 16822000 24154000 25982000 19343000 19186000 10253000 17389000 1017700 17566000 17171000 32935000 17406000 24888000 25790000 19090000 18718000 8 8 4 8 8 8 8 8 8 8 8 10889000 20959000 44057 18572000 10593000 11915000 8474000 26832000 27215000 20813000 20510000 10139000 19548000 874410 19015000 10102000 12884000 9286500 26348000 26628000 20575000 19993000 10 10 6 10 10 10 10 10 10 10 10 6541000000 4301800000 2239200000 14047 1399 12859 73832;73833;73834;73835;73836;73837;73838;73839;73840;73841;73842 89138;89139;89140;89141;89142;89143;89144;89145;89146;89147;89148;89149;89150;89151;89152;89153;89154;89155 89146 1876;1877 18 NADMSEEMQQDSVECATQALEK Oxidation (M) 2529.0305 0.030532724 1399 P63167 DYNLL1 Dynein light chain 1, cytoplasmic yes yes 0 0 1 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 60.601 60.459 3 2.7102E-17 21314 20211116_3441_TMUAki_TMT10x_S_F3 126.62 119.17 14682000 28456000 209440 25722000 15658000 25715000 16282000 14789000 14715000 16397000 18049000 13671000 26542000 1411500 26434000 15041000 25952000 16434000 15636000 15157000 15948000 17308000 5 5 4 5 5 5 5 5 5 5 5 7117200 13788000 106420 12393000 7941200 18238000 9066400 8215300 8089300 8808900 8562500 6627600 12860000 700780 12829000 7649100 17994000 9107300 8876300 8289000 8578700 8245300 2 2 2 2 2 2 2 2 2 2 2 7564400 14668000 103030 13329000 7716900 7477400 7215500 6573900 6625700 7588000 9486900 7043800 13682000 710690 13605000 7392000 7958100 7327000 6759800 6867900 7369000 9063100 3 3 2 3 3 3 3 3 3 3 3 3100900000 2000200000 1100700000 14048 1399 12859 73843;73844;73845;73846 89156;89157;89158;89159;89160;89161;89162 89162 1876;1877 7 NADMSEEMQQDSVECATQALEK Unmodified 2513.0356 0.035618102 1399 P63167 DYNLL1 Dynein light chain 1, cytoplasmic yes yes 0 0 0 0 By MS/MS By MS/MS 1.4 0.49 3 2 2 3 67.31 67.122 3;4 1.4876E-35 22588 20211116_3429_TMUAki_TMT10x_P_F2 192.09 183.9 48473000 91601000 849540 88170000 53861000 56128000 54094000 37402000 35594000 38456000 59057000 45137000 85461000 3886500 89712000 51681000 58735000 54285000 39004000 37853000 37515000 56244000 10 10 5 10 10 10 10 10 10 10 10 17039000 33873000 542400 32298000 21108000 34043000 27109000 15637000 15118000 15949000 22254000 15869000 31602000 1908300 33087000 20418000 34160000 26813000 16837000 16158000 15564000 21247000 3 3 2 3 3 3 3 3 3 3 3 31434000 57728000 307150 55872000 32753000 22085000 26985000 21764000 20476000 22507000 36804000 29268000 53859000 1978200 56625000 31262000 24576000 27472000 22167000 21695000 21951000 34998000 7 7 3 7 7 7 7 7 7 7 7 5001000000 2106000000 2895000000 14049 1399 12859 73847;73848;73849;73850;73851 89163;89164;89165;89166;89167;89168;89169;89170;89171;89172 89165 10 NAEALAELSESLR Unmodified 1401.71 0.70997257 2783 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like yes yes 0 0 0 0 By MS/MS 3 0 1 1 66.668 66.206 2 2.4782E-05 23766 20211116_3441_TMUAki_TMT10x_S_F3 92.295 73.515 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14050 2783 12860 73852 89173 89173 1 NAEDVQHQILATESSNQEYVR Unmodified 2430.1411 0.14114453 321 O75330;O75330-2;O75330-3;O75330-4 HMMR Hyaluronan mediated motility receptor yes no 0 0 0 0 By matching By MS/MS 3 0 2 1 1 49.803 49.587 3 2.2781E-19 16978 20211116_3441_TMUAki_TMT10x_S_F3 148.2 113.8 495170 922110 5613.5 1001800 441980 480620 349200 968770 1117800 827080 784530 461090 860720 45539 1008500 421800 532730 382850 956100 1091700 813600 767130 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 495170 922110 5613.5 1001800 441980 480620 349200 968770 1117800 827080 784530 461090 860720 45539 1008500 421800 532730 382850 956100 1091700 813600 767130 1 1 1 1 1 1 1 1 1 1 1 250270000 129700000 120570000 14051 321 12861 73853;73854 89174 89174 1 NAEPLINLDVNNPDFK Unmodified 1811.9054 0.90537792 3220 Q9Y224 C14orf166 UPF0568 protein C14orf166 yes yes 0 0 0 0 By MS/MS 5 0 1 1 70.472 70.548 3 0.00014816 23066 20211116_3433_TMUAki_TMT10x_P_F5 79.326 65.913 1868700 3431900 42175 3027300 2104300 4224500 2433800 2271100 2469200 2493200 2440900 1740300 3200800 197530 3134800 2028500 4185900 2452600 2414300 2509500 2425800 2355600 1 1 1 1 1 1 1 1 1 1 1 1868700 3431900 42175 3027300 2104300 4224500 2433800 2271100 2469200 2493200 2440900 1740300 3200800 197530 3134800 2028500 4185900 2452600 2414300 2509500 2425800 2355600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 415200000 415200000 0 14052 3220 12862 73855 89175 89175 1 NAEQNGPVDGQGDNPGPQAAEQGTDTAVPSDSDK Unmodified 3365.4516 0.45159222 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 42.329 42.18 4 4.0856E-24 12882 20211116_3439_TMUAki_TMT10x_S_F1 138.84 132.12 1769600 2394200 6023.3 5448500 10098000 8062000 3711100 4000900 7094800 2255800 4769400 1647500 2245500 245570 5381700 9520300 7960600 4203000 4220600 6987200 2275000 4672900 5 5 3 5 5 5 5 5 5 5 5 1376300 1777000 5315 3880400 9928200 7911900 3550800 2866400 5195500 1677200 3483400 1281400 1665900 221100 3870300 9358500 7698100 3986100 3133400 5152800 1687000 3413300 3 3 2 3 3 3 3 3 3 3 3 393300 617240 708.31 1568100 169370 150080 160250 1134500 1899400 578590 1286000 366160 579510 24469 1511400 161850 262480 216860 1087100 1834400 587980 1259600 2 2 1 2 2 2 2 2 2 2 2 940630000 733290000 207340000 14053 916 12863 73856;73857;73858;73859;73860 89176;89177;89178;89179;89180 89179 5 NAESNAELK Unmodified 974.46689 0.46688876 721 P18621;P18621-3;P18621-2 RPL17 60S ribosomal protein L17 yes no 0 0 0 0 By MS/MS 3 0 1 1 31.906 31.661 2 2.9166E-05 9685 20211116_3441_TMUAki_TMT10x_S_F3 133.23 90.103 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14054 721 12864 73861 89181 89181 1 NAFACFDEEATGTIQEDYLR Unmodified 2349.0219 0.021940594 145 O14950;P19105 MYL12B;MYL12A Myosin regulatory light chain 12B;Myosin regulatory light chain 12A yes no 0 0 0 0 By MS/MS By MS/MS 1.4 0.49 3 2 1 4 82.313 82.275 2;3 1.5286E-15 27093 20211116_3439_TMUAki_TMT10x_S_F1 128.71 128.35 17858000 30285000 305440 28716000 20698000 23324000 23497000 17176000 17232000 17936000 21029000 16629000 28253000 1777600 29325000 19934000 23956000 23493000 17797000 17940000 17486000 20169000 6 6 4 6 6 6 6 6 6 6 6 3672300 6172300 167330 5821200 3524700 7514100 5008800 3641700 3752400 4139800 4671300 3420500 5758100 458340 5988700 3427100 7463500 4964100 3913000 3905000 4022600 4477700 1 1 1 1 1 1 1 1 1 1 1 14186000 24112000 138110 22894000 17174000 15810000 18488000 13535000 13480000 13796000 16358000 13209000 22495000 1319300 23336000 16507000 16492000 18529000 13884000 14035000 13463000 15691000 5 5 3 5 5 5 5 5 5 5 5 1845800000 687260000 1158500000 14055 145 12865 73862;73863;73864;73865;73866 89182;89183;89184;89185;89186;89187;89188 89186 7 NAFVTGIAR Unmodified 947.51886 0.51886475 2060 Q7L576;Q96F07;Q96F07-2 CYFIP1;CYFIP2 Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2 yes no 0 0 0 0 By MS/MS 1 0 1 1 42.434 42.252 2 0.061747 12950 20211116_3439_TMUAki_TMT10x_S_F1 53.317 35.622 1053900 1943800 0 2106900 1146900 1042900 1033300 1555400 1495300 1358700 1749700 981240 1814300 87675 2121900 1096800 1139600 1068400 1549600 1510000 1335100 1680000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1053900 1943800 0 2106900 1146900 1042900 1033300 1555400 1495300 1358700 1749700 981240 1814300 87675 2121900 1096800 1139600 1068400 1549600 1510000 1335100 1680000 1 1 0 1 1 1 1 1 1 1 1 24691000 0 24691000 14056 2060 12866 73867 89189 89189 1 NAFYIGSYQQCINEAQR Unmodified 2060.9374 0.9374231 119 O14579;O14579-3;O14579-2 COPE Coatomer subunit epsilon yes no 0 0 0 0 By MS/MS By MS/MS 7.4 0.49 3 2 3 2 58.521 58.951 2;3 3.4061E-93 18940 20211116_3435_TMUAki_TMT10x_P_F7 338.12 318.46 10181000 17618000 134740 15763000 13526000 18721000 13104000 15375000 13025000 13252000 14830000 9480600 16433000 986760 16256000 12965000 18814000 13312000 15737000 13318000 13030000 14250000 5 5 4 5 5 5 5 5 5 5 5 5760000 8888900 124590 8334200 8355700 13585000 8460900 8092400 7096200 7078500 7878200 5364100 8292200 630010 8619900 8022000 13392000 8534500 8474700 7306600 6955000 7575600 3 3 3 3 3 3 3 3 3 3 3 4421300 8729600 10152 7428400 5170700 5136200 4643200 7282300 5928900 6173200 6951900 4116500 8140800 356750 7635800 4943400 5422100 4777200 7262600 6011700 6074800 6674600 2 2 1 2 2 2 2 2 2 2 2 3635400000 2349100000 1286300000 14057 119 12867 73868;73869;73870;73871;73872 89190;89191;89192;89193;89194 89191 5 NAGAVIGK Unmodified 728.41809 0.41808807 1329;1330 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 35.487 35.555 2 0.0021211 4028 20211116_3434_TMUAki_TMT10x_P_F6 124.83 60.058 4466900 7446200 56652 6750500 6824200 8312500 5707500 4282900 5071000 4461900 6086500 4159600 6945500 456150 6959200 6518700 8281400 5828100 4563300 5222800 4350300 5840000 2 2 2 2 2 2 2 2 2 2 2 3517200 5800600 44910 5188000 5704700 7374400 4424400 3414000 4091000 3542500 4745500 3275200 5410300 364090 5368600 5440500 7288700 4544400 3674800 4199700 3454500 4557600 1 1 1 1 1 1 1 1 1 1 1 949710 1645600 11742 1562500 1119500 938150 1283200 868930 980010 919350 1341000 884360 1535200 92059 1590600 1078300 992690 1283600 888470 1023100 895810 1282400 1 1 1 1 1 1 1 1 1 1 1 114810000 80788000 34017000 14058 1329;1330 12868 73873;73874;73875 89195;89196;89197 89196 3 NAGDLAPAGGAASASTDEAADAESGTR Unmodified 2432.0688 0.068767445 3010 Q9NXV6 CDKN2AIP CDKN2A-interacting protein yes yes 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 40.009 39.992 3 4.375E-43 10075 20211116_3428_TMUAki_TMT10x_P_F1 198.18 189.14 118830 229080 2863.2 313640 296600 292880 169330 210760 288990 163430 237740 110650 214070 13369 313680 281260 297800 182120 217020 286940 161560 230930 2 2 1 2 2 2 2 2 2 2 2 66490 129660 2863.2 165230 250390 253410 135240 121530 156010 94908 129040 61930 121120 10756 167360 237360 249750 143850 129420 156840 93789 125310 1 1 1 1 1 1 1 1 1 1 1 52343 99417 0 148410 46211 39470 34087 89234 132990 68520 108700 48724 92950 2612.5 146310 43898 48048 38271 87595 130100 67773 105620 1 1 0 1 1 1 1 1 1 1 1 111660000 76121000 35538000 14059 3010 12869 73876;73877;73878 89198;89199 89198 2 NAGEPENTYILRPVFQQR Unmodified 2131.0811 0.081050873 2312 Q8WW35 TCTEX1D2 Tctex1 domain-containing protein 2 yes yes 0 0 0 1 By MS/MS 7 0 1 1 51.928 52.431 3 3.3957E-07 16819 20211116_3446_TMUAki_TMT10x_S_F7 100.58 81.254 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14060 2312 12870 73879 89200 89200 1 NAGFTPQER Unmodified 1018.4832 0.48320752 829 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 1 1 1 1 3 1 30.727 30.616 2 0.00042002 9290 20211116_3441_TMUAki_TMT10x_S_F3 123.5 104.4 1111500 1862800 966.01 1532700 1721900 1672700 1400500 1150300 1272900 1040000 1543700 1034800 1737000 89634 1589000 1642300 1683600 1433500 1192600 1310100 1020300 1480800 3 3 1 3 3 3 3 3 3 3 3 745250 1180900 966.01 1001100 1218900 1271700 837500 718560 817770 640360 984260 693830 1101200 58941 1038100 1158500 1266400 868840 756160 838710 628640 944320 2 2 1 2 2 2 2 2 2 2 2 366270 681960 0 531600 503080 400940 563010 431750 455100 399650 559490 341020 635780 30693 550980 483780 417200 564610 436460 471410 391640 536490 1 1 0 1 1 1 1 1 1 1 1 106770000 58092000 48678000 14061 829 12871 73880;73881;73882;73883 89201;89202;89203 89203 3 NAGNCLSPAVIVGLLK Unmodified 1624.8971 0.89706184 201 O43175 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 0 By MS/MS By MS/MS 3.08 0.64 4 14 6 15 9 82.788 82.754 2;3 1.1515E-69 28807 20211116_3441_TMUAki_TMT10x_S_F3 312.48 273.18 163010000 280130000 929960 243500000 236780000 293260000 263220000 191660000 161050000 191160000 245990000 151780000 261250000 14743000 251750000 227710000 293400000 262450000 199980000 171320000 186720000 234660000 22 22 16 22 22 22 22 22 22 22 22 77514000 126540000 301170 113040000 91903000 171720000 116600000 88455000 75252000 88866000 112670000 72172000 118030000 6467700 117150000 88731000 169440000 115700000 94149000 79693000 86774000 107530000 14 14 10 14 14 14 14 14 14 14 14 85495000 153580000 628790 130460000 144880000 121540000 146620000 103200000 85794000 102300000 133320000 79608000 143220000 8275600 134590000 138980000 123960000 146750000 105830000 91629000 99947000 127130000 8 8 6 8 8 8 8 8 8 8 8 51471000000 26291000000 25180000000 14062 201 12872 73884;73885;73886;73887;73888;73889;73890;73891;73892;73893;73894;73895;73896;73897;73898;73899;73900;73901;73902;73903;73904;73905;73906;73907 89204;89205;89206;89207;89208;89209;89210;89211;89212;89213;89214;89215;89216;89217;89218;89219;89220;89221;89222;89223;89224;89225;89226;89227;89228;89229;89230;89231;89232 89226 29 NAGQAVTIVAQYRPEEYSR Unmodified 2151.0709 0.070880117 1579 Q12959;Q12959-2;Q12959-9;Q12959-5;Q12959-8;Q12959-3;Q12959-6;Q12959-4;Q12959-7 DLG1 Disks large homolog 1 yes no 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 3 1 50.16 50.571 3 2.1573E-50 15569 20211116_3435_TMUAki_TMT10x_P_F7 219.87 198.62 8985200 16279000 213890 15761000 12744000 15817000 11026000 15069000 13930000 12446000 14097000 8367700 15188000 996910 16116000 12189000 16094000 11364000 15281000 14050000 12264000 13594000 4 4 4 4 4 4 4 4 4 4 4 4339800 8175300 158970 7878200 7677300 11627000 6625200 7632300 7279600 6543100 6995000 4041900 7627300 554700 8114100 7344500 11523000 6795500 7929000 7367000 6435200 6756600 2 2 2 2 2 2 2 2 2 2 2 4645400 8103600 54921 7882700 5066400 4191000 4400800 7436900 6650300 5903300 7102300 4325700 7560700 442220 8002000 4844500 4570100 4568300 7351700 6683100 5828600 6837300 2 2 2 2 2 2 2 2 2 2 2 1028300000 650080000 378210000 14063 1579 12873 73908;73909;73910;73911 89233;89234;89235;89236;89237 89235 5 NAGVEGSLIVEK Unmodified 1214.6507 0.65066678 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3.88 2.08 4 4 4 4 4 3 1 2 13 13 50.049 50.012 2;3 8.6794E-49 14604 20211116_3433_TMUAki_TMT10x_P_F5 311.88 243.51 200620000 312490000 765630 303410000 260730000 278380000 216800000 211680000 198610000 193340000 260800000 186790000 291550000 16472000 309790000 248830000 283640000 221640000 218040000 205060000 189580000 249660000 27 27 14 27 27 27 27 27 27 27 27 128340000 195470000 403570 189720000 179610000 213440000 136020000 133520000 124770000 121690000 165340000 119490000 182370000 10938000 194310000 171090000 214180000 139900000 139440000 128860000 119330000 158240000 14 14 7 14 14 14 14 14 14 14 14 72280000 117030000 362060 113690000 81121000 64935000 80783000 78157000 73848000 71655000 95457000 67295000 109190000 5533600 115490000 77736000 69456000 81744000 78603000 76198000 70249000 91415000 13 13 7 13 13 13 13 13 13 13 13 39767000000 20006000000 19762000000 14064 613 12874 73912;73913;73914;73915;73916;73917;73918;73919;73920;73921;73922;73923;73924;73925;73926;73927;73928;73929;73930;73931;73932;73933;73934;73935;73936;73937 89238;89239;89240;89241;89242;89243;89244;89245;89246;89247;89248;89249;89250;89251;89252;89253;89254;89255;89256;89257;89258;89259;89260;89261;89262;89263;89264;89265;89266;89267;89268;89269 89250 32 NAGYAVSLR Unmodified 949.49813 0.49812931 1264 P57105 SYNJ2BP Synaptojanin-2-binding protein yes yes 0 0 0 0 By MS/MS 6 0 1 1 34.915 34.896 2 0.077862 7411 20211116_3434_TMUAki_TMT10x_P_F6 49.96 26.651 153830 237670 5429.3 246340 300520 283250 185210 151160 152410 153680 189780 143270 221800 19868 251250 285580 283310 192880 160430 157810 149990 181920 1 1 1 1 1 1 1 1 1 1 1 153830 237670 5429.3 246340 300520 283250 185210 151160 152410 153680 189780 143270 221800 19868 251250 285580 283310 192880 160430 157810 149990 181920 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4178200 4178200 0 14065 1264 12875 73938 89270 89270 1 NAIANASTLAEVER Unmodified 1457.7474 0.74742071 584 P09661 SNRPA1 U2 small nuclear ribonucleoprotein A' yes yes 0 0 0 0 By MS/MS By MS/MS 3.9 0.831 4 3 3 5 5 48.203 48.186 2;3 6.8402E-33 16378 20211116_3441_TMUAki_TMT10x_S_F3 225.26 201.88 27714000 44415000 212110 56514000 55619000 61098000 35118000 45770000 51470000 34595000 43134000 25804000 41489000 2702100 56867000 52816000 61615000 37200000 46975000 51350000 34248000 41868000 10 10 7 10 10 10 10 10 10 10 10 17489000 28319000 196700 34303000 49288000 54076000 28876000 28669000 32108000 21951000 26038000 16284000 26447000 1895000 34867000 46746000 53299000 30458000 30230000 32308000 21716000 25306000 7 7 5 7 7 7 7 7 7 7 7 10224000 16096000 15417 22211000 6331900 7021500 6241800 17101000 19361000 12644000 17096000 9519800 15042000 807120 22000000 6070000 8316400 6742200 16745000 19042000 12532000 16562000 3 3 2 3 3 3 3 3 3 3 3 2365600000 1501400000 864180000 14066 584 12876 73939;73940;73941;73942;73943;73944;73945;73946;73947;73948 89271;89272;89273;89274;89275;89276;89277;89278;89279;89280;89281;89282 89280 12 NAIDDGCVVPGAGAVEVAMAEALIK Unmodified 2469.2243 0.22434557 982 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 0 By MS/MS By MS/MS 3.74 1.62 2 3 3 4 5 1 1 9 10 81.342 81.335 3;4 1.2349E-29 29747 20211116_3441_TMUAki_TMT10x_S_F3 167.72 152.95 99366000 162390000 702640 162470000 107900000 98112000 123060000 36623000 30079000 48344000 104880000 92522000 151530000 7854900 164780000 103860000 102540000 121150000 40690000 37323000 46732000 98860000 22 22 12 22 22 22 22 22 22 22 22 45389000 70615000 590550 73128000 44009000 55337000 51622000 20447000 17292000 25046000 47214000 42265000 65900000 4165300 74159000 42416000 56687000 50901000 22688000 20155000 24271000 44620000 12 12 9 12 12 12 12 12 12 12 12 53978000 91773000 112090 89346000 63892000 42776000 71434000 16176000 12787000 23298000 57667000 50257000 85625000 3689600 90622000 61440000 45852000 70248000 18002000 17167000 22461000 54240000 10 10 3 10 10 10 10 10 10 10 10 28003000000 16141000000 11861000000 14067 982 12877 73949;73950;73951;73952;73953;73954;73955;73956;73957;73958;73959;73960;73961;73962;73963;73964;73965;73966;73967 89283;89284;89285;89286;89287;89288;89289;89290;89291;89292;89293;89294;89295;89296;89297;89298;89299;89300;89301;89302;89303;89304;89305;89306 89298 24 NAIDDGCVVPGAGAVEVAMAEALIK Oxidation (M) 2485.2193 0.21926019 982 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 1 0 By MS/MS By MS/MS 2.83 0.687 2 3 1 3 3 78.587 78.538 3 8.2358E-06 27652 20211116_3430_TMUAki_TMT10x_P_F3 69.248 55.416 24302000 40933000 17435 38095000 27871000 30801000 31482000 17002000 14808000 19593000 29483000 22626000 38185000 1854000 38954000 26801000 31518000 31229000 18060000 16315000 19029000 27987000 6 6 2 6 6 6 6 6 6 6 6 9203700 14711000 7071.1 14165000 8436700 13774000 10822000 6132400 5575300 7466200 10289000 8569000 13725000 679190 14483000 8144700 13884000 10690000 6660600 6068800 7237000 9779700 2 2 1 2 2 2 2 2 2 2 2 15098000 26223000 10364 23930000 19435000 17027000 20660000 10869000 9233200 12127000 19193000 14057000 24460000 1174800 24471000 18657000 17633000 20538000 11400000 10247000 11792000 18207000 4 4 1 4 4 4 4 4 4 4 4 5144900000 2432600000 2712200000 14068 982 12877 73968;73969;73970;73971;73972;73973 89307;89308;89309;89310;89311;89312;89313 89309 1265 7 NAIEHPVR Unmodified 934.49846 0.49846366 2606 Q99805 TM9SF2 Transmembrane 9 superfamily member 2 yes yes 0 0 0 0 By MS/MS 3 0 1 1 26.048 25.748 3 0.012829 7422 20211116_3441_TMUAki_TMT10x_S_F3 62.107 49.071 87568 158950 0 114040 106110 135780 106170 84098 77331 86286 105150 81503 148150 3683.8 119840 101500 135820 106790 88179 80920 84181 100570 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 87568 158950 0 114040 106110 135780 106170 84098 77331 86286 105150 81503 148150 3683.8 119840 101500 135820 106790 88179 80920 84181 100570 1 1 0 1 1 1 1 1 1 1 1 3427400 0 3427400 14069 2606 12878 73974 89314 89314 1 NAKPLSFK Unmodified 903.5178 0.51780212 1472 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 39.715 39.614 3 0.050325 12929 20211116_3441_TMUAki_TMT10x_S_F3 49.35 31.486 2297900 4085100 10957 3567100 2829000 2446300 2850100 3341700 3433000 2915300 3485000 2139700 3809900 208160 3658800 2713700 2581300 2907900 3339700 3468800 2864800 3360200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2297900 4085100 10957 3567100 2829000 2446300 2850100 3341700 3433000 2915300 3485000 2139700 3809900 208160 3658800 2713700 2581300 2907900 3339700 3468800 2864800 3360200 2 2 2 2 2 2 2 2 2 2 2 69838000 0 69838000 14070 1472 12879 73975;73976 89315;89316 89316 2 NALANPLYCPDYR Unmodified 1565.7297 0.72966216 774 P22695 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes yes 0 0 0 0 By MS/MS 7 0 1 1 53.823 54.336 2 1.5076E-33 17590 20211116_3446_TMUAki_TMT10x_S_F7 224.58 209.61 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14071 774 12880 73977 89317 89317 1 NALDLLLPK Unmodified 995.60153 0.60153174 875 P30566;P30566-2 ADSL Adenylosuccinate lyase yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 75.27 75.224 2 0.00032779 25757 20211116_3435_TMUAki_TMT10x_P_F7 92.838 51.851 15616000 26977000 4316.1 27174000 17721000 28430000 18147000 14982000 14497000 16416000 20075000 14540000 25173000 1303200 27727000 17001000 28583000 18272000 15954000 15106000 15974000 19193000 3 3 1 3 3 3 3 3 3 3 3 11415000 19287000 4316.1 19784000 13820000 23775000 13377000 10509000 10468000 12117000 14315000 10628000 17998000 960030 20208000 13238000 23676000 13502000 11402000 10913000 11768000 13690000 2 2 1 2 2 2 2 2 2 2 2 4200900 7690700 0 7390000 3901700 4654600 4770100 4473500 4028700 4298700 5759800 3911500 7175100 343160 7519300 3762900 4906500 4770100 4552300 4192300 4205500 5502700 1 1 0 1 1 1 1 1 1 1 1 1006500000 631060000 375490000 14072 875 12881 73978;73979;73980 89318;89319;89320;89321 89318 4 NALESYAFNMK Oxidation (M) 1302.5914 0.59143734 596 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B no no 0 0 1 0 By MS/MS By MS/MS 5.85 0.948 1 4 4 4 7 6 54.111 54.423 2;3 3.7522E-06 17641 20211116_3446_TMUAki_TMT10x_S_F7 126.55 107.76 58864000 98800000 806030 105030000 99770000 123340000 71906000 116480000 114710000 98769000 97979000 54813000 92214000 6092400 106990000 95005000 124370000 75720000 118240000 114230000 97192000 95035000 15 15 9 15 15 15 15 15 15 15 15 33913000 56714000 591870 60803000 72709000 96707000 49996000 65072000 62897000 55747000 55320000 31581000 52935000 3868200 62278000 69179000 95593000 52300000 67478000 63153000 54830000 53600000 8 8 5 8 8 8 8 8 8 8 8 24951000 42086000 214160 44230000 27061000 26634000 21911000 51405000 51817000 43021000 42659000 23232000 39279000 2224200 44708000 25826000 28775000 23420000 50764000 51081000 42362000 41435000 7 7 4 7 7 7 7 7 7 7 7 13160000000 7687100000 5473300000 14073 596 12882 73981;73982;73983;73984;73985;73986;73987;73988;73989;73990;73991;73992;73993 89322;89323;89324;89325;89326;89327;89328;89329;89330;89331;89332;89333;89334;89335;89336;89337;89338 89337 573 17 NALESYAFNMK Unmodified 1286.5965 0.59652272 596 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B no no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 4 4 4 4 62.948 63.235 2;3 1.701E-18 21213 20211116_3446_TMUAki_TMT10x_S_F7 219.72 200.62 68822000 108820000 155460 118260000 93402000 91930000 86622000 47359000 38571000 50953000 80993000 64074000 101570000 5203300 119580000 89333000 94275000 86732000 50509000 42848000 49615000 76818000 11 11 2 11 11 11 11 11 11 11 11 42995000 65981000 155460 72082000 61537000 70543000 59027000 29666000 24128000 31619000 49589000 40028000 61590000 3315200 73081000 58909000 71041000 58925000 32283000 26976000 30801000 47048000 7 7 2 7 7 7 7 7 7 7 7 25827000 42835000 0 46176000 31865000 21388000 27595000 17694000 14444000 19334000 31404000 24045000 39982000 1888100 46501000 30424000 23234000 27807000 18225000 15871000 18815000 29769000 4 4 0 4 4 4 4 4 4 4 4 5733500000 3057800000 2675800000 14074 596 12882 73994;73995;73996;73997;73998;73999;74000;74001 89339;89340;89341;89342;89343;89344;89345;89346;89347;89348;89349 89348 11 NALGPGLSPELGPLPALR Unmodified 1770.9992 0.99921872 2188 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 0 0 0 0 By MS/MS By MS/MS 6.6 2.8 1 4 2 3 74.847 74.787 2;3 1.6834E-79 24246 20211116_3436_TMUAki_TMT10x_P_F8 308.22 262.86 10424000 19085000 0 15422000 12423000 16707000 12930000 12816000 12474000 12115000 12954000 9704900 17795000 582300 16011000 11917000 16853000 13075000 13205000 12727000 11861000 12481000 5 5 0 5 5 5 5 5 5 5 5 5055900 9172100 0 7561200 4760600 10104000 6108800 6474300 6289400 5964600 6024400 4707100 8552500 163710 7865500 4595200 10055000 6131500 6750600 6381000 5846300 5819700 2 2 0 2 2 2 2 2 2 2 2 5368200 9913100 0 7860600 7662500 6603000 6821200 6341200 6184100 6150100 6929200 4997800 9242300 418590 8145200 7322200 6798400 6943300 6454800 6345600 6014400 6661300 3 3 0 3 3 3 3 3 3 3 3 5560400000 2937000000 2623500000 14075 2188 12883 74002;74003;74004;74005;74006 89350;89351;89352;89353;89354 89351 5 NALKQETEVELYNEFPEPIKLDK Unmodified 2746.4065 0.40652692 1151 P51149 RAB7A Ras-related protein Rab-7a yes yes 0 0 0 2 By MS/MS 3 0 1 1 72.497 72.126 4 2.205E-15 26168 20211116_3441_TMUAki_TMT10x_S_F3 133.95 121.28 7042100 12642000 176880 10819000 8637300 7857500 9879300 5143300 5902000 6418900 8530300 6558200 11790000 771030 11122000 8323800 8126400 9832900 5404500 6271600 6216500 8147500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7042100 12642000 176880 10819000 8637300 7857500 9879300 5143300 5902000 6418900 8530300 6558200 11790000 771030 11122000 8323800 8126400 9832900 5404500 6271600 6216500 8147500 2 2 2 2 2 2 2 2 2 2 2 430240000 0 430240000 14076 1151 12884 74007 89355;89356 89355 2 NALQELQQIIITPIK Unmodified 1721.0087 0.0087207779 1923 Q5PRF9 SAMD4B Protein Smaug homolog 2 yes yes 0 0 0 0 By MS/MS 2 0 1 1 80.658 80.651 3 0.04395 27993 20211116_3429_TMUAki_TMT10x_P_F2 42.813 30.837 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14077 1923 12885 74008 89357 89357 1 NALQQENHIIDGVK Unmodified 1577.8162 0.81616898 2759 Q9GZT3;Q9GZT3-2 SLIRP SRA stem-loop-interacting RNA-binding protein, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 44.342 44.492 3 7.7289E-07 11329 20211116_3444_TMUAki_TMT10x_S_F5 98.694 74.35 21456000 35073000 71648 41113000 31693000 29222000 24307000 19700000 19302000 17072000 30196000 19977000 32749000 1765800 41338000 30193000 30289000 24887000 20432000 20242000 16782000 28792000 5 5 2 5 5 5 5 5 5 5 5 11803000 19411000 0 22566000 22431000 21587000 17421000 10468000 10743000 8686900 15992000 10988000 18124000 905020 22783000 21367000 21802000 17726000 11151000 11407000 8557400 15264000 2 2 0 2 2 2 2 2 2 2 2 9653500 15662000 71648 18547000 9261800 7634400 6885900 9232700 8559300 8385000 14204000 8988900 14625000 860800 18554000 8825200 8486400 7160700 9281200 8834700 8224200 13528000 3 3 2 3 3 3 3 3 3 3 3 1373400000 948890000 424520000 14078 2759 12886 74009;74010;74011;74012;74013 89358;89359;89360;89361;89362;89363 89362 6 NALSSLWGK Unmodified 974.51853 0.5185304 1272 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E yes yes 0 0 0 0 By MS/MS 3 0 1 1 64.487 64.036 2 0.00029383 22876 20211116_3441_TMUAki_TMT10x_S_F3 94.409 63.335 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14079 1272 12887 74014 89364 89364 1 NALTTLAGPLTPPVK Unmodified 1491.8661 0.86607929 2800 Q9H3P2 NELFA Negative elongation factor A yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 70.247 69.899 3 4.6442E-10 25223 20211116_3441_TMUAki_TMT10x_S_F3 116.43 95.477 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14080 2800 12888 74015;74016 89365;89366 89366 2 NALVSHLDGTTPVCEDIGR Unmodified 2052.9899 0.9898526 891 P31930 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 50.326 50.36 3 1.3426E-24 16152 20211116_3430_TMUAki_TMT10x_P_F3 177.12 171.15 10734000 17738000 75565 20993000 17078000 19625000 12400000 14938000 14277000 12720000 15945000 9995000 16564000 998430 21166000 16259000 19972000 12881000 15359000 14502000 12515000 15330000 8 8 5 8 8 8 8 8 8 8 8 6872400 11192000 55504 13135000 14039000 16409000 9737900 9964100 9263100 8211900 10595000 6399100 10450000 694930 13311000 13355000 16370000 10088000 10404000 9491600 8092300 10179000 5 5 3 5 5 5 5 5 5 5 5 3862100 6546500 20062 7858600 3038400 3216300 2662100 4974400 5014200 4508500 5350400 3596000 6113500 303500 7855000 2903600 3602400 2792800 4954900 5010100 4422400 5150900 3 3 2 3 3 3 3 3 3 3 3 4832700000 2565400000 2267300000 14081 891 12889 74017;74018;74019;74020;74021;74022 89367;89368;89369;89370;89371;89372;89373;89374 89367 8 NAMGSLASQATK Oxidation (M) 1193.571 0.57103625 1232 P55036 PSMD4 26S proteasome non-ATPase regulatory subunit 4 yes yes 0 0 1 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 32.425 32.715 3 0.025298 8539 20211116_3435_TMUAki_TMT10x_P_F7 47.915 36.224 80405 215320 147.21 160930 224390 751140 88281 52661 103320 436650 104770 74866 200710 6822.8 176850 211740 713110 97130 100290 104510 410640 101020 2 2 1 2 2 2 2 2 2 2 2 58250 171230 147.21 116140 190790 654060 72104 30774 74650 338230 79400 54237 159570 6822.8 130420 179960 619130 79423 71948 76001 317660 76447 1 1 1 1 1 1 1 1 1 1 1 22155 44092 0 44795 33597 97072 16177 21887 28671 98424 25372 20629 41145 0 46430 31777 93976 17706 28338 28504 92973 24578 1 1 0 1 1 1 1 1 1 1 1 5458300 4712500 745850 14082 1232 12890 74023;74024;74025;74026 89375;89376 89375 1656 2 NAPAIIFIDELDAIAPK Unmodified 1809.9877 0.98765098 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 By MS/MS By MS/MS 4.56 1.93 1 7 6 6 7 5 7 2 21 20 81.815 81.813 2;3;4 2.9433E-69 26434 20211116_3434_TMUAki_TMT10x_P_F6 297.16 264.83 149590000 259700000 798990 210340000 181760000 237470000 220200000 148660000 154740000 165270000 211580000 139280000 242140000 12493000 218470000 175230000 238250000 219320000 156130000 162300000 160730000 202340000 46 46 24 46 46 46 46 46 46 46 46 77961000 130360000 556390 103650000 77182000 140800000 91941000 77344000 79214000 85115000 105730000 72591000 121540000 6648700 108180000 74389000 139720000 92094000 82073000 82085000 82808000 101170000 26 26 13 26 26 26 26 26 26 26 26 71629000 129340000 242610 106690000 104580000 96671000 128260000 71316000 75523000 80158000 105850000 66689000 120600000 5844600 110290000 100840000 98531000 127230000 74054000 80216000 77922000 101170000 20 20 11 20 20 20 20 20 20 20 20 65214000000 30518000000 34696000000 14083 1235 12891 74027;74028;74029;74030;74031;74032;74033;74034;74035;74036;74037;74038;74039;74040;74041;74042;74043;74044;74045;74046;74047;74048;74049;74050;74051;74052;74053;74054;74055;74056;74057;74058;74059;74060;74061;74062;74063;74064;74065;74066;74067 89377;89378;89379;89380;89381;89382;89383;89384;89385;89386;89387;89388;89389;89390;89391;89392;89393;89394;89395;89396;89397;89398;89399;89400;89401;89402;89403;89404;89405;89406;89407;89408;89409;89410;89411;89412;89413;89414;89415;89416;89417;89418;89419;89420;89421;89422;89423;89424;89425 89396 49 NAPAIIFIDELDAIAPKR Unmodified 1966.0888 0.088762013 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 1 By MS/MS By MS/MS 7.38 0.781 3 4 9 11 5 69.826 69.85 3;4 4.4383E-31 25615 20211116_3447_TMUAki_TMT10x_S_F8 184.22 169.87 77093000 124240000 1460000 96859000 97542000 113560000 99681000 86847000 77534000 83382000 104000000 71790000 115830000 7716200 101000000 93649000 114050000 100310000 89544000 80786000 81578000 99507000 22 22 17 22 22 22 22 22 22 22 22 35270000 55062000 183580 46150000 31534000 63568000 40615000 37874000 35992000 37496000 44451000 32840000 51345000 2798700 47971000 30459000 63107000 40580000 39793000 37118000 36636000 42619000 16 16 13 16 16 16 16 16 16 16 16 41823000 69177000 1276400 50709000 66009000 49990000 59066000 48973000 41542000 45886000 59550000 38950000 64480000 4917500 53025000 63190000 50948000 59733000 49752000 43668000 44942000 56888000 6 6 4 6 6 6 6 6 6 6 6 19947000000 9809900000 10137000000 14084 1235 12892 74068;74069;74070;74071;74072;74073;74074;74075;74076;74077;74078;74079;74080;74081;74082;74083 89426;89427;89428;89429;89430;89431;89432;89433;89434;89435;89436;89437;89438;89439;89440;89441;89442;89443;89444;89445;89446;89447;89448 89447 23 NAPSRPPSLPTPR Unmodified 1388.7524 0.75244651 3358 Q9Y6X9;Q9Y6X9-2 MORC2 MORC family CW-type zinc finger protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 32.75 32.686 3 1.7196E-11 8510 20211116_3429_TMUAki_TMT10x_P_F2 142.39 113.7 930820 1504900 14126 1788800 2548800 2035600 1388700 1291100 1444000 1065600 1608400 866790 1405300 113000 1808500 2415600 2041700 1471000 1343600 1472400 1050000 1546500 3 3 3 3 3 3 3 3 3 3 3 656100 1035300 6721.1 1262900 2300600 1779100 1117300 946150 1076500 775840 1166300 610950 966900 83692 1280000 2176600 1761900 1193900 998920 1100200 764740 1122300 2 2 2 2 2 2 2 2 2 2 2 274720 469610 7405.4 525880 248140 256410 271450 344980 367450 289760 442170 255840 438400 29305 528480 238970 279830 277090 344630 372260 285270 424230 1 1 1 1 1 1 1 1 1 1 1 132770000 123100000 9668800 14085 3358 12893 74084;74085;74086 89449;89450;89451 89450 3 NAPSRPPSLPTPRPASQPR Unmodified 2025.0868 0.086804953 3358 Q9Y6X9;Q9Y6X9-2 MORC2 MORC family CW-type zinc finger protein 2 yes no 0 0 0 2 By MS/MS 4.5 0.5 1 1 2 31.414 31.398 4 6.6119E-18 7206 20211116_3433_TMUAki_TMT10x_P_F5 156.78 139.12 486930 819730 0 866750 1188700 1109500 646500 646850 637810 532820 782180 453310 765070 42120 884540 1125600 1104900 683850 677610 654360 525080 750070 2 2 0 2 2 2 2 2 2 2 2 486930 819730 0 866750 1188700 1109500 646500 646850 637810 532820 782180 453310 765070 42120 884540 1125600 1104900 683850 677610 654360 525080 750070 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 84624000 84624000 0 14086 3358 12894 74087;74088 89452;89453 89453 2 NAPVTFIVDGAVVK Unmodified 1428.7977 0.79766537 2812 Q9H5V9;Q9H5V9-2;Q9H5V9-3 CXorf56 UPF0428 protein CXorf56 yes no 0 0 0 0 By MS/MS 6.67 0.471 1 2 3 68.55 68.777 2;3 5.4466E-26 23048 20211116_3435_TMUAki_TMT10x_P_F7 196.38 153.1 4017400 6662500 36450 6000100 4504100 7775200 5036300 4333400 3744600 4408800 5355600 3740800 6214400 373850 6194500 4334300 7734000 5040700 4581900 3923200 4302800 5116400 1 1 1 1 1 1 1 1 1 1 1 4017400 6662500 36450 6000100 4504100 7775200 5036300 4333400 3744600 4408800 5355600 3740800 6214400 373850 6194500 4334300 7734000 5040700 4581900 3923200 4302800 5116400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 529600000 529600000 0 14087 2812 12895 74089;74090;74091 89454;89455 89455 2 NAQAIEDMVGYAQETQHEK Oxidation (M) 2176.9695 0.96951109 2575 Q99460;Q99460-2 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 1 0 By MS/MS By MS/MS 3 0 2 1 1 43.574 43.43 3 1.6112E-31 14596 20211116_3441_TMUAki_TMT10x_S_F3 184.2 168.26 544680 900200 518.66 1011200 639850 678490 433560 1079200 1053700 814990 954140 507130 840400 43635 1018800 608150 720730 469760 1069100 1041200 806850 923510 2 2 1 2 2 2 2 2 2 2 2 168120 262790 0 263440 338760 421150 230720 249000 243040 209440 235050 156510 245220 12989 271070 321890 415440 240060 260670 246430 206180 226990 1 1 0 1 1 1 1 1 1 1 1 376570 637410 518.66 747800 301090 257350 202840 830210 810610 605550 719090 350620 595180 30646 747740 286260 305290 229700 808470 794820 600660 696510 1 1 1 1 1 1 1 1 1 1 1 99063000 46386000 52677000 14088 2575 12896 74092;74093 89456;89457 89457 2806 2 NAQLDCSKLETLGIGQR Unmodified 1901.9629 0.96290957 3036 Q9NZL9;Q9NZL9-2 MAT2B Methionine adenosyltransferase 2 subunit beta yes no 0 0 0 1 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 55.172 55.634 3 8.6078E-11 18147 20211116_3446_TMUAki_TMT10x_S_F7 126.19 111.26 17697000 33329000 492500 31796000 27495000 35028000 19786000 38835000 35636000 31527000 32823000 16482000 31094000 2063500 32594000 26200000 35570000 20964000 39074000 35460000 31092000 31750000 4 4 4 4 4 4 4 4 4 4 4 8589500 14825000 299860 14564000 18590000 26815000 13834000 17011000 15243000 13520000 14588000 7999900 13832000 1131600 15060000 17724000 26342000 14325000 17686000 15422000 13349000 14093000 2 2 2 2 2 2 2 2 2 2 2 9107800 18505000 192650 17232000 8905100 8212800 5951800 21824000 20393000 18006000 18234000 8481700 17262000 931810 17535000 8476100 9228800 6638600 21388000 20038000 17743000 17657000 2 2 2 2 2 2 2 2 2 2 2 1545100000 941660000 603470000 14089 3036 12897 74094;74095;74096 89458;89459;89460;89461 89461 4 NAQLNIELEAAHH Unmodified 1458.7215 0.72154031 1031 P43490 NAMPT Nicotinamide phosphoribosyltransferase yes yes 0 0 0 0 By MS/MS By MS/MS 2.56 1.07 2 2 3 2 5 4 40.811 40.762 3 9.7463E-15 13418 20211116_3441_TMUAki_TMT10x_S_F3 165.09 150.22 7684500 12106000 105160 12922000 10384000 9185600 7972900 8990800 8673100 7616000 10801000 7155700 11299000 743290 13069000 9901600 9583700 8235000 9109900 8868300 7494800 10354000 17 17 12 17 17 17 17 17 17 17 17 2688500 3889700 72241 4603300 5302700 5212000 3400800 3154500 2943900 2592400 3901700 2503700 3632200 307010 4654900 5040900 5225800 3534800 3294300 3048900 2555100 3734200 9 9 6 9 9 9 9 9 9 9 9 4996000 8216200 32917 8318800 5081200 3973600 4572100 5836300 5729200 5023500 6899600 4651900 7667000 436280 8414300 4860700 4357900 4700100 5815600 5819400 4939700 6619600 8 8 6 8 8 8 8 8 8 8 8 2132200000 810830000 1321400000 14090 1031 12898 74097;74098;74099;74100;74101;74102;74103;74104;74105 89462;89463;89464;89465;89466;89467;89468;89469;89470;89471;89472;89473;89474;89475;89476;89477;89478;89479 89477 18 NAQMAQSPILLLGGAASTLLQNR Unmodified 2366.274 0.27401338 8 A1L0T0 ILVBL Acetolactate synthase-like protein yes yes 0 0 0 0 By MS/MS 6 0 1 1 80.653 80.653 3 6.9656E-21 26374 20211116_3445_TMUAki_TMT10x_S_F6 148.66 137.72 1052100 1617700 0 1523700 1358600 1057100 1320500 864030 733380 885430 1009900 979510 1509200 77978 1554100 1300900 1101300 1323300 888870 781590 863880 965650 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1052100 1617700 0 1523700 1358600 1057100 1320500 864030 733380 885430 1009900 979510 1509200 77978 1554100 1300900 1101300 1323300 888870 781590 863880 965650 1 1 0 1 1 1 1 1 1 1 1 561950000 0 561950000 14091 8 12899 74106 89480 89480 1 NARPEDLMNMQHCNLLCLPENYQMK 3 Oxidation (M) 3166.3763 0.37626467 997 P41227;P41227-2 NAA10 N-alpha-acetyltransferase 10 yes no 0 0 3 1 By MS/MS By matching 7 0 2 1 1 50.273 50.841 4 2.2283E-05 15659 20211116_3435_TMUAki_TMT10x_P_F7 68.916 62.267 754240 1348400 0 1267900 1198900 2625500 1118400 2013600 1968500 1763100 1438600 702040 1257900 39023 1319500 1145600 2577200 1165000 2070700 1946600 1732200 1404100 1 1 0 1 1 1 1 1 1 1 1 754240 1348400 0 1267900 1198900 2625500 1118400 2013600 1968500 1763100 1438600 702040 1257900 39023 1319500 1145600 2577200 1165000 2070700 1946600 1732200 1404100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1028900000 472640000 556220000 14092 997 12900 74107;74108 89481 89481 1283;1284;1285 1 NASCYFDIEWR Unmodified 1459.619 0.61904908 1859 Q16658 FSCN1 Fascin yes yes 0 0 0 0 By MS/MS By MS/MS 4.88 0.781 3 3 2 5 3 67.192 67.2 2;3 9.4583E-16 20872 20211116_3445_TMUAki_TMT10x_S_F6 205.56 180.34 61371000 105860000 290850 103360000 77394000 68804000 81093000 37935000 31227000 42751000 73130000 57140000 98766000 4937000 105100000 74277000 71531000 80519000 40271000 35437000 41555000 69248000 11 11 5 11 11 11 11 11 11 11 11 25183000 41980000 157640 42765000 29939000 39109000 36230000 15815000 13559000 17575000 28696000 23446000 39175000 1948000 43517000 28852000 39544000 35719000 17308000 15323000 17092000 27213000 5 5 2 5 5 5 5 5 5 5 5 36189000 63877000 133200 60593000 47454000 29695000 44862000 22120000 17668000 25176000 44434000 33694000 59591000 2988900 61584000 45425000 31987000 44799000 22964000 20114000 24462000 42035000 6 6 3 6 6 6 6 6 6 6 6 6744800000 3290300000 3454500000 14093 1859 12901 74109;74110;74111;74112;74113;74114;74115;74116 89482;89483;89484;89485;89486;89487;89488;89489;89490;89491;89492;89493 89493 12 NASEMIDKLTLTFNR Unmodified 1751.8876 0.88761936 949;950 P36542;P36542-2 ATP5C1 ATP synthase subunit gamma, mitochondrial no no 0 0 0 1 By MS/MS By MS/MS 4 2.83 2 1 2 1 73.674 73.537 3 1.1481E-23 25148 20211116_3429_TMUAki_TMT10x_P_F2 180.64 159.33 20766000 38619000 200260 28212000 27886000 24046000 25460000 13116000 10880000 14252000 24501000 19337000 35997000 1987400 29454000 26688000 24508000 25501000 13921000 12190000 13872000 23214000 3 3 2 3 3 3 3 3 3 3 3 7965800 13639000 34249 9575600 7861000 10727000 9493800 4037200 3243900 4971700 8765300 7417200 12711000 690870 10073000 7580600 10706000 9351100 4470300 3769500 4817200 8284600 1 1 1 1 1 1 1 1 1 1 1 12801000 24980000 166020 18637000 20025000 13319000 15966000 9078600 7636600 9280200 15736000 11920000 23286000 1296500 19381000 19107000 13801000 16149000 9450500 8420800 9055200 14929000 2 2 1 2 2 2 2 2 2 2 2 1988400000 949810000 1038600000 14094 949;950 12902 74117;74118;74119 89494;89495;89496;89497 89494 4 NASEMIDKLTLTFNR Oxidation (M) 1767.8825 0.88253399 949;950 P36542;P36542-2 ATP5C1 ATP synthase subunit gamma, mitochondrial no no 0 0 1 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 57.35 57.7 3 0.00044266 17255 20211116_3436_TMUAki_TMT10x_P_F8 78.902 66.747 38433000 67872000 374600 43712000 50236000 83266000 48936000 74323000 69277000 62222000 64699000 35788000 63241000 3700800 46892000 48158000 82185000 50336000 75655000 69425000 61268000 62554000 5 5 5 5 5 5 5 5 5 5 5 27961000 47151000 160410 30241000 32219000 66111000 35301000 53115000 49038000 43957000 46600000 26036000 43933000 2527300 32582000 30981000 64845000 36072000 54386000 49200000 43308000 45029000 3 3 3 3 3 3 3 3 3 3 3 10472000 20721000 214200 13471000 18016000 17155000 13635000 21207000 20239000 18265000 18098000 9752000 19308000 1173500 14310000 17178000 17340000 14264000 21269000 20225000 17959000 17525000 2 2 2 2 2 2 2 2 2 2 2 4467000000 2403400000 2063500000 14095 949;950 12902 74120;74121;74122;74123 89498;89499;89500;89501;89502 89500 1208 5 NASGSVILK Unmodified 887.50763 0.50763136 1689 Q14168;Q14168-3;Q14168-5;Q14168-6;Q14168-2;Q14168-4 MPP2 MAGUK p55 subfamily member 2 yes no 0 0 0 0 By MS/MS 7 0 1 1 36.25 36.935 2 9.3042E-05 10547 20211116_3446_TMUAki_TMT10x_S_F7 103.7 40.858 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14096 1689 12903 74124 89503 89503 1 NASTFEDVTQVSSAYQK Unmodified 1873.8694 0.86938634 1699 Q14247;Q14247-3;Q14247-2 CTTN Src substrate cortactin yes no 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 57.331 57.449 3 1.5515E-21 16578 20211116_3444_TMUAki_TMT10x_S_F5 162.81 147.66 31218000 48753000 355000 54157000 38516000 47083000 32767000 35405000 34321000 32864000 39511000 29068000 45512000 2826500 54761000 36795000 48139000 33586000 36511000 35032000 32202000 37954000 8 8 5 8 8 8 8 8 8 8 8 19539000 29176000 285510 32802000 28497000 37777000 23770000 21512000 20792000 20124000 24280000 18193000 27238000 1866200 33282000 27213000 37812000 24266000 22651000 21407000 19711000 23314000 5 5 3 5 5 5 5 5 5 5 5 11679000 19576000 69490 21354000 10019000 9306800 8996900 13893000 13528000 12740000 15230000 10875000 18274000 960210 21479000 9582200 10327000 9319700 13859000 13625000 12490000 14640000 3 3 2 3 3 3 3 3 3 3 3 4815200000 2617500000 2197700000 14097 1699 12904 74125;74126;74127;74128;74129 89504;89505;89506;89507;89508;89509;89510;89511 89509 8 NATNVEQAFMTMAAEIK Oxidation (M) 1883.8757 0.87573405 2781 Q9H0U4;Q92928 RAB1B;RAB1C Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C yes no 0 0 1 0 By MS/MS By matching 6.5 1.12 1 1 1 1 3 1 78.829 78.832 3 0.00043547 26496 20211116_3433_TMUAki_TMT10x_P_F5 63.46 8.4952 14197000 23436000 172390 21371000 14408000 22725000 17152000 10855000 9770200 11202000 16692000 13219000 21861000 1261200 21968000 13890000 22800000 17026000 11646000 10508000 10926000 15888000 3 3 2 3 3 3 3 3 3 3 3 14197000 23436000 172390 21371000 14408000 22725000 17152000 10855000 9770200 11202000 16692000 13219000 21861000 1261200 21968000 13890000 22800000 17026000 11646000 10508000 10926000 15888000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2695300000 2474000000 221350000 14098 2781 12905 74130;74131;74132;74133 89512;89513;89514 89512 2948;2949 3 NATNVEQAFMTMAAEIK Unmodified 1867.8808 0.88081943 2781 Q9H0U4;Q92928 RAB1B;RAB1C Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C yes no 0 0 0 0 By MS/MS By MS/MS 6.88 1.05 1 2 2 3 4 4 80.291 80.299 3 2.4859E-15 28391 20211116_3446_TMUAki_TMT10x_S_F7 141.13 124.44 15263000 25900000 137800 25999000 18602000 17858000 20236000 9463800 8334300 11016000 18426000 14211000 24168000 1317400 26395000 17878000 18506000 20073000 10092000 9357700 10695000 17462000 5 5 1 5 5 5 5 5 5 5 5 6673400 11134000 137800 11795000 6549200 9172200 8387500 3615300 3395400 4547300 8019900 6214300 10392000 648250 11947000 6332200 9381000 8257100 3984100 3836700 4402700 7593300 2 2 1 2 2 2 2 2 2 2 2 8589300 14766000 0 14204000 12053000 8686000 11849000 5848400 4939000 6468400 10406000 7996800 13776000 669180 14448000 11546000 9125300 11816000 6108100 5520900 6291800 9869100 3 3 0 3 3 3 3 3 3 3 3 5943900000 1794600000 4149300000 14099 2781 12905 74134;74135;74136;74137;74138;74139;74140;74141 89515;89516;89517;89518;89519;89520 89520 6 NATNVEQAFMTMAAEIK 2 Oxidation (M) 1899.8706 0.87064867 2781 Q9H0U4;Q92928 RAB1B;RAB1C Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C yes no 0 0 2 0 By MS/MS 5 0.894 2 1 2 5 63.587 63.55 3 0.00011412 20600 20211116_3442_TMUAki_TMT10x_S_F4 76.586 21.15 6837400 12421000 0 11533000 9245200 7769500 8239400 8902100 8987900 8883200 8769500 6365200 11587000 466770 11772000 8830800 8172600 8433300 8993300 9103100 8676600 8466300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6837400 12421000 0 11533000 9245200 7769500 8239400 8902100 8987900 8883200 8769500 6365200 11587000 466770 11772000 8830800 8172600 8433300 8993300 9103100 8676600 8466300 1 1 0 1 1 1 1 1 1 1 1 1394900000 0 1394900000 14100 2781 12905 74142;74143;74144;74145;74146 89521;89522;89523 89521 2948;2949 3 NATNVEQSFMTMAAEIK 2 Oxidation (M) 1915.8656 0.86556329 1367 P62820;P62820-3;P62820-2 RAB1A Ras-related protein Rab-1A yes no 0 0 2 0 By MS/MS 4 1 1 1 2 58.124 58.312 3 0.00033821 17895 20211116_3433_TMUAki_TMT10x_P_F5 70.235 52.318 1913200 3565600 89992 3320900 2682000 4396800 2639700 2390900 2748300 2859900 2620900 1782000 3326100 253250 3421300 2576000 4367800 2683100 2546200 2786700 2773800 2532200 1 1 1 1 1 1 1 1 1 1 1 1913200 3565600 89992 3320900 2682000 4396800 2639700 2390900 2748300 2859900 2620900 1782000 3326100 253250 3421300 2576000 4367800 2683100 2546200 2786700 2773800 2532200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 652510000 652510000 0 14101 1367 12906 74147;74148 89524;89525 89525 1834;1835 2 NATNVEQSFMTMAAEIK Oxidation (M) 1899.8706 0.87064867 1367 P62820;P62820-3;P62820-2 RAB1A Ras-related protein Rab-1A yes no 0 0 1 0 By MS/MS By MS/MS 5 1 1 1 1 1 75.449 75.434 3 0.0075614 24257 20211116_3445_TMUAki_TMT10x_S_F6 54.805 22.987 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14102 1367 12906 74149;74150 89526;89527 89527 1834;1835 2 NAVEEYVYEFR Unmodified 1417.6514 0.65139506 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 0 By MS/MS By MS/MS 2.29 1.03 4 4 4 2 7 7 65.317 65.094 2;3 1.0785E-23 23274 20211116_3441_TMUAki_TMT10x_S_F3 252.68 192.25 77903000 133900000 947820 124230000 93402000 122440000 93507000 93429000 91315000 96701000 105950000 72535000 124910000 6599600 127390000 89556000 124190000 94775000 96554000 93513000 94308000 101750000 19 19 9 19 19 19 19 19 19 19 19 34426000 57056000 403930 52687000 38116000 69600000 41873000 41547000 40055000 42925000 44905000 32054000 53223000 2933300 54311000 36644000 69230000 42221000 43699000 41000000 41866000 43168000 9 9 5 9 9 9 9 9 9 9 9 43478000 76846000 543890 71542000 55286000 52841000 51634000 51882000 51260000 53776000 61041000 40481000 71686000 3666200 73079000 52912000 54963000 52554000 52855000 52512000 52442000 58581000 10 10 4 10 10 10 10 10 10 10 10 17892000000 9971600000 7920200000 14103 2345 12907 74151;74152;74153;74154;74155;74156;74157;74158;74159;74160;74161;74162;74163;74164 89528;89529;89530;89531;89532;89533;89534;89535;89536;89537;89538;89539;89540;89541;89542;89543;89544;89545;89546 89542 19 NAVEEYVYEMR Oxidation (M) 1417.6184 0.61838038 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 1 0 By MS/MS By MS/MS 2.07 0.961 5 4 4 1 7 7 48.521 48.339 2;3 3.5171E-05 13572 20211116_3440_TMUAki_TMT10x_S_F2 108.3 101.45 21769000 38677000 353330 38767000 33888000 43160000 26179000 36799000 39356000 32823000 34841000 20271000 36090000 2243200 39608000 32317000 43555000 27366000 37616000 39301000 32221000 33749000 14 14 11 14 14 14 14 14 14 14 14 12238000 20656000 191000 21430000 24014000 34028000 18536000 20295000 21756000 18159000 18932000 11396000 19277000 1297800 21996000 22896000 33580000 19188000 21263000 21892000 17823000 18350000 8 8 6 8 8 8 8 8 8 8 8 9531400 18021000 162340 17337000 9874200 9132300 7643200 16504000 17600000 14664000 15909000 8875800 16813000 945390 17613000 9421500 9975100 8177700 16353000 17409000 14397000 15399000 6 6 5 6 6 6 6 6 6 6 6 5901300000 3329000000 2572200000 14104 916 12908 74165;74166;74167;74168;74169;74170;74171;74172;74173;74174;74175;74176;74177;74178 89547;89548;89549;89550;89551;89552;89553;89554;89555;89556;89557;89558;89559;89560;89561;89562;89563;89564 89561 1154 18 NAVEEYVYEMR Unmodified 1401.6235 0.62346575 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 0 By MS/MS By MS/MS 1.78 0.786 4 3 2 5 4 59.825 59.625 2;3 1.7441E-21 21068 20211116_3441_TMUAki_TMT10x_S_F3 208.84 173.33 22654000 38367000 126280 39422000 29545000 32191000 28341000 19807000 16838000 19487000 28159000 21094000 35804000 2020900 40034000 28302000 32961000 28454000 20753000 18035000 19045000 26813000 8 8 4 8 8 8 8 8 8 8 8 14310000 23979000 76212 25003000 20094000 25069000 20425000 11951000 10187000 11964000 17799000 13324000 22379000 1307600 25436000 19278000 25239000 20384000 12814000 11082000 11684000 16934000 5 5 3 5 5 5 5 5 5 5 5 8344300 14388000 50064 14419000 9451400 7122000 7915500 7855500 6651000 7522600 10360000 7769400 13426000 713250 14599000 9024200 7722000 8070200 7940000 6953200 7360700 9879000 3 3 1 3 3 3 3 3 3 3 3 2810500000 2064000000 746490000 14105 916 12908 74179;74180;74181;74182;74183;74184;74185;74186;74187 89565;89566;89567;89568;89569;89570;89571;89572;89573 89573 9 NAVITVPAYFNDSQR Unmodified 1693.8424 0.84238373 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 6.71 1.03 2 4 4 4 7 7 60.851 61.077 2;3 9.324E-61 18334 20211116_3445_TMUAki_TMT10x_S_F6 303.91 281 61986000 110220000 412060 103710000 81848000 99640000 73983000 111990000 94766000 93448000 94989000 57715000 102830000 4754700 106200000 78283000 102030000 76099000 112690000 95507000 92030000 91626000 20 20 10 20 20 20 20 20 20 20 20 21244000 36889000 246020 35462000 31921000 55395000 31715000 36652000 33264000 30989000 32274000 19782000 34416000 2047100 36576000 30611000 54782000 32228000 38042000 33738000 30499000 31164000 8 8 5 8 8 8 8 8 8 8 8 40741000 73334000 166040 68252000 49927000 44244000 42268000 75339000 61502000 62459000 62715000 37933000 68410000 2707600 69628000 47672000 47253000 43870000 74645000 61769000 61532000 60462000 12 12 5 12 12 12 12 12 12 12 12 33513000000 18010000000 15503000000 14106 972 12909 74188;74189;74190;74191;74192;74193;74194;74195;74196;74197;74198;74199;74200;74201 89574;89575;89576;89577;89578;89579;89580;89581;89582;89583;89584;89585;89586;89587;89588;89589;89590;89591;89592;89593 89584 20 NAVIVAK Unmodified 713.44357 0.44357454 1714;259 O60256;O60256-4;O60256-2;O60256-3;Q14558;Q14558-2 PRPSAP2;PRPSAP1 Phosphoribosyl pyrophosphate synthase-associated protein 2;Phosphoribosyl pyrophosphate synthase-associated protein 1 no no 0 0 0 0 By MS/MS By MS/MS 6.25 0.433 3 1 2 2 36.241 36.454 2 0.0054826 9898 20211116_3435_TMUAki_TMT10x_P_F7 108.24 32.927 1578500 2500500 3276.5 2237300 2091200 2703000 1827400 1352300 1449800 1400000 1962000 1469700 2332300 134860 2307900 1998300 2694500 1855800 1444500 1509600 1365300 1876800 2 2 1 2 2 2 2 2 2 2 2 1578500 2500500 3276.5 2237300 2091200 2703000 1827400 1352300 1449800 1400000 1962000 1469700 2332300 134860 2307900 1998300 2694500 1855800 1444500 1509600 1365300 1876800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 51269000 51269000 0 14107 259;1714 12910 74202;74203;74204;74205 89594;89595;89596;89597 89595 4 NAVIVALSSK Unmodified 1000.5917 0.59169534 1293 P61086;P61086-2 UBE2K Ubiquitin-conjugating enzyme E2 K yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 58.483 58.226 2;3 3.6258E-06 18960 20211116_3429_TMUAki_TMT10x_P_F2 145.89 111.08 5410600 9393700 0 8366000 9577400 12573000 7308700 7681900 7071800 6567400 8202300 5037800 8761500 502940 8670200 9126000 12439000 7524800 8023900 7244800 6459900 7877500 1 1 0 1 1 1 1 1 1 1 1 5410600 9393700 0 8366000 9577400 12573000 7308700 7681900 7071800 6567400 8202300 5037800 8761500 502940 8670200 9126000 12439000 7524800 8023900 7244800 6459900 7877500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 628370000 628370000 0 14108 1293 12911 74206;74207 89598;89599 89598 2 NAVIVDTTICDPHYNLAR Unmodified 2071.0157 0.015673424 1564 Q12789;Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 52.804 52.928 3 4.581E-05 15833 20211116_3433_TMUAki_TMT10x_P_F5 80.638 67.235 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14109 1564 12912 74208;74209 89600;89601 89600 2 NAVTQEFGPVPDTAR Unmodified 1600.7845 0.7845345 2605 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 5 5 5 5 47.637 47.621 2;3 4.2258E-72 14999 20211116_3430_TMUAki_TMT10x_P_F3 324.41 276.32 10244000 16827000 204820 18245000 15588000 15847000 11335000 13353000 13325000 11574000 14183000 9539100 15707000 1080600 18477000 14849000 16235000 11781000 13649000 13499000 11377000 13655000 7 7 5 7 7 7 7 7 7 7 7 5262300 8491800 96167 8777200 11174000 11819000 7250800 7434600 7543400 6461100 7716900 4900300 7924900 587520 8979500 10620000 11754000 7569000 7751200 7667400 6350400 7438900 4 4 3 4 4 4 4 4 4 4 4 4981300 8335600 108660 9468200 4413700 4027700 4084100 5918700 5781600 5112800 6466000 4638800 7782300 493100 9497700 4229500 4481300 4212500 5898200 5831800 5026600 6216400 3 3 2 3 3 3 3 3 3 3 3 1409800000 903920000 505920000 14110 2605 12913 74210;74211;74212;74213;74214;74215;74216;74217;74218;74219 89602;89603;89604;89605;89606;89607;89608;89609;89610 89603 9 NAVTQFVSSMSASADVLALAK Unmodified 2109.0776 0.077604979 1067 P47985;P0C7P4 UQCRFS1;UQCRFS1P1 Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11;Putative cytochrome b-c1 complex subunit Rieske-like protein 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 81.339 81.285 3 0.0075392 28861 20211116_3430_TMUAki_TMT10x_P_F3 44.759 22.956 1592400 2449000 19714 2235200 1470300 2120600 1427700 1046600 1008600 1233600 1604500 1482800 2284300 148690 2293600 1409900 2143200 1437400 1123900 1065500 1197100 1529400 1 1 1 1 1 1 1 1 1 1 1 1592400 2449000 19714 2235200 1470300 2120600 1427700 1046600 1008600 1233600 1604500 1482800 2284300 148690 2293600 1409900 2143200 1437400 1123900 1065500 1197100 1529400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 548710000 548710000 0 14111 1067 12914 74220 89611 89611 1 NAVVQGLEQPHGLVVHPLR Unmodified 2062.1436 0.14359155 1542 Q07954 LRP1 Prolow-density lipoprotein receptor-related protein 1;Low-density lipoprotein receptor-related protein 1 85 kDa subunit;Low-density lipoprotein receptor-related protein 1 515 kDa subunit;Low-density lipoprotein receptor-related protein 1 intracellular domain yes yes 0 0 0 0 By MS/MS 8 0 1 1 47.957 47.864 3 0.067695 12770 20211116_3447_TMUAki_TMT10x_S_F8 35.624 22.832 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14112 1542 12915 74221 89612 89612 1 NCAAYLK Unmodified 838.40072 0.40072345 934;935;2078 P35579;P35579-2;P35580;P35580-2;P35580-5;P35580-3;P35580-4;Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-5;Q7Z406-4 MYH9;MYH10;MYH14 Myosin-9;Myosin-10;Myosin-14 no no 0 0 0 0 By MS/MS 6 0 1 1 35.35 35.332 2 0.019033 7610 20211116_3434_TMUAki_TMT10x_P_F6 84.244 38.932 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14113 934;935;2078 12916 74222 89613 89613 1 NCAVEFNFGQR Unmodified 1340.5932 0.59316868 2675 Q9BUJ2;Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2-3 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.6 0.49 2 3 2 3 49.822 49.977 2;3 6.1456E-20 13774 20211116_3445_TMUAki_TMT10x_S_F6 237.51 194.69 26402000 42980000 875030 44236000 43155000 50505000 32744000 46295000 39602000 39536000 42986000 24589000 40110000 3136500 45133000 41164000 50970000 33971000 47080000 40108000 38891000 41362000 7 7 5 7 7 7 7 7 7 7 7 12837000 19958000 377340 20590000 27642000 34996000 19143000 22001000 18988000 19208000 19641000 11955000 18625000 1563800 21176000 26310000 34471000 19857000 22941000 19347000 18874000 18926000 3 3 2 3 3 3 3 3 3 3 3 13565000 23022000 497690 23645000 15513000 15509000 13601000 24294000 20615000 20328000 23345000 12634000 21484000 1572700 23957000 14854000 16498000 14113000 24138000 20762000 20017000 22435000 4 4 3 4 4 4 4 4 4 4 4 2252700000 924620000 1328000000 14114 2675 12917 74223;74224;74225;74226;74227 89614;89615;89616;89617;89618;89619 89617 6 NCFASVFEK Unmodified 1100.4961 0.4960804 168 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 58.547 59.171 2 7.7408E-05 17386 20211116_3447_TMUAki_TMT10x_S_F8 104.42 49.04 19443000 36680000 97938 32835000 31587000 40097000 25004000 36399000 32593000 28348000 34930000 18104000 34212000 1837000 33878000 30125000 40318000 25942000 36954000 32909000 28017000 33623000 4 4 2 4 4 4 4 4 4 4 4 9397100 17616000 0 15755000 20382000 28904000 15604000 17844000 16232000 13686000 16970000 8749300 16431000 896610 16401000 19421000 28386000 16097000 18576000 16512000 13538000 16348000 2 2 0 2 2 2 2 2 2 2 2 10046000 19064000 97938 17080000 11205000 11194000 9400200 18555000 16361000 14661000 17960000 9354600 17781000 940390 17477000 10704000 11932000 9844800 18378000 16396000 14479000 17275000 2 2 2 2 2 2 2 2 2 2 2 1341400000 762170000 579220000 14115 168 12918 74228;74229;74230 89620;89621;89622;89623;89624 89624 5 NCGCLGASPNLEQLQEENLK Unmodified 2273.0416 0.041630178 1218 P54136 RARS Arginine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 60.85 60.849 3 2.4457E-13 19317 20211116_3442_TMUAki_TMT10x_S_F4 135.95 125.89 9154300 16495000 94790 15795000 11791000 15392000 10169000 12954000 11814000 11802000 13081000 8524200 15389000 874860 16157000 11270000 15650000 10451000 13260000 11992000 11573000 12580000 4 4 3 4 4 4 4 4 4 4 4 4294800 7700600 80350 7231300 6683800 10649000 5723800 6216800 5930600 6016600 5920800 3999400 7183700 455050 7461400 6388800 10538000 5862500 6538500 6023900 5884300 5711900 2 2 1 2 2 2 2 2 2 2 2 4859400 8794400 14439 8563900 5107500 4742500 4445200 6737500 5883400 5785000 7160400 4524700 8205300 419810 8695800 4881600 5111800 4588100 6721000 5967700 5689100 6867800 2 2 2 2 2 2 2 2 2 2 2 1020600000 659740000 360820000 14116 1218 12919 74231;74232 89625;89626;89627;89628 89627 4 NCIDITGVR Unmodified 1046.5179 0.51787847 1577 Q12907 LMAN2 Vesicular integral-membrane protein VIP36 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 40.108 40.306 2 6.4802E-06 10873 20211116_3442_TMUAki_TMT10x_S_F4 179.37 136.5 934600 1422700 4309.6 1782400 888750 730780 938200 846320 917380 743450 1295300 870240 1328800 80859 1777200 853680 811930 948430 851570 947590 730330 1237900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 934600 1422700 4309.6 1782400 888750 730780 938200 846320 917380 743450 1295300 870240 1328800 80859 1777200 853680 811930 948430 851570 947590 730330 1237900 1 1 1 1 1 1 1 1 1 1 1 172540000 0 172540000 14117 1577 12920 74233;74234;74235 89629;89630;89631 89631 3 NCIGDFLK Unmodified 965.46405 0.46405199 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.17 0.898 2 1 3 2 4 57.839 58.3 2 0.0018045 17248 20211116_3445_TMUAki_TMT10x_S_F6 106.42 47.506 12373000 21524000 285060 22085000 24787000 30176000 16891000 17923000 16634000 15116000 17868000 11523000 20086000 1465300 22612000 23585000 29967000 17538000 18758000 16978000 14879000 17198000 2 2 2 2 2 2 2 2 2 2 2 12373000 21524000 285060 22085000 24787000 30176000 16891000 17923000 16634000 15116000 17868000 11523000 20086000 1465300 22612000 23585000 29967000 17538000 18758000 16978000 14879000 17198000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 833470000 833470000 0 14118 2116 12921 74236;74237;74238;74239;74240;74241 89632;89633;89634;89635;89636;89637 89635 6 NCISTVVHQGLIR Unmodified 1495.7929 0.79293112 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 3 2.92 4 2 2 4 4 41.065 41.031 3;4 9.7838E-13 13394 20211116_3439_TMUAki_TMT10x_S_F1 159 142.09 12699000 20641000 155340 22706000 21153000 21339000 14652000 16834000 15011000 14966000 17912000 11825000 19268000 1246300 22998000 20124000 21722000 15214000 17287000 15359000 14693000 17190000 9 9 5 9 9 9 9 9 9 9 9 6884200 11065000 21701 11920000 16151000 16590000 9551000 9546000 8267300 8218600 9573700 6409800 10328000 686650 12170000 15320000 16455000 9993400 10021000 8513100 8081400 9195000 5 5 2 5 5 5 5 5 5 5 5 5815000 9576500 133640 10786000 5002000 4749200 5101400 7288400 6744100 6746900 8338600 5415000 8940400 559620 10828000 4804400 5267500 5220200 7266000 6845700 6611700 7994600 4 4 3 4 4 4 4 4 4 4 4 1402100000 974880000 427260000 14119 1433 12922 74242;74243;74244;74245;74246;74247;74248;74249 89638;89639;89640;89641;89642;89643;89644;89645;89646 89643 9 NCIVLIDSTPYR Unmodified 1449.7286 0.72859953 1338 P62241 RPS8 40S ribosomal protein S8 yes yes 0 0 0 0 By MS/MS By MS/MS 6.36 0.881 2 4 4 1 5 6 56.993 57.274 2;3 2.5805E-15 16780 20211116_3445_TMUAki_TMT10x_S_F6 193.21 124.82 120670000 205020000 4819.4 209550000 151480000 177530000 130110000 128150000 107350000 123380000 153920000 112340000 191320000 8133200 212980000 144560000 181720000 132380000 132640000 111860000 120700000 147040000 15 15 1 15 15 15 15 15 15 15 15 64169000 107840000 4819.4 110960000 101100000 126560000 78618000 69224000 57247000 66332000 80023000 59739000 100640000 4727200 113210000 96298000 126680000 80259000 73189000 59982000 64903000 76490000 8 8 1 8 8 8 8 8 8 8 8 56500000 97184000 0 98592000 50384000 50973000 51488000 58926000 50108000 57047000 73894000 52597000 90688000 3406000 99768000 48261000 55044000 52126000 59454000 51881000 55793000 70547000 7 7 0 7 7 7 7 7 7 7 7 16969000000 8440300000 8528700000 14120 1338 12923 74250;74251;74252;74253;74254;74255;74256;74257;74258;74259;74260 89647;89648;89649;89650;89651;89652;89653;89654;89655;89656;89657;89658;89659;89660 89657 14 NCLTNFHGMDLTR Oxidation (M) 1593.7028 0.70279548 1305 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 1 0 By MS/MS By MS/MS 6.52 1.02 1 2 10 7 5 20 5 32.755 32.927 2;3 2.687E-07 9803 20211116_3433_TMUAki_TMT10x_P_F5 120.29 105.5 12338000 22026000 333180 24925000 29470000 26722000 15643000 16339000 16016000 13647000 18304000 11490000 20564000 1539600 25250000 27929000 26878000 16602000 17056000 16358000 13440000 17586000 30 30 19 30 30 30 30 30 30 30 30 10267000 18257000 321860 20731000 27877000 25395000 14181000 14317000 13998000 11958000 15803000 9562000 17045000 1379600 21044000 26405000 25334000 15095000 15045000 14313000 11776000 15189000 25 25 16 25 25 25 25 25 25 25 25 2070900 3768900 11318 4194700 1593000 1327100 1461700 2022600 2017800 1689800 2500500 1928200 3518300 159970 4206300 1523900 1544500 1506700 2011400 2045600 1664100 2397200 5 5 3 5 5 5 5 5 5 5 5 2808100000 2121700000 686350000 14121 1305 12924 74261;74262;74263;74264;74265;74266;74267;74268;74269;74270;74271;74272;74273;74274;74275;74276;74277;74278;74279;74280;74281;74282;74283;74284;74285 89661;89662;89663;89664;89665;89666;89667;89668;89669;89670;89671;89672;89673;89674;89675;89676;89677;89678;89679;89680;89681;89682;89683;89684;89685;89686;89687;89688;89689;89690 89662 1762 30 NCLTNFHGMDLTR Unmodified 1577.7079 0.70788086 1305 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 0 0 By MS/MS By MS/MS 6.33 1.15 3 2 2 2 5 4 47.529 47.745 3 9.5706E-25 14923 20211116_3446_TMUAki_TMT10x_S_F7 218.6 203.97 36406000 58854000 530590 67662000 54365000 47830000 41703000 31944000 27582000 29810000 48070000 33899000 54950000 3555000 68107000 51828000 49593000 42526000 33216000 29405000 29202000 45737000 12 12 9 12 12 12 12 12 12 12 12 19731000 31438000 341370 34914000 40590000 36432000 28200000 16437000 13717000 15274000 26301000 18373000 29348000 2053300 35395000 38617000 36572000 28804000 17687000 15035000 14965000 24982000 6 6 5 6 6 6 6 6 6 6 6 16674000 27415000 189220 32747000 13775000 11398000 13503000 15506000 13865000 14536000 21769000 15527000 25601000 1501700 32712000 13211000 13021000 13722000 15529000 14370000 14237000 20755000 6 6 4 6 6 6 6 6 6 6 6 6786600000 4244700000 2541900000 14122 1305 12924 74286;74287;74288;74289;74290;74291;74292;74293;74294 89691;89692;89693;89694;89695;89696;89697;89698;89699;89700;89701;89702;89703;89704 89702 14 NCPFQLCSPIRPPK Unmodified 1712.8491 0.84906579 1895 Q4J6C6;Q4J6C6-4;Q4J6C6-3 PREPL Prolyl endopeptidase-like yes no 0 0 0 1 By MS/MS 4 0 1 1 52.81 52.976 3 6.6387E-10 15596 20211116_3431_TMUAki_TMT10x_P_F4 118.51 99.184 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14123 1895 12925 74295 89705 89705 1 NCPHIVVGTPGR Unmodified 1305.6612 0.66118866 1665 Q13838;Q13838-2 DDX39B Spliceosome RNA helicase DDX39B yes no 0 0 0 0 By MS/MS By MS/MS 6 1 1 1 1 1 31.727 31.664 3 0.0010641 7340 20211116_3433_TMUAki_TMT10x_P_F5 75.89 58.07 512470 804080 3836 823170 819980 971300 550980 545560 587970 446860 731200 477180 750360 50369 840640 779710 970790 574090 573220 601620 440490 700930 1 1 1 1 1 1 1 1 1 1 1 512470 804080 3836 823170 819980 971300 550980 545560 587970 446860 731200 477180 750360 50369 840640 779710 970790 574090 573220 601620 440490 700930 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 47835000 47835000 0 14124 1665 12926 74296;74297 89706;89707 89706 2 NCPHVVVGTPGR Unmodified 1291.6455 0.6455386 63 O00148;O00148-2;O00148-3 DDX39A ATP-dependent RNA helicase DDX39A yes no 0 0 0 0 By MS/MS 5 0 1 1 29.704 29.637 3 0.0026162 6545 20211116_3433_TMUAki_TMT10x_P_F5 66.989 46.118 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14125 63 12927 74298 89708 89708 1 NCSSFLIK Unmodified 967.4797 0.47970205 1053 P46779;P46779-2;P46779-3;P46779-4;P46779-5 RPL28 60S ribosomal protein L28 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 49.864 49.858 2 0.0027689 14090 20211116_3436_TMUAki_TMT10x_P_F8 105.52 58.454 4120600 6201800 0 7770400 15049000 10988000 5755800 5467000 4842200 4590200 6595200 3835900 5792800 394470 7864400 14190000 10871000 6296000 5810900 5028300 4519100 6307900 1 1 0 1 1 1 1 1 1 1 1 4120600 6201800 0 7770400 15049000 10988000 5755800 5467000 4842200 4590200 6595200 3835900 5792800 394470 7864400 14190000 10871000 6296000 5810900 5028300 4519100 6307900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 857210000 627110000 230110000 14126 1053 12928 74299;74300;74301;74302 89709;89710;89711 89710 3 NCSSFLIKR Unmodified 1123.5808 0.58081308 1053 P46779;P46779-2;P46779-3;P46779-4;P46779-5 RPL28 60S ribosomal protein L28 yes no 0 0 0 1 By MS/MS By MS/MS 3.25 0.829 1 1 2 1 3 38.258 38.257 3 7.7044E-05 12510 20211116_3441_TMUAki_TMT10x_S_F3 138.22 102.27 5426800 8649600 35861 8227800 8814800 7692700 5819400 6364300 5697500 5063900 7794700 5052700 8069400 467680 8415500 8374900 7839900 6055800 6498900 5876000 4999200 7454300 5 5 3 5 5 5 5 5 5 5 5 1746900 2794000 25216 2755500 4964800 4375200 2353700 2418900 2182100 1933500 2965100 1626700 2607000 213400 2838000 4696300 4313300 2518700 2543500 2255200 1908400 2836100 1 1 1 1 1 1 1 1 1 1 1 3680000 5855600 10645 5472300 3850100 3317500 3465700 3945500 3515300 3130300 4829600 3426000 5462500 254290 5577500 3678500 3526700 3537100 3955400 3620700 3090800 4618200 4 4 2 4 4 4 4 4 4 4 4 292910000 90696000 202210000 14127 1053 12929 74303;74304;74305;74306 89712;89713;89714;89715;89716 89714 5 NCTCGLAEELEK Unmodified 1422.6119 0.61191479 1972 Q6FI81;Q6FI81-3;Q6FI81-2 CIAPIN1 Anamorsin yes no 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 51.033 50.933 3 0.00016806 16429 20211116_3430_TMUAki_TMT10x_P_F3 86.944 71.405 1484900 2311700 0 2519600 2622300 2764400 1850900 1667100 1578500 1474500 1904900 1382500 2157800 131590 2559400 2494500 2776400 1909400 1744600 1629300 1448000 1827500 1 1 0 1 1 1 1 1 1 1 1 1484900 2311700 0 2519600 2622300 2764400 1850900 1667100 1578500 1474500 1904900 1382500 2157800 131590 2559400 2494500 2776400 1909400 1744600 1629300 1448000 1827500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 123200000 123200000 0 14128 1972 12930 74307;74308 89717;89718 89717 2 NCVAIAADRR Unmodified 1144.5771 0.57712468 1112 P49720 PSMB3 Proteasome subunit beta type-3 yes yes 0 0 0 1 By MS/MS 5 0 1 1 28.179 28.106 3 0.049155 5945 20211116_3433_TMUAki_TMT10x_P_F5 51.162 14.844 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14129 1112 12931 74309 89719 89719 1 NCVLLSRPEISTDER Unmodified 1787.8836 0.88359662 389 O94855;O94855-2 SEC24D Protein transport protein Sec24D yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 41.803 41.972 3 8.0202E-10 11493 20211116_3442_TMUAki_TMT10x_S_F4 133.86 98.121 2037600 3696900 0 4184800 1720900 1565000 1352400 3470700 3476500 2968300 3598300 1897000 3451400 145610 4195500 1639600 1798800 1456800 3417600 3448100 2919700 3467400 3 3 0 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2037600 3696900 0 4184800 1720900 1565000 1352400 3470700 3476500 2968300 3598300 1897000 3451400 145610 4195500 1639600 1798800 1456800 3417600 3448100 2919700 3467400 3 3 0 3 3 3 3 3 3 3 3 158360000 0 158360000 14130 389 12932 74310;74311 89720;89721;89722 89720 3 NCWQNYLDFHR Unmodified 1551.6677 0.6677306 676 P14854 COX6B1 Cytochrome c oxidase subunit 6B1 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 55.788 56.134 3 1.3915E-11 16101 20211116_3447_TMUAki_TMT10x_S_F8 171.62 152.79 7767100 12203000 40021 12103000 8500200 8543500 7128300 8166600 7649900 6632900 9171400 7231700 11386000 629900 12300000 8114400 8914600 7318400 8276300 7813600 6541300 8800200 3 3 1 3 3 3 3 3 3 3 3 2459700 3952300 0 4017300 3242100 4503500 2700700 2762400 2745100 2143000 3129300 2290100 3688200 196260 4101000 3093900 4518700 2769200 2878000 2804400 2118500 3006800 1 1 0 1 1 1 1 1 1 1 1 5307400 8250500 40021 8085200 5258100 4040000 4427500 5404200 4904800 4490000 6042100 4941600 7697900 433630 8199400 5020500 4395900 4549300 5398400 5009200 4422800 5793400 2 2 1 2 2 2 2 2 2 2 2 1236600000 428540000 808080000 14131 676 12933 74312;74313 89723;89724;89725 89724 3 NCYPSPLNYYNFPK Unmodified 1775.7977 0.79774172 1201 P53582 METAP1 Methionine aminopeptidase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 54.611 54.448 2;3 2.6385E-19 22120 20211116_3440_TMUAki_TMT10x_S_F2 149.96 136.05 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14132 1201 12934 74314;74315;74316 89726;89727;89728 89728 3 NDANPETHAFVTSPEIVTALAIAGTLK Unmodified 2779.4392 0.43922403 2605 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 79.954 79.962 3 1.0665E-12 27827 20211116_3435_TMUAki_TMT10x_P_F7 112.11 103.18 3679400 6430000 208.57 5810100 3749300 5601300 4550100 3495800 3345100 3914800 5032900 3425700 5997500 286240 5967900 3613800 5671800 4536200 3673100 3515700 3806100 4802800 3 3 1 3 3 3 3 3 3 3 3 2919500 5125500 208.57 4664900 2635200 4745400 3471900 2845400 2618900 3155500 3970300 2718200 4780900 224100 4792700 2546900 4786700 3451500 2998200 2749600 3069000 3788100 2 2 1 2 2 2 2 2 2 2 2 759950 1304500 0 1145200 1114000 855830 1078200 650420 726200 759310 1062600 707540 1216600 62142 1175200 1066900 885100 1084700 674930 766130 737090 1014600 1 1 0 1 1 1 1 1 1 1 1 985240000 735240000 250000000 14133 2605 12935 74317;74318;74319 89729;89730;89731 89729 3 NDASEVVLAGER Unmodified 1258.6153 0.61534391 2565 Q96T88;Q96T88-2 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 0 0 0 0 By MS/MS 3 0 1 1 37.307 37.333 2 0.052888 10898 20211116_3430_TMUAki_TMT10x_P_F3 51.841 9.6803 93742 121030 3248.2 159620 178910 161000 112290 84356 81747 59100 119080 87307 113080 11992 160130 170070 162210 116440 88879 85825 58761 113720 1 1 1 1 1 1 1 1 1 1 1 93742 121030 3248.2 159620 178910 161000 112290 84356 81747 59100 119080 87307 113080 11992 160130 170070 162210 116440 88879 85825 58761 113720 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2910500 2910500 0 14134 2565 12936 74320 89732 89732 1 NDEELNK Unmodified 860.38758 0.3875758 592;690;2391;2134 Q6FI13;P0C0S8;Q99878;Q9BTM1;Q16777;Q96KK5;P20671;Q9BTM1-2;P16104;Q8IUE6;Q93077;Q7L7L0;P04908 HIST2H2AA3;HIST1H2AG;HIST1H2AJ;H2AFJ;HIST2H2AC;HIST1H2AH;HIST1H2AD;H2AFX;HIST2H2AB;HIST1H2AC;HIST3H2A;HIST1H2AB Histone H2A type 2-A;Histone H2A type 1;Histone H2A type 1-J;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-H;Histone H2A type 1-D;Histone H2AX;Histone H2A type 2-B;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E no no 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 31.965 31.856 2 0.0020981 8217 20211116_3429_TMUAki_TMT10x_P_F2 169.26 110.65 10218000 15976000 1890.2 11259000 5702100 18350000 5974400 7190200 4866800 6207600 11116000 9512700 14890000 590220 11925000 5461700 18006000 6011500 7844300 5221300 6103100 10530000 4 4 1 4 4 4 4 4 4 4 4 5087700 8065200 0 6286300 1981900 9167700 969480 4103500 1854000 3194800 5485100 4735800 7519100 209100 6581800 1863900 9047900 1063700 4400500 1976300 3157600 5178900 2 2 0 2 2 2 2 2 2 2 2 5130600 7911100 1890.2 4972300 3720200 9182700 5004900 3086600 3012800 3012800 5631100 4776900 7370900 381120 5343100 3597800 8958000 4947800 3443700 3245100 2945500 5351000 2 2 1 2 2 2 2 2 2 2 2 551510000 340050000 211460000 14135 592;690;2134;2391 12937 74321;74322;74323;74324 89733;89734;89735;89736 89734 4 NDEELNKLLGGVTIAQGGVLPNIQAVLLPK Unmodified 3112.7496 0.74959955 690;2134 P16104;Q8IUE6 H2AFX;HIST2H2AB Histone H2AX;Histone H2A type 2-B no no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 80.957 80.946 4 4.2231E-20 28121 20211116_3429_TMUAki_TMT10x_P_F2 127.16 115.75 8788800 14466000 27305 12804000 9218100 18093000 10324000 14927000 12562000 12017000 11878000 8181600 13492000 524520 13259000 8852900 18034000 10483000 15249000 12657000 11856000 11479000 2 2 1 2 2 2 2 2 2 2 2 7652100 12081000 0 10629000 7433400 16577000 8783300 13162000 10932000 10316000 10172000 7123000 11268000 395760 11035000 7146200 16444000 8905200 13470000 11000000 10193000 9836200 1 1 0 1 1 1 1 1 1 1 1 1136700 2385200 27305 2174900 1784700 1515500 1540400 1764400 1629700 1700500 1705400 1058600 2224900 128760 2223700 1706700 1590100 1578000 1779400 1656700 1663400 1642800 1 1 1 1 1 1 1 1 1 1 1 1834200000 1349500000 484700000 14136 690;2134 12938 74325;74326 89737;89738 89737 2 NDEELNKLLGK Unmodified 1271.6721 0.67213051 592 Q6FI13;P0C0S8;Q99878;Q9BTM1;Q16777;Q96KK5;P20671;Q9BTM1-2 HIST2H2AA3;HIST1H2AG;HIST1H2AJ;H2AFJ;HIST2H2AC;HIST1H2AH;HIST1H2AD Histone H2A type 2-A;Histone H2A type 1;Histone H2A type 1-J;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-H;Histone H2A type 1-D yes no 0 0 0 1 By MS/MS By MS/MS 5.67 1.15 2 2 2 3 4 5 58.119 58.334 3 8.2677E-07 18278 20211116_3442_TMUAki_TMT10x_S_F4 132.47 104.15 27804000 52301000 400410 45385000 132050000 210740000 84161000 399120000 262270000 208230000 147110000 25890000 48776000 3882300 49261000 125420000 208720000 93386000 390570000 254930000 211230000 145480000 8 8 5 8 8 8 8 8 8 8 8 19658000 34937000 176280 31434000 117410000 192350000 74146000 234160000 189430000 133510000 95239000 18303000 32587000 2907100 34721000 111490000 186970000 81041000 232950000 184320000 134540000 94789000 5 5 2 5 5 5 5 5 5 5 5 8146500 17363000 224130 13951000 14640000 18391000 10014000 164960000 72838000 74717000 51876000 7586900 16189000 975230 14540000 13935000 21756000 12345000 157620000 70607000 76690000 50691000 3 3 3 3 3 3 3 3 3 3 3 11829000000 7075700000 4752900000 14137 592 12939 74327;74328;74329;74330;74331;74332;74333;74334;74335 89739;89740;89741;89742;89743;89744;89745;89746;89747 89744 9 NDEELNKLLGR Unmodified 1299.6783 0.67827852 2391 Q93077;Q7L7L0;P04908 HIST1H2AC;HIST3H2A;HIST1H2AB Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E yes no 0 0 0 1 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 52.69 52.83 3 1.4407E-06 15987 20211116_3442_TMUAki_TMT10x_S_F4 125.82 105.61 22064000 39506000 847230 35043000 39050000 65416000 33830000 108310000 76134000 70612000 55094000 20550000 36847000 2856700 36519000 37363000 65732000 35897000 106830000 74855000 70517000 53798000 3 3 3 3 3 3 3 3 3 3 3 9247200 17428000 808290 16270000 19045000 49145000 21179000 53295000 40446000 33640000 25671000 8616100 16258000 1657200 17171000 18364000 48131000 21967000 53389000 39780000 33664000 25221000 1 1 1 1 1 1 1 1 1 1 1 12816000 22078000 38946 18773000 20005000 16271000 12651000 55015000 35687000 36972000 29423000 11934000 20589000 1199500 19348000 18999000 17601000 13930000 53440000 35075000 36852000 28578000 2 2 2 2 2 2 2 2 2 2 2 1384500000 693300000 691220000 14138 2391 12940 74336;74337;74338 89748;89749 89749 2 NDFEIVLPENAEK Unmodified 1516.7409 0.74093835 2574 Q99459 CDC5L Cell division cycle 5-like protein yes yes 0 0 0 0 By MS/MS 3 0 1 1 66.562 66.099 3 0.023953 23718 20211116_3441_TMUAki_TMT10x_S_F3 45.722 29.148 4846300 8972500 71834 7054400 5311600 5893600 4700200 7119100 6874400 6363600 7153700 4512900 8365100 475260 7314800 5082000 6103200 4866900 7153700 6908300 6246100 6892300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4846300 8972500 71834 7054400 5311600 5893600 4700200 7119100 6874400 6363600 7153700 4512900 8365100 475260 7314800 5082000 6103200 4866900 7153700 6908300 6246100 6892300 1 1 1 1 1 1 1 1 1 1 1 238460000 0 238460000 14139 2574 12941 74339 89750 89750 1 NDFGNFFGSAVTKPSSSVTPR Unmodified 2214.0705 0.070545766 2145 Q8IWR0 ZC3H7A Zinc finger CCCH domain-containing protein 7A yes yes 0 0 0 1 By MS/MS 3 0 1 1 63.025 62.582 3 1.9076E-19 22263 20211116_3441_TMUAki_TMT10x_S_F3 153.25 144.54 5222400 9623600 39875 8015800 6792600 5960600 5931600 6615800 5764900 6314900 7744000 4862800 8973900 487770 8260200 6493600 6213800 6056600 6684400 5942400 6179800 7409000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5222400 9623600 39875 8015800 6792600 5960600 5931600 6615800 5764900 6314900 7744000 4862800 8973900 487770 8260200 6493600 6213800 6056600 6684400 5942400 6179800 7409000 2 2 1 2 2 2 2 2 2 2 2 535640000 0 535640000 14140 2145 12942 74340 89751;89752 89751 2 NDFTEEEEAQVR Unmodified 1465.6321 0.63211618 1402 P63208 SKP1 S-phase kinase-associated protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 4 2 2 38.801 38.745 2;3 4.2935E-73 9485 20211116_3428_TMUAki_TMT10x_P_F1 335.67 317.41 2435000 3796400 29528 5182100 4921300 4269700 2897400 3564000 4344200 2847300 4511400 2267100 3547600 222300 5175100 4667000 4390100 3089600 3637800 4362100 2810300 4346800 5 5 2 5 5 5 5 5 5 5 5 868590 1430100 25832 1975000 3780500 3017600 1606500 1359000 1701800 1042800 1746100 808920 1336400 135800 1991900 3571800 2972600 1746200 1456000 1728700 1031500 1683100 2 2 1 2 2 2 2 2 2 2 2 1566400 2366300 3696.4 3207200 1140800 1252100 1290800 2205000 2642400 1804500 2765300 1458200 2211200 86500 3183200 1095200 1417500 1343400 2181800 2633400 1778800 2663800 3 3 1 3 3 3 3 3 3 3 3 395280000 226320000 168960000 14141 1402 12943 74341;74342;74343;74344 89753;89754;89755;89756;89757 89753 5 NDFTEEEEAQVRK Unmodified 1593.7271 0.7270792 1402 P63208 SKP1 S-phase kinase-associated protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 1.67 0.943 2 1 1 2 38.74 38.612 3 7.5053E-12 9391 20211116_3428_TMUAki_TMT10x_P_F1 153.08 44.329 2186000 3484600 25132 5844400 4092300 2630400 2405700 2056200 2586200 1751600 3553600 2035600 3260300 230940 5747600 3883000 2865000 2534000 2110500 2657500 1723200 3398100 3 3 2 3 3 3 3 3 3 3 3 724630 1155100 0 1961600 3020600 1640700 1061000 693820 895860 546010 1119800 674700 1080900 91814 1939400 2847000 1670000 1173600 748790 926550 539350 1073300 1 1 0 1 1 1 1 1 1 1 1 1461400 2329500 25132 3882800 1071700 989650 1344700 1362400 1690400 1205600 2433700 1360900 2179400 139120 3808100 1036000 1195000 1360400 1361700 1730900 1183900 2324700 2 2 2 2 2 2 2 2 2 2 2 983640000 431240000 552410000 14142 1402 12944 74345;74346;74347 89758;89759;89760 89758 3 NDIASHPPVEGSYAPR Unmodified 1708.8169 0.81689726 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.25 0.829 1 1 2 2 2 34.567 34.618 3 6.336E-08 8293 20211116_3431_TMUAki_TMT10x_P_F4 116.81 94.609 1462800 2280900 12456 2549100 3792600 3412000 1898300 2318300 2575200 1781500 2362100 1362100 2129300 164890 2594500 3589700 3398100 2045600 2396200 2582600 1762000 2285200 3 3 2 3 3 3 3 3 3 3 3 1285400 1978900 12456 2234000 3614600 3230700 1748200 2023800 2244000 1563300 2078300 1196900 1847500 150800 2275900 3419700 3202700 1886200 2104800 2255300 1545800 2010000 2 2 2 2 2 2 2 2 2 2 2 177430 301980 0 315140 178050 181270 150100 294490 331240 218180 283760 165200 281830 14094 318560 169980 195470 159320 291420 327370 216230 275210 1 1 0 1 1 1 1 1 1 1 1 388180000 375230000 12955000 14143 2048 12945 74348;74349;74350;74351 89761;89762;89763;89764 89762 4 NDIHEDNLLECPPEELAR Unmodified 2162.9902 0.99024653 1712 Q14527;Q14527-2 HLTF Helicase-like transcription factor yes no 0 0 0 0 By MS/MS 1 0 1 1 52.797 52.797 3 2.4298E-08 15187 20211116_3428_TMUAki_TMT10x_P_F1 111.18 105.51 795620 1363900 37664 1386400 1767400 2428000 1471200 1519600 1418000 1227800 1359500 741080 1272700 114670 1428300 1689500 2388800 1506200 1582100 1442800 1211200 1313300 1 1 1 1 1 1 1 1 1 1 1 795620 1363900 37664 1386400 1767400 2428000 1471200 1519600 1418000 1227800 1359500 741080 1272700 114670 1428300 1689500 2388800 1506200 1582100 1442800 1211200 1313300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 270580000 270580000 0 14144 1712 12946 74352 89765 89765 1 NDKDKPLPPLLAR Unmodified 1475.846 0.84601255 1735 Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 0 2 By MS/MS 8 0 1 1 44.516 44.672 4 0.00059856 11943 20211116_3436_TMUAki_TMT10x_P_F8 81.632 68.204 1873500 3341600 33030 3091100 6223300 5785300 3082100 3728500 3583100 2915000 3383100 1744400 3117100 215130 3211400 5888200 5681300 3306100 3870300 3616200 2880400 3269800 2 2 1 2 2 2 2 2 2 2 2 1873500 3341600 33030 3091100 6223300 5785300 3082100 3728500 3583100 2915000 3383100 1744400 3117100 215130 3211400 5888200 5681300 3306100 3870300 3616200 2880400 3269800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 99115000 99115000 0 14145 1735 12947 74353 89766;89767 89767 2 NDKPLPSATARPNTFMR Oxidation (M) 1930.9683 0.9683293 216 O43432;O43432-4;O43432-3 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 yes no 0 0 1 2 By MS/MS 2 0 1 1 33.71 33.488 4 0.013857 8909 20211116_3429_TMUAki_TMT10x_P_F2 48.376 29.78 304210 547480 15919 617270 907100 746100 425460 353840 409380 315280 533580 283370 511120 48501 626720 858630 743320 456250 378400 421580 309510 510880 1 1 1 1 1 1 1 1 1 1 1 304210 547480 15919 617270 907100 746100 425460 353840 409380 315280 533580 283370 511120 48501 626720 858630 743320 456250 378400 421580 309510 510880 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37021000 37021000 0 14146 216 12948 74354 89768 89768 174 1 NDKSEEEQSSSSVK Unmodified 1552.6853 0.68527397 545 P07910-2;P07910-4;P07910;P07910-3 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 0 0 0 1 By MS/MS 3 0 1 1 29.54 29.277 3 1.9001E-20 8795 20211116_3441_TMUAki_TMT10x_S_F3 179.46 128.19 162150 247860 0 139450 105090 286120 161190 77386 82759 75232 176830 150980 230870 12310 152110 102160 277740 158140 89150 90963 73564 167670 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 162150 247860 0 139450 105090 286120 161190 77386 82759 75232 176830 150980 230870 12310 152110 102160 277740 158140 89150 90963 73564 167670 1 1 0 1 1 1 1 1 1 1 1 7590000 0 7590000 14147 545 12949 74355 89769 89769 1 NDLAVVDVR Unmodified 999.53491 0.53490874 729 P19338 NCL Nucleolin yes yes 0 0 0 0 By MS/MS By MS/MS 3 1.76 2 2 2 2 1 4 5 43.9 43.91 2 7.4357E-05 11569 20211116_3428_TMUAki_TMT10x_P_F1 142.98 74.56 31914000 50612000 355040 53507000 51143000 45871000 36440000 41739000 42958000 36745000 49040000 29716000 47237000 3111700 54267000 48682000 47109000 37933000 42497000 43633000 36092000 47119000 12 12 7 12 12 12 12 12 12 12 12 14389000 21546000 5610.2 23784000 33541000 30896000 18848000 18688000 19585000 16436000 22418000 13397000 20113000 1383300 24212000 31787000 30762000 19909000 19550000 19992000 16145000 21539000 5 5 1 5 5 5 5 5 5 5 5 17524000 29066000 349430 29723000 17602000 14975000 17592000 23051000 23374000 20309000 26622000 16319000 27124000 1728400 30055000 16895000 16347000 18024000 22947000 23641000 19948000 25581000 7 7 6 7 7 7 7 7 7 7 7 7893400000 4224100000 3669300000 14148 729 12950 74356;74357;74358;74359;74360;74361;74362;74363;74364 89770;89771;89772;89773;89774;89775;89776;89777;89778;89779;89780;89781 89770 12 NDLSPASSGNAVYDFFIGR Unmodified 2028.9541 0.95411902 1732 Q14739 LBR Lamin-B receptor yes yes 0 0 0 0 By MS/MS By MS/MS 7.13 0.957 1 3 4 7 9 6 71.603 71.627 2;3 1.8967E-71 27804 20211116_3446_TMUAki_TMT10x_S_F7 294.97 261.56 38447000 67110000 165460 57300000 45187000 62081000 51414000 41862000 41161000 44608000 52509000 35795000 62584000 2831500 59220000 43455000 62495000 51508000 43665000 42726000 43453000 50302000 13 13 5 13 13 13 13 13 13 13 13 22662000 37969000 11066 32254000 20763000 40831000 26393000 24157000 23588000 25923000 30237000 21097000 35407000 1389700 33436000 20020000 40693000 26390000 25455000 24356000 25245000 28963000 8 8 3 8 8 8 8 8 8 8 8 15785000 29142000 154400 25046000 24424000 21250000 25021000 17705000 17573000 18685000 22272000 14698000 27177000 1441800 25784000 23434000 21802000 25118000 18209000 18371000 18208000 21340000 5 5 2 5 5 5 5 5 5 5 5 13751000000 6190800000 7560300000 14149 1732 12951 74365;74366;74367;74368;74369;74370;74371;74372;74373;74374;74375;74376;74377;74378;74379 89782;89783;89784;89785;89786;89787;89788;89789;89790;89791;89792;89793;89794;89795 89792 14 NDPQSITADDLHQLLVVAR Unmodified 2104.0913 0.091281208 2663 Q9BTE3;Q9BTE3-2;Q9BTE3-3 MCMBP Mini-chromosome maintenance complex-binding protein yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.943 2 1 2 1 71.945 71.894 3 0.0024139 23820 20211116_3442_TMUAki_TMT10x_S_F4 62.099 43.503 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14150 2663 12952 74380;74381;74382 89796;89797;89798 89798 3 NDQDTWDYTNPNLSGQGDPGSNPNKR Unmodified 2889.255 0.25500509 677 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 1 By MS/MS By matching 4 0 2 1 1 45.882 46.046 4 2.6941E-17 12802 20211116_3431_TMUAki_TMT10x_P_F4 122.79 116.5 522320 1006200 0 1130900 1910300 1639200 1483200 583720 705880 587290 934230 486230 939350 50200 1152500 1820200 1614900 1502700 646870 760230 573430 894150 1 1 0 1 1 1 1 1 1 1 1 522320 1006200 0 1130900 1910300 1639200 1483200 583720 705880 587290 934230 486230 939350 50200 1152500 1820200 1614900 1502700 646870 760230 573430 894150 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 314250000 260890000 53354000 14151 677 12953 74383;74384 89799 89799 1 NDSFTTCIELGK Unmodified 1383.634 0.63403044 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 4 0 3 1 2 58.628 58.611 2;3 6.408E-16 18385 20211116_3442_TMUAki_TMT10x_S_F4 179.35 162.14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14152 1475 12954 74385;74386;74387 89800;89801;89802 89802 3 NDSLAGVVIADNEYPSR Unmodified 1818.8748 0.87480607 192 O15498;O15498-2 YKT6 Synaptobrevin homolog YKT6 yes no 0 0 0 0 By MS/MS 3 0 1 1 58.65 58.404 3 0.0001435 19519 20211116_3430_TMUAki_TMT10x_P_F3 77.137 67.855 6918400 10380000 50987 11258000 9787200 13419000 8952100 7378800 6115100 6886700 8712300 6442100 9689300 661280 11455000 9366500 13401000 9036300 7792300 6437400 6746200 8324000 2 2 2 2 2 2 2 2 2 2 2 6918400 10380000 50987 11258000 9787200 13419000 8952100 7378800 6115100 6886700 8712300 6442100 9689300 661280 11455000 9366500 13401000 9036300 7792300 6437400 6746200 8324000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 379350000 379350000 0 14153 192 12955 74388 89803;89804 89803 2 NDSVIVDTFHGLFK Unmodified 1590.8042 0.80420731 1163 P51784;Q13107;Q13107-2 USP11;USP4 Ubiquitin carboxyl-terminal hydrolase 11;Ubiquitin carboxyl-terminal hydrolase 4 yes no 0 0 0 0 By MS/MS 7 0 1 1 75.537 75.644 3 8.4776E-10 26435 20211116_3446_TMUAki_TMT10x_S_F7 113.65 93.227 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14154 1163 12956 74389 89805 89805 1 NDSVVAGGGAIEMELSK Oxidation (M) 1691.8036 0.80361496 2609 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 1 0 By MS/MS By MS/MS 3 0.816 1 1 1 1 2 59.081 58.671 3 0.00016552 19269 20211116_3429_TMUAki_TMT10x_P_F2 71.742 60.128 3853500 7005500 123620 6904500 4706900 4049600 4269100 4033200 3699400 4355400 5792000 3588900 6536500 446640 7008200 4509700 4301200 4335600 4111100 3862600 4240400 5522600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3853500 7005500 123620 6904500 4706900 4049600 4269100 4033200 3699400 4355400 5792000 3588900 6536500 446640 7008200 4509700 4301200 4335600 4111100 3862600 4240400 5522600 1 1 1 1 1 1 1 1 1 1 1 309300000 0 309300000 14155 2609 12957 74390;74391;74392 89806;89807;89808 89806 2845 3 NDTKEDVFVHQTAIK Unmodified 1743.8792 0.87916317 1410;699 P67809;Q9Y2T7;P16989;P16989-3;P16989-2 YBX1;YBX2;YBX3 Nuclease-sensitive element-binding protein 1;Y-box-binding protein 2;Y-box-binding protein 3 no no 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 42.439 42.542 4 1.6202E-09 10576 20211116_3444_TMUAki_TMT10x_S_F5 128.9 103.45 5958700 9053200 28278 11109000 12643000 12991000 7187400 8176100 9554100 6936600 8917400 5547800 8455300 541190 11216000 11982000 13010000 7649000 8518800 9593500 6825700 8622000 4 4 1 4 4 4 4 4 4 4 4 4066900 6082200 28278 7410000 11025000 11203000 5560500 5571000 6624300 4664700 5963700 3786600 5680300 427350 7522400 10434000 11052000 5958900 5921300 6669100 4593100 5773400 2 2 1 2 2 2 2 2 2 2 2 1891900 2971000 0 3698900 1617500 1788400 1626900 2605100 2929800 2271900 2953800 1761200 2775000 113840 3693500 1548600 1958100 1690100 2597500 2924400 2232600 2848600 2 2 0 2 2 2 2 2 2 2 2 470790000 331220000 139580000 14156 1410;699 12958 74393;74394;74395;74396 89809;89810;89811;89812 89811 4 NDVLDSLGISPDLLPEDFVR Unmodified 2213.1216 0.12157828 3076 Q9UBE0 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed yes yes 0 0 0 0 By MS/MS 2.8 1.17 1 1 1 2 5 81.513 81.5 2;3 3.5065E-32 27312 20211116_3431_TMUAki_TMT10x_P_F4 183.7 164.37 5134300 7654800 62456 8117100 5040500 9870100 6802700 4125600 4100900 4632200 6439100 4780800 7144500 390200 8274300 4879700 9817800 6724500 4499700 4373200 4503200 6139200 4 4 2 4 4 4 4 4 4 4 4 5134300 7654800 62456 8117100 5040500 9870100 6802700 4125600 4100900 4632200 6439100 4780800 7144500 390200 8274300 4879700 9817800 6724500 4499700 4373200 4503200 6139200 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2166300000 2166300000 0 14157 3076 12959 74397;74398;74399;74400;74401 89813;89814;89815;89816;89817 89817 5 NDVMNLLESAGFSR Unmodified 1551.7351 0.73514147 3219 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 78.703 78.752 2 0.0025051 27757 20211116_3446_TMUAki_TMT10x_S_F7 71.879 42.792 9680900 15072000 177060 15236000 9836200 11396000 11397000 6816500 6276800 7970100 11154000 9015200 14064000 969800 15475000 9481300 11744000 11320000 7196200 6782600 7736500 10609000 2 2 2 2 2 2 2 2 2 2 2 4898500 7128600 164550 7402400 4162100 7128200 5386200 3223100 2981500 4244400 5282000 4562200 6652800 549170 7528300 4031600 7190900 5325000 3504700 3220000 4103200 5024100 1 1 1 1 1 1 1 1 1 1 1 4782400 7943300 12504 7833900 5674000 4268300 6010400 3593400 3295200 3725700 5872400 4452900 7411500 420630 7946300 5449800 4553000 5995000 3691500 3562600 3633300 5585100 1 1 1 1 1 1 1 1 1 1 1 789100000 312150000 476950000 14158 3219 12960 74402;74403 89818 89818 1 NDVNVEFSEK Unmodified 1179.5408 0.54078198 3256 Q9Y2Z0;Q9Y2Z0-2 SUGT1 Suppressor of G2 allele of SKP1 homolog yes no 0 0 0 0 By MS/MS By MS/MS 3 0.577 1 4 1 3 3 44.935 44.818 2;3 2.0827E-25 15026 20211116_3441_TMUAki_TMT10x_S_F3 267.76 201.41 9017700 13542000 12186 14350000 11793000 11187000 9608500 6738100 7035500 7094200 10969000 8396100 12639000 751600 14535000 11250000 11491000 9780900 7086000 7409600 6913900 10460000 5 5 2 5 5 5 5 5 5 5 5 5267200 7667800 8302.6 8357000 7968000 8165300 5293000 4022100 4247800 4202000 6341500 4904300 7157500 477540 8473900 7573000 8237000 5476500 4303900 4441400 4096500 6052600 3 3 1 3 3 3 3 3 3 3 3 3750500 5874100 3883.7 5993200 3824600 3021400 4315500 2716100 2787700 2892200 4627400 3491800 5481600 274060 6061200 3677100 3254400 4304400 2782200 2968200 2817400 4406900 2 2 1 2 2 2 2 2 2 2 2 697510000 324460000 373060000 14159 3256 12961 74404;74405;74406;74407;74408;74409 89819;89820;89821;89822;89823 89822 5 NEAIQAAHDAVAQEGQCR Unmodified 1966.8915 0.89153554 588 P09936 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.66 1.33 2 6 4 17 3 2 1 12 23 38.872 38.875 2;3;4 4.783E-91 11300 20211116_3429_TMUAki_TMT10x_P_F2 305.14 267.79 32888000 54124000 244410 65063000 60208000 52847000 38529000 54665000 56812000 43982000 52507000 30621000 50544000 2004600 65420000 57175000 54632000 40780000 55168000 56843000 43395000 50785000 41 41 20 41 41 41 40 41 41 41 41 14230000 22894000 201110 26191000 43371000 38905000 22918000 22286000 22143000 19656000 22274000 13249000 21375000 1445000 26676000 41063000 38476000 24292000 23419000 22565000 19305000 21483000 14 14 9 14 14 14 14 14 14 14 14 18658000 31230000 43303 38872000 16836000 13942000 15611000 32379000 34669000 24326000 30233000 17372000 29169000 559500 38743000 16112000 16156000 16488000 31749000 34278000 24090000 29302000 27 27 11 27 27 27 26 27 27 27 27 49470000000 31825000000 17645000000 14160 588 12962 74410;74411;74412;74413;74414;74415;74416;74417;74418;74419;74420;74421;74422;74423;74424;74425;74426;74427;74428;74429;74430;74431;74432;74433;74434;74435;74436;74437;74438;74439;74440;74441;74442;74443;74444 89824;89825;89826;89827;89828;89829;89830;89831;89832;89833;89834;89835;89836;89837;89838;89839;89840;89841;89842;89843;89844;89845;89846;89847;89848;89849;89850;89851;89852;89853;89854;89855;89856;89857;89858;89859;89860;89861;89862;89863;89864;89865;89866;89867;89868;89869;89870;89871;89872 89828 49 NEAIQAAHDAVAQEGQCRVDDK Unmodified 2424.1088 0.10879854 588 P09936 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.8 0.748 2 2 1 3 2 42.461 42.571 4 2.2277E-26 11447 20211116_3442_TMUAki_TMT10x_S_F4 163.18 131 36401000 57052000 292810 77778000 80058000 63619000 41518000 31459000 41925000 31312000 49448000 33893000 53313000 3704200 77671000 75799000 64961000 44141000 33604000 42900000 30587000 47468000 12 12 6 12 12 12 12 12 12 12 12 31745000 49499000 252210 67641000 76520000 61445000 39056000 26948000 36681000 27167000 43105000 29559000 46255000 3317200 67631000 72433000 62203000 41501000 29147000 37648000 26523000 41383000 8 8 3 8 8 8 8 8 8 8 8 4655300 7553400 40604 10137000 3537800 2173300 2462000 4510800 5243800 4145600 6342900 4334600 7057800 386990 10040000 3366300 2757800 2639700 4457400 5252000 4063800 6084700 4 4 3 4 4 4 4 4 4 4 4 4738300000 3774800000 963540000 14161 588 12963 74445;74446;74447;74448;74449 89873;89874;89875;89876;89877;89878;89879;89880;89881;89882;89883;89884 89883 12 NECVVVIR Unmodified 987.51715 0.51715019 504 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 37.581 37.324 2 0.0081879 8736 20211116_3442_TMUAki_TMT10x_S_F4 83.623 53.053 1879000 3006500 18924 3168300 1722500 1687200 1995800 1948500 1913400 1876200 2680900 1749700 2806000 171230 3198700 1659600 1816000 2007500 1965700 1977400 1835400 2562400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1879000 3006500 18924 3168300 1722500 1687200 1995800 1948500 1913400 1876200 2680900 1749700 2806000 171230 3198700 1659600 1816000 2007500 1965700 1977400 1835400 2562400 2 2 2 2 2 2 2 2 2 2 2 38584000 0 38584000 14162 504 12964 74450;74451 89885;89886;89887 89887 3 NEDEEEEEEEKDEAEDLLGR Unmodified 2405.983 0.98303171 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 59.894 59.748 3 1.1278E-80 19998 20211116_3439_TMUAki_TMT10x_S_F1 308.76 281.48 24625000 43073000 0 43934000 25241000 35740000 29006000 25801000 25815000 26000000 33768000 22926000 40195000 1752100 44637000 24277000 36692000 29126000 26740000 26684000 25384000 32328000 3 3 0 3 3 3 3 3 3 3 3 12872000 22550000 0 23548000 16151000 25088000 18073000 13798000 13957000 13619000 17613000 11983000 21045000 923870 23976000 15523000 25209000 18105000 14594000 14509000 13309000 16878000 1 1 0 1 1 1 1 1 1 1 1 11753000 20523000 0 20386000 9089400 10652000 10932000 12003000 11858000 12380000 16155000 10943000 19150000 828190 20661000 8754600 11482000 11021000 12147000 12176000 12076000 15451000 2 2 0 2 2 2 2 2 2 2 2 4872100000 2651100000 2221000000 14163 3317 12965 74452;74453 89888;89889;89890 89889 3 NEDFAAHPGEDAVPTGPDCQAK Unmodified 2324.9968 0.99678848 1501 Q02952;Q02952-3;Q02952-2 AKAP12 A-kinase anchor protein 12 yes no 0 0 0 0 By MS/MS By matching 2.33 0.471 2 1 2 1 42.208 41.915 3;4 7.3212E-11 12340 20211116_3429_TMUAki_TMT10x_P_F2 115.66 110.55 1292800 1732800 0 2863500 3756400 3249900 1636100 1446900 1931100 1393600 1788900 1203600 1621100 126080 2847200 3547500 3246400 1779600 1560500 1946700 1363200 1730100 2 2 0 2 2 2 2 2 2 2 2 1292800 1732800 0 2863500 3756400 3249900 1636100 1446900 1931100 1393600 1788900 1203600 1621100 126080 2847200 3547500 3246400 1779600 1560500 1946700 1363200 1730100 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 171650000 136750000 34895000 14164 1501 12966 74454;74455;74456 89891;89892 89891 2 NEDLLEVGSRPGPASQLPR Unmodified 2034.0494 0.049416394 2528 Q96P11;Q96P11-2;Q96P11-4;Q96P11-5;Q96P11-3 NSUN5 Probable 28S rRNA (cytosine-C(5))-methyltransferase yes no 0 0 0 1 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 48.83 48.991 3 2.5361E-31 13938 20211116_3431_TMUAki_TMT10x_P_F4 182.77 134.24 6178700 10245000 46072 11367000 10614000 13444000 8174700 9184700 9483100 8563700 9114000 5752900 9564000 563820 11548000 10116000 13472000 8460000 9534700 9577100 8389300 8803400 4 4 2 4 4 4 4 4 4 4 4 4709900 7824200 46072 8610900 9398200 12380000 7122000 7135500 7192800 6773100 7162300 4385600 7303700 480120 8785300 8955800 12262000 7345300 7508700 7313300 6629900 6910200 3 3 2 3 3 3 3 3 3 3 3 1468700 2421000 0 2755900 1216200 1064200 1052700 2049100 2290300 1790600 1951700 1367300 2260300 83699 2762500 1159800 1210700 1114600 2026000 2263900 1759400 1893300 1 1 0 1 1 1 1 1 1 1 1 1314600000 947220000 367370000 14165 2528 12967 74457;74458;74459 89893;89894;89895;89896 89893 4 NEEDAAELVALAQAVNAR Unmodified 1882.9385 0.93846896 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.71 1.03 3 9 11 3 2 14 14 62.573 62.515 2;3 1.3344E-117 28410 20211116_3441_TMUAki_TMT10x_S_F3 371.18 326.04 73555000 128730000 266560 107610000 85618000 112520000 94142000 79920000 76413000 85819000 95869000 68481000 120040000 4724200 111340000 82263000 113600000 94498000 83079000 79204000 83572000 91879000 28 28 13 28 28 28 28 28 28 28 28 32431000 54464000 36951 45119000 30037000 61110000 38753000 34809000 34736000 37300000 41686000 30193000 50786000 1423300 46928000 28995000 60677000 38728000 36793000 35760000 36326000 39998000 12 12 4 12 12 12 12 12 12 12 12 41124000 74267000 229610 62488000 55581000 51415000 55389000 45111000 41677000 48519000 54183000 38288000 69255000 3300900 64415000 53269000 52919000 55769000 46286000 43443000 47246000 51881000 16 16 9 16 16 16 16 16 16 16 16 22859000000 12361000000 10497000000 14166 769 12968 74460;74461;74462;74463;74464;74465;74466;74467;74468;74469;74470;74471;74472;74473;74474;74475;74476;74477;74478;74479;74480;74481;74482;74483;74484;74485;74486;74487 89897;89898;89899;89900;89901;89902;89903;89904;89905;89906;89907;89908;89909;89910;89911;89912;89913;89914;89915;89916;89917;89918;89919;89920;89921;89922;89923;89924;89925;89926 89921 30 NEGCQVYGFLEVNK Unmodified 1655.7614 0.76135622 3230 Q9Y282;Q9Y282-3;Q9Y282-2 ERGIC3 Endoplasmic reticulum-Golgi intermediate compartment protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 65.06 65.186 3 0.085724 20796 20211116_3433_TMUAki_TMT10x_P_F5 29.804 10.729 2660900 4453200 82897 4554000 3383300 5671700 3299000 3235300 2875000 3150600 3292600 2478100 4155700 307980 4655400 3246900 5654200 3337600 3409800 2958200 3080500 3163300 1 1 1 1 1 1 1 1 1 1 1 2660900 4453200 82897 4554000 3383300 5671700 3299000 3235300 2875000 3150600 3292600 2478100 4155700 307980 4655400 3246900 5654200 3337600 3409800 2958200 3080500 3163300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 451210000 451210000 0 14167 3230 12969 74488;74489 89927;89928 89927 2 NEGNIFPNPEATFVK Unmodified 1675.8206 0.82058566 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 0 0 By MS/MS By MS/MS 5.25 0.924 3 4 4 1 7 5 67.599 67.671 2;3 3.5257E-30 21049 20211116_3445_TMUAki_TMT10x_S_F6 215.02 191.17 85432000 149160000 528420 135360000 107200000 139380000 108370000 114030000 100960000 105330000 122980000 79548000 139130000 7565600 139120000 102830000 141170000 109630000 116960000 103810000 103230000 117960000 18 18 9 18 18 18 18 18 18 18 18 46625000 79370000 171330 73113000 56542000 97757000 63236000 60196000 53966000 56074000 64982000 43413000 74038000 3975200 75397000 54382000 97225000 63506000 62975000 55698000 54935000 62345000 10 10 5 10 10 10 10 10 10 10 10 38807000 69787000 357100 62247000 50655000 41622000 45134000 53833000 46989000 49257000 58002000 36135000 65091000 3590400 63726000 48445000 43949000 46127000 53980000 48113000 48296000 55611000 8 8 4 8 8 8 8 8 8 8 8 11321000000 6214800000 5106600000 14168 3317 12970 74490;74491;74492;74493;74494;74495;74496;74497;74498;74499;74500;74501 89929;89930;89931;89932;89933;89934;89935;89936;89937;89938;89939;89940;89941;89942;89943;89944;89945;89946;89947;89948 89947 20 NEGVATYAAAVLFR Unmodified 1480.7674 0.76742787 923 P35222 CTNNB1 Catenin beta-1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 1 1 1 1 75.422 75.436 2 8.1443E-33 24496 20211116_3436_TMUAki_TMT10x_P_F8 222.79 190.47 6044500 11138000 96274 8655000 6471700 15927000 8321200 11296000 10253000 9749000 10292000 5628700 10384000 596830 9113600 6257700 15673000 8403600 11672000 10347000 9585100 9926900 2 2 2 2 2 2 2 2 2 2 2 6044500 11138000 96274 8655000 6471700 15927000 8321200 11296000 10253000 9749000 10292000 5628700 10384000 596830 9113600 6257700 15673000 8403600 11672000 10347000 9585100 9926900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 686680000 686680000 0 14169 923 12971 74502;74503 89949;89950;89951 89949 3 NEHRPASALVNPLAR Unmodified 1643.8856 0.88558595 155 O15027;O15027-5;O15027-2;O15027-4;O15027-3 SEC16A Protein transport protein Sec16A yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 33.057 33.063 4 0.030071 9149 20211116_3439_TMUAki_TMT10x_S_F1 44.37 30.707 1482600 2526900 1004.3 2370900 2436300 2353900 1932100 1555300 1799000 1590800 2069200 1380400 2357300 131360 2429500 2323000 2381100 1982100 1622600 1845500 1552200 1987700 2 2 1 2 2 2 2 2 2 2 2 770770 1283300 0 1214900 1483600 1550700 997660 821050 984880 840140 1061400 717620 1197200 68036 1249200 1409900 1542600 1037000 872180 1005200 819740 1021500 1 1 0 1 1 1 1 1 1 1 1 711830 1243600 1004.3 1156100 952690 803200 934460 734210 814080 750690 1007800 662790 1160100 63325 1180300 913090 838460 945090 750470 840330 732490 966160 1 1 1 1 1 1 1 1 1 1 1 74054000 38875000 35179000 14170 155 12972 74504;74505 89952 89952 1 NEHVDYVDVGGAYVGPTQNR Unmodified 2189.0138 0.013759169 757 P21397 MAOA Amine oxidase [flavin-containing] A yes yes 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 2 3 44.546 44.549 3 1.2998E-41 12555 20211116_3442_TMUAki_TMT10x_S_F4 206.11 184.2 2973000 4665300 34184 5872200 5247100 5058500 3417800 4484800 4779700 3762600 4422900 2768300 4357700 256390 5893200 4986700 5190500 3604600 4567200 4790300 3704500 4277700 6 6 3 6 6 6 6 6 6 6 6 1596200 2227800 33966 2956100 4057800 3980400 2357100 2368700 2530400 1880300 2269900 1486400 2081500 147900 2979600 3849800 3955600 2485200 2475100 2557400 1856500 2197700 3 3 1 3 3 3 3 3 3 3 3 1376800 2437500 217.9 2916100 1189300 1078100 1060600 2116100 2249300 1882300 2153000 1281900 2276200 108490 2913600 1136900 1234900 1119400 2092100 2232900 1848000 2079900 3 3 2 3 3 3 3 3 3 3 3 1354600000 713480000 641160000 14171 757 12973 74506;74507;74508;74509;74510 89953;89954;89955;89956;89957;89958 89958 6 NEIEIEEDHCGR Unmodified 1499.6311 0.63107033 1492 Q02241 KIF23 Kinesin-like protein KIF23 yes yes 0 0 0 0 By MS/MS 1 0 1 1 31.751 31.782 3 2.7964E-06 8663 20211116_3439_TMUAki_TMT10x_S_F1 113.35 104.86 146000 223490 968.99 233820 135180 145630 153990 150130 165470 150800 208280 135940 208580 12856 236490 130150 153900 155570 152430 169360 147250 199590 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 146000 223490 968.99 233820 135180 145630 153990 150130 165470 150800 208280 135940 208580 12856 236490 130150 153900 155570 152430 169360 147250 199590 1 1 1 1 1 1 1 1 1 1 1 23482000 0 23482000 14172 1492 12974 74511 89959 89959 1 NEILTAILASLTAR Unmodified 1484.8562 0.85624288 2747 Q9C0B1;Q9C0B1-4;Q9C0B1-2 FTO Alpha-ketoglutarate-dependent dioxygenase FTO yes no 0 0 0 0 By MS/MS 6 0 1 1 82.92 82.914 3 0.017221 26932 20211116_3434_TMUAki_TMT10x_P_F6 48.216 17.344 379770 584720 0 557310 454090 723290 428460 407670 381630 384750 459970 353600 545500 31665 572970 434700 719510 434500 429730 393080 376710 441290 1 1 0 1 1 1 1 1 1 1 1 379770 584720 0 557310 454090 723290 428460 407670 381630 384750 459970 353600 545500 31665 572970 434700 719510 434500 429730 393080 376710 441290 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 52040000 52040000 0 14173 2747 12975 74512 89960 89960 1 NELEIPGQYDGR Unmodified 1389.6525 0.6524577 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 48.304 48.085 2 3.6485E-15 15152 20211116_3430_TMUAki_TMT10x_P_F3 190.36 140.32 3498000 5484300 12233 7357800 8257900 8297300 4741200 6190200 6810900 5136400 6011200 3256600 5124500 303650 7387900 7826200 8347500 5057200 6368600 6810000 5059900 5823600 3 3 1 3 3 3 3 3 3 3 3 2236800 3416000 12233 4828800 7399300 7410000 4003000 4058300 4540800 3407800 3922200 2082400 3192800 225480 4864900 7007300 7314200 4254700 4275900 4574000 3355100 3802800 2 2 1 2 2 2 2 2 2 2 2 1261200 2068300 0 2529000 858600 887380 738200 2131800 2270200 1728600 2089000 1174200 1931700 78164 2522900 818890 1033200 802510 2092600 2236100 1704800 2020800 1 1 0 1 1 1 1 1 1 1 1 647690000 483490000 164200000 14174 1433 12976 74513;74514;74515 89961;89962;89963 89961 3 NELESYAYSLK Unmodified 1315.6296 0.62959699 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 By MS/MS By MS/MS 4.64 0.881 1 4 4 2 6 5 62.691 62.678 2;3 3.6707E-23 18729 20211116_3444_TMUAki_TMT10x_S_F5 240.85 148.01 42309000 76927000 215300 81747000 70404000 90353000 60981000 64402000 65236000 63816000 65535000 39394000 71799000 3925800 83184000 67271000 90932000 62480000 66772000 66191000 62350000 63210000 10 10 7 10 10 10 10 10 10 10 10 26831000 48592000 110960 51475000 56241000 76621000 47205000 41562000 42147000 40990000 41237000 24982000 45352000 2635300 52685000 53699000 75717000 48198000 44009000 43066000 40057000 39808000 6 6 4 6 6 6 6 6 6 6 6 15478000 28335000 104340 30273000 14163000 13732000 13776000 22840000 23089000 22826000 24298000 14411000 26447000 1290400 30499000 13572000 15214000 14282000 22762000 23125000 22294000 23402000 4 4 3 4 4 4 4 4 4 4 4 4972000000 3248100000 1723900000 14175 614 12977 74516;74517;74518;74519;74520;74521;74522;74523;74524;74525;74526 89964;89965;89966;89967;89968;89969;89970;89971;89972;89973;89974;89975;89976 89974 13 NELFLPGR Unmodified 944.50797 0.50796571 1595 Q13123 IK Protein Red yes yes 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 49.484 49.629 2 0.031198 14511 20211116_3433_TMUAki_TMT10x_P_F5 66.27 28.032 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14176 1595 12978 74527;74528 89977;89978 89977 2 NELHKFK Unmodified 914.4974 0.49740102 2965 Q9NVA2;Q9NVA2-2 SEPT11 Septin-11 yes no 0 0 0 1 By MS/MS 2 0 1 1 29.782 29.552 3 0.074344 7378 20211116_3429_TMUAki_TMT10x_P_F2 45.312 14.742 393630 628700 3179.1 601500 625650 584380 436420 242090 290410 290570 451450 366530 586540 38847 615290 595330 588690 448050 264870 307550 281780 430510 1 1 1 1 1 1 1 1 1 1 1 393630 628700 3179.1 601500 625650 584380 436420 242090 290410 290570 451450 366530 586540 38847 615290 595330 588690 448050 264870 307550 281780 430510 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14004000 14004000 0 14177 2965 12979 74529 89979 89979 1 NELMYQLEQDHDLQAILQER Oxidation (M) 2501.1857 0.18565188 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 1 0 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 70.117 69.967 3 1.9189E-24 23893 20211116_3429_TMUAki_TMT10x_P_F2 163.78 154.96 10454000 19405000 14241 20168000 12784000 22523000 13732000 14912000 16506000 17682000 16076000 9733700 18110000 650320 20556000 12279000 22628000 13965000 15629000 16655000 17155000 15521000 5 5 1 5 5 5 5 5 5 5 5 6738600 12865000 14241 14030000 8001800 16992000 8817700 10202000 11383000 12368000 10761000 6274300 12008000 367530 14275000 7692600 16975000 8980900 10780000 11446000 11990000 10400000 3 3 1 3 3 3 3 3 3 3 3 3715800 6540400 0 6137300 4782500 5530500 4914300 4709800 5122900 5314700 5315000 3459400 6101300 282790 6280500 4586300 5653100 4984300 4848100 5209400 5165700 5121200 2 2 0 2 2 2 2 2 2 2 2 2642500000 1882600000 760000000 14178 1546 12980 74530;74531;74532 89980;89981;89982;89983;89984 89982 2082 5 NELMYQLEQDHDLQAILQER Unmodified 2485.1907 0.19073726 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 By MS/MS 1 0 1 1 77.222 77.169 3 3.6656E-18 27090 20211116_3439_TMUAki_TMT10x_S_F1 143.93 134.88 3621600 6089000 129930 5691800 4170600 3971200 4592000 2711600 2750400 3213300 4406600 3373100 5680200 429040 5808900 4017500 4123400 4578900 2835600 2937400 3117600 4199600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3621600 6089000 129930 5691800 4170600 3971200 4592000 2711600 2750400 3213300 4406600 3373100 5680200 429040 5808900 4017500 4123400 4578900 2835600 2937400 3117600 4199600 1 1 1 1 1 1 1 1 1 1 1 748640000 0 748640000 14179 1546 12980 74533 89985 89985 1 NELSGALTGLTR Unmodified 1230.6568 0.65681479 819 P26639;P26639-2 TARS Threonine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 54.591 54.817 2 7.5503E-15 15753 20211116_3445_TMUAki_TMT10x_S_F6 179.95 146.83 29741000 57178000 182020 55727000 42938000 50941000 33782000 49339000 45594000 43138000 47698000 27691000 53347000 2658100 56882000 40941000 52154000 35111000 50060000 45942000 42386000 45947000 5 5 1 5 5 5 5 5 5 5 5 11269000 22948000 0 21748000 24322000 34314000 19340000 18705000 18264000 17171000 18942000 10491000 21408000 985410 22460000 23187000 33831000 19845000 19760000 18652000 16833000 18252000 2 2 0 2 2 2 2 2 2 2 2 18472000 34230000 182020 33979000 18616000 16627000 14442000 30634000 27330000 25967000 28755000 17200000 31939000 1672700 34422000 17754000 18323000 15267000 30300000 27290000 25553000 27695000 3 3 1 3 3 3 3 3 3 3 3 3234600000 1952500000 1282100000 14180 819 12981 74534;74535;74536;74537;74538;74539 89986;89987;89988;89989;89990;89991;89992 89991 7 NENEEILERPAQLANAR Unmodified 1965.9868 0.98681614 3115 Q9UHB6;Q9UHB6-4;Q9UHB6-3;Q9UHB6-2;Q9UHB6-5 LIMA1 LIM domain and actin-binding protein 1 yes no 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 43.181 43.027 3 2.7818E-47 11397 20211116_3440_TMUAki_TMT10x_S_F2 247.4 211.88 2120900 3931100 12920 4325100 1608600 1866500 1448900 3249300 3377700 2864200 3289400 1974800 3669600 173960 4347700 1538700 2084200 1537700 3222400 3348700 2813200 3175900 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2120900 3931100 12920 4325100 1608600 1866500 1448900 3249300 3377700 2864200 3289400 1974800 3669600 173960 4347700 1538700 2084200 1537700 3222400 3348700 2813200 3175900 3 3 2 3 3 3 3 3 3 3 3 195030000 0 195030000 14181 3115 12982 74540;74541 89993;89994;89995 89993 3 NENGAPEDEENFEEAIK Unmodified 1933.8177 0.8177447 1648 Q13564;Q13564-3;Q13564-2;Q13564-4 NAE1 NEDD8-activating enzyme E1 regulatory subunit yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 53.595 53.45 3 1.8855E-15 17479 20211116_3439_TMUAki_TMT10x_S_F1 145.79 135.16 4515900 8215700 47992 8309200 6467800 7678100 4884200 7512500 6849400 6482400 7816500 4205100 7666500 446460 8460700 6164700 7857200 5097900 7615800 6916400 6373500 7510400 3 3 3 3 3 3 3 3 3 3 3 1899200 3306600 16075 3305600 3602400 4804200 2873000 2713100 2682800 2505100 3134200 1768400 3085400 196290 3394700 3436800 4754800 2946400 2857800 2753600 2455100 3009500 1 1 1 1 1 1 1 1 1 1 1 2616700 4909100 31917 5003600 2865400 2873900 2011200 4799500 4166700 3977300 4682300 2436700 4581100 250170 5066000 2727900 3102400 2151400 4758000 4162900 3918300 4500900 2 2 2 2 2 2 2 2 2 2 2 322980000 197080000 125890000 14182 1648 12983 74542;74543 89996;89997;89998 89997 3 NENLAANFLLQQNFDED Unmodified 1993.9017 0.9017491 1227 P54727;P54727-2 RAD23B UV excision repair protein RAD23 homolog B yes no 0 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 4 2 80.119 80.087 2;3 0.00024098 28327 20211116_3439_TMUAki_TMT10x_S_F1 72.634 61.194 5977900 9928400 2109.6 8475100 5832700 8295600 6949700 5439300 5514300 5551200 6935700 5565500 9258900 301490 8746000 5616500 8397900 6946600 5677800 5723100 5416900 6646600 5 5 1 5 5 5 5 5 5 5 5 3577200 5255500 0 4739200 2710000 5634200 3630000 2785300 3088100 3153700 4018600 3330300 4902000 103710 4884600 2618100 5620500 3617200 2986700 3198400 3064900 3847800 3 3 0 3 3 3 3 3 3 3 3 2400700 4672900 2109.6 3735900 3122600 2661400 3319800 2654000 2426200 2397400 2917100 2235200 4356800 197770 3861400 2998400 2777400 3329400 2691100 2524800 2352000 2798800 2 2 1 2 2 2 2 2 2 2 2 2517600000 1698200000 819360000 14183 1227 12984 74544;74545;74546;74547;74548;74549 89999;90000;90001;90002;90003 90002 5 NENQLIIFADDTYPR Unmodified 1807.8741 0.87407779 1798 Q15393;Q15393-3 SF3B3 Splicing factor 3B subunit 3 yes no 0 0 0 0 By MS/MS By matching 2 0.816 1 1 1 2 1 70.205 69.972 2;3 3.5139E-33 23748 20211116_3429_TMUAki_TMT10x_P_F2 222.74 190.9 3427400 5609200 12706 5126200 3338200 6031900 4250900 3556700 3390800 3595000 4423900 3191300 5232200 286540 5277300 3224000 6033400 4237500 3742300 3523900 3509500 4235600 2 2 1 2 2 2 2 2 2 2 2 3427400 5609200 12706 5126200 3338200 6031900 4250900 3556700 3390800 3595000 4423900 3191300 5232200 286540 5277300 3224000 6033400 4237500 3742300 3523900 3509500 4235600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1234000000 1009000000 224980000 14184 1798 12985 74550;74551;74552 90004;90005 90005 2 NENRDISEVIALGVPNPR Unmodified 1992.0389 0.038851707 1649 Q13573 SNW1 SNW domain-containing protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 58.582 58.728 3 2.357E-12 18171 20211116_3433_TMUAki_TMT10x_P_F5 135.81 122.68 17473000 26846000 89436 25515000 18845000 27227000 19147000 18428000 16381000 16928000 22349000 16270000 25045000 1501100 26149000 18079000 27434000 19320000 19136000 16998000 16594000 21375000 4 4 2 4 4 4 4 4 4 4 4 13944000 20685000 5654 20160000 14610000 23976000 15435000 14232000 13124000 13227000 17710000 12983000 19299000 1120500 20661000 14026000 23971000 15542000 14932000 13615000 12959000 16943000 3 3 1 3 3 3 3 3 3 3 3 3529000 6160500 83782 5355400 4235700 3250900 3711600 4196500 3256900 3700900 4638700 3286400 5745400 380560 5488800 4053300 3462800 3778200 4204100 3382300 3634900 4432000 1 1 1 1 1 1 1 1 1 1 1 2158300000 1339700000 818610000 14185 1649 12986 74553;74554;74555 90006;90007;90008;90009 90007 4 NENTFLDLTVQQIEHLNK Unmodified 2155.0909 0.090946857 1868 Q16851;Q16851-2 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 4.5 1.12 1 1 1 1 1 3 78.084 78.087 3 4.5254E-05 25934 20211116_3431_TMUAki_TMT10x_P_F4 79.676 62.394 14876000 24866000 111580 22259000 18502000 23920000 19784000 15749000 15010000 17231000 18846000 13851000 23193000 1388100 22917000 17780000 24082000 19853000 16469000 15615000 16767000 18061000 3 3 3 3 3 3 3 3 3 3 3 5058100 8845300 24095 8097000 5441500 11230000 6750600 5786200 6069700 6125600 6883100 4709800 8250800 447180 8360000 5251900 11124000 6757900 6167900 6233600 5968600 6614700 1 1 1 1 1 1 1 1 1 1 1 9817400 16021000 87480 14162000 13060000 12690000 13033000 9962700 8940000 11105000 11963000 9141600 14942000 940880 14557000 12528000 12958000 13095000 10301000 9381200 10799000 11447000 2 2 2 2 2 2 2 2 2 2 2 3396300000 991790000 2404500000 14186 1868 12987 74556;74557;74558;74559 90010;90011;90012;90013 90010 4 NEQDAYAINSYTR Unmodified 1543.6903 0.69029976 795 P24752 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes yes 0 0 0 0 By MS/MS 3 0 2 2 38.14 38.168 2;3 1.3666E-43 11056 20211116_3430_TMUAki_TMT10x_P_F3 277.06 246.81 261030 430600 1549 529660 971550 723220 390370 389100 493730 305890 437340 243030 402170 28873 536240 916780 717320 429560 409980 495760 302180 423630 4 4 2 4 4 4 4 4 4 4 4 261030 430600 1549 529660 971550 723220 390370 389100 493730 305890 437340 243030 402170 28873 536240 916780 717320 429560 409980 495760 302180 423630 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31895000 31895000 0 14187 795 12988 74560;74561 90014;90015;90016;90017 90014 4 NERLELEAYR Unmodified 1291.6521 0.65206377 3016 Q9NYB0 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.25 0.433 3 1 1 3 35.663 35.531 3 0.00060618 11557 20211116_3441_TMUAki_TMT10x_S_F3 94.191 72.685 2005500 3465000 13006 3208200 2874400 2583400 2444000 2455500 2826700 2290200 2994900 1867400 3232300 184910 3281700 2745700 2667500 2513400 2498100 2864900 2243600 2883900 4 4 2 4 4 4 4 4 4 4 4 542100 929010 0 859360 1185400 1252200 736070 757330 940120 728830 855250 504710 866600 48825 887480 1124900 1240300 776440 794120 944470 712990 827660 1 1 0 1 1 1 1 1 1 1 1 1463400 2536000 13006 2348800 1689100 1331300 1707900 1698200 1886500 1561400 2139700 1362700 2365700 136090 2394200 1620800 1427200 1737000 1704000 1920400 1530600 2056200 3 3 2 3 3 3 3 3 3 3 3 95677000 39682000 55995000 14188 3016 12989 74562;74563;74564;74565 90018;90019;90020;90021;90022 90022 5 NETLGGTCLNVGCIPSK Unmodified 1818.8604 0.86041834 582 P09622;P09622-3 DLD Dihydrolipoyl dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 58.437 58.475 3 1.5826E-05 17320 20211116_3445_TMUAki_TMT10x_S_F6 88.565 69.969 2304000 4255200 5382.1 4779400 2123300 2103700 1804200 2815600 2308100 2498300 3181100 2145300 3972500 193500 4798800 2028200 2324100 1862400 2817300 2357000 2453000 3041600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2304000 4255200 5382.1 4779400 2123300 2103700 1804200 2815600 2308100 2498300 3181100 2145300 3972500 193500 4798800 2028200 2324100 1862400 2817300 2357000 2453000 3041600 1 1 1 1 1 1 1 1 1 1 1 744160000 0 744160000 14189 582 12990 74566;74567 90023;90024 90023 2 NETYNSHPLLVK Unmodified 1413.7252 0.72522871 2258 Q8NI27 THOC2 THO complex subunit 2 yes yes 0 0 0 0 By MS/MS 6 0 1 1 39.015 39.021 3 0.00011332 9071 20211116_3434_TMUAki_TMT10x_P_F6 85.845 62.609 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14190 2258 12991 74568 90025 90025 1 NEVSFVIHNLPVLAK Unmodified 1678.9406 0.94064121 1127 P49903;P49903-4;P49903-3 SEPHS1 Selenide, water dikinase 1 yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 75.751 75.692 3 5.7854E-10 26002 20211116_3429_TMUAki_TMT10x_P_F2 133.66 114.91 15225000 26475000 126380 23998000 17646000 27031000 19650000 17684000 16467000 18133000 20647000 14176000 24694000 1360500 24702000 16974000 27140000 19729000 18465000 17040000 17691000 19788000 6 6 5 6 6 6 6 6 6 6 6 9902600 16099000 45585 14728000 10472000 20547000 12321000 11315000 10418000 11264000 12993000 9220200 15017000 817990 15209000 10087000 20365000 12342000 11969000 10773000 11003000 12455000 4 4 3 4 4 4 4 4 4 4 4 5322300 10376000 80790 9269700 7174000 6484100 7329500 6368900 6049500 6869500 7653400 4956200 9677400 542480 9493100 6887600 6774800 7386900 6496300 6267300 6688500 7333300 2 2 2 2 2 2 2 2 2 2 2 2887300000 1274100000 1613100000 14191 1127 12992 74569;74570;74571;74572 90026;90027;90028;90029;90030;90031 90029 6 NEVVVELRK Unmodified 1084.6241 0.6240581 106 O00629 KPNA4 Importin subunit alpha-3 yes yes 0 0 0 1 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 39.732 39.829 3 0.000542 9533 20211116_3444_TMUAki_TMT10x_S_F5 107.03 64.631 2944300 4880400 4679 4807400 4302400 3982500 3393900 3521200 3340500 3112400 4152400 2741300 4553600 243420 4897200 4101200 4097600 3488500 3591100 3429500 3056600 3980500 3 3 1 3 3 3 3 3 3 3 3 1361600 2248300 0 2235800 2246800 2454600 1556300 1615700 1599300 1415500 1920000 1267600 2097900 103260 2285000 2135600 2468300 1616000 1679100 1636500 1390700 1842200 1 1 0 1 1 1 1 1 1 1 1 1582700 2632000 4679 2571600 2055600 1527900 1837600 1905500 1741200 1696900 2232400 1473700 2455700 140150 2612100 1965600 1629400 1872400 1912100 1793000 1665900 2138300 2 2 1 2 2 2 2 2 2 2 2 288790000 204750000 84043000 14192 106 12993 74573;74574;74575;74576;74577 90032;90033;90034;90035 90034 4 NFAELAR Unmodified 819.4239 0.42390173 3273 Q9Y3C6 PPIL1 Peptidyl-prolyl cis-trans isomerase-like 1 yes yes 0 0 0 0 By MS/MS 4 0 2 2 40.288 40.486 2 0.011127 10960 20211116_3442_TMUAki_TMT10x_S_F4 95.909 36.269 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14193 3273 12994 74578;74579 90036;90037 90036 2 NFAEPGSEVYLR Unmodified 1380.6674 0.66737948 933 P35573;P35573-2;P35573-3 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes no 0 0 0 0 By MS/MS By matching 3.33 0.471 2 1 2 1 51.629 51.382 2 5.3945E-15 14958 20211116_3431_TMUAki_TMT10x_P_F4 160.67 130.91 1597800 2641800 11824 3090200 3558200 3810800 2068100 1966100 2067900 1874200 2360500 1487800 2466700 170950 3131600 3375000 3796300 2175600 2089300 2114100 1834200 2268100 1 1 1 1 1 1 1 1 1 1 1 1597800 2641800 11824 3090200 3558200 3810800 2068100 1966100 2067900 1874200 2360500 1487800 2466700 170950 3131600 3375000 3796300 2175600 2089300 2114100 1834200 2268100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 158770000 125080000 33692000 14194 933 12995 74580;74581;74582 90038;90039 90039 2 NFAEPGSEVYLRR Unmodified 1536.7685 0.76849051 933 P35573;P35573-2;P35573-3 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes no 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 41.337 41.502 3 0.0024192 10367 20211116_3445_TMUAki_TMT10x_S_F6 67.927 45.048 3308300 4510900 22818 8688700 2115400 1779500 2908600 2510100 3034800 2305500 4415400 3080300 4224700 249560 8465500 2047700 2255500 2912800 2509100 3130900 2260100 4216600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3308300 4510900 22818 8688700 2115400 1779500 2908600 2510100 3034800 2305500 4415400 3080300 4224700 249560 8465500 2047700 2255500 2912800 2509100 3130900 2260100 4216600 2 2 1 2 2 2 2 2 2 2 2 172720000 0 172720000 14195 933 12996 74583;74584 90040;90041;90042 90041 3 NFAFLEFR Unmodified 1042.5236 0.52361577 812 P26368;P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 0 0 0 0 By MS/MS By MS/MS 4.33 3.09 2 1 1 2 3 3 72.187 72.138 2 2.8589E-05 22581 20211116_3447_TMUAki_TMT10x_S_F8 178.99 143.89 25299000 47770000 302500 37517000 35857000 47974000 33317000 39988000 36686000 37305000 40480000 23558000 44536000 2492200 39154000 34333000 48048000 34032000 40980000 37309000 36545000 38932000 4 4 2 4 4 4 4 4 4 4 4 13475000 23690000 0 18474000 16543000 31255000 16089000 20790000 17897000 18733000 19976000 12546000 22086000 1125100 19406000 15848000 30817000 16399000 21604000 18202000 18381000 19206000 2 2 0 2 2 2 2 2 2 2 2 11825000 24079000 302500 19043000 19314000 16719000 17228000 19198000 18788000 18572000 20503000 11012000 22450000 1367200 19748000 18485000 17231000 17633000 19376000 19107000 18164000 19726000 2 2 2 2 2 2 2 2 2 2 2 7182600000 4886700000 2295900000 14196 812 12997 74585;74586;74587;74588;74589;74590 90043;90044;90045;90046;90047;90048 90048 6 NFAQLTVSGSR Unmodified 1178.6044 0.60438529 928 P35249;P35249-2 RFC4 Replication factor C subunit 4 yes no 0 0 0 0 By MS/MS By MS/MS 4.2 3.12 1 2 2 3 2 44.832 44.75 2 2.622E-15 11984 20211116_3436_TMUAki_TMT10x_P_F8 179.2 136.17 4909500 8140900 52311 8854300 8047500 8187200 5575600 6817300 6880100 5946200 7372100 4571600 7599000 498190 8972500 7657200 8350900 5825200 6974400 6959700 5843300 7096400 4 4 3 4 4 4 4 4 4 4 4 2947700 4403200 39929 5027400 5844600 6303800 3647700 3690800 3837500 3355400 4147100 2744900 4111000 322170 5103700 5551300 6284500 3820800 3874400 3906700 3290900 3991000 2 2 2 2 2 2 2 2 2 2 2 1961800 3737700 12383 3826900 2202800 1883400 1927900 3126500 3042600 2590800 3225100 1826700 3488000 176020 3868700 2105900 2066500 2004400 3100000 3053000 2552400 3105400 2 2 1 2 2 2 2 2 2 2 2 609820000 408570000 201250000 14197 928 12998 74591;74592;74593;74594;74595 90049;90050;90051;90052;90053 90051 5 NFDEILR Unmodified 905.46068 0.46068117 859 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 0 0 By MS/MS By MS/MS 3.71 1.03 1 2 2 2 3 4 52.094 52.09 2 0.0012235 15626 20211116_3442_TMUAki_TMT10x_S_F4 142.36 94.016 39926000 62605000 76822 76262000 51830000 51289000 33932000 56351000 56054000 49588000 59084000 37173000 58468000 3246700 76461000 49232000 53904000 36039000 56836000 56164000 48709000 56903000 7 7 2 7 7 7 7 7 7 7 7 11791000 17199000 0 20020000 27265000 29111000 11600000 15157000 15121000 13460000 16485000 10978000 16059000 1136700 20360000 25745000 28782000 12694000 16064000 15277000 13216000 15860000 3 3 0 3 3 3 3 3 3 3 3 28135000 45406000 76822 56242000 24565000 22178000 22332000 41195000 40933000 36128000 42599000 26195000 42409000 2110000 56102000 23487000 25122000 23345000 40773000 40887000 35494000 41042000 4 4 2 4 4 4 4 4 4 4 4 5382600000 2783000000 2599600000 14198 859 12999 74596;74597;74598;74599;74600;74601;74602 90054;90055;90056;90057;90058;90059;90060 90059 7 NFDLRPGVIVR Unmodified 1284.7303 0.73025451 885 P31153;P31153-2;Q00266 MAT2A;MAT1A S-adenosylmethionine synthase isoform type-2;S-adenosylmethionine synthase isoform type-1 yes no 0 0 0 1 By MS/MS By MS/MS 3.57 2.87 2 2 1 2 3 4 48.418 48.314 3 6.5363E-15 13299 20211116_3428_TMUAki_TMT10x_P_F1 193.22 163.01 21070000 34300000 187720 37270000 32394000 36349000 24114000 29891000 29283000 26248000 30957000 19618000 32017000 1823900 37798000 30848000 36942000 25053000 30608000 29624000 25785000 29811000 9 9 4 9 9 9 9 9 9 9 9 11403000 18439000 133850 20394000 22604000 27651000 15443000 15961000 15237000 13973000 16922000 10617000 17213000 1123100 20776000 21495000 27459000 16033000 16758000 15570000 13729000 16272000 4 4 2 4 4 4 4 4 4 4 4 9667200 15861000 53869 16875000 9789800 8698600 8670800 13930000 14047000 12274000 14035000 9000300 14804000 700790 17022000 9352100 9483500 9020100 13850000 14054000 12056000 13540000 5 5 2 5 5 5 5 5 5 5 5 6466100000 3796700000 2669400000 14199 885 13000 74603;74604;74605;74606;74607;74608;74609 90061;90062;90063;90064;90065;90066;90067;90068;90069;90070 90061 10 NFDRENVR Unmodified 1048.505 0.5050056 295 O60841 EIF5B Eukaryotic translation initiation factor 5B yes yes 0 0 0 1 By matching By MS/MS 2.5 0.5 1 1 1 1 27.29 27.029 3 0.027506 7992 20211116_3441_TMUAki_TMT10x_S_F3 58.433 29.475 112370 183150 0 168230 133850 108280 103450 99612 104520 82764 131500 104610 170840 7343.2 171780 127430 113820 106560 101210 107240 81526 126020 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 112370 183150 0 168230 133850 108280 103450 99612 104520 82764 131500 104610 170840 7343.2 171780 127430 113820 106560 101210 107240 81526 126020 1 1 0 1 1 1 1 1 1 1 1 5279100 1430300 3848800 14200 295 13001 74610;74611 90071 90071 1 NFDVGHVPIR Unmodified 1152.604 0.60399136 1141 P50579;P50579-3;P50579-2 METAP2 Methionine aminopeptidase 2 yes no 0 0 0 0 By MS/MS 6 0 1 1 40.09 40.254 3 0.0029819 9893 20211116_3445_TMUAki_TMT10x_S_F6 71.153 44.711 454170 703130 0 812460 386700 386130 421310 436850 424150 401040 592830 422830 656500 31122 814750 371290 420800 425630 440530 437360 393150 566660 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 454170 703130 0 812460 386700 386130 421310 436850 424150 401040 592830 422830 656500 31122 814750 371290 420800 425630 440530 437360 393150 566660 1 1 0 1 1 1 1 1 1 1 1 33354000 0 33354000 14201 1141 13002 74612 90072 90072 1 NFDVGHVPIRLPR Unmodified 1518.8419 0.84193022 1141 P50579;P50579-3;P50579-2 METAP2 Methionine aminopeptidase 2 yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 49.15 48.961 4 2.087E-14 15118 20211116_3429_TMUAki_TMT10x_P_F2 161.25 143.59 2506300 3963500 0 4429500 3053800 2728400 2619900 2013900 1953300 2000500 2904900 2333400 3700100 188770 4460400 2915500 2868400 2659600 2083300 2050100 1954300 2772800 2 2 0 2 2 2 2 2 2 2 2 658410 1190800 0 1187300 1105700 1174600 645670 564000 554570 483710 823380 613020 1111100 58056 1211300 1048500 1183700 676170 601850 577700 475720 785970 1 1 0 1 1 1 1 1 1 1 1 1847900 2772700 0 3242200 1948100 1553800 1974300 1449900 1398800 1516800 2081500 1720400 2589000 130710 3249200 1867000 1684700 1983400 1481400 1472400 1478600 1986800 1 1 0 1 1 1 1 1 1 1 1 1026700000 587100000 439620000 14202 1141 13003 74613;74614 90073;90074 90073 2 NFEALNAR Unmodified 933.46683 0.46682918 1735 Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 36.991 37.139 2 0.01166 9477 20211116_3442_TMUAki_TMT10x_S_F4 80.787 45.538 237050 393580 3881.5 410300 269540 212940 256600 258130 290230 217830 353170 220750 367310 23726 414440 258360 230110 261990 258960 296020 214410 338740 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 237050 393580 3881.5 410300 269540 212940 256600 258130 290230 217830 353170 220750 367310 23726 414440 258360 230110 261990 258960 296020 214410 338740 1 1 1 1 1 1 1 1 1 1 1 19540000 0 19540000 14203 1735 13004 74615;74616 90075 90075 1 NFEATLGWLQEHACSR Unmodified 1917.8792 0.87917994 3064 Q9P2J5;Q9P2J5-2 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 2 3 69.645 69.755 3 1.5514E-30 23450 20211116_3435_TMUAki_TMT10x_P_F7 198.85 187.16 18559000 30429000 223580 28466000 21294000 26562000 23000000 17015000 15666000 16575000 21841000 17281000 28387000 1723100 29150000 20470000 26963000 23013000 17768000 16477000 16206000 20878000 7 7 6 7 7 7 7 7 7 7 7 11532000 17992000 160860 16833000 11649000 19085000 14120000 10066000 8954300 9262500 12879000 10738000 16784000 1045400 17288000 11237000 19101000 14033000 10665000 9474800 9079300 12302000 4 4 3 4 4 4 4 4 4 4 4 7027000 12438000 62716 11633000 9645200 7477000 8879500 6949100 6711700 7312800 8961700 6543300 11603000 677710 11862000 9232800 7861600 8979800 7102900 7002700 7127000 8575400 3 3 3 3 3 3 3 3 3 3 3 4848500000 2166000000 2682500000 14204 3064 13005 74617;74618;74619;74620;74621 90076;90077;90078;90079;90080;90081;90082 90077 7 NFEDVAFDEK Unmodified 1212.5299 0.52988294 533 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 By MS/MS By MS/MS 3.1 0.831 3 3 4 6 4 57.965 57.849 2;3 1.1646E-08 18862 20211116_3429_TMUAki_TMT10x_P_F2 133.07 77.52 21546000 36423000 76387 41162000 37629000 41252000 26119000 25865000 29088000 26030000 30580000 20061000 34005000 1907500 41659000 35784000 41673000 27187000 27080000 29515000 25416000 29453000 6 6 2 6 6 6 6 6 6 6 6 14229000 23499000 76387 26891000 31713000 35262000 20751000 16552000 18463000 17072000 20158000 13248000 21940000 1347300 27318000 30127000 34986000 21551000 17788000 18944000 16652000 19393000 4 4 2 4 4 4 4 4 4 4 4 7316600 12924000 0 14271000 5916300 5989200 5368200 9313900 10625000 8957600 10422000 6812200 12065000 560190 14340000 5657300 6687000 5636600 9291200 10572000 8763100 10060000 2 2 0 2 2 2 2 2 2 2 2 2238500000 1485700000 752800000 14205 533 13006 74622;74623;74624;74625;74626;74627;74628;74629;74630;74631 90083;90084;90085;90086;90087;90088;90089;90090;90091;90092 90084 10 NFEDVAFDEKK Unmodified 1340.6248 0.62484596 533 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 51.593 51.694 3 0.0019975 14514 20211116_3445_TMUAki_TMT10x_S_F6 68.277 38.296 3544700 5943700 5849 7015700 10177000 8978900 4943200 5370400 5742700 4275300 5545500 3300500 5550100 392210 7110800 9626600 8944900 5312500 5609600 5800300 4220600 5355600 1 1 1 1 1 1 1 1 1 1 1 3544700 5943700 5849 7015700 10177000 8978900 4943200 5370400 5742700 4275300 5545500 3300500 5550100 392210 7110800 9626600 8944900 5312500 5609600 5800300 4220600 5355600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 240390000 240390000 0 14206 533 13007 74632;74633 90093;90094 90094 2 NFESLSEAFSVASAAAVLSHNR Unmodified 2306.1291 0.12912328 495 P04844;P04844-2 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 78.623 78.598 3 1.5398E-55 25891 20211116_3440_TMUAki_TMT10x_S_F2 220.28 198.75 13174000 21745000 358940 20277000 15812000 21168000 16719000 17372000 14573000 16328000 17625000 12269000 20285000 1427900 20803000 15203000 21424000 16845000 17823000 15028000 15990000 16907000 5 5 2 5 5 5 5 5 5 5 5 4795500 7455400 0 6458600 4335800 10060000 5163800 6750600 5594600 5958300 6574600 4464900 6953000 366710 6713100 4176600 9952000 5207900 7006900 5707500 5851800 6311900 2 2 0 2 2 2 2 2 2 2 2 8378600 14290000 358940 13818000 11476000 11108000 11555000 10622000 8978700 10370000 11050000 7803900 13332000 1061200 14089000 11027000 11472000 11637000 10817000 9320600 10138000 10595000 3 3 2 3 3 3 3 3 3 3 3 5976500000 3072600000 2903900000 14207 495 13008 74634;74635;74636;74637 90095;90096;90097;90098;90099 90098 5 NFEWVAER Unmodified 1049.493 0.49304393 767 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 51.699 51.644 2 0.0024483 16681 20211116_3430_TMUAki_TMT10x_P_F3 109.44 83.375 29916000 48218000 262390 58744000 45383000 44789000 39854000 27101000 25673000 28488000 40532000 27855000 45032000 2701400 58977000 43377000 46091000 40276000 28488000 27266000 27766000 38640000 6 6 2 6 6 6 6 6 6 6 6 15926000 25515000 231800 31000000 35702000 34599000 27365000 14617000 14939000 15764000 22241000 14829000 23828000 1672200 31292000 34028000 34576000 27808000 15905000 16001000 15348000 21229000 3 3 1 3 3 3 3 3 3 3 3 13990000 22704000 30590 27744000 9681100 10190000 12490000 12483000 10734000 12725000 18291000 13025000 21204000 1029100 27685000 9348700 11515000 12468000 12584000 11265000 12418000 17411000 3 3 1 3 3 3 3 3 3 3 3 2025900000 1134100000 891800000 14208 767 13009 74638;74639;74640;74641 90100;90101;90102;90103;90104;90105 90100 6 NFFNPPIISR Unmodified 1203.64 0.64004252 51 CON__Q28107;P12259 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes no 0 0 0 0 By MS/MS 3 0 1 1 63.832 63.547 2 6.5846E-05 21575 20211116_3430_TMUAki_TMT10x_P_F3 129.63 85.49 + 3507000 5288400 83129 5785500 4574100 7555600 4909900 5591900 5634200 5706800 4882400 3266000 4936500 383170 5893500 4399300 7543900 4985200 5788000 5673500 5568800 4733200 1 1 1 1 1 1 1 1 1 1 1 3507000 5288400 83129 5785500 4574100 7555600 4909900 5591900 5634200 5706800 4882400 3266000 4936500 383170 5893500 4399300 7543900 4985200 5788000 5673500 5568800 4733200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 210600000 210600000 0 14209 51 13010 74642 90106 90106 1 NFGDQPDIR Unmodified 1060.4938 0.49377221 1798 Q15393 SF3B3 Splicing factor 3B subunit 3 yes yes 0 0 0 0 By MS/MS By MS/MS 2.75 0.829 2 1 1 1 3 37.083 36.951 2 0.00042002 11877 20211116_3441_TMUAki_TMT10x_S_F3 123.5 64.522 1663100 3124600 21244 3279100 3033600 2485400 2204800 2191400 2478300 1882000 2675100 1548600 2916200 176870 3322500 2889200 2574300 2288200 2233600 2516200 1850800 2574500 3 3 3 3 3 3 3 3 3 3 3 553710 882720 1304.7 1025800 1676200 1259100 755500 714030 789810 575650 923770 515570 824210 62844 1039900 1584200 1256000 815540 749340 806750 567910 886980 1 1 1 1 1 1 1 1 1 1 1 1109400 2241900 19939 2253300 1357400 1226400 1449300 1477400 1688500 1306400 1751300 1033100 2092000 114030 2282600 1305000 1318300 1472700 1484300 1709500 1282900 1687500 2 2 2 2 2 2 2 2 2 2 2 130290000 63296000 66998000 14210 1798 13011 74643;74644;74645;74646 90107;90108;90109;90110 90109 4 NFGEDMDDERLK Oxidation (M) 1483.6249 0.62492232 634 P11940;P11940-2;Q9H361 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 yes no 0 0 1 1 By MS/MS By MS/MS 2 0.894 2 1 2 3 2 38.156 38.036 3 0.00044138 12198 20211116_3441_TMUAki_TMT10x_S_F3 82.202 68.774 2677200 3788100 48976 5842700 7984200 4221800 3169500 2429200 2717000 1946400 3892400 2492800 3542400 311440 5791200 7535600 4360600 3452700 2545800 2825600 1920900 3718500 3 3 2 3 3 3 3 3 3 3 3 1982300 2728300 38910 4304500 7422600 3778300 2579700 1767300 1895000 1407600 2791400 1845700 2551600 246310 4272100 6995700 3836400 2848800 1887600 1989600 1389500 2665000 2 2 1 2 2 2 2 2 2 2 2 694890 1059900 10066 1538300 561670 443500 589810 661860 821950 538840 1101000 647090 990780 65127 1519100 539870 524250 603990 658230 835940 531330 1053500 1 1 1 1 1 1 1 1 1 1 1 294250000 237870000 56378000 14211 634 13012 74647;74648;74649;74650;74651 90111;90112;90113;90114 90114 661 4 NFGEDMDDERLK Unmodified 1467.63 0.63000769 634 P11940;P11940-2;Q9H361 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 yes no 0 0 0 1 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 44.966 44.812 3 6.0699E-16 13526 20211116_3429_TMUAki_TMT10x_P_F2 173.72 151.84 2808500 4263800 96730 7178700 6228800 3431400 3011800 2269400 2278400 1823000 4174600 2615700 3989500 370900 7061500 5897500 3700700 3200500 2352700 2417300 1798800 3968400 2 2 2 2 2 2 2 2 2 2 2 1368000 1987700 62627 3367200 5202100 2664800 2140800 1155600 1155000 857520 1952600 1274200 1859900 225480 3327100 4914800 2724200 2301000 1242100 1246500 849780 1858900 1 1 1 1 1 1 1 1 1 1 1 1440600 2276100 34103 3811500 1026800 766610 871010 1113900 1123400 965430 2222000 1341600 2129600 145420 3734400 982690 976590 899460 1110500 1170800 949010 2109500 1 1 1 1 1 1 1 1 1 1 1 153790000 82307000 71482000 14212 634 13012 74652;74653;74654 90115;90116;90117 90115 3 NFGEDMDDERLKDLFGK Oxidation (M) 2043.9208 0.92076999 634 P11940;P11940-2;Q9H361 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 yes no 0 0 1 2 By MS/MS By MS/MS 5 0 2 1 1 63.348 63.457 4 0.00058056 20142 20211116_3433_TMUAki_TMT10x_P_F5 63.337 48.723 5376200 9894700 161520 7472200 9201200 15390000 8490700 19833000 17730000 15877000 12193000 5007000 9223800 649830 7912400 8814500 15290000 8935600 19822000 17437000 15669000 11934000 2 2 2 2 2 2 2 2 2 2 2 2755800 4572200 62593 3439400 4115400 9573100 4969500 8961600 7886000 7329100 5735800 2566400 4262100 305850 3680500 3971300 9360300 5086400 9093500 7818700 7225200 5599700 1 1 1 1 1 1 1 1 1 1 1 2620400 5322500 98931 4032800 5085900 5816900 3521100 10871000 9844400 8548100 6457300 2440600 4961600 343980 4231900 4843200 5929400 3849200 10728000 9618100 8444200 6334000 1 1 1 1 1 1 1 1 1 1 1 944570000 490480000 454090000 14213 634 13013 74655;74656 90118;90119 90118 661 2 NFGEEVDDESLK Unmodified 1380.6045 0.60450445 1619 Q13310;Q13310-2;Q13310-3 PABPC4 Polyadenylate-binding protein 4 yes no 0 0 0 0 By MS/MS By matching 2.5 0.5 1 1 1 1 52.255 51.944 3 8.5041E-05 16377 20211116_3429_TMUAki_TMT10x_P_F2 94.747 79.775 2172000 3480600 9789.2 4175500 5407200 5330500 3164000 2624300 2855500 2515200 2874600 2022400 3250400 234510 4227800 5128900 5298300 3317100 2801500 2919100 2461000 2772400 1 1 1 1 1 1 1 1 1 1 1 2172000 3480600 9789.2 4175500 5407200 5330500 3164000 2624300 2855500 2515200 2874600 2022400 3250400 234510 4227800 5128900 5298300 3317100 2801500 2919100 2461000 2772400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 248780000 194960000 53820000 14214 1619 13014 74657;74658 90120 90120 1 NFGFSLQDALSR Unmodified 1353.6677 0.66771383 1720 Q14676;Q14676-2;Q14676-3;Q14676-4 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 71.478 71.408 2 1.4439E-14 22887 20211116_3436_TMUAki_TMT10x_P_F8 147.58 114.31 11447000 20585000 102460 17675000 14441000 17689000 14920000 14151000 13231000 14124000 16667000 10659000 19197000 1086400 18237000 13865000 17940000 15057000 14565000 13656000 13795000 15972000 3 3 3 3 3 3 3 3 3 3 3 3873100 6994800 42649 6124900 4342200 8113500 5394700 5093400 4626600 4829500 5790700 3606500 6523600 367420 6339600 4192500 8074900 5393300 5323100 4781700 4727700 5550100 1 1 1 1 1 1 1 1 1 1 1 7573500 13590000 59815 11550000 10099000 9576000 9525200 9057300 8604700 9294500 10876000 7052100 12674000 719010 11897000 9672700 9865500 9663300 9242100 8874700 9067700 10422000 2 2 2 2 2 2 2 2 2 2 2 743030000 446530000 296500000 14215 1720 13015 74659;74660;74661 90121;90122;90123;90124 90122 4 NFGIGQDIQPK Unmodified 1215.6248 0.62478638 1358 P62424 RPL7A 60S ribosomal protein L7a yes yes 0 0 0 0 By MS/MS By MS/MS 5.71 1.03 2 4 4 4 7 7 52.098 52.375 2;3 4.8641E-24 14362 20211116_3434_TMUAki_TMT10x_P_F6 255.39 226.05 53963000 87698000 391720 101280000 93065000 87123000 55933000 86984000 94322000 69410000 89172000 50246000 81883000 5142400 102150000 88310000 89625000 59865000 87920000 94094000 68513000 86181000 15 15 9 15 15 15 15 15 15 15 15 23524000 38236000 138210 43971000 70614000 66247000 36317000 37666000 41522000 30343000 38767000 21904000 35700000 2699600 44786000 66851000 65472000 38792000 39520000 41916000 29936000 37483000 7 7 4 7 7 7 7 7 7 7 7 30440000 49462000 253510 57307000 22452000 20876000 19617000 49317000 52800000 39067000 50405000 28343000 46183000 2442800 57363000 21458000 24154000 21074000 48400000 52178000 38577000 48698000 8 8 5 8 8 8 8 8 8 8 8 10157000000 6434800000 3722200000 14216 1358 13016 74662;74663;74664;74665;74666;74667;74668;74669;74670;74671;74672;74673;74674;74675 90125;90126;90127;90128;90129;90130;90131;90132;90133;90134;90135;90136;90137;90138;90139 90129 15 NFGIWLR Unmodified 904.49192 0.49192172 1495 Q02543 RPL18A 60S ribosomal protein L18a yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 64.386 64.357 2 0.019392 20833 20211116_3442_TMUAki_TMT10x_S_F4 88.643 36.955 9537200 16725000 0 16632000 13667000 14409000 11258000 8471300 7654100 8317400 12108000 8879300 15606000 753860 16941000 13038000 14683000 11434000 8908100 8102500 8129600 11543000 2 2 0 2 2 2 2 2 2 2 2 5689000 9449100 0 9677100 9156200 11531000 7467000 5716100 5537800 5550200 7012900 5296500 8817900 453770 9883900 8732600 11502000 7602700 6100300 5770500 5427400 6719400 1 1 0 1 1 1 1 1 1 1 1 3848200 7276300 0 6955300 4510800 2878100 3790800 2755200 2116300 2767300 5095400 3582800 6788300 300090 7057200 4305200 3180700 3831000 2807800 2332000 2702200 4823100 1 1 0 1 1 1 1 1 1 1 1 1117300000 749650000 367670000 14217 1495 13017 74676;74677 90140 90140 1 NFHYPPDGYSR Unmodified 1351.5945 0.59454889 284 O60716;O60716-3;O60716-2;O60716-6;O60716-5;O60716-7;O60716-9;O60716-8;O60716-10;O60716-12;O60716-14;O60716-11;O60716-13;O60716-16;O60716-15;O60716-4;O60716-23;O60716-22;O60716-24;O60716-17;O60716-20;O60716-18;O60716-19;O60716-21 CTNND1 Catenin delta-1 yes no 0 0 0 0 By matching By MS/MS 6 0 2 1 1 34.132 34.206 3 0.096593 7436 20211116_3445_TMUAki_TMT10x_S_F6 28.903 20.363 84308 135630 0 136760 94417 73420 96827 61413 76221 75546 99482 78496 126560 6725.9 138490 90566 78432 97451 63469 79269 73200 95246 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 84308 135630 0 136760 94417 73420 96827 61413 76221 75546 99482 78496 126560 6725.9 138490 90566 78432 97451 63469 79269 73200 95246 1 1 0 1 1 1 1 1 1 1 1 4744600 3393400 1351100 14218 284 13018 74678;74679 90141 90141 1 NFIAQGPYENR Unmodified 1307.6258 0.62584901 753 P21281 ATP6V1B2 V-type proton ATPase subunit B, brain isoform yes yes 0 0 0 0 By MS/MS 5 0 1 1 42.859 42.987 2 1.7038E-17 10708 20211116_3444_TMUAki_TMT10x_S_F5 194.06 157.04 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14219 753 13019 74680 90142 90142 1 NFILDQCNVYNSGQR Unmodified 1826.837 0.83698078 1874 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.707 2 4 2 4 4 55.196 55.515 2;3 3.2391E-51 17576 20211116_3435_TMUAki_TMT10x_P_F7 283.83 265.56 24433000 42850000 374550 40443000 34318000 43849000 29406000 37732000 35173000 33671000 35993000 22752000 39975000 2400700 41479000 32797000 44322000 30263000 38550000 35559000 33052000 34695000 10 10 7 10 10 10 10 10 10 10 10 14561000 25009000 196920 23201000 22697000 33652000 19841000 22021000 20618000 19835000 21369000 13558000 23329000 1406500 23953000 21696000 33377000 20299000 22911000 20968000 19462000 20591000 6 6 4 6 6 6 6 6 6 6 6 9872500 17841000 177630 17242000 11621000 10196000 9564800 15711000 14555000 13835000 14623000 9193500 16645000 994110 17527000 11101000 10946000 9964000 15639000 14591000 13590000 14104000 4 4 3 4 4 4 4 4 4 4 4 4027700000 2549500000 1478200000 14220 1874 13020 74681;74682;74683;74684;74685;74686;74687;74688 90143;90144;90145;90146;90147;90148;90149;90150;90151;90152;90153 90147 11 NFILDQTNVSAAAQR Unmodified 1646.8376 0.8376327 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 By MS/MS By MS/MS 6.4 1.08 4 4 4 3 7 8 54.196 54.436 2;3 1.205E-134 15575 20211116_3445_TMUAki_TMT10x_S_F6 405.77 363.02 101110000 177740000 677350 171430000 147800000 181850000 122500000 153030000 141480000 135610000 154410000 94139000 165830000 8715700 175490000 141060000 183970000 126170000 156530000 143560000 133160000 148550000 26 26 12 26 26 26 26 26 26 26 26 51580000 90183000 119380 85218000 95631000 134910000 79688000 77949000 72865000 69244000 79461000 48021000 84132000 4365800 88030000 91261000 133090000 81453000 81868000 74660000 67986000 76449000 11 11 3 11 11 11 11 11 11 11 11 49529000 87558000 557970 86211000 52173000 46942000 42814000 75085000 68610000 66363000 74946000 46118000 81696000 4349900 87457000 49804000 50876000 44716000 74660000 68895000 65173000 72101000 15 15 9 15 15 15 15 15 15 15 15 53549000000 26815000000 26735000000 14221 1474 13021 74689;74690;74691;74692;74693;74694;74695;74696;74697;74698;74699;74700;74701;74702;74703 90154;90155;90156;90157;90158;90159;90160;90161;90162;90163;90164;90165;90166;90167;90168;90169;90170;90171;90172;90173;90174;90175;90176;90177;90178;90179 90169 26 NFILDQTNVSAAAQRR Unmodified 1802.9387 0.93874373 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 1 By MS/MS By MS/MS 3 2.92 2 1 1 2 2 46.156 46.121 3 9.6744E-36 12423 20211116_3428_TMUAki_TMT10x_P_F1 211.78 188.4 13353000 21833000 91743 25315000 30636000 31193000 16916000 26044000 25365000 20162000 22239000 12432000 20386000 1305400 25667000 29027000 31299000 18137000 26564000 25323000 19934000 21550000 6 6 4 6 6 6 6 6 6 6 6 8851700 14461000 29608 17191000 25757000 27319000 13504000 16807000 16951000 12819000 14520000 8241000 13504000 869080 17496000 24383000 26970000 14445000 17499000 17007000 12684000 14082000 3 3 1 3 3 3 3 3 3 3 3 4501100 7372300 62134 8123800 4878400 3873300 3411500 9237400 8413700 7342700 7719200 4191400 6882000 436360 8171000 4644500 4328500 3692000 9064500 8316000 7249400 7467900 3 3 3 3 3 3 3 3 3 3 3 2049600000 965770000 1083800000 14222 1474 13022 74704;74705;74706;74707 90180;90181;90182;90183;90184;90185 90180 6 NFINNPLAQADWAAK Unmodified 1671.8369 0.83690442 934 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 2 1 73.193 73.178 2;3 1.5958E-33 23618 20211116_3436_TMUAki_TMT10x_P_F8 231.17 207.79 10154000 17404000 92599 16182000 11804000 14151000 14599000 6590400 6359800 7834700 12831000 9454300 16235000 868680 16564000 11389000 14372000 14407000 7119500 7060200 7600500 12177000 3 3 1 3 3 3 3 3 3 3 3 6817500 11409000 0 10176000 7694300 10871000 10242000 4220800 4217300 5296500 8281300 6347100 10642000 494940 10479000 7436400 10882000 10070000 4659200 4698200 5128500 7862900 2 2 0 2 2 2 2 2 2 2 2 3336300 5994400 92599 6005100 4110000 3280900 4356700 2369700 2142600 2538200 4549400 3107100 5593500 373740 6084700 3952700 3489900 4337800 2460400 2362000 2472000 4314100 1 1 1 1 1 1 1 1 1 1 1 2142600000 1502800000 639800000 14223 934 13023 74708;74709;74710 90186;90187;90188 90187 3 NFITAEELR Unmodified 1091.5611 0.56112349 235 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 50.237 50.369 2 0.00035489 16237 20211116_3430_TMUAki_TMT10x_P_F3 91.584 53.291 6192700 10507000 0 11532000 6097900 5318200 5158300 8988400 8914400 7520700 9733100 5765200 9808000 409860 11600000 5816700 5883600 5397700 8909600 8933600 7405500 9363800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6192700 10507000 0 11532000 6097900 5318200 5158300 8988400 8914400 7520700 9733100 5765200 9808000 409860 11600000 5816700 5883600 5397700 8909600 8933600 7405500 9363800 1 1 0 1 1 1 1 1 1 1 1 196030000 0 196030000 14224 235 13024 74711;74712;74713 90189;90190;90191 90189 3 NFITAEELRR Unmodified 1247.6622 0.66223452 235 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 1 By MS/MS By MS/MS 5.17 1.07 1 2 3 4 2 40.23 40.322 3 8.518E-11 10995 20211116_3433_TMUAki_TMT10x_P_F5 179.19 151.71 2825700 4328700 13490 4782800 2868600 2439600 2272100 3329300 3438300 3154100 3909100 2631100 4040900 247450 4812100 2736300 2649800 2372000 3334900 3463600 3087700 3756400 3 3 3 3 3 3 3 3 3 3 3 159660 222260 3334.9 267820 294700 334550 203970 185700 206440 193430 197880 148680 207560 18236 271000 280500 333360 211720 196550 209610 188590 191150 1 1 1 1 1 1 1 1 1 1 1 2666100 4106500 10155 4515000 2573900 2105000 2068200 3143600 3231900 2960700 3711200 2482500 3833300 229210 4541100 2455900 2316400 2160300 3138300 3254000 2899100 3565200 2 2 2 2 2 2 2 2 2 2 2 1159900000 449270000 710640000 14225 235 13025 74714;74715;74716;74717;74718;74719 90192;90193;90194;90195;90196 90193 5 NFIVWLEDQK Unmodified 1290.6608 0.66083754 3220 Q9Y224 C14orf166 UPF0568 protein C14orf166 yes yes 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 79.187 79.189 2 4.7669E-05 27517 20211116_3435_TMUAki_TMT10x_P_F7 102.06 77.907 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14226 3220 13026 74720;74721;74722 90197;90198;90199 90198 3 NFLELTELK Unmodified 1105.6019 0.60192568 2390 Q93050;Q93050-1;Q93050-3 ATP6V0A1 V-type proton ATPase 116 kDa subunit a isoform 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 74.877 74.817 2 3.1048E-05 23662 20211116_3434_TMUAki_TMT10x_P_F6 110.53 69.031 5883100 10364000 30927 8703000 9112000 8080700 8059000 7140400 6561500 7207700 8943300 5478000 9664900 561800 8986500 8712400 8249300 8183300 7309300 6825200 7036600 8553500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5883100 10364000 30927 8703000 9112000 8080700 8059000 7140400 6561500 7207700 8943300 5478000 9664900 561800 8986500 8712400 8249300 8183300 7309300 6825200 7036600 8553500 2 2 2 2 2 2 2 2 2 2 2 371170000 0 371170000 14227 2390 13027 74723;74724;74725 90200;90201;90202;90203 90200 4 NFLPGSGTEVIELCRPLDSR Unmodified 2259.1318 0.13176581 3170 Q9ULE3;Q9ULE3-2 DENND2A DENN domain-containing protein 2A yes no 0 0 0 1 By MS/MS By MS/MS 2.2 0.748 1 2 2 2 3 65.305 65 3 0.0063473 20423 20211116_3440_TMUAki_TMT10x_S_F2 53.779 30.45 30955000 53798000 511010 48962000 38754000 48588000 38457000 37085000 35321000 35662000 42339000 28826000 50181000 3151900 50285000 37183000 49262000 38927000 38244000 36320000 34888000 40625000 7 7 7 7 7 7 7 7 7 7 7 14149000 23956000 229510 22028000 14957000 28289000 18320000 16191000 15962000 16186000 18576000 13176000 22347000 1398300 22702000 14440000 28161000 18334000 17072000 16435000 15808000 17839000 3 3 3 3 3 3 3 3 3 3 3 16805000 29842000 281500 26934000 23797000 20299000 20137000 20894000 19359000 19477000 23762000 15650000 27835000 1753600 27583000 22742000 21102000 20593000 21171000 19885000 19080000 22786000 4 4 4 4 4 4 4 4 4 4 4 14467000000 7586700000 6880200000 14228 3170 13028 74726;74727;74728;74729;74730 90204;90205;90206;90207;90208;90209 90208 6 NFLPILFNLYGQPVAAGDTPAPR Unmodified 2470.3009 0.30088005 1920 Q5JTH9;Q5JTH9-2;Q5JTH9-3 RRP12 RRP12-like protein yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 81.289 81.292 3 3.4496E-11 26357 20211116_3444_TMUAki_TMT10x_S_F5 109.32 97.364 8653900 12813000 479260 13445000 7127800 12135000 10491000 6292800 7529900 8449500 9716300 8061200 11959000 1142800 13652000 6948100 12312000 10374000 6757500 7867600 8163400 9305300 4 4 4 4 4 4 4 4 4 4 4 4451100 5958000 208740 6644600 3704000 7359400 4834100 3025300 3721600 4338400 4771900 4146000 5562000 553100 6740800 3592600 7355800 4809900 3333900 3872000 4183000 4570800 2 2 2 2 2 2 2 2 2 2 2 4202800 6855300 270530 6800500 3423800 4775300 5657000 3267500 3808300 4111100 4944400 3915200 6396500 589650 6911200 3355500 4955800 5564100 3423500 3995500 3980400 4734500 2 2 2 2 2 2 2 2 2 2 2 2977600000 1401300000 1576300000 14229 1920 13029 74731;74732;74733 90210;90211;90212;90213 90212 4 NFLTTAIRPHGIFGPR Unmodified 1795.9846 0.98457171 1826 Q15738 NSDHL Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 54.939 54.963 4 1.7483E-05 16125 20211116_3436_TMUAki_TMT10x_P_F8 97.073 85.208 1789900 3246800 18723 3207000 2410500 2893400 2149000 2620600 2525700 2308500 2683600 1666700 3029500 174540 3269800 2305800 2960800 2205100 2668900 2558600 2267500 2583800 2 2 2 2 2 2 2 2 2 2 2 897050 1655500 7985.5 1495400 1379100 1976300 1284100 1296100 1274300 1170300 1245900 835300 1544200 88565 1544100 1320400 1968400 1307200 1348300 1295800 1148100 1202800 1 1 1 1 1 1 1 1 1 1 1 892880 1591300 10738 1711600 1031400 917050 864880 1324500 1251400 1138200 1437700 831440 1485300 85974 1725700 985420 992400 897960 1320600 1262800 1119300 1381100 1 1 1 1 1 1 1 1 1 1 1 553550000 365420000 188130000 14230 1826 13030 74734;74735 90214;90215 90214 2 NFLVFQGAVESIAMK Unmodified 1652.8596 0.8596137 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 0 By MS/MS 2 0 1 1 79.798 79.781 3 0.10831 27642 20211116_3429_TMUAki_TMT10x_P_F2 29.633 14.943 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14231 1723 13031 74736 90216 90216 1 NFLYAWCGK Unmodified 1157.5328 0.53280025 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 By MS/MS By MS/MS 3.6 0.49 2 3 3 2 69.092 68.945 2;3 0.00053641 22109 20211116_3431_TMUAki_TMT10x_P_F4 119.27 100.83 26826000 46907000 229910 44428000 36474000 45197000 36796000 25695000 23179000 25207000 34944000 24979000 43760000 2555300 45510000 34994000 45558000 36886000 27095000 24594000 24639000 33345000 5 5 4 5 5 5 5 5 5 5 5 19215000 33324000 99710 31114000 27389000 38420000 28863000 17981000 16981000 17800000 24655000 17891000 31086000 1782300 32007000 26304000 38230000 28832000 19308000 18067000 17392000 23546000 3 3 2 3 3 3 3 3 3 3 3 7611700 13583000 130200 13314000 9084500 6776300 7933100 7714000 6198200 7407100 10289000 7088200 12674000 773040 13504000 8689600 7327600 8053400 7786600 6526600 7246800 9798800 2 2 2 2 2 2 2 2 2 2 2 2020200000 1279400000 740770000 14232 1546 13032 74737;74738;74739;74740;74741 90217;90218;90219;90220;90221 90219 5 NFLYDIAGCSGTFTVQNR Unmodified 2061.9578 0.95782419 1128 P49915;P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 0 0 By MS/MS By MS/MS 1.75 0.433 1 3 2 2 76.11 76.035 2;3 4.6037E-59 26169 20211116_3429_TMUAki_TMT10x_P_F2 244.44 218.4 11655000 21468000 301670 18976000 13503000 15154000 13505000 13278000 12623000 13382000 16104000 10854000 20023000 1258100 19477000 12965000 15632000 13671000 13598000 13004000 13065000 15427000 5 5 4 5 5 5 5 5 5 5 5 2270000 3312100 50332 3235500 1749400 4126200 2604600 2192200 2180400 2226800 2822700 2114000 3090200 227810 3319400 1702000 4105100 2584100 2327500 2259500 2173400 2703000 1 1 1 1 1 1 1 1 1 1 1 9384700 18156000 251340 15740000 11754000 11028000 10900000 11086000 10443000 11155000 13281000 8739800 16933000 1030300 16158000 11263000 11527000 11087000 11270000 10745000 10892000 12724000 4 4 3 4 4 4 4 4 4 4 4 3105200000 1254900000 1850300000 14233 1128 13033 74742;74743;74744;74745 90222;90223;90224;90225;90226;90227 90223 6 NFMIDTYR Oxidation (M) 1074.4804 0.48043033 2379;2263 Q8TAQ2;Q8TAQ2-2;Q8TAQ2-3;Q92922 SMARCC2;SMARCC1 SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1 no no 0 0 1 0 By MS/MS By MS/MS 5 0 2 1 1 44.823 44.957 2 0.024147 11441 20211116_3444_TMUAki_TMT10x_S_F5 75.692 59.398 5027400 7722100 0 10845000 10806000 8823800 5688100 6513000 6657800 5459600 7365300 4680300 7217200 408990 10813000 10227000 9061900 6067300 6707100 6755900 5375500 7083200 2 2 0 2 2 2 2 2 2 2 2 2875000 4261600 0 6040500 9110000 7380700 4192000 3430600 3551800 2995700 4052300 2676200 3983200 240050 6056700 8605900 7347500 4489500 3674400 3659200 2943700 3893600 1 1 0 1 1 1 1 1 1 1 1 2152400 3460500 0 4804700 1695700 1443100 1496100 3082400 3106000 2463800 3313000 2004100 3234000 168940 4756400 1620700 1714400 1577800 3032700 3096700 2431800 3189600 1 1 0 1 1 1 1 1 1 1 1 291410000 118100000 173310000 14234 2263;2379 13034 74746;74747 90228;90229 90229 2645 2 NFPNAIEHTLQWAR Unmodified 1695.8481 0.84813781 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.14 3.09 2 2 1 2 3 4 62.363 62.261 3 3.3881E-33 19335 20211116_3440_TMUAki_TMT10x_S_F2 220.99 199.69 33718000 56111000 397310 50209000 41587000 56046000 46576000 41302000 36372000 38088000 43697000 31397000 52335000 3187400 51726000 40019000 56405000 46667000 42641000 37708000 37332000 41926000 10 10 7 10 10 10 10 10 10 10 10 17149000 29530000 197720 25028000 23418000 41198000 27012000 25279000 22442000 23166000 23416000 15968000 27538000 1623100 26092000 22552000 40615000 27070000 26442000 23066000 22712000 22558000 5 5 3 5 5 5 5 5 5 5 5 16570000 26581000 199590 25181000 18169000 14848000 19564000 16023000 13929000 14923000 20281000 15429000 24797000 1564300 25633000 17468000 15790000 19598000 16199000 14643000 14620000 19368000 5 5 4 5 5 5 5 5 5 5 5 6770300000 3058800000 3711500000 14235 769 13035 74748;74749;74750;74751;74752;74753;74754 90230;90231;90232;90233;90234;90235;90236;90237;90238;90239;90240 90238 11 NFQDFDCQEHDIETTHGVVHVTIR Unmodified 2896.3199 0.31985395 3110 Q9UGV2 NDRG3 Protein NDRG3 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 49.484 49.582 5 1.2827E-07 14166 20211116_3431_TMUAki_TMT10x_P_F4 92.147 87.621 7320400 12071000 185200 13690000 9518700 11593000 7440200 9882300 9338400 8995700 10379000 6817100 11269000 778830 13820000 9083900 11901000 7714400 10107000 9454100 8822200 9979700 3 3 2 3 3 3 3 3 3 3 3 4008200 6352100 41746 7735200 6801800 8638600 4859700 4609000 4439800 4294000 5324700 3732000 5932400 378860 7807000 6473600 8654100 5018000 4880100 4566500 4206800 5109200 2 2 1 2 2 2 2 2 2 2 2 3312200 5718500 143460 5954800 2716900 2953900 2580500 5273300 4898600 4701600 5053900 3085100 5336900 399960 6013300 2610300 3246500 2696400 5227300 4887500 4615400 4870500 1 1 1 1 1 1 1 1 1 1 1 1225400000 610610000 614800000 14236 3110 13036 74755;74756;74757;74758 90241;90242 90241 2 NFQETIHQLEGR Unmodified 1470.7215 0.72154031 3299 Q9Y4K3 TRAF6 TNF receptor-associated factor 6 yes yes 0 0 0 0 By MS/MS 4 0 1 1 50.914 51.076 3 0.00077753 14822 20211116_3431_TMUAki_TMT10x_P_F4 75.102 60.13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14237 3299 13037 74759 90243 90243 1 NFRKPGEK Unmodified 974.52976 0.52976379 1779 Q15233 NONO Non-POU domain-containing octamer-binding protein yes yes 0 0 0 2 By MS/MS By MS/MS 1 0 2 1 1 30.457 30.49 4 0.035676 8147 20211116_3439_TMUAki_TMT10x_S_F1 60.045 40.258 1317300 2109900 0 1559200 1452000 1537700 1430500 832400 1041100 892210 1412800 1226400 1966700 96528 1629200 1390800 1551900 1440100 883710 1089400 868920 1351400 2 2 0 2 2 2 2 2 2 2 2 642060 981380 0 704460 622840 868770 598520 391760 481740 420950 667340 597740 914700 42690 740680 595930 864190 604760 423260 501780 409920 638010 1 1 0 1 1 1 1 1 1 1 1 675220 1128500 0 854720 829210 668880 831980 440630 559390 471270 745480 628670 1052000 53838 888520 794870 687750 835330 460440 587610 459000 713380 1 1 0 1 1 1 1 1 1 1 1 32587000 19353000 13234000 14238 1779 13038 74760;74761 90244 90244 1 NFRNPLAK Unmodified 958.53485 0.53484916 520 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 1 By MS/MS By MS/MS 3.09 1.38 2 2 2 3 2 6 5 38.442 38.425 2;3 0.0002283 10423 20211116_3442_TMUAki_TMT10x_S_F4 147.04 91.135 57424000 88866000 291930 89184000 127130000 99488000 71099000 72839000 77672000 62822000 89520000 53463000 82922000 5244700 91114000 120460000 100120000 75252000 75103000 79151000 61767000 85990000 13 13 5 13 13 13 13 13 13 13 13 39180000 57728000 280170 59720000 103980000 82953000 50189000 48801000 52525000 42303000 59084000 36479000 53874000 3983600 61131000 98338000 82307000 53794000 51147000 53566000 41583000 56793000 7 7 2 7 7 7 7 7 7 7 7 18243000 31137000 11753 29465000 23147000 16535000 20910000 24037000 25147000 20519000 30436000 16984000 29048000 1261100 29984000 22118000 17811000 21458000 23956000 25585000 20185000 29197000 6 6 3 6 6 6 6 6 6 6 6 6510100000 4374700000 2135400000 14239 520 13039 74762;74763;74764;74765;74766;74767;74768;74769;74770;74771;74772 90245;90246;90247;90248;90249;90250;90251;90252;90253;90254;90255;90256;90257 90256 13 NFSEVFQK Unmodified 997.4869 0.48689592 3219 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 55.776 56.505 2 0.0018687 17946 20211116_3435_TMUAki_TMT10x_P_F7 116.52 72.074 4860400 7797200 0 9522000 12215000 12018000 6712000 6627500 5853100 5506000 7502000 4525500 7282100 502720 9629500 11574000 11968000 7069500 6976800 6050600 5423700 7185900 1 1 0 1 1 1 1 1 1 1 1 4860400 7797200 0 9522000 12215000 12018000 6712000 6627500 5853100 5506000 7502000 4525500 7282100 502720 9629500 11574000 11968000 7069500 6976800 6050600 5423700 7185900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 476450000 476450000 0 14240 3219 13040 74773;74774 90258;90259 90258 2 NFSGAELEGLVR Unmodified 1290.6568 0.65681479 1048 P46459;P46459-2 NSF Vesicle-fusing ATPase yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 61.302 61.355 2 1.9478E-19 19496 20211116_3442_TMUAki_TMT10x_S_F4 228.06 185.77 9301400 16011000 207810 15310000 11571000 12785000 10822000 11927000 10834000 11029000 12193000 8662100 14937000 996610 15631000 11088000 13161000 11017000 12143000 11069000 10808000 11720000 2 2 2 2 2 2 2 2 2 2 2 4309200 7354200 189800 7399800 5656800 7899000 5699600 5060900 4394600 4632700 5545200 4013700 6862400 553020 7553200 5436600 7952400 5738700 5276000 4568700 4542200 5313600 1 1 1 1 1 1 1 1 1 1 1 4992300 8656600 18005 7910600 5914000 4886400 5122200 6866300 6438900 6396000 6647400 4648400 8074700 443580 8077600 5651800 5209000 5277800 6867200 6500300 6266000 6406000 1 1 1 1 1 1 1 1 1 1 1 2124800000 1344700000 780060000 14241 1048 13041 74775;74776;74777;74778 90260;90261;90262 90261 3 NFSGTASTSLLGPPPGLLTPPVATELSQNAR Unmodified 3092.6142 0.61422828 2181 Q8N163;Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 2.75 0.433 1 3 3 1 78.981 78.913 3;4 1.2075E-15 27799 20211116_3430_TMUAki_TMT10x_P_F3 117.88 104.95 5488900 9140400 20891 8257600 6006000 8807700 6640200 6201800 5296100 5456600 7153100 5110600 8525700 448260 8494700 5773800 8880200 6660600 6414800 5512600 5359900 6842900 3 3 1 3 3 3 3 3 3 3 3 4035600 6496300 0 5784300 3720200 6837400 4524700 4520300 3859600 3819500 5155000 3757200 6059100 296640 5966900 3585200 6848500 4526900 4691900 4001600 3759200 4932700 2 2 0 2 2 2 2 2 2 2 2 1453300 2644100 20891 2473300 2285700 1970200 2115500 1681500 1436500 1637200 1998200 1353300 2466600 151620 2527700 2188700 2031700 2133700 1722900 1511000 1600800 1910200 1 1 1 1 1 1 1 1 1 1 1 2682800000 1645600000 1037200000 14242 2181 13042 74779;74780;74781;74782 90263;90264;90265 90264 3 NFTMDTESSVYNFEGEDYREK Oxidation (M) 2576.0649 0.06492762 260 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 0 0 1 1 By MS/MS By MS/MS 2.4 1.02 1 2 1 1 4 1 56.153 56.074 3 9.3675E-20 16854 20211116_3431_TMUAki_TMT10x_P_F4 157.28 153.09 26506000 47238000 190660 43126000 37408000 71814000 38384000 45082000 47899000 41695000 39745000 24680000 44062000 2368600 44715000 35894000 70789000 39178000 47084000 48024000 40861000 38593000 11 11 5 11 11 11 11 11 11 11 11 26506000 47238000 190660 43126000 37408000 71814000 38384000 45082000 47899000 41695000 39745000 24680000 44062000 2368600 44715000 35894000 70789000 39178000 47084000 48024000 40861000 38593000 11 11 5 11 11 11 11 11 11 11 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3119600000 3119600000 0 14243 260 13043 74783;74784;74785;74786;74787 90266;90267;90268;90269;90270;90271;90272;90273;90274;90275;90276;90277 90274 206 12 NFTMDTESSVYNFEGEDYREK Unmodified 2560.07 0.070012998 260 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 0 0 0 1 By MS/MS 3.5 0.5 1 1 2 61.51 61.432 3 1.0051E-55 20774 20211116_3430_TMUAki_TMT10x_P_F3 234.04 225.56 7469700 12406000 4383.4 12503000 8743200 10435000 9816800 3447800 2434300 4035700 7906600 6954800 11577000 596990 12717000 8407800 10601000 9672900 3875700 2993700 3917300 7457800 3 3 1 3 3 3 3 3 3 3 3 7469700 12406000 4383.4 12503000 8743200 10435000 9816800 3447800 2434300 4035700 7906600 6954800 11577000 596990 12717000 8407800 10601000 9672900 3875700 2993700 3917300 7457800 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1060300000 1060300000 0 14244 260 13043 74788;74789 90278;90279;90280 90278 3 NFTTEQVTAMLLSK Oxidation (M) 1597.8022 0.8021584 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 1 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 71.272 71.368 3 1.3525E-06 22831 20211116_3436_TMUAki_TMT10x_P_F8 113.4 95.031 19015000 31585000 6907.9 29502000 23253000 38852000 24540000 23547000 23679000 25229000 25857000 17704000 29464000 1528000 30384000 22321000 38659000 24798000 24763000 24204000 24571000 24876000 5 5 1 5 5 5 5 5 5 5 5 15983000 26420000 6907.9 24865000 19864000 35118000 20775000 19414000 19916000 20891000 21420000 14881000 24647000 1281800 25629000 19063000 34791000 20999000 20576000 20352000 20343000 20617000 4 4 1 4 4 4 4 4 4 4 4 3031300 5165000 0 4637100 3389300 3733500 3764200 4132300 3763000 4337800 4436800 2822400 4817500 246190 4754400 3258600 3868100 3798600 4187500 3852200 4228100 4259200 1 1 0 1 1 1 1 1 1 1 1 1709100000 907230000 801820000 14245 916 13044 74790;74791;74792 90281;90282;90283;90284;90285 90284 1155 5 NFVCEHCFGAFR Unmodified 1542.6496 0.6496377 2240 Q8NDX6 ZNF740 Zinc finger protein 740 yes yes 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 47.549 47.457 3 0.00068116 12621 20211116_3447_TMUAki_TMT10x_S_F8 78.964 71.053 4211800 6652900 0 7096400 4568200 3896500 4091300 5499100 5686200 4830400 5950000 3921200 6209500 300670 7160300 4364700 4202900 4224300 5490200 5724300 4745200 5731500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4211800 6652900 0 7096400 4568200 3896500 4091300 5499100 5686200 4830400 5950000 3921200 6209500 300670 7160300 4364700 4202900 4224300 5490200 5724300 4745200 5731500 1 1 0 1 1 1 1 1 1 1 1 179200000 0 179200000 14246 2240 13045 74793;74794 90286;90287 90287 2 NFVELISHQQLSK Unmodified 1541.8202 0.82019173 3006 Q9NXF1;Q9NXF1-2 TEX10 Testis-expressed sequence 10 protein yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 61.409 61.388 3 4.9277E-12 18715 20211116_3436_TMUAki_TMT10x_P_F8 153.09 132.71 19938000 33366000 298970 33093000 24823000 33842000 23751000 24804000 23853000 23509000 26569000 18566000 31133000 1948600 33791000 23790000 34227000 24151000 25636000 24358000 23013000 25546000 5 5 4 5 5 5 5 5 5 5 5 13070000 20901000 139700 21235000 17524000 27136000 16946000 15565000 15117000 14509000 16753000 12170000 19504000 1224700 21728000 16793000 27021000 17163000 16378000 15517000 14214000 16111000 3 3 2 3 3 3 3 3 3 3 3 6868500 12464000 159280 11858000 7299400 6706000 6805200 9238600 8735600 8999500 9815600 6396500 11628000 723920 12063000 6996200 7206400 6988400 9258200 8840800 8799200 9435300 2 2 2 2 2 2 2 2 2 2 2 1971700000 1183400000 788290000 14247 3006 13046 74795;74796;74797;74798 90288;90289;90290;90291;90292 90289 5 NFVGPPHFQVICR Unmodified 1569.7875 0.78745181 2060 Q7L576;Q7L576-2;Q7L576-3 CYFIP1 Cytoplasmic FMR1-interacting protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 51.604 51.236 3 5.4258E-10 17623 20211116_3441_TMUAki_TMT10x_S_F3 138.42 117.12 1541300 2536600 83248 2961700 1507300 1360200 1254600 2007200 2110900 2019400 2362600 1435700 2368500 204890 2967400 1444000 1499000 1312300 2008500 2118900 1971700 2271300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1541300 2536600 83248 2961700 1507300 1360200 1254600 2007200 2110900 2019400 2362600 1435700 2368500 204890 2967400 1444000 1499000 1312300 2008500 2118900 1971700 2271300 1 1 1 1 1 1 1 1 1 1 1 127590000 0 127590000 14248 2060 13047 74799;74800 90293;90294 90294 2 NFVVVMVTKPK Oxidation (M) 1276.7213 0.7213293 1227 P54727 RAD23B UV excision repair protein RAD23 homolog B yes yes 0 0 1 1 By MS/MS By MS/MS 4 0 2 1 1 50.712 50.847 3 0.0042214 14699 20211116_3431_TMUAki_TMT10x_P_F4 67.153 55.306 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14249 1227 13048 74801;74802 90295;90296 90295 1645 2 NFVVVMVTKPK Unmodified 1260.7264 0.72641468 1227 P54727 RAD23B UV excision repair protein RAD23 homolog B yes yes 0 0 0 1 By MS/MS 5 0 1 1 58.906 59.026 3 0.001769 17214 20211116_3444_TMUAki_TMT10x_S_F5 73.466 59.308 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14250 1227 13048 74803 90297 90297 1 NFWVSGLSSTTR Unmodified 1353.6677 0.66771383 1804 Q15424;Q15424-3;Q15424-2;Q15424-4 SAFB Scaffold attachment factor B1 yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 59.386 59.396 2 9.1537E-09 18708 20211116_3442_TMUAki_TMT10x_S_F4 148.76 119.86 12867000 22570000 442140 23088000 17491000 19231000 17788000 10276000 9031300 11778000 17152000 11984000 21062000 1543600 23459000 16805000 19628000 17757000 10944000 9859100 11441000 16294000 2 2 2 2 2 2 2 2 2 2 2 7017800 12370000 224890 12470000 11150000 14011000 11696000 5830400 5110900 6702200 9707200 6536000 11543000 849290 12737000 10718000 13994000 11632000 6366900 5650700 6509800 9221900 1 1 1 1 1 1 1 1 1 1 1 5849400 10199000 217250 10618000 6341100 5220700 6091900 4445100 3920400 5075300 7444600 5448000 9518700 694310 10722000 6087100 5634000 6125100 4577500 4208400 4930900 7072400 1 1 1 1 1 1 1 1 1 1 1 1265000000 741500000 523470000 14251 1804 13049 74804;74805 90298;90299 90299 2 NFYELSPHIFALSDEAYR Unmodified 2171.0324 0.032369346 245 O43795;O43795-2 MYO1B Unconventional myosin-Ib yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 74.616 74.792 3 3.7823E-12 25586 20211116_3435_TMUAki_TMT10x_P_F7 129.12 116.29 7405300 13117000 339490 12154000 9003500 13473000 10744000 8235000 7316500 8292200 9815100 6897600 12236000 952730 12487000 8697300 13526000 10701000 8638900 7681900 8096200 9390900 3 3 3 3 3 3 3 3 3 3 3 5207700 9254600 201110 8462700 5935400 10492000 7631000 5716100 5116400 5746000 6805300 4850400 8632600 629370 8719600 5746000 10456000 7573900 6053600 5375000 5610600 6512500 2 2 2 2 2 2 2 2 2 2 2 2197700 3862400 138380 3691700 3068100 2980300 3113200 2519000 2200100 2546200 3009800 2047300 3603300 323360 3767600 2951400 3069600 3127200 2585200 2306900 2485600 2878400 1 1 1 1 1 1 1 1 1 1 1 1595500000 673090000 922450000 14252 245 13050 74806;74807 90300;90301;90302 90300 3 NFYNEHEEITNLTPQQLIDLR Unmodified 2586.2714 0.27143042 2125 Q86XP3;Q86XP3-2 DDX42 ATP-dependent RNA helicase DDX42 yes no 0 0 0 0 By MS/MS By MS/MS 4.62 0.992 1 3 2 2 4 4 71.711 71.657 3 2.5529E-19 23710 20211116_3442_TMUAki_TMT10x_S_F4 146.72 137.62 11955000 20571000 74295 18769000 13830000 21204000 14602000 12522000 12946000 13964000 15891000 11131000 19188000 802960 19311000 13280000 21256000 14720000 13213000 13347000 13579000 15238000 8 8 3 8 8 8 8 8 8 8 8 7849000 12942000 61063 12000000 8116100 16139000 9537600 8498800 8766900 9333700 10318000 7308600 12073000 503290 12371000 7821300 16015000 9576200 9051600 9007600 9081400 9905600 5 5 2 5 5 5 5 5 5 5 5 4106000 7628900 13232 6768300 5714000 5064700 5064400 4023000 4178700 4630400 5572800 3822500 7115300 299660 6940100 5458400 5241200 5143600 4161100 4339300 4497300 5332700 3 3 1 3 3 3 3 3 3 3 3 5441400000 2635500000 2805800000 14253 2125 13051 74808;74809;74810;74811;74812;74813;74814;74815 90303;90304;90305;90306;90307;90308;90309;90310;90311;90312 90309 10 NFYQEHPDLAR Unmodified 1388.6473 0.64731274 710 P17844;P17844-2 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 0 By MS/MS By MS/MS 3.12 1.54 2 1 1 2 2 4 4 35.896 35.846 3 1.3693E-16 11306 20211116_3441_TMUAki_TMT10x_S_F3 213.63 196.16 6593600 10636000 70578 12617000 16403000 13195000 8677900 9348600 10372000 7623500 10714000 6139000 9932200 656110 12740000 15532000 13321000 9258700 9647600 10489000 7516600 10325000 9 9 5 9 9 9 9 9 9 9 9 4940900 7806400 65074 9309600 14913000 11904000 7211100 6967300 7747800 5724800 7890900 4600300 7289800 522280 9429900 14104000 11856000 7733900 7295800 7863600 5642300 7607700 6 6 4 6 6 6 6 6 6 6 6 1652600 2829900 5503.7 3307600 1489600 1291800 1466800 2381400 2624000 1898700 2823000 1538800 2642400 133830 3310400 1427700 1464800 1524900 2351800 2625900 1874300 2717100 3 3 1 3 3 3 3 3 3 3 3 3462300000 2908800000 553500000 14254 710 13052 74816;74817;74818;74819;74820;74821;74822;74823 90313;90314;90315;90316;90317;90318;90319;90320;90321;90322 90320 10 NFYQEHPDLARR Unmodified 1544.7484 0.74842377 710 P17844;P17844-2 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 1 By MS/MS 5 0 2 2 32.238 32.178 3;4 3.2324E-09 7555 20211116_3433_TMUAki_TMT10x_P_F5 150.49 135.45 939350 1434800 4213 1611000 2350100 1995700 1179200 1119700 1315500 919670 1268100 874650 1339500 100870 1636800 2224100 1989700 1261500 1176600 1330600 906440 1224800 2 2 1 2 2 2 2 2 2 2 2 939350 1434800 4213 1611000 2350100 1995700 1179200 1119700 1315500 919670 1268100 874650 1339500 100870 1636800 2224100 1989700 1261500 1176600 1330600 906440 1224800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 268000000 268000000 0 14255 710 13053 74824;74825 90323;90324 90323 2 NFYVEHPEVAR Unmodified 1359.6571 0.65714914 2368 Q92841;Q92841-3;Q92841-1;Q92841-2 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 0 0 By MS/MS By MS/MS 3.11 1.37 1 3 1 2 2 5 4 36.641 36.601 2;3 2.2059E-08 9288 20211116_3433_TMUAki_TMT10x_P_F5 144.57 113.15 16003000 25661000 81745 27120000 25601000 26441000 19089000 16379000 18344000 16202000 20402000 14900000 23950000 1383700 27554000 24379000 26753000 19680000 17156000 18768000 15831000 19617000 9 9 5 9 9 9 9 9 9 9 9 11306000 17686000 56739 19235000 20928000 22461000 14081000 11463000 12787000 11433000 14360000 10527000 16509000 996940 19562000 19890000 22435000 14601000 12209000 13121000 11167000 13804000 6 6 3 6 6 6 6 6 6 6 6 4697300 7975500 25006 7884600 4673000 3980800 5007300 4916200 5557100 4768700 6042300 4373600 7441600 386760 7991600 4488900 4317200 5078600 4946800 5646600 4663500 5813800 3 3 2 3 3 3 3 3 3 3 3 2121500000 1686600000 434840000 14256 2368 13054 74826;74827;74828;74829;74830;74831;74832;74833;74834 90325;90326;90327;90328;90329;90330;90331;90332;90333;90334 90329 10 NFYVEVPELAK Unmodified 1307.6762 0.67615325 2049 Q7L014 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 0 0 0 0 By MS/MS By MS/MS 5.3 1.27 1 4 4 1 6 4 71.044 71.074 2;3 3.8641E-08 22097 20211116_3434_TMUAki_TMT10x_P_F6 150.1 126.07 44167000 71721000 645790 71375000 51002000 69135000 51098000 52471000 50000000 52357000 59043000 41128000 66922000 4330700 72805000 48943000 70193000 51792000 54186000 51236000 51139000 56677000 11 11 8 11 11 11 11 11 11 11 11 23956000 38026000 406320 37855000 27048000 46918000 29518000 26586000 25935000 27179000 31273000 22308000 35481000 2389300 38766000 26020000 46781000 29701000 28074000 26730000 26520000 30003000 6 6 4 6 6 6 6 6 6 6 6 20211000 33695000 239460 33520000 23954000 22217000 21580000 25885000 24066000 25178000 27770000 18820000 31441000 1941400 34040000 22922000 23413000 22091000 26112000 24505000 24619000 26674000 5 5 4 5 5 5 5 5 5 5 5 4234000000 2423100000 1810900000 14257 2049 13055 74835;74836;74837;74838;74839;74840;74841;74842;74843;74844 90335;90336;90337;90338;90339;90340;90341;90342;90343;90344;90345;90346 90338 12 NFYYAAVPSAR Unmodified 1257.6142 0.6142217 1556 Q10471 GALNT2 Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form yes yes 0 0 0 0 By MS/MS 1 0 1 1 50.223 49.961 2 0.0016511 16057 20211116_3439_TMUAki_TMT10x_S_F1 80.706 52.934 1404400 2424300 0 2629500 1464200 1326100 994450 2227900 2338800 2078400 2284200 1307600 2262900 113510 2648500 1391900 1451600 1074900 2215200 2318500 2036100 2205200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1404400 2424300 0 2629500 1464200 1326100 994450 2227900 2338800 2078400 2284200 1307600 2262900 113510 2648500 1391900 1451600 1074900 2215200 2318500 2036100 2205200 1 1 0 1 1 1 1 1 1 1 1 89530000 0 89530000 14258 1556 13056 74845 90347 90347 1 NGAPIIMSFPHFYQADER Oxidation (M) 2107.9786 0.97855964 1676 Q14108;Q14108-2 SCARB2 Lysosome membrane protein 2 yes no 0 0 1 0 By MS/MS 6 0 1 1 59.133 59.154 3 0.0070012 17605 20211116_3445_TMUAki_TMT10x_S_F6 52.19 41.555 2465400 4670300 7297.7 4495200 3214800 2555900 2559600 3604500 3816700 3312500 4115100 2295500 4357200 221690 4569200 3066500 2747000 2669400 3603200 3838400 3247200 3960500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2465400 4670300 7297.7 4495200 3214800 2555900 2559600 3604500 3816700 3312500 4115100 2295500 4357200 221690 4569200 3066500 2747000 2669400 3603200 3838400 3247200 3960500 1 1 1 1 1 1 1 1 1 1 1 519710000 0 519710000 14259 1676 13057 74846 90348 90348 2244 1 NGDFLPTR Unmodified 918.45593 0.45593014 1232 P55036;P55036-2 PSMD4 26S proteasome non-ATPase regulatory subunit 4 yes no 0 0 0 0 By MS/MS 4 0 1 1 38.41 38.591 2 0.09317 10187 20211116_3442_TMUAki_TMT10x_S_F4 49.715 25.76 639690 1076400 0 1085400 652300 630750 749080 623190 689320 585230 905250 595550 1004400 45439 1099900 627390 670440 752910 632860 711540 573130 866580 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 639690 1076400 0 1085400 652300 630750 749080 623190 689320 585230 905250 595550 1004400 45439 1099900 627390 670440 752910 632860 711540 573130 866580 1 1 0 1 1 1 1 1 1 1 1 15154000 0 15154000 14260 1232 13058 74847 90349 90349 1 NGENGIHFLLNR Unmodified 1382.7055 0.70549632 1569 Q12849;Q12849-5 GRSF1 G-rich sequence factor 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 46.323 46.649 3 5.9249E-06 14487 20211116_3446_TMUAki_TMT10x_S_F7 103.14 88.689 8930500 14386000 148150 15420000 15372000 16855000 10788000 13755000 12641000 10610000 13037000 8316300 13427000 968690 15679000 14633000 17012000 11240000 14048000 12793000 10492000 12564000 5 5 5 5 5 5 5 5 5 5 5 5901700 9453400 118770 9985300 12733000 14326000 8406900 9584000 8743200 7139900 8785400 5496000 8823000 695660 10214000 12108000 14220000 8764100 9910500 8881500 7073900 8473600 3 3 3 3 3 3 3 3 3 3 3 3028800 4932500 29382 5434700 2638700 2528900 2381100 4171300 3897300 3469900 4252000 2820300 4604400 273030 5465400 2525400 2792400 2475700 4137200 3911100 3417800 4090700 2 2 2 2 2 2 2 2 2 2 2 649330000 309230000 340100000 14261 1569 13059 74848;74849;74850;74851 90350;90351;90352;90353;90354 90354 5 NGFLLDGFPR Unmodified 1134.5822 0.58219329 1228 P54819;P54819-5;P54819-2;P54819-6;P54819-3;P54819-4 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 66.862 67.111 2 1.426E-06 22285 20211116_3435_TMUAki_TMT10x_P_F7 154.81 127.04 42348000 72306000 943350 65484000 54773000 64703000 51045000 52043000 44895000 48787000 59009000 39438000 67443000 4564200 67275000 52483000 65679000 51781000 53455000 46443000 47782000 56487000 6 6 6 6 6 6 6 6 6 6 6 17427000 28920000 518920 27677000 22386000 38161000 23577000 22334000 19650000 21519000 25090000 16230000 26981000 1997900 28480000 21527000 37874000 23732000 23482000 20355000 21050000 24035000 2 2 2 2 2 2 2 2 2 2 2 24922000 43385000 424430 37807000 32387000 26542000 27467000 29709000 25246000 27268000 33919000 23208000 40462000 2566300 38795000 30956000 27805000 28050000 29973000 26088000 26732000 32452000 4 4 4 4 4 4 4 4 4 4 4 3060600000 1516800000 1543800000 14262 1228 13060 74852;74853;74854;74855 90355;90356;90357;90358;90359;90360 90355 6 NGFLNLALPFFGFSEPLAAPR Unmodified 2277.1946 0.19462407 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By MS/MS 6 0 1 1 83.379 83.393 3 2.2331E-19 27481 20211116_3445_TMUAki_TMT10x_S_F6 148.44 130.03 129070 216100 0 196460 166880 183940 173680 157600 164260 180610 197680 120170 201570 10937 201620 160160 187560 175520 162260 168710 175450 189660 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 129070 216100 0 196460 166880 183940 173680 157600 164260 180610 197680 120170 201570 10937 201620 160160 187560 175520 162260 168710 175450 189660 1 1 0 1 1 1 1 1 1 1 1 27805000 0 27805000 14263 769 13061 74856 90361 90361 1 NGFVVLK Unmodified 775.45922 0.4592246 1404 P63241;P63241-2;Q6IS14;Q9GZV4 EIF5A;EIF5AL1;EIF5A2 Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like;Eukaryotic translation initiation factor 5A-2 yes no 0 0 0 0 By MS/MS By MS/MS 4.86 3.09 2 1 2 2 3 4 52.137 52.244 2 0.0012871 16978 20211116_3439_TMUAki_TMT10x_S_F1 143.37 106.81 90131000 146580000 863110 145570000 140770000 130190000 93021000 96578000 103760000 87528000 125170000 83921000 136770000 8121500 148340000 133770000 132820000 97184000 99620000 105850000 85857000 120080000 9 9 6 9 9 9 9 9 9 9 9 52141000 82665000 70502 82645000 100200000 93359000 50236000 54856000 59362000 48667000 70554000 48542000 77135000 4212900 84473000 94773000 93581000 53851000 57531000 60388000 47785000 67715000 4 4 2 4 4 4 4 4 4 4 4 37991000 63915000 792610 62921000 40567000 36830000 42785000 41723000 44398000 38861000 54614000 35379000 59636000 3908600 63870000 39000000 39240000 43333000 42088000 45459000 38071000 52368000 5 5 4 5 5 5 5 5 5 5 5 4267400000 2401400000 1866000000 14264 1404 13062 74857;74858;74859;74860;74861;74862;74863 90362;90363;90364;90365;90366;90367;90368;90369;90370 90366 9 NGGHFVISIK Unmodified 1070.5873 0.58727866 765 P22087 FBL rRNA 2'-O-methyltransferase fibrillarin yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 44.265 44.202 3 0.00014119 13689 20211116_3439_TMUAki_TMT10x_S_F1 111.27 77.079 17284000 26135000 235280 27273000 24170000 25750000 18103000 18221000 16675000 17339000 22934000 16095000 24391000 1744300 27719000 23036000 26157000 18636000 18880000 17249000 16971000 21930000 7 7 6 7 7 7 7 7 7 7 7 11799000 17255000 207940 17601000 19267000 21200000 13077000 12353000 11035000 11804000 15704000 10988000 16102000 1272200 17985000 18330000 21176000 13525000 12989000 11481000 11551000 15005000 4 4 3 4 4 4 4 4 4 4 4 5485100 8880100 27336 9671500 4902900 4550200 5026200 5868700 5640300 5535100 7229700 5107400 8289000 472080 9734000 4705900 4980900 5110800 5890400 5767500 5419600 6925100 3 3 3 3 3 3 3 3 3 3 3 1614200000 1105900000 508270000 14265 765 13063 74864;74865;74866;74867;74868;74869 90371;90372;90373;90374;90375;90376;90377 90375 7 NGGLGHMNIALLSDLTK Unmodified 1752.9193 0.91925384 862 P30048;P30048-2 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 70.359 70.3 3 4.426E-07 24340 20211116_3439_TMUAki_TMT10x_S_F1 101.9 87.23 92627000 152980000 478950 160590000 119380000 137940000 103880000 110050000 106780000 110900000 118880000 86242000 142770000 7709400 162950000 114050000 141290000 106270000 113320000 108930000 108280000 114300000 7 7 3 7 7 7 7 7 7 7 7 52304000 83017000 323620 85823000 72283000 99615000 64230000 63188000 60771000 62961000 65711000 48698000 77474000 4348900 87562000 69088000 99812000 65465000 66077000 62151000 61501000 63236000 3 3 2 3 3 3 3 3 3 3 3 40323000 69959000 155320 74767000 47095000 38325000 39653000 46862000 46009000 47943000 53164000 37544000 65297000 3360500 75390000 44964000 41483000 40808000 47248000 46782000 46779000 51064000 4 4 1 4 4 4 4 4 4 4 4 3543500000 1905200000 1638300000 14266 862 13064 74870;74871;74872;74873 90378;90379;90380;90381;90382;90383;90384 90381 7 NGGLGHMNIALLSDLTK Oxidation (M) 1768.9142 0.91416847 862 P30048;P30048-2 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 7.45 0.498 6 5 2 9 64.088 64.282 3 1.3363E-07 17779 20211116_3447_TMUAki_TMT10x_S_F8 103.5 85.485 50352000 86856000 403280 82155000 61642000 90538000 58834000 70202000 73582000 67088000 73021000 46882000 81029000 4196300 84269000 59026000 91260000 60281000 72309000 74192000 65650000 70458000 13 13 7 13 13 13 13 13 13 13 13 30177000 49775000 320880 49348000 39381000 68026000 38538000 40220000 44026000 40031000 43361000 28097000 46444000 2526200 50653000 37732000 67524000 39304000 42290000 44525000 39105000 41849000 4 4 2 4 4 4 4 4 4 4 4 20175000 37081000 82399 32807000 22261000 22512000 20297000 29982000 29556000 27056000 29660000 18785000 34585000 1670000 33616000 21294000 23736000 20977000 30019000 29666000 26545000 28608000 9 9 5 9 9 9 9 9 9 9 9 4926400000 2685100000 2241300000 14267 862 13064 74874;74875;74876;74877;74878;74879;74880;74881;74882;74883;74884 90385;90386;90387;90388;90389;90390;90391;90392;90393;90394;90395;90396;90397;90398;90399 90398 1029 15 NGGLITLEELHQQVLK Unmodified 1790.989 0.98904797 2481 Q96H20;Q96H20-2 SNF8 Vacuolar-sorting protein SNF8 yes no 0 0 0 0 By MS/MS 7 0 1 1 63.862 64.294 3 7.9128E-11 21696 20211116_3446_TMUAki_TMT10x_S_F7 131.56 112.23 2915800 5097900 62668 4399000 3916500 3314400 3196100 4120700 3525300 3557200 4098300 2715300 4754200 314160 4520800 3741000 3461500 3289800 4132100 3592300 3497400 3935700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2915800 5097900 62668 4399000 3916500 3314400 3196100 4120700 3525300 3557200 4098300 2715300 4754200 314160 4520800 3741000 3461500 3289800 4132100 3592300 3497400 3935700 1 1 1 1 1 1 1 1 1 1 1 606710000 0 606710000 14268 2481 13065 74885 90400 90400 1 NGGQILIADLR Unmodified 1168.6564 0.65642086 1244 P55735;P55735-2;P55735-4;P55735-3 SEC13 Protein SEC13 homolog yes no 0 0 0 0 By MS/MS 5 0 2 2 54.703 54.876 2 0.0012576 15479 20211116_3444_TMUAki_TMT10x_S_F5 83.309 55.592 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14269 1244 13066 74886;74887 90401;90402 90401 2 NGIDILVGTPGR Unmodified 1210.667 0.66698555 2918;2621 Q9NR30;Q9NR30-2;Q9BQ39 DDX21;DDX50 Nucleolar RNA helicase 2;ATP-dependent RNA helicase DDX50 no no 0 0 0 0 By MS/MS 6 0 1 1 56.324 56.397 2 1.4213E-05 16452 20211116_3445_TMUAki_TMT10x_S_F6 105.2 79.31 26235000 47538000 388240 44365000 26714000 28038000 23426000 52293000 55608000 49641000 44722000 24431000 44347000 2543600 45239000 25555000 30116000 24930000 51864000 54777000 48591000 43479000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26235000 47538000 388240 44365000 26714000 28038000 23426000 52293000 55608000 49641000 44722000 24431000 44347000 2543600 45239000 25555000 30116000 24930000 51864000 54777000 48591000 43479000 2 2 2 2 2 2 2 2 2 2 2 684680000 0 684680000 14270 2918;2621 13067 74888 90403;90404 90404 2 NGIHDLDNISFPK Unmodified 1468.731 0.73104237 1113 P49721 PSMB2 Proteasome subunit beta type-2 yes yes 0 0 0 0 By MS/MS 6 0 1 1 55.299 55.388 3 3.8609E-05 16024 20211116_3445_TMUAki_TMT10x_S_F6 86.467 69.525 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14271 1113 13068 74889 90405 90405 1 NGLSLAALKK Unmodified 1013.6233 0.62332982 693 P16401 HIST1H1B Histone H1.5 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 1 2 50.969 50.798 3 6.0309E-09 17458 20211116_3441_TMUAki_TMT10x_S_F3 125.97 75.93 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14272 693 13069 74890;74891;74892 90406;90407;90408 90407 3 NGMVLKPHFHK Oxidation (M) 1322.6918 0.69176051 813 P26373;P26373-2 RPL13 60S ribosomal protein L13 yes no 0 0 1 1 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 32.901 32.716 4;5 0.00054271 10069 20211116_3441_TMUAki_TMT10x_S_F3 82.171 62.9 3381500 5648000 94459 5249000 6920400 6111500 4486400 3826300 4047300 3341600 5019400 3149300 5268700 417950 5395900 6580200 6121400 4664400 3991100 4171200 3283600 4812000 5 5 5 5 5 5 5 5 5 5 5 2474200 4100500 75032 3858400 5971200 5286900 3452800 2828500 2926300 2493200 3648600 2304300 3825300 324030 3974700 5666700 5242600 3617700 2989900 3025700 2448800 3497300 3 3 3 3 3 3 3 3 3 3 3 907360 1547500 19427 1390600 949280 824630 1033600 997780 1121000 848470 1370800 844990 1443400 93919 1421200 913510 878880 1046700 1001300 1145500 834810 1314700 2 2 2 2 2 2 2 2 2 2 2 197260000 142020000 55240000 14273 813 13070 74893;74894;74895;74896;74897 90409;90410;90411;90412;90413 90412 967 5 NGNLPEFGDAISTASK Unmodified 1619.7791 0.77911477 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 59.237 59.143 3 0.049419 18603 20211116_3442_TMUAki_TMT10x_S_F4 40.856 23.055 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14274 3293 13071 74898 90414 90414 1 NGPALQEAYVR Unmodified 1216.62 0.62003536 3142 Q9UJU6;Q9UJU6-2;Q9UJU6-3;Q9UJU6-6 DBNL Drebrin-like protein yes no 0 0 0 0 By MS/MS 4 0 1 1 38.26 38.302 2 3.8196E-07 9694 20211116_3431_TMUAki_TMT10x_P_F4 112.95 93.968 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14275 3142 13072 74899 90415 90415 1 NGPLEVAGAAVSAGHGLPAK Unmodified 1814.9639 0.96389585 327 O75367;O75367-2;O75367-3 H2AFY Core histone macro-H2A.1 yes no 0 0 0 0 By MS/MS By MS/MS 5.2 3.06 1 1 1 2 2 3 55.209 55.476 3 1.2445E-41 15827 20211116_3447_TMUAki_TMT10x_S_F8 206.64 189.76 8965900 15791000 60359 15972000 11933000 19644000 10877000 14229000 13625000 13378000 13474000 8348000 14736000 768210 16336000 11414000 19664000 11173000 14714000 13736000 13101000 13002000 5 5 3 5 5 5 5 5 5 5 5 5818500 9564400 16938 10035000 8236900 15690000 7886200 9104800 8452100 8328400 8591200 5417100 8926400 459110 10289000 7885400 15487000 8035200 9566200 8578700 8166000 8283300 3 3 1 3 3 3 3 3 3 3 3 3147400 6226900 43422 5936400 3696000 3954600 2990600 5123700 5173000 5049800 4882400 2930900 5809300 309090 6047000 3528800 4177200 3138000 5148200 5156900 4934900 4718800 2 2 2 2 2 2 2 2 2 2 2 1306300000 896430000 409900000 14276 327 13073 74900;74901;74902;74903;74904 90416;90417;90418;90419;90420;90421;90422 90421 7 NGQDLGVAFK Unmodified 1047.5349 0.53490874 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 By MS/MS By MS/MS 4.86 0.833 3 2 2 3 4 49.348 49.502 2;3 3.6528E-08 13603 20211116_3445_TMUAki_TMT10x_S_F6 160.75 128.14 21771000 34626000 230630 38792000 38561000 33867000 25269000 32760000 35973000 27306000 36010000 20271000 32325000 2124500 39206000 36646000 34781000 26658000 33201000 36129000 26893000 34737000 6 6 4 6 6 6 6 6 6 6 6 8133300 12483000 39959 13934000 25494000 22128000 11780000 13553000 14557000 10786000 13424000 7572400 11654000 853210 14235000 24096000 21845000 12752000 14130000 14647000 10648000 12984000 2 2 1 2 2 2 2 2 2 2 2 13637000 22143000 190680 24858000 13067000 11739000 13489000 19207000 21416000 16520000 22587000 12699000 20672000 1271300 24971000 12550000 12936000 13906000 19071000 21482000 16245000 21752000 4 4 3 4 4 4 4 4 4 4 4 1699200000 879050000 820180000 14277 1474 13074 74905;74906;74907;74908;74909;74910;74911 90423;90424;90425;90426;90427;90428 90428 6 NGQLAASVETAGDSELFLMK Oxidation (M) 2096.0096 0.0095849934 1859 Q16658 FSCN1 Fascin yes yes 0 0 1 0 By MS/MS By MS/MS 3.8 0.748 2 2 1 3 2 71.132 71 3 6.6774E-10 23409 20211116_3442_TMUAki_TMT10x_S_F4 119.62 108.56 26429000 46227000 530460 38642000 30623000 47614000 32684000 34567000 31733000 33941000 36509000 24611000 43106000 2663700 40091000 29442000 47659000 33015000 35785000 32494000 33175000 35071000 13 13 9 13 13 13 13 13 13 13 13 14595000 25380000 244910 21120000 14319000 31706000 17053000 19905000 17886000 18887000 19747000 13590000 23666000 1354200 22006000 13808000 31381000 17181000 20803000 18225000 18488000 18992000 7 7 4 7 7 7 7 7 7 7 7 11834000 20847000 285550 17522000 16305000 15908000 15631000 14662000 13847000 15054000 16761000 11021000 19440000 1309500 18086000 15634000 16278000 15835000 14982000 14269000 14687000 16079000 6 6 5 6 6 6 6 6 6 6 6 4006300000 2578000000 1428200000 14278 1859 13075 74912;74913;74914;74915;74916 90429;90430;90431;90432;90433;90434;90435;90436;90437;90438;90439;90440;90441 90439 2475 13 NGQTREHALLAYTLGVK Unmodified 1870.0061 0.006095016 1416;1520 P68104;Q5VTE0;Q05639 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2 no no 0 0 0 1 By MS/MS 2 0 1 1 49.093 48.821 4 0.0046941 15139 20211116_3429_TMUAki_TMT10x_P_F2 59.872 41.039 2155500 3411400 6388.2 3445000 4038200 6404100 3298200 6221300 4588000 3818800 3670600 2007000 3183300 211030 3556300 3853800 6337400 3424100 6262700 4578500 3828600 3569300 1 1 1 1 1 1 1 1 1 1 1 2155500 3411400 6388.2 3445000 4038200 6404100 3298200 6221300 4588000 3818800 3670600 2007000 3183300 211030 3556300 3853800 6337400 3424100 6262700 4578500 3828600 3569300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 366410000 366410000 0 14279 1416;1520 13076 74917 90442 90442 1 NGQYAEASALYGR Unmodified 1398.6528 0.65279205 1829 Q15785 TOMM34 Mitochondrial import receptor subunit TOM34 yes yes 0 0 0 0 By MS/MS 4 0 2 2 39.847 40.045 2 1.5564E-14 10805 20211116_3442_TMUAki_TMT10x_S_F4 171.09 147.95 1006900 1548700 0 2304900 686660 654520 598520 1785300 2244600 1344100 1938900 937450 1447900 65085 2273300 655280 793990 662670 1744900 2200600 1330900 1879900 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1006900 1548700 0 2304900 686660 654520 598520 1785300 2244600 1344100 1938900 937450 1447900 65085 2273300 655280 793990 662670 1744900 2200600 1330900 1879900 2 2 0 2 2 2 2 2 2 2 2 75733000 0 75733000 14280 1829 13077 74918;74919 90443;90444;90445 90444 3 NGRVEIIANDQGNR Unmodified 1554.7863 0.78626584 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 1 By MS/MS By MS/MS 3 1.41 2 1 1 3 1 5 3 30.6 30.526 2;3 4.9639E-52 6602 20211116_3431_TMUAki_TMT10x_P_F4 269.44 218 3543500 5510400 10398 4700200 4788100 5097400 3970400 3951900 3853200 3386600 4726300 3299100 5138800 288310 4858200 4569000 5142600 4066500 4058900 3956100 3330800 4532300 6 6 2 6 6 6 6 6 6 6 6 2730000 4149400 8587.9 3589300 3645700 4171900 2879900 2980400 2881000 2498200 3506600 2541800 3869700 218330 3710000 3475000 4187300 2961300 3075900 2953000 2459700 3363300 4 4 1 4 4 4 4 4 4 4 4 813440 1361000 1810 1110900 1142500 925470 1090500 971530 972230 888410 1219700 757380 1269000 69978 1148200 1094000 955280 1105200 982970 1003000 871090 1168900 2 2 1 2 2 2 2 2 2 2 2 892870000 620380000 272490000 14281 614 13078 74920;74921;74922;74923;74924;74925;74926;74927 90446;90447;90448;90449;90450;90451;90452;90453 90449 8 NGSEADIDEGLYSR Unmodified 1524.6692 0.66922997 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 41.884 41.794 2 7.1239E-85 10745 20211116_3428_TMUAki_TMT10x_P_F1 346.78 298.93 545360 848630 2275.1 1449800 1790200 1394400 782000 1059700 1416900 693730 1239000 507760 794110 60014 1435700 1691000 1416500 865590 1083400 1407400 692610 1200800 2 2 1 2 2 2 2 2 2 2 2 329360 512220 2275.1 834570 1632500 1258300 627200 590160 764550 407410 688880 306680 479160 47678 834970 1540200 1240700 693020 628280 769110 405430 666880 1 1 1 1 1 1 1 1 1 1 1 216000 336400 0 615200 157690 136150 154800 469530 652380 286320 550150 201080 314940 12336 600750 150820 175740 172570 455070 638290 287180 533870 1 1 0 1 1 1 1 1 1 1 1 110150000 77809000 32342000 14282 769 13079 74928;74929;74930 90454;90455;90456 90454 3 NGTLPWLRPDSK Unmodified 1382.7306 0.73064844 885 P31153;P31153-2 MAT2A S-adenosylmethionine synthase isoform type-2 yes no 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 51.684 51.555 3 0.001747 16242 20211116_3429_TMUAki_TMT10x_P_F2 74.587 50.205 6022000 9338500 73150 10822000 14961000 13080000 10366000 5666200 5508400 5605000 8600600 5607600 8719400 680730 10969000 14233000 13019000 10604000 6133300 5926100 5476700 8201000 2 2 1 2 2 2 2 2 2 2 2 6022000 9338500 73150 10822000 14961000 13080000 10366000 5666200 5508400 5605000 8600600 5607600 8719400 680730 10969000 14233000 13019000 10604000 6133300 5926100 5476700 8201000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 405050000 405050000 0 14283 885 13080 74931;74932 90457;90458 90458 2 NGVMPSHFSR Oxidation (M) 1146.524 0.52402648 974 P39019 RPS19 40S ribosomal protein S19 yes yes 0 0 1 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 26.881 26.616 3 0.023629 6015 20211116_3429_TMUAki_TMT10x_P_F2 52.705 41.541 229680 342830 5808.2 287980 233170 275310 235820 204360 215970 188650 267170 213890 319700 23697 297470 223940 279650 238450 210890 222400 184900 256150 3 3 2 3 3 3 3 3 3 3 3 43882 67044 0 57861 50869 66995 38471 40714 51874 34542 42225 40852 62525 2928.8 59813 48412 67096 40086 42536 51844 33989 41032 1 1 0 1 1 1 1 1 1 1 1 185800 275790 5808.2 230120 182300 208310 197350 163640 164090 154110 224950 173040 257170 20768 237660 175530 212560 198360 168350 170550 150910 215120 2 2 2 2 2 2 2 2 2 2 2 4823900 2633200 2190700 14284 974 13081 74933;74934 90459;90460;90461 90459 1248 3 NGVQAMVEFDSVQSAQR Oxidation (M) 1880.8687 0.86867484 677 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 1 0 By MS/MS By MS/MS 3.07 1.03 1 3 5 4 1 7 7 45.169 45.116 2;3 1.2514E-46 13941 20211116_3430_TMUAki_TMT10x_P_F3 240.8 212.63 7996900 12984000 64830 13619000 11907000 14469000 9176400 13657000 14077000 12140000 12712000 7445300 12118000 641920 13862000 11343000 14669000 9602500 13881000 14058000 11919000 12305000 13 13 8 13 13 13 13 13 13 13 13 4113800 6388300 16528 6551300 7998900 10469000 5656800 7056100 7085800 6294300 6224900 3829700 5961600 323160 6730400 7606200 10347000 5904600 7323600 7115500 6178700 6031600 6 6 3 6 6 6 6 6 6 6 6 3883100 6596000 48302 7068100 3907700 3999900 3519600 6600500 6991500 5846000 6487400 3615500 6156600 318770 7131400 3736900 4322500 3697900 6557100 6942800 5740600 6273800 7 7 5 7 7 7 7 7 7 7 7 5120800000 2298200000 2822600000 14285 677 13082 74935;74936;74937;74938;74939;74940;74941;74942;74943;74944;74945;74946;74947;74948 90462;90463;90464;90465;90466;90467;90468;90469;90470;90471;90472;90473;90474;90475;90476;90477 90466 753 16 NGVQAMVEFDSVQSAQR Unmodified 1864.8738 0.87376021 677 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 0 By MS/MS By MS/MS 4 0.632 1 3 1 3 2 56.924 56.927 3 1.4426E-21 17664 20211116_3442_TMUAki_TMT10x_S_F4 164.01 145.18 17108000 28016000 248420 29172000 24473000 31892000 21658000 27593000 24746000 23870000 25659000 15930000 26146000 1665600 29720000 23404000 32225000 22212000 28160000 25072000 23466000 24724000 6 6 3 6 6 6 6 6 6 6 6 11462000 17445000 143360 18405000 18048000 25836000 16196000 17046000 15461000 15029000 16367000 10673000 16281000 1088800 18820000 17262000 25664000 16503000 17714000 15793000 14761000 15761000 4 4 1 4 4 4 4 4 4 4 4 5645400 10571000 105060 10767000 6424300 6056300 5461900 10547000 9285800 8841100 9291400 5257300 9864800 576870 10900000 6142100 6561300 5708900 10446000 9279500 8705000 8962900 2 2 2 2 2 2 2 2 2 2 2 2143000000 686660000 1456300000 14286 677 13082 74949;74950;74951;74952;74953 90478;90479;90480;90481;90482;90483;90484 90483 7 NGYELSPTAAANFTR Unmodified 1610.7689 0.76888444 1113 P49721 PSMB2 Proteasome subunit beta type-2 yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 52.039 52.171 2 3.5575E-33 14716 20211116_3445_TMUAki_TMT10x_S_F6 222.55 207.86 2014000 3467700 0 3643600 1462500 1677400 1282600 2098900 2012800 2129400 2754100 1875200 3236400 155400 3675300 1397500 1839600 1333000 2113700 2042000 2078500 2633800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2014000 3467700 0 3643600 1462500 1677400 1282600 2098900 2012800 2129400 2754100 1875200 3236400 155400 3675300 1397500 1839600 1333000 2113700 2042000 2078500 2633800 1 1 0 1 1 1 1 1 1 1 1 101210000 0 101210000 14287 1113 13083 74954;74955 90485;90486 90486 2 NGYGFINR Unmodified 939.45626 0.45626449 1410;699 P67809;Q9Y2T7;P16989;P16989-3;P16989-2 YBX1;YBX2;YBX3 Nuclease-sensitive element-binding protein 1;Y-box-binding protein 2;Y-box-binding protein 3 no no 0 0 0 0 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 37.314 37.647 2 0.0019556 9720 20211116_3446_TMUAki_TMT10x_S_F7 115.46 90.565 4478800 6970900 13756 7753600 10734000 8562800 5090900 6376000 7629800 5127200 7441700 4170100 6507500 437570 7866700 10149000 8624100 5537600 6555700 7644200 5059000 7184600 10 10 4 10 10 10 10 10 10 10 10 2745000 4236200 10326 4631300 9415100 7294700 3686900 3865700 4672500 3150800 4515200 2555800 3954300 314690 4736600 8883300 7190000 4069800 4082100 4704800 3106700 4360500 4 4 2 4 4 4 4 4 4 4 4 1733800 2734700 3429.2 3122300 1318800 1268100 1404000 2510300 2957300 1976400 2926500 1614200 2553200 122880 3130100 1265600 1434100 1467800 2473600 2939400 1952300 2824100 6 6 2 6 6 6 6 6 6 6 6 488000000 336190000 151810000 14288 1410;699 13084 74956;74957;74958;74959;74960;74961 90487;90488;90489;90490;90491;90492;90493;90494;90495;90496 90493 10 NGYGFVEFEDSRDADDAVYELNGK Unmodified 2709.1831 0.18306892 1613 Q13247;Q13247-3;Q13247-2 SRSF6 Serine/arginine-rich splicing factor 6 yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.764 4 1 1 3 3 71.093 70.932 3;4 8.1116E-38 22573 20211116_3428_TMUAki_TMT10x_P_F1 188.48 181.2 29130000 53505000 668170 42729000 30620000 51866000 38418000 34658000 36610000 35930000 40124000 27128000 49886000 3053100 44488000 29596000 51887000 38505000 36144000 37448000 35038000 38598000 8 8 7 8 8 8 8 8 8 8 8 20422000 37657000 497450 29673000 19496000 40851000 26510000 24513000 25651000 25042000 27754000 19018000 35108000 2138100 31002000 18900000 40560000 26497000 25763000 26208000 24435000 26708000 5 5 4 5 5 5 5 5 5 5 5 8708700 15848000 170720 13056000 11124000 11014000 11908000 10145000 10958000 10888000 12370000 8109900 14777000 914940 13486000 10696000 11327000 12009000 10381000 11240000 10603000 11890000 3 3 3 3 3 3 3 3 3 3 3 4333700000 2583400000 1750300000 14289 1613 13085 74962;74963;74964;74965;74966;74967 90497;90498;90499;90500;90501;90502;90503;90504 90499 8 NHDEESLECLCR Unmodified 1560.6297 0.62969012 1511;216 O43432;O43432-4;O43432-3;Q04637;Q04637-3;Q04637-8;Q04637-5;Q04637-4;Q04637-9;Q04637-6;Q04637-7 EIF4G3;EIF4G1 Eukaryotic translation initiation factor 4 gamma 3;Eukaryotic translation initiation factor 4 gamma 1 no no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 33.764 33.693 3 2.4217E-24 7446 20211116_3428_TMUAki_TMT10x_P_F1 243.4 187.19 734120 1161700 18671 1549200 2413300 1565100 926170 899620 978210 710190 1194800 683610 1085500 93947 1553300 2277200 1578400 1018800 942580 1000600 701410 1145900 3 3 2 3 3 3 3 3 3 3 3 567020 888390 7774.9 1153800 2252800 1445100 775370 672290 754430 527570 914750 527950 829950 70031 1162700 2123000 1436900 863090 718210 774110 521210 877470 2 2 1 2 2 2 2 2 2 2 2 167100 273330 10896 395370 160460 119930 150800 227330 223780 182620 280030 155670 255500 23916 390600 154280 141580 155730 224370 226460 180200 268390 1 1 1 1 1 1 1 1 1 1 1 161830000 137840000 23990000 14290 216;1511 13086 74968;74969;74970 90505;90506;90507 90505 3 NHDHQEIAVPVANLK Unmodified 1683.8693 0.86926718 349 O75607 NPM3 Nucleoplasmin-3 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 3 1 38.743 38.787 4 3.1531E-10 10286 20211116_3433_TMUAki_TMT10x_P_F5 137.8 117.96 3780500 5916200 75421 6799500 8574600 7477000 4676100 5597700 5777400 4560900 6110000 3520600 5523800 447500 6884300 8128000 7533100 4981100 5755100 5841100 4497100 5883800 6 6 5 6 6 6 6 6 6 6 6 2658700 4082800 56422 4711900 7512000 6502700 3706900 3853300 3970000 3246900 4122000 2475900 3812000 340980 4789200 7110600 6454500 3967200 4033300 4032700 3196100 3971600 4 4 4 4 4 4 4 4 4 4 4 1121800 1833400 18999 2087600 1062600 974320 969170 1744400 1807400 1314000 1988000 1044700 1711700 106530 2095100 1017400 1078500 1013900 1721800 1808400 1301000 1912200 2 2 1 2 2 2 2 2 2 2 2 530610000 373680000 156930000 14291 349 13087 74971;74972;74973;74974 90508;90509;90510;90511;90512;90513 90509 6 NHEAQIQDMR Unmodified 1240.5619 0.56186855 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS 3 0 1 1 27.716 27.432 3 0.00066815 8079 20211116_3441_TMUAki_TMT10x_S_F3 84.31 62.847 43195 65409 0 66822 51601 37736 42181 38330 43128 37942 34722 40209 61039 2500.5 67634 49162 40250 43308 38929 43536 37072 33755 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 43195 65409 0 66822 51601 37736 42181 38330 43128 37942 34722 40209 61039 2500.5 67634 49162 40250 43308 38929 43536 37072 33755 1 1 0 1 1 1 1 1 1 1 1 3994200 0 3994200 14292 935 13088 74975 90514 90514 1 NHFAEIETELQAELVR Unmodified 1897.9534 0.95339074 416 O95239;O95239-2 KIF4A Chromosome-associated kinesin KIF4A yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 71.173 71.099 3 0.00063283 24660 20211116_3439_TMUAki_TMT10x_S_F1 64.298 50.392 16434000 26209000 72452 25676000 17192000 23378000 19199000 13673000 13254000 13469000 19249000 15302000 24454000 1438500 26197000 16539000 23740000 19186000 14385000 13956000 13163000 18383000 3 3 2 3 3 3 3 3 3 3 3 12449000 19640000 10185 18824000 13031000 20346000 15374000 10397000 10250000 10281000 14657000 11591000 18324000 1047700 19284000 12554000 20410000 15313000 11069000 10808000 10046000 14002000 2 2 1 2 2 2 2 2 2 2 2 3984800 6569100 62267 6852300 4160400 3032100 3825500 3276000 3004300 3187200 4592500 3710700 6130700 390850 6913300 3984600 3330100 3872400 3315900 3148600 3116500 4381000 1 1 1 1 1 1 1 1 1 1 1 775580000 448670000 326910000 14293 416 13089 74976;74977 90515;90516;90517 90517 3 NHFYQFGEIR Unmodified 1309.6204 0.62036971 2984 Q9NW64;Q9NW64-2 RBM22 Pre-mRNA-splicing factor RBM22 yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 42.119 42.479 3 0.00016845 12364 20211116_3435_TMUAki_TMT10x_P_F7 108.47 89.376 2866900 4645200 62074 5748300 6959800 6213700 4110400 4102100 4160800 3627400 4797400 2669700 4338600 338950 5793200 6604600 6253900 4319900 4263100 4253300 3562300 4608200 5 5 4 5 5 5 5 5 5 5 5 2232900 3550000 53023 4348500 6319400 5764900 3552600 3246600 3275600 2758100 3778900 2079400 3315500 291770 4400900 5993000 5728900 3739600 3413400 3362400 2713800 3629800 3 3 3 3 3 3 3 3 3 3 3 634050 1095200 9051.6 1399800 640460 448840 557850 855460 885170 869280 1018500 590320 1023100 47182 1392300 611670 525050 580310 849670 890920 848420 978390 2 2 1 2 2 2 2 2 2 2 2 628060000 475440000 152620000 14294 2984 13090 74978;74979;74980 90518;90519;90520;90521;90522 90520 5 NHIENQDECVLNVISHAR Unmodified 2147.0178 0.017798689 2734 Q9BZE1 MRPL37 39S ribosomal protein L37, mitochondrial yes yes 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 46.425 46.348 4 3.7411E-08 15642 20211116_3441_TMUAki_TMT10x_S_F3 108.71 97.451 1116800 1889500 11322 2124400 1013700 1047000 895860 1702800 1478800 1421600 1776900 1039800 1764000 88460 2134500 968840 1147800 932920 1689800 1489500 1400000 1704800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1116800 1889500 11322 2124400 1013700 1047000 895860 1702800 1478800 1421600 1776900 1039800 1764000 88460 2134500 968840 1147800 932920 1689800 1489500 1400000 1704800 2 2 1 2 2 2 2 2 2 2 2 344700000 0 344700000 14295 2734 13091 74981;74982 90523;90524 90523 2 NHIILQENAQHATR Unmodified 1643.8492 0.84920044 1966 Q69YN2;Q69YN2-3 CWF19L1 CWF19-like protein 1 yes no 0 0 0 0 By MS/MS 4.5 0.5 2 2 4 28.01 27.998 3;4 1.6723E-06 5928 20211116_3433_TMUAki_TMT10x_P_F5 113.53 104.57 203860 287200 6976.4 229430 223950 344560 177740 221230 189680 177610 229310 189870 267770 23685 239860 214000 341140 183070 229850 193850 175260 219980 2 2 2 2 2 2 2 2 2 2 2 203860 287200 6976.4 229430 223950 344560 177740 221230 189680 177610 229310 189870 267770 23685 239860 214000 341140 183070 229850 193850 175260 219980 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21658000 21658000 0 14296 1966 13092 74983;74984;74985;74986 90525;90526 90525 2 NHIPITEQGDAPR Unmodified 1446.7215 0.72154031 2321 Q8WXD5 GEMIN6 Gem-associated protein 6 yes yes 0 0 0 0 By MS/MS 3 0 1 1 30.97 30.717 3 9.219E-06 9336 20211116_3441_TMUAki_TMT10x_S_F3 91.28 64.607 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14297 2321 13093 74987 90527 90527 1 NHLLPDIVTCVQSSR Unmodified 1737.8832 0.88320269 2649 Q9BSD7 NTPCR Cancer-related nucleoside-triphosphatase yes yes 0 0 0 0 By MS/MS 8 0 1 1 54.609 54.541 3 0.00013596 15461 20211116_3447_TMUAki_TMT10x_S_F8 79.346 57.789 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14298 2649 13094 74988 90528 90528 1 NHMHFGAITCAMGIR 2 Oxidation (M) 1746.7752 0.77524892 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 2 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 31.789 31.816 4 0.0049585 6901 20211116_3440_TMUAki_TMT10x_S_F2 58.831 46.471 1415200 2376400 9497.7 2543200 1753900 1764700 1703400 1576300 1377100 1482000 1984100 1317800 2218100 127010 2571100 1681000 1841600 1720400 1609300 1436800 1451300 1895200 4 4 1 4 4 4 4 4 4 4 4 127170 209060 0 184490 241790 267470 166830 124960 142780 112200 158690 118400 194980 11334 191180 229900 264160 172400 133860 146870 110110 152590 1 1 0 1 1 1 1 1 1 1 1 1288100 2167400 9497.7 2358700 1512100 1497300 1536600 1451300 1234300 1369800 1825400 1199400 2023100 115680 2379900 1451100 1577400 1548000 1475500 1289900 1341200 1742600 3 3 1 3 3 3 3 3 3 3 3 110630000 69734000 40895000 14299 3317 13095 74989;74990;74991 90529;90530;90531 90530 3280;3281 3 NHMHFGAITCAMGIR Oxidation (M) 1730.7803 0.7803343 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 1 0 By MS/MS By MS/MS 2 0.816 2 2 2 2 4 36.841 36.727 4 0.00054403 9801 20211116_3429_TMUAki_TMT10x_P_F2 74.649 57.43 3021900 4573900 70735 5524300 3494900 3437100 2990200 3008800 2879300 2632800 3664700 2814200 4271500 320390 5537400 3342500 3620600 3056000 3069500 2961900 2586800 3510900 6 6 5 6 6 6 6 6 6 6 6 742460 1064800 25752 1317400 1524500 1575700 910850 787410 783840 632170 954880 691500 994520 96508 1329900 1447900 1571500 952070 835720 809050 623810 915840 2 2 2 2 2 2 2 2 2 2 2 2279500 3509100 44983 4207000 1970300 1861500 2079400 2221400 2095400 2000600 2709900 2122700 3277000 223880 4207400 1894500 2049100 2104000 2233800 2152800 1963000 2595100 4 4 3 4 4 4 4 4 4 4 4 530700000 248640000 282060000 14300 3317 13095 74992;74993;74994;74995;74996;74997 90532;90533;90534;90535;90536 90533 3280;3281 5 NHPGLLLMDTTFR Oxidation (M) 1529.766 0.76604767 628 P11498 PC Pyruvate carboxylase, mitochondrial yes yes 0 0 1 0 By MS/MS 7 0 1 1 46.046 46.551 3 0.00040377 14424 20211116_3446_TMUAki_TMT10x_S_F7 76.868 58.088 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14301 628 13096 74998 90537 90537 649 1 NHPMTPEAVK Oxidation (M) 1138.5441 0.54409322 1161 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 1 0 By MS/MS 4 0 1 1 28.037 28.086 3 0.00045999 5616 20211116_3431_TMUAki_TMT10x_P_F4 92.611 76.72 145490 238530 40.067 212350 217410 248230 156820 112040 128510 117250 181640 135460 222470 13107 219020 206940 247600 161360 120950 133860 114300 173580 1 1 1 1 1 1 1 1 1 1 1 145490 238530 40.067 212350 217410 248230 156820 112040 128510 117250 181640 135460 222470 13107 219020 206940 247600 161360 120950 133860 114300 173580 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7017400 7017400 0 14302 1161 13097 74999 90538 90538 1545 1 NHQEEDLTEFLCANHVLK Unmodified 2196.027 0.026966392 2654 Q9BT09 CNPY3 Protein canopy homolog 3 yes yes 0 0 0 0 By MS/MS By MS/MS 3.75 0.829 2 1 1 1 3 62.28 62.086 4 1.8502E-12 21091 20211116_3430_TMUAki_TMT10x_P_F3 136.34 126.59 17321000 28658000 233970 31126000 18645000 18734000 17039000 21450000 21519000 19002000 24223000 16129000 26750000 1637100 31394000 17849000 19910000 17506000 21599000 21792000 18659000 23283000 5 5 3 5 5 5 5 5 5 5 5 2915500 4785100 0 5252200 4294700 5646800 3886000 2672600 2803900 2383500 3577400 2714400 4466800 235330 5331100 4106000 5661400 3929700 2858800 2927300 2339800 3427000 1 1 0 1 1 1 1 1 1 1 1 14406000 23873000 233970 25874000 14350000 13087000 13153000 18778000 18715000 16618000 20645000 13415000 22284000 1401800 26063000 13743000 14249000 13577000 18740000 18865000 16319000 19856000 4 4 3 4 4 4 4 4 4 4 4 1421000000 291240000 1129800000 14303 2654 13098 75000;75001;75002;75003 90539;90540;90541;90542;90543 90539 5 NHQGPLPPVPLHLR Unmodified 1573.8841 0.88412939 2549 Q96S55;Q96S55-2;Q96S55-4;Q96S55-3 WRNIP1 ATPase WRNIP1 yes no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 39.58 39.562 4 0.00010218 9932 20211116_3440_TMUAki_TMT10x_S_F2 90.793 76.119 5980400 9109000 50745 10040000 7823800 7790900 6883600 4815500 4958200 4661300 7051400 5568700 8503200 568930 10143000 7481200 8008700 6971900 5041600 5202700 4558800 6737400 5 5 5 5 5 5 5 5 5 5 5 4223500 6275600 15276 7107400 6236000 6084800 4824800 2847400 2982900 2893300 4739200 3932600 5858900 392580 7176600 5944800 6189100 4910700 3059800 3177500 2823900 4517400 2 2 2 2 2 2 2 2 2 2 2 1756900 2833400 35469 2932700 1587800 1706100 2058800 1968100 1975300 1768000 2312200 1636100 2644200 176350 2966500 1536400 1819600 2061100 1981800 2025200 1734900 2220100 3 3 3 3 3 3 3 3 3 3 3 166130000 103130000 62996000 14304 2549 13099 75004;75005;75006 90544;90545;90546;90547;90548 90547 5 NHSIILSAPNPEGK Unmodified 1475.7732 0.77324153 903 P32856;P32856-3;P32856-2 STX2 Syntaxin-2 yes no 0 0 0 0 By MS/MS 6 0 1 1 39.39 39.554 3 0.00034423 9633 20211116_3445_TMUAki_TMT10x_S_F6 69.878 48.649 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14305 903 13100 75007 90549 90549 1 NHTLALTETGSVFAFGENK Unmodified 2035.0011 0.0010692176 3056 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 0 By MS/MS By MS/MS 6.15 1.29 2 2 3 4 2 5 8 61.782 62.001 2;3;4 1.0755E-90 20704 20211116_3446_TMUAki_TMT10x_S_F7 330.26 293.96 51545000 90876000 254280 79903000 60942000 92908000 64944000 72011000 64019000 65506000 78068000 47991000 84756000 3259800 82484000 58512000 93377000 65637000 74076000 65667000 64245000 74874000 14 14 5 14 14 14 14 14 14 14 14 27424000 48026000 24737 42716000 30054000 65294000 36941000 37400000 34117000 35465000 41274000 25532000 44794000 1166500 44290000 28969000 64497000 37023000 39376000 35086000 34717000 39594000 7 7 1 7 7 7 7 7 7 7 7 24121000 42850000 229540 37188000 30888000 27615000 28003000 34611000 29902000 30041000 36793000 22459000 39962000 2093300 38194000 29544000 28880000 28614000 34701000 30581000 29528000 35280000 7 7 4 7 7 7 7 7 7 7 7 20734000000 9929600000 10804000000 14306 3056 13101 75008;75009;75010;75011;75012;75013;75014;75015;75016;75017;75018;75019;75020 90550;90551;90552;90553;90554;90555;90556;90557;90558;90559;90560;90561;90562;90563;90564 90563 15 NHVCQYYIYELQK Unmodified 1756.8243 0.82429083 2946 Q9NTJ3;Q9NTJ3-2 SMC4 Structural maintenance of chromosomes protein 4 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 3 1 2 50.767 51.349 3 0.00060666 16429 20211116_3446_TMUAki_TMT10x_S_F7 71.548 53.184 3999700 7064400 51386 7079900 8225100 9722400 5549900 5920300 5862200 5547800 5916800 3724500 6591900 438670 7261100 7822400 9656100 5779100 6200100 5952100 5433600 5706000 2 2 2 2 2 2 2 2 2 2 2 3999700 7064400 51386 7079900 8225100 9722400 5549900 5920300 5862200 5547800 5916800 3724500 6591900 438670 7261100 7822400 9656100 5779100 6200100 5952100 5433600 5706000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 734050000 524260000 209790000 14307 2946 13102 75021;75022;75023 90565;90566;90567 90567 3 NIAFFSTNCVEGTAR Unmodified 1685.7832 0.78315429 497 P05023;P05023-3;P05023-4;P05023-2 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 4 2 2 4 59.01 59.423 2;3 2.4085E-44 19118 20211116_3435_TMUAki_TMT10x_P_F7 275.44 250.6 27727000 49052000 616030 47517000 33314000 41267000 32549000 36661000 33307000 33083000 39205000 25821000 45765000 2853400 48491000 31955000 42322000 33079000 37400000 34060000 32458000 37637000 9 9 6 9 9 9 9 9 9 9 9 9323200 16390000 222590 15982000 12013000 21189000 12643000 12409000 10754000 11317000 12696000 8682100 15292000 974450 16411000 11545000 21067000 12733000 13027000 11092000 11098000 12187000 3 3 2 3 3 3 3 3 3 3 3 18404000 32662000 393430 31536000 21301000 20078000 19906000 24252000 22553000 21766000 26509000 17139000 30473000 1878900 32080000 20410000 21255000 20346000 24373000 22968000 21360000 25450000 6 6 4 6 6 6 6 6 6 6 6 4348100000 1787300000 2560800000 14308 497 13103 75024;75025;75026;75027;75028;75029 90568;90569;90570;90571;90572;90573;90574;90575;90576 90569 9 NIAIQSQFTR Unmodified 1176.6251 0.62512073 641 P12270;P12270-2 TPR Nucleoprotein TPR yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 44.669 44.648 2 7.5824E-19 11865 20211116_3428_TMUAki_TMT10x_P_F1 246.93 211.73 4597200 7789300 14187 7831900 7382400 7733000 5209000 7076700 7121000 5930800 7083800 4280200 7268400 391010 7985300 7022000 7869200 5456500 7193900 7159400 5839500 6834600 4 4 1 4 4 4 4 4 4 4 4 2502800 4042600 14187 4228200 5344800 5848300 3348700 3846600 3962600 3189400 3928600 2330300 3772900 250410 4324600 5074800 5813000 3520100 3992300 4003200 3142000 3790900 2 2 1 2 2 2 2 2 2 2 2 2094400 3746600 0 3603700 2037600 1884700 1860300 3230100 3158400 2741400 3155100 1949900 3495500 140600 3660800 1947200 2056200 1936400 3201600 3156200 2697600 3043700 2 2 0 2 2 2 2 2 2 2 2 621980000 356460000 265520000 14309 641 13104 75030;75031;75032;75033 90577;90578;90579;90580 90577 4 NIAPNISR Unmodified 883.48756 0.48756462 2715 Q9BXP5;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3 SRRT Serrate RNA effector molecule homolog yes no 0 0 0 0 By MS/MS 5 0 1 1 32.569 32.733 2 0.023612 6711 20211116_3444_TMUAki_TMT10x_S_F5 68.625 35.363 146780 260860 1740.5 264960 156730 121870 148050 133900 143560 127750 209430 136680 243430 13930 267880 150170 133250 150490 135350 148580 125020 199990 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 146780 260860 1740.5 264960 156730 121870 148050 133900 143560 127750 209430 136680 243430 13930 267880 150170 133250 150490 135350 148580 125020 199990 1 1 1 1 1 1 1 1 1 1 1 3189100 0 3189100 14310 2715 13105 75034 90581 90581 1 NIAVETDVR Unmodified 1015.5298 0.52982336 2690 Q9BVC5;Q9BVC5-2 C2orf49 Ashwin yes no 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 34.907 35 2 0.0042406 11603 20211116_3441_TMUAki_TMT10x_S_F3 76.572 68.417 313700 511150 0 489430 352360 272670 320830 327130 350340 311270 416610 292050 476880 21904 497590 336770 292380 328000 329380 357470 304660 399840 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 313700 511150 0 489430 352360 272670 320830 327130 350340 311270 416610 292050 476880 21904 497590 336770 292380 328000 329380 357470 304660 399840 1 1 0 1 1 1 1 1 1 1 1 15479000 0 15479000 14311 2690 13106 75035;75036 90582;90583 90583 2 NIAVGKDPLEGQR Unmodified 1395.747 0.74702678 66 O00170 AIP AH receptor-interacting protein yes yes 0 0 0 1 By MS/MS 6 0 1 1 41.576 41.617 3 0.012274 10075 20211116_3434_TMUAki_TMT10x_P_F6 61.649 44.709 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14312 66 13107 75037 90584 90584 1 NICFTVWDVGGQDK Unmodified 1637.7508 0.75079153 1453 P84085 ARF5 ADP-ribosylation factor 5 yes yes 0 0 0 0 By MS/MS 6 0 1 1 74.303 74.251 3 0.00013139 23400 20211116_3434_TMUAki_TMT10x_P_F6 80.632 68.005 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14313 1453 13108 75038 90585 90585 1 NICFTVWDVGGQDR Unmodified 1665.7569 0.75693954 715 P18085 ARF4 ADP-ribosylation factor 4 yes yes 0 0 0 0 By MS/MS 7 0 1 1 71.701 71.908 2 0.00044311 24871 20211116_3446_TMUAki_TMT10x_S_F7 79.492 62.261 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14314 715 13109 75039 90586 90586 1 NICQFLVEIGLAK Unmodified 1503.8119 0.81193523 1003 P41567 EIF1 Eukaryotic translation initiation factor 1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 81.548 81.52 3 0.00062895 29835 20211116_3441_TMUAki_TMT10x_S_F3 70.963 53.937 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14315 1003 13110 75040 90587 90587 1 NICQFLVEIGLAKDDQLK Unmodified 2103.1034 0.1034258 1003 P41567 EIF1 Eukaryotic translation initiation factor 1 yes yes 0 0 0 1 By matching By MS/MS 6 2.83 1 2 1 2 79.881 79.871 3;4 6.0348E-06 26453 20211116_3440_TMUAki_TMT10x_S_F2 92.264 81.605 4338400 7678900 184690 7031200 6356300 5608000 6570600 4488800 4723000 5198000 5868000 4040900 7162800 560080 7197400 6111300 5775700 6596400 4641700 4926400 5047400 5625200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4338400 7678900 184690 7031200 6356300 5608000 6570600 4488800 4723000 5198000 5868000 4040900 7162800 560080 7197400 6111300 5775700 6596400 4641700 4926400 5047400 5625200 2 2 2 2 2 2 2 2 2 2 2 1156400000 284690000 871660000 14316 1003 13111 75041;75042;75043 90588;90589 90588 2 NICQQVNIK Unmodified 1115.5757 0.5757277 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 41.581 42.029 2 4.2717E-14 12146 20211116_3446_TMUAki_TMT10x_S_F7 215.1 148.1 1108200 1707200 0 1795600 2098500 2204600 1293300 1168800 1149100 1106600 1498400 1031600 1593300 84640 1831700 1990500 2197400 1349500 1238800 1187700 1083300 1434600 1 1 0 1 1 1 1 1 1 1 1 1108200 1707200 0 1795600 2098500 2204600 1293300 1168800 1149100 1106600 1498400 1031600 1593300 84640 1831700 1990500 2197400 1349500 1238800 1187700 1083300 1434600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57375000 57375000 0 14317 1684 13112 75044;75045 90590;90591 90591 2 NIDDGTSDRPYSHALVAGIDR Unmodified 2271.088 0.087986745 1310 P61353 RPL27 60S ribosomal protein L27 yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.943 1 3 3 2 3 6 42.289 42.37 3;4 8.7406E-83 11632 20211116_3442_TMUAki_TMT10x_S_F4 282.37 259.5 9419900 15702000 68440 20871000 11410000 11167000 8373000 11963000 13444000 11638000 13979000 8771100 14671000 757860 20781000 10867000 11992000 8808900 12113000 13474000 11380000 13468000 10 10 6 10 10 10 10 10 10 10 10 2535900 4510400 95.833 5524100 6168800 5893700 3499300 3113900 3543600 2877400 3213200 2361100 4212400 249050 5569400 5847000 5918800 3690500 3299200 3591300 2819900 3109800 2 2 1 2 2 2 2 2 2 2 2 6883900 11192000 68344 15347000 5241700 5272900 4873600 8849000 9900300 8761000 10765000 6410000 10458000 508800 15212000 5019900 6073400 5118400 8814000 9882500 8560000 10358000 8 8 5 8 8 8 8 8 8 8 8 3563600000 2293200000 1270400000 14318 1310 13113 75046;75047;75048;75049;75050;75051;75052;75053;75054 90592;90593;90594;90595;90596;90597;90598;90599;90600;90601 90598 10 NIDDGTSDRPYSHALVAGIDRYPR Unmodified 2687.3052 0.30519016 1310 P61353 RPL27 60S ribosomal protein L27 yes yes 0 0 0 2 By MS/MS By MS/MS 5.65 1.46 1 4 5 4 3 3 10 10 42.547 42.682 3;4;5 4.7054E-141 11035 20211116_3447_TMUAki_TMT10x_S_F8 355.86 318.7 102670000 180840000 1988200 207100000 144040000 158570000 106280000 118840000 114150000 111970000 129510000 95601000 168840000 9033100 208700000 137240000 163640000 110020000 122630000 116330000 109640000 124460000 41 41 26 41 41 41 41 41 41 41 41 50438000 90602000 1105400 101490000 91555000 116000000 68091000 60629000 55595000 56655000 64205000 46970000 84582000 5059700 102990000 87256000 116040000 69908000 64319000 57411000 55496000 61670000 21 21 12 21 21 21 21 21 21 21 21 52228000 90233000 882790 105610000 52483000 42571000 38188000 58215000 58558000 55315000 65303000 48631000 84255000 3973400 105710000 49980000 47608000 40114000 58313000 58921000 54143000 62787000 20 20 14 20 20 20 20 20 20 20 20 52729000000 32819000000 19910000000 14319 1310 13114 75055;75056;75057;75058;75059;75060;75061;75062;75063;75064;75065;75066;75067;75068;75069;75070;75071;75072;75073;75074 90602;90603;90604;90605;90606;90607;90608;90609;90610;90611;90612;90613;90614;90615;90616;90617;90618;90619;90620;90621;90622;90623;90624;90625;90626;90627;90628;90629;90630;90631;90632;90633;90634;90635;90636;90637;90638;90639;90640;90641;90642 90642 41 NIDEHANEDVER Unmodified 1439.6277 0.62769951 1290 P61026 RAB10 Ras-related protein Rab-10 yes yes 0 0 0 0 By MS/MS By MS/MS 1.25 0.433 3 1 2 2 26.938 26.894 3 2.6581E-06 6157 20211116_3439_TMUAki_TMT10x_S_F1 113.8 102.59 136010 246920 1952 247180 221550 247730 190700 149360 170300 131460 223270 126650 230400 13245 252160 211710 250120 194420 156280 176020 129130 213740 3 3 1 3 3 3 3 3 3 3 3 97718 170970 1952 171140 162840 206200 129910 108540 113040 89476 151990 90996 159540 10346 175100 155400 205710 132970 114710 117120 88173 145410 2 2 1 2 2 2 2 2 2 2 2 38295 75942 0 76045 58711 41523 60789 40816 57262 41986 71280 35652 70862 2898.6 77055 56310 44415 61443 41570 58906 40957 68327 1 1 0 1 1 1 1 1 1 1 1 18166000 14417000 3749100 14320 1290 13115 75075;75076;75077;75078 90643;90644;90645;90646 90645 4 NIDINDVTPNCR Unmodified 1429.662 0.66197652 1337 P62195;P62195-2 PSMC5 26S protease regulatory subunit 8 yes no 0 0 0 0 By MS/MS 4 0 1 1 45.764 45.889 2 1.8901E-15 12722 20211116_3431_TMUAki_TMT10x_P_F4 169.52 95.054 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14321 1337 13116 75079 90647 90647 1 NIDNPALADIYTEHAHQVVVAK Unmodified 2417.2339 0.2339227 307 O75083 WDR1 WD repeat-containing protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 1.12 2 2 2 2 4 4 55.343 55.575 4 1.0492E-36 15715 20211116_3434_TMUAki_TMT10x_P_F6 198.9 178.28 92927000 163270000 1538300 169230000 143530000 181800000 117620000 137180000 122720000 117680000 140410000 86532000 152370000 9433400 172410000 137040000 183430000 120820000 141140000 125250000 115740000 134900000 18 18 12 18 18 18 18 18 18 18 18 54690000 91958000 1096200 97718000 101490000 142710000 81450000 76935000 71147000 64206000 78438000 50929000 85828000 5987900 99954000 96858000 141130000 83347000 81160000 73090000 63231000 75441000 10 10 8 10 10 10 10 10 10 10 10 38236000 71315000 442140 71510000 42041000 39093000 36172000 60243000 51568000 53477000 61967000 35604000 66545000 3445500 72453000 40178000 42301000 37475000 59981000 52157000 52507000 59456000 8 8 4 8 8 8 8 8 8 8 8 14578000000 6865400000 7712200000 14322 307 13117 75080;75081;75082;75083;75084;75085;75086;75087 90648;90649;90650;90651;90652;90653;90654;90655;90656;90657;90658;90659;90660;90661;90662;90663;90664;90665 90652 18 NIDPKPCTPR Unmodified 1196.5972 0.59719142 2447 Q96EP5;Q96EP5-2 DAZAP1 DAZ-associated protein 1 yes no 0 0 0 1 By MS/MS 5 0 1 1 32.047 31.987 3 0.0046956 7480 20211116_3433_TMUAki_TMT10x_P_F5 69.554 42.073 844240 1402700 4144.4 1302000 1461300 1552500 1028200 726230 812660 813100 1015100 786100 1308500 82498 1339100 1390500 1547600 1058900 782690 843360 790530 972950 1 1 1 1 1 1 1 1 1 1 1 844240 1402700 4144.4 1302000 1461300 1552500 1028200 726230 812660 813100 1015100 786100 1308500 82498 1339100 1390500 1547600 1058900 782690 843360 790530 972950 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 54673000 54673000 0 14323 2447 13118 75088 90666 90666 1 NIEDVIAQGIGK Unmodified 1255.6772 0.67721588 507 P05387 RPLP2 60S acidic ribosomal protein P2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.58 1.58 1 4 4 4 7 12 1 19 14 58.793 58.82 2;3 3.8374E-24 22892 20211116_3445_TMUAki_TMT10x_S_F6 249.22 185.18 252630000 409360000 672580 443150000 234730000 311020000 257090000 193850000 211650000 230220000 278150000 235210000 382100000 19067000 447730000 225530000 322360000 258200000 204090000 219660000 223350000 266270000 33 33 9 33 33 33 33 33 33 33 33 127300000 197260000 265020 212550000 143790000 208330000 141870000 96211000 105510000 112010000 133260000 118510000 184120000 9205600 215690000 137720000 209970000 142880000 103950000 109920000 108750000 127690000 21 21 6 21 21 21 21 21 21 21 21 125340000 212110000 407550 230600000 90941000 102690000 115220000 97638000 106130000 118210000 144890000 116700000 197990000 9861400 232030000 87806000 112390000 115320000 100140000 109750000 114600000 138570000 12 12 3 12 12 12 12 12 12 12 12 46603000000 24502000000 22100000000 14324 507 13119 75089;75090;75091;75092;75093;75094;75095;75096;75097;75098;75099;75100;75101;75102;75103;75104;75105;75106;75107;75108;75109;75110;75111;75112;75113;75114;75115;75116;75117;75118;75119;75120;75121 90667;90668;90669;90670;90671;90672;90673;90674;90675;90676;90677;90678;90679;90680;90681;90682;90683;90684;90685;90686;90687;90688;90689;90690;90691;90692;90693;90694;90695;90696;90697;90698;90699;90700;90701;90702;90703;90704;90705 90698 39 NIEDYIHR Unmodified 1058.5145 0.51450765 2677 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 0 0 0 0 By MS/MS 3 0 1 1 39.705 39.758 3 0.0037923 11727 20211116_3430_TMUAki_TMT10x_P_F3 82.287 33.493 242230 375770 2078.8 381120 473040 517240 329660 295410 297350 272140 342560 225560 350660 25253 390460 450100 513540 340890 310850 305520 266740 329050 1 1 1 1 1 1 1 1 1 1 1 242230 375770 2078.8 381120 473040 517240 329660 295410 297350 272140 342560 225560 350660 25253 390460 450100 513540 340890 310850 305520 266740 329050 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8583400 8583400 0 14325 2677 13120 75122 90706 90706 1 NIEIDSPYEISR Unmodified 1434.6991 0.69907354 494 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.71 1.03 1 2 2 2 4 3 55.283 55.081 2 3.2895E-15 16897 20211116_3442_TMUAki_TMT10x_S_F4 191.31 150.93 8735600 14986000 16221 16068000 10186000 11618000 9202000 11375000 11290000 10250000 12061000 8133500 13988000 520390 16249000 9739800 12105000 9450100 11544000 11421000 10057000 11611000 4 4 1 4 4 4 4 4 4 4 4 2711100 4366700 0 4889700 4713700 6072700 3988600 3644500 3537300 3124900 3576500 2524100 4076500 226440 4969000 4499800 6059000 4069700 3812400 3619800 3073300 3448900 1 1 0 1 1 1 1 1 1 1 1 6024500 10619000 16221 11178000 5471800 5545100 5213500 7730600 7752400 7125100 8484300 5609400 9911000 293950 11280000 5240000 6045600 5380300 7731500 7801600 6983700 8161800 3 3 1 3 3 3 3 3 3 3 3 2814300000 1128100000 1686200000 14326 494 13121 75123;75124;75125;75126;75127;75128;75129 90707;90708;90709;90710;90711;90712;90713 90713 7 NIELICQENEGENDPVLQR Unmodified 2269.0645 0.06447411 1824 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.23 1.05 4 4 3 2 6 7 59.219 59.016 2;3 4.3972E-151 17984 20211116_3440_TMUAki_TMT10x_S_F2 397.92 375.39 28757000 51953000 113720 49123000 34913000 44850000 33275000 38378000 33211000 34555000 40681000 26772000 48467000 1882800 50250000 33412000 45808000 33836000 39233000 34054000 33906000 39012000 16 16 4 16 16 16 16 16 16 16 16 13723000 24742000 50762 23043000 18934000 29573000 18402000 18102000 15460000 16550000 19273000 12776000 23080000 791270 23726000 18130000 29466000 18603000 18937000 15992000 16228000 18474000 6 6 1 6 6 6 6 6 6 6 6 15034000 27211000 62956 26080000 15979000 15277000 14873000 20276000 17750000 18005000 21408000 13997000 25387000 1091600 26524000 15282000 16342000 15233000 20295000 18062000 17678000 20538000 10 10 3 10 10 10 10 10 10 10 10 26404000000 14564000000 11840000000 14327 1824 13122 75130;75131;75132;75133;75134;75135;75136;75137;75138;75139;75140;75141;75142 90714;90715;90716;90717;90718;90719;90720;90721;90722;90723;90724;90725;90726;90727;90728;90729 90725 16 NIEMTQEDVR Oxidation (M) 1249.5609 0.5608655 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 1 0 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 31.311 31.252 2 0.0026818 8468 20211116_3439_TMUAki_TMT10x_S_F1 83.456 75.857 315800 507140 2029.7 533500 639010 467270 390020 265630 331690 261840 452020 294040 473310 30154 541410 606410 475570 406830 280130 344260 255890 432320 3 3 1 3 3 3 3 3 3 3 3 209900 321990 2029.7 357560 535230 394380 284640 182280 226830 175950 309420 195450 300580 23017 362800 506970 394730 300030 195840 236220 172100 295930 2 2 1 2 2 2 2 2 2 2 2 105900 185160 0 175950 103780 72885 105390 83346 104860 85896 142600 98588 172730 7136.6 178600 99445 80842 106800 84289 108030 83786 136390 1 1 0 1 1 1 1 1 1 1 1 45833000 27461000 18371000 14328 352 13123 75143;75144;75145 90730;90731;90732 90732 268 3 NIEMTQEDVR Unmodified 1233.566 0.56595087 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 By MS/MS 2 0 1 1 35.591 35.69 2 7.0208E-05 8361 20211116_3440_TMUAki_TMT10x_S_F2 128.81 90.518 114270 178260 0 241030 120250 78513 116950 88717 75182 66192 125760 106390 166570 8832.8 239030 115170 90238 117510 89012 80108 65575 119750 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 114270 178260 0 241030 120250 78513 116950 88717 75182 66192 125760 106390 166570 8832.8 239030 115170 90238 117510 89012 80108 65575 119750 1 1 0 1 1 1 1 1 1 1 1 7736300 0 7736300 14329 352 13123 75146 90733 90733 1 NIESLSDLRPPPQNPR Unmodified 1831.9541 0.95405945 2813 Q9H5Y7 SLITRK6 SLIT and NTRK-like protein 6 yes yes 0 0 0 1 By MS/MS 7 0 1 1 46.836 47.326 3 0.0057344 14747 20211116_3446_TMUAki_TMT10x_S_F7 61.495 42.529 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14330 2813 13124 75147 90734 90734 1 NIEVMNSFELLSHTVEEK Oxidation (M) 2134.0252 0.025235058 2062 Q7L5N1 COPS6 COP9 signalosome complex subunit 6 yes yes 0 0 1 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 72.475 72.258 3 0.00012052 24594 20211116_3429_TMUAki_TMT10x_P_F2 69.763 54.835 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14331 2062 13125 75148;75149;75150 90735;90736;90737 90735 2574 3 NIEYPVDLEISK Unmodified 1418.7293 0.72931103 1729 Q14694;Q14694-3;Q14694-2 USP10 Ubiquitin carboxyl-terminal hydrolase 10 yes no 0 0 0 0 By MS/MS 4 0 3 3 67.764 67.846 2;3 1.4349E-14 21721 20211116_3431_TMUAki_TMT10x_P_F4 147.71 106.17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14332 1729 13126 75151;75152;75153 90738;90739;90740 90740 3 NIFIECTGTDFTK Unmodified 1544.7181 0.71809442 2941 Q9NSD9;Q9NSD9-2 FARSB Phenylalanine--tRNA ligase beta subunit yes no 0 0 0 0 By MS/MS By MS/MS 6 0 3 1 2 66.459 66.404 2;3 5.7447E-24 20540 20211116_3445_TMUAki_TMT10x_S_F6 190.78 137.46 2519800 4303300 28414 4071500 3222100 2760500 2727700 3460600 2665400 3102900 3569200 2346400 4014600 245220 4150300 3078800 2908800 2790700 3472500 2746400 3045200 3415100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2519800 4303300 28414 4071500 3222100 2760500 2727700 3460600 2665400 3102900 3569200 2346400 4014600 245220 4150300 3078800 2908800 2790700 3472500 2746400 3045200 3415100 1 1 1 1 1 1 1 1 1 1 1 326270000 0 326270000 14333 2941 13127 75154;75155;75156 90741;90742;90743 90743 3 NIFPSNLVSAAFR Unmodified 1434.7619 0.76194857 1827 Q15758 SLC1A5 Neutral amino acid transporter B(0) yes yes 0 0 0 0 By MS/MS By matching 4.67 0.471 1 2 2 1 77.147 77.167 2 3.2505E-09 25801 20211116_3433_TMUAki_TMT10x_P_F5 135.15 90.07 3625500 5776700 45211 5347800 4537800 7849500 4665500 4725500 4574800 4709700 4979900 3376000 5388600 355490 5523300 4357000 7772000 4722900 4961700 4672500 4600300 4791400 1 1 1 1 1 1 1 1 1 1 1 3625500 5776700 45211 5347800 4537800 7849500 4665500 4725500 4574800 4709700 4979900 3376000 5388600 355490 5523300 4357000 7772000 4722900 4961700 4672500 4600300 4791400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1342600000 781240000 561320000 14334 1827 13128 75157;75158;75159 90744 90744 1 NIFPYHEVTVKR Unmodified 1501.8041 0.80414773 933 P35573;P35573-2;P35573-3 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 42.109 41.988 4 0.00064263 10994 20211116_3440_TMUAki_TMT10x_S_F2 79.795 62.564 1660100 2836300 56530 2823900 3608600 3117300 1938700 2044000 2146200 1943500 2423600 1546100 2646500 217600 2886100 3421500 3133400 2060300 2129400 2184100 1902300 2329400 2 2 2 2 2 2 2 2 2 2 2 1205600 2065000 50466 1986900 3133900 2701100 1540600 1416300 1498000 1309300 1730100 1122900 1926600 173990 2043200 2967900 2678800 1644700 1501600 1534100 1283100 1661800 1 1 1 1 1 1 1 1 1 1 1 454420 771310 6063.9 836960 474740 416130 398070 627740 648130 634270 693480 423160 719960 43611 842910 453640 454640 415530 627760 650030 619190 667570 1 1 1 1 1 1 1 1 1 1 1 86011000 57406000 28605000 14335 933 13129 75160;75161 90745;90746 90746 2 NIGFSHLQQR Unmodified 1198.6207 0.62070406 2720 Q9BXW9;Q9BXW9-3;Q9BXW9-1 FANCD2 Fanconi anemia group D2 protein yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 33.854 33.859 3 3.8236E-08 9470 20211116_3439_TMUAki_TMT10x_S_F1 160.18 120.86 657350 1058100 5110 1119600 1175500 944670 757130 690620 839590 657790 981270 612100 987500 66519 1135200 1117000 967450 792420 714010 855560 643790 942210 2 2 2 2 2 2 2 2 2 2 2 319510 512470 3236.1 532580 822020 661260 423310 341580 398920 320660 473140 297520 478260 36543 543820 778360 658530 449480 362800 409540 314040 454120 1 1 1 1 1 1 1 1 1 1 1 337840 545590 1873.8 587030 353520 283410 333820 349030 440660 337130 508140 314580 509240 29976 591400 338590 308920 342950 351210 446020 329750 488090 1 1 1 1 1 1 1 1 1 1 1 106780000 58544000 48231000 14336 2720 13130 75162;75163 90747;90748 90748 2 NIGLGFK Unmodified 747.42792 0.42792448 1348 P62280 RPS11 40S ribosomal protein S11 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.04 2 2 2 2 4 4 53.233 53.116 2 0.0027059 15231 20211116_3428_TMUAki_TMT10x_P_F1 122.78 24.643 97128000 148560000 1237800 152240000 154900000 154460000 96008000 112940000 112440000 100810000 133480000 90442000 138630000 9571200 155090000 147090000 156290000 100970000 116560000 114420000 98954000 128110000 9 9 4 9 9 9 9 9 9 9 9 56946000 85030000 1208200 86571000 116180000 119920000 53677000 68078000 67194000 61416000 77820000 53029000 79348000 6404900 88706000 109880000 118940000 58133000 71634000 68144000 60257000 74741000 5 5 3 5 5 5 5 5 5 5 5 40182000 63525000 29670 65673000 38728000 34545000 42332000 44857000 45245000 39392000 55662000 37412000 59284000 3166400 66380000 37216000 37344000 42841000 44924000 46271000 38697000 53372000 4 4 1 4 4 4 4 4 4 4 4 7423400000 4087200000 3336200000 14337 1348 13131 75164;75165;75166;75167;75168;75169;75170;75171 90749;90750;90751;90752;90753;90754;90755;90756;90757;90758;90759 90749 11 NIGNTFFK Unmodified 939.48142 0.48141661 1549 Q08752 PPID Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 55.185 55.061 2 0.0023571 16114 20211116_3428_TMUAki_TMT10x_P_F1 110.55 47.711 10679000 16827000 142530 19379000 25071000 27627000 15618000 16918000 17628000 14106000 16409000 9944200 15711000 1219800 19713000 23810000 27395000 16398000 17657000 17802000 13893000 15867000 3 3 3 3 3 3 3 3 3 3 3 10679000 16827000 142530 19379000 25071000 27627000 15618000 16918000 17628000 14106000 16409000 9944200 15711000 1219800 19713000 23810000 27395000 16398000 17657000 17802000 13893000 15867000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 611640000 611640000 0 14338 1549 13132 75172;75173;75174 90760;90761;90762;90763 90761 4 NIGPLVK Unmodified 739.45922 0.4592246 842 P28331;P28331-3;P28331-4;P28331-5;P28331-2 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 0 0 0 0 By MS/MS 8 0 1 1 46.22 46.141 2 0.089609 12065 20211116_3447_TMUAki_TMT10x_S_F8 60.358 34.532 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14339 842 13133 75175 90764 90764 1 NIGVDNPAAK Unmodified 997.51926 0.51925868 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 1 3 38.183 38.276 2;3 2.3124E-06 9750 20211116_3431_TMUAki_TMT10x_P_F4 151.22 103.37 3019200 5069600 0 4706700 4825000 4464100 3557000 2728400 3373500 2559200 4173100 2811000 4729100 247740 4823600 4592700 4523700 3668700 2856600 3468300 2506400 4000900 2 2 0 2 2 2 2 2 2 2 2 1662900 2905700 0 2704100 3358300 3315900 2017600 1601100 1900900 1476700 2325500 1548100 2710500 141530 2782000 3185100 3301800 2113100 1710700 1954000 1447400 2230200 1 1 0 1 1 1 1 1 1 1 1 1356300 2163900 0 2002600 1466700 1148200 1539400 1127400 1472500 1082400 1847600 1262800 2018500 106210 2041600 1407600 1221900 1555600 1145900 1514300 1059000 1770700 1 1 0 1 1 1 1 1 1 1 1 212480000 94524000 117960000 14340 1429 13134 75176;75177;75178;75179 90765;90766;90767;90768 90765 4 NIHLNLDR Unmodified 993.53558 0.53557744 3327 Q9Y5S9;Q9Y5S9-2 RBM8A RNA-binding protein 8A yes no 0 0 0 0 By MS/MS By MS/MS 4 1.22 1 1 2 3 1 35.782 35.766 3 0.00017493 9023 20211116_3433_TMUAki_TMT10x_P_F5 157.91 92.658 1097500 1759500 46030 1571900 1988500 2042300 1310600 1423000 1439600 1510500 1508300 1022200 1641100 144950 1623900 1892300 2037700 1368800 1480700 1461300 1471600 1452900 3 3 2 3 3 3 3 3 3 3 3 863810 1326000 46030 1224000 1720800 1765600 1047800 1080200 1116400 1165300 1156200 804640 1236900 126520 1264000 1635900 1749800 1100100 1135400 1134200 1134600 1114100 2 2 2 2 2 2 2 2 2 2 2 233690 433480 0 347900 267700 276770 262810 342850 323190 345120 352170 217580 404160 18432 359900 256470 287830 268710 345320 327180 336970 338830 1 1 0 1 1 1 1 1 1 1 1 413440000 282790000 130650000 14341 3327 13135 75180;75181;75182;75183 90769;90770;90771 90770 3 NIHLNLDRR Unmodified 1149.6367 0.63668847 3327 Q9Y5S9;Q9Y5S9-2 RBM8A RNA-binding protein 8A yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 31.981 31.996 3 0.00034774 8705 20211116_3439_TMUAki_TMT10x_S_F1 117.01 62.475 872770 1536300 868.3 1429800 1426000 1192200 1132200 1166700 1141200 1024600 1265400 812610 1433200 76864 1462600 1359700 1228600 1164000 1183200 1165000 1006600 1216800 2 2 1 2 2 2 2 2 2 2 2 342480 569800 0 508010 612960 674220 455170 396700 445350 374810 493240 318850 531450 28130 525100 583500 670370 469640 416680 455190 366960 474330 1 1 0 1 1 1 1 1 1 1 1 530290 966530 868.3 921780 813000 517950 676990 769980 695820 649820 772160 493760 901710 48733 937490 776180 558230 694390 766550 709760 639600 742510 1 1 1 1 1 1 1 1 1 1 1 54100000 24004000 30096000 14342 3327 13136 75184;75185 90772;90773 90773 2 NIHPIYNIK Unmodified 1110.6186 0.61857879 1652 Q13601;Q13601-2 KRR1 KRR1 small subunit processome component homolog yes no 0 0 0 0 By matching By MS/MS 1 0 2 1 1 41.735 41.644 3 0.023394 12691 20211116_3439_TMUAki_TMT10x_S_F1 53.089 33.991 815380 1289200 0 1497600 747310 664610 782270 1043000 1086200 886670 1208000 759200 1203800 65853 1500600 717380 736950 801070 1036700 1096100 872410 1161500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 815380 1289200 0 1497600 747310 664610 782270 1043000 1086200 886670 1208000 759200 1203800 65853 1500600 717380 736950 801070 1036700 1096100 872410 1161500 1 1 0 1 1 1 1 1 1 1 1 97929000 66280000 31649000 14343 1652 13137 75186;75187 90774 90774 1 NIIFFVRPR Unmodified 1160.6818 0.68184775 2412 Q96AX1 VPS33A Vacuolar protein sorting-associated protein 33A yes yes 0 0 0 1 By MS/MS 8 0 1 1 55.469 55.416 3 1.0454E-05 15811 20211116_3447_TMUAki_TMT10x_S_F8 141.48 74.788 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14344 2412 13138 75188 90775 90775 1 NIIGVIPYFPYSK Unmodified 1509.8232 0.82315184 1714 Q14558;Q14558-2 PRPSAP1 Phosphoribosyl pyrophosphate synthase-associated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.8 0.4 1 4 2 3 78.814 78.817 2;3 2.6769E-06 26480 20211116_3433_TMUAki_TMT10x_P_F5 108.59 89.762 17401000 29037000 91069 27720000 21034000 25801000 22969000 17197000 16509000 17864000 22263000 16202000 27090000 1476900 28343000 20216000 26209000 22998000 17939000 17282000 17419000 21298000 6 6 3 6 6 6 6 6 6 6 6 8431600 14066000 87261 13530000 8766400 15465000 10484000 8549800 8146900 8126900 10929000 7851100 13123000 758030 13869000 8452400 15480000 10473000 9029200 8489100 7954600 10457000 3 3 2 3 3 3 3 3 3 3 3 8969300 14970000 3807.3 14191000 12268000 10336000 12485000 8647000 8362300 9736800 11334000 8350700 13966000 718830 14474000 11764000 10729000 12525000 8909500 8793000 9464500 10842000 3 3 1 3 3 3 3 3 3 3 3 2128400000 818580000 1309800000 14345 1714 13139 75189;75190;75191;75192;75193 90776;90777;90778;90779;90780;90781 90777 6 NIIGYFEQK Unmodified 1110.571 0.5709599 2647 Q9BS26 ERP44 Endoplasmic reticulum resident protein 44 yes yes 0 0 0 0 By MS/MS 7 0 1 1 66.717 67.288 2 2.8449E-05 22395 20211116_3435_TMUAki_TMT10x_P_F7 134.25 94.202 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14346 2647 13140 75194 90782 90782 1 NIIHGSDSVESAEK Unmodified 1484.7107 0.71070086 684 P15531;P15531-2 NME1 Nucleoside diphosphate kinase A yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 34.326 34.314 3 7.667E-07 8137 20211116_3431_TMUAki_TMT10x_P_F4 117 97.672 1045800 1761800 54812 1939900 2940900 2755900 1489700 1383100 1618300 1253600 1606600 974160 1644600 164330 1978700 2786700 2726400 1590900 1471600 1640300 1229600 1550200 2 2 2 2 2 2 2 2 2 2 2 1045800 1761800 54812 1939900 2940900 2755900 1489700 1383100 1618300 1253600 1606600 974160 1644600 164330 1978700 2786700 2726400 1590900 1471600 1640300 1229600 1550200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 190260000 190260000 0 14347 684 13141 75195;75196 90783;90784 90783 2 NIILEEGK Unmodified 914.5073 0.50729701 787 P23528 CFL1 Cofilin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 47.713 47.735 2 0.00040935 13453 20211116_3431_TMUAki_TMT10x_P_F4 141.2 39.765 34037000 46293000 212280 65780000 39209000 31459000 30098000 18455000 21131000 18918000 35207000 31692000 43269000 2982200 65217000 37372000 33873000 30728000 19433000 22389000 18458000 33527000 5 5 3 5 5 5 5 5 5 5 5 19405000 25436000 58078 36130000 29735000 23354000 16694000 10442000 12001000 10478000 20069000 18068000 23774000 1697700 35912000 28180000 24289000 17470000 11269000 12701000 10232000 19110000 3 3 1 3 3 3 3 3 3 3 3 14631000 20857000 154210 29651000 9473500 8104700 13404000 8012700 9129900 8439900 15138000 13625000 19495000 1284500 29305000 9191800 9583500 13258000 8164200 9688300 8225300 14417000 2 2 2 2 2 2 2 2 2 2 2 2307300000 1510400000 796870000 14348 787 13142 75197;75198;75199;75200;75201;75202 90785;90786;90787;90788;90789;90790 90786 6 NIILEEGKEILVGDVGQTVDDPYATFVK Unmodified 3061.5859 0.58594784 787 P23528 CFL1 Cofilin-1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.1 1.71 2 3 6 7 4 5 1 1 16 13 81.214 81.201 3;4;5 2.1906E-42 27099 20211116_3442_TMUAki_TMT10x_S_F4 193.92 177.81 229350000 405800000 1896300 249950000 274350000 459890000 348530000 321250000 321040000 347850000 343770000 213550000 378080000 14054000 269140000 264950000 452440000 348800000 334420000 328610000 338630000 330920000 34 34 16 34 34 34 34 34 34 34 34 134450000 229760000 908340 145590000 124450000 308300000 170600000 188270000 187810000 204530000 199350000 125190000 214080000 7090700 156910000 120520000 301340000 171160000 197970000 190720000 199090000 191950000 21 21 11 21 21 21 21 21 21 21 21 94897000 176040000 987930 104360000 149900000 151590000 177930000 132980000 133220000 143310000 144420000 88358000 164000000 6963800 112240000 144430000 151100000 177630000 136450000 137890000 139540000 138970000 13 13 5 13 13 13 13 13 13 13 13 113370000000 55759000000 57614000000 14349 787 13143 75203;75204;75205;75206;75207;75208;75209;75210;75211;75212;75213;75214;75215;75216;75217;75218;75219;75220;75221;75222;75223;75224;75225;75226;75227;75228;75229;75230;75231 90791;90792;90793;90794;90795;90796;90797;90798;90799;90800;90801;90802;90803;90804;90805;90806;90807;90808;90809;90810;90811;90812;90813;90814;90815;90816;90817;90818;90819;90820;90821;90822;90823 90817 33 NIILGGVK Unmodified 812.51199 0.51198846 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 52.18 52.138 2 0.001034 14886 20211116_3428_TMUAki_TMT10x_P_F1 129.4 43.285 17404000 29355000 82444 27525000 27183000 29916000 19284000 27869000 27455000 23197000 26889000 16204000 27385000 1568600 28245000 25865000 30283000 20227000 28298000 27553000 22848000 25956000 5 5 3 5 5 5 5 5 5 5 5 7995000 12899000 46018 12284000 17393000 20737000 10747000 13388000 12905000 10683000 12417000 7444200 12034000 803120 12701000 16511000 20438000 11315000 13902000 13017000 10545000 11994000 2 2 1 2 2 2 2 2 2 2 2 9408600 16456000 36426 15242000 9789800 9179400 8537000 14481000 14550000 12514000 14471000 8760100 15350000 765520 15544000 9354200 9844500 8911100 14397000 14536000 12303000 13962000 3 3 2 3 3 3 3 3 3 3 3 815310000 556710000 258600000 14350 769 13144 75232;75233;75234;75235;75236;75237 90824;90825;90826;90827;90828;90829;90830 90824 7 NIIQQAIDAGEVPSYNAFVK Unmodified 2176.1164 0.11643333 2326 Q8WXX5 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 4 4 5 3 78.851 78.865 2;3 3.1517E-32 25343 20211116_3447_TMUAki_TMT10x_S_F8 194.85 174.01 20150000 35170000 188660 30024000 22386000 31218000 26054000 21293000 23523000 23955000 28256000 18763000 32798000 1107600 31010000 21566000 31506000 26157000 22230000 24210000 23286000 27111000 8 8 5 8 8 8 8 8 8 8 8 11110000 18381000 1696.5 16326000 9917700 20503000 12399000 10702000 12687000 12165000 14722000 10345000 17144000 135890 16863000 9570400 20410000 12456000 11420000 12967000 11820000 14139000 4 4 1 4 4 4 4 4 4 4 4 9039700 16788000 186960 13698000 12468000 10714000 13654000 10591000 10836000 11791000 13534000 8418200 15654000 971710 14148000 11996000 11096000 13701000 10810000 11243000 11466000 12972000 4 4 4 4 4 4 4 4 4 4 4 12581000000 6894400000 5686700000 14351 2326 13145 75238;75239;75240;75241;75242;75243;75244;75245 90831;90832;90833;90834;90835;90836;90837;90838;90839 90839 9 NIIRPQLK Unmodified 980.6131 0.61309948 1486 Q01780;Q01780-2 EXOSC10 Exosome component 10 yes no 0 0 0 1 By matching By MS/MS 2 0.816 1 1 1 2 1 37.779 37.613 3 0.003256 12062 20211116_3441_TMUAki_TMT10x_S_F3 93.195 43.659 926700 1494700 1602.2 1397200 970940 798800 1027600 966820 983490 933260 1236500 862860 1394400 78943 1423400 932500 854450 1038000 973510 1011400 912850 1185000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 926700 1494700 1602.2 1397200 970940 798800 1027600 966820 983490 933260 1236500 862860 1394400 78943 1423400 932500 854450 1038000 973510 1011400 912850 1185000 1 1 1 1 1 1 1 1 1 1 1 66208000 29968000 36241000 14352 1486 13146 75246;75247;75248 90840 90840 1 NIITNLSK Unmodified 901.52328 0.52328142 624 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 49.654 49.585 2 0.00068993 13838 20211116_3428_TMUAki_TMT10x_P_F1 135.79 66.367 15786000 25451000 277340 28557000 34830000 30957000 19095000 24999000 24703000 21269000 25702000 14700000 23760000 1833900 28950000 33018000 31255000 20366000 25606000 24921000 20926000 24763000 4 4 4 4 4 4 4 4 4 4 4 9439600 14886000 218440 17285000 28768000 25455000 13012000 14871000 14953000 12771000 15514000 8790800 13899000 1256900 17586000 27201000 25190000 14082000 15591000 15147000 12560000 14948000 2 2 2 2 2 2 2 2 2 2 2 6346100 10565000 58902 11272000 6062200 5501700 6083700 10128000 9749500 8497700 10188000 5909200 9861200 577050 11363000 5816900 6064700 6283300 10015000 9773600 8366500 9814700 2 2 2 2 2 2 2 2 2 2 2 897010000 573440000 323570000 14353 624 13147 75249;75250;75251;75252 90841;90842;90843;90844 90841 4 NIKPLLSTFSQVPGSENEK Unmodified 2087.0899 0.089884225 2462 Q96FV9;Q96FV9-2 THOC1 THO complex subunit 1 yes no 0 0 0 1 By matching By MS/MS 3.2 1.17 2 1 1 1 1 4 66.125 65.901 4 0.00017435 20853 20211116_3440_TMUAki_TMT10x_S_F2 71.742 59.786 51791000 92373000 704760 81542000 52656000 56276000 70242000 48501000 45594000 52985000 65590000 48225000 86153000 4633200 83573000 50953000 58714000 69567000 49839000 48172000 51563000 62653000 10 10 6 10 10 10 10 10 10 10 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 51791000 92373000 704760 81542000 52656000 56276000 70242000 48501000 45594000 52985000 65590000 48225000 86153000 4633200 83573000 50953000 58714000 69567000 49839000 48172000 51563000 62653000 10 10 6 10 10 10 10 10 10 10 10 14432000000 1097200000 13335000000 14354 2462 13148 75253;75254;75255;75256;75257 90845;90846 90845 2 NILAEQLQAETELFAEAEEMR Oxidation (M) 2450.1635 0.16351945 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 1 0 By MS/MS By MS/MS 1 0 4 2 2 80.589 80.579 2;3 6.6111E-14 26516 20211116_3428_TMUAki_TMT10x_P_F1 125.75 116 8900700 15272000 117920 13372000 8259700 13759000 9799400 8221900 9703500 10558000 11246000 8288000 14244000 603930 13782000 7963300 13868000 9856500 8708900 9930600 10216000 10801000 6 6 4 6 6 6 6 6 6 6 6 5656800 9790400 41681 8335600 4530300 10190000 5574500 5413000 6488100 7339600 7096900 5267400 9130000 293420 8634200 4372600 10159000 5628200 5802300 6582100 7088900 6827300 4 4 3 4 4 4 4 4 4 4 4 3243800 5481900 76239 5036300 3729500 3569000 4224800 2808900 3215500 3218800 4148700 3020600 5113500 310510 5147400 3590700 3709300 4228300 2906600 3348500 3126800 3973200 2 2 1 2 2 2 2 2 2 2 2 4026300000 2790300000 1236000000 14355 935 13149 75258;75259;75260;75261 90847;90848;90849;90850;90851;90852;90853 90847 1192 7 NILETLLQMK Unmodified 1201.674 0.67404476 1441 P82673 MRPS35 28S ribosomal protein S35, mitochondrial yes yes 0 0 0 0 By MS/MS 3 0 1 1 80.954 80.917 2 6.9043E-09 29593 20211116_3441_TMUAki_TMT10x_S_F3 146.11 106.11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14356 1441 13150 75262 90854 90854 1 NILFVITKPDVYK Unmodified 1548.8916 0.89156576 59 E9PAV3;Q13765;E9PAV3-2 NACA Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha no no 0 0 0 1 By MS/MS By MS/MS 3.5 0.957 2 4 4 2 6 6 73.815 73.714 2;3;4 2.8185E-17 24502 20211116_3442_TMUAki_TMT10x_S_F4 190.15 148.15 348730000 565330000 3836100 568220000 344430000 469100000 367830000 252890000 252850000 273920000 364710000 324720000 527530000 31360000 577990000 331000000 479140000 368320000 268670000 266230000 266660000 348360000 22 22 13 22 22 22 22 22 22 22 22 245300000 390950000 3286900 396500000 235190000 380800000 255150000 180570000 179620000 194690000 248970000 228420000 364820000 22431000 403870000 226160000 384400000 255430000 194120000 188500000 189560000 238020000 13 13 8 13 13 13 13 13 13 13 13 103430000 174380000 549170 171720000 109240000 88299000 112680000 72322000 73227000 79234000 115750000 96303000 162710000 8929200 174120000 104850000 94740000 112890000 74545000 77731000 77099000 110340000 9 9 5 9 9 9 9 9 9 9 9 29855000000 17341000000 12515000000 14357 59 13151 75263;75264;75265;75266;75267;75268;75269;75270;75271;75272;75273;75274 90855;90856;90857;90858;90859;90860;90861;90862;90863;90864;90865;90866;90867;90868;90869;90870;90871;90872;90873;90874;90875;90876 90875 22 NILGGTVFR Unmodified 975.55016 0.55016488 1083;364 O75874;P48735;P48735-2 IDH1;IDH2 Isocitrate dehydrogenase [NADP] cytoplasmic;Isocitrate dehydrogenase [NADP], mitochondrial no no 0 0 0 0 By MS/MS By MS/MS 2.67 1.15 2 2 2 3 3 6 51.313 51.132 2 6.1915E-06 19236 20211116_3441_TMUAki_TMT10x_S_F3 166.16 120.85 74470000 116080000 1632800 121170000 107320000 134760000 92019000 111580000 107250000 103690000 108840000 69350000 108340000 8049900 123460000 102610000 135930000 94611000 114380000 108500000 101590000 104940000 14 14 11 14 14 14 14 14 14 14 14 47993000 72197000 1012600 76322000 78439000 108290000 64984000 72412000 70894000 67045000 69361000 44693000 67383000 5278200 78048000 74929000 107540000 66803000 75274000 71810000 65700000 66957000 7 7 5 7 7 7 7 7 7 7 7 26477000 43887000 620140 44853000 28884000 26476000 27035000 39164000 36356000 36645000 39477000 24657000 40955000 2771800 45414000 27684000 28390000 27808000 39103000 36688000 35893000 37985000 7 7 6 7 7 7 7 7 7 7 7 6921100000 3669700000 3251400000 14358 364;1083 13152 75275;75276;75277;75278;75279;75280;75281;75282;75283 90877;90878;90879;90880;90881;90882;90883;90884;90885;90886;90887;90888;90889;90890;90891;90892 90889 16 NILGGTVFREPIICK Unmodified 1715.9393 0.939261 1083 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 2.75 0.968 1 2 3 2 4 4 64.692 64.467 3;4 3.4979E-30 23039 20211116_3441_TMUAki_TMT10x_S_F3 211.78 151.38 155730000 258140000 3617700 243730000 182460000 220550000 179130000 160570000 135810000 150840000 197350000 145030000 240820000 16449000 249310000 175070000 224770000 180530000 166000000 142240000 147720000 188470000 12 12 9 12 12 12 12 12 12 12 12 84839000 137700000 2458400 131970000 89487000 146230000 98704000 90418000 75265000 83574000 106790000 79011000 128470000 9273600 135240000 86178000 146840000 98912000 94543000 78714000 81905000 102040000 6 6 4 6 6 6 6 6 6 6 6 70891000 120440000 1159300 111760000 92973000 74321000 80427000 70156000 60542000 67269000 90552000 66015000 112350000 7175300 114070000 88896000 77929000 81621000 71453000 63526000 65817000 86423000 6 6 5 6 6 6 6 6 6 6 6 20172000000 10929000000 9243500000 14359 1083 13153 75284;75285;75286;75287;75288;75289;75290;75291 90893;90894;90895;90896;90897;90898;90899;90900;90901;90902;90903;90904 90902 12 NILHQGQEAILQR Unmodified 1518.8267 0.82667409 2422 Q96C86 DCPS m7GpppX diphosphatase yes yes 0 0 0 0 By MS/MS By MS/MS 6.71 0.452 2 5 2 5 36.478 36.776 3 7.265E-23 12149 20211116_3435_TMUAki_TMT10x_P_F7 204.85 184.75 7415200 13155000 204170 14347000 12314000 12321000 8547800 11086000 10587000 9549300 11913000 6905800 12279000 872820 14522000 11724000 12649000 8930400 11288000 10728000 9389600 11451000 8 8 7 8 8 8 8 8 8 8 8 3667100 6137800 38990 6932800 8406800 9196600 5422400 5710600 5274900 4774000 5734400 3414700 5730200 405900 7050300 7988100 9150900 5651700 5954000 5389100 4701100 5517500 4 4 3 4 4 4 4 4 4 4 4 3748200 7017000 165180 7414700 3906800 3124300 3125400 5375300 5312000 4775300 6178800 3491100 6549100 466910 7472000 3736400 3498000 3278700 5333700 5339100 4688500 5933600 4 4 4 4 4 4 4 4 4 4 4 675100000 386940000 288160000 14360 2422 13154 75292;75293;75294;75295;75296;75297;75298 90905;90906;90907;90908;90909;90910;90911;90912;90913;90914 90908 10 NILIDFTKR Unmodified 1118.6448 0.64479354 1188 P52789 HK2 Hexokinase-2 yes yes 0 0 0 1 By MS/MS 3 0 1 1 58.185 57.778 3 0.0019327 20308 20211116_3441_TMUAki_TMT10x_S_F3 73.885 36.41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14361 1188 13155 75299 90915 90915 1 NILLTNEQLESAR Unmodified 1499.7944 0.79437091 2841 Q9H9B4 SFXN1 Sideroflexin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.29 0.452 5 2 3 4 53.024 53.159 2;3 4.3795E-44 15651 20211116_3431_TMUAki_TMT10x_P_F4 290.25 245.56 14832000 25801000 79470 26869000 19858000 22787000 16149000 19896000 18933000 17719000 21564000 13809000 24079000 1209600 27274000 18941000 23400000 16661000 20310000 19233000 17395000 20721000 6 6 1 6 6 6 6 6 6 6 6 6754900 11554000 79470 11377000 11429000 15715000 9557400 9755600 9515500 8502900 10280000 6289700 10781000 655660 11684000 10914000 15608000 9791000 10182000 9709300 8356000 9893300 3 3 1 3 3 3 3 3 3 3 3 8076700 14246000 0 15492000 8428400 7071700 6591900 10140000 9417500 9216200 11284000 7519200 13298000 553970 15590000 8027500 7792500 6870000 10128000 9523300 9039100 10828000 3 3 0 3 3 3 3 3 3 3 3 1962600000 1263700000 698840000 14362 2841 13156 75300;75301;75302;75303;75304;75305;75306 90916;90917;90918;90919;90920;90921;90922 90917 7 NILLTNEQLESARK Unmodified 1627.8893 0.88933392 2841 Q9H9B4 SFXN1 Sideroflexin-1 yes yes 0 0 0 1 By MS/MS 6.67 0.471 1 2 3 47.855 48.229 3 3.6617E-26 15141 20211116_3446_TMUAki_TMT10x_S_F7 190.41 152.86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14363 2841 13157 75307;75308;75309 90923;90924;90925 90925 3 NILMYGPPGTGK Oxidation (M) 1262.6329 0.63290823 2973 Q9NVI7;Q9NVI7-2;Q9NVI7-3 ATAD3A ATPase family AAA domain-containing protein 3A yes no 0 0 1 0 By MS/MS By MS/MS 1 0 3 1 2 53.847 53.65 2;3 0.0010315 17571 20211116_3439_TMUAki_TMT10x_S_F1 76.073 59.819 6220000 10245000 168950 11267000 7674600 9107200 6440700 9180100 8969700 8092600 8953500 5792700 9563400 693510 11390000 7337900 9412700 6675900 9297500 9013900 7948400 8637600 3 3 3 3 3 3 3 3 3 3 3 2369200 3806900 48842 3806000 3462500 5133000 3032400 2902400 3067800 2820400 3041800 2206300 3552200 257260 3902700 3312200 5097100 3099500 3061100 3118500 2758000 2935100 1 1 1 1 1 1 1 1 1 1 1 3850800 6438000 120110 7460800 4212000 3974300 3408300 6277800 5901900 5272100 5911700 3586400 6011100 436260 7486900 4025800 4315600 3576400 6236400 5895400 5190500 5702500 2 2 2 2 2 2 2 2 2 2 2 303310000 147540000 155770000 14364 2973 13158 75310;75311;75312 90926;90927;90928 90928 3055 3 NILPFDHTR Unmodified 1111.5774 0.57744226 1523 Q06124;Q06124-3;Q06124-1 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 40.625 41.228 3 2.9716E-05 10012 20211116_3434_TMUAki_TMT10x_P_F6 104.05 84.411 415950 708770 2743.7 719390 494930 355840 398960 508940 473520 415320 572460 387310 661400 38148 727710 472320 388370 412010 506930 481970 409480 549170 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 415950 708770 2743.7 719390 494930 355840 398960 508940 473520 415320 572460 387310 661400 38148 727710 472320 388370 412010 506930 481970 409480 549170 1 1 1 1 1 1 1 1 1 1 1 90852000 0 90852000 14365 1523 13159 75313;75314;75315 90929;90930;90931 90929 3 NILQLHDLTTGALLK Unmodified 1648.9512 0.9512059 1070 P48147 PREP Prolyl endopeptidase yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 71.346 71.088 3 2.5982E-10 22890 20211116_3440_TMUAki_TMT10x_S_F2 120.66 94.065 3467900 5407100 111310 5823300 3376400 6210900 4124600 3379800 3245800 3709100 4095400 3229800 5046900 389970 5917100 3263000 6239700 4117400 3589100 3370700 3609000 3924300 1 1 1 1 1 1 1 1 1 1 1 3467900 5407100 111310 5823300 3376400 6210900 4124600 3379800 3245800 3709100 4095400 3229800 5046900 389970 5917100 3263000 6239700 4117400 3589100 3370700 3609000 3924300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 844550000 844550000 0 14366 1070 13160 75316;75317 90932;90933 90933 2 NILSVVGTDALKK Unmodified 1356.7977 0.79766537 200 O43172;O43172-2 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes no 0 0 0 1 By MS/MS By MS/MS 2 0 3 2 1 63.937 63.7 3 2.594E-18 21197 20211116_3429_TMUAki_TMT10x_P_F2 145.69 111.31 8802600 15287000 41974 14566000 9083200 9230400 8351700 13930000 13892000 13521000 13804000 8196100 14262000 735240 14831000 8691100 9838000 8681200 13913000 13887000 13222000 13318000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8802600 15287000 41974 14566000 9083200 9230400 8351700 13930000 13892000 13521000 13804000 8196100 14262000 735240 14831000 8691100 9838000 8681200 13913000 13887000 13222000 13318000 2 2 1 2 2 2 2 2 2 2 2 465380000 0 465380000 14367 200 13161 75318;75319;75320 90934;90935;90936;90937 90935 4 NILTEIYR Unmodified 1020.5604 0.56039521 1836 Q15907 RAB11B Ras-related protein Rab-11B yes yes 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 57.779 58.513 2 0.0021698 18709 20211116_3435_TMUAki_TMT10x_P_F7 112.84 83.269 12285000 20971000 101080 19965000 19112000 27648000 16465000 15508000 17266000 16508000 17018000 11439000 19564000 1153600 20553000 18261000 27419000 16864000 16410000 17521000 16081000 16425000 2 2 1 2 2 2 2 2 2 2 2 12285000 20971000 101080 19965000 19112000 27648000 16465000 15508000 17266000 16508000 17018000 11439000 19564000 1153600 20553000 18261000 27419000 16864000 16410000 17521000 16081000 16425000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 504860000 504860000 0 14368 1836 13162 75321;75322;75323 90938;90939;90940;90941 90938 4 NINADEAAAMGAVYQAAALSK Oxidation (M) 2094.0052 0.0051683175 3301 Q9Y4L1;Q9Y4L1-2 HYOU1 Hypoxia up-regulated protein 1 yes no 0 0 1 0 By MS/MS By MS/MS 6 0.816 2 2 2 2 4 70.826 70.8 3 6.2384E-14 21989 20211116_3434_TMUAki_TMT10x_P_F6 126.61 110.67 17131000 30983000 263340 29457000 23605000 34283000 23431000 24629000 24243000 23830000 25759000 15952000 28905000 1738400 30231000 22644000 34410000 23801000 25505000 24682000 23307000 24802000 7 7 6 7 7 7 7 7 7 7 7 9748700 16224000 119290 16510000 12843000 23286000 13143000 13192000 13210000 12936000 13773000 9077700 15140000 944840 16924000 12328000 23077000 13318000 13914000 13456000 12644000 13269000 4 4 3 4 4 4 4 4 4 4 4 7381900 14759000 144050 12947000 10762000 10997000 10288000 11438000 11034000 10895000 11986000 6874400 13765000 793610 13306000 10316000 11333000 10483000 11591000 11226000 10663000 11533000 3 3 3 3 3 3 3 3 3 3 3 2301700000 1308800000 992880000 14369 3301 13163 75324;75325;75326;75327;75328;75329 90942;90943;90944;90945;90946;90947;90948;90949;90950;90951 90945 3266 10 NINDAWVCTNDMFR Oxidation (M) 1770.7454 0.74538858 1328 P61970 NUTF2 Nuclear transport factor 2 yes yes 0 0 1 0 By MS/MS By MS/MS 5 0 2 1 1 58.37 58.524 3 0.01412 18078 20211116_3433_TMUAki_TMT10x_P_F5 51.073 45.349 8867500 15082000 406930 16758000 11413000 12971000 11406000 12348000 11009000 10822000 11660000 8259600 14079000 1150100 16921000 10968000 13433000 11558000 12540000 11240000 10632000 11228000 2 2 2 2 2 2 2 2 2 2 2 2987800 5037000 152050 5166400 4316800 7144500 4498300 4028200 3821300 3360200 3665300 2783000 4700500 408020 5291000 4152900 7086300 4532400 4232900 3911600 3309300 3540600 1 1 1 1 1 1 1 1 1 1 1 5879800 10045000 254880 11592000 7095900 5826300 6907700 8319500 7187900 7461300 7994600 5476500 9378900 742050 11630000 6814600 6347100 7025300 8307200 7328800 7322500 7687100 1 1 1 1 1 1 1 1 1 1 1 1284600000 753220000 531430000 14370 1328 13164 75330;75331 90952 90952 1779 1 NINDAWVCTNDMFR Unmodified 1754.7505 0.75047396 1328 P61970 NUTF2 Nuclear transport factor 2 yes yes 0 0 0 0 By MS/MS 5 0 1 1 69.251 69.339 2 5.9986E-24 22561 20211116_3433_TMUAki_TMT10x_P_F5 179.35 174.39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14371 1328 13164 75332 90953 90953 1 NIPEDNADMAR Oxidation (M) 1260.5405 0.54046441 892 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 1 0 By matching By MS/MS 1 0 2 1 1 30.294 30.327 2 0.012761 8062 20211116_3439_TMUAki_TMT10x_S_F1 64.792 43.89 75633 142200 0 121910 84349 70298 82641 85143 95277 62841 112280 70403 132610 4070 125030 80683 75132 84307 85151 96978 62292 107790 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 75633 142200 0 121910 84349 70298 82641 85143 95277 62841 112280 70403 132610 4070 125030 80683 75132 84307 85151 96978 62292 107790 1 1 0 1 1 1 1 1 1 1 1 9899000 5105900 4793200 14372 892 13165 75333;75334 90954 90954 1085 1 NIPGITLLNVSK Unmodified 1267.75 0.7499869 953 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 0 0 By MS/MS By MS/MS 3.08 1.72 4 4 11 4 2 16 9 75.671 75.549 2;3 1.9151E-16 24676 20211116_3429_TMUAki_TMT10x_P_F2 205.97 168.42 135960000 234780000 281230 216120000 158850000 191410000 148020000 161060000 140280000 149530000 179150000 126580000 219000000 10547000 221420000 151970000 195840000 150470000 164940000 144420000 146510000 171620000 24 24 5 24 24 24 24 24 24 24 24 56548000 92341000 97300 84680000 69813000 116960000 70726000 64430000 58524000 59860000 70013000 52647000 86135000 4265000 87411000 66923000 115980000 71315000 68022000 60480000 58651000 67184000 14 14 3 14 14 14 14 14 14 14 14 79409000 142430000 183930 131440000 89035000 74449000 77293000 96629000 81751000 89670000 109140000 73934000 132870000 6281500 134010000 85047000 79857000 79154000 96918000 83944000 87863000 104430000 10 10 2 10 10 10 10 10 10 10 10 34287000000 19132000000 15155000000 14373 953 13166 75335;75336;75337;75338;75339;75340;75341;75342;75343;75344;75345;75346;75347;75348;75349;75350;75351;75352;75353;75354;75355;75356;75357;75358;75359 90955;90956;90957;90958;90959;90960;90961;90962;90963;90964;90965;90966;90967;90968;90969;90970;90971;90972;90973;90974;90975;90976;90977;90978;90979;90980;90981;90982;90983;90984;90985;90986;90987 90961 33 NIPGPHMVLVPK Oxidation (M) 1316.7275 0.72747731 260;844 P28370-2;P28370;O60264 SMARCA1;SMARCA5 Probable global transcription activator SNF2L1;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 no no 0 0 1 0 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 43.259 43.211 3 4.0177E-06 11328 20211116_3436_TMUAki_TMT10x_P_F8 109.24 82.121 7055500 11836000 71041 12273000 12266000 12907000 8429000 11666000 11671000 10109000 10977000 6569900 11046000 723360 12500000 11669000 13082000 8850800 11877000 11707000 9936900 10611000 6 6 5 6 6 6 6 6 6 6 6 4116700 6657000 14362 6836300 9336800 10172000 5738900 6698300 6587600 5888000 6335300 3833200 6212400 427030 7011400 8862900 10079000 6035600 6961500 6655600 5783900 6119200 3 3 2 3 3 3 3 3 3 3 3 2938800 5178700 56679 5437200 2928700 2735000 2690000 4967900 5083700 4220700 4642200 2736700 4833300 296330 5488200 2805600 3003100 2815200 4916000 5051400 4153000 4491800 3 3 3 3 3 3 3 3 3 3 3 2373700000 1594900000 778750000 14374 844;260 13167 75360;75361;75362;75363;75364;75365 90988;90989;90990;90991;90992;90993 90990 207 6 NIPGPHMVLVPK Unmodified 1300.7326 0.73256269 260;844 P28370-2;P28370;O60264 SMARCA1;SMARCA5 Probable global transcription activator SNF2L1;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 no no 0 0 0 0 By MS/MS By MS/MS 3.75 2.49 2 1 1 2 2 51.193 51.024 3 1.3712E-07 15979 20211116_3429_TMUAki_TMT10x_P_F2 131.43 94.321 13801000 21620000 45383 24773000 19588000 18902000 15071000 14638000 14063000 13873000 18691000 12849000 20185000 1164500 24962000 18664000 19522000 15492000 15075000 14515000 13581000 17887000 6 6 2 6 6 6 6 6 6 6 6 6720100 10186000 0 12026000 12848000 13305000 9341300 6342700 5904300 6144600 8793100 6256400 9511400 553040 12158000 12225000 13319000 9552200 6794300 6259500 6009300 8393000 3 3 0 3 3 3 3 3 3 3 3 7080500 11434000 45383 12747000 6739500 5596500 5729600 8295400 8158600 7728400 9898100 6592900 10674000 611440 12805000 6438600 6203100 5939700 8281000 8255400 7571300 9494500 3 3 2 3 3 3 3 3 3 3 3 1227000000 954770000 272220000 14375 844;260 13167 75366;75367;75368;75369 90994;90995;90996;90997;90998;90999;91000 90994 7 NIPMTLELLQSTR Unmodified 1514.8127 0.81266351 776 P23193 TCEA1 Transcription elongation factor A protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.2 3.43 2 3 3 2 75.111 75.081 2;3 1.5942E-13 26251 20211116_3439_TMUAki_TMT10x_S_F1 160.38 99.943 23228000 39244000 300380 36350000 25698000 33653000 28764000 18227000 17351000 19882000 26967000 21629000 36608000 2116500 37247000 24728000 34103000 28663000 19360000 18493000 19350000 25717000 8 8 6 8 8 8 8 8 8 8 8 15679000 25770000 227220 24104000 16075000 25687000 19210000 11599000 11366000 12696000 17442000 14599000 24040000 1393400 24732000 15498000 25754000 19079000 12537000 12122000 12354000 16637000 5 5 3 5 5 5 5 5 5 5 5 7548800 13474000 73165 12245000 9623500 7966300 9553800 6627500 5985600 7186100 9525500 7029200 12568000 723090 12515000 9230200 8349400 9584000 6822700 6371100 6995300 9079300 3 3 3 3 3 3 3 3 3 3 3 1957300000 991160000 966090000 14376 776 13168 75370;75371;75372;75373;75374 91001;91002;91003;91004;91005;91006;91007;91008 91006 8 NIPMTLELLQSTR Oxidation (M) 1530.8076 0.80757813 776 P23193 TCEA1 Transcription elongation factor A protein 1 yes yes 0 0 1 0 By MS/MS By MS/MS 7.67 0.471 2 4 4 2 68.054 68.16 2;3 2.0463E-06 22714 20211116_3435_TMUAki_TMT10x_P_F7 119.05 82.277 23610000 40346000 231970 36465000 26231000 43009000 29035000 33652000 32337000 30802000 31962000 21984000 37632000 2092800 37572000 25229000 43201000 29407000 34602000 32739000 30201000 30844000 9 9 2 9 9 9 9 9 9 9 9 16117000 27819000 231970 24535000 17403000 34629000 20297000 22618000 22033000 21225000 21914000 15007000 25945000 1475300 25412000 16768000 34385000 20490000 23561000 22335000 20787000 21143000 6 6 2 6 6 6 6 6 6 6 6 7493900 12527000 0 11930000 8828400 8380200 8738400 11034000 10303000 9577100 10049000 6977400 11687000 617490 12160000 8461300 8815800 8916900 11041000 10404000 9413500 9701600 3 3 0 3 3 3 3 3 3 3 3 3282200000 2094300000 1187900000 14377 776 13168 75375;75376;75377;75378;75379;75380 91009;91010;91011;91012;91013;91014;91015;91016;91017;91018 91009 904 10 NIPPQLR Unmodified 836.48684 0.48683634 3032 Q9NZI8;Q9NZI8-2 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.92 0.759 4 5 3 5 7 35.118 35.49 2 0.014207 9992 20211116_3446_TMUAki_TMT10x_S_F7 94.163 1.9726 4922800 7774800 27298 8134800 6845700 5915300 5437200 4195000 4674100 4087300 6226200 4583700 7256000 442700 8240200 6529100 6124400 5565200 4348800 4843600 3996300 5958200 13 13 6 13 13 13 13 13 13 13 13 1850500 2806300 1408.7 2888000 3666900 3406600 2125600 1637700 1838700 1571900 2286100 1722900 2618900 166700 2948200 3476400 3398700 2227800 1752400 1899000 1538000 2191500 5 5 1 5 5 5 5 5 5 5 5 3072300 4968500 25890 5246800 3178900 2508700 3311600 2557300 2835400 2515400 3940100 2860800 4637100 276000 5292000 3052700 2725700 3337400 2596400 2944600 2458400 3766700 8 8 5 8 8 8 8 8 8 8 8 174930000 97198000 77729000 14378 3032 13169 75381;75382;75383;75384;75385;75386;75387;75388;75389;75390;75391;75392 91019;91020;91021;91022;91023;91024;91025;91026;91027;91028;91029;91030;91031;91032;91033 91031 15 NIPPYFVALVPQEEELDDQK Unmodified 2343.1634 0.1634431 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 By MS/MS By MS/MS 3.91 1.53 1 3 6 4 4 3 1 12 10 80.981 80.962 2;3;4 8.3168E-25 26311 20211116_3431_TMUAki_TMT10x_P_F4 172.97 156.83 123310000 194030000 2148500 200460000 126760000 149420000 141230000 87153000 84471000 100470000 137960000 114830000 181080000 11402000 203290000 122030000 153970000 140740000 92152000 90317000 97572000 131430000 22 22 14 22 22 22 22 22 22 22 22 65945000 101320000 1492700 104000000 54198000 94437000 65089000 44960000 44352000 50535000 69769000 61411000 94557000 6572000 105770000 52324000 95684000 64811000 48376000 46929000 49125000 66517000 14 14 10 14 14 14 14 14 14 14 14 57363000 92706000 655770 96458000 72560000 54983000 76144000 42193000 40120000 49931000 68188000 53415000 86518000 4829800 97517000 69702000 58284000 75934000 43776000 43387000 48446000 64909000 8 8 4 8 8 8 8 8 8 8 8 40609000000 19101000000 21508000000 14379 647 13170 75393;75394;75395;75396;75397;75398;75399;75400;75401;75402;75403;75404;75405;75406;75407;75408;75409;75410;75411;75412;75413;75414 91034;91035;91036;91037;91038;91039;91040;91041;91042;91043;91044;91045;91046;91047;91048;91049;91050;91051;91052;91053;91054;91055;91056;91057;91058 91043 25 NIPVYECER Unmodified 1178.539 0.53900784 347 O75569;O75569-3;O75569-2 PRKRA Interferon-inducible double-stranded RNA-dependent protein kinase activator A yes no 0 0 0 0 By MS/MS 4 0 1 1 36.987 37.119 2 0.0020695 9650 20211116_3442_TMUAki_TMT10x_S_F4 82.645 41.216 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14380 347 13171 75415 91059 91059 1 NIQFEAFHVFK Unmodified 1378.7034 0.70337105 3263 Q9Y376 CAB39 Calcium-binding protein 39 yes yes 0 0 0 0 By MS/MS 1 0 1 1 65.085 65.085 3 2.0716E-07 20199 20211116_3428_TMUAki_TMT10x_P_F1 138.24 113.44 1958900 3075700 0 3006800 2104400 3802800 2352100 1819000 1679900 1949800 2405500 1823800 2869700 148070 3084200 2023000 3780300 2352100 1953500 1764200 1898900 2298000 1 1 0 1 1 1 1 1 1 1 1 1958900 3075700 0 3006800 2104400 3802800 2352100 1819000 1679900 1949800 2405500 1823800 2869700 148070 3084200 2023000 3780300 2352100 1953500 1764200 1898900 2298000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 217220000 217220000 0 14381 3263 13172 75416 91060 91060 1 NIQVSHQEFSK Unmodified 1315.6521 0.65206377 2301 Q8WUM4;Q8WUM4-2 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 By MS/MS 5 0 1 1 36.409 36.381 3 0.00048053 9255 20211116_3433_TMUAki_TMT10x_P_F5 82.85 67.878 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14382 2301 13173 75417 91061 91061 1 NIQVVVR Unmodified 826.50249 0.5024864 1184 P52732 KIF11 Kinesin-like protein KIF11 yes yes 0 0 0 0 By MS/MS By MS/MS 5.43 2.61 1 1 2 1 2 3 4 36.171 36.372 2 0.0026017 9978 20211116_3435_TMUAki_TMT10x_P_F7 123.99 70.279 2901600 4572200 38789 4736800 3269300 3151100 2799900 2641700 2533200 2510100 3504200 2702000 4267000 281790 4797000 3125300 3296500 2856400 2707600 2623300 2456900 3350300 9 9 8 9 9 9 9 9 9 9 9 1158200 1797500 9316.6 1740700 1680000 1744000 1178500 997670 970250 1002300 1341500 1078500 1677100 112020 1779900 1598800 1759700 1215200 1052200 1009300 978680 1282600 4 4 4 4 4 4 4 4 4 4 4 1743400 2774700 29473 2996100 1589300 1407100 1621500 1644000 1563000 1507800 2162700 1623500 2589900 169770 3017100 1526400 1536800 1641200 1655500 1613900 1478200 2067700 5 5 4 5 5 5 5 5 5 5 5 104690000 44834000 59861000 14383 1184 13174 75418;75419;75420;75421;75422;75423;75424 91062;91063;91064;91065;91066;91067;91068;91069;91070 91064 9 NIRDDEGFIIR Unmodified 1346.6943 0.69426293 3180 Q9UM54-6;Q9UM54;Q9UM54-5;Q9UM54-4;Q9UM54-2;Q9UM54-1 MYO6 Unconventional myosin-VI yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 45.254 45.093 3 1.2845E-14 15121 20211116_3441_TMUAki_TMT10x_S_F3 186.58 114.29 2960800 4894300 16677 5219700 5178400 5249800 3611900 4945700 4661200 4059700 4978800 2756800 4568200 271190 5302400 4925500 5339500 3778100 5017300 4707300 4001400 4793100 3 3 1 3 3 3 3 3 3 3 3 1731800 2664800 16677 2871300 3946600 4207600 2556800 2678000 2499100 2180400 2793900 1612500 2487300 184960 2934600 3750000 4169600 2664400 2785100 2555400 2150000 2686100 2 2 1 2 2 2 2 2 2 2 2 1229100 2229500 0 2348300 1231700 1042200 1055100 2267700 2162100 1879300 2184900 1144300 2080800 86224 2367800 1175600 1169900 1113700 2232200 2151900 1851400 2107000 1 1 0 1 1 1 1 1 1 1 1 416510000 244770000 171740000 14384 3180 13175 75425;75426;75427;75428 91071;91072;91073 91073 3 NIRDNEEK Unmodified 1016.4887 0.48868683 2381;134 Q92973;Q92973-2;Q92973-3;O14787-2;O14787 TNPO1;TNPO2 Transportin-1;Transportin-2 no no 0 0 0 1 By MS/MS 3 0 1 1 27.31 27.027 3 0.043796 7939 20211116_3441_TMUAki_TMT10x_S_F3 51.949 28.426 91179 144020 274.39 123260 112850 91208 108030 77027 88754 63699 91623 84898 134310 8118.6 126730 108100 94575 109240 78632 91238 62761 88297 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 91179 144020 274.39 123260 112850 91208 108030 77027 88754 63699 91623 84898 134310 8118.6 126730 108100 94575 109240 78632 91238 62761 88297 1 1 1 1 1 1 1 1 1 1 1 2975500 0 2975500 14385 2381;134 13176 75429 91074 91074 1 NIREFEEEK Unmodified 1192.5724 0.57241646 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 1 By MS/MS 3 0 1 1 39.062 38.79 3 0.00036425 12541 20211116_3441_TMUAki_TMT10x_S_F3 114.89 84.576 514020 803730 0 930530 538480 455060 462720 771370 858990 569760 827720 478600 750440 42336 933230 514370 500020 485580 762280 855430 564760 799440 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 514020 803730 0 930530 538480 455060 462720 771370 858990 569760 827720 478600 750440 42336 933230 514370 500020 485580 762280 855430 564760 799440 1 1 0 1 1 1 1 1 1 1 1 32860000 0 32860000 14386 1723 13177 75430 91075 91075 1 NISAISYINQR Unmodified 1277.6728 0.67279921 2339 Q92541 RTF1 RNA polymerase-associated protein RTF1 homolog yes yes 0 0 0 0 By MS/MS 1 0 1 1 50.221 49.959 2 7.7795E-18 16060 20211116_3439_TMUAki_TMT10x_S_F1 199.33 165.26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14387 2339 13178 75431 91076 91076 1 NISELFYYAQK Unmodified 1374.682 0.68196691 2156;2157 Q8IXI1;Q8IXI1-2;Q8IXI2-6;Q8IXI2;Q8IXI2-3;Q8IXI2-4;Q8IXI2-5;Q8IXI2-2;Q8IXI2-7 RHOT2;RHOT1 Mitochondrial Rho GTPase 2;Mitochondrial Rho GTPase 1 no no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 1 1 1 1 76.52 76.482 3 1.1328E-07 24787 20211116_3428_TMUAki_TMT10x_P_F1 114.86 90.481 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14388 2156;2157 13179 75432;75433 91077;91078 91077 2 NISFTVWDVGGQDK Unmodified 1564.7522 0.75217174 1301 P61204;P84077 ARF3;ARF1 ADP-ribosylation factor 3;ADP-ribosylation factor 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.38 0.696 1 3 4 3 5 73.498 73.552 2;3 3.0242E-23 25510 20211116_3446_TMUAki_TMT10x_S_F7 188.09 146.69 31768000 53892000 233700 54785000 36020000 41252000 42252000 22321000 20126000 25235000 39221000 29581000 50290000 2842600 55624000 34704000 42434000 41848000 23737000 22121000 24526000 37244000 7 7 5 7 7 7 7 7 7 7 7 16706000 27591000 104120 27435000 19532000 27950000 22948000 12872000 12022000 14228000 20472000 15555000 25744000 1493800 28007000 18818000 28103000 22760000 13889000 13008000 13840000 19487000 4 4 3 4 4 4 4 4 4 4 4 15062000 26301000 129580 27350000 16489000 13302000 19305000 9448900 8104600 11007000 18749000 14025000 24545000 1348800 27617000 15886000 14331000 19088000 9848000 9112900 10686000 17757000 3 3 2 3 3 3 3 3 3 3 3 3047400000 1767700000 1279700000 14389 1301 13180 75434;75435;75436;75437;75438;75439;75440;75441 91079;91080;91081;91082;91083;91084;91085;91086;91087;91088 91086 10 NISGSVTLK Unmodified 917.5182 0.51819605 3039 Q9NZW5 MPP6 MAGUK p55 subfamily member 6 yes yes 0 0 0 0 By MS/MS 8 0 1 1 43.208 43.219 2 0.002129 10871 20211116_3447_TMUAki_TMT10x_S_F8 89.171 43.491 960260 1559700 0 1437700 1039400 948460 1072100 1222000 1221200 1210000 1338400 894040 1454900 73532 1468000 996990 1002500 1090400 1228300 1240000 1182200 1287500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 960260 1559700 0 1437700 1039400 948460 1072100 1222000 1221200 1210000 1338400 894040 1454900 73532 1468000 996990 1002500 1090400 1228300 1240000 1182200 1287500 1 1 0 1 1 1 1 1 1 1 1 29357000 0 29357000 14390 3039 13181 75442 91089 91089 1 NISMSVEGDYTYLR Oxidation (M) 1662.7559 0.75593649 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 1 0 By MS/MS By MS/MS 3.8 0.748 4 4 2 5 5 53.537 53.507 2;3 1.8245E-25 15783 20211116_3431_TMUAki_TMT10x_P_F4 199.27 176.94 14883000 26940000 176390 28971000 22171000 27815000 20022000 23102000 21317000 20617000 22498000 13858000 25145000 1373800 29394000 21207000 28302000 20462000 23652000 21672000 20238000 21666000 9 9 5 9 9 9 9 9 9 9 9 9023800 15855000 75456 17219000 15705000 22113000 13064000 13472000 12404000 11986000 12919000 8401900 14800000 833400 17543000 14992000 22031000 13369000 14089000 12667000 11767000 12446000 5 5 2 5 5 5 5 5 5 5 5 5859100 11085000 100940 11752000 6465900 5702200 6958800 9629400 8912700 8631500 9579200 5455800 10346000 540390 11851000 6215200 6270400 7093400 9562500 9005300 8471100 9220100 4 4 3 4 4 4 4 4 4 4 4 3453600000 2149900000 1303700000 14391 3317 13182 75443;75444;75445;75446;75447;75448;75449;75450;75451;75452 91090;91091;91092;91093;91094;91095;91096;91097;91098 91092 3282 9 NISSAQIVGPGPKPEASAK Unmodified 1849.9898 0.98977625 1213 P53990;P53990-2;P53990-4;P53990-5;P53990-6 IST1 IST1 homolog yes no 0 0 0 1 By MS/MS By MS/MS 7.71 0.452 2 5 4 3 43.909 44.13 3;4 2.2626E-31 11242 20211116_3447_TMUAki_TMT10x_S_F8 184.56 166.81 5888900 9780700 56279 11245000 9874600 7920800 6343600 6630400 8322100 5823100 9170900 5483600 9131900 593480 11319000 9382700 8245300 6680400 6782300 8409800 5720400 8820600 5 5 4 5 5 5 5 5 5 5 5 2479800 3999300 15292 4590100 6613000 5284400 3149200 2893300 3288400 2382300 3840900 2309100 3734000 277730 4651400 6254700 5286800 3379800 3047100 3358900 2347700 3688100 1 1 1 1 1 1 1 1 1 1 1 3409100 5781400 40987 6655000 3261700 2636400 3194400 3737100 5033700 3440800 5330000 3174500 5397900 315750 6667400 3128000 2958400 3300600 3735200 5050900 3372700 5132500 4 4 3 4 4 4 4 4 4 4 4 650890000 466180000 184720000 14392 1213 13183 75453;75454;75455;75456;75457;75458;75459 91099;91100;91101;91102;91103;91104 91102 6 NITHFGPTTLR Unmodified 1255.6673 0.6673199 2683 Q9BV44 THUMPD3 THUMP domain-containing protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 39.047 38.787 3 1.0587E-05 11049 20211116_3429_TMUAki_TMT10x_P_F2 105.65 81.494 1107300 1751700 7405.6 1982600 2535100 2429600 1419900 1333700 1490000 1297100 1536000 1031000 1635400 111640 2013000 2402700 2422900 1500700 1410200 1514400 1268300 1480300 2 2 1 2 2 2 2 2 2 2 2 1107300 1751700 7405.6 1982600 2535100 2429600 1419900 1333700 1490000 1297100 1536000 1031000 1635400 111640 2013000 2402700 2422900 1500700 1410200 1514400 1268300 1480300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 145610000 134640000 10968000 14393 2683 13184 75460;75461;75462;75463 91105;91106;91107;91108 91106 4 NITLDDASAPR Unmodified 1171.5833 0.5833155 346 O75534;O75534-2;O75534-3;O75534-4 CSDE1 Cold shock domain-containing protein E1 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 39.432 39.302 2 2.526E-07 11454 20211116_3430_TMUAki_TMT10x_P_F3 139.98 106.19 1164100 1748800 15511 2090000 1524800 1218500 1139900 1018200 1119200 872680 1552000 1084000 1633100 116020 2095000 1453300 1290500 1175800 1040900 1154900 858300 1483800 3 3 3 3 3 3 3 3 3 3 3 377820 522970 4223.5 617310 829590 630200 432820 358960 360280 279220 491260 351820 488340 41587 623290 785730 635120 457530 376270 374350 275980 469840 2 2 2 2 2 2 2 2 2 2 2 786290 1225900 11287 1472700 695230 588260 707110 659200 758950 593460 1060700 732190 1144800 74433 1471700 667600 655430 718240 664680 780540 582310 1013900 1 1 1 1 1 1 1 1 1 1 1 53696000 19180000 34515000 14394 346 13185 75464;75465;75466 91109;91110;91111;91112 91110 4 NITLNFGPQHPAAHGVLR Unmodified 1941.0333 0.033312819 318 O75306;O75306-2 NDUFS2 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 3 0.756 2 3 2 3 4 44.715 44.624 3;4 1.5456E-40 14924 20211116_3441_TMUAki_TMT10x_S_F3 202.33 170.8 4348000 6814400 87599 7724500 6281100 6108400 4441900 4843300 4696400 4352300 5967600 4049000 6361900 454500 7791800 5980800 6294100 4609700 4973500 4811800 4270900 5717400 7 7 6 7 7 7 7 7 7 7 7 2194100 3356200 47322 3894500 4102000 4185300 2597000 2559800 2241000 2242700 3149300 2043300 3133700 252730 3939300 3898200 4209200 2701900 2675100 2327700 2203400 3009900 3 3 3 3 3 3 3 3 3 3 3 2153900 3458200 40277 3830100 2179200 1923100 1845000 2283600 2455400 2109600 2818300 2005700 3228200 201780 3852500 2082600 2084800 1907800 2298400 2484100 2067500 2707500 4 4 3 4 4 4 4 4 4 4 4 3057100000 1758600000 1298500000 14395 318 13186 75467;75468;75469;75470;75471;75472;75473 91113;91114;91115;91116;91117;91118;91119 91117 7 NITRPFEDQTSLEFFSK Unmodified 2058.0058 0.0058202445 2823 Q9H7B2 RPF2 Ribosome production factor 2 homolog yes yes 0 0 0 1 By MS/MS By MS/MS 7.2 0.748 1 2 2 2 3 68.45 68.596 3 1.3535E-21 21686 20211116_3436_TMUAki_TMT10x_P_F8 169.43 125.83 72123000 124220000 488960 109060000 90208000 110620000 86115000 95251000 83990000 90106000 98313000 67153000 115850000 6206600 112350000 86391000 112250000 87498000 97466000 86047000 88214000 94395000 11 11 6 11 11 11 11 11 11 11 11 31436000 51111000 213660 45552000 34278000 64189000 39775000 37530000 34455000 37634000 42114000 29270000 47672000 2636000 47141000 33004000 63643000 39893000 39506000 35556000 36751000 40389000 5 5 3 5 5 5 5 5 5 5 5 40687000 73108000 275300 63507000 55930000 46428000 46340000 57721000 49535000 52471000 56199000 37883000 68181000 3570600 65211000 53386000 48605000 47605000 57959000 50490000 51462000 54007000 6 6 3 6 6 6 6 6 6 6 6 5394700000 2410400000 2984300000 14396 2823 13187 75474;75475;75476;75477;75478 91120;91121;91122;91123;91124;91125;91126;91127;91128;91129;91130 91123 11 NITVREEEKLELQK Unmodified 1727.9418 0.94176342 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 2 By MS/MS By MS/MS 4.67 0.471 2 4 4 2 45.114 45.267 3;4 3.1149E-23 12882 20211116_3442_TMUAki_TMT10x_S_F4 184.99 146.37 50974000 89926000 629340 85501000 74987000 82095000 61431000 66912000 63724000 60478000 73549000 47466000 83894000 5022500 87487000 71590000 83502000 63092000 68605000 65077000 59331000 70646000 9 9 6 9 9 9 9 9 9 9 9 25905000 44437000 468240 42227000 43308000 56720000 34142000 34357000 33140000 31412000 36440000 24124000 41456000 2822000 43452000 41324000 56386000 35080000 35973000 33875000 30800000 35051000 5 5 4 5 5 5 5 5 5 5 5 25069000 45489000 161100 43274000 31679000 25374000 27289000 32555000 30584000 29067000 37108000 23342000 42438000 2200500 44036000 30267000 27115000 28012000 32633000 31202000 28532000 35595000 4 4 2 4 4 4 4 4 4 4 4 5034100000 3022800000 2011200000 14397 352 13188 75479;75480;75481;75482;75483;75484 91131;91132;91133;91134;91135;91136;91137;91138;91139;91140;91141 91138 11 NITYEELR Unmodified 1036.5189 0.51892433 2998 Q9NX40 OCIAD1 OCIA domain-containing protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 40.671 40.725 2 0.0010327 12156 20211116_3430_TMUAki_TMT10x_P_F3 129.42 53.567 375920 534810 19191 743940 1179900 858980 520250 489110 527250 359110 570820 350160 499820 60311 745890 1115900 859670 562420 512070 537620 356080 549300 1 1 1 1 1 1 1 1 1 1 1 375920 534810 19191 743940 1179900 858980 520250 489110 527250 359110 570820 350160 499820 60311 745890 1115900 859670 562420 512070 537620 356080 549300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 74986000 74986000 0 14398 2998 13189 75485;75486;75487 91142;91143;91144 91142 3 NITYLPAGQSVLLQLPQ Unmodified 1854.0251 0.025099124 924 P35232 PHB Prohibitin yes yes 0 0 0 0 By MS/MS By MS/MS 3.86 2.94 7 6 1 4 4 9 13 74.7 74.695 2;3 3.389E-29 26430 20211116_3428_TMUAki_TMT10x_P_F1 191.26 176.57 34030000 55460000 483310 53110000 38376000 48340000 41870000 28920000 28170000 30911000 41425000 31687000 51742000 2928200 54276000 36898000 49104000 41864000 30444000 29728000 30107000 39551000 34 34 19 34 34 34 34 34 34 34 34 16510000 24937000 283970 25294000 15209000 29246000 17837000 13564000 13164000 14857000 19325000 15374000 23270000 1363300 25838000 14660000 29198000 17810000 14621000 13815000 14457000 18452000 11 11 6 11 11 11 11 11 11 11 11 17520000 30523000 199340 27816000 23167000 19094000 24033000 15356000 15006000 16053000 22100000 16313000 28471000 1564900 28438000 22238000 19906000 24053000 15823000 15913000 15650000 21099000 23 23 13 23 23 23 23 23 23 23 23 40873000000 22499000000 18374000000 14399 924 13190 75488;75489;75490;75491;75492;75493;75494;75495;75496;75497;75498;75499;75500;75501;75502;75503;75504;75505;75506;75507;75508;75509 91145;91146;91147;91148;91149;91150;91151;91152;91153;91154;91155;91156;91157;91158;91159;91160;91161;91162;91163;91164;91165;91166;91167;91168;91169;91170;91171;91172;91173;91174;91175;91176;91177;91178;91179;91180 91146 36 NIVEAAAVR Unmodified 941.52943 0.52942943 1373 P62854;Q5JNZ5 RPS26;RPS26P11 40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.2 2.1 2 2 2 2 2 3 1 1 7 8 36.061 36.125 2 1.4765E-06 9080 20211116_3442_TMUAki_TMT10x_S_F4 195.45 130.69 41757000 66339000 274120 64519000 61071000 61971000 44643000 41310000 42303000 38907000 52801000 38880000 61894000 3711400 65911000 58143000 62825000 46070000 42972000 43511000 38098000 50610000 27 27 11 27 27 27 27 27 27 27 27 27403000 42797000 207350 41890000 46629000 50987000 30626000 27537000 28518000 25901000 34971000 25516000 39931000 2592500 42935000 44311000 50854000 31837000 29132000 29333000 25364000 33536000 11 11 6 11 11 11 11 11 11 11 11 14353000 23542000 66766 22629000 14442000 10984000 14017000 13773000 13785000 13006000 17830000 13364000 21963000 1118900 22976000 13832000 11971000 14233000 13840000 14178000 12734000 17075000 16 16 5 16 16 16 16 16 16 16 16 7317800000 5027600000 2290200000 14400 1373 13191 75510;75511;75512;75513;75514;75515;75516;75517;75518;75519;75520;75521;75522;75523;75524 91181;91182;91183;91184;91185;91186;91187;91188;91189;91190;91191;91192;91193;91194;91195;91196;91197;91198;91199;91200;91201;91202;91203;91204;91205;91206;91207;91208 91201 28 NIVLSGGSTMFR Unmodified 1280.6547 0.6547063 1296 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 57.503 57.185 2 5.7129E-24 20055 20211116_3441_TMUAki_TMT10x_S_F3 245.13 198.06 7707000 13508000 30875 13080000 9299000 8659000 8165200 6787200 5921000 7010200 10135000 7176000 12603000 661880 13308000 8887900 9051800 8272100 7001900 6271300 6837300 9646000 3 3 1 3 3 3 3 3 3 3 3 2645300 4453700 0 4166200 3537600 4429000 3219600 2248100 2217300 2495700 3180300 2462800 4154700 207890 4274500 3382500 4446800 3251300 2403200 2333800 2427200 3038100 1 1 0 1 1 1 1 1 1 1 1 5061800 9054500 30875 8913400 5761400 4230000 4945600 4539000 3703700 4514500 6954300 4713200 8448300 453990 9033100 5505400 4605000 5020800 4598600 3937600 4410100 6607900 2 2 1 2 2 2 2 2 2 2 2 702250000 441740000 260510000 14401 1296 13192 75525;75526;75527 91209;91210;91211;91212 91211 4 NIVLSGGSTMFR Oxidation (M) 1296.6496 0.64962092 1296 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 1 0 By matching By MS/MS 2 0 2 1 1 47.879 47.698 2 0.022297 13332 20211116_3440_TMUAki_TMT10x_S_F2 61.213 43.827 3462200 5945800 152500 7480700 2178700 2257700 1646100 7159700 6770000 5231500 6183800 3224800 5553800 411190 7445000 2084900 2732300 1856200 6974400 6642300 5188800 5983500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3462200 5945800 152500 7480700 2178700 2257700 1646100 7159700 6770000 5231500 6183800 3224800 5553800 411190 7445000 2084900 2732300 1856200 6974400 6642300 5188800 5983500 1 1 1 1 1 1 1 1 1 1 1 299140000 84291000 214850000 14402 1296 13192 75528;75529 91213 91213 1749 1 NIVSAFGIIPR Unmodified 1185.687 0.68699271 2537 Q96PZ0;Q96PZ0-2 PUS7 Pseudouridylate synthase 7 homolog yes no 0 0 0 0 By MS/MS By MS/MS 4 0.707 1 2 1 1 3 71.65 71.494 2 0.00022388 23612 20211116_3442_TMUAki_TMT10x_S_F4 96.957 63.314 22049000 38293000 0 29718000 26607000 50131000 25881000 45850000 43515000 37058000 34683000 20527000 35700000 1570600 31228000 25473000 49715000 26836000 46570000 43184000 36555000 33731000 3 3 0 3 3 3 3 3 3 3 3 11208000 18763000 0 14284000 13248000 34851000 13893000 22835000 21188000 18243000 16656000 10434000 17491000 745680 15196000 12705000 33965000 14285000 23686000 21075000 18006000 16208000 1 1 0 1 1 1 1 1 1 1 1 10842000 19530000 0 15434000 13359000 15280000 11988000 23016000 22327000 18815000 18027000 10094000 18209000 824890 16032000 12768000 15749000 12551000 22885000 22109000 18549000 17523000 2 2 0 2 2 2 2 2 2 2 2 1531900000 686090000 845790000 14403 2537 13193 75530;75531;75532;75533 91214;91215;91216;91217 91216 4 NIYVLQELDNPGAK Unmodified 1572.8148 0.814772 647 P12956 XRCC6 X-ray repair cross-complementing protein 6 yes yes 0 0 0 0 By MS/MS By MS/MS 5.22 1.31 2 4 4 4 4 10 8 68.726 68.766 2;3 1.9016E-116 21501 20211116_3445_TMUAki_TMT10x_S_F6 389.67 338.39 212510000 356030000 1961600 314480000 330520000 503870000 288920000 428200000 269330000 237360000 326840000 197830000 332060000 15262000 326590000 315610000 499930000 294630000 433470000 276900000 239680000 313510000 22 22 12 22 22 22 22 22 22 22 22 152210000 250580000 541700 210900000 248030000 444970000 224600000 348900000 197100000 168060000 242890000 141680000 233670000 8765100 221460000 236900000 436710000 228200000 354180000 203350000 171590000 232890000 10 10 5 10 10 10 10 10 10 10 10 60292000 105450000 1419900 103580000 82489000 58905000 64317000 79293000 72229000 69297000 83948000 56148000 98390000 6497400 105130000 78714000 63222000 66434000 79291000 73550000 68091000 80619000 12 12 7 12 12 12 12 12 12 12 12 36623000000 18226000000 18397000000 14404 647 13194 75534;75535;75536;75537;75538;75539;75540;75541;75542;75543;75544;75545;75546;75547;75548;75549;75550;75551 91218;91219;91220;91221;91222;91223;91224;91225;91226;91227;91228;91229;91230;91231;91232;91233;91234;91235;91236;91237;91238;91239;91240;91241 91237 24 NIYVLQELDNPGAKR Unmodified 1728.9159 0.91588303 647 P12956 XRCC6 X-ray repair cross-complementing protein 6 yes yes 0 0 0 1 By MS/MS By MS/MS 6.62 0.857 1 2 4 1 4 4 57.931 58.295 3;4 1.1023E-23 19151 20211116_3446_TMUAki_TMT10x_S_F7 182.52 150.24 72299000 120120000 2938700 120690000 103340000 139310000 93903000 129720000 91768000 99469000 99289000 67339000 112090000 9167500 123360000 99027000 140560000 95677000 131470000 93718000 98393000 95548000 10 10 10 10 10 10 10 10 10 10 10 44666000 73537000 2096700 75117000 69241000 111720000 67828000 74276000 62896000 61993000 67077000 41604000 68623000 6001400 77067000 66483000 110710000 68722000 77041000 64350000 61052000 64577000 6 6 6 6 6 6 6 6 6 6 6 27633000 46582000 841960 45568000 34097000 27595000 26075000 55449000 28871000 37475000 32212000 25735000 43462000 3166200 46290000 32544000 29846000 26955000 54433000 29368000 37341000 30971000 4 4 4 4 4 4 4 4 4 4 4 11669000000 6105200000 5563400000 14405 647 13195 75552;75553;75554;75555;75556;75557;75558;75559 91242;91243;91244;91245;91246;91247;91248;91249;91250;91251 91250 10 NKAPAEVQITAEQLLR Unmodified 1779.9843 0.98429694 2740 Q9BZJ0;Q9BZJ0-2;Q9BZJ0-3 CRNKL1 Crooked neck-like protein 1 yes no 0 0 0 1 By MS/MS 7 0 1 1 57.208 57.73 3 4.1849E-15 18973 20211116_3446_TMUAki_TMT10x_S_F7 149.73 120.76 2275700 4574300 33052 3554700 2888500 2819300 2628700 4029300 3757500 3672000 3929800 2119100 4264500 228060 3687400 2765100 2944700 2714900 4024900 3779400 3601000 3785600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2275700 4574300 33052 3554700 2888500 2819300 2628700 4029300 3757500 3672000 3929800 2119100 4264500 228060 3687400 2765100 2944700 2714900 4024900 3779400 3601000 3785600 1 1 1 1 1 1 1 1 1 1 1 887600000 0 887600000 14406 2740 13196 75560 91252 91252 1 NKDGVLVDEFGLPQIPAS Unmodified 1897.9785 0.97854286 3040 Q9NZZ3 CHMP5 Charged multivesicular body protein 5 yes yes 0 0 0 1 By MS/MS By MS/MS 5.14 0.99 1 3 3 3 4 77.859 77.838 2;3 7.568E-05 26075 20211116_3433_TMUAki_TMT10x_P_F5 79.027 65.123 12212000 21507000 450580 19268000 16720000 18255000 16039000 13570000 12102000 14058000 16343000 11374000 20060000 1495500 19799000 16042000 18554000 16183000 14048000 12635000 13710000 15634000 4 4 4 4 4 4 4 4 4 4 4 2878900 4970500 183660 4813800 2943100 5993900 3543500 3212100 2846500 3512100 3777200 2681900 4637400 410740 4939600 2848200 5970900 3541300 3415200 2959300 3417700 3614900 1 1 1 1 1 1 1 1 1 1 1 9332900 16537000 266930 14454000 13777000 12261000 12496000 10358000 9255800 10546000 12566000 8691900 15423000 1084800 14860000 13194000 12584000 12642000 10633000 9675400 10292000 12019000 3 3 3 3 3 3 3 3 3 3 3 3029900000 773040000 2256900000 14407 3040 13197 75561;75562;75563;75564;75565;75566;75567 91253;91254;91255;91256;91257;91258;91259 91253 7 NKDQGTYEDYVEGLR Unmodified 1785.817 0.81695684 1275 P60660;P60660-2 MYL6 Myosin light polypeptide 6 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 1.12 2 2 2 2 4 4 47.905 47.972 3 2.8915E-34 13959 20211116_3442_TMUAki_TMT10x_S_F4 235.78 217.85 51489000 99136000 427800 96122000 82228000 98207000 59118000 114220000 115880000 94138000 99010000 47944000 92493000 5006000 98304000 78283000 100280000 62932000 114730000 114810000 92768000 96033000 11 11 7 11 11 11 11 11 11 11 11 20873000 39539000 169480 38884000 61034000 71984000 42672000 45476000 46686000 38148000 38669000 19435000 36892000 2370200 40209000 58066000 70695000 44368000 47356000 47035000 37559000 37551000 5 5 2 5 5 5 5 5 5 5 5 30616000 59597000 258330 57238000 21194000 26223000 16446000 68749000 69195000 55991000 60340000 28509000 55601000 2635800 58095000 20217000 29583000 18563000 67371000 67772000 55209000 58482000 6 6 5 6 6 6 6 6 6 6 6 8940700000 5217400000 3723300000 14408 1275 13198 75568;75569;75570;75571;75572;75573;75574;75575 91260;91261;91262;91263;91264;91265;91266;91267;91268;91269;91270 91266 11 NKEDQYDHLDAADMTK Oxidation (M) 1908.816 0.81597056 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 1 1 By MS/MS 4 0 1 1 35.038 35.063 4 2.1556E-15 8393 20211116_3431_TMUAki_TMT10x_P_F4 155.1 136.96 495390 823240 12398 1050800 3175800 1564700 819130 675160 1004100 581770 884980 461350 769020 90167 1063600 2986600 1542300 959830 728550 1009200 572030 857400 1 1 1 1 1 1 1 1 1 1 1 495390 823240 12398 1050800 3175800 1564700 819130 675160 1004100 581770 884980 461350 769020 90167 1063600 2986600 1542300 959830 728550 1009200 572030 857400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 118930000 118930000 0 14409 916 13199 75576 91271 91271 1156 1 NKEEAAEYAK Unmodified 1151.5459 0.54586736 1365 P62753 RPS6 40S ribosomal protein S6 yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 33.176 33.162 3 0.00018494 7671 20211116_3431_TMUAki_TMT10x_P_F4 112.43 58.902 2778600 4841100 15693 3903300 3911700 4852500 3120000 1959300 2343800 2060100 3350400 2587200 4513700 260860 4062400 3731700 4819900 3182200 2141100 2454100 2007900 3200800 2 2 2 2 2 2 2 2 2 2 2 2778600 4841100 15693 3903300 3911700 4852500 3120000 1959300 2343800 2060100 3350400 2587200 4513700 260860 4062400 3731700 4819900 3182200 2141100 2454100 2007900 3200800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 142030000 142030000 0 14410 1365 13200 75577;75578 91272;91273 91272 2 NKEGSGDGGRAELNPWPEYIYTR Unmodified 2608.2306 0.23062824 819 P26639;P26639-2 TARS Threonine--tRNA ligase, cytoplasmic yes no 0 0 0 2 By MS/MS 6 0 1 1 52.109 52.241 4 0.00088077 14777 20211116_3445_TMUAki_TMT10x_S_F6 62.193 46.601 1270200 2313900 96922 2159500 1782000 1366600 1270300 2493900 2086900 1953000 2207000 1183400 2158500 202810 2202000 1701600 1466400 1340500 2462600 2091600 1929700 2125300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1270200 2313900 96922 2159500 1782000 1366600 1270300 2493900 2086900 1953000 2207000 1183400 2158500 202810 2202000 1701600 1466400 1340500 2462600 2091600 1929700 2125300 1 1 1 1 1 1 1 1 1 1 1 224650000 0 224650000 14411 819 13201 75579 91274 91274 1 NKEIFLR Unmodified 918.5287 0.52870115 672 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 1 By MS/MS By MS/MS 6 2.92 1 1 2 2 2 38.422 38.681 3 0.020727 9425 20211116_3436_TMUAki_TMT10x_P_F8 75.043 35.397 3983000 6379200 50186 6367600 6590600 5074900 4500700 3770900 5438400 3372900 5356000 3708800 5952400 404580 6477500 6269300 5220400 4703600 3887900 5488700 3310500 5169300 4 4 3 4 4 4 4 4 4 4 4 1572700 2497000 36840 2516300 4055900 2979800 1846500 1533100 2091200 1324100 2114400 1464600 2330000 199500 2572600 3835600 2974500 1996100 1625500 2117600 1301800 2039000 2 2 2 2 2 2 2 2 2 2 2 2410300 3882200 13346 3851300 2534800 2095000 2654300 2237800 3347200 2048800 3241600 2244200 3622400 205080 3904900 2433700 2245800 2707500 2262300 3371100 2008700 3130300 2 2 1 2 2 2 2 2 2 2 2 129700000 73858000 55840000 14412 672 13202 75580;75581;75582;75583 91275;91276;91277;91278 91276 4 NKESKDPADETEAD Unmodified 1547.6587 0.65872487 698 P16949 STMN1 Stathmin yes yes 0 0 0 2 By matching By MS/MS 2.5 0.5 1 1 1 1 31.01 30.771 3 0.00021111 9379 20211116_3441_TMUAki_TMT10x_S_F3 92.265 85.536 287740 578610 3412 325280 403250 563510 389870 324490 310130 253690 397060 267940 538960 28654 353290 386530 554000 393690 339870 322080 250690 380340 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 287740 578610 3412 325280 403250 563510 389870 324490 310130 253690 397060 267940 538960 28654 353290 386530 554000 393690 339870 322080 250690 380340 1 1 1 1 1 1 1 1 1 1 1 60228000 19757000 40470000 14413 698 13203 75584;75585 91279 91279 1 NKEVTWEVLEGEVEK Unmodified 1787.8941 0.89414453 509 P05455 SSB Lupus La protein yes yes 0 0 0 1 By MS/MS 2 0 1 1 65.085 64.852 3 0.017733 20379 20211116_3440_TMUAki_TMT10x_S_F2 52.172 44.261 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14414 509 13204 75586 91280 91280 1 NKFEEAER Unmodified 1021.4829 0.48287317 666 P14314;P14314-2 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 1 By MS/MS By MS/MS 2.5 1.12 1 1 1 1 3 1 30.633 30.521 3 0.0013936 9254 20211116_3441_TMUAki_TMT10x_S_F3 107.24 74.019 1420900 2377200 11782 1935400 1973000 2199300 1731300 1271200 1460600 1130600 1809800 1323100 2216600 136510 2009600 1886500 2203400 1760400 1335100 1510100 1110000 1735000 3 3 3 3 3 3 3 3 3 3 3 1073200 1733800 8527.1 1464800 1527300 1783300 1206600 961530 1096500 843270 1334400 999320 1616900 103280 1518100 1456900 1778500 1237300 1015500 1128800 828460 1279900 2 2 2 2 2 2 2 2 2 2 2 347670 643380 3254.8 470620 445740 416060 524660 309640 364030 287350 475400 323740 599690 33231 491500 429580 424830 523090 319520 381320 281560 455150 1 1 1 1 1 1 1 1 1 1 1 73068000 54392000 18676000 14415 666 13205 75587;75588;75589;75590 91281;91282 91282 2 NKFQCGFGLTIG Unmodified 1340.6547 0.6547063 457 O96008 TOMM40 Mitochondrial import receptor subunit TOM40 homolog yes yes 0 0 0 1 By MS/MS By MS/MS 3 0 2 1 1 65.861 65.485 2 0.00086631 22405 20211116_3430_TMUAki_TMT10x_P_F3 104.17 84.924 9808600 17221000 22611 13422000 12916000 15747000 12782000 13022000 10229000 12319000 13449000 9131600 16054000 713280 13995000 12372000 15837000 12893000 13356000 10632000 12060000 12874000 3 3 1 3 3 3 3 3 3 3 3 4005800 6934100 22611 5703400 4732400 9358400 5905000 5817300 4501900 5325300 5544800 3730000 6465700 363360 5960000 4568500 9228700 5885000 6078600 4678300 5221200 5316600 1 1 1 1 1 1 1 1 1 1 1 5802800 10287000 0 7718200 8184100 6388200 6876600 7204700 5727100 6993300 7904200 5401600 9588800 349920 8035400 7803700 6608300 7008000 7277700 5953900 6838800 7557500 2 2 0 2 2 2 2 2 2 2 2 694280000 299040000 395230000 14416 457 13206 75591;75592 91283 91283 1 NKGDSHLNVQVSNFK Unmodified 1685.8485 0.84853174 2105 Q86UE4 MTDH Protein LYRIC yes yes 0 0 0 1 By MS/MS By MS/MS 7.75 0.433 1 3 3 1 38.696 39.019 4 1.5193E-05 9559 20211116_3436_TMUAki_TMT10x_P_F8 100.4 88.252 1572200 2598000 23025 2687500 2926400 2739100 1817400 1876900 1983700 1562800 2179500 1464000 2424500 170770 2736100 2779500 2767900 1906600 1942400 2017700 1539200 2096400 3 3 3 3 3 3 3 3 3 3 3 1094600 1769600 14761 1900200 2439800 2320400 1382700 1202700 1338900 1048800 1496600 1019300 1651700 123350 1935600 2313700 2312800 1456500 1274600 1369600 1030600 1438900 2 2 2 2 2 2 2 2 2 2 2 477500 828440 8264.3 787290 486650 418750 434640 674230 644800 514000 682850 444670 772870 47418 800560 465810 455070 450100 667820 648130 508600 657540 1 1 1 1 1 1 1 1 1 1 1 393140000 208680000 184460000 14417 2105 13207 75593;75594;75595;75596 91284;91285;91286 91284 3 NKHEAMITDLEER Oxidation (M) 1600.7515 0.75151981 934 P35579 MYH9 Myosin-9 yes yes 0 0 1 1 By MS/MS By MS/MS 4 0.816 1 1 1 1 2 31.999 31.982 4 7.639E-05 7078 20211116_3431_TMUAki_TMT10x_P_F4 96.591 79.103 772830 1128700 1524.1 1187700 1110900 1144600 790920 627310 744530 626090 880520 719550 1053400 65203 1206900 1056900 1157100 817560 663880 764280 611520 845200 3 3 1 3 3 3 3 3 3 3 3 561250 772200 1524.1 814160 882160 944890 570660 403700 500180 394250 569590 522590 720700 52447 829560 838120 942370 592950 437480 514400 385440 547310 1 1 1 1 1 1 1 1 1 1 1 211570 356500 0 373570 228760 199690 220260 223620 244350 231830 310940 196960 332710 12756 377300 218810 214690 224610 226400 249890 226080 297890 2 2 0 2 2 2 2 2 2 2 2 263030000 143370000 119660000 14418 934 13208 75597;75598;75599 91287;91288;91289 91287 1179 3 NKHEAMITDLEER Unmodified 1584.7566 0.75660519 934 P35579 MYH9 Myosin-9 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 3 1 35.094 35.141 3;4 1.2324E-06 8509 20211116_3431_TMUAki_TMT10x_P_F4 117.4 98.342 3748900 5411800 40512 7246900 7047700 5303000 3761800 2242100 2493300 2283700 4178500 3490900 5056600 392940 7234400 6677400 5453500 3948300 2435300 2651800 2228700 3978700 4 4 3 4 4 4 4 4 4 4 4 3541700 5067700 38886 6823300 6878900 5164900 3594100 2040900 2302500 2098700 3880500 3298000 4735200 374790 6812100 6515400 5293800 3777400 2234400 2454900 2047300 3694500 3 3 2 3 3 3 3 3 3 3 3 207150 344100 1625.7 423600 168800 138070 167650 201220 190770 184980 298080 192890 321380 18152 422260 161920 159690 170830 200910 196880 181330 284230 1 1 1 1 1 1 1 1 1 1 1 267080000 251380000 15699000 14419 934 13208 75600;75601;75602;75603 91290;91291;91292;91293 91291 4 NKIAGYVTHLMKR Oxidation (M) 1545.845 0.84496669 562 P08708 RPS17 40S ribosomal protein S17 yes yes 0 0 1 2 By MS/MS 6 0 1 1 39.373 39.39 5 0.012614 9229 20211116_3434_TMUAki_TMT10x_P_F6 59.227 46.091 605160 933130 0 1019300 1872400 1737000 904430 1158800 917440 761940 893170 563340 871040 52697 1044500 1770100 1712300 968420 1195500 931910 760500 862360 1 1 0 1 1 1 1 1 1 1 1 605160 933130 0 1019300 1872400 1737000 904430 1158800 917440 761940 893170 563340 871040 52697 1044500 1770100 1712300 968420 1195500 931910 760500 862360 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 74974000 74974000 0 14420 562 13209 75604 91294 91294 529 1 NKLDHYAIIK Unmodified 1213.6819 0.68190733 1364 P62750 RPL23A 60S ribosomal protein L23a yes yes 0 0 0 1 By MS/MS 8 0 1 1 41.405 41.62 3 3.2405E-05 10690 20211116_3436_TMUAki_TMT10x_P_F8 99.671 29.501 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14421 1364 13210 75605 91295 91295 1 NKLDHYAIIKFPLTTESAMK Oxidation (M) 2335.2246 0.22460357 1364 P62750 RPL23A 60S ribosomal protein L23a yes yes 0 0 1 2 By MS/MS By MS/MS 2.17 0.687 1 3 2 5 1 57.894 57.661 4;5;6 7.0126E-07 20246 20211116_3441_TMUAki_TMT10x_S_F3 96.79 83.059 26353000 49168000 219720 36215000 39414000 72283000 35965000 54744000 56659000 51272000 38277000 24539000 45831000 1694600 38399000 37717000 71018000 37302000 56442000 56083000 50218000 37494000 7 7 5 7 7 7 7 7 7 7 7 23180000 43858000 219720 31588000 35373000 68839000 32964000 48774000 50479000 45809000 33470000 21585000 40878000 1430600 33648000 33870000 67380000 34105000 50514000 49984000 44862000 32814000 6 6 5 6 6 6 6 6 6 6 6 3172800 5310300 0 4627300 4040200 3443600 3001000 5970400 6179500 5462800 4807500 2954100 4952500 263940 4751100 3847000 3637900 3196800 5927600 6098800 5356200 4680100 1 1 0 1 1 1 1 1 1 1 1 10620000000 9000300000 1619800000 14422 1364 13211 75606;75607;75608;75609;75610;75611 91296;91297;91298;91299;91300;91301;91302 91302 1830 7 NKLQQLPADFGR Unmodified 1385.7415 0.74154747 2409 Q96AG4 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 47.259 47.206 3 7.9137E-12 12826 20211116_3428_TMUAki_TMT10x_P_F1 164.13 139.29 20803000 34043000 63752 32211000 40107000 38334000 23310000 39185000 38788000 30667000 35625000 19370000 31759000 1998700 33082000 38034000 38694000 25001000 39542000 38671000 30302000 34464000 4 4 1 4 4 4 4 4 4 4 4 9484700 15020000 0 15345000 30115000 29358000 16223000 18816000 18530000 14762000 16404000 8831000 14016000 1049900 15841000 28525000 28806000 17253000 19541000 18674000 14584000 15890000 2 2 0 2 2 2 2 2 2 2 2 11318000 19023000 63752 16866000 9991900 8976600 7086800 20369000 20258000 15906000 19221000 10539000 17743000 948780 17241000 9509500 9887400 7748100 20001000 19996000 15718000 18574000 2 2 1 2 2 2 2 2 2 2 2 3453400000 1899000000 1554500000 14423 2409 13212 75612;75613;75614;75615 91303;91304;91305;91306 91303 4 NKNDLTREEIVELMR Oxidation (M) 1874.952 0.95201053 1014 P42574 CASP3 Caspase-3;Caspase-3 subunit p17;Caspase-3 subunit p12 yes yes 0 0 1 2 By MS/MS By MS/MS 4 0 2 1 1 42.787 42.937 4 0.00094591 11589 20211116_3431_TMUAki_TMT10x_P_F4 70.26 57.123 1507300 2321700 12564 2912100 2605800 3021000 1772900 2473300 2437200 2061500 2386600 1403300 2168600 121160 2930800 2476400 3058500 1862500 2530000 2448500 2030400 2303800 2 2 1 2 2 2 2 2 2 2 2 894660 1320600 0 1731000 2088400 2534600 1306100 1466300 1457200 1217500 1440300 832770 1233800 59988 1748900 1980700 2508500 1370400 1537300 1475200 1199300 1389900 1 1 0 1 1 1 1 1 1 1 1 612640 1001100 12564 1181200 517450 486360 466880 1007000 979980 844050 946300 570520 934840 61168 1181900 495640 550030 492110 992720 973310 831060 913900 1 1 1 1 1 1 1 1 1 1 1 303290000 205190000 98100000 14424 1014 13213 75616;75617 91307;91308 91307 1306 2 NKNPAPPIDAVEQILPTLVR Unmodified 2184.2267 0.22665248 1172 P52292 KPNA2 Importin subunit alpha-1 yes yes 0 0 0 1 By MS/MS By MS/MS 6.56 2.55 2 1 3 10 10 6 76.719 76.715 3 5.5692E-42 25460 20211116_3436_TMUAki_TMT10x_P_F8 214.94 204 30509000 57278000 452150 38615000 38497000 59485000 39150000 40990000 37851000 40381000 45208000 28410000 53376000 2965800 41024000 36950000 58897000 39637000 42591000 38825000 39463000 43382000 12 12 7 12 12 12 12 12 12 12 12 19216000 34781000 238130 23241000 18102000 41842000 23485000 26001000 24400000 26354000 27641000 17893000 32411000 1705400 24803000 17501000 41123000 23569000 27246000 24898000 25724000 26564000 8 8 4 8 8 8 8 8 8 8 8 11293000 22497000 214020 15374000 20394000 17643000 15665000 14989000 13451000 14027000 17566000 10517000 20965000 1260400 16221000 19449000 17774000 16068000 15345000 13927000 13739000 16818000 4 4 3 4 4 4 4 4 4 4 4 13969000000 10441000000 3527900000 14425 1172 13214 75618;75619;75620;75621;75622;75623;75624;75625;75626;75627;75628;75629;75630;75631;75632;75633 91309;91310;91311;91312;91313;91314;91315;91316;91317;91318;91319;91320;91321;91322;91323;91324 91312 16 NKPEWFFK Unmodified 1094.5549 0.5549159 1432 P78417;P78417-2;P78417-3 GSTO1 Glutathione S-transferase omega-1 yes no 0 0 0 1 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 55.987 55.833 3 0.0063343 16719 20211116_3440_TMUAki_TMT10x_S_F2 75.294 40.573 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14426 1432 13215 75634;75635;75636 91325;91326;91327 91327 3 NKPGPYSSVPPPSAPPPK Unmodified 1815.9519 0.95193418 1740 Q14978;Q14978-2;Q14978-3 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 0 0 0 1 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 39.614 39.555 4 7.7831E-06 9979 20211116_3440_TMUAki_TMT10x_S_F2 91.457 73.54 1097800 1699800 625.45 2239200 3353200 2464500 1392800 1698700 1748800 1214800 1824300 1022100 1588100 117100 2249600 3165600 2479500 1526300 1751200 1766200 1206400 1757500 2 2 1 2 2 2 2 2 2 2 2 859290 1311400 0 1762800 3136700 2275300 1200400 1255900 1281100 897490 1394000 800040 1225400 97055 1774100 2958500 2263400 1321400 1317600 1303700 891300 1341200 1 1 0 1 1 1 1 1 1 1 1 238500 388380 625.45 476430 216540 189140 192330 442770 467730 317300 430270 222080 362730 20049 475520 207060 216100 204880 433620 462450 315060 416220 1 1 1 1 1 1 1 1 1 1 1 347420000 322280000 25138000 14427 1740 13216 75637;75638;75639 91328;91329 91329 2 NKPGPYSSVPPPSAPPPKK Unmodified 1944.0469 0.046897198 1740 Q14978;Q14978-2;Q14978-3 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 0 0 0 2 By matching By MS/MS 2.67 0.471 1 2 1 2 37.638 37.387 4;5 3.1982E-05 11914 20211116_3441_TMUAki_TMT10x_S_F3 81.157 63.562 892630 1411400 19690 1791300 877340 765490 904310 1359500 1503200 965400 1462100 831280 1318400 92142 1785200 843100 856450 934410 1340500 1501600 959090 1411700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 892630 1411400 19690 1791300 877340 765490 904310 1359500 1503200 965400 1462100 831280 1318400 92142 1785200 843100 856450 934410 1340500 1501600 959090 1411700 2 2 2 2 2 2 2 2 2 2 2 225370000 87197000 138180000 14428 1740 13217 75640;75641;75642 91330;91331 91330 2 NKPHTPFR Unmodified 995.5301 0.53009814 62 O00139;O00139-2;O00139-1;O00139-5;O00139-4 KIF2A Kinesin-like protein KIF2A yes no 0 0 0 1 By MS/MS 1.67 0.471 1 2 3 28.415 28.257 3;4 0.0083245 6858 20211116_3429_TMUAki_TMT10x_P_F2 76.679 48.502 846040 1340800 11660 1166100 933820 1380300 1662900 815730 791360 927130 949500 787820 1250400 81377 1205100 914370 1380300 1621700 861200 848820 900890 911050 3 3 2 3 3 3 3 3 3 3 3 846040 1340800 11660 1166100 933820 1380300 1662900 815730 791360 927130 949500 787820 1250400 81377 1205100 914370 1380300 1621700 861200 848820 900890 911050 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17105000 17105000 0 14429 62 13218 75643;75644;75645 91332;91333 91332 2 NKPIVNIDPQTAELNHLK Unmodified 2043.1113 0.11128837 416 O95239;O95239-2 KIF4A Chromosome-associated kinesin KIF4A yes no 0 0 0 1 By matching By MS/MS 7.33 0.471 2 1 1 2 52.067 52.435 4 2.335E-40 14595 20211116_3447_TMUAki_TMT10x_S_F8 200.58 189.06 6558700 11267000 86570 13053000 5199900 6083600 4901400 9912000 10519000 8733400 10036000 6107300 10520000 588290 13086000 4982500 6713500 5161200 9849400 10439000 8578000 9696600 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6558700 11267000 86570 13053000 5199900 6083600 4901400 9912000 10519000 8733400 10036000 6107300 10520000 588290 13086000 4982500 6713500 5161200 9849400 10439000 8578000 9696600 3 3 2 3 3 3 3 3 3 3 3 1070800000 468420000 602420000 14430 416 13219 75646;75647;75648 91334;91335;91336 91336 3 NKQELSFYSIPEFDEWKK Unmodified 2287.1161 0.11609898 1500 Q02880;Q02880-2 TOP2B DNA topoisomerase 2-beta yes no 0 0 0 2 By MS/MS 7.5 0.5 1 1 2 70.248 70.302 4 0.015319 24236 20211116_3446_TMUAki_TMT10x_S_F7 52.185 39.752 7864400 13184000 301350 13498000 10619000 7465300 9944600 6332800 5670600 6684900 10240000 7324800 12303000 971450 13658000 10184000 7951800 9990200 6506500 6118100 6514300 9736800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7864400 13184000 301350 13498000 10619000 7465300 9944600 6332800 5670600 6684900 10240000 7324800 12303000 971450 13658000 10184000 7951800 9990200 6506500 6118100 6514300 9736800 2 2 2 2 2 2 2 2 2 2 2 1465100000 0 1465100000 14431 1500 13220 75649;75650 91337;91338 91337 2 NKQEVMISDLEER Unmodified 1589.7719 0.7719209 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 1 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 46.438 46.374 3 6.9974E-15 14149 20211116_3429_TMUAki_TMT10x_P_F2 172.43 142.1 18599000 30321000 167840 37789000 36770000 31816000 23966000 16709000 14893000 16076000 24562000 17319000 28320000 1912400 37934000 34942000 32441000 24699000 17732000 15891000 15727000 23395000 8 8 5 8 8 8 8 8 8 8 8 12935000 20984000 149650 25548000 32364000 28172000 20055000 11952000 10751000 11309000 16866000 12045000 19598000 1446600 25780000 30729000 28173000 20698000 12951000 11561000 11071000 16081000 5 5 3 5 5 5 5 5 5 5 5 5664100 9336400 18192 12241000 4405900 3643900 3911300 4757500 4142500 4767700 7696200 5273900 8722700 465810 12154000 4213100 4267500 4000400 4781300 4330200 4656000 7314200 3 3 2 3 3 3 3 3 3 3 3 1183100000 786730000 396350000 14432 935 13221 75651;75652;75653;75654;75655 91339;91340;91341;91342;91343;91344;91345;91346 91340 8 NKQEVMISDLEER Oxidation (M) 1605.7668 0.76683553 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 1 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 40.04 39.875 3 0.0050837 12985 20211116_3441_TMUAki_TMT10x_S_F3 62.357 49.731 2244700 3363700 3387.4 4303500 5752200 5408900 3117300 3750600 3877200 2717000 4086400 2089700 3142200 188590 4340400 5446300 5404800 3323300 3866100 3918600 2696100 3935600 3 3 1 3 3 3 3 3 3 3 3 1779700 2663700 0 3469200 5381600 5004700 2762800 2952000 2974700 2077600 3280500 1656700 2488500 148200 3505300 5091000 4957600 2945900 3078800 3027900 2065100 3155100 2 2 0 2 2 2 2 2 2 2 2 465060 700030 3387.4 834250 370690 404250 354470 798550 902460 639380 805930 433050 653710 40392 835170 355240 447210 377360 787250 890700 631010 780440 1 1 1 1 1 1 1 1 1 1 1 324170000 287590000 36585000 14433 935 13221 75656;75657;75658 91347;91348 91348 1193 2 NKQPTPVNIR Unmodified 1165.6568 0.65675521 3289 Q9Y3Y2;Q9Y3Y2-4;Q9Y3Y2-3 CHTOP Chromatin target of PRMT1 protein yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 30.89 30.915 3 2.0885E-05 6374 20211116_3428_TMUAki_TMT10x_P_F1 134.57 96.262 1693600 2845800 9918.9 2352800 2256700 2371100 2200500 1934000 2190600 1950000 2341600 1577000 2653600 150680 2435300 2162600 2404500 2234700 1988900 2234300 1903800 2254100 3 3 1 3 3 3 3 3 3 3 3 450450 752100 0 636290 834630 989130 653140 624990 697710 568220 721700 419390 701360 39898 662570 795530 977720 673370 652120 708700 557290 695460 1 1 0 1 1 1 1 1 1 1 1 1243200 2093700 9918.9 1716500 1422100 1381900 1547400 1309000 1492800 1381800 1619900 1157600 1952300 110790 1772800 1367000 1426800 1561400 1336800 1525600 1346600 1558700 2 2 1 2 2 2 2 2 2 2 2 182110000 120860000 61247000 14434 3289 13222 75659;75660 91349;91350;91351 91349 3 NKSEDSTKDDIDLDALAAEIEGAGAAK Unmodified 2746.3145 0.31447702 295 O60841 EIF5B Eukaryotic translation initiation factor 5B yes yes 0 0 0 2 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 76.108 76.107 4 7.7091E-25 25319 20211116_3433_TMUAki_TMT10x_P_F5 156.43 135.62 11125000 19318000 61545 16203000 12383000 18418000 13250000 11260000 11450000 12310000 14698000 10358000 18014000 955090 16783000 11896000 18465000 13339000 11841000 11842000 11979000 14078000 5 5 3 5 5 5 5 5 5 5 5 7091700 12138000 12468 10205000 7432600 13759000 8275700 7227900 7444800 7791400 9289800 6602800 11319000 562140 10601000 7145900 13651000 8324600 7695300 7675600 7586200 8904400 3 3 1 3 3 3 3 3 3 3 3 4032900 7180000 49078 5998000 4950400 4658400 4974500 4031800 4005000 4518200 5408600 3755400 6695300 392950 6182400 4750300 4814200 5014600 4145500 4166600 4392700 5174000 2 2 2 2 2 2 2 2 2 2 2 2707600000 1114100000 1593500000 14435 295 13223 75661;75662;75663;75664 91352;91353;91354;91355;91356 91353 5 NKTEYEEAQDAIVK Unmodified 1636.7944 0.79443049 1027 P43246;P43246-2 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 44.181 44.28 3 3.1539E-14 12085 20211116_3431_TMUAki_TMT10x_P_F4 154.69 119.03 1926200 2837100 38597 4381400 9185600 6627600 3543900 3768000 4393400 2452000 3650700 1793800 2653100 297340 4394200 8668000 6549000 3916000 3936000 4406000 2449000 3544700 2 2 2 2 2 2 2 2 2 2 2 1926200 2837100 38597 4381400 9185600 6627600 3543900 3768000 4393400 2452000 3650700 1793800 2653100 297340 4394200 8668000 6549000 3916000 3936000 4406000 2449000 3544700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 354070000 354070000 0 14436 1027 13224 75665;75666 91357;91358;91359 91357 3 NKTGAAPIIDVVR Unmodified 1352.7776 0.77759863 1050 P46776 RPL27A 60S ribosomal protein L27a yes yes 0 0 0 1 By MS/MS By MS/MS 7.2 0.748 1 2 2 2 3 42.956 43.237 3 6.8827E-12 11340 20211116_3436_TMUAki_TMT10x_P_F8 153.23 125.22 14068000 27685000 142990 20219000 46550000 46006000 24750000 46722000 45156000 32814000 34077000 13099000 25805000 1633300 21539000 44087000 45293000 26877000 47051000 44653000 32621000 33216000 11 11 8 11 11 11 11 11 11 11 11 9164900 18242000 35879 12662000 40462000 40401000 20326000 32111000 31121000 22511000 22806000 8532700 17001000 1110300 13726000 38285000 39260000 22005000 32780000 30892000 22381000 22257000 5 5 2 5 5 5 5 5 5 5 5 4903300 9443400 107110 7556900 6087500 5604900 4423800 14610000 14036000 10303000 11271000 4566300 8804700 522930 7813300 5801600 6032700 4871800 14271000 13760000 10240000 10959000 6 6 6 6 6 6 6 6 6 6 6 2106400000 1500700000 605620000 14437 1050 13225 75667;75668;75669;75670;75671 91360;91361;91362;91363;91364;91365;91366;91367;91368;91369;91370 91363 11 NKWFFQK Unmodified 996.51814 0.51813647 1310 P61353 RPL27 60S ribosomal protein L27 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 52.852 53.042 3 0.0026102 15884 20211116_3433_TMUAki_TMT10x_P_F5 111.04 95.464 9487900 17137000 176140 14833000 20093000 14143000 11452000 12595000 11149000 10825000 16463000 8835500 15982000 1099300 15285000 19060000 14416000 12059000 12831000 11544000 10645000 15717000 3 3 3 3 3 3 3 3 3 3 3 2826900 5345600 7220.4 4365000 10695000 9274400 6292900 3821500 3393400 3458700 5140700 2632200 4984400 351290 4595700 10144000 9022800 6523600 4149800 3641100 3392900 4905000 1 1 1 1 1 1 1 1 1 1 1 6661000 11791000 168920 10468000 9398700 4868500 5159100 8773300 7755100 7366400 11322000 6203300 10997000 748010 10689000 8915600 5392800 5535100 8681000 7902500 7252400 10812000 2 2 2 2 2 2 2 2 2 2 2 467590000 328720000 138870000 14438 1310 13226 75672;75673 91371;91372;91373 91371 3 NKYGDAFIR Unmodified 1082.5509 0.55089316 1352 P62312 LSM6 U6 snRNA-associated Sm-like protein LSm6 yes yes 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 36.846 37.132 3 0.060429 10083 20211116_3435_TMUAki_TMT10x_P_F7 52.167 34.094 416740 655300 0 705090 1447800 891140 602780 440500 551710 421090 629140 388020 611650 47980 718570 1366900 886230 654030 470040 566250 412060 604510 1 1 0 1 1 1 1 1 1 1 1 416740 655300 0 705090 1447800 891140 602780 440500 551710 421090 629140 388020 611650 47980 718570 1366900 886230 654030 470040 566250 412060 604510 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 61870000 61870000 0 14439 1352 13227 75674;75675;75676 91374;91375;91376 91374 3 NKYNTPK Unmodified 863.45012 0.45011648 1051 P46777 RPL5 60S ribosomal protein L5 yes yes 0 0 0 1 By MS/MS 1 0 1 1 29.072 29.153 3 0.013496 7598 20211116_3439_TMUAki_TMT10x_S_F1 82.452 56.558 202290 363470 1931.1 190150 262080 321490 248180 209000 215820 212520 292030 188370 338500 19408 208190 251060 316890 251470 218280 223680 207420 279360 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 202290 363470 1931.1 190150 262080 321490 248180 209000 215820 212520 292030 188370 338500 19408 208190 251060 316890 251470 218280 223680 207420 279360 1 1 1 1 1 1 1 1 1 1 1 5354700 0 5354700 14440 1051 13228 75677 91377 91377 1 NKYQELINDIAR Unmodified 1475.7732 0.77324153 1059 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 59.443 59.874 3 0.00057616 19340 20211116_3435_TMUAki_TMT10x_P_F7 81.185 58.652 12937000 20332000 85134 21203000 16620000 19880000 14593000 15392000 14555000 14978000 17154000 12045000 18975000 1125800 21549000 15885000 20233000 14907000 15864000 14901000 14645000 16467000 2 2 1 2 2 2 2 2 2 2 2 6462800 9901000 85134 10708000 9007500 13811000 8033200 7829400 7354600 7762400 8481900 6018100 9241700 650790 10914000 8617500 13744000 8178400 8260300 7551700 7584000 8147300 1 1 1 1 1 1 1 1 1 1 1 6474100 10431000 0 10494000 7612200 6068900 6559300 7562700 7200200 7215300 8671800 6027400 9733200 475030 10635000 7267400 6489100 6728300 7603400 7349100 7061200 8319800 1 1 0 1 1 1 1 1 1 1 1 1718600000 777050000 941570000 14441 1059 13229 75678;75679;75680 91378;91379 91378 2 NLADCLR Unmodified 860.41744 0.41743614 1113 P49721 PSMB2 Proteasome subunit beta type-2 yes yes 0 0 0 0 By MS/MS 4 0 1 1 37.699 37.857 2 0.048689 9882 20211116_3442_TMUAki_TMT10x_S_F4 69.825 24.743 353170 530060 0 609070 348180 290690 369220 331250 355500 296030 479430 328830 494890 27746 611010 334280 316680 373000 333690 366660 290570 458650 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 353170 530060 0 609070 348180 290690 369220 331250 355500 296030 479430 328830 494890 27746 611010 334280 316680 373000 333690 366660 290570 458650 1 1 0 1 1 1 1 1 1 1 1 9581200 0 9581200 14442 1113 13230 75681 91380 91380 1 NLAEDEAHACAILIK Unmodified 1666.8349 0.83485551 1788 Q15334 LLGL1 Lethal(2) giant larvae protein homolog 1 yes yes 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 57.26 57.028 3 7.2579E-07 18955 20211116_3430_TMUAki_TMT10x_P_F3 112.5 77.297 3055700 4777900 196680 5343800 4307000 6190800 3971000 4461100 3993800 3859200 4484300 2846600 4460400 454160 5424300 4133200 6215700 4046200 4605000 4079400 3793900 4310700 1 1 1 1 1 1 1 1 1 1 1 3055700 4777900 196680 5343800 4307000 6190800 3971000 4461100 3993800 3859200 4484300 2846600 4460400 454160 5424300 4133200 6215700 4046200 4605000 4079400 3793900 4310700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 206810000 206810000 0 14443 1788 13231 75682;75683 91381;91382 91382 2 NLAENISR Unmodified 915.47739 0.47739386 620;521 P11216;P11217;P11217-2;P06737;P06737-2 PYGB;PYGM;PYGL Glycogen phosphorylase, brain form;Glycogen phosphorylase, muscle form;Glycogen phosphorylase, liver form no no 0 0 0 0 By MS/MS 3 0 1 1 33.468 33.228 2 0.034477 10335 20211116_3441_TMUAki_TMT10x_S_F3 62.104 27.173 521690 914630 10068 893840 589310 491340 596210 635640 671550 538800 771470 485820 853370 53582 907310 565840 528620 606730 636100 683430 530210 741110 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 521690 914630 10068 893840 589310 491340 596210 635640 671550 538800 771470 485820 853370 53582 907310 565840 528620 606730 636100 683430 530210 741110 1 1 1 1 1 1 1 1 1 1 1 19709000 0 19709000 14444 620;521 13232 75684 91383 91383 1 NLALCPANHAPLREQGAIPR Unmodified 2197.1538 0.15383866 923 P35222 CTNNB1 Catenin beta-1 yes yes 0 0 0 1 By MS/MS By matching 1 0 2 1 1 39.171 39.115 4 1.8591E-13 9635 20211116_3428_TMUAki_TMT10x_P_F1 138.75 121.26 694880 1068300 0 1326000 1833600 1837700 1102400 1152700 1232300 1007700 1096700 646890 997790 59979 1342200 1738900 1825100 1160500 1202200 1243200 990190 1062200 1 1 0 1 1 1 1 1 1 1 1 694880 1068300 0 1326000 1833600 1837700 1102400 1152700 1232300 1007700 1096700 646890 997790 59979 1342200 1738900 1825100 1160500 1202200 1243200 990190 1062200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 188150000 118290000 69854000 14445 923 13233 75685;75686 91384 91384 1 NLALDINELKPGNLLK Unmodified 1764.0145 0.014534437 12 A5YKK6;A5YKK6-3;A5YKK6-2;A5YKK6-4 CNOT1 CCR4-NOT transcription complex subunit 1 yes no 0 0 0 1 By MS/MS 1 0 2 2 76.539 76.539 3 9.5623E-10 24832 20211116_3428_TMUAki_TMT10x_P_F1 110.22 90.476 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14446 12 13234 75687;75688 91385;91386 91385 2 NLAMEATYINHNFSQQCLR Oxidation (M) 2325.063 0.063034322 185 O15371;O15371-2;O15371-3 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 0 0 1 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 54.35 54.672 3 1.0715E-41 17156 20211116_3435_TMUAki_TMT10x_P_F7 216.17 208.16 7701200 14062000 6251.6 12706000 9689600 16243000 8650200 11324000 11300000 10594000 11318000 7169700 13116000 425880 13111000 9257700 16218000 8910600 11740000 11380000 10377000 10918000 6 6 1 6 6 6 6 6 6 6 6 4465500 7823900 6251.6 7022800 5752200 12332000 5331700 6215600 6577200 5997300 6301400 4157600 7297500 224080 7300400 5502900 12098000 5468700 6621700 6626900 5866300 6087200 3 3 1 3 3 3 3 3 3 3 3 3235700 6237800 0 5682900 3937400 3910600 3318500 5108800 4722500 4597100 5016700 3012200 5818500 201800 5810200 3754900 4120100 3441900 5118500 4753300 4510800 4830400 3 3 0 3 3 3 3 3 3 3 3 5408400000 2602500000 2806000000 14447 185 13235 75689;75690;75691;75692 91387;91388;91389;91390;91391;91392 91387 137 6 NLAMEATYINHNFSQQCLR Unmodified 2309.0681 0.0681197 185 O15371;O15371-2;O15371-3 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 58.151 58.222 3 3.446E-58 16952 20211116_3447_TMUAki_TMT10x_S_F8 242.85 233.57 7630400 13115000 61928 13056000 9372300 10874000 8808600 7986100 6906600 7171000 10142000 7104500 12237000 642420 13291000 8971500 11147000 8905500 8241100 7224300 7037100 9683600 4 4 3 4 4 4 4 4 4 4 4 3756200 5781100 5649.3 6467100 4653700 6398000 4734200 2957700 2369900 2767600 4558900 3496800 5396900 256940 6548000 4459800 6444800 4724700 3175100 2592100 2710800 4330000 2 2 1 2 2 2 2 2 2 2 2 3874200 7333700 56279 6589200 4718600 4476000 4074400 5028400 4536700 4403400 5583300 3607700 6840400 385470 6743000 4511600 4702700 4180800 5066000 4632200 4326400 5353600 2 2 2 2 2 2 2 2 2 2 2 2009000000 1142800000 866200000 14448 185 13235 75693;75694 91393;91394;91395;91396 91395 4 NLAMGVNLTSMSK Oxidation (M) 1380.6741 0.67412112 635 P12004 PCNA Proliferating cell nuclear antigen yes yes 0 0 1 0 By MS/MS By MS/MS 1.2 0.4 4 1 2 3 55.039 54.841 2;3 0.00012022 16266 20211116_3428_TMUAki_TMT10x_P_F1 88.552 66.354 13730000 22760000 150880 24033000 15628000 14881000 14001000 13219000 12826000 13537000 18363000 12785000 21242000 1277400 24291000 14951000 15687000 14251000 13533000 13296000 13208000 17543000 5 5 2 5 5 5 5 5 5 5 5 3389900 5357400 0 5856400 5522400 5911100 4385500 2533300 2723200 2822500 4568300 3156300 5000800 303200 5940000 5266000 5942500 4456400 2754800 2908600 2744700 4349800 1 1 0 1 1 1 1 1 1 1 1 10341000 17403000 150880 18177000 10105000 8970100 9615900 10685000 10103000 10714000 13795000 9629000 16241000 974200 18351000 9684900 9744600 9794500 10778000 10388000 10463000 13193000 4 4 2 4 4 4 4 4 4 4 4 853750000 300830000 552920000 14449 635 13236 75695;75696;75697;75698;75699 91397;91398;91399;91400;91401;91402 91397 668;669 6 NLAMGVNLTSMSK 2 Oxidation (M) 1396.669 0.66903574 635 P12004 PCNA Proliferating cell nuclear antigen yes yes 0 0 2 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 46.274 46.552 3 0.00066253 12658 20211116_3436_TMUAki_TMT10x_P_F8 78.529 57.576 7251800 12466000 184060 12648000 11951000 14008000 8650500 13755000 13029000 10659000 11640000 6753500 11633000 838570 12911000 11387000 14181000 9082700 13905000 13014000 10538000 11272000 4 4 4 4 4 4 4 4 4 4 4 3642700 6573600 88121 6542800 8417900 10418000 5443000 7451800 7043800 5576700 6255800 3392400 6133700 451010 6734800 8002000 10307000 5726100 7670100 7067800 5523800 6059100 2 2 2 2 2 2 2 2 2 2 2 3609100 5892200 95935 6105600 3532800 3590400 3207500 6303200 5985400 5082400 5384400 3361100 5498800 387560 6176000 3385100 3873800 3356500 6235200 5946200 5014100 5212700 2 2 2 2 2 2 2 2 2 2 2 1078100000 730430000 347670000 14450 635 13236 75700;75701;75702;75703 91403;91404;91405;91406 91404 668;669 4 NLANTVTEEILEK Unmodified 1472.7722 0.77223848 271;272 O60506;O60506-2;O60506-3;O60506-4;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 0 By MS/MS By MS/MS 3.27 1.6 4 4 4 4 4 2 10 12 75.286 75.227 2;3 1.0559E-93 24527 20211116_3440_TMUAki_TMT10x_S_F2 371.33 289.35 188170000 312080000 655560 282790000 220080000 291070000 230760000 225300000 217450000 220890000 248640000 175200000 291090000 14852000 290680000 211210000 294530000 233100000 232260000 222910000 215920000 238890000 32 32 16 32 32 32 32 32 32 32 32 104700000 169550000 355790 152050000 115730000 202890000 133660000 121670000 119700000 119710000 133070000 97481000 158140000 7748600 157110000 111350000 201730000 134210000 127750000 122860000 117000000 127960000 17 17 10 17 17 17 17 17 17 17 17 83467000 142530000 299770 130740000 104350000 88184000 97097000 103630000 97756000 101180000 115570000 77715000 132950000 7103600 133570000 99866000 92808000 98889000 104510000 100050000 98922000 110930000 15 15 6 15 15 15 15 15 15 15 15 37660000000 19974000000 17687000000 14451 271;272 13237 75704;75705;75706;75707;75708;75709;75710;75711;75712;75713;75714;75715;75716;75717;75718;75719;75720;75721;75722;75723;75724;75725 91407;91408;91409;91410;91411;91412;91413;91414;91415;91416;91417;91418;91419;91420;91421;91422;91423;91424;91425;91426;91427;91428;91429;91430;91431;91432;91433;91434;91435;91436;91437;91438 91428 32 NLATTVTEEILEK Unmodified 1459.777 0.77698951 211 O43390;O43390-2;O43390-3;O43390-4 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 0 By MS/MS By MS/MS 2.97 1.01 3 6 17 5 3 17 17 74.73 74.695 2;3 5.8829E-65 26967 20211116_3429_TMUAki_TMT10x_P_F2 323.45 255.46 271210000 458610000 1512100 398000000 330440000 418340000 332630000 307190000 287440000 313010000 363800000 252510000 427710000 21973000 410610000 316810000 422430000 335890000 318110000 297110000 305460000 348580000 22 22 10 22 22 22 22 22 22 22 22 139720000 226790000 758710 198170000 141330000 267260000 160400000 156900000 146870000 158780000 182350000 130090000 211510000 11046000 205220000 135950000 265530000 161280000 165150000 151260000 155000000 174800000 9 9 5 9 9 9 9 9 9 9 9 131490000 231820000 753420 199830000 189110000 151080000 172230000 150290000 140580000 154230000 181450000 122420000 216200000 10927000 205390000 180860000 156900000 174610000 152960000 145850000 150470000 173780000 13 13 5 13 13 13 13 13 13 13 13 56535000000 28693000000 27842000000 14452 211 13238 75726;75727;75728;75729;75730;75731;75732;75733;75734;75735;75736;75737;75738;75739;75740;75741;75742;75743;75744;75745;75746;75747;75748;75749;75750;75751;75752;75753;75754;75755;75756;75757;75758;75759 91439;91440;91441;91442;91443;91444;91445;91446;91447;91448;91449;91450;91451;91452;91453;91454;91455;91456;91457;91458;91459;91460;91461;91462;91463;91464;91465;91466;91467;91468;91469;91470;91471;91472;91473;91474;91475 91441 37 NLDCPELISEFMK Oxidation (M) 1610.732 0.73202992 1035 P45973 CBX5 Chromobox protein homolog 5 yes yes 0 0 1 0 By MS/MS By MS/MS 4.5 0.957 2 4 4 2 6 6 70.319 70.238 2;3 2.0628E-21 23106 20211116_3442_TMUAki_TMT10x_S_F4 165.07 142.49 58873000 103120000 1089600 89329000 74334000 96297000 75455000 72435000 69775000 73577000 80348000 54823000 96169000 5945800 92209000 71359000 97135000 76303000 74885000 71608000 71812000 77182000 9 9 7 9 9 9 9 9 9 9 9 22897000 37951000 390300 31742000 27733000 48406000 29770000 25429000 24595000 26052000 28031000 21321000 35389000 2166200 33070000 26656000 47769000 29931000 27032000 25370000 25418000 26934000 3 3 2 3 3 3 3 3 3 3 3 35975000 65167000 699340 57588000 46601000 47891000 45684000 47006000 45180000 47525000 52317000 33502000 60780000 3779700 59139000 44703000 49367000 46372000 47853000 46238000 46394000 50248000 6 6 5 6 6 6 6 6 6 6 6 6052000000 2710500000 3341500000 14453 1035 13239 75760;75761;75762;75763;75764;75765;75766;75767;75768;75769;75770;75771 91476;91477;91478;91479;91480;91481;91482;91483;91484;91485;91486;91487;91488 91484 1339 13 NLDCPELISEFMK Unmodified 1594.7371 0.7371153 1035 P45973 CBX5 Chromobox protein homolog 5 yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 78.235 78.252 2;3 2.4866E-05 26389 20211116_3442_TMUAki_TMT10x_S_F4 92.247 74.921 7710900 10537000 26587 12264000 7095000 8448500 9195200 2313600 1857900 3520800 6362700 7179800 9838500 655440 12333000 6857500 8704300 8990100 2698000 2371000 3388800 5998400 1 1 1 1 1 1 1 1 1 1 1 7710900 10537000 26587 12264000 7095000 8448500 9195200 2313600 1857900 3520800 6362700 7179800 9838500 655440 12333000 6857500 8704300 8990100 2698000 2371000 3388800 5998400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 840540000 840540000 0 14454 1035 13239 75772;75773;75774 91489;91490;91491 91491 3 NLDCPELISEFMKK Oxidation (M) 1738.827 0.82699294 1035 P45973 CBX5 Chromobox protein homolog 5 yes yes 0 0 1 1 By MS/MS By MS/MS 6 0.707 1 2 1 2 2 63.618 63.762 3 0.00025943 20295 20211116_3433_TMUAki_TMT10x_P_F5 73.887 61.721 25149000 41934000 106430 35271000 37397000 37339000 27711000 45491000 38180000 39655000 38298000 23416000 39104000 2281100 36484000 35617000 38094000 28939000 45666000 38387000 38969000 36941000 4 4 2 4 4 4 4 4 4 4 4 5688200 8793000 80054 7585400 7430600 13291000 7238800 9438500 8648300 9112300 8295100 5296900 8200300 570600 7909000 7124800 13101000 7396300 9781100 8724000 8913000 8013000 1 1 1 1 1 1 1 1 1 1 1 19461000 33141000 26371 27686000 29967000 24048000 20473000 36052000 29531000 30542000 30003000 18119000 30903000 1710500 28575000 28492000 24993000 21543000 35885000 29663000 30056000 28928000 3 3 1 3 3 3 3 3 3 3 3 2481400000 825490000 1655900000 14455 1035 13240 75775;75776;75777;75778 91492;91493;91494;91495;91496 91492 1339 5 NLDCPELISEFMKK Unmodified 1722.8321 0.83207832 1035 P45973 CBX5 Chromobox protein homolog 5 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 74.448 74.47 3 2.478E-15 23877 20211116_3445_TMUAki_TMT10x_S_F6 160.03 134.47 85299000 131810000 1624200 135480000 100180000 81163000 95299000 35368000 26590000 40049000 88862000 79434000 123010000 8794000 137140000 96033000 85005000 94794000 38411000 32267000 38921000 83794000 10 10 10 10 10 10 10 10 10 10 10 50292000 76613000 846270 78539000 47588000 55507000 56431000 20129000 14884000 22739000 51823000 46833000 71495000 4920400 79642000 45903000 57172000 55492000 22330000 18271000 22100000 48848000 5 5 5 5 5 5 5 5 5 5 5 35007000 55198000 777970 56945000 52592000 25656000 38868000 15239000 11706000 17310000 37040000 32601000 51512000 3873600 57502000 50130000 27833000 39302000 16081000 13997000 16821000 34947000 5 5 5 5 5 5 5 5 5 5 5 5645600000 2369800000 3275900000 14456 1035 13240 75779;75780;75781;75782;75783;75784 91497;91498;91499;91500;91501;91502;91503;91504;91505;91506 91503 10 NLDDGIDDER Unmodified 1160.4946 0.49456007 634 P11940;P11940-2;Q9H361 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 36.324 36.294 2 7.8277E-14 10450 20211116_3439_TMUAki_TMT10x_S_F1 219.72 168.52 722750 1227200 11856 1264800 1376600 934480 851200 587070 797260 589570 1032700 673040 1145200 80128 1282700 1307400 964550 889210 614500 821790 575700 988970 2 2 2 2 2 2 2 2 2 2 2 334810 546590 9222.4 577750 1028800 636510 429300 273090 387550 278210 493820 311810 510140 46074 588080 971990 636650 465510 296150 399860 271510 473080 1 1 1 1 1 1 1 1 1 1 1 387940 680610 2633.4 687070 347740 297960 421900 313980 409710 311360 538930 361230 635110 34054 694650 335450 327910 423700 318340 421930 304200 515890 1 1 1 1 1 1 1 1 1 1 1 66330000 38688000 27641000 14457 634 13241 75785;75786 91507;91508 91508 2 NLDDGIDDERLR Unmodified 1429.6797 0.67973508 634 P11940;P11940-2;Q9H361 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 yes no 0 0 0 1 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 38.669 38.561 3 3.6719E-24 11419 20211116_3439_TMUAki_TMT10x_S_F1 242.48 205.14 6802000 9383600 87307 12449000 19334000 15025000 8734400 12264000 14441000 8904600 12579000 6333700 8767300 779160 12522000 18274000 15086000 9590600 12508000 14375000 8835100 12192000 7 7 3 7 7 7 7 7 7 7 7 4743500 6187300 75777 8249800 17724000 13560000 7149700 7871200 9867000 5860800 8627500 4417000 5781100 619720 8349900 16732000 13359000 7889300 8229900 9875100 5806800 8361000 4 4 2 4 4 4 4 4 4 4 4 2058500 3196300 11529 4199600 1609400 1465100 1584700 4392900 4573900 3043700 3951500 1916600 2986200 159440 4172500 1542300 1727000 1701300 4278200 4500300 3028200 3831200 3 3 1 3 3 3 3 3 3 3 3 1318000000 876940000 441050000 14458 634 13242 75787;75788;75789;75790;75791 91509;91510;91511;91512;91513;91514;91515 91513 7 NLDENGLDLLSK Unmodified 1329.6776 0.67760981 517 P06493;P06493-2 CDK1 Cyclin-dependent kinase 1 yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 4 4 4 7 5 67.326 67.29 2;3 1.5127E-39 21461 20211116_3431_TMUAki_TMT10x_P_F4 295.37 191.5 61243000 105930000 301240 102380000 79148000 97275000 71476000 76740000 78908000 69859000 85523000 57021000 98826000 5107000 104620000 75683000 98951000 73133000 78854000 80185000 68511000 82296000 11 11 7 11 11 11 11 11 11 11 11 33094000 54745000 150350 53707000 50967000 71446000 46348000 39132000 41230000 36344000 44287000 30814000 51079000 3014800 55129000 48754000 70964000 47096000 41334000 42276000 35611000 42627000 6 6 4 6 6 6 6 6 6 6 6 28148000 51181000 150890 48671000 28181000 25829000 25128000 37608000 37679000 33514000 41236000 26207000 47747000 2092200 49488000 26929000 27986000 26037000 37520000 37909000 32901000 39668000 5 5 3 5 5 5 5 5 5 5 5 5917800000 3092400000 2825400000 14459 517 13243 75792;75793;75794;75795;75796;75797;75798;75799;75800;75801;75802;75803 91516;91517;91518;91519;91520;91521;91522;91523;91524;91525;91526;91527;91528;91529;91530 91520 15 NLDFGIDMDSR Oxidation (M) 1297.5609 0.5608655 2241 Q8NE71;Q8NE71-2 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 1 0 By MS/MS By MS/MS 3 0 2 1 1 53.63 53.368 2 0.066967 17434 20211116_3430_TMUAki_TMT10x_P_F3 55.649 43.801 7498700 12327000 389410 14511000 8501400 10803000 7954800 10723000 10041000 8793000 10833000 6985000 11511000 998660 14594000 8161400 11233000 8162000 10848000 10152000 8667200 10425000 2 2 2 2 2 2 2 2 2 2 2 2219600 3710800 64627 4020000 4060400 5602100 3259300 3444500 3176900 2822600 3310100 2067100 3463700 270030 4102900 3877100 5561000 3345400 3592400 3240300 2782300 3189000 1 1 1 1 1 1 1 1 1 1 1 5279200 8616400 324790 10491000 4441000 5201200 4695500 7278000 6863800 5970400 7522600 4917800 8047000 728630 10491000 4284300 5671600 4816700 7255900 6911300 5884900 7236400 1 1 1 1 1 1 1 1 1 1 1 395780000 205470000 190310000 14460 2241 13244 75804;75805 91531 91531 2640 1 NLDFQALEETTEYDGGYTR Unmodified 2220.9811 0.98112164 1517 Q05086;Q05086-2;Q05086-3 UBE3A Ubiquitin-protein ligase E3A yes no 0 0 0 0 By MS/MS 1 0 3 3 73.949 73.949 2;3 1.1738E-68 23769 20211116_3428_TMUAki_TMT10x_P_F1 256.35 232.67 7506600 11870000 0 12980000 8206900 11611000 9320000 4892200 4206000 5502600 7718400 6988800 11080000 548810 13143000 7891700 11762000 9237200 5331400 4627300 5349000 7336900 2 2 0 2 2 2 2 2 2 2 2 7506600 11870000 0 12980000 8206900 11611000 9320000 4892200 4206000 5502600 7718400 6988800 11080000 548810 13143000 7891700 11762000 9237200 5331400 4627300 5349000 7336900 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 851030000 851030000 0 14461 1517 13245 75806;75807;75808 91532;91533;91534 91534 3 NLDFQDVLDK Unmodified 1205.5928 0.59281755 3285 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog yes yes 0 0 0 0 By MS/MS By MS/MS 4.38 0.992 2 2 3 1 4 4 71.02 70.913 2;3 3.899E-14 23405 20211116_3442_TMUAki_TMT10x_S_F4 228.98 160.25 44464000 72300000 144880 80767000 47821000 49890000 46994000 36621000 41203000 39949000 53293000 41400000 67495000 3658600 81336000 45828000 52431000 47532000 38003000 42599000 38880000 51036000 8 8 4 8 8 8 8 8 8 8 8 15317000 23008000 70143 26186000 18371000 25636000 17490000 12343000 14515000 13381000 17231000 14263000 21480000 1378100 26482000 17597000 25852000 17694000 13252000 14993000 13026000 16538000 3 3 3 3 3 3 3 3 3 3 3 29146000 49292000 74741 54581000 29451000 24254000 29504000 24277000 26688000 26568000 36063000 27137000 46014000 2280500 54854000 28231000 26580000 29837000 24751000 27606000 25854000 34498000 5 5 1 5 5 5 5 5 5 5 5 3317400000 1664400000 1652900000 14462 3285 13246 75809;75810;75811;75812;75813;75814;75815;75816 91535;91536;91537;91538;91539;91540;91541;91542;91543 91541 9 NLDIERPTYTNLNR Unmodified 1717.8747 0.87474649 1417;2044;2007 P68363;P68366;P68366-2;Q71U36;Q71U36-2;Q9BQE3;P0DPH8;P0DPH7;P0DPH7-2;Q9NY65;Q9NY65-2;Q6PEY2 TUBA1B;TUBA4A;TUBA1A;TUBA1C;TUBA8;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-8 chain;Tubulin alpha-3E chain no no 0 0 0 1 By MS/MS By MS/MS 5.18 1.72 1 2 2 4 4 3 1 8 9 42.807 42.932 2;3 4.684E-51 10666 20211116_3444_TMUAki_TMT10x_S_F5 281.65 237.86 58887000 98376000 862970 108180000 122290000 141160000 83114000 91305000 145000000 99963000 98810000 54833000 91832000 5705400 110160000 116300000 140650000 88271000 95397000 143170000 97273000 96748000 23 23 18 23 23 23 23 22 23 23 23 46070000 75485000 643100 83402000 115620000 127620000 75366000 71448000 109450000 74868000 77878000 42897000 70465000 4532500 85185000 109870000 126020000 79607000 75581000 108740000 72979000 76104000 14 14 11 14 14 14 14 14 14 14 14 12818000 22892000 219860 24777000 6664300 13542000 7747900 19856000 35551000 25096000 20932000 11936000 21367000 1172900 24976000 6430100 14631000 8663100 19816000 34432000 24294000 20644000 9 9 7 9 9 9 9 8 9 9 9 44529000000 26248000000 18281000000 14463 1417;2044;2007 13247 75817;75818;75819;75820;75821;75822;75823;75824;75825;75826;75827;75828;75829;75830;75831;75832;75833 91544;91545;91546;91547;91548;91549;91550;91551;91552;91553;91554;91555;91556;91557;91558;91559;91560;91561;91562;91563;91564;91565;91566;91567;91568 91562 25 NLDLAVLELMQSSVDNTK Unmodified 1989.0089 0.0088567119 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 5.75 0.829 2 1 1 1 3 81.2 81.217 3 1.1633E-08 26597 20211116_3445_TMUAki_TMT10x_S_F6 116.6 98.804 3964300 6251800 62105 6852500 4736000 3555400 5301000 2052100 1989200 2578900 4408000 3691200 5835800 347250 6899000 4555800 3791600 5245000 2178100 2254500 2497000 4177300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3964300 6251800 62105 6852500 4736000 3555400 5301000 2052100 1989200 2578900 4408000 3691200 5835800 347250 6899000 4555800 3791600 5245000 2178100 2254500 2497000 4177300 2 2 1 2 2 2 2 2 2 2 2 1787700000 0 1787700000 14464 1433 13248 75834;75835;75836;75837 91569;91570;91571 91571 3 NLDPEQMSQVLDAMFEK Unmodified 1993.9125 0.91251349 886 P31323 PRKAR2B cAMP-dependent protein kinase type II-beta regulatory subunit yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 81.478 81.477 3 0.095192 26356 20211116_3434_TMUAki_TMT10x_P_F6 25.528 7.8273 4033700 6121900 0 6473100 4070000 4844000 4253900 2282200 2851600 3455900 4414000 3754800 5713700 204250 6554500 3898600 4977700 4261900 2484800 3017800 3326800 4209600 2 2 0 2 2 2 2 2 2 2 2 2644000 3764100 0 3945800 2218300 3452700 2187300 1488100 1761300 1940800 2735000 2460800 3513000 95465 4005100 2118600 3503600 2207100 1625700 1845000 1876800 2608200 1 1 0 1 1 1 1 1 1 1 1 1389800 2357800 0 2527400 1851700 1391300 2066600 794150 1090300 1515100 1678900 1293900 2200700 108780 2549400 1780000 1474100 2054800 859160 1172800 1450000 1601400 1 1 0 1 1 1 1 1 1 1 1 188220000 87746000 100480000 14465 886 13249 75838;75839 91572;91573 91572 2 NLDPFLLFDEFK Unmodified 1496.7551 0.75513185 105 O00625 PIR Pirin yes yes 0 0 0 0 By MS/MS By MS/MS 5.4 0.8 1 1 3 2 3 82.261 82.267 2;3 0.00055771 27019 20211116_3445_TMUAki_TMT10x_S_F6 83.226 56.337 3006200 5079200 60384 4857100 3919800 4180100 3965500 2975000 2775200 3198100 4186400 2799400 4738600 298770 4960600 3762100 4273100 3983100 3092300 2925500 3114200 3994800 5 5 4 5 5 5 5 5 5 5 5 927870 1528100 56514 1569700 886430 1650800 968050 994780 984580 1003100 1344000 864360 1426000 129020 1599600 855420 1662000 978180 1044800 1013700 979300 1285400 2 2 2 2 2 2 2 2 2 2 2 2078400 3551200 3869.9 3287400 3033400 2529300 2997400 1980300 1790700 2195000 2842400 1935000 3312600 169750 3361000 2906600 2611100 3004900 2047500 1911800 2134900 2709400 3 3 2 3 3 3 3 3 3 3 3 336160000 135620000 200540000 14466 105 13250 75840;75841;75842;75843;75844 91574;91575;91576;91577;91578 91577 5 NLDPLVYLLSK Unmodified 1273.7282 0.72818882 2650 Q9BSJ2;Q9BSJ2-4 TUBGCP2 Gamma-tubulin complex component 2 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 80.717 80.705 3 0.010804 28045 20211116_3429_TMUAki_TMT10x_P_F2 59.227 7.8682 5709900 9241400 110800 8370100 6356000 6690500 7577700 4426700 4244400 4793800 6370600 5317300 8620000 585690 8575400 6131800 6868500 7519300 4626000 4539300 4666800 6079700 3 3 3 3 3 3 3 3 3 3 3 2454000 3859100 11263 3291700 2229900 3422000 2976700 1894600 1744000 2047300 2683900 2285000 3598800 210810 3400100 2157600 3443700 2942100 2008000 1861500 1993200 2559900 1 1 1 1 1 1 1 1 1 1 1 3255900 5382300 99532 5078500 4126100 3268500 4601100 2532000 2500400 2746500 3686700 3032300 5021200 374880 5175300 3974300 3424800 4577200 2618000 2677800 2673500 3519700 2 2 2 2 2 2 2 2 2 2 2 654340000 391970000 262370000 14467 2650 13251 75845;75846 91579;91580;91581 91579 3 NLDSLEEDLDFLRDQFTTTEVNMAR Oxidation (M) 2987.3818 0.38184508 1318 P61758;P61758-2 VBP1 Prefoldin subunit 3 yes no 0 0 1 1 By MS/MS By matching 1.5 0.5 1 1 1 1 80.794 80.786 4 0.00070916 26621 20211116_3428_TMUAki_TMT10x_P_F1 61.602 53.703 1120700 1802500 0 1756200 1277900 2457100 1661400 1059500 1483600 1412100 1894700 1043500 1681700 0 1805400 1235000 2428500 1659700 1158400 1531600 1364600 1815000 1 1 0 1 1 1 1 1 1 1 1 1120700 1802500 0 1756200 1277900 2457100 1661400 1059500 1483600 1412100 1894700 1043500 1681700 0 1805400 1235000 2428500 1659700 1158400 1531600 1364600 1815000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1033100000 847010000 186100000 14468 1318 13252 75847;75848 91582 91582 1773 1 NLDVQLLDTKR Unmodified 1313.7303 0.73031409 641 P12270 TPR Nucleoprotein TPR yes yes 0 0 0 1 By MS/MS 6 0 1 1 51.753 51.854 3 0.027749 14203 20211116_3434_TMUAki_TMT10x_P_F6 57.212 41.322 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14469 641 13253 75849 91583 91583 1 NLEALALDLMEPEQAVDLTLPK Oxidation (M) 2438.2614 0.26144258 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 1 0 By MS/MS By MS/MS 3.24 1.65 5 6 7 3 4 4 14 15 80.938 80.923 2;3;4 6.1092E-27 28021 20211116_3429_TMUAki_TMT10x_P_F2 177.88 163.85 105640000 186980000 626050 149240000 126380000 197890000 138570000 160720000 161650000 157510000 162070000 98356000 174330000 7262700 155650000 121450000 197760000 140630000 165190000 163460000 153960000 156330000 38 38 11 38 38 38 38 38 38 38 38 59560000 103160000 408690 85810000 57822000 130250000 69101000 91979000 92827000 87211000 90383000 55454000 96196000 4169700 89431000 55704000 129090000 70237000 95307000 93311000 85371000 87265000 22 22 8 22 22 22 22 22 22 22 22 46078000 83818000 217360 63433000 68554000 67640000 69469000 68739000 68823000 70295000 71683000 42902000 78135000 3093000 66215000 65743000 68672000 70398000 69880000 70145000 68590000 69061000 16 16 3 16 16 16 16 16 16 16 16 49844000000 28881000000 20963000000 14470 647 13254 75850;75851;75852;75853;75854;75855;75856;75857;75858;75859;75860;75861;75862;75863;75864;75865;75866;75867;75868;75869;75870;75871;75872;75873;75874;75875;75876;75877;75878 91584;91585;91586;91587;91588;91589;91590;91591;91592;91593;91594;91595;91596;91597;91598;91599;91600;91601;91602;91603;91604;91605;91606;91607;91608;91609;91610;91611;91612;91613;91614;91615;91616;91617;91618;91619;91620;91621;91622;91623 91593 694 40 NLEALALDLMEPEQAVDLTLPK Unmodified 2422.2665 0.26652796 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 By MS/MS By MS/MS 3.62 1.55 1 3 2 3 2 2 5 8 82.755 82.752 3;4 2.7587E-35 27587 20211116_3440_TMUAki_TMT10x_S_F2 185.92 171.31 25081000 39358000 300180 39939000 28817000 29413000 29980000 15939000 13172000 17441000 29255000 23354000 36727000 2260900 40546000 27670000 30311000 29829000 16930000 14707000 16972000 27723000 20 20 12 20 20 20 20 20 20 20 20 12106000 18113000 231530 18788000 12137000 17844000 14337000 7246700 6274800 8323800 14077000 11273000 16904000 1185300 19105000 11705000 17998000 14178000 7935000 7013200 8085100 13338000 8 8 6 8 8 8 8 8 8 8 8 12975000 21245000 68651 21151000 16680000 11570000 15643000 8691800 6897700 9117500 15178000 12081000 19824000 1075600 21441000 15965000 12313000 15651000 8995200 7693700 8887100 14385000 12 12 6 12 12 12 12 12 12 12 12 5101500000 2345600000 2755900000 14471 647 13254 75879;75880;75881;75882;75883;75884;75885;75886;75887;75888;75889;75890;75891 91624;91625;91626;91627;91628;91629;91630;91631;91632;91633;91634;91635;91636;91637;91638;91639;91640;91641;91642;91643 91632 20 NLEAQHK Unmodified 838.42972 0.42971539 1838 Q16181;Q16181-2 SEPT7 Septin-7 yes no 0 0 0 0 By MS/MS 3 0 1 1 27.601 27.317 3 0.082135 8018 20211116_3441_TMUAki_TMT10x_S_F3 42.109 18.68 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14472 1838 13255 75892 91644 91644 1 NLEASAVIQGLVK Unmodified 1340.7664 0.76636524 2141 Q8IWA0 WDR75 WD repeat-containing protein 75 yes yes 0 0 0 0 By MS/MS 7 0 1 1 70.988 71.231 3 0.00024831 24580 20211116_3446_TMUAki_TMT10x_S_F7 80.96 59.402 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14473 2141 13256 75893 91645 91645 1 NLEAVETLGSTSTICSDK Unmodified 1923.9095 0.9095366 497 P05023;P05023-3;P05023-4;P05023-2;P13637;P13637-2;P13637-3;P50993;Q13733 ATP1A1;ATP1A3;ATP1A2;ATP1A4 Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4 yes no 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 2 3 61.198 61.261 3 3.1475E-15 21683 20211116_3441_TMUAki_TMT10x_S_F3 126.14 107.78 20267000 32544000 160390 35082000 20707000 21208000 18630000 19879000 18591000 18667000 23297000 18869000 30377000 1483400 35402000 19790000 22431000 19005000 20242000 19082000 18281000 22329000 6 6 3 6 6 6 6 6 6 6 6 5621200 9618600 0 9856000 7548400 10192000 7129500 5995300 5531200 5161300 6519400 5233200 8976100 400530 10043000 7221200 10268000 7204200 6282500 5732100 5075200 6258400 2 2 0 2 2 2 2 2 2 2 2 14646000 22926000 160390 25226000 13159000 11016000 11501000 13883000 13060000 13506000 16778000 13636000 21401000 1082800 25359000 12569000 12164000 11801000 13960000 13350000 13206000 16070000 4 4 3 4 4 4 4 4 4 4 4 4028800000 2401100000 1627600000 14474 497 13257 75894;75895;75896;75897;75898 91646;91647;91648;91649;91650;91651;91652 91648 7 NLEAYAANPHSFVFTR Unmodified 1835.8955 0.89548193 2900 Q9NQ55;Q9NQ55-2;Q9NQ55-3 PPAN Suppressor of SWI4 1 homolog yes no 0 0 0 0 By MS/MS 4.5 3.5 1 1 2 56.62 56.582 3 7.4278E-11 16247 20211116_3447_TMUAki_TMT10x_S_F8 132.14 115.91 9455300 16176000 172370 16199000 9765500 8557800 8339000 13491000 12044000 11352000 12931000 8805100 15094000 948900 16409000 9338200 9300300 8647900 13403000 12122000 11175000 12447000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9455300 16176000 172370 16199000 9765500 8557800 8339000 13491000 12044000 11352000 12931000 8805100 15094000 948900 16409000 9338200 9300300 8647900 13403000 12122000 11175000 12447000 3 3 3 3 3 3 3 3 3 3 3 620080000 0 620080000 14475 2900 13258 75899;75900 91653;91654;91655;91656 91655 4 NLEEEENLGKGEYQESLR Unmodified 2135.9971 0.99710605 1080 P48681 NES Nestin yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 48.717 48.544 3 2.5813E-63 15468 20211116_3439_TMUAki_TMT10x_S_F1 264.03 238.87 26855000 51757000 200800 56490000 36161000 44946000 27998000 28027000 29846000 27052000 35212000 25006000 48313000 2509600 57122000 34477000 46120000 28884000 29321000 30473000 26460000 33801000 9 9 6 9 9 9 9 9 9 9 9 16246000 30582000 62805 33000000 29212000 37197000 22394000 16810000 18091000 16438000 20562000 15127000 28545000 1552700 33557000 27840000 37176000 22938000 18109000 18681000 16069000 19758000 6 6 3 6 6 6 6 6 6 6 6 10609000 21176000 138000 23491000 6948600 7749200 5604400 11217000 11755000 10614000 14650000 9879500 19768000 956930 23565000 6637200 8943300 5945400 11212000 11792000 10391000 14043000 3 3 3 3 3 3 3 3 3 3 3 2922200000 1790500000 1131700000 14476 1080 13259 75901;75902;75903;75904;75905;75906 91657;91658;91659;91660;91661;91662;91663;91664;91665 91663 9 NLEGYVGFANLPNQVYR Unmodified 1952.9745 0.97446054 1838 Q16181;Q16181-2 SEPT7 Septin-7 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 4 4 4 4 72.633 72.564 2;3 6.6763E-162 22796 20211116_3447_TMUAki_TMT10x_S_F8 416.66 376.82 21482000 36584000 105660 32036000 24061000 30997000 25887000 21995000 21357000 22379000 27435000 20001000 34120000 1261100 32988000 23106000 31439000 26023000 22829000 22141000 21840000 26278000 10 10 3 10 10 10 10 10 10 10 10 8621900 14420000 24043 12473000 8224200 15993000 9517900 8557900 7922700 8952600 10634000 8026700 13448000 567970 12915000 7909100 15908000 9537300 9088100 8226000 8727300 10174000 3 3 1 3 3 3 3 3 3 3 3 12860000 22164000 81615 19563000 15837000 15004000 16369000 13437000 13434000 13426000 16802000 11974000 20672000 693120 20073000 15197000 15531000 16486000 13741000 13915000 13113000 16104000 7 7 2 7 7 7 7 7 7 7 7 9956100000 5500600000 4455400000 14477 1838 13260 75907;75908;75909;75910;75911;75912;75913;75914 91666;91667;91668;91669;91670;91671;91672;91673;91674;91675;91676 91675 11 NLEGYVGFANLPNQVYRK Unmodified 2081.0694 0.069423554 1838 Q16181;Q16181-2 SEPT7 Septin-7 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 66.096 65.774 3 1.7301E-71 22530 20211116_3430_TMUAki_TMT10x_P_F3 295.12 263.73 27278000 46042000 482340 44657000 36714000 40403000 32344000 31727000 29967000 29096000 35371000 25402000 42957000 2843200 45592000 35122000 41227000 32963000 32617000 30782000 28525000 33954000 6 6 6 6 6 6 6 6 6 6 6 14906000 25078000 164810 24866000 16357000 28530000 18611000 18064000 17182000 16863000 18465000 13881000 23400000 1409800 25437000 15751000 28603000 18716000 18859000 17587000 16519000 17773000 3 3 3 3 3 3 3 3 3 3 3 12371000 20964000 317540 19791000 20357000 11873000 13733000 13662000 12785000 12233000 16906000 11521000 19558000 1433400 20154000 19371000 12624000 14247000 13758000 13195000 12006000 16181000 3 3 3 3 3 3 3 3 3 3 3 5794300000 2825000000 2969300000 14478 1838 13261 75915;75916;75917;75918 91677;91678;91679;91680;91681;91682 91679 6 NLEPALPGR Unmodified 965.52943 0.52942943 1751 Q15014 MORF4L2 Mortality factor 4-like protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 3 1 2 40.888 41.05 2 0.00042852 11088 20211116_3442_TMUAki_TMT10x_S_F4 88.177 62.727 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14479 1751 13262 75919;75920;75921 91683;91684;91685 91684 3 NLEPEWAAAASEVK Unmodified 1513.7413 0.7412727 1769 Q15084;Q15084-5;Q15084-3;Q15084-4;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 0 By MS/MS By MS/MS 3.25 0.661 1 4 3 4 4 65.72 65.414 2;3 8.5732E-44 22402 20211116_3430_TMUAki_TMT10x_P_F3 274.59 229.57 38400000 63012000 543460 62597000 46838000 47263000 44930000 30462000 27281000 31784000 44486000 35757000 58795000 3637100 63659000 44884000 48717000 45128000 31859000 29137000 30988000 42382000 9 9 6 9 9 9 9 9 9 9 9 16759000 26121000 145230 25630000 20387000 28412000 21956000 14230000 12274000 13497000 19599000 15605000 24372000 1574900 26224000 19596000 28454000 21889000 15162000 13171000 13212000 18679000 4 4 3 4 4 4 4 4 4 4 4 21641000 36890000 398230 36966000 26452000 18851000 22975000 16232000 15007000 18287000 24888000 20151000 34423000 2062200 37435000 25289000 20263000 23239000 16698000 15966000 17775000 23702000 5 5 3 5 5 5 5 5 5 5 5 3618700000 1559700000 2059100000 14480 1769 13263 75922;75923;75924;75925;75926;75927;75928;75929 91686;91687;91688;91689;91690;91691;91692;91693;91694;91695 91688 10 NLEQYNKLDQDLNEVK Unmodified 1961.9694 0.96943474 3219 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 1 By MS/MS By MS/MS 4.83 0.687 2 3 1 3 3 59.298 59.35 3;4 1.4827E-42 18726 20211116_3442_TMUAki_TMT10x_S_F4 219.58 166.76 64796000 114050000 1366300 111820000 82367000 93952000 70408000 91812000 91551000 88915000 95541000 60340000 106420000 6673200 113970000 78746000 96767000 72698000 93370000 92354000 86959000 92041000 11 11 9 11 11 11 11 11 11 11 11 19635000 33566000 587420 35126000 32377000 48354000 28913000 26337000 26752000 27440000 28552000 18287000 31326000 2353800 35922000 30993000 47949000 29442000 27922000 27374000 26754000 27487000 4 4 4 4 4 4 4 4 4 4 4 45161000 80488000 778870 76698000 49990000 45598000 41495000 65476000 64800000 61475000 66989000 42053000 75090000 4319400 78047000 47752000 48817000 43256000 65448000 64980000 60205000 64554000 7 7 5 7 7 7 7 7 7 7 7 3933600000 1902300000 2031200000 14481 3219 13264 75930;75931;75932;75933;75934;75935 91696;91697;91698;91699;91700;91701;91702;91703;91704;91705;91706 91703 11 NLESALR Unmodified 801.43447 0.43446642 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 35.453 35.366 2 0.023285 11736 20211116_3441_TMUAki_TMT10x_S_F3 84.498 15.114 988810 1561400 7885.9 1643500 986420 860210 1019200 1263900 1123900 1011200 1412200 920720 1457300 87562 1659100 947020 933710 1035400 1257100 1149100 997970 1353300 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 988810 1561400 7885.9 1643500 986420 860210 1019200 1263900 1123900 1011200 1412200 920720 1457300 87562 1659100 947020 933710 1035400 1257100 1149100 997970 1353300 3 3 2 3 3 3 3 3 3 3 3 54407000 0 54407000 14482 1695 13265 75936;75937 91707;91708;91709 91707 3 NLESHLMSPAEIPGQPVPK Oxidation (M) 2059.0408 0.040825542 2925 Q9NRA8;Q9NRA8-2;Q9NRA8-3 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter yes no 0 0 1 0 By MS/MS 6 0 1 1 49.915 50.015 3 0.0040596 13453 20211116_3434_TMUAki_TMT10x_P_F6 58.073 39.24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14483 2925 13266 75938 91710 91710 3025 1 NLETFCEETRR Unmodified 1453.662 0.66197652 3064 Q9P2J5;Q9P2J5-2 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 0 1 By MS/MS By MS/MS 2.33 0.943 1 3 1 1 3 3 35.588 35.537 3 1.1274E-11 10124 20211116_3429_TMUAki_TMT10x_P_F2 175.48 138.93 3801000 6169500 68746 7520300 11081000 7905800 5326000 5756900 6183600 4602800 6786700 3539400 5761900 460680 7582300 10483000 7981900 5729900 5927100 6274600 4542800 6528200 10 10 8 10 10 10 10 10 10 10 10 2480400 4144700 47054 4929200 9775300 6797300 4033100 3758800 4181700 2988800 4639200 2309700 3870400 332340 5001200 9230200 6741100 4395800 3952000 4263900 2950800 4461100 3 3 2 3 3 3 3 3 3 3 3 1320600 2024800 21691 2591100 1305700 1108600 1293000 1998100 2001800 1613900 2147600 1229800 1891500 128340 2581200 1252900 1240800 1334100 1975100 2010700 1592100 2067200 7 7 6 7 7 7 7 7 7 7 7 587320000 416830000 170490000 14484 3064 13267 75939;75940;75941;75942;75943;75944 91711;91712;91713;91714;91715;91716;91717;91718;91719;91720 91712 10 NLFASFPTEESSINYTFK Unmodified 2093.9946 0.99458686 1122 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 0 0 0 0 By matching By MS/MS 8 0 2 1 1 78.536 78.523 3 0.00020975 25218 20211116_3447_TMUAki_TMT10x_S_F8 66.12 54.506 3820500 5950400 11420 5855700 4546100 3595400 4380900 2636500 2373600 3227400 4556400 3557400 5552000 337550 5946600 4355600 3780700 4390300 2746700 2580000 3127700 4327800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3820500 5950400 11420 5855700 4546100 3595400 4380900 2636500 2373600 3227400 4556400 3557400 5552000 337550 5946600 4355600 3780700 4390300 2746700 2580000 3127700 4327800 1 1 1 1 1 1 1 1 1 1 1 1390600000 745500000 645100000 14485 1122 13268 75945;75946 91721 91721 1 NLFEDQNTLTSICEK Unmodified 1810.8407 0.84072875 1234 P55060;P55060-3;P55060-4 CSE1L Exportin-2 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.957 2 4 4 2 6 6 66.613 66.556 2;3 6.6035E-100 21649 20211116_3442_TMUAki_TMT10x_S_F4 364.34 339.48 105290000 178570000 1069500 170080000 124420000 183020000 125980000 130210000 121290000 122980000 140870000 98041000 166590000 9369300 174300000 119370000 184460000 127560000 134840000 124290000 120400000 135290000 23 23 13 23 23 23 23 23 23 23 23 70895000 116240000 679870 113420000 84316000 146930000 91244000 86206000 80233000 81651000 92236000 66011000 108460000 6146600 116400000 81026000 146250000 91850000 90577000 82532000 79933000 88606000 15 15 7 15 15 15 15 15 15 15 15 34398000 62324000 389600 56663000 40107000 36089000 34732000 44002000 41053000 41325000 48635000 32030000 58134000 3222700 57897000 38340000 38212000 35707000 44259000 41756000 40470000 46682000 8 8 6 8 8 8 8 8 8 8 8 13964000000 7295500000 6668700000 14486 1234 13269 75947;75948;75949;75950;75951;75952;75953;75954;75955;75956;75957;75958 91722;91723;91724;91725;91726;91727;91728;91729;91730;91731;91732;91733;91734;91735;91736;91737;91738;91739;91740;91741;91742;91743;91744 91740 23 NLFISCK Unmodified 880.44767 0.44767364 1006 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 0 0 By MS/MS By matching 1.67 0.471 1 2 2 1 51.307 51.171 2 0.0055975 16073 20211116_3429_TMUAki_TMT10x_P_F2 107.66 50.105 2417700 3879500 14011 3805600 6479900 6497900 3421300 4059100 3871100 3239000 3898800 2251200 3619700 270390 3927900 6137200 6398800 3644300 4225600 3919500 3197100 3760200 1 1 1 1 1 1 1 1 1 1 1 2417700 3879500 14011 3805600 6479900 6497900 3421300 4059100 3871100 3239000 3898800 2251200 3619700 270390 3927900 6137200 6398800 3644300 4225600 3919500 3197100 3760200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 369750000 312930000 56816000 14487 1006 13270 75959;75960;75961 91745 91745 1 NLFNVVDCK Unmodified 1107.5383 0.53827956 1249 P55884;P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 61.074 61.248 2 3.3419E-05 19883 20211116_3435_TMUAki_TMT10x_P_F7 122.13 92.973 29438000 49654000 76447 53907000 31827000 28619000 23500000 37253000 34603000 32506000 39439000 27408000 46349000 2310300 54316000 30297000 30909000 24616000 37299000 34889000 31943000 37896000 3 3 2 3 3 3 3 3 3 3 3 4654200 7584600 28200 8468000 8252200 10602000 6034000 5844700 5767900 5696900 5885500 4333700 7080500 462540 8608300 7858500 10562000 6228300 6178200 5883600 5569900 5673900 1 1 1 1 1 1 1 1 1 1 1 24783000 42070000 48248 45439000 23575000 18017000 17466000 31409000 28835000 26810000 33554000 23074000 39268000 1847800 45707000 22439000 20347000 18388000 31121000 29005000 26373000 32222000 2 2 1 2 2 2 2 2 2 2 2 2174300000 694740000 1479600000 14488 1249 13271 75962;75963;75964;75965 91746;91747;91748;91749 91747 4 NLFQLAR Unmodified 860.48684 0.48683634 325 O75351 VPS4B Vacuolar protein sorting-associated protein 4B yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 53.681 53.4 2 0.046423 17432 20211116_3430_TMUAki_TMT10x_P_F3 66.993 49.145 2246600 3464900 0 3779500 2182800 2746700 1908100 3260100 4007600 3634900 3814500 2091800 3234300 183700 3818100 2085900 2873400 2014800 3299900 3978300 3534600 3685700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2246600 3464900 0 3779500 2182800 2746700 1908100 3260100 4007600 3634900 3814500 2091800 3234300 183700 3818100 2085900 2873400 2014800 3299900 3978300 3534600 3685700 1 1 0 1 1 1 1 1 1 1 1 130200000 0 130200000 14489 325 13272 75966;75967;75968 91750;91751 91750 2 NLGFGMGIEFR Oxidation (M) 1255.6019 0.60194245 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 1 0 By MS/MS By MS/MS 6.71 1.03 1 2 2 2 4 3 60.946 61.175 2 0.0094233 20334 20211116_3446_TMUAki_TMT10x_S_F7 69.915 46.339 50137000 83201000 102470 78094000 62002000 89101000 60331000 70232000 69406000 71114000 70216000 46682000 77616000 4236800 80194000 59403000 89667000 61565000 72386000 70240000 69417000 67710000 6 6 2 6 6 6 6 6 6 6 6 26124000 40860000 39596 40316000 32918000 62412000 33125000 34994000 36828000 36622000 35651000 24323000 38125000 2159500 41498000 31562000 61602000 33704000 37012000 37263000 35700000 34428000 3 3 1 3 3 3 3 3 3 3 3 24013000 42341000 62869 37778000 29084000 26689000 27206000 35238000 32578000 34492000 34565000 22359000 39492000 2077300 38696000 27841000 28065000 27861000 35374000 32978000 33718000 33282000 3 3 1 3 3 3 3 3 3 3 3 8850400000 4593500000 4256900000 14490 3317 13273 75969;75970;75971;75972;75973;75974;75975 91752;91753;91754;91755;91756 91755 3283 5 NLGFSPEDREENVRR Unmodified 1816.8816 0.88162278 205 O43252 PAPSS1 Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes yes 0 0 0 2 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 32.733 32.626 4 3.6704E-30 10023 20211116_3441_TMUAki_TMT10x_S_F3 213.94 166.65 854340 1289700 8468.8 1550700 1844300 1560800 1007900 1081600 1160800 929310 1299000 795540 1204400 92588 1563700 1747800 1578600 1070800 1119300 1179100 913890 1248800 2 2 2 2 2 2 2 2 2 2 2 594310 877490 5053.9 1031100 1608600 1341600 766020 739330 776970 604980 866060 553400 819360 68189 1045700 1521600 1334100 821410 778070 793120 596390 832700 1 1 1 1 1 1 1 1 1 1 1 260030 412240 3414.9 519630 235620 219170 241870 342240 383820 324340 432950 242140 385060 24399 518030 226280 244570 249410 341220 386000 317500 416130 1 1 1 1 1 1 1 1 1 1 1 184410000 146390000 38018000 14491 205 13274 75976;75977 91757;91758 91758 2 NLGFTAIPLHGQMSQSK Oxidation (M) 1843.9251 0.9250675 2779 Q9H0S4 DDX47 Probable ATP-dependent RNA helicase DDX47 yes yes 0 0 1 0 By MS/MS 2 0 1 1 50.517 50.368 3 0.0039457 14446 20211116_3440_TMUAki_TMT10x_S_F2 61.167 43.028 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14492 2779 13275 75978 91759 91759 2944 1 NLGIPIITVLGDSK Unmodified 1438.8395 0.83953018 1672 Q14008;Q14008-2;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 By MS/MS 8 0 1 1 79.164 79.135 2 9.5451E-20 25449 20211116_3447_TMUAki_TMT10x_S_F8 159.5 137.35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14493 1672 13276 75979 91760 91760 1 NLGLEELGIELDPR Unmodified 1566.8253 0.82533668 582 P09622;P09622-3;P09622-2 DLD Dihydrolipoyl dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 2 3 77.88 77.782 2 3.1184E-19 28354 20211116_3441_TMUAki_TMT10x_S_F3 176.18 140.22 3616500 6625500 23222 5350500 5437000 4248700 5205200 3294000 3233300 3546200 4433100 3367400 6177500 346970 5532000 5208900 4374800 5230900 3404900 3418200 3453000 4239300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3616500 6625500 23222 5350500 5437000 4248700 5205200 3294000 3233300 3546200 4433100 3367400 6177500 346970 5532000 5208900 4374800 5230900 3404900 3418200 3453000 4239300 1 1 1 1 1 1 1 1 1 1 1 625550000 0 625550000 14494 582 13277 75980;75981;75982;75983;75984 91761;91762;91763;91764;91765 91765 5 NLGLYVK Unmodified 805.46979 0.46978929 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 By MS/MS By MS/MS 4 3.29 2 1 2 2 3 52.019 51.93 2 0.011479 14768 20211116_3428_TMUAki_TMT10x_P_F1 97.068 39.964 61422000 95579000 0 97431000 91400000 77664000 70462000 53849000 49943000 52751000 79220000 57186000 89192000 5029000 98969000 87080000 79803000 71932000 55919000 52745000 51565000 75514000 5 5 0 5 5 5 5 5 5 5 5 30277000 47425000 0 47357000 59237000 53411000 41915000 26463000 25942000 25450000 38119000 28190000 44252000 2778300 48408000 56355000 53432000 42928000 28236000 27523000 24898000 36395000 2 2 0 2 2 2 2 2 2 2 2 31145000 48154000 0 50073000 32162000 24253000 28546000 27386000 24001000 27301000 41101000 28996000 44940000 2250700 50561000 30725000 26371000 29004000 27683000 25222000 26667000 39119000 3 3 0 3 3 3 3 3 3 3 3 1628100000 963480000 664630000 14495 1730 13278 75985;75986;75987;75988;75989 91766;91767;91768;91769;91770 91766 5 NLGQNLWGPHR Unmodified 1290.6582 0.6581522 3056 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 42.124 42.007 3 2.5744E-07 12619 20211116_3430_TMUAki_TMT10x_P_F3 137.46 110.13 1114800 1923500 38502 2153100 3019700 3392400 1905100 1977400 2656600 1652000 2106100 1038300 1795700 154990 2198900 2869700 3347800 2013900 2072200 2650200 1626800 2048800 2 2 2 2 2 2 2 2 2 2 2 1114800 1923500 38502 2153100 3019700 3392400 1905100 1977400 2656600 1652000 2106100 1038300 1795700 154990 2198900 2869700 3347800 2013900 2072200 2650200 1626800 2048800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 249220000 249220000 0 14496 3056 13279 75990;75991;75992 91771;91772;91773 91772 3 NLGQPIK Unmodified 768.44939 0.4493882 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.816 1 1 1 2 1 36.518 36.731 2 0.0012871 9955 20211116_3435_TMUAki_TMT10x_P_F7 143.37 80.525 770190 1317400 2487.1 1087300 1235700 1345100 941260 630830 701700 640810 947250 717110 1228400 68809 1129300 1177300 1338300 962740 677730 733050 625440 906180 2 2 1 2 2 2 2 2 2 2 2 770190 1317400 2487.1 1087300 1235700 1345100 941260 630830 701700 640810 947250 717110 1228400 68809 1129300 1177300 1338300 962740 677730 733050 625440 906180 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 89450000 89450000 0 14497 916 13280 75993;75994;75995 91774;91775;91776 91775 3 NLGSINTELQDVQR Unmodified 1585.806 0.80599822 331 O75396 SEC22B Vesicle-trafficking protein SEC22b yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.667 4 4 1 4 5 54.208 54.114 2;3 1.9915E-60 16064 20211116_3431_TMUAki_TMT10x_P_F4 304.89 268.57 19114000 33539000 105900 34129000 26289000 32161000 22591000 26601000 25964000 24081000 28450000 17796000 31298000 1583800 34746000 25107000 32760000 23212000 27251000 26355000 23623000 27368000 11 11 6 11 11 11 11 11 11 11 11 10151000 17218000 67034 17257000 17912000 24309000 14608000 14580000 14467000 12891000 15034000 9450800 16066000 907670 17708000 17089000 24111000 14986000 15264000 14744000 12659000 14485000 5 5 3 5 5 5 5 5 5 5 5 8963300 16322000 38861 16872000 8377300 7851700 7982200 12021000 11498000 11190000 13416000 8345300 15232000 676160 17039000 8018800 8648900 8226100 11987000 11611000 10963000 12883000 6 6 3 6 6 6 6 6 6 6 6 3647400000 2376900000 1270500000 14498 331 13281 75996;75997;75998;75999;76000;76001;76002;76003;76004 91777;91778;91779;91780;91781;91782;91783;91784;91785;91786;91787;91788 91780 12 NLGTALAELR Unmodified 1056.5928 0.59275797 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 57.951 58.049 2 5.0091E-05 16746 20211116_3434_TMUAki_TMT10x_P_F6 132.57 71.977 21785000 37424000 167350 36786000 34801000 46134000 26353000 32518000 29996000 27969000 32412000 20284000 34918000 2038000 37713000 33160000 46116000 27286000 33613000 30442000 27504000 31192000 4 4 2 4 4 4 4 4 4 4 4 16287000 27563000 79102 28107000 28108000 41093000 21513000 24226000 22652000 20695000 23959000 15164000 25721000 1483200 28829000 26783000 40682000 22202000 25377000 23041000 20357000 23072000 3 3 1 3 3 3 3 3 3 3 3 5497900 9860700 88248 8679900 6693200 5041700 4840100 8292600 7343500 7274400 8453200 5119700 9196700 554800 8883900 6376500 5433600 5083900 8236800 7400600 7146500 8120100 1 1 1 1 1 1 1 1 1 1 1 1588600000 919080000 669570000 14499 3293 13282 76005;76006;76007 91789;91790;91791;91792 91791 4 NLGTIAK Unmodified 715.42284 0.4228391 672 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 By MS/MS By MS/MS 6.8 0.748 2 2 1 2 3 37.173 37.438 2 0.0055975 9099 20211116_3434_TMUAki_TMT10x_P_F6 107.66 2.274 4777400 7854500 52171 8500200 8531300 7786500 5813700 5823200 7119300 5348400 7952500 4448500 7331500 481750 8615300 8114200 7932300 6079600 6005500 7215100 5243100 7645700 5 5 3 5 5 5 5 5 5 5 5 2838100 4433200 28477 4676200 6647900 6081100 3822100 3228700 3925600 2998300 4628900 2642700 4137600 302210 4774300 6304100 6044300 4027900 3419700 4014100 2937800 4443600 2 2 1 2 2 2 2 2 2 2 2 1939300 3421300 23693 3824000 1883400 1705400 1991600 2594500 3193600 2350200 3323600 1805800 3193900 179540 3841000 1810100 1888000 2051700 2585700 3201000 2305300 3202200 3 3 2 3 3 3 3 3 3 3 3 205400000 133510000 71891000 14500 672 13283 76008;76009;76010;76011;76012 91793;91794;91795;91796;91797 91793 5 NLGVHISR Unmodified 894.50355 0.50354903 2166 Q8IYB5;Q8IYB5-3;Q8IYB5-2;Q8WU79;Q8WU79-2 SMAP1;SMAP2 Stromal membrane-associated protein 1;Stromal membrane-associated protein 2 yes no 0 0 0 0 By MS/MS 3 0 1 1 31.645 31.392 3 0.042517 9603 20211116_3441_TMUAki_TMT10x_S_F3 54.722 54.722 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14501 2166 13284 76013 91798 91798 1 NLGVVVAPHTLK Unmodified 1246.7398 0.73975656 2727 Q9BYD2 MRPL9 39S ribosomal protein L9, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 46.719 46.605 3 9.0565E-06 12916 20211116_3440_TMUAki_TMT10x_S_F2 101.89 84.157 5526700 9271200 69315 9900200 6774200 5771200 5374100 5517100 4965400 4765900 6887500 5146400 8653400 540270 9993700 6464400 6128200 5511700 5599800 5137500 4685600 6584600 3 3 3 3 3 3 3 3 3 3 3 1327500 2114100 3959.2 2289300 2329800 2201600 1471800 1314700 1286800 1178600 1651200 1236000 1973400 127790 2321800 2212600 2228300 1532000 1377400 1330100 1156700 1581600 1 1 1 1 1 1 1 1 1 1 1 4199200 7157100 65356 7610900 4444400 3569500 3902300 4202400 3678600 3587300 5236300 3910400 6680000 412490 7671900 4251800 3899900 3979700 4222400 3807400 3528900 5003100 2 2 2 2 2 2 2 2 2 2 2 403020000 319930000 83085000 14502 2727 13285 76014;76015;76016 91799;91800;91801 91800 3 NLHGDGIALWYTR Unmodified 1514.763 0.7630112 1577 Q12907 LMAN2 Vesicular integral-membrane protein VIP36 yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 53.218 53.459 3 3.401E-05 15545 20211116_3436_TMUAki_TMT10x_P_F8 98.676 79.433 10765000 16610000 156050 19692000 19444000 19199000 13350000 16371000 13124000 12585000 16299000 10023000 15511000 1087400 19864000 18495000 19526000 13853000 16674000 13474000 12448000 15625000 3 3 2 3 3 3 3 3 3 3 3 6612900 10092000 156050 11889000 14292000 15549000 9919200 9402900 7955100 8242400 9653300 6158400 9423900 801240 12057000 13603000 15476000 10229000 9835700 8239200 8097800 9259700 2 2 2 2 2 2 2 2 2 2 2 4151600 6517900 0 7802700 5152100 3650400 3430800 6968300 5168500 4343000 6645400 3865000 6086700 286200 7807200 4892100 4049400 3623800 6838800 5234400 4349800 6364800 1 1 0 1 1 1 1 1 1 1 1 1752200000 1039900000 712220000 14503 1577 13286 76017;76018;76019 91802;91803;91804 91803 3 NLHPDVTGR Unmodified 1007.5148 0.514842 1618 Q13309;Q13309-2 SKP2 S-phase kinase-associated protein 2 yes no 0 0 0 0 By MS/MS 4 0 1 1 28.312 28.356 3 0.036007 5727 20211116_3431_TMUAki_TMT10x_P_F4 46.033 27.302 213440 318850 6778.9 286060 297860 396360 233780 279040 196330 234470 301630 198780 297400 25195 295790 284400 394350 239320 288290 205110 230830 287710 1 1 1 1 1 1 1 1 1 1 1 213440 318850 6778.9 286060 297860 396360 233780 279040 196330 234470 301630 198780 297400 25195 295790 284400 394350 239320 288290 205110 230830 287710 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7210700 7210700 0 14504 1618 13287 76020 91805 91805 1 NLHQSGFSLSGAQIDDNIPR Unmodified 2168.061 0.061043713 1852 Q16555;Q16555-2 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 7.38 0.696 1 3 4 4 4 48.306 48.475 3;4 1.2286E-41 14693 20211116_3447_TMUAki_TMT10x_S_F8 206.8 188.66 17089000 29372000 66916 28912000 24800000 30978000 18459000 24267000 23112000 21469000 24192000 15911000 27405000 1450100 29559000 23616000 31280000 19200000 24928000 23347000 21083000 23304000 10 10 4 10 10 10 10 10 10 10 10 9602900 15607000 25844 15521000 16357000 23175000 11601000 13013000 12280000 11559000 12920000 8941000 14563000 862130 15955000 15563000 22909000 12037000 13700000 12486000 11349000 12444000 5 5 2 5 5 5 5 5 5 5 5 7486500 13765000 41072 13391000 8443000 7802800 6858700 11254000 10831000 9909700 11272000 6970300 12842000 587970 13604000 8052700 8371200 7162900 11228000 10861000 9733700 10860000 5 5 2 5 5 5 5 5 5 5 5 2812400000 1342900000 1469500000 14505 1852 13288 76021;76022;76023;76024;76025;76026;76027;76028 91806;91807;91808;91809;91810;91811;91812;91813;91814;91815;91816 91814 11 NLHQSGFSLSGAQIDDNIPRR Unmodified 2324.1622 0.16215474 1852 Q16555;Q16555-2 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 45.283 45.122 4 7.7128E-56 12292 20211116_3440_TMUAki_TMT10x_S_F2 234.11 221.84 1356300 2028600 2510.5 2364400 1809700 2283500 1475400 1543300 1599100 1610400 1816200 1262800 1894100 112710 2387100 1726400 2314700 1517900 1608500 1629100 1570000 1745300 2 2 1 2 2 2 2 2 2 2 2 867900 1150800 0 1406000 1428600 1843900 1123200 886980 932110 1016600 1099600 808030 1074700 71379 1422800 1361600 1829900 1149400 954000 962570 987570 1055600 1 1 0 1 1 1 1 1 1 1 1 488380 877790 2510.5 958450 381060 439620 352200 656360 667020 593760 716640 454750 819380 41327 964320 364800 484730 368510 654530 666560 582480 689780 1 1 1 1 1 1 1 1 1 1 1 346730000 241410000 105320000 14506 1852 13289 76029;76030 91817;91818 91818 2 NLHVVFTMNPSSEGLK Oxidation (M) 1787.8876 0.88761936 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 1 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 50.919 51.208 3 8.5326E-11 14609 20211116_3436_TMUAki_TMT10x_P_F8 130.72 107.58 9287000 15713000 88748 14796000 13463000 17370000 11469000 14287000 14890000 12776000 14227000 8647400 14659000 873330 15198000 12862000 17468000 11844000 14636000 14974000 12540000 13745000 5 5 3 5 5 5 5 5 5 5 5 5592900 9538300 65912 8745200 9661600 13700000 7636600 8480800 9047100 7552500 8311500 5207900 8897300 562980 9051700 9215900 13534000 7895600 8858300 9116100 7414400 8040500 3 3 2 3 3 3 3 3 3 3 3 3694100 6174900 22836 6050600 3801700 3670300 3832500 5806000 5842500 5223900 5915400 3439600 5761400 310350 6145800 3646200 3933900 3948100 5777900 5858300 5125900 5704100 2 2 1 2 2 2 2 2 2 2 2 2252300000 1447600000 804710000 14507 1695 13290 76031;76032;76033;76034 91819;91820;91821;91822;91823 91820 2281 5 NLHVVFTMNPSSEGLKDR Oxidation (M) 2059.0157 0.015673424 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 1 1 By MS/MS 7.5 0.5 1 1 2 44.055 44.314 4 1.3819E-06 11371 20211116_3447_TMUAki_TMT10x_S_F8 100.04 85.61 3214800 5729900 81410 6431100 3325200 3354400 2600900 7301700 6676600 5493600 6061400 2993900 5349200 343950 6465300 3175100 3695700 2802300 7170500 6592100 5439800 5866200 4 4 4 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3214800 5729900 81410 6431100 3325200 3354400 2600900 7301700 6676600 5493600 6061400 2993900 5349200 343950 6465300 3175100 3695700 2802300 7170500 6592100 5439800 5866200 4 4 4 4 4 4 4 4 4 4 4 216140000 0 216140000 14508 1695 13291 76035;76036 91824;91825;91826;91827 91826 2281 4 NLIAPIFLHR Unmodified 1192.7081 0.7080625 1755 Q15022 SUZ12 Polycomb protein SUZ12 yes yes 0 0 0 0 By MS/MS 4 0 1 1 59.714 59.844 3 3.1004E-05 18407 20211116_3431_TMUAki_TMT10x_P_F4 98.048 62.105 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14509 1755 13292 76037 91828 91828 1 NLIDAGVDALR Unmodified 1155.6248 0.62478638 640 P12268 IMPDH2 Inosine-5'-monophosphate dehydrogenase 2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 61.892 61.946 2 5.3697E-11 18410 20211116_3444_TMUAki_TMT10x_S_F5 168 101.31 28720000 49071000 566810 47807000 34970000 61365000 32063000 48394000 37330000 41111000 42316000 26745000 45783000 2996900 49063000 33492000 61387000 32838000 49640000 37924000 40451000 40666000 5 5 5 5 5 5 5 5 5 5 5 15436000 26296000 400650 26297000 21618000 48132000 18564000 29589000 19499000 23757000 23763000 14375000 24537000 1739700 27154000 20676000 47270000 19019000 30846000 19947000 23443000 22792000 3 3 3 3 3 3 3 3 3 3 3 13284000 22774000 166160 21510000 13353000 13233000 13499000 18804000 17831000 17354000 18553000 12370000 21246000 1257200 21909000 12817000 14116000 13819000 18794000 17976000 17009000 17875000 2 2 2 2 2 2 2 2 2 2 2 2707600000 1641400000 1066200000 14510 640 13293 76038;76039;76040;76041;76042 91829;91830;91831;91832;91833;91834 91834 6 NLILAGVK Unmodified 826.52764 0.52763852 3076 Q9UBE0;Q9UBE0-3;Q9UBE0-2 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 56.022 55.867 2 0.0018759 16380 20211116_3428_TMUAki_TMT10x_P_F1 112.17 55.068 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14511 3076 13294 76043;76044;76045 91835;91836;91837 91835 3 NLILVVR Unmodified 825.54362 0.54362294 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 53.435 53.263 2 0.0022242 15578 20211116_3440_TMUAki_TMT10x_S_F2 128.38 44.024 27914000 41558000 34879 44704000 30014000 31856000 28663000 25579000 22398000 24862000 31429000 25988000 38790000 2015200 45191000 28723000 33104000 28951000 26303000 23381000 24311000 30039000 7 7 1 7 7 7 7 7 7 7 7 11074000 16202000 0 17669000 14851000 18444000 12172000 9582000 8999800 9416400 12226000 10310000 15124000 884810 17933000 14167000 18542000 12388000 10185000 9409100 9203400 11694000 3 3 0 3 3 3 3 3 3 3 3 16840000 25356000 34879 27035000 15163000 13412000 16492000 15997000 13398000 15446000 19203000 15678000 23666000 1130400 27258000 14556000 14562000 16563000 16118000 13972000 15108000 18345000 4 4 1 4 4 4 4 4 4 4 4 2364700000 1284900000 1079800000 14512 1471 13295 76046;76047;76048;76049;76050;76051;76052;76053 91838;91839;91840;91841;91842;91843;91844 91843 7 NLIPFDQMTIEDLNEAFPETK Oxidation (M) 2480.1781 0.17810688 372 O75947;O75947-2 ATP5H ATP synthase subunit d, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 80.03 80.04 3 9.9555E-08 26706 20211116_3431_TMUAki_TMT10x_P_F4 95.957 82.769 1695700 2730500 0 2559700 1187900 3125600 2032700 2090400 1561700 1975600 2041200 1578700 2547200 114430 2631900 1159000 3126000 2003100 2174200 1626400 1934200 1954200 1 1 0 1 1 1 1 1 1 1 1 1695700 2730500 0 2559700 1187900 3125600 2032700 2090400 1561700 1975600 2041200 1578700 2547200 114430 2631900 1159000 3126000 2003100 2174200 1626400 1934200 1954200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 663870000 663870000 0 14513 372 13296 76054;76055 91845;91846 91845 289 2 NLIPFDQMTIEDLNEAFPETK Unmodified 2464.1832 0.18319226 372 O75947;O75947-2 ATP5H ATP synthase subunit d, mitochondrial yes no 0 0 0 0 By MS/MS 2 0 1 1 80.938 80.923 3 0.08306 26793 20211116_3440_TMUAki_TMT10x_S_F2 28.076 20.364 921740 2021600 58078 1842000 1259900 1157100 1452100 968740 802500 1028000 1391000 858670 1885700 135280 1881600 1216400 1216800 1442800 996230 865710 1001600 1323700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 921740 2021600 58078 1842000 1259900 1157100 1452100 968740 802500 1028000 1391000 858670 1885700 135280 1881600 1216400 1216800 1442800 996230 865710 1001600 1323700 1 1 1 1 1 1 1 1 1 1 1 337210000 0 337210000 14514 372 13296 76056 91847 91847 1 NLIPFDQMTIEDLNEAFPETKLDK Oxidation (M) 2836.3841 0.38407691 372 O75947;O75947-2 ATP5H ATP synthase subunit d, mitochondrial yes no 0 0 1 1 By MS/MS 5 0 1 1 79.131 79.146 4 0.033572 26603 20211116_3433_TMUAki_TMT10x_P_F5 40.404 29.888 2920700 4416100 31265 4147900 2713800 4987600 3174500 2863700 2732100 2857200 3651200 2719700 4119700 268390 4263000 2615600 4981500 3182200 3018600 2831400 2790800 3493700 1 1 1 1 1 1 1 1 1 1 1 2920700 4416100 31265 4147900 2713800 4987600 3174500 2863700 2732100 2857200 3651200 2719700 4119700 268390 4263000 2615600 4981500 3182200 3018600 2831400 2790800 3493700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 705630000 705630000 0 14515 372 13297 76057 91848 91848 289 1 NLISPDLGVVFLNVPENLK Unmodified 2080.1568 0.15684158 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.47 3.05 5 2 2 2 4 5 10 75.644 75.643 2;3 3.5961E-32 28592 20211116_3446_TMUAki_TMT10x_S_F7 195.97 171.93 81881000 123460000 386670 135040000 73476000 86837000 82499000 41330000 45371000 49326000 82176000 76234000 115240000 6048100 136230000 70639000 90415000 82061000 44557000 49088000 47845000 78133000 18 18 9 18 18 18 18 18 18 18 18 52462000 77308000 186270 84571000 42485000 63728000 44795000 24907000 28463000 30329000 51223000 48843000 72164000 3640700 85452000 40758000 65335000 44811000 27445000 30478000 29397000 48709000 9 9 4 9 9 9 9 9 9 9 9 29419000 46150000 200400 50473000 30991000 23109000 37704000 16423000 16908000 18997000 30952000 27391000 43079000 2407400 50776000 29881000 25080000 37250000 17112000 18610000 18447000 29424000 9 9 5 9 9 9 9 9 9 9 9 20028000000 11797000000 8230700000 14516 1057 13298 76058;76059;76060;76061;76062;76063;76064;76065;76066;76067;76068;76069;76070;76071;76072 91849;91850;91851;91852;91853;91854;91855;91856;91857;91858;91859;91860;91861;91862;91863;91864;91865;91866;91867;91868;91869 91866 21 NLISPDLGVVFLNVPENLKNPEPNIK Unmodified 2872.5698 0.56984427 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.36 3.17 3 3 1 4 4 7 73.647 73.615 3;4 4.1256E-13 25987 20211116_3428_TMUAki_TMT10x_P_F1 120.63 107.04 29344000 50664000 372930 33089000 38180000 53830000 40684000 39042000 35066000 37889000 42993000 27323000 47210000 2606500 35308000 36675000 53227000 40963000 40407000 36201000 37052000 41229000 12 12 6 12 12 12 12 12 12 12 12 15299000 26507000 101420 16280000 15812000 35533000 21665000 20910000 19005000 20421000 23105000 14243000 24696000 1083200 17619000 15296000 34683000 21587000 21983000 19596000 19965000 22162000 7 7 2 7 7 7 7 7 7 7 7 14045000 24157000 271510 16809000 22368000 18297000 19020000 18132000 16061000 17467000 19888000 13079000 22514000 1523400 17689000 21379000 18544000 19376000 18424000 16605000 17087000 19067000 5 5 4 5 5 5 5 5 5 5 5 17350000000 5588500000 11762000000 14517 1057 13299 76073;76074;76075;76076;76077;76078;76079;76080;76081;76082;76083 91870;91871;91872;91873;91874;91875;91876;91877;91878;91879;91880;91881;91882 91870 13 NLISPELGVVFFNVPEK Unmodified 1901.0299 0.02985015 1435 P78559;P78559-2 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 80.325 80.328 3 3.1541E-11 25931 20211116_3447_TMUAki_TMT10x_S_F8 133.28 119.6 9287600 15186000 0 13221000 10565000 14306000 11319000 8000800 8680300 9499300 12126000 8647500 14163000 397810 13642000 10147000 14365000 11360000 8497800 9068400 9215800 11591000 3 3 0 3 3 3 3 3 3 3 3 5895500 9272200 0 8329700 5222400 10269000 6017100 5014400 5660900 6248000 7585600 5489300 8648400 113550 8593200 5027100 10224000 6050800 5400500 5842900 6051300 7258000 2 2 0 2 2 2 2 2 2 2 2 3392100 5913600 0 4891100 5342400 4036600 5301900 2986400 3019300 3251300 4540900 3158200 5514200 284270 5049200 5120000 4141400 5309400 3097300 3225500 3164500 4333300 1 1 0 1 1 1 1 1 1 1 1 2264400000 1483600000 780870000 14518 1435 13300 76084;76085;76086;76087 91883;91884;91885;91886 91886 4 NLKLEGTEDLSDVLVR Unmodified 1799.9629 0.9628928 1746 Q15003;Q15003-2 NCAPH Condensin complex subunit 2 yes no 0 0 0 1 By MS/MS By MS/MS 4.75 0.829 2 1 1 3 1 64.808 64.881 3 4.9975E-30 20490 20211116_3431_TMUAki_TMT10x_P_F4 170.89 147.53 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14519 1746 13301 76088;76089;76090;76091 91887;91888;91889;91890 91887 4 NLKPIKPMQFLGDEETVR Oxidation (M) 2130.1143 0.11432484 722 P18669 PGAM1 Phosphoglycerate mutase 1 yes yes 0 0 1 2 By MS/MS By MS/MS 5 2.89 2 1 2 1 4 2 50.52 50.596 3;4 5.0381E-12 15410 20211116_3435_TMUAki_TMT10x_P_F7 128.94 110.41 42368000 71779000 3068500 85530000 44262000 62180000 41198000 65907000 64704000 58967000 66671000 39471000 67029000 6398900 85934000 42550000 64869000 42676000 66614000 64866000 57877000 64254000 7 7 7 7 7 7 7 7 7 7 7 11582000 20259000 435730 18064000 21117000 35093000 17835000 24096000 21835000 19783000 19685000 10787000 18896000 1499800 18838000 20192000 34453000 18386000 24925000 21962000 19499000 19056000 4 4 4 4 4 4 4 4 4 4 4 30786000 51520000 2632800 67466000 23145000 27087000 23363000 41812000 42869000 39185000 46985000 28684000 48133000 4899000 67096000 22358000 30416000 24290000 41689000 42904000 38378000 45197000 3 3 3 3 3 3 3 3 3 3 3 5683700000 2997900000 2685700000 14520 722 13302 76092;76093;76094;76095;76096;76097 91891;91892;91893;91894;91895;91896 91894 829 6 NLKPIKPMQFLGDEETVR Unmodified 2114.1194 0.11941021 722 P18669 PGAM1 Phosphoglycerate mutase 1 yes yes 0 0 0 2 By MS/MS By MS/MS 5.5 3.2 2 1 3 3 3 62.237 62.333 4 9.2488E-32 19217 20211116_3439_TMUAki_TMT10x_S_F1 197.1 170.26 102270000 167630000 1469100 153690000 125600000 140620000 135430000 59429000 44993000 67606000 113370000 95234000 156370000 10118000 157580000 120760000 142240000 134060000 64766000 52156000 65691000 107250000 9 9 8 9 9 9 9 9 9 9 9 67232000 110830000 1283400 101480000 90167000 113900000 101620000 39976000 30620000 45958000 75681000 62610000 103380000 7091400 104370000 86822000 113610000 100280000 44555000 35856000 44639000 71612000 5 5 5 5 5 5 5 5 5 5 5 35038000 56807000 185610 52212000 35431000 26721000 33810000 19453000 14374000 21648000 37688000 32625000 52990000 3026900 53209000 33940000 28630000 33778000 20211000 16300000 21052000 35635000 4 4 3 4 4 4 4 4 4 4 4 10305000000 6934500000 3370000000 14521 722 13302 76098;76099;76100;76101;76102;76103 91897;91898;91899;91900;91901;91902;91903;91904;91905 91902 9 NLLDDVEEFHER Unmodified 1514.7001 0.70013617 852 P29375;P29375-2 KDM5A Lysine-specific demethylase 5A yes no 0 0 0 0 By MS/MS 1 0 1 1 58.741 58.741 3 0.00013773 17588 20211116_3428_TMUAki_TMT10x_P_F1 85.45 71.292 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14522 852 13303 76104 91906 91906 1 NLLDHLTR Unmodified 980.54033 0.54032847 3164 Q9UL03;Q9UL03-3 INTS6 Integrator complex subunit 6 yes no 0 0 0 0 By MS/MS 7 0 1 1 40.432 41.064 3 0.0051981 12171 20211116_3446_TMUAki_TMT10x_S_F7 74.173 54.386 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14523 3164 13304 76105 91907 91907 1 NLLEISGPETVPLPNVPSIALPSKPAK Unmodified 2780.5688 0.56878164 2803 Q9H444 CHMP4B Charged multivesicular body protein 4b yes yes 0 0 0 1 By MS/MS By MS/MS 2.38 0.484 5 3 4 4 78.172 78.117 3;4;5 5.73E-13 27000 20211116_3429_TMUAki_TMT10x_P_F2 118.01 111.45 22625000 38530000 278760 34063000 26321000 33157000 28032000 18939000 21044000 22491000 26860000 21067000 35936000 1971700 35052000 25284000 33514000 28128000 20079000 21921000 21819000 25731000 7 7 3 7 7 7 7 7 7 7 7 11282000 18673000 109460 16453000 10573000 20596000 13538000 8602600 10223000 11506000 13066000 10505000 17416000 913280 17004000 10212000 20457000 13474000 9438700 10646000 11118000 12516000 3 3 2 3 3 3 3 3 3 3 3 11343000 19857000 169290 17610000 15748000 12561000 14494000 10336000 10821000 10984000 13794000 10562000 18520000 1058500 18048000 15072000 13058000 14654000 10641000 11275000 10701000 13214000 4 4 1 4 4 4 4 4 4 4 4 14465000000 7509900000 6954700000 14524 2803 13305 76106;76107;76108;76109;76110;76111;76112;76113 91908;91909;91910;91911;91912;91913;91914 91909 7 NLLEKYK Unmodified 906.51747 0.51746776 2585 Q99575 POP1 Ribonucleases P/MRP protein subunit POP1 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.707 1 2 1 2 2 50.751 50.933 3 0.063792 13962 20211116_3444_TMUAki_TMT10x_S_F5 49.813 23.874 7275300 11735000 96636 11322000 11770000 11709000 7558700 15711000 13456000 9927000 13774000 6774800 10948000 756190 11585000 11186000 11994000 8069900 15599000 13443000 9933500 13277000 2 2 2 2 2 2 2 2 2 2 2 3386600 4726400 85356 5202600 8202100 8136300 4409500 6207800 5364300 4167300 6805600 3153900 4412000 427760 5317700 7774400 8064500 4700600 6347900 5466600 4154100 6520500 1 1 1 1 1 1 1 1 1 1 1 3888800 7008100 11280 6119500 3567800 3572500 3149200 9503100 8092100 5759700 6968100 3620900 6536000 328420 6267600 3411100 3929800 3369300 9250800 7976200 5779400 6756600 1 1 1 1 1 1 1 1 1 1 1 811030000 634810000 176220000 14525 2585 13306 76114;76115;76116;76117 91915;91916;91917 91916 3 NLLHQDAVDLFR Unmodified 1439.7521 0.75211216 1264 P57105 SYNJ2BP Synaptojanin-2-binding protein yes yes 0 0 0 0 By matching By MS/MS 6 0 2 1 1 57.413 57.475 3 2.1851E-06 16886 20211116_3445_TMUAki_TMT10x_S_F6 115.34 92.106 4475400 7599800 2720.2 7952800 4644300 4119600 4146900 6075900 5714500 5636800 5927800 4166600 7092700 314990 8030900 4436900 4477200 4280900 6065700 5752500 5523300 5711700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4475400 7599800 2720.2 7952800 4644300 4119600 4146900 6075900 5714500 5636800 5927800 4166600 7092700 314990 8030900 4436900 4477200 4280900 6065700 5752500 5523300 5711700 2 2 1 2 2 2 2 2 2 2 2 836230000 188860000 647370000 14526 1264 13307 76118;76119 91918;91919 91918 2 NLLHVTDTGVGMTR Oxidation (M) 1528.7668 0.76677595 672 P14625 HSP90B1 Endoplasmin yes yes 0 0 1 0 By MS/MS By MS/MS 6 0.894 2 1 2 3 2 38.703 38.952 3 2.9654E-06 8794 20211116_3434_TMUAki_TMT10x_P_F6 103.6 88.973 4079700 6727400 67986 7599600 8812200 8058700 5316700 5413200 5928800 4675300 6109300 3799000 6280600 460650 7698100 8365400 8121900 5594700 5615200 6011200 4596500 5887900 6 6 4 6 6 6 6 6 6 6 6 2727500 4424200 58271 5132500 7338100 6710800 3956500 3754400 4215300 3163900 4265300 2540000 4130900 341470 5209500 6954400 6672700 4198000 3948700 4278700 3114300 4113100 4 4 3 4 4 4 4 4 4 4 4 1352200 2303200 9714.4 2467100 1474200 1347900 1360200 1658800 1713600 1511400 1844000 1259100 2149700 119180 2488500 1411000 1449200 1396600 1666500 1732400 1482200 1774800 2 2 1 2 2 2 2 2 2 2 2 587530000 460490000 127040000 14527 672 13308 76120;76121;76122;76123;76124 91920;91921;91922;91923;91924 91922 744 5 NLLHVTDTGVGMTR Unmodified 1512.7719 0.77186132 672 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 By matching By MS/MS 7 0 2 1 1 44.691 45.206 3 3.1314E-09 13846 20211116_3446_TMUAki_TMT10x_S_F7 122.66 103.92 1141100 2005400 23810 2242700 1079100 1027200 1005100 1337300 1371800 1260400 1651400 1062700 1872100 115930 2253000 1034300 1128400 1034700 1341700 1389400 1234100 1584400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1141100 2005400 23810 2242700 1079100 1027200 1005100 1337300 1371800 1260400 1651400 1062700 1872100 115930 2253000 1034300 1128400 1034700 1341700 1389400 1234100 1584400 1 1 1 1 1 1 1 1 1 1 1 478790000 285760000 193030000 14528 672 13308 76125;76126 91925 91925 1 NLLHVTDTGVGMTREELVK Oxidation (M) 2127.0994 0.099403054 672 P14625 HSP90B1 Endoplasmin yes yes 0 0 1 1 By MS/MS By MS/MS 5.46 0.929 2 5 4 2 6 7 48.188 48.404 3;4 1.4902E-17 14708 20211116_3435_TMUAki_TMT10x_P_F7 148.26 129.66 50820000 85505000 553760 89449000 82647000 110320000 56570000 81403000 83916000 72531000 74272000 47321000 79800000 4942700 91286000 78608000 110450000 59591000 83958000 83831000 71203000 71946000 18 18 13 18 18 18 18 18 18 18 18 34195000 54418000 415600 58300000 64300000 91565000 42986000 53883000 56158000 47208000 48407000 31840000 50793000 3430200 59699000 61129000 90381000 45124000 56486000 56280000 46381000 46936000 13 13 10 13 13 13 13 13 13 13 13 16626000 31086000 138150 31149000 18347000 18754000 13584000 27520000 27758000 25323000 25865000 15481000 29007000 1512500 31587000 17479000 20066000 14467000 27472000 27551000 24822000 25010000 5 5 3 5 5 5 5 5 5 5 5 10728000000 6376300000 4351800000 14529 672 13309 76127;76128;76129;76130;76131;76132;76133;76134;76135;76136;76137;76138;76139 91926;91927;91928;91929;91930;91931;91932;91933;91934;91935;91936;91937;91938;91939;91940;91941 91934 744 16 NLLHVTDTGVGMTREELVK Unmodified 2111.1045 0.10448843 672 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 53.442 53.88 4 3.028E-31 14971 20211116_3434_TMUAki_TMT10x_P_F6 182.76 163.98 30390000 50638000 380200 55050000 39729000 44765000 32245000 24709000 22869000 23839000 34592000 28299000 47267000 2984700 55695000 37928000 45787000 32808000 26109000 24091000 23318000 33007000 7 7 6 7 7 7 7 7 7 7 7 18768000 29857000 282010 33671000 27394000 34819000 22395000 14233000 13519000 14303000 20913000 17477000 27874000 1939600 34098000 26158000 34938000 22703000 15512000 14404000 13966000 19945000 4 4 4 4 4 4 4 4 4 4 4 11622000 20781000 98187 21379000 12335000 9946100 9849600 10476000 9349700 9536000 13680000 10822000 19393000 1045100 21597000 11770000 10849000 10105000 10596000 9687300 9352100 13062000 3 3 2 3 3 3 3 3 3 3 3 3908800000 2583100000 1325700000 14530 672 13309 76140;76141;76142 91942;91943;91944;91945;91946;91947;91948 91943 7 NLLSCVQEIHSR Unmodified 1454.73 0.72999651 2950 Q9NU22 MDN1 Midasin yes yes 0 0 0 0 By MS/MS 7 0 1 1 46.414 46.904 3 0.025906 14525 20211116_3446_TMUAki_TMT10x_S_F7 47.668 34.16 839870 1398100 10863 1430600 914270 754710 732250 1271700 1194000 1059500 1269200 782080 1304700 80797 1447000 872730 822160 766570 1260600 1197200 1043500 1222000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 839870 1398100 10863 1430600 914270 754710 732250 1271700 1194000 1059500 1269200 782080 1304700 80797 1447000 872730 822160 766570 1260600 1197200 1043500 1222000 1 1 1 1 1 1 1 1 1 1 1 98601000 0 98601000 14531 2950 13310 76143 91949 91949 1 NLLSLFEDTLDPT Unmodified 1476.7348 0.73479034 2595 Q99640;Q99640-4;Q99640-3 PKMYT1 Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase yes no 0 0 0 0 By MS/MS By MS/MS 2.43 0.904 1 3 2 1 5 2 84.994 84.987 2;3 5.1945E-18 28710 20211116_3431_TMUAki_TMT10x_P_F4 150.61 132.74 2110400 3468000 10580 3020900 2203200 3020900 2391300 2029200 2154700 2064200 2524900 1964800 3234400 149020 3113400 2115400 3055200 2408500 2114200 2215500 2014600 2424200 4 4 2 4 4 4 4 4 4 4 4 1362800 2112900 0 1820900 1215800 2066800 1379600 1221300 1296100 1224000 1510100 1268600 1970500 73819 1881900 1167500 2071300 1388200 1284500 1329800 1195300 1450200 2 2 0 2 2 2 2 2 2 2 2 747630 1355100 10580 1200000 987350 954150 1011700 807890 858650 840230 1014800 696200 1263900 75201 1231500 947970 983910 1020200 829750 885760 819280 974090 2 2 2 2 2 2 2 2 2 2 2 151870000 101980000 49892000 14532 2595 13311 76144;76145;76146;76147;76148;76149;76150 91950;91951;91952;91953;91954;91955;91956 91954 7 NLLSVAYK Unmodified 906.51747 0.51746776 1342;1395;825;895;1515;1331;896 P27348;P31946;P31946-2;P63104;P31947;P31947-2;P61981;P62258;P62258-2;Q04917 YWHAQ;YWHAB;YWHAZ;SFN;YWHAG;YWHAE;YWHAH 14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein sigma;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein epsilon;14-3-3 protein eta no no 0 0 0 0 By MS/MS By MS/MS 3.08 2.47 4 3 2 1 2 5 7 56.777 56.626 2;3 0.00042968 16627 20211116_3428_TMUAki_TMT10x_P_F1 146.81 102.67 185780000 326800000 2731900 337180000 375720000 375190000 200920000 379780000 388170000 288750000 331470000 172990000 304970000 19941000 343810000 355980000 379980000 218740000 383020000 384630000 285760000 321510000 12 12 8 12 12 12 12 11 11 11 11 76375000 137880000 1063600 144330000 278090000 269620000 113600000 165470000 184130000 123010000 146860000 71121000 128680000 10148000 148660000 262580000 264610000 126010000 172220000 182920000 121890000 142820000 4 4 4 4 4 4 4 4 4 4 4 109400000 188910000 1668300 192840000 97627000 105570000 87325000 214310000 204030000 165740000 184610000 101870000 176290000 9792600 195150000 93408000 115380000 92729000 210790000 201720000 163870000 178690000 8 8 4 8 8 8 8 7 7 7 7 35461000000 21421000000 14040000000 14533 825;895;1395;896;1331;1342;1515 13312 76151;76152;76153;76154;76155;76156;76157;76158;76159;76160;76161;76162 91957;91958;91959;91960;91961;91962;91963;91964;91965;91966;91967;91968;91969;91970;91971;91972;91973 91957 17 NLMDFDPQTDQPDQLFALLESAANK Oxidation (M) 2836.3225 0.32253929 2950 Q9NU22 MDN1 Midasin yes yes 0 0 1 0 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 81.924 81.941 3 1.5625E-08 26907 20211116_3445_TMUAki_TMT10x_S_F6 99.135 92.678 745300 1292300 16851 1174100 884300 1343400 980680 1015800 998710 1044900 1070400 694070 1205400 79442 1208700 851360 1350800 990270 1050200 1017800 1019300 1030300 2 2 2 2 2 2 2 2 2 2 2 424930 708470 10915 660450 447910 927300 508390 595010 565560 606790 627970 395730 660900 45724 681150 431660 920740 514290 622090 575080 592140 603840 1 1 1 1 1 1 1 1 1 1 1 320370 583790 5936.1 513650 436400 416150 472290 420750 433140 438130 442420 298340 544480 33718 527500 419700 430060 475980 428080 442690 427190 426500 1 1 1 1 1 1 1 1 1 1 1 177580000 62053000 115530000 14534 2950 13313 76163;76164;76165 91974;91975 91975 3042 2 NLNEDDTFLVFSK Unmodified 1540.7409 0.74093835 2732 Q9BYT8 NLN Neurolysin, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3.86 0.639 2 4 1 3 4 75.613 75.562 2;3 6.3136E-20 24805 20211116_3431_TMUAki_TMT10x_P_F4 198.14 152.98 15154000 26194000 127520 23446000 18522000 20884000 18194000 15491000 14658000 16019000 20329000 14111000 24432000 1367300 24074000 17756000 21312000 18362000 16039000 15268000 15623000 19435000 8 8 6 8 8 8 8 8 8 8 8 5632100 9521100 66640 8325300 5880200 10368000 6561500 5456700 5671100 5972100 7074300 5244600 8879800 532520 8608200 5659400 10326000 6592400 5811300 5858100 5811500 6780900 3 3 3 3 3 3 3 3 3 3 3 9522100 16673000 60876 15120000 12642000 10516000 11632000 10035000 8987300 10046000 13255000 8866100 15552000 834790 15466000 12096000 10987000 11770000 10227000 9410200 9811400 12654000 5 5 3 5 5 5 5 5 5 5 5 2368900000 815600000 1553300000 14535 2732 13314 76166;76167;76168;76169;76170;76171;76172 91976;91977;91978;91979;91980;91981;91982;91983 91977 8 NLNGTLHELLR Unmodified 1278.7044 0.70443369 1229 P54886;P54886-2 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 52.044 52.476 3 1.9832E-19 16845 20211116_3446_TMUAki_TMT10x_S_F7 232.39 118.89 4203600 6771100 53264 7475000 6248800 7376600 4733600 6099700 6067500 5549500 5985800 3914400 6320800 426790 7574600 5956800 7492100 4922000 6249700 6111300 5442600 5776800 3 3 3 3 3 3 3 3 3 3 3 2455100 3822200 41902 4419700 4531100 5724700 3191600 3455400 3595000 3237400 3424800 2286200 3568700 271670 4486100 4313500 5700500 3319900 3621200 3633600 3170800 3309000 2 2 2 2 2 2 2 2 2 2 2 1748500 2948900 11362 3055400 1717700 1651800 1542000 2644300 2472400 2312100 2561000 1628100 2752000 155120 3088500 1643300 1791600 1602100 2628500 2477700 2271800 2467700 1 1 1 1 1 1 1 1 1 1 1 1412600000 884180000 528370000 14536 1229 13315 76173;76174;76175 91984;91985;91986 91986 3 NLNPEDIDQLITISGMVIR Unmodified 2140.1198 0.11980414 911 P33991 MCM4 DNA replication licensing factor MCM4 yes yes 0 0 0 0 By MS/MS By MS/MS 6.38 1.32 1 1 2 2 2 4 4 81.457 81.465 3 1.368E-17 28864 20211116_3446_TMUAki_TMT10x_S_F7 144.01 128.24 6153300 9838200 92385 10195000 7208700 8977500 7580700 5761400 5606600 6267100 7616700 5729900 9181400 592130 10357000 6925700 9148500 7608900 6035300 5861400 6099900 7285300 8 8 5 8 8 8 8 8 8 8 8 2761000 4749800 60746 4800900 2927300 5152900 3336200 2797600 2677300 3005600 3536700 2571200 4432200 287850 4899300 2820800 5174800 3342300 2969500 2783100 2926800 3385100 4 4 4 4 4 4 4 4 4 4 4 3392300 5088400 31639 5393700 4281300 3824600 4244500 2963900 2929200 3261500 4080000 3158700 4749200 304290 5457500 4104900 3973700 4266600 3065800 3078400 3173100 3900200 4 4 1 4 4 4 4 4 4 4 4 2131600000 1085800000 1045700000 14537 911 13316 76176;76177;76178;76179;76180;76181;76182;76183 91987;91988;91989;91990;91991;91992;91993;91994 91993 8 NLNPEDIDQLITISGMVIR Oxidation (M) 2156.1147 0.11471877 911 P33991 MCM4 DNA replication licensing factor MCM4 yes yes 0 0 1 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 80.242 80.258 3 3.1732E-10 28355 20211116_3446_TMUAki_TMT10x_S_F7 121.34 109.9 13154000 24506000 1468900 21926000 18309000 13272000 12166000 13880000 13359000 8739500 13268000 12259000 22857000 2529700 22421000 17490000 14068000 12699000 13928000 13535000 8747300 12802000 4 4 3 4 4 4 4 4 4 4 4 2899900 4618700 165860 4502500 2763800 5178600 3363700 2910800 2918600 2964200 3719000 2701400 4309300 393100 4611600 2675200 5183000 3366800 3075500 3017000 2892800 3562800 2 2 2 2 2 2 2 2 2 2 2 10254000 19887000 1303100 17424000 15545000 8093100 8802700 10969000 10440000 5775300 9549200 9557600 18547000 2136600 17809000 14814000 8884900 9332200 10852000 10518000 5854400 9239400 2 2 1 2 2 2 2 2 2 2 2 3180600000 1356600000 1824000000 14538 911 13316 76184;76185;76186;76187 91995;91996;91997 91997 1125 3 NLNPVFGGSGPALTGLR Unmodified 1668.8948 0.89475365 987 P40818;P40818-2 USP8 Ubiquitin carboxyl-terminal hydrolase 8 yes no 0 0 0 0 By MS/MS 3 0 1 1 66.922 66.46 3 0.0004204 23908 20211116_3441_TMUAki_TMT10x_S_F3 64.346 45.601 1669700 3031100 37068 2863700 1994900 1814600 1779000 1816600 1661000 1861200 2366100 1555000 2827700 177530 2917600 1909600 1913400 1812100 1848300 1719900 1815900 2260600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1669700 3031100 37068 2863700 1994900 1814600 1779000 1816600 1661000 1861200 2366100 1555000 2827700 177530 2917600 1909600 1913400 1812100 1848300 1719900 1815900 2260600 1 1 1 1 1 1 1 1 1 1 1 173450000 0 173450000 14539 987 13317 76188 91998 91998 1 NLNSLFNNMEELIK Oxidation (M) 1693.8345 0.83452116 1184 P52732 KIF11 Kinesin-like protein KIF11 yes yes 0 0 1 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 72.768 72.816 3 0.00019931 23224 20211116_3445_TMUAki_TMT10x_S_F6 77.192 56.811 2722100 4035900 0 4221200 2997200 5352000 2976500 3191500 2992500 3380200 3516200 2534500 3766600 225870 4310200 2873100 5334000 3020800 3359600 3062200 3293500 3375700 1 1 0 1 1 1 1 1 1 1 1 2722100 4035900 0 4221200 2997200 5352000 2976500 3191500 2992500 3380200 3516200 2534500 3766600 225870 4310200 2873100 5334000 3020800 3359600 3062200 3293500 3375700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 282110000 282110000 0 14540 1184 13318 76189;76190 91999;92000 92000 1595 2 NLNYLHLDYNFNLKPVK Unmodified 2104.1106 0.11056009 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 1 By MS/MS 3 0 1 1 68.488 68.204 4 4.1332E-08 23502 20211116_3430_TMUAki_TMT10x_P_F3 118.33 103.24 7654200 16182000 233140 13781000 11882000 19910000 12505000 10184000 9433200 9887300 9792300 7128600 15090000 911080 14320000 11423000 19686000 12556000 10836000 9743800 9668700 9435200 2 2 2 2 2 2 2 2 2 2 2 7654200 16182000 233140 13781000 11882000 19910000 12505000 10184000 9433200 9887300 9792300 7128600 15090000 911080 14320000 11423000 19686000 12556000 10836000 9743800 9668700 9435200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 802220000 802220000 0 14541 1997 13319 76191 92001;92002 92001 2 NLPEEYELK Unmodified 1133.5605 0.56045479 1183 P52701;P52701-3;P52701-4;P52701-2 MSH6 DNA mismatch repair protein Msh6 yes no 0 0 0 0 By MS/MS 4 0 1 1 51.838 51.917 2 0.00019586 15607 20211116_3442_TMUAki_TMT10x_S_F4 98.943 58.511 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14542 1183 13320 76192 92003 92003 1 NLPFDFTWK Unmodified 1166.576 0.57604528 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS By MS/MS 3.28 1.95 3 7 13 2 1 3 13 16 55.909 55.888 2;3 8.6012E-11 27531 20211116_3439_TMUAki_TMT10x_S_F1 228.05 170.87 187710000 300760000 1122900 298300000 194780000 212100000 265220000 73564000 53025000 97815000 207950000 174770000 280630000 14984000 303200000 188490000 218280000 258770000 82512000 68727000 94532000 195800000 17 17 12 17 17 17 17 17 17 17 17 109610000 171860000 477080 171090000 127080000 149820000 156510000 40832000 32286000 55511000 114570000 102050000 160360000 8133700 174280000 122510000 151490000 153370000 47455000 41201000 53610000 107970000 7 7 4 7 7 7 7 7 7 7 7 78093000 128900000 645830 127210000 67699000 62280000 108710000 32733000 20739000 42304000 93376000 72717000 120270000 6849900 128920000 65978000 66788000 105400000 35058000 27525000 40922000 87828000 10 10 8 10 10 10 10 10 10 10 10 18640000000 10640000000 8000500000 14543 1171 13321 76193;76194;76195;76196;76197;76198;76199;76200;76201;76202;76203;76204;76205;76206;76207;76208;76209;76210;76211;76212;76213;76214;76215;76216;76217;76218;76219;76220;76221 92004;92005;92006;92007;92008;92009;92010;92011;92012;92013;92014;92015;92016;92017;92018;92019;92020;92021;92022;92023;92024;92025;92026;92027;92028;92029;92030;92031 92017 28 NLPGLVQEGEPFSEEATLFTK Unmodified 2305.1478 0.14779303 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.29 1.1 1 2 5 4 2 7 7 78.959 78.943 2;3;4 1.6911E-26 26655 20211116_3442_TMUAki_TMT10x_S_F4 168.99 158.05 50296000 83426000 508880 74656000 53244000 79587000 60580000 45149000 44941000 48375000 63774000 46833000 77813000 4151100 76855000 51255000 80000000 60582000 47739000 47073000 47112000 60937000 15 15 7 15 15 15 15 15 15 15 15 37198000 60149000 421190 54943000 34645000 63545000 42078000 33008000 33159000 36257000 47510000 34637000 56106000 2931200 56547000 33421000 63519000 42017000 35199000 34633000 35277000 45387000 11 11 5 11 11 11 11 11 11 11 11 13098000 23278000 87689 19713000 18599000 16042000 18502000 12142000 11783000 12117000 16264000 12196000 21707000 1220000 20308000 17835000 16481000 18565000 12541000 12440000 11835000 15551000 4 4 2 4 4 4 4 4 4 4 4 16734000000 9076500000 7657600000 14544 2048 13322 76222;76223;76224;76225;76226;76227;76228;76229;76230;76231;76232;76233;76234;76235 92032;92033;92034;92035;92036;92037;92038;92039;92040;92041;92042;92043;92044;92045;92046;92047 92044 16 NLPIYSEEIVEMYK Oxidation (M) 1742.8437 0.84368886 934 P35579 MYH9 Myosin-9 yes yes 0 0 1 0 By MS/MS By MS/MS 4.33 1.49 1 1 1 1 2 2 4 75.28 75.2 3 2.6181E-09 25149 20211116_3442_TMUAki_TMT10x_S_F4 125.53 109.9 19560000 36861000 124910 32134000 26618000 29645000 26932000 23649000 22594000 24952000 27865000 18212000 34378000 1375100 33078000 25530000 30219000 27168000 24386000 23363000 24316000 26718000 8 8 4 8 8 8 8 8 8 8 8 5574900 9436800 18243 8366500 6040300 11960000 7645100 6848200 6309000 6790300 7295700 5190700 8801500 459480 8664600 5831500 11847000 7629400 7219000 6511800 6634100 7007300 2 2 1 2 2 2 2 2 2 2 2 13985000 27424000 106670 23767000 20578000 17685000 19287000 16801000 16285000 18162000 20570000 13021000 25576000 915650 24414000 19698000 18372000 19538000 17167000 16851000 17682000 19710000 6 6 3 6 6 6 6 6 6 6 6 3620000000 1265000000 2355000000 14545 934 13323 76236;76237;76238;76239;76240;76241 92048;92049;92050;92051;92052;92053;92054;92055 92052 1180 8 NLPIYSENIIEMYR Oxidation (M) 1769.8658 0.86582129 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 1 0 By MS/MS By MS/MS 5.6 0.49 2 3 2 3 70.455 70.401 2;3 7.3266E-06 21856 20211116_3434_TMUAki_TMT10x_P_F6 89.317 71.498 13471000 22957000 128400 21284000 16052000 13413000 14925000 15317000 13316000 15580000 16492000 12543000 21415000 1207500 21713000 15366000 14193000 15148000 15485000 13730000 15205000 15811000 6 6 4 6 6 6 6 6 6 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13471000 22957000 128400 21284000 16052000 13413000 14925000 15317000 13316000 15580000 16492000 12543000 21415000 1207500 21713000 15366000 14193000 15148000 15485000 13730000 15205000 15811000 6 6 4 6 6 6 6 6 6 6 6 1577200000 0 1577200000 14546 935 13324 76242;76243;76244;76245;76246 92056;92057;92058;92059;92060;92061;92062;92063 92057 1194 8 NLPLPPPPPPR Unmodified 1193.6921 0.69207809 1329;1330 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 0 By MS/MS By MS/MS 4.3 3.13 8 2 6 4 10 10 49.232 49.334 2;3 5.0016E-15 15467 20211116_3439_TMUAki_TMT10x_S_F1 197.3 89.405 76877000 128700000 1026200 144190000 111690000 119780000 85060000 115930000 113440000 102460000 119100000 71583000 120150000 6109700 145630000 106450000 123440000 88551000 117660000 114370000 100620000 114710000 37 37 17 37 37 37 37 37 37 37 37 32931000 52536000 582780 60524000 67826000 79533000 48914000 50558000 51279000 46340000 49800000 30666000 49052000 2963400 61465000 64591000 79199000 50677000 52740000 52012000 45432000 48086000 15 15 8 15 15 15 15 15 15 15 15 43945000 76166000 443460 83661000 43864000 40248000 36146000 65376000 62163000 56119000 69298000 40917000 71099000 3146300 84170000 41862000 44245000 37873000 64925000 62355000 55190000 66628000 22 22 9 22 22 22 22 22 22 22 22 10888000000 6257600000 4630900000 14547 1329;1330 13325 76247;76248;76249;76250;76251;76252;76253;76254;76255;76256;76257;76258;76259;76260;76261;76262;76263;76264;76265;76266 92064;92065;92066;92067;92068;92069;92070;92071;92072;92073;92074;92075;92076;92077;92078;92079;92080;92081;92082;92083;92084;92085;92086;92087;92088;92089;92090;92091;92092;92093;92094;92095;92096;92097;92098;92099;92100;92101;92102;92103;92104;92105;92106 92085 43 NLPNPTLVTIAR Unmodified 1307.7561 0.75613491 1892 Q49AR2;Q49AR2-2;Q49AR2-3 C5orf22 UPF0489 protein C5orf22 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 57.401 57.25 2 6.6795E-06 16962 20211116_3428_TMUAki_TMT10x_P_F1 105.2 76.985 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14548 1892 13326 76267;76268 92107;92108 92107 2 NLPPEEQMISALPDIK Unmodified 1793.9233 0.92333617 183 O15355 PPM1G Protein phosphatase 1G yes yes 0 0 0 0 By MS/MS By matching 5 0 2 1 1 76.449 76.467 3 0.0065823 25491 20211116_3433_TMUAki_TMT10x_P_F5 55.33 40.644 4072300 6170700 111920 5707500 3454600 6966500 4595400 2939300 3051800 3199200 4753400 3792500 5756200 433270 5874100 3347900 6928800 4553900 3199500 3232600 3113800 4532700 1 1 1 1 1 1 1 1 1 1 1 4072300 6170700 111920 5707500 3454600 6966500 4595400 2939300 3051800 3199200 4753400 3792500 5756200 433270 5874100 3347900 6928800 4553900 3199500 3232600 3113800 4532700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 687160000 439660000 247490000 14549 183 13327 76269;76270 92109 92109 1 NLPPSGAVPVTGIPPHVVK Unmodified 1878.0727 0.072718018 1616 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 1.94 1.59 7 9 1 11 6 54.507 54.376 3;4 1.5466E-17 18086 20211116_3439_TMUAki_TMT10x_S_F1 141.86 120.23 55001000 90743000 400450 92824000 66111000 79404000 58054000 75122000 73337000 67978000 75786000 51211000 84680000 4257100 94348000 63184000 81623000 59781000 76382000 74026000 66685000 73032000 29 29 13 29 29 29 29 29 29 29 29 20640000 32362000 232880 34495000 30271000 46452000 27563000 28065000 27242000 24565000 27794000 19218000 30205000 1936000 35219000 28963000 46171000 28090000 29358000 27748000 24136000 26795000 11 11 8 11 11 11 11 11 11 11 11 34361000 58381000 167560 58329000 35840000 32952000 30491000 47057000 46095000 43412000 47992000 31993000 54476000 2321100 59129000 34221000 35452000 31691000 47024000 46279000 42549000 46237000 18 18 5 18 18 18 18 18 18 18 18 6390000000 3677200000 2712800000 14550 1616 13328 76271;76272;76273;76274;76275;76276;76277;76278;76279;76280;76281;76282;76283;76284;76285;76286;76287 92110;92111;92112;92113;92114;92115;92116;92117;92118;92119;92120;92121;92122;92123;92124;92125;92126;92127;92128;92129;92130;92131;92132;92133;92134;92135;92136;92137;92138;92139;92140;92141;92142;92143 92131 34 NLPVPVYLRPLDEK Unmodified 1651.9297 0.92974218 261 O60271;O60271-2;O60271-9;O60271-4;O60271-5;O60271-3 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 65.26 65.311 3 0.00077078 19855 20211116_3447_TMUAki_TMT10x_S_F8 77.222 53.38 21772000 36155000 290900 37497000 25025000 28171000 24862000 19531000 18444000 20783000 26490000 20274000 33742000 2121700 38019000 24008000 29080000 25028000 20331000 19330000 20246000 25305000 3 3 3 3 3 3 3 3 3 3 3 7174400 12131000 116240 11916000 8766800 13730000 8894600 6807700 6237000 7042300 8591000 6681000 11319000 725450 12199000 8416300 13720000 8933300 7278000 6544900 6868200 8214500 1 1 1 1 1 1 1 1 1 1 1 14598000 24024000 174660 25580000 16258000 14441000 15967000 12723000 12207000 13741000 17899000 13593000 22423000 1396300 25820000 15592000 15360000 16095000 13053000 12785000 13378000 17091000 2 2 2 2 2 2 2 2 2 2 2 1377900000 712330000 665610000 14551 261 13329 76288;76289 92144;92145;92146 92146 3 NLPYKVTQDELKEVFEDAAEIR Unmodified 2606.3228 0.32279729 729 P19338 NCL Nucleolin yes yes 0 0 0 2 By MS/MS By matching 6 0.816 1 1 1 2 1 78.053 78.073 4 4.2226E-10 24963 20211116_3434_TMUAki_TMT10x_P_F6 105.79 87.997 5509100 10518000 0 5674200 7887700 18176000 9580200 17042000 13971000 12027000 11580000 5128900 9796100 419030 6317700 7601000 17720000 9765100 17235000 13936000 11952000 11244000 2 2 0 2 2 2 2 2 2 2 2 5509100 10518000 0 5674200 7887700 18176000 9580200 17042000 13971000 12027000 11580000 5128900 9796100 419030 6317700 7601000 17720000 9765100 17235000 13936000 11952000 11244000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2934700000 1902200000 1032400000 14552 729 13330 76290;76291;76292 92147;92148 92148 2 NLPYVYIPSK Unmodified 1192.6492 0.64921022 2997 Q9NX24 NHP2 H/ACA ribonucleoprotein complex subunit 2 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 5 2 3 65.65 65.366 2;3 8.9238E-05 20626 20211116_3440_TMUAki_TMT10x_S_F2 98.048 70.719 8122100 13757000 6281.9 13416000 10834000 14860000 9800800 9466000 9809700 9900000 10626000 7561800 12836000 618410 13733000 10356000 14928000 9995700 9909600 10008000 9651000 10226000 4 4 2 4 4 4 4 4 4 4 4 6652000 11023000 405.84 10683000 9481600 13491000 8344800 7776700 7996500 8242100 8576300 6192800 10284000 492700 10964000 9056400 13442000 8513200 8209100 8170900 8030400 8255300 3 3 1 3 3 3 3 3 3 3 3 1470200 2734900 5876.1 2733500 1352300 1369100 1456000 1689300 1813200 1657900 2050000 1368900 2551900 125710 2768300 1299600 1486100 1482500 1700500 1837400 1620500 1970200 1 1 1 1 1 1 1 1 1 1 1 999980000 729330000 270650000 14553 2997 13331 76293;76294;76295;76296;76297 92149;92150;92151;92152;92153;92154 92153 6 NLPYVYIPSKTDLGAAAGSK Unmodified 2064.0892 0.089155943 2997 Q9NX24 NHP2 H/ACA ribonucleoprotein complex subunit 2 yes yes 0 0 0 1 By MS/MS 2 0 1 1 67.655 67.439 3 0.0041304 21428 20211116_3440_TMUAki_TMT10x_S_F2 58.712 48.119 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14554 2997 13332 76298 92155 92155 1 NLQDAMQVCR Oxidation (M) 1249.5543 0.55434033 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 1 0 By MS/MS By MS/MS 5.12 1.05 1 1 2 4 4 4 32.46 32.483 2;3 0.00070351 9958 20211116_3441_TMUAki_TMT10x_S_F3 107.21 89.22 1367900 2105500 13835 2654500 3372100 2272300 1634300 1265100 1307300 1111100 1921000 1273700 1966700 134640 2663500 3189500 2315800 1738500 1332500 1366000 1091500 1834100 9 9 3 9 9 9 9 9 9 9 9 933510 1431100 13709 1794100 3000000 2008800 1260800 910920 927520 789670 1333000 869230 1336800 112070 1807900 2833200 2008500 1359500 977930 972570 776230 1273400 4 4 2 4 4 4 4 4 4 4 4 434420 674400 126.12 860340 372020 263520 373460 354200 379730 321430 587990 404440 629980 22575 855630 356310 307310 378940 354570 393430 315280 560760 5 5 1 5 5 5 5 5 5 5 5 283610000 218570000 65038000 14555 1094 13333 76299;76300;76301;76302;76303;76304;76305;76306 92156;92157;92158;92159;92160;92161;92162 92160 1452 7 NLQDAMQVCR Unmodified 1233.5594 0.55942571 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 42.073 42.219 2 5.6809E-10 10431 20211116_3444_TMUAki_TMT10x_S_F5 195.04 152.17 3191400 4870000 11591 7360900 2380200 1591400 2301500 2696200 2588400 2309200 4376400 2971400 4553500 244740 7247100 2279700 2001900 2347500 2674000 2684100 2271200 4166400 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3191400 4870000 11591 7360900 2380200 1591400 2301500 2696200 2588400 2309200 4376400 2971400 4553500 244740 7247100 2279700 2001900 2347500 2674000 2684100 2271200 4166400 3 3 1 3 3 3 3 3 3 3 3 342500000 84753000 257750000 14556 1094 13333 76307;76308;76309;76310;76311 92163;92164;92165;92166 92165 4 NLQDGQISDTGDLGEDIASN Unmodified 2060.9134 0.913436 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4;Q7Z4S6-6 KIF21A Kinesin-like protein KIF21A yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 64.441 64.315 3 0.004097 19915 20211116_3428_TMUAki_TMT10x_P_F1 56.149 50.508 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14557 2082 13334 76312;76313 92167;92168 92167 2 NLQEAEEWYK Unmodified 1308.5986 0.59863121 561;995 P08670;P41219;P41219-2 VIM;PRPH Vimentin;Peripherin no no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 2 4 4 2 58.34 58.19 2;3 2.4464E-14 19420 20211116_3430_TMUAki_TMT10x_P_F3 232.41 134.61 20042000 34300000 98411 40846000 28246000 21840000 22830000 12380000 11826000 13950000 25978000 18661000 32030000 1813400 40923000 26950000 23209000 23100000 13112000 13015000 13559000 24622000 5 5 2 5 5 5 5 5 5 5 5 7138800 11885000 13441 14130000 17156000 14435000 13606000 4713700 4352000 5327100 8948900 6646900 11098000 738780 14261000 16361000 14469000 13700000 5301600 4995500 5177500 8490300 2 2 1 2 2 2 2 2 2 2 2 12903000 22415000 84969 26716000 11089000 7404900 9223800 7666300 7474200 8622400 17029000 12014000 20932000 1074600 26662000 10588000 8740700 9399500 7810000 8019300 8381700 16131000 3 3 1 3 3 3 3 3 3 3 3 1335200000 846260000 488980000 14558 561;995 13335 76314;76315;76316;76317;76318;76319 92169;92170;92171;92172;92173;92174;92175 92169 7 NLQEEIDALESR Unmodified 1415.6892 0.68923713 2906 Q9NQP4 PFDN4 Prefoldin subunit 4 yes yes 0 0 0 0 By MS/MS By MS/MS 1.91 0.793 4 4 3 5 6 66.998 66.749 2;3 2.6401E-38 20796 20211116_3428_TMUAki_TMT10x_P_F1 277.28 210.2 99467000 169720000 752620 140380000 133290000 167530000 123930000 136650000 111750000 123310000 137720000 92616000 158260000 8974000 145690000 127580000 168300000 125820000 140100000 115140000 120980000 132050000 16 16 9 16 16 16 16 16 16 16 16 50577000 84562000 664440 70671000 58513000 113570000 65311000 73300000 59980000 63436000 71461000 47096000 78854000 4759900 73719000 56305000 112150000 65727000 76263000 61660000 62362000 68581000 9 9 5 9 9 9 9 9 9 9 9 48891000 85161000 88179 69708000 74775000 53961000 58619000 63350000 51767000 59871000 66260000 45520000 79407000 4214100 71970000 71278000 56154000 60092000 63832000 53478000 58616000 63470000 7 7 4 7 7 7 7 7 7 7 7 13907000000 8154100000 5753100000 14559 2906 13336 76320;76321;76322;76323;76324;76325;76326;76327;76328;76329;76330 92176;92177;92178;92179;92180;92181;92182;92183;92184;92185;92186;92187;92188;92189;92190;92191;92192 92177 17 NLQEILHGAVR Unmodified 1248.6939 0.693869 472 P00533;P00533-2;P00533-4;P00533-3 EGFR Epidermal growth factor receptor yes no 0 0 0 0 By MS/MS 7 0 1 1 50.283 50.933 3 0.0007807 15687 20211116_3435_TMUAki_TMT10x_P_F7 79.697 59.91 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14560 472 13337 76331 92193 92193 1 NLQEIQQAGER Unmodified 1284.6422 0.64222736 2184 Q8N1F7 NUP93 Nuclear pore complex protein Nup93 yes yes 0 0 0 0 By MS/MS 2 0 1 1 36.19 36.289 2 0.0032411 8667 20211116_3440_TMUAki_TMT10x_S_F2 76.068 31.429 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14561 2184 13338 76332 92194 92194 1 NLQEQTVQLQSELSR Unmodified 1771.9064 0.90644055 641 P12270 TPR Nucleoprotein TPR yes yes 0 0 0 0 By MS/MS 4 0 2 2 55.958 55.941 2;3 3.8493E-62 17281 20211116_3442_TMUAki_TMT10x_S_F4 315.41 274.01 910030 1634800 7704.2 1635600 882440 829770 743180 1286000 1200900 1156800 1216500 847390 1525400 82242 1656500 843090 905270 775290 1280600 1202300 1135200 1173100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 910030 1634800 7704.2 1635600 882440 829770 743180 1286000 1200900 1156800 1216500 847390 1525400 82242 1656500 843090 905270 775290 1280600 1202300 1135200 1173100 1 1 1 1 1 1 1 1 1 1 1 394870000 0 394870000 14562 641 13339 76333;76334 92195;92196 92195 2 NLQEVLGEEK Unmodified 1157.5928 0.59281755 1219 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS 4 0 1 1 55.548 55.531 2 4.9264E-07 17100 20211116_3442_TMUAki_TMT10x_S_F4 110.08 60.362 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14563 1219 13340 76335 92197 92197 1 NLQLFMENKQPEDDLFDRLNTGILNK Unmodified 3104.5601 0.56008422 624 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 0 2 By MS/MS By matching 7.5 0.5 1 1 1 1 78.089 78.095 4 3.4763E-08 27074 20211116_3435_TMUAki_TMT10x_P_F7 90.468 80.046 3604300 6246100 59499 6210200 4401600 5697400 4538700 2550600 2210300 2623600 4912600 3356400 5828100 365440 6330300 4227600 5765100 4524500 2754200 2446400 2559300 4655300 1 1 1 1 1 1 1 1 1 1 1 3604300 6246100 59499 6210200 4401600 5697400 4538700 2550600 2210300 2623600 4912600 3356400 5828100 365440 6330300 4227600 5765100 4524500 2754200 2446400 2559300 4655300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2213700000 1030500000 1183100000 14564 624 13341 76336;76337 92198 92198 1 NLQLFMENKQPEDDLFDRLNTGILNK Oxidation (M) 3120.555 0.55499884 624 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 1 2 By MS/MS By MS/MS 8 0 2 1 1 77.277 77.255 4 3.7396E-09 24690 20211116_3447_TMUAki_TMT10x_S_F8 100.08 90.75 21186000 37452000 64835 29557000 27515000 36441000 30485000 31203000 30600000 31302000 32157000 19725000 34917000 1708700 30814000 26449000 36582000 30771000 31992000 31181000 30567000 30973000 3 3 1 3 3 3 3 3 3 3 3 9012500 15000000 0 12170000 8867600 18698000 12318000 13429000 12978000 13649000 13955000 8390100 13986000 565540 12713000 8577700 18527000 12335000 13926000 13208000 13321000 13432000 1 1 0 1 1 1 1 1 1 1 1 12173000 22452000 64835 17387000 18647000 17743000 18167000 17773000 17623000 17653000 18202000 11335000 20931000 1143200 18101000 17871000 18054000 18436000 18066000 17972000 17246000 17541000 2 2 1 2 2 2 2 2 2 2 2 5371600000 3364400000 2007200000 14565 624 13341 76338;76339 92199;92200;92201 92201 640 3 NLQNLLILTAIK Unmodified 1352.8391 0.83913625 1471 Q00610;Q00610-2;P53675;P53675-2 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 0 By MS/MS 5 0 1 1 79.796 79.807 2 6.9853E-18 25730 20211116_3444_TMUAki_TMT10x_S_F5 187.97 159.96 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14566 1471 13342 76340 92202 92202 1 NLQTVNVDEN Unmodified 1144.536 0.53603095 1380 P62899 RPL31 60S ribosomal protein L31 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 43.212 43.074 2 0.000606 13079 20211116_3430_TMUAki_TMT10x_P_F3 102.61 89.555 14980000 21740000 294680 25070000 19574000 19413000 14834000 17735000 20972000 15269000 19869000 13950000 20298000 1549400 25256000 18665000 20088000 15485000 18043000 21027000 15014000 19201000 5 5 2 5 5 5 5 5 5 5 5 6653300 9007100 294680 10744000 14921000 13609000 8851600 7277900 7989500 6781300 9254800 6197000 8411100 942030 10880000 14173000 13545000 9269200 7704300 8210600 6643400 8888600 2 2 2 2 2 2 2 2 2 2 2 8326800 12732000 0 14326000 4652800 5804800 5982600 10457000 12982000 8487800 10615000 7752800 11887000 607350 14375000 4492700 6543700 6215600 10338000 12817000 8370800 10313000 3 3 0 3 3 3 3 3 3 3 3 227310000 135820000 91496000 14567 1380 13343 76341;76342;76343;76344 92203;92204;92205 92203 3 NLQYYDISAK Unmodified 1213.5979 0.59790293 1368 P62826 RAN GTP-binding nuclear protein Ran yes yes 0 0 0 0 By MS/MS By MS/MS 5.75 1.2 3 4 4 4 1 8 8 52.902 53.173 2;3 2.4904E-43 15078 20211116_3445_TMUAki_TMT10x_S_F6 296.52 209.34 95947000 142900000 537000 211270000 220710000 169840000 99052000 166940000 184000000 119000000 170260000 89332000 133600000 9133600 210080000 208530000 175510000 109460000 168450000 182990000 118200000 164670000 17 17 7 17 17 17 17 17 17 17 17 46065000 67449000 520510 97899000 183280000 137770000 66391000 80276000 88943000 57524000 79246000 42891000 63051000 5762600 98319000 172800000 136600000 74153000 83840000 89153000 57119000 76746000 9 9 6 9 9 9 9 9 9 9 9 49882000 75450000 16486 113370000 37424000 32065000 32661000 86669000 95061000 61479000 91012000 46441000 70544000 3371000 111760000 35726000 38908000 35310000 84609000 93833000 61082000 87921000 8 8 1 8 8 8 8 8 8 8 8 21156000000 11748000000 9408300000 14568 1368 13344 76345;76346;76347;76348;76349;76350;76351;76352;76353;76354;76355;76356;76357;76358;76359;76360 92206;92207;92208;92209;92210;92211;92212;92213;92214;92215;92216;92217;92218;92219;92220;92221;92222;92223;92224 92220 19 NLRDIDEVSSLLR Unmodified 1528.8209 0.82092001 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 1 By MS/MS By MS/MS 5.27 1.29 2 2 4 4 3 7 8 62.812 62.788 2;3 1.1172E-42 19065 20211116_3445_TMUAki_TMT10x_S_F6 293.71 232.03 86776000 146520000 356810 141620000 112910000 136200000 101990000 103860000 95637000 101180000 113740000 80794000 136700000 6453000 144750000 107970000 138360000 103830000 107150000 98215000 98925000 109160000 20 20 8 20 20 20 20 20 20 20 20 48511000 80109000 318340 77375000 60572000 96289000 60213000 55331000 52295000 55898000 61578000 45170000 74740000 3542800 79411000 58082000 96006000 60850000 58341000 53877000 54570000 59115000 12 12 6 12 12 12 12 12 12 12 12 38265000 66408000 38471 64250000 52333000 39914000 41780000 48525000 43343000 45279000 52160000 35624000 61958000 2910200 65334000 49884000 42357000 42979000 48805000 44338000 44355000 50044000 8 8 2 8 8 8 8 8 8 8 8 25879000000 12760000000 13118000000 14569 1146 13345 76361;76362;76363;76364;76365;76366;76367;76368;76369;76370;76371;76372;76373;76374;76375 92225;92226;92227;92228;92229;92230;92231;92232;92233;92234;92235;92236;92237;92238;92239;92240;92241;92242;92243;92244;92245;92246;92247 92245 23 NLREDGEK Unmodified 959.46722 0.46722311 563;1394 P08754;P04899;P04899-4;P63096 GNAI3;GNAI2;GNAI1 Guanine nucleotide-binding protein G(k) subunit alpha;Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(i) subunit alpha-1 no no 0 0 0 1 By MS/MS 3 0 1 1 28.211 27.928 3 0.082453 8272 20211116_3441_TMUAki_TMT10x_S_F3 40.331 21.551 513470 757370 0 491290 497730 628160 503660 312630 369790 316080 529470 478070 705710 39215 522030 477190 624400 506430 333890 387730 308560 505820 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 513470 757370 0 491290 497730 628160 503660 312630 369790 316080 529470 478070 705710 39215 522030 477190 624400 506430 333890 387730 308560 505820 1 1 0 1 1 1 1 1 1 1 1 3800600 0 3800600 14570 563;1394 13346 76376 92248 92248 1 NLRPGDSQTAAQAR Unmodified 1483.7492 0.74915205 2333 Q8WZA9 IRGQ Immunity-related GTPase family Q protein yes yes 0 0 0 1 By MS/MS 5 0 1 1 26.61 26.536 3 3.5963E-06 5278 20211116_3433_TMUAki_TMT10x_P_F5 106.42 77.121 34238 72137 0 65214 95325 66557 50639 32418 45546 32306 54049 31866 67286 2131.2 67038 90177 66954 53544 34680 46860 31557 51876 1 1 0 1 1 1 1 1 1 1 1 34238 72137 0 65214 95325 66557 50639 32418 45546 32306 54049 31866 67286 2131.2 67038 90177 66954 53544 34680 46860 31557 51876 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3542300 3542300 0 14571 2333 13347 76377 92249 92249 1 NLSDIDLMAPQPGV Oxidation (M) 1484.7181 0.71809442 2416 Q96B49 TOMM6 Mitochondrial import receptor subunit TOM6 homolog yes yes 0 0 1 0 By MS/MS By MS/MS 3.14 0.639 1 4 2 4 3 72.472 72.279 2;3 6.5933E-09 26170 20211116_3441_TMUAki_TMT10x_S_F3 131.09 113.65 35076000 55111000 0 58854000 34927000 51709000 37593000 31424000 33566000 35798000 39952000 32655000 51439000 2414700 59669000 33524000 52663000 37868000 33105000 34550000 34782000 38342000 7 7 0 7 7 7 7 7 7 7 7 22086000 34293000 0 36034000 23673000 39814000 25207000 19855000 21706000 22679000 25208000 20562000 32005000 1583900 36694000 22720000 39878000 25380000 21279000 22360000 22033000 24209000 4 4 0 4 4 4 4 4 4 4 4 12990000 20818000 0 22820000 11253000 11896000 12386000 11570000 11860000 13119000 14744000 12093000 19433000 830800 22975000 10804000 12785000 12488000 11826000 12191000 12749000 14133000 3 3 0 3 3 3 3 3 3 3 3 2653000000 1550100000 1102900000 14572 2416 13348 76378;76379;76380;76381;76382;76383;76384 92250;92251;92252;92253;92254;92255;92256 92254 2744 7 NLSEEGLLR Unmodified 1029.5455 0.54547343 1564 Q12789;Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 yes no 0 0 0 0 By matching By MS/MS 3 0 2 1 1 45.162 45 2 0.0067603 15154 20211116_3441_TMUAki_TMT10x_S_F3 75.571 37.597 868780 1458700 14873 1705200 842740 820150 820810 1239600 1284200 1103200 1387000 809030 1362000 85524 1708900 808410 899530 848070 1235100 1289800 1083100 1334800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 868780 1458700 14873 1705200 842740 820150 820810 1239600 1284200 1103200 1387000 809030 1362000 85524 1708900 808410 899530 848070 1235100 1289800 1083100 1334800 1 1 1 1 1 1 1 1 1 1 1 86358000 47522000 38836000 14573 1564 13349 76385;76386 92257 92257 1 NLSELQDTSLQQLVSQR Unmodified 1958.0069 0.006882877 1924 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 71.54 71.451 3 1.648E-21 22628 20211116_3445_TMUAki_TMT10x_S_F6 161.75 147.77 1888000 3794700 52521 3444600 3042100 2430600 2645900 2360700 1843500 2306400 2740700 1758300 3539500 221640 3523600 2910100 2537100 2679700 2402100 1942400 2254800 2616000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1888000 3794700 52521 3444600 3042100 2430600 2645900 2360700 1843500 2306400 2740700 1758300 3539500 221640 3523600 2910100 2537100 2679700 2402100 1942400 2254800 2616000 1 1 1 1 1 1 1 1 1 1 1 476420000 0 476420000 14574 1924 13350 76387;76388 92258;92259 92259 2 NLSGQPNFPCR Unmodified 1288.5983 0.59825406 2876 Q9HD45 TM9SF3 Transmembrane 9 superfamily member 3 yes yes 0 0 0 0 By MS/MS By MS/MS 7.8 0.4 1 4 3 2 38.104 38.488 2;3 6.7173E-16 8716 20211116_3447_TMUAki_TMT10x_S_F8 209.39 186.35 463980 719970 0 987500 1301100 1004800 605730 751450 792410 578600 849190 431970 672800 44591 988780 1229700 1016900 656550 771630 799980 572210 817430 3 3 0 3 3 3 3 3 3 3 3 266580 406890 0 562560 1148900 859310 464750 414250 444140 321730 487600 248190 380260 31615 567350 1084200 847100 506550 440870 454280 318030 469020 2 2 0 2 2 2 2 2 2 2 2 197400 313070 0 424940 152170 145540 140970 337200 348270 256870 361590 183770 292550 12976 421430 145450 169810 150000 330770 345700 254180 348400 1 1 0 1 1 1 1 1 1 1 1 97655000 75175000 22480000 14575 2876 13351 76389;76390;76391;76392;76393 92260;92261;92262;92263;92264 92263 5 NLSLSIDER Unmodified 1045.5404 0.54038805 2161 Q8IXT5 RBM12B RNA-binding protein 12B yes yes 0 0 0 0 By MS/MS 3 0 1 1 47.058 46.714 2 0.0094423 15815 20211116_3441_TMUAki_TMT10x_S_F3 70.929 32.123 2305000 4561700 66496 5501000 1951200 1843000 1628200 3504000 3559400 3115400 4148600 2146700 4260100 248120 5490900 1866800 2140500 1728200 3467200 3557400 3058700 3983800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2305000 4561700 66496 5501000 1951200 1843000 1628200 3504000 3559400 3115400 4148600 2146700 4260100 248120 5490900 1866800 2140500 1728200 3467200 3557400 3058700 3983800 1 1 1 1 1 1 1 1 1 1 1 62829000 0 62829000 14576 2161 13352 76394 92265 92265 1 NLSPGAVESDVR Unmodified 1242.6204 0.62042929 1207 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 40.522 40.355 2 7.6052E-17 11727 20211116_3429_TMUAki_TMT10x_P_F2 213.69 178.86 1400200 2292500 24896 2915100 3664300 2454200 1502800 3232800 3238800 2137200 2772500 1303900 2141500 171000 2923000 3460700 2546100 1691100 3214800 3202400 2132400 2688900 3 3 3 3 3 3 3 3 3 3 3 486830 735890 9787.8 1078500 2081400 1665300 809270 1015800 1058700 741180 898260 453360 687950 71816 1084900 1964300 1645700 895120 1057300 1060400 735190 871480 1 1 1 1 1 1 1 1 1 1 1 913410 1556600 15108 1836600 1582900 788880 693490 2217000 2180100 1396000 1874200 850590 1453600 99185 1838200 1496400 900370 795970 2157400 2141900 1397200 1817400 2 2 2 2 2 2 2 2 2 2 2 177130000 95361000 81770000 14577 1207 13353 76395;76396;76397;76398 92266;92267;92268;92269 92266 4 NLSPVVSNELLEQAFSQFGPVEK Unmodified 2531.2908 0.29076888 2323 Q8WXF1;Q8WXF1-2 PSPC1 Paraspeckle component 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.81 2.16 2 1 2 4 3 4 9 7 80.879 80.883 3;4 5.8112E-78 26139 20211116_3447_TMUAki_TMT10x_S_F8 272.27 241.29 66088000 113290000 831440 97552000 78791000 101650000 84841000 69882000 62124000 65588000 86362000 61537000 105660000 5944600 100690000 75719000 102590000 85038000 72526000 65055000 64234000 82560000 18 18 11 18 18 18 18 18 18 18 18 41210000 69281000 599880 58432000 39662000 71121000 48110000 43913000 38087000 39975000 51859000 38374000 64606000 3797200 60567000 38269000 71059000 48048000 45903000 39675000 39204000 49600000 9 9 7 9 9 9 9 9 9 9 9 24878000 44013000 231560 39120000 39129000 30531000 36730000 25969000 24037000 25613000 34503000 23163000 41050000 2147400 40126000 37451000 31530000 36990000 26623000 25380000 25030000 32960000 9 9 4 9 9 9 9 9 9 9 9 25470000000 15802000000 9667500000 14578 2323 13354 76399;76400;76401;76402;76403;76404;76405;76406;76407;76408;76409;76410;76411;76412;76413;76414 92270;92271;92272;92273;92274;92275;92276;92277;92278;92279;92280;92281;92282;92283;92284;92285;92286;92287 92285 18 NLSPYVSNELLEEAFSQFGPIER Unmodified 2638.2915 0.29149716 777 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 By MS/MS By MS/MS 4.75 1.94 2 2 2 4 4 5 4 1 13 11 81.644 81.645 2;3;4 5.1678E-183 28931 20211116_3446_TMUAki_TMT10x_S_F7 429.66 329.44 24620000 41621000 237350 40613000 29075000 40310000 31435000 25902000 25114000 27461000 32238000 22925000 38833000 1295700 41498000 27946000 40760000 31567000 27109000 26079000 26755000 30878000 25 25 9 25 25 25 25 25 25 25 25 14078000 25188000 13049 23436000 13997000 28223000 16747000 15177000 15822000 16865000 18686000 13108000 23497000 487090 24103000 13487000 28163000 16814000 16140000 16238000 16402000 17937000 14 14 4 14 14 14 14 14 14 14 14 10542000 16433000 224300 17177000 15078000 12087000 14689000 10725000 9292200 10596000 13551000 9817200 15336000 808610 17395000 14459000 12597000 14753000 10969000 9840500 10354000 12941000 11 11 5 11 11 11 11 11 11 11 11 26312000000 13047000000 13265000000 14579 777 13355 76415;76416;76417;76418;76419;76420;76421;76422;76423;76424;76425;76426;76427;76428;76429;76430;76431;76432;76433;76434;76435;76436;76437;76438 92288;92289;92290;92291;92292;92293;92294;92295;92296;92297;92298;92299;92300;92301;92302;92303;92304;92305;92306;92307;92308;92309;92310;92311;92312;92313 92313 26 NLSSNEAISLEEIR Unmodified 1573.7948 0.79476484 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 2.64 0.881 1 4 4 2 5 6 55.901 55.685 2;3 1.0846E-50 19429 20211116_3441_TMUAki_TMT10x_S_F3 278.27 176.73 30383000 46855000 120970 51682000 34216000 43997000 34803000 29298000 29024000 29647000 37491000 28288000 43738000 2431100 52268000 32814000 44965000 35093000 30540000 30081000 28940000 35904000 8 8 3 8 8 8 8 8 8 8 8 18582000 27775000 110820 30443000 25834000 33418000 24505000 15740000 14731000 15905000 21457000 17301000 25927000 1597600 30913000 24735000 33463000 24623000 16900000 15652000 15527000 20491000 4 4 2 4 4 4 4 4 4 4 4 11801000 19080000 10144 21240000 8382400 10579000 10298000 13558000 14294000 13742000 16034000 10987000 17811000 833500 21356000 8079300 11502000 10469000 13640000 14428000 13413000 15413000 4 4 1 4 4 4 4 4 4 4 4 4697200000 2778900000 1918300000 14580 1433 13356 76439;76440;76441;76442;76443;76444;76445;76446;76447;76448;76449 92314;92315;92316;92317;92318;92319;92320;92321;92322 92319 9 NLTALGLNLVASGGTAK Unmodified 1598.8992 0.89917033 892 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 By MS/MS By MS/MS 3.09 0.793 3 4 4 5 6 75.952 75.873 2;3 2.9454E-108 25351 20211116_3442_TMUAki_TMT10x_S_F4 368.94 330.65 63490000 108140000 318030 97849000 72697000 102290000 84946000 74286000 73316000 73227000 84735000 59115000 100860000 5341000 100610000 70010000 103310000 85164000 76911000 75501000 71561000 81387000 14 14 6 14 14 14 14 14 14 14 14 34527000 56782000 287070 51994000 38196000 66987000 45508000 38060000 38403000 39049000 44757000 32150000 52966000 3089900 53605000 36820000 66667000 45559000 40186000 39605000 38097000 42978000 8 8 4 8 8 8 8 8 8 8 8 28963000 51354000 30958 45854000 34501000 35306000 39438000 36226000 34913000 34177000 39978000 26966000 47898000 2251000 47010000 33191000 36639000 39605000 36725000 35896000 33464000 38408000 6 6 2 6 6 6 6 6 6 6 6 18266000000 9142200000 9123700000 14581 892 13357 76450;76451;76452;76453;76454;76455;76456;76457;76458;76459;76460 92323;92324;92325;92326;92327;92328;92329;92330;92331;92332;92333;92334;92335;92336;92337 92337 15 NLTDAIAR Unmodified 872.47158 0.4715802 1995 Q6P2E9;Q6P2E9-2 EDC4 Enhancer of mRNA-decapping protein 4 yes no 0 0 0 0 By MS/MS 4 0 1 1 37.247 37.383 2 0.027893 9806 20211116_3442_TMUAki_TMT10x_S_F4 64.268 18.887 311790 511850 5098.6 530630 316690 296520 367790 307790 361990 378850 418380 290340 477680 30670 536500 305250 316770 370220 314500 370510 367080 401850 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 311790 511850 5098.6 530630 316690 296520 367790 307790 361990 378850 418380 290340 477680 30670 536500 305250 316770 370220 314500 370510 367080 401850 1 1 1 1 1 1 1 1 1 1 1 13688000 0 13688000 14582 1995 13358 76461 92338 92338 1 NLTGDVCAVMR Oxidation (M) 1250.5747 0.57474142 2379 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 0 0 1 0 By MS/MS 4 0 1 1 35.27 35.377 2 0.090729 8973 20211116_3442_TMUAki_TMT10x_S_F4 59.426 41.606 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14583 2379 13359 76462 92339 92339 2714 1 NLTNPNTVIILIGNK Unmodified 1622.9356 0.93555583 1295 P61106 RAB14 Ras-related protein Rab-14 yes yes 0 0 0 0 By MS/MS By MS/MS 3.2 0.4 4 1 3 2 76.734 76.637 2;3 1.4453E-60 27910 20211116_3441_TMUAki_TMT10x_S_F3 297.32 249.72 30198000 51510000 414590 44692000 35771000 53190000 39102000 36105000 34414000 35405000 39449000 28120000 48039000 2901700 46202000 34404000 53278000 39343000 37551000 35394000 34607000 37900000 6 6 4 6 6 6 6 6 6 6 6 18961000 30837000 319740 26912000 20652000 38664000 23686000 21687000 21041000 21385000 23333000 17657000 28760000 1887100 27908000 19897000 38282000 23785000 22897000 21603000 20898000 22438000 4 4 3 4 4 4 4 4 4 4 4 11238000 20673000 94850 17780000 15119000 14526000 15416000 14419000 13372000 14020000 16116000 10464000 19279000 1014700 18294000 14507000 14996000 15558000 14653000 13791000 13709000 15462000 2 2 1 2 2 2 2 2 2 2 2 5859200000 3214300000 2644800000 14584 1295 13360 76463;76464;76465;76466;76467 92340;92341;92342;92343;92344;92345 92345 6 NLTVILSDASAPGEGEHK Unmodified 1836.9218 0.92175626 2772 Q9H0D6;Q9H0D6-2 XRN2 5'-3' exoribonuclease 2 yes no 0 0 0 0 By MS/MS 4 0 1 1 56.983 56.936 3 1.2448E-17 17671 20211116_3442_TMUAki_TMT10x_S_F4 152.01 124.98 2390600 3601800 0 3928200 2116800 2164500 1795500 2845500 2772500 2403800 2720700 2225300 3362100 121740 3958000 2016900 2329100 1868300 2845500 2775900 2365900 2626100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2390600 3601800 0 3928200 2116800 2164500 1795500 2845500 2772500 2403800 2720700 2225300 3362100 121740 3958000 2016900 2329100 1868300 2845500 2775900 2365900 2626100 1 1 0 1 1 1 1 1 1 1 1 412320000 0 412320000 14585 2772 13361 76468 92346 92346 1 NLTWTLSNLCR Unmodified 1376.6871 0.68706906 1172 P52292 KPNA2 Importin subunit alpha-1 yes yes 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 66.463 66.29 2 2.6152E-14 23874 20211116_3441_TMUAki_TMT10x_S_F3 158.94 0 4296700 7402700 0 6797800 5185000 3978000 4212700 3621100 3261200 3887500 4944900 4000400 6905200 335360 6935400 4945000 4218400 4294500 3707700 3419000 3785800 4718000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4296700 7402700 0 6797800 5185000 3978000 4212700 3621100 3261200 3887500 4944900 4000400 6905200 335360 6935400 4945000 4218400 4294500 3707700 3419000 3785800 4718000 1 1 0 1 1 1 1 1 1 1 1 363800000 0 363800000 14586 1172 13362 76469;76470 92347;92348 92347 2 NLVAHGQAFSKPILDLGAEALIMQAR Oxidation (M) 2778.4851 0.48506878 1986 Q6NXE6;Q6NXE6-2 ARMC6 Armadillo repeat-containing protein 6 yes no 0 0 1 1 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 75.431 75.299 4 6.8278E-13 27391 20211116_3441_TMUAki_TMT10x_S_F3 119.75 108.54 6721800 12558000 60395 9158000 7894500 11094000 8277200 7938600 7781100 8423900 9410200 6259100 11705000 509870 9611700 7582900 11112000 8360600 8245200 7995500 8207300 9027200 5 5 4 5 5 5 5 5 5 5 5 2744400 5082400 1416 3786100 2691900 5735800 3241200 3224900 3107700 3293300 3607600 2555300 4737600 107980 3983100 2595000 5666600 3254800 3407600 3185100 3213600 3464600 2 2 1 2 2 2 2 2 2 2 2 3977400 7475500 58979 5371900 5202600 5358300 5036100 4713800 4673500 5130600 5802600 3703800 6967600 401880 5628600 4987900 5445100 5105800 4837600 4810400 4993700 5562600 3 3 3 3 3 3 3 3 3 3 3 1217700000 412020000 805680000 14587 1986 13363 76471;76472;76473 92349;92350;92351;92352;92353 92352 2540 5 NLVCTDLFTR Unmodified 1237.6125 0.61250714 810 P26196 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 0 0 0 0 By MS/MS By MS/MS 7.56 0.497 4 5 2 7 49.599 49.931 2 4.7578E-06 17690 20211116_3447_TMUAki_TMT10x_S_F8 141.29 112.78 18962000 31070000 237070 30724000 23148000 35426000 22366000 23848000 21531000 23140000 26394000 17657000 28990000 1851600 31438000 22190000 35540000 22702000 24810000 22114000 22629000 25311000 6 6 6 6 6 6 6 6 6 6 6 14165000 22614000 134080 22087000 17172000 30410000 17433000 17431000 16026000 16882000 19277000 13190000 21099000 1341400 22694000 16480000 30175000 17626000 18361000 16481000 16510000 18495000 3 3 3 3 3 3 3 3 3 3 3 4797100 8455600 102990 8636700 5976000 5016200 4933100 6416600 5505100 6258500 7116700 4467300 7890600 510200 8743900 5710100 5365000 5076100 6448500 5632600 6118900 6815400 3 3 3 3 3 3 3 3 3 3 3 3834700000 1878800000 1955900000 14588 810 13364 76474;76475;76476;76477;76478;76479;76480;76481;76482 92354;92355;92356;92357;92358;92359;92360;92361;92362 92361 9 NLVDSYVAIINK Unmodified 1347.7398 0.73981614 1140 P50570;P50570-3;P50570-2;P50570-5;P50570-4 DNM2 Dynamin-2 yes no 0 0 0 0 By MS/MS By MS/MS 6.6 2.8 1 4 3 2 75.829 75.803 2;3 1.3722E-19 24686 20211116_3436_TMUAki_TMT10x_P_F8 231.05 160.13 11291000 18518000 63404 17439000 12882000 17629000 13826000 13220000 12799000 13579000 14789000 10513000 17276000 1012800 17870000 12379000 17849000 13943000 13674000 13136000 13248000 14205000 4 4 2 4 4 4 4 4 4 4 4 5616500 8734100 0 8271800 5984000 10850000 6843200 6264800 6113400 6475000 6935600 5229500 8148100 466090 8509800 5759000 10791000 6873800 6607300 6280400 6315200 6665100 2 2 0 2 2 2 2 2 2 2 2 5674300 9784400 63404 9167400 6897700 6779000 6982800 6954800 6685300 7104300 7853600 5283800 9127600 546660 9360100 6619800 7057300 7069300 7066800 6855600 6932300 7539900 2 2 2 2 2 2 2 2 2 2 2 1558900000 1317800000 241100000 14589 1140 13365 76483;76484;76485;76486;76487 92363;92364;92365;92366;92367;92368 92365 6 NLVELAELELK Unmodified 1269.718 0.71801807 3192 Q9UNH7;Q9UNH7-2 SNX6 Sorting nexin-6;Sorting nexin-6, N-terminally processed yes no 0 0 0 0 By matching By MS/MS 3.67 0.471 1 2 1 2 79.207 79.183 2 3.1662E-08 28911 20211116_3441_TMUAki_TMT10x_S_F3 151.98 101.85 5969800 10504000 122070 9595900 7756400 6829100 7927900 5196600 5129700 5776200 7273900 5559400 9798100 633730 9812200 7448900 7091000 7946000 5383300 5417100 5617500 6950500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5969800 10504000 122070 9595900 7756400 6829100 7927900 5196600 5129700 5776200 7273900 5559400 9798100 633730 9812200 7448900 7091000 7946000 5383300 5417100 5617500 6950500 2 2 2 2 2 2 2 2 2 2 2 1346500000 426290000 920170000 14590 3192 13366 76488;76489;76490 92369;92370 92369 2 NLVEQHIQDIVVHYTFNK Unmodified 2196.1328 0.13275209 494 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 By MS/MS 8 0 1 1 74.292 74.158 4 4.876E-12 23449 20211116_3447_TMUAki_TMT10x_S_F8 128.69 114.82 9319100 16772000 23727 15842000 11062000 11130000 12263000 9558900 9464900 11169000 12500000 8676700 15646000 760780 16157000 10634000 11594000 12290000 9846300 9859100 10842000 11965000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9319100 16772000 23727 15842000 11062000 11130000 12263000 9558900 9464900 11169000 12500000 8676700 15646000 760780 16157000 10634000 11594000 12290000 9846300 9859100 10842000 11965000 3 3 1 3 3 3 3 3 3 3 3 905600000 0 905600000 14591 494 13367 76491 92371;92372;92373 92371 3 NLVPGESVYGEK Unmodified 1290.6456 0.6455814 765 P22087 FBL rRNA 2'-O-methyltransferase fibrillarin yes yes 0 0 0 0 By MS/MS By MS/MS 4.75 0.433 1 3 1 3 49.639 49.823 2;3 9.1892E-08 13445 20211116_3444_TMUAki_TMT10x_S_F5 138.94 60.002 1810500 3352300 7690.5 4441400 1721700 1340100 1627500 2711400 4039300 2277200 3535300 1685800 3132200 156030 4407700 1648900 1587300 1730400 2674600 3985900 2241900 3426000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1810500 3352300 7690.5 4441400 1721700 1340100 1627500 2711400 4039300 2277200 3535300 1685800 3132200 156030 4407700 1648900 1587300 1730400 2674600 3985900 2241900 3426000 1 1 1 1 1 1 1 1 1 1 1 340740000 0 340740000 14592 765 13368 76492;76493;76494;76495 92374;92375;92376;92377 92375 4 NLVPGESVYGEKR Unmodified 1446.7467 0.74669243 765 P22087 FBL rRNA 2'-O-methyltransferase fibrillarin yes yes 0 0 0 1 By MS/MS 6 0 1 1 39.748 39.912 3 0.00076235 9774 20211116_3445_TMUAki_TMT10x_S_F6 68.761 42.135 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14593 765 13369 76496 92378 92378 1 NLVPLLLAPENLVEK Unmodified 1660.9764 0.97635802 2257 Q8NHH9;Q8NHH9-2;Q8NHH9-3;Q8NHH9-5;Q8NHH9-4 ATL2 Atlastin-2 yes no 0 0 0 0 By MS/MS By MS/MS 7.4 0.8 1 1 3 1 4 80.123 80.131 2;3 0.00014477 25884 20211116_3447_TMUAki_TMT10x_S_F8 84.365 61.448 12629000 20718000 74095 17644000 13229000 18304000 15089000 12091000 11126000 11450000 14666000 11759000 19321000 1071400 18227000 12732000 18467000 15085000 12588000 11618000 11209000 14038000 2 2 1 2 2 2 2 2 2 2 2 5126300 9089000 0 7585800 4680600 9169100 5133800 5658800 4486800 4863500 6199700 4772600 8475400 365710 7868600 4495900 9164300 5163700 5906800 4653600 4782700 5927600 1 1 0 1 1 1 1 1 1 1 1 7502800 11629000 74095 10058000 8548200 9134900 9954700 6432100 6638900 6586600 8466200 6986400 10845000 705730 10358000 8236300 9302300 9921300 6680800 6963900 6426500 8110500 1 1 1 1 1 1 1 1 1 1 1 2125400000 590390000 1535000000 14594 2257 13370 76497;76498;76499;76500;76501 92379;92380;92381 92381 3 NLVQCGDFPHLLVYGPSGAGKK Unmodified 2356.1998 0.1997858 991 P40938;P40938-2 RFC3 Replication factor C subunit 3 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 62.033 61.726 4 1.2085E-19 21935 20211116_3441_TMUAki_TMT10x_S_F3 148.88 140.38 46288000 81779000 499870 76430000 56131000 71205000 53452000 43146000 38563000 45861000 55815000 43102000 76288000 4383400 78270000 53780000 72231000 53898000 45365000 40495000 44678000 53309000 7 7 5 7 7 7 7 7 7 7 7 24903000 41874000 262490 39078000 29636000 50161000 30493000 24769000 22956000 25356000 29501000 23189000 39062000 2332400 40229000 28451000 49846000 30652000 26482000 23916000 24739000 28256000 4 4 3 4 4 4 4 4 4 4 4 21385000 39905000 237380 37351000 26495000 21044000 22959000 18377000 15607000 20505000 26314000 19913000 37226000 2051000 38041000 25329000 22384000 23246000 18883000 16579000 19939000 25053000 3 3 2 3 3 3 3 3 3 3 3 5462900000 2916100000 2546800000 14595 991 13371 76502;76503;76504;76505 92382;92383;92384;92385;92386;92387;92388 92388 7 NLVSPAYCTQESREEIPGGEAR Unmodified 2462.1496 0.14960072 2956 Q9NUQ3 TXLNG Gamma-taxilin yes yes 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 43.092 43.243 3 5.6003E-46 11963 20211116_3442_TMUAki_TMT10x_S_F4 218.21 196.36 1947100 3395200 15476 3649900 3388000 3990800 2487100 2833400 2804600 2344000 3025200 1812900 3169000 182900 3710600 3226000 4018600 2579700 2924600 2847200 2309500 2911500 3 3 1 3 3 3 3 3 3 3 3 1356500 2273900 15476 2503400 2903900 3559700 2183000 1875300 1887000 1585700 2011900 1263000 2122600 139430 2553500 2766600 3523400 2242800 1983000 1937000 1560600 1937000 2 2 1 2 2 2 2 2 2 2 2 590630 1121300 0 1146500 484130 431110 304130 958070 917670 758310 1013300 549900 1046400 43472 1157100 459420 495150 336900 941520 910110 748830 974490 1 1 0 1 1 1 1 1 1 1 1 334480000 218610000 115860000 14596 2956 13372 76506;76507 92389;92390;92391 92391 3 NLVTEDVMR Oxidation (M) 1091.5281 0.5281088 522 P06744;P06744-2 GPI Glucose-6-phosphate isomerase yes no 0 0 1 0 By MS/MS By MS/MS 2 0.894 2 1 2 3 2 36.022 35.918 2 0.00255 11344 20211116_3441_TMUAki_TMT10x_S_F3 93.938 76.553 2061500 3125100 4187 4149200 3345700 2369800 1878400 1761900 1952500 1612100 2687100 1919400 2919900 174850 4133900 3170200 2510300 1984400 1817600 2009100 1580600 2569400 5 5 1 5 5 5 5 5 5 5 5 1083100 1581500 0 2172700 2560800 1732200 1107100 809840 900030 771800 1351200 1008400 1478000 93774 2168100 2417800 1771100 1192600 868800 940700 755340 1289500 3 3 0 3 3 3 3 3 3 3 3 978410 1543600 4187 1976500 784910 637610 771300 952060 1052400 840320 1335900 911010 1442000 81078 1965800 752440 739200 791780 948770 1068400 825300 1279900 2 2 1 2 2 2 2 2 2 2 2 340380000 154610000 185760000 14597 522 13373 76508;76509;76510;76511;76512 92392;92393;92394;92395;92396 92396 437 5 NLVTEDVMR Unmodified 1075.5332 0.53319418 522 P06744;P06744-2 GPI Glucose-6-phosphate isomerase yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 45.149 44.987 2 4.4499E-05 15123 20211116_3441_TMUAki_TMT10x_S_F3 150.62 108.78 4280100 6115200 16858 9124700 6659600 4679700 4149000 3417100 3092100 2990000 5348400 3985100 5717400 377490 9029700 6321700 5013200 4307000 3525200 3272000 2937800 5089500 2 2 1 2 2 2 2 2 2 2 2 2096600 2974100 0 4375000 4967400 3749000 2720200 1894500 1781900 1539600 2668100 1951900 2780400 187630 4354900 4704700 3816100 2847700 2009100 1885300 1518300 2546400 1 1 0 1 1 1 1 1 1 1 1 2183500 3141100 16858 4749800 1692200 930760 1428800 1522700 1310200 1450400 2680300 2033200 2937000 189860 4674800 1616900 1197100 1459400 1516100 1386700 1419500 2543200 1 1 1 1 1 1 1 1 1 1 1 221410000 117300000 104110000 14598 522 13373 76513;76514 92397;92398 92398 2 NLVTGDHIPTPQDLPQR Unmodified 1899.9803 0.9802742 243 O43768;O43768-3;O43768-6;O43768-5;O43768-2;O43768-9;O43768-7;O43768-4 ENSA Alpha-endosulfine yes no 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 49.701 49.846 3 0.0029399 13420 20211116_3434_TMUAki_TMT10x_P_F6 62.94 48.783 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14599 243 13374 76515;76516;76517 92399;92400;92401 92399 3 NLVTGDHIPTPQDLPQRK Unmodified 2028.0752 0.075237214 243 O43768;O43768-3;O43768-6;O43768-5;O43768-2;O43768-9;O43768-7;O43768-4 ENSA Alpha-endosulfine yes no 0 0 0 1 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 46.319 46.557 4 5.0867E-12 12655 20211116_3436_TMUAki_TMT10x_P_F8 126.63 100.77 36093000 65237000 286920 67811000 57391000 61087000 39490000 57778000 55070000 51038000 54746000 33607000 60883000 2778000 68896000 54581000 62572000 41475000 58710000 55331000 50124000 52822000 9 9 6 9 9 9 9 9 9 9 9 18639000 34471000 168300 33697000 40934000 45240000 26905000 30364000 28082000 24517000 26320000 17354000 32163000 1797400 34604000 38893000 45041000 28061000 31448000 28454000 24185000 25444000 5 5 4 5 5 5 5 5 5 5 5 17454000 30766000 118620 34114000 16456000 15847000 12585000 27414000 26988000 26521000 28427000 16252000 28720000 980640 34292000 15688000 17531000 13414000 27262000 26877000 25939000 27377000 4 4 2 4 4 4 4 4 4 4 4 8914600000 5504700000 3409900000 14600 243 13375 76518;76519;76520;76521;76522 92402;92403;92404;92405;92406;92407;92408;92409;92410 92405 9 NLVVIPK Unmodified 781.50617 0.5061748 680 P15121 AKR1B1 Aldose reductase yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 52.4 52.444 2 0.0045794 17045 20211116_3439_TMUAki_TMT10x_S_F1 112.75 26.897 59591000 93184000 350800 104520000 82957000 81703000 62703000 62592000 63700000 60821000 80598000 55487000 86993000 5479400 105480000 79047000 84211000 64692000 64550000 65359000 59474000 77227000 6 6 3 6 6 6 6 6 6 6 6 26085000 39560000 7429.2 44653000 49264000 54333000 31260000 27239000 29130000 26983000 34393000 24288000 36932000 2471900 45339000 46783000 54145000 32584000 29054000 29915000 26364000 33015000 2 2 1 2 2 2 2 2 2 2 2 33506000 53624000 343370 59865000 33692000 27370000 31443000 35353000 34569000 33838000 46205000 31199000 50060000 3007500 60145000 32264000 30066000 32108000 35496000 35445000 33110000 44212000 4 4 2 4 4 4 4 4 4 4 4 3387600000 2040800000 1346700000 14601 680 13376 76523;76524;76525;76526;76527;76528 92411;92412;92413;92414;92415;92416;92417 92415 7 NLYHNLCTSLFPTIHGNDEVKR Unmodified 2627.2915 0.29145435 1716 Q14566 MCM6 DNA replication licensing factor MCM6 yes yes 0 0 0 1 By MS/MS By matching 1.33 0.471 2 1 2 1 54.248 54.066 5 2.2294E-10 15670 20211116_3428_TMUAki_TMT10x_P_F1 103.71 83.452 16611000 27528000 53559 28109000 23634000 37227000 19895000 18776000 19106000 19274000 19687000 15465000 25688000 1357200 28771000 22559000 36947000 20351000 20036000 19493000 18803000 18973000 4 4 1 4 4 4 4 4 4 4 4 16611000 27528000 53559 28109000 23634000 37227000 19895000 18776000 19106000 19274000 19687000 15465000 25688000 1357200 28771000 22559000 36947000 20351000 20036000 19493000 18803000 18973000 4 4 1 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1925200000 1636400000 288870000 14602 1716 13377 76529;76530;76531 92418;92419;92420;92421 92419 4 NLYHSEAFSINFR Unmodified 1596.7685 0.76849051 45 CON__P34955 yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 2.71 2 2 1 2 2 4 5 53.819 53.868 3 1.012E-14 15589 20211116_3428_TMUAki_TMT10x_P_F1 164.53 133.66 + 76830000 132710000 269410 138160000 124490000 74596000 66468000 88983000 77920000 78371000 103860000 71532000 123850000 6459800 139610000 117870000 80238000 70810000 89428000 79689000 76979000 99383000 13 13 5 13 13 13 13 13 13 13 13 15541000 26382000 89721 26645000 32878000 40800000 26069000 25876000 23696000 22027000 22692000 14471000 24619000 1602700 27375000 31359000 40356000 26726000 26947000 24175000 21671000 21921000 4 4 3 4 4 4 4 4 4 4 4 61289000 106320000 179690 111520000 91611000 33797000 40399000 63107000 54224000 56344000 81164000 57061000 99230000 4857100 112240000 86511000 39882000 44084000 62482000 55514000 55308000 77462000 9 9 2 9 9 9 9 9 9 9 9 7041600000 3792800000 3248900000 14603 45 13378 76532;76533;76534;76535;76536;76537;76538;76539;76540 92422;92423;92424;92425;92426;92427;92428;92429;92430;92431;92432;92433;92434 92422 13 NLYIISVK Unmodified 948.56442 0.56441796 1369 P62829 RPL23 60S ribosomal protein L23 yes yes 0 0 0 0 By MS/MS By MS/MS 3.7 2.69 2 3 2 1 2 6 4 61.749 61.661 2;3 0.00041995 21914 20211116_3441_TMUAki_TMT10x_S_F3 144.12 90.952 195990000 313660000 1456400 310720000 240970000 278130000 207820000 222360000 209940000 212170000 253360000 182490000 292670000 17358000 316710000 230250000 284090000 212600000 228590000 215030000 207640000 243060000 13 13 6 13 13 13 13 13 13 13 13 97677000 153500000 893030 150170000 141030000 191730000 113800000 110050000 105040000 106030000 124060000 90951000 143220000 9199000 154050000 134580000 190920000 116580000 115900000 107920000 103720000 119090000 7 7 3 7 7 7 7 7 7 7 7 98316000 160160000 563420 160550000 99938000 86399000 94027000 112310000 104910000 106140000 129300000 91542000 149450000 8158600 162650000 95675000 93174000 96021000 112700000 107110000 103920000 123980000 6 6 3 6 6 6 6 6 6 6 6 25164000000 14565000000 10599000000 14604 1369 13379 76541;76542;76543;76544;76545;76546;76547;76548;76549;76550 92435;92436;92437;92438;92439;92440;92441;92442;92443;92444;92445;92446;92447 92445 13 NLYPSSSPYTR Unmodified 1283.6146 0.61461563 3256 Q9Y2Z0;Q9Y2Z0-2 SUGT1 Suppressor of G2 allele of SKP1 homolog yes no 0 0 0 0 By MS/MS By MS/MS 7 0.667 2 5 2 3 6 36.998 37.316 2 2.6944E-24 11080 20211116_3435_TMUAki_TMT10x_P_F7 256.38 193.83 1517700 2231300 14004 3355900 5163800 3780600 2124500 2725800 3391800 1874400 2736500 1413100 2086200 176590 3350500 4875000 3801500 2353200 2799100 3371900 1865700 2660100 8 8 2 8 8 8 8 8 8 8 8 1045500 1528400 14004 2280300 4800400 3464100 1760600 1902400 2376100 1297100 1858200 973600 1429000 151210 2290900 4527200 3420900 1963900 1994900 2372000 1291700 1808500 3 3 2 3 3 3 3 3 3 3 3 472120 702840 0 1075600 363410 316530 363900 823420 1015700 577280 878300 439510 657220 25382 1059600 347850 380670 389270 804250 999870 573940 851510 5 5 0 5 5 5 5 5 5 5 5 547880000 413620000 134260000 14605 3256 13380 76551;76552;76553;76554;76555;76556;76557;76558;76559 92448;92449;92450;92451;92452;92453;92454;92455;92456;92457 92449 10 NLYSDDIPHALR Unmodified 1412.7048 0.70482762 1272 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 45.73 45.779 3 6.1347E-12 13010 20211116_3442_TMUAki_TMT10x_S_F4 162.49 145.12 12065000 20529000 144360 22998000 16940000 19431000 13714000 16032000 16412000 14606000 18209000 11235000 19165000 1185500 23234000 16170000 19938000 14163000 16429000 16642000 14324000 17510000 6 6 5 6 6 6 6 6 6 6 6 6161700 9905100 39909 11214000 11941000 14012000 8139900 8073000 7980000 7043900 9225200 5737300 9247400 611370 11389000 11355000 13968000 8450400 8476900 8169500 6921800 8860700 3 3 2 3 3 3 3 3 3 3 3 5903400 10624000 104460 11784000 4999500 5418800 5573900 7959100 8431700 7562200 8983600 5497500 9917500 574120 11845000 4814500 5970100 5712300 7952200 8472300 7402000 8649100 3 3 3 3 3 3 3 3 3 3 3 2951000000 1272700000 1678200000 14606 1272 13381 76560;76561;76562;76563;76564;76565 92458;92459;92460;92461;92462;92463 92462 6 NMAEQIIQEIYSQIQSK Oxidation (M) 2038.0041 0.004105685 853 P29401;P29401-2 TKT Transketolase yes no 0 0 1 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 80.985 80.999 3 6.8114E-22 26788 20211116_3436_TMUAki_TMT10x_P_F8 172.32 154.83 14955000 26043000 93860 19888000 17933000 23749000 20370000 18360000 19253000 18644000 20372000 13925000 24278000 792490 20782000 17259000 23835000 20500000 18947000 19675000 18197000 19618000 6 6 3 6 6 6 6 6 6 6 6 5083100 8402200 47225 6924200 4676000 10108000 5175000 6454400 6357200 6257200 6824900 4733200 7834700 459730 7215800 4499000 10019000 5259700 6740900 6432200 6119300 6569300 2 2 2 2 2 2 2 2 2 2 2 9871800 17641000 46635 12964000 13257000 13641000 15195000 11905000 12896000 12387000 13547000 9191700 16443000 332760 13566000 12760000 13816000 15240000 12206000 13243000 12078000 13048000 4 4 1 4 4 4 4 4 4 4 4 6396300000 3779100000 2617200000 14607 853 13382 76566;76567;76568;76569 92464;92465;92466;92467;92468;92469 92464 1021 6 NMFLVGEGDSVITQVLNK Unmodified 1963.0085 0.0084627814 336 O75475 PSIP1 PC4 and SFRS1-interacting protein yes yes 0 0 0 0 By matching By MS/MS 8 0 2 1 1 80.033 80.028 3 2.109E-06 25828 20211116_3447_TMUAki_TMT10x_S_F8 97.284 79.484 2057300 3318800 11825 3401300 2473300 1930700 2689200 1417700 1457200 1543000 2230000 1915700 3097100 187410 3442000 2377700 2046100 2678400 1471100 1563800 1501900 2127300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2057300 3318800 11825 3401300 2473300 1930700 2689200 1417700 1457200 1543000 2230000 1915700 3097100 187410 3442000 2377700 2046100 2678400 1471100 1563800 1501900 2127300 1 1 1 1 1 1 1 1 1 1 1 854860000 464000000 390860000 14608 336 13383 76570;76571 92470 92470 1 NMGGPYGGGNYGPGGSGGSGGYGGR Oxidation (M) 2204.893 0.89299211 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 1 0 By MS/MS By MS/MS 5.79 1.64 1 2 4 6 3 3 12 7 32.411 32.587 2;3 8.5026E-97 8649 20211116_3433_TMUAki_TMT10x_P_F5 289.65 284.46 2300800 4058000 26371 7352900 15525000 10850000 6208000 5706300 9263700 3198900 6231600 2141900 3798900 327790 7320800 14649000 10722000 6878800 5986400 9183000 3227500 6105200 28 28 12 28 28 28 28 28 28 28 28 1918000 3416800 17128 6195600 15311000 10669000 5988300 4999100 8184600 2777000 5358800 1785500 3198600 296900 6191200 14443000 10466000 6629600 5302400 8130100 2803700 5256900 20 20 7 20 20 20 20 20 20 20 20 382790 641240 9242.8 1157300 213820 180820 219700 707260 1079100 421880 872790 356470 600270 30892 1129600 205540 256270 249150 683980 1052900 423790 848330 8 8 5 8 8 8 8 8 8 8 8 5043500000 3943500000 1100000000 14609 772 13384 76572;76573;76574;76575;76576;76577;76578;76579;76580;76581;76582;76583;76584;76585;76586;76587;76588;76589;76590 92471;92472;92473;92474;92475;92476;92477;92478;92479;92480;92481;92482;92483;92484;92485;92486;92487;92488;92489;92490;92491;92492;92493;92494;92495;92496;92497;92498 92475 901 28 NMGGPYGGGNYGPGGSGGSGGYGGR Unmodified 2188.8981 0.89807748 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 By MS/MS By MS/MS 7.22 0.786 2 3 4 5 4 39.953 40.206 2;3 6.3167E-287 11478 20211116_3435_TMUAki_TMT10x_P_F7 491.53 460 4773900 7784300 29036 14955000 18330000 11975000 10713000 4202700 3432900 3961600 8096900 4445000 7290400 449030 14706000 17385000 12209000 11039000 4658100 3976500 3879000 7666400 12 12 5 12 12 12 12 12 12 12 12 3521000 5761700 29036 10712000 17923000 11666000 10323000 3299800 2630400 2986100 5918300 3278500 5394700 433920 10593000 16995000 11638000 10631000 3767800 3129300 2929300 5607400 9 9 5 9 9 9 9 9 9 9 9 1252900 2022700 0 4243200 406940 309120 389260 902960 802480 975480 2178600 1166500 1895700 15104 4113100 389600 570920 408560 890260 847130 949710 2059000 3 3 0 3 3 3 3 3 3 3 3 4408500000 3941400000 467100000 14610 772 13384 76591;76592;76593;76594;76595;76596;76597;76598;76599 92499;92500;92501;92502;92503;92504;92505;92506;92507;92508;92509;92510;92511;92512 92503 14 NMIIELLR Oxidation (M) 1016.5689 0.56885141 3391 yes yes 0 0 1 0 By MS/MS 2 0 1 1 27.044 27.086 3 0.075461 5819 20211116_3440_TMUAki_TMT10x_S_F2 44.395 8.1993 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14611 3391 13385 76600 92513 92513 3317 1 NMINIISR Oxidation (M) 975.51715 0.51715019 1218 P54136 RARS Arginine--tRNA ligase, cytoplasmic yes yes 0 0 1 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 36.905 37.317 2 0.029841 10306 20211116_3435_TMUAki_TMT10x_P_F7 71.692 16.322 1023700 1638000 10388 1684000 1651900 1617000 1157100 1015000 1130200 1043300 1366100 953250 1528600 102470 1713700 1572100 1637900 1198800 1063200 1159400 1017800 1310500 3 3 2 3 3 3 3 3 3 3 3 661220 1038300 10388 1085000 1362600 1281500 786830 659100 722590 674910 863180 615740 969040 74324 1106600 1292700 1279400 826230 702010 742910 658500 828330 2 2 2 2 2 2 2 2 2 2 2 362500 599650 0 598960 289320 335510 370320 355880 407660 368410 502910 337520 559540 28149 607150 279390 358510 372550 361180 416470 359290 482190 1 1 0 1 1 1 1 1 1 1 1 75267000 55446000 19821000 14612 1218 13386 76601;76602;76603 92514;92515 92514 1634 2 NMITGTAPLDGCILVVAANDGPMPQTR 2 Oxidation (M) 2843.3616 0.36158411 1097 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 2 0 By MS/MS 6 0 1 1 71.109 71.02 3 9.8065E-06 22450 20211116_3445_TMUAki_TMT10x_S_F6 67.367 58.157 433380 1033600 9236.6 902610 734060 836780 720340 675640 699830 592250 744080 403590 963970 48750 929070 704070 852900 730760 692580 714420 581860 716410 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 433380 1033600 9236.6 902610 734060 836780 720340 675640 699830 592250 744080 403590 963970 48750 929070 704070 852900 730760 692580 714420 581860 716410 1 1 1 1 1 1 1 1 1 1 1 530200000 0 530200000 14613 1097 13387 76604 92516 92516 1455;1456 1 NMITGTAPLDGCILVVAANDGPMPQTR Oxidation (M) 2827.3667 0.36666949 1097 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 1 0 By MS/MS 6.5 0.5 1 1 2 75.867 75.898 3 3.068E-18 26515 20211116_3446_TMUAki_TMT10x_S_F7 136.3 128.31 1348800 2823300 24041 1917300 2054500 1950300 1959300 1678300 1510400 1732000 1939700 1256100 2631000 143080 2020400 1968900 1978700 1978500 1721700 1571400 1689300 1857900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1348800 2823300 24041 1917300 2054500 1950300 1959300 1678300 1510400 1732000 1939700 1256100 2631000 143080 2020400 1968900 1978700 1978500 1721700 1571400 1689300 1857900 2 2 1 2 2 2 2 2 2 2 2 616140000 0 616140000 14614 1097 13387 76605;76606 92517;92518 92518 1455;1456 2 NMLFSGTNIAAGK Oxidation (M) 1338.6602 0.66018561 697 P16615;P16615-5;P16615-2;P16615-3;P16615-4;O14983;O14983-3;O14983-2 ATP2A2;ATP2A1 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 yes no 0 0 1 0 By MS/MS By MS/MS 4.5 3.5 1 1 1 1 53.39 53.1 3 2.1365E-06 17328 20211116_3439_TMUAki_TMT10x_S_F1 111.12 84.496 1101100 1857500 34303 2127200 986360 955870 875150 1914400 1994300 1534900 1869000 1025500 1734300 121650 2133500 945050 1067600 928160 1886700 1975400 1514700 1806800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1101100 1857500 34303 2127200 986360 955870 875150 1914400 1994300 1534900 1869000 1025500 1734300 121650 2133500 945050 1067600 928160 1886700 1975400 1514700 1806800 1 1 1 1 1 1 1 1 1 1 1 132740000 0 132740000 14615 697 13388 76607;76608 92519;92520 92520 783 2 NMLIRTHMHDLK Unmodified 1507.7752 0.77517256 2600 Q99719 SEPT5 Septin-5 yes yes 0 0 0 1 By MS/MS 5 0 1 1 98.068 98.028 3 0.080408 31923 20211116_3444_TMUAki_TMT10x_S_F5 43.084 15.223 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14616 2600 13389 76609 92521 92521 1 NMLTEELYGNTFQLYK Oxidation (M) 1978.9346 0.93462914 1799 Q15397 KIAA0020 Pumilio domain-containing protein KIAA0020 yes yes 0 0 1 0 By MS/MS 7 0 1 1 76.788 76.897 3 0.012654 26539 20211116_3435_TMUAki_TMT10x_P_F7 47 28.635 2832500 5277200 49993 4464400 3177500 6372000 3919800 4018100 3792800 3883800 4177100 2637700 4921200 286260 4640400 3068400 6320800 3933300 4200100 3877700 3798700 4017600 1 1 1 1 1 1 1 1 1 1 1 2832500 5277200 49993 4464400 3177500 6372000 3919800 4018100 3792800 3883800 4177100 2637700 4921200 286260 4640400 3068400 6320800 3933300 4200100 3877700 3798700 4017600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 316720000 316720000 0 14617 1799 13390 76610 92522 92522 2423 1 NMMAACDPR Oxidation (M) 1080.4151 0.41506966 1418;1668;2689;539;1640;488;2673;1889 Q13509;Q13509-2;P07437;A6NNZ2;P68371;Q13885;Q3ZCM7;Q9BVA1;P04350;Q9BUF5 TUBB3;TUBB;TUBB4B;TUBB2A;TUBB8;TUBB2B;TUBB4A;TUBB6 Tubulin beta-3 chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-6 chain no no 0 0 1 0 By MS/MS By MS/MS 3.75 1.2 2 1 2 3 6 2 28.244 28.154 2 0.010094 5838 20211116_3431_TMUAki_TMT10x_P_F4 75.213 37.567 831540 1403200 3557.1 1384800 1540300 928760 1031700 342180 376430 415060 996650 774190 1309300 71556 1407200 1463600 961110 1052800 379690 433630 402370 942230 7 7 2 7 7 7 7 7 7 7 7 585110 965030 3557.1 975730 1238900 782590 743450 277720 317160 322160 694280 544750 900520 52176 991760 1175100 797820 766820 309170 354690 312810 658070 5 5 2 5 5 5 5 5 5 5 5 246430 438160 0 409070 301380 146170 288290 64464 59273 92898 302370 229440 408740 19380 415440 288530 163290 286020 70517 78947 89558 284160 2 2 0 2 2 2 2 2 2 2 2 177350000 141050000 36308000 14618 1640;539;1418;1668;1889;2689;488;2673 13391 76611;76612;76613;76614;76615;76616;76617;76618 92523;92524;92525;92526;92527;92528 92524 385;386 6 NMMAACDPR Unmodified 1064.4202 0.42015503 1418;1668;2689;539;1640;488;2673;1889 Q13509;Q13509-2;P07437;A6NNZ2;P68371;Q13885;Q3ZCM7;Q9BVA1;P04350;Q9BUF5 TUBB3;TUBB;TUBB4B;TUBB2A;TUBB8;TUBB2B;TUBB4A;TUBB6 Tubulin beta-3 chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-6 chain no no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 32.421 32.459 2 9.9948E-05 7900 20211116_3433_TMUAki_TMT10x_P_F5 140.09 123.89 3014300 4926000 194.17 5858100 7293700 3124300 4027800 996180 994060 1045600 3691600 2806400 4599900 278070 5869500 6909300 3303600 4162500 1121700 1239800 1019100 3477600 5 5 1 5 5 5 5 5 5 5 5 2324600 3693600 0 4433800 6567900 2842600 3299600 861630 890440 875070 2863900 2164300 3449300 224960 4447100 6213700 2949500 3443200 976420 1081300 854090 2701600 2 2 0 2 2 2 2 2 2 2 2 689660 1232400 194.17 1424300 725760 281670 728270 134550 103620 170490 827730 642100 1150700 53111 1422400 695660 354120 719250 145300 158440 165030 776070 3 3 1 3 3 3 3 3 3 3 3 281160000 234990000 46169000 14619 1640;539;1418;1668;1889;2689;488;2673 13391 76619;76620;76621 92529;92530;92531;92532;92533 92530 5 NMPQADAMVLVAR 2 Oxidation (M) 1446.6959 0.69591919 2865 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 yes yes 0 0 2 0 By MS/MS By MS/MS 4 0 4 2 2 37.751 37.838 2;3 0.0014182 9326 20211116_3442_TMUAki_TMT10x_S_F4 73.655 58.79 1753600 2788300 1125.2 3337900 4549100 4516000 2608600 3137000 3283200 2456600 2829400 1632800 2603800 176720 3384000 4312800 4496900 2768400 3238800 3294500 2427300 2743500 6 6 2 6 6 6 6 6 6 6 6 1455800 2252200 1018.7 2835000 4266200 4221700 2329200 2659500 2758300 2044900 2376900 1355500 2103700 160220 2871700 4042000 4180100 2477200 2764400 2773800 2022500 2304700 2 2 1 2 2 2 2 2 2 2 2 297780 536110 106.47 502880 282860 294290 279400 477590 524920 411740 452500 277220 500120 16508 512250 270840 316790 291190 474360 520700 404840 438760 4 4 1 4 4 4 4 4 4 4 4 143590000 120600000 22997000 14620 2865 13392 76622;76623;76624;76625 92534;92535;92536;92537;92538;92539 92539 2990;2991 6 NMQNVEHVPLSLDR Oxidation (M) 1666.8097 0.80970339 745 P20618 PSMB1 Proteasome subunit beta type-1 yes yes 0 0 1 0 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 37.917 37.762 3 3.337E-05 12069 20211116_3441_TMUAki_TMT10x_S_F3 97.767 84.339 1442700 2064000 3102.9 2720000 2992600 2274900 1362500 1687600 2054000 1496400 1905000 1343100 1928400 116420 2721900 2826800 2331800 1488700 1739700 2054000 1469400 1842300 2 2 1 2 2 2 2 2 2 2 2 930070 1300000 0 1666300 2645500 1956800 1073700 1189700 1538900 1025900 1235000 865760 1214400 73345 1678400 2495300 1958300 1185700 1243400 1534500 1008700 1200800 1 1 0 1 1 1 1 1 1 1 1 512640 764000 3102.9 1053700 347030 318120 288770 497840 515050 470510 670000 477340 713980 43074 1043500 331480 373490 302960 496280 519570 460650 641530 1 1 1 1 1 1 1 1 1 1 1 293810000 252110000 41706000 14621 745 13393 76626;76627;76628 92540;92541 92541 855 2 NMQNVEHVPLSLDR Unmodified 1650.8148 0.81478877 745 P20618 PSMB1 Proteasome subunit beta type-1 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 3 2 1 44.926 45.059 3 0.0014482 11574 20211116_3444_TMUAki_TMT10x_S_F5 64.842 53.896 3030600 5227300 51304 6264000 2732800 2329500 2775700 3693200 3872200 3312900 4619000 2822200 4881500 293720 6258200 2624500 2646500 2847200 3674800 3917800 3251200 4432700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3030600 5227300 51304 6264000 2732800 2329500 2775700 3693200 3872200 3312900 4619000 2822200 4881500 293720 6258200 2624500 2646500 2847200 3674800 3917800 3251200 4432700 2 2 1 2 2 2 2 2 2 2 2 260040000 106690000 153350000 14622 745 13393 76629;76630;76631 92542;92543;92544 92544 3 NMSGSLYEMVSR 2 Oxidation (M) 1404.6014 0.6013501 1550 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 2 0 By MS/MS By MS/MS 4.75 0.829 2 1 1 2 2 35.646 35.744 2;3 0.030321 8669 20211116_3431_TMUAki_TMT10x_P_F4 50.116 39.414 915620 1488000 9266.8 1725700 2385000 2074600 1389900 1005000 1142600 976940 1394700 852590 1389300 102550 1749000 2262200 2068000 1454200 1074900 1182100 955290 1337700 3 3 2 3 3 3 3 3 3 3 3 889190 1424400 7619.3 1659600 2359000 2049800 1370400 978020 1120800 944790 1334200 827960 1330000 98833 1682300 2237400 2040000 1434000 1047500 1158700 924100 1280500 2 2 1 2 2 2 2 2 2 2 2 26436 63552 1647.5 66118 25971 24891 19504 26968 21826 32149 60536 24627 59310 3720.7 66653 24839 27947 20193 27470 23476 31185 57199 1 1 1 1 1 1 1 1 1 1 1 169800000 153070000 16723000 14623 1550 13394 76632;76633;76634;76635 92545;92546 92546 2086;2087 2 NMSIIDAFK Unmodified 1037.5216 0.52156686 1130 P49959;P49959-3 MRE11A Double-strand break repair protein MRE11A yes no 0 0 0 0 By MS/MS 8 0 1 1 69.292 69.394 2 2.4291E-05 22029 20211116_3436_TMUAki_TMT10x_P_F8 140.16 117.14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14624 1130 13395 76636 92547 92547 1 NMSVIAHVDHGK Oxidation (M) 1322.6401 0.64011887 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 1 0 By MS/MS By MS/MS 4.09 1.5 2 2 7 6 5 29.309 29.339 3;4 1.7887E-07 6617 20211116_3433_TMUAki_TMT10x_P_F5 129.54 114.66 3312700 5207800 25691 4762300 3881900 5401900 3208300 2280800 2521000 2464400 3572900 3084500 4857800 292790 4899400 3706000 5393500 3268300 2482000 2632100 2399300 3414000 8 8 5 8 8 8 8 8 8 8 8 3084600 4855000 19933 4399200 3599900 5209200 2959100 2072900 2293200 2265000 3301600 2872100 4528500 270680 4532200 3436100 5186300 3014400 2271600 2397800 2204200 3153700 5 5 4 5 5 5 5 5 5 5 5 228100 352850 5758.2 363110 281970 192730 249270 207880 227850 199390 271300 212430 329290 22116 367160 269860 207190 253890 210340 234280 195080 260360 3 3 1 3 3 3 3 3 3 3 3 633680000 622200000 11478000 14625 653 13396 76637;76638;76639;76640;76641;76642;76643;76644;76645;76646;76647 92548;92549;92550;92551;92552;92553;92554;92555 92551 710 8 NMSVIAHVDHGK Unmodified 1306.6452 0.64520425 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 1.41 1 1 5 1 3 5 32.316 32.378 3;4 8.7611E-08 9577 20211116_3439_TMUAki_TMT10x_S_F1 136.3 100.78 7146700 10977000 324770 11104000 8211600 10431000 7397600 5051500 5370900 5495000 8081400 6656500 10243000 879490 11309000 7870900 10547000 7483500 5420800 5648900 5348400 7711900 11 11 8 11 11 11 11 11 11 11 11 5445400 8251300 267570 8240800 6433700 8863900 5543800 3797100 4054600 4162400 6079900 5072000 7699300 687050 8417000 6161000 8877600 5623700 4127200 4261900 4050200 5802400 2 2 1 2 2 2 2 2 2 2 2 1701300 2726100 57197 2863700 1777900 1567200 1853800 1254400 1316400 1332600 2001500 1584500 2544200 192440 2892400 1709900 1669500 1859800 1293500 1387000 1298300 1909500 9 9 7 9 9 9 9 9 9 9 9 634520000 534040000 100480000 14626 653 13396 76648;76649;76650;76651;76652;76653;76654;76655 92556;92557;92558;92559;92560;92561;92562;92563;92564;92565;92566 92558 11 NMTPSPFLR Oxidation (M) 1077.5277 0.52771487 1440 P82663;P82663-3;P82663-2 MRPS25 28S ribosomal protein S25, mitochondrial yes no 0 0 1 0 By MS/MS 7.5 0.5 1 1 2 39.13 39.616 2 0.0038041 11440 20211116_3446_TMUAki_TMT10x_S_F7 82.75 55.122 900390 1640000 6836.9 1541900 851220 779460 759460 1128100 1113100 876290 1259300 838320 1529900 69354 1568500 813580 848930 786090 1121900 1122100 866210 1210300 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 900390 1640000 6836.9 1541900 851220 779460 759460 1128100 1113100 876290 1259300 838320 1529900 69354 1568500 813580 848930 786090 1121900 1122100 866210 1210300 3 3 1 3 3 3 3 3 3 3 3 49994000 0 49994000 14627 1440 13397 76656;76657 92567;92568;92569 92567 1948 3 NMVDPKDIDDDLEGEVTEECGK Unmodified 2507.068 0.067964088 3124 Q9UHX1-6;Q9UHX1-5;Q9UHX1-4;Q9UHX1-2;Q9UHX1;Q9UHX1-3 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 0 0 0 1 By MS/MS 1 0 1 1 66.025 65.787 3 2.2403E-17 22501 20211116_3439_TMUAki_TMT10x_S_F1 133.38 121.25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14628 3124 13398 76658 92570 92570 1 NMVGAGEVDEDLEVETKEECEK Oxidation (M) 2525.0785 0.078528774 2495 Q96I25 RBM17 Splicing factor 45 yes yes 0 0 1 1 By matching By MS/MS 1 0 2 1 1 51.805 51.664 4 2.8818E-35 16798 20211116_3439_TMUAki_TMT10x_S_F1 189.79 175.48 1868100 3550200 19320 3436100 1646900 1799800 1328500 3403800 3373000 2990000 3417800 1739600 3312300 169790 3489000 1572300 1970500 1427500 3367400 3343600 2937300 3295600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1868100 3550200 19320 3436100 1646900 1799800 1328500 3403800 3373000 2990000 3417800 1739600 3312300 169790 3489000 1572300 1970500 1427500 3367400 3343600 2937300 3295600 2 2 2 2 2 2 2 2 2 2 2 887730000 706190000 181540000 14629 2495 13399 76659;76660 92571;92572 92572 2778 2 NMVPQQALVIR Unmodified 1267.7071 0.70707622 497 P05023;P05023-3;P05023-4;P05023-2;P13637;P13637-2;P13637-3;P50993;Q13733 ATP1A1;ATP1A3;ATP1A2;ATP1A4 Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 51.954 51.813 2 2.9693E-07 16799 20211116_3439_TMUAki_TMT10x_S_F1 115.86 88.544 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14630 497 13400 76661;76662 92573;92574 92574 2 NMVPQQALVIR Oxidation (M) 1283.702 0.70199085 497 P05023;P05023-3;P05023-4;P05023-2;P13637;P13637-2;P13637-3;P50993;Q13733 ATP1A1;ATP1A3;ATP1A2;ATP1A4 Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4 yes no 0 0 1 0 By MS/MS By MS/MS 7.17 0.687 1 3 2 2 4 42.448 42.787 2;3 8.6305E-09 12746 20211116_3446_TMUAki_TMT10x_S_F7 158.87 134 3871500 6720800 13859 7099300 7563900 7380700 4647600 6571900 6638200 5232000 6353800 3604600 6272600 358740 7219900 7178400 7483400 4928400 6682600 6656100 5165000 6138100 7 7 3 7 7 7 7 7 7 7 7 2338100 4128100 5571.1 4284300 6039600 5933100 3283400 3940300 4055300 3107100 3760500 2176900 3852500 237750 4384300 5721300 5897700 3498500 4081900 4081400 3068900 3636700 3 3 1 3 3 3 3 3 3 3 3 1533400 2592700 8287.9 2815000 1524200 1447600 1364200 2631600 2582900 2124900 2593300 1427700 2420100 120990 2835600 1457100 1585700 1429900 2600700 2574700 2096100 2501300 4 4 2 4 4 4 4 4 4 4 4 757290000 451920000 305370000 14631 497 13400 76663;76664;76665;76666;76667;76668 92575;92576;92577;92578;92579;92580;92581 92579 399 7 NNAASEGVLASFFNSLLSK Unmodified 1967.9953 0.99525556 202 O43237;O43237-2 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 yes no 0 0 0 0 By MS/MS By MS/MS 4 0 3 1 2 82.242 82.242 3 2.9164E-09 27606 20211116_3431_TMUAki_TMT10x_P_F4 119.37 100.04 3710300 6371800 65811 6370800 4155500 5762400 4210000 3409400 3324800 4035500 4608300 3455000 5945600 361120 6490200 3989000 5855000 4240100 3603900 3466700 3915500 4405700 4 4 2 4 4 4 4 4 4 4 4 2289400 3933200 33280 3784500 2296100 4053400 2493500 2000100 1976500 2202500 2753700 2131900 3669500 217660 3875300 2208400 4066600 2502900 2143300 2060900 2142800 2632300 2 2 1 2 2 2 2 2 2 2 2 1420900 2438700 32531 2586300 1859400 1709000 1716500 1409200 1348300 1833000 1854600 1323100 2276100 143460 2614900 1780600 1788400 1737200 1460600 1405700 1772700 1773400 2 2 1 2 2 2 2 2 2 2 2 424810000 196720000 228090000 14632 202 13401 76669;76670;76671 92582;92583;92584;92585;92586 92582 5 NNALNPEEMRR Oxidation (M) 1358.6361 0.63609612 282 O60684 KPNA6 Importin subunit alpha-7 yes yes 0 0 1 1 By MS/MS 3 0 1 1 27.011 26.718 3 0.037451 7794 20211116_3441_TMUAki_TMT10x_S_F3 44.612 30.454 34485 62532 41.372 48569 53365 30957 38874 32494 40786 37863 40079 32109 58297 3162 50272 50807 32658 40248 33121 41384 36758 38685 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34485 62532 41.372 48569 53365 30957 38874 32494 40786 37863 40079 32109 58297 3162 50272 50807 32658 40248 33121 41384 36758 38685 1 1 1 1 1 1 1 1 1 1 1 2254000 0 2254000 14633 282 13402 76672 92587 92587 218 1 NNALNQVVLWDK Unmodified 1412.7412 0.74121312 1285 P61009 SPCS3 Signal peptidase complex subunit 3 yes yes 0 0 0 0 By MS/MS 7 0 1 1 65.573 66.182 2 1.3104E-11 21928 20211116_3435_TMUAki_TMT10x_P_F7 130.41 104.29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14634 1285 13403 76673 92588 92588 1 NNAYLAQSPQLYK Unmodified 1508.7623 0.7623425 678 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 8 0 4 1 3 51.623 51.618 3 3.4618E-09 14786 20211116_3436_TMUAki_TMT10x_P_F8 124.12 102.87 9449800 16224000 86625 18035000 19182000 23769000 13990000 17466000 17483000 14036000 15077000 8799400 15146000 1000500 18356000 18267000 23719000 14570000 17974000 17547000 13849000 14619000 4 4 4 4 4 4 4 4 4 4 4 7385000 12518000 47693 14359000 17078000 21498000 12041000 12654000 13142000 10411000 11680000 6876500 11688000 792470 14626000 16252000 21262000 12511000 13245000 13270000 10260000 11313000 3 3 3 3 3 3 3 3 3 3 3 2064900 3705900 38932 3675500 2103500 2271000 1948600 4812100 4340600 3624700 3397100 1922900 3457900 208020 3730800 2015400 2457300 2058700 4728800 4277600 3589000 3306300 1 1 1 1 1 1 1 1 1 1 1 684780000 429300000 255490000 14635 678 13404 76674;76675;76676;76677 92589;92590;92591;92592;92593;92594 92589 6 NNELLKNIQDVQSQISK Unmodified 1970.0433 0.043268383 2324 Q8WXH0;Q8WXH0-2 SYNE2 Nesprin-2 yes no 0 0 0 1 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 56.558 56.656 4 0.027402 17612 20211116_3442_TMUAki_TMT10x_S_F4 43.297 27.355 25971000 42520000 376510 43163000 31601000 44858000 30295000 30437000 28018000 28683000 33179000 24184000 39678000 2547100 44014000 30288000 45270000 30728000 31621000 28786000 28086000 31846000 8 8 6 8 8 8 8 8 8 8 8 17943000 28349000 241500 29509000 23740000 37170000 22382000 20255000 18629000 19163000 23006000 16709000 26457000 1793900 30137000 22744000 37014000 22658000 21415000 19271000 18761000 22058000 5 5 5 5 5 5 5 5 5 5 5 8027300 14171000 135020 13654000 7860500 7687500 7913600 10181000 9388600 9519700 10172000 7475000 13221000 753250 13877000 7544200 8255600 8070000 10206000 9514500 9324700 9788400 3 3 1 3 3 3 3 3 3 3 3 7150100000 3302500000 3847600000 14636 2324 13405 76678;76679;76680;76681;76682;76683 92595;92596;92597;92598 92596 4 NNFAVGYR Unmodified 939.45626 0.45626449 1034 P45880;P45880-2;P45880-1 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 34.97 35.289 2 0.092137 7369 20211116_3434_TMUAki_TMT10x_P_F6 49.933 17.805 5200900 8053600 0 7611100 6395000 6837700 4940600 3850000 3926700 4003700 5312200 4840500 7513200 191980 7784300 6078700 6946300 5056200 4069800 4088300 3903800 5081600 4 4 0 4 4 4 4 4 4 4 4 3698900 5816900 0 5537500 4914600 5816900 3608500 2754400 2833300 2885100 3846600 3442700 5426800 155470 5673000 4668600 5839800 3704500 2959000 2952200 2812300 3679300 3 3 0 3 3 3 3 3 3 3 3 1501900 2236600 0 2073600 1480400 1020800 1332200 1095600 1093500 1118600 1465600 1397700 2086400 36507 2111200 1410100 1106500 1351600 1110800 1136100 1091500 1402300 1 1 0 1 1 1 1 1 1 1 1 275450000 241490000 33959000 14637 1034 13406 76684;76685;76686;76687 92599 92599 1 NNFEGEVTKENLLDFIK Unmodified 2009.0106 0.010571271 533 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 1 By matching By MS/MS 5.33 0.471 2 1 1 2 77.265 77.264 3 4.6064E-08 25011 20211116_3445_TMUAki_TMT10x_S_F6 117.26 102.79 5384300 11665000 0 6824200 9453600 10118000 9534000 8964600 7085900 8014300 9746700 5013100 10866000 474230 7352900 9064700 10079000 9590700 9144300 7410300 7866400 9320000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5384300 11665000 0 6824200 9453600 10118000 9534000 8964600 7085900 8014300 9746700 5013100 10866000 474230 7352900 9064700 10079000 9590700 9144300 7410300 7866400 9320000 1 1 0 1 1 1 1 1 1 1 1 1927200000 674000000 1253200000 14638 533 13407 76688;76689;76690 92600 92600 1 NNGAGYFLEHLAFK Unmodified 1579.7783 0.77832691 891 P31930 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 0 0 0 0 By MS/MS By matching 8 0 2 1 1 69.765 69.722 3 0.0093008 22234 20211116_3436_TMUAki_TMT10x_P_F8 55.841 41.002 12769000 21666000 133070 19939000 14368000 23884000 14649000 13314000 12070000 11765000 16480000 11890000 20210000 1104500 20522000 13785000 23850000 14764000 14024000 12549000 11554000 15761000 2 2 1 2 2 2 2 2 2 2 2 12769000 21666000 133070 19939000 14368000 23884000 14649000 13314000 12070000 11765000 16480000 11890000 20210000 1104500 20522000 13785000 23850000 14764000 14024000 12549000 11554000 15761000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1629400000 889780000 739650000 14639 891 13408 76691;76692 92601;92602 92602 2 NNIPYFETSAK Unmodified 1282.6194 0.61936665 1151 P51149 RAB7A Ras-related protein Rab-7a yes yes 0 0 0 0 By MS/MS By MS/MS 5.6 0.49 2 3 2 3 52.458 52.611 2;3 1.1131E-14 14457 20211116_3434_TMUAki_TMT10x_P_F6 164.43 135.34 1350500 2367300 12081 2630500 1356500 1176800 1098300 2464200 2410200 1784700 2342600 1257600 2209900 123310 2643300 1294900 1317400 1168100 2420100 2392100 1771100 2261900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1350500 2367300 12081 2630500 1356500 1176800 1098300 2464200 2410200 1784700 2342600 1257600 2209900 123310 2643300 1294900 1317400 1168100 2420100 2392100 1771100 2261900 1 1 1 1 1 1 1 1 1 1 1 238700000 0 238700000 14640 1151 13409 76693;76694;76695;76696;76697 92603;92604;92605;92606 92604 4 NNISSGHVPHGPLTRPSEQLDYLSR Unmodified 2773.3896 0.38958849 445 O95793;O95793-2;O95793-3 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes no 0 0 0 1 By MS/MS 2 0 1 1 40.9 40.956 5 0.0085743 10537 20211116_3440_TMUAki_TMT10x_S_F2 44.264 29.955 410890 744470 8313.8 859890 402050 382770 329580 587800 639880 593510 644730 382640 695100 41690 861940 384190 423970 347700 587460 637560 579410 621790 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 410890 744470 8313.8 859890 402050 382770 329580 587800 639880 593510 644730 382640 695100 41690 861940 384190 423970 347700 587460 637560 579410 621790 1 1 1 1 1 1 1 1 1 1 1 68122000 0 68122000 14641 445 13410 76698 92607 92607 1 NNKNEFVSLINCSSQPPLISHGIGK Unmodified 2752.3966 0.39664771 445 O95793;O95793-2;O95793-3 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes no 0 0 0 1 By matching By MS/MS 3 0 2 1 1 64.592 64.224 4 1.6571E-29 22908 20211116_3441_TMUAki_TMT10x_S_F3 170.28 149.85 4787800 9259500 65969 8264300 5083300 4741500 5232200 4422400 3855900 4387200 6362400 4458400 8636400 462560 8448600 4881800 5040400 5256900 4511500 4071900 4286200 6060000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4787800 9259500 65969 8264300 5083300 4741500 5232200 4422400 3855900 4387200 6362400 4458400 8636400 462560 8448600 4881800 5040400 5256900 4511500 4071900 4286200 6060000 2 2 2 2 2 2 2 2 2 2 2 907590000 427590000 480000000 14642 445 13411 76699;76700 92608;92609 92608 2 NNLAGAEELFAR Unmodified 1303.6521 0.65206377 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.78 0.916 1 2 4 2 5 4 58.477 58.397 2;3 3.2961E-48 18225 20211116_3442_TMUAki_TMT10x_S_F4 300.62 232.41 107440000 191030000 1401000 185930000 161880000 221710000 149420000 158040000 146910000 143550000 167960000 100050000 178230000 10289000 190570000 154950000 222230000 152140000 163460000 150310000 140790000 161370000 14 14 7 14 14 14 14 14 14 14 14 74093000 132150000 1109300 128200000 123280000 188270000 118280000 107250000 101090000 99455000 116520000 68991000 123290000 7257500 131960000 118110000 186270000 119710000 112900000 104140000 97454000 111930000 8 8 3 8 8 8 8 8 8 8 8 33350000 58883000 291640 57733000 38606000 33446000 31140000 50788000 45824000 44092000 51441000 31054000 54940000 3031200 58615000 36842000 35960000 32431000 50562000 46174000 43339000 49449000 6 6 4 6 6 6 6 6 6 6 6 13525000000 7450500000 6074600000 14643 1471 13412 76701;76702;76703;76704;76705;76706;76707;76708;76709 92610;92611;92612;92613;92614;92615;92616;92617;92618;92619;92620;92621;92622;92623;92624 92620 15 NNLRDWLR Unmodified 1085.573 0.57302558 931 P35268;Q6P5R6 RPL22;RPL22L1 60S ribosomal protein L22;60S ribosomal protein L22-like 1 yes no 0 0 0 1 By MS/MS By MS/MS 2.8 2.64 2 2 1 2 3 45.245 45.114 3 0.0010727 12048 20211116_3428_TMUAki_TMT10x_P_F1 114.64 41.996 9062200 14141000 754.03 16440000 19602000 13542000 10686000 7791600 7872900 7658900 12516000 8437200 13203000 820470 16566000 18566000 13845000 11218000 8208100 8297200 7485500 11930000 5 5 1 5 5 5 5 5 5 5 5 5498100 8428400 754.03 9979200 16173000 10830000 7527300 4609800 4638400 4701700 7518600 5118900 7870300 554530 10084000 15287000 10841000 7997900 5003600 4947400 4588100 7163700 3 3 1 3 3 3 3 3 3 3 3 3564100 5712200 0 6461100 3428900 2711700 3158500 3181700 3234500 2957200 4997800 3318300 5332900 265940 6482500 3279200 3004300 3220300 3204500 3349800 2897400 4766600 2 2 0 2 2 2 2 2 2 2 2 598350000 452980000 145370000 14644 931 13413 76710;76711;76712;76713;76714 92625;92626;92627;92628;92629;92630 92626 6 NNLSYDCIGR Unmodified 1210.5401 0.54007047 1483 Q01581 HMGCS1 Hydroxymethylglutaryl-CoA synthase, cytoplasmic yes yes 0 0 0 0 By MS/MS 4 0 1 1 37.255 37.395 2 3.6215E-06 9762 20211116_3442_TMUAki_TMT10x_S_F4 145.9 117.51 139050 266000 148.12 321130 130520 120880 135340 247880 324750 154320 294390 129470 248420 11547 320720 125280 138350 142890 242820 321010 154570 284930 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 139050 266000 148.12 321130 130520 120880 135340 247880 324750 154320 294390 129470 248420 11547 320720 125280 138350 142890 242820 321010 154570 284930 1 1 1 1 1 1 1 1 1 1 1 9169500 0 9169500 14645 1483 13414 76715 92631 92631 1 NNLVIDTPR Unmodified 1040.5615 0.56145784 3062;2868 Q9P2D1;Q9HCK8;Q9HCK8-2 CHD7;CHD8 Chromodomain-helicase-DNA-binding protein 7;Chromodomain-helicase-DNA-binding protein 8 no no 0 0 0 0 By MS/MS 4 0 1 1 38.259 38.416 2 0.00092697 10119 20211116_3442_TMUAki_TMT10x_S_F4 107.9 71.717 212870 331280 6107.2 401840 205010 182300 223360 203320 226070 174520 316390 198250 309380 23230 401680 197400 199730 225680 204800 233080 171630 302410 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 212870 331280 6107.2 401840 205010 182300 223360 203320 226070 174520 316390 198250 309380 23230 401680 197400 199730 225680 204800 233080 171630 302410 1 1 1 1 1 1 1 1 1 1 1 7366800 0 7366800 14646 3062;2868 13415 76716 92632 92632 1 NNNDNIFLSPLSISTAFAMTK Unmodified 2297.1362 0.13618249 46 CON__P41361 yes yes 0 0 0 0 By MS/MS 3 0 1 1 81.105 81.068 3 7.6106E-05 29673 20211116_3441_TMUAki_TMT10x_S_F3 65.207 52.317 + 1964200 4205500 1533.3 3294200 2330100 2272700 2148600 1322800 1488600 1787500 2343600 1828700 3920700 155930 3409700 2228800 2357000 2168400 1406800 1573600 1726600 2234300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1964200 4205500 1533.3 3294200 2330100 2272700 2148600 1322800 1488600 1787500 2343600 1828700 3920700 155930 3409700 2228800 2357000 2168400 1406800 1573600 1726600 2234300 2 2 1 2 2 2 2 2 2 2 2 213980000 0 213980000 14647 46 13416 76717 92633;92634 92633 2 NNNIDAAIENIENMLTSENK Unmodified 2246.0485 0.048489695 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 2.75 0.829 2 1 1 1 3 81.503 81.486 3 6.0195E-09 29797 20211116_3441_TMUAki_TMT10x_S_F3 104 93.339 5832800 9014300 86183 9270400 5393000 5901300 6499700 3388500 3556700 4126200 6015700 5431400 8412200 539580 9388900 5203000 6163200 6443900 3594100 3834400 3999400 5727000 4 4 3 4 4 4 4 4 4 4 4 2152900 3203700 0 3209600 1722100 2227400 1939500 1156800 1145800 1415200 2091000 2004400 2989400 154300 3259200 1655500 2305600 1931400 1237900 1233900 1371500 1987800 1 1 0 1 1 1 1 1 1 1 1 3680000 5810600 86183 6060900 3670900 3674000 4560200 2231700 2410900 2710900 3924700 3427100 5422800 385290 6129700 3547400 3857600 4512600 2356200 2600400 2627900 3739200 3 3 3 3 3 3 3 3 3 3 3 784680000 437020000 347660000 14648 1018 13417 76718;76719;76720;76721 92635;92636;92637;92638;92639 92637 5 NNPAIVIIGNNGQIHYDHQNDGASQALASCQR Unmodified 3474.6447 0.64471034 1090 P49257 LMAN1 Protein ERGIC-53 yes yes 0 0 0 0 By matching By MS/MS 6.33 0.471 2 1 1 2 50.121 50.366 4 4.1756E-11 16062 20211116_3446_TMUAki_TMT10x_S_F7 99.446 99.413 308310 567210 9462.6 539170 289410 255110 237810 429770 495280 416060 414350 287140 529160 34115 547780 276770 281330 251890 427730 489730 406910 402210 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 308310 567210 9462.6 539170 289410 255110 237810 429770 495280 416060 414350 287140 529160 34115 547780 276770 281330 251890 427730 489730 406910 402210 1 1 1 1 1 1 1 1 1 1 1 791370000 115340000 676020000 14649 1090 13418 76722;76723;76724 92640 92640 1 NNQFQALLQYADPVSAQHAK Unmodified 2242.1131 0.11307928 818 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.47 3.05 4 1 4 6 7 8 67.43 67.524 3;4 1.5521E-32 21908 20211116_3436_TMUAki_TMT10x_P_F8 193.41 178.48 153530000 265430000 5191100 264780000 184400000 230150000 196280000 149680000 135470000 165210000 195950000 142980000 247670000 16689000 269650000 177340000 234790000 196590000 156710000 142620000 160710000 187150000 23 23 14 23 23 23 23 23 23 23 23 59036000 97943000 801680 98987000 64247000 122220000 75284000 54758000 49090000 61581000 70653000 54969000 91395000 5138000 101260000 61892000 121560000 74976000 59283000 51852000 59862000 67489000 10 10 6 10 10 10 10 10 10 10 10 94496000 167490000 4389400 165790000 120150000 107940000 121000000 94918000 86379000 103630000 125300000 88012000 156280000 11551000 168390000 115450000 113230000 121620000 97424000 90771000 100850000 119670000 13 13 8 13 13 13 13 13 13 13 13 36600000000 20381000000 16219000000 14650 818 13419 76725;76726;76727;76728;76729;76730;76731;76732;76733;76734;76735;76736;76737;76738;76739 92641;92642;92643;92644;92645;92646;92647;92648;92649;92650;92651;92652;92653;92654;92655;92656;92657;92658;92659;92660 92647 20 NNQGQLIAEPFYHLPSK Unmodified 1954.9901 0.9901106 2103 Q86U86;Q86U86-8;Q86U86-5;Q86U86-4;Q86U86-7;Q86U86-3;Q86U86-9;Q86U86-2;Q86U86-6 PBRM1 Protein polybromo-1 yes no 0 0 0 0 By MS/MS 7 0 1 1 58.204 58.936 3 1.4522E-06 18919 20211116_3435_TMUAki_TMT10x_P_F7 90.754 73.265 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14651 2103 13420 76740 92661 92661 1 NNQGTVNWSVDDIVK Unmodified 1687.8166 0.81656291 1172 P52292 KPNA2 Importin subunit alpha-1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 62.714 62.786 2;3 9.0406E-33 19111 20211116_3445_TMUAki_TMT10x_S_F6 201 166.62 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14652 1172 13421 76741;76742;76743 92662;92663;92664 92664 3 NNRPSEGPLQTR Unmodified 1367.6906 0.69057454 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 1 By MS/MS By MS/MS 4.25 0.829 1 1 2 3 1 25.263 25.167 3 6.6672E-06 4962 20211116_3433_TMUAki_TMT10x_P_F5 107.2 83.961 397460 664100 5043.7 557380 550690 732150 427940 347430 396040 350670 555660 370110 619280 37402 578770 525190 726440 439510 372760 409960 342350 531090 5 5 3 5 5 5 5 5 5 5 5 369610 607850 5043.7 503400 511010 703750 382810 321340 360020 314660 506080 344180 566800 35766 523930 487060 695980 394300 345810 372440 307590 483680 4 4 3 4 4 4 4 4 4 4 4 27855 56253 0 53977 39679 28396 45124 26095 36021 36008 49580 25929 52481 1635.5 54843 38128 30454 45204 26944 37525 34758 47408 1 1 0 1 1 1 1 1 1 1 1 25616000 23544000 2072100 14653 1471 13422 76744;76745;76746;76747 92665;92666;92667;92668 92667 4 NNRQPYAVSELAGHQTSAESWGTGR Unmodified 2715.275 0.27495267 953 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 38.844 39.066 4 1.8844E-30 10841 20211116_3435_TMUAki_TMT10x_P_F7 178.79 166.36 1467800 1328600 0 1836300 2055100 2036500 1094900 930930 1196600 838620 1912100 1366500 1241600 111670 1840500 1945200 2037500 1164000 999540 1238300 822850 1822400 3 3 0 3 3 3 3 3 3 3 3 1467800 1328600 0 1836300 2055100 2036500 1094900 930930 1196600 838620 1912100 1366500 1241600 111670 1840500 1945200 2037500 1164000 999540 1238300 822850 1822400 3 3 0 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 124320000 124320000 0 14654 953 13423 76748;76749 92669;92670;92671 92671 3 NNSELLNNLGNFINR Unmodified 1730.87 0.86999547 1254 P56192 MARS Methionine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 72.97 72.945 3 5.0662E-05 25379 20211116_3439_TMUAki_TMT10x_S_F1 90.476 69.225 12339000 19525000 750470 21540000 14096000 18634000 18251000 8477800 7570600 8988100 13801000 11494000 18226000 1747000 21789000 13666000 18934000 17965000 9147500 8390300 8757200 13120000 3 3 3 3 3 3 3 3 3 3 3 9534600 15080000 578230 16541000 10957000 16252000 14758000 6587700 5999200 6848800 10116000 8882000 14077000 1349300 16767000 10637000 16357000 14500000 7193500 6632500 6678100 9631000 2 2 2 2 2 2 2 2 2 2 2 2804400 4444500 172240 4999300 3138800 2382200 3493200 1890100 1571400 2139300 3684900 2612400 4149300 397710 5021800 3029000 2577200 3465300 1954000 1757700 2079100 3489300 1 1 1 1 1 1 1 1 1 1 1 1246900000 902060000 344810000 14655 1254 13424 76750;76751;76752 92672;92673;92674 92674 3 NNSFVNEIISR Unmodified 1291.6521 0.65206377 1027 P43246;P43246-2 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 56.438 56.538 2 3.2058E-23 16510 20211116_3445_TMUAki_TMT10x_S_F6 242.97 218.13 18210000 33623000 77684 31716000 21025000 23658000 18754000 24869000 23240000 23585000 26387000 16955000 31367000 1594500 32370000 20106000 24625000 19281000 25186000 23558000 23087000 25358000 4 4 2 4 4 4 4 4 4 4 4 3643500 6628500 0 6256600 5663900 8742900 5648100 4934900 4705900 4684800 5300000 3392300 6183700 314570 6446200 5429400 8667800 5700800 5202200 4849800 4585700 5094400 1 1 0 1 1 1 1 1 1 1 1 14566000 26995000 77684 25460000 15361000 14915000 13106000 19934000 18534000 18900000 21087000 13563000 25183000 1280000 25924000 14676000 15957000 13580000 19984000 18708000 18502000 20263000 3 3 2 3 3 3 3 3 3 3 3 1570900000 666490000 904420000 14656 1027 13425 76753;76754;76755;76756 92675;92676;92677;92678;92679 92679 5 NNSGEEFDCAFR Unmodified 1444.5677 0.56774179 1552 Q08J23;Q08J23-2;Q08J23-3 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 43.125 43.018 2 1.2513E-20 11242 20211116_3428_TMUAki_TMT10x_P_F1 237.53 218.21 4172100 6790400 8184.7 9049100 9407400 8916900 5140400 7821900 7620500 6010900 7480900 3883700 6344600 303050 9070000 8905400 9067500 5514000 7953900 7639100 5945200 7220900 6 6 1 6 6 6 6 6 6 6 6 2511100 4117500 8184.7 5459900 8467400 7951000 4443900 4409600 4421300 3508600 4583100 2337600 3847100 224420 5512400 8013400 7866700 4717300 4635100 4504600 3463800 4416200 4 4 1 4 4 4 4 4 4 4 4 1661000 2672900 0 3589200 940020 965950 696470 3412400 3199300 2502300 2897800 1546100 2497500 78632 3557600 892030 1200800 796680 3318800 3134500 2481400 2804700 2 2 0 2 2 2 2 2 2 2 2 402680000 269120000 133570000 14657 1552 13426 76757;76758;76759;76760;76761 92680;92681;92682;92683;92684;92685 92680 6 NNSNDIVNAIMELTM 2 Oxidation (M) 1709.76 0.76003559 59 E9PAV3;Q13765;E9PAV3-2 NACA Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha yes no 0 0 2 0 By MS/MS By MS/MS 4 1.33 3 4 4 4 3 9 9 81.249 81.238 2;3 9.6211E-38 29702 20211116_3441_TMUAki_TMT10x_S_F3 244.16 229.74 29938000 50669000 265370 42840000 32989000 56586000 36126000 42123000 41792000 42193000 43907000 27875000 47250000 2494700 44462000 31715000 56473000 36655000 43559000 42343000 41205000 42290000 29 29 16 29 29 29 29 29 29 29 29 18607000 30817000 200590 26537000 16956000 38373000 19731000 25989000 25890000 25293000 26851000 17325000 28739000 1490400 27551000 16333000 38083000 20060000 27028000 26103000 24731000 25873000 16 16 9 16 16 16 16 16 16 16 16 11331000 19852000 64784 16303000 16034000 18213000 16395000 16134000 15901000 16900000 17056000 10550000 18511000 1004400 16911000 15383000 18389000 16596000 16532000 16239000 16474000 16418000 13 13 7 13 13 13 13 13 13 13 13 13353000000 6341900000 7010700000 14658 59 13427 76762;76763;76764;76765;76766;76767;76768;76769;76770;76771;76772;76773;76774;76775;76776;76777;76778;76779 92686;92687;92688;92689;92690;92691;92692;92693;92694;92695;92696;92697;92698;92699;92700;92701;92702;92703;92704;92705;92706;92707;92708;92709;92710;92711;92712;92713;92714 92704 28;29 29 NNSNDIVNAIMELTM Oxidation (M) 1693.7651 0.76512097 59 E9PAV3;Q13765;E9PAV3-2 NACA Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha yes no 0 0 1 0 By MS/MS By MS/MS 4.75 2.02 1 6 6 6 5 6 6 4 20 20 83.064 83.062 2;3 7.1914E-51 27471 20211116_3445_TMUAki_TMT10x_S_F6 277.1 260.72 33426000 54962000 294310 49009000 37563000 43519000 40751000 23800000 22406000 27321000 40021000 31122000 51263000 2438000 50336000 36087000 44230000 40601000 25298000 24222000 26538000 38061000 41 41 17 41 41 41 41 41 41 41 41 17168000 27676000 222210 25448000 16370000 26539000 19375000 12717000 11890000 14311000 20781000 15985000 25816000 1415000 26135000 15772000 26658000 19264000 13675000 12739000 13911000 19771000 19 19 10 19 19 19 19 19 19 19 19 16258000 27286000 72102 23561000 21193000 16980000 21376000 11083000 10516000 13009000 19240000 15137000 25447000 1023100 24201000 20315000 17571000 21337000 11624000 11483000 12626000 18290000 22 22 7 22 22 22 22 22 22 22 22 8996600000 4917300000 4079300000 14659 59 13427 76780;76781;76782;76783;76784;76785;76786;76787;76788;76789;76790;76791;76792;76793;76794;76795;76796;76797;76798;76799;76800;76801;76802;76803;76804;76805;76806;76807;76808;76809;76810;76811;76812;76813;76814;76815;76816;76817;76818;76819 92715;92716;92717;92718;92719;92720;92721;92722;92723;92724;92725;92726;92727;92728;92729;92730;92731;92732;92733;92734;92735;92736;92737;92738;92739;92740;92741;92742;92743;92744;92745;92746;92747;92748;92749;92750;92751;92752;92753;92754;92755;92756 92752 28;29 42 NNSNDIVNAIMELTM Unmodified 1677.7702 0.77020634 59 E9PAV3;Q13765;E9PAV3-2 NACA Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha yes no 0 0 0 0 By MS/MS By MS/MS 3.86 1.55 2 1 2 2 3 4 84.858 84.856 2 1.0733E-19 29047 20211116_3442_TMUAki_TMT10x_S_F4 176.95 162.27 1697600 2834800 4371 2657100 1993700 2189200 2057800 1551600 1539500 1673000 2166600 1580700 2644500 143660 2716200 1913200 2244700 2067900 1613400 1611100 1628900 2070600 6 6 3 6 6 6 6 6 6 6 6 635730 1008400 1111.1 1012300 609230 1005200 704330 502560 517420 568140 775740 591910 940990 49732 1032400 586380 1013200 703680 538300 543730 552170 740330 2 2 1 2 2 2 2 2 2 2 2 1061900 1826400 3259.9 1644700 1384500 1184000 1353400 1049000 1022000 1104800 1390900 988760 1703600 93933 1683800 1326800 1231600 1364200 1075100 1067300 1076700 1330300 4 4 2 4 4 4 4 4 4 4 4 260300000 167360000 92942000 14660 59 13427 76820;76821;76822;76823;76824;76825;76826 92757;92758;92759;92760;92761;92762 92761 6 NNTQVLINCR Unmodified 1230.6139 0.61390412 1354 P62316;P62316-2 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 33.916 34.094 2 6.5977E-11 7167 20211116_3444_TMUAki_TMT10x_S_F5 206.23 177.83 151660 256080 2299.7 276830 144740 125790 143760 180200 207450 148350 242400 141230 239020 14620 278690 138900 138690 147850 179510 209500 146200 232750 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 151660 256080 2299.7 276830 144740 125790 143760 180200 207450 148350 242400 141230 239020 14620 278690 138900 138690 147850 179510 209500 146200 232750 1 1 1 1 1 1 1 1 1 1 1 15746000 0 15746000 14661 1354 13428 76827;76828 92763;92764 92764 2 NNTVGLIQLNRPK Unmodified 1465.8365 0.83651049 865 P30084 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 44.438 44.288 3 3.1721E-19 14805 20211116_3441_TMUAki_TMT10x_S_F3 188.13 156.12 10823000 17800000 179600 22029000 13521000 10764000 9230000 7668000 9370200 6833600 13118000 10078000 16625000 1083100 22006000 12867000 11591000 9591100 7927500 9659400 6708500 12539000 5 5 3 5 5 5 5 5 5 5 5 4021900 5989300 158040 7676500 7906700 5794900 3959800 2737900 3515700 2444600 4483800 3746000 5594900 535150 7684000 7491700 5950800 4209300 2929200 3630400 2399600 4295400 2 2 2 2 2 2 2 2 2 2 2 6801000 11811000 21556 14352000 5614500 4968900 5270100 4930100 5854500 4389100 8634400 6332400 11030000 547970 14322000 5374800 5639900 5381800 4998300 6029000 4308900 8243200 3 3 1 3 3 3 3 3 3 3 3 842740000 484590000 358150000 14662 865 13429 76829;76830;76831;76832 92765;92766;92767;92768;92769 92769 5 NNVVINYK Unmodified 962.51853 0.5185304 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 By MS/MS 7 0 1 1 40.837 41.44 2 0.00046846 12313 20211116_3446_TMUAki_TMT10x_S_F7 157.52 107.7 440080 725620 0 686160 436980 407160 484210 489610 496500 445110 622230 409690 676940 27570 698610 419610 433850 489060 492310 509030 436550 596350 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 440080 725620 0 686160 436980 407160 484210 489610 496500 445110 622230 409690 676940 27570 698610 419610 433850 489060 492310 509030 436550 596350 1 1 0 1 1 1 1 1 1 1 1 27152000 0 27152000 14663 1997 13430 76833 92770 92770 1 NNWEVSALSR Unmodified 1174.5731 0.57308516 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS 5 0 1 1 47.214 47.372 2 0.011733 13615 20211116_3433_TMUAki_TMT10x_P_F5 64.103 37.719 2589000 4248000 0 5218100 7692500 7007600 4375800 3552700 3767400 3105200 4315400 2410600 3967500 274150 5281500 7291800 6950900 4593200 3773100 3878700 3051100 4145900 1 1 0 1 1 1 1 1 1 1 1 2589000 4248000 0 5218100 7692500 7007600 4375800 3552700 3767400 3105200 4315400 2410600 3967500 274150 5281500 7291800 6950900 4593200 3773100 3878700 3051100 4145900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 113070000 113070000 0 14664 1433 13431 76834 92771 92771 1 NNYSEDLELASLLIK Unmodified 1720.8883 0.88833087 728 P19174-2;P19174 PLCG1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 yes no 0 0 0 0 By MS/MS By MS/MS 4.71 1.67 1 1 1 1 2 1 3 4 80.013 80.007 3 3.1395E-20 26714 20211116_3431_TMUAki_TMT10x_P_F4 148.57 128.99 8103400 14556000 60756 12748000 9836300 11981000 10314000 8153300 7669400 8669100 10380000 7545100 13575000 696670 13121000 9443500 12167000 10355000 8498300 8014200 8445400 9929400 6 6 2 6 6 6 6 6 6 6 6 3946500 6845200 60756 5905900 4116400 7039100 4698900 4159500 3908600 4508500 5182600 3674800 6383800 358560 6108200 3963500 7036300 4711300 4384900 4056100 4388800 4960100 3 3 2 3 3 3 3 3 3 3 3 4156900 7710500 0 6841700 5719900 4942200 5615000 3993700 3760800 4160600 5197500 3870200 7191500 338110 7012600 5480000 5130600 5643600 4113400 3958100 4056600 4969400 3 3 0 3 3 3 3 3 3 3 3 2357300000 1210600000 1146700000 14665 728 13432 76835;76836;76837;76838;76839;76840;76841 92772;92773;92774;92775;92776;92777;92778 92774 7 NPADLPK Unmodified 753.4021 0.40210366 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 4 1.15 1 1 1 3 3 3 36.873 36.811 2;3 0.042366 9498 20211116_3433_TMUAki_TMT10x_P_F5 73.26 34.468 7433100 12650000 54924 11873000 10981000 11268000 8836400 6455700 8393800 5995400 9545000 6921200 11801000 702980 12159000 10477000 11408000 9061600 6792700 8599400 5874400 9172100 4 4 1 4 4 4 4 4 4 4 4 5357500 9018900 54924 8456200 8733100 9633900 6571200 4120400 5577900 4096100 6537300 4988700 8413500 538580 8684100 8322400 9617900 6747800 4466900 5752100 4001400 6276600 2 2 1 2 2 2 2 2 2 2 2 2075600 3631300 0 3417000 2247500 1633600 2265200 2335300 2815800 1899300 3007800 1932500 3387600 164400 3474400 2154800 1790000 2313800 2325900 2847300 1872900 2895500 2 2 0 2 2 2 2 2 2 2 2 408980000 304890000 104090000 14666 653 13433 76842;76843;76844;76845;76846;76847 92779;92780;92781;92782;92783 92780 5 NPAPPIDAVEQILPTLVR Unmodified 1942.0888 0.088762013 1172 P52292 KPNA2 Importin subunit alpha-1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.94 1.06 2 4 4 7 11 6 76.227 76.243 2;3 1.4951E-70 28323 20211116_3446_TMUAki_TMT10x_S_F7 289.88 268.51 33015000 51279000 238090 54485000 27619000 35058000 32163000 17447000 19414000 21803000 32790000 30738000 47861000 2436100 55067000 26582000 36517000 31992000 18758000 20783000 21115000 31217000 16 16 7 16 16 16 16 16 16 16 16 20155000 31192000 197520 33021000 15614000 25639000 18554000 11179000 12477000 14405000 20577000 18766000 29112000 1514900 33447000 15039000 26250000 18478000 12193000 13247000 13936000 19599000 10 10 5 10 10 10 10 10 10 10 10 12859000 20088000 40566 21464000 12005000 9418100 13609000 6268000 6936500 7398700 12213000 11972000 18749000 921260 21620000 11543000 10267000 13514000 6565700 7535900 7179400 11618000 6 6 2 6 6 6 6 6 6 6 6 16613000000 6478600000 10135000000 14667 1172 13434 76848;76849;76850;76851;76852;76853;76854;76855;76856;76857;76858;76859;76860;76861;76862;76863;76864 92784;92785;92786;92787;92788;92789;92790;92791;92792;92793;92794;92795;92796;92797;92798;92799;92800;92801;92802;92803 92801 20 NPAVLSAASFDGR Unmodified 1303.6521 0.65206377 401 O94979;O94979-9;O94979-6;O94979-3;O94979-10;O94979-4;O94979-2;O94979-8;O94979-7;O94979-5 SEC31A Protein transport protein Sec31A yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 50.701 50.822 2 3.5145E-25 14162 20211116_3445_TMUAki_TMT10x_S_F6 225.55 181.74 5648600 9847000 20926 10054000 10855000 13894000 7627000 11507000 11509000 9628000 9850700 5259500 9189100 554590 10299000 10328000 13863000 8025300 11764000 11480000 9480600 9553900 3 3 2 3 3 3 3 3 3 3 3 3651900 6472200 20926 6490100 8984500 12175000 6007100 8127700 8239600 6657000 6589600 3400400 6039300 396950 6704700 8541100 11962000 6318100 8423900 8226100 6562100 6407800 2 2 2 2 2 2 2 2 2 2 2 1996700 3374800 0 3563800 1870300 1718300 1619900 3379300 3269500 2971100 3261100 1859100 3149800 157640 3594700 1786700 1901700 1707300 3339800 3253700 2918500 3146100 1 1 0 1 1 1 1 1 1 1 1 637210000 337480000 299730000 14668 401 13435 76865;76866;76867 92804;92805;92806;92807 92806 4 NPDDITNEEYGEFYK Unmodified 1832.7741 0.77408897 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 By MS/MS By MS/MS 3 1.41 4 4 4 4 4 10 10 60.881 60.759 2;3 4.2258E-72 19224 20211116_3442_TMUAki_TMT10x_S_F4 324.41 291.91 271450000 456790000 1331000 526940000 312300000 386480000 259500000 389170000 376730000 352380000 380400000 252730000 426500000 21387000 530510000 298010000 402440000 269610000 394440000 378250000 345670000 366840000 32 32 8 32 32 32 32 32 32 32 32 106270000 174520000 220000 195500000 198400000 270720000 163040000 149670000 151780000 139180000 144330000 98940000 162920000 8992400 199080000 189280000 268430000 166880000 157970000 154640000 136370000 139460000 15 15 3 15 15 15 15 15 15 15 15 165180000 282270000 1111000 331440000 113900000 115760000 96463000 239500000 224940000 213200000 236070000 153790000 263570000 12394000 331420000 108730000 134010000 102740000 236480000 223610000 209300000 227390000 17 17 5 17 17 17 17 17 17 17 17 78133000000 46759000000 31374000000 14669 544 13436 76868;76869;76870;76871;76872;76873;76874;76875;76876;76877;76878;76879;76880;76881;76882;76883;76884;76885;76886;76887 92808;92809;92810;92811;92812;92813;92814;92815;92816;92817;92818;92819;92820;92821;92822;92823;92824;92825;92826;92827;92828;92829;92830;92831;92832;92833;92834;92835;92836;92837;92838;92839 92835 32 NPDDITQEEYGEFYK Unmodified 1846.7897 0.78973904 553 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 0 By MS/MS By MS/MS 2.97 1.59 7 6 5 5 4 2 13 16 66.79 66.684 2;3;4 6.085E-100 20758 20211116_3439_TMUAki_TMT10x_S_F1 365.11 314.83 247190000 423210000 1741300 440900000 267830000 359410000 213880000 309190000 303150000 282930000 317010000 230160000 394970000 20316000 447330000 255460000 370040000 222530000 316110000 304990000 277400000 305380000 38 38 19 38 38 38 38 38 38 38 38 105160000 176620000 492440 182220000 158110000 246720000 118240000 128570000 127940000 121130000 131770000 97912000 164830000 8794300 186470000 150590000 244710000 122320000 136460000 129870000 118600000 127000000 18 18 7 18 18 18 18 18 18 18 18 142030000 246590000 1248800 258680000 109720000 112690000 95641000 180620000 175210000 161800000 185240000 132250000 230140000 11522000 260860000 104860000 125330000 100210000 179660000 175120000 158800000 178380000 20 20 12 20 20 20 20 20 20 20 20 227950000000 133760000000 94190000000 14670 553 13437 76888;76889;76890;76891;76892;76893;76894;76895;76896;76897;76898;76899;76900;76901;76902;76903;76904;76905;76906;76907;76908;76909;76910;76911;76912;76913;76914;76915;76916 92840;92841;92842;92843;92844;92845;92846;92847;92848;92849;92850;92851;92852;92853;92854;92855;92856;92857;92858;92859;92860;92861;92862;92863;92864;92865;92866;92867;92868;92869;92870;92871;92872;92873;92874;92875;92876;92877;92878;92879;92880 92860 41 NPDGTMNLMNWECAIPGKK 2 Oxidation (M) 2206.9809 0.98094418 1408 P63279 UBE2I SUMO-conjugating enzyme UBC9 yes yes 0 0 2 1 By MS/MS By MS/MS 7 0 2 1 1 57.525 58.048 3;4 8.8152E-05 18543 20211116_3435_TMUAki_TMT10x_P_F7 72.421 66.391 2565900 4873900 27026 5303100 2638400 2574900 2674000 3641300 3533100 3591200 3711100 2389300 4549400 238930 5338900 2532300 2815400 2737100 3646900 3563100 3509400 3574400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2565900 4873900 27026 5303100 2638400 2574900 2674000 3641300 3533100 3591200 3711100 2389300 4549400 238930 5338900 2532300 2815400 2737100 3646900 3563100 3509400 3574400 1 1 1 1 1 1 1 1 1 1 1 511710000 0 511710000 14671 1408 13438 76917;76918 92881;92882 92881 1892;1893 2 NPDTQWITKPVHK Unmodified 1562.8205 0.82052608 1308 P61313 RPL15 60S ribosomal protein L15 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 43.345 43.342 4 4.2735E-09 11370 20211116_3436_TMUAki_TMT10x_P_F8 128.76 116.85 7407600 11931000 143810 15454000 21173000 12740000 10512000 7640800 8247400 7320800 12279000 6898100 11146000 912170 15476000 20040000 13031000 11150000 8016400 8632500 7163000 11720000 7 7 5 7 7 7 7 7 7 7 7 4224900 6801700 101210 8905200 18661000 10558000 7839300 4157700 4681700 4193700 7135800 3934500 6354600 641730 8960900 17627000 10510000 8419800 4551400 4988100 4094300 6807700 4 4 3 4 4 4 4 4 4 4 4 3182700 5129700 42597 6548800 2511600 2181300 2673100 3483100 3565700 3127100 5143400 2963600 4791900 270440 6515300 2413400 2520900 2730600 3465000 3644400 3068700 4912800 3 3 2 3 3 3 3 3 3 3 3 699090000 458630000 240460000 14672 1308 13439 76919;76920;76921;76922 92883;92884;92885;92886;92887;92888;92889 92884 7 NPDVDTSFLPDRDREEEENR Unmodified 2432.084 0.084023579 1705 Q14320;Q9Y247 FAM50A;FAM50B Protein FAM50A;Protein FAM50B yes no 0 0 0 2 By MS/MS 1.5 0.5 1 1 2 40.057 40.023 4 1.335E-08 12069 20211116_3439_TMUAki_TMT10x_S_F1 103.58 87.816 132160 269600 0 289550 126010 108900 113340 199170 193100 182330 229450 123040 251640 9570.1 291280 120420 124110 118100 197440 194240 178760 220220 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 132160 269600 0 289550 126010 108900 113340 199170 193100 182330 229450 123040 251640 9570.1 291280 120420 124110 118100 197440 194240 178760 220220 1 1 0 1 1 1 1 1 1 1 1 33841000 0 33841000 14673 1705 13440 76923;76924 92890 92890 1 NPEGRFPDLTVELNR Unmodified 1755.8904 0.89039656 1183 P52701;P52701-3;P52701-4;P52701-2 MSH6 DNA mismatch repair protein Msh6 yes no 0 0 0 1 By MS/MS By MS/MS 5 0 3 2 1 53.924 54.118 3 2.1197E-14 15191 20211116_3444_TMUAki_TMT10x_S_F5 132.63 103.14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14674 1183 13441 76925;76926;76927 92891;92892;92893 92893 3 NPEHFVVCNR Unmodified 1270.5877 0.58768937 1881 Q2TAY7;Q2TAY7-2 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 32.47 32.455 3 2.9553E-07 7616 20211116_3433_TMUAki_TMT10x_P_F5 157.38 137.05 1313600 1984400 15206 2105200 3029200 2507800 1680000 1424000 1440900 1209000 1843100 1223200 1852100 147010 2145100 2871600 2505600 1767300 1496100 1490600 1189600 1765500 3 3 2 3 3 3 3 3 3 3 3 1313600 1984400 15206 2105200 3029200 2507800 1680000 1424000 1440900 1209000 1843100 1223200 1852100 147010 2145100 2871600 2505600 1767300 1496100 1490600 1189600 1765500 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 229890000 229890000 0 14675 1881 13442 76928;76929 92894;92895;92896 92896 3 NPEILAIAPVLLDALTDPSR Unmodified 2117.1732 0.17321992 2350 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.25 1.48 1 1 1 1 1 3 83.654 83.664 3 3.9496E-07 29754 20211116_3446_TMUAki_TMT10x_S_F7 96.79 90.209 1065700 1800000 6575.6 1541500 1310400 1380900 1285500 1275200 1256800 1326000 1393700 992200 1678600 77539 1588400 1254900 1414300 1304300 1303400 1284700 1293000 1340200 4 4 1 4 4 4 4 4 4 4 4 213550 306980 6575.6 273200 186580 401900 232080 261170 242980 259560 263490 198880 286320 23455 283020 180440 398330 233360 272600 247440 253570 253540 1 1 1 1 1 1 1 1 1 1 1 852190 1493000 0 1268300 1123800 979050 1053400 1014000 1013800 1066500 1130200 793310 1392300 54084 1305400 1074500 1016000 1071000 1030800 1037200 1039400 1086700 3 3 0 3 3 3 3 3 3 3 3 184990000 10397000 174590000 14676 2350 13443 76930;76931;76932;76933 92897;92898;92899;92900 92900 4 NPELPNAAQAQKEEQLKIDEAESLNDEELEEK Unmodified 3650.7435 0.74352371 260 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 0 0 0 2 By MS/MS 1 0 1 1 67.602 67.395 4 5.869E-57 23172 20211116_3439_TMUAki_TMT10x_S_F1 199.8 191.11 5951800 10112000 201240 11142000 5231600 3971200 6720100 2901600 3406900 3501100 6551100 5543300 9439300 670910 11187000 5065900 4463900 6636100 3022100 3722400 3394600 6222300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5951800 10112000 201240 11142000 5231600 3971200 6720100 2901600 3406900 3501100 6551100 5543300 9439300 670910 11187000 5065900 4463900 6636100 3022100 3722400 3394600 6222300 1 1 1 1 1 1 1 1 1 1 1 743590000 0 743590000 14677 260 13444 76934 92901 92901 1 NPELSTQLIDIIHTAAAR Unmodified 1962.0534 0.053439139 3006 Q9NXF1;Q9NXF1-2 TEX10 Testis-expressed sequence 10 protein yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 76.658 76.671 3 1.2835E-08 26389 20211116_3435_TMUAki_TMT10x_P_F7 116.09 82.817 25822000 44201000 62929 38370000 34635000 46606000 32213000 35471000 30761000 32190000 32735000 24041000 41222000 2088800 39679000 33138000 46721000 32757000 36528000 31428000 31574000 31518000 5 5 2 5 5 5 5 5 5 5 5 16323000 28087000 62929 23914000 19508000 35895000 21158000 22270000 19346000 19706000 20405000 15198000 26193000 1418300 24870000 18748000 35522000 21319000 23253000 19798000 19352000 19651000 3 3 2 3 3 3 3 3 3 3 3 9498800 16113000 0 14456000 15127000 10711000 11055000 13201000 11415000 12484000 12330000 8842800 15029000 670490 14809000 14390000 11199000 11438000 13275000 11629000 12222000 11866000 2 2 0 2 2 2 2 2 2 2 2 2680500000 1857000000 823510000 14678 3006 13445 76935;76936;76937 92902;92903;92904;92905;92906 92902 5 NPEPELLVR Unmodified 1065.5819 0.58185894 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 44.904 44.857 2 0.00026748 12137 20211116_3440_TMUAki_TMT10x_S_F2 131.41 99.295 21907000 36335000 143300 45049000 38665000 39262000 24573000 34186000 34780000 27298000 35273000 20397000 33937000 2004700 45255000 36716000 40240000 25979000 34808000 34953000 26945000 34011000 6 6 4 6 6 6 6 6 6 6 6 11170000 17243000 105060 22283000 30990000 30881000 15767000 16565000 17112000 13308000 17167000 10400000 16109000 1207300 22505000 29332000 30607000 16830000 17467000 17352000 13131000 16558000 3 3 2 3 3 3 3 3 3 3 3 10737000 19092000 38240 22765000 7675300 8381200 8806800 17621000 17668000 13991000 18106000 9997100 17829000 797340 22750000 7384600 9633100 9148300 17340000 17602000 13813000 17453000 3 3 2 3 3 3 3 3 3 3 3 1351500000 793940000 557550000 14679 1730 13446 76938;76939;76940;76941;76942;76943 92907;92908;92909;92910 92909 4 NPEQVDLYQFMAK Oxidation (M) 1597.7446 0.74464352 1254 P56192 MARS Methionine--tRNA ligase, cytoplasmic yes yes 0 0 1 0 By MS/MS 6 0 1 1 59.891 59.94 3 0.016962 17522 20211116_3434_TMUAki_TMT10x_P_F6 56.482 29.072 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14680 1254 13447 76944 92911 92911 1702 1 NPESGYIEVEHCHGECVADTQLCGAR Unmodified 2987.2596 0.25963823 2837 Q9H977;Q9H977-4 WDR54 WD repeat-containing protein 54 yes no 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 41.269 41.146 4 3.8197E-18 13578 20211116_3441_TMUAki_TMT10x_S_F3 138.71 132.61 114670 200210 1991.4 238940 100510 98140 78308 206970 195050 181270 211160 106790 186960 11165 238910 95936 111110 84206 204170 193890 178090 203200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 114670 200210 1991.4 238940 100510 98140 78308 206970 195050 181270 211160 106790 186960 11165 238910 95936 111110 84206 204170 193890 178090 203200 1 1 1 1 1 1 1 1 1 1 1 203270000 0 203270000 14681 2837 13448 76945;76946 92912 92912 1 NPEVGLKPVWYSPK Unmodified 1612.8613 0.86132826 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 1 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 58.526 58.365 3 2.2932E-06 17421 20211116_3428_TMUAki_TMT10x_P_F1 111.92 93.194 40168000 72439000 854650 74827000 62439000 63534000 51369000 51367000 46329000 52808000 63050000 37406000 67602000 4438600 75998000 59643000 65147000 52529000 52884000 47945000 51516000 60305000 5 5 5 5 5 5 5 5 5 5 5 16617000 29686000 203110 28403000 35184000 41947000 27837000 20137000 17932000 20190000 23766000 15473000 27696000 1827000 29268000 33563000 41407000 28314000 21576000 18883000 19716000 22745000 2 2 2 2 2 2 2 2 2 2 2 23551000 42753000 651540 46424000 27255000 21587000 23532000 31230000 28397000 32618000 39285000 21933000 39906000 2611600 46730000 26079000 23740000 24215000 31307000 29063000 31799000 37560000 3 3 3 3 3 3 3 3 3 3 3 2663900000 1760400000 903460000 14682 542 13449 76947;76948;76949 92913;92914;92915;92916;92917 92913 5 NPEVPVNFAEFSK Unmodified 1476.7249 0.72489436 182 O15347 HMGB3 High mobility group protein B3 yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 67.241 67.265 3 0.00013404 20951 20211116_3445_TMUAki_TMT10x_S_F6 87.082 66.419 8790100 15779000 197250 14402000 11607000 17179000 10640000 12810000 12018000 11859000 12018000 8186000 14718000 952040 14832000 11117000 17232000 10886000 13216000 12166000 11621000 11593000 2 2 2 2 2 2 2 2 2 2 2 5521500 9314800 107900 8266300 7352300 13153000 7044900 7569200 7393100 7383600 6856500 5141800 8687800 583970 8580100 7048600 12973000 7172800 7972100 7486900 7218900 6630800 1 1 1 1 1 1 1 1 1 1 1 3268700 6463900 89355 6136100 4254500 4025800 3595200 5240400 4624700 4475400 5161700 3044100 6030200 368080 6251400 4068200 4258700 3713100 5243800 4678800 4402400 4962700 1 1 1 1 1 1 1 1 1 1 1 748550000 364530000 384020000 14683 182 13450 76950;76951 92918;92919 92919 2 NPEVPVNFAEFSKK Unmodified 1604.8199 0.81985737 182 O15347 HMGB3 High mobility group protein B3 yes yes 0 0 0 1 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 58.952 59.683 3 5.7059E-07 19786 20211116_3446_TMUAki_TMT10x_S_F7 101.15 78.246 22568000 36421000 88671 36117000 39147000 60876000 33968000 41985000 37655000 37441000 34978000 21012000 33984000 2028900 37237000 37401000 60065000 34840000 43505000 38051000 36754000 33825000 3 3 1 3 3 3 3 3 3 3 3 22568000 36421000 88671 36117000 39147000 60876000 33968000 41985000 37655000 37441000 34978000 21012000 33984000 2028900 37237000 37401000 60065000 34840000 43505000 38051000 36754000 33825000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1077400000 1077400000 0 14684 182 13451 76952;76953;76954 92920;92921;92922;92923;92924 92923 5 NPFGNAGLLLGEAGK Unmodified 1456.7674 0.76742787 1115 P49748;P49748-2;P49748-3 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 6.6 2.8 1 4 2 3 74.86 74.804 2;3 2.3506E-32 23737 20211116_3447_TMUAki_TMT10x_S_F8 196.57 171.65 13550000 22236000 122700 21372000 12325000 15232000 13719000 7717000 7317400 7999400 13644000 12617000 20745000 1200600 21772000 11859000 15727000 13645000 8233800 7948800 7801000 12966000 4 4 3 4 4 4 4 4 4 4 4 8697100 14271000 88451 13947000 6471800 10133000 7771300 4353100 4292000 4994100 8390100 8098500 13315000 772320 14194000 6243500 10428000 7707100 4736800 4664000 4851100 7966700 2 2 2 2 2 2 2 2 2 2 2 4852500 7964400 34250 7424900 5853300 5098900 5947900 3364000 3025400 3005300 5253700 4518300 7429700 428250 7578000 5615600 5298900 5937800 3497100 3284800 2949900 4999000 2 2 1 2 2 2 2 2 2 2 2 1147500000 569430000 578120000 14685 1115 13452 76955;76956;76957;76958;76959 92925;92926;92927;92928;92929;92930;92931 92931 7 NPFVHELR Unmodified 1010.5298 0.52976379 2248 Q8NF37 LPCAT1 Lysophosphatidylcholine acyltransferase 1 yes yes 0 0 0 0 By MS/MS 6 0 2 2 34.545 34.522 3 0.0024315 7482 20211116_3434_TMUAki_TMT10x_P_F6 92.062 66.677 112770 151790 0 165200 194760 191350 137740 105140 99059 82243 114800 105000 141690 10156 167980 185290 191390 141500 110570 103030 81266 110250 1 1 0 1 1 1 1 1 1 1 1 112770 151790 0 165200 194760 191350 137740 105140 99059 82243 114800 105000 141690 10156 167980 185290 191390 141500 110570 103030 81266 110250 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8923200 8923200 0 14686 2248 13453 76960;76961 92932;92933 92932 2 NPGFEIIHGLLDR Unmodified 1479.7834 0.78341229 2941 Q9NSD9;Q9NSD9-2 FARSB Phenylalanine--tRNA ligase beta subunit yes no 0 0 0 0 By MS/MS 7 0 1 1 71.467 71.844 3 6.6454E-06 24334 20211116_3435_TMUAki_TMT10x_P_F7 95.57 68.241 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14687 2941 13454 76962 92934 92934 1 NPGFYVEANPMPTFK Oxidation (M) 1726.8025 0.80249275 728 P19174-2;P19174 PLCG1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 yes no 0 0 1 0 By MS/MS 7 0 1 1 60.62 61.113 3 5.4082E-05 20306 20211116_3446_TMUAki_TMT10x_S_F7 89.541 73.775 4073100 7157600 78005 6837900 4856900 4663800 4553600 5057700 4998200 5067100 6014300 3793100 6677600 421370 6965800 4654200 4894200 4648600 5122700 5101400 4948400 5770400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4073100 7157600 78005 6837900 4856900 4663800 4553600 5057700 4998200 5067100 6014300 3793100 6677600 421370 6965800 4654200 4894200 4648600 5122700 5101400 4948400 5770400 1 1 1 1 1 1 1 1 1 1 1 486920000 0 486920000 14688 728 13455 76963 92935 92935 836 1 NPGVGNGDDEAAELMQQVNVLK Unmodified 2297.0958 0.095774239 1824 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 77.54 77.465 3 0.031989 27224 20211116_3430_TMUAki_TMT10x_P_F3 42.904 32.565 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14689 1824 13456 76964;76965 92936;92937 92936 2 NPGVGNGDDEAAELMQQVNVLK Oxidation (M) 2313.0907 0.090688861 1824 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 1 0 By MS/MS By MS/MS 3.6 0.49 2 3 1 4 65.86 65.594 3 4.5846E-27 21190 20211116_3442_TMUAki_TMT10x_S_F4 173.98 159.06 3546300 7213100 58963 6472800 4059600 3939500 4454900 3365000 3791800 3874900 4962100 3302400 6727900 356150 6617800 3906000 4156600 4477600 3465600 3928000 3763400 4750500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3546300 7213100 58963 6472800 4059600 3939500 4454900 3365000 3791800 3874900 4962100 3302400 6727900 356150 6617800 3906000 4156600 4477600 3465600 3928000 3763400 4750500 2 2 2 2 2 2 2 2 2 2 2 1797900000 0 1797900000 14690 1824 13456 76966;76967;76968;76969;76970 92938;92939;92940;92941 92940 2441 4 NPGYPQSEGLLGECMIR Oxidation (M) 1935.8819 0.88188206 2616 Q99961 SH3GL1 Endophilin-A2 yes yes 0 0 1 0 By MS/MS 4.5 0.5 1 1 2 52.618 52.75 3 0.00016847 15923 20211116_3442_TMUAki_TMT10x_S_F4 75.91 70.454 2532500 4555600 74812 4516600 2514000 2380800 2201500 3683200 3568000 3270700 3586900 2358500 4250700 279420 4578500 2407200 2586400 2291700 3666700 3570700 3211400 3459500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2532500 4555600 74812 4516600 2514000 2380800 2201500 3683200 3568000 3270700 3586900 2358500 4250700 279420 4578500 2407200 2586400 2291700 3666700 3570700 3211400 3459500 2 2 2 2 2 2 2 2 2 2 2 431500000 0 431500000 14691 2616 13457 76971;76972 92942;92943 92942 2862 2 NPLIAGK Unmodified 711.42792 0.42792448 1354 P62316;P62316-2 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 40.601 41.204 2 0.015053 12241 20211116_3446_TMUAki_TMT10x_S_F7 93.262 53.72 641820 1165600 0 1150400 559160 522600 823160 575880 725560 574920 907300 597580 1087600 49712 1165200 542630 572300 818140 582800 748850 561540 869610 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 641820 1165600 0 1150400 559160 522600 823160 575880 725560 574920 907300 597580 1087600 49712 1165200 542630 572300 818140 582800 748850 561540 869610 1 1 0 1 1 1 1 1 1 1 1 45609000 0 45609000 14692 1354 13458 76973;76974 92944;92945 92945 2 NPLPPSVGVVDKK Unmodified 1348.7715 0.77145062 2232 Q8NC51;Q8NC51-3;Q8NC51-2;Q8NC51-4 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 46.702 46.722 3 2.5097E-06 12806 20211116_3436_TMUAki_TMT10x_P_F8 113.59 99.141 6255300 9763600 81584 12011000 10880000 10301000 7121500 6919800 7699000 6208100 8572300 5824900 9118900 659410 12069000 10343000 10523000 7438000 7184900 7838100 6092500 8242400 3 3 3 3 3 3 3 3 3 3 3 4179100 6476400 56299 8139400 9099300 8628400 5277900 4507100 5217100 4142200 5705500 3891600 6049300 467860 8193400 8632200 8667300 5551500 4779600 5327500 4060500 5488800 2 2 2 2 2 2 2 2 2 2 2 2076200 3287200 25285 3871500 1780500 1672500 1843500 2412600 2481900 2065900 2866900 1933300 3069500 191550 3875500 1710400 1856100 1886400 2405300 2510700 2031900 2753600 1 1 1 1 1 1 1 1 1 1 1 434900000 307740000 127150000 14693 2232 13459 76975;76976;76977 92946;92947;92948;92949 92947 4 NPLPSKETIEQEK Unmodified 1511.7831 0.78313752 1356 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 44.992 45.116 3 2.452E-09 12631 20211116_3433_TMUAki_TMT10x_P_F5 132.65 95.053 20082000 32097000 154800 35823000 65327000 44225000 27760000 35863000 46928000 26752000 39966000 18699000 29964000 2386000 36408000 61700000 44347000 30715000 36612000 46656000 26503000 38769000 9 9 7 9 9 9 9 9 9 9 9 11238000 17705000 56754 19406000 55403000 35409000 18765000 20095000 25459000 14895000 21832000 10464000 16527000 1565000 19916000 52202000 34741000 21157000 21048000 25478000 14762000 21172000 5 5 4 5 5 5 5 5 5 5 5 8843700 14393000 98047 16417000 9924800 8816200 8994100 15768000 21469000 11857000 18134000 8234900 13437000 821030 16491000 9497700 9606400 9558000 15564000 21177000 11741000 17597000 4 4 3 4 4 4 4 4 4 4 4 2286100000 1726600000 559550000 14694 1356 13460 76978;76979;76980;76981;76982;76983 92950;92951;92952;92953;92954;92955;92956;92957;92958;92959 92951 10 NPNGPYPYTLK Unmodified 1262.6295 0.62953741 677 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 0 By MS/MS By MS/MS 7.8 0.4 1 4 3 2 48.428 48.545 2;3 5.342E-16 13524 20211116_3436_TMUAki_TMT10x_P_F8 211.31 179.55 23023000 35267000 127490 47770000 58040000 49321000 29233000 45836000 57599000 35328000 42203000 21436000 32955000 2356600 47873000 54925000 50071000 32037000 46464000 56809000 34936000 41189000 7 7 3 7 7 7 7 7 7 7 7 11943000 17983000 82967 24450000 49737000 41127000 21779000 23438000 30440000 18067000 21327000 11119000 16804000 1458400 24735000 46983000 40471000 23822000 24562000 30265000 17867000 20855000 4 4 2 4 4 4 4 4 4 4 4 11080000 17284000 44523 23320000 8303200 8193800 7453800 22398000 27158000 17260000 20877000 10317000 16151000 898230 23138000 7941300 9599500 8215100 21902000 26544000 17069000 20333000 3 3 1 3 3 3 3 3 3 3 3 4972000000 3208700000 1763300000 14695 677 13461 76984;76985;76986;76987;76988 92960;92961;92962;92963;92964;92965;92966 92963 7 NPNTSEPQHLLVMK Oxidation (M) 1622.8086 0.80864076 497 P05023;P05023-3;P05023-4;P05023-2 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes no 0 0 1 0 By MS/MS 5.5 0.5 1 1 2 37.685 37.681 3 1.6381E-06 8538 20211116_3434_TMUAki_TMT10x_P_F6 111.66 96.46 179700 269990 1960.6 353750 420490 365550 219300 194400 214780 149810 233040 167340 252240 20098 355150 398240 367830 232820 204960 219350 148150 224240 1 1 1 1 1 1 1 1 1 1 1 179700 269990 1960.6 353750 420490 365550 219300 194400 214780 149810 233040 167340 252240 20098 355150 398240 367830 232820 204960 219350 148150 224240 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24697000 24697000 0 14696 497 13462 76989;76990 92967;92968 92968 400 2 NPPGFAFVEFEDPR Unmodified 1620.7573 0.75725712 1457;1855 P84103;P84103-2;Q16629;Q16629-3;Q16629-2;Q16629-4 SRSF3;SRSF7 Serine/arginine-rich splicing factor 3;Serine/arginine-rich splicing factor 7 no no 0 0 0 0 By MS/MS By MS/MS 4.35 1.23 1 4 4 4 4 9 8 73.329 73.257 2;3 1.9017E-13 26611 20211116_3441_TMUAki_TMT10x_S_F3 127.52 102.08 62598000 105520000 223470 92354000 67030000 103010000 75913000 68638000 66675000 73347000 77071000 58282000 98413000 4879900 95305000 64470000 103510000 76251000 71662000 68603000 71440000 74026000 24 24 7 24 24 24 24 24 24 24 24 38841000 65579000 202530 56607000 37645000 75300000 44813000 43437000 41956000 45715000 47003000 36164000 61159000 3056900 58661000 36266000 74841000 44993000 45840000 42987000 44553000 45186000 15 15 5 15 15 15 15 15 15 15 15 23757000 39941000 20935 35747000 29385000 27711000 31099000 25201000 24719000 27632000 30068000 22118000 37254000 1823000 36644000 28204000 28669000 31258000 25822000 25616000 26887000 28840000 9 9 2 9 9 9 9 9 9 9 9 12772000000 7133800000 5638500000 14697 1457;1855 13463 76991;76992;76993;76994;76995;76996;76997;76998;76999;77000;77001;77002;77003;77004;77005;77006;77007 92969;92970;92971;92972;92973;92974;92975;92976;92977;92978;92979;92980;92981;92982;92983;92984;92985;92986;92987;92988;92989;92990;92991;92992;92993 92986 25 NPPGFAFVEFEDPRDAADAVR Unmodified 2319.092 0.09200949 1457 P84103;P84103-2 SRSF3 Serine/arginine-rich splicing factor 3 yes no 0 0 0 1 By MS/MS By MS/MS 4.19 1.48 2 2 17 12 9 8 4 32 22 66.327 66.315 2;3;4 4.5698E-35 22591 20211116_3444_TMUAki_TMT10x_S_F5 191.44 166.24 165060000 283800000 1936600 255030000 205270000 249840000 214130000 185930000 174520000 191500000 216870000 153690000 264710000 14714000 262130000 197070000 253400000 215510000 192430000 180780000 186800000 207890000 73 73 49 73 72 73 73 72 73 73 73 69279000 117060000 1223200 105650000 72757000 133960000 86850000 77745000 73256000 82314000 91368000 64513000 109180000 6730400 109010000 70179000 133460000 86938000 82020000 75763000 80204000 87579000 41 41 31 41 40 41 41 40 41 41 41 95778000 166740000 713350 149380000 132510000 115870000 127280000 108190000 101260000 109190000 125500000 89175000 155520000 7983100 153120000 126890000 119940000 128570000 110410000 105020000 106600000 120310000 32 32 18 32 32 32 32 32 32 32 32 149410000000 73881000000 75529000000 14698 1457 13464 77008;77009;77010;77011;77012;77013;77014;77015;77016;77017;77018;77019;77020;77021;77022;77023;77024;77025;77026;77027;77028;77029;77030;77031;77032;77033;77034;77035;77036;77037;77038;77039;77040;77041;77042;77043;77044;77045;77046;77047;77048;77049;77050;77051;77052;77053;77054;77055;77056;77057;77058;77059;77060;77061 92994;92995;92996;92997;92998;92999;93000;93001;93002;93003;93004;93005;93006;93007;93008;93009;93010;93011;93012;93013;93014;93015;93016;93017;93018;93019;93020;93021;93022;93023;93024;93025;93026;93027;93028;93029;93030;93031;93032;93033;93034;93035;93036;93037;93038;93039;93040;93041;93042;93043;93044;93045;93046;93047;93048;93049;93050;93051;93052;93053;93054;93055;93056;93057;93058;93059;93060;93061;93062;93063;93064;93065;93066;93067;93068;93069;93070;93071;93072;93073 93058 80 NPPGFAFVEFEDPRDAADAVRELDGR Unmodified 2889.3682 0.36818435 1457 P84103;P84103-2 SRSF3 Serine/arginine-rich splicing factor 3 yes no 0 0 0 2 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 77.263 77.207 4 3.1538E-23 25571 20211116_3431_TMUAki_TMT10x_P_F4 147.11 140.68 19348000 32521000 166570 27546000 29836000 32852000 24575000 29211000 27062000 25273000 28940000 18015000 30327000 1565200 28532000 28480000 33059000 25279000 29765000 27489000 24845000 27859000 7 7 3 7 7 7 7 7 7 7 7 10770000 17701000 82897 15340000 9872100 22532000 13608000 16558000 15895000 14564000 16242000 10027000 16508000 616740 15924000 9558900 22376000 13678000 17077000 16083000 14306000 15658000 4 4 1 4 4 4 4 4 4 4 4 8578000 14820000 83670 12205000 19964000 10321000 10967000 12653000 11167000 10708000 12697000 7987600 13819000 948500 12608000 18922000 10683000 11601000 12689000 11406000 10539000 12201000 3 3 2 3 3 3 3 3 3 3 3 10432000000 5118800000 5313000000 14699 1457 13465 77062;77063;77064;77065;77066;77067 93074;93075;93076;93077;93078;93079;93080 93077 7 NPPGFAFVEFEDPRDAEDAVR Unmodified 2377.0975 0.097488798 1855 Q16629;Q16629-3;Q16629-2;Q16629-4 SRSF7 Serine/arginine-rich splicing factor 7 yes no 0 0 0 1 By MS/MS By MS/MS 3.04 1.23 2 8 9 4 3 1 20 7 79.268 79.217 3 3.0126E-26 24267 20211116_3429_TMUAki_TMT10x_P_F2 166.27 150.5 194520000 343600000 1727200 305110000 253400000 281750000 250090000 192640000 180320000 210220000 256050000 181120000 320470000 15689000 313640000 242920000 286460000 251690000 200880000 189180000 204590000 244660000 52 52 32 52 52 52 52 52 52 52 52 76638000 128390000 744340 115380000 69952000 143210000 93795000 76812000 75714000 85801000 97311000 71361000 119750000 6595100 119040000 67695000 142680000 93334000 81717000 78584000 83427000 93203000 36 36 24 36 36 36 36 36 36 36 36 117880000 215210000 982840 189730000 183450000 138540000 156300000 115820000 104600000 124420000 158740000 109760000 200720000 9093700 194590000 175230000 143780000 158360000 119160000 110600000 121160000 151450000 16 16 8 16 16 16 16 16 16 16 16 78852000000 42083000000 36769000000 14700 1855 13466 77068;77069;77070;77071;77072;77073;77074;77075;77076;77077;77078;77079;77080;77081;77082;77083;77084;77085;77086;77087;77088;77089;77090;77091;77092;77093;77094 93081;93082;93083;93084;93085;93086;93087;93088;93089;93090;93091;93092;93093;93094;93095;93096;93097;93098;93099;93100;93101;93102;93103;93104;93105;93106;93107;93108;93109;93110;93111;93112;93113;93114;93115;93116;93117;93118;93119;93120;93121;93122;93123;93124;93125;93126;93127;93128;93129;93130 93083 50 NPPNQSSNERPPSLLVIETK Unmodified 2219.1546 0.15460975 156 O15042;O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 3 3 3 3 50.74 50.957 3;4 1.721E-24 16266 20211116_3446_TMUAki_TMT10x_S_F7 169.84 154.59 15037000 24870000 45721 29219000 16873000 17001000 13847000 15510000 16053000 15131000 19873000 14000000 23222000 1216600 29318000 16099000 18039000 14272000 15833000 16370000 14793000 19053000 7 7 3 7 7 7 7 7 7 7 7 4636500 7361100 0 8669200 7952900 9358500 5796600 4679600 4909400 4590900 5868100 4316900 6873600 410860 8761900 7570100 9386200 5965000 4991300 5067300 4487300 5631100 2 2 0 2 2 2 2 2 2 2 2 10400000 17509000 45721 20550000 8919700 7642200 8050700 10831000 11143000 10540000 14005000 9683500 16349000 805740 20556000 8528500 8653200 8307400 10842000 11303000 10306000 13422000 5 5 3 5 5 5 5 5 5 5 5 1304800000 596120000 708640000 14701 156 13467 77095;77096;77097;77098;77099;77100 93131;93132;93133;93134;93135;93136;93137;93138;93139 93137 9 NPQMPQYSSPQPGSALSPR Oxidation (M) 2056.9636 0.96363785 111 O14497;O14497-3;O14497-2 ARID1A AT-rich interactive domain-containing protein 1A yes no 0 0 1 0 By MS/MS 6.5 0.5 1 1 2 37.754 37.971 3 6.8538E-18 10486 20211116_3435_TMUAki_TMT10x_P_F7 152.13 141.8 164060 250470 879.27 274710 423600 407130 235710 236900 275870 169950 257720 152750 233800 17105 280510 401430 402760 250160 247450 278250 168740 249180 2 2 1 2 2 2 2 2 2 2 2 164060 250470 879.27 274710 423600 407130 235710 236900 275870 169950 257720 152750 233800 17105 280510 401430 402760 250160 247450 278250 168740 249180 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 61416000 61416000 0 14702 111 13468 77101;77102 93140;93141 93141 89 2 NPQSTEPVLGGGEPPFHGHR Unmodified 2112.0137 0.013699589 2719 Q9BXW7;Q9BXW7-2 CECR5 Cat eye syndrome critical region protein 5 yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 34.152 34.203 4 8.3937E-07 8445 20211116_3433_TMUAki_TMT10x_P_F5 92.932 85.566 2655900 3955900 1172.6 4559400 5365800 5555300 3304200 3017900 3075900 2785500 3789800 2472800 3693600 147280 4623600 5092500 5541000 3452400 3189500 3164600 2730000 3633800 6 6 2 6 6 6 6 6 6 6 6 2237500 3282800 0 3796700 4975900 5208400 2872900 2580600 2640000 2385400 3225500 2083300 3065200 112260 3858100 4717500 5159800 3016800 2750500 2716700 2337800 3093400 3 3 0 3 3 3 3 3 3 3 3 418340 673110 1172.6 762650 389950 346960 431360 437360 435900 400100 564280 389530 628420 35023 765480 374990 381130 435520 439000 447810 392300 540370 3 3 2 3 3 3 3 3 3 3 3 341660000 304160000 37498000 14703 2719 13469 77103;77104;77105 93142;93143;93144;93145;93146;93147 93144 6 NPRPVTYQFHPNLDYYK Unmodified 2151.0538 0.05377349 2347 Q92609;Q92609-2 TBC1D5 TBC1 domain family member 5 yes no 0 0 0 1 By MS/MS 2 0 1 1 49.163 48.89 4 0.001483 15151 20211116_3429_TMUAki_TMT10x_P_F2 62.658 43.587 2571800 3963600 11841 4321300 4691000 5832600 3285000 3260700 3052300 3093600 3379900 2394700 3699800 253940 4405800 4463300 5790800 3398500 3440100 3127000 3028300 3250300 1 1 1 1 1 1 1 1 1 1 1 2571800 3963600 11841 4321300 4691000 5832600 3285000 3260700 3052300 3093600 3379900 2394700 3699800 253940 4405800 4463300 5790800 3398500 3440100 3127000 3028300 3250300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 454600000 454600000 0 14704 2347 13470 77106 93148 93148 1 NPSAAFFCVAR Unmodified 1238.5866 0.58662674 317 O75223;O75223-3;O75223-2;O75223-4 GGCT Gamma-glutamylcyclotransferase yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 55.23 54.981 2 3.4631E-11 18082 20211116_3430_TMUAki_TMT10x_P_F3 130.53 109.38 6484100 10702000 115590 10962000 10650000 16044000 8964300 8929000 7677900 7763400 9407200 6038200 9987500 703650 11240000 10176000 15872000 9141200 9402600 7928600 7630100 9021200 2 2 2 2 2 2 2 2 2 2 2 6484100 10702000 115590 10962000 10650000 16044000 8964300 8929000 7677900 7763400 9407200 6038200 9987500 703650 11240000 10176000 15872000 9141200 9402600 7928600 7630100 9021200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 508690000 508690000 0 14705 317 13471 77107;77108;77109 93149;93150;93151;93152 93151 4 NPSDSAVHSPFTK Unmodified 1385.6575 0.65754307 1685 Q14157;Q14157-1;Q14157-4;Q14157-3;Q14157-5 UBAP2L Ubiquitin-associated protein 2-like yes no 0 0 0 0 By MS/MS 6 0 1 1 37.016 37.004 3 0.0013992 8155 20211116_3434_TMUAki_TMT10x_P_F6 69.92 56.111 237670 359880 16875 449440 581770 544310 313110 250800 272150 221360 352030 221420 336150 40250 453600 552090 542050 330380 268930 281490 217410 337120 1 1 1 1 1 1 1 1 1 1 1 237670 359880 16875 449440 581770 544310 313110 250800 272150 221360 352030 221420 336150 40250 453600 552090 542050 330380 268930 281490 217410 337120 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30650000 30650000 0 14706 1685 13472 77110 93153 93153 1 NPSIVGVLCTDSQGLNLGCR Unmodified 2159.0463 0.046321626 221 O43504 LAMTOR5 Ragulator complex protein LAMTOR5 yes yes 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 71.548 71.583 3 3.8995E-18 22431 20211116_3447_TMUAki_TMT10x_S_F8 142.88 131.27 1739600 3394900 184000 2999200 2332400 2772800 2444800 2280000 2492100 2367000 2374800 1621100 3166400 324000 3084200 2250400 2827600 2475400 2345600 2529100 2308200 2294600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1739600 3394900 184000 2999200 2332400 2772800 2444800 2280000 2492100 2367000 2374800 1621100 3166400 324000 3084200 2250400 2827600 2475400 2345600 2529100 2308200 2294600 1 1 1 1 1 1 1 1 1 1 1 789570000 0 789570000 14707 221 13473 77111;77112 93154 93154 1 NPSTNFQEPVQPLTQQQVAQMQLK Unmodified 2753.3807 0.38066329 735 P19623 SRM Spermidine synthase yes yes 0 0 0 0 By MS/MS 8 0 1 1 67.105 67.018 3 6.3843E-06 20529 20211116_3447_TMUAki_TMT10x_S_F8 76.889 63.297 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14708 735 13474 77113 93155 93155 1 NPSTSLGPTLEPEEVVNR Unmodified 1937.9694 0.96943474 2226 Q8NBQ5 HSD17B11 Estradiol 17-beta-dehydrogenase 11 yes yes 0 0 0 0 By MS/MS 3 0 1 1 54.537 54.157 3 2.094E-06 18826 20211116_3441_TMUAki_TMT10x_S_F3 97.32 83.907 2353500 3983400 26261 4021200 2556000 2556700 2045300 3597700 3424700 3245900 3166900 2191600 3717100 222430 4077700 2439500 2718300 2144000 3594800 3414500 3184600 3063000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2353500 3983400 26261 4021200 2556000 2556700 2045300 3597700 3424700 3245900 3166900 2191600 3717100 222430 4077700 2439500 2718300 2144000 3594800 3414500 3184600 3063000 1 1 1 1 1 1 1 1 1 1 1 100120000 0 100120000 14709 2226 13475 77114 93156 93156 1 NPSTVEAFDLAQSNSEHSR Unmodified 2087.9508 0.95082456 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 0 By MS/MS By matching 3.33 0.471 2 1 2 1 43.912 43.849 3 1.4463E-63 13352 20211116_3430_TMUAki_TMT10x_P_F3 258.38 243.78 943590 1611900 4482.9 1918500 2497300 2719800 1387000 1378500 1382900 1137200 1438900 878580 1505200 101210 1947500 2366700 2691200 1464800 1462000 1409000 1120600 1386400 2 2 1 2 2 2 2 2 2 2 2 943590 1611900 4482.9 1918500 2497300 2719800 1387000 1378500 1382900 1137200 1438900 878580 1505200 101210 1947500 2366700 2691200 1464800 1462000 1409000 1120600 1386400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1095700000 982800000 112850000 14710 157 13476 77115;77116;77117 93157;93158 93157 2 NPTDAYQLNYDMHNPFDICAASYRPIYR Oxidation (M) 3420.5292 0.5291948 1207 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 1 1 By MS/MS By MS/MS 8 0 2 1 1 65.201 65.252 4 2.7054E-33 20303 20211116_3436_TMUAki_TMT10x_P_F8 170.16 163.78 4045500 7493900 73267 7493300 5083900 6583700 5438800 4989100 4842900 5337700 5652400 3767200 6992600 404190 7630800 4887100 6727300 5479800 5163500 4981600 5198700 5427600 3 3 2 3 3 3 3 3 3 3 3 1310500 2381300 34518 2370700 1584100 3015800 1866200 1862000 1526700 1768200 1743400 1220400 2222000 144650 2428900 1528100 3006600 1867700 1948600 1575700 1730800 1675100 1 1 1 1 1 1 1 1 1 1 1 2735100 5112500 38749 5122500 3499700 3567800 3572500 3127100 3316200 3569400 3909000 2546800 4770600 259550 5201900 3359000 3720700 3612000 3214900 3405900 3467900 3752500 2 2 1 2 2 2 2 2 2 2 2 2977300000 1452800000 1524500000 14711 1207 13477 77118;77119 93159;93160;93161 93159 1622 3 NPTDAYQLNYDMHNPFDICAASYRPIYR Unmodified 3404.5343 0.53428018 1207 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 1 By MS/MS 8 0 1 1 70.407 70.239 4 1.2272E-12 21901 20211116_3447_TMUAki_TMT10x_S_F8 111.2 104.9 1148000 1798300 28693 1673400 1267500 1166300 1382000 1122800 992950 1334200 1267300 1069100 1677600 123590 1708400 1220000 1218400 1383800 1150100 1036900 1294300 1214100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1148000 1798300 28693 1673400 1267500 1166300 1382000 1122800 992950 1334200 1267300 1069100 1677600 123590 1708400 1220000 1218400 1383800 1150100 1036900 1294300 1214100 1 1 1 1 1 1 1 1 1 1 1 702370000 0 702370000 14712 1207 13477 77120 93162 93162 1 NPTFLDYVRPR Unmodified 1376.7201 0.72008375 937 P35610;P35610-3;P35610-2 SOAT1 Sterol O-acyltransferase 1 yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 52.511 52.3 3 1.5479E-14 16524 20211116_3429_TMUAki_TMT10x_P_F2 155.86 123.33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14713 937 13478 77121;77122 93163;93164 93163 2 NPTIVNFPITNVDLR Unmodified 1711.9257 0.92571943 1906 Q53GS9;Q53GS9-2 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 7.8 0.4 1 4 2 3 73.176 73.113 2;3 1.8173E-51 23021 20211116_3447_TMUAki_TMT10x_S_F8 289.38 249.23 9351400 15625000 41516 14662000 11186000 13952000 12092000 13206000 11861000 12138000 12863000 8707100 14576000 808690 15015000 10749000 14240000 12211000 13433000 12112000 11898000 12377000 6 6 4 6 6 6 6 6 6 6 6 3164300 5568700 10725 5240900 3625300 6643600 4280900 4799300 4220000 4212100 4024400 2946400 5195000 278800 5390700 3493200 6640100 4306100 4955100 4288900 4137900 3888200 2 2 2 2 2 2 2 2 2 2 2 6187100 10056000 30791 9420800 7561000 7308300 7811300 8406800 7641100 7925500 8838500 5760700 9380900 529900 9624000 7256000 7600200 7905000 8477600 7823400 7760300 8489100 4 4 2 4 4 4 4 4 4 4 4 2724700000 1453600000 1271200000 14714 1906 13479 77123;77124;77125;77126;77127 93165;93166;93167;93168;93169;93170;93171 93170 7 NPYYGGESASITPLEDLYK Unmodified 2116.0001 6.61646E-05 1133 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 0 By MS/MS By MS/MS 5 1.07 1 1 2 3 3 4 74.698 74.664 2;3 1.4686E-22 23995 20211116_3445_TMUAki_TMT10x_S_F6 161.76 135.71 19539000 32974000 53763 33042000 20948000 27983000 24521000 17428000 18404000 19415000 25105000 18191000 30768000 1533300 33628000 20168000 28582000 24496000 18311000 19228000 18880000 24010000 10 10 4 10 10 10 10 10 10 10 10 8137100 13314000 8467.4 13585000 8101500 15049000 9924700 7205400 7819900 8021200 10299000 7576100 12424000 625540 13861000 7810800 15064000 9906500 7746200 8135500 7800300 9858200 4 4 1 4 4 4 4 4 4 4 4 11401000 19660000 45296 19458000 12846000 12934000 14596000 10222000 10584000 11394000 14806000 10615000 18344000 907760 19767000 12358000 13518000 14590000 10565000 11093000 11079000 14152000 6 6 3 6 6 6 6 6 6 6 6 4932200000 1746100000 3186100000 14715 1133 13480 77128;77129;77130;77131;77132;77133;77134 93172;93173;93174;93175;93176;93177;93178;93179;93180;93181;93182;93183 93183 12 NPYYGGESASITPLEDLYKR Unmodified 2272.1012 0.10117719 1133 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 1 By MS/MS By MS/MS 5.91 0.996 1 3 3 4 4 7 64.374 64.606 3;4 9.3456E-65 19402 20211116_3434_TMUAki_TMT10x_P_F6 273.79 262.15 132910000 241310000 892270 203320000 154700000 248110000 192390000 159810000 137490000 168320000 180450000 123750000 225030000 9193100 210770000 149250000 248010000 191480000 167190000 143800000 164040000 172740000 16 16 8 16 16 16 16 16 16 16 16 76565000 141130000 270450 116290000 89567000 178220000 121980000 99711000 81311000 101310000 103270000 71282000 131590000 4833500 121320000 86636000 175980000 120780000 105390000 85279000 98881000 98938000 7 7 2 7 7 7 7 7 7 7 7 56342000 100190000 621820 87028000 65133000 69886000 70405000 60098000 56178000 67007000 77181000 52463000 93434000 4359500 89456000 62612000 72032000 70698000 61804000 58519000 65158000 73804000 9 9 6 9 9 9 9 9 9 9 9 25489000000 12293000000 13196000000 14716 1133 13481 77135;77136;77137;77138;77139;77140;77141;77142;77143;77144;77145 93184;93185;93186;93187;93188;93189;93190;93191;93192;93193;93194;93195;93196;93197;93198;93199;93200 93185 17 NPYYGGESSSITPLEELYK Unmodified 2146.0106 0.010630851 884 P31150 GDI1 Rab GDP dissociation inhibitor alpha yes yes 0 0 0 0 By MS/MS By MS/MS 4.75 0.829 2 1 1 1 3 74.195 74.161 3 4.6039E-05 24760 20211116_3442_TMUAki_TMT10x_S_F4 78.088 62.834 22778000 37633000 755640 39228000 28838000 28059000 28385000 20378000 19271000 23078000 30626000 21214000 35122000 2617100 39739000 27681000 29101000 28533000 21187000 20407000 22428000 29192000 6 6 4 6 6 6 6 6 6 6 6 4900600 7372500 30365 7477900 4872500 9497000 5901700 5281500 4842500 5406900 6062600 4562900 6879700 400740 7651400 4697600 9455700 5899700 5586300 5016000 5275500 5810600 2 2 1 2 2 2 2 2 2 2 2 17877000 30261000 725270 31750000 23965000 18562000 22483000 15096000 14429000 17671000 24563000 16651000 28242000 2216400 32088000 22984000 19646000 22634000 15601000 15391000 17152000 23382000 4 4 3 4 4 4 4 4 4 4 4 1740500000 496510000 1244000000 14717 884 13482 77146;77147;77148;77149 93201;93202;93203;93204;93205 93204 5 NPYYGGESSSITPLEELYKR Unmodified 2302.1117 0.11174188 884 P31150 GDI1 Rab GDP dissociation inhibitor alpha yes yes 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 63.918 64.194 3 1.0402E-58 19667 20211116_3445_TMUAki_TMT10x_S_F6 245.61 237.22 31516000 55082000 156970 49311000 39134000 58085000 45820000 37030000 34597000 37921000 43987000 29345000 51376000 2804700 50844000 37697000 58159000 45780000 38739000 36021000 36999000 42142000 7 7 5 7 7 7 7 7 7 7 7 15943000 28087000 141290 26059000 20654000 37913000 24578000 20236000 18823000 19955000 22457000 14845000 26201000 1519400 26905000 19911000 37495000 24547000 21458000 19530000 19501000 21551000 4 4 4 4 4 4 4 4 4 4 4 15573000 26995000 15681 23253000 18480000 20172000 21242000 16794000 15774000 17965000 21530000 14500000 25175000 1285300 23940000 17785000 20664000 21233000 17280000 16491000 17497000 20591000 3 3 1 3 3 3 3 3 3 3 3 5536800000 2496200000 3040700000 14718 884 13483 77150;77151;77152;77153 93206;93207;93208;93209;93210;93211;93212 93210 7 NQALFPACVLK Unmodified 1259.6696 0.66962808 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 By MS/MS By MS/MS 3.57 2.87 4 4 2 4 6 8 64.424 64.255 2;3 1.0789E-18 19737 20211116_3428_TMUAki_TMT10x_P_F1 226.47 185.02 88660000 158030000 753880 139710000 109950000 133300000 90451000 94539000 79794000 79588000 117060000 82552000 147390000 7788400 143720000 104940000 135320000 92438000 97629000 82965000 78346000 111770000 16 16 10 16 16 16 16 16 16 16 16 43959000 76345000 395110 66545000 65488000 92351000 53009000 47695000 41195000 39521000 55950000 40930000 71202000 3990300 68965000 62482000 91486000 54056000 50502000 42950000 38935000 53516000 8 8 4 8 8 8 8 8 8 8 8 44701000 81686000 358770 73163000 44459000 40948000 37442000 46843000 38598000 40066000 61112000 41622000 76190000 3798100 74759000 42459000 43835000 38382000 47127000 40015000 39410000 58256000 8 8 6 8 8 8 8 8 8 8 8 15426000000 8618400000 6807700000 14719 2334 13484 77154;77155;77156;77157;77158;77159;77160;77161;77162;77163;77164;77165;77166;77167 93213;93214;93215;93216;93217;93218;93219;93220;93221;93222;93223;93224;93225;93226;93227;93228;93229;93230;93231 93214 19 NQALNTDNYGHDLASVQALQR Unmodified 2327.1254 0.12543488 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 2 2 50.943 51.115 3 1.2074E-55 15075 20211116_3433_TMUAki_TMT10x_P_F5 231.1 220.6 12169000 20804000 187380 26069000 17639000 18005000 12815000 14668000 14918000 12984000 18793000 11331000 19432000 1136800 26102000 16795000 18765000 13317000 15031000 15222000 12750000 18009000 7 7 4 7 7 7 7 7 7 7 7 5754200 9391700 83317 10648000 12079000 13008000 8114700 7281100 7622200 6567200 8366300 5358100 8768100 607200 10810000 11485000 12978000 8423100 7670600 7802200 6443300 8047600 3 3 2 3 3 3 3 3 3 3 3 6415000 11412000 104060 15420000 5559900 4997000 4700800 7386600 7296000 6416600 10427000 5973100 10664000 529550 15292000 5310100 5787300 4893500 7360500 7420000 6306800 9961700 4 4 2 4 4 4 4 4 4 4 4 2060000000 1294600000 765470000 14720 1663 13485 77168;77169;77170;77171 93232;93233;93234;93235;93236;93237;93238 93233 7 NQAVNFLR Unmodified 960.51411 0.51411372 2067 Q7LBR1 CHMP1B Charged multivesicular body protein 1b yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 41.898 42.028 2 0.060804 10305 20211116_3447_TMUAki_TMT10x_S_F8 56.547 33.766 4711700 7535800 614.05 9104200 9877500 8017300 6025800 7865100 9160600 6508500 8090500 4387000 7037500 455560 9160700 9373700 8231200 6410700 7963800 9144200 6412500 7837700 2 2 1 2 2 2 2 2 2 2 2 1782600 2992700 0 3814800 7253800 5157300 3015300 3115400 3228600 2663200 2884800 1659800 2795600 216420 3853800 6848200 5125200 3286800 3257100 3263000 2619600 2793500 1 1 0 1 1 1 1 1 1 1 1 2929000 4543000 614.05 5289400 2623700 2860100 3010600 4749600 5932100 3845300 5205600 2727200 4241900 239130 5307000 2525500 3106000 3124000 4706700 5881200 3792800 5044200 1 1 1 1 1 1 1 1 1 1 1 106630000 50388000 56245000 14721 2067 13486 77172;77173 93239;93240 93240 2 NQDATVYVGGLDEK Unmodified 1507.7155 0.71545188 1805 Q15427 SF3B4 Splicing factor 3B subunit 4 yes yes 0 0 0 0 By MS/MS By MS/MS 3.38 0.696 1 3 4 2 6 51.113 50.991 2;3 7.283E-33 15274 20211116_3442_TMUAki_TMT10x_S_F4 224.42 176.14 16346000 27694000 245390 30423000 21366000 22902000 17387000 20684000 22703000 18612000 24592000 15220000 25852000 1574800 30731000 20396000 23745000 18009000 21080000 22930000 18263000 23664000 6 6 4 6 6 6 6 6 6 6 6 5906100 9344400 107060 10471000 11852000 12447000 7153500 7744600 8142200 6792700 8753800 5499400 8723600 601040 10632000 11248000 12453000 7532400 8083000 8261700 6673300 8425600 2 2 1 2 2 2 2 2 2 2 2 10439000 18350000 138330 19952000 9514400 10455000 10234000 12939000 14560000 11819000 15838000 9721100 17128000 973750 20099000 9148800 11293000 10477000 12997000 14669000 11590000 15239000 4 4 3 4 4 4 4 4 4 4 4 954610000 249970000 704640000 14722 1805 13487 77174;77175;77176;77177;77178;77179;77180;77181 93241;93242;93243;93244;93245;93246;93247;93248;93249 93248 9 NQDDFECVTTLEGHENEVK Unmodified 2262.9699 0.96990502 380 O76071 CIAO1 Probable cytosolic iron-sulfur protein assembly protein CIAO1 yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.943 2 1 2 1 51.335 51.154 3 1.5822E-32 14505 20211116_3428_TMUAki_TMT10x_P_F1 197.84 178.81 2014000 3640300 9460.2 3871800 3625700 4810300 2545200 3319500 3002800 2868800 3037100 1875200 3397700 193320 3947600 3449500 4809000 2652400 3436800 3036000 2820400 2928700 2 2 1 2 2 2 2 2 2 2 2 1277600 2425900 9460.2 2551600 2967800 4223800 2084300 2148500 1987700 1783500 1990400 1189700 2264100 138410 2619100 2824000 4153100 2157400 2278300 2026400 1756900 1919900 1 1 1 1 1 1 1 1 1 1 1 736330 1214400 0 1320300 657840 586480 460920 1171000 1015100 1085300 1046700 685560 1133600 54910 1328500 625490 655870 494980 1158500 1009600 1063500 1008700 1 1 0 1 1 1 1 1 1 1 1 549590000 414150000 135440000 14723 380 13488 77182;77183;77184 93250;93251;93252 93250 3 NQDECVIALHDCNGDVNR Unmodified 2127.9062 0.90619933 1685 Q14157;Q14157-1;Q14157-4;Q14157-3;Q14157-5 UBAP2L Ubiquitin-associated protein 2-like yes no 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 36.699 36.565 3 3.673E-31 8613 20211116_3428_TMUAki_TMT10x_P_F1 180.32 171.03 766890 1258600 10720 1635100 1731700 1435800 880220 1625800 2176500 1128000 1456000 714050 1175800 77523 1638500 1639000 1479200 977490 1628500 2131900 1122200 1426800 4 4 3 4 4 4 4 4 4 4 4 350450 588540 2138.5 782210 1421500 1109700 555540 651780 808520 459600 647780 326250 549890 36489 789200 1340800 1100000 616620 680050 805750 456790 629860 2 2 1 2 2 2 2 2 2 2 2 416440 670050 8581.7 852920 310130 326070 324680 973990 1368000 668410 808210 387810 625910 41035 849330 298260 379230 360870 948440 1326200 665390 796980 2 2 2 2 2 2 2 2 2 2 2 177420000 112570000 64858000 14724 1685 13489 77185;77186;77187;77188 93253;93254;93255;93256 93253 4 NQDEESQEAPELLK Unmodified 1628.753 0.7529596 2241 Q8NE71;Q8NE71-2 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 3 1 2 47.23 47.059 3 0.00024156 14419 20211116_3429_TMUAki_TMT10x_P_F2 81.311 68.33 1172300 1918400 45504 2452900 3068800 3084900 1648000 1872400 2113700 1647500 1929200 1091900 1792100 166160 2474100 2909500 3076500 1760400 1958200 2123500 1618300 1866800 1 1 1 1 1 1 1 1 1 1 1 1172300 1918400 45504 2452900 3068800 3084900 1648000 1872400 2113700 1647500 1929200 1091900 1792100 166160 2474100 2909500 3076500 1760400 1958200 2123500 1618300 1866800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 145410000 91907000 53501000 14725 2241 13490 77189;77190;77191 93257;93258 93257 2 NQDHYAVLGLGHVR Unmodified 1577.8063 0.806273 2581 Q99543;Q99543-2 DNAJC2 DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed yes no 0 0 0 0 By matching By MS/MS 5 0 2 1 1 35.462 35.53 4 0.062214 7732 20211116_3444_TMUAki_TMT10x_S_F5 37.657 23.751 307380 470600 565.63 552990 289680 262210 303670 299580 341210 281990 399020 286210 439430 25763 553980 278140 285900 308460 302180 347530 276130 383130 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 307380 470600 565.63 552990 289680 262210 303670 299580 341210 281990 399020 286210 439430 25763 553980 278140 285900 308460 302180 347530 276130 383130 1 1 1 1 1 1 1 1 1 1 1 71758000 49758000 22000000 14726 2581 13491 77192;77193 93259 93259 1 NQDLALSNLESIPGGYNALRR Unmodified 2300.1873 0.18730686 3119 Q9UHD9 UBQLN2 Ubiquilin-2 yes yes 0 0 0 1 By MS/MS 7.5 0.5 1 1 2 63.015 63.241 3 4.4421E-19 18939 20211116_3447_TMUAki_TMT10x_S_F8 144.74 128.06 7025500 12375000 30237 11387000 9316400 8090900 8129000 9244800 8979200 8385300 10059000 6540900 11544000 542060 11637000 8898400 8471700 8334000 9315500 9135900 8224900 9669800 4 4 1 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7025500 12375000 30237 11387000 9316400 8090900 8129000 9244800 8979200 8385300 10059000 6540900 11544000 542060 11637000 8898400 8471700 8334000 9315500 9135900 8224900 9669800 4 4 1 4 4 4 4 4 4 4 4 1730100000 0 1730100000 14727 3119 13492 77194;77195 93260;93261;93262;93263 93262 4 NQDLAPNSAEQASILSLVTK Unmodified 2098.0906 0.090612506 1575 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 77.38 77.396 2;3 1.7012E-24 24693 20211116_3434_TMUAki_TMT10x_P_F6 174.62 158.73 5880100 10180000 16293 8017600 5380500 12613000 7277400 9304700 7859100 8529700 8080800 5474700 9490500 439180 8400700 5204100 12491000 7300600 9604200 7977700 8362400 7788400 2 2 1 2 2 2 2 2 2 2 2 5880100 10180000 16293 8017600 5380500 12613000 7277400 9304700 7859100 8529700 8080800 5474700 9490500 439180 8400700 5204100 12491000 7300600 9604200 7977700 8362400 7788400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3454800000 1649900000 1805000000 14728 1575 13493 77196;77197;77198;77199;77200 93264;93265;93266 93265 3 NQDLEFER Unmodified 1049.4778 0.47778779 758 P21399 ACO1 Cytoplasmic aconitate hydratase yes yes 0 0 0 0 By MS/MS 2 0 1 1 35.26 35.353 2 0.041989 8343 20211116_3440_TMUAki_TMT10x_S_F2 60.518 47.892 75670 128320 1249.6 157610 79366 56151 84195 79865 103570 78088 112830 70465 119840 7489.9 157200 76297 63994 85750 79952 104850 76339 108550 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 75670 128320 1249.6 157610 79366 56151 84195 79865 103570 78088 112830 70465 119840 7489.9 157200 76297 63994 85750 79952 104850 76339 108550 1 1 1 1 1 1 1 1 1 1 1 2813900 0 2813900 14729 758 13494 77201 93267 93267 1 NQEDIILFR Unmodified 1146.6033 0.60332266 2739 Q9BZI7;Q9BZI7-2 UPF3B Regulator of nonsense transcripts 3B yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 56.41 56.462 2 0.002395 17667 20211116_3442_TMUAki_TMT10x_S_F4 85.733 41.093 9380000 15188000 99640 15274000 11817000 14727000 10991000 13899000 12494000 11796000 12630000 8734400 14172000 904660 15567000 11316000 15018000 11239000 14110000 12649000 11608000 12179000 2 2 2 2 2 2 2 2 2 2 2 5162400 8124600 88480 8132200 7162700 10543000 7013800 6701900 5994900 5731700 6468700 4807400 7581100 538480 8331700 6869500 10505000 7090700 6978800 6160200 5637800 6225400 1 1 1 1 1 1 1 1 1 1 1 4217500 7063300 11159 7141400 4654700 4184500 3977500 7196600 6498800 6064800 6161000 3927000 6591100 366190 7235700 4446800 4513000 4148000 7131100 6489100 5969800 5953800 1 1 1 1 1 1 1 1 1 1 1 5492900000 2772400000 2720500000 14730 2739 13495 77202;77203 93268;93269 93269 2 NQEDTFAAELHR Unmodified 1429.6586 0.65860571 3108 Q9UGJ1;Q9UGJ1-2 TUBGCP4 Gamma-tubulin complex component 4 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 37.166 37.096 3 0.00075126 8785 20211116_3440_TMUAki_TMT10x_S_F2 78.401 59.13 975350 1365100 0 1470300 1538700 1406100 1183000 1078900 1034000 950380 1158500 908020 1274200 73113 1491500 1465500 1429000 1214000 1109700 1062800 933490 1113700 3 3 0 3 3 3 3 3 3 3 3 652300 825250 0 855370 1199100 1161700 858750 760160 701100 667840 744380 607250 770160 48143 875080 1140400 1155600 883990 790380 721690 656050 716740 1 1 0 1 1 1 1 1 1 1 1 323050 539860 0 614890 339610 244370 324290 318780 332850 282540 414080 300780 504030 24970 616450 325110 273480 330010 319270 341130 277440 396930 2 2 0 2 2 2 2 2 2 2 2 56708000 42337000 14371000 14731 3108 13496 77204;77205 93270;93271;93272 93272 3 NQEVVLRR Unmodified 1012.5778 0.57777661 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4 KIF21A Kinesin-like protein KIF21A yes no 0 0 0 1 By MS/MS 4 0 1 1 27.392 27.441 3 0.059516 5378 20211116_3431_TMUAki_TMT10x_P_F4 47.198 28.886 112050 168220 3989 151330 143480 205550 125550 106250 120570 113950 128040 104360 156910 13448 156390 137360 203830 128130 113270 123140 110970 123290 1 1 1 1 1 1 1 1 1 1 1 112050 168220 3989 151330 143480 205550 125550 106250 120570 113950 128040 104360 156910 13448 156390 137360 203830 128130 113270 123140 110970 123290 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1923600 1923600 0 14732 2082 13497 77206 93273 93273 1 NQGGYGGSSSSSSYGSGR Unmodified 1693.6928 0.69281896 583 P09651;P09651-2;P09651-3 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes no 0 0 0 0 By MS/MS 4 0 1 1 26.264 26.318 3 0.0035711 4906 20211116_3431_TMUAki_TMT10x_P_F4 60.528 56.06 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14733 583 13498 77207 93274 93274 1 NQGYYDYVKPR Unmodified 1401.6677 0.66771383 1491 Q02218;Q02218-2 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 0 0 0 1 By MS/MS 7 0 1 1 37.566 38.004 3 1.4581E-07 10553 20211116_3435_TMUAki_TMT10x_P_F7 114.87 96.272 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14734 1491 13499 77208 93275 93275 1 NQIIACNGSIQSIPEIPDDLK Unmodified 2324.1682 0.1682109 791 P23921 RRM1 Ribonucleoside-diphosphate reductase large subunit yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 74.006 73.942 3 3.4155E-05 23660 20211116_3445_TMUAki_TMT10x_S_F6 74.029 59.26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14735 791 13500 77209;77210 93276;93277 93277 2 NQKPEVR Unmodified 869.47191 0.47191456 1448 P83731 RPL24 60S ribosomal protein L24 yes yes 0 0 0 1 By MS/MS 5 0 1 1 24.141 24.064 3 0.087807 4524 20211116_3433_TMUAki_TMT10x_P_F5 41.652 18.129 157980 230400 221.93 184570 154980 259330 173790 142560 143980 133730 191810 147100 214820 13263 192640 149080 256950 174370 150570 149480 130970 183550 1 1 1 1 1 1 1 1 1 1 1 157980 230400 221.93 184570 154980 259330 173790 142560 143980 133730 191810 147100 214820 13263 192640 149080 256950 174370 150570 149480 130970 183550 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8805500 8805500 0 14736 1448 13501 77211 93278 93278 1 NQLDQEVEFLSTSIAQLK Unmodified 2062.0582 0.058249746 2576 Q99471;Q99471-2 PFDN5 Prefoldin subunit 5 yes no 0 0 0 0 By MS/MS By MS/MS 5 1.69 3 2 4 7 5 3 2 14 12 81.43 81.431 2;3;4 2.5735E-50 26665 20211116_3445_TMUAki_TMT10x_S_F6 220.87 197.3 118930000 195960000 675850 174200000 148080000 168290000 155330000 104000000 106110000 114100000 152790000 110730000 182770000 9622400 179160000 142120000 170370000 155650000 109290000 111760000 111020000 145950000 36 36 18 36 36 36 36 36 36 36 36 51320000 84009000 417850 75732000 49308000 90738000 59475000 48198000 48172000 52136000 68540000 47786000 78359000 4422400 78068000 47547000 90556000 59447000 51269000 50224000 50757000 65487000 17 17 10 17 17 17 17 17 17 17 17 67614000 111950000 258000 98464000 98769000 77555000 95852000 55804000 57940000 61969000 84254000 62948000 104410000 5200000 101090000 94576000 79809000 96206000 58020000 61537000 60268000 80463000 19 19 8 19 19 19 19 19 19 19 19 33688000000 16034000000 17654000000 14737 2576 13502 77212;77213;77214;77215;77216;77217;77218;77219;77220;77221;77222;77223;77224;77225;77226;77227;77228;77229;77230;77231;77232;77233;77234;77235;77236;77237 93279;93280;93281;93282;93283;93284;93285;93286;93287;93288;93289;93290;93291;93292;93293;93294;93295;93296;93297;93298;93299;93300;93301;93302;93303;93304;93305;93306;93307;93308;93309;93310;93311;93312;93313;93314;93315;93316 93309 38 NQLSFVMNSLYLATFALK Unmodified 2059.0812 0.081233794 1085 P48995;P48995-2 TRPC1 Short transient receptor potential channel 1 yes no 0 0 0 0 By MS/MS 2 0 1 1 65.502 65.197 3 0.10029 21902 20211116_3429_TMUAki_TMT10x_P_F2 24.041 12.126 1668700 2905500 18164 2759000 2055400 3865700 2250100 2385800 2152800 2179900 2551700 1553800 2710600 160690 2841600 1976800 3836600 2269200 2494200 2208500 2137500 2449200 1 1 1 1 1 1 1 1 1 1 1 1668700 2905500 18164 2759000 2055400 3865700 2250100 2385800 2152800 2179900 2551700 1553800 2710600 160690 2841600 1976800 3836600 2269200 2494200 2208500 2137500 2449200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 520830000 520830000 0 14738 1085 13503 77238 93317 93317 1 NQLTAMSSVLAK Unmodified 1261.67 0.67002202 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 By MS/MS 2 0 1 1 61.549 61.27 2 7.8491E-18 20199 20211116_3429_TMUAki_TMT10x_P_F2 186.02 140.86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14739 1684 13504 77239 93318 93318 1 NQLTAMSSVLAK Oxidation (M) 1277.6649 0.66493664 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 1 0 By MS/MS 8 0 1 1 45.364 45.305 3 0.00075375 11772 20211116_3447_TMUAki_TMT10x_S_F8 78.324 59.224 1793700 3083600 20824 3102100 1677200 1675000 1553900 2889800 2821700 2251400 2847700 1670200 2877400 166480 3142000 1606300 1821700 1621900 2857700 2816100 2225100 2746200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1793700 3083600 20824 3102100 1677200 1675000 1553900 2889800 2821700 2251400 2847700 1670200 2877400 166480 3142000 1606300 1821700 1621900 2857700 2816100 2225100 2746200 1 1 1 1 1 1 1 1 1 1 1 95966000 0 95966000 14740 1684 13504 77240 93319 93319 2256 1 NQLTSNPENTVFDAK Unmodified 1676.8006 0.8005785 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 By MS/MS By MS/MS 4.54 0.929 2 4 5 2 7 6 52.802 52.876 2;3 7.5777E-100 15790 20211116_3433_TMUAki_TMT10x_P_F5 362.88 328.35 49503000 82878000 1370200 101320000 80055000 83126000 53963000 79641000 87501000 67423000 78518000 46102000 77403000 5712300 101790000 76181000 85727000 57139000 80784000 87231000 66352000 76021000 16 16 12 16 16 16 16 16 16 16 16 24051000 39006000 969000 46967000 63077000 65827000 38279000 36939000 42530000 31617000 38726000 22401000 36426000 3396500 47634000 59913000 65248000 40256000 38855000 42946000 31098000 37475000 9 9 6 9 9 9 9 9 9 9 9 25452000 43872000 401210 54351000 16978000 17299000 15683000 42702000 44971000 35806000 39792000 23701000 40976000 2315900 54153000 16268000 20479000 16883000 41928000 44285000 35255000 38546000 7 7 6 7 7 7 7 7 7 7 7 10120000000 5679200000 4440600000 14741 614 13505 77241;77242;77243;77244;77245;77246;77247;77248;77249;77250;77251;77252;77253 93320;93321;93322;93323;93324;93325;93326;93327;93328;93329;93330;93331;93332;93333;93334;93335;93336 93326 17 NQLTSNPENTVFDAKR Unmodified 1832.9017 0.90168952 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 1 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 44.876 44.997 3 1.4413E-81 11747 20211116_3445_TMUAki_TMT10x_S_F6 334.51 305.04 3084800 5366100 33056 4760400 9820700 16167000 6562900 27019000 18747000 13085000 10945000 2872300 5004900 353260 5069800 9334900 16010000 7204500 26506000 18261000 13354000 10799000 4 4 2 4 4 4 4 4 4 4 4 2342100 3813400 33056 3630700 8714900 14764000 5912700 18023000 12879000 8739300 7443800 2180900 3557600 310600 3883300 8287600 14427000 6359700 17882000 12605000 8917700 7349100 3 3 2 3 3 3 3 3 3 3 3 742750 1552800 0 1129700 1105800 1403300 650140 8995800 5867300 4346100 3500800 691380 1447300 42664 1186500 1047300 1583300 844800 8624000 5656700 4436200 3450400 1 1 0 1 1 1 1 1 1 1 1 1281200000 920370000 360820000 14742 614 13506 77254;77255;77256 93337;93338;93339;93340 93340 4 NQNAPDSRPEENFFSR Unmodified 1906.8558 0.85580196 2851 Q9HAU5 UPF2 Regulator of nonsense transcripts 2 yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 37.941 37.829 3 4.9581E-15 12129 20211116_3441_TMUAki_TMT10x_S_F3 147.75 116.54 1720200 2625000 0 2969900 2797900 3041700 1833400 2484000 2797500 1944500 2650300 1601500 2450700 108080 3006500 2657600 3081700 1940000 2537500 2798600 1921300 2561200 2 2 0 2 2 2 2 2 2 2 2 1269600 1805300 0 1995800 2457100 2758500 1568100 1841300 2009400 1314000 1877900 1182000 1685200 108080 2034000 2332800 2742500 1650800 1902600 2020200 1305000 1815600 1 1 0 1 1 1 1 1 1 1 1 450590 819760 0 974090 340730 283220 265320 642700 788090 630550 772410 419540 765500 0 972500 324810 339220 289250 634950 778310 616330 745600 1 1 0 1 1 1 1 1 1 1 1 181410000 127180000 54221000 14743 2851 13507 77257;77258 93341;93342 93342 2 NQPGKYSQLVVETIR Unmodified 1730.9315 0.93153309 2336 Q92522 H1FX Histone H1x yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 51.32 51.314 3 5.2192E-24 14666 20211116_3436_TMUAki_TMT10x_P_F8 190.82 148.5 4265300 8173100 95148 6930500 9112200 10950000 6381000 14047000 10956000 9310400 9304200 3972100 7621800 510180 7218100 8674300 10977000 6757000 13984000 10887000 9288200 9026600 2 2 2 2 2 2 2 2 2 2 2 2131800 4032300 70049 3297600 5255400 8508300 4220400 7438000 5743100 5024100 4832700 1985500 3759800 285770 3493900 5017300 8322300 4382200 7544200 5743700 5006200 4690100 1 1 1 1 1 1 1 1 1 1 1 2133500 4140800 25099 3632900 3856900 2442000 2160600 6609200 5213100 4286300 4471500 1986700 3861900 224410 3724200 3657000 2654900 2374800 6440000 5143600 4281900 4336500 1 1 1 1 1 1 1 1 1 1 1 992130000 576470000 415670000 14744 2336 13508 77259;77260 93343;93344 93343 2 NQPGKYSQLVVETIRR Unmodified 1887.0326 0.032644117 2336 Q92522 H1FX Histone H1x yes yes 0 0 0 2 By MS/MS By MS/MS 2.6 0.49 2 3 2 3 46.585 46.378 3;4 9.2176E-29 14102 20211116_3429_TMUAki_TMT10x_P_F2 186.56 151.38 10353000 17573000 78168 17578000 22669000 25124000 14130000 24705000 18105000 16238000 18757000 9639100 16398000 1009400 18045000 21520000 25120000 14902000 24886000 18268000 16208000 18074000 6 6 3 6 6 6 6 6 6 6 6 7428800 12763000 75152 12537000 18810000 22834000 12302000 18435000 13206000 11686000 13742000 6917100 11908000 794390 12959000 17873000 22528000 12847000 18764000 13414000 11692000 13240000 4 4 2 4 4 4 4 4 4 4 4 2923800 4810400 3016.4 5041800 3859000 2290200 1827700 6270100 4899100 4552000 5014900 2722000 4489500 214970 5086000 3646500 2592200 2055200 6122700 4853700 4516500 4834100 2 2 1 2 2 2 2 2 2 2 2 1565000000 746530000 818440000 14745 2336 13509 77261;77262;77263;77264;77265 93345;93346;93347;93348;93349;93350 93345 6 NQPIYIQYSNHKELK Unmodified 1873.9686 0.96864688 3152;3153 Q9UKA9;Q9UKA9-5;Q9UKA9-2;Q9UKA9-3;Q9UKA9-6;Q9UKA9-4 PTBP2 Polypyrimidine tract-binding protein 2 no no 0 0 0 1 By MS/MS 2 0 1 1 60.096 59.832 3 0.10769 19662 20211116_3429_TMUAki_TMT10x_P_F2 30.961 14.296 2722500 4879700 20088 5047800 4117300 6529500 3715200 4043300 3731600 4207800 3789200 2535000 4553900 263970 5159900 3939000 6504600 3790000 4241300 3797500 4102700 3653600 1 1 1 1 1 1 1 1 1 1 1 2722500 4879700 20088 5047800 4117300 6529500 3715200 4043300 3731600 4207800 3789200 2535000 4553900 263970 5159900 3939000 6504600 3790000 4241300 3797500 4102700 3653600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 766880000 766880000 0 14746 3152;3153 13510 77266 93351 93351 1 NQQIFLR Unmodified 917.5083 0.50830006 1388 P62993;P62993-2 GRB2 Growth factor receptor-bound protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 38.633 39.063 2 0.002726 11277 20211116_3446_TMUAki_TMT10x_S_F7 122.54 51.183 3662700 5871900 66439 6682700 7779800 6087100 4225100 4920900 5449500 4294500 5507400 3410400 5482200 376750 6751300 7371300 6211700 4509500 5043300 5492400 4220100 5311000 5 5 3 5 5 5 5 5 5 5 5 1945200 3127200 49320 3546900 6338700 4698800 2745400 2576100 2959700 2309000 2875500 1811200 2919600 223980 3606000 5987500 4668100 2979300 2718400 2998600 2266000 2776500 2 2 1 2 2 2 2 2 2 2 2 1717500 2744700 17119 3135800 1441200 1388300 1479700 2344700 2489900 1985600 2631900 1599200 2562500 152770 3145300 1383800 1543600 1530200 2324900 2493900 1954000 2534500 3 3 2 3 3 3 3 3 3 3 3 282860000 154120000 128730000 14747 1388 13511 77267;77268;77269;77270 93352;93353;93354;93355;93356 93355 5 NQQITHANNTVSNFKR Unmodified 1870.9398 0.93980636 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 31.965 31.9 4 5.631E-11 8246 20211116_3429_TMUAki_TMT10x_P_F2 134.97 118.03 2028100 3117400 21105 3217700 5619500 4467300 2426000 2390700 2638100 1877600 2945300 1888300 2909200 211580 3294200 5307500 4427300 2634400 2520100 2685500 1854900 2831700 4 4 2 4 4 4 4 4 4 4 4 1827000 2749300 21105 2827300 5412600 4284900 2203100 2045800 2263400 1605300 2570400 1701100 2565600 195520 2900600 5108800 4225000 2404400 2179900 2310900 1586000 2470100 3 3 2 3 3 3 3 3 3 3 3 201110 368100 0 390400 206850 182380 222910 344870 374760 272300 374880 187240 343560 16058 393580 198700 202280 229970 340270 374610 268930 361630 1 1 0 1 1 1 1 1 1 1 1 129980000 108490000 21486000 14748 2345 13512 77271;77272;77273 93357;93358;93359;93360 93358 4 NQSFCPTVNLDK Unmodified 1421.6609 0.66091389 1050 P46776 RPL27A 60S ribosomal protein L27a yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.745 3 2 1 5 1 51.324 51.444 2;3 1.725E-56 15207 20211116_3433_TMUAki_TMT10x_P_F5 284.1 195.05 9440700 16306000 125040 16942000 22617000 24298000 12665000 19687000 17637000 15015000 17224000 8791100 15217000 1083800 17349000 21444000 24196000 13521000 20110000 17710000 14857000 16628000 3 3 3 3 3 3 3 3 3 3 3 6853300 11602000 99968 11731000 20639000 22234000 11114000 13427000 12330000 10734000 11933000 6381800 10826000 854430 12115000 19557000 21805000 11809000 14016000 12476000 10594000 11523000 2 2 2 2 2 2 2 2 2 2 2 2587400 4704100 25072 5211800 1977600 2063700 1551300 6260000 5307500 4280800 5291700 2409300 4391300 229340 5234000 1887000 2390900 1712100 6093700 5234500 4262400 5105200 1 1 1 1 1 1 1 1 1 1 1 1927400000 1249100000 678230000 14749 1050 13513 77274;77275;77276;77277;77278;77279 93361;93362;93363;93364;93365;93366;93367 93362 7 NQSQGYNQWQQGQFWGQK Unmodified 2210.9882 0.98821312 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 59.353 59.237 3 2.4389E-22 17821 20211116_3428_TMUAki_TMT10x_P_F1 156 146.59 2066700 3213400 25997 4654900 1894900 1237700 1917100 1383500 1336500 1327600 2291600 1924500 3003800 193170 4595900 1819000 1474900 1925500 1397600 1418900 1298900 2181100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2066700 3213400 25997 4654900 1894900 1237700 1917100 1383500 1336500 1327600 2291600 1924500 3003800 193170 4595900 1819000 1474900 1925500 1397600 1418900 1298900 2181100 1 1 1 1 1 1 1 1 1 1 1 892730000 360230000 532500000 14750 1474 13514 77280;77281;77282;77283 93368;93369;93370 93368 3 NQTAEKEEFEHQQK Unmodified 1744.8016 0.80164113 615 P11142 HSPA8 Heat shock cognate 71 kDa protein yes yes 0 0 0 1 By MS/MS By MS/MS 3 1.41 1 1 1 1 1 4 1 32.116 32.016 4 2.0156E-37 8277 20211116_3429_TMUAki_TMT10x_P_F2 247.9 189.81 12923000 21891000 222870 22309000 13613000 13367000 13593000 5048500 5583500 5267400 14466000 12034000 20429000 1284700 22595000 13066000 13982000 13541000 5559300 6345900 5135400 13680000 6 6 4 6 6 6 6 6 6 6 6 8920100 15186000 186290 15674000 9950500 11224000 8120200 3610700 3944200 3749900 10280000 8306800 14172000 923500 15889000 9506000 11538000 8203100 4059500 4420000 3656600 9720400 4 4 2 4 4 4 4 4 4 4 4 4002900 6705800 36581 6634800 3663000 2142200 5472900 1437800 1639300 1517500 4186200 3727400 6256900 361200 6706400 3559900 2443600 5338100 1499800 1925900 1478800 3959400 2 2 2 2 2 2 2 2 2 2 2 2093500000 1735200000 358290000 14751 615 13515 77284;77285;77286;77287;77288 93371;93372;93373;93374;93375;93376 93372 6 NQTAEKEEFEHQQKELEK Unmodified 2244.0659 0.065854319 615 P11142 HSPA8 Heat shock cognate 71 kDa protein yes yes 0 0 0 2 By MS/MS By MS/MS 4 0.816 1 1 1 1 2 38.112 38.084 5 3.121E-51 8715 20211116_3444_TMUAki_TMT10x_S_F5 236.95 209.45 5925400 10095000 53029 9013000 36150000 30656000 14946000 33163000 26495000 18845000 20889000 5517200 9415600 926810 9594800 34130000 29951000 16626000 33163000 26250000 18995000 20324000 6 6 3 6 6 6 6 6 6 6 6 3836800 6336700 51942 5654400 34073000 28374000 13435000 22140000 17771000 12511000 13764000 3572600 5910300 767270 6156300 32154000 27364000 14841000 22537000 17747000 12616000 13401000 3 3 2 3 3 3 3 3 3 3 3 2088600 3758200 1086.6 3358600 2076700 2281500 1510300 11023000 8723800 6333200 7125400 1944600 3505300 159550 3438400 1976100 2587100 1784900 10626000 8502600 6378500 6923100 3 3 1 3 3 3 3 3 3 3 3 1014900000 745160000 269760000 14752 615 13516 77289;77290;77291 93377;93378;93379;93380;93381;93382 93381 6 NQVALNPQNTVFDAK Unmodified 1657.8424 0.84238373 596 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 0 0 By MS/MS By MS/MS 6.25 0.661 1 4 3 5 3 55.56 55.891 2;3 9.7533E-61 15799 20211116_3434_TMUAki_TMT10x_P_F6 303.36 280.89 35405000 59218000 259380 64134000 58432000 72983000 43761000 58685000 59603000 53112000 56355000 32966000 55275000 3291000 65212000 55661000 73483000 45646000 60222000 59828000 52102000 54465000 8 8 4 8 8 8 8 8 8 8 8 22308000 36603000 229690 39052000 45895000 60461000 33978000 36494000 37414000 34233000 34582000 20771000 34163000 2257500 39987000 43712000 59734000 35195000 38247000 37812000 33527000 33448000 5 5 2 5 5 5 5 5 5 5 5 13097000 22616000 29686 25082000 12537000 12522000 9782900 22191000 22189000 18879000 21773000 12194000 21112000 1033500 25225000 11949000 13749000 10451000 21975000 22016000 18574000 21017000 3 3 2 3 3 3 3 3 3 3 3 9472800000 5033900000 4438900000 14753 596 13517 77292;77293;77294;77295;77296;77297;77298;77299 93383;93384;93385;93386;93387;93388;93389;93390;93391 93385 9 NQVALNPQNTVFDAKR Unmodified 1813.9435 0.94349476 596 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 0 1 By MS/MS By MS/MS 5 3.29 2 1 2 3 2 47.347 47.414 3 2.0144E-47 12561 20211116_3447_TMUAki_TMT10x_S_F8 254.38 233.03 8513800 18355000 53752 15645000 20228000 24555000 12373000 49281000 39309000 28160000 26688000 7927100 17117000 657380 16286000 19198000 25021000 13795000 48225000 38363000 28373000 26135000 9 9 4 9 9 9 9 9 9 9 9 3595200 7149800 36125 6603300 12712000 17297000 8505000 16949000 14416000 10497000 9981400 3347500 6669500 427620 6934900 12084000 16953000 9030000 17057000 14250000 10518000 9766000 5 5 3 5 5 5 5 5 5 5 5 4918600 11205000 17627 9042200 7515700 7257700 3868300 32332000 24893000 17663000 16706000 4579700 10448000 229760 9350600 7114400 8067200 4765300 31168000 24114000 17855000 16370000 4 4 1 4 4 4 4 4 4 4 4 3676200000 1805000000 1871200000 14754 596 13518 77300;77301;77302;77303;77304 93392;93393;93394;93395;93396;93397;93398;93399;93400 93399 9 NQVAMNPTNTVFDAK Oxidation (M) 1664.7828 0.78281994 615 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 1 0 By MS/MS By MS/MS 5.19 1.29 2 3 4 4 3 9 7 47.257 47.452 2;3 9.8338E-19 12730 20211116_3445_TMUAki_TMT10x_S_F6 161.33 135.39 70257000 116870000 337380 147200000 117890000 115160000 74137000 112330000 145230000 84110000 123090000 65411000 109170000 5464800 147550000 111900000 119230000 79689000 113510000 143850000 83308000 119430000 24 24 11 24 24 24 24 24 24 24 24 29312000 48718000 238950 61504000 90516000 86715000 48279000 45148000 59193000 34655000 52800000 27292000 45507000 2728900 62218000 85721000 85851000 51518000 47687000 59514000 34278000 51132000 11 11 7 11 11 11 11 11 11 11 11 40944000 68154000 98433 85698000 27370000 28441000 25858000 67180000 86039000 49455000 70292000 38119000 63660000 2735900 85331000 26175000 33376000 28171000 65818000 84337000 49030000 68296000 13 13 4 13 13 13 13 13 13 13 13 22695000000 15647000000 7048000000 14755 615 13519 77305;77306;77307;77308;77309;77310;77311;77312;77313;77314;77315;77316;77317;77318;77319;77320 93401;93402;93403;93404;93405;93406;93407;93408;93409;93410;93411;93412;93413;93414;93415;93416;93417;93418;93419;93420;93421;93422;93423;93424;93425 93422 620 25 NQVAMNPTNTVFDAK Unmodified 1648.7879 0.78790532 615 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.667 1 4 4 5 4 54.269 54.611 2;3 4.7702E-85 15685 20211116_3445_TMUAki_TMT10x_S_F6 342.32 263.39 82271000 136730000 253710 172080000 135410000 103390000 93285000 53123000 45225000 54076000 103930000 76599000 127710000 7155100 172030000 128750000 108440000 95338000 56577000 50195000 52774000 98436000 11 11 5 11 11 11 11 11 11 11 11 47270000 79053000 157380 100160000 112050000 84732000 75486000 31649000 26985000 30870000 60186000 44012000 73844000 4652000 100460000 106510000 86078000 76979000 34835000 30753000 30181000 57031000 7 7 4 7 7 7 7 7 7 7 7 35001000 57676000 96324 71916000 23354000 18660000 17799000 21473000 18240000 23206000 43740000 32587000 53871000 2503100 71564000 22238000 22358000 18359000 21742000 19441000 22593000 41405000 4 4 1 4 4 4 4 4 4 4 4 17481000000 9853400000 7627900000 14756 615 13519 77321;77322;77323;77324;77325;77326;77327;77328;77329 93426;93427;93428;93429;93430;93431;93432;93433;93434;93435;93436 93434 11 NQVAMNPTNTVFDAKR Oxidation (M) 1820.8839 0.88393097 615 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 1 1 By MS/MS By MS/MS 6.08 2.84 3 1 2 7 8 5 39.333 39.554 3;4 4.0994E-15 9154 20211116_3434_TMUAki_TMT10x_P_F6 145.69 135.9 5889300 9917300 143020 10278000 14310000 14773000 8487300 14635000 14905000 9165600 11657000 5484400 9255300 706040 10527000 13581000 14769000 9112200 14723000 14767000 9176900 11345000 15 15 11 15 15 15 15 15 15 15 15 3966000 6514300 121560 6948700 12316000 13131000 7014900 10341000 10927000 6291700 7877200 3693500 6080200 540910 7150600 11682000 12933000 7513800 10534000 10837000 6311600 7693300 10 10 8 10 10 10 10 10 10 10 10 1923300 3403000 21464 3328800 1993900 1641800 1472400 4293800 3977600 2873900 3779500 1790900 3175100 165130 3375900 1899000 1836300 1598400 4189300 3929900 2865300 3652100 5 5 3 5 5 5 5 5 5 5 5 3205200000 2123500000 1081700000 14757 615 13520 77330;77331;77332;77333;77334;77335;77336;77337;77338;77339;77340;77341;77342 93437;93438;93439;93440;93441;93442;93443;93444;93445;93446;93447;93448;93449;93450;93451;93452;93453 93439 620 17 NQVAMNPTNTVFDAKR Unmodified 1804.889 0.88901635 615 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 46.186 46.143 3 6.7356E-60 12539 20211116_3436_TMUAki_TMT10x_P_F8 278.08 225.95 11182000 19462000 74374 17943000 26921000 25496000 19120000 17597000 11839000 13890000 19474000 10411000 18155000 955990 18525000 25618000 25331000 19577000 18179000 12633000 13718000 18550000 5 5 3 5 5 5 5 5 5 5 5 6946100 11956000 70974 11203000 22520000 22080000 16197000 11280000 7647800 8844700 12553000 6467500 11153000 798000 11645000 21434000 21580000 16495000 11941000 8328500 8738500 11958000 3 3 2 3 3 3 3 3 3 3 3 4235400 7506600 3399.6 6739700 4401700 3416900 2922700 6316600 4190800 5044900 6921000 3943600 7001600 157990 6880000 4183600 3751000 3081200 6237900 4304800 4979500 6591900 2 2 1 2 2 2 2 2 2 2 2 2131200000 1586600000 544670000 14758 615 13520 77343;77344;77345;77346 93454;93455;93456;93457;93458 93456 5 NQVDVEIK Unmodified 943.49746 0.4974606 2775 Q9H0H5 RACGAP1 Rac GTPase-activating protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 39.971 40.024 2 0.0017787 13503 20211116_3441_TMUAki_TMT10x_S_F3 107.15 33.906 315720 509710 3435.5 515650 473110 564500 375390 309580 333250 282620 410990 294000 475640 31582 526360 451390 566340 384580 326820 343630 277140 394060 1 1 1 1 1 1 1 1 1 1 1 315720 509710 3435.5 515650 473110 564500 375390 309580 333250 282620 410990 294000 475640 31582 526360 451390 566340 384580 326820 343630 277140 394060 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9496500 9496500 0 14759 2775 13521 77347;77348 93459;93460 93460 2 NQVFEPSCLDAFPNLK Unmodified 1877.8982 0.89818405 839 P28161;P28161-2 GSTM2 Glutathione S-transferase Mu 2 yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 75.876 75.835 3 3.0795E-15 24434 20211116_3445_TMUAki_TMT10x_S_F6 149.22 132.72 5955200 9952300 85610 9255900 6686500 8186100 7593000 5770300 4915700 5833100 7100200 5545600 9283900 583760 9475700 6439300 8351200 7571700 5990600 5195600 5694300 6781700 3 3 3 3 3 3 3 3 3 3 3 1866900 2887200 28183 2787000 1818100 3283000 2083300 1730300 1575400 1829400 2010200 1738500 2693700 180360 2857700 1751700 3279000 2083600 1840600 1640400 1782600 1925700 1 1 1 1 1 1 1 1 1 1 1 4088400 7065000 57428 6468900 4868400 4903100 5509700 4040000 3340300 4003700 5090000 3807100 6590200 403400 6618000 4687600 5072200 5488100 4150100 3555200 3911700 4856000 2 2 2 2 2 2 2 2 2 2 2 1214600000 612620000 601960000 14760 839 13522 77349;77350;77351 93461;93462;93463;93464 93463 4 NQVLVFVHSR Unmodified 1197.6618 0.66184059 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 41.772 41.627 3 5.7977E-10 10720 20211116_3440_TMUAki_TMT10x_S_F2 185.96 158.19 5126100 7704500 289700 9085900 7919400 6858500 5796600 5766900 5878700 5208400 6992000 4775100 7194300 732690 9138200 7557600 7099800 5993200 5901800 6016500 5109800 6710500 6 6 5 6 6 6 6 6 6 6 6 2101000 3114800 101070 3672000 4860400 4223300 2581600 2219800 2401200 2162800 2692700 1957000 2908500 307030 3714900 4609200 4223400 2732200 2356400 2461100 2114600 2588600 2 2 2 2 2 2 2 2 2 2 2 3025100 4589700 188630 5413900 3059100 2635100 3215000 3547100 3477500 3045700 4299300 2818100 4285800 425660 5423300 2948400 2876400 3261000 3545400 3555400 2995200 4121900 4 4 3 4 4 4 4 4 4 4 4 1407600000 770030000 637550000 14761 352 13523 77352;77353;77354;77355;77356;77357 93465;93466;93467;93468;93469;93470;93471 93469 7 NQYVTLHDMILK Oxidation (M) 1489.7599 0.75989966 1307 P61289;P61289-2;P61289-3 PSME3 Proteasome activator complex subunit 3 yes no 0 0 1 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 47.318 47.479 3 2.3627E-05 14903 20211116_3446_TMUAki_TMT10x_S_F7 91.858 67.476 3374200 5977600 39971 6595600 2726800 3221600 2760400 4671500 5210800 4329700 5277000 3142000 5580000 303220 6634500 2617600 3522600 2874100 4666200 5196200 4242700 5088400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3374200 5977600 39971 6595600 2726800 3221600 2760400 4671500 5210800 4329700 5277000 3142000 5580000 303220 6634500 2617600 3522600 2874100 4666200 5196200 4242700 5088400 2 2 1 2 2 2 2 2 2 2 2 142450000 0 142450000 14762 1307 13524 77358;77359;77360 93472;93473;93474;93475 93475 1766 4 NQYVTLHDMILK Unmodified 1473.765 0.76498503 1307 P61289;P61289-2;P61289-3 PSME3 Proteasome activator complex subunit 3 yes no 0 0 0 0 By MS/MS 7 0 1 1 57.05 57.783 3 2.6097E-08 18448 20211116_3435_TMUAki_TMT10x_P_F7 119.69 99.308 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14763 1307 13524 77361 93476 93476 1 NRAEMIDFNIR Oxidation (M) 1393.6772 0.67723266 1262 P57087;P57087-2;P57087-3 JAM2 Junctional adhesion molecule B yes no 0 0 1 1 By MS/MS 5 0 1 1 38.396 38.542 3 0.0053878 8962 20211116_3444_TMUAki_TMT10x_S_F5 64.121 46.39 366490 654930 1843.1 688360 360860 305360 339570 545810 578660 436710 592340 341250 611240 32023 694150 345590 340110 352950 539540 578710 431010 570980 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 366490 654930 1843.1 688360 360860 305360 339570 545810 578660 436710 592340 341250 611240 32023 694150 345590 340110 352950 539540 578710 431010 570980 1 1 1 1 1 1 1 1 1 1 1 53981000 0 53981000 14764 1262 13525 77362 93477 93477 1705 1 NRAEQLASVQYTLPK Unmodified 1716.9159 0.91588303 1537 Q07157;Q07157-2 TJP1 Tight junction protein ZO-1 yes no 0 0 0 1 By MS/MS 8 0 1 1 47.894 47.801 3 7.8882E-07 12744 20211116_3447_TMUAki_TMT10x_S_F8 101.53 83.163 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14765 1537 13526 77363 93478 93478 1 NRDNDPNDYVEQDDILIVK Unmodified 2274.0764 0.076419005 731 P19387 POLR2C DNA-directed RNA polymerase II subunit RPB3 yes yes 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 59.764 59.617 3 1.5985E-16 18254 20211116_3440_TMUAki_TMT10x_S_F2 144.17 133.51 2085100 3091400 0 3245200 2305700 3818500 2156200 2125900 2028900 2094400 2350900 1941300 2885100 153530 3308300 2205600 3816600 2191000 2245900 2081100 2046800 2257800 1 1 0 1 1 1 1 1 1 1 1 2085100 3091400 0 3245200 2305700 3818500 2156200 2125900 2028900 2094400 2350900 1941300 2885100 153530 3308300 2205600 3816600 2191000 2245900 2081100 2046800 2257800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 526040000 363860000 162180000 14766 731 13527 77364;77365;77366;77367 93479;93480;93481 93481 3 NREELGFRPEYSASQLK Unmodified 2023.0123 0.012302606 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 2 By MS/MS By MS/MS 5.87 1.2 2 4 5 2 2 7 8 41.133 41.283 3;4;5 7.5769E-61 11593 20211116_3433_TMUAki_TMT10x_P_F5 293.35 195.91 34212000 61668000 529220 69845000 75577000 90221000 52819000 63035000 63065000 51277000 58948000 31859000 57574000 3869900 70981000 71924000 90043000 55083000 65109000 63563000 50564000 56992000 19 19 15 19 19 19 19 19 19 19 19 27253000 49782000 426340 56272000 70213000 84740000 48090000 51940000 51806000 42159000 48154000 25378000 46476000 3250200 57374000 66793000 83835000 50051000 54171000 52411000 41578000 46566000 9 9 8 9 9 9 9 9 9 9 9 6959300 11886000 102880 13573000 5363900 5480600 4728900 11095000 11259000 9117500 10793000 6480300 11098000 619740 13607000 5131400 6208600 5032100 10938000 11152000 8986000 10426000 10 10 7 10 10 10 10 10 10 10 10 15312000000 11305000000 4007200000 14767 586 13528 77368;77369;77370;77371;77372;77373;77374;77375;77376;77377;77378;77379;77380;77381;77382 93482;93483;93484;93485;93486;93487;93488;93489;93490;93491;93492;93493;93494;93495;93496;93497;93498;93499;93500 93483 19 NREILDESLR Unmodified 1243.6521 0.65206377 2301 Q8WUM4;Q8WUM4-2 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 35.216 34.976 3 6.0767E-09 9538 20211116_3429_TMUAki_TMT10x_P_F2 127.78 90.432 1377700 2155300 14369 2469600 1329900 1226100 1511300 1879800 2087000 1505200 2229400 1282900 2012300 126940 2478600 1280600 1340400 1541400 1867000 2103100 1485500 2146200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1377700 2155300 14369 2469600 1329900 1226100 1511300 1879800 2087000 1505200 2229400 1282900 2012300 126940 2478600 1280600 1340400 1541400 1867000 2103100 1485500 2146200 2 2 2 2 2 2 2 2 2 2 2 70459000 0 70459000 14768 2301 13529 77383;77384 93501;93502;93503 93501 3 NREPLMPSPQFIK Oxidation (M) 1571.813 0.81299786 386 O94826 TOMM70A Mitochondrial import receptor subunit TOM70 yes yes 0 0 1 1 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 43.013 43.259 3 0.0001083 12628 20211116_3435_TMUAki_TMT10x_P_F7 94.717 64.713 2229100 3837800 25126 4560400 3977800 4513500 2492600 4033400 4115000 3111400 3655100 2075700 3583700 232720 4600600 3778300 4590100 2656200 4097500 4099000 3076800 3540200 2 2 2 2 2 2 2 2 2 2 2 1273300 2106900 1877.6 2430300 3108900 3742600 1632400 2145400 2319200 1756300 1992500 1185600 1967200 133030 2476100 2944000 3695900 1754300 2250300 2317700 1731300 1932200 1 1 1 1 1 1 1 1 1 1 1 955760 1730900 23248 2130000 868900 770830 860240 1888000 1795800 1355200 1662600 890080 1616600 99689 2124500 834330 894210 901990 1847200 1781200 1345500 1608000 1 1 1 1 1 1 1 1 1 1 1 362340000 191710000 170630000 14769 386 13530 77385;77386 93504;93505 93504 297 2 NREPLMPSPQFIK Unmodified 1555.8181 0.81808324 386 O94826 TOMM70A Mitochondrial import receptor subunit TOM70 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 1 1 1 1 51.721 51.44 3 0.00017874 16699 20211116_3439_TMUAki_TMT10x_S_F1 88.075 53.188 1907000 3121600 10143 3368500 2079300 1438300 1684000 2401500 2132200 2360000 2565000 1775700 2913700 169970 3390100 1984400 1605900 1742700 2391800 2164900 2306600 2461000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1907000 3121600 10143 3368500 2079300 1438300 1684000 2401500 2132200 2360000 2565000 1775700 2913700 169970 3390100 1984400 1605900 1742700 2391800 2164900 2306600 2461000 1 1 1 1 1 1 1 1 1 1 1 133510000 0 133510000 14770 386 13530 77387;77388 93506;93507 93507 2 NREPVQLETLSIR Unmodified 1553.8526 0.85255449 1353 P62314 SNRPD1 Small nuclear ribonucleoprotein Sm D1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.6 1.02 2 2 4 2 6 4 43.786 43.847 2;3 2.1854E-50 12177 20211116_3433_TMUAki_TMT10x_P_F5 272.65 204.42 41040000 69375000 478230 78184000 77804000 72409000 52169000 60668000 71250000 53786000 70462000 38214000 64767000 4163300 79052000 73974000 73858000 54849000 62070000 71621000 52813000 67996000 14 14 12 14 14 14 14 14 14 14 14 21382000 36188000 285210 40680000 62259000 57362000 35338000 31840000 36477000 26782000 35335000 19909000 33784000 2465600 41433000 59028000 56834000 37288000 33510000 37018000 26365000 34122000 7 7 6 7 7 7 7 7 7 7 7 19658000 33187000 193020 37504000 15546000 15048000 16832000 28828000 34773000 27004000 35127000 18305000 30983000 1697800 37619000 14946000 17025000 17561000 28560000 34603000 26448000 33874000 7 7 6 7 7 7 7 7 7 7 7 16013000000 8258400000 7754500000 14771 1353 13531 77389;77390;77391;77392;77393;77394;77395;77396;77397;77398 93508;93509;93510;93511;93512;93513;93514;93515;93516;93517;93518;93519;93520;93521;93522;93523 93513 16 NRESYEVSLTQK Unmodified 1452.7209 0.72087161 2998 Q9NX40 OCIAD1 OCIA domain-containing protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 36.411 36.469 3 6.1757E-12 9300 20211116_3433_TMUAki_TMT10x_P_F5 167.59 122.51 6028300 8881500 112180 9505800 10082000 8148400 6583400 4502600 5119200 4522000 7596000 5613800 8289700 661110 9633100 9586200 8302800 6815400 4762500 5359900 4415600 7250900 3 3 3 3 3 3 3 3 3 3 3 4714100 6639600 92673 7071000 8139100 6798800 4594800 3453600 3979800 3565800 5691800 4389900 6197000 525170 7179000 7720600 6867800 4827000 3683600 4136400 3477900 5437700 2 2 2 2 2 2 2 2 2 2 2 1314200 2241900 19507 2434800 1943200 1349600 1988600 1049000 1139400 956190 1904200 1223800 2092600 135950 2454100 1865500 1435100 1988500 1078900 1223500 937690 1813200 1 1 1 1 1 1 1 1 1 1 1 622040000 457030000 165000000 14772 2998 13532 77399;77400;77401 93524;93525;93526 93525 3 NRETASELLMR Oxidation (M) 1334.6612 0.66124824 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 1 1 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 32.737 32.832 3 0.0002677 7524 20211116_3431_TMUAki_TMT10x_P_F4 90.697 64.578 557070 907910 2971 1064600 1390300 1159900 747390 738900 883800 590320 888530 518650 847760 52336 1076400 1316500 1166300 795940 768060 893310 582660 856980 2 2 1 2 2 2 2 2 2 2 2 413140 670460 0 787210 1269500 1045800 608260 625480 777150 477850 701940 384610 626040 37958 798700 1200100 1040000 656790 652740 780550 472780 679460 1 1 0 1 1 1 1 1 1 1 1 143930 237450 2971 277360 120800 114050 139120 113420 106650 112470 186590 134040 221720 14378 277700 116470 126240 139160 115320 112760 109880 177520 1 1 1 1 1 1 1 1 1 1 1 77186000 72125000 5060500 14773 1475 13533 77402;77403 93527;93528 93527 1999 2 NRFGAQQDTIEVPEK Unmodified 1730.8588 0.85876208 1114 P49736 MCM2 DNA replication licensing factor MCM2 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 41.776 41.921 3 8.8355E-05 11487 20211116_3433_TMUAki_TMT10x_P_F5 83.292 67.72 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14774 1114 13534 77404;77405 93529;93530 93529 2 NRGFCFLEYEDHK Unmodified 1713.7569 0.75693954 271;272;211 O60506;O60506-2;O60506-3;O60506-4;O60506-5;O43390;O43390-2;O43390-3;O43390-4 SYNCRIP;HNRNPR Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R no no 0 0 0 1 By MS/MS By MS/MS 6.14 1.25 1 1 2 2 1 2 5 46.628 46.853 4 1.3219E-22 12238 20211116_3444_TMUAki_TMT10x_S_F5 203.87 176.23 10640000 17930000 59643 20647000 16402000 14209000 10619000 17198000 16691000 13673000 15839000 9907300 16741000 966340 20775000 15581000 14940000 11262000 17230000 16684000 13499000 15306000 6 6 4 6 6 6 6 6 6 6 6 3380200 6315200 37345 7414200 7692200 8866200 5238400 6033700 6012700 4528200 5247400 3147600 5896800 375440 7507800 7316200 8879100 5465800 6232500 6055900 4484500 5085700 2 2 2 2 2 2 2 2 2 2 2 7260200 11615000 22298 13233000 8709500 5343200 5380900 11165000 10678000 9144700 10592000 6759700 10844000 590900 13268000 8265300 6060800 5796100 10997000 10628000 9014400 10220000 4 4 2 4 4 4 4 4 4 4 4 3164700000 1329900000 1834800000 14775 271;272;211 13535 77406;77407;77408;77409;77410;77411;77412 93531;93532;93533;93534;93535;93536 93533 6 NRGPPPSWGR Unmodified 1122.5683 0.56827456 1457 P84103;P84103-2 SRSF3 Serine/arginine-rich splicing factor 3 yes no 0 0 0 1 By MS/MS By MS/MS 1.44 0.685 6 2 1 3 6 26.814 26.808 2;3 3.1579E-14 8309 20211116_3441_TMUAki_TMT10x_S_F3 224.13 193.95 1446600 2295300 3595 2146200 2264300 2244800 1788400 1150100 1171400 1261300 1868700 1346900 2141200 129600 2201500 2159100 2256100 1819800 1227900 1243500 1227300 1781100 9 9 4 9 9 9 9 9 9 9 9 1007500 1555700 3381.4 1433600 1753900 1821500 1244200 826510 836800 902340 1242700 938120 1451100 93762 1476900 1669000 1809400 1276100 892820 883530 878150 1186200 5 5 3 5 5 5 5 5 5 5 5 439040 739660 213.59 712590 510360 423250 544220 323610 334630 358980 626010 408780 690080 35834 724550 490110 446790 543770 335120 359940 349140 594870 4 4 1 4 4 4 4 4 4 4 4 166200000 75242000 90953000 14776 1457 13536 77413;77414;77415;77416;77417;77418;77419;77420;77421 93537;93538;93539;93540;93541;93542;93543;93544;93545 93545 9 NRHPNFLVVEK Unmodified 1351.7361 0.73606817 1869 Q16864;Q16864-2 ATP6V1F V-type proton ATPase subunit F yes no 0 0 0 1 By matching By MS/MS 1 0 2 1 1 36.336 36.306 4 0.0016762 10533 20211116_3439_TMUAki_TMT10x_S_F1 78.488 42.529 448110 777610 8377.3 897140 453130 413820 472900 487400 541990 425220 685510 417300 726040 45029 899560 435490 453040 480790 489980 553450 417860 656840 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 448110 777610 8377.3 897140 453130 413820 472900 487400 541990 425220 685510 417300 726040 45029 899560 435490 453040 480790 489980 553450 417860 656840 1 1 1 1 1 1 1 1 1 1 1 53611000 26800000 26811000 14777 1869 13537 77422;77423 93546 93546 1 NRLEEVSPNLVR Unmodified 1424.7736 0.77357588 842 P28331;P28331-3;P28331-4;P28331-5;P28331-2 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 37.263 37.338 3 1.9328E-15 8403 20211116_3444_TMUAki_TMT10x_S_F5 190.37 156.28 1633000 2603800 19072 3159200 2241500 2017200 1667900 1706300 1772800 1568400 2122500 1520500 2431700 154800 3166600 2135600 2118400 1725100 1746400 1811300 1537500 2036700 3 3 2 3 3 3 3 3 3 3 3 681830 1133200 14352 1359600 1518700 1318200 885760 699600 835580 754530 916310 634960 1058200 81625 1370400 1441200 1331600 930000 744170 855120 734650 881430 1 1 1 1 1 1 1 1 1 1 1 951120 1470600 4720.3 1799500 722810 698960 782180 1006700 937220 813880 1206200 885570 1373500 73175 1796100 694400 786850 795090 1002300 956220 802830 1155200 2 2 1 2 2 2 2 2 2 2 2 212890000 124200000 88687000 14778 842 13538 77424;77425 93547;93548;93549 93549 3 NRLENDGATALAEAFR Unmodified 1746.8649 0.86491009 1040 P46060 RANGAP1 Ran GTPase-activating protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 3.78 0.916 1 2 4 2 5 4 54.484 54.448 2;3 5.7896E-51 16121 20211116_3431_TMUAki_TMT10x_P_F4 241.07 206.29 39589000 66539000 300790 65777000 53680000 64047000 46568000 60135000 57800000 53389000 57476000 36862000 62086000 3234800 67132000 51298000 65266000 47955000 61137000 58298000 52421000 55455000 13 13 8 13 13 13 13 13 13 13 13 21226000 34323000 98990 36300000 32705000 46304000 28190000 30135000 28723000 27257000 29955000 19764000 32035000 1594200 37042000 31246000 46191000 28847000 31369000 29241000 26739000 28859000 7 7 4 7 7 7 7 7 7 7 7 18363000 32216000 201800 29477000 20975000 17743000 18377000 30000000 29077000 26132000 27520000 17098000 30051000 1640600 30089000 20052000 19074000 19108000 29768000 29057000 25681000 26596000 6 6 4 6 6 6 6 6 6 6 6 8509000000 4116500000 4392500000 14779 1040 13539 77426;77427;77428;77429;77430;77431;77432;77433;77434 93550;93551;93552;93553;93554;93555;93556;93557;93558;93559;93560;93561;93562;93563;93564 93555 15 NRLQQELDDLTVDLDHQR Unmodified 2207.0931 0.093072122 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 63.623 63.423 4 3.3503E-17 21106 20211116_3429_TMUAki_TMT10x_P_F2 147.09 118.79 32835000 54922000 64647 57262000 34386000 48496000 41757000 41260000 41850000 44312000 47694000 30569000 51257000 2369600 58120000 33132000 49783000 41973000 42407000 42779000 43152000 45828000 5 5 1 5 5 5 5 5 5 5 5 9877000 15874000 0 17008000 13489000 21400000 13447000 12006000 12131000 12436000 14059000 9195800 14816000 789690 17336000 12928000 21319000 13601000 12694000 12467000 12128000 13502000 2 2 0 2 2 2 2 2 2 2 2 22958000 39048000 64647 40254000 20897000 27096000 28310000 29254000 29719000 31876000 33635000 21373000 36441000 1579900 40784000 20204000 28464000 28372000 29713000 30311000 31024000 32325000 3 3 1 3 3 3 3 3 3 3 3 3204200000 1903600000 1300600000 14780 935 13540 77435;77436;77437;77438 93565;93566;93567;93568;93569 93566 5 NRNELAETLALLK Unmodified 1483.8358 0.83584179 2561 Q96T23;Q96T23-2 RSF1 Remodeling and spacing factor 1 yes no 0 0 0 1 By MS/MS 7.5 0.5 1 1 2 66.531 66.886 3 5.4128E-06 21061 20211116_3436_TMUAki_TMT10x_P_F8 103.14 68.452 10933000 17367000 0 16951000 14351000 21539000 15623000 11455000 10071000 11162000 14069000 10179000 16204000 874700 17391000 13787000 21433000 15609000 12147000 10630000 10913000 13448000 2 2 0 2 2 2 2 2 2 2 2 10933000 17367000 0 16951000 14351000 21539000 15623000 11455000 10071000 11162000 14069000 10179000 16204000 874700 17391000 13787000 21433000 15609000 12147000 10630000 10913000 13448000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1588600000 1588600000 0 14781 2561 13541 77439;77440 93570;93571 93571 2 NRPAPYSRPK Unmodified 1184.6414 0.6414395 2113 Q86V81 ALYREF THO complex subunit 4 yes yes 0 0 0 2 By MS/MS By MS/MS 2.14 0.639 1 4 2 3 4 24.329 24.198 3;4 8.9011E-06 7256 20211116_3441_TMUAki_TMT10x_S_F3 139.86 114.3 1300100 2095300 11037 1759900 1614800 1963000 1584100 1170100 1388400 1183300 1630400 1210600 1953900 116520 1822100 1547800 1969500 1602300 1230100 1429600 1155100 1565300 4 4 1 4 4 4 4 4 4 4 4 894420 1351400 0 1210300 1095800 1508500 1003500 826900 934750 825000 1090600 832770 1260500 73737 1249200 1048200 1503000 1020600 875080 959490 805820 1047200 2 2 0 2 2 2 2 2 2 2 2 405720 743880 11037 549530 518930 454580 580570 343190 453650 358270 539790 377830 693400 42785 572920 499620 466450 581740 355010 470120 349280 518050 2 2 1 2 2 2 2 2 2 2 2 164210000 73118000 91091000 14782 2113 13542 77441;77442;77443;77444;77445;77446;77447 93572;93573;93574;93575 93574 4 NRPDYVSEEEEDDEDFETAVK Unmodified 2515.0511 0.051051695 1122 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 0 0 0 1 By MS/MS 1 0 1 1 51.397 51.397 3 5.7084E-45 14621 20211116_3428_TMUAki_TMT10x_P_F1 215.98 203.05 2871000 5337000 0 5051900 5180900 8483300 4831600 4215900 4611000 3943200 4306400 2673100 4979000 259210 5225200 4958200 8334600 4912400 4493600 4689700 3862400 4163600 2 2 0 2 2 2 2 2 2 2 2 2871000 5337000 0 5051900 5180900 8483300 4831600 4215900 4611000 3943200 4306400 2673100 4979000 259210 5225200 4958200 8334600 4912400 4493600 4689700 3862400 4163600 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 225190000 225190000 0 14783 1122 13543 77448 93576;93577 93577 2 NRPEDYQGGR Unmodified 1190.5428 0.54284767 1769 Q15084;Q15084-5;Q15084-3;Q15084-4;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 1 By MS/MS 3 0 1 1 25.051 24.751 3 0.040508 7049 20211116_3441_TMUAki_TMT10x_S_F3 50.194 32.33 19428 51367 1580.1 33809 25508 28678 37758 23874 21308 22183 31623 18101 47865 3168.4 35654 24862 29424 37150 24466 22763 21735 30186 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19428 51367 1580.1 33809 25508 28678 37758 23874 21308 22183 31623 18101 47865 3168.4 35654 24862 29424 37150 24466 22763 21735 30186 1 1 1 1 1 1 1 1 1 1 1 870090 0 870090 14784 1769 13544 77449 93578 93578 1 NRPLSDEELDAMFPEGYK Oxidation (M) 2125.9626 0.9626348 345 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 1 1 By MS/MS By MS/MS 3.62 0.696 4 3 1 3 5 54.18 54.083 3;4 3.705E-15 16516 20211116_3442_TMUAki_TMT10x_S_F4 127.88 117.25 16842000 31571000 329670 28186000 23213000 30262000 19889000 30370000 30057000 28028000 27675000 15684000 29446000 1716500 29024000 22190000 30703000 20663000 30802000 30048000 27470000 26771000 8 8 5 8 8 8 8 8 8 8 8 7673600 14300000 48424 12287000 12247000 20666000 11692000 13259000 13651000 12687000 12567000 7144700 13336000 682610 12802000 11728000 20370000 11949000 13838000 13763000 12414000 12156000 3 3 1 3 3 3 3 3 3 3 3 9168700 17271000 281240 15899000 10966000 9596000 8197300 17111000 16406000 15341000 15108000 8538900 16111000 1033900 16222000 10461000 10333000 8713800 16965000 16285000 15056000 14615000 5 5 4 5 5 5 5 5 5 5 5 3847000000 1658200000 2188800000 14785 345 13545 77450;77451;77452;77453;77454;77455;77456;77457 93579;93580;93581;93582;93583;93584;93585;93586;93587;93588 93586 255 10 NRPLSDEELDAMFPEGYK Unmodified 2109.9677 0.96772018 345 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0 2 1 1 64.562 64.194 3 4.5859E-05 21911 20211116_3430_TMUAki_TMT10x_P_F3 82.121 71.333 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14786 345 13545 77458;77459 93589;93590 93589 2 NRPPFGQGYTQPGPGYR Unmodified 1890.9125 0.91252898 2360 Q92734;Q92734-2 TFG Protein TFG yes no 0 0 0 1 By MS/MS By MS/MS 1.8 0.748 2 2 1 3 2 36.279 36.145 3 1.3019E-80 8426 20211116_3428_TMUAki_TMT10x_P_F1 318.32 289.77 1635400 2833000 49145 3316300 3074600 2944700 2073100 2560200 2684800 2128200 2660400 1523100 2645300 192110 3343500 2925300 3014100 2174100 2609500 2703700 2096300 2567200 4 4 3 4 4 4 4 4 4 4 4 1005800 1744600 38839 2104300 2534200 2370300 1570700 1678700 1697000 1354800 1692600 936680 1629300 131550 2125300 2407500 2382700 1647500 1732000 1720700 1336600 1632900 2 2 1 2 2 2 2 2 2 2 2 629680 1088300 10305 1212100 540360 574420 502350 881420 987830 773360 967820 586370 1016000 60558 1218200 517790 631410 526570 877440 982990 759760 934240 2 2 2 2 2 2 2 2 2 2 2 645070000 440260000 204810000 14787 2360 13546 77460;77461;77462;77463;77464 93591;93592;93593;93594;93595 93591 5 NRPPHVCPECGGNFLQANFQTHLR Unmodified 2848.3398 0.33981831 2186 Q8N1G0;Q8N1G0-2 ZNF687 Zinc finger protein 687 yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 44.145 43.997 5 6.2721E-12 13126 20211116_3429_TMUAki_TMT10x_P_F2 119.16 106.36 2018300 3222700 95281 3658400 3466100 3548900 2730800 2784400 2664200 2389600 2990500 1879800 3008800 257670 3699800 3309500 3604900 2806400 2857800 2724900 2350100 2874700 2 2 1 2 2 2 2 2 2 2 2 1268400 1909600 95281 2225700 2687900 2833300 1842100 1728600 1707400 1507000 1794100 1181700 1783000 213840 2257300 2561800 2824100 1908500 1806600 1745900 1481000 1728000 1 1 1 1 1 1 1 1 1 1 1 749870 1313200 0 1432700 778260 715560 888770 1055800 956870 882620 1196400 698060 1225800 43834 1442400 747790 780850 897840 1051100 978970 869150 1146700 1 1 0 1 1 1 1 1 1 1 1 735620000 548980000 186640000 14788 2186 13547 77465;77466 93596;93597 93596 2 NRPPLPAGTNSK Unmodified 1250.6731 0.67313356 1006;1007 P42166;P42167;P42167-2;P42167-3 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 30.723 30.666 3 1.3195E-19 6244 20211116_3428_TMUAki_TMT10x_P_F1 225.26 185.32 1438900 2561600 15556 1990700 2179700 2213800 2088800 1477600 1649800 1444100 2140900 1339800 2388100 144160 2074500 2088600 2225000 2109900 1538500 1715000 1411800 2050000 3 3 3 3 3 3 3 3 3 3 3 763250 1319400 10655 1097300 1356300 1520000 1064400 773800 909080 753330 1113700 710740 1230300 81515 1141400 1293800 1505700 1090100 823800 938890 736590 1068100 2 2 2 2 2 2 2 2 2 2 2 675610 1242100 4900.6 893370 823310 693800 1024400 703840 740720 690790 1027100 629100 1157700 62649 933030 794780 719330 1019800 714720 776130 675200 981940 1 1 1 1 1 1 1 1 1 1 1 352530000 209350000 143180000 14789 1006;1007 13548 77467;77468;77469 93598;93599;93600 93598 3 NRPSSGSLIQVVTTEGR Unmodified 1799.949 0.94897407 573 P09417;P09417-2 QDPR Dihydropteridine reductase yes no 0 0 0 1 By MS/MS By MS/MS 5.5 2.69 2 2 2 2 4 4 43.287 43.459 3 4.3681E-53 11376 20211116_3428_TMUAki_TMT10x_P_F1 268.6 248.22 10746000 18112000 82616 20457000 17921000 20893000 12450000 16755000 17550000 14298000 16282000 10006000 16909000 800610 20710000 17049000 21164000 13072000 17171000 17586000 14066000 15746000 9 9 5 9 9 9 9 9 9 9 9 6571500 10793000 36378 11855000 14380000 17769000 9485600 10549000 11159000 8845900 9786800 6118800 10075000 432960 12108000 13666000 17575000 9929400 11039000 11230000 8709500 9483400 4 4 2 4 4 4 4 4 4 4 4 4174200 7319000 46239 8601900 3540900 3123900 2964300 6206000 6391300 5452300 6495300 3886800 6834200 367650 8602800 3382600 3589500 3143100 6131800 6355700 5356100 6262600 5 5 3 5 5 5 5 5 5 5 5 6915300000 4164300000 2751000000 14790 573 13549 77470;77471;77472;77473;77474;77475;77476;77477 93601;93602;93603;93604;93605;93606;93607;93608;93609;93610 93601 10 NRPSSGSLIQVVTTEGRTELTPAYF Unmodified 2722.3926 0.39260819 573 P09417;P09417-2 QDPR Dihydropteridine reductase yes no 0 0 0 2 By MS/MS 8 0 1 1 72.267 72.095 3 4.9786E-29 22614 20211116_3447_TMUAki_TMT10x_S_F8 163.18 150.47 2166700 3562000 0 3200400 3461900 2328500 2602600 2275800 2156500 2191700 2678300 2017100 3322400 159480 3277500 3295400 2424700 2671100 2314100 2231900 2144000 2567500 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2166700 3562000 0 3200400 3461900 2328500 2602600 2275800 2156500 2191700 2678300 2017100 3322400 159480 3277500 3295400 2424700 2671100 2314100 2231900 2144000 2567500 2 2 0 2 2 2 2 2 2 2 2 380650000 0 380650000 14791 573 13550 77478 93611;93612 93611 2 NRPTSISWDGLDSGK Unmodified 1631.7903 0.79034816 867 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 0 0 0 1 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 47.525 47.804 3 7.7423E-24 12488 20211116_3434_TMUAki_TMT10x_P_F6 186.72 147.71 33712000 55917000 424690 82007000 66503000 47497000 44690000 23678000 24157000 24368000 49434000 31392000 52274000 3579600 81302000 63239000 49980000 45836000 25297000 26371000 23770000 46905000 9 9 7 9 9 9 9 9 9 9 9 17631000 29327000 225550 42987000 57926000 40299000 35868000 13101000 13795000 13266000 25668000 16417000 27416000 2170800 42849000 54997000 40609000 36852000 14698000 15422000 12950000 24393000 5 5 4 5 5 5 5 5 5 5 5 16081000 26590000 199150 39020000 8577500 7197700 8822700 10577000 10361000 11101000 23766000 14975000 24858000 1408800 38453000 8242400 9371400 8984100 10599000 10949000 10821000 22512000 4 4 3 4 4 4 4 4 4 4 4 3838600000 2606400000 1232100000 14792 867 13551 77479;77480;77481;77482;77483;77484 93613;93614;93615;93616;93617;93618;93619;93620;93621 93615 9 NRVCPPHLK Unmodified 1119.5971 0.59713184 1741 Q14980;Q14980-2;Q14980-5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 29.938 29.883 4 0.0072063 7901 20211116_3439_TMUAki_TMT10x_S_F1 67.563 40.448 600300 961450 15378 927910 1522300 1970500 906880 1465500 782030 588210 868510 559060 897010 77015 964580 1445100 1931800 948200 1489200 804110 610620 835140 3 3 3 3 3 3 3 3 3 3 3 421450 674270 13021 652200 1053700 1380600 614680 955490 529070 414430 615730 392510 629080 55931 677800 1000000 1352000 643800 976730 545060 427050 591290 2 2 2 2 2 2 2 2 2 2 2 178850 287180 2357.1 275720 468680 589910 292200 509970 252960 173780 252770 166550 267930 21084 286780 445100 579780 304400 512470 259060 183570 243850 1 1 1 1 1 1 1 1 1 1 1 34930000 29369000 5561400 14793 1741 13552 77485;77486;77487 93622;93623;93624 93624 3 NRVQNMALYADVGGK Unmodified 1634.8199 0.81987415 1156 P51571 SSR4 Translocon-associated protein subunit delta yes yes 0 0 0 1 By MS/MS 8 0 1 1 45.286 45.423 3 1.3966E-10 12266 20211116_3436_TMUAki_TMT10x_P_F8 139.77 118.93 3952100 6246400 46654 7713400 6756300 6099800 4871200 2590400 2412600 2446300 4381700 3680100 5834000 410410 7741100 6433700 6234700 4963500 2806500 2631800 2395100 4165900 2 2 2 2 2 2 2 2 2 2 2 3952100 6246400 46654 7713400 6756300 6099800 4871200 2590400 2412600 2446300 4381700 3680100 5834000 410410 7741100 6433700 6234700 4963500 2806500 2631800 2395100 4165900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 331350000 331350000 0 14794 1156 13553 77488 93625;93626 93625 2 NRVQNMALYADVGGK Oxidation (M) 1650.8148 0.81478877 1156 P51571 SSR4 Translocon-associated protein subunit delta yes yes 0 0 1 1 By matching By MS/MS 8 0 2 1 1 37.605 37.961 3 0.0054217 8626 20211116_3447_TMUAki_TMT10x_S_F8 60.631 39.842 99148 162160 1232.4 203390 93702 64651 90998 83809 64025 65020 133310 92325 151470 9292.3 202510 89852 74850 91609 83682 68773 64276 126450 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 99148 162160 1232.4 203390 93702 64651 90998 83809 64025 65020 133310 92325 151470 9292.3 202510 89852 74850 91609 83682 68773 64276 126450 1 1 1 1 1 1 1 1 1 1 1 18146000 13029000 5117400 14795 1156 13553 77489;77490 93627 93627 1540 1 NRYQLEIPENFTTR Unmodified 1779.8904 0.89039656 1183 P52701;P52701-3;P52701-4;P52701-2 MSH6 DNA mismatch repair protein Msh6 yes no 0 0 0 1 By matching By MS/MS 5.75 0.829 2 1 1 1 3 50.523 50.773 3 9.8815E-06 16171 20211116_3446_TMUAki_TMT10x_S_F7 101.62 74.994 10403000 17901000 3099.1 19139000 8851400 8091600 7547800 12868000 13025000 11765000 15011000 9684800 16708000 640600 19273000 8441300 9032000 7893800 12809000 13082000 11536000 14419000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10403000 17901000 3099.1 19139000 8851400 8091600 7547800 12868000 13025000 11765000 15011000 9684800 16708000 640600 19273000 8441300 9032000 7893800 12809000 13082000 11536000 14419000 2 2 1 2 2 2 2 2 2 2 2 869260000 260010000 609250000 14796 1183 13554 77491;77492;77493;77494 93628;93629 93629 2 NSAVETVEQELLFVGSETGK Unmodified 2136.0586 0.058643676 3245 Q9Y2R4 DDX52 Probable ATP-dependent RNA helicase DDX52 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 80.401 80.383 3 2.4236E-18 26443 20211116_3428_TMUAki_TMT10x_P_F1 149.53 118.58 3650000 6226600 26159 5848800 3967900 5556600 4478300 3764000 3736400 3834600 4926000 3398600 5808700 318570 5989000 3818200 5638500 4492900 3919500 3875800 3742200 4715100 2 2 1 2 2 2 2 2 2 2 2 1887600 3109000 26159 2852400 1819800 3511600 2134400 2052600 1822200 2032800 2732200 1757800 2900100 179930 2937900 1754400 3503900 2138900 2160000 1899700 1986200 2607400 1 1 1 1 1 1 1 1 1 1 1 1762400 3117600 0 2996400 2148100 2045000 2344000 1711300 1914100 1801800 2193900 1640800 2908600 138640 3051200 2063800 2134500 2354000 1759500 1976000 1756000 2107700 1 1 0 1 1 1 1 1 1 1 1 1264800000 684470000 580300000 14797 3245 13555 77495;77496 93630;93631 93630 2 NSDRTPLVSVLLEGPPHSGK Unmodified 2102.112 0.11201665 1048 P46459;P46459-2 NSF Vesicle-fusing ATPase yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 55.614 55.653 4 9.122E-09 16428 20211116_3436_TMUAki_TMT10x_P_F8 105.91 86.328 11877000 20064000 23831 20403000 15329000 19258000 14420000 14599000 12642000 13009000 16945000 11058000 18723000 998850 20774000 14673000 19585000 14619000 15031000 13091000 12771000 16213000 4 4 2 4 4 4 4 4 4 4 4 6459000 10999000 0 11564000 9361600 14083000 9092200 8325300 7160200 7321400 9154400 6013500 10266000 519750 11795000 8965900 14062000 9176900 8725100 7439600 7191800 8769200 2 2 0 2 2 2 2 2 2 2 2 5418100 9065000 23831 8839300 5967400 5175800 5327500 6273800 5481500 5688000 7790600 5045000 8457700 479100 8978700 5707200 5523400 5442200 6305800 5651700 5579300 7443800 2 2 2 2 2 2 2 2 2 2 2 778810000 390510000 388300000 14798 1048 13556 77497;77498 93632;93633;93634;93635 93633 4 NSEPEEVIPSR Unmodified 1255.6044 0.60444487 1219 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS 1 0 1 1 34.918 34.918 2 8.413E-11 7945 20211116_3428_TMUAki_TMT10x_P_F1 161.27 118.05 129670 183390 0 227450 788210 447820 249220 235220 290320 150080 286340 120670 171280 11039 232220 741640 437840 282250 247330 293410 150080 276340 1 1 0 1 1 1 1 1 1 1 1 129670 183390 0 227450 788210 447820 249220 235220 290320 150080 286340 120670 171280 11039 232220 741640 437840 282250 247330 293410 150080 276340 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36524000 36524000 0 14799 1219 13557 77499 93636 93636 1 NSEPEEVIPSRLDIR Unmodified 1752.9006 0.90062689 1219 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 47.4 47.214 3 1.1984E-09 14514 20211116_3429_TMUAki_TMT10x_P_F2 106.79 65.244 9347500 15068000 139010 16569000 23768000 23372000 15043000 16829000 13382000 12818000 15246000 8704500 14066000 1106500 16898000 22579000 23243000 15664000 17320000 13753000 12684000 14649000 5 5 5 5 5 5 5 5 5 5 5 7429100 11365000 112560 12890000 21422000 21632000 13676000 12256000 9288200 9514000 11793000 6918100 10610000 916800 13173000 20352000 21288000 14141000 12852000 9730000 9404900 11299000 3 3 3 3 3 3 3 3 3 3 3 1918400 3703200 26449 3678500 2346400 1739700 1367800 4572700 4094200 3303800 3452300 1786400 3455400 189690 3725400 2226800 1955500 1523000 4468300 4023100 3278900 3350200 2 2 2 2 2 2 2 2 2 2 2 514510000 321460000 193050000 14800 1219 13558 77500;77501;77502;77503 93637;93638;93639;93640;93641;93642;93643 93637 7 NSEQIVEVGEELINEYASK Unmodified 2150.0379 0.037908234 1749 Q15006 EMC2 ER membrane protein complex subunit 2 yes yes 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 81.216 81.196 3 1.4541E-17 26789 20211116_3428_TMUAki_TMT10x_P_F1 142.97 121.38 6520500 11395000 137200 9686500 7446800 10002000 8038300 6257400 6138000 7119300 8512100 6072000 10627000 654260 10007000 7161800 10086000 8063900 6576900 6411700 6917500 8137800 3 3 2 3 3 3 3 3 3 3 3 4063200 6894400 71921 6070600 4151500 6756300 4680300 4063500 4019900 4546300 5180500 3783600 6430200 377960 6261400 3996500 6780100 4699300 4281800 4159600 4420300 4961500 2 2 1 2 2 2 2 2 2 2 2 2457300 4500700 65278 3615900 3295400 3246000 3358100 2193900 2118100 2573000 3331600 2288500 4196400 276300 3745800 3165300 3306000 3364600 2295100 2252100 2497300 3176300 1 1 1 1 1 1 1 1 1 1 1 1627000000 460140000 1166800000 14801 1749 13559 77504;77505;77506;77507 93644;93645;93646 93644 3 NSFQPISSLRDDERR Unmodified 1818.8973 0.89727285 1461 P98175;P98175-2;P98175-5;P98175-3;P98175-4 RBM10 RNA-binding protein 10 yes no 0 0 0 2 By matching By MS/MS 5 0 2 1 1 36.036 36.109 4 0.0019242 7877 20211116_3444_TMUAki_TMT10x_S_F5 66.982 51.82 792550 1327800 18396 1640200 673580 462150 606870 503810 438700 449670 979870 738080 1240100 81186 1633600 645290 544410 613860 508520 472870 441400 928490 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 792550 1327800 18396 1640200 673580 462150 606870 503810 438700 449670 979870 738080 1240100 81186 1633600 645290 544410 613860 508520 472870 441400 928490 1 1 1 1 1 1 1 1 1 1 1 365780000 280320000 85461000 14802 1461 13560 77508;77509 93647 93647 1 NSFREQLEEEEEAK Unmodified 1736.7853 0.78532236 934 P35579 MYH9 Myosin-9 yes yes 0 0 0 1 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 44.79 44.621 3 1.2905E-37 13875 20211116_3439_TMUAki_TMT10x_S_F1 250.19 218.85 12963000 19580000 76704 28066000 18500000 16143000 12161000 9235000 10874000 8676100 15793000 12070000 18302000 1171500 27854000 17581000 17026000 12627000 9721400 11293000 8496500 15082000 6 6 4 6 6 6 6 6 6 6 6 9736100 14292000 68735 20639000 17013000 14918000 10571000 7325400 8349500 6693000 12035000 9065600 13360000 952390 20522000 16154000 15380000 10991000 7812200 8722100 6562800 11495000 4 4 3 4 4 4 4 4 4 4 4 3227200 5287500 7969.7 7426700 1487000 1225200 1589500 1909600 2524400 1983100 3758000 3004600 4941800 219150 7332700 1426900 1646000 1635900 1909200 2571000 1933800 3587000 2 2 1 2 2 2 2 2 2 2 2 1237600000 908550000 329000000 14803 934 13561 77510;77511;77512;77513;77514 93648;93649;93650;93651;93652;93653 93652 6 NSFREQLEEEEEAKHNLEK Unmodified 2358.1088 0.10878177 934 P35579 MYH9 Myosin-9 yes yes 0 0 0 2 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 47.996 47.926 5 2.3076E-50 15201 20211116_3430_TMUAki_TMT10x_P_F3 221.86 163.37 12224000 22691000 97054 20445000 26994000 31422000 18776000 20315000 19688000 17956000 21820000 11383000 21165000 1096900 21180000 25683000 31084000 19503000 21144000 20065000 17634000 20983000 6 6 5 6 6 6 6 6 6 6 6 9486700 17307000 65780 15495000 23870000 28660000 16430000 15528000 15094000 14106000 17032000 8833500 16143000 835370 16132000 22705000 28089000 17014000 16408000 15483000 13835000 16370000 4 4 3 4 4 4 4 4 4 4 4 2737600 5383800 31273 4950500 3124000 2762200 2345100 4786500 4593900 3850300 4787500 2549200 5022000 261520 5048200 2977700 2994400 2489100 4736400 4581900 3799000 4612400 2 2 2 2 2 2 2 2 2 2 2 2267100000 1746100000 521030000 14804 934 13562 77515;77516;77517;77518;77519 93654;93655;93656;93657;93658;93659 93655 6 NSGELEATSAFLASGQR Unmodified 1736.8329 0.83294126 3016 Q9NYB0 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 56.249 56.4 3 1.5737E-07 16992 20211116_3431_TMUAki_TMT10x_P_F4 104.89 78.77 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14805 3016 13563 77520 93660 93660 1 NSGLVSITSR Unmodified 1032.5564 0.55637247 2300 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 yes yes 0 0 0 0 By MS/MS 7 0.816 1 1 1 3 36.392 36.629 2 0.0013394 10014 20211116_3435_TMUAki_TMT10x_P_F7 91.215 67.658 453920 698430 4731.1 756160 878020 831010 545780 491770 493880 415790 623110 422680 651930 47982 768450 833820 834340 569370 514850 509300 409210 597090 2 2 2 2 2 2 2 2 2 2 2 453920 698430 4731.1 756160 878020 831010 545780 491770 493880 415790 623110 422680 651930 47982 768450 833820 834340 569370 514850 509300 409210 597090 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27321000 27321000 0 14806 2300 13564 77521;77522;77523 93661;93662 93662 2 NSGMPPGAAAIAVLPVTLDTPMNRK Oxidation (M) 2536.3142 0.31416363 573 P09417;P09417-2 QDPR Dihydropteridine reductase yes no 0 0 1 1 By MS/MS 2 0 1 1 68.298 67.988 4 8.0556E-08 22906 20211116_3429_TMUAki_TMT10x_P_F2 89.039 75.718 1638100 2856300 62112 2645300 1746500 3350900 2116600 2171000 1984900 2102700 2160000 1525700 2664400 195210 2724100 1687700 3343700 2123600 2264900 2031200 2056500 2078200 1 1 1 1 1 1 1 1 1 1 1 1638100 2856300 62112 2645300 1746500 3350900 2116600 2171000 1984900 2102700 2160000 1525700 2664400 195210 2724100 1687700 3343700 2123600 2264900 2031200 2056500 2078200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 429030000 429030000 0 14807 573 13565 77524 93663 93663 544 1 NSILAQVLDQSAR Unmodified 1413.7576 0.75759147 127 O14737;O14737-2 PDCD5 Programmed cell death protein 5 yes no 0 0 0 0 By MS/MS By MS/MS 7.22 0.786 2 3 4 6 3 68.6 68.745 2;3 6.567E-65 21208 20211116_3447_TMUAki_TMT10x_S_F8 322.07 283.78 40132000 69813000 444880 61811000 50989000 65008000 50026000 47300000 41647000 46032000 56854000 37370000 65113000 3845600 63670000 48891000 65630000 50535000 48947000 43275000 45010000 54374000 13 13 9 13 13 13 13 13 13 13 13 18940000 32648000 223080 30157000 22020000 40421000 25875000 21941000 19637000 21826000 26523000 17636000 30455000 1796100 31094000 21223000 40130000 25851000 23237000 20495000 21321000 25373000 8 8 6 8 8 8 8 8 8 8 8 21193000 37165000 221800 31654000 28969000 24586000 24151000 25359000 22011000 24206000 30331000 19734000 34658000 2049500 32576000 27668000 25500000 24683000 25710000 22781000 23689000 29001000 5 5 3 5 5 5 5 5 5 5 5 8626200000 5100300000 3525900000 14808 127 13566 77525;77526;77527;77528;77529;77530;77531;77532;77533 93664;93665;93666;93667;93668;93669;93670;93671;93672;93673;93674;93675;93676;93677 93674 14 NSILASSGFGAPLPSSSQPLTFGSGR Unmodified 2534.2765 0.2765158 2066 Q7LBC6;Q7LBC6-2 KDM3B Lysine-specific demethylase 3B yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 76.448 76.471 3 5.6056E-27 25674 20211116_3442_TMUAki_TMT10x_S_F4 148.1 133.07 1836800 3341400 0 2282300 1620700 3828400 2240500 2394900 2403000 2738600 2465900 1710200 3113900 142560 2426200 1569200 3772600 2245200 2517600 2439800 2660500 2376800 1 1 0 1 1 1 1 1 1 1 1 1836800 3341400 0 2282300 1620700 3828400 2240500 2394900 2403000 2738600 2465900 1710200 3113900 142560 2426200 1569200 3772600 2245200 2517600 2439800 2660500 2376800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 540910000 540910000 0 14809 2066 13567 77534;77535 93678;93679 93679 2 NSINQVVQLR Unmodified 1169.6517 0.65166983 796 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 44.33 44.393 2 4.3307E-05 11894 20211116_3436_TMUAki_TMT10x_P_F8 133.83 85.797 2538500 4078500 47605 4634300 5409400 5583300 3211300 4837900 5060700 3666900 4500700 2363700 3807700 267100 4702700 5132600 5612600 3429500 4921400 5047600 3629600 4359000 3 3 2 3 3 3 3 3 3 3 3 1801200 2889000 42309 3186700 4730800 4941600 2590800 3515600 3686200 2687000 3243200 1677200 2696900 201860 3256200 4483100 4893900 2773700 3621600 3686500 2658400 3142300 2 2 1 2 2 2 2 2 2 2 2 737350 1189400 5296.1 1447600 678600 641690 620530 1322300 1374500 979960 1257500 686580 1110800 65244 1446500 649530 718720 655800 1299800 1361200 971190 1216700 1 1 1 1 1 1 1 1 1 1 1 149770000 70673000 79096000 14810 796 13568 77536;77537 93680;93681;93682 93681 3 NSLDASRPAGLSPTLTPGER Unmodified 2038.0443 0.044331016 1678 Q14135;Q14135-5;Q14135-6;Q14135-2;Q14135-4 VGLL4 Transcription cofactor vestigial-like protein 4 yes no 0 0 0 1 By MS/MS 6 0 1 1 42.13 42.295 3 3.092E-23 10675 20211116_3445_TMUAki_TMT10x_S_F6 160.57 141.49 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14811 1678 13569 77538 93683 93683 1 NSLESYAFNMK Oxidation (M) 1318.5864 0.58635197 615 P11142 HSPA8 Heat shock cognate 71 kDa protein yes yes 0 0 1 0 By MS/MS By MS/MS 5.65 1.23 4 4 4 4 1 8 9 52.495 52.73 2;3 4.2284E-14 15688 20211116_3433_TMUAki_TMT10x_P_F5 183.81 157.43 116180000 198550000 1367600 229920000 189570000 195310000 109190000 178880000 159080000 136180000 179780000 108180000 185390000 10573000 231830000 179800000 200740000 116510000 181420000 160390000 134760000 172790000 23 23 15 23 23 23 23 23 23 23 23 58233000 99088000 730940 113350000 138920000 157940000 69960000 90120000 78175000 66973000 87055000 54223000 92513000 6254400 115300000 131490000 156620000 74823000 94358000 79485000 66363000 83704000 12 12 8 12 12 12 12 12 12 12 12 57945000 99465000 636630 116570000 50646000 37376000 39234000 88760000 80908000 69208000 92728000 53956000 92876000 4318800 116530000 48304000 44116000 41684000 87067000 80906000 68398000 89086000 11 11 7 11 11 11 11 11 11 11 11 37112000000 20381000000 16731000000 14812 615 13570 77539;77540;77541;77542;77543;77544;77545;77546;77547;77548;77549;77550;77551;77552;77553;77554;77555 93684;93685;93686;93687;93688;93689;93690;93691;93692;93693;93694;93695;93696;93697;93698;93699;93700;93701;93702;93703;93704;93705;93706 93688 621 23 NSLESYAFNMK Unmodified 1302.5914 0.59143734 615 P11142 HSPA8 Heat shock cognate 71 kDa protein yes yes 0 0 0 0 By MS/MS By MS/MS 6.64 0.881 1 4 4 2 5 6 61.33 61.579 2;3 1.9781E-104 20489 20211116_3446_TMUAki_TMT10x_S_F7 379.2 348.69 165190000 277590000 1421100 337360000 182260000 136370000 167860000 82824000 62364000 83698000 193280000 153810000 259240000 14208000 336940000 174410000 150120000 167760000 86938000 72706000 81708000 182400000 13 13 8 13 13 13 13 13 13 13 13 53282000 86884000 103730 103140000 83138000 75995000 73331000 26503000 19639000 27258000 60284000 49606000 81133000 4310800 103660000 79436000 77980000 73234000 29467000 23771000 26591000 56896000 5 5 2 5 5 5 5 5 5 5 5 111910000 190700000 1317300 234230000 99122000 60378000 94530000 56321000 42725000 56440000 133000000 104210000 178110000 9897500 233280000 94979000 72141000 94522000 57471000 48935000 55117000 125500000 8 8 6 8 8 8 8 8 8 8 8 21244000000 10237000000 11007000000 14813 615 13570 77556;77557;77558;77559;77560;77561;77562;77563;77564;77565;77566 93707;93708;93709;93710;93711;93712;93713;93714;93715;93716;93717;93718;93719 93717 13 NSLGGDVLFVGK Unmodified 1204.6452 0.64518747 2772 Q9H0D6;Q9H0D6-2 XRN2 5'-3' exoribonuclease 2 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 63.315 63.88 2 1.6291E-11 20954 20211116_3435_TMUAki_TMT10x_P_F7 162.68 126.35 12007000 20601000 315.25 19886000 15692000 21312000 14100000 15154000 14460000 13458000 16874000 11179000 19220000 1030900 20359000 15005000 21485000 14397000 15667000 14781000 13214000 16203000 3 3 1 3 3 3 3 3 3 3 3 7564300 13300000 0 12215000 11072000 16909000 9914000 9235900 8927200 8757200 10524000 7043000 12407000 659860 12608000 10586000 16764000 10086000 9763300 9181700 8572500 10102000 2 2 0 2 2 2 2 2 2 2 2 4442400 7300800 315.25 7670600 4619500 4402900 4185900 5918000 5532900 4701000 6351000 4136400 6813800 371080 7750300 4418500 4721000 4310300 5904100 5598900 4641300 6101200 1 1 1 1 1 1 1 1 1 1 1 1111100000 583400000 527750000 14814 2772 13571 77567;77568 93720;93721;93722 93721 3 NSLISSLEEEVSILNR Unmodified 1801.9422 0.94215736 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.745 1 2 3 3 3 80.551 80.528 2;3 1.554E-14 27314 20211116_3442_TMUAki_TMT10x_S_F4 128.95 102.83 11599000 19575000 110480 16025000 13191000 19889000 14952000 10688000 10181000 11344000 14303000 10801000 18253000 1070200 16656000 12698000 19816000 14926000 11351000 10713000 11052000 13670000 4 4 3 4 4 4 4 4 4 4 4 9001400 14859000 87402 12436000 9565900 16973000 11468000 8166100 7695400 8710900 11126000 8381700 13856000 818870 12926000 9224300 16813000 11416000 8763600 8115500 8485100 10626000 3 3 2 3 3 3 3 3 3 3 3 2598000 4716300 23082 3588700 3625100 2915300 3484000 2521900 2486000 2632600 3177800 2419100 4396600 251290 3730600 3473800 3002700 3510500 2587200 2597300 2566600 3044100 1 1 1 1 1 1 1 1 1 1 1 2829500000 1905600000 923890000 14815 1741 13572 77569;77570;77571;77572;77573;77574 93723;93724;93725;93726;93727 93727 5 NSLKIDNLDVNR Unmodified 1399.7419 0.7419414 336 O75475 PSIP1 PC4 and SFRS1-interacting protein yes yes 0 0 0 1 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 42.567 42.666 3 0.031903 10782 20211116_3445_TMUAki_TMT10x_S_F6 50.024 29.917 3049000 4713100 65372 5669900 4741100 4391500 3347000 3886700 4116200 3111400 4493200 2839400 4401400 337410 5697500 4514900 4541300 3491700 3954000 4167200 3070700 4322800 2 2 2 2 2 2 2 2 2 2 2 1489200 2061000 38109 2879700 3605900 3170000 1867600 1816000 1893900 1379800 2111300 1386900 1926200 188630 2884300 3416100 3181100 1986100 1901600 1933300 1365600 2030000 1 1 1 1 1 1 1 1 1 1 1 1559800 2652200 27262 2790200 1135200 1221500 1479400 2070800 2222300 1731600 2381900 1452500 2475300 148780 2813200 1098800 1360200 1505600 2052400 2233900 1705200 2292800 1 1 1 1 1 1 1 1 1 1 1 225910000 179100000 46805000 14816 336 13573 77575;77576;77577 93728 93728 1 NSLPDTVQIR Unmodified 1141.6091 0.60913632 1258 P56537 EIF6 Eukaryotic translation initiation factor 6 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 41.757 41.873 2 1.5967E-09 10316 20211116_3444_TMUAki_TMT10x_S_F5 185.6 133.81 6400500 10109000 58726 12906000 14287000 10686000 7593000 9389600 10597000 7260400 10917000 5959900 9442900 683140 12935000 13534000 10994000 8144900 9548400 10661000 7178600 10521000 6 6 4 6 6 6 6 6 6 6 6 2993200 4774300 19058 5948400 11125000 8041300 4721900 4457900 5203600 3402000 5334300 2787000 4459300 371160 6016700 10507000 7982300 5139300 4681700 5277400 3366000 5141800 3 3 2 3 3 3 3 3 3 3 3 3407300 5334300 39668 6957500 3161900 2644500 2871100 4931800 5393500 3858500 5582200 3172800 4983500 311980 6918600 3026600 3011500 3005600 4866700 5383300 3812600 5379100 3 3 2 3 3 3 3 3 3 3 3 507470000 293840000 213620000 14817 1258 13574 77578;77579;77580;77581 93729;93730;93731;93732;93733;93734 93733 6 NSLQEQQEEEEEARK Unmodified 1845.8341 0.83406347 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 1 By MS/MS 1 0 1 1 31.704 31.734 3 2.0878E-14 8645 20211116_3439_TMUAki_TMT10x_S_F1 152.94 138.25 82072 147390 2806 187000 80557 75907 98708 80767 118330 70626 135750 76438 137680 9398.2 186310 77868 84291 99782 81570 120140 69395 130410 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 82072 147390 2806 187000 80557 75907 98708 80767 118330 70626 135750 76438 137680 9398.2 186310 77868 84291 99782 81570 120140 69395 130410 1 1 1 1 1 1 1 1 1 1 1 25049000 0 25049000 14818 935 13575 77582 93735 93735 1 NSLTLEAVKR Unmodified 1129.6455 0.64552182 2466 Q96G03 PGM2 Phosphoglucomutase-2 yes yes 0 0 0 1 By MS/MS 8 0 1 1 38.854 39.197 3 0.00044906 9103 20211116_3447_TMUAki_TMT10x_S_F8 99.5 51.606 2716600 4484400 3030.3 4439300 2839600 2544100 2931400 2959300 2773400 2661800 3709400 2529300 4184200 216200 4503600 2724300 2718000 2963800 2978900 2861600 2611900 3549400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2716600 4484400 3030.3 4439300 2839600 2544100 2931400 2959300 2773400 2661800 3709400 2529300 4184200 216200 4503600 2724300 2718000 2963800 2978900 2861600 2611900 3549400 2 2 1 2 2 2 2 2 2 2 2 86464000 0 86464000 14819 2466 13576 77583 93736;93737 93737 2 NSNILEDLETLR Unmodified 1415.7256 0.72562264 1072 P48444 ARCN1 Coatomer subunit delta yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 76.236 76.159 2 1.0824E-19 26197 20211116_3429_TMUAki_TMT10x_P_F2 232.56 167.9 25510000 44458000 34250 38041000 29079000 45104000 33387000 30612000 28581000 31273000 36849000 23751000 41460000 1955700 39367000 27977000 45188000 33492000 31876000 29580000 30516000 35291000 6 6 2 6 6 6 6 6 6 6 6 14517000 24533000 0 21130000 13979000 30201000 17917000 17410000 15665000 17419000 21065000 13515000 22879000 984260 21932000 13489000 29920000 17898000 18347000 16227000 17012000 20153000 3 3 0 3 3 3 3 3 3 3 3 10994000 19924000 34250 16911000 15100000 14903000 15471000 13202000 12915000 13855000 15784000 10236000 18580000 971440 17435000 14488000 15268000 15594000 13529000 13353000 13504000 15137000 3 3 2 3 3 3 3 3 3 3 3 3855800000 2189300000 1666500000 14820 1072 13577 77584;77585;77586;77587;77588;77589 93738;93739;93740;93741;93742;93743 93739 6 NSNLDRHNLQDFINIK Unmodified 1939.9864 0.98642221 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0.707 1 2 1 1 3 52.444 52.75 4 1.0533E-28 16403 20211116_3435_TMUAki_TMT10x_P_F7 180.74 155.02 24646000 44757000 318500 46743000 33892000 42153000 26131000 38953000 35640000 29970000 39288000 22949000 41771000 2166500 47477000 32319000 43153000 27206000 39497000 35971000 29640000 37787000 7 7 4 7 7 7 7 7 7 7 7 10597000 17999000 121620 18858000 18205000 28444000 14665000 16132000 15363000 12523000 15820000 9867300 16798000 1060400 19321000 17372000 28109000 15082000 16915000 15615000 12379000 15247000 3 3 2 3 3 3 3 3 3 3 3 14049000 26759000 196890 27884000 15687000 13709000 11466000 22821000 20277000 17447000 23468000 13082000 24973000 1106200 28155000 14947000 15045000 12124000 22582000 20356000 17261000 22540000 4 4 2 4 4 4 4 4 4 4 4 3661100000 1555300000 2105800000 14821 1057 13578 77590;77591;77592;77593 93744;93745;93746;93747;93748;93749;93750 93745 7 NSNPDEIEIDFETLKPSTLR Unmodified 2317.1438 0.14377029 299 O60885;O60885-2;O60885-3 BRD4 Bromodomain-containing protein 4 yes no 0 0 0 1 By MS/MS 5 0 1 1 72.66 72.713 3 0.007103 23951 20211116_3433_TMUAki_TMT10x_P_F5 52.061 40.447 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14822 299 13579 77594 93751 93751 1 NSPLTVPMFLSLFSR Unmodified 1707.9018 0.90181287 2629 Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 0 0 0 0 By MS/MS 7 0 1 1 81.913 81.943 2 4.7692E-06 29039 20211116_3446_TMUAki_TMT10x_S_F7 92.856 64.844 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14823 2629 13580 77595 93752 93752 1 NSQSFFSGLFGGSSK Unmodified 1548.7209 0.72087161 1230 P54920 NAPA Alpha-soluble NSF attachment protein yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 75.642 75.511 3 0.00057182 27480 20211116_3441_TMUAki_TMT10x_S_F3 73.168 58.478 9811200 17367000 98426 16673000 11473000 13124000 12736000 11491000 9553100 11156000 12103000 9135900 16203000 920530 17005000 11038000 13552000 12754000 11756000 9948400 10909000 11597000 3 3 2 3 3 3 3 3 3 3 3 2973900 5236500 70845 5059300 3045500 5569800 3595700 3184400 3226200 3450700 3837700 2769500 4885500 313580 5181500 2938300 5589000 3607100 3366000 3320000 3359200 3683200 1 1 1 1 1 1 1 1 1 1 1 6837300 12131000 27581 11614000 8427800 7554500 9140400 8307100 6326900 7704900 8265500 6366400 11318000 606950 11824000 8100000 7963300 9147100 8390100 6628400 7549800 7913400 2 2 1 2 2 2 2 2 2 2 2 1358800000 446070000 912730000 14824 1230 13581 77596;77597;77598 93753;93754;93755 93754 3 NSRPEANEALER Unmodified 1384.6695 0.66950474 3342 Q9Y696 CLIC4 Chloride intracellular channel protein 4 yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 25.532 25.272 3 3.4526E-15 5212 20211116_3429_TMUAki_TMT10x_P_F2 182.72 152.79 247640 417490 1914.8 328810 345260 373980 304400 223800 243380 240840 334290 230580 389230 22096 342380 330040 374830 309010 235630 253490 234510 319660 2 2 1 2 2 2 2 2 2 2 2 148230 254500 0 180290 252720 284740 181160 134550 148350 143720 205630 138010 237200 12166 190720 240410 280260 186480 144650 154390 139990 196590 1 1 0 1 1 1 1 1 1 1 1 99411 162980 1914.8 148530 92542 89240 123240 89252 95027 97113 128660 92575 152030 9930.2 151660 89622 94569 122530 90980 99102 94522 123070 1 1 1 1 1 1 1 1 1 1 1 33784000 17373000 16411000 14825 3342 13582 77599;77600 93756;93757 93756 2 NSSHAGAFVIVTEEAIAK Unmodified 1842.9476 0.94757708 1104 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 59.088 59.342 3 3.2363E-08 17396 20211116_3447_TMUAki_TMT10x_S_F8 107.72 94.743 5167100 9430500 0 9366000 5785400 5161600 5617200 8247400 8340700 7809700 8923200 4810700 8799400 387900 9496500 5539900 5587000 5790900 8216500 8386700 7645400 8589900 3 3 0 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5167100 9430500 0 9366000 5785400 5161600 5617200 8247400 8340700 7809700 8923200 4810700 8799400 387900 9496500 5539900 5587000 5790900 8216500 8386700 7645400 8589900 3 3 0 3 3 3 3 3 3 3 3 960660000 0 960660000 14826 1104 13583 77601;77602;77603 93758;93759;93760;93761 93761 4 NSSISGPFGSR Unmodified 1107.5309 0.530886 1653 Q13610 PWP1 Periodic tryptophan protein 1 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 36.219 36.456 2 3.3515E-14 8549 20211116_3436_TMUAki_TMT10x_P_F8 181.4 147.66 329070 513030 2326.9 625940 1124400 862630 455500 394860 446470 316290 514650 306410 479130 40310 634120 1061400 853680 496730 422720 457020 312140 494350 2 2 1 2 2 2 2 2 2 2 2 329070 513030 2326.9 625940 1124400 862630 455500 394860 446470 316290 514650 306410 479130 40310 634120 1061400 853680 496730 422720 457020 312140 494350 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34027000 34027000 0 14827 1653 13584 77604;77605;77606;77607 93762;93763;93764 93763 3 NSSQFFQSYVER Unmodified 1490.679 0.6790068 1672 Q14008;Q14008-2;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 By MS/MS 7 0 1 1 52.604 53.296 2 1.33E-14 16633 20211116_3435_TMUAki_TMT10x_P_F7 149.23 136.19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14828 1672 13585 77608 93765 93765 1 NSSYFVEWIPNNVK Unmodified 1695.8257 0.82567103 1418;1668;2689;539;1640;488;2673 Q13509;Q13509-2;P07437;P68371;Q13885;Q9BVA1;P04350;Q9BUF5 TUBB3;TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB4A;TUBB6 Tubulin beta-3 chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-6 chain no no 0 0 0 0 By MS/MS By MS/MS 3.88 2.68 16 18 11 2 3 4 5 15 45 29 62.397 62.339 2;3;4 7.1503E-51 24157 20211116_3436_TMUAki_TMT10x_P_F8 284.47 262.9 504210000 869760000 4107100 803640000 564290000 642860000 686140000 276900000 230950000 322730000 603000000 469460000 811340000 40549000 820730000 543360000 656490000 675370000 301380000 268070000 313310000 570180000 102 102 52 101 101 101 101 102 102 102 102 307150000 534070000 2952800 485020000 329600000 468030000 431610000 160430000 132280000 189230000 365220000 285980000 498160000 24021000 496630000 317850000 470820000 423040000 179500000 155940000 183630000 345100000 57 57 27 56 56 56 56 57 57 57 57 197060000 335690000 1154300 318620000 234690000 174830000 254530000 116470000 98668000 133500000 237780000 183480000 313170000 16528000 324100000 225510000 185660000 252320000 121880000 112130000 129680000 225070000 45 45 25 45 45 45 45 45 45 45 45 211770000000 116960000000 94804000000 14829 1640;539;1418;1668;2689;488;2673 13586 77609;77610;77611;77612;77613;77614;77615;77616;77617;77618;77619;77620;77621;77622;77623;77624;77625;77626;77627;77628;77629;77630;77631;77632;77633;77634;77635;77636;77637;77638;77639;77640;77641;77642;77643;77644;77645;77646;77647;77648;77649;77650;77651;77652;77653;77654;77655;77656;77657;77658;77659;77660;77661;77662;77663;77664;77665;77666;77667;77668;77669;77670;77671;77672;77673;77674;77675;77676;77677;77678;77679;77680;77681;77682 93766;93767;93768;93769;93770;93771;93772;93773;93774;93775;93776;93777;93778;93779;93780;93781;93782;93783;93784;93785;93786;93787;93788;93789;93790;93791;93792;93793;93794;93795;93796;93797;93798;93799;93800;93801;93802;93803;93804;93805;93806;93807;93808;93809;93810;93811;93812;93813;93814;93815;93816;93817;93818;93819;93820;93821;93822;93823;93824;93825;93826;93827;93828;93829;93830;93831;93832;93833;93834;93835;93836;93837;93838;93839;93840;93841;93842;93843;93844;93845;93846;93847;93848;93849;93850;93851;93852;93853;93854;93855;93856;93857;93858;93859;93860;93861;93862;93863;93864;93865;93866;93867;93868;93869;93870 93816 105 NSTECTLILTEGDSAK Unmodified 1737.8091 0.80909427 625 P11388;P11388-2;P11388-3;P11388-4 TOP2A DNA topoisomerase 2-alpha yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 52.522 52.454 3 1.284E-08 18131 20211116_3441_TMUAki_TMT10x_S_F3 120.63 109.19 16609000 26134000 84335 30842000 23811000 28366000 17933000 19441000 20884000 18585000 21638000 15463000 24404000 1376500 31094000 22676000 28849000 18589000 20191000 21143000 18187000 20851000 6 6 2 6 6 6 6 6 6 6 6 11090000 16776000 84335 20386000 19431000 24326000 13699000 13005000 13670000 12367000 14354000 10326000 15667000 1020300 20601000 18486000 24284000 14194000 13774000 13932000 12105000 13826000 4 4 2 4 4 4 4 4 4 4 4 5518400 9358900 0 10455000 4379400 4039800 4234400 6436300 7213900 6218100 7284200 5137500 8736900 356150 10493000 4190000 4565100 4394900 6416500 7211000 6081900 7024600 2 2 0 2 2 2 2 2 2 2 2 2166100000 955280000 1210800000 14830 625 13587 77683;77684;77685;77686 93871;93872;93873;93874;93875;93876 93875 6 NSTFAEEFAHSIR Unmodified 1507.7056 0.7055559 1877 Q2M389;Q2M389-2 KIAA1033 WASH complex subunit 7 yes no 0 0 0 0 By MS/MS 4 0 1 1 50.296 50.459 3 0.005458 14570 20211116_3431_TMUAki_TMT10x_P_F4 64.476 32.649 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14831 1877 13588 77687 93877 93877 1 NSTFSEIFKK Unmodified 1199.6186 0.61863837 853 P29401;P29401-2 TKT Transketolase yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 54.723 54.572 3 4.7977E-05 17986 20211116_3439_TMUAki_TMT10x_S_F1 126.1 102.75 15165000 23940000 207380 28714000 31970000 28630000 16778000 22118000 21109000 18994000 23916000 14121000 22356000 1685900 28955000 30285000 29025000 17947000 22723000 21385000 18680000 22984000 3 3 3 3 3 3 3 3 3 3 3 10411000 15955000 152950 19167000 28496000 25327000 13744000 15154000 14522000 13204000 15986000 9694700 14900000 1259000 19419000 26962000 25193000 14737000 15863000 14792000 12976000 15376000 2 2 2 2 2 2 2 2 2 2 2 4753800 7984600 54429 9546900 3473500 3303000 3033800 6964100 6586700 5790500 7929800 4426700 7456300 426920 9535700 3322700 3832300 3210300 6860700 6593000 5703600 7608000 1 1 1 1 1 1 1 1 1 1 1 919490000 577650000 341840000 14832 853 13589 77688;77689 93878;93879;93880 93880 3 NSTFTEHLYR Unmodified 1266.5993 0.59929991 2663 Q9BTE3;Q9BTE3-2;Q9BTE3-3 MCMBP Mini-chromosome maintenance complex-binding protein yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 34.94 34.891 3 5.1744E-06 8650 20211116_3433_TMUAki_TMT10x_P_F5 139.32 119.02 584890 976670 20796 1087300 1732600 1604000 832880 843880 825490 673590 976100 544750 911750 83947 1109200 1639900 1585100 891640 891270 845460 664880 936940 1 1 1 1 1 1 1 1 1 1 1 584890 976670 20796 1087300 1732600 1604000 832880 843880 825490 673590 976100 544750 911750 83947 1109200 1639900 1585100 891640 891270 845460 664880 936940 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 46682000 46682000 0 14833 2663 13590 77690;77691 93881;93882 93881 2 NSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIR Unmodified 4110.7534 0.75337271 1165 P51858;P51858-3;P51858-2 HDGF Hepatoma-derived growth factor yes no 0 0 0 2 By MS/MS 1 0 1 1 42.696 42.696 5 1.4161E-61 11125 20211116_3428_TMUAki_TMT10x_P_F1 207.53 202.86 252230 527880 4050.2 622670 646250 932810 474920 458740 462630 397420 428960 234880 492920 30205 633160 615600 920500 490310 488500 469990 390660 414840 1 1 1 1 1 1 1 1 1 1 1 252230 527880 4050.2 622670 646250 932810 474920 458740 462630 397420 428960 234880 492920 30205 633160 615600 920500 490310 488500 469990 390660 414840 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 186270000 186270000 0 14834 1165 13591 77692 93883 93883 1 NSTTDQVYQAIAAK Unmodified 1508.7471 0.74708636 2515 Q96L92;Q96L92-3;Q96L92-2 SNX27 Sorting nexin-27 yes no 0 0 0 0 By MS/MS 6 0 1 1 57.142 57.197 3 0.086997 16776 20211116_3445_TMUAki_TMT10x_S_F6 34.954 15.631 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14835 2515 13592 77693 93884 93884 1 NSVEVALNK Unmodified 972.52401 0.52400971 1219 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 0.745 1 2 3 3 3 43.049 43.166 2;3 5.6827E-06 10797 20211116_3444_TMUAki_TMT10x_S_F5 182.39 125.88 8525500 12917000 81040 13894000 10474000 12848000 10395000 8204500 11077000 9186200 11494000 7938600 12056000 794220 14089000 10044000 13049000 10569000 8605600 11254000 8931300 11075000 4 4 3 4 4 4 4 4 4 4 4 4534100 6837900 80981 7341900 7270400 9049100 6002000 4690000 6354700 5125700 6127400 4222300 6382400 489710 7479900 6944200 9015400 6165300 5001500 6441400 4988000 5917900 2 2 2 2 2 2 2 2 2 2 2 3991400 6079000 58.649 6551800 3203200 3799100 4392600 3514500 4721900 4060500 5366400 3716200 5674100 304520 6609300 3100300 4033700 4403600 3604000 4812200 3943200 5156900 2 2 1 2 2 2 2 2 2 2 2 547590000 327520000 220070000 14836 1219 13593 77694;77695;77696;77697;77698;77699 93885;93886;93887;93888;93889 93888 5 NSVPVTVAMVER Oxidation (M) 1316.6758 0.67583567 3287 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog yes yes 0 0 1 0 By MS/MS 4 0 1 1 39.517 39.715 2 0.10861 10660 20211116_3442_TMUAki_TMT10x_S_F4 54.784 30.991 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14837 3287 13594 77700 93890 93890 3255 1 NSVTGGTAAFEPSVDYCVVK Unmodified 2099.9834 0.98337024 831 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 0 0 0 0 By MS/MS 6 0 1 1 62.938 62.917 3 0.0019403 19139 20211116_3445_TMUAki_TMT10x_S_F6 62.362 51.418 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14838 831 13595 77701 93891 93891 1 NSVTPDMMEEMYK 3 Oxidation (M) 1621.631 0.63099525 1051 P46777 RPL5 60S ribosomal protein L5 yes yes 0 0 3 0 By MS/MS 3 0 1 1 36.299 36.306 3 0.059328 10483 20211116_3430_TMUAki_TMT10x_P_F3 40.025 26.119 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14839 1051 13596 77702 93892 93892 1356;1357;1358 1 NSVTPDMMEEMYKK Unmodified 1701.7412 0.7412144 1051 P46777 RPL5 60S ribosomal protein L5 yes yes 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 56.847 56.972 3 1.1462E-09 16684 20211116_3445_TMUAki_TMT10x_S_F6 110.38 92.088 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14840 1051 13597 77703;77704 93893;93894 93894 2 NSVVEASEAAYK Unmodified 1266.6092 0.6091959 1515 Q04917 YWHAH 14-3-3 protein eta yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 43.418 43.548 3 3.9927E-06 13258 20211116_3430_TMUAki_TMT10x_P_F3 109.44 85.099 684680 922060 6017.5 1020700 1633600 1399100 951370 791650 904600 704040 855390 637550 860750 75663 1040000 1549600 1388300 999240 832920 920580 691210 826690 1 1 1 1 1 1 1 1 1 1 1 684680 922060 6017.5 1020700 1633600 1399100 951370 791650 904600 704040 855390 637550 860750 75663 1040000 1549600 1388300 999240 832920 920580 691210 826690 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 107600000 43882000 63722000 14841 1515 13598 77705;77706;77707 93895;93896 93895 2 NSVVEASEAAYKEAFEISK Unmodified 2071.011 0.010965202 1515 Q04917 YWHAH 14-3-3 protein eta yes yes 0 0 0 1 By MS/MS 5 0 1 1 74.617 74.653 3 7.0536E-41 24747 20211116_3433_TMUAki_TMT10x_P_F5 189.47 165.46 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14842 1515 13599 77708 93897 93897 1 NSYVAGQYDDAASYQR Unmodified 1806.7809 0.78090569 626 P11413;P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 39.94 39.879 3 0.0018864 10550 20211116_3442_TMUAki_TMT10x_S_F4 61.648 58.26 1404200 2345500 13028 2742500 1450100 1282800 1281300 2149400 2389300 1854700 2326600 1307500 2190100 122090 2747900 1386500 1416400 1342800 2132900 2380000 1823500 2246300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1404200 2345500 13028 2742500 1450100 1282800 1281300 2149400 2389300 1854700 2326600 1307500 2190100 122090 2747900 1386500 1416400 1342800 2132900 2380000 1823500 2246300 2 2 1 2 2 2 2 2 2 2 2 63907000 0 63907000 14843 626 13600 77709;77710 93898;93899 93899 2 NTAEWLLSHTK Unmodified 1298.6619 0.66190017 469 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 0 0 By MS/MS 7 0 1 1 53.955 54.676 3 5.5931E-05 17184 20211116_3435_TMUAki_TMT10x_P_F7 90.861 67.184 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14844 469 13601 77711 93900 93900 1 NTAMDAQEALAR Oxidation (M) 1305.5983 0.59831364 2059 Q7L4I2;Q7L4I2-2 RSRC2 Arginine/serine-rich coiled-coil protein 2 yes no 0 0 1 0 By MS/MS 3 0 1 1 34.039 33.8 2 0.062542 10557 20211116_3441_TMUAki_TMT10x_S_F3 54.27 39.332 208060 338170 2325 387020 184450 186380 198660 281260 321230 230290 335250 193750 315730 19086 388380 177360 204380 204560 279650 321930 227010 322970 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 208060 338170 2325 387020 184450 186380 198660 281260 321230 230290 335250 193750 315730 19086 388380 177360 204380 204560 279650 321930 227010 322970 1 1 1 1 1 1 1 1 1 1 1 12502000 0 12502000 14845 2059 13602 77712 93901 93901 2572 1 NTAPDNGPILLQAQTTQR Unmodified 1936.9967 0.99665254 1563 Q12788 TBL3 Transducin beta-like protein 3 yes yes 0 0 0 0 By MS/MS 5 0 1 1 46.72 46.883 3 0.018419 12265 20211116_3444_TMUAki_TMT10x_S_F5 46.356 27.281 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14846 1563 13603 77713 93902 93902 1 NTCEAVVLGTLHPR Unmodified 1565.7984 0.79841043 2908 Q9NQT4 EXOSC5 Exosome complex component RRP46 yes yes 0 0 0 0 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 45.135 45.344 3 1.0596E-09 11958 20211116_3445_TMUAki_TMT10x_S_F6 134.81 119.93 21874000 33916000 237390 32654000 28092000 27439000 23814000 27834000 25599000 22946000 32406000 20369000 31642000 1766200 33323000 26842000 28283000 24434000 28133000 26206000 22612000 31050000 8 8 6 8 8 8 8 8 8 8 8 9088600 12583000 14703 12647000 17226000 16750000 10804000 10866000 9512800 8899300 13885000 8462300 11741000 525530 12959000 16356000 16678000 11255000 11286000 9889300 8772600 13259000 3 3 1 3 3 3 3 3 3 3 3 12786000 21333000 222680 20006000 10866000 10689000 13009000 16968000 16086000 14047000 18521000 11906000 19901000 1240700 20364000 10486000 11605000 13179000 16847000 16317000 13839000 17791000 5 5 5 5 5 5 5 5 5 5 5 2600400000 1267400000 1333000000 14847 2908 13604 77714;77715;77716;77717;77718 93903;93904;93905;93906;93907;93908;93909;93910 93909 8 NTCEHIYEFPQLSEDVIR Unmodified 2249.0423 0.042282105 22 A6NIH7 UNC119B Protein unc-119 homolog B yes yes 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 61.614 61.415 3 5.2463E-24 21822 20211116_3441_TMUAki_TMT10x_S_F3 173.87 160.24 10121000 18534000 69793 16576000 13424000 19946000 13800000 19149000 16076000 17251000 16019000 9423800 17287000 811750 17099000 12882000 20094000 14048000 19452000 16253000 16927000 15455000 9 9 5 9 9 9 9 9 9 9 9 5885700 10517000 63253 9453200 7747600 14671000 8705900 11485000 9654000 9923700 9246200 5480400 9809300 546040 9796900 7454900 14552000 8810000 11791000 9765300 9756400 8932100 5 5 4 5 5 5 5 5 5 5 5 4235300 8017300 6539.7 7122500 5676400 5275100 5093800 7663300 6421800 7327800 6773000 3943400 7477700 265710 7301700 5427500 5541600 5238400 7660900 6487400 7170500 6522800 4 4 1 4 4 4 4 4 4 4 4 3358800000 2097800000 1261000000 14848 22 13605 77719;77720;77721;77722;77723 93911;93912;93913;93914;93915;93916;93917;93918;93919 93916 9 NTCQLYIQTDHLFFK Unmodified 1926.9298 0.92981853 123 O14672 ADAM10 Disintegrin and metalloproteinase domain-containing protein 10 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 68.027 67.924 3 0.00011989 23402 20211116_3439_TMUAki_TMT10x_S_F1 82.007 63.174 2876100 5033700 57126 4208200 3443600 2803900 3051100 2550600 2272500 2707700 3561700 2678400 4693900 299640 4330300 3295500 2937300 3091300 2610800 2391700 2638000 3396000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2876100 5033700 57126 4208200 3443600 2803900 3051100 2550600 2272500 2707700 3561700 2678400 4693900 299640 4330300 3295500 2937300 3091300 2610800 2391700 2638000 3396000 1 1 1 1 1 1 1 1 1 1 1 605660000 329360000 276300000 14849 123 13606 77724;77725;77726 93920;93921 93921 2 NTDEMVELR Oxidation (M) 1121.5023 0.50228798 1329;1330 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 1 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 32.414 32.382 2 0.00084863 8822 20211116_3439_TMUAki_TMT10x_S_F1 117.84 99.107 2068800 3261300 5208.6 3639100 4428000 3030700 2463300 1517300 1978500 1696700 2896400 1926100 3044600 184670 3676700 4195100 3091000 2586300 1624400 2066600 1649700 2765700 4 4 2 4 4 4 4 4 4 4 4 1269100 1961300 2142.9 2268200 3604200 2356600 1533500 901460 1188500 1038300 1788800 1181500 1831200 125040 2293600 3403000 2362600 1653000 994080 1245500 1008500 1707000 2 2 1 2 2 2 2 2 2 2 2 799760 1300100 3065.7 1370800 823780 674110 929810 615790 790090 658380 1107600 744600 1213400 59630 1383100 792090 728400 933280 630310 821160 641260 1058600 2 2 1 2 2 2 2 2 2 2 2 471760000 298600000 173170000 14850 1329;1330 13607 77727;77728;77729;77730 93922;93923;93924;93925 93924 1786 4 NTDEMVELR Unmodified 1105.5074 0.50737336 1329;1330 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 0 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 3 4 39.693 39.637 2 4.1481E-22 11957 20211116_3439_TMUAki_TMT10x_S_F1 266.99 218.43 8298400 11589000 44310 17621000 20224000 8818800 9350000 4679500 4706100 4530900 10963000 7726400 10836000 828180 17419000 19117000 9433900 9908900 4962300 5212900 4431200 10382000 8 8 4 8 8 8 8 8 8 8 8 4922100 6560700 28060 10257000 17359000 7055200 6262600 2641100 2660300 2633600 6364000 4582700 6135600 552080 10155000 16363000 7285700 6821100 2907900 2995400 2572400 6024500 4 4 2 4 4 4 4 4 4 4 4 3376300 5027900 16250 7364500 2865600 1763600 3087400 2038400 2045800 1897300 4599100 3143700 4700300 276090 7264200 2753500 2148300 3087900 2054400 2217500 1858900 4357500 4 4 2 4 4 4 4 4 4 4 4 643530000 412220000 231310000 14851 1329;1330 13607 77731;77732;77733;77734;77735;77736;77737 93926;93927;93928;93929;93930;93931;93932;93933 93930 8 NTDVVATLKK Unmodified 1087.6237 0.62372375 2083 Q7Z4V5;Q7Z4V5-2;Q7Z4V5-4;Q7Z4V5-3 HDGFRP2 Hepatoma-derived growth factor-related protein 2 yes no 0 0 0 1 By MS/MS 8 0 1 1 43.297 43.308 3 0.091005 10886 20211116_3447_TMUAki_TMT10x_S_F8 40.88 21.748 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14852 2083 13608 77738 93934 93934 1 NTEAVTLNFR Unmodified 1163.5935 0.59348625 3155 Q9UKF6 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 yes yes 0 0 0 0 By MS/MS 5 0 1 1 46.133 46.287 2 0.040675 13183 20211116_3433_TMUAki_TMT10x_P_F5 57.477 35.97 2059100 3541500 0 3657500 4260400 4849600 2665400 2771800 2759600 2488000 3153200 1917100 3305000 185590 3740900 4044000 4820300 2789900 2914500 2817300 2441600 3029600 1 1 0 1 1 1 1 1 1 1 1 2059100 3541500 0 3657500 4260400 4849600 2665400 2771800 2759600 2488000 3153200 1917100 3305000 185590 3740900 4044000 4820300 2789900 2914500 2817300 2441600 3029600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 223890000 223890000 0 14853 3155 13609 77739 93935 93935 1 NTEAVTLNFRGEK Unmodified 1477.7525 0.75250609 3155 Q9UKF6 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 yes yes 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 42.221 42.324 3 2.0178E-09 10595 20211116_3445_TMUAki_TMT10x_S_F6 134.14 109.21 4115800 6426100 44091 6962800 6099200 5528200 4238700 4907000 4889500 3840600 5291400 3832600 5998200 410100 7043800 5804100 5706300 4416900 4988500 4960000 3794800 5092000 3 3 3 3 3 3 3 3 3 3 3 1881700 2800800 23126 3094000 3544300 3664300 2164900 2136700 2174100 1667400 2317600 1752200 2614600 200840 3144200 3365200 3663400 2268400 2235500 2216500 1647800 2231300 1 1 1 1 1 1 1 1 1 1 1 2234100 3625200 20966 3868800 2554900 1864000 2073800 2770300 2715300 2173200 2973800 2080300 3383600 209260 3899600 2438900 2042900 2148600 2753000 2743500 2147100 2860700 2 2 2 2 2 2 2 2 2 2 2 427010000 264090000 162920000 14854 3155 13610 77740;77741;77742;77743 93936;93937;93938 93938 3 NTELAVFHDETEIQNQTDLLSLSGK Unmodified 2801.3719 0.37193232 1002 P41252 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 By MS/MS By MS/MS 3.2 0.98 3 3 3 1 4 6 76.304 76.222 3;4 4.9814E-38 26181 20211116_3429_TMUAki_TMT10x_P_F2 181.35 153.17 28174000 49465000 274670 40957000 34723000 46255000 38937000 35289000 33984000 35817000 39797000 26233000 46124000 2515100 42463000 33406000 46548000 39122000 36449000 34996000 34959000 38210000 14 14 8 14 14 14 14 14 14 14 14 10360000 17566000 19952 14167000 10751000 23353000 13564000 13179000 12658000 13171000 14328000 9645400 16378000 768280 14830000 10373000 22995000 13584000 13912000 12977000 12864000 13770000 5 5 1 5 5 5 5 5 5 5 5 17814000 31899000 254720 26789000 23972000 22902000 25373000 22111000 21326000 22646000 25468000 16588000 29746000 1746800 27632000 23033000 23553000 25538000 22537000 22019000 22095000 24440000 9 9 7 9 9 9 9 9 9 9 9 6574100000 3659800000 2914400000 14855 1002 13611 77744;77745;77746;77747;77748;77749;77750;77751;77752;77753 93939;93940;93941;93942;93943;93944;93945;93946;93947;93948;93949;93950;93951;93952;93953 93939 15 NTFDHPYPTTK Unmodified 1319.6146 0.61461563 1325 P61962 DCAF7 DDB1- and CUL4-associated factor 7 yes yes 0 0 0 0 By MS/MS By matching 5 0 2 1 1 35.461 35.529 3 0.024229 8984 20211116_3433_TMUAki_TMT10x_P_F5 51.726 41.411 1860200 3071700 0 2968500 3574600 3769000 2492600 1947500 2290800 1830600 2579000 1731700 2865900 135490 3047700 3397500 3749300 2578700 2068500 2349500 1792600 2478900 1 1 0 1 1 1 1 1 1 1 1 1860200 3071700 0 2968500 3574600 3769000 2492600 1947500 2290800 1830600 2579000 1731700 2865900 135490 3047700 3397500 3749300 2578700 2068500 2349500 1792600 2478900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 104840000 86053000 18783000 14856 1325 13612 77754;77755 93954 93954 1 NTGIICTIGPASR Unmodified 1358.6976 0.69763375 670;671 P14618;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 By MS/MS By MS/MS 5 2.83 5 1 1 3 4 4 10 8 44.725 44.868 2;3 3.8629E-30 12011 20211116_3428_TMUAki_TMT10x_P_F1 253.97 229.95 72373000 114980000 323560 135820000 141420000 139550000 86125000 96330000 95341000 83153000 111400000 67381000 107360000 6328600 137140000 134170000 140970000 90537000 99728000 97159000 81755000 106960000 26 26 9 26 26 26 26 26 26 26 26 45939000 71611000 231090 85620000 119960000 120510000 64820000 63178000 61990000 55598000 71118000 42770000 66873000 4374100 86879000 113610000 119320000 68545000 66901000 63512000 54612000 68323000 16 16 7 16 16 16 16 16 16 16 16 26433000 43365000 92464 50196000 21458000 19047000 21305000 33152000 33350000 27556000 40277000 24611000 40490000 1954600 50260000 20560000 21642000 21992000 32827000 33647000 27143000 38640000 10 10 2 10 10 10 10 10 10 10 10 26566000000 17967000000 8599300000 14857 670;671 13613 77756;77757;77758;77759;77760;77761;77762;77763;77764;77765;77766;77767;77768;77769;77770;77771;77772;77773 93955;93956;93957;93958;93959;93960;93961;93962;93963;93964;93965;93966;93967;93968;93969;93970;93971;93972;93973;93974;93975;93976;93977;93978;93979;93980;93981;93982 93956 28 NTGVILANDANAER Unmodified 1456.727 0.72701962 1042 P46087;P46087-2;P46087-4;P46087-3 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 0 0 0 0 By MS/MS 3.67 0.471 1 2 3 36.483 36.615 2;3 4.2252E-30 12467 20211116_3441_TMUAki_TMT10x_S_F3 217.68 178.06 178550 289990 246.81 280990 172160 128340 166820 166370 200300 156150 232090 166240 270560 13631 285010 164870 141010 170530 166920 203430 152920 222910 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 178550 289990 246.81 280990 172160 128340 166820 166370 200300 156150 232090 166240 270560 13631 285010 164870 141010 170530 166920 203430 152920 222910 2 2 1 2 2 2 2 2 2 2 2 12753000 0 12753000 14858 1042 13614 77774;77775;77776 93983;93984;93985 93983 3 NTKEPPLSLTIHLTSPVVR Unmodified 2101.1895 0.18953869 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 1 By MS/MS By MS/MS 3 0 2 1 1 56.083 55.778 4 4.3947E-06 19478 20211116_3441_TMUAki_TMT10x_S_F3 91.64 74.754 5172600 8255500 27520 8845900 6529600 9330500 6415700 6626800 6661100 6284800 6745000 4816300 7705400 458230 8989800 6258700 9414700 6521300 6863900 6768800 6152100 6504100 2 2 1 2 2 2 2 2 2 2 2 2892200 4595900 27520 4947600 4727900 7019800 4446400 3880400 3759200 3469700 3791900 2693200 4289800 291140 5053500 4527900 6953000 4503600 4091500 3855500 3405600 3656900 1 1 1 1 1 1 1 1 1 1 1 2280300 3659500 0 3898300 1801700 2310700 1969300 2746400 2902000 2815100 2953100 2123100 3415600 167090 3936300 1730800 2461700 2017600 2772400 2913200 2746500 2847200 1 1 0 1 1 1 1 1 1 1 1 535330000 312640000 222690000 14859 1576 13615 77777;77778 93986;93987 93987 2 NTKLDDLFLKR Unmodified 1361.7667 0.76669959 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 2 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 53.73 53.545 4 1.9186E-08 16995 20211116_3429_TMUAki_TMT10x_P_F2 154.09 121.36 11416000 19822000 41145 18570000 19061000 16882000 12230000 20061000 17766000 14602000 17065000 10629000 18491000 1041500 19007000 18105000 17374000 12934000 20073000 17807000 14486000 16483000 4 4 3 4 4 4 4 4 4 4 4 6252100 10723000 3434.7 10093000 13317000 12380000 8648900 11162000 9848400 7803600 9522200 5821000 10003000 570080 10375000 12648000 12443000 9054100 11310000 9955000 7759800 9195800 2 2 1 2 2 2 2 2 2 2 2 5163800 9099300 37710 8476900 5744600 4502400 3581400 8898600 7917400 6798100 7542600 4808300 8488300 471390 8632300 5456100 4930700 3880100 8762800 7851500 6725900 7287700 2 2 2 2 2 2 2 2 2 2 2 1547800000 856770000 691060000 14860 1018 13616 77779;77780;77781;77782 93988;93989;93990;93991 93989 4 NTKYPIQR Unmodified 1018.556 0.55597854 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 1 By MS/MS 1 0 1 1 30.043 30.109 3 0.041866 7991 20211116_3439_TMUAki_TMT10x_S_F1 58.37 27.712 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14861 1695 13617 77783 93992 93992 1 NTLCAPEVISLINTR Unmodified 1699.8927 0.89270474 2426 Q96CS3 FAF2 FAS-associated factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 7.75 0.433 1 3 2 2 72.655 72.483 2;3 7.8033E-38 22789 20211116_3447_TMUAki_TMT10x_S_F8 252.08 218.19 5944500 10378000 151710 9074800 8271200 6507600 7006400 6892500 6405900 6827100 8009700 5536000 9679000 666820 9311500 7908200 6796500 7154400 6986400 6600100 6670400 7677100 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5944500 10378000 151710 9074800 8271200 6507600 7006400 6892500 6405900 6827100 8009700 5536000 9679000 666820 9311500 7908200 6796500 7154400 6986400 6600100 6670400 7677100 3 3 3 3 3 3 3 3 3 3 3 843140000 0 843140000 14862 2426 13618 77784;77785;77786;77787 93993;93994;93995;93996;93997 93997 5 NTLFNLSNFLDK Unmodified 1424.73 0.72997974 1637 Q13492;Q13492-4;Q13492-3;Q13492-2;Q13492-5 PICALM Phosphatidylinositol-binding clathrin assembly protein no no 0 0 0 0 By MS/MS 2 0 1 1 79.5 79.483 3 2.4261E-08 27520 20211116_3429_TMUAki_TMT10x_P_F2 120.14 95.754 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14863 1637 13619 77788 93998 93998 1 NTLIQFEDFGNHNAFR Unmodified 1921.9071 0.90710925 780 P23368;P23368-2 ME2 NAD-dependent malic enzyme, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 62.265 62.493 3 1.0358E-35 20906 20211116_3446_TMUAki_TMT10x_S_F7 207.4 197.06 10503000 17045000 0 16580000 12053000 10470000 10543000 11072000 9971600 10979000 13108000 9778600 15903000 764060 16855000 11511000 11056000 10756000 11224000 10281000 10727000 12547000 3 3 0 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10503000 17045000 0 16580000 12053000 10470000 10543000 11072000 9971600 10979000 13108000 9778600 15903000 764060 16855000 11511000 11056000 10756000 11224000 10281000 10727000 12547000 3 3 0 3 3 3 3 3 3 3 3 1217600000 0 1217600000 14864 780 13620 77789;77790;77791 93999;94000;94001;94002 94002 4 NTLLIAGLQAR Unmodified 1168.6928 0.69280637 976 P39656;P39656-3;P39656-2 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 2 3 57.654 57.372 2 3.1222E-05 19072 20211116_3430_TMUAki_TMT10x_P_F3 103.87 89.878 24708000 42171000 327080 38780000 32184000 37566000 27800000 30588000 29949000 29521000 33181000 23008000 39337000 2418500 39783000 30767000 38187000 28494000 31420000 30488000 28876000 31908000 4 4 2 4 4 4 4 4 4 4 4 12040000 19415000 0 18337000 16538000 24253000 15614000 14903000 14314000 13853000 16554000 11210000 18112000 1021700 18871000 15831000 24133000 15846000 15593000 14699000 13572000 15900000 2 2 0 2 2 2 2 2 2 2 2 12668000 22756000 327080 20443000 15647000 13312000 12186000 15685000 15634000 15668000 16627000 11798000 21225000 1396800 20912000 14936000 14055000 12648000 15827000 15789000 15303000 16008000 2 2 2 2 2 2 2 2 2 2 2 2236500000 922990000 1313500000 14865 976 13621 77792;77793;77794;77795;77796 94003;94004;94005;94006 94004 4 NTLTNIAMRPGLEGYALPR Oxidation (M) 2102.0943 0.094258096 912 P33992 MCM5 DNA replication licensing factor MCM5 yes yes 0 0 1 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 55.904 55.713 3 3.6863E-08 17878 20211116_3429_TMUAki_TMT10x_P_F2 103.9 88.647 18610000 33168000 271540 29137000 22612000 34353000 21940000 29273000 27794000 26488000 27766000 17328000 30934000 1697800 30087000 21671000 34561000 22471000 29935000 28019000 25984000 26785000 7 7 3 7 7 7 7 7 7 7 7 10849000 19299000 38315 16385000 14078000 25732000 14341000 16836000 16126000 15700000 16328000 10100000 17997000 855170 17061000 13499000 25437000 14588000 17533000 16334000 15380000 15745000 4 4 1 4 4 4 4 4 4 4 4 7761100 13869000 233220 12752000 8534400 8621800 7599900 12436000 11669000 10788000 11437000 7227900 12937000 842620 13026000 8172000 9123800 7883700 12402000 11685000 10604000 11040000 3 3 2 3 3 3 3 3 3 3 3 4171800000 2760500000 1411300000 14866 912 13622 77797;77798;77799;77800 94007;94008;94009;94010;94011;94012;94013 94010 1134 7 NTLTNIAMRPGLEGYALPR Unmodified 2086.0993 0.099343474 912 P33992 MCM5 DNA replication licensing factor MCM5 yes yes 0 0 0 1 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 61.146 60.799 3 1.7048E-31 21500 20211116_3441_TMUAki_TMT10x_S_F3 188.19 160.93 11548000 19517000 94932 20606000 14206000 16320000 15031000 10746000 8766900 9955800 15111000 10753000 18215000 1083100 20881000 13648000 16764000 15009000 11183000 9418000 9755900 14381000 3 3 3 3 3 3 3 3 3 3 3 7581800 12437000 74375 13089000 9635200 12960000 10385000 6843600 5530500 6257600 9623300 7059900 11607000 726660 13305000 9262100 13074000 10345000 7249300 5984100 6135700 9156600 2 2 2 2 2 2 2 2 2 2 2 3966200 7080100 20557 7517200 4570700 3359200 4645300 3902100 3236300 3698200 5488000 3693100 6608100 356450 7575800 4385700 3690800 4664400 3933900 3434000 3620300 5224300 1 1 1 1 1 1 1 1 1 1 1 1332000000 705600000 626410000 14867 912 13622 77801;77802;77803 94014;94015;94016;94017 94017 4 NTNAGAPPGTAYQSPLPLSR Unmodified 2011.0123 0.012302606 1491 Q02218;Q02218-2;Q02218-3 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 49.609 49.603 3 1.9546E-13 13915 20211116_3436_TMUAki_TMT10x_P_F8 136.96 118.14 3673200 6253200 70469 6262600 5047500 7026300 4280000 5429800 5338500 4859500 5090200 3420300 5834900 344820 6399600 4821900 7074900 4414200 5584200 5375900 4769500 4918100 4 4 2 4 4 4 4 4 4 4 4 2516600 4205200 70469 4231400 4133900 6121600 3321000 3912700 3792500 3428600 3722400 2343700 3924000 289680 4343100 3947100 6070000 3425800 4075100 3835100 3368500 3593000 3 3 2 3 3 3 3 3 3 3 3 1156600 2048000 0 2031200 913660 904710 958930 1517200 1546000 1430900 1367800 1076600 1910900 55146 2056500 874770 1004900 988490 1509000 1540800 1401000 1325000 1 1 0 1 1 1 1 1 1 1 1 424800000 274880000 149920000 14868 1491 13623 77804;77805 94018;94019;94020;94021 94018 4 NTNDANSCQIIIPQNQVNR Unmodified 2198.0498 0.049827099 1133;884 P50395;P50395-2;P31150 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha no no 0 0 0 0 By MS/MS By MS/MS 4.8 0.98 1 3 3 3 6 4 42.378 42.487 2;3 2.8852E-192 11421 20211116_3431_TMUAki_TMT10x_P_F4 441.07 396.77 3801500 5952700 37417 8403200 9872700 9848600 5144200 7173100 7472600 5566100 6889400 3539700 5563600 346480 8421200 9348800 9883800 5537300 7380000 7479500 5502400 6664000 11 11 5 11 11 11 11 11 11 11 11 2724600 4251100 31763 5669100 9338600 9128800 4733500 5125900 5336200 4012300 4810400 2537100 3972000 271850 5735000 8840200 8996400 5060900 5380300 5383700 3964500 4656700 7 7 4 7 7 7 7 7 7 7 7 1076900 1701600 5653.7 2734100 534100 719810 410700 2047200 2136300 1553800 2079000 1002600 1591600 74630 2686200 508560 887370 476460 1999700 2095800 1537900 2007300 4 4 1 4 4 4 4 4 4 4 4 3895800000 2813900000 1081900000 14869 1133;884 13624 77806;77807;77808;77809;77810;77811;77812;77813;77814;77815 94022;94023;94024;94025;94026;94027;94028;94029;94030;94031;94032;94033 94025 12 NTNDANSCQIIIPQNQVNRK Unmodified 2326.1448 0.14479012 1133;884 P50395;P50395-2;P31150 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha no no 0 0 0 1 By MS/MS 7 0 2 2 37.591 38.029 3;4 4.6731E-51 10503 20211116_3435_TMUAki_TMT10x_P_F7 222.96 205.45 199920 318550 0 444010 952530 717890 383950 462980 489030 380850 406900 186090 297710 20398 448200 898600 708710 422440 481130 489990 375350 395060 2 2 0 2 2 2 2 2 2 2 2 199920 318550 0 444010 952530 717890 383950 462980 489030 380850 406900 186090 297710 20398 448200 898600 708710 422440 481130 489990 375350 395060 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 49634000 49634000 0 14870 1133;884 13625 77816;77817 94034;94035 94034 2 NTNEEDDEVREAMTR Oxidation (M) 1823.7592 0.75918397 1130 P49959;P49959-2;P49959-3 MRE11A Double-strand break repair protein MRE11A yes no 0 0 1 1 By MS/MS By MS/MS 1 0 4 2 2 28.534 28.578 3 9.5498E-07 5435 20211116_3428_TMUAki_TMT10x_P_F1 114.06 99.98 119740 176790 2025.2 251380 262820 137590 136990 65774 92448 76067 183410 111500 165240 11881 249470 248890 145580 144150 70382 99227 73867 174110 4 4 1 4 4 4 4 3 4 4 4 54043 69983 0 113180 218880 100700 75027 24748 37470 30027 81717 50311 65463 5744.5 112220 206190 101650 82462 29153 41333 29108 77459 1 1 0 1 1 1 1 1 1 1 1 65700 106800 2025.2 138200 43935 36893 61960 41026 54979 46041 101690 61188 99777 6136.8 137250 42703 43925 61690 41229 57894 44759 96653 3 3 1 3 3 3 3 2 3 3 3 41317000 31037000 10281000 14871 1130 13626 77818;77819;77820;77821 94036;94037 94036 1490 2 NTNEEDDEVREAMTR Unmodified 1807.7643 0.76426934 1130 P49959;P49959-2;P49959-3 MRE11A Double-strand break repair protein MRE11A yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 35.253 35.236 3 7.5958E-61 8064 20211116_3428_TMUAki_TMT10x_P_F1 297.49 273.09 1235300 1896000 6651.4 3320400 2318000 1108200 1276100 757900 774520 720720 1798100 1150100 1774500 110400 3253700 2196000 1257600 1333300 787140 846210 705430 1702900 3 3 1 3 3 3 3 3 3 3 3 373230 582220 0 1230900 1775100 744620 796040 230380 241440 222110 614220 347490 545700 47154 1202600 1677200 777010 841480 259940 283120 217270 580980 1 1 0 1 1 1 1 1 1 1 1 862040 1313800 6651.4 2089500 542920 363620 480050 527510 533080 498610 1183900 802620 1228800 63247 2051100 518750 480570 491870 527200 563090 488160 1121900 2 2 1 2 2 2 2 2 2 2 2 181310000 140820000 40494000 14872 1130 13626 77822;77823 94038;94039;94040 94038 3 NTNGSQFFITTVPTPHLDGK Unmodified 2173.0804 0.080382171 1549 Q08752 PPID Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 0 0 By MS/MS 8 0 1 1 64.247 64.418 3 1.2312E-07 19969 20211116_3436_TMUAki_TMT10x_P_F8 95.988 85.936 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14873 1549 13627 77824 94041 94041 1 NTNVEDVLNAR Unmodified 1243.6157 0.61567826 2520 Q96MW1 CCDC43 Coiled-coil domain-containing protein 43 yes yes 0 0 0 0 By MS/MS 3 0 1 1 44.605 44.639 2 5.0577E-08 13782 20211116_3430_TMUAki_TMT10x_P_F3 146.9 86.464 465450 784970 5121.3 832430 1458200 1200300 720270 758830 779610 581590 766660 433420 732640 57266 851360 1379900 1190200 771020 788510 790060 575320 739970 1 1 1 1 1 1 1 1 1 1 1 465450 784970 5121.3 832430 1458200 1200300 720270 758830 779610 581590 766660 433420 732640 57266 851360 1379900 1190200 771020 788510 790060 575320 739970 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 99556000 99556000 0 14874 2520 13628 77825 94042 94042 1 NTPSEPIHCIVWAK Unmodified 1650.8188 0.81881152 3087 Q9UBT2;Q9UBT2-2 UBA2 SUMO-activating enzyme subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 50.533 51.114 3 6.1057E-05 16320 20211116_3446_TMUAki_TMT10x_S_F7 93.823 79.917 11091000 19318000 304430 23702000 14093000 13698000 11070000 9470300 8979500 10553000 14469000 10329000 18042000 1245300 23720000 13455000 14476000 11322000 9874500 9421300 10262000 13787000 3 3 3 3 3 3 3 3 3 3 3 4190800 6609300 72371 8177400 7472700 8216500 5767400 3205600 3037900 3960700 5076100 3902600 6173000 460860 8232100 7126700 8255400 5854800 3534700 3282300 3837100 4833600 1 1 1 1 1 1 1 1 1 1 1 6900400 12708000 232060 15524000 6620000 5481300 5302400 6264700 5941500 6592100 9392600 6426700 11869000 784440 15488000 6328500 6221000 5467100 6339800 6139000 6424700 8953800 2 2 2 2 2 2 2 2 2 2 2 834750000 578970000 255780000 14875 3087 13629 77826;77827 94043;94044;94045 94045 3 NTSEQDQPMGGWEMIR 2 Oxidation (M) 1909.7935 0.79346098 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 2 0 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 39.877 39.762 3 0.00029309 11521 20211116_3430_TMUAki_TMT10x_P_F3 76.049 64.779 1586400 2455800 4244.4 2900500 3753700 3850400 2438300 1635500 1218600 1576700 1998800 1477000 2293200 149920 2941800 3565400 3814200 2504300 1772800 1320700 1542300 1904000 4 4 2 4 4 4 4 4 4 4 4 1586400 2455800 4244.4 2900500 3753700 3850400 2438300 1635500 1218600 1576700 1998800 1477000 2293200 149920 2941800 3565400 3814200 2504300 1772800 1320700 1542300 1904000 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 165600000 165600000 0 14876 748 13630 77828;77829;77830 94046;94047;94048;94049;94050 94048 866;867 5 NTTIPTK Unmodified 773.42832 0.42831841 615;972 P11142;P11142-2;P54652;P38646 HSPA8;HSPA2;HSPA9 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Stress-70 protein, mitochondrial no no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 33.654 33.705 2 0.018401 8256 20211116_3433_TMUAki_TMT10x_P_F5 89.698 24.446 2316900 3760500 0 3115200 2809700 3828700 2516300 1783200 1865400 1788200 2688100 2157000 3506600 160300 3234200 2684100 3810400 2547600 1916400 1955400 1746200 2567600 2 2 0 2 2 2 2 2 2 2 2 2069400 3276700 0 2747800 2504800 3561100 2184500 1596700 1678800 1598700 2367000 1926600 3055600 141240 2852800 2391300 3533500 2216900 1722600 1754400 1561300 2262100 1 1 0 1 1 1 1 1 1 1 1 247480 483790 0 367340 304820 267590 331860 186510 186610 189520 321060 230410 450990 19061 381480 292810 276930 330710 193810 200970 184970 305550 1 1 0 1 1 1 1 1 1 1 1 127620000 104780000 22840000 14877 615;972 13631 77831;77832;77833 94051;94052 94051 2 NTVEITELPVR Unmodified 1269.6929 0.69286595 1500 Q02880;Q02880-2 TOP2B DNA topoisomerase 2-beta yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 51.514 51.405 2 3.9525E-12 15376 20211116_3442_TMUAki_TMT10x_S_F4 143.79 122.33 8020400 13629000 21334 13723000 14130000 17031000 10945000 12836000 12509000 10764000 12354000 7467400 12718000 696280 14043000 13465000 17051000 11317000 13200000 12652000 10598000 11922000 4 4 2 4 4 4 4 4 4 4 4 5916000 9965000 21334 9762700 11960000 15245000 9068000 9392300 9194100 7947600 9115000 5508400 9297700 570230 10056000 11395000 15061000 9353200 9801600 9345100 7821600 8795400 3 3 2 3 3 3 3 3 3 3 3 2104400 3664200 0 3960600 2169500 1785600 1877500 3443700 3315400 2816800 3238500 1959000 3420200 126050 3987000 2069700 1990400 1964200 3398900 3307200 2776800 3126500 1 1 0 1 1 1 1 1 1 1 1 620720000 532300000 88424000 14878 1500 13632 77834;77835;77836;77837 94053;94054;94055;94056;94057 94057 5 NTVQGFKR Unmodified 948.51411 0.51411372 916 P34932;P34932-2 HSPA4 Heat shock 70 kDa protein 4 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 30.631 30.655 3 0.088049 6280 20211116_3428_TMUAki_TMT10x_P_F1 40.331 23.493 431850 745460 6594.1 603070 555380 688920 506140 499300 535740 458620 573230 402140 695060 43679 626570 531690 692260 516890 516010 545050 449590 551810 2 2 2 2 2 2 2 2 2 2 2 195150 354210 2761.4 254140 329100 455960 282540 275120 293130 235030 284400 181720 330140 20629 269350 314560 447980 289350 287650 297440 231200 274620 1 1 1 1 1 1 1 1 1 1 1 236700 391240 3832.6 348930 226280 232960 223610 224190 242600 223590 288820 220420 364910 23050 357220 217130 244280 227540 228360 247620 218390 277190 1 1 1 1 1 1 1 1 1 1 1 18616000 13732000 4884600 14879 916 13633 77838;77839 94058 94058 1 NTVVLFVPQQEAWVVER Unmodified 2013.0684 0.068360922 3148 Q9UJZ1;Q9UJZ1-2 STOML2 Stomatin-like protein 2, mitochondrial yes no 0 0 0 0 By MS/MS 7 0 1 1 77.602 77.665 2 0.00015289 27279 20211116_3446_TMUAki_TMT10x_S_F7 82.34 69.139 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14880 3148 13634 77840 94059 94059 1 NVADATRPEDLRR Unmodified 1511.7805 0.78045218 2322 Q8WXF0 SRSF12 Serine/arginine-rich splicing factor 12 yes yes 0 0 0 2 By MS/MS 4 0 1 1 29.642 29.681 4 0.0030315 6218 20211116_3431_TMUAki_TMT10x_P_F4 69.92 55.685 249200 382400 0 396450 489380 448160 282540 253020 259960 293610 327550 232030 356870 23532 404230 464010 448980 296710 268320 267850 285080 313880 1 1 0 1 1 1 1 1 1 1 1 249200 382400 0 396450 489380 448160 282540 253020 259960 293610 327550 232030 356870 23532 404230 464010 448980 296710 268320 267850 285080 313880 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18277000 18277000 0 14881 2322 13635 77841 94060 94060 1 NVADDTRSEDLR Unmodified 1389.6484 0.64843495 339 O75494;O75494-3;O75494-4;O75494-5;O75494-6;O75494-2 SRSF10 Serine/arginine-rich splicing factor 10 yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 29.102 29.142 3 3.3953E-05 7255 20211116_3429_TMUAki_TMT10x_P_F2 90.156 64.814 161360 305950 0 266720 244520 236620 214330 147140 172540 149700 221460 150240 285340 14068 274420 233670 240900 217690 154190 179090 146100 212120 2 2 0 2 2 2 2 2 2 2 2 65645 123560 0 106620 127300 148830 84456 78211 74446 72443 96795 61118 115230 5837 110600 120960 147430 87598 82910 76967 70989 92682 1 1 0 1 1 1 1 1 1 1 1 95714 182400 0 160100 117220 87795 129870 68926 98089 77255 124660 89119 170110 8231.2 163820 112710 93475 130090 71281 102120 75108 119440 1 1 0 1 1 1 1 1 1 1 1 12542000 5830900 6711200 14882 339 13636 77842;77843;77844 94061;94062;94063 94062 3 NVADDTRSEDLRR Unmodified 1545.7495 0.74954598 339 O75494;O75494-3;O75494-4;O75494-5;O75494-6;O75494-2 SRSF10 Serine/arginine-rich splicing factor 10 yes no 0 0 0 2 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 26.886 26.634 3;4 0.00068845 6113 20211116_3429_TMUAki_TMT10x_P_F2 82.069 57.216 165350 259500 902.53 226430 186100 216480 176410 148370 153760 152990 220650 153960 242020 14203 233190 178210 219620 178750 154430 159790 149230 210780 3 3 2 3 3 3 3 3 3 3 3 100950 167210 314.21 125190 107800 149750 95087 90315 85642 74558 125610 93993 155870 8120.4 131050 103020 149710 96823 94354 88958 73466 119930 2 2 1 2 2 2 2 2 2 2 2 64402 92293 588.32 101240 78296 66730 81327 58056 68120 78430 95041 59969 86153 6082.2 102130 75185 69914 81926 60075 70834 75759 90849 1 1 1 1 1 1 1 1 1 1 1 26933000 15622000 11311000 14883 339 13637 77845;77846;77847 94064;94065 94064 2 NVALLSQLYHSPAR Unmodified 1567.8471 0.84707518 1825 Q15717;Q15717-2 ELAVL1 ELAV-like protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.745 1 2 3 4 2 55.009 54.804 3 2.5335E-33 17992 20211116_3430_TMUAki_TMT10x_P_F3 225.32 189.59 19892000 32625000 277270 33826000 27593000 38190000 25515000 26898000 26453000 24618000 26879000 18523000 30447000 2012900 34489000 26422000 38383000 26019000 27849000 26886000 24138000 25916000 9 9 8 9 9 9 9 9 9 9 9 13609000 21145000 234160 21946000 21425000 32132000 19637000 17365000 17525000 16464000 17586000 12673000 19733000 1456000 22484000 20513000 31774000 19947000 18374000 17923000 16117000 16963000 4 4 4 4 4 4 4 4 4 4 4 6283000 11480000 43110 11881000 6167400 6058200 5878000 9532900 8928300 8154300 9293000 5850400 10714000 556920 12005000 5908800 6608900 6071900 9475800 8962500 8020700 8953300 5 5 4 5 5 5 5 5 5 5 5 2721900000 1601300000 1120600000 14884 1825 13638 77848;77849;77850;77851;77852;77853 94066;94067;94068;94069;94070;94071;94072;94073;94074;94075;94076 94068 11 NVAQYGLDPATRYPNLNLR Unmodified 2174.1233 0.12325004 2283 Q8TDZ2;Q8TDZ2-2;Q8TDZ2-4 MICAL1 Protein-methionine sulfoxide oxidase MICAL1 yes no 0 0 0 1 By MS/MS 2 0 1 1 57.018 56.767 3 9.4493E-13 18373 20211116_3429_TMUAki_TMT10x_P_F2 137.32 112.76 2093900 3732000 0 3406800 2940500 4818700 3249500 2537000 2210300 2575700 3134900 1949600 3481200 183790 3519600 2827200 4770600 3247700 2695700 2326900 2513900 2995500 1 1 0 1 1 1 1 1 1 1 1 2093900 3732000 0 3406800 2940500 4818700 3249500 2537000 2210300 2575700 3134900 1949600 3481200 183790 3519600 2827200 4770600 3247700 2695700 2326900 2513900 2995500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 250550000 250550000 0 14885 2283 13639 77854 94077 94077 1 NVASVCLQIGYPTVASVPHSIINGYK Unmodified 2786.4425 0.44253527 508 P05388;P05388-2 RPLP0 60S acidic ribosomal protein P0 yes no 0 0 0 0 By MS/MS By matching 4 0 2 1 1 74.388 74.351 4 3.0781E-17 24335 20211116_3431_TMUAki_TMT10x_P_F4 122.41 113.08 1146200 2097200 30821 1823100 1329200 2488000 1564000 1578500 1609000 1696800 1550300 1067500 1955900 126320 1889200 1282300 2473200 1575500 1654300 1632800 1652300 1497300 1 1 1 1 1 1 1 1 1 1 1 1146200 2097200 30821 1823100 1329200 2488000 1564000 1578500 1609000 1696800 1550300 1067500 1955900 126320 1889200 1282300 2473200 1575500 1654300 1632800 1652300 1497300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 546930000 262670000 284260000 14886 508 13640 77855;77856 94078 94078 1 NVCTEAGMFAIR Oxidation (M) 1383.6275 0.62750527 1357 P62333 PSMC6 26S protease regulatory subunit 10B yes yes 0 0 1 0 By MS/MS By MS/MS 5.14 0.639 1 4 2 3 4 47.543 47.706 2;3 0.00080251 12888 20211116_3445_TMUAki_TMT10x_S_F6 83.358 26.98 13965000 24425000 28483 26382000 19011000 23015000 15281000 24570000 26562000 22314000 23034000 13003000 22798000 1168700 26725000 18131000 23689000 16044000 24835000 26403000 21886000 22329000 7 7 3 7 7 7 7 7 7 7 7 4426200 8114400 20378 8357900 9427600 13954000 7022500 7946700 8868100 7760500 7560300 4121400 7572500 456010 8592900 8980400 13735000 7306100 8377300 8894600 7587000 7333700 2 2 2 2 2 2 2 2 2 2 2 9539200 16311000 8104.8 18024000 9583000 9061300 8258400 16623000 17694000 14554000 15474000 8881300 15226000 712670 18132000 9150200 9953800 8738200 16458000 17509000 14299000 14995000 5 5 1 5 5 5 5 5 5 5 5 1424200000 669580000 754580000 14887 1357 13641 77857;77858;77859;77860;77861;77862;77863 94079;94080;94081;94082;94083;94084;94085;94086;94087 94086 1821 9 NVDGFSPKPVTLLASLFK Unmodified 1932.072 0.072049316 2538 Q96Q11;Q96Q11-2 TRNT1 CCA tRNA nucleotidyltransferase 1, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 79.829 79.817 3 1.1772E-40 26029 20211116_3445_TMUAki_TMT10x_S_F6 207.82 187.15 14538000 24124000 265330 21995000 19771000 19218000 19607000 14160000 13250000 14288000 17671000 13539000 22502000 1525900 22547000 18969000 19636000 19700000 14656000 13914000 13949000 16909000 2 2 2 2 2 2 2 2 2 2 2 5398700 8727100 2459.1 7831200 4970800 8593100 6246400 5114900 4889200 5178000 6279500 5026700 8140000 443890 8063800 4798500 8628900 6227300 5377900 5082600 5054500 6014500 1 1 1 1 1 1 1 1 1 1 1 9139600 15397000 262870 14163000 14800000 10625000 13360000 9045300 8360600 9110400 11391000 8511800 14362000 1082000 14483000 14171000 11007000 13473000 9278300 8831800 8895000 10895000 1 1 1 1 1 1 1 1 1 1 1 2930000000 1374300000 1555700000 14888 2538 13642 77864;77865 94088;94089 94089 2 NVDILKDPETVK Unmodified 1369.7453 0.74529545 153 O14980 XPO1 Exportin-1 yes yes 0 0 0 1 By MS/MS 6 0 1 1 51.468 51.599 3 0.10124 14461 20211116_3445_TMUAki_TMT10x_S_F6 39.776 25.214 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14889 153 13643 77866 94090 94090 1 NVDLLSDMVQEHDEPILK Oxidation (M) 2110.0252 0.025235058 1240 P55209;P55209-2;P55209-3 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 0 0 1 0 By MS/MS By MS/MS 3.19 1.29 2 3 4 4 3 9 7 61.173 61.046 3;4 9.6531E-18 18849 20211116_3431_TMUAki_TMT10x_P_F4 154.48 138.36 141890000 259900000 1511300 231980000 159780000 240100000 154920000 211410000 221870000 193620000 206020000 132120000 242410000 11151000 238750000 153080000 243460000 159470000 215860000 222220000 189830000 199230000 27 27 13 27 27 27 27 27 27 27 27 70876000 120990000 937750 104360000 84101000 158610000 84567000 96755000 99302000 86279000 95735000 65997000 112840000 5734400 108450000 80687000 156850000 86212000 101180000 100250000 84696000 92462000 14 14 7 14 14 14 14 14 14 14 14 71017000 138910000 573530 127620000 75678000 81492000 70352000 114650000 122570000 107340000 110290000 66120000 129580000 5416600 130300000 72395000 86609000 73256000 114680000 121970000 105140000 106770000 13 13 6 13 13 13 13 13 13 13 13 22202000000 13421000000 8781100000 14890 1240 13644 77867;77868;77869;77870;77871;77872;77873;77874;77875;77876;77877;77878;77879;77880;77881;77882 94091;94092;94093;94094;94095;94096;94097;94098;94099;94100;94101;94102;94103;94104;94105;94106;94107;94108;94109;94110;94111;94112;94113;94114;94115;94116;94117;94118 94102 1683 28 NVDLLSDMVQEHDEPILK Unmodified 2094.0303 0.030320436 1240 P55209;P55209-2;P55209-3 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.11 1.37 3 4 4 4 4 11 8 73.936 73.846 3;4 1.0562E-63 25821 20211116_3430_TMUAki_TMT10x_P_F3 270.95 253.46 182120000 295760000 1862700 295020000 176120000 182190000 201430000 78014000 62529000 92687000 181880000 169590000 275970000 16400000 299330000 169590000 190220000 198700000 85016000 73926000 89918000 171760000 26 26 20 26 26 26 26 26 26 26 26 98271000 158570000 1018700 154320000 88711000 119250000 113490000 40117000 32152000 47447000 95962000 91507000 147950000 8854500 157210000 85738000 121870000 111300000 45002000 38532000 46037000 90596000 14 14 11 14 14 14 14 14 14 14 14 83853000 137190000 843950 140700000 87404000 62938000 87949000 37896000 30377000 45240000 85921000 78080000 128030000 7545900 142120000 83856000 68351000 87400000 40014000 35394000 43881000 81166000 12 12 9 12 12 12 12 12 12 12 12 42215000000 23560000000 18655000000 14891 1240 13644 77883;77884;77885;77886;77887;77888;77889;77890;77891;77892;77893;77894;77895;77896;77897;77898;77899;77900;77901 94119;94120;94121;94122;94123;94124;94125;94126;94127;94128;94129;94130;94131;94132;94133;94134;94135;94136;94137;94138;94139;94140;94141;94142;94143;94144;94145;94146 94126 28 NVDLSTFYQNR Unmodified 1355.647 0.64697839 386 O94826 TOMM70A Mitochondrial import receptor subunit TOM70 yes yes 0 0 0 0 By MS/MS 7 0 1 1 56.309 57.042 2 9.1347E-14 18145 20211116_3435_TMUAki_TMT10x_P_F7 145.46 130.2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14892 386 13645 77902 94147 94147 1 NVDMLSELVQEYDEPILK Oxidation (M) 2150.0453 0.045301798 2602 Q99733;Q99733-2 NAP1L4 Nucleosome assembly protein 1-like 4 yes no 0 0 1 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 79.588 79.575 3 2.1671E-17 26095 20211116_3428_TMUAki_TMT10x_P_F1 145.62 128.34 11226000 18278000 182880 15443000 10437000 19039000 12625000 11758000 12695000 13027000 14258000 10452000 17045000 868900 16009000 10059000 19010000 12694000 12360000 12967000 12671000 13706000 4 4 1 4 4 4 4 4 4 4 4 8919900 14217000 0 11996000 7496100 15832000 9388200 9232400 10105000 10384000 11334000 8303500 13258000 498370 12452000 7220800 15744000 9446100 9754500 10292000 10095000 10896000 3 3 0 3 3 3 3 3 3 3 3 2306300 4061200 182880 3447600 2940700 3206400 3237100 2525600 2590100 2643000 2923600 2148800 3787200 370530 3556900 2838200 3266100 3248000 2605800 2675200 2576500 2810000 1 1 1 1 1 1 1 1 1 1 1 2913900000 1859800000 1054100000 14893 2602 13646 77903;77904;77905 94148;94149;94150;94151 94148 2840 4 NVDMLSELVQEYDEPILK Unmodified 2134.0504 0.050387176 2602 Q99733;Q99733-2 NAP1L4 Nucleosome assembly protein 1-like 4 yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 81.054 81.043 3 3.8154E-24 26901 20211116_3440_TMUAki_TMT10x_S_F2 175.51 152.37 6270500 9894700 1678.1 10271000 5935100 6921600 7933800 2606600 2259000 3163900 6291300 5837700 9234200 424330 10401000 5735200 7160900 7767400 2884700 2689500 3067100 5944200 2 2 1 2 2 2 2 2 2 2 2 3647100 5463400 0 5854600 3143000 4252100 4197100 1513800 1182700 1788700 3363200 3395100 5099400 202910 5921100 3034200 4369000 4108800 1685500 1412500 1735600 3176800 1 1 0 1 1 1 1 1 1 1 1 2623400 4431300 1678.1 4416100 2792100 2669500 3736700 1092800 1076300 1375200 2928200 2442700 4134800 221430 4480100 2701000 2791900 3658500 1199100 1277000 1331500 2767400 1 1 1 1 1 1 1 1 1 1 1 2692500000 1865200000 827300000 14894 2602 13646 77906;77907;77908 94152;94153;94154 94154 3 NVDSILEDYANYKK Unmodified 1670.8152 0.81516593 3089 Q9UBU8;Q9UBU8-2;Q9UBU8-3 MORF4L1 Mortality factor 4-like protein 1 yes no 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 67.006 67.16 3 0.00019844 20821 20211116_3445_TMUAki_TMT10x_S_F6 83.823 60.944 5599000 10175000 190670 9817200 6512200 6233500 6221500 5398500 4616600 5214500 6963700 5214600 9493100 654690 9986900 6248500 6552600 6276200 5525400 4850100 5100400 6644900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5599000 10175000 190670 9817200 6512200 6233500 6221500 5398500 4616600 5214500 6963700 5214600 9493100 654690 9986900 6248500 6552600 6276200 5525400 4850100 5100400 6644900 1 1 1 1 1 1 1 1 1 1 1 1064900000 0 1064900000 14895 3089 13647 77909;77910 94155 94155 1 NVDVEFFK Unmodified 996.49165 0.49164694 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.71 1.03 1 2 2 2 4 3 62.755 62.788 2 0.00094968 18756 20211116_3444_TMUAki_TMT10x_S_F5 130.96 96.886 114060000 178840000 1156400 204950000 124130000 130490000 113680000 104850000 105960000 106180000 141090000 106200000 166970000 10459000 206120000 118820000 136950000 115610000 107940000 109380000 103650000 135020000 10 10 8 10 10 10 10 10 10 10 10 41400000 63209000 614580 72951000 60827000 73293000 47328000 38222000 38156000 38459000 50318000 38552000 59017000 4277200 73739000 58022000 73857000 48429000 40638000 39650000 37551000 48164000 4 4 4 4 4 4 4 4 4 4 4 72655000 115630000 541800 131990000 63304000 57194000 66349000 66629000 67803000 67726000 90775000 67651000 107960000 6181700 132380000 60795000 63091000 67186000 67301000 69729000 66100000 86856000 6 6 4 6 6 6 6 6 6 6 6 4668200000 2397500000 2270700000 14896 1057 13648 77911;77912;77913;77914;77915;77916;77917 94156;94157;94158;94159;94160;94161;94162;94163;94164;94165;94166 94164 11 NVDVEFFKR Unmodified 1152.5928 0.59275797 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 51.508 51.858 3 0.00032072 16053 20211116_3435_TMUAki_TMT10x_P_F7 118.4 91.889 24444000 39617000 243790 42470000 39423000 41532000 27206000 39133000 34977000 31874000 34943000 22761000 36977000 2463500 43110000 37508000 42314000 28476000 39692000 35242000 31429000 33709000 4 4 4 4 4 4 4 4 4 4 4 10770000 18355000 96800 18530000 23972000 28883000 15537000 18560000 16100000 14863000 16147000 10029000 17128000 1168000 19046000 22779000 28553000 16219000 19281000 16356000 14668000 15575000 2 2 2 2 2 2 2 2 2 2 2 13674000 21262000 146990 23940000 15451000 12650000 11669000 20573000 18877000 17011000 18796000 12733000 19850000 1295500 24065000 14729000 13761000 12257000 20411000 18886000 16761000 18134000 2 2 2 2 2 2 2 2 2 2 2 2042300000 1316700000 725600000 14897 1057 13649 77918;77919;77920;77921 94167;94168;94169;94170 94168 4 NVEDETPQDLTEESLVLLPFDDLK Unmodified 2758.3437 0.34365189 72 O00221 NFKBIE NF-kappa-B inhibitor epsilon yes yes 0 0 0 0 By MS/MS By matching 1.25 0.433 3 1 2 2 81.665 81.652 3 2.3493E-22 26953 20211116_3428_TMUAki_TMT10x_P_F1 142.79 131.95 1420400 2072400 165.01 1973800 1234000 2417700 1539400 1316400 1241200 1362300 1731900 1322600 1933400 115310 2027200 1190900 2410800 1536300 1395300 1293100 1328600 1655500 1 1 1 1 1 1 1 1 1 1 1 1420400 2072400 165.01 1973800 1234000 2417700 1539400 1316400 1241200 1362300 1731900 1322600 1933400 115310 2027200 1190900 2410800 1536300 1395300 1293100 1328600 1655500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 615300000 348400000 266900000 14898 72 13650 77922;77923;77924;77925 94171;94172 94171 2 NVEDFTGPR Unmodified 1033.4829 0.48287317 1285 P61009 SPCS3 Signal peptidase complex subunit 3 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.535 1 5 1 4 3 33.371 33.325 2 6.0846E-06 12436 20211116_3441_TMUAki_TMT10x_S_F3 161.27 136.35 2130900 3434800 1609.1 3941300 3502100 2866600 2530600 2461800 2646000 2061100 3131300 1984000 3206900 193020 3968900 3333400 2977500 2621300 2511400 2704000 2029500 3005600 4 4 2 4 4 4 4 4 4 4 4 752320 1191000 194.49 1366900 2039100 1711800 1011000 886600 970100 742600 1041300 700480 1112000 80575 1387200 1929300 1704100 1078000 938770 991230 731200 1002300 1 1 1 1 1 1 1 1 1 1 1 1378600 2243800 1414.6 2574400 1463100 1154800 1519600 1575200 1675900 1318500 2089900 1283600 2095000 112440 2581700 1404100 1273400 1543300 1572600 1712800 1298300 2003300 3 3 1 3 3 3 3 3 3 3 3 140020000 30852000 109170000 14899 1285 13651 77926;77927;77928;77929;77930;77931;77932 94173;94174;94175;94176;94177;94178;94179;94180 94178 8 NVEDLSGGELQR Unmodified 1315.6368 0.63680763 1303 P61221 ABCE1 ATP-binding cassette sub-family E member 1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 40.86 40.915 2 5.5451E-15 12256 20211116_3430_TMUAki_TMT10x_P_F3 185.3 162.28 403870 617800 0 859400 2006400 1518900 756810 929740 1074200 597970 916130 375950 577380 44710 869530 1891700 1493400 842830 965100 1073300 597680 888650 2 2 0 2 2 2 2 2 2 2 2 403870 617800 0 859400 2006400 1518900 756810 929740 1074200 597970 916130 375950 577380 44710 869530 1891700 1493400 842830 965100 1073300 597680 888650 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 82682000 82682000 0 14900 1303 13652 77933 94181;94182 94181 2 NVEGQDMLYQSLK Oxidation (M) 1539.7239 0.72390808 1391;1557 P63010;P63010-2;P63010-3;Q10567;Q10567-3;Q10567-2;Q10567-4 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 no no 0 0 1 0 By MS/MS 4.5 0.5 1 1 2 52.028 52.211 3 0.0014055 15236 20211116_3431_TMUAki_TMT10x_P_F4 69.716 43.592 6011000 10000000 11559 10919000 12192000 15893000 8776500 10431000 10010000 8723300 9183100 5596900 9334700 595700 11149000 11605000 15761000 9119200 10830000 10101000 8590000 8884200 2 2 2 2 2 2 2 2 2 2 2 6011000 10000000 11559 10919000 12192000 15893000 8776500 10431000 10010000 8723300 9183100 5596900 9334700 595700 11149000 11605000 15761000 9119200 10830000 10101000 8590000 8884200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 364060000 364060000 0 14901 1391;1557 13653 77934;77935 94183;94184 94183 1868 2 NVELTEVGPR Unmodified 1112.5826 0.58258722 2467 Q96G21 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes yes 0 0 0 0 By MS/MS 3 0 1 1 40.671 40.725 2 0.09041 12164 20211116_3430_TMUAki_TMT10x_P_F3 47.334 23.345 261720 375820 18876 488960 676020 526620 292020 271460 276990 262200 331050 243830 351110 45093 491400 639690 528430 315820 288600 284360 256460 317680 1 1 1 1 1 1 1 1 1 1 1 261720 375820 18876 488960 676020 526620 292020 271460 276990 262200 331050 243830 351110 45093 491400 639690 528430 315820 288600 284360 256460 317680 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37709000 37709000 0 14902 2467 13654 77936 94185 94185 1 NVELVEGEEGR Unmodified 1229.5888 0.58879481 1188 P52789 HK2 Hexokinase-2 yes yes 0 0 0 0 By MS/MS 1 0 1 1 38.529 38.416 2 1.4457E-06 11335 20211116_3439_TMUAki_TMT10x_S_F1 133.12 102.05 647870 1074400 4609 1069200 536960 479820 507330 788960 820800 586040 857580 603270 1002500 56455 1082300 514400 532110 525860 780490 822610 580720 826130 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 647870 1074400 4609 1069200 536960 479820 507330 788960 820800 586040 857580 603270 1002500 56455 1082300 514400 532110 525860 780490 822610 580720 826130 1 1 1 1 1 1 1 1 1 1 1 37073000 0 37073000 14903 1188 13655 77937 94186 94186 1 NVEPFTSVLSLPYPFASEINK Unmodified 2351.2049 0.20491398 2729 Q9BYD6 MRPL1 39S ribosomal protein L1, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5 3 2 2 2 2 80.819 80.814 3 4.057E-10 26826 20211116_3440_TMUAki_TMT10x_S_F2 103.4 86.522 4311500 6633900 64460 6413200 4116100 5158400 4173500 2975000 2779700 3287800 4449200 4014600 6189400 374470 6539300 3949400 5283400 4187200 3144300 2948100 3198200 4240300 3 3 1 3 3 3 3 3 3 3 3 2890900 4194300 0 4128400 2151400 3577000 2208500 1999700 1892200 2269100 2936900 2691400 3913500 189000 4208100 2061700 3642600 2227400 2120800 1975900 2205000 2800700 2 2 0 2 2 2 2 2 2 2 2 1420500 2439700 64460 2284800 1964600 1581400 1965000 975340 887590 1018800 1512300 1323100 2275900 185470 2331300 1887700 1640800 1959800 1023500 972280 993190 1439500 1 1 1 1 1 1 1 1 1 1 1 1924600000 1131300000 793300000 14904 2729 13656 77938;77939;77940;77941 94187;94188;94189 94189 3 NVEPLYGFHAQEFIPFR Unmodified 2063.0265 0.026496107 1125 P49848;P49848-3;P49848-4;P49848-2 TAF6 Transcription initiation factor TFIID subunit 6 yes no 0 0 0 0 By MS/MS 8 0 1 1 73.879 73.911 3 4.8524E-11 23928 20211116_3436_TMUAki_TMT10x_P_F8 129.11 110.88 4642500 7368800 66175 6169200 4315000 9506700 5180100 5686200 5760600 5568300 5373200 4323100 6871300 441980 6428200 4163200 9393100 5227100 5970600 5821300 5443100 5195300 2 2 2 2 2 2 2 2 2 2 2 4642500 7368800 66175 6169200 4315000 9506700 5180100 5686200 5760600 5568300 5373200 4323100 6871300 441980 6428200 4163200 9393100 5227100 5970600 5821300 5443100 5195300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 544900000 544900000 0 14905 1125 13657 77942 94190;94191 94190 2 NVFDEAILAALEPPEPK Unmodified 1851.9618 0.96183016 1281 P60953 CDC42 Cell division control protein 42 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 3.65 1.89 5 9 7 5 6 5 2 1 16 24 75.993 75.981 2;3;4 1.5949E-52 28202 20211116_3429_TMUAki_TMT10x_P_F2 260.7 239.32 110520000 175310000 484260 163450000 122100000 148400000 134920000 81057000 78030000 90655000 126510000 102900000 163540000 8728800 167360000 117360000 150590000 134420000 86099000 83592000 88143000 120540000 48 49 19 49 49 49 49 49 49 49 49 53904000 82047000 155010 77552000 45503000 79941000 52589000 38997000 37264000 43583000 60424000 50187000 76542000 4027600 79469000 43788000 80371000 52498000 41853000 39402000 42377000 57572000 20 20 6 20 20 20 20 20 20 20 20 56619000 93263000 329250 85895000 76600000 68459000 82332000 42060000 40766000 47072000 66083000 52715000 86997000 4701200 87886000 73574000 70223000 81926000 44246000 44190000 45767000 62964000 28 29 13 29 29 29 29 29 29 29 29 41498000000 23902000000 17596000000 14906 1281 13658 77943;77944;77945;77946;77947;77948;77949;77950;77951;77952;77953;77954;77955;77956;77957;77958;77959;77960;77961;77962;77963;77964;77965;77966;77967;77968;77969;77970;77971;77972;77973;77974;77975;77976;77977;77978;77979;77980;77981;77982 94192;94193;94194;94195;94196;94197;94198;94199;94200;94201;94202;94203;94204;94205;94206;94207;94208;94209;94210;94211;94212;94213;94214;94215;94216;94217;94218;94219;94220;94221;94222;94223;94224;94225;94226;94227;94228;94229;94230;94231;94232;94233;94234;94235;94236;94237;94238;94239;94240;94241;94242;94243;94244;94245 94198 54 NVFDEAILAALEPPEPKK Unmodified 1980.0568 0.056793183 1281 P60953 CDC42 Cell division control protein 42 homolog yes yes 0 0 0 1 By MS/MS 5.5 0.5 1 1 2 78.939 78.95 3;4 4.6059E-08 25409 20211116_3444_TMUAki_TMT10x_S_F5 103.85 88.597 2786300 4458200 27426 4033900 4335600 2649800 3420300 2186800 2140700 2069800 3072400 2594600 4158400 278270 4124500 4135800 2774400 3477600 2243200 2266900 2026300 2935000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2786300 4458200 27426 4033900 4335600 2649800 3420300 2186800 2140700 2069800 3072400 2594600 4158400 278270 4124500 4135800 2774400 3477600 2243200 2266900 2026300 2935000 1 1 1 1 1 1 1 1 1 1 1 898230000 0 898230000 14907 1281 13659 77983;77984 94246;94247 94246 2 NVFIIGATNRPDIIDPAILRPGR Unmodified 2517.418 0.4179755 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 2 By MS/MS By MS/MS 4.14 0.639 1 4 2 4 3 69.906 69.832 3;4;5 4.0767E-69 21577 20211116_3444_TMUAki_TMT10x_S_F5 246.73 231.13 56382000 99426000 374990 79710000 59489000 87001000 74432000 54685000 53877000 58821000 73233000 52498000 92701000 4225700 82819000 57416000 87455000 74082000 57354000 56397000 57277000 70046000 10 10 4 10 10 10 10 10 10 10 10 34009000 60060000 141740 48863000 35652000 61348000 41307000 33205000 32927000 34886000 45255000 31664000 56001000 2630800 50825000 34313000 61095000 41344000 35231000 34301000 34002000 43274000 6 6 3 6 6 6 6 6 6 6 6 22374000 39365000 233250 30847000 23838000 25653000 33125000 21480000 20951000 23935000 27979000 20834000 36700000 1594900 31993000 23103000 26360000 32737000 22123000 22096000 23275000 26773000 4 4 1 4 4 4 4 4 4 4 4 19817000000 10476000000 9341100000 14908 1235 13660 77985;77986;77987;77988;77989;77990;77991 94248;94249;94250;94251;94252;94253;94254;94255;94256;94257;94258 94257 11 NVFLLGFIPAK Unmodified 1217.7172 0.7172302 2376 Q92900;Q92900-2 UPF1 Regulator of nonsense transcripts 1 yes no 0 0 0 0 By MS/MS 6 0 1 1 79.836 79.828 3 0.0017979 26031 20211116_3445_TMUAki_TMT10x_S_F6 69.01 51.279 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14909 2376 13661 77992 94259 94259 1 NVFNALIR Unmodified 945.5396 0.53960019 1502 Q02978;Q02978-2 SLC25A11 Mitochondrial 2-oxoglutarate/malate carrier protein yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 59.018 58.724 2 0.001257 19656 20211116_3430_TMUAki_TMT10x_P_F3 125.25 82.129 10892000 17839000 0 18631000 13353000 15030000 11615000 12410000 11104000 11638000 14836000 10141000 16649000 803010 18897000 12751000 15475000 11856000 12726000 11451000 11398000 14196000 3 3 0 3 3 3 3 3 3 3 3 4092100 6554800 0 7318500 6888700 9107300 5316100 4661500 4218800 4550200 5876500 3809600 6119100 315430 7438900 6561600 9067700 5440600 4960500 4398800 4448600 5617500 1 1 0 1 1 1 1 1 1 1 1 6800200 11284000 0 11312000 6463900 5922400 6298500 7748100 6885300 7088000 8959200 6331100 10530000 487580 11458000 6189100 6406900 6415600 7765800 7052500 6949700 8578400 2 2 0 2 2 2 2 2 2 2 2 649090000 296430000 352660000 14910 1502 13662 77993;77994;77995;77996 94260;94261;94262;94263 94261 4 NVFNPEAFKPGNTHK Unmodified 1698.8478 0.84780346 1726 Q14690 PDCD11 Protein RRP5 homolog yes yes 0 0 0 1 By MS/MS 1 0 1 1 47.484 47.484 4 0.012207 13022 20211116_3428_TMUAki_TMT10x_P_F1 56.339 42.676 5928300 9019300 44661 10015000 13857000 13346000 8712500 7388100 7747100 6694700 7935600 5520200 8419700 644160 10196000 13160000 13257000 9076500 7791700 7930300 6566900 7649400 2 2 2 2 2 2 2 2 2 2 2 5928300 9019300 44661 10015000 13857000 13346000 8712500 7388100 7747100 6694700 7935600 5520200 8419700 644160 10196000 13160000 13257000 9076500 7791700 7930300 6566900 7649400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 313240000 313240000 0 14911 1726 13663 77997 94264;94265 94265 2 NVGCLQEALQLATSFAQLR Unmodified 2118.0892 0.089172718 1104 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 4 0.953 1 2 4 4 6 5 81.896 81.89 2;3 5.8282E-80 27460 20211116_3431_TMUAki_TMT10x_P_F4 303.07 270.92 10696000 16187000 247380 16618000 13596000 17401000 14676000 11437000 10884000 11791000 13563000 9960500 15106000 976850 16934000 13077000 17545000 14712000 11940000 11333000 11501000 13001000 11 11 6 11 11 11 11 11 11 11 11 6609100 10440000 218770 10472000 8463900 12863000 8368200 7243100 7283000 7504500 8403900 6155300 9741600 770230 10717000 8126000 12830000 8459700 7655700 7496500 7318500 8072300 6 6 4 6 6 6 6 6 6 6 6 4086700 5747200 28608 6145600 5132400 4537800 6307300 4193700 3600600 4286400 5159200 3805200 5364200 206610 6217400 4951100 4714300 6252500 4284000 3836700 4182500 4928700 5 5 2 5 5 5 5 5 5 5 5 8049700000 4339400000 3710300000 14912 1104 13664 77998;77999;78000;78001;78002;78003;78004;78005;78006;78007;78008 94266;94267;94268;94269;94270;94271;94272;94273;94274;94275;94276;94277 94267 12 NVGIFLK Unmodified 789.47487 0.47487467 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 0 0 By MS/MS 2 0.816 1 1 1 3 59.433 59.117 2 0.013978 18081 20211116_3440_TMUAki_TMT10x_S_F2 94.407 38.285 14099000 23015000 0 25324000 12944000 14044000 13871000 16210000 16210000 16863000 18555000 13127000 21484000 1129800 25503000 12433000 15051000 14094000 16392000 16472000 16443000 17827000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14099000 23015000 0 25324000 12944000 14044000 13871000 16210000 16210000 16863000 18555000 13127000 21484000 1129800 25503000 12433000 15051000 14094000 16392000 16472000 16443000 17827000 2 2 0 2 2 2 2 2 2 2 2 881530000 0 881530000 14913 3317 13665 78009;78010;78011 94278;94279 94279 2 NVGIFLKNEDEEEEEEEKDEAEDLLGR Unmodified 3177.4473 0.44734169 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 0 2 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 73.826 73.694 4 1.4215E-41 23555 20211116_3428_TMUAki_TMT10x_P_F1 182.41 175.75 87710000 154130000 318870 117670000 113430000 129070000 121020000 97325000 88305000 93881000 122560000 81666000 143690000 7474400 122790000 108940000 130070000 121350000 100450000 92482000 91831000 117170000 9 9 4 9 9 9 9 9 9 9 9 39276000 71409000 234210 53569000 38473000 74623000 55649000 46181000 40041000 41345000 56128000 36571000 66566000 3345900 56224000 37328000 74083000 55066000 48245000 41989000 40579000 53646000 3 3 2 3 3 3 3 3 3 3 3 48434000 82724000 84666 64103000 74956000 54448000 65372000 51144000 48264000 52536000 66436000 45095000 77121000 4128400 66567000 71614000 55990000 66281000 52208000 50493000 51252000 63526000 6 6 2 6 6 6 6 6 6 6 6 36035000000 19070000000 16965000000 14914 3317 13666 78012;78013;78014;78015;78016;78017 94280;94281;94282;94283;94284;94285;94286;94287;94288 94280 9 NVGLDIEAEVPAVK Unmodified 1452.7824 0.78240924 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 By MS/MS By MS/MS 3.19 1.29 2 3 4 4 3 8 8 67.397 67.252 2;3 1.2544E-37 21429 20211116_3431_TMUAki_TMT10x_P_F4 253.79 224.01 52224000 88449000 202630 87914000 56619000 65692000 62168000 43363000 47550000 49471000 65488000 48624000 82530000 4226200 89392000 54418000 67792000 62317000 45398000 49651000 48064000 62618000 11 11 5 11 11 11 11 11 11 11 11 22278000 35543000 47054 35997000 24488000 37114000 27276000 17986000 19524000 20548000 27298000 20742000 33167000 1685000 36707000 23538000 37311000 27282000 19329000 20478000 19963000 26093000 4 4 1 4 4 4 4 4 4 4 4 29945000 52906000 155570 51917000 32131000 28578000 34892000 25377000 28026000 28922000 38190000 27882000 49364000 2541200 52685000 30880000 30481000 35035000 26070000 29173000 28101000 36526000 7 7 4 7 7 7 7 7 7 7 7 9411700000 4200400000 5211400000 14915 1146 13667 78018;78019;78020;78021;78022;78023;78024;78025;78026;78027;78028;78029;78030;78031;78032;78033 94289;94290;94291;94292;94293;94294;94295;94296;94297;94298;94299;94300;94301;94302;94303;94304 94295 16 NVGMPIAMLLHTDGAHERPGGDATVTISHR 2 Oxidation (M) 3184.5506 0.55059894 664 P13995;P13995-2 MTHFD2 Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase yes no 0 0 2 1 By MS/MS 6.5 0.5 1 1 2 44.367 44.712 6 3.8264E-06 11526 20211116_3445_TMUAki_TMT10x_S_F6 66.501 56.915 2436300 4305400 0 4498000 2256700 2142900 2020200 3900100 3567900 2891700 3718500 2268200 4018200 181090 4539900 2156700 2367800 2109400 3846400 3567400 2865700 3582400 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2436300 4305400 0 4498000 2256700 2142900 2020200 3900100 3567900 2891700 3718500 2268200 4018200 181090 4539900 2156700 2367800 2109400 3846400 3567400 2865700 3582400 2 2 0 2 2 2 2 2 2 2 2 228080000 0 228080000 14916 664 13668 78034;78035 94305 94305 725;726 1 NVGQFSGFPFEK Unmodified 1355.651 0.65100113 942 P35659;P35659-2 DEK Protein DEK yes no 0 0 0 0 By MS/MS By MS/MS 5 3.19 5 4 4 6 7 68.857 68.988 2;3 1.9767E-16 21306 20211116_3447_TMUAki_TMT10x_S_F8 205.56 148.38 83105000 139120000 919840 128670000 97566000 138070000 100530000 123300000 105560000 106220000 118970000 77382000 129770000 7549500 132140000 93655000 139750000 101970000 125600000 107650000 104440000 114360000 18 18 9 18 18 18 18 18 18 18 18 47411000 75869000 470670 70987000 52544000 96394000 59570000 69928000 58864000 59485000 65777000 44145000 70776000 4189800 73143000 50570000 96038000 60036000 72121000 60160000 58526000 63239000 9 9 3 9 9 9 9 9 9 9 9 35694000 63251000 449160 57685000 45022000 41679000 40957000 53371000 46697000 46734000 53198000 33237000 58999000 3359800 59002000 43085000 43709000 41935000 53475000 47486000 45916000 51117000 9 9 6 9 9 9 9 9 9 9 9 9294700000 5215100000 4079600000 14917 942 13669 78036;78037;78038;78039;78040;78041;78042;78043;78044;78045;78046;78047;78048 94306;94307;94308;94309;94310;94311;94312;94313;94314;94315;94316;94317;94318;94319;94320;94321;94322;94323;94324;94325;94326 94325 21 NVHFASVVNSFIEK Unmodified 1589.8202 0.82019173 2962 Q9NV35 NUDT15 Probable 8-oxo-dGTP diphosphatase NUDT15 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 66.477 66.209 3 2.0841E-06 22226 20211116_3429_TMUAki_TMT10x_P_F2 109.07 94.816 10336000 17984000 136950 17374000 12347000 13853000 12008000 11236000 10692000 11261000 13899000 9624800 16778000 962950 17715000 11835000 14271000 12157000 11557000 11049000 10997000 13308000 4 4 3 4 4 4 4 4 4 4 4 3109100 4984000 90697 4708700 3169200 5841700 3816300 2984300 2723000 2756100 3859800 2895500 4649600 343130 4840000 3060500 5817000 3803300 3171600 2858400 2701200 3688200 1 1 1 1 1 1 1 1 1 1 1 7227300 13000000 46257 12665000 9177900 8011600 8191700 8252000 7969200 8505300 10039000 6729300 12129000 619810 12875000 8775000 8454100 8353900 8385500 8190500 8296300 9620000 3 3 2 3 3 3 3 3 3 3 3 706010000 533300000 172720000 14918 2962 13670 78049;78050 94327;94328;94329;94330 94327 4 NVHGINFVSPVR Unmodified 1337.7204 0.7204181 1208 P53634 CTSC Dipeptidyl peptidase 1;Dipeptidyl peptidase 1 exclusion domain chain;Dipeptidyl peptidase 1 heavy chain;Dipeptidyl peptidase 1 light chain yes yes 0 0 0 0 By MS/MS By MS/MS 4.14 3.09 2 2 1 2 4 3 42.439 42.481 3 2.2986E-12 12540 20211116_3429_TMUAki_TMT10x_P_F2 173.37 143.11 4939900 7616600 53267 9049500 8164100 7884000 5751200 7518300 6913300 6251000 7936100 4599900 7112400 500920 9113300 7770500 8095400 5995800 7624600 7018500 6157300 7624000 8 8 7 8 8 8 8 8 8 8 8 2484300 3658900 20270 4376700 5939300 5908200 3553100 3919000 3411700 3063500 4067200 2313300 3416800 273240 4437200 5636100 5879700 3724500 4059300 3500300 3027200 3903200 4 4 4 4 4 4 4 4 4 4 4 2455600 3957700 32997 4672800 2224800 1975800 2198100 3599300 3501600 3187500 3868800 2286600 3695600 227680 4676200 2134400 2215600 2271400 3565300 3518200 3130100 3720800 4 4 3 4 4 4 4 4 4 4 4 2261100000 1544800000 716240000 14919 1208 13671 78051;78052;78053;78054;78055;78056;78057 94331;94332;94333;94334;94335;94336;94337;94338 94332 8 NVHQRPTVALLCGPHVK Unmodified 1925.0418 0.041769016 2457 Q96F86 EDC3 Enhancer of mRNA-decapping protein 3 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 35.771 35.623 5 7.2119E-11 11247 20211116_3441_TMUAki_TMT10x_S_F3 130.39 99.395 2995100 4673100 0 4502600 5477100 5358700 3717800 3701800 3489700 3407900 4123000 2788400 4359900 236670 4618200 5204400 5369000 3856000 3838500 3582600 3340400 3957700 3 3 0 3 3 3 3 3 3 3 3 2519300 3851800 0 3676400 5016900 4942100 3221600 3026100 2903900 2831400 3430800 2345300 3593500 198330 3781900 4762400 4913500 3351800 3167600 2986800 2773300 3293300 2 2 0 2 2 2 2 2 2 2 2 475810 821250 0 826150 460140 416610 496230 675670 585830 576540 692140 443020 766330 38338 836340 442050 455500 504240 670930 595840 567160 664390 1 1 0 1 1 1 1 1 1 1 1 286910000 232390000 54526000 14920 2457 13672 78058;78059;78060 94339;94340;94341 94341 3 NVIDGDLCEQFNSMEPNK Oxidation (M) 2124.9092 0.90921902 1798 Q15393;Q15393-3 SF3B3 Splicing factor 3B subunit 3 yes no 0 0 1 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 59.382 59.203 3 1.3505E-06 19827 20211116_3430_TMUAki_TMT10x_P_F3 99.044 83.102 8934600 15917000 76106 14548000 11032000 15001000 10110000 12627000 13324000 13107000 13445000 8318900 14847000 764410 14944000 10555000 15201000 10403000 12972000 13419000 12781000 12966000 4 4 1 4 4 4 4 4 4 4 4 3339200 5720900 0 5292500 4721900 8703000 4744300 4699600 5139800 5101100 4846500 3108600 5336600 229920 5480500 4523800 8565700 4823400 4992300 5201100 4965500 4684300 2 2 0 2 2 2 2 2 2 2 2 5595300 10196000 76106 9255000 6310500 6297800 5365600 7927400 8184200 8005900 8598500 5210300 9510800 534490 9463900 6031000 6634800 5579200 7980200 8217400 7815800 8281900 2 2 1 2 2 2 2 2 2 2 2 1336700000 779660000 557010000 14921 1798 13673 78061;78062 94342;94343;94344;94345 94342 2421 4 NVIEAVYNR Unmodified 1076.5615 0.56145784 944 P35813;P35813-3 PPM1A Protein phosphatase 1A yes no 0 0 0 0 By MS/MS 6 0 1 1 46.203 46.286 2 0.0051655 11945 20211116_3434_TMUAki_TMT10x_P_F6 73.985 38.105 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14922 944 13674 78063 94346 94346 1 NVIESATVCHLRPAR Unmodified 1721.8995 0.89952145 1743 Q149N8;Q149N8-4 SHPRH E3 ubiquitin-protein ligase SHPRH yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 35.306 35.289 4 5.4643E-14 8070 20211116_3428_TMUAki_TMT10x_P_F1 142.85 119.02 686750 1025000 27348 1253800 1276700 1175500 689050 741770 793900 696660 952830 639630 957300 90686 1261800 1211100 1192600 732900 774720 808700 682250 914240 2 2 2 2 2 2 2 2 2 2 2 419300 589210 21897 759530 1046600 952420 496830 443080 463750 421320 588730 390570 550430 63955 765700 991010 946920 531670 475550 477670 412380 564060 1 1 1 1 1 1 1 1 1 1 1 267450 435800 5450.7 494300 230170 223030 192220 298690 330140 275330 364100 249060 406870 26731 496080 220070 245640 201230 299170 331030 269870 350180 1 1 1 1 1 1 1 1 1 1 1 103860000 38997000 64859000 14923 1743 13675 78064;78065 94347;94348 94347 2 NVIFQPVAELKK Unmodified 1384.8078 0.80783613 1487 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 1 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 60.136 59.873 3 8.0053E-09 19590 20211116_3429_TMUAki_TMT10x_P_F2 142.38 120.39 30831000 55077000 275330 53033000 53489000 62710000 39661000 69842000 58826000 51522000 54631000 28706000 51385000 2781600 54391000 50934000 63448000 41546000 70102000 58858000 51073000 52831000 7 7 2 7 7 7 7 7 7 7 7 13898000 24876000 243810 25235000 35104000 45249000 24716000 35476000 29238000 24589000 26853000 12939000 23214000 1361300 26018000 33392000 44643000 25753000 36237000 29462000 24463000 25978000 2 2 1 2 2 2 2 2 2 2 2 16933000 30200000 31522 27798000 18385000 17461000 14945000 34366000 29589000 26933000 27778000 15766000 28171000 1420300 28373000 17542000 18806000 15792000 33865000 29396000 26610000 26853000 5 5 1 5 5 5 5 5 5 5 5 2132600000 1220500000 912110000 14924 1487 13676 78066;78067;78068 94349;94350;94351;94352;94353;94354;94355 94349 7 NVIGLQMGTNR Oxidation (M) 1217.6187 0.61865515 965 P37802;P37802-2 TAGLN2 Transgelin-2 yes no 0 0 1 0 By MS/MS By MS/MS 5.78 2.66 2 2 2 3 6 3 35.355 35.6 2;3 0.0026441 7471 20211116_3447_TMUAki_TMT10x_S_F8 68.436 53.769 1559300 2533000 46096 2814000 2635700 2447500 1887200 1700600 1810600 1485000 2276400 1452200 2364600 183070 2845400 2511000 2499200 1951000 1760300 1861900 1459200 2181600 11 11 8 11 11 11 11 11 11 11 11 1003500 1543000 18945 1720900 2102400 1947300 1297500 1004400 1048100 879930 1392300 934440 1440500 113140 1746400 1996600 1948600 1350500 1065000 1089400 864510 1332500 7 7 5 7 7 7 7 7 7 7 7 555810 989930 27151 1093100 533320 500260 589680 696230 762510 605050 884090 517710 924100 69929 1099000 514360 550600 600540 695260 772470 594680 849080 4 4 3 4 4 4 4 4 4 4 4 164850000 121030000 43815000 14925 965 13677 78069;78070;78071;78072;78073;78074;78075;78076;78077 94356;94357;94358;94359;94360;94361;94362;94363;94364;94365;94366 94366 1219 11 NVIGLQMGTNR Unmodified 1201.6237 0.62374052 965 P37802;P37802-2 TAGLN2 Transgelin-2 yes no 0 0 0 0 By MS/MS 1 0 1 1 46.273 46.273 2 1.1988E-07 12511 20211116_3428_TMUAki_TMT10x_P_F1 121.93 100.25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14926 965 13677 78078 94367 94367 1 NVIHPFLSR Unmodified 1081.6033 0.60326308 820 P26640;P26640-2 VARS Valine--tRNA ligase yes no 0 0 0 0 By MS/MS By MS/MS 2.8 1.89 2 3 4 1 5 5 39.941 39.875 2;3 2.3128E-06 11177 20211116_3430_TMUAki_TMT10x_P_F3 167.12 137.36 5585400 9182200 72339 9809800 8524700 8243800 6161500 7060100 6919700 5980800 7810100 5201100 8570300 563890 9939900 8118400 8468200 6396900 7205700 7038000 5885700 7506500 12 12 10 12 12 12 12 12 12 12 12 2569900 4121100 32121 4133600 5704100 5844500 3441600 3163900 3042100 2841300 3441000 2393000 3845500 279880 4241600 5413900 5788200 3596900 3342400 3126500 2788200 3307000 7 7 6 7 7 7 7 7 7 7 7 3015500 5061100 40218 5676300 2820600 2399300 2719900 3896200 3877500 3139600 4369100 2808100 4724800 284000 5698300 2704400 2680000 2800000 3863200 3911500 3097500 4199500 5 5 4 5 5 5 5 5 5 5 5 1473500000 925800000 547700000 14927 820 13678 78079;78080;78081;78082;78083;78084;78085;78086;78087;78088 94368;94369;94370;94371;94372;94373;94374;94375;94376;94377;94378;94379 94373 12 NVIISSAAERPLEIR Unmodified 1666.9366 0.93661847 1427 P78346;P78346-2 RPP30 Ribonuclease P protein subunit p30 yes no 0 0 0 1 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 49.501 49.651 3 3.4431E-34 15201 20211116_3435_TMUAki_TMT10x_P_F7 203.53 168.33 2789000 4259800 33871 4664000 2546400 2337600 2329000 4198100 3523600 3180500 3969600 2597100 3976400 259390 4694700 2438200 2566700 2410800 4144000 3548200 3148200 3815500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2789000 4259800 33871 4664000 2546400 2337600 2329000 4198100 3523600 3180500 3969600 2597100 3976400 259390 4694700 2438200 2566700 2410800 4144000 3548200 3148200 3815500 1 1 1 1 1 1 1 1 1 1 1 463690000 0 463690000 14928 1427 13679 78089;78090;78091 94380;94381;94382 94381 3 NVIIWGNHSSTQYPDVNHAK Unmodified 2279.1083 0.10832826 988 P40925;P40925-3;P40925-2 MDH1 Malate dehydrogenase, cytoplasmic yes no 0 0 0 0 By MS/MS 2 0 1 1 46.114 45.822 4 9.7473E-42 13908 20211116_3429_TMUAki_TMT10x_P_F2 211.13 195.89 2096400 3459600 72325 4281700 5034500 5105400 3592900 2202200 2078100 2028500 2868000 1952500 3231300 282360 4322300 4795400 5085000 3672900 2380400 2208400 1988300 2742200 2 2 2 2 2 2 2 2 2 2 2 2096400 3459600 72325 4281700 5034500 5105400 3592900 2202200 2078100 2028500 2868000 1952500 3231300 282360 4322300 4795400 5085000 3672900 2380400 2208400 1988300 2742200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 442830000 442830000 0 14929 988 13680 78092 94383;94384 94383 2 NVINTFTQTAHSGR Unmodified 1544.7696 0.76955314 771 P22570;P22570-4;P22570-2;P22570-7;P22570-3 FDXR NADPH:adrenodoxin oxidoreductase, mitochondrial yes no 0 0 0 0 By MS/MS 2 0 1 1 39.028 39.113 3 0.0015605 9821 20211116_3440_TMUAki_TMT10x_S_F2 63.31 50.302 366950 573520 9332.3 650250 330030 282100 286260 507450 529070 434400 532210 341730 535450 38603 652440 315910 315160 300170 502380 527720 427270 513300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 366950 573520 9332.3 650250 330030 282100 286260 507450 529070 434400 532210 341730 535450 38603 652440 315910 315160 300170 502380 527720 427270 513300 1 1 1 1 1 1 1 1 1 1 1 18290000 0 18290000 14930 771 13681 78093 94385 94385 1 NVIPSVTR Unmodified 884.50797 0.50796571 2630 Q9BQP7 MGME1 Mitochondrial genome maintenance exonuclease 1 yes yes 0 0 0 0 By MS/MS 8 0 1 1 36.237 36.756 2 0.047034 8067 20211116_3447_TMUAki_TMT10x_S_F8 64.265 26.706 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14931 2630 13682 78094 94386 94386 1 NVKVEVAATER Unmodified 1214.6619 0.66190017 587 P09884 POLA1 DNA polymerase alpha catalytic subunit yes yes 0 0 0 1 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 33.863 33.877 3 0.00086598 8402 20211116_3442_TMUAki_TMT10x_S_F4 80.746 51.982 944310 1510000 5153.4 1406600 1605000 1779300 1089000 991900 918690 861880 1239200 879280 1408600 92346 1447900 1526300 1772000 1126300 1044300 953440 847120 1185500 2 2 2 2 2 2 2 2 2 2 2 832100 1319100 2357.7 1204800 1464700 1676000 969060 895950 825830 766100 1070100 774790 1230400 80044 1244200 1392100 1660800 1004400 946420 855070 753570 1024700 1 1 1 1 1 1 1 1 1 1 1 112200 190880 2795.7 201860 140340 103350 119950 95950 92862 95780 169090 104490 178150 12302 203690 134220 111200 121900 97924 98361 93551 160750 1 1 1 1 1 1 1 1 1 1 1 70205000 66970000 3235900 14932 587 13683 78095;78096;78097 94387;94388 94388 2 NVLCGNIPPDLFAR Unmodified 1584.8082 0.80824683 776 P23193;P23193-2 TCEA1 Transcription elongation factor A protein 1 yes no 0 0 0 0 By MS/MS 8 0 1 1 71.061 71.124 2 0.00046248 22750 20211116_3436_TMUAki_TMT10x_P_F8 79.152 53.493 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14933 776 13684 78098 94389 94389 1 NVLDGELLNR Unmodified 1141.6091 0.60913632 1558 Q10570 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 53.324 53.43 2 1.2214E-08 16246 20211116_3442_TMUAki_TMT10x_S_F4 131.52 90.635 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14934 1558 13685 78099;78100 94390;94391 94391 2 NVLGHMQQGGAPSPFDR Oxidation (M) 1825.853 0.85296519 1487 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 1 0 By MS/MS By MS/MS 6.67 0.943 1 3 3 2 6 3 33.53 33.739 3 2.1961E-08 11021 20211116_3446_TMUAki_TMT10x_S_F7 118.62 107.25 3086600 5188800 63304 6121300 6538900 6520900 4010100 4205900 4876000 3900100 4654200 2874300 4845200 353330 6184900 6209400 6566400 4226600 4384000 4914700 3821600 4496600 13 13 8 13 13 13 13 13 13 13 13 2119400 3629700 60157 4374000 5704000 5810200 3367800 3027200 3533100 2833000 3373400 1973800 3389700 277970 4431100 5413900 5767900 3543400 3212500 3581400 2774800 3259100 9 9 7 9 9 9 9 9 9 9 9 967160 1559100 3147.2 1747400 834920 710640 642270 1178700 1342800 1067100 1280900 900490 1455500 75368 1753800 795520 798410 683240 1171500 1333300 1046800 1237500 4 4 1 4 4 4 4 4 4 4 4 506780000 434690000 72089000 14935 1487 13686 78101;78102;78103;78104;78105;78106;78107;78108;78109 94392;94393;94394;94395;94396;94397;94398;94399;94400;94401;94402;94403;94404;94405 94403 2017 14 NVLGHMQQGGAPSPFDR Unmodified 1809.8581 0.85805057 1487 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 45.225 45.264 3 1.8412E-29 11686 20211116_3447_TMUAki_TMT10x_S_F8 187.56 158.25 3542800 5886900 16497 6468000 5585400 6394300 4120100 4107300 4180300 3822500 4585800 3298800 5495200 334550 6556300 5319500 6467300 4257600 4282900 4264500 3745000 4411200 3 3 2 3 3 3 3 3 3 3 3 2476200 3923100 16497 4424600 4694900 5544200 3200100 2653300 2806200 2566500 3022000 2305700 3662600 251740 4495100 4465100 5514000 3311900 2841000 2879700 2510100 2908500 2 2 2 2 2 2 2 2 2 2 2 1066600 1963700 0 2043500 890530 850150 920000 1454100 1374100 1256100 1563800 993080 1832700 82804 2061200 854420 953250 945710 1442000 1384800 1234900 1502700 1 1 0 1 1 1 1 1 1 1 1 515600000 311910000 203690000 14936 1487 13686 78110;78111;78112 94406;94407;94408;94409 94409 4 NVLGHMQQGGAPSPFDRNFGTK Oxidation (M) 2373.1284 0.12841177 1487 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 1 1 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 44.323 44.224 4 3.4747E-15 11916 20211116_3440_TMUAki_TMT10x_S_F2 139.95 125.96 9553600 16489000 192520 16664000 15179000 19632000 11460000 17213000 17708000 15012000 15625000 8896600 15386000 770580 17032000 14471000 19762000 12012000 17557000 17667000 14752000 15137000 7 7 4 7 7 7 7 7 7 7 7 6130300 10478000 79182 10354000 11715000 16599000 9157800 9800400 10873000 9432200 10014000 5708500 9776400 395410 10665000 11173000 16372000 9476000 10296000 10956000 9227200 9686600 4 4 3 4 4 4 4 4 4 4 4 3423300 6010800 113340 6309700 3464000 3033200 2301900 7412100 6834800 5579300 5611100 3188100 5609800 375170 6366800 3298100 3390600 2536000 7260300 6711500 5524600 5450700 3 3 1 3 3 3 3 3 3 3 3 1065100000 820770000 244350000 14937 1487 13687 78113;78114;78115 94410;94411;94412;94413;94414;94415;94416 94414 2017 7 NVLGHMQQGGSPTPFDR Oxidation (M) 1855.8635 0.86352988 552 P08237;P08237-3;P08237-2 PFKM ATP-dependent 6-phosphofructokinase, muscle type yes no 0 0 1 0 By MS/MS By MS/MS 6 1 1 1 1 1 36.141 36.47 3 2.1961E-08 9294 20211116_3433_TMUAki_TMT10x_P_F5 118.62 102.22 405850 640300 305.73 764630 841290 836820 384940 481660 523870 403270 550700 377870 597930 37539 772340 795050 840060 418620 505290 527820 397090 530410 2 2 1 2 2 2 2 2 2 2 2 380930 595060 0 702510 808600 817530 364960 449570 490850 375650 511390 354660 555660 35079 710810 764000 817480 397290 473450 494570 369920 492690 1 1 0 1 1 1 1 1 1 1 1 24918 45235 305.73 62114 32692 19284 19978 32083 33021 27624 39309 23204 42272 2459.7 61534 31045 22575 21333 31840 33245 27163 37725 1 1 1 1 1 1 1 1 1 1 1 88680000 76602000 12078000 14938 552 13688 78116;78117 94417;94418 94417 504 2 NVLGHMQQGGSPTPFDR Unmodified 1839.8686 0.86861526 552 P08237;P08237-3;P08237-2 PFKM ATP-dependent 6-phosphofructokinase, muscle type yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 43.2 43.454 3 1.3139E-37 11483 20211116_3436_TMUAki_TMT10x_P_F8 218.43 200.93 1090300 1892400 20349 2276000 1405100 1389400 1118600 1140900 1241700 1125500 1498500 1015300 1767200 110050 2281500 1341100 1464500 1153500 1172000 1266900 1099900 1437600 3 3 2 3 3 3 3 3 3 3 3 375210 643870 12614 743750 806470 845650 515550 438310 446790 394640 527440 349450 601170 48904 753220 766730 846050 536030 464900 460400 387220 506310 1 1 1 1 1 1 1 1 1 1 1 715120 1248500 7734.8 1532200 598650 543720 603070 702570 794890 730870 971090 665870 1166000 61145 1528300 574350 618450 617420 707150 806520 712640 931320 2 2 1 2 2 2 2 2 2 2 2 223390000 83627000 139760000 14939 552 13688 78118;78119;78120;78121 94419;94420;94421;94422 94420 4 NVLGLVPQALPK Unmodified 1247.7602 0.76015765 2186 Q8N1G0;Q8N1G0-2 ZNF687 Zinc finger protein 687 yes no 0 0 0 0 By MS/MS 3 0 1 1 71.547 71.325 3 0.00019776 24761 20211116_3430_TMUAki_TMT10x_P_F3 84.479 66.748 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14940 2186 13689 78122 94423 94423 1 NVLIEVNPQTR Unmodified 1281.7041 0.70409934 2383 Q92979 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.25 0.433 3 1 1 3 47.488 47.657 2;3 5.5449E-07 12551 20211116_3444_TMUAki_TMT10x_S_F5 138.25 108.06 10377000 17777000 63377 19470000 12450000 11572000 10272000 14060000 13501000 12122000 15412000 9662200 16595000 928250 19625000 11885000 12332000 10634000 14111000 13662000 11919000 14808000 6 6 4 6 6 6 6 6 6 6 6 1693700 3163000 0 3181300 4095300 4167400 2532100 2815900 2611100 2151300 2713200 1577000 2951400 168940 3258900 3887200 4154300 2652600 2911300 2656500 2128500 2614200 1 1 0 1 1 1 1 1 1 1 1 8683200 14614000 63377 16289000 8354200 7404700 7740400 11244000 10890000 9970600 12699000 8085200 13643000 759320 16366000 7997800 8177700 7981000 11200000 11005000 9790200 12194000 5 5 4 5 5 5 5 5 5 5 5 711920000 268030000 443880000 14941 2383 13690 78123;78124;78125;78126 94424;94425;94426;94427;94428;94429 94425 6 NVLITDFFGSVR Unmodified 1366.7245 0.72450043 2353 Q92643;Q92643-2 PIGK GPI-anchor transamidase yes no 0 0 0 0 By MS/MS 2 0 1 1 78.957 78.933 2 1.2233E-15 26034 20211116_3440_TMUAki_TMT10x_S_F2 174.77 138.43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14942 2353 13691 78127 94430 94430 1 NVLLDPQLVPGGGASEMAVAHALTEK Oxidation (M) 2632.3531 0.35305156 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 1 0 By MS/MS By MS/MS 6.3 1.33 3 4 4 7 5 13 10 66.337 66.355 3;4 2.5093E-17 24444 20211116_3434_TMUAki_TMT10x_P_F6 123.79 107.67 184260000 332610000 1583800 258170000 236770000 335090000 251760000 272460000 262380000 265910000 278580000 171560000 310080000 14661000 269780000 227350000 335210000 254920000 279980000 267040000 259980000 268240000 35 35 17 35 35 35 35 35 35 35 35 87282000 150040000 914470 119500000 81830000 190190000 104420000 126310000 119010000 119110000 124400000 81269000 139890000 6832400 125120000 79040000 187960000 105180000 131430000 120630000 116630000 119830000 19 19 10 19 19 19 19 19 19 19 19 96981000 182570000 669290 138670000 154940000 144890000 147350000 146150000 143370000 146800000 154190000 90291000 170190000 7829000 144660000 148300000 147250000 149730000 148550000 146410000 143350000 148410000 16 16 7 16 16 16 16 16 16 16 16 67298000000 30621000000 36677000000 14943 1094 13692 78128;78129;78130;78131;78132;78133;78134;78135;78136;78137;78138;78139;78140;78141;78142;78143;78144;78145;78146;78147;78148;78149;78150 94431;94432;94433;94434;94435;94436;94437;94438;94439;94440;94441;94442;94443;94444;94445;94446;94447;94448;94449;94450;94451;94452;94453;94454;94455;94456;94457;94458;94459;94460;94461;94462;94463;94464;94465;94466 94438 1453 36 NVLLDPQLVPGGGASEMAVAHALTEK Unmodified 2616.3581 0.35813694 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 By MS/MS By MS/MS 6.31 1.32 2 1 4 3 3 8 5 77.79 77.799 3;4 2.4294E-30 27343 20211116_3446_TMUAki_TMT10x_S_F7 162.82 156.32 63679000 105900000 280370 102190000 76341000 67142000 77964000 31435000 25529000 37626000 70463000 59290000 98804000 5242500 103990000 73235000 69759000 77375000 33949000 29860000 36493000 66582000 13 13 6 13 13 13 13 13 13 13 13 26651000 44537000 158580 42498000 25413000 37113000 30804000 15706000 14063000 18503000 29812000 24814000 41550000 2034700 43418000 24501000 37659000 30446000 17133000 15598000 17956000 28271000 8 8 4 8 8 8 8 8 8 8 8 37028000 61365000 121790 59693000 50929000 30029000 47160000 15729000 11466000 19123000 40651000 34476000 57254000 3207900 60571000 48734000 32100000 46929000 16816000 14262000 18537000 38311000 5 5 2 5 5 5 5 5 5 5 5 27789000000 12885000000 14904000000 14944 1094 13692 78151;78152;78153;78154;78155;78156;78157;78158;78159;78160;78161;78162;78163 94467;94468;94469;94470;94471;94472;94473;94474;94475;94476;94477;94478;94479;94480;94481 94478 15 NVLSLTNKGEVFNELVGK Unmodified 1960.0629 0.062941193 510 P05556-4;P05556-3;P05556;P05556-2;P05556-5 ITGB1 Integrin beta-1 yes no 0 0 0 1 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 76.611 76.572 3 3.5294E-58 25073 20211116_3440_TMUAki_TMT10x_S_F2 251.7 229.23 46140000 79556000 359480 68161000 55657000 72325000 57176000 45667000 45041000 45341000 60254000 42962000 74191000 4089000 70403000 53413000 72824000 57541000 47767000 46892000 44296000 57653000 4 4 3 4 4 4 4 4 4 4 4 23057000 39863000 248970 35370000 23024000 44487000 27380000 24073000 23778000 23816000 30472000 21471000 37180000 2143200 36537000 22201000 44300000 27434000 25498000 24585000 23271000 29188000 2 2 2 2 2 2 2 2 2 2 2 23083000 39693000 110510 32791000 32633000 27837000 29796000 21594000 21263000 21525000 29782000 21492000 37012000 1945800 33866000 31212000 28524000 30107000 22268000 22307000 21025000 28466000 2 2 1 2 2 2 2 2 2 2 2 4960100000 2995400000 1964800000 14945 510 13693 78164;78165;78166 94482;94483;94484;94485 94485 4 NVLTESAR Unmodified 888.46649 0.46649483 2 P0DPI2;A0A0B4J2D5;P0DPI2-2;A0A0B4J2D5-2 yes no 0 0 0 0 By MS/MS 3 0 1 1 32.265 32.02 2 0.008369 9859 20211116_3441_TMUAki_TMT10x_S_F3 86.744 45.556 279660 474510 0 452300 328500 292900 320350 315030 355810 295830 418900 260360 442690 20053 460610 314530 308720 326470 318610 362660 289710 402140 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 279660 474510 0 452300 328500 292900 320350 315030 355810 295830 418900 260360 442690 20053 460610 314530 308720 326470 318610 362660 289710 402140 1 1 0 1 1 1 1 1 1 1 1 22308000 0 22308000 14946 2 13694 78167 94486 94486 1 NVMVEPHRHEGVFICR Oxidation (M) 1994.9567 0.95671876 765 P22087 FBL rRNA 2'-O-methyltransferase fibrillarin yes yes 0 0 1 1 By MS/MS By matching 5.5 0.5 2 2 3 1 32.214 32.22 4;5 2.5958E-11 7445 20211116_3433_TMUAki_TMT10x_P_F5 138.91 116.71 556440 849610 13505 911450 1106800 1138200 693410 667510 678530 635360 743890 518200 793010 66427 928860 1051700 1135000 724510 701470 693260 621850 715580 3 3 3 3 3 3 3 3 3 3 3 556440 849610 13505 911450 1106800 1138200 693410 667510 678530 635360 743890 518200 793010 66427 928860 1051700 1135000 724510 701470 693260 621850 715580 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 236500000 235410000 1091300 14947 765 13695 78168;78169;78170;78171 94487;94488 94487 885 2 NVNIQNFHISWK Unmodified 1498.7681 0.76809658 644 P12814;P12814-2;P12814-3;P12814-4 ACTN1 Alpha-actinin-1 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 1 1 1 1 3 1 33.11 33.001 5 0.042967 10184 20211116_3441_TMUAki_TMT10x_S_F3 44.299 28.912 1166200 1615700 13318 2041900 2709800 2745600 1347400 1664700 1918000 1647700 1767400 1086000 1509200 130720 2063500 2564900 2729300 1455600 1746600 1921000 1610000 1709600 3 3 3 3 3 3 3 3 3 3 3 805350 1083400 11786 1383200 2356900 2306000 1048000 1094800 1289500 1115900 1189600 749950 1012000 99483 1403700 2227700 2265000 1139000 1174800 1297700 1088900 1150700 2 2 2 2 2 2 2 2 2 2 2 360890 532330 1532.9 658720 352960 439580 299400 570000 628570 531880 577790 336030 497190 31238 659800 337180 464270 316680 571810 623260 521030 558940 1 1 1 1 1 1 1 1 1 1 1 276510000 193120000 83384000 14948 644 13696 78172;78173;78174;78175 94489;94490;94491 94491 3 NVNNEVHFFENNNFNTIANK Unmodified 2378.104 0.10397116 2723 Q9BY44;Q9BY44-3 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 61.784 61.955 3 3.2326E-18 18339 20211116_3434_TMUAki_TMT10x_P_F6 145.88 135.07 21522000 36559000 1752600 38418000 27778000 36068000 27245000 30043000 29206000 28481000 32963000 20052000 34120000 3505300 39026000 26728000 36754000 27724000 30803000 29760000 27880000 31682000 5 5 5 5 5 5 5 5 5 5 5 8619200 13867000 656100 14418000 12904000 21114000 13726000 12674000 12122000 11074000 12136000 8030200 12941000 1386100 14770000 12433000 20906000 13830000 13264000 12403000 10881000 11707000 2 2 2 2 2 2 2 2 2 2 2 12903000 22692000 1096500 24000000 14874000 14955000 13519000 17368000 17084000 17407000 20827000 12022000 21179000 2119300 24256000 14294000 15847000 13894000 17538000 17357000 16999000 19976000 3 3 3 3 3 3 3 3 3 3 3 2501800000 1112900000 1388800000 14949 2723 13697 78176;78177;78178 94492;94493;94494;94495;94496 94492 5 NVNVFKFIIPQIVK Unmodified 1657.9919 0.9919485 531 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 1 By matching By MS/MS 7.33 0.471 2 1 1 2 78.94 78.963 3 2.7859E-06 27838 20211116_3446_TMUAki_TMT10x_S_F7 109.84 68.444 14567000 24723000 453850 21746000 40041000 12828000 19143000 15520000 10747000 12979000 18517000 13567000 23058000 1987400 22262000 37895000 13679000 20250000 15568000 11577000 12780000 17622000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14567000 24723000 453850 21746000 40041000 12828000 19143000 15520000 10747000 12979000 18517000 13567000 23058000 1987400 22262000 37895000 13679000 20250000 15568000 11577000 12780000 17622000 2 2 2 2 2 2 2 2 2 2 2 3552900000 530390000 3022600000 14950 531 13698 78179;78180;78181 94497;94498 94497 2 NVPAAREPEVLSTMAIIVNK Oxidation (M) 2167.1671 0.16708869 153 O14980 XPO1 Exportin-1 yes yes 0 0 1 1 By MS/MS 7 0 1 1 55.45 55.975 4 5.9285E-05 18267 20211116_3446_TMUAki_TMT10x_S_F7 76.061 51.267 3014100 4998500 0 4780400 2959100 2814100 2757300 4724400 3906500 4095600 4306700 2806300 4663300 236870 4862800 2831500 3031000 2842900 4688200 3938100 4025900 4142100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3014100 4998500 0 4780400 2959100 2814100 2757300 4724400 3906500 4095600 4306700 2806300 4663300 236870 4862800 2831500 3031000 2842900 4688200 3938100 4025900 4142100 1 1 0 1 1 1 1 1 1 1 1 257330000 0 257330000 14951 153 13699 78182 94499 94499 112 1 NVPHEDICEDSDIDGDYR Unmodified 2147.8702 0.87019098 106 O00629 KPNA4 Importin subunit alpha-3 yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 40.8 40.7 3 3.6042E-47 10323 20211116_3428_TMUAki_TMT10x_P_F1 205.18 171.24 100390 171600 2358.2 236600 82765 70233 68582 190380 190690 160500 186220 93492 160360 10274 234290 79145 84510 74087 186610 188490 157980 179780 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100390 171600 2358.2 236600 82765 70233 68582 190380 190690 160500 186220 93492 160360 10274 234290 79145 84510 74087 186610 188490 157980 179780 1 1 1 1 1 1 1 1 1 1 1 124910000 99611000 25300000 14952 106 13700 78183;78184;78185 94500;94501 94500 2 NVPNLHVMK Oxidation (M) 1066.5593 0.55934935 1056 P46783;Q9NQ39 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like yes no 0 0 1 0 By MS/MS By matching 8 0 2 1 1 36.201 36.604 3 0.013711 8628 20211116_3436_TMUAki_TMT10x_P_F8 58.433 38.821 168480 272930 1271.3 280740 434290 324300 232820 146260 141560 150850 228590 156880 254700 18876 286500 411430 323690 243870 157830 151090 147140 217820 1 1 1 1 1 1 1 1 1 1 1 168480 272930 1271.3 280740 434290 324300 232820 146260 141560 150850 228590 156880 254700 18876 286500 411430 323690 243870 157830 151090 147140 217820 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27656000 15274000 12383000 14953 1056 13701 78186;78187 94502 94502 1366 1 NVPNLHVMK Unmodified 1050.5644 0.56443473 1056 P46783;Q9NQ39 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like yes no 0 0 0 0 By MS/MS 8 0 1 1 40.692 40.909 3 0.059431 10417 20211116_3436_TMUAki_TMT10x_P_F8 47.938 28.325 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14954 1056 13701 78188 94503 94503 1 NVPVITGSK Unmodified 913.52328 0.52328142 924 P35232;P35232-2 PHB Prohibitin yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 41.837 42.168 2 0.00016661 10372 20211116_3447_TMUAki_TMT10x_S_F8 136.63 89.568 8920200 14938000 22508 14202000 14987000 14815000 11250000 10022000 10866000 8826800 12796000 8304900 13936000 739450 14549000 14270000 14947000 11594000 10396000 11139000 8670000 12284000 6 6 1 6 6 6 6 6 6 6 6 6441000 10593000 0 9968700 12327000 12751000 8407900 7744900 8323900 6574900 9503700 5996600 9882000 543090 10255000 11717000 12705000 8730800 8092100 8513700 6469600 9131300 4 4 0 4 4 4 4 4 4 4 4 2479200 4345100 22508 4232900 2659500 2064100 2841700 2277600 2541900 2251900 3292400 2308300 4054000 196360 4293700 2553900 2241300 2863600 2304100 2625700 2200400 3152800 2 2 1 2 2 2 2 2 2 2 2 348580000 157350000 191230000 14955 924 13702 78189;78190;78191;78192 94504;94505;94506;94507;94508;94509 94509 6 NVPYVFVR Unmodified 992.54435 0.54435122 1245 P55769 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 53.065 52.941 2 8.7997E-05 14823 20211116_3447_TMUAki_TMT10x_S_F8 167.82 139.3 36020000 60264000 200660 59218000 60129000 75109000 45211000 57030000 58240000 51417000 55412000 33539000 56229000 3363600 60724000 57282000 75130000 47043000 58729000 58579000 50447000 53542000 9 9 4 9 9 9 9 9 9 9 9 24792000 39937000 88704 39665000 47189000 63655000 35048000 38296000 39652000 34721000 37101000 23084000 37265000 2337500 40842000 44940000 62797000 36328000 40110000 40047000 34058000 35869000 5 5 2 5 5 5 5 5 5 5 5 11228000 20327000 111960 19554000 12940000 11454000 10164000 18734000 18588000 16695000 18311000 10455000 18964000 1026200 19881000 12342000 12332000 10715000 18619000 18531000 16389000 17673000 4 4 2 4 4 4 4 4 4 4 4 3566800000 2276700000 1290000000 14956 1245 13703 78193;78194;78195;78196;78197;78198 94510;94511;94512;94513;94514;94515;94516;94517;94518;94519 94519 10 NVQAEEMVEFSSGLK Oxidation (M) 1682.7822 0.78215124 805 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 3.33 1.37 1 3 3 1 4 7 5 54.714 54.504 2;3 1.191E-09 18930 20211116_3441_TMUAki_TMT10x_S_F3 125.73 116.04 41054000 67810000 271850 67438000 55401000 66981000 46300000 56921000 53758000 49874000 55915000 38224000 63272000 3316600 68817000 52883000 68038000 47671000 58170000 54440000 48999000 53872000 14 14 6 14 14 14 14 14 14 14 14 24975000 38501000 115910 41973000 35025000 47716000 30086000 28765000 26550000 25291000 31174000 23254000 35938000 1931700 42660000 33451000 47830000 30666000 30099000 27329000 24844000 29930000 8 8 3 8 8 8 8 8 8 8 8 16078000 29309000 155950 25465000 20375000 19265000 16214000 28156000 27208000 24582000 24740000 14970000 27334000 1384900 26157000 19432000 20208000 17005000 28071000 27110000 24156000 23943000 6 6 3 6 6 6 6 6 6 6 6 4966700000 2882700000 2084000000 14957 805 13704 78199;78200;78201;78202;78203;78204;78205;78206;78207;78208;78209;78210 94520;94521;94522;94523;94524;94525;94526;94527;94528;94529;94530;94531;94532;94533;94534;94535;94536 94532 953 17 NVQAEEMVEFSSGLK Unmodified 1666.7872 0.78723662 805 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4 0.632 1 3 1 1 4 68.079 67.895 2;3 9.1983E-69 20861 20211116_3444_TMUAki_TMT10x_S_F5 293.76 258.53 4907500 8349700 75486 7850500 6222800 5679000 5967400 4087200 3213700 3761500 5452100 4569900 7789300 495640 8011600 5964900 5883500 5981100 4226200 3469300 3687100 5190200 2 2 2 2 2 2 2 2 2 2 2 2430900 4072000 9302.2 4004300 2713800 3113100 2974000 1160600 982060 1274100 2456500 2263500 3799400 214170 4076500 2609200 3182500 2941400 1281900 1138600 1239600 2324000 1 1 1 1 1 1 1 1 1 1 1 2476500 4277600 66184 3846200 3509000 2565900 2993400 2926700 2231700 2487400 2995600 2306400 3989900 281460 3935100 3355600 2701100 3039700 2944300 2330800 2447400 2866100 1 1 1 1 1 1 1 1 1 1 1 1225200000 334530000 890640000 14958 805 13704 78211;78212;78213;78214;78215 94537;94538;94539;94540 94540 4 NVQGIIEILK Unmodified 1125.6758 0.67575932 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 4 4 4 4 75.567 75.58 2;3 1.647E-09 26340 20211116_3446_TMUAki_TMT10x_S_F7 185.14 126.46 66622000 110210000 1316900 103570000 68992000 78048000 71588000 59294000 53617000 55329000 76398000 62041000 102810000 6700500 105750000 66293000 80663000 71923000 61114000 56141000 54200000 72994000 7 7 5 7 7 7 7 7 7 7 7 33897000 53334000 594710 52550000 29008000 42592000 33411000 29265000 26513000 27644000 38657000 31565000 49763000 3296000 53516000 27961000 43704000 33447000 30379000 27705000 27065000 36915000 3 3 3 3 3 3 3 3 3 3 3 32725000 56878000 722180 51021000 39984000 35457000 38177000 30029000 27104000 27685000 37742000 30475000 53052000 3404500 52231000 38331000 36959000 38476000 30735000 28436000 27135000 36079000 4 4 2 4 4 4 4 4 4 4 4 8254500000 3971200000 4283300000 14959 1018 13705 78216;78217;78218;78219;78220;78221;78222;78223 94541;94542;94543;94544;94545;94546;94547;94548;94549 94545 9 NVQKNDVNVEFSEK Unmodified 1648.8057 0.80566387 3256 Q9Y2Z0;Q9Y2Z0-2 SUGT1 Suppressor of G2 allele of SKP1 homolog yes no 0 0 0 1 By MS/MS 6 0 1 1 43.12 43.285 3 2.6639E-09 11040 20211116_3445_TMUAki_TMT10x_S_F6 130.06 110.48 693070 1260900 0 941120 937130 1064400 864260 1553800 1622700 1346500 1322500 645310 1175300 60444 984530 896700 1087700 903940 1548900 1607000 1323600 1285100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 693070 1260900 0 941120 937130 1064400 864260 1553800 1622700 1346500 1322500 645310 1175300 60444 984530 896700 1087700 903940 1548900 1607000 1323600 1285100 1 1 0 1 1 1 1 1 1 1 1 51658000 0 51658000 14960 3256 13706 78224 94550 94550 1 NVQLLSQFVSPFTGCIYGR Unmodified 2185.099 0.099009123 3278 Q9Y3D5 MRPS18C 28S ribosomal protein S18c, mitochondrial yes yes 0 0 0 0 By MS/MS 6 0 1 1 80.153 80.153 3 0.010443 26191 20211116_3445_TMUAki_TMT10x_S_F6 44.047 25.908 1005400 1535100 0 1407300 1045400 897390 1332300 655600 695390 803280 974050 935820 1431900 43897 1437100 1006900 940220 1316700 683200 745200 778440 931010 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1005400 1535100 0 1407300 1045400 897390 1332300 655600 695390 803280 974050 935820 1431900 43897 1437100 1006900 940220 1316700 683200 745200 778440 931010 1 1 0 1 1 1 1 1 1 1 1 316150000 0 316150000 14961 3278 13707 78225 94551 94551 1 NVQLQENEIR Unmodified 1241.6364 0.6364137 957 P36873;P36873-2 PPP1CC Serine/threonine-protein phosphatase PP1-gamma catalytic subunit yes no 0 0 0 0 By MS/MS 2 0 1 1 35.58 35.679 2 4.3798E-06 8253 20211116_3440_TMUAki_TMT10x_S_F2 142.83 103.86 109250 172020 0 190400 98398 69673 93218 70011 80320 71261 125870 101720 160580 7689.8 191130 94139 78432 94426 71203 83892 69546 120010 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 109250 172020 0 190400 98398 69673 93218 70011 80320 71261 125870 101720 160580 7689.8 191130 94139 78432 94426 71203 83892 69546 120010 1 1 0 1 1 1 1 1 1 1 1 19650000 0 19650000 14962 957 13708 78226 94552 94552 1 NVQLSLLTER Unmodified 1171.6561 0.65608651 1130 P49959;P49959-2;P49959-3 MRE11A Double-strand break repair protein MRE11A yes no 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 55.99 56.065 2 1.9816E-05 16316 20211116_3445_TMUAki_TMT10x_S_F6 138.22 117.66 18083000 29208000 48552 30136000 23289000 25539000 20246000 21804000 20838000 20414000 25503000 16835000 27257000 1373200 30610000 22241000 26217000 20714000 22316000 21339000 19995000 24457000 3 3 2 3 3 3 3 3 3 3 3 7337600 10961000 0 11312000 12235000 15377000 10419000 7905800 8226200 7663900 9839200 6830100 10229000 432810 11576000 11670000 15246000 10595000 8407900 8521900 7494900 9441600 1 1 0 1 1 1 1 1 1 1 1 10745000 18247000 48552 18824000 11054000 10162000 9827200 13899000 12612000 12750000 15664000 10005000 17029000 940430 19034000 10571000 10970000 10119000 13908000 12817000 12500000 15016000 2 2 2 2 2 2 2 2 2 2 2 791880000 438310000 353570000 14963 1130 13709 78227;78228;78229 94553;94554;94555;94556 94555 4 NVQLTENEIR Unmodified 1214.6255 0.62551466 1333 P62136;P62136-2 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit yes no 0 0 0 0 By MS/MS 3 0.707 1 2 1 4 38.252 38.18 2 1.9114E-09 12656 20211116_3441_TMUAki_TMT10x_S_F3 182.71 108.78 1647000 2582400 572.28 3242300 1588700 1366900 1515900 1970600 2243000 1437800 2367600 1533200 2412100 97509 3233100 1519000 1521800 1564000 1957200 2254400 1426200 2280100 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1647000 2582400 572.28 3242300 1588700 1366900 1515900 1970600 2243000 1437800 2367600 1533200 2412100 97509 3233100 1519000 1521800 1564000 1957200 2254400 1426200 2280100 3 3 1 3 3 3 3 3 3 3 3 131020000 0 131020000 14964 1333 13710 78230;78231;78232;78233 94557;94558;94559 94558 3 NVQSVSIIDTELK Unmodified 1444.7773 0.77732386 1821 Q15645;Q15645-2 TRIP13 Pachytene checkpoint protein 2 homolog yes no 0 0 0 0 By MS/MS By matching 5 0 2 1 1 61.36 61.49 3 3.6713E-06 19323 20211116_3433_TMUAki_TMT10x_P_F5 103.76 82.808 3851900 6237500 10741 6149800 5676900 9601200 5513700 6844700 6629300 5239900 6169600 3586500 5819900 354920 6331600 5439800 9506200 5635800 7050300 6679000 5183700 5965800 1 1 1 1 1 1 1 1 1 1 1 3851900 6237500 10741 6149800 5676900 9601200 5513700 6844700 6629300 5239900 6169600 3586500 5819900 354920 6331600 5439800 9506200 5635800 7050300 6679000 5183700 5965800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1280700000 934230000 346450000 14965 1821 13711 78234;78235 94560 94560 1 NVSEELDRTPPEVSK Unmodified 1698.8424 0.84244331 1798 Q15393;Q15393-3 SF3B3 Splicing factor 3B subunit 3 yes no 0 0 0 1 By MS/MS By MS/MS 3.25 0.829 1 1 2 1 3 42.112 42.114 3 1.9439E-21 13914 20211116_3441_TMUAki_TMT10x_S_F3 179.78 156.64 5332800 8554700 163440 12631000 13406000 10973000 6978300 13028000 14192000 8327400 11476000 4966600 7997700 707520 12573000 12703000 11327000 7637800 13002000 14026000 8326700 11155000 4 4 4 4 4 4 4 4 4 4 4 1859300 2919400 60380 4628900 10558000 8534800 4336100 6756300 6810400 3677100 4600100 1731600 2730500 332260 4659900 9971100 8413800 4800200 6866900 6741700 3718100 4506000 1 1 1 1 1 1 1 1 1 1 1 3473500 5635200 103060 8001800 2847900 2437800 2642200 6271700 7382100 4650300 6875800 3234900 5267100 375260 7912800 2731800 2912800 2837600 6134600 7284600 4608500 6648600 3 3 3 3 3 3 3 3 3 3 3 927770000 560470000 367300000 14966 1798 13712 78236;78237;78238;78239 94561;94562;94563;94564 94562 4 NVSIGIVGK Unmodified 885.52837 0.5283668 806 P25786;P25786-2 PSMA1 Proteasome subunit alpha type-1 yes no 0 0 0 0 By MS/MS 8 0 1 1 50.799 50.701 2 3.272E-05 13911 20211116_3447_TMUAki_TMT10x_S_F8 118.71 84.459 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14967 806 13713 78240 94565 94565 1 NVSLGNVLAVAYATQR Unmodified 1674.9053 0.90531834 3013 Q9NY33;Q9NY33-4 DPP3 Dipeptidyl peptidase 3 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 3 3 3 3 76.434 76.379 2;3 6.6108E-21 25141 20211116_3431_TMUAki_TMT10x_P_F4 167.19 113.44 17221000 28235000 546670 25783000 16733000 30474000 19484000 18051000 16050000 17154000 20448000 16038000 26337000 1897600 26546000 16145000 30476000 19514000 18953000 16635000 16791000 19589000 6 6 4 6 6 6 6 6 6 6 6 15784000 25071000 247680 22316000 14243000 28163000 17634000 15966000 13868000 15421000 17872000 14698000 23383000 1485100 23048000 13755000 28055000 17593000 16832000 14415000 15083000 17117000 5 5 3 5 5 5 5 5 5 5 5 1436700 3164200 298990 3467600 2490300 2311300 1850700 2084900 2182100 1733400 2575900 1339900 2953700 412520 3498800 2389800 2420900 1921000 2120600 2219300 1707400 2472700 1 1 1 1 1 1 1 1 1 1 1 2369800000 1579700000 790100000 14968 3013 13714 78241;78242;78243;78244;78245;78246 94566;94567;94568;94569;94570;94571;94572 94569 7 NVSNLKPVPLIGPK Unmodified 1474.8871 0.88714908 2230 Q8NBX0 SCCPDH Saccharopine dehydrogenase-like oxidoreductase yes yes 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 55.267 55.425 3 3.4463E-07 17114 20211116_3442_TMUAki_TMT10x_S_F4 103.88 88.336 9377000 16599000 74947 16273000 18460000 24322000 15267000 14051000 14173000 13086000 13928000 8731000 15488000 910730 16744000 17621000 24050000 15619000 14776000 14458000 12820000 13443000 2 2 1 2 2 2 2 2 2 2 2 9377000 16599000 74947 16273000 18460000 24322000 15267000 14051000 14173000 13086000 13928000 8731000 15488000 910730 16744000 17621000 24050000 15619000 14776000 14458000 12820000 13443000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 622130000 622130000 0 14969 2230 13715 78247;78248 94573;94574;94575 94575 3 NVSSFPDDATSPLQENR Unmodified 1875.8599 0.85988429 1172 P52292 KPNA2 Importin subunit alpha-1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.85 0.948 1 4 4 4 6 7 50.295 50.205 2;3 8.959E-125 16066 20211116_3430_TMUAki_TMT10x_P_F3 390.41 349.01 25041000 44299000 247920 49601000 35978000 40432000 26601000 31768000 33659000 28824000 35617000 23317000 41356000 2185600 50090000 34269000 41560000 27692000 32649000 34003000 28272000 34298000 20 20 12 20 20 20 20 20 20 20 20 13663000 23266000 113390 27042000 25761000 31397000 18797000 16524000 18290000 15596000 19189000 12723000 21724000 1227400 27386000 24531000 31382000 19415000 17523000 18661000 15270000 18483000 10 10 6 10 10 10 10 10 10 10 10 11378000 21033000 134520 22559000 10217000 9035300 7804300 15244000 15369000 13228000 16428000 10594000 19631000 958220 22704000 9737900 10178000 8276600 15125000 15342000 13003000 15815000 10 10 6 10 10 10 10 10 10 10 10 6290700000 3966900000 2323700000 14970 1172 13716 78249;78250;78251;78252;78253;78254;78255;78256;78257;78258;78259;78260;78261 94576;94577;94578;94579;94580;94581;94582;94583;94584;94585;94586;94587;94588;94589;94590;94591;94592;94593;94594;94595;94596 94580 21 NVTEDLVPIEDIPDVHPDLQK Unmodified 2385.2064 0.20637055 2208 Q8N8A6 DDX51 ATP-dependent RNA helicase DDX51 yes yes 0 0 0 0 By MS/MS 2 0 1 1 74.481 74.337 3 0.029018 25471 20211116_3429_TMUAki_TMT10x_P_F2 39.425 24.811 2536000 4383200 0 4001900 2506000 4236100 2816400 1726400 1809700 2329000 2803900 2361200 4088600 202550 4113000 2410200 4244600 2809400 1900000 1920400 2249800 2674000 1 1 0 1 1 1 1 1 1 1 1 2536000 4383200 0 4001900 2506000 4236100 2816400 1726400 1809700 2329000 2803900 2361200 4088600 202550 4113000 2410200 4244600 2809400 1900000 1920400 2249800 2674000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 265330000 265330000 0 14971 2208 13717 78262 94597 94597 1 NVTELNEPLSNEER Unmodified 1642.7798 0.77984305 1331 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 2.15 0.948 4 4 4 1 6 7 43.58 43.479 2;3 3.9002E-154 11392 20211116_3428_TMUAki_TMT10x_P_F1 416.6 366.56 16256000 25242000 299900 35424000 33383000 28761000 19067000 25442000 29019000 19627000 27913000 15138000 23591000 1802400 35319000 31663000 29636000 20397000 25861000 29047000 19409000 26961000 17 17 11 17 17 17 17 17 17 17 17 7719400 10921000 185660 16017000 26750000 22622000 12751000 11356000 13462000 8379700 12412000 7188600 10210000 1042600 16079000 25306000 22386000 13687000 12026000 13627000 8306700 12006000 7 7 4 7 7 7 7 7 7 7 7 8536600 14320000 114240 19407000 6633200 6138200 6316600 14086000 15557000 11248000 15502000 7949000 13381000 759720 19241000 6357400 7250200 6709800 13835000 15420000 11102000 14955000 10 10 7 10 10 10 10 10 10 10 10 8677800000 6180800000 2497100000 14972 1331 13718 78263;78264;78265;78266;78267;78268;78269;78270;78271;78272;78273;78274;78275 94598;94599;94600;94601;94602;94603;94604;94605;94606;94607;94608;94609;94610;94611;94612;94613;94614 94598 17 NVTLCGHLHHGK Unmodified 1371.683 0.68298674 1757 Q15029;Q15029-2;Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 29.826 29.859 4 0.00026343 5914 20211116_3428_TMUAki_TMT10x_P_F1 82.85 71.159 289540 499340 10739 475680 358330 472500 360160 280110 296220 266830 374880 269670 465850 34977 486900 344280 477230 363250 294110 306940 261150 359200 2 2 2 2 2 2 2 2 2 2 2 154190 272530 2305.1 259420 218660 305620 198080 170980 184290 140570 219100 143590 254250 15835 266270 209280 305470 201570 179730 189320 138540 210280 1 1 1 1 1 1 1 1 1 1 1 135340 226820 8434.4 216260 139680 166880 162070 109130 111930 126260 155780 126080 211600 19142 220630 135000 171750 161670 114380 117620 122610 148920 1 1 1 1 1 1 1 1 1 1 1 11364000 6478900 4884800 14973 1757 13719 78276;78277 94615;94616 94615 2 NVTLGVPR Unmodified 854.4974 0.49740102 796 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 0 0 0 0 By MS/MS 8 0 1 1 38.737 39.08 2 0.097614 9059 20211116_3447_TMUAki_TMT10x_S_F8 57.859 28.71 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14974 796 13720 78278 94617 94617 1 NVTLPAVFK Unmodified 987.57532 0.57531699 953 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 0 0 By MS/MS By MS/MS 2.57 2.26 2 4 1 4 3 63.879 63.729 2;3 1.1556E-05 19984 20211116_3440_TMUAki_TMT10x_S_F2 127.4 99.385 42865000 74617000 228090 71832000 55262000 72600000 49964000 58020000 64926000 54613000 63332000 39911000 69615000 3600400 73489000 52846000 73585000 51421000 59625000 65340000 53479000 61143000 8 8 3 8 8 8 8 8 8 8 8 20628000 35841000 122650 35098000 36716000 50307000 29773000 29102000 31693000 26900000 30559000 19206000 33441000 1848100 36086000 35025000 49835000 30623000 30594000 32118000 26362000 29514000 4 4 1 4 4 4 4 4 4 4 4 22237000 38776000 105440 36734000 18546000 22293000 20191000 28918000 33233000 27714000 32773000 20704000 36175000 1752200 37403000 17821000 23750000 20798000 29031000 33222000 27116000 31629000 4 4 2 4 4 4 4 4 4 4 4 4105400000 2614700000 1490600000 14975 953 13721 78279;78280;78281;78282;78283;78284;78285 94618;94619;94620;94621;94622;94623;94624;94625;94626 94626 9 NVTQIEPFCLETDRR Unmodified 1876.9101 0.91014572 3175 Q9ULW0;Q9ULW0-2 TPX2 Targeting protein for Xklp2 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 52.586 52.743 3 4.0143E-14 15767 20211116_3433_TMUAki_TMT10x_P_F5 146 105.89 21599000 36616000 276190 39643000 30658000 41193000 24586000 30822000 30972000 29146000 30104000 20112000 34178000 2060200 40251000 29253000 41636000 25454000 31810000 31198000 28534000 29067000 8 8 6 8 8 8 8 8 8 8 8 13797000 23047000 210410 25171000 22647000 33621000 18446000 19542000 19548000 18911000 19250000 12848000 21513000 1463900 25655000 21622000 33413000 18964000 20561000 19828000 18496000 18579000 5 5 5 5 5 5 5 5 5 5 5 7801600 13569000 65781 14472000 8011300 7571900 6140300 11279000 11424000 10234000 10854000 7263600 12664000 596270 14597000 7631100 8222700 6489800 11250000 11370000 10039000 10488000 3 3 1 3 3 3 3 3 3 3 3 1662100000 825890000 836170000 14976 3175 13722 78286;78287;78288;78289 94627;94628;94629;94630;94631;94632;94633;94634 94631 8 NVTVQPDDPISFMQLTAK Oxidation (M) 2018.9983 0.99829203 1206 P53618 COPB1 Coatomer subunit beta yes yes 0 0 1 0 By MS/MS 6 0 1 1 69.572 69.488 3 0.00066913 21872 20211116_3445_TMUAki_TMT10x_S_F6 62.589 50.229 3285600 6276000 95389 5689000 4995200 4968600 4204100 6397900 5542000 5309400 5459600 3060000 5854000 385240 5834400 4775500 5138200 4347100 6400200 5576600 5230300 5269200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3285600 6276000 95389 5689000 4995200 4968600 4204100 6397900 5542000 5309400 5459600 3060000 5854000 385240 5834400 4775500 5138200 4347100 6400200 5576600 5230300 5269200 2 2 2 2 2 2 2 2 2 2 2 541660000 0 541660000 14977 1206 13723 78290 94635;94636 94636 1618 2 NVVHELR Unmodified 865.477 0.47699993 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 29.021 28.866 3 0.008419 8487 20211116_3441_TMUAki_TMT10x_S_F3 85.212 35.853 226010 367970 3716.2 306020 257500 317990 407680 371720 293600 231060 268150 210460 343120 22642 316740 250900 324420 402140 371010 302770 231460 259460 2 2 2 2 2 2 2 2 2 2 2 145100 211270 1446.6 184260 160790 234910 267370 256480 183490 145770 168590 135110 197040 13598 190640 156940 236670 263030 256370 189810 146930 163100 1 1 1 1 1 1 1 1 1 1 1 80907 156700 2269.7 121750 96711 83083 140310 115240 110100 85280 99560 75349 146090 9044.3 126100 93965 87748 139110 114650 112960 84524 96368 1 1 1 1 1 1 1 1 1 1 1 20033000 11082000 8950900 14978 1695 13724 78291;78292;78293 94637;94638 94638 2 NVVHQLSVTLEDLYNGATR Unmodified 2128.0913 0.091281208 889 P31689;P31689-2 DNAJA1 DnaJ homolog subfamily A member 1 yes no 0 0 0 0 By MS/MS 1 0 1 1 78.641 78.641 3 2.7691E-24 25728 20211116_3428_TMUAki_TMT10x_P_F1 174.19 155.36 1612300 2936400 6244.5 2371800 1612600 3256300 1805000 1723800 1911300 1818000 2072000 1501300 2737900 139500 2472800 1551500 3228300 1824100 1832800 1945500 1771700 1993800 1 1 1 1 1 1 1 1 1 1 1 1612300 2936400 6244.5 2371800 1612600 3256300 1805000 1723800 1911300 1818000 2072000 1501300 2737900 139500 2472800 1551500 3228300 1824100 1832800 1945500 1771700 1993800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 865570000 865570000 0 14979 889 13725 78294 94639 94639 1 NVVHQLSVTLEDLYNGATRK Unmodified 2256.1862 0.18624423 889 P31689;P31689-2 DNAJA1 DnaJ homolog subfamily A member 1 yes no 0 0 0 1 By MS/MS 3 0.816 1 1 1 3 77.557 77.513 4 3.9674E-07 27281 20211116_3430_TMUAki_TMT10x_P_F3 97.32 86.981 4018400 5999500 129530 5446500 3194400 6575900 4116700 3945200 3419000 3725800 4372400 3742500 5596100 442330 5612300 3094000 6570300 4106000 4137400 3542600 3647800 4188300 1 1 1 1 1 1 1 1 1 1 1 4018400 5999500 129530 5446500 3194400 6575900 4116700 3945200 3419000 3725800 4372400 3742500 5596100 442330 5612300 3094000 6570300 4106000 4137400 3542600 3647800 4188300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2244800000 2244800000 0 14980 889 13726 78295;78296;78297 94640 94640 1 NVVLQTLEGHLR Unmodified 1377.7728 0.7728476 1700 Q14254 FLOT2 Flotillin-2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 3.09 1 1 1 1 2 58.875 58.867 3 6.4552E-10 17188 20211116_3447_TMUAki_TMT10x_S_F8 158.25 140.51 1168700 1914500 74528 1862300 1129400 1302900 1240100 1490400 1436200 1501500 1571700 1088700 1786200 165800 1895200 1090200 1366100 1258200 1506200 1457300 1466000 1512000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1168700 1914500 74528 1862300 1129400 1302900 1240100 1490400 1436200 1501500 1571700 1088700 1786200 165800 1895200 1090200 1366100 1258200 1506200 1457300 1466000 1512000 1 1 1 1 1 1 1 1 1 1 1 506540000 0 506540000 14981 1700 13727 78298;78299;78300 94641;94642;94643 94643 3 NVVTIFSAPNYCYR Unmodified 1702.8137 0.81372614 1363 P67775;P62714;P67775-2 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 4 4 4 4 66.672 66.35 2;3 2.0276E-60 23814 20211116_3441_TMUAki_TMT10x_S_F3 304.69 276.49 27634000 47253000 377870 44483000 33231000 36828000 29556000 24216000 20171000 24370000 34036000 25732000 44082000 2594600 45461000 31786000 37706000 29881000 25262000 21423000 23795000 32404000 9 9 6 9 9 9 9 9 9 9 9 11749000 18585000 160000 18359000 11426000 20643000 12513000 10116000 8268900 9908700 13630000 10940000 17341000 1029200 18779000 10987000 20652000 12504000 10810000 8788100 9685900 12983000 4 4 2 4 4 4 4 4 4 4 4 15886000 28668000 217870 26124000 21805000 16185000 17043000 14100000 11902000 14462000 20405000 14793000 26741000 1565400 26682000 20799000 17054000 17377000 14452000 12635000 14109000 19421000 5 5 4 5 5 5 5 5 5 5 5 6388100000 3114900000 3273200000 14982 1363 13728 78301;78302;78303;78304;78305;78306;78307;78308 94644;94645;94646;94647;94648;94649;94650;94651;94652 94651 9 NVVTVDELR Unmodified 1043.5611 0.56112349 2719 Q9BXW7;Q9BXW7-2 CECR5 Cat eye syndrome critical region protein 5 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 43.155 43.134 2 0.00088857 13119 20211116_3430_TMUAki_TMT10x_P_F3 109.02 42.474 2034400 3093200 0 3729200 2794200 2391600 1901800 1623700 2032700 1492800 2566700 1894200 2888700 169320 3739500 2656100 2501700 1979800 1685700 2081100 1463300 2459500 2 2 0 2 2 2 2 2 2 2 2 727480 1000700 0 1279600 1561400 1310700 820920 594660 670920 546510 908450 677330 934800 69558 1286200 1478400 1317300 866770 639300 697540 535740 869000 1 1 0 1 1 1 1 1 1 1 1 1306900 2092500 0 2449600 1232800 1080900 1080900 1029100 1361800 946260 1658300 1216800 1953900 99759 2453300 1177800 1184400 1113000 1046400 1383600 927580 1590500 1 1 0 1 1 1 1 1 1 1 1 131190000 49573000 81616000 14983 2719 13729 78309;78310;78311 94653;94654 94653 2 NVVVFDK Unmodified 819.44905 0.44905385 3182 Q9UMS4 PRPF19 Pre-mRNA-processing factor 19 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.894 2 1 2 2 3 49.283 49.431 2 0.011846 13600 20211116_3445_TMUAki_TMT10x_S_F6 94.302 47.235 13957000 22856000 175320 24949000 24099000 21386000 17096000 16747000 17969000 16304000 20056000 12996000 21335000 1462500 25251000 22942000 21902000 17735000 17248000 18316000 15942000 19283000 4 4 4 4 4 4 4 4 4 4 4 7563100 12053000 129640 12954000 17272000 15989000 10276000 8909000 9532700 8801500 10352000 7043000 11250000 883830 13197000 16393000 15942000 10766000 9412100 9759400 8600400 9960500 2 2 2 2 2 2 2 2 2 2 2 6393600 10803000 45677 11994000 6827200 5397000 6820100 7838300 8436100 7502800 9704400 5953400 10085000 578710 12054000 6548900 5959900 6968400 7836200 8556600 7341400 9322200 2 2 2 2 2 2 2 2 2 2 2 667920000 456730000 211190000 14984 3182 13730 78312;78313;78314;78315;78316 94655;94656;94657;94658;94659 94659 5 NVVVVDGVR Unmodified 955.54508 0.5450795 1237 P55084;P55084-2 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 0 0 0 0 By MS/MS By MS/MS 3.57 0.728 4 2 1 4 3 34.386 34.384 2 0.00023417 9849 20211116_3431_TMUAki_TMT10x_P_F4 133.13 89.017 6059200 9501400 38325 9456100 8614200 8462300 6297100 6441500 6545200 5718400 7960700 5641900 8865700 548430 9635100 8202600 8636700 6516200 6629600 6697900 5614700 7635600 8 8 4 8 8 8 8 8 8 8 8 3805800 5932900 5572.6 5686100 6266800 6538100 4025600 3910800 4095400 3488400 4910400 3543500 5535100 329770 5830900 5951800 6549000 4202600 4096200 4192200 3424300 4711600 5 5 1 5 5 5 5 5 5 5 5 2253500 3568500 32752 3770000 2347400 1924100 2271500 2530700 2449700 2230100 3050300 2098400 3330600 218670 3804200 2250900 2087700 2313600 2533400 2505700 2190400 2924000 3 3 3 3 3 3 3 3 3 3 3 537290000 219360000 317930000 14985 1237 13731 78317;78318;78319;78320;78321;78322;78323 94660;94661;94662;94663;94664;94665;94666;94667 94664 8 NVVYPLYR Unmodified 1022.5549 0.5549159 1850 Q16540 MRPL23 39S ribosomal protein L23, mitochondrial yes yes 0 0 0 0 By MS/MS 1 0 1 1 47.74 47.499 2 0.026509 15131 20211116_3439_TMUAki_TMT10x_S_F1 65.676 41.473 2972700 5721800 213880 5623700 2800900 2688300 2555100 3618800 3456200 2872300 3823200 2769400 5338700 443380 5700200 2692400 2940600 2632500 3610100 3489700 2836000 3676700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2972700 5721800 213880 5623700 2800900 2688300 2555100 3618800 3456200 2872300 3823200 2769400 5338700 443380 5700200 2692400 2940600 2632500 3610100 3489700 2836000 3676700 1 1 1 1 1 1 1 1 1 1 1 50454000 0 50454000 14986 1850 13732 78324 94668 94668 1 NVYDLTSIPVR Unmodified 1275.6823 0.68230126 3196 Q9UNN5 FAF1 FAS-associated factor 1 yes yes 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 59.476 59.867 2 5.3802E-05 19336 20211116_3435_TMUAki_TMT10x_P_F7 101.38 77.159 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14987 3196 13733 78325;78326 94669;94670 94670 2 NVYKFELDTSER Unmodified 1499.7256 0.72562264 495 P04844;P04844-2 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 0 0 0 1 By MS/MS By MS/MS 5.29 1.03 2 2 2 1 3 4 48.548 48.701 3 3.0205E-09 14050 20211116_3433_TMUAki_TMT10x_P_F5 153.18 127.59 57804000 91008000 147810 99331000 71021000 73362000 62489000 54455000 54669000 51952000 70901000 53819000 84951000 4735800 100360000 67868000 75913000 63590000 56246000 56535000 50842000 67893000 7 7 3 7 7 7 7 7 7 7 7 25770000 40376000 0 44347000 36397000 43768000 27441000 24069000 23537000 21681000 32080000 23993000 37690000 2104000 44952000 34663000 44181000 28182000 25395000 24419000 21273000 30682000 3 3 0 3 3 3 3 3 3 3 3 32034000 50632000 147810 54984000 34624000 29593000 35049000 30386000 31132000 30271000 38822000 29826000 47262000 2631800 55405000 33205000 31732000 35408000 30851000 32116000 29569000 37212000 4 4 3 4 4 4 4 4 4 4 4 6035200000 3038100000 2997000000 14988 495 13734 78327;78328;78329;78330;78331;78332;78333 94671;94672;94673;94674;94675;94676;94677;94678 94672 8 NWFGLPGR Unmodified 945.48209 0.48208531 56 CON__Q3ZBS7 yes yes 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 61.833 61.632 2 0.00046972 21913 20211116_3441_TMUAki_TMT10x_S_F3 157.86 124.51 + 39693000 85805000 242800 62304000 63748000 70577000 58574000 34101000 33330000 45137000 58969000 36955000 79977000 3306200 65344000 60973000 70569000 58904000 36843000 35922000 43629000 56092000 6 6 3 6 6 6 6 6 6 6 6 20585000 41648000 98204 31727000 40154000 44301000 38343000 17225000 15479000 22026000 29600000 19164000 38825000 1650900 33255000 38434000 43747000 38280000 19024000 17249000 21314000 28117000 3 3 1 3 3 3 3 3 3 3 3 19108000 44157000 144600 30577000 23594000 26276000 20231000 16876000 17852000 23111000 29369000 17792000 41152000 1655300 32088000 22539000 26822000 20624000 17819000 18674000 22315000 27974000 3 3 2 3 3 3 3 3 3 3 3 3231600000 1988700000 1242800000 14989 56 13735 78334;78335;78336;78337;78338 94679;94680;94681;94682;94683;94684 94683 6 NWLGFTLLTSGYFGTHPPK Unmodified 2135.084 0.084010986 3261 Q9Y334;Q9Y334-2 VWA7 von Willebrand factor A domain-containing protein 7 yes no 0 0 0 0 By MS/MS 2 0 1 1 55.295 55.089 3 0.10249 16389 20211116_3440_TMUAki_TMT10x_S_F2 27.324 0.59535 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14990 3261 13736 78339 94685 94685 1 NYAAALETFTEGQK Unmodified 1541.7362 0.73618733 3256 Q9Y2Z0;Q9Y2Z0-2 SUGT1 Suppressor of G2 allele of SKP1 homolog yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 69.039 69.061 3 1.2479E-06 21260 20211116_3434_TMUAki_TMT10x_P_F6 93.823 78.85 2656700 4869700 56433 5391600 3194000 3035500 3243300 3234900 3220600 3238000 3826800 2474100 4545900 280380 5428200 3067200 3242200 3286500 3279000 3298900 3162300 3672800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2656700 4869700 56433 5391600 3194000 3035500 3243300 3234900 3220600 3238000 3826800 2474100 4545900 280380 5428200 3067200 3242200 3286500 3279000 3298900 3162300 3672800 1 1 1 1 1 1 1 1 1 1 1 261410000 0 261410000 14991 3256 13737 78340;78341;78342;78343 94686;94687;94688;94689 94687 4 NYAAALETFTEGQKLDIETGFHR Unmodified 2610.2714 0.27143042 3256 Q9Y2Z0 SUGT1 Suppressor of G2 allele of SKP1 homolog yes yes 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 75.23 75.302 4 4.3154E-16 26266 20211116_3446_TMUAki_TMT10x_S_F7 139.26 129.67 29970000 51887000 476820 43326000 30629000 50679000 35243000 29598000 28959000 30974000 37296000 27908000 48384000 2857500 44914000 29509000 50701000 35312000 31199000 30032000 30194000 35720000 6 6 4 6 6 6 6 6 6 6 6 22921000 39382000 441710 33365000 21457000 41743000 25997000 21531000 21459000 23390000 28298000 21344000 36725000 2225600 34588000 20710000 41554000 25992000 22967000 22272000 22767000 27086000 4 4 3 4 4 4 4 4 4 4 4 7048600 12505000 35109 9960700 9172800 8936200 9246100 8067600 7499900 7583800 8998400 6563100 11659000 631920 10326000 8798300 9147300 9320800 8231900 7759500 7426700 8634100 2 2 1 2 2 2 2 2 2 2 2 2075200000 1064400000 1010800000 14992 3256 13738 78344;78345;78346 94690;94691;94692;94693;94694;94695 94695 6 NYGFVHIEDK Unmodified 1220.5826 0.58258722 2707 Q9BWF3;Q9BWF3-3;Q9BWF3-4;Q9BWF3-2;Q9BQ04 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 0 0 0 0 By MS/MS By MS/MS 4.17 1.07 2 2 1 1 3 3 46.142 46.262 3 0.00053326 13166 20211116_3433_TMUAki_TMT10x_P_F5 89.805 56.858 6526300 10062000 71514 12953000 13433000 12068000 7509900 7454400 8403700 6837700 8896200 6077200 9399600 700580 12996000 12735000 12245000 7954900 7793500 8527600 6703500 8566600 3 3 2 3 3 3 3 3 3 3 3 5044000 7579600 36924 9664300 12142000 10722000 6142100 5551300 6254000 5131500 6647700 4696700 7080300 548130 9727800 11493000 10741000 6547300 5892500 6371400 5029000 6400600 2 2 1 2 2 2 2 2 2 2 2 1482300 2482300 34590 3288200 1291000 1345900 1367800 1903200 2149700 1706300 2248600 1380400 2319300 152450 3268600 1241900 1503500 1407600 1901000 2156200 1674500 2166000 1 1 1 1 1 1 1 1 1 1 1 1308300000 935580000 372680000 14993 2707 13739 78347;78348;78349;78350;78351;78352 94696;94697;94698;94699;94700 94697 5 NYGILADATEQVGQHK Unmodified 1742.8588 0.85876208 2744 Q9BZZ5-2;Q9BZZ5;Q9BZZ5-3 API5 Apoptosis inhibitor 5 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.957 1 2 2 1 3 3 53.014 53.238 3 1.0858E-42 14819 20211116_3444_TMUAki_TMT10x_S_F5 218.78 200.18 40156000 70826000 845470 78258000 66748000 70247000 48313000 54206000 56860000 51515000 60656000 37395000 66116000 4465500 79191000 63588000 71696000 50235000 55842000 57606000 50424000 58395000 9 9 7 9 9 9 9 9 9 9 9 20291000 35672000 593210 41057000 48286000 53012000 32737000 28757000 31565000 28355000 32298000 18898000 33306000 2627200 41684000 45944000 52723000 33983000 30451000 32189000 27709000 31134000 4 4 4 4 4 4 4 4 4 4 4 19865000 35153000 252260 37201000 18463000 17235000 15576000 25448000 25295000 23161000 28358000 18498000 32809000 1838300 37508000 17644000 18974000 16251000 25391000 25417000 22714000 27261000 5 5 3 5 5 5 5 5 5 5 5 6675400000 3732100000 2943300000 14994 2744 13740 78353;78354;78355;78356;78357;78358 94701;94702;94703;94704;94705;94706;94707;94708;94709 94706 9 NYGSYSTQASAAAATAELLK Unmodified 2015.98 0.97999942 138 O14828;O14828-2 SCAMP3 Secretory carrier-associated membrane protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 7.14 0.639 1 4 2 3 4 68.231 68.465 2;3 1.5826E-41 23419 20211116_3446_TMUAki_TMT10x_S_F7 213.02 191.76 20263000 36538000 115890 34705000 25087000 30856000 25304000 21997000 22239000 22011000 27795000 18867000 34087000 1726600 35477000 24058000 31473000 25561000 22813000 22955000 21496000 26641000 9 9 4 9 9 9 9 9 9 9 9 8138000 14823000 0 13966000 9170700 16530000 10767000 8954800 9416500 9281200 11072000 7576500 13828000 599490 14347000 8827600 16512000 10796000 9496700 9697500 9051100 10629000 3 3 0 3 3 3 3 3 3 3 3 12125000 21715000 115890 20739000 15916000 14326000 14537000 13043000 12822000 12729000 16723000 11290000 20259000 1127100 21130000 15231000 14961000 14765000 13316000 13258000 12445000 16012000 6 6 4 6 6 6 6 6 6 6 6 6109900000 3020900000 3089000000 14995 138 13741 78359;78360;78361;78362;78363;78364;78365 94710;94711;94712;94713;94714;94715;94716;94717;94718 94715 9 NYHIFYR Unmodified 1011.4926 0.49265 3180 Q9UM54-6;Q9UM54;Q9UM54-5;Q9UM54-4;Q9UM54-2;Q9UM54-1 MYO6 Unconventional myosin-VI yes no 0 0 0 0 By MS/MS By MS/MS 3.8 3.06 2 1 1 1 2 3 37.274 37.387 3 0.013315 11115 20211116_3439_TMUAki_TMT10x_S_F1 76.847 55.383 900740 1447700 34838 1592400 1528800 1763600 1202900 1292500 1350000 1191100 1310000 838930 1351400 115100 1616900 1459700 1775500 1241800 1334900 1365600 1167400 1265000 3 3 2 3 3 3 3 3 3 3 3 518120 864670 34838 931130 1174600 1380000 813850 772090 820870 728190 759300 482680 807070 84617 951930 1119300 1364500 844600 814370 832610 713000 734380 2 2 2 2 2 2 2 2 2 2 2 382620 583020 0 661320 354210 383550 389070 520440 529140 462860 550730 356250 544320 30486 664970 340460 410950 397160 520510 532940 454430 530600 1 1 0 1 1 1 1 1 1 1 1 97130000 65207000 31923000 14996 3180 13742 78366;78367;78368;78369;78370 94719;94720;94721;94722 94721 4 NYHPIVVPGLGR Unmodified 1320.7303 0.73025451 1564 Q12789;Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 45.768 45.607 3 0.00057452 12452 20211116_3440_TMUAki_TMT10x_S_F2 79.82 68.991 2835700 4479500 36891 4900600 4062800 3798800 3034100 3991800 3854200 3472700 4317100 2640600 4181400 286670 4953200 3872000 3942300 3156800 4033400 3901500 3413000 4150200 3 3 3 3 3 3 3 3 3 3 3 1023900 1419800 275.37 1613900 2149000 2049100 1210000 1187400 1182000 1059700 1480600 953330 1325500 100900 1639200 2036900 2041300 1275600 1247000 1214300 1040200 1419100 1 1 1 1 1 1 1 1 1 1 1 1811800 3059700 36615 3286800 1913900 1749600 1824100 2804400 2672200 2413000 2836400 1687200 2855900 185760 3314000 1835100 1900900 1881200 2786400 2687200 2372800 2731100 2 2 2 2 2 2 2 2 2 2 2 346400000 228780000 117620000 14997 1564 13743 78371;78372 94723;94724;94725 94725 3 NYIEMKPHPWFFGK Oxidation (M) 1808.8708 0.87084709 1388 P62993 GRB2 Growth factor receptor-bound protein 2 yes yes 0 0 1 1 By MS/MS By matching 3 0 2 1 1 58.92 58.591 4 0.0017324 19594 20211116_3430_TMUAki_TMT10x_P_F3 68.513 47.56 5574800 9340000 156660 9064000 8006000 11031000 8156100 4366300 4761000 5830300 7755900 5191800 8714200 642240 9295700 7689800 10966000 8160100 4819500 5098300 5633900 7389200 1 1 1 1 1 1 1 1 1 1 1 5574800 9340000 156660 9064000 8006000 11031000 8156100 4366300 4761000 5830300 7755900 5191800 8714200 642240 9295700 7689800 10966000 8160100 4819500 5098300 5633900 7389200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1586800000 968560000 618240000 14998 1388 13744 78373;78374 94726 94726 1865 1 NYILDQTNVYGSAQR Unmodified 1740.8431 0.84311201 2675 Q9BUJ2;Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2-3 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 4 2 4 2 51.939 52.061 2;3 1.0732E-48 14283 20211116_3434_TMUAki_TMT10x_P_F6 247.67 220.36 12525000 20529000 221650 23056000 21767000 22315000 14819000 17060000 16573000 14506000 19143000 11664000 19165000 1354700 23332000 20709000 22661000 15449000 17534000 16875000 14273000 18387000 4 4 3 4 4 4 4 4 4 4 4 6965900 11325000 188800 12932000 16750000 17394000 9994200 9422600 9221400 7751400 10728000 6487300 10573000 890510 13146000 15902000 17265000 10467000 9932500 9468500 7639200 10303000 2 2 2 2 2 2 2 2 2 2 2 5559300 9204100 32846 10124000 5017200 4921200 4824600 7637500 7351900 6755100 8414900 5176300 8591900 464220 10186000 4806600 5395400 4982100 7601700 7406400 6633700 8084700 2 2 1 2 2 2 2 2 2 2 2 836980000 465020000 371970000 14999 2675 13745 78375;78376;78377;78378;78379;78380 94727;94728;94729;94730;94731;94732;94733 94729 7 NYIVEDGDIIFFK Unmodified 1571.7872 0.78716026 2947 Q9NTK5;Q9NTK5-2 OLA1 Obg-like ATPase 1 yes no 0 0 0 0 By MS/MS 4 0 2 2 77.922 77.939 2 1.0245E-08 25823 20211116_3431_TMUAki_TMT10x_P_F4 122.39 81.677 9483600 15018000 0 13746000 8240000 15286000 8972400 8027300 7790000 8726000 10324000 8829000 14008000 620540 14136000 7909700 15314000 9026200 8548900 8066600 8493500 9880700 1 1 0 1 1 1 1 1 1 1 1 9483600 15018000 0 13746000 8240000 15286000 8972400 8027300 7790000 8726000 10324000 8829000 14008000 620540 14136000 7909700 15314000 9026200 8548900 8066600 8493500 9880700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 392930000 392930000 0 15000 2947 13746 78381;78382 94734;94735 94734 2 NYKSEEEFIHINNK Unmodified 1763.8479 0.84786304 1760 Q15046;Q15046-2 KARS Lysine--tRNA ligase yes no 0 0 0 1 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 43.913 44.168 4 3.1271E-09 11456 20211116_3445_TMUAki_TMT10x_S_F6 130.24 110.91 28874000 49693000 297330 58163000 45614000 46681000 28399000 52752000 53064000 42354000 49241000 26886000 46400000 2791600 58566000 43314000 48400000 30470000 53017000 52769000 41794000 47619000 10 10 8 10 10 10 10 10 10 10 10 10571000 17826000 82608 20218000 31433000 33439000 16963000 19160000 20286000 15333000 17457000 9842900 16643000 1245600 20655000 29781000 32929000 18066000 20086000 20392000 15133000 16927000 3 3 3 3 3 3 3 3 3 3 3 18304000 31867000 214720 37945000 14180000 13242000 11436000 33592000 32778000 27021000 31784000 17043000 29758000 1546000 37911000 13533000 15471000 12404000 32930000 32376000 26660000 30692000 7 7 5 7 7 7 7 7 7 7 7 3776200000 2394400000 1381800000 15001 1760 13747 78383;78384;78385;78386;78387;78388 94736;94737;94738;94739;94740;94741;94742;94743;94744;94745 94743 10 NYLHYSLYDQAEK Unmodified 1642.7627 0.76273643 203 O43242;O43242-2 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 49.301 49.588 3 0.00024831 13964 20211116_3436_TMUAki_TMT10x_P_F8 80.96 62.127 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15002 203 13748 78389;78390 94746;94747 94746 2 NYLLQCTR Unmodified 1066.523 0.52296385 2541 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 39.181 39.628 2 0.0099152 10025 20211116_3436_TMUAki_TMT10x_P_F8 82.563 64.5 876460 1521100 2734.2 1636000 2191700 1876500 1186400 1513800 1498000 1153800 1520500 815990 1419800 81500 1664500 2075600 1888600 1265600 1546600 1511100 1141700 1466100 3 3 1 3 3 3 3 3 3 3 3 511400 890110 0 945120 1874900 1601100 884130 927500 932550 728370 905660 476080 830780 50975 970100 1772200 1575500 950110 971050 945630 719570 874490 1 1 0 1 1 1 1 1 1 1 1 365060 631030 2734.2 690860 316760 275340 302270 586270 565420 425470 614850 339920 589040 30525 694350 303420 313120 315510 575580 565450 422160 591600 2 2 1 2 2 2 2 2 2 2 2 48837000 30676000 18161000 15003 2541 13749 78391;78392 94748;94749;94750 94748 3 NYLPAINGIVFLVDCADHSR Unmodified 2273.1263 0.12628651 2919 Q9NR31;Q9NR31-2 SAR1A GTP-binding protein SAR1a yes no 0 0 0 0 By MS/MS By MS/MS 6 2.92 1 1 2 3 1 80.142 80.148 3 2.447E-18 25841 20211116_3447_TMUAki_TMT10x_S_F8 149.42 133.48 7810600 11075000 109060 11620000 7062500 10612000 7799300 5901200 5080800 5875900 8112400 7273200 10336000 475670 11800000 6796900 10767000 7788500 6236900 5395400 5739700 7731900 4 4 2 4 4 4 4 4 4 4 4 6258800 8780900 109060 9425900 5711800 9004700 6004300 4594500 4097700 4501600 6424000 5828400 8195900 475670 9564100 5490700 9100300 6016100 4891100 4334700 4400300 6125000 3 3 2 3 3 3 3 3 3 3 3 1551700 2294400 0 2193700 1350600 1607000 1794900 1306800 983060 1374300 1688300 1444800 2140500 0 2236300 1306200 1666500 1772300 1345800 1060700 1339500 1606800 1 1 0 1 1 1 1 1 1 1 1 3228000000 2180000000 1048000000 15004 2919 13750 78393;78394;78395;78396 94751;94752;94753;94754 94754 4 NYLSCDVEVR Unmodified 1253.571 0.57103625 1028 P43304;P43304-2 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By matching 3 0 2 1 1 43.345 43.205 2 0.00070206 13161 20211116_3430_TMUAki_TMT10x_P_F3 100.88 79.578 463370 771500 8290.2 927730 1241200 1179800 645800 638150 635170 597040 719640 431510 720480 57037 939170 1175600 1174200 685870 674930 649630 584800 691590 1 1 1 1 1 1 1 1 1 1 1 463370 771500 8290.2 927730 1241200 1179800 645800 638150 635170 597040 719640 431510 720480 57037 939170 1175600 1174200 685870 674930 649630 584800 691590 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 51727000 29125000 22602000 15005 1028 13751 78397;78398 94755 94755 1 NYMSNPSYNYEIVNR Oxidation (M) 1878.8207 0.82066201 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 1 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 44.485 44.63 3 3.4383E-10 12516 20211116_3433_TMUAki_TMT10x_P_F5 136.6 125.13 2459200 4032100 82870 4906400 5664000 5753700 3274500 4212100 4553900 3541600 4207700 2290400 3765700 326000 4956300 5375900 5774600 3486000 4340300 4564500 3486500 4069700 3 3 3 3 3 3 3 3 3 3 3 1714000 2897400 76204 3521600 4952100 5171900 2709000 2986200 3277800 2591300 3013400 1596500 2705900 258470 3573200 4696500 5117900 2882700 3134700 3300300 2547100 2915100 2 2 2 2 2 2 2 2 2 2 2 745220 1134700 6665.6 1384800 711940 581810 565530 1225800 1276100 950270 1194300 693920 1059800 67530 1383000 679370 656710 603290 1205600 1264200 939440 1154600 1 1 1 1 1 1 1 1 1 1 1 325830000 250840000 74990000 15006 1695 13752 78399;78400 94756;94757;94758 94756 2282 3 NYPATVHGALLSGLR Unmodified 1567.8471 0.84707518 265 O60341;O60341-2 KDM1A Lysine-specific histone demethylase 1A yes no 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 48.48 48.322 3 6.9393E-24 14906 20211116_3429_TMUAki_TMT10x_P_F2 183.23 151.16 13558000 22583000 170220 25103000 17123000 19458000 13854000 18847000 19172000 16841000 19839000 12625000 21082000 1327600 25347000 16346000 20157000 14388000 19133000 19295000 16531000 19117000 8 8 7 8 8 8 8 8 8 8 8 4497200 7336300 130980 8262200 8958200 11957000 6789700 6877100 7035200 5841500 6499000 4188300 6849000 557400 8418700 8543000 11839000 7008100 7217500 7127400 5747800 6286000 3 3 3 3 3 3 3 3 3 3 3 9060800 15247000 39242 16841000 8165200 7500300 7064000 11970000 12137000 11000000 13339000 8436700 14233000 770250 16928000 7803500 8317400 7380000 11916000 12168000 10783000 12831000 5 5 4 5 5 5 5 5 5 5 5 2365000000 1592400000 772560000 15007 265 13753 78401;78402;78403;78404;78405 94759;94760;94761;94762;94763;94764;94765;94766 94760 8 NYPDPVSIIQK Unmodified 1272.6714 0.67140222 1002 P41252 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 By MS/MS 7 0 1 1 61.784 62.26 2 0.00012585 20822 20211116_3446_TMUAki_TMT10x_S_F7 94.309 76.461 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15008 1002 13754 78406 94767 94767 1 NYPFVNR Unmodified 908.45045 0.45045083 1815 Q15554 TERF2 Telomeric repeat-binding factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 38.203 38.691 2 0.022478 11012 20211116_3435_TMUAki_TMT10x_P_F7 85.357 69.589 703420 1161300 11821 1214700 1681300 1446000 909090 989480 1106100 972010 1131900 655040 1083800 83031 1238900 1593400 1448500 968600 1028500 1117600 950040 1091100 2 2 2 2 2 2 2 2 2 2 2 522260 841530 9523 900580 1480600 1264100 703620 762480 851480 746480 845540 486340 785460 65596 920000 1400700 1254000 758920 800070 859550 729710 815840 1 1 1 1 1 1 1 1 1 1 1 181170 319750 2298 314120 200640 181900 205470 227000 254650 225530 286400 168700 298340 17434 318870 192640 194470 209690 228470 258030 220330 275290 1 1 1 1 1 1 1 1 1 1 1 42907000 25192000 17715000 15009 1815 13755 78407;78408;78409;78410 94768;94769;94770 94768 3 NYQFDFLRPQHSLFNYFTK Unmodified 2464.1964 0.19641498 1810 Q15459;Q15459-2 SF3A1 Splicing factor 3A subunit 1 yes no 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 77.137 77.107 4 0.0027781 24939 20211116_3445_TMUAki_TMT10x_S_F6 60.561 38.758 17254000 28427000 183210 25196000 17830000 31108000 21324000 21179000 20183000 22506000 20843000 16066000 26513000 1477900 26021000 17187000 31103000 21412000 22074000 20606000 21926000 20086000 3 3 2 3 3 3 3 3 3 3 3 10765000 17525000 183210 15333000 10231000 22067000 12346000 13593000 12986000 13548000 12715000 10025000 16344000 1055800 15898000 9874500 21874000 12432000 14246000 13173000 13233000 12274000 2 2 2 2 2 2 2 2 2 2 2 6489300 10902000 0 9862500 7599000 9041300 8978300 7586000 7197000 8958300 8127600 6041100 10169000 422110 10123000 7312400 9228600 8979800 7827400 7432600 8692600 7811600 1 1 0 1 1 1 1 1 1 1 1 1038600000 433920000 604650000 15010 1810 13756 78411;78412 94771;94772;94773 94773 3 NYQQNYQNSESGEKNEGSESAPEGQAQQR Unmodified 3256.3889 0.38893238 1410 P67809 YBX1 Nuclease-sensitive element-binding protein 1 yes yes 0 0 0 1 By MS/MS 3 0 1 1 31.554 31.301 4 2.0385E-121 9570 20211116_3441_TMUAki_TMT10x_S_F3 310.81 304.97 75695 179400 0 233170 97794 88421 100610 174510 522090 101340 519930 70477 167600 6228.7 231910 93817 100940 114950 170900 512620 101990 501620 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 75695 179400 0 233170 97794 88421 100610 174510 522090 101340 519930 70477 167600 6228.7 231910 93817 100940 114950 170900 512620 101990 501620 1 1 0 1 1 1 1 1 1 1 1 33877000 0 33877000 15011 1410 13757 78413 94774 94774 1 NYTDEAIETDDLTIK Unmodified 1739.8101 0.81014013 137 O14818;O14818-2 PSMA7 Proteasome subunit alpha type-7 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 61.767 61.561 3 0.00964 19582 20211116_3442_TMUAki_TMT10x_S_F4 56.959 31.3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15012 137 13758 78414;78415 94775;94776 94776 2 NYTEEEDRFLICMLHK Oxidation (M) 2112.9609 0.96086066 260;844 P28370-2;P28370;O60264 SMARCA1;SMARCA5 Probable global transcription activator SNF2L1;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 no no 0 0 1 1 By MS/MS By MS/MS 4.83 1.07 1 1 2 2 3 3 55.439 55.488 4 2.5185E-07 16560 20211116_3431_TMUAki_TMT10x_P_F4 108.63 81.905 23024000 38355000 163670 38147000 29143000 39942000 24597000 29967000 26633000 27786000 31699000 21438000 35788000 1999300 38958000 27830000 40355000 25250000 30907000 27186000 27228000 30422000 6 6 3 6 6 6 6 6 6 6 6 13805000 21403000 0 22522000 19581000 30588000 16025000 18067000 16188000 16559000 18412000 12852000 19975000 1077600 23018000 18676000 30382000 16446000 18956000 16541000 16234000 17693000 3 3 0 3 3 3 3 3 3 3 3 9219400 16952000 163670 15625000 9562300 9353500 8572000 11900000 10445000 11228000 13286000 8585400 15813000 921690 15940000 9153800 9972800 8804700 11950000 10645000 10993000 12729000 3 3 3 3 3 3 3 3 3 3 3 4012900000 2152500000 1860400000 15013 844;260 13759 78416;78417;78418;78419;78420;78421 94777;94778;94779;94780;94781;94782 94777 208 6 NYTEEEDRFLICMLHK Unmodified 2096.9659 0.96594604 260;844 P28370-2;P28370;O60264 SMARCA1;SMARCA5 Probable global transcription activator SNF2L1;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 no no 0 0 0 1 By MS/MS By MS/MS 4 1.29 1 1 2 1 1 1 5 68.996 68.866 4 4.3201E-21 22092 20211116_3431_TMUAki_TMT10x_P_F4 166.77 130.75 29998000 50285000 555840 53097000 32622000 29474000 33231000 21496000 18116000 22260000 34444000 27935000 46932000 3040400 53615000 31328000 31304000 33208000 22281000 19670000 21708000 32721000 6 6 5 6 6 6 6 6 6 6 6 6681400 10797000 113670 11706000 7133700 10662000 8124700 4900500 3966500 4816200 7134700 6221900 10078000 666210 11862000 6871900 10797000 8060700 5270800 4329600 4707200 6784500 1 1 1 1 1 1 1 1 1 1 1 23317000 39488000 442160 41391000 25488000 18812000 25106000 16596000 14149000 17443000 27309000 21713000 36853000 2374200 41753000 24456000 20507000 25147000 17011000 15341000 17001000 25936000 5 5 4 5 5 5 5 5 5 5 5 4400200000 1162900000 3237300000 15014 844;260 13759 78422;78423;78424;78425;78426;78427 94783;94784;94785;94786;94787;94788 94783 6 NYTGDRLNFGLAR Unmodified 1495.7532 0.75317479 1884 Q3LXA3;Q3LXA3-2 DAK Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing) yes no 0 0 0 1 By MS/MS 1 0 1 1 45.63 45.408 3 4.3593E-09 14217 20211116_3439_TMUAki_TMT10x_S_F1 126.09 102.1 864390 1478900 9692.1 1532700 842750 766720 718840 1448300 1338000 1182300 1361000 804900 1380200 80393 1548400 805540 843650 754790 1430200 1334900 1165600 1312200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 864390 1478900 9692.1 1532700 842750 766720 718840 1448300 1338000 1182300 1361000 804900 1380200 80393 1548400 805540 843650 754790 1430200 1334900 1165600 1312200 1 1 1 1 1 1 1 1 1 1 1 56690000 0 56690000 15015 1884 13760 78428 94789 94789 1 NYTQNIDTLEQVAGIQR Unmodified 1961.9807 0.98066813 2440 Q96EB6;Q96EB6-2 SIRT1 NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment yes no 0 0 0 0 By MS/MS 6 0 1 1 69.989 69.944 3 6.786E-11 21642 20211116_3434_TMUAki_TMT10x_P_F6 123.92 105.56 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15016 2440 13761 78429 94790 94790 1 NYVHFAATQVQNR Unmodified 1546.7641 0.76407383 3209 Q9UPN9;Q9UPN9-2 TRIM33 E3 ubiquitin-protein ligase TRIM33 yes no 0 0 0 0 By MS/MS 1 0 1 1 37.796 37.71 3 0.0014188 11058 20211116_3439_TMUAki_TMT10x_S_F1 69.716 46.111 319810 573410 1437 652510 311460 294030 254260 660900 654830 523320 529860 297790 535350 27737 654720 297290 329900 273290 649320 644210 516770 515010 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 319810 573410 1437 652510 311460 294030 254260 660900 654830 523320 529860 297790 535350 27737 654720 297290 329900 273290 649320 644210 516770 515010 1 1 1 1 1 1 1 1 1 1 1 17601000 0 17601000 15017 3209 13762 78430 94791 94791 1 NYVPPKGDKK Unmodified 1144.6241 0.6240581 817 P26583 HMGB2 High mobility group protein B2 yes yes 0 0 0 2 By MS/MS By MS/MS 1 0 2 1 1 32.008 32.023 4 0.0033104 8710 20211116_3439_TMUAki_TMT10x_S_F1 78.548 62.667 1287800 2265100 10019 1602200 1609900 1913200 1702600 1091000 1287500 1177500 1678300 1199200 2111100 118800 1686000 1546400 1911400 1709400 1153300 1341900 1146500 1606900 2 2 1 2 2 2 2 2 2 2 2 515150 905690 0 585850 674160 992120 651850 463450 536230 490900 661880 479640 843910 43120 626330 645740 973760 658780 498710 555040 478310 634600 1 1 0 1 1 1 1 1 1 1 1 772680 1359400 10019 1016300 935720 921130 1050800 627550 751290 686650 1016400 719520 1267200 75682 1059600 900710 937660 1050600 654630 786820 668180 972320 1 1 1 1 1 1 1 1 1 1 1 82796000 36991000 45805000 15018 817 13763 78431;78432 94792;94793 94793 2 NYYEQWGK Unmodified 1086.4771 0.47705951 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 48.442 48.833 2;3 0.00056581 13322 20211116_3445_TMUAki_TMT10x_S_F6 138.1 91.285 6246200 9828600 62991 17478000 13239000 6274000 8789200 4032800 4670000 4336400 12220000 5815600 9199800 577560 17123000 12580000 7032300 9020400 4222500 5199100 4222700 11555000 2 2 1 2 2 2 2 2 2 2 2 1912000 3025100 62991 4670500 11185000 4318400 5071800 1657800 1641300 1571700 3483600 1780700 2828900 347100 4643200 10575000 4361300 5358000 1817200 1885200 1538600 3303500 1 1 1 1 1 1 1 1 1 1 1 4334200 6803500 0 12808000 2053900 1955600 3717400 2375100 3028800 2764700 8736400 4034800 6370900 230470 12480000 2004900 2671000 3662400 2405300 3313900 2684100 8251000 1 1 0 1 1 1 1 1 1 1 1 480430000 199790000 280640000 15019 772 13764 78433;78434;78435 94794;94795;94796 94796 3 NYYGYQGYR Unmodified 1182.5094 0.50942227 1874 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 36.414 36.612 2 6.3389E-06 10157 20211116_3435_TMUAki_TMT10x_P_F7 172.91 112.22 957160 1529300 9553 2278400 5502900 3311000 1573600 1691000 2379200 1073900 1895500 891200 1429800 141710 2286900 5177600 3272900 1826600 1782600 2368000 1074200 1843500 6 6 2 6 6 6 6 6 6 6 6 871620 1375700 7482.7 2062900 5407700 3231700 1493700 1546300 2185400 978600 1715700 811550 1286300 133940 2073400 5086700 3182300 1741200 1640200 2176300 979140 1669700 4 4 1 4 4 4 4 4 4 4 4 85538 153560 2070.3 215550 95171 79268 79903 144730 193800 95267 179790 79649 143520 7779.3 213480 90906 90630 85374 142370 191680 95081 173870 2 2 1 2 2 2 2 2 2 2 2 184610000 182410000 2197400 15020 1874 13765 78436;78437;78438 94797;94798;94799;94800;94801;94802 94800 6 PAASITSKPATLTTTSATSK Unmodified 1933.0368 0.036786022 230 O43670;O43670-2;O43670-3;O43670-4 ZNF207 BUB3-interacting and GLEBS motif-containing protein ZNF207 yes no 0 0 0 1 By MS/MS 3 0 1 1 45.221 44.88 3 1.0424E-77 15037 20211116_3441_TMUAki_TMT10x_S_F3 267.7 243.66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15021 230 13766 78439 94803 94803 1 PADEIAVDR Unmodified 984.48762 0.4876242 1859 Q16658 FSCN1 Fascin yes yes 0 0 0 0 By MS/MS 2 0 1 1 33.878 33.959 2 0.04284 7781 20211116_3440_TMUAki_TMT10x_S_F2 63.419 30.298 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15022 1859 13767 78440 94804 94804 1 PAGGPKPPSGK Unmodified 991.54508 0.5450795 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 30.665 30.689 3 0.0043776 8201 20211116_3439_TMUAki_TMT10x_S_F1 66.023 48.792 515650 933960 4413 795160 580020 620650 730210 313200 416010 393940 640860 480130 870960 44306 818380 559960 636130 723110 336370 444950 381410 611250 2 2 1 2 2 2 2 2 2 2 2 197570 331180 4413 323830 333210 349940 258730 132980 171540 145370 245030 183990 309000 22392 331270 317900 350010 263630 146530 180940 141470 234090 1 1 1 1 1 1 1 1 1 1 1 318080 602780 0 471320 246800 270710 471490 180220 244470 248570 395830 296140 561960 21914 487110 242070 286120 459470 189850 264010 239950 377160 1 1 0 1 1 1 1 1 1 1 1 22100000 10743000 11358000 15023 1146 13768 78441;78442 94805;94806 94806 2 PAHLLQDDISSSYTTTTTITAPPSR Unmodified 2672.3293 0.32933923 110 O00767 SCD Acyl-CoA desaturase yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 58.342 58.727 3 4.8075E-19 17373 20211116_3445_TMUAki_TMT10x_S_F6 130.65 115.72 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15024 110 13769 78443;78444 94807;94808 94808 2 PAIMTMLADHAAR 2 Oxidation (M) 1428.6854 0.6853545 153 O14980 XPO1 Exportin-1 yes yes 0 0 2 0 By MS/MS 5 0 1 1 32.192 32.356 3 0.064546 6471 20211116_3444_TMUAki_TMT10x_S_F5 41.092 25.201 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15025 153 13770 78445 94809 94809 113;114 1 PAKYDDIK Unmodified 948.49165 0.49164694 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 1 By MS/MS 5 0 1 1 36.387 36.549 3 0.019008 8137 20211116_3444_TMUAki_TMT10x_S_F5 64.841 30.12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15026 489 13771 78446 94810 94810 1 PAPPKPEPKPK Unmodified 1184.6917 0.69174374 505 P05204 HMGN2 Non-histone chromosomal protein HMG-17 yes yes 0 0 0 2 By MS/MS By MS/MS 1 0 2 1 1 32.41 32.426 4 0.0028493 8875 20211116_3439_TMUAki_TMT10x_S_F1 76.522 58.778 3986700 6700700 88677 6929900 3333500 3267700 5043300 1660800 2301000 2141300 4242700 3712700 6253400 404020 6998700 3244700 3518700 4941300 1784100 2529800 2071500 4032600 2 2 2 2 2 2 2 2 2 2 2 1690300 2649300 55826 2680900 1329500 1836500 1579600 698000 1002400 863930 1648300 1574200 2472200 187110 2720100 1284500 1897400 1571300 772100 1067900 836920 1570100 1 1 1 1 1 1 1 1 1 1 1 2296500 4051400 32851 4249000 2004000 1431200 3463700 962830 1298600 1277400 2594400 2138500 3781200 216910 4278600 1960200 1621300 3370000 1012000 1461900 1234600 2462600 1 1 1 1 1 1 1 1 1 1 1 310370000 130970000 179400000 15027 505 13772 78447;78448 94811;94812 94812 2 PAPPKPEPKPR Unmodified 1212.6979 0.69789175 1823 Q15651;Q15651-2 HMGN3 High mobility group nucleosome-binding domain-containing protein 3 yes no 0 0 0 2 By MS/MS 1 0 1 1 30.331 30.397 3 0.0036801 8105 20211116_3439_TMUAki_TMT10x_S_F1 68.355 7.0117 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15028 1823 13773 78449 94813 94813 1 PAPVAQPPAAAPPSAVGSSAAAPR Unmodified 2137.128 0.12800107 3351 Q9Y6H1;Q5T1J5 CHCHD2;CHCHD2P9 Coiled-coil-helix-coiled-coil-helix domain-containing protein 2;Putative coiled-coil-helix-coiled-coil-helix domain-containing protein CHCHD2P9, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 43.473 43.484 3 1.0468E-18 11485 20211116_3436_TMUAki_TMT10x_P_F8 126.62 115.64 169130 298940 14307 407520 134750 122630 125220 263510 302030 242430 322040 157580 279350 26875 403810 129840 145660 132990 260180 300240 237640 310050 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 169130 298940 14307 407520 134750 122630 125220 263510 302030 242430 322040 157580 279350 26875 403810 129840 145660 132990 260180 300240 237640 310050 1 1 1 1 1 1 1 1 1 1 1 49148000 0 49148000 15029 3351 13774 78450;78451 94814;94815 94814 2 PAQPQEHPFASSR Unmodified 1450.6953 0.69532556 1809 Q15437 SEC23B Protein transport protein Sec23B yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 29.346 29.33 3 3.8478E-06 6454 20211116_3433_TMUAki_TMT10x_P_F5 102.9 89.241 366040 632890 2798.1 612380 1021100 742940 518450 431580 482090 364280 600050 340840 590480 42129 628130 966590 741800 551040 452500 496220 358550 575200 2 2 2 2 2 2 2 2 2 2 2 366040 632890 2798.1 612380 1021100 742940 518450 431580 482090 364280 600050 340840 590480 42129 628130 966590 741800 551040 452500 496220 358550 575200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23329000 23329000 0 15030 1809 13775 78452;78453 94816;94817 94817 2 PASGPIRPIVR Unmodified 1161.6982 0.6982261 813 P26373;P26373-2 RPL13 60S ribosomal protein L13 yes no 0 0 0 1 By MS/MS By MS/MS 2.2 1.17 2 1 1 1 3 2 33.007 32.922 3 5.6336E-15 8626 20211116_3429_TMUAki_TMT10x_P_F2 194.17 165.44 8038000 13639000 14288 11503000 10421000 11255000 8404100 6723800 7435600 7161900 10071000 7484200 12719000 713060 11882000 9942500 11380000 8600200 7078100 7700300 6976600 9633300 5 5 4 5 5 5 5 5 5 5 5 5783400 9563400 7265.8 7972600 8600200 9474100 5670000 4813800 5422500 5087400 7189700 5384900 8917700 525660 8268200 8173000 9454200 5896900 5137700 5590000 4957300 6880900 3 3 2 3 3 3 3 3 3 3 3 2254600 4075500 7022 3530800 1821000 1781100 2734100 1910100 2013000 2074500 2881100 2099300 3800800 187390 3614300 1769400 1925300 2703300 1940500 2110300 2019300 2752400 2 2 2 2 2 2 2 2 2 2 2 1756900000 1158900000 598020000 15031 813 13776 78454;78455;78456;78457;78458 94818;94819;94820;94821;94822 94819 5 PAYFQRPENALK Unmodified 1432.7463 0.7462985 1684 Q14152 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 44.337 44.316 3 4.3803E-06 11659 20211116_3428_TMUAki_TMT10x_P_F1 112.44 84.424 11346000 20048000 375470 23602000 30347000 24936000 15502000 14484000 16989000 12705000 17160000 10567000 18720000 1540100 23847000 28746000 25086000 16546000 15201000 17225000 12482000 16548000 5 5 4 5 5 5 5 5 5 5 5 8256000 14814000 339550 17185000 28333000 22827000 13382000 10354000 12310000 9094000 12373000 7689700 13832000 1282100 17449000 26812000 22627000 14323000 11119000 12572000 8933600 11934000 3 3 3 3 3 3 3 3 3 3 3 3090400 5234400 35918 6416800 2013600 2108200 2119500 4129900 4679600 3611100 4787000 2877600 4888700 257930 6398300 1934500 2458900 2223600 4081400 4652500 3548200 4614500 2 2 1 2 2 2 2 2 2 2 2 537950000 406780000 131170000 15032 1684 13777 78459;78460;78461;78462 94823;94824;94825;94826;94827 94823 5 PDIPNIALIPK Unmodified 1189.7071 0.70705945 3394 yes no 0 0 0 0 By MS/MS 5 0 1 1 79.72 79.732 2 0.099239 26826 20211116_3433_TMUAki_TMT10x_P_F5 53.472 35.74 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15033 3394 13778 78463 94828 94828 1 PEFLEDPSVLTK Unmodified 1373.7078 0.70784731 1006;1007 P42166;P42167;P42167-2;P42167-3 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 0 0 By MS/MS By MS/MS 3.85 1.35 4 5 4 4 3 11 9 71.465 71.349 2;3 1.7659E-16 25868 20211116_3441_TMUAki_TMT10x_S_F3 206.97 151.51 191900000 330360000 1192100 327100000 214010000 226040000 220630000 175810000 178410000 183530000 242540000 178680000 308250000 16249000 332410000 205370000 235380000 222140000 181520000 185620000 178920000 231990000 28 28 19 28 28 28 28 28 28 28 28 72533000 120360000 303180 120220000 85866000 121550000 94611000 62846000 62002000 66974000 87493000 67533000 112310000 5892900 122680000 82532000 122420000 94501000 66984000 65408000 65241000 83612000 9 9 4 9 9 9 9 9 9 9 9 119370000 210000000 888910 206880000 128150000 104490000 126020000 112960000 116410000 116550000 155050000 111140000 195940000 10356000 209740000 122840000 112950000 127640000 114530000 120220000 113680000 148380000 19 19 15 19 19 19 19 19 19 19 19 15500000000 8692800000 6807300000 15034 1006;1007 13779 78464;78465;78466;78467;78468;78469;78470;78471;78472;78473;78474;78475;78476;78477;78478;78479;78480;78481;78482;78483 94829;94830;94831;94832;94833;94834;94835;94836;94837;94838;94839;94840;94841;94842;94843;94844;94845;94846;94847;94848;94849;94850;94851;94852;94853;94854;94855;94856;94857 94844 29 PEIVDTCSLASPASVCR Unmodified 1860.871 0.87098302 589 P09960;P09960-2 LTA4H Leukotriene A-4 hydrolase yes no 0 0 0 0 By MS/MS 5 0 1 1 55.37 55.567 3 0.049705 16903 20211116_3433_TMUAki_TMT10x_P_F5 40.186 20.08 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15035 589 13780 78484 94858 94858 1 PFETLLSQNQGGK Unmodified 1417.7201 0.72014333 571 P09211 GSTP1 Glutathione S-transferase P yes yes 0 0 0 0 By MS/MS 3 0 1 1 85.92 85.889 2 0.0018732 30623 20211116_3430_TMUAki_TMT10x_P_F3 70.389 43.875 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15036 571 13781 78485 94859 94859 1 PFFHSLSEK Unmodified 1090.5447 0.54474515 607 P10599 TXN Thioredoxin yes yes 0 0 0 0 By MS/MS 8 0 1 1 48.246 48.35 3 0.00028543 13453 20211116_3436_TMUAki_TMT10x_P_F8 86.136 54.95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15037 607 13782 78486 94860 94860 1 PFLLPVEAVYSVPGR Unmodified 1642.9083 0.90827845 1097 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 2.8 0.4 1 4 3 2 79.53 79.482 2;3 1.4489E-23 29009 20211116_3441_TMUAki_TMT10x_S_F3 186.81 164.07 22026000 32324000 90592 44075000 15203000 12955000 20490000 5453500 5467100 5867500 18129000 20509000 30205000 1747400 43669000 14711000 14948000 20043000 5935700 6668500 5713500 17097000 4 4 2 4 4 4 4 4 4 4 4 10842000 14733000 90592 20742000 4987100 6964200 5955600 3116400 3178600 3285200 8957300 10095000 13770000 901290 20529000 4811700 7858000 5904400 3367700 3560300 3201500 8461900 2 2 2 2 2 2 2 2 2 2 2 11185000 17591000 0 23334000 10215000 5990500 14535000 2337100 2288400 2582400 9171900 10414000 16435000 846090 23139000 9899200 7090400 14138000 2567900 3108200 2512000 8634800 2 2 0 2 2 2 2 2 2 2 2 3680300000 1446000000 2234300000 15038 1097 13783 78487;78488;78489;78490;78491 94861;94862;94863;94864;94865 94864 5 PFLWLAR Unmodified 901.51741 0.51740818 1368 P62826 RAN GTP-binding nuclear protein Ran yes yes 0 0 0 0 By MS/MS By MS/MS 6.71 1.03 1 2 2 2 4 3 74.796 74.823 2 0.0013904 23693 20211116_3434_TMUAki_TMT10x_P_F6 181.07 151.92 32146000 51702000 452.08 65212000 28239000 21096000 35127000 8641800 6702200 10127000 28454000 29928000 48294000 2200300 64913000 27224000 23932000 34391000 9459400 8834100 9829400 26775000 6 6 1 6 6 6 6 6 6 6 6 15565000 24036000 0 30329000 15418000 15117000 17865000 4266000 3436200 5086100 13107000 14490000 22452000 1012000 30269000 14827000 16095000 17547000 4909600 4470300 4933600 12345000 3 3 0 3 3 3 3 3 3 3 3 16581000 27666000 452.08 34883000 12822000 5978500 17262000 4375800 3266100 5041000 15347000 15438000 25842000 1188300 34644000 12397000 7837400 16844000 4549800 4363800 4895900 14431000 3 3 1 3 3 3 3 3 3 3 3 3582300000 1773400000 1808900000 15039 1368 13784 78492;78493;78494;78495;78496;78497;78498 94866;94867;94868;94869;94870;94871;94872 94867 7 PFPDGLAEDIDKGEVSAR Unmodified 1914.9323 0.93232095 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 1 By MS/MS 2 0 1 1 63.02 62.731 3 0.00015345 20798 20211116_3429_TMUAki_TMT10x_P_F2 69.975 51.143 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15040 653 13785 78499 94873 94873 1 PGGLLLGDVAPNFEANTTVGR Unmodified 2097.0855 0.085467549 859 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 0 0 By MS/MS By MS/MS 5.95 1.36 1 2 4 4 6 2 11 8 74.624 74.65 2;3 3.7625E-83 26946 20211116_3446_TMUAki_TMT10x_S_F7 293.25 268.91 65484000 111300000 691060 96692000 74696000 88794000 89421000 64348000 64549000 63328000 86291000 60975000 103800000 5954200 99555000 72018000 90395000 89164000 66627000 67528000 61891000 82569000 19 19 12 19 19 19 19 19 19 19 19 27750000 47635000 256290 42520000 24317000 49227000 34976000 28498000 27761000 28462000 36633000 25839000 44430000 2370500 43839000 23591000 49269000 34697000 30020000 28872000 27799000 35064000 10 10 7 10 10 10 10 10 10 10 10 37734000 63663000 434770 54172000 50379000 39567000 54445000 35850000 36789000 34866000 49658000 35137000 59369000 3583700 55716000 48426000 41126000 54467000 36607000 38656000 34092000 47505000 9 9 5 9 9 9 9 9 9 9 9 27822000000 13222000000 14601000000 15041 859 13786 78500;78501;78502;78503;78504;78505;78506;78507;78508;78509;78510;78511;78512;78513;78514;78515;78516;78517;78518 94874;94875;94876;94877;94878;94879;94880;94881;94882;94883;94884;94885;94886;94887;94888;94889;94890;94891;94892;94893;94894 94893 21 PGHLQEGFGCVVTNR Unmodified 1669.7995 0.79947306 2232 Q8NC51;Q8NC51-3;Q8NC51-2;Q8NC51-4 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 0 0 0 0 By MS/MS By MS/MS 6.14 0.742 2 9 2 1 3 11 39.337 39.504 3 1.2269E-33 11280 20211116_3435_TMUAki_TMT10x_P_F7 223.7 210.3 5015100 8474800 96369 9987800 8428000 8341500 5764500 6249300 6181300 5505100 7247400 4669900 7913500 497270 10058000 8017600 8552300 5999300 6437100 6308000 5407300 6958300 13 13 10 13 13 13 13 13 13 13 13 2929400 4779400 61507 5590400 6716700 6703600 4003400 3561700 3469500 3041900 4072600 2727800 4462700 325510 5662500 6374000 6689900 4186200 3764300 3574400 2992300 3910000 4 4 3 4 4 4 4 4 4 4 4 2085700 3695300 34862 4397300 1711400 1637900 1761000 2687500 2711700 2463300 3174800 1942100 3450800 171760 4395200 1643600 1862400 1813100 2672800 2733500 2415000 3048300 9 9 7 9 9 9 9 9 9 9 9 3325500000 2867400000 458130000 15042 2232 13787 78519;78520;78521;78522;78523;78524;78525;78526;78527;78528;78529;78530;78531;78532 94895;94896;94897;94898;94899;94900;94901;94902;94903;94904;94905;94906;94907;94908;94909;94910;94911;94912;94913;94914 94898 20 PGIVELPTLEELKVDEVK Unmodified 2007.114 0.11397371 1167 P51970 NDUFA8 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 yes yes 0 0 0 1 By MS/MS 5 0 1 1 77.608 77.627 3 0.00027174 25982 20211116_3433_TMUAki_TMT10x_P_F5 67.685 57.217 4417400 6628200 0 5955600 3036400 5752600 4290600 3397900 3353400 3536900 4420800 4112800 6182300 319950 6120200 2941200 5820000 4257500 3577700 3490400 3448600 4231600 1 1 0 1 1 1 1 1 1 1 1 4417400 6628200 0 5955600 3036400 5752600 4290600 3397900 3353400 3536900 4420800 4112800 6182300 319950 6120200 2941200 5820000 4257500 3577700 3490400 3448600 4231600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 616030000 616030000 0 15043 1167 13788 78533 94915 94915 1 PGPCSSPGSASQASSSQVSSLR Unmodified 2132.9757 0.9756591 1947 Q5VST9;Q5VST9-2;Q5VST9-6 OBSCN Obscurin yes no 0 0 0 0 By MS/MS 2 0 1 1 67.791 67.588 3 0.10707 21476 20211116_3440_TMUAki_TMT10x_S_F2 21.2 5.0778 1988600 3381600 12585 3742800 2582500 2127600 2313600 2505100 2239900 2060400 2621000 1851600 3156700 184910 3768600 2470200 2275600 2358500 2514600 2295400 2030600 2516600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1988600 3381600 12585 3742800 2582500 2127600 2313600 2505100 2239900 2060400 2621000 1851600 3156700 184910 3768600 2470200 2275600 2358500 2514600 2295400 2030600 2516600 1 1 1 1 1 1 1 1 1 1 1 1020100000 0 1020100000 15044 1947 13789 78534 94916 94916 1 PGVTVKDVNQQEFVR Unmodified 1714.9002 0.90023296 974 P39019 RPS19 40S ribosomal protein S19 yes yes 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 45.344 45.592 3 3.1E-19 12002 20211116_3445_TMUAki_TMT10x_S_F6 163.91 153.63 6186000 12482000 68259 8027100 12057000 15767000 9235100 21069000 20825000 15609000 14772000 5760200 11631000 647160 8619400 11494000 15704000 9873900 20990000 20464000 15469000 14438000 3 3 2 3 3 3 3 3 3 3 3 2299400 4761200 40199 2903600 7180400 10796000 5768300 8644300 8141600 6283300 5857600 2141300 4435800 296460 3211400 6851800 10463000 5998300 8826900 8097800 6233900 5721300 1 1 1 1 1 1 1 1 1 1 1 3886700 7721300 28060 5123500 4877000 4971400 3466800 12424000 12683000 9325300 8914800 3619000 7195100 350690 5408000 4641800 5241400 3875600 12163000 12366000 9235300 8716400 2 2 1 2 2 2 2 2 2 2 2 948690000 438910000 509780000 15045 974 13790 78535;78536;78537;78538 94917;94918;94919;94920 94919 4 PHAFKPGDLVFAK Unmodified 1425.7769 0.77687035 2083 Q7Z4V5;Q7Z4V5-2;Q7Z4V5-4;Q7Z4V5-3 HDGFRP2 Hepatoma-derived growth factor-related protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 2.4 0.49 3 2 3 2 52.249 52.02 3;4 6.6258E-06 18059 20211116_3441_TMUAki_TMT10x_S_F3 102.66 88.998 16549000 26046000 224820 27955000 22839000 22646000 19120000 19969000 20462000 17632000 21498000 15409000 24311000 1525600 28305000 21810000 23338000 19630000 20369000 20794000 17317000 20706000 5 5 3 5 5 5 5 5 5 5 5 9121900 13845000 145080 15226000 16012000 17085000 12935000 10677000 11339000 9828100 11282000 8493800 12924000 906550 15464000 15279000 17146000 13232000 11154000 11603000 9633600 10885000 2 2 1 2 2 2 2 2 2 2 2 7427200 12201000 79735 12729000 6827200 5561400 6185000 9292100 9122700 7804300 10216000 6915500 11387000 619010 12841000 6530800 6191600 6398300 9214800 9191000 7683400 9821200 3 3 2 3 3 3 3 3 3 3 3 1784700000 1036100000 748570000 15046 2083 13791 78539;78540;78541;78542;78543 94921;94922;94923;94924;94925;94926 94926 6 PHLENVVLCR Unmodified 1235.6445 0.64447597 254 O43913;O43913-2 ORC5 Origin recognition complex subunit 5 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 39.994 40.084 3 0.00042266 9718 20211116_3445_TMUAki_TMT10x_S_F6 94.309 41.372 1780400 3067600 5514.8 3807500 4910600 3806900 2151900 2365700 2662800 2242900 2646200 1657500 2865100 168210 3832000 4637700 3845800 2342800 2474400 2686000 2195600 2553200 2 2 1 2 2 2 2 2 2 2 2 1331500 2374200 0 2919300 4402400 3410500 1685900 1803700 2069300 1756400 1986800 1239600 2217400 125030 2947000 4151100 3408000 1864000 1913500 2085400 1717300 1919100 1 1 0 1 1 1 1 1 1 1 1 448820 693370 5514.8 888150 508170 396350 465990 562050 593580 486520 659390 417940 647710 43181 884940 486530 437830 478830 560830 600620 478270 634050 1 1 1 1 1 1 1 1 1 1 1 253150000 190660000 62486000 15047 254 13792 78544;78545 94927;94928 94928 2 PIFSRDMNEAK Unmodified 1306.634 0.63397086 1260 P56556 NDUFA6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 yes yes 0 0 0 1 By MS/MS 8 0 1 1 37.968 38.241 3 0.1072 9136 20211116_3436_TMUAki_TMT10x_P_F8 34.378 6.7574 214910 366000 9468.9 428900 504330 498260 309020 308260 314020 273210 313760 200170 341750 30696 434140 479240 499050 323820 321960 319230 268280 302680 1 1 1 1 1 1 1 1 1 1 1 214910 366000 9468.9 428900 504330 498260 309020 308260 314020 273210 313760 200170 341750 30696 434140 479240 499050 323820 321960 319230 268280 302680 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 319820000 319820000 0 15048 1260 13793 78546 94929 94929 1 PIKPSPPYFGLLLASVGR Unmodified 1911.0982 0.098204487 709 P17812;P17812-2 CTPS1 CTP synthase 1 yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 78.299 78.277 3 5.3878E-12 25111 20211116_3447_TMUAki_TMT10x_S_F8 129.12 93.815 15515000 27688000 109730 23180000 15742000 23618000 21999000 11812000 12840000 14943000 16900000 14447000 25819000 1391700 23973000 15258000 23768000 21704000 12699000 13608000 14465000 16177000 2 2 2 2 2 2 2 2 2 2 2 9386800 15962000 54982 13990000 8708100 16778000 12889000 6804300 7908300 8902300 9768000 8740400 14886000 819970 14453000 8458200 16696000 12701000 7484200 8329300 8608000 9365200 1 1 1 1 1 1 1 1 1 1 1 6128100 11726000 54747 9190100 7034000 6840300 9110300 5007300 4931900 6040400 7131800 5706300 10932000 571770 9519400 6800000 7072200 9003000 5214500 5278300 5856800 6811700 1 1 1 1 1 1 1 1 1 1 1 1963400000 1091800000 871580000 15049 709 13794 78547;78548 94930;94931 94931 2 PKHEFSVDMTCGGCAEAVSR Oxidation (M) 2252.9613 0.96127137 76 O00244 ATOX1 Copper transport protein ATOX1 yes yes 0 0 1 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 34.004 34.073 4 1.8324E-24 8283 20211116_3433_TMUAki_TMT10x_P_F5 169.51 159.12 933090 1471400 14609 1712100 1621600 1535900 1029800 827380 911290 709840 1202000 868820 1373900 88709 1727000 1540200 1559600 1071800 873460 942580 698110 1150500 7 7 3 7 7 7 7 7 7 7 7 814500 1265000 14039 1473700 1502400 1449200 921090 711490 781620 611480 1038400 758410 1181100 81237 1488300 1426300 1461200 960380 757630 810380 601330 993770 4 4 2 4 4 4 4 4 4 4 4 118590 206430 570.23 238340 119130 86734 108670 115880 129660 98356 163610 110410 192740 7472.7 238630 113950 98365 111420 115830 132200 96782 156780 3 3 1 3 3 3 3 3 3 3 3 220030000 192590000 27440000 15050 76 13795 78549;78550;78551;78552 94932;94933;94934;94935;94936;94937;94938 94932 45 7 PKHEFSVDMTCGGCAEAVSR Unmodified 2236.9664 0.96635675 76 O00244 ATOX1 Copper transport protein ATOX1 yes yes 0 0 0 1 By MS/MS 6 0 1 1 39.108 39.113 4 4.4026E-09 9086 20211116_3434_TMUAki_TMT10x_P_F6 114.02 110.05 608540 950330 8363.1 1076300 1211300 1177600 743650 615900 704560 561710 717910 566680 887230 66688 1090600 1150200 1180700 777560 652930 718950 550830 692130 1 1 1 1 1 1 1 1 1 1 1 608540 950330 8363.1 1076300 1211300 1177600 743650 615900 704560 561710 717910 566680 887230 66688 1090600 1150200 1180700 777560 652930 718950 550830 692130 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 96471000 96471000 0 15051 76 13795 78553 94939 94939 1 PKPINVR Unmodified 822.50757 0.50757178 682;926 P15311;P35241;P35241-5;P35241-3 EZR;RDX Ezrin;Radixin no no 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 31.016 30.908 3 0.0034881 6370 20211116_3428_TMUAki_TMT10x_P_F1 102.77 87.908 4117900 7527200 23383 6112200 4199000 6177400 4210700 2669300 3857000 3065800 5345500 3834300 7018400 361770 6336400 4027800 6210300 4259500 2902900 3992100 2977800 5110500 4 4 3 4 4 4 4 4 4 4 4 2479600 4510800 17457 3553400 2286100 4800000 1961200 1573700 2294800 1828500 3148000 2308900 4205500 219140 3711300 2184900 4740500 2016600 1770500 2350300 1775300 3010300 2 2 2 2 2 2 2 2 2 2 2 1638300 3016400 5925.3 2558800 1913000 1377400 2249500 1095600 1562100 1237300 2197600 1525400 2812900 142640 2625100 1842900 1469800 2242900 1132400 1641800 1202500 2100200 2 2 1 2 2 2 2 2 2 2 2 300120000 237800000 62318000 15052 682;926 13796 78554;78555;78556;78557 94940;94941;94942;94943 94940 4 PLELELCPGR Unmodified 1182.6067 0.60669348 2921 Q9NR45 NANS Sialic acid synthase yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 59.229 59.165 2 3.8384E-07 18570 20211116_3442_TMUAki_TMT10x_S_F4 113.71 94.961 14468000 22821000 148210 21423000 20678000 29781000 19453000 17200000 15136000 16523000 18517000 13472000 21289000 1333200 22078000 19799000 29540000 19662000 18103000 15707000 16165000 17758000 2 2 1 2 2 2 2 2 2 2 2 14468000 22821000 148210 21423000 20678000 29781000 19453000 17200000 15136000 16523000 18517000 13472000 21289000 1333200 22078000 19799000 29540000 19662000 18103000 15707000 16165000 17758000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1240800000 1240800000 0 15053 2921 13797 78558;78559;78560;78561 94944;94945;94946 94945 3 PLENLEEEGLPKNPDLR Unmodified 1962.0058 0.0058202445 1750 Q15008;Q15008-4 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 1 2 61.074 60.798 3 6.2978E-05 21558 20211116_3441_TMUAki_TMT10x_S_F3 81.723 66.469 19806000 38787000 492050 30257000 21195000 27509000 20943000 41005000 40764000 38435000 34273000 18444000 36160000 2034300 31429000 20341000 28498000 21870000 40933000 40373000 37643000 33262000 4 4 3 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19806000 38787000 492050 30257000 21195000 27509000 20943000 41005000 40764000 38435000 34273000 18444000 36160000 2034300 31429000 20341000 28498000 21870000 40933000 40373000 37643000 33262000 4 4 3 4 4 4 4 4 4 4 4 1095400000 0 1095400000 15054 1750 13798 78562;78563;78564 94947;94948;94949 94949 3 PLEVAIEASNGASDYGNK Unmodified 1833.8745 0.87447172 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 0 By MS/MS 4 0 2 2 67.356 67.44 3 0.10582 21346 20211116_3431_TMUAki_TMT10x_P_F4 25.586 12.606 3060500 4961600 111300 5200800 3513800 5889800 3676400 3569900 2942500 3488300 3807300 2850400 4630600 363810 5299100 3380000 5905500 3697900 3744300 3056300 3410200 3646000 1 1 1 1 1 1 1 1 1 1 1 3060500 4961600 111300 5200800 3513800 5889800 3676400 3569900 2942500 3488300 3807300 2850400 4630600 363810 5299100 3380000 5905500 3697900 3744300 3056300 3410200 3646000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 643780000 643780000 0 15055 157 13799 78565;78566 94950;94951 94951 2 PLFATNPFDQDVEK Unmodified 1619.7831 0.78313752 2363 Q92783;Q92783-2 STAM Signal transducing adapter molecule 1 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 75.171 75.111 3 1.7389E-05 24138 20211116_3445_TMUAki_TMT10x_S_F6 100.11 77.788 2409500 4400400 5391 3965800 3422900 2589900 2981400 2526000 2392600 2511100 3472300 2243500 4104400 218980 4055900 3271300 2721800 3029100 2571000 2498100 2453100 3316200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2409500 4400400 5391 3965800 3422900 2589900 2981400 2526000 2392600 2511100 3472300 2243500 4104400 218980 4055900 3271300 2721800 3029100 2571000 2498100 2453100 3316200 1 1 1 1 1 1 1 1 1 1 1 432400000 0 432400000 15056 2363 13800 78567;78568 94952;94953 94953 2 PLFPHVLCHNCAVEFNFGQK Unmodified 2413.146 0.14597609 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 By MS/MS By MS/MS 3.11 0.737 2 4 3 5 4 64.794 64.533 3;4 4.1076E-32 23138 20211116_3441_TMUAki_TMT10x_S_F3 183.7 173.6 130610000 216140000 1249500 207040000 123650000 173840000 155740000 93548000 74710000 101220000 136410000 121620000 201650000 11589000 211360000 119430000 177340000 153780000 99395000 81739000 98543000 129680000 19 19 10 19 19 19 19 19 19 19 19 82910000 134900000 875540 128550000 81050000 132380000 100730000 58991000 45826000 64854000 85749000 77203000 125850000 7442000 131640000 78248000 132980000 99447000 63857000 50439000 63098000 81483000 11 11 7 11 11 11 11 11 11 11 11 47698000 81246000 373920 78490000 42604000 41459000 55005000 34558000 28884000 36369000 50660000 44414000 75801000 4146600 79714000 41179000 44364000 54337000 35539000 31300000 35446000 48196000 8 8 3 8 8 8 8 8 8 8 8 22935000000 10981000000 11955000000 15057 1474 13801 78569;78570;78571;78572;78573;78574;78575;78576;78577 94954;94955;94956;94957;94958;94959;94960;94961;94962;94963;94964;94965;94966;94967;94968;94969;94970;94971;94972;94973 94971 20 PLISVYSEK Unmodified 1034.5648 0.56481189 953 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 55.648 56.377 2 3.7532E-06 16257 20211116_3447_TMUAki_TMT10x_S_F8 162.97 97.932 7965100 12559000 196080 14023000 13836000 13295000 8914100 5954800 6637800 6738600 9242800 7417700 11725000 925330 14192000 13155000 13424000 9228800 6448300 6944900 6548900 8835500 1 1 1 1 1 1 1 1 1 1 1 7965100 12559000 196080 14023000 13836000 13295000 8914100 5954800 6637800 6738600 9242800 7417700 11725000 925330 14192000 13155000 13424000 9228800 6448300 6944900 6548900 8835500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 805640000 805640000 0 15058 953 13802 78578;78579;78580;78581 94974;94975;94976;94977 94977 4 PLRLPLQDVYK Unmodified 1340.7816 0.78162138 1416;1520 P68104;Q5VTE0;Q05639 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2 no no 0 0 0 1 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 59.886 59.642 3 2.96E-12 19955 20211116_3430_TMUAki_TMT10x_P_F3 178.65 149.18 70052000 112490000 655530 160630000 71713000 67299000 61715000 50356000 48200000 47344000 76582000 65228000 105150000 6240200 159080000 68537000 73936000 62704000 51963000 50634000 46363000 72998000 8 8 4 8 8 8 8 8 8 8 8 33470000 51760000 235090 77850000 41899000 45650000 33025000 21535000 21767000 20495000 34837000 31164000 48395000 2970900 77096000 39956000 47949000 33615000 23081000 23101000 20059000 33202000 3 3 2 3 3 3 3 3 3 3 3 36582000 60731000 420430 82782000 29814000 21650000 28689000 28821000 26433000 26849000 41745000 34064000 56751000 3269300 81980000 28580000 25987000 29090000 28882000 27533000 26304000 39796000 5 5 2 5 5 5 5 5 5 5 5 10860000000 6043400000 4816400000 15059 1416;1520 13803 78582;78583;78584;78585;78586;78587 94978;94979;94980;94981;94982;94983;94984;94985 94980 8 PLTLTMQAVPSRVPLTDK Unmodified 1966.0921 0.092132831 3378 yes no 0 0 0 1 By MS/MS By MS/MS 2 0 3 2 1 62.006 61.741 3 0.052275 20405 20211116_3429_TMUAki_TMT10x_P_F2 41.554 28.787 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15060 3378 13804 78588;78589;78590 94986;94987;94988 94987 3 PLYSVTVK Unmodified 905.52222 0.52221879 1220 P54578;P54578-2;P54578-3 USP14 Ubiquitin carboxyl-terminal hydrolase 14 yes no 0 0 0 0 By MS/MS By MS/MS 4 3.29 2 1 2 2 3 51.866 51.81 2 0.00019323 14750 20211116_3428_TMUAki_TMT10x_P_F1 163.77 96.017 6349900 10907000 62891 11195000 9278000 10580000 8141200 7889800 8014300 7930600 9028800 5912900 10178000 626070 11391000 8871400 10756000 8313500 8158800 8194700 7743700 8678300 2 2 2 2 2 2 2 2 2 2 2 3394500 5790100 59174 6173300 6577800 7807300 4857000 4272300 4307400 4321300 4840700 3161100 5404200 381160 6295200 6267500 7773300 4999700 4523600 4425000 4218400 4653100 1 1 1 1 1 1 1 1 1 1 1 2955400 5116600 3717 5021300 2700100 2773100 3284200 3617500 3706900 3609200 4188100 2751800 4774000 244910 5095600 2603900 2982700 3313800 3635200 3769700 3525300 4025200 1 1 1 1 1 1 1 1 1 1 1 384630000 195600000 189030000 15061 1220 13805 78591;78592;78593;78594;78595 94989;94990;94991;94992 94989 4 PMFIVNTNVPR Oxidation (M) 1302.6754 0.67544174 665 P14174 MIF Macrophage migration inhibitory factor yes yes 0 0 1 0 By MS/MS By MS/MS 3.25 2.44 4 4 4 1 3 7 9 51.406 51.254 2;3 1.6375E-08 16582 20211116_3439_TMUAki_TMT10x_S_F1 148.56 118.01 26841000 46113000 100760 42558000 34751000 47166000 29045000 45709000 49022000 40389000 42574000 24991000 43015000 2244200 43736000 33171000 47732000 30378000 46388000 48769000 39665000 41270000 16 16 7 16 16 16 16 16 16 16 16 13671000 22535000 56446 20576000 22006000 34524000 17534000 22948000 25280000 20183000 21141000 12728000 21020000 1199600 21338000 20985000 34050000 18259000 23833000 25232000 19826000 20522000 7 7 3 7 7 7 7 7 7 7 7 13170000 23578000 44314 21982000 12745000 12642000 11511000 22762000 23742000 20206000 21434000 12263000 21994000 1044600 22398000 12187000 13682000 12119000 22555000 23537000 19839000 20748000 9 9 4 9 9 9 9 9 9 9 9 9033900000 5530000000 3503900000 15062 665 13806 78596;78597;78598;78599;78600;78601;78602;78603;78604;78605;78606;78607;78608;78609;78610;78611 94993;94994;94995;94996;94997;94998;94999;95000;95001;95002;95003;95004;95005;95006;95007;95008;95009;95010 95002 727 18 PMFIVNTNVPR Unmodified 1286.6805 0.68052712 665 P14174 MIF Macrophage migration inhibitory factor yes yes 0 0 0 0 By MS/MS By MS/MS 3.56 0.831 1 3 4 1 4 5 59.195 59.095 2;3 1.1692E-15 20829 20211116_3441_TMUAki_TMT10x_S_F3 202.44 159.19 35063000 53646000 146050 58867000 34428000 34087000 36468000 17396000 13930000 19054000 35068000 32645000 50077000 2648700 59315000 33046000 35879000 36186000 18579000 15908000 18541000 33175000 6 6 3 6 6 6 6 6 6 6 6 19202000 27593000 85541 30796000 21590000 23248000 22086000 8403400 7062300 9528700 18227000 17877000 25759000 1355900 31077000 20697000 23815000 21911000 9326800 8238200 9259800 17237000 3 3 1 3 3 3 3 3 3 3 3 15862000 26053000 60506 28071000 12838000 10839000 14382000 8993100 6868000 9525200 16841000 14769000 24318000 1292800 28237000 12350000 12064000 14275000 9252700 7669700 9280900 15937000 3 3 2 3 3 3 3 3 3 3 3 5283800000 2773500000 2510300000 15063 665 13806 78612;78613;78614;78615;78616;78617;78618;78619;78620 95011;95012;95013;95014;95015;95016;95017;95018;95019 95016 9 PMIHELLTEGR Oxidation (M) 1310.6653 0.66527099 1739 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 1 0 By MS/MS 5 0 1 1 42.887 42.989 3 0.0018415 11842 20211116_3433_TMUAki_TMT10x_P_F5 68.536 51.21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15064 1739 13807 78621 95020 95020 2342 1 PMPPSRR Unmodified 839.44359 0.44359131 1329;1330 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 1 By MS/MS 3 0 1 1 25.459 25.158 3 0.072872 7181 20211116_3441_TMUAki_TMT10x_S_F3 47.916 22.089 82223 142660 0 106370 163960 83089 122730 66218 86774 59426 73765 76544 132980 6258.2 110730 156060 85702 125530 67974 89389 58319 71561 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 82223 142660 0 106370 163960 83089 122730 66218 86774 59426 73765 76544 132980 6258.2 110730 156060 85702 125530 67974 89389 58319 71561 1 1 0 1 1 1 1 1 1 1 1 1783300 0 1783300 15065 1329;1330 13808 78622 95021 95021 1 PNSEPASLLELFNSIATQGELVR Unmodified 2484.286 0.28601785 782 P23381 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes yes 0 0 0 0 By MS/MS By MS/MS 6.29 1.39 1 1 2 1 2 4 3 82.648 82.654 3 6.6884E-59 27468 20211116_3436_TMUAki_TMT10x_P_F8 238.05 223.89 9591400 16753000 703880 13406000 7951400 14471000 9456800 11182000 8673900 8968700 11420000 8935800 15620000 1428200 13928000 7704600 14603000 9489500 11469000 8955900 8850500 10932000 9 9 9 9 9 9 9 9 9 9 9 6087000 10199000 431090 8016300 4090300 9747700 5217400 7148400 5422300 5477900 6905200 5670900 9508300 878460 8358000 3976400 9765100 5239700 7349200 5559900 5418800 6615300 5 5 5 5 5 5 5 5 5 5 5 3504400 6554600 272790 5389400 3861100 4723700 4239300 4033900 3251600 3490800 4514900 3265000 6111800 549760 5570400 3728200 4837700 4249800 4120000 3396000 3431700 4316300 4 4 4 4 4 4 4 4 4 4 4 692050000 438740000 253320000 15066 782 13809 78623;78624;78625;78626;78627;78628;78629 95022;95023;95024;95025;95026;95027;95028;95029;95030 95025 9 PPPQGDVTALFLGPPGLGK Unmodified 1860.0145 0.014534437 2333 Q8WZA9 IRGQ Immunity-related GTPase family Q protein yes yes 0 0 0 0 By MS/MS By MS/MS 4 3.29 2 1 2 2 3 78.539 78.52 3 2.5368E-12 25723 20211116_3428_TMUAki_TMT10x_P_F1 126.88 108.97 10422000 17452000 119270 17570000 10958000 15122000 13297000 6693300 6398500 7959700 12551000 9703700 16285000 895140 17879000 10567000 15367000 13152000 7268600 7029600 7721700 11917000 3 3 2 3 3 3 3 3 3 3 3 7533000 11863000 88460 12436000 7275600 11989000 8963100 4832000 4467500 5764700 8867400 7013900 11072000 615820 12640000 7018200 12081000 8864200 5302000 4897800 5591700 8417900 2 2 1 2 2 2 2 2 2 2 2 2888600 5589000 30812 5133300 3682100 3132900 4334000 1861300 1931000 2195000 3683900 2689800 5213400 279310 5239100 3548800 3286400 4287700 1966600 2131800 2130000 3499400 1 1 1 1 1 1 1 1 1 1 1 1755300000 708940000 1046400000 15067 2333 13810 78630;78631;78632;78633;78634 95031;95032;95033 95031 3 PPVQFPNLPR Unmodified 1163.6451 0.64512789 1943 Q5TDH0;Q5TDH0-3;Q5TDH0-2 DDI2 Protein DDI1 homolog 2 yes no 0 0 0 0 By MS/MS 2 0 1 1 81.842 81.84 3 0.10607 28476 20211116_3429_TMUAki_TMT10x_P_F2 35.944 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15068 1943 13811 78635 95034 95034 1 PQTVILPGPAPWGFR Unmodified 1634.8933 0.89329709 1904 Q53GG5-2;Q53GG5-3;Q53GG5 PDLIM3 PDZ and LIM domain protein 3 yes no 0 0 0 0 By MS/MS 5 0 1 1 77.054 77.078 2 2.1394E-09 25742 20211116_3433_TMUAki_TMT10x_P_F5 110.66 82.493 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15069 1904 13812 78636 95035 95035 1 PQYQTWEEFSR Unmodified 1469.6575 0.65754307 1101 P49458;P49458-2 SRP9 Signal recognition particle 9 kDa protein yes no 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 55.624 55.68 2 1.5076E-23 18391 20211116_3430_TMUAki_TMT10x_P_F3 250.72 196.31 42099000 70974000 50848 80183000 52002000 52422000 52863000 27768000 28197000 29257000 49965000 39197000 66261000 3420900 80735000 49870000 54563000 52813000 29522000 30537000 28513000 47525000 8 8 3 8 8 8 8 8 8 8 8 24800000 40876000 15718 45669000 37600000 42923000 37876000 17580000 17986000 18632000 29499000 23090000 38160000 2078800 46210000 36049000 43327000 37789000 19184000 19577000 18154000 28100000 5 5 2 5 5 5 5 5 5 5 5 17299000 30098000 35130 34515000 14402000 9499900 14987000 10188000 10210000 10625000 20466000 16106000 28102000 1342100 34525000 13821000 11236000 15023000 10337000 10960000 10359000 19426000 3 3 1 3 3 3 3 3 3 3 3 3709500000 2137800000 1571700000 15070 1101 13813 78637;78638;78639;78640;78641 95036;95037;95038;95039;95040;95041;95042;95043 95036 8 PRFCLLSK Carbamidomethyl (C) 1076.5801 0.5800848 2108 Q86UT5;Q86UT5-5;Q86UT5-4;Q86UT5-3;Q86UT5-2 PDZD3 Na(+)/H(+) exchange regulatory cofactor NHE-RF4 yes no 0 1 0 1 By MS/MS 2 0 1 1 64.694 64.461 2 0.060652 20219 20211116_3440_TMUAki_TMT10x_S_F2 59.8 6.6296 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15071 2108 13814 78642 95044 95044 16 1 PSETPQAEVGPTGCPHR Unmodified 1818.8319 0.8318954 598 P35520;P0DN79;P35520-2 CBS Cystathionine beta-synthase yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 30.908 30.812 3 3.1642E-51 9315 20211116_3441_TMUAki_TMT10x_S_F3 232.2 204.23 147180 236100 60.379 282890 421770 353600 203130 182320 190570 161170 218440 137040 220490 16085 286350 398920 352020 217080 193380 195410 158280 209860 2 2 1 2 2 2 2 2 2 2 2 147180 236100 60.379 282890 421770 353600 203130 182320 190570 161170 218440 137040 220490 16085 286350 398920 352020 217080 193380 195410 158280 209860 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 66553000 66553000 0 15072 598 13815 78643;78644;78645 95045;95046;95047 95047 3 PSKGPLQSVQVFGR Unmodified 1498.8256 0.82561145 1340 P62249 RPS16 40S ribosomal protein S16 yes yes 0 0 0 1 By MS/MS By MS/MS 4 0.894 2 1 2 3 2 49.362 49.38 3 6.1524E-14 16926 20211116_3441_TMUAki_TMT10x_S_F3 149.22 138.27 19130000 37580000 347190 30513000 42125000 61574000 34685000 57219000 56106000 43556000 42466000 17814000 35040000 2177500 32092000 40222000 60714000 36235000 57987000 55657000 43102000 41387000 8 8 7 8 8 8 8 8 8 8 8 13181000 25877000 294020 21003000 34854000 54316000 29570000 38209000 38348000 29817000 28958000 12275000 24127000 1670400 22269000 33304000 52916000 30542000 39410000 38295000 29466000 28225000 5 5 5 5 5 5 5 5 5 5 5 5948700 11703000 53164 9510700 7271200 7258700 5115500 19010000 17759000 13739000 13508000 5538800 10912000 507110 9823700 6917500 7797700 5693000 18577000 17362000 13636000 13162000 3 3 2 3 3 3 3 3 3 3 3 2346800000 1831900000 514930000 15073 1340 13816 78646;78647;78648;78649;78650 95048;95049;95050;95051;95052;95053;95054;95055 95053 8 PSNPLEK Unmodified 783.41267 0.41266834 944 P35813;P35813-3;P35813-2 PPM1A Protein phosphatase 1A yes no 0 0 0 0 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 59.663 59.914 2 0.050363 17534 20211116_3434_TMUAki_TMT10x_P_F6 68.915 20.411 76451000 115490000 453940 133230000 132380000 113510000 81010000 79624000 84254000 76648000 100250000 71184000 107830000 7187800 134370000 125640000 116090000 84959000 82577000 86140000 74981000 96208000 7 7 4 7 7 7 7 7 7 7 7 42119000 61392000 243990 72182000 96386000 85210000 46743000 42240000 46118000 41937000 54144000 39216000 57325000 4235500 73070000 91170000 85037000 49990000 45106000 47230000 40970000 51982000 4 4 2 4 4 4 4 4 4 4 4 34333000 54095000 209950 61044000 35994000 28295000 34267000 37384000 38136000 34711000 46101000 31968000 50503000 2952400 61295000 34474000 31050000 34968000 37471000 38910000 34010000 44226000 3 3 2 3 3 3 3 3 3 3 3 5789000000 3074000000 2715000000 15074 944 13817 78651;78652;78653;78654;78655;78656 95056;95057;95058;95059;95060;95061;95062 95057 7 PSPLLVGR Unmodified 837.50724 0.50723743 1616;3188 Q13283;Q13283-2;Q9UN86;Q9UN86-2 G3BP1;G3BP2 Ras GTPase-activating protein-binding protein 1;Ras GTPase-activating protein-binding protein 2 no no 0 0 0 0 By MS/MS By MS/MS 4.86 3.09 2 1 2 2 3 4 42.547 42.709 2 0.00079754 13058 20211116_3439_TMUAki_TMT10x_S_F1 133.79 78.287 19173000 30997000 10978 33585000 22542000 20200000 18702000 13525000 14760000 13302000 22468000 17850000 28933000 1421700 33879000 21504000 21254000 19049000 14081000 15461000 13001000 21436000 9 9 3 9 9 9 9 9 9 9 9 10134000 15772000 0 17179000 15961000 14480000 10145000 6133200 7101400 6436900 11606000 9433900 14722000 730280 17386000 15145000 14730000 10500000 6666100 7517500 6274100 11057000 3 3 0 3 3 3 3 3 3 3 3 9039300 15224000 10978 16406000 6581000 5720400 8556900 7391700 7658200 6865400 10862000 8416300 14210000 691470 16493000 6358300 6524200 8548500 7415300 7943900 6726800 10379000 6 6 3 6 6 6 6 6 6 6 6 1223000000 723700000 499270000 15075 1616;3188 13818 78657;78658;78659;78660;78661;78662;78663 95063;95064;95065;95066;95067;95068;95069;95070;95071 95066 9 PSQGMTAADDFFQGTR Oxidation (M) 1743.7522 0.75224809 1691 Q14194-2;Q14194 CRMP1 Dihydropyrimidinase-related protein 1 yes no 0 0 1 0 By MS/MS 4.5 0.5 1 1 2 50.125 50.257 3 1.4473E-05 14897 20211116_3442_TMUAki_TMT10x_S_F4 94.882 88.265 1986200 3438400 0 3932800 1969000 1771400 2004900 2539400 2729200 2456800 2795400 1849300 3210200 152390 3944800 1888100 1955100 2054200 2540600 2747100 2402900 2694600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1986200 3438400 0 3932800 1969000 1771400 2004900 2539400 2729200 2456800 2795400 1849300 3210200 152390 3944800 1888100 1955100 2054200 2540600 2747100 2402900 2694600 1 1 0 1 1 1 1 1 1 1 1 240870000 0 240870000 15076 1691 13819 78664;78665 95072;95073 95072 2265 2 PSSLLGAAMPASTSAAALQEALENAGR Oxidation (M) 2599.2912 0.29117958 354 O75694 NUP155 Nuclear pore complex protein Nup155 yes yes 0 0 1 0 By matching By MS/MS 8 0 2 1 1 78.352 78.334 3 1.031E-05 25153 20211116_3447_TMUAki_TMT10x_S_F8 63.901 58.321 2981700 5435600 0 4798700 3654400 3470500 3484100 3483800 3154600 3393000 3598400 2775500 5069600 162120 4920600 3493600 3617800 3532800 3538700 3239400 3317500 3457500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2981700 5435600 0 4798700 3654400 3470500 3484100 3483800 3154600 3393000 3598400 2775500 5069600 162120 4920600 3493600 3617800 3532800 3538700 3239400 3317500 3457500 1 1 0 1 1 1 1 1 1 1 1 1339700000 712330000 627320000 15077 354 13820 78666;78667 95074 95074 274 1 PSTLIQTPTVLPTSK Unmodified 1581.8978 0.89777334 4 A0A1B0GUW6 yes yes 0 0 0 0 By MS/MS 8 0 1 1 47.025 47.144 3 0.088397 12953 20211116_3436_TMUAki_TMT10x_P_F8 28.089 4.3399 3350700 5159700 92340 6028700 7131500 6571300 4063900 3565800 3498600 3153300 4268900 3120500 4817800 416810 6097000 6766500 6593400 4265100 3764800 3611300 3096700 4094200 1 1 1 1 1 1 1 1 1 1 1 3350700 5159700 92340 6028700 7131500 6571300 4063900 3565800 3498600 3153300 4268900 3120500 4817800 416810 6097000 6766500 6593400 4265100 3764800 3611300 3096700 4094200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 249670000 249670000 0 15078 4 13821 78668 95075 95075 1 PSWLTPVPDSHK Unmodified 1362.6932 0.6932003 1742 Q14997 PSME4 Proteasome activator complex subunit 4 yes yes 0 0 0 0 By MS/MS 5 0 2 2 32.172 32.112 3;4 0.041192 7564 20211116_3433_TMUAki_TMT10x_P_F5 41.54 12.469 5214700 4757100 59451 4109500 3515400 4421100 3147400 2314600 2711900 2427900 8306400 4855800 4436400 463940 4242800 3365100 4437400 3198300 2463000 2976500 2366600 7839700 2 2 2 2 2 2 2 2 2 2 2 5214700 4757100 59451 4109500 3515400 4421100 3147400 2314600 2711900 2427900 8306400 4855800 4436400 463940 4242800 3365100 4437400 3198300 2463000 2976500 2366600 7839700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 269020000 269020000 0 15079 1742 13822 78669;78670 95076;95077 95077 2 PTVEELYR Unmodified 1005.5131 0.51311067 2744 Q9BZZ5-2;Q9BZZ5;Q9BZZ5-3;Q9BZZ5-5 API5 Apoptosis inhibitor 5 yes no 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 44.361 44.305 2 0.0016326 12500 20211116_3442_TMUAki_TMT10x_S_F4 119.41 94.234 16182000 25485000 143130 31302000 28127000 26582000 18164000 23112000 25765000 18846000 24433000 15067000 23802000 1598800 31452000 26725000 27293000 19181000 23547000 25831000 18582000 23611000 6 6 2 6 6 6 6 6 6 6 6 9374100 13602000 110340 16458000 21866000 21194000 12082000 12240000 13681000 10031000 12456000 8728700 12703000 1018200 16659000 20725000 21098000 12817000 12830000 13805000 9887700 12054000 3 3 1 3 3 3 3 3 3 3 3 6807500 11882000 32790 14844000 6260500 5387800 6082100 10873000 12084000 8815000 11977000 6338600 11099000 580600 14793000 5999900 6195300 6364500 10716000 12027000 8693900 11557000 3 3 1 3 3 3 3 3 3 3 3 816630000 543760000 272860000 15080 2744 13823 78671;78672;78673;78674;78675 95078;95079;95080;95081;95082;95083 95083 6 PTVSVKR Unmodified 785.47594 0.4759373 2941 Q9NSD9 FARSB Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 29.538 29.488 3 0.0016656 7698 20211116_3439_TMUAki_TMT10x_S_F1 120.92 57.615 1114300 1857700 7673.3 1560500 1125800 1631100 1352900 916120 1114000 975890 1376200 1037600 1732300 96888 1614100 1085400 1641300 1353000 969320 1153100 950650 1319500 3 3 2 3 3 3 3 3 3 3 3 825170 1336200 2844.7 1129700 781980 1335700 987020 649090 818450 711580 999080 768310 1246000 67650 1170200 754940 1332600 985230 696470 846410 692390 958180 2 2 1 2 2 2 2 2 2 2 2 289160 521520 4828.6 430810 343790 295390 365880 267040 295570 264320 377170 269270 486300 29238 443880 330490 308640 367800 272860 306670 258260 361320 1 1 1 1 1 1 1 1 1 1 1 28853000 21143000 7710500 15081 2941 13824 78676;78677;78678 95084;95085;95086 95086 3 PTWGNHTPIFR Unmodified 1324.6677 0.66765425 471 P00505;P00505-2 GOT2 Aspartate aminotransferase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 2 3 44.045 43.888 3 2.7041E-16 13445 20211116_3430_TMUAki_TMT10x_P_F3 208.63 164.32 5689500 9249300 25426 11736000 8812000 6435200 6391700 4943500 5037200 4629600 7658500 5297600 8639900 531400 11718000 8389600 6849200 6568000 5092100 5276800 4534500 7306700 5 5 2 5 5 5 5 5 5 5 5 2367700 3708900 13572 5183700 5884200 4284100 3684700 1654000 1747300 1690000 3071400 2204600 3466300 252450 5170600 5587200 4360700 3792600 1815500 1909400 1649000 2921900 2 2 1 2 2 2 2 2 2 2 2 3321800 5540400 11854 6552600 2927800 2151100 2706900 3289500 3289900 2939700 4587100 3093000 5173600 278950 6547400 2802300 2488500 2775400 3276700 3367400 2885500 4384800 3 3 1 3 3 3 3 3 3 3 3 1104400000 651290000 453160000 15082 471 13825 78679;78680;78681;78682;78683 95087;95088;95089;95090 95088 4 PVAGSELPR Unmodified 924.50288 0.50288033 493 P04818;P04818-2;P04818-3 TYMS Thymidylate synthase yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 34.945 34.837 2 3.0737E-05 10925 20211116_3441_TMUAki_TMT10x_S_F3 109.01 92.086 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15083 493 13826 78684;78685 95091;95092 95092 2 PVAVMAESAFSFKK Oxidation (M) 1526.7803 0.78030075 2594 Q99627 COPS8 COP9 signalosome complex subunit 8 yes yes 0 0 1 1 By MS/MS 2 0 1 1 57.911 57.69 3 0.01979 17475 20211116_3440_TMUAki_TMT10x_S_F2 45.992 33.632 5155100 8478800 38453 7545900 5460100 4990600 4112200 9219500 7892600 6953600 7793100 4800200 7908100 467510 7725800 5203900 5336800 4358700 9092500 7860400 6884600 7520800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5155100 8478800 38453 7545900 5460100 4990600 4112200 9219500 7892600 6953600 7793100 4800200 7908100 467510 7725800 5203900 5336800 4358700 9092500 7860400 6884600 7520800 1 1 1 1 1 1 1 1 1 1 1 497860000 0 497860000 15084 2594 13827 78686 95093 95093 2829 1 PVIVEPLEQLDDEDGLPEK Unmodified 2134.0681 0.06814573 777 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 77.916 77.89 3 2.8251E-06 27356 20211116_3439_TMUAki_TMT10x_S_F1 90.654 75.262 5417500 10034000 71075 9256400 5925400 7662700 7305600 5351300 4722400 6144600 7341900 5044600 9360000 507620 9474100 5719600 7852600 7258200 5581200 5010200 5968400 7001300 2 2 1 2 2 2 2 2 2 2 2 2313900 3979100 0 3576300 2159300 4058300 2901400 2358800 2266400 2757600 2967800 2154300 3711400 174790 3684100 2088100 4066400 2884600 2495900 2358400 2676800 2841200 1 1 0 1 1 1 1 1 1 1 1 3103700 6055100 71075 5680000 3766100 3604400 4404100 2992500 2455900 3387000 4374100 2890300 5648700 332830 5790000 3631500 3786200 4373600 3085300 2651800 3291600 4160100 1 1 1 1 1 1 1 1 1 1 1 1988900000 1089700000 899130000 15085 777 13828 78687;78688 95094;95095 95095 2 PVLNFYEANFPANVMDVIAR Unmodified 2279.1409 0.14087394 710 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 yes yes 0 0 0 0 By MS/MS By matching 2 0 2 1 1 81.647 81.638 3 0.06113 28436 20211116_3429_TMUAki_TMT10x_P_F2 32.695 15.414 1674200 2579500 44980 2390600 1117600 2715100 2031800 1655300 2230700 2435500 2115800 1559200 2406200 172930 2457000 1097300 2722100 2019300 1759800 2256600 2346500 2044600 1 1 1 1 1 1 1 1 1 1 1 1674200 2579500 44980 2390600 1117600 2715100 2031800 1655300 2230700 2435500 2115800 1559200 2406200 172930 2457000 1097300 2722100 2019300 1759800 2256600 2346500 2044600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 565360000 370630000 194730000 15086 710 13829 78689;78690 95096 95096 1 PYQYPALTPEQK Unmodified 1433.7191 0.7190807 482 P04075 ALDOA Fructose-bisphosphate aldolase A yes yes 0 0 0 0 By MS/MS By MS/MS 5.89 0.737 3 4 2 4 5 52.379 52.641 2;3 2.7545E-19 14474 20211116_3434_TMUAki_TMT10x_P_F6 223.87 197.75 26037000 41777000 146030 52713000 44675000 42134000 30075000 32808000 37356000 29016000 37969000 24244000 39024000 2547900 52845000 42478000 43366000 31495000 33714000 37706000 28495000 36609000 8 8 6 8 8 8 8 8 8 8 8 14686000 22317000 128090 28064000 36436000 34029000 21431000 17808000 19990000 15605000 20279000 13675000 20846000 1635100 28313000 34567000 33934000 22479000 18859000 20410000 15331000 19554000 5 5 4 5 5 5 5 5 5 5 5 11351000 19460000 17933 24649000 8239000 8104700 8643600 15000000 17366000 13411000 17690000 10569000 18178000 912840 24532000 7911100 9431900 9016400 14855000 17297000 13163000 17055000 3 3 2 3 3 3 3 3 3 3 3 2973300000 1917100000 1056200000 15087 482 13830 78691;78692;78693;78694;78695;78696;78697;78698;78699 95097;95098;95099;95100;95101;95102;95103;95104;95105;95106 95098 10 PYQYPALTPEQKK Unmodified 1561.814 0.81404372 482 P04075 ALDOA Fructose-bisphosphate aldolase A yes yes 0 0 0 1 By MS/MS By MS/MS 7.57 0.495 3 4 4 3 46.548 46.791 3;4 1.8725E-14 12237 20211116_3447_TMUAki_TMT10x_S_F8 161.21 142.37 28080000 45833000 520940 65500000 58275000 43326000 32145000 40861000 53873000 28457000 47497000 26149000 42841000 3169500 65100000 55247000 45450000 34645000 41298000 53630000 28304000 46016000 12 12 9 12 12 12 12 12 12 12 12 11683000 19305000 127660 27405000 45012000 32983000 19562000 16438000 22810000 11558000 18924000 10878000 18044000 1522900 27469000 42526000 32885000 21274000 17402000 22925000 11490000 18376000 5 5 4 5 5 5 5 5 5 5 5 16398000 26528000 393280 38095000 13263000 10343000 12583000 24423000 31063000 16899000 28573000 15271000 24797000 1646600 37631000 12721000 12565000 13371000 23895000 30704000 16814000 27640000 7 7 5 7 7 7 7 7 7 7 7 4064700000 2900400000 1164200000 15088 482 13831 78700;78701;78702;78703;78704;78705;78706 95107;95108;95109;95110;95111;95112;95113;95114;95115;95116;95117;95118 95114 12 QAADMILLDDNFASIVTGVEEGR Oxidation (M) 2479.1901 0.19006855 497 P05023;P05023-3;P05023-4;P13637;P13637-2;P13637-3;P50993;Q13733 ATP1A1;ATP1A3;ATP1A2;ATP1A4 Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4 yes no 0 0 1 0 By MS/MS By matching 1 0 2 1 1 80.54 80.525 3 2.9811E-16 26506 20211116_3428_TMUAki_TMT10x_P_F1 138.93 107.13 1316000 2044000 70513 2302100 1082800 2275600 1465700 1340300 1398600 1421100 1704900 1225800 1908300 171550 2329900 1052100 2298800 1464600 1412400 1436600 1384600 1635200 1 1 1 1 1 1 1 1 1 1 1 1316000 2044000 70513 2302100 1082800 2275600 1465700 1340300 1398600 1421100 1704900 1225800 1908300 171550 2329900 1052100 2298800 1464600 1412400 1436600 1384600 1635200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 889960000 703760000 186200000 15089 497 13832 78707;78708 95119 95119 401 1 QAAPCVLFFDELDSIAK Unmodified 1922.9448 0.94479989 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 By MS/MS By MS/MS 4.38 1.91 3 4 11 5 9 6 4 3 23 22 76.758 76.741 2;3 5.8501E-53 26521 20211116_3445_TMUAki_TMT10x_S_F6 271.04 236.66 191050000 307710000 1611200 287230000 236570000 272520000 250660000 171800000 163640000 187950000 226150000 177890000 287050000 16736000 294250000 227250000 276270000 250820000 180240000 172500000 182900000 216230000 46 46 30 46 46 46 46 46 46 46 46 86301000 132780000 769550 125220000 79758000 144860000 96158000 78260000 71753000 83506000 99885000 80360000 123870000 6951400 128570000 76926000 144860000 95924000 83087000 75063000 81341000 95484000 17 17 12 17 17 17 17 17 17 17 17 104750000 174930000 841690 162020000 156810000 127670000 154500000 93543000 91885000 104450000 126270000 97535000 163180000 9784500 165680000 150320000 131410000 154900000 97156000 97437000 101560000 120740000 29 29 18 29 29 29 29 29 29 29 29 54205000000 25044000000 29161000000 15090 1235 13833 78709;78710;78711;78712;78713;78714;78715;78716;78717;78718;78719;78720;78721;78722;78723;78724;78725;78726;78727;78728;78729;78730;78731;78732;78733;78734;78735;78736;78737;78738;78739;78740;78741;78742;78743;78744;78745;78746;78747;78748;78749;78750;78751;78752;78753 95120;95121;95122;95123;95124;95125;95126;95127;95128;95129;95130;95131;95132;95133;95134;95135;95136;95137;95138;95139;95140;95141;95142;95143;95144;95145;95146;95147;95148;95149;95150;95151;95152;95153;95154;95155;95156;95157;95158;95159;95160;95161;95162;95163;95164;95165;95166;95167;95168;95169;95170;95171;95172;95173;95174;95175;95176 95172 57 QAAPPIELDAVWEDIRER Unmodified 2107.0698 0.069817485 332 O75400;O75400-2;O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 75.2 75.146 3 2.1023E-17 25872 20211116_3429_TMUAki_TMT10x_P_F2 150.45 132.65 1859300 3145000 0 2840700 1973700 3301800 2369000 1466400 1607900 1790100 2070600 1731200 2933400 151480 2926400 1902200 3294000 2358700 1593200 1685500 1735000 1983100 1 1 0 1 1 1 1 1 1 1 1 1859300 3145000 0 2840700 1973700 3301800 2369000 1466400 1607900 1790100 2070600 1731200 2933400 151480 2926400 1902200 3294000 2358700 1593200 1685500 1735000 1983100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 597320000 597320000 0 15091 332 13834 78754;78755 95177 95177 1 QAASSLQQASLK Unmodified 1230.6568 0.65681479 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 38.612 39.05 3 0.0023838 10876 20211116_3435_TMUAki_TMT10x_P_F7 65.295 40.44 585830 1045300 0 1079500 1393600 1541500 870050 866300 831540 776390 823690 545430 975520 54804 1105800 1322800 1526700 908720 912180 847360 761960 794830 1 1 0 1 1 1 1 1 1 1 1 585830 1045300 0 1079500 1393600 1541500 870050 866300 831540 776390 823690 545430 975520 54804 1105800 1322800 1526700 908720 912180 847360 761960 794830 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 56427000 56427000 0 15092 972 13835 78756;78757 95178;95179 95179 2 QACTPMFR Unmodified 1009.4474 0.44735606 915 P34897;P34897-3;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 0 By MS/MS 7 0 1 1 33.23 33.637 2 0.10055 8599 20211116_3435_TMUAki_TMT10x_P_F7 48.157 34.163 53873 82516 0 114760 161260 103260 79132 47299 54037 35709 73261 50152 77117 4815 114630 152480 104650 83784 50567 56754 35353 70077 1 1 0 1 1 1 1 1 1 1 1 53873 82516 0 114760 161260 103260 79132 47299 54037 35709 73261 50152 77117 4815 114630 152480 104650 83784 50567 56754 35353 70077 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4995600 4995600 0 15093 915 13836 78758 95180 95180 1 QADFEAHNILR Unmodified 1312.6524 0.65239812 1128 P49915;P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 0 0 By MS/MS By MS/MS 3.6 1.02 1 1 2 1 2 3 38.899 38.857 3 1.998E-08 10074 20211116_3431_TMUAki_TMT10x_P_F4 146.07 95.876 5256900 8185000 47152 9160700 7060600 6176900 5281300 5343800 5404300 4836900 6689200 4894400 7641100 424080 9231900 6722900 6457900 5453800 5460100 5538200 4744900 6413000 7 7 3 7 7 7 7 7 7 7 7 1678900 2607500 0 2880000 3853800 3248500 1952900 1783300 1807900 1375300 2120700 1562800 2434100 118300 2924300 3644000 3253700 2075800 1874800 1856700 1360000 2036100 1 1 0 1 1 1 1 1 1 1 1 3578000 5577500 47152 6280700 3206900 2928400 3328300 3560500 3596400 3461700 4568400 3331600 5207000 305780 6307600 3078900 3204200 3378000 3585200 3681500 3384900 4376900 6 6 3 6 6 6 6 6 6 6 6 512320000 308430000 203890000 15094 1128 13837 78759;78760;78761;78762;78763 95181;95182;95183;95184;95185;95186;95187 95181 7 QADFVQTPITGIFGGHIR Unmodified 1956.0217 0.02174508 1729 Q14694;Q14694-3;Q14694-2 USP10 Ubiquitin carboxyl-terminal hydrolase 10 yes no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 67.548 67.407 3 2.109E-06 21436 20211116_3440_TMUAki_TMT10x_S_F2 97.284 80.619 10631000 16304000 12607 15056000 12368000 15384000 12791000 15289000 11550000 13866000 14123000 9897700 15209000 827770 15452000 11865000 15650000 12914000 15507000 11896000 13601000 13544000 4 4 1 4 4 4 4 4 4 4 4 3557900 4957200 0 4564000 3494200 6927200 4803700 4783300 3445300 4754100 4288000 3312200 4624200 223080 4719200 3378700 6863100 4762100 4970700 3594300 4644300 4110400 1 1 0 1 1 1 1 1 1 1 1 7072900 11347000 12607 10492000 8873800 8457100 7987400 10506000 8104500 9111500 9835200 6585500 10585000 604690 10733000 8485800 8787100 8152000 10536000 8301300 8956200 9434100 3 3 1 3 3 3 3 3 3 3 3 1690800000 800740000 890090000 15095 1729 13838 78764;78765;78766 95188;95189;95190;95191 95191 4 QADLYISEGLHPR Unmodified 1497.7576 0.75759147 982 P40227;Q92526;Q92526-3 CCT6A;CCT6B T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2 yes no 0 0 0 0 By MS/MS By MS/MS 4.08 1.82 1 2 2 3 2 1 2 7 6 44.179 44.278 2;3 3.0081E-19 12371 20211116_3442_TMUAki_TMT10x_S_F4 184.21 161.89 24361000 40224000 293920 45225000 36860000 41129000 27065000 37174000 37676000 30599000 34802000 22684000 37552000 2356300 45723000 35107000 42063000 28294000 37799000 37763000 30156000 33661000 16 16 11 16 16 16 16 16 16 16 16 14656000 23771000 193470 26860000 28170000 33834000 19059000 23217000 24235000 18882000 21271000 13647000 22193000 1515900 27287000 26789000 33799000 19969000 24011000 24323000 18620000 20611000 9 9 6 9 9 9 9 9 9 9 9 9705000 16453000 100450 18366000 8690200 7294700 8006200 13957000 13441000 11717000 13530000 9036700 15359000 840480 18435000 8318600 8263900 8325100 13787000 13440000 11536000 13050000 7 7 5 7 7 7 7 7 7 7 7 6572200000 3681200000 2891100000 15096 982 13839 78767;78768;78769;78770;78771;78772;78773;78774;78775;78776;78777;78778;78779 95192;95193;95194;95195;95196;95197;95198;95199;95200;95201;95202;95203;95204;95205;95206;95207;95208 95204 17 QADYVPSDQDLLR Unmodified 1518.7314 0.7314363 1393 P63092;Q5JWF2;P63092-4;Q5JWF2-2;P63092-3;P63092-2 GNAS Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas yes no 0 0 0 0 By MS/MS By MS/MS 2.71 1.03 1 2 2 2 4 3 52.12 51.892 2 8.192E-65 17896 20211116_3441_TMUAki_TMT10x_S_F3 318.79 275.35 8223900 13743000 3221.1 16686000 13275000 16069000 9032800 15345000 15977000 12796000 13036000 7656300 12835000 633310 16805000 12614000 16392000 9599200 15562000 15846000 12602000 12667000 6 6 1 6 6 6 6 6 6 6 6 4382700 6986300 0 8422500 10032000 12720000 6754300 7815900 8028600 6588000 6578400 4080200 6524300 375840 8555100 9532200 12583000 7062000 8157400 8060500 6484800 6390900 3 3 0 3 3 3 3 3 3 3 3 3841200 6756600 3221.1 8263100 3242700 3348700 2278600 7529000 7948700 6207700 6457800 3576100 6310200 257460 8249800 3081600 3808500 2537200 7404500 7785400 6117200 6275800 3 3 1 3 3 3 3 3 3 3 3 959910000 625030000 334880000 15097 1393 13840 78780;78781;78782;78783;78784;78785;78786 95209;95210;95211;95212;95213;95214;95215;95216;95217 95216 9 QAEAFLNNQEYVLAHTEMPTTLEGAEAAIK Oxidation (M) 3304.5922 0.59217221 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 1 0 By MS/MS 3 0.816 1 1 1 3 74.373 74.283 4 0.0016893 24354 20211116_3431_TMUAki_TMT10x_P_F4 50.908 43.796 2159100 2985100 70770 3139400 1915600 3482400 2368400 2079400 2250300 2168700 2167500 2010900 2785900 241550 3196900 1852400 3495000 2375100 2187700 2291500 2114400 2093400 1 1 1 1 1 1 1 1 1 1 1 2159100 2985100 70770 3139400 1915600 3482400 2368400 2079400 2250300 2168700 2167500 2010900 2785900 241550 3196900 1852400 3495000 2375100 2187700 2291500 2114400 2093400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 891140000 891140000 0 15098 1475 13841 78787;78788;78789 95218 95218 2000 1 QAEILQESR Unmodified 1072.5513 0.55128709 323 O75347;O75347-2 TBCA Tubulin-specific chaperone A yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 34.172 33.941 2 6.4572E-06 9077 20211116_3429_TMUAki_TMT10x_P_F2 178.32 121.6 1214800 1938000 2064.2 1984000 2225300 1945600 1448600 1260700 1313600 1084400 1613400 1131100 1808500 112760 2020200 2114000 1969000 1505800 1311100 1352900 1066400 1547100 2 2 1 2 2 2 2 2 2 2 2 737140 1139000 0 1230600 1657900 1416400 896390 755750 808070 625230 972160 686320 1063100 69982 1251700 1570300 1416600 946330 797820 831760 616010 932730 1 1 0 1 1 1 1 1 1 1 1 477640 799010 2064.2 753440 567340 529220 552240 504940 505500 459210 641220 444750 745390 42780 768500 543740 552420 559510 513250 521120 450370 614360 1 1 1 1 1 1 1 1 1 1 1 60122000 43972000 16150000 15099 323 13842 78790;78791 95219;95220 95219 2 QAELAIER Unmodified 928.49779 0.49779495 2667 Q9BTU6 PI4K2A Phosphatidylinositol 4-kinase type 2-alpha yes yes 0 0 0 0 By MS/MS 2 0 1 1 32.18 32.246 2 0.029209 7093 20211116_3440_TMUAki_TMT10x_S_F2 63.216 16.134 39402 70277 0 78434 48802 47092 54816 38964 47050 43937 53024 36684 65606 2963.2 78971 46916 49725 55048 40175 48417 42706 50965 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39402 70277 0 78434 48802 47092 54816 38964 47050 43937 53024 36684 65606 2963.2 78971 46916 49725 55048 40175 48417 42706 50965 1 1 0 1 1 1 1 1 1 1 1 2280000 0 2280000 15100 2667 13843 78792 95221 95221 1 QAELEEGRPQHQEQLR Unmodified 1946.9559 0.95585036 92 O00461 GOLIM4 Golgi integral membrane protein 4 yes yes 0 0 0 1 By MS/MS 2 0 1 1 28.292 28.055 4 2.1218E-07 6823 20211116_3429_TMUAki_TMT10x_P_F2 112.16 95.475 67314 101860 999.9 93150 110090 170310 79888 58265 98785 72196 96804 62683 95011 7111.7 96797 104860 166230 83198 65311 99599 69936 93445 1 1 1 1 1 1 1 1 1 1 1 67314 101860 999.9 93150 110090 170310 79888 58265 98785 72196 96804 62683 95011 7111.7 96797 104860 166230 83198 65311 99599 69936 93445 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4719200 4719200 0 15101 92 13844 78793 95222 95222 1 QAEVANQETKEDLPAENGETKTEESPASDEAGEK Unmodified 3630.6293 0.62928182 501 P05114 HMGN1 Non-histone chromosomal protein HMG-14 yes yes 0 0 0 2 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 42.295 42.141 5 1.3344E-39 12879 20211116_3439_TMUAki_TMT10x_S_F1 177.78 168.64 459410 708290 0 1922900 3128300 1894000 955470 1155000 2289200 598710 1421800 427690 665450 68126 1875500 2944400 1914700 1124100 1195000 2239700 607650 1398400 2 2 0 2 2 2 2 2 2 2 2 271280 419880 0 1039200 2997800 1796200 829840 707440 1354600 373020 788770 252540 394110 55288 1027700 2819600 1758700 971350 764210 1335000 378090 778420 1 1 0 1 1 1 1 1 1 1 1 188130 288410 0 883720 130410 97841 125640 447570 934630 225690 632980 175150 271340 12837 847740 124800 156010 152730 430770 904720 229560 619950 1 1 0 1 1 1 1 1 1 1 1 521460000 433070000 88390000 15102 501 13845 78794;78795;78796 95223;95224 95224 2 QAFDDAIAELDTLNEDSYK Unmodified 2156.975 0.97497363 1515 Q04917 YWHAH 14-3-3 protein eta yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 3 1 2 80.226 80.202 2;3 3.2068E-33 26372 20211116_3428_TMUAki_TMT10x_P_F1 199.01 183.92 12517000 18214000 9296.9 25148000 10673000 11091000 13334000 5870900 5754000 6941300 11837000 11655000 17021000 546040 24955000 10301000 12048000 13152000 6264600 6401200 6735100 11230000 3 3 1 3 3 3 3 3 3 3 3 5300500 7947700 9296.9 11341000 3792000 5483800 4136400 2421700 2807800 3127100 4742100 4935300 7428700 426980 11243000 3645200 5879100 4136500 2637800 2983200 3025000 4514600 1 1 1 1 1 1 1 1 1 1 1 7216500 10266000 0 13807000 6880900 5606900 9197800 3449200 2946200 3814200 7094500 6719200 9592500 119060 13712000 6655400 6169200 9015100 3626800 3418000 3710100 6715400 2 2 0 2 2 2 2 2 2 2 2 2511400000 1372000000 1139400000 15103 1515 13846 78797;78798;78799 95225;95226;95227 95225 3 QAFNATAVVR Unmodified 1075.5774 0.57744226 1674 Q8IU85;Q14012;Q8IU85-2 CAMK1D;CAMK1 Calcium/calmodulin-dependent protein kinase type 1D;Calcium/calmodulin-dependent protein kinase type 1 yes no 0 0 0 0 By MS/MS 8 0 1 1 38.663 39.006 2 0.0061892 9022 20211116_3447_TMUAki_TMT10x_S_F8 74.6 56.222 265140 442850 0 492410 266380 260510 226050 453990 400410 353780 417120 246860 413410 20410 495370 254300 284050 236800 448820 400310 349650 401860 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 265140 442850 0 492410 266380 260510 226050 453990 400410 353780 417120 246860 413410 20410 495370 254300 284050 236800 448820 400310 349650 401860 1 1 0 1 1 1 1 1 1 1 1 10755000 0 10755000 15104 1674 13847 78800 95228 95228 1 QAFPNTNR Unmodified 946.46208 0.46207815 821 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 By MS/MS 5 0 1 1 30.156 30.089 2 0.0099143 6726 20211116_3433_TMUAki_TMT10x_P_F5 81.215 63.306 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15105 821 13848 78801 95229 95229 1 QAFTDVATGSLGQGLGAACGMAYTGK Oxidation (M) 2547.1734 0.17337263 853 P29401;P29401-2 TKT Transketolase yes no 0 0 1 0 By MS/MS 8 0 1 1 68.434 68.536 3 1.2616E-05 21672 20211116_3436_TMUAki_TMT10x_P_F8 66.633 50.691 3212600 5341100 46526 5306500 3106200 6211700 3349800 3099200 2927900 3334400 3981800 2991500 4983700 292280 5429500 2986300 6202300 3372000 3315200 3034500 3246800 3808500 2 2 1 2 2 2 2 2 2 2 2 3212600 5341100 46526 5306500 3106200 6211700 3349800 3099200 2927900 3334400 3981800 2991500 4983700 292280 5429500 2986300 6202300 3372000 3315200 3034500 3246800 3808500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 962220000 962220000 0 15106 853 13849 78802 95230;95231 95230 1022 2 QAGDFHQVIIR Unmodified 1282.6782 0.67821894 2797 Q9H3G5 CPVL Probable serine carboxypeptidase CPVL yes yes 0 0 0 0 By MS/MS 5.33 0.471 2 1 3 34.977 34.958 3 0.0034684 7306 20211116_3434_TMUAki_TMT10x_P_F6 63.662 50.154 457820 695130 4046.3 728360 814180 789180 520650 394850 420820 393480 534730 426290 648750 44954 741610 773430 791350 540380 421310 436520 384350 512310 2 2 1 2 2 2 2 2 2 2 2 457820 695130 4046.3 728360 814180 789180 520650 394850 420820 393480 534730 426290 648750 44954 741610 773430 791350 540380 421310 436520 384350 512310 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5461900 5461900 0 15107 2797 13850 78803;78804;78805 95232;95233;95234;95235 95234 4 QAGEVTFADAHRPK Unmodified 1525.7637 0.76373948 1612 Q13243;Q13243-3 SRSF5 Serine/arginine-rich splicing factor 5 yes no 0 0 0 1 By MS/MS 5 0 1 1 32.148 32.088 4 1.7788E-09 7524 20211116_3433_TMUAki_TMT10x_P_F5 134.88 118.22 657160 963380 3631.4 963640 1492300 1316300 729390 718390 831280 663240 903650 611910 898940 69564 988320 1411900 1305700 782900 758930 843790 650020 869480 1 1 1 1 1 1 1 1 1 1 1 657160 963380 3631.4 963640 1492300 1316300 729390 718390 831280 663240 903650 611910 898940 69564 988320 1411900 1305700 782900 758930 843790 650020 869480 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 153760000 153760000 0 15108 1612 13851 78806 95236 95236 1 QAGEVTYADAHK Unmodified 1288.6048 0.60477922 1613 Q13247;Q13247-3;Q08170 SRSF6;SRSF4 Serine/arginine-rich splicing factor 6;Serine/arginine-rich splicing factor 4 yes no 0 0 0 0 By MS/MS 3 0 1 1 32.07 31.825 3 1.9305E-07 9756 20211116_3441_TMUAki_TMT10x_S_F3 127.36 100.76 504990 935770 7494.1 880610 685400 512290 737340 447350 542430 467290 731430 470250 872970 51378 896750 658960 543140 739170 458710 567070 455560 699740 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 504990 935770 7494.1 880610 685400 512290 737340 447350 542430 467290 731430 470250 872970 51378 896750 658960 543140 739170 458710 567070 455560 699740 1 1 1 1 1 1 1 1 1 1 1 82496000 0 82496000 15109 1613 13852 78807 95237 95237 1 QAGGFLGPPPPSGK Unmodified 1308.6826 0.68263561 3178 Q9UM00;Q9UM00-1;Q9UM00-2 TMCO1 Transmembrane and coiled-coil domain-containing protein 1 yes no 0 0 0 0 By MS/MS 8 0 1 1 48.134 48.238 3 0.055483 13409 20211116_3436_TMUAki_TMT10x_P_F8 41.378 18.142 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15110 3178 13853 78808 95238 95238 1 QAGPASVPLRTEEEFK Unmodified 1757.8948 0.89481323 868 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 1 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 45.57 45.618 3 5.3825E-15 12944 20211116_3442_TMUAki_TMT10x_S_F4 146.67 116.1 28356000 46610000 231060 60651000 35832000 35418000 25048000 30617000 33640000 30494000 37060000 26404000 43544000 2653000 60505000 34099000 37530000 26237000 31368000 33968000 29787000 35644000 8 8 7 8 8 8 8 8 8 8 8 10747000 17582000 7330.9 22210000 22645000 23507000 14083000 12222000 13615000 11543000 13678000 10007000 16423000 1046500 22350000 21497000 23614000 14718000 12975000 13874000 11302000 13193000 3 3 2 3 3 3 3 3 3 3 3 17609000 29028000 223730 38441000 13186000 11911000 10965000 18395000 20025000 18950000 23382000 16397000 27121000 1606500 38154000 12601000 13916000 11519000 18393000 20095000 18485000 22452000 5 5 5 5 5 5 5 5 5 5 5 2729800000 1581800000 1148000000 15111 868 13854 78809;78810;78811;78812;78813;78814 95239;95240;95241;95242;95243;95244;95245;95246 95244 8 QAGPASVPLRTEEEFKK Unmodified 1885.9898 0.98977625 868 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 2 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 43.105 43.231 4 3.8656E-15 10707 20211116_3434_TMUAki_TMT10x_P_F6 146.58 131.19 31421000 51933000 240980 66323000 73711000 74983000 41614000 73453000 65279000 53852000 55972000 29255000 48513000 3118700 66774000 69866000 75819000 44621000 74173000 65045000 53402000 54282000 10 10 5 10 10 10 10 10 10 10 10 19994000 33697000 98744 42219000 64259000 65872000 34566000 48022000 42742000 34349000 36217000 18616000 31475000 2160100 42823000 60860000 65246000 36868000 49317000 42893000 34111000 35140000 6 6 3 6 6 6 6 6 6 6 6 11426000 18236000 142240 24104000 9452300 9110700 7047600 25431000 22538000 19503000 19755000 10640000 17038000 958620 23951000 9005400 10573000 7753900 24856000 22151000 19292000 19143000 4 4 2 4 4 4 4 4 4 4 4 3741000000 2636700000 1104300000 15112 868 13855 78815;78816;78817;78818;78819;78820 95247;95248;95249;95250;95251;95252;95253;95254;95255;95256 95251 10 QAGVFEPTIVK Unmodified 1187.655 0.65502388 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 2 4 3 3 54.738 54.855 2;3 9.7638E-16 15414 20211116_3434_TMUAki_TMT10x_P_F6 205.13 156.34 24122000 38666000 127510 45879000 39669000 40147000 27281000 35114000 36100000 31529000 35626000 22461000 36106000 2314500 46208000 37731000 41140000 28593000 35848000 36323000 30940000 34382000 6 6 3 6 6 6 6 6 6 6 6 12914000 20226000 127510 23970000 29605000 31880000 18744000 18417000 18252000 16320000 18824000 12025000 18887000 1423100 24307000 28121000 31687000 19566000 19341000 18611000 16025000 18141000 4 4 3 4 4 4 4 4 4 4 4 11209000 18440000 0 21908000 10063000 8267600 8536400 16698000 17847000 15209000 16802000 10436000 17220000 891430 21901000 9609500 9453300 9027000 16507000 17712000 14915000 16241000 2 2 0 2 2 2 2 2 2 2 2 2168300000 1538600000 629710000 15113 712 13856 78821;78822;78823;78824;78825;78826 95257;95258;95259;95260;95261;95262;95263;95264 95258 8 QAGVIYLK Unmodified 890.52255 0.52255314 425 O95373 IPO7 Importin-7 yes yes 0 0 0 0 By MS/MS 8 0 2 2 49.255 49.155 2 0.0019698 13246 20211116_3447_TMUAki_TMT10x_S_F8 117.02 56.868 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15114 425 13857 78827;78828 95265;95266 95265 2 QAHLCVLASNCDEPMYVK Oxidation (M) 2149.9595 0.95948045 801 P25398 RPS12 40S ribosomal protein S12 yes yes 0 0 1 0 By MS/MS By MS/MS 5.25 0.924 3 4 4 1 7 5 46.665 46.844 3;4 2.2229E-09 13070 20211116_3431_TMUAki_TMT10x_P_F4 120.63 104.5 48801000 84199000 1402000 92733000 82885000 104580000 61964000 79621000 78315000 71787000 71785000 45447000 78599000 5626500 94177000 79020000 105240000 64453000 81978000 78725000 70433000 69450000 22 22 17 22 22 22 22 22 22 22 22 30681000 51739000 1159100 56896000 65607000 86743000 46328000 48922000 48921000 44155000 43071000 28575000 48297000 3983600 58125000 62485000 85677000 48080000 51506000 49448000 43320000 41730000 13 13 10 13 13 13 13 13 13 13 13 18119000 32460000 242890 35837000 17278000 17834000 15637000 30699000 29394000 27632000 28714000 16872000 30301000 1642900 36052000 16535000 19567000 16373000 30471000 29277000 27113000 27720000 9 9 7 9 9 9 9 9 9 9 9 11894000000 6895100000 4998800000 15115 801 13858 78829;78830;78831;78832;78833;78834;78835;78836;78837;78838;78839;78840 95267;95268;95269;95270;95271;95272;95273;95274;95275;95276;95277;95278;95279;95280;95281;95282;95283;95284;95285;95286;95287;95288 95267 950 22 QAHLCVLASNCDEPMYVK Unmodified 2133.9646 0.96456583 801 P25398 RPS12 40S ribosomal protein S12 yes yes 0 0 0 0 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 51.409 51.728 3 2.7628E-31 14120 20211116_3434_TMUAki_TMT10x_P_F6 185.02 160.98 24787000 41436000 330940 45246000 33834000 32369000 28618000 17894000 14508000 18352000 28441000 23081000 38679000 2402900 45697000 32325000 33445000 28865000 18938000 15871000 17904000 27005000 11 11 6 11 11 11 11 11 11 11 11 14256000 22908000 150660 25528000 23211000 24578000 19613000 9949100 7821500 10298000 15948000 13275000 21385000 1400300 25844000 22171000 24768000 19718000 10864000 8761400 10044000 15133000 6 6 3 6 6 6 6 6 6 6 6 10531000 18528000 180290 19718000 10623000 7791400 9004800 7945100 6686000 8053300 12493000 9806800 17293000 1002600 19853000 10154000 8676500 9146800 8073500 7109400 7860800 11872000 5 5 3 5 5 5 5 5 5 5 5 4460200000 2691200000 1769000000 15116 801 13858 78841;78842;78843;78844;78845 95289;95290;95291;95292;95293;95294;95295;95296;95297;95298;95299 95292 11 QAHTMDPQLR Unmodified 1195.5768 0.57679033 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 28.482 28.327 3 0.00020068 5677 20211116_3431_TMUAki_TMT10x_P_F4 105.17 83.701 375450 633610 4422.1 563770 477350 452350 406990 283800 346010 459070 439040 349610 590970 36676 578400 456210 463900 414620 302300 357980 441130 420640 2 2 2 2 2 2 2 2 2 2 2 181400 272020 1447.8 286900 280870 265080 190770 148390 171350 224630 210620 168910 253880 17782 291310 267140 268770 197620 159040 176560 216240 201960 1 1 1 1 1 1 1 1 1 1 1 194050 361590 2974.3 276870 196480 187270 216230 135410 174660 234440 228420 180700 337090 18894 287100 189070 195140 217010 143250 181410 224890 218680 1 1 1 1 1 1 1 1 1 1 1 16907000 13176000 3730900 15117 1092 13859 78846;78847;78848 95300;95301 95300 2 QAHTMDPQLR Oxidation (M) 1211.5717 0.57170495 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 1 0 By MS/MS 3 0 1 1 25.523 25.223 3 0.0059772 7208 20211116_3441_TMUAki_TMT10x_S_F3 62.466 49.447 60392 100060 0 84546 67185 84419 68211 77078 71241 77125 90826 56231 93309 0 87344 64446 85843 69230 78739 73037 75322 87010 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 60392 100060 0 84546 67185 84419 68211 77078 71241 77125 90826 56231 93309 0 87344 64446 85843 69230 78739 73037 75322 87010 1 1 0 1 1 1 1 1 1 1 1 3908700 0 3908700 15118 1092 13859 78849 95302 95302 1432 1 QAHVDFEAMLR Oxidation (M) 1331.6292 0.62921983 2703 Q9BW85 CCDC94 Coiled-coil domain-containing protein 94 yes yes 0 0 1 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 38.139 38.24 3 0.02428 11302 20211116_3430_TMUAki_TMT10x_P_F3 51.569 39.975 248260 593230 4425.5 487200 344570 368720 544620 404050 282540 330370 399060 231190 553150 26056 502740 335690 383730 533860 406820 303040 325690 381350 2 2 2 2 2 2 2 2 2 2 2 90135 288310 1289.5 202690 194900 188780 315270 165440 61299 98931 108470 83934 268710 10142 212620 189980 192650 305640 167400 75150 99361 103180 1 1 1 1 1 1 1 1 1 1 1 158130 304920 3136 284500 149670 179930 229350 238610 221240 231440 290580 147250 284440 15914 290120 145700 191070 228220 239420 227890 226330 278170 1 1 1 1 1 1 1 1 1 1 1 26323000 10498000 15825000 15119 2703 13860 78850;78851 95303;95304 95303 2901 2 QAIGIALETR Unmodified 1070.6084 0.60840804 2575 Q99460;Q99460-2 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 47.118 47.286 2 2.7864E-08 12448 20211116_3444_TMUAki_TMT10x_S_F5 165.58 124.16 12948000 21656000 106740 24523000 16476000 15931000 12969000 17169000 17741000 16237000 18440000 12056000 20218000 1174700 24687000 15713000 16787000 13486000 17365000 17864000 15896000 17766000 5 5 3 5 5 5 5 5 5 5 5 3717200 5435800 73186 6616000 7024500 7407500 4407900 4625600 4608000 4201100 4695400 3461700 5076600 422710 6677900 6674100 7435000 4614100 4830700 4682200 4120500 4526800 1 1 1 1 1 1 1 1 1 1 1 9230300 16221000 33558 17907000 9451200 8523400 8560900 12543000 13133000 12036000 13744000 8594200 15142000 751940 18009000 9038800 9352200 8871800 12535000 13182000 11776000 13240000 4 4 2 4 4 4 4 4 4 4 4 723770000 276750000 447020000 15120 2575 13861 78852;78853;78854;78855;78856 95305;95306;95307;95308;95309;95310 95309 6 QAIPIGLQNR Unmodified 1108.6353 0.63529149 2677 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 0 0 0 0 By MS/MS By matching 8 0 2 1 1 42.994 43.087 2 0.0003153 11376 20211116_3436_TMUAki_TMT10x_P_F8 113.71 58.03 665740 1073800 5708.8 1210300 1785300 1720300 953720 1005600 1156600 848640 1030400 619920 1002500 76195 1232700 1691200 1705000 1017200 1053800 1163300 835290 997870 1 1 1 1 1 1 1 1 1 1 1 665740 1073800 5708.8 1210300 1785300 1720300 953720 1005600 1156600 848640 1030400 619920 1002500 76195 1232700 1691200 1705000 1017200 1053800 1163300 835290 997870 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 58621000 36883000 21738000 15121 2677 13862 78857;78858 95311 95311 1 QAITQVVVSR Unmodified 1099.635 0.63495714 2841 Q9H9B4 SFXN1 Sideroflexin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 38.765 39.111 2 3.5169E-08 9626 20211116_3436_TMUAki_TMT10x_P_F8 161.51 124.49 1568800 2348200 1098.6 2715100 2555100 2277400 1696700 1540900 1531400 1485600 2007200 1460600 2192500 139010 2737400 2428000 2330500 1760800 1602200 1582000 1453200 1921500 3 3 1 3 3 3 3 3 3 3 3 1023900 1503600 1098.6 1661800 2040200 1849800 1223300 1030800 1040700 1005100 1302100 953360 1403600 94728 1686900 1935500 1854500 1277900 1088600 1076000 982700 1248000 2 2 1 2 2 2 2 2 2 2 2 544810 844660 0 1053300 514830 427600 473400 510040 490710 480500 705120 507270 788940 44283 1050500 492570 476060 482890 513530 506060 470490 673570 1 1 0 1 1 1 1 1 1 1 1 250530000 159030000 91503000 15122 2841 13863 78859;78860;78861 95312;95313;95314 95313 3 QALPCVAESPTVHVEVHQR Unmodified 2156.0797 0.079670665 1821 Q15645;Q15645-2 TRIP13 Pachytene checkpoint protein 2 homolog yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 38.848 38.918 4 3.9874E-10 9065 20211116_3444_TMUAki_TMT10x_S_F5 121.34 104.35 1276600 2052000 28357 2231300 1996000 2332700 1206800 1444300 1309300 1129900 1566000 1188900 1915400 142340 2265100 1895700 2350200 1268500 1503900 1336600 1116400 1502700 2 2 2 2 2 2 2 2 2 2 2 857060 1338800 25298 1492100 1577000 2015400 865290 941690 873570 744740 1000800 798200 1249800 104720 1519200 1495700 1996700 915170 1005700 892860 735460 961540 1 1 1 1 1 1 1 1 1 1 1 419560 713160 3058.4 739140 419000 317380 341510 502630 435740 385130 565180 390680 665550 37627 745900 400000 353500 353380 498170 443760 380980 541200 1 1 1 1 1 1 1 1 1 1 1 306670000 175240000 131430000 15123 1821 13864 78862;78863 95315;95316 95316 2 QALSGFGYR Unmodified 997.49813 0.49812931 322 O75340 PDCD6 Programmed cell death protein 6 yes yes 0 0 0 0 By MS/MS 8 0 1 1 43.306 43.481 2 0.00015494 11461 20211116_3436_TMUAki_TMT10x_P_F8 100.84 81.2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15124 322 13865 78864 95317 95317 1 QAPEPLRAEAR Unmodified 1236.6575 0.65748349 1080 P48681 NES Nestin yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 29.437 29.285 3 0.0023653 8790 20211116_3441_TMUAki_TMT10x_S_F3 74.46 35.438 443270 725470 260.07 679880 570010 577050 452130 392110 438120 387580 561690 412700 676770 34945 695270 543360 590050 464350 407870 450710 378710 538020 2 2 1 2 2 2 2 2 2 2 2 237940 388620 260.07 357120 340600 407030 240160 216870 237280 217050 309250 221550 362510 21407 367290 324080 407310 248760 230100 244070 211970 296090 1 1 1 1 1 1 1 1 1 1 1 205330 336850 0 322760 229410 170020 211980 175240 200840 170530 252440 191150 314260 13538 327980 219280 182740 215590 177760 206640 166740 241920 1 1 0 1 1 1 1 1 1 1 1 22910000 15757000 7153400 15125 1080 13866 78865;78866;78867 95318;95319 95319 2 QAQAAVLAVLPR Unmodified 1235.735 0.73500553 2610 Q99848 EBNA1BP2 Probable rRNA-processing protein EBP2 yes yes 0 0 0 0 By MS/MS 1.5 0.5 1 1 2 58.714 58.457 2 1.2088E-11 19130 20211116_3429_TMUAki_TMT10x_P_F2 167.12 146.38 3384500 5130700 0 5221800 4562000 7072800 4308400 4403400 4026400 4259600 4674200 3151100 4787800 270990 5348300 4366200 7031100 4374800 4607500 4131500 4166100 4489000 1 1 0 1 1 1 1 1 1 1 1 3384500 5130700 0 5221800 4562000 7072800 4308400 4403400 4026400 4259600 4674200 3151100 4787800 270990 5348300 4366200 7031100 4374800 4607500 4131500 4166100 4489000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 296650000 296650000 0 15126 2610 13867 78868;78869 95320;95321 95321 2 QAQEKFELSENCSERPGLR Unmodified 2277.0808 0.080792877 1694 Q14203;Q14203-6;Q14203-3;Q14203-4;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 2 By MS/MS 5 0 1 1 38.259 38.405 4 4.9138E-12 8871 20211116_3444_TMUAki_TMT10x_S_F5 128.38 112.49 1796100 2958900 28200 3062100 2057700 1435500 1651800 2145300 2003600 1921000 2528400 1672500 2761400 178850 3092300 1964500 1578700 1707600 2138600 2041500 1885400 2422800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1796100 2958900 28200 3062100 2057700 1435500 1651800 2145300 2003600 1921000 2528400 1672500 2761400 178850 3092300 1964500 1578700 1707600 2138600 2041500 1885400 2422800 2 2 2 2 2 2 2 2 2 2 2 79080000 0 79080000 15127 1694 13868 78870 95322;95323 95322 2 QAQIEVVPSASALIIK Unmodified 1665.9665 0.96652161 864 P30050 RPL12 60S ribosomal protein L12 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.775 3 4 3 5 5 71.34 71.435 2;3 1.0189E-46 24607 20211116_3446_TMUAki_TMT10x_S_F7 248.36 212.42 96766000 166160000 2128500 158210000 119480000 145170000 111440000 99396000 78723000 93908000 121420000 90112000 155020000 9994000 161240000 114470000 147660000 112440000 103200000 82805000 91942000 115810000 15 15 13 14 15 15 14 15 14 15 15 51439000 85791000 1281200 79744000 55877000 105630000 61665000 54328000 40407000 48917000 63551000 47904000 80030000 5452700 81635000 53796000 104860000 61585000 57664000 42631000 47998000 60589000 8 8 7 7 8 8 7 8 7 8 8 45327000 80370000 847370 78468000 63604000 39533000 49774000 45067000 38315000 44991000 57867000 42208000 74986000 4541300 79602000 60673000 42800000 50857000 45540000 40174000 43944000 55217000 7 7 6 7 7 7 7 7 7 7 7 23079000000 11599000000 11480000000 15128 864 13869 78871;78872;78873;78874;78875;78876;78877;78878;78879;78880 95324;95325;95326;95327;95328;95329;95330;95331;95332;95333;95334;95335;95336;95337;95338;95339 95336 16 QAQIVVKPR Unmodified 1037.6346 0.63456321 2520 Q96MW1;Q96MW1-2 CCDC43 Coiled-coil domain-containing protein 43 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 32.663 32.679 3 4.2546E-05 8993 20211116_3439_TMUAki_TMT10x_S_F1 141.48 126.7 934720 1367000 6300.6 1493700 1130500 1235400 990870 969390 1010700 818570 1121400 870340 1276000 83369 1511000 1080600 1268500 1013000 994520 1031300 805670 1078300 2 2 1 2 2 2 2 2 2 2 2 428290 595090 0 668410 629280 753830 462630 475240 472260 351650 510350 398760 555560 35584 677980 599010 756420 478280 493550 481370 348530 491140 1 1 0 1 1 1 1 1 1 1 1 506430 771870 6300.6 825310 501190 481520 528240 494150 538490 466920 611030 471590 720440 47785 833040 481630 512030 534720 500970 549940 457140 587190 1 1 1 1 1 1 1 1 1 1 1 42801000 25307000 17494000 15129 2520 13870 78881;78882 95340;95341 95341 2 QAQLAQTLQQQEQASQGLR Unmodified 2125.0876 0.087592814 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 51.519 51.663 3 8.5057E-32 14480 20211116_3445_TMUAki_TMT10x_S_F6 191.41 170.18 3999600 7442900 108000 7182000 6723500 8697900 5684700 7481700 7382900 6281500 6422900 3724800 6944000 470390 7367900 6427200 8740000 5873100 7632400 7402500 6184300 6225700 3 3 3 3 3 3 3 3 3 3 3 2873600 5242900 72762 4966800 5595500 7636900 4653400 5421500 5242700 4580500 4577400 2676100 4891100 344170 5126400 5346000 7565500 4787600 5598800 5284100 4508200 4436200 2 2 2 2 2 2 2 2 2 2 2 1126000 2200000 35239 2215200 1128000 1060900 1031300 2060200 2140300 1701100 1845500 1048700 2052900 126220 2241500 1081300 1174500 1085500 2033500 2118400 1676100 1789400 1 1 1 1 1 1 1 1 1 1 1 2111500000 1359200000 752290000 15130 1741 13871 78883;78884;78885 95342;95343;95344 95344 3 QAQQERDELADEIANSSGK Unmodified 2087.972 0.97195393 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 1 By MS/MS 4 0 1 1 46.944 47.134 3 1.607E-17 13634 20211116_3442_TMUAki_TMT10x_S_F4 146.89 130.21 1503300 2844500 44956 3126000 764990 1242800 807360 12021000 3933100 4554200 4868100 1400100 2655300 156190 3141000 737290 1624500 913490 11454000 3897600 4755500 4667200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1503300 2844500 44956 3126000 764990 1242800 807360 12021000 3933100 4554200 4868100 1400100 2655300 156190 3141000 737290 1624500 913490 11454000 3897600 4755500 4667200 1 1 1 1 1 1 1 1 1 1 1 146710000 0 146710000 15131 934 13872 78886 95345 95345 1 QAQVPLAAVIKPLAR Unmodified 1573.9668 0.96679638 1214 P53992 SEC24C Protein transport protein Sec24C yes yes 0 0 0 1 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 60.702 60.737 3 0.00027526 17898 20211116_3444_TMUAki_TMT10x_S_F5 74.789 64.902 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15132 1214 13873 78887;78888;78889 95346;95347;95348 95348 3 QAQYLGMSCDGPFKPDHYR Oxidation (M) 2284.9994 0.99937143 786 P23526;P23526-2 AHCY Adenosylhomocysteinase yes no 0 0 1 1 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 40.924 41.278 4 3.1008E-08 10094 20211116_3445_TMUAki_TMT10x_S_F6 105.5 97.879 7439000 11333000 46012 13347000 16740000 18126000 9625200 10772000 10319000 8707800 10320000 6926200 10582000 715110 13545000 15870000 18005000 10157000 11261000 10467000 8589500 9955200 5 5 2 5 5 5 5 5 5 5 5 6655200 9981300 33704 11785000 16214000 17489000 9138300 9698000 9200500 7728900 9171000 6196300 9320300 643150 11981000 15366000 17290000 9641300 10194000 9356200 7629600 8847800 3 3 1 3 3 3 3 3 3 3 3 783760 1351300 12308 1561700 525440 637160 486930 1073500 1118200 978860 1148900 729850 1261700 71962 1564600 503540 715940 515470 1066700 1111100 959910 1107400 2 2 1 2 2 2 2 2 2 2 2 2379500000 2282500000 97035000 15133 786 13874 78890;78891;78892 95349;95350;95351;95352;95353 95353 928 5 QAQYLGMSCDGPFKPDHYR Unmodified 2269.0045 0.004456811 786 P23526;P23526-2 AHCY Adenosylhomocysteinase yes no 0 0 0 1 By MS/MS 7.5 0.5 1 1 2 47.297 47.496 4 0.0012894 14898 20211116_3446_TMUAki_TMT10x_S_F7 62.203 47.784 2365000 4416700 8737 4324000 2025700 2020800 1768500 3040100 3033500 2670800 3280400 2202100 4120900 199460 4383300 1936400 2223700 1846500 3028500 3039500 2623600 3156800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2365000 4416700 8737 4324000 2025700 2020800 1768500 3040100 3033500 2670800 3280400 2202100 4120900 199460 4383300 1936400 2223700 1846500 3028500 3039500 2623600 3156800 1 1 1 1 1 1 1 1 1 1 1 551450000 0 551450000 15134 786 13874 78893;78894 95354 95354 1 QAQYLGMSCDGPFKPDHYRY Oxidation (M) 2448.0627 0.062699971 786 P23526;P23526-2 AHCY Adenosylhomocysteinase yes no 0 0 1 2 By MS/MS By MS/MS 7 0.756 2 3 2 4 3 46.038 46.262 3;4 8.2969E-13 12280 20211116_3445_TMUAki_TMT10x_S_F6 127.91 118.33 29780000 51804000 339370 57881000 40747000 47608000 29715000 48742000 47634000 42899000 41719000 27728000 48362000 2626000 58466000 38793000 49159000 31273000 49325000 47465000 42138000 40428000 12 12 8 12 12 12 12 12 12 12 12 11224000 20430000 201860 23172000 24645000 32868000 18590000 18157000 18225000 16190000 14819000 10452000 19074000 1205400 23591000 23484000 32555000 19162000 19144000 18436000 15893000 14401000 6 6 5 6 6 6 6 6 6 6 6 18555000 31374000 137520 34709000 16103000 14740000 11125000 30585000 29409000 26709000 26900000 17276000 29288000 1420600 34875000 15309000 16604000 12111000 30181000 29030000 26245000 26027000 6 6 3 6 6 6 6 6 6 6 6 8876000000 5681300000 3194700000 15135 786 13875 78895;78896;78897;78898;78899;78900;78901 95355;95356;95357;95358;95359;95360;95361;95362;95363;95364;95365;95366;95367 95362 928 13 QAQYLGMSCDGPFKPDHYRY Unmodified 2432.0678 0.067785349 786 P23526;P23526-2 AHCY Adenosylhomocysteinase yes no 0 0 0 2 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 51.445 51.735 4 2.3876E-09 14874 20211116_3436_TMUAki_TMT10x_P_F8 118.37 110.47 31883000 49931000 249250 55719000 36220000 40039000 35533000 25020000 21286000 22859000 34937000 29687000 46613000 2857600 56199000 34722000 41419000 35638000 26132000 22763000 22414000 33280000 6 6 4 6 6 6 6 6 6 6 6 19600000 29219000 145730 34029000 23336000 30791000 25201000 13631000 11912000 13294000 21237000 18250000 27282000 1813100 34327000 22431000 31182000 25053000 14715000 13031000 12998000 20198000 3 3 3 3 3 3 3 3 3 3 3 12283000 20713000 103520 21690000 12885000 9248700 10333000 11389000 9374200 9564900 13700000 11437000 19331000 1044500 21872000 12291000 10237000 10585000 11416000 9732000 9416700 13082000 3 3 1 3 3 3 3 3 3 3 3 3892800000 2073600000 1819200000 15136 786 13875 78902;78903;78904;78905 95368;95369;95370;95371;95372;95373 95370 6 QASALIDRPAPHFER Unmodified 1706.8853 0.8852516 617 P11171;P11171-2;P11171-4;P11171-5;P11171-3;P11171-6;P11171-7 EPB41 Protein 4.1 yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.133 35.187 4 2.4785E-33 8797 20211116_3433_TMUAki_TMT10x_P_F5 220.97 193.94 710130 1014800 5073.6 1304900 1551400 1339000 785380 1030900 924580 800630 1047300 661210 948020 71749 1311200 1468400 1355000 841010 1056800 938870 791430 1006500 2 2 1 2 2 2 2 2 2 2 2 508190 705060 0 912100 1373700 1158700 622090 702090 610010 541840 723400 473140 658670 50616 919550 1298000 1155000 669940 732080 625130 535790 694330 1 1 0 1 1 1 1 1 1 1 1 201940 309760 5073.6 392760 177760 180260 163290 328810 314580 258790 323930 188070 289350 21132 391640 170390 200090 171070 324720 313740 255640 312190 1 1 1 1 1 1 1 1 1 1 1 305700000 250200000 55507000 15137 617 13876 78906;78907;78908 95374;95375 95374 2 QASEGPLK Unmodified 828.43413 0.43413207 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS 3.11 1.45 2 1 2 2 2 5 4 31.105 31.055 2;3 0.00097129 7369 20211116_3431_TMUAki_TMT10x_P_F4 130.56 93.541 9721600 16958000 54238 13326000 11178000 14278000 7889400 6804200 8056700 7088600 10920000 9052000 15810000 856360 13865000 10637000 14319000 8179700 7303700 8290500 6911400 10445000 6 6 2 6 6 6 6 6 6 6 6 7369300 12653000 53599 9908500 8648300 12121000 5251000 5022300 6059400 5285100 8096300 6861800 11797000 670880 10335000 8209700 12052000 5529000 5472500 6201300 5150900 7747100 3 3 1 3 3 3 3 3 3 3 3 2352300 4305100 639.43 3417100 2529800 2157000 2638300 1781900 1997300 1803500 2823300 2190200 4013800 185490 3529900 2427700 2266700 2650700 1831300 2089200 1760500 2697900 3 3 1 3 3 3 3 3 3 3 3 655390000 422970000 232420000 15138 489 13877 78909;78910;78911;78912;78913;78914;78915;78916;78917 95376;95377;95378;95379;95380;95381;95382;95383;95384 95378 9 QASLADCLNHAVGFASR Unmodified 1815.8686 0.86861526 223 O43592 XPOT Exportin-T yes yes 0 0 0 0 By MS/MS 8 0 1 1 56.617 56.579 3 0.10502 16295 20211116_3447_TMUAki_TMT10x_S_F8 21.1 10.49 9406000 17234000 0 15174000 9623100 9433700 7482500 16750000 17240000 13335000 14796000 8757800 16073000 778110 15540000 9172900 10129000 8003800 16559000 17025000 13164000 14348000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9406000 17234000 0 15174000 9623100 9433700 7482500 16750000 17240000 13335000 14796000 8757800 16073000 778110 15540000 9172900 10129000 8003800 16559000 17025000 13164000 14348000 1 1 0 1 1 1 1 1 1 1 1 274470000 0 274470000 15139 223 13878 78918 95385 95385 1 QASPNIVIALAGNK Unmodified 1394.7882 0.78816332 1150 P51148;P51148-2 RAB5C Ras-related protein Rab-5C yes no 0 0 0 0 By MS/MS By MS/MS 1.57 0.495 3 4 4 3 64.296 64.107 2;3 1.037E-09 20088 20211116_3440_TMUAki_TMT10x_S_F2 138.75 117.85 52176000 83646000 247060 81353000 54966000 76848000 60440000 47777000 48050000 52068000 59474000 48581000 78042000 4397600 83088000 52844000 77912000 60637000 50172000 49830000 50676000 57018000 11 11 5 11 11 11 11 11 11 11 11 30485000 47227000 176180 45181000 32909000 55354000 37731000 27186000 28365000 30222000 33820000 28385000 44060000 2600700 46388000 31678000 55130000 37730000 29154000 29460000 29392000 32456000 6 6 3 6 6 6 6 6 6 6 6 21691000 36419000 70874 36172000 22058000 21494000 22709000 20591000 19685000 21846000 25653000 20197000 33982000 1796900 36700000 21166000 22782000 22907000 21019000 20370000 21284000 24562000 5 5 2 5 5 5 5 5 5 5 5 4188600000 2518300000 1670300000 15140 1150 13879 78919;78920;78921;78922;78923;78924;78925 95386;95387;95388;95389;95390;95391;95392;95393;95394;95395;95396 95396 11 QASQGMVGQLAAR Unmodified 1315.6667 0.66666797 3221 Q9Y230 RUVBL2 RuvB-like 2 yes yes 0 0 0 0 By MS/MS 7 0 1 1 35.396 35.83 2 1.9949E-05 9695 20211116_3435_TMUAki_TMT10x_P_F7 95.094 75.823 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15141 3221 13880 78926 95397 95397 1 QASTLIDRPAPHFER Unmodified 1736.8958 0.89581629 220 O43491;O43491-4;O43491-2;O43491-3 EPB41L2 Band 4.1-like protein 2 yes no 0 0 0 1 By MS/MS 5 0 1 1 33.973 34.15 4 2.5859E-10 7147 20211116_3444_TMUAki_TMT10x_S_F5 139.08 120.22 192380 329350 9404.9 408650 158900 144740 171860 300520 319980 233500 311460 179190 307620 24246 407350 153260 167230 178230 295680 318740 230810 300720 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 192380 329350 9404.9 408650 158900 144740 171860 300520 319980 233500 311460 179190 307620 24246 407350 153260 167230 178230 295680 318740 230810 300720 1 1 1 1 1 1 1 1 1 1 1 44866000 0 44866000 15142 220 13881 78927 95398 95398 1 QASVGAGIPYSVPAWSCQMICGSGLK Oxidation (M) 2739.2819 0.28187722 2706 Q9BWD1;Q9BWD1-2 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes no 0 0 1 0 By MS/MS 3 0 1 1 74.647 74.398 3 1.6735E-09 27036 20211116_3441_TMUAki_TMT10x_S_F3 100.93 94.278 2256000 3543300 7687 3498300 2850800 2502600 2655500 1781600 1668100 2151600 2666000 2100500 3306100 192880 3557100 2728400 2594700 2673300 1858900 1775600 2086100 2540900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2256000 3543300 7687 3498300 2850800 2502600 2655500 1781600 1668100 2151600 2666000 2100500 3306100 192880 3557100 2728400 2594700 2673300 1858900 1775600 2086100 2540900 2 2 1 2 2 2 2 2 2 2 2 213730000 0 213730000 15143 2706 13882 78928 95399;95400 95400 2909 2 QATENAKEEVRR Unmodified 1429.7274 0.72735397 821 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 2 By MS/MS 3 0 1 1 26.81 26.517 4 0.00045677 7720 20211116_3441_TMUAki_TMT10x_S_F3 82.925 62.262 91922 150810 0 144290 61644 109310 104740 56027 82896 70655 92767 85589 140690 0 147130 60190 112320 103310 60091 85638 68403 89184 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 91922 150810 0 144290 61644 109310 104740 56027 82896 70655 92767 85589 140690 0 147130 60190 112320 103310 60091 85638 68403 89184 1 1 0 1 1 1 1 1 1 1 1 3786900 0 3786900 15144 821 13883 78929 95401 95401 1 QATINIGTIGHVAHGK Unmodified 1615.8794 0.87943794 993 P41091;Q2VIR3;Q2VIR3-2 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 0 0 0 0 By MS/MS By MS/MS 3 2.92 2 1 1 2 2 40.44 40.476 4 1.9651E-15 10187 20211116_3428_TMUAki_TMT10x_P_F1 154.69 98.209 3162400 4922000 10192 5733300 6857200 5705100 3736000 4009000 3542700 3472800 4142100 2944400 4595700 302220 5791200 6495800 5775600 3946800 4145600 3633800 3413800 3977200 5 5 2 5 5 5 5 5 5 5 5 2211300 3413400 2221.3 4010700 6014700 4939200 2890600 2784500 2422600 2414800 2888500 2058800 3187300 217610 4063300 5687400 4926000 3080900 2928800 2501600 2373700 2772000 3 3 1 3 3 3 3 3 3 3 3 951120 1508500 7970.4 1722600 842560 765840 845370 1224500 1120200 1058000 1253600 885650 1408400 84610 1727900 808430 849510 865850 1216900 1132300 1040200 1205200 2 2 1 2 2 2 2 2 2 2 2 756550000 539000000 217550000 15145 993 13884 78930;78931;78932;78933 95402;95403;95404;95405;95406 95403 5 QATSTASTFVKPIFSR Unmodified 1739.9206 0.92063405 1260 P56556 NDUFA6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 yes yes 0 0 0 1 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 53.432 53.273 3 1.9359E-16 16153 20211116_3442_TMUAki_TMT10x_S_F4 159.95 139.9 10124000 17993000 68819 18331000 10063000 13269000 8765400 11441000 10286000 10035000 11421000 9426800 16791000 902620 18602000 9620400 13789000 9006000 11682000 10438000 9858200 10982000 2 2 2 2 2 2 2 2 2 2 2 2476600 3919500 7033.7 4167800 3391100 6285000 3328700 4147900 3740600 3521600 3258000 2306000 3658300 224690 4265900 3250400 6224100 3392500 4306400 3770300 3465200 3157800 1 1 1 1 1 1 1 1 1 1 1 7647300 14074000 61786 14164000 6671900 6984400 5436600 7292900 6544900 6512900 8162500 7120800 13133000 677930 14336000 6370000 7565000 5613500 7376000 6667200 6393000 7824000 1 1 1 1 1 1 1 1 1 1 1 686570000 139170000 547400000 15146 1260 13885 78934;78935;78936 95407 95407 1 QATVGDINTERPGMLDFTGK Oxidation (M) 2165.0423 0.042282105 530 P07108;P07108-5;P07108-3;P07108-2;P07108-4 DBI Acyl-CoA-binding protein yes no 0 0 1 1 By MS/MS By MS/MS 5.09 0.793 3 4 4 6 5 52.086 52.236 3;4 8.7497E-13 15525 20211116_3433_TMUAki_TMT10x_P_F5 128.67 110.97 61295000 108250000 657930 110070000 93052000 124510000 72994000 118070000 124040000 100920000 96343000 57074000 101010000 5788800 112380000 88735000 125810000 76670000 119860000 122970000 99269000 93796000 19 19 14 19 19 19 19 19 19 19 19 36823000 62861000 304040 64997000 69483000 100780000 55608000 68004000 71928000 57800000 56084000 34286000 58664000 3478900 66691000 66273000 99722000 57636000 70490000 71898000 56871000 54593000 11 11 8 11 11 11 11 11 11 11 11 24472000 45388000 353890 45073000 23569000 23736000 17386000 50065000 52113000 43118000 40260000 22788000 42351000 2309900 45685000 22463000 26089000 19034000 49366000 51076000 42398000 39204000 8 8 6 8 8 8 8 8 8 8 8 9439900000 5250200000 4189700000 15147 530 13886 78937;78938;78939;78940;78941;78942;78943;78944;78945;78946;78947 95408;95409;95410;95411;95412;95413;95414;95415;95416;95417;95418;95419;95420;95421;95422;95423;95424;95425;95426 95414 450 19 QATVGDINTERPGMLDFTGK Unmodified 2149.0474 0.047367483 530 P07108;P07108-5;P07108-3;P07108-2;P07108-4 DBI Acyl-CoA-binding protein yes no 0 0 0 1 By MS/MS By MS/MS 6.2 0.4 4 1 2 3 58.48 58.624 3;4 3.5591E-18 17375 20211116_3445_TMUAki_TMT10x_S_F6 151.01 132.42 38656000 63485000 557280 77445000 45861000 39503000 39989000 24414000 21237000 26914000 43622000 35996000 59290000 3732700 77453000 43854000 42244000 40289000 25659000 23220000 26183000 41388000 7 7 6 7 7 7 7 7 7 7 7 14653000 22790000 299670 28357000 20973000 22848000 19408000 8457100 7534100 9444900 15904000 13646000 21286000 1582600 28453000 20088000 23292000 19401000 9354400 8481300 9183600 15083000 3 3 3 3 3 3 3 3 3 3 3 24003000 40695000 257620 49088000 24889000 16655000 20581000 15957000 13703000 17469000 27719000 22350000 38004000 2150100 49000000 23766000 18952000 20889000 16304000 14739000 16999000 26305000 4 4 3 4 4 4 4 4 4 4 4 4473300000 2106300000 2367000000 15148 530 13886 78948;78949;78950;78951;78952 95427;95428;95429;95430;95431;95432;95433 95432 7 QAVDFLSNEGHIYSTVDDDHFK Unmodified 2536.1506 0.15064658 689 P15927;P15927-2;P15927-3 RPA2 Replication protein A 32 kDa subunit yes no 0 0 0 0 By MS/MS By MS/MS 3.25 1.09 1 2 1 2 2 62.568 62.335 4 1.4502E-19 21126 20211116_3430_TMUAki_TMT10x_P_F3 148.04 139.22 14853000 25575000 220480 26379000 18209000 25577000 16742000 18526000 18881000 20504000 19252000 13831000 23867000 1440900 26842000 17433000 25947000 17125000 19251000 19127000 19944000 18560000 6 6 4 6 6 6 6 6 6 6 6 7156300 12078000 58980 12486000 8834600 16568000 8564200 8328400 8115800 9218400 8880600 6663400 11272000 644910 12770000 8466100 16441000 8687300 8910200 8303200 8966500 8543100 3 3 2 3 3 3 3 3 3 3 3 7696800 13496000 161500 13893000 9374300 9009000 8177700 10197000 10765000 11286000 10371000 7167600 12595000 795980 14072000 8967200 9505700 8437600 10341000 10824000 10977000 10017000 3 3 2 3 3 3 3 3 3 3 3 1902700000 726990000 1175700000 15149 689 13887 78953;78954;78955;78956 95434;95435;95436;95437;95438;95439 95435 6 QAVDVSPLR Unmodified 983.53999 0.53999412 1055 P46782 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 37.323 37.41 2 0.0072218 9276 20211116_3442_TMUAki_TMT10x_S_F4 74.772 40.37 3576200 5339100 3039.9 5310400 6968200 8120600 4252800 4456200 4839900 3791900 4755600 3329000 4981800 246430 5461500 6606800 8017000 4473900 4695800 4895100 3730700 4590200 2 2 1 2 2 2 2 2 2 2 2 3194400 4809100 0 4707300 6640000 7834500 3887800 4209100 4576200 3526600 4330200 2973500 4487000 212690 4856200 6291000 7706900 4108700 4442000 4616700 3472400 4184800 1 1 0 1 1 1 1 1 1 1 1 381820 530010 3039.9 603100 328240 286060 365010 247130 263700 265230 425450 355530 494830 33738 605360 315840 310100 365190 253770 278440 258290 405400 1 1 1 1 1 1 1 1 1 1 1 309470000 277650000 31821000 15150 1055 13888 78957;78958 95440;95441 95441 2 QAVHCIHAIFTNK Unmodified 1537.7824 0.78236643 1875 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 0 0 0 0 By MS/MS 3 0 1 1 40.93 40.628 4 0.00068631 13299 20211116_3441_TMUAki_TMT10x_S_F3 78.763 55.527 519740 843820 0 936530 517260 374450 462170 602000 509270 459400 705960 483850 787720 32319 940470 493890 421250 473140 596320 523010 454550 674920 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 519740 843820 0 936530 517260 374450 462170 602000 509270 459400 705960 483850 787720 32319 940470 493890 421250 473140 596320 523010 454550 674920 1 1 0 1 1 1 1 1 1 1 1 99874000 0 99874000 15151 1875 13889 78959 95442 95442 1 QAVLGAGLPISTPCTTINK Unmodified 1940.0401 0.040097261 795 P24752;P24752-2 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 66.604 66.336 3 2.1902E-08 22292 20211116_3429_TMUAki_TMT10x_P_F2 104.89 90.208 5206800 8668000 32252 8565100 6082400 7750600 5763100 5978400 6091500 6547600 6586400 4848100 8087800 451810 8732900 5824500 7906200 5872700 6184900 6200200 6371300 6338300 2 2 1 2 2 2 2 2 2 2 2 2769400 4616300 0 4541700 3389800 5313300 3329400 3553900 3431700 3744600 3408000 2578400 4307300 216100 4650100 3247400 5325700 3383400 3707800 3485800 3649300 3288300 1 1 0 1 1 1 1 1 1 1 1 2437500 4051700 32252 4023400 2692500 2437200 2433800 2424600 2659900 2803000 3178400 2269700 3780600 235710 4082800 2577200 2580500 2489200 2477100 2714400 2722000 3050000 1 1 1 1 1 1 1 1 1 1 1 1007200000 611990000 395210000 15152 795 13890 78960;78961 95443;95444 95443 2 QAVPGRPGPFPSK Unmodified 1336.7252 0.72516913 3311 Q9Y520;Q9Y520-3;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520-7;Q9Y520-2 PRRC2C Protein PRRC2C yes no 0 0 0 1 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 37.035 36.916 3 0.00043739 10268 20211116_3429_TMUAki_TMT10x_P_F2 81.311 61.214 1078300 1561000 0 1835000 2780500 2117500 1321100 1197500 1338400 1049200 1452300 1003900 1457600 96315 1856800 2628200 2119100 1416900 1259500 1364900 1030800 1397500 1 1 0 1 1 1 1 1 1 1 1 1078300 1561000 0 1835000 2780500 2117500 1321100 1197500 1338400 1049200 1452300 1003900 1457600 96315 1856800 2628200 2119100 1416900 1259500 1364900 1030800 1397500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 128420000 128420000 0 15153 3311 13891 78962;78963;78964 95445;95446 95445 2 QAVPISVPR Unmodified 965.56581 0.56581494 2515 Q96L92;Q96L92-3;Q96L92-2 SNX27 Sorting nexin-27 yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 38.848 39.277 2 0.0021386 11072 20211116_3446_TMUAki_TMT10x_S_F7 89.047 66.028 1885800 3005700 2066.5 3098600 3212400 3154500 2096000 2121600 2270000 1792800 2431200 1755700 2805000 155670 3155400 3050900 3187000 2189800 2199400 2307500 1764500 2340300 4 4 2 4 4 4 4 4 4 4 4 1351500 2085300 0 2102100 2663900 2690900 1531300 1531900 1576300 1237700 1661000 1258200 1945900 109260 2152100 2524500 2679000 1613900 1607200 1604700 1220900 1599700 1 1 0 1 1 1 1 1 1 1 1 534330 920380 2066.5 996560 548500 463620 564670 589710 693690 555130 770150 497530 859100 46414 1003300 526460 508010 575910 592180 702770 543600 740570 3 3 2 3 3 3 3 3 3 3 3 57497000 42335000 15161000 15154 2515 13892 78965;78966;78967 95447;95448;95449;95450 95450 4 QAVSMFLGAVEEAKK Oxidation (M) 1622.8338 0.83379288 1098 P49419-2;P49419 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 0 0 1 1 By MS/MS By MS/MS 8 0 2 1 1 68.601 68.578 3 6.432E-05 21652 20211116_3436_TMUAki_TMT10x_P_F8 87.429 74.661 10626000 18429000 148410 17077000 13869000 19649000 12343000 20073000 21350000 18683000 16751000 9895200 17191000 1064700 17556000 13268000 19868000 12878000 20345000 21163000 18304000 16302000 3 3 3 3 3 3 3 3 3 3 3 3671500 6312400 53572 5731300 5420100 10633000 4796000 7037600 7717000 6675300 5843300 3418900 5888000 378810 5961200 5184600 10449000 4987800 7326000 7656400 6534400 5694800 1 1 1 1 1 1 1 1 1 1 1 6954800 12117000 94843 11346000 8448400 9016400 7546800 13035000 13633000 12008000 10908000 6476300 11303000 685910 11594000 8083800 9419300 7890600 13019000 13506000 11770000 10607000 2 2 2 2 2 2 2 2 2 2 2 1329700000 902080000 427590000 15155 1098 13893 78968;78969 95451;95452;95453 95451 1460 3 QAVSMFLGAVEEAKK Unmodified 1606.8389 0.83887826 1098 P49419-2;P49419 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 0 0 0 1 By MS/MS 1 0 1 1 76.612 76.548 3 5.4123E-10 26815 20211116_3439_TMUAki_TMT10x_S_F1 115.57 80.749 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15156 1098 13893 78970 95454 95454 1 QAVTNPNNTFYATK Unmodified 1567.7631 0.76307078 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 By MS/MS 7 0 1 1 44.029 44.534 3 0.058837 13132 20211116_3435_TMUAki_TMT10x_P_F7 35.711 16.388 3578400 5808500 0 5222300 5325100 6216200 5005800 3453100 3294300 2679900 4295900 3331700 5417800 303220 5383900 5096800 6209200 5041300 3627200 3461900 2649200 4113100 1 1 0 1 1 1 1 1 1 1 1 3578400 5808500 0 5222300 5325100 6216200 5005800 3453100 3294300 2679900 4295900 3331700 5417800 303220 5383900 5096800 6209200 5041300 3627200 3461900 2649200 4113100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 313970000 313970000 0 15157 972 13894 78971 95455 95455 1 QAVTNPNNTFYATKR Unmodified 1723.8642 0.86418181 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 1 By MS/MS By matching 1.33 0.471 2 1 2 1 36.768 36.671 3 2.527E-10 10217 20211116_3429_TMUAki_TMT10x_P_F2 138.91 119.35 490960 881520 0 1022900 2140800 1919400 941020 1786500 1510400 757790 1114300 457090 823080 59118 1046900 2022200 1897100 1034900 1792300 1497600 782470 1087200 2 2 0 2 2 2 2 2 2 2 2 490960 881520 0 1022900 2140800 1919400 941020 1786500 1510400 757790 1114300 457090 823080 59118 1046900 2022200 1897100 1034900 1792300 1497600 782470 1087200 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 108160000 95369000 12789000 15158 972 13895 78972;78973;78974 95456;95457 95457 2 QAYVDKLEELMK Oxidation (M) 1481.7436 0.74358089 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 1 1 By MS/MS By matching 6.8 0.748 2 2 1 3 2 59.897 60.219 3 0.013112 18208 20211116_3436_TMUAki_TMT10x_P_F8 62.89 41.937 20908000 33733000 145830 33746000 40679000 61080000 32052000 40873000 41610000 35335000 32242000 19468000 31477000 2118400 34835000 38795000 60084000 33259000 42411000 41581000 34738000 31392000 3 3 2 3 3 3 3 3 3 3 3 20908000 33733000 145830 33746000 40679000 61080000 32052000 40873000 41610000 35335000 32242000 19468000 31477000 2118400 34835000 38795000 60084000 33259000 42411000 41581000 34738000 31392000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1836700000 1265000000 571700000 15159 2345 13896 78975;78976;78977;78978;78979 95458;95459;95460;95461 95461 2693 4 QAYVDKLEELMK Unmodified 1465.7487 0.74866627 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 1 By MS/MS By MS/MS 6.38 1.32 1 1 2 2 2 5 3 74.116 74.146 3 2.406E-06 25742 20211116_3446_TMUAki_TMT10x_S_F7 116.96 96.091 109660000 174230000 1695400 189150000 125030000 118610000 124460000 58080000 45175000 67710000 113750000 102110000 162630000 10504000 190860000 119950000 123820000 123820000 62394000 51861000 65732000 107610000 10 10 9 10 10 10 10 10 10 10 10 59375000 92385000 1021900 101220000 64491000 78855000 70403000 29911000 23207000 35253000 59563000 55289000 86238000 5563900 102300000 62023000 80612000 69643000 33042000 26964000 34209000 56333000 5 5 4 5 5 5 5 5 5 5 5 50282000 81841000 673500 87934000 60537000 39756000 54060000 28168000 21969000 32457000 54191000 46823000 76389000 4940100 88556000 57923000 43212000 54181000 29353000 24897000 31523000 51278000 5 5 5 5 5 5 5 5 5 5 5 3825300000 2158000000 1667400000 15160 2345 13896 78980;78981;78982;78983;78984;78985;78986;78987 95462;95463;95464;95465;95466;95467;95468;95469;95470;95471 95469 10 QCVPFRR Unmodified 961.4916 0.49160414 721 P18621;P18621-3;P18621-2 RPL17 60S ribosomal protein L17 yes no 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 28.702 28.597 3 0.053627 6998 20211116_3429_TMUAki_TMT10x_P_F2 55.604 35.322 1054800 1699400 25659 1543200 1229300 1443700 1213700 1041600 1050400 1035100 1237400 982310 1585100 113810 1583800 1179900 1467900 1226800 1079100 1082400 1011200 1187900 5 5 5 5 5 5 5 5 5 5 5 453760 753090 3556.7 652250 582690 827460 549880 471630 476920 453140 539050 422530 702340 42740 675150 558100 824150 557230 496930 490580 443320 518080 2 2 2 2 2 2 2 2 2 2 2 601040 946290 22102 890910 646600 616260 663790 569950 573480 581940 698370 559790 882780 71066 908680 621760 643710 669610 582180 591800 567860 669820 3 3 3 3 3 3 3 3 3 3 3 18784000 12343000 6441600 15161 721 13897 78988;78989;78990;78991 95472;95473 95473 2 QDAQVVLYR Unmodified 1090.5771 0.57710791 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS 3 0 1 1 38.434 38.477 2 0.015884 11299 20211116_3430_TMUAki_TMT10x_P_F3 62.869 31.496 191310 317790 4758.5 315400 363940 387490 245890 175530 186310 185810 268080 178160 296520 22713 323000 346280 385540 253740 189470 195050 181050 256080 1 1 1 1 1 1 1 1 1 1 1 191310 317790 4758.5 315400 363940 387490 245890 175530 186310 185810 268080 178160 296520 22713 323000 346280 385540 253740 189470 195050 181050 256080 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5122300 5122300 0 15162 1433 13898 78992 95474 95474 1 QDFVQHFSQIVR Unmodified 1502.763 0.7630112 667 P14324;P14324-2 FDPS Farnesyl pyrophosphate synthase yes no 0 0 0 0 By MS/MS By MS/MS 2.75 1.09 1 2 1 1 3 56.16 55.812 3 1.1166E-05 18432 20211116_3430_TMUAki_TMT10x_P_F3 99.668 81.532 3652800 5758400 17090 6314100 3761000 3339100 3352900 4147300 3665700 3933600 4676000 3401000 5375300 288730 6357700 3594900 3603300 3432000 4169500 3751400 3850600 4479500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3652800 5758400 17090 6314100 3761000 3339100 3352900 4147300 3665700 3933600 4676000 3401000 5375300 288730 6357700 3594900 3603300 3432000 4169500 3751400 3850600 4479500 2 2 1 2 2 2 2 2 2 2 2 368020000 0 368020000 15163 667 13899 78993;78994;78995;78996 95475;95476;95477;95478 95475 4 QDGPMPKPHSVSLNDTETR Oxidation (M) 2123.9906 0.99058089 3050 Q9P0L0;Q9P0L0-2 VAPA Vesicle-associated membrane protein-associated protein A yes no 0 0 1 1 By MS/MS 5 0 1 1 31.501 31.437 4 3.1716E-18 7287 20211116_3433_TMUAki_TMT10x_P_F5 157.85 147.9 145260 236150 0 284540 501480 402500 202710 209690 277640 161140 231810 135250 220540 16533 288620 473300 398430 223560 221470 277550 159380 225040 1 1 0 1 1 1 1 1 1 1 1 145260 236150 0 284540 501480 402500 202710 209690 277640 161140 231810 135250 220540 16533 288620 473300 398430 223560 221470 277550 159380 225040 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 40742000 40742000 0 15164 3050 13900 78997 95479 95479 3095 1 QDGPMPKPHSVSLNDTETR Unmodified 2107.9957 0.99566626 3050 Q9P0L0;Q9P0L0-2 VAPA Vesicle-associated membrane protein-associated protein A yes no 0 0 0 1 By MS/MS 5 0 1 1 34.853 34.804 4 2.0611E-17 8612 20211116_3433_TMUAki_TMT10x_P_F5 145.88 135.92 276650 437970 0 456950 1027600 756970 434620 362540 413110 265720 428530 257550 408740 28238 469310 970030 743780 471190 385610 421760 263500 412910 1 1 0 1 1 1 1 1 1 1 1 276650 437970 0 456950 1027600 756970 434620 362540 413110 265720 428530 257550 408740 28238 469310 970030 743780 471190 385610 421760 263500 412910 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 65110000 65110000 0 15165 3050 13900 78998 95480 95480 1 QDGQFSVLFTK Unmodified 1268.6401 0.6401021 41 CON__P12763 yes yes 0 0 0 0 By MS/MS By MS/MS 6.67 0.992 3 6 7 5 10 11 67.017 67.178 2;3 1.8005E-19 22138 20211116_3435_TMUAki_TMT10x_P_F7 236.22 189.77 + 199290000 336640000 282810 305280000 342920000 391300000 249740000 376080000 522490000 340400000 327730000 185540000 314000000 16782000 314940000 326350000 392980000 266640000 382080000 512700000 333930000 322180000 25 25 5 25 25 25 25 25 25 25 25 105430000 175100000 155450 158580000 198310000 318530000 162050000 192150000 270300000 176130000 168940000 98157000 163320000 9177000 165330000 189180000 311790000 169620000 201260000 266650000 172670000 166100000 14 14 3 14 14 14 14 14 14 14 14 93860000 161540000 127360 146710000 144610000 72767000 87692000 183940000 252190000 164280000 158800000 87386000 150680000 7604900 149610000 137170000 81189000 97018000 180820000 246050000 161250000 156080000 11 11 2 11 11 11 11 11 11 11 11 38131000000 20944000000 17188000000 15166 41 13901 78999;79000;79001;79002;79003;79004;79005;79006;79007;79008;79009;79010;79011;79012;79013;79014;79015;79016;79017;79018;79019 95481;95482;95483;95484;95485;95486;95487;95488;95489;95490;95491;95492;95493;95494;95495;95496;95497;95498;95499;95500;95501;95502;95503;95504;95505;95506;95507;95508;95509 95491 29 QDHAQQLATAAEER Unmodified 1566.7386 0.73864694 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By matching By MS/MS 2 0.816 1 1 1 1 2 31.261 31.021 3 4.7677E-19 9451 20211116_3441_TMUAki_TMT10x_S_F3 164.7 128.74 113030 174700 0 196110 97264 87160 134810 144930 150740 107110 165790 105220 163090 6694.3 196920 94046 96811 135270 143310 153190 106160 159470 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 113030 174700 0 196110 97264 87160 134810 144930 150740 107110 165790 105220 163090 6694.3 196920 94046 96811 135270 143310 153190 106160 159470 1 1 0 1 1 1 1 1 1 1 1 90065000 54620000 35445000 15167 1741 13902 79020;79021;79022 95510;95511 95511 2 QDHAQQLATAAEEREASLR Unmodified 2123.0356 0.035557244 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 38.48 38.365 3;4 1.7198E-12 12394 20211116_3441_TMUAki_TMT10x_S_F3 135.38 119.24 1647800 2464400 65824 3136800 2717300 2321300 1797100 2311600 2452200 1998600 2580800 1534700 2302100 212260 3140400 2586300 2414900 1891300 2341400 2470600 1964800 2485600 3 3 2 3 3 3 3 3 3 3 3 536970 738430 0 1003200 1556300 1340300 780900 826260 979000 641570 909950 499960 690020 58118 1009800 1472700 1333100 838770 860500 984840 634200 879940 1 1 0 1 1 1 1 1 1 1 1 1110800 1726000 65824 2133600 1161000 981040 1016200 1485300 1473200 1357000 1670800 1034800 1612000 154140 2130600 1113600 1081800 1052500 1480900 1485700 1330600 1605700 2 2 2 2 2 2 2 2 2 2 2 316590000 166740000 149840000 15168 1741 13903 79023;79024 95512;95513;95514 95514 3 QDHPSSMGVYGQESGGFSGPGENR Oxidation (M) 2495.0408 0.040778555 1489 Q01844;Q01844-6;Q01844-3;Q01844-5;Q01844-4 EWSR1 RNA-binding protein EWS yes no 0 0 1 0 By MS/MS 5 0 1 1 33.431 33.376 3 1.4304E-29 8054 20211116_3433_TMUAki_TMT10x_P_F5 172.37 165.34 88883 119880 653.48 219590 503050 356500 134140 186420 243920 130240 164810 82763 112230 13779 219020 473110 350910 158750 196440 240540 129510 161430 1 1 1 1 1 1 1 1 1 1 1 88883 119880 653.48 219590 503050 356500 134140 186420 243920 130240 164810 82763 112230 13779 219020 473110 350910 158750 196440 240540 129510 161430 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 77303000 77303000 0 15169 1489 13904 79025 95515 95515 2023 1 QDIARQK Unmodified 857.47191 0.47191456 3206 Q9UPN3;Q9UPN3-5;Q9UPN3-2;Q9UPN3-4;Q9UPN3-3 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 0 0 0 1 By MS/MS 5 0 1 1 26.363 26.288 3 0.081103 5259 20211116_3433_TMUAki_TMT10x_P_F5 43.124 1.2474 185740 292830 0 229320 183170 270350 183670 149640 193350 158340 219830 172900 273000 10264 239040 175320 270170 186580 158500 197210 154290 211240 1 1 0 1 1 1 1 1 1 1 1 185740 292830 0 229320 183170 270350 183670 149640 193350 158340 219830 172900 273000 10264 239040 175320 270170 186580 158500 197210 154290 211240 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1345200 1345200 0 15170 3206 13905 79026 95516 95516 1 QDLLTAAPASEIAEGLNLHTIR Unmodified 2332.2387 0.23867373 947 P36405 ARL3 ADP-ribosylation factor-like protein 3 yes yes 0 0 0 0 By MS/MS 7 0 2 2 74.717 74.932 3 6.1338E-13 25648 20211116_3435_TMUAki_TMT10x_P_F7 123.36 90.629 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15171 947 13906 79027;79028 95517;95518 95517 2 QDLMNIAGTTLSSK Unmodified 1477.7446 0.74464352 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 By MS/MS 8 0 1 1 67.259 67.171 3 0.016356 20583 20211116_3447_TMUAki_TMT10x_S_F8 49.049 34.891 3807200 7236900 129970 5941400 5427900 4615300 4142600 5185100 4496100 5299000 5351600 3545800 6748000 459460 6132900 5180100 4796400 4280200 5246500 4588900 5170600 5136000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3807200 7236900 129970 5941400 5427900 4615300 4142600 5185100 4496100 5299000 5351600 3545800 6748000 459460 6132900 5180100 4796400 4280200 5246500 4588900 5170600 5136000 1 1 1 1 1 1 1 1 1 1 1 279230000 0 279230000 15172 1429 13907 79029 95519 95519 1 QDLPALEEKPR Unmodified 1294.6881 0.68811492 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 1 By MS/MS 4 0 1 1 40.254 40.452 3 0.10922 10956 20211116_3442_TMUAki_TMT10x_S_F4 39.815 20.604 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15173 916 13908 79030 95520 95520 1 QDLPNAMNAAEITDKLGLHSLR Unmodified 2406.2325 0.23254249 1301 P61204;P84077;P61204-2 ARF3;ARF1 ADP-ribosylation factor 3;ADP-ribosylation factor 1 yes no 0 0 0 1 By MS/MS By matching 8 0 2 1 1 69.38 69.351 4 5.1967E-05 22026 20211116_3436_TMUAki_TMT10x_P_F8 74.222 60.39 2482700 5188000 36801 3379800 3630200 5830800 4279700 2549600 2262900 3081000 3535600 2311900 4834200 256200 3612300 3499400 5715100 4244700 2773700 2435500 2987200 3371300 1 1 1 1 1 1 1 1 1 1 1 2482700 5188000 36801 3379800 3630200 5830800 4279700 2549600 2262900 3081000 3535600 2311900 4834200 256200 3612300 3499400 5715100 4244700 2773700 2435500 2987200 3371300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1035200000 432350000 602830000 15174 1301 13909 79031;79032 95521 95521 1 QDLPSLDEKPR Unmodified 1296.6674 0.66737948 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 1 By MS/MS 4 0 1 1 40.116 40.314 3 0.002219 10902 20211116_3442_TMUAki_TMT10x_S_F4 69.795 44.578 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15175 2345 13910 79033 95522 95522 1 QDLSAIAR Unmodified 872.47158 0.4715802 3094 Q9UBW8 COPS7A COP9 signalosome complex subunit 7a yes yes 0 0 0 0 By MS/MS 4 0 1 1 37.247 37.383 2 0.035149 9864 20211116_3442_TMUAki_TMT10x_S_F4 61.962 12.247 221110 352150 3931.7 409460 215000 210640 240290 221430 225270 260760 318880 205910 328810 21910 410700 207030 227090 241950 225770 233150 253050 304720 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 221110 352150 3931.7 409460 215000 210640 240290 221430 225270 260760 318880 205910 328810 21910 410700 207030 227090 241950 225770 233150 253050 304720 1 1 1 1 1 1 1 1 1 1 1 13688000 0 13688000 15176 3094 13911 79034 95523 95523 1 QDLVISLLPYVLHPLVAK Unmodified 2017.1976 0.19758418 3096 Q9UDR5 AASS Alpha-aminoadipic semialdehyde synthase, mitochondrial;Lysine ketoglutarate reductase;Saccharopine dehydrogenase yes yes 0 0 0 0 By MS/MS 6 0 1 1 81.675 81.681 3 4.5709E-06 26766 20211116_3445_TMUAki_TMT10x_S_F6 91.475 80.204 673740 960120 0 913180 708320 685640 798630 558450 592450 598900 716520 627230 895720 45392 931500 680730 709660 798980 575430 616140 583250 687360 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 673740 960120 0 913180 708320 685640 798630 558450 592450 598900 716520 627230 895720 45392 931500 680730 709660 798980 575430 616140 583250 687360 1 1 0 1 1 1 1 1 1 1 1 102310000 0 102310000 15177 3096 13912 79035 95524 95524 1 QDMSISLAALELLSGLAK Oxidation (M) 1875.0023 0.002314771 2123 Q86X10;Q86X10-3;Q86X10-2;Q86X10-4 RALGAPB Ral GTPase-activating protein subunit beta yes no 0 0 1 0 By MS/MS 8 0 1 1 82.341 82.346 3 4.0259E-06 27390 20211116_3436_TMUAki_TMT10x_P_F8 92.671 75.986 486560 851300 13543 785400 557040 1125300 570440 772300 744420 767520 766760 453140 794110 53948 810970 535270 1117500 583310 802890 750500 749800 738970 1 1 1 1 1 1 1 1 1 1 1 486560 851300 13543 785400 557040 1125300 570440 772300 744420 767520 766760 453140 794110 53948 810970 535270 1117500 583310 802890 750500 749800 738970 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 58080000 58080000 0 15178 2123 13913 79036 95525 95525 2604 1 QDNLTIDTQYYLAQQIHPVVAR Unmodified 2585.3238 0.32380034 587 P09884 POLA1 DNA polymerase alpha catalytic subunit yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 68.043 68.479 3 4.0599E-21 23409 20211116_3446_TMUAki_TMT10x_S_F7 160.02 144.25 2004200 3939100 60107 3390900 2495400 4289000 2939000 3832300 2868200 3428700 3197400 1866600 3673600 229060 3511400 2407500 4303600 2955800 3907300 2932700 3365200 3074200 2 2 2 2 2 2 2 2 2 2 2 1108000 1803600 894.04 1609400 1028500 2723200 1435300 2008800 1402600 1681900 1497900 1031700 1682300 91583 1672300 996430 2689500 1433600 2068700 1431700 1656100 1442000 1 1 1 1 1 1 1 1 1 1 1 896170 2135500 59213 1781400 1466900 1565800 1503800 1823400 1465600 1746800 1699500 834860 1991300 137480 1839100 1411100 1614200 1522200 1838600 1501000 1709100 1632200 1 1 1 1 1 1 1 1 1 1 1 826590000 351440000 475150000 15179 587 13914 79037;79038 95526;95527 95527 2 QDPSVLHTEEMR Oxidation (M) 1456.6616 0.66164217 1137 P50502;Q8NFI4 ST13;ST13P5 Hsc70-interacting protein;Putative protein FAM10A5 yes no 0 0 1 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 30.229 29.983 3 1.5841E-07 7524 20211116_3429_TMUAki_TMT10x_P_F2 129.77 113.24 261780 434040 3258.6 531610 489880 531320 364770 262250 308590 284580 427910 243690 405370 18120 535430 466130 535250 374800 280890 320630 277010 409090 2 2 1 2 2 2 2 2 2 2 2 186470 314860 0 399500 419990 469590 286370 191990 231730 222110 316700 173540 294120 8915.5 402620 398710 467820 295770 210120 241160 215680 302880 1 1 0 1 1 1 1 1 1 1 1 75311 119180 3258.6 132110 69890 61732 78399 70257 76857 62467 111210 70146 111260 9204.8 132810 67425 67421 79030 70769 79475 61330 106220 1 1 1 1 1 1 1 1 1 1 1 60599000 46412000 14187000 15180 1137 13915 79039;79040 95528;95529 95528 1502 2 QDPSVLHTEEMR Unmodified 1440.6667 0.66672755 1137 P50502;Q8NFI4 ST13;ST13P5 Hsc70-interacting protein;Putative protein FAM10A5 yes no 0 0 0 0 By MS/MS 2 0 1 1 33.507 33.284 3 0.0011565 8808 20211116_3429_TMUAki_TMT10x_P_F2 68.972 61.047 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15181 1137 13915 79041 95530 95530 1 QDQPIDFSEDARPSPCYQLAQR Unmodified 2620.1976 0.19761355 2437 Q96DV4;Q96DV4-2 MRPL38 39S ribosomal protein L38, mitochondrial yes no 0 0 0 1 By MS/MS 4 0 1 1 51.472 51.579 3 2.9034E-05 15457 20211116_3442_TMUAki_TMT10x_S_F4 74.222 66.945 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15182 2437 13916 79042 95531 95531 1 QDSLVINLNR Unmodified 1170.6357 0.63568542 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 0 0 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 49.739 49.904 2 1.0677E-08 13760 20211116_3445_TMUAki_TMT10x_S_F6 135.72 106.77 18027000 27378000 19624 34154000 24722000 26086000 18923000 18480000 19834000 18460000 22149000 16784000 25572000 1541400 34244000 23555000 26902000 19526000 19173000 20220000 18029000 21295000 4 4 3 4 4 4 4 4 4 4 4 10161000 15219000 5307.4 19005000 17577000 19743000 11726000 10232000 11229000 10418000 12083000 9460500 14215000 886010 19132000 16703000 19854000 12185000 10889000 11476000 10167000 11630000 2 2 1 2 2 2 2 2 2 2 2 7865500 12159000 14316 15150000 7144800 6343100 7197400 8248000 8604900 8041300 10065000 7323600 11357000 655350 15112000 6853000 7047900 7341500 8283600 8744300 7862000 9664600 2 2 2 2 2 2 2 2 2 2 2 1904300000 991110000 913160000 15183 3317 13917 79043;79044;79045;79046;79047 95532;95533;95534;95535;95536 95536 5 QDVDLCLVSSCEYK Unmodified 1714.7542 0.75422193 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 60.813 60.935 3 0.00034719 18856 20211116_3431_TMUAki_TMT10x_P_F4 69.729 57.563 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15184 1057 13918 79048 95537 95537 1 QEAIDRFNAPGAQQFCFLLSTR Unmodified 2568.2543 0.25434057 1735;1571 Q14839;Q14839-2;Q8TDI0;Q12873;Q12873-3;Q12873-2 CHD4;CHD5;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3 no no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 1 3 73.468 73.294 3 2.8841E-83 23771 20211116_3440_TMUAki_TMT10x_S_F2 287.25 262.84 19544000 31166000 129490 30675000 25909000 25006000 22288000 19113000 15801000 19234000 22245000 18197000 29079000 1692500 31244000 24751000 25692000 22597000 19734000 16587000 18780000 21259000 6 6 3 6 6 6 6 6 6 6 6 6519100 10133000 19423 10110000 6142000 11011000 6988600 6610500 5600800 6298700 7117600 6069100 9455400 442230 10329000 5904500 11063000 7001600 6933900 5812400 6164500 6819200 2 2 1 2 2 2 2 2 2 2 2 13025000 21033000 110060 20565000 19767000 13995000 15300000 12502000 10200000 12936000 15127000 12128000 19624000 1250200 20915000 18846000 14629000 15595000 12800000 10775000 12616000 14440000 4 4 2 4 4 4 4 4 4 4 4 2244400000 1099600000 1144800000 15185 1735;1571 13919 79049;79050;79051;79052 95538;95539;95540;95541;95542;95543;95544 95542 7 QEATRQDHAQQLATAAEER Unmodified 2152.0257 0.025720839 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 29.768 29.521 4 4.6942E-05 7384 20211116_3429_TMUAki_TMT10x_P_F2 80.156 64.391 157100 233730 0 274290 287780 255130 180900 153150 193570 139560 215500 146260 218250 7422.2 276670 273120 258800 189480 160450 197150 136860 207200 2 2 0 2 2 2 2 2 2 2 2 88680 140390 0 158910 238070 188730 112570 98393 110040 87215 145490 82553 131070 7422.2 161250 224990 188390 120670 104260 113320 85639 139260 1 1 0 1 1 1 1 1 1 1 1 68423 93342 0 115380 49712 66404 68338 54753 83534 52346 70001 63709 87180 0 115410 48135 70407 68814 56185 83836 51223 67946 1 1 0 1 1 1 1 1 1 1 1 29119000 18227000 10892000 15186 1741 13920 79053;79054 95545;95546 95545 2 QEAVSMIPPLLLNVRPHHK Oxidation (M) 2194.2045 0.20447725 1552 Q08J23;Q08J23-2 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 0 0 1 1 By matching By MS/MS 3 0 2 1 1 51.71 51.463 5 2.5887E-08 17704 20211116_3441_TMUAki_TMT10x_S_F3 108.56 87.552 918720 1805300 0 1575000 803900 911660 1045800 1570000 1782800 1361400 1387600 855400 1683700 71989 1613100 776730 984450 1070900 1556800 1767400 1338200 1350800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 918720 1805300 0 1575000 803900 911660 1045800 1570000 1782800 1361400 1387600 855400 1683700 71989 1613100 776730 984450 1070900 1556800 1767400 1338200 1350800 1 1 0 1 1 1 1 1 1 1 1 387440000 195860000 191590000 15187 1552 13921 79055;79056 95547 95547 2091 1 QEDGSLCLVQFPSRK Unmodified 1762.8672 0.86721827 570 P09132 SRP19 Signal recognition particle 19 kDa protein yes yes 0 0 0 1 By MS/MS 6 0 1 1 52.578 52.677 3 7.6842E-29 14540 20211116_3434_TMUAki_TMT10x_P_F6 183.31 167.69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15188 570 13922 79057 95548 95548 1 QEDKDDLDVTELTNEDLLDQLVK Unmodified 2687.3025 0.30251535 1006;1007 P42166;P42167;P42167-2;P42167-3 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 0 1 By MS/MS By MS/MS 1.87 0.618 4 9 2 10 5 49.795 49.709 3;4 1.6982E-36 4988 20211116_3429_TMUAki_TMT10x_P_F2 191.79 166.96 46242000 75578000 282370 69064000 52411000 66322000 60709000 46877000 50448000 52233000 57629000 43053000 70498000 3443500 70876000 50432000 67296000 60828000 48803000 52026000 50793000 55371000 19 19 6 19 19 19 19 19 19 19 19 18294000 28257000 77999 25444000 17811000 31936000 21666000 17311000 18713000 19474000 20902000 17028000 26357000 900290 26253000 17136000 31805000 21683000 18403000 19244000 18931000 20096000 10 10 3 10 10 10 10 10 10 10 10 27949000 47320000 204370 43620000 34600000 34386000 39044000 29566000 31735000 32759000 36727000 26024000 44141000 2543200 44622000 33296000 35491000 39145000 30400000 32782000 31862000 35275000 9 9 3 9 9 9 9 9 9 9 9 10602000000 6474400000 4127900000 15189 1006;1007 13923 79058;79059;79060;79061;79062;79063;79064;79065;79066;79067;79068;79069;79070;79071;79072 95549;95550;95551;95552;95553;95554;95555;95556;95557;95558;95559;95560;95561;95562;95563;95564;95565;95566;95567 95553 19 QEDVIATANLSR Unmodified 1315.6732 0.67319314 3293 Q9Y490;Q9Y4G6 TLN1;TLN2 Talin-1;Talin-2 yes no 0 0 0 0 By MS/MS By MS/MS 3.43 0.495 4 3 3 4 41.887 41.932 2;3 6.8803E-29 13971 20211116_3441_TMUAki_TMT10x_S_F3 240.8 186.74 1603500 2564800 3158.3 2846500 2913000 2743500 1937500 2074900 2202000 1769400 2301300 1492900 2394300 145110 2882500 2768200 2786200 2024500 2134200 2232200 1740600 2216900 3 3 1 3 3 3 3 3 3 3 3 791430 1268900 3158.3 1398200 2086200 1999000 1071600 1164200 1221000 897360 1137100 736920 1184500 86363 1426200 1975000 1980700 1144600 1217800 1232600 887410 1099500 2 2 1 2 2 2 2 2 2 2 2 812020 1295900 0 1448400 826760 744450 865900 910660 981070 872000 1164200 756000 1209700 58743 1456300 793150 805550 879840 916350 999530 853230 1117400 1 1 0 1 1 1 1 1 1 1 1 198150000 75953000 122200000 15190 3293 13924 79073;79074;79075;79076;79077;79078;79079 95568;95569;95570;95571;95572 95571 5 QEEELQAKDEELLK Unmodified 1700.8469 0.84685999 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 1 By MS/MS 2 0.816 1 1 1 3 51.193 51.073 3 5.1347E-10 16037 20211116_3429_TMUAki_TMT10x_P_F2 138.91 111.88 5606400 8042600 128680 11741000 17594000 14866000 8067800 7784800 8664600 6632800 7693900 5221100 7518400 752640 11764000 16638000 14792000 8700100 8238000 8754200 6525400 7452100 3 3 3 3 3 3 3 3 3 3 3 5606400 8042600 128680 11741000 17594000 14866000 8067800 7784800 8664600 6632800 7693900 5221100 7518400 752640 11764000 16638000 14792000 8700100 8238000 8754200 6525400 7452100 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 654180000 654180000 0 15191 935 13925 79080;79081;79082 95573;95574;95575 95575 3 QEEEQDLDGEKGPSSEGPEEEDGEGFSFK Unmodified 3184.3116 0.31163607 1458 P84157;P84157-2;P84157-3 MXRA7 Matrix-remodeling-associated protein 7 yes no 0 0 0 1 By MS/MS 1 0 1 1 56.532 56.532 4 4.1752E-13 16741 20211116_3428_TMUAki_TMT10x_P_F1 112.8 106.7 1874500 3554700 13609 3211300 3491900 6133000 3389500 3405800 3551600 3523500 2936500 1745200 3315700 156120 3344000 3344200 6006300 3448500 3603900 3584200 3436400 2851700 2 2 1 2 2 2 2 2 2 2 2 1874500 3554700 13609 3211300 3491900 6133000 3389500 3405800 3551600 3523500 2936500 1745200 3315700 156120 3344000 3344200 6006300 3448500 3603900 3584200 3436400 2851700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 996250000 996250000 0 15192 1458 13926 79083 95576;95577 95576 2 QEESITVQTMMNTLR 2 Oxidation (M) 1811.8393 0.83934854 1561 Q12765;Q12765-2;Q12765-3 SCRN1 Secernin-1 yes no 0 0 2 0 By MS/MS 3 0 1 1 38.793 38.522 3 0.0044202 12425 20211116_3441_TMUAki_TMT10x_S_F3 60.158 38.907 380080 606440 15591 870430 290620 270380 317060 496740 486440 452310 566160 354010 566860 44788 860360 280270 317540 325470 492300 490290 443580 543680 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 380080 606440 15591 870430 290620 270380 317060 496740 486440 452310 566160 354010 566860 44788 860360 280270 317540 325470 492300 490290 443580 543680 1 1 1 1 1 1 1 1 1 1 1 46362000 0 46362000 15193 1561 13927 79084 95578 95578 2107;2108 1 QEGIEVCALQNEFLGK Unmodified 1833.8931 0.89309867 3206 Q9UPN3;Q9UPN3-5 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 0 0 0 0 By MS/MS 7 0 1 1 62.012 62.488 3 0.11014 20835 20211116_3446_TMUAki_TMT10x_S_F7 18.138 2.0156 2625400 4809500 13109 4347400 2709700 2915100 2540700 4002700 3309400 2901100 3663100 2444600 4486100 231060 4446300 2594700 3082500 2609800 3981800 3345700 2878700 3522700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2625400 4809500 13109 4347400 2709700 2915100 2540700 4002700 3309400 2901100 3663100 2444600 4486100 231060 4446300 2594700 3082500 2609800 3981800 3345700 2878700 3522700 1 1 1 1 1 1 1 1 1 1 1 862020000 0 862020000 15194 3206 13928 79085 95579 95579 1 QEGLDGGLPEEVLFGNLDLLPPPGK Unmodified 2603.3483 0.34828376 2181 Q8N163;Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.667 4 4 1 5 4 81.681 81.664 3;4 5.0744E-12 28422 20211116_3429_TMUAki_TMT10x_P_F2 115.88 106.13 10707000 17397000 118430 16693000 11957000 16974000 13139000 10072000 11007000 11494000 12896000 9970300 16231000 978270 17084000 11499000 17119000 13200000 10631000 11358000 11167000 12382000 9 9 7 9 9 9 9 9 9 9 9 7564600 12249000 94109 11516000 7277700 13203000 8371100 6988500 7656700 7816200 8750100 7043900 11427000 688570 11826000 7009900 13206000 8411900 7443900 7859500 7599600 8407100 5 5 4 5 5 5 5 5 5 5 5 3142900 5148100 24325 5177000 4679100 3771300 4767700 3083500 3350400 3677300 4146000 2926400 4803900 289700 5258300 4489300 3913200 4787600 3187600 3498700 3567000 3974800 4 4 3 4 4 4 4 4 4 4 4 3453800000 2281000000 1172800000 15195 2181 13929 79086;79087;79088;79089;79090;79091;79092;79093;79094 95580;95581;95582;95583;95584;95585;95586;95587;95588;95589;95590 95581 11 QEKPAEKPAETPVATSPTATDSTSGDSSR Unmodified 2944.3898 0.38976723 1227 P54727;P54727-2 RAD23B UV excision repair protein RAD23 homolog B yes no 0 0 0 2 By MS/MS 4.5 0.5 1 1 2 33.282 33.267 4 5.508E-18 7726 20211116_3431_TMUAki_TMT10x_P_F4 125.39 118.12 219240 350900 4258.5 433270 1251500 632120 267470 264300 379520 223090 379090 204170 327740 36603 439160 1175500 623440 326230 286060 381180 219580 365710 1 1 1 1 1 1 1 1 1 1 1 219240 350900 4258.5 433270 1251500 632120 267470 264300 379520 223090 379090 204170 327740 36603 439160 1175500 623440 326230 286060 381180 219580 365710 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 194740000 194740000 0 15196 1227 13930 79095;79096 95591 95591 1 QELSFAAR Unmodified 920.47158 0.4715802 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 38.45 38.549 2 0.0020018 9973 20211116_3442_TMUAki_TMT10x_S_F4 114.89 46.512 3446500 4984500 10663 5761100 4896200 4578200 3802600 3176200 3528500 2936400 4264600 3209000 4653900 292300 5804700 4666300 4705500 3905900 3292900 3627800 2877800 4091100 4 4 1 4 4 4 4 4 4 4 4 1902900 2591900 0 2991300 3807500 3379400 2177800 1779000 1953100 1533000 2247700 1771700 2420000 174090 3029200 3609200 3382800 2287300 1882200 2007200 1507400 2159100 1 1 0 1 1 1 1 1 1 1 1 1543600 2392600 10663 2769800 1088700 1198800 1624900 1397200 1575400 1403400 2017000 1437200 2234000 118200 2775500 1057100 1322700 1618600 1410700 1620600 1370400 1932000 3 3 1 3 3 3 3 3 3 3 3 124490000 71321000 53164000 15197 1092 13931 79097;79098;79099 95592;95593;95594;95595;95596 95595 5 QELSHALYQHDAACR Unmodified 1797.8217 0.82166506 3182 Q9UMS4 PRPF19 Pre-mRNA-processing factor 19 yes yes 0 0 0 0 By MS/MS 4.5 0.5 2 2 4 32.295 32.28 3;4 7.6114E-24 7576 20211116_3433_TMUAki_TMT10x_P_F5 185.14 170.54 3834000 5932800 24354 6474100 9240100 8241600 4804500 3866800 4326600 3223000 5303700 3569500 5537900 360980 6592900 8746200 8188700 5090500 4133000 4457200 3174300 5086100 6 6 3 6 6 6 6 6 6 6 6 3834000 5932800 24354 6474100 9240100 8241600 4804500 3866800 4326600 3223000 5303700 3569500 5537900 360980 6592900 8746200 8188700 5090500 4133000 4457200 3174300 5086100 6 6 3 6 6 6 6 6 6 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 675410000 675410000 0 15198 3182 13932 79100;79101;79102;79103 95597;95598;95599;95600;95601;95602 95600 6 QELTSQAERAEELGQELK Unmodified 2058.0229 0.022926872 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 2.67 1.11 1 2 1 2 3 3 59.509 59.36 3 1.1063E-40 20956 20211116_3441_TMUAki_TMT10x_S_F3 208.47 177.08 37161000 62960000 376360 64409000 49642000 64301000 44309000 48518000 45628000 45416000 51133000 34602000 58754000 3440700 65604000 47477000 65158000 45265000 50034000 46556000 44483000 49155000 8 8 5 8 8 8 8 8 8 8 8 23747000 39994000 243060 40323000 33554000 51717000 31790000 30681000 28783000 29100000 32994000 22112000 37320000 2244800 41283000 32138000 51511000 32245000 32209000 29563000 28486000 31698000 5 5 3 5 5 5 5 5 5 5 5 13414000 22966000 133300 24086000 16088000 12584000 12519000 17837000 16845000 16316000 18138000 12490000 21434000 1195900 24320000 15339000 13647000 13019000 17825000 16993000 15997000 17457000 3 3 2 3 3 3 3 3 3 3 3 2729000000 1601300000 1127700000 15199 1741 13933 79104;79105;79106;79107;79108;79109 95603;95604;95605;95606;95607;95608;95609;95610 95608 8 QEMQEVQSSR Unmodified 1220.5455 0.54554978 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 29.234 29.13 2 1.6262E-09 7208 20211116_3429_TMUAki_TMT10x_P_F2 185.33 150.18 392620 614760 7.3048 563710 417360 384550 399380 122300 168580 177130 372970 365560 573450 25052 576000 399670 396910 398900 139220 188850 170740 353460 3 3 1 3 3 3 3 3 3 3 3 215770 318010 0 313390 237090 273590 214930 64021 95462 96680 201160 200900 296720 17151 319440 226710 276460 215470 76646 106090 93077 190780 1 1 0 1 1 1 1 1 1 1 1 176840 296750 7.3048 250310 180270 110960 184450 58279 73116 80454 171800 164660 276720 7900.9 256560 172960 120450 183430 62576 82756 77662 162680 2 2 1 2 2 2 2 2 2 2 2 22730000 12974000 9755700 15200 772 13934 79110;79111;79112;79113 95611;95612;95613 95611 3 QEPERNECFLSHKDDSPDLPK Unmodified 2540.1602 0.16016541 38 CON__P02769 yes yes 0 0 0 2 By MS/MS By MS/MS 4.2 1.08 1 1 4 3 1 6 4 37.988 37.976 4;5 1.8027E-26 10437 20211116_3431_TMUAki_TMT10x_P_F4 173.09 154.82 + 24773000 30915000 211600 37948000 92149000 62149000 45314000 81907000 106020000 61432000 48989000 23060000 28873000 2263100 38578000 87131000 62265000 50292000 81668000 103180000 60841000 49023000 15 15 8 15 15 15 15 15 15 15 15 19892000 24214000 168780 29061000 88541000 60014000 43095000 62710000 83046000 47025000 38129000 18516000 22612000 1895700 29767000 83708000 59290000 47326000 63154000 81143000 46573000 38173000 10 10 5 10 10 10 10 10 10 10 10 4881100 6700700 42821 8887000 3608200 2135000 2219100 19197000 22977000 14407000 10859000 4544600 6260700 367360 8810800 3423500 2974900 2966200 18514000 22037000 14268000 10851000 5 5 3 5 5 5 5 5 5 5 5 7181200000 5571400000 1609800000 15201 38 13935 79114;79115;79116;79117;79118;79119;79120;79121;79122;79123 95614;95615;95616;95617;95618;95619;95620;95621;95622;95623;95624;95625;95626;95627;95628 95616 15 QEPEVNGGSGDAVPSGNEVSENMEEEAENQAESR Oxidation (M) 3590.4823 0.4823 1091 P49321;P49321-3;P49321-4;P49321-2 NASP Nuclear autoantigenic sperm protein yes no 0 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 43.427 43.328 4 2.8812E-23 13309 20211116_3439_TMUAki_TMT10x_S_F1 123.62 119.07 864720 1513300 2329.9 1900000 1369500 1792200 930110 1616700 1873300 1137600 1382200 805010 1413500 63353 1909400 1301100 1828500 995620 1638300 1847100 1130800 1348600 4 4 1 4 4 4 4 4 4 4 4 505750 812940 0 1035800 1143500 1583500 775370 935780 1043800 608950 775080 470770 759390 33411 1049100 1086100 1564800 814050 974340 1040600 608200 756010 2 2 0 2 2 2 2 2 2 2 2 358960 700390 2329.9 864150 226000 208740 154740 680970 829550 528630 607160 334250 654150 29941 860210 215040 263690 181580 663970 806510 522570 592590 2 2 1 2 2 2 2 2 2 2 2 482010000 295080000 186930000 15202 1091 13936 79124;79125 95629;95630;95631;95632 95631 1415 4 QEPLLIGSTK Unmodified 1084.6128 0.61282471 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS 5 0 1 1 50.063 50.247 2 0.00013795 13625 20211116_3444_TMUAki_TMT10x_S_F5 93.345 7.5379 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15203 1092 13937 79126 95633 95633 1 QEQHEAQAQVAELELQLR Unmodified 2119.0658 0.065794739 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By MS/MS 1.5 0.5 1 1 2 53.983 53.983 3 4.5804E-22 17228 20211116_3429_TMUAki_TMT10x_P_F2 148.19 130.49 1205100 1715400 0 2149500 1656300 2534300 1701700 1533500 1546600 1432700 1361100 1121800 1602300 66037 2167900 1586700 2535600 1718900 1606600 1573600 1403400 1318800 1 1 0 1 1 1 1 1 1 1 1 1205100 1715400 0 2149500 1656300 2534300 1701700 1533500 1546600 1432700 1361100 1121800 1602300 66037 2167900 1586700 2535600 1718900 1606600 1573600 1403400 1318800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 390500000 390500000 0 15204 1741 13938 79127;79128 95634;95635 95635 2 QEQINCVTREPLTADEEEALKQEHQR Unmodified 3150.5 0.50000316 2929 Q9NRL2;Q9NRL2-2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 0 0 0 2 By MS/MS 2.5 0.5 1 1 2 43.026 42.872 5 3.8582E-06 14246 20211116_3441_TMUAki_TMT10x_S_F3 79.9 65.884 596480 1157700 2114.9 1381400 504640 666510 503240 1120100 1097100 1070500 997720 555400 1081100 50137 1382700 483960 733280 528910 1114500 1086600 1047500 965540 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 596480 1157700 2114.9 1381400 504640 666510 503240 1120100 1097100 1070500 997720 555400 1081100 50137 1382700 483960 733280 528910 1114500 1086600 1047500 965540 1 1 1 1 1 1 1 1 1 1 1 165930000 0 165930000 15205 2929 13939 79129;79130 95636 95636 1 QERPPVKPFILTR Unmodified 1579.9198 0.91984619 1425 P78318 IGBP1 Immunoglobulin-binding protein 1 yes yes 0 0 0 2 By MS/MS By MS/MS 3 0 2 1 1 41.38 41.249 4 4.0972E-05 13815 20211116_3441_TMUAki_TMT10x_S_F3 100.43 81.032 630360 969090 5098.4 1191500 787230 690400 553770 835450 819090 683340 859420 586930 905090 54768 1192300 748980 737500 582130 837560 823110 673650 827800 2 2 1 2 2 2 2 2 2 2 2 206220 284260 0 363000 387270 363690 222130 204080 211520 171550 250890 191980 265540 15191 364770 366890 366880 233630 214570 217040 168890 240810 1 1 0 1 1 1 1 1 1 1 1 424140 684830 5098.4 828460 399960 326710 331630 631380 607580 511790 608530 394950 639560 39577 827510 382090 370630 348500 622980 606060 504770 586990 1 1 1 1 1 1 1 1 1 1 1 65433000 13814000 51619000 15206 1425 13940 79131;79132 95637;95638 95638 2 QETVAQAALLTEREER Unmodified 1842.9436 0.94355434 2700 Q9BW19 KIFC1 Kinesin-like protein KIFC1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 43.509 43.419 3 7.752E-43 14505 20211116_3441_TMUAki_TMT10x_S_F3 228.46 188.39 1526400 2598700 26584 3016600 2324300 2198800 1640500 2178200 2565600 1961500 2235700 1421400 2426500 162500 3035700 2213100 2290000 1728400 2209200 2557900 1924600 2166900 4 4 4 4 4 4 4 4 4 4 4 675570 1150700 1931 1375500 1721500 1570800 1046200 877540 1083800 776700 981320 629040 1074600 72458 1390300 1633800 1572600 1097700 924190 1097300 762720 949820 2 2 2 2 2 2 2 2 2 2 2 850840 1448000 24653 1641000 602850 628050 594250 1300600 1481800 1184800 1254400 792400 1351900 90043 1645300 579320 717410 630700 1285000 1460500 1161900 1217100 2 2 2 2 2 2 2 2 2 2 2 99452000 36720000 62732000 15207 2700 13941 79133;79134;79135 95639;95640;95641;95642 95642 4 QEVPSWLENMAYEHHYK Oxidation (M) 2175.9684 0.96838888 104 O00571;O00571-2;O15523;O15523-2 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 1 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 51.037 51.181 4 2.4551E-05 13998 20211116_3444_TMUAki_TMT10x_S_F5 82.877 73.128 7725400 13101000 89016 11200000 16894000 17851000 10403000 19088000 19257000 14319000 14228000 7193600 12218000 826690 11659000 16039000 17803000 11166000 19202000 19025000 14182000 13881000 2 2 1 2 2 2 2 2 2 2 2 4239500 6999000 0 6230100 12328000 14000000 7470800 9284100 8674400 7368100 6898600 3947200 6527900 439600 6526300 11697000 13677000 7869200 9620100 8709000 7275000 6709800 1 1 0 1 1 1 1 1 1 1 1 3485900 6102300 89016 4969500 4566000 3851000 2932400 9804100 10583000 6951400 7329900 3246400 5689900 387090 5133000 4342400 4125900 3296700 9582300 10316000 6906600 7171600 1 1 1 1 1 1 1 1 1 1 1 697580000 424430000 273150000 15208 104 13942 79136;79137 95643;95644 95644 85 2 QEYDESGPSIVHR Unmodified 1515.6954 0.69538514 1276;1406;595 P60709;Q6S8J3;A5A3E0;P0CG38;Q9BYX7;P63261;P0CG39 ACTB;POTEE;POTEF;POTEI;POTEKP;ACTG1;POTEJ Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;POTE ankyrin domain family member J no no 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 1 1 1 1 3 1 32.675 32.564 3 3.1424E-36 8492 20211116_3429_TMUAki_TMT10x_P_F2 263.89 251.13 1266200 2030000 36679 2314200 3035500 2987800 1764400 1492600 1920900 1448200 1834500 1179300 1895300 163940 2350800 2880800 2968600 1861000 1591700 1944300 1416200 1772400 4 4 4 4 4 4 4 4 4 4 4 1067800 1718600 33838 1910600 2875800 2771400 1549700 1277300 1636900 1238700 1560900 994470 1604400 145390 1948400 2726200 2736600 1644000 1372900 1658700 1211300 1508100 3 3 3 3 3 3 3 3 3 3 3 198440 311350 2841.3 403620 159650 216360 214700 215270 284000 209520 273670 184790 290870 18557 402440 154640 231940 217040 218750 285520 204870 264320 1 1 1 1 1 1 1 1 1 1 1 222590000 182070000 40517000 15209 1276;1406;595 13943 79138;79139;79140;79141 95645;95646;95647;95648 95646 4 QEYDESGPSIVHRK Unmodified 1643.7903 0.79034816 1276;1406;595 P60709;Q6S8J3;A5A3E0;P0CG38;Q9BYX7;P63261;P0CG39 ACTB;POTEE;POTEF;POTEI;POTEKP;ACTG1;POTEJ Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;POTE ankyrin domain family member J no no 0 0 0 1 By MS/MS 4.67 0.471 1 2 3 31.6 31.567 3;4 1.3934E-23 7318 20211116_3433_TMUAki_TMT10x_P_F5 190.19 175.5 2111300 3491300 30323 3890300 5873300 4355800 2495500 1858100 2622700 1752600 2718300 1966000 3259200 255990 3947500 5548500 4352500 2711800 2012100 2666000 1716000 2619300 3 3 3 3 3 3 3 3 3 3 3 2111300 3491300 30323 3890300 5873300 4355800 2495500 1858100 2622700 1752600 2718300 1966000 3259200 255990 3947500 5548500 4352500 2711800 2012100 2666000 1716000 2619300 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 469890000 469890000 0 15210 1276;1406;595 13944 79142;79143;79144 95649;95650;95651 95651 3 QFAFVHMR Oxidation (M) 1050.5069 0.50691985 2534 Q96PK6;Q96PK6-2;Q96PK6-3;Q96PK6-4 RBM14 RNA-binding protein 14 no no 0 0 1 0 By MS/MS 1 0 1 1 35.036 35.001 3 0.022228 9950 20211116_3439_TMUAki_TMT10x_S_F1 56.659 38.623 237800 404800 5628.7 405150 250370 221970 242090 327920 334360 252130 342060 221460 377720 25137 410560 240200 239800 248850 325790 336390 249370 329740 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 237800 404800 5628.7 405150 250370 221970 242090 327920 334360 252130 342060 221460 377720 25137 410560 240200 239800 248850 325790 336390 249370 329740 1 1 1 1 1 1 1 1 1 1 1 38229000 0 38229000 15211 2534 13945 79145 95652 95652 2790 1 QFCSTQAALQAMER Oxidation (M) 1655.7396 0.73957492 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 1 0 By matching By MS/MS 5.33 0.471 2 1 1 2 39.423 39.529 3 0.0042849 9114 20211116_3445_TMUAki_TMT10x_S_F6 60.631 52.902 868900 1584800 40216 1928400 864120 784560 856990 1232600 1371400 1038000 1432200 809330 1480000 109450 1925900 830820 879880 885580 1224700 1374900 1021800 1379700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 868900 1584800 40216 1928400 864120 784560 856990 1232600 1371400 1038000 1432200 809330 1480000 109450 1925900 830820 879880 885580 1224700 1374900 1021800 1379700 2 2 2 2 2 2 2 2 2 2 2 141950000 114410000 27540000 15212 1741 13946 79146;79147;79148 95653;95654 95654 2351 2 QFCTGEFRK Unmodified 1171.5444 0.54442757 217 O43447 PPIH Peptidyl-prolyl cis-trans isomerase H yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 37.328 37.699 3 0.051424 8493 20211116_3447_TMUAki_TMT10x_S_F8 51.762 32.447 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15213 217 13947 79149;79150 95655;95656 95656 2 QFDNYGEEFTMHDTIGCYLDIDKGHVK Oxidation (M) 3247.4227 0.42266404 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 1 1 By MS/MS By MS/MS 5.25 0.829 1 1 2 1 3 64.497 64.465 5 2.9739E-18 19410 20211116_3434_TMUAki_TMT10x_P_F6 138.02 131.99 4573900 9609200 61115 7042300 6035300 14122000 5732400 7206400 6500100 8140600 6535400 4259200 8956800 449180 7471500 5782500 13795000 5854200 7704000 6580400 7912000 6303300 2 2 1 2 2 2 2 2 2 2 2 2789600 5715400 0 3586500 3320700 10929000 3568700 4454900 3831900 5158500 3746000 2597400 5325100 231270 3919000 3189800 10536000 3615000 4877200 3883700 5009000 3616300 1 1 0 1 1 1 1 1 1 1 1 1784300 3893700 61115 3455800 2714600 3193300 2163700 2751600 2668200 2982100 2789400 1661800 3631600 217920 3552500 2592700 3259300 2239200 2826800 2696700 2903000 2687100 1 1 1 1 1 1 1 1 1 1 1 3819200000 1192600000 2626600000 15214 2334 13948 79151;79152;79153;79154 95657;95658 95657 2683 2 QFDNYGEEFTMHDTIGCYLDIDKGHVK Unmodified 3231.4277 0.42774942 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 1 By MS/MS 6 0 1 1 68.811 68.775 5 0.094594 21125 20211116_3434_TMUAki_TMT10x_P_F6 32.98 23.518 5163700 8515300 57874 7129000 6335500 12394000 6968100 7443400 7872300 7765300 7069500 4808400 7940500 498460 7449400 6094200 12190000 7063000 7827400 7940700 7570700 6844500 1 1 1 1 1 1 1 1 1 1 1 5163700 8515300 57874 7129000 6335500 12394000 6968100 7443400 7872300 7765300 7069500 4808400 7940500 498460 7449400 6094200 12190000 7063000 7827400 7940700 7570700 6844500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 896370000 896370000 0 15215 2334 13948 79155 95659 95659 1 QFEDELHPDLK Unmodified 1369.6514 0.65139506 3273 Q9Y3C6 PPIL1 Peptidyl-prolyl cis-trans isomerase-like 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 48.786 48.562 3 5.7202E-06 16540 20211116_3441_TMUAki_TMT10x_S_F3 113.99 80.579 4863100 7704000 68229 9255200 11339000 10585000 6691600 8513100 8643400 9043400 8010500 4528500 7194400 557470 9352100 10760000 10654000 7091000 8776000 8685400 8810400 7747000 3 3 3 3 3 3 3 3 3 3 3 3330100 5307100 61790 6420600 10067000 9351000 5588400 5951300 5813000 6502800 5596400 3101200 4956200 428030 6515200 9543500 9269000 5909700 6238900 5896200 6328200 5405300 2 2 2 2 2 2 2 2 2 2 2 1533000 2396900 6439.7 2834600 1272500 1233700 1103200 2561800 2830500 2540700 2414100 1427400 2238200 129450 2836900 1216200 1385400 1181300 2537000 2789100 2482200 2341700 1 1 1 1 1 1 1 1 1 1 1 680480000 513730000 166740000 15216 3273 13949 79156;79157;79158 95660;95661;95662 95662 3 QFESLPATHIR Unmodified 1297.6779 0.67788459 384 O94776 MTA2 Metastasis-associated protein MTA2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 38.466 38.512 3 0.00023086 9060 20211116_3444_TMUAki_TMT10x_S_F5 86.114 63.883 1439200 2219800 56033 2522100 2697900 2831100 1695100 2334900 2132400 1970500 2057900 1340500 2072400 189170 2556300 2565100 2853900 1785300 2388100 2147600 1939500 1987400 3 3 3 3 3 3 3 3 3 3 3 1117200 1715300 43198 1922600 2357900 2543000 1365700 1818000 1671600 1542700 1558700 1040600 1601400 150260 1956000 2238600 2536100 1446600 1876700 1683200 1518000 1507100 2 2 2 2 2 2 2 2 2 2 2 321990 504480 12835 599500 339990 288050 329370 516920 460820 427790 499180 299900 471090 38909 600220 326510 317800 338720 511350 464410 421470 480360 1 1 1 1 1 1 1 1 1 1 1 205580000 177770000 27813000 15217 384 13950 79159;79160;79161 95663;95664;95665 95665 3 QFFDRVPSEYTYR Unmodified 1706.8053 0.80526994 89 O00451;O00451-3;O00451-2 GFRA2 GDNF family receptor alpha-2 yes no 0 0 0 1 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 51.331 51.588 3 2.74E-25 14227 20211116_3447_TMUAki_TMT10x_S_F8 219.61 194.18 28975000 49278000 598770 51121000 43144000 49315000 34015000 45527000 41276000 38300000 41804000 26983000 45989000 3156600 51994000 41175000 50265000 35205000 46263000 41692000 37703000 40310000 9 9 8 9 9 9 9 9 9 9 9 13006000 20910000 337050 22634000 22476000 31525000 17693000 19943000 17678000 16527000 17733000 12113000 19518000 1525100 23101000 21452000 31307000 18197000 20759000 17987000 16282000 17104000 3 3 3 3 3 3 3 3 3 3 3 15968000 28368000 261720 28487000 20668000 17790000 16322000 25584000 23598000 21773000 24071000 14870000 26471000 1631500 28893000 19724000 18958000 17009000 25504000 23705000 21421000 23206000 6 6 5 6 6 6 6 6 6 6 6 4470000000 2056400000 2413600000 15218 89 13951 79162;79163;79164;79165;79166;79167 95666;95667;95668;95669;95670;95671;95672;95673;95674;95675 95674 10 QFIQGPPEVIR Unmodified 1282.7034 0.70337105 2948 Q9NTX5;Q9NTX5-3;Q9NTX5-6;Q9NTX5-2 ECHDC1 Ethylmalonyl-CoA decarboxylase yes no 0 0 0 0 By MS/MS 6 0 1 1 53.431 53.551 2 1.6368E-14 15242 20211116_3445_TMUAki_TMT10x_S_F6 190.96 151.42 3020700 4431600 28144 5235700 2836100 2424500 2365600 4087600 3412500 3602700 4041700 2812800 4138100 274080 5242400 2709300 2680700 2456600 4057500 3448200 3538500 3879400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3020700 4431600 28144 5235700 2836100 2424500 2365600 4087600 3412500 3602700 4041700 2812800 4138100 274080 5242400 2709300 2680700 2456600 4057500 3448200 3538500 3879400 1 1 1 1 1 1 1 1 1 1 1 192220000 0 192220000 15219 2948 13952 79168 95676 95676 1 QFLECAQNQGDIK Unmodified 1549.7195 0.7194914 3351 Q9Y6H1;Q5T1J5 CHCHD2;CHCHD2P9 Coiled-coil-helix-coiled-coil-helix domain-containing protein 2;Putative coiled-coil-helix-coiled-coil-helix domain-containing protein CHCHD2P9, mitochondrial yes no 0 0 0 0 By MS/MS 5 0 2 2 50.615 50.809 3 0.07797 14953 20211116_3433_TMUAki_TMT10x_P_F5 38.399 24.737 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15220 3351 13953 79169;79170 95677;95678 95677 2 QFLESSELPR Unmodified 1204.6088 0.60880197 286 O60749;O60749-2 SNX2 Sorting nexin-2 yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 50.195 50.327 2 5.5334E-10 14528 20211116_3431_TMUAki_TMT10x_P_F4 171.85 87.286 2355000 4220800 26384 4966200 2267500 1988100 1747900 3461700 3512000 3189300 3561800 2192900 3941200 218610 4969200 2162800 2242200 1854700 3437100 3497400 3126100 3434400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2355000 4220800 26384 4966200 2267500 1988100 1747900 3461700 3512000 3189300 3561800 2192900 3941200 218610 4969200 2162800 2242200 1854700 3437100 3497400 3126100 3434400 1 1 1 1 1 1 1 1 1 1 1 142960000 0 142960000 15221 286 13954 79171;79172;79173 95679;95680;95681 95680 3 QFLEVELDQAR Unmodified 1346.683 0.68302954 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.17 0.898 2 1 3 4 2 61.708 61.61 2 5.7844E-14 20308 20211116_3429_TMUAki_TMT10x_P_F2 147.37 117.2 6165100 9922400 9502.7 10159000 7484000 9286000 7432700 7639200 7201300 7514300 8146100 5740400 9259600 535900 10334000 7175100 9476800 7534800 7846400 7369700 7344000 7829000 2 2 1 2 2 2 2 2 2 2 2 3191200 4750200 0 4803400 3990600 6180100 4228600 4034400 3496300 3714100 4246200 2971300 4432600 273210 4917100 3832200 6162800 4254200 4200600 3615500 3640600 4073000 1 1 0 1 1 1 1 1 1 1 1 2973900 5172300 9502.7 5355300 3493300 3105900 3204100 3604800 3705000 3800200 3899900 2769100 4826900 262690 5416700 3342900 3314000 3280700 3645800 3754200 3703400 3756100 1 1 1 1 1 1 1 1 1 1 1 979280000 626010000 353260000 15222 1741 13955 79174;79175;79176;79177;79178;79179 95682;95683;95684;95685;95686 95682 5 QFLFRPWDVTK Unmodified 1435.7612 0.76122028 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 67.626 67.691 3 4.5076E-06 20780 20211116_3444_TMUAki_TMT10x_S_F5 118.37 87.477 26380000 47057000 227870 44425000 43518000 39572000 33544000 23739000 17663000 22859000 35200000 24563000 43899000 2604000 45434000 41488000 40257000 34055000 24909000 19286000 22362000 33413000 4 4 3 4 4 4 4 4 4 4 4 12780000 22100000 104790 22011000 21580000 29421000 22081000 11957000 8578600 11435000 16310000 11900000 20621000 1280500 22572000 20711000 29123000 21953000 13023000 9592500 11190000 15494000 2 2 2 2 2 2 2 2 2 2 2 13600000 24957000 123080 22414000 21938000 10151000 11463000 11782000 9084100 11424000 18890000 12663000 23278000 1323600 22862000 20777000 11135000 12102000 11887000 9693600 11172000 17919000 2 2 1 2 2 2 2 2 2 2 2 1229100000 765010000 464100000 15223 769 13956 79180;79181 95687;95688;95689;95690 95689 4 QFLPFLQR Unmodified 1047.5866 0.58655038 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 68.73 68.806 2 0.10217 22088 20211116_3431_TMUAki_TMT10x_P_F4 57.281 35.133 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15224 2048 13957 79182 95691 95691 1 QFLQAAEAIDDIPFGITSNSDVFSK Unmodified 2712.3283 0.3282766 533 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 1.12 1 3 2 3 3 81.248 81.263 3;4 1.153E-38 27459 20211116_3433_TMUAki_TMT10x_P_F5 195.15 180.06 13188000 20337000 223300 19927000 14738000 16640000 15837000 9207900 7980500 9961800 14707000 12281000 18975000 962460 20308000 14167000 16988000 15763000 9759600 8701300 9698100 13979000 7 7 2 7 7 7 7 7 7 7 7 7153300 9943700 0 9445500 6063300 9723700 6619600 4854700 3839200 5293000 7720000 6659900 9276700 236380 9675400 5823200 9779300 6599400 5194700 4165100 5151400 7327100 4 4 0 4 4 4 4 4 4 4 4 6035100 10393000 223300 10481000 8675100 6916400 9217100 4353200 4141300 4668700 6987200 5620800 9698500 726080 10633000 8344000 7208200 9163800 4564900 4536200 4546700 6652200 3 3 2 3 3 3 3 3 3 3 3 6047900000 2501800000 3546200000 15225 533 13958 79183;79184;79185;79186;79187;79188 95692;95693;95694;95695;95696;95697;95698 95693 7 QFLSETEK Unmodified 980.48148 0.48147619 588 P09936 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 1 3 43.976 43.827 2 0.0091458 12225 20211116_3442_TMUAki_TMT10x_S_F4 82.287 48.034 5798900 9532200 77738 11126000 10226000 8011400 7147700 7708800 8484800 6306700 8697900 5399900 8900600 615210 11191000 9732100 8346800 7452500 7811100 8580900 6217200 8383900 3 3 3 3 3 3 3 3 3 3 3 1817700 2824200 40225 3132800 5992400 4417400 2793900 2536300 2752000 2092400 2626300 1692800 2636400 246660 3193300 5667800 4378600 2999900 2660400 2797100 2061800 2537400 1 1 1 1 1 1 1 1 1 1 1 3981100 6708100 37513 7993400 4233200 3594000 4353800 5172500 5732800 4214300 6071600 3707100 6264200 368550 7998000 4064300 3968200 4452600 5150700 5783800 4155400 5846500 2 2 2 2 2 2 2 2 2 2 2 118610000 57168000 61447000 15226 588 13959 79189;79190;79191;79192 95699;95700;95701;95702;95703 95702 5 QFNYTHICAGASAFGK Unmodified 1770.8148 0.81478877 659 P13804;P13804-2 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 53.262 53.045 3 2.8297E-08 15582 20211116_3440_TMUAki_TMT10x_S_F2 119.46 109.26 9830600 17256000 91922 19678000 11604000 11743000 9243300 11291000 10287000 10208000 12841000 9153600 16111000 878880 19785000 11070000 12443000 9531600 11470000 10510000 10015000 12308000 4 4 2 4 4 4 4 4 4 4 4 2854700 5055900 51942 5499200 4729300 5944800 3538700 3142100 2815300 2723800 3490700 2658400 4719300 311340 5585500 4507900 5965700 3629300 3323600 2919700 2677400 3346400 1 1 1 1 1 1 1 1 1 1 1 6976000 12200000 39980 14179000 6874900 5798500 5704600 8148800 7471600 7484500 9349900 6495200 11391000 567550 14200000 6561900 6476800 5902300 8146700 7590400 7337100 8961400 3 3 1 3 3 3 3 3 3 3 3 532480000 277470000 255010000 15227 659 13960 79193;79194 95704;95705;95706;95707 95706 4 QFPCEPFK Unmodified 1051.4797 0.47970205 678 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 53.199 53.318 2 0.0043442 15206 20211116_3445_TMUAki_TMT10x_S_F6 98.392 62.512 2543600 4407900 13198 5132300 2303900 2092000 1732800 4019900 3917200 3442300 3836500 2368500 4115800 219830 5139200 2195500 2362100 1855200 3972600 3886600 3385700 3703400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2543600 4407900 13198 5132300 2303900 2092000 1732800 4019900 3917200 3442300 3836500 2368500 4115800 219830 5139200 2195500 2362100 1855200 3972600 3886600 3385700 3703400 1 1 1 1 1 1 1 1 1 1 1 186070000 0 186070000 15228 678 13961 79195;79196 95708;95709 95709 2 QFPNASLIGLTATATNHVLTDAQK Unmodified 2510.3129 0.3129013 1041 P46063 RECQL ATP-dependent DNA helicase Q1 yes yes 0 0 0 0 By MS/MS 2 0 1 1 77.056 77.015 3 2.3876E-26 25257 20211116_3440_TMUAki_TMT10x_S_F2 151.94 142.28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15229 1041 13962 79197 95710 95710 1 QFREDDFR Unmodified 1111.5047 0.50467125 915 P34897;P34897-3;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 1 By MS/MS 3 0 1 1 33.41 33.171 3 0.010305 10311 20211116_3441_TMUAki_TMT10x_S_F3 72.879 44.997 355050 552270 0 588110 374170 310330 416290 421790 419690 376560 527590 330570 515460 28391 593290 359750 335790 420170 421870 430640 369630 505610 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 355050 552270 0 588110 374170 310330 416290 421790 419690 376560 527590 330570 515460 28391 593290 359750 335790 420170 421870 430640 369630 505610 1 1 0 1 1 1 1 1 1 1 1 28178000 0 28178000 15230 915 13963 79198 95711 95711 1 QFREDDFRR Unmodified 1267.6058 0.60578227 915 P34897;P34897-3;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 2 By MS/MS 4.5 0.5 1 1 2 30.161 30.147 4 0.081387 6423 20211116_3431_TMUAki_TMT10x_P_F4 45.161 21.31 262600 442540 0 392450 801900 604530 337010 278520 390500 272690 395430 244500 412750 28613 407080 757160 595440 367810 299450 395100 266570 381300 1 1 0 1 1 1 1 1 1 1 1 262600 442540 0 392450 801900 604530 337010 278520 390500 272690 395430 244500 412750 28613 407080 757160 595440 367810 299450 395100 266570 381300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78802000 78802000 0 15231 915 13964 79199;79200 95712 95712 1 QFSQYIK Unmodified 912.47052 0.47051757 1051 P46777 RPL5 60S ribosomal protein L5 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 4 2 2 48.626 48.623 2 0.0065927 13045 20211116_3447_TMUAki_TMT10x_S_F8 106.04 48.483 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15232 1051 13965 79201;79202;79203;79204 95713;95714;95715;95716 95715 4 QFVPIKVEQIEAGTPGR Unmodified 1868.0156 0.01559707 1871 Q16881;Q16881-3;Q16881-4;Q16881-5;Q16881-2;Q16881-6;Q16881-7 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 0 0 0 1 By MS/MS By MS/MS 7 0.894 2 1 2 3 2 58.408 58.608 3 2.1272E-21 17057 20211116_3447_TMUAki_TMT10x_S_F8 163.45 142.79 57021000 99224000 489250 88169000 80933000 105310000 72098000 96312000 95690000 90384000 88601000 53095000 92545000 5076700 90984000 77404000 106020000 74324000 98200000 96064000 88518000 85689000 8 8 5 8 8 8 8 8 8 8 8 27230000 48203000 322380 39559000 41437000 71471000 38662000 46447000 48031000 43674000 43785000 25356000 44946000 2398900 41444000 39682000 70279000 39652000 48404000 48302000 42768000 42370000 3 3 2 3 3 3 3 3 3 3 3 29791000 51021000 166870 48610000 39495000 33838000 33436000 49865000 47659000 46710000 44815000 27739000 47599000 2677800 49539000 37722000 35743000 34672000 49796000 47762000 45749000 43320000 5 5 3 5 5 5 5 5 5 5 5 11194000000 7996300000 3197900000 15233 1871 13966 79205;79206;79207;79208;79209 95717;95718;95719;95720;95721;95722;95723;95724 95723 8 QFVTPADVVSGNPK Unmodified 1457.7514 0.75144346 658 P13797;P13797-3;P13797-2;Q14651 PLS3;PLS1 Plastin-3;Plastin-1 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 55.887 56.616 3 3.1393E-06 17989 20211116_3435_TMUAki_TMT10x_P_F7 102.73 80.194 2819100 4462600 77013 4801000 4595100 5740300 4142100 3779900 3645000 2978000 3693700 2625500 4165400 330370 4887900 4399200 5745900 4209800 3918100 3731600 2941600 3561600 1 1 1 1 1 1 1 1 1 1 1 2819100 4462600 77013 4801000 4595100 5740300 4142100 3779900 3645000 2978000 3693700 2625500 4165400 330370 4887900 4399200 5745900 4209800 3918100 3731600 2941600 3561600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 370650000 370650000 0 15234 658 13967 79210;79211 95725;95726 95725 2 QFVVFEGNHYFYSPYPTK Unmodified 2222.0473 0.047291129 494 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.14 0.639 1 4 2 6 1 68.474 68.367 3 1.0015E-08 21884 20211116_3440_TMUAki_TMT10x_S_F2 117.3 103.04 23140000 42377000 234540 38716000 28915000 43329000 31599000 25035000 24627000 27817000 28355000 21547000 39528000 2139600 39824000 27802000 43445000 31696000 26460000 25491000 27053000 27238000 10 10 6 10 10 10 10 10 10 10 10 15622000 28412000 173460 26401000 17504000 33268000 20635000 16989000 16472000 19061000 18380000 14546000 26504000 1404800 27178000 16868000 33102000 20639000 18157000 17007000 18531000 17672000 8 8 4 8 8 8 8 8 8 8 8 7518600 13964000 61086 12315000 11411000 10061000 10964000 8045800 8155600 8755900 9974900 7001000 13024000 734800 12646000 10934000 10343000 11058000 8303400 8484400 8522200 9566100 2 2 2 2 2 2 2 2 2 2 2 3535500000 2329500000 1206000000 15235 494 13968 79212;79213;79214;79215;79216;79217;79218 95727;95728;95729;95730;95731;95732;95733;95734;95735;95736;95737;95738 95737 12 QFYINVER Unmodified 1067.54 0.53999412 1277;1697 P60842;P60842-2;Q14240;Q14240-2 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 49.04 49.22 2 0.0081879 13508 20211116_3445_TMUAki_TMT10x_S_F6 83.623 42.121 3310300 5226300 93321 6528100 2258700 2575000 2867300 2946300 3366900 3276100 3956100 3082900 4881600 346690 6508700 2186700 2875400 2892100 2986700 3424200 3186000 3798100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3310300 5226300 93321 6528100 2258700 2575000 2867300 2946300 3366900 3276100 3956100 3082900 4881600 346690 6508700 2186700 2875400 2892100 2986700 3424200 3186000 3798100 1 1 1 1 1 1 1 1 1 1 1 125660000 0 125660000 15236 1277;1697 13969 79219;79220;79221 95739;95740;95741 95741 3 QGAFLVNAAR Unmodified 1045.5669 0.56687757 1259 P56545;P56545-2;P56545-3 CTBP2 C-terminal-binding protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 41.965 41.874 2 0.0013773 10765 20211116_3428_TMUAki_TMT10x_P_F1 90.64 61.264 1734900 2905100 15857 3172000 3036300 2885900 1778500 2766200 2666200 2145900 2914000 1615500 2711800 173740 3212900 2880500 2954900 1897300 2800000 2682300 2121300 2803400 2 2 1 2 2 2 2 2 2 2 2 982180 1478900 0 1657400 2335300 2190200 1187300 1426300 1399300 1094300 1702000 914490 1380600 97277 1686100 2210100 2181200 1270900 1478800 1425000 1082400 1632500 1 1 0 1 1 1 1 1 1 1 1 752760 1426200 15857 1514700 700980 695660 591240 1339900 1266800 1051600 1212000 701010 1331100 76462 1526700 670340 773690 626380 1321200 1257300 1038900 1170900 1 1 1 1 1 1 1 1 1 1 1 50156000 27398000 22758000 15237 1259 13970 79222;79223;79224 95742;95743;95744 95742 3 QGAFLVNTAR Unmodified 1075.5774 0.57744226 1624 Q13363;Q13363-2 CTBP1 C-terminal-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 6 2.92 1 1 2 1 3 40.408 40.51 2 4.8074E-07 11753 20211116_3446_TMUAki_TMT10x_S_F7 110.47 76.301 2180300 3650200 11439 4022600 3445000 3035000 2358500 3378200 3328600 2825400 3307000 2030100 3407400 201200 4062600 3276100 3160500 2479100 3400900 3343000 2782200 3190800 3 3 2 3 3 3 3 3 3 3 3 723100 1130600 0 1281000 1913700 1723400 951630 1032300 1092400 926820 1096700 673220 1055500 68684 1302800 1810300 1712900 1019900 1081300 1105300 909530 1057900 1 1 0 1 1 1 1 1 1 1 1 1457200 2519600 11439 2741600 1531200 1311500 1406800 2345900 2236200 1898600 2210200 1356900 2351900 132510 2759800 1465800 1447600 1459200 2319600 2237700 1872700 2132900 2 2 2 2 2 2 2 2 2 2 2 182070000 86921000 95151000 15238 1624 13971 79225;79226;79227;79228 95745;95746;95747;95748 95747 4 QGANINEIR Unmodified 1013.5254 0.52540669 1791 Q15365 PCBP1 Poly(rC)-binding protein 1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 32.181 31.936 2 5.2694E-05 9775 20211116_3441_TMUAki_TMT10x_S_F3 148.52 105.66 444440 805300 0 768230 531740 422800 572670 440890 522880 403780 636050 413780 751300 33381 781170 510580 452430 577200 446240 538140 395880 610070 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 444440 805300 0 768230 531740 422800 572670 440890 522880 403780 636050 413780 751300 33381 781170 510580 452430 577200 446240 538140 395880 610070 1 1 0 1 1 1 1 1 1 1 1 33218000 0 33218000 15239 1791 13972 79229 95749 95749 1 QGAPTSFLPPEASQLKPDR Unmodified 2038.0484 0.048353761 2675 Q9BUJ2;Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2-3 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 56.284 56.914 3 2.2932E-15 16399 20211116_3447_TMUAki_TMT10x_S_F8 126.8 102.01 5976200 10708000 51047 10995000 7702100 8202000 6121900 8929600 8598600 8143300 8557200 5564800 9992500 567220 11154000 7348500 8544300 6369000 9018700 8637700 7985600 8256100 3 3 3 3 3 3 3 3 3 3 3 1797800 3143400 31155 3060800 2945800 4373700 2501900 2438000 2284200 2212700 2353700 1674200 2932800 194160 3148000 2815300 4331200 2554300 2569700 2335700 2170300 2268300 1 1 1 1 1 1 1 1 1 1 1 4178400 7564300 19892 7933900 4756300 3828300 3620000 6491600 6314400 5930600 6203500 3890700 7059700 373050 8006400 4533200 4213100 3814700 6449000 6302000 5815200 5987700 2 2 2 2 2 2 2 2 2 2 2 1945700000 817480000 1128200000 15240 2675 13973 79230;79231;79232 95750;95751;95752;95753 95753 4 QGDTGDWIGTFLGHK Unmodified 1630.774 0.77396981 3284 Q9Y3F4;Q9Y3F4-2 STRAP Serine-threonine kinase receptor-associated protein yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 71.491 71.81 3 8.7949E-07 24290 20211116_3435_TMUAki_TMT10x_P_F7 110.57 94.453 28586000 41668000 66490 41424000 30879000 35400000 32757000 17784000 15020000 19070000 29591000 26615000 38879000 2197000 42187000 29642000 36039000 32579000 19009000 16573000 18572000 28094000 3 3 1 3 3 3 3 3 3 3 3 16914000 25194000 66490 26675000 18902000 27441000 21208000 10768000 9891200 12400000 18423000 15749000 23514000 1409100 27120000 18181000 27533000 21041000 11838000 10861000 12044000 17508000 2 2 1 2 2 2 2 2 2 2 2 11672000 16474000 0 14749000 11977000 7959700 11549000 7016700 5128300 6669600 11168000 10867000 15365000 787910 15067000 11461000 8506400 11538000 7171300 5712400 6528200 10586000 1 1 0 1 1 1 1 1 1 1 1 2669800000 894840000 1775000000 15241 3284 13974 79233;79234 95754;95755;95756 95754 3 QGEEEDAEIIVK Unmodified 1358.6565 0.65654002 3124 Q9UHX1-6;Q9UHX1-5;Q9UHX1-4;Q9UHX1-2;Q9UHX1;Q9UHX1-3 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 47.922 47.801 2;3 1.0435E-15 15192 20211116_3439_TMUAki_TMT10x_S_F1 176.18 109.49 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15242 3124 13975 79235;79236 95757;95758 95758 2 QGEVIVSIEEKPK Unmodified 1454.7981 0.7980593 1091 P49321;P49321-3;P49321-4 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 1 By MS/MS By MS/MS 4.64 0.881 1 4 4 2 6 5 48.566 48.708 3;4 1.6938E-14 13789 20211116_3431_TMUAki_TMT10x_P_F4 161.84 126.33 49414000 70599000 577720 85558000 64731000 60580000 46170000 33277000 36156000 36453000 51416000 46013000 65932000 4721600 85853000 61628000 62642000 47492000 35307000 37762000 35471000 49127000 9 9 7 9 9 9 9 9 9 9 9 34711000 48955000 423320 60125000 50563000 49846000 31132000 24193000 26139000 26009000 36742000 32322000 45722000 3377700 60395000 48012000 50837000 32440000 25947000 27186000 25327000 35116000 6 6 5 6 6 6 6 6 6 6 6 14703000 21644000 154400 25432000 14168000 10734000 15037000 9084500 10017000 10444000 14674000 13691000 20210000 1343900 25458000 13616000 11805000 15052000 9360500 10576000 10144000 14011000 3 3 2 3 3 3 3 3 3 3 3 5018500000 2826400000 2192000000 15243 1091 13976 79237;79238;79239;79240;79241;79242;79243;79244;79245;79246;79247 95759;95760;95761;95762;95763;95764;95765;95766;95767;95768;95769 95760 11 QGEVIVSIEEKPKEVSEEQPVVTLEK Unmodified 2922.5437 0.54374868 1091 P49321;P49321-3;P49321-4 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 2 By MS/MS By MS/MS 2.38 0.992 2 2 3 1 4 4 65.472 65.194 4;5 2.9135E-17 22384 20211116_3430_TMUAki_TMT10x_P_F3 130.9 118.93 12215000 22738000 48692 16246000 19154000 29540000 18498000 25937000 23000000 22153000 20981000 11373000 21192000 1121600 17231000 18350000 29192000 18937000 26439000 23129000 21791000 20302000 6 6 3 6 6 6 6 6 6 6 6 5852100 10819000 25793 7537400 8997800 20293000 10495000 13954000 12257000 12068000 10846000 5449000 10083000 536150 8111900 8665600 19744000 10621000 14451000 12342000 11864000 10506000 3 3 2 3 3 3 3 3 3 3 3 6362400 11918000 22899 8708600 10156000 9246700 8003100 11983000 10743000 10084000 10135000 5924000 11109000 585460 9119000 9684300 9448300 8315300 11989000 10788000 9927200 9795900 3 3 1 3 3 3 3 3 3 3 3 5398800000 3484100000 1914700000 15244 1091 13977 79248;79249;79250;79251;79252;79253;79254;79255 95770;95771;95772;95773;95774;95775 95772 6 QGFDFLCMPVFHPR Oxidation (M) 1765.8069 0.80686662 128 O14744;O14744-5;O14744-2;O14744-3;O14744-4 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed yes no 0 0 1 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 65.048 64.891 3 4.2324E-05 22161 20211116_3439_TMUAki_TMT10x_S_F1 96.464 89.425 4832800 8271300 129150 8622300 6051700 7096900 5882900 6289600 5905600 6460300 7192700 4500700 7719300 533190 8748600 5805900 7305800 5976800 6440700 6052600 6302400 6898700 3 3 2 3 3 3 3 3 3 3 3 1689500 2611400 0 2960500 2103200 3701500 2044900 2182900 2028400 2283200 2441700 1573100 2438000 140950 3006600 2014800 3691000 2076800 2299000 2078900 2225700 2342600 1 1 0 1 1 1 1 1 1 1 1 3143300 5659900 129150 5661900 3948500 3395300 3838000 4106700 3877200 4177100 4751000 2927700 5281300 392240 5742000 3791000 3614700 3900000 4141700 3973600 4076700 4556100 2 2 2 2 2 2 2 2 2 2 2 1413100000 742070000 671020000 15245 128 13978 79256;79257;79258 95776;95777;95778 95777 97 3 QGFDFLCMPVFHPR Unmodified 1749.812 0.811952 128 O14744;O14744-5;O14744-2;O14744-3;O14744-4 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 76.676 76.54 3 1.0786E-06 27860 20211116_3441_TMUAki_TMT10x_S_F3 115.12 94.456 1691700 3238800 27385 2953300 2666600 1895900 2187400 1733600 1576300 1733500 2221000 1575300 3021100 179430 3017200 2546500 1993000 2224900 1770800 1653200 1693000 2122500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1691700 3238800 27385 2953300 2666600 1895900 2187400 1733600 1576300 1733500 2221000 1575300 3021100 179430 3017200 2546500 1993000 2224900 1770800 1653200 1693000 2122500 1 1 1 1 1 1 1 1 1 1 1 643750000 0 643750000 15246 128 13978 79259;79260 95779;95780 95780 2 QGFGELLQAVPLADSFR Unmodified 1846.9577 0.95774784 829 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5.89 2.71 4 3 4 7 11 7 77.34 77.346 2;3 3.2684E-93 28222 20211116_3446_TMUAki_TMT10x_S_F7 338.79 306.38 81913000 128080000 254910 121070000 90601000 127590000 102950000 80473000 76138000 88589000 99373000 76261000 119480000 5624000 124100000 87117000 128510000 102950000 84440000 79455000 86186000 95143000 19 19 5 19 19 19 19 19 19 19 19 50157000 75912000 134120 72817000 48516000 87817000 58166000 49330000 44998000 52726000 60509000 46697000 70822000 3676800 74728000 46732000 87672000 58088000 52199000 46904000 51355000 57890000 11 11 3 11 11 11 11 11 11 11 11 31756000 52167000 120780 48250000 42085000 39768000 44787000 31143000 31140000 35863000 38865000 29564000 48662000 1947300 49372000 40385000 40843000 44866000 32241000 32550000 34831000 37252000 8 8 2 8 8 8 8 8 8 8 8 31479000000 19238000000 12240000000 15247 829 13979 79261;79262;79263;79264;79265;79266;79267;79268;79269;79270;79271;79272;79273;79274;79275;79276;79277;79278 95781;95782;95783;95784;95785;95786;95787;95788;95789;95790;95791;95792;95793;95794;95795;95796;95797;95798;95799;95800 95796 20 QGFNVVVESGAGEASK Unmodified 1577.7686 0.76855009 1630 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 By MS/MS 4.33 0.471 2 1 3 51.504 51.611 3 0.00015824 15504 20211116_3442_TMUAki_TMT10x_S_F4 79.013 57.456 6538600 11856000 73060 11015000 6927800 6166700 5985400 9426900 8768500 8949100 9408100 6088600 11060000 615630 11224000 6623400 6654500 6206700 9405800 8821400 8759800 9055800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6538600 11856000 73060 11015000 6927800 6166700 5985400 9426900 8768500 8949100 9408100 6088600 11060000 615630 11224000 6623400 6654500 6206700 9405800 8821400 8759800 9055800 2 2 2 2 2 2 2 2 2 2 2 237010000 0 237010000 15248 1630 13980 79279;79280;79281 95801;95802;95803;95804 95802 4 QGGDVLQNEEGETTSHLMGMFYR 2 Oxidation (M) 2630.1377 0.13771541 978 P39748 FEN1 Flap endonuclease 1 yes yes 0 0 2 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 51.535 51.407 3 3.6309E-11 16491 20211116_3430_TMUAki_TMT10x_P_F3 110.4 106.81 3015900 5304700 39049 5520400 4029100 5234900 3237000 5818700 6000600 5391000 4654200 2808400 4950600 297390 5612200 3845500 5363700 3410400 5873700 5935800 5282700 4531500 6 6 4 6 6 6 6 6 6 6 6 1037500 1719500 1295 1897700 1814900 3000700 1539300 1844500 1863700 1823700 1605000 966030 1605200 96621 1939900 1733300 2962900 1585900 1933000 1872600 1782000 1556300 2 2 1 2 2 2 2 2 2 2 2 1978400 3585100 37754 3622700 2214200 2234200 1697600 3974200 4136800 3567200 3049300 1842400 3345400 200770 3672400 2112200 2400800 1824500 3940700 4063200 3500700 2975200 4 4 3 4 4 4 4 4 4 4 4 1452000000 496650000 955370000 15249 978 13981 79282;79283;79284 95805;95806;95807;95808;95809;95810 95805 1255;1256 6 QGGDVLQNEEGETTSHLMGMFYR Oxidation (M) 2614.1428 0.14280079 978 P39748 FEN1 Flap endonuclease 1 yes yes 0 0 1 0 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 61.861 61.655 3 2.6659E-15 20862 20211116_3430_TMUAki_TMT10x_P_F3 122.34 110.55 6355600 11133000 110650 11696000 7925200 7330900 7101000 5287300 4882500 5942400 7727300 5918400 10390000 640950 11826000 7584400 7691500 7177300 5498500 5165200 5776700 7366100 4 4 3 4 4 4 4 4 4 4 4 1051700 1897800 2283.4 1771700 968310 1837600 1344800 882130 597970 1008900 1155200 979260 1770400 88154 1817300 938060 1846400 1321200 948910 660780 980110 1097100 1 1 1 1 1 1 1 1 1 1 1 5303900 9235000 108360 9924000 6956900 5493300 5756200 4405200 4284600 4933600 6572100 4939100 8619900 552800 10009000 6646300 5845100 5856000 4549600 4504400 4796600 6269000 3 3 2 3 3 3 3 3 3 3 3 1136300000 669150000 467150000 15250 978 13981 79285;79286;79287 95811;95812;95813;95814;95815 95811 1255;1256 5 QGGLGPMNIPLVSDPK Oxidation (M) 1637.8447 0.84469192 1533 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 1 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 59.11 59.486 2;3 0.0040612 17886 20211116_3445_TMUAki_TMT10x_S_F6 58.671 45.008 18114000 31475000 597100 33570000 27927000 35078000 22802000 29137000 27637000 28523000 27265000 16870000 29377000 2195700 34121000 26685000 35509000 23546000 29906000 27891000 27882000 26313000 3 3 3 3 3 3 3 3 3 3 3 9262900 15399000 167660 15500000 17419000 25260000 13843000 15467000 14522000 14883000 14211000 8626000 14369000 1038500 15952000 16623000 24911000 14250000 16202000 14733000 14559000 13718000 1 1 1 1 1 1 1 1 1 1 1 8851100 16076000 429440 18069000 10508000 9818500 8958200 13671000 13115000 13640000 13054000 8244500 15008000 1157200 18169000 10062000 10598000 9296400 13704000 13158000 13323000 12595000 2 2 2 2 2 2 2 2 2 2 2 946040000 442120000 503910000 15251 1533 13982 79288;79289;79290 95816;95817;95818;95819 95819 2067 4 QGGLGPMNIPLVSDPK Unmodified 1621.8498 0.84977729 1533 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 7.25 0.433 3 1 2 2 69.104 69.473 2;3 6.4533E-07 23858 20211116_3446_TMUAki_TMT10x_S_F7 103.43 83.643 59553000 93716000 97306 91902000 66230000 71091000 74213000 31811000 25155000 34346000 58712000 55449000 87440000 4942000 93572000 63699000 72824000 73342000 34402000 28929000 33440000 55599000 6 6 4 6 6 6 6 6 6 6 6 36495000 57261000 18227 48362000 40675000 56038000 51974000 20780000 15665000 21482000 35279000 33979000 53397000 2940100 50080000 39276000 55822000 51004000 22928000 18222000 20952000 33425000 2 2 1 2 2 2 2 2 2 2 2 23058000 36455000 79079 43540000 25555000 15053000 22240000 11031000 9490100 12864000 23433000 21470000 34043000 2001900 43491000 24424000 17002000 22337000 11474000 10707000 12488000 22173000 4 4 3 4 4 4 4 4 4 4 4 3324600000 1533900000 1790700000 15252 1533 13982 79291;79292;79293;79294 95820;95821;95822;95823;95824;95825;95826 95824 7 QGGLGPMNIPLVSDPKR Oxidation (M) 1793.9458 0.94580295 1533 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 1 1 By MS/MS By MS/MS 4.33 3.35 3 1 2 3 3 50.869 50.885 3;4 1.5109E-05 14236 20211116_3428_TMUAki_TMT10x_P_F1 89.358 76.525 21106000 37285000 464670 35163000 35221000 50539000 25668000 50347000 51316000 39981000 38151000 19656000 34783000 2375700 36252000 33560000 50533000 27330000 50889000 50615000 39475000 37210000 10 10 9 10 10 10 10 10 10 10 10 11386000 19591000 198170 18584000 24136000 38826000 18208000 25576000 26823000 21187000 20182000 10603000 18277000 1302300 19332000 23005000 38007000 19046000 26541000 26675000 20873000 19674000 5 5 4 5 5 5 5 5 5 5 5 9720100 17694000 266510 16580000 11086000 11713000 7460100 24771000 24493000 18794000 17969000 9052400 16506000 1073400 16920000 10554000 12526000 8283900 24348000 23940000 18602000 17536000 5 5 5 5 5 5 5 5 5 5 5 5508500000 3579800000 1928700000 15253 1533 13983 79295;79296;79297;79298;79299;79300 95827;95828;95829;95830;95831;95832;95833;95834;95835;95836 95827 2067 10 QGGLGPMNIPLVSDPKR Unmodified 1777.9509 0.95088832 1533 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 1 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 59.374 59.271 3 2.4851E-21 19855 20211116_3439_TMUAki_TMT10x_S_F1 161.91 138.77 36169000 63554000 614140 62051000 54270000 56152000 49261000 30495000 25662000 31330000 44502000 33681000 59297000 3771800 63320000 51945000 56991000 49499000 32325000 27808000 30564000 42346000 6 6 4 6 6 6 6 6 6 6 6 23046000 41510000 485570 41411000 38328000 44128000 36552000 18770000 15995000 19917000 28922000 21462000 38733000 2559800 42293000 36734000 44217000 36533000 20398000 17630000 19405000 27500000 3 3 2 3 3 3 3 3 3 3 3 13123000 22044000 128580 20640000 15943000 12024000 12709000 11725000 9667500 11413000 15580000 12219000 20564000 1212000 21026000 15211000 12774000 12966000 11927000 10178000 11159000 14846000 3 3 2 3 3 3 3 3 3 3 3 7780400000 5201000000 2579500000 15254 1533 13983 79301;79302;79303;79304;79305;79306 95837;95838;95839;95840;95841;95842 95840 6 QGGPTYYIDTNALR Unmodified 1567.7631 0.76307078 459 O96019;O96019-2 ACTL6A Actin-like protein 6A yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 4 4 4 4 53.242 53.392 2;3 2.3386E-37 15196 20211116_3445_TMUAki_TMT10x_S_F6 250.48 224.75 13651000 23441000 37783 25738000 19129000 21919000 15180000 20632000 20514000 18454000 20022000 12710000 21881000 1133800 26038000 18238000 22536000 15770000 20977000 20619000 18113000 19330000 7 7 3 7 7 7 7 7 7 7 7 5858300 9449500 5245.9 10286000 10958000 14497000 8275600 8657800 8754000 7556900 8051300 5454300 8820500 506810 10497000 10436000 14378000 8549400 9064400 8859800 7425800 7788500 3 3 1 3 3 3 3 3 3 3 3 7792600 13991000 32537 15452000 8171100 7421900 6904600 11974000 11760000 10897000 11971000 7255400 13061000 627000 15540000 7801400 8158600 7220200 11912000 11759000 10687000 11541000 4 4 2 4 4 4 4 4 4 4 4 2792500000 1552000000 1240500000 15255 459 13984 79307;79308;79309;79310;79311;79312;79313;79314 95843;95844;95845;95846;95847;95848;95849 95848 7 QGGYSQSNYNSPGSGQNYSGPPSSYQSSQGGYGR Unmodified 3502.4682 0.46824534 1576 Q12906-7;Q12906 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 0 By MS/MS 7 0 1 1 40.097 40.538 3 4.6418E-89 11605 20211116_3435_TMUAki_TMT10x_P_F7 251.07 244.49 31944 48221 0 114710 145570 160660 74909 80616 103430 55027 58676 29743 45244 0 113010 137800 159040 80561 85239 102380 54796 57988 1 1 0 1 1 1 1 1 1 1 1 31944 48221 0 114710 145570 160660 74909 80616 103430 55027 58676 29743 45244 0 113010 137800 159040 80561 85239 102380 54796 57988 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 112370000 112370000 0 15256 1576 13985 79315 95850 95850 1 QGHIYMEMNFTNK 2 Oxidation (M) 1643.7072 0.70721216 1391 P63010;P63010-2;P63010-3 AP2B1 AP-2 complex subunit beta yes no 0 0 2 0 By MS/MS 6 0 1 1 34.529 34.699 3 0.012044 7742 20211116_3445_TMUAki_TMT10x_S_F6 59.898 43.674 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15257 1391 13986 79316 95851 95851 1869;1870 1 QGIETPEDQNDLRK Unmodified 1641.7958 0.79582747 1819;1820 Q15637;Q15637-6;Q15637-4;Q15637-2;Q15637-3;Q15637-7;Q15637-5 SF1 Splicing factor 1 no no 0 0 0 1 By matching By MS/MS 2.5 0.5 1 1 1 1 35.998 35.764 3 6.4091E-19 11314 20211116_3441_TMUAki_TMT10x_S_F3 166.46 141.04 489090 800820 6915.7 949040 390560 437230 519290 650560 833730 497410 808080 455420 747800 42311 950050 377930 481780 529740 646100 833510 492100 780320 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 489090 800820 6915.7 949040 390560 437230 519290 650560 833730 497410 808080 455420 747800 42311 950050 377930 481780 529740 646100 833510 492100 780320 2 2 1 2 2 2 2 2 2 2 2 26727000 13411000 13316000 15258 1819;1820 13987 79317;79318 95852;95853 95852 2 QGILGAQPQLIFQPHR Unmodified 1801.9951 0.9951364 2181 Q8N163;Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 0 By MS/MS 4 0 1 1 59.843 59.731 3 0.077618 18852 20211116_3442_TMUAki_TMT10x_S_F4 29.633 15.475 19599000 35883000 289160 36573000 29568000 22248000 17710000 35007000 24773000 26522000 30373000 18251000 33485000 2034000 37048000 28070000 23835000 18803000 34694000 25092000 26252000 29127000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19599000 35883000 289160 36573000 29568000 22248000 17710000 35007000 24773000 26522000 30373000 18251000 33485000 2034000 37048000 28070000 23835000 18803000 34694000 25092000 26252000 29127000 1 1 1 1 1 1 1 1 1 1 1 466540000 0 466540000 15259 2181 13988 79319 95854 95854 1 QGLLGAPPAMPLLNGPALSTALLQLALQTQGQK Oxidation (M) 3325.8432 0.84318236 2163 Q8IY67-2;Q8IY67 RAVER1 Ribonucleoprotein PTB-binding 1 yes no 0 0 1 0 By MS/MS 7 0 1 1 82.846 82.874 4 1.2326E-10 29460 20211116_3446_TMUAki_TMT10x_S_F7 87.155 77.358 372970 629810 0 699990 494790 461910 537190 398060 424010 513680 505110 347250 587940 30287 705590 475340 483820 539180 411410 439190 496920 484750 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 372970 629810 0 699990 494790 461910 537190 398060 424010 513680 505110 347250 587940 30287 705590 475340 483820 539180 411410 439190 496920 484750 1 1 0 1 1 1 1 1 1 1 1 97911000 0 97911000 15260 2163 13989 79320 95855 95855 2617 1 QGLNGVPILSEEELSLLDEFYK Unmodified 2492.2686 0.26863645 1709 Q14444;Q14444-2 CAPRIN1 Caprin-1 yes no 0 0 0 0 By MS/MS By matching 2.67 0.943 2 1 2 1 82.014 82.012 3 9.1609E-20 27508 20211116_3431_TMUAki_TMT10x_P_F4 150.69 133.41 2403400 3729300 11834 3232600 1887100 3389200 2025700 1827400 1759300 2068100 2569900 2237700 3478000 186000 3335200 1812500 3408000 2039200 1944000 1830200 2009900 2454000 2 2 1 2 2 2 2 2 2 2 2 2403400 3729300 11834 3232600 1887100 3389200 2025700 1827400 1759300 2068100 2569900 2237700 3478000 186000 3335200 1812500 3408000 2039200 1944000 1830200 2009900 2454000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 495800000 336150000 159650000 15261 1709 13990 79321;79322;79323 95856;95857 95857 2 QGLQSQIAQVLEGR Unmodified 1525.8213 0.82125436 1080 P48681 NES Nestin yes yes 0 0 0 0 By MS/MS 7 0 2 2 69.968 70.245 2;3 1.5425E-05 24199 20211116_3446_TMUAki_TMT10x_S_F7 100.4 86.994 7882200 13743000 147010 13127000 9257400 8464600 8758200 8273200 8040100 8065000 9759400 7340200 12821000 809760 13365000 8872800 8906400 8887700 8415000 8271900 7885300 9361300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7882200 13743000 147010 13127000 9257400 8464600 8758200 8273200 8040100 8065000 9759400 7340200 12821000 809760 13365000 8872800 8906400 8887700 8415000 8271900 7885300 9361300 2 2 2 2 2 2 2 2 2 2 2 581370000 0 581370000 15262 1080 13991 79324;79325 95858;95859 95859 2 QGLSSSIFTK Unmodified 1066.5659 0.56587452 1098 P49419-2;P49419;P49419-4 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 0 0 0 0 By MS/MS 8 0 1 1 53.913 54.016 2 0.018698 15775 20211116_3436_TMUAki_TMT10x_P_F8 61.958 34.433 4446100 7174800 81032 7627300 9318200 12669000 7369100 7757300 7505300 7326400 6742500 4140300 6696600 512370 7824600 8890700 12485000 7580900 8122100 7602400 7173100 6527900 1 1 1 1 1 1 1 1 1 1 1 4446100 7174800 81032 7627300 9318200 12669000 7369100 7757300 7505300 7326400 6742500 4140300 6696600 512370 7824600 8890700 12485000 7580900 8122100 7602400 7173100 6527900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 205410000 205410000 0 15263 1098 13992 79326 95860 95860 1 QGLYELSASNFELHVAQGDHFIK Unmodified 2602.2816 0.28160117 2227 Q8NBS9;Q8NBS9-2 TXNDC5 Thioredoxin domain-containing protein 5 yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 68.124 68.365 4 1.1144E-56 23375 20211116_3446_TMUAki_TMT10x_S_F7 221.14 211.85 6608100 10913000 68420 9707000 7598100 10479000 7550000 6559000 5937500 6956400 7724700 6152800 10179000 554420 9999500 7283700 10540000 7610900 6878400 6174400 6777600 7396400 2 2 1 2 2 2 2 2 2 2 2 3396100 5120100 0 4487200 3275900 6208200 3359100 3244700 3114500 3457200 3631400 3161600 4775200 208810 4648100 3138600 6151800 3395400 3454900 3197500 3367700 3487000 1 1 0 1 1 1 1 1 1 1 1 3212000 5793300 68420 5219800 4322200 4270900 4190900 3314200 2823000 3499300 4093300 2991200 5403600 345610 5351400 4145100 4387900 4215500 3423500 2976800 3409900 3909300 1 1 1 1 1 1 1 1 1 1 1 1668400000 721330000 947040000 15264 2227 13993 79327;79328;79329 95861;95862 95862 2 QGMDLSANQDEETDQETFQLEIDRDTK Oxidation (M) 3171.3786 0.3786102 1859 Q16658 FSCN1 Fascin yes yes 0 0 1 1 By MS/MS By MS/MS 1.4 0.8 4 1 2 3 57.655 57.454 3;4 6.2085E-64 19081 20211116_3439_TMUAki_TMT10x_S_F1 229.93 223.76 24830000 44102000 388280 38404000 27464000 45969000 28711000 31275000 32029000 32787000 32739000 23119000 41131000 2155300 39694000 26369000 46033000 29160000 32585000 32464000 31959000 31561000 10 10 3 10 10 10 10 10 10 10 10 14700000 25912000 333950 22413000 14880000 33008000 16537000 17504000 18303000 19131000 18766000 13689000 24166000 1398800 23270000 14321000 32624000 16742000 18628000 18559000 18618000 18089000 5 5 1 5 5 5 5 5 5 5 5 10129000 18190000 54325 15991000 12584000 12961000 12174000 13771000 13727000 13655000 13973000 9430400 16965000 756510 16424000 12048000 13409000 12418000 13957000 13905000 13341000 13472000 5 5 2 5 5 5 5 5 5 5 5 7290600000 4652300000 2638400000 15265 1859 13994 79330;79331;79332;79333;79334 95863;95864;95865;95866;95867;95868;95869;95870;95871;95872 95869 2476 10 QGMDLSANQDEETDQETFQLEIDRDTK Unmodified 3155.3837 0.38369558 1859 Q16658 FSCN1 Fascin yes yes 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 63.37 63.203 4 2.576E-18 19438 20211116_3428_TMUAki_TMT10x_P_F1 138.71 124.69 34657000 57859000 1025000 65219000 34944000 33979000 32037000 20379000 25080000 26627000 39597000 32277000 54016000 3832600 65547000 33495000 36237000 32433000 21593000 26334000 25748000 37749000 5 5 5 5 5 5 5 5 5 5 5 9990700 14562000 170830 16675000 10507000 15095000 10935000 6041100 6332800 6565100 10469000 9303600 13596000 994750 16839000 10096000 15272000 10927000 6614800 6790600 6390300 9971100 2 2 2 2 2 2 2 2 2 2 2 24666000 43297000 854170 48543000 24437000 18884000 21103000 14338000 18747000 20062000 29128000 22973000 40420000 2837800 48708000 23399000 20965000 21507000 14978000 19543000 19357000 27778000 3 3 3 3 3 3 3 3 3 3 3 3116600000 1373600000 1743000000 15266 1859 13994 79335;79336;79337 95873;95874;95875;95876;95877 95873 5 QGMDLSANQDEETDQETFQLEIDRDTKK Oxidation (M) 3299.4736 0.47357322 1859 Q16658 FSCN1 Fascin yes yes 0 0 1 2 By MS/MS By MS/MS 2 0.943 3 4 1 1 3 6 54.396 54.213 4;5 1.1114E-108 17763 20211116_3439_TMUAki_TMT10x_S_F1 278.89 267.58 34689000 61100000 401950 57505000 38812000 51732000 34474000 46437000 47047000 43797000 45536000 32302000 56999000 2682800 58832000 37129000 52938000 35584000 47402000 47259000 42883000 43973000 13 13 8 13 13 13 13 13 13 13 13 12137000 20472000 196270 19598000 14901000 27696000 14129000 15369000 16423000 14813000 15615000 11302000 19099000 1082700 20176000 14280000 27438000 14443000 16231000 16579000 14490000 15088000 3 3 2 3 3 3 3 3 3 3 3 22552000 40628000 205680 37907000 23911000 24036000 20345000 31068000 30624000 28984000 29921000 21000000 37900000 1600100 38656000 22849000 25500000 21141000 31170000 30680000 28393000 28885000 10 10 6 10 10 10 10 10 10 10 10 11722000000 6395500000 5326700000 15267 1859 13995 79338;79339;79340;79341;79342;79343;79344;79345;79346 95878;95879;95880;95881;95882;95883;95884;95885;95886;95887;95888;95889;95890 95881 2476 13 QGMDLSANQDEETDQETFQLEIDRDTKK Unmodified 3283.4787 0.47865859 1859 Q16658 FSCN1 Fascin yes yes 0 0 0 2 By MS/MS By MS/MS 2 0.894 2 1 2 2 3 59.376 59.135 4 1.158E-120 19841 20211116_3439_TMUAki_TMT10x_S_F1 306.86 299.82 22126000 35911000 115060 39256000 24789000 23168000 24251000 9305500 6783100 10714000 21123000 20602000 33521000 1931900 39571000 23759000 24283000 24086000 10203000 8173800 10406000 19933000 6 6 4 6 6 6 6 6 6 6 6 13187000 20265000 43095 22739000 13545000 16173000 14829000 5159400 3555900 5929000 11899000 12278000 18918000 1114200 22925000 13021000 16634000 14626000 5824600 4406900 5758900 11220000 3 3 2 3 3 3 3 3 3 3 3 8939800 15646000 71963 16517000 11244000 6994800 9421100 4146200 3227200 4785400 9224300 8324200 14603000 817670 16646000 10739000 7649200 9459800 4378400 3766900 4647300 8712700 3 3 2 3 3 3 3 3 3 3 3 4644100000 1931800000 2712300000 15268 1859 13995 79347;79348;79349;79350;79351 95891;95892;95893;95894;95895;95896 95894 6 QGNLSSQVPLKR Unmodified 1325.7415 0.74154747 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 1 By MS/MS 1 0 1 1 35.459 35.459 3 0.0035355 8167 20211116_3428_TMUAki_TMT10x_P_F1 65.773 25.988 372710 596700 4358 631890 1236400 854610 549660 447750 501340 409480 592410 347060 556920 47058 645480 1168500 847740 591960 474630 515370 401490 568660 1 1 1 1 1 1 1 1 1 1 1 372710 596700 4358 631890 1236400 854610 549660 447750 501340 409480 592410 347060 556920 47058 645480 1168500 847740 591960 474630 515370 401490 568660 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26278000 26278000 0 15269 1433 13996 79352 95897 95897 1 QGPEGLEVSFR Unmodified 1217.6041 0.60405094 2281 Q8TDP1 RNASEH2C Ribonuclease H2 subunit C yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 49.835 49.723 2 2.4032E-07 14286 20211116_3431_TMUAki_TMT10x_P_F4 117.8 87.454 3943500 6112300 0 6861000 3701100 3494000 3284700 4683900 4265500 4340300 5099700 3671600 5706200 302330 6896100 3536900 3793900 3383900 4692000 4326100 4253200 4893700 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3943500 6112300 0 6861000 3701100 3494000 3284700 4683900 4265500 4340300 5099700 3671600 5706200 302330 6896100 3536900 3793900 3383900 4692000 4326100 4253200 4893700 2 2 0 2 2 2 2 2 2 2 2 323490000 0 323490000 15270 2281 13997 79353;79354;79355 95898;95899;95900 95898 3 QGPGPGGPK Unmodified 793.40825 0.40825167 777 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 By MS/MS 4.5 0.5 2 2 4 28.894 28.881 2;3 0.0015456 6259 20211116_3433_TMUAki_TMT10x_P_F5 96.711 61.462 1268800 2089000 44702 1775200 1408500 2031300 1297400 905640 1020600 1010900 1419300 1181700 1948100 146600 1837000 1350300 2028200 1313300 980750 1064600 982970 1356800 4 4 3 4 4 4 4 4 4 4 4 1268800 2089000 44702 1775200 1408500 2031300 1297400 905640 1020600 1010900 1419300 1181700 1948100 146600 1837000 1350300 2028200 1313300 980750 1064600 982970 1356800 4 4 3 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 46168000 46168000 0 15271 777 13998 79356;79357;79358;79359 95901;95902;95903;95904 95903 4 QGPLHGMLINTPYVTK Oxidation (M) 1783.9291 0.92909025 1591 Q13085;Q13085-4;Q13085-3;Q13085-2 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 0 0 1 0 By MS/MS 1 0 1 1 50.137 49.875 3 0.0016366 16026 20211116_3439_TMUAki_TMT10x_S_F1 65.716 44.159 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15272 1591 13999 79360 95905 95905 2148 1 QGQETAVAPSLVAPALNKPK Unmodified 2018.116 0.1160394 1824 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 0 0 0 1 By MS/MS By MS/MS 5.67 3.3 2 4 3 3 53.484 53.443 3;4 2.8331E-41 14974 20211116_3447_TMUAki_TMT10x_S_F8 199.41 188.35 45196000 76015000 170500 88342000 76267000 94264000 55027000 71417000 79983000 64239000 67100000 42082000 70976000 2714500 89341000 72591000 95152000 57700000 73550000 79820000 63035000 65128000 12 12 5 12 12 12 12 12 12 12 12 29068000 46056000 6845.7 52763000 63958000 79635000 42798000 42164000 49049000 39350000 40229000 27064000 43000000 1700200 53755000 60785000 78627000 44712000 44677000 49313000 38547000 39081000 6 6 1 6 6 6 6 6 6 6 6 16128000 29959000 163660 35580000 12309000 14630000 12229000 29253000 30933000 24890000 26871000 15017000 27976000 1014400 35587000 11806000 16525000 12988000 28874000 30507000 24488000 26047000 6 6 4 6 6 6 6 6 6 6 6 10689000000 5979900000 4709000000 15273 1824 14000 79361;79362;79363;79364;79365;79366 95906;95907;95908;95909;95910;95911;95912;95913;95914;95915;95916;95917 95916 12 QGQGQLVTCSGAFK Unmodified 1479.714 0.71401209 1847 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 44.381 44.721 3 0.0001253 11997 20211116_3436_TMUAki_TMT10x_P_F8 84.566 64.988 2377700 3531300 48980 4310700 4325500 3553000 2365700 3526100 3335000 2683600 3325600 2214300 3298000 270060 4331200 4101200 3665700 2532100 3561200 3350000 2655600 3208400 2 2 2 2 2 2 2 2 2 2 2 1303500 1800300 21554 2049400 3398700 2810300 1505600 1946300 1835100 1489300 1769200 1213800 1680800 157500 2084500 3212600 2796600 1636400 2008700 1850200 1473300 1708700 1 1 1 1 1 1 1 1 1 1 1 1074200 1731000 27426 2261300 926730 742750 860110 1579800 1499800 1194300 1556400 1000400 1617200 112560 2246700 888580 869140 895730 1552500 1499800 1182300 1499600 1 1 1 1 1 1 1 1 1 1 1 154030000 84691000 69343000 15274 1847 14001 79367;79368 95918;95919 95918 2 QGSGVILRQEEAEYVR Unmodified 1832.9381 0.93807503 1044;1045 P46108;P46108-2 CRK Adapter molecule crk no no 0 0 0 1 By MS/MS 3 0 1 1 42.111 41.795 3 1.3866E-05 13790 20211116_3441_TMUAki_TMT10x_S_F3 97.352 74.345 740780 1316500 8638 1430900 758980 528050 572420 1241500 1269900 948230 1082700 689800 1228900 69721 1438200 723580 609670 611980 1217400 1254800 938170 1050200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 740780 1316500 8638 1430900 758980 528050 572420 1241500 1269900 948230 1082700 689800 1228900 69721 1438200 723580 609670 611980 1217400 1254800 938170 1050200 1 1 1 1 1 1 1 1 1 1 1 105130000 0 105130000 15275 1044;1045 14002 79369 95920 95920 1 QGSTQGRLDDFFK Unmodified 1497.7212 0.72120596 978 P39748;P39748-2 FEN1 Flap endonuclease 1 yes no 0 0 0 1 By MS/MS 6 0 1 1 49.176 49.327 3 0.098391 13529 20211116_3445_TMUAki_TMT10x_S_F6 38.714 17.463 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15276 978 14003 79370 95921 95921 1 QGTAVEVEAESLDPTVKPVDVGGDEPEEK Unmodified 3023.4459 0.44588513 1091 P49321;P49321-3;P49321-4 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 1 By MS/MS By MS/MS 1.57 0.728 4 2 1 4 3 63.158 62.967 3;4;5 2.102E-42 19301 20211116_3428_TMUAki_TMT10x_P_F1 183.86 165.76 35522000 60001000 308560 60431000 39277000 60284000 41296000 33502000 34187000 35284000 41047000 33075000 55989000 2850000 61617000 37720000 60821000 41562000 35468000 35334000 34387000 39384000 10 10 5 10 10 10 10 10 10 10 10 27059000 46001000 141590 45433000 30789000 53261000 32722000 25706000 26121000 27326000 31529000 25195000 42922000 1995000 46507000 29570000 53157000 32886000 27575000 27055000 26622000 30247000 8 8 4 8 8 8 8 8 8 8 8 8462200 14000000 166960 14998000 8487500 7022800 8573700 7796500 8065600 7957500 9518400 7880400 13067000 854970 15111000 8150300 7663700 8676400 7892700 8279100 7765100 9137100 2 2 1 2 2 2 2 2 2 2 2 11478000000 7980000000 3497900000 15277 1091 14004 79371;79372;79373;79374;79375;79376;79377 95922;95923;95924;95925;95926;95927;95928;95929;95930;95931 95925 10 QGTFHSQQALEYGTK Unmodified 1693.806 0.80599822 1202 P53597 SUCLG1 Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial yes yes 0 0 0 0 By MS/MS By matching 5 0 2 1 1 37.138 37.213 3 0.022947 9624 20211116_3433_TMUAki_TMT10x_P_F5 42.78 19.3 569980 888790 33766 1132000 1871100 1365800 886400 740870 909450 632510 816090 530960 830240 96947 1141200 1771400 1362900 951320 781560 920880 622210 790140 1 1 1 1 1 1 1 1 1 1 1 569980 888790 33766 1132000 1871100 1365800 886400 740870 909450 632510 816090 530960 830240 96947 1141200 1771400 1362900 951320 781560 920880 622210 790140 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 83487000 57351000 26137000 15278 1202 14005 79378;79379 95932 95932 1 QGTQYTFSSIEREEYGK Unmodified 2021.933 0.93304923 1550 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 1.12 2 2 2 2 4 4 49.545 49.664 3 1.4207E-69 13388 20211116_3444_TMUAki_TMT10x_S_F5 298.84 274.25 89948000 151650000 561590 176600000 138180000 148790000 99136000 110010000 113160000 103030000 117000000 83745000 141600000 7469500 177980000 131460000 152420000 103030000 113600000 114640000 100920000 112750000 11 11 5 11 11 11 11 11 11 11 11 49777000 82033000 275200 93119000 101600000 119110000 73670000 59486000 63323000 55848000 61477000 46342000 76587000 4277000 94602000 96677000 118400000 75866000 63381000 64808000 54694000 59362000 6 6 3 6 6 6 6 6 6 6 6 40171000 69620000 286390 83481000 36578000 29677000 25467000 50521000 49832000 47186000 55526000 37403000 65014000 3192500 83381000 34788000 34020000 27167000 50215000 49831000 46222000 53387000 5 5 2 5 5 5 5 5 5 5 5 9019900000 5433200000 3586700000 15279 1550 14006 79380;79381;79382;79383;79384;79385;79386;79387 95933;95934;95935;95936;95937;95938;95939;95940;95941;95942;95943;95944 95941 12 QGTYGGYFR Unmodified 1047.4774 0.47739386 2588 Q99613;Q99613-2;B5ME19 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 38.073 38.532 2 2.8638E-05 9020 20211116_3447_TMUAki_TMT10x_S_F8 133.98 113.35 1455500 2131100 9959.1 3201600 3820500 2815000 1739700 2154900 2693700 1671100 2453100 1355200 1992500 150820 3184800 3610800 2876700 1903000 2209800 2690100 1652000 2373900 6 6 2 6 6 6 6 6 6 6 6 774620 1117900 0 1644600 3301200 2302400 1177000 1095700 1380000 870810 1243800 721170 1045100 90722 1650400 3111300 2277900 1311300 1168200 1390200 859740 1204100 2 2 0 2 2 2 2 2 2 2 2 680840 1013200 9959.1 1557000 519380 512560 562640 1059200 1313700 800320 1209300 633980 947430 60101 1534400 499480 598870 591700 1041600 1299800 792300 1169800 4 4 2 4 4 4 4 4 4 4 4 143050000 122600000 20451000 15280 2588 14007 79388;79389;79390;79391 95945;95946;95947;95948;95949;95950;95951 95951 7 QGVHAAGAAEAGPLASVPAQSAK Unmodified 2087.076 0.075965495 2482 Q96H79 ZC3HAV1L Zinc finger CCCH-type antiviral protein 1-like yes yes 0 0 0 0 By MS/MS 6 0 1 1 39.623 39.64 4 2.4817E-05 9343 20211116_3434_TMUAki_TMT10x_P_F6 75.773 65.115 713370 1103500 7670.4 1339800 1931800 1792500 969490 902870 1140900 850340 1064700 664270 1030600 83357 1356900 1828600 1778200 1039000 961300 1150500 832650 1029500 1 1 1 1 1 1 1 1 1 1 1 713370 1103500 7670.4 1339800 1931800 1792500 969490 902870 1140900 850340 1064700 664270 1030600 83357 1356900 1828600 1778200 1039000 961300 1150500 832650 1029500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 54244000 54244000 0 15281 2482 14008 79392 95952 95952 1 QGVLGIK Unmodified 713.44357 0.44357454 783 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 44.54 44.829 2 0.024115 11474 20211116_3447_TMUAki_TMT10x_S_F8 83.614 11.26 12246000 19367000 66233 19182000 20628000 19656000 13914000 13179000 13249000 11848000 15437000 11402000 18071000 1142200 19589000 19611000 19850000 14444000 13687000 13585000 11626000 14824000 3 3 2 3 3 3 3 3 3 3 3 8111100 12482000 38076 12409000 16330000 16535000 9960100 8911400 9076700 8108200 10055000 7552100 11647000 770860 12726000 15497000 16419000 10409000 9421200 9307400 7952000 9669500 2 2 1 2 2 2 2 2 2 2 2 4134500 6885300 28156 6773500 4297900 3121700 3953900 4267700 4172300 3739700 5381800 3849800 6424300 371310 6863300 4114100 3431200 4035400 4265500 4278000 3674200 5154200 1 1 1 1 1 1 1 1 1 1 1 638760000 352250000 286510000 15282 783 14009 79393;79394;79395;79396 95953;95954;95955 95955 3 QGVQVQVSTSNISSLEGAR Unmodified 1959.0021 0.0021318501 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 5.29 0.881 1 4 1 1 2 5 51.956 52.197 3 1.8523E-12 14668 20211116_3445_TMUAki_TMT10x_S_F6 130.7 115.16 9670100 17517000 156430 19840000 10503000 11516000 9112400 14447000 14637000 13284000 14215000 9004800 16354000 942560 19952000 10044000 12311000 9486900 14506000 14634000 13022000 13726000 4 4 3 4 4 4 4 4 4 4 4 1884700 3489100 56763 4274100 4270600 5202000 3124700 3376100 2928100 2841800 3089600 1755300 3258600 242570 4318700 4069400 5201200 3223400 3508700 2993200 2797400 2975400 1 1 1 1 1 1 1 1 1 1 1 7785400 14028000 99670 15566000 6232700 6314300 5987700 11071000 11709000 10442000 11126000 7249500 13095000 699990 15633000 5975000 7110200 6263500 10997000 11641000 10224000 10750000 3 3 2 3 3 3 3 3 3 3 3 2726800000 585260000 2141500000 15283 1092 14010 79397;79398;79399;79400;79401;79402;79403 95956;95957;95958;95959;95960;95961 95960 6 QGYVIYR Unmodified 897.47085 0.47085192 1308 P61313;P61313-2 RPL15 60S ribosomal protein L15 yes no 0 0 0 0 By MS/MS By MS/MS 7 0.894 2 1 2 3 2 35.544 35.831 2 0.012838 7878 20211116_3447_TMUAki_TMT10x_S_F8 95.62 45.081 2370700 3519700 25576 4134300 4985100 3416600 2619500 2067200 2007700 1775900 2943800 2207500 3286600 246070 4163500 4721500 3494500 2761800 2161200 2102400 1746500 2810800 9 9 4 9 9 9 9 9 9 9 9 1617800 2400700 18861 2832700 4229600 2855200 1829400 1391100 1361100 1200500 1961100 1506500 2241700 185920 2859600 3996200 2874400 1966600 1482500 1426500 1180300 1873200 4 4 3 4 4 4 4 4 4 4 4 752890 1119100 6714.2 1301600 755430 561400 790120 676140 646540 575430 982720 701020 1044900 60149 1303900 725260 620160 795200 678640 675960 566140 937590 5 5 1 5 5 5 5 5 5 5 5 309230000 271710000 37519000 15284 1308 14011 79404;79405;79406;79407;79408 95962;95963;95964;95965;95966;95967;95968;95969;95970 95970 9 QGYVLSSIEGR Unmodified 1207.6197 0.619701 234 O43684;O43684-2 BUB3 Mitotic checkpoint protein BUB3 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 2 2 48.548 48.715 2 2.4216E-06 13816 20211116_3431_TMUAki_TMT10x_P_F4 127.51 84.645 14591000 25861000 0 29368000 21828000 24059000 16408000 23403000 24542000 20176000 22735000 13584000 24144000 1128700 29633000 20782000 24822000 17179000 23731000 24547000 19838000 21987000 5 5 0 5 5 5 5 5 5 5 5 5961500 10092000 0 11840000 14323000 16880000 9637800 10100000 10408000 8962800 9421500 5550100 9423400 522490 12030000 13610000 16733000 10045000 10577000 10519000 8800400 9119100 2 2 0 2 2 2 2 2 2 2 2 8629700 15769000 0 17528000 7505000 7178200 6770600 13303000 14134000 11213000 13313000 8034300 14721000 606210 17603000 7171600 8088700 7134100 13154000 14028000 11038000 12868000 3 3 0 3 3 3 3 3 3 3 3 2029600000 982600000 1047000000 15285 234 14012 79409;79410;79411;79412 95971;95972;95973;95974;95975 95971 5 QHCTEEDEEEDEEEEEESFMTSR Oxidation (M) 2919.0455 0.045450324 3012 Q9NY27;Q9NY27-2;Q9NY27-3 PPP4R2 Serine/threonine-protein phosphatase 4 regulatory subunit 2 yes no 0 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 36.94 36.911 3 9.1287E-28 8745 20211116_3428_TMUAki_TMT10x_P_F1 161.64 158.5 134710 188520 198.11 283760 237950 321180 133790 207090 270070 172270 208260 125420 176260 11354 283320 225460 322330 145380 215270 266590 169690 202820 2 2 1 2 2 2 2 2 2 2 2 79881 99069 198.11 150190 213940 297360 115360 107520 140690 96433 114430 74379 92633 8684.9 151810 202670 289590 122950 118570 141090 94638 111200 1 1 1 1 1 1 1 1 1 1 1 54827 89447 0 133570 24006 23823 18436 99572 129380 75840 93836 51038 83629 2668.8 131510 22784 32741 22427 96705 125500 75047 91620 1 1 0 1 1 1 1 1 1 1 1 97598000 66172000 31426000 15286 3012 14013 79413;79414 95976;95977 95976 3069 2 QHEAPSNRPLNELLTPQGPSPR Unmodified 2437.2462 0.24621872 605 P10398 ARAF Serine/threonine-protein kinase A-Raf yes yes 0 0 0 1 By MS/MS 6 0 1 1 37.862 37.858 4 0.0088019 8558 20211116_3434_TMUAki_TMT10x_P_F6 49.106 38.252 209870 305770 0 354460 416750 438540 253400 227790 242710 198740 270890 195390 285500 17302 359420 395290 436830 265240 241370 248380 195300 260450 1 1 0 1 1 1 1 1 1 1 1 209870 305770 0 354460 416750 438540 253400 227790 242710 198740 270890 195390 285500 17302 359420 395290 436830 265240 241370 248380 195300 260450 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18360000 18360000 0 15287 605 14014 79415 95978 95978 1 QHFISFDTDR Unmodified 1264.5836 0.58364985 877 P30626;P30626-2;P30626-3 SRI Sorcin yes no 0 0 0 0 By MS/MS By MS/MS 4.5 1.12 2 2 2 2 4 4 39.735 39.783 3 0.00019418 9590 20211116_3444_TMUAki_TMT10x_S_F5 105.83 89.199 4559800 8163300 120780 8138500 9571200 9390200 6300600 9976100 9098700 7527200 8761300 4246500 7617100 560790 8323100 9102400 9502100 6648600 10040000 9122000 7452400 8462100 6 6 6 6 6 6 6 6 6 6 6 2530200 4075100 63265 4391200 6506600 7029600 4124400 4644700 4343600 3612100 4406100 2356300 3803600 324420 4496900 6182700 6945000 4314900 4811800 4411500 3570300 4248500 3 3 3 3 3 3 3 3 3 3 3 2029600 4088200 57519 3747300 3064700 2360600 2176200 5331400 4755100 3915100 4355200 1890200 3813500 236370 3826200 2919700 2557100 2333700 5228300 4710500 3882100 4213700 3 3 3 3 3 3 3 3 3 3 3 477420000 224240000 253170000 15288 877 14015 79416;79417;79418;79419;79420;79421;79422;79423 95979;95980;95981;95982;95983;95984;95985;95986 95985 8 QHFPATPLLDYALEVEK Unmodified 1970.0149 0.014928368 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 By MS/MS By MS/MS 4.62 1.58 1 1 2 1 2 1 4 4 76.899 76.885 3 1.2185E-21 25394 20211116_3431_TMUAki_TMT10x_P_F4 166.48 135.05 73681000 120230000 745460 108950000 83912000 112400000 90553000 83010000 79786000 86572000 89360000 68607000 112140000 6522500 111990000 80643000 113630000 91171000 85989000 81980000 84404000 85906000 14 14 9 14 14 14 14 14 14 14 14 37683000 62101000 306080 54222000 35176000 70516000 45037000 43374000 40570000 44229000 45651000 35087000 57918000 3243600 56115000 33986000 70222000 45029000 45495000 41649000 43161000 43880000 7 7 4 7 7 7 7 7 7 7 7 35999000 58128000 439380 54727000 48737000 41884000 45515000 39636000 39217000 42343000 43710000 33519000 54227000 3278800 55879000 46657000 43410000 46142000 40493000 40331000 41243000 42026000 7 7 5 7 7 7 7 7 7 7 7 8155700000 3476200000 4679500000 15289 1200 14016 79424;79425;79426;79427;79428;79429;79430;79431 95987;95988;95989;95990;95991;95992;95993;95994;95995;95996;95997;95998;95999;96000;96001 95988 15 QHGIPIPVTPK Unmodified 1185.687 0.68699271 476 P00966 ASS1 Argininosuccinate synthase yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 41.706 41.615 3 0.00019858 10618 20211116_3436_TMUAki_TMT10x_P_F8 85.813 66.718 1022800 1749600 24523 1839800 2068700 1927300 1256000 1630800 1865000 1383800 1756500 952550 1632900 122300 1871900 1964600 1951400 1335400 1665600 1866800 1361700 1697800 2 2 2 2 2 2 2 2 2 2 2 613400 969870 10442 1000600 1614600 1520900 834440 873320 1050000 746750 1000400 571220 905100 74609 1026400 1529200 1502800 893870 916820 1057000 734530 966540 1 1 1 1 1 1 1 1 1 1 1 409440 779730 14081 839270 454110 406420 421580 757460 815010 637040 756200 381340 727790 47694 845520 435460 448630 441500 748810 809830 627130 731300 1 1 1 1 1 1 1 1 1 1 1 196590000 124420000 72167000 15290 476 14017 79432;79433;79434 96002;96003;96004 96003 3 QHHPPYHQQHHQGPPPGGPGGR Unmodified 2402.1278 0.12777534 777 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.667 1 4 4 4 5 23.462 23.609 4;5 1.0305E-44 5086 20211116_3435_TMUAki_TMT10x_P_F7 207.43 198.8 110440 200070 28.508 187390 218170 192580 115010 127080 159170 121490 149560 102830 186640 5154.1 192140 206590 194390 123420 132350 159660 118770 144570 7 7 1 7 7 7 7 7 7 6 7 65952 121630 28.508 118060 160620 156790 76200 76283 99310 74041 88179 61408 113480 2852.6 121270 151890 155530 82423 81555 99624 72295 85408 4 4 1 4 4 4 4 4 4 3 4 44492 78442 0 69329 57549 35785 38812 50799 59863 47449 61383 41425 73161 2301.6 70869 54703 38862 41000 50791 60033 46479 59167 3 3 0 3 3 3 3 3 3 3 3 176340000 95505000 80831000 15291 777 14018 79435;79436;79437;79438;79439;79440;79441;79442;79443 96005;96006;96007;96008;96009;96010;96011 96008 7 QHIQVFIDR Unmodified 1154.6196 0.61964142 2957 Q9NUQ8;Q9NUQ8-2 ABCF3 ATP-binding cassette sub-family F member 3 yes no 0 0 0 0 By MS/MS 6 0 1 1 36.174 36.162 3 0.044207 7882 20211116_3434_TMUAki_TMT10x_P_F6 42.802 27.304 426930 611720 7014.3 675400 564170 573190 449420 247160 325340 343150 475420 397560 571030 43854 682990 538490 582900 458020 270630 341730 331190 453980 1 1 1 1 1 1 1 1 1 1 1 426930 611720 7014.3 675400 564170 573190 449420 247160 325340 343150 475420 397560 571030 43854 682990 538490 582900 458020 270630 341730 331190 453980 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9682800 9682800 0 15292 2957 14019 79444 96012 96012 1 QHLEITGGQVR Unmodified 1236.6575 0.65748349 1065 P47897;P47897-2 QARS Glutamine--tRNA ligase yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 31.054 31.039 3 0.025617 6811 20211116_3431_TMUAki_TMT10x_P_F4 50.95 9.9212 439700 651990 14528 661400 694750 739620 487040 415640 466670 409270 589680 409520 608410 53566 675240 661820 741370 504250 438760 480010 399980 565040 1 1 1 1 1 1 1 1 1 1 1 439700 651990 14528 661400 694750 739620 487040 415640 466670 409270 589680 409520 608410 53566 675240 661820 741370 504250 438760 480010 399980 565040 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26353000 26353000 0 15293 1065 14020 79445;79446 96013 96013 1 QHLGATGGPGAQLGASFLQAR Unmodified 2036.0552 0.055170474 2992 Q9NWW5 CLN6 Ceroid-lipofuscinosis neuronal protein 6 yes yes 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 51.503 51.244 3 3.1709E-19 14833 20211116_3440_TMUAki_TMT10x_S_F2 143.4 116.75 1488200 2653100 0 2771700 1560900 1442900 1440000 2333500 2175900 1948200 2376100 1385500 2476100 113200 2799400 1492900 1572000 1489800 2316100 2188600 1918600 2285900 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1488200 2653100 0 2771700 1560900 1442900 1440000 2333500 2175900 1948200 2376100 1385500 2476100 113200 2799400 1492900 1572000 1489800 2316100 2188600 1918600 2285900 2 2 0 2 2 2 2 2 2 2 2 166420000 0 166420000 15294 2992 14021 79447;79448 96014;96015 96014 2 QHLQATGVSLGGVDLTVR Unmodified 1850.001 0.0010096381 1657 Q13618;Q13618-3;Q13618-2 CUL3 Cullin-3 yes no 0 0 0 0 By MS/MS 7 0 1 1 52.028 52.531 3 0.11047 16860 20211116_3446_TMUAki_TMT10x_S_F7 23.293 1.0955 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15295 1657 14022 79449 96016 96016 1 QHMENEMAHYACDCWDAESK 2 Oxidation (M) 2542.9246 0.92462786 1001 P41250 GARS Glycine--tRNA ligase yes yes 0 0 2 0 By MS/MS 2 0 1 1 34.174 33.951 4 0.0016708 9145 20211116_3429_TMUAki_TMT10x_P_F2 59.857 57.449 168710 246700 0 303990 437030 468530 265150 173950 194230 140500 229350 157060 230410 13783 308530 414460 460540 275740 190730 201950 138600 220160 1 1 0 1 1 1 1 1 1 1 1 168710 246700 0 303990 437030 468530 265150 173950 194230 140500 229350 157060 230410 13783 308530 414460 460540 275740 190730 201950 138600 220160 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37728000 37728000 0 15296 1001 14023 79450 96017 96017 1288;1289 1 QHPFYFK Unmodified 965.47594 0.4759373 2714 Q9BXJ9 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes yes 0 0 0 0 By MS/MS 1 0 1 1 41.115 41.115 3 0.041534 10442 20211116_3428_TMUAki_TMT10x_P_F1 51.787 32.001 1119600 1657000 39906 1878400 2660000 2203700 1305100 1533400 1316300 1265300 1426500 1042700 1547000 151590 1905500 2518900 2209900 1395000 1584900 1342500 1246800 1372700 1 1 1 1 1 1 1 1 1 1 1 1119600 1657000 39906 1878400 2660000 2203700 1305100 1533400 1316300 1265300 1426500 1042700 1547000 151590 1905500 2518900 2209900 1395000 1584900 1342500 1246800 1372700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 91894000 91894000 0 15297 2714 14024 79451 96018 96018 1 QHPQPYIFPDSPGGTSYER Unmodified 2175.0021 0.0021318501 3354 Q9Y6M9 NDUFB9 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 44.113 44.256 3 1.9451E-09 11230 20211116_3444_TMUAki_TMT10x_S_F5 120.11 97.006 350050 647920 4536.1 793420 330690 305670 262760 711010 717980 543830 636690 325960 605120 32978 791850 315650 350590 284170 697440 707620 538020 616710 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 350050 647920 4536.1 793420 330690 305670 262760 711010 717980 543830 636690 325960 605120 32978 791850 315650 350590 284170 697440 707620 538020 616710 1 1 1 1 1 1 1 1 1 1 1 317230000 0 317230000 15298 3354 14025 79452;79453 96019;96020 96020 2 QHPYTFPGGSGTVFAR Unmodified 1720.8322 0.8321534 1556 Q10471 GALNT2 Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 44.784 44.635 3 0.00025893 12064 20211116_3440_TMUAki_TMT10x_S_F2 69.613 47.381 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15299 1556 14026 79454;79455 96021;96022 96022 2 QHQDMPAPRPPGPRPAPPQQEGPPEQQPPQ Oxidation (M) 3304.5796 0.57959088 3091 Q9UBV2 SEL1L Protein sel-1 homolog 1 yes yes 0 0 1 2 By MS/MS 4.5 0.5 1 1 2 31.226 31.211 4 1.933E-10 6877 20211116_3431_TMUAki_TMT10x_P_F4 95.652 84.749 86024 126300 0 166280 234910 258590 119380 195960 220910 136630 133520 80078 118000 6792.6 168190 222180 256330 130270 200620 217200 135890 131510 2 2 0 2 2 2 2 2 2 2 2 86024 126300 0 166280 234910 258590 119380 195960 220910 136630 133520 80078 118000 6792.6 168190 222180 256330 130270 200620 217200 135890 131510 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 56841000 56841000 0 15300 3091 14027 79456;79457 96023;96024 96023 3133 2 QHQLYVGVLGSK Unmodified 1327.7248 0.72483478 382 O94760 DDAH1 N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 44.707 44.601 3 4.6224E-06 13863 20211116_3439_TMUAki_TMT10x_S_F1 107.39 86.086 2254600 3428200 24526 3801900 4281100 4747500 2794000 3700700 3883700 3161800 3465300 2099400 3200300 238160 3866300 4069000 4754500 2945600 3799300 3888400 3110100 3355800 2 2 2 2 2 2 2 2 2 2 2 1404000 2094400 17736 2355900 3515600 3968100 2163000 2305600 2437800 1960700 2146600 1307400 1955300 162500 2409100 3338000 3905600 2273200 2417800 2457700 1929100 2079700 1 1 1 1 1 1 1 1 1 1 1 850600 1333800 6789.7 1446000 765410 779340 631030 1395100 1445900 1201100 1318700 792040 1245000 75655 1457300 730940 848900 672330 1381600 1430700 1181000 1276100 1 1 1 1 1 1 1 1 1 1 1 452560000 312850000 139720000 15301 382 14028 79458;79459;79460 96025;96026;96027 96026 3 QHQMQLVDSIVR Oxidation (M) 1468.7456 0.74564657 641 P12270;P12270-2 TPR Nucleoprotein TPR yes no 0 0 1 0 By MS/MS 6 1 1 1 2 35.518 35.948 3 0.00038201 7782 20211116_3444_TMUAki_TMT10x_S_F5 81.494 65.24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15302 641 14029 79461;79462 96028;96029 96028 676 2 QHTFVETESVR Unmodified 1331.647 0.64697839 1072 P48444 ARCN1 Coatomer subunit delta yes yes 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 30.485 30.381 3 1.7818E-08 9215 20211116_3441_TMUAki_TMT10x_S_F3 147.63 124.25 256150 453170 7865.4 433450 383420 350010 308810 246590 308110 256790 360680 238540 422780 28220 442340 366100 359390 317120 256240 315340 250370 346310 2 2 1 2 2 2 2 2 2 2 2 132840 220590 7865.4 211730 244530 238600 162480 123120 150260 119650 176830 123750 205800 19908 217030 232880 238810 168720 130900 154340 117000 169760 1 1 1 1 1 1 1 1 1 1 1 123300 232580 0 221720 138890 111410 146330 123470 157840 137140 183850 114790 216980 8311.6 225300 133220 120570 148390 125330 161000 133370 176550 1 1 0 1 1 1 1 1 1 1 1 72676000 28710000 43966000 15303 1072 14030 79463;79464;79465;79466 96030;96031 96031 2 QHVIDGEK Unmodified 924.46649 0.46649483 3217 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 29.205 29.192 3 0.03521 6004 20211116_3431_TMUAki_TMT10x_P_F4 49.418 25.263 1177200 2048900 0 1607100 3330200 2804300 1692300 1461500 1815900 1170000 1599800 1095900 1910200 111230 1688600 3150900 2752800 1806000 1545000 1834300 1154700 1549900 1 1 0 1 1 1 1 1 1 1 1 1177200 2048900 0 1607100 3330200 2804300 1692300 1461500 1815900 1170000 1599800 1095900 1910200 111230 1688600 3150900 2752800 1806000 1545000 1834300 1154700 1549900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19981000 19981000 0 15304 3217 14031 79467;79468 96032 96032 1 QHVTEAFQFHF Unmodified 1389.6466 0.64658446 201 O43175 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 55.581 55.88 3 1.1184E-07 15866 20211116_3434_TMUAki_TMT10x_P_F6 115 101.23 3478700 6400500 237250 6906600 4342500 4059900 4056800 4859200 4450600 4621800 5228500 3240700 5974200 521610 6967600 4170900 4329500 4142100 4893000 4538100 4523700 5019700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3478700 6400500 237250 6906600 4342500 4059900 4056800 4859200 4450600 4621800 5228500 3240700 5974200 521610 6967600 4170900 4329500 4142100 4893000 4538100 4523700 5019700 2 2 2 2 2 2 2 2 2 2 2 877610000 0 877610000 15305 201 14032 79469;79470;79471 96033;96034;96035 96033 3 QHYIDLK Unmodified 915.48142 0.48141661 770 P22392-2;P22392;O60361 NME2;NME2P1 Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 36.211 36.386 3 0.0041447 9324 20211116_3433_TMUAki_TMT10x_P_F5 94.114 47.033 974070 1431000 0 1587800 790780 826890 1048800 988580 899550 920450 1208600 906940 1335800 76254 1597400 764600 892950 1045700 994920 932630 901760 1156300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 974070 1431000 0 1587800 790780 826890 1048800 988580 899550 920450 1208600 906940 1335800 76254 1597400 764600 892950 1045700 994920 932630 901760 1156300 1 1 0 1 1 1 1 1 1 1 1 63213000 0 63213000 15306 770 14033 79472;79473;79474 96036;96037;96038 96037 3 QHYIDLKDRPFFPGLVK Unmodified 2072.1207 0.12073084 770 P22392-2;P22392;O60361 NME2;NME2P1 Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase yes no 0 0 0 2 By MS/MS By MS/MS 3 0 2 1 1 59.706 59.368 5 2.5687E-21 20966 20211116_3441_TMUAki_TMT10x_S_F3 163.35 146.07 9733700 17179000 281090 12707000 14599000 22515000 14444000 19398000 13085000 15318000 12999000 9065100 16013000 1134200 13426000 14011000 22262000 14617000 19758000 13368000 15128000 12542000 2 2 1 2 2 2 2 2 2 2 2 5921900 9528500 281090 7398800 7650200 17644000 10149000 11514000 7308100 9103000 7035900 5516000 8883100 777140 7851600 7415200 17205000 10076000 11944000 7549400 8989800 6795700 1 1 1 1 1 1 1 1 1 1 1 3811800 7650900 0 5307900 6948800 4871000 4295400 7884400 5776500 6215100 5962800 3549200 7130300 357010 5573900 6595900 5056900 4541600 7814300 5818400 6138700 5746400 1 1 0 1 1 1 1 1 1 1 1 2099100000 1073800000 1025300000 15307 770 14034 79475;79476 96039;96040 96040 2 QIATLHAQVADMK Oxidation (M) 1440.7395 0.73949856 934 P35579 MYH9 Myosin-9 yes yes 0 0 1 0 By MS/MS 7 0 1 1 36.769 37.454 3 0.01562 10746 20211116_3446_TMUAki_TMT10x_S_F7 57.414 42.538 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15308 934 14035 79477 96041 96041 1181 1 QICLVMLETLSQSPQGR Oxidation (M) 1974.9867 0.98668148 1791 Q15365 PCBP1 Poly(rC)-binding protein 1 yes yes 0 0 1 0 By MS/MS 7 0 1 1 67.437 67.967 2 0.00062073 22689 20211116_3435_TMUAki_TMT10x_P_F7 73.881 56.369 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15309 1791 14036 79478 96042 96042 2406 1 QIDAPGDPFPLNPR Unmodified 1535.7732 0.77324153 1878 Q2NL82 TSR1 Pre-rRNA-processing protein TSR1 homolog yes yes 0 0 0 0 By MS/MS 4 0 1 1 59.83 59.954 2 0.0039121 18490 20211116_3431_TMUAki_TMT10x_P_F4 64.73 43.334 1626600 2668700 51516 2945400 2197700 3620400 2076300 2005800 2018400 2088400 2172600 1514900 2491200 190870 2995300 2107300 3610300 2110600 2123300 2061400 2036200 2091100 1 1 1 1 1 1 1 1 1 1 1 1626600 2668700 51516 2945400 2197700 3620400 2076300 2005800 2018400 2088400 2172600 1514900 2491200 190870 2995300 2107300 3610300 2110600 2123300 2061400 2036200 2091100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 350210000 350210000 0 15310 1878 14037 79479 96043 96043 1 QIDDILSVASVRPAVLQVECHPYLAQNELIAHCQAR Unmodified 4113.0888 0.088802148 669 P14550 AKR1A1 Alcohol dehydrogenase [NADP(+)] yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.2 2 1 1 2 3 3 74.186 74.176 5 6.766E-49 23861 20211116_3428_TMUAki_TMT10x_P_F1 185.28 184.93 17791000 30020000 569550 27803000 19522000 30674000 24316000 20952000 16369000 15874000 19540000 16570000 28004000 1558700 28563000 18873000 30853000 24168000 21642000 17113000 15713000 18751000 5 5 4 5 5 5 5 5 5 5 5 12294000 20642000 329710 18325000 12552000 24558000 17133000 15792000 11865000 10391000 12468000 11449000 19252000 858800 18952000 12170000 24437000 16976000 16337000 12323000 10371000 12009000 3 3 2 3 3 3 3 3 3 3 3 5497500 9378000 239840 9477300 6969800 6116200 7182900 5160400 4504200 5483900 7071700 5120500 8751100 699930 9611100 6702900 6416700 7191900 5304700 4790600 5342500 6742300 2 2 2 2 2 2 2 2 2 2 2 11682000000 6083100000 5598500000 15311 669 14038 79480;79481;79482;79483;79484;79485 96044;96045;96046;96047;96048 96044 5 QIDQFLVVAR Unmodified 1187.6663 0.66625727 384;1621 O94776;O94776-2;Q13330;Q13330-3;Q9BTC8;Q9BTC8-2;Q13330-2 MTA2;MTA1;MTA3 Metastasis-associated protein MTA2;Metastasis-associated protein MTA1;Metastasis-associated protein MTA3 no no 0 0 0 0 By MS/MS By MS/MS 6.8 0.748 2 2 1 2 3 63.084 63.308 2 0.00029729 18862 20211116_3434_TMUAki_TMT10x_P_F6 114.39 84.209 201190000 380970000 5808700 269920000 153170000 348000000 210270000 228160000 252690000 284400000 249430000 187370000 355070000 21372000 284370000 148650000 347010000 211610000 239710000 255100000 275440000 240720000 5 5 4 5 5 5 5 5 5 5 5 176850000 335190000 4670500 232000000 123900000 313060000 174160000 195660000 216190000 246350000 211360000 164700000 312380000 18224000 245170000 120340000 311290000 175330000 206370000 217930000 238510000 204040000 3 3 2 3 3 3 3 3 3 3 3 24340000 45789000 1138200 37922000 29269000 34936000 36107000 32499000 36496000 38052000 38076000 22671000 42697000 3147700 39198000 28306000 35720000 36280000 33332000 37168000 36935000 36681000 2 2 2 2 2 2 2 2 2 2 2 3362400000 1564600000 1797700000 15312 384;1621 14039 79486;79487;79488;79489;79490 96049;96050;96051 96049 3 QIEIQFAQGDR Unmodified 1303.6521 0.65206377 339;2322 O75494;O75494-3;O75494-4;O75494-5;O75494-6;O75494-2;Q8WXF0 SRSF10;SRSF12 Serine/arginine-rich splicing factor 10;Serine/arginine-rich splicing factor 12 no no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 50.36 50.319 2 2.526E-07 17264 20211116_3441_TMUAki_TMT10x_S_F3 139.98 108.75 15835000 26099000 275300 26613000 24421000 27935000 19644000 29077000 28486000 26048000 24331000 14745000 24355000 1648300 27133000 23310000 28403000 20449000 29416000 28446000 25565000 23600000 4 4 3 4 4 4 4 4 4 4 4 7163700 11630000 143940 11779000 13335000 19367000 10894000 13484000 13654000 11466000 10875000 6671100 10853000 814500 12120000 12734000 19129000 11263000 13946000 13671000 11282000 10577000 2 2 2 2 2 2 2 2 2 2 2 8671100 14469000 131360 14834000 11086000 8568700 8749500 15593000 14833000 14582000 13455000 8074300 13502000 833790 15014000 10577000 9273500 9185500 15469000 14775000 14283000 13023000 2 2 1 2 2 2 2 2 2 2 2 2070700000 1177100000 893640000 15313 339;2322 14040 79491;79492;79493;79494 96052;96053;96054;96055 96054 4 QIEIQFAQGDRK Unmodified 1431.747 0.74702678 339;2322 O75494;O75494-3;O75494-4;O75494-5;O75494-6;O75494-2;Q8WXF0 SRSF10;SRSF12 Serine/arginine-rich splicing factor 10;Serine/arginine-rich splicing factor 12 no no 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 44.794 44.92 3 5.414E-12 11470 20211116_3444_TMUAki_TMT10x_S_F5 169.79 128.55 21919000 34702000 417480 40436000 31624000 31080000 21937000 29079000 28925000 26438000 31170000 20411000 32402000 2342200 40707000 30104000 32194000 22974000 29587000 29200000 25930000 29999000 7 7 7 7 7 7 7 7 7 7 7 10790000 16533000 138290 18270000 20473000 21144000 11968000 13162000 12976000 12338000 13791000 10047000 15434000 1159100 18559000 19425000 21183000 12616000 13761000 13186000 12084000 13278000 3 3 3 3 3 3 3 3 3 3 3 11129000 18168000 279180 22166000 11151000 9936100 9968600 15916000 15948000 14100000 17379000 10364000 16968000 1183200 22148000 10679000 11011000 10358000 15827000 16014000 13846000 16721000 4 4 4 4 4 4 4 4 4 4 4 1100700000 499820000 600880000 15314 339;2322 14041 79495;79496;79497;79498 96056;96057;96058;96059;96060;96061;96062 96059 7 QIEYEYK Unmodified 971.46001 0.46001246 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 41.84 41.975 2 0.0052869 12664 20211116_3430_TMUAki_TMT10x_P_F3 109.21 51.655 2230500 3754900 2518.7 4083500 4278200 3159400 2769600 2530800 2879900 2514300 3166200 2076800 3505000 213490 4128800 4064200 3261400 2891600 2604400 2935100 2456300 3045500 3 3 2 3 3 3 3 3 3 3 3 883280 1335500 2518.7 1502100 2486500 1829300 1049700 1007600 1153400 926100 1191100 822440 1246800 98031 1525500 2348200 1824900 1143100 1063500 1170200 907830 1147900 2 2 2 2 2 2 2 2 2 2 2 1347200 2419400 0 2581400 1791700 1330100 1719900 1523300 1726500 1588200 1975100 1254400 2258200 115460 2603300 1716000 1436500 1748500 1540900 1764900 1548500 1897600 1 1 0 1 1 1 1 1 1 1 1 81269000 41047000 40222000 15315 748 14042 79499;79500 96063;96064;96065 96063 3 QIFDEYENETFLCHR Unmodified 1999.8734 0.87342586 3266 Q9Y3A3;Q9Y3A3-2;Q9Y3A3-3 MOB4 MOB-like protein phocein yes no 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 62.752 62.429 3 1.1427E-09 20718 20211116_3429_TMUAki_TMT10x_P_F2 126.48 119.9 7372900 13825000 40732 11634000 10649000 10771000 9229200 9860200 9520200 9380600 10654000 6864700 12892000 628620 12010000 10174000 11005000 9444800 10057000 9712700 9181300 10242000 3 3 2 3 3 3 3 3 3 3 3 1835000 3532200 21760 3007200 2391600 4319100 2594000 2620200 2385300 2561300 3076500 1708800 3294000 180210 3124600 2299600 4280900 2614100 2748000 2460300 2503900 2946400 1 1 1 1 1 1 1 1 1 1 1 5537900 10293000 18972 8626500 8257900 6451400 6635200 7240000 7135000 6819300 7577400 5155900 9598400 448410 8885700 7874100 6724200 6830700 7308700 7252400 6677400 7295900 2 2 1 2 2 2 2 2 2 2 2 1115900000 689280000 426650000 15316 3266 14043 79501;79502;79503 96066;96067;96068 96066 3 QIFETIYYGALEASCDLAK Unmodified 2191.0507 0.050721527 791 P23921 RRM1 Ribonucleoside-diphosphate reductase large subunit yes yes 0 0 0 0 By MS/MS By matching 7 0 2 1 1 82.174 82.196 3 0.00016039 28728 20211116_3435_TMUAki_TMT10x_P_F7 65.25 52.401 1248600 1959000 0 1919100 1054400 1858800 1359000 898420 806070 847260 1303400 1162500 1827800 93339 1959700 1018200 1875700 1345500 960390 861880 829590 1242000 1 1 0 1 1 1 1 1 1 1 1 1248600 1959000 0 1919100 1054400 1858800 1359000 898420 806070 847260 1303400 1162500 1827800 93339 1959700 1018200 1875700 1345500 960390 861880 829590 1242000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 174560000 36468000 138100000 15317 791 14044 79504;79505 96069 96069 1 QIFLGGVDKR Unmodified 1131.64 0.64004252 502 P05141 SLC25A5 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 45.562 45.427 3 0.00015326 12146 20211116_3428_TMUAki_TMT10x_P_F1 115.41 73.52 15561000 23071000 321610 28111000 29621000 25579000 18384000 18101000 19471000 16432000 21328000 14491000 21546000 1759900 28284000 28137000 26047000 19269000 18731000 19827000 16117000 20517000 5 5 4 5 5 5 5 5 5 5 5 10821000 15716000 221930 19317000 25784000 21696000 14089000 11117000 12577000 10465000 14373000 10077000 14678000 1286600 19487000 24440000 21718000 14855000 11817000 12925000 10248000 13809000 3 3 2 3 3 3 3 3 3 3 3 4740300 7355400 99681 8794900 3837100 3883100 4295800 6984200 6893600 5966800 6955400 4414500 6868700 473260 8797100 3696800 4328500 4413900 6914100 6901500 5869400 6707700 2 2 2 2 2 2 2 2 2 2 2 921560000 713790000 207770000 15318 502 14045 79506;79507;79508;79509 96070;96071;96072;96073;96074 96070 5 QIFNGTFVK Unmodified 1052.5655 0.56548059 716 P18124 RPL7 60S ribosomal protein L7 yes yes 0 0 0 0 By MS/MS By MS/MS 1.4 0.49 3 2 2 3 58.325 58.129 2 6.0697E-06 17291 20211116_3428_TMUAki_TMT10x_P_F1 160.59 109.52 31755000 54330000 243990 56774000 53619000 56835000 35560000 53007000 50817000 44359000 50000000 29568000 50705000 3102400 57747000 50969000 57810000 37487000 53828000 51001000 43680000 48258000 5 5 3 5 5 5 5 5 5 5 5 15026000 24493000 0 25789000 36699000 41718000 22969000 22272000 23277000 19143000 21367000 13990000 22859000 1485400 26456000 34840000 41080000 24026000 23533000 23599000 18825000 20671000 2 2 0 2 2 2 2 2 2 2 2 16729000 29837000 243990 30985000 16920000 15117000 12591000 30735000 27540000 25216000 28632000 15578000 27846000 1617000 31292000 16130000 16730000 13461000 30296000 27402000 24854000 27587000 3 3 3 3 3 3 3 3 3 3 3 3268500000 2163500000 1104900000 15319 716 14046 79510;79511;79512;79513;79514 96075;96076;96077;96078;96079;96080 96075 6 QIGENLIVPGGVK Unmodified 1322.7558 0.75580056 1852;1691 Q16555;Q16555-2;Q14194-2;Q14194 DPYSL2;CRMP1 Dihydropyrimidinase-related protein 2;Dihydropyrimidinase-related protein 1 no no 0 0 0 0 By MS/MS By MS/MS 6.89 0.916 3 4 13 7 6 21 60.46 60.642 2;3 1.5154E-19 30800 20211116_3446_TMUAki_TMT10x_S_F7 196.48 150.33 39273000 66202000 198940 69368000 58418000 72081000 44347000 55573000 55762000 48565000 52381000 36567000 61785000 3568600 70584000 55663000 72893000 46072000 57126000 56109000 47720000 50635000 24 24 8 24 24 24 24 24 24 24 24 25139000 41033000 186640 43738000 43991000 59567000 33032000 34681000 35385000 30156000 32553000 23408000 38298000 2448200 44666000 41912000 59147000 34151000 36382000 35795000 29639000 31491000 5 5 3 5 5 5 5 5 5 5 5 14134000 25169000 12293 25630000 14427000 12515000 11316000 20892000 20377000 18409000 19828000 13160000 23487000 1120400 25918000 13752000 13747000 11921000 20744000 20314000 18081000 19144000 19 19 5 19 19 19 19 19 19 19 19 8756900000 6047500000 2709400000 15320 1852;1691 14047 79515;79516;79517;79518;79519;79520;79521;79522;79523;79524;79525;79526;79527;79528;79529;79530;79531;79532;79533;79534;79535;79536;79537;79538;79539;79540;79541 96081;96082;96083;96084;96085;96086;96087;96088;96089;96090;96091;96092;96093;96094;96095;96096;96097;96098;96099;96100;96101;96102;96103;96104;96105;96106;96107;96108;96109;96110;96111 96093 31 QIGIDPPR Unmodified 894.49232 0.49231565 1032 P43686;P43686-2 PSMC4 26S protease regulatory subunit 6B yes no 0 0 0 0 By MS/MS 4 0 1 1 35.813 35.92 2 0.015104 9344 20211116_3442_TMUAki_TMT10x_S_F4 77.282 55.982 187460 320270 2040 343680 207530 167210 212870 182150 189430 181830 257770 174560 298940 17724 346320 199250 181570 214920 184440 196170 177600 246550 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 187460 320270 2040 343680 207530 167210 212870 182150 189430 181830 257770 174560 298940 17724 346320 199250 181570 214920 184440 196170 177600 246550 1 1 1 1 1 1 1 1 1 1 1 8481800 0 8481800 15321 1032 14048 79542 96112 96112 1 QIGNVAALPGIVHR Unmodified 1443.831 0.83103118 3285 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 50.59 50.383 3 1.5246E-06 15713 20211116_3429_TMUAki_TMT10x_P_F2 112.44 88.056 6309500 10410000 152660 11818000 8913700 10639000 6214500 7951500 8182400 7527900 8736500 5875900 9719000 701850 11939000 8488200 10851000 6505700 8207500 8257800 7369600 8410600 2 2 2 2 2 2 2 2 2 2 2 3129800 4994400 81791 5128300 6214400 7744100 3928800 3903600 4138800 3616700 4349200 2914700 4660800 378910 5261400 5906200 7641500 4111100 4154100 4208800 3544100 4189000 1 1 1 1 1 1 1 1 1 1 1 3179800 5415700 70874 6689200 2699200 2895000 2285700 4048000 4043600 3911200 4387200 2961200 5058200 322950 6677400 2582000 3209200 2394500 4053400 4049000 3825500 4221600 1 1 1 1 1 1 1 1 1 1 1 2918600000 1478800000 1439700000 15322 3285 14049 79543;79544 96113;96114 96113 2 QIGVEHVVVYVNK Unmodified 1482.8195 0.81946344 1097 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 2 3 49.983 50.238 3 1.0122E-11 13699 20211116_3447_TMUAki_TMT10x_S_F8 145.31 131.05 20645000 32618000 386520 36968000 21964000 23052000 19759000 18151000 18075000 16284000 22019000 19225000 30452000 1712900 37198000 21026000 24232000 20106000 18646000 18602000 15980000 21119000 5 5 3 5 5 5 5 5 5 5 5 10199000 15405000 139500 18060000 11860000 13188000 9359000 8086600 7883800 7433100 9802600 9496900 14384000 652760 18164000 11317000 13621000 9578300 8459800 8153000 7286500 9396900 2 2 1 2 2 2 2 2 2 2 2 10447000 17213000 247020 18908000 10104000 9864700 10400000 10064000 10191000 8850500 12217000 9728300 16068000 1060100 19034000 9708600 10612000 10527000 10186000 10449000 8693900 11722000 3 3 2 3 3 3 3 3 3 3 3 3712400000 1343300000 2369100000 15323 1097 14050 79545;79546;79547;79548;79549 96115;96116;96117;96118;96119 96119 5 QIHEEALSK Unmodified 1053.5455 0.54547343 1919 Q5JRX3;Q5JRX3-2;Q5JRX3-3 PITRM1 Presequence protease, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 61.506 62.109 2 0.068091 20245 20211116_3435_TMUAki_TMT10x_P_F7 51.995 2.1822 14723000 25163000 32076 27594000 19699000 20872000 14721000 19146000 17154000 16916000 19901000 13708000 23489000 1231200 27879000 18760000 21638000 15268000 19486000 17442000 16613000 19113000 2 2 1 2 2 2 2 2 2 2 2 5614900 9558300 32076 10354000 11265000 13983000 7871500 7177300 6369100 6579700 7338300 5228200 8921900 574540 10561000 10718000 13869000 8115300 7623000 6579600 6450700 7048900 1 1 1 1 1 1 1 1 1 1 1 9108000 15605000 0 17240000 8433900 6888100 6850000 11968000 10785000 10336000 12563000 8479800 14567000 656680 17318000 8041200 7769900 7152800 11863000 10862000 10162000 12064000 1 1 0 1 1 1 1 1 1 1 1 1401400000 826310000 575080000 15324 1919 14051 79550;79551 96120;96121 96120 2 QIHKFEELNR Unmodified 1312.6888 0.68878362 3224 Q9Y262;Q9Y262-2 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 33.946 34.01 4 0.0018658 7049 20211116_3444_TMUAki_TMT10x_S_F5 80.737 64.205 1667100 2495500 11907 2502100 3338300 2722200 1903500 1583300 1532000 1475600 1986600 1552300 2328600 166270 2555400 3165100 2734000 1994300 1664000 1590900 1445600 1902300 2 2 1 2 2 2 2 2 2 2 2 1303300 1937600 11907 1901800 2983300 2450200 1536800 1286200 1196200 1181900 1556900 1213600 1807800 142680 1950900 2824900 2436100 1623900 1363300 1244700 1158600 1490700 1 1 1 1 1 1 1 1 1 1 1 363820 557960 0 600300 354920 272010 366700 297080 335750 293690 429740 338700 520800 23588 604500 340190 297920 370380 300680 346260 286970 411650 1 1 0 1 1 1 1 1 1 1 1 110700000 98940000 11756000 15325 3224 14052 79552;79553 96122;96123 96123 2 QIIGPFQR Unmodified 957.5396 0.53960019 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 46.663 46.567 2 0.0025465 14690 20211116_3439_TMUAki_TMT10x_S_F1 108.24 39.323 7191400 11735000 138660 14011000 7495600 6796300 6587000 10603000 10563000 8905800 10788000 6696900 10959000 725440 14025000 7172400 7454200 6852100 10538000 10580000 8767800 10400000 5 5 4 5 5 5 5 5 5 5 5 439060 710580 11924 903190 1126900 1107900 759770 790610 669790 534970 743230 408900 663770 57147 910860 1072000 1108900 787080 812200 687940 533020 714700 1 1 1 1 1 1 1 1 1 1 1 6752300 11025000 126740 13108000 6368700 5688400 5827200 9812500 9892900 8370800 10045000 6288000 10295000 668300 13114000 6100400 6345300 6065000 9725400 9891800 8234800 9685200 4 4 3 4 4 4 4 4 4 4 4 269750000 112570000 157180000 15326 1723 14053 79554;79555;79556;79557 96124;96125;96126;96127;96128;96129 96126 6 QIIGRPVVVK Unmodified 1107.7128 0.71281353 1352 P62312 LSM6 U6 snRNA-associated Sm-like protein LSm6 yes yes 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 40.491 40.324 3 4.9747E-09 13170 20211116_3441_TMUAki_TMT10x_S_F3 134.51 110.42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15327 1352 14054 79558;79559;79560 96130;96131;96132 96132 3 QIILEKEETEELK Unmodified 1600.856 0.85596811 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 1 By MS/MS By MS/MS 3.62 0.992 1 3 2 2 5 3 53.993 53.941 3;4 3.8852E-19 16411 20211116_3442_TMUAki_TMT10x_S_F4 185.62 120.22 108570000 184420000 4800900 197710000 186210000 199110000 119540000 155770000 152910000 132880000 149660000 101120000 172140000 14211000 200100000 177120000 201780000 124930000 159880000 153980000 130720000 144470000 11 11 9 10 11 11 10 11 10 11 10 62227000 106450000 3640400 109540000 141450000 158400000 83243000 95818000 86480000 73209000 82415000 57965000 99338000 9421600 111580000 134350000 156950000 86731000 99903000 87693000 72431000 79628000 7 7 6 6 7 7 6 7 6 7 6 46343000 77976000 1160500 88167000 44762000 40711000 36299000 59955000 66427000 59667000 67245000 43157000 72798000 4789600 88516000 42770000 44833000 38195000 59979000 66288000 58286000 64844000 4 4 3 4 4 4 4 4 4 4 4 7083100000 5090600000 1992400000 15328 647 14055 79561;79562;79563;79564;79565;79566;79567;79568 96133;96134;96135;96136;96137;96138;96139;96140;96141;96142;96143 96141 11 QIILEKEETEELKR Unmodified 1756.9571 0.95707914 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 2 By MS/MS By MS/MS 4.29 1.03 2 2 2 1 3 4 47.128 47.191 4 3.098E-29 13653 20211116_3442_TMUAki_TMT10x_S_F4 201.3 181.48 29267000 47031000 33376 42697000 58790000 71324000 38673000 78886000 75751000 64550000 56143000 27250000 43869000 2725900 44292000 55858000 71064000 41427000 79395000 74745000 63634000 54767000 9 9 3 9 9 9 9 9 9 9 9 13939000 21199000 15131 19230000 43367000 51728000 24745000 37520000 36515000 31075000 26025000 12978000 19774000 1496100 20243000 41109000 50373000 26438000 38672000 36260000 30615000 25430000 4 4 2 4 4 4 4 4 4 4 4 15328000 25832000 18245 23467000 15424000 19596000 13928000 41367000 39236000 33475000 30118000 14271000 24095000 1229900 24049000 14749000 20691000 14989000 40724000 38485000 33019000 29336000 5 5 1 5 5 5 5 5 5 5 5 3413800000 1771300000 1642500000 15329 647 14056 79569;79570;79571;79572;79573;79574;79575 96144;96145;96146;96147;96148;96149;96150;96151;96152 96149 9 QIIPPGFCTNTNDFLSLLEK Unmodified 2306.1617 0.16166896 142 O14929;O14929-2 HAT1 Histone acetyltransferase type B catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 81.06 81.049 3 1.2848E-06 28182 20211116_3429_TMUAki_TMT10x_P_F2 84.499 68.907 3026300 4876000 0 5047300 2830800 3733700 3356400 1782500 2249500 2720500 3522600 2817700 4550500 241760 5117300 2727100 3840800 3342700 1938800 2382100 2618300 3358700 2 2 0 2 2 2 2 2 2 2 2 1509700 2584500 0 2559000 1222700 2290400 1491400 984170 1214100 1335400 1844900 1405600 2411500 115060 2608400 1178700 2320500 1490200 1077100 1269600 1289700 1760200 1 1 0 1 1 1 1 1 1 1 1 1516600 2291500 0 2488300 1608100 1443300 1864900 798300 1035400 1385100 1677700 1412100 2139000 126700 2508900 1548400 1520300 1852600 861770 1112400 1328600 1598600 1 1 0 1 1 1 1 1 1 1 1 1522200000 773860000 748330000 15330 142 14057 79576;79577;79578 96153;96154;96155 96154 3 QIISTIR Unmodified 829.50215 0.50215205 964 P37268;P37268-5;P37268-4;P37268-3;P37268-2 FDFT1 Squalene synthase yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 37.295 37.659 2 0.010012 9072 20211116_3436_TMUAki_TMT10x_P_F8 98.629 29.843 784390 1222900 14730 1151100 1034000 1031000 749930 950210 951640 866470 977340 730450 1140800 81354 1177600 985160 1055900 781780 967680 960210 849690 942010 2 2 1 2 2 2 2 2 2 2 2 474660 692200 14730 643850 685760 695390 426060 533340 526250 494710 560610 442070 645710 56038 661020 651900 701590 448850 549280 532200 484750 539740 1 1 1 1 1 1 1 1 1 1 1 309730 530710 0 507250 348260 335650 323870 416870 425390 371760 416730 288380 495130 25317 516570 333260 354350 332930 418400 428010 364940 402270 1 1 0 1 1 1 1 1 1 1 1 24754000 11436000 13318000 15331 964 14058 79579;79580;79581 96156;96157;96158 96157 3 QIIVDPLSFSEER Unmodified 1531.7882 0.7882229 922 P35221;P35221-2 CTNNA1 Catenin alpha-1 yes no 0 0 0 0 By MS/MS 4 0.816 1 1 1 3 72.116 71.945 2 2.4022E-08 23866 20211116_3442_TMUAki_TMT10x_S_F4 119.43 80.407 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15332 922 14059 79582;79583;79584 96159;96160;96161 96160 3 QIIVEEAK Unmodified 928.52295 0.52294707 3229 Q9Y281;Q9Y281-3 CFL2 Cofilin-2 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 42.71 42.841 2 0.0014247 11906 20211116_3442_TMUAki_TMT10x_S_F4 122.13 61.162 2009800 3377400 18743 3607600 2713800 2508800 2115000 2106200 2363700 1829000 2647300 1871500 3152300 193950 3647700 2588200 2614500 2184300 2153400 2403800 1797700 2545000 2 2 2 2 2 2 2 2 2 2 2 547070 798950 5585.3 872140 927660 1020600 668370 557690 588040 493280 657020 509410 745780 55891 886780 883300 1020100 689030 588450 604190 484420 631670 1 1 1 1 1 1 1 1 1 1 1 1462700 2578400 13157 2735500 1786100 1488200 1446600 1548500 1775600 1335700 1990300 1362000 2406500 138060 2760900 1704900 1594400 1495300 1565000 1799600 1313300 1913400 1 1 1 1 1 1 1 1 1 1 1 86685000 22165000 64520000 15333 3229 14060 79585;79586 96162;96163 96163 2 QIIVTRK Unmodified 856.54944 0.54943659 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 1 By MS/MS 2 0 1 1 32.836 32.613 3 0.048941 8535 20211116_3429_TMUAki_TMT10x_P_F2 53.891 6.4471 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15334 1997 14061 79587 96164 96164 1 QILAPVEESACQFFFDLNEK Unmodified 2384.1358 0.13584814 1966 Q69YN2;Q69YN2-3 CWF19L1 CWF19-like protein 1 yes no 0 0 0 0 By MS/MS 4 0 1 1 81.637 81.645 3 5.449E-05 27355 20211116_3431_TMUAki_TMT10x_P_F4 72.644 57.223 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15335 1966 14062 79588 96165 96165 1 QILGVIDKK Unmodified 1012.6281 0.62808085 1709 Q14444;Q14444-2 CAPRIN1 Caprin-1 yes no 0 0 0 1 By MS/MS 8 0 1 1 51.585 51.486 3 0.0023238 14231 20211116_3447_TMUAki_TMT10x_S_F8 70.942 42.929 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15336 1709 14063 79589 96166 96166 1 QILLGPNTGLSGGMPGALPSLPGKI Unmodified 2387.3247 0.32465196 2940 Q9NS69 TOMM22 Mitochondrial import receptor subunit TOM22 homolog yes yes 0 0 0 1 By MS/MS By MS/MS 5 0 3 2 1 79.201 79.215 3;4 2.6191E-11 25493 20211116_3444_TMUAki_TMT10x_S_F5 102.21 84.296 6868700 11360000 87693 11228000 7232200 9853200 8018400 5361300 4981200 5698600 7792200 6396000 10599000 643740 11443000 6958800 10022000 7998300 5687800 5300200 5551600 7429800 3 3 2 3 3 3 3 3 3 3 3 4826400 8201800 87693 8021000 4896300 8060700 5728800 3910500 3546700 4014300 5640000 4494500 7652500 482850 8196100 4721000 8116000 5699900 4188500 3777900 3916300 5375900 2 2 2 2 2 2 2 2 2 2 2 2042300 3157900 0 3207300 2335900 1792500 2289600 1450800 1434500 1684300 2152200 1901500 2946900 160900 3247300 2237800 1905700 2298400 1499400 1522300 1635400 2054000 1 1 0 1 1 1 1 1 1 1 1 1962700000 1297300000 665480000 15337 2940 14064 79590;79591;79592 96167;96168;96169 96169 3 QILLGPNTGLSGGMPGALPSLPGKI Oxidation (M) 2403.3196 0.31956659 2940 Q9NS69 TOMM22 Mitochondrial import receptor subunit TOM22 homolog yes yes 0 0 1 1 By MS/MS 3.67 0.471 1 2 3 78.21 78.162 3;4 1.0298E-07 26370 20211116_3442_TMUAki_TMT10x_S_F4 85.387 67.898 7073900 11611000 116220 9991000 10670000 8987700 10158000 7940300 7876500 8316500 9195200 6587400 10828000 745160 10292000 10225000 9194400 10260000 8137200 8159600 8106800 8829400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7073900 11611000 116220 9991000 10670000 8987700 10158000 7940300 7876500 8316500 9195200 6587400 10828000 745160 10292000 10225000 9194400 10260000 8137200 8159600 8106800 8829400 2 2 2 2 2 2 2 2 2 2 2 2484300000 0 2484300000 15338 2940 14064 79593;79594;79595 96170;96171 96171 3032 2 QILLYSATFPLSVQK Unmodified 1706.9607 0.96070795 810 P26196 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 78.53 78.529 3 2.8007E-10 26354 20211116_3433_TMUAki_TMT10x_P_F5 137.46 112.6 12799000 21609000 371930 21291000 15405000 23417000 16428000 15856000 13955000 15093000 17110000 11919000 20162000 1386400 21774000 14815000 23555000 16534000 16480000 14417000 14772000 16408000 3 3 2 3 3 3 3 3 3 3 3 9385800 15884000 371930 15407000 10771000 19267000 12477000 11738000 10842000 11292000 12632000 8741900 14819000 1144200 15809000 10393000 19220000 12516000 12301000 11165000 11046000 12130000 2 2 2 2 2 2 2 2 2 2 2 3413000 5725100 0 5884400 4634200 4150800 3951200 4118600 3113800 3801600 4478200 3177300 5342700 242220 5965900 4422500 4334800 4017700 4179700 3252800 3725900 4277700 1 1 0 1 1 1 1 1 1 1 1 1242200000 823370000 418840000 15339 810 14065 79596;79597;79598;79599 96172;96173;96174;96175;96176 96172 5 QILVGDIGDTVEDPYTSFVK Unmodified 2195.0998 0.099780209 3229 Q9Y281;Q9Y281-3 CFL2 Cofilin-2 yes no 0 0 0 0 By MS/MS By MS/MS 4.4 1.5 2 1 1 1 1 4 78.645 78.609 3 9.544E-05 27692 20211116_3430_TMUAki_TMT10x_P_F3 66.636 51.708 9586700 15017000 0 14243000 11630000 12844000 13505000 9402800 9184600 10202000 12147000 8925100 14010000 693080 14564000 11190000 13094000 13466000 9757700 9637900 9931200 11626000 2 2 0 2 2 2 2 2 2 2 2 4191600 5276800 0 5122700 3615900 6373100 4537500 3178500 3772300 3814800 4569500 3902700 4923200 335550 5255600 3490000 6343600 4530700 3411900 3899400 3699500 4383400 1 1 0 1 1 1 1 1 1 1 1 5395100 9740600 0 9119900 8014100 6471200 8967100 6224300 5412300 6387600 7577300 5022400 9086700 357530 9308100 7700000 6750200 8935800 6345800 5738500 6231700 7242600 1 1 0 1 1 1 1 1 1 1 1 2023400000 275270000 1748100000 15340 3229 14066 79600;79601;79602;79603;79604 96177;96178;96179 96177 3 QINIHNLSAFYDSELFR Unmodified 2066.0221 0.022139011 1114 P49736 MCM2 DNA replication licensing factor MCM2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.75 2.82 2 1 2 3 5 3 76.181 76.187 2;3 3.7365E-39 24877 20211116_3436_TMUAki_TMT10x_P_F8 190.85 173.04 22204000 38655000 505650 35615000 24945000 34887000 28231000 23178000 23047000 24859000 27687000 20678000 36057000 2350500 36537000 24032000 35323000 28303000 24207000 23838000 24210000 26565000 9 9 9 9 9 9 9 9 9 9 9 10734000 17227000 396430 16675000 9634100 20039000 12461000 10141000 9627300 10866000 12249000 9997800 16073000 1244000 17100000 9332700 19984000 12404000 10832000 10011000 10582000 11735000 4 4 4 4 4 4 4 4 4 4 4 11469000 21428000 109220 18940000 15311000 14849000 15769000 13037000 13420000 13993000 15438000 10680000 19985000 1106500 19437000 14699000 15339000 15899000 13375000 13827000 13627000 14830000 5 5 5 5 5 5 5 5 5 5 5 10212000000 6020700000 4191400000 15341 1114 14067 79605;79606;79607;79608;79609;79610;79611;79612 96180;96181;96182;96183;96184;96185;96186;96187;96188;96189 96184 10 QINTLSHGEVVCAVTISNPTR Unmodified 2295.1641 0.16412858 1512 Q04726;Q04726-3;Q04726-2;Q04726-7;Q04726-6;Q04726-5;Q04726-4 TLE3 Transducin-like enhancer protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 49.311 49.47 3 4.5597E-56 15627 20211116_3446_TMUAki_TMT10x_S_F7 235.5 224.08 1849800 3069000 37258 3199400 2065500 2296900 1673600 2250900 2071600 1848500 2344700 1722700 2864200 191110 3241200 1972900 2394600 1730400 2278800 2099800 1821900 2253400 3 3 3 3 3 3 3 3 3 3 3 590500 970960 19698 994520 812670 1289300 663840 705470 698710 582380 780890 549960 906100 70426 1017300 776670 1282100 682220 743060 712210 573850 750760 1 1 1 1 1 1 1 1 1 1 1 1259300 2098000 17560 2204800 1252900 1007600 1009700 1545400 1372900 1266200 1563900 1172700 1958100 120680 2223900 1196300 1112400 1048200 1535700 1387500 1248100 1502700 2 2 2 2 2 2 2 2 2 2 2 972250000 239680000 732580000 15342 1512 14068 79613;79614;79615;79616 96190;96191;96192;96193 96192 4 QINWTVLYR Unmodified 1191.64 0.64004252 1448 P83731 RPL24 60S ribosomal protein L24 yes yes 0 0 0 0 By MS/MS By MS/MS 3.25 0.829 1 1 2 3 1 65.478 65.312 2 6.3188E-06 21896 20211116_3429_TMUAki_TMT10x_P_F2 171.99 120.93 25764000 43802000 83950 43817000 32152000 34848000 30630000 19106000 16508000 20335000 28598000 23989000 40872000 2219400 44565000 30790000 35700000 30712000 20257000 17841000 19809000 27214000 5 5 2 5 5 5 5 5 5 5 5 15157000 24357000 34419 25271000 19271000 25942000 19812000 10890000 9653900 11898000 15972000 14112000 22731000 1285100 25726000 18489000 26048000 19753000 11862000 10490000 11578000 15212000 3 3 1 3 3 3 3 3 3 3 3 10607000 19445000 49531 18545000 12881000 8906300 10818000 8216000 6853800 8437000 12627000 9876500 18141000 934320 18839000 12301000 9652100 10958000 8394900 7350900 8230900 12002000 2 2 1 2 2 2 2 2 2 2 2 2446100000 1969900000 476140000 15343 1448 14069 79617;79618;79619;79620 96194;96195;96196;96197;96198 96194 5 QIPFHDVR Unmodified 1010.5298 0.52976379 1532 Q06787-8;Q06787-6;Q06787-5;Q06787;Q06787-7;Q06787-2;Q06787-4;Q06787-9;Q06787-3;Q06787-11;Q06787-10 FMR1 Fragile X mental retardation protein 1 yes no 0 0 0 0 By matching By MS/MS 5 0 2 1 1 34.549 34.613 3 0.010549 7264 20211116_3444_TMUAki_TMT10x_S_F5 63.816 48.668 307040 541100 0 553150 364240 213140 272280 242260 229660 248280 430500 285850 504940 22066 558370 346670 238760 279680 245020 242630 242230 409070 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 307040 541100 0 553150 364240 213140 272280 242260 229660 248280 430500 285850 504940 22066 558370 346670 238760 279680 245020 242630 242230 409070 1 1 0 1 1 1 1 1 1 1 1 51101000 33963000 17138000 15344 1532 14070 79621;79622 96199 96199 1 QIPVLQTNNGPSLTGLTTIAAHLVK Unmodified 2585.4541 0.45408623 209 O43324;O43324-2 EEF1E1 Eukaryotic translation elongation factor 1 epsilon-1 yes no 0 0 0 0 By MS/MS 5 0 2 2 78.877 78.888 3;4 1.182E-11 25370 20211116_3444_TMUAki_TMT10x_S_F5 110.9 97.477 17438000 29327000 754150 27776000 20134000 23272000 26891000 18174000 20566000 23411000 24364000 16241000 27360000 2099400 28379000 19516000 23871000 26727000 18892000 21334000 22648000 23386000 4 4 3 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17438000 29327000 754150 27776000 20134000 23272000 26891000 18174000 20566000 23411000 24364000 16241000 27360000 2099400 28379000 19516000 23871000 26727000 18892000 21334000 22648000 23386000 4 4 3 4 4 4 4 4 4 4 4 1197000000 0 1197000000 15345 209 14071 79623;79624 96200;96201;96202;96203 96202 4 QIQDQLNELEERAEALDR Unmodified 2169.0662 0.06618867 2339 Q92541 RTF1 RNA polymerase-associated protein RTF1 homolog yes yes 0 0 0 1 By MS/MS 1 0 1 1 73.587 73.478 3 5.2986E-05 25580 20211116_3439_TMUAki_TMT10x_S_F1 81.316 63.16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15346 2339 14072 79625 96204 96204 1 QIQELVEAIVLPMNHK Oxidation (M) 1877.0081 0.0080688509 711 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 1 0 By MS/MS 7 0 1 1 78.16 78.209 3 0.00099874 27069 20211116_3435_TMUAki_TMT10x_P_F7 66.673 48.077 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15347 711 14073 79626 96205 96205 803 1 QIQELVEAIVLPMNHK Unmodified 1861.0132 0.013154229 711 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 0 0 By MS/MS 8 0 1 1 79.415 79.42 3 1.2081E-05 26125 20211116_3436_TMUAki_TMT10x_P_F8 96.163 76.057 2481800 3711900 44969 3558100 2146200 3933900 2794900 2376400 2026300 2389200 2918000 2311100 3463000 242970 3646300 2076900 3949400 2777300 2495100 2126700 2332900 2787300 1 1 1 1 1 1 1 1 1 1 1 2481800 3711900 44969 3558100 2146200 3933900 2794900 2376400 2026300 2389200 2918000 2311100 3463000 242970 3646300 2076900 3949400 2777300 2495100 2126700 2332900 2787300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 271410000 271410000 0 15348 711 14073 79627 96206 96206 1 QISDGEREELNLTANR Unmodified 1843.9024 0.90241781 446 O95816;O95816-2 BAG2 BAG family molecular chaperone regulator 2 yes no 0 0 0 1 By MS/MS 2 0.816 1 1 1 3 39.524 39.411 3 2.7825E-69 12811 20211116_3441_TMUAki_TMT10x_S_F3 300.32 266.63 1009900 1731200 2509.3 2203300 924170 846940 855390 1555500 1678400 1307300 1645700 940320 1617100 81905 2194100 884370 962390 896730 1538400 1670300 1287000 1588600 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1009900 1731200 2509.3 2203300 924170 846940 855390 1555500 1678400 1307300 1645700 940320 1617100 81905 2194100 884370 962390 896730 1538400 1670300 1287000 1588600 4 4 2 4 4 4 4 4 4 4 4 142990000 0 142990000 15349 446 14074 79628;79629;79630 96207;96208;96209;96210 96209 4 QISQAYEVLSDAK Unmodified 1450.7304 0.73037367 889 P31689;P31689-2 DNAJA1 DnaJ homolog subfamily A member 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.56 0.685 5 3 1 4 5 61.902 62.019 2;3 1.1391E-74 19523 20211116_3433_TMUAki_TMT10x_P_F5 311.71 244.38 23174000 39613000 191250 42082000 22737000 22223000 18996000 25126000 24645000 23081000 27695000 21578000 36972000 1975300 42460000 21711000 23929000 19639000 25339000 24933000 22626000 26622000 5 5 2 5 5 5 5 5 5 5 5 3860700 6293100 0 7025700 5402200 6912600 4009200 3639600 4013300 3279900 3863300 3594400 5874800 299000 7113900 5142000 6975600 4139700 3854900 4077400 3218100 3731500 1 1 0 1 1 1 1 1 1 1 1 19313000 33320000 191250 35057000 17335000 15310000 14987000 21486000 20632000 19801000 23832000 17983000 31097000 1676300 35346000 16569000 16954000 15499000 21484000 20856000 19408000 22890000 4 4 2 4 4 4 4 4 4 4 4 2948700000 572570000 2376200000 15350 889 14075 79631;79632;79633;79634;79635;79636;79637;79638;79639 96211;96212;96213;96214;96215;96216;96217;96218;96219 96212 9 QISRPSAAGINLMIGSTR Oxidation (M) 1886.9996 0.99962943 1546 Q08211;Q08211-2 DHX9 ATP-dependent RNA helicase A yes no 0 0 1 1 By MS/MS By MS/MS 5.45 1.78 2 2 2 1 2 2 5 6 45.136 45.281 3 1.0189E-05 11603 20211116_3444_TMUAki_TMT10x_S_F5 87.125 76.786 26324000 47029000 154720 46058000 36542000 42729000 29551000 40541000 40929000 36245000 37510000 24511000 43879000 2351500 47005000 34864000 43685000 30693000 41201000 41019000 35576000 36290000 15 15 11 15 15 15 15 15 15 15 15 11651000 20744000 62616 19657000 21310000 28061000 15738000 16919000 17443000 15848000 15859000 10848000 19352000 1068300 20256000 20291000 27818000 16308000 17732000 17615000 15522000 15348000 6 6 4 6 6 6 6 6 6 6 6 14673000 26285000 92101 26401000 15232000 14667000 13813000 23622000 23485000 20397000 21651000 13662000 24527000 1283200 26750000 14573000 15867000 14385000 23469000 23404000 20053000 20942000 9 9 7 9 9 9 9 9 9 9 9 6218600000 3415300000 2803300000 15351 1546 14076 79640;79641;79642;79643;79644;79645;79646;79647;79648;79649;79650 96220;96221;96222;96223;96224;96225;96226;96227;96228;96229;96230;96231;96232;96233;96234 96230 2083 15 QISRPSAAGINLMIGSTR Unmodified 1871.0047 0.0047148075 1546 Q08211;Q08211-2 DHX9 ATP-dependent RNA helicase A yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 50.93 51.093 3 8.2227E-41 13978 20211116_3444_TMUAki_TMT10x_S_F5 211.11 182.16 22890000 35965000 68601 41044000 30742000 31492000 24104000 27208000 24603000 23926000 30606000 21312000 33578000 1911100 41371000 29304000 32575000 24813000 27781000 25220000 23503000 29338000 6 6 2 6 6 6 6 6 6 6 6 10564000 16340000 68601 19125000 19185000 22254000 14746000 12652000 12085000 11339000 13933000 9836600 15258000 1059600 19361000 18288000 22262000 15108000 13309000 12477000 11128000 13384000 3 3 2 3 3 3 3 3 3 3 3 12326000 19625000 0 21919000 11557000 9238100 9357800 14556000 12517000 12587000 16672000 11475000 18320000 851450 22010000 11016000 10313000 9704900 14472000 12743000 12374000 15955000 3 3 0 3 3 3 3 3 3 3 3 1578900000 985640000 593240000 15352 1546 14076 79651;79652;79653;79654 96235;96236;96237;96238;96239;96240 96239 6 QISVGFIGYPNVGK Unmodified 1477.7929 0.79291434 1664 Q13823 GNL2 Nucleolar GTP-binding protein 2 yes yes 0 0 0 0 By MS/MS 3 0 1 1 69.67 69.228 3 0.0009084 25010 20211116_3441_TMUAki_TMT10x_S_F3 72.209 49.676 8429600 14990000 0 13347000 8867900 9218900 8249200 9409600 9417800 9459900 11515000 7848500 13981000 666570 13671000 8484900 9650600 8436100 9558900 9604200 9236900 11043000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8429600 14990000 0 13347000 8867900 9218900 8249200 9409600 9417800 9459900 11515000 7848500 13981000 666570 13671000 8484900 9650600 8436100 9558900 9604200 9236900 11043000 2 2 0 2 2 2 2 2 2 2 2 256330000 0 256330000 15353 1664 14077 79655 96241;96242 96241 2 QITIIDSPSFIVSPLNSSSALALR Unmodified 2528.385 0.38500361 2698 Q9BVP2;Q9BVP2-2 GNL3 Guanine nucleotide-binding protein-like 3 yes no 0 0 0 0 By MS/MS 3 0 1 1 79.862 79.789 3 1.0859E-05 28167 20211116_3430_TMUAki_TMT10x_P_F3 77.693 59.377 1717700 2574600 15414 2651800 1692600 3404900 2089500 1778600 1457200 1889100 2093500 1599500 2402600 156420 2711100 1633800 3385700 2079100 1893800 1532700 1840400 1999800 1 1 1 1 1 1 1 1 1 1 1 1717700 2574600 15414 2651800 1692600 3404900 2089500 1778600 1457200 1889100 2093500 1599500 2402600 156420 2711100 1633800 3385700 2079100 1893800 1532700 1840400 1999800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 891570000 891570000 0 15354 2698 14078 79656 96243 96243 1 QITQSALLAEAR Unmodified 1299.7147 0.71466402 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 5 0.577 1 4 1 3 3 48.332 48.496 2;3 5.0574E-13 13771 20211116_3431_TMUAki_TMT10x_P_F4 179.35 141.8 9105900 15405000 63609 17653000 17148000 19078000 11493000 16352000 16041000 13834000 14766000 8479000 14383000 926870 17871000 16304000 19286000 12095000 16688000 16075000 13615000 14284000 6 6 6 6 6 6 6 6 6 6 6 5231000 8791200 26897 10281000 13349000 15691000 8508700 9829800 9632600 8144100 8530700 4870800 8208700 572460 10464000 12680000 15520000 8918600 10240000 9711200 8023400 8263300 3 3 3 3 3 3 3 3 3 3 3 3874900 6613800 36713 7371400 3799100 3386700 2984800 6522700 6408300 5690200 6235600 3608200 6174200 354410 7406900 3624500 3766400 3176100 6448700 6363400 5591700 6020600 3 3 3 3 3 3 3 3 3 3 3 890390000 485740000 404650000 15355 1433 14079 79657;79658;79659;79660;79661;79662 96244;96245;96246;96247;96248;96249;96250 96245 7 QITQVYGFYDECLRK Unmodified 1918.9247 0.92473315 1363;1273 P67775;P62714;P67775-2;P60510 PPP2CA;PPP2CB;PPP4C Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform;Serine/threonine-protein phosphatase 4 catalytic subunit no no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 60.237 60.541 3 1.4865E-33 17855 20211116_3447_TMUAki_TMT10x_S_F8 226.65 209.77 16787000 28436000 65777 30584000 23512000 30160000 20984000 17075000 16858000 17055000 20500000 15631000 26541000 1533800 31043000 22484000 30457000 21290000 18021000 17460000 16658000 19663000 3 3 1 3 3 3 3 3 3 3 3 12625000 21265000 65777 22693000 19005000 26440000 16939000 13523000 13293000 13063000 15554000 11756000 19848000 1196100 23105000 18175000 26414000 17177000 14387000 13763000 12777000 14935000 2 2 1 2 2 2 2 2 2 2 2 4162300 7170800 0 7891800 4506900 3720700 4044900 3552300 3564900 3991500 4945700 3875400 6693800 337780 7937600 4309000 4043900 4112200 3633400 3696600 3880200 4728100 1 1 0 1 1 1 1 1 1 1 1 2836100000 1822100000 1014000000 15356 1363;1273 14080 79663;79664;79665 96251;96252;96253 96253 3 QITSYGETCPGLEQYAIK Unmodified 2056.9776 0.97755658 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 63.06 63.113 3 6.1482E-13 19215 20211116_3445_TMUAki_TMT10x_S_F6 139.08 127.64 13250000 23048000 389210 24997000 15574000 19816000 14472000 14279000 14221000 14448000 16047000 12340000 21513000 1459300 25286000 14926000 20382000 14729000 14802000 14543000 14104000 15423000 6 6 5 6 6 6 6 6 6 6 6 7368000 12131000 225490 12654000 9198200 14754000 8889100 8099700 8345500 8353500 8521100 6861700 11322000 812120 12903000 8823300 14751000 9016000 8578700 8520100 8148000 8214500 4 4 3 4 4 4 4 4 4 4 4 5882400 10916000 163720 12344000 6375600 5061400 5582500 6178900 5875600 6094900 7525600 5478300 10192000 647180 12383000 6103200 5630600 5713100 6223400 6023100 5956100 7208600 2 2 2 2 2 2 2 2 2 2 2 3568300000 1661300000 1906900000 15357 1146 14081 79666;79667;79668;79669 96254;96255;96256;96257;96258;96259 96259 6 QITSYGETCPGLEQYAIKK Unmodified 2185.0725 0.072519601 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 1 By MS/MS By MS/MS 7.4 0.49 3 2 2 3 56.997 57.438 3;4 1.8769E-17 18816 20211116_3446_TMUAki_TMT10x_S_F7 145.62 129.86 51874000 86126000 476430 90953000 68039000 68934000 48777000 80010000 78790000 75596000 71978000 48298000 80383000 4392400 92117000 64746000 71832000 51413000 80657000 78600000 74013000 69645000 7 7 3 7 7 7 7 7 7 7 7 12699000 20856000 297570 22784000 24037000 34980000 21188000 21818000 21894000 19089000 17820000 11826000 19468000 1428600 23289000 22990000 34587000 21663000 22766000 22098000 18755000 17317000 3 3 1 3 3 3 3 3 3 3 3 39174000 65270000 178860 68170000 44003000 33954000 27589000 58192000 56896000 56507000 54158000 36472000 60915000 2963700 68828000 41756000 37245000 29750000 57892000 56502000 55257000 52329000 4 4 2 4 4 4 4 4 4 4 4 4248000000 1484300000 2763700000 15358 1146 14082 79670;79671;79672;79673;79674 96260;96261;96262;96263;96264;96265;96266;96267 96264 8 QITVNDLPVGR Unmodified 1210.667 0.66698555 1533;899 Q06830;P32119 PRDX1;PRDX2 Peroxiredoxin-1;Peroxiredoxin-2 no no 0 0 0 0 By MS/MS By MS/MS 5 1.25 2 3 4 3 2 8 6 50.672 50.836 2;3 1.1001E-30 14912 20211116_3433_TMUAki_TMT10x_P_F5 275.63 236.61 104580000 162660000 883770 213610000 184810000 172440000 111050000 155300000 165600000 133260000 154990000 97376000 151970000 9672700 213710000 175340000 177820000 118190000 158100000 165710000 131060000 149850000 18 18 10 18 18 18 18 18 18 18 18 52417000 78126000 195630 102630000 141440000 133070000 75566000 76401000 80961000 66681000 75622000 48801000 72992000 5002000 103430000 133920000 132410000 80261000 80248000 81938000 65525000 73115000 8 8 3 8 8 8 8 8 8 8 8 52165000 84534000 688140 110980000 43369000 39367000 35482000 78896000 84643000 66580000 79372000 48575000 78978000 4670600 110280000 41417000 45410000 37925000 77853000 83771000 65533000 76730000 10 10 7 10 10 10 10 10 10 10 10 38056000000 22338000000 15718000000 15359 1533;899 14083 79675;79676;79677;79678;79679;79680;79681;79682;79683;79684;79685;79686;79687;79688 96268;96269;96270;96271;96272;96273;96274;96275;96276;96277;96278;96279;96280;96281;96282;96283;96284;96285;96286;96287 96272 20 QIVEILTAYASAVGIGTTQVQPE Unmodified 2387.2584 0.25840612 1872 Q16891;Q16891-2;Q16891-4;Q16891-3 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 By MS/MS 2 0 1 1 85.475 85.475 3 0.10259 30012 20211116_3429_TMUAki_TMT10x_P_F2 24.303 9.2128 149190 249880 0 229930 138530 284990 163510 154890 180870 185430 177060 138890 233090 9136.5 236800 133250 284010 165080 164960 183110 179840 170920 1 1 0 1 1 1 1 1 1 1 1 149190 249880 0 229930 138530 284990 163510 154890 180870 185430 177060 138890 233090 9136.5 236800 133250 284010 165080 164960 183110 179840 170920 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17681000 17681000 0 15360 1872 14084 79689 96288 96288 1 QIWTLEQPPDEAGSAAVCLR Unmodified 2240.0896 0.089566649 1859 Q16658 FSCN1 Fascin yes yes 0 0 0 0 By MS/MS By MS/MS 4.56 0.831 1 3 4 1 5 4 69.848 69.805 2;3 7.3176E-69 22758 20211116_3433_TMUAki_TMT10x_P_F5 250.52 227.43 55972000 80540000 1653600 100200000 60055000 62376000 60648000 33025000 33539000 39950000 62397000 52125000 75226000 5856400 100270000 57674000 65218000 60647000 35266000 36330000 38732000 59299000 13 13 8 13 13 13 13 13 13 13 13 35212000 47314000 1038900 61166000 34111000 45647000 36796000 21752000 21589000 25330000 37555000 32792000 44200000 3643400 61189000 32823000 46922000 36712000 23429000 23195000 24591000 35733000 8 8 5 8 8 8 8 8 8 8 8 20760000 33226000 614710 39033000 25944000 16729000 23852000 11272000 11950000 14620000 24842000 19333000 31025000 2213000 39077000 24851000 18296000 23935000 11837000 13135000 14141000 23565000 5 5 3 5 5 5 5 5 5 5 5 6792500000 3175600000 3616900000 15361 1859 14085 79690;79691;79692;79693;79694;79695;79696;79697;79698 96289;96290;96291;96292;96293;96294;96295;96296;96297;96298;96299;96300;96301;96302;96303 96297 15 QIYPPINVLPSLSR Unmodified 1595.9035 0.90352742 753 P21281;P15313 ATP6V1B2;ATP6V1B1 V-type proton ATPase subunit B, brain isoform;V-type proton ATPase subunit B, kidney isoform yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 75.669 75.507 2 1.2634E-18 27374 20211116_3441_TMUAki_TMT10x_S_F3 164.9 98.467 4733100 8491100 49360 7659600 5759100 7258800 5876500 5271900 5400100 5827600 6414700 4407300 7920000 452780 7866800 5528000 7374800 5939900 5477000 5550600 5668700 6156600 3 3 3 3 3 3 3 3 3 3 3 1831200 3095000 170.55 2612700 1633100 3459800 2074800 1847300 1963700 2183800 2174500 1705000 2886100 149200 2712100 1577000 3436200 2078100 1969700 2010000 2118900 2091200 1 1 1 1 1 1 1 1 1 1 1 2901900 5396100 49190 5046900 4126000 3798900 3801600 3424600 3436500 3643900 4240200 2702400 5033800 303580 5154700 3951000 3938700 3861800 3507400 3540500 3549800 4065500 2 2 2 2 2 2 2 2 2 2 2 364810000 135480000 229330000 15362 753 14086 79699;79700 96304;96305;96306 96305 3 QIYYSDKYDDEEFEYR Unmodified 2161.9116 0.91164509 1289 P61024 CKS1B Cyclin-dependent kinases regulatory subunit 1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.78 1.31 2 2 2 2 1 4 5 54.608 54.503 3 1.1726E-35 17933 20211116_3439_TMUAki_TMT10x_S_F1 209.73 188.68 69340000 118840000 258040 118240000 72869000 84717000 66717000 63619000 68124000 62315000 78530000 64558000 110890000 5297100 120160000 69683000 87898000 68039000 65709000 69613000 60914000 75433000 15 15 5 15 15 15 15 15 15 15 15 21269000 36295000 70327 35967000 24115000 39787000 23344000 19051000 20774000 18766000 22988000 19804000 33866000 1838600 36772000 23106000 39831000 23640000 20408000 21325000 18340000 22107000 5 5 2 5 5 5 5 5 5 5 5 48071000 82545000 187720 82270000 48754000 44930000 43373000 44568000 47351000 43548000 55542000 44754000 77022000 3458500 83390000 46577000 48067000 44399000 45301000 48288000 42574000 53326000 10 10 3 10 10 10 10 10 10 10 10 9644000000 4756900000 4887000000 15363 1289 14087 79701;79702;79703;79704;79705;79706;79707;79708;79709 96307;96308;96309;96310;96311;96312;96313;96314;96315;96316;96317;96318;96319;96320;96321 96312 15 QKADEEEMLDNLPEAGDSR Oxidation (M) 2161.9434 0.94335592 2890 Q9NPD8 UBE2T Ubiquitin-conjugating enzyme E2 T yes yes 0 0 1 1 By MS/MS 1 0 1 1 41.773 41.773 3 0.0103 10690 20211116_3428_TMUAki_TMT10x_P_F1 51.469 46.467 745200 1280500 50343 1752700 2750600 2075300 1074400 792320 1111000 667810 950890 694230 1196600 136790 1759500 2598300 2065500 1178600 866600 1122900 657350 922250 1 1 1 1 1 1 1 1 1 1 1 745200 1280500 50343 1752700 2750600 2075300 1074400 792320 1111000 667810 950890 694230 1196600 136790 1759500 2598300 2065500 1178600 866600 1122900 657350 922250 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72577000 72577000 0 15364 2890 14088 79710 96322 96322 3006 1 QKFDEIFSATR Unmodified 1340.6725 0.67246486 2370 Q92878;Q92878-2;Q92878-3 RAD50 DNA repair protein RAD50 yes no 0 0 0 1 By MS/MS 7 0 1 1 54.515 55.036 3 0.058408 17872 20211116_3446_TMUAki_TMT10x_S_F7 48.704 22.586 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15365 2370 14089 79711 96323 96323 1 QKGADFLVTEVENGGSLGSK Unmodified 2035.0222 0.02219859 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 1 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 63.6 63.614 3 9.8974E-13 19411 20211116_3445_TMUAki_TMT10x_S_F6 126.61 109.02 15174000 28023000 258540 17714000 19916000 36080000 19904000 39048000 36668000 35443000 26761000 14129000 26110000 1421500 19074000 19103000 35690000 20709000 39444000 36218000 34764000 26122000 5 5 3 5 5 5 5 5 5 5 5 5630900 8856500 58925 6573400 8032700 17883000 9036100 11995000 11754000 11066000 8214000 5242800 8255500 488450 7036300 7726500 17388000 9197400 12465000 11713000 10846000 8033400 2 2 1 2 2 2 2 2 2 2 2 9543000 19167000 199610 11141000 11883000 18197000 10868000 27054000 24914000 24377000 18547000 8886300 17855000 933050 12038000 11376000 18302000 11512000 26979000 24505000 23918000 18089000 3 3 2 3 3 3 3 3 3 3 3 2201500000 783710000 1417800000 15366 670;671 14090 79712;79713;79714 96324;96325;96326;96327;96328 96328 5 QKLPDGSEIPLPPILLGR Unmodified 1942.1251 0.12514752 2511 Q96KP4 CNDP2 Cytosolic non-specific dipeptidase yes yes 0 0 0 1 By MS/MS 1 0 1 1 77.431 77.431 3 8.1785E-05 25255 20211116_3428_TMUAki_TMT10x_P_F1 78.674 57.817 3041500 6006400 68159 5122200 3291600 6409400 4193500 3140000 3163400 3343100 4307900 2832400 5601300 319180 5307200 3183000 6376600 4174600 3363600 3303900 3256700 4120300 1 1 1 1 1 1 1 1 1 1 1 3041500 6006400 68159 5122200 3291600 6409400 4193500 3140000 3163400 3343100 4307900 2832400 5601300 319180 5307200 3183000 6376600 4174600 3363600 3303900 3256700 4120300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 614840000 614840000 0 15367 2511 14091 79715 96329 96329 1 QKLQYEGIFIK Unmodified 1365.7656 0.76563696 1810 Q15459;Q15459-2 SF3A1 Splicing factor 3A subunit 1 yes no 0 0 0 1 By MS/MS By MS/MS 2.8 2.64 2 2 1 3 2 57.499 57.398 3 9.5056E-07 17014 20211116_3428_TMUAki_TMT10x_P_F1 131.13 108.6 39606000 69255000 842020 59809000 71353000 105250000 60911000 71544000 72445000 63812000 61408000 36883000 64587000 4398200 62362000 68197000 103670000 62688000 74211000 72804000 62640000 59580000 7 7 6 7 7 7 7 7 7 7 7 35649000 62104000 808450 53348000 67155000 101140000 56649000 64166000 65431000 57576000 55325000 33197000 57917000 4035500 55757000 64169000 99254000 58283000 66908000 65822000 56503000 53683000 6 6 5 6 6 6 6 6 6 6 6 3957900 7151500 33569 6460600 4197300 4116700 4261600 7378000 7013000 6235500 6083200 3685400 6670500 362770 6604600 4028200 4411700 4404600 7302700 6981200 6137000 5897000 1 1 1 1 1 1 1 1 1 1 1 1932200000 1582700000 349420000 15368 1810 14092 79716;79717;79718;79719;79720 96330;96331;96332;96333;96334;96335;96336;96337 96332 8 QKPITPETAEK Unmodified 1240.6663 0.66631685 1281 P60953;P60953-1 CDC42 Cell division control protein 42 homolog yes no 0 0 0 1 By MS/MS 5 0 1 1 33.606 33.551 3 0.0012614 8164 20211116_3433_TMUAki_TMT10x_P_F5 79.089 61.921 712470 1109500 661.42 1123100 1475900 1209500 891340 624530 644380 622140 857420 663380 1035400 70378 1146000 1400500 1213700 927050 664430 673910 607710 820530 1 1 1 1 1 1 1 1 1 1 1 712470 1109500 661.42 1123100 1475900 1209500 891340 624530 644380 622140 857420 663380 1035400 70378 1146000 1400500 1213700 927050 664430 673910 607710 820530 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 102580000 102580000 0 15369 1281 14093 79721 96338 96338 1 QKPSNTEDFIEDIVK Unmodified 1761.8785 0.87849447 1041 P46063 RECQL ATP-dependent DNA helicase Q1 yes yes 0 0 0 1 By MS/MS By MS/MS 5 1.22 1 1 2 1 3 64.856 64.743 3 6.9029E-10 19850 20211116_3445_TMUAki_TMT10x_S_F6 134.85 108.05 21189000 36801000 16912 36820000 27080000 33699000 26177000 31255000 29139000 31424000 30472000 19728000 34340000 1730700 37514000 25936000 34468000 26691000 31906000 29562000 30684000 29354000 5 5 2 5 5 5 5 5 5 5 5 6793100 12356000 0 11451000 10304000 17607000 10459000 11109000 10103000 10602000 9922300 6324400 11526000 538440 11838000 9879400 17411000 10590000 11608000 10287000 10376000 9577300 2 2 0 2 2 2 2 2 2 2 2 14396000 24445000 16912 25368000 16776000 16092000 15718000 20146000 19036000 20822000 20549000 13404000 22814000 1192200 25676000 16057000 17057000 16102000 20298000 19275000 20308000 19776000 3 3 2 3 3 3 3 3 3 3 3 3056200000 532030000 2524200000 15370 1041 14094 79722;79723;79724;79725 96339;96340;96341;96342;96343 96343 5 QKQSLEYLEQVR Unmodified 1519.7995 0.79945628 2735 Q9BZE4;Q9BZE4-3;Q9BZE4-2 GTPBP4 Nucleolar GTP-binding protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 6 0 3 1 2 45.334 45.408 3 0.00032904 11615 20211116_3434_TMUAki_TMT10x_P_F6 82.578 58.196 1747700 3114000 26851 2981900 5388100 5598000 3182800 3150300 3091500 2765800 2971200 1627500 2905200 220910 3090500 5112600 5486500 3340900 3315100 3144800 2717100 2869900 1 1 1 1 1 1 1 1 1 1 1 1747700 3114000 26851 2981900 5388100 5598000 3182800 3150300 3091500 2765800 2971200 1627500 2905200 220910 3090500 5112600 5486500 3340900 3315100 3144800 2717100 2869900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 232510000 232510000 0 15371 2735 14095 79726;79727;79728 96344;96345;96346 96344 3 QKVDLQSLPTR Unmodified 1283.7197 0.7197494 2745 Q9C005 DPY30 Protein dpy-30 homolog yes yes 0 0 0 1 By MS/MS 7 0 1 1 38.965 39.403 3 0.0018243 11115 20211116_3435_TMUAki_TMT10x_P_F7 76.728 57.413 1329700 2047700 0 2255800 3992100 3083400 1842300 1687600 1838500 1376700 2036000 1237900 1911500 128370 2299000 3772500 3058700 1981100 1777000 1877500 1357400 1958000 2 2 0 2 2 2 2 2 2 2 2 1329700 2047700 0 2255800 3992100 3083400 1842300 1687600 1838500 1376700 2036000 1237900 1911500 128370 2299000 3772500 3058700 1981100 1777000 1877500 1357400 1958000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28515000 28515000 0 15372 2745 14096 79729 96347;96348 96348 2 QKVDSLLENLEK Unmodified 1414.7668 0.76675917 545 P07910-2;P07910-4;P07910;P07910-3;O60812;B7ZW38;B2RXH8;P0DMR1 HNRNPC;HNRNPCL1;HNRNPCL3;HNRNPCL2;HNRNPCL4 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2;Heterogeneous nuclear ribonucleoprotein C-like 4 yes no 0 0 0 1 By MS/MS By MS/MS 6 1.25 1 1 2 3 7 8 6 56.906 57.141 2;3;4 1.6461E-17 21348 20211116_3435_TMUAki_TMT10x_P_F7 223.31 159.27 212660000 334340000 3614700 431630000 325620000 376960000 233720000 255380000 283990000 253910000 279710000 198030000 312340000 22305000 432650000 310110000 384660000 243430000 265750000 286560000 248040000 269960000 20 20 15 20 20 20 20 20 20 20 20 141450000 214960000 2851000 278230000 280030000 319700000 182250000 173740000 184930000 165570000 181130000 131730000 200810000 16267000 279990000 266220000 319850000 190060000 183770000 187890000 162050000 174850000 13 13 11 13 13 13 13 13 13 13 13 71203000 119380000 763670 153400000 45589000 57266000 51471000 81643000 99052000 88331000 98584000 66301000 111520000 6038200 152650000 43893000 64816000 53374000 81979000 98670000 85993000 95115000 7 7 4 7 7 7 7 7 7 7 7 21163000000 11368000000 9794700000 15373 545 14097 79730;79731;79732;79733;79734;79735;79736;79737;79738;79739;79740;79741;79742;79743 96349;96350;96351;96352;96353;96354;96355;96356;96357;96358;96359;96360;96361;96362;96363;96364;96365;96366;96367;96368;96369 96361 21 QKVDSLLENLEKIEK Unmodified 1784.9884 0.98837927 545 P07910-2;P07910-4;P07910;P07910-3;O60812;B7ZW38;B2RXH8;P0DMR1 HNRNPC;HNRNPCL1;HNRNPCL3;HNRNPCL2;HNRNPCL4 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2;Heterogeneous nuclear ribonucleoprotein C-like 4 yes no 0 0 0 2 By MS/MS By MS/MS 5.86 2.17 1 1 1 3 1 6 1 71.949 72.082 3;4 2.9971E-33 23018 20211116_3428_TMUAki_TMT10x_P_F1 221.85 207.69 72260000 138190000 560680 74456000 135330000 255750000 136940000 177840000 168730000 166290000 132810000 67281000 128700000 6846400 83170000 129800000 247610000 139800000 184400000 168990000 162890000 129230000 13 13 7 13 13 13 13 13 13 13 13 65176000 124170000 560680 66840000 123760000 244400000 128090000 160320000 151880000 149510000 119240000 60685000 115650000 6198900 74892000 118780000 236130000 130440000 166920000 152310000 146460000 116040000 12 12 7 12 12 12 12 12 12 12 12 7083600 14020000 0 7616200 11566000 11351000 8849900 17518000 16851000 16783000 13575000 6595500 13059000 647570 8278000 11022000 11472000 9366500 17478000 16677000 16421000 13197000 1 1 0 1 1 1 1 1 1 1 1 9292500000 7160000000 2132500000 15374 545 14098 79744;79745;79746;79747;79748;79749;79750 96370;96371;96372;96373;96374;96375;96376;96377;96378;96379;96380;96381;96382 96371 13 QKVEGTEPTTAFNLFVGNLNFNK Unmodified 2567.302 0.30200227 729 P19338 NCL Nucleolin yes yes 0 0 0 1 By MS/MS By MS/MS 3.17 1.83 1 6 8 1 2 5 13 61.333 61.277 3;4 4.086E-28 28308 20211116_3441_TMUAki_TMT10x_S_F3 174.2 165.16 108230000 166330000 493180 166180000 114770000 154370000 130800000 85499000 93081000 106460000 119980000 100760000 155200000 7167100 169370000 110400000 156440000 130670000 91032000 97299000 103110000 114900000 34 34 21 34 34 34 34 34 34 34 34 60463000 92894000 338350 94017000 54835000 109720000 74225000 49567000 53053000 64449000 67496000 56292000 86685000 4371800 96068000 53029000 109460000 73620000 53878000 55411000 62331000 64663000 7 7 2 7 7 7 7 7 7 7 7 47763000 73437000 154830 72165000 59937000 44642000 56577000 35931000 40028000 42008000 52481000 44470000 68520000 2795300 73299000 57369000 46980000 57052000 37154000 41888000 40777000 50241000 27 27 19 27 27 27 27 27 27 27 27 40069000000 19673000000 20396000000 15375 729 14099 79751;79752;79753;79754;79755;79756;79757;79758;79759;79760;79761;79762;79763;79764;79765;79766;79767;79768 96383;96384;96385;96386;96387;96388;96389;96390;96391;96392;96393;96394;96395;96396;96397;96398;96399;96400;96401;96402;96403;96404;96405;96406;96407;96408;96409;96410;96411;96412;96413;96414;96415;96416 96409 34 QLADETLLK Unmodified 1029.5706 0.57062555 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 53.752 53.746 2 3.5706E-06 16397 20211116_3442_TMUAki_TMT10x_S_F4 163.16 83.686 6725700 10136000 396.37 12151000 17107000 14849000 8098100 8257300 9413200 7362900 9223700 6261900 9465900 661960 12294000 16173000 14813000 8726000 8701300 9512000 7227900 8903600 2 2 1 2 2 2 2 2 2 2 2 6725700 10136000 396.37 12151000 17107000 14849000 8098100 8257300 9413200 7362900 9223700 6261900 9465900 661960 12294000 16173000 14813000 8726000 8701300 9512000 7227900 8903600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 799810000 799810000 0 15376 748 14100 79769;79770;79771 96417;96418;96419 96419 3 QLADETLLKVDLENR Unmodified 1755.9367 0.93667805 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 63.52 63.499 3 0.012473 19901 20211116_3431_TMUAki_TMT10x_P_F4 56.906 37.83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15377 748 14101 79772;79773 96420;96421 96420 2 QLAEDFLK Unmodified 962.5073 0.50729701 710 P17844;P17844-2 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 60.323 60.393 2 0.0014247 19135 20211116_3442_TMUAki_TMT10x_S_F4 122.13 77.688 40895000 65371000 268480 77130000 61770000 67820000 42917000 48345000 50499000 44660000 54046000 38077000 61042000 3739700 77715000 58758000 69227000 44753000 50027000 51168000 43769000 52026000 5 5 4 5 5 5 5 5 5 5 5 24471000 37805000 137240 44991000 48248000 55112000 30545000 29784000 31451000 27180000 32331000 22785000 35303000 2296400 45542000 45813000 54951000 31937000 31482000 31987000 26652000 31162000 3 3 2 3 3 3 3 3 3 3 3 16423000 27566000 131240 32139000 13522000 12708000 12372000 18562000 19048000 17481000 21714000 15293000 25739000 1443300 32174000 12945000 14276000 12816000 18545000 19180000 17117000 20864000 2 2 2 2 2 2 2 2 2 2 2 2297100000 1299600000 997470000 15378 710 14102 79774;79775;79776;79777 96422;96423;96424;96425;96426 96425 5 QLAEDFLR Unmodified 990.51345 0.51344502 2368 Q92841;Q92841-3;Q92841-1;Q92841-2 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.745 1 2 3 3 3 55.798 55.653 2 0.0026397 17132 20211116_3442_TMUAki_TMT10x_S_F4 107.1 66.075 33118000 53396000 0 61350000 48547000 55037000 37540000 43291000 43685000 41347000 45235000 30833000 49854000 2546400 61931000 46245000 56194000 38844000 44550000 44228000 40461000 43589000 7 7 0 7 7 7 7 7 7 7 7 17853000 28501000 0 32827000 34955000 42318000 24741000 23800000 23831000 22188000 24901000 16620000 26611000 1444800 33325000 33242000 42109000 25602000 25085000 24322000 21737000 23988000 4 4 0 4 4 4 4 4 4 4 4 15265000 24895000 0 28523000 13592000 12720000 12799000 19491000 19854000 19158000 20334000 14212000 23243000 1101600 28605000 13003000 14085000 13243000 19465000 19907000 18725000 19601000 3 3 0 3 3 3 3 3 3 3 3 2522600000 1592100000 930550000 15379 2368 14103 79778;79779;79780;79781;79782;79783 96427;96428;96429;96430;96431;96432;96433;96434 96432 8 QLAEFAR Unmodified 833.43955 0.43955179 803 P25490;Q96MM3 YY1;ZFP42 Transcriptional repressor protein YY1;Zinc finger protein 42 homolog yes no 0 0 0 0 By MS/MS 4 0 1 1 38.372 38.53 2 0.051652 10201 20211116_3442_TMUAki_TMT10x_S_F4 68.214 27.642 421110 646160 3247.9 734190 399780 366990 432940 505470 531100 472980 551750 392120 603270 37641 737290 384360 399630 440460 505970 536740 463280 531610 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 421110 646160 3247.9 734190 399780 366990 432940 505470 531100 472980 551750 392120 603270 37641 737290 384360 399630 440460 505970 536740 463280 531610 1 1 1 1 1 1 1 1 1 1 1 8520600 0 8520600 15380 803 14104 79784 96435 96435 1 QLALETIDINKDPYFMK Oxidation (M) 2054.0394 0.039428559 1806 Q15428 SF3A2 Splicing factor 3A subunit 2 yes yes 0 0 1 1 By MS/MS By MS/MS 7 0 3 1 2 70.283 70.615 3;4 6.9155E-06 24333 20211116_3446_TMUAki_TMT10x_S_F7 98.507 90.286 26799000 47358000 250540 43423000 33081000 42437000 34183000 35912000 36919000 40179000 38638000 24953000 44175000 2400600 44561000 31753000 43146000 34700000 36970000 37500000 39065000 37220000 4 4 2 4 4 4 4 4 4 4 4 6236500 11313000 124610 10935000 8029900 16563000 8502600 8739600 9328900 10354000 8959200 5807700 10554000 658300 11266000 7718900 16350000 8625400 9329000 9441300 10046000 8654100 1 1 1 1 1 1 1 1 1 1 1 20563000 36045000 125920 32488000 25051000 25874000 25680000 27173000 27590000 29825000 29679000 19146000 33620000 1742200 33295000 24034000 26796000 26074000 27641000 28059000 29019000 28566000 3 3 1 3 3 3 3 3 3 3 3 2745300000 742400000 2002900000 15381 1806 14105 79785;79786;79787 96436;96437;96438;96439 96439 2431 4 QLALETIDINKDPYFMK Unmodified 2038.0445 0.044513937 1806 Q15428 SF3A2 Splicing factor 3A subunit 2 yes yes 0 0 0 1 By matching By MS/MS 7.67 0.471 1 2 1 2 75.111 75.126 3 1.0087E-05 26184 20211116_3446_TMUAki_TMT10x_S_F7 96.143 80.551 18089000 28709000 106300 30910000 20323000 15472000 21220000 9717100 9052500 11461000 18493000 16843000 26797000 1611900 31147000 19515000 16585000 21100000 10222000 10077000 11122000 17547000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18089000 28709000 106300 30910000 20323000 15472000 21220000 9717100 9052500 11461000 18493000 16843000 26797000 1611900 31147000 19515000 16585000 21100000 10222000 10077000 11122000 17547000 3 3 2 3 3 3 3 3 3 3 3 1442600000 352050000 1090600000 15382 1806 14105 79788;79789;79790 96440;96441;96442 96440 3 QLAPIWDK Unmodified 969.52837 0.5283668 533 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 By MS/MS 7 0 1 1 58.841 59.573 2 0.027514 19216 20211116_3435_TMUAki_TMT10x_P_F7 64.654 31.813 12354000 20865000 189260 23943000 25520000 33111000 19142000 22027000 19193000 17300000 19243000 11504000 19481000 1385000 24346000 24321000 32917000 19751000 22813000 19525000 17091000 18561000 2 2 2 2 2 2 2 2 2 2 2 12354000 20865000 189260 23943000 25520000 33111000 19142000 22027000 19193000 17300000 19243000 11504000 19481000 1385000 24346000 24321000 32917000 19751000 22813000 19525000 17091000 18561000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 487220000 487220000 0 15383 533 14106 79791 96443;96444 96443 2 QLAQIDGTLSTIEFQR Unmodified 1818.9476 0.94757708 2803 Q9H444 CHMP4B Charged multivesicular body protein 4b yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 4 2 2 71.231 71.269 2;3 2.2097E-30 23422 20211116_3433_TMUAki_TMT10x_P_F5 181.67 158.93 10016000 15463000 0 16001000 10767000 14143000 10659000 9295100 8811800 9652600 11821000 9324700 14431000 681860 16258000 10311000 14414000 10761000 9706000 9152200 9412500 11310000 3 3 0 3 3 3 3 3 3 3 3 7245900 11272000 0 11189000 7520200 11614000 7629900 6527600 6265500 6913300 8155500 6746000 10518000 525920 11427000 7208400 11691000 7691300 6905100 6500800 6736000 7808800 2 2 0 2 2 2 2 2 2 2 2 2770200 4191100 0 4812200 3246400 2529200 3029600 2767500 2546400 2739300 3665600 2578700 3913100 155930 4831200 3102100 2722800 3069400 2800900 2651400 2676500 3501400 1 1 0 1 1 1 1 1 1 1 1 1401500000 631450000 770080000 15384 2803 14107 79792;79793;79794;79795 96445;96446;96447;96448;96449 96447 5 QLASEDISHITPTQGFNIK Unmodified 2098.0695 0.069483134 947 P36405 ARL3 ADP-ribosylation factor-like protein 3 yes yes 0 0 0 0 By MS/MS 6 0 1 1 60.6 60.639 3 1.4863E-08 17823 20211116_3434_TMUAki_TMT10x_P_F6 110.26 100.6 5161700 8719600 6437.2 7311800 6732900 13715000 6970700 8284700 7868000 7437600 6883300 4805400 8131100 369930 7654400 6456600 13455000 7086000 8672000 7930100 7298900 6670600 2 2 1 2 2 2 2 2 2 2 2 5161700 8719600 6437.2 7311800 6732900 13715000 6970700 8284700 7868000 7437600 6883300 4805400 8131100 369930 7654400 6456600 13455000 7086000 8672000 7930100 7298900 6670600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 704940000 704940000 0 15385 947 14108 79796 96450;96451 96451 2 QLCDNAGFDATNILNK Unmodified 1792.8414 0.84139745 2609 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 By MS/MS By MS/MS 5.38 1 3 4 4 2 7 6 67.148 67.229 2;3 5.4264E-70 20889 20211116_3445_TMUAki_TMT10x_S_F6 314.29 233.27 86957000 145950000 1381000 151750000 112310000 145520000 98185000 114160000 103600000 109350000 117050000 80974000 136210000 8573500 154310000 107400000 147920000 100500000 117510000 105630000 106990000 112500000 18 18 11 18 18 18 18 18 18 18 18 45214000 74606000 1033700 78452000 68112000 107840000 62020000 58328000 53602000 56707000 60870000 42106000 69630000 4989300 80202000 65215000 106930000 62967000 61754000 55157000 55450000 58494000 9 9 6 9 9 9 9 9 9 9 9 41743000 71342000 347310 73296000 44203000 37679000 36165000 55829000 49995000 52642000 56180000 38868000 66577000 3584200 74103000 42187000 40990000 37533000 55752000 50476000 51544000 54003000 9 9 5 9 9 9 9 9 9 9 9 14825000000 7633600000 7191600000 15386 2609 14109 79797;79798;79799;79800;79801;79802;79803;79804;79805;79806;79807;79808;79809 96452;96453;96454;96455;96456;96457;96458;96459;96460;96461;96462;96463;96464;96465;96466;96467;96468;96469;96470 96468 19 QLDDLKVELSQLR Unmodified 1555.857 0.85697116 1020 P42766 RPL35 60S ribosomal protein L35 yes yes 0 0 0 1 By MS/MS By MS/MS 5.75 1.56 2 2 2 4 4 2 8 8 69.703 69.775 2;3 9.2462E-21 23487 20211116_3435_TMUAki_TMT10x_P_F7 207.3 179.09 255800000 428400000 1398200 386470000 317020000 423020000 280860000 315750000 296650000 300340000 321070000 238180000 399590000 22681000 397770000 303100000 426280000 287270000 325980000 301960000 293960000 308970000 27 27 17 27 27 27 27 27 27 27 27 143690000 235040000 683960 210510000 188040000 309970000 166300000 173490000 163790000 165860000 175990000 133790000 219220000 12734000 217970000 179770000 306580000 169740000 183050000 167170000 162300000 169400000 13 13 10 13 13 13 13 13 13 13 13 112120000 193360000 714200 175960000 128980000 113050000 114570000 142260000 132860000 134490000 145070000 104400000 180360000 9947000 179800000 123330000 119700000 117530000 142930000 134800000 131670000 139570000 14 14 7 14 14 14 14 14 14 14 14 29471000000 15429000000 14042000000 15387 1020 14110 79810;79811;79812;79813;79814;79815;79816;79817;79818;79819;79820;79821;79822;79823;79824;79825 96471;96472;96473;96474;96475;96476;96477;96478;96479;96480;96481;96482;96483;96484;96485;96486;96487;96488;96489;96490;96491;96492;96493;96494;96495;96496;96497;96498;96499 96481 29 QLDEPKLER Unmodified 1126.5982 0.59823728 788 P23588;P23588-2 EIF4B Eukaryotic translation initiation factor 4B yes no 0 0 0 1 By matching By MS/MS 2.5 0.5 1 1 1 1 34.779 34.548 3 0.079035 10837 20211116_3441_TMUAki_TMT10x_S_F3 40.039 17.953 529540 993760 14805 992060 529310 409970 560650 648680 717780 575770 799120 493170 927280 57697 1003500 509210 458920 571920 645310 726230 565330 768370 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 529540 993760 14805 992060 529310 409970 560650 648680 717780 575770 799120 493170 927280 57697 1003500 509210 458920 571920 645310 726230 565330 768370 1 1 1 1 1 1 1 1 1 1 1 64560000 25917000 38643000 15388 788 14111 79826;79827 96500 96500 1 QLEAIDQLHLEYAK Unmodified 1669.8675 0.86753585 235 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 By MS/MS By MS/MS 4.75 0.829 2 1 1 1 3 61.452 61.444 3 5.2735E-10 18186 20211116_3444_TMUAki_TMT10x_S_F5 118.33 101.65 3226300 5504700 0 5203800 3631300 3108500 2898000 3583900 3100000 3325600 3547500 3003900 5135300 258140 5298700 3462500 3306700 2984200 3612200 3160800 3258600 3408300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3226300 5504700 0 5203800 3631300 3108500 2898000 3583900 3100000 3325600 3547500 3003900 5135300 258140 5298700 3462500 3306700 2984200 3612200 3160800 3258600 3408300 1 1 0 1 1 1 1 1 1 1 1 433020000 0 433020000 15389 235 14112 79828;79829;79830;79831 96501;96502;96503;96504 96503 4 QLEAIDQLHLEYAKR Unmodified 1825.9686 0.96864688 235 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 1 By MS/MS By matching 6 0 2 1 1 53.027 53.136 4 8.5848E-07 14725 20211116_3434_TMUAki_TMT10x_P_F6 111.92 84.896 2027700 3188100 0 3235500 3938400 4791000 2635200 2789400 2704700 2559100 2825000 1887400 2975000 129570 3320600 3739300 4739800 2743300 2930200 2752800 2508900 2721400 1 1 0 1 1 1 1 1 1 1 1 2027700 3188100 0 3235500 3938400 4791000 2635200 2789400 2704700 2559100 2825000 1887400 2975000 129570 3320600 3739300 4739800 2743300 2930200 2752800 2508900 2721400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 763840000 400320000 363520000 15390 235 14113 79832;79833 96505 96505 1 QLEAIVR Unmodified 827.4865 0.48650199 912 P33992 MCM5 DNA replication licensing factor MCM5 yes yes 0 0 0 0 By MS/MS 3 0 1 1 38.166 38.196 2 0.037764 11330 20211116_3430_TMUAki_TMT10x_P_F3 75.761 24.795 379760 513550 0 587900 463900 598030 369570 330560 398210 372400 413340 353590 479480 32151 594650 442400 602590 380690 350840 404390 361980 398260 1 1 0 1 1 1 1 1 1 1 1 379760 513550 0 587900 463900 598030 369570 330560 398210 372400 413340 353590 479480 32151 594650 442400 602590 380690 350840 404390 361980 398260 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 58250000 58250000 0 15391 912 14114 79834 96506 96506 1 QLEEAEEEAQRANASR Unmodified 1829.8504 0.85038224 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 37.689 37.646 3 7.1689E-29 9042 20211116_3428_TMUAki_TMT10x_P_F1 184.22 151.22 967270 1531700 3145.8 2102600 1747800 1293200 1020900 1652800 1789100 1155900 1594300 900480 1431400 73551 2092600 1656400 1375400 1097300 1647400 1779500 1149400 1544000 3 3 1 3 3 3 3 3 3 3 3 229010 348300 3145.8 555080 1088300 782320 464000 473470 552690 280460 456460 213250 325770 33953 555070 1028000 776020 506040 491200 554970 281860 443310 1 1 1 1 1 1 1 1 1 1 1 738260 1183400 0 1547500 659440 510870 556870 1179300 1236400 875470 1137800 687230 1105600 39597 1537500 628390 599400 591260 1156200 1224600 867550 1100600 2 2 0 2 2 2 2 2 2 2 2 76333000 56355000 19978000 15392 934 14115 79835;79836 96507;96508;96509 96507 3 QLEEAEEEATRANASR Unmodified 1802.8395 0.8394832 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 1 By MS/MS 1 0 1 1 37.467 37.467 3 1.5962E-10 8958 20211116_3428_TMUAki_TMT10x_P_F1 123.4 83.159 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15393 935 14116 79837 96510 96510 1 QLEESVDALSEELVQLR Unmodified 1957.0004 0.0004005156 906 P33176 KIF5B Kinesin-1 heavy chain yes yes 0 0 0 0 By MS/MS 1 0 1 1 80.181 80.145 3 1.4474E-06 28274 20211116_3439_TMUAki_TMT10x_S_F1 90.806 76.121 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15394 906 14117 79838 96511 96511 1 QLELRQEEER Unmodified 1328.6684 0.66844211 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 31.336 31.096 3 3.2273E-10 9433 20211116_3441_TMUAki_TMT10x_S_F3 168.05 96.982 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15395 1779 14118 79839;79840 96512;96513 96513 2 QLELRQEEERR Unmodified 1484.7696 0.76955314 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 2 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 28.545 28.284 3;4 0.00036226 6871 20211116_3429_TMUAki_TMT10x_P_F2 90.793 64.252 248010 364030 469 377060 331600 341500 227120 247030 246660 217150 278750 230920 339730 20374 383210 315310 347970 236440 255040 251220 213310 267910 3 3 1 3 3 3 3 3 3 3 3 193350 282390 469 278450 255410 298730 182610 192100 188270 168370 216250 180040 263490 17337 284640 243100 300680 189210 199980 192270 165410 207740 1 1 1 1 1 1 1 1 1 1 1 54660 81642 0 98608 76187 42777 44511 54935 58398 48780 62500 50889 76244 3036.9 98563 72213 47295 47235 55056 58948 47895 60164 2 2 0 2 2 2 2 2 2 2 2 27371000 8370800 19000000 15396 1779 14119 79841;79842;79843;79844 96514;96515;96516 96514 3 QLESLIR Unmodified 857.49707 0.49706667 911 P33991;Q9UJA3;Q9UJA3-2;Q9UJA3-3;Q9UJA3-4 MCM4;MCM8 DNA replication licensing factor MCM4;DNA helicase MCM8 yes no 0 0 0 0 By MS/MS 5 0 1 1 46.99 47.154 2 0.029628 12375 20211116_3444_TMUAki_TMT10x_S_F5 76.478 7.3019 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15397 911 14120 79845 96517 96517 1 QLETVLDDLDPENALLPAGFR Unmodified 2325.1852 0.18524117 3022 Q9NYL9 TMOD3 Tropomodulin-3 yes yes 0 0 0 0 By MS/MS By matching 1 0 2 1 1 81.588 81.576 3 2.2348E-05 26931 20211116_3428_TMUAki_TMT10x_P_F1 77.631 64.593 1246600 1797100 84347 1699800 1342400 2517500 1369600 1311500 1115600 1507000 1662600 1161300 1676500 183300 1753200 1293000 2487100 1380000 1400100 1165500 1463700 1586900 1 1 1 1 1 1 1 1 1 1 1 1246600 1797100 84347 1699800 1342400 2517500 1369600 1311500 1115600 1507000 1662600 1161300 1676500 183300 1753200 1293000 2487100 1380000 1400100 1165500 1463700 1586900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 646070000 493990000 152090000 15398 3022 14121 79846;79847 96518 96518 1 QLEVYTSGGDPESVAGEYGR Unmodified 2112.96 0.95999226 3224 Q9Y262;Q9Y262-2 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 0 0 0 0 By MS/MS By MS/MS 3 0.577 1 4 1 3 3 56.162 55.868 2;3 7.9128E-91 19527 20211116_3441_TMUAki_TMT10x_S_F3 320.05 289.18 10549000 18217000 244480 18194000 12972000 16616000 12329000 11427000 11238000 10744000 13062000 9823600 16998000 1050200 18539000 12431000 16908000 12505000 11859000 11545000 10521000 12544000 7 7 5 7 7 7 7 7 7 7 7 6258700 10679000 208860 10152000 8220300 13150000 8484500 6793900 6658200 6445000 7446500 5829000 9963100 741010 10439000 7901300 13069000 8535800 7217900 6881500 6308900 7159000 4 4 4 4 4 4 4 4 4 4 4 4290700 7537300 35623 8042300 4751400 3466400 3844200 4632600 4579800 4298700 5615100 3994600 7035000 309190 8100400 4529700 3839800 3969600 4641300 4663700 4212100 5384700 3 3 1 3 3 3 3 3 3 3 3 1967700000 1505400000 462240000 15399 3224 14122 79848;79849;79850;79851;79852;79853 96519;96520;96521;96522;96523;96524;96525;96526 96525 8 QLFDQVVK Unmodified 975.53893 0.53893149 682;926 P15311;P26038;P35241;P35241-5 EZR;MSN;RDX Ezrin;Moesin;Radixin no no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 56.297 56.599 2 0.0034775 16565 20211116_3445_TMUAki_TMT10x_S_F6 98.033 35.833 7775300 12683000 63735 14920000 11974000 12583000 8569800 11023000 11529000 9805900 11061000 7239900 11843000 741000 15028000 11398000 12928000 8962400 11249000 11583000 9627100 10684000 2 2 1 2 2 2 2 2 2 2 2 3825000 6068800 0 7272200 8348500 9047900 5165000 4785800 5146900 4307200 5127300 3561300 5667300 358640 7360400 7923500 9012100 5405000 5066600 5236100 4226400 4946700 1 1 0 1 1 1 1 1 1 1 1 3950300 6614500 63735 7647600 3625700 3535200 3404800 6236900 6382500 5498700 5933300 3678600 6175900 382360 7667300 3474800 3915800 3557400 6182800 6346900 5400700 5737500 1 1 1 1 1 1 1 1 1 1 1 664260000 360870000 303390000 15400 682;926 14123 79854;79855;79856 96527;96528;96529 96528 3 QLFHPEQLITGK Unmodified 1409.7667 0.76669959 1417;2044;2007 P68363;P68363-2;P68366;P68366-2;Q71U36;Q71U36-2;Q9BQE3;P0DPH8;P0DPH7;P0DPH7-2;Q9NY65;Q9NY65-2;Q6PEY2 TUBA1B;TUBA4A;TUBA1A;TUBA1C;TUBA8;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-8 chain;Tubulin alpha-3E chain no no 0 0 0 0 By MS/MS By MS/MS 6.25 2.22 2 2 2 4 6 9 7 64.417 64.577 2;3 1.9912E-16 17561 20211116_3436_TMUAki_TMT10x_P_F8 205.46 0 287120000 432830000 4933100 526150000 355230000 431620000 309160000 287710000 287710000 306480000 336780000 267360000 404220000 27732000 528760000 339640000 442310000 315340000 300340000 295370000 298550000 323360000 29 29 14 29 29 29 29 29 29 29 29 188660000 276650000 460500 337450000 273770000 341260000 220290000 184740000 183180000 197450000 213680000 175650000 258370000 16092000 340020000 261110000 343900000 225100000 196110000 189060000 192320000 205180000 17 17 6 17 17 17 17 17 17 17 17 98460000 156180000 4472600 188700000 81459000 90362000 88868000 102960000 104530000 109030000 123100000 91705000 145850000 11640000 188740000 78534000 98403000 90240000 104230000 106310000 106230000 118180000 12 12 8 12 12 12 12 12 12 12 12 78716000000 43979000000 34737000000 15401 1417;2044;2007 14124 79857;79858;79859;79860;79861;79862;79863;79864;79865;79866;79867;79868;79869;79870;79871;79872 96530;96531;96532;96533;96534;96535;96536;96537;96538;96539;96540;96541;96542;96543;96544;96545;96546;96547;96548;96549;96550;96551;96552;96553;96554;96555;96556;96557;96558 96543 29 QLFHPEQLITGKEDAANNYAR Unmodified 2414.1979 0.19787154 1417;2044 P68363;P68363-2;P68366;P68366-2;Q71U36;Q71U36-2;Q9BQE3;P0DPH8;P0DPH7;P0DPH7-2;Q9NY65;Q9NY65-2 TUBA1B;TUBA4A;TUBA1A;TUBA1C;TUBA8 Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-8 chain no no 0 0 0 1 By MS/MS By MS/MS 5.92 2.1 4 1 1 3 6 16 5 16 20 43.21 43.338 2;3;4 9.9607E-81 18003 20211116_3435_TMUAki_TMT10x_P_F7 281.65 262.59 393660000 671790000 1929500 640020000 511080000 609150000 450860000 516050000 486700000 469320000 483400000 366510000 626730000 31425000 654710000 488350000 620370000 461580000 527980000 493450000 460290000 466420000 53 53 18 53 53 53 53 53 53 53 53 206030000 353310000 732760 327230000 278220000 423590000 269900000 279260000 256050000 247970000 249060000 191810000 329580000 15029000 337110000 266360000 422340000 273780000 290280000 260850000 243470000 240480000 23 23 8 23 23 23 23 23 23 23 23 187630000 318470000 1196800 312790000 232870000 185560000 180950000 236790000 230650000 221360000 234340000 174710000 297150000 16396000 317600000 222000000 198040000 187800000 237700000 232610000 216820000 225940000 30 30 10 30 30 30 30 30 30 30 30 412440000000 214480000000 197960000000 15402 1417;2044 14125 79873;79874;79875;79876;79877;79878;79879;79880;79881;79882;79883;79884;79885;79886;79887;79888;79889;79890;79891;79892;79893;79894;79895;79896;79897;79898;79899;79900;79901;79902;79903;79904;79905;79906;79907;79908 96559;96560;96561;96562;96563;96564;96565;96566;96567;96568;96569;96570;96571;96572;96573;96574;96575;96576;96577;96578;96579;96580;96581;96582;96583;96584;96585;96586;96587;96588;96589;96590;96591;96592;96593;96594;96595;96596;96597;96598;96599;96600;96601;96602;96603;96604;96605;96606;96607;96608;96609;96610;96611;96612 96576 54 QLFSSLFSGILK Unmodified 1338.7547 0.75473792 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS 7 0 1 1 80.989 81.01 3 2.0029E-05 28225 20211116_3435_TMUAki_TMT10x_P_F7 94.122 67.998 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15403 1433 14126 79909 96613 96613 1 QLGLPTALKR Unmodified 1095.6764 0.67642802 3154 Q9UKD2 MRTO4 mRNA turnover protein 4 homolog yes yes 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 43.186 43.193 3 3.2744E-05 12779 20211116_3431_TMUAki_TMT10x_P_F4 98.156 77.531 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15404 3154 14127 79910;79911;79912 96614;96615;96616 96614 3 QLGLVVCR Unmodified 943.52732 0.52732094 3149 Q9UK45 LSM7 U6 snRNA-associated Sm-like protein LSm7 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 44.357 44.329 2 0.00043936 11284 20211116_3447_TMUAki_TMT10x_S_F8 149.48 98.517 8392200 13393000 74164 14616000 12027000 11493000 8746900 10115000 9818000 9055500 10979000 7814000 12502000 751900 14777000 11450000 11870000 9077000 10322000 9982400 8887700 10555000 4 4 3 4 4 4 4 4 4 4 4 3305300 5332500 0 5247800 6778800 6789200 4237300 3538500 3404100 3237400 3981800 3077000 4975500 258790 5382600 6431800 6748200 4405200 3752800 3520000 3174200 3823200 1 1 0 1 1 1 1 1 1 1 1 5086900 8060500 74164 9367800 5248300 4704300 4509600 6576500 6413900 5818100 6997600 4737000 7526200 493120 9394600 5018200 5122200 4671900 6569300 6462400 5713500 6732200 3 3 3 3 3 3 3 3 3 3 3 352890000 166580000 186310000 15405 3149 14128 79913;79914;79915;79916 96617;96618;96619;96620;96621 96621 5 QLGVAESESSGAPIDLLYELVK Unmodified 2317.2053 0.20530791 444 O95785;O95785-4;O95785-3 WIZ Protein Wiz yes no 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 81.73 81.709 3 0.093557 29936 20211116_3441_TMUAki_TMT10x_S_F3 26.046 18.595 359880 531280 0 490420 446550 389890 466200 389340 410380 415260 450550 335000 495590 20534 501690 427980 403380 470130 396660 421360 404500 433380 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 359880 531280 0 490420 446550 389890 466200 389340 410380 415260 450550 335000 495590 20534 501690 427980 403380 470130 396660 421360 404500 433380 1 1 0 1 1 1 1 1 1 1 1 273010000 0 273010000 15406 444 14129 79917;79918 96622 96622 1 QLHDDYFYHDEL Unmodified 1593.6736 0.67358707 1701 Q14257;Q14257-2 RCN2 Reticulocalbin-2 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 51.436 51.287 3 3.5223E-06 16079 20211116_3429_TMUAki_TMT10x_P_F2 110.98 105.98 18405000 29997000 156230 32023000 23722000 25268000 20847000 19774000 19577000 18238000 22806000 17137000 27998000 1542800 32425000 22670000 26034000 21257000 20336000 20087000 17875000 21900000 8 8 4 8 8 8 8 8 8 8 8 8634800 14115000 70193 14562000 13896000 16908000 11020000 9090300 9071100 8429300 10347000 8038900 13172000 670680 14859000 13244000 16904000 11268000 9617100 9358900 8259700 9941500 4 4 2 4 4 4 4 4 4 4 4 9770500 15882000 86041 17461000 9826700 8360000 9827100 10684000 10506000 9808700 12459000 9097800 14826000 872120 17565000 9426300 9130200 9989000 10719000 10728000 9615700 11958000 4 4 2 4 4 4 4 4 4 4 4 3453500000 1950100000 1503500000 15407 1701 14130 79919;79920;79921;79922;79923;79924;79925;79926 96623;96624;96625;96626;96627;96628;96629;96630;96631 96624 9 QLHLNQLIR Unmodified 1133.6669 0.66692597 1114 P49736 MCM2 DNA replication licensing factor MCM2 yes yes 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 44.019 43.927 3 2.2952E-06 13162 20211116_3429_TMUAki_TMT10x_P_F2 164.96 132.11 2375400 3561500 10678 4287600 4160300 4237900 2634900 2968100 2918200 2637100 3168900 2211800 3326000 221470 4322000 3950700 4291800 2761200 3072000 2965300 2589200 3049100 3 3 1 3 3 3 3 3 3 3 3 1728300 2579700 0 3098300 3552700 3674600 2087600 2110500 2086400 1928700 2274800 1609100 2409100 158420 3132700 3369000 3672800 2194100 2219300 2129300 1891100 2188500 2 2 0 2 2 2 2 2 2 2 2 647180 981780 10678 1189300 607610 563250 547340 857610 831770 708450 894100 602660 916890 63053 1189300 581740 619030 567140 852630 835940 698050 860580 1 1 1 1 1 1 1 1 1 1 1 671150000 526510000 144640000 15408 1114 14131 79927;79928;79929;79930 96632;96633;96634;96635 96633 4 QLICDPSYIPDR Unmodified 1475.7079 0.70786408 884 P31150 GDI1 Rab GDP dissociation inhibitor alpha yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.756 2 3 2 4 3 53.428 53.461 2;3 9.7107E-20 16238 20211116_3442_TMUAki_TMT10x_S_F4 233.13 197.62 15814000 26696000 89863 29639000 22611000 28034000 18463000 22992000 21291000 20456000 22223000 14724000 24922000 1424000 30005000 21578000 28545000 19033000 23555000 21569000 20083000 21409000 7 7 4 7 7 7 7 7 7 7 7 8623200 13848000 63300 15708000 15932000 21714000 12976000 12308000 11306000 10954000 11364000 8029200 12928000 828680 15983000 15203000 21539000 13265000 12948000 11577000 10754000 10960000 4 4 2 4 4 4 4 4 4 4 4 7190500 12849000 26563 13932000 6679500 6320600 5487600 10684000 9985300 9501300 10859000 6695100 11993000 595310 14022000 6375000 7006600 5767900 10607000 9992500 9328200 10449000 3 3 2 3 3 3 3 3 3 3 3 2961900000 1727400000 1234500000 15409 884 14132 79931;79932;79933;79934;79935;79936;79937 96636;96637;96638;96639;96640;96641;96642 96641 7 QLICDPSYIPDRVR Unmodified 1730.8774 0.87738903 884 P31150 GDI1 Rab GDP dissociation inhibitor alpha yes yes 0 0 0 1 By MS/MS 7 0 1 1 49.183 49.666 3 0.015131 15704 20211116_3446_TMUAki_TMT10x_S_F7 57.267 36.604 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15410 884 14133 79938 96643 96643 1 QLICDPSYVK Unmodified 1221.6064 0.60635913 1133 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 50.977 51.133 2 1.1008E-08 13868 20211116_3434_TMUAki_TMT10x_P_F6 174.98 131.9 14238000 21568000 226760 31197000 25576000 21807000 15358000 18481000 20349000 15428000 21571000 13259000 20161000 1492300 31006000 24277000 22720000 16267000 18867000 20526000 15194000 20771000 5 5 2 5 5 5 5 5 5 5 5 5644500 8341100 22422 11654000 19845000 15895000 9063800 7024100 7971300 6133500 8056900 5255500 7795500 656060 11718000 18756000 15732000 9723700 7562600 8160300 6027000 7769500 2 2 1 2 2 2 2 2 2 2 2 8593900 13227000 204340 19543000 5731300 5912500 6294200 11457000 12377000 9294800 13514000 8003000 12366000 836210 19287000 5520200 6988700 6543400 11304000 12366000 9166800 13001000 3 3 1 3 3 3 3 3 3 3 3 1472600000 866820000 605800000 15411 1133 14134 79939;79940;79941;79942 96644;96645;96646;96647;96648 96645 5 QLIVANAGDSR Unmodified 1142.6044 0.60438529 183 O15355 PPM1G Protein phosphatase 1G yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 34.028 34.114 2 6.2247E-16 8543 20211116_3442_TMUAki_TMT10x_S_F4 210.08 173.37 228370 363690 0 410390 231890 170340 213000 213230 234360 205930 292980 212610 339530 15378 411780 221640 189300 217700 214410 239570 201420 280810 3 3 0 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 228370 363690 0 410390 231890 170340 213000 213230 234360 205930 292980 212610 339530 15378 411780 221640 189300 217700 214410 239570 201420 280810 3 3 0 3 3 3 3 3 3 3 3 8892300 0 8892300 15412 183 14135 79943;79944 96649;96650;96651;96652 96650 4 QLIVGVNK Unmodified 869.53345 0.53345218 1416;1520 P68104;Q5VTE0;Q05639 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2 no no 0 0 0 0 By MS/MS By MS/MS 4.62 2.58 5 2 2 2 2 3 4 4 11 13 47.69 47.775 2;3 0.00029065 14936 20211116_3446_TMUAki_TMT10x_S_F7 187.93 91.972 237100000 354930000 3612100 397260000 261050000 346820000 233410000 249780000 219220000 237410000 272320000 220780000 331340000 20724000 401520000 249740000 354250000 237760000 258490000 225520000 232380000 261050000 27 27 16 27 27 27 27 27 27 27 27 149590000 217680000 1694400 238030000 198470000 265170000 160110000 148650000 137960000 146840000 166760000 139280000 203200000 13296000 241790000 189350000 265850000 163730000 156960000 142340000 143480000 159980000 14 14 8 14 14 14 14 14 14 14 14 87510000 137240000 1917700 159230000 62582000 81649000 73297000 101130000 81260000 90574000 105550000 81494000 128150000 7428500 159730000 60388000 88402000 74035000 101530000 83181000 88894000 101070000 13 13 8 13 13 13 13 13 13 13 13 32466000000 17385000000 15081000000 15413 1416;1520 14136 79945;79946;79947;79948;79949;79950;79951;79952;79953;79954;79955;79956;79957;79958;79959;79960;79961;79962;79963;79964;79965;79966;79967;79968 96653;96654;96655;96656;96657;96658;96659;96660;96661;96662;96663;96664;96665;96666;96667;96668;96669;96670;96671;96672;96673;96674;96675;96676;96677;96678;96679;96680;96681;96682;96683 96679 31 QLLAEESLPTTPFYFILGK Unmodified 2166.1613 0.16125825 2141 Q8IWA0 WDR75 WD repeat-containing protein 75 yes yes 0 0 0 0 By MS/MS By MS/MS 4 2.83 2 1 1 2 82.106 82.103 3 1.4195E-17 27322 20211116_3440_TMUAki_TMT10x_S_F2 143.39 125.47 3938200 6432000 15757 6599800 4685200 5126600 5090300 3519400 3657200 4040100 5980800 3666800 6002300 328560 6699000 4502000 5277400 5097700 3675000 3865700 3924400 5697500 4 4 2 4 4 4 4 4 4 4 4 1319400 2087900 10803 2083800 1279200 2239900 1525200 1217400 1303200 1415300 2023000 1228600 1948200 118900 2128400 1233400 2249200 1527300 1295300 1361100 1374100 1929300 1 1 1 1 1 1 1 1 1 1 1 2618700 4344100 4953.9 4516000 3405900 2886700 3565100 2302000 2354000 2624800 3957800 2438100 4054100 209660 4570600 3268500 3028200 3570400 2379700 2504700 2550200 3768300 3 3 1 3 3 3 3 3 3 3 3 663830000 358400000 305430000 15414 2141 14137 79969;79970;79971 96684;96685;96686;96687 96685 4 QLLAGGIAGAVSR Unmodified 1211.6986 0.69862003 1983 Q6NUK1;Q6NUK1-2 SLC25A24 Calcium-binding mitochondrial carrier protein SCaMC-1 yes no 0 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 53.404 53.202 2 2.8713E-06 16893 20211116_3429_TMUAki_TMT10x_P_F2 116.41 85.336 14529000 24484000 148620 24498000 17719000 22992000 15706000 18810000 19867000 17006000 19298000 13529000 22847000 1351900 24969000 16946000 23422000 16166000 19282000 20009000 16683000 18634000 3 3 2 3 3 3 3 3 3 3 3 6201800 10332000 85657 9315300 9372600 15242000 8247500 9481200 10534000 8438800 8491100 5775100 9637100 638410 9663600 8963800 15033000 8495400 9899300 10544000 8284700 8254300 1 1 1 1 1 1 1 1 1 1 1 8327100 14152000 62967 15183000 8346800 7750200 7458700 9328700 9332400 8567100 10807000 7753600 13210000 713470 15305000 7982400 8389300 7670100 9382300 9464400 8398400 10380000 2 2 1 2 2 2 2 2 2 2 2 742440000 385070000 357370000 15415 1983 14138 79972;79973;79974;79975 96688;96689;96690 96688 3 QLLEELER Unmodified 1028.5502 0.55022446 2985 Q9NWB6;Q9NWB6-3;Q9NWB6-2 ARGLU1 Arginine and glutamate-rich protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 57.151 56.919 2 0.085238 20025 20211116_3441_TMUAki_TMT10x_S_F3 59.426 11.573 2226800 3664600 39768 3817200 3576500 5112800 2964800 2997300 3114100 2806100 3107500 2073700 3420000 240580 3902800 3416300 5081100 3043900 3148500 3161200 2748500 2997900 1 1 1 1 1 1 1 1 1 1 1 2226800 3664600 39768 3817200 3576500 5112800 2964800 2997300 3114100 2806100 3107500 2073700 3420000 240580 3902800 3416300 5081100 3043900 3148500 3161200 2748500 2997900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 183950000 183950000 0 15416 2985 14139 79976;79977 96691;96692 96692 2 QLLLTADDR Unmodified 1043.5611 0.56112349 482 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 45.88 45.88 2 2.2966E-06 12738 20211116_3431_TMUAki_TMT10x_P_F4 192.91 99.762 14360000 21732000 116910 26810000 19291000 18432000 15239000 15384000 15876000 14471000 19500000 13371000 20297000 1322600 26867000 18400000 19226000 15689000 15768000 16252000 14170000 18698000 5 5 3 5 5 5 5 5 5 5 5 5282000 8064600 58243 9630300 12437000 11387000 6934500 5783500 6235200 5284300 6795400 4918200 7530900 554010 9740200 11788000 11366000 7300000 6148100 6393700 5181500 6538000 2 2 1 2 2 2 2 2 2 2 2 9078400 13668000 58668 17180000 6854200 7044900 8304900 9600200 9640700 9186200 12704000 8453300 12766000 768640 17127000 6611600 7859400 8389500 9619500 9858000 8988800 12160000 3 3 2 3 3 3 3 3 3 3 3 818940000 415060000 403870000 15417 482 14140 79978;79979;79980;79981 96693;96694;96695;96696;96697 96694 5 QLLNCLHVVTLYNR Unmodified 1741.9298 0.92975895 620 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 By MS/MS 4 0 1 1 62.722 62.574 3 8.3648E-07 20041 20211116_3442_TMUAki_TMT10x_S_F4 116.58 102.61 3117800 5408800 0 5384300 4006700 3150400 3114600 3727800 3461100 4110200 4467800 2902900 5046900 265670 5461200 3819000 3360200 3216600 3772500 3541700 3998500 4278800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3117800 5408800 0 5384300 4006700 3150400 3114600 3727800 3461100 4110200 4467800 2902900 5046900 265670 5461200 3819000 3360200 3216600 3772500 3541700 3998500 4278800 1 1 0 1 1 1 1 1 1 1 1 332670000 0 332670000 15418 620 14141 79982 96698 96698 1 QLLQANPILEAFGNAK Unmodified 1725.9414 0.94136949 934;2078 P35579;P35579-2;Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-5;Q7Z406-4 MYH9;MYH14 Myosin-9;Myosin-14 no no 0 0 0 0 By MS/MS By MS/MS 3.2 2.48 2 4 2 2 4 6 79.112 79.083 2;3 2.0062E-29 27378 20211116_3429_TMUAki_TMT10x_P_F2 197.07 163.81 32362000 54769000 279820 48260000 44630000 50741000 39237000 39728000 37277000 38419000 41869000 30133000 51081000 3013700 49730000 42668000 51291000 40022000 40909000 38172000 37576000 40247000 5 5 2 5 5 5 5 5 5 5 5 18260000 30276000 165890 26942000 16417000 33689000 20396000 19320000 18964000 19944000 22262000 17003000 28239000 1586300 27821000 15848000 33581000 20437000 20387000 19473000 19452000 21373000 3 3 1 3 3 3 3 3 3 3 3 14102000 24493000 113930 21318000 28213000 17052000 18841000 20408000 18313000 18475000 19607000 13131000 22842000 1427400 21909000 26820000 17710000 19585000 20522000 18699000 18123000 18874000 2 2 1 2 2 2 2 2 2 2 2 8983100000 4678100000 4305100000 15419 934;2078 14142 79983;79984;79985;79986;79987;79988;79989;79990;79991;79992 96699;96700;96701;96702;96703;96704;96705;96706;96707 96701 9 QLLQANPILESFGNAK Unmodified 1741.9363 0.93628412 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS By MS/MS 3.14 3.09 4 1 2 3 4 79.114 79.093 2;3 4.1014E-60 27260 20211116_3439_TMUAki_TMT10x_S_F1 290.13 253.68 10756000 18865000 90324 17132000 12409000 16812000 13366000 12028000 11596000 12593000 14033000 10015000 17596000 941320 17595000 11924000 17039000 13453000 12488000 11961000 12276000 13462000 5 5 2 5 5 5 5 5 5 5 5 5460600 9380100 2389.6 8414500 5245200 10481000 6525100 6091600 5794900 6416800 7000700 5084100 8749000 415040 8683300 5059200 10452000 6529200 6424800 5970100 6253500 6716000 3 3 1 3 3 3 3 3 3 3 3 5295500 9484500 87935 8717000 7163900 6330800 6841000 5936400 5800900 6176300 7032800 4931200 8847200 526280 8911300 6864900 6587700 6923800 6062800 5990600 6022200 6746200 2 2 1 2 2 2 2 2 2 2 2 2788300000 1497300000 1291000000 15420 935 14143 79993;79994;79995;79996;79997;79998;79999 96708;96709;96710;96711;96712;96713;96714 96712 7 QLLQTVNVPIIDGAK Unmodified 1607.9247 0.9246568 1501 Q02952;Q02952-3;Q02952-2 AKAP12 A-kinase anchor protein 12 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 4 2 2 74.827 74.771 2;3 1.0943E-33 24266 20211116_3436_TMUAki_TMT10x_P_F8 233.37 209.52 26396000 45221000 65734 41046000 32885000 49844000 32863000 37793000 35005000 36065000 35588000 24576000 42180000 2149200 42300000 31522000 49964000 33402000 38982000 35539000 35294000 34313000 7 7 3 7 7 7 7 7 7 7 7 16954000 27813000 0 25003000 19976000 38647000 21938000 24787000 22738000 23589000 22197000 15785000 25942000 1256700 25910000 19190000 38218000 22175000 25865000 23078000 23087000 21429000 4 4 0 4 4 4 4 4 4 4 4 9441400 17407000 65734 16043000 12909000 11197000 10925000 13006000 12267000 12476000 13391000 8791300 16238000 892590 16390000 12332000 11746000 11227000 13117000 12460000 12207000 12883000 3 3 3 3 3 3 3 3 3 3 3 3539500000 1474900000 2064600000 15421 1501 14144 80000;80001;80002;80003 96715;96716;96717;96718;96719;96720;96721 96717 7 QLLTDFCTHLPNLPDSTAK Unmodified 2170.0729 0.072853952 2659 Q9BT78;Q9BT78-2 COPS4 COP9 signalosome complex subunit 4 yes no 0 0 0 0 By MS/MS 8 0 1 1 71.507 71.57 3 3.58E-06 22940 20211116_3436_TMUAki_TMT10x_P_F8 87.554 72.94 5911200 9716300 36187 9604900 5877200 12414000 6897500 6168600 6298300 6676000 7244800 5504100 9065900 505170 9848500 5662000 12333000 6924500 6602200 6467300 6499200 6959500 2 2 1 2 2 2 2 2 2 2 2 5911200 9716300 36187 9604900 5877200 12414000 6897500 6168600 6298300 6676000 7244800 5504100 9065900 505170 9848500 5662000 12333000 6924500 6602200 6467300 6499200 6959500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 843160000 843160000 0 15422 2659 14145 80004 96722;96723 96723 2 QLLTLSSELSQAR Unmodified 1444.7886 0.78855725 682 P15311 EZR Ezrin yes yes 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 63.404 63.831 2 1.0473E-20 19771 20211116_3436_TMUAki_TMT10x_P_F8 199.12 157.01 6614000 11646000 0 10336000 9192200 15375000 8853000 9279800 8270400 8379500 8549000 6158100 10862000 560390 10712000 8803800 15215000 8979700 9715700 8449100 8221000 8238300 2 2 0 2 2 2 2 2 2 2 2 6614000 11646000 0 10336000 9192200 15375000 8853000 9279800 8270400 8379500 8549000 6158100 10862000 560390 10712000 8803800 15215000 8979700 9715700 8449100 8221000 8238300 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 937520000 937520000 0 15423 682 14146 80005;80006 96724;96725 96725 2 QLLTLSSELSQARDENKR Unmodified 2087.0971 0.097094868 682 P15311 EZR Ezrin yes yes 0 0 0 2 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 51.23 51.518 4 2.1682E-50 14771 20211116_3436_TMUAki_TMT10x_P_F8 231.44 175.23 21958000 36642000 2000.9 38752000 35279000 40423000 27653000 33955000 29592000 28144000 31802000 20444000 34199000 1864200 39409000 33626000 40931000 28508000 34676000 30099000 27726000 30610000 6 6 1 6 6 6 6 6 6 6 6 14221000 23277000 2000.9 23807000 26306000 34232000 21582000 21486000 18968000 18143000 19692000 13241000 21722000 1276400 24406000 25100000 33943000 22058000 22389000 19437000 17857000 18974000 4 4 1 4 4 4 4 4 4 4 4 7736700 13365000 0 14945000 8972800 6191100 6070400 12469000 10624000 10001000 12110000 7203100 12477000 587730 15004000 8526000 6988100 6450200 12287000 10662000 9869400 11636000 2 2 0 2 2 2 2 2 2 2 2 2768800000 1409000000 1359900000 15424 682 14147 80007;80008;80009;80010 96726;96727;96728;96729;96730;96731 96728 6 QLMVAMPLLPVPS Unmodified 1394.7666 0.76656494 2987 Q9NWS0 PIH1D1 PIH1 domain-containing protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 2.62 1 1 1 2 1 82.493 82.485 2 2.9534E-05 30223 20211116_3441_TMUAki_TMT10x_S_F3 89.543 60.8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15425 2987 14148 80011;80012;80013 96732;96733;96734 96734 3 QLNPESIRPGGPGGLSR Unmodified 1733.9173 0.91728001 2055 Q7L2E3;Q7L2E3-2;Q7L2E3-3 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 0 0 0 1 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 40.56 40.662 3 3.9181E-22 9685 20211116_3447_TMUAki_TMT10x_S_F8 176.85 144.23 2395300 4156200 5801 4716900 3894600 4152700 2373900 3813200 3893900 3145600 3490600 2230100 3880300 208830 4763900 3695400 4257700 2534500 3874100 3880500 3099700 3379700 4 4 2 4 4 4 4 4 4 4 4 1167600 2012500 1296.2 2257500 2979300 3198800 1565500 1879300 1849100 1516300 1728100 1087100 1878800 114860 2299800 2820700 3171100 1670600 1966500 1864500 1495900 1670800 2 2 1 2 2 2 2 2 2 2 2 1227700 2143700 4504.8 2459300 915320 953880 808420 1933800 2044800 1629300 1762500 1143100 2001500 93968 2464100 874740 1086600 863870 1907600 2016100 1603800 1709000 2 2 1 2 2 2 2 2 2 2 2 258620000 114840000 143780000 15426 2055 14149 80014;80015;80016 96735;96736;96737;96738 96738 4 QLNVNAKPFVPNVHAAEFVPSFLR Unmodified 2693.4442 0.44419025 681 P15170-3;P15170-2 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 74.559 74.553 4 4.2981E-22 23564 20211116_3444_TMUAki_TMT10x_S_F5 141.45 133.36 45636000 77919000 393920 67768000 52450000 71824000 52648000 51444000 50007000 50740000 55229000 42491000 72669000 3810400 69913000 50292000 72462000 53311000 53312000 51175000 49584000 53116000 8 8 3 8 8 8 8 8 8 8 8 23650000 39898000 27904 34230000 20846000 44303000 27334000 23031000 22611000 23938000 25174000 22019000 37208000 1676300 35472000 20135000 44034000 27240000 24517000 23300000 23342000 24205000 5 5 1 5 5 5 5 5 5 5 5 21986000 38021000 366020 33538000 31604000 27521000 25315000 28413000 27396000 26802000 30055000 20472000 35461000 2134100 34441000 30156000 28428000 26071000 28795000 27874000 26243000 28911000 3 3 2 3 3 3 3 3 3 3 3 6731900000 3567900000 3164000000 15427 681 14150 80017;80018;80019;80020 96739;96740;96741;96742;96743;96744;96745;96746 96745 8 QLPAQPPEHAVDGEGFK Unmodified 1818.8901 0.89006221 1683 Q14151 SAFB2 Scaffold attachment factor B2 yes yes 0 0 0 0 By MS/MS 4 0 1 1 45.203 45.315 3 0.00014244 12493 20211116_3431_TMUAki_TMT10x_P_F4 73.928 62.667 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15428 1683 14151 80021 96747 96747 1 QLPDKWQHDLFDSGFGGGAGVETGGK Unmodified 2702.2725 0.27249305 2113 Q86V81 ALYREF THO complex subunit 4 yes yes 0 0 0 1 By MS/MS By MS/MS 6.8 0.748 4 4 2 5 5 67.369 67.534 4;5 2.2115E-49 20613 20211116_3434_TMUAki_TMT10x_P_F6 211.5 193.99 120220000 213110000 1360100 200080000 157790000 170310000 164670000 79774000 73325000 97917000 133470000 111940000 198800000 11448000 204590000 151530000 173310000 163850000 86221000 80727000 94883000 126900000 17 17 13 17 17 17 17 17 17 17 17 62752000 108130000 706790 100100000 77121000 111670000 90869000 43725000 41666000 49268000 64247000 58434000 100870000 6062600 102860000 74336000 111520000 89930000 48051000 45342000 47889000 61278000 9 9 9 9 9 9 9 9 9 9 9 57463000 104980000 653330 99979000 80665000 58646000 73805000 36049000 31659000 48649000 69227000 53507000 97937000 5385800 101730000 77192000 61786000 73917000 38170000 35385000 46994000 65617000 8 8 4 8 8 8 8 8 8 8 8 24870000000 13348000000 11522000000 15429 2113 14152 80022;80023;80024;80025;80026;80027;80028;80029;80030;80031 96748;96749;96750;96751;96752;96753;96754;96755;96756;96757;96758;96759;96760;96761;96762;96763;96764 96748 17 QLPEEDFRQPPEEDLR Unmodified 1996.949 0.94903365 2161 Q8IXT5 RBM12B RNA-binding protein 12B yes yes 0 0 0 1 By MS/MS 1 0 1 1 47.471 47.471 3 5.6121E-15 12996 20211116_3428_TMUAki_TMT10x_P_F1 132.14 108.91 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15430 2161 14153 80032 96765 96765 1 QLPFRGDDGIFDDNFIEER Unmodified 2282.0604 0.060375011 269 O60493;O60493-2;O60493-4 SNX3 Sorting nexin-3 yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 72.747 72.636 3 1.3191E-31 25233 20211116_3439_TMUAki_TMT10x_S_F1 190.71 173.11 23513000 39572000 470860 38400000 28770000 36575000 29128000 20222000 18977000 21764000 28608000 21896000 36920000 2397700 39230000 27619000 37005000 29213000 21432000 20092000 21192000 27299000 6 6 5 6 6 6 6 6 6 6 6 12629000 21026000 303200 20595000 12725000 22896000 15015000 10039000 9013500 11580000 14706000 11761000 19618000 1266800 21075000 12273000 22894000 14924000 10902000 9634300 11247000 14010000 3 3 2 3 3 3 3 3 3 3 3 10884000 18546000 167650 17805000 16045000 13679000 14113000 10183000 9963600 10183000 13903000 10136000 17302000 1130900 18154000 15346000 14111000 14288000 10530000 10458000 9945400 13290000 3 3 3 3 3 3 3 3 3 3 3 1500800000 961580000 539200000 15431 269 14154 80033;80034;80035 96766;96767;96768;96769;96770;96771 96769 6 QLPLVKPYLR Unmodified 1225.7547 0.75467834 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 1 By MS/MS 3.5 0.5 1 1 2 53.91 53.744 3 4.9473E-09 18703 20211116_3441_TMUAki_TMT10x_S_F3 134.68 106.47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15432 1471 14155 80036;80037 96772;96773 96772 2 QLPPVDAELDNVNNVLR Unmodified 1904.9956 0.99558991 219 O43490;O43490-5;O43490-3;O43490-4;O43490-6;O43490-7;O43490-2 PROM1 Prominin-1 yes no 0 0 0 0 By MS/MS 4 0 1 1 71.494 71.556 3 0.1055 23216 20211116_3431_TMUAki_TMT10x_P_F4 27.59 7.7516 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15433 219 14156 80038 96774 96774 1 QLPTAAPDKTEVTGDHIPTPQDLPQR Unmodified 2824.4355 0.43553563 1256 P56211;P56211-2 ARPP19 cAMP-regulated phosphoprotein 19 yes no 0 0 0 1 By MS/MS By MS/MS 5.8 0.748 2 2 1 3 2 52.109 52.371 4 3.0802E-17 14309 20211116_3434_TMUAki_TMT10x_P_F6 127.38 122.97 23230000 41386000 301580 43711000 36832000 48879000 30949000 28470000 25811000 28022000 32243000 21631000 38627000 2310700 44505000 35181000 49018000 31541000 29963000 26711000 27386000 30904000 11 11 7 11 11 11 11 11 11 11 11 19250000 33503000 259120 35483000 32497000 44695000 27398000 23383000 21180000 22732000 25985000 17925000 31269000 1936200 36197000 31042000 44485000 27865000 24830000 21990000 22228000 24918000 9 9 5 9 9 9 9 9 9 9 9 3979800 7883700 42465 8227700 4335300 4184800 3550500 5086600 4630300 5290300 6257300 3705900 7357600 374510 8308800 4139700 4532800 3675900 5132300 4721000 5158400 5985800 2 2 2 2 2 2 2 2 2 2 2 3300100000 2180200000 1119900000 15434 1256 14157 80039;80040;80041;80042;80043 96775;96776;96777;96778;96779;96780;96781;96782;96783;96784;96785 96777 11 QLQDIATLADQRR Unmodified 1526.8165 0.81650333 425 O95373 IPO7 Importin-7 yes yes 0 0 0 1 By matching By MS/MS 5.5 0.5 1 1 1 1 48.053 48.217 3 1.1152E-14 13092 20211116_3445_TMUAki_TMT10x_S_F6 168.76 129.33 1823000 3351200 161590 3556000 1587200 1857900 1973600 2920900 3114200 2196500 2411100 1698600 3127800 298430 3587800 1541300 2021300 2017000 2894400 3093300 2175000 2347700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1823000 3351200 161590 3556000 1587200 1857900 1973600 2920900 3114200 2196500 2411100 1698600 3127800 298430 3587800 1541300 2021300 2017000 2894400 3093300 2175000 2347700 1 1 1 1 1 1 1 1 1 1 1 461200000 121990000 339220000 15435 425 14158 80044;80045 96786 96786 1 QLQEERPELSESELTR Unmodified 1942.9596 0.95959833 705 P17480;P17480-2 UBTF Nucleolar transcription factor 1 yes no 0 0 0 1 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 40.821 40.689 3 3.8674E-60 10249 20211116_3428_TMUAki_TMT10x_P_F1 285.19 251.43 4391700 7424000 23934 9586300 7732100 7936500 4908400 8165100 8714500 6754900 7296100 4089200 6935500 416750 9602200 7343300 8192100 5244300 8247900 8648600 6655300 7082200 5 5 3 5 5 5 5 5 5 5 5 2270600 3719300 0 4822300 6353700 6504100 3778900 4055900 4227400 3302300 3595200 2114100 3474600 228990 4866800 6026500 6467200 3981600 4224800 4258600 3256300 3487700 2 2 0 2 2 2 2 2 2 2 2 2121100 3704700 23934 4764000 1378400 1432400 1129500 4109100 4487100 3452600 3700900 1975100 3460800 187760 4735400 1316900 1724900 1262700 4023100 4390000 3399000 3594500 3 3 3 3 3 3 3 3 3 3 3 1274700000 844040000 430630000 15436 705 14159 80046;80047;80048;80049;80050 96787;96788;96789;96790;96791 96787 5 QLQLDEDAELER Unmodified 1457.6998 0.69980182 930 P35251;P35251-2 RFC1 Replication factor C subunit 1 yes no 0 0 0 0 By MS/MS 1 0 1 1 49.621 49.36 2 2.2103E-16 15847 20211116_3439_TMUAki_TMT10x_S_F1 204 143.66 765750 1308700 9906.3 1432500 643270 662830 544630 1197800 1198400 1009200 1132900 713060 1221600 71003 1441100 614920 734740 577840 1185200 1188200 993380 1094900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 765750 1308700 9906.3 1432500 643270 662830 544630 1197800 1198400 1009200 1132900 713060 1221600 71003 1441100 614920 734740 577840 1185200 1188200 993380 1094900 1 1 1 1 1 1 1 1 1 1 1 86406000 0 86406000 15437 930 14160 80051 96792 96792 1 QLQLEAEEQR Unmodified 1242.6204 0.62042929 2188 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 0 0 0 0 By MS/MS 2 0 1 1 36.481 36.58 2 7.3663E-05 8807 20211116_3440_TMUAki_TMT10x_S_F2 128.17 55.099 129370 244430 8859 255840 180480 185270 168060 284170 288980 245450 270870 120530 228120 19698 259140 173280 195310 174860 282770 288050 241310 261860 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 129370 244430 8859 255840 180480 185270 168060 284170 288980 245450 270870 120530 228120 19698 259140 173280 195310 174860 282770 288050 241310 261860 1 1 1 1 1 1 1 1 1 1 1 6596900 0 6596900 15438 2188 14161 80052 96793 96793 1 QLQLEAEEQRK Unmodified 1370.7154 0.7153923 2188 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 0 0 0 1 By MS/MS By MS/MS 2.75 0.829 2 1 1 3 1 35.729 35.496 3 2.3081E-14 8638 20211116_3431_TMUAki_TMT10x_P_F4 145.81 98.035 867530 1442100 24102 1643400 902890 786710 967160 749690 934420 772830 1073200 807930 1346400 94882 1649500 868810 853460 976660 764790 956970 753830 1031000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 867530 1442100 24102 1643400 902890 786710 967160 749690 934420 772830 1073200 807930 1346400 94882 1649500 868810 853460 976660 764790 956970 753830 1031000 1 1 1 1 1 1 1 1 1 1 1 82161000 23487000 58674000 15439 2188 14162 80053;80054;80055;80056 96794;96795;96796 96795 3 QLQLTTVR Unmodified 957.56073 0.56072956 2046 Q75T13;Q75T13-3;Q75T13-4;Q75T13-2 PGAP1 GPI inositol-deacylase yes no 0 0 0 0 By MS/MS By MS/MS 3.12 1.54 2 1 1 2 2 4 4 25.402 25.369 3 0.051398 4368 20211116_3431_TMUAki_TMT10x_P_F4 42.109 11.855 8092600 13119000 35764 11318000 8747000 11223000 9437300 7751200 7808400 7501500 9855600 7535100 12235000 696440 11672000 8405500 11362000 9486100 8048600 8087600 7336700 9443900 10 10 6 10 10 10 10 10 10 10 10 4022300 6579500 21310 5599000 4445100 6586800 4464600 3618300 3716200 3613600 4789200 3745300 6135700 353740 5795900 4263500 6582500 4504400 3828500 3851500 3529400 4586800 6 6 4 6 6 6 6 6 6 6 6 4070200 6539300 14454 5719300 4302000 4636700 4972700 4132900 4092100 3887900 5066400 3789800 6098800 342700 5876400 4141900 4779000 4981700 4220100 4236100 3807200 4857200 4 4 2 4 4 4 4 4 4 4 4 1784100000 1483600000 300490000 15440 2046 14163 80057;80058;80059;80060;80061;80062;80063;80064 96797;96798;96799;96800;96801;96802;96803;96804 96800 8 QLQQAQAAGAEQEVEK Unmodified 1726.8486 0.84859132 978 P39748;P39748-2 FEN1 Flap endonuclease 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 40.006 39.733 3 2.4962E-05 11419 20211116_3429_TMUAki_TMT10x_P_F2 89.636 70.313 2167600 3337100 121950 4068900 3396300 2440200 2676300 3769100 3766200 2675900 3127700 2019200 3116600 310570 4074900 3245800 2616300 2786100 3732400 3761100 2658400 3036900 2 2 2 2 2 2 2 2 2 2 2 533370 713670 5752.5 937930 1711400 1500500 739170 1038900 1268000 731930 904400 496660 666770 66080 949420 1616900 1483500 816980 1070400 1254000 727490 883700 1 1 1 1 1 1 1 1 1 1 1 1634200 2623500 116190 3130900 1684900 939740 1937100 2730200 2498200 1943900 2223300 1522500 2449900 244490 3125500 1628900 1132700 1969100 2662000 2507200 1930900 2153200 1 1 1 1 1 1 1 1 1 1 1 225890000 103840000 122050000 15441 978 14164 80065;80066 96805;96806 96805 2 QLQSFGMDVTLLEAR Oxidation (M) 1722.8611 0.86107026 265 O60341;O60341-2 KDM1A Lysine-specific histone demethylase 1A yes no 0 0 1 0 By MS/MS 5 0 1 1 69.531 69.548 3 7.9278E-05 21548 20211116_3444_TMUAki_TMT10x_S_F5 82.663 67.403 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15442 265 14165 80067 96807 96807 212 1 QLSAFGEYVAEILPK Unmodified 1663.8821 0.88212328 338 O75489;O75489-2 NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes no 0 0 0 0 By MS/MS By matching 8 0 2 1 1 80.046 80.042 3 0.011699 26424 20211116_3436_TMUAki_TMT10x_P_F8 51.193 31.355 4684900 6843800 0 6966200 2961900 5212500 3681200 3622700 3483000 3260300 4982400 4361900 6386400 344840 7071800 2856800 5382600 3690200 3752700 3605200 3199100 4759900 1 1 0 1 1 1 1 1 1 1 1 4684900 6843800 0 6966200 2961900 5212500 3681200 3622700 3483000 3260300 4982400 4361900 6386400 344840 7071800 2856800 5382600 3690200 3752700 3605200 3199100 4759900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1085700000 784940000 300730000 15443 338 14166 80068;80069 96808 96808 1 QLSAQGQMTQLCELINK Unmodified 1960.971 0.97103142 3199 Q9UNS2 COPS3 COP9 signalosome complex subunit 3 yes yes 0 0 0 0 By matching By MS/MS 8 0 2 1 1 74.465 74.409 3 8.5532E-08 23555 20211116_3447_TMUAki_TMT10x_S_F8 110.12 94.18 2990300 5774100 38724 5627900 3906400 3339500 3959100 2491400 1981500 2778600 3979700 2784500 5387300 296840 5717500 3749400 3524100 3951900 2584500 2173300 2701900 3777200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2990300 5774100 38724 5627900 3906400 3339500 3959100 2491400 1981500 2778600 3979700 2784500 5387300 296840 5717500 3749400 3524100 3951900 2584500 2173300 2701900 3777200 1 1 1 1 1 1 1 1 1 1 1 673940000 341280000 332650000 15444 3199 14167 80070;80071 96809 96809 1 QLSEVFIQLPSRK Unmodified 1543.8722 0.8722273 1154 P51532-5;P51532-2;P51532-3;P51532-4;P51532;P51531;P51531-2 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 yes no 0 0 0 1 By MS/MS By MS/MS 2.25 0.433 3 1 1 3 60.637 60.402 3 3.4209E-19 21412 20211116_3441_TMUAki_TMT10x_S_F3 162.37 106.94 4004900 6661200 133440 7026400 3990600 4266200 3963000 4087800 4052300 4206500 4950200 3730000 6217000 456190 7101000 3833700 4512400 4024100 4168700 4150500 4103400 4747500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4004900 6661200 133440 7026400 3990600 4266200 3963000 4087800 4052300 4206500 4950200 3730000 6217000 456190 7101000 3833700 4512400 4024100 4168700 4150500 4103400 4747500 1 1 1 1 1 1 1 1 1 1 1 304880000 0 304880000 15445 1154 14168 80072;80073;80074;80075 96810;96811;96812;96813 96813 4 QLSFISPPTPQPK Unmodified 1438.782 0.78201531 212 O43395;O43395-3 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 60.544 60.291 3 5.2715E-06 18536 20211116_3440_TMUAki_TMT10x_S_F2 97.86 67.032 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15446 212 14169 80076;80077 96814;96815 96815 2 QLSILVHPDKNQDDADR Unmodified 1962.9759 0.9759171 370 O75937 DNAJC8 DnaJ homolog subfamily C member 8 yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 42.299 42.469 4 0.00018784 10531 20211116_3444_TMUAki_TMT10x_S_F5 78.661 67.845 971230 1552900 0 1669900 868000 813430 969860 1005500 1113400 1059100 1397800 904090 1449500 51546 1682500 833050 885810 982890 1014200 1136500 1032200 1339600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 971230 1552900 0 1669900 868000 813430 969860 1005500 1113400 1059100 1397800 904090 1449500 51546 1682500 833050 885810 982890 1014200 1136500 1032200 1339600 1 1 0 1 1 1 1 1 1 1 1 164280000 0 164280000 15447 370 14170 80078;80079 96816 96816 1 QLSPTEAFPVLVGDMDNSGSLNAQVIHQLGPGLR Unmodified 3559.8093 0.80931605 457 O96008;O96008-2 TOMM40 Mitochondrial import receptor subunit TOM40 homolog yes no 0 0 0 0 By MS/MS 8 0 1 1 78.95 78.955 4 0.03608 25986 20211116_3436_TMUAki_TMT10x_P_F8 37.499 26.082 1724200 3102200 0 2549100 1635200 3350300 2013100 1818900 1663700 2000300 2179800 1604900 2892600 85317 2651500 1573700 3329200 2011400 1932100 1726100 1946100 2086800 1 1 0 1 1 1 1 1 1 1 1 1724200 3102200 0 2549100 1635200 3350300 2013100 1818900 1663700 2000300 2179800 1604900 2892600 85317 2651500 1573700 3329200 2011400 1932100 1726100 1946100 2086800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1458500000 1458500000 0 15448 457 14171 80080 96817 96817 1 QLSQSLLPAIVELAEDAK Unmodified 1924.0517 0.051707805 869;870 P30153;P30154;P30154-2;P30154-4;P30154-5;P30154-3 PPP2R1A;PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform no no 0 0 0 0 By MS/MS By MS/MS 4.91 1.98 2 1 2 1 2 2 1 5 6 81.828 81.826 3 1.038E-23 26473 20211116_3434_TMUAki_TMT10x_P_F6 167.99 149.26 26687000 41988000 148140 42822000 26950000 33682000 31491000 18924000 17682000 20553000 28751000 24847000 39182000 1994200 43490000 25946000 34545000 31278000 20034000 18985000 20006000 27392000 14 14 7 14 14 14 14 14 14 14 14 13697000 21653000 35855 21685000 12876000 21693000 14571000 10161000 9174800 10532000 14636000 12753000 20205000 1060800 22121000 12384000 21840000 14524000 10924000 9763600 10271000 13949000 6 6 3 6 6 6 6 6 6 6 6 12990000 20334000 112280 21136000 14075000 11988000 16921000 8762900 8507300 10021000 14116000 12094000 18977000 933360 21369000 13562000 12705000 16754000 9110000 9221900 9735600 13443000 8 8 4 8 8 8 8 8 8 8 8 4088200000 1449900000 2638300000 15449 869;870 14172 80081;80082;80083;80084;80085;80086;80087;80088;80089;80090;80091 96818;96819;96820;96821;96822;96823;96824;96825;96826;96827;96828;96829;96830;96831 96822 14 QLSSEELEQFQK Unmodified 1464.7096 0.70963822 1002 P41252 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 By MS/MS 4 0 1 1 56.292 56.245 3 6.9377E-08 17401 20211116_3442_TMUAki_TMT10x_S_F4 109.16 86.438 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15450 1002 14173 80092 96832 96832 1 QLTAQQHAILVDLGR Unmodified 1661.9213 0.92130275 266 O60343;O60343-2;O60343-3;O60343-4;O60343-5 TBC1D4 TBC1 domain family member 4 yes no 0 0 0 0 By MS/MS 7 0 1 1 51.864 52.367 3 4.9242E-10 16812 20211116_3446_TMUAki_TMT10x_S_F7 134.76 90.139 2253900 3605200 14426 4040700 2269600 2023100 1871400 3214300 2990100 2710900 3210400 2098700 3365600 200530 4061200 2167100 2212200 1953700 3192900 3000800 2668400 3090100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2253900 3605200 14426 4040700 2269600 2023100 1871400 3214300 2990100 2710900 3210400 2098700 3365600 200530 4061200 2167100 2212200 1953700 3192900 3000800 2668400 3090100 1 1 1 1 1 1 1 1 1 1 1 198390000 0 198390000 15451 266 14174 80093 96833 96833 1 QLTEMLPSILNQLGADSLTSLR Oxidation (M) 2415.2679 0.26792495 740 P20290;P20290-2 BTF3 Transcription factor BTF3 yes no 0 0 1 0 By MS/MS 1 0 1 1 80.667 80.667 3 3.2976E-05 26574 20211116_3428_TMUAki_TMT10x_P_F1 73.459 63.5 1700000 2645800 0 2665400 1445900 2445500 1852700 1521500 1487500 1718800 2060800 1582900 2468800 137200 2714500 1396600 2484200 1846700 1599500 1549600 1670500 1970200 1 1 0 1 1 1 1 1 1 1 1 1700000 2645800 0 2665400 1445900 2445500 1852700 1521500 1487500 1718800 2060800 1582900 2468800 137200 2714500 1396600 2484200 1846700 1599500 1549600 1670500 1970200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 548150000 548150000 0 15452 740 14175 80094 96834 96834 849 1 QLTEMLPSILNQLGADSLTSLRR Oxidation (M) 2571.369 0.36903597 740 P20290;P20290-2 BTF3 Transcription factor BTF3 yes no 0 0 1 1 By MS/MS By matching 3 0 2 1 1 78.844 78.766 4 0.0025195 27773 20211116_3430_TMUAki_TMT10x_P_F3 56.769 41.177 9556000 15238000 38025 15204000 9156000 14692000 10607000 8360800 8028900 8271200 10674000 8897700 14219000 804860 15506000 8816800 14857000 10604000 8817500 8374700 8081800 10215000 2 2 1 2 2 2 2 2 2 2 2 9556000 15238000 38025 15204000 9156000 14692000 10607000 8360800 8028900 8271200 10674000 8897700 14219000 804860 15506000 8816800 14857000 10604000 8817500 8374700 8081800 10215000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2287400000 1049900000 1237500000 15453 740 14176 80095;80096 96835;96836 96836 849 2 QLTFEEIAK Unmodified 1077.5706 0.57062555 3195 Q9UNM6;Q9UNM6-2 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 58.657 58.67 2 1.8977E-05 18127 20211116_3433_TMUAki_TMT10x_P_F5 147.12 92.713 4672800 7617800 122930 8137800 4950900 5009600 4365100 6735700 6651400 6390900 6889400 4351800 7110100 505870 8218400 4739900 5335200 4529100 6750900 6675000 6255900 6638500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4672800 7617800 122930 8137800 4950900 5009600 4365100 6735700 6651400 6390900 6889400 4351800 7110100 505870 8218400 4739900 5335200 4529100 6750900 6675000 6255900 6638500 1 1 1 1 1 1 1 1 1 1 1 923900000 0 923900000 15454 3195 14177 80097;80098;80099;80100 96837;96838;96839 96838 3 QLTQPETHFGREPAAAISRPR Unmodified 2361.2302 0.23017473 3142 Q9UJU6;Q9UJU6-2;Q9UJU6-3;Q9UJU6-6;Q9UJU6-5;Q9UJU6-4 DBNL Drebrin-like protein yes no 0 0 0 2 By MS/MS By MS/MS 1 0 4 2 2 33.694 33.699 4;5 1.2517E-82 7412 20211116_3428_TMUAki_TMT10x_P_F1 283.19 241.33 1402600 2347200 8350.4 2418700 2763600 2528400 1821900 2630900 2744500 1718400 2652800 1306000 2190400 139110 2464100 2626400 2571300 1925800 2642400 2748400 1715900 2561900 5 5 3 5 5 5 5 5 5 5 5 863110 1395800 7810.7 1464800 2305900 2120200 1382000 1600100 1728000 1060000 1676300 803700 1302700 98817 1499300 2188300 2107800 1460900 1637000 1741000 1057500 1618600 3 3 2 3 3 3 3 3 3 3 3 539450 951350 539.75 953890 457650 408120 439850 1030700 1016500 658380 976500 502260 887720 40290 964780 438150 463430 464940 1005400 1007400 658350 943230 2 2 1 2 2 2 2 2 2 2 2 340630000 222920000 117710000 15455 3142 14178 80101;80102;80103;80104 96840;96841;96842;96843;96844 96841 5 QLTVQMMQNPQILAALQER Oxidation (M) 2227.1453 0.14530739 1240 P55209;P55209-2 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 0 0 1 0 By MS/MS By MS/MS 4.5 3.5 3 3 4 2 71.696 71.664 3 7.6456E-24 24989 20211116_3439_TMUAki_TMT10x_S_F1 164.02 143.58 21734000 36276000 290910 33904000 24492000 36159000 25851000 22434000 21276000 23281000 27340000 20238000 33840000 2039900 34789000 23531000 36389000 26010000 23527000 22060000 22702000 26186000 9 9 6 9 9 9 9 9 9 9 9 15033000 24903000 272780 24096000 14995000 27977000 17330000 15133000 14294000 16187000 18765000 13999000 23234000 1494100 24697000 14452000 27973000 17363000 16066000 14833000 15765000 17964000 5 5 4 5 5 5 5 5 5 5 5 6701400 11373000 18133 9808200 9497100 8182100 8521300 7301400 6982000 7094100 8574100 6239300 10606000 545780 10092000 9078600 8415900 8646900 7461800 7226800 6937000 8221800 4 4 2 4 4 4 4 4 4 4 4 4104300000 2856400000 1247900000 15456 1240 14179 80105;80106;80107;80108;80109;80110 96845;96846;96847;96848;96849;96850;96851;96852;96853 96850 1681;1682 9 QLTVQMMQNPQILAALQER Unmodified 2211.1504 0.15039277 1240 P55209;P55209-2 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 77.714 77.674 3 0.0046633 26813 20211116_3429_TMUAki_TMT10x_P_F2 54.882 42.717 30342000 49358000 654970 46833000 31286000 47132000 37927000 26137000 29224000 28689000 34348000 28256000 46047000 3139200 47960000 30205000 47525000 37854000 27711000 30293000 27914000 32976000 3 3 3 3 3 3 3 3 3 3 3 20136000 31577000 415730 29093000 17426000 35422000 23808000 16224000 17901000 18383000 21847000 18751000 29455000 2018900 29950000 16894000 35264000 23633000 17529000 18610000 17865000 20953000 2 2 2 2 2 2 2 2 2 2 2 10206000 17781000 239250 17740000 13861000 11710000 14119000 9913700 11323000 10306000 12501000 9504500 16592000 1120300 18010000 13311000 12261000 14221000 10182000 11684000 10050000 12023000 1 1 1 1 1 1 1 1 1 1 1 1484100000 901950000 582130000 15457 1240 14179 80111;80112 96854;96855 96854 2 QLTVQMMQNPQILAALQER 2 Oxidation (M) 2243.1402 0.14022201 1240 P55209;P55209-2 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 0 0 2 0 By MS/MS By MS/MS 6.83 0.687 2 3 1 4 2 62.921 63.253 2;3 9.9422E-24 20679 20211116_3435_TMUAki_TMT10x_P_F7 164.88 147.19 16741000 27913000 146860 25502000 19335000 35349000 21356000 24577000 25324000 22548000 23408000 15588000 26037000 1193900 26334000 18595000 35162000 21679000 25471000 25521000 22105000 22640000 8 8 3 8 8 8 8 8 8 8 8 15502000 25756000 146860 23636000 17805000 33852000 19931000 22547000 23395000 20648000 21559000 14435000 24025000 1099600 24415000 17131000 33602000 20213000 23438000 23584000 20244000 20854000 7 7 3 7 7 7 7 7 7 7 7 1239000 2157800 0 1866400 1530000 1497300 1425100 2030700 1928400 1899700 1848300 1153500 2012400 94279 1919100 1463600 1560100 1466600 2033800 1936900 1860800 1785500 1 1 0 1 1 1 1 1 1 1 1 5318500000 4469500000 849040000 15458 1240 14179 80113;80114;80115;80116;80117;80118 96856;96857;96858;96859;96860;96861;96862;96863 96858 1681;1682 8 QLVAEQVTYQR Unmodified 1333.699 0.69901396 1114 P49736 MCM2 DNA replication licensing factor MCM2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.6 0.8 1 4 2 3 40.138 40.251 2;3 1.5436E-24 9644 20211116_3434_TMUAki_TMT10x_P_F6 256.9 206.27 2165200 3583900 30662 4119100 3424200 2416900 2211600 2667800 2673800 2215900 3046900 2016200 3346100 213790 4138900 3253900 2572800 2321000 2686300 2713200 2182800 2927700 5 5 3 5 5 5 5 5 5 5 5 446650 758690 23715 895560 1242200 1059700 543400 640370 687140 519390 630630 416050 708450 70274 906400 1175000 1060000 592180 668630 690750 512250 610090 1 1 1 1 1 1 1 1 1 1 1 1718600 2825200 6947.9 3223600 2182000 1357200 1668200 2027500 1986700 1696500 2416300 1600100 2637700 143520 3232500 2078900 1512800 1728900 2017700 2022400 1670500 2317600 4 4 2 4 4 4 4 4 4 4 4 351420000 96408000 255020000 15459 1114 14180 80119;80120;80121;80122;80123 96864;96865;96866;96867;96868 96864 5 QLVARPDVVEMHDVTAQDPK Oxidation (M) 2263.1267 0.12668044 1633 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 1 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 39.901 39.969 4 7.8238E-09 9520 20211116_3444_TMUAki_TMT10x_S_F5 106.03 89.146 6969900 10712000 37925 13608000 17122000 15699000 9706600 11779000 12606000 9471300 10797000 6489500 10006000 489650 13709000 16229000 15776000 10323000 12105000 12633000 9345200 10471000 5 5 2 5 5 5 5 5 5 5 5 5189000 7832600 4890.1 10463000 15431000 14263000 8118100 8961000 9987600 7178300 8240000 4831000 7318500 318800 10545000 14609000 14176000 8674700 9325100 10017000 7084200 8002900 3 3 1 3 3 3 3 3 3 3 3 1781000 2879400 33035 3145400 1691100 1436700 1588500 2818300 2618100 2293000 2556700 1658400 2687800 170850 3164500 1620500 1600100 1648500 2780000 2616200 2261100 2468300 2 2 1 2 2 2 2 2 2 2 2 808330000 676250000 132080000 15460 1633 14181 80124;80125;80126 96869;96870;96871;96872;96873 96872 2193 5 QLVHELDEAEYR Unmodified 1500.7209 0.72087161 1527 Q06323;Q06323-2;Q06323-3 PSME1 Proteasome activator complex subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.17 1.07 2 2 1 1 1 5 43.522 43.426 3 2.9988E-09 14419 20211116_3441_TMUAki_TMT10x_S_F3 150.16 132.8 2696600 4707500 56498 5010100 3632900 3735400 2903500 3329100 3278000 2902500 3822700 2511200 4393700 289340 5070700 3468500 3874900 2994900 3392500 3337700 2852300 3670800 3 3 3 3 3 3 3 3 3 3 3 1114100 1807500 16435 1865800 2383800 2554400 1656300 1320100 1227500 1067800 1485200 1037500 1686800 125470 1909600 2268400 2532000 1704800 1396900 1276600 1053200 1424700 1 1 1 1 1 1 1 1 1 1 1 1582500 2899900 40063 3144300 1249100 1181000 1247200 2009000 2050500 1834700 2337600 1473800 2706900 163870 3161100 1200000 1342800 1290000 1995600 2061100 1799100 2246100 2 2 2 2 2 2 2 2 2 2 2 489690000 268450000 221240000 15461 1527 14182 80127;80128;80129;80130;80131;80132 96874;96875;96876;96877;96878 96878 5 QLVHELDEAEYRDIR Unmodified 1884.933 0.93298965 1527 Q06323;Q06323-2;Q06323-3 PSME1 Proteasome activator complex subunit 1 yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 45.347 45.186 4 5.018E-14 13673 20211116_3429_TMUAki_TMT10x_P_F2 144.29 116.88 1283300 2015100 31804 2309800 1907800 2110700 1447300 1949700 2095000 1620700 1895000 1195100 1881400 144780 2332600 1819600 2158900 1512100 1980600 2095900 1596400 1834200 2 2 2 2 2 2 2 2 2 2 2 569030 848230 20543 1029200 1136100 1295400 765170 822240 765730 683720 806140 529970 792160 74264 1041200 1081300 1292700 795560 855740 780410 673470 776400 1 1 1 1 1 1 1 1 1 1 1 714270 1166900 11261 1280600 771680 815270 682090 1127500 1329300 936960 1088900 665140 1089200 70517 1291400 738350 866260 716590 1124900 1315400 922930 1057800 1 1 1 1 1 1 1 1 1 1 1 202010000 136120000 65890000 15462 1527 14183 80133;80134 96879;96880 96879 2 QLWWGHR Unmodified 981.49332 0.4933187 820 P26640 VARS Valine--tRNA ligase yes yes 0 0 0 0 By MS/MS 3 0 1 1 41.519 41.574 3 0.0052058 12579 20211116_3430_TMUAki_TMT10x_P_F3 94.401 74.924 138880 211080 345 278150 421260 309420 233580 110180 130520 117400 179260 129320 197210 15791 279480 399230 308810 243550 122290 139020 114360 171420 1 1 1 1 1 1 1 1 1 1 1 138880 211080 345 278150 421260 309420 233580 110180 130520 117400 179260 129320 197210 15791 279480 399230 308810 243550 122290 139020 114360 171420 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26772000 26772000 0 15463 820 14184 80135 96881 96881 1 QLYHLGVVEAYSGLTK Unmodified 1776.941 0.94103514 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 By MS/MS By MS/MS 4.57 2.87 2 1 1 1 2 4 3 62.906 62.888 3 3.4055E-15 18771 20211116_3447_TMUAki_TMT10x_S_F8 148.03 128.63 47762000 86548000 479800 87370000 64059000 86098000 65603000 63911000 59677000 62786000 61240000 44472000 80761000 4306300 89055000 61470000 87291000 66280000 66066000 61025000 61366000 59028000 9 9 6 9 9 9 9 9 9 9 9 24695000 45008000 230770 44388000 31464000 59397000 37054000 33412000 31715000 32122000 30508000 22995000 41995000 2278100 45552000 30318000 59000000 37128000 35244000 32455000 31425000 29468000 5 5 4 5 5 5 5 5 5 5 5 23067000 41539000 249020 42982000 32596000 26701000 28549000 30499000 27962000 30664000 30732000 21477000 38766000 2028200 43503000 31152000 28291000 29152000 30822000 28570000 29941000 29560000 4 4 2 4 4 4 4 4 4 4 4 7574300000 4195800000 3378500000 15464 1546 14185 80136;80137;80138;80139;80140;80141;80142 96882;96883;96884;96885;96886;96887;96888;96889;96890;96891;96892;96893 96892 12 QLYTVTMDVHSR Oxidation (M) 1464.7031 0.70311306 2769 Q9H0A0;Q9H0A0-2 NAT10 N-acetyltransferase 10 yes no 0 0 1 0 By MS/MS By MS/MS 6 0 2 1 1 35.238 35.312 3 0.029285 7994 20211116_3445_TMUAki_TMT10x_S_F6 45.213 29.322 707060 1058500 9132.3 1038400 952480 1125600 738110 608540 657400 673060 820340 658410 987620 70568 1062100 908450 1129700 757410 646750 678100 654680 786310 2 2 2 2 2 2 2 2 2 2 2 613070 910260 2093.9 879130 887920 1032400 630510 525580 577890 588840 709810 570850 849260 56629 901350 845030 1030900 651390 561850 594890 572480 680640 1 1 1 1 1 1 1 1 1 1 1 93983 148240 7038.3 159290 64568 93166 107600 82960 79506 84220 110540 87560 138370 13939 160730 63419 98761 106020 84900 83215 82202 105670 1 1 1 1 1 1 1 1 1 1 1 4831100 2810500 2020700 15465 2769 14186 80143;80144 96894 96894 2939 1 QLYTVTMDVHSR Unmodified 1448.7082 0.70819844 2769 Q9H0A0;Q9H0A0-2 NAT10 N-acetyltransferase 10 yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 41.51 41.894 3 0.002791 12492 20211116_3446_TMUAki_TMT10x_S_F7 63.185 41.312 1320700 2211200 16565 2434100 1233000 1089500 1143200 1815000 1800900 1575600 1972600 1229800 2064100 123700 2447300 1181000 1209200 1184600 1801600 1809400 1548700 1897600 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1320700 2211200 16565 2434100 1233000 1089500 1143200 1815000 1800900 1575600 1972600 1229800 2064100 123700 2447300 1181000 1209200 1184600 1801600 1809400 1548700 1897600 3 3 3 3 3 3 3 3 3 3 3 76440000 0 76440000 15466 2769 14186 80145;80146 96895;96896;96897 96896 3 QLYVLGHEAMK Oxidation (M) 1303.6595 0.65945733 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 1 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 41.991 42.309 3 0.00023232 10380 20211116_3434_TMUAki_TMT10x_P_F6 85.845 69.591 5712800 9000300 63111 9912500 10844000 9979900 6708800 8502800 8583600 7419400 8384600 5319700 8401700 604310 10049000 10297000 10129000 7079200 8687200 8643200 7290800 8094500 6 6 6 6 6 6 6 6 6 6 6 3175700 4977600 6986.2 5388900 8378000 7808700 4415100 4890400 4893000 4045600 4650700 2956900 4646200 342660 5504700 7934000 7740200 4700500 5094200 4948300 3986000 4493900 2 2 2 2 2 2 2 2 2 2 2 2537100 4022700 56124 4523600 2465800 2171100 2293600 3612500 3690600 3373800 3733900 2362800 3755500 261650 4544300 2363400 2389300 2378800 3593000 3694900 3304900 3600600 4 4 4 4 4 4 4 4 4 4 4 618100000 411740000 206360000 15467 769 14187 80147;80148;80149;80150 96898;96899;96900;96901;96902;96903 96898 895 6 QMADTGKLNTLLQR Oxidation (M) 1603.8352 0.83518986 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 1 1 By MS/MS By MS/MS 3.33 3.3 2 1 1 2 47.198 47.154 3 0.0019479 12487 20211116_3447_TMUAki_TMT10x_S_F8 67.872 56.104 4553300 8764400 73301 6730300 13676000 16133000 7943300 21317000 19279000 14538000 11786000 4239800 8170500 532940 7150300 12971000 15971000 8707900 21209000 18851000 14478000 11602000 3 3 2 3 3 3 3 3 3 3 3 2842700 5114600 13250 4089900 11484000 14131000 6703400 11224000 10351000 7934200 6441600 2646600 4768600 328410 4394900 10890000 13711000 7162500 11460000 10232000 7884500 6335000 2 2 1 2 2 2 2 2 2 2 2 1710600 3649800 60051 2640300 2191600 2001400 1239800 10093000 8928500 6603600 5344900 1593200 3401900 204520 2755300 2081200 2260200 1545400 9749100 8619600 6593100 5266900 1 1 1 1 1 1 1 1 1 1 1 1381500000 748990000 632550000 15468 1474 14188 80151;80152;80153 96904;96905;96906;96907 96907 1995 4 QMADTGKLNTLLQR Unmodified 1587.8403 0.84027524 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 1 By MS/MS 2 0 1 1 53.289 53.038 3 0.019287 16866 20211116_3429_TMUAki_TMT10x_P_F2 51.76 30.511 3157000 5706300 169860 4859800 9126100 10645000 6526700 5571500 4462500 4635700 5313300 2940700 5321400 503640 5104100 8695400 10373000 6692300 5892700 4660400 4566000 5099200 1 1 1 1 1 1 1 1 1 1 1 3157000 5706300 169860 4859800 9126100 10645000 6526700 5571500 4462500 4635700 5313300 2940700 5321400 503640 5104100 8695400 10373000 6692300 5892700 4660400 4566000 5099200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 206230000 206230000 0 15469 1474 14188 80154 96908 96908 1 QMEKDETVSDCSPHIANIGR Oxidation (M) 2302.0318 0.031793774 1063 P47756-2;P47756 CAPZB F-actin-capping protein subunit beta yes no 0 0 1 1 By MS/MS By MS/MS 4.25 0.829 1 1 2 2 2 35.204 35.184 4 7.1794E-13 8532 20211116_3431_TMUAki_TMT10x_P_F4 130.89 120.51 1257700 1921800 16410 2745900 4014900 3537000 1831900 2079300 2574900 1655900 2042200 1171200 1796300 158190 2754900 3795800 3521700 1995300 2174900 2568100 1634700 1986500 4 4 4 4 4 4 4 4 4 4 4 984060 1473100 14294 2147600 3790500 3327800 1639100 1659100 2061700 1322800 1574800 916360 1377100 134210 2160900 3581300 3279900 1788200 1761000 2061600 1305800 1534200 2 2 2 2 2 2 2 2 2 2 2 273690 448680 2116.3 598270 224460 209210 192800 420190 513230 333100 467370 254850 419220 23974 593950 214550 241870 207140 413960 506470 328920 452270 2 2 2 2 2 2 2 2 2 2 2 285670000 232440000 53225000 15470 1063 14189 80155;80156;80157;80158 96909;96910;96911;96912 96909 1383 4 QMEQISQFLQAAER Oxidation (M) 1693.8094 0.80936904 965 P37802;P37802-2 TAGLN2 Transgelin-2 yes no 0 0 1 0 By MS/MS By MS/MS 4.5 0.5 3 3 3 3 62.737 62.742 2;3 7.9744E-24 19654 20211116_3431_TMUAki_TMT10x_P_F4 164.93 148.49 5839900 9888700 189870 9575100 7818100 11950000 7322800 8249900 8003500 8239000 8767000 5438900 9226100 688820 9825800 7495400 11945000 7474800 8574300 8139500 8047100 8433500 3 3 3 3 3 3 3 3 3 3 3 4307300 7132200 137340 7212600 5920600 10035000 5619300 5716100 5351000 5716600 6319200 4011500 6655400 507690 7394600 5677700 9951600 5707400 6029700 5489900 5583100 6066000 2 2 2 2 2 2 2 2 2 2 2 1532600 2756600 52530 2362500 1897500 1915800 1703400 2533800 2652400 2522500 2447700 1427400 2570700 181130 2431300 1817700 1993100 1767400 2544600 2649600 2464000 2367600 1 1 1 1 1 1 1 1 1 1 1 647650000 476790000 170860000 15471 965 14190 80159;80160;80161;80162;80163;80164 96913;96914;96915;96916;96917;96918;96919 96914 1220 7 QMEQISQFLQAAER Unmodified 1677.8145 0.81445442 965 P37802;P37802-2 TAGLN2 Transgelin-2 yes no 0 0 0 0 By MS/MS By MS/MS 5.6 0.663 5 4 1 5 5 75.353 75.328 2;3 4.0773E-37 24217 20211116_3445_TMUAki_TMT10x_S_F6 245.18 212.86 12288000 19563000 340870 19465000 13472000 16630000 13506000 9716500 9187600 9778200 12799000 11444000 18254000 1304900 19822000 12936000 16961000 13565000 10230000 9664000 9547400 12235000 5 5 4 5 5 5 5 5 5 5 5 6406100 10494000 262940 10322000 6870800 11738000 7131700 5628800 5981600 5736800 6890400 5966700 9791300 782670 10564000 6610600 11734000 7184700 6034600 6167800 5598400 6618800 3 3 3 3 3 3 3 3 3 3 3 5882000 9068700 77930 9142900 6601200 4891500 6374800 4087700 3206000 4041400 5908900 5476900 8462400 522200 9258500 6325500 5227300 6380000 4195300 3496100 3949000 5616500 2 2 1 2 2 2 2 2 2 2 2 2492100000 906820000 1585200000 15472 965 14190 80165;80166;80167;80168;80169;80170;80171;80172;80173;80174 96920;96921;96922;96923;96924;96925;96926;96927;96928;96929 96929 10 QMLPLNTNIR Oxidation (M) 1214.6441 0.64414162 153 O14980 XPO1 Exportin-1 yes yes 0 0 1 0 By MS/MS 7.5 0.5 1 1 2 41.369 41.703 2 0.0072725 12323 20211116_3446_TMUAki_TMT10x_S_F7 76.815 58.503 735590 1220800 4156.1 1387700 634060 654190 679840 1276500 1248800 1085500 1200300 684940 1139700 63437 1392900 609370 725670 704810 1260700 1243800 1068000 1159400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 735590 1220800 4156.1 1387700 634060 654190 679840 1276500 1248800 1085500 1200300 684940 1139700 63437 1392900 609370 725670 704810 1260700 1243800 1068000 1159400 2 2 2 2 2 2 2 2 2 2 2 53327000 0 53327000 15473 153 14191 80175;80176 96930;96931 96930 115 2 QMQSSFTSSEQELER Oxidation (M) 1801.7789 0.77885678 2107 Q86UP2;Q86UP2-3;Q86UP2-4;Q86UP2-2 KTN1 Kinectin yes no 0 0 1 0 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 36.402 36.451 3 2.1049E-14 8874 20211116_3428_TMUAki_TMT10x_P_F1 148.82 133.61 253350 439090 8535.5 512780 605570 536920 357130 313270 397710 287620 423080 235960 410000 33893 518280 574920 540460 376500 329030 403730 281960 407340 2 2 2 2 2 2 2 2 2 2 2 136660 226450 8358.3 291350 491880 439200 235400 227740 275150 179670 260850 127310 211550 24095 294850 465690 433550 253420 240780 277670 177450 252080 1 1 1 1 1 1 1 1 1 1 1 116690 212640 177.16 221430 113700 97719 121720 85538 122560 107960 162220 108650 198450 9797.6 223430 109230 106910 123080 88255 126060 104510 155260 1 1 1 1 1 1 1 1 1 1 1 47492000 38750000 8741900 15474 2107 14192 80177;80178 96932;96933 96932 2592 2 QMQVLHPAAR Oxidation (M) 1165.6026 0.60261115 1147 P50991 CCT4 T-complex protein 1 subunit delta yes yes 0 0 1 0 By MS/MS By MS/MS 3 2 2 2 2 2 24.77 24.805 3 0.0036979 4497 20211116_3433_TMUAki_TMT10x_P_F5 67.334 53.127 179180 230270 0 217050 191600 289610 181780 176640 149340 155830 200320 166820 214820 12005 223440 183340 288020 183890 184680 155150 153050 191660 2 2 0 2 2 2 2 2 2 2 2 167600 206770 0 195330 172940 272620 162240 164920 135770 141570 180770 156040 192890 12005 201240 165430 270540 164310 172410 140880 139220 172990 1 1 0 1 1 1 1 1 1 1 1 11574 23502 0 21714 18656 16986 19536 11726 13564 14260 19546 10777 21923 0 22207 17911 17478 19586 12264 14273 13823 18670 1 1 0 1 1 1 1 1 1 1 1 19047000 7280600 11766000 15475 1147 14193 80179;80180;80181;80182 96934;96935;96936 96935 1523 3 QMVEILHK Oxidation (M) 1012.5376 0.53755128 376 O76003 GLRX3 Glutaredoxin-3 yes yes 0 0 1 0 By MS/MS By MS/MS 5 0.707 1 2 1 2 2 36.158 36.281 3 0.0067653 7942 20211116_3444_TMUAki_TMT10x_S_F5 73.985 53.821 1959900 2825800 23857 3137100 2979900 2626800 2098200 1846500 2010200 1676200 2577200 1825100 2637900 199010 3170800 2836600 2690000 2171600 1911700 2069000 1644000 2468600 3 3 3 3 3 3 3 3 3 3 3 1109300 1528100 2033.5 1674900 2154200 1902800 1175500 1023900 1071000 953170 1517200 1032900 1426400 108500 1701700 2041100 1904600 1240300 1083300 1110000 933830 1449800 1 1 1 1 1 1 1 1 1 1 1 850600 1297600 21824 1462300 825690 724030 922630 822570 939180 722990 1060000 792150 1211500 90510 1469100 795470 785350 931310 828380 959020 710210 1018800 2 2 2 2 2 2 2 2 2 2 2 110500000 61597000 48905000 15476 376 14194 80183;80184;80185;80186 96937;96938;96939;96940 96939 291 4 QMVEILHK Unmodified 996.54264 0.54263666 376 O76003 GLRX3 Glutaredoxin-3 yes yes 0 0 0 0 By MS/MS 6 0 1 1 44.718 44.883 3 0.0099895 11740 20211116_3445_TMUAki_TMT10x_S_F6 65.347 24.36 1863700 2778300 5696.4 3183700 1776600 1259200 1797900 2175100 1815200 1701800 2342700 1735300 2593900 157030 3190500 1704300 1422100 1823100 2151100 1864600 1681500 2243600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1863700 2778300 5696.4 3183700 1776600 1259200 1797900 2175100 1815200 1701800 2342700 1735300 2593900 157030 3190500 1704300 1422100 1823100 2151100 1864600 1681500 2243600 2 2 1 2 2 2 2 2 2 2 2 80403000 0 80403000 15477 376 14194 80187 96941;96942 96942 2 QMVETELK Oxidation (M) 992.48485 0.48484701 1342 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 1 0 By MS/MS By MS/MS 3.25 0.829 1 1 2 2 2 36.445 36.365 2 0.012625 8937 20211116_3431_TMUAki_TMT10x_P_F4 85.744 35.704 894170 1313000 8288.4 1377800 1665500 1419600 1077600 720580 828740 693060 1074200 832620 1225400 92660 1401600 1582600 1427900 1116100 767090 862700 678010 1028600 2 2 2 2 2 2 2 2 2 2 2 747120 1096200 7187.7 1107800 1500400 1333400 916610 642100 736130 610780 920540 695690 1022900 79190 1132700 1424400 1329000 954700 686790 763320 597810 882300 1 1 1 1 1 1 1 1 1 1 1 147050 216770 1100.7 269960 165030 86151 161000 78478 92610 82281 153670 136930 202470 13469 268900 158200 98931 161400 80292 99375 80204 146350 1 1 1 1 1 1 1 1 1 1 1 234710000 149970000 84741000 15478 1342 14195 80188;80189;80190;80191 96943;96944 96943 1803 2 QMVETELK Unmodified 976.48993 0.48993238 1342 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 0 0 By MS/MS 3.67 0.471 1 2 3 43.354 43.028 2 0.00080923 14264 20211116_3441_TMUAki_TMT10x_S_F3 133.57 61.026 1171100 1942800 2766.9 2222500 1343500 783890 1350900 901400 835510 684950 1506400 1090400 1813900 102080 2226000 1288500 889950 1353900 904070 896350 677870 1432400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1171100 1942800 2766.9 2222500 1343500 783890 1350900 901400 835510 684950 1506400 1090400 1813900 102080 2226000 1288500 889950 1353900 904070 896350 677870 1432400 1 1 1 1 1 1 1 1 1 1 1 68698000 0 68698000 15479 1342 14195 80192;80193;80194 96945;96946;96947 96945 3 QMVIDVLHPGK Oxidation (M) 1251.6645 0.66454271 1371 P62847;P62847-2;P62847-3;P62847-4 RPS24 40S ribosomal protein S24 yes no 0 0 1 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 45.794 46.043 3 0.001894 14158 20211116_3446_TMUAki_TMT10x_S_F7 72.958 45.216 9219200 14424000 165440 16976000 14940000 14187000 10062000 12875000 13263000 11020000 12988000 8585200 13469000 998650 17097000 14213000 14595000 10560000 13101000 13343000 10839000 12537000 4 4 4 4 4 4 4 4 4 4 4 4946600 6898000 130780 8409700 10500000 10520000 6136000 6416400 6440300 5290300 6436000 4606700 6442200 609770 8504000 9966000 10494000 6461600 6697100 6538400 5213200 6208700 2 2 2 2 2 2 2 2 2 2 2 4272600 7526500 34658 8566500 4440600 3666900 3926000 6458300 6822600 5729800 6551800 3978400 7026900 388880 8592600 4247000 4100600 4098900 6403700 6804400 5626000 6328700 2 2 2 2 2 2 2 2 2 2 2 1198400000 299650000 898800000 15480 1371 14196 80195;80196;80197 96948;96949;96950;96951 96951 1844 4 QMVIDVLHPGK Unmodified 1235.6696 0.66962808 1371 P62847;P62847-2;P62847-3;P62847-4 RPS24 40S ribosomal protein S24 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 53.74 54.058 3 0.0002514 15284 20211116_3447_TMUAki_TMT10x_S_F8 84.605 50.719 22688000 36036000 398540 43559000 31310000 28810000 23628000 19394000 17408000 18666000 26528000 21126000 33654000 2210600 43686000 29842000 30047000 24176000 20172000 18305000 18260000 25308000 6 6 5 6 6 6 6 6 6 6 6 11672000 17540000 71610 20594000 20805000 20440000 14661000 10651000 9928400 10078000 13491000 10867000 16378000 999790 20791000 19788000 20613000 15046000 11306000 10434000 9866500 12904000 3 3 2 3 3 3 3 3 3 3 3 11016000 18496000 326930 22965000 10505000 8369400 8966600 8742400 7479200 8588000 13037000 10259000 17276000 1210800 22894000 10053000 9434800 9129600 8865200 7871100 8393900 12405000 3 3 3 3 3 3 3 3 3 3 3 2368100000 1206700000 1161400000 15481 1371 14196 80198;80199;80200;80201 96952;96953;96954;96955;96956;96957 96956 6 QNEEFRPFIR Unmodified 1334.6731 0.67313356 177 O15258 RER1 Protein RER1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.86 0.99 1 1 3 2 3 4 40.351 40.447 3 2.7763E-09 10984 20211116_3442_TMUAki_TMT10x_S_F4 148.28 116.03 1261900 2312000 10391 1995000 2677400 990840 1423600 2111000 1487400 1416400 2091100 1175000 2156100 134130 2042600 2536300 1096500 1511500 2069000 1531800 1411900 1998500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1261900 2312000 10391 1995000 2677400 990840 1423600 2111000 1487400 1416400 2091100 1175000 2156100 134130 2042600 2536300 1096500 1511500 2069000 1531800 1411900 1998500 1 1 1 1 1 1 1 1 1 1 1 194850000 71559000 123300000 15482 177 14197 80202;80203;80204;80205;80206;80207;80208 96958;96959;96960;96961;96962;96963 96960 6 QNFIDPLQNLCEK Unmodified 1617.7821 0.78209166 2616 Q99961;Q99961-2 SH3GL1 Endophilin-A2 yes no 0 0 0 0 By MS/MS 6 0 1 1 70.49 70.438 3 0.00075988 22048 20211116_3434_TMUAki_TMT10x_P_F6 76.588 62.33 3994600 6536000 9525.4 5773000 4372100 8028800 5025600 4091100 3407100 3945000 4360400 3719400 6095900 345340 5977000 4209200 7951600 5013400 4353900 3570800 3858900 4176800 1 1 1 1 1 1 1 1 1 1 1 3994600 6536000 9525.4 5773000 4372100 8028800 5025600 4091100 3407100 3945000 4360400 3719400 6095900 345340 5977000 4209200 7951600 5013400 4353900 3570800 3858900 4176800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1229900000 1229900000 0 15483 2616 14198 80209 96964 96964 1 QNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGK Oxidation (M) 3373.6613 0.66125483 710 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 yes yes 0 0 1 0 By MS/MS 8 0 1 1 78.895 78.865 4 7.2617E-07 25356 20211116_3447_TMUAki_TMT10x_S_F8 75.343 67.897 3784200 5777100 6315.6 5686300 4211600 3691800 4883800 1833700 2193400 2713800 3827700 3523500 5390300 325610 5777500 4055500 3842200 4835400 1984500 2407100 2614100 3641900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3784200 5777100 6315.6 5686300 4211600 3691800 4883800 1833700 2193400 2713800 3827700 3523500 5390300 325610 5777500 4055500 3842200 4835400 1984500 2407100 2614100 3641900 1 1 1 1 1 1 1 1 1 1 1 1457800000 0 1457800000 15484 710 14199 80210 96965 96965 793 1 QNINLSAPIMSR Oxidation (M) 1358.6976 0.69763375 1716 Q14566 MCM6 DNA replication licensing factor MCM6 yes yes 0 0 1 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 43.106 43.199 2 2.3403E-07 12957 20211116_3446_TMUAki_TMT10x_S_F7 112.93 96.273 827540 1340200 7654.8 1586100 1520500 1393300 840580 1273500 1425900 965510 1268600 770470 1251400 71989 1597800 1440500 1428600 906310 1291700 1419400 955660 1228700 2 2 1 2 2 2 2 2 2 2 2 416400 648090 7654.8 779780 1228800 1152400 617730 605040 691740 497620 668120 387770 605230 53035 791780 1163300 1138700 660830 639570 699650 490430 645240 1 1 1 1 1 1 1 1 1 1 1 411140 692060 0 806340 291730 240910 222850 668500 734190 467890 600520 382710 646200 18954 806070 277120 289910 245470 652100 719790 465230 583440 1 1 0 1 1 1 1 1 1 1 1 190620000 142750000 47872000 15485 1716 14200 80211;80212;80213 96966;96967;96968 96967 2309 3 QNKPTGFALGSIEGR Unmodified 1573.8213 0.82125436 1431 P78406 RAE1 mRNA export factor yes yes 0 0 0 1 By MS/MS By matching 5.67 3.3 1 2 2 1 46.062 46.081 3 0.00010116 12520 20211116_3436_TMUAki_TMT10x_P_F8 85.636 66.058 10169000 14416000 58992 19020000 23796000 24246000 13317000 13728000 13998000 11923000 14033000 9468400 13469000 1088900 19156000 22557000 24142000 14077000 14435000 14212000 11719000 13536000 2 2 2 2 2 2 2 2 2 2 2 10169000 14416000 58992 19020000 23796000 24246000 13317000 13728000 13998000 11923000 14033000 9468400 13469000 1088900 19156000 22557000 24142000 14077000 14435000 14212000 11719000 13536000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 667830000 542450000 125380000 15486 1431 14201 80214;80215;80216 96969;96970 96970 2 QNLEEQLDR Unmodified 1143.552 0.55201537 2332 Q8WZA0;Q8WZA0-2 LZIC Protein LZIC yes no 0 0 0 0 By MS/MS 2 0 1 1 35.49 35.589 2 0.0046932 8387 20211116_3440_TMUAki_TMT10x_S_F2 79.148 51.667 70005 131370 1294.4 162930 70715 57811 73419 86087 98396 77706 122200 65192 122700 7020.3 162410 67952 66013 75104 85849 99853 76237 117150 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 70005 131370 1294.4 162930 70715 57811 73419 86087 98396 77706 122200 65192 122700 7020.3 162410 67952 66013 75104 85849 99853 76237 117150 1 1 1 1 1 1 1 1 1 1 1 2168000 0 2168000 15487 2332 14202 80217 96971 96971 1 QNLEEVYK Unmodified 1021.508 0.50802529 3393 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 4 4 4 4 54.409 54.347 2;3 0.062197 15741 20211116_3428_TMUAki_TMT10x_P_F1 39.148 17.641 + 105130000 138780000 92644 196750000 95617000 74722000 90433000 67402000 65092000 66833000 110690000 97883000 129710000 7726400 194800000 91496000 83484000 91216000 68882000 68947000 65296000 105370000 9 9 6 9 9 9 9 9 9 9 9 15341000 18838000 70754 25438000 22447000 23703000 13659000 10284000 10449000 10023000 14548000 14285000 17603000 1437300 25459000 21306000 23953000 14215000 11126000 10916000 9799900 13907000 4 4 4 4 4 4 4 4 4 4 4 89792000 119940000 21890 171310000 73171000 51019000 76774000 57117000 54643000 56810000 96146000 83598000 112110000 6289000 169340000 70190000 59531000 77002000 57756000 58031000 55496000 91464000 5 5 2 5 5 5 5 5 5 5 5 11757000000 2206700000 9550600000 15488 3393 14203 80218;80219;80220;80221;80222;80223;80224;80225 96972;96973;96974;96975;96976 96972 5 QNLFLGSLTSR Unmodified 1234.667 0.66698555 1890 Q3ZCQ8-2;Q3ZCQ8;Q3ZCQ8-3 TIMM50 Mitochondrial import inner membrane translocase subunit TIM50 yes no 0 0 0 0 By MS/MS 3 0 1 1 60.403 60.137 2 0.041247 20217 20211116_3430_TMUAki_TMT10x_P_F3 62.303 41.432 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15489 1890 14204 80226 96977 96977 1 QNLFQEAEEFLYR Unmodified 1685.8049 0.80493559 3166 Q9UL46 PSME2 Proteasome activator complex subunit 2 yes yes 0 0 0 0 By MS/MS 1 0 1 1 80.461 80.428 2 2.9968E-08 28388 20211116_3439_TMUAki_TMT10x_S_F1 117.79 99.012 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15490 3166 14205 80227 96978 96978 1 QNLLSQSHAYQQFLR Unmodified 1831.9329 0.93293007 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 53.883 53.606 3 5.4079E-10 18629 20211116_3441_TMUAki_TMT10x_S_F3 134.14 117.89 4709900 7102800 75251 8901300 6777600 8081200 5283200 5282200 5289900 5392900 6317100 4385900 6634400 489570 8941500 6465600 8220200 5437300 5515200 5417700 5262400 6062100 2 2 2 2 2 2 2 2 2 2 2 2467800 3746000 16143 4698900 4558900 5647600 3006000 2692000 2848600 2735900 3205400 2297900 3498900 248930 4740600 4333200 5628500 3125500 2887500 2917500 2670200 3081100 1 1 1 1 1 1 1 1 1 1 1 2242100 3356800 59108 4202400 2218600 2433600 2277200 2590200 2441300 2657000 3111700 2088000 3135400 240640 4200900 2132400 2591800 2311800 2627700 2500200 2592200 2981000 1 1 1 1 1 1 1 1 1 1 1 328990000 153300000 175690000 15491 1475 14206 80228;80229 96979;96980 96980 2 QNLLSVGDYR Unmodified 1163.5935 0.59348625 260 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 49.649 49.795 2 2.6419E-07 14569 20211116_3433_TMUAki_TMT10x_P_F5 117.7 72.977 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15492 260 14207 80230;80231 96981;96982 96981 2 QNLSKEELIAELQDCEGLIVR Unmodified 2456.2581 0.25808854 201 O43175 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 1 By MS/MS By MS/MS 4.8 1.51 1 2 4 3 2 3 6 9 77.399 77.38 3;4 3.3231E-44 28151 20211116_3441_TMUAki_TMT10x_S_F3 202.65 192.17 82504000 145230000 326140 120690000 127550000 141970000 125300000 100130000 93786000 103090000 119480000 76815000 135420000 5791800 125170000 122210000 142380000 126240000 104010000 97702000 100560000 114460000 18 18 5 18 18 18 18 18 18 18 18 30753000 51891000 191520 44027000 33528000 66504000 41927000 37285000 34207000 38257000 42573000 28633000 48390000 2048700 45806000 32345000 65707000 41850000 39412000 35434000 37324000 40809000 7 7 2 7 7 7 7 7 7 7 7 51751000 93340000 134620 76659000 94024000 75465000 83372000 62848000 59580000 64832000 76904000 48182000 87034000 3743100 79365000 89866000 76669000 84388000 64595000 62268000 63237000 73651000 11 11 3 11 11 11 11 11 11 11 11 18476000000 8995000000 9480600000 15493 201 14208 80232;80233;80234;80235;80236;80237;80238;80239;80240;80241;80242;80243;80244;80245;80246 96983;96984;96985;96986;96987;96988;96989;96990;96991;96992;96993;96994;96995;96996;96997;96998;96999;97000;97001;97002 96992 20 QNLSQFEAQAR Unmodified 1290.6317 0.63166267 2202 Q8N684;Q8N684-2;Q8N684-3 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 38.175 38.333 2 1.4988E-18 10072 20211116_3442_TMUAki_TMT10x_S_F4 221.91 178.18 210980 297320 0 440710 152590 112380 135450 319470 453090 254080 359720 196400 277970 11802 434560 145570 139390 148120 312410 443730 250840 349900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 210980 297320 0 440710 152590 112380 135450 319470 453090 254080 359720 196400 277970 11802 434560 145570 139390 148120 312410 443730 250840 349900 1 1 0 1 1 1 1 1 1 1 1 21766000 0 21766000 15494 2202 14209 80247;80248 97003;97004 97004 2 QNPFWWTHQR Unmodified 1398.6582 0.6581522 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 49.338 49.417 3 0.0088138 14128 20211116_3431_TMUAki_TMT10x_P_F4 60.943 46.524 4873700 8040900 66755 9155800 7055500 6601500 5872600 4561500 3741300 3923100 6135400 4538400 7507200 496830 9223500 6739500 6836900 5952700 4721600 3984400 3857800 5844400 2 2 2 2 2 2 2 2 2 2 2 2400900 3880300 26924 4240800 4497800 4835800 3727700 2402400 2180000 2165900 2957800 2235700 3622000 253510 4309800 4295000 4835000 3773500 2558300 2313100 2125000 2829200 1 1 1 1 1 1 1 1 1 1 1 2472800 4160600 39831 4915000 2557700 1765700 2144900 2159100 1561400 1757200 3177500 2302700 3885100 243320 4913800 2444500 2001900 2179200 2163300 1671300 1732700 3015200 1 1 1 1 1 1 1 1 1 1 1 393620000 297020000 96600000 15495 1997 14210 80249;80250;80251 97005;97006 97005 2 QNRPIPQWIR Unmodified 1306.7258 0.72583783 1379 P62891;Q59GN2 RPL39;RPL39P5 60S ribosomal protein L39;Putative 60S ribosomal protein L39-like 5 yes no 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 37.857 37.943 3 0.00084868 9840 20211116_3431_TMUAki_TMT10x_P_F4 87.258 56.688 1623800 2571100 16811 3306800 6695400 4904800 2551200 2388600 2275500 1904900 2697000 1512000 2401900 221320 3345400 6316700 4841600 2795900 2541100 2342000 1880300 2588600 2 2 2 2 2 2 2 2 2 2 2 1476500 2310100 15885 3024200 6543000 4803700 2430700 2241400 2142900 1773400 2456700 1374900 2158200 208180 3061400 6171300 4726400 2671700 2394200 2203700 1751200 2360200 1 1 1 1 1 1 1 1 1 1 1 147210 261080 926.01 282550 152340 101120 120520 147200 132630 131500 240270 137080 243690 13140 284020 145330 115240 124280 146870 138210 129080 228450 1 1 1 1 1 1 1 1 1 1 1 123700000 108610000 15091000 15496 1379 14211 80252;80253 97007;97008 97007 2 QNRYDGQVAVFGSDLQEK Unmodified 2052.9865 0.98648179 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 1 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 50.345 50.497 3 9.7909E-41 14015 20211116_3445_TMUAki_TMT10x_S_F6 209.66 180.68 30430000 52196000 702820 57170000 46391000 55866000 36415000 51957000 48575000 43408000 47136000 28337000 48723000 3263200 57952000 44265000 56905000 37835000 52768000 48833000 42747000 45515000 13 13 9 13 13 13 13 13 13 13 13 15230000 25614000 387100 28164000 28758000 41291000 23653000 27383000 24920000 22040000 23459000 14183000 23910000 1779500 28748000 27467000 40943000 24298000 28383000 25245000 21745000 22676000 7 7 4 7 7 7 7 7 7 7 7 15200000 26582000 315720 29006000 17634000 14574000 12762000 24574000 23655000 21369000 23677000 14154000 24813000 1483700 29204000 16798000 15962000 13537000 24385000 23589000 21002000 22839000 6 6 5 6 6 6 6 6 6 6 6 2571900000 1262400000 1309400000 15497 769 14212 80254;80255;80256;80257;80258;80259 97009;97010;97011;97012;97013;97014;97015;97016;97017;97018;97019;97020;97021 97021 13 QNSQLPAQVQNGPSQEELEIQRR Unmodified 2648.3267 0.32665389 2209 Q8N8S7-3;Q8N8S7-2;Q8N8S7 ENAH Protein enabled homolog yes no 0 0 0 1 By MS/MS 4 0 1 1 42.256 42.33 3 2.548E-69 11283 20211116_3431_TMUAki_TMT10x_P_F4 247.92 223.91 933130 1676900 0 1765800 2068800 2295500 1268600 1117700 1243300 1018600 1190400 868720 1565000 78580 1803000 1962600 2279300 1327900 1192900 1264100 998880 1150000 2 2 0 2 2 2 2 2 2 2 2 933130 1676900 0 1765800 2068800 2295500 1268600 1117700 1243300 1018600 1190400 868720 1565000 78580 1803000 1962600 2279300 1327900 1192900 1264100 998880 1150000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 283030000 283030000 0 15498 2209 14213 80260 97022;97023 97022 2 QPAEHLQLLEEAAK Unmodified 1575.8257 0.82567103 912 P33992 MCM5 DNA replication licensing factor MCM5 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 50.429 50.596 3 1.5686E-06 15053 20211116_3442_TMUAki_TMT10x_S_F4 112.17 82.366 24013000 37693000 272430 45519000 31430000 32725000 26227000 20714000 20782000 22246000 28961000 22361000 35201000 2345400 45693000 30022000 33857000 26707000 21712000 21670000 21663000 27685000 6 6 5 6 6 6 6 6 6 6 6 11808000 18276000 135320 21873000 19886000 23974000 14421000 11105000 11463000 12006000 14280000 10996000 17067000 1218200 22092000 18938000 24005000 14822000 11967000 11891000 11689000 13688000 3 3 3 3 3 3 3 3 3 3 3 12205000 19416000 137100 23645000 11544000 8750700 11807000 9608900 9318800 10239000 14681000 11365000 18133000 1127200 23601000 11084000 9852600 11885000 9745200 9779500 9974300 13997000 3 3 2 3 3 3 3 3 3 3 3 1801400000 1182700000 618700000 15499 912 14214 80261;80262;80263;80264 97024;97025;97026;97027;97028;97029 97027 6 QPAENVNQYLTDPK Unmodified 1615.7842 0.78420015 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By MS/MS 4 0 1 1 51.231 51.397 3 0.00012992 14950 20211116_3431_TMUAki_TMT10x_P_F4 80.706 66.448 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15500 769 14215 80265 97030 97030 1 QPAIISQLDPVNER Unmodified 1578.8366 0.83657007 1546 Q08211;Q08211-2 DHX9 ATP-dependent RNA helicase A yes no 0 0 0 0 By MS/MS By MS/MS 4.11 0.737 2 4 3 4 5 58.115 58.137 2;3 4.0147E-33 18162 20211116_3442_TMUAki_TMT10x_S_F4 230.59 193.25 44433000 74334000 183340 80254000 63054000 80575000 52062000 58573000 60130000 56213000 61328000 41369000 69384000 3089600 81459000 60164000 81570000 53634000 60592000 60862000 54998000 59124000 14 14 4 14 14 14 14 14 14 14 14 25459000 42067000 78201 45485000 46406000 63732000 35284000 34465000 35390000 33224000 34785000 23703000 39266000 1563100 46433000 44199000 63143000 36375000 36481000 35977000 32499000 33574000 7 7 2 7 7 7 7 7 7 7 7 18974000 32267000 105140 34769000 16647000 16842000 16779000 24108000 24740000 22989000 26544000 17666000 30118000 1526500 35025000 15965000 18427000 17259000 24111000 24885000 22499000 25550000 7 7 2 7 7 7 7 7 7 7 7 4371900000 2172900000 2199000000 15501 1546 14216 80266;80267;80268;80269;80270;80271;80272;80273;80274 97031;97032;97033;97034;97035;97036;97037;97038;97039;97040;97041;97042;97043;97044;97045 97043 15 QPAIMPGQSYGLEDGSCSYK Oxidation (M) 2202.9562 0.95616921 677 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 1 0 By MS/MS By MS/MS 5.14 0.833 2 2 3 4 3 52.389 52.527 2;3 3.7476E-22 14462 20211116_3434_TMUAki_TMT10x_P_F6 149.32 139 12200000 21695000 157590 25044000 16956000 21617000 12540000 21870000 24085000 19159000 19067000 11360000 20256000 1188200 25261000 16155000 22239000 13308000 22142000 23819000 18823000 18549000 9 9 8 9 9 9 9 9 9 9 9 4572800 8002200 42256 9177600 10916000 15444000 7818000 7937300 8697900 7070700 6967600 4257700 7471300 470570 9373300 10389000 15178000 8119400 8423000 8748700 6941300 6775000 3 3 2 3 3 3 3 3 3 3 3 7627300 13693000 115340 15867000 6039900 6172800 4722000 13932000 15387000 12088000 12099000 7102600 12785000 717610 15888000 5765200 7060700 5188800 13719000 15070000 11882000 11774000 6 6 6 6 6 6 6 6 6 6 6 3625800000 1961300000 1664500000 15502 677 14217 80275;80276;80277;80278;80279;80280;80281 97046;97047;97048;97049;97050;97051;97052;97053;97054;97055;97056 97050 754 11 QPAIMPGQSYGLEDGSCSYK Unmodified 2186.9613 0.96125459 677 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 58.424 58.525 3 2.9773E-05 18111 20211116_3433_TMUAki_TMT10x_P_F5 77.871 71.29 29421000 51489000 1007100 58345000 36547000 42578000 32316000 27315000 24001000 28660000 40716000 27401000 48071000 3429200 58801000 34994000 44005000 32743000 28583000 25374000 27935000 38760000 12 12 11 12 12 12 12 12 12 12 12 13289000 22568000 564040 25107000 20827000 29195000 18376000 13057000 11649000 13472000 17714000 12378000 21068000 1733000 25495000 19943000 29127000 18560000 14102000 12361000 13140000 16900000 6 6 6 6 6 6 6 6 6 6 6 16132000 28921000 443050 33238000 15719000 13383000 13940000 14259000 12351000 15188000 23002000 15023000 27002000 1696200 33306000 15051000 14878000 14183000 14481000 13013000 14795000 21859000 6 6 5 6 6 6 6 6 6 6 6 3032800000 1822000000 1210800000 15503 677 14217 80282;80283;80284;80285 97057;97058;97059;97060;97061;97062;97063;97064;97065;97066;97067;97068 97057 12 QPCPSESDIITEEDK Unmodified 1746.7618 0.76180973 336 O75475;O75475-2;O75475-3 PSIP1 PC4 and SFRS1-interacting protein yes no 0 0 0 0 By MS/MS By matching 1.67 0.943 2 1 2 1 46.79 46.712 3 2.4602E-05 12730 20211116_3428_TMUAki_TMT10x_P_F1 96.673 72.632 1280000 1842400 20543 2705800 4044000 3963800 2112700 1898300 2380200 1682800 2064000 1192000 1722400 163980 2718200 3830200 3914000 2252200 2027900 2398500 1652400 2000900 2 2 2 2 2 2 2 2 2 2 2 1280000 1842400 20543 2705800 4044000 3963800 2112700 1898300 2380200 1682800 2064000 1192000 1722400 163980 2718200 3830200 3914000 2252200 2027900 2398500 1652400 2000900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 503240000 427960000 75284000 15504 336 14218 80286;80287;80288 97069;97070 97069 2 QPLALNVAYR Unmodified 1143.64 0.64004252 1575 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 49.606 49.539 2 6.222E-07 15851 20211116_3439_TMUAki_TMT10x_S_F1 158.07 133.18 7709100 13064000 90545 13717000 12804000 14465000 9059100 11614000 11336000 10428000 11545000 7178300 12193000 753390 13958000 12185000 14626000 9455300 11916000 11440000 10234000 11131000 4 4 2 4 4 4 4 4 4 4 4 4132100 6775100 48713 7071500 9535600 10939000 5890100 6166400 6006500 5489500 6075900 3847700 6323000 454710 7250900 9053900 10798000 6168800 6490100 6107900 5389200 5859100 2 2 1 2 2 2 2 2 2 2 2 3577000 6289200 41832 6645300 3268200 3526200 3169000 5447400 5329700 4938600 5469100 3330600 5869800 298690 6707500 3131600 3827800 3286500 5426300 5332500 4844300 5271500 2 2 1 2 2 2 2 2 2 2 2 776560000 486030000 290530000 15505 1575 14219 80289;80290;80291;80292 97071;97072;97073;97074 97073 4 QPLALNVAYRR Unmodified 1299.7412 0.74115354 1575 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.894 2 1 2 2 3 39.536 39.49 3 5.7866E-16 12925 20211116_3441_TMUAki_TMT10x_S_F3 204.5 159.14 3362100 5549600 52756 6388000 6812600 6195800 4233000 4894500 4754400 3789200 5039900 3130700 5181500 360320 6454700 6469600 6294400 4444700 5009000 4824100 3746200 4852900 7 7 5 7 7 7 7 7 7 7 7 1973500 3279500 45266 3810700 5317600 5028500 3044900 2850600 2805400 2182300 2971800 1837800 3062100 246470 3868200 5044000 4998700 3200000 2988200 2870400 2158900 2861700 3 3 2 3 3 3 3 3 3 3 3 1388600 2270100 7489.9 2577300 1495000 1167200 1188100 2043800 1949000 1606800 2068000 1292900 2119400 113850 2586500 1425600 1295800 1244700 2020700 1953700 1587300 1991300 4 4 3 4 4 4 4 4 4 4 4 400840000 247470000 153370000 15506 1575 14220 80293;80294;80295;80296;80297 97075;97076;97077;97078;97079;97080;97081 97079 7 QPPIDNIIR Unmodified 1064.5978 0.59784335 1172 P52292 KPNA2 Importin subunit alpha-1 yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 46.749 46.913 2 0.0042406 13472 20211116_3442_TMUAki_TMT10x_S_F4 76.572 35.72 1770700 2965900 7198.7 3764500 1610700 1371000 1405700 2049300 2332900 1740100 2487000 1648800 2770500 151270 3748200 1539700 1559500 1465300 2040100 2338200 1712200 2394300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1770700 2965900 7198.7 3764500 1610700 1371000 1405700 2049300 2332900 1740100 2487000 1648800 2770500 151270 3748200 1539700 1559500 1465300 2040100 2338200 1712200 2394300 1 1 1 1 1 1 1 1 1 1 1 88751000 0 88751000 15507 1172 14221 80298;80299 97082;97083 97082 2 QPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGR Unmodified 4173.8531 0.85312321 677 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 36.476 36.543 7 0.037964 8208 20211116_3444_TMUAki_TMT10x_S_F5 25.467 23.801 21429000 32940000 219680 26537000 138670000 69038000 35663000 49292000 50855000 30650000 47602000 19953000 30713000 3517900 28160000 130380000 67266000 42030000 50555000 50956000 30702000 46021000 7 7 5 7 7 7 7 7 7 7 7 15385000 23255000 0 16563000 130760000 62430000 28868000 38558000 39073000 22718000 35856000 14324000 21674000 2785900 18055000 122810000 60234000 34925000 39934000 39190000 22840000 34688000 2 2 0 2 2 2 2 2 2 2 2 6043900 9684900 219680 9974200 7909700 6607800 6795000 10734000 11781000 7932300 11746000 5629100 9038200 731940 10105000 7569500 7031900 7105100 10621000 11766000 7862500 11332000 5 5 5 5 5 5 5 5 5 5 5 534100000 402990000 131110000 15508 677 14222 80300;80301 97084;97085;97086;97087;97088;97089;97090 97088 7 QPPTAAGRPVDASPR Unmodified 1518.7903 0.79028858 3350 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 28.444 28.431 3 1.3513E-14 6096 20211116_3433_TMUAki_TMT10x_P_F5 155.26 120.25 294380 515390 7159.8 498600 795760 660570 390110 300660 353160 293340 446840 274150 480850 38101 512260 753240 654870 415770 323630 364220 286790 428150 2 2 2 2 2 2 2 2 2 2 2 294380 515390 7159.8 498600 795760 660570 390110 300660 353160 293340 446840 274150 480850 38101 512260 753240 654870 415770 323630 364220 286790 428150 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38001000 38001000 0 15509 3350 14223 80302;80303 97091;97092 97092 2 QPTIFQNK Unmodified 974.51853 0.5185304 1348 P62280 RPS11 40S ribosomal protein S11 yes yes 0 0 0 0 By MS/MS By MS/MS 7.8 0.4 1 4 2 3 43.221 43.405 2;3 0.0015213 11467 20211116_3436_TMUAki_TMT10x_P_F8 99.139 80.827 7866400 12404000 57557 14445000 11441000 9227700 7427200 8620800 8332600 7274500 11018000 7324700 11581000 732470 14514000 10871000 9708700 7771600 8755300 8532600 7160100 10545000 6 6 4 6 6 6 6 6 6 6 6 2583400 3808800 16816 4337400 6886300 5631100 3315500 2994900 2860600 2656100 3774500 2405500 3556000 286340 4406900 6513900 5597600 3535700 3167900 2962500 2608000 3612800 2 2 1 2 2 2 2 2 2 2 2 5283000 8594700 40741 10107000 4554700 3596600 4111700 5625900 5471900 4618500 7243300 4919200 8025400 446130 10107000 4357300 4111200 4235900 5587500 5570100 4552100 6932500 4 4 3 4 4 4 4 4 4 4 4 258870000 130590000 128280000 15510 1348 14224 80304;80305;80306;80307;80308 97093;97094;97095;97096;97097;97098 97094 6 QPTPPFFGR Unmodified 1045.5345 0.53451481 2534 Q96PK6 RBM14 RNA-binding protein 14 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 49.203 49.077 2 0.0027202 15709 20211116_3439_TMUAki_TMT10x_S_F1 82.563 72.149 4432400 6894700 62132 8220700 5997800 6441600 4791900 6052000 5563800 5671600 5919500 4127500 6438400 447310 8266200 5724500 6663300 4947600 6161600 5639100 5554900 5699300 2 2 2 2 2 2 2 2 2 2 2 2325900 3517600 11802 4182400 3953500 4863300 3011200 3070400 2963900 2847000 3016300 2165700 3284800 226620 4230000 3767800 4872100 3102200 3205600 3019200 2789700 2908100 1 1 1 1 1 1 1 1 1 1 1 2106600 3377100 50330 4038300 2044400 1578300 1780600 2981600 2599900 2824700 2903100 1961800 3153600 220680 4036200 1956700 1791200 1845300 2955900 2619900 2765200 2791200 1 1 1 1 1 1 1 1 1 1 1 434390000 266960000 167430000 15511 2534 14225 80309;80310 97099;97100 97100 2 QPVSERLDFVCSFLQK Unmodified 1951.9826 0.98258238 1741 Q14980;Q14980-2;Q14980-4;Q14980-3;Q14980-5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 1 By MS/MS 1 0 1 1 73.446 73.446 3 0.00048665 23591 20211116_3428_TMUAki_TMT10x_P_F1 67.605 41.958 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15512 1741 14226 80311 97101 97101 1 QQAAYYAQTSPQGMPQHPPAPQGQ Oxidation (M) 2596.1765 0.17648418 2407 Q96AE4 FUBP1 Far upstream element-binding protein 1 yes yes 0 0 1 0 By MS/MS By MS/MS 5.4 0.49 3 2 3 2 36.65 36.702 3;4 3.9569E-12 8189 20211116_3434_TMUAki_TMT10x_P_F6 119.01 114.9 409190 730090 8613.4 982430 958790 1020500 570210 714210 1067400 572020 765630 381020 682190 36382 984990 909760 1030400 614100 737360 1053400 564520 747920 7 7 3 7 7 7 7 7 7 7 7 157070 319820 3523.3 463960 759100 868280 386640 393960 631360 281320 368930 146270 298970 17902 469180 718690 848950 419230 421120 622280 279390 364010 4 4 2 4 4 4 4 4 4 4 4 252120 410260 5090.1 518470 199690 152250 183570 320250 436030 290700 396710 234750 383230 18479 515810 191070 181470 194860 316240 431140 285130 383900 3 3 1 3 3 3 3 3 3 3 3 488730000 407230000 81497000 15513 2407 14227 80312;80313;80314;80315;80316 97102;97103;97104;97105;97106;97107;97108 97105 2738 7 QQAAYYAQTSPQGMPQHPPAPQGQ Unmodified 2580.1816 0.18156955 2407 Q96AE4 FUBP1 Far upstream element-binding protein 1 yes yes 0 0 0 0 By MS/MS 6 0 1 1 43.168 43.221 3 2.0149E-09 10719 20211116_3434_TMUAki_TMT10x_P_F6 104.63 86.336 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15514 2407 14227 80317 97109 97109 1 QQEGFKGTFPDAR Unmodified 1479.7106 0.71064128 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 1 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 38.72 38.727 3 3.6729E-06 10298 20211116_3433_TMUAki_TMT10x_P_F5 109.07 86.987 2492400 3651600 13779 4162600 11163000 11226000 4633500 7985200 9228900 5141500 5577200 2320700 3409300 324710 4316000 10539000 10928000 5183600 8197200 9058100 5138600 5493200 3 3 2 3 3 3 3 3 3 3 3 2492400 3651600 13779 4162600 11163000 11226000 4633500 7985200 9228900 5141500 5577200 2320700 3409300 324710 4316000 10539000 10928000 5183600 8197200 9058100 5138600 5493200 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 387870000 387870000 0 15515 1779 14228 80318;80319;80320 97110;97111;97112;97113 97110 4 QQGPILTK Unmodified 883.51272 0.51271674 1576 Q12906-7;Q12906-4;Q12906-6 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 36.882 36.87 2 0.0020228 8188 20211116_3434_TMUAki_TMT10x_P_F6 114.64 60.884 247830 444890 3660 400460 432590 504490 326760 230810 276230 240800 329060 230780 414960 26545 413230 412350 501370 335420 248780 285100 234770 315790 1 1 1 1 1 1 1 1 1 1 1 247830 444890 3660 400460 432590 504490 326760 230810 276230 240800 329060 230780 414960 26545 413230 412350 501370 335420 248780 285100 234770 315790 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21657000 21657000 0 15516 1576 14229 80321;80322;80323 97114;97115;97116 97114 3 QQGVLALRPYLQK Unmodified 1512.8776 0.87764703 1254 P56192;P56192-2 MARS Methionine--tRNA ligase, cytoplasmic yes no 0 0 0 1 By MS/MS 3 0 1 1 55.27 54.883 3 2.8933E-08 19129 20211116_3441_TMUAki_TMT10x_S_F3 108.24 87.342 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15517 1254 14230 80324 97117 97117 1 QQHVIETLIGK Unmodified 1264.7139 0.71393574 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 0 By MS/MS By MS/MS 7 0.707 1 2 1 2 2 50.65 50.995 3 1.1225E-06 16213 20211116_3446_TMUAki_TMT10x_S_F7 124.1 99.25 12431000 20249000 52976 23481000 16889000 16035000 11921000 20264000 16551000 14839000 18706000 11575000 18907000 1142400 23615000 16072000 16890000 12495000 20227000 16711000 14716000 17978000 3 3 3 3 3 3 3 3 3 3 3 4075700 5835600 30578 6803700 9109500 9396100 5267100 5818000 4929100 4297500 5797000 3795100 5448900 436900 6911300 8639900 9331800 5533100 6050400 5060100 4259800 5565200 1 1 1 1 1 1 1 1 1 1 1 8355000 14414000 22397 16678000 7779300 6638900 6654100 14446000 11622000 10541000 12909000 7779500 13458000 705500 16704000 7432200 7557900 6962100 14177000 11651000 10456000 12413000 2 2 2 2 2 2 2 2 2 2 2 1884100000 1010600000 873480000 15518 1079 14231 80325;80326;80327;80328 97118;97119;97120;97121 97120 4 QQHVIETLIGKK Unmodified 1392.8089 0.80889876 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 1 By MS/MS 1 0 1 1 47.692 47.692 4 5.5272E-06 13062 20211116_3428_TMUAki_TMT10x_P_F1 106.26 94.996 16167000 23225000 0 26292000 37267000 32737000 19444000 17129000 16905000 16596000 18307000 15050000 21683000 1285100 26702000 35262000 32602000 20576000 18187000 17359000 16231000 17617000 2 2 0 2 2 2 2 2 2 2 2 16167000 23225000 0 26292000 37267000 32737000 19444000 17129000 16905000 16596000 18307000 15050000 21683000 1285100 26702000 35262000 32602000 20576000 18187000 17359000 16231000 17617000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1015700000 1015700000 0 15519 1079 14232 80329 97122;97123 97122 2 QQINEMHLLIQQAR Oxidation (M) 1736.8992 0.8991871 1486 Q01780;Q01780-2 EXOSC10 Exosome component 10 yes no 0 0 1 0 By matching By MS/MS 5 0 2 1 1 37.697 37.764 3 0.010492 8582 20211116_3444_TMUAki_TMT10x_S_F5 54.598 32.725 510790 950490 1455.9 1090500 457630 414730 436990 843200 901320 764950 881470 475600 887430 42960 1092500 438370 473810 458710 833340 895920 750310 850930 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 510790 950490 1455.9 1090500 457630 414730 436990 843200 901320 764950 881470 475600 887430 42960 1092500 438370 473810 458710 833340 895920 750310 850930 1 1 1 1 1 1 1 1 1 1 1 207980000 151230000 56751000 15520 1486 14233 80330;80331 97124 97124 2014 1 QQINEMHLLIQQAR Unmodified 1720.9043 0.90427248 1486 Q01780;Q01780-2 EXOSC10 Exosome component 10 yes no 0 0 0 0 By MS/MS 7 0 1 1 50.864 51.356 3 0.013298 16386 20211116_3446_TMUAki_TMT10x_S_F7 55.841 35.46 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15521 1486 14233 80332 97125 97125 1 QQIQSIQQSIER Unmodified 1456.7634 0.76340513 1245 P55769 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes yes 0 0 0 0 By MS/MS 5 0 1 1 44.112 44.236 3 4.5157E-08 12330 20211116_3433_TMUAki_TMT10x_P_F5 115.05 93.277 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15522 1245 14234 80333 97126 97126 1 QQISLATQMVR Oxidation (M) 1289.6762 0.67617003 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 1 0 By MS/MS By MS/MS 7.14 0.833 2 2 3 6 1 36.356 36.632 2;3 0.00077781 8668 20211116_3436_TMUAki_TMT10x_P_F8 88.392 54.947 1266900 2099500 38334 2241500 2721900 2599200 1599100 1393300 1534900 1271200 1712000 1179800 1959600 147830 2282000 2583100 2598800 1678800 1473800 1570600 1246600 1646100 9 9 4 9 9 9 9 9 9 9 9 1147100 1921800 38334 2030600 2599400 2499200 1497900 1245400 1348600 1141200 1535200 1068300 1793600 141730 2070800 2466400 2488900 1572300 1326400 1385200 1118900 1475100 8 8 4 8 8 8 8 8 8 8 8 119770 177790 0 210900 122480 100040 101260 147860 186240 130000 176890 111490 166020 6099.4 211160 116650 109820 106450 147380 185410 127700 170930 1 1 0 1 1 1 1 1 1 1 1 133060000 116710000 16348000 15523 1079 14235 80334;80335;80336;80337;80338;80339;80340 97127;97128;97129;97130;97131;97132;97133;97134;97135 97133 1406 9 QQISLATQMVR Unmodified 1273.6813 0.6812554 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 0 By MS/MS 8 0 1 1 47.819 47.924 2 1.4682E-17 13287 20211116_3436_TMUAki_TMT10x_P_F8 195.4 147.83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15524 1079 14235 80341 97136 97136 1 QQLILAR Unmodified 840.51814 0.51813647 1076 P48556 PSMD8 26S proteasome non-ATPase regulatory subunit 8 yes yes 0 0 0 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 37.838 38.125 2 0.05793 10630 20211116_3435_TMUAki_TMT10x_P_F7 64.803 2.1448 1593600 2360500 9821.4 2756600 2647700 2535600 1825200 1589900 1658200 1539400 1966800 1483900 2204100 153320 2780900 2518500 2575500 1889200 1662700 1705100 1505500 1887700 3 3 2 3 3 3 3 3 3 3 3 1122300 1674100 9821.4 1921600 2211700 2149400 1346300 1153600 1188100 1116400 1346500 1045100 1563100 117460 1946200 2099500 2153200 1406000 1222000 1221200 1091800 1294000 2 2 2 2 2 2 2 2 2 2 2 471280 686350 0 835030 436010 386250 478900 436330 470100 423020 620290 438780 641000 35863 834650 418970 422290 483250 440700 483960 413690 593720 1 1 0 1 1 1 1 1 1 1 1 101540000 63169000 38373000 15525 1076 14236 80342;80343;80344;80345 97137 97137 1 QQLLIGAYAK Unmodified 1103.6339 0.63389451 2609 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 By MS/MS By MS/MS 3.08 2.87 5 4 3 7 5 55.938 55.819 2;3 5.4288E-10 16672 20211116_3440_TMUAki_TMT10x_S_F2 195.27 154.24 26494000 42142000 151950 43128000 41129000 46141000 29809000 37504000 36428000 33106000 36250000 24668000 39326000 2301000 43973000 39146000 46625000 31033000 38436000 36763000 32515000 34975000 10 10 4 10 10 10 10 10 10 10 10 15520000 23761000 119500 24337000 29842000 35550000 20191000 22215000 21534000 19218000 20411000 14451000 22174000 1524300 24955000 28374000 35224000 21027000 23170000 21808000 18892000 19725000 6 6 3 6 6 6 6 6 6 6 6 10974000 18380000 32448 18791000 11287000 10591000 9617900 15289000 14894000 13889000 15839000 10217000 17152000 776690 19018000 10772000 11401000 10007000 15266000 14955000 13622000 15250000 4 4 1 4 4 4 4 4 4 4 4 3029300000 1785700000 1243600000 15526 2609 14237 80346;80347;80348;80349;80350;80351;80352;80353;80354;80355;80356;80357 97138;97139;97140;97141;97142;97143;97144;97145;97146;97147;97148;97149;97150 97150 13 QQLQQVPGLLHR Unmodified 1415.7997 0.79973106 1688 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 2 1 1 2 42.913 42.814 3 1.84E-07 11122 20211116_3428_TMUAki_TMT10x_P_F1 128.01 107.17 1866600 2756600 9173.5 3162400 3319800 3712100 2370100 3156800 3096200 2460600 3205000 1738100 2573700 178810 3205700 3159600 3735300 2476200 3216800 3122000 2431800 3088400 3 3 2 3 3 3 3 3 3 3 3 1366500 2017100 1892.9 2242700 2925900 3352400 1919400 2340700 2295200 1805100 2380400 1272300 1883000 132050 2288600 2780000 3324000 2011200 2414800 2321600 1785000 2293600 2 2 1 2 2 2 2 2 2 2 2 500190 739500 7280.7 919660 393970 359760 450650 816120 801030 655530 824620 465780 690710 46767 917110 379620 411290 465000 801940 800420 646840 794750 1 1 1 1 1 1 1 1 1 1 1 271260000 173620000 97635000 15527 1688 14238 80358;80359;80360 97151;97152;97153;97154 97151 4 QQLSAEELDAQLDAYNAR Unmodified 2033.9654 0.96541199 2113 Q86V81 ALYREF THO complex subunit 4 yes yes 0 0 0 0 By MS/MS By MS/MS 2.65 1.23 4 4 4 4 1 8 9 62.089 61.914 2;3 3.4876E-295 19233 20211116_3431_TMUAki_TMT10x_P_F4 523.96 451.31 64284000 112960000 557160 102580000 73610000 108460000 74749000 86998000 79807000 82622000 85208000 59853000 105360000 5226400 105470000 70595000 109650000 75918000 89406000 81160000 80873000 82030000 27 27 11 27 27 27 27 27 27 27 27 35754000 61940000 253050 55333000 39853000 77787000 44440000 49281000 45019000 47145000 46646000 33289000 57772000 2806600 57251000 38314000 77218000 44856000 51480000 45832000 46132000 44947000 13 13 5 13 13 13 13 13 13 13 13 28530000 51016000 304110 47251000 33757000 30678000 30308000 37717000 34787000 35477000 38562000 26564000 47589000 2419800 48222000 32280000 32433000 31062000 37926000 35328000 34741000 37083000 14 14 6 14 14 14 14 14 14 14 14 42698000000 23910000000 18788000000 15528 2113 14239 80361;80362;80363;80364;80365;80366;80367;80368;80369;80370;80371;80372;80373;80374;80375;80376;80377 97155;97156;97157;97158;97159;97160;97161;97162;97163;97164;97165;97166;97167;97168;97169;97170;97171;97172;97173;97174;97175;97176;97177;97178;97179;97180;97181 97167 27 QQLSSLITDLQSSISNLSQAK Unmodified 2260.1911 0.19105483 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 81.702 81.674 3 1.8244E-07 29918 20211116_3441_TMUAki_TMT10x_S_F3 90.882 81.094 959030 1265500 0 1668300 995610 798620 1160000 514040 505320 710220 1026300 892770 1182400 56966 1660500 957270 860830 1147700 542880 561200 685550 973870 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 959030 1265500 0 1668300 995610 798620 1160000 514040 505320 710220 1026300 892770 1182400 56966 1660500 957270 860830 1147700 542880 561200 685550 973870 1 1 0 1 1 1 1 1 1 1 1 153750000 0 153750000 15529 1741 14240 80378 97182 97182 1 QQLVASHLEK Unmodified 1151.6299 0.62987176 1647 Q13561;Q13561-3;Q13561-2 DCTN2 Dynactin subunit 2 yes no 0 0 0 0 By MS/MS 5 0 1 1 36.511 36.484 3 0.048485 9297 20211116_3433_TMUAki_TMT10x_P_F5 50.207 32.343 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15530 1647 14241 80379 97183 97183 1 QQNELAELHANLAR Unmodified 1605.8223 0.82231699 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 1 3 41.101 41.083 3 1.5488E-15 13767 20211116_3441_TMUAki_TMT10x_S_F3 160.05 146.38 2098000 3056500 4455.7 3441600 3329800 3567200 2178600 3490300 3593100 2973800 3105100 1953300 2853500 163060 3485700 3162000 3624600 2313800 3537200 3576100 2925600 3010400 5 5 1 5 5 5 5 5 5 5 5 1396100 1925100 0 2317400 2689100 2525400 1586600 1475900 1692800 1458600 1855500 1299600 1797800 101560 2339600 2548600 2536300 1670300 1553100 1723300 1425300 1784900 4 4 0 4 4 4 4 4 4 4 4 701940 1131500 4455.7 1124200 640710 1041800 591980 2014400 1900300 1515100 1249600 653610 1055700 61491 1146200 613390 1088300 643520 1984100 1852900 1500300 1225600 1 1 1 1 1 1 1 1 1 1 1 1002700000 66442000 936250000 15531 1741 14242 80380;80381;80382;80383 97184;97185;97186;97187;97188;97189 97188 6 QQPTQFINPETPGYVGFANLPNQVHR Unmodified 2951.4678 0.46783882 1752 Q15019;Q15019-2;Q15019-3 SEPT2 Septin-2 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 4 4 4 4 65.422 65.388 3;4 3.3852E-49 20295 20211116_3428_TMUAki_TMT10x_P_F1 199.89 185.34 22443000 37674000 257590 33105000 26090000 39402000 27583000 30198000 26292000 28699000 28776000 20896000 35136000 1857600 34189000 25050000 39544000 27860000 31123000 26893000 28091000 27682000 14 14 7 14 14 14 14 14 14 14 14 14010000 23245000 92170 19787000 15097000 28837000 17482000 18964000 16272000 17483000 18123000 13043000 21677000 1059900 20565000 14528000 28597000 17570000 19735000 16672000 17136000 17425000 8 8 4 8 8 8 8 8 8 8 8 8433500 14429000 165420 13318000 10993000 10565000 10101000 11234000 10021000 11216000 10653000 7852900 13459000 797700 13624000 10522000 10948000 10290000 11388000 10220000 10955000 10257000 6 6 3 6 6 6 6 6 6 6 6 7970500000 3512200000 4458300000 15532 1752 14243 80384;80385;80386;80387;80388;80389;80390;80391 97190;97191;97192;97193;97194;97195;97196;97197;97198;97199;97200;97201;97202;97203 97192 14 QQPTQFINPETPGYVGFANLPNQVHRK Unmodified 3079.5628 0.56280183 1752 Q15019;Q15019-2;Q15019-3 SEPT2 Septin-2 yes no 0 0 0 1 By MS/MS By MS/MS 2.14 0.639 1 4 2 4 3 59.121 58.887 4;5 8.2473E-43 19166 20211116_3429_TMUAki_TMT10x_P_F2 197.4 181.46 20686000 35486000 84411 38379000 23395000 27926000 21402000 16777000 18063000 18837000 25087000 19260000 33123000 1597800 38793000 22372000 28844000 21710000 17682000 18772000 18313000 23983000 6 6 2 6 6 6 6 6 6 6 6 10583000 18314000 39243 18250000 15404000 21906000 13345000 10406000 11475000 11329000 13531000 9853300 17088000 860590 18678000 14713000 21832000 13586000 11188000 11829000 11026000 12990000 3 3 1 3 3 3 3 3 3 3 3 10103000 17173000 45168 20129000 7991200 6020800 8056600 6371400 6588400 7508600 11556000 9406300 16035000 737200 20115000 7659400 7011700 8123300 6494400 6943000 7286500 10994000 3 3 1 3 3 3 3 3 3 3 3 4812300000 3119800000 1692400000 15533 1752 14244 80392;80393;80394;80395;80396;80397;80398 97204;97205;97206;97207;97208;97209 97204 6 QQQLLNEENLR Unmodified 1383.7106 0.71064128 2973;1941 Q9NVI7;Q9NVI7-2;Q9NVI7-3;Q5T9A4-2;Q5T9A4;Q5T9A4-3 ATAD3A;ATAD3B ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B no no 0 0 0 0 By MS/MS By MS/MS 3 0 3 2 1 37.518 37.544 2 9.0044E-30 11236 20211116_3430_TMUAki_TMT10x_P_F3 265.55 180.33 252130 319290 1615.8 542500 1111100 714510 373270 364010 465750 272680 406550 234760 298770 33835 540240 1046900 709410 420070 385050 467680 270080 394020 3 3 1 3 3 3 3 3 3 3 3 252130 319290 1615.8 542500 1111100 714510 373270 364010 465750 272680 406550 234760 298770 33835 540240 1046900 709410 420070 385050 467680 270080 394020 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18525000 18525000 0 15534 2973;1941 14245 80399;80400;80401 97210;97211;97212;97213;97214 97212 5 QQQVDIPLR Unmodified 1095.6037 0.60365701 3032 Q9NZI8 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 39.931 40.034 2 6.1719E-06 10754 20211116_3442_TMUAki_TMT10x_S_F4 165.26 92.014 3263100 5142200 43095 6906900 10721000 7461700 4266000 5504500 6209100 4423700 5622300 3038500 4804800 409690 6929800 10120000 7523300 4724900 5663100 6210800 4364900 5441800 3 3 2 3 3 3 3 3 3 3 3 2259100 3495900 37503 4863700 9639400 6500600 3455400 3622700 4095700 2950100 3676600 2103700 3267100 320160 4889700 9089200 6456700 3848200 3808400 4123800 2908900 3559600 2 2 1 2 2 2 2 2 2 2 2 1003900 1646400 5592.1 2043200 1081800 961160 810590 1881900 2113400 1473500 1945700 934790 1537700 89534 2040200 1030800 1066600 876730 1854700 2087100 1456000 1882200 1 1 1 1 1 1 1 1 1 1 1 489440000 385070000 104380000 15535 3032 14246 80402;80403;80404 97215;97216;97217 97217 3 QQREDITQSAQHALR Unmodified 1779.8976 0.8976072 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 1 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 30.062 29.965 3;4 5.9814E-44 6361 20211116_3431_TMUAki_TMT10x_P_F4 269.55 244.23 338390 546280 4568.1 615200 582080 542500 375300 351320 402960 325560 466940 315110 509990 35725 621650 553200 552850 392350 366080 411000 319020 448460 2 2 2 2 2 2 2 2 2 2 2 127570 154820 1945.9 218040 345230 333770 116940 141870 177270 117530 148140 118800 144700 15439 219700 325410 328570 132420 153200 176670 115780 143800 1 1 1 1 1 1 1 1 1 1 1 210810 391450 2622.2 397160 236840 208720 258360 209450 225690 208040 318800 196310 365290 20286 401950 227800 224270 259930 212870 234330 203240 304660 1 1 1 1 1 1 1 1 1 1 1 33748000 28684000 5064400 15536 1576 14247 80405;80406;80407 97218;97219 97218 2 QQSEEDLLLQDFSR Unmodified 1706.8111 0.81114318 3194 Q9UNL2;Q9UNL2-2 SSR3 Translocon-associated protein subunit gamma yes no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 4 2 3 3 67.597 67.452 2;3 3.5597E-134 21115 20211116_3428_TMUAki_TMT10x_P_F1 403.8 342.2 25434000 41570000 15542 38449000 26989000 36469000 26207000 22233000 21553000 21838000 29056000 23678000 38778000 1686000 39415000 25830000 36955000 26479000 23312000 22396000 21344000 27797000 7 7 1 7 7 7 7 7 7 7 7 15238000 24474000 0 21998000 13979000 25267000 15308000 13305000 12771000 13188000 16926000 14185000 22827000 848150 22665000 13411000 25269000 15380000 14128000 13250000 12885000 16199000 4 4 0 4 4 4 4 4 4 4 4 10197000 17096000 15542 16451000 13010000 11203000 10898000 8927900 8782200 8649900 12130000 9493900 15950000 837890 16750000 12419000 11685000 11100000 9183800 9145800 8459400 11597000 3 3 1 3 3 3 3 3 3 3 3 4907700000 3176900000 1730800000 15537 3194 14248 80408;80409;80410;80411;80412;80413 97220;97221;97222;97223;97224;97225;97226;97227 97220 8 QQSHFAMMHGGTGFAGIDSSSPEVK 2 Oxidation (M) 2637.1588 0.1587852 1791 Q15365 PCBP1 Poly(rC)-binding protein 1 yes yes 0 0 2 0 By MS/MS By MS/MS 5.44 0.831 1 4 3 1 7 2 37.122 37.216 3;4;5 8.1813E-13 9036 20211116_3444_TMUAki_TMT10x_S_F5 120.66 107.73 6769600 10992000 45516 12551000 14150000 17988000 9668800 10076000 11625000 9014600 9568300 6303100 10262000 663290 12775000 13455000 17812000 10102000 10613000 11667000 8847900 9293800 13 13 9 13 13 13 13 13 13 13 13 5946300 9559000 31403 10938000 13539000 17354000 9150700 8940000 10285000 7973300 8408800 5536500 8924700 584870 11157000 12871000 17094000 9546500 9485200 10347000 7827000 8169800 10 10 6 10 10 10 10 10 10 10 10 823240 1432900 14113 1612300 610470 634590 518170 1136500 1339100 1041300 1159500 766620 1337700 78426 1617500 583890 718060 555850 1127300 1320000 1020900 1124100 3 3 3 3 3 3 3 3 3 3 3 2596000000 2098700000 497310000 15538 1791 14249 80414;80415;80416;80417;80418;80419;80420;80421;80422 97228;97229;97230;97231;97232;97233;97234;97235;97236;97237;97238;97239;97240 97238 2407;2408 13 QQSHFAMMHGGTGFAGIDSSSPEVK Oxidation (M) 2621.1639 0.16387058 1791 Q15365 PCBP1 Poly(rC)-binding protein 1 yes yes 0 0 1 0 By MS/MS By MS/MS 6.71 1.03 1 2 2 2 3 4 42.98 43.203 4 6.6794E-17 12657 20211116_3435_TMUAki_TMT10x_P_F7 126.27 117.56 11433000 20503000 166210 23993000 15505000 16026000 11346000 10360000 9524500 10504000 15733000 10646000 19145000 923250 24111000 14770000 16690000 11670000 10824000 9989600 10253000 14985000 10 10 5 10 10 10 10 10 10 10 10 4429300 7568200 59618 8931700 9588500 10935000 6678300 3189200 2994100 3724200 6209000 4124300 7067000 273010 9045500 9122600 10842000 6812200 3649500 3321200 3615200 5890100 3 3 1 3 3 3 3 3 3 3 3 7003600 12935000 106590 15062000 5916700 5090700 4667700 7170800 6530400 6779500 9524300 6521700 12078000 650250 15066000 5647300 5847900 4857600 7174100 6668300 6637400 9095100 7 7 4 7 7 7 7 7 7 7 7 2110500000 1333400000 777040000 15539 1791 14249 80423;80424;80425;80426;80427;80428;80429 97241;97242;97243;97244;97245;97246;97247;97248;97249;97250 97243 2407;2408 10 QQSHFAMMHGGTGFAGIDSSSPEVK Unmodified 2605.169 0.16895596 1791 Q15365 PCBP1 Poly(rC)-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 47.292 47.831 4 1.3994E-22 14943 20211116_3446_TMUAki_TMT10x_S_F7 144.56 135.74 5669600 8410400 32879 11253000 6804500 5510000 5738600 3304300 2783000 2904600 5652200 5279100 7858500 505410 11193000 6498900 5917900 5785100 3458900 3062400 2853200 5363700 2 2 1 2 2 2 2 2 2 2 2 3241700 4630600 0 6073700 4844800 4363500 4156300 1841900 1459400 1509900 3089500 3018200 4326200 280040 6068700 4627400 4494100 4168400 1990000 1660500 1488300 2929900 1 1 0 1 1 1 1 1 1 1 1 2427900 3779800 32879 5178800 1959700 1146500 1582300 1462400 1323700 1394700 2562700 2260900 3532200 225370 5124100 1871500 1423800 1616700 1468900 1401900 1364900 2433800 1 1 1 1 1 1 1 1 1 1 1 1249700000 863610000 386090000 15540 1791 14249 80430;80431 97251;97252 97252 2 QQTDIAVNWAGGLHHAK Unmodified 1844.9282 0.92817905 1645 Q13547 HDAC1 Histone deacetylase 1 yes yes 0 0 0 0 By MS/MS By matching 7.33 0.471 2 1 1 2 42.852 43.208 4 1.9409E-11 12675 20211116_3435_TMUAki_TMT10x_P_F7 137.19 121.43 1336700 2073400 23048 2446800 3293400 3447200 2246000 2006300 1527900 1834900 2085800 1244800 1936100 159710 2484700 3132900 3417700 2310800 2107400 1605600 1799200 1994800 1 1 1 1 1 1 1 1 1 1 1 1336700 2073400 23048 2446800 3293400 3447200 2246000 2006300 1527900 1834900 2085800 1244800 1936100 159710 2484700 3132900 3417700 2310800 2107400 1605600 1799200 1994800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 335310000 282510000 52797000 15541 1645 14250 80432;80433;80434 97253 97253 1 QQTDMAVNWAGGLHHAK Oxidation (M) 1878.8795 0.87951429 2362 Q92769;Q92769-3 HDAC2 Histone deacetylase 2 yes no 0 0 1 0 By MS/MS 6.5 0.5 1 1 2 36.297 36.51 4 1.2741E-05 10024 20211116_3435_TMUAki_TMT10x_P_F7 92.211 81.155 324690 500020 4459.7 571210 679870 570830 401850 250310 255060 228370 384600 302350 466840 36050 577690 645170 574340 417610 270010 270500 223950 367000 2 2 2 2 2 2 2 2 2 2 2 324690 500020 4459.7 571210 679870 570830 401850 250310 255060 228370 384600 302350 466840 36050 577690 645170 574340 417610 270010 270500 223950 367000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 46171000 46171000 0 15542 2362 14251 80435;80436 97254;97255 97255 2699 2 QQTQHAVEGDCDIHVLK Unmodified 1976.9374 0.9374231 41 CON__P12763 yes yes 0 0 0 0 By MS/MS By MS/MS 3.55 1.23 1 1 3 3 3 7 4 35.229 35.187 3;4 4.5174E-36 8569 20211116_3431_TMUAki_TMT10x_P_F4 208.13 187.48 + 15615000 25190000 301780 30732000 54236000 36802000 21607000 27254000 47588000 21241000 30170000 14540000 23525000 1986800 31051000 51194000 36903000 24427000 28012000 46657000 20993000 29644000 20 20 10 20 20 20 20 20 20 20 20 9374600 14939000 141900 18735000 46739000 32373000 15618000 16149000 27025000 12390000 17598000 8728900 13954000 1329300 19048000 44035000 31773000 17822000 17125000 26660000 12255000 17268000 14 14 8 14 14 14 14 14 14 14 14 6240000 10250000 159880 11998000 7497300 4429500 5988900 11105000 20562000 8851200 12573000 5811000 9571200 657460 12003000 7158800 5129300 6604800 10887000 19997000 8737400 12376000 6 6 2 6 6 6 6 6 6 6 6 4886900000 4079200000 807670000 15543 41 14252 80437;80438;80439;80440;80441;80442;80443;80444;80445;80446;80447 97256;97257;97258;97259;97260;97261;97262;97263;97264;97265;97266;97267;97268;97269;97270;97271;97272;97273;97274;97275 97267 20 QQTQHAVEGDCDIHVLKQDGQFSVLFTK Unmodified 3227.567 0.56696051 41 CON__P12763 yes yes 0 0 0 1 By MS/MS By MS/MS 6.43 1.05 2 1 3 1 4 3 67.022 67.206 5 1.5984E-06 30639 20211116_3446_TMUAki_TMT10x_S_F7 80.342 69.031 + 28828000 49630000 247000 44892000 47065000 84899000 44531000 83346000 101490000 70749000 50505000 26843000 46292000 1887200 46730000 45077000 83987000 47066000 84442000 98949000 69616000 50299000 10 10 7 10 10 10 10 10 10 10 10 21059000 35815000 110460 31870000 33905000 75931000 36454000 61558000 76286000 52906000 34976000 19608000 33405000 1040300 33451000 32578000 74312000 38077000 63055000 74399000 52027000 35019000 5 5 2 5 5 5 5 5 5 5 5 7768700 13815000 136540 13021000 13160000 8968500 8076800 21788000 25205000 17842000 15530000 7234500 12888000 846840 13279000 12499000 9674600 8988700 21388000 24549000 17588000 15280000 5 5 5 5 5 5 5 5 5 5 5 10384000000 8439600000 1944000000 15544 41 14253 80448;80449;80450;80451;80452;80453;80454 97276;97277;97278;97279;97280;97281;97282;97283;97284;97285 97285 10 QQVAFYGQTLGQAQAHSQEQ Unmodified 2218.0403 0.04030827 2494 Q96I24;Q96I24-2 FUBP3 Far upstream element-binding protein 3 yes no 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 48.831 48.927 3 7.5231E-05 13025 20211116_3434_TMUAki_TMT10x_P_F6 70.094 64.94 838910 1487100 5769.7 1462100 1648000 2239600 1149700 1321000 1332600 1074400 1190400 781150 1387500 86261 1505000 1568000 2212900 1197900 1382100 1342600 1059500 1152700 1 1 1 1 1 1 1 1 1 1 1 838910 1487100 5769.7 1462100 1648000 2239600 1149700 1321000 1332600 1074400 1190400 781150 1387500 86261 1505000 1568000 2212900 1197900 1382100 1342600 1059500 1152700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 397420000 397420000 0 15545 2494 14254 80455;80456 97286;97287 97287 2 QQVPSGESAILDR Unmodified 1398.7103 0.71030693 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.8 0.4 2 8 8 2 37.081 37.012 2;3 2.1565E-44 13280 20211116_3441_TMUAki_TMT10x_S_F3 293.41 228.17 3657400 5499600 32639 8011200 6215400 5388300 3657800 5821700 6875400 4419500 6012500 3405400 5141100 331170 7956100 5894900 5660700 3943600 5855200 6823100 4374000 5826800 18 18 10 18 18 18 18 18 18 18 18 1619000 2419300 32639 3193300 4880300 4101400 2346800 2108300 2463500 1812500 2331300 1507700 2260300 200790 3216600 4617200 4077400 2516500 2235300 2496400 1782300 2253000 14 14 10 14 14 14 14 14 14 14 14 2038400 3080300 0 4817900 1335200 1286900 1311100 3713400 4411900 2607000 3681300 1897700 2880800 130370 4739500 1277700 1583300 1427100 3619900 4326700 2591700 3573800 4 4 0 4 4 4 4 4 4 4 4 325260000 152780000 172480000 15546 586 14255 80457;80458;80459;80460;80461;80462;80463;80464;80465;80466 97288;97289;97290;97291;97292;97293;97294;97295;97296;97297;97298;97299;97300;97301;97302;97303;97304;97305;97306;97307 97307 20 QQVQVVGLQER Unmodified 1282.6993 0.69934831 62 O00139;O00139-2;O00139-1;O00139-5;O00139-4 KIF2A Kinesin-like protein KIF2A yes no 0 0 0 0 By MS/MS 4 0 1 1 36.853 36.985 2 8.54E-08 9597 20211116_3442_TMUAki_TMT10x_S_F4 123.11 78.03 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15547 62 14256 80467 97308 97308 1 QRDLEGAVSR Unmodified 1129.584 0.5839842 2796 Q9H307 PNN Pinin yes yes 0 0 0 1 By matching By MS/MS 2.5 0.5 1 1 1 1 28.496 28.241 3 0.0008568 8403 20211116_3441_TMUAki_TMT10x_S_F3 87.026 61.087 300000 522470 3626.2 438340 331420 301580 395440 233120 252480 227680 359490 279360 487210 28692 451080 319610 314130 393340 240310 266910 222590 343470 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 300000 522470 3626.2 438340 331420 301580 395440 233120 252480 227680 359490 279360 487210 28692 451080 319610 314130 393340 240310 266910 222590 343470 1 1 1 1 1 1 1 1 1 1 1 7030800 1551600 5479200 15548 2796 14257 80468;80469 97309 97309 1 QRDQEFYIPYRPK Unmodified 1738.8791 0.87910359 2279 Q8TDD1;Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 yes no 0 0 0 2 By MS/MS By MS/MS 8 0 2 1 1 42.289 42.419 4 3.7232E-06 10513 20211116_3447_TMUAki_TMT10x_S_F8 113.25 99.289 1812300 2794800 22880 3926400 2977800 2586900 1880600 3171800 3136400 2261100 2949500 1687600 2612100 187900 3905600 2829100 2731100 2003900 3168100 3129100 2245800 2851100 2 2 2 2 2 2 2 2 2 2 2 819550 1229500 11560 1733700 2147700 1928000 1238300 1235100 1170300 882600 1231200 763170 1149200 97321 1736000 2037100 1936600 1301500 1280200 1195700 876520 1185800 1 1 1 1 1 1 1 1 1 1 1 992780 1565300 11320 2192700 830130 658880 642310 1936700 1966100 1378500 1718300 924460 1462900 90580 2169600 791930 794550 702320 1887900 1933500 1369300 1665300 1 1 1 1 1 1 1 1 1 1 1 181860000 88640000 93222000 15549 2279 14258 80470;80471 97310;97311 97311 2 QREEEIEAQEK Unmodified 1387.6579 0.657937 370 O75937 DNAJC8 DnaJ homolog subfamily C member 8 yes yes 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 29.915 29.861 3 6.9718E-07 7903 20211116_3439_TMUAki_TMT10x_S_F1 133.88 89.113 256790 464680 2915.2 368670 528560 513300 344310 295680 337600 302950 383290 239120 433240 27813 385050 502350 509110 358680 311830 345370 295580 368330 2 2 2 2 2 2 2 2 2 2 2 142620 266650 2911.1 225060 374030 372190 188840 164100 190730 173560 232050 132820 248660 17778 234740 354160 365410 201290 177630 195420 169120 222570 1 1 1 1 1 1 1 1 1 1 1 114170 198030 4.0486 143610 154530 141110 155470 131580 146880 129390 151240 106300 184580 10034 150310 148190 143690 157390 134190 149950 126460 145760 1 1 1 1 1 1 1 1 1 1 1 28857000 20718000 8138600 15550 370 14259 80472;80473;80474 97312;97313 97313 2 QREGPFYPTLR Unmodified 1362.7044 0.70443369 3168 Q9ULC4;Q9ULC4-2;Q9ULC4-3 MCTS1 Malignant T-cell-amplified sequence 1 yes no 0 0 0 1 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 36.656 37.067 3 3.9251E-11 8228 20211116_3447_TMUAki_TMT10x_S_F8 163.51 86.444 2113200 3370800 69486 3719300 3454700 3452200 2643500 2593200 2582800 2440500 3042800 1968100 3146600 258750 3765700 3296300 3514100 2722000 2675400 2646500 2389800 2921000 6 6 6 6 6 6 6 6 6 6 6 1000300 1556700 35274 1739400 2251400 2330900 1430400 1225500 1189900 1124700 1426200 931630 1453300 133330 1770400 2140200 2313200 1486400 1298800 1229400 1102600 1368500 3 3 3 3 3 3 3 3 3 3 3 1112900 1814100 34213 1979900 1203300 1121400 1213100 1367700 1392900 1315700 1616600 1036500 1693300 125420 1995300 1156100 1200900 1235600 1376600 1417100 1287200 1552600 3 3 3 3 3 3 3 3 3 3 3 195560000 131780000 63779000 15551 3168 14260 80475;80476;80477;80478 97314;97315;97316;97317;97318;97319;97320 97319 7 QRELEIEER Unmodified 1200.6099 0.6098646 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 30.035 29.981 3 7.4537E-06 7929 20211116_3439_TMUAki_TMT10x_S_F1 158.41 38.315 925380 1505400 2803.3 1423200 1162700 1378800 1026500 767010 812340 808020 1108800 861610 1404400 78637 1457100 1111300 1393600 1041700 811940 846300 787470 1060500 3 3 1 3 3 3 3 3 3 3 3 603980 968420 2803.3 941580 817400 1043800 660760 518710 547370 526170 726160 562370 903540 53716 963990 779870 1045200 674920 554110 568160 513580 694960 2 2 1 2 2 2 2 2 2 2 2 321400 536950 0 481640 345260 335020 365730 248300 264970 281850 382660 299240 500820 24921 493060 331430 348390 366780 257830 278150 273890 365490 1 1 0 1 1 1 1 1 1 1 1 87694000 53677000 34017000 15552 1684 14261 80479;80480;80481 97321;97322;97323 97323 3 QRELEIEERER Unmodified 1485.7536 0.75356872 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 2 By MS/MS By matching 1.8 0.748 2 2 1 4 1 28.249 28.099 3;4 1.318E-18 6848 20211116_3429_TMUAki_TMT10x_P_F2 225.1 156.31 397320 613350 5695.1 574610 544640 715160 428760 436820 447570 386940 488740 369990 572180 40312 591040 519660 713630 441560 456680 455970 379960 470190 5 5 5 5 5 5 5 5 5 5 5 397320 613350 5695.1 574610 544640 715160 428760 436820 447570 386940 488740 369990 572180 40312 591040 519660 713630 441560 456680 455970 379960 470190 5 5 5 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26732000 25311000 1421500 15553 1684 14262 80482;80483;80484;80485;80486 97324;97325;97326;97327;97328 97328 5 QREPGLGFSFEFTEQQK Unmodified 2026.9749 0.97485447 623 P11310;P11310-2 ACADM Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 59.962 60.049 3 1.0982E-15 17570 20211116_3434_TMUAki_TMT10x_P_F6 154.46 129.52 14123000 24437000 229270 22721000 17377000 19088000 16765000 13374000 13334000 14356000 18244000 13151000 22795000 1430100 23246000 16660000 19541000 16931000 13915000 13889000 13980000 17448000 5 5 5 5 5 5 5 5 5 5 5 5731600 9705900 123400 9138100 6028700 9586300 6195500 5023600 5371000 5494200 7242100 5337600 9054500 594360 9369200 5792200 9635700 6250100 5352000 5566500 5346500 6928300 2 2 2 2 2 2 2 2 2 2 2 8391100 14731000 105870 13583000 11348000 9501600 10570000 8350200 7962900 8861900 11002000 7813700 13741000 835760 13877000 10868000 9905500 10681000 8563300 8322800 8633900 10520000 3 3 3 3 3 3 3 3 3 3 3 2118500000 904790000 1213700000 15554 623 14263 80487;80488;80489;80490 97329;97330;97331;97332;97333 97330 5 QRGDQLVPFSTK Unmodified 1374.7256 0.72556306 2668 Q9BTV4 TMEM43 Transmembrane protein 43 yes yes 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 42.309 42.588 3 0.0050373 11152 20211116_3436_TMUAki_TMT10x_P_F8 62.685 41.732 911800 1584500 9830.3 1883400 2168500 2064000 1167900 1239100 1418300 1156100 1429700 849010 1479600 97436 1903000 2054300 2073000 1244800 1298900 1432300 1132500 1378800 2 2 1 2 2 2 2 2 2 2 2 636240 1112500 9830.3 1287400 1913500 1840100 973900 914460 1035900 835860 985670 592470 1038700 79798 1309200 1811700 1819600 1038900 974120 1049300 819590 952400 1 1 1 1 1 1 1 1 1 1 1 275570 472060 0 596020 255000 223920 194040 324600 382390 320190 444000 256540 440950 17638 593720 242650 253330 205840 324820 382960 312890 426410 1 1 0 1 1 1 1 1 1 1 1 165070000 91845000 73222000 15555 2668 14264 80491;80492;80493 97334;97335 97334 2 QRHELLLGAGSGPGAGQQQATPGALLQAGPPR Unmodified 3132.6541 0.65407646 2436 Q96DI7;Q96DI7-2 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 49.811 49.645 4 1.8655E-35 14096 20211116_3440_TMUAki_TMT10x_S_F2 165.37 152.89 10368000 16806000 90713 19920000 19766000 26889000 15023000 27446000 29635000 26454000 20267000 9654500 15694000 539660 20206000 18838000 26976000 15939000 27848000 29177000 25877000 19841000 6 6 4 6 6 6 6 6 6 6 6 4440500 7148100 49296 9088000 14824000 21874000 10245000 16380000 17847000 15576000 10152000 4134900 6677200 201860 9325500 14102000 21372000 10867000 16907000 17550000 15245000 10031000 2 2 1 2 2 2 2 2 2 2 2 5927700 9658100 41417 10832000 4941700 5015600 4777400 11066000 11788000 10878000 10115000 5519600 9016400 337800 10881000 4736700 5604300 5071600 10940000 11626000 10632000 9809300 4 4 3 4 4 4 4 4 4 4 4 2567500000 1426900000 1140600000 15556 2436 14265 80494;80495;80496;80497 97336;97337;97338;97339;97340;97341 97339 6 QRKTEELEEESFPER Unmodified 1905.9068 0.90683448 3252 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 0 2 By MS/MS 2 0 1 1 36.233 36.002 4 1.1716E-09 9903 20211116_3429_TMUAki_TMT10x_P_F2 134.14 120.06 497470 769290 25155 785990 1055400 1138500 630050 692190 700340 504390 740420 463380 717900 72502 805930 1002800 1128000 663500 720670 710820 500350 713010 1 1 1 1 1 1 1 1 1 1 1 497470 769290 25155 785990 1055400 1138500 630050 692190 700340 504390 740420 463380 717900 72502 805930 1002800 1128000 663500 720670 710820 500350 713010 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 63794000 63794000 0 15557 3252 14266 80498 97342 97342 1 QRLEELQLFK Unmodified 1302.7296 0.7295858 2537 Q96PZ0;Q96PZ0-2 PUS7 Pseudouridylate synthase 7 homolog yes no 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 55.115 55.519 3 0.00060019 17525 20211116_3435_TMUAki_TMT10x_P_F7 94.363 62.145 4293400 7166000 73812 7881700 7720400 10185000 6021500 6376700 5608400 5456200 6075200 3998100 6689300 472740 8024500 7364400 10148000 6183900 6648000 5740200 5366800 5846100 1 1 1 1 1 1 1 1 1 1 1 4293400 7166000 73812 7881700 7720400 10185000 6021500 6376700 5608400 5456200 6075200 3998100 6689300 472740 8024500 7364400 10148000 6183900 6648000 5740200 5366800 5846100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 464610000 464610000 0 15558 2537 14267 80499;80500 97343 97343 1 QRLPGPPDAPGAVFVLGGEGLR Unmodified 2202.1909 0.19093567 2472 Q96GD0 PDXP Pyridoxal phosphate phosphatase yes yes 0 0 0 1 By MS/MS 8 0 1 1 66.229 66.142 3 2.8942E-17 20172 20211116_3447_TMUAki_TMT10x_S_F8 129.85 106.98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15559 2472 14268 80501 97344 97344 1 QRNEVVVELR Unmodified 1240.6888 0.68878362 106 O00629 KPNA4 Importin subunit alpha-3 yes yes 0 0 0 1 By MS/MS 3 0 1 1 32.754 32.512 3 1.7403E-09 10022 20211116_3441_TMUAki_TMT10x_S_F3 155.48 112.5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15560 106 14269 80502 97345 97345 1 QRPASLVVADFGCGDCR Unmodified 1906.8778 0.87779973 198 O43159 RRP8 Ribosomal RNA-processing protein 8 yes yes 0 0 0 1 By MS/MS 6 0 1 1 45.236 45.401 3 0.00019895 11923 20211116_3445_TMUAki_TMT10x_S_F6 72.793 62.326 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15561 198 14270 80503 97346 97346 1 QRQEEPPPGPQRPDQSAAAAGPGDPK Unmodified 2680.2954 0.29535376 2623 Q9BQ61 C19orf43 Uncharacterized protein C19orf43 yes yes 0 0 0 2 By MS/MS 4 0 2 2 30.78 30.814 4;5 5.8061E-49 6687 20211116_3431_TMUAki_TMT10x_P_F4 203.82 161.18 500770 672190 0 1073400 2624800 1498900 719940 571090 981180 355170 860680 466150 628730 56807 1073000 2468000 1479900 837950 621010 982480 355770 834000 2 2 0 2 2 2 2 2 2 2 2 500770 672190 0 1073400 2624800 1498900 719940 571090 981180 355170 860680 466150 628730 56807 1073000 2468000 1479900 837950 621010 982480 355770 834000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 215620000 215620000 0 15562 2623 14271 80504;80505 97347;97348 97347 2 QRVEQFAR Unmodified 1032.5465 0.54647648 915 P34897;P34897-3;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 1 By MS/MS 5 0 2 2 27.717 27.645 2;3 0.00072493 5776 20211116_3433_TMUAki_TMT10x_P_F5 123.21 58.497 280480 435830 27239 302730 259150 427310 240920 227240 229240 216910 304500 261350 406180 48341 320100 249670 423130 244970 240830 236400 212270 291410 1 1 1 1 1 1 1 1 1 1 1 280480 435830 27239 302730 259150 427310 240920 227240 229240 216910 304500 261350 406180 48341 320100 249670 423130 244970 240830 236400 212270 291410 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4433500 4433500 0 15563 915 14272 80506;80507 97349;97350 97349 2 QRVESHFDLELR Unmodified 1527.7794 0.77938954 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 1 By MS/MS By MS/MS 3.6 1.02 2 2 4 2 5 5 37.729 37.743 3;4 6.1875E-09 9460 20211116_3431_TMUAki_TMT10x_P_F4 147.96 120.28 13979000 21631000 205340 22739000 20593000 23160000 15487000 14893000 14348000 13764000 17582000 13017000 20189000 1420200 23125000 19628000 23382000 15941000 15526000 14761000 13489000 16861000 11 11 10 11 11 11 11 11 11 11 11 11051000 17153000 141280 17994000 17568000 20592000 12457000 11778000 11323000 10817000 13720000 10290000 16009000 1116300 18336000 16724000 20620000 12867000 12391000 11654000 10604000 13161000 5 5 4 5 5 5 5 5 5 5 5 2928400 4478200 64054 4744800 3025000 2567300 3030700 3115200 3025300 2947200 3862400 2727100 4179600 303830 4789100 2904500 2762000 3073700 3134700 3107700 2885300 3700000 6 6 6 6 6 6 6 6 6 6 6 926230000 671240000 254980000 15564 1997 14273 80508;80509;80510;80511;80512;80513;80514;80515;80516;80517 97351;97352;97353;97354;97355;97356;97357;97358;97359;97360;97361 97353 11 QRYEILTPNAIPK Unmodified 1541.8566 0.85657723 935;2078 P35580;P35580-2;P35580-5;P35580-3;P35580-4;Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-5;Q7Z406-4 MYH10;MYH14 Myosin-10;Myosin-14 no no 0 0 0 1 By MS/MS By MS/MS 6.5 2.5 1 2 3 3 3 49.212 49.367 3;4 5.9313E-12 13312 20211116_3447_TMUAki_TMT10x_S_F8 154.23 123.02 12798000 22975000 60474 24076000 20630000 23735000 15239000 20237000 19310000 18460000 19266000 11916000 21442000 1175900 24478000 19646000 24122000 15865000 20698000 19465000 18102000 18586000 7 7 5 7 7 7 7 7 7 7 7 7518900 13151000 30376 13821000 14865000 18722000 10987000 11361000 10985000 10645000 10991000 7000700 12274000 717590 14126000 14155000 18605000 11347000 11901000 11175000 10426000 10603000 4 4 3 4 4 4 4 4 4 4 4 5278900 9823700 30097 10254000 5765900 5012800 4251900 8875200 8325300 7815300 8274200 4915300 9168200 458320 10352000 5491400 5516900 4518200 8797000 8289500 7676500 7983400 3 3 2 3 3 3 3 3 3 3 3 2024800000 1162200000 862540000 15565 935;2078 14274 80518;80519;80520;80521;80522;80523 97362;97363;97364;97365;97366;97367;97368 97368 7 QRYEILTPNSIPK Unmodified 1557.8515 0.85149185 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 48.34 48.345 3 1.6111E-14 13440 20211116_3436_TMUAki_TMT10x_P_F8 162.72 135.99 9599600 15629000 109640 17616000 16876000 19618000 11636000 20063000 16862000 14928000 15596000 8939000 14591000 997810 17861000 16057000 19872000 12239000 20222000 16881000 14791000 15084000 4 4 3 4 4 4 4 4 4 4 4 5357100 7905800 67552 9140800 12917000 15856000 8296200 11118000 9487600 8176900 8425100 4988500 7381500 612980 9338300 12273000 15633000 8693700 11455000 9562200 8107200 8160300 2 2 2 2 2 2 2 2 2 2 2 4242500 7723500 42089 8475200 3959500 3761400 3339700 8945100 7374700 6750800 7171000 3950500 7209600 384830 8522500 3783400 4239100 3544900 8767500 7318700 6683500 6923900 2 2 1 2 2 2 2 2 2 2 2 1709800000 1086300000 623410000 15566 934 14275 80524;80525 97369;97370;97371;97372 97370 4 QSDDEVYAPGLDIESSLK Unmodified 1964.9215 0.92148149 1810 Q15459;Q15459-2 SF3A1 Splicing factor 3A subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.62 0.992 1 3 2 2 3 5 70.191 69.976 3 2.0021E-08 22449 20211116_3440_TMUAki_TMT10x_S_F2 106.16 95.688 21906000 37374000 236160 33182000 26753000 25391000 23587000 19706000 19622000 21191000 28054000 20398000 34859000 1969800 34030000 25578000 26220000 23968000 20367000 20434000 20635000 26802000 7 7 4 7 7 7 7 7 7 7 7 5023700 7865500 0 7799200 5040900 8412800 5660600 4462500 4661200 4847200 6090800 4676900 7339100 331380 7970300 4843500 8443800 5678500 4748100 4836500 4718200 5831300 2 2 0 2 2 2 2 2 2 2 2 16883000 29509000 236160 25382000 21712000 16979000 17926000 15243000 14960000 16344000 21964000 15721000 27519000 1638500 26060000 20735000 17776000 18289000 15619000 15598000 15917000 20971000 5 5 4 5 5 5 5 5 5 5 5 3162700000 1876700000 1286100000 15567 1810 14276 80526;80527;80528;80529;80530;80531;80532;80533 97373;97374;97375;97376;97377;97378;97379;97380;97381;97382;97383 97378 11 QSEQQRETLAQLQQEFQR Unmodified 2246.104 0.10397116 173 O15212 PFDN6 Prefoldin subunit 6 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.816 2 2 2 2 4 52.391 52.537 3 1.8599E-40 14511 20211116_3444_TMUAki_TMT10x_S_F5 201.48 183.11 12580000 22620000 255000 24027000 18418000 20860000 13177000 19252000 18985000 17365000 18215000 11715000 21113000 1335600 24365000 17542000 21410000 13820000 19599000 19033000 17038000 17596000 6 6 5 6 6 6 6 6 6 6 6 5041600 8979300 15475 9632200 8456300 13327000 6740400 7944400 7314800 6810500 6716800 4694200 8381100 453450 9835500 8064300 13228000 6944600 8315000 7395200 6698200 6498000 2 2 1 2 2 2 2 2 2 2 2 7538600 13641000 239530 14395000 9962100 7532700 6436200 11307000 11671000 10555000 11499000 7021000 12732000 882180 14530000 9478000 8182000 6874900 11284000 11638000 10339000 11098000 4 4 4 4 4 4 4 4 4 4 4 1751000000 541050000 1209900000 15568 173 14277 80534;80535;80536;80537;80538;80539 97384;97385;97386;97387;97388;97389;97390;97391 97389 8 QSGEAFVELGSEDDVK Unmodified 1708.7792 0.77917435 1181 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 1.82 0.716 4 5 2 5 6 57.431 57.212 2;3 3.3974E-45 17268 20211116_3440_TMUAki_TMT10x_S_F2 212.69 187.9 35448000 58513000 346120 62378000 43346000 49595000 37047000 44994000 44752000 40445000 47102000 33006000 54614000 3193500 63172000 41413000 51209000 38146000 45843000 45274000 39689000 45365000 12 12 8 12 12 12 12 12 12 12 12 15436000 23492000 154170 25886000 23462000 32605000 20065000 17926000 18278000 16680000 19412000 14373000 21929000 1495800 26339000 22418000 32471000 20475000 18929000 18714000 16342000 18691000 5 5 3 5 5 5 5 5 5 5 5 20012000 35022000 191940 36492000 19884000 16990000 16982000 27069000 26474000 23765000 27690000 18633000 32684000 1697700 36833000 18995000 18738000 17671000 26914000 26561000 23346000 26674000 7 7 5 7 7 7 7 7 7 7 7 7784400000 4925000000 2859300000 15569 1181 14278 80540;80541;80542;80543;80544;80545;80546;80547;80548;80549;80550 97392;97393;97394;97395;97396;97397;97398;97399;97400;97401;97402;97403;97404 97403 13 QSGESIDIITR Unmodified 1217.6252 0.62518031 1847 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.943 2 1 2 1 42.557 42.503 2 4.8574E-07 11133 20211116_3440_TMUAki_TMT10x_S_F2 109.39 81.376 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15570 1847 14279 80551;80552;80553 97405;97406;97407 97407 3 QSGYGGQTKPIFR Unmodified 1437.7365 0.7364621 1450 Q969Q0;P83881 RPL36AL;RPL36A 60S ribosomal protein L36a-like;60S ribosomal protein L36a yes no 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 36.844 36.729 3 3.0778E-12 10204 20211116_3429_TMUAki_TMT10x_P_F2 157.23 116.02 510230 726710 853.3 1105400 2450200 1396200 756210 688710 972740 534170 843590 475080 679510 70267 1105300 2306800 1388500 862340 731310 975540 528060 817780 1 1 1 1 1 1 1 1 1 1 1 510230 726710 853.3 1105400 2450200 1396200 756210 688710 972740 534170 843590 475080 679510 70267 1105300 2306800 1388500 862340 731310 975540 528060 817780 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 53538000 53538000 0 15571 1450 14280 80554;80555 97408 97408 1 QSKPVTTPEEIAQVATISANGDK Unmodified 2383.2231 0.22308324 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 7 0.707 1 2 1 1 3 59.093 59.408 4 4.0656E-11 19669 20211116_3446_TMUAki_TMT10x_S_F7 113.08 104.23 18036000 29590000 202700 34687000 21879000 25032000 18772000 21284000 20514000 20713000 23856000 16795000 27629000 1702600 34882000 20910000 26013000 19258000 21812000 20912000 20253000 22910000 6 6 3 6 6 6 6 6 6 6 6 7957900 12174000 147720 14785000 11766000 16053000 10170000 9041000 8751000 8406100 10436000 7410700 11370000 850770 14917000 11251000 16118000 10356000 9527200 9024600 8236000 10015000 2 2 2 2 2 2 2 2 2 2 2 10078000 17415000 54977 19903000 10113000 8979700 8601800 12242000 11763000 12307000 13420000 9384100 16260000 851810 19965000 9659700 9895000 8902000 12285000 11887000 12017000 12895000 4 4 1 4 4 4 4 4 4 4 4 3500200000 1263800000 2236400000 15572 613 14281 80556;80557;80558;80559 97409;97410;97411;97412;97413;97414 97413 6 QSKPVTTPEEIAQVATISANGDKEIGNIISDAMK Oxidation (M) 3570.8087 0.80870693 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 1 2 By MS/MS 8 0 1 1 77.036 77.045 4 0.0020187 25193 20211116_3436_TMUAki_TMT10x_P_F8 47.241 42.316 2499100 4613100 0 2369800 2585000 6741100 3023900 4191600 4466500 4310600 3804700 2326600 4296200 179950 2641400 2487800 6540500 3089000 4394000 4457300 4205100 3690700 1 1 0 1 1 1 1 1 1 1 1 2499100 4613100 0 2369800 2585000 6741100 3023900 4191600 4466500 4310600 3804700 2326600 4296200 179950 2641400 2487800 6540500 3089000 4394000 4457300 4205100 3690700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1010900000 1010900000 0 15573 613 14282 80560 97415 97415 603 1 QSLEYLEQVR Unmodified 1263.6459 0.64591575 2735 Q9BZE4;Q9BZE4-3;Q9BZE4-2 GTPBP4 Nucleolar GTP-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 52.151 52.025 2 4.4296E-07 17982 20211116_3441_TMUAki_TMT10x_S_F3 111.73 39.256 1913700 3084800 13075 3955000 3996500 4585200 2897700 2564300 2768400 2291300 2763800 1782000 2881700 200020 3982700 3805200 4586800 2992700 2701000 2821900 2249000 2666300 1 1 1 1 1 1 1 1 1 1 1 1913700 3084800 13075 3955000 3996500 4585200 2897700 2564300 2768400 2291300 2763800 1782000 2881700 200020 3982700 3805200 4586800 2992700 2701000 2821900 2249000 2666300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 114270000 114270000 0 15574 2735 14283 80561;80562;80563;80564 97416;97417;97418;97419 97418 4 QSLGELIGTLNAAK Unmodified 1413.7827 0.78274359 1271 P60174;P60174-1 TPI1 Triosephosphate isomerase yes no 0 0 0 0 By MS/MS By MS/MS 4.76 2.98 5 2 2 4 4 8 9 76.123 76.125 2;3 8.3206E-85 24601 20211116_3428_TMUAki_TMT10x_P_F1 345.43 282.04 121230000 196530000 769100 205490000 139360000 162220000 139280000 102910000 94252000 110570000 135330000 112880000 183410000 10320000 208360000 133620000 166600000 139890000 107860000 99314000 107670000 129280000 17 17 8 17 17 17 17 17 17 17 17 65057000 104200000 616810 110480000 73820000 112670000 79304000 56722000 49746000 59489000 72582000 60577000 97257000 5746800 112300000 70935000 113390000 79240000 60578000 52712000 57986000 69311000 8 8 4 8 8 8 8 8 8 8 8 56172000 92324000 152290 95013000 65539000 49549000 59975000 46189000 44506000 51078000 62751000 52300000 86158000 4573100 96059000 62688000 53206000 60647000 47278000 46601000 49684000 59969000 9 9 4 9 9 9 9 9 9 9 9 23422000000 12904000000 10518000000 15575 1271 14284 80565;80566;80567;80568;80569;80570;80571;80572;80573;80574;80575;80576;80577;80578;80579;80580;80581 97420;97421;97422;97423;97424;97425;97426;97427;97428;97429;97430;97431;97432;97433;97434;97435;97436;97437 97421 18 QSLPPGLAVK Unmodified 1008.5968 0.59678072 1401 P63173 RPL38 60S ribosomal protein L38 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 4 2 2 49.818 49.812 2;3 4.4783E-06 13396 20211116_3447_TMUAki_TMT10x_S_F8 142.43 126.54 5384600 8468700 20270 9787900 7546900 6884200 5257100 6838700 7083600 5972000 7297600 5013500 7907100 467770 9848700 7178200 7191200 5508800 6929400 7134100 5868300 7033100 3 3 1 3 3 3 3 3 3 3 3 1810500 2885700 20270 3210000 4474800 4334400 2316400 2465100 2558800 2080200 2565600 1685900 2693900 206310 3268600 4237600 4304200 2470000 2589200 2592800 2047500 2474800 1 1 1 1 1 1 1 1 1 1 1 3574100 5583000 0 6577900 3072100 2549800 2940700 4373600 4524800 3891800 4732000 3327600 5213200 261460 6580100 2940600 2887000 3038800 4340300 4541200 3820800 4558400 2 2 0 2 2 2 2 2 2 2 2 811800000 463120000 348680000 15576 1401 14285 80582;80583;80584;80585 97438;97439;97440 97439 3 QSPCIAVQVVR Unmodified 1255.6707 0.67069072 1690 Q14181 POLA2 DNA polymerase alpha subunit B yes yes 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 41.666 42 2 5.8522E-08 12483 20211116_3446_TMUAki_TMT10x_S_F7 144.77 111.93 706780 1142500 2646.7 1293400 616160 579560 599110 707280 661080 680440 893230 658080 1066600 56981 1298200 590350 637320 610520 711860 678060 665660 854480 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 706780 1142500 2646.7 1293400 616160 579560 599110 707280 661080 680440 893230 658080 1066600 56981 1298200 590350 637320 610520 711860 678060 665660 854480 2 2 1 2 2 2 2 2 2 2 2 70387000 0 70387000 15577 1690 14286 80586;80587 97441;97442 97441 2 QSPLGFEVHDEITVTR Unmodified 1826.9163 0.91627696 423 O95347;O95347-2 SMC2 Structural maintenance of chromosomes protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.25 0.829 1 1 2 2 2 52.349 52.255 3 1.9685E-05 15318 20211116_3431_TMUAki_TMT10x_P_F4 92.31 72.987 6192200 10398000 20790 11066000 7639300 9031000 6290400 7927300 8491200 7260700 8438300 5765200 9705000 495190 11211000 7288500 9300900 6519300 8095600 8540200 7118700 8141800 3 3 1 3 3 3 3 3 3 3 3 2801700 4561600 0 4754300 4453500 6028600 3663800 3590000 3631000 3127100 3675500 2608200 4257200 204330 4855600 4247000 6008100 3756600 3759200 3696900 3073200 3544300 1 1 0 1 1 1 1 1 1 1 1 3390500 5836400 20790 6311500 3185800 3002400 2626600 4337300 4860300 4133600 4762800 3157000 5447800 290860 6355800 3041500 3292700 2762700 4336400 4843300 4045500 4597500 2 2 1 2 2 2 2 2 2 2 2 1008400000 643770000 364600000 15578 423 14287 80588;80589;80590;80591 97443;97444;97445 97443 3 QSQQEAEEEEREEEEEAQIIQR Unmodified 2716.206 0.20598921 2914 Q9NQZ2 UTP3 Something about silencing protein 10 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 3 2 1 44.986 44.913 3;4 1.285E-144 11960 20211116_3428_TMUAki_TMT10x_P_F1 383.97 334.33 3012200 5032000 16228 6252800 4552000 6322000 3779300 4029900 4481800 4094600 4487600 2804600 4700000 266910 6293700 4345000 6384700 3895600 4215000 4528900 3996300 4328800 3 3 1 3 3 3 3 3 3 3 3 1917100 3196000 16228 3765200 3823400 5467100 3097100 2572500 3033300 2686500 2839700 1785100 2984300 193640 3826400 3648300 5399500 3177500 2765100 3081800 2619000 2745300 2 2 1 2 2 2 2 2 2 2 2 1095100 1836100 0 2487600 728640 854950 682180 1457400 1448500 1408100 1647900 1019500 1715700 73275 2467300 696680 985210 718120 1449900 1447100 1377300 1583500 1 1 0 1 1 1 1 1 1 1 1 693400000 531170000 162230000 15579 2914 14288 80592;80593;80594 97446;97447;97448 97446 3 QSQQEAEEEEREEEEEAQIIQRR Unmodified 2872.3071 0.30710024 2914 Q9NQZ2 UTP3 Something about silencing protein 10 yes yes 0 0 0 2 By MS/MS By matching 1 0 2 1 1 41.537 41.455 4 1.2181E-27 10537 20211116_3428_TMUAki_TMT10x_P_F1 168.75 155.56 622960 921990 0 1088500 1155200 1569100 711450 889450 1047800 749360 798220 579900 860930 42171 1105900 1095400 1553600 755270 934440 1042400 737630 777740 1 1 0 1 1 1 1 1 1 1 1 622960 921990 0 1088500 1155200 1569100 711450 889450 1047800 749360 798220 579900 860930 42171 1105900 1095400 1553600 755270 934440 1042400 737630 777740 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 533200000 449910000 83293000 15580 2914 14289 80595;80596 97449 97449 1 QSSFALLGDLTK Unmodified 1278.682 0.68196691 2381;134 Q92973;Q92973-2;Q92973-3;O14787-2;O14787 TNPO1;TNPO2 Transportin-1;Transportin-2 no no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 4 4 4 4 72.97 73.086 2;3 1.9465E-12 24830 20211116_3435_TMUAki_TMT10x_P_F7 177.83 158.05 53357000 88095000 909090 84252000 62829000 81408000 63897000 59456000 49472000 59907000 67914000 49687000 82187000 5380900 86179000 60324000 82615000 64311000 61572000 51615000 58490000 64943000 11 11 10 11 11 11 11 11 11 11 11 23925000 37763000 255200 35557000 26747000 48568000 29479000 26194000 21791000 26929000 28431000 22279000 35229000 2238300 36624000 25729000 48173000 29521000 27783000 22741000 26270000 27221000 5 5 4 5 5 5 5 5 5 5 5 29432000 50331000 653890 48695000 36082000 32839000 34418000 33263000 27680000 32978000 39483000 27409000 46958000 3142600 49555000 34595000 34442000 34790000 33789000 28873000 32220000 37722000 6 6 6 6 6 6 6 6 6 6 6 3596800000 2113300000 1483500000 15581 2381;134 14290 80597;80598;80599;80600;80601;80602;80603;80604 97450;97451;97452;97453;97454;97455;97456;97457;97458;97459;97460;97461 97450 12 QSSSSRDDNMFQIGK Oxidation (M) 1714.7581 0.75806175 1215 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes yes 0 0 1 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.019 35.073 3 1.7343E-05 8478 20211116_3431_TMUAki_TMT10x_P_F4 99.927 87.094 1821200 2612700 47100 4277300 7877100 4227800 2789100 2342600 2821900 1706100 2976500 1696100 2444200 278840 4245200 7427900 4267700 3096100 2457800 2874800 1692500 2866500 4 4 3 4 4 4 4 4 4 4 4 1522800 2186800 47100 3564700 7647300 4026700 2557200 1957700 2343700 1442200 2490600 1418200 2045700 255920 3546200 7207500 4027200 2853400 2079400 2398900 1429800 2398000 3 3 3 3 3 3 3 3 3 3 3 298390 425900 0 712540 229830 201050 231890 384890 478130 263950 485890 277830 398480 22915 699020 220370 240500 242730 378430 475920 262770 468480 1 1 0 1 1 1 1 1 1 1 1 162040000 134030000 28002000 15582 1215 14291 80605;80606;80607 97462;97463;97464;97465 97462 1629 4 QSSSSRDDNMFQIGK Unmodified 1698.7631 0.76314713 1215 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes yes 0 0 0 1 By MS/MS 5 0 1 1 42.253 42.332 3 0.0093616 11583 20211116_3433_TMUAki_TMT10x_P_F5 59.705 43.356 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15583 1215 14291 80608 97466 97466 1 QSTLYSFFPK Unmodified 1216.6128 0.61282471 1183 P52701;P52701-3;P52701-2 MSH6 DNA mismatch repair protein Msh6 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 69.631 69.276 3 2.1987E-05 23952 20211116_3430_TMUAki_TMT10x_P_F3 100.55 65.666 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15584 1183 14292 80609;80610 97467;97468 97467 2 QSVDGKAPLATGEDDDDEVPDLVENFDEASKNEAN Unmodified 3732.6398 0.6398465 740 P20290;P20290-2 BTF3 Transcription factor BTF3 yes no 0 0 0 2 By matching By MS/MS 1 0 2 1 1 74.784 74.738 4 5.527E-11 26159 20211116_3439_TMUAki_TMT10x_S_F1 95.099 90.144 1365200 2769400 0 2442000 2744400 1451400 1459000 1600100 1490600 1312100 1941000 1270700 2582900 84654 2499500 2596100 1543000 1548100 1610800 1531000 1293400 1858500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1365200 2769400 0 2442000 2744400 1451400 1459000 1600100 1490600 1312100 1941000 1270700 2582900 84654 2499500 2596100 1543000 1548100 1610800 1531000 1293400 1858500 1 1 0 1 1 1 1 1 1 1 1 1779200000 1165000000 614150000 15585 740 14293 80611;80612 97469 97469 1 QTAAQVTLK Unmodified 958.54475 0.54474515 3051 Q9P0M6 H2AFY2 Core histone macro-H2A.2 yes yes 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 35.193 35.396 2 0.00078181 7575 20211116_3434_TMUAki_TMT10x_P_F6 112.13 42.531 267160 415530 0 376160 373480 524210 317830 247240 262060 233450 307150 248740 387580 21929 388740 356600 518670 323570 264940 270640 228560 294900 2 2 0 2 2 2 2 2 2 2 2 267160 415530 0 376160 373480 524210 317830 247240 262060 233450 307150 248740 387580 21929 388740 356600 518670 323570 264940 270640 228560 294900 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13816000 13816000 0 15586 3051 14294 80613;80614 97470;97471 97470 2 QTALVELLK Unmodified 1013.6121 0.61209643 38 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 66.464 66.771 2 0.00024102 22075 20211116_3435_TMUAki_TMT10x_P_F7 132.78 81.901 + 39450000 58934000 188110 62657000 57232000 76423000 46194000 59700000 57192000 53027000 51034000 36731000 55006000 3418200 63864000 54593000 76630000 47774000 61343000 57483000 52064000 49421000 3 3 2 3 3 3 3 3 3 3 3 35157000 52214000 147270 56600000 51461000 72672000 42389000 48252000 46929000 43764000 43925000 32734000 48737000 3003600 57672000 49106000 72493000 43612000 50158000 47437000 42927000 42466000 2 2 1 2 2 2 2 2 2 2 2 4292800 6720500 40839 6057800 5771400 3751500 3804900 11448000 10263000 9263100 7109300 3997300 6268500 414670 6192300 5486900 4137000 4162200 11185000 10046000 9136800 6955700 1 1 1 1 1 1 1 1 1 1 1 2470200000 1665400000 804760000 15587 38 14295 80615;80616;80617 97472;97473 97472 2 QTASVTLQAIAAQNAAVQAVNAHSNILK Unmodified 2831.5254 0.52535369 1872 Q16891;Q16891-2;Q16891-4;Q16891-3 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 By MS/MS By MS/MS 3.6 0.49 2 3 2 3 74.216 74.097 3;4 2.353E-33 24167 20211116_3431_TMUAki_TMT10x_P_F4 169.91 155.89 18949000 30755000 86683 30640000 21273000 24661000 21394000 16644000 17053000 17293000 22636000 17643000 28698000 1532000 31177000 20396000 25312000 21560000 17346000 17736000 16863000 21663000 6 6 2 6 6 6 6 6 6 6 6 7812100 12324000 0 12356000 7750400 13091000 8184000 6770100 7015800 7245300 8649300 7273100 11500000 549630 12614000 7436000 13149000 8242600 7216600 7246400 7056600 8293100 2 2 0 2 2 2 2 2 2 2 2 11137000 18431000 86683 18284000 13523000 11571000 13210000 9873600 10037000 10048000 13987000 10370000 17198000 982400 18563000 12960000 12164000 13317000 10130000 10490000 9806400 13370000 4 4 2 4 4 4 4 4 4 4 4 4770300000 1980000000 2790300000 15588 1872 14296 80618;80619;80620;80621;80622 97474;97475;97476;97477;97478;97479 97475 6 QTATQLLK Unmodified 901.52328 0.52328142 1358 P62424 RPL7A 60S ribosomal protein L7a yes yes 0 0 0 0 By MS/MS 7 0 1 1 39.986 40.618 2 0.00048532 11920 20211116_3446_TMUAki_TMT10x_S_F7 176.44 59.541 420930 736030 0 665600 358960 385990 489610 344670 429580 336740 512010 391900 686530 30603 679820 347250 409540 487940 352280 442580 329210 491370 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 420930 736030 0 665600 358960 385990 489610 344670 429580 336740 512010 391900 686530 30603 679820 347250 409540 487940 352280 442580 329210 491370 1 1 0 1 1 1 1 1 1 1 1 50303000 0 50303000 15589 1358 14297 80623 97480 97480 1 QTDVGITHFR Unmodified 1172.5938 0.5938206 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 33.529 33.574 3 1.3244E-06 7951 20211116_3431_TMUAki_TMT10x_P_F4 146.16 64.244 1195200 1891400 18105 2075500 2886500 2350700 1600300 1601900 1588700 1270300 1771000 1112900 1765500 139650 2108500 2736500 2360900 1690200 1656600 1623200 1254300 1702700 3 3 3 3 3 3 3 3 3 3 3 1016200 1601200 16158 1754500 2694200 2213400 1387500 1420700 1422400 1106000 1541800 946350 1494700 122810 1785900 2551400 2208700 1476800 1475000 1449700 1093200 1483600 2 2 2 2 2 2 2 2 2 2 2 178900 290150 1947.1 320980 192310 137300 212880 181260 166280 164290 229200 166590 270850 16835 322520 185030 152190 213420 181570 173440 161150 219150 1 1 1 1 1 1 1 1 1 1 1 152770000 135600000 17168000 15590 1997 14298 80624;80625;80626 97481;97482;97483 97481 3 QTELFAHFIQPAAQK Unmodified 1727.8995 0.89950468 260 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 60.135 60.11 3 1.038E-07 20205 20211116_3439_TMUAki_TMT10x_S_F1 120.3 99.84 32943000 53168000 278530 52044000 40134000 59699000 39174000 43266000 42196000 42876000 43921000 30675000 49607000 3061100 53288000 38473000 59976000 39879000 44807000 42856000 41891000 42315000 6 6 4 6 6 6 6 6 6 6 6 18989000 29382000 134850 28821000 27507000 44895000 25339000 24529000 23667000 25472000 25111000 17682000 27415000 1793600 29682000 26327000 44287000 25764000 25995000 24201000 24838000 24179000 3 3 2 3 3 3 3 3 3 3 3 13953000 23786000 143670 23223000 12627000 14804000 13834000 18737000 18529000 17405000 18810000 12993000 22193000 1267600 23605000 12146000 15689000 14115000 18812000 18655000 17053000 18137000 3 3 2 3 3 3 3 3 3 3 3 4732000000 2901100000 1830900000 15591 260 14299 80627;80628;80629;80630 97484;97485;97486;97487;97488;97489 97487 6 QTESLESLLSK Unmodified 1233.6452 0.64524705 1536 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 0 By MS/MS 4 0 1 1 65.394 65.488 2 5.0398E-06 20730 20211116_3431_TMUAki_TMT10x_P_F4 120.57 94.456 2827000 4481500 27992 4415700 3816300 6283300 3695900 3187200 3104000 3284700 3847400 2632400 4181500 274320 4537300 3657900 6216200 3736900 3399700 3210000 3204000 3688500 1 1 1 1 1 1 1 1 1 1 1 2827000 4481500 27992 4415700 3816300 6283300 3695900 3187200 3104000 3284700 3847400 2632400 4181500 274320 4537300 3657900 6216200 3736900 3399700 3210000 3204000 3688500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 62174000 62174000 0 15592 1536 14300 80631 97490 97490 1 QTFDLADAQTVLALSECAVTLK Unmodified 2393.2148 0.21482674 223 O43592 XPOT Exportin-T yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 81.554 81.577 3 1.5583E-05 28926 20211116_3446_TMUAki_TMT10x_S_F7 78.428 66.641 1241400 1962900 10003 1940100 1530000 1877000 1551800 1116400 1331300 1268200 1623100 1155900 1831500 104260 1979900 1467400 1899000 1566100 1178000 1374400 1232300 1556700 2 2 1 2 2 2 2 2 2 2 2 625220 846910 0 1016300 720280 1201300 688520 619460 753710 655730 788510 582050 790890 41143 1027600 689060 1199300 702080 660270 765160 638930 759570 1 1 0 1 1 1 1 1 1 1 1 616230 1116000 10003 923820 809700 675720 863280 496900 577570 612480 834600 573840 1040600 63122 952310 778330 699660 864010 517700 609200 593420 797160 1 1 1 1 1 1 1 1 1 1 1 249970000 110410000 139560000 15593 223 14301 80632;80633 97491;97492 97492 2 QTFEAAILTQLHPR Unmodified 1623.8733 0.87328993 2888 Q9NPD3 EXOSC4 Exosome complex component RRP41 yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 63.66 63.87 3 2.7824E-14 19748 20211116_3436_TMUAki_TMT10x_P_F8 153.21 137.32 5434800 9751900 0 10231000 5860700 8402000 6099900 6420100 5932800 6221100 6861600 5060100 9101400 424250 10376000 5623400 8627700 6169700 6621600 6075900 6084100 6590400 2 2 0 2 2 2 2 2 2 2 2 2958800 5208700 0 5339200 3062800 5754700 3594700 3419100 3176200 3400200 3399800 2754900 4860800 239290 5443900 2949700 5784300 3605500 3593600 3257500 3321600 3272700 1 1 0 1 1 1 1 1 1 1 1 2476000 4543200 0 4892000 2797900 2647300 2505200 3001000 2756600 2820900 3461800 2305200 4240600 184960 4932500 2673800 2843300 2564200 3028000 2818400 2762500 3317700 1 1 0 1 1 1 1 1 1 1 1 2117900000 929690000 1188200000 15594 2888 14302 80634;80635;80636 97493;97494 97493 2 QTFSPFGQIMEIR Oxidation (M) 1568.7657 0.76571331 1476;888 Q01085;Q01085-2;P31483;P31483-2 TIAL1;TIA1 Nucleolysin TIAR;Nucleolysin TIA-1 isoform p40 no no 0 0 1 0 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 64.166 64.582 2 0.00050531 20070 20211116_3436_TMUAki_TMT10x_P_F8 87.568 69.256 12083000 18931000 160930 17460000 13068000 19780000 14448000 17936000 17881000 18153000 15696000 11252000 17659000 1142000 17950000 12573000 19966000 14689000 18336000 17963000 17720000 15209000 4 4 3 4 4 4 4 4 4 4 4 6017000 8945400 124710 8437600 5596400 12080000 6607300 8964500 8852300 9108500 7729800 5603300 8345100 609180 8698000 5399100 12012000 6718700 9276000 8867600 8889900 7491400 2 2 2 2 2 2 2 2 2 2 2 6066100 9985900 36220 9022200 7471300 7699600 7840600 8971500 9028900 9044600 7966100 5648200 9314300 532860 9252400 7173800 7954000 7970500 9059600 9095600 8830400 7717500 2 2 1 2 2 2 2 2 2 2 2 2501600000 1467700000 1033900000 15595 1476;888 14303 80637;80638;80639 97495;97496;97497;97498 97496 1074 4 QTFSPFGQIMEIR Unmodified 1552.7708 0.77079869 1476;888 Q01085;Q01085-2;P31483;P31483-2 TIAL1;TIA1 Nucleolysin TIAR;Nucleolysin TIA-1 isoform p40 no no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 75.867 75.821 2 0.0019552 24137 20211116_3447_TMUAki_TMT10x_S_F8 69.641 48.942 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15596 1476;888 14303 80640;80641 97499;97500 97500 2 QTFYCVPVPGESTWVK Unmodified 1896.908 0.90802046 2663 Q9BTE3;Q9BTE3-2 MCMBP Mini-chromosome maintenance complex-binding protein yes no 0 0 0 0 By MS/MS By MS/MS 8 0 3 1 2 72.909 72.817 3 0.0068272 23470 20211116_3436_TMUAki_TMT10x_P_F8 57.936 41.754 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15597 2663 14304 80642;80643;80644 97501;97502;97503 97501 3 QTGIVLNRPVLR Unmodified 1364.8252 0.82521752 1633 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.894 2 1 2 2 3 39.062 39.064 3 1.1939E-10 12828 20211116_3441_TMUAki_TMT10x_S_F3 160.18 127.1 7499300 11702000 58116 13730000 10732000 8706700 7750400 9033800 9268100 8011700 10395000 6982500 10927000 655190 13789000 10215000 9187100 8064500 9137800 9402300 7866700 9993100 8 8 6 8 8 8 8 8 8 8 8 1925900 3049200 11584 3775600 5525200 4239200 2616700 2571100 2326600 2029400 2735600 1793300 2848000 220880 3807300 5225400 4252500 2797400 2682100 2394200 2004300 2626200 1 1 1 1 1 1 1 1 1 1 1 5573400 8652800 46531 9954900 5206700 4467500 5133700 6462700 6941500 5982300 7659800 5189200 8078800 434320 9981600 4989100 4934500 5267100 6455700 7008100 5862400 7366900 7 7 5 7 7 7 7 7 7 7 7 621510000 332050000 289450000 15598 1633 14305 80645;80646;80647;80648;80649 97504;97505;97506;97507;97508;97509;97510;97511;97512 97507 9 QTGIVLNRPVLRGEDGDK Unmodified 1966.0596 0.059587149 1633 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 0 2 By MS/MS 6 0 1 1 38.651 38.657 4 0.00019699 8824 20211116_3434_TMUAki_TMT10x_P_F6 75.912 51.354 1777900 2518400 31500 3326800 4382900 3672800 2055100 1878100 2165100 1730500 2247600 1655600 2352900 213240 3341900 4145900 3679900 2209700 1995700 2200700 1696200 2165600 2 2 2 2 2 2 2 2 2 2 2 1777900 2518400 31500 3326800 4382900 3672800 2055100 1878100 2165100 1730500 2247600 1655600 2352900 213240 3341900 4145900 3679900 2209700 1995700 2200700 1696200 2165600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 175510000 175510000 0 15599 1633 14306 80650 97513;97514 97513 2 QTHGILEYYCR Unmodified 1438.6663 0.66633362 3143 Q9UJV9 DDX41 Probable ATP-dependent RNA helicase DDX41 yes yes 0 0 0 0 By MS/MS 6 0 1 1 37.788 37.952 3 0.0011273 8921 20211116_3445_TMUAki_TMT10x_S_F6 77.644 54.727 557960 930550 3505.7 1005200 558950 510100 525410 674030 666930 616810 750540 519520 868580 46860 1012800 535140 553880 539080 675320 675260 604760 721430 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 557960 930550 3505.7 1005200 558950 510100 525410 674030 666930 616810 750540 519520 868580 46860 1012800 535140 553880 539080 675320 675260 604760 721430 3 3 2 3 3 3 3 3 3 3 3 7081100 0 7081100 15600 3143 14307 80651 97515;97516;97517 97515 3 QTIAHQQQQLTNLQMAAQR Oxidation (M) 2223.1178 0.11784708 3124 Q9UHX1-6;Q9UHX1-4;Q9UHX1-2 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 0 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 37.703 37.66 3 1.7319E-08 10981 20211116_3439_TMUAki_TMT10x_S_F1 108.26 97.148 327130 494280 972.53 586430 627170 600840 350050 664290 660600 488030 625670 304600 461560 32230 591960 594450 612630 379170 666930 657220 483900 604640 2 2 2 2 2 2 2 2 2 2 2 200150 263490 186.96 327890 515250 504100 267150 382740 379110 273710 353250 186360 246100 21181 332590 487820 499950 287420 392010 379870 271810 341570 1 1 1 1 1 1 1 1 1 1 1 126980 230790 785.56 258540 111920 96737 82894 281550 281490 214320 272420 118240 215450 11049 259370 106630 112680 91748 274920 277350 212080 263070 1 1 1 1 1 1 1 1 1 1 1 160540000 111740000 48799000 15601 3124 14308 80652;80653 97518;97519 97519 3148 2 QTIDNSQGAYQEAFDISKK Unmodified 2142.0229 0.022926872 825 P27348 YWHAQ 14-3-3 protein theta yes yes 0 0 0 1 By MS/MS By MS/MS 5.36 0.881 2 4 4 1 6 5 56.161 56.327 3;4 5.5633E-41 15993 20211116_3434_TMUAki_TMT10x_P_F6 210.06 198.91 96849000 163180000 1413200 211140000 117510000 134160000 90856000 105020000 112300000 102580000 120500000 90184000 152440000 9257500 210860000 112060000 140770000 94216000 108170000 113590000 100290000 115990000 18 18 11 18 18 18 18 18 18 18 18 46485000 76954000 549410 100830000 86794000 102780000 64235000 50875000 54495000 49613000 57820000 43284000 71896000 4678000 101210000 82672000 103420000 66034000 54308000 55983000 48507000 55674000 10 10 6 10 10 10 10 10 10 10 10 50364000 86226000 863790 110310000 30712000 31379000 26621000 54143000 57801000 52968000 62684000 46899000 80549000 4579500 109650000 29390000 37347000 28182000 53865000 57611000 51779000 60317000 8 8 5 8 8 8 8 8 8 8 8 13850000000 8719900000 5130500000 15602 825 14309 80654;80655;80656;80657;80658;80659;80660;80661;80662;80663;80664 97520;97521;97522;97523;97524;97525;97526;97527;97528;97529;97530;97531;97532;97533;97534;97535;97536;97537 97524 18 QTIGNSCGTIGLIHAVANNQDK Unmodified 2310.1386 0.13864211 588 P09936 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.3 2.24 2 1 3 4 6 4 54.215 54.383 3;4 1.0431E-56 16106 20211116_3440_TMUAki_TMT10x_S_F2 236.96 210.22 138440000 223360000 381100 263830000 165480000 185780000 142420000 99019000 111450000 108510000 149710000 128890000 208570000 10825000 265130000 158020000 192130000 144710000 105340000 116090000 105590000 143240000 17 17 6 17 17 17 17 17 17 17 17 82798000 123730000 76170 153360000 110610000 141920000 94372000 60882000 64287000 63855000 86550000 77085000 115560000 6343400 154190000 105590000 143470000 95643000 66079000 67507000 62241000 82802000 11 11 2 11 11 11 11 11 11 11 11 55642000 99625000 304930 110470000 54873000 43857000 48053000 38137000 47160000 44659000 63161000 51807000 93001000 4481900 110940000 52435000 48659000 49071000 39259000 48584000 43347000 60434000 6 6 4 6 6 6 6 6 6 6 6 39188000000 20254000000 18934000000 15603 588 14310 80665;80666;80667;80668;80669;80670;80671;80672;80673;80674 97538;97539;97540;97541;97542;97543;97544;97545;97546;97547;97548;97549;97550;97551;97552;97553;97554 97549 17 QTIGNSCGTIGLIHAVANNQDKLGFEDGSVLK Unmodified 3355.6831 0.6830529 588 P09936 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1 yes yes 0 0 0 1 By MS/MS By MS/MS 5.56 3.02 2 1 2 4 4 5 71.198 71.213 4;5 6.0444E-46 22249 20211116_3447_TMUAki_TMT10x_S_F8 193.47 175.2 54565000 118510000 1180600 47219000 137890000 248920000 129410000 216830000 176980000 198250000 144240000 50814000 110320000 6525500 56223000 132070000 240420000 133180000 221520000 176800000 194390000 140150000 13 13 10 13 13 13 13 13 13 13 13 24035000 54939000 259090 20320000 42049000 147140000 66547000 103560000 80986000 99959000 66962000 22381000 51135000 2226800 25071000 40946000 141090000 66668000 107390000 81260000 97774000 65030000 5 5 3 5 5 5 5 5 5 5 5 30530000 63575000 921560 26899000 95838000 101780000 62862000 113260000 95991000 98295000 77276000 28433000 59186000 4298700 31152000 91120000 99329000 66513000 114130000 95540000 96617000 75125000 8 8 7 8 8 8 8 8 8 8 8 34314000000 20319000000 13995000000 15604 588 14311 80675;80676;80677;80678;80679;80680;80681;80682;80683 97555;97556;97557;97558;97559;97560;97561;97562;97563;97564;97565;97566;97567 97566 13 QTIMETLEQGPAQASPSYVPLFK Unmodified 2534.2727 0.27267597 280 O60645 EXOC3 Exocyst complex component 3 yes yes 0 0 0 0 By MS/MS 4 0 1 1 75.106 75.135 3 0.062389 24689 20211116_3431_TMUAki_TMT10x_P_F4 36.805 20.498 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15605 280 14312 80684 97568 97568 1 QTISNACGTIGLIHAIANNK Unmodified 2095.0844 0.084421692 683 P15374 UCHL3 Ubiquitin carboxyl-terminal hydrolase isozyme L3 yes yes 0 0 0 0 By MS/MS 3 0 1 1 64.787 64.336 3 1.4928E-41 23008 20211116_3441_TMUAki_TMT10x_S_F3 204.23 192.54 5937100 9372400 57365 11217000 6456000 5204300 6074900 5268700 5334000 5293300 7052500 5527500 8752400 435500 11223000 6176600 5674200 6159100 5354300 5519800 5168700 6750100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5937100 9372400 57365 11217000 6456000 5204300 6074900 5268700 5334000 5293300 7052500 5527500 8752400 435500 11223000 6176600 5674200 6159100 5354300 5519800 5168700 6750100 2 2 1 2 2 2 2 2 2 2 2 456780000 0 456780000 15606 683 14313 80685 97569;97570 97569 2 QTISNACGTIGLIHAIANNKDK Unmodified 2338.2063 0.20632774 683 P15374 UCHL3 Ubiquitin carboxyl-terminal hydrolase isozyme L3 yes yes 0 0 0 1 By MS/MS 2 0 1 1 60.174 59.911 4 0.01014 19634 20211116_3429_TMUAki_TMT10x_P_F2 46.92 32.61 2085100 3657100 0 2910500 3544800 6411400 3180600 3862500 3534100 3320000 3368500 1941400 3409700 190110 3074200 3389500 6258300 3256200 4039500 3574000 3264900 3254600 1 1 0 1 1 1 1 1 1 1 1 2085100 3657100 0 2910500 3544800 6411400 3180600 3862500 3534100 3320000 3368500 1941400 3409700 190110 3074200 3389500 6258300 3256200 4039500 3574000 3264900 3254600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 512190000 512190000 0 15607 683 14314 80686 97571 97571 1 QTLAAFVPLLLK Unmodified 1312.8119 0.81185887 1754 Q15021 NCAPD2 Condensin complex subunit 1 yes yes 0 0 0 0 By MS/MS 6 0 2 2 80.777 80.777 2;3 7.7506E-05 26407 20211116_3445_TMUAki_TMT10x_S_F6 89.805 68.903 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15608 1754 14315 80687;80688 97572;97573 97572 2 QTLENERGELANEVK Unmodified 1728.8642 0.86424139 934 P35579 MYH9 Myosin-9 yes yes 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 40.732 40.43 3 0.00028351 13239 20211116_3441_TMUAki_TMT10x_S_F3 80.459 65.772 1630500 2625400 0 3557000 1199400 1366900 1216300 2196200 2677000 2104800 2684900 1518100 2453300 116810 3530100 1149700 1546300 1278100 2188400 2659800 2059500 2589700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1630500 2625400 0 3557000 1199400 1366900 1216300 2196200 2677000 2104800 2684900 1518100 2453300 116810 3530100 1149700 1546300 1278100 2188400 2659800 2059500 2589700 1 1 0 1 1 1 1 1 1 1 1 88854000 0 88854000 15609 934 14316 80689;80690 97574;97575 97575 2 QTLLALEKEEEEEVFESSVPQR Unmodified 2589.281 0.28099205 276 O60566;O60566-3;O60566-2 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta yes no 0 0 0 1 By MS/MS 1 0 1 1 76.566 76.566 3 0.00070327 24865 20211116_3428_TMUAki_TMT10x_P_F1 65.833 51.373 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15610 276 14317 80691 97576 97576 1 QTLLLRPGGK Unmodified 1081.6608 0.66077796 1508 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 0 0 0 1 By MS/MS 4 0 1 1 38.401 38.577 3 0.097907 10205 20211116_3442_TMUAki_TMT10x_S_F4 36.847 18.535 323910 524190 4885.7 546760 338390 274060 315180 347700 326490 343220 406190 301630 489210 31610 552120 324180 297670 321270 349670 334480 335390 389370 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 323910 524190 4885.7 546760 338390 274060 315180 347700 326490 343220 406190 301630 489210 31610 552120 324180 297670 321270 349670 334480 335390 389370 1 1 1 1 1 1 1 1 1 1 1 14240000 0 14240000 15611 1508 14318 80692 97577 97577 1 QTLMWSATWPK Oxidation (M) 1363.6595 0.65945733 710;2368 P17844;P17844-2;Q92841;Q92841-3;Q92841-1;Q92841-2 DDX5;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 no no 0 0 1 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 65.05 64.774 3 6.3757E-08 23173 20211116_3441_TMUAki_TMT10x_S_F3 119.74 104.54 6520500 10406000 61975 9595000 7840800 10594000 8768000 6219100 5853200 6711500 8137500 6071600 9706800 599430 9860700 7544000 10632000 8755000 6558700 6163300 6534500 7779200 3 3 1 3 3 3 3 3 3 3 3 5090300 7909200 0 7617100 6407900 8509300 7259700 3708200 3325900 4344100 5859300 4739400 7379000 423060 7804600 6164500 8505800 7197500 4031600 3645500 4216500 5573800 2 2 0 2 2 2 2 2 2 2 2 1430200 2496700 61975 1977900 1432800 2084400 1508200 2510900 2527400 2367300 2278200 1332100 2327800 176370 2056000 1379500 2126500 1557500 2527100 2517700 2318000 2205500 1 1 1 1 1 1 1 1 1 1 1 1416300000 1005200000 411110000 15612 710;2368 14319 80693;80694;80695;80696 97578;97579;97580;97581 97581 794 4 QTLMWSATWPK Unmodified 1347.6645 0.66454271 710;2368 P17844;P17844-2;Q92841;Q92841-3;Q92841-1;Q92841-2 DDX5;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 no no 0 0 0 0 By MS/MS By MS/MS 4 0 4 2 2 70.91 70.818 2;3 0.00061734 23419 20211116_3442_TMUAki_TMT10x_S_F4 80.69 55.304 5559200 9599900 69129 10604000 6629900 4591500 6648100 3939400 3714800 4269500 6886100 5176700 8961500 540320 10657000 6361700 5033700 6651700 4048100 4020100 4156300 6544600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5559200 9599900 69129 10604000 6629900 4591500 6648100 3939400 3714800 4269500 6886100 5176700 8961500 540320 10657000 6361700 5033700 6651700 4048100 4020100 4156300 6544600 2 2 2 2 2 2 2 2 2 2 2 801670000 398530000 403130000 15613 710;2368 14319 80697;80698;80699;80700 97582;97583;97584 97583 3 QTLQSEQPLQVAR Unmodified 1496.7947 0.79470526 945 P35998 PSMC2 26S protease regulatory subunit 7 yes yes 0 0 0 0 By MS/MS 4 0 1 1 38.219 38.377 2 1.0961E-29 10098 20211116_3442_TMUAki_TMT10x_S_F4 247.3 206.14 148820 225810 487.2 408770 103340 57819 122480 162480 202560 119210 245340 138570 211390 12155 398840 99601 82901 125710 158620 204080 118210 235340 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 148820 225810 487.2 408770 103340 57819 122480 162480 202560 119210 245340 138570 211390 12155 398840 99601 82901 125710 158620 204080 118210 235340 1 1 1 1 1 1 1 1 1 1 1 10375000 0 10375000 15614 945 14320 80701 97585 97585 1 QTMEQLSAIK Oxidation (M) 1163.5856 0.58562368 3376 yes yes 0 0 1 0 By MS/MS By MS/MS 5.17 2.15 3 1 1 1 6 7 5 54.4 54.42 2 0.0038117 24155 20211116_3446_TMUAki_TMT10x_S_F7 81.338 52.611 + 160700000 253770000 670400 265900000 153930000 251570000 167970000 136420000 140610000 155400000 182440000 149610000 236840000 11548000 270200000 147840000 254580000 168800000 145080000 145720000 150990000 174700000 18 18 7 18 18 18 18 18 18 18 18 133210000 205550000 306330 220310000 124570000 220840000 135400000 105900000 111720000 123820000 146640000 124010000 191860000 8989900 223720000 119590000 222360000 136050000 114010000 115930000 120190000 140380000 11 11 3 11 11 11 11 11 11 11 11 27489000 48220000 364070 45595000 29351000 30729000 32572000 30521000 28888000 31573000 35804000 25597000 44985000 2557600 46478000 28241000 32217000 32757000 31073000 29795000 30793000 34325000 7 7 4 7 7 7 7 7 7 7 7 50087000000 34859000000 15228000000 15615 3376 14321 80702;80703;80704;80705;80706;80707;80708;80709;80710;80711;80712;80713 97586;97587;97588;97589 97589 3308 4 QTMLFSATQTR Oxidation (M) 1298.6289 0.62888548 2976 Q9NVP1 DDX18 ATP-dependent RNA helicase DDX18 yes yes 0 0 1 0 By MS/MS By MS/MS 8 0 2 1 1 37.553 37.91 2 1.3272E-05 9170 20211116_3436_TMUAki_TMT10x_P_F8 117.94 96.481 369680 556100 4195.2 761650 795160 628910 446550 495810 582890 413680 570800 344210 519670 36995 760500 753700 645890 475410 508360 586600 407400 551010 2 2 1 2 2 2 2 2 2 2 2 178480 247960 0 348170 627160 478470 272620 224770 288980 182710 277250 166150 231750 17558 350060 592210 473700 295580 240080 292860 180180 267820 1 1 0 1 1 1 1 1 1 1 1 191200 308140 4195.2 413480 168000 150440 173930 271040 293910 230970 293550 178060 287920 19437 410440 161490 172190 179830 268290 293740 227230 283190 1 1 1 1 1 1 1 1 1 1 1 34221000 23940000 10281000 15616 2976 14322 80714;80715 97590;97591 97590 3061 2 QTMQVDEHARPQTTLEQLQK Oxidation (M) 2396.1754 0.17542154 1019 P42765 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes yes 0 0 1 1 By MS/MS By MS/MS 5 0 2 1 1 36.902 36.97 4 6.389E-25 8288 20211116_3444_TMUAki_TMT10x_S_F5 176.27 157.73 580550 914680 2127.8 1359300 1199000 1028600 630320 1049600 1071800 795930 889970 540510 855160 51888 1350400 1135000 1068700 682760 1058500 1064600 787790 864150 2 2 1 2 2 2 2 2 2 2 2 343330 537250 0 769410 1066100 890100 518540 549140 564440 475310 495290 319620 502180 31700 770330 1008000 891670 556030 573320 569760 467250 479930 1 1 0 1 1 1 1 1 1 1 1 237220 377440 2127.8 589900 132840 138490 111770 500450 507400 320620 394680 220890 352980 20189 580040 126970 177060 126720 485170 494880 320540 384220 1 1 1 1 1 1 1 1 1 1 1 247550000 174960000 72593000 15617 1019 14323 80716;80717 97592;97593 97593 1319 2 QTNPSAMEVEEDDPVPEIR Oxidation (M) 2170.9688 0.96884239 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 50.378 50.242 3 1.2307E-17 16164 20211116_3439_TMUAki_TMT10x_S_F1 145.52 130.1 4722100 8086700 99492 8399200 8372600 13763000 6331800 7636700 9303000 7894100 6480600 4397500 7546900 535340 8626700 7982700 13553000 6621300 8081300 9234000 7699200 6339000 4 4 4 4 4 4 4 4 4 4 4 3851700 6507600 78575 6823900 7861700 13024000 5874800 6203600 7577100 6390400 5340300 3586900 6073500 448730 7031800 7493000 12732000 6115600 6657200 7554500 6233500 5220800 3 3 3 3 3 3 3 3 3 3 3 870370 1579100 20917 1575400 510870 739450 457030 1433100 1725900 1503700 1140300 810560 1473400 86619 1594900 489760 820450 505680 1424200 1679500 1465700 1118200 1 1 1 1 1 1 1 1 1 1 1 724380000 457010000 267360000 15618 1235 14324 80718;80719 97594;97595;97596;97597 97597 1670 4 QTNPSAMEVEEDDPVPEIR Unmodified 2154.9739 0.97392777 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 56.054 55.753 3 3.4626E-06 18456 20211116_3439_TMUAki_TMT10x_S_F1 88.036 81.42 1204500 2405300 52701 2453000 1288400 1183800 950840 1453200 1235200 1192400 1903400 1121900 2244600 150150 2480100 1230100 1290300 990930 1456100 1267800 1175300 1815500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1204500 2405300 52701 2453000 1288400 1183800 950840 1453200 1235200 1192400 1903400 1121900 2244600 150150 2480100 1230100 1290300 990930 1456100 1267800 1175300 1815500 1 1 1 1 1 1 1 1 1 1 1 146270000 0 146270000 15619 1235 14324 80720;80721 97598;97599 97599 2 QTNPSAMEVEEDDPVPEIRR Oxidation (M) 2327.07 0.069953419 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 1 1 By MS/MS By MS/MS 1.5 0.5 3 3 3 3 42.229 42.164 3;4 2.501E-18 12727 20211116_3439_TMUAki_TMT10x_S_F1 149.33 139.91 4490900 7564600 17527 8564300 8891900 12270000 5979500 9477700 10079000 7647500 7364500 4181000 7062300 377650 8721800 8449100 12209000 6344400 9722400 9977800 7544300 7188300 10 10 3 10 10 10 10 10 10 10 10 3315500 5484500 6368 6066500 7969000 11359000 5181700 7271400 7745700 5901700 5366900 3086600 5119800 282760 6226900 7567300 11154000 5481100 7558300 7683300 5820400 5250900 6 6 1 6 6 6 6 6 6 6 6 1175500 2080100 11159 2497700 922860 910950 797800 2206300 2333200 1745800 1997600 1094500 1942500 94895 2494900 881800 1055000 863310 2164100 2294500 1724000 1937400 4 4 2 4 4 4 4 4 4 4 4 1890900000 1341100000 549790000 15620 1235 14325 80722;80723;80724;80725;80726;80727 97600;97601;97602;97603;97604;97605;97606;97607;97608;97609 97606 1670 10 QTNPSAMEVEEDDPVPEIRR Unmodified 2311.075 0.075038797 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 1 By MS/MS By MS/MS 1.8 0.748 2 2 1 3 2 46.837 46.722 3 1.6016E-24 12677 20211116_3428_TMUAki_TMT10x_P_F1 171.13 158.34 6317900 10084000 122050 11285000 9358800 11957000 7237000 9120900 8568500 6993500 8780800 5883500 9413800 680130 11438000 8927700 12076000 7492900 9352900 8666200 6917900 8464000 5 5 5 5 5 5 5 5 5 5 5 3861300 5759000 83826 6665900 6965900 9572400 5348100 5589800 5185700 4113700 5097900 3595900 5377100 441730 6779800 6643600 9483000 5504400 5840100 5279600 4078400 4920500 3 3 3 3 3 3 3 3 3 3 3 2456600 4324900 38221 4619500 2392900 2384600 1888900 3531100 3382800 2879800 3682900 2287600 4036700 238400 4658400 2284100 2592800 1988600 3512900 3386700 2839400 3543500 2 2 2 2 2 2 2 2 2 2 2 1262200000 899830000 362400000 15621 1235 14325 80728;80729;80730;80731;80732 97610;97611;97612;97613;97614 97610 5 QTPMASSPRPK Unmodified 1198.6128 0.61284149 1930 Q5SSJ5;Q5SSJ5-2 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 1 By MS/MS 1 0 1 1 28.982 29.062 3 0.047885 7621 20211116_3439_TMUAki_TMT10x_S_F1 46.481 27.21 84016 141710 0 131930 90912 64336 95931 58688 65275 53608 102940 78209 132200 4814.8 134270 87151 69584 96095 59803 69084 52565 98133 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 84016 141710 0 131930 90912 64336 95931 58688 65275 53608 102940 78209 132200 4814.8 134270 87151 69584 96095 59803 69084 52565 98133 1 1 0 1 1 1 1 1 1 1 1 3051000 0 3051000 15622 1930 14326 80733 97615 97615 1 QTQAASASQGSASAAEVLLR Unmodified 1944.9865 0.98648179 2399 Q969V3;Q969V3-2 NCLN Nicalin yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 48.406 48.542 3 0.0050934 12848 20211116_3434_TMUAki_TMT10x_P_F6 53.278 41.113 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15623 2399 14327 80734;80735 97616;97617 97616 2 QTQIFTTYSDNQPGVLIQVYEGER Unmodified 2785.3559 0.35588833 596 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B no no 0 0 0 0 By MS/MS 4 0 1 1 77.21 77.227 3 2.3942E-22 25565 20211116_3431_TMUAki_TMT10x_P_F4 142.45 131.14 1138700 1904100 0 1550500 1004700 1960000 1433600 1506200 1410800 1457600 1618200 1060100 1775400 78471 1612900 973180 1961200 1431000 1552800 1443600 1425600 1554600 1 1 0 1 1 1 1 1 1 1 1 1138700 1904100 0 1550500 1004700 1960000 1433600 1506200 1410800 1457600 1618200 1060100 1775400 78471 1612900 973180 1961200 1431000 1552800 1443600 1425600 1554600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1066700000 1066700000 0 15624 596 14328 80736 97618 97618 1 QTQTFTTYSDNQPGVLIQVYEGER Unmodified 2773.3195 0.31950282 615 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 By MS/MS By MS/MS 3.56 1.03 5 8 8 6 16 11 72.808 72.686 2;3;4 4.1716E-127 23566 20211116_3442_TMUAki_TMT10x_S_F4 336.79 325.42 86791000 144920000 565900 133880000 97566000 141290000 107950000 99862000 97052000 98770000 112660000 80809000 135190000 5711400 137470000 93794000 142550000 108620000 103590000 99764000 96509000 108190000 42 42 18 42 42 42 42 42 42 42 42 47703000 79172000 179530 74069000 44689000 93727000 55321000 56914000 56903000 57915000 62255000 44413000 73856000 2646500 76217000 43096000 93443000 55607000 59754000 58009000 56521000 59889000 23 23 8 23 23 23 23 23 23 23 23 39088000 65753000 386370 59809000 52878000 47566000 52631000 42947000 40149000 40855000 50402000 36396000 61332000 3064800 61252000 50698000 49108000 53012000 43836000 41755000 39987000 48304000 19 19 10 19 19 19 19 19 19 19 19 57465000000 30364000000 27100000000 15625 615 14329 80737;80738;80739;80740;80741;80742;80743;80744;80745;80746;80747;80748;80749;80750;80751;80752;80753;80754;80755;80756;80757;80758;80759;80760;80761;80762;80763 97619;97620;97621;97622;97623;97624;97625;97626;97627;97628;97629;97630;97631;97632;97633;97634;97635;97636;97637;97638;97639;97640;97641;97642;97643;97644;97645;97646;97647;97648;97649;97650;97651;97652;97653;97654;97655;97656;97657;97658;97659;97660;97661;97662;97663;97664 97658 46 QTSGGPVDASSEYQQELER Unmodified 2079.9345 0.93450579 725 P18859;P18859-2 ATP5J ATP synthase-coupling factor 6, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 3 1 43.895 43.819 3 2.4635E-22 11636 20211116_3428_TMUAki_TMT10x_P_F1 149.72 137.01 2222300 3737000 24963 4424400 5123500 4730500 2968500 3330000 3651700 2631400 3441300 2069200 3489600 226110 4469700 4858500 4768800 3144900 3435500 3677600 2598700 3326200 5 5 3 5 5 5 5 5 5 5 5 1602800 2660900 6592.4 3005600 4594700 4256200 2472500 2393000 2642200 1871900 2372000 1492300 2484200 161690 3060600 4351400 4216900 2624200 2511500 2671000 1849600 2296600 3 3 2 3 3 3 3 3 3 3 3 619490 1076100 18371 1418800 528790 474310 495950 937040 1009500 759510 1069200 576920 1005400 64422 1409100 507140 551860 520680 924050 1006700 749090 1029600 2 2 1 2 2 2 2 2 2 2 2 458820000 378430000 80389000 15626 725 14330 80764;80765;80766;80767 97665;97666;97667;97668;97669;97670 97665 6 QTSGGPVDASSEYQQELERELFK Unmodified 2597.2245 0.22453981 725 P18859;P18859-2 ATP5J ATP synthase-coupling factor 6, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 2.6 1.02 1 1 2 1 2 3 71.367 71.142 3 9.8959E-116 25753 20211116_3441_TMUAki_TMT10x_S_F3 336.87 311.67 12272000 20829000 209080 18528000 15752000 18451000 15146000 12976000 12064000 12109000 15109000 11428000 19427000 1261100 19063000 15101000 18678000 15300000 13444000 12516000 11862000 14481000 4 4 4 4 4 4 4 4 4 4 4 5886200 9202400 108750 8298300 5078300 10331000 6558300 5975800 5447600 5462600 6896300 5481500 8583500 578040 8559900 4913100 10302000 6540600 6280200 5642000 5356200 6607800 2 2 2 2 2 2 2 2 2 2 2 6386200 11626000 100330 10229000 10673000 8119600 8587800 7000700 6616600 6646500 8212800 5947000 10843000 683020 10503000 10188000 8376700 8759000 7163700 6874200 6505900 7873200 2 2 2 2 2 2 2 2 2 2 2 2205900000 513110000 1692800000 15627 725 14331 80768;80769;80770;80771;80772 97671;97672;97673;97674;97675 97675 5 QTTVSNSQQAYQEAFEISK Unmodified 2158.0178 0.017841494 895 P31946;P31946-2 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 58.64 58.747 3 8.1278E-13 17401 20211116_3445_TMUAki_TMT10x_S_F6 136.49 120.18 21980000 40824000 1108900 39065000 28151000 43386000 28627000 41382000 31898000 31446000 32781000 20474000 38087000 2942200 40041000 27072000 43887000 29114000 41878000 32339000 31121000 31596000 10 10 10 10 10 10 10 10 10 10 10 12664000 23387000 631730 21881000 18211000 33318000 19308000 24978000 18401000 18353000 18779000 11796000 21817000 1716400 22599000 17528000 33049000 19500000 25618000 18773000 18198000 18104000 6 6 6 6 6 6 6 6 6 6 6 9315700 17437000 477160 17184000 9939900 10068000 9319100 16404000 13497000 13093000 14003000 8677400 16270000 1225800 17442000 9544100 10838000 9614600 16260000 13566000 12923000 13492000 4 4 4 4 4 4 4 4 4 4 4 4622000000 2410100000 2211900000 15628 895 14332 80773;80774;80775;80776;80777 97676;97677;97678;97679;97680;97681;97682;97683;97684;97685 97685 10 QTTVSNSQQAYQEAFEISKK Unmodified 2286.1128 0.11280451 895 P31946;P31946-2 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes no 0 0 0 1 By MS/MS By MS/MS 6.5 0.806 1 4 4 1 5 5 54.733 55.06 3;4 3.8928E-64 17840 20211116_3446_TMUAki_TMT10x_S_F7 263.51 246.49 63786000 105740000 827220 127470000 85112000 103320000 68338000 79176000 82352000 75468000 78486000 59395000 98744000 6109500 128140000 81222000 106200000 70629000 81608000 83029000 73859000 75833000 15 15 8 15 15 15 15 15 15 15 15 36524000 59413000 471010 72237000 63528000 83119000 51550000 45601000 46347000 43048000 43301000 34009000 55486000 3654900 72950000 60628000 83162000 52755000 48181000 47270000 42149000 41865000 9 9 4 9 9 9 9 9 9 9 9 27262000 46323000 356210 55230000 21584000 20201000 16788000 33575000 36005000 32419000 35185000 25386000 43258000 2454700 55191000 20593000 23041000 17874000 33428000 35759000 31710000 33967000 6 6 4 6 6 6 6 6 6 6 6 13586000000 7817900000 5767900000 15629 895 14333 80778;80779;80780;80781;80782;80783;80784;80785;80786;80787 97686;97687;97688;97689;97690;97691;97692;97693;97694;97695;97696;97697;97698;97699;97700;97701 97700 16 QTVADQVLVGSYCVFSNQGGLVHPK Unmodified 2702.3486 0.34863488 1258 P56537;P56537-2 EIF6 Eukaryotic translation initiation factor 6 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 2.12 2 5 1 4 4 74.77 74.7 3;4;5 4.4722E-23 24343 20211116_3440_TMUAki_TMT10x_S_F2 154.13 140.81 42889000 69965000 405180 60315000 46589000 73180000 55662000 47403000 48362000 48531000 51125000 39936000 65249000 2772900 62406000 44918000 73178000 55760000 49531000 49617000 47351000 49233000 13 13 7 13 13 13 13 13 13 13 13 28562000 42385000 225510 37528000 25783000 55106000 34896000 31723000 33004000 32102000 33424000 26596000 39531000 1402800 38891000 24964000 54528000 34862000 33445000 33673000 31337000 32230000 7 7 3 7 7 7 7 7 7 7 7 14327000 27580000 179660 22787000 20805000 18074000 20766000 15680000 15358000 16429000 17701000 13341000 25717000 1370100 23515000 19954000 18650000 20898000 16086000 15944000 16015000 17003000 6 6 4 6 6 6 6 6 6 6 6 10616000000 6253800000 4362200000 15630 1258 14334 80788;80789;80790;80791;80792;80793;80794;80795 97702;97703;97704;97705;97706;97707;97708;97709;97710;97711;97712;97713;97714 97711 13 QTVAVGVIK Unmodified 913.55967 0.55966693 1416;1520 P68104;Q5VTE0;Q05639 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2 no no 0 0 0 0 By MS/MS By MS/MS 5.4 2.27 2 1 2 1 2 4 4 4 10 10 44.23 44.364 2;3 2.3936E-06 11246 20211116_3447_TMUAki_TMT10x_S_F8 192.6 117.5 99132000 154820000 457580 148000000 128040000 146760000 103780000 108620000 105320000 99169000 116420000 92300000 144440000 8484400 151440000 122150000 148730000 106590000 112080000 107470000 97243000 111970000 21 21 8 21 21 21 21 21 21 21 21 60950000 93021000 329390 88730000 91082000 113490000 66389000 66133000 64339000 60621000 70943000 56751000 86783000 5467100 91192000 86712000 113030000 68569000 69465000 65778000 59433000 68232000 10 10 5 10 10 10 10 10 10 10 10 38181000 61796000 128200 59265000 36956000 33269000 37392000 42489000 40981000 38547000 45481000 35550000 57653000 3017300 60251000 35437000 35703000 38016000 42617000 41694000 37810000 43735000 11 11 3 11 11 11 11 11 11 11 11 28288000000 17614000000 10674000000 15631 1416;1520 14335 80796;80797;80798;80799;80800;80801;80802;80803;80804;80805;80806;80807;80808;80809;80810;80811;80812;80813;80814;80815 97715;97716;97717;97718;97719;97720;97721;97722;97723;97724;97725;97726;97727;97728;97729;97730;97731;97732;97733;97734;97735;97736;97737 97736 23 QTVFLLEKPFSVK Unmodified 1534.8759 0.87591569 281 O60678;O60678-2 PRMT3 Protein arginine N-methyltransferase 3 yes no 0 0 0 1 By MS/MS By MS/MS 3 0 2 1 1 71.511 71.14 3 1.5622E-08 24698 20211116_3430_TMUAki_TMT10x_P_F3 116.43 83.022 13125000 23238000 205620 16191000 27860000 16505000 14984000 24106000 20956000 20078000 20498000 12222000 21657000 1486100 17020000 26402000 16966000 16057000 24005000 21042000 19775000 19788000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13125000 23238000 205620 16191000 27860000 16505000 14984000 24106000 20956000 20078000 20498000 12222000 21657000 1486100 17020000 26402000 16966000 16057000 24005000 21042000 19775000 19788000 2 2 2 2 2 2 2 2 2 2 2 392320000 0 392320000 15632 281 14336 80816;80817 97738;97739;97740 97738 3 QTVMFSATFPR Oxidation (M) 1299.6282 0.6281572 2049 Q7L014 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 0 0 1 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 51.254 51.114 2 0.0019819 14482 20211116_3428_TMUAki_TMT10x_P_F1 81.335 63.111 8123800 13924000 111850 14081000 9651900 13403000 8778100 12453000 12985000 11418000 12152000 7564600 12993000 763770 14344000 9237200 13675000 9080000 12678000 12997000 11194000 11749000 4 4 2 4 4 4 4 4 4 4 4 3903100 6580100 41343 6163100 5601500 9596600 5191700 5905300 6371200 5547200 5346800 3634300 6138300 363620 6368200 5361700 9481700 5324100 6179700 6393600 5432400 5189600 2 2 1 2 2 2 2 2 2 2 2 4220700 7343900 70510 7918100 4050300 3806400 3586500 6547500 6614100 5871300 6805400 3930300 6854800 400150 7975800 3875400 4192900 3755900 6498500 6603000 5762100 6559000 2 2 1 2 2 2 2 2 2 2 2 590110000 216620000 373490000 15633 2049 14337 80818;80819;80820 97741;97742;97743 97742 2565 3 QTYFLPVIGLVDAEK Unmodified 1691.9134 0.91342341 711 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 0 0 By MS/MS By MS/MS 7.09 0.793 3 4 4 6 5 80.104 80.113 2;3 1.1877E-29 25845 20211116_3447_TMUAki_TMT10x_S_F8 206.2 173.67 64691000 106590000 371310 100140000 72894000 94576000 76805000 60124000 57508000 62768000 74690000 60233000 99434000 5461200 102530000 69992000 95917000 77105000 62948000 59959000 61194000 71519000 13 13 6 13 13 13 13 13 13 13 13 40841000 66770000 365070 62070000 38707000 65648000 42737000 38209000 36315000 39279000 46307000 38028000 62286000 3469600 63707000 37223000 66041000 42940000 40265000 37580000 38318000 44361000 8 8 5 8 8 8 8 8 8 8 8 23850000 39818000 6243.4 38068000 34188000 28928000 34068000 21915000 21193000 23490000 28383000 22205000 37148000 1991600 38823000 32769000 29876000 34165000 22683000 22378000 22876000 27158000 5 5 1 5 5 5 5 5 5 5 5 11696000000 5937400000 5758300000 15634 711 14338 80821;80822;80823;80824;80825;80826;80827;80828;80829;80830;80831 97744;97745;97746;97747;97748;97749;97750;97751;97752;97753;97754;97755;97756 97756 13 QTYSTEPNNLK Unmodified 1293.6201 0.62009493 1053 P46779;P46779-2;P46779-3;P46779-4;P46779-5 RPL28 60S ribosomal protein L28 yes no 0 0 0 0 By MS/MS By MS/MS 4.25 0.661 1 4 3 4 4 52.478 52.592 2;3 0.029377 15892 20211116_3442_TMUAki_TMT10x_S_F4 59.153 18.271 30864000 48093000 28323 57399000 41067000 32036000 29058000 29494000 30882000 25473000 38541000 28736000 44910000 2525300 57520000 39063000 34144000 30160000 29995000 31610000 25044000 36942000 10 10 2 10 10 10 10 10 10 10 10 10029000 14187000 171.38 17675000 20265000 16781000 10578000 9141400 9220600 7715400 11620000 9337000 13251000 906030 17772000 19183000 16979000 11194000 9637200 9524900 7594000 11135000 3 3 1 3 3 3 3 3 3 3 3 20836000 33906000 28152 39724000 20802000 15256000 18480000 20352000 21662000 17758000 26920000 19399000 31659000 1619200 39748000 19880000 17165000 18965000 20358000 22085000 17450000 25806000 7 7 1 7 7 7 7 7 7 7 7 2728700000 1633700000 1095100000 15635 1053 14339 80832;80833;80834;80835;80836;80837;80838;80839 97757;97758;97759;97760;97761;97762;97763;97764;97765 97761 9 QVAASTAQLLVACK Unmodified 1458.7864 0.78644876 3293 Q9Y490;Q9Y4G6 TLN1;TLN2 Talin-1;Talin-2 yes no 0 0 0 0 By MS/MS 1 0 1 1 58.943 58.943 3 0.0013476 17612 20211116_3428_TMUAki_TMT10x_P_F1 66.215 49.19 1791100 2908900 50494 2893000 2439000 4159900 2603800 2423000 2287400 2467900 2699700 1668000 2714200 204630 2971400 2345800 4120600 2622700 2552500 2355500 2408400 2591500 1 1 1 1 1 1 1 1 1 1 1 1791100 2908900 50494 2893000 2439000 4159900 2603800 2423000 2287400 2467900 2699700 1668000 2714200 204630 2971400 2345800 4120600 2622700 2552500 2355500 2408400 2591500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 330990000 330990000 0 15636 3293 14340 80840 97766 97766 1 QVAGTMKLELAQYR Oxidation (M) 1622.845 0.84502627 805 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 1 1 By MS/MS 8 0 1 1 44.128 44.098 3 0.027134 11215 20211116_3447_TMUAki_TMT10x_S_F8 48.351 32.812 877620 1576800 20912 1423200 971180 814980 790060 1879000 1868400 1230700 1515100 817300 1470700 93560 1453700 927920 891680 844240 1837400 1841100 1228700 1472500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 877620 1576800 20912 1423200 971180 814980 790060 1879000 1868400 1230700 1515100 817300 1470700 93560 1453700 927920 891680 844240 1837400 1841100 1228700 1472500 1 1 1 1 1 1 1 1 1 1 1 76456000 0 76456000 15637 805 14341 80841 97767 97767 954 1 QVCEIIESPLFLK Unmodified 1574.8378 0.83781563 2062 Q7L5N1 COPS6 COP9 signalosome complex subunit 6 yes yes 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 78.354 78.37 2;3 1.988E-08 27593 20211116_3446_TMUAki_TMT10x_S_F7 110.29 89.63 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15638 2062 14342 80842;80843 97768;97769 97769 2 QVCQLPGLFSYAQHIASIDGR Unmodified 2359.1743 0.17429933 3346 Q9Y6C9 MTCH2 Mitochondrial carrier homolog 2 yes yes 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 77.241 77.153 3 4.8726E-05 26619 20211116_3429_TMUAki_TMT10x_P_F2 71.535 52.46 2743700 4223700 50368 4609900 2508800 5031500 2904700 2749300 2858600 3123300 3994900 2555000 3942600 271120 4681900 2418500 5048500 2924200 2921700 2950400 3035000 3818500 1 1 1 1 1 1 1 1 1 1 1 2743700 4223700 50368 4609900 2508800 5031500 2904700 2749300 2858600 3123300 3994900 2555000 3942600 271120 4681900 2418500 5048500 2924200 2921700 2950400 3035000 3818500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1234600000 1234600000 0 15639 3346 14343 80844;80845 97770 97770 1 QVEEALHQLHAR Unmodified 1429.7426 0.74261011 75 O00233;O00233-2 PSMD9 26S proteasome non-ATPase regulatory subunit 9 yes no 0 0 0 0 By matching By MS/MS 4.67 0.471 1 2 2 1 35.528 35.581 4 0.064303 7674 20211116_3444_TMUAki_TMT10x_S_F5 39.016 27.448 347480 644790 11320 605360 389120 393960 430000 453900 534610 439120 511990 323630 601510 39942 617190 374820 415720 437270 458030 538490 429480 494600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 347480 644790 11320 605360 389120 393960 430000 453900 534610 439120 511990 323630 601510 39942 617190 374820 415720 437270 458030 538490 429480 494600 1 1 1 1 1 1 1 1 1 1 1 75982000 60172000 15810000 15640 75 14344 80846;80847;80848 97771 97771 1 QVELALWDTAGQEDYDR Unmodified 2007.9174 0.91739917 1314;549 P08134;P62745;P61586 RHOC;RHOB;RHOA Rho-related GTP-binding protein RhoC;Rho-related GTP-binding protein RhoB;Transforming protein RhoA no no 0 0 0 0 By MS/MS 1 0 1 1 71.617 71.617 3 5.5813E-11 22873 20211116_3428_TMUAki_TMT10x_P_F1 127.32 115.18 3989500 6243200 95266 6385600 3638200 6684000 4960200 3387500 3705400 3775300 5084900 3715000 5826100 383680 6508800 3525500 6716700 4923400 3622200 3873500 3671200 4862500 2 2 1 2 2 2 2 2 2 2 2 3989500 6243200 95266 6385600 3638200 6684000 4960200 3387500 3705400 3775300 5084900 3715000 5826100 383680 6508800 3525500 6716700 4923400 3622200 3873500 3671200 4862500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 641900000 641900000 0 15641 549;1314 14345 80849 97772;97773 97772 2 QVETELFPCLR Unmodified 1390.6915 0.69148574 218 O43488;Q8NHP1;O95154 AKR7A2;AKR7L;AKR7A3 Aflatoxin B1 aldehyde reductase member 2;Aflatoxin B1 aldehyde reductase member 4;Aflatoxin B1 aldehyde reductase member 3 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 64.279 64.357 2 4.0418E-11 20268 20211116_3431_TMUAki_TMT10x_P_F4 128.03 91.701 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15642 218 14346 80850;80851 97774;97775 97774 2 QVEVELLSR Unmodified 1071.5924 0.59242362 2468 Q96G23 CERS2 Ceramide synthase 2 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 50.809 50.711 2 0.00038765 17400 20211116_3441_TMUAki_TMT10x_S_F3 125.18 67.459 23331000 37860000 226030 42172000 40664000 39991000 26183000 34829000 38054000 30317000 35579000 21724000 35343000 2144300 42685000 38624000 40759000 27683000 35537000 38106000 29795000 34399000 6 6 3 6 6 6 6 6 6 6 6 12004000 18424000 147320 20595000 27922000 28262000 15024000 16878000 18492000 14686000 17350000 11176000 17200000 1117200 20972000 26442000 28063000 16021000 17670000 18620000 14434000 16772000 3 3 1 3 3 3 3 3 3 3 3 11327000 19436000 78711 21577000 12742000 11729000 11159000 17950000 19562000 15631000 18229000 10547000 18144000 1027100 21713000 12182000 12696000 11662000 17867000 19486000 15361000 17626000 3 3 2 3 3 3 3 3 3 3 3 1216800000 709950000 506850000 15643 2468 14347 80852;80853;80854;80855;80856;80857 97776;97777;97778;97779;97780;97781 97780 6 QVEVINFGDCLVR Unmodified 1547.7766 0.77661235 1040 P46060 RANGAP1 Ran GTPase-activating protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 2 2 67.119 67.162 2 8.9845E-21 20574 20211116_3444_TMUAki_TMT10x_S_F5 199.15 117.89 16150000 26859000 88939 25771000 19150000 22502000 17866000 18381000 16628000 17323000 20806000 15036000 25058000 1298800 26318000 18324000 23033000 18151000 18865000 17119000 16962000 19941000 5 5 2 5 5 5 5 5 5 5 5 6432000 10669000 88939 10278000 6568200 11959000 7141700 7188000 6510600 6841800 8383800 5989500 9953900 618050 10538000 6317700 11972000 7194700 7538700 6717500 6696300 8029500 2 2 2 2 2 2 2 2 2 2 2 9717600 16190000 0 15492000 12582000 10544000 10724000 11193000 10118000 10481000 12422000 9046700 15104000 680740 15780000 12007000 11061000 10956000 11326000 10401000 10266000 11912000 3 3 0 3 3 3 3 3 3 3 3 2096500000 1056000000 1040500000 15644 1040 14348 80858;80859;80860;80861 97782;97783;97784;97785;97786 97785 5 QVFGEATKQPGITFIAAK Unmodified 1905.036 0.035998161 536 P07339 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes yes 0 0 0 1 By MS/MS 2 0 1 1 62.786 62.498 3 0.0002016 20715 20211116_3429_TMUAki_TMT10x_P_F2 71.742 62.488 10861000 17404000 24592 14179000 13395000 22884000 14216000 16212000 14936000 13889000 14354000 10113000 16228000 958870 14823000 12866000 22626000 14399000 16751000 15143000 13661000 13865000 1 1 1 1 1 1 1 1 1 1 1 10861000 17404000 24592 14179000 13395000 22884000 14216000 16212000 14936000 13889000 14354000 10113000 16228000 958870 14823000 12866000 22626000 14399000 16751000 15143000 13661000 13865000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 972710000 972710000 0 15645 536 14349 80862 97787 97787 1 QVGLMVQER Unmodified 1058.5543 0.55426398 1098 P49419-2;P49419;P49419-4 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 0 0 0 0 By MS/MS 4 0 1 1 38.9 39.081 2 0.088687 10479 20211116_3442_TMUAki_TMT10x_S_F4 47.706 21.483 583060 887180 0 1126800 524440 448760 440780 628060 716430 593910 806320 542870 828730 45363 1122400 500610 503020 460010 628490 719970 581450 775040 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 583060 887180 0 1126800 524440 448760 440780 628060 716430 593910 806320 542870 828730 45363 1122400 500610 503020 460010 628490 719970 581450 775040 1 1 0 1 1 1 1 1 1 1 1 12159000 0 12159000 15646 1098 14350 80863 97788 97788 1 QVHCEEFIPEFEK Unmodified 1690.7661 0.76610724 1688 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.707 1 2 1 1 3 54.458 54.35 3 0.00065297 15340 20211116_3444_TMUAki_TMT10x_S_F5 70.332 58.416 5371500 8353900 14835 8721600 8110800 8279400 5595200 6199400 5607200 5641800 6397800 5001300 7796400 464480 8864900 7712500 8415100 5807300 6391400 5731900 5533000 6147300 3 3 1 3 3 3 3 3 3 3 3 3435900 5092000 14835 5228900 6124200 6693900 3856600 3770600 3279900 3472900 3686700 3199200 4751800 326350 5346500 5815400 6663200 4012700 3972300 3376500 3404100 3543800 2 2 1 2 2 2 2 2 2 2 2 1935600 3261900 0 3492800 1986600 1585500 1738600 2428800 2327200 2168900 2711100 1802100 3044600 138130 3518400 1897100 1751800 1794700 2419100 2355400 2128900 2603400 1 1 0 1 1 1 1 1 1 1 1 608250000 388330000 219930000 15647 1688 14351 80864;80865;80866;80867 97789;97790;97791;97792;97793 97793 5 QVHPDTGISSK Unmodified 1167.5884 0.58840088 290;528;2613;2191 Q93079;Q99877;P62807;P58876;O60814;Q5QNW6;Q99879;Q5QNW6-2;P57053;P33778;Q16778;P23527;P06899;Q8N257;Q99880;Q96A08 HIST1H2BH;HIST1H2BN;HIST1H2BC;HIST1H2BD;HIST1H2BK;HIST2H2BF;HIST1H2BM;H2BFS;HIST1H2BB;HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST1H2BL;HIST1H2BA Histone H2B type 1-H;Histone H2B type 1-N;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type 2-F;Histone H2B type 1-M;Histone H2B type F-S;Histone H2B type 1-B;Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Histone H2B type 1-L;Histone H2B type 1-A no no 0 0 0 0 By MS/MS By MS/MS 3.93 1.62 2 1 1 4 5 1 6 8 28.581 28.586 2;3 7.1285E-15 6935 20211116_3433_TMUAki_TMT10x_P_F5 196.11 134.44 30803000 52363000 166020 47820000 34740000 40679000 32175000 30734000 35343000 29240000 39971000 28681000 48843000 2627700 48998000 33247000 41658000 32869000 31706000 35981000 28618000 38415000 16 16 5 16 16 16 16 16 16 16 16 7596700 12593000 21984 10511000 8392700 17847000 4411000 5539200 7047000 6709100 8214200 7073000 11743000 609890 10980000 7945200 17453000 4764000 6288000 7095100 6504300 7887800 6 6 2 6 6 6 6 6 6 6 6 23206000 39770000 144040 37308000 26347000 22832000 27764000 25195000 28296000 22530000 31756000 21608000 37100000 2017800 38018000 25302000 24205000 28105000 25418000 28886000 22114000 30527000 10 10 3 10 10 10 10 10 10 10 10 10979000000 8509600000 2469700000 15648 290;528;2191;2613 14352 80868;80869;80870;80871;80872;80873;80874;80875;80876;80877;80878;80879;80880;80881 97794;97795;97796;97797;97798;97799;97800;97801;97802;97803;97804;97805;97806;97807;97808;97809 97799 16 QVHPFHVYPQPGMQR Oxidation (M) 1835.889 0.88895677 447 O95817 BAG3 BAG family molecular chaperone regulator 3 yes yes 0 0 1 0 By MS/MS By matching 1 0 2 1 1 32.885 32.89 4 0.018592 7127 20211116_3428_TMUAki_TMT10x_P_F1 45.207 30.516 216520 294680 0 347320 506030 377080 245670 218490 246290 176530 256250 201590 275160 20746 351050 478580 378750 262830 228890 250880 174130 246890 1 1 0 1 1 1 1 1 1 1 1 216520 294680 0 347320 506030 377080 245670 218490 246290 176530 256250 201590 275160 20746 351050 478580 378750 262830 228890 250880 174130 246890 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 73053000 49088000 23966000 15649 447 14353 80882;80883 97810 97810 329 1 QVIGTGSFFPK Unmodified 1179.6288 0.62880913 1659 Q13642-1;Q13642-5;Q13642-4;Q13642;Q13642-3 FHL1 Four and a half LIM domains protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 3 2 1 62.425 62.166 2;3 2.4876E-11 20601 20211116_3429_TMUAki_TMT10x_P_F2 134.75 98.354 4476800 6573300 32087 6705600 4641300 6004800 4677500 5677800 5456000 5109300 6454400 4168600 6134100 399000 6821000 4452800 6153100 4766800 5772300 5551900 5013400 6195400 2 2 1 2 2 2 2 2 2 2 2 2456100 3167600 32087 3379500 2456000 3641900 2530700 2217100 2115300 2006500 3292600 2287100 2956500 233530 3436600 2358800 3661900 2550200 2319800 2211900 1968400 3139800 1 1 1 1 1 1 1 1 1 1 1 2020800 3405800 0 3326100 2185200 2362900 2146900 3460800 3340700 3102700 3161800 1881500 3177600 165470 3384400 2094100 2491200 2216600 3452500 3340000 3045100 3055600 1 1 0 1 1 1 1 1 1 1 1 401690000 198370000 203320000 15650 1659 14354 80884;80885;80886 97811;97812;97813 97812 3 QVIIQGFR Unmodified 959.55525 0.55525025 3219 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 3.25 2.77 1 2 1 2 2 47.905 47.744 2 0.0004159 13347 20211116_3440_TMUAki_TMT10x_S_F2 143 97.286 3700400 6155500 20730 6554500 3547200 3088000 3107200 5618800 5676200 4770000 5817600 3445500 5745200 310250 6606600 3390500 3416600 3254300 5559700 5667100 4693600 5607600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3700400 6155500 20730 6554500 3547200 3088000 3107200 5618800 5676200 4770000 5817600 3445500 5745200 310250 6606600 3390500 3416600 3254300 5559700 5667100 4693600 5607600 2 2 1 2 2 2 2 2 2 2 2 265460000 0 265460000 15651 3219 14355 80887;80888;80889;80890 97814;97815;97816;97817 97817 4 QVIQQNPALLPALLQQLGQENPQLLQQISR Unmodified 3377.8783 0.87832231 1226 P54725;P54725-3 RAD23A UV excision repair protein RAD23 homolog A yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 81.362 81.37 3 1.256E-30 27666 20211116_3442_TMUAki_TMT10x_S_F4 153.12 129.73 452340 804920 14424 629190 411680 945180 576330 541200 499420 465510 590550 421280 750420 50376 659010 399750 934310 573610 568380 514670 457760 566860 1 1 1 1 1 1 1 1 1 1 1 452340 804920 14424 629190 411680 945180 576330 541200 499420 465510 590550 421280 750420 50376 659010 399750 934310 573610 568380 514670 457760 566860 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1028400000 1028400000 0 15652 1226 14356 80891;80892 97818;97819 97819 2 QVKPYVEEGLHPQIIIR Unmodified 2018.1313 0.13129553 2609 Q99832;Q99832-3;Q99832-4 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 1 By MS/MS By MS/MS 7 0.756 2 3 2 3 4 52.157 52.395 3;4 7.8779E-22 14587 20211116_3447_TMUAki_TMT10x_S_F8 174.78 163.13 57325000 92164000 364030 113430000 81230000 76059000 60226000 55823000 52774000 53259000 72696000 53375000 86079000 5050700 113660000 77357000 79334000 61958000 57701000 54722000 52121000 69511000 10 10 6 10 10 10 10 10 10 10 10 24998000 39077000 107210 47348000 50016000 52585000 32924000 23848000 22713000 21896000 30484000 23274000 36494000 2263900 47797000 47518000 52601000 33974000 25639000 23829000 21465000 29167000 4 4 2 4 4 4 4 4 4 4 4 32327000 53087000 256820 66082000 31214000 23474000 27302000 31975000 30061000 31363000 42212000 30101000 49584000 2786900 65860000 29839000 26733000 27984000 32062000 30892000 30656000 40344000 6 6 4 6 6 6 6 6 6 6 6 9947200000 5761500000 4185700000 15653 2609 14357 80893;80894;80895;80896;80897;80898;80899 97820;97821;97822;97823;97824;97825;97826;97827;97828;97829;97830 97830 11 QVLIASHLPSYELR Unmodified 1624.8937 0.89369102 1591 Q13085;Q13085-4;Q13085-3;Q13085-2 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 0 0 0 0 By MS/MS 8 0 1 1 54.253 54.184 3 2.3144E-06 15255 20211116_3447_TMUAki_TMT10x_S_F8 107.69 77.752 2141100 4039900 62770 3834300 2137100 2495700 2063100 3639400 3242100 2959700 3372300 1994000 3768900 235950 3906100 2051100 2650700 2133100 3622200 3251300 2918600 3249100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2141100 4039900 62770 3834300 2137100 2495700 2063100 3639400 3242100 2959700 3372300 1994000 3768900 235950 3906100 2051100 2650700 2133100 3622200 3251300 2918600 3249100 1 1 1 1 1 1 1 1 1 1 1 353600000 0 353600000 15654 1591 14358 80900 97831 97831 1 QVLIRPCSK Unmodified 1099.6172 0.61719858 1339 P62244 RPS15A 40S ribosomal protein S15a yes yes 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 34.577 34.423 3 0.00014664 10733 20211116_3441_TMUAki_TMT10x_S_F3 130.94 79.673 5159700 8887300 49175 7968400 7954400 8461700 6276400 5258400 4806700 5417800 6692400 4804400 8289400 496340 8201300 7586800 8517800 6408700 5512800 5021200 5284700 6397600 4 4 2 4 4 4 4 4 4 4 4 3288000 5542600 40328 4918200 6168800 6830700 4086900 3499100 3175900 3619000 4388800 3061600 5169500 335560 5090000 5864100 6765800 4226100 3729400 3313800 3529600 4196100 2 2 1 2 2 2 2 2 2 2 2 1871600 3344700 8847.7 3050200 1785600 1631000 2189500 1759300 1630800 1798700 2303700 1742700 3119900 160780 3111300 1722700 1752000 2182500 1783500 1707400 1755100 2201400 2 2 1 2 2 2 2 2 2 2 2 232020000 161480000 70543000 15655 1339 14359 80901;80902;80903;80904 97832;97833;97834;97835;97836 97836 5 QVLLSAAEAAEVILR Unmodified 1581.909 0.90900673 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 7 0.816 2 2 2 4 2 80.458 80.453 2;3 3.0764E-27 28045 20211116_3435_TMUAki_TMT10x_P_F7 169.17 138.92 7788900 12948000 37233 11325000 9230800 13554000 10132000 9269100 9283900 10644000 10319000 7252000 12075000 635920 11702000 8871600 13574000 10204000 9681600 9518600 10339000 9922100 5 5 3 5 5 5 5 5 5 5 5 4647000 7394100 30442 6619600 4628700 9070900 5286200 5450400 5456400 6351200 5873200 4326900 6896500 396140 6844500 4455400 9008300 5332900 5751300 5558300 6165800 5652800 3 3 2 3 3 3 3 3 3 3 3 3141800 5553500 6791.5 4705700 4602200 4482700 4845500 3818700 3827500 4293100 4445500 2925000 5178800 239780 4857100 4416200 4565500 4870700 3930300 3960300 4173300 4269300 2 2 1 2 2 2 2 2 2 2 2 1389200000 680750000 708430000 15656 1429 14360 80905;80906;80907;80908;80909;80910 97837;97838;97839;97840;97841;97842;97843 97838 7 QVLRVNLEPMVRLR Oxidation (M) 1738.0036 0.0035925955 2216 Q8N9Z2 CCDC71L Coiled-coil domain-containing protein 71L yes yes 0 0 1 2 By MS/MS 2.5 0.5 1 1 2 78.494 78.436 3 0.10599 27643 20211116_3430_TMUAki_TMT10x_P_F3 45.863 16.058 2451000 4059800 0 3991100 2440100 3844400 2561000 1960500 2434100 2158000 2765700 2282000 3788000 183610 4074200 2341400 3883200 2587500 2094300 2493600 2099500 2657700 1 1 0 1 1 1 1 1 1 1 1 2451000 4059800 0 3991100 2440100 3844400 2561000 1960500 2434100 2158000 2765700 2282000 3788000 183610 4074200 2341400 3883200 2587500 2094300 2493600 2099500 2657700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 913390000 913390000 0 15657 2216 14361 80911;80912 97844 97844 2631 1 QVMVVPVGPTCDEYAQK Oxidation (M) 1935.907 0.90703418 819 P26639;P26639-2 TARS Threonine--tRNA ligase, cytoplasmic yes no 0 0 1 0 By MS/MS By matching 5.5 0.5 1 1 1 1 53.152 53.312 3 0.00039603 15966 20211116_3433_TMUAki_TMT10x_P_F5 65.298 54.193 4903800 8206000 30243 8819500 9398800 11742000 6411200 6991600 7294600 6543700 6856000 4566100 7659300 497700 8997700 8938700 11675000 6686700 7334900 7366800 6409400 6627300 2 2 2 2 2 2 2 2 2 2 2 4903800 8206000 30243 8819500 9398800 11742000 6411200 6991600 7294600 6543700 6856000 4566100 7659300 497700 8997700 8938700 11675000 6686700 7334900 7366800 6409400 6627300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 559830000 367410000 192420000 15658 819 14362 80913;80914 97845;97846 97845 981 2 QVMVVPVGPTCDEYAQK Unmodified 1919.9121 0.91211956 819 P26639;P26639-2 TARS Threonine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS 5 0 1 1 59.557 59.732 3 0.10528 18607 20211116_3433_TMUAki_TMT10x_P_F5 27.714 19.989 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15659 819 14362 80915 97847 97847 1 QVNELVR Unmodified 856.47667 0.47666558 1770 Q15102 PAFAH1B3 Platelet-activating factor acetylhydrolase IB subunit gamma yes yes 0 0 0 0 By MS/MS 3 0 1 1 33.922 33.682 2 0.012303 10488 20211116_3441_TMUAki_TMT10x_S_F3 96.19 5.4138 633790 1029600 0 1062000 648360 597450 771170 618750 749650 605950 865170 590100 960860 49271 1074200 624540 637780 775140 627640 767680 592330 831020 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 633790 1029600 0 1062000 648360 597450 771170 618750 749650 605950 865170 590100 960860 49271 1074200 624540 637780 775140 627640 767680 592330 831020 1 1 0 1 1 1 1 1 1 1 1 21460000 0 21460000 15660 1770 14363 80916 97848 97848 1 QVNITVQK Unmodified 928.53418 0.53418046 3047 Q9P035 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes yes 0 0 0 0 By MS/MS By MS/MS 6 2.16 1 1 1 1 2 40.026 40.08 2 0.0020296 10015 20211116_3447_TMUAki_TMT10x_S_F8 130.56 82.988 302360 441440 2319.3 534280 515530 601640 358910 308350 337140 299760 386310 281540 412260 30215 539500 490520 602170 371570 328050 345680 293120 371140 1 1 1 1 1 1 1 1 1 1 1 302360 441440 2319.3 534280 515530 601640 358910 308350 337140 299760 386310 281540 412260 30215 539500 490520 602170 371570 328050 345680 293120 371140 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7786700 7786700 0 15661 3047 14364 80917;80918;80919 97849;97850;97851 97851 3 QVNITVQKK Unmodified 1056.6291 0.62914348 3047 Q9P035 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes yes 0 0 0 1 By MS/MS By MS/MS 1.8 0.748 2 2 1 1 4 32.144 32.102 3 0.039375 11949 20211116_3441_TMUAki_TMT10x_S_F3 55.718 41.909 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15662 3047 14365 80920;80921;80922;80923;80924 97852;97853;97854;97855;97856 97856 5 QVPFNEVR Unmodified 987.51378 0.51377937 1148 P51114;P51114-2 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 38.444 38.555 2 0.01177 9825 20211116_3442_TMUAki_TMT10x_S_F4 80.676 39.247 3644100 5044600 88812 6548600 7444500 6219400 4135500 4485800 4985000 4139300 5081600 3393600 4712800 438120 6569500 7060300 6317300 4394100 4638000 5037600 4056900 4899000 3 3 3 3 3 3 3 3 3 3 3 2395700 3247700 65089 4239900 6367800 5410000 3080000 3081500 3445100 2843100 3406600 2231100 3034100 314910 4272800 6027100 5386800 3307400 3243500 3487500 2786600 3287400 1 1 1 1 1 1 1 1 1 1 1 1248400 1796900 23724 2308700 1076600 809450 1055500 1404300 1539800 1296100 1675000 1162500 1678600 123200 2296700 1033200 930450 1086800 1394500 1550100 1270300 1611600 2 2 2 2 2 2 2 2 2 2 2 225540000 173480000 52059000 15663 1148 14366 80925;80926;80927 97857;97858;97859 97858 3 QVPNESFFNFFNPLK Unmodified 1826.8992 0.89917033 2602 Q99733;Q99733-2 NAP1L4 Nucleosome assembly protein 1-like 4 yes no 0 0 0 0 By MS/MS By MS/MS 3 0.707 3 6 3 7 5 82.744 82.716 2;3 1.3267E-37 28378 20211116_3430_TMUAki_TMT10x_P_F3 248.21 198.86 53481000 91650000 582460 83662000 72330000 72222000 71828000 51470000 49809000 56443000 66273000 49800000 85489000 3924200 85742000 69369000 73814000 72203000 53528000 52220000 54920000 63421000 12 12 8 12 12 12 12 12 12 12 12 17286000 26773000 201460 24691000 16052000 28813000 19276000 16781000 16283000 17732000 19592000 16096000 24974000 1603600 25398000 15485000 28828000 19291000 17697000 16813000 17278000 18798000 4 4 4 4 4 4 4 4 4 4 4 36195000 64877000 381000 58971000 56277000 43409000 52552000 34690000 33527000 38712000 46681000 33703000 60515000 2320600 60344000 53884000 44986000 52911000 35830000 35407000 37642000 44624000 8 8 4 8 8 8 8 8 8 8 8 13216000000 5566500000 7649800000 15664 2602 14367 80928;80929;80930;80931;80932;80933;80934;80935;80936;80937;80938;80939 97860;97861;97862;97863;97864;97865;97866;97867;97868;97869;97870;97871;97872;97873 97862 14 QVQHEESTEGEADHSGYAGELGFR Unmodified 2632.1426 0.14260109 2374 Q92890;Q92890-1;Q92890-3 UFD1L Ubiquitin fusion degradation protein 1 homolog yes no 0 0 0 0 By MS/MS By MS/MS 2 0.894 2 1 2 3 2 37.219 37.113 4 9.6122E-74 10790 20211116_3439_TMUAki_TMT10x_S_F1 256.4 241.14 1849400 2944400 0 3838400 5104200 3714500 2408800 2377800 2795300 2114800 2755400 1721600 2750800 151060 3850800 4823300 3761700 2596300 2477100 2825400 2076200 2659300 7 7 0 7 7 7 7 7 7 7 7 1144900 1817900 0 2536300 4461300 3164700 1842400 1562200 1881400 1385000 1771300 1065600 1698900 96195 2546100 4208900 3149200 2006900 1663900 1908400 1359900 1712100 5 5 0 5 5 5 5 5 5 5 5 704570 1126600 0 1302100 642920 549880 566470 815570 913880 729780 984160 656000 1051900 54867 1304700 614360 612550 589350 813240 917010 716280 947210 2 2 0 2 2 2 2 2 2 2 2 748040000 554000000 194040000 15665 2374 14368 80940;80941;80942;80943;80944 97874;97875;97876;97877;97878;97879;97880 97879 7 QVQHILASASPSGR Unmodified 1449.7688 0.76882486 401 O94979;O94979-9;O94979-6;O94979-3;O94979-10;O94979-4;O94979-2;O94979-8;O94979-5 SEC31A Protein transport protein Sec31A yes no 0 0 0 0 By matching By MS/MS 1 0 2 1 1 34.734 34.729 3 7.5011E-05 9832 20211116_3439_TMUAki_TMT10x_S_F1 91.812 68.586 189210 289060 0 361390 200990 162940 170440 224090 256320 209270 285390 176160 269990 14367 360600 191850 179610 177140 224310 258040 204990 274410 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 189210 289060 0 361390 200990 162940 170440 224090 256320 209270 285390 176160 269990 14367 360600 191850 179610 177140 224310 258040 204990 274410 1 1 0 1 1 1 1 1 1 1 1 70216000 40493000 29723000 15666 401 14369 80945;80946 97881 97881 1 QVQPEGPYR Unmodified 1072.5302 0.53015772 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 31.458 31.349 2 5.9083E-06 9574 20211116_3441_TMUAki_TMT10x_S_F3 181.69 130.79 767730 1327800 19174 1227400 1305700 1173800 838470 743050 804730 700870 999720 714970 1238600 89054 1258400 1241400 1189400 873880 775960 827070 686250 958350 2 2 2 2 2 2 2 2 2 2 2 459990 760190 14281 713020 974840 919980 511160 494010 540600 467670 589120 428410 709160 58657 733830 923930 914880 543640 522980 550400 457830 566800 1 1 1 1 1 1 1 1 1 1 1 307730 567660 4893.1 514340 330860 253840 327310 249040 264130 233210 410600 286570 529490 30397 524590 317450 274550 330240 252970 276670 228410 391560 1 1 1 1 1 1 1 1 1 1 1 51422000 21792000 29629000 15667 1092 14370 80947;80948 97882;97883 97883 2 QVRPVTEKLPANHPLLTGQR Unmodified 2253.2706 0.27058298 971 P38606;P38606-2 ATP6V1A V-type proton ATPase catalytic subunit A yes no 0 0 0 2 By MS/MS 4 0 1 1 36.604 36.632 5 0.0067952 9051 20211116_3431_TMUAki_TMT10x_P_F4 54.834 43.89 638560 1036200 68993 1050000 2580000 2259300 1290100 1509200 1220300 1107900 1307800 595080 966930 144430 1088300 2445600 2210200 1373900 1560300 1247600 1098600 1258900 1 1 1 1 1 1 1 1 1 1 1 638560 1036200 68993 1050000 2580000 2259300 1290100 1509200 1220300 1107900 1307800 595080 966930 144430 1088300 2445600 2210200 1373900 1560300 1247600 1098600 1258900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 105090000 105090000 0 15668 971 14371 80949 97884 97884 1 QVSDDLTER Unmodified 1061.4989 0.49891717 924 P35232 PHB Prohibitin yes yes 0 0 0 0 By matching By MS/MS 1 0 2 1 1 33.047 33.052 2 0.00014314 9153 20211116_3439_TMUAki_TMT10x_S_F1 137.85 94.402 380150 632200 319.24 612780 444470 338490 424930 326970 355320 317550 489170 353960 589840 32716 622400 425710 361490 429890 332740 369270 310520 467750 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 380150 632200 319.24 612780 444470 338490 424930 326970 355320 317550 489170 353960 589840 32716 622400 425710 361490 429890 332740 369270 310520 467750 1 1 1 1 1 1 1 1 1 1 1 25802000 8200700 17602000 15669 924 14372 80950;80951 97885 97885 1 QVSDLISVLR Unmodified 1128.6503 0.65027285 710 P17844;P17844-2 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 2 3 69.424 69.549 2 5.336E-11 23360 20211116_3435_TMUAki_TMT10x_P_F7 208.63 134.96 56663000 95741000 203650 86072000 69501000 78743000 61592000 71191000 66149000 62561000 74859000 52755000 89301000 4403600 88381000 66411000 80500000 63030000 72505000 67405000 61456000 71944000 5 5 3 5 5 5 5 5 5 5 5 22048000 33833000 38440 32142000 24313000 41767000 24506000 24546000 24796000 23168000 26024000 20528000 31564000 1653300 33053000 23304000 41569000 24856000 25784000 25256000 22683000 25066000 2 2 1 2 2 2 2 2 2 2 2 34614000 61908000 165210 53930000 45188000 36976000 37086000 46646000 41353000 39393000 48836000 32227000 57737000 2750400 55327000 43108000 38932000 38174000 46721000 42149000 38772000 46878000 3 3 2 3 3 3 3 3 3 3 3 7505700000 3649400000 3856400000 15670 710 14373 80952;80953;80954;80955;80956 97886;97887;97888;97889;97890 97886 5 QVSIEEGER Unmodified 1045.504 0.50400254 742;743 P20340;P20340-2;P20340-4;Q53S08 RAB6A;RAB6C Ras-related protein Rab-6A no no 0 0 0 0 By matching By MS/MS 1 0 2 1 1 31.902 31.917 2 0.011647 8717 20211116_3439_TMUAki_TMT10x_S_F1 67.113 31.233 148330 226470 0 259890 168660 171250 170860 223450 232110 198870 236840 138090 211450 10592 261440 161650 181100 175090 223820 233620 195240 228320 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 148330 226470 0 259890 168660 171250 170860 223450 232110 198870 236840 138090 211450 10592 261440 161650 181100 175090 223820 233620 195240 228320 1 1 0 1 1 1 1 1 1 1 1 15477000 6120500 9356800 15671 742;743 14374 80957;80958 97891 97891 1 QVSIEEGERK Unmodified 1173.599 0.59896556 742;743 P20340;P20340-2;P20340-4;Q53S08 RAB6A;RAB6C Ras-related protein Rab-6A no no 0 0 0 1 By MS/MS 3 0 1 1 31.894 31.649 3 0.035395 9681 20211116_3441_TMUAki_TMT10x_S_F3 56.02 37.275 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15672 742;743 14375 80959 97892 97892 1 QVTESVSDSITVLP Unmodified 1473.7563 0.75625407 300 O60888;O60888-3;O60888-2 CUTA Protein CutA yes no 0 0 0 0 By MS/MS 3 0 1 1 73.25 72.937 2 3.8263E-09 26448 20211116_3441_TMUAki_TMT10x_S_F3 106.62 88.887 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15673 300 14376 80960 97893 97893 1 QVTITGSAASISLAQYLINAR Unmodified 2176.1852 0.18518159 1791 Q15365 PCBP1 Poly(rC)-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 7 2 5 78.965 78.979 3 2.5587E-55 25407 20211116_3444_TMUAki_TMT10x_S_F5 223.18 191.76 6308700 11053000 177390 9897500 7510200 8882400 7630100 6447500 6218500 7074900 7905100 5875100 10309000 682010 10164000 7213300 9056700 7689600 6697100 6447900 6883900 7573500 3 3 2 3 3 3 3 3 3 3 3 2083000 3283700 0 3116800 1886100 3456600 2023700 2212300 2097600 2235700 2178000 1939300 3063400 146760 3196500 1810400 3472400 2047800 2312800 2133600 2182500 2098600 1 1 0 1 1 1 1 1 1 1 1 4225700 7769400 177390 6780800 5624100 5425800 5606400 4235300 4120900 4839200 5727000 3935900 7246000 535250 6967100 5402900 5584300 5641800 4384300 4314300 4701400 5474900 2 2 2 2 2 2 2 2 2 2 2 2097100000 787200000 1309900000 15674 1791 14377 80961;80962;80963;80964;80965;80966;80967 97894;97895;97896;97897;97898;97899;97900;97901 97897 8 QVVESAYEVIK Unmodified 1263.6711 0.67106787 462 P00338;P00338-3;P00338-4 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 0 By MS/MS By MS/MS 4.5 1.12 4 4 4 4 8 8 58.253 58.229 2;3 3.0974E-20 18202 20211116_3442_TMUAki_TMT10x_S_F4 237.84 174.36 125980000 193480000 1229200 251660000 146840000 159570000 118380000 117890000 124120000 119040000 145550000 117310000 180760000 11315000 251250000 140120000 167300000 121740000 122000000 126780000 116210000 139740000 20 20 11 20 20 20 20 20 20 20 20 58478000 89086000 916140 116510000 103340000 114350000 71934000 55411000 57842000 55677000 66850000 54455000 83229000 6215800 116890000 98346000 115300000 74171000 59320000 59780000 54366000 64209000 10 10 7 10 10 10 10 10 10 10 10 67507000 104400000 313070 135150000 43504000 45216000 46445000 62475000 66283000 63363000 78702000 62854000 97529000 5098800 134360000 41777000 51998000 47572000 62676000 67004000 61847000 75536000 10 10 4 10 10 10 10 10 10 10 10 14835000000 7855300000 6979300000 15675 462 14378 80968;80969;80970;80971;80972;80973;80974;80975;80976;80977;80978;80979;80980;80981;80982;80983 97902;97903;97904;97905;97906;97907;97908;97909;97910;97911;97912;97913;97914;97915;97916;97917;97918;97919;97920;97921 97915 20 QVVNFGPGPAK Unmodified 1112.5978 0.59784335 3335 Q9Y617;Q9Y617-2 PSAT1 Phosphoserine aminotransferase yes no 0 0 0 0 By MS/MS By MS/MS 6.6 2.8 1 4 2 3 46.803 46.773 2;3 1.253E-14 12343 20211116_3447_TMUAki_TMT10x_S_F8 193.1 146.21 10655000 16204000 33244 19420000 20091000 18607000 12830000 15041000 17427000 14196000 16551000 9920300 15132000 975380 19572000 19079000 18926000 13536000 15447000 17497000 13900000 15993000 7 7 2 7 7 7 7 7 7 7 7 5171600 7468400 4418.2 8629400 15639000 13580000 7795300 6961700 8197800 6627600 7772800 4815000 6973200 546070 8795400 14796000 13381000 8329700 7402200 8307200 6486600 7511300 3 3 1 3 3 3 3 3 3 3 3 5483200 8735700 28825 10790000 4452300 5026900 5034700 8079100 9229000 7568600 8778400 5105300 8159000 429310 10777000 4283000 5545100 5206300 8044900 9189400 7412900 8482200 4 4 1 4 4 4 4 4 4 4 4 829860000 441140000 388720000 15676 3335 14379 80984;80985;80986;80987;80988 97922;97923;97924;97925;97926;97927;97928 97927 7 QVVNFGPGPAKLPHSVLLEIQK Unmodified 2370.3424 0.34235094 3335 Q9Y617;Q9Y617-2 PSAT1 Phosphoserine aminotransferase yes no 0 0 0 1 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 66.881 66.572 4 2.0718E-26 23971 20211116_3441_TMUAki_TMT10x_S_F3 164.35 141.92 6821900 11955000 100770 8493000 12309000 13601000 9377300 14498000 12209000 11254000 11568000 6352400 11142000 712390 8985100 11733000 13561000 9752800 14598000 12274000 11125000 11179000 3 3 2 3 3 3 3 3 3 3 3 2542200 4400400 81750 3329500 3756300 8067300 4379700 5715400 5043200 4216500 4122900 2367700 4102000 303960 3543100 3622300 7873400 4430500 5884900 5068900 4179800 4005700 1 1 1 1 1 1 1 1 1 1 1 4279600 7554400 19020 5163500 8552800 5533500 4997600 8782800 7165800 7037300 7445400 3984700 7040200 408430 5442000 8111100 5687400 5322300 8713500 7205000 6944900 7173600 2 2 1 2 2 2 2 2 2 2 2 2045700000 551680000 1494000000 15677 3335 14380 80989;80990;80991 97929;97930;97931 97930 3 QVVNIPSFIVR Unmodified 1270.7398 0.73975656 1054 P46781 RPS9 40S ribosomal protein S9 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.707 2 4 2 4 4 68.071 67.784 2;3 2.6325E-19 24348 20211116_3441_TMUAki_TMT10x_S_F3 235.32 189.6 33528000 55100000 164350 51510000 39747000 54622000 38089000 37645000 33615000 35793000 42224000 31218000 51401000 2835600 52849000 38067000 55071000 38584000 39076000 34698000 35033000 40466000 8 8 4 8 8 8 8 8 8 8 8 21480000 34530000 96781 32249000 24930000 43497000 25651000 23840000 21405000 22775000 26636000 20000000 32211000 1809400 33229000 23921000 43176000 25850000 25199000 22147000 22287000 25533000 5 5 3 5 5 5 5 5 5 5 5 12048000 20570000 67573 19261000 14817000 11124000 12438000 13804000 12210000 13018000 15588000 11218000 19190000 1026200 19620000 14146000 11895000 12733000 13877000 12551000 12746000 14932000 3 3 1 3 3 3 3 3 3 3 3 7338800000 3574000000 3764800000 15678 1054 14381 80992;80993;80994;80995;80996;80997;80998;80999 97932;97933;97934;97935;97936;97937;97938;97939;97940;97941;97942 97940 11 QVVQGLLSETYLEAHR Unmodified 1841.9636 0.9635615 913 P33993;P33993-3;P33993-2 MCM7 DNA replication licensing factor MCM7 yes no 0 0 0 0 By MS/MS By MS/MS 6.71 1.03 1 2 2 2 3 4 61.919 62.178 3 1.299E-35 18450 20211116_3434_TMUAki_TMT10x_P_F6 204.52 181.63 39110000 65251000 625410 63465000 44658000 55203000 43833000 46436000 40552000 44129000 51235000 36417000 60880000 3569800 64748000 42815000 56550000 44403000 47586000 41778000 43194000 49093000 8 8 6 8 8 8 8 8 8 8 8 15691000 27562000 94590 23842000 18421000 31443000 20168000 18919000 16478000 18251000 19369000 14610000 25705000 1366400 24699000 17708000 31282000 20251000 19848000 17027000 17853000 18595000 3 3 2 3 3 3 3 3 3 3 3 23419000 37689000 530820 39623000 26237000 23761000 23666000 27517000 24075000 25878000 31866000 21807000 35175000 2203400 40048000 25107000 25269000 24152000 27738000 24750000 25341000 30499000 5 5 4 5 5 5 5 5 5 5 5 8369000000 3642300000 4726800000 15679 913 14382 81000;81001;81002;81003;81004;81005;81006 97943;97944;97945;97946;97947;97948;97949;97950;97951;97952 97943 10 QVVQTPNTVLSTPFR Unmodified 1685.9101 0.91006937 2574 Q99459 CDC5L Cell division cycle 5-like protein yes yes 0 0 0 0 By MS/MS By MS/MS 1.75 0.433 1 3 3 1 58.768 58.583 2;3 2.9237E-33 17866 20211116_3440_TMUAki_TMT10x_S_F2 225.33 192.92 7966100 11956000 120190 13407000 10184000 14233000 8585500 10047000 9618900 9302700 10610000 7417900 11161000 773410 13587000 9730200 14355000 8824300 10404000 9775500 9116100 10204000 3 3 2 3 3 3 3 3 3 3 3 6130500 8807200 120190 10065000 8149500 12466000 7046100 7478100 7048300 6840600 7916100 5709000 8222700 648550 10215000 7793700 12439000 7205000 7835800 7201100 6707200 7609500 2 2 2 2 2 2 2 2 2 2 2 1835600 3148600 0 3341800 2034700 1767500 1539400 2568600 2570600 2462100 2693600 1708900 2938700 124860 3372000 1936500 1915700 1619300 2567900 2574400 2409000 2594600 1 1 0 1 1 1 1 1 1 1 1 1371600000 1122400000 249200000 15680 2574 14383 81007;81008;81009;81010 97953;97954;97955 97955 3 QVVSASYNSPIGLYSTSNIQDALHGQLR Unmodified 3017.5207 0.52066225 1904 Q53GG5-2;Q53GG5-3 PDLIM3 PDZ and LIM domain protein 3 yes no 0 0 0 0 By MS/MS 2 0 1 1 71.929 71.79 4 0.0028736 23180 20211116_3440_TMUAki_TMT10x_S_F2 50.493 37.435 3621900 6456900 318120 7474300 3638100 3394100 4601100 2762000 2767900 3065300 4714900 3374700 6028800 596990 7492200 3531900 3695100 4560000 2849200 2965200 2981300 4488000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3621900 6456900 318120 7474300 3638100 3394100 4601100 2762000 2767900 3065300 4714900 3374700 6028800 596990 7492200 3531900 3695100 4560000 2849200 2965200 2981300 4488000 1 1 1 1 1 1 1 1 1 1 1 483230000 0 483230000 15681 1904 14384 81011 97956 97956 1 QVVTGTVLTR Unmodified 1072.6241 0.6240581 2329 Q8WYP5;Q8WYP5-2;Q8WYP5-3 AHCTF1 Protein ELYS yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 37.995 38.352 2 0.0021435 8788 20211116_3447_TMUAki_TMT10x_S_F8 82.261 44.023 618000 970550 2697.7 1050500 889760 775110 561990 650920 691180 552520 773510 575420 905930 54614 1061900 844870 803830 591190 665130 700430 543670 743630 2 2 1 2 2 2 2 2 2 2 2 281790 443500 0 494890 597290 536000 290940 303190 334490 266200 356650 262350 414020 24838 501860 564820 538280 312480 318900 339160 261510 343360 1 1 0 1 1 1 1 1 1 1 1 336220 527050 2697.7 555620 292460 239110 271050 347730 356690 286320 416870 313070 491900 29776 560070 280050 265550 278710 346230 361260 282160 400270 1 1 1 1 1 1 1 1 1 1 1 21511000 14355000 7155200 15682 2329 14385 81012;81013 97957;97958 97958 2 QVYDGFSFIGNTGPYEVSK Unmodified 2106.9898 0.98983583 2587 Q99598 TSNAX Translin-associated protein X yes yes 0 0 0 0 By MS/MS 7 0 1 1 76.706 76.815 3 0.0080597 26475 20211116_3435_TMUAki_TMT10x_P_F7 48.315 37.681 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15683 2587 14386 81014 97959 97959 1 QVYEEEYGSSLEDDVVGDTSGYYQR Unmodified 2887.2308 0.23080697 564 P08758 ANXA5 Annexin A5 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 3 2 1 69.507 69.423 2;3 4.2137E-45 22045 20211116_3428_TMUAki_TMT10x_P_F1 200.77 200.58 9877100 17128000 269370 16085000 12675000 16398000 12479000 12056000 12136000 12169000 13654000 9198500 15978000 1103400 16488000 12165000 16588000 12658000 12480000 12415000 11880000 13124000 6 6 5 6 6 6 6 6 6 6 6 4283500 7521700 144440 7096800 4352700 8916500 5412600 4748800 4667500 5006500 5809900 3989400 7017000 485020 7297100 4208600 8877600 5411800 5046300 4821500 4879000 5569200 3 3 2 3 3 3 3 3 3 3 3 5593600 9606300 124930 8988400 8322700 7481100 7066600 7307400 7468600 7162200 7843600 5209100 8961400 618400 9190800 7956200 7710300 7246100 7434100 7593700 7000900 7554800 3 3 3 3 3 3 3 3 3 3 3 2319100000 1101000000 1218200000 15684 564 14387 81015;81016;81017 97960;97961;97962;97963;97964;97965;97966 97963 7 QWLQEIDRYASENVNK Unmodified 1991.9701 0.97010344 2781;1367 P62820;P62820-2;Q9H0U4 RAB1A;RAB1B Ras-related protein Rab-1A;Ras-related protein Rab-1B no no 0 0 0 1 By MS/MS By MS/MS 7.33 0.745 1 2 3 3 3 69.732 69.842 3 4.5228E-21 23936 20211116_3446_TMUAki_TMT10x_S_F7 163.51 141.35 61534000 101510000 640420 103200000 79225000 68280000 71447000 38389000 33836000 41119000 65917000 57296000 94722000 5683400 104640000 75791000 71041000 71714000 40622000 37206000 40046000 62594000 11 11 6 11 11 11 11 11 11 11 11 24831000 40631000 241210 40053000 28379000 35925000 31195000 13316000 12370000 15352000 25642000 23122000 37911000 2297300 40840000 27295000 36345000 30913000 14740000 13879000 14909000 24325000 4 4 3 4 4 4 4 4 4 4 4 36703000 60874000 399210 63147000 50845000 32355000 40252000 25074000 21466000 25767000 40275000 34175000 56811000 3386100 63799000 48496000 34697000 40801000 25882000 23327000 25137000 38270000 7 7 3 7 7 7 7 7 7 7 7 3822900000 1749800000 2073100000 15685 1367;2781 14388 81018;81019;81020;81021;81022;81023 97967;97968;97969;97970;97971;97972;97973;97974;97975;97976;97977;97978 97974 12 QWVAAGGHITFK Unmodified 1313.6881 0.68805534 2949 Q9NTZ6 RBM12 RNA-binding protein 12 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 51.349 51.109 3 0.002157 17615 20211116_3441_TMUAki_TMT10x_S_F3 67.115 51.359 4114100 6680700 93374 7412000 5516800 6140100 4681000 4570500 4440200 4149500 5789400 3831300 6236500 447750 7490800 5274400 6298300 4784400 4713600 4575600 4070000 5543100 2 2 2 2 2 2 2 2 2 2 2 2337500 3568500 42431 3972900 3718800 4551000 3003600 2439600 2420200 2169600 3116200 2176700 3331300 252680 4033100 3550400 4553100 3066000 2578900 2512400 2130100 2984500 1 1 1 1 1 1 1 1 1 1 1 1776600 3112200 50943 3439100 1798000 1589100 1677400 2130900 2020000 1979900 2673300 1654600 2905200 195070 3457700 1724100 1745200 1718400 2134700 2063200 1939900 2558600 1 1 1 1 1 1 1 1 1 1 1 402170000 303120000 99053000 15686 2949 14389 81024;81025;81026 97979;97980 97980 2 QWYESHYALPLGR Unmodified 1618.7892 0.78922595 1338 P62241 RPS8 40S ribosomal protein S8 yes yes 0 0 0 0 By MS/MS By MS/MS 6.14 2.36 1 1 2 3 3 4 54.378 54.659 2;3 8.7411E-15 17158 20211116_3435_TMUAki_TMT10x_P_F7 166.62 152.41 32906000 55489000 371120 61290000 38036000 38593000 34699000 32173000 30243000 31472000 38212000 30637000 51799000 2566600 61777000 36372000 40572000 35234000 33014000 31245000 30766000 36616000 8 8 4 8 8 8 8 8 8 8 8 10401000 17363000 93043 19026000 16575000 20391000 14594000 9460000 9754300 10199000 11921000 9684400 16208000 954330 19313000 15843000 20443000 14757000 10192000 10212000 9930800 11433000 3 3 2 3 3 3 3 3 3 3 3 22505000 38126000 278080 42264000 21461000 18202000 20105000 22713000 20489000 21273000 26292000 20952000 35591000 1612200 42464000 20529000 20129000 20476000 22822000 21033000 20836000 25183000 5 5 2 5 5 5 5 5 5 5 5 5527100000 3509900000 2017200000 15687 1338 14390 81027;81028;81029;81030;81031;81032;81033 97981;97982;97983;97984;97985;97986;97987;97988;97989;97990 97981 10 QYADVEGF Unmodified 927.39741 0.39741221 1329;1330 P61978-2;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 58.715 58.554 2 0.014719 17540 20211116_3428_TMUAki_TMT10x_P_F1 77.674 66.801 10386000 14842000 113830 17374000 13660000 15379000 11192000 11051000 11132000 10516000 14135000 9670200 13859000 938610 17516000 13038000 15693000 11480000 11439000 11434000 10292000 13542000 3 3 2 3 3 3 3 3 3 3 3 6631600 9262800 113830 10608000 10379000 12538000 7925300 7233600 7193800 6840700 9669300 6175500 8648200 708370 10756000 9896700 12535000 8144600 7610600 7438300 6697200 9251000 2 2 2 2 2 2 2 2 2 2 2 3754000 5579300 0 6766300 3281600 2840600 3267000 3817700 3938300 3674900 4465300 3494700 5210500 230240 6760200 3141400 3157900 3335400 3828000 3995900 3595000 4291200 1 1 0 1 1 1 1 1 1 1 1 1007600000 807950000 199660000 15688 1329;1330 14391 81034;81035;81036 97991;97992;97993 97991 3 QYGNEVFLAK Unmodified 1167.5924 0.59242362 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 53.761 53.906 2 3.6654E-07 16201 20211116_3433_TMUAki_TMT10x_P_F5 159.11 109.4 35133000 52713000 100220 68915000 71101000 60764000 41593000 43716000 43377000 38087000 48939000 32713000 49248000 3432700 69039000 67434000 62022000 43788000 45140000 44248000 37429000 47038000 5 5 3 5 5 5 5 5 5 5 5 20983000 30619000 37620 39714000 57851000 51348000 31999000 25020000 25255000 21848000 28807000 19537000 28604000 2213800 40046000 54818000 51001000 33601000 26673000 26114000 21468000 27679000 3 3 1 3 3 3 3 3 3 3 3 14151000 22095000 62600 29201000 13250000 9415700 9593600 18696000 18122000 16239000 20132000 13176000 20643000 1218900 28992000 12616000 11021000 10186000 18467000 18134000 15961000 19359000 2 2 2 2 2 2 2 2 2 2 2 2243000000 1237200000 1005800000 15689 1146 14392 81037;81038;81039;81040 97994;97995;97996;97997;97998 97994 5 QYIISEELISEGK Unmodified 1507.777 0.77698951 3157 Q9UKK9 NUDT5 ADP-sugar pyrophosphatase yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 1.03 2 3 4 3 6 6 66.917 66.749 2;3 8.945E-30 22979 20211116_3430_TMUAki_TMT10x_P_F3 249.2 194.13 69839000 115950000 622170 112020000 85716000 115630000 83776000 75692000 69947000 75538000 85592000 65028000 108180000 6210000 114610000 82152000 116680000 84651000 78970000 72319000 73781000 82083000 15 15 7 15 15 15 15 15 15 15 15 44182000 71684000 424010 69524000 54220000 89206000 56187000 47016000 43037000 47456000 52520000 41139000 66881000 3951500 71373000 52048000 88715000 56483000 49945000 44695000 46330000 50370000 9 9 4 9 9 9 9 9 9 9 9 25657000 44267000 198160 42492000 31496000 26427000 27590000 28677000 26909000 28082000 33072000 23890000 41299000 2258400 43234000 30105000 27964000 28169000 29025000 27624000 27451000 31713000 6 6 3 6 6 6 6 6 6 6 6 6845400000 3539000000 3306400000 15690 3157 14393 81041;81042;81043;81044;81045;81046;81047;81048;81049;81050;81051;81052 97999;98000;98001;98002;98003;98004;98005;98006;98007;98008;98009;98010;98011;98012;98013;98014;98015 98004 17 QYKIPDWFLNR Unmodified 1478.767 0.76703394 1345 P62269 RPS18 40S ribosomal protein S18 yes yes 0 0 0 1 By MS/MS 3 0 1 1 67.311 66.849 3 0.0027839 23986 20211116_3441_TMUAki_TMT10x_S_F3 72.705 51.404 9134700 17170000 25022 12892000 28607000 8815900 10005000 11122000 7613900 9223700 13887000 8505500 16005000 1048400 13393000 26963000 9284300 11047000 11134000 8073000 9086500 13202000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9134700 17170000 25022 12892000 28607000 8815900 10005000 11122000 7613900 9223700 13887000 8505500 16005000 1048400 13393000 26963000 9284300 11047000 11134000 8073000 9086500 13202000 2 2 1 2 2 2 2 2 2 2 2 539580000 0 539580000 15691 1345 14394 81053 98016;98017 98016 2 QYNGVPLDGRPMNIQLVTSQIDAQR Unmodified 2812.429 0.42901047 2113 Q86V81 ALYREF THO complex subunit 4 yes yes 0 0 0 1 By MS/MS By MS/MS 5.86 3.09 2 1 4 4 3 67.139 67.122 3;4 7.4559E-73 21073 20211116_3436_TMUAki_TMT10x_P_F8 242.05 230.26 52209000 81184000 97152 84381000 54080000 62009000 59314000 32159000 29049000 36960000 54060000 48607000 75766000 3754600 85523000 51947000 63880000 58954000 34347000 31765000 35899000 51375000 13 13 3 13 13 13 13 13 13 13 13 26063000 39961000 47126 41430000 25605000 37483000 31217000 15162000 12597000 17534000 25463000 24264000 37293000 1680100 42102000 24662000 37927000 30795000 16613000 14087000 17027000 24165000 7 7 2 7 7 7 7 7 7 7 7 26146000 41224000 50026 42952000 28475000 24526000 28097000 16997000 16452000 19425000 28597000 24343000 38473000 2074500 43420000 27285000 25953000 28160000 17734000 17678000 18872000 27210000 6 6 1 6 6 6 6 6 6 6 6 8388400000 4548300000 3840100000 15692 2113 14395 81054;81055;81056;81057;81058;81059;81060 98018;98019;98020;98021;98022;98023;98024;98025;98026;98027;98028;98029;98030;98031 98022 14 QYNGVPLDGRPMNIQLVTSQIDAQR Oxidation (M) 2828.4239 0.42392509 2113 Q86V81 ALYREF THO complex subunit 4 yes yes 0 0 1 1 By MS/MS By MS/MS 7.33 0.667 1 4 4 5 4 58.969 59.323 3;4 1.9083E-22 17281 20211116_3447_TMUAki_TMT10x_S_F8 143.47 131.35 50712000 86231000 910640 79519000 60264000 93273000 61929000 80446000 80123000 78319000 74215000 47222000 80438000 4248400 81802000 57856000 93883000 63293000 82375000 80505000 76578000 71775000 12 12 8 12 12 12 12 12 12 12 12 26738000 43930000 456880 40078000 31288000 62488000 35483000 41915000 42540000 40651000 38086000 24896000 40977000 2343800 41493000 30110000 61814000 35991000 43616000 42811000 39753000 36878000 6 6 4 6 6 6 6 6 6 6 6 23975000 42301000 453760 39441000 28976000 30785000 26446000 38531000 37582000 37668000 36129000 22326000 39460000 1904600 40309000 27746000 32070000 27303000 38759000 37695000 36824000 34897000 6 6 4 6 6 6 6 6 6 6 6 21879000000 12252000000 9627700000 15693 2113 14395 81061;81062;81063;81064;81065;81066;81067;81068;81069 98032;98033;98034;98035;98036;98037;98038;98039;98040;98041;98042;98043;98044 98041 2595 13 QYPISLVLAPTR Unmodified 1356.7765 0.776536 104 O00571;O00571-2;O15523;O15523-2;O15523-3 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 68.515 68.058 2 7.9567E-05 23449 20211116_3430_TMUAki_TMT10x_P_F3 89.356 70.741 3458400 5529100 745.23 5566700 4536800 3328500 3540700 4112900 3761500 3935200 4177800 3220100 5159400 302530 5642900 4325100 3546500 3650400 4136800 3831800 3850600 4017200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3458400 5529100 745.23 5566700 4536800 3328500 3540700 4112900 3761500 3935200 4177800 3220100 5159400 302530 5642900 4325100 3546500 3650400 4136800 3831800 3850600 4017200 1 1 1 1 1 1 1 1 1 1 1 443130000 0 443130000 15694 104 14396 81070;81071 98045;98046 98045 2 QYPLVTPNEER Unmodified 1344.6674 0.66737948 936 P35606;P35606-2 COPB2 Coatomer subunit beta' yes no 0 0 0 0 By MS/MS 3 0 1 1 40.605 40.66 2 0.00048986 12050 20211116_3430_TMUAki_TMT10x_P_F3 89.679 67.593 132470 199730 680.27 234750 340960 299720 176620 142090 162120 114270 166760 123350 186500 14537 237980 322840 297790 187300 151590 165730 112750 160720 1 1 1 1 1 1 1 1 1 1 1 132470 199730 680.27 234750 340960 299720 176620 142090 162120 114270 166760 123350 186500 14537 237980 322840 297790 187300 151590 165730 112750 160720 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34181000 34181000 0 15695 936 14397 81072 98047 98047 1 QYPWGVAEVENGEHCDFTILR Unmodified 2519.154 0.15395782 1838 Q16181;Q16181-2 SEPT7 Septin-7 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 1.5 1 1 1 1 70.21 70.16 3 0.043322 24237 20211116_3439_TMUAki_TMT10x_S_F1 40.622 30.834 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15696 1838 14398 81073;81074 98048;98049 98049 2 QYPWGVVQVENENHCDFVK Unmodified 2347.0692 0.069165558 2965 Q9NVA2;Q9NVA2-2;Q9P0V9;Q92599;Q92599-4;Q92599-3;Q92599-2;Q9P0V9-3;Q9P0V9-2 SEPT11;SEPT10;SEPT8 Septin-11;Septin-10;Septin-8 yes no 0 0 0 0 By MS/MS 6 0 1 1 62.384 62.412 3 9.0503E-12 18541 20211116_3434_TMUAki_TMT10x_P_F6 125.18 115.43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15697 2965 14399 81075 98050 98050 1 QYTSPEEIDAQLQAEK Unmodified 1848.8741 0.87413737 1634 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 58.965 58.811 3 6.9713E-16 20687 20211116_3441_TMUAki_TMT10x_S_F3 157.91 139.99 16584000 29976000 411490 30405000 22860000 31760000 21277000 23686000 22341000 22733000 22374000 15444000 27972000 1846300 31008000 21905000 32090000 21698000 24461000 22683000 22241000 21582000 7 7 7 7 7 7 7 7 7 7 7 9940200 17567000 202580 17526000 15158000 24509000 14843000 13708000 12852000 12708000 12596000 9256900 16392000 1086000 17987000 14539000 24294000 15011000 14452000 13153000 12452000 12159000 4 4 4 4 4 4 4 4 4 4 4 6643500 12409000 208910 12878000 7702000 7251600 6433700 9978300 9489100 10025000 9777500 6187300 11581000 760310 13021000 7365800 7795800 6686900 10009000 9530100 9789000 9423100 3 3 3 3 3 3 3 3 3 3 3 3240000000 1807800000 1432100000 15698 1634 14400 81076;81077;81078;81079;81080;81081;81082;81083 98051;98052;98053;98054;98055;98056;98057;98058;98059;98060 98059 10 QYVETHWCAQSEK Unmodified 1664.7253 0.72530506 2533 Q96P70 IPO9 Importin-9 yes yes 0 0 0 0 By MS/MS 5 0 1 1 38.494 38.626 3 0.053381 8986 20211116_3444_TMUAki_TMT10x_S_F5 37.654 19.059 368160 620620 11928 844540 305860 266860 291390 500450 647820 408850 581120 342880 579950 40767 837120 293630 312740 307360 494290 641080 403080 562650 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 368160 620620 11928 844540 305860 266860 291390 500450 647820 408850 581120 342880 579950 40767 837120 293630 312740 307360 494290 641080 403080 562650 1 1 1 1 1 1 1 1 1 1 1 4012700 0 4012700 15699 2533 14401 81084 98061 98061 1 QYYTLLNQAPDMLHR Oxidation (M) 1877.9094 0.90941744 1616 Q13283;Q13283-2 G3BP1 Ras GTPase-activating protein-binding protein 1 yes no 0 0 1 0 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 52.939 53.384 3 7.9081E-05 17189 20211116_3446_TMUAki_TMT10x_S_F7 83.54 71.772 16609000 29012000 34679 28171000 21031000 29771000 20709000 24912000 24626000 22096000 25479000 15464000 27068000 760590 28823000 20148000 30121000 21144000 25490000 24912000 21696000 24552000 4 4 1 4 4 4 4 4 4 4 4 10620000 17783000 34679 16450000 14429000 24156000 14529000 16076000 15204000 14136000 16024000 9888500 16588000 428540 16991000 13840000 23952000 14753000 16694000 15467000 13886000 15432000 2 2 1 2 2 2 2 2 2 2 2 5989300 11230000 0 11722000 6602000 5614700 6180100 8836600 9422100 7960200 9455100 5575200 10480000 332050 11832000 6308500 6169000 6391200 8795600 9444700 7810500 9119900 2 2 0 2 2 2 2 2 2 2 2 5261900000 2833000000 2428900000 15700 1616 14402 81085;81086;81087 98062;98063;98064;98065 98065 2169 4 QYYTLLNQAPDMLHR Unmodified 1861.9145 0.91450282 1616 Q13283;Q13283-2 G3BP1 Ras GTPase-activating protein-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 62.206 62.429 3 1.3306E-19 18569 20211116_3447_TMUAki_TMT10x_S_F8 170.11 152.1 13107000 23076000 7136.3 19489000 16218000 18228000 16385000 16408000 14580000 16819000 17441000 12202000 21519000 899270 20116000 15540000 18606000 16555000 16787000 15013000 16410000 16736000 4 4 1 4 4 4 4 4 4 4 4 3263400 5611800 7136.3 5106800 3598200 6759500 4566200 4105800 3615400 4597800 4341000 3038600 5234500 281900 5270200 3474900 6724600 4551600 4323100 3745400 4470200 4165100 1 1 1 1 1 1 1 1 1 1 1 9843200 17464000 0 14382000 12620000 11468000 11819000 12302000 10965000 12222000 13100000 9163100 16284000 617370 14846000 12065000 11882000 12004000 12464000 11268000 11940000 12571000 3 3 0 3 3 3 3 3 3 3 3 3088200000 1419600000 1668500000 15701 1616 14402 81088;81089;81090;81091 98066;98067;98068;98069;98070 98069 5 RAAAASAAEAGIATTGTEDSDDALLK Unmodified 2475.2089 0.20888974 1232 P55036 PSMD4 26S proteasome non-ATPase regulatory subunit 4 yes yes 0 0 0 1 By MS/MS By MS/MS 3.33 0.471 4 2 3 3 51.417 51.298 3;4 5.5447E-61 17657 20211116_3441_TMUAki_TMT10x_S_F3 222.78 205.08 8557700 15932000 151560 16604000 12449000 16550000 10259000 12107000 12824000 11762000 12661000 7968800 14869000 864040 16890000 11888000 16763000 10600000 12524000 12928000 11502000 12219000 9 9 6 9 9 9 9 9 9 9 9 5133500 9672600 100320 9997700 9463700 13611000 7853100 7402200 7844400 7328000 7533000 4780300 9026800 548790 10230000 9037800 13504000 8049700 7837200 7969600 7159900 7276400 5 5 3 5 5 5 5 5 5 5 5 3424100 6259300 51239 6606100 2985200 2938300 2405500 4704900 4979600 4434200 5128400 3188500 5841900 315250 6659900 2850200 3259300 2550000 4686400 4958600 4341800 4942600 4 4 3 4 4 4 4 4 4 4 4 2865700000 1732700000 1133000000 15702 1232 14403 81092;81093;81094;81095;81096;81097 98071;98072;98073;98074;98075;98076;98077;98078;98079 98077 9 RAAALAK Unmodified 699.43916 0.43915786 206 O43264 ZW10 Centromere/kinetochore protein zw10 homolog yes yes 0 0 0 1 By MS/MS 1 0 1 1 28.955 28.955 3 0.081623 5599 20211116_3428_TMUAki_TMT10x_P_F1 44.42 44.42 1469300 2215600 0 1571600 1068200 1566400 1117300 618710 694860 769910 1190400 1367600 2065000 47081 1648700 1021000 1574800 1117700 681420 742970 745710 1133000 1 1 0 1 1 1 1 1 1 1 1 1469300 2215600 0 1571600 1068200 1566400 1117300 618710 694860 769910 1190400 1367600 2065000 47081 1648700 1021000 1574800 1117700 681420 742970 745710 1133000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23350000 23350000 0 15703 206 14404 81098 98080 98080 1 RAAATQPDAKDTPDEPWAFPAR Unmodified 2410.1666 0.16657142 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 2 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 44.732 44.856 4 1.948E-27 11452 20211116_3444_TMUAki_TMT10x_S_F5 178.73 162.84 21996000 35745000 142740 40874000 34914000 33487000 26942000 21355000 20711000 20216000 28435000 20480000 33373000 1899900 41226000 33270000 34297000 27553000 22291000 21617000 19791000 27191000 8 8 3 8 8 8 8 8 8 8 8 13201000 20370000 77547 23120000 24982000 26410000 19243000 12748000 11778000 11302000 15641000 12291000 19017000 1142900 23441000 23802000 26394000 19588000 13608000 12446000 11098000 14969000 4 4 2 4 4 4 4 4 4 4 4 8795300 15375000 65197 17754000 9931900 7077300 7698800 8606900 8933500 8913700 12794000 8189400 14355000 756980 17784000 9467800 7902800 7964200 8682900 9171300 8693000 12222000 4 4 1 4 4 4 4 4 4 4 4 1471800000 793680000 678090000 15704 2048 14405 81099;81100;81101;81102 98081;98082;98083;98084;98085;98086;98087;98088 98085 8 RAAEDDEDDDVDTK Unmodified 1592.6438 0.64380308 516 P06454;P06454-2 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 29.248 29.289 3 5.7794E-30 7618 20211116_3439_TMUAki_TMT10x_S_F1 214.11 193.73 657250 1008000 10489 876440 510680 489260 490290 145170 203400 191330 523580 612000 940120 57394 897620 489470 514570 489500 166340 230840 184960 495170 2 2 1 2 2 2 2 2 2 2 2 401830 629310 10489 545390 339120 316310 263860 96678 120810 119600 320980 374220 586890 42211 558890 323910 331430 267150 110070 136260 115860 303440 1 1 1 1 1 1 1 1 1 1 1 255420 378740 0 331050 171550 172940 226430 48487 82591 71725 202610 237780 353230 15183 338730 165560 183140 222350 56275 94575 69093 191730 1 1 0 1 1 1 1 1 1 1 1 56403000 25312000 31090000 15705 516 14406 81103;81104 98089;98090 98090 2 RAAEDDEDDDVDTKK Unmodified 1720.7388 0.7387661 516 P06454;P06454-2 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 yes no 0 0 0 2 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 30.241 29.994 4 5.6032E-24 7519 20211116_3429_TMUAki_TMT10x_P_F2 193.32 167.49 1241000 1735300 14569 1524200 940000 1137100 903760 345920 491110 405210 987920 1155600 1618400 111310 1564100 901220 1164500 905840 393410 535310 393310 937630 2 2 1 2 2 2 2 2 2 2 2 867740 1195400 14569 1053200 658750 848890 576780 250590 342760 281050 680790 808060 1114900 82593 1081400 630460 863950 582090 285890 370930 273230 646270 1 1 1 1 1 1 1 1 1 1 1 373240 539880 0 471050 281250 288210 326980 95329 148350 124170 307130 347510 503500 28713 482670 270760 300560 323750 107520 164370 120080 291360 1 1 0 1 1 1 1 1 1 1 1 105370000 74731000 30634000 15706 516 14407 81105;81106 98091;98092 98091 2 RAAEEEDEADPK Unmodified 1358.595 0.5950024 750 P20962 PTMS Parathymosin yes yes 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 25.984 25.88 3 2.0319E-07 6617 20211116_3429_TMUAki_TMT10x_P_F2 131.69 91.774 539280 814830 4130.8 788290 464550 513150 454210 263000 323410 266780 501010 502150 760230 47513 801950 445420 534110 457220 280140 341040 260400 477810 3 3 3 3 3 3 3 3 3 3 3 330630 474800 902.15 447810 290910 353600 247170 120620 158210 135270 280670 307850 442940 27696 457340 277890 360800 250250 134840 169190 131510 266960 2 2 2 2 2 2 2 2 2 2 2 208650 340030 3228.7 340490 173640 159550 207050 142370 165200 131510 220340 194300 317290 19817 344610 167530 173310 206970 145300 171850 128890 210850 1 1 1 1 1 1 1 1 1 1 1 53124000 27330000 25794000 15707 750 14408 81107;81108;81109;81110 98093;98094;98095 98094 3 RAAEEEDEADPKR Unmodified 1514.6961 0.69611342 750 P20962 PTMS Parathymosin yes yes 0 0 0 2 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 25.02 24.812 3;4 5.8757E-09 5160 20211116_3429_TMUAki_TMT10x_P_F2 127.79 104.88 602070 863800 14408 720310 664770 978780 740250 627240 571090 549960 646980 560680 805480 60368 748840 640080 973280 741680 653160 591080 540300 621770 4 4 1 4 4 4 4 4 4 4 4 514070 699510 14408 607990 548230 872720 621360 557240 482990 473340 536110 478750 652370 55589 630670 528320 865650 622160 579970 499300 465750 515520 2 2 1 2 2 2 2 2 2 2 2 87994 164290 0 112320 116540 106060 118890 70000 88095 76614 110870 81927 153110 4778.2 118170 111760 107620 119520 73189 91777 74552 106240 2 2 0 2 2 2 2 2 2 2 2 53756000 48434000 5322200 15708 750 14409 81111;81112;81113;81114;81115 98096;98097;98098;98099 98096 4 RAAQLCGAGMAAVVDK Unmodified 1616.8127 0.81268028 730 P19367;P19367-4;P19367-2;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 1 By MS/MS 8 0 1 1 44.99 45.145 3 4.7267E-05 12174 20211116_3436_TMUAki_TMT10x_P_F8 86.54 59.511 620790 1070800 10844 1512100 1659700 1571300 1098900 1004200 916810 852010 1050000 578100 1000800 76124 1512300 1577900 1584300 1138400 1045100 945390 838390 1008700 1 1 1 1 1 1 1 1 1 1 1 620790 1070800 10844 1512100 1659700 1571300 1098900 1004200 916810 852010 1050000 578100 1000800 76124 1512300 1577900 1584300 1138400 1045100 945390 838390 1008700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57339000 57339000 0 15709 730 14410 81116 98100 98100 1 RAAQLCGAGMAAVVDR Unmodified 1644.8188 0.81882829 1188 P52789 HK2 Hexokinase-2 yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 38.74 39.039 3 6.3227E-30 9567 20211116_3436_TMUAki_TMT10x_P_F8 198.07 169.98 693540 1038500 11542 1255300 1038500 950420 774340 751070 731410 712720 945520 645840 969820 73088 1260700 989840 982550 797930 772550 753560 697660 905480 2 2 2 2 2 2 2 2 2 2 2 318580 477180 1240.9 568740 717850 633550 439870 346980 328750 316220 418460 296640 445610 33161 574710 681400 634980 457270 366330 342500 310110 400900 1 1 1 1 1 1 1 1 1 1 1 374960 561290 10301 686520 320670 316870 334470 404090 402660 396500 527060 349210 524220 39927 685990 308450 347570 340660 406220 411060 387560 504590 1 1 1 1 1 1 1 1 1 1 1 164350000 93196000 71152000 15710 1188 14411 81117;81118 98101;98102 98101 2 RAAQLCGAGMAAVVDR Oxidation (M) 1660.8137 0.81374291 1188 P52789 HK2 Hexokinase-2 yes yes 0 0 1 1 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 31.945 32.41 3 2.703E-05 6362 20211116_3447_TMUAki_TMT10x_S_F8 88.768 77.154 74738 115680 0 131580 90212 106100 69984 88607 70605 78018 82433 69567 108000 1800.5 132730 85818 109270 72064 90655 72221 76633 79154 2 2 0 2 2 2 2 2 2 2 2 50284 68393 0 78990 70747 85597 53533 58621 53919 47899 50039 46798 63857 1800.5 79933 67230 86187 55213 60642 54699 47222 48391 1 1 0 1 1 1 1 1 1 1 1 24454 47290 0 52594 19465 20502 16450 29985 16686 30119 32394 22769 44146 0 52800 18588 23079 16851 30013 17522 29411 30763 1 1 0 1 1 1 1 1 1 1 1 3129300 1558000 1571300 15711 1188 14411 81119;81120 98103 98103 1596 1 RAASLNYLNQPSAAPLQVSR Unmodified 2155.1498 0.14979914 2943 Q9NSK0;Q9NSK0-5;Q9NSK0-3 KLC4 Kinesin light chain 4 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 46.948 47.084 3 2.2718E-07 16012 20211116_3441_TMUAki_TMT10x_S_F3 88.282 74.855 686080 1186200 0 1283400 1343700 1767500 1007200 1221700 1277200 1084100 1111400 638800 1107200 65814 1309600 1279900 1758500 1047600 1265600 1281700 1064400 1077200 1 1 0 1 1 1 1 1 1 1 1 686080 1186200 0 1283400 1343700 1767500 1007200 1221700 1277200 1084100 1111400 638800 1107200 65814 1309600 1279900 1758500 1047600 1265600 1281700 1064400 1077200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 207330000 207330000 0 15712 2943 14412 81121;81122 98104;98105 98105 2 RAAVLLEQER Unmodified 1183.6673 0.6673199 1633 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 0 1 By MS/MS By MS/MS 4.3 1 1 1 2 6 5 5 30.644 30.625 2;3 3.5169E-07 7934 20211116_3433_TMUAki_TMT10x_P_F5 113.46 74.311 4834800 7484300 121680 7788400 8859900 8219800 5234000 5057800 5461100 4877200 6658900 4502600 6984800 563920 7930500 8411300 8276200 5505700 5296600 5588300 4770800 6386600 8 8 5 8 8 8 8 8 8 8 8 3701100 5490800 110160 5732700 7643300 7196800 4059000 3716000 4113900 3711800 4936300 3446800 5124400 461930 5853100 7245100 7163100 4306300 3953800 4211900 3625300 4736400 3 3 2 3 3 3 3 3 3 3 3 1133800 1993500 11515 2055700 1216600 1023000 1175000 1341700 1347200 1165400 1722600 1055800 1860400 101990 2077300 1166200 1113000 1199400 1342800 1376400 1145500 1650100 5 5 3 5 5 5 5 5 5 5 5 537690000 433090000 104600000 15713 1633 14413 81123;81124;81125;81126;81127;81128;81129;81130;81131;81132 98106;98107;98108;98109;98110;98111;98112;98113;98114;98115 98109 10 RAAVLLEQERQQEIAK Unmodified 1881.0432 0.043208804 1633 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 0 2 By MS/MS 4.5 0.5 1 1 2 38.804 38.829 4 1.6286E-08 10249 20211116_3433_TMUAki_TMT10x_P_F5 121.03 108.51 1208100 1794000 9385.5 1865800 2935700 2924400 1440000 1537900 1786600 1525500 1721900 1124900 1674200 133100 1914100 2777800 2882700 1549600 1633200 1800100 1490400 1663100 1 1 1 1 1 1 1 1 1 1 1 1208100 1794000 9385.5 1865800 2935700 2924400 1440000 1537900 1786600 1525500 1721900 1124900 1674200 133100 1914100 2777800 2882700 1549600 1633200 1800100 1490400 1663100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 157420000 157420000 0 15714 1633 14414 81133;81134 98116 98116 1 RACAAGTPAVIR Unmodified 1241.6663 0.66627404 1160 P51610;P51610-2;P51610-4 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 0 1 By MS/MS 1 0 1 1 28.264 28.264 3 2.6357E-06 5325 20211116_3428_TMUAki_TMT10x_P_F1 116.82 83.41 96210 152400 0 117680 128210 164120 110040 77177 82751 72490 105090 89564 142080 6293.7 123200 122340 162380 111730 82716 86172 70991 100690 1 1 0 1 1 1 1 1 1 1 1 96210 152400 0 117680 128210 164120 110040 77177 82751 72490 105090 89564 142080 6293.7 123200 122340 162380 111730 82716 86172 70991 100690 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7273900 7273900 0 15715 1160 14415 81135 98117 98117 1 RADDDRFPR Unmodified 1146.553 0.55301842 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 2 By MS/MS 3 0 1 1 26.403 26.11 3 0.00052224 7559 20211116_3441_TMUAki_TMT10x_S_F3 120.99 96.767 122960 220440 0 208730 136350 109680 131910 110680 115010 117250 168900 114490 205650 10374 212280 130620 117860 133510 112670 119660 114240 161260 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 122960 220440 0 208730 136350 109680 131910 110680 115010 117250 168900 114490 205650 10374 212280 130620 117860 133510 112670 119660 114240 161260 1 1 0 1 1 1 1 1 1 1 1 7306500 0 7306500 15716 1684 14416 81136 98118 98118 1 RADPAELR Unmodified 926.49338 0.49337828 3141 Q9UJS0;Q9UJS0-2 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 26.925 26.659 3 0.061504 7876 20211116_3441_TMUAki_TMT10x_S_F3 46.457 12.284 155780 231430 131.89 217350 164280 169030 175590 123040 127310 135460 177470 145020 215900 9416.6 222010 157570 174140 176030 127790 133410 131790 169650 2 2 1 2 2 2 2 2 2 2 2 64079 92599 131.89 77571 73442 105500 68624 49900 52366 61224 70999 59665 86349 5566.6 80614 70307 104500 69357 53880 54646 59328 67914 1 1 1 1 1 1 1 1 1 1 1 91701 138830 0 139780 90843 63531 106970 73140 74942 74237 106470 85352 129550 3850 141390 87267 69641 106670 73912 78761 72459 101730 1 1 0 1 1 1 1 1 1 1 1 9090100 1805400 7284700 15717 3141 14417 81137;81138 98119;98120 98120 2 RAEDGSVIDYELIDQDAR Unmodified 2063.976 0.97597668 537 P07355;P07355-2 ANXA2 Annexin A2 yes no 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 53.157 52.921 3 1.365E-23 17282 20211116_3439_TMUAki_TMT10x_S_F1 169.6 149.76 2462000 4344300 3820.9 4903600 2333500 2234600 2039000 4168300 4157000 4001000 3867600 2292200 4055800 180570 4923000 2228700 2484500 2149300 4135400 4126000 3914500 3739900 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2462000 4344300 3820.9 4903600 2333500 2234600 2039000 4168300 4157000 4001000 3867600 2292200 4055800 180570 4923000 2228700 2484500 2149300 4135400 4126000 3914500 3739900 3 3 2 3 3 3 3 3 3 3 3 535960000 0 535960000 15718 537 14418 81139;81140 98121;98122;98123 98121 3 RAEEFLTASQEAL Unmodified 1463.7256 0.72562264 1731 Q14738;Q14738-3;Q14738-2 PPP2R5D Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform yes no 0 0 0 1 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 58.095 57.873 2 3.5595E-12 18781 20211116_3429_TMUAki_TMT10x_P_F2 128.35 104.92 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15719 1731 14419 81141;81142;81143;81144 98124;98125;98126;98127 98125 4 RAEEIWQQSVIGDYLAR Unmodified 2033.033 0.033038048 705 P17480;P17480-2 UBTF Nucleolar transcription factor 1 yes no 0 0 0 1 By MS/MS By MS/MS 6.4 0.49 3 2 3 2 67.807 68.034 3 1.2537E-29 21238 20211116_3445_TMUAki_TMT10x_S_F6 194.05 175.68 9078700 13930000 68620 13481000 10002000 14711000 10730000 10312000 9951800 9701300 11558000 8453600 12996000 817780 13803000 9611900 14812000 10822000 10689000 10215000 9500000 11100000 4 4 2 4 4 4 4 4 4 4 4 6202100 9271400 68620 8843700 6347000 11722000 7580100 6855600 6827500 6643800 7805800 5775300 8649600 580180 9095200 6121000 11654000 7601100 7209500 7013400 6497400 7499700 2 2 2 2 2 2 2 2 2 2 2 2876600 4658400 0 4637200 3654800 2989400 3150000 3456700 3124400 3057500 3752200 2678300 4346700 237600 4707600 3491000 3157600 3220800 3479000 3201900 3002600 3600200 2 2 0 2 2 2 2 2 2 2 2 1252800000 669590000 583220000 15720 705 14420 81145;81146;81147;81148;81149 98128;98129;98130;98131;98132;98133;98134 98132 7 RAEFTVETR Unmodified 1107.5673 0.5672715 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 1 By MS/MS By MS/MS 3.57 0.904 1 2 3 1 3 4 30.626 30.591 3 3.4941E-06 6557 20211116_3431_TMUAki_TMT10x_P_F4 165.18 101.14 1811900 2690700 55355 2625100 2006800 2533400 1830000 1538100 1556900 1544900 2157000 1687500 2510500 199530 2681300 1923100 2564200 1857100 1614300 1617100 1508500 2062200 5 5 3 5 5 5 5 5 5 5 5 1465900 2135500 55355 2109300 1623400 2127200 1386700 1139100 1152100 1159400 1676600 1365300 1992500 175330 2153900 1554000 2143700 1411700 1208600 1201000 1131500 1601100 3 3 3 3 3 3 3 3 3 3 3 346010 555250 0 515790 383330 406240 443300 399010 404750 385480 480430 322160 517960 24197 527340 369040 420450 445330 405650 416130 377040 461110 2 2 0 2 2 2 2 2 2 2 2 263960000 163520000 100440000 15721 755 14421 81150;81151;81152;81153;81154;81155;81156 98135;98136;98137;98138;98139;98140 98136 6 RAEISNAIDQYVTGTIGEDEDLIK Unmodified 2649.3134 0.31335481 892 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 1 By matching By MS/MS 3.33 0.471 2 1 1 2 77.937 77.854 3 6.8622E-17 26231 20211116_3442_TMUAki_TMT10x_S_F4 134.62 116.79 4214500 6965800 45434 6575200 5410700 4729500 5759700 3733100 3305200 4027600 5245800 3923900 6498400 334260 6707800 5194700 4909500 5748100 3854700 3538800 3921500 5000400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4214500 6965800 45434 6575200 5410700 4729500 5759700 3733100 3305200 4027600 5245800 3923900 6498400 334260 6707800 5194700 4909500 5748100 3854700 3538800 3921500 5000400 2 2 1 2 2 2 2 2 2 2 2 3187100000 1285500000 1901600000 15722 892 14422 81157;81158;81159 98141;98142 98142 2 RAEYFDGSEPVQNR Unmodified 1666.7699 0.76994707 2871 Q9HCS7 XAB2 Pre-mRNA-splicing factor SYF1 yes yes 0 0 0 1 By MS/MS 3 0 1 1 33.137 32.898 3 0.021963 10175 20211116_3441_TMUAki_TMT10x_S_F3 49.17 36.189 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15723 2871 14423 81160 98143 98143 1 RAFIITGQTYTR Unmodified 1425.7728 0.7728476 875 P30566;P30566-2 ADSL Adenylosuccinate lyase yes no 0 0 0 1 By MS/MS 4 0 1 1 38.657 38.838 3 0.0017157 10302 20211116_3442_TMUAki_TMT10x_S_F4 75.378 49.439 1057600 1744500 17162 2077200 1050500 714610 781920 1689100 1605500 1316900 1683500 984820 1629000 103570 2075200 1001600 833950 832680 1657100 1600000 1301500 1621600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1057600 1744500 17162 2077200 1050500 714610 781920 1689100 1605500 1316900 1683500 984820 1629000 103570 2075200 1001600 833950 832680 1657100 1600000 1301500 1621600 2 2 2 2 2 2 2 2 2 2 2 48038000 0 48038000 15724 875 14424 81161 98144;98145 98145 2 RAFLIEEQK Unmodified 1132.6241 0.6240581 1089 P49207 RPL34 60S ribosomal protein L34 yes yes 0 0 0 1 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 39.871 40.155 3 9.3506E-06 9908 20211116_3445_TMUAki_TMT10x_S_F6 157.78 93.124 3162900 4964600 0 5712900 5560500 4201400 3582900 3078700 3203500 3070900 4053500 2944900 4635300 283310 5752700 5281100 4348100 3726000 3186600 3305700 2999500 3883900 3 3 0 3 3 3 3 3 3 3 3 1626100 2422800 0 2948300 4014200 2922900 1792400 1711400 1724900 1714700 2108800 1514000 2262700 164420 2970200 3792900 2952000 1932200 1801300 1771400 1674600 2022400 1 1 0 1 1 1 1 1 1 1 1 1536800 2541800 0 2764700 1546300 1278500 1790500 1367300 1478500 1356200 1944700 1430800 2372600 118890 2782400 1488300 1396100 1793800 1385400 1534300 1325000 1861500 2 2 0 2 2 2 2 2 2 2 2 777960000 559350000 218610000 15725 1089 14425 81162;81163;81164 98146;98147;98148 98147 3 RAFVHWYVGEGMEEGEFSEAR Oxidation (M) 2501.107 0.10700763 1417;2044 P68363;P68363-2;P68366;P68366-2;Q71U36;Q71U36-2;Q9BQE3;P0DPH8;P0DPH7;Q9NY65;Q9NY65-2 TUBA1B;TUBA4A;TUBA1A;TUBA1C;TUBA8 Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-8 chain no no 0 0 1 1 By MS/MS By MS/MS 5.2 0.748 1 2 2 2 3 50.511 50.657 4 2.965E-07 15122 20211116_3442_TMUAki_TMT10x_S_F4 86.575 75.94 8668300 14586000 148970 16493000 11277000 12680000 9197700 11730000 11699000 11683000 12788000 8071900 13617000 861080 16634000 10768000 13132000 9515800 11973000 11831000 11412000 12302000 6 6 4 6 6 6 6 6 6 6 6 3182200 4482400 17708 5484100 5759100 7505000 3963200 4025800 4372700 4444200 4313400 2962900 4186300 290870 5554200 5476400 7442800 4126600 4281300 4428400 4323200 4162800 2 2 1 2 2 2 2 2 2 2 2 5486100 10103000 131260 11009000 5518200 5175400 5234500 7703900 7326700 7238500 8474200 5109100 9430700 570200 11080000 5291500 5689000 5389200 7691300 7402800 7088700 8139200 4 4 3 4 4 4 4 4 4 4 4 1441900000 666290000 775640000 15726 1417;2044 14426 81165;81166;81167;81168;81169 98149;98150;98151;98152;98153;98154 98151 1906 6 RAFVPQLR Unmodified 985.58213 0.58213371 1154 P51532-5;P51532-2;P51532-3;P51532-4;P51532 SMARCA4 Transcription activator BRG1 yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 35.905 35.865 3 0.0034109 8759 20211116_3431_TMUAki_TMT10x_P_F4 82.241 65.277 368780 523550 0 533230 718260 694340 427210 383950 391150 399560 447440 343330 488570 29705 545700 681010 690440 447440 406500 401500 389590 429890 1 1 0 1 1 1 1 1 1 1 1 368780 523550 0 533230 718260 694340 427210 383950 391150 399560 447440 343330 488570 29705 545700 681010 690440 447440 406500 401500 389590 429890 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 112950000 112950000 0 15727 1154 14427 81170;81171 98155;98156 98155 2 RAGELTEDEVER Unmodified 1402.6688 0.66883604 1345 P62269 RPS18 40S ribosomal protein S18 yes yes 0 0 0 1 By MS/MS By MS/MS 1.57 0.728 4 2 1 4 3 30.077 30.022 2;3 1.0742E-58 7931 20211116_3439_TMUAki_TMT10x_S_F1 318.83 195.14 2065600 3347000 9763.7 3753500 4180000 2326800 1936500 1190100 1798400 1424400 2431700 1923200 3124600 197020 3779100 3951300 2432900 2077300 1274400 1858100 1381500 2326100 6 6 3 6 6 6 6 6 6 6 6 1420500 2242600 9763.7 2510600 3576700 1928500 1284800 847010 1237500 993440 1654500 1322600 2093500 150570 2533600 3372100 1976300 1421600 920150 1275800 964210 1583100 4 4 3 4 4 4 4 4 4 4 4 645110 1104400 0 1242900 603290 398300 651710 343050 560930 430960 777170 600610 1031100 46457 1245600 579260 456620 655710 354210 582290 417280 743010 2 2 0 2 2 2 2 2 2 2 2 1317600000 693630000 623930000 15728 1345 14428 81172;81173;81174;81175;81176;81177;81178 98157;98158;98159;98160;98161;98162;98163 98162 7 RAGGEESQFEMDI Oxidation (M) 1483.6249 0.62492232 1643 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 yes yes 0 0 1 1 By MS/MS By MS/MS 1.67 0.816 5 2 2 5 4 42.5 42.42 2;3 8.3867E-12 10909 20211116_3428_TMUAki_TMT10x_P_F1 152.54 145.6 5662800 9045100 67279 10917000 8142500 8844600 5718700 6949400 8311400 6952600 7889600 5272800 8447000 527480 10974000 7748000 9095500 6007700 7161400 8327000 6790100 7623900 9 9 4 9 9 9 9 9 9 9 9 2477400 3869300 35795 4748900 5482800 6700700 3560800 3067500 3761400 3161500 3330900 2306700 3613800 253240 4811800 5209300 6624200 3718600 3305000 3802500 3083800 3226500 4 4 1 4 4 4 4 4 4 4 4 3185400 5175700 31483 6167700 2659600 2143900 2157900 3881900 4550000 3791100 4558700 2966100 4833200 274240 6161800 2538700 2471400 2289200 3856400 4524500 3706300 4397400 5 5 3 5 5 5 5 5 5 5 5 2976000000 2083800000 892190000 15729 1643 14429 81179;81180;81181;81182;81183;81184;81185;81186;81187 98164;98165;98166;98167;98168;98169;98170;98171;98172;98173;98174 98164 2210 11 RAGGEESQFEMDI Unmodified 1467.63 0.63000769 1643 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 51.058 50.888 2 1.2549E-12 17484 20211116_3441_TMUAki_TMT10x_S_F3 139.43 118.73 10003000 15250000 89561 23643000 14201000 12020000 10252000 7016500 7693000 6766200 12312000 9314300 14261000 933790 23353000 13520000 12849000 10527000 7378900 8102200 6618500 11734000 4 4 3 4 4 4 4 4 4 4 4 5859900 8908000 15333 12423000 12021000 10421000 8178400 3621400 3851300 3764400 6836100 5455900 8325200 548600 12395000 11428000 10587000 8362700 4029500 4213300 3670600 6502100 2 2 1 2 2 2 2 2 2 2 2 4143300 6342300 74228 11219000 2180000 1598500 2073900 3395100 3841800 3001800 5475500 3858400 5936200 385190 10957000 2092100 2262200 2163900 3349500 3889000 2947900 5231400 2 2 2 2 2 2 2 2 2 2 2 1596800000 981580000 615230000 15730 1643 14429 81188;81189;81190;81191;81192;81193 98175;98176;98177;98178;98179;98180 98180 6 RAGGPEGPPWLPR Unmodified 1388.7313 0.73131714 1688 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 42.444 42.262 3 1.3459E-06 10810 20211116_3428_TMUAki_TMT10x_P_F1 104.55 81.537 803510 1365600 23330 1641000 697830 640110 689910 1124100 1097600 915860 1200600 748320 1275300 86879 1639700 670330 724720 712840 1112300 1102500 903060 1155000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 803510 1365600 23330 1641000 697830 640110 689910 1124100 1097600 915860 1200600 748320 1275300 86879 1639700 670330 724720 712840 1112300 1102500 903060 1155000 2 2 2 2 2 2 2 2 2 2 2 43680000 0 43680000 15731 1688 14430 81194;81195;81196;81197 98181;98182;98183;98184;98185 98181 5 RAGKLDPHLVLDQLR Unmodified 1729.9951 0.9951364 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 2 By MS/MS 2 0 1 1 48.741 48.637 4 0.0012285 13711 20211116_3440_TMUAki_TMT10x_S_F2 73.262 57.875 1001900 1533300 44524 1858600 1011400 785540 721570 1295000 1337600 1150200 1394200 933160 1431900 124690 1857100 965190 877890 766140 1286700 1335800 1129300 1343200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1001900 1533300 44524 1858600 1011400 785540 721570 1295000 1337600 1150200 1394200 933160 1431900 124690 1857100 965190 877890 766140 1286700 1335800 1129300 1343200 1 1 1 1 1 1 1 1 1 1 1 195280000 0 195280000 15732 935 14431 81198 98186 98186 1 RAGLNEMVEYITHSR Oxidation (M) 1790.8734 0.87336628 1731 Q14738;Q14738-3;Q14738-2 PPP2R5D Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform yes no 0 0 1 1 By MS/MS By MS/MS 5 0 2 1 1 35.295 35.365 4 0.0065693 8922 20211116_3433_TMUAki_TMT10x_P_F5 58.159 46.366 1600700 2592300 53477 2911300 2858600 2789100 2052800 2137400 2207300 1756900 2456700 1490800 2420100 200170 2945700 2724000 2834200 2129100 2194600 2247700 1731500 2362200 3 3 3 3 3 3 3 3 3 3 3 758780 1223700 11108 1352900 2003400 1998200 1123000 1099200 1175700 884970 1165700 706590 1142300 90692 1380700 1899500 1975700 1186800 1156500 1193400 873130 1124900 1 1 1 1 1 1 1 1 1 1 1 841940 1368600 42369 1558400 855260 790850 929760 1038200 1031700 871920 1290900 784250 1277800 109480 1564900 824500 858560 942350 1038100 1054300 858420 1237300 2 2 2 2 2 2 2 2 2 2 2 195990000 119800000 76185000 15733 1731 14432 81199;81200 98187;98188;98189 98187 2329 3 RAGLNEMVEYITHSR Unmodified 1774.8785 0.87845166 1731 Q14738;Q14738-3;Q14738-2 PPP2R5D Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform yes no 0 0 0 1 By MS/MS 8 0 1 1 55.376 55.508 4 1.7998E-05 16373 20211116_3436_TMUAki_TMT10x_P_F8 98.676 85.476 950760 1532600 0 1533400 1423900 1983200 1119300 1135100 1065300 1111200 1179800 885170 1430100 75799 1571000 1357000 1973600 1149600 1196200 1090200 1086300 1134600 1 1 0 1 1 1 1 1 1 1 1 950760 1532600 0 1533400 1423900 1983200 1119300 1135100 1065300 1111200 1179800 885170 1430100 75799 1571000 1357000 1973600 1149600 1196200 1090200 1086300 1134600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 278980000 278980000 0 15734 1731 14432 81201 98190 98190 1 RAGVTCIVLPAENKK Unmodified 1654.9189 0.91885991 955 P36776;P36776-3;P36776-2 LONP1 Lon protease homolog, mitochondrial yes no 0 0 0 2 By MS/MS By matching 2 0 2 1 1 40.86 40.76 4 0.023012 11834 20211116_3429_TMUAki_TMT10x_P_F2 52.42 41.476 930840 1435100 5731 1874100 2860900 2141400 1322500 1282600 1058800 980160 1502500 866740 1340800 109550 1884900 2704800 2145700 1413700 1338400 1104400 969740 1435700 1 1 1 1 1 1 1 1 1 1 1 930840 1435100 5731 1874100 2860900 2141400 1322500 1282600 1058800 980160 1502500 866740 1340800 109550 1884900 2704800 2145700 1413700 1338400 1104400 969740 1435700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 178340000 129890000 48452000 15735 955 14433 81202;81203 98191 98191 1 RAIELATTLDESLTNR Unmodified 1801.9534 0.95339074 2714 Q9BXJ9 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes yes 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 61.49 61.5 3 8.6004E-29 18165 20211116_3434_TMUAki_TMT10x_P_F6 182.36 153.02 4926100 8415700 4983.5 8403300 5895300 6973200 5901500 5903400 4893200 5587700 6264300 4586200 7852700 360970 8552200 5648900 7168000 5954600 6046700 5070800 5470200 6000500 2 2 1 2 2 2 2 2 2 2 2 2352600 3896700 0 3902100 2891300 4513000 2815600 2893500 2178500 2778500 2893600 2189900 3636100 136930 3989600 2766200 4523400 2840200 3020200 2269500 2718400 2769200 1 1 0 1 1 1 1 1 1 1 1 2573600 4519000 4983.5 4501200 3004000 2460200 3086000 3009900 2714700 2809200 3370700 2396300 4216600 224040 4562700 2882700 2644600 3114500 3026500 2801300 2751900 3231300 1 1 1 1 1 1 1 1 1 1 1 644660000 384920000 259750000 15736 2714 14434 81204;81205 98192;98193 98192 2 RAIGNIELGIR Unmodified 1210.7146 0.71460444 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 1.12 1 1 1 1 1 3 42.915 42.836 3 0.0028095 13156 20211116_3439_TMUAki_TMT10x_S_F1 73.346 41.412 749930 1217700 7733.9 1201500 800750 734150 844680 1107100 1103000 1007900 1102600 698310 1136200 70094 1219900 769370 785120 862500 1103800 1110800 988460 1063700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 749930 1217700 7733.9 1201500 800750 734150 844680 1107100 1103000 1007900 1102600 698310 1136200 70094 1219900 769370 785120 862500 1103800 1110800 988460 1063700 1 1 1 1 1 1 1 1 1 1 1 42241000 0 42241000 15737 1057 14435 81206;81207;81208;81209 98194;98195;98196 98195 3 RAIKNDSVVAGGGAIEMELSK Oxidation (M) 2160.1209 0.12086678 2609 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 1 2 By MS/MS By MS/MS 6 0.707 1 2 1 2 2 48.497 48.727 4 1.0091E-13 15362 20211116_3446_TMUAki_TMT10x_S_F7 123.43 107.49 27288000 43887000 518590 58489000 33386000 34840000 22628000 37042000 35843000 33167000 39500000 25411000 41006000 2413000 58284000 31764000 37000000 23925000 37435000 36016000 32552000 37991000 7 7 2 7 7 7 7 7 7 7 7 8282200 13114000 0 19034000 18504000 21327000 10850000 9578500 8859500 8423900 10222000 7711000 12259000 759590 19034000 17545000 21321000 11344000 10297000 9148500 8274800 9818600 2 2 0 2 2 2 2 2 2 2 2 19006000 30774000 518590 39455000 14883000 13513000 11779000 27464000 26983000 24743000 29278000 17700000 28748000 1653400 39249000 14219000 15680000 12581000 27138000 26867000 24277000 28172000 5 5 2 5 5 5 5 5 5 5 5 3556600000 1369500000 2187100000 15738 2609 14436 81210;81211;81212;81213 98197;98198;98199;98200;98201;98202;98203 98202 2845 7 RAIKNDSVVAGGGAIEMELSK Unmodified 2144.126 0.12595216 2609 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 2 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 51.122 51.477 4 7.3964E-14 16417 20211116_3446_TMUAki_TMT10x_S_F7 133.21 88.068 46049000 76014000 646360 82080000 64675000 54269000 50351000 41653000 36812000 40379000 61262000 42880000 70952000 4649900 82891000 61690000 56718000 51403000 42949000 38910000 39489000 58340000 7 7 6 7 7 7 7 7 7 7 7 17757000 28149000 193670 31074000 32401000 31605000 24914000 12318000 11156000 13339000 21423000 16534000 26277000 1826700 31502000 30889000 31731000 25237000 13528000 12316000 12985000 20348000 2 2 1 2 2 2 2 2 2 2 2 28292000 47865000 452690 51007000 32274000 22664000 25437000 29335000 25655000 27040000 39839000 26346000 44675000 2823300 51389000 30801000 24987000 26166000 29421000 26594000 26503000 37992000 5 5 5 5 5 5 5 5 5 5 5 3220200000 1751700000 1468500000 15739 2609 14436 81214;81215;81216 98204;98205;98206;98207;98208;98209;98210 98206 7 RALANSLACQGK Unmodified 1287.6718 0.67175335 482 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 34.291 34.172 3 5.5368E-09 10650 20211116_3441_TMUAki_TMT10x_S_F3 147.96 122.3 4029700 6068100 24714 6949600 4713000 3529500 3684300 2068900 2761400 2251700 4120200 3752100 5665500 348030 6976400 4493400 3773800 3762300 2182700 2897800 2191600 3932500 5 5 3 5 5 5 5 5 5 5 5 1831900 2558400 16104 3022600 3066100 2182700 1599600 884350 1210900 971360 1797000 1705700 2389000 172740 3038200 2903300 2246200 1687200 967280 1269700 945100 1715300 2 2 1 2 2 2 2 2 2 2 2 2197800 3509700 8610.4 3927000 1646900 1346800 2084700 1184500 1550400 1280300 2323200 2046400 3276500 175300 3938200 1590100 1527600 2075200 1215400 1628100 1246500 2217200 3 3 2 3 3 3 3 3 3 3 3 293210000 172060000 121160000 15740 482 14437 81217;81218;81219;81220 98211;98212;98213;98214;98215 98214 5 RALDIPLVK Unmodified 1023.6441 0.64406526 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 1 By MS/MS 8 0 1 1 50.312 50.213 3 0.094378 13715 20211116_3447_TMUAki_TMT10x_S_F8 40.883 10.698 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15741 1997 14438 81221 98216 98216 1 RALDLNLK Unmodified 941.56581 0.56581494 679 P14927;P14927-2 UQCRB Cytochrome b-c1 complex subunit 7 yes no 0 0 0 1 By MS/MS 8 0 1 1 42.588 42.652 3 0.054964 10597 20211116_3447_TMUAki_TMT10x_S_F8 51.488 19.168 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15742 679 14439 81222 98217 98217 1 RALEYTIYNQELNETR Unmodified 2011.9963 0.99631819 3219 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.756 2 3 2 4 3 49.029 49.177 3 3.8359E-51 14277 20211116_3433_TMUAki_TMT10x_P_F5 236.78 217.78 10137000 16502000 50658 19331000 13426000 14389000 9876400 13621000 14117000 11319000 14065000 9438200 15408000 684470 19447000 12778000 14946000 10335000 13819000 14174000 11149000 13569000 8 8 3 8 8 8 8 8 8 8 8 4160800 6743600 45560 7794900 7318000 8776500 5093500 5337900 5139000 4500800 5151700 3874200 6296400 397800 7892500 6961500 8803100 5284300 5575700 5226500 4430200 4969300 3 3 2 3 3 3 3 3 3 3 3 5976500 9758100 5098 11536000 6107500 5612300 4782900 8283400 8977800 6817800 8913100 5564000 9112000 286670 11554000 5816400 6142900 5050600 8243300 8947500 6719000 8600100 5 5 1 5 5 5 5 5 5 5 5 2044400000 839530000 1204900000 15743 3219 14440 81223;81224;81225;81226;81227;81228;81229 98218;98219;98220;98221;98222;98223;98224;98225;98226;98227 98220 10 RALFPEPR Unmodified 984.5505 0.55049923 2507 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 34.488 34.482 3 0.06183 7784 20211116_3428_TMUAki_TMT10x_P_F1 46.335 22.181 2961100 4417300 52063 5023100 3921400 3810400 3284700 2179700 2117800 2266200 3488400 2757400 4124100 307460 5063500 3747200 3919900 3329000 2301000 2254200 2209800 3322700 3 3 3 3 3 3 3 3 3 3 3 1971000 2846800 48980 3261400 3086200 3128200 2230300 1577600 1469800 1557200 2279300 1835600 2657900 224680 3295800 2940700 3160200 2283500 1681600 1557200 1521700 2173700 2 2 2 2 2 2 2 2 2 2 2 990070 1570600 3082.9 1761700 835210 682170 1054400 602110 648080 709070 1209100 921870 1466200 82788 1767600 806540 759740 1045400 619420 697000 688110 1149000 1 1 1 1 1 1 1 1 1 1 1 118060000 72898000 45158000 15744 2507 14441 81230;81231 98228;98229;98230 98229 3 RALGAHLEAEPK Unmodified 1290.7044 0.70443369 2956 Q9NUQ3;Q9NUQ3-2 TXLNG Gamma-taxilin yes no 0 0 0 1 By MS/MS 5 0 1 1 31.487 31.423 4 0.00015908 7276 20211116_3433_TMUAki_TMT10x_P_F5 89.301 26.116 453780 663980 161.97 680000 753210 796160 531170 351270 409580 467680 550110 422520 619620 41967 694320 716640 793910 546630 383080 426990 451970 526320 1 1 1 1 1 1 1 1 1 1 1 453780 663980 161.97 680000 753210 796160 531170 351270 409580 467680 550110 422520 619620 41967 694320 716640 793910 546630 383080 426990 451970 526320 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42114000 42114000 0 15745 2956 14442 81232 98231 98231 1 RALIAGGGAPEIELALR Unmodified 1705.9839 0.98390301 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 58.807 58.891 3 2.0102E-05 17189 20211116_3447_TMUAki_TMT10x_S_F8 90.828 64.889 9597600 16009000 60754 16629000 11984000 12562000 11924000 8998200 7773000 8477600 11181000 8936800 14940000 885760 16860000 11493000 12968000 11970000 9313000 8210300 8301100 10681000 2 2 2 2 2 2 2 2 2 2 2 6526500 10308000 26538 11175000 8242200 9509600 8470600 5119200 4442900 4914900 7221900 6077000 9622000 589850 11315000 7910300 9691800 8455400 5420300 4794800 4808600 6880600 1 1 1 1 1 1 1 1 1 1 1 3071100 5700400 34216 5454000 3742300 3052200 3453800 3879000 3330100 3562700 3959300 2859800 5318200 295900 5545500 3583100 3276100 3514600 3892700 3415600 3492500 3799900 1 1 1 1 1 1 1 1 1 1 1 1627900000 442750000 1185200000 15746 1147 14443 81233;81234 98232;98233 98233 2 RALVAIGTHDLDTLSGPFTYTAK Unmodified 2446.2856 0.28562392 2941 Q9NSD9;Q9NSD9-2 FARSB Phenylalanine--tRNA ligase beta subunit yes no 0 0 0 1 By MS/MS 2 0 1 1 68.2 67.89 4 9.5953E-28 22943 20211116_3429_TMUAki_TMT10x_P_F2 162.81 146.12 5049900 7827900 80857 9448400 5136200 9276200 5973800 4328600 4510700 4562100 6209300 4702600 7310300 495240 9521900 4950800 9349400 5970400 4657700 4713100 4446000 5937300 2 2 2 2 2 2 2 2 2 2 2 5049900 7827900 80857 9448400 5136200 9276200 5973800 4328600 4510700 4562100 6209300 4702600 7310300 495240 9521900 4950800 9349400 5970400 4657700 4713100 4446000 5937300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 536930000 536930000 0 15747 2941 14444 81235 98234;98235 98234 2 RALVILAK Unmodified 882.60147 0.60147217 2578 Q99497 PARK7 Protein deglycase DJ-1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.1 1.14 1 2 3 3 1 7 3 44.28 44.307 2;3 6.5225E-05 12091 20211116_3431_TMUAki_TMT10x_P_F4 170.73 108.01 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15748 2578 14445 81236;81237;81238;81239;81240;81241;81242;81243;81244;81245 98236;98237;98238;98239;98240;98241;98242;98243;98244;98245 98239 10 RAPEEELPPLDPEEIR Unmodified 1888.9531 0.95305639 2163 Q8IY67-2;Q8IY67;Q8IY67-3 RAVER1 Ribonucleoprotein PTB-binding 1 yes no 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 51.92 51.695 3 0.021258 15033 20211116_3440_TMUAki_TMT10x_S_F2 45.384 32.184 1240100 2236200 42390 2570400 1448000 1223400 1126200 1674300 1657400 1741700 1886000 1155000 2087800 145230 2578500 1382800 1339500 1175600 1681600 1671000 1698300 1812300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1240100 2236200 42390 2570400 1448000 1223400 1126200 1674300 1657400 1741700 1886000 1155000 2087800 145230 2578500 1382800 1339500 1175600 1681600 1671000 1698300 1812300 1 1 1 1 1 1 1 1 1 1 1 209670000 0 209670000 15749 2163 14446 81246;81247 98246 98246 1 RAPEEELPPLDPEEIRK Unmodified 2017.048 0.04801941 2163 Q8IY67-2;Q8IY67;Q8IY67-3 RAVER1 Ribonucleoprotein PTB-binding 1 yes no 0 0 0 2 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 48.936 49.021 4 3.0097E-06 15645 20211116_3430_TMUAki_TMT10x_P_F3 101.08 77.678 7678800 13103000 73634 15607000 12360000 13346000 8704100 9736100 10117000 8991100 10676000 7150100 12236000 748780 15711000 11763000 13654000 9063800 10059000 10251000 8811900 10282000 3 3 2 3 3 3 3 3 3 3 3 4599600 7791900 59298 8950900 9465000 11144000 6255200 5640400 6040000 5276900 6314300 4283000 7275000 482710 9082400 8996900 11094000 6506100 6001600 6163800 5168700 6082700 2 2 1 2 2 2 2 2 2 2 2 3079200 5311500 14336 6655800 2895300 2201700 2448900 4095800 4077300 3714200 4361700 2867200 4961200 266070 6628500 2765800 2560200 2557800 4057300 4086800 3643200 4198800 1 1 1 1 1 1 1 1 1 1 1 2019700000 1456900000 562870000 15750 2163 14447 81248;81249;81250 98247;98248;98249 98248 3 RAPFDLFENK Unmodified 1235.6299 0.62987176 553 P08238;Q58FF7 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 0 0 0 1 By MS/MS By MS/MS 5.78 2.1 2 2 2 4 4 4 9 9 56.64 56.823 2;3 4.7992E-19 17310 20211116_3433_TMUAki_TMT10x_P_F5 245.68 210.35 270530000 444320000 2493900 461830000 380060000 403420000 272520000 383470000 341580000 320250000 371720000 251880000 414660000 22479000 469030000 361620000 414140000 284190000 389000000 345550000 315370000 357650000 21 21 12 21 21 21 21 21 21 21 21 110940000 176100000 1257000 194250000 211120000 265920000 144340000 158890000 135730000 128840000 149730000 103290000 164380000 9724400 197960000 200700000 264080000 149640000 166050000 138960000 127070000 144000000 11 11 6 11 11 11 11 11 11 11 11 159590000 268220000 1236900 267580000 168940000 137500000 128180000 224580000 205850000 191410000 221990000 148590000 250280000 12755000 271070000 160920000 150060000 134550000 222950000 206590000 188310000 213650000 10 10 6 10 10 10 10 10 10 10 10 85020000000 49236000000 35784000000 15751 553 14448 81251;81252;81253;81254;81255;81256;81257;81258;81259;81260;81261;81262;81263;81264;81265;81266;81267;81268 98250;98251;98252;98253;98254;98255;98256;98257;98258;98259;98260;98261;98262;98263;98264;98265;98266;98267;98268;98269;98270;98271 98252 22 RAPFDLFENKK Unmodified 1363.7248 0.72483478 553 P08238;Q58FF7 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 0 0 0 2 By MS/MS By MS/MS 3.73 2.82 4 4 2 2 3 8 7 50.537 50.495 3;4 1.2808E-14 14304 20211116_3436_TMUAki_TMT10x_P_F8 191.23 161.97 143140000 225150000 2204400 292610000 313060000 288210000 163460000 226750000 204140000 180790000 212530000 133290000 210340000 15768000 293680000 296520000 292500000 174890000 232270000 206190000 178460000 204760000 22 22 16 22 22 22 22 22 22 22 22 90873000 139010000 1762700 182400000 266800000 251300000 131830000 145300000 132770000 115410000 133740000 84624000 129880000 11540000 184040000 252530000 249370000 140810000 152180000 135060000 113950000 128980000 12 12 9 12 12 12 12 12 12 12 12 52265000 86133000 441710 110210000 46262000 36909000 31631000 81455000 71368000 65374000 78789000 48664000 80461000 4227600 109640000 43989000 43123000 34080000 80088000 71129000 64510000 75775000 10 10 7 10 10 10 10 10 10 10 10 49862000000 33741000000 16121000000 15752 553 14449 81269;81270;81271;81272;81273;81274;81275;81276;81277;81278;81279;81280;81281;81282;81283 98272;98273;98274;98275;98276;98277;98278;98279;98280;98281;98282;98283;98284;98285;98286;98287;98288;98289;98290;98291;98292;98293 98280 22 RAPFDLFENR Unmodified 1263.636 0.63601977 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 1 By MS/MS By MS/MS 6.71 1.03 2 4 4 4 7 7 51.807 52.034 2;3 3.8083E-19 16054 20211116_3435_TMUAki_TMT10x_P_F7 248.14 224.77 50858000 87414000 516130 83408000 82641000 100960000 60996000 95535000 83239000 78647000 80790000 47356000 81552000 4821100 85636000 78706000 101640000 63692000 96902000 83621000 77506000 78011000 20 20 10 20 20 20 20 20 20 20 20 26847000 45038000 93271 43117000 53208000 75346000 39356000 48582000 42530000 39972000 41359000 24996000 42018000 2466700 44604000 50661000 74168000 40743000 50487000 43087000 39393000 39933000 11 11 5 11 11 11 11 11 11 11 11 24012000 42376000 422860 40291000 29433000 25610000 21641000 46954000 40709000 38675000 39431000 22360000 39534000 2354400 41031000 28044000 27475000 22949000 46414000 40534000 38113000 38077000 9 9 5 9 9 9 9 9 9 9 9 34267000000 17753000000 16515000000 15753 544 14450 81284;81285;81286;81287;81288;81289;81290;81291;81292;81293;81294;81295;81296;81297 98294;98295;98296;98297;98298;98299;98300;98301;98302;98303;98304;98305;98306;98307;98308;98309;98310;98311;98312;98313 98298 20 RAPFDLFENRK Unmodified 1391.731 0.73098279 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 2 By MS/MS By MS/MS 3.86 3 4 4 1 1 4 6 8 46.278 46.2 3;4 6.2487E-16 12387 20211116_3428_TMUAki_TMT10x_P_F1 210.79 185.26 78841000 126190000 470400 163170000 163670000 149840000 89101000 119900000 123690000 102250000 123300000 73410000 117890000 7894300 163650000 155070000 152800000 95349000 122890000 124300000 100590000 118960000 14 14 11 14 14 14 14 14 14 14 14 51640000 77882000 66094 105900000 135750000 127660000 68387000 76670000 78715000 63797000 78265000 48081000 72777000 5252300 106380000 128460000 127560000 73210000 80140000 79611000 62838000 75513000 7 7 4 7 7 7 7 7 7 7 7 27201000 48313000 404310 57269000 27921000 22179000 20714000 43235000 44972000 38458000 45035000 25330000 45115000 2642000 57267000 26616000 25233000 22139000 42753000 44692000 37757000 43442000 7 7 7 7 7 7 7 7 7 7 7 19417000000 12809000000 6608000000 15754 544 14451 81298;81299;81300;81301;81302;81303;81304;81305;81306;81307;81308;81309;81310;81311 98314;98315;98316;98317;98318;98319;98320;98321;98322;98323;98324;98325;98326;98327;98328 98315 15 RAPSSPVAKPGPVK Unmodified 1389.8092 0.80923311 2755 Q9GZR2;Q9GZR2-2 REXO4 RNA exonuclease 4 yes no 0 0 0 2 By MS/MS 3 0 1 1 31.995 31.75 4 0.013453 9749 20211116_3441_TMUAki_TMT10x_S_F3 58.817 40.086 199620 340600 2775.2 362400 212170 186160 230150 230020 272490 214270 293810 185890 317890 19312 365540 204060 201510 233830 231180 276120 209920 282770 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 199620 340600 2775.2 362400 212170 186160 230150 230020 272490 214270 293810 185890 317890 19312 365540 204060 201510 233830 231180 276120 209920 282770 1 1 1 1 1 1 1 1 1 1 1 17054000 0 17054000 15755 2755 14452 81312 98329 98329 1 RAQCYMDTEQYEEAVRDYEK Oxidation (M) 2599.0955 0.095516242 2590 Q99615;Q99615-2 DNAJC7 DnaJ homolog subfamily C member 7 yes no 0 0 1 2 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 45.883 45.883 4 4.2421E-13 12713 20211116_3431_TMUAki_TMT10x_P_F4 134.32 128.29 13581000 24106000 166360 27649000 24246000 29724000 16842000 21052000 23150000 18779000 19142000 12646000 22507000 1345500 27988000 23067000 29958000 17666000 21774000 23133000 18434000 18589000 6 6 2 6 6 6 6 6 6 6 6 9657900 17298000 166360 19542000 20981000 26473000 14179000 14920000 16373000 13171000 13586000 8993200 16149000 1053100 19881000 19953000 26281000 14806000 15700000 16462000 12935000 13192000 4 4 2 4 4 4 4 4 4 4 4 3923300 6808100 0 8107700 3265300 3251600 2663500 6132400 6777100 5608200 5555800 3652800 6357600 292390 8106800 3114200 3676800 2860500 6073900 6671100 5498900 5397300 2 2 0 2 2 2 2 2 2 2 2 1577200000 907710000 669450000 15756 2590 14453 81313;81314;81315;81316 98330;98331;98332;98333;98334;98335 98333 2824 6 RAQEEAERLEADR Unmodified 1571.7652 0.76519604 682 P15311 EZR Ezrin yes yes 0 0 0 2 By MS/MS By MS/MS 1 0 2 1 1 29.532 29.567 3 4.2562E-06 5848 20211116_3428_TMUAki_TMT10x_P_F1 114.56 82.495 80592 150550 6557.7 159250 148080 123920 108020 94883 96147 70683 127980 75088 140520 13738 161320 141370 127770 111290 97211 99463 70030 122480 2 2 2 2 2 2 2 2 2 2 2 41034 73283 2722 81120 101120 86826 64388 43001 53984 36696 61875 38227 68410 6780.5 82288 96204 87116 66910 45743 55655 36099 59445 1 1 1 1 1 1 1 1 1 1 1 39558 77271 3835.7 78132 46953 37094 43629 51882 42164 33987 66109 36861 72105 6958 79033 45170 40652 44383 51468 43808 33931 63032 1 1 1 1 1 1 1 1 1 1 1 6291500 3326200 2965300 15757 682 14454 81317;81318 98336;98337 98336 2 RAQEILSQLPIK Unmodified 1394.8245 0.82454882 943 P35754 GLRX Glutaredoxin-1 yes yes 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 57.26 57.15 3 0.00054131 17264 20211116_3440_TMUAki_TMT10x_S_F2 79.492 59.879 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15758 943 14455 81319;81320 98338;98339 98339 2 RARPAEVGGMQLR Unmodified 1439.7779 0.77794976 908 P33316;P33316-2 DUT Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial yes no 0 0 0 2 By MS/MS By MS/MS 1.75 0.829 4 2 2 4 4 29.582 29.477 3;4 1.2688E-11 7306 20211116_3429_TMUAki_TMT10x_P_F2 151.7 86.468 1322300 2053400 23343 2243800 2184600 2024700 1609100 1332600 1400100 1245000 1779800 1231300 1916700 137440 2272300 2081300 2060600 1655800 1387200 1446900 1219500 1705100 10 10 8 10 10 10 10 10 10 10 10 928640 1411700 16997 1538800 1776800 1683700 1183400 934950 985060 880520 1246300 864760 1317800 100960 1563000 1689500 1689400 1225200 986750 1020100 862200 1194200 6 6 5 6 6 6 6 6 6 6 6 393680 641640 6345.6 705010 407830 341010 425740 397620 415010 364470 533470 366590 598950 36480 709300 391730 371120 430580 400420 426870 357320 510950 4 4 3 4 4 4 4 4 4 4 4 110380000 78543000 31834000 15759 908 14456 81321;81322;81323;81324;81325;81326;81327;81328 98340;98341;98342;98343;98344;98345;98346;98347;98348 98342 9 RASALIDRPAPYFER Unmodified 1760.9322 0.93220179 3239 Q9Y2J2;Q9Y2J2-2;Q9Y2J2-4;Q9Y2J2-3 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed yes no 0 0 0 2 By MS/MS By MS/MS 4.25 3.27 2 1 1 3 1 39.101 39.24 4 1.2718E-23 11846 20211116_3439_TMUAki_TMT10x_S_F1 185.71 163.23 5472400 9352800 70328 9702600 10404000 11397000 6642300 8679400 8880400 7441100 8433300 5095700 8728500 495970 9898900 9884000 11445000 7003500 8924700 8920500 7318400 8149100 9 9 5 9 9 9 9 9 9 9 9 3724400 6276100 40152 6316400 8719100 9841900 5155300 5879600 5961800 5099900 5643500 3467900 5856400 323880 6493700 8271800 9719700 5440600 6154600 6018500 5013000 5453900 6 6 3 6 6 6 6 6 6 6 6 1748000 3076700 30176 3386200 1684700 1555300 1486900 2799800 2918600 2341200 2789800 1627800 2872000 172080 3405200 1612200 1725300 1562900 2770100 2902000 2305400 2695200 3 3 2 3 3 3 3 3 3 3 3 548790000 415820000 132970000 15760 3239 14457 81329;81330;81331;81332 98349;98350;98351;98352;98353;98354;98355;98356;98357 98357 9 RASGQAFELILSPR Unmodified 1543.8471 0.84707518 698 P16949;P16949-2 STMN1 Stathmin yes no 0 0 0 1 By MS/MS By MS/MS 3.52 2.2 4 5 6 2 1 1 2 2 10 13 55.269 55.205 2;3 1.5557E-49 17131 20211116_3439_TMUAki_TMT10x_S_F1 278.27 221.46 196720000 348200000 1598800 354860000 304250000 363030000 231180000 249840000 269180000 249380000 286800000 183170000 324940000 15027000 361670000 289920000 366780000 239490000 259720000 272800000 243570000 276120000 37 37 21 37 37 37 37 37 37 37 37 110570000 179330000 527770 182790000 191250000 281030000 150190000 135060000 146320000 140080000 148780000 102940000 167340000 9748800 187700000 182320000 276960000 154370000 144840000 149110000 136600000 143450000 16 16 7 16 16 16 16 16 16 16 16 86154000 168880000 1071000 172070000 113000000 81995000 80984000 114770000 122860000 109300000 138020000 80225000 157590000 5278600 173970000 107600000 89824000 85116000 114880000 123700000 106970000 132670000 21 21 14 21 21 21 21 21 21 21 21 136270000000 78089000000 58177000000 15761 698 14458 81333;81334;81335;81336;81337;81338;81339;81340;81341;81342;81343;81344;81345;81346;81347;81348;81349;81350;81351;81352;81353;81354;81355 98358;98359;98360;98361;98362;98363;98364;98365;98366;98367;98368;98369;98370;98371;98372;98373;98374;98375;98376;98377;98378;98379;98380;98381;98382;98383;98384;98385;98386;98387;98388;98389;98390;98391;98392;98393;98394;98395 98376 38 RASLTLEEK Unmodified 1045.5768 0.57677356 1998 Q6P3W7 SCYL2 SCY1-like protein 2 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 33.877 33.942 3 0.0017498 6959 20211116_3444_TMUAki_TMT10x_S_F5 81.923 34.663 1262200 1971200 15036 2023700 2215700 2431500 1548900 1504200 1498400 1436000 1804400 1175400 1839500 132010 2066900 2108700 2431100 1604400 1574100 1537400 1405300 1731200 2 2 2 2 2 2 2 2 2 2 2 894920 1379700 12321 1373900 1865700 2121100 1187900 1081600 1072900 1027300 1322700 833350 1287400 99274 1413200 1772600 2091400 1236800 1150600 1105400 1005600 1268300 1 1 1 1 1 1 1 1 1 1 1 367300 591470 2715.1 649740 350000 310490 360990 422530 425460 408670 481690 342010 552130 32740 653660 336040 339750 367590 423530 432010 399700 462930 1 1 1 1 1 1 1 1 1 1 1 105920000 79504000 26417000 15762 1998 14459 81356;81357 98396;98397 98397 2 RASVCAEAYNPDEEEDDAESR Unmodified 2411.9772 0.97717525 886 P31323 PRKAR2B cAMP-dependent protein kinase type II-beta regulatory subunit yes yes 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 33.696 33.663 3 8.259E-45 7431 20211116_3428_TMUAki_TMT10x_P_F1 215 213.7 624120 1031700 115.76 1222900 1658000 1098300 752960 665230 864310 533170 940460 581100 963400 62517 1232200 1566900 1116800 814530 694260 877110 526160 904870 4 4 1 4 4 4 4 4 4 4 4 416110 650790 115.76 758790 1436700 930340 490920 423940 549570 326530 595060 387430 607660 47416 769030 1353700 925810 549230 453670 558140 322920 572630 2 2 1 2 2 2 2 2 2 2 2 208010 380910 0 464080 221350 167930 262040 241300 314740 206630 345400 193670 355740 15101 463140 213200 190990 265300 240590 318970 203230 332240 2 2 0 2 2 2 2 2 2 2 2 258120000 203540000 54574000 15763 886 14460 81358;81359;81360;81361 98398;98399;98400;98401 98398 4 RASVFVK Unmodified 805.48102 0.48102268 1137 P50502;Q8IZP2;Q8NFI4 ST13;ST13P4;ST13P5 Hsc70-interacting protein;Putative protein FAM10A4;Putative protein FAM10A5 yes no 0 0 0 1 By MS/MS By MS/MS 2.2 1.17 2 1 1 1 3 2 33.308 33.223 3 0.0020654 10274 20211116_3441_TMUAki_TMT10x_S_F3 117.4 79.161 11527000 18443000 55601 18521000 16280000 17081000 14427000 11446000 12632000 11070000 15006000 10733000 17210000 1048800 18868000 15565000 17363000 14675000 11911000 13014000 10827000 14402000 5 5 3 5 5 5 5 5 5 5 5 7775900 12570000 23494 12574000 12732000 13983000 10591000 7946500 8743800 7623900 10541000 7240200 11729000 717940 12848000 12155000 14023000 10798000 8374500 9039900 7459200 10113000 3 3 2 3 3 3 3 3 3 3 3 3751400 5873300 32107 5947600 3547700 3097600 3835800 3499700 3888400 3445800 4464400 3493100 5480700 330880 6019700 3410400 3340500 3877400 3536300 3974000 3367600 4288800 2 2 1 2 2 2 2 2 2 2 2 495300000 296660000 198640000 15764 1137 14461 81362;81363;81364;81365;81366 98402;98403;98404;98405;98406 98406 5 RATTGTQTLLSSGTR Unmodified 1548.822 0.82198264 2151 Q8IX01;Q8IX01-4;Q8IX01-3 SUGP2 SURP and G-patch domain-containing protein 2 yes no 0 0 0 1 By MS/MS 1 0 1 1 30.756 30.756 3 9.1443E-07 6319 20211116_3428_TMUAki_TMT10x_P_F1 114.06 108.22 54351 99645 2314.8 104670 145790 154340 79081 78635 85733 67879 105430 50623 92998 7944.1 107160 138260 152470 83910 83450 87627 66737 101090 1 1 1 1 1 1 1 1 1 1 1 54351 99645 2314.8 104670 145790 154340 79081 78635 85733 67879 105430 50623 92998 7944.1 107160 138260 152470 83910 83450 87627 66737 101090 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12306000 12306000 0 15765 2151 14462 81367 98407 98407 1 RATVAPEDVSEVIFGHVLAAGCGQNPVR Unmodified 2948.4927 0.49267336 2706 Q9BWD1;Q9BWD1-2 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes no 0 0 0 1 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 70.879 70.793 4 2.4249E-25 24473 20211116_3439_TMUAki_TMT10x_S_F1 156.47 146.75 17686000 30065000 259950 27327000 19125000 18400000 19780000 15776000 13174000 15021000 20925000 16469000 28044000 1674000 27938000 18367000 19237000 19825000 16150000 13966000 14702000 19945000 5 5 4 5 5 5 5 5 5 5 5 4168000 6821900 99712 5459500 3789100 6624600 4762000 4309600 3601700 3881900 4875100 3881600 6360400 433180 5683200 3663600 6624900 4743500 4485800 3760000 3808900 4663400 1 1 1 1 1 1 1 1 1 1 1 13518000 23243000 160240 21868000 15336000 11776000 15018000 11466000 9572300 11139000 16050000 12587000 21683000 1240800 22255000 14703000 12612000 15081000 11664000 10206000 10893000 15282000 4 4 3 4 4 4 4 4 4 4 4 3790400000 1106200000 2684200000 15766 2706 14463 81368;81369;81370 98408;98409;98410;98411;98412 98409 5 RATVLESEGTR Unmodified 1217.6364 0.6364137 3148 Q9UJZ1;Q9UJZ1-2 STOML2 Stomatin-like protein 2, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 28.14 27.856 3 2.2911E-06 8219 20211116_3441_TMUAki_TMT10x_S_F3 121.21 97.684 123710 233430 0 192540 121200 110230 139950 77887 87069 105100 136590 115160 217660 7291.4 198080 116500 116650 139340 81637 92649 101520 130230 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 123710 233430 0 192540 121200 110230 139950 77887 87069 105100 136590 115160 217660 7291.4 198080 116500 116650 139340 81637 92649 101520 130230 1 1 0 1 1 1 1 1 1 1 1 14531000 0 14531000 15767 3148 14464 81371;81372 98413;98414 98414 2 RATVNTFGYIAK Unmodified 1339.7248 0.72483478 345 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0 2 1 1 44.059 43.908 3 3.2156E-06 13512 20211116_3430_TMUAki_TMT10x_P_F3 115.57 85.767 1531300 2554900 53774 3214500 2538500 2387400 1765500 2279800 2487200 1815600 2500100 1426200 2386500 191180 3220400 2417800 2480700 1853600 2309500 2499200 1792300 2411400 2 2 2 2 2 2 2 2 2 2 2 649440 1019700 24139 1347800 1617900 1644800 1039000 887300 917370 664200 1052900 604870 952700 89903 1356200 1538200 1640300 1080400 933700 943400 657880 1011500 1 1 1 1 1 1 1 1 1 1 1 881910 1535200 29635 1866800 920570 742580 726490 1392500 1569900 1151400 1447200 821360 1433800 101280 1864200 879600 840440 773170 1375800 1555800 1134400 1399900 1 1 1 1 1 1 1 1 1 1 1 145510000 59663000 85850000 15768 345 14465 81373;81374 98415;98416 98415 2 RATVVESSEK Unmodified 1104.5775 0.57750184 1331 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 1.12 1 1 1 1 3 1 28.044 27.941 3 1.1828E-09 6729 20211116_3429_TMUAki_TMT10x_P_F2 157.68 116.03 327790 619750 4295.7 535250 358980 403130 367780 198890 258090 237730 364120 305240 577980 31616 550040 344680 414240 369200 213690 271120 230580 347970 2 2 2 2 2 2 2 2 2 2 2 184850 324920 2883.1 290180 173790 267490 163720 112720 147220 133500 183320 172140 303060 17858 298150 166560 270420 166090 123040 151780 129530 175730 1 1 1 1 1 1 1 1 1 1 1 142940 294830 1412.6 245070 185180 135640 204060 86167 110870 104230 180800 133100 274920 13759 251890 178120 143820 203110 90646 119350 101050 172240 1 1 1 1 1 1 1 1 1 1 1 24991000 15761000 9229800 15769 1331 14466 81375;81376;81377;81378 98417;98418;98419 98417 3 RAVAGDASESALLK Unmodified 1386.7467 0.74669243 497 P05023;P05023-3;P05023-4;P05023-2 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes no 0 0 0 1 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 38.181 38.327 3 1.9589E-09 8877 20211116_3444_TMUAki_TMT10x_S_F5 133.47 76.687 1012300 1638800 0 1993100 848290 630440 832900 781440 1020600 778920 1354700 942560 1530500 80316 1987900 812910 729690 851460 786820 1042000 760830 1296500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1012300 1638800 0 1993100 848290 630440 832900 781440 1020600 778920 1354700 942560 1530500 80316 1987900 812910 729690 851460 786820 1042000 760830 1296500 1 1 0 1 1 1 1 1 1 1 1 64815000 0 64815000 15770 497 14467 81379;81380;81381 98420;98421;98422 98422 3 RAVDLIQK Unmodified 941.56581 0.56581494 978 P39748;P39748-2 FEN1 Flap endonuclease 1 yes no 0 0 0 1 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 36.246 36.562 3 0.0025648 7945 20211116_3447_TMUAki_TMT10x_S_F8 97.857 50.283 2185500 3400100 128470 3583500 3062500 3454300 2625700 1908000 1952700 1911200 2604800 2035800 3173300 313200 3640900 2933300 3492200 2665300 2018100 2039100 1866400 2492500 5 5 5 5 5 5 5 5 5 5 5 1788600 2724300 113660 2906400 2595300 3123500 2114400 1554600 1591100 1563200 2119300 1666200 2542700 265520 2955400 2483300 3133300 2153700 1660000 1660300 1526400 2028100 4 4 4 4 4 4 4 4 4 4 4 396870 675800 14803 677070 467200 330790 511260 353440 361630 347950 485470 369640 630600 47684 685450 449980 358850 511660 358040 378840 340050 464480 1 1 1 1 1 1 1 1 1 1 1 162630000 96638000 65988000 15771 978 14468 81382;81383;81384;81385 98423;98424;98425;98426;98427 98427 5 RAVEFQEAQAYADDNSLLFMETSAK Oxidation (M) 2849.3178 0.31778826 1150 P51148;P51148-2 RAB5C Ras-related protein Rab-5C yes no 0 0 1 1 By MS/MS 4 0 1 1 67.005 67.093 4 0.0042315 21436 20211116_3431_TMUAki_TMT10x_P_F4 50.029 42.583 3702700 5949700 0 5290800 3438900 6578400 4003700 2678500 3935900 3428000 3952600 3446700 5549300 190790 5463300 3304300 6534600 4029500 2942600 4007600 3317100 3812400 1 1 0 1 1 1 1 1 1 1 1 3702700 5949700 0 5290800 3438900 6578400 4003700 2678500 3935900 3428000 3952600 3446700 5549300 190790 5463300 3304300 6534600 4029500 2942600 4007600 3317100 3812400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 820740000 820740000 0 15772 1150 14469 81386 98428 98428 1534 1 RAVIILR Unmodified 839.57051 0.57050639 2001 Q6P6C2;Q6P6C2-1;Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 yes no 0 0 0 1 By MS/MS 5 0 1 1 32.933 33.111 3 0.028249 6768 20211116_3444_TMUAki_TMT10x_S_F5 69.176 8.3769 60562 95129 2376.2 116210 61974 103160 86704 69900 83073 84684 83446 56407 88844 7255.3 116870 60189 105150 86543 73191 84685 82098 80486 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 60562 95129 2376.2 116210 61974 103160 86704 69900 83073 84684 83446 56407 88844 7255.3 116870 60189 105150 86543 73191 84685 82098 80486 1 1 1 1 1 1 1 1 1 1 1 2991200 0 2991200 15773 2001 14470 81387 98429 98429 1 RAYETMAGAGVPFSANGRPLASGIR Oxidation (M) 2564.2918 0.29178871 384 O94776;O94776-2 MTA2 Metastasis-associated protein MTA2 yes no 0 0 1 2 By MS/MS 3 0.816 1 1 1 3 42.479 42.454 4 0.00131 14059 20211116_3441_TMUAki_TMT10x_S_F3 59.687 38.486 1533100 2264900 11313 2962600 1113500 1211600 919290 2750200 3049200 2279900 2279500 1427600 2116000 131770 2946900 1063500 1376900 1008600 2704500 2981500 2246000 2222800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1533100 2264900 11313 2962600 1113500 1211600 919290 2750200 3049200 2279900 2279500 1427600 2116000 131770 2946900 1063500 1376900 1008600 2704500 2981500 2246000 2222800 1 1 1 1 1 1 1 1 1 1 1 279310000 0 279310000 15774 384 14471 81388;81389;81390 98430 98430 295 1 RAYFDLQTHVIQVPQGK Unmodified 1999.0639 0.063944246 2296 Q8WUB8;Q8WUB8-2;Q8WUB8-3 PHF10 PHD finger protein 10 yes no 0 0 0 1 By MS/MS 2 0 1 1 52.716 52.462 4 1.5608E-07 16560 20211116_3429_TMUAki_TMT10x_P_F2 102.78 86.638 2198000 3742400 0 3825200 3561000 6457800 3140900 4087900 3475900 3441700 3627200 2046300 3492400 171730 3935900 3402000 6363100 3218300 4256600 3526900 3388000 3494400 1 1 0 1 1 1 1 1 1 1 1 2198000 3742400 0 3825200 3561000 6457800 3140900 4087900 3475900 3441700 3627200 2046300 3492400 171730 3935900 3402000 6363100 3218300 4256600 3526900 3388000 3494400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 598150000 598150000 0 15775 2296 14472 81391 98431 98431 1 RAYGTNYIETLR Unmodified 1455.747 0.74702678 3344 Q9Y6A4 CFAP20 Cilia- and flagella-associated protein 20 yes yes 0 0 0 1 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 39.182 39.443 3 8.897E-17 9796 20211116_3436_TMUAki_TMT10x_P_F8 208.27 157.26 2494200 3590600 28494 4171900 4563900 3649700 2613900 3472000 3319100 3658600 3412900 2322600 3352500 262330 4207100 4328800 3746300 2775200 3544700 3349000 3565500 3289400 4 4 4 4 4 4 4 4 4 4 4 1181000 1689400 26283 2010900 3170500 2743600 1628100 1626100 1578700 1631900 1561400 1099800 1577600 150270 2039700 3002800 2724700 1730500 1709900 1607600 1593500 1506700 2 2 2 2 2 2 2 2 2 2 2 1313300 1901200 2210.7 2161000 1393500 906060 985860 1845900 1740400 2026700 1851500 1222800 1775000 112060 2167500 1326000 1021600 1044700 1834800 1741400 1971900 1782700 2 2 2 2 2 2 2 2 2 2 2 610630000 439600000 171030000 15776 3344 14473 81392;81393;81394;81395 98432;98433;98434;98435 98433 4 RCDIIIISGR Unmodified 1201.6601 0.66012603 1467 Q00341;Q00341-2 HDLBP Vigilin yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 38.406 38.784 3 0.00022409 9483 20211116_3436_TMUAki_TMT10x_P_F8 110.64 90.85 11105000 16616000 1724000 23872000 9193400 21205000 9222200 9453000 9795200 10058000 14667000 10353000 15532000 2500600 23801000 8920200 21503000 9370700 10222000 10113000 9798300 13998000 3 3 3 3 3 3 3 3 3 3 3 5736600 8351400 893160 13534000 3315800 15016000 1257900 4974700 4806900 5063800 7258200 5348000 7812100 1274100 13463000 3181800 14981000 1493400 5567300 4821900 4941900 6925800 2 2 2 2 2 2 2 2 2 2 2 5368600 8264800 830810 10338000 5877500 6188500 7964300 4478400 4988300 4994300 7408400 5004900 7719700 1226500 10338000 5738400 6522000 7877300 4655100 5290800 4856400 7071700 1 1 1 1 1 1 1 1 1 1 1 145250000 74810000 70435000 15777 1467 14474 81396;81397;81398 98436;98437;98438 98437 3 RCEFVMEVTNK Unmodified 1411.6588 0.6588054 1868 Q16851;Q16851-2 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 0 0 0 1 By MS/MS 6 0 1 1 44.9 44.975 3 0.10646 11413 20211116_3434_TMUAki_TMT10x_P_F6 36.572 23.372 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15778 1868 14475 81399 98439 98439 1 RCEPIAMTVPR Oxidation (M) 1344.6642 0.66422513 883 P31146 CORO1A Coronin-1A yes yes 0 0 1 1 By MS/MS 5 0 1 1 29.817 29.75 3 0.00016528 6606 20211116_3433_TMUAki_TMT10x_P_F5 91.093 77.007 244060 376840 0 356910 409200 477650 273540 255090 251800 610140 330830 227200 351560 16490 367320 388550 474150 283890 281220 259920 581260 316700 1 1 0 1 1 1 1 1 1 1 1 244060 376840 0 356910 409200 477650 273540 255090 251800 610140 330830 227200 351560 16490 367320 388550 474150 283890 281220 259920 581260 316700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19198000 19198000 0 15779 883 14476 81400 98440 98440 1057 1 RCGVQSFYTPR Unmodified 1369.6561 0.65610329 2098 Q7Z7K6-3;Q7Z7K6;Q7Z7K6-2 CENPV Centromere protein V yes no 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 33.429 33.317 3 1.7646E-14 10310 20211116_3441_TMUAki_TMT10x_S_F3 182.71 133.62 1033600 1660300 17415 2170200 2522400 1862300 1224100 1093600 1263500 1030400 1495600 962530 1551100 122780 2173300 2387000 1898900 1310700 1148800 1291900 1009000 1435600 3 3 3 3 3 3 3 3 3 3 3 703320 1115300 11438 1424500 2246200 1620800 967040 773920 922920 741170 988680 654950 1041900 90579 1434400 2122300 1620100 1046400 828630 943180 725220 951710 2 2 2 2 2 2 2 2 2 2 2 330300 544930 5976.6 745670 276220 241510 257050 319640 340550 289270 506910 307590 509230 32197 738990 264730 278880 264320 320140 348700 283770 483840 1 1 1 1 1 1 1 1 1 1 1 182950000 116150000 66796000 15780 2098 14477 81401;81402;81403;81404 98441;98442;98443 98443 3 RCILPFDKETGFHR Unmodified 1774.8937 0.8937078 2759 Q9GZT3;Q9GZT3-2 SLIRP SRA stem-loop-interacting RNA-binding protein, mitochondrial yes no 0 0 0 2 By MS/MS By MS/MS 2 0 2 1 1 42.37 42.244 5 7.4381E-19 12477 20211116_3429_TMUAki_TMT10x_P_F2 166.03 138.18 2612000 4395700 67561 4502800 4326500 4463700 2948700 2390600 2311100 2337700 3315700 2432600 4102100 303530 4585500 4117900 4503100 3043300 2533600 2414700 2285300 3167400 3 3 3 3 3 3 3 3 3 3 3 1984000 3285000 60551 3432300 3644500 3868100 2394900 1841200 1758400 1843500 2490300 1847800 3065800 244180 3497600 3466800 3868200 2474900 1974400 1842700 1800400 2379700 2 2 2 2 2 2 2 2 2 2 2 627990 1110700 7010.7 1070500 682020 595520 553840 549350 552680 494190 825390 584770 1036300 59355 1087900 651150 634940 568450 559220 571990 484930 787780 1 1 1 1 1 1 1 1 1 1 1 121810000 70296000 51513000 15781 2759 14478 81405;81406 98444;98445;98446 98444 3 RCLYASVLTAQPR Unmodified 1533.8086 0.80858118 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 1 By MS/MS By MS/MS 4.14 0.833 2 2 3 4 3 42.426 42.465 2;3 4.6354E-36 14126 20211116_3441_TMUAki_TMT10x_S_F3 264.29 232.23 11626000 17639000 146470 20001000 18649000 16178000 11952000 14564000 12956000 15276000 15620000 10826000 16468000 1168200 20181000 17720000 16680000 12505000 14910000 13231000 14890000 14986000 9 9 7 9 9 9 9 9 9 9 9 5823800 7939500 84884 9329500 12880000 12163000 7634900 6831600 6109600 7871100 7591200 5423100 7413600 654750 9461800 12223000 12096000 7971400 7246100 6334700 7644500 7277100 4 4 3 4 4 4 4 4 4 4 4 5802400 9699800 61589 10672000 5768300 4015200 4317300 7732100 6846500 7405200 8029200 5402900 9054500 513480 10719000 5496600 4584500 4533400 7664100 6896400 7245800 7708900 5 5 4 5 5 5 5 5 5 5 5 4015300000 2285100000 1730300000 15782 653 14479 81407;81408;81409;81410;81411;81412;81413 98447;98448;98449;98450;98451;98452;98453;98454;98455;98456 98453 10 RCNTLITLIER Unmodified 1387.7606 0.76056836 260 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 0 0 0 1 By MS/MS By MS/MS 3.33 3.3 2 1 1 2 49.908 49.777 3 6.1266E-15 13891 20211116_3428_TMUAki_TMT10x_P_F1 194.06 159.25 9603800 15374000 4566.1 15228000 9272300 9233600 9189400 9416900 9030900 9468600 11415000 8941800 14345000 748410 15456000 8885800 9780500 9320600 9566800 9279000 9245400 10938000 2 2 1 2 2 2 2 2 2 2 2 1438500 2284000 4566.1 2580500 2472600 3200100 1774200 1919800 1655100 1823400 1871400 1339400 2132300 138000 2620900 2353600 3193100 1832500 2013700 1696700 1784800 1798500 1 1 1 1 1 1 1 1 1 1 1 8165300 13090000 0 12648000 6799700 6033500 7415200 7497100 7375800 7645100 9543800 7602300 12213000 610410 12835000 6532200 6587400 7488200 7553100 7582300 7460500 9139500 1 1 0 1 1 1 1 1 1 1 1 343400000 223170000 120230000 15783 260 14480 81414;81415;81416 98457;98458;98459 98457 3 RCTYLVLDEADR Unmodified 1509.7246 0.72457678 2368 Q92841;Q92841-3;Q92841-1;Q92841-2 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 40.777 40.653 3 7.9292E-06 11879 20211116_3430_TMUAki_TMT10x_P_F3 105.46 84.159 1169800 1886000 0 1984700 1362400 1203900 1072700 1638300 1675700 1379900 1634100 1089100 1760200 87731 2006100 1298300 1284400 1121900 1636000 1676900 1358400 1577600 2 2 0 2 2 2 2 2 2 2 2 217220 335540 0 395710 461300 406410 262100 227420 237180 201960 255220 202250 313320 20514 399600 437250 409340 275500 239500 243020 198300 245640 1 1 0 1 1 1 1 1 1 1 1 952620 1550500 0 1589000 901100 797520 810580 1410800 1438600 1178000 1378900 886890 1446900 67217 1606500 861020 875070 846380 1396500 1433900 1160100 1332000 1 1 0 1 1 1 1 1 1 1 1 100350000 25598000 74749000 15784 2368 14481 81417;81418;81419;81420 98460;98461;98462;98463 98460 4 RCVYTIPAHQNLVTGVK Unmodified 1955.0411 0.041100314 200 O43172;O43172-2 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes no 0 0 0 1 By MS/MS 3 0 1 1 42.351 42.036 4 0.012481 13937 20211116_3441_TMUAki_TMT10x_S_F3 47.397 28.666 705900 1085000 13091 1154600 621580 634990 763570 676780 790960 759260 939600 657360 1012700 69544 1165200 600360 679880 767950 688460 808750 738140 901800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 705900 1085000 13091 1154600 621580 634990 763570 676780 790960 759260 939600 657360 1012700 69544 1165200 600360 679880 767950 688460 808750 738140 901800 1 1 1 1 1 1 1 1 1 1 1 60232000 0 60232000 15785 200 14482 81421 98464 98464 1 RDDGSWEVIEGYR Unmodified 1580.7219 0.72193424 463 P00367;P49448 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 0 0 0 1 By MS/MS 3 0 1 1 49.54 49.183 3 1.9217E-08 16798 20211116_3441_TMUAki_TMT10x_S_F3 111.81 98.145 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15786 463 14483 81422 98465 98465 1 RDFAPPGQQKR Unmodified 1298.6844 0.68436695 2691 Q9BVC6 TMEM109 Transmembrane protein 109 yes yes 0 0 0 2 By MS/MS By MS/MS 1 0 2 1 1 28.469 28.516 4 0.0026312 5474 20211116_3428_TMUAki_TMT10x_P_F1 77.124 62.966 175120 329040 4632.4 242620 222660 267510 209520 152700 127790 138910 217940 163090 306710 19502 253980 213450 268410 210680 160640 136780 136240 207450 2 2 2 2 2 2 2 2 2 2 2 93021 175610 2288.9 132750 126360 171000 103650 83858 66063 74176 112050 86628 163700 10312 139020 120720 169890 105160 89369 70484 72843 106670 1 1 1 1 1 1 1 1 1 1 1 82097 153440 2343.5 109870 96305 96506 105870 68845 61724 64737 105890 76458 143010 9189.4 114960 92724 98516 105520 71270 66292 63394 100780 1 1 1 1 1 1 1 1 1 1 1 6214600 4072500 2142100 15787 2691 14484 81423;81424 98466;98467 98466 2 RDFNHINVELSLLGK Unmodified 1753.9475 0.9475175 904 P32969 RPL9 60S ribosomal protein L9 yes yes 0 0 0 1 By MS/MS 8 0 2 2 60.982 61.17 3;4 1.4802E-19 18613 20211116_3436_TMUAki_TMT10x_P_F8 170.11 104.72 5270600 8134700 40352 8414200 5844400 10539000 6546900 5448300 4767000 5305000 5012500 4907800 7591600 482610 8595900 5624000 10491000 6549000 5792100 4936200 5187000 4827700 2 2 2 2 2 2 2 2 2 2 2 5270600 8134700 40352 8414200 5844400 10539000 6546900 5448300 4767000 5305000 5012500 4907800 7591600 482610 8595900 5624000 10491000 6549000 5792100 4936200 5187000 4827700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 525050000 525050000 0 15788 904 14485 81425;81426 98468;98469;98470 98468 3 RDHFEEAMR Unmodified 1189.5298 0.52984014 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 28.098 28.147 3 0.028261 8500 20211116_3441_TMUAki_TMT10x_S_F3 59.367 33.473 272740 409810 4886.9 364890 350800 487770 273480 291700 276690 241340 346320 253980 382230 28259 377260 334710 484920 281540 304970 283820 237780 331930 1 1 1 1 1 1 1 1 1 1 1 272740 409810 4886.9 364890 350800 487770 273480 291700 276690 241340 346320 253980 382230 28259 377260 334710 484920 281540 304970 283820 237780 331930 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4998200 4998200 0 15789 1235 14486 81427;81428 98471;98472 98472 2 RDNYVPEVSALDQEIIEVDPDTK Unmodified 2644.2868 0.28680571 562 P08708 RPS17 40S ribosomal protein S17 yes yes 0 0 0 1 By MS/MS By MS/MS 2.08 0.954 4 4 3 1 6 6 74.189 74.07 3;4 1.5333E-36 25773 20211116_3439_TMUAki_TMT10x_S_F1 191.73 174.25 46953000 78907000 455250 72736000 51437000 61569000 53788000 36394000 39142000 40791000 54015000 43720000 73606000 4221500 74472000 49397000 62846000 53984000 38405000 40989000 39658000 51646000 16 16 10 16 16 16 16 16 16 16 16 21171000 35098000 109040 31766000 19961000 35998000 24253000 17521000 18643000 19151000 24061000 19713000 32738000 1758000 32706000 19248000 35996000 24203000 18796000 19404000 18637000 23043000 8 8 5 8 8 8 8 8 8 8 8 25782000 43809000 346210 40970000 31477000 25571000 29536000 18872000 20498000 21640000 29954000 24007000 40868000 2463500 41766000 30148000 26850000 29781000 19609000 21585000 21021000 28603000 8 8 5 8 8 8 8 8 8 8 8 12790000000 7266800000 5523600000 15790 562 14487 81429;81430;81431;81432;81433;81434;81435;81436;81437;81438;81439;81440 98473;98474;98475;98476;98477;98478;98479;98480;98481;98482;98483;98484;98485;98486;98487;98488;98489 98483 17 RDPEDSDVFEEDTHL Unmodified 1802.7595 0.75950154 3029 Q9NZ53;Q9NZ53-2 PODXL2 Podocalyxin-like protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 48.258 48.133 3 5.2849E-10 13263 20211116_3428_TMUAki_TMT10x_P_F1 115.82 110.74 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15791 3029 14488 81441;81442 98490;98491 98490 2 RDPGVITYDLPTPPGEK Unmodified 1853.9523 0.95232811 820 P26640 VARS Valine--tRNA ligase yes yes 0 0 0 1 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 53.347 53.514 3 9.9859E-11 15257 20211116_3445_TMUAki_TMT10x_S_F6 124.91 102.75 6989900 11010000 40074 12658000 8929600 10280000 7166000 8383500 8410900 7671900 9342500 6508500 10279000 641310 12762000 8520000 10576000 7399500 8598200 8535200 7522100 8983500 4 4 2 4 4 4 4 4 4 4 4 3620400 5564300 37531 6593000 6209400 7704100 4695300 4458900 4307600 3989300 4913000 3371200 5195900 370610 6669900 5918000 7707000 4829800 4683300 4420700 3915500 4720700 2 2 1 2 2 2 2 2 2 2 2 3369500 5445400 2543.7 6065400 2720200 2575500 2470700 3924600 4103300 3682600 4429400 3137300 5083500 270700 6091800 2602000 2869300 2569700 3914900 4114600 3606600 4262800 2 2 1 2 2 2 2 2 2 2 2 779120000 226010000 553110000 15792 820 14489 81443;81444;81445 98492;98493;98494;98495 98495 4 RDPGVITYDLPTPPGEKK Unmodified 1982.0473 0.047291129 820 P26640 VARS Valine--tRNA ligase yes yes 0 0 0 2 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 48.554 48.894 4 0.0001455 15377 20211116_3446_TMUAki_TMT10x_S_F7 77.871 68.122 12551000 20792000 133280 24746000 19426000 20095000 12566000 15331000 17047000 13918000 16510000 11687000 19416000 1224300 24896000 18460000 20652000 13244000 15786000 17127000 13651000 15943000 4 4 2 4 4 4 4 4 4 4 4 6576000 10669000 86284 13166000 14518000 16075000 9039300 8400600 9012800 7205500 8618300 6123300 9965100 701590 13299000 13785000 16024000 9454500 8892700 9156100 7086600 8326000 2 2 1 2 2 2 2 2 2 2 2 5974800 10123000 46998 11580000 4908500 4020500 3527000 6930800 8034000 6712300 7891500 5563500 9450900 522720 11598000 4674500 4627500 3789400 6893300 7970900 6564600 7617000 2 2 1 2 2 2 2 2 2 2 2 2329900000 1276000000 1053900000 15793 820 14490 81446;81447;81448;81449 98496;98497;98498;98499 98499 4 RDPHLACVAYER Unmodified 1485.7147 0.7146808 1471 Q00610;Q00610-2;P53675;P53675-2 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 1 By MS/MS By MS/MS 4.12 0.781 2 3 3 6 2 30.493 30.417 2;3;4 4.194E-29 6568 20211116_3431_TMUAki_TMT10x_P_F4 259.18 233.52 3306300 5432800 503540 6126000 7908800 6855300 5845300 4286100 5046100 2232200 3437300 3082200 5071900 799910 6211500 7561500 6881000 6012300 4426000 5111400 2264700 3365700 8 8 6 8 8 8 8 8 8 8 8 2167300 3364300 210860 4298100 6124600 4577900 3257300 2175800 2634700 1541600 2563100 2019500 3142700 423680 4323000 5812700 4592400 3434600 2314400 2705000 1531700 2474800 5 5 3 5 5 5 5 5 5 5 5 1138900 2068500 292680 1827900 1784200 2277300 2588000 2110300 2411400 690620 874230 1062700 1929200 376230 1888500 1748700 2288500 2577700 2111500 2406400 732990 890920 3 3 3 3 3 3 3 3 3 3 3 924460000 871550000 52906000 15794 1471 14491 81450;81451;81452;81453;81454;81455;81456;81457 98500;98501;98502;98503;98504;98505;98506;98507 98502 8 RDPTLLVSVVR Unmodified 1253.7456 0.74557022 280 O60645 EXOC3 Exocyst complex component 3 yes yes 0 0 0 1 By MS/MS 1 0 1 1 45.779 45.779 3 3.4178E-05 12337 20211116_3428_TMUAki_TMT10x_P_F1 101.43 71.621 929140 1243900 26491 1480200 1552300 1699100 1183800 982230 876520 904550 1121900 865320 1161600 110450 1496600 1480800 1701400 1210500 1032500 913860 886630 1074600 1 1 1 1 1 1 1 1 1 1 1 929140 1243900 26491 1480200 1552300 1699100 1183800 982230 876520 904550 1121900 865320 1161600 110450 1496600 1480800 1701400 1210500 1032500 913860 886630 1074600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 111370000 111370000 0 15795 280 14492 81458 98508 98508 1 RDPYGFGDSR Unmodified 1168.5261 0.52613497 2865 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 yes yes 0 0 0 1 By MS/MS 4 0 1 1 31.82 31.85 3 0.045796 7125 20211116_3431_TMUAki_TMT10x_P_F4 49.28 38.407 650240 1018500 3425.8 1099100 1527200 1330500 856790 661770 702520 633180 932860 605460 950650 69385 1119000 1447700 1326100 899360 705740 729620 619580 892770 1 1 1 1 1 1 1 1 1 1 1 650240 1018500 3425.8 1099100 1527200 1330500 856790 661770 702520 633180 932860 605460 950650 69385 1119000 1447700 1326100 899360 705740 729620 619580 892770 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20304000 20304000 0 15796 2865 14493 81459 98509 98509 1 RDQNYPGAIAIHHPNVAEK Unmodified 2129.0766 0.076634197 43 CON__P15636 yes yes 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 26.247 26.319 4;5 7.3663E-24 8198 20211116_3433_TMUAki_TMT10x_P_F5 166.28 142.83 + 3849900 6157000 92191 7675300 13003000 12366000 6168400 6498400 7304100 5346900 6546000 3585300 5750800 530740 7793000 12302000 12176000 6649500 6868800 7354100 5269500 6338200 3 3 2 3 3 3 3 3 3 3 3 3805900 6077500 90842 7585700 12961000 12324000 6121100 6440100 7232900 5286300 6476800 3544300 5676600 525860 7703000 12261000 12130000 6600900 6810200 7282800 5210400 6271400 2 2 1 2 2 2 2 2 2 2 2 44072 79464 1348.7 89542 42242 42252 47368 58368 71230 60691 69226 41045 74186 4885.2 89929 40714 46322 48518 58601 71349 59178 66841 1 1 1 1 1 1 1 1 1 1 1 1460400000 860740000 599650000 15797 43 14494 81460;81461;81462;81463 98510;98511;98512 98510 3 RDTLALLQK Unmodified 1056.6291 0.62914348 2816 Q9H6F5;Q9H6F5-2 CCDC86 Coiled-coil domain-containing protein 86 yes no 0 0 0 1 By MS/MS 8 0 1 1 47.71 47.815 3 0.018609 13243 20211116_3436_TMUAki_TMT10x_P_F8 62.536 33.16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15798 2816 14495 81464 98513 98513 1 RDVDFELIK Unmodified 1133.6081 0.60807369 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 51.599 51.784 3 0.0013407 15079 20211116_3431_TMUAki_TMT10x_P_F4 78.342 14.933 1716300 2892400 57227 3201100 1602400 1462000 1479400 1944600 1886800 1628500 2386000 1598500 2700000 194030 3217900 1536900 1607500 1519700 1943400 1919400 1603500 2286200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1716300 2892400 57227 3201100 1602400 1462000 1479400 1944600 1886800 1628500 2386000 1598500 2700000 194030 3217900 1536900 1607500 1519700 1943400 1919400 1603500 2286200 1 1 1 1 1 1 1 1 1 1 1 320710000 0 320710000 15799 1079 14496 81465;81466 98514;98515 98514 2 RDVQEIFR Unmodified 1061.5618 0.56179219 1665;63 O00148;O00148-2;O00148-3;Q13838;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B no no 0 0 0 1 By MS/MS 5 1 1 1 2 36.34 36.348 3 0.00099484 9225 20211116_3431_TMUAki_TMT10x_P_F4 117.89 81.495 1796800 2731800 27261 3271900 5761300 4858300 2829600 2960800 3117100 2548000 3063900 1673100 2551000 218900 3323400 5451500 4808800 3032400 3093800 3156600 2505500 2957300 3 3 1 3 3 3 3 3 3 3 3 1796800 2731800 27261 3271900 5761300 4858300 2829600 2960800 3117100 2548000 3063900 1673100 2551000 218900 3323400 5451500 4808800 3032400 3093800 3156600 2505500 2957300 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 149030000 149030000 0 15800 63;1665 14497 81467;81468 98516;98517;98518 98516 3 REAPVDVLTQIGR Unmodified 1452.8049 0.80487601 2691 Q9BVC6 TMEM109 Transmembrane protein 109 yes yes 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 48.88 49.037 3 8.091E-25 13024 20211116_3434_TMUAki_TMT10x_P_F6 198.85 150.28 2688700 4538300 123760 5527400 2259000 2083200 2226700 3410200 3417400 3003500 3737800 2504400 4238400 332230 5517500 2172800 2364500 2297200 3388100 3435800 2950100 3595800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2688700 4538300 123760 5527400 2259000 2083200 2226700 3410200 3417400 3003500 3737800 2504400 4238400 332230 5517500 2172800 2364500 2297200 3388100 3435800 2950100 3595800 2 2 2 2 2 2 2 2 2 2 2 260330000 0 260330000 15801 2691 14498 81469;81470 98519;98520;98521 98519 3 RECPSDECGAGVFMASHFDR Oxidation (M) 2342.9467 0.94668394 1387 P62979 RPS27A Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a yes yes 0 0 1 1 By MS/MS By MS/MS 4 0.816 1 1 1 1 2 35.552 35.643 4 9.3441E-07 7803 20211116_3444_TMUAki_TMT10x_S_F5 91.276 86.172 264490 451350 3713.7 545840 290650 270910 242660 315860 349250 277580 368870 246280 421510 24889 546060 277650 293950 251950 317730 351340 272670 355230 5 5 4 5 5 5 5 5 5 5 5 64199 106880 864.93 128390 135990 123300 93376 56401 52220 59432 92540 59782 99807 7134.1 129380 129370 124420 95670 60811 56357 57919 88022 2 2 2 2 2 2 2 2 2 2 2 200290 344470 2848.8 417450 154660 147610 149280 259460 297030 218150 276330 186500 321700 17755 416680 148270 169530 156280 256920 294980 214750 267210 3 3 2 3 3 3 3 3 3 3 3 67666000 3863700 63802000 15802 1387 14499 81471;81472;81473 98522;98523;98524;98525;98526 98526 1864 5 RECPSDECGAGVFMASHFDR Unmodified 2326.9518 0.95176931 1387 P62979 RPS27A Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a yes yes 0 0 0 1 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 42.076 42.196 4 6.296E-26 11604 20211116_3442_TMUAki_TMT10x_S_F4 179.41 163.27 2679100 4254500 64501 5496700 5752200 4558300 3135400 2854800 2879300 2663500 3729700 2494900 3974500 316580 5505800 5453000 4663300 3309200 2982800 2970600 2609200 3571600 6 6 4 6 6 6 6 6 6 6 6 1816500 2876100 58322 3871200 5014400 3859200 2419100 1994500 1973200 1756300 2483200 1691700 2687400 246340 3878800 4746100 3890300 2575700 2114800 2045000 1725100 2379600 4 4 3 4 4 4 4 4 4 4 4 862600 1378300 6179.4 1625500 737720 699130 716300 860270 906120 907210 1246500 803170 1287100 70242 1627000 706860 772990 733570 867940 925590 884090 1192000 2 2 1 2 2 2 2 2 2 2 2 1025300000 507210000 518070000 15803 1387 14499 81474;81475;81476;81477 98527;98528;98529;98530;98531;98532 98531 6 REDIVDTMVFKPSDVMLVHFR 2 Oxidation (M) 2565.272 0.27196447 2315 Q8WWM7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7-3;Q8WWM7-7 ATXN2L Ataxin-2-like protein yes no 0 0 2 2 By MS/MS By MS/MS 7 0 2 1 1 58.24 58.865 5 3.061E-10 19415 20211116_3446_TMUAki_TMT10x_S_F7 110.38 95.766 5055800 8618400 179810 7948500 6160300 8209600 6602700 8106300 7953500 7908500 7584900 4708800 8039400 602200 8160000 5928800 8345000 6716100 8241200 8019100 7732000 7328300 2 2 2 2 2 2 2 2 2 2 2 2616000 4252500 105940 3818100 3194400 5245700 3678800 3892300 4122400 4099900 3693400 2436500 3966400 323720 3947100 3081500 5225500 3719900 4032000 4159200 3995700 3576200 1 1 1 1 1 1 1 1 1 1 1 2439800 4365900 73871 4130400 2965900 2963900 2924000 4214000 3831100 3808500 3891500 2272200 4073000 278490 4212900 2847300 3119500 2996200 4209300 3859900 3736300 3752100 1 1 1 1 1 1 1 1 1 1 1 1617800000 809640000 808150000 15804 2315 14500 81478;81479 98533;98534 98534 2669;2670 2 REDLVEEIK Unmodified 1129.5979 0.59790293 637 P12081;P12081-4;P12081-3;P12081-2 HARS Histidine--tRNA ligase, cytoplasmic yes no 0 0 0 1 By MS/MS 2 0 1 1 42.382 42.42 3 0.078303 11146 20211116_3440_TMUAki_TMT10x_S_F2 44.564 16.358 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15805 637 14501 81480 98535 98535 1 REDLVVAPAGITLK Unmodified 1480.8613 0.86132826 640 P12268 IMPDH2 Inosine-5'-monophosphate dehydrogenase 2 yes yes 0 0 0 1 By MS/MS By MS/MS 6 0.707 1 2 1 3 1 55.704 55.974 3 4.4119E-07 15902 20211116_3434_TMUAki_TMT10x_P_F6 102.39 71.161 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15806 640 14502 81481;81482;81483;81484 98536;98537;98538;98539 98537 4 REEEEDFIR Unmodified 1221.5626 0.56258006 2404 Q96A65 EXOC4 Exocyst complex component 4 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 32.843 32.854 3 8.8659E-06 7107 20211116_3428_TMUAki_TMT10x_P_F1 140.78 119.32 275350 404790 5739.5 500490 269370 224220 282720 306110 359820 288750 368050 256420 378070 28094 499690 258970 247300 288460 306580 362970 282720 354790 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 275350 404790 5739.5 500490 269370 224220 282720 306110 359820 288750 368050 256420 378070 28094 499690 258970 247300 288460 306580 362970 282720 354790 1 1 1 1 1 1 1 1 1 1 1 30351000 0 30351000 15807 2404 14503 81485;81486 98540;98541 98540 2 REEEEFNTGPLSVLTQSVK Unmodified 2162.0855 0.085527128 1354 P62316;P62316-2 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes no 0 0 0 1 By MS/MS By MS/MS 4 1.07 3 2 1 1 4 3 68.286 68.151 3 6.0912E-41 21225 20211116_3445_TMUAki_TMT10x_S_F6 209.23 190.2 29238000 50981000 231470 48020000 32105000 44097000 38085000 30277000 29739000 33011000 38466000 27225000 47559000 2650600 49139000 30946000 44855000 38060000 31563000 30929000 32127000 36837000 13 13 10 13 13 13 13 13 13 13 13 13409000 22603000 29812 21067000 13409000 26211000 17824000 13282000 13274000 14721000 16424000 12485000 21085000 1113100 21677000 12969000 26094000 17708000 14200000 13815000 14318000 15746000 5 5 3 5 5 5 5 5 5 5 5 15829000 28378000 201660 26953000 18695000 17886000 20261000 16996000 16464000 18290000 22042000 14740000 26474000 1537500 27461000 17977000 18761000 20352000 17364000 17114000 17809000 21090000 8 8 7 8 8 8 8 8 8 8 8 4371600000 2371400000 2000200000 15808 1354 14504 81487;81488;81489;81490;81491;81492;81493 98542;98543;98544;98545;98546;98547;98548;98549;98550;98551;98552;98553;98554;98555 98555 14 REEFVSIK Unmodified 1006.5447 0.54474515 229 O43663;O43663-2;O43663-3;O43663-4 PRC1 Protein regulator of cytokinesis 1 yes no 0 0 0 1 By MS/MS 5 0 1 1 38.278 38.424 3 0.10539 8904 20211116_3444_TMUAki_TMT10x_S_F5 38.55 18.788 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15809 229 14505 81494 98556 98556 1 REELAPYPK Unmodified 1101.5819 0.58185893 291 O60828;O60828-5;O60828-2;O60828-3 PQBP1 Polyglutamine-binding protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 34.348 34.413 3 0.00074044 8564 20211116_3433_TMUAki_TMT10x_P_F5 99.788 83.564 872540 1415800 16289 1542500 2144800 1485700 1151100 1078400 1179500 871740 1354200 812540 1321500 105340 1563800 2032500 1507900 1220500 1110800 1204900 859900 1300900 2 2 2 2 2 2 2 2 2 2 2 562140 892110 10793 1029000 1804500 1229900 815760 723430 762010 561490 889070 523490 832950 74064 1043100 1706000 1229200 877500 756250 782080 555050 853720 1 1 1 1 1 1 1 1 1 1 1 310400 523640 5495.2 513500 340300 255800 335350 354970 417530 310250 465100 289060 488570 31275 520710 326510 278720 342970 354570 422860 304850 447190 1 1 1 1 1 1 1 1 1 1 1 86659000 56360000 30300000 15810 291 14506 81495;81496 98557;98558 98557 2 REELFIVSK Unmodified 1119.6288 0.62880913 680 P15121 AKR1B1 Aldose reductase yes yes 0 0 0 1 By MS/MS By MS/MS 5.22 1.31 1 2 2 2 2 5 4 47.865 48.07 3 0.00011982 12622 20211116_3434_TMUAki_TMT10x_P_F6 134.3 85.664 32442000 46228000 245100 55505000 48028000 44570000 32687000 39424000 34828000 35091000 42270000 30209000 43170000 3124200 55806000 45680000 45963000 34025000 40213000 35602000 34450000 40546000 8 8 7 8 8 8 8 8 8 8 8 14851000 20664000 205820 24220000 32333000 30035000 16468000 16742000 15129000 15029000 18433000 13829000 19295000 1667900 24544000 30616000 29940000 17492000 17642000 15567000 14748000 17679000 4 4 4 4 4 4 4 4 4 4 4 17591000 25564000 39283 31285000 15695000 14535000 16220000 22682000 19699000 20062000 23837000 16380000 23876000 1456400 31262000 15064000 16024000 16533000 22572000 20035000 19702000 22867000 4 4 3 4 4 4 4 4 4 4 4 4094000000 2317800000 1776200000 15811 680 14507 81497;81498;81499;81500;81501;81502;81503;81504;81505 98559;98560;98561;98562;98563;98564;98565;98566;98567;98568;98569 98563 11 REELITNWEQIR Unmodified 1585.8213 0.82125436 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 3 3 4 2 51.338 51.485 3 1.4233E-18 14918 20211116_3431_TMUAki_TMT10x_P_F4 195.1 149.83 4970900 9079000 104900 9162300 5490200 5054600 4197100 8525200 7314000 7446200 8305000 4629200 8472000 517150 9279700 5238100 5480700 4421400 8460400 7339500 7316800 7980900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4970900 9079000 104900 9162300 5490200 5054600 4197100 8525200 7314000 7446200 8305000 4629200 8472000 517150 9279700 5238100 5480700 4421400 8460400 7339500 7316800 7980900 2 2 2 2 2 2 2 2 2 2 2 743440000 0 743440000 15812 1663 14508 81506;81507;81508;81509;81510;81511 98570;98571;98572;98573;98574;98575 98570 6 REFEVYGPIKR Unmodified 1392.7514 0.75138388 560 P08621;P08621-2;P08621-3 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 0 0 0 2 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 38.079 38.463 4 4.0305E-11 9365 20211116_3436_TMUAki_TMT10x_P_F8 168.83 143.98 778000 1300000 19506 1220300 1950200 1823600 1100700 1508500 1536800 1213100 1352100 724540 1212700 99098 1259600 1849800 1813400 1174400 1540800 1537800 1197000 1310100 3 3 3 3 3 3 3 3 3 3 3 517390 849620 14584 780060 1642300 1568500 814020 993030 1026200 816350 873590 481850 792520 72242 812490 1554800 1536300 875570 1033400 1029200 804570 847440 2 2 2 2 2 2 2 2 2 2 2 260610 450340 4922 440240 307900 255070 286720 515430 510650 396760 478530 242690 420180 26856 447070 294990 277120 298870 507360 508560 392390 462620 1 1 1 1 1 1 1 1 1 1 1 137940000 87826000 50109000 15813 560 14509 81512;81513;81514 98576;98577;98578 98577 3 REFPTVPLVK Unmodified 1184.6917 0.69174374 1868 Q16851;Q16851-2 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 0 0 0 1 By MS/MS 1 0 1 1 50.378 50.378 3 0.034815 14174 20211116_3428_TMUAki_TMT10x_P_F1 56.225 15.636 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15814 1868 14510 81515 98579 98579 1 REFQLDLDEIENDNGTVR Unmodified 2162.024 0.023989504 1672 Q14008;Q14008-2;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 60.948 60.948 3 4.5378E-31 18503 20211116_3428_TMUAki_TMT10x_P_F1 183.88 159.89 2612100 4192100 15187 3991300 3036500 5481800 2616800 3206900 3337700 4169000 2853700 2432200 3911000 236660 4108200 2901900 5441400 2698600 3404200 3346800 4032000 2767900 1 1 1 1 1 1 1 1 1 1 1 2612100 4192100 15187 3991300 3036500 5481800 2616800 3206900 3337700 4169000 2853700 2432200 3911000 236660 4108200 2901900 5441400 2698600 3404200 3346800 4032000 2767900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 917880000 917880000 0 15815 1672 14511 81516;81517 98580;98581 98580 2 REGGDFVCCALSPR Unmodified 1622.7293 0.72934458 1881 Q2TAY7;Q2TAY7-2 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes no 0 0 0 1 By MS/MS 6 0 2 2 39.807 39.971 3 9.2402E-11 9789 20211116_3445_TMUAki_TMT10x_S_F6 124.78 115.58 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15816 1881 14512 81518;81519 98582;98583 98582 2 REGPPFISEAAVR Unmodified 1427.7521 0.75211216 2686 Q9BV81 EMC6 ER membrane protein complex subunit 6 yes yes 0 0 0 1 By MS/MS 5.5 0.5 1 1 2 37.533 37.696 3 0.00014897 9260 20211116_3444_TMUAki_TMT10x_S_F5 83.823 64.725 99521 166610 1233.9 218160 109280 89619 90181 100110 100740 97551 147580 92673 155660 9537.6 216990 104380 99462 92800 101180 103680 95379 140910 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 99521 166610 1233.9 218160 109280 89619 90181 100110 100740 97551 147580 92673 155660 9537.6 216990 104380 99462 92800 101180 103680 95379 140910 1 1 1 1 1 1 1 1 1 1 1 10194000 0 10194000 15817 2686 14513 81520;81521 98584;98585 98584 2 REPFFHGQDNYDQLVR Unmodified 2019.9551 0.95512208 736 P19784 CSNK2A2 Casein kinase II subunit alpha' yes yes 0 0 0 1 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 43.328 43.462 4 2.0693E-12 11174 20211116_3445_TMUAki_TMT10x_S_F6 140.8 125.56 3802500 6647200 41377 7132800 7649700 6927700 4322700 5521400 5723100 4634200 5714600 3540600 6204300 373930 7239200 7251500 7038500 4602000 5658200 5760700 4562600 5512900 4 4 2 4 4 4 4 4 4 4 4 2297000 3774400 21437 4327900 6146000 5573300 3027300 3249500 3423200 2559800 3312200 2138800 3524000 251120 4394700 5815100 5548700 3246100 3400500 3461200 2528400 3198600 2 2 1 2 2 2 2 2 2 2 2 1505500 2872700 19940 2804800 1503700 1354400 1295300 2272000 2299900 2074500 2402500 1401800 2680300 122820 2844500 1436500 1489900 1355900 2257800 2299400 2034200 2314400 2 2 1 2 2 2 2 2 2 2 2 618280000 184230000 434050000 15818 736 14514 81522;81523;81524 98586;98587;98588;98589 98589 4 REPFLLSGGDDGALK Unmodified 1573.81 0.81002097 2624 Q9BQ67 GRWD1 Glutamate-rich WD repeat-containing protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 53.472 53.663 3 1.9949E-20 15850 20211116_3431_TMUAki_TMT10x_P_F4 155.2 134.25 10498000 16943000 298430 17613000 14826000 17452000 11867000 13433000 13710000 12033000 14428000 9776900 15812000 1209100 17919000 14160000 17699000 12249000 13819000 13892000 11810000 13896000 3 3 3 3 3 3 3 3 3 3 3 6524900 10282000 230060 10679000 11263000 14258000 8627400 8581600 8590600 7455000 9255700 6077100 9595800 821730 10920000 10747000 14177000 8887800 8978000 8764700 7327300 8908100 2 2 2 2 2 2 2 2 2 2 2 3973100 6660400 68367 6933800 3563200 3193900 3239800 4851200 5119000 4578100 5171800 3699900 6215900 387370 6998400 3412600 3521700 3361400 4840600 5127400 4482500 4987400 1 1 1 1 1 1 1 1 1 1 1 728090000 376760000 351320000 15819 2624 14515 81525;81526;81527 98590;98591;98592;98593 98590 4 REPHPAEAEK Unmodified 1162.5731 0.57308516 3065 Q9P2K5;Q9P2K5-2;Q9P2K5-4 MYEF2 Myelin expression factor 2 yes no 0 0 0 1 By MS/MS 3 0 1 1 25.322 25.022 3 0.0015715 7132 20211116_3441_TMUAki_TMT10x_S_F3 73.466 38.579 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15820 3065 14516 81528 98594 98594 1 REPLSLINVR Unmodified 1195.7037 0.70370541 2489 Q96HS1;Q96HS1-2 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 3.33 3.3 2 1 1 2 43.783 43.717 3 1.1687E-09 13504 20211116_3439_TMUAki_TMT10x_S_F1 181.31 135.66 3012000 4836800 633.78 5338900 4246200 4378400 3277900 3939100 4063000 3473100 4214700 2804500 4515100 264680 5396800 4046900 4509800 3399900 4013300 4104500 3411200 4061100 3 3 1 3 3 3 3 3 3 3 3 1300800 2100500 0 2484700 2718100 2915700 1702400 1750300 1858400 1574500 1899500 1211200 1961400 125390 2514100 2580600 2917500 1784800 1833200 1885200 1545000 1831100 1 1 0 1 1 1 1 1 1 1 1 1711200 2736300 633.78 2854200 1528000 1462700 1575600 2188800 2204700 1898600 2315200 1593300 2553700 139300 2882600 1466400 1592200 1615100 2180100 2219300 1866200 2229900 2 2 1 2 2 2 2 2 2 2 2 254750000 116380000 138370000 15821 2489 14517 81529;81530;81531 98595;98596;98597 98596 3 REPPPYGYR Unmodified 1133.5618 0.56179219 1649 Q13573 SNW1 SNW domain-containing protein 1 yes yes 0 0 0 1 By MS/MS 5 0 1 1 28.699 28.629 3 1.1481E-05 6150 20211116_3433_TMUAki_TMT10x_P_F5 109.79 83.851 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15822 1649 14518 81532 98598 98598 1 REPWLLPSQHNDIIR Unmodified 1872.9959 0.99586468 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 1 By matching By MS/MS 4 2.83 2 1 1 2 46.556 46.416 4 6.9494E-06 12809 20211116_3440_TMUAki_TMT10x_S_F2 101.04 86.436 1640800 2905500 17357 2923500 1529100 1582100 1456900 2729000 2587700 2291500 2554600 1527900 2711200 150650 2961200 1465400 1720200 1516600 2703700 2581900 2256000 2465300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1640800 2905500 17357 2923500 1529100 1582100 1456900 2729000 2587700 2291500 2554600 1527900 2711200 150650 2961200 1465400 1720200 1516600 2703700 2581900 2256000 2465300 2 2 2 2 2 2 2 2 2 2 2 397950000 158400000 239550000 15823 1730 14519 81533;81534;81535 98599;98600 98599 2 RERDEENQEMSSCK Carbamidomethyl (C);Oxidation (M) 1869.7581 0.75813811 302 O60934 NBN Nibrin yes yes 0 1 1 2 By MS/MS 1 0 1 1 50.266 50.266 2 0.059694 14128 20211116_3428_TMUAki_TMT10x_P_F1 41.704 24.931 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15824 302 14520 81536 98601 98601 4 231 1 RESVASGDDRAEEDMDEAIEK Oxidation (M) 2367.0132 0.013226401 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 1 2 By MS/MS By MS/MS 1 0 2 1 1 32.393 32.409 4 4.7173E-20 6948 20211116_3428_TMUAki_TMT10x_P_F1 158.52 144.26 237730 332060 6040.2 634880 444870 244960 203980 113120 204590 116280 282290 221400 310980 28240 620460 420870 270640 219520 121760 210870 113440 269910 2 2 2 2 2 2 2 2 2 2 2 138650 189900 4305.1 369620 392230 196500 149840 59304 103400 49505 161650 129130 177870 19059 361790 370250 207770 163220 66926 109290 48753 154130 1 1 1 1 1 1 1 1 1 1 1 99079 142160 1735.1 265260 52642 48468 54141 53817 101200 66777 120640 92266 133110 9181 258670 50618 62868 56296 54835 101580 64684 115770 1 1 1 1 1 1 1 1 1 1 1 57436000 40006000 17430000 15825 1057 14521 81537;81538 98602;98603 98602 1376 2 RESVASGDDRAEEDMDEAIEK Unmodified 2351.0183 0.018311779 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 2 By MS/MS By MS/MS 1 0 2 1 1 41.328 41.247 4 5.1981E-15 10483 20211116_3428_TMUAki_TMT10x_P_F1 140.47 120.39 942280 1418100 11706 2465500 1804600 1174000 1007600 789890 862440 691850 1279000 877430 1327100 99915 2421900 1711000 1267000 1059300 819550 898520 679740 1220900 2 2 1 2 2 2 2 2 2 2 2 639170 952770 11706 1709800 1656700 1060000 882180 513960 558870 421840 867370 595220 891870 78152 1681100 1569800 1107700 925320 547360 593650 415780 827170 1 1 1 1 1 1 1 1 1 1 1 303110 465320 0 755680 147920 113910 125450 275920 303570 270010 411660 282210 435280 21763 740810 141190 159270 133940 272190 304870 263950 393770 1 1 0 1 1 1 1 1 1 1 1 226930000 163030000 63901000 15826 1057 14521 81539;81540 98604;98605 98604 2 REVDDLGPEVGDIK Unmodified 1540.7733 0.77330111 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 0 1 By MS/MS 3 0 1 1 48.286 47.933 3 1.2688E-06 16286 20211116_3441_TMUAki_TMT10x_S_F3 94.454 64.396 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15827 196 14522 81541 98606 98606 1 REYYFAITMER Oxidation (M) 1493.6973 0.6972994 3069 Q9P2R7;Q9P2R7-2 SUCLA2 Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial yes no 0 0 1 1 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 43.97 44.377 3 6.2384E-06 11477 20211116_3445_TMUAki_TMT10x_S_F6 113.24 98.364 4162100 6911900 36168 7105700 5367100 5190400 4377200 6672200 6346600 5647900 6469800 3875600 6450300 263850 7206700 5123500 5439000 4552700 6678400 6374800 5558200 6237400 4 4 3 4 4 4 4 4 4 4 4 1034500 1575700 11789 1752600 2018900 2308200 1355400 1625600 1537800 1419500 1478200 963280 1470900 110540 1783800 1919800 2301900 1415100 1681100 1554400 1394900 1427800 1 1 1 1 1 1 1 1 1 1 1 3127600 5336300 24379 5353000 3348200 2882100 3021800 5046700 4808800 4228300 4991600 2912300 4979400 153310 5422900 3203700 3137200 3137500 4997400 4820400 4163300 4809600 3 3 2 3 3 3 3 3 3 3 3 515790000 193430000 322360000 15828 3069 14523 81542;81543;81544 98607;98608;98609;98610 98608 3118 4 RFASGGCDNLIK Unmodified 1336.6558 0.65576893 1244 P55735;P55735-2;P55735-4;P55735-3 SEC13 Protein SEC13 homolog yes no 0 0 0 1 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 37.746 38.033 3 6.2154E-09 10469 20211116_3435_TMUAki_TMT10x_P_F7 146.43 85.031 1434400 2143500 29103 3087800 3598200 2160500 1615700 1160400 1366100 1035900 1867500 1335800 2003600 176350 3069500 3402000 2235700 1734800 1226600 1418500 1016800 1785900 4 4 4 4 4 4 4 4 4 4 4 1056500 1582700 25369 2231400 3332700 1933300 1294000 899470 1020400 786190 1407600 983880 1479200 143110 2226100 3145800 1964700 1410700 963300 1063800 772500 1345900 3 3 3 3 3 3 3 3 3 3 3 377880 560800 3733.1 856430 265530 227210 321690 260980 345780 249670 459870 351870 524390 33235 843410 256240 271040 324110 263300 354760 244310 440090 1 1 1 1 1 1 1 1 1 1 1 156000000 108210000 47797000 15829 1244 14524 81545;81546;81547;81548 98611;98612;98613;98614 98612 4 RFDAMPFTLR Oxidation (M) 1268.6336 0.63357693 3217 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 1 1 By MS/MS By MS/MS 3.5 2.69 2 2 2 2 4 4 46.46 46.352 3 2.8464E-05 14113 20211116_3429_TMUAki_TMT10x_P_F2 127.83 88.206 5285400 9145400 130670 8646500 8554400 10467000 6257800 10825000 10940000 8166900 8810600 4922100 8531700 593800 8883300 8151800 10559000 6612600 10909000 10849000 8085700 8565200 8 8 6 8 8 8 8 8 8 8 8 2624800 4497900 25893 4162000 5799000 7965800 3808600 5406800 5272200 3955900 4217600 2444100 4195800 274250 4326500 5511100 7822900 4012600 5583000 5262100 3923300 4101200 4 4 2 4 4 4 4 4 4 4 4 2660600 4647400 104770 4484500 2755400 2501600 2449200 5418300 5668100 4211000 4593100 2478100 4335900 319550 4556800 2640700 2736300 2600000 5325600 5587300 4162500 4464000 4 4 4 4 4 4 4 4 4 4 4 2792700000 1769000000 1023700000 15830 3217 14525 81549;81550;81551;81552;81553;81554;81555;81556 98615;98616;98617;98618;98619;98620;98621;98622 98615 3200 8 RFDAMPFTLR Unmodified 1252.6387 0.63866231 3217 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 0 1 By MS/MS 3.5 0.5 1 1 2 55.642 55.446 3 4.7225E-09 16551 20211116_3431_TMUAki_TMT10x_P_F4 130.16 105.93 1163700 1596600 9542.5 1773400 1580900 1852400 1419000 823170 695660 784340 1433800 1083500 1490400 111210 1797800 1512400 1859100 1425500 887720 765560 767620 1360300 1 1 1 1 1 1 1 1 1 1 1 1163700 1596600 9542.5 1773400 1580900 1852400 1419000 823170 695660 784340 1433800 1083500 1490400 111210 1797800 1512400 1859100 1425500 887720 765560 767620 1360300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 412940000 412940000 0 15831 3217 14525 81557;81558 98623;98624 98624 2 RFDAQTGADREVQR Unmodified 1647.8077 0.80772956 1032 P43686;P43686-2 PSMC4 26S protease regulatory subunit 6B yes no 0 0 0 2 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 26.402 26.265 3;4 1.0729E-29 8162 20211116_3441_TMUAki_TMT10x_S_F3 212.7 151.29 239360 384050 926.82 377050 337500 332890 251270 202460 234490 209220 309580 222860 358330 20039 384490 321360 338920 258860 212630 241960 204050 296310 4 4 1 4 4 4 4 4 4 4 4 123250 184640 926.82 181450 197100 224540 114650 114480 121320 109860 150100 114750 172270 11179 185980 186910 223620 120810 121810 124160 107490 143910 2 2 1 2 2 2 2 2 2 2 2 116120 199410 0 195600 140390 108350 136620 87980 113170 99354 159480 108110 186060 8860.4 198510 134450 115300 138050 90820 117800 96565 152410 2 2 0 2 2 2 2 2 2 2 2 40719000 17966000 22753000 15832 1032 14526 81559;81560;81561;81562;81563 98625;98626;98627;98628 98627 4 RFDDAVVQSDMK Oxidation (M) 1425.6558 0.65582851 615 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 1 1 By MS/MS By MS/MS 4.09 1.83 1 1 2 3 2 1 1 6 5 36.894 36.872 3 6.6912E-05 9505 20211116_3433_TMUAki_TMT10x_P_F5 96.533 71.68 8801900 13505000 89930 17281000 18912000 13166000 9921200 8259500 9091200 7128600 11962000 8195800 12616000 914720 17301000 17911000 13557000 10508000 8611500 9386900 7008700 11450000 11 11 4 11 11 11 11 11 11 11 11 5369000 8113800 70814 10418000 15760000 10623000 6483100 5209300 5758500 4286700 7343000 4999500 7579700 640700 10468000 14881000 10688000 7038700 5542100 5946300 4224600 7034500 7 7 3 7 7 7 7 7 7 7 7 3432900 5391400 19116 6863000 3152700 2543200 3438100 3050200 3332700 2841900 4618600 3196300 5036200 274020 6832800 3029700 2868700 3469200 3069400 3440700 2784100 4415600 4 4 1 4 4 4 4 4 4 4 4 2588400000 2040900000 547480000 15833 615 14527 81564;81565;81566;81567;81568;81569;81570;81571;81572;81573;81574 98629;98630;98631;98632;98633;98634;98635;98636;98637;98638;98639;98640;98641;98642 98635 622 14 RFDDAVVQSDMK Unmodified 1409.6609 0.66091389 615 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 1 By MS/MS By MS/MS 3.9 1.58 1 1 2 2 2 2 6 4 42.593 42.65 3 1.4552E-18 11452 20211116_3431_TMUAki_TMT10x_P_F4 218.6 177.88 21055000 30112000 107390 50452000 39477000 22711000 21646000 14179000 13901000 13198000 26933000 19605000 28173000 2087700 49618000 37410000 24655000 22649000 14817000 14944000 12930000 25578000 9 9 6 9 9 9 9 9 9 9 9 9577800 13168000 25706 21670000 31022000 16152000 12660000 6542900 6833200 6184100 11269000 8917900 12319000 1107100 21424000 29285000 16579000 13621000 7126500 7364000 6054500 10734000 4 4 2 4 4 4 4 4 4 4 4 11477000 16944000 81683 28782000 8454900 6558700 8985900 7635900 7068300 7013500 15663000 10687000 15855000 980540 28194000 8125000 8076600 9027700 7690600 7579600 6875400 14844000 5 5 4 5 5 5 5 5 5 5 5 5197500000 3752800000 1444700000 15834 615 14527 81575;81576;81577;81578;81579;81580;81581;81582;81583;81584 98643;98644;98645;98646;98647;98648;98649;98650;98651;98652;98653 98646 11 RFDDPGLMLMGFKPLVLLK 2 Oxidation (M) 2221.2003 0.20030307 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 2 2 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 77.297 77.29 4 2.2812E-07 25615 20211116_3431_TMUAki_TMT10x_P_F4 101.67 80.07 13521000 22107000 34654 19529000 16668000 20640000 17314000 19394000 19184000 20226000 18836000 12588000 20618000 964170 20121000 15985000 20930000 17586000 19806000 19423000 19720000 18181000 3 3 1 3 3 3 3 3 3 3 3 4203100 7118500 0 6269500 4248100 9748800 5809600 5551100 5436900 5912500 5494100 3913500 6639200 348690 6507900 4112500 9622500 5799700 5866600 5549500 5759600 5298200 1 1 0 1 1 1 1 1 1 1 1 9317800 14988000 34654 13259000 12420000 10891000 11504000 13843000 13747000 14314000 13341000 8674200 13979000 615480 13614000 11872000 11308000 11786000 13939000 13873000 13960000 12883000 2 2 1 2 2 2 2 2 2 2 2 5519400000 2019500000 3499900000 15835 647 14528 81585;81586;81587 98654;98655;98656 98654 689;690 3 RFDDPGLMLMGFKPLVLLK Oxidation (M) 2205.2054 0.20538845 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 1 2 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 78.691 78.688 4 2.0596E-06 25173 20211116_3434_TMUAki_TMT10x_P_F6 95.814 80.222 17524000 28136000 254630 27217000 21694000 19958000 20818000 9820900 8760100 12216000 18104000 16318000 26250000 1713400 27722000 20793000 20552000 20789000 10568000 9771200 11832000 17175000 3 3 2 3 3 3 3 3 3 3 3 5685800 8318100 0 8237700 5426700 8626900 6244800 3355500 2620900 3850300 5542200 5293800 7761400 432610 8415300 5221600 8646100 6179400 3692500 2928600 3740000 5255900 1 1 0 1 1 1 1 1 1 1 1 11838000 19818000 254630 18980000 16268000 11331000 14574000 6465400 6139200 8365900 12562000 11024000 18489000 1280800 19307000 15571000 11906000 14610000 6876000 6842600 8092300 11919000 2 2 2 2 2 2 2 2 2 2 2 2725900000 1398400000 1327500000 15836 647 14528 81588;81589;81590;81591 98657;98658;98659 98657 689;690 3 RFDEILEASDGIMVAR Unmodified 1820.9091 0.90908309 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 1 By MS/MS By MS/MS 4.11 1.49 1 2 3 4 4 4 10 8 69.235 69.124 2;3 3.9046E-104 21679 20211116_3445_TMUAki_TMT10x_S_F6 334.72 277.38 82205000 135580000 1604000 129550000 91491000 108810000 96875000 66070000 56617000 72582000 94181000 76550000 126490000 8120100 132280000 87937000 111160000 96736000 69527000 60693000 70619000 89690000 23 23 14 23 23 23 23 23 23 23 23 40982000 67790000 506130 63981000 42110000 71488000 50936000 34384000 29847000 36626000 47441000 38160000 63241000 3605400 65653000 40611000 71530000 50552000 36899000 31912000 35678000 45220000 13 13 7 13 13 13 13 13 13 13 13 41223000 67790000 1097900 65566000 49381000 37320000 45938000 31686000 26770000 35956000 46740000 38390000 63247000 4514600 66623000 47326000 39635000 46184000 32628000 28781000 34941000 44470000 10 10 7 10 10 10 10 10 10 10 10 29723000000 15895000000 13828000000 15837 670;671 14529 81592;81593;81594;81595;81596;81597;81598;81599;81600;81601;81602;81603;81604;81605;81606;81607;81608;81609 98660;98661;98662;98663;98664;98665;98666;98667;98668;98669;98670;98671;98672;98673;98674;98675;98676;98677;98678;98679;98680;98681;98682;98683;98684;98685 98685 26 RFDEILEASDGIMVAR Oxidation (M) 1836.904 0.90399771 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 1 1 By MS/MS By MS/MS 4.18 1.4 1 2 4 4 7 4 12 10 61.974 61.893 2;3 7.5319E-43 19694 20211116_3442_TMUAki_TMT10x_S_F4 229.68 189.09 113380000 199720000 1665900 186790000 149460000 215060000 145620000 173230000 160070000 161090000 163960000 105580000 186310000 9862000 191900000 143280000 216410000 148360000 177870000 162350000 157830000 158050000 31 31 18 31 31 31 31 31 31 31 31 66200000 108750000 1169300 106300000 85371000 154100000 88945000 96294000 88437000 89178000 92221000 61644000 101460000 6416600 109330000 81990000 152740000 90019000 100610000 90126000 87389000 88845000 19 19 12 19 19 19 19 19 19 19 19 47179000 90972000 496590 80496000 64092000 60957000 56677000 76934000 71636000 71915000 71741000 43931000 84848000 3445500 82567000 61286000 63663000 58341000 77265000 72226000 70443000 69202000 12 12 6 12 12 12 12 12 12 12 12 66523000000 34441000000 32082000000 15838 670;671 14529 81610;81611;81612;81613;81614;81615;81616;81617;81618;81619;81620;81621;81622;81623;81624;81625;81626;81627;81628;81629;81630;81631 98686;98687;98688;98689;98690;98691;98692;98693;98694;98695;98696;98697;98698;98699;98700;98701;98702;98703;98704;98705;98706;98707;98708;98709;98710;98711;98712;98713;98714;98715;98716;98717;98718;98719;98720 98714 740 35 RFDGVQDPR Unmodified 1088.5363 0.53630573 77 O00264;O00264-2 PGRMC1 Membrane-associated progesterone receptor component 1 yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 30.351 30.337 3 0.00057369 6502 20211116_3431_TMUAki_TMT10x_P_F4 105.4 67.31 1129900 1778300 12453 1637300 1968300 2001100 1251900 1053300 1119800 1016400 1562800 1052100 1658800 117020 1685700 1870000 1994900 1303300 1117700 1160700 994190 1493800 3 3 3 3 3 3 3 3 3 3 3 1129900 1778300 12453 1637300 1968300 2001100 1251900 1053300 1119800 1016400 1562800 1052100 1658800 117020 1685700 1870000 1994900 1303300 1117700 1160700 994190 1493800 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 56191000 56191000 0 15839 77 14530 81632;81633 98721;98722;98723 98721 3 RFDVSGYPTLK Unmodified 1281.6717 0.67173657 654 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 1 By MS/MS By MS/MS 4.14 3.09 2 2 1 2 4 3 50.053 50.05 3 1.3717E-14 15561 20211116_3429_TMUAki_TMT10x_P_F2 186.58 139.32 35170000 51103000 243290 63100000 87946000 77262000 42822000 61664000 64844000 48011000 54114000 32748000 47730000 3807800 63737000 83202000 77485000 46477000 63074000 64623000 47452000 52534000 6 6 3 6 6 6 6 6 6 6 6 24327000 34000000 63129 42007000 79103000 69003000 35193000 45377000 48221000 34600000 37878000 22650000 31756000 2778500 42692000 74743000 68100000 38397000 47006000 48119000 34236000 36859000 3 3 2 3 3 3 3 3 3 3 3 10844000 17103000 180160 21094000 8843300 8259000 7628600 16287000 16623000 13411000 16236000 10098000 15974000 1029300 21045000 8459100 9385800 8080000 16069000 16504000 13216000 15675000 3 3 1 3 3 3 3 3 3 3 3 4067200000 2671500000 1395700000 15840 654 14531 81634;81635;81636;81637;81638;81639;81640 98724;98725;98726;98727;98728;98729 98725 6 RFEELGVK Unmodified 976.53418 0.53418046 1513 Q04760;Q04760-2 GLO1 Lactoylglutathione lyase yes no 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 39.273 39.358 3 0.00061955 9389 20211116_3444_TMUAki_TMT10x_S_F5 128.28 85.198 3986800 6090700 57286 7092100 9263700 7251900 4755300 5098500 5214800 4822600 5632800 3712500 5687000 457510 7166800 8772600 7329500 5073500 5284300 5299900 4721300 5420800 4 4 3 4 4 4 4 4 4 4 4 2556400 3808100 30741 4485000 7824100 6159600 3349700 3211700 3316100 3080100 3537200 2380500 3555900 314370 4552700 7391500 6105500 3630600 3410200 3382900 3013600 3405400 2 2 2 2 2 2 2 2 2 2 2 1430400 2282600 26545 2607100 1439600 1092300 1405600 1886900 1898700 1742400 2095600 1332000 2131100 143130 2614100 1381100 1224000 1442800 1874000 1917000 1707700 2015500 2 2 1 2 2 2 2 2 2 2 2 360270000 172580000 187690000 15841 1513 14532 81641;81642;81643;81644 98730;98731;98732;98733 98732 4 RFEETGQELAELLEEEK Unmodified 2048.9902 0.99022976 947 P36405 ARL3 ADP-ribosylation factor-like protein 3 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 3 2 1 76.768 76.747 3;4 3.3507E-29 26906 20211116_3439_TMUAki_TMT10x_S_F1 185.25 169.3 16683000 25812000 52294 29176000 15204000 16724000 17437000 9347900 9582800 10284000 17527000 15533000 24098000 1276700 29340000 14629000 17639000 17327000 9904600 10374000 10006000 16661000 3 3 1 3 3 3 3 3 3 3 3 8184000 12346000 52294 14564000 6582800 10497000 7384900 4826900 5084600 5307300 8386100 7620400 11529000 693260 14641000 6334500 10817000 7377700 5208200 5390600 5163600 7987600 2 2 1 2 2 2 2 2 2 2 2 8499000 13466000 0 14612000 8621100 6226600 10052000 4521000 4498200 4977200 9140500 7912500 12569000 583480 14700000 8294300 6822100 9949700 4696400 4983900 4842200 8673800 1 1 0 1 1 1 1 1 1 1 1 3039400000 1903400000 1136100000 15842 947 14533 81645;81646;81647 98734;98735;98736 98736 3 RFEIACYK Unmodified 1085.5328 0.53280025 3267 Q9Y3A5 SBDS Ribosome maturation protein SBDS yes yes 0 0 0 1 By MS/MS 4.5 3.5 1 1 2 42.987 43.162 3 0.007105 11248 20211116_3428_TMUAki_TMT10x_P_F1 68.371 50.506 738950 1222700 0 1404500 2236800 2185200 1192300 1430000 1279600 1077900 1286500 688030 1141600 81611 1431700 2118400 2161000 1266700 1481500 1298200 1067200 1240800 1 1 0 1 1 1 1 1 1 1 1 738950 1222700 0 1404500 2236800 2185200 1192300 1430000 1279600 1077900 1286500 688030 1141600 81611 1431700 2118400 2161000 1266700 1481500 1298200 1067200 1240800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 48267000 48267000 0 15843 3267 14534 81648;81649 98737;98738 98737 2 RFEIEYQGDPELQPIR Unmodified 1988.9956 0.99558991 3005 Q9NXE4;Q9NXE4-5;Q9NXE4-9;Q9NXE4-10;Q9NXE4-7;Q9NXE4-8;Q9NXE4-3;Q9NXE4-6;Q9NXE4-2;Q9NXE4-4 SMPD4 Sphingomyelin phosphodiesterase 4 yes no 0 0 0 1 By MS/MS 3 0 1 1 55.988 55.595 3 9.3246E-05 19414 20211116_3441_TMUAki_TMT10x_S_F3 81.387 57.782 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15844 3005 14535 81650 98739 98739 1 RFEIINAIYEPTEEECEWKPDEEDEISEELK Unmodified 3868.7513 0.75131121 1240 P55209;P55209-2 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 0 0 0 2 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 77.186 77.143 4;5 1.0617E-11 25313 20211116_3440_TMUAki_TMT10x_S_F2 101.87 96.766 13865000 22652000 227950 23637000 11588000 9856100 15460000 3726400 3621600 4824700 12618000 12911000 21140000 1327100 23838000 11222000 10753000 15113000 4130900 4521600 4666800 11893000 3 3 2 3 3 3 3 3 3 3 3 4224100 7030000 0 6975500 3303900 5383400 5022400 2030300 2183200 2557100 4192200 3933100 6559600 334360 7096200 3211000 5507100 4916700 2249200 2416500 2475700 3981900 1 1 0 1 1 1 1 1 1 1 1 9640700 15622000 227950 16662000 8284300 4472700 10438000 1696100 1438400 2267600 8425400 8978100 14581000 992730 16742000 8011300 5245900 10196000 1881700 2105000 2191100 7911300 2 2 2 2 2 2 2 2 2 2 2 7745900000 4242100000 3503800000 15845 1240 14536 81651;81652;81653;81654 98740;98741;98742 98741 3 RFEKPLEEK Unmodified 1174.6346 0.63462279 2232 Q8NC51;Q8NC51-3;Q8NC51-2;Q8NC51-4 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 0 0 0 2 By MS/MS By MS/MS 5 0 2 1 1 34.758 34.823 4 0.00014392 8696 20211116_3433_TMUAki_TMT10x_P_F5 136.02 105.46 3334700 5128000 60894 5356700 5072500 4922300 3528800 2497600 2834900 2640700 3682200 3105300 4785800 349840 5442100 4828100 4986900 3638700 2666100 2944500 2573200 3525900 3 3 2 3 3 3 3 3 3 3 3 2711900 4115300 32695 4260900 4451200 4399400 2885900 1870600 2157100 2023900 2870000 2525300 3840600 271950 4338600 4230200 4416400 2986500 2034100 2251700 1970300 2746500 2 2 1 2 2 2 2 2 2 2 2 622770 1012700 28199 1095800 621290 522990 642980 627050 677790 616870 812260 580070 945250 77892 1103400 597980 570450 652140 631980 692780 602890 779390 1 1 1 1 1 1 1 1 1 1 1 216600000 145990000 70609000 15846 2232 14537 81655;81656 98743;98744 98743 2 RFELYFQGPSSNKPR Unmodified 1824.9271 0.92711641 913 P33993;P33993-2 MCM7 DNA replication licensing factor MCM7 yes no 0 0 0 2 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 45.88 45.926 4 3.0069E-51 13103 20211116_3442_TMUAki_TMT10x_S_F4 281.92 252.58 30260000 48538000 170350 51619000 46320000 58273000 32569000 35402000 33573000 34335000 37348000 28175000 45303000 2683900 52542000 44065000 58441000 33786000 37116000 34245000 33577000 35911000 9 9 4 9 9 9 9 9 9 9 9 24259000 39327000 135860 40932000 40513000 53787000 27612000 28690000 27312000 28330000 30305000 22587000 36702000 2173100 41837000 38517000 53437000 28673000 30426000 27905000 27684000 29141000 6 6 3 6 6 6 6 6 6 6 6 6001200 9211700 34491 10686000 5806800 4486900 4957300 6711900 6260700 6004400 7043300 5587800 8601000 510810 10705000 5547500 5003300 5113200 6690700 6339900 5893400 6770200 3 3 1 3 3 3 3 3 3 3 3 4613700000 2717700000 1896000000 15847 913 14538 81657;81658;81659;81660;81661;81662 98745;98746;98747;98748;98749;98750;98751;98752;98753 98752 9 RFETANLDIPPANASR Unmodified 1770.9013 0.90129559 2949 Q9NTZ6 RBM12 RNA-binding protein 12 yes yes 0 0 0 1 By MS/MS 6 0 1 1 43.178 43.343 3 0.0047755 11102 20211116_3445_TMUAki_TMT10x_S_F6 61.477 49.501 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15848 2949 14539 81663 98754 98754 1 RFFMGNQVLK Oxidation (M) 1254.6543 0.65431237 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 1 1 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 43.64 43.756 3 0.0053697 11868 20211116_3431_TMUAki_TMT10x_P_F4 62.869 31.641 9060300 15846000 74940 14482000 16521000 17181000 11521000 17042000 17412000 13307000 14271000 8436500 14781000 910050 14911000 15719000 17333000 12130000 17223000 17344000 13150000 13864000 4 4 3 4 4 4 4 4 4 4 4 5580800 9674700 71979 8720300 12299000 14228000 8394400 9350900 9689900 7563900 8507400 5196800 9024000 623860 9045900 11699000 14046000 8759000 9700100 9759200 7461000 8243400 2 2 2 2 2 2 2 2 2 2 2 3479500 6171500 2960.6 5761700 4221800 2952600 3127100 7691200 7721600 5742600 5764000 3239700 5757200 286190 5864800 4019700 3287600 3371400 7522400 7584800 5688800 5620900 2 2 1 2 2 2 2 2 2 2 2 673440000 493450000 179990000 15849 648 14540 81664;81665;81666 98755;98756;98757 98755 697 3 RFGFPEGSVELYAEK Unmodified 1727.8519 0.85188578 783 P23396 RPS3 40S ribosomal protein S3 yes yes 0 0 0 1 By MS/MS By MS/MS 6.8 1.28 1 2 2 4 6 5 10 52.69 52.917 3 3.9529E-19 30880 20211116_3446_TMUAki_TMT10x_S_F7 160.81 137.43 69853000 109330000 841010 122100000 76239000 94797000 78712000 54434000 50394000 56453000 75570000 65045000 102060000 6500200 123250000 73204000 97350000 78835000 57442000 53400000 55052000 72120000 23 23 15 23 23 23 23 23 23 23 23 46064000 68150000 501900 77876000 48747000 74256000 53110000 35952000 32522000 36410000 47369000 42893000 63627000 4279700 78705000 46878000 75010000 53007000 38500000 34514000 35541000 45235000 5 5 4 5 5 5 5 5 5 5 5 23789000 41175000 339110 44221000 27492000 20541000 25602000 18482000 17872000 20043000 28202000 22152000 38432000 2220500 44544000 26326000 22340000 25829000 18942000 18886000 19511000 26885000 18 18 11 18 18 18 18 18 18 18 18 6296000000 3707600000 2588400000 15850 783 14541 81667;81668;81669;81670;81671;81672;81673;81674;81675;81676;81677;81678;81679;81680;81681 98758;98759;98760;98761;98762;98763;98764;98765;98766;98767;98768;98769;98770;98771;98772;98773;98774;98775;98776;98777;98778;98779;98780;98781 98773 24 RFGSEFSPELQASFQK Unmodified 1856.9057 0.90571227 53 CON__Q3SX09 yes yes 0 0 0 1 By MS/MS By MS/MS 7.2 0.748 1 2 2 2 3 58.001 58.354 3 1.8274E-43 16966 20211116_3447_TMUAki_TMT10x_S_F8 236.03 221.47 + 25807000 43866000 258830 42449000 40998000 60964000 42749000 60663000 66986000 66405000 46140000 24029000 40926000 2428000 43682000 39360000 60957000 44021000 61865000 66347000 64618000 45155000 6 6 5 6 6 6 6 6 6 6 6 15244000 25206000 100960 24420000 29455000 48456000 28850000 37428000 41381000 40941000 26937000 14193000 23517000 1391400 25327000 28223000 47633000 29683000 38716000 41038000 39840000 26432000 3 3 2 3 3 3 3 3 3 3 3 10563000 18660000 157870 18029000 11543000 12508000 13899000 23235000 25605000 25464000 19203000 9836000 17409000 1036600 18355000 11136000 13324000 14338000 23149000 25309000 24778000 18723000 3 3 3 3 3 3 3 3 3 3 3 8882600000 5351000000 3531600000 15851 53 14542 81682;81683;81684;81685;81686 98782;98783;98784;98785;98786;98787;98788 98788 7 RFGVPVIADGGIQNVGHIAK Unmodified 2047.1327 0.13269251 640 P12268 IMPDH2 Inosine-5'-monophosphate dehydrogenase 2 yes yes 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 56.34 56.114 4 1.8456E-51 16788 20211116_3440_TMUAki_TMT10x_S_F2 229.96 207.31 14541000 22968000 104500 22180000 19206000 28733000 19184000 18752000 18993000 18019000 19530000 13538000 21429000 1171900 22781000 18409000 28643000 19454000 19548000 19349000 17629000 18823000 5 5 2 5 5 5 5 5 5 5 5 11469000 17201000 104500 16833000 16057000 25502000 15994000 14498000 14708000 13737000 14810000 10679000 16049000 1026800 17328000 15395000 25197000 16187000 15274000 15023000 13448000 14283000 4 4 2 4 4 4 4 4 4 4 4 3072000 5767900 0 5346700 3149200 3231500 3190100 4254000 4284800 4281600 4720600 2859400 5380500 145190 5452600 3013400 3445500 3267600 4274400 4326600 4180500 4540300 1 1 0 1 1 1 1 1 1 1 1 3347800000 2092600000 1255200000 15852 640 14543 81687;81688;81689 98789;98790;98791;98792;98793 98793 5 RFKDPGLVDQLVK Unmodified 1513.8617 0.86166261 1107 P49591 SARS Serine--tRNA ligase, cytoplasmic yes yes 0 0 0 2 By MS/MS By MS/MS 3.56 3.17 4 2 3 5 4 52.382 52.283 3;4 2.139E-09 16527 20211116_3429_TMUAki_TMT10x_P_F2 136.24 102.83 22817000 37689000 393920 37306000 49293000 56287000 35256000 35956000 42278000 36301000 36886000 21248000 35167000 2021000 38369000 46932000 55713000 36713000 37594000 42512000 35439000 35750000 8 8 6 8 8 8 8 8 8 8 8 18074000 29515000 306840 29208000 44243000 51812000 31101000 28819000 33971000 29031000 29002000 16830000 27539000 1542300 30157000 42108000 50872000 32323000 30468000 34257000 28344000 28131000 5 5 3 5 5 5 5 5 5 5 5 4743700 8174300 87080 8098000 5049200 4474600 4154800 7136500 8307100 7269800 7883700 4417500 7627200 478720 8212500 4824200 4841700 4389700 7125500 8254400 7094500 7618200 3 3 3 3 3 3 3 3 3 3 3 5317700000 3662000000 1655700000 15853 1107 14544 81690;81691;81692;81693;81694;81695;81696;81697;81698 98794;98795;98796;98797;98798;98799;98800;98801 98796 8 RFKIPGSPPESMGR Oxidation (M) 1573.8035 0.8034958 1133 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 1 2 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 34.847 34.617 4 0.00013824 10818 20211116_3441_TMUAki_TMT10x_S_F3 87.447 67.066 737540 1030200 17140 1201400 1296700 1076000 741230 811550 910970 746430 973350 686850 961960 84028 1211700 1230300 1098000 786160 836530 921540 731690 937020 2 2 1 2 2 2 2 2 2 2 2 480230 607160 0 717160 1034100 827320 485700 473140 513970 452280 568420 447130 566950 46648 725500 977730 828070 522220 498310 523570 442580 546650 1 1 0 1 1 1 1 1 1 1 1 257320 423080 17140 484280 262520 248680 255530 338410 397000 294150 404930 239720 395010 37380 486200 252580 269890 263940 338220 397970 289110 390370 1 1 1 1 1 1 1 1 1 1 1 212740000 82690000 130050000 15854 1133 14545 81699;81700 98802;98803 98803 1491 2 RFLGTEVLLR Unmodified 1202.7135 0.71354181 2161 Q8IXT5 RBM12B RNA-binding protein 12B yes yes 0 0 0 1 By MS/MS 3 0 1 1 51.779 51.412 3 0.0061246 17736 20211116_3441_TMUAki_TMT10x_S_F3 65.842 40.405 967860 1510900 0 1621300 1032300 765410 875060 1051400 1027400 907670 1165500 901170 1410200 81102 1633400 985870 838970 900550 1050300 1043400 892400 1120000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 967860 1510900 0 1621300 1032300 765410 875060 1051400 1027400 907670 1165500 901170 1410200 81102 1633400 985870 838970 900550 1050300 1043400 892400 1120000 1 1 0 1 1 1 1 1 1 1 1 77685000 0 77685000 15855 2161 14546 81701 98804 98804 1 RFLSLPQPER Unmodified 1241.6881 0.68805534 1488 Q01826;Q01826-2 SATB1 DNA-binding protein SATB1 yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 43.261 43.278 3 4.7314E-09 12903 20211116_3429_TMUAki_TMT10x_P_F2 130.1 100.62 759690 1221900 21008 1582800 633940 621230 568450 950990 888010 834240 999680 707500 1141500 80801 1574900 607480 699590 589920 946760 893380 819580 960900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 759690 1221900 21008 1582800 633940 621230 568450 950990 888010 834240 999680 707500 1141500 80801 1574900 607480 699590 589920 946760 893380 819580 960900 1 1 1 1 1 1 1 1 1 1 1 58503000 0 58503000 15856 1488 14547 81702;81703 98805;98806 98805 2 RFMQTFVLAPEGSVANK Oxidation (M) 1909.972 0.9720177 1616 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 0 0 1 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 53.089 52.944 3 5.9591E-06 16804 20211116_3429_TMUAki_TMT10x_P_F2 97.183 69.848 6721200 11400000 35220 11221000 8999200 13637000 7552000 10372000 10600000 9055800 9880300 6257900 10636000 569900 11496000 8591200 13670000 7830400 10671000 10625000 8898600 9553400 5 5 2 5 5 5 5 5 5 5 5 4469900 7570000 33514 7449800 6867000 11215000 5538200 7056800 6872200 6179500 6420000 4161800 7063100 395100 7664900 6550400 11099000 5728400 7358500 6916900 6071300 6207100 3 3 1 3 3 3 3 3 3 3 3 2251300 3829700 1706.5 3770900 2132200 2422500 2013800 3315100 3728000 2876400 3460300 2096100 3573300 174800 3831000 2040800 2571100 2101900 3312400 3708100 2827300 3346300 2 2 1 2 2 2 2 2 2 2 2 998200000 713320000 284880000 15857 1616 14548 81704;81705;81706;81707 98807;98808;98809;98810;98811;98812 98809 2168 6 RFNDPSGCAPSPGAYDVK Unmodified 1936.8738 0.87376021 321 O75330;O75330-2;O75330-3 HMMR Hyaluronan mediated motility receptor yes no 0 0 0 1 By MS/MS 6 0 1 1 42.109 42.273 3 1.3317E-08 10702 20211116_3445_TMUAki_TMT10x_S_F6 117.84 107.59 428910 701730 4858.2 991190 265130 259540 190360 654750 973700 692570 698180 399390 655880 37325 979790 252600 318410 221250 646890 946520 674840 682030 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 428910 701730 4858.2 991190 265130 259540 190360 654750 973700 692570 698180 399390 655880 37325 979790 252600 318410 221250 646890 946520 674840 682030 2 2 1 2 2 2 2 2 2 2 2 32952000 0 32952000 15858 321 14549 81708 98813;98814 98813 2 RFPGYDSESK Unmodified 1184.5462 0.54620171 1051 P46777 RPL5 60S ribosomal protein L5 yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 34.635 34.686 3 2.0561E-08 8307 20211116_3431_TMUAki_TMT10x_P_F4 160.88 134.94 7174100 10412000 24802 12213000 23185000 13288000 9048300 8181500 10159000 6182700 10251000 6679700 9722200 817380 12348000 21876000 13356000 9951700 8516200 10289000 6120700 9885500 3 3 2 3 3 3 3 3 3 3 3 5745300 8210800 5227.9 9632800 21732000 12190000 7522800 6494600 8070700 4841100 8170000 5349300 7666900 680340 9764900 20479000 12133000 8390600 6841200 8190100 4796200 7878300 2 2 1 2 2 2 2 2 2 2 2 1428700 2201200 19574 2580200 1453000 1097700 1525500 1686800 2087800 1341600 2080500 1330400 2055300 137030 2583300 1396300 1223000 1561000 1675000 2099100 1324500 2007200 1 1 1 1 1 1 1 1 1 1 1 1016900000 785420000 231490000 15859 1051 14550 81709;81710;81711 98815;98816;98817 98815 3 RFPVAPLIPYPLITK Unmodified 1724.0389 0.038898694 1118 P49756;P49756-2;P49756-3 RBM25 RNA-binding protein 25 yes no 0 0 0 1 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 77.182 77.196 3 1.4699E-09 26643 20211116_3435_TMUAki_TMT10x_P_F7 128.73 113.7 26881000 45299000 265140 41012000 35476000 42491000 34866000 37650000 26957000 33129000 33424000 25030000 42253000 2484400 42164000 34010000 43087000 35153000 38389000 28000000 32542000 32043000 5 5 4 5 5 5 5 5 5 5 5 12659000 20933000 41897 19557000 12446000 25116000 15308000 15886000 13049000 14266000 14775000 11786000 19528000 973920 20131000 12001000 25036000 15308000 16569000 13435000 14000000 14199000 2 2 1 2 2 2 2 2 2 2 2 14222000 24366000 223240 21455000 23030000 17375000 19558000 21765000 13908000 18863000 18649000 13244000 22725000 1510500 22032000 22008000 18051000 19845000 21820000 14565000 18542000 17844000 3 3 3 3 3 3 3 3 3 3 3 7178000000 4066700000 3111300000 15860 1118 14551 81712;81713;81714;81715;81716 98818;98819;98820;98821;98822 98818 5 RFPVDIFYTK Unmodified 1284.6867 0.68665836 257 O60231 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 yes yes 0 0 0 1 By MS/MS 3 0 1 1 64.567 64.116 3 0.00083418 22902 20211116_3441_TMUAki_TMT10x_S_F3 89.189 71.863 2682700 4166600 25857 4409900 2565800 2573500 2448900 2378700 2283300 2664700 2979000 2498100 3888800 244880 4454200 2458800 2730600 2485000 2436900 2354800 2590700 2852200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2682700 4166600 25857 4409900 2565800 2573500 2448900 2378700 2283300 2664700 2979000 2498100 3888800 244880 4454200 2458800 2730600 2485000 2436900 2354800 2590700 2852200 1 1 1 1 1 1 1 1 1 1 1 216760000 0 216760000 15861 257 14552 81717 98823 98823 1 RFPVGPPK Unmodified 896.52322 0.52322184 652 P13521 SCG2 Secretogranin-2;Secretoneurin;Manserin yes yes 0 0 0 1 By MS/MS 3 0 1 1 37.14 36.894 3 0.0033615 11757 20211116_3441_TMUAki_TMT10x_S_F3 82.426 62.639 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15862 652 14553 81718 98824 98824 1 RFQILGK Unmodified 860.52322 0.52322184 2326 Q8WXX5 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 43.335 43.492 3 0.00085691 11812 20211116_3431_TMUAki_TMT10x_P_F4 146.94 75.567 2198100 3116300 0 3539300 4050100 3207500 2394600 2579900 2765800 2478300 2991400 2046400 2909400 181010 3575900 3840000 3273900 2527000 2651700 2805500 2424600 2878700 2 2 0 2 2 2 2 2 2 2 2 1212300 1619400 0 1909500 3092300 2358300 1402900 1420300 1527400 1357000 1651200 1128700 1512100 114490 1934200 2921800 2353700 1515200 1489500 1552800 1328000 1589000 1 1 0 1 1 1 1 1 1 1 1 985730 1496900 0 1629900 957790 849180 991730 1159600 1238500 1121200 1340200 917690 1397300 66525 1641700 918260 920220 1011800 1162200 1252700 1096600 1289700 1 1 0 1 1 1 1 1 1 1 1 218150000 134020000 84128000 15863 2326 14554 81719;81720;81721 98825;98826;98827 98826 3 RFQLEELRK Unmodified 1217.6881 0.68805534 2315 Q8WWM7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7-3 ATXN2L Ataxin-2-like protein yes no 0 0 0 2 By MS/MS By matching 7.67 0.471 1 2 2 1 38.91 39.255 4 0.00048703 9794 20211116_3436_TMUAki_TMT10x_P_F8 117.31 79.59 366580 486540 0 673480 1030300 683690 378370 323790 394180 310640 474910 341320 454690 38764 674010 971410 687780 418370 346980 403180 303930 455630 1 1 0 1 1 1 1 1 1 1 1 366580 486540 0 673480 1030300 683690 378370 323790 394180 310640 474910 341320 454690 38764 674010 971410 687780 418370 346980 403180 303930 455630 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 99096000 64307000 34789000 15864 2315 14555 81722;81723;81724 98828 98828 1 RFQLLEGPPESMGR Unmodified 1615.8141 0.81406049 884 P31150 GDI1 Rab GDP dissociation inhibitor alpha yes yes 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 50.162 50.73 3 2.3004E-09 16157 20211116_3446_TMUAki_TMT10x_S_F7 132.15 117.92 4702200 7348400 3708.2 8457900 6629600 7029900 5049600 7236300 6954500 5513600 6663900 4378100 6861000 401710 8528700 6316100 7254300 5263600 7295400 6981400 5455800 6437400 2 2 1 2 2 2 2 2 2 2 2 2212800 3293200 0 3966800 3913300 4917000 2928800 3320700 3110800 2401100 3025100 2060200 3075400 188680 4013400 3726300 4914600 3028000 3429300 3153700 2382900 2920800 1 1 0 1 1 1 1 1 1 1 1 2489400 4055200 3708.2 4491100 2716300 2112900 2120700 3915700 3843700 3112400 3638800 2317900 3785600 213020 4515300 2589800 2339700 2235600 3866200 3827700 3072900 3516600 1 1 1 1 1 1 1 1 1 1 1 463680000 314540000 149130000 15865 884 14556 81725;81726 98829;98830 98830 2 RFQLLEGPPESMGR Oxidation (M) 1631.809 0.80897511 884 P31150 GDI1 Rab GDP dissociation inhibitor alpha yes yes 0 0 1 1 By MS/MS 6 0 1 1 44.416 44.581 3 0.00011309 11560 20211116_3445_TMUAki_TMT10x_S_F6 86.539 75.099 1855100 2959100 0 3574900 1860000 1839800 1738500 2438700 2599200 2454700 2352000 1727200 2763400 143590 3577500 1779700 1994700 1796500 2449700 2597800 2396800 2276500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1855100 2959100 0 3574900 1860000 1839800 1738500 2438700 2599200 2454700 2352000 1727200 2763400 143590 3577500 1779700 1994700 1796500 2449700 2597800 2396800 2276500 1 1 0 1 1 1 1 1 1 1 1 135050000 0 135050000 15866 884 14556 81727 98831 98831 1059 1 RFQNVAK Unmodified 861.48209 0.48208531 672 P14625;Q58FF3 HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 30.136 30.081 3 0.00142 7582 20211116_3429_TMUAki_TMT10x_P_F2 125.08 97.26 1467700 2551200 929.47 2007800 2057400 2214800 1611900 934840 1303900 1059800 1665100 1366500 2378500 123490 2089800 1961100 2214700 1648800 1018800 1352800 1030000 1595100 3 3 1 3 3 3 3 3 3 3 3 1029100 1738400 929.47 1396400 1648900 1831100 1175000 672920 901260 727460 1152100 958200 1620800 89733 1455200 1568800 1812500 1208200 744260 937750 708230 1103700 2 2 1 2 2 2 2 2 2 2 2 438530 812790 0 611430 408520 383730 436890 261920 402620 332390 512970 408300 757670 33753 634580 392280 402220 440620 274560 415010 321720 491430 1 1 0 1 1 1 1 1 1 1 1 52777000 39500000 13277000 15867 672 14557 81728;81729;81730 98832;98833;98834 98833 3 RFQSVESGANNVVFIR Unmodified 1821.9486 0.94858014 3008 Q9NXG2 THUMPD1 THUMP domain-containing protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 48.255 48.222 3 9.0155E-51 13285 20211116_3428_TMUAki_TMT10x_P_F1 228.9 198.01 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15868 3008 14558 81731;81732;81733 98835;98836;98837 98836 3 RFSDIQIR Unmodified 1033.5669 0.56687757 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 36.353 36.323 3 0.00024413 10438 20211116_3439_TMUAki_TMT10x_S_F1 147.2 85.237 797450 1173500 142.77 1402100 1349100 1125700 839470 969260 1108500 901620 1101400 742500 1095800 72407 1410100 1280700 1160300 886490 991350 1115700 883360 1062700 2 2 1 2 2 2 2 2 2 2 2 348280 502610 142.77 628170 911460 741760 409680 411750 472030 388810 472960 324290 469460 36896 633660 861350 741230 443720 434600 477510 380680 456220 1 1 1 1 1 1 1 1 1 1 1 449170 670850 0 773920 437640 383960 429790 557520 636520 512810 628450 418210 626360 35512 776410 419330 419110 442770 556750 638210 502680 606500 1 1 0 1 1 1 1 1 1 1 1 153490000 93523000 59969000 15869 629 14559 81734;81735 98838;98839 98839 2 RFSDQFPLPLK Unmodified 1346.7347 0.73467118 2381 Q92973;Q92973-2;Q92973-3 TNPO1 Transportin-1 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 3 1 60.755 60.489 3 6.8981E-05 21421 20211116_3441_TMUAki_TMT10x_S_F3 88.441 61.326 4040700 6078900 95736 5111900 4973100 7424600 4816400 4967100 5225900 4855000 5657500 3763000 5668600 437290 5317900 4770300 7365800 4906400 5170900 5313900 4746200 5444200 1 1 1 1 1 1 1 1 1 1 1 4040700 6078900 95736 5111900 4973100 7424600 4816400 4967100 5225900 4855000 5657500 3763000 5668600 437290 5317900 4770300 7365800 4906400 5170900 5313900 4746200 5444200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 886070000 886070000 0 15870 2381 14560 81736;81737;81738;81739 98840;98841;98842;98843 98843 4 RFSEGTSADREIQR Unmodified 1650.8074 0.80739521 1357 P62333 PSMC6 26S protease regulatory subunit 10B yes yes 0 0 0 2 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 28.117 28 3;4 0.0015595 8333 20211116_3441_TMUAki_TMT10x_S_F3 74.783 52.943 338680 535680 0 460140 615050 429090 514620 340420 371940 296420 464410 315300 499570 22577 474290 586890 437050 522840 349270 387910 291310 445140 2 2 0 2 2 2 2 2 2 2 2 44320 81388 0 74131 92408 90526 46126 50858 49396 40554 62428 41266 75916 0 76383 87441 90319 49309 53402 50571 40032 59818 1 1 0 1 1 1 1 1 1 1 1 294360 454300 0 386010 522640 338560 468500 289560 322540 255870 401980 274040 423650 22577 397910 499440 346730 473530 295870 337340 251280 385320 1 1 0 1 1 1 1 1 1 1 1 13311000 4690600 8620600 15871 1357 14561 81740;81741 98844;98845 98845 2 RFSLFGK Unmodified 853.48102 0.48102268 1475 Q01082 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 0 0 0 1 By MS/MS 6 0 1 1 50.141 50.241 3 0.026498 13572 20211116_3434_TMUAki_TMT10x_P_F6 70.856 44.441 1766200 2559200 11792 3203200 3779400 3768900 1884900 1761400 1999900 1809900 1970800 1644600 2390400 185620 3230800 3576900 3759500 2014600 1893700 2028500 1765700 1902100 1 1 1 1 1 1 1 1 1 1 1 1766200 2559200 11792 3203200 3779400 3768900 1884900 1761400 1999900 1809900 1970800 1644600 2390400 185620 3230800 3576900 3759500 2014600 1893700 2028500 1765700 1902100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 102260000 102260000 0 15872 1475 14562 81742 98846 98846 1 RFSMVVQDGIVK Oxidation (M) 1393.7388 0.73877028 860 P30044;P30044-2;P30044-3;P30044-4 PRDX5 Peroxiredoxin-5, mitochondrial yes no 0 0 1 1 By MS/MS By MS/MS 5 3.29 2 1 2 2 3 45.32 45.466 3 4.9457E-06 12259 20211116_3436_TMUAki_TMT10x_P_F8 106.54 77.737 11957000 18876000 101000 23198000 22399000 19891000 13316000 12141000 15996000 12894000 15669000 11134000 17629000 1231700 23311000 21255000 20293000 14065000 12758000 16145000 12562000 15125000 5 5 5 5 5 5 5 5 5 5 5 8939200 13862000 64054 16913000 19619000 17830000 10952000 8412900 11704000 9277100 11326000 8323800 12946000 950390 17052000 18597000 17896000 11585000 9054800 11860000 9024900 10937000 3 3 3 3 3 3 3 3 3 3 3 3018000 5013900 36949 6284500 2780300 2060300 2364000 3728400 4292500 3616600 4343100 2810400 4683300 281320 6258300 2657700 2397000 2479300 3703300 4284300 3536800 4188000 2 2 2 2 2 2 2 2 2 2 2 1017500000 747360000 270130000 15873 860 14563 81743;81744;81745;81746;81747 98847;98848;98849;98850;98851;98852;98853 98848 1028 7 RFSMVVQDGIVK Unmodified 1377.7439 0.74385566 860 P30044;P30044-2;P30044-3;P30044-4 PRDX5 Peroxiredoxin-5, mitochondrial yes no 0 0 0 1 By matching By MS/MS 1.33 0.471 2 1 1 2 51.763 51.614 3 8.4187E-06 16788 20211116_3439_TMUAki_TMT10x_S_F1 104.41 61.692 3346100 5540300 25163 6546800 3453900 2963300 3101100 4384600 4165700 3660700 4599300 3115800 5173500 302380 6554100 3304500 3271800 3197000 4364600 4206700 3605000 4423400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3346100 5540300 25163 6546800 3453900 2963300 3101100 4384600 4165700 3660700 4599300 3115800 5173500 302380 6554100 3304500 3271800 3197000 4364600 4206700 3605000 4423400 2 2 2 2 2 2 2 2 2 2 2 572720000 317420000 255310000 15874 860 14563 81748;81749;81750 98854;98855 98854 2 RFSPIPFPPLSYK Unmodified 1547.85 0.85003529 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 68.339 68.737 3 7.6829E-06 22998 20211116_3435_TMUAki_TMT10x_P_F7 94.673 65.867 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15875 1997 14564 81751;81752 98856;98857 98856 2 RFTAQGLPDLNHSQVYAVK Unmodified 2143.1174 0.11743638 2376 Q92900;Q92900-2 UPF1 Regulator of nonsense transcripts 1 yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 51.482 51.338 4 1.6804E-17 14840 20211116_3440_TMUAki_TMT10x_S_F2 142.3 112.16 17023000 29824000 158720 31630000 26129000 29100000 18779000 24500000 24313000 22096000 25042000 15851000 27835000 1650100 32102000 24877000 29698000 19604000 25071000 24518000 21679000 24135000 6 6 4 6 6 6 6 6 6 6 6 7567200 13391000 93961 14163000 15759000 20233000 10785000 12040000 11182000 10229000 11612000 7046300 12498000 793020 14485000 14989000 20054000 11213000 12600000 11374000 10064000 11189000 3 3 1 3 3 3 3 3 3 3 3 9455700 16433000 64755 17467000 10370000 8867200 7993200 12461000 13131000 11867000 13430000 8804700 15337000 857100 17617000 9887600 9644500 8391200 12470000 13145000 11615000 12946000 3 3 3 3 3 3 3 3 3 3 3 1306200000 351990000 954170000 15876 2376 14565 81753;81754;81755 98858;98859;98860;98861;98862;98863 98862 6 RFVFHQEQVYCPDCAK Unmodified 2082.9404 0.94039999 1659 Q13642-1;Q13642-5;Q13642-4 FHL1 Four and a half LIM domains protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 42.209 42.449 4 1.8416E-07 11006 20211116_3436_TMUAki_TMT10x_P_F8 109.08 98.445 2594300 4166200 12949 4965900 3140300 2642500 2411600 2634200 2807200 2400100 3088600 2415600 3890500 226140 4974800 2993000 2835100 2496600 2671700 2848500 2353700 2970700 2 2 1 2 2 2 2 2 2 2 2 930130 1364300 0 1659200 1827500 1552200 1194300 879430 927730 770320 979810 865970 1274100 81017 1670300 1735800 1572800 1236300 924830 957320 756830 943580 1 1 0 1 1 1 1 1 1 1 1 1664200 2801900 12949 3306600 1312800 1090300 1217400 1754800 1879400 1629800 2108800 1549600 2616400 145120 3304500 1257200 1262400 1260300 1746900 1891200 1596900 2027200 1 1 1 1 1 1 1 1 1 1 1 639900000 538380000 101520000 15877 1659 14566 81756;81757;81758 98864;98865 98864 2 RFVGHTK Unmodified 843.47152 0.47152062 1405 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 27.104 26.839 3 0.0033805 7807 20211116_3441_TMUAki_TMT10x_S_F3 105.81 79.206 342310 602000 6087 485840 397960 495500 387730 284780 349950 343580 453910 318770 561300 34832 503990 381690 499450 392650 301940 361350 333140 434650 2 2 2 2 2 2 2 2 2 2 2 180420 301280 5118.5 246980 220940 330780 200180 169820 218700 199680 248860 168030 280930 20296 257050 211630 328190 204710 181680 222750 193790 239130 1 1 1 1 1 1 1 1 1 1 1 161890 300720 968.48 238860 177020 164720 187540 114960 131240 143900 205050 150740 280370 14536 246940 170060 171260 187940 120260 138600 139350 195520 1 1 1 1 1 1 1 1 1 1 1 11509000 8285300 3223700 15878 1405 14567 81759;81760 98866;98867 98867 2 RFVMEVEVDGQK Oxidation (M) 1451.7079 0.70786408 1576;2556 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3;Q96SI9;Q96SI9-2 ILF3;STRBP Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein no no 0 0 1 1 By MS/MS By MS/MS 4.33 1.15 1 1 2 4 1 3 6 41.004 41.113 3 8.0568E-13 9886 20211116_3444_TMUAki_TMT10x_S_F5 142.76 127.86 7315500 10129000 146190 13312000 10834000 9220700 6649100 4830600 6740600 5272000 8090700 6812500 9463400 790990 13294000 10292000 9547100 6966100 5146200 6901300 5130700 7763000 4 4 3 4 4 4 4 4 4 4 4 6195400 8302400 133170 11055000 9758800 8357900 5544900 3893900 5434300 4286700 6626700 5769500 7757300 687660 11043000 9259300 8580500 5841300 4196100 5575600 4170400 6355600 2 2 2 2 2 2 2 2 2 2 2 1120100 1826600 13016 2256800 1075300 862790 1104200 936740 1306300 985270 1464000 1043000 1706000 103320 2251000 1032500 966590 1124800 950130 1325700 960270 1407400 2 2 1 2 2 2 2 2 2 2 2 1200400000 839150000 361250000 15879 1576;2556 14568 81761;81762;81763;81764;81765;81766;81767;81768;81769 98868;98869;98870;98871;98872;98873;98874;98875;98876;98877 98875 2128 10 RFVMEVEVDGQK Unmodified 1435.7129 0.71294946 1576;2556 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3;Q96SI9;Q96SI9-2 ILF3;STRBP Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein no no 0 0 0 1 By MS/MS By MS/MS 4.6 0.8 3 1 1 2 3 48.978 49.133 3 2.9732E-16 13159 20211116_3444_TMUAki_TMT10x_S_F5 178.1 137.6 2323100 3669500 13593 4803600 2117900 1369100 1976500 1826000 1817100 1810800 2823100 2163200 3428300 202400 4769000 2028000 1616900 2007300 1833000 1891200 1769200 2692200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2323100 3669500 13593 4803600 2117900 1369100 1976500 1826000 1817100 1810800 2823100 2163200 3428300 202400 4769000 2028000 1616900 2007300 1833000 1891200 1769200 2692200 1 1 1 1 1 1 1 1 1 1 1 250950000 0 250950000 15880 1576;2556 14568 81770;81771;81772;81773;81774 98878;98879;98880;98881;98882 98881 5 RFVNVVPTFGK Unmodified 1262.7135 0.71354181 1375 P62861 FAU 40S ribosomal protein S30 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.816 1 1 1 2 1 54.046 54.189 3 0.001143 15274 20211116_3444_TMUAki_TMT10x_S_F5 79.889 58.383 19876000 32744000 235360 35172000 36368000 48269000 24846000 45793000 34465000 27298000 30788000 18508000 30563000 1979300 35906000 34588000 48310000 26103000 46131000 34511000 27423000 29814000 5 5 2 5 5 5 5 5 5 5 5 14432000 23564000 235360 25470000 31023000 43668000 20599000 35370000 26169000 20387000 22906000 13439000 21994000 1592400 26121000 29494000 43177000 21612000 35932000 26263000 20528000 22197000 4 4 2 4 4 4 4 4 4 4 4 5444000 9180800 0 9702200 5345000 4600600 4247400 10424000 8296100 6911100 7882100 5068400 8568600 386930 9784700 5093300 5132300 4491000 10199000 8248000 6894400 7616400 1 1 0 1 1 1 1 1 1 1 1 1634000000 825750000 808290000 15881 1375 14569 81775;81776;81777 98883;98884;98885;98886;98887 98887 5 RFVNVVPTFGKK Unmodified 1390.8085 0.80850483 1375 P62861 FAU 40S ribosomal protein S30 yes yes 0 0 0 2 By matching By MS/MS 6.5 0.5 1 1 1 1 48.289 48.578 4 0.01009 15232 20211116_3446_TMUAki_TMT10x_S_F7 61.932 43.152 2040100 3414200 0 3735600 2067500 1444200 1249300 4065800 3337900 2770800 3493800 1899500 3187000 165960 3754000 1961600 1671500 1374600 3962700 3309900 2759500 3365500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2040100 3414200 0 3735600 2067500 1444200 1249300 4065800 3337900 2770800 3493800 1899500 3187000 165960 3754000 1961600 1671500 1374600 3962700 3309900 2759500 3365500 1 1 0 1 1 1 1 1 1 1 1 368670000 202170000 166500000 15882 1375 14570 81778;81779 98888 98888 1 RFVSEAELDER Unmodified 1349.6575 0.65754307 2761 Q9GZU8 FAM192A Protein FAM192A yes yes 0 0 0 1 By MS/MS 3 0 1 1 36.148 36.155 3 0.004578 10424 20211116_3430_TMUAki_TMT10x_P_F3 66.708 39.226 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15883 2761 14571 81780 98889 98889 1 RFVSEGDGGR Unmodified 1078.5156 0.51557028 1902 Q53EL6;Q53EL6-2 PDCD4 Programmed cell death protein 4 yes no 0 0 0 1 By MS/MS 3 0 1 1 27.367 27.084 3 0.029187 7951 20211116_3441_TMUAki_TMT10x_S_F3 55.261 22.141 79862 136950 42.047 121960 104860 103990 125500 82709 91109 107740 115950 74359 127740 7010.4 125210 101070 106560 125160 85916 95074 104200 111080 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 79862 136950 42.047 121960 104860 103990 125500 82709 91109 107740 115950 74359 127740 7010.4 125210 101070 106560 125160 85916 95074 104200 111080 1 1 1 1 1 1 1 1 1 1 1 2472900 0 2472900 15884 1902 14572 81781 98890 98890 1 RFYEQMNGPVAGASR Unmodified 1681.7995 0.79947306 856;855 P29692;P29692-3;P29692-4;P29692-2 EEF1D Elongation factor 1-delta no no 0 0 0 1 By MS/MS By matching 1 0 2 1 1 37.488 37.445 3 4.5473E-14 8969 20211116_3428_TMUAki_TMT10x_P_F1 144.08 128.88 461880 706780 21011 908670 1390400 951620 662970 510890 472510 407740 693050 430210 660260 70880 913380 1316200 956900 704620 538590 496860 402470 661740 1 1 1 1 1 1 1 1 1 1 1 461880 706780 21011 908670 1390400 951620 662970 510890 472510 407740 693050 430210 660260 70880 913380 1316200 956900 704620 538590 496860 402470 661740 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 69899000 56445000 13454000 15885 855;856 14573 81782;81783 98891 98891 1 RGAAGDWGER Unmodified 1073.5003 0.50025457 1740 Q14978;Q14978-2;Q14978-3 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 27.55 27.433 3 4.9361E-05 8148 20211116_3441_TMUAki_TMT10x_S_F3 93.839 68.713 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15886 1740 14574 81784;81785 98892;98893 98893 2 RGADDDRPSWR Unmodified 1329.6174 0.61740959 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 2 By MS/MS 3 0 1 1 26.91 26.617 4 0.043805 7775 20211116_3441_TMUAki_TMT10x_S_F3 53.967 41.606 161470 227330 0 147920 208100 286760 156460 148450 155970 153670 177980 150340 211820 13652 158590 198220 280460 161390 158070 159480 149870 171010 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 161470 227330 0 147920 208100 286760 156460 148450 155970 153670 177980 150340 211820 13652 158590 198220 280460 161390 158070 159480 149870 171010 1 1 0 1 1 1 1 1 1 1 1 2893300 0 2893300 15887 1684 14575 81786 98894 98894 1 RGAEDDRGPWR Unmodified 1313.6225 0.62249497 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 2 By matching By MS/MS 2.5 0.5 1 1 1 1 27.043 26.778 4 0.084512 7912 20211116_3441_TMUAki_TMT10x_S_F3 43.68 30.001 71677 112900 1312.8 103630 81399 74927 78594 56181 72638 88583 85478 66748 105310 7302.1 105940 78058 77680 79683 59037 74613 85180 82060 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 71677 112900 1312.8 103630 81399 74927 78594 56181 72638 88583 85478 66748 105310 7302.1 105940 78058 77680 79683 59037 74613 85180 82060 1 1 1 1 1 1 1 1 1 1 1 4881900 904900 3977000 15888 1684 14576 81787;81788 98895 98895 1 RGAEGILAPQPPPPQQHQERPGAAAIGSAR Unmodified 3056.6016 0.60164696 2315 Q8WWM7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7-3;Q8WWM7-7 ATXN2L Ataxin-2-like protein yes no 0 0 0 2 By MS/MS 1 0 1 1 33.69 33.69 5 1.7163E-06 7445 20211116_3428_TMUAki_TMT10x_P_F1 76.002 59.064 124950 221920 910.83 338340 463940 417730 261870 188420 266650 179160 245490 116350 207510 8142.9 338120 439820 415510 276340 202870 270310 175360 237470 2 2 1 2 2 2 2 2 2 2 2 124950 221920 910.83 338340 463940 417730 261870 188420 266650 179160 245490 116350 207510 8142.9 338120 439820 415510 276340 202870 270310 175360 237470 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 96213000 96213000 0 15889 2315 14577 81789 98896;98897 98896 2 RGAGMPGQHGQITQQELDTVVK Oxidation (M) 2365.1808 0.18084127 1090 P49257 LMAN1 Protein ERGIC-53 yes yes 0 0 1 1 By MS/MS 5 0 1 1 37.199 37.361 4 4.4496E-11 8479 20211116_3444_TMUAki_TMT10x_S_F5 118.52 103.27 209260 397470 297.41 485610 139440 123610 116430 206500 220230 124320 258600 194840 371210 16648 483760 133140 150120 122520 203310 220860 124800 248280 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 209260 397470 297.41 485610 139440 123610 116430 206500 220230 124320 258600 194840 371210 16648 483760 133140 150120 122520 203310 220860 124800 248280 1 1 1 1 1 1 1 1 1 1 1 24319000 0 24319000 15890 1090 14578 81790 98898 98898 1414 1 RGALIVLEGVDR Unmodified 1296.7514 0.75138388 790 P23919;P23919-2 DTYMK Thymidylate kinase yes no 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 48.616 48.956 3 3.3716E-15 14877 20211116_3435_TMUAki_TMT10x_P_F7 184.21 145.43 4209800 7207900 133140 7725100 5701700 6340700 4629700 5680800 5908000 5206700 6321000 3920700 6727700 485550 7823700 5447600 6530100 4791700 5795000 5969000 5104700 6084800 5 5 4 5 5 5 5 5 5 5 5 1693400 2739300 39955 2863300 2969300 4012500 2228900 2148800 2348400 2054700 2318600 1577000 2556600 195500 2929400 2830900 3974900 2303300 2275900 2382800 2010600 2237500 2 2 2 2 2 2 2 2 2 2 2 2516500 4468600 93188 4861900 2732400 2328200 2400800 3532100 3559500 3152000 4002400 2343700 4171200 290050 4894300 2616700 2555100 2488500 3519000 3586200 3094100 3847300 3 3 2 3 3 3 3 3 3 3 3 1759800000 996900000 762890000 15891 790 14579 81791;81792;81793;81794 98899;98900;98901;98902;98903 98900 5 RGALQGSAWQVSSEDVR Unmodified 1844.9129 0.91292291 3304 Q9Y4W2;Q9Y4W2-2;Q9Y4W2-3 LAS1L Ribosomal biogenesis protein LAS1L yes no 0 0 0 1 By MS/MS 6 0 1 1 39.311 39.319 3 1.5689E-05 9190 20211116_3434_TMUAki_TMT10x_P_F6 93.342 79.436 662170 1022600 40690 1562700 1670900 1793800 1015200 632720 734100 615720 825730 616850 956180 106950 1559600 1588200 1787100 1055400 701400 762370 602050 793710 1 1 1 1 1 1 1 1 1 1 1 662170 1022600 40690 1562700 1670900 1793800 1015200 632720 734100 615720 825730 616850 956180 106950 1559600 1588200 1787100 1055400 701400 762370 602050 793710 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 73258000 73258000 0 15892 3304 14580 81795 98904 98904 1 RGALVVEDNDSGVPVEETK Unmodified 2013.0015 0.0014631481 2537 Q96PZ0;Q96PZ0-2 PUS7 Pseudouridylate synthase 7 homolog yes no 0 0 0 1 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 43.101 43.08 3 6.5646E-41 14397 20211116_3441_TMUAki_TMT10x_S_F3 208.49 187.26 1513000 2387700 5867.8 2949600 2658100 2231100 1466300 2303700 2517400 1843400 2552900 1408700 2230100 135850 2958600 2518300 2318900 1582200 2324800 2516300 1819400 2461600 4 4 2 4 4 4 4 4 4 4 4 537890 788070 5867.8 1086600 1787700 1322800 744910 648630 762920 534530 869200 500870 736470 67568 1090900 1688300 1317800 810680 690090 779120 526750 835200 2 2 2 2 2 2 2 2 2 2 2 975130 1599600 0 1863000 870330 908360 721380 1655100 1754500 1308900 1683700 907850 1493600 68284 1867700 830050 1001000 771500 1634700 1737200 1292600 1626400 2 2 0 2 2 2 2 2 2 2 2 144760000 39624000 105140000 15893 2537 14581 81796;81797;81798 98905;98906;98907;98908 98908 4 RGAPAAATAPAPTAHK Unmodified 1486.8005 0.80045934 2336 Q92522 H1FX Histone H1x yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 23.891 23.941 4 0.00061331 6038 20211116_3439_TMUAki_TMT10x_S_F1 66.826 45.873 807060 1449200 27209 1152100 938330 1106000 982720 791670 805900 789570 1261900 751660 1351100 94108 1195600 902480 1122500 989020 820720 843790 771230 1203200 2 2 2 2 2 2 2 2 2 2 2 279540 438720 11134 344900 318410 515980 358290 296150 260960 253820 459390 260360 409020 34097 361040 306990 510150 358340 310930 276780 249640 437010 1 1 1 1 1 1 1 1 1 1 1 527520 1010500 16076 807180 619910 589980 624430 495520 544950 535760 802500 491290 942120 60011 834570 595490 612310 630690 509780 567010 521590 766170 1 1 1 1 1 1 1 1 1 1 1 96275000 49789000 46486000 15894 2336 14582 81799;81800 98909;98910 98910 2 RGAPPSSNIEDFHGLLPK Unmodified 1934.001 0.0010096381 1026 P43243 MATR3 Matrin-3 yes yes 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 49.487 49.761 4 2.532E-12 13495 20211116_3447_TMUAki_TMT10x_S_F8 133.86 116.16 35875000 61524000 411010 60433000 47310000 48054000 39330000 46144000 41762000 40114000 50026000 33405000 57404000 3389600 61544000 45179000 49675000 40387000 46832000 42673000 39426000 48002000 9 9 6 9 9 9 9 9 9 9 9 13734000 22671000 295430 22029000 23152000 29509000 21211000 18310000 16648000 15647000 19198000 12790000 21152000 1545900 22631000 22169000 29349000 21476000 19102000 17227000 15392000 18441000 4 4 4 4 4 4 4 4 4 4 4 22141000 38853000 115580 38404000 24157000 18545000 18119000 27834000 25114000 24467000 30827000 20615000 36252000 1843700 38913000 23010000 20326000 18911000 27730000 25446000 24034000 29561000 5 5 2 5 5 5 5 5 5 5 5 2877900000 1572400000 1305500000 15895 1026 14583 81801;81802;81803;81804 98911;98912;98913;98914;98915;98916;98917;98918;98919 98918 9 RGATELTHEDYMEGILEVQAK Oxidation (M) 2405.1533 0.15328912 711 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 1 1 By MS/MS 4.5 0.5 1 1 2 48.025 48.198 4 4.4507E-10 14079 20211116_3442_TMUAki_TMT10x_S_F4 104.63 94.574 2841400 5069400 55604 5421000 2833700 2637400 2447900 4241200 4612400 3872700 4456500 2646100 4731600 287290 5463800 2710800 2894600 2570200 4220200 4592000 3797400 4303800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2841400 5069400 55604 5421000 2833700 2637400 2447900 4241200 4612400 3872700 4456500 2646100 4731600 287290 5463800 2710800 2894600 2570200 4220200 4592000 3797400 4303800 2 2 2 2 2 2 2 2 2 2 2 396360000 0 396360000 15896 711 14584 81805;81806 98920;98921 98920 797 2 RGAYGGGYGGYDDYNGYNDGYGFGSDR Unmodified 2872.1386 0.13857834 894 P31943 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.707 1 2 1 3 1 50.615 50.796 3 2.8401E-19 15029 20211116_3433_TMUAki_TMT10x_P_F5 140.73 135.28 9528200 17867000 798830 17347000 9463000 16082000 13186000 10116000 10985000 10347000 13527000 8877600 16670000 1533500 17715000 9215500 16327000 13112000 10593000 11362000 10096000 12971000 5 5 5 5 5 5 5 5 5 5 5 6156200 11557000 546890 11183000 6502200 12424000 9523900 6626500 7350200 6818200 8956000 5736100 10782000 1024900 11454000 6343700 12450000 9435200 7035600 7629600 6651100 8589800 3 3 3 3 3 3 3 3 3 3 3 3372000 6310200 251930 6163700 2960800 3658300 3662100 3489500 3634700 3529000 4571200 3141500 5887500 508600 6260800 2871800 3877600 3677100 3557600 3732100 3445000 4380700 2 2 2 2 2 2 2 2 2 2 2 1650700000 1148900000 501820000 15897 894 14585 81807;81808;81809;81810 98922;98923;98924;98925;98926;98927 98923 6 RGDALIEMESEQDVQK Oxidation (M) 1862.868 0.86800613 1569 Q12849;Q12849-5 GRSF1 G-rich sequence factor 1 yes no 0 0 1 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 3 1 39.868 39.686 3 4.9667E-15 11429 20211116_3429_TMUAki_TMT10x_P_F2 142.57 126.17 1542500 2507900 16434 2789700 3713700 3212500 2040400 2098000 2531100 1584600 2511200 1436300 2341200 173610 2832400 3519800 3221600 2172300 2174000 2552800 1568800 2423100 3 3 3 3 3 3 3 3 3 3 3 1172100 1894400 12220 2034300 3351700 2911500 1741200 1479600 1774000 1127500 1846500 1091400 1768200 139090 2078600 3174000 2879800 1851400 1566000 1805900 1115700 1779000 2 2 2 2 2 2 2 2 2 2 2 370380 613540 4213.7 755380 362000 301020 299220 618460 757070 457130 664730 344890 573030 34517 753800 345780 341820 320960 607960 746880 453110 644100 1 1 1 1 1 1 1 1 1 1 1 244010000 193900000 50105000 15898 1569 14586 81811;81812;81813;81814 98928;98929;98930;98931 98929 2112 4 RGDDSFGDK Unmodified 995.43084 0.4308376 788 P23588;P23588-2 EIF4B Eukaryotic translation initiation factor 4B yes no 0 0 0 1 By MS/MS 3 0 1 1 30.313 30.05 3 0.00013726 9077 20211116_3441_TMUAki_TMT10x_S_F3 90.913 56.105 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15899 788 14587 81815 98932 98932 1 RGDFFYHSENPKYPEVGDLR Unmodified 2425.1451 0.14510769 2668 Q9BTV4 TMEM43 Transmembrane protein 43 yes yes 0 0 0 2 By matching By MS/MS 7 0 2 1 1 46.698 47.226 5 7.1484E-09 14719 20211116_3446_TMUAki_TMT10x_S_F7 109.37 95.639 2717800 4044000 40022 4919400 2569200 2284500 2353500 3249300 3366200 3084400 3397800 2530900 3776700 260550 4917300 2460500 2511500 2429900 3250000 3381400 3019200 3276700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2717800 4044000 40022 4919400 2569200 2284500 2353500 3249300 3366200 3084400 3397800 2530900 3776700 260550 4917300 2460500 2511500 2429900 3250000 3381400 3019200 3276700 1 1 1 1 1 1 1 1 1 1 1 910840000 553640000 357200000 15900 2668 14588 81816;81817 98933 98933 1 RGDFIPGLR Unmodified 1029.572 0.57196295 557 P08559;P08559-3;P08559-4;P08559-2 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 6.2 2.64 1 2 2 1 4 40.519 40.621 3 7.9962E-05 11628 20211116_3446_TMUAki_TMT10x_S_F7 98.048 68.239 3074200 4893500 21843 5439200 3618700 2972000 2819600 2582700 2736400 2478600 3748600 2862500 4568200 279710 5473400 3450800 3171100 2899300 2642500 2823400 2425100 3584800 4 4 3 4 4 4 4 4 4 4 4 656240 1037500 10169 1206500 1405000 1161000 766020 641380 626380 540960 843160 611100 968750 74371 1218200 1331800 1173900 806100 675330 651040 532470 806660 1 1 1 1 1 1 1 1 1 1 1 2418000 3856000 11674 4232700 2213600 1810900 2053600 1941400 2110000 1937700 2905400 2251400 3599500 205340 4255300 2119000 1997200 2093200 1967100 2172300 1892600 2778100 3 3 2 3 3 3 3 3 3 3 3 488520000 228420000 260100000 15901 557 14589 81818;81819;81820;81821;81822 98934;98935;98936;98937;98938;98939 98937 6 RGDFLIVDPIEEGEK Unmodified 1715.873 0.87301516 2214 Q8N9N8 EIF1AD Probable RNA-binding protein EIF1AD yes yes 0 0 0 1 By MS/MS 2 0 1 1 62.164 61.885 3 2.1828E-06 20464 20211116_3429_TMUAki_TMT10x_P_F2 103.6 81.549 4717100 7192400 76179 7325500 6097900 11356000 6425200 5986000 5887400 5596500 6317000 4392700 6711800 481420 7524100 5859800 11200000 6483600 6345500 6028200 5481900 6080500 1 1 1 1 1 1 1 1 1 1 1 4717100 7192400 76179 7325500 6097900 11356000 6425200 5986000 5887400 5596500 6317000 4392700 6711800 481420 7524100 5859800 11200000 6483600 6345500 6028200 5481900 6080500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 660870000 660870000 0 15902 2214 14590 81823 98940 98940 1 RGDIIGVQGNPGK Unmodified 1309.7102 0.71024735 1760 Q15046;Q15046-2 KARS Lysine--tRNA ligase yes no 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 34.51 34.575 3 0.001066 7244 20211116_3444_TMUAki_TMT10x_S_F5 77.204 61.314 798680 1242800 3832.3 1415000 1838800 1472100 981490 1053100 1061100 845340 1225200 743640 1160300 79080 1432200 1741500 1486700 1042900 1085600 1081800 834160 1176900 2 2 1 2 2 2 2 2 2 2 2 587350 889040 0 1012100 1616100 1296500 774280 796480 784640 627660 899270 546840 830030 57829 1028100 1528100 1292100 829730 829990 801850 619960 863940 1 1 0 1 1 1 1 1 1 1 1 211320 353770 3832.3 402870 222700 175570 207210 256600 276470 217680 325970 196790 330280 21251 404130 213380 194700 213140 255640 279990 214200 312920 1 1 1 1 1 1 1 1 1 1 1 51456000 41111000 10345000 15903 1760 14591 81824;81825 98941;98942 98942 2 RGDINLLMLGDPGTAK Oxidation (M) 1685.8771 0.87705468 912 P33992 MCM5 DNA replication licensing factor MCM5 yes yes 0 0 1 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 56.034 56.386 3 1.2746E-10 16441 20211116_3445_TMUAki_TMT10x_S_F6 125.98 105.87 36664000 62677000 811810 64163000 49575000 63288000 40870000 56700000 54928000 53007000 53558000 34144000 58490000 3977100 65339000 47365000 64379000 42346000 57871000 55216000 51922000 51708000 8 8 8 8 8 8 8 8 8 8 8 18171000 29610000 459650 31020000 31324000 44583000 25816000 27956000 27079000 25995000 26061000 16923000 27635000 2119100 31749000 29924000 44208000 26513000 29205000 27457000 25469000 25172000 4 4 4 4 4 4 4 4 4 4 4 18492000 33067000 352160 33143000 18251000 18705000 15054000 28744000 27849000 27013000 27497000 17221000 30855000 1858000 33590000 17441000 20171000 15833000 28666000 27759000 26453000 26536000 4 4 4 4 4 4 4 4 4 4 4 4557900000 2544000000 2013900000 15904 912 14592 81826;81827;81828;81829 98943;98944;98945;98946;98947;98948;98949;98950 98948 1135 8 RGDINLLMLGDPGTAK Unmodified 1669.8821 0.88214006 912 P33992 MCM5 DNA replication licensing factor MCM5 yes yes 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 61.031 61.38 3 2.7884E-05 19898 20211116_3435_TMUAki_TMT10x_P_F7 92.996 72.615 29970000 49612000 417790 50583000 36177000 43435000 34768000 30882000 26441000 31130000 36538000 27908000 46297000 2961000 51427000 34678000 44407000 35082000 32040000 27621000 30393000 34935000 6 6 6 6 6 6 6 6 6 6 6 14919000 24490000 236060 24895000 20513000 29718000 20456000 17135000 13787000 16504000 19238000 13893000 22853000 1535200 25440000 19681000 29695000 20546000 18038000 14511000 16144000 18390000 3 3 3 3 3 3 3 3 3 3 3 15051000 25122000 181740 25688000 15665000 13717000 14311000 13747000 12654000 14627000 17300000 14016000 23443000 1425800 25987000 14997000 14713000 14536000 14002000 13111000 14249000 16545000 3 3 3 3 3 3 3 3 3 3 3 3226900000 1811400000 1415500000 15905 912 14592 81830;81831;81832;81833 98951;98952;98953;98954;98955;98956 98951 6 RGDIVFVDR Unmodified 1075.5774 0.57744226 179 O15269 SPTLC1 Serine palmitoyltransferase 1 yes yes 0 0 0 1 By MS/MS 5 0 1 1 35.621 35.796 3 0.00034314 7857 20211116_3444_TMUAki_TMT10x_S_F5 117.25 89.997 277730 422190 2852.2 470900 248330 288010 248430 326670 312240 386370 380130 258610 394130 25272 474220 238280 305560 253960 331970 317260 374890 364590 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 277730 422190 2852.2 470900 248330 288010 248430 326670 312240 386370 380130 258610 394130 25272 474220 238280 305560 253960 331970 317260 374890 364590 1 1 1 1 1 1 1 1 1 1 1 19247000 0 19247000 15906 179 14593 81834 98957 98957 1 RGDLPFVVPR Unmodified 1154.656 0.65602693 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 1 By MS/MS By MS/MS 3.75 3.07 3 2 1 2 4 4 45.539 45.462 3 1.4224E-08 11760 20211116_3447_TMUAki_TMT10x_S_F8 167.12 142.96 5692100 8937500 53097 10137000 8271400 8844300 5873400 7493600 7478000 6792400 7687700 5300200 8344200 539630 10237000 7872800 9059400 6132700 7666200 7544900 6662700 7409500 7 7 4 7 7 7 7 7 7 7 7 2832800 4296900 21241 4991200 5755300 6347600 3564200 3490000 3603800 3447800 3657100 2637700 4012000 288980 5063100 5464200 6318600 3731100 3691300 3666400 3369000 3526200 3 3 2 3 3 3 3 3 3 3 3 2859300 4640700 31856 5145500 2516100 2496800 2309200 4003600 3874300 3344600 4030600 2662400 4332100 250650 5174000 2408500 2740800 2401600 3974800 3878500 3293700 3883300 4 4 2 4 4 4 4 4 4 4 4 4886800000 3557300000 1329500000 15907 934 14594 81835;81836;81837;81838;81839;81840;81841;81842 98958;98959;98960;98961;98962;98963;98964;98965;98966 98965 9 RGDQLLSVNGVSVEGEHHEK Unmodified 2189.0825 0.082507436 2955 Q9NUP9;O14910 LIN7C;LIN7A Protein lin-7 homolog C;Protein lin-7 homolog A yes no 0 0 0 1 By MS/MS By matching 5 0 2 1 1 35.646 35.714 5 7.1279E-05 9032 20211116_3433_TMUAki_TMT10x_P_F5 70.897 60.11 537530 785090 0 945820 1414700 1061800 604120 638910 652040 581940 696300 500480 733170 55183 955270 1336000 1065000 656650 669240 662810 570700 670320 1 1 0 1 1 1 1 1 1 1 1 537530 785090 0 945820 1414700 1061800 604120 638910 652040 581940 696300 500480 733170 55183 955270 1336000 1065000 656650 669240 662810 570700 670320 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 174670000 116910000 57753000 15908 2955 14595 81843;81844 98967 98967 1 RGDTVATLSER Unmodified 1203.6208 0.62076364 766 P22102 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 29.257 29.103 3 6.114E-16 8713 20211116_3441_TMUAki_TMT10x_S_F3 203.69 149.63 588570 920740 1072 840200 782030 876620 772990 533920 626080 551360 716490 547980 858850 47046 863380 749330 883100 780010 560670 646570 537770 688370 3 3 1 3 3 3 3 3 3 3 3 448790 703330 1072 634630 633040 723510 613620 406370 497680 431100 535420 417840 656020 36918 653610 606310 724460 619840 429910 512720 420020 515330 2 2 1 2 2 2 2 2 2 2 2 139780 217410 0 205570 148990 153110 159380 127550 128400 120260 181070 130140 202820 10128 209770 143020 158640 160160 130760 133850 117750 173040 1 1 0 1 1 1 1 1 1 1 1 44279000 22386000 21894000 15909 766 14596 81845;81846;81847 98968;98969;98970 98970 3 RGDTYELQVR Unmodified 1235.6258 0.62584901 2780 Q9H0U3 MAGT1 Magnesium transporter protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 31.91 31.819 3 2.0767E-08 9723 20211116_3441_TMUAki_TMT10x_S_F3 160.67 137.3 1142000 1712000 46418 1696000 1593900 1876000 1269800 1020000 1178500 1002500 1560700 1063600 1597500 144270 1734000 1522900 1880800 1302100 1079700 1216500 979810 1493700 2 2 2 2 2 2 2 2 2 2 2 816090 1220500 42917 1211400 1239100 1494100 846170 707850 851280 690290 1138900 760180 1138800 113580 1240700 1180900 1487000 879010 758840 876010 674890 1089800 1 1 1 1 1 1 1 1 1 1 1 325890 491530 3501 484650 354750 381920 423630 312120 327200 312210 421770 303460 458630 30686 493370 342090 393840 423120 320860 340450 304920 403940 1 1 1 1 1 1 1 1 1 1 1 108130000 58988000 49143000 15910 2780 14597 81848;81849;81850 98971;98972 98972 2 RGEAHLAVNDFELAR Unmodified 1696.8645 0.86451616 1497 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 4 1.13 4 6 24 4 3 1 14 28 37.249 37.288 2;3;4 5.4517E-115 10130 20211116_3431_TMUAki_TMT10x_P_F4 375.22 321.03 27700000 43151000 290930 50830000 45141000 40065000 31505000 36410000 37332000 32635000 40714000 25792000 40293000 2052000 51151000 42946000 41397000 32850000 37090000 37844000 32029000 39170000 58 58 26 58 58 58 58 58 58 58 58 12272000 18784000 167890 22679000 29092000 28002000 17196000 16475000 17185000 14867000 18374000 11427000 17542000 1206900 22940000 27599000 27939000 18064000 17284000 17525000 14586000 17688000 16 16 9 16 16 16 16 16 16 16 16 15428000 24367000 123030 28151000 16049000 12063000 14309000 19935000 20147000 17768000 22340000 14366000 22751000 845170 28211000 15347000 13458000 14786000 19807000 20319000 17443000 21483000 42 42 17 42 42 42 42 42 42 42 42 23502000000 14832000000 8670000000 15911 1497 14598 81851;81852;81853;81854;81855;81856;81857;81858;81859;81860;81861;81862;81863;81864;81865;81866;81867;81868;81869;81870;81871;81872;81873;81874;81875;81876;81877;81878;81879;81880;81881;81882;81883;81884;81885;81886;81887;81888;81889;81890;81891;81892 98973;98974;98975;98976;98977;98978;98979;98980;98981;98982;98983;98984;98985;98986;98987;98988;98989;98990;98991;98992;98993;98994;98995;98996;98997;98998;98999;99000;99001;99002;99003;99004;99005;99006;99007;99008;99009;99010;99011;99012;99013;99014;99015;99016;99017;99018;99019;99020;99021;99022;99023;99024;99025;99026;99027;99028;99029;99030;99031;99032;99033;99034;99035;99036;99037 98982 65 RGEAQLLMNEFESAK Oxidation (M) 1737.8356 0.83558379 1635 Q13451 FKBP5 Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed yes yes 0 0 1 1 By MS/MS 5 0 1 1 52.834 53.017 3 0.014347 14733 20211116_3444_TMUAki_TMT10x_S_F5 48.391 37.13 4934400 9491800 0 8875900 7455300 5333800 5062500 12259000 10705000 10593000 8927100 4594400 8854500 439440 9045400 7088000 5807800 5434900 12065000 10580000 10415000 8666700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4934400 9491800 0 8875900 7455300 5333800 5062500 12259000 10705000 10593000 8927100 4594400 8854500 439440 9045400 7088000 5807800 5434900 12065000 10580000 10415000 8666700 1 1 0 1 1 1 1 1 1 1 1 240020000 0 240020000 15912 1635 14599 81893 99038 99038 2200 1 RGEDVETSK Unmodified 1019.4884 0.48835248 296 O60869;O60869-2;O60869-3 EDF1 Endothelial differentiation-related factor 1 yes no 0 0 0 1 By MS/MS 3 0 1 1 26.89 26.597 3 0.040827 7742 20211116_3441_TMUAki_TMT10x_S_F3 51.162 20.088 118810 180040 0 146890 124380 145590 118920 92953 108210 105060 139890 110600 167870 6966.8 152170 118930 147220 120580 97528 111680 102110 133970 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 118810 180040 0 146890 124380 145590 118920 92953 108210 105060 139890 110600 167870 6966.8 152170 118930 147220 120580 97528 111680 102110 133970 1 1 0 1 1 1 1 1 1 1 1 2117800 0 2117800 15913 296 14600 81894 99039 99039 1 RGEEGHDPKEPEQLR Unmodified 1775.8551 0.85507368 1168 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 0 0 0 2 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 27.34 27.056 3;4;5 6.5627E-10 7906 20211116_3441_TMUAki_TMT10x_S_F3 136.14 116.05 251910 465360 1655.4 374150 320670 303990 322750 271240 334500 287610 367950 234570 433890 17039 387090 307600 313280 327640 277920 340970 280220 353910 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 251910 465360 1655.4 374150 320670 303990 322750 271240 334500 287610 367950 234570 433890 17039 387090 307600 313280 327640 277920 340970 280220 353910 3 3 1 3 3 3 3 3 3 3 3 19692000 0 19692000 15914 1168 14601 81895;81896;81897 99040;99041;99042;99043 99041 4 RGEIIAK Unmodified 785.47594 0.4759373 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 30.833 30.818 3 0.0085778 7015 20211116_3433_TMUAki_TMT10x_P_F5 93.162 18.053 2914600 4914600 54647 4046600 3534000 5805000 2009300 2251400 3165600 2607500 3177200 2714200 4582600 301240 4215800 3353500 5725400 2153700 2479100 3170300 2532000 3064600 2 2 2 2 2 2 2 2 2 2 2 2914600 4914600 54647 4046600 3534000 5805000 2009300 2251400 3165600 2607500 3177200 2714200 4582600 301240 4215800 3353500 5725400 2153700 2479100 3170300 2532000 3064600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 144030000 144030000 0 15915 1171 14602 81898;81899 99044;99045 99045 2 RGEIIDNDTEEEFYLR Unmodified 1997.933 0.93304923 2328 Q8WYA6;Q8WYA6-4;Q8WYA6-3;Q8WYA6-2 CTNNBL1 Beta-catenin-like protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 4 2 2 3 5 52.621 52.407 3 9.9009E-61 15243 20211116_3440_TMUAki_TMT10x_S_F2 293.77 275.4 17581000 30084000 161480 33796000 21139000 24248000 17785000 22399000 22480000 20464000 25727000 16369000 28086000 1538900 34072000 20187000 25250000 18361000 22809000 22779000 20066000 24717000 9 9 6 9 9 9 9 9 9 9 9 5980500 10817000 40523 11304000 10911000 15039000 8806600 8139300 7864000 7275600 9079500 5568300 10095000 544800 11553000 10408000 14935000 9013800 8597800 8084700 7141300 8721000 3 3 2 3 3 3 3 3 3 3 3 11600000 19267000 120950 22492000 10228000 9209400 8978300 14260000 14616000 13188000 16647000 10801000 17991000 994090 22519000 9778700 10315000 9346900 14211000 14694000 12925000 15996000 6 6 4 6 6 6 6 6 6 6 6 5157900000 2910100000 2247800000 15916 2328 14603 81900;81901;81902;81903;81904;81905;81906;81907 99046;99047;99048;99049;99050;99051;99052;99053;99054;99055 99052 10 RGEQADHFTQTPLDPGSQVLVR Unmodified 2450.2302 0.23023431 2664 Q9BTE6-2;Q9BTE6;Q9BTE6-3 AARSD1 Alanyl-tRNA editing protein Aarsd1 yes no 0 0 0 1 By matching By MS/MS 4.33 0.471 2 1 1 2 43.386 43.533 4 2.0581E-14 10927 20211116_3444_TMUAki_TMT10x_S_F5 132.65 108.37 1374000 2140600 389.37 2756500 1110800 828330 880690 1838800 2067100 1555700 2025900 1279300 1999700 109300 2739700 1059300 985490 942080 1810100 2049500 1531100 1955600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1374000 2140600 389.37 2756500 1110800 828330 880690 1838800 2067100 1555700 2025900 1279300 1999700 109300 2739700 1059300 985490 942080 1810100 2049500 1531100 1955600 2 2 1 2 2 2 2 2 2 2 2 939010000 209300000 729700000 15917 2664 14604 81908;81909;81910 99056;99057 99057 2 RGEVPAELRR Unmodified 1181.6629 0.66290322 3203 Q9UNZ2;Q9UNZ2-5;Q9UNZ2-4;Q9UNZ2-6 NSFL1C NSFL1 cofactor p47 yes no 0 0 0 2 By MS/MS 5 0 2 2 27.428 27.356 3;4 0.00059039 5650 20211116_3433_TMUAki_TMT10x_P_F5 105.13 70.326 309200 453770 9480.8 404020 418670 530470 324770 291640 290010 301430 356050 287970 423230 36004 417570 399650 527240 333260 308860 298900 293990 341420 2 2 2 2 2 2 2 2 2 2 2 309200 453770 9480.8 404020 418670 530470 324770 291640 290010 301430 356050 287970 423230 36004 417570 399650 527240 333260 308860 298900 293990 341420 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24741000 24741000 0 15918 3203 14605 81911;81912 99058;99059 99058 2 RGFAFVTFDDHDSVDK Unmodified 1854.8537 0.8536767 583 P09651;P09651-2;P09651-3;Q32P51 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 0 1 By MS/MS 7 0 1 1 52.48 53.172 4 0.00048471 16603 20211116_3435_TMUAki_TMT10x_P_F7 70.41 50.833 4941400 7703700 163970 8860900 7466100 9918000 5636500 5342600 4880300 4736000 6325100 4602100 7192700 597850 8973700 7122800 9935800 5789600 5644700 5049200 4650400 6056900 1 1 1 1 1 1 1 1 1 1 1 4941400 7703700 163970 8860900 7466100 9918000 5636500 5342600 4880300 4736000 6325100 4602100 7192700 597850 8973700 7122800 9935800 5789600 5644700 5049200 4650400 6056900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 444730000 444730000 0 15919 583 14606 81913 99060 99060 1 RGFAFVTFDDHDTVDK Unmodified 1868.8693 0.86932676 1168;1169 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 0 1 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 53.652 53.952 4 1.4579E-29 15123 20211116_3444_TMUAki_TMT10x_S_F5 195.38 159.72 33546000 51881000 815000 72910000 40111000 47483000 30788000 25136000 24839000 26895000 37123000 31240000 48489000 3632700 72515000 38275000 49438000 31533000 26737000 25965000 26195000 35431000 8 8 8 8 8 8 8 8 8 8 8 21371000 31262000 560590 45505000 29929000 38690000 20701000 15670000 15179000 16537000 22865000 19903000 29224000 2414100 45315000 28500000 39318000 21309000 17120000 15956000 16115000 21819000 5 5 5 5 5 5 5 5 5 5 5 12174000 20619000 254410 27405000 10182000 8792600 10087000 9466300 9660000 10358000 14259000 11337000 19265000 1218500 27200000 9775500 10120000 10224000 9617400 10009000 10080000 13613000 3 3 3 3 3 3 3 3 3 3 3 4829900000 1962500000 2867400000 15920 1168;1169 14607 81914;81915;81916;81917;81918;81919 99061;99062;99063;99064;99065;99066;99067;99068 99066 8 RGFCFITFKEEEPVK Unmodified 1885.9397 0.93965493 1675 Q14103;Q14103-3;Q14103-4;Q14103-2 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes no 0 0 0 2 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 57.238 57.191 4 5.5377E-30 16492 20211116_3447_TMUAki_TMT10x_S_F8 211.49 188.84 40066000 67273000 345520 61966000 56829000 52707000 44145000 53443000 47678000 51210000 55800000 37307000 62753000 3827000 63452000 54189000 54282000 45550000 54233000 48638000 50106000 53577000 5 5 4 5 5 5 5 5 5 5 5 10225000 15082000 0 12880000 13657000 22017000 11386000 11312000 10800000 10256000 12484000 9520500 14065000 844320 13431000 13034000 21625000 11650000 12009000 11072000 10060000 11990000 1 1 0 1 1 1 1 1 1 1 1 29840000 52191000 345520 49087000 43172000 30690000 32759000 42131000 36879000 40953000 43317000 27787000 48688000 2982700 50021000 41154000 32657000 33900000 42224000 37566000 40046000 41587000 4 4 4 4 4 4 4 4 4 4 4 6656400000 3674600000 2981800000 15921 1675 14608 81920;81921;81922;81923 99069;99070;99071;99072;99073 99073 5 RGFCFITYTDEEPVK Unmodified 1860.8716 0.87163495 151;152 O14979;O14979-3;O14979-2 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like no no 0 0 0 1 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 57.859 58.139 3 2.0573E-24 17166 20211116_3445_TMUAki_TMT10x_S_F6 196.18 159.23 48793000 77330000 542760 89501000 50561000 57641000 45251000 51724000 53298000 47535000 57545000 45435000 72203000 4529300 89969000 48377000 60553000 46427000 52762000 54020000 46598000 55380000 9 9 8 9 9 9 9 9 9 9 9 20899000 31936000 223170 35843000 26655000 36837000 21772000 20853000 21419000 19010000 22564000 19461000 29814000 2021300 36305000 25449000 37106000 22329000 21953000 21846000 18642000 21731000 4 4 4 4 4 4 4 4 4 4 4 27894000 45394000 319590 53657000 23906000 20805000 23479000 30871000 31879000 28525000 34981000 25974000 42389000 2508000 53664000 22928000 23447000 24098000 30809000 32174000 27955000 33649000 5 5 4 5 5 5 5 5 5 5 5 7280600000 4123400000 3157200000 15922 151;152 14609 81924;81925;81926;81927;81928;81929 99074;99075;99076;99077;99078;99079;99080;99081;99082 99080 9 RGFCFITYTDEEPVKK Unmodified 1988.9666 0.96659797 151;152 O14979;O14979-3;O14979-2 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like no no 0 0 0 2 By MS/MS By MS/MS 6.4 2.22 2 2 6 5 8 7 52.703 52.947 3;4;5 2.5862E-42 15337 20211116_3436_TMUAki_TMT10x_P_F8 222.45 174.9 221600000 365470000 2747900 359030000 281790000 387890000 230300000 306360000 258970000 270630000 293470000 206340000 341000000 21046000 367160000 269010000 391540000 237180000 314530000 263430000 265790000 282030000 17 17 12 17 17 17 17 17 17 17 17 130210000 210950000 2186800 203580000 186470000 301010000 158040000 182440000 149010000 159760000 165120000 121250000 196810000 13207000 209660000 178180000 297970000 161510000 190790000 152560000 156960000 158780000 9 9 7 9 9 9 9 9 9 9 9 91383000 154520000 561110 155450000 95319000 86880000 72265000 123920000 109970000 110880000 128360000 85088000 144190000 7839700 157500000 90830000 93570000 75674000 123740000 110870000 108830000 123250000 8 8 5 8 8 8 8 8 8 8 8 52723000000 30159000000 22564000000 15923 151;152 14610 81930;81931;81932;81933;81934;81935;81936;81937;81938;81939;81940;81941;81942;81943;81944 99083;99084;99085;99086;99087;99088;99089;99090;99091;99092;99093;99094;99095;99096;99097;99098;99099 99090 17 RGFEGSCSQK Unmodified 1154.5139 0.51385572 239 O43719 HTATSF1 HIV Tat-specific factor 1 yes yes 0 0 0 1 By MS/MS 5 0 1 1 27.945 27.873 3 0.038303 5878 20211116_3433_TMUAki_TMT10x_P_F5 51.979 32.522 90912 146430 1818.3 146300 122070 186600 98507 95483 86472 90271 104230 84661 136640 9668.2 149860 116570 185560 100780 101520 89127 88378 99995 1 1 1 1 1 1 1 1 1 1 1 90912 146430 1818.3 146300 122070 186600 98507 95483 86472 90271 104230 84661 136640 9668.2 149860 116570 185560 100780 101520 89127 88378 99995 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4072800 4072800 0 15924 239 14611 81945 99100 99100 1 RGFEVVYMTEPIDEYCVQQLK Oxidation (M) 2619.2349 0.23491026 553 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 1 1 By MS/MS By MS/MS 5.54 1.08 3 3 4 3 6 7 66.447 66.538 3;4 2.4874E-19 20593 20211116_3445_TMUAki_TMT10x_S_F6 147.25 134.19 90733000 152710000 935630 136900000 110600000 140160000 111530000 93037000 93175000 99465000 114040000 84481000 142440000 6967600 140830000 106070000 141530000 112510000 97165000 96333000 96878000 109360000 28 28 10 28 28 28 28 28 28 28 28 42666000 70085000 256240 64933000 42823000 83613000 52231000 43880000 45384000 48300000 53278000 39724000 65377000 2824500 66885000 41282000 83134000 52276000 46752000 46750000 46991000 51151000 13 13 2 13 13 13 13 13 13 13 13 48067000 82627000 679400 71972000 67776000 56547000 59295000 49157000 47792000 51165000 60761000 44757000 77060000 4143100 73946000 64788000 58392000 60233000 50413000 49584000 49887000 58212000 15 15 8 15 15 15 15 15 15 15 15 18227000000 8866900000 9360100000 15925 553 14612 81946;81947;81948;81949;81950;81951;81952;81953;81954;81955;81956;81957;81958 99101;99102;99103;99104;99105;99106;99107;99108;99109;99110;99111;99112;99113;99114;99115;99116;99117;99118;99119;99120;99121;99122;99123;99124;99125;99126;99127;99128 99122 508 28 RGFEVVYMTEPIDEYCVQQLK Unmodified 2603.24 0.23999564 553 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 1 By MS/MS By MS/MS 5.88 0.927 1 1 4 2 4 4 73.393 73.405 3;4 1.0226E-34 23434 20211116_3445_TMUAki_TMT10x_S_F6 182.82 163.44 55901000 86185000 432670 99395000 57662000 55226000 61527000 30299000 31316000 36109000 57064000 52050000 80469000 4749900 99806000 55392000 58425000 61272000 32238000 34094000 35027000 54250000 13 13 7 13 13 13 13 13 13 13 13 24362000 37090000 210650 41287000 23064000 32627000 24848000 13986000 14893000 17123000 24517000 22685000 34625000 2111400 41694000 22167000 33353000 24803000 15255000 15928000 16594000 23353000 6 6 3 6 6 6 6 6 6 6 6 31539000 49095000 222020 58108000 34597000 22599000 36679000 16313000 16423000 18986000 32547000 29366000 45845000 2638600 58112000 33225000 25071000 36469000 16983000 18166000 18432000 30898000 7 7 4 7 7 7 7 7 7 7 7 7841500000 4380200000 3461300000 15926 553 14612 81959;81960;81961;81962;81963;81964;81965;81966 99129;99130;99131;99132;99133;99134;99135;99136;99137;99138;99139;99140;99141;99142 99138 14 RGFFICDQPYEPVSPYSCK Unmodified 2349.0558 0.05582368 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 3 3 5 1 61.028 61.123 3;4 1.2951E-31 18065 20211116_3447_TMUAki_TMT10x_S_F8 191.4 175.81 23124000 37079000 265380 38093000 28104000 44651000 28258000 25359000 23263000 26495000 27770000 21532000 34603000 2224900 38888000 26967000 44650000 28500000 26791000 24045000 25830000 26649000 7 7 6 7 7 7 7 7 7 7 7 19024000 29961000 248560 30953000 21984000 40082000 23448000 20373000 19221000 21288000 22413000 17715000 27960000 1841000 31644000 21130000 39827000 23577000 21736000 19852000 20753000 21523000 5 5 4 5 5 5 5 5 5 5 5 4100000 7118700 16826 7140300 6120800 4569000 4809800 4986800 4042500 5206700 5356800 3817600 6642600 383900 7244300 5836900 4822600 4923500 5055700 4192800 5076100 5126900 2 2 2 2 2 2 2 2 2 2 2 4172200000 2617200000 1555000000 15927 542 14613 81967;81968;81969;81970;81971;81972 99143;99144;99145;99146;99147;99148;99149;99150;99151 99150 9 RGFGFGGFAISAGK Unmodified 1370.7095 0.70951906 2125 Q86XP3 DDX42 ATP-dependent RNA helicase DDX42 yes yes 0 0 0 1 By matching By MS/MS 6 0 2 1 1 58.583 58.632 3 4.283E-09 17388 20211116_3445_TMUAki_TMT10x_S_F6 124.51 96.188 7339700 13839000 77186 12645000 7819500 7040000 7635000 8962000 8084100 8603100 9692200 6834500 12908000 687160 12900000 7497700 7560800 7768100 9004200 8261600 8417000 9300000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7339700 13839000 77186 12645000 7819500 7040000 7635000 8962000 8084100 8603100 9692200 6834500 12908000 687160 12900000 7497700 7560800 7768100 9004200 8261600 8417000 9300000 2 2 2 2 2 2 2 2 2 2 2 1251900000 282000000 969850000 15928 2125 14614 81973;81974 99152;99153 99152 2 RGFGFVEFEDPRDADDAVYELDGK Unmodified 2746.2511 0.25108891 1612 Q13243;Q13243-2 SRSF5 Serine/arginine-rich splicing factor 5 yes no 0 0 0 2 By MS/MS 2 0 1 1 73.037 72.813 4 4.8935E-22 24877 20211116_3429_TMUAki_TMT10x_P_F2 143.47 128.86 4264900 6931300 19599 6778000 3749900 6237400 4486800 3464300 3897200 3968100 4780100 3971200 6467100 364640 6917400 3615300 6325300 4494400 3677300 4021900 3854700 4583900 1 1 1 1 1 1 1 1 1 1 1 4264900 6931300 19599 6778000 3749900 6237400 4486800 3464300 3897200 3968100 4780100 3971200 6467100 364640 6917400 3615300 6325300 4494400 3677300 4021900 3854700 4583900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1368700000 1368700000 0 15929 1612 14615 81975 99154 99154 1 RGFGFVTFDDHDPVDK Unmodified 1850.8588 0.85876208 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 1 By MS/MS By MS/MS 5.4 1.31 1 3 4 4 2 1 8 7 54.657 54.816 3;4 5.1343E-22 16528 20211116_3433_TMUAki_TMT10x_P_F5 154.69 137.41 201690000 306110000 2419900 403770000 205390000 214130000 184130000 147850000 151720000 159560000 209690000 187810000 286000000 16617000 402180000 196520000 228350000 186880000 154020000 157830000 155350000 200480000 26 26 18 26 26 26 26 26 26 26 26 95457000 134820000 1110400 181180000 112900000 143280000 94631000 69976000 69476000 75912000 98060000 88885000 125980000 8807900 181000000 107840000 146660000 96165000 75024000 72795000 73895000 93710000 13 13 9 13 13 13 13 13 13 13 13 106230000 171290000 1309500 222590000 92488000 70849000 89498000 77873000 82248000 83650000 111630000 98923000 160020000 7809400 221180000 88685000 81694000 90713000 78994000 85033000 81459000 106780000 13 13 9 13 13 13 13 13 13 13 13 35113000000 17993000000 17121000000 15930 772 14616 81976;81977;81978;81979;81980;81981;81982;81983;81984;81985;81986;81987;81988;81989;81990 99155;99156;99157;99158;99159;99160;99161;99162;99163;99164;99165;99166;99167;99168;99169;99170;99171;99172;99173;99174;99175;99176;99177;99178;99179;99180;99181;99182 99164 28 RGFGFVTFDDHDPVDKIVLQK Unmodified 2432.2488 0.24884448 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 2 By MS/MS By MS/MS 6.5 2.5 1 2 3 3 3 67.257 67.395 4;5 3.5614E-26 20638 20211116_3447_TMUAki_TMT10x_S_F8 166.47 151.78 62494000 121090000 397310 62375000 132090000 170030000 96719000 179710000 141600000 157030000 124860000 58189000 112770000 6306300 69389000 125770000 166800000 101340000 181550000 141490000 154300000 120970000 10 10 6 10 10 10 10 10 10 10 10 32415000 56968000 192300 38016000 48089000 103790000 56519000 74999000 61864000 67590000 56601000 30182000 53087000 2897200 41104000 46321000 101030000 57054000 77485000 62515000 66317000 54764000 5 5 2 5 5 5 5 5 5 5 5 30078000 64118000 205000 24359000 83998000 66246000 40200000 104710000 79735000 89444000 68260000 28007000 59680000 3409100 28285000 79450000 65768000 44290000 104070000 78980000 87984000 66203000 5 5 4 5 5 5 5 5 5 5 5 18258000000 10438000000 7819300000 15931 772 14617 81991;81992;81993;81994;81995;81996 99183;99184;99185;99186;99187;99188;99189;99190;99191;99192 99189 10 RGFGFVYFQNHDAADK Unmodified 1870.8751 0.87508084 1601 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 0 0 0 1 By MS/MS By MS/MS 5.12 3.22 3 2 3 5 3 48.763 48.893 3;4 3.5497E-29 13691 20211116_3436_TMUAki_TMT10x_P_F8 192.32 166.17 65330000 108370000 819300 131310000 90342000 99687000 69170000 74559000 69342000 69312000 80153000 60834000 101210000 6454400 131860000 86137000 102940000 71275000 76918000 70919000 67910000 76986000 14 14 11 14 14 14 14 14 14 14 14 30469000 50771000 227420 60976000 55535000 74652000 40340000 37977000 35829000 35789000 37196000 28370000 47413000 3014300 61689000 52876000 74383000 41574000 40398000 36696000 35044000 35839000 8 8 6 8 8 8 8 8 8 8 8 34861000 57598000 591880 70334000 34808000 25035000 28830000 36582000 33513000 33523000 42957000 32463000 53793000 3440100 70175000 33261000 28558000 29701000 36520000 34223000 32866000 41147000 6 6 5 6 6 6 6 6 6 6 6 14938000000 8886800000 6050900000 15932 1601 14618 81997;81998;81999;82000;82001;82002;82003;82004 99193;99194;99195;99196;99197;99198;99199;99200;99201;99202;99203;99204;99205;99206;99207 99201 15 RGFGIAVSGGR Unmodified 1075.5887 0.58867565 3098 Q9UDY2;Q9UDY2-2;Q9UDY2-5;Q9UDY2-4;Q9UDY2-6;Q9UDY2-3;Q9UDY2-7 TJP2 Tight junction protein ZO-2 yes no 0 0 0 1 By MS/MS 5 0 1 1 31.775 31.926 3 0.00049408 6307 20211116_3444_TMUAki_TMT10x_S_F5 82.437 50.677 88388 147420 2044.2 176090 87930 82335 104400 79557 77261 97022 112660 82313 137670 9226.6 176210 84849 89598 104200 81551 81044 94038 107590 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 88388 147420 2044.2 176090 87930 82335 104400 79557 77261 97022 112660 82313 137670 9226.6 176210 84849 89598 104200 81551 81044 94038 107590 1 1 1 1 1 1 1 1 1 1 1 2939400 0 2939400 15933 3098 14619 82005 99208 99208 1 RGFVFITFKEEEPVK Unmodified 1824.9774 0.97742065 2601 Q99729-3;Q99729-2;Q99729;Q99729-4 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 0 0 0 2 By MS/MS 1 0 1 1 60.386 60.092 4 2.9391E-19 20197 20211116_3439_TMUAki_TMT10x_S_F1 169.92 148.05 2438600 4157400 0 3400000 2394500 2520500 2693600 3141700 3348600 3218700 3109700 2270400 3876500 179660 3508900 2302000 2635900 2736800 3165300 3369500 3140400 3007200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2438600 4157400 0 3400000 2394500 2520500 2693600 3141700 3348600 3218700 3109700 2270400 3876500 179660 3508900 2302000 2635900 2736800 3165300 3369500 3140400 3007200 1 1 0 1 1 1 1 1 1 1 1 328160000 0 328160000 15934 2601 14620 82006 99209 99209 1 RGFVLQDTVEQLR Unmodified 1559.842 0.8419898 1254 P56192;P56192-2 MARS Methionine--tRNA ligase, cytoplasmic yes no 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 1 3 50.955 51.261 2;3 1.3996E-42 16390 20211116_3446_TMUAki_TMT10x_S_F7 282.61 231.2 16281000 25945000 35658 30442000 19725000 18049000 13996000 19000000 17407000 17652000 20997000 15158000 24227000 1261000 30553000 18760000 19173000 14602000 19230000 17687000 17296000 20144000 4 4 2 4 4 4 4 4 4 4 4 3434000 4965900 8103.2 6236800 6746800 7877300 4159300 3882300 3783400 3627400 4309200 3197400 4638500 338650 6297300 6404600 7833900 4342700 4141200 3884100 3553200 4140700 1 1 1 1 1 1 1 1 1 1 1 12847000 20979000 27555 24205000 12978000 10172000 9836700 15118000 13624000 14025000 16688000 11961000 19588000 922380 24256000 12356000 11339000 10259000 15088000 13803000 13743000 16004000 3 3 1 3 3 3 3 3 3 3 3 2304000000 431220000 1872800000 15935 1254 14621 82007;82008;82009;82010 99210;99211;99212;99213 99213 4 RGGFDATDDACMELR Oxidation (M) 1728.7196 0.71956776 2929 Q9NRL2;Q9NRL2-2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 0 0 1 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 35.927 35.695 3 0.00073017 9790 20211116_3429_TMUAki_TMT10x_P_F2 70.259 58.282 597030 877540 11598 1181500 1067300 1088500 672410 786110 880670 703790 869250 555980 819970 66893 1182400 1014100 1107800 709150 812060 886410 690750 838890 2 2 2 2 2 2 2 2 2 2 2 349610 523930 3580.3 670620 842600 868470 476430 475380 520280 416840 520250 325550 489430 39227 676740 798930 863700 503770 501420 527380 409520 501870 1 1 1 1 1 1 1 1 1 1 1 247420 353610 8017.7 510840 224690 220050 195980 310740 360390 286950 349000 230430 330550 27667 505690 215210 244150 205380 310650 359030 281230 337020 1 1 1 1 1 1 1 1 1 1 1 50079000 28110000 21969000 15936 2929 14622 82011;82012 99214;99215 99214 3026 2 RGGFNTFR Unmodified 953.48315 0.48314794 710 P17844;P17844-2 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 30.234 30.122 3 0.015675 9110 20211116_3441_TMUAki_TMT10x_S_F3 64.485 45.39 2617200 3832000 11610 3388000 2309800 3252300 1776700 1863200 1783300 1637300 2751500 2437000 3574000 223500 3485600 2202000 3290300 1830200 1957700 1848300 1608400 2624300 2 2 2 2 2 2 2 2 2 2 2 1652600 2358400 9284.9 2017300 1355000 2035800 627100 1111400 1118500 1049000 1646000 1538800 2199400 141500 2082400 1281500 2052000 689370 1174800 1135100 1027100 1571500 1 1 1 1 1 1 1 1 1 1 1 964610 1473500 2325.4 1370700 954810 1216400 1149600 751820 664810 588360 1105500 898170 1374600 82003 1403300 920550 1238300 1140900 782950 713180 581360 1052800 1 1 1 1 1 1 1 1 1 1 1 66797000 21770000 45027000 15937 710 14623 82013;82014 99216;99217 99217 2 RGGGGGFGYQK Unmodified 1082.5257 0.52574104 2976 Q9NVP1 DDX18 ATP-dependent RNA helicase DDX18 yes yes 0 0 0 1 By MS/MS 1 0 1 1 30.767 30.767 3 0.080963 6307 20211116_3428_TMUAki_TMT10x_P_F1 41.824 13.081 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15938 2976 14624 82015 99218 99218 1 RGGGGTELGPPAPPRPR Unmodified 1670.8965 0.89648499 2057 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme yes yes 0 0 0 2 By MS/MS By MS/MS 1.2 0.4 4 1 3 2 29.092 29.077 3;4 6.0139E-16 5588 20211116_3428_TMUAki_TMT10x_P_F1 158.29 145.66 479850 797310 11745 776560 693910 641290 561300 419690 487850 424000 624480 446860 743900 52105 791660 662630 656660 574010 438020 504370 413920 598180 6 6 4 6 6 6 6 6 6 6 6 233380 384020 8985.6 387400 419470 433160 292750 218390 253980 222800 305890 217360 358340 29536 395650 399510 433620 302370 233020 261920 217420 293470 3 3 2 3 3 3 3 3 3 3 3 246470 413290 2759.7 389160 274450 208130 268550 201300 233880 201200 318590 229510 385560 22569 396010 263120 223040 271640 205010 242450 196510 304710 3 3 2 3 3 3 3 3 3 3 3 97548000 68517000 29031000 15939 2057 14625 82016;82017;82018;82019;82020 99219;99220;99221;99222;99223;99224 99219 6 RGGMIVDPLR Unmodified 1112.6124 0.61244756 2337 Q92530 PSMF1 Proteasome inhibitor PI31 subunit yes yes 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 37.918 38.301 3 0.088561 9277 20211116_3436_TMUAki_TMT10x_P_F8 39.413 3.0313 8453200 13463000 0 12652000 8610800 10589000 7481400 8524300 8711100 8490200 9486700 7869900 12559000 592960 12934000 8220900 10868000 7685800 8770100 8835700 8293300 9127400 3 3 0 3 3 3 3 3 3 3 3 3768400 5988200 0 5505300 4529900 7002800 3543000 3701500 3739600 3942800 4195300 3508300 5585800 276760 5672800 4315700 6967400 3651500 3937300 3811900 3840800 4032900 2 2 0 2 2 2 2 2 2 2 2 4684900 7474300 0 7146800 4080900 3586000 3938300 4822800 4971500 4547400 5291400 4361600 6973100 316200 7260800 3905200 3900600 4034300 4832800 5023800 4452600 5094500 1 1 0 1 1 1 1 1 1 1 1 55846000 37568000 18278000 15940 2337 14626 82021;82022;82023 99225 99225 1 RGGNRFEPYANPTK Unmodified 1605.8012 0.80118762 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 2 By MS/MS By MS/MS 1.14 0.35 6 1 3 4 31.538 31.513 3;4 1.8024E-19 8526 20211116_3439_TMUAki_TMT10x_S_F1 150.05 123.02 7999200 11679000 21928 19174000 25133000 14758000 9910800 10702000 14044000 6856900 13257000 7447900 10926000 884770 18966000 23715000 15215000 10977000 10971000 14079000 6855200 12813000 6 6 3 6 6 6 6 6 6 6 6 4713100 6738100 10252 10581000 23034000 13195000 7095700 8860400 9937500 5008800 7839900 4388200 6301800 621570 10562000 21683000 13184000 8118800 9112100 9910900 5050500 7627800 4 4 2 4 4 4 4 4 4 4 4 3286100 4941100 11676 8593000 2099600 1562600 2815100 1841500 4106800 1848100 5417100 3059800 4624200 263200 8403200 2031600 2031800 2858100 1858400 4168000 1804700 5185100 2 2 1 2 2 2 2 2 2 2 2 2680200000 1840200000 840060000 15941 1171 14627 82024;82025;82026;82027;82028;82029;82030 99226;99227;99228;99229;99230;99231;99232;99233 99232 8 RGGPGGGMDVEQQEEEDNDEEAAAGSR Oxidation (M) 2805.138 0.137986 2477 Q96GS4 C17orf59 Uncharacterized protein C17orf59 yes yes 0 0 1 1 By MS/MS 1 0 1 1 30.163 30.163 3 1.9838E-28 6068 20211116_3428_TMUAki_TMT10x_P_F1 162.22 159.07 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15942 2477 14628 82031 99234 99234 2771 1 RGGPNYQEGLR Unmodified 1245.6214 0.62143234 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 1 By MS/MS 4.67 0.471 1 2 3 27.646 27.614 2;3 1.7106E-15 5795 20211116_3433_TMUAki_TMT10x_P_F5 198.4 166.42 302730 462200 3147.7 439980 633270 510730 346830 292810 331320 296020 430240 281890 431200 31934 451480 600150 511030 366300 308810 341250 288980 411970 3 3 2 3 3 3 3 3 3 3 3 302730 462200 3147.7 439980 633270 510730 346830 292810 331320 296020 430240 281890 431200 31934 451480 600150 511030 366300 308810 341250 288980 411970 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 52391000 52391000 0 15943 1200 14629 82032;82033;82034 99235;99236;99237 99236 3 RGGPPFAFVEFEDPRDAEDAVYGR Unmodified 2696.2619 0.26192836 1543 Q07955;Q07955-3;Q07955-2 SRSF1 Serine/arginine-rich splicing factor 1 yes no 0 0 0 2 By MS/MS By MS/MS 4 1.41 2 2 2 2 2 5 5 67.835 67.704 4 8.4073E-23 23354 20211116_3430_TMUAki_TMT10x_P_F3 157.53 143.52 93593000 157320000 1341000 142040000 120940000 164510000 116410000 140470000 116480000 126550000 130030000 87152000 146740000 9028700 146320000 115910000 165670000 118320000 143610000 118970000 124170000 125020000 30 30 23 30 30 30 30 30 30 30 30 51230000 83746000 771520 78905000 63430000 115470000 66562000 75815000 65054000 67336000 69773000 47704000 78126000 4995300 81385000 60936000 114490000 67306000 78831000 66415000 66114000 67162000 16 16 12 16 16 16 16 16 16 16 16 42364000 73573000 569480 63134000 57513000 49041000 49849000 64650000 51423000 59218000 60261000 39447000 68612000 4033400 64934000 54974000 51180000 51013000 64782000 52559000 58059000 57858000 14 14 11 14 14 14 14 14 14 14 14 13197000000 6659400000 6537400000 15944 1543 14630 82035;82036;82037;82038;82039;82040;82041;82042;82043;82044 99238;99239;99240;99241;99242;99243;99244;99245;99246;99247;99248;99249;99250;99251;99252;99253;99254;99255;99256;99257;99258;99259;99260;99261;99262;99263;99264;99265;99266;99267 99241 30 RGHVFEESQVAGTPMFVVK Oxidation (M) 2133.0677 0.067708995 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 1 1 By MS/MS By MS/MS 7.2 0.748 1 2 2 2 3 46.109 46.358 4 6.4102E-24 12673 20211116_3436_TMUAki_TMT10x_P_F8 168.69 150.32 25126000 41459000 337080 45642000 31151000 44798000 25498000 29891000 32581000 29345000 31594000 23394000 38701000 2131900 46254000 29724000 45354000 26378000 31127000 32800000 28682000 30508000 8 8 6 8 8 8 8 8 8 8 8 16417000 26910000 319020 30297000 23756000 38124000 18948000 19703000 20222000 18820000 19292000 15287000 25123000 1597200 30786000 22666000 37942000 19511000 20936000 20484000 18417000 18639000 5 5 4 5 5 5 5 5 5 5 5 8708100 14549000 18062 15345000 7395000 6673900 6549400 10188000 12358000 10526000 12303000 8106700 13579000 534680 15468000 7058400 7412700 6867400 10191000 12316000 10266000 11870000 3 3 2 3 3 3 3 3 3 3 3 3817600000 1901200000 1916400000 15945 653 14631 82045;82046;82047;82048;82049 99268;99269;99270;99271;99272;99273;99274;99275 99271 707 8 RGHVFEESQVAGTPMFVVK Unmodified 2117.0728 0.072794373 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 51.342 51.633 4 1.4588E-08 14272 20211116_3447_TMUAki_TMT10x_S_F8 111.59 83.945 39767000 66948000 681190 75120000 74124000 80667000 48903000 58296000 56861000 47426000 57447000 37032000 62500000 4381500 76140000 70478000 81333000 51169000 60075000 57518000 46766000 55399000 6 6 5 6 6 6 6 6 6 6 6 29582000 48560000 474370 56519000 63190000 71238000 41040000 41152000 40352000 34126000 41955000 27547000 45342000 3333900 57317000 60060000 70988000 42766000 43149000 41138000 33619000 40423000 3 3 2 3 3 3 3 3 3 3 3 10185000 18388000 206820 18601000 10933000 9429100 7862800 17144000 16509000 13299000 15492000 9485000 17158000 1047700 18824000 10419000 10345000 8403800 16926000 16380000 13147000 14976000 3 3 3 3 3 3 3 3 3 3 3 3371200000 1665600000 1705600000 15946 653 14631 82050;82051;82052;82053 99276;99277;99278;99279;99280;99281 99280 6 RGIEKPPFELPDFIK Unmodified 1784.9825 0.98250603 1633 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 0 2 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 65.994 65.884 4 2.854E-14 22576 20211116_3439_TMUAki_TMT10x_S_F1 153.24 113.12 58369000 85206000 636480 103200000 46465000 48626000 52690000 27809000 35873000 36447000 53877000 54352000 79574000 5265700 103200000 44748000 52435000 52599000 29583000 37869000 35240000 51416000 8 8 8 8 8 8 8 8 8 8 8 15880000 22368000 271210 27326000 14422000 20008000 13964000 8773700 10751000 10345000 14484000 14788000 20890000 1548900 27418000 13834000 20581000 14089000 9534500 11211000 10038000 13857000 3 3 3 3 3 3 3 3 3 3 3 42489000 62839000 365270 75879000 32043000 28618000 38726000 19035000 25122000 26102000 39393000 39565000 58684000 3716800 75781000 30914000 31854000 38511000 20049000 26659000 25202000 37560000 5 5 5 5 5 5 5 5 5 5 5 7949700000 4673700000 3276000000 15947 1633 14632 82054;82055;82056;82057;82058;82059 99282;99283;99284;99285;99286;99287;99288;99289 99286 8 RGILTLK Unmodified 799.52797 0.52797287 1276;1406;1414;595 P60709;Q6S8J3;A5A3E0;P0CG38;P63261;P68133;P68032;P62736;P63267;P0CG39 ACTB;POTEE;POTEF;POTEI;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2;POTEJ Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle;POTE ankyrin domain family member J no no 0 0 0 1 By MS/MS By MS/MS 4.19 2.01 2 3 3 4 4 2 1 2 10 11 40.282 40.303 2;3 0.0012993 10157 20211116_3428_TMUAki_TMT10x_P_F1 127.56 50.507 82771000 131730000 619400 124830000 103430000 116150000 57595000 53073000 67526000 59145000 91274000 77071000 122900000 7256700 126230000 98018000 116830000 61125000 57237000 69104000 57514000 87314000 22 22 16 21 20 21 22 21 22 22 22 55659000 86162000 299190 75718000 83051000 100390000 37957000 35812000 44688000 38864000 60211000 51825000 80359000 5091400 76877000 78479000 99297000 41068000 39761000 45718000 37831000 57603000 11 11 7 10 10 11 11 11 11 11 11 27112000 45573000 320210 49109000 20381000 15758000 19637000 17261000 22838000 20280000 31063000 25246000 42538000 2165200 49351000 19538000 17532000 20057000 17476000 23386000 19682000 29711000 11 11 9 11 10 10 11 10 11 11 11 26512000000 16250000000 10262000000 15948 1276;1406;1414;595 14633 82060;82061;82062;82063;82064;82065;82066;82067;82068;82069;82070;82071;82072;82073;82074;82075;82076;82077;82078;82079;82080 99290;99291;99292;99293;99294;99295;99296;99297;99298;99299;99300;99301;99302;99303;99304;99305;99306;99307;99308;99309;99310;99311;99312;99313 99290 24 RGIPPEEPGAPPR Unmodified 1371.7259 0.72589741 1077 P48634;P48634-2;P48634-3 PRRC2A Protein PRRC2A yes no 0 0 0 1 By MS/MS 3 0 1 1 30.017 29.754 3 0.080027 8961 20211116_3441_TMUAki_TMT10x_S_F3 39.033 22.459 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15949 1077 14634 82081 99314 99314 1 RGITNLCVIGGDGSLTGADTFR Unmodified 2279.1328 0.13282845 552 P08237;P08237-3;P08237-2 PFKM ATP-dependent 6-phosphofructokinase, muscle type yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 59.926 60.02 3 4.6856E-14 17662 20211116_3447_TMUAki_TMT10x_S_F8 127.08 117.17 5502300 11058000 110030 10045000 8874700 12072000 8463300 9705200 7329900 8121900 8202200 5124000 10314000 359230 10349000 8505800 12120000 8571200 9939600 7537400 7997500 7885400 2 2 1 2 2 2 2 2 2 2 2 2562300 5562700 0 5200100 5010800 9078200 5688100 4863500 3479100 3902100 4024500 2385700 5189300 0 5388600 4821600 8914300 5665900 5128800 3655400 3850600 3865400 1 1 0 1 1 1 1 1 1 1 1 2940000 5495100 110030 4844900 3863800 2993900 2775300 4841600 3850700 4219800 4177700 2738300 5125100 359230 4960900 3684100 3205700 2905300 4810800 3882000 4146900 4020000 1 1 1 1 1 1 1 1 1 1 1 2031800000 1131300000 900530000 15950 552 14635 82082;82083 99315;99316 99316 2 RGLAVNMVDSK Unmodified 1188.6285 0.62849155 2959 Q9NUU7;Q9UMR2;Q9UMR2-2;Q9UMR2-4;Q9NUU7-2;Q9UMR2-3 DDX19A;DDX19B ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 38.542 38.841 3 0.011079 9001 20211116_3447_TMUAki_TMT10x_S_F8 61.194 31.21 763770 1228500 10926 1534500 1394900 1091800 875770 876340 914680 726620 1054300 711230 1147500 82344 1537200 1325100 1134800 916680 897400 933780 715820 1012800 2 2 2 2 2 2 2 2 2 2 2 402350 626020 3063 776930 1053100 831420 534560 436000 485750 388940 553410 374650 584710 45327 782750 996940 834750 567830 461840 498700 381790 531760 1 1 1 1 1 1 1 1 1 1 1 361420 602520 7863.2 757610 341750 260420 341210 440340 428940 337680 500940 336570 562800 37017 754500 328150 300010 348840 435560 435080 334030 481010 1 1 1 1 1 1 1 1 1 1 1 23277000 14306000 8970900 15951 2959 14636 82084;82085 99317;99318 99318 2 RGLDDDRGPWR Unmodified 1341.6538 0.6537951 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 2 By MS/MS 4.5 0.5 1 1 2 31.263 31.248 4 0.00050579 6861 20211116_3431_TMUAki_TMT10x_P_F4 85.924 76.491 2912200 4800000 0 4734500 1186300 2573200 933290 738550 833930 968010 2023800 2711100 4478700 41565 4802200 1127400 2713500 956830 850370 894950 935950 1915500 2 2 0 2 2 2 2 2 2 2 2 2912200 4800000 0 4734500 1186300 2573200 933290 738550 833930 968010 2023800 2711100 4478700 41565 4802200 1127400 2713500 956830 850370 894950 935950 1915500 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 41178000 41178000 0 15952 1684 14637 82086;82087 99319;99320 99319 2 RGLESDVAELR Unmodified 1243.6521 0.65206377 1505 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 36.935 36.865 3 5.6381E-08 11962 20211116_3441_TMUAki_TMT10x_S_F3 120.84 69.888 3414500 4481400 173100 5259800 6130100 5108200 3618800 3268300 3319400 2884700 4945800 3180600 4184500 482450 5308600 5825200 5171900 3792700 3404300 3447700 2833200 4720700 4 4 4 4 4 4 4 4 4 4 4 3033000 3892100 157450 4498700 5780100 4822600 3259200 2903900 2944400 2532400 4422700 2825200 3634000 436670 4551500 5488400 4849900 3428000 3038200 3061700 2488600 4220600 2 2 2 2 2 2 2 2 2 2 2 381520 589280 15651 761080 350020 285610 359590 364410 374920 352270 523130 355350 550510 45775 757190 336800 322060 364720 366160 386010 344550 500050 2 2 2 2 2 2 2 2 2 2 2 176920000 150140000 26782000 15953 1505 14638 82088;82089;82090;82091 99321;99322;99323;99324;99325;99326 99326 6 RGLGAGAGAGEESPATSLPR Unmodified 1852.9391 0.93913766 172 O15173;O15173-2 PGRMC2 Membrane-associated progesterone receptor component 2 yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 34.538 34.59 3 7.0536E-65 7130 20211116_3444_TMUAki_TMT10x_S_F5 274.59 245.61 1014700 1572300 7646.1 1939900 2764400 2513500 1444500 1617200 1884500 1319900 1603800 944630 1468500 93003 1961600 2616400 2505100 1547800 1680600 1888000 1301400 1555800 5 5 2 5 5 5 5 5 5 5 5 862150 1293100 5267.9 1588500 2604800 2381500 1311300 1386400 1616500 1112500 1322700 802630 1207700 81530 1611600 2464200 2354800 1407200 1451600 1620700 1097800 1285100 3 3 1 3 3 3 3 3 3 3 3 152520 279190 2378.2 351370 159540 132010 133130 230780 268060 207420 281030 142000 260780 11473 350070 152230 150230 140600 228960 267260 203540 270700 2 2 1 2 2 2 2 2 2 2 2 407660000 365140000 42520000 15954 172 14639 82092;82093;82094 99327;99328;99329;99330;99331 99330 5 RGLKPSCTIIPLMK Oxidation (M) 1628.9106 0.91060341 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 1 2 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 45.6 45.727 4 0.017531 11727 20211116_3434_TMUAki_TMT10x_P_F6 51.939 25.815 12427000 19509000 298060 24780000 23731000 23198000 16254000 13385000 12349000 11305000 15912000 11572000 18223000 1333500 24883000 22576000 23509000 16757000 14042000 12861000 11127000 15239000 4 4 3 4 4 4 4 4 4 4 4 9790800 15253000 298060 19769000 21385000 21465000 14222000 10139000 9521300 8993900 12403000 9118400 14249000 1251900 19874000 20343000 21508000 14655000 10846000 9994200 8831100 11875000 3 3 3 3 3 3 3 3 3 3 3 2636100 4255900 0 5010400 2346300 1732900 2032400 3246300 2828100 2310900 3509000 2453400 3974000 81594 5009100 2233200 2001500 2102600 3196200 2866400 2295500 3363900 1 1 0 1 1 1 1 1 1 1 1 1076200000 701900000 374300000 15955 1092 14640 82095;82096;82097 99332;99333;99334;99335 99334 1425 4 RGLSNPNELQAAIDSNRR Unmodified 2010.0355 0.035497664 2611 Q99856 ARID3A AT-rich interactive domain-containing protein 3A yes yes 0 0 0 2 By MS/MS By MS/MS 1 0 2 1 1 37.254 37.211 4 1.8831E-17 10846 20211116_3439_TMUAki_TMT10x_S_F1 154.56 138.19 1543600 2423000 82388 3143200 2156900 2111700 1610400 2310700 2481400 1915200 2547100 1437900 2263600 213350 3140300 2059300 2219300 1689100 2327500 2488600 1886800 2455100 3 3 3 3 3 3 3 3 3 3 3 484770 751890 36669 980540 1305300 1105100 670160 700530 664860 601280 768450 451640 702450 85857 986020 1237800 1109000 712820 729700 680290 591330 738090 1 1 1 1 1 1 1 1 1 1 1 1058800 1671100 45719 2162600 851610 1006600 940260 1610100 1816600 1314000 1778700 986210 1561200 127490 2154200 821560 1110300 976240 1597800 1808400 1295500 1717000 2 2 2 2 2 2 2 2 2 2 2 180820000 97725000 83092000 15956 2611 14641 82098;82099 99336;99337;99338 99337 3 RGNGLIK Unmodified 756.46062 0.46062159 1340 P62249 RPS16 40S ribosomal protein S16 yes yes 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 29.809 29.702 3 0.0031689 7421 20211116_3429_TMUAki_TMT10x_P_F2 107.67 54.99 2959700 4704700 2756.3 3639100 3089100 3782800 3201300 1763800 2064700 2108900 3103300 2755400 4386000 196340 3789900 2961500 3799500 3206200 1905500 2187000 2045500 2961500 3 3 1 3 3 3 3 3 3 3 3 1657600 2596800 2756.3 2062400 1737500 2455800 1626700 1022700 1233900 1263900 1750500 1543200 2421100 115710 2147600 1661700 2445400 1643700 1119400 1290800 1224500 1672600 2 2 1 2 2 2 2 2 2 2 2 1302100 2107900 0 1576700 1351600 1327000 1574600 741090 830750 845000 1352800 1212100 1964900 80620 1642300 1299700 1354100 1562500 786170 896220 820990 1288800 1 1 0 1 1 1 1 1 1 1 1 59444000 40865000 18579000 15957 1340 14642 82100;82101;82102;82103 99339;99340;99341 99340 3 RGPAEESSSWR Unmodified 1260.5847 0.58471248 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 27.982 27.865 3 1.4386E-06 5468 20211116_3431_TMUAki_TMT10x_P_F4 126.83 105.06 217110 348500 3182.9 310700 302720 313300 262990 274550 268730 236010 326140 202180 325050 21794 319670 289430 318140 269020 279940 275180 232080 312840 2 2 1 2 2 2 2 2 2 2 2 120740 176450 0 141450 192210 227560 141930 146990 145060 140990 179190 112420 164520 10639 148060 183010 224700 146690 153330 148640 137950 171800 1 1 0 1 1 1 1 1 1 1 1 96376 172050 3182.9 169250 110510 85739 121060 127560 123680 95014 146950 89759 160530 11155 171620 106420 93436 122330 126610 126530 94137 141040 1 1 1 1 1 1 1 1 1 1 1 6675900 3430500 3245400 15958 1684 14643 82104;82105 99342;99343 99342 2 RGPCIIYNEDNGIIK Unmodified 1760.888 0.88795372 953 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 0 1 By MS/MS By MS/MS 6 0.707 2 4 2 5 3 48.67 48.93 2;3;4 4.6631E-58 13026 20211116_3434_TMUAki_TMT10x_P_F6 273.44 224.14 66342000 107510000 752130 123060000 103020000 119170000 75192000 82680000 65479000 72929000 85839000 61774000 100370000 6335500 124380000 98102000 120820000 77425000 85613000 67762000 71628000 82176000 11 11 9 11 11 11 11 11 11 11 11 46773000 73550000 417730 83895000 88005000 106000000 62602000 58085000 45873000 51063000 59591000 43550000 68669000 4465100 85186000 83746000 105540000 64311000 61264000 47887000 50161000 57061000 8 8 6 8 8 8 8 8 8 8 8 19569000 33958000 334400 39160000 15015000 13174000 12590000 24595000 19607000 21865000 26249000 18224000 31706000 1870300 39194000 14356000 15280000 13115000 24349000 19875000 21467000 25115000 3 3 3 3 3 3 3 3 3 3 3 19675000000 11149000000 8526000000 15959 953 14644 82106;82107;82108;82109;82110;82111;82112;82113 99344;99345;99346;99347;99348;99349;99350;99351;99352;99353;99354;99355 99350 12 RGPEEDRFSR Unmodified 1247.6007 0.6006969 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 2 By MS/MS 3 0 1 1 25.663 25.362 4 0.00029342 7252 20211116_3441_TMUAki_TMT10x_S_F3 111.86 87.064 124790 212930 5049.5 176010 149900 141410 165460 207020 120910 106430 141570 116230 198550 15404 181650 144430 147670 165640 204160 125680 108090 135920 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 124790 212930 5049.5 176010 149900 141410 165460 207020 120910 106430 141570 116230 198550 15404 181650 144430 147670 165640 204160 125680 108090 135920 2 2 2 2 2 2 2 2 2 2 2 5260300 0 5260300 15960 1684 14645 82114 99356;99357 99356 2 RGPFELEAFYSDPQGVPYPEAK Unmodified 2496.1961 0.19614021 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 1 By MS/MS By MS/MS 5.59 1.33 1 3 4 4 4 1 10 7 71.217 71.272 3;4 3.7234E-35 23587 20211116_3442_TMUAki_TMT10x_S_F4 187.43 173.01 124540000 203070000 1602700 191160000 135370000 187870000 149740000 124940000 122550000 134060000 154160000 115960000 189440000 11268000 195800000 130210000 190170000 150300000 130480000 126980000 130560000 147740000 34 34 23 34 34 34 34 34 34 34 34 78815000 123880000 886290 117470000 69217000 132920000 87203000 76454000 75489000 82128000 92769000 73386000 115570000 6665400 120520000 66838000 133190000 87150000 80753000 77923000 79977000 88956000 20 20 12 20 20 20 20 20 20 20 20 45722000 79189000 716420 73690000 66149000 54949000 62540000 48485000 47060000 51934000 61396000 42576000 73871000 4602100 75284000 63370000 56989000 63146000 49726000 49061000 50580000 58783000 14 14 11 14 14 14 14 14 14 14 14 28252000000 14483000000 13769000000 15961 2345 14646 82115;82116;82117;82118;82119;82120;82121;82122;82123;82124;82125;82126;82127;82128;82129;82130;82131 99358;99359;99360;99361;99362;99363;99364;99365;99366;99367;99368;99369;99370;99371;99372;99373;99374;99375;99376;99377;99378;99379;99380;99381;99382;99383;99384;99385;99386;99387;99388;99389;99390;99391 99379 34 RGPGLYYVDSEGNR Unmodified 1581.7536 0.75356872 838 P28074;P28074-3 PSMB5 Proteasome subunit beta type-5 yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.38 35.434 3 4.3233E-38 8888 20211116_3433_TMUAki_TMT10x_P_F5 255.28 232.16 3771600 6207100 57949 6435500 5637600 6002500 4419300 3273600 3554500 3292000 4706600 3512200 5792800 390100 6542700 5378300 6080300 4519600 3466600 3694800 3214300 4504600 4 4 2 4 4 4 4 4 4 4 4 2538800 4185600 57949 4302700 4561400 5013600 3217400 2285900 2519800 2360800 3151500 2364300 3906000 292820 4391800 4343400 5002400 3312200 2464000 2616500 2302600 3020600 2 2 2 2 2 2 2 2 2 2 2 1232800 2021500 0 2132800 1076200 988880 1201800 987690 1034700 931140 1555100 1147900 1886700 97286 2150900 1034900 1077900 1207300 1002600 1078400 911730 1484100 2 2 0 2 2 2 2 2 2 2 2 390030000 324480000 65553000 15962 838 14647 82132;82133;82134 99392;99393;99394;99395 99393 4 RGPGPVDLLLCCGDFQAVR Unmodified 2129.051 0.051013073 3150 Q9UK59 DBR1 Lariat debranching enzyme yes yes 0 0 0 1 By MS/MS 1 0 1 1 67.47 67.263 3 3.45E-12 23077 20211116_3439_TMUAki_TMT10x_S_F1 128.38 110.02 1618500 2520700 58656 2896400 2033300 1685800 1836400 2164200 1916600 1884100 2093800 1507400 2353500 194660 2910100 1948200 1802800 1875500 2167900 1952600 1851700 2014300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1618500 2520700 58656 2896400 2033300 1685800 1836400 2164200 1916600 1884100 2093800 1507400 2353500 194660 2910100 1948200 1802800 1875500 2167900 1952600 1851700 2014300 1 1 1 1 1 1 1 1 1 1 1 330160000 0 330160000 15963 3150 14648 82135 99396 99396 1 RGPGYTSAPTEEERESFLR Unmodified 2181.0451 0.045059297 1532 Q06787-8;Q06787-6;Q06787-5 FMR1 Fragile X mental retardation protein 1 yes no 0 0 0 2 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.213 35.267 4 1.1229E-63 7511 20211116_3444_TMUAki_TMT10x_S_F5 270.35 236.48 1426100 2436100 24324 2354300 2587100 3143100 1946100 1747600 1821200 1551800 2206800 1328000 2272800 157160 2419300 2466000 3122000 2003700 1841400 1871900 1523700 2116800 3 3 3 3 3 3 3 3 3 3 3 1213000 2010600 24200 1995400 2358300 2924500 1715300 1488800 1536400 1310800 1899100 1129600 1876100 139160 2050600 2246600 2889700 1768000 1580900 1583700 1287500 1820700 2 2 2 2 2 2 2 2 2 2 2 213110 425440 123.18 358900 228750 218590 230840 258770 284740 241050 307690 198430 396730 18002 368740 219400 232240 235710 260540 288130 236150 296100 1 1 1 1 1 1 1 1 1 1 1 247500000 213400000 34092000 15964 1532 14649 82136;82137;82138 99397;99398;99399 99399 3 RGPLAGLGPGSTPR Unmodified 1334.7419 0.74188183 2300 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 35.246 35.139 3 1.5403E-09 8442 20211116_3431_TMUAki_TMT10x_P_F4 135.08 119.93 1344800 2143000 4134.9 1897500 2424800 2008000 1565100 1753600 1842300 1595700 1826500 1252200 1998700 129840 1954800 2303600 2033100 1641100 1791100 1861500 1565000 1762400 2 2 1 2 2 2 2 2 2 2 2 495010 726220 0 839570 1226200 1184100 657500 633390 656300 535920 668250 460900 678060 50653 853650 1161400 1172700 696630 668860 668150 527420 644260 1 1 0 1 1 1 1 1 1 1 1 849780 1416700 4134.9 1057900 1198600 823820 907640 1120200 1186000 1059800 1158200 791260 1320600 79192 1101100 1142200 860350 944490 1122200 1193400 1037500 1118200 1 1 1 1 1 1 1 1 1 1 1 195300000 113470000 81829000 15965 2300 14650 82139;82140 99400;99401 99400 2 RGPLGPNWK Unmodified 1023.5614 0.56139826 1084 P48739;P48739-2;P48739-3 PITPNB Phosphatidylinositol transfer protein beta isoform yes no 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 37.891 37.805 3 0.0023075 12251 20211116_3441_TMUAki_TMT10x_S_F3 80.219 60.606 453540 733760 9286.6 852910 383400 305490 434090 442490 488620 428680 610800 422360 685120 45274 853510 369450 348060 439350 442570 499040 419240 585430 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 453540 733760 9286.6 852910 383400 305490 434090 442490 488620 428680 610800 422360 685120 45274 853510 369450 348060 439350 442570 499040 419240 585430 1 1 1 1 1 1 1 1 1 1 1 20469000 0 20469000 15966 1084 14651 82141;82142 99402 99402 1 RGPPPPPR Unmodified 872.49807 0.49806973 969 P38159;P38159-2 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed yes no 0 0 0 1 By MS/MS By MS/MS 4.5 3.2 2 1 1 2 3 3 23.658 23.698 3 0.002832 5102 20211116_3429_TMUAki_TMT10x_P_F2 96.492 73.472 5952600 8985400 213670 7113200 5484900 8850700 4797100 5973300 5292500 5239000 7464600 5544100 8377400 686100 7414900 5254800 8844700 4917200 6196500 5439600 5146900 7133600 5 5 5 5 5 5 5 5 5 5 5 3248100 4668300 123290 3759200 2728800 4989200 2857100 3262700 2859000 2752700 3956000 3025200 4352600 376920 3917600 2627200 4968000 2891500 3389100 2947300 2709400 3782300 3 3 3 3 3 3 3 3 3 3 3 2704500 4317100 90378 3354000 2756100 3861500 1940000 2710600 2433500 2486300 3508500 2518900 4024700 309180 3497200 2627600 3876600 2025800 2807300 2492300 2437500 3351300 2 2 2 2 2 2 2 2 2 2 2 182720000 132260000 50464000 15967 969 14652 82143;82144;82145;82146;82147;82148 99403;99404;99405;99406;99407;99408 99404 6 RGPQLVCTGSDDGTVK Unmodified 1688.8152 0.8151827 2436 Q96DI7;Q96DI7-2 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.207 35.262 3 1.6756E-69 7496 20211116_3444_TMUAki_TMT10x_S_F5 307.11 267.09 1389100 2171700 18123 2916200 5158300 3062400 1938700 1717600 2143400 1299900 2328500 1293400 2029200 170700 2924600 4865300 3080500 2141200 1801700 2178100 1286800 2240500 4 4 1 4 4 4 4 4 4 4 4 1141900 1799400 18123 2392500 4882200 2883200 1662700 1432700 1787000 1078900 1933600 1063200 1681300 150700 2406200 4600600 2874300 1858700 1519300 1817800 1068300 1860700 3 3 1 3 3 3 3 3 3 3 3 247220 372260 0 523660 276090 179180 276080 284890 356320 220950 394940 230180 347920 19998 518380 264670 206160 282520 282410 360350 218430 379790 1 1 0 1 1 1 1 1 1 1 1 208330000 176600000 31729000 15968 2436 14653 82149;82150;82151 99409;99410;99411;99412 99412 4 RGQRPDFTDAIILR Unmodified 1656.906 0.90598704 1233 P55039 DRG2 Developmentally-regulated GTP-binding protein 2 yes yes 0 0 0 2 By MS/MS 1 0 1 1 43.502 43.502 4 0.0024366 11411 20211116_3428_TMUAki_TMT10x_P_F1 69.258 51.932 827820 1307000 6325.7 1555700 2043800 1920000 1176500 1150600 1135200 973320 1220200 770830 1220500 91558 1575000 1938200 1916200 1237400 1203400 1159700 957900 1174400 1 1 1 1 1 1 1 1 1 1 1 827820 1307000 6325.7 1555700 2043800 1920000 1176500 1150600 1135200 973320 1220200 770830 1220500 91558 1575000 1938200 1916200 1237400 1203400 1159700 957900 1174400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 101900000 101900000 0 15969 1233 14654 82152 99413 99413 1 RGTDECAIESIAVAATPIPK Unmodified 2098.0729 0.072853952 1208 P53634 CTSC Dipeptidyl peptidase 1;Dipeptidyl peptidase 1 exclusion domain chain;Dipeptidyl peptidase 1 heavy chain;Dipeptidyl peptidase 1 light chain yes yes 0 0 0 1 By MS/MS 6 0 1 1 62.538 62.517 3 1.9522E-09 19015 20211116_3445_TMUAki_TMT10x_S_F6 117.84 103.07 1812000 3293600 0 3047800 2378400 1941500 1906500 2934700 2244100 2532900 2869400 1687000 3072400 134170 3110000 2267100 2068400 1969000 2921700 2290400 2490300 2748700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1812000 3293600 0 3047800 2378400 1941500 1906500 2934700 2244100 2532900 2869400 1687000 3072400 134170 3110000 2267100 2068400 1969000 2921700 2290400 2490300 2748700 1 1 0 1 1 1 1 1 1 1 1 352910000 0 352910000 15970 1208 14655 82153 99414 99414 1 RGTGGVDTAATGGVFDISNLDR Unmodified 2178.0665 0.066523021 643 P12532;P12532-2 CKMT1A Creatine kinase U-type, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 55.887 56.067 3 1.658E-12 17078 20211116_3433_TMUAki_TMT10x_P_F5 119.28 101.48 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15971 643 14656 82154;82155 99415;99416 99415 2 RGTGGVDTAAVGGVFDVSNADR Unmodified 2120.0247 0.024658206 642 P12277 CKB Creatine kinase B-type yes yes 0 0 0 1 By MS/MS By MS/MS 4.22 1.31 1 2 2 2 2 5 4 48.636 48.7 3 2.6701E-76 14229 20211116_3442_TMUAki_TMT10x_S_F4 268.25 250.76 19629000 30698000 101110 36042000 27020000 28736000 19212000 20138000 21819000 19050000 24796000 18276000 28664000 1230400 36282000 25710000 29531000 19976000 20876000 22188000 18650000 23828000 11 11 5 11 11 11 11 11 11 11 11 10487000 15786000 79463 18741000 18990000 21040000 11791000 10662000 10990000 10108000 12711000 9765000 14741000 568590 18944000 18031000 21059000 12312000 11347000 11277000 9894600 12208000 5 5 3 5 5 5 5 5 5 5 5 9142000 14912000 21649 17302000 8030400 7695700 7421000 9476500 10828000 8942400 12085000 8511400 13923000 661820 17338000 7679300 8472400 7664800 9529200 10911000 8755700 11619000 6 6 2 6 6 6 6 6 6 6 6 17516000000 10641000000 6875600000 15972 642 14657 82156;82157;82158;82159;82160;82161;82162;82163;82164 99417;99418;99419;99420;99421;99422;99423;99424;99425;99426;99427;99428 99425 12 RGTLSGAPAPPTR Unmodified 1279.6997 0.69968266 2700 Q9BW19 KIFC1 Kinesin-like protein KIFC1 yes yes 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 28.974 28.857 3 1.502E-07 7110 20211116_3429_TMUAki_TMT10x_P_F2 121.13 99.079 479000 686160 1298.8 679450 565450 578260 473150 253880 259340 275020 514220 445970 640240 37306 692120 539630 588040 478140 275130 282230 267730 488160 2 2 1 2 2 2 2 2 2 2 2 479000 686160 1298.8 679450 565450 578260 473150 253880 259340 275020 514220 445970 640240 37306 692120 539630 588040 478140 275130 282230 267730 488160 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28157000 28157000 0 15973 2700 14658 82165;82166;82167 99429;99430;99431 99430 3 RGVFNVQMEPK Unmodified 1303.6707 0.67069072 504 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 0 0 0 1 By MS/MS By MS/MS 5.67 3.3 1 2 2 1 43.409 43.471 3 4.8918E-06 11382 20211116_3428_TMUAki_TMT10x_P_F1 118.28 83.391 3875800 5712300 75888 7451200 6885900 6361200 4278200 4000600 4314900 3914300 5055900 3609300 5336700 434220 7462300 6541500 6494500 4477000 4184100 4414300 3826400 4854300 3 3 3 3 3 3 3 3 3 3 3 2806500 4161400 52131 5415600 6138700 5380100 3368800 2789900 2925000 2748900 3717100 2613500 3887700 327930 5435700 5819600 5424800 3548200 2966100 3023200 2686500 3561200 2 2 2 2 2 2 2 2 2 2 2 1069400 1551000 23758 2035500 747130 981110 909340 1210700 1389900 1165300 1338900 995850 1449000 106290 2026600 721900 1069700 928780 1218000 1391100 1140000 1293200 1 1 1 1 1 1 1 1 1 1 1 237510000 194050000 43469000 15974 504 14659 82168;82169;82170 99432;99433;99434 99432 3 RGVMLAVDAVIAELKK Oxidation (M) 1727.9968 0.99677588 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 1 2 By MS/MS By MS/MS 2.83 0.687 2 3 1 5 1 77.58 77.517 3;4 1.9627E-10 27236 20211116_3430_TMUAki_TMT10x_P_F3 123.14 98.601 39570000 64304000 487740 52019000 38666000 80847000 47206000 55133000 54259000 56575000 50441000 36847000 59957000 3619900 54367000 37312000 80006000 47655000 57396000 54755000 55195000 48777000 7 7 5 7 7 7 7 7 7 7 7 33077000 52808000 447120 43579000 32270000 72881000 39226000 44840000 44651000 46716000 41483000 30800000 49241000 3045100 45548000 31137000 71809000 39593000 47062000 45075000 45548000 40115000 6 6 4 6 6 6 6 6 6 6 6 6493200 11497000 40623 8439900 6396300 7965900 7979300 10293000 9607800 9859500 8958500 6046200 10716000 574840 8818900 6175300 8196600 8061400 10335000 9680000 9647100 8662000 1 1 1 1 1 1 1 1 1 1 1 7110500000 5485200000 1625300000 15975 613 14660 82171;82172;82173;82174;82175;82176 99435;99436;99437;99438;99439;99440;99441 99439 604 7 RGVTIKPTVDDD Unmodified 1314.6779 0.67794416 993 P41091;Q2VIR3 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 0 0 0 2 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.074 35.129 3 1.8019E-05 7438 20211116_3444_TMUAki_TMT10x_S_F5 102.45 88.546 2533600 4292300 14739 4331500 5767400 4790600 3305200 2555700 2985700 2393400 3650300 2359000 4005300 251880 4422900 5467900 4801800 3471500 2706400 3075000 2344200 3500800 3 3 2 3 3 3 3 3 3 3 3 2102000 3623000 6863.4 3585900 5350000 4441200 2838900 2166600 2520500 2004000 3065600 1957100 3380500 208950 3673600 5066000 4420500 3001100 2312800 2597400 1963900 2940400 2 2 1 2 2 2 2 2 2 2 2 431660 669280 7875.9 745580 417400 349390 466310 389030 465250 389370 584780 401970 624800 42928 749300 401930 381270 470410 393550 477600 380260 560410 1 1 1 1 1 1 1 1 1 1 1 164070000 127750000 36323000 15976 993 14661 82177;82178;82179 99442;99443;99444 99444 3 RGVVEYEAQCSR Unmodified 1452.678 0.67796094 2674 Q9BUI4 POLR3C DNA-directed RNA polymerase III subunit RPC3 yes yes 0 0 0 1 By MS/MS 4 0 1 1 30.132 30.171 3 0.095177 6421 20211116_3431_TMUAki_TMT10x_P_F4 37.654 23.992 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15977 2674 14662 82180 99445 99445 1 RHAEQERDELADEITNSASGK Unmodified 2355.1051 0.10509337 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 2 By MS/MS By MS/MS 2.25 0.433 3 1 2 2 38.286 38.119 4;5 4.1208E-44 10803 20211116_3429_TMUAki_TMT10x_P_F2 205.63 191.01 1690100 2624200 64645 3226200 3798000 3899400 2179900 2733500 2872100 2366600 2846800 1574100 2450900 226450 3258800 3604800 3904700 2317200 2827100 2890700 2326400 2747000 6 6 5 6 6 6 6 6 6 6 6 1221300 1892300 63203 2302900 3460500 3609200 1882800 1975500 2106800 1735800 2076400 1137700 1767300 191520 2339800 3282300 3559500 1999200 2083800 2132400 1705100 2004000 3 3 3 3 3 3 3 3 3 3 3 468730 731850 1442.7 923350 337550 290140 297110 757990 765320 630830 770440 436420 683610 34933 918970 322500 345150 317980 743260 758280 621340 743060 3 3 2 3 3 3 3 3 3 3 3 519340000 391910000 127430000 15978 935 14663 82181;82182;82183;82184 99446;99447;99448;99449;99450;99451 99446 6 RHIEIFTDLSSR Unmodified 1472.7736 0.77357588 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 1 By MS/MS By MS/MS 6.6 0.8 3 1 1 3 2 40.174 40.391 3 5.5551E-18 11387 20211116_3435_TMUAki_TMT10x_P_F7 218.11 185.86 5591600 8734600 82931 10970000 13103000 13284000 7279900 8405900 8696300 7592500 8098300 5207000 8158600 646080 11068000 12423000 13281000 7732700 8768400 8763800 7448700 7830600 5 5 5 5 5 5 5 5 5 5 5 4889100 7612300 70978 9449000 12519000 12749000 6714400 7523100 7750600 6835600 7027300 4552800 7110000 578360 9559100 11863000 12667000 7146300 7892100 7813900 6704300 6801400 4 4 4 4 4 4 4 4 4 4 4 702540 1122200 11953 1520800 583860 534990 565530 882780 945740 756900 1071000 654220 1048700 67723 1508500 560090 613630 586370 876230 949940 744420 1029300 1 1 1 1 1 1 1 1 1 1 1 887650000 836560000 51090000 15979 648 14664 82185;82186;82187;82188;82189 99452;99453;99454;99455;99456;99457 99453 6 RHILAILQDCPSLRPPIDHLCELLPR Unmodified 3131.6848 0.684848 696 P16435 POR NADPH--cytochrome P450 reductase yes yes 0 0 0 2 By MS/MS By MS/MS 5 0 2 1 1 98.116 98.091 5 1.2401E-05 33221 20211116_3433_TMUAki_TMT10x_P_F5 73.574 61.093 102810 152310 0 131310 109650 145160 128880 128230 109080 102280 119840 95700 142040 5802.9 135640 105440 146650 129110 130460 112220 100960 115280 2 2 0 2 2 2 2 2 2 2 2 53540 75410 0 73166 45166 97271 68150 60450 52649 47658 65034 49835 70357 2277 75160 43752 96779 67446 62936 54679 47072 62352 1 1 0 1 1 1 1 1 1 1 1 49266 76899 0 58139 64486 47890 60734 67784 56431 54620 54810 45865 71685 3525.9 60484 61687 49867 61668 67521 57539 53887 52923 1 1 0 1 1 1 1 1 1 1 1 8367400 6266500 2100900 15980 696 14665 82190;82191 99458;99459 99458 2 RHPEYAVSVLLR Unmodified 1438.8045 0.80448208 38 CON__P02769 yes yes 0 0 0 1 By MS/MS By MS/MS 3.39 2.62 7 6 2 2 1 1 4 9 14 39.913 39.919 2;3;4 6.3998E-17 9863 20211116_3428_TMUAki_TMT10x_P_F1 211.22 181.16 + 20556000 31347000 242800 34064000 28446000 24697000 23374000 33455000 31480000 27602000 31135000 19141000 29260000 1990200 34419000 27159000 25934000 24225000 33398000 31658000 27199000 30046000 25 25 19 25 25 25 25 25 25 25 25 5380100 8360600 133860 8893900 13358000 13637000 9150600 12185000 11492000 9938500 8951500 5010300 7803300 672360 9106500 12710000 13567000 9574400 12395000 11499000 9799000 8713900 9 9 8 9 9 9 9 9 9 9 9 15176000 22986000 108940 25170000 15088000 11060000 14223000 21270000 19987000 17664000 22184000 14131000 21457000 1317800 25313000 14449000 12367000 14651000 21003000 20159000 17400000 21332000 16 16 11 16 16 16 16 16 16 16 16 4368600000 2608400000 1760200000 15981 38 14666 82192;82193;82194;82195;82196;82197;82198;82199;82200;82201;82202;82203;82204;82205;82206;82207;82208;82209;82210;82211;82212;82213;82214 99460;99461;99462;99463;99464;99465;99466;99467;99468;99469;99470;99471;99472;99473;99474;99475;99476;99477;99478;99479;99480;99481;99482;99483;99484;99485;99486 99460 27 RHPYFYAPELLYYANK Unmodified 2044.0207 0.020682448 38 CON__P02769 yes yes 0 0 0 1 By MS/MS By MS/MS 2.86 0.639 2 4 1 4 3 62.35 62.087 3;4 5.8853E-16 22114 20211116_3441_TMUAki_TMT10x_S_F3 158.52 141.01 + 33742000 50587000 701740 50694000 40983000 50046000 43603000 50396000 54518000 55170000 43117000 31421000 47204000 2833900 51699000 39390000 51031000 44429000 51364000 54581000 53686000 41947000 11 11 6 11 11 11 11 11 11 11 11 17721000 26531000 250170 24474000 23710000 35829000 28433000 29049000 29563000 30728000 21195000 16500000 24749000 1102500 25283000 22856000 35647000 28628000 29927000 29729000 29942000 20706000 6 6 2 6 6 6 6 6 6 6 6 16022000 24056000 451570 26219000 17273000 14217000 15171000 21347000 24956000 24442000 21922000 14921000 22455000 1731400 26416000 16535000 15384000 15801000 21437000 24852000 23744000 21241000 5 5 4 5 5 5 5 5 5 5 5 8070300000 5155300000 2914900000 15982 38 14667 82215;82216;82217;82218;82219;82220;82221 99487;99488;99489;99490;99491;99492;99493;99494;99495;99496;99497 99495 11 RHVFGESDELIGQK Unmodified 1613.8162 0.81616898 1271 P60174;P60174-1;P60174-4 TPI1 Triosephosphate isomerase yes no 0 0 0 1 By MS/MS By MS/MS 5.17 0.687 1 3 2 4 2 39.19 39.228 3;4 9.9647E-20 9259 20211116_3444_TMUAki_TMT10x_S_F5 149.71 134.33 3966100 6089500 30536 8496600 11430000 10526000 5356700 4801100 5188700 4251600 5348700 3692900 5691100 436130 8528200 10807000 10469000 5745900 5153900 5291700 4175000 5154700 5 5 3 5 5 5 5 5 5 5 5 3966100 6089500 30536 8496600 11430000 10526000 5356700 4801100 5188700 4251600 5348700 3692900 5691100 436130 8528200 10807000 10469000 5745900 5153900 5291700 4175000 5154700 5 5 3 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 674660000 577540000 97126000 15983 1271 14668 82222;82223;82224;82225;82226;82227 99498;99499;99500;99501;99502;99503;99504 99504 7 RIACGPPQAK Unmodified 1096.5811 0.58114743 3311 Q9Y520;Q9Y520-3;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520-7 PRRC2C Protein PRRC2C yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 29.808 29.874 3 3.6635E-09 5986 20211116_3428_TMUAki_TMT10x_P_F1 137.95 96.67 177540 300600 0 252940 184600 132340 200360 103820 131510 128360 209380 165290 280320 12653 259610 177260 141620 200280 107730 139570 124360 199570 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 177540 300600 0 252940 184600 132340 200360 103820 131510 128360 209380 165290 280320 12653 259610 177260 141620 200280 107730 139570 124360 199570 1 1 0 1 1 1 1 1 1 1 1 7049600 0 7049600 15984 3311 14669 82228;82229 99505;99506 99505 2 RIAELSEDDQK Unmodified 1302.6416 0.64155866 2735 Q9BZE4;Q9BZE4-3;Q9BZE4-2 GTPBP4 Nucleolar GTP-binding protein 1 yes no 0 0 0 1 By MS/MS 3 0 1 1 35.182 34.942 3 0.0015278 10985 20211116_3441_TMUAki_TMT10x_S_F3 72.891 35.91 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15985 2735 14670 82230 99507 99507 1 RIALTDNALIAR Unmodified 1325.7779 0.77793298 716 P18124 RPL7 60S ribosomal protein L7 yes yes 0 0 0 1 By MS/MS By MS/MS 4.14 3.09 2 2 1 2 4 3 44.93 44.946 3 3.341E-24 11907 20211116_3428_TMUAki_TMT10x_P_F1 244.72 215.86 20814000 34045000 115200 39568000 25595000 27919000 19950000 27799000 32595000 26880000 28919000 19380000 31788000 1516300 39801000 24398000 29158000 20923000 28243000 32476000 26290000 28011000 10 10 7 10 10 10 10 10 10 10 10 8235600 12912000 76873 14848000 15480000 17069000 10043000 9428800 10153000 9302100 10861000 7668700 12056000 855890 15044000 14711000 17080000 10475000 9968300 10349000 9090100 10455000 5 5 5 5 5 5 5 5 5 5 5 12579000 21133000 38325 24719000 10115000 10851000 9907000 18370000 22442000 17578000 18059000 11711000 19733000 660390 24757000 9687000 12078000 10448000 18275000 22126000 17200000 17556000 5 5 2 5 5 5 5 5 5 5 5 3389200000 2228200000 1161100000 15986 716 14671 82231;82232;82233;82234;82235;82236;82237 99508;99509;99510;99511;99512;99513;99514;99515;99516;99517 99508 10 RIANLQTDLSDGLR Unmodified 1570.8427 0.84271808 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 48.524 48.621 3 4.5176E-19 12880 20211116_3434_TMUAki_TMT10x_P_F6 170.42 136.24 8715800 13743000 67261 14716000 15660000 17888000 11956000 11786000 11649000 10096000 12204000 8115800 12828000 882540 14992000 14927000 17891000 12311000 12240000 11884000 9930200 11756000 3 3 3 3 3 3 3 3 3 3 3 8715800 13743000 67261 14716000 15660000 17888000 11956000 11786000 11649000 10096000 12204000 8115800 12828000 882540 14992000 14927000 17891000 12311000 12240000 11884000 9930200 11756000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 546540000 546540000 0 15987 755 14672 82238;82239 99518;99519;99520;99521 99520 4 RIAQETFDAAVR Unmodified 1375.7208 0.72081203 1986 Q6NXE6;Q6NXE6-2 ARMC6 Armadillo repeat-containing protein 6 yes no 0 0 0 1 By MS/MS 6 0 1 1 39.106 39.112 3 0.00066005 9108 20211116_3434_TMUAki_TMT10x_P_F6 77.696 51.979 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15988 1986 14673 82240 99522 99522 1 RIATGSFLK Unmodified 991.58147 0.581465 767 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 0 1 By MS/MS 3 0 1 1 39.849 39.902 3 0.0067119 11768 20211116_3430_TMUAki_TMT10x_P_F3 66.758 7.161 336670 498780 173 550070 902610 865860 478170 523840 541540 438140 535480 313450 465600 32858 562270 854600 854920 509190 547300 547930 431440 516750 2 2 1 2 2 2 2 2 2 2 2 336670 498780 173 550070 902610 865860 478170 523840 541540 438140 535480 313450 465600 32858 562270 854600 854920 509190 547300 547930 431440 516750 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10168000 10168000 0 15989 767 14674 82241 99523;99524 99523 2 RIEAEEAIK Unmodified 1057.5768 0.57677356 815;1717 P26378;P26378-4;P26378-2;P26378-5;P26378-1;P26378-3;Q12926;Q12926-2;Q14576-2;Q14576 ELAVL4;ELAVL2;ELAVL3 ELAV-like protein 4;ELAV-like protein 2;ELAV-like protein 3 no no 0 0 0 1 By MS/MS By MS/MS 3 0.707 1 2 1 3 1 34.474 34.359 3 3.5163E-06 10715 20211116_3441_TMUAki_TMT10x_S_F3 166.97 115.7 3844700 5103300 65694 6278700 4860500 4734400 3527700 2823900 3145200 2923300 4186500 3580200 4766300 394200 6299200 4631000 4875400 3636200 2970500 3253400 2851000 4006400 3 3 3 3 3 3 3 3 3 3 3 2792100 3655600 55017 4541800 3780800 3952200 2375100 2047700 2293800 2181500 3056900 2600200 3414400 296610 4561900 3593200 4019800 2480200 2182100 2364200 2125000 2925200 2 2 2 2 2 2 2 2 2 2 2 1052500 1447700 10677 1736900 1079700 782240 1152600 776170 851400 741870 1129700 980090 1351900 97594 1737200 1037800 855650 1156000 788430 889210 725960 1081100 1 1 1 1 1 1 1 1 1 1 1 308820000 219010000 89809000 15990 815;1717 14675 82242;82243;82244;82245 99525;99526;99527 99527 3 RIEESAIDEVVVTNTIPHEVQK Unmodified 2505.3075 0.30748157 259 O60256;O60256-4;O60256-2 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.957 1 2 2 1 4 2 58.4 58.286 4 9.0731E-28 20528 20211116_3441_TMUAki_TMT10x_S_F3 178.84 150.94 40467000 66987000 604170 70777000 52369000 66045000 45856000 42420000 39387000 41341000 50774000 37681000 62520000 3857600 71866000 50072000 67043000 46654000 44290000 40757000 40420000 48628000 11 11 6 11 11 11 11 11 11 11 11 25440000 41371000 435930 44157000 33739000 51776000 31518000 25301000 23048000 24757000 30477000 23689000 38614000 2449000 44965000 32309000 51681000 31824000 27044000 24081000 24202000 29170000 7 7 4 7 7 7 7 7 7 7 7 15026000 25616000 168240 26620000 18631000 14269000 14338000 17119000 16339000 16583000 20297000 13992000 23906000 1408600 26901000 17763000 15362000 14830000 17246000 16675000 16218000 19457000 4 4 2 4 4 4 4 4 4 4 4 5259600000 3173700000 2085900000 15991 259 14676 82246;82247;82248;82249;82250;82251 99528;99529;99530;99531;99532;99533;99534;99535;99536;99537;99538 99535 11 RIEFAEQINK Unmodified 1246.667 0.66698555 2796 Q9H307 PNN Pinin yes yes 0 0 0 1 By MS/MS By MS/MS 6 0.707 1 2 1 1 3 43.196 43.428 3 1.213E-05 10762 20211116_3434_TMUAki_TMT10x_P_F6 137.92 94.149 16488000 26548000 219050 27345000 20316000 20429000 15749000 21338000 23998000 20545000 23524000 15354000 24775000 1624700 27737000 19378000 21258000 16469000 21625000 24036000 20098000 22708000 5 5 5 5 5 5 5 5 5 5 5 4591300 6949100 20836 7291000 9419000 10667000 5571300 5548000 6216400 5588900 6101300 4275100 6485500 467690 7464400 8935900 10544000 5872400 5900400 6291800 5456700 5889300 1 1 1 1 1 1 1 1 1 1 1 11897000 19599000 198210 20054000 10897000 9761100 10178000 15790000 17782000 14956000 17423000 11079000 18290000 1157000 20273000 10442000 10714000 10597000 15725000 17745000 14641000 16818000 4 4 4 4 4 4 4 4 4 4 4 1835200000 803350000 1031900000 15992 2796 14677 82252;82253;82254;82255 99539;99540;99541;99542;99543 99539 5 RIEGLIER Unmodified 984.57163 0.5716286 1657 Q13618;Q13618-3;Q13618-2 CUL3 Cullin-3 yes no 0 0 0 1 By matching By MS/MS 4.5 0.5 1 1 1 1 35.583 35.685 3 0.0037777 7722 20211116_3444_TMUAki_TMT10x_S_F5 91.658 43.567 335900 523860 1173 572020 368930 327670 365390 406690 430070 404440 466500 312770 489000 29405 576500 353730 350660 372820 409440 435990 395090 448890 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 335900 523860 1173 572020 368930 327670 365390 406690 430070 404440 466500 312770 489000 29405 576500 353730 350660 372820 409440 435990 395090 448890 1 1 1 1 1 1 1 1 1 1 1 136370000 96315000 40060000 15993 1657 14678 82256;82257 99544 99544 1 RIEGSGDQVDTLELSGGAR Unmodified 1958.9657 0.96574634 1140 P50570;P50570-3;P50570-2;P50570-5;P50570-4 DNM2 Dynamin-2 yes no 0 0 0 1 By MS/MS By MS/MS 2 0.816 1 1 1 1 2 41.355 41.063 3 2.1859E-31 13459 20211116_3441_TMUAki_TMT10x_S_F3 185.96 169.08 3830000 5905200 65618 6962900 5784400 6045300 3517800 4264000 4601700 3635400 4970300 3566300 5514200 361270 7014900 5490400 6175100 3720400 4406400 4647100 3576400 4783200 4 4 2 4 4 4 4 4 4 4 4 2033900 2942500 65618 3566600 4343900 4741000 2225300 2259100 2369700 1908100 2474100 1894300 2748000 262130 3612000 4115900 4701600 2372500 2411700 2408200 1878000 2383400 2 2 2 2 2 2 2 2 2 2 2 1796100 2962800 0 3396300 1440500 1304300 1292500 2004900 2232000 1727300 2496200 1672000 2766200 99135 3402800 1374600 1473500 1347800 1994700 2238900 1698400 2399800 2 2 0 2 2 2 2 2 2 2 2 323030000 190000000 133030000 15994 1140 14679 82258;82259;82260 99545;99546;99547;99548;99549 99549 5 RIELLEEVKR Unmodified 1283.7561 0.75613491 263 O60306 AQR Intron-binding protein aquarius yes yes 0 0 0 2 By MS/MS 7 0 1 1 44.23 44.755 4 3.4645E-06 13657 20211116_3446_TMUAki_TMT10x_S_F7 143.17 92.077 532330 798780 6568.4 897020 531600 482090 516440 706890 705610 649640 744050 495700 745710 50245 901960 509740 521770 530490 705660 710920 636830 716560 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 532330 798780 6568.4 897020 531600 482090 516440 706890 705610 649640 744050 495700 745710 50245 901960 509740 521770 530490 705660 710920 636830 716560 1 1 1 1 1 1 1 1 1 1 1 146850000 0 146850000 15995 263 14680 82261 99550 99550 1 RIEPADAHVLQK Unmodified 1375.7572 0.75719754 2762 Q9GZZ1;Q9GZZ1-2 NAA50 N-alpha-acetyltransferase 50 yes no 0 0 0 1 By MS/MS 5 0 1 1 34.673 34.624 4 0.0037446 8579 20211116_3433_TMUAki_TMT10x_P_F5 62.799 42.693 2154400 3396100 46533 3741800 4724400 4190800 2761400 2059600 2176900 1986400 2624400 2006300 3170300 257980 3799500 4483400 4193700 2885600 2199400 2256100 1943100 2517800 2 2 2 2 2 2 2 2 2 2 2 2154400 3396100 46533 3741800 4724400 4190800 2761400 2059600 2176900 1986400 2624400 2006300 3170300 257980 3799500 4483400 4193700 2885600 2199400 2256100 1943100 2517800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 90106000 90106000 0 15996 2762 14681 82262 99551;99552 99551 2 RIEQHYFEDR Unmodified 1391.6582 0.65821178 333 O75431;O75431-2 MTX2 Metaxin-2 yes no 0 0 0 1 By MS/MS 4 0 2 2 31.405 31.437 3;4 0.00082478 6934 20211116_3431_TMUAki_TMT10x_P_F4 89.44 66.7 718280 1096600 5820.9 1001200 1382700 1504900 912530 810030 844170 792950 987950 668830 1022900 74281 1035600 1314400 1486400 948090 858130 866890 775140 948590 2 2 2 2 2 2 2 2 2 2 2 718280 1096600 5820.9 1001200 1382700 1504900 912530 810030 844170 792950 987950 668830 1022900 74281 1035600 1314400 1486400 948090 858130 866890 775140 948590 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 52344000 52344000 0 15997 333 14682 82263;82264 99553;99554 99554 2 RIESLIDRDYMER Oxidation (M) 1710.8359 0.83591814 1658 Q13619;Q13619-2;Q13620-1;Q13620;Q13620-3 CUL4A;CUL4B Cullin-4A;Cullin-4B yes no 0 0 1 2 By matching By MS/MS 4.67 0.471 1 2 1 2 39.566 39.678 4 0.0025145 9495 20211116_3444_TMUAki_TMT10x_S_F5 64.537 52.744 918640 1579900 15791 1615500 835910 744690 853160 1105000 1180800 965810 1327300 855460 1474300 89720 1632500 802900 820450 874640 1101200 1192100 949000 1275900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 918640 1579900 15791 1615500 835910 744690 853160 1105000 1180800 965810 1327300 855460 1474300 89720 1632500 802900 820450 874640 1101200 1192100 949000 1275900 2 2 2 2 2 2 2 2 2 2 2 221360000 134000000 87361000 15998 1658 14683 82265;82266;82267 99555;99556 99556 2221 2 RIEVNVELRK Unmodified 1254.7408 0.74081919 1172 P52292 KPNA2 Importin subunit alpha-1 yes yes 0 0 0 2 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 38.67 38.76 4 7.2342E-06 9907 20211116_3431_TMUAki_TMT10x_P_F4 140.24 107.91 2688500 3936200 14296 4403800 3329500 3376800 2608500 2356700 2649800 2480300 2950100 2503300 3674700 234820 4444300 3174500 3480500 2684900 2451400 2704500 2417300 2836500 5 5 4 5 5 5 5 5 5 5 5 1735000 2487600 5417.4 2732800 2372000 2537600 1611900 1347700 1575600 1506400 1762600 1615400 2322200 147430 2767700 2254900 2570400 1673600 1435100 1611200 1464700 1694500 2 2 1 2 2 2 2 2 2 2 2 953540 1448600 8878.3 1671000 957470 839180 996660 1009000 1074100 973830 1187500 887910 1352500 87385 1676500 919590 910020 1011300 1016300 1093400 952540 1142000 3 3 3 3 3 3 3 3 3 3 3 206940000 133220000 73720000 15999 1172 14684 82268;82269;82270;82271 99557;99558;99559 99557 3 RIEYIEAR Unmodified 1048.5665 0.56654322 2302 Q8WUW1;Q8WUW1-2 BRK1 Protein BRICK1 yes no 0 0 0 1 By MS/MS 3 0 1 1 32.949 32.71 3 0.0054636 10100 20211116_3441_TMUAki_TMT10x_S_F3 74.533 47.23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16000 2302 14685 82272 99560 99560 1 RIFDANTKPNLNLQVLSNPEFLAEGTAIK Unmodified 3212.7194 0.71936205 283 O60701;O60701-3 UGDH UDP-glucose 6-dehydrogenase yes no 0 0 0 2 By MS/MS 2 0 1 1 77.375 77.334 5 0.055979 25340 20211116_3440_TMUAki_TMT10x_S_F2 37.344 31.914 3726800 6864400 4585.2 5587700 7267000 4225900 5347400 5237000 5065600 4341300 4999300 3470000 6400400 362830 5770200 6919900 4411700 5515800 5246700 5163300 4276800 4824700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3726800 6864400 4585.2 5587700 7267000 4225900 5347400 5237000 5065600 4341300 4999300 3470000 6400400 362830 5770200 6919900 4411700 5515800 5246700 5163300 4276800 4824700 1 1 1 1 1 1 1 1 1 1 1 349570000 0 349570000 16001 283 14686 82273 99561 99561 1 RIFHTVTTTDDPVIR Unmodified 1769.9424 0.94243213 185 O15371;O15371-2;O15371-3 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 0 0 0 1 By MS/MS 7 0 2 2 38.186 38.624 3;4 3.2391E-30 10813 20211116_3435_TMUAki_TMT10x_P_F7 212.7 175.11 565930 923360 24774 964060 1312700 1408700 812580 842320 909610 694560 798910 527120 861740 80467 987270 1247600 1394900 853390 880570 917200 684430 774110 3 3 3 3 3 3 3 3 3 3 3 565930 923360 24774 964060 1312700 1408700 812580 842320 909610 694560 798910 527120 861740 80467 987270 1247600 1394900 853390 880570 917200 684430 774110 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 61563000 61563000 0 16002 185 14687 82274;82275 99562;99563;99564 99564 3 RIFHTVTTTDDPVIRK Unmodified 1898.0374 0.037395144 185 O15371;O15371-2;O15371-3 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 0 0 0 2 By matching By MS/MS 1.5 0.5 1 1 1 1 38.755 38.802 5 5.7724E-05 9681 20211116_3440_TMUAki_TMT10x_S_F2 85.178 72.345 480350 771000 6519.2 1019500 421460 349840 390960 606950 679450 538630 739900 447290 720350 43450 1012500 403640 403480 407100 602090 680740 528870 711880 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 480350 771000 6519.2 1019500 421460 349840 390960 606950 679450 538630 739900 447290 720350 43450 1012500 403640 403480 407100 602090 680740 528870 711880 2 2 1 2 2 2 2 2 2 2 2 105110000 92362000 12753000 16003 185 14688 82276;82277 99565;99566 99565 2 RIFQEPTEPK Unmodified 1243.6561 0.65608651 887 P31350;P31350-2 RRM2 Ribonucleoside-diphosphate reductase subunit M2 yes no 0 0 0 1 By MS/MS 6 0 1 1 35.685 35.666 3 0.0517 7890 20211116_3434_TMUAki_TMT10x_P_F6 47.154 20.183 171700 250920 295.8 277870 395020 342730 214350 162940 176650 150030 206890 159870 234240 17638 282540 374240 341110 225710 174350 182440 147060 198640 1 1 1 1 1 1 1 1 1 1 1 171700 250920 295.8 277870 395020 342730 214350 162940 176650 150030 206890 159870 234240 17638 282540 374240 341110 225710 174350 182440 147060 198640 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7274400 7274400 0 16004 887 14689 82278 99567 99567 1 RIGDELDSNMELQR Oxidation (M) 1690.7944 0.79444726 1539 Q07812;Q07812-2;Q07812-5;Q07812-7;Q07812-8 BAX Apoptosis regulator BAX yes no 0 0 1 1 By MS/MS 2 0 1 1 37.031 36.798 3 0.0013998 10208 20211116_3429_TMUAki_TMT10x_P_F2 65.753 54.648 1130200 1039900 0 2045900 1806200 1570000 822370 695940 883700 1005300 731210 1052300 974070 96315 2009000 1706700 1609100 887500 760950 890920 969040 710090 1 1 0 1 1 1 1 1 1 1 1 1130200 1039900 0 2045900 1806200 1570000 822370 695940 883700 1005300 731210 1052300 974070 96315 2009000 1706700 1609100 887500 760950 890920 969040 710090 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 51723000 51723000 0 16005 1539 14690 82279 99568 99568 2072 1 RIGIFGQDEDVTSK Unmodified 1563.7893 0.78928553 697 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 49.437 49.621 3 3.7149E-12 14455 20211116_3433_TMUAki_TMT10x_P_F5 141 103.45 11262000 17358000 73278 20855000 21059000 20711000 13038000 15220000 14555000 12468000 16033000 10487000 16210000 1105200 21027000 19993000 20984000 13691000 15670000 14793000 12290000 15420000 3 3 1 3 3 3 3 3 3 3 3 7577700 11740000 73278 14140000 17442000 17964000 10498000 9696000 9543100 8133400 10468000 7056000 10963000 815930 14313000 16553000 17879000 10982000 10229000 9783100 8007900 10069000 2 2 1 2 2 2 2 2 2 2 2 3684800 5618800 0 6715100 3616700 2746800 2540100 5524300 5011800 4334700 5565000 3430800 5247000 289220 6713800 3439800 3105400 2709400 5441000 5010100 4282500 5351200 1 1 0 1 1 1 1 1 1 1 1 918690000 577730000 340960000 16006 697 14691 82280;82281;82282 99569;99570;99571;99572 99571 4 RIGVPSATEIIK Unmodified 1282.7609 0.76088593 2918 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 1 By MS/MS By MS/MS 6 2.92 1 1 2 3 1 48.504 48.637 3 1.9416E-12 13565 20211116_3436_TMUAki_TMT10x_P_F8 139.48 88.41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16007 2918 14692 82283;82284;82285;82286 99573;99574;99575;99576 99574 4 RIIDDSEITKEDDALWPPPDR Unmodified 2480.2183 0.21833222 1309;2405 P61326;Q96A72 MAGOH;MAGOHB Protein mago nashi homolog;Protein mago nashi homolog 2 no no 0 0 0 2 By MS/MS 3 0 1 1 60.105 59.848 4 5.531E-19 20103 20211116_3430_TMUAki_TMT10x_P_F3 146.72 131.59 10667000 16732000 146150 19143000 14902000 18927000 14769000 9109200 8661900 9396500 12735000 9933400 15622000 1077500 19356000 14294000 19075000 14799000 9765700 9223800 9165300 12159000 3 3 2 3 3 3 3 3 3 3 3 10667000 16732000 146150 19143000 14902000 18927000 14769000 9109200 8661900 9396500 12735000 9933400 15622000 1077500 19356000 14294000 19075000 14799000 9765700 9223800 9165300 12159000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 552640000 552640000 0 16008 1309;2405 14693 82287 99577;99578;99579 99578 3 RIILEAEK Unmodified 970.58113 0.58113065 1795 Q15382 RHEB GTP-binding protein Rheb yes yes 0 0 0 1 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 38.32 38.37 3 0.00024886 8979 20211116_3444_TMUAki_TMT10x_S_F5 140.45 19.458 2073400 3269000 13523 3489000 3205500 3002000 2207300 2274600 2057200 2099500 2563200 1930600 3051100 197380 3536500 3049200 3071900 2286500 2344100 2117300 2057700 2457000 3 3 2 3 3 3 3 3 3 3 3 1214400 1861300 5512.8 2071800 2214200 2232900 1320900 1386300 1265900 1325900 1505000 1130700 1737500 116840 2101100 2100800 2245800 1384900 1450400 1298800 1297500 1444400 2 2 1 2 2 2 2 2 2 2 2 859020 1407700 8010.6 1417200 991340 769030 886360 888340 791240 773520 1058200 799890 1313600 80538 1435400 948390 826090 901620 893750 818580 760190 1012500 1 1 1 1 1 1 1 1 1 1 1 106440000 66372000 40063000 16009 1795 14694 82288;82289;82290 99580;99581;99582 99582 3 RIILLAEGR Unmodified 1039.6502 0.65021327 786 P23526;P23526-2 AHCY Adenosylhomocysteinase yes no 0 0 0 1 By MS/MS By MS/MS 3.33 2.58 2 3 2 2 5 4 42.651 42.627 3 5.2949E-07 12662 20211116_3429_TMUAki_TMT10x_P_F2 169.76 130.1 1846800 2891100 20784 3273200 3368000 3352400 2210900 2568000 2231500 2357000 2680300 1719700 2699100 191780 3313400 3201400 3392700 2303800 2644200 2285200 2310700 2571700 6 6 5 6 6 6 6 6 6 6 6 1216400 1858000 11152 2149800 2733900 2858200 1689900 1705800 1472000 1566700 1790400 1132700 1734800 132500 2183200 2595800 2842200 1762000 1788300 1518400 1535800 1717300 4 4 4 4 4 4 4 4 4 4 4 630410 1033100 9631.7 1123400 634110 494120 521000 862220 759440 790340 889840 587030 964350 59283 1130200 605620 550460 541770 855920 766790 774850 854360 2 2 1 2 2 2 2 2 2 2 2 326960000 177090000 149870000 16010 786 14695 82291;82292;82293;82294;82295;82296;82297;82298;82299 99583;99584;99585;99586;99587;99588;99589;99590 99584 8 RIILLVK Unmodified 853.61131 0.61130857 1170 P52209;P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 1 By MS/MS By MS/MS 4.5 1.12 2 2 2 2 4 4 49.966 50.026 3 0.0024362 14366 20211116_3431_TMUAki_TMT10x_P_F4 146.21 49.135 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16011 1170 14696 82300;82301;82302;82303;82304;82305;82306;82307 99591;99592;99593;99594;99595;99596;99597;99598 99592 8 RILDSAEFIK Unmodified 1190.6659 0.66592292 1428 P78347;P78347-2;P78347-4;P78347-3 GTF2I General transcription factor II-I yes no 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 52.946 53.055 3 4.6287E-05 15029 20211116_3445_TMUAki_TMT10x_S_F6 126.66 88.572 4156300 6866200 49181 7246100 5907600 6834700 4342000 6068700 5914600 5309100 6037500 3870100 6408300 386410 7359300 5626300 6970900 4534900 6186200 5952700 5216500 5820400 2 2 1 2 2 2 2 2 2 2 2 2256100 3657100 0 3860400 4021000 5141300 2872400 2784600 2776500 2524600 3174400 2100400 3413300 183220 3943000 3824800 5105600 2970700 2942300 2842900 2476300 3049900 1 1 0 1 1 1 1 1 1 1 1 1900200 3209100 49181 3385700 1886700 1693400 1469600 3284100 3138100 2784600 2863100 1769700 2995100 203190 3416200 1801500 1865300 1564100 3243800 3109700 2740200 2770500 1 1 1 1 1 1 1 1 1 1 1 679210000 416150000 263060000 16012 1428 14697 82308;82309 99599;99600 99600 2 RILELDQFK Unmodified 1160.6554 0.65535823 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 54.655 54.981 3 4.8091E-06 16155 20211116_3436_TMUAki_TMT10x_P_F8 159.83 128.75 45578000 73840000 429170 88937000 66357000 61049000 42069000 41735000 51846000 44384000 57985000 42438000 68957000 4184400 89247000 63023000 63479000 44245000 43487000 52534000 43238000 55746000 5 5 3 5 5 5 5 5 5 5 5 23584000 36222000 419280 42653000 48523000 48404000 27325000 21547000 25966000 22423000 28842000 21962000 33823000 2664900 43145000 46016000 48352000 28783000 23289000 26577000 21863000 27734000 3 3 2 3 3 3 3 3 3 3 3 21994000 37618000 9887.6 46284000 17834000 12645000 14744000 20189000 25880000 21960000 29143000 20476000 35134000 1519500 46102000 17007000 15127000 15461000 20199000 25957000 21375000 28012000 2 2 1 2 2 2 2 2 2 2 2 4274700000 2123700000 2151000000 16013 647 14698 82310;82311;82312;82313 99601;99602;99603;99604;99605 99602 5 RILELDQFKGQQGQK Unmodified 1786.969 0.96898123 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 2 By MS/MS 1 0 1 1 47.527 47.527 4 1.3305E-14 13013 20211116_3428_TMUAki_TMT10x_P_F1 157.09 142.51 1815900 3566600 15693 3270200 7585400 7960500 4140300 5082400 5962800 4291900 4234400 1690900 3326900 245980 3427200 7187600 7755600 4436300 5289000 5925100 4224300 4138200 1 1 1 1 1 1 1 1 1 1 1 1815900 3566600 15693 3270200 7585400 7960500 4140300 5082400 5962800 4291900 4234400 1690900 3326900 245980 3427200 7187600 7755600 4436300 5289000 5925100 4224300 4138200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 333040000 333040000 0 16014 647 14699 82314 99606 99606 1 RILEPDDFLDDLDDEDYEEDTPK Unmodified 2796.2138 0.21375993 2364 Q92785 DPF2 Zinc finger protein ubi-d4 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 77.871 77.844 3 1.211E-05 27333 20211116_3439_TMUAki_TMT10x_S_F1 80.002 72.469 10569000 18874000 67332 16634000 12708000 13864000 13715000 8416400 8749800 10318000 12236000 9839900 17603000 836860 17086000 12206000 14172000 13705000 8889100 9242400 9998700 11696000 3 3 1 3 3 3 3 3 3 3 3 4030500 6821500 67332 6129800 4042500 7546200 4962800 3311600 3300000 3925700 4415800 3753300 6362600 397070 6323500 3903300 7505000 4934400 3599100 3469600 3808700 4225200 1 1 1 1 1 1 1 1 1 1 1 6538100 12053000 0 10504000 8665600 6317300 8752300 5104800 5449800 6392200 7820700 6086600 11241000 439780 10763000 8302600 6666700 8771000 5290000 5772800 6190000 7470900 2 2 0 2 2 2 2 2 2 2 2 1716300000 1080600000 635770000 16015 2364 14700 82315;82316 99607;99608;99609 99608 3 RILHCLGLAEEIQK Unmodified 1678.9189 0.91885991 1195 P53004 BLVRA Biliverdin reductase A yes yes 0 0 0 1 By MS/MS 8 0 1 1 51.681 51.768 3 0.030905 14846 20211116_3436_TMUAki_TMT10x_P_F8 46.797 34.166 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16016 1195 14701 82317 99610 99610 1 RILSKPIEVQVGGR Unmodified 1550.9257 0.92565985 2049 Q7L014 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 0 0 0 2 By MS/MS By MS/MS 3.25 0.829 1 1 2 1 3 41.2 41.204 4 4.2692E-30 10814 20211116_3431_TMUAki_TMT10x_P_F4 216.34 208.36 3118700 4878200 28394 5901400 4936400 4443500 3552300 4314000 4340600 3734800 4501300 2903900 4555700 294940 5926400 4699200 4613800 3700000 4375400 4387000 3671400 4337300 4 4 3 4 4 4 4 4 4 4 4 1096000 1693200 15474 2043200 2668400 2715800 1549000 1525900 1630200 1269300 1609100 1020600 1581300 127310 2069800 2531400 2698400 1632300 1603800 1654200 1250300 1552900 1 1 1 1 1 1 1 1 1 1 1 2022700 3184900 12920 3858200 2268000 1727700 2003200 2788100 2710300 2465400 2892200 1883300 2974400 167630 3856600 2167800 1915300 2067700 2771600 2732800 2421200 2784400 3 3 2 3 3 3 3 3 3 3 3 1045300000 567900000 477400000 16017 2049 14702 82318;82319;82320;82321 99611;99612;99613;99614 99611 4 RILVATNLFGR Unmodified 1258.751 0.75098995 1665;63 O00148;Q13838;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B no no 0 0 0 1 By MS/MS 8 0 1 1 53.746 53.848 3 6.98E-15 15704 20211116_3436_TMUAki_TMT10x_P_F8 193.22 158.39 772250 1351900 0 1264700 1330700 2065200 1150300 1314600 1137300 1177100 1069400 718940 1261200 58375 1308400 1270600 2037600 1175800 1370400 1155200 1155300 1033700 1 1 0 1 1 1 1 1 1 1 1 772250 1351900 0 1264700 1330700 2065200 1150300 1314600 1137300 1177100 1069400 718940 1261200 58375 1308400 1270600 2037600 1175800 1370400 1155200 1155300 1033700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 234750000 234750000 0 16018 63;1665 14703 82322 99615 99615 1 RIMLFTNEDNPHGNDSAK Oxidation (M) 2073.9538 0.95380145 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 1 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 37.463 37.522 4 2.4855E-17 8486 20211116_3444_TMUAki_TMT10x_S_F5 146.13 124.53 2793100 4114700 17701 6847100 8379600 5868400 3649900 3748400 4507600 3254600 4026900 2600700 3849600 315530 6777500 7916200 5991000 3976100 3903300 4531100 3199000 3899500 4 4 1 4 4 4 4 4 4 4 4 2390400 3468900 17701 5748800 8088500 5646900 3424700 3274800 3891300 2831200 3443900 2225800 3245400 291620 5702200 7639300 5705600 3732100 3436000 3922400 2783400 3336100 3 3 1 3 3 3 3 3 3 3 3 402620 645770 0 1098200 291110 221490 225150 473620 616350 423470 582950 374820 604260 23909 1075300 276960 285390 243940 467320 608730 415640 563390 1 1 0 1 1 1 1 1 1 1 1 549260000 424490000 124770000 16019 647 14704 82323;82324;82325 99616;99617;99618;99619 99619 693 4 RIMLFTNEDNPHGNDSAK Unmodified 2057.9589 0.95888683 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 1 By MS/MS 6 0 1 1 39.788 39.951 4 2.7885E-17 9840 20211116_3445_TMUAki_TMT10x_S_F6 143.46 128.04 552850 888680 6977 1547500 400610 248820 341010 420300 460480 405610 716310 514810 831690 50205 1512800 383050 337440 352720 418230 472310 396750 683080 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 552850 888680 6977 1547500 400610 248820 341010 420300 460480 405610 716310 514810 831690 50205 1512800 383050 337440 352720 418230 472310 396750 683080 2 2 2 2 2 2 2 2 2 2 2 67468000 0 67468000 16020 647 14704 82326 99620;99621 99621 2 RINVELSTK Unmodified 1058.6084 0.60840804 2534 Q96PK6;Q96PK6-2 RBM14 RNA-binding protein 14 yes no 0 0 0 1 By MS/MS By MS/MS 4.82 2.85 2 2 1 1 2 3 7 4 36.71 36.83 3 2.8417E-05 8390 20211116_3436_TMUAki_TMT10x_P_F8 149.17 82.367 9013700 13667000 114090 15257000 12797000 11226000 9592800 8419900 9223100 8185900 11147000 8393500 12759000 904440 15392000 12197000 11622000 9886500 8695400 9467300 8004400 10694000 16 16 15 16 16 16 16 16 16 16 16 4623800 6628100 71153 7568600 8258800 7731700 5088400 4097200 4427400 4225800 5489000 4305800 6188200 498400 7657200 7843400 7784900 5306700 4353100 4570700 4121900 5262200 9 9 8 9 9 9 9 9 9 9 9 4389800 7038800 42934 7688600 4538200 3494400 4504400 4322600 4795700 3960100 5658200 4087700 6570400 406040 7735000 4353200 3837200 4579800 4342300 4896700 3882600 5431500 7 7 7 7 7 7 7 7 7 7 7 361510000 191930000 169580000 16021 2534 14705 82327;82328;82329;82330;82331;82332;82333;82334;82335;82336;82337 99622;99623;99624;99625;99626;99627;99628;99629;99630;99631;99632;99633;99634;99635;99636;99637;99638 99628 17 RIPFGFK Unmodified 863.50176 0.50175812 796 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 0 0 0 1 By MS/MS 5 0 1 1 48.63 48.81 3 0.0025364 13045 20211116_3444_TMUAki_TMT10x_S_F5 113.1 38.664 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16022 796 14706 82338 99639 99639 1 RIPIPELEAR Unmodified 1192.6928 0.69280637 335 O75439 PMPCB Mitochondrial-processing peptidase subunit beta yes yes 0 0 0 1 By MS/MS By MS/MS 6 0.707 1 2 1 2 2 46.554 46.8 3 1.4338E-06 12082 20211116_3434_TMUAki_TMT10x_P_F6 150.33 117.2 3681100 6029200 82473 6459300 4697400 5145700 3845600 5491100 5225600 4635500 5348100 3428100 5627500 396280 6539600 4487600 5330900 3988100 5539900 5260100 4562600 5155300 3 3 3 3 3 3 3 3 3 3 3 1230700 1876000 37411 2234500 2280400 2792700 1694300 1807300 1659700 1515700 1739100 1146200 1751900 151600 2262500 2174100 2788400 1748200 1878500 1692800 1492400 1675200 1 1 1 1 1 1 1 1 1 1 1 2450300 4153100 45062 4224900 2416900 2353000 2151300 3683800 3565900 3119800 3609000 2281800 3875600 244680 4277000 2313500 2542500 2239800 3661400 3567300 3070200 3480100 2 2 2 2 2 2 2 2 2 2 2 586450000 333110000 253340000 16023 335 14707 82339;82340;82341;82342 99640;99641;99642;99643 99641 4 RIPLAEWESR Unmodified 1255.6673 0.6673199 891 P31930 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 44.555 44.832 3 6.9847E-09 11650 20211116_3445_TMUAki_TMT10x_S_F6 174.24 137.06 5090700 8508000 66466 9974900 8749600 8728700 6392000 5677500 4948100 4786600 6786000 4740300 7944300 520790 10054000 8333300 8900500 6562200 5899800 5162300 4711600 6489300 5 5 3 5 5 5 5 5 5 5 5 3634700 6154000 61972 7145500 7308100 7672200 5144900 4072000 3488000 3411700 4812100 3384600 5746000 399490 7227400 6956000 7702600 5280500 4302000 3668000 3359200 4601100 3 3 2 3 3 3 3 3 3 3 3 1456000 2354000 4493.7 2829400 1441500 1056500 1247100 1605600 1460100 1374900 1973800 1355700 2198300 121300 2826400 1377300 1198000 1281700 1597800 1494300 1352300 1888200 2 2 1 2 2 2 2 2 2 2 2 1031500000 690350000 341130000 16024 891 14708 82343;82344;82345;82346;82347 99644;99645;99646;99647;99648 99647 5 RIPPAIK Unmodified 793.51741 0.51740818 2594 Q99627;Q99627-2 COPS8 COP9 signalosome complex subunit 8 yes no 0 0 0 1 By MS/MS 2 0.816 1 1 1 3 33.061 33.006 3 0.028249 7311 20211116_3440_TMUAki_TMT10x_S_F2 69.176 37.886 110050 177510 0 181070 107640 96814 124740 70841 95029 87523 104500 102440 165640 6763.3 183210 103490 103240 124710 73837 98311 84793 100520 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 110050 177510 0 181070 107640 96814 124740 70841 95029 87523 104500 102440 165640 6763.3 183210 103490 103240 124710 73837 98311 84793 100520 1 1 0 1 1 1 1 1 1 1 1 21550000 0 21550000 16025 2594 14709 82348;82349;82350 99649 99649 1 RIPQSTLSEFYPR Unmodified 1592.8311 0.83109076 753 P21281 ATP6V1B2 V-type proton ATPase subunit B, brain isoform yes yes 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 50.672 50.5 3 5.2737E-26 15826 20211116_3429_TMUAki_TMT10x_P_F2 234.83 189.72 16619000 27494000 427150 29098000 25913000 29971000 20636000 24043000 23220000 21264000 23705000 15477000 25661000 1890500 29585000 24739000 30345000 21288000 24661000 23527000 20882000 22852000 8 8 6 8 8 8 8 8 8 8 8 10054000 16108000 254710 16805000 19374000 24210000 15135000 14115000 14011000 12761000 13936000 9363600 15033000 1197900 17205000 18485000 23980000 15539000 14820000 14300000 12519000 13445000 4 4 3 4 4 4 4 4 4 4 4 6564800 11386000 172440 12293000 6539800 5761100 5501500 9927900 9209100 8502900 9769100 6113600 10628000 692600 12379000 6254200 6365600 5749500 9841100 9226300 8363100 9406500 4 4 3 4 4 4 4 4 4 4 4 2328500000 1329600000 998900000 16026 753 14710 82351;82352;82353;82354 99650;99651;99652;99653;99654;99655;99656;99657 99652 8 RIPSIVSSPLNSPLDR Unmodified 1749.9737 0.97373226 1121 P49790;P49790-2;P49790-3 NUP153 Nuclear pore complex protein Nup153 yes no 0 0 0 1 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 55.899 55.621 3 5.0477E-21 19396 20211116_3441_TMUAki_TMT10x_S_F3 162.77 137.38 4084200 6723100 5514.3 7614000 5321200 6234600 4567500 5823500 5389900 5143800 5516800 3802700 6276700 340390 7684000 5082300 6427200 4697900 5921300 5451800 5051700 5317900 2 2 1 2 2 2 2 2 2 2 2 1839500 2924100 0 3285700 2800100 4025100 2388900 2836900 2468300 2498500 2363300 1712600 2729900 145280 3337400 2673200 4028200 2447100 2934200 2503900 2454100 2283000 1 1 0 1 1 1 1 1 1 1 1 2244700 3798900 5514.3 4328400 2521100 2209500 2178600 2986600 2921600 2645300 3153500 2090100 3546800 195110 4346600 2409100 2399100 2250800 2987100 2947900 2597600 3034900 1 1 1 1 1 1 1 1 1 1 1 1718100000 977250000 740850000 16027 1121 14711 82355;82356;82357 99658;99659 99659 2 RIPYAPSGEIPK Unmodified 1326.7296 0.7295858 283 O60701;O60701-3;O60701-2 UGDH UDP-glucose 6-dehydrogenase yes no 0 0 0 1 By MS/MS By MS/MS 5.86 3.09 2 1 4 4 3 43.935 44.063 3;4 7.1505E-10 11645 20211116_3436_TMUAki_TMT10x_P_F8 158.86 116.52 19415000 31363000 278660 36567000 37548000 37218000 23451000 30163000 32490000 26278000 30424000 18079000 29285000 2090100 36947000 35663000 37716000 24805000 30908000 32584000 25824000 29413000 10 10 8 10 10 10 10 10 10 10 10 12321000 19562000 139490 22648000 31367000 31451000 17794000 19437000 21044000 17007000 19348000 11473000 18265000 1406800 23018000 29743000 31227000 18859000 20296000 21206000 16710000 18717000 6 6 5 6 6 6 6 6 6 6 6 7094400 11801000 139170 13920000 6181100 5766500 5657500 10726000 11446000 9271200 11076000 6606500 11019000 683340 13929000 5920500 6488900 5945200 10611000 11378000 9114600 10696000 4 4 3 4 4 4 4 4 4 4 4 2633300000 2098400000 534870000 16028 283 14712 82358;82359;82360;82361;82362;82363;82364 99660;99661;99662;99663;99664;99665;99666;99667;99668;99669;99670 99664 11 RIQDPTEDAEAEDTPR Unmodified 1841.8391 0.83914885 460 O96028;O96028-5;O96028-3 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 32.776 32.665 3 4.8248E-05 7090 20211116_3428_TMUAki_TMT10x_P_F1 86.213 71.337 107830 176220 0 210510 302600 236740 150450 123240 146890 97399 147490 100400 164560 11594 212720 286320 237010 160450 130260 149610 96190 142260 1 1 0 1 1 1 1 1 1 1 1 107830 176220 0 210510 302600 236740 150450 123240 146890 97399 147490 100400 164560 11594 212720 286320 237010 160450 130260 149610 96190 142260 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42223000 42223000 0 16029 460 14713 82365;82366 99671 99671 1 RIQEIIEQLDVTTSEYEK Unmodified 2193.1165 0.11649291 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 4.18 1.7 3 1 2 2 2 1 4 7 77.63 77.613 3 3.6391E-31 26787 20211116_3429_TMUAki_TMT10x_P_F2 186.94 168.58 62614000 97368000 506550 103760000 56840000 59346000 61280000 31614000 37020000 40631000 60277000 58300000 90878000 5056200 104740000 54609000 62574000 61176000 33813000 39549000 39311000 57427000 11 11 5 11 11 11 11 11 11 11 11 28261000 39825000 180920 44653000 21659000 31137000 23467000 12740000 15743000 16821000 24487000 26313000 37179000 2092400 45011000 20803000 32140000 23470000 14004000 16664000 16260000 23351000 4 4 1 4 4 4 4 4 4 4 4 34353000 57543000 325630 59109000 35181000 28209000 37813000 18874000 21277000 23810000 35790000 31987000 53699000 2963800 59728000 33806000 30433000 37706000 19809000 22884000 23051000 34076000 7 7 4 7 7 7 7 7 7 7 7 13778000000 6295800000 7482700000 16030 613 14714 82367;82368;82369;82370;82371;82372;82373;82374;82375;82376;82377 99672;99673;99674;99675;99676;99677;99678;99679;99680;99681;99682;99683 99672 12 RIQLVEEELDR Unmodified 1398.7467 0.74669243 526;527;525;1413;578;579 P06753-2;P06753-3;P06753-5;P06753-4;P06753-6;P09493-4;P09493;P09493-6;P06753;P09493-5;P67936;P67936-2;P07951;P07951-2;CON__Q3SX28;P07951-3 TPM3;TPM1;TPM4;TPM2 Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain;Tropomyosin beta chain no no 0 0 0 1 By MS/MS By MS/MS 2.33 1.11 2 1 2 1 5 1 46.461 46.359 3 1.2129E-14 15664 20211116_3441_TMUAki_TMT10x_S_F3 188.15 151.38 + 5539900 8176500 30969 9712700 9369000 10450000 6267600 7414300 7322100 6446500 8207500 5158100 7635300 505640 9811100 8905000 10532000 6552300 7662600 7434300 6335900 7890100 4 4 3 4 4 4 4 4 4 4 4 4624400 6614400 27366 8001400 8568100 9762600 5471800 6120600 6120200 5402400 6811900 4305600 6177200 427980 8091100 8137000 9755000 5732200 6385300 6222400 5305800 6549800 3 3 2 3 3 3 3 3 3 3 3 915550 1562000 3603 1711300 800910 687350 795850 1293700 1201900 1044100 1395700 852500 1458100 77658 1720000 768040 777020 820100 1277300 1211900 1030000 1340300 1 1 1 1 1 1 1 1 1 1 1 905840000 753090000 152750000 16031 526;527;578;525;579;1413 14715 82378;82379;82380;82381;82382;82383 99684;99685;99686;99687;99688 99688 5 RIQLVEEELDRAQER Unmodified 1882.9861 0.98608786 526;527;525;1413;578;579 P06753-2;P06753-3;P06753-5;P06753-4;P06753-6;P09493-4;P09493;P09493-6;P06753;P09493-5;P67936;P67936-2;P07951;P07951-2;CON__Q3SX28;P07951-3 TPM3;TPM1;TPM4;TPM2 Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain;Tropomyosin beta chain no no 0 0 0 2 By MS/MS By MS/MS 2.67 1.19 3 4 4 3 1 8 7 46.249 46.193 3;4 2.6741E-116 15551 20211116_3441_TMUAki_TMT10x_S_F3 377.58 318.28 + 16612000 26656000 268030 30968000 27113000 30415000 19238000 24682000 23883000 20791000 24061000 15469000 24889000 1642100 31279000 25811000 30890000 20070000 25268000 24100000 20466000 23205000 16 16 11 16 16 16 16 16 16 16 16 10841000 16969000 231300 19675000 21714000 25604000 14677000 16056000 15312000 13239000 15397000 10096000 15844000 1240500 19970000 20656000 25503000 15275000 16722000 15552000 13046000 14851000 9 9 7 9 9 9 9 9 9 9 9 5771100 9686700 36730 11292000 5399000 4811500 4560900 8626100 8571800 7552600 8663400 5373400 9044700 401520 11310000 5155400 5387100 4794300 8545700 8548000 7420500 8354400 7 7 4 7 7 7 7 7 7 7 7 9933100000 6158100000 3775000000 16032 526;527;578;525;579;1413 14716 82384;82385;82386;82387;82388;82389;82390;82391;82392;82393;82394;82395;82396;82397;82398 99689;99690;99691;99692;99693;99694;99695;99696;99697;99698;99699;99700;99701;99702;99703;99704;99705 99701 17 RIQQLTEEIGR Unmodified 1341.7365 0.7364621 641 P12270 TPR Nucleoprotein TPR yes yes 0 0 0 1 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 39.968 40.111 3 1.2954E-11 10896 20211116_3433_TMUAki_TMT10x_P_F5 130.44 105.93 1493600 2227100 17569 2634300 1301600 1125500 1423800 1411500 1420600 1284700 1837400 1390900 2079700 137520 2636100 1252100 1246100 1437800 1416900 1460200 1259900 1759600 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1493600 2227100 17569 2634300 1301600 1125500 1423800 1411500 1420600 1284700 1837400 1390900 2079700 137520 2636100 1252100 1246100 1437800 1416900 1460200 1259900 1759600 3 3 3 3 3 3 3 3 3 3 3 129270000 0 129270000 16033 641 14717 82399;82400;82401 99706;99707;99708;99709 99706 4 RISATSIFFESMPYK Oxidation (M) 1791.8866 0.88655673 915 P34897;P34897-3;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 1 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 61.547 61.19 3 7.4901E-05 21682 20211116_3441_TMUAki_TMT10x_S_F3 84.946 72.66 8337000 14158000 122530 13636000 10280000 10992000 9382100 9230700 8992000 9222600 11311000 7763500 13209000 832040 13908000 9841400 11321000 9551500 9473800 9247100 9007600 10839000 3 3 2 3 3 3 3 3 3 3 3 3267300 5084600 0 4733200 3555700 5752200 3613000 3210600 2856000 3334300 4144200 3042200 4743200 274370 4868700 3410800 5740000 3638400 3396300 2984400 3251400 3957900 1 1 0 1 1 1 1 1 1 1 1 5069700 9073200 122530 8902800 6723900 5239300 5769100 6020100 6135900 5888200 7166700 4721300 8465600 557670 9039600 6430600 5581000 5913100 6077500 6262700 5756200 6881500 2 2 2 2 2 2 2 2 2 2 2 1149500000 636920000 512570000 16034 915 14718 82402;82403 99710;99711;99712 99711 1149 3 RISAVSVAER Unmodified 1086.6146 0.61455605 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 1 By MS/MS 5 0 1 1 30.643 30.579 3 9.5745E-07 6918 20211116_3433_TMUAki_TMT10x_P_F5 153.74 113.89 571660 840140 30750 789170 742310 896980 544150 491200 494740 467500 667530 532500 783740 78442 810290 708640 898020 560780 519190 511610 457560 638590 1 1 1 1 1 1 1 1 1 1 1 571660 840140 30750 789170 742310 896980 544150 491200 494740 467500 667530 532500 783740 78442 810290 708640 898020 560780 519190 511610 457560 638590 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 53770000 53770000 0 16035 1546 14719 82404 99713 99713 1 RISAYSALSHPYFQDLER Unmodified 2152.0702 0.070151836 1469 Q00534 CDK6 Cyclin-dependent kinase 6 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 53.06 52.915 4 1.5463E-17 15151 20211116_3428_TMUAki_TMT10x_P_F1 151.03 139.38 5485700 8665900 73497 9337900 7692200 9008400 6319900 7139100 7068300 6041600 7684000 5108200 8088700 554200 9473800 7345600 9155500 6505500 7320000 7179900 5945800 7393500 4 4 4 4 4 4 4 4 4 4 4 3642900 5668500 29692 5855500 5899400 7424100 4647000 4570400 4642700 3867700 4972200 3392100 5290000 361300 5983800 5627000 7402300 4779000 4769900 4735100 3806400 4786300 2 2 2 2 2 2 2 2 2 2 2 1842800 2997400 43805 3482500 1792800 1584400 1673000 2568700 2425600 2173900 2711800 1716100 2798700 192900 3490000 1718600 1753200 1726500 2550100 2444800 2139400 2607100 2 2 2 2 2 2 2 2 2 2 2 1285100000 984130000 300990000 16036 1469 14720 82405;82406 99714;99715;99716;99717 99715 4 RISEIEDAAFLAR Unmodified 1489.7889 0.7888916 337 O75477 ERLIN1 Erlin-1 yes yes 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 54.488 54.575 3 3.5391E-19 16211 20211116_3431_TMUAki_TMT10x_P_F4 187.63 162.42 5648300 9160700 65006 9289300 7131400 8100300 5694100 14464000 10960000 8932800 9132200 5259200 8548300 499120 9449800 6802500 8468400 6013900 14220000 10854000 8952100 8866100 3 3 2 3 3 3 3 3 3 3 3 1697700 2487800 54729 2665500 2739600 3566400 2110800 2089900 2038100 1883300 2144000 1581200 2322000 206350 2720100 2614400 3544500 2171700 2193200 2080400 1847900 2064900 1 1 1 1 1 1 1 1 1 1 1 3950600 6672900 10276 6623800 4391800 4533900 3583300 12374000 8921700 7049500 6988200 3678000 6226300 292770 6729600 4188000 4923900 3842200 12026000 8774100 7104200 6801100 2 2 1 2 2 2 2 2 2 2 2 763810000 363480000 400330000 16037 337 14721 82407;82408 99718;99719;99720 99718 3 RISEQFTAMFR Oxidation (M) 1400.6871 0.68706906 1418;1668;2689;539;1640;488 Q13509;Q13509-2;P07437;P68371;Q13885;Q9BVA1;P04350 TUBB3;TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB4A Tubulin beta-3 chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain no no 0 0 1 1 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 43.659 43.531 3 0.030458 11525 20211116_3440_TMUAki_TMT10x_S_F2 48.468 23.615 5739200 10118000 56866 11702000 8548900 7829500 5805600 6802100 6722800 6617300 8603500 5343800 9447400 519570 11768000 8128400 8192000 6060700 6962300 6865900 6470400 8241300 4 4 2 4 4 4 4 4 4 4 4 1971600 3099600 44565 3695400 4894200 4826400 2727700 2260500 2314100 2100600 2730500 1836100 2894500 245920 3744700 4641000 4789400 2867300 2423000 2387100 2058200 2621100 1 1 1 1 1 1 1 1 1 1 1 3767600 7018700 12300 8006600 3654700 3003100 3077900 4541600 4408700 4516700 5873000 3507700 6552900 273640 8023400 3487400 3402600 3193400 4539200 4478800 4412300 5620200 3 3 1 3 3 3 3 3 3 3 3 546900000 209870000 337030000 16038 1640;539;1418;1668;2689;488 14722 82409;82410;82411;82412;82413 99721;99722;99723 99723 381 3 RISEQFTAMFR Unmodified 1384.6922 0.69215444 1418;1668;2689;539;1640;488 Q13509;Q13509-2;P07437;P68371;Q13885;Q9BVA1;P04350 TUBB3;TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB4A Tubulin beta-3 chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain no no 0 0 0 1 By MS/MS 3 0 1 1 54.724 54.344 3 3.5718E-08 18865 20211116_3441_TMUAki_TMT10x_S_F3 143.55 120.81 1206300 2200800 36071 2308300 1206300 1121200 1324500 1254100 1173400 1186600 1672200 1123500 2054000 133630 2329500 1161800 1218400 1332600 1266300 1218100 1161600 1597700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1206300 2200800 36071 2308300 1206300 1121200 1324500 1254100 1173400 1186600 1672200 1123500 2054000 133630 2329500 1161800 1218400 1332600 1266300 1218100 1161600 1597700 1 1 1 1 1 1 1 1 1 1 1 157130000 0 157130000 16039 1640;539;1418;1668;2689;488 14722 82414 99724 99724 1 RISGLIYEETR Unmodified 1335.7147 0.71466402 1366 P62805 HIST1H4A Histone H4 yes yes 0 0 0 1 By MS/MS By MS/MS 5 2.02 4 4 6 5 7 12 12 3 27 26 40.873 40.996 2;3 2.7323E-48 12184 20211116_3446_TMUAki_TMT10x_S_F7 315.72 235.62 256730000 400950000 3638100 547390000 305890000 310720000 235470000 175420000 321770000 259470000 300830000 239040000 374680000 20992000 544550000 291530000 328100000 245200000 187700000 322830000 249950000 290840000 79 79 28 79 79 79 79 79 79 79 79 141130000 212380000 936180 286030000 251600000 216140000 138770000 94491000 169610000 135870000 156060000 131390000 198450000 10891000 285550000 238280000 221760000 147620000 103450000 170720000 130990000 150970000 39 39 12 39 39 39 39 39 39 39 39 115600000 188570000 2701900 261360000 54292000 94586000 96699000 80932000 152160000 123600000 144770000 107650000 176230000 10100000 258990000 53253000 106340000 97585000 84252000 152110000 118960000 139880000 40 40 16 40 40 40 40 40 40 40 40 285510000000 152410000000 133100000000 16040 1366 14723 82415;82416;82417;82418;82419;82420;82421;82422;82423;82424;82425;82426;82427;82428;82429;82430;82431;82432;82433;82434;82435;82436;82437;82438;82439;82440;82441;82442;82443;82444;82445;82446;82447;82448;82449;82450;82451;82452;82453;82454;82455;82456;82457;82458;82459;82460;82461;82462;82463;82464;82465;82466;82467 99725;99726;99727;99728;99729;99730;99731;99732;99733;99734;99735;99736;99737;99738;99739;99740;99741;99742;99743;99744;99745;99746;99747;99748;99749;99750;99751;99752;99753;99754;99755;99756;99757;99758;99759;99760;99761;99762;99763;99764;99765;99766;99767;99768;99769;99770;99771;99772;99773;99774;99775;99776;99777;99778;99779;99780;99781;99782;99783;99784;99785;99786;99787;99788;99789;99790;99791;99792;99793;99794;99795;99796;99797;99798;99799;99800;99801;99802;99803;99804;99805;99806;99807;99808;99809;99810;99811 99802 87 RISGLIYEETRGVLK Unmodified 1732.9836 0.98356866 1366 P62805 HIST1H4A Histone H4 yes yes 0 0 0 2 By MS/MS By MS/MS 3.52 2.56 7 10 4 1 1 4 4 16 15 57.982 57.897 2;3;4 5.9432E-95 16683 20211116_3428_TMUAki_TMT10x_P_F1 335.74 296.93 383960000 625050000 3163500 743090000 380800000 467540000 361050000 320570000 419590000 372720000 430400000 357510000 583680000 32602000 745620000 364680000 490000000 369070000 334910000 424690000 361870000 414860000 43 43 27 43 43 43 43 43 43 43 43 205230000 329840000 2225900 403400000 241980000 339380000 210270000 170400000 230210000 195440000 230360000 191100000 308050000 18326000 405380000 231280000 345880000 215560000 182530000 233330000 189840000 222220000 21 21 14 21 21 21 21 21 21 21 21 178730000 295220000 937680 339690000 138820000 128170000 150780000 150170000 189380000 177290000 200040000 166410000 275630000 14277000 340230000 133410000 144110000 153510000 152380000 191350000 172030000 192640000 22 22 13 22 22 22 22 22 22 22 22 159810000000 52724000000 107080000000 16041 1366 14724 82468;82469;82470;82471;82472;82473;82474;82475;82476;82477;82478;82479;82480;82481;82482;82483;82484;82485;82486;82487;82488;82489;82490;82491;82492;82493;82494;82495;82496;82497;82498 99812;99813;99814;99815;99816;99817;99818;99819;99820;99821;99822;99823;99824;99825;99826;99827;99828;99829;99830;99831;99832;99833;99834;99835;99836;99837;99838;99839;99840;99841;99842;99843;99844;99845;99846;99847;99848;99849;99850;99851;99852;99853;99854;99855;99856 99817 45 RISTLTIEEGNLDIQRPK Unmodified 2082.1433 0.14331678 1581 Q12972;Q12972-2 PPP1R8 Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay yes no 0 0 0 2 By MS/MS By MS/MS 6.6 0.49 2 3 2 3 48.795 49.163 4;5 5.4125E-50 15508 20211116_3446_TMUAki_TMT10x_S_F7 221.37 204.15 22039000 35793000 210770 42806000 36246000 34936000 26720000 23685000 27374000 25127000 30032000 20522000 33425000 2193100 43056000 34526000 35823000 27621000 24692000 27914000 24481000 28889000 7 7 5 7 7 7 7 7 7 7 7 13084000 19659000 45684 25143000 26500000 26081000 19191000 11044000 13777000 12185000 15639000 12183000 18364000 1285800 25276000 25226000 26173000 19681000 12022000 14318000 11853000 15029000 4 4 2 4 4 4 4 4 4 4 4 8955000 16134000 165080 17663000 9747000 8855200 7528400 12640000 13597000 12942000 14393000 8339200 15061000 907380 17779000 9300100 9649500 7940300 12670000 13596000 12627000 13860000 3 3 3 3 3 3 3 3 3 3 3 5409900000 2928100000 2481800000 16042 1581 14725 82499;82500;82501;82502;82503 99857;99858;99859;99860;99861;99862;99863 99861 7 RITSPLMEPSSIEK Unmodified 1586.8338 0.83379288 835 P28066 PSMA5 Proteasome subunit alpha type-5 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0 3 1 2 48.4 48.954 3 3.1702E-06 14924 20211116_3435_TMUAki_TMT10x_P_F7 109.07 80.097 4937000 8240900 85081 10191000 10186000 10723000 7282500 5461300 5139500 4809000 6165400 4597200 7696900 521870 10266000 9696600 10773000 7472500 5798700 5358800 4723600 5915800 2 2 1 2 2 2 2 2 2 2 2 4937000 8240900 85081 10191000 10186000 10723000 7282500 5461300 5139500 4809000 6165400 4597200 7696900 521870 10266000 9696600 10773000 7472500 5798700 5358800 4723600 5915800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 761800000 495870000 265930000 16043 835 14726 82504;82505;82506 99864;99865;99866 99865 3 RITSPLMEPSSIEK Oxidation (M) 1602.8287 0.8287075 835 P28066 PSMA5 Proteasome subunit alpha type-5 yes yes 0 0 1 1 By MS/MS 6 0 1 1 43.432 43.597 3 0.00072936 11177 20211116_3445_TMUAki_TMT10x_S_F6 74.783 51.904 1314700 2268900 20588 3008700 994860 837220 946770 1835600 2039500 1555400 1907600 1224200 2119900 123700 2984700 953950 1009300 996690 1807500 2022400 1530600 1844300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1314700 2268900 20588 3008700 994860 837220 946770 1835600 2039500 1555400 1907600 1224200 2119900 123700 2984700 953950 1009300 996690 1807500 2022400 1530600 1844300 1 1 1 1 1 1 1 1 1 1 1 223700000 0 223700000 16044 835 14726 82507 99867 99867 1009 1 RIVAHAVEVPAVQSPR Unmodified 1727.9795 0.97948634 2459 Q96FF9 CDCA5 Sororin yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 35.412 35.395 4 2.049E-05 8125 20211116_3428_TMUAki_TMT10x_P_F1 92.952 77.75 1989500 2945800 11423 3696900 2806400 2487200 2231500 1462500 1459800 1420300 2417700 1852400 2751500 171050 3700300 2676100 2585400 2269700 1537400 1552800 1388900 2302600 3 3 1 3 3 3 3 3 3 3 3 846120 1196800 11423 1644000 1832800 1627700 1096300 687890 718090 637500 1096900 787900 1118500 93449 1645300 1739400 1638100 1138800 745320 760530 624690 1046400 2 2 1 2 2 2 2 2 2 2 2 1143400 1749000 0 2052900 973630 859530 1135200 774610 741690 782840 1320800 1064500 1633100 77600 2055000 936660 947330 1130900 792110 792310 764220 1256200 1 1 0 1 1 1 1 1 1 1 1 85566000 46665000 38901000 16045 2459 14727 82508;82509 99868;99869;99870 99868 3 RIVAPPGGR Unmodified 921.55083 0.55083358 1692 Q14195-2;Q14195 DPYSL3 Dihydropyrimidinase-related protein 3 yes no 0 0 0 1 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 26.138 26.068 3 0.00011478 8191 20211116_3441_TMUAki_TMT10x_S_F3 134.77 79.216 1009200 1448600 904.65 1320800 968510 1386200 1120400 634070 657750 717760 959560 939540 1351200 70362 1357400 931650 1391200 1114200 685140 700110 697560 916310 6 6 2 6 6 6 6 6 6 6 6 437340 635130 904.65 579160 429740 684830 480610 274680 306290 336880 422430 407190 592440 34750 596380 413250 681920 479450 301830 323340 326450 403910 4 4 2 4 4 4 4 4 4 4 4 571840 813430 0 741640 538770 701350 639810 359390 351470 380880 537120 532350 758750 35612 761060 518400 709290 634770 383310 376760 371110 512400 2 2 0 2 2 2 2 2 2 2 2 101290000 26518000 74774000 16046 1692 14728 82510;82511;82512;82513;82514 99871;99872;99873;99874;99875;99876 99876 6 RIVAVTGAEAQK Unmodified 1241.7092 0.70918471 1104 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 33.858 34.443 3 3.558E-07 9629 20211116_3446_TMUAki_TMT10x_S_F7 124.38 89.999 50326 101570 3151.3 79221 61936 50279 64333 75961 68432 69464 86479 46882 94693 7271.9 81964 59638 53584 65257 75741 70079 68110 82864 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50326 101570 3151.3 79221 61936 50279 64333 75961 68432 69464 86479 46882 94693 7271.9 81964 59638 53584 65257 75741 70079 68110 82864 1 1 1 1 1 1 1 1 1 1 1 7518700 0 7518700 16047 1104 14729 82515;82516 99877;99878 99878 2 RIVEGILK Unmodified 926.5913 0.59130141 1794 Q15370;Q15370-2 TCEB2 Transcription elongation factor B polypeptide 2 yes no 0 0 0 1 By MS/MS 1 0 1 1 44.08 44.08 3 0.029857 11617 20211116_3428_TMUAki_TMT10x_P_F1 60.045 21.743 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16048 1794 14730 82517 99879 99879 1 RIVENGQERVEVEEDGQLK Unmodified 2226.124 0.1240379 315 O75190;Q8NHS0;O75190-2;O75190-3;O75190-4 DNAJB6;DNAJB8 DnaJ homolog subfamily B member 6;DnaJ homolog subfamily B member 8 yes no 0 0 0 2 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 38.225 37.972 4 4.4303E-31 12192 20211116_3441_TMUAki_TMT10x_S_F3 180.31 148.51 545600 879530 554.12 992100 982920 890800 629760 657030 716190 539930 779000 507990 821110 49603 1002600 933480 908480 659930 676320 727050 532140 749520 2 2 1 2 2 2 2 2 2 2 2 314750 482660 554.12 510320 761910 687980 401940 403650 434670 319150 420750 293070 450480 32874 521320 721540 683520 427540 422220 440280 315180 406310 1 1 1 1 1 1 1 1 1 1 1 230840 396870 0 481770 221020 202820 227820 253390 281520 220780 358240 214920 370640 16729 481320 211940 224960 232400 254100 286770 216970 343210 1 1 0 1 1 1 1 1 1 1 1 66176000 39747000 26429000 16049 315 14731 82518;82519 99880;99881 99881 2 RIVEQDTMPPK Oxidation (M) 1328.6758 0.67583567 104 O00571;O00571-2;O15523;O15523-2 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 1 1 By MS/MS 5 0 1 1 31.875 32.038 3 0.0031447 6285 20211116_3444_TMUAki_TMT10x_S_F5 65.842 50.869 43045 68104 0 85379 41726 26366 35968 39177 35530 33461 55164 40073 63613 2692.3 84998 39809 30788 36772 39015 36862 32915 52607 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 43045 68104 0 85379 41726 26366 35968 39177 35530 33461 55164 40073 63613 2692.3 84998 39809 30788 36772 39015 36862 32915 52607 1 1 0 1 1 1 1 1 1 1 1 9244900 0 9244900 16050 104 14732 82520 99882 99882 86 1 RIVITGDGDIDHDQALAQAIR Unmodified 2276.1873 0.18730686 220 O43491;O43491-4;O43491-2;O43491-3 EPB41L2 Band 4.1-like protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 50.648 50.81 4 1.803E-55 15143 20211116_3442_TMUAki_TMT10x_S_F4 228.68 201.03 5725900 9780200 116300 10259000 8220200 9237500 6372000 8452500 8398000 7955400 8225100 5332200 9127700 612590 10416000 7842200 9455900 6622800 8618700 8448700 7790100 7939800 4 4 3 4 4 4 4 4 4 4 4 2893700 4883400 96177 5490700 4912300 6832100 3760400 3714900 3930500 3724700 4044000 2695000 4559000 357810 5578600 4687000 6807300 3879800 3934700 3995200 3637400 3897600 2 2 2 2 2 2 2 2 2 2 2 2832200 4896700 20121 4767900 3308000 2405400 2611600 4737600 4467500 4230600 4181100 2637200 4568700 254780 4837800 3155200 2648600 2742900 4684000 4453500 4152800 4042200 2 2 1 2 2 2 2 2 2 2 2 2208000000 1123500000 1084500000 16051 220 14733 82521;82522;82523;82524 99883;99884;99885;99886 99885 4 RIVLVDDRECPVR Unmodified 1625.8672 0.86715869 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 2 By matching By MS/MS 5 0 2 1 1 34.386 34.451 4 4.6928E-09 7227 20211116_3444_TMUAki_TMT10x_S_F5 130.47 110.09 297870 486990 3032.2 527650 334600 283530 334670 361830 336730 315940 430810 277370 454570 28036 531760 321010 305660 339530 362560 345810 310450 412680 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 297870 486990 3032.2 527650 334600 283530 334670 361830 336730 315940 430810 277370 454570 28036 531760 321010 305660 339530 362560 345810 310450 412680 1 1 1 1 1 1 1 1 1 1 1 64454000 47968000 16486000 16052 157 14734 82525;82526 99887 99887 1 RIVLVDDSIVR Unmodified 1283.7561 0.75613491 1524 Q06203 PPAT Amidophosphoribosyltransferase yes yes 0 0 0 1 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 47.298 47.437 3 8.6735E-09 12762 20211116_3445_TMUAki_TMT10x_S_F6 156.36 119.52 2228200 3266300 11609 3861800 3246500 2881400 2259600 2547300 2616400 2370000 2897700 2074700 3050000 208010 3882900 3088700 2988300 2354700 2601500 2656100 2322000 2786600 2 2 1 2 2 2 2 2 2 2 2 1010700 1495800 0 1617800 2186600 2021300 1257100 1156700 1202100 1111700 1281700 941090 1396200 98467 1647800 2073100 2014900 1322100 1218300 1228100 1087600 1234000 1 1 0 1 1 1 1 1 1 1 1 1217400 1770400 11609 2244000 1059900 860080 1002500 1390600 1414400 1258300 1616000 1133600 1653800 109550 2235100 1015600 973480 1032600 1383200 1428000 1234300 1552600 1 1 1 1 1 1 1 1 1 1 1 405930000 240150000 165780000 16053 1524 14735 82527;82528;82529 99888;99889 99889 2 RIVPGQFLAVDPK Unmodified 1438.8296 0.8296342 1798 Q15393;Q15393-2 SF3B3 Splicing factor 3B subunit 3 yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 55.974 55.801 3 4.9823E-09 16647 20211116_3440_TMUAki_TMT10x_S_F2 125.03 97.369 15130000 24659000 122880 29236000 20420000 19177000 14934000 13741000 13195000 13061000 19384000 14088000 23026000 1403300 29352000 19447000 20035000 15381000 14225000 13719000 12784000 18508000 3 3 2 3 3 3 3 3 3 3 3 6012900 9493200 110180 11255000 12090000 12256000 7811000 5663700 5438400 5166300 7458900 5599500 8864800 686320 11372000 11492000 12275000 8073300 6076200 5708200 5066200 7132700 1 1 1 1 1 1 1 1 1 1 1 9116900 15165000 12700 17981000 8329800 6921600 7122500 8077700 7756800 7894200 11926000 8488500 14161000 716990 17979000 7954900 7759400 7307500 8149000 8011300 7717500 11375000 2 2 1 2 2 2 2 2 2 2 2 1316500000 546550000 769920000 16054 1798 14736 82530;82531;82532 99890;99891;99892 99892 3 RIVSQLLTLMDGLK Oxidation (M) 1601.9175 0.91746293 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 1 1 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 70.902 70.964 3 0.00010619 22979 20211116_3431_TMUAki_TMT10x_P_F4 87.519 66.566 3010600 4495700 51880 4497800 2967900 6111200 3281200 3222000 3087100 3149300 3802400 2803500 4194900 297350 4612500 2856800 6061300 3305900 3419500 3174400 3078700 3645900 1 1 1 1 1 1 1 1 1 1 1 3010600 4495700 51880 4497800 2967900 6111200 3281200 3222000 3087100 3149300 3802400 2803500 4194900 297350 4612500 2856800 6061300 3305900 3419500 3174400 3078700 3645900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 576350000 576350000 0 16055 1235 14737 82533;82534;82535 99893;99894;99895 99893 1671 3 RIYIPLPEEAAR Unmodified 1426.7932 0.79324869 3187 Q9UN37 VPS4A Vacuolar protein sorting-associated protein 4A yes yes 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 50.973 51.465 3 7.932E-08 14390 20211116_3445_TMUAki_TMT10x_S_F6 107.99 85.461 1281200 2153900 25227 2366700 1267000 1129700 1075100 1750600 1666200 1560700 1810700 1193200 2010600 129540 2380900 1211600 1241100 1118900 1742900 1674300 1532100 1742300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1281200 2153900 25227 2366700 1267000 1129700 1075100 1750600 1666200 1560700 1810700 1193200 2010600 129540 2380900 1211600 1241100 1118900 1742900 1674300 1532100 1742300 1 1 1 1 1 1 1 1 1 1 1 238800000 0 238800000 16056 3187 14738 82536;82537 99896;99897 99896 2 RIYIPLPEPHAR Unmodified 1460.8252 0.82521752 325 O75351 VPS4B Vacuolar protein sorting-associated protein 4B yes yes 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 43.059 42.973 4 0.00016578 11394 20211116_3440_TMUAki_TMT10x_S_F2 88.734 73.195 822920 1367500 27526 1457500 735730 732290 734810 977760 937090 1290200 1109000 766420 1276300 92658 1469700 707100 796260 751660 991080 950570 1247200 1064400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 822920 1367500 27526 1457500 735730 732290 734810 977760 937090 1290200 1109000 766420 1276300 92658 1469700 707100 796260 751660 991080 950570 1247200 1064400 2 2 2 2 2 2 2 2 2 2 2 63501000 0 63501000 16057 325 14739 82538;82539 99898;99899 99898 2 RKADGYNQPDSK Unmodified 1377.6637 0.66369108 271;211 O60506;O60506-2;O43390;O43390-2;O43390-3;O43390-4 SYNCRIP;HNRNPR Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R no no 0 0 0 2 By MS/MS 5 0 1 1 27.671 27.599 3 0.097361 5746 20211116_3433_TMUAki_TMT10x_P_F5 45.79 22.911 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16058 271;211 14740 82540 99900 99900 1 RKADTTTPTTSAITASR Unmodified 1776.933 0.93298965 1766 Q15059;Q15059-2 BRD3 Bromodomain-containing protein 3 yes no 0 0 0 2 By MS/MS By MS/MS 1 0 2 1 1 29.443 29.484 3 6.7545E-15 7744 20211116_3439_TMUAki_TMT10x_S_F1 142.58 117.78 82851 114620 0 120850 109670 85457 77626 58466 75759 61206 84820 77129 106970 5491.7 122320 104230 88634 80357 60889 77475 59664 81542 2 2 0 2 2 2 2 2 2 2 2 27032 36970 0 39684 64807 43148 19520 27689 27695 21017 30713 25163 34507 2022.9 40344 60953 43396 22421 28733 27925 20801 29534 1 1 0 1 1 1 1 1 1 1 1 55820 77648 0 81167 44861 42308 58106 30777 48064 40190 54107 51965 72467 3468.8 81974 43282 45239 57936 32156 49550 38864 52008 1 1 0 1 1 1 1 1 1 1 1 7721500 4203400 3518100 16059 1766 14741 82541;82542 99901;99902 99902 2 RKASGPPVSELITK Unmodified 1481.8566 0.85657723 606;694 P10412;P16402 HIST1H1E;HIST1H1D Histone H1.4;Histone H1.3 no no 0 0 0 2 By MS/MS By MS/MS 2.44 2.06 3 4 1 1 4 5 39.467 39.419 3;4 4.3808E-19 11311 20211116_3429_TMUAki_TMT10x_P_F2 173.44 133.78 7860400 13446000 61622 12088000 33983000 27211000 13817000 23905000 29670000 17531000 18510000 7318900 12541000 741520 12654000 32078000 26713000 15561000 24281000 29095000 17384000 18202000 11 11 6 11 11 11 11 11 11 11 11 4838000 8464900 25894 7338700 30278000 24236000 11029000 17135000 21509000 12416000 12520000 4504800 7894500 478680 7818900 28549000 23489000 12518000 17638000 21104000 12321000 12356000 4 4 2 4 4 4 4 4 4 4 4 3022400 4980600 35728 4749600 3704700 2974200 2788300 6770500 8161500 5114700 5990100 2814200 4646600 262840 4835100 3529400 3224700 3042500 6642600 7990800 5063500 5845700 7 7 4 7 7 7 7 7 7 7 7 5001000000 3849800000 1151200000 16060 606;694 14742 82543;82544;82545;82546;82547;82548;82549;82550;82551 99903;99904;99905;99906;99907;99908;99909;99910;99911;99912;99913 99906 11 RKATGPPVSELITK Unmodified 1495.8722 0.8722273 693 P16401 HIST1H1B Histone H1.5 yes yes 0 0 0 2 By MS/MS By MS/MS 3 2.57 3 4 1 2 5 5 40.217 40.18 3;4 2.3003E-23 11587 20211116_3429_TMUAki_TMT10x_P_F2 191.51 147.83 13078000 20326000 275910 22520000 23677000 20113000 14925000 22996000 26137000 19234000 23097000 12179000 18974000 1467000 22783000 22498000 20703000 15943000 23123000 25991000 18940000 22375000 16 16 13 16 16 16 16 16 16 16 16 3747800 5234100 75803 5809800 14284000 12025000 6411100 7495800 8868200 6175000 6995300 3490000 4886200 509680 5979200 13502000 11765000 6990800 7810200 8847900 6085200 6806100 4 4 2 4 4 4 4 4 4 4 4 9330100 15091000 200110 16710000 9393100 8087900 8513500 15500000 17268000 13059000 16102000 8688700 14088000 957320 16803000 8996300 8937800 8952700 15313000 17143000 12855000 15569000 12 12 11 12 12 12 12 12 12 12 12 4469000000 3395500000 1073500000 16061 693 14743 82552;82553;82554;82555;82556;82557;82558;82559;82560;82561 99914;99915;99916;99917;99918;99919;99920;99921;99922;99923;99924;99925;99926;99927;99928;99929 99916 16 RKDGVFLYFEDNAGVIVNNK Unmodified 2297.1804 0.18043057 1369 P62829 RPL23 60S ribosomal protein L23 yes yes 0 0 0 2 By MS/MS By MS/MS 8 0 2 1 1 67.657 67.656 4 1.2778E-12 21314 20211116_3436_TMUAki_TMT10x_P_F8 128.79 113.86 20151000 36173000 0 30273000 24061000 36821000 26971000 29515000 30554000 30940000 29782000 18759000 33732000 1255100 31399000 23113000 36943000 27317000 30420000 30899000 30159000 28753000 2 2 0 2 2 2 2 2 2 2 2 9915500 15465000 0 13018000 10651000 20220000 11594000 10559000 11199000 12118000 12597000 9230400 14421000 585270 13561000 10220000 19938000 11699000 11270000 11460000 11771000 12109000 1 1 0 1 1 1 1 1 1 1 1 10236000 20709000 0 17255000 13410000 16601000 15377000 18956000 19355000 18822000 17184000 9528700 19311000 669780 17837000 12893000 17005000 15618000 19150000 19439000 18388000 16644000 1 1 0 1 1 1 1 1 1 1 1 1617600000 1014900000 602720000 16062 1369 14744 82562;82563 99930 99930 1 RKDPELWGSVLLESNPYR Unmodified 2158.1171 0.11710203 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 2 By MS/MS By MS/MS 3.8 3.43 3 2 2 3 62.629 62.561 3;4 2.3781E-40 19122 20211116_3428_TMUAki_TMT10x_P_F1 204.23 188.64 19763000 32702000 386170 33021000 23737000 28963000 26230000 17505000 17021000 18231000 23936000 18404000 30516000 1744800 33604000 22843000 29498000 26191000 18398000 17964000 17776000 22876000 8 8 5 8 8 8 8 8 8 8 8 10253000 16597000 196310 16843000 12929000 19913000 14813000 9206600 8021800 9232300 11612000 9547200 15488000 1019400 17211000 12453000 19856000 14717000 9901700 8585400 9015700 11091000 4 4 3 4 4 4 4 4 4 4 4 9510500 16105000 189860 16179000 10808000 9050000 11417000 8298200 8999000 8999100 12324000 8856600 15028000 725350 16393000 10390000 9642300 11474000 8496000 9378700 8760100 11786000 4 4 2 4 4 4 4 4 4 4 4 5258300000 2599800000 2658500000 16063 1471 14745 82564;82565;82566;82567;82568 99931;99932;99933;99934;99935;99936;99937;99938 99931 8 RKDQMQPGGTAISVTVPYR Oxidation (M) 2119.0844 0.084421692 1990 Q6P1J9 CDC73 Parafibromin yes yes 0 0 1 2 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 37.94 37.83 4 2.3159E-08 10634 20211116_3429_TMUAki_TMT10x_P_F2 108.14 98.023 997550 1779400 23108 1886200 2497600 2645000 1518700 1846700 1967300 1530600 1779200 928970 1660800 122390 1928100 2371400 2629800 1605500 1908500 1975100 1507900 1722100 3 3 2 3 3 3 3 3 3 3 3 799250 1429600 14722 1502400 2274300 2414600 1296800 1487200 1594900 1276900 1450800 744270 1334200 97786 1541200 2156800 2382700 1375800 1552600 1604400 1255700 1404000 2 2 1 2 2 2 2 2 2 2 2 198300 349850 8386.1 383840 223260 230380 221840 359570 372390 253760 328430 184700 326580 24606 386890 214540 247070 229760 355900 370700 252200 318180 1 1 1 1 1 1 1 1 1 1 1 329810000 289340000 40476000 16064 1990 14746 82569;82570;82571 99939;99940;99941 99940 2541 3 RKDQMQPGGTAISVTVPYR Unmodified 2103.0895 0.089507069 1990 Q6P1J9 CDC73 Parafibromin yes yes 0 0 0 2 By MS/MS By MS/MS 2 0 2 1 1 42.21 42.085 4 5.4001E-08 12420 20211116_3429_TMUAki_TMT10x_P_F2 102.59 86.955 1420400 2335600 47845 2251600 1961700 1993300 1483200 1849000 1707700 1509900 2188900 1322900 2179100 169930 2299100 1871900 2043300 1536400 1877000 1744600 1488600 2096600 2 2 2 2 2 2 2 2 2 2 2 737850 1104800 40584 1043500 1403600 1530500 966620 924220 814180 692460 1214400 687310 1030700 108320 1076200 1337300 1515500 998620 963350 849160 685840 1159100 1 1 1 1 1 1 1 1 1 1 1 682580 1230800 7260.7 1208000 558130 462830 516560 924740 893540 817470 974470 635610 1148400 61615 1222900 534560 527850 537820 913690 895400 802810 937530 1 1 1 1 1 1 1 1 1 1 1 123400000 97300000 26104000 16065 1990 14746 82572;82573 99942;99943 99942 2 RKEEIEAQIK Unmodified 1242.6932 0.6932003 75 O00233;O00233-2;O00233-3 PSMD9 26S proteasome non-ATPase regulatory subunit 9 yes no 0 0 0 2 By MS/MS 5 0 1 1 34.418 34.37 3 0.00035279 8449 20211116_3433_TMUAki_TMT10x_P_F5 86.114 51.154 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16066 75 14747 82574 99944 99944 1 RKELEQVCNPIISGLYQGAGGPGPGGFGAQGPK Unmodified 3338.683 0.68299332 596 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 0 2 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 65.048 64.726 4;5 7.138E-59 23234 20211116_3441_TMUAki_TMT10x_S_F3 218.16 209.43 18988000 33260000 442860 22310000 34455000 39920000 26686000 31291000 27833000 29242000 28734000 17682000 30994000 2070600 23797000 32860000 39388000 27510000 32189000 28297000 28644000 27691000 7 7 3 7 7 7 7 7 7 7 7 10334000 15830000 219310 11774000 13353000 23897000 12851000 15182000 16212000 13578000 13193000 9623900 14756000 1081400 12479000 12803000 23402000 13165000 15828000 16239000 13327000 12820000 2 2 1 2 2 2 2 2 2 2 2 8653400 17430000 223540 10536000 21102000 16023000 13835000 16109000 11621000 15665000 15541000 8058000 16238000 989160 11317000 20057000 15986000 14345000 16361000 12058000 15317000 14871000 5 5 2 5 5 5 5 5 5 5 5 4570900000 2969200000 1601700000 16067 596 14748 82575;82576;82577;82578 99945;99946;99947;99948;99949;99950;99951 99951 7 RKGDEVDGVDEVAK Unmodified 1515.7529 0.75290002 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 2 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 33.682 33.575 4 5.3721E-09 10429 20211116_3441_TMUAki_TMT10x_S_F3 126.48 90.039 3289800 5029100 3052.8 5083200 6449400 5916200 3996000 2947000 3694300 3012800 4392600 3063000 4692900 308670 5194300 6121800 5908900 4172300 3148100 3796300 2939800 4215700 4 4 2 4 4 4 4 4 4 4 4 2674600 3940000 0 4097300 5698300 5208700 3167700 2262900 2769200 2297300 3472900 2490200 3677000 252920 4185400 5399400 5171600 3333200 2450400 2859600 2242300 3328400 2 2 0 2 2 2 2 2 2 2 2 615160 1089100 3052.8 985880 751140 707470 828250 684100 925010 715530 919690 572800 1015800 55751 1008900 722350 737370 839100 697660 936620 697530 887360 2 2 2 2 2 2 2 2 2 2 2 69380000 41150000 28230000 16068 586 14749 82579;82580 99952;99953;99954;99955 99954 4 RKGEGYSNPNEGATVEIHLEGR Unmodified 2412.1782 0.17819874 1635 Q13451;Q13451-2 FKBP5 Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed yes no 0 0 0 2 By MS/MS By MS/MS 4.5 1.12 1 1 3 5 2 7 5 34.523 34.56 3;4;5 4.359E-68 8508 20211116_3433_TMUAki_TMT10x_P_F5 252.37 242.71 11294000 16828000 216120 20096000 19865000 17760000 12349000 11185000 11509000 9504600 13240000 10517000 15714000 1212500 20236000 18869000 18089000 12893000 11654000 11806000 9352000 12719000 18 18 11 18 18 18 18 18 18 18 18 9437300 13934000 200280 16918000 17941000 16127000 10390000 9521500 9574700 7709800 10868000 8788400 13013000 1066200 17037000 17024000 16329000 10908000 9959900 9822200 7604500 10444000 11 11 8 11 11 11 11 11 11 11 11 1857000 2894400 15838 3177800 1923800 1633600 1959400 1663900 1934000 1794800 2372400 1729000 2701800 146330 3198700 1845400 1760100 1984900 1694100 1984200 1747500 2275000 7 7 3 7 7 7 7 7 7 7 7 2647200000 2200400000 446870000 16069 1635 14750 82581;82582;82583;82584;82585;82586;82587;82588;82589;82590;82591;82592 99956;99957;99958;99959;99960;99961;99962;99963;99964;99965;99966;99967;99968;99969;99970;99971;99972;99973 99966 18 RKGFSEGLWEIENNPTVK Unmodified 2103.0749 0.074902863 1165 P51858;P51858-3;P51858-2 HDGF Hepatoma-derived growth factor yes no 0 0 0 2 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 53.454 53.838 4 2.5811E-17 15250 20211116_3447_TMUAki_TMT10x_S_F8 152.37 121.84 18569000 32707000 363400 26288000 28217000 32424000 28062000 18830000 16557000 18853000 24537000 17292000 30495000 1988800 27363000 27072000 32347000 28117000 19832000 17631000 18412000 23423000 4 4 3 4 4 4 4 4 4 4 4 11187000 19053000 60060 14431000 19504000 25712000 20452000 12440000 10804000 11579000 14753000 10417000 17762000 1075400 15217000 18727000 25200000 20397000 13292000 11554000 11345000 14109000 2 2 1 2 2 2 2 2 2 2 2 7382000 13654000 303340 11857000 8712900 6711800 7610100 6390700 5752900 7273700 9784000 6875700 12734000 913360 12146000 8345000 7147700 7719400 6540200 6076900 7067500 9313500 2 2 2 2 2 2 2 2 2 2 2 1750700000 642520000 1108200000 16070 1165 14751 82593;82594;82595 99974;99975;99976;99977 99977 4 RKGGPGSTLSFVGK Unmodified 1389.7728 0.7728476 2623 Q9BQ61 C19orf43 Uncharacterized protein C19orf43 yes yes 0 0 0 2 By MS/MS 5 0 1 1 37.668 37.815 4 0.030838 8676 20211116_3444_TMUAki_TMT10x_S_F5 51.092 28.618 847420 1346500 5937.8 1664500 797390 569730 649320 1030000 1308900 848600 1238500 789080 1257600 75090 1659300 761210 658280 686790 1018600 1300200 836260 1196900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 847420 1346500 5937.8 1664500 797390 569730 649320 1030000 1308900 848600 1238500 789080 1257600 75090 1659300 761210 658280 686790 1018600 1300200 836260 1196900 1 1 1 1 1 1 1 1 1 1 1 66172000 0 66172000 16071 2623 14752 82596 99978 99978 1 RKGPELPLVPVK Unmodified 1331.8289 0.82890592 2436 Q96DI7;Q96DI7-2 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes no 0 0 0 2 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 44.902 44.703 4 0.0050923 13773 20211116_3430_TMUAki_TMT10x_P_F3 65.563 29.779 3260900 5017100 43114 6618400 5866800 5180000 3515400 5412100 4825500 4095000 4996500 3036200 4687400 299120 6617200 5565700 5371000 3729400 5451500 4857900 4053700 4814600 4 4 2 4 4 4 4 4 4 4 4 1746300 2712400 30125 3649700 4579700 3930400 2404800 2726500 2360200 2091800 2672200 1625900 2534400 176390 3661300 4336100 3959700 2551700 2813900 2414100 2069100 2568100 2 2 1 2 2 2 2 2 2 2 2 1514600 2304700 12989 2968700 1287000 1249600 1110600 2685600 2465300 2003300 2324300 1410300 2153000 122730 2956000 1229700 1411300 1177700 2637600 2443700 1984600 2246500 2 2 1 2 2 2 2 2 2 2 2 599520000 431720000 167790000 16072 2436 14753 82597;82598;82599 99979;99980;99981;99982 99980 4 RKGQVIQF Unmodified 974.56615 0.56614929 1450 Q969Q0;P83881 RPL36AL;RPL36A 60S ribosomal protein L36a-like;60S ribosomal protein L36a yes no 0 0 0 2 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 37.334 37.202 3 0.024346 11994 20211116_3441_TMUAki_TMT10x_S_F3 69.998 58.151 2135200 3210600 11482 3902500 5087000 3302700 2580700 2421000 2898700 2258100 3229300 1988100 2998400 221090 3923400 4814800 3381800 2758600 2501100 2946700 2212000 3104900 4 4 2 4 4 4 4 4 4 4 4 1445800 2111100 0 2543000 4395000 2763200 1888900 1591200 1879500 1519900 2182000 1346200 1971500 153200 2567000 4150600 2775000 2046800 1674800 1923200 1487300 2095500 2 2 0 2 2 2 2 2 2 2 2 689400 1099500 11482 1359500 691950 539540 691750 829750 1019200 738160 1047300 641990 1026900 67893 1356300 664170 606750 711820 826240 1023500 724700 1009400 2 2 2 2 2 2 2 2 2 2 2 164060000 111760000 52304000 16073 1450 14754 82600;82601;82602 99983;99984;99985;99986 99986 4 RKGTDDFDFAGSFQGPR Unmodified 1899.8864 0.88637381 1508 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 0 0 0 2 By MS/MS By matching 7 0 2 1 1 45.708 46.228 4 4.1153E-15 13795 20211116_3435_TMUAki_TMT10x_P_F7 145.69 130.05 5931300 8846300 363580 9874800 10085000 12636000 7713200 7179700 7537300 7388400 8280400 5525400 8258400 888760 10043000 9632400 12579000 7942400 7581500 7702000 7207300 7964800 2 2 2 2 2 2 2 2 2 2 2 5931300 8846300 363580 9874800 10085000 12636000 7713200 7179700 7537300 7388400 8280400 5525400 8258400 888760 10043000 9632400 12579000 7942400 7581500 7702000 7207300 7964800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 978100000 479340000 498760000 16074 1508 14755 82603;82604 99987;99988 99987 2 RKGVEGLIDIENPNR Unmodified 1708.922 0.92203104 1634 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein yes yes 0 0 0 2 By MS/MS By MS/MS 5.75 0.661 3 4 1 4 4 43.269 43.45 3;4 7.6417E-28 10810 20211116_3434_TMUAki_TMT10x_P_F6 178.85 166.28 8240600 13613000 105990 14614000 13799000 14024000 8948000 13538000 14892000 12455000 13817000 7673300 12706000 827140 14829000 13114000 14313000 9514000 13757000 14852000 12209000 13362000 9 9 7 9 9 9 9 9 9 9 9 3432900 5299300 16081 5725600 9007700 9711000 4799000 5725600 6156400 5230600 5661100 3196200 4946400 344990 5870500 8530000 9557600 5129900 6007800 6186100 5128800 5476400 3 3 1 3 3 3 3 3 3 3 3 4807700 8313600 89907 8888700 4791400 4313300 4149000 7812500 8735500 7224700 8156100 4477100 7759600 482150 8958900 4583500 4755000 4384100 7749100 8665600 7080300 7885800 6 6 6 6 6 6 6 6 6 6 6 2220500000 1023200000 1197300000 16075 1634 14756 82605;82606;82607;82608;82609;82610;82611;82612 99989;99990;99991;99992;99993;99994;99995;99996;99997;99998 99992 10 RKIEATGVIQSCAK Unmodified 1559.8454 0.84536062 1776 Q15154;Q15154-4;Q15154-2;Q15154-5 PCM1 Pericentriolar material 1 protein yes no 0 0 0 2 By MS/MS 2 0 1 1 34.679 34.456 4 0.0025548 9321 20211116_3429_TMUAki_TMT10x_P_F2 68.513 47.85 321400 466680 1920.5 586400 687860 739720 409470 376440 374680 294700 429040 299270 435910 33568 592060 652670 735950 428830 398620 384630 291190 412190 1 1 1 1 1 1 1 1 1 1 1 321400 466680 1920.5 586400 687860 739720 409470 376440 374680 294700 429040 299270 435910 33568 592060 652670 735950 428830 398620 384630 291190 412190 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23804000 23804000 0 16076 1776 14757 82613 99999 99999 1 RKMCLFAGFQR Oxidation (M) 1428.7118 0.71184403 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 1 2 By MS/MS 6 0 1 1 36.724 36.712 4 0.069831 8092 20211116_3434_TMUAki_TMT10x_P_F6 40.039 28.827 365830 550530 0 550500 559000 510810 338660 261610 274770 262750 369250 340560 513700 24427 561010 529890 517230 353060 278590 285680 256570 353280 1 1 0 1 1 1 1 1 1 1 1 365830 550530 0 550500 559000 510810 338660 261610 274770 262750 369250 340560 513700 24427 561010 529890 517230 353060 278590 285680 256570 353280 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26901000 26901000 0 16077 1474 14758 82614 100000 100000 1996 1 RKNPDLGFSDYAAAQLR Unmodified 1920.9806 0.98060855 453 O95926;O95926-2 SYF2 Pre-mRNA-splicing factor SYF2 yes no 0 0 0 2 By MS/MS 8 0 1 1 46.458 46.577 4 0.099132 12744 20211116_3436_TMUAki_TMT10x_P_F8 36.637 15.974 1677500 2570900 27858 2700000 3103500 3476000 2096000 1794800 1624400 1500700 2045500 1562100 2399400 185010 2756900 2952100 3455500 2164200 1900900 1688200 1477700 1960200 1 1 1 1 1 1 1 1 1 1 1 1677500 2570900 27858 2700000 3103500 3476000 2096000 1794800 1624400 1500700 2045500 1562100 2399400 185010 2756900 2952100 3455500 2164200 1900900 1688200 1477700 1960200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 231020000 231020000 0 16078 453 14759 82615 100001 100001 1 RKPADLQNLAPGTHPPFITFNSEVK Unmodified 2776.466 0.4660479 3342 Q9Y696 CLIC4 Chloride intracellular channel protein 4 yes yes 0 0 0 2 By MS/MS By MS/MS 2.67 0.471 2 4 3 3 57.085 56.796 4;5 8.1781E-23 18868 20211116_3430_TMUAki_TMT10x_P_F3 155.11 135.22 63876000 110990000 233160 109590000 91382000 136570000 78088000 99812000 103030000 88150000 85269000 59470000 103560000 3982300 112300000 87250000 136640000 80675000 102990000 103100000 86573000 82806000 9 9 2 9 9 9 9 9 9 9 9 43385000 75352000 58594 73899000 66235000 118190000 59814000 63631000 67042000 59190000 56049000 40393000 70306000 2363100 76154000 63321000 116440000 61231000 67316000 67497000 57991000 54409000 5 5 1 5 5 5 5 5 5 5 5 20490000 35641000 174570 35692000 25146000 18385000 18274000 36181000 35990000 28960000 29220000 19077000 33257000 1619100 36150000 23929000 20197000 19444000 35672000 35598000 28581000 28397000 4 4 1 4 4 4 4 4 4 4 4 14245000000 8000600000 6244500000 16079 3342 14760 82616;82617;82618;82619;82620;82621 100002;100003;100004;100005;100006;100007;100008;100009;100010 100005 9 RKPFDEIGGPAFR Unmodified 1488.7837 0.78374664 208 O43318;O43318-4;O43318-3;O43318-2 MAP3K7 Mitogen-activated protein kinase kinase kinase 7 yes no 0 0 0 2 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 42.916 42.863 4 0.00023601 13154 20211116_3439_TMUAki_TMT10x_S_F1 89.992 61.665 2405500 3821500 28573 4306100 3747600 3299700 2769800 2989400 3008700 2711800 3398700 2239800 3567600 224940 4343700 3569200 3416700 2868000 3046700 3064200 2659900 3266500 3 3 1 3 3 3 3 3 3 3 3 933390 1401800 0 1665900 2395400 2086700 1370700 1120700 1172200 1005100 1289200 868970 1309000 84648 1687100 2270200 2078100 1437700 1184700 1205300 986350 1240000 1 1 0 1 1 1 1 1 1 1 1 1472100 2419700 28573 2640200 1352300 1213100 1399100 1868700 1836500 1706700 2109500 1370800 2258700 140290 2656500 1299100 1338600 1430300 1862000 1858900 1673600 2026500 2 2 1 2 2 2 2 2 2 2 2 174080000 104840000 69240000 16080 208 14761 82622;82623;82624 100011;100012;100013 100012 3 RKPLFCGNSEADQLGK Unmodified 1818.9047 0.90466641 632 P11802;P11802-2 CDK4 Cyclin-dependent kinase 4 yes no 0 0 0 2 By MS/MS 8 0 1 1 39.406 39.749 4 3.9852E-07 9332 20211116_3447_TMUAki_TMT10x_S_F8 107.69 81.252 643320 1114400 5153.3 1501700 463800 436080 442520 588180 607560 483620 882170 599040 1041300 55624 1488700 444490 513400 455090 587220 620610 476640 842490 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 643320 1114400 5153.3 1501700 463800 436080 442520 588180 607560 483620 882170 599040 1041300 55624 1488700 444490 513400 455090 587220 620610 476640 842490 1 1 1 1 1 1 1 1 1 1 1 54368000 0 54368000 16081 632 14762 82625 100014 100014 1 RKQELAETLANLER Unmodified 1669.9111 0.911132 2850 Q9HAF1;Q9HAF1-2;Q9HAF1-4;Q9HAF1-3 MEAF6 Chromatin modification-related protein MEAF6 yes no 0 0 0 2 By MS/MS 7 0 1 1 48.571 49.054 4 3.665E-06 15501 20211116_3446_TMUAki_TMT10x_S_F7 111.43 79.794 931190 1459000 5307 1667700 910530 752840 812220 1336700 1171900 971100 1139700 867070 1362200 81858 1673000 870900 836500 840150 1318600 1175400 963490 1100400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 931190 1459000 5307 1667700 910530 752840 812220 1336700 1171900 971100 1139700 867070 1362200 81858 1673000 870900 836500 840150 1318600 1175400 963490 1100400 1 1 1 1 1 1 1 1 1 1 1 181380000 0 181380000 16082 2850 14763 82626 100015 100015 1 RKQNDVFGEAEQ Unmodified 1419.6743 0.67425577 884 P31150 GDI1 Rab GDP dissociation inhibitor alpha yes yes 0 0 0 2 By MS/MS 4.5 0.5 1 1 2 32.924 32.91 3 0.046893 7559 20211116_3431_TMUAki_TMT10x_P_F4 54.343 36.907 862430 1003100 0 1685600 3795100 1736800 1124000 736970 869590 653670 1325000 802860 938580 93437 1672100 3570600 1743700 1271900 797270 911940 641840 1264100 1 1 0 1 1 1 1 1 1 1 1 862430 1003100 0 1685600 3795100 1736800 1124000 736970 869590 653670 1325000 802860 938580 93437 1672100 3570600 1743700 1271900 797270 911940 641840 1264100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 60424000 60424000 0 16083 884 14764 82627;82628 100016 100016 1 RKQSSSEISLAVER Unmodified 1588.8533 0.85328277 1077 P48634;P48634-2;P48634-3;P48634-4 PRRC2A Protein PRRC2A yes no 0 0 0 2 By MS/MS 6 0 1 1 31.734 31.708 4 0.035945 6230 20211116_3434_TMUAki_TMT10x_P_F6 48.823 28.442 13960 34373 681.58 22987 31860 25747 21166 23580 23341 17481 20127 13003 32031 2043.3 24296 30322 26010 22096 23902 23536 17324 19515 1 1 1 1 1 1 1 1 1 1 1 13960 34373 681.58 22987 31860 25747 21166 23580 23341 17481 20127 13003 32031 2043.3 24296 30322 26010 22096 23902 23536 17324 19515 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1067000 1067000 0 16084 1077 14765 82629 100017 100017 1 RKQYPISLVLAPTR Unmodified 1640.9726 0.97261004 104 O00571;O00571-2;O15523;O15523-2;O15523-3 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 0 2 By MS/MS 7 0 1 1 46.636 47.126 4 0.0021157 14666 20211116_3446_TMUAki_TMT10x_S_F7 71.279 53.693 1794200 3168000 41300 2851900 1995000 2062200 1773400 3826900 3369100 3595900 3180000 1670900 2954900 190060 2919900 1909800 2189200 1859800 3795000 3351000 3521500 3073500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1794200 3168000 41300 2851900 1995000 2062200 1773400 3826900 3369100 3595900 3180000 1670900 2954900 190060 2919900 1909800 2189200 1859800 3795000 3351000 3521500 3073500 1 1 1 1 1 1 1 1 1 1 1 190480000 0 190480000 16085 104 14766 82630 100018 100018 1 RKSDGIYIINLK Unmodified 1418.8245 0.82454882 565 P08865 RPSA 40S ribosomal protein SA yes yes 0 0 0 2 By MS/MS 3 0 1 1 49.12 49.071 4 0.00040297 15599 20211116_3430_TMUAki_TMT10x_P_F3 85.258 39.978 925420 1345200 12967 1910000 2256400 1826400 997760 824800 783900 674460 1192600 861750 1257300 107450 1907400 2132600 1843300 1071300 884650 821340 664900 1137800 1 1 1 1 1 1 1 1 1 1 1 925420 1345200 12967 1910000 2256400 1826400 997760 824800 783900 674460 1192600 861750 1257300 107450 1907400 2132600 1843300 1071300 884650 821340 664900 1137800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 419230000 419230000 0 16086 565 14767 82631 100019 100019 1 RKSEQEFSFDTPADR Unmodified 1811.8438 0.84384029 2586 Q99590;Q99590-2 SCAF11 Protein SCAF11 yes no 0 0 0 2 By MS/MS 5 0 1 1 35.524 35.484 4 1.1344E-06 8907 20211116_3433_TMUAki_TMT10x_P_F5 115.04 103.27 1684000 2653100 0 3019800 4020600 3742000 2181100 1976300 2054700 1882600 2517700 1567900 2477000 171660 3065600 3808800 3727800 2304700 2095700 2112300 1842600 2414400 2 2 0 2 2 2 2 2 2 2 2 1684000 2653100 0 3019800 4020600 3742000 2181100 1976300 2054700 1882600 2517700 1567900 2477000 171660 3065600 3808800 3727800 2304700 2095700 2112300 1842600 2414400 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100190000 100190000 0 16087 2586 14768 82632 100020;100021 100020 2 RKTDFFIGGEEGMAEK Oxidation (M) 1829.8618 0.86179854 3226 Q9Y266 NUDC Nuclear migration protein nudC yes yes 0 0 1 2 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 43.049 43.301 4 1.6758E-11 11066 20211116_3445_TMUAki_TMT10x_S_F6 139.49 116.01 28303000 41740000 427340 54506000 52942000 50864000 31228000 35604000 44410000 33581000 37871000 26355000 38995000 2896400 54649000 50231000 51699000 33220000 36909000 44370000 32881000 36735000 12 12 7 12 12 12 12 12 12 12 12 18086000 26199000 339480 34969000 46328000 44173000 25135000 23406000 28703000 21358000 24307000 16841000 24479000 2137700 35192000 43904000 43966000 26714000 24785000 28889000 20944000 23584000 6 6 4 6 6 6 6 6 6 6 6 10218000 15541000 87858 19537000 6614500 6691200 6093400 12198000 15706000 12223000 13564000 9513200 14516000 758710 19457000 6326700 7732600 6505700 12125000 15482000 11936000 13151000 6 6 3 6 6 6 6 6 6 6 6 3027200000 1994200000 1033000000 16088 3226 14769 82633;82634;82635;82636;82637;82638 100022;100023;100024;100025;100026;100027;100028;100029;100030;100031;100032;100033 100029 3219 12 RKTDFFIGGEEGMAEK Unmodified 1813.8669 0.86688392 3226 Q9Y266 NUDC Nuclear migration protein nudC yes yes 0 0 0 2 By MS/MS By MS/MS 6 0 2 1 1 48.613 48.739 4 1.1224E-14 13323 20211116_3445_TMUAki_TMT10x_S_F6 141.55 129.78 20449000 33216000 347020 38915000 35374000 31975000 22509000 19196000 19089000 17842000 25060000 19042000 31015000 2219000 39193000 33616000 32715000 23399000 20121000 19781000 17481000 23990000 4 4 3 4 4 4 4 4 4 4 4 13593000 22007000 58490 25149000 30216000 27235000 17623000 12558000 12667000 11754000 16114000 12656000 20546000 1405400 25465000 28659000 27286000 18381000 13485000 13226000 11513000 15438000 2 2 1 2 2 2 2 2 2 2 2 6856200 11209000 288530 13766000 5158700 4740100 4886100 6637700 6421900 6087900 8946200 6385900 10469000 813550 13728000 4957000 5428300 5018000 6636600 6555500 5968400 8551900 2 2 2 2 2 2 2 2 2 2 2 841780000 458190000 383590000 16089 3226 14769 82639;82640 100034;100035;100036;100037 100036 4 RKTVTAMDVVYALK Oxidation (M) 1609.8862 0.8861628 1366 P62805 HIST1H4A Histone H4 yes yes 0 0 1 2 By MS/MS By MS/MS 2.85 0.769 5 5 3 8 5 50.532 50.403 3;4 3.9737E-06 16107 20211116_3430_TMUAki_TMT10x_P_F3 103.4 77.873 65485000 112870000 726510 100760000 106320000 99789000 70336000 93965000 93725000 76745000 87408000 60968000 105280000 5244300 103630000 101000000 101590000 73951000 95315000 94101000 75663000 84515000 12 12 2 12 12 12 12 12 12 12 12 32180000 50972000 212570 47266000 54116000 69970000 37672000 42473000 43060000 36569000 40765000 29960000 47548000 2446600 48820000 51448000 69263000 39239000 44394000 43489000 35958000 39396000 6 6 1 6 6 6 6 6 6 6 6 33305000 61903000 513930 53491000 52203000 29818000 32665000 51492000 50664000 40176000 46643000 31008000 57731000 2797700 54809000 49549000 32324000 34712000 50921000 50612000 39704000 45119000 6 6 1 6 6 6 6 6 6 6 6 6279200000 4470400000 1808900000 16090 1366 14770 82641;82642;82643;82644;82645;82646;82647;82648;82649;82650;82651;82652;82653 100038;100039;100040;100041;100042;100043;100044;100045;100046;100047;100048;100049 100041 1833 12 RKTVTAMDVVYALK Unmodified 1593.8912 0.89124818 1366 P62805 HIST1H4A Histone H4 yes yes 0 0 0 2 By MS/MS By MS/MS 4.5 0.5 4 4 4 4 58.706 58.791 3;4 1.7595E-18 18513 20211116_3442_TMUAki_TMT10x_S_F4 160.8 122.85 43216000 76950000 775740 60029000 78653000 66060000 54618000 37428000 34714000 41284000 55837000 40242000 71739000 4625200 62525000 74848000 66283000 56042000 39614000 36936000 40161000 53210000 9 9 8 9 9 9 9 9 9 9 9 20712000 35506000 175610 27222000 37285000 46219000 34286000 16756000 16166000 19314000 25564000 19284000 33100000 1935900 28640000 35674000 45251000 34373000 18600000 17572000 18758000 24369000 4 4 3 4 4 4 4 4 4 4 4 22504000 41444000 600120 32807000 41369000 19842000 20332000 20672000 18548000 21970000 30273000 20958000 38640000 2689200 33885000 39174000 21032000 21668000 21014000 19364000 21404000 28840000 5 5 5 5 5 5 5 5 5 5 5 5451000000 2825200000 2625800000 16091 1366 14770 82654;82655;82656;82657;82658;82659;82660;82661 100050;100051;100052;100053;100054;100055;100056;100057;100058 100055 9 RKVDWLTEK Unmodified 1173.6506 0.6506072 1277;973;1697 P38919;P60842;P60842-2;Q14240;Q14240-2 EIF4A3;EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed;Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 0 0 0 2 By MS/MS By MS/MS 5 3.46 3 4 4 3 42.109 42.158 3;4 0.00034213 10823 20211116_3436_TMUAki_TMT10x_P_F8 123.29 87.329 13661000 21540000 514260 26273000 29933000 19182000 17882000 11730000 12713000 11868000 20492000 12723000 20117000 1839600 26362000 28430000 19811000 18609000 12307000 13436000 11585000 19527000 9 9 8 9 9 9 9 9 9 9 9 4978600 7588200 80255 9694900 21775000 11242000 7915200 4630300 4948900 4393000 7659600 4636100 7088400 722610 9764700 20535000 11208000 8661600 5034400 5260600 4300300 7305100 4 4 3 4 4 4 4 4 4 4 4 8682200 13952000 434000 16578000 8158200 7940100 9967100 7099800 7764400 7475100 12832000 8087200 13028000 1117000 16598000 7894300 8602800 9947300 7272200 8175200 7285100 12222000 5 5 5 5 5 5 5 5 5 5 5 876990000 625070000 251910000 16092 973;1277;1697 14771 82662;82663;82664;82665;82666;82667;82668 100059;100060;100061;100062;100063;100064;100065 100061 7 RKVEINPPDDMEWK Oxidation (M) 1771.8563 0.85631924 3256 Q9Y2Z0;Q9Y2Z0-2 SUGT1 Suppressor of G2 allele of SKP1 homolog yes no 0 0 1 2 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 42.067 42.163 4 0.00013241 10197 20211116_3434_TMUAki_TMT10x_P_F6 88.087 76.473 3823900 6154800 8077.9 7239100 7869700 6243500 4878700 4391100 4309300 3790000 5538300 3560300 5747100 360390 7293600 7469800 6380200 5087400 4540000 4452500 3726300 5304600 4 4 2 4 4 4 4 4 4 4 4 2503200 3958300 1995.5 4464200 6812000 5357800 3850500 2697800 2786700 2443700 3329900 2330600 3695400 255090 4531800 6456400 5343200 4027600 2869500 2900800 2397100 3195400 2 2 1 2 2 2 2 2 2 2 2 1320700 2196500 6082.4 2774900 1057700 885700 1028200 1693300 1522700 1346300 2208400 1229700 2051700 105300 2761800 1013400 1037000 1059800 1670500 1551700 1329200 2109200 2 2 1 2 2 2 2 2 2 2 2 485050000 444880000 40177000 16093 3256 14772 82669;82670;82671 100066;100067;100068;100069 100066 3234 4 RLAAEATEWQR Unmodified 1329.6789 0.67894722 2553 Q96SB4;Q96SB4-3;Q96SB4-4 SRPK1 SRSF protein kinase 1 yes no 0 0 0 1 By MS/MS 5 0 1 1 35.656 35.832 3 5.9627E-06 7860 20211116_3444_TMUAki_TMT10x_S_F5 117.07 81.395 282870 484490 191.31 557570 256670 225000 260370 304380 316790 276290 380670 263380 452350 23263 558680 246210 251510 265660 304620 322080 270990 365240 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 282870 484490 191.31 557570 256670 225000 260370 304380 316790 276290 380670 263380 452350 23263 558680 246210 251510 265660 304620 322080 270990 365240 1 1 1 1 1 1 1 1 1 1 1 15898000 0 15898000 16094 2553 14773 82672 100070 100070 1 RLAAQFIPK Unmodified 1042.6287 0.62874955 2744 Q9BZZ5-2;Q9BZZ5;Q9BZZ5-3;Q9BZZ5-6 API5 Apoptosis inhibitor 5 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 1.12 2 2 2 2 4 4 44.783 44.781 3 0.0013356 12237 20211116_3431_TMUAki_TMT10x_P_F4 86.205 47.414 11445000 17692000 184510 20885000 21146000 17799000 11748000 12414000 13897000 12117000 15320000 10657000 16520000 1241200 21034000 20049000 18202000 12474000 12884000 14094000 11846000 14734000 7 7 5 7 7 7 7 7 7 7 7 7019800 10650000 131660 12410000 17331000 14830000 8535900 7447500 8334000 7320200 9137700 6537000 9943700 833680 12572000 16404000 14793000 9112000 7940900 8515800 7154500 8790000 4 4 2 4 4 4 4 4 4 4 4 4424700 7042200 52846 8474600 3814600 2968800 3212000 4966000 5562700 4796500 6182100 4120200 6576500 407550 8462000 3645700 3408900 3362300 4943300 5578200 4691500 5944500 3 3 3 3 3 3 3 3 3 3 3 1144000000 640740000 503310000 16095 2744 14774 82673;82674;82675;82676;82677;82678;82679;82680 100071;100072;100073;100074;100075;100076;100077 100072 7 RLAETQEEISAEVAAK Unmodified 1743.9003 0.90029254 2486 Q9Y383;Q96HJ9-2;Q9Y383-3;Q9Y383-2 LUC7L2 Putative RNA-binding protein Luc7-like 2 yes no 0 0 0 1 By MS/MS By MS/MS 3.25 0.968 2 3 2 1 3 5 50.427 50.292 3;4 1.681E-21 14916 20211116_3442_TMUAki_TMT10x_S_F4 174.18 132.64 26776000 38969000 890490 48950000 35792000 33897000 27080000 25585000 30342000 27250000 34037000 24938000 36399000 3174700 49007000 34154000 35274000 28025000 26482000 30856000 26545000 32720000 9 9 8 9 9 9 9 9 9 9 9 12888000 17348000 305510 21555000 23227000 23575000 14892000 11194000 13184000 12298000 15144000 12002000 16203000 1498000 21723000 22080000 23614000 15489000 12039000 13556000 11965000 14548000 3 3 3 3 3 3 3 3 3 3 3 13889000 21621000 584980 27395000 12565000 10322000 12188000 14391000 17158000 14952000 18893000 12936000 20196000 1676700 27285000 12074000 11660000 12536000 14443000 17300000 14580000 18172000 6 6 5 6 6 6 6 6 6 6 6 2769800000 1597900000 1171900000 16096 2486 14775 82681;82682;82683;82684;82685;82686;82687;82688 100078;100079;100080;100081;100082;100083;100084;100085;100086;100087 100085 10 RLAETQEEISAEVSAK Unmodified 1759.8952 0.89520716 2898 Q9NQ29;Q9NQ29-2;Q9NQ29-3 LUC7L Putative RNA-binding protein Luc7-like 1 yes no 0 0 0 1 By MS/MS 3.33 0.471 2 1 3 48.846 48.863 3 2.0898E-15 15588 20211116_3430_TMUAki_TMT10x_P_F3 139.49 110.69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16097 2898 14776 82689;82690;82691 100088;100089;100090 100089 3 RLAGGDWFTSR Unmodified 1264.6313 0.63126874 869 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 45.118 44.905 3 0.00010607 12115 20211116_3440_TMUAki_TMT10x_S_F2 97.957 65.737 2552100 4107200 37.554 4661400 3996400 3710700 2951600 3335100 3379300 2963500 3616300 2376100 3834500 218930 4702000 3804800 3830400 3061800 3398700 3427600 2909600 3481200 3 3 1 3 3 3 3 3 3 3 3 1258300 1907900 0 2131000 2622700 2575100 1821500 1349400 1404200 1303700 1582900 1171500 1781100 118570 2164900 2494300 2568400 1876600 1432500 1453100 1275200 1521500 1 1 0 1 1 1 1 1 1 1 1 1293800 2199300 37.554 2530300 1373700 1135500 1130100 1985700 1975100 1659800 2033400 1204600 2053400 100350 2537100 1310500 1261900 1185200 1966300 1974400 1634400 1959800 2 2 1 2 2 2 2 2 2 2 2 277100000 123050000 154050000 16098 869 14777 82692;82693;82694 100091;100092;100093 100092 3 RLAPEYEAAATR Unmodified 1346.6943 0.69426293 868 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 1 By MS/MS By MS/MS 4.11 0.994 1 1 3 4 4 5 31.034 30.969 2;3 9.1161E-31 7533 20211116_3433_TMUAki_TMT10x_P_F5 267.21 228.63 4152800 6759900 133300 7076200 8784200 6969900 6355700 2971000 3991500 3154900 5295000 3867600 6308900 526600 7194900 8369400 7017200 6500700 3228000 4210400 3073600 5067500 7 7 4 7 7 7 7 7 7 7 7 3196600 5127600 116880 5379500 7735800 6167200 5099500 2253200 3093300 2485500 4041200 2977200 4785600 431920 5482000 7357900 6146200 5248400 2495300 3268400 2417900 3869100 4 4 2 4 4 4 4 4 4 4 4 956200 1632300 16417 1696600 1048400 802670 1256200 717860 898160 669390 1253700 890430 1523300 94682 1712900 1011500 870940 1252300 732700 942000 655760 1198400 3 3 2 3 3 3 3 3 3 3 3 2845400000 2639100000 206380000 16099 868 14778 82695;82696;82697;82698;82699;82700;82701;82702;82703 100094;100095;100096;100097;100098;100099;100100;100101;100102;100103 100097 10 RLAPITSDPTEATAVGAVEASFK Unmodified 2330.2118 0.21179027 670 P14618;P14618-3 PKM Pyruvate kinase PKM yes no 0 0 0 1 By MS/MS By MS/MS 5.86 1.12 1 2 1 3 4 3 69.368 69.543 3;4 3.2956E-36 23852 20211116_3446_TMUAki_TMT10x_S_F7 183.01 159.68 46529000 79338000 369010 71106000 57892000 69589000 54269000 48704000 44925000 49456000 58315000 43323000 74000000 3994400 73099000 55417000 70517000 54947000 50596000 46587000 48270000 55840000 13 13 6 13 13 13 13 13 13 13 13 23674000 38384000 41650 35147000 26419000 45685000 28441000 22825000 21666000 23842000 28606000 22041000 35805000 1860300 36242000 25373000 45377000 28534000 24391000 22584000 23244000 27380000 7 7 3 7 7 7 7 7 7 7 7 22855000 40954000 327360 35959000 31473000 23904000 25827000 25879000 23259000 25613000 29709000 21281000 38196000 2134200 36857000 30044000 25140000 26413000 26205000 24003000 25026000 28460000 6 6 3 6 6 6 6 6 6 6 6 6841700000 3942700000 2899000000 16100 670 14779 82704;82705;82706;82707;82708;82709;82710 100104;100105;100106;100107;100108;100109;100110;100111;100112;100113;100114;100115;100116 100113 13 RLAQQMENRPSVQAALK Oxidation (M) 1955.0371 0.037077568 3289 Q9Y3Y2;Q9Y3Y2-4;Q9Y3Y2-3 CHTOP Chromatin target of PRMT1 protein yes no 0 0 1 2 By MS/MS By MS/MS 1 0 2 1 1 32.994 32.999 4 0.00027335 7158 20211116_3428_TMUAki_TMT10x_P_F1 74.147 55.314 451080 745770 9064.1 806020 861840 753340 550100 588030 635200 489190 693240 420070 696110 51598 817230 819080 766990 576930 603250 644550 481840 666950 2 2 2 2 2 2 2 2 2 2 2 249970 412680 5650.3 443100 668430 572540 345240 330840 346910 267080 384650 232780 385190 31851 451820 633140 569850 367150 346670 354190 263470 369890 1 1 1 1 1 1 1 1 1 1 1 201110 333080 3413.7 362920 193400 180800 204860 257190 288290 222120 308590 187280 310910 19747 365410 185940 197140 209780 256590 290360 218380 297060 1 1 1 1 1 1 1 1 1 1 1 34120000 21639000 12481000 16101 3289 14780 82711;82712 100117 100117 3260 1 RLATLLGLQAPPTR Unmodified 1505.9042 0.90419613 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 1 By MS/MS 7 0 1 1 55.242 55.971 3 0.0023477 17762 20211116_3435_TMUAki_TMT10x_P_F7 63.543 44.228 4905600 7503600 124200 8366400 12141000 13060000 7048400 8059500 7856400 7110800 7874900 4568500 7004900 623800 8544400 11521000 12903000 7440800 8418300 7957900 6983900 7596100 1 1 1 1 1 1 1 1 1 1 1 4905600 7503600 124200 8366400 12141000 13060000 7048400 8059500 7856400 7110800 7874900 4568500 7004900 623800 8544400 11521000 12903000 7440800 8418300 7957900 6983900 7596100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 557070000 557070000 0 16102 1684 14781 82713 100118 100118 1 RLDECEEAFQGTK Unmodified 1581.7093 0.70932065 1307 P61289;P61289-2;P61289-3 PSME3 Proteasome activator complex subunit 3 yes no 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 38.06 38.218 3 0.00074213 10389 20211116_3431_TMUAki_TMT10x_P_F4 69.258 58.152 234150 365570 7869.7 539180 167020 174620 167520 240480 227680 244400 352030 218070 341760 25807 532340 160640 201850 171760 241300 233400 238530 335740 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 234150 365570 7869.7 539180 167020 174620 167520 240480 227680 244400 352030 218070 341760 25807 532340 160640 201850 171760 241300 233400 238530 335740 1 1 1 1 1 1 1 1 1 1 1 17605000 0 17605000 16103 1307 14782 82714;82715 100119;100120 100119 2 RLDEDLAAYCR Unmodified 1380.6456 0.64559818 581 P09543;P09543-2 CNP 2',3'-cyclic-nucleotide 3'-phosphodiesterase yes no 0 0 0 1 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 41.139 41.204 3 2.396E-09 13742 20211116_3441_TMUAki_TMT10x_S_F3 125.82 101.47 8188800 12286000 146.03 12591000 15148000 15874000 8716700 9289100 9393900 7700200 9837500 7623300 11466000 611770 12872000 14352000 15821000 9199000 9729300 9542700 7585900 9476100 3 3 1 3 3 3 3 3 3 3 3 8188800 12286000 146.03 12591000 15148000 15874000 8716700 9289100 9393900 7700200 9837500 7623300 11466000 611770 12872000 14352000 15821000 9199000 9729300 9542700 7585900 9476100 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 366550000 366550000 0 16104 581 14783 82716;82717;82718 100121;100122;100123;100124 100124 4 RLDEEEEDNEGGEWER Unmodified 1990.8141 0.81405631 2588 Q99613;Q99613-2 EIF3C Eukaryotic translation initiation factor 3 subunit C yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 36.164 36.134 3 3.2968E-70 8442 20211116_3428_TMUAki_TMT10x_P_F1 314.17 282.75 623250 943500 5519.3 2213500 2547400 870750 1076000 312910 495910 326130 1338400 580240 885140 70138 2148300 2405000 957350 1150400 346690 559780 317970 1265000 3 3 1 3 3 3 3 3 3 3 3 231480 354040 0 833090 2271400 708630 826700 65573 168160 131280 503150 215460 332150 38363 814190 2141000 715130 893710 101090 211780 125510 475000 1 1 0 1 1 1 1 1 1 1 1 391760 589460 5519.3 1380400 276040 162120 249340 247340 327750 194850 835250 364780 552990 31775 1334100 264070 242220 256740 245600 348010 192470 790030 2 2 1 2 2 2 2 2 2 2 2 243260000 186030000 57230000 16105 2588 14784 82719;82720 100125;100126;100127 100125 3 RLDEELEDAEK Unmodified 1345.6361 0.63613893 1750 Q15008;Q15008-4;Q15008-3;Q15008-2 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 43.392 43.425 3 2.6193E-06 11633 20211116_3440_TMUAki_TMT10x_S_F2 120.84 92.439 1814400 2811100 11022 3464500 2416200 2028900 1895300 1892800 2065600 1614300 2700200 1689400 2625500 158190 3466700 2303600 2152400 1955000 1923000 2116500 1588100 2585100 2 2 1 2 2 2 2 2 2 2 2 577520 844210 0 1021000 1281900 1150800 746490 531670 616980 528440 811860 537640 788400 46813 1031100 1215000 1150500 781180 571710 640260 516240 777140 1 1 0 1 1 1 1 1 1 1 1 1236900 1966900 11022 2443400 1134200 878090 1148800 1361100 1448600 1085800 1888300 1151700 1837100 111380 2435700 1088600 1002000 1173800 1351300 1476200 1071800 1808000 1 1 1 1 1 1 1 1 1 1 1 71176000 21965000 49211000 16106 1750 14785 82721;82722 100128;100129 100129 2 RLDEYTQEEIDAFPR Unmodified 1880.8905 0.89045614 2726 Q9BYD1 MRPL13 39S ribosomal protein L13, mitochondrial yes yes 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 57.001 56.607 3 8.638E-30 19858 20211116_3441_TMUAki_TMT10x_S_F3 202.63 145.68 1084300 2072700 91628 1893400 1392500 1379700 1415500 1595200 1611000 1122800 1343100 1010300 1933400 179610 1936500 1341300 1442100 1440700 1596900 1620900 1116100 1303900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1084300 2072700 91628 1893400 1392500 1379700 1415500 1595200 1611000 1122800 1343100 1010300 1933400 179610 1936500 1341300 1442100 1440700 1596900 1620900 1116100 1303900 1 1 1 1 1 1 1 1 1 1 1 317410000 0 317410000 16107 2726 14786 82723;82724 100130;100131 100131 2 RLDGNQYLFLPPNR Unmodified 1701.8951 0.895088 2440 Q96EB6 SIRT1 NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment yes yes 0 0 0 1 By MS/MS By MS/MS 2.25 0.433 3 1 2 2 54.069 53.857 3 1.1095E-06 15916 20211116_3440_TMUAki_TMT10x_S_F2 95.981 75.554 5201400 7692200 4526.6 7993900 7499600 11649000 6588700 6155500 6151500 5989600 6321100 4842900 7178800 441530 8188500 7166600 11518000 6717300 6530800 6283300 5856600 6092500 2 2 1 2 2 2 2 2 2 2 2 5201400 7692200 4526.6 7993900 7499600 11649000 6588700 6155500 6151500 5989600 6321100 4842900 7178800 441530 8188500 7166600 11518000 6717300 6530800 6283300 5856600 6092500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 760930000 760930000 0 16108 2440 14787 82725;82726;82727;82728 100132;100133;100134;100135 100134 4 RLDLPIER Unmodified 1010.5873 0.58727866 709 P17812;P17812-2 CTPS1 CTP synthase 1 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 1.12 2 2 2 2 4 4 40.095 40.143 3 0.00045037 10610 20211116_3431_TMUAki_TMT10x_P_F4 133.83 89.456 2725100 4084800 12144 4921700 4276800 3474600 2766000 3479800 3620300 3013000 3768800 2537400 3814700 254890 4940200 4063300 3629100 2911100 3523800 3650900 2961900 3631000 6 6 4 6 6 6 6 6 6 6 6 909970 1195300 7634.6 1690600 2456800 2003500 1104700 1118400 1182200 978970 1214400 847310 1117200 102150 1694400 2322000 2001800 1193700 1177600 1200400 961860 1170500 2 2 1 2 2 2 2 2 2 2 2 1815100 2889500 4509.2 3231100 1820000 1471100 1661300 2361400 2438100 2034000 2554400 1690100 2697500 152740 3245800 1741200 1627200 1717400 2346200 2450500 2000000 2460500 4 4 3 4 4 4 4 4 4 4 4 868780000 305430000 563340000 16109 709 14788 82729;82730;82731;82732;82733;82734;82735;82736 100136;100137;100138;100139;100140;100141;100142;100143 100137 8 RLDLVHTAALMLDK Oxidation (M) 1610.8814 0.88141177 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 1 1 By MS/MS 8 0 1 1 54.451 54.567 4 1.1575E-05 15976 20211116_3436_TMUAki_TMT10x_P_F8 101.2 85.066 11737000 20203000 231750 20484000 22793000 29037000 15217000 17420000 17369000 15812000 16927000 10930000 18852000 1319600 21005000 21677000 28792000 15898000 18250000 17560000 15509000 16343000 3 3 1 3 3 3 3 3 3 3 3 11737000 20203000 231750 20484000 22793000 29037000 15217000 17420000 17369000 15812000 16927000 10930000 18852000 1319600 21005000 21677000 28792000 15898000 18250000 17560000 15509000 16343000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 788120000 788120000 0 16110 352 14789 82737 100144;100145;100146 100145 269 3 RLDPDAIPSPIQVIEDDRNNR Unmodified 2432.2408 0.24079899 1214 P53992 SEC24C Protein transport protein Sec24C yes yes 0 0 0 2 By MS/MS 4 0 1 1 62 61.863 4 4.8814E-10 19714 20211116_3442_TMUAki_TMT10x_S_F4 111.49 95.546 2343600 4177500 81205 4124700 2856300 2417500 2380600 2986300 2629400 2996000 3216500 2182700 3897900 277160 4186000 2731700 2580900 2447300 3007900 2684900 2925700 3084600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2343600 4177500 81205 4124700 2856300 2417500 2380600 2986300 2629400 2996000 3216500 2182700 3897900 277160 4186000 2731700 2580900 2447300 3007900 2684900 2925700 3084600 1 1 1 1 1 1 1 1 1 1 1 671960000 0 671960000 16111 1214 14790 82738 100147 100147 1 RLDPNKYPVPENWLHK Unmodified 2005.0534 0.05337956 978 P39748;P39748-2 FEN1 Flap endonuclease 1 yes no 0 0 0 2 By MS/MS By MS/MS 2.17 0.687 1 3 2 4 2 52.743 52.54 4;5 8.8518E-15 16605 20211116_3429_TMUAki_TMT10x_P_F2 145.55 129.41 33284000 56528000 454700 64072000 54985000 50841000 45015000 27055000 23433000 27548000 40226000 30992000 52775000 3202100 64633000 52480000 52075000 45514000 28723000 25379000 26884000 38285000 10 10 7 10 10 10 10 10 10 10 10 23312000 39145000 386720 45015000 44335000 43182000 36652000 19162000 16175000 19433000 28248000 21707000 36549000 2326000 45481000 42324000 43565000 36946000 20703000 17780000 18968000 26876000 7 7 5 7 7 7 7 7 7 7 7 9972400 17383000 67984 19057000 10650000 7658700 8362800 7893100 7258000 8114900 11978000 9285600 16227000 876160 19152000 10156000 8510500 8568100 8020000 7599600 7916300 11409000 3 3 2 3 3 3 3 3 3 3 3 8259500000 6251300000 2008300000 16112 978 14791 82739;82740;82741;82742;82743;82744 100148;100149;100150;100151;100152;100153;100154;100155;100156;100157 100151 10 RLDQELDFILSQQK Unmodified 1731.9155 0.91554867 963 P37198 NUP62 Nuclear pore glycoprotein p62 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 76.194 76.211 3 0.00019003 25417 20211116_3433_TMUAki_TMT10x_P_F5 84.62 63.957 5286600 9166600 57582 8471400 6919400 8927900 7095500 6616600 5661000 6870700 7031400 4922800 8550800 514830 8698100 6642500 9015000 7143700 6851500 5870500 6699800 6740500 2 2 2 2 2 2 2 2 2 2 2 3011100 5403800 46540 4745600 3341500 6140200 3892700 3787200 3165700 3810700 3923900 2804000 5039800 297640 4908600 3220600 6116300 3897200 3970000 3279300 3720700 3761800 1 1 1 1 1 1 1 1 1 1 1 2275400 3762800 11042 3725800 3577900 2787700 3202800 2829400 2495200 3060000 3107500 2118700 3510900 217180 3789500 3421900 2898700 3246400 2881600 2591100 2979000 2978800 1 1 1 1 1 1 1 1 1 1 1 662870000 312940000 349920000 16113 963 14792 82745;82746 100158;100159 100158 2 RLDVFEK Unmodified 905.49707 0.49706667 2575 Q99460;Q99460-2 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 0 1 By MS/MS 6 0 1 1 43.67 43.835 3 0.0026861 11301 20211116_3445_TMUAki_TMT10x_S_F6 118.5 47.805 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16114 2575 14793 82747 100160 100160 1 RLDVTVQSFGWSDR Unmodified 1664.8271 0.82706802 1901 Q52LJ0;Q52LJ0-1 FAM98B Protein FAM98B no no 0 0 0 1 By MS/MS 8 0 2 2 57.694 57.858 3 7.8006E-10 17284 20211116_3436_TMUAki_TMT10x_P_F8 115.38 101.7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16115 1901 14794 82748;82749 100161;100162 100161 2 RLDYITAEIK Unmodified 1220.6765 0.6764876 173 O15212 PFDN6 Prefoldin subunit 6 yes yes 0 0 0 1 By MS/MS By MS/MS 6.2 0.748 1 2 2 2 3 51.503 51.852 3 2.5573E-05 14550 20211116_3445_TMUAki_TMT10x_S_F6 133.49 81.76 28418000 46431000 183460 45757000 37818000 43737000 33776000 37779000 35612000 30331000 38608000 26462000 43322000 2641300 46697000 36170000 44547000 34529000 38489000 36255000 29929000 37151000 4 4 3 4 4 4 4 4 4 4 4 16071000 25205000 82469 24370000 25148000 32619000 22276000 22028000 20895000 17483000 22039000 14965000 23516000 1518900 25043000 24044000 32483000 22703000 22795000 21358000 17262000 21225000 2 2 1 2 2 2 2 2 2 2 2 12347000 21226000 101000 21387000 12671000 11118000 11500000 15751000 14717000 12848000 16569000 11497000 19806000 1122300 21653000 12126000 12064000 11826000 15694000 14897000 12667000 15926000 2 2 2 2 2 2 2 2 2 2 2 1087100000 575530000 511530000 16116 173 14795 82750;82751;82752;82753;82754 100163;100164;100165;100166;100167 100166 5 RLDYITAEIKR Unmodified 1376.7776 0.77759863 173 O15212 PFDN6 Prefoldin subunit 6 yes yes 0 0 0 2 By MS/MS By MS/MS 4 3.29 2 1 2 2 3 45.452 45.417 4 1.9276E-14 11781 20211116_3447_TMUAki_TMT10x_S_F8 186.76 167.52 7154600 11279000 23496 12337000 12649000 11916000 7888900 10541000 10750000 9778300 10476000 6661600 10528000 668650 12505000 12009000 12134000 8339500 10764000 10801000 9581400 10114000 5 5 2 5 5 5 5 5 5 5 5 3230800 5247200 0 5388100 8050300 8277000 4349700 4842900 4858300 4485300 4742200 3008100 4896800 318840 5530000 7624900 8176700 4621300 5086500 4916100 4395300 4578200 2 2 0 2 2 2 2 2 2 2 2 3923700 6031300 23496 6948700 4598600 3638700 3539200 5698400 5891400 5293000 5733700 3653500 5631300 349810 6974500 4383700 3957300 3718200 5677700 5884900 5186100 5535900 3 3 2 3 3 3 3 3 3 3 3 2015600000 830680000 1184900000 16117 173 14796 82755;82756;82757;82758;82759 100168;100169;100170;100171;100172 100172 5 RLEAALVK Unmodified 898.56 0.56000128 3216 Q9UQ35;Q9UQ35-2 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 37.848 38.232 3 0.01628 10640 20211116_3435_TMUAki_TMT10x_P_F7 63.397 31.463 1336600 2141900 150050 2378500 2120000 2385100 1609900 1584500 1488500 1429500 1750200 1245600 1999500 261630 2409900 2029000 2411400 1655900 1646700 1528900 1402500 1680200 3 3 3 3 3 3 3 3 3 3 3 913010 1427000 108810 1630100 1662000 1970300 1144600 1045500 1020900 981960 1173400 850910 1332300 187590 1653700 1587200 1965500 1184200 1107700 1049400 961650 1127200 2 2 2 2 2 2 2 2 2 2 2 423570 714890 41246 748370 458000 414790 465270 538990 467550 447560 576730 394700 667190 74039 756110 441830 445930 471630 539010 479430 440880 552970 1 1 1 1 1 1 1 1 1 1 1 43157000 35971000 7185900 16118 3216 14797 82760;82761;82762 100173;100174;100175 100173 3 RLEAAYLDLQR Unmodified 1346.7306 0.73064844 323 O75347;O75347-2 TBCA Tubulin-specific chaperone A yes no 0 0 0 1 By MS/MS By MS/MS 5.67 1.15 2 2 2 3 4 5 45.997 46.236 3 6.2343E-16 12259 20211116_3445_TMUAki_TMT10x_S_F6 203.39 148.33 11181000 18960000 135170 20432000 20445000 22130000 13339000 18063000 17383000 14140000 16862000 10411000 17697000 1089800 20765000 19427000 22348000 14027000 18453000 17489000 13971000 16283000 9 9 7 9 9 9 9 9 9 9 9 6711700 11325000 82818 12216000 15937000 18093000 9533700 11058000 10840000 8425100 10021000 6249400 10570000 703670 12487000 15122000 17911000 10046000 11519000 10942000 8336900 9691900 5 5 4 5 5 5 5 5 5 5 5 4469300 7635200 52352 8215500 4507400 4036800 3805300 7005400 6542500 5714600 6841800 4161500 7126600 386090 8277700 4305300 4436900 3981400 6934100 6546700 5634300 6590800 4 4 3 4 4 4 4 4 4 4 4 5555600000 3121500000 2434000000 16119 323 14798 82763;82764;82765;82766;82767;82768;82769;82770;82771 100176;100177;100178;100179;100180;100181;100182;100183;100184;100185 100183 10 RLEAELAAHEPAIQGVLDTGK Unmodified 2217.1753 0.17534519 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS By matching 4.5 0.5 1 1 1 1 60.77 60.875 4 7.9005E-05 18802 20211116_3431_TMUAki_TMT10x_P_F4 66.383 51.129 3038900 5180200 25305 5361400 3830100 5348200 3652000 3227900 3374500 2986500 3811400 2829700 4834400 286610 5456600 3669600 5401600 3705100 3381700 3460700 2926700 3663200 1 1 1 1 1 1 1 1 1 1 1 3038900 5180200 25305 5361400 3830100 5348200 3652000 3227900 3374500 2986500 3811400 2829700 4834400 286610 5456600 3669600 5401600 3705100 3381700 3460700 2926700 3663200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 847870000 558620000 289250000 16120 1663 14799 82772;82773 100186 100186 1 RLEAFEHPNVVR Unmodified 1465.779 0.77899561 632 P11802 CDK4 Cyclin-dependent kinase 4 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 34.55 34.614 4 6.2135E-06 8622 20211116_3433_TMUAki_TMT10x_P_F5 104.24 90.281 1369700 2122400 0 2130400 1785900 1516100 1437300 804440 831230 849950 1494800 1275100 1980400 100990 2163600 1702400 1566400 1457400 855180 895700 828230 1421400 2 2 0 2 2 2 2 2 2 2 2 833260 1283500 0 1275300 1267100 1147100 860670 485600 527780 525030 889720 775770 1197600 64897 1299700 1204000 1161600 883960 528290 564330 511150 847080 1 1 0 1 1 1 1 1 1 1 1 536400 838870 0 855120 518840 369090 576610 318840 303450 324920 605080 499380 782810 36089 863950 498410 404850 573400 326890 331370 317080 574360 1 1 0 1 1 1 1 1 1 1 1 154940000 97453000 57491000 16121 632 14800 82774;82775 100187;100188 100187 2 RLEAGAMVLADR Oxidation (M) 1316.6871 0.68706906 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 1 1 By MS/MS By MS/MS 4.83 1.21 2 3 3 3 1 5 7 35.379 35.478 2;3 1.3145E-06 8901 20211116_3433_TMUAki_TMT10x_P_F5 118.24 83.975 4679000 6956800 106830 7907200 7266400 7237500 5321200 4588700 5155300 4455200 6281300 4357200 6495000 498880 7989500 6923300 7354800 5494100 4795200 5291800 4356700 6024500 9 9 7 9 9 9 9 9 9 9 9 3287400 4715500 59658 5453300 5780300 5962500 3760700 3043800 3597000 3052400 4347200 3061100 4402800 338570 5518800 5493700 5977200 3915200 3242200 3693200 2980700 4170300 4 4 3 4 4 4 4 4 4 4 4 1391600 2241300 47175 2453900 1486100 1275000 1560500 1545000 1558200 1402900 1934100 1296100 2092200 160310 2470800 1429600 1377600 1578900 1552900 1598600 1376000 1854100 5 5 4 5 5 5 5 5 5 5 5 1377900000 1019500000 358360000 16122 799 14801 82776;82777;82778;82779;82780;82781;82782;82783;82784;82785;82786;82787 100189;100190;100191;100192;100193;100194;100195;100196 100191 945 8 RLEAGAMVLADR Unmodified 1300.6922 0.69215444 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 1 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 41.147 41.348 3 5.6196E-15 10288 20211116_3445_TMUAki_TMT10x_S_F6 146.59 117.86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16123 799 14801 82788;82789;82790;82791;82792 100197;100198;100199;100200;100201 100200 5 RLEAGDHPVELLAR Unmodified 1574.8529 0.85288884 577 P09486 SPARC SPARC yes yes 0 0 0 1 By MS/MS 5 0 1 1 37.453 37.599 4 4.1288E-05 8593 20211116_3444_TMUAki_TMT10x_S_F5 97.273 71.887 339340 530390 0 614050 309070 329080 295010 443630 475680 393350 489330 315940 495220 25003 616260 295820 355400 305570 443770 476500 386240 471610 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 339340 530390 0 614050 309070 329080 295010 443630 475680 393350 489330 315940 495220 25003 616260 295820 355400 305570 443770 476500 386240 471610 1 1 0 1 1 1 1 1 1 1 1 72318000 0 72318000 16124 577 14802 82793 100202 100202 1 RLEASDGGLDSAELAAELGMEHQAVVGAVK Unmodified 3022.503 0.50296327 3231 Q9Y285;Q9Y285-2 FARSA Phenylalanine--tRNA ligase alpha subunit yes no 0 0 0 1 By MS/MS 4 0 1 1 69 68.822 4 3.0718E-20 22607 20211116_3442_TMUAki_TMT10x_S_F4 125.62 111.01 4077800 6719900 22210 6854800 5637300 4014400 5066000 3382100 3066400 3851500 4811100 3796700 6270900 336060 6941000 5389400 4250600 5106600 3484700 3269000 3742300 4587100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4077800 6719900 22210 6854800 5637300 4014400 5066000 3382100 3066400 3851500 4811100 3796700 6270900 336060 6941000 5389400 4250600 5106600 3484700 3269000 3742300 4587100 2 2 1 2 2 2 2 2 2 2 2 453600000 0 453600000 16125 3231 14803 82794 100203;100204 100203 2 RLEASETESFGNEIYTVK Unmodified 2072.0062 0.006214175 197 O43148;O43148-2 RNMT mRNA cap guanine-N7 methyltransferase yes no 0 0 0 1 By MS/MS 5 0 1 1 54.991 55.165 3 1.6307E-17 15644 20211116_3444_TMUAki_TMT10x_S_F5 153.18 137.24 1698000 3253000 0 3420900 2070200 1794700 1713600 2453500 2340200 2219300 2622800 1580500 3036000 83833 3453700 1972000 1943500 1776200 2454300 2363400 2177100 2521400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1698000 3253000 0 3420900 2070200 1794700 1713600 2453500 2340200 2219300 2622800 1580500 3036000 83833 3453700 1972000 1943500 1776200 2454300 2363400 2177100 2521400 1 1 0 1 1 1 1 1 1 1 1 483940000 0 483940000 16126 197 14804 82795 100205 100205 1 RLECLKEDVQR Unmodified 1444.7456 0.74564657 2574 Q99459 CDC5L Cell division cycle 5-like protein yes yes 0 0 0 2 By MS/MS 5 0 1 1 36.569 36.731 4 0.064672 8239 20211116_3444_TMUAki_TMT10x_S_F5 48.585 20.288 547730 897930 536.84 925590 664050 551060 599550 739450 755070 642700 825940 509990 837960 47540 936700 635130 588720 616330 739420 763870 631680 794560 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 547730 897930 536.84 925590 664050 551060 599550 739450 755070 642700 825940 509990 837960 47540 936700 635130 588720 616330 739420 763870 631680 794560 1 1 1 1 1 1 1 1 1 1 1 20618000 0 20618000 16127 2574 14805 82796 100206 100206 1 RLEDFRVDPPMGEEGNHK Oxidation (M) 2140.996 0.99600061 2013 Q6PKG0;Q6PKG0-3 LARP1 La-related protein 1 yes no 0 0 1 2 By MS/MS 5 0 1 1 36.899 37.061 5 0.0098782 8318 20211116_3444_TMUAki_TMT10x_S_F5 54.637 43.849 284360 422000 0 549910 211250 173860 198000 335080 410110 292400 360900 264750 394250 19933 546350 202050 203930 208100 331270 406190 287330 349670 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 284360 422000 0 549910 211250 173860 198000 335080 410110 292400 360900 264750 394250 19933 546350 202050 203930 208100 331270 406190 287330 349670 1 1 0 1 1 1 1 1 1 1 1 28177000 0 28177000 16128 2013 14806 82797 100207 100207 2552 1 RLEDLSESIVNDFAYMK Oxidation (M) 2044.9776 0.97755658 1117 P49755 TMED10 Transmembrane emp24 domain-containing protein 10 yes yes 0 0 1 1 By MS/MS By matching 4.5 1.12 1 1 1 1 3 1 77.533 77.535 3 0.0080876 25703 20211116_3431_TMUAki_TMT10x_P_F4 52.172 39.324 8128900 14075000 44605 11806000 8066000 16583000 10503000 9278000 8006300 10035000 11975000 7568900 13125000 687730 12275000 7796200 16435000 10449000 9824500 8395100 9769100 11429000 2 2 1 2 2 2 2 2 2 2 2 8128900 14075000 44605 11806000 8066000 16583000 10503000 9278000 8006300 10035000 11975000 7568900 13125000 687730 12275000 7796200 16435000 10449000 9824500 8395100 9769100 11429000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1799700000 1266200000 533420000 16129 1117 14807 82798;82799;82800;82801 100208;100209;100210 100209 1483 3 RLEEEEAAAEKEDR Unmodified 1673.7857 0.78565671 1937 Q5T280 C9orf114 Putative methyltransferase C9orf114 yes yes 0 0 0 2 By MS/MS By matching 1 0 2 1 1 32.193 32.208 4 0.00028361 6856 20211116_3428_TMUAki_TMT10x_P_F1 83.758 58.285 238110 439990 0 370870 520760 557930 342970 276010 281860 275530 338080 221670 410300 19191 386030 494560 550510 355290 294840 291410 269120 324400 1 1 0 1 1 1 1 1 1 1 1 238110 439990 0 370870 520760 557930 342970 276010 281860 275530 338080 221670 410300 19191 386030 494560 550510 355290 294840 291410 269120 324400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42106000 12749000 29357000 16130 1937 14808 82802;82803 100211 100211 1 RLEEELR Unmodified 943.50869 0.50869399 1536 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 30.998 30.758 3 0.0035792 9374 20211116_3441_TMUAki_TMT10x_S_F3 104.06 21.816 1174400 1713500 1137.9 1553900 1260900 1646800 1288300 846610 810110 1063600 1314200 1093500 1598300 99636 1597900 1209800 1653900 1290600 907660 862960 1029800 1252100 2 2 2 2 2 2 2 2 2 2 2 911310 1332700 199.24 1193600 967760 1305200 966490 590920 579470 726290 985200 848520 1243000 76530 1229100 927910 1306700 968440 640910 620850 703760 937820 1 1 1 1 1 1 1 1 1 1 1 263060 380810 938.62 360380 293190 341590 321830 255690 230630 337290 328970 244940 355260 23106 368810 281900 347220 322130 266750 242110 326050 314300 1 1 1 1 1 1 1 1 1 1 1 87945000 60036000 27908000 16131 1536 14809 82804;82805 100212;100213 100213 2 RLEEFPAFPR Unmodified 1260.6615 0.66150624 2933 Q9NRS6;Q9NRS6-2 SNX15 Sorting nexin-15 yes no 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 48.828 49.382 3 1.0764E-08 15634 20211116_3446_TMUAki_TMT10x_S_F7 170.52 142.51 2497600 4069600 21643 4240700 3834000 4504900 2978400 3803000 3674300 3424100 3687300 2325600 3798000 239920 4318100 3655600 4557200 3087400 3890700 3708000 3359800 3556600 3 3 2 3 3 3 3 3 3 3 3 1457500 2280200 17862 2377700 2673400 3553100 2029000 2188200 2140900 1963300 2081600 1357200 2128100 148480 2436400 2547900 3516500 2095300 2287000 2171000 1926700 2009800 2 2 1 2 2 2 2 2 2 2 2 1040100 1789400 3781.7 1863000 1160600 951770 949390 1614800 1533400 1460800 1605700 968450 1670000 91442 1881700 1107700 1040700 992130 1603700 1537000 1433100 1546800 1 1 1 1 1 1 1 1 1 1 1 498580000 180230000 318350000 16132 2933 14810 82806;82807 100214;100215;100216 100216 3 RLEEIPLIK Unmodified 1109.6808 0.6808447 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 1 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 52.358 52.789 3 3.4878E-06 16952 20211116_3446_TMUAki_TMT10x_S_F7 164.66 52.368 8082500 12602000 28758 15061000 13923000 13887000 8534800 9265400 10004000 9279600 10484000 7525800 11769000 778700 15173000 13217000 14115000 8984400 9654100 10130000 9062400 10099000 3 3 3 3 3 3 3 3 3 3 3 5101600 7936000 23141 9683300 11250000 11588000 6368400 5901900 6499800 5993800 6521300 4750300 7411600 530640 9783600 10666000 11560000 6719100 6290300 6607500 5850100 6290200 2 2 2 2 2 2 2 2 2 2 2 2980900 4666400 5617 5377600 2673600 2298300 2166400 3363500 3504000 3285800 3962700 2775500 4356900 248070 5389800 2551100 2555200 2265400 3363700 3522500 3212300 3808400 1 1 1 1 1 1 1 1 1 1 1 2470200000 1599400000 870770000 16133 1684 14811 82808;82809;82810;82811;82812 100217;100218;100219;100220;100221 100221 5 RLEELLR Unmodified 927.55016 0.55016488 1010 P42285 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 0 0 0 1 By MS/MS 6 0 1 1 40.378 40.542 3 0.0024843 10021 20211116_3445_TMUAki_TMT10x_S_F6 113.71 19.592 296640 483800 2595.8 562770 281690 264570 291730 380890 322260 338290 413630 276220 451740 26804 564080 270510 290530 296330 380120 329750 332150 396190 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 296640 483800 2595.8 562770 281690 264570 291730 380890 322260 338290 413630 276220 451740 26804 564080 270510 290530 296330 380120 329750 332150 396190 1 1 1 1 1 1 1 1 1 1 1 25768000 0 25768000 16134 1010 14812 82813 100222 100222 1 RLEEPEEPK Unmodified 1125.5666 0.5666028 360 O75822;O75822-2 EIF3J Eukaryotic translation initiation factor 3 subunit J yes no 0 0 0 1 By MS/MS 3 0 1 1 31.868 31.623 3 1.0488E-05 9670 20211116_3441_TMUAki_TMT10x_S_F3 134.57 99.678 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16135 360 14813 82814 100223 100223 1 RLEEPSLR Unmodified 998.55089 0.55089316 87 O00429;O00429-2;O00429-4;O00429-3;O00429-5;O00429-9;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 1 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 31.802 31.71 3 0.001286 9700 20211116_3441_TMUAki_TMT10x_S_F3 111.61 38.359 983390 1630000 23690 1625200 1583600 1380300 1143000 918650 1035700 937250 1419700 915810 1521000 112010 1654600 1508700 1410900 1179100 957870 1071900 914600 1357600 2 2 2 2 2 2 2 2 2 2 2 645340 1060600 22536 1049100 1135200 1043100 720710 557240 631600 569110 898130 601050 989580 81366 1071000 1079400 1052100 749960 591440 655900 555330 858140 1 1 1 1 1 1 1 1 1 1 1 338040 569470 1153.9 576010 448390 337220 422270 361400 404050 368140 521540 314760 531400 30647 583590 429350 358810 429130 366430 416020 359270 499470 1 1 1 1 1 1 1 1 1 1 1 117510000 65057000 52454000 16136 87 14814 82815;82816;82817 100224;100225 100225 2 RLEEQEEDTFR Unmodified 1450.6688 0.66883604 2014 Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 yes yes 0 0 0 1 By MS/MS By matching 1.33 0.471 2 1 2 1 33.254 33.183 3 4.4615E-06 7262 20211116_3428_TMUAki_TMT10x_P_F1 118.76 79.497 699080 1083500 0 1173600 1726500 1371400 873580 726870 880630 682460 963710 650830 1011400 62375 1193900 1633300 1370400 930920 770230 898530 668350 927090 2 2 0 2 2 2 2 2 2 2 2 699080 1083500 0 1173600 1726500 1371400 873580 726870 880630 682460 963710 650830 1011400 62375 1193900 1633300 1370400 930920 770230 898530 668350 927090 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 83683000 58263000 25420000 16137 2014 14815 82818;82819;82820 100226;100227 100226 2 RLEEQEEDTFRELR Unmodified 1848.8966 0.89660415 2014 Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 yes yes 0 0 0 2 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 40.634 40.604 3;4 1.2619E-19 10230 20211116_3428_TMUAki_TMT10x_P_F1 178.03 156.19 1975600 3211800 10421 3789400 3203700 2779300 1865600 2828700 2886300 2334100 2895900 1839300 2999100 162930 3809900 3037100 2894800 1994000 2858700 2892000 2300000 2793300 3 3 2 3 3 3 3 3 3 3 3 828660 1269800 0 1632000 2246700 1882600 1026800 1011700 1109700 1028100 1202700 771340 1186200 60785 1643100 2121800 1882900 1107900 1073100 1128600 1003500 1157300 1 1 0 1 1 1 1 1 1 1 1 1146900 1941900 10421 2157400 957030 896700 838850 1817000 1776600 1306000 1693200 1068000 1812800 102140 2166800 915310 1011900 886090 1785600 1763400 1296500 1636000 2 2 2 2 2 2 2 2 2 2 2 190620000 121600000 69025000 16138 2014 14816 82821;82822;82823 100228;100229;100230 100228 3 RLEESDVLQEAR Unmodified 1443.7318 0.73177065 225 O43615 TIMM44 Mitochondrial import inner membrane translocase subunit TIM44 yes yes 0 0 0 1 By MS/MS By MS/MS 1.83 0.687 2 3 1 2 4 36.92 36.822 3 1.5867E-16 11891 20211116_3441_TMUAki_TMT10x_S_F3 200.05 146.6 1986800 3334400 52742 4102300 3827800 3069500 2324100 2536100 2974900 2213000 2836000 1850200 3114200 232410 4115400 3635200 3178700 2456200 2595800 2993000 2174600 2740100 5 5 4 5 5 5 5 5 5 5 5 1007200 1673200 36806 1990000 2879600 2267000 1396500 1269200 1516100 1132900 1402800 938080 1562500 144030 2011900 2726000 2270000 1497800 1336700 1533200 1112100 1356800 2 2 2 2 2 2 2 2 2 2 2 979580 1661200 15937 2112300 948190 802470 927640 1266900 1458700 1080100 1433200 912140 1551700 88378 2103500 909150 908730 958460 1259100 1459900 1062500 1383300 3 3 2 3 3 3 3 3 3 3 3 345670000 222140000 123540000 16139 225 14817 82824;82825;82826;82827;82828;82829 100231;100232;100233;100234;100235;100236 100236 6 RLEEWLGR Unmodified 1057.5669 0.56687757 1254 P56192;P56192-2 MARS Methionine--tRNA ligase, cytoplasmic yes no 0 0 0 1 By MS/MS By MS/MS 5.83 0.687 2 3 1 2 4 44.826 45.065 3 0.00027255 13848 20211116_3446_TMUAki_TMT10x_S_F7 166.09 94.397 780160 1221600 0 1502000 625650 538370 631660 776530 687220 722030 1108900 726310 1140900 50732 1498100 599280 613250 642130 775870 711660 707410 1056600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 780160 1221600 0 1502000 625650 538370 631660 776530 687220 722030 1108900 726310 1140900 50732 1498100 599280 613250 642130 775870 711660 707410 1056600 1 1 0 1 1 1 1 1 1 1 1 300930000 58877000 242050000 16140 1254 14818 82830;82831;82832;82833;82834;82835 100237;100238;100239 100239 3 RLEEYGAFYVGGSK Unmodified 1574.7729 0.77290718 2628 Q9BQC3;Q9BQC3-3 DPH2 Diphthamide biosynthesis protein 2 yes no 0 0 0 1 By matching By MS/MS 7 0 2 1 1 51.303 51.886 3 0.012083 16631 20211116_3446_TMUAki_TMT10x_S_F7 57.148 45.002 3027000 5522900 53544 5221600 3320400 3475100 2889800 8026400 6908400 5857300 5842700 2818800 5152300 304970 5322100 3176200 3750200 3078200 7866100 6814400 5809900 5669200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3027000 5522900 53544 5221600 3320400 3475100 2889800 8026400 6908400 5857300 5842700 2818800 5152300 304970 5322100 3176200 3750200 3078200 7866100 6814400 5809900 5669200 1 1 1 1 1 1 1 1 1 1 1 354030000 221740000 132290000 16141 2628 14819 82836;82837 100240 100240 1 RLEFENQK Unmodified 1062.5458 0.54580778 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 1 By MS/MS 5 0 1 1 33.805 33.983 3 0.004912 7101 20211116_3444_TMUAki_TMT10x_S_F5 76.605 40.394 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16142 1723 14820 82838 100241 100241 1 RLEFPSGETIVMHNPK Unmodified 1853.9458 0.94580295 3359 Q9Y6Y8;Q9Y6Y8-2 SEC23IP SEC23-interacting protein yes no 0 0 0 1 By MS/MS 7 0 1 1 48.57 49.194 4 0.066841 14931 20211116_3435_TMUAki_TMT10x_P_F7 33.624 15.924 3224600 5268500 125780 6082900 8261300 8307000 4842100 4880600 5033200 3623500 5144200 3003300 4919200 455100 6181300 7843000 8248400 5096200 5097500 5116000 3590700 4958900 1 1 1 1 1 1 1 1 1 1 1 3224600 5268500 125780 6082900 8261300 8307000 4842100 4880600 5033200 3623500 5144200 3003300 4919200 455100 6181300 7843000 8248400 5096200 5097500 5116000 3590700 4958900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 316030000 316030000 0 16143 3359 14821 82839 100242 100242 1 RLEFPSGETIVMHNPK Oxidation (M) 1869.9407 0.94071757 3359 Q9Y6Y8;Q9Y6Y8-2 SEC23IP SEC23-interacting protein yes no 0 0 1 1 By MS/MS 7 0 1 1 43.175 43.724 4 0.027844 13062 20211116_3446_TMUAki_TMT10x_S_F7 41.912 18.584 621320 868470 0 1070100 410020 372750 484080 724600 672460 613000 739300 578420 811130 36953 1067000 394260 430660 492990 715620 678240 603290 711110 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 621320 868470 0 1070100 410020 372750 484080 724600 672460 613000 739300 578420 811130 36953 1067000 394260 430660 492990 715620 678240 603290 711110 1 1 0 1 1 1 1 1 1 1 1 77828000 0 77828000 16144 3359 14821 82840 100243 100243 3299 1 RLEIEHSVPK Unmodified 1206.6721 0.67207093 3032 Q9NZI8;Q9NZI8-2 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 2 4 4 2 30.102 30.12 3;4 0.0001874 7938 20211116_3433_TMUAki_TMT10x_P_F5 108.47 70.449 13191000 19905000 67375 19001000 17487000 18941000 15424000 12778000 12743000 12367000 16056000 12283000 18570000 1193000 19447000 16718000 19161000 15670000 13290000 13198000 12096000 15386000 6 6 3 6 6 6 6 6 6 6 6 5600800 8230800 64098 8798500 9836300 10674000 6650000 6634100 6361300 6085500 7118400 5215200 7682300 563100 8963900 9353900 10668000 6903000 6932500 6511100 5966000 6843400 4 4 2 4 4 4 4 4 4 4 4 7590500 11674000 3276.9 10203000 7651200 8267400 8773800 6143800 6381400 6281900 8937800 7067500 10887000 629940 10483000 7364500 8493900 8766900 6357900 6687400 6129500 8542800 2 2 1 2 2 2 2 2 2 2 2 1405700000 958760000 446970000 16145 3032 14822 82841;82842;82843;82844;82845;82846 100244;100245;100246;100247;100248;100249 100246 6 RLELELK Unmodified 899.54402 0.54401687 3402 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 41.404 41.494 3 0.0025751 10120 20211116_3444_TMUAki_TMT10x_S_F5 114.5 0 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16146 3402 14823 82847;82848 100250;100251 100251 2 RLETEASTGQQLNSLNLSSPFDLNFPLPGEK Unmodified 3401.7103 0.71031351 2663 Q9BTE3;Q9BTE3-2;Q9BTE3-3 MCMBP Mini-chromosome maintenance complex-binding protein yes no 0 0 0 1 By matching By MS/MS 7 0 2 1 1 78.508 78.557 4 0.053584 27694 20211116_3446_TMUAki_TMT10x_S_F7 33.62 21.698 6643600 13278000 11320 10146000 10004000 8690400 9808700 6514100 5951800 7046900 9042700 6185800 12378000 594480 10550000 9586700 8894000 9840200 6748800 6333400 6860500 8627500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6643600 13278000 11320 10146000 10004000 8690400 9808700 6514100 5951800 7046900 9042700 6185800 12378000 594480 10550000 9586700 8894000 9840200 6748800 6333400 6860500 8627500 2 2 1 2 2 2 2 2 2 2 2 1623100000 742130000 880930000 16147 2663 14824 82849;82850 100252;100253 100253 2 RLETLLR Unmodified 899.55525 0.55525025 446 O95816;O95816-2 BAG2 BAG family molecular chaperone regulator 2 yes no 0 0 0 1 By MS/MS By MS/MS 3 2.92 2 1 1 1 3 37.563 37.567 3 0.0020654 9077 20211116_3428_TMUAki_TMT10x_P_F1 117.4 34.727 502640 803730 120630 997550 848800 913170 744570 828730 838920 692640 762430 468910 750690 158940 1002700 818550 933580 763620 842780 846620 682080 737850 2 2 2 2 2 2 2 2 2 2 2 185380 310670 55588 399290 478920 533250 344730 381840 369460 309740 343600 173020 290220 71287 403080 459200 531570 357450 393710 373860 305480 332260 1 1 1 1 1 1 1 1 1 1 1 317260 493060 65040 598260 369880 379920 399840 446890 469460 382900 418820 295890 460470 87655 599630 359350 402010 406160 449070 472750 376600 405590 1 1 1 1 1 1 1 1 1 1 1 74482000 46788000 27694000 16148 446 14825 82851;82852;82853;82854 100254;100255;100256 100254 3 RLETPEPGQQGLQAAAR Unmodified 1820.9493 0.94930842 2651 Q9BSJ6;Q9BSJ6-2 FAM64A Protein FAM64A yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 34.599 34.651 3 3.371E-47 8342 20211116_3431_TMUAki_TMT10x_P_F4 246.03 224.4 1454200 2353100 0 3252000 5142700 3663900 2073400 2009500 2392500 1542100 2399300 1353800 2199000 151440 3260200 4852600 3669900 2273500 2112600 2420300 1525400 2314300 4 4 0 4 4 4 4 4 4 4 4 1291400 2086200 0 2939500 5001600 3556700 1937000 1863100 2225800 1418700 2187200 1202300 1949800 143040 2947700 4717700 3547200 2133900 1966500 2250400 1403900 2111100 3 3 0 3 3 3 3 3 3 3 3 162720 266880 0 312480 141070 107190 136450 146360 166690 123360 212090 151470 249200 8392 312490 134830 122740 139590 146140 169860 121430 203190 1 1 0 1 1 1 1 1 1 1 1 402810000 338080000 64738000 16149 2651 14826 82855;82856;82857 100257;100258;100259;100260 100257 4 RLFEGNALLR Unmodified 1187.6775 0.67749065 1054 P46781 RPS9 40S ribosomal protein S9 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.756 2 3 2 3 4 46.789 46.65 2;3 4.9887E-11 14212 20211116_3429_TMUAki_TMT10x_P_F2 202.03 148.91 23859000 36918000 376420 41716000 27747000 29774000 25222000 24004000 25186000 24299000 30514000 22216000 34467000 2174800 42040000 26551000 30938000 25715000 24706000 25813000 23719000 29271000 8 8 5 8 8 8 8 8 8 8 8 7204600 11126000 295440 12480000 12775000 16158000 9273200 8397800 8516700 8000300 9585400 6710400 10386000 950670 12691000 12179000 16060000 9565900 8918000 8735300 7829900 9213600 3 3 3 3 3 3 3 3 3 3 3 16655000 25793000 80980 29236000 14972000 13616000 15949000 15606000 16669000 16298000 20929000 15506000 24080000 1224100 29349000 14372000 14879000 16149000 15788000 17078000 15889000 20057000 5 5 2 5 5 5 5 5 5 5 5 2563100000 1742400000 820640000 16150 1054 14827 82858;82859;82860;82861;82862;82863;82864 100261;100262;100263;100264;100265;100266;100267;100268 100262 8 RLFEGNALLRR Unmodified 1343.7786 0.77860168 1054 P46781 RPS9 40S ribosomal protein S9 yes yes 0 0 0 2 By MS/MS By matching 4.67 0.471 1 2 2 1 38.576 38.637 4 5.3403E-08 10150 20211116_3433_TMUAki_TMT10x_P_F5 142.71 90.45 642490 996860 11481 1121700 1520600 1567000 906530 872510 820490 772380 909950 598310 930640 76265 1142200 1443300 1553300 948970 919160 841640 758470 875020 2 2 2 2 2 2 2 2 2 2 2 642490 996860 11481 1121700 1520600 1567000 906530 872510 820490 772380 909950 598310 930640 76265 1142200 1443300 1553300 948970 919160 841640 758470 875020 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 172120000 131790000 40334000 16151 1054 14828 82865;82866;82867 100269;100270 100270 2 RLGAPQQPGPGPPPSR Unmodified 1610.8641 0.86412223 2430 Q96CX2 KCTD12 BTB/POZ domain-containing protein KCTD12 yes yes 0 0 0 1 By MS/MS 3 0 1 1 30.733 30.48 3 3.7854E-23 9243 20211116_3441_TMUAki_TMT10x_S_F3 164.15 138.21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16152 2430 14829 82868 100271 100271 1 RLGAPQQPGPGPPPSRR Unmodified 1766.9652 0.96523325 2430 Q96CX2 KCTD12 BTB/POZ domain-containing protein KCTD12 yes yes 0 0 0 2 By MS/MS 4.5 0.5 2 2 4 26.869 26.86 3;4 8.7246E-16 5844 20211116_3433_TMUAki_TMT10x_P_F5 158.14 136.68 489650 776950 4472.2 912590 1836900 1070900 606230 499510 677380 515910 729130 455770 725480 42086 923780 1729200 1068300 681470 537200 687840 503190 701760 3 3 2 3 3 3 3 3 3 3 3 489650 776950 4472.2 912590 1836900 1070900 606230 499510 677380 515910 729130 455770 725480 42086 923780 1729200 1068300 681470 537200 687840 503190 701760 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78855000 78855000 0 16153 2430 14830 82869;82870;82871;82872 100272;100273;100274 100274 3 RLGGGLGGTR Unmodified 942.53591 0.5359118 560 P08621;P08621-2;P08621-4 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 0 0 0 1 By MS/MS By MS/MS 2.5 1.12 1 1 1 1 3 1 27.988 27.87 3 0.00082027 8293 20211116_3441_TMUAki_TMT10x_S_F3 89.561 16.682 819650 1147200 9909.9 1010200 869830 1305200 1051200 713790 819290 845480 799340 763210 1069900 72093 1044600 838820 1298200 1049600 759520 842930 820310 771710 4 4 2 4 4 4 4 4 4 4 4 657670 841680 9909.9 749320 650300 1093400 800820 522130 614610 629120 581350 612390 785030 59357 776100 627640 1079900 798670 562900 632230 610030 561840 3 3 2 3 3 3 3 3 3 3 3 161990 305500 0 260840 219530 211790 250390 191650 204680 216350 217990 150820 284900 12737 268520 211180 218330 250950 196620 210700 210280 209870 1 1 0 1 1 1 1 1 1 1 1 52552000 34604000 17947000 16154 560 14831 82873;82874;82875;82876 100275;100276;100277;100278 100278 4 RLGGLRPESPESLTSVSR Unmodified 1940.0439 0.043937085 2816 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 yes yes 0 0 0 2 By MS/MS 1 0 1 1 38.753 38.64 4 2.2643E-17 11465 20211116_3439_TMUAki_TMT10x_S_F1 153.36 132.14 242790 447920 0 527890 228180 189910 183330 398730 401160 343980 404530 226060 418260 19162 527830 217620 219000 195050 393230 398700 338210 390130 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 242790 447920 0 527890 228180 189910 183330 398730 401160 343980 404530 226060 418260 19162 527830 217620 219000 195050 393230 398700 338210 390130 1 1 0 1 1 1 1 1 1 1 1 60089000 0 60089000 16155 2816 14832 82877 100279 100279 1 RLGLSTLGELK Unmodified 1185.7081 0.70812208 214 O43399;O43399-2;O43399-4;O43399-3;O43399-5;O43399-7;O43399-6 TPD52L2 Tumor protein D54 yes no 0 0 0 1 By MS/MS 1 0 1 1 53.535 53.535 3 1.5095E-05 15471 20211116_3428_TMUAki_TMT10x_P_F1 106.79 66.354 1228400 1927800 0 1889000 2637500 3993500 1992600 2714400 2573200 2055000 2018400 1143700 1798700 110770 1961300 2512100 3909700 2072900 2804700 2572700 2034200 1964300 1 1 0 1 1 1 1 1 1 1 1 1228400 1927800 0 1889000 2637500 3993500 1992600 2714400 2573200 2055000 2018400 1143700 1798700 110770 1961300 2512100 3909700 2072900 2804700 2572700 2034200 1964300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 226720000 226720000 0 16156 214 14833 82878 100280 100280 1 RLGSLLPVLSPTSLPSPLPATLETPVPAFLK Unmodified 3210.8632 0.86317275 1080 P48681 NES Nestin yes yes 0 0 0 1 By matching By MS/MS 6.67 0.471 1 2 1 2 80.953 80.971 4 2.3639E-15 26511 20211116_3445_TMUAki_TMT10x_S_F6 113.47 106.36 3333300 5359100 0 5449600 3474400 2677700 3995800 1450500 1472600 1781300 3297100 3103300 5000900 235380 5511700 3341800 2871300 3947800 1546600 1673300 1726100 3124100 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3333300 5359100 0 5449600 3474400 2677700 3995800 1450500 1472600 1781300 3297100 3103300 5000900 235380 5511700 3341800 2871300 3947800 1546600 1673300 1726100 3124100 2 2 0 2 2 2 2 2 2 2 2 1956100000 407440000 1548600000 16157 1080 14834 82879;82880;82881 100281;100282 100281 2 RLGSLVDEFK Unmodified 1162.6346 0.63462279 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 1 By MS/MS By MS/MS 6.46 0.929 2 5 4 2 7 6 54.735 55.015 2;3 8.1902E-10 16623 20211116_3433_TMUAki_TMT10x_P_F5 160.72 123.54 130640000 210840000 3794000 270710000 192010000 172790000 133790000 96754000 131470000 119470000 161540000 121660000 196960000 14577000 270470000 182830000 180360000 138680000 102890000 134920000 115740000 154900000 12 12 9 12 12 12 12 12 12 12 12 66521000 107120000 1246300 135270000 138820000 132200000 83439000 47129000 66702000 58696000 79741000 61946000 100060000 7570000 135960000 131780000 132960000 87013000 52557000 69053000 56849000 76519000 6 6 5 6 6 6 6 6 6 6 6 64116000 103730000 2547700 135440000 53189000 40584000 50350000 49625000 64772000 60770000 81802000 59713000 96906000 7007500 134510000 51048000 47399000 51667000 50333000 65867000 58892000 78384000 6 6 4 6 6 6 6 6 6 6 6 22960000000 11243000000 11717000000 16158 647 14835 82882;82883;82884;82885;82886;82887;82888;82889;82890;82891;82892;82893;82894 100283;100284;100285;100286;100287;100288;100289;100290;100291;100292;100293;100294;100295;100296 100283 14 RLHGLPEQFLYGTATK Unmodified 1829.9788 0.97881763 1500 Q02880;Q02880-2 TOP2B DNA topoisomerase 2-beta yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 52.26 52.031 4 0.00072581 15125 20211116_3440_TMUAki_TMT10x_S_F2 63.691 46.811 14453000 24416000 286970 25764000 20230000 21613000 17406000 19359000 17574000 17868000 20624000 13459000 22788000 1524200 26126000 19343000 22223000 17809000 19752000 17980000 17512000 19800000 4 4 3 4 4 4 4 4 4 4 4 7246200 12592000 149480 13453000 12204000 14867000 10034000 9784500 8279800 8888500 10572000 6748000 11753000 809500 13685000 11656000 14944000 10237000 10178000 8581400 8717900 10128000 2 2 2 2 2 2 2 2 2 2 2 7206500 11824000 137490 12311000 8026500 6745500 7372600 9574900 9294500 8979300 10051000 6710800 11035000 714710 12442000 7686600 7278800 7572100 9574400 9398300 8794200 9672600 2 2 1 2 2 2 2 2 2 2 2 999370000 642710000 356650000 16159 1500 14836 82895;82896;82897;82898 100297;100298;100299;100300 100299 4 RLIDLHSPSEIVK Unmodified 1505.8566 0.85657723 1278 P60866;P60866-2 RPS20 40S ribosomal protein S20 yes no 0 0 0 1 By MS/MS By MS/MS 7.33 0.471 4 2 3 3 46.614 46.973 3;4 1.0946E-11 14681 20211116_3446_TMUAki_TMT10x_S_F7 149.69 118.51 31123000 49183000 819190 62136000 57613000 42534000 33835000 26821000 22963000 24817000 38407000 28985000 45941000 3667400 62181000 54691000 44187000 35227000 28003000 24385000 24320000 36572000 8 8 5 8 8 8 8 8 8 8 8 19459000 29786000 622890 37686000 46484000 35635000 26423000 14915000 11689000 13703000 22491000 18123000 27823000 2535300 37857000 44102000 35964000 27394000 16174000 12919000 13433000 21362000 3 3 1 3 3 3 3 3 3 3 3 11664000 19397000 196290 24451000 11129000 6898800 7412600 11906000 11275000 11114000 15915000 10862000 18118000 1132200 24324000 10589000 8223200 7832800 11829000 11466000 10887000 15209000 5 5 4 5 5 5 5 5 5 5 5 5356200000 3212300000 2143900000 16160 1278 14837 82899;82900;82901;82902;82903;82904 100301;100302;100303;100304;100305;100306;100307;100308 100306 8 RLIFSTITSK Unmodified 1164.6867 0.68665836 1032 P43686;P43686-2 PSMC4 26S protease regulatory subunit 6B yes no 0 0 0 1 By MS/MS 6.67 0.471 1 2 3 51.083 51.397 3 2.4429E-09 14401 20211116_3445_TMUAki_TMT10x_S_F6 178.71 138.65 4249700 7186600 39252 8240200 3941100 3133400 3303700 4902500 5195700 4390200 5976200 3957200 6709800 384590 8255600 3765200 3546800 3443000 4879900 5230600 4308800 5740900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4249700 7186600 39252 8240200 3941100 3133400 3303700 4902500 5195700 4390200 5976200 3957200 6709800 384590 8255600 3765200 3546800 3443000 4879900 5230600 4308800 5740900 2 2 2 2 2 2 2 2 2 2 2 481320000 0 481320000 16161 1032 14838 82905;82906;82907 100309;100310;100311 100309 3 RLIPDGCGVK Unmodified 1113.5965 0.59646314 827 P27635 RPL10 60S ribosomal protein L10 yes yes 0 0 0 1 By MS/MS By MS/MS 6.44 2.01 1 1 5 2 7 2 36.175 36.432 3 6.4621E-07 7990 20211116_3447_TMUAki_TMT10x_S_F8 155.97 104.7 5156000 8502600 32189 8717900 9384700 7598800 5692900 4034700 5159000 4645400 6456700 4800900 7934600 505390 8861800 8906900 7730100 5951100 4300400 5317800 4511800 6188400 12 12 7 12 12 12 12 12 12 12 12 3435400 5588500 16773 5665000 7607800 6210900 3860700 2435400 3208900 2983900 4111600 3198800 5214900 353160 5782000 7201100 6208700 4091800 2683100 3325100 2891600 3938400 8 8 6 8 8 8 8 8 8 8 8 1720600 2914100 15416 3052900 1777000 1387900 1832300 1599300 1950000 1661500 2345100 1602100 2719700 152230 3079800 1705800 1521400 1859300 1617300 1992700 1620100 2250000 4 4 1 4 4 4 4 4 4 4 4 633230000 364090000 269140000 16162 827 14839 82908;82909;82910;82911;82912;82913;82914;82915;82916 100312;100313;100314;100315;100316;100317;100318;100319;100320;100321;100322;100323;100324;100325;100326 100326 15 RLISPNLGVVFFNACEAASR Unmodified 2220.1474 0.1473563 1961 Q66K74;Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain yes no 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 72.358 72.39 3 1.4069E-06 22701 20211116_3444_TMUAki_TMT10x_S_F5 89.47 78.03 4210400 7248700 144510 7109000 5187800 6149900 5460400 4255500 4323500 4418500 5147700 3921400 6763300 497440 7247900 4989900 6281700 5489300 4427100 4477500 4308600 4940200 2 2 2 2 2 2 2 2 2 2 2 1986200 3336800 79839 3559800 2391900 3683400 2706100 2045100 2103900 1874100 2593000 1849900 3114400 244760 3617700 2306200 3707900 2709900 2156900 2184000 1837400 2486300 1 1 1 1 1 1 1 1 1 1 1 2224300 3911900 64675 3549200 2795800 2466500 2754300 2210400 2219700 2544400 2554600 2071500 3648900 252690 3630200 2683600 2573800 2779400 2270300 2293400 2471200 2454000 1 1 1 1 1 1 1 1 1 1 1 1140400000 754630000 385810000 16163 1961 14840 82917;82918 100327;100328 100328 2 RLITGLGVGR Unmodified 1040.6455 0.64546224 2629 Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 0 0 0 1 By MS/MS 5 1 1 1 2 37.646 37.806 3 1.167E-05 9956 20211116_3442_TMUAki_TMT10x_S_F4 103.63 67.207 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16164 2629 14841 82919;82920 100329;100330 100329 2 RLLDQIVEK Unmodified 1112.6554 0.65535823 2408;2407 Q96AE4-2;Q96AE4 FUBP1 Far upstream element-binding protein 1 no no 0 0 0 1 By MS/MS By MS/MS 5.86 0.833 3 2 2 4 3 52.825 53.045 3 3.5486E-06 14666 20211116_3434_TMUAki_TMT10x_P_F6 169.58 105.54 21893000 32680000 349370 43225000 28920000 23357000 19084000 20812000 26410000 22569000 29077000 20387000 30534000 2239100 43055000 27503000 24963000 20099000 21341000 26642000 21969000 27967000 6 6 6 6 6 6 6 6 6 6 6 6422600 9126300 80479 11821000 17006000 13139000 7433300 6356900 7620600 6468700 8223200 5980700 8525900 755710 11889000 16070000 13151000 8046200 6808800 7765800 6313100 7913900 2 2 2 2 2 2 2 2 2 2 2 15470000 23554000 268890 31404000 11914000 10218000 11651000 14455000 18790000 16100000 20853000 14406000 22008000 1483400 31166000 11433000 11811000 12052000 14532000 18876000 15656000 20053000 4 4 4 4 4 4 4 4 4 4 4 2168800000 873750000 1295100000 16165 2408;2407 14842 82921;82922;82923;82924;82925;82926;82927 100331;100332;100333;100334;100335;100336;100337;100338 100332 8 RLLEGDGGPNTGGMGAYCPAPQVSNDLLLK Oxidation (M) 3115.5067 0.50666844 766 P22102;P22102-2 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 0 0 1 1 By MS/MS 6.67 0.471 1 2 3 64.739 65.012 3;4 2.7225E-27 22001 20211116_3446_TMUAki_TMT10x_S_F7 153.48 142.38 3679500 5948400 901.86 4869900 4589700 4355700 4037600 4167900 3877800 4074700 4613800 3425700 5546400 280070 5036600 4384500 4464800 4119400 4244400 3978100 3983400 4428000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3679500 5948400 901.86 4869900 4589700 4355700 4037600 4167900 3877800 4074700 4613800 3425700 5546400 280070 5036600 4384500 4464800 4119400 4244400 3978100 3983400 4428000 3 3 1 3 3 3 3 3 3 3 3 2966400000 0 2966400000 16166 766 14843 82928;82929;82930 100339;100340;100341 100341 887 3 RLLELGPKPEVAQQTR Unmodified 1834.0425 0.042480522 1207 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 2 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 43.282 43.163 4 1.7616E-42 11183 20211116_3428_TMUAki_TMT10x_P_F1 223.65 208.14 7832600 12743000 142500 15070000 13327000 13810000 8553400 12581000 12817000 10734000 12234000 7293900 11899000 844770 15190000 12666000 14119000 9057700 12798000 12832000 10559000 11820000 7 7 6 7 7 7 7 7 7 7 7 3935100 6038500 67009 7307300 10239000 10609000 5769600 6716100 6943300 5489800 6177600 3664500 5639300 476990 7414400 9709000 10517000 6122400 6988300 6985100 5412100 5983000 3 3 3 3 3 3 3 3 3 3 3 3897500 6704200 75488 7762300 3088200 3200700 2783800 5864900 5874200 5244100 6056200 3629400 6259700 367780 7775900 2957100 3601900 2935300 5810000 5847200 5147200 5836600 4 4 3 4 4 4 4 4 4 4 4 1160900000 841220000 319690000 16167 1207 14844 82931;82932;82933;82934 100342;100343;100344;100345;100346;100347;100348 100342 7 RLLGSSASSPGYQSSYQVGINQR Unmodified 2454.2251 0.22514893 3061 Q9P2B4 CTTNBP2NL CTTNBP2 N-terminal-like protein yes yes 0 0 0 1 By MS/MS 3 0 1 1 43.52 43.567 3 0.0031223 13411 20211116_3430_TMUAki_TMT10x_P_F3 57.046 48.446 1428000 2279200 2176.6 2991900 4246100 4274700 2343000 2284900 2771300 1902600 2098800 1329600 2129400 147650 3021100 4022900 4230900 2489300 2412100 2776700 1873900 2045500 2 2 1 2 2 2 2 2 2 2 2 1428000 2279200 2176.6 2991900 4246100 4274700 2343000 2284900 2771300 1902600 2098800 1329600 2129400 147650 3021100 4022900 4230900 2489300 2412100 2776700 1873900 2045500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37910000 37910000 0 16168 3061 14845 82935 100349;100350 100350 2 RLLPSLIGR Unmodified 1023.6553 0.65529865 377 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 0 0 0 1 By matching By MS/MS 5.33 0.471 2 1 1 2 47.256 47.416 3 3.5198E-06 12783 20211116_3445_TMUAki_TMT10x_S_F6 180.74 148.87 950350 1574000 573.3 1711000 1114100 751930 749240 1697500 1488500 1302000 1466500 884840 1469200 76959 1721500 1058800 846420 801950 1666300 1481100 1287900 1415400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 950350 1574000 573.3 1711000 1114100 751930 749240 1697500 1488500 1302000 1466500 884840 1469200 76959 1721500 1058800 846420 801950 1666300 1481100 1287900 1415400 2 2 1 2 2 2 2 2 2 2 2 168320000 90583000 77733000 16169 377 14846 82936;82937;82938 100351;100352;100353 100353 3 RLLQIIDRDGEEEEEEEEPLDESSVK Unmodified 3085.4575 0.45751245 2328 Q8WYA6;Q8WYA6-4 CTNNBL1 Beta-catenin-like protein 1 yes no 0 0 0 2 By MS/MS 1 0 1 1 60.843 60.843 4 1.1487E-49 18414 20211116_3428_TMUAki_TMT10x_P_F1 215.79 197.39 6854100 11029000 51236 11441000 6629700 10277000 7671800 3792300 5090600 4796300 7620600 6382200 10293000 612860 11625000 6386200 10396000 7647400 4213100 5381500 4642900 7273000 2 2 2 2 2 2 2 2 2 2 2 6854100 11029000 51236 11441000 6629700 10277000 7671800 3792300 5090600 4796300 7620600 6382200 10293000 612860 11625000 6386200 10396000 7647400 4213100 5381500 4642900 7273000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1485400000 1485400000 0 16170 2328 14847 82939 100354;100355 100354 2 RLLSRPQDALEGVVLSPSLEAR Unmodified 2405.3391 0.33905647 2973 Q9NVI7;Q9NVI7-2;Q9NVI7-3 ATAD3A ATPase family AAA domain-containing protein 3A yes no 0 0 0 2 By matching By MS/MS 1 0 2 1 1 61.509 61.371 4 5.0166E-07 20798 20211116_3439_TMUAki_TMT10x_S_F1 86.357 73.127 17282000 27293000 163480 27553000 16864000 16281000 17001000 22389000 19427000 22507000 20555000 16090000 25468000 1301300 27922000 16166000 17419000 17312000 22459000 19697000 21977000 19793000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17282000 27293000 163480 27553000 16864000 16281000 17001000 22389000 19427000 22507000 20555000 16090000 25468000 1301300 27922000 16166000 17419000 17312000 22459000 19697000 21977000 19793000 3 3 2 3 3 3 3 3 3 3 3 2335500000 1374700000 960840000 16171 2973 14848 82940;82941 100356;100357;100358 100357 3 RLLSTDAEAVSTR Unmodified 1417.7525 0.75250609 1814 Q15545 TAF7 Transcription initiation factor TFIID subunit 7 yes yes 0 0 0 1 By MS/MS 5 0 1 1 34.028 34.206 3 0.0017565 7204 20211116_3444_TMUAki_TMT10x_S_F5 72.47 52.858 513730 799870 10082 1039900 508900 399350 435920 559940 709120 527310 770230 478410 747260 51920 1034300 486740 449950 454440 560230 711620 516340 741130 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 513730 799870 10082 1039900 508900 399350 435920 559940 709120 527310 770230 478410 747260 51920 1034300 486740 449950 454440 560230 711620 516340 741130 1 1 1 1 1 1 1 1 1 1 1 17656000 0 17656000 16172 1814 14849 82942 100359 100359 1 RLLYMAIDGVAPR Oxidation (M) 1489.8075 0.80751855 2772 Q9H0D6;Q9H0D6-2 XRN2 5'-3' exoribonuclease 2 yes no 0 0 1 1 By MS/MS By MS/MS 3 0 2 1 1 53.547 53.284 3 0.0005938 18489 20211116_3441_TMUAki_TMT10x_S_F3 78.401 62.511 10724000 15330000 228310 17814000 19135000 19359000 14005000 11440000 11016000 10555000 13697000 9987200 14314000 1219700 18021000 18232000 19448000 14382000 12005000 11432000 10345000 13130000 3 3 3 3 3 3 3 3 3 3 3 8138000 11403000 216420 13369000 16497000 17199000 11568000 8944900 8696600 8259000 10509000 7578900 10648000 993460 13557000 15707000 17099000 11902000 9490600 9037200 8094500 10081000 2 2 2 2 2 2 2 2 2 2 2 2586500 3927000 11889 4444800 2638100 2160000 2437800 2495300 2318900 2295700 3187900 2408400 3666300 226240 4463700 2525200 2349000 2479500 2514100 2395200 2250300 3048300 1 1 1 1 1 1 1 1 1 1 1 366630000 164860000 201770000 16173 2772 14850 82943;82944 100360;100361;100362 100362 2942 3 RLLYMAIDGVAPR Unmodified 1473.8126 0.81260393 2772 Q9H0D6;Q9H0D6-2 XRN2 5'-3' exoribonuclease 2 yes no 0 0 0 1 By MS/MS 4 0 1 1 61.445 61.562 3 3.3198E-12 19138 20211116_3431_TMUAki_TMT10x_P_F4 157.2 133.11 1790000 2629900 58899 2806900 2340400 3198800 2174000 1720200 1436300 1585000 2054900 1667200 2454700 211010 2856800 2243500 3201300 2191100 1819500 1515500 1553500 1963100 1 1 1 1 1 1 1 1 1 1 1 1790000 2629900 58899 2806900 2340400 3198800 2174000 1720200 1436300 1585000 2054900 1667200 2454700 211010 2856800 2243500 3201300 2191100 1819500 1515500 1553500 1963100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 289390000 289390000 0 16174 2772 14850 82945 100363 100363 1 RLNDFASTVR Unmodified 1177.6204 0.62036971 747 P20674 COX5A Cytochrome c oxidase subunit 5A, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 35.579 35.562 3 1.7774E-05 10139 20211116_3439_TMUAki_TMT10x_S_F1 136.06 98.459 1150000 1705300 12145 1911700 1839700 1507100 1211600 1184100 1082000 913230 1425200 1070900 1592000 116320 1929600 1748900 1553000 1257900 1212100 1118600 903070 1364200 2 2 2 2 2 2 2 2 2 2 2 547780 799020 8256.7 907440 1291400 1013900 665090 628530 577060 462580 673960 510100 745980 63524 919670 1223000 1017700 704650 653530 594350 458620 647150 1 1 1 1 1 1 1 1 1 1 1 602260 906330 3887.9 1004200 548320 493210 546560 555610 504940 450650 751200 560790 846060 52800 1009900 525940 535380 553200 558620 524250 444450 717030 1 1 1 1 1 1 1 1 1 1 1 137070000 69622000 67447000 16175 747 14851 82946;82947 100364;100365 100365 2 RLNQQPSQGLGPR Unmodified 1449.7801 0.78005825 958 P36915 GNL1 Guanine nucleotide-binding protein-like 1 yes yes 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 29.083 29.032 3 1.6658E-15 5654 20211116_3428_TMUAki_TMT10x_P_F1 178.22 156.16 248680 330910 1571.8 377490 431910 357340 272940 232780 239070 222210 298970 231530 308950 21701 381510 410040 362480 284110 242650 246820 217450 286550 3 3 2 3 3 3 3 3 3 3 3 189640 246670 591.63 278360 373710 308280 204980 178500 172860 155530 219290 176560 230290 15905 282180 353940 309290 215750 187350 178910 152850 210100 2 2 1 2 2 2 2 2 2 2 2 59035 84241 980.21 99136 58192 49065 67954 54281 66208 66675 79675 54975 78661 5796.2 99335 56102 53190 68364 55297 67909 64608 76443 1 1 1 1 1 1 1 1 1 1 1 24017000 19583000 4433300 16176 958 14852 82948;82949;82950 100366;100367;100368 100366 3 RLNQVIFPVSYNDK Unmodified 1691.8995 0.89950468 2762 Q9GZZ1;Q9GZZ1-2 NAA50 N-alpha-acetyltransferase 50 yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 56.23 55.98 3 5.5555E-14 16778 20211116_3440_TMUAki_TMT10x_S_F2 131.36 100.49 6839300 10861000 0 10971000 8766500 11555000 7420100 6380900 6249100 6494800 8284500 6366800 10134000 434200 11193000 8361500 11619000 7560700 6752200 6480900 6338500 7928800 1 1 0 1 1 1 1 1 1 1 1 6839300 10861000 0 10971000 8766500 11555000 7420100 6380900 6249100 6494800 8284500 6366800 10134000 434200 11193000 8361500 11619000 7560700 6752200 6480900 6338500 7928800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 733900000 733900000 0 16177 2762 14853 82951;82952 100369;100370 100370 2 RLNSPIGR Unmodified 911.5301 0.53009814 881 P30876 POLR2B DNA-directed RNA polymerase II subunit RPB2 yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 29.241 29.007 3 0.0022311 8715 20211116_3441_TMUAki_TMT10x_S_F3 86.67 31.3 219870 324010 684.8 281630 270050 391950 249250 223830 222470 186900 250420 204730 302170 19570 291960 258460 388710 253090 234950 228490 184060 240700 1 1 1 1 1 1 1 1 1 1 1 219870 324010 684.8 281630 270050 391950 249250 223830 222470 186900 250420 204730 302170 19570 291960 258460 388710 253090 234950 228490 184060 240700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10089000 10089000 0 16178 881 14854 82953;82954 100371;100372 100372 2 RLNVCVSK Unmodified 974.53313 0.5331346 2310 Q8WVV9;Q8WVV9-5;Q8WVV9-4 HNRNPLL Heterogeneous nuclear ribonucleoprotein L-like yes no 0 0 0 1 By matching By MS/MS 3.33 1.25 1 1 1 1 2 34.324 34.23 3 0.0012628 10773 20211116_3441_TMUAki_TMT10x_S_F3 112.11 80.685 1368600 2198500 18656 2323500 1344900 1290100 1260100 1389500 1343800 1290000 1710000 1274400 2051900 130520 2346100 1288500 1380300 1285200 1404700 1376400 1263900 1638200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1368600 2198500 18656 2323500 1344900 1290100 1260100 1389500 1343800 1290000 1710000 1274400 2051900 130520 2346100 1288500 1380300 1285200 1404700 1376400 1263900 1638200 2 2 2 2 2 2 2 2 2 2 2 62431000 13211000 49221000 16179 2310 14855 82955;82956;82957 100373;100374 100373 2 RLNVTPLAR Unmodified 1038.6298 0.62981218 795 P24752 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes yes 0 0 0 1 By MS/MS 3 0 1 1 34.112 33.872 3 0.029714 10585 20211116_3441_TMUAki_TMT10x_S_F3 55.249 42.622 404990 673610 6350.8 739430 395010 316650 403310 483950 474240 422940 567870 377130 628800 39355 743370 379350 352420 410860 481780 482680 415580 544900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 404990 673610 6350.8 739430 395010 316650 403310 483950 474240 422940 567870 377130 628800 39355 743370 379350 352420 410860 481780 482680 415580 544900 1 1 1 1 1 1 1 1 1 1 1 14619000 0 14619000 16180 795 14856 82958 100375 100375 1 RLNVWDLSK Unmodified 1129.6244 0.62439245 1854;1553 Q16576;Q16576-2;Q09028;Q09028-3;Q09028-2;Q09028-4 RBBP7;RBBP4 Histone-binding protein RBBP7;Histone-binding protein RBBP4 no no 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 53.476 53.207 3 4.0958E-05 16894 20211116_3429_TMUAki_TMT10x_P_F2 143.5 87.244 5065600 8629500 38834 9304100 9134100 8394900 6173600 4959300 4748800 4705000 7056100 4716500 8054700 475970 9430500 8683700 8531100 6372800 5208100 4975300 4605700 6735400 2 2 1 2 2 2 2 2 2 2 2 2594600 4415700 0 4776900 7080900 6453000 4171600 2593600 2429700 2356100 3596800 2415500 4121700 240770 4872800 6713900 6383700 4329700 2824700 2589500 2310800 3433600 1 1 0 1 1 1 1 1 1 1 1 2471000 4213800 38834 4527200 2053300 1942000 2002000 2365700 2319100 2349000 3459300 2301000 3933100 235200 4557700 1969800 2147300 2043200 2383400 2385800 2294800 3301700 1 1 1 1 1 1 1 1 1 1 1 355670000 189640000 166020000 16181 1854;1553 14857 82959;82960;82961 100376;100377 100376 2 RLPDAHSDYAR Unmodified 1299.632 0.63199703 2534 Q96PK6 RBM14 RNA-binding protein 14 yes yes 0 0 0 1 By MS/MS By MS/MS 3.83 1.07 1 1 2 2 5 1 28.07 27.976 3;4 5.2861E-06 5924 20211116_3433_TMUAki_TMT10x_P_F5 115.65 100.45 806880 1308000 18958 1164600 1168300 1446500 983730 851720 807780 780470 995340 751430 1219900 89626 1202500 1116700 1442800 1002000 893850 836130 765180 954360 7 7 7 7 7 7 7 7 7 7 7 730280 1184900 18703 1058000 1072700 1363400 884040 774560 722060 698450 902750 680100 1105200 82772 1092800 1025000 1356900 901570 814960 748070 685280 865260 6 6 6 6 6 6 6 6 6 6 6 76601 123060 254.65 106660 95594 83051 99690 77157 85716 82018 92584 71325 114770 6854.1 109610 91778 85930 100470 78891 88056 79903 89100 1 1 1 1 1 1 1 1 1 1 1 56642000 50898000 5744000 16182 2534 14858 82962;82963;82964;82965;82966;82967 100378;100379;100380;100381;100382;100383;100384 100382 7 RLPENLYNDR Unmodified 1288.6524 0.65239812 679 P14927;P14927-2 UQCRB Cytochrome b-c1 complex subunit 7 yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.25 35.305 3 5.6479E-11 8547 20211116_3431_TMUAki_TMT10x_P_F4 199.82 163.49 1561100 2454400 31659 3250900 3946700 3041900 1985700 1935000 2117400 1680300 2356200 1453700 2293200 192340 3257100 3736900 3086900 2120800 2015600 2156800 1651600 2265600 3 3 3 3 3 3 3 3 3 3 3 1236600 1900700 26394 2511900 3609000 2773700 1669000 1542700 1664300 1327000 1827600 1151600 1775900 160350 2523300 3413300 2781900 1794200 1624200 1699200 1304900 1758000 2 2 2 2 2 2 2 2 2 2 2 324480 553730 5264.6 739000 337710 268160 316710 392260 453060 353330 528640 302160 517380 31993 733770 323600 305020 326570 391400 457620 346680 507620 1 1 1 1 1 1 1 1 1 1 1 310930000 255860000 55073000 16183 679 14859 82968;82969;82970 100385;100386;100387 100385 3 RLPEYPQVDDLLLR Unmodified 1725.9414 0.94136949 3127;3128 Q9UI10;Q9UI10-2;Q9UI10-3 EIF2B4 Translation initiation factor eIF-2B subunit delta no no 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 64.559 64.879 3 2.1839E-14 19603 20211116_3434_TMUAki_TMT10x_P_F6 156.72 135.26 5231400 8621200 132170 8614600 6700900 11514000 6679400 6967800 5875900 6086400 6679300 4871700 8044500 552540 8832100 6431000 11449000 6751500 7287400 6041400 5980700 6418400 2 2 1 2 2 2 2 2 2 2 2 5231400 8621200 132170 8614600 6700900 11514000 6679400 6967800 5875900 6086400 6679300 4871700 8044500 552540 8832100 6431000 11449000 6751500 7287400 6041400 5980700 6418400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1150300000 1150300000 0 16184 3127;3128 14860 82971;82972;82973 100388;100389;100390 100389 3 RLPGAIDVIGQTITISR Unmodified 1809.0472 0.047231549 2019 Q6UN15;Q6UN15-3;Q6UN15-4;Q6UN15-5 FIP1L1 Pre-mRNA 3'-end-processing factor FIP1 yes no 0 0 0 1 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 66.393 66.165 3 8.5137E-54 23721 20211116_3441_TMUAki_TMT10x_S_F3 275.5 245.19 16823000 28683000 374270 25924000 20132000 26419000 20628000 21882000 19449000 20684000 22577000 15666000 26754000 1712500 26649000 19334000 26781000 20861000 22442000 19948000 20251000 21683000 9 9 7 9 9 9 9 9 9 9 9 7758800 12434000 127870 11608000 8701600 15967000 9724700 10390000 9231700 9130700 10169000 7225100 11599000 775630 11966000 8377000 15872000 9795400 10807000 9446500 8969400 9780400 4 4 4 4 4 4 4 4 4 4 4 9064600 16249000 246400 14316000 11431000 10451000 10903000 11493000 10217000 11554000 12409000 8441200 15155000 936870 14684000 10957000 10909000 11066000 11634000 10502000 11281000 11902000 5 5 3 5 5 5 5 5 5 5 5 7403900000 4091200000 3312600000 16185 2019 14861 82974;82975;82976;82977;82978;82979 100391;100392;100393;100394;100395;100396;100397;100398;100399 100396 9 RLPNNHIGISFIPR Unmodified 1632.9212 0.92124317 328 O75369;O75369-8;O75369-6;O75369-3;O75369-2;O75369-9;O75369-5;O75369-4;O75369-7 FLNB Filamin-B yes no 0 0 0 1 By MS/MS 5.5 0.5 1 1 2 44.92 45.074 4 6.5863E-05 11517 20211116_3444_TMUAki_TMT10x_S_F5 94.09 73.966 444050 726830 11229 838800 446940 381350 418520 621880 627660 577430 630700 413540 678630 47320 840970 428520 422120 432480 618810 629490 565780 608320 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 444050 726830 11229 838800 446940 381350 418520 621880 627660 577430 630700 413540 678630 47320 840970 428520 422120 432480 618810 629490 565780 608320 1 1 1 1 1 1 1 1 1 1 1 93631000 0 93631000 16186 328 14862 82980;82981 100400 100400 1 RLPPFETFSQGPTLQFTLR Unmodified 2234.1848 0.18478766 1755 Q15022 SUZ12 Polycomb protein SUZ12 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 73.987 73.997 3 0.0035945 23389 20211116_3444_TMUAki_TMT10x_S_F5 59.195 47.924 3877900 6679800 71731 6502500 5264400 4470700 4825900 4614500 4336300 4484600 5208200 3611100 6232300 400190 6615800 5040500 4683000 4902800 4680600 4463800 4385200 4997200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3877900 6679800 71731 6502500 5264400 4470700 4825900 4614500 4336300 4484600 5208200 3611100 6232300 400190 6615800 5040500 4683000 4902800 4680600 4463800 4385200 4997200 2 2 1 2 2 2 2 2 2 2 2 282600000 0 282600000 16187 1755 14863 82982;82983 100401;100402;100403 100402 3 RLPPIVR Unmodified 849.55486 0.55485632 1187 P52788 SMS Spermine synthase yes yes 0 0 0 1 By MS/MS By MS/MS 2.67 1.49 2 1 1 1 1 3 3 33.279 33.236 3 0.0013655 10337 20211116_3441_TMUAki_TMT10x_S_F3 126.2 56.821 2812900 4567800 46727 4532300 3778800 3444000 2877600 2342100 2407000 2231900 3184700 2619300 4262200 279360 4610000 3602800 3550900 2951400 2433600 2496900 2184300 3048000 6 6 3 6 6 6 6 6 6 6 6 1986900 3096100 33687 3156800 2894900 2704400 1925700 1630400 1638800 1515900 2260500 1850200 2889200 201930 3209400 2753000 2758800 1995100 1708500 1701800 1485200 2161400 3 3 1 3 3 3 3 3 3 3 3 825930 1471700 13040 1375500 883960 739630 951940 711670 768230 716000 924160 769090 1372900 77427 1400500 849820 792080 956350 725110 795110 699110 886680 3 3 2 3 3 3 3 3 3 3 3 359900000 246920000 112970000 16188 1187 14864 82984;82985;82986;82987;82988;82989 100404;100405;100406;100407;100408;100409 100408 6 RLPVPESITGFAR Unmodified 1441.8041 0.80414773 2199 Q8N5K1 CISD2 CDGSH iron-sulfur domain-containing protein 2 yes yes 0 0 0 1 By MS/MS By MS/MS 2.2 0.748 1 2 2 2 3 53.479 53.229 3 4.1373E-19 17346 20211116_3430_TMUAki_TMT10x_P_F3 185.66 155.26 12596000 19160000 244550 21969000 18258000 16962000 14250000 12348000 12571000 11948000 16639000 11729000 17889000 1252700 22138000 17414000 17485000 14612000 12776000 13007000 11685000 15925000 5 5 3 5 5 5 5 5 5 5 5 6230300 8858700 0 10560000 11557000 11207000 7818200 4754300 4944300 4909700 7577400 5800300 8272500 492390 10663000 10981000 11232000 8036800 5164100 5249200 4788700 7228100 2 2 0 2 2 2 2 2 2 2 2 6365300 10301000 244550 11408000 6701000 5755200 6432300 7594100 7626700 7037900 9061200 5928600 9616100 760350 11476000 6433200 6253000 6575600 7611700 7757500 6896500 8696600 3 3 3 3 3 3 3 3 3 3 3 1736400000 799040000 937370000 16189 2199 14865 82990;82991;82992;82993;82994 100410;100411;100412;100413;100414 100411 5 RLQCPQVDLFYLHAPDHGTPVEETLHACQR Unmodified 3586.7198 0.71978954 218 O43488 AKR7A2 Aflatoxin B1 aldehyde reductase member 2 yes yes 0 0 0 1 By matching By MS/MS 6.5 0.5 1 1 1 1 54.222 54.529 6 0.0018053 17657 20211116_3446_TMUAki_TMT10x_S_F7 49.968 42.692 4588400 6635800 0 7680400 4120000 3467900 4152600 4535300 4310800 4316800 5407700 4272200 6195900 369030 7698500 3951000 3816700 4215300 4550800 4417500 4225000 5182600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4588400 6635800 0 7680400 4120000 3467900 4152600 4535300 4310800 4316800 5407700 4272200 6195900 369030 7698500 3951000 3816700 4215300 4550800 4417500 4225000 5182600 1 1 0 1 1 1 1 1 1 1 1 1412700000 486710000 926040000 16190 218 14866 82995;82996 100415 100415 1 RLQDSFASETNLDFR Unmodified 1797.8646 0.86457574 2352 Q92621 NUP205 Nuclear pore complex protein Nup205 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 53.205 53.396 3 1.5788E-19 14906 20211116_3444_TMUAki_TMT10x_S_F5 172.26 156.88 8452700 14669000 238420 14735000 11386000 13632000 9383500 13388000 11886000 11311000 12544000 7871800 13688000 931570 15011000 10880000 13950000 9700300 13562000 12006000 11132000 12081000 3 3 2 3 3 3 3 3 3 3 3 3201100 5278300 166060 5134600 5574400 8622800 4769800 5270900 4575700 4497200 4758500 2981800 4924700 453390 5300400 5334900 8493900 4874300 5505100 4670000 4424000 4584600 1 1 1 1 1 1 1 1 1 1 1 5251600 9391200 72359 9600000 5812000 5009300 4613700 8117500 7310500 6813800 7785900 4890000 8763700 478180 9710200 5545000 5456100 4826100 8057400 7336100 6708400 7496100 2 2 1 2 2 2 2 2 2 2 2 578100000 201940000 376160000 16191 2352 14867 82997;82998 100416;100417;100418 100417 3 RLQEETGAK Unmodified 1030.5407 0.5407224 1538 Q07666;Q07666-2;Q5VWX1 KHDRBS1;KHDRBS2 KH domain-containing, RNA-binding, signal transduction-associated protein 1;KH domain-containing, RNA-binding, signal transduction-associated protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 1.12 1 1 1 1 3 1 28.286 28.152 3 7.2306E-05 5584 20211116_3431_TMUAki_TMT10x_P_F4 138.65 35.397 1310100 2111000 13140 1900300 1243500 1421500 1398600 666360 783200 805360 1364200 1219900 1969000 118230 1946400 1196900 1460700 1391500 719780 844320 780830 1298000 4 4 3 4 4 4 4 4 4 4 4 632160 993620 7027.8 898920 630490 873040 613610 373260 402460 422260 649370 588640 926800 57237 923350 604430 879760 616760 406200 427440 410390 618780 2 2 1 2 2 2 2 2 2 2 2 677960 1117400 6111.8 1001400 613020 548470 784980 293100 380740 383090 714850 631290 1042200 60994 1023000 592480 580950 774730 313580 416880 370440 679250 2 2 2 2 2 2 2 2 2 2 2 44933000 27514000 17419000 16192 1538 14868 82999;83000;83001;83002 100419;100420;100421;100422 100419 4 RLQGQLEQGDDTAAERLEK Unmodified 2156.0822 0.082173085 2241 Q8NE71;Q8NE71-2 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 0 2 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 38.46 38.345 4 1.1429E-40 12358 20211116_3441_TMUAki_TMT10x_S_F3 206.21 190.09 4003300 6365700 50808 7864300 11275000 11158000 6250700 8934400 11437000 6623100 7480600 3727900 5945500 481100 7966300 10688000 11114000 6763600 9127000 11268000 6563700 7338800 3 3 3 3 3 3 3 3 3 3 3 3356000 5317800 45781 6409300 10656000 10714000 5810500 7605200 10151000 5619300 6356000 3125100 4966200 423140 6525800 10098000 10579000 6281600 7829900 10003000 5569900 6248900 2 2 2 2 2 2 2 2 2 2 2 647310 1047900 5027.2 1455000 619290 444260 440160 1329200 1285400 1003800 1124700 602750 979300 57959 1440500 589600 534810 482010 1297100 1265000 993780 1089900 1 1 1 1 1 1 1 1 1 1 1 303140000 222530000 80613000 16193 2241 14869 83003;83004 100423;100424;100425 100425 3 RLQQTQAQVDEVVDIMR Oxidation (M) 2044.0371 0.037137148 1392 P63027 VAMP2 Vesicle-associated membrane protein 2 yes yes 0 0 1 1 By MS/MS 4 0 1 1 45.32 45.522 3 0.00011442 12957 20211116_3442_TMUAki_TMT10x_S_F4 76.341 65.874 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16194 1392 14870 83005 100426 100426 1871 1 RLQQTQNQVDEVVDIMR Oxidation (M) 2087.043 0.042950807 1834 Q15836 VAMP3 Vesicle-associated membrane protein 3 yes yes 0 0 1 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 43.366 43.371 3 3.5148E-11 12114 20211116_3442_TMUAki_TMT10x_S_F4 132.51 119.63 2044000 3419900 22557 4663900 4259400 4122700 2644000 3859500 4269800 2824600 3721500 1903200 3195800 202050 4662000 4043600 4227400 2816700 3906400 4253200 2801200 3606900 4 4 2 4 4 4 4 4 4 4 4 1137400 1710800 2321 2452800 3385500 3376500 1913900 2073700 2171700 1498800 1944800 1059000 1599200 115460 2463700 3208500 3353500 2026300 2157000 2190000 1487400 1883100 2 2 1 2 2 2 2 2 2 2 2 906610 1709100 20236 2211100 873910 746150 730090 1785800 2098100 1325800 1776700 844240 1596600 86588 2198300 835110 873850 790430 1749400 2063200 1313800 1723900 2 2 1 2 2 2 2 2 2 2 2 407060000 246290000 160780000 16195 1834 14871 83006;83007;83008;83009 100427;100428;100429;100430 100430 2449 4 RLQSIGTENTEENRR Unmodified 1801.9031 0.90308651 482 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 2 By MS/MS By MS/MS 3.56 0.956 1 4 2 2 7 2 25.754 25.662 3;4 1.0046E-99 7970 20211116_3441_TMUAki_TMT10x_S_F3 360.48 301.06 1242600 1951700 11304 1862200 1924300 1835700 1234900 1040600 1084900 932850 1410300 1156900 1820800 108570 1905700 1827700 1853800 1284100 1094900 1121800 915510 1350400 10 10 5 10 10 10 10 10 10 10 10 1127200 1773600 10543 1657900 1830200 1755400 1116400 964880 991970 853120 1281300 1049500 1654500 99612 1701000 1736900 1764500 1165900 1017600 1024900 837800 1227100 8 8 4 8 8 8 8 8 8 8 8 115410 178130 760.8 204240 94141 80257 118570 75692 92915 79737 128960 107450 166310 8959.9 204660 90861 89305 118200 77310 96927 77708 123290 2 2 1 2 2 2 2 2 2 2 2 547600000 431220000 116370000 16196 482 14872 83010;83011;83012;83013;83014;83015;83016;83017;83018 100431;100432;100433;100434;100435;100436;100437;100438;100439;100440 100440 10 RLQTQVFK Unmodified 1018.5924 0.59236404 1054 P46781 RPS9 40S ribosomal protein S9 yes yes 0 0 0 1 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 35.836 35.745 3 0.00026783 11495 20211116_3441_TMUAki_TMT10x_S_F3 158.76 93.695 4979900 8362700 52878 7722800 9776200 8903000 5713600 5979800 6640200 5473100 6991300 4636900 7800900 502860 7941400 9273200 8931300 6036600 6212200 6727200 5366200 6733400 7 7 4 7 7 7 7 7 7 7 7 3217400 5337100 31677 4842400 7995000 7413500 4057900 3795600 4290800 3530500 4449200 2995700 4978200 337100 5013400 7567200 7312500 4329200 4033800 4360600 3459000 4287000 3 3 1 3 3 3 3 3 3 3 3 1762500 3025600 21201 2880500 1781200 1489400 1655600 2184200 2349400 1942600 2542100 1641200 2822700 165760 2928000 1706000 1618800 1707400 2178400 2366600 1907200 2446300 4 4 3 4 4 4 4 4 4 4 4 427070000 205860000 221210000 16197 1054 14873 83019;83020;83021;83022;83023 100441;100442;100443;100444;100445;100446;100447 100447 7 RLQTSSVLVSGLR Unmodified 1414.8256 0.82561145 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 1 By MS/MS By MS/MS 5.7 1.68 1 2 2 1 2 2 5 5 41.787 42.011 3 1.8086E-36 11233 20211116_3431_TMUAki_TMT10x_P_F4 272.06 228.57 8327300 12106000 58686 14208000 14882000 13137000 9516100 10972000 11533000 9407600 13048000 7753700 11304000 797280 14330000 14135000 13400000 9995600 11218000 11698000 9252400 12540000 12 12 8 12 12 12 12 12 12 12 12 4943700 6679900 40164 7812200 12049000 10441000 6618700 6471200 6711100 5317900 7935700 4603100 6237300 509200 7929100 11416000 10386000 7000400 6745300 6866800 5241300 7617400 5 5 2 5 5 5 5 5 5 5 5 3383600 5426000 18522 6396000 2833000 2695600 2897400 4500600 4821800 4089700 5112000 3150600 5066600 288080 6401100 2719000 3014900 2995200 4472500 4831400 4011100 4922400 7 7 6 7 7 7 7 7 7 7 7 975840000 515950000 459900000 16198 769 14874 83024;83025;83026;83027;83028;83029;83030;83031;83032;83033 100448;100449;100450;100451;100452;100453;100454;100455;100456;100457;100458;100459;100460;100461 100450 14 RLSEDYGVLK Unmodified 1178.6295 0.62953741 899 P32119 PRDX2 Peroxiredoxin-2 yes yes 0 0 0 1 By MS/MS By MS/MS 5.5 1.12 2 2 2 2 4 4 42.29 42.511 3 1.0764E-08 10472 20211116_3444_TMUAki_TMT10x_S_F5 170.52 121.88 13855000 22083000 117110 27349000 30239000 23832000 17273000 19184000 20738000 15896000 21977000 12901000 20625000 1465400 27476000 28675000 24391000 18306000 19641000 20990000 15660000 21162000 7 7 5 7 7 7 7 7 7 7 7 6770300 10628000 98836 14134000 23085000 17834000 9976700 8973900 10371000 7972000 11279000 6304500 9930200 881910 14227000 21811000 17741000 10817000 9541200 10565000 7827200 10853000 3 3 3 3 3 3 3 3 3 3 3 7084900 11455000 18277 13215000 7154200 5998300 7296600 10210000 10368000 7923600 10697000 6596700 10695000 583500 13249000 6863000 6650400 7488900 10100000 10425000 7832800 10309000 4 4 2 4 4 4 4 4 4 4 4 2354400000 1575500000 778910000 16199 899 14875 83034;83035;83036;83037;83038;83039;83040;83041 100462;100463;100464;100465;100466;100467;100468 100466 7 RLSEDYGVLKTDEGIAYR Unmodified 2084.0538 0.05383307 899 P32119 PRDX2 Peroxiredoxin-2 yes yes 0 0 0 2 By MS/MS By MS/MS 5.27 1.05 3 4 2 2 6 5 49.339 49.576 3;4 1.4981E-57 13228 20211116_3434_TMUAki_TMT10x_P_F6 241.13 224.25 44538000 86305000 678820 69868000 92968000 111400000 64289000 116610000 95770000 81704000 81862000 41474000 80471000 4993200 73059000 88462000 111040000 67685000 117260000 95558000 81234000 79400000 11 11 9 11 11 11 11 11 11 11 11 27240000 50769000 581370 41017000 54519000 91134000 49953000 69249000 56744000 49841000 49230000 25367000 47337000 3179700 43282000 52196000 89258000 51118000 70932000 57163000 49477000 47723000 7 7 6 7 7 7 7 7 7 7 7 17298000 35536000 97445 28851000 38449000 20263000 14336000 47364000 39026000 31863000 32632000 16107000 33134000 1813500 29777000 36266000 21782000 16566000 46324000 38395000 31757000 31676000 4 4 3 4 4 4 4 4 4 4 4 12586000000 6518200000 6067900000 16200 899 14876 83042;83043;83044;83045;83046;83047;83048;83049;83050;83051;83052 100469;100470;100471;100472;100473;100474;100475;100476;100477;100478;100479;100480 100475 12 RLSELLR Unmodified 885.5396 0.53960019 553 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 1 By MS/MS By MS/MS 4.11 2.88 2 3 1 1 2 6 3 38.172 38.282 2;3 0.00070816 9388 20211116_3428_TMUAki_TMT10x_P_F1 142.79 38.423 5151400 7579900 46962 7918400 7977900 8512000 5455800 6456900 6796700 6071800 6987500 4796400 7074100 467470 8063000 7586300 8588700 5707500 6657200 6862600 5945900 6734700 8 8 3 8 8 8 8 8 8 8 8 3340700 4872400 46962 5093100 6143200 6698700 3645600 3952500 4222000 3831200 4427100 3110500 4547300 320020 5204300 5827900 6663400 3846300 4153600 4277200 3746700 4264300 5 5 3 5 5 5 5 5 5 5 5 1810700 2707400 0 2825200 1834700 1813300 1810200 2504400 2574700 2240600 2560400 1685900 2526800 147460 2858700 1758400 1925300 1861200 2503500 2585300 2199200 2470400 3 3 0 3 3 3 3 3 3 3 3 2751400000 1709800000 1041600000 16201 553 14877 83053;83054;83055;83056;83057;83058;83059;83060;83061 100481;100482;100483;100484;100485;100486;100487;100488;100489 100481 9 RLSQIGVENTEENRR Unmodified 1799.9238 0.92382195 590 P09972 ALDOC Fructose-bisphosphate aldolase C yes yes 0 0 0 2 By MS/MS 4.5 0.5 1 1 2 29.85 29.835 4 0.020708 6640 20211116_3433_TMUAki_TMT10x_P_F5 53.631 42.997 337030 573470 7828 590160 910020 774790 437160 405020 493920 334970 490020 313860 535170 43262 603640 861160 769600 469920 428360 499850 330030 472820 1 1 1 1 1 1 1 1 1 1 1 337030 573470 7828 590160 910020 774790 437160 405020 493920 334970 490020 313860 535170 43262 603640 861160 769600 469920 428360 499850 330030 472820 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 43272000 43272000 0 16202 590 14878 83062;83063 100490 100490 1 RLSSPCIMVVNHDASSIPR Oxidation (M) 2154.0674 0.067391419 1552 Q08J23;Q08J23-2 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 0 0 1 1 By MS/MS By MS/MS 1 0 2 1 1 38.716 38.659 4 1.1683E-08 9458 20211116_3428_TMUAki_TMT10x_P_F1 114.02 97.335 2069000 3419300 75430 4250100 3105900 2867800 2197400 3194400 3553800 2688600 3126300 1927000 3193700 255820 4256500 2959700 3014200 2318400 3216200 3540800 2646700 3029000 4 4 3 4 4 4 4 4 4 4 4 827310 1242200 7000.2 1519400 2121800 1977300 1186200 1133200 1179600 898850 1136200 770360 1160100 92710 1537300 2011400 1967100 1251900 1187700 1198800 887520 1097400 2 2 1 2 2 2 2 2 2 2 2 1241700 2177100 68430 2730800 984060 890550 1011200 2061200 2374200 1789800 1990100 1156700 2033600 163110 2719200 948390 1047000 1066500 2028500 2342100 1759200 1931700 2 2 2 2 2 2 2 2 2 2 2 283590000 137270000 146320000 16203 1552 14879 83064;83065 100491;100492;100493;100494 100491 2089 4 RLTDADAMK Oxidation (M) 1035.5019 0.50189405 805 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 1 1 By MS/MS 4 0 1 1 29.971 30.01 3 0.053374 6384 20211116_3431_TMUAki_TMT10x_P_F4 40.728 19.857 249070 395960 7570.5 361310 370210 415200 265920 199750 212580 207150 288890 231970 369350 29402 371850 352820 414810 273540 214180 221300 202010 276320 1 1 1 1 1 1 1 1 1 1 1 249070 395960 7570.5 361310 370210 415200 265920 199750 212580 207150 288890 231970 369350 29402 371850 352820 414810 273540 214180 221300 202010 276320 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14283000 14283000 0 16204 805 14880 83066 100495 100495 955 1 RLTELETAVR Unmodified 1186.667 0.66698555 1647 Q13561;Q13561-3;Q13561-2 DCTN2 Dynactin subunit 2 yes no 0 0 0 1 By MS/MS By MS/MS 5 0.707 1 2 1 3 1 37.967 38.026 3 6.5819E-11 8686 20211116_3444_TMUAki_TMT10x_S_F5 199.19 146.06 4674600 7110000 18558 8306300 10306000 8521900 5425900 4659200 5602800 4490700 6112500 4352500 6638900 470750 8392500 9759300 8581400 5764300 4927100 5710200 4392800 5880700 4 4 2 4 4 4 4 4 4 4 4 3818800 5793700 11841 6739900 9523700 7959700 4612500 3899900 4721000 3693100 4981700 3555600 5409700 394570 6827300 9008200 7942300 4938800 4163900 4807300 3615400 4797600 3 3 1 3 3 3 3 3 3 3 3 855820 1316300 6717.7 1566300 782100 562190 813380 759280 881730 797610 1130800 796910 1229200 76182 1565300 751110 639090 825530 763190 902850 777410 1083100 1 1 1 1 1 1 1 1 1 1 1 614830000 424860000 189980000 16205 1647 14881 83067;83068;83069;83070 100496;100497;100498;100499;100500 100500 5 RLTLEDLEDSWDR Unmodified 1646.79 0.79001381 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 1 By MS/MS By MS/MS 2.33 0.943 1 2 1 2 65.97 65.97 3 0.0018404 20553 20211116_3428_TMUAki_TMT10x_P_F1 71.895 55.671 3748200 5645200 76442 5933600 4437400 4569200 5612600 1894700 1916100 1960800 4082400 3490500 5268700 391650 6012500 4289000 4678800 5517200 2063300 2188000 1912300 3871100 1 1 1 1 1 1 1 1 1 1 1 3748200 5645200 76442 5933600 4437400 4569200 5612600 1894700 1916100 1960800 4082400 3490500 5268700 391650 6012500 4289000 4678800 5517200 2063300 2188000 1912300 3871100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 215670000 215670000 0 16206 1997 14882 83071;83072;83073 100501;100502;100503 100501 3 RLTQNADCVVVLDNTALNR Unmodified 2171.1117 0.11169907 778 P23258;Q9NRH3 TUBG1;TUBG2 Tubulin gamma-1 chain;Tubulin gamma-2 chain yes no 0 0 0 1 By MS/MS By MS/MS 6.25 0.829 1 1 2 2 2 49.906 50.181 3 5.488E-32 13892 20211116_3445_TMUAki_TMT10x_S_F6 195.96 177.8 5423900 8974100 150490 10217000 9023800 9880200 6106200 8526500 8517900 7177800 8319500 5051000 8378500 608730 10330000 8586100 10056000 6421000 8697100 8552900 7065800 8031600 5 5 4 5 5 5 5 5 5 5 5 2821800 4085300 70653 5161100 6508600 7665300 3928100 4778700 4814000 3841200 4326800 2627900 3816100 351430 5226700 6180200 7589600 4146800 4976300 4841300 3790200 4189000 2 2 2 2 2 2 2 2 2 2 2 2602100 4888800 79835 5055400 2515100 2214900 2178000 3747800 3703900 3336600 3992700 2423100 4562400 257300 5103100 2405900 2466100 2274100 3720800 3711600 3275700 3842600 3 3 2 3 3 3 3 3 3 3 3 1369500000 330840000 1038700000 16207 778 14883 83074;83075;83076;83077 100504;100505;100506;100507;100508;100509 100507 6 RLTSSVSCALDEAAAALTR Unmodified 1991.0106 0.010588046 314 O75179;O75179-3;O75179-6;O75179-7;O75179-2;Q8IWZ3;Q8IWZ3-6;O75179-5;O75179-4;Q8IWZ3-4;Q8IWZ3-5;Q8IWZ3-2;Q8IWZ3-3 ANKRD17;ANKHD1 Ankyrin repeat domain-containing protein 17;Ankyrin repeat and KH domain-containing protein 1 yes no 0 0 0 1 By matching By MS/MS 1.33 0.471 2 1 1 2 74.432 74.378 3 0.00026269 24254 20211116_3440_TMUAki_TMT10x_S_F2 63.869 46.989 1316600 2457800 20514 2101100 1814500 1586600 1814800 1683000 1439800 1618700 1840100 1226100 2292000 135250 2161000 1741000 1650200 1829200 1704400 1495400 1583500 1762700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1316600 2457800 20514 2101100 1814500 1586600 1814800 1683000 1439800 1618700 1840100 1226100 2292000 135250 2161000 1741000 1650200 1829200 1704400 1495400 1583500 1762700 1 1 1 1 1 1 1 1 1 1 1 528530000 214170000 314360000 16208 314 14884 83078;83079;83080 100510 100510 1 RLTVMSLQESGLK Unmodified 1460.8021 0.80209882 328 O75369;O75369-8;O75369-6;O75369-3;O75369-2;O75369-9;O75369-7 FLNB Filamin-B yes no 0 0 0 1 By MS/MS 4 0 1 1 59.185 59.315 3 0.083571 18191 20211116_3431_TMUAki_TMT10x_P_F4 38.366 10.353 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16209 328 14885 83081 100511 100511 1 RLTVQTK Unmodified 844.51305 0.51305109 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 30.208 30.153 3 0.0048927 7997 20211116_3439_TMUAki_TMT10x_S_F1 100.09 59.062 1697300 2587800 15299 2550300 1735500 2138200 1856300 1327700 1493000 1324300 1927200 1580400 2414600 155080 2598200 1668000 2185500 1865400 1390800 1550200 1293500 1845700 4 4 3 4 4 4 4 4 4 4 4 855600 1250300 7642.5 1250600 936750 1290100 899260 683640 751560 658120 958400 796700 1166700 79194 1276400 897720 1298200 909550 724920 778390 643800 918130 2 2 2 2 2 2 2 2 2 2 2 841660 1337500 7656.1 1299700 798740 848150 957070 644100 741460 666150 968820 783720 1247900 75887 1321800 770290 887310 955840 665830 771810 649690 927540 2 2 1 2 2 2 2 2 2 2 2 31222000 23512000 7709800 16210 1475 14886 83082;83083;83084 100512;100513;100514;100515 100514 4 RLTVSSLQESGLK Unmodified 1416.7936 0.79364262 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 45.827 45.792 3 2.4614E-25 14375 20211116_3439_TMUAki_TMT10x_S_F1 222.56 170.22 13408000 21736000 133670 28728000 32094000 27433000 17581000 17958000 19209000 16345000 22248000 12484000 20308000 1312300 28794000 30404000 27814000 18643000 18688000 19579000 16029000 21367000 6 6 3 6 6 6 6 6 6 6 6 9147800 14894000 35562 19158000 28774000 24321000 14767000 12323000 13150000 11143000 15289000 8516300 13914000 880790 19320000 27228000 24188000 15662000 13100000 13524000 10932000 14683000 4 4 1 4 4 4 4 4 4 4 4 4260700 6841500 98111 9570600 3319800 3112200 2814100 5634700 6059700 5201300 6958500 3967900 6394000 431500 9474300 3176400 3625600 2981300 5588700 6054600 5097800 6684800 2 2 2 2 2 2 2 2 2 2 2 2281300000 1270400000 1010900000 16211 755 14887 83085;83086;83087;83088 100516;100517;100518;100519;100520;100521 100520 6 RLTVTSLQETGLK Unmodified 1444.8249 0.82494275 1703 Q14315;Q14315-2 FLNC Filamin-C yes no 0 0 0 1 By MS/MS 1 0 1 1 48.545 48.293 3 0.090928 15383 20211116_3439_TMUAki_TMT10x_S_F1 36.981 11.764 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16212 1703 14888 83089 100522 100522 1 RLVELLMHNDYK Oxidation (M) 1545.7973 0.79734779 282;1173 O60684;O15131;P52294 KPNA6;KPNA5;KPNA1 Importin subunit alpha-7;Importin subunit alpha-6;Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed no no 0 0 1 1 By MS/MS 8 0 1 1 50.496 50.396 4 0.0018869 13817 20211116_3447_TMUAki_TMT10x_S_F8 71.558 56.185 994690 1623700 36641 1525600 936560 948810 902380 1430700 1195700 1311000 1399900 926420 1514700 115800 1554700 899380 1013000 926190 1426700 1210900 1285300 1344100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 994690 1623700 36641 1525600 936560 948810 902380 1430700 1195700 1311000 1399900 926420 1514700 115800 1554700 899380 1013000 926190 1426700 1210900 1285300 1344100 1 1 1 1 1 1 1 1 1 1 1 184840000 0 184840000 16213 282;1173 14889 83090 100523 100523 219 1 RLVEVDSSR Unmodified 1059.5673 0.5672715 1505 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 29.531 29.419 3 0.00027696 8842 20211116_3441_TMUAki_TMT10x_S_F3 120.65 75.492 904580 1508000 11564 1431800 1230700 1410200 1168100 845330 921360 908950 1271900 842310 1406900 86422 1465800 1178900 1425300 1180500 889890 960560 885100 1216100 2 2 1 2 2 2 2 2 2 2 2 606940 1024700 11564 983400 922480 1082800 782520 539980 588060 593940 868830 565210 956030 65516 1007600 881700 1084800 795040 578020 616720 577850 829430 1 1 1 1 1 1 1 1 1 1 1 297640 483280 0 448440 308200 327370 385630 305350 333310 315010 403090 277100 450830 20906 458130 297210 340480 385490 311860 343850 307250 386680 1 1 0 1 1 1 1 1 1 1 1 52205000 27725000 24480000 16214 1505 14890 83091;83092 100524;100525 100525 2 RLVPGGGATEIELAK Unmodified 1509.8515 0.85149185 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 1 By MS/MS By MS/MS 5.56 1.07 2 2 3 2 5 4 48.817 49.063 2;3 7.9591E-84 13067 20211116_3434_TMUAki_TMT10x_P_F6 340.29 274.41 133180000 212230000 1213500 246660000 228790000 212530000 137560000 113990000 144630000 126380000 168980000 124000000 198160000 12933000 248390000 217120000 216390000 144030000 121240000 147700000 122920000 162260000 10 10 5 9 10 10 9 10 10 10 10 78786000 126800000 456920 137380000 178920000 174570000 94031000 72702000 91904000 78857000 102530000 73357000 118350000 7872400 139660000 169420000 173240000 99254000 79244000 93966000 76762000 98577000 7 7 3 6 7 7 6 7 7 7 7 54389000 85437000 756610 109280000 49869000 37963000 43531000 41286000 52731000 47522000 66455000 50646000 79811000 5060900 108730000 47697000 43147000 44772000 41996000 53729000 46155000 63682000 3 3 2 3 3 3 3 3 3 3 3 24956000000 14698000000 10257000000 16215 1146 14891 83093;83094;83095;83096;83097;83098;83099;83100;83101 100526;100527;100528;100529;100530;100531;100532;100533;100534;100535;100536 100531 11 RLVQSPNSYFMDVK Oxidation (M) 1698.8399 0.83994089 1015 P42677;Q71UM5 RPS27;RPS27L 40S ribosomal protein S27;40S ribosomal protein S27-like yes no 0 0 1 1 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 50.349 50.236 3 1.2032E-09 13708 20211116_3447_TMUAki_TMT10x_S_F8 134.06 108.19 36063000 60430000 434330 70029000 42282000 42313000 35301000 34632000 36481000 36287000 44915000 33577000 56424000 2982500 70349000 40360000 44643000 36209000 35649000 37361000 35371000 43067000 8 8 5 8 8 8 8 8 8 8 8 13776000 21847000 184720 25740000 21672000 26570000 17882000 13113000 14335000 13316000 16805000 12827000 20400000 1218300 25996000 20682000 26714000 18227000 14017000 14826000 12996000 16135000 3 3 2 3 3 3 3 3 3 3 3 22287000 38583000 249610 44290000 20610000 15743000 17419000 21519000 22146000 22971000 28110000 20751000 36023000 1764200 44353000 19678000 17928000 17982000 21631000 22535000 22375000 26932000 5 5 3 5 5 5 5 5 5 5 5 5669900000 3617200000 2052800000 16216 1015 14892 83102;83103;83104;83105;83106;83107 100537;100538;100539;100540;100541;100542;100543;100544 100543 1307 8 RLVQSPNSYFMDVK Unmodified 1682.845 0.84502627 1015 P42677;Q71UM5 RPS27;RPS27L 40S ribosomal protein S27;40S ribosomal protein S27-like yes no 0 0 0 1 By MS/MS 8 0 1 1 54.817 54.748 3 0.0066387 15545 20211116_3447_TMUAki_TMT10x_S_F8 62.377 41.714 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16217 1015 14892 83108 100545 100545 1 RLVTTGVLK Unmodified 985.62842 0.6284152 534 P07305;P07305-2 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes no 0 0 0 1 By MS/MS 3 0 1 1 39.53 39.243 3 8.1823E-06 12726 20211116_3441_TMUAki_TMT10x_S_F3 143.4 114.67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16218 534 14893 83109 100546 100546 1 RLVVFPTDDISLK Unmodified 1501.8504 0.85042922 898 P32004;P32004-2;P32004-3 L1CAM Neural cell adhesion molecule L1 yes no 0 0 0 1 By MS/MS 8 0 1 1 64.518 64.493 3 0.001514 19499 20211116_3447_TMUAki_TMT10x_S_F8 74.133 43.583 3263400 5993900 0 5556800 4125300 3600400 4220400 3630900 4035800 3912000 4359200 3038400 5591300 268350 5670500 3957000 3789200 4270200 3698500 4125300 3809100 4195200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3263400 5993900 0 5556800 4125300 3600400 4220400 3630900 4035800 3912000 4359200 3038400 5591300 268350 5670500 3957000 3789200 4270200 3698500 4125300 3809100 4195200 1 1 0 1 1 1 1 1 1 1 1 490660000 0 490660000 16219 898 14894 83110 100547 100547 1 RLWGDIYFNPK Unmodified 1407.7299 0.72992016 1757 Q15029;Q15029-2;Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 62.401 62.388 3 1.2173E-05 19977 20211116_3442_TMUAki_TMT10x_S_F4 110.08 80.018 13958000 22132000 167980 24013000 17189000 18078000 16985000 11971000 10381000 11907000 16706000 12997000 20659000 1335600 24275000 16486000 18646000 17035000 12477000 11075000 11631000 15920000 4 4 3 4 4 4 4 4 4 4 4 6641100 9779600 132020 11120000 8413000 11755000 9500300 5725600 4796700 5518900 7694000 6184500 9130500 698450 11259000 8102100 11800000 9434100 6119500 5188400 5398500 7332400 2 2 2 2 2 2 2 2 2 2 2 7317000 12353000 35955 12893000 8776400 6323400 7484400 6244900 5584600 6387700 9012000 6812900 11528000 637130 13017000 8383400 6845400 7600500 6357700 5886100 6232700 8587500 2 2 1 2 2 2 2 2 2 2 2 827020000 531140000 295880000 16220 1757 14895 83111;83112;83113 100548;100549;100550;100551;100552 100551 5 RLYWDDLK Unmodified 1107.5713 0.57129425 480 P02786 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes yes 0 0 0 1 By MS/MS 7 0 1 1 50.962 51.634 3 0.0704 16006 20211116_3435_TMUAki_TMT10x_P_F7 43.512 18.721 3075600 5350100 0 6680500 7285300 6877000 4689700 3453800 3029000 3237500 4001900 2863600 4997200 302480 6724200 6919500 6916800 4841300 3677900 3188700 3170800 3830400 1 1 0 1 1 1 1 1 1 1 1 3075600 5350100 0 6680500 7285300 6877000 4689700 3453800 3029000 3237500 4001900 2863600 4997200 302480 6724200 6919500 6916800 4841300 3677900 3188700 3170800 3830400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 338260000 338260000 0 16221 480 14896 83114 100553 100553 1 RLYWDDLKR Unmodified 1263.6724 0.67240528 480 P02786 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes yes 0 0 0 2 By MS/MS By matching 2 0 2 1 1 44 43.863 4 0.0024431 13109 20211116_3429_TMUAki_TMT10x_P_F2 82.029 57.174 1103600 1777800 3700.4 2304400 3432900 2668500 1891000 1054600 1056100 981730 1484200 1027600 1660800 127570 2319200 3253100 2659800 1972900 1151500 1126100 961810 1418500 1 1 1 1 1 1 1 1 1 1 1 1103600 1777800 3700.4 2304400 3432900 2668500 1891000 1054600 1056100 981730 1484200 1027600 1660800 127570 2319200 3253100 2659800 1972900 1151500 1126100 961810 1418500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 199180000 150810000 48368000 16222 480 14897 83115;83116 100554 100554 1 RMAGTAFDFENMK 2 Oxidation (M) 1548.6701 0.67009837 884 P31150 GDI1 Rab GDP dissociation inhibitor alpha yes yes 0 0 2 1 By MS/MS 7 0 1 1 39.651 40.284 3 0.030497 11861 20211116_3446_TMUAki_TMT10x_S_F7 49.62 36.64 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16223 884 14898 83117 100555 100555 1066;1067 1 RMATEVAADALGEEWK Unmodified 1775.8512 0.85123386 1365 P62753 RPS6 40S ribosomal protein S6 yes yes 0 0 0 1 By MS/MS 4 0 1 1 61.116 61.234 3 0.0032513 18980 20211116_3431_TMUAki_TMT10x_P_F4 63.614 45.476 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16224 1365 14899 83118 100556 100556 1 RMATEVAADALGEEWK Oxidation (M) 1791.8461 0.84614848 1365 P62753 RPS6 40S ribosomal protein S6 yes yes 0 0 1 1 By MS/MS 5 0 1 1 54.207 54.407 3 0.0036888 16432 20211116_3433_TMUAki_TMT10x_P_F5 62.525 46.031 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16225 1365 14899 83119 100557 100557 1831 1 RMDERPIHAEPQYPVR Oxidation (M) 2008.9901 0.99012738 727 P19022;P19022-2 CDH2 Cadherin-2 yes no 0 0 1 2 By MS/MS 4 0 1 1 28.563 28.607 4 0.00043981 5865 20211116_3431_TMUAki_TMT10x_P_F4 73.532 57.409 96838 186400 2037 175530 169370 174630 133430 82452 97000 90878 134830 90181 173890 10943 179820 161620 175880 136090 88736 101620 88409 128890 1 1 1 1 1 1 1 1 1 1 1 96838 186400 2037 175530 169370 174630 133430 82452 97000 90878 134830 90181 173890 10943 179820 161620 175880 136090 88736 101620 88409 128890 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20928000 20928000 0 16226 727 14900 83120 100558 100558 835 1 RMEELHNQEMQK Oxidation (M) 1587.7134 0.71336017 777 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 1 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 28.118 27.96 3;4 0.00010655 5578 20211116_3431_TMUAki_TMT10x_P_F4 92.856 79.453 118580 208470 1801.9 218450 200290 160740 152430 102550 98265 93398 148640 110410 194560 10777 221280 190830 166000 155440 106930 104130 91594 141830 2 2 1 2 2 2 2 2 2 2 2 64789 113380 1801.9 116200 136410 121670 83994 44738 49563 46676 78164 60339 105810 8053.9 118430 129590 121880 86873 49427 52943 45506 74517 1 1 1 1 1 1 1 1 1 1 1 53789 95086 0 102240 63882 39071 68432 57810 48702 46722 70479 50068 88752 2722.7 102850 61245 44120 68564 57500 51182 46088 67314 1 1 0 1 1 1 1 1 1 1 1 16486000 9604700 6881700 16227 777 14901 83121;83122;83123 100559;100560 100559 913;914 2 RMEELHNQEMQK 2 Oxidation (M) 1603.7083 0.70827479 777 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 2 1 By MS/MS 3 0 1 1 25.522 25.222 4 0.00034983 7185 20211116_3441_TMUAki_TMT10x_S_F3 81.431 67.468 28685 37263 0 34976 32692 29610 32484 33944 38423 33739 33666 26708 34762 0 35762 31342 30593 33144 34287 38660 32959 32624 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28685 37263 0 34976 32692 29610 32484 33944 38423 33739 33666 26708 34762 0 35762 31342 30593 33144 34287 38660 32959 32624 1 1 0 1 1 1 1 1 1 1 1 8553300 0 8553300 16228 777 14901 83124 100561 100561 913;914 1 RMEELHNQEVQK Oxidation (M) 1555.7413 0.74128948 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 1 1 By MS/MS By MS/MS 3.4 1.02 1 2 1 1 3 2 27.408 27.242 3;4 6.6055E-05 7957 20211116_3441_TMUAki_TMT10x_S_F3 97.463 66.032 323730 563970 6130.1 456850 394040 420480 418500 297750 359920 305220 381240 301470 525850 33129 473090 378790 427840 421410 309150 369480 297790 367110 4 4 3 4 4 4 4 4 4 4 4 83036 123570 0 120540 110340 130830 81392 61576 55169 59447 81495 77311 115290 6858.4 123340 105040 131090 83261 66037 58206 58147 77801 1 1 0 1 1 1 1 1 1 1 1 240700 440400 6130.1 336320 283710 289650 337110 236180 304750 245780 299740 224160 410550 26271 349750 273750 296750 338150 243120 311270 239640 289310 3 3 3 3 3 3 3 3 3 3 3 29101000 7742600 21358000 16229 1779 14902 83125;83126;83127;83128;83129 100562;100563;100564;100565 100564 2395 4 RMEELHNQEVQKR Oxidation (M) 1711.8424 0.84240051 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 1 2 By MS/MS 3 0 1 1 25.858 25.558 4 0.037231 7376 20211116_3441_TMUAki_TMT10x_S_F3 43.382 24.55 8592.3 25881 0 17600 19983 15518 18093 15929 14892 21349 22031 8000.2 24119 0 18509 19113 15947 18352 16337 15543 20627 21031 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8592.3 25881 0 17600 19983 15518 18093 15929 14892 21349 22031 8000.2 24119 0 18509 19113 15947 18352 16337 15543 20627 21031 1 1 0 1 1 1 1 1 1 1 1 1686500 0 1686500 16230 1779 14903 83130 100566 100566 2395 1 RMGESDDSILR Oxidation (M) 1293.5983 0.59831364 1403 P63220 RPS21 40S ribosomal protein S21 yes yes 0 0 1 1 By MS/MS By MS/MS 2.17 1.07 2 2 1 1 4 2 29.299 29.169 2;3 2.3922E-06 7214 20211116_3429_TMUAki_TMT10x_P_F2 119.74 90.787 854530 1438000 6810.7 1374900 1882800 1536000 1041500 887980 899760 723130 1190500 795580 1341600 76109 1409500 1783500 1540200 1096000 930600 931870 713030 1139400 5 5 2 5 5 5 5 5 5 5 5 607800 994170 3293 1001400 1589500 1284600 744660 634260 644110 494550 860810 565820 927690 51937 1025300 1502100 1276600 796400 673510 667360 488760 823680 3 3 1 3 3 3 3 3 3 3 3 246730 443870 3517.7 373480 293240 251360 296850 253720 255660 228580 329660 229750 413920 24172 384160 281460 263660 299640 257090 264510 224280 315720 2 2 1 2 2 2 2 2 2 2 2 216860000 178350000 38512000 16231 1403 14904 83131;83132;83133;83134;83135;83136 100567;100568;100569;100570;100571;100572 100568 1882 6 RMGESDDSILR Unmodified 1277.6034 0.60339901 1403 P63220 RPS21 40S ribosomal protein S21 yes yes 0 0 0 1 By matching By MS/MS 2.5 0.5 1 1 1 1 33.328 33.097 3 7.1311E-12 10260 20211116_3441_TMUAki_TMT10x_S_F3 177.1 134.71 398740 596720 12108 799330 357080 244290 341880 304310 314890 274640 554240 371360 557560 43759 792840 342730 284450 346740 305480 330020 269450 527250 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 398740 596720 12108 799330 357080 244290 341880 304310 314890 274640 554240 371360 557560 43759 792840 342730 284450 346740 305480 330020 269450 527250 1 1 1 1 1 1 1 1 1 1 1 113120000 63934000 49181000 16232 1403 14904 83137;83138 100573 100573 1 RMNLAEK Oxidation (M) 876.44874 0.44873627 3406 yes yes 0 0 1 1 By MS/MS 4.5 0.5 2 2 4 28.227 28.216 3 0.0014267 6025 20211116_3433_TMUAki_TMT10x_P_F5 116.73 57.744 + 2134900 3101900 9691.3 2649300 1708500 2367100 1647900 858390 1106500 1157100 1865900 1987800 2892700 169470 2730400 1636600 2395000 1658000 957840 1176300 1117800 1776500 4 4 2 4 4 4 4 4 4 4 4 2134900 3101900 9691.3 2649300 1708500 2367100 1647900 858390 1106500 1157100 1865900 1987800 2892700 169470 2730400 1636600 2395000 1658000 957840 1176300 1117800 1776500 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39863000 39863000 0 16233 3406 14905 83139;83140;83141;83142 100574;100575 100575 3325 2 RMQALEPYPANESSK Oxidation (M) 1735.8199 0.81993373 197 O43148;O43148-2 RNMT mRNA cap guanine-N7 methyltransferase yes no 0 0 1 1 By MS/MS 6 0 1 1 32.871 32.845 3 0.024451 6644 20211116_3434_TMUAki_TMT10x_P_F6 46.701 34.725 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16234 197 14906 83143 100576 100576 157 1 RMTEPICKK Oxidation (M) 1177.5947 0.59474858 3403 yes yes 0 0 1 2 By MS/MS 5 0 1 1 33.191 33.137 4 0.0069475 7982 20211116_3433_TMUAki_TMT10x_P_F5 63.216 41.752 + 895730 1312000 13179 1315100 1420200 1252200 983580 708010 741000 661770 991960 834110 1224200 93890 1340400 1351500 1267300 1013000 745940 773360 648220 949140 1 1 1 1 1 1 1 1 1 1 1 895730 1312000 13179 1315100 1420200 1252200 983580 708010 741000 661770 991960 834110 1224200 93890 1340400 1351500 1267300 1013000 745940 773360 648220 949140 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 74288000 74288000 0 16235 3403 14907 83144 100577 100577 3321 1 RMTGSEFDFEEMK Unmodified 1605.6803 0.68032871 1133 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 1 By MS/MS By matching 4.67 0.471 1 2 2 1 53.596 53.787 3 1.7266E-08 15911 20211116_3431_TMUAki_TMT10x_P_F4 113.25 93.675 7527100 11992000 341930 18653000 13168000 11178000 9736500 5649500 5646500 5334300 8716200 7011000 11214000 1021700 18447000 12560000 11724000 9928900 6013600 6032300 5222800 8313200 2 2 2 2 2 2 2 2 2 2 2 7527100 11992000 341930 18653000 13168000 11178000 9736500 5649500 5646500 5334300 8716200 7011000 11214000 1021700 18447000 12560000 11724000 9928900 6013600 6032300 5222800 8313200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 636970000 314930000 322040000 16236 1133 14908 83145;83146;83147 100578;100579;100580 100578 3 RMTGSEFDFEEMK 2 Oxidation (M) 1637.6702 0.67015795 1133 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 2 1 By MS/MS 3 0 1 1 40.714 40.412 3 0.0061868 13161 20211116_3441_TMUAki_TMT10x_S_F3 59.75 42.811 2602500 3786600 9512.7 5392700 1356500 1272400 1530000 1666700 3052500 1943400 3269300 2423300 3539300 207180 5326400 1305600 1559300 1590000 1683000 3046400 1886700 3147100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2602500 3786600 9512.7 5392700 1356500 1272400 1530000 1666700 3052500 1943400 3269300 2423300 3539300 207180 5326400 1305600 1559300 1590000 1683000 3046400 1886700 3147100 2 2 2 2 2 2 2 2 2 2 2 171350000 0 171350000 16237 1133 14908 83148 100581;100582 100581 1495;1496 2 RMTGSEFDFEEMK Oxidation (M) 1621.6752 0.67524333 1133 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 1 1 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 45.905 45.935 3 0.00040818 11965 20211116_3444_TMUAki_TMT10x_S_F5 80.312 71.077 8246900 12692000 0 17879000 9207300 8732900 5803900 13822000 17815000 9528000 12621000 7678100 11863000 625870 17737000 8738200 9575000 6437000 13668000 17414000 9482500 12336000 4 4 0 4 4 4 4 4 4 4 4 1531200 2051500 0 2783900 4475800 5034700 2019200 3307000 4387500 2444700 2442400 1425600 1917000 163210 2822000 4229500 4951400 2249900 3423700 4290900 2423200 2416300 1 1 0 1 1 1 1 1 1 1 1 6715800 10641000 0 15095000 4731500 3698200 3784700 10515000 13428000 7083300 10179000 6252500 9945800 462660 14915000 4508700 4623700 4187000 10244000 13123000 7059300 9919700 3 3 0 3 3 3 3 3 3 3 3 975160000 610250000 364920000 16238 1133 14908 83149;83150;83151;83152;83153 100583;100584;100585 100585 1495;1496 3 RNDFQLIGIQDGYLSLLQDSGEVR Unmodified 2735.3879 0.38785716 1404 P63241;P63241-2 EIF5A Eukaryotic translation initiation factor 5A-1 yes no 0 0 0 1 By MS/MS By MS/MS 6 1.29 1 1 2 1 1 2 4 78.635 78.632 3 3.7322E-48 25180 20211116_3434_TMUAki_TMT10x_P_F6 208.63 192.13 20402000 32728000 946940 29542000 21533000 20387000 24584000 13455000 12336000 15247000 20949000 19003000 30526000 2575300 30225000 20780000 21178000 24398000 14084000 13391000 14817000 19942000 5 5 4 5 5 5 5 5 5 5 5 3028600 4666100 0 4172300 2688900 4773900 3538400 1927000 2322600 2598300 2962300 2819800 4352100 231830 4300300 2598600 4762300 3507100 2123000 2438800 2509900 2837800 1 1 0 1 1 1 1 1 1 1 1 17373000 28061000 946940 25369000 18844000 15613000 21045000 11528000 10013000 12649000 17987000 16183000 26174000 2343500 25925000 18182000 16416000 20890000 11961000 10952000 12308000 17105000 4 4 4 4 4 4 4 4 4 4 4 6535700000 1465600000 5070100000 16239 1404 14909 83154;83155;83156;83157;83158;83159 100586;100587;100588;100589;100590;100591 100586 6 RNEFLGELQK Unmodified 1232.6513 0.65133548 2965;1681 Q9NVA2;Q9NVA2-2;Q14141;Q14141-2;Q14141-4 SEPT11;SEPT6 Septin-11;Septin-6 no no 0 0 0 1 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 45.226 45.447 3 1.4372E-07 11646 20211116_3444_TMUAki_TMT10x_S_F5 113.61 20.743 28649000 44027000 106210 54969000 61293000 52444000 34578000 36727000 38421000 33901000 41745000 26675000 41123000 2837800 55267000 58100000 53229000 36590000 38050000 39036000 33226000 40167000 8 8 3 8 8 8 8 8 8 8 8 19602000 29435000 72747 36433000 53491000 45358000 26814000 24222000 25348000 22912000 27889000 18252000 27493000 2096600 36807000 50618000 45182000 28548000 25654000 25941000 22431000 26825000 5 5 2 5 5 5 5 5 5 5 5 9046100 14592000 33461 18535000 7802700 7086500 7764200 12505000 13073000 10989000 13857000 8422900 13630000 741140 18459000 7481100 8047200 8041900 12396000 13095000 10795000 13343000 3 3 1 3 3 3 3 3 3 3 3 1262300000 892400000 369860000 16240 2965;1681 14910 83160;83161;83162;83163;83164 100592;100593;100594;100595;100596;100597;100598;100599 100597 8 RNEFLGELQKK Unmodified 1360.7463 0.7462985 2965;1681 Q9NVA2;Q9NVA2-2;Q14141;Q14141-2;Q14141-4 SEPT11;SEPT6 Septin-11;Septin-6 no no 0 0 0 2 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 42.08 42.32 4 7.7125E-07 10492 20211116_3447_TMUAki_TMT10x_S_F8 135.94 112.09 3826200 6147900 9141.6 7764900 11805000 8603700 5309400 5852600 6731000 5004600 6148600 3562500 5742700 420290 7819800 11156000 8651300 5769200 6063900 6764800 4922700 5949300 4 4 2 4 4 4 4 4 4 4 4 2892000 4531100 9141.6 5616000 11140000 7808200 4451700 4278900 5048800 3598300 4429600 2692600 4232100 348030 5685400 10513000 7740000 4883700 4508200 5088200 3542300 4292300 3 3 2 3 3 3 3 3 3 3 3 934280 1616800 0 2148900 665540 795470 857710 1573700 1682300 1406300 1718900 869890 1510700 72259 2134400 642890 911340 885490 1555700 1676600 1380300 1657100 1 1 0 1 1 1 1 1 1 1 1 315230000 216560000 98674000 16241 2965;1681 14911 83165;83166;83167 100600;100601;100602;100603 100603 4 RNEGVVGGEDYEEVDR Unmodified 1821.8129 0.8129341 2106 Q86UK7;Q86UK7-2;Q86UK7-3 ZNF598 Zinc finger protein 598 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 33.055 33.06 3 4.147E-05 9177 20211116_3439_TMUAki_TMT10x_S_F1 88.471 74.792 436800 803700 1989.3 1197100 1380800 963980 776150 380160 518420 420150 855890 406720 751410 51289 1190000 1308900 983300 810920 417180 550660 408700 815200 2 2 2 2 2 2 2 2 2 2 2 248120 469430 1237.5 692180 1248400 840070 660050 176390 268130 222060 522130 231030 438860 35733 692620 1182300 831770 688150 214200 298940 214990 495810 1 1 1 1 1 1 1 1 1 1 1 188680 334270 751.85 504940 132450 123910 116100 203770 250290 198100 333760 175690 312550 15556 497370 126630 151530 122770 202980 251710 193700 319390 1 1 1 1 1 1 1 1 1 1 1 35009000 20282000 14726000 16242 2106 14912 83168;83169 100604;100605 100605 2 RNELVIR Unmodified 898.53485 0.53484916 626 P11413;P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 29.74 29.672 3 0.0040895 6580 20211116_3433_TMUAki_TMT10x_P_F5 101.6 24.827 533660 811320 12571 844290 720340 1030700 602590 482460 566970 615950 643660 496990 757180 58575 861770 688500 1026100 616280 522190 581070 596070 618540 1 1 1 1 1 1 1 1 1 1 1 533660 811320 12571 844290 720340 1030700 602590 482460 566970 615950 643660 496990 757180 58575 861770 688500 1026100 616280 522190 581070 596070 618540 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26503000 26503000 0 16243 626 14913 83170;83171 100606;100607 100607 2 RNEQLTLHDERFEK Unmodified 1813.9071 0.90710925 2471 Q96GA3 LTV1 Protein LTV1 homolog yes yes 0 0 0 2 By MS/MS 4 0 1 1 33.134 33.16 5 0.0062692 7659 20211116_3431_TMUAki_TMT10x_P_F4 61.265 49.651 380290 575210 1782.5 620870 954700 819850 454820 453680 488880 387240 514460 354100 536910 41235 633140 902960 814700 488540 477760 496770 380940 495490 1 1 1 1 1 1 1 1 1 1 1 380290 575210 1782.5 620870 954700 819850 454820 453680 488880 387240 514460 354100 536910 41235 633140 902960 814700 488540 477760 496770 380940 495490 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 58501000 58501000 0 16244 2471 14914 83172 100608 100608 1 RNFILDQCNVYNSGQR Unmodified 1982.9381 0.93809181 1874 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 0 1 By MS/MS By MS/MS 4.14 3.09 2 2 1 2 3 4 43.806 43.841 3 1.8364E-35 11478 20211116_3428_TMUAki_TMT10x_P_F1 205.52 194.58 8252800 13269000 86557 16735000 12862000 14045000 8693400 10643000 10406000 10036000 10986000 7684400 12394000 777820 16787000 12230000 14398000 9089100 10975000 10532000 9827100 10580000 8 8 6 8 8 8 8 8 8 8 8 5117100 7733700 57964 10031000 10049000 11713000 6726000 6397500 6166900 6067800 6653300 4764500 7224900 496320 10096000 9552000 11709000 6978900 6762900 6315500 5939700 6403100 4 4 3 4 4 4 4 4 4 4 4 3135700 5535300 28594 6703600 2813000 2332600 1967400 4245600 4239000 3968700 4332500 2919900 5169400 281500 6690900 2677700 2688900 2110100 4211800 4216400 3887400 4176500 4 4 3 4 4 4 4 4 4 4 4 2610000000 1709500000 900480000 16245 1874 14915 83173;83174;83175;83176;83177;83178;83179 100609;100610;100611;100612;100613;100614;100615;100616 100610 8 RNFILDQTNVSAAAQR Unmodified 1802.9387 0.93874373 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 1 By MS/MS By MS/MS 3.3 2.9 4 3 1 2 5 5 43.381 43.38 2;3 2.2814E-206 11264 20211116_3428_TMUAki_TMT10x_P_F1 470.63 410.61 11922000 19988000 306230 24997000 20328000 20436000 13181000 19392000 19996000 16968000 18553000 11103000 18670000 1371200 25079000 19329000 21077000 13955000 19696000 19993000 16672000 17942000 13 13 9 13 13 13 13 13 13 13 13 6542900 10733000 120380 13588000 16505000 17035000 9837000 10499000 10442000 9338000 10420000 6092900 10026000 784790 13712000 15665000 16994000 10345000 10970000 10595000 9167800 10052000 6 6 4 6 6 6 6 6 6 6 6 5379300 9254700 185850 11409000 3822300 3401900 3344000 8892300 9554200 7630000 8133200 5009900 8643700 586380 11367000 3663500 4082800 3609200 8726200 9397500 7503800 7889800 7 7 5 7 7 7 7 7 7 7 7 11069000000 7486900000 3582400000 16246 1474 14916 83180;83181;83182;83183;83184;83185;83186;83187;83188;83189 100617;100618;100619;100620;100621;100622;100623;100624;100625;100626;100627;100628;100629 100618 13 RNFILDQTNVSAAAQRR Unmodified 1959.0399 0.03985476 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 2 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 38.047 37.933 4 1.8732E-36 12194 20211116_3441_TMUAki_TMT10x_S_F3 216.71 187.39 2096700 3378800 0 3568600 3331900 3281800 2143400 2670900 2755100 2477200 2887300 1951900 3153500 153970 3622900 3162500 3347200 2255200 2740600 2780700 2427300 2781100 3 3 0 3 3 3 3 3 3 3 3 1355200 2148800 0 2239400 2572900 2637700 1505000 1612900 1656000 1481400 1753000 1261600 2005400 102070 2284100 2438400 2639600 1587100 1687700 1681500 1452200 1688100 1 1 0 1 1 1 1 1 1 1 1 741500 1230000 0 1329300 758950 644040 638340 1058000 1099100 995800 1134200 690330 1148100 51895 1338800 724040 707680 668060 1052900 1099200 975120 1093000 2 2 0 2 2 2 2 2 2 2 2 331670000 290540000 41128000 16247 1474 14917 83190;83191 100630;100631;100632 100631 3 RNIPPYFVALVPQEEELDDQK Unmodified 2499.2646 0.26455413 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 1 By MS/MS By MS/MS 5.75 0.829 2 1 1 2 2 72.051 72.131 3 1.8483E-27 22603 20211116_3444_TMUAki_TMT10x_S_F5 179.1 166.67 25392000 41965000 245270 44559000 27474000 30406000 29619000 22456000 22503000 24199000 29987000 23642000 39167000 2072400 45063000 26394000 31670000 29711000 23285000 23470000 23562000 28695000 9 9 3 9 9 9 9 9 9 9 9 7444000 12254000 245270 12477000 6761700 13176000 8040800 6710600 6877600 7233000 8860900 6932900 11435000 836180 12723000 6530500 13235000 8053200 7164800 7118100 7042600 8486400 3 3 3 3 3 3 3 3 3 3 3 17948000 29711000 0 32082000 20713000 17230000 21578000 15745000 15626000 16966000 21126000 16709000 27732000 1236200 32339000 19863000 18435000 21658000 16120000 16352000 16519000 20209000 6 6 0 6 6 6 6 6 6 6 6 3866800000 1548400000 2318400000 16248 647 14918 83192;83193;83194;83195 100633;100634;100635;100636;100637;100638;100639;100640;100641 100636 9 RNLGSINTELQDVQR Unmodified 1741.9071 0.90710925 331 O75396 SEC22B Vesicle-trafficking protein SEC22b yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 41.252 41.336 3 2.2988E-14 10027 20211116_3444_TMUAki_TMT10x_S_F5 128.71 98.703 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16249 331 14919 83196;83197;83198 100642;100643;100644 100644 3 RNLPVNFEVAR Unmodified 1313.7204 0.7204181 445 O95793;O95793-2 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 41.205 41.205 3 5.2373E-08 12475 20211116_3439_TMUAki_TMT10x_S_F1 121.21 102.9 1246500 1701400 12214 2069300 2928500 2355200 1422600 1017100 1187100 866470 1407500 1160700 1589000 138280 2089300 2770800 2351600 1514500 1097200 1225800 852440 1350900 1 1 1 1 1 1 1 1 1 1 1 1246500 1701400 12214 2069300 2928500 2355200 1422600 1017100 1187100 866470 1407500 1160700 1589000 138280 2089300 2770800 2351600 1514500 1097200 1225800 852440 1350900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 90569000 90569000 0 16250 445 14920 83199;83200;83201;83202 100645;100646;100647;100648 100647 4 RNPDTQWITKPVHK Unmodified 1718.9216 0.92163711 1308 P61313 RPL15 60S ribosomal protein L15 yes yes 0 0 0 2 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 37.138 36.973 5 4.9167E-09 10235 20211116_3429_TMUAki_TMT10x_P_F2 124.16 105.8 2923700 4172600 69540 6133500 9258800 5121700 4143800 2381500 2582800 2456500 4038400 2722800 3900800 395930 6103500 8753400 5218500 4422400 2561900 2747500 2396000 3850600 3 3 3 3 3 3 3 3 3 3 3 2209000 3176700 61605 4486700 8547700 4701600 3555600 1890200 2016500 1822800 3091600 2057300 2969100 329340 4487800 8074200 4713300 3820000 2061700 2157000 1783000 2949000 2 2 2 2 2 2 2 2 2 2 2 714700 995880 7935.2 1646800 711130 420110 588230 491360 566290 633720 946850 665510 931700 66599 1615700 679250 505250 602420 500250 590560 613060 901610 1 1 1 1 1 1 1 1 1 1 1 1748700000 1515000000 233770000 16251 1308 14921 83203;83204;83205 100649;100650;100651 100650 3 RNPGVVIYVNSRPCCVPR Unmodified 2142.0939 0.093880941 2210 Q8N983;Q8N983-4;Q8N983-3;Q8N983-2;Q8N983-6;Q8N983-7 MRPL43 39S ribosomal protein L43, mitochondrial yes no 0 0 0 2 By MS/MS 5 0 1 1 36.152 36.327 4 1.572E-08 8079 20211116_3444_TMUAki_TMT10x_S_F5 118.48 99.884 644760 1095500 0 1166000 686970 506690 651270 642020 670380 636700 850080 600330 1022400 53935 1174600 657800 559880 663070 645770 687530 622060 814480 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 644760 1095500 0 1166000 686970 506690 651270 642020 670380 636700 850080 600330 1022400 53935 1174600 657800 559880 663070 645770 687530 622060 814480 1 1 0 1 1 1 1 1 1 1 1 36260000 0 36260000 16252 2210 14922 83206 100652 100652 1 RNQDLAPNSAEQASILSLVTK Unmodified 2254.1917 0.19172353 1575 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 0 1 By MS/MS By MS/MS 7.18 0.716 2 5 4 6 5 66.071 66.28 2;3;4 4.2126E-100 22012 20211116_3435_TMUAki_TMT10x_P_F7 300 279.21 72522000 117870000 994270 124270000 84971000 91700000 81804000 56741000 64451000 66733000 85424000 67530000 110010000 6702800 125830000 81428000 94641000 82606000 59754000 67072000 64763000 81757000 18 18 13 18 18 18 18 18 18 18 18 31822000 49437000 741480 52655000 35799000 57690000 38675000 26158000 29309000 30312000 37518000 29634000 46142000 3339000 53565000 34440000 57752000 38790000 28311000 30518000 29433000 35938000 9 9 8 9 9 9 9 9 9 9 9 40701000 68438000 252780 71610000 49172000 34009000 43128000 30584000 35143000 36421000 47906000 37895000 63872000 3363900 72268000 46988000 36889000 43816000 31443000 36554000 35330000 45818000 9 9 5 9 9 9 9 9 9 9 9 36038000000 19858000000 16180000000 16253 1575 14923 83207;83208;83209;83210;83211;83212;83213;83214;83215;83216;83217 100653;100654;100655;100656;100657;100658;100659;100660;100661;100662;100663;100664;100665;100666;100667;100668;100669;100670;100671 100659 19 RNQEVVLR Unmodified 1012.5778 0.57777661 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4 KIF21A Kinesin-like protein KIF21A yes no 0 0 0 1 By MS/MS 5 0 1 1 27 26.926 3 0.0011926 5496 20211116_3433_TMUAki_TMT10x_P_F5 113.62 61.14 138430 200650 3549.1 200180 147740 195790 139170 123730 136480 113950 146370 128920 187220 14915 204180 141660 198110 141530 129150 139320 111690 140900 1 1 1 1 1 1 1 1 1 1 1 138430 200650 3549.1 200180 147740 195790 139170 123730 136480 113950 146370 128920 187220 14915 204180 141660 198110 141530 129150 139320 111690 140900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6467200 6467200 0 16254 2082 14924 83218 100672 100672 1 RNQSFCPTVNLDK Unmodified 1577.762 0.76202492 1050 P46776 RPL27A 60S ribosomal protein L27a yes yes 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 41 41.267 3 7.7948E-20 10514 20211116_3436_TMUAki_TMT10x_P_F8 196.74 154.7 15045000 20465000 48272 40796000 31212000 18026000 13518000 10336000 17753000 11939000 19707000 14007000 19172000 1140500 39842000 29479000 19595000 14769000 10945000 17944000 11594000 18950000 6 6 2 6 6 6 6 6 6 6 6 9591100 12638000 24817 25104000 29550000 16263000 10797000 6496900 11186000 7684300 11818000 8929600 11840000 996620 24598000 27857000 16894000 11944000 7134000 11385000 7455900 11381000 4 4 1 4 4 4 4 4 4 4 4 5453400 7826700 23455 15692000 1662300 1762800 2721500 3838600 6566700 4254500 7888200 5077900 7332500 143920 15245000 1621900 2701700 2824200 3810500 6559100 4138000 7568600 2 2 1 2 2 2 2 2 2 2 2 3645000000 2650900000 994120000 16255 1050 14925 83219;83220;83221 100673;100674;100675;100676;100677;100678 100675 6 RNQVSYVRPAEPAFLAR Unmodified 1973.0595 0.05952757 2411 Q96AT1 KIAA1143 Uncharacterized protein KIAA1143 yes yes 0 0 0 2 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 39.409 39.293 4 1.0895E-52 12733 20211116_3441_TMUAki_TMT10x_S_F3 263.2 233.51 2797500 4197800 28521 5119100 4153200 3401100 3051300 2733900 3242300 2468600 3454200 2604500 3920400 216090 5131600 3952300 3555800 3158600 2805400 3297700 2421900 3325500 4 4 2 4 4 4 4 4 4 4 4 1859600 2709900 28462 3415600 3412400 2914800 2357800 1858200 2355900 1699800 2283900 1731300 2531200 149680 3427100 3243800 2976600 2446700 1937900 2394300 1666600 2205500 2 2 1 2 2 2 2 2 2 2 2 937900 1487900 58.154 1703500 740750 486320 693550 875670 886420 768810 1170200 873210 1389200 66412 1704500 708520 579260 711930 867470 903410 755260 1120100 2 2 1 2 2 2 2 2 2 2 2 777910000 354890000 423010000 16256 2411 14926 83222;83223;83224;83225 100679;100680;100681;100682 100682 4 RNREEEWDPEYTPK Unmodified 1847.8438 0.84384029 3252 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 0 2 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 35.382 35.297 4 1.228E-13 11156 20211116_3441_TMUAki_TMT10x_S_F3 145.71 127.34 1954500 2962500 14396 4098900 4760600 2939200 2875600 1864400 1895000 1814100 3093600 1820000 2768600 85909 4083900 4518100 3041600 2985000 1948400 2013300 1773800 2947100 3 3 1 3 3 3 3 3 3 3 3 1035000 1433500 0 2077300 4060800 2377100 2255300 881380 813860 882040 1598400 963670 1340000 0 2078200 3848300 2369500 2337500 971630 918880 861420 1517700 1 1 0 1 1 1 1 1 1 1 1 919540 1529100 14396 2021600 699800 562120 620230 983040 1081100 932090 1495100 856280 1428600 85909 2005800 669830 672130 647560 976720 1094400 912430 1429500 2 2 1 2 2 2 2 2 2 2 2 218930000 179210000 39725000 16257 3252 14927 83226;83227;83228 100683;100684;100685 100684 3 RNSTIPTK Unmodified 915.51378 0.51377937 596 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B no no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 26.061 26.113 3 0.0063382 5177 20211116_3428_TMUAki_TMT10x_P_F1 81.263 39.815 471230 768430 6770.7 648850 494810 511340 582840 260380 319220 314470 504790 438790 716580 43201 668330 476910 523760 578430 279020 342870 304900 481210 2 2 1 2 2 2 2 2 2 2 2 144250 227230 0 192640 124070 161830 131730 60647 93662 78122 132240 134300 211900 9169.6 198510 118990 164480 132040 67291 98320 75578 126370 1 1 0 1 1 1 1 1 1 1 1 326970 541200 6770.7 456210 370750 349520 451110 199730 225560 236340 372550 304490 504680 34031 469820 357920 359280 446390 211730 244550 229320 354840 1 1 1 1 1 1 1 1 1 1 1 22786000 6846200 15939000 16258 596 14928 83229;83230 100686;100687 100686 2 RNTIQFTHTQIEAIR Unmodified 1826.9751 0.97512924 263 O60306 AQR Intron-binding protein aquarius yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 4 2 2 37.427 37.384 3;4 1.7573E-33 10918 20211116_3439_TMUAki_TMT10x_S_F1 224.55 190.28 2882400 4573800 20536 5562600 5765600 4895100 3365200 4173800 4975900 3444800 4395400 2683900 4271600 218110 5594900 5468700 5011800 3588900 4258200 4971000 3394400 4258100 5 5 3 5 5 5 5 5 5 5 5 1420400 2027600 17634 2664300 4483500 3592400 1950900 1875400 2306000 1720700 1922600 1322700 1894300 103710 2686900 4236300 3563900 2122300 1988800 2316800 1686900 1866600 3 3 2 3 3 3 3 3 3 3 3 1462000 2546300 2902.1 2898300 1282100 1302700 1414300 2298400 2669900 1724100 2472800 1361200 2377300 114400 2908000 1232400 1447900 1466600 2269400 2654200 1707600 2391500 2 2 1 2 2 2 2 2 2 2 2 529800000 342840000 186960000 16259 263 14929 83231;83232;83233;83234 100688;100689;100690;100691;100692 100692 5 RNTTIPTK Unmodified 929.52943 0.52942943 615 P11142;P11142-2;P54652 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 28.969 29.01 3 0.00067239 5605 20211116_3428_TMUAki_TMT10x_P_F1 126.55 90.1 450000 707200 868.4 599640 466190 496740 496180 210810 287050 298440 422660 418970 659490 33888 617790 447520 505960 495260 231390 305990 287870 403520 2 2 1 2 2 2 2 2 2 2 2 278920 429660 0 365140 294530 340760 266260 129220 175040 170740 269630 259670 400680 18887 376690 281410 343900 268730 143300 185420 165040 257180 1 1 0 1 1 1 1 1 1 1 1 171080 277540 868.4 234500 171660 155970 229920 81590 112010 127710 153020 159300 258810 15001 241090 166110 162070 226530 88089 120570 122830 146350 1 1 1 1 1 1 1 1 1 1 1 58833000 26971000 31862000 16260 615 14930 83235;83236 100693;100694 100693 2 RNVIFQPVAELK Unmodified 1412.814 0.81398414 1487 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 53.799 53.614 3 8.5611E-09 15447 20211116_3428_TMUAki_TMT10x_P_F1 141.13 109.49 13439000 21191000 66710 26448000 16687000 15625000 12908000 11976000 12632000 11273000 15847000 12513000 19793000 1194500 26448000 15908000 16503000 13282000 12339000 12978000 11039000 15188000 5 5 4 5 5 5 5 5 5 5 5 6575300 10413000 9379.7 12911000 10298000 10667000 7511200 5492300 5863900 5492300 7808200 6122300 9726200 606020 12961000 9804700 10889000 7713600 5845300 6106600 5364000 7472100 2 2 2 2 2 2 2 2 2 2 2 6863300 10777000 57330 13537000 6389000 4958500 5396600 6483600 6768600 5780600 8038900 6390600 10067000 588450 13487000 6102900 5614800 5568300 6494100 6870900 5674600 7715500 3 3 2 3 3 3 3 3 3 3 3 1198300000 533010000 665240000 16261 1487 14931 83237;83238;83239;83240 100695;100696;100697;100698;100699 100695 5 RNVTVQPDDPISFMQLTAK Unmodified 2159.1045 0.10448843 1206 P53618 COPB1 Coatomer subunit beta yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 67.763 67.763 3 8.8499E-24 21343 20211116_3436_TMUAki_TMT10x_P_F8 167.93 154.95 20268000 32220000 122870 35605000 22651000 19064000 22684000 9321000 9608000 12053000 21362000 18873000 30077000 1801900 35837000 21725000 20222000 22603000 10050000 10764000 11659000 20243000 5 5 4 5 5 5 5 5 5 5 5 8008300 12551000 66987 13459000 8266400 9660800 8881500 3238900 3621800 4344000 7972100 7456800 11715000 703670 13609000 7944000 9931700 8813900 3650300 4069000 4197100 7555700 2 2 1 2 2 2 2 2 2 2 2 12260000 19668000 55881 22146000 14385000 9402700 13803000 6082100 5986300 7708900 13390000 11416000 18362000 1098300 22227000 13781000 10290000 13789000 6400100 6694800 7461900 12687000 3 3 3 3 3 3 3 3 3 3 3 1444900000 634300000 810630000 16262 1206 14932 83241;83242 100700;100701;100702;100703;100704 100700 5 RNVTVQPDDPISFMQLTAK Oxidation (M) 2175.0994 0.099403054 1206 P53618 COPB1 Coatomer subunit beta yes yes 0 0 1 1 By MS/MS 7 0 1 1 57.328 57.85 3 2.2241E-12 19039 20211116_3446_TMUAki_TMT10x_S_F7 128.79 111.51 2850800 4887800 88509 5219900 3455800 2912500 2745800 4411600 5107900 4463800 4639900 2655100 4562100 327310 5267200 3301100 3143000 2895500 4411300 5076400 4357500 4490500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2850800 4887800 88509 5219900 3455800 2912500 2745800 4411600 5107900 4463800 4639900 2655100 4562100 327310 5267200 3301100 3143000 2895500 4411300 5076400 4357500 4490500 1 1 1 1 1 1 1 1 1 1 1 476280000 0 476280000 16263 1206 14932 83243 100705 100705 1618 1 RNYILDQTNVYGSAQR Unmodified 1896.9442 0.94422304 2675 Q9BUJ2;Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2-3 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 41.774 41.817 3 3.1647E-21 10183 20211116_3447_TMUAki_TMT10x_S_F8 169.15 150.42 2263900 3991500 11323 4357200 4581000 4277200 2853700 3030200 3518300 2825000 3691200 2108000 3725900 82323 4418000 4349700 4334200 3005500 3137700 3556300 2767500 3555400 3 3 2 3 3 3 3 3 3 3 3 1355800 2512100 0 2484000 3923900 3747400 2393300 1699200 2035300 1678200 2230000 1262400 2343900 0 2555000 3723900 3693700 2496600 1830400 2093100 1639900 2145200 1 1 0 1 1 1 1 1 1 1 1 908070 1479500 11323 1873200 657090 529750 460450 1331000 1483000 1146800 1461200 845590 1382000 82323 1863000 625790 640540 508990 1307300 1463200 1127600 1410300 2 2 2 2 2 2 2 2 2 2 2 782960000 523420000 259550000 16264 2675 14933 83244;83245;83246;83247 100706;100707;100708 100708 3 RPAEDMEEEQAFK Unmodified 1578.6984 0.69842161 1329;1330 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 1 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 38.528 38.42 3 2.5974E-23 10925 20211116_3429_TMUAki_TMT10x_P_F2 215.51 174.96 6326800 8838900 24507 16131000 10886000 5219500 6355300 2610700 3247200 2798500 7875700 5890900 8274900 582780 15778000 10324000 5931700 6587100 2791700 3603700 2725500 7454100 6 6 4 6 6 6 6 6 6 6 6 2692100 3665700 5382.5 6506800 9034300 3889500 3791500 963610 1299100 1183500 3195100 2506400 3431100 290020 6398200 8529200 4058000 4042800 1134000 1498000 1146800 3023500 2 2 1 2 2 2 2 2 2 2 2 3634800 5173200 19125 9624300 1851500 1330100 2563800 1647100 1948100 1615000 4680700 3384500 4843800 292760 9379900 1794300 1873700 2544300 1657700 2105700 1578600 4430700 4 4 3 4 4 4 4 4 4 4 4 975360000 598630000 376730000 16265 1329;1330 14934 83248;83249;83250;83251;83252 100709;100710;100711;100712;100713;100714 100710 6 RPAEDMEEEQAFK Oxidation (M) 1594.6933 0.69333623 1329;1330 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 1 1 By MS/MS By MS/MS 2 0.756 2 3 2 3 4 33.637 33.519 3;4 5.0805E-07 10399 20211116_3441_TMUAki_TMT10x_S_F3 119.17 98.215 3399100 4926000 75084 7887700 8869900 4803500 4135900 1937600 3193200 1912200 4474600 3165500 4607600 428410 7791400 8390400 5019300 4413600 2113900 3335300 1868600 4276800 5 5 5 5 5 5 5 5 5 5 5 2206900 3073800 54469 5073000 8224200 4148700 2959800 1407700 2137600 1191900 2824600 2055300 2875600 318010 5020300 7756700 4221900 3252000 1563200 2235000 1172900 2703600 2 2 2 2 2 2 2 2 2 2 2 1192200 1852200 20615 2814700 645620 654730 1176100 529860 1055600 720300 1650000 1110200 1731900 110400 2771200 633640 797420 1161500 550730 1100200 695640 1573300 3 3 3 3 3 3 3 3 3 3 3 725270000 518200000 207060000 16266 1329;1330 14934 83253;83254;83255;83256;83257;83258;83259 100715;100716;100717;100718;100719 100719 1785 5 RPAEDMEEEQAFKR Oxidation (M) 1750.7944 0.79444726 1329;1330 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 1 2 By MS/MS By MS/MS 2.5 0.957 1 2 2 1 4 2 31.013 30.873 3;4 4.2336E-09 9375 20211116_3441_TMUAki_TMT10x_S_F3 122.12 111.63 1277300 2129500 18307 1999700 3467200 3308100 2082100 3198000 3545900 2163300 2673900 1189400 1986500 145090 2068700 3290500 3286900 2229700 3226000 3512300 2155400 2606500 6 6 4 6 6 6 6 6 6 6 6 689230 1076500 6335.6 1064200 2697000 2442300 1244100 1552000 1628200 1055800 1286400 641750 1004400 86473 1107100 2549500 2383000 1349800 1608000 1627500 1051600 1251500 3 3 2 3 3 3 3 3 3 3 3 588090 1053000 11971 935480 770190 865830 838010 1646000 1917600 1107500 1387600 547660 982130 58615 961610 740930 903880 879900 1618000 1884800 1103800 1354900 3 3 2 3 3 3 3 3 3 3 3 445990000 265520000 180480000 16267 1329;1330 14935 83260;83261;83262;83263;83264;83265 100720;100721;100722;100723;100724;100725;100726 100724 1785 7 RPAEDMEEEQAFKR Unmodified 1734.7995 0.79953264 1329;1330 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 2 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 34.054 33.823 4 1.8394E-29 9041 20211116_3429_TMUAki_TMT10x_P_F2 208.39 183.69 1219400 2111700 7947.1 1894000 2917700 2289000 1964600 1793800 1232100 1405900 2166700 1135400 1969600 126070 1953500 2773700 2296400 2020000 1837200 1318700 1389000 2061200 2 2 1 2 2 2 2 2 2 2 2 463200 759660 0 744750 1791000 1481900 972760 626130 523970 516530 786410 431240 708790 50788 771850 1696300 1445000 1015600 676520 562000 508990 750500 1 1 0 1 1 1 1 1 1 1 1 756150 1352100 7947.1 1149300 1126700 807050 991890 1167700 708160 889360 1380300 704110 1260900 75287 1181700 1077400 851380 1004400 1160700 756700 880060 1310700 1 1 1 1 1 1 1 1 1 1 1 185130000 100450000 84680000 16268 1329;1330 14935 83266;83267 100727;100728 100727 2 RPAGGPQNQFPFQFGR Unmodified 1802.8965 0.89648499 111 O14497;O14497-3 ARID1A AT-rich interactive domain-containing protein 1A yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 49.675 49.841 3 6.2795E-29 14748 20211116_3442_TMUAki_TMT10x_S_F4 186.94 168.52 22562000 39763000 803000 42577000 35850000 46546000 27374000 34856000 33314000 31798000 33924000 21013000 37113000 2805000 43296000 34210000 46910000 28393000 35937000 33653000 31181000 32706000 7 7 7 7 7 7 7 7 7 7 7 16458000 28517000 668450 30104000 29202000 40155000 21461000 24977000 23304000 22843000 24872000 15329000 26615000 2165900 30749000 27846000 39946000 22231000 26097000 23683000 22398000 23945000 5 5 5 5 5 5 5 5 5 5 5 6104200 11246000 134540 12473000 6647700 6390800 5912600 9878800 10010000 8954800 9051400 5684600 10498000 639080 12547000 6363800 6964100 6162700 9840400 9970100 8783800 8761200 2 2 2 2 2 2 2 2 2 2 2 3964100000 2223000000 1741100000 16269 111 14936 83268;83269;83270;83271 100729;100730;100731;100732;100733;100734;100735 100734 7 RPANQFVPR Unmodified 1083.5938 0.59376103 1412 P67870 CSNK2B Casein kinase II subunit beta yes yes 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 4 2 2 4 4 29.433 29.329 2;3 3.5812E-06 7592 20211116_3439_TMUAki_TMT10x_S_F1 172.21 143.81 1354300 2182100 6532.6 2083700 1949000 1949700 1498800 1341100 1447700 1307700 1754800 1261000 2035800 110640 2130700 1857100 1980800 1542200 1393200 1485900 1278600 1683300 8 8 4 8 8 8 8 8 8 8 8 718570 1202100 5001.1 1092600 1249700 1337400 775530 733360 781200 720940 965540 669020 1121200 61062 1126100 1185900 1333800 811620 775750 801030 704620 925710 4 4 2 4 4 4 4 4 4 4 4 635740 980070 1531.5 991080 699320 612330 723230 607710 666510 586800 789290 591940 914550 49581 1004600 671150 647060 730590 617480 684900 573960 757600 4 4 2 4 4 4 4 4 4 4 4 308160000 185330000 122830000 16270 1412 14937 83272;83273;83274;83275;83276;83277;83278;83279 100736;100737;100738;100739;100740;100741;100742;100743 100740 8 RPAVASARPSILPSK Unmodified 1548.91 0.91000979 833 P27816;P27816-6;P27816-2;P27816-5;P27816-4 MAP4 Microtubule-associated protein 4 yes no 0 0 0 2 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 34.829 34.88 4 7.2467E-05 8395 20211116_3431_TMUAki_TMT10x_P_F4 94.569 71.25 4380000 6591700 13039 7159700 6502700 6034600 4947300 4108700 4545000 4521900 5347100 4077900 6152900 350040 7247200 6193200 6173800 5087100 4287000 4669900 4399300 5133400 3 3 1 3 3 3 3 3 3 3 3 1954400 2952800 13039 3319300 4130500 3685000 2196300 1898800 2168000 2036600 2457100 1819600 2756600 180270 3365800 3911100 3691300 2328100 2024900 2217100 1983400 2361300 2 2 1 2 2 2 2 2 2 2 2 2425700 3638900 0 3840400 2372100 2349700 2751000 2209800 2377000 2485300 2890000 2258300 3396300 169770 3881300 2282000 2482500 2759000 2262100 2452800 2415900 2772000 1 1 0 1 1 1 1 1 1 1 1 352190000 270860000 81331000 16271 833 14938 83280;83281;83282 100744;100745;100746 100744 3 RPCFSALTPDETYVPK Unmodified 1879.9138 0.91383411 38 CON__P02769 yes yes 0 0 0 1 By MS/MS By MS/MS 6.75 0.968 2 4 6 4 8 8 53.231 53.485 2;3;4 1.5665E-30 16700 20211116_3435_TMUAki_TMT10x_P_F7 182.23 152.94 + 109290000 161000000 2780700 151300000 143290000 139710000 111620000 264130000 271410000 229240000 181190000 101780000 150200000 11459000 154860000 136720000 145840000 119820000 261220000 265920000 225320000 177580000 26 26 15 26 26 26 26 26 26 26 26 41652000 61442000 943180 58057000 71281000 96616000 68899000 89701000 90575000 77079000 64964000 38787000 57319000 4575100 60043000 68333000 95892000 70683000 91173000 90288000 75799000 63461000 13 13 10 13 13 13 13 13 13 13 13 67639000 99560000 1837500 93240000 72012000 43099000 42717000 174430000 180830000 152160000 116230000 62988000 92876000 6884000 94817000 68391000 49951000 49137000 170050000 175630000 149520000 114120000 13 13 5 13 13 13 13 13 13 13 13 38869000000 19552000000 19317000000 16272 38 14939 83283;83284;83285;83286;83287;83288;83289;83290;83291;83292;83293;83294;83295;83296;83297;83298 100747;100748;100749;100750;100751;100752;100753;100754;100755;100756;100757;100758;100759;100760;100761;100762;100763;100764;100765;100766;100767;100768;100769;100770;100771;100772;100773 100755 27 RPCPFWNDISQCGR Unmodified 1791.7933 0.79334182 2484 Q96HE7 ERO1L ERO1-like protein alpha yes yes 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 47.23 47.059 3 7.1202E-17 13092 20211116_3440_TMUAki_TMT10x_S_F2 160.44 145.46 8745300 12530000 112810 14547000 16074000 17969000 10613000 15582000 12972000 11954000 11418000 8142900 11700000 843790 14749000 15276000 18041000 11123000 15855000 13039000 11824000 11063000 3 3 2 3 3 3 3 3 3 3 3 7051300 9984200 49236 11595000 14077000 16413000 9182700 12999000 10797000 10021000 9204900 6565100 9322400 639850 11787000 13372000 16347000 9620300 13299000 10857000 9909300 8928900 2 2 1 2 2 2 2 2 2 2 2 1694000 2546000 63578 2952400 1996800 1555600 1430000 2583800 2175600 1933100 2213100 1577800 2377200 203940 2962300 1904200 1694000 1503200 2555700 2182000 1914800 2133800 1 1 1 1 1 1 1 1 1 1 1 537740000 351340000 186400000 16273 2484 14940 83299;83300 100774;100775;100776 100776 3 RPCTIQVPEPILR Unmodified 1577.8712 0.87118144 2055 Q7L2E3;Q7L2E3-2;Q7L2E3-3 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 46.721 46.673 3 3.7985E-09 12647 20211116_3428_TMUAki_TMT10x_P_F1 128.85 98.591 8692400 14354000 252910 15179000 12476000 13344000 10251000 14155000 13778000 11565000 13562000 8095300 13397000 1009300 15400000 11921000 13725000 10623000 14273000 13854000 11401000 13090000 4 4 4 4 4 4 4 4 4 4 4 4295100 6876600 112870 7479200 8049300 9231800 6285500 6541400 6568400 5398400 6590600 4000000 6418800 513870 7613600 7680600 9236200 6476700 6752400 6670700 5319400 6357000 2 2 2 2 2 2 2 2 2 2 2 4397200 7477600 140030 7700300 4426200 4112000 3965000 7613300 7209100 6166200 6971700 4095300 6978200 495470 7786200 4240900 4489000 4146400 7520600 7183600 6081800 6732700 2 2 2 2 2 2 2 2 2 2 2 867120000 487910000 379220000 16274 2055 14941 83301;83302;83303;83304 100777;100778;100779;100780 100777 4 RPDADLK Unmodified 813.43447 0.43446642 834 P27824;P27824-2;P27824-3 CANX Calnexin yes no 0 0 0 1 By MS/MS By MS/MS 3.25 1.48 1 1 1 1 2 2 29.948 29.892 3 0.0032554 6331 20211116_3431_TMUAki_TMT10x_P_F4 106.91 39.879 3992700 6028100 47627 4883900 4092900 5302900 4019400 2602000 2608400 2680600 4297500 3717900 5620600 369960 5069500 3925000 5315700 4037200 2784200 2775300 2614700 4093400 3 3 2 3 3 3 3 3 3 3 3 3446900 5122800 36747 4170600 3435800 4722400 3287900 2227500 2228800 2318100 3702800 3209600 4776600 313010 4330200 3292400 4720800 3310000 2393400 2366100 2260200 3526300 2 2 1 2 2 2 2 2 2 2 2 545790 905260 10880 713380 657100 580470 731470 374570 379610 362470 594720 508260 843990 56948 739330 632590 594920 727180 390870 409210 354500 567040 1 1 1 1 1 1 1 1 1 1 1 111240000 89309000 21929000 16275 834 14942 83305;83306;83307;83308 100781;100782;100783 100781 3 RPDDTAFQIVELR Unmodified 1558.8104 0.81035532 392 O94901;O94901-9;O94901-6;O94901-5;O94901-8 SUN1 SUN domain-containing protein 1 yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 54.98 55.058 3 6.673E-06 15557 20211116_3444_TMUAki_TMT10x_S_F5 96.247 78.922 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16276 392 14943 83309;83310 100784;100785 100785 2 RPDFAQQQAMQQLTFDGK Oxidation (M) 2124.0058 0.0058370195 2750 Q9C0J8;Q9C0J8-2;Q9C0J8-3 WDR33 pre-mRNA 3' end processing protein WDR33 yes no 0 0 1 1 By MS/MS 7 0 1 1 48.561 49.185 3 0.0091197 14987 20211116_3435_TMUAki_TMT10x_P_F7 48.477 33.387 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16277 2750 14944 83311 100786 100786 2934 1 RPDFAQQQAMQQLTFDGKR Oxidation (M) 2280.1069 0.10694805 2750 Q9C0J8;Q9C0J8-2;Q9C0J8-3 WDR33 pre-mRNA 3' end processing protein WDR33 yes no 0 0 1 2 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 41.86 41.885 4 1.9799E-12 12769 20211116_3439_TMUAki_TMT10x_S_F1 132.62 106.79 609110 1068400 8538.2 1234400 1832400 1638500 946100 1352900 1355100 1069700 1290100 567110 997530 62754 1253600 1734400 1637800 1018700 1381500 1358400 1056300 1246500 2 2 1 2 2 2 2 2 2 2 2 438240 764120 0 892120 1639500 1425400 795860 878530 887220 679020 939540 407950 713490 40321 909040 1549900 1407000 854210 914850 900460 671390 904720 1 1 0 1 1 1 1 1 1 1 1 170870 304250 8538.2 342290 192950 213030 150240 474360 467910 390630 350580 159160 284040 22433 344580 184450 230870 164460 466610 457960 384960 341820 1 1 1 1 1 1 1 1 1 1 1 349100000 213730000 135370000 16278 2750 14945 83312;83313;83314;83315 100787;100788 100788 2934 2 RPDLLTMVVDYR Oxidation (M) 1492.7708 0.77079869 1772 Q15121;Q15121-2 PEA15 Astrocytic phosphoprotein PEA-15 yes no 0 0 1 1 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 54.201 54.822 3 0.00018145 17777 20211116_3446_TMUAki_TMT10x_S_F7 85.909 58.94 4808800 8220600 114000 8553000 6815300 7827100 5601100 8048800 6921900 6444000 7114800 4478300 7671900 533030 8691100 6511200 8023500 5785800 8124300 6990900 6359700 6857500 2 2 2 2 2 2 2 2 2 2 2 2151900 3332900 21059 3477000 3084600 5067800 2916400 3450600 2704800 2604000 2923000 2003800 3110500 211100 3560700 2954700 5028300 2960500 3564600 2768700 2578100 2812900 1 1 1 1 1 1 1 1 1 1 1 2656900 4887700 92939 5076000 3730700 2759300 2684700 4598200 4217100 3840000 4191900 2474500 4561400 321930 5130400 3556500 2995200 2825300 4559700 4222200 3781600 4044500 1 1 1 1 1 1 1 1 1 1 1 1071500000 496060000 575480000 16279 1772 14946 83316;83317;83318 100789;100790;100791 100791 2377 3 RPDQQLQGEGK Unmodified 1254.6317 0.63166267 2232 Q8NC51;Q8NC51-3;Q8NC51-2;Q8NC51-4 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 30.193 30.179 3 2.8864E-11 6427 20211116_3431_TMUAki_TMT10x_P_F4 168.61 129.3 1527100 2449600 18562 2370400 2274500 2400200 1606400 916030 1060000 1040700 1658500 1422000 2285400 154370 2424200 2165300 2409900 1647400 1010000 1123500 1011300 1581400 3 3 3 3 3 3 3 3 3 3 3 1527100 2449600 18562 2370400 2274500 2400200 1606400 916030 1060000 1040700 1658500 1422000 2285400 154370 2424200 2165300 2409900 1647400 1010000 1123500 1011300 1581400 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 64632000 64632000 0 16280 2232 14947 83319;83320 100792;100793;100794 100792 3 RPDVVENQPDAASQLNVDASGNLAK Unmodified 2607.2889 0.2888714 3036 Q9NZL9;Q9NZL9-2;Q9NZL9-3;Q9NZL9-4 MAT2B Methionine adenosyltransferase 2 subunit beta yes no 0 0 0 1 By MS/MS By MS/MS 4.8 0.4 1 4 2 3 49.809 49.984 3;4 8.7865E-61 13562 20211116_3444_TMUAki_TMT10x_S_F5 233.5 212.26 5695200 9900900 99687 10659000 6851700 8547000 5639100 8612000 8538300 7712000 8402300 5303500 9241400 574790 10789000 6544800 8838900 5873200 8725900 8554600 7569000 8109600 6 6 3 6 6 6 6 6 6 6 6 2041200 3234400 65932 3691900 3746900 5285400 2827500 2840600 2864400 2642800 2734700 1901100 3019700 251260 3757900 3573300 5231200 2917200 3005600 2907900 2589200 2642100 2 2 1 2 2 2 2 2 2 2 2 3653900 6666500 33756 6967300 3104800 3261600 2811700 5771500 5673900 5069200 5667600 3402400 6221700 323530 7031100 2971500 3607600 2955900 5720300 5646700 4979800 5467600 4 4 2 4 4 4 4 4 4 4 4 1788000000 792640000 995360000 16281 3036 14948 83321;83322;83323;83324;83325 100795;100796;100797;100798;100799;100800;100801 100800 7 RPEHGGPPELFYDETEAR Unmodified 2098.9708 0.97083172 237 O43709;O43709-3;O43709-2 WBSCR22 Probable 18S rRNA (guanine-N(7))-methyltransferase yes no 0 0 0 1 By matching By MS/MS 2 0 2 1 1 38.93 38.847 4 0.00022891 9646 20211116_3440_TMUAki_TMT10x_S_F2 66.448 56.868 134510 268320 4354.3 288640 143050 114490 125990 185750 203800 163700 214400 125270 250450 15329 290430 137000 128980 131100 184600 204310 160790 206500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 134510 268320 4354.3 288640 143050 114490 125990 185750 203800 163700 214400 125270 250450 15329 290430 137000 128980 131100 184600 204310 160790 206500 1 1 1 1 1 1 1 1 1 1 1 113860000 87388000 26473000 16282 237 14949 83326;83327 100802 100802 1 RPEIPTEQSREENLIPYSPDVQIHAER Unmodified 3202.6007 0.60070348 2206 Q8N766;Q8N766-4;Q8N766-3;Q8N766-2 EMC1 ER membrane protein complex subunit 1 yes no 0 0 0 2 By MS/MS By MS/MS 5 0.707 1 2 1 2 2 48.359 48.523 5 9.9696E-42 13742 20211116_3431_TMUAki_TMT10x_P_F4 184.29 170.22 6650800 9425400 71050 10682000 11797000 12337000 7583000 8941900 8797000 7640900 9341000 6192400 8799600 405100 10834000 11205000 12390000 7949700 9223900 8915600 7516100 8994100 4 4 2 4 4 4 4 4 4 4 4 5281300 7230700 55629 8289500 10310000 11342000 6711500 6821600 6865500 6102300 7431000 4917300 6751000 275550 8427500 9794100 11265000 7000700 7142300 6997800 5989400 7150900 3 3 1 3 3 3 3 3 3 3 3 1369400 2194700 15420 2392800 1486700 994670 871500 2120300 1931500 1538700 1910000 1275200 2048600 129550 2406200 1411000 1124800 948980 2081600 1917800 1526700 1843100 1 1 1 1 1 1 1 1 1 1 1 2974300000 2236600000 737750000 16283 2206 14950 83328;83329;83330;83331 100803;100804;100805;100806 100803 4 RPELGVTLTK Unmodified 1112.6554 0.65535823 1060 P46976;P46976-2;P46976-3 GYG1 Glycogenin-1 yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 41.536 41.713 3 0.0003261 10192 20211116_3447_TMUAki_TMT10x_S_F8 103.76 73.951 3849800 5993600 15017 6448800 5354000 5236500 4596900 4760800 4151800 4313000 5150600 3584700 5594400 352840 6528600 5115400 5398700 4688600 4851100 4278700 4230700 4937700 2 2 1 2 2 2 2 2 2 2 2 1729900 2565900 0 2874700 3042200 3430400 2315000 2099700 1672200 1781900 2279100 1610700 2395400 160400 2919200 2898700 3430500 2366400 2192500 1750800 1753400 2179800 1 1 0 1 1 1 1 1 1 1 1 2120000 3427700 15017 3574100 2311800 1806100 2281800 2661100 2479700 2531100 2871500 1974000 3199000 192440 3609400 2216800 1968200 2322300 2658600 2527900 2477300 2757900 1 1 1 1 1 1 1 1 1 1 1 398450000 251360000 147090000 16284 1060 14951 83332;83333;83334 100807;100808;100809 100809 3 RPELLTHSTTEVTQPR Unmodified 1863.9803 0.9802742 1428 P78347;P78347-2;P78347-4;P78347-3 GTF2I General transcription factor II-I yes no 0 0 0 1 By MS/MS By MS/MS 3 2 1 1 1 1 32.435 32.42 4 0.00041215 7672 20211116_3433_TMUAki_TMT10x_P_F5 72.433 56.179 1314500 2174500 14588 2169400 3014000 2409800 1445000 1115300 1400400 1199200 1526100 1224000 2029000 146380 2217100 2851400 2411000 1546400 1201800 1431000 1167800 1468200 2 2 2 2 2 2 2 2 2 2 2 1189000 1960100 14221 1926700 2888500 2317700 1333600 993220 1279200 1092400 1350400 1107200 1828900 135630 1973800 2731400 2307200 1432400 1079600 1306300 1062800 1300500 1 1 1 1 1 1 1 1 1 1 1 125450 214340 366.93 242700 125490 92140 111400 122040 121160 106800 175610 116810 200110 10743 243340 119990 103830 114040 122110 124760 104930 167720 1 1 1 1 1 1 1 1 1 1 1 174870000 163420000 11445000 16285 1428 14952 83335;83336 100810;100811 100810 2 RPENSLLEETLHFDHAVR Unmodified 2162.0869 0.086864532 102 O00566 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes yes 0 0 0 1 By MS/MS By matching 4.5 0.5 1 1 1 1 49.286 49.454 5 1.6293E-17 14132 20211116_3431_TMUAki_TMT10x_P_F4 149.52 131.36 1257700 1932800 39318 2151300 2095400 2569100 1567600 1500400 1650800 1407600 1567400 1171200 1804400 141140 2185500 1997500 2567400 1620300 1576700 1672800 1378500 1514600 2 2 1 2 2 2 2 2 2 2 2 1257700 1932800 39318 2151300 2095400 2569100 1567600 1500400 1650800 1407600 1567400 1171200 1804400 141140 2185500 1997500 2567400 1620300 1576700 1672800 1378500 1514600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 397890000 167180000 230700000 16286 102 14953 83337;83338 100812;100813 100812 2 RPFDPNDR Unmodified 1015.4835 0.48354187 1855 Q16629;Q16629-3;Q16629-2;Q16629-4 SRSF7 Serine/arginine-rich splicing factor 7 yes no 0 0 0 1 By MS/MS By MS/MS 3.25 0.829 1 1 2 3 1 28.884 28.822 2;3 0.0011353 8631 20211116_3441_TMUAki_TMT10x_S_F3 114.86 77.047 689510 1105200 218.42 1087700 1010700 961460 832210 635760 673510 601600 838760 641940 1031200 53942 1109000 964120 979950 848570 661810 697990 588960 804010 3 3 1 3 3 3 3 3 3 3 3 438910 680610 218.42 684030 729520 727260 485270 363990 392260 357470 534030 408650 635100 38605 698230 693240 730050 502120 388220 408160 349390 510770 2 2 1 2 2 2 2 2 2 2 2 250610 424580 0 403720 281180 234210 346940 271770 281250 244130 304730 233290 396100 15337 410790 270880 249890 346440 273590 289840 239570 293240 1 1 0 1 1 1 1 1 1 1 1 48476000 30695000 17781000 16287 1855 14954 83339;83340;83341;83342 100814;100815;100816;100817 100817 4 RPFDPNDRCYECGEK Unmodified 1941.8098 0.80977975 1855 Q16629;Q16629-3;Q16629-2;Q16629-4 SRSF7 Serine/arginine-rich splicing factor 7 yes no 0 0 0 2 By MS/MS 4.5 0.5 1 1 2 33.81 33.795 4 1.0958E-19 8183 20211116_3433_TMUAki_TMT10x_P_F5 176.17 159.86 1552400 2311900 9141.8 4094500 9185200 4310800 2297900 1882800 2021200 1179700 2574200 1445300 2163900 216610 4054400 8632800 4323600 2682400 2015800 2088000 1181100 2466100 2 2 1 2 2 2 2 2 2 2 2 1552400 2311900 9141.8 4094500 9185200 4310800 2297900 1882800 2021200 1179700 2574200 1445300 2163900 216610 4054400 8632800 4323600 2682400 2015800 2088000 1181100 2466100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 336120000 336120000 0 16288 1855 14955 83343;83344 100818;100819 100819 2 RPFLEPK Unmodified 885.50724 0.50723743 1428 P78347;P78347-2;P78347-4;P78347-3;P78347-5 GTF2I General transcription factor II-I yes no 0 0 0 1 By MS/MS By MS/MS 6.75 2.59 2 1 9 8 4 32.373 32.601 3 0.0057265 7904 20211116_3436_TMUAki_TMT10x_P_F8 98.523 33.766 5052100 7977100 148860 8295600 7789100 9590900 6536200 10175000 6035100 7411700 7021800 4705100 7444700 595920 8459800 7446100 9703800 6679900 10233000 6196600 7352500 6743100 8 8 8 8 8 8 8 8 8 8 8 2898200 4459300 112240 4522400 5762300 7583700 4264000 7719700 3634200 5083600 4148000 2699300 4161200 384990 4654900 5494300 7540000 4384000 7763100 3743000 5073500 3985500 5 5 5 5 5 5 5 5 5 5 5 2153900 3517900 36625 3773200 2026800 2007300 2272100 2455400 2400900 2328100 2873800 2005700 3283500 210930 3804800 1951800 2163900 2295900 2470100 2453600 2279000 2757600 3 3 3 3 3 3 3 3 3 3 3 260260000 151600000 108660000 16289 1428 14956 83345;83346;83347;83348;83349;83350;83351;83352;83353;83354;83355;83356 100820;100821;100822;100823;100824;100825;100826;100827;100828;100829;100830;100831 100823 12 RPGAALDPGCVLAK Unmodified 1423.7606 0.76056836 1591 Q13085;Q13085-4;Q13085-3;Q13085-2 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 0 0 0 1 By MS/MS 8 0 1 1 46.048 46.185 3 3.882E-05 12566 20211116_3436_TMUAki_TMT10x_P_F8 98.943 77.642 1182100 1845400 18499 2197600 2796800 2960400 1500000 1782400 1852200 1479300 1780400 1100800 1723300 137860 2228400 2650300 2942300 1600300 1862600 1866300 1457200 1719700 1 1 1 1 1 1 1 1 1 1 1 1182100 1845400 18499 2197600 2796800 2960400 1500000 1782400 1852200 1479300 1780400 1100800 1723300 137860 2228400 2650300 2942300 1600300 1862600 1866300 1457200 1719700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 407980000 407980000 0 16290 1591 14957 83357 100832 100832 1 RPGEEGTVMSLAGK Oxidation (M) 1446.7137 0.71367774 457 O96008;O96008-2 TOMM40 Mitochondrial import receptor subunit TOM40 homolog yes no 0 0 1 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.211 35.265 3 0.016555 7513 20211116_3444_TMUAki_TMT10x_S_F5 49.066 22.097 744650 1061700 11149 1458200 1803100 1479300 975560 1008700 1059300 759210 1137900 693430 992150 86952 1459900 1708800 1495100 1035400 1041900 1076800 751770 1095300 2 2 2 2 2 2 2 2 2 2 2 530230 697850 8691.1 1031500 1649200 1284700 753500 734960 748140 510560 776730 493760 652420 67732 1032500 1559400 1280800 810980 768290 762350 507880 748400 1 1 1 1 1 1 1 1 1 1 1 214420 363830 2458.2 426710 153860 194630 222060 273750 311210 248660 361210 199660 339730 19220 427410 149390 214370 224440 273590 314470 243880 346900 1 1 1 1 1 1 1 1 1 1 1 131350000 114150000 17204000 16291 457 14958 83358;83359;83360 100833;100834 100834 337 2 RPGEEGTVMSLAGK Unmodified 1430.7188 0.71876312 457 O96008;O96008-2 TOMM40 Mitochondrial import receptor subunit TOM40 homolog yes no 0 0 0 1 By matching By MS/MS 5 0 2 1 1 43.224 43.342 3 0.11033 10875 20211116_3444_TMUAki_TMT10x_S_F5 32.702 16.352 2449700 4073800 0 5725300 1607700 1612800 1609100 3721800 4908200 3600500 3899400 2280800 3807500 174530 5662600 1540500 1944100 1734200 3674000 4813100 3521400 3792800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2449700 4073800 0 5725300 1607700 1612800 1609100 3721800 4908200 3600500 3899400 2280800 3807500 174530 5662600 1540500 1944100 1734200 3674000 4813100 3521400 3792800 1 1 0 1 1 1 1 1 1 1 1 159680000 112120000 47564000 16292 457 14958 83361;83362 100835 100835 1 RPGGPSNVLR Unmodified 1051.5887 0.58867565 1946 Q5VIR6;Q5VIR6-2;Q5VIR6-3;Q5VIR6-1 VPS53 Vacuolar protein sorting-associated protein 53 homolog yes no 0 0 0 1 By MS/MS 2 0 1 1 27.828 27.591 3 0.051858 6601 20211116_3429_TMUAki_TMT10x_P_F2 50.207 17.119 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16293 1946 14959 83363 100836 100836 1 RPGQAPPDQEALQVVYER Unmodified 2052.0389 0.038851707 3147 Q9UJY4 GGA2 ADP-ribosylation factor-binding protein GGA2 yes yes 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 44.722 44.884 3 4.4236E-31 12689 20211116_3442_TMUAki_TMT10x_S_F4 184.27 166.87 3430500 5355700 60004 6481400 7206500 6684400 3999900 4550000 4988100 3155700 5010800 3194200 5001600 340530 6535600 6829500 6749100 4255500 4692100 5032100 3139400 4833000 2 2 1 2 2 2 2 2 2 2 2 1941500 3001900 60004 3587800 5755100 5530300 2723100 2971700 3063000 1718400 2987900 1808100 2803300 270290 3647800 5445700 5456600 2931200 3113100 3098600 1729900 2884700 1 1 1 1 1 1 1 1 1 1 1 1489000 2353700 0 2893600 1451400 1154000 1276800 1578300 1925000 1437300 2022800 1386000 2198300 70238 2887800 1383800 1292500 1324400 1579100 1933500 1409600 1948300 1 1 0 1 1 1 1 1 1 1 1 643460000 361320000 282140000 16294 3147 14960 83364;83365;83366 100837;100838;100839 100839 3 RPGSAATTKPIVR Unmodified 1352.7888 0.78883202 3207 Q9UPN4;Q9UPN4-2;Q9UPN4-3 CEP131 Centrosomal protein of 131 kDa yes no 0 0 0 2 By MS/MS 4 0 1 1 28.134 28.183 4 0.00030292 5619 20211116_3431_TMUAki_TMT10x_P_F4 86.413 70.522 1181400 1737500 23024 1465900 1086200 1568300 941670 688780 797370 804110 1337300 1100200 1620200 118070 1516200 1039300 1571600 958270 748140 836660 780580 1273300 3 3 3 3 3 3 3 3 3 3 3 1181400 1737500 23024 1465900 1086200 1568300 941670 688780 797370 804110 1337300 1100200 1620200 118070 1516200 1039300 1571600 958270 748140 836660 780580 1273300 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13327000 13327000 0 16295 3207 14961 83367 100840;100841;100842 100840 3 RPGVPGAPLPGR Unmodified 1172.6778 0.67782501 3057 Q9P265 DIP2B Disco-interacting protein 2 homolog B yes yes 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 32.623 32.514 3 6.1695E-06 6982 20211116_3428_TMUAki_TMT10x_P_F1 109.24 85.081 2062000 3398900 23102 3696200 3739000 3627200 2373800 2960300 3155200 2636700 3133100 1920000 3172700 205720 3748700 3551500 3684400 2503400 3033800 3174900 2588500 3023000 4 4 3 4 4 4 4 4 4 4 4 1176600 1840800 2377.5 2026700 2916100 2869100 1600900 1588400 1727900 1480700 1743900 1095500 1718400 113870 2067100 2762600 2842100 1696600 1676400 1752800 1450500 1681800 2 2 1 2 2 2 2 2 2 2 2 885420 1558100 20724 1669400 822820 758070 772880 1371800 1427300 1156100 1389100 824570 1454300 91845 1681600 788960 842280 806840 1357400 1422000 1138000 1341200 2 2 2 2 2 2 2 2 2 2 2 138380000 91481000 46898000 16296 3057 14962 83368;83369;83370;83371 100843;100844;100845;100846 100843 4 RPGVTGENSNEVAK Unmodified 1456.727 0.72701962 2076 Q7Z3K3;Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-6;Q7Z3K3-3;Q7Z3K3-4 POGZ Pogo transposable element with ZNF domain yes no 0 0 0 1 By MS/MS 4 0 1 1 29.279 29.318 3 0.036972 6121 20211116_3431_TMUAki_TMT10x_P_F4 43.297 22.835 151230 237920 117.12 216300 365170 330410 212230 154030 196980 147520 184900 140810 221930 15643 223900 346300 325600 222800 165320 200630 144350 178740 1 1 1 1 1 1 1 1 1 1 1 151230 237920 117.12 216300 365170 330410 212230 154030 196980 147520 184900 140810 221930 15643 223900 346300 325600 222800 165320 200630 144350 178740 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15222000 15222000 0 16297 2076 14963 83372 100847 100847 1 RPHTPTPGIYMGR Oxidation (M) 1497.7511 0.7510663 1389 P62995;P62995-3 TRA2B Transformer-2 protein homolog beta yes no 0 0 1 1 By MS/MS 1.5 0.5 1 1 2 29.198 29.081 4 0.047281 5641 20211116_3428_TMUAki_TMT10x_P_F1 40.676 24.102 126940 201260 0 198680 187810 187560 132470 91403 89853 94647 140340 118160 187790 7547.2 202700 178440 189600 135950 97882 95067 92304 133820 1 1 0 1 1 1 1 1 1 1 1 126940 201260 0 198680 187810 187560 132470 91403 89853 94647 140340 118160 187790 7547.2 202700 178440 189600 135950 97882 95067 92304 133820 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13495000 13495000 0 16298 1389 14964 83373;83374 100848 100848 1866 1 RPHTPTPGIYMGRPTYGSSR Oxidation (M) 2246.1015 0.10146874 1389 P62995;P62995-3 TRA2B Transformer-2 protein homolog beta yes no 0 0 1 2 By MS/MS By MS/MS 3.75 0.968 1 2 3 2 6 2 30.28 30.184 3;4;5 2.506E-10 6340 20211116_3431_TMUAki_TMT10x_P_F4 121.03 111.24 1754200 2819000 23907 3049200 3547300 4058100 2245700 2184800 2346400 1976700 2381100 1633400 2631300 172800 3109500 3368700 4029800 2349100 2309700 2383900 1939100 2295900 11 11 6 11 11 11 11 11 11 11 11 1577000 2510400 23907 2735700 3390800 3901200 2071500 1967400 2081500 1761400 2096600 1468400 2343300 159040 2792400 3218300 3859000 2170500 2091700 2117700 1728800 2022000 9 9 6 9 9 9 9 9 9 9 9 177220 308600 0 313480 156490 156870 174150 217460 264950 215240 284580 165000 287980 13754 317110 150450 170830 178530 217970 266270 210310 273920 2 2 0 2 2 2 2 2 2 2 2 729140000 616500000 112640000 16299 1389 14965 83375;83376;83377;83378;83379;83380;83381;83382 100849;100850;100851;100852;100853;100854;100855;100856;100857;100858;100859 100850 1866 11 RPHTPTPGIYMGRPTYGSSR Unmodified 2230.1066 0.10655412 1389 P62995;P62995-3 TRA2B Transformer-2 protein homolog beta yes no 0 0 0 2 By MS/MS 4.5 0.5 2 2 4 32.301 32.286 4;5 2.2514E-32 7549 20211116_3433_TMUAki_TMT10x_P_F5 195.36 167.95 861100 1378700 33806 1827200 1948100 2171000 1131400 729540 956090 826430 1089400 802020 1288200 118120 1837500 1849400 2158100 1184900 817390 985070 803140 1046800 3 3 3 3 3 3 3 3 3 3 3 861100 1378700 33806 1827200 1948100 2171000 1131400 729540 956090 826430 1089400 802020 1288200 118120 1837500 1849400 2158100 1184900 817390 985070 803140 1046800 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 473370000 473370000 0 16300 1389 14965 83383;83384;83385;83386 100860;100861;100862 100861 3 RPIAHLPCPGK Unmodified 1244.6812 0.68119582 1594 Q13112 CHAF1B Chromatin assembly factor 1 subunit B yes yes 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 32.673 32.564 4 0.033497 10027 20211116_3441_TMUAki_TMT10x_S_F3 48.44 35.432 1284700 1991800 8846.5 1875300 1917300 1894200 1299400 1271000 1232000 1179300 1556300 1196200 1858100 109490 1921600 1822500 1914500 1348300 1321000 1267800 1155500 1491300 2 2 1 2 2 2 2 2 2 2 2 810620 1324500 8846.5 1160900 1522200 1540800 874360 823340 820980 789930 1026000 754830 1235200 85416 1201600 1443800 1530200 919120 872320 844810 772860 983410 1 1 1 1 1 1 1 1 1 1 1 474100 667360 0 714400 395110 353370 425050 447690 411030 389340 530340 441320 622890 24074 720080 378690 384380 429150 448670 423000 382660 507900 1 1 0 1 1 1 1 1 1 1 1 76331000 39300000 37031000 16301 1594 14966 83387;83388;83389;83390 100863;100864 100864 2 RPIELSDYIHPVCLPDK Unmodified 2051.051 0.050996298 32 CON__P00735 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 62.049 62.635 4 6.674E-06 20471 20211116_3435_TMUAki_TMT10x_P_F7 97.081 81.489 + 11202000 18698000 141850 22982000 15258000 19962000 15428000 16178000 16973000 18509000 15817000 10431000 17464000 1094200 23098000 14642000 20437000 15688000 16710000 17158000 17981000 15294000 4 4 3 4 4 4 4 4 4 4 4 6035000 9686600 102120 12219000 9462300 14260000 9353700 8119200 8738700 9933100 7618200 5619900 9048100 643520 12317000 9076400 14263000 9474500 8619200 8877300 9626400 7383600 2 2 2 2 2 2 2 2 2 2 2 5166800 9011900 39730 10763000 5796000 5702600 6073900 8058900 8233800 8575700 8199100 4810900 8415600 450720 10781000 5565300 6174500 6213400 8090300 8280800 8354200 7910500 2 2 1 2 2 2 2 2 2 2 2 1412800000 757310000 655530000 16302 32 14967 83391;83392 100865;100866;100867;100868 100866 4 RPISADSAIMNPASK Oxidation (M) 1572.793 0.7929907 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 1 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 35.283 35.711 3 5.9493E-05 7633 20211116_3447_TMUAki_TMT10x_S_F8 88.561 73.022 364000 571760 3958.3 727510 760070 585400 438220 293700 312590 271350 437560 338920 534100 35552 729050 720690 598580 457440 312670 327940 265940 418230 5 5 3 5 5 5 5 5 5 5 5 289390 449960 3854.6 581720 693440 536800 368870 234690 258120 221370 354340 269450 420350 29381 583470 656720 542840 387700 253460 270860 216750 338840 4 4 2 4 4 4 4 4 4 4 4 74611 121810 103.65 145790 66636 48603 69352 59014 54471 49980 83227 69471 113750 6170.7 145580 63968 55742 69744 59206 57086 49185 79396 1 1 1 1 1 1 1 1 1 1 1 32231000 20789000 11442000 16303 1471 14968 83393;83394;83395 100869;100870;100871;100872;100873 100873 1983 5 RPISADSAIMNPASK Unmodified 1556.7981 0.79807608 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 40.632 40.866 3 3.3573E-10 11742 20211116_3435_TMUAki_TMT10x_P_F7 119.54 92.833 2452300 3809800 1197.9 4970900 1756700 1701500 2079700 1870900 1984600 1851300 3220300 2283100 3559300 163130 4940200 1690500 1938900 2089700 1893100 2067000 1808900 3068300 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2452300 3809800 1197.9 4970900 1756700 1701500 2079700 1870900 1984600 1851300 3220300 2283100 3559300 163130 4940200 1690500 1938900 2089700 1893100 2067000 1808900 3068300 3 3 1 3 3 3 3 3 3 3 3 138580000 0 138580000 16304 1471 14968 83396;83397;83398 100874;100875;100876;100877;100878 100874 5 RPIVEFSLEDR Unmodified 1359.7147 0.71466402 2983 Q9NW13;Q9NW13-2 RBM28 RNA-binding protein 28 yes no 0 0 0 1 By MS/MS By MS/MS 4.2 0.748 1 2 2 2 3 47.644 47.807 3 7.0504E-16 13459 20211116_3431_TMUAki_TMT10x_P_F4 201.38 131.71 8956000 14356000 27928 15615000 11770000 12407000 10623000 11622000 11890000 11176000 12800000 8338600 13401000 751990 15793000 11255000 12820000 10875000 11843000 12073000 10933000 12319000 5 5 2 5 5 5 5 5 5 5 5 2930500 5002700 27928 5594400 6015900 6744800 4233700 4216200 4305600 3725400 4542300 2728800 4670300 312200 5682600 5725200 6743400 4389900 4399600 4385400 3658600 4374400 2 2 2 2 2 2 2 2 2 2 2 6025500 9353500 0 10021000 5754200 5662600 6389700 7406100 7584600 7450100 8257400 5609800 8730300 439790 10111000 5529800 6076700 6485200 7443300 7687600 7274400 7944700 3 3 0 3 3 3 3 3 3 3 3 1651700000 857950000 793750000 16305 2983 14969 83399;83400;83401;83402;83403 100879;100880;100881;100882;100883;100884 100879 6 RPIVEFSLEDRR Unmodified 1515.8158 0.81577505 2983 Q9NW13;Q9NW13-2 RBM28 RNA-binding protein 28 yes no 0 0 0 2 By MS/MS 6 0 1 1 38.482 38.645 4 1.2279E-05 9241 20211116_3445_TMUAki_TMT10x_S_F6 103.97 87.343 118170 169370 1744.4 175790 111420 97136 109570 134540 134430 116770 138260 110040 158060 11328 177700 106890 104650 112010 134380 135810 114770 133260 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 118170 169370 1744.4 175790 111420 97136 109570 134540 134430 116770 138260 110040 158060 11328 177700 106890 104650 112010 134380 135810 114770 133260 1 1 1 1 1 1 1 1 1 1 1 8149600 0 8149600 16306 2983 14970 83404 100885 100885 1 RPKEEDPATGTGDPPR Unmodified 1721.8333 0.83327561 1036 P45974;P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 2 By matching By MS/MS 2.5 0.5 1 1 1 1 27.248 26.987 4 2.2454E-35 7913 20211116_3441_TMUAki_TMT10x_S_F3 207.39 167.16 32874 59419 0 61405 35094 27432 48933 31486 46157 34593 41093 30609 55451 0 61995 33998 30133 48825 31902 46898 33658 39798 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32874 59419 0 61405 35094 27432 48933 31486 46157 34593 41093 30609 55451 0 61995 33998 30133 48825 31902 46898 33658 39798 1 1 0 1 1 1 1 1 1 1 1 11278000 3372400 7905600 16307 1036 14971 83405;83406 100886 100886 1 RPKEEEWDPEYTPK Unmodified 1802.8475 0.84752869 3018 Q9NYF8;Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 yes no 0 0 0 2 By MS/MS 5 0.816 1 1 1 3 39.569 39.602 4 0.0017767 10534 20211116_3433_TMUAki_TMT10x_P_F5 73.415 55.714 3481800 5383100 41675 6571100 13618000 8987500 6549400 4298700 4597200 3791400 5702200 3242200 5027500 469470 6655800 12882000 8901500 6952500 4592100 4801500 3723700 5466500 2 2 2 2 2 2 2 2 2 2 2 3481800 5383100 41675 6571100 13618000 8987500 6549400 4298700 4597200 3791400 5702200 3242200 5027500 469470 6655800 12882000 8901500 6952500 4592100 4801500 3723700 5466500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1003700000 1003700000 0 16308 3018 14972 83407;83408;83409 100887;100888 100887 2 RPLDDGVGNQLGALVHQR Unmodified 1944.029 0.028955723 2494 Q96I24 FUBP3 Far upstream element-binding protein 3 yes yes 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 2 4 3 3 46.917 47.31 3;4 3.8079E-50 14266 20211116_3435_TMUAki_TMT10x_P_F7 221.34 186.84 15090000 26133000 172190 28866000 19073000 20353000 13498000 24763000 24291000 20401000 23161000 14051000 24395000 1304200 29128000 18153000 21358000 14317000 24824000 24199000 20104000 22378000 11 11 7 11 11 11 11 11 11 11 11 4320200 7279300 101720 8340300 9337300 12006000 6153800 7396600 7332100 6050900 6852700 4023100 6796400 501120 8488300 8877700 11902000 6445000 7712700 7390600 5965100 6625400 4 4 3 4 4 4 4 4 4 4 4 10770000 18854000 70472 20526000 9735700 8346200 7344000 17366000 16959000 14350000 16309000 10028000 17599000 803110 20640000 9275400 9456600 7872000 17111000 16809000 14139000 15752000 7 7 4 7 7 7 7 7 7 7 7 5983400000 3409200000 2574200000 16309 2494 14973 83410;83411;83412;83413;83414;83415 100889;100890;100891;100892;100893;100894;100895;100896;100897;100898;100899 100892 11 RPLEDGDQPDAK Unmodified 1339.6368 0.63680763 2408;2407 Q96AE4-2;Q96AE4 FUBP1 Far upstream element-binding protein 1 no no 0 0 0 1 By MS/MS 3 0 1 1 31.118 30.865 3 3.6573E-15 9394 20211116_3441_TMUAki_TMT10x_S_F3 154.23 102.97 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16310 2408;2407 14974 83416 100900 100900 1 RPLEDGDQPDAKK Unmodified 1467.7318 0.73177065 2408;2407 Q96AE4-2;Q96AE4 FUBP1 Far upstream element-binding protein 1 no no 0 0 0 2 By MS/MS 4.5 0.5 1 1 2 30.778 30.763 4 8.4712E-09 6680 20211116_3431_TMUAki_TMT10x_P_F4 121.92 109.56 449120 730820 15649 676780 635940 849320 522990 384050 410620 403380 581240 418290 681730 54435 696830 607870 844140 532920 414530 428710 393170 555420 1 1 1 1 1 1 1 1 1 1 1 449120 730820 15649 676780 635940 849320 522990 384050 410620 403380 581240 418290 681730 54435 696830 607870 844140 532920 414530 428710 393170 555420 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 52889000 52889000 0 16311 2408;2407 14975 83417;83418 100901 100901 1 RPLEMEQQQAYRPEMK 2 Oxidation (M) 2064.9721 0.97209405 2675 Q9BUJ2;Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2-3 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 0 0 2 2 By MS/MS 4.5 0.5 1 1 2 31.26 31.245 4 0.0002348 7152 20211116_3433_TMUAki_TMT10x_P_F5 79.332 64.404 374590 590030 12292 762440 1479100 1202800 561140 612490 886460 522100 656870 348870 551210 57981 772230 1395900 1184900 627250 649830 879440 513640 640770 2 2 2 2 2 2 2 2 2 2 2 374590 590030 12292 762440 1479100 1202800 561140 612490 886460 522100 656870 348870 551210 57981 772230 1395900 1184900 627250 649830 879440 513640 640770 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 190660000 190660000 0 16312 2675 14976 83419;83420 100902;100903 100903 2891;2892 2 RPLEMEQQQAYRPEMK Oxidation (M) 2048.9772 0.97717943 2675 Q9BUJ2;Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2-3 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 0 0 1 2 By MS/MS 5 0 1 1 33.838 33.783 4 1.8362E-05 8137 20211116_3433_TMUAki_TMT10x_P_F5 95.197 82.14 1593700 2958500 69279 3705800 6843800 4816400 2981000 2160000 2125300 1787700 2842100 1484500 2763400 270230 3744400 6469300 4778400 3199200 2319100 2225000 1761300 2719500 3 3 3 3 3 3 3 3 3 3 3 1593700 2958500 69279 3705800 6843800 4816400 2981000 2160000 2125300 1787700 2842100 1484500 2763400 270230 3744400 6469300 4778400 3199200 2319100 2225000 1761300 2719500 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 111160000 111160000 0 16313 2675 14976 83421 100904;100905;100906 100904 2891;2892 3 RPLFLAPDFDR Unmodified 1345.7143 0.71427009 3047 Q9P035 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes yes 0 0 0 1 By MS/MS By MS/MS 6.2 2.64 1 2 2 2 3 55.034 55.238 3 3.6601E-11 17878 20211116_3446_TMUAki_TMT10x_S_F7 165.58 139.65 16259000 26602000 210290 25171000 19572000 27620000 18768000 19985000 18816000 19230000 20653000 15140000 24817000 1559200 25816000 18757000 27815000 19081000 20683000 19205000 18812000 19866000 8 8 6 8 8 8 8 8 8 8 8 9259200 14912000 146420 14168000 12112000 19472000 11209000 11070000 10805000 10822000 11320000 8622300 13912000 944070 14586000 11600000 19321000 11404000 11672000 11028000 10579000 10904000 4 4 4 4 4 4 4 4 4 4 4 6999900 11689000 63874 11002000 7459200 8148100 7558800 8915000 8010400 8407900 9332800 6517800 10905000 615130 11230000 7156600 8494100 7676000 9010300 8176400 8232500 8962100 4 4 2 4 4 4 4 4 4 4 4 4044300000 2196200000 1848000000 16314 3047 14977 83422;83423;83424;83425;83426 100907;100908;100909;100910;100911;100912;100913;100914 100912 8 RPLHSAQAVDVASASNFR Unmodified 1924.9868 0.98675656 2806 Q9H4A4 RNPEP Aminopeptidase B yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 4 2 2 34.228 34.223 3;4 1.62E-58 9622 20211116_3439_TMUAki_TMT10x_S_F1 255.07 235.06 1390500 2207400 33341 3092100 2442900 2925100 1328400 2030200 2439000 2292600 2113900 1294900 2063000 161090 3089500 2316400 2970100 1440100 2117200 2421200 2228300 2049300 6 6 6 6 6 6 6 6 6 6 6 679880 1027300 11588 1418400 1935200 2397700 850340 972600 1062700 1127700 1024700 633120 960060 84748 1434100 1829000 2350200 925840 1065400 1070500 1095000 989630 3 3 3 3 3 3 3 3 3 3 3 710580 1180000 21753 1673700 507700 527340 478070 1057600 1376300 1164900 1089200 661790 1102900 76344 1655400 487380 619850 514280 1051700 1350700 1133300 1059600 3 3 3 3 3 3 3 3 3 3 3 164740000 96114000 68622000 16315 2806 14978 83427;83428;83429;83430 100915;100916;100917;100918;100919;100920 100920 6 RPLNSVVLQQGLADR Unmodified 1664.9322 0.93220179 3227 Q9Y276 BCS1L Mitochondrial chaperone BCS1 yes yes 0 0 0 1 By MS/MS 1 0 1 1 43.558 43.361 3 7.1387E-24 13352 20211116_3439_TMUAki_TMT10x_S_F1 188.44 163.58 563860 1005800 6975.2 1226900 458790 483760 436140 696020 838930 722720 865350 525060 939370 51777 1224900 439760 543430 456050 697750 836780 704750 833950 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 563860 1005800 6975.2 1226900 458790 483760 436140 696020 838930 722720 865350 525060 939370 51777 1224900 439760 543430 456050 697750 836780 704750 833950 1 1 1 1 1 1 1 1 1 1 1 91825000 0 91825000 16316 3227 14979 83431 100921 100921 1 RPLPPAAQER Unmodified 1133.6305 0.63054046 493 P04818;P04818-2;P04818-3 TYMS Thymidylate synthase yes no 0 0 0 1 By MS/MS 5 0 1 1 26.707 26.633 3 0.00047153 5253 20211116_3433_TMUAki_TMT10x_P_F5 98.898 63.265 204760 323560 1911.4 286040 229880 331970 219870 148640 161580 161520 276960 190650 301770 17041 295140 220150 331230 221740 160760 171020 157220 263600 2 2 1 2 2 2 2 2 2 2 2 204760 323560 1911.4 286040 229880 331970 219870 148640 161580 161520 276960 190650 301770 17041 295140 220150 331230 221740 160760 171020 157220 263600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5422500 5422500 0 16317 493 14980 83432 100922;100923 100922 2 RPLRPQVVTDDDGQAPEAK Unmodified 2091.0709 0.070880117 2878 Q9HDC9;Q9HDC9-2 APMAP Adipocyte plasma membrane-associated protein yes no 0 0 0 2 By MS/MS 4.5 0.5 1 1 2 33.227 33.213 4 2.9964E-17 7655 20211116_3431_TMUAki_TMT10x_P_F4 143.83 120.5 1045800 1441700 0 2427600 4775000 3227300 1604800 1703400 2135100 1169600 1780900 973530 1349000 106950 2418900 4496700 3204200 1810000 1792800 2136300 1164300 1728900 2 2 0 2 2 2 2 2 2 2 2 1045800 1441700 0 2427600 4775000 3227300 1604800 1703400 2135100 1169600 1780900 973530 1349000 106950 2418900 4496700 3204200 1810000 1792800 2136300 1164300 1728900 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 551830000 551830000 0 16318 2878 14981 83433;83434 100924;100925 100924 2 RPNFKPDIQEIPK Unmodified 1580.8675 0.86747627 2087 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 WAPAL Wings apart-like protein homolog yes no 0 0 0 2 By MS/MS By matching 8 0 2 1 1 45.374 45.413 4 0.00031931 12229 20211116_3436_TMUAki_TMT10x_P_F8 85.536 65.154 1384200 2115700 20033 2514800 3037700 3803000 1900100 2346000 2029400 1684500 2192400 1289000 1975700 156590 2556600 2885300 3762000 1990800 2439000 2064700 1672400 2109900 1 1 1 1 1 1 1 1 1 1 1 1384200 2115700 20033 2514800 3037700 3803000 1900100 2346000 2029400 1684500 2192400 1289000 1975700 156590 2556600 2885300 3762000 1990800 2439000 2064700 1672400 2109900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 706900000 559440000 147460000 16319 2087 14982 83435;83436 100926 100926 1 RPNKPLFTALVTQCQK Unmodified 1900.0353 0.035286654 2234 Q8NCW5;Q8NCW5-2 APOA1BP NAD(P)H-hydrate epimerase yes no 0 0 0 2 By MS/MS 6 0 1 1 48.949 49.106 4 5.4287E-07 13424 20211116_3445_TMUAki_TMT10x_S_F6 102.65 89.231 7574300 12824000 237440 14617000 6997300 6425000 6575000 9381800 7685400 8668700 10333000 7054200 11973000 841170 14663000 6713100 7117100 6725700 9368200 7863900 8495700 9885500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7574300 12824000 237440 14617000 6997300 6425000 6575000 9381800 7685400 8668700 10333000 7054200 11973000 841170 14663000 6713100 7117100 6725700 9368200 7863900 8495700 9885500 2 2 2 2 2 2 2 2 2 2 2 626400000 0 626400000 16320 2234 14983 83437 100927;100928 100927 2 RPNLETYYER Unmodified 1339.6521 0.65206377 2265 Q8TB36;Q8TB36-2 GDAP1 Ganglioside-induced differentiation-associated protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 34.386 34.438 3 1.5501E-06 8527 20211116_3433_TMUAki_TMT10x_P_F5 149.49 126.27 976690 1468200 0 1825900 1642400 1492500 1104300 1049700 1115700 953930 1301200 909300 1371300 78928 1832500 1560600 1531100 1148600 1086800 1141100 935610 1249400 2 2 0 2 2 2 2 2 2 2 2 580690 888850 0 1130500 1321100 1199400 773700 637040 677830 572830 770670 540610 830300 49725 1137300 1252400 1205000 810450 674150 697070 562100 740560 1 1 0 1 1 1 1 1 1 1 1 396000 579350 0 695430 321320 293070 330580 412710 437840 381110 530490 368700 541030 29203 695240 308160 326070 338160 412630 444020 373510 508880 1 1 0 1 1 1 1 1 1 1 1 123840000 95759000 28081000 16321 2265 14984 83438;83439;83440 100929;100930 100929 2 RPNLPLK Unmodified 836.52322 0.52322184 384 O94776;O94776-2 MTA2 Metastasis-associated protein MTA2 yes no 0 0 0 1 By MS/MS 2 0 1 1 35.069 34.844 3 0.0023758 9441 20211116_3429_TMUAki_TMT10x_P_F2 107.32 35.179 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16322 384 14985 83441 100931 100931 1 RPNPDILDHERK Unmodified 1488.7797 0.77972389 3216 Q9UQ35;Q9UQ35-2 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 0 0 0 2 By MS/MS 5 0 2 2 30.547 30.48 4;5 0.0044361 6912 20211116_3433_TMUAki_TMT10x_P_F5 63.602 48.63 1458200 2244200 20229 2043500 1945600 2235200 1533200 1107800 1210400 1202700 1636900 1357900 2093300 146570 2101700 1856400 2240000 1566700 1186100 1260700 1170700 1565900 3 3 3 3 3 3 3 3 3 3 3 1458200 2244200 20229 2043500 1945600 2235200 1533200 1107800 1210400 1202700 1636900 1357900 2093300 146570 2101700 1856400 2240000 1566700 1186100 1260700 1170700 1565900 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28061000 28061000 0 16323 3216 14986 83442;83443 100932;100933;100934 100933 3 RPPAAPENTPLVPSGVK Unmodified 1728.9523 0.95226853 1077 P48634;P48634-2;P48634-3;P48634-4 PRRC2A Protein PRRC2A yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 42.648 42.778 3 3.5848E-11 10575 20211116_3447_TMUAki_TMT10x_S_F8 135.23 110.27 1139000 1972800 11311 2374100 1758000 1745000 1223000 2153900 2118000 1719600 1923400 1060600 1842400 106990 2384300 1672400 1825700 1296200 2156300 2108600 1697400 1861400 3 3 1 3 3 3 3 3 3 3 3 352980 555660 0 700430 1098600 1119200 635200 714180 665460 510430 623820 328630 519030 35675 710590 1041500 1105200 669480 740470 674190 506910 603060 1 1 0 1 1 1 1 1 1 1 1 786050 1417200 11311 1673700 659320 625800 587790 1439700 1452500 1209200 1299600 731950 1323300 71311 1673700 630900 720440 626730 1415800 1434400 1190500 1258400 2 2 1 2 2 2 2 2 2 2 2 247850000 146380000 101470000 16324 1077 14987 83444;83445 100935;100936;100937 100936 3 RPPASDGLDLSQAAAR Unmodified 1623.8329 0.83288168 1842 Q16352 INA Alpha-internexin yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 36.554 36.555 3 6.2334E-31 8022 20211116_3444_TMUAki_TMT10x_S_F5 182.31 138.68 586560 991520 4114.7 1306800 1685900 1660700 829500 978180 1043700 799720 957340 546180 926380 67862 1316200 1595300 1654600 892810 1023700 1049400 788400 926180 1 1 1 1 1 1 1 1 1 1 1 586560 991520 4114.7 1306800 1685900 1660700 829500 978180 1043700 799720 957340 546180 926380 67862 1316200 1595300 1654600 892810 1023700 1049400 788400 926180 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 114700000 114700000 0 16325 1842 14988 83446;83447;83448 100938;100939 100939 2 RPPEAFGFEQATR Unmodified 1504.7423 0.74227576 998 P41229;P41229-4;P41229-3;P41229-2;P41229-5 KDM5C Lysine-specific demethylase 5C yes no 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 39.232 39.322 3 2.2373E-06 9439 20211116_3445_TMUAki_TMT10x_S_F6 103.16 87.197 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16326 998 14989 83449;83450 100940;100941 100941 2 RPPEDDFR Unmodified 1030.4832 0.48320752 2161 Q8IXT5 RBM12B RNA-binding protein 12B yes no 0 0 0 1 By MS/MS 2 0 1 1 29.202 28.968 3 0.070509 7137 20211116_3429_TMUAki_TMT10x_P_F2 43.492 16.978 198960 302280 2544.6 268160 301820 346700 236500 184290 183380 191420 252820 185270 281940 20307 277150 287910 344700 241670 195780 191350 186650 241740 1 1 1 1 1 1 1 1 1 1 1 198960 302280 2544.6 268160 301820 346700 236500 184290 183380 191420 252820 185270 281940 20307 277150 287910 344700 241670 195780 191350 186650 241740 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10695000 10695000 0 16327 2161 14990 83451 100942 100942 1 RPPEDFETPSGERPR Unmodified 1768.8493 0.84926002 2295 Q8WUA4;Q8WUA4-2 GTF3C2 General transcription factor 3C polypeptide 2 yes no 0 0 0 2 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 30.447 30.299 4 6.8544E-10 9165 20211116_3441_TMUAki_TMT10x_S_F3 136.99 111.55 533800 773190 1967.1 859080 898180 698630 595870 374440 447010 394100 673390 497000 721790 47013 867940 853470 714330 615620 397650 469300 384090 642580 2 2 1 2 2 2 2 2 2 2 2 409220 592340 0 625190 790860 608940 463970 270600 306500 292760 504400 380990 552840 35093 635230 749820 613740 482840 292870 325720 285010 480450 1 1 0 1 1 1 1 1 1 1 1 124580 180850 1967.1 233890 107330 89698 131900 103830 140510 101340 168990 116010 168950 11920 232710 103650 100590 132780 104780 143580 99078 162140 1 1 1 1 1 1 1 1 1 1 1 115160000 76213000 38949000 16328 2295 14991 83452;83453;83454 100943;100944 100944 2 RPPEEDFR Unmodified 1044.4989 0.49885759 2161 Q8IXT5 RBM12B RNA-binding protein 12B yes no 0 0 0 1 By MS/MS 2 0 1 1 29.405 29.171 3 0.023778 7245 20211116_3429_TMUAki_TMT10x_P_F2 60.518 31.045 250380 368920 670.08 376630 373180 428790 290040 242410 251400 233260 312170 233140 344270 23103 384460 355770 429420 297350 255600 259600 228190 299260 1 1 1 1 1 1 1 1 1 1 1 250380 368920 670.08 376630 373180 428790 290040 242410 251400 233260 312170 233140 344270 23103 384460 355770 429420 297350 255600 259600 228190 299260 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11851000 11851000 0 16329 2161 14992 83455 100945 100945 1 RPPENEAPPVPFLHAQR Unmodified 1954.0173 0.017328404 2395 Q969N2;Q969N2-2;Q969N2-4;Q969N2-5 PIGT GPI transamidase component PIG-T yes no 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 39.483 39.574 4 0.000492 9495 20211116_3434_TMUAki_TMT10x_P_F6 63.337 49.179 1948600 3129000 47795 3353700 2834700 2631700 2365500 2369500 2248500 2100100 2672500 1814700 2920500 215560 3394600 2708900 2719700 2420300 2414300 2307600 2062200 2564900 5 5 3 5 5 5 5 5 5 5 5 643470 1012900 30806 1124200 1535700 1523800 1015700 1017500 919110 796700 966820 599360 945530 94554 1145000 1461300 1516300 1054400 1053400 940960 787200 931180 1 1 1 1 1 1 1 1 1 1 1 1305100 2116100 16990 2229500 1299000 1107900 1349800 1352100 1329400 1303400 1705700 1215300 1975000 121000 2249700 1247600 1203400 1365900 1360900 1366700 1275000 1633700 4 4 2 4 4 4 4 4 4 4 4 213200000 200420000 12778000 16330 2395 14993 83456;83457 100946;100947;100948;100949;100950 100946 5 RPPESPPIVEEWNSR Unmodified 1791.8904 0.89039656 2665 Q9BTL3 FAM103A1 RNMT-activating mini protein yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 44.888 45.099 3 9.0089E-11 12778 20211116_3433_TMUAki_TMT10x_P_F5 124.3 95.587 1556100 2577500 6939.6 3014600 1399800 1384300 1465100 1630700 1515200 1400500 2037500 1448900 2406700 133290 3020100 1344200 1516300 1484300 1638600 1557800 1377300 1949300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1556100 2577500 6939.6 3014600 1399800 1384300 1465100 1630700 1515200 1400500 2037500 1448900 2406700 133290 3020100 1344200 1516300 1484300 1638600 1557800 1377300 1949300 1 1 1 1 1 1 1 1 1 1 1 218280000 0 218280000 16331 2665 14994 83458;83459;83460 100951;100952;100953 100951 3 RPPEVFEQEIR Unmodified 1398.7256 0.72556306 2748 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O yes yes 0 0 0 1 By MS/MS 3.5 0.5 1 1 2 40.21 40.158 3 7.2924E-06 10731 20211116_3442_TMUAki_TMT10x_S_F4 115.57 71.064 5552600 10203000 0 12064000 4905800 3622000 4555000 5900600 6912600 5996600 7808100 5169600 9527700 84660 12050000 4691700 4261800 4711700 5887200 6961000 5852700 7504500 3 3 0 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5552600 10203000 0 12064000 4905800 3622000 4555000 5900600 6912600 5996600 7808100 5169600 9527700 84660 12050000 4691700 4261800 4711700 5887200 6961000 5852700 7504500 3 3 0 3 3 3 3 3 3 3 3 214120000 0 214120000 16332 2748 14995 83461;83462 100954;100955;100956 100956 3 RPPGEPLQGFSK Unmodified 1311.6935 0.69353465 7 A1L020 MEX3A RNA-binding protein MEX3A yes yes 0 0 0 1 By MS/MS 8 0 1 1 39.525 39.868 3 1.1717E-07 9369 20211116_3447_TMUAki_TMT10x_S_F8 135.81 112.94 579750 924930 3449.6 1055900 526390 439030 474270 818840 917090 674540 888440 539830 863550 50533 1058700 503620 493840 497510 809050 912580 664730 857930 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 579750 924930 3449.6 1055900 526390 439030 474270 818840 917090 674540 888440 539830 863550 50533 1058700 503620 493840 497510 809050 912580 664730 857930 1 1 1 1 1 1 1 1 1 1 1 42739000 0 42739000 16333 7 14996 83463 100957 100957 1 RPPHPLPPR Unmodified 1065.6196 0.61958185 641 P12270 TPR Nucleoprotein TPR yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 26.563 26.325 3 0.0073814 6306 20211116_3429_TMUAki_TMT10x_P_F2 64.711 38.269 368370 528190 15312 471200 390370 571770 381550 290850 296200 302630 415510 343100 492640 45119 486230 375010 569970 384840 310250 309300 295080 397130 2 2 2 2 2 2 2 2 2 2 2 368370 528190 15312 471200 390370 571770 381550 290850 296200 302630 415510 343100 492640 45119 486230 375010 569970 384840 310250 309300 295080 397130 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2414800 2414800 0 16334 641 14997 83464;83465 100958;100959;100960 100959 3 RPPPEHFR Unmodified 1034.541 0.54099717 2161 Q8IXT5 RBM12B RNA-binding protein 12B yes no 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 23.434 23.653 3 0.0048447 3765 20211116_3445_TMUAki_TMT10x_S_F6 86.205 71.539 759190 1294500 15601 1133200 908290 926920 896780 953760 869230 820120 1019600 706990 1207300 79570 1164300 871570 957610 909390 964370 890830 806470 978890 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 759190 1294500 15601 1133200 908290 926920 896780 953760 869230 820120 1019600 706990 1207300 79570 1164300 871570 957610 909390 964370 890830 806470 978890 1 1 1 1 1 1 1 1 1 1 1 36032000 0 36032000 16335 2161 14998 83466;83467 100961;100962 100962 2 RPPPQPPTPDYTESDILR Unmodified 2078.0433 0.043268383 2500 Q96IW2 SHD SH2 domain-containing adapter protein D yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 46.17 46.344 3 1.8008E-31 13228 20211116_3442_TMUAki_TMT10x_S_F4 193.19 161.36 3023400 5382800 90.606 5832700 2422200 3321100 2220400 5933400 6004100 4747100 4973900 2814800 5024400 213470 5881000 2315600 3596900 2379900 5865300 5906000 4685100 4830000 4 4 1 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3023400 5382800 90.606 5832700 2422200 3321100 2220400 5933400 6004100 4747100 4973900 2814800 5024400 213470 5881000 2315600 3596900 2379900 5865300 5906000 4685100 4830000 4 4 1 4 4 4 4 4 4 4 4 469130000 0 469130000 16336 2500 14999 83468;83469;83470 100963;100964;100965;100966;100967 100964 5 RPPQPPGPPR Unmodified 1097.6094 0.60941109 2018 Q6UB35;Q6UB35-2 MTHFD1L Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes no 0 0 0 1 By MS/MS 1 0 1 1 27.68 27.68 3 0.064011 5093 20211116_3428_TMUAki_TMT10x_P_F1 46.819 13.629 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16337 2018 15000 83471 100968 100968 1 RPPSAFFLFCSEHRPK Unmodified 1974.9887 0.98867081 817 P26583 HMGB2 High mobility group protein B2 yes yes 0 0 0 2 By MS/MS By MS/MS 5.47 1.41 1 3 4 4 1 2 8 7 46.124 46.262 4;5 3.2433E-35 13005 20211116_3433_TMUAki_TMT10x_P_F5 202.35 174.7 33977000 54600000 353690 64764000 47113000 67248000 33900000 36344000 28254000 37620000 38904000 31637000 50986000 3231600 65389000 44857000 67660000 34903000 38550000 29369000 36689000 37199000 17 17 11 17 17 17 17 17 17 17 17 21684000 33277000 223220 40660000 33549000 56633000 25187000 23037000 17196000 23211000 23958000 20191000 31079000 2142500 41197000 31969000 55954000 25738000 25123000 18084000 22662000 22902000 10 10 8 10 10 10 10 10 10 10 10 12293000 21323000 130470 24104000 13565000 10614000 8713700 13307000 11058000 14408000 14946000 11446000 19907000 1089200 24192000 12888000 11706000 9164900 13426000 11285000 14027000 14297000 7 7 3 7 7 7 7 7 7 7 7 20630000000 13037000000 7593200000 16338 817 15001 83472;83473;83474;83475;83476;83477;83478;83479;83480;83481;83482;83483;83484;83485;83486 100969;100970;100971;100972;100973;100974;100975;100976;100977;100978;100979;100980;100981;100982;100983;100984;100985 100974 17 RPPSAFFLFCSEYRPK Unmodified 2000.9931 0.99308749 574 P09429 HMGB1 High mobility group protein B1 yes yes 0 0 0 2 By MS/MS By MS/MS 6.24 1.09 2 5 8 22 36 3 31 45 53.397 53.471 2;3;4;5 2.6022E-78 17201 20211116_3434_TMUAki_TMT10x_P_F6 316.65 286.89 330890000 542660000 5859700 533200000 408190000 439250000 370530000 348230000 241120000 336020000 385470000 308130000 506320000 32855000 543210000 390730000 451220000 373810000 358290000 256080000 328670000 367380000 91 91 48 91 91 91 91 91 91 91 91 137270000 215480000 1761200 213690000 156760000 275580000 167270000 140740000 99981000 139620000 150290000 127820000 201060000 12933000 219050000 150660000 273890000 167040000 149860000 106440000 136400000 143420000 41 41 18 41 41 41 41 41 41 41 41 193620000 327180000 4098500 319510000 251430000 163670000 203260000 207500000 141140000 196400000 235180000 180300000 305270000 19922000 324160000 240070000 177330000 206770000 208420000 149640000 192270000 223960000 50 50 30 50 50 50 50 50 50 50 50 193460000000 96217000000 97243000000 16339 574 15002 83487;83488;83489;83490;83491;83492;83493;83494;83495;83496;83497;83498;83499;83500;83501;83502;83503;83504;83505;83506;83507;83508;83509;83510;83511;83512;83513;83514;83515;83516;83517;83518;83519;83520;83521;83522;83523;83524;83525;83526;83527;83528;83529;83530;83531;83532;83533;83534;83535;83536;83537;83538;83539;83540;83541;83542;83543;83544;83545;83546;83547;83548;83549;83550;83551;83552;83553;83554;83555;83556;83557;83558;83559;83560;83561;83562 100986;100987;100988;100989;100990;100991;100992;100993;100994;100995;100996;100997;100998;100999;101000;101001;101002;101003;101004;101005;101006;101007;101008;101009;101010;101011;101012;101013;101014;101015;101016;101017;101018;101019;101020;101021;101022;101023;101024;101025;101026;101027;101028;101029;101030;101031;101032;101033;101034;101035;101036;101037;101038;101039;101040;101041;101042;101043;101044;101045;101046;101047;101048;101049;101050;101051;101052;101053;101054;101055;101056;101057;101058;101059;101060;101061;101062;101063;101064;101065;101066;101067;101068;101069;101070;101071;101072;101073;101074;101075;101076 101001 91 RPPSGFFLFCSEFRPK Unmodified 1970.9825 0.9825228 182 O15347 HMGB3 High mobility group protein B3 yes yes 0 0 0 2 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 62.071 62.342 4 8.1461E-29 18978 20211116_3445_TMUAki_TMT10x_S_F6 188.04 165.82 69272000 120630000 5548800 117790000 95212000 103240000 88813000 77781000 61515000 54992000 68606000 64540000 112550000 11252000 120150000 91467000 105500000 89577000 79685000 64027000 54647000 65963000 8 8 7 8 8 8 8 8 8 8 8 32425000 53489000 2226200 52584000 41696000 65671000 40814000 33887000 25341000 26771000 31729000 30207000 49908000 4867000 53904000 40091000 65380000 40966000 35845000 26684000 26439000 30410000 4 4 3 4 4 4 4 4 4 4 4 36847000 67141000 3322600 65208000 53516000 37565000 48000000 43895000 36174000 28221000 36877000 34333000 62642000 6384900 66246000 51376000 40116000 48610000 43840000 37343000 28208000 35553000 4 4 4 4 4 4 4 4 4 4 4 13538000000 7133600000 6404500000 16340 182 15003 83563;83564;83565;83566;83567 101077;101078;101079;101080;101081;101082;101083;101084 101082 8 RPPVPPPPR Unmodified 1011.5978 0.59778377 403 O95072;O95072-2 REC8 Meiotic recombination protein REC8 homolog yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 28.568 28.608 3 0.0063002 7328 20211116_3439_TMUAki_TMT10x_S_F1 68.016 47.316 94355 126910 0 153230 101590 83085 95169 85835 87534 77035 104360 87829 118520 4818.9 153410 97047 89030 96633 86869 89983 75599 100160 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 94355 126910 0 153230 101590 83085 95169 85835 87534 77035 104360 87829 118520 4818.9 153410 97047 89030 96633 86869 89983 75599 100160 1 1 0 1 1 1 1 1 1 1 1 3716000 1368800 2347300 16341 403 15004 83568;83569;83570 101085;101086 101086 2 RPQDTQYYSPFSSFPR Unmodified 1974.9224 0.92242497 44 CON__P17697 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 53.323 53.107 3 1.971E-10 15587 20211116_3440_TMUAki_TMT10x_S_F2 125.52 111.62 + 5837400 10054000 0 11393000 7531200 13511000 6885200 8273400 8526700 8600200 8094800 5434600 9386900 429590 11560000 7199900 13516000 7068600 8686000 8587300 8386000 7822100 2 2 0 2 2 2 2 2 2 2 2 3777600 6328200 0 7483000 5485400 11508000 5191900 4865600 5448700 5272000 4918900 3516700 5909200 259930 7612500 5247300 11326000 5289600 5294400 5513100 5132200 4761400 1 1 0 1 1 1 1 1 1 1 1 2059800 3726200 0 3909900 2045800 2002800 1693300 3407900 3078000 3328200 3175900 1917900 3477600 169660 3947200 1952700 2189500 1778900 3391600 3074200 3253700 3060700 1 1 0 1 1 1 1 1 1 1 1 589390000 305810000 283580000 16342 44 15005 83571;83572 101087;101088 101088 2 RPQPYPYPSK Unmodified 1231.635 0.63495714 2799 Q9H3N1 TMX1 Thioredoxin-related transmembrane protein 1 yes yes 0 0 0 1 By MS/MS 1 0 1 1 33.239 33.239 3 0.0288 7292 20211116_3428_TMUAki_TMT10x_P_F1 55.401 40.369 315220 501960 0 597370 894390 711290 405870 389480 491440 347560 494420 293460 468740 29106 604380 844970 710360 439880 410980 496320 341170 476850 1 1 0 1 1 1 1 1 1 1 1 315220 501960 0 597370 894390 711290 405870 389480 491440 347560 494420 293460 468740 29106 604380 844970 710360 439880 410980 496320 341170 476850 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7534300 7534300 0 16343 2799 15006 83573 101089 101089 1 RPQQPNPPSAPLVPGLLDQSNPLSTPMPK Oxidation (M) 3091.6125 0.61245414 2295 Q8WUA4;Q8WUA4-2 GTF3C2 General transcription factor 3C polypeptide 2 yes no 0 0 1 1 By MS/MS 2 0 1 1 65.912 65.685 4 5.6164E-06 20697 20211116_3440_TMUAki_TMT10x_S_F2 63.893 56.271 1269300 2265900 0 1802300 1670400 1332800 1435900 1743700 1709300 1618300 1657300 1181700 2112600 97020 1864400 1594900 1395900 1477200 1748400 1725100 1585600 1600300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1269300 2265900 0 1802300 1670400 1332800 1435900 1743700 1709300 1618300 1657300 1181700 2112600 97020 1864400 1594900 1395900 1477200 1748400 1725100 1585600 1600300 1 1 0 1 1 1 1 1 1 1 1 424600000 0 424600000 16344 2295 15007 83574 101090 101090 2660 1 RPQTDQAVEFFIR Unmodified 1605.8263 0.82633974 2166 Q8IYB5;Q8IYB5-3;Q8IYB5-2 SMAP1 Stromal membrane-associated protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 52.757 53.111 3 2.0206E-25 17081 20211116_3446_TMUAki_TMT10x_S_F7 225.36 203.02 15535000 26064000 300550 26765000 21312000 26865000 18182000 20502000 20181000 18367000 21396000 14467000 24323000 1649000 27256000 20375000 27219000 18669000 21102000 20486000 18026000 20602000 5 5 5 5 5 5 5 5 5 5 5 9286200 15729000 112320 16635000 15199000 21022000 12454000 12993000 11984000 11730000 13259000 8647200 14680000 957390 16972000 14512000 20965000 12762000 13577000 12258000 11508000 12751000 3 3 3 3 3 3 3 3 3 3 3 6248800 10335000 188230 10130000 6113100 5843200 5727900 7509600 8196300 6637200 8137000 5819700 9643000 691590 10284000 5863200 6254500 5906600 7525000 8228200 6518200 7851300 2 2 2 2 2 2 2 2 2 2 2 2647000000 1387900000 1259100000 16345 2166 15008 83575;83576;83577;83578 101091;101092;101093;101094;101095 101095 5 RPQYSNPPVQGEVMEGADNQGAGEQGR Oxidation (M) 2886.2951 0.29509576 1410 P67809 YBX1 Nuclease-sensitive element-binding protein 1 yes yes 0 0 1 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 32.896 32.79 4 4.3209E-35 7549 20211116_3431_TMUAki_TMT10x_P_F4 179.76 173.26 104050 146290 2124.1 204910 232810 189000 125270 151460 190070 120630 186240 96901 136730 9582.1 204660 220660 192680 134700 154960 190400 119090 179770 2 2 1 2 2 2 2 2 2 2 2 67989 92312 2124.1 127980 208340 166580 102210 96496 114130 78617 120620 63321 86270 9582.1 128620 197230 165750 109590 101110 115820 77518 116160 1 1 1 1 1 1 1 1 1 1 1 36065 53982 0 76924 24470 22416 23060 54962 75944 42016 65616 33580 50457 0 76040 23428 26929 25101 53852 74580 41568 63617 1 1 0 1 1 1 1 1 1 1 1 106800000 89059000 17744000 16346 1410 15009 83579;83580 101096;101097 101096 1895 2 RPQYSNPPVQGEVMEGADNQGAGEQGRPVR Oxidation (M) 3238.5174 0.51738456 1410 P67809 YBX1 Nuclease-sensitive element-binding protein 1 yes yes 0 0 1 2 By MS/MS By MS/MS 3.64 1.17 1 1 4 4 4 8 6 30.255 30.195 3;4;5 6.078E-69 7116 20211116_3431_TMUAki_TMT10x_P_F4 220.41 187.45 4412700 6869800 22852 10136000 7815200 7733500 4627300 9123600 11349000 6611600 7792700 4108700 6422400 224160 10074000 7413900 8057900 5068400 9130900 11125000 6560700 7627400 21 21 6 21 20 21 21 21 21 21 21 1728400 2837600 17128 4134400 6791200 6225800 3488800 3048200 4298500 2145300 3312200 1609300 2652700 97031 4157500 6429000 6142000 3736500 3232600 4302600 2132400 3225700 13 13 4 13 13 13 13 13 13 13 13 2684400 4032100 5724.2 6001800 1024000 1507700 1138500 6075400 7050300 4466300 4480500 2499400 3769800 127130 5916500 984930 1915800 1331800 5898400 6822600 4428300 4401700 8 8 2 8 7 8 8 8 8 8 8 30071000000 24196000000 5875800000 16347 1410 15010 83581;83582;83583;83584;83585;83586;83587;83588;83589;83590;83591;83592;83593;83594 101098;101099;101100;101101;101102;101103;101104;101105;101106;101107;101108;101109;101110;101111;101112;101113;101114;101115;101116;101117 101100 1895 20 RPQYSNPPVQGEVMEGADNQGAGEQGRPVR Unmodified 3222.5225 0.52246994 1410 P67809 YBX1 Nuclease-sensitive element-binding protein 1 yes yes 0 0 0 2 By MS/MS By MS/MS 4.08 0.862 1 1 6 4 7 5 30.556 30.567 3;4;5 7.5871E-187 8479 20211116_3433_TMUAki_TMT10x_P_F5 386.59 353.04 5963800 10413000 75025 14446000 6645700 5605700 5070900 6139400 5257500 5389100 7764400 5553400 9731900 364500 14321000 6336900 6267800 5231300 6192600 5429400 5294200 7412400 15 16 7 16 15 15 14 15 16 16 16 1782300 2746300 37021 3502200 4344000 3553900 2566600 1433800 1536400 1430600 2165300 1659700 2565400 213060 3520200 4122500 3569600 2664400 1564600 1630500 1397300 2069300 7 7 5 7 7 7 7 7 7 7 7 4181500 7667100 38005 10944000 2301700 2051900 2504400 4705700 3721100 3958400 5599100 3893700 7166500 151440 10800000 2214400 2698200 2566800 4628000 3798900 3896800 5343100 8 9 2 9 8 8 7 8 9 9 9 17234000000 12700000000 4534500000 16348 1410 15010 83595;83596;83597;83598;83599;83600;83601;83602;83603;83604;83605;83606 101118;101119;101120;101121;101122;101123;101124;101125;101126;101127;101128;101129;101130;101131;101132;101133 101122 16 RPSENLGQVLFGER Unmodified 1600.8322 0.8321534 2606 Q99805 TM9SF2 Transmembrane 9 superfamily member 2 yes yes 0 0 0 1 By MS/MS By MS/MS 6.8 0.748 2 2 1 2 3 51.667 51.928 3 8.4461E-38 16033 20211116_3435_TMUAki_TMT10x_P_F7 253.06 223.26 15423000 26532000 245560 26580000 21001000 25259000 17405000 26077000 25360000 22541000 23682000 14361000 24757000 1486100 27093000 20054000 25832000 18089000 26367000 25392000 22160000 22897000 6 6 3 6 6 6 6 6 6 6 6 5144200 8784800 23862 8645900 10897000 14341000 7802800 8581100 8552400 7998100 7761300 4789500 8196600 470770 8915300 10368000 14129000 8099700 8997900 8639700 7835400 7511500 2 2 1 2 2 2 2 2 2 2 2 10278000 17747000 221700 17934000 10104000 10918000 9602000 17496000 16808000 14543000 15921000 9571600 16561000 1015300 18178000 9685900 11703000 9989000 17369000 16752000 14325000 15386000 4 4 2 4 4 4 4 4 4 4 4 2646000000 1420600000 1225400000 16349 2606 15011 83607;83608;83609;83610;83611 101134;101135;101136;101137;101138;101139 101135 6 RPSPDEPMTNLELK Oxidation (M) 1641.8032 0.80322103 3117 Q9UHD1;Q9UHD1-2 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 yes no 0 0 1 1 By MS/MS By MS/MS 4.38 0.857 1 4 2 1 2 6 38.776 38.818 3 1.3834E-06 9870 20211116_3431_TMUAki_TMT10x_P_F4 113.4 89.646 4687100 7627700 53911 10142000 11021000 9876400 5558600 6706600 8826700 5517500 7373600 4364300 7126900 493560 10165000 10431000 10007000 6025100 6943200 8785100 5437700 7158000 7 7 4 7 7 7 7 7 7 7 7 3065800 4991900 22441 6298200 9947400 8720500 4269700 4523600 5894000 3659400 4794500 2854400 4662800 338530 6369100 9394500 8640200 4678100 4785200 5886000 3609600 4659100 3 3 1 3 3 3 3 3 3 3 3 1621400 2635900 31470 3843500 1073600 1155800 1288900 2183000 2932700 1858100 2579100 1509900 2464100 155030 3795500 1036600 1366400 1347000 2158000 2899100 1828100 2498900 4 4 3 4 4 4 4 4 4 4 4 775490000 612340000 163160000 16350 3117 15012 83612;83613;83614;83615;83616;83617;83618;83619 101140;101141;101142;101143;101144;101145;101146;101147;101148 101140 3140 9 RPSPDEPMTNLELK Unmodified 1625.8083 0.80830641 3117 Q9UHD1;Q9UHD1-2 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 45.949 46.104 3 8.7827E-19 11970 20211116_3444_TMUAki_TMT10x_S_F5 161.49 129.85 31729000 47056000 556490 66450000 51546000 48056000 34150000 33123000 36598000 28642000 41331000 29547000 43981000 3426800 66145000 49021000 49755000 35625000 34297000 37293000 28158000 39724000 9 9 9 9 9 9 9 9 9 9 9 18586000 27114000 256630 37564000 44140000 39301000 26444000 18417000 20012000 16014000 23303000 17308000 25339000 2138000 37609000 41894000 39461000 27550000 19707000 20757000 15740000 22378000 4 4 4 4 4 4 4 4 4 4 4 13143000 19943000 299870 28886000 7406400 8754900 7705400 14706000 16586000 12627000 18028000 12240000 18642000 1288800 28536000 7127300 10294000 8075200 14590000 16536000 12418000 17346000 5 5 5 5 5 5 5 5 5 5 5 1308300000 916420000 391870000 16351 3117 15012 83620;83621;83622;83623 101149;101150;101151;101152;101153;101154;101155;101156;101157 101155 9 RPSSLQSLFGLPEAAGAR Unmodified 1855.9904 0.99044495 979 P39880;P39880-6;P39880-4;P39880-5;P39880-2;P39880-3 CUX1 Homeobox protein cut-like 1 yes no 0 0 0 1 By MS/MS 4 0 1 1 61.702 61.565 3 0.0059716 19606 20211116_3442_TMUAki_TMT10x_S_F4 56.304 40.278 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16352 979 15013 83624 101158 101158 1 RPSTFGIPR Unmodified 1029.572 0.57196295 1428 P78347;P78347-2;P78347-4;P78347-3 GTF2I General transcription factor II-I yes no 0 0 0 1 By MS/MS By MS/MS 2.2 1.17 2 1 1 1 3 2 33.388 33.303 3 0.00085016 10295 20211116_3441_TMUAki_TMT10x_S_F3 97.284 61.34 2893000 4434600 9006.7 4685400 4689700 4708200 3254500 3026800 3511700 2984200 3802600 2693700 4138900 269280 4762500 4460900 4757200 3384200 3161000 3571600 2916300 3659200 5 5 4 5 5 5 5 5 5 5 5 2098500 3184000 6937.2 3345000 3890700 3942300 2395600 2092600 2443700 2119800 2673500 1953900 2971600 201430 3410000 3693100 3937800 2509600 2221800 2492100 2069100 2571900 3 3 2 3 3 3 3 3 3 3 3 794460 1250600 2069.4 1340400 799000 765900 858950 934190 1068000 864460 1129100 739740 1167300 67859 1352500 767750 819470 874600 939240 1079500 847150 1087300 2 2 2 2 2 2 2 2 2 2 2 453410000 313030000 140380000 16353 1428 15014 83625;83626;83627;83628;83629 101159;101160;101161;101162;101163 101163 5 RPSTSQTVSTPAPVPVIESTEAIEAK Unmodified 2694.4076 0.40758955 641 P12270;P12270-2 TPR Nucleoprotein TPR yes no 0 0 0 1 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 56.719 56.834 4 5.0556E-12 16650 20211116_3445_TMUAki_TMT10x_S_F6 103.63 89.172 11424000 18398000 0 22334000 17925000 22062000 13577000 15490000 14314000 13944000 16297000 10635000 17182000 840920 22502000 17066000 22345000 14022000 16034000 14601000 13682000 15659000 5 5 0 5 5 5 5 5 5 5 5 7913000 12325000 0 15250000 14931000 19003000 10881000 10727000 10480000 9926600 11503000 7366600 11512000 599180 15407000 14205000 18941000 11236000 11301000 10715000 9727800 11065000 3 3 0 3 3 3 3 3 3 3 3 3510500 6072700 0 7084000 2994000 3059600 2696000 4762200 3834700 4017400 4794000 3268300 5670300 241740 7095200 2860600 3403400 2785500 4733600 3885400 3954300 4594900 2 2 0 2 2 2 2 2 2 2 2 2509700000 1661200000 848530000 16354 641 15015 83630;83631;83632 101164;101165;101166;101167;101168 101168 5 RPSTYGIPR Unmodified 1045.5669 0.56687757 1428 P78347;P78347-2;P78347-4;P78347-3 GTF2I General transcription factor II-I yes no 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 30.351 30.104 3 0.00010691 6010 20211116_3428_TMUAki_TMT10x_P_F1 94.692 56.965 813020 1300000 7603.9 1193200 1207400 1164600 1037100 835630 950040 802630 1043000 757060 1212600 80016 1224400 1153900 1180800 1058200 865230 973610 785250 1003200 3 3 3 3 3 3 3 3 3 3 3 443870 677480 1043.3 615730 814850 787460 578850 448460 508070 423560 566280 413290 631930 42968 635070 775440 784000 597300 472330 522040 414700 544470 1 1 1 1 1 1 1 1 1 1 1 369150 622490 6560.7 577470 392600 377110 458260 387170 441970 379070 476690 343770 580680 37048 589300 378490 396760 460900 392900 451570 370550 458770 2 2 2 2 2 2 2 2 2 2 2 75363000 53837000 21525000 16355 1428 15016 83633;83634;83635;83636 101169;101170;101171;101172;101173 101169 5 RPTDYFAEMAK Oxidation (M) 1343.618 0.61798644 2610 Q99848 EBNA1BP2 Probable rRNA-processing protein EBP2 yes yes 0 0 1 1 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 39.712 39.813 3 0.0057594 9378 20211116_3434_TMUAki_TMT10x_P_F6 62.088 32.028 3418200 5252800 16127 6355500 5951100 5545700 3790500 4387100 4863200 3830500 4951700 3182800 4905600 331850 6393600 5652700 5673500 3991000 4502300 4903600 3764000 4774000 5 5 2 5 5 5 5 5 5 5 5 1820000 2750500 14702 3340600 4392100 4286100 2359700 2201700 2500500 1935300 2504400 1694700 2568700 199730 3380400 4161000 4261200 2504100 2335700 2537800 1901000 2415800 2 2 1 2 2 2 2 2 2 2 2 1598100 2502300 1424.7 3014800 1559100 1259600 1430800 2185500 2362700 1895200 2447300 1488000 2336900 132120 3013200 1491700 1412300 1486900 2166600 2365900 1862900 2358200 3 3 1 3 3 3 3 3 3 3 3 286640000 131210000 155440000 16356 2610 15017 83637;83638;83639 101174;101175;101176;101177;101178 101174 2858 5 RPTEICADPQFIIGGATR Unmodified 2001.0102 0.010194116 707 P17655 CAPN2 Calpain-2 catalytic subunit yes yes 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 52.796 53.227 3 2.1371E-08 16601 20211116_3435_TMUAki_TMT10x_P_F7 115.57 98.317 8558900 14389000 44817 14777000 12593000 15191000 9887000 17430000 14810000 13036000 13942000 7969400 13428000 792420 15053000 12008000 15501000 10323000 17477000 14820000 12913000 13476000 4 4 2 4 4 4 4 4 4 4 4 3718200 6045200 44817 6098000 7799300 10438000 5617200 8293800 6482300 5946200 6036400 3462400 5641000 407190 6282100 7426200 10317000 5838700 8470500 6540900 5904100 5836900 2 2 2 2 2 2 2 2 2 2 2 4840600 8344000 0 8678600 4793700 4753900 4269700 9136200 8327300 7090100 7905300 4507000 7787100 385230 8771300 4582300 5183500 4484000 9006700 8279000 7008900 7639000 2 2 0 2 2 2 2 2 2 2 2 1901300000 1169300000 731990000 16357 707 15018 83640;83641;83642 101179;101180;101181;101182 101179 4 RPTELLSNPQFIVDGATR Unmodified 2013.0643 0.064338176 538 P07384 CAPN1 Calpain-1 catalytic subunit yes yes 0 0 0 1 By MS/MS 7.5 0.5 1 1 2 58.594 58.772 3 3.7838E-06 17633 20211116_3436_TMUAki_TMT10x_P_F8 96.391 84.7 2988500 4504600 33424 4130400 3338100 5637500 3601800 4040000 3418500 3428300 3861400 2782900 4201900 283820 4262600 3209400 5614200 3634000 4169900 3501500 3373500 3711200 1 1 1 1 1 1 1 1 1 1 1 2988500 4504600 33424 4130400 3338100 5637500 3601800 4040000 3418500 3428300 3861400 2782900 4201900 283820 4262600 3209400 5614200 3634000 4169900 3501500 3373500 3711200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 776290000 776290000 0 16358 538 15019 83643;83644 101183;101184 101184 2 RPTPNDDTLDEGVGLVHSNIATEHIPSPAK Unmodified 3179.5847 0.58471907 1483 Q01581 HMGCS1 Hydroxymethylglutaryl-CoA synthase, cytoplasmic yes yes 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 53.063 53.213 5 2.3531E-45 15156 20211116_3445_TMUAki_TMT10x_S_F6 182.44 154.04 22617000 41569000 317000 39695000 28567000 35735000 24040000 31962000 33885000 31734000 32396000 21060000 38782000 2113400 40568000 27288000 36564000 24926000 32681000 33988000 31003000 31298000 9 9 6 9 9 9 9 9 9 9 9 12203000 21027000 217310 20388000 17375000 26075000 15684000 16545000 17991000 16387000 16419000 11364000 19618000 1278400 20929000 16630000 25998000 16069000 17298000 18146000 16011000 15887000 5 5 4 5 5 5 5 5 5 5 5 10414000 20543000 99691 19307000 11192000 9660500 8356000 15417000 15894000 15347000 15977000 9696000 19164000 834940 19639000 10658000 10566000 8857500 15383000 15842000 14992000 15410000 4 4 2 4 4 4 4 4 4 4 4 4528800000 2624600000 1904200000 16359 1483 15020 83645;83646;83647;83648 101185;101186;101187;101188;101189;101190;101191;101192;101193 101193 9 RPTPQDSPIFLPVDDTSFR Unmodified 2187.096 0.096032235 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 1 By MS/MS By MS/MS 5.71 1.03 1 2 2 2 3 4 62.277 62.46 3 1.309E-31 18885 20211116_3445_TMUAki_TMT10x_S_F6 191.32 175.55 38583000 62147000 644560 60222000 37013000 49561000 41068000 34511000 31770000 35459000 41775000 35926000 57983000 3443400 61413000 35609000 50809000 41157000 35877000 33082000 34592000 39989000 12 12 8 12 12 12 12 12 12 12 12 15904000 23525000 255740 23123000 14675000 28739000 18658000 13854000 12591000 14831000 15660000 14809000 21950000 1442400 23702000 14180000 28596000 18530000 14866000 13184000 14444000 15012000 5 5 3 5 5 5 5 5 5 5 5 22679000 38622000 388820 37099000 22338000 20822000 22410000 20657000 19178000 20629000 26115000 21117000 36033000 2001000 37711000 21429000 22212000 22627000 21010000 19898000 20148000 24978000 7 7 5 7 7 7 7 7 7 7 7 24699000000 12203000000 12496000000 16360 1092 15021 83649;83650;83651;83652;83653;83654;83655 101194;101195;101196;101197;101198;101199;101200;101201;101202;101203;101204;101205 101202 12 RPVFPPLCGDGLLSGKEETR Unmodified 2227.1419 0.14193657 2935 Q9NRX1 PNO1 RNA-binding protein PNO1 yes yes 0 0 0 2 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 55.63 55.963 4 2.1995E-18 16516 20211116_3436_TMUAki_TMT10x_P_F8 155.87 140.11 39640000 66986000 112940 70189000 51116000 61689000 41482000 53805000 52581000 51107000 53058000 36905000 62517000 3000900 71251000 48741000 63192000 42924000 55023000 53023000 50025000 51168000 5 5 1 5 5 5 5 5 5 5 5 19387000 31661000 112940 33067000 30779000 42350000 24414000 25393000 24115000 23459000 25951000 18048000 29549000 1409400 33773000 29329000 42190000 25088000 26615000 24611000 22991000 24977000 2 2 1 2 2 2 2 2 2 2 2 20253000 35324000 0 37122000 20337000 19339000 17068000 28413000 28466000 27648000 27107000 18857000 32968000 1591600 37478000 19412000 21003000 17837000 28408000 28412000 27034000 26191000 3 3 0 3 3 3 3 3 3 3 3 4121300000 2496000000 1625200000 16361 2935 15022 83656;83657;83658;83659 101206;101207;101208;101209;101210 101206 5 RPVGASFSFGGK Unmodified 1208.6302 0.63020611 401 O94979;O94979-9;O94979-6;O94979-3;O94979-10;O94979-4;O94979-2;O94979-8;O94979-7;O94979-5 SEC31A Protein transport protein Sec31A yes no 0 0 0 1 By MS/MS By MS/MS 3.2 0.748 1 2 2 2 3 42.659 42.672 3 9.0072E-12 11433 20211116_3431_TMUAki_TMT10x_P_F4 163.09 116.63 11833000 18113000 39509 20458000 20214000 19139000 12781000 14727000 14001000 12926000 15683000 11017000 16910000 1051000 20685000 19192000 19480000 13390000 15142000 14250000 12698000 15077000 5 5 1 5 5 5 5 5 5 5 5 7286900 10979000 39509 12646000 15327000 15422000 8706300 9213500 8764100 7820400 9519700 6784600 10251000 697120 12824000 14528000 15400000 9179100 9639300 8940300 7695200 9160000 3 3 1 3 3 3 3 3 3 3 3 4546100 7134500 0 7812300 4887500 3716900 4074300 5513500 5236900 5105400 6163700 4232600 6659800 353840 7860700 4664100 4079600 4211300 5502900 5309600 5003100 5917200 2 2 0 2 2 2 2 2 2 2 2 972120000 530750000 441370000 16362 401 15023 83660;83661;83662;83663;83664 101211;101212;101213;101214;101215 101213 5 RPVHGESDTEQLQDDDIETTKVEMLR Oxidation (M) 3056.4357 0.43567157 2701 Q9BW27;Q9BW27-3 NUP85 Nuclear pore complex protein Nup85 yes no 0 0 1 2 By matching By MS/MS 2.33 0.471 2 1 1 2 41.568 41.388 5 1.0275E-05 13629 20211116_3441_TMUAki_TMT10x_S_F3 75.43 67.243 218670 396910 0 458080 183620 192760 148440 418710 423430 329230 362120 203600 370590 16596 459030 175110 217820 160920 411630 416560 325230 351220 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 218670 396910 0 458080 183620 192760 148440 418710 423430 329230 362120 203600 370590 16596 459030 175110 217820 160920 411630 416560 325230 351220 1 1 0 1 1 1 1 1 1 1 1 417850000 285620000 132230000 16363 2701 15024 83665;83666;83667 101216 101216 2899 1 RPVSAMFIFSEEK Oxidation (M) 1555.7705 0.77046434 705 P17480;P17480-2 UBTF Nucleolar transcription factor 1 yes no 0 0 1 1 By MS/MS By MS/MS 7.2 0.748 1 2 2 2 3 50.886 51.188 3 0.0010085 16295 20211116_3446_TMUAki_TMT10x_S_F7 74.133 54.393 16811000 28304000 253420 29205000 20048000 24214000 18761000 23480000 24319000 22441000 23501000 15655000 26414000 1654900 29655000 19204000 24959000 19270000 23879000 24469000 21960000 22696000 4 4 3 4 4 4 4 4 4 4 4 5715800 9511100 189350 10007000 8943900 13347000 7664200 7339800 8243700 7423300 8319700 5323400 8876800 695560 10223000 8555100 13256000 7859000 7768300 8363900 7246600 8023300 1 1 1 1 1 1 1 1 1 1 1 11095000 18793000 64073 19198000 11104000 10867000 11097000 16140000 16076000 15018000 15181000 10331000 17537000 959310 19432000 10649000 11703000 11411000 16110000 16105000 14714000 14672000 3 3 2 3 3 3 3 3 3 3 3 2005800000 879040000 1126800000 16364 705 15025 83668;83669;83670;83671;83672 101217;101218;101219;101220;101221 101220 788 5 RPWEEDFR Unmodified 1133.5254 0.52540669 2161 Q8IXT5 RBM12B RNA-binding protein 12B yes yes 0 0 0 1 By MS/MS 4 0 1 1 36.881 37.013 3 0.020984 9643 20211116_3442_TMUAki_TMT10x_S_F4 61.56 40.096 233880 359210 349.21 432400 183060 162410 206770 175150 180750 179470 290230 217770 335450 19004 431920 176150 182390 207690 177560 188910 175100 276590 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 233880 359210 349.21 432400 183060 162410 206770 175150 180750 179470 290230 217770 335450 19004 431920 176150 182390 207690 177560 188910 175100 276590 1 1 1 1 1 1 1 1 1 1 1 12498000 0 12498000 16365 2161 15026 83673 101222 101222 1 RPYAPINANAIK Unmodified 1326.7408 0.74081919 384 O94776;O94776-2 MTA2 Metastasis-associated protein MTA2 yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 39.772 39.512 3 2.1108E-06 11327 20211116_3429_TMUAki_TMT10x_P_F2 117.94 94.827 1050600 1684600 3442.8 2590900 4459600 3053200 2373100 1331700 1342400 1057300 1758800 978280 1575300 138060 2586100 4223800 3043200 2484300 1432600 1425500 1043900 1683800 1 1 1 1 1 1 1 1 1 1 1 1050600 1684600 3442.8 2590900 4459600 3053200 2373100 1331700 1342400 1057300 1758800 978280 1575300 138060 2586100 4223800 3043200 2484300 1432600 1425500 1043900 1683800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 180410000 180410000 0 16366 384 15027 83674;83675 101223;101224 101223 2 RPYTVILIER Unmodified 1258.7398 0.73975656 3267 Q9Y3A5 SBDS Ribosome maturation protein SBDS yes yes 0 0 0 1 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 44.974 44.908 3 0.00019134 13580 20211116_3429_TMUAki_TMT10x_P_F2 112.84 63.656 8347800 12657000 69326 13722000 12056000 12156000 9250500 9074900 9747000 8602100 10620000 7772600 11814000 738880 13900000 11489000 12411000 9545200 9368000 9925200 8420700 10217000 7 7 2 7 7 7 7 7 7 7 7 3980000 5843200 69326 6552000 8064700 8562700 4837700 4520800 4802000 4108000 5119400 3706200 5455000 439750 6664100 7655100 8508300 5074700 4788100 4898000 4029100 4928600 3 3 2 3 3 3 3 3 3 3 3 4367700 6813600 0 7170300 3991000 3592800 4412800 4554000 4945100 4494100 5500200 4066300 6359100 299140 7236200 3833600 3902400 4470500 4579900 5027200 4391600 5288700 4 4 0 4 4 4 4 4 4 4 4 1279100000 869830000 409270000 16367 3267 15028 83676;83677;83678;83679;83680;83681 101225;101226;101227;101228;101229;101230;101231 101226 7 RQAFTPSSTMMEVFLQEK Oxidation (M) 2145.0235 0.023460919 1685 Q14157;Q14157-1;Q14157-4;Q14157-3;Q14157-5 UBAP2L Ubiquitin-associated protein 2-like yes no 0 0 1 1 By MS/MS By MS/MS 7.8 0.4 1 4 2 3 61.002 61.23 3;4 1.4805E-10 18161 20211116_3447_TMUAki_TMT10x_S_F8 117.67 94.528 10639000 18106000 94916 16653000 12918000 14875000 11841000 14174000 12492000 12688000 13605000 9906500 16890000 984700 17064000 12364000 15247000 12087000 14402000 12720000 12453000 13090000 3 3 2 3 3 3 3 3 3 3 3 3885400 6106000 0 6089100 4387600 8312500 4937800 5115700 4403500 4673900 4799500 3617600 5697500 311440 6246300 4219700 8259200 4963300 5349400 4517200 4583000 4617700 1 1 0 1 1 1 1 1 1 1 1 6753500 12000000 94916 10563000 8530600 6562200 6902900 9057900 8088800 8014300 8805900 6288900 11192000 673260 10818000 8144400 6988100 7123700 9052300 8202500 7870200 8472500 2 2 2 2 2 2 2 2 2 2 2 2310400000 1275400000 1035000000 16368 1685 15029 83682;83683;83684;83685;83686 101232;101233;101234;101235;101236 101236 2257;2258 5 RQAFTPSSTMMEVFLQEK Unmodified 2129.0285 0.028546296 1685 Q14157;Q14157-1;Q14157-4;Q14157-3;Q14157-5 UBAP2L Ubiquitin-associated protein 2-like yes no 0 0 0 1 By MS/MS 2 0 1 1 73.656 73.566 3 0.0062473 23870 20211116_3440_TMUAki_TMT10x_S_F2 55.763 39.624 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16369 1685 15029 83687 101237 101237 1 RQAFTPSSTMMEVFLQEK 2 Oxidation (M) 2161.0184 0.018375541 1685 Q14157;Q14157-1;Q14157-4;Q14157-3;Q14157-5 UBAP2L Ubiquitin-associated protein 2-like yes no 0 0 2 1 By MS/MS 6.5 0.5 1 1 2 49.663 49.979 3 9.903E-24 15752 20211116_3446_TMUAki_TMT10x_S_F7 168.05 156.36 1233300 2314600 5118.4 1959600 1259600 1586000 1123000 2394800 3497400 2733100 2109700 1148400 2158400 107390 2018600 1204600 1656900 1219700 2404200 3404900 2655400 2078100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1233300 2314600 5118.4 1959600 1259600 1586000 1123000 2394800 3497400 2733100 2109700 1148400 2158400 107390 2018600 1204600 1656900 1219700 2404200 3404900 2655400 2078100 1 1 1 1 1 1 1 1 1 1 1 766450000 0 766450000 16370 1685 15029 83688;83689 101238 101238 2257;2258 1 RQAHLCVLASNCDEPMYVK Oxidation (M) 2306.0606 0.060591481 801 P25398 RPS12 40S ribosomal protein S12 yes yes 0 0 1 1 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 38.473 38.841 4 1.3857E-17 10722 20211116_3435_TMUAki_TMT10x_P_F7 146.3 128.47 1420300 2057200 29311 2902300 2381400 2140000 1402900 1053200 1082400 969440 1558600 1322600 1922800 149890 2889800 2260000 2202700 1464300 1123200 1132100 950260 1488700 5 5 2 5 5 5 5 5 5 5 5 1113700 1627400 28801 2203800 2223600 2031400 1232700 918980 949300 845650 1253300 1037100 1520700 127860 2204900 2108500 2055100 1293500 988300 988940 828920 1199600 3 3 1 3 3 3 3 3 3 3 3 306610 429870 509.87 698530 157810 108630 170190 134250 133100 123790 305220 285480 402120 22033 684820 151540 147630 170840 134890 143140 121330 289100 2 2 1 2 2 2 2 2 2 2 2 318260000 295260000 23005000 16371 801 15030 83690;83691;83692 101239;101240;101241;101242;101243 101241 950 5 RQAHLCVLASNCDEPMYVK Unmodified 2290.0657 0.065676859 801 P25398 RPS12 40S ribosomal protein S12 yes yes 0 0 0 1 By MS/MS 7 0 1 1 42.59 43.165 4 2.1327E-06 12857 20211116_3446_TMUAki_TMT10x_S_F7 94.384 57.747 333430 522660 0 740280 207770 156540 228100 273620 277830 249510 366920 310420 488510 20652 731110 199390 198110 231850 271570 283630 244680 351200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 333430 522660 0 740280 207770 156540 228100 273620 277830 249510 366920 310420 488510 20652 731110 199390 198110 231850 271570 283630 244680 351200 1 1 0 1 1 1 1 1 1 1 1 118300000 0 118300000 16372 801 15030 83693 101244 101244 1 RQAQQERDELADEIANSSGK Unmodified 2244.0731 0.073064962 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 2 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 41.476 41.184 4 3.2342E-41 13498 20211116_3441_TMUAki_TMT10x_S_F3 204.23 187.74 1197800 1869900 44951 2733300 1522200 1625400 1152700 1450900 1703300 1362700 1621300 1115600 1748100 145740 2710900 1453000 1720300 1205600 1481300 1705800 1334500 1566500 2 2 2 2 2 2 2 2 2 2 2 556420 815300 20373 1170100 1208900 1270300 818260 681630 788000 576800 764000 518240 762090 74257 1170100 1150600 1274700 849490 719610 802130 567650 737750 1 1 1 1 1 1 1 1 1 1 1 641380 1054600 24578 1563300 313280 355070 334460 769240 915300 785880 857300 597370 985970 71485 1540800 302410 445550 356130 761700 903690 766850 828800 1 1 1 1 1 1 1 1 1 1 1 468420000 203370000 265040000 16373 934 15031 83694;83695 101245;101246 101246 2 RQATDDATLLIVNR Unmodified 1584.8584 0.85836815 310 O75150;O75150-3;O75150-4 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 0 0 0 1 By MS/MS 5 0 1 1 42.903 43.006 3 2.094E-09 11882 20211116_3433_TMUAki_TMT10x_P_F5 132.95 103.65 4622300 7239800 23328 7991300 7922300 7257800 4981900 3885400 3976600 3454900 5498000 4303700 6758300 424170 8088400 7522000 7363200 5176000 4107700 4143500 3392000 5256600 2 2 1 2 2 2 2 2 2 2 2 4622300 7239800 23328 7991300 7922300 7257800 4981900 3885400 3976600 3454900 5498000 4303700 6758300 424170 8088400 7522000 7363200 5176000 4107700 4143500 3392000 5256600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 225970000 225970000 0 16374 310 15032 83696 101247;101248 101247 2 RQAVDVSPLRR Unmodified 1295.7422 0.74221618 1055 P46782 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes yes 0 0 0 2 By MS/MS By MS/MS 1.5 0.764 4 1 1 3 3 28.831 28.773 3;4 2.9847E-14 7089 20211116_3429_TMUAki_TMT10x_P_F2 184.87 130.85 708950 1163400 13099 1109200 929660 941090 742610 699590 689470 655570 882480 660170 1085400 65655 1132900 887300 963670 761390 722160 710600 642080 845330 6 6 4 6 6 6 6 6 6 6 6 299900 509770 4788.9 454920 500110 582340 334020 326500 326690 304230 397080 279270 475460 26767 469870 475640 579640 347270 344210 335170 298040 380870 3 3 2 3 3 3 3 3 3 3 3 409050 653680 8309.9 654290 429550 358750 408590 373080 362780 351340 485410 380900 609960 38888 663020 411650 384020 414120 377950 375420 344030 464460 3 3 2 3 3 3 3 3 3 3 3 113970000 71593000 42380000 16375 1055 15033 83697;83698;83699;83700;83701;83702 101249;101250;101251;101252;101253 101251 5 RQAVTNPNNTFYATK Unmodified 1723.8642 0.86418181 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 1.83 0.687 2 3 1 3 3 33.908 33.796 3;4 1.9883E-33 10212 20211116_3439_TMUAki_TMT10x_S_F1 222.75 204.34 11439000 16012000 15447 27383000 35908000 19102000 13239000 12126000 21709000 10759000 19829000 10650000 14984000 1145600 27008000 33851000 19814000 14877000 12640000 21647000 10564000 19186000 8 8 4 8 8 8 8 8 8 8 8 4982700 7018800 4779.8 11538000 30903000 14739000 7958400 3842400 9388100 4389900 7821800 4638500 6566200 660350 11499000 29047000 14573000 9316600 4473000 9432700 4264800 7593900 3 3 2 3 3 3 3 3 3 3 3 6456100 8993500 10667 15845000 5005000 4363000 5281000 8283600 12320000 6369500 12007000 6011100 8417500 485250 15509000 4804000 5241100 5560300 8167000 12215000 6299600 11592000 5 5 2 5 5 5 5 5 5 5 5 3977100000 2615700000 1361400000 16376 972 15034 83703;83704;83705;83706;83707;83708 101254;101255;101256;101257;101258;101259;101260;101261 101257 8 RQAVTNPNNTFYATKR Unmodified 1879.9653 0.96529283 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 2 By MS/MS 5 0 1 1 32.029 31.969 4 2.7075E-10 7465 20211116_3433_TMUAki_TMT10x_P_F5 126.07 113.91 202560 337550 0 378410 801500 672150 356910 308640 401760 229330 356290 188590 315130 23505 387550 757230 658460 386660 329770 405140 227240 345110 1 1 0 1 1 1 1 1 1 1 1 202560 337550 0 378410 801500 672150 356910 308640 401760 229330 356290 188590 315130 23505 387550 757230 658460 386660 329770 405140 227240 345110 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 45150000 45150000 0 16377 972 15035 83709 101262 101262 1 RQDEDYDEQVEESLQDEDDNDVYILTK Unmodified 3302.4222 0.42224915 84 O00410;O00410-2;O00410-3 IPO5 Importin-5 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 4 2 2 71.743 71.679 3;4 5.7417E-52 22886 20211116_3428_TMUAki_TMT10x_P_F1 203.33 191.92 25970000 45556000 448840 43044000 26320000 37284000 31585000 22729000 20046000 23743000 29872000 24183000 42500000 2408500 44003000 25385000 38010000 31406000 23875000 21247000 23147000 28512000 7 7 4 7 7 7 7 7 7 7 7 15138000 26128000 309370 24368000 13869000 26075000 18669000 13070000 11312000 13573000 15876000 14096000 24373000 1376700 25010000 13428000 26166000 18458000 13960000 11992000 13235000 15174000 3 3 1 3 3 3 3 3 3 3 3 10832000 19429000 139460 18675000 12451000 11208000 12917000 9659700 8734400 10170000 13996000 10087000 18126000 1031800 18993000 11957000 11844000 12948000 9914800 9255500 9911400 13339000 4 4 3 4 4 4 4 4 4 4 4 9705900000 4693700000 5012200000 16378 84 15036 83710;83711;83712;83713 101263;101264;101265;101266;101267;101268;101269 101263 7 RQDLIDEWIAK Unmodified 1385.7303 0.73031409 417 O95251;O95251-2;O95251-4;O95251-3;O95251-5 KAT7 Histone acetyltransferase KAT7 yes no 0 0 0 1 By MS/MS 6 0 1 1 63.675 63.641 3 0.037082 19440 20211116_3445_TMUAki_TMT10x_S_F6 53.388 29.537 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16379 417 15037 83714 101270 101270 1 RQDLLNVLAR Unmodified 1196.699 0.69895438 2402 Q96A33;Q96A33-2 CCDC47 Coiled-coil domain-containing protein 47 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 47.756 47.635 3 2.0568E-11 15167 20211116_3439_TMUAki_TMT10x_S_F1 211.86 174.31 1825300 2701000 36423 3309600 3104200 3354700 2062400 2471500 2385600 2166400 2705800 1699800 2522600 203190 3334100 2952400 3394900 2156500 2548300 2424200 2128400 2600300 2 2 2 2 2 2 2 2 2 2 2 1137700 1471100 23766 1892100 2396500 2677300 1423200 1476000 1372900 1253300 1622500 1059400 1374200 134100 1912200 2274900 2652000 1493000 1554600 1407700 1233200 1557400 1 1 1 1 1 1 1 1 1 1 1 687670 1230000 12656 1417500 707650 677450 639220 995480 1012700 913060 1083400 640390 1148400 69088 1421800 677570 742940 663530 993610 1016400 895140 1042900 1 1 1 1 1 1 1 1 1 1 1 424180000 285850000 138330000 16380 2402 15038 83715;83716 101271;101272 101272 2 RQEALPLHQETK Unmodified 1448.7736 0.77357588 2107 Q86UP2;Q86UP2-3;Q86UP2-4;Q86UP2-2 KTN1 Kinectin yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 30.167 30.152 4 2.7703E-07 6736 20211116_3433_TMUAki_TMT10x_P_F5 123.28 85.554 633450 1013800 13335 914160 1031200 1075400 686150 457810 546280 496280 735490 589900 945650 70516 942050 980910 1071700 709700 497780 568580 483110 703640 2 2 2 2 2 2 2 2 2 2 2 633450 1013800 13335 914160 1031200 1075400 686150 457810 546280 496280 735490 589900 945650 70516 942050 980910 1071700 709700 497780 568580 483110 703640 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 56261000 56261000 0 16381 2107 15039 83717;83718 101273;101274 101274 2 RQEEEDLLRVEEQLGSDTK Unmodified 2273.1135 0.11353279 2040 Q70UQ0-4 yes yes 0 0 0 2 By MS/MS 1 0 1 1 59.524 59.524 4 1.1182E-08 17944 20211116_3428_TMUAki_TMT10x_P_F1 117.65 94.517 3709900 6124700 129120 5969300 4213800 7428900 4149500 4353300 4483700 4242900 4823900 3455300 5714400 434970 6122500 4046600 7409000 4222800 4578000 4558800 4148400 4642900 1 1 1 1 1 1 1 1 1 1 1 3709900 6124700 129120 5969300 4213800 7428900 4149500 4353300 4483700 4242900 4823900 3455300 5714400 434970 6122500 4046600 7409000 4222800 4578000 4558800 4148400 4642900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 343180000 343180000 0 16382 2040 15040 83719 101275 101275 1 RQEEIDYRPDGGAGDADFHYR Unmodified 2466.0949 0.094863036 2550 Q96S66;Q96S66-4;Q96S66-3;Q96S66-2 CLCC1 Chloride channel CLIC-like protein 1 yes no 0 0 0 2 By MS/MS 3 0 1 1 35.581 35.341 5 1.6809E-19 11157 20211116_3441_TMUAki_TMT10x_S_F3 155.16 146.97 166780 325310 0 337990 172060 159740 169510 247950 280080 235880 261570 155260 303600 9493.1 341240 164630 175710 175500 247290 279440 230870 252900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 166780 325310 0 337990 172060 159740 169510 247950 280080 235880 261570 155260 303600 9493.1 341240 164630 175710 175500 247290 279440 230870 252900 1 1 0 1 1 1 1 1 1 1 1 44108000 0 44108000 16383 2550 15041 83720 101276 101276 1 RQEIEQKLEVQAEEER Unmodified 2013.0127 0.012696536 2796 Q9H307 PNN Pinin yes yes 0 0 0 2 By MS/MS 3 0 1 1 43.505 43.178 4 5.5213E-07 14386 20211116_3441_TMUAki_TMT10x_S_F3 102.33 83.73 662230 1163500 0 1140800 703030 684290 582420 1300200 1172000 916210 1073600 616480 1085500 40561 1158600 670090 739110 615330 1279400 1163000 910640 1038700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 662230 1163500 0 1140800 703030 684290 582420 1300200 1172000 916210 1073600 616480 1085500 40561 1158600 670090 739110 615330 1279400 1163000 910640 1038700 1 1 0 1 1 1 1 1 1 1 1 48658000 0 48658000 16384 2796 15042 83721 101277 101277 1 RQELEQALGIR Unmodified 1311.7259 0.72589741 2475 Q96GM5;Q96GM5-2 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes no 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 46.362 46.927 3 6.6166E-18 12161 20211116_3434_TMUAki_TMT10x_P_F6 193.62 167.18 1035500 1634400 30542 1848500 2144000 2409200 1403300 1394800 1372700 1280200 1532000 964340 1525800 129840 1879000 2039000 2397000 1461200 1465900 1403500 1255000 1472900 1 1 1 1 1 1 1 1 1 1 1 1035500 1634400 30542 1848500 2144000 2409200 1403300 1394800 1372700 1280200 1532000 964340 1525800 129840 1879000 2039000 2397000 1461200 1465900 1403500 1255000 1472900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 287280000 287280000 0 16385 2475 15043 83722;83723 101278;101279 101278 2 RQELLEEEGEGQEPPLEAERAPR Unmodified 2661.2994 0.29943608 2036 Q6ZU35 KIAA1211 Uncharacterized protein KIAA1211 yes yes 0 0 0 2 By MS/MS 1 0 1 1 39.695 39.556 4 6.2708E-69 11801 20211116_3439_TMUAki_TMT10x_S_F1 240.87 222.36 555060 1020200 5971.9 1043900 713440 572670 466050 1247600 1510900 993100 1184600 516820 952020 49543 1056200 677950 627630 518020 1226800 1479800 980400 1152800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 555060 1020200 5971.9 1043900 713440 572670 466050 1247600 1510900 993100 1184600 516820 952020 49543 1056200 677950 627630 518020 1226800 1479800 980400 1152800 2 2 1 2 2 2 2 2 2 2 2 44770000 0 44770000 16386 2036 15044 83724 101280;101281 101280 2 RQELVTK Unmodified 872.50797 0.50796571 494 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 1 By MS/MS 5 0 1 1 29.773 29.706 3 0.013479 6594 20211116_3433_TMUAki_TMT10x_P_F5 83.948 49.14 452870 649390 0 600060 492160 684880 444340 306820 391860 430350 505110 421630 605770 33218 616920 470390 683980 451590 334730 404970 415220 483750 1 1 0 1 1 1 1 1 1 1 1 452870 649390 0 600060 492160 684880 444340 306820 391860 430350 505110 421630 605770 33218 616920 470390 683980 451590 334730 404970 415220 483750 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25419000 25419000 0 16387 494 15045 83725 101282 101282 1 RQEQIAK Unmodified 871.48756 0.48756462 1365 P62753 RPS6 40S ribosomal protein S6 yes yes 0 0 0 1 By MS/MS 5 0 1 1 26.332 26.258 3 0.031111 5161 20211116_3433_TMUAki_TMT10x_P_F5 66.429 25.857 97872 148450 0 127680 76163 121300 91172 66443 76425 64047 92034 91107 138440 5176.6 131630 73234 122730 91238 70252 78949 62650 88298 1 1 0 1 1 1 1 1 1 1 1 97872 148450 0 127680 76163 121300 91172 66443 76425 64047 92034 91107 138440 5176.6 131630 73234 122730 91238 70252 78949 62650 88298 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1877200 1877200 0 16388 1365 15046 83726 101283 101283 1 RQGGLGPIR Unmodified 952.55665 0.55664724 1605 Q13162 PRDX4 Peroxiredoxin-4 yes yes 0 0 0 1 By MS/MS 3 0 1 1 26.272 25.979 3 0.04476 7486 20211116_3441_TMUAki_TMT10x_S_F3 49.715 32.475 513040 905570 13250 725040 586760 516570 569180 463110 526180 457980 643900 477790 844320 55916 749290 562980 537900 576940 473410 541350 447500 617500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 513040 905570 13250 725040 586760 516570 569180 463110 526180 457980 643900 477790 844320 55916 749290 562980 537900 576940 473410 541350 447500 617500 2 2 2 2 2 2 2 2 2 2 2 51614000 0 51614000 16389 1605 15047 83727 101284;101285 101284 2 RQGVQVQVSTSNISSLEGAR Unmodified 2115.1032 0.10324288 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 1 By MS/MS By MS/MS 4.62 2.78 2 1 2 1 2 5 3 42.442 42.496 3 4.4217E-91 11009 20211116_3436_TMUAki_TMT10x_P_F8 320.25 287.55 3247800 5276800 41457 6131500 5207400 5439300 3669900 4185300 4524500 4062500 4558400 3024300 4927000 293930 6184500 4956500 5555700 3829300 4314900 4566700 3972700 4396300 9 9 5 9 9 9 9 9 9 9 9 2017900 3236600 29218 3680700 4157100 4484200 2741300 2393400 2557700 2483900 2679600 1879000 3021700 186210 3735600 3951900 4471700 2849000 2541600 2614400 2422200 2581200 5 5 3 5 5 5 5 5 5 5 5 1229900 2040200 12239 2450800 1050300 955040 928570 1791900 1966800 1578700 1878800 1145300 1905200 107720 2448900 1004600 1084000 980390 1773300 1952300 1550600 1815100 4 4 2 4 4 4 4 4 4 4 4 1009800000 670060000 339760000 16390 1092 15048 83728;83729;83730;83731;83732;83733;83734;83735 101286;101287;101288;101289;101290;101291;101292;101293;101294;101295 101290 10 RQGYGEGFR Unmodified 1068.5101 0.51009098 2919 Q9NR31;Q9NR31-2;Q9Y6B6 SAR1A;SAR1B GTP-binding protein SAR1a;GTP-binding protein SAR1b yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 27.193 27.183 3 0.027122 5691 20211116_3433_TMUAki_TMT10x_P_F5 56.202 41.967 398170 622260 3687.8 535780 528580 659490 404880 344410 375330 374930 448240 370760 580310 38274 554540 503940 657130 416240 366990 385710 364920 430140 2 2 2 2 2 2 2 2 2 2 2 398170 622260 3687.8 535780 528580 659490 404880 344410 375330 374930 448240 370760 580310 38274 554540 503940 657130 416240 366990 385710 364920 430140 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9129300 9129300 0 16391 2919 15049 83736;83737 101296 101296 1 RQHSSQDVHVVLK Unmodified 1531.8219 0.82192306 3203 Q9UNZ2;Q9UNZ2-5;Q9UNZ2-6 NSFL1C NSFL1 cofactor p47 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 29.536 29.569 4 0.0010867 7784 20211116_3439_TMUAki_TMT10x_S_F1 74.326 58.102 297750 478470 3243.9 456540 312940 329560 330940 253890 286720 256620 370600 277220 446380 23137 465400 300400 341870 333380 262040 296600 250520 354910 3 3 2 3 3 3 3 3 3 3 3 86245 118750 226.69 102840 107090 135620 87228 57795 69361 65261 87532 80305 110740 7653.5 106530 102200 134390 88964 62914 71989 63430 83876 1 1 1 1 1 1 1 1 1 1 1 211500 359720 3017.2 353700 205850 193940 243710 196100 217350 191360 283070 196910 335640 15484 358870 198200 207480 244410 199130 224610 187090 271030 2 2 1 2 2 2 2 2 2 2 2 6942900 3716500 3226400 16392 3203 15050 83738;83739 101297;101298;101299 101298 3 RQLDTETNLHLNTK Unmodified 1681.8747 0.87474649 641 P12270 TPR Nucleoprotein TPR yes yes 0 0 0 1 By MS/MS By MS/MS 4.75 0.433 1 3 3 1 34.997 35.027 3;4 4.0829E-14 7374 20211116_3444_TMUAki_TMT10x_S_F5 150.9 121.55 2235600 3140200 45205 4202100 3340200 2833800 2259400 1773300 2204400 1823300 2634500 2081900 2934100 238700 4191400 3178100 2947500 2346600 1858000 2260200 1778700 2528100 3 3 2 3 3 3 3 3 3 3 3 1492200 1986800 12996 2683100 2769900 2321800 1615400 1173100 1447900 1157200 1694400 1389400 1856500 149470 2682600 2627400 2361700 1693800 1250200 1489000 1130900 1626900 2 2 1 2 2 2 2 2 2 2 2 743420 1153400 32209 1519000 570280 512050 644010 600190 756510 666090 940080 692440 1077600 89228 1508700 550610 585730 652870 607760 771210 647820 901180 1 1 1 1 1 1 1 1 1 1 1 361070000 285230000 75833000 16393 641 15051 83740;83741;83742;83743 101300;101301;101302 101302 3 RQLEDGDQPESK Unmodified 1400.6532 0.65318598 2380 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 0 1 By MS/MS 3 0 1 1 29.531 29.268 3 1.9269E-08 8770 20211116_3441_TMUAki_TMT10x_S_F3 121.66 97.364 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16394 2380 15052 83744 101303 101303 1 RQLEEAEEEAQR Unmodified 1486.7012 0.7011988 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 32.984 32.99 3 9.1984E-09 7149 20211116_3428_TMUAki_TMT10x_P_F1 123.95 105.11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16395 934 15053 83745;83746 101304;101305 101304 2 RQLEEAEEEATR Unmodified 1459.6903 0.69029976 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 34.524 34.413 3 3.0309E-18 9694 20211116_3439_TMUAki_TMT10x_S_F1 185.32 138.56 396710 589070 14775 780080 1000500 692960 513570 362460 351160 288600 500380 369490 550380 55117 781020 948010 703890 541370 382990 369640 284910 478080 1 1 1 1 1 1 1 1 1 1 1 396710 589070 14775 780080 1000500 692960 513570 362460 351160 288600 500380 369490 550380 55117 781020 948010 703890 541370 382990 369640 284910 478080 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 144380000 144380000 0 16396 935 15054 83747;83748;83749 101306;101307 101307 2 RQLSLDINRLPGEK Unmodified 1637.9213 0.92130275 1766 Q15059 BRD3 Bromodomain-containing protein 3 yes yes 0 0 0 2 By MS/MS By MS/MS 1 0 2 1 1 45.529 45.419 4 5.6014E-14 12118 20211116_3428_TMUAki_TMT10x_P_F1 153.72 110.92 4980100 7207800 29615 9049000 8279100 7614600 5533100 4610000 5302700 4915900 6141700 4636800 6732500 448060 9079900 7868700 7778200 5748900 4848000 5434400 4788500 5898700 3 3 1 3 3 3 3 3 3 3 3 3545600 5103100 0 6518400 7163100 6488100 4190200 3396300 3683000 3489000 4283400 3301000 4767000 305990 6549400 6791100 6542000 4390000 3612000 3790300 3403700 4113500 2 2 0 2 2 2 2 2 2 2 2 1434500 2104700 29615 2530600 1116000 1126500 1342900 1213700 1619600 1426900 1858200 1335900 1965500 142070 2530500 1077600 1236100 1358800 1236000 1644100 1384800 1785200 1 1 1 1 1 1 1 1 1 1 1 782570000 485280000 297290000 16397 1766 15055 83750;83751 101308;101309;101310 101309 3 RQMSVPGIFNPHEIPEEMCD 2 Oxidation (M) 2417.045 0.045000997 153 O14980 XPO1 Exportin-1 yes yes 0 0 2 1 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 49.549 49.62 3 0.00073573 14663 20211116_3442_TMUAki_TMT10x_S_F4 61.862 58.764 1892400 3483600 18052 3719400 3128900 3665600 2340000 2703100 2885500 2473300 2891800 1762100 3251400 191040 3777000 2981400 3716000 2431700 2790000 2911800 2425100 2789400 3 3 3 3 3 3 3 3 3 3 3 1393100 2307500 8126.3 2392700 2381000 3081200 1804400 1849600 1826800 1606800 1918100 1297100 2153400 136910 2445300 2269100 3068800 1861200 1935400 1860700 1579300 1847500 2 2 2 2 2 2 2 2 2 2 2 499330 1176100 9926 1326700 747860 584460 535560 853520 1058700 866580 973700 465000 1098000 54130 1331700 712350 647240 570530 854610 1051100 845810 941930 1 1 1 1 1 1 1 1 1 1 1 978570000 728500000 250070000 16398 153 15056 83752;83753;83754 101311;101312;101313 101313 116;117 3 RQMSVPGIFNPHEIPEEMCD Oxidation (M) 2401.0501 0.050086375 153 O14980 XPO1 Exportin-1 yes yes 0 0 1 1 By MS/MS 4 0 1 1 56.33 56.283 3 0.0070157 17424 20211116_3442_TMUAki_TMT10x_S_F4 48.371 44.983 967590 1548300 0 1839300 1037300 1039900 847600 1997500 1772500 1523100 1552400 900860 1445900 74278 1843800 989370 1130200 898300 1968400 1754900 1507100 1504400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 967590 1548300 0 1839300 1037300 1039900 847600 1997500 1772500 1523100 1552400 900860 1445900 74278 1843800 989370 1130200 898300 1968400 1754900 1507100 1504400 1 1 0 1 1 1 1 1 1 1 1 426250000 0 426250000 16399 153 15056 83755 101314 101314 116;117 1 RQNIGVATFIGLDK Unmodified 1530.8518 0.85182621 2946 Q9NTJ3;Q9NTJ3-2 SMC4 Structural maintenance of chromosomes protein 4 yes no 0 0 0 1 By MS/MS 2 0 1 1 59.12 58.863 3 0.0049706 19225 20211116_3429_TMUAki_TMT10x_P_F2 61.649 38.77 4238400 8117800 68812 8094100 6817800 11294000 6015800 7040600 7887400 7243800 6627300 3946900 7574700 451650 8306900 6521300 11213000 6201900 7379100 7897500 7066300 6432100 1 1 1 1 1 1 1 1 1 1 1 4238400 8117800 68812 8094100 6817800 11294000 6015800 7040600 7887400 7243800 6627300 3946900 7574700 451650 8306900 6521300 11213000 6201900 7379100 7897500 7066300 6432100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 533510000 533510000 0 16400 2946 15057 83756 101315 101315 1 RQPEAVHLLDK Unmodified 1304.7201 0.72008375 2352 Q92621 NUP205 Nuclear pore complex protein Nup205 yes yes 0 0 0 1 By MS/MS 5 0 1 1 35.607 35.782 4 0.030102 7811 20211116_3444_TMUAki_TMT10x_S_F5 50.145 21.242 296620 442700 0 541100 263030 231930 265380 308540 350260 315800 381280 276160 413450 20673 540440 252040 257060 271690 310050 353710 308130 366850 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 296620 442700 0 541100 263030 231930 265380 308540 350260 315800 381280 276160 413450 20673 540440 252040 257060 271690 310050 353710 308130 366850 1 1 0 1 1 1 1 1 1 1 1 17041000 0 17041000 16401 2352 15058 83757 101316 101316 1 RQPPARPPGPSTDTGALADGVVSQAVK Unmodified 2671.4042 0.40417593 2378 Q92917 GPKOW G patch domain and KOW motifs-containing protein yes yes 0 0 0 2 By MS/MS 8 0 1 1 45.653 45.789 4 2.5385E-34 12386 20211116_3436_TMUAki_TMT10x_P_F8 179.5 163.56 2722900 4445100 0 5006700 4720100 6277600 3943500 3589700 3615200 3437200 4166500 2535200 4149800 126330 5087000 4505600 6256500 4030500 3780900 3711800 3363200 4002200 2 2 0 2 2 2 2 2 2 2 2 2722900 4445100 0 5006700 4720100 6277600 3943500 3589700 3615200 3437200 4166500 2535200 4149800 126330 5087000 4505600 6256500 4030500 3780900 3711800 3363200 4002200 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 953090000 953090000 0 16402 2378 15059 83758 101317;101318 101317 2 RQQDPSPGSNLGGGDDLK Unmodified 1839.8711 0.87111768 1671 Q13951-2 CBFB Core-binding factor subunit beta yes yes 0 0 0 1 By MS/MS 4 0 1 1 34.384 34.409 3 1.4329E-30 8134 20211116_3431_TMUAki_TMT10x_P_F4 170.22 144.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16403 1671 15060 83759 101319 101319 1 RQQEGFK Unmodified 891.45626 0.45626449 1779;2323 Q15233;Q15233-2;Q8WXF1;Q8WXF1-2 NONO;PSPC1 Non-POU domain-containing octamer-binding protein;Paraspeckle component 1 no no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 27.598 27.526 3 0.0015774 5709 20211116_3433_TMUAki_TMT10x_P_F5 121.85 77.402 768030 1208600 0 981390 760410 1122600 761670 454260 509130 593140 756550 715090 1126900 61065 1019300 728990 1119900 764710 499750 537780 573570 722160 1 1 0 1 1 1 1 1 1 1 1 768030 1208600 0 981390 760410 1122600 761670 454260 509130 593140 756550 715090 1126900 61065 1019300 728990 1119900 764710 499750 537780 573570 722160 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28316000 28316000 0 16404 1779;2323 15061 83760;83761 101320;101321 101321 2 RQQEQQVPILEK Unmodified 1494.8154 0.8154407 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.707 1 2 1 3 1 38.227 38.275 3 7.9393E-08 10097 20211116_3433_TMUAki_TMT10x_P_F5 137.62 95.069 3810000 5578900 8448.7 7153600 9819000 6573600 4699800 4783500 5433700 3795500 5870300 3547400 5211600 387380 7177900 9285400 6692300 5057600 4924300 5511200 3747600 5649300 6 6 2 6 6 6 6 6 6 6 6 2807300 3996200 967.32 4908300 8939200 5786400 3730300 3511500 3867500 2848900 4197200 2613700 3732300 299270 4956000 8439100 5789500 4060400 3665200 3940200 2809700 4038700 4 4 1 4 4 4 4 4 4 4 4 1002700 1582700 7481.3 2245300 879820 787190 969440 1272000 1566200 946600 1673100 933680 1479300 88110 2221900 846300 902770 997130 1259100 1571000 937910 1610700 2 2 1 2 2 2 2 2 2 2 2 540070000 409430000 130640000 16405 1092 15062 83762;83763;83764;83765 101322;101323;101324;101325;101326;101327 101323 6 RQQEVETELK Unmodified 1258.6517 0.65172941 560 P08621;P08621-2;P08621-3 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 0 0 0 1 By MS/MS 3 0 1 1 32.008 31.763 3 0.00012835 9744 20211116_3441_TMUAki_TMT10x_S_F3 117.09 68.651 253600 472060 2796.4 443630 403730 268940 339590 279870 344290 253890 374780 236150 440380 25734 451970 385670 285000 347960 283220 351130 249040 360600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 253600 472060 2796.4 443630 403730 268940 339590 279870 344290 253890 374780 236150 440380 25734 451970 385670 285000 347960 283220 351130 249040 360600 1 1 1 1 1 1 1 1 1 1 1 26046000 0 26046000 16406 560 15063 83766 101328 101328 1 RQQQEEEDLNLEDRGEETVLGGGTR Unmodified 2857.3438 0.34382009 1938 Q5T3I0;Q5T3I0-3 GPATCH4 G patch domain-containing protein 4 yes no 0 0 0 2 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 42.575 42.528 4 2.4515E-175 13015 20211116_3439_TMUAki_TMT10x_S_F1 412.1 369.46 1515200 2546200 1711.6 3141100 1848800 1892300 1401000 1385500 1740800 1549600 1837100 1410700 2378100 96233 3143700 1760600 1993400 1455100 1439100 1759500 1506600 1769200 4 4 1 4 4 4 4 4 4 4 4 617730 930660 0 1229100 1127900 1161000 766650 453200 694370 587540 653260 575080 869520 48401 1231800 1071800 1171000 794290 500530 708110 568290 631450 1 1 0 1 1 1 1 1 1 1 1 897480 1615600 1711.6 1911900 720900 731330 634400 932270 1046500 962040 1183800 835630 1508600 47832 1911900 688890 822370 660780 938620 1051400 938350 1137700 3 3 1 3 3 3 3 3 3 3 3 496830000 284490000 212340000 16407 1938 15064 83767;83768;83769 101329;101330;101331;101332 101330 4 RQQSEISAAVER Unmodified 1372.7059 0.70589025 3311 Q9Y520;Q9Y520-3;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520-7;Q9Y520-2 PRRC2C Protein PRRC2C yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 29.008 28.755 3 7.696E-12 8591 20211116_3441_TMUAki_TMT10x_S_F3 165.54 137.68 191670 311150 1390.8 286370 258310 249910 201780 180680 186750 172890 247210 178470 290250 18120 293350 246340 255280 207170 186960 192790 169170 236600 2 2 2 2 2 2 2 2 2 2 2 79784 125950 160.31 111120 127630 144950 80758 78887 75996 79872 106280 74288 117470 7434.3 114910 121210 144100 84220 83571 78596 77967 101580 1 1 1 1 1 1 1 1 1 1 1 111880 185200 1230.5 175250 130680 104950 121030 101790 110760 93014 140930 104180 172770 10686 178430 125130 111180 122950 103390 114200 91204 135020 1 1 1 1 1 1 1 1 1 1 1 9225100 3490100 5735100 16408 3311 15065 83770;83771 101333;101334 101334 2 RQREEEIEAQEK Unmodified 1543.759 0.75904803 370 O75937 DNAJC8 DnaJ homolog subfamily C member 8 yes yes 0 0 0 2 By MS/MS 3 0 1 1 28.182 27.898 4 0.001832 8262 20211116_3441_TMUAki_TMT10x_S_F3 77.644 45.582 166670 258700 0 267030 161590 192440 164090 191830 224320 170820 248420 155190 241430 13267 270710 154970 200640 168180 194440 226420 167690 238900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 166670 258700 0 267030 161590 192440 164090 191830 224320 170820 248420 155190 241430 13267 270710 154970 200640 168180 194440 226420 167690 238900 1 1 0 1 1 1 1 1 1 1 1 3028200 0 3028200 16409 370 15066 83772 101335 101335 1 RQRPDDPMASFLGQ Oxidation (M) 1632.7678 0.76783858 426 O95391 SLU7 Pre-mRNA-splicing factor SLU7 yes yes 0 0 1 2 By MS/MS 5 0 1 1 35.824 36 3 0.036247 7887 20211116_3444_TMUAki_TMT10x_S_F5 58.32 41.101 201080 342190 10486 404130 177240 148500 171820 309110 358470 255450 333770 187300 319530 26109 404080 170440 170660 180340 304570 355640 251690 322740 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 201080 342190 10486 404130 177240 148500 171820 309110 358470 255450 333770 187300 319530 26109 404080 170440 170660 180340 304570 355640 251690 322740 1 1 1 1 1 1 1 1 1 1 1 41060000 0 41060000 16410 426 15067 83773 101336 101336 321 1 RQTILPSCSYEDK Unmodified 1595.7614 0.76135622 89 O00451;O00451-3;O00451-2 GFRA2 GDNF family receptor alpha-2 yes no 0 0 0 1 By MS/MS 6 0 1 1 36.784 36.772 3 0.0017286 8097 20211116_3434_TMUAki_TMT10x_P_F6 72.662 50.616 110130 155430 2294.9 208380 302870 249250 144620 104690 112600 103860 148150 102560 145230 13969 209450 286570 248150 153980 113710 117220 101470 141810 1 1 1 1 1 1 1 1 1 1 1 110130 155430 2294.9 208380 302870 249250 144620 104690 112600 103860 148150 102560 145230 13969 209450 286570 248150 153980 113710 117220 101470 141810 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16851000 16851000 0 16411 89 15068 83774 101337 101337 1 RQTSGGPVDASSEYQQELER Unmodified 2236.0356 0.035616823 725 P18859;P18859-2 ATP5J ATP synthase-coupling factor 6, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 36.469 36.228 3 4.2343E-88 9993 20211116_3429_TMUAki_TMT10x_P_F2 284.98 262.97 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16412 725 15069 83775;83776;83777 101338;101339;101340 101338 3 RQVDADLQPAGSLPHAPR Unmodified 1927.0024 0.0024066216 2305 Q8WVB6 CHTF18 Chromosome transmission fidelity protein 18 homolog yes yes 0 0 0 1 By MS/MS By matching 5 0 2 1 1 34.479 34.544 4 0.041041 8687 20211116_3433_TMUAki_TMT10x_P_F5 38.377 21.692 1021900 1478700 0 1560300 2033800 1948600 1213200 1053400 1152900 1245300 1122900 951050 1380100 41194 1591800 1925700 1941000 1271700 1121900 1174400 1208300 1084100 1 1 0 1 1 1 1 1 1 1 1 1021900 1478700 0 1560300 2033800 1948600 1213200 1053400 1152900 1245300 1122900 951050 1380100 41194 1591800 1925700 1941000 1271700 1121900 1174400 1208300 1084100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 62402000 44585000 17818000 16413 2305 15070 83778;83779 101341 101341 1 RQVLIRPCSK Unmodified 1255.7183 0.71830961 1339 P62244 RPS15A 40S ribosomal protein S15a yes yes 0 0 0 2 By MS/MS 5 0 1 1 30.25 30.183 4 9.1902E-07 6763 20211116_3433_TMUAki_TMT10x_P_F5 155.98 130.56 973980 1561900 407630 2236000 2435800 2213000 1994500 1258900 1358600 362710 631480 909910 1460000 481120 2233100 2349200 2234500 2026500 1301300 1384200 391160 631680 1 1 1 1 1 1 1 1 1 1 1 973980 1561900 407630 2236000 2435800 2213000 1994500 1258900 1358600 362710 631480 909910 1460000 481120 2233100 2349200 2234500 2026500 1301300 1384200 391160 631680 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 84794000 84794000 0 16414 1339 15071 83780 101342 101342 1 RQVLLSAAEAAEVILR Unmodified 1738.0101 0.010117761 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 1 By MS/MS By MS/MS 2.85 1.61 1 5 6 1 4 9 48.489 48.395 2;3 2.1846E-60 26693 20211116_3429_TMUAki_TMT10x_P_F2 290.5 253.66 17757000 29436000 144370 26074000 19046000 24694000 21127000 15286000 15978000 18174000 20544000 16534000 27454000 1553000 26817000 18319000 25030000 21162000 16103000 16642000 17630000 19676000 13 13 8 13 13 13 13 13 13 13 13 8288500 13597000 77114 12023000 8022600 14905000 8984400 7191700 7421900 8733200 9466300 7717900 12682000 747260 12420000 7720800 14833000 9014600 7747500 7691500 8465800 9068500 3 3 2 3 3 3 3 3 3 3 3 9468900 15839000 67255 14051000 11024000 9789300 12143000 8094800 8556000 9440400 11077000 8816400 14773000 805730 14397000 10598000 10197000 12147000 8356000 8950700 9164500 10608000 10 10 6 10 10 10 10 10 10 10 10 3037500000 1309400000 1728100000 16415 1429 15072 83781;83782;83783;83784;83785;83786;83787;83788;83789;83790;83791;83792;83793 101343;101344;101345;101346;101347;101348;101349;101350;101351;101352;101353;101354;101355;101356;101357;101358;101359;101360;101361 101344 19 RQVSIEEGER Unmodified 1201.6051 0.60511357 742;743 P20340;P20340-2;P20340-4;Q53S08 RAB6A;RAB6C Ras-related protein Rab-6A no no 0 0 0 1 By MS/MS By matching 2.5 0.5 1 1 1 1 26.975 26.713 3 0.0010602 6169 20211116_3429_TMUAki_TMT10x_P_F2 83.137 57.578 55752 73395 0 83310 77498 89729 50071 46850 63339 47875 80413 51893 68522 2774.5 84386 73479 90050 52634 49829 64462 46715 77043 1 1 0 1 1 1 1 1 1 1 1 55752 73395 0 83310 77498 89729 50071 46850 63339 47875 80413 51893 68522 2774.5 84386 73479 90050 52634 49829 64462 46715 77043 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2212400 1587200 625200 16416 742;743 15073 83794;83795 101362 101362 1 RRDEDMLYSPELAQR Oxidation (M) 1893.9003 0.90030932 3253 Q9Y2W2 WBP11 WW domain-binding protein 11 yes yes 0 0 1 2 By MS/MS By MS/MS 3 0.816 2 2 2 4 2 33.171 33.026 3;4 1.4007E-10 8686 20211116_3429_TMUAki_TMT10x_P_F2 139.66 127.76 2526000 3965000 25431 4365800 4887800 4694500 3327000 3137600 3474600 2794000 3782300 2352100 3701200 254070 4430500 4648200 4727100 3460900 3258300 3539300 2742900 3639200 8 8 5 8 8 8 8 8 8 8 8 1610200 2616800 15725 2892300 4139700 3920000 2325500 2101900 2406900 1885900 2549400 1499300 2442800 175120 2946500 3924100 3889200 2456300 2222300 2450100 1850700 2454900 5 5 3 5 5 5 5 5 5 5 5 915790 1348100 9706.9 1473500 748110 774490 1001500 1035700 1067700 908080 1232900 852730 1258400 78954 1484000 724040 837990 1004600 1036000 1089200 892140 1184200 3 3 2 3 3 3 3 3 3 3 3 483670000 326610000 157060000 16417 3253 15074 83796;83797;83798;83799;83800;83801 101363;101364;101365;101366;101367;101368;101369;101370 101363 3228 8 RRDEDMLYSPELAQR Unmodified 1877.9054 0.90539469 3253 Q9Y2W2 WBP11 WW domain-binding protein 11 yes yes 0 0 0 2 By MS/MS 3 0 1 1 37.43 37.172 4 0.096694 11959 20211116_3441_TMUAki_TMT10x_S_F3 37.913 27.126 471080 840210 3755.9 887500 443930 381050 452360 506290 511980 456720 656300 438650 784180 42176 894480 426100 422240 460260 506950 523360 448100 628640 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 471080 840210 3755.9 887500 443930 381050 452360 506290 511980 456720 656300 438650 784180 42176 894480 426100 422240 460260 506950 523360 448100 628640 1 1 1 1 1 1 1 1 1 1 1 45195000 0 45195000 16418 3253 15074 83802 101371 101371 1 RREEEGLQLR Unmodified 1284.6898 0.68984626 1173 P52294 KPNA1 Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed yes yes 0 0 0 2 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 27.795 27.534 4 0.0036876 6574 20211116_3429_TMUAki_TMT10x_P_F2 77.662 0 130450 214810 2122.1 188680 196170 280550 169640 210660 132080 131940 176400 121470 200340 13713 195700 187560 278570 172300 215360 137590 132110 168800 2 2 2 2 2 2 2 2 2 2 2 73517 117030 912.93 114930 124110 198960 103760 134020 71058 70360 97742 68459 109200 7654.5 118650 118550 196040 105300 137630 74667 71340 93462 1 1 1 1 1 1 1 1 1 1 1 56928 97774 1209.1 73753 72063 81588 65874 76646 61024 61585 78659 53014 91144 6058.6 77054 69015 82522 66992 77727 62919 60767 75334 1 1 1 1 1 1 1 1 1 1 1 9617800 2715000 6902900 16419 1173 15075 83803;83804 101372;101373 101372 2 RREEGPPPPSPDGASSDAEPEPPSGR Unmodified 2670.227 0.22699942 2946 Q9NTJ3;Q9NTJ3-2 SMC4 Structural maintenance of chromosomes protein 4 yes no 0 0 0 2 By MS/MS 1 0 1 1 29.589 29.589 4 3.8465E-12 5821 20211116_3428_TMUAki_TMT10x_P_F1 114.57 106.08 28064 46378 1484.4 46066 73015 64563 27370 27900 39790 22270 42085 26141 43274 4339.6 47293 68952 63807 30534 30048 40017 21982 40527 1 1 1 1 1 1 1 1 1 1 1 28064 46378 1484.4 46066 73015 64563 27370 27900 39790 22270 42085 26141 43274 4339.6 47293 68952 63807 30534 30048 40017 21982 40527 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3232000 3232000 0 16420 2946 15076 83805 101374 101374 1 RREELFIEQK Unmodified 1346.7306 0.73064844 3185 Q9UMY1;Q9UMY1-2 NOL7 Nucleolar protein 7 yes no 0 0 0 2 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.36 35.413 4 0.00071723 7626 20211116_3444_TMUAki_TMT10x_S_F5 98.04 50.437 2524100 3613900 4373.5 4359600 4736500 4125200 2574100 2434800 2598100 2239000 3334300 2350100 3375000 230630 4391300 4486600 4178900 2724800 2555000 2668200 2194800 3193700 3 3 2 3 3 3 3 3 3 3 3 1892900 2696500 428.95 3113200 4177300 3688500 2007900 1812000 1963200 1678100 2453300 1762300 2517600 175630 3155100 3950000 3680000 2148800 1933000 2016500 1644500 2351500 2 2 1 2 2 2 2 2 2 2 2 631230 917470 3944.5 1246400 559220 436620 566160 622880 634970 560860 880970 587770 857330 55001 1236200 536620 498940 576050 622050 651690 550320 842230 1 1 1 1 1 1 1 1 1 1 1 143290000 102930000 40362000 16421 3185 15077 83806;83807;83808 101375;101376;101377 101377 3 RRFETANLDIPPANASR Unmodified 1927.0024 0.0024066216 2949 Q9NTZ6 RBM12 RNA-binding protein 12 yes yes 0 0 0 2 By MS/MS By MS/MS 6.64 2.67 2 1 8 6 5 34.872 35.22 3;4 2.5631E-07 8175 20211116_3436_TMUAki_TMT10x_P_F8 109.89 84.573 745380 1225700 10469 1299800 928610 872420 782100 905160 960250 791450 1049900 694070 1144000 62754 1314400 887100 915860 806490 915250 972280 777650 1010000 10 10 5 10 10 10 10 10 10 10 10 208490 313950 5589.7 340700 395240 408640 264610 235790 242330 210840 269360 194150 293050 19664 346700 375860 408220 274550 247710 248460 206950 259010 4 4 2 4 4 4 4 4 4 4 4 536890 911730 4878.9 959130 533370 463770 517480 669370 717920 580600 780540 499920 850910 43089 967710 511240 507640 531940 667540 723820 570710 751020 6 6 3 6 6 6 6 6 6 6 6 177710000 105340000 72371000 16422 2949 15078 83809;83810;83811;83812;83813;83814;83815;83816;83817;83818;83819 101378;101379;101380;101381;101382;101383;101384;101385;101386;101387;101388 101380 11 RRGDALIEMESEQDVQK Oxidation (M) 2018.9691 0.96911716 1569 Q12849;Q12849-5 GRSF1 G-rich sequence factor 1 yes no 0 0 1 2 By MS/MS By matching 2.5 0.5 1 1 1 1 34.74 34.509 4 1.7062E-21 9312 20211116_3429_TMUAki_TMT10x_P_F2 165.58 132.88 255470 337570 21331 549390 625560 524550 349970 261770 348610 223270 362500 238030 315780 46244 545130 594180 530000 369360 278260 355200 219640 349260 1 1 1 1 1 1 1 1 1 1 1 255470 337570 21331 549390 625560 524550 349970 261770 348610 223270 362500 238030 315780 46244 545130 594180 530000 369360 278260 355200 219640 349260 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 81639000 62333000 19306000 16423 1569 15079 83820;83821 101389 101389 2112 1 RRLDECEEAFQGTK Unmodified 1737.8104 0.81043168 1307 P61289;P61289-2;P61289-3 PSME3 Proteasome activator complex subunit 3 yes no 0 0 0 2 By MS/MS By MS/MS 4.17 1.07 1 2 3 4 2 34.234 34.257 3;4 1.434E-13 8186 20211116_3431_TMUAki_TMT10x_P_F4 147.75 127.66 6684500 9835700 124860 13770000 20702000 14507000 8972200 7148100 10271000 6698400 10387000 6224800 9192400 856620 13781000 19562000 14568000 9754400 7625700 10396000 6560500 10017000 9 9 7 9 9 9 9 9 9 9 9 5779300 8414000 113800 11906000 19953000 13869000 8262600 6173600 9088700 5804800 8980600 5381900 7864200 777720 11929000 18845000 13835000 9017900 6654200 9206200 5684500 8666600 6 6 5 6 6 6 6 6 6 6 6 905260 1421700 11062 1863800 748780 637890 709600 974550 1182000 893570 1406600 842940 1328200 78901 1851800 717370 733030 736450 971440 1189800 876050 1350000 3 3 2 3 3 3 3 3 3 3 3 516940000 486370000 30572000 16424 1307 15080 83822;83823;83824;83825;83826;83827 101390;101391;101392;101393;101394;101395;101396;101397;101398 101392 9 RRPEPIIPVTQPR Unmodified 1557.9103 0.91034414 2365 Q92797;Q92797-2 SYMPK Symplekin yes no 0 0 0 2 By MS/MS By matching 1.33 0.471 2 1 2 1 31.795 31.737 4 5.287E-10 8221 20211116_3429_TMUAki_TMT10x_P_F2 139.89 121.11 403240 608780 9004.6 629720 764470 900980 522910 521360 522230 518890 603740 375530 568130 46883 644990 727480 892600 543020 549170 534200 506880 579890 2 2 2 2 2 2 2 2 2 2 2 403240 608780 9004.6 629720 764470 900980 522910 521360 522230 518890 603740 375530 568130 46883 644990 727480 892600 543020 549170 534200 506880 579890 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 144270000 117890000 26374000 16425 2365 15081 83828;83829;83830 101399;101400 101400 2 RRPGASPTGETPTIEEGEEDEDEASEAEGAR Unmodified 3271.4349 0.43487952 496 P04920;P04920-2;P04920-3 SLC4A2 Anion exchange protein 2 yes no 0 0 0 2 By MS/MS 1.5 0.5 1 1 2 34.765 34.653 4 1.0279E-69 7876 20211116_3428_TMUAki_TMT10x_P_F1 235.63 229.06 37748 92489 0 94204 133700 125560 69727 57365 44008 41326 64199 35147 86308 0 96451 126590 124450 73276 61286 46612 41022 61305 1 1 0 1 1 1 1 1 1 1 1 37748 92489 0 94204 133700 125560 69727 57365 44008 41326 64199 35147 86308 0 96451 126590 124450 73276 61286 46612 41022 61305 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 149230000 149230000 0 16426 496 15082 83831;83832 101401 101401 1 RRPLNNNSEIALSLSR Unmodified 1839.0075 0.0074919995 458 O96017;O96017-5;O96017-2;O96017-8;O96017-7;O96017-12;O96017-9 CHEK2 Serine/threonine-protein kinase Chk2 yes no 0 0 0 2 By matching By MS/MS 3 0 2 1 1 34.657 34.527 4 6.8225E-21 10812 20211116_3441_TMUAki_TMT10x_S_F3 163.64 117.48 203180 330050 1059.7 400670 197210 178040 204420 274890 262570 203040 339500 189190 308240 17749 400430 189340 197280 208770 272450 267310 201260 325120 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 203180 330050 1059.7 400670 197210 178040 204420 274890 262570 203040 339500 189190 308240 17749 400430 189340 197280 208770 272450 267310 201260 325120 1 1 1 1 1 1 1 1 1 1 1 35941000 999710 34941000 16427 458 15083 83833;83834 101402 101402 1 RRPSLLSEFQPGNER Unmodified 1784.9282 0.92817905 3336 Q9Y618;Q9Y618-5;Q9Y618-4 NCOR2 Nuclear receptor corepressor 2 yes no 0 0 0 2 By MS/MS 1 0 1 1 38.152 38.152 4 0.0013334 9240 20211116_3428_TMUAki_TMT10x_P_F1 72.315 58.41 969940 1526600 23607 1629800 1929200 1529300 1273100 877840 876710 795480 1173300 903240 1424800 110010 1653800 1834300 1549500 1313400 922940 919770 780310 1122700 2 2 1 2 2 2 2 2 2 2 2 969940 1526600 23607 1629800 1929200 1529300 1273100 877840 876710 795480 1173300 903240 1424800 110010 1653800 1834300 1549500 1313400 922940 919770 780310 1122700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 58464000 58464000 0 16428 3336 15084 83835 101403;101404 101403 2 RRPYNDDADIDYINER Unmodified 2023.9348 0.93478057 453 O95926;O95926-2 SYF2 Pre-mRNA-splicing factor SYF2 yes no 0 0 0 2 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 34.372 34.141 4 1.0851E-05 10673 20211116_3441_TMUAki_TMT10x_S_F3 99.747 82.678 709100 1123600 8574.4 1301000 1044800 1075900 884470 742570 858900 693370 999380 660280 1049100 67960 1311300 998050 1102500 904750 770340 879880 679200 959710 2 2 1 2 2 2 2 2 2 2 2 432820 688100 0 748710 836960 840210 588460 435840 496350 378010 582010 402970 642300 38022 760890 796040 841220 607050 461810 512020 371560 558790 1 1 0 1 1 1 1 1 1 1 1 276280 435470 8574.4 552260 207830 235730 296010 306730 362540 315360 417370 257310 406780 29938 550410 202010 261270 297700 308540 367860 307640 400920 1 1 1 1 1 1 1 1 1 1 1 122200000 98313000 23886000 16429 453 15085 83836;83837 101405;101406 101406 2 RRQQQEEDEQETAALLEEAR Unmodified 2428.1579 0.15785722 2703 Q9BW85 CCDC94 Coiled-coil domain-containing protein 94 yes yes 0 0 0 2 By MS/MS 1 0 1 1 39.8 39.662 4 4.9018E-24 11869 20211116_3439_TMUAki_TMT10x_S_F1 161.08 145.65 131140 213060 4721 260910 116050 96064 100940 198700 166130 164720 184050 122140 198980 15061 260320 111180 110340 105200 195830 166790 162270 176990 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 131140 213060 4721 260910 116050 96064 100940 198700 166130 164720 184050 122140 198980 15061 260320 111180 110340 105200 195830 166790 162270 176990 1 1 1 1 1 1 1 1 1 1 1 53460000 0 53460000 16430 2703 15086 83838 101407 101407 1 RSAAEMYGSSFDLDYDFQR Oxidation (M) 2272.9695 0.96951109 545 P07910-2;P07910-4 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 0 0 1 1 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 56.1 56.233 3 1.2638E-15 17395 20211116_3442_TMUAki_TMT10x_S_F4 131.94 121.56 34815000 61401000 452330 76585000 47005000 46180000 36951000 40101000 49999000 44671000 47888000 32418000 57351000 2612600 76602000 44832000 48784000 38411000 41216000 50220000 43440000 46261000 8 8 3 8 8 8 8 8 8 8 8 12820000 24061000 258750 30466000 27714000 31056000 16693000 14440000 17886000 16893000 17163000 11939000 22475000 825410 30637000 26310000 31228000 17546000 15594000 18118000 16397000 16578000 4 4 2 4 4 4 4 4 4 4 4 21995000 37340000 193570 46119000 19291000 15124000 20258000 25661000 32113000 27778000 30725000 20479000 34875000 1787100 45965000 18522000 17556000 20865000 25622000 32101000 27043000 29683000 4 4 1 4 4 4 4 4 4 4 4 11073000000 6826700000 4246100000 16431 545 15087 83839;83840;83841;83842;83843;83844 101408;101409;101410;101411;101412;101413;101414;101415;101416 101412 493 9 RSAAEMYGSSFDLDYDFQR Unmodified 2256.9746 0.97459647 545 P07910-2;P07910-4 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 0 0 0 1 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 61.3 61.347 3 2.3974E-51 18481 20211116_3445_TMUAki_TMT10x_S_F6 236.27 223.1 23727000 39876000 283270 43483000 25388000 25892000 27430000 17786000 16767000 18119000 27218000 22093000 37222000 2068000 43842000 24399000 27280000 27387000 18503000 17895000 17682000 25933000 10 10 7 10 10 10 10 10 10 10 10 9918700 16713000 159010 18095000 11807000 15967000 12345000 7839300 7351500 7606100 12140000 9235800 15600000 922200 18330000 11339000 16215000 12340000 8373700 7867300 7438100 11562000 4 4 3 4 4 4 4 4 4 4 4 13808000 23163000 124250 25388000 13581000 9924900 15085000 9946700 9415400 10513000 15078000 12857000 21622000 1145800 25511000 13060000 11065000 15047000 10129000 10028000 10244000 14370000 6 6 4 6 6 6 6 6 6 6 6 6364700000 3590300000 2774400000 16432 545 15087 83845;83846;83847;83848;83849;83850 101417;101418;101419;101420;101421;101422;101423;101424;101425;101426 101426 10 RSAAEMYGSSFDLDYDFQRDYYDR Oxidation (M) 2985.2512 0.25116526 545 P07910-2;P07910-4 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 0 0 1 2 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 58.586 58.64 4 3.9105E-11 18393 20211116_3442_TMUAki_TMT10x_S_F4 102.37 95.494 8628100 14551000 176500 14963000 9951300 12007000 8704000 10047000 11088000 10347000 11027000 8034700 13579000 870420 15192000 9519300 12370000 8967900 10323000 11174000 10093000 10640000 3 3 2 3 3 3 3 3 3 3 3 3249500 5837900 171950 5882600 4786900 6866500 3960600 3583600 4656100 3861600 4418400 3026900 5447600 451190 6012800 4579500 6860600 4082100 3817600 4697900 3760000 4269600 1 1 1 1 1 1 1 1 1 1 1 5378600 8712700 4547.4 9080600 5164400 5140800 4743400 6462900 6432000 6485500 6609100 5007800 8131300 419220 9178900 4939800 5509800 4885700 6505000 6475900 6333100 6370000 2 2 1 2 2 2 2 2 2 2 2 2572800000 1004600000 1568300000 16433 545 15088 83851;83852;83853 101427;101428 101428 493 2 RSAELPDAVGPIVQLQEK Unmodified 1949.0582 0.058190166 2535 Q96PU8;Q96PU8-9;Q96PU8-8;Q96PU8-6;Q96PU8-3;Q96PU8-5 QKI Protein quaking yes no 0 0 0 1 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 58.72 58.826 3 5.4158E-24 17458 20211116_3445_TMUAki_TMT10x_S_F6 175.8 153.33 27621000 46960000 337450 49712000 33981000 38405000 30030000 26355000 28276000 27076000 34516000 25720000 43829000 2654100 50351000 32501000 39551000 30613000 27425000 29064000 26414000 33103000 8 8 7 8 8 8 8 8 8 8 8 13731000 22694000 185500 24273000 19971000 26971000 17373000 13730000 14244000 13585000 17552000 12786000 21182000 1359200 24691000 19092000 27012000 17661000 14623000 14745000 13273000 16829000 4 4 3 4 4 4 4 4 4 4 4 13891000 24266000 151950 25439000 14010000 11434000 12657000 12625000 14032000 13491000 16964000 12935000 22647000 1294900 25659000 13409000 12539000 12952000 12802000 14319000 13140000 16274000 4 4 4 4 4 4 4 4 4 4 4 3148900000 1676100000 1472800000 16434 2535 15089 83854;83855;83856;83857;83858;83859 101429;101430;101431;101432;101433;101434;101435;101436;101437 101437 9 RSDEDYLYREELAQFHR Unmodified 2226.0454 0.045393648 696 P16435 POR NADPH--cytochrome P450 reductase yes yes 0 0 0 2 By MS/MS By MS/MS 3.67 0.745 3 2 1 3 3 44.949 44.977 4;5 2.9363E-21 13878 20211116_3430_TMUAki_TMT10x_P_F3 164.97 138.61 3999600 7022200 49889 7824200 5270300 5386000 4059600 6039400 6078700 5257100 6076700 3724300 6555500 381810 7888900 5025100 5652000 4243600 6084000 6095600 5166600 5862000 5 5 4 5 5 5 5 5 5 5 5 1058100 1795800 17044 1982500 2476300 2817400 1562200 1765300 1671700 1458700 1620900 985330 1676300 123470 2021700 2352500 2795000 1635700 1838800 1694100 1437200 1565200 2 2 2 2 2 2 2 2 2 2 2 2941500 5226400 32845 5841800 2794000 2568700 2497400 4274100 4407000 3798500 4455800 2738900 4879100 258340 5867100 2672600 2857000 2607900 4245300 4401500 3729400 4296800 3 3 2 3 3 3 3 3 3 3 3 1091900000 490810000 601070000 16435 696 15090 83860;83861;83862;83863;83864;83865 101438;101439;101440;101441;101442 101438 5 RSDYDREALLGVQEDVDEYVK Unmodified 2498.1925 0.1925114 1701 Q14257;Q14257-2 RCN2 Reticulocalbin-2 yes no 0 0 0 2 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 63.943 63.689 4 3.7811E-55 21198 20211116_3429_TMUAki_TMT10x_P_F2 227.95 206.71 37729000 63957000 340250 60326000 44707000 58778000 44176000 42905000 40423000 38442000 48677000 35131000 59665000 3422100 61775000 42867000 59618000 44721000 44291000 41580000 37728000 46701000 10 10 8 10 10 10 10 10 10 10 10 23292000 38415000 258470 36871000 22875000 42463000 27224000 25778000 24183000 23047000 28942000 21688000 35840000 2045300 37807000 22050000 42538000 27293000 26970000 24904000 22621000 27772000 6 6 4 6 6 6 6 6 6 6 6 14437000 25542000 81788 23454000 21833000 16315000 16952000 17127000 16239000 15395000 19735000 13443000 23825000 1376800 23968000 20816000 17079000 17428000 17321000 16676000 15107000 18929000 4 4 4 4 4 4 4 4 4 4 4 6727800000 3103200000 3624600000 16436 1701 15091 83866;83867;83868;83869;83870;83871 101443;101444;101445;101446;101447;101448;101449;101450;101451;101452 101445 10 RSEDEPPAASASAAPPPQRDEEEPDGVPEK Unmodified 3157.4436 0.44359372 2502 Q96IZ0 PAWR PRKC apoptosis WT1 regulator protein yes yes 0 0 0 2 By MS/MS By matching 2 0.707 1 2 1 3 1 34.602 34.431 4;5 3.3293E-57 7741 20211116_3428_TMUAki_TMT10x_P_F1 214 196.78 799450 1196000 19898 2173700 4241300 3365800 1723300 1241900 1696500 804460 1564700 744490 1119700 129580 2166300 4004400 3307600 1878800 1356800 1722400 803700 1513500 4 4 3 4 4 4 4 4 4 4 4 799450 1196000 19898 2173700 4241300 3365800 1723300 1241900 1696500 804460 1564700 744490 1119700 129580 2166300 4004400 3307600 1878800 1356800 1722400 803700 1513500 4 4 3 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 380150000 340360000 39786000 16437 2502 15092 83872;83873;83874;83875 101453;101454;101455;101456 101453 4 RSEEEEAPPDGAVAEYR Unmodified 1903.8548 0.85479891 2025 Q6UX04;Q6UX04-2 CWC27 Peptidyl-prolyl cis-trans isomerase CWC27 homolog yes no 0 0 0 1 By MS/MS By matching 1 0 2 1 1 32.452 32.467 3 6.9094E-12 6962 20211116_3428_TMUAki_TMT10x_P_F1 139.9 108.08 72630 96347 3390.6 137820 190040 164380 74247 64222 80765 63322 117570 67651 90057 10826 138060 179520 163570 81569 70324 83186 61881 112280 1 1 1 1 1 1 1 1 1 1 1 72630 96347 3390.6 137820 190040 164380 74247 64222 80765 63322 117570 67651 90057 10826 138060 179520 163570 81569 70324 83186 61881 112280 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27093000 20786000 6307000 16438 2025 15093 83876;83877 101457 101457 1 RSEEEEAPPDGAVAEYRR Unmodified 2059.9559 0.95590994 2025 Q6UX04;Q6UX04-2 CWC27 Peptidyl-prolyl cis-trans isomerase CWC27 homolog yes no 0 0 0 2 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 29.988 29.933 4 7.5375E-31 7481 20211116_3429_TMUAki_TMT10x_P_F2 181.32 166.71 200750 314110 1013.1 354740 460740 336940 254960 200120 236970 171880 298420 186910 293250 19128 358760 436530 341280 268820 209530 244040 169030 285980 3 3 1 3 3 3 3 3 3 3 3 138440 218100 1013.1 253050 401120 283960 187740 134150 159650 120310 198770 128900 203640 14714 256150 379220 284000 200720 143540 165030 118070 190530 2 2 1 2 2 2 2 2 2 2 2 62311 96009 0 101690 59613 52985 67224 65973 77319 51575 99658 58012 89608 4413.7 102610 57305 57273 68103 65991 79010 50964 95445 1 1 0 1 1 1 1 1 1 1 1 49364000 39287000 10076000 16439 2025 15094 83878;83879;83880 101458;101459;101460 101459 3 RSEIIQITTGSK Unmodified 1331.7409 0.74087877 1531 Q06609;Q06609-3 RAD51 DNA repair protein RAD51 homolog 1 yes no 0 0 0 1 By MS/MS 8 0 1 1 41.584 41.722 3 8.0853E-08 10189 20211116_3447_TMUAki_TMT10x_S_F8 107.65 83.804 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16440 1531 15095 83881 101461 101461 1 RSELEEQQMHLNVGLR Oxidation (M) 1953.9691 0.96905758 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 1 1 By MS/MS 4 0 1 1 34.947 34.971 4 1.1536E-10 8321 20211116_3431_TMUAki_TMT10x_P_F4 129.29 110.88 968550 1561100 1461.2 1587600 2085000 2146000 1189200 1127600 1259800 1014700 1411100 901760 1456800 89927 1626100 1976300 2128800 1255300 1194500 1283900 995630 1356600 2 2 1 2 2 2 2 2 2 2 2 968550 1561100 1461.2 1587600 2085000 2146000 1189200 1127600 1259800 1014700 1411100 901760 1456800 89927 1626100 1976300 2128800 1255300 1194500 1283900 995630 1356600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 148770000 148770000 0 16441 1695 15096 83882 101462;101463 101463 2283 2 RSELIAK Unmodified 815.4865 0.48650199 1478 Q01105;Q01105-2;Q01105-3;Q01105-4;P0DME0 SET;SETSIP Protein SET;Protein SETSIP yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 31.622 31.605 3 0.0036046 7320 20211116_3433_TMUAki_TMT10x_P_F5 103.83 23.735 1894700 2973500 21016 2907100 2534400 2769400 1901500 1275500 1453900 1290100 2061500 1764300 2774400 185630 2968400 2415500 2796200 1948000 1372700 1520200 1259400 1969800 2 2 2 2 2 2 2 2 2 2 2 1894700 2973500 21016 2907100 2534400 2769400 1901500 1275500 1453900 1290100 2061500 1764300 2774400 185630 2968400 2415500 2796200 1948000 1372700 1520200 1259400 1969800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 172360000 172360000 0 16442 1478 15097 83883;83884 101464;101465 101465 2 RSELVNWYLK Unmodified 1306.7034 0.70337105 1716 Q14566 MCM6 DNA replication licensing factor MCM6 yes yes 0 0 0 1 By MS/MS 2 0 1 1 55.84 55.634 3 4.2155E-09 16611 20211116_3440_TMUAki_TMT10x_S_F2 133.89 101.29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16443 1716 15098 83885 101466 101466 1 RSENEEFVEVGR Unmodified 1449.6848 0.68482046 611 P10644;P10644-2 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed yes no 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 32.699 32.59 3 1.6489E-16 8970 20211116_3439_TMUAki_TMT10x_S_F1 199.31 163.02 973680 1513400 4403.8 1673000 1761300 1692000 1087700 988950 1242200 945330 1344200 906530 1412800 83785 1695800 1671300 1706700 1143300 1039700 1260600 925050 1293500 3 3 1 3 3 3 3 3 3 3 3 683200 1097200 4403.8 1180600 1475300 1455000 833720 692470 888610 687110 956240 636100 1024100 64582 1202600 1398300 1448200 880920 742380 904010 671290 920360 2 2 1 2 2 2 2 2 2 2 2 290480 416250 0 492430 285950 237000 253940 296480 353580 258220 387910 270430 388690 19203 493160 273070 258530 262340 297300 356560 253760 373140 1 1 0 1 1 1 1 1 1 1 1 124980000 95970000 29009000 16444 611 15099 83886;83887;83888;83889 101467;101468;101469 101469 3 RSFEVEEVETPNSTPPR Unmodified 1972.949 0.94903365 3118 Q9UHD8-5;Q9UHD8;Q9UHD8-2;Q9UHD8-7 SEPT9 Septin-9 yes no 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 38.834 38.689 3 4.1619E-36 9510 20211116_3440_TMUAki_TMT10x_S_F2 212.32 191.93 2626100 4635300 18948 6196700 4925400 5102000 3205300 3639400 4222000 3539300 4276100 2444900 4331000 218420 6195000 4677500 5232200 3372700 3771100 4252600 3460800 4123300 8 8 5 8 8 8 8 8 8 8 8 1324300 2412400 6498.8 3268400 3929000 4088400 2341000 1901800 2245600 1917800 2364800 1232800 2254200 107520 3286100 3724800 4065200 2454600 2044400 2292900 1872300 2277500 2 2 1 2 2 2 2 2 2 2 2 1301800 2222900 12450 2928400 996490 1013600 864370 1737700 1976400 1621500 1911300 1212100 2076800 110910 2909000 952630 1167000 918100 1726700 1959700 1588500 1845800 6 6 4 6 6 6 6 6 6 6 6 318980000 91667000 227310000 16445 3118 15100 83890;83891;83892 101470;101471;101472;101473;101474;101475;101476;101477 101474 8 RSFEVEEVETPNSTPPRR Unmodified 2129.0501 0.050144675 3118 Q9UHD8-5;Q9UHD8;Q9UHD8-2;Q9UHD8-7 SEPT9 Septin-9 yes no 0 0 0 2 By MS/MS 4.5 0.5 1 1 2 33.753 33.738 4 0.020212 7903 20211116_3431_TMUAki_TMT10x_P_F4 48.51 37.24 2080200 2830400 12927 3500300 3641900 3054000 2121200 1296700 1298200 1301200 2009200 1937000 2643600 206380 3516900 3454500 3099200 2205700 1407200 1381900 1270600 1916200 2 2 2 2 2 2 2 2 2 2 2 2080200 2830400 12927 3500300 3641900 3054000 2121200 1296700 1298200 1301200 2009200 1937000 2643600 206380 3516900 3454500 3099200 2205700 1407200 1381900 1270600 1916200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 122770000 122770000 0 16446 3118 15101 83893;83894 101478;101479 101478 2 RSGAELALDYLCR Unmodified 1522.7562 0.75621126 2636 Q9BRJ6 C7orf50 Uncharacterized protein C7orf50 yes yes 0 0 0 1 By MS/MS 7 0 1 1 54.121 54.642 3 1.2273E-05 17712 20211116_3446_TMUAki_TMT10x_S_F7 87.519 63.137 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16447 2636 15102 83895 101480 101480 1 RSGASAAPAASAAAALAPSATR Unmodified 1925.0079 0.00788593 2098 Q7Z7K6-3 CENPV Centromere protein V yes yes 0 0 0 1 By MS/MS By MS/MS 2.75 0.829 2 1 1 2 2 32.3 32.163 3 1.43E-15 9977 20211116_3429_TMUAki_TMT10x_P_F2 140.59 121.01 2927500 4560300 17163 6222800 3437600 2741700 2831500 3701800 4321900 3324200 4202800 2725700 4261500 200340 6178800 3280300 3029400 2949900 3703900 4327300 3262200 4058000 4 4 1 4 4 4 4 4 4 4 4 331810 282480 0 866210 1211200 698860 509640 316410 523360 300240 243940 308950 265770 0 839950 1143700 713680 554060 340520 521920 293900 243970 1 1 0 1 1 1 1 1 1 1 1 2595600 4277900 17163 5356500 2226500 2042900 2321800 3385300 3798500 3024000 3958900 2416700 3995700 200340 5338800 2136600 2315700 2395800 3363400 3805400 2968300 3814100 3 3 1 3 3 3 3 3 3 3 3 1695400000 796790000 898570000 16448 2098 15103 83896;83897;83898;83899 101481;101482;101483;101484;101485 101481 5 RSGPTDDGEEEMEEDTVTNGS Oxidation (M) 2269.8765 0.87645815 584 P09661 SNRPA1 U2 small nuclear ribonucleoprotein A' yes yes 0 0 1 1 By MS/MS 1 0 1 1 32.298 32.298 3 3.7864E-10 6928 20211116_3428_TMUAki_TMT10x_P_F1 104.84 102.02 32129 46924 0 73068 142600 83888 51969 29561 49520 26983 56148 29899 43883 2264.4 72856 134330 83572 57377 32720 50720 26459 53959 1 1 0 1 1 1 1 1 1 1 1 32129 46924 0 73068 142600 83888 51969 29561 49520 26983 56148 29899 43883 2264.4 72856 134330 83572 57377 32720 50720 26459 53959 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20377000 20377000 0 16449 584 15104 83900 101486 101486 553 1 RSIFASPESVTGK Unmodified 1377.7252 0.72522871 371 O75940 SMNDC1 Survival of motor neuron-related-splicing factor 30 yes yes 0 0 0 1 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 44.113 44.195 3 3.4367E-23 11633 20211116_3428_TMUAki_TMT10x_P_F1 214.45 144.73 7246900 11299000 34896 14494000 16065000 14408000 9075900 9656800 11505000 8910400 11355000 6747800 10555000 749290 14559000 15230000 14577000 9646800 10036000 11593000 8733100 10958000 5 5 4 5 5 5 5 5 5 5 5 5068700 7531800 4340.6 9641700 14407000 12835000 7552700 6570500 7669400 6109000 7631100 4719400 7035900 547500 9734900 13641000 12738000 8023000 6982800 7795800 5985400 7362600 3 3 2 3 3 3 3 3 3 3 3 2178200 3767500 30555 4852300 1658400 1572900 1523200 3086300 3835900 2801400 3723500 2028400 3519500 201790 4824500 1588600 1838700 1623700 3053100 3797200 2747700 3595400 2 2 2 2 2 2 2 2 2 2 2 1126500000 867570000 258920000 16450 371 15105 83901;83902;83903;83904;83905;83906 101487;101488;101489;101490;101491;101492 101487 6 RSIQFVDWCPTGFK Unmodified 1739.8454 0.84536062 1417 P68363;P68363-2;P68366;P68366-2 TUBA1B;TUBA4A Tubulin alpha-1B chain;Tubulin alpha-4A chain yes no 0 0 0 1 By MS/MS By MS/MS 2.73 0.854 1 5 6 3 8 7 64.558 64.297 2;3;4 2.7986E-59 22992 20211116_3441_TMUAki_TMT10x_S_F3 305.11 279.68 271370000 427870000 1392000 548120000 326050000 254110000 308820000 131370000 115690000 152290000 293200000 252670000 399700000 22581000 546290000 312150000 274250000 308170000 140390000 132440000 147880000 277350000 16 16 8 16 16 16 16 16 16 16 16 129050000 186860000 396380 233550000 149660000 166980000 160680000 63047000 57214000 73924000 133630000 120150000 174530000 9461800 233960000 143680000 171870000 159200000 69672000 65445000 71750000 126550000 9 9 3 9 9 9 9 9 9 9 9 142320000 241020000 995640 314580000 176390000 87135000 148140000 68328000 58476000 78370000 159570000 132520000 225170000 13119000 312320000 168470000 102370000 148960000 70721000 67000000 76127000 150800000 7 7 5 7 7 7 7 7 7 7 7 46012000000 24883000000 21129000000 16451 1417 15106 83907;83908;83909;83910;83911;83912;83913;83914;83915;83916;83917;83918;83919;83920;83921 101493;101494;101495;101496;101497;101498;101499;101500;101501;101502;101503;101504;101505;101506;101507;101508;101509 101506 17 RSLEQNIQLPAALLSR Unmodified 1808.0268 0.026830458 913 P33993;P33993-3 MCM7 DNA replication licensing factor MCM7 yes no 0 0 0 1 By MS/MS 2 0 1 1 61.34 61.103 3 0.00015424 18852 20211116_3440_TMUAki_TMT10x_S_F2 77.478 61.224 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16452 913 15107 83922 101510 101510 1 RSLGYAYVNFQQPADAER Unmodified 2084.0076 0.007551579 634;1619 P11940;P11940-2;Q13310;Q13310-2;Q13310-3 PABPC1;PABPC4 Polyadenylate-binding protein 1;Polyadenylate-binding protein 4 no no 0 0 0 1 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 47.681 47.905 3 5.1087E-31 14980 20211116_3446_TMUAki_TMT10x_S_F7 181.94 165.28 7024000 12099000 24849 12275000 9486700 11410000 7690900 13057000 12127000 10463000 10459000 6539700 11290000 517760 12497000 9048700 11714000 8032500 13115000 12084000 10326000 10141000 9 9 3 9 9 9 9 9 9 9 9 3119400 5169900 2804.4 5509900 5060500 7784700 4168300 5607800 5269800 4576700 4575300 2904400 4825300 212830 5631000 4829000 7741300 4308800 5780600 5288300 4512300 4435100 4 4 1 4 4 4 4 4 4 4 4 3904600 6929300 22045 6765200 4426200 3625000 3522600 7449400 6857000 5886400 5883300 3635400 6465100 304940 6866200 4219600 3972600 3723600 7334200 6795300 5813400 5705500 5 5 2 5 5 5 5 5 5 5 5 4604200000 2182200000 2422000000 16453 634;1619 15108 83923;83924;83925;83926;83927;83928 101511;101512;101513;101514;101515;101516;101517;101518;101519 101517 9 RSLRPDPNFDALISK Unmodified 1727.9319 0.93186744 2577;1530 Q06587;Q06587-2;Q99496 RING1;RNF2 E3 ubiquitin-protein ligase RING1;E3 ubiquitin-protein ligase RING2 no no 0 0 0 2 By MS/MS By matching 1.5 0.5 1 1 1 1 50.482 50.407 4 0.00023173 14203 20211116_3428_TMUAki_TMT10x_P_F1 82.259 55.824 2145000 2960700 24357 3698800 3089400 3740200 2244700 1810100 2141400 1666600 2542600 1997400 2765400 213760 3721900 2942500 3764300 2317800 1933500 2197200 1633600 2440300 1 1 1 1 1 1 1 1 1 1 1 2145000 2960700 24357 3698800 3089400 3740200 2244700 1810100 2141400 1666600 2542600 1997400 2765400 213760 3721900 2942500 3764300 2317800 1933500 2197200 1633600 2440300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 826650000 522690000 303960000 16454 1530;2577 15109 83929;83930 101520 101520 1 RSMGGAAIAPPTSLVEK Oxidation (M) 1699.8927 0.89270474 2495 Q96I25 RBM17 Splicing factor 45 yes yes 0 0 1 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 42.925 43.151 3 0.00041201 10805 20211116_3447_TMUAki_TMT10x_S_F8 64.983 44.03 1042100 1733500 1650.5 2166000 1750800 1673000 1000800 1324100 1764100 1192900 1557300 970320 1619100 93901 2171800 1659700 1726900 1078000 1360000 1753900 1170400 1508600 2 2 1 2 2 2 2 2 2 2 2 551870 865030 1650.5 1058900 1386100 1294800 703100 632850 903190 566010 721470 513860 807890 58976 1070100 1312000 1289600 755090 674850 903640 555550 701600 1 1 1 1 1 1 1 1 1 1 1 490270 868430 0 1107100 364610 378170 297690 691290 860900 626840 835800 456460 811230 34925 1101600 347670 437250 322890 685130 850280 614860 807040 1 1 0 1 1 1 1 1 1 1 1 251130000 197340000 53783000 16455 2495 15110 83931;83932;83933 101521;101522 101522 2779 2 RSPPIPLAK Unmodified 977.6022 0.60220045 654 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 1 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 37.079 36.982 3 3.881E-05 11868 20211116_3441_TMUAki_TMT10x_S_F3 144.47 104.12 4430200 7036300 29888 7124400 6059200 5377500 4814900 3889200 4192300 3995000 5415100 4125000 6565900 396400 7235700 5779000 5552500 4929800 4032600 4335500 3897400 5185900 6 6 4 6 6 6 6 6 6 6 6 1948100 3060400 14001 3171800 3399500 3205200 2107900 1818800 1946200 1794000 2370100 1813900 2856100 185650 3228400 3227400 3232000 2200700 1918400 2002000 1753100 2273200 2 2 1 2 2 2 2 2 2 2 2 2482100 3975900 15887 3952600 2659700 2172300 2707100 2070500 2246100 2201000 3045000 2311100 3709800 210740 4007300 2551600 2320500 2729100 2114200 2333500 2144300 2912700 4 4 3 4 4 4 4 4 4 4 4 902110000 524910000 377200000 16456 654 15111 83934;83935;83936;83937;83938 101523;101524;101525;101526;101527;101528 101528 6 RSSGAAPAPASASAPAPVPGGEAER Unmodified 2260.1196 0.11962122 3081 Q9UBP0;Q9UBP0-4;Q9UBP0-3;Q9UBP0-2 SPAST Spastin yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 31.253 31.238 3 1.5339E-22 6900 20211116_3431_TMUAki_TMT10x_P_F4 146.2 136.92 49042 50533 0 89236 119990 94407 48411 54334 66882 42061 56426 45637 47298 1849.3 88379 113050 94956 53420 56898 66861 41585 54756 1 1 0 1 1 1 1 1 1 1 1 49042 50533 0 89236 119990 94407 48411 54334 66882 42061 56426 45637 47298 1849.3 88379 113050 94956 53420 56898 66861 41585 54756 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35222000 35222000 0 16457 3081 15112 83939;83940 101529 101529 1 RSSPAAFINPPIGTVTPALK Unmodified 2036.1419 0.14186022 2725 Q9BY77;Q9BY77-2 POLDIP3 Polymerase delta-interacting protein 3 yes no 0 0 0 1 By MS/MS By MS/MS 4.25 0.433 3 1 1 3 61.272 61.261 3;4 7.8199E-13 19419 20211116_3442_TMUAki_TMT10x_S_F4 130.36 112.44 11865000 19829000 164310 20514000 13512000 15260000 12757000 11532000 11173000 11650000 15124000 11049000 18506000 1159900 20801000 12947000 15787000 12930000 11916000 11576000 11373000 14468000 5 5 5 5 5 5 5 5 5 5 5 4444500 7120600 67256 7547400 5368200 8607000 5325300 4193500 3829100 4130000 5846300 4138800 6645900 444100 7685300 5150300 8603700 5357600 4484500 4032500 4036200 5577200 1 1 1 1 1 1 1 1 1 1 1 7420300 12709000 97054 12967000 8143700 6653400 7431200 7338000 7344000 7520000 9278000 6909800 11860000 715780 13116000 7796500 7182900 7572300 7431700 7543700 7337000 8890300 4 4 4 4 4 4 4 4 4 4 4 1981100000 510630000 1470500000 16458 2725 15113 83941;83942;83943;83944 101530;101531;101532;101533;101534 101531 5 RSTAPSAAASASASAAASSPAGGGAEALELLEHCGVCR Unmodified 3597.69 0.69000555 1615 Q13263;Q13263-2 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 1 By MS/MS By MS/MS 6.5 1.12 2 2 2 2 4 4 58.274 58.501 4 1.3971E-61 17263 20211116_3445_TMUAki_TMT10x_S_F6 201.75 192.17 23123000 39032000 401690 38492000 30844000 39274000 26523000 29245000 28884000 29582000 31186000 21531000 36419000 1539500 39318000 29482000 39736000 27202000 30251000 29363000 28877000 30012000 13 13 5 13 13 13 13 13 13 13 13 11245000 18653000 211140 18851000 15383000 26247000 14868000 14631000 14302000 14063000 14970000 10471000 17406000 856370 19328000 14746000 26021000 15090000 15445000 14598000 13758000 14420000 7 7 3 7 7 7 7 7 7 7 7 11878000 20379000 190550 19641000 15460000 13027000 11655000 14614000 14582000 15519000 16216000 11060000 19013000 683090 19990000 14736000 13715000 12112000 14806000 14764000 15119000 15592000 6 6 2 6 6 6 6 6 6 6 6 23752000000 10784000000 12968000000 16459 1615 15114 83945;83946;83947;83948;83949;83950;83951;83952 101535;101536;101537;101538;101539;101540;101541;101542;101543;101544;101545;101546;101547 101544 13 RSTITSR Unmodified 819.45626 0.45626449 290;528;2613;2191 Q93079;Q99877;P62807;P58876;O60814;Q5QNW6;Q99879;Q5QNW6-2;P57053;P33778;Q16778;P23527;P06899;Q6DRA6;Q6DN03;Q8N257;Q99880 HIST1H2BH;HIST1H2BN;HIST1H2BC;HIST1H2BD;HIST1H2BK;HIST2H2BF;HIST1H2BM;H2BFS;HIST1H2BB;HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST2H2BD;HIST2H2BC;HIST3H2BB;HIST1H2BL Histone H2B type 1-H;Histone H2B type 1-N;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type 2-F;Histone H2B type 1-M;Histone H2B type F-S;Histone H2B type 1-B;Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 3-B;Histone H2B type 1-L no no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 23.716 23.7 2 0.04801 5077 20211116_3429_TMUAki_TMT10x_P_F2 118.89 29.991 1461000 2375400 1009.2 2007800 1409700 1707700 1484900 876580 1174100 1096400 1571600 1360100 2215100 99392 2069700 1352200 1739500 1492600 939770 1222100 1061700 1503800 4 4 1 4 4 4 4 4 4 4 4 824860 1325300 0 1122600 751270 1122600 797490 407270 623830 564650 854400 767910 1235800 52985 1159600 720580 1127500 801130 454890 650420 544980 817070 2 2 0 2 2 2 2 2 2 2 2 636120 1050100 1009.2 885130 658390 585100 687420 469310 550230 531750 717210 592230 979240 46407 910150 631590 611960 691510 484880 571690 516760 686690 2 2 1 2 2 2 2 2 2 2 2 260360000 102650000 157710000 16460 290;528;2191;2613 15115 83953;83954;83955;83956 101548;101549 101548 2 RSTMVGTPYWMAPEVVTR Oxidation (M) 2096.0183 0.018315961 1606;1602 Q13177;O75914;O75914-3;O75914-2;O75914-4;Q13153;Q13153-2 PAK2;PAK3;PAK1 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34;Serine/threonine-protein kinase PAK 3;Serine/threonine-protein kinase PAK 1 no no 0 0 1 1 By MS/MS By MS/MS 2 0 2 1 1 52.378 52.167 3 6.8457E-05 15186 20211116_3440_TMUAki_TMT10x_S_F2 77.137 66.669 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16461 1606;1602 15116 83957;83958 101550;101551 101551 2154;2155 2 RSTMVGTPYWMAPEVVTRK 2 Oxidation (M) 2240.1082 0.1081936 1606;1602 Q13177;O75914;O75914-3;O75914-2;O75914-4;Q13153;Q13153-2 PAK2;PAK3;PAK1 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34;Serine/threonine-protein kinase PAK 3;Serine/threonine-protein kinase PAK 1 no no 0 0 2 2 By MS/MS By matching 3 0 2 1 1 44.83 44.677 4 0.00017132 13731 20211116_3430_TMUAki_TMT10x_P_F3 71.136 55.544 562400 763050 0 896370 999590 1187500 712330 499630 554180 515080 686390 523600 712510 46911 909380 950850 1176300 732670 543170 575400 502410 658050 1 1 0 1 1 1 1 1 1 1 1 562400 763050 0 896370 999590 1187500 712330 499630 554180 515080 686390 523600 712510 46911 909380 950850 1176300 732670 543170 575400 502410 658050 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 222130000 152510000 69625000 16462 1606;1602 15117 83959;83960 101552 101552 2154;2155 1 RSVGELPSTVESLQK Unmodified 1628.8733 0.87334951 1536 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 46.715 46.839 3 3.0689E-15 12497 20211116_3445_TMUAki_TMT10x_S_F6 159.34 124.66 7447300 12445000 89420 15895000 15814000 13797000 9159000 8477900 10444000 8695600 11318000 6934800 11625000 817950 15941000 15002000 14065000 9678100 8894600 10600000 8483600 10891000 3 3 3 3 3 3 3 3 3 3 3 4687500 7684300 47940 9842800 14078000 11932000 7123000 5650500 6598500 5438400 6893600 4364900 7178400 564830 9920100 13327000 11885000 7572600 6055700 6746300 5320200 6640900 2 2 2 2 2 2 2 2 2 2 2 2759800 4760600 41480 6052400 1736300 1864900 2035900 2827400 3845600 3257200 4424600 2569900 4446900 253130 6020600 1674900 2179700 2105500 2839000 3853600 3163400 4250400 1 1 1 1 1 1 1 1 1 1 1 913830000 622240000 291580000 16463 1536 15118 83961;83962 101553;101554;101555 101555 3 RSVLDAAQIVGLNCLR Unmodified 1783.9727 0.9726864 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 1 By MS/MS 4 0 1 1 65.041 64.875 3 2.429E-10 21001 20211116_3442_TMUAki_TMT10x_S_F4 121.92 107.76 2231700 4133100 137210 3767000 2725300 3034500 2968500 2853000 2778800 3048700 3509800 2079000 3855200 319820 3857900 2627500 3132400 2992500 2915700 2861200 2969400 3363200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2231700 4133100 137210 3767000 2725300 3034500 2968500 2853000 2778800 3048700 3509800 2079000 3855200 319820 3857900 2627500 3132400 2992500 2915700 2861200 2969400 3363200 1 1 1 1 1 1 1 1 1 1 1 492720000 0 492720000 16464 2345 15119 83963 101556 101556 1 RSVMDATQIAGLNCLR Oxidation (M) 1819.9033 0.9032862 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 1 1 By MS/MS 1 0 1 1 46.879 46.647 3 3.3413E-05 14751 20211116_3439_TMUAki_TMT10x_S_F1 85.576 66.744 417240 700610 21662 798360 412720 342600 336340 575020 634010 480480 583430 388650 654110 54717 800740 395130 382350 354370 570080 630170 473160 564380 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 417240 700610 21662 798360 412720 342600 336340 575020 634010 480480 583430 388650 654110 54717 800740 395130 382350 354370 570080 630170 473160 564380 1 1 1 1 1 1 1 1 1 1 1 37195000 0 37195000 16465 916 15120 83964 101557 101557 1157 1 RSVYIDAR Unmodified 978.52468 0.52467841 2294 Q8WU90 ZC3H15 Zinc finger CCCH domain-containing protein 15 yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 28.901 28.888 3 0.00205 6254 20211116_3433_TMUAki_TMT10x_P_F5 87.806 59.794 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16466 2294 15121 83965;83966 101558;101559 101559 2 RSYDVPPPPMEPDHPFYSNISK Oxidation (M) 2588.2006 0.20057366 722 P18669;Q8N0Y7 PGAM1;PGAM4 Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4 yes no 0 0 1 1 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 47.743 48.022 4 1.0107E-19 15036 20211116_3446_TMUAki_TMT10x_S_F7 151.3 136.99 35952000 59688000 212480 68337000 61892000 67518000 42823000 50399000 52630000 47139000 54041000 33475000 55728000 2928000 69092000 58862000 68448000 44738000 52009000 53163000 46172000 52087000 11 11 6 11 11 11 11 11 11 11 11 21042000 33903000 96110 39725000 47680000 54062000 31415000 28514000 29888000 26492000 29198000 19592000 31657000 2028400 40329000 45303000 53616000 32668000 30220000 30448000 25957000 28188000 7 7 4 7 7 7 7 7 7 7 7 14910000 25785000 116370 28612000 14212000 13456000 11409000 21885000 22742000 20647000 24842000 13883000 24071000 899590 28763000 13559000 14832000 12070000 21788000 22715000 20216000 23900000 4 4 2 4 4 4 4 4 4 4 4 7621900000 5027900000 2594000000 16467 722 15122 83967;83968;83969;83970;83971;83972 101560;101561;101562;101563;101564;101565;101566;101567;101568;101569;101570 101570 830 11 RSYDVPPPPMEPDHPFYSNISK Unmodified 2572.2057 0.20565904 722 P18669;Q8N0Y7 PGAM1;PGAM4 Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4 yes no 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 52.075 52.673 4 1.9909E-10 16964 20211116_3446_TMUAki_TMT10x_S_F7 107.08 94.651 13989000 23126000 219160 27545000 17046000 16736000 15749000 9084800 8542700 9810000 15284000 13026000 21596000 1309600 27626000 16318000 17544000 15820000 9644600 9245300 9551100 14535000 4 4 2 4 4 4 4 4 4 4 4 7705100 12849000 190340 15023000 10522000 12817000 10384000 4659900 4529200 5519200 8359200 7175300 11998000 814720 15139000 10094000 13010000 10359000 5175200 4999800 5355000 7945200 2 2 1 2 2 2 2 2 2 2 2 6284100 10277000 28818 12522000 6523600 3919100 5364500 4424900 4013500 4290800 6924500 5850900 9597900 494910 12487000 6224100 4534600 5460300 4469400 4245400 4196100 6589700 2 2 1 2 2 2 2 2 2 2 2 1738800000 798590000 940230000 16468 722 15122 83973;83974 101571;101572;101573;101574 101573 4 RSYQFWDTQPVPK Unmodified 1650.8154 0.8154407 872 P30419;P30419-2 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 yes no 0 0 0 1 By MS/MS By MS/MS 4 3.29 2 1 2 2 3 51.273 51.187 3 0.0022113 14625 20211116_3436_TMUAki_TMT10x_P_F8 69.352 43.841 31062000 49260000 251180 60313000 37750000 35693000 32497000 25794000 28799000 26720000 37133000 28923000 46006000 2812400 60380000 36074000 37658000 33124000 26752000 29756000 26058000 35563000 7 7 5 7 7 7 7 7 7 7 7 14107000 21457000 114580 26953000 24494000 24326000 18142000 11130000 12738000 11191000 16787000 13135000 20042000 1351100 27069000 23329000 24647000 18567000 11984000 13339000 10927000 16068000 3 3 2 3 3 3 3 3 3 3 3 16956000 27802000 136590 33359000 13256000 11367000 14355000 14664000 16061000 15530000 20346000 15788000 25963000 1461200 33311000 12745000 13010000 14557000 14769000 16417000 15131000 19495000 4 4 3 4 4 4 4 4 4 4 4 1542600000 915400000 627240000 16469 872 15123 83975;83976;83977;83978;83979 101575;101576;101577;101578;101579;101580 101576 6 RTALVANTSNMPVAAR Oxidation (M) 1686.8835 0.88353704 971 P38606;P38606-2 ATP6V1A V-type proton ATPase catalytic subunit A yes no 0 0 1 1 By MS/MS By MS/MS 1 0 2 1 1 30.274 30.307 3 0.0035888 8087 20211116_3439_TMUAki_TMT10x_S_F1 59.421 43.537 200030 384070 18010 412450 522520 368070 326690 267710 298730 209940 358850 186380 358490 37886 418100 497190 375450 340750 275530 307270 207410 344310 2 2 2 2 2 2 2 2 2 2 2 122920 241030 12546 233750 445010 294160 223920 167770 198280 118050 235730 114540 224880 26394 239880 421900 293110 237900 175460 204170 117340 226240 1 1 1 1 1 1 1 1 1 1 1 77113 143050 5465 178700 77512 73908 102770 99945 100450 91884 123130 71841 133610 11492 178220 75288 82342 102850 100060 103100 90070 118080 1 1 1 1 1 1 1 1 1 1 1 12468000 6960100 5508000 16470 971 15124 83980;83981 101581 101581 1229 1 RTAQEVETYR Unmodified 1251.6208 0.62076364 710 P17844;P17844-2 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 1 By matching By MS/MS 2 0.816 1 1 1 2 1 28.081 27.908 3 0.00090784 8245 20211116_3441_TMUAki_TMT10x_S_F3 87.216 64.637 71927 142700 8497.2 146770 97235 84815 101250 73777 77026 87388 101480 67034 133170 14237 148520 93849 89977 101740 75976 80288 84787 97133 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 71927 142700 8497.2 146770 97235 84815 101250 73777 77026 87388 101480 67034 133170 14237 148520 93849 89977 101740 75976 80288 84787 97133 1 1 1 1 1 1 1 1 1 1 1 6011100 4076500 1934500 16471 710 15125 83982;83983;83984 101582 101582 1 RTATVGGAMMGSTHIYDMSTVMSR 4 Oxidation (M) 2623.1499 0.14987677 1633 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 4 1 By MS/MS 2 0 1 1 30.803 30.576 4 2.9678E-05 7789 20211116_3429_TMUAki_TMT10x_P_F2 72.899 62.977 24573 42904 0 50264 70021 70900 45854 33997 51242 33047 38686 22879 40061 0 51066 66532 70127 47942 36400 51449 32314 37708 1 1 0 1 1 1 1 1 1 1 1 24573 42904 0 50264 70021 70900 45854 33997 51242 33047 38686 22879 40061 0 51066 66532 70127 47942 36400 51449 32314 37708 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19708000 19708000 0 16472 1633 15126 83985 101583 101583 2194;2195;2196;2197 1 RTDDIPVWDQEFLK Unmodified 1760.8733 0.87334951 1402 P63208;P63208-2 SKP1 S-phase kinase-associated protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 66.06 66.095 3 0.00016128 20089 20211116_3434_TMUAki_TMT10x_P_F6 79.652 60.074 24351000 39173000 27288 43492000 28641000 34721000 28441000 22312000 21417000 22470000 29137000 22673000 36569000 2016600 43932000 27453000 35633000 28642000 23316000 22369000 21939000 27868000 3 3 1 3 3 3 3 3 3 3 3 16748000 27027000 0 29021000 20830000 28714000 20624000 15853000 15471000 15544000 19833000 15594000 25227000 1358000 29461000 19962000 28982000 20771000 16758000 16120000 15194000 18997000 2 2 0 2 2 2 2 2 2 2 2 7602600 12146000 27288 14471000 7810700 6006500 7817000 6458300 5945400 6926500 9303900 7079000 11342000 658660 14472000 7491100 6651300 7870800 6557500 6249500 6745500 8871100 1 1 1 1 1 1 1 1 1 1 1 1380900000 861500000 519390000 16473 1402 15127 83986;83987;83988 101584;101585;101586;101587 101586 4 RTDIFGVEETAIGK Unmodified 1534.7991 0.79912193 1810 Q15459;Q15459-2 SF3A1 Splicing factor 3A subunit 1 yes no 0 0 0 1 By MS/MS By MS/MS 4.71 1.03 1 2 2 2 3 4 57.39 57.478 3 1.0171E-23 17676 20211116_3433_TMUAki_TMT10x_P_F5 192.65 146.3 59845000 104050000 587820 104530000 76844000 90096000 58415000 66994000 76097000 70695000 78164000 55725000 97092000 5624900 106390000 73246000 92155000 60764000 69391000 76715000 68892000 75338000 8 8 5 8 8 8 8 8 8 8 8 26473000 43695000 147000 43628000 43490000 58273000 30010000 27988000 31582000 29561000 32632000 24650000 40772000 2461800 44731000 41363000 57780000 31193000 30032000 32097000 28806000 31446000 3 3 1 3 3 3 3 3 3 3 3 33372000 60356000 440820 60900000 33354000 31823000 28406000 39005000 44515000 41134000 45532000 31075000 56320000 3163200 61655000 31883000 34374000 29571000 39359000 44618000 40086000 43891000 5 5 4 5 5 5 5 5 5 5 5 7257000000 3954800000 3302200000 16474 1810 15128 83989;83990;83991;83992;83993;83994;83995 101588;101589;101590;101591;101592;101593;101594;101595;101596 101589 9 RTDIFGVEETAIGKK Unmodified 1662.8941 0.89408495 1810 Q15459;Q15459-2 SF3A1 Splicing factor 3A subunit 1 yes no 0 0 0 2 By MS/MS 7 0 1 1 52.131 52.633 4 4.5013E-07 16897 20211116_3446_TMUAki_TMT10x_S_F7 119 99.788 7780200 12935000 98872 13923000 7872900 7328500 7889200 15419000 12018000 11024000 11710000 7244800 12073000 738470 14036000 7555300 8054400 8129300 15137000 12035000 10948000 11306000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7780200 12935000 98872 13923000 7872900 7328500 7889200 15419000 12018000 11024000 11710000 7244800 12073000 738470 14036000 7555300 8054400 8129300 15137000 12035000 10948000 11306000 1 1 1 1 1 1 1 1 1 1 1 512850000 0 512850000 16475 1810 15129 83996 101597 101597 1 RTDLCDHALHISHDEL Unmodified 1930.8956 0.89555829 3237 Q9Y2B0 CNPY2 Protein canopy homolog 2 yes yes 0 0 0 1 By MS/MS 5 0 1 1 36.736 36.898 5 0.03621 8315 20211116_3444_TMUAki_TMT10x_S_F5 39.143 26.998 325710 515340 0 529490 296870 245030 278880 448380 480360 385650 429240 303260 480920 26012 534910 284160 271740 290060 443740 478050 379230 415660 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 325710 515340 0 529490 296870 245030 278880 448380 480360 385650 429240 303260 480920 26012 534910 284160 271740 290060 443740 478050 379230 415660 1 1 0 1 1 1 1 1 1 1 1 14719000 0 14719000 16476 3237 15130 83997 101598 101598 1 RTDLTVLVAHNDDPTDQMFVFFPEEPK Oxidation (M) 3176.5125 0.51246533 732 P19388 POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1 yes yes 0 0 1 1 By MS/MS By MS/MS 4 0 2 1 1 74.617 74.58 4 1.0504E-17 24487 20211116_3431_TMUAki_TMT10x_P_F4 127.41 114.73 3137000 5918500 12511 5373800 3905300 6312600 4162400 4293500 4334800 4340800 5300800 2920900 5520600 271930 5534700 3751100 6327600 4214000 4468600 4436600 4237500 5083600 2 2 1 2 2 2 2 2 2 2 2 1661400 2969400 12511 2617500 1710900 3999400 1773300 2186800 2283300 2252900 2497700 1547000 2769400 150090 2715800 1642800 3948300 1811300 2316800 2308200 2197600 2402800 1 1 1 1 1 1 1 1 1 1 1 1475600 2949200 0 2756300 2194400 2313200 2389100 2106700 2051400 2087800 2803100 1373800 2751200 121840 2818900 2108300 2379200 2402700 2151800 2128400 2039900 2680800 1 1 0 1 1 1 1 1 1 1 1 1591400000 640070000 951280000 16477 732 15131 83998;83999 101599;101600 101599 840 2 RTDSQLQGQVLFR Unmodified 1546.8216 0.82158871 2950 Q9NU22 MDN1 Midasin yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 3 1 2 39.303 39.617 3 0.00036108 9270 20211116_3447_TMUAki_TMT10x_S_F8 78.615 51.956 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16478 2950 15132 84000;84001;84002 101601;101602;101603 101602 3 RTEEGPTLSYGR Unmodified 1364.6684 0.66844211 1026 P43243 MATR3 Matrin-3 yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 1.12 1 1 1 1 3 1 30.765 30.637 3 3.6621E-20 6616 20211116_3431_TMUAki_TMT10x_P_F4 234.82 167.66 1307200 2020700 12418 2151200 2981500 2432500 1558500 1415200 1638500 1190600 1878900 1217100 1886000 132740 2189500 2823100 2437900 1657700 1483500 1672000 1172000 1805100 5 5 2 5 5 5 5 5 5 5 5 1114500 1739800 10300 1818500 2778200 2254700 1363500 1200500 1376100 1016600 1573500 1037700 1623700 114630 1856100 2628300 2246400 1457500 1268300 1406400 1000500 1511800 4 4 1 4 4 4 4 4 4 4 4 192750 280900 2117.7 332710 203240 177810 194960 214700 262420 173930 305490 179490 262310 18101 333440 194790 191520 200280 215210 265540 171550 293360 1 1 1 1 1 1 1 1 1 1 1 416480000 332140000 84336000 16479 1026 15133 84003;84004;84005;84006 101604;101605;101606;101607;101608 101605 5 RTELFIAAEGIHTGQFVYCGK Unmodified 2396.1947 0.19470042 1384 P62917 RPL8 60S ribosomal protein L8 yes yes 0 0 0 1 By MS/MS By matching 8 0 2 1 1 61.14 61.236 4 2.1178E-26 18659 20211116_3436_TMUAki_TMT10x_P_F8 167.63 139.98 3997600 6936600 0 6113800 4808800 9944300 5846700 5463200 5104600 5104800 5627100 3722000 6469500 324190 6352500 4635800 9793600 5853300 5770100 5244100 5000300 5412100 1 1 0 1 1 1 1 1 1 1 1 3997600 6936600 0 6113800 4808800 9944300 5846700 5463200 5104600 5104800 5627100 3722000 6469500 324190 6352500 4635800 9793600 5853300 5770100 5244100 5000300 5412100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1812700000 1190600000 622060000 16480 1384 15134 84007;84008 101609 101609 1 RTELFIAAEGIHTGQFVYCGKK Unmodified 2524.2897 0.28966344 1384 P62917 RPL8 60S ribosomal protein L8 yes yes 0 0 0 2 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 57.589 57.261 5 4.0309E-10 20103 20211116_3441_TMUAki_TMT10x_S_F3 102.48 9.6882 11836000 19063000 89152 18620000 13580000 20801000 13352000 11661000 10628000 12307000 14498000 11021000 17787000 1003700 19059000 13015000 20851000 13471000 12337000 11069000 11993000 13866000 2 2 1 2 2 2 2 2 2 2 2 8278400 12424000 0 12229000 9474400 17279000 9708900 7404500 7019400 7948000 9858000 7707400 11592000 617990 12565000 9084900 17069000 9752600 8043000 7359500 7740100 9421800 1 1 0 1 1 1 1 1 1 1 1 3557700 6639400 89152 6391000 4105500 3522600 3643100 4256700 3609000 4359000 4639800 3313300 6194300 385720 6494500 3930300 3782000 3718400 4293900 3709600 4253000 4444000 1 1 1 1 1 1 1 1 1 1 1 3125300000 2291100000 834210000 16481 1384 15135 84009;84010 101610;101611 101611 2 RTELSIDISSK Unmodified 1247.6721 0.67213051 3118 Q9UHD8-5;Q9UHD8;Q9UHD8-2;Q9UHD8-7 SEPT9 Septin-9 yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 43.503 43.606 3 0.0047292 12107 20211116_3433_TMUAki_TMT10x_P_F5 65.809 32.584 6287800 9559100 163800 10385000 10650000 11854000 7769100 6416600 6548000 6355600 7591100 5855800 8922800 735050 10558000 10149000 11863000 7993300 6796500 6751900 6209700 7290600 1 1 1 1 1 1 1 1 1 1 1 6287800 9559100 163800 10385000 10650000 11854000 7769100 6416600 6548000 6355600 7591100 5855800 8922800 735050 10558000 10149000 11863000 7993300 6796500 6751900 6209700 7290600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 846930000 846930000 0 16482 3118 15136 84011;84012 101612;101613 101613 2 RTEQEEDEELLSESR Unmodified 1848.8337 0.83372912 844 P28370-2;P28370 SMARCA1 Probable global transcription activator SNF2L1 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 35.318 35.3 3 4.0938E-85 8071 20211116_3428_TMUAki_TMT10x_P_F1 335.91 296.91 461160 701470 7487.8 984540 733900 708650 455220 857170 1003100 605540 781320 429430 655600 47658 980280 697060 742280 493280 856490 988630 601760 760570 3 3 2 3 3 3 3 3 3 3 3 145890 206340 3066.8 299410 489930 506770 217390 278340 341750 188140 261650 135860 192890 19772 301970 463110 498340 238610 291830 339390 187460 254890 1 1 1 1 1 1 1 1 1 1 1 315270 495120 4420.9 685140 243970 201880 237830 578830 661340 417400 519660 293570 462710 27886 678310 233950 243950 254670 564660 649240 414300 505690 2 2 1 2 2 2 2 2 2 2 2 209520000 113460000 96064000 16483 844 15137 84013;84014 101614;101615;101616 101614 3 RTEQEEDEELLTESSK Unmodified 1921.8753 0.87525958 260 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 41.402 41.367 3 9.9631E-36 12571 20211116_3439_TMUAki_TMT10x_S_F1 211.57 187.03 1810300 2862800 57061 4631500 5969200 5081100 2871100 4472000 5534300 2623900 4096200 1686000 2677900 259070 4606700 5649000 5134900 3156700 4522200 5462600 2638800 3996000 3 3 2 3 3 3 3 3 3 3 3 983740 1442800 45865 2399600 5428900 4530900 2345600 2331700 2835100 1296900 2162400 916310 1349900 186560 2412300 5130700 4434900 2555700 2450700 2839000 1309200 2106800 1 1 1 1 1 1 1 1 1 1 1 826590 1420000 11196 2231900 540370 550180 525480 2140300 2699200 1327000 1933900 769700 1328100 72512 2194400 518280 699960 601090 2071500 2623700 1329500 1889200 2 2 1 2 2 2 2 2 2 2 2 678230000 494510000 183720000 16484 260 15138 84015;84016;84017;84018 101617;101618;101619;101620 101619 4 RTFPVLLR Unmodified 1000.6182 0.61818486 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 1 By MS/MS 5.5 0.5 1 1 2 42.305 42.47 3 0.00069755 10461 20211116_3444_TMUAki_TMT10x_S_F5 136.57 69.534 224510 321030 0 368160 185460 157470 158240 356320 334200 287830 338100 209020 299730 14890 369110 176940 177890 167380 350200 332430 283940 326030 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 224510 321030 0 368160 185460 157470 158240 356320 334200 287830 338100 209020 299730 14890 369110 176940 177890 167380 350200 332430 283940 326030 1 1 0 1 1 1 1 1 1 1 1 22392000 0 22392000 16485 1433 15139 84019;84020 101621;101622 101621 2 RTGAIVDVPVGEELLGR Unmodified 1779.9843 0.98429694 805 P25705;P25705-2 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 4 1.15 1 2 3 2 1 5 4 58.558 58.516 2;3 4.9201E-42 17883 20211116_3431_TMUAki_TMT10x_P_F4 233.28 205.11 48872000 78181000 333650 86861000 59730000 66938000 53078000 51559000 51392000 52107000 64650000 45503000 72983000 3890100 87701000 57084000 69075000 54134000 53214000 52826000 50868000 61955000 11 11 5 11 11 11 11 11 11 11 11 25692000 38976000 155920 44465000 36379000 48719000 31756000 26390000 27899000 28551000 36633000 23920000 36390000 1999800 45037000 34747000 48867000 32334000 28023000 28861000 27795000 35068000 6 6 3 6 6 6 6 6 6 6 6 23180000 39204000 177730 42396000 23351000 18219000 21321000 25169000 23493000 23556000 28017000 21583000 36594000 1890300 42664000 22337000 20208000 21800000 25191000 23965000 23073000 26887000 5 5 2 5 5 5 5 5 5 5 5 18871000000 9899100000 8972100000 16486 805 15140 84021;84022;84023;84024;84025;84026;84027;84028;84029 101623;101624;101625;101626;101627;101628;101629;101630;101631;101632;101633 101626 11 RTGQPMIHIYLDK Oxidation (M) 1586.8239 0.8238969 1489 Q01844;Q01844-6;Q01844-3;Q01844-5;Q01844-2 EWSR1 RNA-binding protein EWS yes no 0 0 1 1 By MS/MS By MS/MS 4.29 3.01 2 1 1 1 2 3 4 40.103 40.179 4 0.0011988 10083 20211116_3428_TMUAki_TMT10x_P_F1 73.887 46.749 9522300 14548000 80725 18521000 19334000 14620000 11057000 10394000 12988000 10196000 12765000 8866100 13590000 923570 18556000 18330000 15040000 11708000 10775000 13120000 9965900 12320000 9 9 5 9 9 9 9 9 9 9 9 6205900 9426000 74440 12534000 16132000 12323000 8266500 7073100 8644200 6750000 8267900 5778400 8807100 667530 12564000 15271000 12449000 8808000 7446800 8764200 6605700 7987400 5 5 4 5 5 5 5 5 5 5 5 3316300 5122100 6285.4 5987000 3202600 2297200 2790500 3320600 4343300 3445700 4496600 3087700 4782700 256040 5991500 3059400 2590800 2900200 3328300 4356000 3360100 4332900 4 4 1 4 4 4 4 4 4 4 4 954990000 545580000 409410000 16487 1489 15141 84030;84031;84032;84033;84034;84035;84036 101634;101635;101636;101637;101638;101639;101640;101641 101635 2024 8 RTGQPMIHIYLDK Unmodified 1570.829 0.82898227 1489 Q01844;Q01844-6;Q01844-3;Q01844-5;Q01844-2 EWSR1 RNA-binding protein EWS yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 44.551 44.424 4 0.00065492 11978 20211116_3440_TMUAki_TMT10x_S_F2 78.373 46.311 7060900 10706000 169710 14286000 10476000 8471100 7572600 5311200 5310800 5134300 8247200 6575700 10003000 791040 14235000 9982300 8917500 7763000 5554300 5606000 5021700 7864900 6 6 5 6 6 6 6 6 6 6 6 4367800 6496100 140560 8937200 7971300 6626300 5155300 3211200 3180900 3059900 4838600 4067900 6070700 543590 8910400 7580900 6816200 5315300 3432800 3381300 2994700 4616300 3 3 3 3 3 3 3 3 3 3 3 2693100 4209400 29144 5349100 2504900 1844800 2417300 2100000 2129900 2074400 3408700 2507800 3932100 247450 5324100 2401400 2101300 2447700 2121500 2224700 2027000 3248600 3 3 2 3 3 3 3 3 3 3 3 489650000 362010000 127640000 16488 1489 15141 84037;84038;84039;84040 101642;101643;101644;101645;101646;101647 101646 6 RTGYESGEYEMLGEGLGVK Oxidation (M) 2089.9626 0.9626348 1647 Q13561;Q13561-3;Q13561-2 DCTN2 Dynactin subunit 2 yes no 0 0 1 1 By MS/MS 4 0 1 1 50.977 51.139 3 6.752E-08 14847 20211116_3431_TMUAki_TMT10x_P_F4 104.03 88.084 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16489 1647 15142 84041 101648 101648 2216 1 RTIAQDYGVLK Unmodified 1262.6983 0.69828568 1533 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 1 By MS/MS By MS/MS 5.5 2.69 2 2 2 2 4 4 43.053 43.226 3 1.8514E-08 11323 20211116_3436_TMUAki_TMT10x_P_F8 151.7 103.06 28807000 45335000 599940 61961000 64223000 42727000 30522000 27409000 34911000 26988000 41989000 26826000 42365000 3351400 61748000 60763000 44370000 32858000 28628000 35575000 26375000 40286000 10 10 7 10 10 10 10 10 10 10 10 15390000 23334000 309180 31870000 54450000 33993000 21071000 13304000 16568000 12823000 21894000 14332000 21805000 2067400 31942000 51386000 34034000 22979000 14557000 17242000 12543000 20955000 4 4 2 4 4 4 4 4 4 4 4 13417000 22001000 290760 30090000 9772500 8734700 9450800 14105000 18343000 14165000 20096000 12494000 20559000 1284000 29806000 9376700 10336000 9878400 14071000 18334000 13832000 19331000 6 6 5 6 6 6 6 6 6 6 6 3814000000 2705100000 1108900000 16490 1533 15143 84042;84043;84044;84045;84046;84047;84048;84049 101649;101650;101651;101652;101653;101654;101655;101656;101657;101658;101659 101653 11 RTIAQDYGVLKADEGISFR Unmodified 2138.112 0.11201665 1533 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 2 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 55.267 55.729 4 5.2394E-51 18135 20211116_3446_TMUAki_TMT10x_S_F7 235.25 214.4 20215000 35997000 13402 21839000 33880000 40459000 27177000 27012000 31379000 27186000 30711000 18822000 33536000 1857400 23558000 32316000 39767000 28048000 28148000 31715000 26544000 29646000 3 3 2 3 3 3 3 3 3 3 3 13526000 23413000 9778.8 14210000 19259000 32006000 19554000 17890000 21171000 17662000 19959000 12594000 21812000 1188400 15412000 18473000 31190000 19869000 18895000 21424000 17259000 19291000 2 2 1 2 2 2 2 2 2 2 2 6688900 12584000 3622.8 7629300 14620000 8453700 7623300 9122200 10207000 9524500 10752000 6228000 11724000 669010 8145500 13843000 8576200 8178500 9253100 10290000 9285600 10355000 1 1 1 1 1 1 1 1 1 1 1 6571600000 4172700000 2398900000 16491 1533 15144 84050;84051;84052 101660;101661;101662 101662 3 RTIQFVDWCPTGFK Unmodified 1753.861 0.86101068 2044;2007 Q71U36;Q71U36-2;Q9BQE3;P0DPH8;P0DPH7;P0DPH7-2;Q9NY65;Q9NY65-2;Q6PEY2 TUBA1A;TUBA1C;TUBA8;TUBA3E Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-8 chain;Tubulin alpha-3E chain no no 0 0 0 1 By MS/MS By MS/MS 2.6 1.36 3 2 2 2 1 5 5 64.366 64.211 3 3.236E-10 21795 20211116_3429_TMUAki_TMT10x_P_F2 139.77 121.63 142630000 229430000 1193200 270030000 173640000 166360000 172420000 71156000 62231000 86227000 148970000 132810000 214240000 12801000 271060000 166500000 173730000 171550000 77602000 71209000 83593000 141020000 16 16 11 16 16 16 16 16 16 16 16 103050000 167710000 881740 196920000 121510000 136920000 128610000 48822000 43136000 61692000 105480000 95950000 156600000 9266400 197930000 116720000 141210000 127430000 54470000 49836000 59722000 99827000 10 10 7 10 10 10 10 10 10 10 10 39584000 61719000 311420 73113000 52131000 29435000 43813000 22334000 19095000 24535000 43487000 36857000 57633000 3534300 73130000 49781000 32521000 44111000 23132000 21373000 23871000 41195000 6 6 4 6 6 6 6 6 6 6 6 27604000000 14908000000 12696000000 16492 2044;2007 15145 84053;84054;84055;84056;84057;84058;84059;84060;84061;84062 101663;101664;101665;101666;101667;101668;101669;101670;101671;101672;101673;101674;101675;101676;101677;101678;101679 101666 17 RTLTGTAALTVQSQEDNLR Unmodified 2073.0814 0.081444804 589 P09960;P09960-2 LTA4H Leukotriene A-4 hydrolase yes no 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 42.934 43.043 3 2.4074E-31 10936 20211116_3445_TMUAki_TMT10x_S_F6 184.61 172.4 2688500 4187000 17125 5000400 4055400 4313800 2886200 4776900 4498500 3592500 4034800 2503200 3910000 233950 5033500 3858500 4447400 3038700 4798000 4489400 3557400 3906600 5 5 1 5 5 5 5 5 5 5 5 1150100 1871100 17125 2252900 2750900 3257300 1845200 2030300 2018600 1611200 1739500 1070800 1747300 116070 2286400 2614800 3228800 1924400 2113600 2036100 1590800 1686700 2 2 1 2 2 2 2 2 2 2 2 1538400 2316000 0 2747500 1304500 1056500 1041000 2746600 2479900 1981300 2295300 1432400 2162600 117870 2747100 1243800 1218600 1114300 2684400 2453300 1966600 2219900 3 3 0 3 3 3 3 3 3 3 3 383020000 242020000 141000000 16493 589 15146 84063;84064 101680;101681;101682;101683;101684 101682 5 RTMMACGGSIQTSVNALSADVLGR 2 Oxidation (M) 2526.1989 0.19887588 2609 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 2 1 By MS/MS 1 0 1 1 58.787 58.787 3 2.3932E-05 17582 20211116_3428_TMUAki_TMT10x_P_F1 71.052 64.793 2702800 5038800 30546 4346800 3234400 7295600 3963600 4687000 4338500 4047600 3884900 2516500 4699100 223740 4527400 3119100 7191800 3993900 4877900 4381200 3979400 3761700 2 2 1 2 2 2 2 2 2 2 2 2702800 5038800 30546 4346800 3234400 7295600 3963600 4687000 4338500 4047600 3884900 2516500 4699100 223740 4527400 3119100 7191800 3993900 4877900 4381200 3979400 3761700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 836250000 836250000 0 16494 2609 15147 84065 101685;101686 101685 2853;2854 2 RTMMACGGSIQTSVNALSADVLGR Oxidation (M) 2510.204 0.20396125 2609 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 1 1 By MS/MS By MS/MS 2 0 2 1 1 63.057 62.794 3 2.6716E-05 20803 20211116_3429_TMUAki_TMT10x_P_F2 70.391 60.861 7081700 11063000 93198 10713000 6920300 11838000 7173200 8297200 8541000 8543800 8788700 6594200 10322000 634310 10970000 6645100 11910000 7305200 8622100 8637900 8334200 8470500 3 3 2 3 3 3 3 3 3 3 3 5128100 7756500 91639 7716700 4558700 9766800 5304600 6014300 6273900 6199500 6107500 4775200 7237500 465180 7905700 4393000 9739000 5371700 6309800 6334300 6047100 5896800 2 2 1 2 2 2 2 2 2 2 2 1953600 3306600 1558.7 2996100 2361600 2070900 1868600 2282900 2267100 2344300 2681200 1819000 3084200 169130 3064600 2252100 2171500 1933500 2312200 2303700 2287000 2573700 1 1 1 1 1 1 1 1 1 1 1 1664900000 883570000 781280000 16495 2609 15147 84066;84067 101687;101688;101689 101687 2853;2854 3 RTMMACGGSIQTSVNALSADVLGR Unmodified 2494.209 0.20904663 2609 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 1 By MS/MS 3 0 1 1 68.285 67.828 3 1.0281E-16 24449 20211116_3441_TMUAki_TMT10x_S_F3 131.43 123.04 1698500 3055700 158850 3179600 2494600 1594700 1986400 1619100 1718500 2247400 1953000 1582700 2851800 300010 3211200 2388800 1722800 2033100 1663800 1768300 2169000 1876700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1698500 3055700 158850 3179600 2494600 1594700 1986400 1619100 1718500 2247400 1953000 1582700 2851800 300010 3211200 2388800 1722800 2033100 1663800 1768300 2169000 1876700 1 1 1 1 1 1 1 1 1 1 1 819440000 0 819440000 16496 2609 15147 84068 101690 101690 1 RTNIIPVLEDAR Unmodified 1395.7834 0.78341229 19 A6NHQ2 FBLL1 rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 44.183 44.301 3 2.9554E-08 11471 20211116_3445_TMUAki_TMT10x_S_F6 119.32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16497 19 15148 84069;84070;84071 101691;101692;101693 101693 3 RTPAEIREEFER Unmodified 1531.7743 0.77430417 2970 Q9NVH1;Q9NVH1-3;Q9NVH1-2 DNAJC11 DnaJ homolog subfamily C member 11 yes no 0 0 0 2 By MS/MS 4 0 1 1 34.664 34.689 4 9.4188E-05 8236 20211116_3431_TMUAki_TMT10x_P_F4 98.654 82.561 1243800 1953300 0 1928000 2243800 2157300 1409500 1145500 1231400 1054600 1460800 1158100 1822500 112820 1972100 2130200 2160800 1467900 1213000 1268700 1033800 1402100 1 1 0 1 1 1 1 1 1 1 1 1243800 1953300 0 1928000 2243800 2157300 1409500 1145500 1231400 1054600 1460800 1158100 1822500 112820 1972100 2130200 2160800 1467900 1213000 1268700 1033800 1402100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 94643000 94643000 0 16498 2970 15149 84072 101694 101694 1 RTPDLPEEEYVKEEIQENEEAVK Unmodified 2773.3294 0.32939881 3016 Q9NYB0 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 yes yes 0 0 0 2 By matching By MS/MS 1 0 2 1 1 64.142 64.016 4 1.6879E-20 21801 20211116_3439_TMUAki_TMT10x_S_F1 147.26 134.21 3258600 5519300 28933 5004300 3837800 2977400 3366900 2175600 2595000 2911200 3819100 3034300 5148200 305240 5111300 3669700 3140200 3415900 2274400 2717200 2812900 3646200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3258600 5519300 28933 5004300 3837800 2977400 3366900 2175600 2595000 2911200 3819100 3034300 5148200 305240 5111300 3669700 3140200 3415900 2274400 2717200 2812900 3646200 1 1 1 1 1 1 1 1 1 1 1 1155300000 843240000 312040000 16499 3016 15150 84073;84074 101695 101695 1 RTPFGAYGGLLK Unmodified 1278.7085 0.70845643 1019 P42765 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 53.363 53.544 3 0.00010812 15818 20211116_3431_TMUAki_TMT10x_P_F4 96.059 61.338 11166000 18175000 119730 18538000 17697000 19218000 12831000 16038000 14582000 13564000 15314000 10397000 16961000 1058300 18896000 16849000 19465000 13324000 16393000 14784000 13350000 14751000 3 3 1 3 3 3 3 3 3 3 3 6702600 10398000 119730 10754000 12502000 15213000 8549800 9730800 8977300 7947300 9319400 6241400 9704000 715560 11012000 11893000 15100000 8892300 10117000 9126300 7835200 8979500 2 2 1 2 2 2 2 2 2 2 2 4463700 7776900 0 7784100 5195200 4005100 4281300 6307300 5604400 5617200 5995100 4155900 7256700 342750 7884000 4956000 4365000 4431500 6276000 5657400 5514500 5771100 1 1 0 1 1 1 1 1 1 1 1 831180000 634980000 196190000 16500 1019 15151 84075;84076;84077 101696;101697;101698 101696 3 RTPGRPTSSQSYEQNIK Unmodified 1947.9763 0.97625145 278 O60573;O60573-2 EIF4E2 Eukaryotic translation initiation factor 4E type 2 yes no 0 0 0 2 By MS/MS By matching 1 0 2 1 1 29.542 29.575 4 1.2247E-07 5856 20211116_3428_TMUAki_TMT10x_P_F1 114.01 88.484 42548 65258 0 67380 123760 91688 51604 47066 54027 33178 61838 39610 60901 3846.6 68953 116800 90904 56192 49690 55134 32976 59411 1 1 0 1 1 1 1 1 1 1 1 42548 65258 0 67380 123760 91688 51604 47066 54027 33178 61838 39610 60901 3846.6 68953 116800 90904 56192 49690 55134 32976 59411 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11391000 6028000 5362800 16501 278 15152 84078;84079 101699 101699 1 RTPVQPNPIVYMMK 2 Oxidation (M) 1704.8691 0.86913253 456 O96000;O96000-2 NDUFB10 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 yes no 0 0 2 1 By MS/MS 2 0 1 1 39.03 39.115 3 0.00013105 9736 20211116_3440_TMUAki_TMT10x_S_F2 82.925 69.724 153640 273200 0 290380 162070 163950 136940 283370 310330 193500 274520 143040 254990 11166 293130 154660 177500 145590 279390 306850 192690 265920 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 153640 273200 0 290380 162070 163950 136940 283370 310330 193500 274520 143040 254990 11166 293130 154660 177500 145590 279390 306850 192690 265920 1 1 0 1 1 1 1 1 1 1 1 21854000 0 21854000 16502 456 15153 84080 101700 101700 334;335 1 RTQSSLTVSEVLTR Unmodified 1575.858 0.8580338 2112 Q86V48;Q86V48-2;Q86V48-3 LUZP1 Leucine zipper protein 1 yes no 0 0 0 1 By MS/MS 8 0 1 1 38.859 39.202 3 0.00017993 9160 20211116_3447_TMUAki_TMT10x_S_F8 85.576 53.979 711150 1236700 10129 1299300 651000 649070 699580 1025700 945500 804500 1115500 662210 1154200 64806 1311300 625860 709800 714690 1017300 957150 794840 1070800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 711150 1236700 10129 1299300 651000 649070 699580 1025700 945500 804500 1115500 662210 1154200 64806 1311300 625860 709800 714690 1017300 957150 794840 1070800 2 2 1 2 2 2 2 2 2 2 2 41257000 0 41257000 16503 2112 15154 84081 101701;101702 101702 2 RTREEEEDSTIEASDQVSDDTVEMPLPK Oxidation (M) 3221.4518 0.45177514 641 P12270 TPR Nucleoprotein TPR yes yes 0 0 1 2 By MS/MS By MS/MS 1 0 3 2 1 44.272 44.202 4;5 8.3497E-109 13684 20211116_3439_TMUAki_TMT10x_S_F1 283.26 275.07 2294900 3556300 6609.9 4137300 4353900 6167200 2955700 4125500 4358400 3966100 3396600 2136600 3320600 191610 4210000 4137800 6111700 3114600 4292800 4338400 3880100 3306300 3 3 2 3 3 3 3 3 3 3 3 1984800 2903500 2940.9 3499500 4108900 5890400 2795400 3463500 3565000 3338000 2846400 1847800 2711500 163400 3563800 3904800 5798800 2928000 3640200 3567600 3265200 2768100 2 2 1 2 2 2 2 2 2 2 2 310080 652770 3668.9 637740 245030 276800 160300 661980 793420 628090 550130 288740 609050 28216 646260 233030 312900 186630 652600 770830 614820 538220 1 1 1 1 1 1 1 1 1 1 1 1116200000 964800000 151380000 16504 641 15155 84082;84083;84084 101703;101704;101705 101705 677 3 RTREEEEDSTIEASDQVSDDTVEMPLPK Unmodified 3205.4569 0.45686052 641 P12270 TPR Nucleoprotein TPR yes yes 0 0 0 2 By MS/MS 1 0 1 1 51.966 51.685 4 6.357E-43 16793 20211116_3439_TMUAki_TMT10x_S_F1 198.09 186.77 1795500 3001800 15393 3443300 1590800 1166400 1246300 2047600 1835500 1756000 2310700 1671800 2802600 147270 3447500 1516800 1348500 1300400 2028700 1858400 1727100 2214300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1795500 3001800 15393 3443300 1590800 1166400 1246300 2047600 1835500 1756000 2310700 1671800 2802600 147270 3447500 1516800 1348500 1300400 2028700 1858400 1727100 2214300 2 2 1 2 2 2 2 2 2 2 2 242060000 0 242060000 16505 641 15155 84085 101706;101707 101707 2 RTTTGDVQVLGLVHTQK Unmodified 1852.0167 0.016659702 630 P11717 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 42.336 42.466 4 9.9302E-06 11069 20211116_3436_TMUAki_TMT10x_P_F8 94.544 74.082 1575100 2673100 76109 2815000 2758200 2748800 1739900 2339000 2374800 2063600 2217700 1467100 2494800 218090 2860700 2623700 2795200 1837800 2390600 2382600 2026800 2144200 2 2 2 2 2 2 2 2 2 2 2 955550 1584800 74946 1748800 2198400 2256800 1265500 1516700 1410300 1272300 1297300 890270 1479400 166480 1780100 2089000 2251100 1336900 1572200 1424400 1252600 1255000 1 1 1 1 1 1 1 1 1 1 1 619530 1088300 1163.2 1066100 559840 491980 474450 822240 964490 791320 920360 576850 1015400 51611 1080600 534730 544030 500890 818410 958190 774110 889200 1 1 1 1 1 1 1 1 1 1 1 158810000 77472000 81335000 16506 630 15156 84086;84087 101708;101709 101708 2 RTTVVAQLK Unmodified 1014.6186 0.61857879 1272 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E yes yes 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 33.765 33.652 3 0.00014152 8955 20211116_3429_TMUAki_TMT10x_P_F2 132.32 86.689 2460800 4048500 29937 3791200 3299100 3650500 2750700 2375400 2594800 2285700 3115800 2291400 3776800 241600 3883700 3151200 3698900 2814000 2476800 2665100 2236000 2989600 4 4 3 4 4 4 4 4 4 4 4 1405100 2279800 21726 2081800 2246700 2714600 1673600 1392500 1519900 1296900 1711000 1308400 2126600 148520 2147200 2141200 2696700 1722800 1479600 1559800 1270600 1644600 2 2 2 2 2 2 2 2 2 2 2 1055700 1768700 8210.8 1709500 1052300 935880 1077100 982880 1074900 988740 1404900 983040 1650200 93076 1736600 1010000 1002200 1091200 997130 1105300 965420 1345000 2 2 1 2 2 2 2 2 2 2 2 138600000 100310000 38284000 16507 1272 15157 84088;84089;84090;84091 101710;101711;101712;101713 101711 4 RTTYLVLDEADR Unmodified 1450.7416 0.74160705 710 P17844;P17844-2 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 1 By MS/MS By MS/MS 3 0.707 1 2 1 1 3 40.812 40.816 3 8.5248E-12 13548 20211116_3441_TMUAki_TMT10x_S_F3 163.99 127.01 3366600 5499500 71840 6294600 3588700 3350500 3111100 4623500 4591200 3882400 4954500 3135200 5134600 348020 6321400 3433300 3623500 3226500 4614500 4618900 3822300 4768200 7 7 6 7 7 7 7 7 7 7 7 563440 841050 10040 997530 987340 1033100 672170 492290 551210 511090 669100 524680 785380 60846 1007100 939310 1038100 694550 528380 570240 498390 641810 2 2 1 2 2 2 2 2 2 2 2 2803200 4658500 61800 5297100 2601400 2317500 2439000 4131300 4040000 3371300 4285400 2610500 4349200 287170 5314200 2494000 2585400 2532000 4086100 4048600 3323900 4126400 5 5 5 5 5 5 5 5 5 5 5 401660000 52887000 348770000 16508 710 15158 84092;84093;84094;84095 101714;101715;101716;101717;101718;101719;101720 101719 7 RTVPPAVTGITFLSGGQSEEEASINLNAINK Unmodified 3212.6677 0.66772041 482 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 1 By MS/MS By matching 8 0 4 2 2 86.229 86.105 4 2.4248E-35 24267 20211116_3436_TMUAki_TMT10x_P_F8 162.12 150.27 1027500 1693900 7783.5 1579400 917510 1887400 1075700 1271300 1010700 1188400 1296400 956720 1580200 89106 1623900 884090 1890000 1080800 1321100 1041200 1164100 1241700 2 2 1 2 2 2 2 2 2 2 2 1027500 1693900 7783.5 1579400 917510 1887400 1075700 1271300 1010700 1188400 1296400 956720 1580200 89106 1623900 884090 1890000 1080800 1321100 1041200 1164100 1241700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1887400000 1158500000 728900000 16509 482 15159 84096;84097;84098;84099 101721;101722 101721 2 RTYVTPPGTGFLPGDTAR Unmodified 1904.9745 0.97446054 2892 Q9NPF4 OSGEP Probable tRNA N6-adenosine threonylcarbamoyltransferase yes yes 0 0 0 1 By MS/MS 1 0 1 1 48.461 48.209 3 3.3059E-08 15351 20211116_3439_TMUAki_TMT10x_S_F1 105.91 95.53 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16510 2892 15160 84100 101723 101723 1 RVAAALPGMESTQDR Oxidation (M) 1616.7941 0.79405333 742;743 P20340;P20340-3;P20340-2;P20340-4 RAB6A Ras-related protein Rab-6A no no 0 0 1 1 By MS/MS 5 0 1 1 31.512 31.654 3 0.0010006 6189 20211116_3444_TMUAki_TMT10x_S_F5 65.038 51.376 21717 47110 0 42264 21475 21227 25582 23079 21291 22114 38826 20221 43940 0 43144 20694 22964 25602 23343 22470 21638 36911 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21717 47110 0 42264 21475 21227 25582 23079 21291 22114 38826 20221 43940 0 43144 20694 22964 25602 23343 22470 21638 36911 1 1 0 1 1 1 1 1 1 1 1 2042000 0 2042000 16511 742;743 15161 84101 101724 101724 852 1 RVAIFIEK Unmodified 974.5913 0.59130141 3056 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 1 By MS/MS By MS/MS 4.1 2.34 1 2 2 2 1 2 4 6 46.943 46.88 3 0.0002411 15848 20211116_3441_TMUAki_TMT10x_S_F3 145.72 74.344 22977000 34959000 231230 38357000 35274000 35405000 24908000 30213000 27244000 27025000 31286000 21395000 32633000 2266100 38846000 33574000 36134000 25879000 30886000 27757000 26526000 30055000 10 10 6 10 10 10 10 10 10 10 10 10299000 14787000 74424 17128000 19824000 22986000 11101000 13378000 11651000 11723000 13720000 9590100 13807000 1050900 17396000 18793000 22839000 11733000 14037000 11902000 11517000 13171000 4 4 2 4 4 4 4 4 4 4 4 12678000 20171000 156810 21229000 15450000 12420000 13807000 16836000 15593000 15302000 17566000 11805000 18826000 1215200 21450000 14781000 13295000 14146000 16849000 15855000 15008000 16884000 6 6 4 6 6 6 6 6 6 6 6 2769900000 1478100000 1291800000 16512 3056 15162 84102;84103;84104;84105;84106;84107;84108;84109;84110;84111 101725;101726;101727;101728;101729;101730;101731;101732;101733;101734;101735 101731 11 RVALGHGLK Unmodified 949.58213 0.58213371 1550 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 0 1 By MS/MS 3 0 1 1 31.347 31.094 4 0.0046076 9492 20211116_3441_TMUAki_TMT10x_S_F3 68.016 68.016 247870 459840 2983.3 367380 329520 229030 309610 322450 327920 330650 385630 230810 428740 24474 379250 315640 243960 315660 323380 334850 322600 370220 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 247870 459840 2983.3 367380 329520 229030 309610 322450 327920 330650 385630 230810 428740 24474 379250 315640 243960 315660 323380 334850 322600 370220 1 1 1 1 1 1 1 1 1 1 1 36758000 0 36758000 16513 1550 15163 84112 101736 101736 1 RVALSPAGVQNLVK Unmodified 1450.862 0.86199696 1630 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 50.758 50.659 3 0.012398 14625 20211116_3431_TMUAki_TMT10x_P_F4 57.414 40.388 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16514 1630 15164 84113;84114 101737;101738 101737 2 RVAPVLIR Unmodified 922.60762 0.60762018 872 P30419;P30419-2;O60551 NMT1;NMT2 Glycylpeptide N-tetradecanoyltransferase 1;Glycylpeptide N-tetradecanoyltransferase 2 yes no 0 0 0 1 By MS/MS By MS/MS 4 0.816 1 1 1 1 2 33.751 33.643 3 0.00092991 10464 20211116_3441_TMUAki_TMT10x_S_F3 119.29 54.039 655500 1119900 10000 921940 1096100 1207500 808580 748080 809510 779780 937280 610410 1044300 69837 958790 1044400 1202200 835240 784730 828030 760270 900200 2 2 2 2 2 2 2 2 2 2 2 444910 722920 2972.6 605810 873500 950560 574470 509070 555970 520140 643740 414280 674120 45659 631450 830210 937180 597770 540200 569530 507540 618280 1 1 1 1 1 1 1 1 1 1 1 210590 397030 7027.8 316130 222610 256940 234120 239010 253540 259640 293530 196140 370170 24178 327340 214170 265000 237470 244530 258500 252730 281920 1 1 1 1 1 1 1 1 1 1 1 53148000 37418000 15730000 16515 872 15165 84115;84116;84117 101739;101740;101741 101740 3 RVATPVDWKDGDSVMVLPTIPEEEAK Unmodified 2881.4532 0.45315953 859 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 0 2 By MS/MS By MS/MS 6 0 2 1 1 69.563 69.498 4 8.2573E-13 21892 20211116_3445_TMUAki_TMT10x_S_F6 120.08 106.89 10559000 16500000 88309 18595000 12048000 15772000 12570000 10850000 11029000 10734000 13073000 9831100 15404000 906990 18780000 11566000 16131000 12675000 11276000 11360000 10488000 12548000 3 3 1 3 3 3 3 3 3 3 3 7635800 11700000 88309 13765000 8854900 13600000 9765700 8342900 8942200 8252000 9651000 7110000 10925000 690350 13895000 8516000 13747000 9832700 8745100 9158400 8063000 9288000 2 2 1 2 2 2 2 2 2 2 2 2922700 4800100 0 4829700 3192900 2172400 2803900 2506800 2087200 2481800 3421800 2721100 4479100 216650 4885300 3049800 2384500 2842300 2531200 2202100 2424900 3259600 1 1 0 1 1 1 1 1 1 1 1 1512200000 741640000 770530000 16516 859 15166 84118;84119 101742;101743;101744 101744 3 RVATPVDWKDGDSVMVLPTIPEEEAK Oxidation (M) 2897.4481 0.44807416 859 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 1 2 By matching By MS/MS 6.5 0.5 1 1 1 1 64.019 64.239 4 1.1422E-08 21739 20211116_3446_TMUAki_TMT10x_S_F7 95.819 82.631 3102100 5748000 144190 5599400 3395900 2815400 3247600 2676500 2649500 2771800 3961300 2889500 5363000 395680 5681200 3261100 3036700 3283400 2731100 2768200 2703200 3780700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3102100 5748000 144190 5599400 3395900 2815400 3247600 2676500 2649500 2771800 3961300 2889500 5363000 395680 5681200 3261100 3036700 3283400 2731100 2768200 2703200 3780700 1 1 1 1 1 1 1 1 1 1 1 1783300000 1111000000 672340000 16517 859 15166 84120;84121 101745 101745 1027 1 RVATWFNQPAR Unmodified 1344.7051 0.70510239 813 P26373;P26373-2 RPL13 60S ribosomal protein L13 yes no 0 0 0 1 By MS/MS 6 0 1 1 38.918 39.081 3 0.00033293 9406 20211116_3445_TMUAki_TMT10x_S_F6 86.996 72.761 738590 935540 11833 1703200 496430 476760 419900 496170 651390 675680 679230 687790 875830 68871 1665000 474800 561780 437090 508870 653530 652510 654370 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 738590 935540 11833 1703200 496430 476760 419900 496170 651390 675680 679230 687790 875830 68871 1665000 474800 561780 437090 508870 653530 652510 654370 2 2 2 2 2 2 2 2 2 2 2 26554000 0 26554000 16518 813 15167 84122 101746;101747 101746 2 RVCEEIAIIPSK Unmodified 1413.765 0.76498503 562 P08708 RPS17 40S ribosomal protein S17 yes yes 0 0 0 1 By MS/MS By MS/MS 5.8 0.748 2 2 1 3 2 48.799 49.047 3 2.3642E-07 13379 20211116_3445_TMUAki_TMT10x_S_F6 130.1 114.21 45383000 70544000 268820 86681000 67822000 78302000 48001000 45590000 41933000 37913000 54151000 42252000 65886000 3495400 87164000 64495000 79550000 49538000 47774000 43359000 37344000 51859000 7 7 5 7 7 7 7 7 7 7 7 30897000 48941000 164630 57394000 58580000 71113000 37082000 38010000 32557000 29311000 39469000 28763000 45699000 2293200 58159000 55587000 70855000 38598000 40056000 33564000 28985000 37861000 4 4 3 4 4 4 4 4 4 4 4 14487000 21603000 104190 29287000 9241800 7189200 10919000 7580400 9376000 8601800 14681000 13489000 20187000 1202200 29004000 8908500 8695700 10940000 7718100 9794200 8358800 13998000 3 3 2 3 3 3 3 3 3 3 3 6985900000 4061200000 2924700000 16519 562 15168 84123;84124;84125;84126;84127 101748;101749;101750;101751;101752;101753;101754 101754 7 RVCEEIAIIPSKK Unmodified 1541.8599 0.85994805 562 P08708 RPS17 40S ribosomal protein S17 yes yes 0 0 0 2 By MS/MS By MS/MS 6.54 2.44 2 1 3 7 5 8 44.557 44.731 3;4;5 4.3611E-08 11471 20211116_3447_TMUAki_TMT10x_S_F8 108.58 90.914 89985000 133670000 345570 133600000 115250000 109210000 80734000 54643000 64049000 65898000 92084000 83784000 124720000 7705200 135940000 109630000 111540000 83180000 58648000 66884000 63896000 87962000 15 15 8 15 15 15 15 15 15 15 15 59992000 86831000 117200 85765000 87340000 85794000 52260000 34794000 40785000 41703000 58630000 55857000 81019000 5200900 87570000 82854000 86253000 54488000 38157000 42627000 40445000 56006000 8 8 5 8 8 8 8 8 8 8 8 29994000 46835000 228360 47838000 27905000 23418000 28474000 19849000 23263000 24195000 33454000 27927000 43706000 2504300 48366000 26774000 25283000 28691000 20491000 24256000 23451000 31957000 7 7 3 7 7 7 7 7 7 7 7 9787400000 5942000000 3845500000 16520 562 15169 84128;84129;84130;84131;84132;84133;84134;84135;84136;84137;84138;84139;84140 101755;101756;101757;101758;101759;101760;101761;101762;101763;101764;101765;101766;101767;101768;101769;101770 101769 16 RVDAVIPPYPR Unmodified 1281.7194 0.71935547 56 CON__Q3ZBS7 yes yes 0 0 0 1 By MS/MS By MS/MS 5.75 2.77 2 4 2 3 5 41.309 41.518 3 1.9863E-08 11694 20211116_3446_TMUAki_TMT10x_S_F7 124.21 106.39 + 22869000 34582000 7835.7 38599000 36750000 33251000 25460000 19774000 19993000 20047000 27759000 21289000 32283000 1502000 39013000 34915000 33901000 26246000 20793000 20854000 19568000 26537000 11 11 1 11 11 11 11 11 11 11 11 15643000 23235000 0 26571000 29516000 27672000 18297000 13867000 14154000 13912000 18903000 14562000 21693000 1054200 26888000 27991000 27813000 19018000 14797000 14749000 13585000 18088000 6 6 0 6 6 6 6 6 6 6 6 7226100 11347000 7835.7 12027000 7233400 5578500 7162800 5907800 5838400 6135300 8855800 6727000 10590000 447780 12125000 6924100 6088200 7228200 5996900 6104600 5982700 8449500 5 5 1 5 5 5 5 5 5 5 5 4250900000 2847400000 1403500000 16521 56 15170 84141;84142;84143;84144;84145;84146;84147;84148 101771;101772;101773;101774;101775;101776;101777;101778;101779;101780;101781;101782;101783 101782 13 RVDPVYIHLAER Unmodified 1466.7994 0.7993967 1591 Q13085;Q13085-4;Q13085-3;Q13085-2 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 0 0 0 1 By MS/MS 6 0 1 1 38.277 38.283 4 0.10581 8674 20211116_3434_TMUAki_TMT10x_P_F6 28.532 19.803 688290 953790 0 1320600 1777800 1581000 959320 755210 756460 718220 796740 640860 891360 71454 1325200 1684000 1576000 1009600 808420 779870 702980 767340 1 1 0 1 1 1 1 1 1 1 1 688290 953790 0 1320600 1777800 1581000 959320 755210 756460 718220 796740 640860 891360 71454 1325200 1684000 1576000 1009600 808420 779870 702980 767340 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 128420000 128420000 0 16522 1591 15171 84149 101784 101784 1 RVEDAYILTCNVSLEYEK Unmodified 2201.0674 0.067434223 982 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 1 By MS/MS By MS/MS 6 0 3 1 2 64.352 64.332 3 7.5379E-18 19660 20211116_3445_TMUAki_TMT10x_S_F6 145.43 121.24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16523 982 15172 84150;84151;84152 101785;101786;101787 101786 3 RVEELVAK Unmodified 942.54983 0.54983053 2985 Q9NWB6;Q9NWB6-3;Q9NWB6-2 ARGLU1 Arginine and glutamate-rich protein 1 yes no 0 0 0 1 By MS/MS 5 0 1 1 36.56 36.533 3 0.0043966 9362 20211116_3433_TMUAki_TMT10x_P_F5 88.496 20.598 1908000 2827200 17711 2874200 2876500 3396500 2335500 1697700 1759100 1805600 2368200 1776700 2638200 188260 2936700 2745600 3389700 2379500 1815100 1836400 1759000 2265700 1 1 1 1 1 1 1 1 1 1 1 1908000 2827200 17711 2874200 2876500 3396500 2335500 1697700 1759100 1805600 2368200 1776700 2638200 188260 2936700 2745600 3389700 2379500 1815100 1836400 1759000 2265700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 98974000 98974000 0 16524 2985 15173 84153 101788 101788 1 RVEGPGSLGLEESGSR Unmodified 1628.8118 0.81181188 1581 Q12972;Q12972-2;Q12972-3 PPP1R8 Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay yes no 0 0 0 1 By MS/MS 3 0 1 1 35.645 35.405 3 2.1096E-10 11196 20211116_3441_TMUAki_TMT10x_S_F3 124.43 109.56 344900 532900 13556 720910 369200 365710 445170 425460 511500 384890 631970 321240 497950 41569 716850 356740 395810 449640 428350 521740 377580 605910 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 344900 532900 13556 720910 369200 365710 445170 425460 511500 384890 631970 321240 497950 41569 716850 356740 395810 449640 428350 521740 377580 605910 1 1 1 1 1 1 1 1 1 1 1 24509000 0 24509000 16525 1581 15174 84154 101789 101789 1 RVEGPGSLGLEESGSRR Unmodified 1784.9129 0.91292291 1581 Q12972;Q12972-2;Q12972-3 PPP1R8 Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay yes no 0 0 0 2 By MS/MS 4.5 0.5 1 1 2 31.767 31.752 4 4.9262E-15 7380 20211116_3433_TMUAki_TMT10x_P_F5 142.78 115.81 851620 1291700 10664 1293300 1725200 1440500 1019600 785940 905430 766240 1093300 793030 1205300 92779 1321400 1637100 1443700 1067600 831540 932780 749160 1048800 2 2 2 2 2 2 2 2 2 2 2 851620 1291700 10664 1293300 1725200 1440500 1019600 785940 905430 766240 1093300 793030 1205300 92779 1321400 1637100 1443700 1067600 831540 932780 749160 1048800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 87035000 87035000 0 16526 1581 15175 84155;84156 101790;101791 101791 2 RVEHNQSYSQAGITETEWTSGSSK Unmodified 2681.2318 0.23175045 1007 P42167 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes yes 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 37.428 37.495 4 3.5486E-73 8522 20211116_3444_TMUAki_TMT10x_S_F5 252.6 234.45 904090 1588100 0 2695600 2653300 2032700 1530500 671720 845080 718880 1131400 841380 1486000 46461 2661800 2512500 2081100 1589900 753060 899880 700150 1082500 2 2 0 2 2 2 2 2 2 2 2 618420 1099400 0 1759900 2489200 1885300 1385700 500550 632170 485030 718910 575390 1028400 24848 1750700 2355600 1881700 1440000 578340 679180 474340 690830 1 1 0 1 1 1 1 1 1 1 1 285680 488660 0 935610 164100 147440 144770 171170 212920 233850 412450 265990 457640 21613 911130 156840 199350 149970 174710 220700 225810 391690 1 1 0 1 1 1 1 1 1 1 1 242550000 178310000 64240000 16527 1007 15176 84157;84158 101792;101793 101793 2 RVEILNEHRGEK Unmodified 1478.7954 0.79537396 2946 Q9NTJ3;Q9NTJ3-2 SMC4 Structural maintenance of chromosomes protein 4 yes no 0 0 0 2 By MS/MS 4.5 0.5 1 1 2 29.639 29.625 4 4.1825E-07 6535 20211116_3433_TMUAki_TMT10x_P_F5 127.36 94.832 398910 583990 2624.9 557840 552480 628200 414760 341710 342320 337670 474300 371440 544830 37669 571990 526440 629190 425670 361760 356100 329950 453460 2 2 2 2 2 2 2 2 2 2 2 398910 583990 2624.9 557840 552480 628200 414760 341710 342320 337670 474300 371440 544830 37669 571990 526440 629190 425670 361760 356100 329950 453460 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22167000 22167000 0 16528 2946 15177 84159;84160 101794;101795 101795 2 RVEIMEEESEQ Oxidation (M) 1393.6031 0.60312424 1220 P54578;P54578-2;P54578-3 USP14 Ubiquitin carboxyl-terminal hydrolase 14 yes no 0 0 1 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 32.677 32.613 2 3.1676E-11 8937 20211116_3439_TMUAki_TMT10x_S_F1 168 161.62 463830 772260 2021.2 881220 1017800 806800 617160 657240 794900 497400 779670 431870 721010 46131 890180 965820 823150 652460 671000 800350 492380 752590 3 3 1 3 3 3 3 3 3 3 3 293870 494780 2021.2 555130 853860 648590 470350 384160 473980 303430 498040 273620 461910 32152 563460 809070 649030 497260 401520 482880 299680 479700 2 2 1 2 2 2 2 2 2 2 2 169960 277480 0 326090 163920 158220 146810 273080 320920 193970 281630 158250 259100 13979 326720 156740 174120 155200 269480 317470 192700 272900 1 1 0 1 1 1 1 1 1 1 1 254920000 175640000 79287000 16529 1220 15178 84161;84162;84163 101796;101797;101798 101798 1640 3 RVEIMEEESEQ Unmodified 1377.6082 0.60820962 1220 P54578;P54578-2;P54578-3 USP14 Ubiquitin carboxyl-terminal hydrolase 14 yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 38.599 38.593 2 5.9973E-22 11480 20211116_3439_TMUAki_TMT10x_S_F1 238.51 226.67 828620 1213300 0 1635000 1275300 881690 831870 624530 699410 619020 1092000 771430 1133700 62796 1626900 1210900 938890 862890 647790 731250 604800 1041300 4 4 0 4 4 4 4 4 4 4 4 318170 454880 0 637720 813400 571920 409560 225050 241400 250810 429750 296210 425140 29209 636680 769500 578890 431340 247090 259620 243890 408730 1 1 0 1 1 1 1 1 1 1 1 510460 758390 0 997310 461880 309770 422320 399480 458010 368210 662250 475220 708560 33587 990270 441350 360000 431550 400700 471630 360900 632520 3 3 0 3 3 3 3 3 3 3 3 203140000 108280000 94860000 16530 1220 15178 84164;84165;84166;84167 101799;101800;101801;101802;101803 101801 5 RVENSIPAAGETQNVEVAAGPAGK Unmodified 2364.2034 0.20335085 1753 Q15020;Q15020-4 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 0 0 0 1 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 43.176 43.321 3 5.425E-48 11733 20211116_3431_TMUAki_TMT10x_P_F4 204.04 182.36 774310 1287100 8883.7 1578600 1528800 1742900 968810 1754600 1721600 1349900 1354100 721010 1202100 81886 1592300 1452200 1765700 1035300 1771200 1705500 1335000 1317600 2 2 1 2 2 2 2 2 2 2 2 436670 643480 8883.7 877690 1273800 1436400 747730 909870 900460 709510 738860 406650 601320 56207 887200 1208700 1417000 790690 945670 903650 701200 717760 1 1 1 1 1 1 1 1 1 1 1 337640 643630 0 700960 254950 306580 221090 844690 821150 640370 615240 314370 600790 25680 705150 243540 348750 244600 825550 801810 633840 599870 1 1 0 1 1 1 1 1 1 1 1 517590000 316440000 201150000 16531 1753 15179 84168;84169;84170 101804;101805 101804 2 RVEPQTEDDLFPCTCHR Unmodified 2158.9524 0.95242124 2022 Q6UW63 KDELC1 KDEL motif-containing protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 37.667 37.512 4 0.00088967 9423 20211116_3431_TMUAki_TMT10x_P_F4 62.765 52.131 2955900 4769600 61475 5501000 6193600 6046900 3484500 3694200 4264500 2955800 4144700 2752500 4453300 323120 5568400 5872700 6073700 3700300 3852600 4300000 2917200 4001900 3 3 2 3 3 3 3 3 3 3 3 2431300 3811600 44653 4452800 5644000 5561600 2978900 2928300 3404800 2295700 3329200 2263900 3559100 263600 4513900 5345800 5538200 3174100 3091200 3442500 2268100 3213900 2 2 1 2 2 2 2 2 2 2 2 524570 957990 16822 1048200 549580 485390 505670 765900 859660 660120 815450 488550 894240 59518 1054500 526870 535500 526180 761390 857500 649070 788010 1 1 1 1 1 1 1 1 1 1 1 245070000 207490000 37580000 16532 2022 15180 84171;84172;84173 101806;101807;101808 101807 3 RVESPVLPPVLVPR Unmodified 1556.9402 0.94024728 1830 Q15797;Q99717 SMAD1;SMAD5 Mothers against decapentaplegic homolog 1;Mothers against decapentaplegic homolog 5 yes no 0 0 0 1 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 55.938 55.651 3 1.2163E-09 17845 20211116_3429_TMUAki_TMT10x_P_F2 136.33 120.19 6743200 11481000 270990 12117000 8162100 8228800 6681300 9457500 9343000 8456300 9777600 6280600 10716000 831480 12258000 7805400 8650400 6936900 9523800 9403900 8300100 9418600 4 4 4 4 4 4 4 4 4 4 4 1719300 2770600 86597 2756900 3106800 3725300 2227100 2409100 2126800 2160500 2645700 1601500 2585200 242680 2827900 2962100 3705800 2302000 2508400 2186400 2120300 2536100 1 1 1 1 1 1 1 1 1 1 1 5023800 8710800 184400 9359700 5055200 4503500 4454100 7048400 7216300 6295800 7131900 4679100 8130500 588800 9430000 4843300 4944600 4634900 7015400 7217500 6179800 6882500 3 3 3 3 3 3 3 3 3 3 3 1567900000 848320000 719550000 16533 1830 15181 84174;84175;84176;84177 101809;101810;101811;101812 101809 4 RVFIMDNCEELIPEYLNFIR Oxidation (M) 2586.2611 0.26106543 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 1 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 78.44 78.454 3 5.0006E-07 27608 20211116_3446_TMUAki_TMT10x_S_F7 95.429 19.685 8621900 12879000 0 14141000 8684500 10333000 9515400 6504600 6407300 6849700 8537600 8026800 12022000 588970 14280000 8339700 10676000 9512200 6817000 6729900 6675600 8169900 2 2 0 2 2 2 2 2 2 2 2 5331100 7697700 0 8908800 4099200 6954100 5587000 3643100 3692400 3803800 4937900 4963100 7187300 343490 8973700 3962600 7130500 5530700 3875900 3883500 3708400 4724900 1 1 0 1 1 1 1 1 1 1 1 3290700 5181400 0 5232600 4585300 3379400 3928400 2861500 2714900 3045900 3599600 3063600 4835000 245480 5306800 4377100 3545400 3981500 2941100 2846400 2967200 3445000 1 1 0 1 1 1 1 1 1 1 1 4213100000 1559800000 2653300000 16534 544 15182 84178;84179;84180;84181 101813;101814 101814 489 2 RVFIMDSCDELIPEYLNFIR Oxidation (M) 2545.2345 0.23451633 553 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 1 1 By MS/MS By MS/MS 6.67 1.37 1 1 2 2 4 2 78.773 78.785 3 3.8905E-09 25855 20211116_3436_TMUAki_TMT10x_P_F8 110.37 101.87 19781000 35796000 15964 28131000 22374000 36855000 25702000 21704000 23056000 24559000 25662000 18418000 33373000 852230 29370000 21534000 36667000 25815000 22918000 23664000 23868000 24675000 5 5 1 5 5 5 5 5 5 5 5 14369000 26009000 15964 20406000 13692000 28164000 17904000 14293000 15299000 17909000 17960000 13379000 24248000 852230 21329000 13232000 27902000 17860000 15341000 15773000 17342000 17243000 4 4 1 4 4 4 4 4 4 4 4 5412000 9787200 0 7725100 8681600 8690900 7798300 7411000 7757100 6649300 7702200 5039100 9124800 0 8040900 8302100 8765400 7955100 7576800 7891400 6525500 7431800 1 1 0 1 1 1 1 1 1 1 1 10035000000 5305200000 4729500000 16535 553 15183 84182;84183;84184;84185;84186;84187 101815;101816;101817;101818;101819 101817 511 5 RVFITDDFHDMMPK 2 Oxidation (M) 1782.8069 0.8069262 672 P14625 HSP90B1 Endoplasmin yes yes 0 0 2 1 By MS/MS By MS/MS 5.62 0.992 1 3 2 2 5 3 42.176 42.409 3;4 0.00028568 11612 20211116_3433_TMUAki_TMT10x_P_F5 80.441 65.049 14912000 22427000 49159 22587000 24527000 28996000 16895000 25203000 26170000 21613000 20911000 13885000 20928000 857220 23127000 23324000 29059000 17823000 25708000 26031000 21256000 20335000 8 8 6 8 8 8 8 8 8 8 8 10861000 15932000 11195 15532000 20705000 25021000 13191000 17627000 18042000 15068000 14582000 10112000 14865000 489140 16016000 19660000 24738000 13923000 18218000 18020000 14822000 14173000 5 5 3 5 5 5 5 5 5 5 5 4051600 6495500 37964 7054800 3822300 3975900 3704200 7575800 8128200 6544200 6329900 3772700 6063000 368080 7111500 3664400 4321100 3900400 7490000 8011600 6433900 6161900 3 3 3 3 3 3 3 3 3 3 3 3694200000 2836200000 858010000 16536 672 15184 84188;84189;84190;84191;84192;84193;84194;84195 101820;101821;101822;101823;101824;101825;101826;101827;101828 101821 745;746 9 RVFITDDFHDMMPK Oxidation (M) 1766.812 0.81201158 672 P14625 HSP90B1 Endoplasmin yes yes 0 0 1 1 By MS/MS By MS/MS 6.09 0.793 3 4 4 6 5 49.606 49.905 4 8.8613E-10 13183 20211116_3434_TMUAki_TMT10x_P_F6 136.6 123.62 37816000 59833000 277290 67590000 56252000 57279000 43882000 33493000 29951000 32550000 45033000 35210000 55860000 3349800 68251000 53623000 58453000 44727000 35226000 31614000 31828000 42974000 18 18 10 18 18 18 18 18 18 18 18 25655000 39644000 236110 44701000 42719000 47797000 32610000 22982000 20272000 21540000 29891000 23888000 37011000 2471400 45291000 40714000 47944000 33225000 24576000 21505000 21096000 28537000 12 12 8 12 12 12 12 12 12 12 12 12160000 20189000 41184 22890000 13533000 9481400 11271000 10511000 9678300 11010000 15141000 11321000 18848000 878380 22960000 12910000 10509000 11502000 10650000 10110000 10732000 14437000 6 6 2 6 6 6 6 6 6 6 6 5270000000 2888600000 2381400000 16537 672 15184 84196;84197;84198;84199;84200;84201;84202;84203;84204;84205;84206 101829;101830;101831;101832;101833;101834;101835;101836;101837;101838;101839;101840;101841;101842;101843;101844;101845;101846 101835 745;746 18 RVFITDDFHDMMPK Unmodified 1750.8171 0.81709696 672 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 58.262 58.601 4 6.26E-14 19331 20211116_3446_TMUAki_TMT10x_S_F7 145.81 135.03 13220000 19204000 73518 23705000 14851000 14042000 14744000 7348100 6031200 7181300 13129000 12309000 17937000 1145000 23720000 14239000 14750000 14691000 7803800 6768800 7020500 12445000 6 6 4 6 6 6 6 6 6 6 6 8924600 12524000 50716 15374000 10169000 11227000 10789000 4883500 4168400 4879900 8701400 8309700 11697000 762170 15420000 9766300 11550000 10706000 5285200 4691200 4766100 8253600 4 4 2 4 4 4 4 4 4 4 4 4295500 6680100 22802 8331200 4682100 2814900 3954400 2464600 1862800 2301400 4427700 3999700 6239500 382790 8300100 4472500 3200000 3984400 2518700 2077600 2254400 4191800 2 2 2 2 2 2 2 2 2 2 2 2232000000 1031300000 1200700000 16538 672 15184 84207;84208;84209;84210 101847;101848;101849;101850;101851;101852 101852 6 RVFNDCRDIIQR Unmodified 1590.8049 0.80489279 1393 P63092;Q5JWF2;P63092-4;Q5JWF2-2;P63092-3;P63092-2;P38405;P38405-2;P38405-3 GNAS;GNAL Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(olf) subunit alpha yes no 0 0 0 2 By MS/MS By matching 1 0 2 1 1 33.628 33.633 4 0.0037114 7438 20211116_3428_TMUAki_TMT10x_P_F1 70.68 44.148 177190 281890 4770.1 317120 357620 347460 213520 195690 212850 189240 246160 165020 263170 21663 321480 339570 348690 224100 206430 217750 185090 236430 1 1 1 1 1 1 1 1 1 1 1 177190 281890 4770.1 317120 357620 347460 213520 195690 212850 189240 246160 165020 263170 21663 321480 339570 348690 224100 206430 217750 185090 236430 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26630000 15712000 10918000 16539 1393 15185 84211;84212 101853 101853 1 RVFQEFLK Unmodified 1065.5971 0.59711507 3372 yes no 0 0 0 1 By MS/MS By matching 1.6 0.49 2 3 4 1 50.862 50.729 3 0.00076966 14332 20211116_3428_TMUAki_TMT10x_P_F1 123.35 0 + 9299200 14486000 109980 17366000 21771000 24062000 13240000 13448000 12702000 11395000 13366000 8659300 13527000 1048100 17613000 20667000 23862000 13860000 14147000 12969000 11213000 12873000 6 6 6 6 6 6 6 6 6 6 6 9299200 14486000 109980 17366000 21771000 24062000 13240000 13448000 12702000 11395000 13366000 8659300 13527000 1048100 17613000 20667000 23862000 13860000 14147000 12969000 11213000 12873000 6 6 6 6 6 6 6 6 6 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1090100000 970990000 119160000 16540 3372 15186 84213;84214;84215;84216;84217 101854;101855;101856 101855 3 RVGFQYEGTYK Unmodified 1346.6619 0.66190017 626 P11413;P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 39.59 39.894 3 2.2241E-08 9421 20211116_3447_TMUAki_TMT10x_S_F8 149.93 129.51 5073200 7629300 14375 9416600 9153100 7678100 5557200 4539200 5530400 4754800 6364500 4723700 7125700 489670 9454200 8686800 7858600 5824100 4780000 5657000 4634900 6113800 4 4 3 4 4 4 4 4 4 4 4 3566600 5348300 2719.3 6448100 7633400 6649100 4090200 3225700 3991300 3397300 4321900 3320800 4994700 353720 6503400 7230300 6684400 4331100 3457600 4076500 3310900 4159000 3 3 2 3 3 3 3 3 3 3 3 1506600 2281000 11656 2968500 1519700 1029000 1466900 1313500 1539100 1357500 2042600 1402900 2131000 135950 2950800 1456500 1174300 1493000 1322400 1580500 1324000 1954800 1 1 1 1 1 1 1 1 1 1 1 391920000 245990000 145940000 16541 626 15187 84218;84219;84220 101857;101858;101859;101860 101860 4 RVGGVQSLGGTGALR Unmodified 1426.8005 0.80045934 703 P17174;P17174-2 GOT1 Aspartate aminotransferase, cytoplasmic yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 34.57 34.339 3 5.0156E-14 10732 20211116_3441_TMUAki_TMT10x_S_F3 142.4 87.137 2806500 4639900 55274 4319100 3140100 3407700 2847000 1787700 2083700 1773500 3108000 2613500 4328300 288860 4415200 3006900 3491400 2879500 1899000 2189600 1732600 2966500 2 2 2 2 2 2 2 2 2 2 2 2034200 3419400 44939 3036500 2467300 2783300 2084900 1017500 1339600 1172100 2144900 1894400 3189300 216600 3121000 2358900 2811400 2111700 1128300 1424000 1138400 2044200 1 1 1 1 1 1 1 1 1 1 1 772320 1220500 10335 1282600 672790 624360 762120 770220 744140 601360 963090 719180 1139100 72269 1294200 647970 679930 767820 770690 765590 594280 922280 1 1 1 1 1 1 1 1 1 1 1 116490000 63319000 53169000 16542 703 15188 84221;84222 101861;101862 101862 2 RVGLPPGK Unmodified 822.50757 0.50757178 1740 Q14978;Q14978-2;Q14978-3 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 0 0 0 1 By MS/MS By MS/MS 1.86 0.639 2 4 1 2 5 31.087 31.05 3 0.0034421 8361 20211116_3429_TMUAki_TMT10x_P_F2 93.374 80.415 4053400 6570300 15487 5904300 5053900 5535900 4644500 3029800 3536300 3330300 4765200 3774100 6128300 345280 6064900 4835500 5606000 4698300 3216000 3689700 3240100 4558700 8 8 5 8 8 8 8 8 8 8 8 2154500 3451900 4086.4 3090600 3115800 3754400 2437000 1532700 1842900 1702900 2544900 2006000 3219600 178370 3188400 2969700 3733900 2489100 1675600 1925700 1656100 2433200 3 3 1 3 3 3 3 3 3 3 3 1898900 3118400 11400 2813700 1938100 1781500 2207500 1497100 1693500 1627400 2220300 1768100 2908600 166910 2876500 1865800 1872100 2209200 1540400 1764000 1584000 2125500 5 5 4 5 5 5 5 5 5 5 5 227800000 161640000 66161000 16543 1740 15189 84223;84224;84225;84226;84227;84228;84229 101863;101864;101865;101866;101867;101868;101869;101870 101864 8 RVGPVAATYPMLNK Oxidation (M) 1531.8181 0.81808324 2893 Q9NPH2;Q9NPH2-2;Q9NPH2-3 ISYNA1 Inositol-3-phosphate synthase 1 yes no 0 0 1 1 By MS/MS By MS/MS 3 0 2 1 1 44.183 43.848 3 0.0052257 13266 20211116_3430_TMUAki_TMT10x_P_F3 63.181 42.228 1029100 1644700 35115 1944300 1065500 915250 908000 1154300 1094100 1021600 1403000 958450 1535800 118550 1946900 1019800 1001200 935020 1157600 1115900 1003300 1343900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1029100 1644700 35115 1944300 1065500 915250 908000 1154300 1094100 1021600 1403000 958450 1535800 118550 1946900 1019800 1001200 935020 1157600 1115900 1003300 1343900 1 1 1 1 1 1 1 1 1 1 1 53729000 0 53729000 16544 2893 15190 84230;84231 101871;101872 101871 3009 2 RVGPVAATYPMLNK Unmodified 1515.8232 0.82316861 2893 Q9NPH2;Q9NPH2-2;Q9NPH2-3 ISYNA1 Inositol-3-phosphate synthase 1 yes no 0 0 0 1 By MS/MS 3 0 1 1 49.174 48.821 3 0.00035632 16649 20211116_3441_TMUAki_TMT10x_S_F3 70.438 51.227 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16545 2893 15190 84232 101873 101873 1 RVHLMNPMVPGLTGSK 2 Oxidation (M) 1767.9124 0.91239433 1219 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 2 1 By matching By MS/MS 2.33 0.471 2 1 1 2 40.624 40.457 4 7.3378E-06 13209 20211116_3441_TMUAki_TMT10x_S_F3 98.312 69.731 603050 842240 0 1005700 468990 578680 420270 1256600 1721800 1202900 1050900 561460 786510 44259 1008000 448220 631090 469140 1241800 1670900 1177000 1034600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 603050 842240 0 1005700 468990 578680 420270 1256600 1721800 1202900 1050900 561460 786510 44259 1008000 448220 631090 469140 1241800 1670900 1177000 1034600 1 1 0 1 1 1 1 1 1 1 1 212870000 93196000 119680000 16546 1219 15191 84233;84234;84235 101874 101874 1636;1637 1 RVHPVSTMIK Oxidation (M) 1182.6543 0.65431237 462 P00338;P00338-3;P00338-4 LDHA L-lactate dehydrogenase A chain yes no 0 0 1 1 By MS/MS 2 0 1 1 29.465 29.231 3 0.027976 7276 20211116_3429_TMUAki_TMT10x_P_F2 50.648 34.016 166940 311110 0 251700 309300 386490 211960 205170 217280 191600 247300 155390 290070 9940.8 262980 293740 381340 220250 217350 221880 187690 237630 1 1 0 1 1 1 1 1 1 1 1 166940 311110 0 251700 309300 386490 211960 205170 217280 191600 247300 155390 290070 9940.8 262980 293740 381340 220250 217350 221880 187690 237630 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9344200 9344200 0 16547 462 15192 84236 101875 101875 343 1 RVIAEGDLGIVEK Unmodified 1397.7878 0.78782897 449 O95861;O95861-4;O95861-2 BPNT1 3'(2'),5'-bisphosphate nucleotidase 1 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 49.001 49.157 3 0.0030503 13260 20211116_3444_TMUAki_TMT10x_S_F5 66.285 45.415 2104800 3518700 4820.4 3787500 4318200 4704300 2900100 2272600 2688900 2009000 2855400 1959800 3284300 210000 3858600 4105100 4681300 3009300 2425500 2750600 1973000 2749300 1 1 1 1 1 1 1 1 1 1 1 2104800 3518700 4820.4 3787500 4318200 4704300 2900100 2272600 2688900 2009000 2855400 1959800 3284300 210000 3858600 4105100 4681300 3009300 2425500 2750600 1973000 2749300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 185670000 185670000 0 16548 449 15193 84237;84238 101876;101877 101877 2 RVIISAPSADAPMFVMGVNHEK 2 Oxidation (M) 2400.193 0.19298586 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 2 1 By MS/MS By MS/MS 6.21 2.24 2 3 5 4 7 7 48.103 48.313 3;4;5 7.0899E-20 13058 20211116_3445_TMUAki_TMT10x_S_F6 152.38 133.55 143600000 236600000 1333100 259060000 199470000 248630000 146460000 170130000 199220000 177470000 194370000 133710000 220850000 12104000 262540000 189910000 252170000 152960000 177160000 200190000 173020000 187650000 30 30 16 30 30 30 30 30 30 30 30 93494000 150430000 1013600 168010000 142350000 206260000 101390000 102180000 118040000 104310000 120480000 87054000 140430000 8287200 170730000 135480000 205430000 105500000 109200000 119450000 101790000 116150000 17 17 7 17 17 17 17 17 17 17 17 50107000 86169000 319470 91056000 57120000 42368000 45069000 67952000 81177000 73161000 73888000 46651000 80423000 3817200 91819000 54438000 46740000 47463000 67954000 80745000 71238000 71503000 13 13 9 13 13 13 13 13 13 13 13 121600000000 64232000000 57370000000 16549 489 15194 84239;84240;84241;84242;84243;84244;84245;84246;84247;84248;84249;84250;84251;84252 101878;101879;101880;101881;101882;101883;101884;101885;101886;101887;101888;101889;101890;101891;101892;101893;101894;101895;101896;101897;101898;101899;101900;101901;101902;101903;101904;101905;101906;101907 101897 389;390 30 RVIISAPSADAPMFVMGVNHEK Oxidation (M) 2384.1981 0.19807124 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 1 1 By MS/MS By MS/MS 4.84 3.07 8 6 2 5 11 18 14 53.138 53.174 3;4;5 1.1102E-44 15129 20211116_3436_TMUAki_TMT10x_P_F8 205.84 188.77 257330000 393920000 3374200 503060000 327070000 265580000 253570000 160820000 149140000 155650000 278680000 239620000 367980000 23209000 501950000 311890000 282850000 257820000 168640000 160890000 152220000 264820000 51 51 31 51 51 51 51 51 51 51 51 125250000 189180000 2050900 247280000 192700000 187720000 143460000 74139000 65840000 70599000 132690000 116630000 176740000 11830000 247270000 183600000 192360000 145690000 81006000 72749000 69097000 125930000 23 23 13 23 23 23 23 23 23 23 23 132080000 204740000 1323300 255790000 134370000 77855000 110110000 86679000 83296000 85046000 145990000 122990000 191240000 11379000 254680000 128290000 90487000 112130000 87635000 88137000 83127000 138890000 28 28 18 28 28 28 28 28 28 28 28 172110000000 97265000000 74843000000 16550 489 15194 84253;84254;84255;84256;84257;84258;84259;84260;84261;84262;84263;84264;84265;84266;84267;84268;84269;84270;84271;84272;84273;84274;84275;84276;84277;84278;84279;84280;84281;84282;84283;84284 101908;101909;101910;101911;101912;101913;101914;101915;101916;101917;101918;101919;101920;101921;101922;101923;101924;101925;101926;101927;101928;101929;101930;101931;101932;101933;101934;101935;101936;101937;101938;101939;101940;101941;101942;101943;101944;101945;101946;101947;101948;101949;101950;101951;101952;101953;101954;101955;101956;101957;101958 101922 389;390 51 RVIISAPSADAPMFVMGVNHEK Unmodified 2368.2032 0.20315662 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 1 By MS/MS By MS/MS 4.19 3.15 5 4 2 5 9 7 58.349 58.358 3;4;5 2.0403E-68 17449 20211116_3436_TMUAki_TMT10x_P_F8 251.13 217.73 390670000 561700000 2537300 830720000 408700000 281620000 369110000 160630000 126080000 143190000 352450000 363750000 525130000 28004000 820260000 390880000 318050000 368950000 168900000 146930000 140560000 332990000 31 31 16 31 31 31 31 31 31 31 31 259510000 361500000 1347500 543910000 273450000 210550000 258810000 89644000 63872000 75242000 219650000 241630000 338000000 17088000 537010000 261820000 232340000 257250000 96815000 79036000 74078000 207070000 16 16 8 16 16 16 16 16 16 16 16 131160000 200200000 1189800 286810000 135250000 71069000 110310000 70984000 62210000 67945000 132800000 122120000 187130000 10916000 283250000 129060000 85706000 111700000 72085000 67898000 66484000 125920000 15 15 8 15 15 15 15 15 15 15 15 92791000000 53324000000 39468000000 16551 489 15194 84285;84286;84287;84288;84289;84290;84291;84292;84293;84294;84295;84296;84297;84298;84299;84300 101959;101960;101961;101962;101963;101964;101965;101966;101967;101968;101969;101970;101971;101972;101973;101974;101975;101976;101977;101978;101979;101980;101981;101982;101983;101984;101985;101986;101987;101988;101989 101972 31 RVIISAPSADAPMFVMGVNHEKYDNSLK 2 Oxidation (M) 3120.5372 0.53724029 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 2 2 By MS/MS By MS/MS 5 3.29 4 2 4 5 5 52.827 52.891 5;6 3.7167E-34 14727 20211116_3447_TMUAki_TMT10x_S_F8 178.2 166.46 38719000 78078000 365590 51145000 74659000 157650000 59263000 203500000 200130000 156800000 99068000 36053000 72755000 2947800 55671000 71213000 155060000 65279000 203190000 193850000 155070000 98696000 16 16 9 16 16 16 16 16 16 16 16 20289000 39813000 81906 25321000 40022000 118320000 38365000 110590000 110180000 84198000 52960000 18891000 37096000 1144200 28246000 38336000 114630000 41226000 112040000 106920000 83319000 52860000 7 7 4 7 7 7 7 7 7 7 7 18430000 38265000 283680 25824000 34637000 39323000 20898000 92914000 89946000 72607000 46108000 17161000 35659000 1803500 27425000 32877000 40431000 24053000 91156000 86927000 71748000 45836000 9 9 5 9 9 9 9 9 9 9 9 25768000000 15303000000 10465000000 16552 489 15195 84301;84302;84303;84304;84305;84306;84307;84308;84309;84310 101990;101991;101992;101993;101994;101995;101996;101997;101998;101999;102000;102001;102002;102003;102004;102005 102004 389;390 16 RVIISAPSADAPMFVMGVNHEKYDNSLK Oxidation (M) 3104.5423 0.54232567 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 1 2 By MS/MS By MS/MS 4.5 3.2 2 1 1 2 2 4 56.521 56.541 5 7.6748E-42 17043 20211116_3440_TMUAki_TMT10x_S_F2 181.24 169.02 31171000 69124000 521300 27547000 70949000 115860000 71851000 60703000 41628000 67824000 57705000 29027000 64344000 3509400 32359000 68075000 111340000 71898000 64715000 44242000 65947000 55168000 8 8 4 8 8 8 8 8 8 8 8 18853000 41932000 419080 13729000 40859000 95396000 56650000 37714000 25080000 44683000 34431000 17557000 39021000 2237300 17219000 39598000 90850000 55659000 41465000 27228000 43353000 32925000 3 3 2 3 3 3 3 3 3 3 3 12318000 27192000 102220 13818000 30090000 20460000 15201000 22989000 16548000 23141000 23274000 11470000 25323000 1272100 15140000 28477000 20491000 16239000 23251000 17014000 22594000 22243000 5 5 2 5 5 5 5 5 5 5 5 12342000000 6202800000 6138700000 16553 489 15195 84311;84312;84313;84314;84315;84316 102006;102007;102008;102009;102010;102011;102012;102013 102011 389;390 8 RVIISAPSADAPMFVMGVNHEKYDNSLK Unmodified 3088.5474 0.54741104 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 2 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 61.268 61.07 5 1.0378E-33 20119 20211116_3429_TMUAki_TMT10x_P_F2 176.68 166.07 20481000 39981000 508620 25085000 36752000 38784000 38854000 18514000 13923000 20241000 29014000 19074000 37251000 2395800 26848000 35323000 38210000 38530000 19899000 15791000 19697000 27522000 5 5 4 5 5 5 5 5 5 5 5 12182000 22686000 246500 13354000 19282000 28678000 28171000 10379000 7076800 10669000 16403000 11345000 21134000 1335100 14512000 18727000 27859000 27457000 11485000 8453400 10408000 15535000 3 3 2 3 3 3 3 3 3 3 3 8298900 17295000 262120 11731000 17470000 10106000 10683000 8135400 6846200 9572000 12611000 7729000 16117000 1060800 12336000 16596000 10351000 11073000 8414000 7337400 9289300 11987000 2 2 2 2 2 2 2 2 2 2 2 5731600000 3386600000 2345000000 16554 489 15195 84317;84318;84319;84320 102014;102015;102016;102017;102018 102015 5 RVIQEGRGELPDFQDGTK Unmodified 2044.0338 0.033766329 66 O00170 AIP AH receptor-interacting protein yes yes 0 0 0 2 By MS/MS By MS/MS 5 0.816 1 1 1 1 2 42.172 42.294 4 5.3012E-06 10458 20211116_3444_TMUAki_TMT10x_S_F5 96.487 64.669 6373800 10835000 149680 13923000 6633100 7201000 4996500 7669800 8991400 7647600 9073000 5935700 10122000 658310 13885000 6327100 7761000 5277400 7773800 8975300 7470000 8749900 5 5 4 5 5 5 5 5 5 5 5 1176900 2198500 44630 2757100 3196700 3543300 1908500 1373500 1793100 1434500 1609200 1096200 2053500 167460 2785000 3035500 3512400 1999700 1507800 1822700 1398500 1558000 1 1 1 1 1 1 1 1 1 1 1 5196900 8636700 105050 11166000 3436300 3657700 3088000 6296400 7198300 6213100 7463800 4839500 8068400 490850 11100000 3291700 4248600 3277800 6266100 7152600 6071500 7191900 4 4 3 4 4 4 4 4 4 4 4 518960000 129300000 389650000 16555 66 15196 84321;84322;84323 102019;102020;102021;102022;102023 102020 5 RVLECLASGIVMPDGSGIYDPCEK Oxidation (M) 2681.2499 0.24990839 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 1 1 By MS/MS 6 0 1 1 74.284 74.21 3 9.896E-07 23766 20211116_3445_TMUAki_TMT10x_S_F6 85.573 76.973 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16556 1576 15197 84324 102024 102024 2133 1 RVLGLVLLR Unmodified 1037.7073 0.70733422 674 P14678;P63162;P14678-2;P14678-3;P63162-2 SNRPB;SNRPN Small nuclear ribonucleoprotein-associated proteins B and B';Small nuclear ribonucleoprotein-associated protein N yes no 0 0 0 1 By MS/MS 8 0 1 1 56.417 56.38 3 4.2153E-06 16198 20211116_3447_TMUAki_TMT10x_S_F8 155.07 72.062 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16557 674 15198 84325 102025 102025 1 RVLGQLHGGPSSCSATGTNR Unmodified 2054.0076 0.007568354 43 CON__P15636 yes yes 0 0 0 1 By MS/MS By MS/MS 3.33 1.49 1 1 1 1 2 5 1 29.957 29.859 3;4 5.5742E-91 6321 20211116_3431_TMUAki_TMT10x_P_F4 316.32 296.31 + 602080 946650 3476.5 978570 1329600 1150100 755630 546010 688180 568360 780340 560580 883440 58601 998610 1260400 1147500 794400 586300 706320 554170 749920 5 5 2 5 5 5 5 5 5 5 5 495240 731630 192.07 792460 1185600 1033600 593730 428160 542770 442930 608170 461080 682920 46162 807740 1121600 1024500 631620 466320 556720 431980 584660 4 4 1 4 4 4 4 4 4 4 4 106840 215020 3284.4 186110 143990 116530 161900 117840 145410 125420 172170 99505 200530 12439 190870 138720 123040 162780 119980 149600 122180 165260 1 1 1 1 1 1 1 1 1 1 1 106640000 94536000 12105000 16558 43 15199 84326;84327;84328;84329;84330;84331 102026;102027;102028;102029;102030 102027 5 RVLLGETGK Unmodified 971.57638 0.57637963 1348 P62280 RPS11 40S ribosomal protein S11 yes yes 0 0 0 1 By MS/MS 1 0 1 1 35.386 35.352 3 0.00027696 10102 20211116_3439_TMUAki_TMT10x_S_F1 120.65 85.7 898710 1420000 11658 1623300 749120 541750 831710 534500 689510 613980 989460 836880 1325800 83279 1625500 721080 618450 834920 546190 718330 596370 945210 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 898710 1420000 11658 1623300 749120 541750 831710 534500 689510 613980 989460 836880 1325800 83279 1625500 721080 618450 834920 546190 718330 596370 945210 1 1 1 1 1 1 1 1 1 1 1 56295000 0 56295000 16559 1348 15200 84332 102031 102031 1 RVLLQASQDENFGNTTPR Unmodified 2045.029 0.029015303 1267 P57740 NUP107 Nuclear pore complex protein Nup107 yes yes 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 41.971 42.193 3 1.7421E-90 12277 20211116_3435_TMUAki_TMT10x_P_F7 327.27 305.95 4159400 6914400 38821 7427800 7472400 8463100 5374500 4736200 5111100 4495600 5505500 3872600 6453800 370570 7556800 7110800 8474100 5553200 4996300 5225100 4400500 5298700 7 7 4 7 7 7 7 7 7 7 7 3632400 6084100 27584 6402700 7076500 8021300 4872200 4143100 4425500 3947300 4801100 3381900 5678300 318240 6533600 6727900 7984600 5043500 4402300 4535100 3863200 4619900 5 5 2 5 5 5 5 5 5 5 5 526940 830230 11237 1025100 395900 441870 502370 593050 685520 548270 704320 490720 775420 52324 1023300 382960 489520 509680 594000 690060 537310 678850 2 2 2 2 2 2 2 2 2 2 2 543960000 440520000 103440000 16560 1267 15201 84333;84334;84335;84336 102032;102033;102034;102035;102036;102037;102038;102039 102036 8 RVLPPNWK Unmodified 1008.5869 0.58688473 1347 P62277 RPS13 40S ribosomal protein S13 yes yes 0 0 0 1 By MS/MS By MS/MS 3.43 0.495 4 3 4 3 40.592 40.605 3 0.00023733 10961 20211116_3442_TMUAki_TMT10x_S_F4 143.89 133.58 15281000 24521000 21772 30889000 24127000 18250000 16326000 13115000 14221000 12682000 18760000 14227000 22905000 1235700 30873000 22928000 19256000 16903000 13581000 14721000 12403000 17956000 8 8 2 8 8 8 8 8 8 8 8 6841100 10777000 6120.3 13623000 17303000 13129000 8893100 6141200 6687200 5821000 8177400 6368900 10066000 602890 13690000 16373000 13248000 9392100 6587000 6952500 5698200 7842300 4 4 1 4 4 4 4 4 4 4 4 8440100 13745000 15651 17266000 6823800 5121800 7433100 6974200 7533800 6860600 10582000 7858200 12839000 632860 17183000 6555400 6008400 7510900 6994000 7768100 6705100 10114000 4 4 1 4 4 4 4 4 4 4 4 895600000 518770000 376830000 16561 1347 15202 84337;84338;84339;84340;84341;84342;84343 102040;102041;102042;102043;102044;102045;102046;102047;102048;102049 102048 10 RVLQALEGLK Unmodified 1125.687 0.68699271 974 P39019 RPS19 40S ribosomal protein S19 yes yes 0 0 0 1 By MS/MS By MS/MS 3.58 2.63 2 4 3 3 6 6 58.517 58.337 2;3 5.7668E-13 17733 20211116_3440_TMUAki_TMT10x_S_F2 198.61 108.86 36866000 66794000 150410 67749000 76318000 86961000 46371000 69826000 62357000 53847000 58951000 34325000 62330000 3588000 69335000 72423000 87020000 49097000 71381000 62617000 53248000 56973000 10 10 5 10 10 10 10 10 10 10 10 24305000 43766000 20771 43952000 63397000 78258000 38458000 45411000 41629000 35883000 38443000 22629000 40839000 2420800 45338000 60152000 76870000 40412000 47544000 42098000 35438000 37184000 7 7 2 7 7 7 7 7 7 7 7 12560000 23028000 129640 23797000 12921000 8702700 7913500 24415000 20728000 17964000 20507000 11696000 21490000 1167200 23997000 12271000 10150000 8685500 23837000 20518000 17810000 19790000 3 3 3 3 3 3 3 3 3 3 3 9367200000 5959200000 3408000000 16562 974 15203 84344;84345;84346;84347;84348;84349;84350;84351;84352;84353;84354;84355 102050;102051;102052;102053;102054;102055;102056;102057;102058;102059;102060;102061 102059 12 RVLQQFADNDVSR Unmodified 1546.7852 0.7852032 1161 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 1 By MS/MS By MS/MS 6.25 0.433 3 1 2 2 38.777 38.97 2;3 1.1266E-42 9179 20211116_3445_TMUAki_TMT10x_S_F6 285.32 242.03 3168200 5414800 42141 6020700 7638600 6980100 4295600 4514900 4526100 3874900 5101200 2950100 5054900 354280 6113600 7242100 6996300 4539200 4695700 4614800 3810800 4903100 6 6 2 6 6 6 6 6 6 6 6 2635800 4490700 42141 4989000 7087700 6540700 3856900 3728300 3734700 3204700 4286000 2454500 4192100 316350 5077600 6717100 6504300 4077400 3916900 3824300 3151500 4117500 3 3 2 3 3 3 3 3 3 3 3 532360 924130 0 1031700 550890 439480 438700 786630 791430 670140 815170 495630 862710 37936 1036000 524980 492040 461770 778790 790550 659290 785630 3 3 0 3 3 3 3 3 3 3 3 306060000 243980000 62081000 16563 1161 15204 84356;84357;84358;84359 102062;102063;102064;102065;102066;102067 102067 6 RVLSGEFQIVNPHLLK Unmodified 1849.0574 0.057402305 791 P23921 RRM1 Ribonucleoside-diphosphate reductase large subunit yes yes 0 0 0 1 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 58.286 57.983 4 4.0654E-15 19312 20211116_3430_TMUAki_TMT10x_P_F3 147.12 126.17 21668000 34703000 369180 33017000 21868000 30225000 21162000 15594000 14493000 15288000 22836000 20178000 32375000 2143300 33760000 20973000 30635000 21296000 16584000 15332000 14944000 21771000 5 5 5 5 5 5 5 5 5 5 5 15066000 23538000 262160 23034000 15683000 24810000 15764000 10601000 10071000 10624000 16043000 14030000 21962000 1502000 23561000 15056000 24846000 15809000 11497000 10707000 10375000 15291000 3 3 3 3 3 3 3 3 3 3 3 6602800 11165000 107020 9983200 6184800 5415000 5398700 4992400 4421400 4664200 6793300 6148700 10413000 641310 10200000 5917000 5788700 5487000 5087500 4625000 4568800 6479800 2 2 2 2 2 2 2 2 2 2 2 3553600000 2145400000 1408200000 16564 791 15205 84360;84361;84362 102068;102069;102070;102071;102072 102069 5 RVLVDVER Unmodified 984.57163 0.5716286 560 P08621;P08621-2;P08621-4 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 0 0 0 1 By MS/MS By MS/MS 3.25 1.39 1 2 1 2 2 7 1 32.798 32.722 2;3 0.0006199 7463 20211116_3431_TMUAki_TMT10x_P_F4 128.27 84.462 2961200 4464700 11076 4593600 4072900 5141700 3447300 3084000 3276900 3215400 3471000 2757200 4166500 262490 4685300 3889700 5158000 3524200 3243400 3348000 3134900 3342300 4 4 1 4 4 4 4 4 4 4 4 2569300 3820400 11076 3970900 3648600 4773600 2999100 2657100 2805800 2775400 2971200 2392300 3565400 231930 4052300 3482400 4766000 3070100 2811900 2868700 2705700 2861100 3 3 1 3 3 3 3 3 3 3 3 391870 644290 0 622750 424320 368040 448230 426930 471120 440040 499810 364850 601110 30554 633020 407300 391970 454120 431490 479300 429220 481260 1 1 0 1 1 1 1 1 1 1 1 487050000 458500000 28550000 16565 560 15206 84363;84364;84365;84366;84367;84368;84369;84370 102073;102074;102075;102076;102077 102074 5 RVLVYGGR Unmodified 918.53993 0.53993454 573 P09417;P09417-2 QDPR Dihydropteridine reductase yes no 0 0 0 1 By MS/MS 4 0 1 1 31.019 31.053 3 0.011839 6776 20211116_3431_TMUAki_TMT10x_P_F4 71.379 46.485 428410 683010 0 669670 561750 669840 464080 355680 420180 383100 521880 398860 637270 34024 684120 535950 675320 474490 378310 432990 373020 500290 1 1 0 1 1 1 1 1 1 1 1 428410 683010 0 669670 561750 669840 464080 355680 420180 383100 521880 398860 637270 34024 684120 535950 675320 474490 378310 432990 373020 500290 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13115000 13115000 0 16566 573 15207 84371 102078 102078 1 RVNAIEHVIIPR Unmodified 1415.8361 0.83611656 3321 Q9Y5K8 ATP6V1D V-type proton ATPase subunit D yes yes 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 38.58 38.571 4 5.8072E-07 11488 20211116_3439_TMUAki_TMT10x_S_F1 120.77 99.264 339030 602270 11726 697050 324190 327470 336450 490640 405890 431330 522310 315750 562330 38828 698880 311870 360060 342790 488840 414020 423710 500250 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 339030 602270 11726 697050 324190 327470 336450 490640 405890 431330 522310 315750 562330 38828 698880 311870 360060 342790 488840 414020 423710 500250 2 2 2 2 2 2 2 2 2 2 2 99700000 0 99700000 16567 3321 15208 84372;84373 102079;102080 102079 2 RVNILSDMHLR Oxidation (M) 1368.7296 0.72960258 1148 P51114;P51114-2;P51114-3 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 0 0 1 1 By MS/MS 1 0 1 1 33.229 33.229 4 0.022068 7290 20211116_3428_TMUAki_TMT10x_P_F1 54.784 39.633 210450 329670 0 293890 455980 447360 225540 216010 229270 190170 247460 195920 307480 16615 304630 431150 441070 240940 230530 233720 186790 238160 1 1 0 1 1 1 1 1 1 1 1 210450 329670 0 293890 455980 447360 225540 216010 229270 190170 247460 195920 307480 16615 304630 431150 441070 240940 230530 233720 186790 238160 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32859000 32859000 0 16568 1148 15209 84374 102081 102081 1532 1 RVNLAIWDTAGQER Unmodified 1627.8431 0.84305243 3165 Q9UL25 RAB21 Ras-related protein Rab-21 yes yes 0 0 0 1 By MS/MS By matching 7.5 0.5 1 1 1 1 49.994 50.269 3 0.079312 15444 20211116_3435_TMUAki_TMT10x_P_F7 37.182 21.293 4135200 7109600 0 7806000 6759600 8695400 5101800 4142200 3451100 3580100 5150400 3849900 6636600 333680 7927500 6436700 8701100 5210600 4424500 3643500 3519700 4915800 1 1 0 1 1 1 1 1 1 1 1 4135200 7109600 0 7806000 6759600 8695400 5101800 4142200 3451100 3580100 5150400 3849900 6636600 333680 7927500 6436700 8701100 5210600 4424500 3643500 3519700 4915800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517200000 323800000 193400000 16569 3165 15210 84375;84376 102082 102082 1 RVNQAIWLLCTGAR Unmodified 1656.8882 0.88822849 1055 P46782 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 6.8 0.748 2 2 1 3 2 55.482 55.882 3 2.1356E-23 17610 20211116_3435_TMUAki_TMT10x_P_F7 185.32 163.69 7318800 12111000 87344 11677000 9306800 9882400 8421200 6761200 5900100 6534700 9085400 6814900 11299000 685930 11916000 8904800 10108000 8510200 7025100 6225700 6391500 8665700 2 2 1 2 2 2 2 2 2 2 2 3499700 5713100 87344 5593900 5307500 6662600 4701000 3506000 2811200 3081200 4539300 3259200 5330400 396870 5731100 5079100 6650600 4741600 3711300 3003900 3026800 4325400 1 1 1 1 1 1 1 1 1 1 1 3819100 6397600 0 6083100 3999300 3219800 3720200 3255200 3088900 3453500 4546000 3555700 5968500 289070 6185100 3825700 3457500 3768600 3313800 3221800 3364700 4340300 1 1 0 1 1 1 1 1 1 1 1 1819400000 1155300000 664080000 16570 1055 15211 84377;84378;84379;84380;84381 102083;102084;102085;102086 102085 4 RVNSASSSNPPAEVDPDTILK Unmodified 2196.1022 0.10223983 2725 Q9BY77;Q9BY77-2 POLDIP3 Polymerase delta-interacting protein 3 yes no 0 0 0 1 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 47.548 47.72 3;4 3.6942E-20 13873 20211116_3442_TMUAki_TMT10x_S_F4 159.14 133.32 4562800 7958800 63582 9025100 5702900 7104100 4426000 6454200 6923000 5757600 6858400 4248900 7430400 453510 9103000 5439900 7341100 4633500 6574100 6931400 5651800 6618000 3 3 3 3 3 3 3 3 3 3 3 2653600 4443300 12708 4646700 4539100 6040800 3569100 3447800 3283800 3189100 3600800 2470800 4146800 258250 4746800 4328700 6009700 3662200 3628600 3364400 3125300 3463700 1 1 1 1 1 1 1 1 1 1 1 1909200 3515500 50874 4378400 1163800 1063300 856850 3006300 3639200 2568500 3257600 1778100 3283600 195260 4356200 1111300 1331400 971320 2945500 3567000 2526500 3154300 2 2 2 2 2 2 2 2 2 2 2 599500000 299320000 300180000 16571 2725 15212 84382;84383;84384 102087;102088;102089;102090 102089 4 RVPELPVIR Unmodified 1077.6659 0.66586334 2819 Q9H6V9;Q9H6V9-2;Q9H6V9-4;Q9H6V9-3 C2orf43 UPF0554 protein C2orf43 yes no 0 0 0 1 By MS/MS 4.5 3.5 1 1 2 43.641 43.443 3 5.7235E-05 10972 20211116_3447_TMUAki_TMT10x_S_F8 100.88 71.92 481630 759520 0 864940 454970 383100 447020 608180 692630 488020 731430 448350 709110 27336 867730 435250 425060 461450 603400 695260 481580 704390 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 481630 759520 0 864940 454970 383100 447020 608180 692630 488020 731430 448350 709110 27336 867730 435250 425060 461450 603400 695260 481580 704390 1 1 0 1 1 1 1 1 1 1 1 48317000 0 48317000 16572 2819 15213 84385;84386 102091;102092 102092 2 RVPPPALSR Unmodified 991.5927 0.59269839 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 1 By MS/MS By MS/MS 1.8 0.748 2 2 1 3 2 28.967 28.835 2;3 5.7033E-05 5440 20211116_3428_TMUAki_TMT10x_P_F1 140.05 140.05 1063600 1855500 15624 1518200 1318700 1640400 1453500 1015400 1179200 1075700 1411100 990360 1730100 98860 1574400 1268300 1649500 1458800 1065800 1219900 1048100 1354000 6 6 3 6 6 6 6 6 6 6 6 425500 748690 0 633610 593310 890300 609300 414240 508010 463250 607600 396120 698170 30174 658350 568810 880440 614070 446660 524780 450410 583050 3 3 0 3 3 3 3 3 3 3 3 638090 1106800 15624 884540 725430 750070 844230 601180 671200 612450 803480 594240 1031900 68686 916070 699510 769070 844770 619090 695100 597690 771000 3 3 3 3 3 3 3 3 3 3 3 84190000 53474000 30716000 16573 1684 15214 84387;84388;84389;84390;84391 102093;102094;102095;102096;102097;102098 102093 6 RVPTGLPFIK Unmodified 1126.6863 0.68626443 285 O60725 ICMT Protein-S-isoprenylcysteine O-methyltransferase yes yes 0 0 0 1 By MS/MS By matching 5 0 2 1 1 53.539 53.729 3 0.0057324 16175 20211116_3433_TMUAki_TMT10x_P_F5 67.153 28.86 1213100 1787400 23874 1978300 2046900 2744500 1460300 1632500 1516600 1350100 1637600 1129700 1668600 134510 2016100 1949400 2723700 1513700 1707500 1544700 1330200 1576000 1 1 1 1 1 1 1 1 1 1 1 1213100 1787400 23874 1978300 2046900 2744500 1460300 1632500 1516600 1350100 1637600 1129700 1668600 134510 2016100 1949400 2723700 1513700 1707500 1544700 1330200 1576000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 649690000 385380000 264310000 16574 285 15215 84392;84393 102099 102099 1 RVPVLGK Unmodified 767.50176 0.50175812 3064 Q9P2J5;Q9P2J5-2;Q9P2J5-3 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 35.385 35.253 3 0.002479 9994 20211116_3429_TMUAki_TMT10x_P_F2 111.04 95.403 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16575 3064 15216 84394;84395;84396 102100;102101;102102 102100 3 RVPVLGSLLNLPGIR Unmodified 1602.9933 0.99334549 3282 Q9Y3E0 GOLT1B Vesicle transport protein GOT1B yes yes 0 0 0 1 By MS/MS 8 0 1 1 75.48 75.374 3 0.00010758 23944 20211116_3447_TMUAki_TMT10x_S_F8 81.419 53.25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16576 3282 15217 84397 102103 102103 1 RVQDLSAGGQGSLTDSGPER Unmodified 2028.9825 0.98245904 981 P40222 TXLNA Alpha-taxilin yes yes 0 0 0 1 By MS/MS 4 0 1 1 35.345 35.37 3 5.4931E-91 8545 20211116_3431_TMUAki_TMT10x_P_F4 316.6 289.39 184400 298610 0 420720 595830 453290 283230 193800 256120 172410 278180 171660 279090 17316 421070 563210 453950 302800 209500 262530 169270 267660 1 1 0 1 1 1 1 1 1 1 1 184400 298610 0 420720 595830 453290 283230 193800 256120 172410 278180 171660 279090 17316 421070 563210 453950 302800 209500 262530 169270 267660 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 104700000 104700000 0 16577 981 15218 84398 102104 102104 1 RVQFGVLSPDELK Unmodified 1486.8144 0.81437807 796 P24928;P24928-2 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 56.875 57.4 3 0.00052712 18321 20211116_3435_TMUAki_TMT10x_P_F7 74.537 51.161 7219300 12554000 121110 13826000 7726200 6978000 6772100 8306000 8341800 8307700 9558500 6722800 11719000 718500 13913000 7391600 7561000 6967700 8378000 8460800 8113700 9183100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7219300 12554000 121110 13826000 7726200 6978000 6772100 8306000 8341800 8307700 9558500 6722800 11719000 718500 13913000 7391600 7561000 6967700 8378000 8460800 8113700 9183100 2 2 2 2 2 2 2 2 2 2 2 483820000 0 483820000 16578 796 15219 84399;84400 102105;102106;102107 102105 3 RVQSCPDPAVYGVVQSGDHIGR Unmodified 2396.1655 0.16552556 2748 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O yes yes 0 0 0 1 By MS/MS 6 0 1 1 38.971 38.976 4 6.8873E-05 9241 20211116_3434_TMUAki_TMT10x_P_F6 65.425 56.142 283990 504750 2546.8 569980 775030 695230 384570 383650 365900 294650 448200 264440 471230 32795 578740 733480 693530 409930 403130 375980 291440 429810 1 1 1 1 1 1 1 1 1 1 1 283990 504750 2546.8 569980 775030 695230 384570 383650 365900 294650 448200 264440 471230 32795 578740 733480 693530 409930 403130 375980 291440 429810 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 51477000 51477000 0 16579 2748 15220 84401 102108 102108 1 RVQTPLLR Unmodified 981.60835 0.60834846 3118 Q9UHD8-5;Q9UHD8;Q9UHD8-2;Q9UHD8-7 SEPT9 Septin-9 yes no 0 0 0 1 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 32.699 32.545 3 0.0002411 10007 20211116_3441_TMUAki_TMT10x_S_F3 145.72 100.59 678640 1038100 7364.6 1082400 993690 890560 876300 671610 731050 639810 782490 631930 968820 67540 1098200 950290 914150 890510 692940 751900 626180 753250 2 2 2 2 2 2 2 2 2 2 2 363810 509600 1474.2 551950 605630 606030 451100 339570 366460 332790 415140 338750 475670 34923 560900 576910 608060 463030 358490 378240 325300 398970 1 1 1 1 1 1 1 1 1 1 1 314830 528500 5890.4 530440 388060 284530 425210 332040 364590 307020 367350 293180 493150 32617 537320 373380 306090 427490 334450 373660 300880 354280 1 1 1 1 1 1 1 1 1 1 1 73477000 43086000 30390000 16580 3118 15221 84402;84403;84404 102109;102110 102110 2 RVQVDVK Unmodified 842.4974 0.49740102 1615 Q13263;Q13263-2 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 31.551 31.534 3 0.01444 7297 20211116_3433_TMUAki_TMT10x_P_F5 82.426 27.814 3370800 4938900 156890 5275700 2978300 4631700 3080600 2078100 2567400 2766800 3911400 3139700 4609800 420180 5348700 2867800 4700900 3103600 2262300 2682100 2673900 3731600 1 1 1 1 1 1 1 1 1 1 1 3370800 4938900 156890 5275700 2978300 4631700 3080600 2078100 2567400 2766800 3911400 3139700 4609800 420180 5348700 2867800 4700900 3103600 2262300 2682100 2673900 3731600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 79297000 79297000 0 16581 1615 15222 84405;84406 102111 102111 1 RVREEEIEVDSR Unmodified 1515.7641 0.76413341 1740 Q14978;Q14978-2;Q14978-3 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 0 0 0 2 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 28.863 28.812 3 6.8426E-07 7095 20211116_3429_TMUAki_TMT10x_P_F2 124.45 58.185 269250 362530 613.88 378680 372400 362820 241930 221080 235260 199430 320260 250650 338340 17629 384940 353390 367410 252020 231280 242650 195670 306310 3 3 1 3 3 3 3 3 3 3 3 201620 243310 0 271620 296590 292240 181250 160350 179660 153740 243710 187670 227140 11336 275410 281050 293480 189830 169490 185110 150420 233120 2 2 0 2 2 2 2 2 2 2 2 67632 119220 613.88 107060 75807 70573 60682 60727 55606 45695 76543 62976 111200 6293.7 109530 72345 73924 62186 61790 57534 45247 73190 1 1 1 1 1 1 1 1 1 1 1 24829000 20469000 4359600 16582 1740 15223 84407;84408;84409 102112;102113;102114 102113 3 RVSAIVEQSWNDS Unmodified 1489.7161 0.71612059 1396 P63146 UBE2B Ubiquitin-conjugating enzyme E2 B yes yes 0 0 0 1 By MS/MS 4 0 1 1 50.694 50.801 2 5.7435E-05 15141 20211116_3442_TMUAki_TMT10x_S_F4 86.898 69.167 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16583 1396 15224 84410 102115 102115 1 RVSAVEEVR Unmodified 1043.5724 0.57235688 3147 Q9UJY4 GGA2 ADP-ribosylation factor-binding protein GGA2 yes yes 0 0 0 1 By MS/MS 3 0 1 1 28.336 28.052 3 0.00062942 8329 20211116_3441_TMUAki_TMT10x_S_F3 102.53 65.187 102120 190020 51.96 173720 124640 108560 128610 90167 89460 100490 142630 95083 177250 8830.1 177400 119610 114200 129030 92913 94610 97720 135950 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 102120 190020 51.96 173720 124640 108560 128610 90167 89460 100490 142630 95083 177250 8830.1 177400 119610 114200 129030 92913 94610 97720 135950 1 1 1 1 1 1 1 1 1 1 1 7033400 0 7033400 16584 3147 15225 84411 102116 102116 1 RVSFGVDEEERVR Unmodified 1576.7958 0.79576789 2641 Q9BRQ6 CHCHD6 MICOS complex subunit MIC25 yes yes 0 0 0 2 By MS/MS By matching 3.5 0.5 1 1 1 1 33.293 33.316 4 0.04834 9330 20211116_3430_TMUAki_TMT10x_P_F3 47.037 24.03 121460 180330 12783 216570 155740 219560 158630 151010 152190 137840 197510 113190 168400 22463 218430 150180 221950 160550 156600 156720 135160 189130 1 1 1 1 1 1 1 1 1 1 1 121460 180330 12783 216570 155740 219560 158630 151010 152190 137840 197510 113190 168400 22463 218430 150180 221950 160550 156600 156720 135160 189130 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2734800 1268400 1466300 16585 2641 15226 84412;84413 102117 102117 1 RVSISEGDDKIEYR Unmodified 1665.8322 0.83221298 765 P22087 FBL rRNA 2'-O-methyltransferase fibrillarin yes yes 0 0 0 2 By MS/MS By MS/MS 4.14 0.833 2 2 3 4 3 36.796 36.812 3;4 4.8565E-30 9071 20211116_3431_TMUAki_TMT10x_P_F4 216.01 188.33 10174000 15470000 92048 18227000 18220000 16276000 10746000 8906200 9996700 9426300 12770000 9473100 14446000 1013000 18370000 17286000 16536000 11268000 9442700 10301000 9184800 12233000 6 6 3 6 6 6 6 6 6 6 6 8002700 12151000 36039 14464000 15948000 14400000 8477400 6851500 7746000 7240700 9919700 7451400 11347000 784860 14592000 15105000 14504000 8967000 7358800 7989400 7055600 9501900 3 3 1 3 3 3 3 3 3 3 3 2170900 3319200 56009 3762300 2272300 1876000 2268900 2054700 2250700 2185700 2850200 2021700 3098800 228110 3778700 2181800 2031500 2301100 2084000 2311700 2129300 2730900 3 3 2 3 3 3 3 3 3 3 3 4149000000 2922900000 1226100000 16586 765 15227 84414;84415;84416;84417;84418;84419;84420 102118;102119;102120;102121;102122;102123 102118 6 RVSVCAETYNPDEEEEDTDPR Unmodified 2510.0503 0.050340189 660 P13861;P13861-2 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 37.823 37.714 3 6.3497E-35 9066 20211116_3428_TMUAki_TMT10x_P_F1 189.07 180.78 421530 620730 3524.5 875160 781190 809810 466180 496120 561890 436150 518520 392500 580150 41853 873860 741240 821970 492300 518460 565900 428430 501540 4 4 2 4 4 4 4 4 4 4 4 306130 445460 3524.5 629040 708450 719900 374430 366030 426780 325090 366630 285050 416350 32983 630120 671030 719830 398880 388790 429750 319180 355540 3 3 2 3 3 3 3 3 3 3 3 115400 175270 0 246110 72742 89919 91752 130090 135100 111060 151890 107450 163810 8870.2 243740 70220 102140 93416 129670 136140 109250 146000 1 1 0 1 1 1 1 1 1 1 1 201270000 149090000 52182000 16587 660 15228 84421;84422;84423 102124;102125;102126;102127 102124 4 RVTDIIMQK Oxidation (M) 1118.6118 0.61177885 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4;Q7Z4S6-6 KIF21A Kinesin-like protein KIF21A yes no 0 0 1 1 By MS/MS By MS/MS 8 0 4 2 2 39.984 40.219 3 0.015143 10167 20211116_3436_TMUAki_TMT10x_P_F8 63.216 31.282 878780 1339900 17492 1480900 1666800 1846000 1045700 1040100 1062500 1031900 1192900 818360 1250800 100190 1506300 1583600 1840000 1093700 1098000 1084800 1008100 1146700 1 1 1 1 1 1 1 1 1 1 1 878780 1339900 17492 1480900 1666800 1846000 1045700 1040100 1062500 1031900 1192900 818360 1250800 100190 1506300 1583600 1840000 1093700 1098000 1084800 1008100 1146700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 91020000 52877000 38144000 16588 2082 15229 84424;84425;84426;84427 102128;102129;102130 102129 2589 3 RVTFEADENENITVVK Unmodified 1862.9374 0.93740633 3003 Q9NX63 CHCHD3 MICOS complex subunit MIC19 yes yes 0 0 0 1 By MS/MS By MS/MS 4.14 0.833 2 2 3 4 3 49.42 49.54 3 8.7488E-11 13376 20211116_3444_TMUAki_TMT10x_S_F5 134.14 112.37 12711000 20301000 64370 22504000 17603000 20966000 14195000 15232000 16318000 13733000 16539000 11836000 18951000 1116600 22779000 16793000 21325000 14642000 15732000 16516000 13474000 15948000 6 6 4 6 6 6 6 6 6 6 6 8234100 12433000 49456 13966000 12639000 16154000 9929800 9580200 10212000 8581800 10157000 7666900 11607000 758810 14172000 12052000 16173000 10223000 10042000 10374000 8422600 9799300 4 4 3 4 4 4 4 4 4 4 4 4477300 7868000 14913 8538100 4964100 4812400 4264800 5652200 6106800 5151100 6383000 4168600 7344200 357740 8607200 4740900 5151200 4419500 5689400 6141800 5051500 6148900 2 2 1 2 2 2 2 2 2 2 2 1554700000 698590000 856100000 16589 3003 15230 84428;84429;84430;84431;84432;84433;84434 102131;102132;102133;102134;102135;102136;102137;102138 102138 8 RVTIMPK Oxidation (M) 859.49496 0.49495818 1421 P68431;Q71DI3;Q16695;P84243;Q6NXT2 HIST1H3A;HIST2H3A;HIST3H3;H3F3A;H3F3C Histone H3.1;Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.3C yes no 0 0 1 1 By MS/MS By MS/MS 1.67 0.745 3 2 1 2 4 29.839 29.786 2;3 0.013499 6375 20211116_3428_TMUAki_TMT10x_P_F1 84.916 34.284 41528000 70689000 766670 64544000 59153000 45949000 52859000 40468000 46705000 44927000 56852000 38671000 65938000 4302300 66001000 56600000 47834000 53755000 41555000 48144000 43694000 54529000 8 8 5 8 8 8 8 8 8 8 8 3464800 5375200 24761 5129600 4871200 7518200 2613700 2810000 3330600 3318400 4207700 3226200 5014700 328000 5286100 4615400 7405900 2791400 3109900 3388100 3220000 4031900 3 3 2 3 3 3 3 3 3 3 3 38063000 65314000 741910 59414000 54282000 38431000 50245000 37658000 43375000 41609000 52644000 35445000 60923000 3974300 60715000 51985000 40428000 50964000 38445000 44756000 40474000 50497000 5 5 3 5 5 5 5 5 5 5 5 14988000000 1437900000 13550000000 16590 1421 15231 84435;84436;84437;84438;84439;84440 102139;102140;102141;102142;102143;102144;102145;102146 102139 1914 8 RVTIMPK Unmodified 843.50004 0.50004356 1421 P68431;Q71DI3;Q16695;P84243;Q6NXT2 HIST1H3A;HIST2H3A;HIST3H3;H3F3A;H3F3C Histone H3.1;Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.3C yes no 0 0 0 1 By MS/MS By MS/MS 3.41 1.5 2 4 5 8 2 1 11 11 31.47 31.444 2;3 0.0024618 9472 20211116_3429_TMUAki_TMT10x_P_F2 113.91 31.6 387570000 583280000 2587100 675930000 517250000 354940000 442870000 134170000 99449000 164850000 398780000 360850000 544610000 32435000 678210000 494010000 376430000 442410000 148480000 126820000 159740000 375420000 19 19 12 19 18 19 18 19 19 19 19 184730000 254510000 391980 301950000 256870000 234330000 209240000 61824000 45332000 71227000 173320000 171980000 237660000 13145000 303670000 244910000 239020000 209590000 71846000 57831000 69177000 163240000 9 9 5 9 8 9 8 9 9 9 9 202840000 328770000 2195200 373980000 260380000 120610000 233630000 72350000 54118000 93625000 225450000 188880000 306950000 19291000 374540000 249100000 137410000 232820000 76633000 68990000 90563000 212180000 10 10 7 10 10 10 10 10 10 10 10 72787000000 37319000000 35467000000 16591 1421 15231 84441;84442;84443;84444;84445;84446;84447;84448;84449;84450;84451;84452;84453;84454;84455;84456;84457;84458;84459;84460;84461;84462 102147;102148;102149;102150;102151;102152;102153;102154;102155;102156;102157;102158;102159;102160;102161;102162;102163;102164;102165;102166;102167;102168;102169;102170 102150 24 RVTLELGGK Unmodified 971.57638 0.57637963 500;880;385 O94788;O94788-4;O94788-2;O94788-3;P00352;P47895;P05091;P05091-2;P30837 ALDH1A2;ALDH1A1;ALDH1A3;ALDH2;ALDH1B1 Retinal dehydrogenase 2;Retinal dehydrogenase 1;Aldehyde dehydrogenase family 1 member A3;Aldehyde dehydrogenase, mitochondrial;Aldehyde dehydrogenase X, mitochondrial no no 0 0 0 1 By MS/MS By MS/MS 5.29 2.81 2 2 1 2 4 3 39.615 39.767 3 0.00045043 9327 20211116_3447_TMUAki_TMT10x_S_F8 111.73 77.422 13347000 19854000 15645 21362000 17329000 17040000 12967000 9869400 9778100 11152000 14562000 12427000 18531000 1035600 21622000 16498000 17465000 13282000 10435000 10257000 10838000 13900000 6 6 1 6 6 6 6 6 6 6 6 9066900 13148000 15645 14239000 12681000 13455000 8550400 6842300 6575300 7673300 9829000 8441400 12272000 699870 14438000 12049000 13607000 8827800 7315400 6891100 7459900 9381000 3 3 1 3 3 3 3 3 3 3 3 4280500 6705900 0 7123100 4647700 3584600 4416200 3027100 3202700 3478200 4733300 3985400 6258900 335750 7184400 4449000 3857500 4454100 3119400 3365600 3378400 4518700 3 3 0 3 3 3 3 3 3 3 3 833380000 533170000 300210000 16592 385;500;880 15232 84463;84464;84465;84466;84467;84468;84469 102171;102172;102173;102174;102175;102176 102176 6 RVTYVVLDEADR Unmodified 1434.7467 0.74669243 2049 Q7L014 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 0 0 0 1 By MS/MS By matching 3.5 0.5 1 1 1 1 40.963 41.095 3 9.6065E-08 12237 20211116_3430_TMUAki_TMT10x_P_F3 136.83 110.71 330830 499460 27263 574530 657930 647990 471780 452530 372340 380280 450490 308240 466330 57418 581910 627830 651210 485200 467800 385920 374380 432150 1 1 1 1 1 1 1 1 1 1 1 330830 499460 27263 574530 657930 647990 471780 452530 372340 380280 450490 308240 466330 57418 581910 627830 651210 485200 467800 385920 374380 432150 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 313090000 73697000 239390000 16593 2049 15233 84470;84471 102177 102177 1 RVVAEPVELAQEFR Unmodified 1641.8839 0.88385462 338 O75489 NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 53.771 53.854 3 6.8909E-19 16374 20211116_3442_TMUAki_TMT10x_S_F4 165.45 133.39 10961000 17468000 365150 19321000 13659000 16492000 11156000 12088000 11789000 10654000 14351000 10209000 16306000 1286800 19537000 13056000 16876000 11467000 12469000 12056000 10464000 13765000 5 5 5 5 5 5 5 5 5 5 5 6392700 9805700 199130 10943000 9122700 12570000 6971100 6865100 6899200 6182900 8479900 5953800 9154000 753820 11107000 8705300 12577000 7181400 7247500 7078000 6066600 8131300 3 3 3 3 3 3 3 3 3 3 3 4568300 7662300 166020 8378300 4535900 3921700 4185300 5222500 4889700 4470800 5871500 4254800 7152400 533020 8430000 4350500 4299300 4285500 5221700 4978500 4397400 5633700 2 2 2 2 2 2 2 2 2 2 2 1827400000 1161400000 666040000 16594 338 15234 84472;84473;84474;84475;84476 102178;102179;102180;102181;102182 102181 5 RVVAEPVELAQEFRK Unmodified 1769.9788 0.97881763 338 O75489 NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes yes 0 0 0 2 By MS/MS By MS/MS 7 0 2 1 1 50.528 51.11 4 1.3111E-06 15780 20211116_3435_TMUAki_TMT10x_P_F7 114.01 87.89 3251600 5513000 66346 5954000 4278500 4062300 3187400 3173800 3014300 2889800 4054800 3028100 5145800 345790 6014600 4079000 4235100 3284800 3263300 3111000 2834000 3879300 2 2 2 2 2 2 2 2 2 2 2 1862100 2911300 43645 3141000 2926500 2990000 2000000 1687800 1645600 1618400 2192700 1734100 2717400 209960 3185900 2785400 3026000 2066200 1779700 1709000 1583500 2098300 1 1 1 1 1 1 1 1 1 1 1 1389500 2601700 22701 2813000 1352000 1072300 1187400 1486100 1368700 1271400 1862100 1294000 2428500 135830 2828700 1293600 1209100 1218600 1483600 1402000 1250500 1781000 1 1 1 1 1 1 1 1 1 1 1 544570000 301030000 243540000 16595 338 15235 84477;84478 102183;102184 102183 2 RVVVPELSAGVASR Unmodified 1438.8256 0.82561145 2316 Q8WWQ0 PHIP PH-interacting protein yes yes 0 0 0 1 By MS/MS By MS/MS 3.33 3.3 2 1 1 2 43.106 43.007 3 7.5708E-14 11146 20211116_3428_TMUAki_TMT10x_P_F1 147.51 132.36 1746000 2870200 2106.3 3294800 3019200 2972600 1953000 2240400 2165900 1874600 2544500 1625700 2679800 164550 3326400 2868300 3031700 2043400 2303900 2207500 1845900 2442900 2 2 2 2 2 2 2 2 2 2 2 1030400 1739800 391.22 1897000 2310700 2417000 1393500 1342700 1257500 1097100 1509000 959400 1624000 103720 1932000 2192600 2406000 1457300 1412100 1294200 1081600 1447900 1 1 1 1 1 1 1 1 1 1 1 715620 1130500 1715.1 1397700 708460 555650 559500 897670 908300 777530 1035500 666320 1055800 60828 1394400 675670 625690 586110 891830 913290 764320 995000 1 1 1 1 1 1 1 1 1 1 1 159910000 95942000 63970000 16596 2316 15236 84479;84480;84481 102185;102186;102187 102185 3 RVVYPLEK Unmodified 1002.5862 0.58621603 294 O60832;O60832-2 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 0 0 0 1 By MS/MS 7.5 0.5 1 1 2 38.279 38.634 3 0.013786 9435 20211116_3436_TMUAki_TMT10x_P_F8 67.881 38.071 3197100 4953300 159450 5023200 4920000 7646500 2507700 3208700 3166600 3199900 4093800 2978000 4622200 437790 5158700 4666500 7528200 2690200 3486100 3225500 3125600 3920400 2 2 2 2 2 2 2 2 2 2 2 3197100 4953300 159450 5023200 4920000 7646500 2507700 3208700 3166600 3199900 4093800 2978000 4622200 437790 5158700 4666500 7528200 2690200 3486100 3225500 3125600 3920400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 177160000 177160000 0 16597 294 15237 84482;84483 102188;102189 102189 2 RVYATILNAGTNTDGFK Unmodified 1839.9479 0.94791144 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 56.414 56.123 3 1.1364E-10 16787 20211116_3440_TMUAki_TMT10x_S_F2 122.68 104.09 61169000 86654000 436200 133050000 67588000 50708000 44756000 55013000 61917000 48439000 73067000 56955000 81031000 5207500 131220000 64236000 56833000 47123000 55519000 62635000 47579000 70140000 6 6 5 6 6 6 6 6 6 6 6 18255000 23823000 0 36884000 34758000 26136000 15716000 14043000 15195000 10711000 17807000 16995000 22279000 1384400 36545000 32825000 27017000 16921000 14789000 15574000 10598000 17097000 1 1 0 1 1 1 1 1 1 1 1 42914000 62831000 436200 96162000 32830000 24572000 29040000 40970000 46722000 37728000 55260000 39960000 58752000 3823200 94676000 31410000 29817000 30202000 40731000 47061000 36981000 53043000 5 5 5 5 5 5 5 5 5 5 5 4483500000 1535100000 2948400000 16598 1092 15238 84484;84485;84486;84487 102190;102191;102192;102193;102194;102195 102193 6 RVYATILNAGTNTDGFKEQGVTFPSGDIQEQLIR Unmodified 3737.9013 0.90130218 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 2 By MS/MS By MS/MS 4.67 3.35 2 1 3 2 4 73.03 72.945 4;5 3.5609E-104 22958 20211116_3447_TMUAki_TMT10x_S_F8 272.46 260.68 20275000 37449000 186240 25064000 29386000 30264000 25409000 26851000 25497000 27845000 27307000 18877000 34898000 1679200 26522000 28068000 30433000 25984000 27503000 25999000 27154000 26286000 11 11 4 11 11 11 11 11 11 11 11 4216200 7183100 47139 4532300 4139100 8666900 5276800 5142100 4594300 5392600 5240900 3925800 6692600 361330 4872800 3998200 8495000 5271900 5413600 4726800 5256400 5035700 2 2 1 2 2 2 2 2 2 2 2 16059000 30266000 139100 20531000 25246000 21597000 20132000 21709000 20903000 22452000 22067000 14951000 28205000 1317900 21649000 24070000 21938000 20712000 22089000 21273000 21897000 21251000 9 9 3 9 9 9 9 9 9 9 9 11214000000 4886600000 6327400000 16599 1092 15239 84488;84489;84490;84491;84492;84493 102196;102197;102198;102199;102200;102201;102202;102203;102204;102205;102206 102204 11 RWEVADLQPQLK Unmodified 1481.7991 0.79906235 774 P22695 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes yes 0 0 0 1 By MS/MS 7 0 1 1 54.696 55.416 3 0.00010741 17503 20211116_3435_TMUAki_TMT10x_P_F7 96.103 62.878 4805100 7604900 48530 7842200 6848900 8983100 6022700 4917300 4726400 4497000 6191500 4474400 7097000 472230 8000600 6549200 8989600 6112200 5192200 4917000 4409400 5927400 1 1 1 1 1 1 1 1 1 1 1 4805100 7604900 48530 7842200 6848900 8983100 6022700 4917300 4726400 4497000 6191500 4474400 7097000 472230 8000600 6549200 8989600 6112200 5192200 4917000 4409400 5927400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 570970000 570970000 0 16600 774 15240 84494 102207 102207 1 RWIYEDVER Unmodified 1264.62 0.62003536 252 O43852;O43852-3;O43852-10;O43852-6;O43852-5;O43852-13;O43852-14;O43852-11 CALU Calumenin yes no 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 42.587 42.674 3 0.0072576 11797 20211116_3442_TMUAki_TMT10x_S_F4 66.262 36.455 1131300 1893400 0 2203900 3014700 2917800 1748400 1454000 1578000 1368500 1683800 1053300 1767900 116820 2237000 2858500 2895500 1834400 1549600 1616600 1340100 1621100 1 1 0 1 1 1 1 1 1 1 1 1131300 1893400 0 2203900 3014700 2917800 1748400 1454000 1578000 1368500 1683800 1053300 1767900 116820 2237000 2858500 2895500 1834400 1549600 1616600 1340100 1621100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 121200000 121200000 0 16601 252 15241 84495;84496 102208;102209 102209 2 RWLLLCNPGLADTIVEK Unmodified 1997.0768 0.076817118 620 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 1 By MS/MS By MS/MS 2 0 3 1 2 75.728 75.648 3 7.3519E-36 24684 20211116_3440_TMUAki_TMT10x_S_F2 207.39 156.2 34334000 51264000 218960 51081000 30168000 42488000 36610000 17186000 13807000 20590000 31430000 31968000 47834000 2693100 51996000 29083000 43246000 36093000 18853000 15669000 19969000 29774000 6 6 2 6 6 6 6 6 6 6 6 31150000 45858000 207870 45868000 27022000 39475000 32716000 15325000 12356000 18380000 28134000 29003000 42790000 2419400 46696000 26046000 40066000 32257000 16892000 14020000 17825000 26651000 5 5 1 5 5 5 5 5 5 5 5 3183700 5406000 11094 5213500 3146700 3013000 3894900 1861500 1451300 2209200 3296500 2964400 5043600 273770 5299300 3036700 3179300 3836000 1961200 1648900 2143300 3122900 1 1 1 1 1 1 1 1 1 1 1 1899400000 1057700000 841690000 16602 620 15242 84497;84498;84499 102210;102211;102212;102213;102214;102215;102216 102215 7 RWQLSVATEQPELEGPR Unmodified 1995.0174 0.017387984 2918 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 52.275 52.43 3 5.6484E-44 14506 20211116_3444_TMUAki_TMT10x_S_F5 236.75 214.39 10970000 19609000 80492 20887000 16689000 19791000 12940000 15566000 15055000 13973000 15987000 10215000 18302000 1020200 21201000 15910000 20134000 13387000 15992000 15256000 13712000 15394000 6 6 4 6 6 6 6 6 6 6 6 5789700 10073000 26594 10425000 11430000 14877000 8642200 8148800 7882700 7261500 8196700 5390600 9400800 539400 10677000 10888000 14730000 8888400 8598100 8063700 7128500 7897300 3 3 1 3 3 3 3 3 3 3 3 5180500 9535500 53897 10462000 5258900 4913700 4297600 7416900 7172100 6711100 7790800 4823900 8901100 480830 10524000 5021600 5404200 4498500 7393500 7192600 6583500 7496300 3 3 3 3 3 3 3 3 3 3 3 985490000 524610000 460880000 16603 2918 15243 84500;84501;84502;84503 102217;102218;102219;102220;102221;102222 102220 6 RYAHVVLR Unmodified 1012.593 0.59303274 1345 P62269 RPS18 40S ribosomal protein S18 yes yes 0 0 0 1 By matching By MS/MS 2.5 0.5 1 1 1 1 29.907 29.661 3 0.0056766 8942 20211116_3441_TMUAki_TMT10x_S_F3 82.452 27.903 180070 289870 0 275320 224000 186240 236450 174030 173540 196520 239240 167660 270420 15261 280570 215080 194950 237240 178240 181630 191010 228750 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 180070 289870 0 275320 224000 186240 236450 174030 173540 196520 239240 167660 270420 15261 280570 215080 194950 237240 178240 181630 191010 228750 1 1 0 1 1 1 1 1 1 1 1 8158000 2343200 5814800 16604 1345 15244 84504;84505 102223 102223 1 RYAICSALAASALPALVMSK Oxidation (M) 2108.1122 0.11221635 953 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 1 1 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 72.915 72.99 3 5.9349E-08 25210 20211116_3446_TMUAki_TMT10x_S_F7 101.38 83.894 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16605 953 15245 84506;84507 102224;102225 102225 1210 2 RYAVIGADLR Unmodified 1132.6353 0.63529149 3133 Q9UIC8;Q9UIC8-2 LCMT1 Leucine carboxyl methyltransferase 1 yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 36.767 37.179 3 0.00021374 8322 20211116_3447_TMUAki_TMT10x_S_F8 111.33 81.861 1784500 2699000 15101 3169900 2684100 2421600 1947600 1686000 1898200 1742800 2364300 1661600 2520200 173240 3189300 2555900 2496600 2012500 1753000 1949800 1699800 2266300 5 5 4 5 5 5 5 5 5 5 5 947310 1383600 4883.1 1626900 1873600 1738400 1105600 837140 960720 894990 1178200 882060 1291900 94683 1644200 1777300 1743800 1157100 898360 991420 871710 1129800 3 3 2 3 3 3 3 3 3 3 3 837180 1315500 10218 1543000 810540 683160 842060 848840 937460 847790 1186100 779570 1228300 78557 1545100 778590 752710 855450 854650 958350 828040 1136500 2 2 2 2 2 2 2 2 2 2 2 109950000 79832000 30117000 16606 3133 15246 84508;84509;84510 102226;102227;102228;102229;102230 102230 5 RYDDPEVQK Unmodified 1148.5462 0.54620171 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 1 By MS/MS 4 0 1 1 31.756 31.785 3 9.0817E-05 7088 20211116_3431_TMUAki_TMT10x_P_F4 136.96 94.138 814180 1334600 25222 1205900 1249800 1256500 1007300 552400 702890 592240 920330 758270 1244800 97108 1240000 1193800 1261100 1025000 598370 736110 576770 881070 1 1 1 1 1 1 1 1 1 1 1 814180 1334600 25222 1205900 1249800 1256500 1007300 552400 702890 592240 920330 758270 1244800 97108 1240000 1193800 1261100 1025000 598370 736110 576770 881070 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 51350000 51350000 0 16607 972 15247 84511 102231 102231 1 RYDEIVK Unmodified 921.49198 0.4919813 1520 Q05639 EEF1A2 Elongation factor 1-alpha 2 yes yes 0 0 0 1 By MS/MS 4 0 1 1 34.953 34.977 3 0.027778 8386 20211116_3431_TMUAki_TMT10x_P_F4 69.628 31.816 1050100 1648400 3645.2 1739100 1575000 1533600 1079300 734000 782820 747140 1205500 977770 1538400 97809 1764700 1498000 1557000 1111500 787020 824360 729160 1149800 1 1 1 1 1 1 1 1 1 1 1 1050100 1648400 3645.2 1739100 1575000 1533600 1079300 734000 782820 747140 1205500 977770 1538400 97809 1764700 1498000 1557000 1111500 787020 824360 729160 1149800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 64222000 64222000 0 16608 1520 15248 84512 102232 102232 1 RYDLEQGLGDLLTER Unmodified 1776.9006 0.90062689 1950 Q5VTR2 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 0 0 0 1 By MS/MS 4 0 1 1 68.285 68.106 3 0.00033646 22291 20211116_3442_TMUAki_TMT10x_S_F4 68.883 55.682 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16609 1950 15249 84513 102233 102233 1 RYDQDLCYTDILFTEQER Unmodified 2364.0692 0.069225137 1757 Q15029;Q15029-2;Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 1 By MS/MS By MS/MS 2.75 0.829 2 1 1 1 3 67.022 66.731 3 1.9796E-23 24019 20211116_3441_TMUAki_TMT10x_S_F3 164.97 155.31 8584800 15492000 80716 14800000 10458000 11651000 10596000 8734200 8881800 9328500 11476000 7993700 14453000 792200 15100000 10035000 11998000 10688000 9045300 9202800 9086200 10990000 4 4 3 4 4 4 4 4 4 4 4 2474900 4379800 0 4001600 2930400 4816700 3104000 2152900 2271600 2530700 3287800 2304200 4085400 190570 4121200 2812800 4796800 3113700 2334600 2383500 2456100 3140200 1 1 0 1 1 1 1 1 1 1 1 6109900 11112000 80716 10799000 7527500 6834500 7492500 6581300 6610200 6797700 8188500 5689500 10368000 601630 10979000 7221800 7201400 7574400 6710700 6819300 6630100 7850300 3 3 3 3 3 3 3 3 3 3 3 2089700000 804470000 1285200000 16610 1757 15250 84514;84515;84516;84517 102234;102235;102236;102237 102237 4 RYEEELEINDFPQTAR Unmodified 2008.949 0.94903365 2049 Q7L014 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 50.558 50.451 3 6.9945E-36 15711 20211116_3429_TMUAki_TMT10x_P_F2 213.71 198.51 23725000 38272000 248170 40543000 32214000 35560000 27153000 25802000 25846000 25288000 31096000 22091000 35721000 2094500 41126000 30767000 36314000 27767000 26710000 26537000 24719000 29835000 13 13 9 13 13 13 13 13 13 13 13 15771000 24698000 185830 25816000 24674000 29515000 19996000 17120000 16912000 16109000 20085000 14685000 23050000 1503700 26313000 23545000 29561000 20432000 18001000 17453000 15775000 19277000 8 8 6 8 8 8 8 8 8 8 8 7954600 13574000 62335 14727000 7539800 6045100 7157300 8681900 8933500 9179300 11012000 7406700 12671000 590810 14813000 7221200 6753100 7334900 8709000 9084400 8944500 10558000 5 5 3 5 5 5 5 5 5 5 5 6072500000 3674700000 2397800000 16611 2049 15251 84518;84519;84520;84521;84522;84523;84524;84525 102238;102239;102240;102241;102242;102243;102244;102245;102246;102247;102248;102249;102250 102241 13 RYEEIVK Unmodified 935.50763 0.50763136 1416 P68104;Q5VTE0 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 0 0 0 1 By MS/MS By MS/MS 4.25 0.829 1 1 2 2 2 33.856 33.834 3 0.00079624 8293 20211116_3433_TMUAki_TMT10x_P_F5 137.9 45.434 7084200 11259000 16734 11231000 6289400 6133900 4754500 2518200 2934200 2683700 6428300 6596000 10506000 564080 11383000 5991200 6481900 4846600 2747700 3188700 2614200 6093000 4 4 3 4 4 4 4 4 4 4 4 6243000 9815300 3106.6 9861900 5502100 5443300 3862000 1765600 2074700 1949700 5348000 5812700 9158900 482400 9991400 5232800 5735200 3947800 1986300 2305000 1896600 5057700 2 2 1 2 2 2 2 2 2 2 2 841160 1443500 13628 1369000 787260 690530 892570 752540 859580 734040 1080300 783310 1346600 81684 1391700 758340 746710 898850 761440 883750 717660 1035300 2 2 2 2 2 2 2 2 2 2 2 330930000 259120000 71812000 16612 1416 15252 84526;84527;84528;84529 102251;102252;102253 102252 3 RYEMLQDNVEGYRR Oxidation (M) 1843.8635 0.86352988 641 P12270 TPR Nucleoprotein TPR yes yes 0 0 1 2 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 32.782 32.826 4 1.4169E-06 7777 20211116_3433_TMUAki_TMT10x_P_F5 115.12 96.658 810800 1440000 8933 1590800 2018300 1682500 1124000 1055900 1078800 823120 1255200 755000 1344200 92459 1613600 1913300 1694300 1185500 1098200 1105700 813500 1205400 4 4 4 4 4 4 4 4 4 4 4 634080 1142700 5194.5 1291100 1838200 1550200 957060 898970 936180 663950 1025800 590430 1066800 74275 1310600 1740700 1548700 1016200 939850 956490 658130 986740 2 2 2 2 2 2 2 2 2 2 2 176720 297290 3738.5 299660 180130 132280 166990 156940 142620 159180 229430 164570 277420 18183 303030 172610 145640 169310 158380 149230 155370 218630 2 2 2 2 2 2 2 2 2 2 2 160410000 151280000 9129100 16613 641 15253 84530;84531;84532 102254;102255;102256;102257 102255 678 4 RYEMLQDNVEGYRR Unmodified 1827.8686 0.86861526 641 P12270 TPR Nucleoprotein TPR yes yes 0 0 0 2 By MS/MS By MS/MS 5 0 2 1 1 35.652 35.72 4 5.2237E-10 7768 20211116_3444_TMUAki_TMT10x_S_F5 139.6 117.73 1035100 1636200 8489.9 1719300 1663400 1477700 1096100 1003500 878720 891420 1227600 963790 1527100 100920 1744500 1581100 1509700 1134700 1040900 915840 875230 1173400 2 2 1 2 2 2 2 2 2 2 2 791160 1271400 8489.9 1246700 1454600 1314800 916660 746420 645360 655690 936170 736720 1186200 82798 1274600 1381800 1322500 949540 784880 678740 644110 894090 1 1 1 1 1 1 1 1 1 1 1 243900 364830 0 472630 208770 162890 179430 257070 233360 235740 291410 227080 340830 18125 469920 199340 187160 185210 255980 237100 231110 279310 1 1 0 1 1 1 1 1 1 1 1 94176000 64209000 29967000 16614 641 15253 84533;84534 102258;102259 102259 2 RYESHPVCADLQAK Unmodified 1672.7991 0.79913871 3003 Q9NX63 CHCHD3 MICOS complex subunit MIC19 yes yes 0 0 0 1 By MS/MS 5 0 1 1 32.191 32.131 4 2.3852E-06 7559 20211116_3433_TMUAki_TMT10x_P_F5 108.71 93.511 622550 966130 6019.4 1104000 1475400 1078900 667570 516880 547000 540440 738880 579700 902010 69168 1116200 1394700 1088000 715660 554590 568560 526850 706830 1 1 1 1 1 1 1 1 1 1 1 622550 966130 6019.4 1104000 1475400 1078900 667570 516880 547000 540440 738880 579700 902010 69168 1116200 1394700 1088000 715660 554590 568560 526850 706830 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 97017000 97017000 0 16615 3003 15254 84535 102260 102260 1 RYETLVGTIGKK Unmodified 1363.7823 0.78234966 2582 Q99547 MPHOSPH6 M-phase phosphoprotein 6 yes yes 0 0 0 2 By MS/MS By MS/MS 3 0 2 1 1 43.648 43.504 4 0.0021792 14558 20211116_3441_TMUAki_TMT10x_S_F3 76.358 64.4 902780 1475100 4480.8 1529900 1691000 1631300 1064800 1631400 1583700 1331000 1442400 840580 1376600 86461 1558400 1605700 1655600 1128800 1649700 1583400 1312300 1395800 2 2 1 2 2 2 2 2 2 2 2 436350 621360 4480.8 631060 1147900 1092800 543550 683550 696460 568850 618300 406320 579830 50319 650000 1085800 1075600 587680 712200 699060 560290 598880 1 1 1 1 1 1 1 1 1 1 1 466430 853750 0 898810 543060 538530 521220 947890 887250 762170 824120 434260 796810 36142 908360 519930 580040 541160 937530 884370 752020 796950 1 1 0 1 1 1 1 1 1 1 1 63340000 33877000 29463000 16616 2582 15255 84536;84537 102261;102262 102262 2 RYFGGTEDR Unmodified 1099.5047 0.50467125 1859 Q16658 FSCN1 Fascin yes yes 0 0 0 1 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 29.109 29.009 3 0.00038898 5953 20211116_3431_TMUAki_TMT10x_P_F4 114.89 90.559 419380 724400 11724 592660 598230 733460 538500 527750 453970 803180 576350 390570 675450 48201 616020 572820 733890 546730 555200 469880 773080 552190 2 2 2 2 2 2 2 2 2 2 2 266080 441160 5901.5 341140 420460 541180 319790 309620 275630 473120 355710 247790 411270 29722 358080 400980 533770 328270 331390 285180 455340 340660 1 1 1 1 1 1 1 1 1 1 1 153300 283240 5822.9 251510 177780 192280 218720 218120 178340 330060 220630 142780 264170 18479 257940 171840 200120 218460 223820 184700 317740 211530 1 1 1 1 1 1 1 1 1 1 1 26967000 17194000 9772900 16617 1859 15256 84538;84539;84540 102263;102264 102263 2 RYGDFFIR Unmodified 1072.5454 0.54541385 3224 Q9Y262;Q9Y262-2 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 0 0 0 1 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 46.174 46.147 3 0.00057734 14069 20211116_3429_TMUAki_TMT10x_P_F2 146.69 89.883 958110 1643700 52781 1810900 1816000 1828300 1147400 1561100 1543400 1224000 1537800 892490 1534400 140640 1835800 1727600 1855400 1211100 1590600 1552600 1209300 1483700 2 2 2 2 2 2 2 2 2 2 2 484980 873820 31474 937950 1208600 1442900 738010 832150 820990 643070 766060 451800 815600 79676 959880 1149000 1425000 775770 871240 829640 635850 740690 1 1 1 1 1 1 1 1 1 1 1 473130 769890 21307 872900 607340 385400 409390 728940 722410 580950 771770 440690 718780 60963 875940 578660 430410 435300 719370 722980 573480 742970 1 1 1 1 1 1 1 1 1 1 1 178020000 94949000 83072000 16618 3224 15257 84541;84542;84543 102265;102266;102267 102266 3 RYIGIVK Unmodified 847.52797 0.52797287 1181 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 2.75 0.829 2 1 1 2 2 37.64 37.549 3 0.00095394 10607 20211116_3429_TMUAki_TMT10x_P_F2 134.66 74.305 8392700 13207000 96664 13474000 11363000 12355000 9712800 8197600 8512100 8389200 9582600 7815100 12324000 827500 13710000 10859000 12562000 9901200 8550300 8750200 8185400 9210900 4 4 4 4 4 4 4 4 4 4 4 5160600 8136500 61320 8165600 9081600 9577700 6251600 5131900 5496200 5358000 5989800 4805500 7592400 539910 8349300 8640400 9570100 6465800 5448900 5642000 5223600 5762900 2 2 2 2 2 2 2 2 2 2 2 3232100 5070000 35344 5308300 2281100 2777200 3461200 3065700 3015900 3031200 3592800 3009700 4731800 287580 5360600 2219000 2991800 3435400 3101400 3108200 2961800 3448000 2 2 2 2 2 2 2 2 2 2 2 611390000 321780000 289610000 16619 1181 15258 84544;84545;84546;84547 102268;102269;102270;102271 102268 4 RYILPDEPAIIVHPNWAAK Unmodified 2202.195 0.19495842 2152 Q8IX12;Q8IX12-2 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 0 0 0 1 By MS/MS 1 0 1 1 62.352 62.352 4 1.8356E-12 19082 20211116_3428_TMUAki_TMT10x_P_F1 131.82 115.7 3135300 4727100 8627.1 4636300 3548700 5969000 4362800 2867100 2615300 2931400 3576700 2919400 4410500 273770 4756100 3423600 5928900 4328700 3073500 2771200 2860300 3420600 1 1 1 1 1 1 1 1 1 1 1 3135300 4727100 8627.1 4636300 3548700 5969000 4362800 2867100 2615300 2931400 3576700 2919400 4410500 273770 4756100 3423600 5928900 4328700 3073500 2771200 2860300 3420600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 468660000 468660000 0 16620 2152 15259 84548 102272 102272 1 RYLDQFVPEK Unmodified 1293.6717 0.67173657 2120 Q86W56;Q86W56-3;Q86W56-2;Q86W56-5;Q86W56-4 PARG Poly(ADP-ribose) glycohydrolase yes no 0 0 0 1 By MS/MS 7 0 1 1 52.201 52.893 3 0.059125 16469 20211116_3435_TMUAki_TMT10x_P_F7 47.894 24.289 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16621 2120 15260 84549 102273 102273 1 RYNCEYSGPPKPLPK Unmodified 1804.893 0.89303909 163 O15118 NPC1 Niemann-Pick C1 protein yes yes 0 0 0 2 By MS/MS By matching 1.33 0.471 2 1 2 1 37.684 37.575 4 0.0017657 10560 20211116_3429_TMUAki_TMT10x_P_F2 68.413 41.384 728880 1156700 6990.4 1414500 2327900 1843000 1139800 1083300 1145600 906400 1187800 678680 1080300 85826 1431200 2202500 1834000 1218400 1134500 1166700 892530 1144500 2 2 1 2 2 2 2 2 2 2 2 728880 1156700 6990.4 1414500 2327900 1843000 1139800 1083300 1145600 906400 1187800 678680 1080300 85826 1431200 2202500 1834000 1218400 1134500 1166700 892530 1144500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 106370000 96367000 10005000 16622 163 15261 84550;84551;84552 102274;102275 102275 2 RYNIPHGPVVGSTR Unmodified 1551.827 0.82700844 1134 P50402 EMD Emerin yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 32.535 32.301 4 0.00014478 9937 20211116_3441_TMUAki_TMT10x_S_F3 83.869 67.491 1480700 2355300 46252 2428200 2525500 2627900 1898700 1855900 1905600 1697000 2006500 1379000 2198000 180500 2475000 2408700 2647500 1958900 1921200 1941900 1664000 1932400 4 4 4 4 4 4 4 4 4 4 4 929020 1510500 33013 1532600 1913100 2098900 1259600 1096200 1184000 1048200 1218400 865250 1409500 121570 1570400 1820000 2080800 1309500 1163700 1209000 1025700 1174300 2 2 2 2 2 2 2 2 2 2 2 551660 844850 13239 895660 612390 528970 639110 759690 721580 648800 788050 513750 788530 58925 904650 588670 566680 649430 757430 732830 638220 758150 2 2 2 2 2 2 2 2 2 2 2 127650000 94462000 33187000 16623 1134 15262 84553;84554 102276;102277;102278;102279 102279 4 RYNVLGAETVLNQMR Oxidation (M) 1778.9098 0.90975179 1874 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 1 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 46.689 46.641 3 8.0185E-10 14719 20211116_3439_TMUAki_TMT10x_S_F1 130.95 111.71 5517000 9529000 137330 10464000 9398000 10366000 6524400 8606000 9095600 7280700 8126200 5137700 8895000 614360 10607000 8945700 10526000 6847800 8799100 9106300 7165300 7869100 6 6 5 6 6 6 6 6 6 6 6 3127500 5228200 95010 5909700 7079400 8327000 4592500 4913800 5315900 4068400 4747600 2912500 4881000 377810 6016800 6729600 8257200 4810800 5143000 5356200 4008300 4597500 3 3 2 3 3 3 3 3 3 3 3 2389500 4300800 42319 4554300 2318600 2038700 1931900 3692200 3779700 3212300 3378600 2225100 4014100 236550 4590600 2216100 2269200 2037000 3656100 3750100 3157000 3271600 3 3 3 3 3 3 3 3 3 3 3 1135900000 784450000 351480000 16624 1874 15263 84555;84556;84557;84558 102280;102281;102282;102283;102284;102285 102283 2493 6 RYPGFMR Oxidation (M) 941.45416 0.454156 2715 Q9BXP5;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3 SRRT Serrate RNA effector molecule homolog yes no 0 0 1 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 29.671 29.617 3 0.045 7402 20211116_3429_TMUAki_TMT10x_P_F2 50.039 39.166 625870 1101400 11328 919420 1124300 1351500 905300 938590 906560 920000 966380 582830 1027100 69427 957280 1073200 1340900 929780 974570 924340 899290 930380 3 3 3 3 3 3 3 3 3 3 3 456960 771230 7760.5 678300 829100 1047800 650240 590430 615170 620060 656190 425530 719290 50330 704060 790950 1034400 667830 624280 628820 604360 631730 2 2 2 2 2 2 2 2 2 2 2 168910 330200 3567.1 241120 295230 303710 255060 348150 291390 299940 310190 157300 307780 19097 253210 282280 306530 261940 350290 295510 294930 298650 1 1 1 1 1 1 1 1 1 1 1 29247000 25497000 3749100 16625 2715 15264 84559;84560;84561 102286;102287 102287 2918 2 RYQEALHLGSQLLR Unmodified 1682.9216 0.92163711 73 O00231;O00231-2 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 0 0 0 1 By MS/MS By MS/MS 2.57 0.495 3 4 3 4 49.34 49.139 3;4 2.3709E-24 16805 20211116_3441_TMUAki_TMT10x_S_F3 197.19 170.48 2984300 4606800 15812 5420000 4466400 5212600 3542100 3883400 3789900 3725600 3968000 2778800 4301700 282340 5468800 4260300 5293200 3648900 4010800 3851100 3645100 3822300 4 4 3 4 4 4 4 4 4 4 4 1854900 2819600 3862 3355500 3267900 4110000 2564800 2466200 2472400 2368300 2428600 1727200 2633000 177180 3396600 3116000 4103500 2635500 2587500 2517800 2317000 2344100 2 2 2 2 2 2 2 2 2 2 2 1129400 1787300 11950 2064500 1198500 1102600 977370 1417200 1317500 1357300 1539400 1051600 1668800 105160 2072200 1144300 1189700 1013500 1423200 1333300 1328100 1478100 2 2 1 2 2 2 2 2 2 2 2 1300900000 700260000 600630000 16626 73 15265 84562;84563;84564;84565;84566;84567;84568 102288;102289;102290;102291;102292 102292 5 RYSSEVATESPLDFTK Unmodified 1828.8843 0.88430813 2293 Q8WTT2 NOC3L Nucleolar complex protein 3 homolog yes yes 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 52.103 52.235 3 1.9567E-05 14733 20211116_3445_TMUAki_TMT10x_S_F6 95.767 77.628 4245700 8036800 55253 9035800 3815100 3528300 3379000 4977300 5775600 5122500 5807900 3953200 7502900 351880 9065100 3647500 3966700 3524400 4991800 5771900 4996900 5601700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4245700 8036800 55253 9035800 3815100 3528300 3379000 4977300 5775600 5122500 5807900 3953200 7502900 351880 9065100 3647500 3966700 3524400 4991800 5771900 4996900 5601700 2 2 1 2 2 2 2 2 2 2 2 100900000 0 100900000 16627 2293 15266 84569;84570 102293;102294;102295 102295 3 RYTCGEAPDYDRSQWLDVK Unmodified 2358.0699 0.069893839 752 P21266 GSTM3 Glutathione S-transferase Mu 3 yes yes 0 0 0 2 By MS/MS 6 0 1 1 47.944 48.105 4 2.4732E-06 13031 20211116_3445_TMUAki_TMT10x_S_F6 97.57 65.478 1857100 3240400 38820 3925400 1997500 1500100 1234200 2820800 2676100 2438500 2903000 1729500 3026200 192110 3919900 1898500 1707500 1336400 2789900 2667400 2397300 2793400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1857100 3240400 38820 3925400 1997500 1500100 1234200 2820800 2676100 2438500 2903000 1729500 3026200 192110 3919900 1898500 1707500 1336400 2789900 2667400 2397300 2793400 1 1 1 1 1 1 1 1 1 1 1 101980000 0 101980000 16628 752 15267 84571 102296 102296 1 RYVLEEAEQLEPR Unmodified 1630.8315 0.83148469 2218 Q8NAV1 PRPF38A Pre-mRNA-splicing factor 38A yes yes 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 52.668 52.451 3 1.5321E-06 15330 20211116_3440_TMUAki_TMT10x_S_F2 116.71 102.28 11722000 18449000 120270 20062000 14542000 16608000 12801000 13673000 12745000 11974000 15922000 10914000 17221000 1046400 20301000 13902000 17066000 13074000 13999000 13081000 11764000 15261000 4 4 2 4 4 4 4 4 4 4 4 5627200 9118000 93944 10052000 9016800 11941000 7669700 6892400 6863700 5789700 8364300 5240100 8511500 583970 10217000 8616500 11935000 7825200 7229500 7071200 5700000 8022300 2 2 1 2 2 2 2 2 2 2 2 6094500 9330600 26324 10010000 5525200 4666300 5131400 6780200 5881700 6184100 7557300 5674300 8709000 462450 10084000 5285600 5130800 5248800 6769100 6010300 6064300 7238400 2 2 1 2 2 2 2 2 2 2 2 1003100000 715050000 288070000 16629 2218 15268 84572;84573;84574 102297;102298;102299;102300;102301 102301 5 RYYGGAEVVDEIELLCQR Unmodified 2169.0525 0.052452861 915 P34897;P34897-3;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 3.25 0.829 1 1 2 2 2 70.191 70.018 3 1.9707E-30 23746 20211116_3429_TMUAki_TMT10x_P_F2 164.93 140.64 10121000 15938000 97096 14448000 11235000 13713000 11287000 10338000 9147600 10554000 11689000 9424000 14866000 919800 14833000 10778000 13939000 11380000 10687000 9489900 10298000 11197000 4 4 2 4 4 4 4 4 4 4 4 3763700 5619000 43258 5103600 3666100 6693900 4402700 3759700 2775100 3768700 4176600 3504700 5241200 350990 5266700 3536400 6655200 4377000 3971000 2944100 3680300 3985700 1 1 1 1 1 1 1 1 1 1 1 6357100 10319000 53837 9344200 7568600 7018700 6884200 6578000 6372500 6784900 7511900 5919300 9625000 568810 9566700 7241600 7283800 7002900 6716500 6545800 6618000 7211200 3 3 1 3 3 3 3 3 3 3 3 1675000000 624050000 1051000000 16630 915 15269 84575;84576;84577;84578 102302;102303;102304;102305;102306 102302 5 SAAASNLSGLSLQEAQQILNVSK Unmodified 2328.2285 0.22850297 1266 Q9Y3D7;P57737-3 PAM16 Mitochondrial import inner membrane translocase subunit TIM16 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 78.339 78.317 3 6.5505E-46 27530 20211116_3439_TMUAki_TMT10x_S_F1 204.17 167.08 9938200 17070000 327800 15674000 11515000 14818000 12724000 8685100 8578100 9560400 12543000 9255900 15923000 1151500 16076000 11091000 15010000 12715000 9166100 9048900 9301200 11977000 3 3 3 3 3 3 3 3 3 3 3 3042400 4923100 34005 4976700 2709400 6128100 3429600 2777100 2533800 3328500 3679100 2833000 4594000 279260 5090500 2618100 6096500 3413400 3009200 2657500 3228100 3513600 1 1 1 1 1 1 1 1 1 1 1 6895900 12147000 293790 10697000 8805500 8689500 9294200 5908000 6044300 6231900 8864400 6422900 11329000 872260 10985000 8473200 8913600 9301400 6156900 6391300 6073100 8463800 2 2 2 2 2 2 2 2 2 2 2 2446000000 1498700000 947250000 16631 1266 15270 84579;84580 102307;102308;102309 102308 3 SAADEVDGLGVARPHYGSVLDNER Acetyl (Protein N-term) 2568.2205 0.22045748 1059 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 1 0 0 1 By MS/MS 2 0 1 1 52.902 52.648 3 2.0744E-07 16678 20211116_3429_TMUAki_TMT10x_P_F2 70.533 60.476 1336200 2259700 80149 1954300 1800600 2787900 1829900 2147800 1736100 1967900 2142700 1244700 2107400 191980 2027700 1732100 2774300 1851700 2210700 1784700 1929400 2054400 1 1 1 1 1 1 1 1 1 1 1 1336200 2259700 80149 1954300 1800600 2787900 1829900 2147800 1736100 1967900 2142700 1244700 2107400 191980 2027700 1732100 2774300 1851700 2210700 1784700 1929400 2054400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 492140000 492140000 0 16632 1059 15271 84581 102310 102310 1 SAADIIALAR Unmodified 999.57129 0.57129425 1691 Q14194-2;Q14194 CRMP1 Dihydropyrimidinase-related protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 58.786 59.06 2 0.00060566 17496 20211116_3445_TMUAki_TMT10x_S_F6 102.62 49.985 108890000 180620000 0 164050000 131000000 158850000 117280000 116450000 90796000 110400000 123370000 101370000 168480000 7777600 168450000 125170000 161200000 118860000 120350000 94685000 108070000 118010000 6 6 0 6 6 6 6 6 6 6 6 59386000 94410000 0 84461000 70038000 117950000 67117000 60632000 46599000 58608000 63561000 55287000 88057000 4211400 87368000 67026000 116800000 67598000 64479000 48906000 57323000 60790000 3 3 0 3 3 3 3 3 3 3 3 49503000 86210000 0 79592000 60965000 40907000 50165000 55813000 44198000 51793000 59813000 46087000 80419000 3566200 81086000 58140000 44394000 51265000 55874000 45779000 50750000 57216000 3 3 0 3 3 3 3 3 3 3 3 6622600000 3125100000 3497500000 16633 1691 15272 84582;84583;84584;84585;84586;84587 102311;102312;102313;102314;102315;102316 102315 6 SAADLISQAR Unmodified 1030.5407 0.5407224 1692 Q14195-2;Q14195 DPYSL3 Dihydropyrimidinase-related protein 3 yes no 0 0 0 0 By MS/MS 5 0 1 1 42.259 42.385 2 0.00093955 10446 20211116_3444_TMUAki_TMT10x_S_F5 97.277 70.821 1436500 2448400 27704 2892400 1458800 1222400 1380200 2285500 2494900 1848000 2265400 1337700 2286300 145230 2894400 1398500 1372200 1438700 2256900 2481200 1822900 2192500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1436500 2448400 27704 2892400 1458800 1222400 1380200 2285500 2494900 1848000 2265400 1337700 2286300 145230 2894400 1398500 1372200 1438700 2256900 2481200 1822900 2192500 1 1 1 1 1 1 1 1 1 1 1 67725000 0 67725000 16634 1692 15273 84588 102317 102317 1 SAADSISESVPVGPK Unmodified 1442.7253 0.72528829 1036 P45974;P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 49.179 49.299 3 8.5858E-10 14083 20211116_3431_TMUAki_TMT10x_P_F4 130.1 105.82 9619300 15486000 64807 19880000 18277000 17722000 11264000 13732000 15534000 11356000 15126000 8956900 14467000 964840 19939000 17351000 18097000 11924000 14092000 15602000 11189000 14605000 4 4 3 4 4 4 4 4 4 4 4 5201800 8369700 23508 9983500 14388000 14007000 7745300 7095300 8112800 5703300 7721000 4843500 7815800 567520 10131000 13629000 13866000 8215100 7521100 8223400 5627500 7460300 2 2 1 2 2 2 2 2 2 2 2 4417500 7116500 41299 9896800 3888800 3714300 3518700 6636900 7421700 5653200 7405400 4113400 6650800 397320 9807500 3721900 4230900 3709400 6571000 7378900 5561700 7144300 2 2 2 2 2 2 2 2 2 2 2 1224500000 810300000 414220000 16635 1036 15274 84589;84590;84591;84592;84593 102318;102319;102320;102321 102318 4 SAAEMYGSSFDLDYDFQR Oxidation (M) 2116.8684 0.86840006 545 P07910-2;P07910-4 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 0 0 1 0 By MS/MS By MS/MS 3.25 1.23 1 3 2 4 2 5 7 66.936 66.769 2;3 2.1039E-57 22379 20211116_3429_TMUAki_TMT10x_P_F2 244.73 214.33 59128000 105310000 413180 87164000 74566000 90738000 83097000 77100000 77144000 79092000 85559000 55055000 98198000 5021600 90257000 71727000 91911000 83659000 79138000 79040000 77163000 82275000 16 16 6 16 16 16 16 16 16 16 16 25036000 42669000 148950 36323000 28433000 49069000 34241000 30188000 31468000 33067000 34984000 23312000 39791000 2169900 37695000 27412000 48778000 34343000 31732000 32259000 32176000 33639000 6 6 2 6 6 6 6 6 6 6 6 34091000 62642000 264240 50840000 46132000 41669000 48856000 46912000 45677000 46025000 50575000 31744000 58407000 2851700 52562000 44315000 43133000 49316000 47405000 46781000 44987000 48636000 10 10 4 10 10 10 10 10 10 10 10 9856100000 3826600000 6029400000 16636 545 15275 84594;84595;84596;84597;84598;84599;84600;84601;84602;84603;84604;84605 102322;102323;102324;102325;102326;102327;102328;102329;102330;102331;102332;102333;102334;102335;102336;102337 102323 493 16 SAAEMYGSSFDLDYDFQR Unmodified 2100.8735 0.87348544 545 P07910-2;P07910-4 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 0 0 0 0 By MS/MS By MS/MS 3.4 1.02 1 2 1 1 2 3 73.312 73.088 3 0.009811 24311 20211116_3442_TMUAki_TMT10x_S_F4 47.726 40.474 24475000 41695000 239530 32055000 32909000 28980000 29129000 26763000 22760000 28814000 32595000 22786000 38870000 1849100 33337000 31440000 29663000 29547000 27384000 23782000 28056000 31139000 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24475000 41695000 239530 32055000 32909000 28980000 29129000 26763000 22760000 28814000 32595000 22786000 38870000 1849100 33337000 31440000 29663000 29547000 27384000 23782000 28056000 31139000 4 4 2 4 4 4 4 4 4 4 4 1338800000 0 1338800000 16637 545 15275 84606;84607;84608;84609;84610 102338;102339;102340;102341;102342;102343;102344 102342 7 SAAEMYGSSFDLDYDFQRDYYDR Oxidation (M) 2829.1501 0.15005423 545 P07910-2;P07910-4 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 0 0 1 1 By MS/MS By MS/MS 3.25 0.829 1 1 2 2 2 67.404 67.188 3 1.6444E-20 22610 20211116_3429_TMUAki_TMT10x_P_F2 142.93 134.94 6678700 12183000 45070 8188400 8316000 18639000 9724600 20004000 21212000 17782000 12800000 6218500 11353000 568930 8792000 8008700 18374000 10146000 20204000 20778000 17458000 12608000 6 6 3 6 6 6 6 6 6 6 6 4690100 8258100 18123 5636100 4909100 14415000 6494900 13362000 14409000 12027000 8396100 4366700 7695900 359080 6066300 4744800 14120000 6750100 13599000 14099000 11801000 8285600 4 4 1 4 4 4 4 4 4 4 4 1988600 3925000 26947 2552300 3406900 4224200 3229700 6641800 6802600 5754700 4404200 1851800 3657400 209850 2725700 3263900 4254600 3395900 6604400 6679000 5656900 4322800 2 2 2 2 2 2 2 2 2 2 2 2231500000 1327200000 904220000 16638 545 15276 84611;84612;84613;84614 102345;102346;102347;102348;102349;102350 102346 493 6 SAAETVTK Unmodified 805.41815 0.41814765 1316 P61604 HSPE1 10 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 30.919 30.77 2 0.00043647 9340 20211116_3441_TMUAki_TMT10x_S_F3 140.5 55.437 2508500 4061700 21740 3223000 2722300 3288700 2724000 1492000 1634300 1620300 2684500 2335800 3786900 228110 3348300 2611400 3305900 2729200 1611500 1747600 1577200 2557200 3 3 2 3 3 3 3 3 3 3 3 1623800 2547300 1317.5 2081600 1687700 2316300 1485900 994560 1086100 1016200 1687000 1511900 2375200 133630 2160000 1613000 2315500 1505400 1078500 1143700 991580 1608800 2 2 1 2 2 2 2 2 2 2 2 884630 1514400 20422 1141500 1034600 972380 1238100 497450 548230 604120 997530 823830 1411700 94476 1188300 998410 990350 1223800 532940 603860 585620 948380 1 1 1 1 1 1 1 1 1 1 1 122700000 64946000 57756000 16639 1316 15277 84615;84616;84617 102351;102352;102353 102353 3 SAALPIFSSFVSNWDEATK Unmodified 2069.0106 0.010571271 377 O76021;O76021-2 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 0 0 0 0 By MS/MS 8 0 1 1 81.062 81.059 3 2.0247E-08 26229 20211116_3447_TMUAki_TMT10x_S_F8 106.16 90.564 2547600 4023500 39853 4586900 2290500 1896100 3088400 1351200 1254500 1577200 2819900 2372300 3756500 242140 4599400 2218600 2085300 3034200 1408100 1412000 1531100 2671800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2547600 4023500 39853 4586900 2290500 1896100 3088400 1351200 1254500 1577200 2819900 2372300 3756500 242140 4599400 2218600 2085300 3034200 1408100 1412000 1531100 2671800 2 2 1 2 2 2 2 2 2 2 2 336010000 0 336010000 16640 377 15278 84618 102354;102355 102354 2 SAALPIFSSFVSNWDEATKR Unmodified 2225.1117 0.1116823 377 O76021;O76021-2 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 2.83 0.687 2 3 1 3 3 79.171 79.124 3 2.8114E-80 27875 20211116_3430_TMUAki_TMT10x_P_F3 299.23 282.48 35246000 55712000 221890 53260000 43601000 41807000 47363000 19127000 14728000 23946000 38417000 32817000 51976000 2971600 54336000 41897000 42787000 46835000 20736000 17252000 23189000 36326000 7 7 3 7 7 7 7 7 7 7 7 16440000 25007000 90942 24282000 18201000 25738000 22088000 8819100 6666600 10457000 17790000 15308000 23331000 1466200 24845000 17555000 25750000 21725000 9869500 7851700 10146000 16817000 3 3 2 3 3 3 3 3 3 3 3 18805000 30705000 130950 28977000 25400000 16069000 25274000 10308000 8061300 13489000 20627000 17508000 28644000 1505300 29491000 24342000 17037000 25110000 10867000 9400100 13043000 19509000 4 4 1 4 4 4 4 4 4 4 4 9057100000 4078800000 4978300000 16641 377 15279 84619;84620;84621;84622;84623;84624 102356;102357;102358;102359;102360;102361;102362;102363 102358 8 SAAMTLNER Unmodified 991.47568 0.4756793 3018 Q9NYF8;Q9NYF8-2;Q9NYF8-4;Q9NYF8-3 BCLAF1 Bcl-2-associated transcription factor 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 32.963 32.724 2 0.091178 10079 20211116_3441_TMUAki_TMT10x_S_F3 47.187 28.404 284860 434300 1487.1 468010 293420 228930 302940 255500 257270 224250 399590 265240 405370 25123 471490 281680 248560 305380 257500 268770 220300 381070 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 284860 434300 1487.1 468010 293420 228930 302940 255500 257270 224250 399590 265240 405370 25123 471490 281680 248560 305380 257500 268770 220300 381070 1 1 1 1 1 1 1 1 1 1 1 6562300 0 6562300 16642 3018 15280 84625 102364 102364 1 SAAQAAAQTNSNAAGK Unmodified 1459.7015 0.70153315 2232 Q8NC51;Q8NC51-3;Q8NC51-2;Q8NC51-4 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 0 0 0 0 By MS/MS 5 0 1 1 30.301 30.234 3 1.5925E-35 6788 20211116_3433_TMUAki_TMT10x_P_F5 201.3 160.25 557850 1025000 13445 815460 730080 968250 664070 350440 410140 383920 657360 519510 955620 61192 848990 699190 963080 669180 388480 437130 373580 626480 1 1 1 1 1 1 1 1 1 1 1 557850 1025000 13445 815460 730080 968250 664070 350440 410140 383920 657360 519510 955620 61192 848990 699190 963080 669180 388480 437130 373580 626480 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 128790000 128790000 0 16643 2232 15281 84626 102365 102365 1 SAATLITHPFHVITLR Unmodified 1776.0046 0.004638453 3346 Q9Y6C9 MTCH2 Mitochondrial carrier homolog 2 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 55.597 55.777 4 1.924E-21 17076 20211116_3433_TMUAki_TMT10x_P_F5 171.91 150.68 3969500 6040600 45403 6705500 4585200 5948500 3993500 4475800 3932900 3993900 4620000 3696000 5639000 328540 6782400 4381100 6073500 4079900 4610500 4028100 3920500 4435500 5 5 3 5 5 5 5 5 5 5 5 1921500 3076000 29589 3346200 2773000 4162400 2260400 2166500 1966800 2006700 2338600 1789200 2871300 181130 3406800 2646600 4145200 2310600 2298700 2026900 1966400 2244400 3 3 2 3 3 3 3 3 3 3 3 2048000 2964600 15814 3359300 1812300 1786100 1733100 2309300 1966100 1987200 2281500 1906800 2767700 147410 3375700 1734400 1928400 1769300 2311900 2001200 1954000 2191100 2 2 1 2 2 2 2 2 2 2 2 1553800000 1016700000 537050000 16644 3346 15282 84627;84628 102366;102367;102368;102369;102370 102368 5 SAATSGAGSTTSGVVSGSLGSR Unmodified 1895.9185 0.9184618 2092 Q7Z6Z7;Q7Z6Z7-2;Q7Z6Z7-3 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 0 0 0 0 By MS/MS 6 0 1 1 36.103 36.268 3 5.7911E-06 8361 20211116_3445_TMUAki_TMT10x_S_F6 83.871 70.444 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16645 2092 15283 84629 102371 102371 1 SACGNCYLGDAFR Unmodified 1489.6078 0.60783246 1972 Q6FI81;Q6FI81-3;Q6FI81-2 CIAPIN1 Anamorsin yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 47.954 48.122 2 6.3136E-19 13034 20211116_3445_TMUAki_TMT10x_S_F6 187.51 133.76 21047000 32116000 1387900 45542000 27767000 32732000 20155000 30151000 31783000 29342000 32560000 19607000 30018000 3122400 45320000 26517000 34077000 21202000 30762000 31853000 28690000 31385000 3 3 2 3 3 3 3 3 3 3 3 7213300 10767000 419150 15872000 18389000 20624000 12248000 12280000 12802000 10301000 12485000 6719400 10066000 1145200 15902000 17503000 20530000 12762000 12848000 12988000 10142000 12053000 1 1 1 1 1 1 1 1 1 1 1 13834000 21349000 968750 29670000 9378700 12107000 7907700 17871000 18981000 19041000 20075000 12888000 19952000 1977200 29418000 9013800 13547000 8440800 17914000 18864000 18548000 19332000 2 2 1 2 2 2 2 2 2 2 2 1052700000 394950000 657760000 16646 1972 15284 84630;84631;84632;84633 102372;102373;102374 102374 3 SACGVCPGR Unmodified 962.40622 0.40621953 1089 P49207 RPL34 60S ribosomal protein L34 yes yes 0 0 0 0 By MS/MS 5 0 1 1 26.625 26.55 2 0.00073777 5319 20211116_3433_TMUAki_TMT10x_P_F5 113.41 67.46 127720 199070 2022.3 176410 127840 176780 125450 81988 77289 85102 143100 118930 185670 12475 181580 122640 177940 125880 88237 83071 82987 136000 1 1 1 1 1 1 1 1 1 1 1 127720 199070 2022.3 176410 127840 176780 125450 81988 77289 85102 143100 118930 185670 12475 181580 122640 177940 125880 88237 83071 82987 136000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3883600 3883600 0 16647 1089 15285 84634 102375 102375 1 SADEPMTTFVVCNECGNR Oxidation (M) 2101.8503 0.85032393 776 P23193;P23193-2 TCEA1 Transcription elongation factor A protein 1 yes no 0 0 1 0 By MS/MS By MS/MS 2.6 1.02 1 1 2 1 2 3 42.7 42.696 3 2.3576E-31 12752 20211116_3430_TMUAki_TMT10x_P_F3 187 50.746 1360400 2154200 4642.9 2850900 1780100 1707400 1238100 2786700 2646700 2288300 2338000 1266500 2012700 90585 2842000 1692500 1834200 1327800 2763900 2620000 2255400 2264900 6 6 3 6 6 6 6 6 6 6 6 348440 587570 4016.8 768620 841850 972650 471650 866290 782480 726900 564420 324460 548950 39542 774380 798140 975890 507390 881980 774700 715670 551230 2 2 2 2 2 2 2 2 2 2 2 1011900 1566700 626.05 2082200 938280 734790 766470 1920400 1864200 1561400 1773600 942090 1463800 51042 2067700 894380 858310 820430 1882000 1845300 1539700 1713700 4 4 1 4 4 4 4 4 4 4 4 541640000 245940000 295700000 16648 776 15286 84635;84636;84637;84638;84639 102376;102377;102378;102379;102380;102381 102377 905 6 SADEPMTTFVVCNECGNR Unmodified 2085.8554 0.85540931 776 P23193;P23193-2 TCEA1 Transcription elongation factor A protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 53.387 53.129 3 2.7035E-12 18422 20211116_3441_TMUAki_TMT10x_S_F3 132.51 121.85 2860300 4803500 31183 5101800 4369000 5409600 3764800 3970200 4075900 3400900 4121900 2663400 4483300 280240 5188200 4175500 5459600 3860100 4092200 4134600 3345000 3974800 3 3 2 3 3 3 3 3 3 3 3 1905300 2960100 24251 3293500 3232000 4384000 2736200 2505500 2572200 2184700 2658200 1774100 2763400 192060 3352700 3087600 4356700 2796300 2632600 2627000 2146900 2561600 2 2 1 2 2 2 2 2 2 2 2 954990 1843400 6932.5 1808300 1137000 1025600 1028600 1464700 1503800 1216300 1463600 889240 1720000 88185 1835500 1087900 1102900 1063800 1459600 1507600 1198100 1413100 1 1 1 1 1 1 1 1 1 1 1 563110000 389080000 174020000 16649 776 15286 84640;84641;84642 102382;102383;102384 102384 3 SADESGQALLAAGHYASDEVR Unmodified 2145.9927 0.99268938 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.957 1 2 2 1 3 3 51.873 51.701 3 4.616E-28 14985 20211116_3440_TMUAki_TMT10x_S_F2 179.58 165.88 5856800 10022000 114060 10505000 9028200 11799000 7812200 9492600 8860800 8376900 8546600 5454100 9353500 634090 10702000 8632800 11889000 8020300 9734400 8957300 8227300 8254400 7 7 5 7 7 7 7 7 7 7 7 3896300 6464000 42105 6833500 7194400 10037000 6228900 6069300 5571300 5496400 5502800 3628200 6033000 408390 6993100 6876600 9938700 6348400 6354000 5694200 5391700 5310400 4 4 3 4 4 4 4 4 4 4 4 1960500 3558100 71953 3671100 1833700 1761800 1583300 3423300 3289500 2880500 3043900 1825900 3320500 225700 3708600 1756200 1949900 1672000 3380400 3263100 2835600 2943900 3 3 2 3 3 3 3 3 3 3 3 1986100000 1270100000 716010000 16650 1663 15287 84643;84644;84645;84646;84647;84648 102385;102386;102387;102388;102389;102390;102391 102390 7 SADESGQALLAAGHYASDEVREK Unmodified 2403.1302 0.13024549 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 53.141 53.063 4 2.0609E-36 17341 20211116_3430_TMUAki_TMT10x_P_F3 190.19 175.57 12006000 20506000 199240 22566000 16463000 19508000 13001000 14059000 12508000 12405000 15868000 11180000 19142000 1211300 22830000 15708000 19939000 13354000 14520000 12866000 12184000 15204000 6 6 5 6 6 6 6 6 6 6 6 6216100 10781000 127070 12356000 10301000 14275000 8313600 7724700 6938200 6529600 8429300 5788500 10066000 658840 12522000 9832300 14277000 8494100 8148800 7171600 6426400 8085300 3 3 2 3 3 3 3 3 3 3 3 5789900 9725000 72175 10211000 6162200 5232800 4687900 6334200 5570200 5875400 7439000 5391500 9076300 552500 10308000 5875900 5662600 4859600 6370800 5694400 5757100 7118200 3 3 3 3 3 3 3 3 3 3 3 1830900000 1184000000 646910000 16651 1663 15288 84649;84650;84651;84652 102392;102393;102394;102395;102396;102397 102392 6 SADFNPDFVFTEK Unmodified 1515.6882 0.6881745 2476 Q96GQ7 DDX27 Probable ATP-dependent RNA helicase DDX27 yes yes 0 0 0 0 By MS/MS By MS/MS 4.11 0.737 2 4 3 4 5 72.459 72.405 2;3 2.0701E-06 23564 20211116_3431_TMUAki_TMT10x_P_F4 117.86 24.693 55713000 90360000 339300 87032000 68283000 77077000 64804000 54284000 51342000 55875000 68343000 51875000 84303000 4795300 88873000 65386000 78622000 65499000 56390000 53424000 54505000 65401000 11 11 6 11 11 11 11 11 11 11 11 22445000 36168000 168090 34778000 23516000 40795000 26013000 21361000 20614000 22044000 26371000 20897000 33744000 1761300 35667000 22604000 40751000 26088000 22719000 21411000 21501000 25261000 4 4 2 4 4 4 4 4 4 4 4 33269000 54192000 171200 52254000 44767000 36282000 38791000 32924000 30729000 33830000 41972000 30977000 50559000 3034000 53206000 42782000 37871000 39411000 33671000 32013000 33003000 40141000 7 7 4 7 7 7 7 7 7 7 7 4724900000 2173200000 2551700000 16652 2476 15289 84653;84654;84655;84656;84657;84658;84659;84660;84661 102398;102399;102400;102401;102402;102403;102404;102405;102406;102407;102408;102409 102401 12 SADGSAPAGEGEGVTLQR Unmodified 1700.7966 0.79655575 1484 Q01650 SLC7A5 Large neutral amino acids transporter small subunit 1 yes yes 0 0 0 0 By MS/MS 2 0 1 1 34.889 34.667 3 1.0006E-23 9355 20211116_3429_TMUAki_TMT10x_P_F2 168.42 147.75 256890 463800 0 489710 1034600 748260 439280 410300 463430 382200 454060 239170 432870 29172 501620 976910 738730 477450 433380 470070 374430 438300 1 1 0 1 1 1 1 1 1 1 1 256890 463800 0 489710 1034600 748260 439280 410300 463430 382200 454060 239170 432870 29172 501620 976910 738730 477450 433380 470070 374430 438300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 55397000 55397000 0 16653 1484 15290 84662 102410 102410 1 SADGVIVSGVKDVDDFFEHER Unmodified 2320.0972 0.097154447 3192 Q9UNH7;Q9UNH7-2 SNX6 Sorting nexin-6;Sorting nexin-6, N-terminally processed yes no 0 0 0 1 By MS/MS By MS/MS 2.17 1.07 2 2 1 1 2 4 75.249 75.161 4 3.9735E-44 24176 20211116_3428_TMUAki_TMT10x_P_F1 202.62 186.86 33174000 55256000 199030 44916000 38776000 53600000 43010000 38649000 35040000 38954000 42115000 30889000 51521000 2384200 46682000 37296000 53732000 43158000 40060000 36247000 38032000 40408000 8 8 5 8 8 8 8 8 8 8 8 18235000 29656000 41201 23934000 16533000 33936000 22551000 20298000 18076000 20559000 21766000 16979000 27651000 923060 24970000 16005000 33649000 22421000 21334000 18716000 20068000 20883000 4 4 2 4 4 4 4 4 4 4 4 14938000 25600000 157830 20982000 22243000 19663000 20459000 18351000 16964000 18395000 20349000 13910000 23871000 1461100 21712000 21291000 20084000 20738000 18726000 17531000 17964000 19525000 4 4 3 4 4 4 4 4 4 4 4 7206100000 3358600000 3847500000 16654 3192 15291 84663;84664;84665;84666;84667;84668 102411;102412;102413;102414;102415;102416;102417;102418 102411 8 SADTLWDIQK Unmodified 1175.5823 0.58225287 531 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 0 By MS/MS By MS/MS 4.91 0.793 4 4 3 6 5 61.052 61.105 2;3 6.0798E-14 18061 20211116_3444_TMUAki_TMT10x_S_F5 223.84 153.88 67011000 109190000 325330 156020000 133470000 89938000 86251000 44898000 41903000 46416000 91496000 62392000 102060000 6274600 154870000 126780000 94687000 88585000 47968000 46330000 45270000 86728000 15 15 7 15 15 15 15 15 15 15 15 34892000 55024000 161870 77841000 109010000 73318000 66217000 23298000 21245000 24023000 46203000 32487000 51428000 3842700 77732000 103440000 73846000 68012000 26234000 24467000 23432000 43798000 8 8 3 8 8 8 8 8 8 8 8 32119000 54169000 163450 78181000 24461000 16620000 20034000 21600000 20658000 22393000 45293000 29905000 50635000 2431900 77141000 23335000 20840000 20572000 21734000 21863000 21838000 42930000 7 7 4 7 7 7 7 7 7 7 7 6790800000 4421600000 2369200000 16655 531 15292 84669;84670;84671;84672;84673;84674;84675;84676;84677;84678;84679 102419;102420;102421;102422;102423;102424;102425;102426;102427;102428;102429;102430;102431;102432;102433 102429 15 SADTLWGIQK Unmodified 1117.5768 0.57677356 462 P00338;P00338-3;P00338-4 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 0 By MS/MS 6.33 0.471 2 1 3 58.678 58.738 2;3 4.4062E-10 18833 20211116_3435_TMUAki_TMT10x_P_F7 174.41 110.93 2658200 4230300 112330 5376200 7703800 6489300 5039400 2527100 2448200 2461200 3823200 2475900 3951600 395740 5420400 7326600 6453200 5170800 2767400 2652800 2406500 3645500 1 1 1 1 1 1 1 1 1 1 1 2658200 4230300 112330 5376200 7703800 6489300 5039400 2527100 2448200 2461200 3823200 2475900 3951600 395740 5420400 7326600 6453200 5170800 2767400 2652800 2406500 3645500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 225640000 225640000 0 16656 462 15293 84680;84681;84682 102434;102435;102436 102436 3 SAEAFGK Unmodified 708.34425 0.34425443 1615 Q13263;Q13263-2 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 0 By MS/MS By MS/MS 4 0.707 1 2 1 1 3 35.731 35.745 2 0.01854 7749 20211116_3444_TMUAki_TMT10x_S_F5 89.55 39.51 542110 930040 0 900130 626670 481040 559090 546760 584680 530090 772130 504740 867720 43715 914130 599030 517380 571440 552090 600350 518400 739040 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 542110 930040 0 900130 626670 481040 559090 546760 584680 530090 772130 504740 867720 43715 914130 599030 517380 571440 552090 600350 518400 739040 1 1 0 1 1 1 1 1 1 1 1 33505000 0 33505000 16657 1615 15294 84683;84684;84685;84686 102437;102438 102438 2 SAEFLLHMLK Unmodified 1187.6373 0.63726532 721 P18621;P18621-3;P18621-2 RPL17 60S ribosomal protein L17 yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 72.041 71.818 3 6.0707E-08 24853 20211116_3439_TMUAki_TMT10x_S_F1 120.68 59.285 2110500 3209400 70996 4057100 2580200 3044900 2296800 1127000 1018200 1257500 2245600 1965600 2997900 247720 4063900 2471200 3121200 2305000 1246500 1135400 1222700 2128300 1 1 1 1 1 1 1 1 1 1 1 2110500 3209400 70996 4057100 2580200 3044900 2296800 1127000 1018200 1257500 2245600 1965600 2997900 247720 4063900 2471200 3121200 2305000 1246500 1135400 1222700 2128300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 462910000 462910000 0 16658 721 15295 84687;84688 102439;102440 102440 2 SAEFLLHMLK Oxidation (M) 1203.6322 0.63217995 721 P18621;P18621-3;P18621-2 RPL17 60S ribosomal protein L17 yes no 0 0 1 0 By MS/MS 8 0 1 1 58.493 58.485 3 0.021165 17022 20211116_3447_TMUAki_TMT10x_S_F8 60.518 35.727 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16659 721 15295 84689 102441 102441 827 1 SAEHYTETALDEIR Unmodified 1633.7584 0.75837933 2553 Q96SB4;Q96SB4-3;Q96SB4-4 SRPK1 SRSF protein kinase 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 45.511 45.482 3 0.0092545 12456 20211116_3440_TMUAki_TMT10x_S_F2 55.885 41.628 1372300 2476200 41049 2428700 1350100 1208400 1225800 2448700 2473000 1888400 2126900 1278100 2310300 151720 2462800 1293900 1334200 1288500 2410300 2449000 1867400 2062500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1372300 2476200 41049 2428700 1350100 1208400 1225800 2448700 2473000 1888400 2126900 1278100 2310300 151720 2462800 1293900 1334200 1288500 2410300 2449000 1867400 2062500 1 1 1 1 1 1 1 1 1 1 1 53131000 0 53131000 16660 2553 15296 84690;84691 102442;102443 102443 2 SAESPQDAADLFTDLENAFQGK Unmodified 2353.071 0.070999276 2429 Q96CW5;Q96CW5-2 TUBGCP3 Gamma-tubulin complex component 3 yes no 0 0 0 0 By MS/MS By MS/MS 2.8 0.748 2 2 1 2 3 81.844 81.823 3 7.9266E-36 28501 20211116_3429_TMUAki_TMT10x_P_F2 195.46 182.98 8192700 12402000 86255 12270000 7713100 8449500 9591600 5265000 4926900 5622600 8571500 7628300 11572000 684690 12470000 7443700 8771900 9486600 5524500 5345700 5476600 8155700 4 4 2 4 4 4 4 4 4 4 4 2563500 3587700 7245.3 3370900 1989000 3548300 2551100 1784500 1781200 1884900 2953700 2386900 3346900 211240 3456800 1921700 3564200 2534500 1906400 1887400 1836800 2813000 1 1 1 1 1 1 1 1 1 1 1 5629200 8814100 79010 8899500 5724100 4901200 7040500 3480500 3145700 3737700 5617800 5241400 8224900 473450 9013100 5522000 5207700 6952100 3618100 3458300 3639800 5342700 3 3 1 3 3 3 3 3 3 3 3 1474400000 935190000 539210000 16661 2429 15297 84692;84693;84694;84695;84696 102444;102445;102446;102447 102444 4 SAEVPEAASAEEQK Acetyl (Protein N-term) 1486.6787 0.67873203 1256 P56211 ARPP19 cAMP-regulated phosphoprotein 19 yes yes 1 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 43.829 43.73 2 9.9424E-24 13471 20211116_3439_TMUAki_TMT10x_S_F1 106.4 86.613 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16662 1256 15298 84697;84698 102448;102449 102449 2 SAFAPFGK Unmodified 823.42284 0.4228391 1476 Q01085;Q01085-2 TIAL1 Nucleolysin TIAR yes no 0 0 0 0 By MS/MS By MS/MS 2 0 3 2 1 54.434 54.212 2 0.0031016 15992 20211116_3440_TMUAki_TMT10x_S_F2 101.99 48.818 12593000 21584000 108490 21702000 13401000 12029000 11171000 20749000 21033000 17605000 19357000 11726000 20140000 1156400 21987000 12800000 13047000 11753000 20562000 20906000 17323000 18725000 4 4 4 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12593000 21584000 108490 21702000 13401000 12029000 11171000 20749000 21033000 17605000 19357000 11726000 20140000 1156400 21987000 12800000 13047000 11753000 20562000 20906000 17323000 18725000 4 4 4 4 4 4 4 4 4 4 4 796130000 477170000 318960000 16663 1476 15299 84699;84700;84701 102450;102451;102452;102453;102454 102452 5 SAFLLQNLLVGHPEHK Unmodified 1801.9839 0.98390301 3035 Q9NZL4;Q9NZL4-3 HSPBP1 Hsp70-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 63.5 63.322 4 8.678E-16 19742 20211116_3440_TMUAki_TMT10x_S_F2 157.91 137.81 9223100 13549000 54741 14270000 9541100 11689000 9001500 8063400 6719900 8784100 10135000 8587600 12646000 484550 14468000 9135100 11986000 9088200 8402900 7057300 8549300 9671100 4 4 2 4 4 4 4 4 4 4 4 4583100 6126700 49990 6310200 4690100 7233300 4210000 3563600 2894600 4215300 5059900 4267700 5717600 139490 6438200 4488000 7229400 4254700 3828000 3079100 4090000 4814100 2 2 1 2 2 2 2 2 2 2 2 4640000 7422600 4750.9 7959900 4851000 4455600 4791500 4499800 3825300 4568800 5075000 4320000 6928100 345060 8030000 4647100 4756300 4833500 4574900 3978200 4459300 4857000 2 2 1 2 2 2 2 2 2 2 2 2944700000 1693500000 1251200000 16664 3035 15300 84702;84703;84704 102455;102456;102457;102458 102458 4 SAFSNLFGGEPLSYTR Unmodified 1744.842 0.84204938 480 P02786 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes yes 0 0 0 0 By MS/MS By MS/MS 5.4 2.8 4 2 4 5 5 75.225 75.193 2;3 2.1847E-107 23797 20211116_3447_TMUAki_TMT10x_S_F8 356.01 293.19 36006000 62060000 794260 55781000 37310000 62454000 41310000 38700000 36672000 40157000 45586000 33529000 57885000 3534000 57449000 35909000 62679000 41550000 40590000 37827000 39160000 43700000 9 9 4 9 9 9 9 9 9 9 9 26609000 45064000 730220 41081000 24267000 51178000 28488000 29548000 27479000 30223000 33632000 24780000 42035000 2663800 42342000 23406000 51028000 28645000 31154000 28218000 29489000 32253000 6 6 2 6 6 6 6 6 6 6 6 9396500 16996000 64038 14700000 13042000 11276000 12822000 9152500 9193100 9934400 11954000 8749400 15851000 870140 15107000 12503000 11651000 12905000 9436200 9609200 9670200 11446000 3 3 2 3 3 3 3 3 3 3 3 10651000000 6323600000 4327900000 16665 480 15301 84705;84706;84707;84708;84709;84710;84711;84712;84713;84714 102459;102460;102461;102462;102463;102464;102465;102466;102467;102468;102469 102468 11 SAGAMLKPHAPK Oxidation (M) 1222.6492 0.64922699 1953 Q5VYK3 ECM29 Proteasome-associated protein ECM29 homolog yes yes 0 0 1 1 By MS/MS 1 0 1 1 30.714 30.714 4 0.027364 6265 20211116_3428_TMUAki_TMT10x_P_F1 52.555 37.864 186560 301300 4692.3 273920 250830 280130 200740 165780 179440 148260 257040 173750 281040 20741 281470 239530 282430 205580 173800 186240 145520 245560 1 1 1 1 1 1 1 1 1 1 1 186560 301300 4692.3 273920 250830 280130 200740 165780 179440 148260 257040 173750 281040 20741 281470 239530 282430 205580 173800 186240 145520 245560 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7897200 7897200 0 16666 1953 15302 84715 102470 102470 2532 1 SAGGIGVAVSCIR Unmodified 1245.65 0.64995528 791 P23921 RRM1 Ribonucleoside-diphosphate reductase large subunit yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 45.59 45.616 2 1.5287E-34 14288 20211116_3439_TMUAki_TMT10x_S_F1 240.8 189.73 16279000 27555000 97242 30523000 23053000 21034000 15124000 12007000 12987000 11734000 19256000 15156000 25722000 1359900 30787000 21899000 21810000 15690000 12655000 13528000 11471000 18382000 5 5 2 5 5 5 5 5 5 5 5 9129100 15628000 97242 16849000 17649000 16750000 10845000 6956200 7455300 6805900 10867000 8500400 14587000 916690 17101000 16754000 16850000 11251000 7562300 7853800 6653200 10377000 3 3 2 3 3 3 3 3 3 3 3 7149500 11927000 0 13673000 5403900 4284100 4279300 5050600 5531600 4927600 8389500 6655900 11136000 443170 13685000 5145100 4960800 4438300 5092700 5674100 4817600 8004600 2 2 0 2 2 2 2 2 2 2 2 1244100000 690310000 553830000 16667 791 15303 84716;84717;84718;84719;84720;84721 102471;102472;102473;102474;102475;102476;102477;102478 102475 8 SAGGLMFNTGIGQHILK Unmodified 1742.9138 0.91377454 3197 Q9UNQ2 DIMT1 Probable dimethyladenosine transferase yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 62.198 61.763 3 8.5737E-05 21964 20211116_3441_TMUAki_TMT10x_S_F3 79.805 58.712 4842200 8501700 0 8193500 5064900 4028600 4877500 4131500 3240100 3815700 5273200 4507800 7931800 306410 8318200 4845400 4363300 4906600 4186000 3440100 3739600 5024000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4842200 8501700 0 8193500 5064900 4028600 4877500 4131500 3240100 3815700 5273200 4507800 7931800 306410 8318200 4845400 4363300 4906600 4186000 3440100 3739600 5024000 1 1 0 1 1 1 1 1 1 1 1 400230000 0 400230000 16668 3197 15304 84722;84723 102479;102480 102480 2 SAGQGEVLVYVEDPAGHQEEAK Unmodified 2312.0921 0.092069069 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 2.29 1.03 4 4 4 2 7 7 51.839 51.687 3;4 5.6901E-36 14748 20211116_3428_TMUAki_TMT10x_P_F1 196.55 180.61 66233000 107760000 590810 121160000 85488000 103520000 72751000 76929000 71838000 75110000 86420000 61670000 100610000 5813600 122400000 81653000 105950000 74433000 79503000 73640000 73431000 82915000 27 27 15 27 27 27 27 27 27 27 27 34375000 54185000 227590 61376000 54973000 74819000 44837000 39503000 36966000 37478000 43436000 32005000 50588000 2914100 62307000 52441000 74598000 45766000 41885000 38181000 36686000 41701000 14 14 5 14 14 14 14 14 14 14 14 31858000 53579000 363220 59787000 30515000 28702000 27915000 37426000 34872000 37632000 42985000 29665000 50018000 2899500 60089000 29212000 31353000 28666000 37618000 35459000 36745000 41215000 13 13 10 13 13 13 13 13 13 13 13 11145000000 7123000000 4022200000 16669 755 15305 84724;84725;84726;84727;84728;84729;84730;84731;84732;84733;84734;84735;84736;84737 102481;102482;102483;102484;102485;102486;102487;102488;102489;102490;102491;102492;102493;102494;102495;102496;102497;102498;102499;102500;102501;102502;102503;102504;102505;102506;102507 102483 27 SAGQGEVLVYVEDPAGHQEEAKVTANNDK Unmodified 3054.453 0.45303619 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 1 By MS/MS By matching 2.67 0.471 1 2 2 1 51.696 51.445 4 8.7769E-43 16204 20211116_3429_TMUAki_TMT10x_P_F2 193.9 183.29 1416700 2165100 0 1762200 2079700 3514200 1945600 2058200 2172200 1946200 1983000 1318900 2018800 105940 1852400 1989400 3439200 1987500 2162800 2193200 1905400 1918800 1 1 0 1 1 1 1 1 1 1 1 1416700 2165100 0 1762200 2079700 3514200 1945600 2058200 2172200 1946200 1983000 1318900 2018800 105940 1852400 1989400 3439200 1987500 2162800 2193200 1905400 1918800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 869570000 744520000 125060000 16670 755 15306 84738;84739;84740 102508 102508 1 SAGVQCFGPTAEAAQLESSK Unmodified 2036.9473 0.94731909 766 P22102;P22102-2 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 0 0 0 0 By MS/MS 5 0 1 1 57.514 57.648 3 3.6746E-05 16666 20211116_3444_TMUAki_TMT10x_S_F5 76.678 63.845 2434500 4521700 74840 5469300 2235500 2468500 1900000 3508500 3494300 3247400 4033800 2267300 4222800 268800 5467700 2139600 2723200 1994200 3506900 3504300 3182400 3874500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2434500 4521700 74840 5469300 2235500 2468500 1900000 3508500 3494300 3247400 4033800 2267300 4222800 268800 5467700 2139600 2723200 1994200 3506900 3504300 3182400 3874500 1 1 1 1 1 1 1 1 1 1 1 385670000 0 385670000 16671 766 15307 84741 102509 102509 1 SAGVQCFGPTAEAAQLESSKR Unmodified 2193.0484 0.048430116 766 P22102;P22102-2 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 0 0 0 1 By MS/MS By MS/MS 6 0.926 1 4 2 4 3 49.63 49.898 3;4 1.402E-91 13711 20211116_3445_TMUAki_TMT10x_S_F6 305.12 280.53 50462000 93161000 474160 92703000 78407000 105540000 63377000 86133000 80842000 78233000 76733000 46987000 86928000 4272600 94797000 74816000 106290000 65613000 88318000 81333000 76732000 74148000 16 16 9 16 16 16 16 16 16 16 16 27786000 50939000 232960 50349000 56887000 84147000 46882000 47568000 45055000 43430000 41142000 25873000 47529000 2356500 51912000 54304000 82817000 48021000 50086000 45777000 42587000 39809000 9 9 7 9 9 9 9 9 9 9 9 22676000 42223000 241200 42354000 21520000 21397000 16495000 38566000 35787000 34802000 35591000 21114000 39399000 1916100 42885000 20512000 23477000 17591000 38232000 35556000 34145000 34339000 7 7 2 7 7 7 7 7 7 7 7 7486400000 4155600000 3330800000 16672 766 15308 84742;84743;84744;84745;84746;84747;84748 102510;102511;102512;102513;102514;102515;102516;102517;102518;102519;102520;102521;102522;102523;102524;102525;102526 102520 17 SAHLQWMVVR Acetyl (Protein N-term);Oxidation (M) 1283.6445 0.64447597 1053 P46779;P46779-2;P46779-3;P46779-4;P46779-5 RPL28 60S ribosomal protein L28 yes no 1 0 1 0 By MS/MS By MS/MS 2 0 2 1 1 45.56 45.4 2 0.00088245 13742 20211116_3429_TMUAki_TMT10x_P_F2 47.657 39.239 1461300 2384900 15806 2500300 2141800 2195400 1608200 2163500 1867200 1698600 2287300 1360700 2225800 142990 2538000 2041100 2254600 1667200 2187400 1903100 1678100 2193500 2 2 1 2 2 2 2 2 2 2 2 759690 1275900 15806 1205800 1498800 1684200 1045100 1069300 996310 886780 1203200 707460 1190300 88065 1242300 1426600 1672400 1082300 1112800 1023000 873600 1154300 1 1 1 1 1 1 1 1 1 1 1 701560 1109000 0 1294500 643070 511190 563100 1094200 870910 811870 1084100 653200 1035500 54920 1295800 614430 582180 584890 1074600 880100 804540 1039200 1 1 0 1 1 1 1 1 1 1 1 182730000 122090000 60640000 16673 1053 15309 84749;84750 102527;102528 102527 1363 2 SAHLQWMVVR Acetyl (Protein N-term) 1267.6496 0.64956134 1053 P46779;P46779-2;P46779-3;P46779-4;P46779-5 RPL28 60S ribosomal protein L28 yes no 1 0 0 0 By MS/MS 8 0 1 1 54.821 54.753 2 0.0023099 15547 20211116_3447_TMUAki_TMT10x_S_F8 47.657 13.861 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16674 1053 15309 84751 102529 102529 1 SAIDLEEMASGLNK Oxidation (M) 1492.7079 0.70792366 1286 P61011;P61011-2 SRP54 Signal recognition particle 54 kDa protein yes no 0 0 1 0 By MS/MS 4 0 2 2 56.271 56.423 3 0.0002177 17040 20211116_3431_TMUAki_TMT10x_P_F4 76.262 55.599 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16675 1286 15310 84752;84753 102530;102531 102531 1739 2 SAINEVVTR Unmodified 987.53491 0.53490874 1380 P62899;P62899-3;P62899-2 RPL31 60S ribosomal protein L31 yes no 0 0 0 0 By MS/MS By MS/MS 3.83 1.07 1 1 2 2 2 4 31.435 31.447 2 0.0016931 7413 20211116_3444_TMUAki_TMT10x_S_F5 94.804 64.486 14053000 22175000 630.3 25694000 37840000 24890000 16609000 19776000 29697000 15851000 22480000 13084000 20704000 1376400 25951000 35741000 25290000 18363000 20247000 29382000 15643000 21909000 6 6 1 6 6 6 6 6 6 6 6 7271400 11136000 0 13252000 30493000 19944000 9412400 10373000 16714000 8171700 11583000 6769900 10399000 867210 13470000 28704000 19690000 10876000 10964000 16502000 8071600 11333000 2 2 0 2 2 2 2 2 2 2 2 6781500 11038000 630.3 12442000 7347100 4945300 7196700 9402900 12982000 7679500 10896000 6313800 10305000 509150 12482000 7037000 5600500 7486900 9283700 12880000 7571200 10576000 4 4 1 4 4 4 4 4 4 4 4 1635900000 922250000 713680000 16676 1380 15311 84754;84755;84756;84757;84758;84759 102532;102533;102534;102535;102536 102536 5 SAIPAEESDQLLIRPLGAGQEVGR Acetyl (Protein N-term) 2547.3293 0.32927965 3155 Q9UKF6 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 yes yes 1 0 0 1 By MS/MS 1.5 0.5 1 1 2 71.016 70.758 3 7.9532E-13 22513 20211116_3428_TMUAki_TMT10x_P_F1 113.24 101.47 1409200 2631100 5833.4 2210700 1847700 3000500 1815000 2129200 1812600 1805100 2038300 1312100 2453600 128410 2296800 1771200 2988400 1842700 2199100 1852100 1776300 1959300 1 1 1 1 1 1 1 1 1 1 1 1409200 2631100 5833.4 2210700 1847700 3000500 1815000 2129200 1812600 1805100 2038300 1312100 2453600 128410 2296800 1771200 2988400 1842700 2199100 1852100 1776300 1959300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 741390000 741390000 0 16677 3155 15312 84760;84761 102537;102538 102537 2 SAITPGGLR Unmodified 870.49232 0.49231565 915 P34897;P34897-3;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 34.333 34.398 2 0.011139 8546 20211116_3433_TMUAki_TMT10x_P_F5 67.993 45.212 1891200 2923800 15765 3326900 4490100 3245000 2416300 2114500 2542000 1891800 2698500 1760700 2729700 176590 3364300 4252100 3285400 2563300 2200300 2586100 1856800 2598300 2 2 1 2 2 2 2 2 2 2 2 1295800 1909000 0 2241400 3883600 2706900 1858200 1466000 1684200 1238900 1782200 1206300 1782600 112380 2270100 3670800 2701000 1985300 1546300 1724400 1219300 1716200 1 1 0 1 1 1 1 1 1 1 1 595330 1014700 15765 1085500 606540 538020 558170 648570 857880 652980 916290 554430 947110 64207 1094200 581320 584360 577990 653970 861700 637550 882110 1 1 1 1 1 1 1 1 1 1 1 64579000 51289000 13291000 16678 915 15314 84762;84763 102539;102540 102539 2 SAKGEEVDVAR Unmodified 1159.5833 0.5833155 382 O94760 DDAH1 N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 yes yes 0 0 0 1 By matching By MS/MS 2.5 0.5 1 1 1 1 30.035 29.788 3 0.00014835 8994 20211116_3441_TMUAki_TMT10x_S_F3 95.428 47.005 136120 268860 132.33 239680 159370 136730 169200 118180 125620 123860 206380 126750 250760 11735 245040 153070 145230 169770 121260 132570 120730 196590 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 136120 268860 132.33 239680 159370 136730 169200 118180 125620 123860 206380 126750 250760 11735 245040 153070 145230 169770 121260 132570 120730 196590 1 1 1 1 1 1 1 1 1 1 1 12056000 4881600 7174500 16679 382 15315 84764;84765 102541 102541 1 SAKPTKPAASDLPVPAEGVR Unmodified 1990.0847 0.084739267 1521 Q05682;Q05682-3;Q05682-4;Q05682-6;Q05682-2;Q05682-5 CALD1 Caldesmon yes no 0 0 0 2 By MS/MS By MS/MS 8 0 2 1 1 40.02 40.255 4 4.918E-07 10181 20211116_3436_TMUAki_TMT10x_P_F8 99.11 88.066 4536200 7277800 106970 9430100 12156000 10601000 6219000 7036800 7763900 5791900 7611300 4224500 6799000 580800 9485700 11513000 10647000 6666400 7297100 7825400 5707900 7347000 5 5 4 5 5 5 5 5 5 5 5 3150000 4951500 57341 6337600 11188000 9610100 5380100 4889600 5324500 4038500 5193400 2933400 4625400 425460 6416500 10585000 9482200 5759200 5184200 5414500 3979200 5014000 3 3 2 3 3 3 3 3 3 3 3 1386300 2326300 49632 3092400 968400 990880 838850 2147100 2439400 1753400 2417800 1291100 2173500 155330 3069200 928290 1165100 907200 2112900 2410800 1728700 2333100 2 2 2 2 2 2 2 2 2 2 2 489170000 253140000 236040000 16680 1521 15316 84766;84767 102542;102543;102544;102545;102546 102544 5 SALASVIMGLSPILGK Oxidation (M) 1571.8957 0.89566486 869 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 1 0 By MS/MS By MS/MS 6 0 2 1 1 80.765 80.759 3 1.131E-07 26435 20211116_3445_TMUAki_TMT10x_S_F6 112.96 89.359 5625600 9127900 11546 8839900 4806000 8816500 7477600 4797000 5224600 6049900 6333400 5238100 8516200 465680 9038100 4676100 8892800 7375400 5117600 5453100 5857000 6075300 2 2 2 2 2 2 2 2 2 2 2 2516000 4047800 8990.3 3891500 2276300 4586800 2873600 2367400 2544300 2717400 2785700 2342700 3776500 213620 3991400 2198200 4580000 2873400 2529500 2611300 2639500 2679800 1 1 1 1 1 1 1 1 1 1 1 3109600 5080100 2555.4 4948400 2529700 4229700 4604000 2429600 2680300 3332500 3547700 2895300 4739700 252060 5046700 2477900 4312800 4502000 2588100 2841700 3217500 3395500 1 1 1 1 1 1 1 1 1 1 1 717960000 257440000 460530000 16681 869 15317 84768;84769 102547;102548 102548 1041 2 SALASVIMGLSPILGK Unmodified 1555.9008 0.90075023 869 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 81.791 81.808 3 1.4152E-10 28997 20211116_3446_TMUAki_TMT10x_S_F7 124.09 100.86 1316500 1917900 0 2312900 949090 1113600 1760300 510760 513750 714660 1130900 1225800 1791100 103930 2313700 930420 1194900 1704500 555830 599100 689570 1071900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1316500 1917900 0 2312900 949090 1113600 1760300 510760 513750 714660 1130900 1225800 1791100 103930 2313700 930420 1194900 1704500 555830 599100 689570 1071900 1 1 0 1 1 1 1 1 1 1 1 508630000 0 508630000 16682 869 15317 84770;84771 102549 102549 1 SALFAQLNQGEAITK Unmodified 1589.8413 0.8413211 980 P40123;P40123-2 CAP2 Adenylyl cyclase-associated protein 2 yes no 0 0 0 0 By MS/MS 8 0 1 1 64.87 65.04 3 1.2919E-05 20265 20211116_3436_TMUAki_TMT10x_P_F8 99.451 75.702 16664000 27762000 267680 26924000 22872000 38957000 24199000 26404000 21509000 22054000 25442000 15517000 25902000 1567700 27706000 21970000 38663000 24393000 27349000 22139000 21718000 24421000 3 3 2 3 3 3 3 3 3 3 3 16664000 27762000 267680 26924000 22872000 38957000 24199000 26404000 21509000 22054000 25442000 15517000 25902000 1567700 27706000 21970000 38663000 24393000 27349000 22139000 21718000 24421000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 704920000 704920000 0 16683 980 15318 84772 102550;102551;102552 102552 3 SALGITVHQGR Unmodified 1137.6255 0.62545508 1682 Q14145 KEAP1 Kelch-like ECH-associated protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 32.129 32.144 3 0.057403 8770 20211116_3439_TMUAki_TMT10x_S_F1 38.96 26.734 2357500 3813100 15025 3281300 2730400 3084800 2606200 1536400 1745300 1771000 2537100 2195100 3556000 210340 3382100 2615600 3119900 2623400 1647200 1841300 1720000 2423000 2 2 1 2 2 2 2 2 2 2 2 1356600 2175600 15025 1895600 1768900 2278300 1512800 903660 988340 972030 1469700 1263300 2029000 132250 1959300 1690600 2266500 1531700 990200 1045500 946520 1402900 1 1 1 1 1 1 1 1 1 1 1 1000900 1637400 0 1385700 961480 806410 1093400 632710 756940 798960 1067400 931860 1527000 78093 1422700 924940 853350 1091800 657040 795800 773460 1020100 1 1 0 1 1 1 1 1 1 1 1 30141000 12113000 18028000 16684 1682 15319 84773;84774 102553 102553 1 SALGPGVPHIINTK Unmodified 1402.7932 0.79324869 2757 Q9GZS1;Q9GZS1-1 POLR1E DNA-directed RNA polymerase I subunit RPA49 yes no 0 0 0 0 By MS/MS 1 0 1 1 47.434 47.434 3 0.00032243 12981 20211116_3428_TMUAki_TMT10x_P_F1 70.98 56.104 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16685 2757 15320 84775 102554 102554 1 SALGPNVTK Unmodified 885.49198 0.4919813 2294 Q8WU90;Q8WU90-2 ZC3H15 Zinc finger CCCH domain-containing protein 15 yes no 0 0 0 0 By MS/MS 7 0 1 1 33.958 34.383 2 0.070339 9135 20211116_3435_TMUAki_TMT10x_P_F7 60.064 31.337 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16686 2294 15321 84776 102555 102555 1 SALIAALCDKDVETLEAPEGRPDSGVPSLR Unmodified 3165.5976 0.59759194 2333 Q8WZA9 IRGQ Immunity-related GTPase family Q protein yes yes 0 0 0 2 By MS/MS By MS/MS 5.8 1.17 1 1 1 2 3 2 72.042 72.156 4 1.5814E-114 24937 20211116_3446_TMUAki_TMT10x_S_F7 291.06 263.79 36412000 62072000 309850 52646000 42808000 60307000 44884000 25567000 24139000 26991000 43577000 33905000 57885000 3338000 54488000 41114000 60184000 44777000 27790000 26155000 26302000 41436000 8 8 6 8 8 8 8 8 8 8 8 24263000 40742000 144840 34655000 24245000 44226000 29017000 17287000 15581000 17245000 28535000 22592000 37993000 2094700 35927000 23373000 43859000 28768000 18934000 16899000 16844000 27126000 5 5 4 5 5 5 5 5 5 5 5 12149000 21331000 165010 17991000 18563000 16081000 15867000 8279700 8558100 9745900 15042000 11313000 19891000 1243300 18561000 17741000 16324000 16010000 8855800 9256400 9458000 14310000 3 3 2 3 3 3 3 3 3 3 3 5905700000 2646600000 3259100000 16687 2333 15322 84777;84778;84779;84780;84781 102556;102557;102558;102559;102560;102561;102562;102563 102563 8 SALLALGLK Unmodified 884.5695 0.56950333 1572 Q12874 SF3A3 Splicing factor 3A subunit 3 yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 68.66 68.533 2 0.00070047 22444 20211116_3442_TMUAki_TMT10x_S_F4 114.5 76.26 12918000 18184000 228470 19375000 14130000 21166000 15460000 17803000 20561000 18140000 16547000 12029000 16972000 1300800 19709000 13595000 21376000 15770000 18280000 20552000 17702000 16086000 2 2 2 2 2 2 2 2 2 2 2 7632000 9915400 120460 10639000 9812200 15425000 9854300 12589000 14375000 11984000 9822000 7107000 9254900 775540 10874000 9416700 15355000 10133000 12924000 14265000 11729000 9615900 1 1 1 1 1 1 1 1 1 1 1 5285500 8268200 108010 8736500 4317500 5740500 5606100 5213900 6186200 6156000 6724700 4922200 7716900 525310 8834800 4178700 6021000 5637100 5355900 6287100 5973500 6470400 1 1 1 1 1 1 1 1 1 1 1 763050000 524530000 238530000 16688 1572 15323 84782;84783;84784 102564;102565 102565 2 SALLPVLHHK Unmodified 1113.6659 0.66586334 2945 Q9NTI5;Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 39.497 39.396 4 0.0024119 9861 20211116_3440_TMUAki_TMT10x_S_F2 76.465 49.792 132970 245980 0 224460 130760 153460 137510 214940 204420 190380 199550 123770 229440 6535.1 229440 125260 162090 141200 214700 204860 186950 192650 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 132970 245980 0 224460 130760 153460 137510 214940 204420 190380 199550 123770 229440 6535.1 229440 125260 162090 141200 214700 204860 186950 192650 1 1 0 1 1 1 1 1 1 1 1 52881000 0 52881000 16689 2945 15324 84785;84786 102566 102566 1 SALPYSSFSSDQGLGESSAAPSQPITAVK Unmodified 2881.3981 0.39814707 1116 P49750;P49750-3;P49750-1 YLPM1 YLP motif-containing protein 1 yes no 0 0 0 0 By MS/MS 7 0 1 1 68.154 68.496 4 2.589E-06 23398 20211116_3446_TMUAki_TMT10x_S_F7 74.525 66.628 3786600 6229700 144590 6089000 5051400 6424500 5317600 6588600 7100100 7043000 6823900 3526800 5812500 466400 6226700 4858900 6527800 5435200 6704100 7135300 6859800 6591300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3786600 6229700 144590 6089000 5051400 6424500 5317600 6588600 7100100 7043000 6823900 3526800 5812500 466400 6226700 4858900 6527800 5435200 6704100 7135300 6859800 6591300 2 2 2 2 2 2 2 2 2 2 2 604440000 0 604440000 16690 1116 15325 84787 102567;102568 102567 2 SALRDAYCSEVK Unmodified 1397.6609 0.66091389 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 1 By MS/MS 5 0 1 1 37.797 37.785 3 0.00040828 9816 20211116_3433_TMUAki_TMT10x_P_F5 82.55 52.783 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16691 1057 15326 84788 102569 102569 1 SALRPSGLR Unmodified 955.55631 0.55631289 914 P34896;P34896-2;P34896-4;P34896-3 SHMT1 Serine hydroxymethyltransferase, cytosolic yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 29.227 28.973 3 0.0092151 7125 20211116_3429_TMUAki_TMT10x_P_F2 62.558 40.872 432960 690010 19431 634230 567210 610930 542950 422550 451560 385870 565600 403220 643640 49219 650610 544000 619580 549180 438030 467430 378370 542090 2 2 1 2 2 2 2 2 2 2 2 256070 412010 19431 368290 374640 475370 333500 241960 268380 227780 339610 238570 384280 41000 380410 359370 472430 338420 257360 278410 223050 325400 1 1 1 1 1 1 1 1 1 1 1 176900 278000 0 265940 192570 135560 209450 180600 183180 158090 225990 164660 259360 8219.4 270200 184630 147150 210760 180670 189020 155320 216680 1 1 0 1 1 1 1 1 1 1 1 22028000 12507000 9521500 16692 914 15327 84789;84790 102570;102571 102570 2 SALTIQLIQNHFVDEYDPTIEDSYRK Unmodified 3094.5247 0.52474457 477;478 P01111;P01116;P01112;P01112-2;P01116-2 NRAS;KRAS;HRAS GTPase NRas;GTPase KRas;GTPase KRas, N-terminally processed;GTPase HRas;GTPase HRas, N-terminally processed no no 0 0 0 1 By MS/MS By MS/MS 6.17 1.34 1 1 1 2 1 3 3 74.57 74.609 4 2.9869E-49 25961 20211116_3446_TMUAki_TMT10x_S_F7 203.79 193.08 10652000 19448000 207850 16963000 12592000 16912000 13532000 11674000 11310000 13207000 13583000 9919400 18138000 1070900 17480000 12108000 17115000 13608000 12179000 11684000 12835000 13033000 5 5 3 5 5 5 5 5 5 5 5 4898000 8527000 78147 7736000 4929600 9883300 5625500 5695600 5488500 6226100 6119600 4561100 7953600 479350 7980000 4749000 9841900 5665500 6018100 5612000 6058900 5883800 2 2 2 2 2 2 2 2 2 2 2 5754000 10921000 129700 9227400 7662800 7029100 7906900 5978100 5821200 6980700 7463900 5358300 10184000 591550 9500300 7359300 7272800 7942900 6161200 6071600 6776500 7149300 3 3 1 3 3 3 3 3 3 3 3 6254600000 3122900000 3131700000 16693 477;478 15328 84791;84792;84793;84794;84795;84796 102572;102573;102574;102575;102576 102574 5 SALVKPVTINVGR Unmodified 1352.814 0.81398414 3143 Q9UJV9 DDX41 Probable ATP-dependent RNA helicase DDX41 yes yes 0 0 0 1 By MS/MS 4 0 1 1 47.256 47.392 3 0.00046149 13331 20211116_3431_TMUAki_TMT10x_P_F4 78.069 49.437 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16694 3143 15329 84797 102577 102577 1 SAMPIEVMMNETAQQNMENHPVIR 4 Oxidation (M) 2833.2503 0.2503191 1516 Q05048 CSTF1 Cleavage stimulation factor subunit 1 yes yes 0 0 4 0 By MS/MS 3 0 1 1 36.002 35.762 4 2.3787E-07 11357 20211116_3441_TMUAki_TMT10x_S_F3 83.871 76.298 47421 89307 0 106550 51839 42942 43923 106830 119790 74146 106240 44141 83397 2314.4 106530 49397 49106 47315 104420 118060 73762 102910 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 47421 89307 0 106550 51839 42942 43923 106830 119790 74146 106240 44141 83397 2314.4 106530 49397 49106 47315 104420 118060 73762 102910 1 1 0 1 1 1 1 1 1 1 1 35255000 0 35255000 16695 1516 15330 84798 102578 102578 2054;2055;2056;2057 1 SANSELGGIWSVGQR Unmodified 1559.7692 0.76921879 2594 Q99627;Q99627-2 COPS8 COP9 signalosome complex subunit 8 yes no 0 0 0 0 By MS/MS 6 0 1 1 57.421 57.477 3 0.016787 16890 20211116_3445_TMUAki_TMT10x_S_F6 48.677 34.519 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16696 2594 15331 84799 102579 102579 1 SANVNEFPVLK Unmodified 1216.6452 0.64518747 1234 P55060;P55060-3;P55060-4 CSE1L Exportin-2 yes no 0 0 0 0 By MS/MS By MS/MS 5.78 0.916 1 2 4 2 5 4 56.036 56.357 2;3 1.7202E-17 16103 20211116_3444_TMUAki_TMT10x_S_F5 193.96 146.14 23757000 37496000 180100 51348000 45049000 46664000 27174000 38018000 41083000 33551000 38321000 22119000 35039000 2208100 51335000 42742000 47632000 28929000 38957000 41089000 32952000 37053000 6 6 3 6 6 6 6 6 6 6 6 13988000 20613000 89463 27964000 38573000 39711000 21452000 21718000 23323000 18824000 21591000 13023000 19262000 1408000 28184000 36549000 39326000 22712000 22903000 23584000 18504000 20882000 4 4 2 4 4 4 4 4 4 4 4 9768800 16883000 90640 23385000 6476500 6953000 5722300 16300000 17760000 14727000 16730000 9096000 15778000 800030 23151000 6193400 8306800 6216500 16054000 17504000 14448000 16171000 2 2 1 2 2 2 2 2 2 2 2 4152300000 2483500000 1668800000 16697 1234 15332 84800;84801;84802;84803;84804;84805;84806;84807;84808 102580;102581;102582;102583;102584;102585;102586;102587;102588;102589 102586 10 SAPATGGVK Unmodified 786.42357 0.42356738 1421 P68431;Q71DI3;Q16695 HIST1H3A;HIST2H3A;HIST3H3 Histone H3.1;Histone H3.2;Histone H3.1t yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 29.977 29.963 2 0.00032586 6355 20211116_3431_TMUAki_TMT10x_P_F4 128.38 78.257 1576500 2585100 1612.1 2040100 1513800 1932500 1371100 617130 666840 653850 1553800 1467600 2410100 98141 2118100 1445800 1945800 1376400 694930 740690 637070 1471400 2 2 1 2 2 2 2 2 2 2 2 1576500 2585100 1612.1 2040100 1513800 1932500 1371100 617130 666840 653850 1553800 1467600 2410100 98141 2118100 1445800 1945800 1376400 694930 740690 637070 1471400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 52770000 52770000 0 16698 1421 15333 84809;84810 102590;102591 102590 2 SAPCGSLAFSGDR Unmodified 1323.5877 0.58774895 1435 P78559;P78559-2 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 yes no 0 0 0 0 By MS/MS 4 0 1 1 37.939 38.097 2 5.5446E-23 10059 20211116_3442_TMUAki_TMT10x_S_F4 214.82 176.53 119760 199020 1849.5 241720 100060 95429 118320 136840 138760 116040 180160 111520 185870 11376 241390 96510 107170 119690 136410 141740 114190 172510 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 119760 199020 1849.5 241720 100060 95429 118320 136840 138760 116040 180160 111520 185870 11376 241390 96510 107170 119690 136410 141740 114190 172510 1 1 1 1 1 1 1 1 1 1 1 19371000 0 19371000 16699 1435 15334 84811 102592 102592 1 SAPFFIPTIPGLVPR Unmodified 1610.9184 0.91844921 2259 Q8NI36 WDR36 WD repeat-containing protein 36 yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 4 2 2 80.124 80.118 2;3 2.4614E-33 26152 20211116_3445_TMUAki_TMT10x_S_F6 227.36 200.98 14794000 24613000 0 20965000 18085000 21046000 19106000 14686000 14335000 15806000 18632000 13773000 22953000 992560 21647000 17348000 21293000 19179000 15286000 14945000 15391000 17841000 4 4 0 4 4 4 4 4 4 4 4 6237300 9524200 0 8288000 5794100 10362000 7049300 6197800 6040600 6471900 7469300 5806900 8882400 437760 8573500 5582500 10335000 7053600 6519800 6240100 6309500 7161100 2 2 0 2 2 2 2 2 2 2 2 8556900 15089000 0 12677000 12291000 10684000 12057000 8487800 8294900 9334600 11163000 7965600 14070000 554800 13073000 11766000 10958000 12125000 8766000 8705000 9081700 10680000 2 2 0 2 2 2 2 2 2 2 2 3865700000 1608200000 2257500000 16700 2259 15335 84812;84813;84814;84815 102593;102594;102595;102596 102596 4 SAPGGGSKVPQK Unmodified 1111.5986 0.59857163 524 P06748;P06748-3;P06748-2 NPM1 Nucleophosmin yes no 0 0 0 1 By MS/MS 1 0 1 1 30.976 31.025 3 0.036679 8357 20211116_3439_TMUAki_TMT10x_S_F1 52.891 33.76 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16701 524 15336 84816 102597 102597 1 SAPGGGSKVPQKK Unmodified 1239.6935 0.69353465 524 P06748;P06748-3;P06748-2 NPM1 Nucleophosmin yes no 0 0 0 2 By MS/MS 2 0 1 1 30.318 30.088 4 0.0035705 7586 20211116_3429_TMUAki_TMT10x_P_F2 67.326 53.818 288650 440530 1439.3 323950 366860 628710 335730 479340 381910 356670 379360 268770 410630 26368 343280 351070 618330 343600 491230 386420 353400 366040 1 1 1 1 1 1 1 1 1 1 1 288650 440530 1439.3 323950 366860 628710 335730 479340 381910 356670 379360 268770 410630 26368 343280 351070 618330 343600 491230 386420 353400 366040 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19797000 19797000 0 16702 524 15337 84817 102598 102598 1 SAPPQLPSFYK Unmodified 1233.6394 0.63937381 2125 Q86XP3 DDX42 ATP-dependent RNA helicase DDX42 yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 59.046 58.803 3 0.0010702 17626 20211116_3428_TMUAki_TMT10x_P_F1 76.655 62.397 9005000 14358000 80615 13977000 10007000 10802000 9234200 11395000 10352000 10542000 11913000 8385100 13396000 825490 14239000 9579800 11214000 9441700 11530000 10538000 10331000 11444000 4 4 2 4 4 4 4 4 4 4 4 1587800 2391700 0 2543200 2605900 3522500 2202700 1976200 1900400 1784800 2134900 1478300 2232300 142330 2598400 2488300 3493300 2246000 2081600 1954900 1751100 2052200 1 1 0 1 1 1 1 1 1 1 1 7417300 11966000 80615 11434000 7400900 7279600 7031500 9419000 8452000 8757600 9778500 6906800 11164000 683160 11640000 7091500 7720300 7195700 9448900 8583400 8580400 9391900 3 3 2 3 3 3 3 3 3 3 3 501570000 245530000 256040000 16703 2125 15338 84818;84819;84820 102599;102600;102601;102602;102603 102599 5 SAPPTRGPPPSYGGSSR Unmodified 1669.8172 0.81723161 969 P38159;P38159-2 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed yes no 0 0 0 1 By MS/MS By MS/MS 1 0 3 2 1 25.271 25.306 3 2.6414E-29 3965 20211116_3428_TMUAki_TMT10x_P_F1 187.47 156.47 257880 387910 3628.6 429540 460570 378300 288060 297750 371430 261900 391190 240140 362120 25215 434490 437500 386740 303790 305720 374920 257260 376750 3 3 2 3 3 3 3 3 3 3 3 120230 182930 811.83 194400 280230 252450 143250 149500 178360 125960 181350 111950 170740 10580 198380 265300 251290 153560 156490 180020 123990 174850 2 2 1 2 2 2 2 2 2 2 2 137640 204980 2816.8 235140 180350 125840 144810 148240 193070 135930 209830 128180 191380 14635 236110 172200 135450 150230 149220 194900 133260 201900 1 1 1 1 1 1 1 1 1 1 1 37224000 16011000 21213000 16704 969 15339 84821;84822;84823 102604;102605;102606 102604 3 SAPSRPQQAGYEAPVLFR Unmodified 1973.0119 0.011908675 2954 Q9NUP1 BLOC1S4 Biogenesis of lysosome-related organelles complex 1 subunit 4 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 44.584 44.504 3 3.8577E-50 11781 20211116_3428_TMUAki_TMT10x_P_F1 219.96 197.9 1746100 3038400 10896 3815600 2441400 2676600 1859500 2748100 2714800 2236700 2532800 1625900 2838100 164660 3820600 2327000 2798600 1943100 2775200 2718000 2205600 2448900 3 3 3 3 3 3 3 3 3 3 3 773530 1343900 4960.4 1735000 1487700 1820600 1183400 1241000 1161900 919110 1057900 720270 1255400 78756 1743700 1419100 1836400 1215600 1281400 1179300 910920 1023700 1 1 1 1 1 1 1 1 1 1 1 972570 1694500 5935.4 2080600 953700 855970 676080 1507100 1552900 1317600 1474900 905600 1582600 85900 2077000 907830 962180 727440 1493800 1538700 1294700 1425200 2 2 2 2 2 2 2 2 2 2 2 326510000 190770000 135730000 16705 2954 15340 84824;84825;84826;84827 102607;102608;102609;102610 102607 4 SAPTAPTPPPPPPPATPR Unmodified 1747.9257 0.92571943 1693 Q14202;Q14202-2 ZMYM3 Zinc finger MYM-type protein 3 yes no 0 0 0 0 By MS/MS 7 0 1 1 39.138 39.577 3 0.0094974 11188 20211116_3435_TMUAki_TMT10x_P_F7 48.288 26.09 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16706 1693 15341 84828 102611 102611 1 SAPWNSFLPPPPPMPGPR Oxidation (M) 1959.9665 0.96653839 1857 Q16637;Q16637-3;Q16637-4;Q16637-2 SMN1 Survival motor neuron protein yes no 0 0 1 0 By MS/MS By MS/MS 4 0 2 1 1 72.832 72.878 3 0.0020588 23722 20211116_3431_TMUAki_TMT10x_P_F4 60.307 45.365 4654100 8021200 39119 6535400 5028400 9932300 6208100 6260300 5815200 6179600 6276100 4333600 7479100 418870 6822900 4853000 9826400 6223300 6548000 5949600 6038600 6040100 2 2 1 2 2 2 2 2 2 2 2 4654100 8021200 39119 6535400 5028400 9932300 6208100 6260300 5815200 6179600 6276100 4333600 7479100 418870 6822900 4853000 9826400 6223300 6548000 5949600 6038600 6040100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 578640000 578640000 0 16707 1857 15342 84829;84830 102612;102613;102614 102612 2471 3 SAPYEFPEESPIEQLEER Unmodified 2148.9851 0.98514438 1481 Q01433;Q01433-2;Q01433-3;Q01433-5;Q01433-4 AMPD2 AMP deaminase 2 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 71.155 71.155 3 9.7964E-05 24668 20211116_3439_TMUAki_TMT10x_S_F1 73.057 61.583 4061500 5813300 127350 5775800 3739000 6852000 4427600 4110900 3740600 3941300 4601100 3782600 5424300 450900 5911000 3610100 6852400 4433800 4313000 3866000 3856200 4411800 1 1 1 1 1 1 1 1 1 1 1 4061500 5813300 127350 5775800 3739000 6852000 4427600 4110900 3740600 3941300 4601100 3782600 5424300 450900 5911000 3610100 6852400 4433800 4313000 3866000 3856200 4411800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 418550000 418550000 0 16708 1481 15343 84831;84832 102615;102616 102616 2 SAQFEHTLLVTDTGCEILTR Unmodified 2290.1263 0.12634609 1201 P53582 METAP1 Methionine aminopeptidase 1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 61.962 61.824 3 5.3639E-07 19719 20211116_3442_TMUAki_TMT10x_S_F4 94.837 85.256 1581700 2724200 0 2357100 1665100 1520800 1554100 2345700 2077800 2028800 2223100 1472600 2540600 116560 2418100 1592800 1619400 1598400 2333800 2096100 1994400 2140100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1581700 2724200 0 2357100 1665100 1520800 1554100 2345700 2077800 2028800 2223100 1472600 2540600 116560 2418100 1592800 1619400 1598400 2333800 2096100 1994400 2140100 1 1 0 1 1 1 1 1 1 1 1 382860000 0 382860000 16709 1201 15344 84833 102617 102617 1 SAQPLPLKIEELALAK Unmodified 1720.0135 0.013471805 3160 Q9UKV3;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 76.755 76.786 3 1.8258E-21 25103 20211116_3436_TMUAki_TMT10x_P_F8 173.27 147.95 34319000 60554000 453570 41920000 47430000 75254000 47066000 64348000 62649000 62563000 53733000 31958000 56434000 3451600 44580000 45496000 74362000 48243000 65922000 62737000 61175000 52110000 4 4 4 4 4 4 4 4 4 4 4 18071000 31668000 148910 21745000 22323000 50153000 27343000 33133000 33318000 32883000 28849000 16827000 29513000 1696600 23309000 21540000 48958000 27658000 34538000 33475000 32126000 27968000 2 2 2 2 2 2 2 2 2 2 2 16248000 28886000 304660 20175000 25107000 25101000 19723000 31215000 29331000 29679000 24884000 15131000 26921000 1755100 21271000 23957000 25405000 20585000 31383000 29261000 29050000 24142000 2 2 2 2 2 2 2 2 2 2 2 5550200000 2963000000 2587200000 16710 3160 15345 84834;84835;84836;84837 102618;102619;102620;102621 102619 4 SAQTFLSEIR Unmodified 1150.5982 0.59823728 1438 Q9BWW4;P81877;Q9BWG4;P81877-2;P81877-4;P81877-5;P81877-3;Q9BWW4-2;Q9BWG4-2;Q9BWW4-3 SSBP3;SSBP2;SSBP4 Single-stranded DNA-binding protein 3;Single-stranded DNA-binding protein 2;Single-stranded DNA-binding protein 4 yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 56.371 56.504 2 5.9904E-09 16498 20211116_3445_TMUAki_TMT10x_S_F6 177.78 118.86 9463900 16113000 100190 17513000 12092000 13030000 9675200 10860000 10308000 10100000 12498000 8812600 15041000 914810 17700000 11540000 13502000 9959900 11129000 10536000 9895400 11989000 2 2 2 2 2 2 2 2 2 2 2 3532000 5658400 49430 6313900 6603300 8018900 4695700 4304500 4198800 3838000 4745000 3289000 5282300 381910 6420400 6286600 7980500 4847500 4550000 4312700 3767600 4560500 1 1 1 1 1 1 1 1 1 1 1 5931900 10455000 50758 11199000 5489200 5011500 4979400 6556000 6108700 6261800 7753400 5523500 9758300 532900 11280000 5253500 5521800 5112500 6578900 6223500 6127700 7428500 1 1 1 1 1 1 1 1 1 1 1 1229800000 457230000 772550000 16711 1438 15346 84838;84839;84840 102622;102623;102624 102624 3 SASASPLTPCSVTR Unmodified 1432.698 0.69802768 1883 Q3KQU3;Q3KQU3-2;Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 yes no 0 0 0 0 By MS/MS 7 0 2 2 32 32.375 2 5.4048E-06 8735 20211116_3435_TMUAki_TMT10x_P_F7 87.363 68.12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16712 1883 15347 84841;84842 102625;102626 102626 2 SASLCAATLAAVLQR Unmodified 1530.8188 0.81881152 1188 P52789 HK2 Hexokinase-2 yes yes 0 0 0 0 By MS/MS 3.67 0.471 1 2 3 72.153 71.782 2;3 5.7607E-33 23706 20211116_3442_TMUAki_TMT10x_S_F4 202 162 862860 1432900 15321 1394000 1037000 1081800 959120 1012700 948810 1086300 1189200 803520 1336900 88255 1420200 993260 1119800 976630 1035300 974230 1057900 1139800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 862860 1432900 15321 1394000 1037000 1081800 959120 1012700 948810 1086300 1189200 803520 1336900 88255 1420200 993260 1119800 976630 1035300 974230 1057900 1139800 1 1 1 1 1 1 1 1 1 1 1 398260000 0 398260000 16713 1188 15348 84843;84844;84845 102627;102628;102629 102628 3 SASSASSLFSPSSTLFSSSR Unmodified 1991.9436 0.94361392 1719 Q14671;Q14671-4;Q14671-2;Q14671-3 PUM1 Pumilio homolog 1 yes no 0 0 0 0 By matching By MS/MS 3 0 2 1 1 67.158 66.782 3 1.1008E-18 23993 20211116_3441_TMUAki_TMT10x_S_F3 155.49 136.66 4924500 9311600 85660 7839700 6475600 5398200 6159700 6109700 5441300 5664100 6753300 4585800 8683200 506130 8065300 6206100 5665900 6242300 6162700 5613600 5550200 6474100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4924500 9311600 85660 7839700 6475600 5398200 6159700 6109700 5441300 5664100 6753300 4585800 8683200 506130 8065300 6206100 5665900 6242300 6162700 5613600 5550200 6474100 2 2 1 2 2 2 2 2 2 2 2 1618900000 965250000 653610000 16714 1719 15349 84846;84847 102630;102631 102630 2 SASSLLEQRPK Acetyl (Protein N-term) 1256.6725 0.67246486 3314 Q9Y5A9 YTHDF2 YTH domain-containing family protein 2 yes yes 1 0 0 1 By MS/MS By MS/MS 4.33 0.471 4 2 3 3 43.065 43.228 2;3 9.5582E-18 11975 20211116_3433_TMUAki_TMT10x_P_F5 105.36 77.185 3762800 5751600 2324.4 7313700 5008200 4382400 3286600 5406800 6124500 4687000 5694200 3503300 5372700 299990 7307000 4756900 4668300 3511600 5424000 6091200 4607200 5506300 4 4 1 4 4 4 4 4 4 4 4 934640 1367000 0 1625600 2809900 2317700 1264100 1200400 1340200 1003600 1410000 870140 1276500 91684 1650400 2654600 2293300 1365400 1271000 1362600 988300 1358000 1 1 0 1 1 1 1 1 1 1 1 2828100 4384600 2324.4 5688100 2198300 2064700 2022600 4206400 4784300 3683400 4284200 2633100 4096200 208300 5656500 2102300 2375000 2146300 4153100 4728600 3618900 4148300 3 3 1 3 3 3 3 3 3 3 3 719790000 351780000 368010000 16715 3314 15350 84848;84849;84850;84851;84852;84853 102632;102633;102634;102635;102636;102637 102634 6 SASVVSVISR Unmodified 1003.5662 0.56620887 1320 P61803 DAD1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 yes yes 0 0 0 0 By MS/MS 7 0 1 1 40.523 41.155 2 0.0013231 12207 20211116_3446_TMUAki_TMT10x_S_F7 83.358 55.833 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16716 1320 15351 84854 102638 102638 1 SATAATAPPAAPAGEGGPPAPPPNLTSNRR Acetyl (Protein N-term) 2835.4264 0.42636793 1392 P63027 VAMP2 Vesicle-associated membrane protein 2 yes yes 1 0 0 1 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 44.199 44.343 3 1.9959E-64 11438 20211116_3445_TMUAki_TMT10x_S_F6 146.8 129.66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16717 1392 15352 84855;84856;84857 102639;102640;102641 102641 3 SATIVADLSETTIQTPDGEER Unmodified 2232.0758 0.075750303 2928 Q9NRG9;Q9NRG9-2 AAAS Aladin yes no 0 0 0 0 By MS/MS 3 0 1 1 66.114 65.651 3 0.004337 23550 20211116_3441_TMUAki_TMT10x_S_F3 52.72 43.062 3350100 6100100 0 5238700 4263700 3881300 3259500 4257300 4092700 4131600 4477000 3119000 5688800 260630 5384800 4061000 4046200 3384500 4305800 4140800 4040300 4306900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3350100 6100100 0 5238700 4263700 3881300 3259500 4257300 4092700 4131600 4477000 3119000 5688800 260630 5384800 4061000 4046200 3384500 4305800 4140800 4040300 4306900 1 1 0 1 1 1 1 1 1 1 1 423730000 0 423730000 16718 2928 15353 84858 102642 102642 1 SATLASIDAELQK Unmodified 1345.7089 0.70890994 906 P33176 KIF5B Kinesin-1 heavy chain yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 63.029 63.136 2;3 2.1539E-22 19802 20211116_3431_TMUAki_TMT10x_P_F4 181.4 158.76 4551900 7110400 0 7084900 6619500 9245500 5894000 4743700 4845500 5347500 5640800 4238200 6634600 393710 7261800 6328100 9184200 5984000 5068400 5003500 5197800 5416900 1 1 0 1 1 1 1 1 1 1 1 4551900 7110400 0 7084900 6619500 9245500 5894000 4743700 4845500 5347500 5640800 4238200 6634600 393710 7261800 6328100 9184200 5984000 5068400 5003500 5197800 5416900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 490920000 490920000 0 16719 906 15354 84859;84860;84861 102643;102644;102645 102644 3 SATREPPYRVPR Unmodified 1427.7633 0.76334555 1026 P43243 MATR3 Matrin-3 yes yes 0 0 0 2 By MS/MS By MS/MS 1.25 0.433 6 2 6 2 25.618 25.584 3;4 2.3436E-17 6473 20211116_3429_TMUAki_TMT10x_P_F2 216.83 173.52 2140900 3304700 26591 3227100 2976400 3159000 2358200 2326800 2622800 2147000 2735700 1993500 3083300 206490 3296600 2839600 3203600 2432600 2402300 2660700 2104300 2635600 8 8 4 8 8 8 8 8 8 8 8 1150800 1703600 25440 1632000 1816500 2074000 1165500 1232500 1375800 1152200 1381400 1071700 1589300 126640 1676600 1726900 2066700 1222800 1293200 1390700 1128600 1332400 6 6 3 6 6 6 6 6 6 6 6 990040 1601100 1151.3 1595000 1159900 1084900 1192700 1094300 1247000 994760 1354400 921790 1494000 79846 1620000 1112700 1136900 1209800 1109100 1270000 975630 1303200 2 2 1 2 2 2 2 2 2 2 2 342870000 190710000 152160000 16720 1026 15355 84862;84863;84864;84865;84866;84867;84868;84869 102646;102647;102648;102649;102650;102651 102648 6 SATSPEGK Unmodified 775.3712 0.37119746 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 By MS/MS 3 0 1 1 27.987 27.704 2 0.0068747 8184 20211116_3441_TMUAki_TMT10x_S_F3 91.069 56.244 187110 267760 0 193920 139270 220860 153670 93439 88953 78708 167810 174210 249570 13034 203450 133780 220480 153120 100990 96125 77477 159430 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 187110 267760 0 193920 139270 220860 153670 93439 88953 78708 167810 174210 249570 13034 203450 133780 220480 153120 100990 96125 77477 159430 1 1 0 1 1 1 1 1 1 1 1 4221200 0 4221200 16721 653 15356 84870 102652 102652 1 SAVDQAGGAQIVIDHLR Unmodified 1748.9169 0.91694566 1175 P52306;P52306-4;P52306-5 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 53.155 53.356 3 3.7322E-10 14924 20211116_3444_TMUAki_TMT10x_S_F5 114.4 96.7 8995300 14200000 72804 15864000 19331000 24028000 12828000 14602000 14959000 14306000 14205000 8375800 13256000 937270 16188000 18375000 23763000 13418000 15313000 15098000 13984000 13726000 2 2 1 2 2 2 2 2 2 2 2 8995300 14200000 72804 15864000 19331000 24028000 12828000 14602000 14959000 14306000 14205000 8375800 13256000 937270 16188000 18375000 23763000 13418000 15313000 15098000 13984000 13726000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 563140000 563140000 0 16722 1175 15357 84871;84872;84873 102653;102654;102655;102656 102656 4 SAVEDEGLK Unmodified 946.46074 0.46074075 596 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 0 0 By MS/MS By MS/MS 1.83 0.687 2 3 1 2 4 36.205 36.147 2;3 7.092E-05 8168 20211116_3440_TMUAki_TMT10x_S_F2 143.86 84.061 2741900 4694500 9732.8 4323100 4005300 3794500 3570700 2479100 2566500 2416100 3740100 2552900 4379000 234740 4428600 3828800 3868600 3613600 2585100 2696500 2362300 3571600 5 5 1 5 5 5 5 5 5 5 5 1316200 2214000 0 2058800 2193800 2401500 1541900 1124100 1149600 1145700 1740400 1225300 2065300 105780 2116400 2086100 2396600 1585900 1208100 1207600 1118100 1660600 1 1 0 1 1 1 1 1 1 1 1 1425800 2480400 9732.8 2264300 1811500 1393000 2028800 1354900 1416900 1270400 1999700 1327600 2313700 128960 2312200 1742700 1472000 2027600 1377000 1488900 1244200 1911000 4 4 1 4 4 4 4 4 4 4 4 146630000 73007000 73627000 16723 596 15358 84874;84875;84876;84877;84878;84879 102657;102658;102659;102660;102661 102659 5 SAVENCQDSWR Unmodified 1350.5623 0.56226248 1170 P52209;P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 By MS/MS By matching 2.5 0.5 1 1 1 1 33.957 33.726 2 0.0076422 9013 20211116_3429_TMUAki_TMT10x_P_F2 67.385 50.609 280470 445550 3025.7 518360 906590 587770 386620 296410 352770 263290 375770 261170 416020 34842 524700 856390 587950 418310 315090 361180 258500 361780 1 1 1 1 1 1 1 1 1 1 1 280470 445550 3025.7 518360 906590 587770 386620 296410 352770 263290 375770 261170 416020 34842 524700 856390 587950 418310 315090 361180 258500 361780 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32528000 21366000 11162000 16724 1170 15359 84880;84881 102662 102662 1 SAVENCQDSWRR Unmodified 1506.6634 0.66337351 1170 P52209;P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 1 By MS/MS 4 0 1 1 29.962 30.001 3 1.3297E-12 6359 20211116_3431_TMUAki_TMT10x_P_F4 177.41 142.4 268090 398750 0 443710 789640 382580 357110 139590 158940 160330 327690 249610 372240 28263 448570 746190 388060 378720 154810 176360 155730 310890 1 1 0 1 1 1 1 1 1 1 1 268090 398750 0 443710 789640 382580 357110 139590 158940 160330 327690 249610 372240 28263 448570 746190 388060 378720 154810 176360 155730 310890 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27116000 27116000 0 16725 1170 15360 84882 102663 102663 1 SAVGFEYQGK Unmodified 1084.5189 0.51892433 1699 Q14247;Q14247-3;Q14247-2 CTTN Src substrate cortactin yes no 0 0 0 0 By MS/MS 5 0 1 1 44.624 44.768 2 1.3586E-08 11414 20211116_3444_TMUAki_TMT10x_S_F5 127.76 85.69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16726 1699 15361 84883 102664 102664 1 SAVPFLPVNPEYSATR Unmodified 1746.8941 0.89408495 3255 Q9Y2X7;Q9Y2X7-3 GIT1 ARF GTPase-activating protein GIT1 yes no 0 0 0 0 By MS/MS 7.5 0.5 2 2 4 66.559 66.914 2;3 1.5242E-21 21018 20211116_3436_TMUAki_TMT10x_P_F8 153.64 116.53 4177700 6305400 75180 6349300 4175600 7754000 5508600 4245900 3605500 4231400 4832600 3890400 5883800 416390 6495300 4041800 7733800 5459000 4493600 3794800 4133200 4623900 1 1 1 1 1 1 1 1 1 1 1 4177700 6305400 75180 6349300 4175600 7754000 5508600 4245900 3605500 4231400 4832600 3890400 5883800 416390 6495300 4041800 7733800 5459000 4493600 3794800 4133200 4623900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1201900000 1201900000 0 16727 3255 15362 84884;84885;84886;84887 102665;102666;102667 102667 3 SAVPGDLLTLPGTTEHLR Unmodified 1876.0054 0.005426314 2445 Q96EK9 KTI12 Protein KTI12 homolog yes yes 0 0 0 0 By MS/MS 6 0 1 1 61.13 61.137 3 0.0070009 18469 20211116_3445_TMUAki_TMT10x_S_F6 52.298 33.934 3138000 5262600 50198 6010800 3351400 3260100 2844100 3551300 3257700 3374400 3886200 2922100 4913400 309930 6038000 3203800 3497400 2924200 3590700 3318400 3302900 3729400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3138000 5262600 50198 6010800 3351400 3260100 2844100 3551300 3257700 3374400 3886200 2922100 4913400 309930 6038000 3203800 3497400 2924200 3590700 3318400 3302900 3729400 1 1 1 1 1 1 1 1 1 1 1 261880000 0 261880000 16728 2445 15363 84888 102668 102668 1 SAVPPGADKKAEAGAGSATEFQFR Unmodified 2391.1819 0.18188713 1056 P46783 RPS10 40S ribosomal protein S10 yes yes 0 0 0 2 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 46.447 46.827 4 5.4562E-29 14601 20211116_3446_TMUAki_TMT10x_S_F7 166.79 154.59 1957800 4010100 11444 3449300 4050300 7072200 3070600 18117000 12401000 8701300 6930300 1822800 3739700 173620 3612700 3857800 7229400 3454700 17581000 12013000 8886000 6854800 3 3 1 3 3 3 3 3 3 3 3 617090 1236000 0 966780 1977100 5059000 1900700 6913300 4677600 3346000 2464400 574560 1152300 68711 1066500 1893700 4943000 2017900 6828600 4558600 3414800 2445800 1 1 0 1 1 1 1 1 1 1 1 1340700 2774100 11444 2482500 2073200 2013200 1169900 11204000 7723300 5355300 4465900 1248200 2587400 104910 2546200 1964100 2286400 1436800 10752000 7454700 5471200 4409000 2 2 1 2 2 2 2 2 2 2 2 796270000 509370000 286900000 16729 1056 15364 84889;84890;84891 102669;102670;102671 102670 3 SAYALCTFALSTGDPSQPVR Unmodified 2140.0259 0.02590376 2722 Q9BY32;Q9BY32-2;Q9BY32-3 ITPA Inosine triphosphate pyrophosphatase yes no 0 0 0 0 By MS/MS 8 0 1 1 68.01 68.131 3 5.3737E-14 21522 20211116_3436_TMUAki_TMT10x_P_F8 139.9 130.86 4752600 8291300 19585 7647600 5456300 9811700 6077400 6112600 5542100 5291200 6328900 4425200 7734200 415430 7879700 5248100 9778900 6115500 6377000 5689500 5201500 6080900 3 3 2 3 3 3 3 3 3 3 3 4752600 8291300 19585 7647600 5456300 9811700 6077400 6112600 5542100 5291200 6328900 4425200 7734200 415430 7879700 5248100 9778900 6115500 6377000 5689500 5201500 6080900 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 956950000 956950000 0 16730 2722 15365 84892 102672;102673;102674 102674 3 SAYDSTMETMNYAQIR Oxidation (M) 1895.803 0.80296304 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 1 0 By MS/MS By MS/MS 4 0.632 1 3 1 2 3 46.735 46.843 3 8.5586E-08 13149 20211116_3431_TMUAki_TMT10x_P_F4 115.06 104.73 4025000 6374300 16328 7755200 6921400 7272900 4789200 4964900 4829700 4409400 5514300 3747400 5953000 344340 7806900 6581000 7387100 4970600 5147900 4936000 4329300 5298200 4 4 2 4 4 4 4 4 4 4 4 2740800 4269900 16328 5220500 5898100 6392700 3901100 3475500 3424500 3142300 3910000 2551900 3987800 265510 5276200 5604800 6374600 4046800 3670900 3521900 3082700 3756800 3 3 2 3 3 3 3 3 3 3 3 1284200 2104400 0 2534700 1023300 880240 888040 1489400 1405300 1267000 1604300 1195500 1965200 78829 2530700 976230 1012500 923860 1477000 1414100 1246600 1541500 1 1 0 1 1 1 1 1 1 1 1 746020000 596000000 150020000 16731 1200 15366 84893;84894;84895;84896;84897 102675;102676;102677;102678;102679;102680 102677 1607;1608 6 SAYDSTMETMNYAQIR 2 Oxidation (M) 1911.7979 0.79787766 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 2 0 By MS/MS By MS/MS 3.4 0.8 1 1 3 1 4 39.902 39.933 2;3 2.1244E-11 10609 20211116_3442_TMUAki_TMT10x_S_F4 139.15 129.94 1571900 2426100 1958.1 3170200 3538400 3568400 2104700 3106200 3812000 2223600 2671100 1463400 2266600 131990 3187500 3355500 3600300 2262800 3155000 3762900 2208000 2612000 5 5 1 5 5 5 5 5 5 5 5 1023600 1560700 0 1993300 3085700 3209300 1714200 2008100 2386900 1496800 1686900 952940 1457900 95529 2021200 2923100 3167400 1831300 2087000 2374000 1482900 1648900 2 2 0 2 2 2 2 2 2 2 2 548280 865420 1958.1 1176800 452690 359100 390580 1098100 1425100 726760 984220 510500 808690 36461 1166300 432410 432880 431460 1068100 1388900 725090 963090 3 3 1 3 3 3 3 3 3 3 3 581340000 374250000 207090000 16732 1200 15366 84898;84899;84900;84901;84902 102681;102682;102683;102684;102685;102686 102686 1607;1608 6 SAYEFSETESMLK Oxidation (M) 1536.6654 0.66539015 589 P09960;P09960-2;P09960-4;P09960-3 LTA4H Leukotriene A-4 hydrolase yes no 0 0 1 0 By MS/MS 3.5 0.5 1 1 2 52.496 52.662 3 0.0071585 15516 20211116_3431_TMUAki_TMT10x_P_F4 59.13 46.149 4391500 6170500 166420 6838600 7175700 9201800 5608200 6131500 5856600 5200900 7140100 4090100 5760300 558180 6964600 6851000 9159400 5778200 6361200 5992800 5117800 6848000 1 1 1 1 1 1 1 1 1 1 1 4391500 6170500 166420 6838600 7175700 9201800 5608200 6131500 5856600 5200900 7140100 4090100 5760300 558180 6964600 6851000 9159400 5778200 6361200 5992800 5117800 6848000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 422430000 422430000 0 16733 589 15367 84903;84904 102687;102688 102688 568 2 SAYNVYVAER Unmodified 1170.5669 0.56693715 1464 Q00059 TFAM Transcription factor A, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.866 3 2 3 5 3 38.883 38.97 2 3.9168E-07 10402 20211116_3433_TMUAki_TMT10x_P_F5 113.44 81.574 2522700 3952100 34972 4933600 5189300 4383600 2833000 3289300 3850900 2783100 3664400 2349000 3691400 265450 4955500 4917800 4475000 3028400 3384400 3866500 2739000 3540700 3 3 1 3 3 3 3 3 3 3 3 1510500 2267400 34972 2816200 4183400 3543900 1946600 1889600 2328100 1595300 2141400 1406700 2117700 195260 2845100 3957100 3528300 2103300 1995900 2345100 1570100 2071500 1 1 1 1 1 1 1 1 1 1 1 1012200 1684700 0 2117400 1005900 839640 886460 1399700 1522800 1187900 1523000 942310 1573700 70190 2110400 960650 946770 925120 1388500 1521300 1168900 1469200 2 2 0 2 2 2 2 2 2 2 2 614440000 415010000 199430000 16734 1464 15368 84905;84906;84907;84908;84909;84910;84911;84912 102689;102690;102691;102692;102693;102694;102695 102692 7 SCAHDWVYE Unmodified 1165.4499 0.44985848 770 P22392-2;P22392;O60361 NME2;NME2P1 Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 41.255 41.187 2 0.0065908 12119 20211116_3429_TMUAki_TMT10x_P_F2 69.998 63.963 1281100 1924400 8043.7 2542900 1774500 1507500 1197000 1410200 1470000 1450500 1823100 1192800 1798000 113890 2535000 1687000 1597400 1252800 1439900 1496000 1415000 1747800 3 3 1 3 3 3 3 3 3 3 3 399610 531640 0 749770 1062100 908140 532150 390810 378170 447530 502040 372070 496890 41833 751850 1005100 903760 562730 425160 395860 434740 480470 1 1 0 1 1 1 1 1 1 1 1 881500 1392700 8043.7 1793200 712380 599360 664870 1019400 1091800 1003000 1321100 820780 1301100 72056 1783200 681960 693660 690110 1014800 1100200 980270 1267300 2 2 1 2 2 2 2 2 2 2 2 178040000 125400000 52645000 16735 770 15369 84913;84914;84915;84916 102696;102697;102698;102699 102696 4 SCALAEDPQELR Unmodified 1387.6402 0.64017845 2152 Q8IX12;Q8IX12-2 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 39.691 39.765 2 0.018984 11596 20211116_3429_TMUAki_TMT10x_P_F2 64.82 33.531 788470 1407000 0 1577800 424310 480060 455580 1473800 1607500 1009100 1288200 734120 1313600 56970 1581200 407420 579090 496140 1434400 1573600 1004700 1252600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 788470 1407000 0 1577800 424310 480060 455580 1473800 1607500 1009100 1288200 734120 1313600 56970 1581200 407420 579090 496140 1434400 1573600 1004700 1252600 1 1 0 1 1 1 1 1 1 1 1 9771900 0 9771900 16736 2152 15370 84917;84918 102700;102701 102700 2 SCALAEDPQELRDGFQHPAR Unmodified 2296.0655 0.065477163 2152 Q8IX12;Q8IX12-2 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 0 0 0 1 By MS/MS 3.5 0.5 1 1 2 42.114 42.062 4 5.4933E-13 13947 20211116_3441_TMUAki_TMT10x_S_F3 134.32 121.44 3013000 5180900 80108 7347800 2259500 2178000 1953000 5091100 6268800 4652400 4284600 2805900 4842400 301890 7265600 2162900 2603200 2130600 5016200 6118200 4561900 4194600 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3013000 5180900 80108 7347800 2259500 2178000 1953000 5091100 6268800 4652400 4284600 2805900 4842400 301890 7265600 2162900 2603200 2130600 5016200 6118200 4561900 4194600 3 3 2 3 3 3 3 3 3 3 3 380040000 0 380040000 16737 2152 15371 84919;84920 102702;102703;102704 102703 3 SCDGNQELLNFLR Unmodified 1564.7304 0.73039044 3135 Q9UIG0;Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B yes no 0 0 0 0 By MS/MS By MS/MS 4.6 0.49 2 3 2 3 69.751 69.748 2;3 5.1553E-93 22942 20211116_3442_TMUAki_TMT10x_S_F4 360.18 336.09 28330000 45737000 302570 45406000 32101000 37752000 31804000 28454000 25167000 29151000 35050000 26379000 42676000 2588100 46231000 30785000 38722000 32070000 29420000 26244000 28441000 33506000 7 7 5 7 7 7 7 7 7 7 7 11815000 18592000 273890 18880000 11630000 20851000 13344000 11696000 10151000 11513000 14375000 11003000 17350000 1232200 19270000 11211000 20915000 13347000 12348000 10616000 11252000 13736000 3 3 3 3 3 3 3 3 3 3 3 16515000 27145000 28684 26527000 20472000 16901000 18460000 16758000 15016000 17638000 20675000 15377000 25327000 1355900 26961000 19574000 17808000 18724000 17072000 15628000 17189000 19769000 4 4 2 4 4 4 4 4 4 4 4 2741800000 1278400000 1463400000 16738 3135 15372 84921;84922;84923;84924;84925 102705;102706;102707;102708;102709;102710;102711;102712 102708 8 SCDPGLEDPCGLNR Unmodified 1588.661 0.66099025 2852 Q9HAV4 XPO5 Exportin-5 yes yes 0 0 0 0 By MS/MS By MS/MS 2.43 0.495 4 3 4 3 40.101 40.013 2;3 7.5268E-33 10352 20211116_3440_TMUAki_TMT10x_S_F2 223.96 199.74 4442900 7038400 78288 8812100 10683000 10851000 6491000 7622600 11111000 5540500 7475600 4137000 6574200 481700 8895000 10140000 10856000 6946300 7850800 10972000 5496900 7324000 12 12 5 12 12 12 12 12 12 12 12 3330600 5238300 78288 6325900 9764900 10133000 5668500 5852200 8821400 4283500 5460000 3101500 4892000 412830 6433600 9263100 9992200 6061600 6119200 8717000 4248100 5371100 9 9 5 9 9 9 9 9 9 9 9 1112300 1800100 0 2486200 918240 717550 822570 1770500 2289300 1257000 2015700 1035500 1682200 68871 2461400 876700 863750 884780 1731600 2255100 1248800 1952900 3 3 0 3 3 3 3 3 3 3 3 363690000 205820000 157870000 16739 2852 15373 84926;84927;84928;84929;84930;84931;84932 102713;102714;102715;102716;102717;102718;102719;102720;102721;102722;102723;102724 102722 12 SCENLAPFNTALK Unmodified 1463.7079 0.70786408 1603 Q13155;Q13155-2 AIMP2 Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 6.29 0.7 1 3 3 4 3 57.58 57.929 2;3 4.508E-36 19063 20211116_3446_TMUAki_TMT10x_S_F7 270.02 200.21 30996000 51643000 212150 57251000 40298000 38958000 32838000 37183000 33090000 32767000 40390000 28860000 48209000 2759100 57736000 38456000 40776000 33707000 37763000 33911000 32184000 38737000 6 6 2 6 6 6 6 6 6 6 6 12297000 19402000 138560 23777000 22818000 24556000 17067000 13335000 11634000 11702000 14999000 11451000 18120000 1289800 23959000 21742000 24716000 17445000 14075000 12193000 11496000 14365000 2 2 1 2 2 2 2 2 2 2 2 18698000 32241000 73589 33474000 17480000 14402000 15771000 23848000 21456000 21064000 25391000 17409000 30089000 1469300 33777000 16713000 16060000 16262000 23687000 21718000 20687000 24372000 4 4 1 4 4 4 4 4 4 4 4 3212900000 1683700000 1529200000 16740 1603 15374 84933;84934;84935;84936;84937;84938;84939 102725;102726;102727;102728;102729;102730;102731 102730 7 SCEVLFNPFDDIIPR Unmodified 1820.8767 0.87672033 2025 Q6UX04;Q6UX04-2 CWC27 Peptidyl-prolyl cis-trans isomerase CWC27 homolog yes no 0 0 0 0 By MS/MS By MS/MS 6 0.816 1 1 1 2 1 79.901 79.941 2 1.6432E-10 26919 20211116_3433_TMUAki_TMT10x_P_F5 124.86 106.11 1317700 1997900 0 1817800 1763600 1624900 1686800 1512900 1720200 1355300 1650700 1226400 1863600 57981 1864300 1685300 1664700 1716100 1539100 1746100 1330100 1594500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1317700 1997900 0 1817800 1763600 1624900 1686800 1512900 1720200 1355300 1650700 1226400 1863600 57981 1864300 1685300 1664700 1716100 1539100 1746100 1330100 1594500 1 1 0 1 1 1 1 1 1 1 1 294490000 0 294490000 16741 2025 15375 84940;84941;84942 102732;102733;102734 102732 3 SCGSSTPDEFPTDIPGTK Unmodified 1894.8255 0.82547262 993 P41091 EIF2S3 Eukaryotic translation initiation factor 2 subunit 3 yes yes 0 0 0 0 By MS/MS 4 0 1 1 54.463 54.621 2 1.0019E-46 16267 20211116_3431_TMUAki_TMT10x_P_F4 205.8 194.59 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16742 993 15376 84943 102735 102735 1 SCLENSSRPTSTIWVSMLAR Oxidation (M) 2310.1097 0.10965016 881 P30876 POLR2B DNA-directed RNA polymerase II subunit RPB2 yes yes 0 0 1 1 By MS/MS By MS/MS 2 0 2 1 1 53.454 53.237 3 2.0416E-06 15684 20211116_3440_TMUAki_TMT10x_S_F2 84.493 65.435 3063500 5570400 3914.4 5471700 4371800 6101000 4048100 4536000 4165900 4176500 4552800 2852300 5197400 252060 5598400 4182500 6141300 4126700 4680100 4246600 4093800 4379900 3 3 1 3 3 3 3 3 3 3 3 2064300 3408200 3914.4 3475500 3181700 4973800 3133600 2972300 2747600 2754400 2867000 1922000 3180400 176400 3563200 3048800 4929600 3169100 3116500 2816300 2699100 2762000 2 2 1 2 2 2 2 2 2 2 2 999180 2162200 0 1996200 1190200 1127200 914460 1563700 1418300 1422100 1685700 930260 2017000 75660 2035200 1133600 1211800 957590 1563600 1430300 1394700 1617900 1 1 0 1 1 1 1 1 1 1 1 310680000 209550000 101120000 16743 881 15377 84944;84945 102736;102737;102738 102738 1055 3 SCLGHLGYLGYPTLCEQDQAHAITVTR Unmodified 3059.4593 0.45932432 2156 Q8IXI1 RHOT2 Mitochondrial Rho GTPase 2 yes yes 0 0 0 0 By MS/MS 8 0 1 1 58.103 58.08 4 7.945E-25 16900 20211116_3447_TMUAki_TMT10x_S_F8 153.24 150.79 1907500 3452900 34156 3306800 2643400 2290800 2129300 3087800 2843900 2481600 2805300 1776300 3221400 194010 3368600 2523400 2414300 2208900 3081100 2860500 2448700 2707300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1907500 3452900 34156 3306800 2643400 2290800 2129300 3087800 2843900 2481600 2805300 1776300 3221400 194010 3368600 2523400 2414300 2208900 3081100 2860500 2448700 2707300 2 2 1 2 2 2 2 2 2 2 2 403850000 0 403850000 16744 2156 15378 84946 102739;102740 102740 2 SCLLHQFTEK Unmodified 1261.6125 0.61250714 1295 P61106 RAB14 Ras-related protein Rab-14 yes yes 0 0 0 0 By MS/MS 7 0 1 1 46.91 47.476 3 0.0024652 14341 20211116_3435_TMUAki_TMT10x_P_F7 73.781 55.47 1804300 2407300 0 3174900 3502900 3765400 2211600 1905300 1745600 1840200 2288600 1679800 2249100 153090 3193500 3324900 3757700 2296400 2029100 1815500 1799900 2190900 1 1 0 1 1 1 1 1 1 1 1 1804300 2407300 0 3174900 3502900 3765400 2211600 1905300 1745600 1840200 2288600 1679800 2249100 153090 3193500 3324900 3757700 2296400 2029100 1815500 1799900 2190900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 250960000 250960000 0 16745 1295 15379 84947 102741 102741 1 SCLLLQFTDKR Unmodified 1379.7231 0.72312022 1287;2297 P61019;Q8WUD1 RAB2A;RAB2B Ras-related protein Rab-2A;Ras-related protein Rab-2B no no 0 0 0 1 By MS/MS By MS/MS 2.5 0.957 1 2 2 1 4 2 59.388 59.215 3 2.0156E-14 19853 20211116_3430_TMUAki_TMT10x_P_F3 180.24 138.96 35306000 60121000 74192 58299000 57583000 68791000 43923000 47755000 33552000 41752000 49105000 32871000 56093000 2898600 59760000 54848000 68960000 44946000 49436000 35139000 41025000 46889000 8 8 3 8 8 8 8 8 8 8 8 21996000 36208000 74192 35649000 40142000 55120000 31112000 29421000 20391000 25634000 29772000 20480000 33784000 2003200 36698000 38259000 54374000 31699000 31097000 21547000 25191000 28429000 5 5 3 5 5 5 5 5 5 5 5 13310000 23913000 0 22650000 17441000 13670000 12811000 18334000 13161000 16118000 19334000 12391000 22309000 895330 23062000 16589000 14585000 13248000 18339000 13592000 15833000 18459000 3 3 0 3 3 3 3 3 3 3 3 3398600000 2039900000 1358700000 16746 1287;2297 15380 84948;84949;84950;84951;84952;84953 102742;102743;102744;102745;102746;102747;102748;102749 102745 8 SCLLPQLHPQPDSGPQGR Unmodified 1985.9741 0.97414296 2358 Q92696 RABGGTA Geranylgeranyl transferase type-2 subunit alpha yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 44.334 44.849 3 3.1998E-06 13720 20211116_3446_TMUAki_TMT10x_S_F7 94.71 88.273 1024600 1910400 48401 2026900 1757000 1786300 1404200 1742300 1756500 1422800 1851900 954390 1783100 140310 2056000 1678800 1833600 1453700 1764200 1774900 1402700 1783500 2 2 2 2 2 2 2 2 2 2 2 617940 1061500 44889 1145500 1337800 1445300 984980 1045500 1004400 838910 1133100 575700 990790 103150 1167100 1276600 1444900 1018200 1077000 1025500 827840 1089100 1 1 1 1 1 1 1 1 1 1 1 406680 848940 3511.6 881450 419250 340990 419250 696840 752050 583880 718750 378690 792270 37166 888850 402210 388710 435570 687160 749340 574900 694380 1 1 1 1 1 1 1 1 1 1 1 236650000 167250000 69393000 16747 2358 15381 84954;84955 102750;102751 102751 2 SCMLTGTPESVQSAK Unmodified 1594.7331 0.73309256 2408;2407 Q96AE4-2;Q96AE4 FUBP1 Far upstream element-binding protein 1 no no 0 0 0 0 By MS/MS 5 0 1 1 45.636 45.778 3 0.041584 12946 20211116_3433_TMUAki_TMT10x_P_F5 43.297 25.433 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16748 2408;2407 15382 84956 102752 102752 1 SCMLTGTPESVQSAK Oxidation (M) 1610.728 0.72800718 2408;2407 Q96AE4-2;Q96AE4 FUBP1 Far upstream element-binding protein 1 no no 0 0 1 0 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 38.612 38.709 3 0.00062664 9161 20211116_3444_TMUAki_TMT10x_S_F5 71.98 51.317 1476600 2282200 14764 3253200 1596300 1315400 1277500 1357200 1728600 1219600 2173500 1374900 2133200 129900 3221200 1523000 1460500 1326400 1373700 1754600 1196800 2082900 4 4 3 4 4 4 4 4 4 4 4 199710 312000 2358.6 405490 595410 460000 272040 232170 216030 177980 304690 185970 291480 24298 407870 562920 460130 291120 245930 225370 176060 291180 1 1 1 1 1 1 1 1 1 1 1 1276900 1970200 12405 2847700 1000900 855370 1005400 1125000 1512600 1041600 1868800 1189000 1841700 105610 2813300 960030 1000300 1035300 1127800 1529200 1020700 1791700 3 3 2 3 3 3 3 3 3 3 3 89847000 19751000 70096000 16749 2408;2407 15382 84957;84958;84959 102753;102754;102755;102756 102754 2739 4 SCNCLLLK Unmodified 1006.494 0.49397191 520 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.745 1 2 3 4 2 47.621 47.894 2;3 0.00044268 12689 20211116_3447_TMUAki_TMT10x_S_F8 150.4 107.33 21176000 33975000 75757 37002000 57643000 41045000 24620000 33781000 34218000 24220000 34639000 19717000 31713000 2217200 37595000 54438000 41401000 26997000 34427000 34406000 24049000 33402000 4 4 2 4 4 4 4 4 4 4 4 11755000 18633000 51635 19879000 49423000 32825000 16955000 19109000 19544000 13921000 18889000 10945000 17392000 1459000 20386000 46570000 32334000 18976000 19966000 19747000 13810000 18242000 2 2 1 2 2 2 2 2 2 2 2 9421000 15341000 24121 17123000 8220400 8219100 7665500 14672000 14673000 10300000 15749000 8771800 14322000 758230 17209000 7867800 9067200 8021400 14461000 14659000 10239000 15159000 2 2 1 2 2 2 2 2 2 2 2 3790600000 2320800000 1469800000 16750 520 15383 84960;84961;84962;84963;84964;84965 102757;102758;102759;102760;102761;102762 102762 6 SCQAMFQQINDSFR Unmodified 1730.7505 0.75047396 1995 Q6P2E9;Q6P2E9-2 EDC4 Enhancer of mRNA-decapping protein 4 yes no 0 0 0 0 By MS/MS 8 0 1 1 61.928 62.115 3 1.2784E-06 19023 20211116_3436_TMUAki_TMT10x_P_F8 93.51 83.345 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16751 1995 15384 84966 102763 102763 1 SCQAMFQQINDSFR Oxidation (M) 1746.7454 0.74538858 1995 Q6P2E9;Q6P2E9-2 EDC4 Enhancer of mRNA-decapping protein 4 yes no 0 0 1 0 By MS/MS 6 0 1 1 48.374 48.531 3 0.0021659 13186 20211116_3445_TMUAki_TMT10x_S_F6 62.69 49.489 1591400 2745800 29096 2892600 1636900 1558700 1409400 3077100 2935400 2535500 2679300 1482000 2562700 159690 2920600 1565600 1704300 1488800 3035800 2910400 2498700 2592600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1591400 2745800 29096 2892600 1636900 1558700 1409400 3077100 2935400 2535500 2679300 1482000 2562700 159690 2920600 1565600 1704300 1488800 3035800 2910400 2498700 2592600 1 1 1 1 1 1 1 1 1 1 1 64357000 0 64357000 16752 1995 15384 84967 102764 102764 2545 1 SCSGVEFSTSGSSNTDTGK Unmodified 1906.7851 0.78506437 1034 P45880;P45880-2;P45880-1 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 38.767 38.79 3 2.5402E-71 12491 20211116_3441_TMUAki_TMT10x_S_F3 291.06 280.28 1788500 2579100 42459 3488200 3093900 2051700 1874200 1395600 1560600 1298300 2043800 1665500 2410000 199290 3472900 2938000 2164000 1955200 1449100 1618500 1272000 1956700 4 4 3 4 4 4 4 4 4 4 4 1116200 1532200 40858 2082500 2511400 1593200 1138500 828860 980980 786380 1192200 1039600 1431800 150160 2078300 2376000 1636100 1221700 880030 1012400 769770 1143600 2 2 2 2 2 2 2 2 2 2 2 672300 1046900 1601.8 1405700 582500 458440 735750 566740 579580 511920 851610 625930 978220 49131 1394600 562040 527890 733460 569110 606110 502230 813100 2 2 1 2 2 2 2 2 2 2 2 339830000 198760000 141070000 16753 1034 15385 84968;84969;84970;84971;84972;84973 102765;102766;102767;102768 102767 4 SCSGVEFSTSGSSNTDTGKVTGTLETK Unmodified 2736.2396 0.23959752 1034 P45880;P45880-2;P45880-1 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 5.62 1 2 4 4 3 7 6 49.913 50.169 3;4 1.7533E-130 13558 20211116_3444_TMUAki_TMT10x_S_F5 320.72 297.07 83822000 159030000 464780 122750000 120080000 143210000 100420000 126100000 101590000 112440000 115330000 78048000 148250000 5729300 128090000 114650000 144240000 102920000 128660000 103780000 110380000 110830000 21 21 10 21 21 21 21 21 21 21 21 44809000 79816000 140840 62510000 65129000 99365000 60277000 66128000 52182000 57256000 60103000 41722000 74412000 2705900 65544000 62328000 98206000 61144000 68646000 53722000 56285000 57734000 12 12 6 12 12 12 12 12 12 12 12 39013000 79211000 323950 60239000 54952000 43843000 40142000 59971000 49406000 55187000 55222000 36326000 73841000 3023300 62549000 52326000 46038000 41779000 60018000 50063000 54095000 53091000 9 9 4 9 9 9 9 9 9 9 9 34188000000 17901000000 16286000000 16754 1034 15386 84974;84975;84976;84977;84978;84979;84980;84981;84982;84983;84984;84985;84986 102769;102770;102771;102772;102773;102774;102775;102776;102777;102778;102779;102780;102781;102782;102783;102784;102785;102786;102787;102788;102789 102783 21 SCSLVLEHQPDNIK Unmodified 1638.8036 0.80355538 1704 Q14318;Q14318-2;Q14318-3 FKBP8 Peptidyl-prolyl cis-trans isomerase FKBP8 yes no 0 0 0 0 By MS/MS 5 0 1 1 42.012 42.138 3 0.0015312 10384 20211116_3444_TMUAki_TMT10x_S_F5 63.709 33.271 2007500 3394100 61462 3710200 2061100 1837000 1951800 2754700 3086700 2030100 3490200 1869600 3168200 224460 3734700 1977200 2007600 2020700 2732800 3104800 2012600 3354400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2007500 3394100 61462 3710200 2061100 1837000 1951800 2754700 3086700 2030100 3490200 1869600 3168200 224460 3734700 1977200 2007600 2020700 2732800 3104800 2012600 3354400 1 1 1 1 1 1 1 1 1 1 1 77489000 0 77489000 16755 1704 15387 84987 102790 102790 1 SCSSSCAVHDLIFWR Unmodified 1823.8083 0.80832319 411 O95197-3;O95197-5;O95197-6 RTN3 Reticulon-3 yes no 0 0 0 0 By MS/MS 8 0 1 1 59.495 59.672 3 1.9814E-20 18030 20211116_3436_TMUAki_TMT10x_P_F8 154.6 141.18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16756 411 15388 84988 102791 102791 1 SCTVNIMFGTPQEHR Oxidation (M) 1791.8032 0.80323781 2865 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 yes yes 0 0 1 0 By MS/MS 6 0 1 1 39.275 39.438 3 9.8722E-07 9380 20211116_3445_TMUAki_TMT10x_S_F6 109.1 82.98 198820 354500 5723.5 424510 175320 144700 156660 251930 254950 211980 274480 185160 331050 21488 423940 167980 167080 162930 249540 255760 208670 264170 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 198820 354500 5723.5 424510 175320 144700 156660 251930 254950 211980 274480 185160 331050 21488 423940 167980 167080 162930 249540 255760 208670 264170 2 2 2 2 2 2 2 2 2 2 2 100720000 0 100720000 16757 2865 15389 84989 102792;102793 102793 2992 2 SCTVNIMFGTPQEHR Unmodified 1775.8083 0.80832319 2865 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 yes yes 0 0 0 0 By MS/MS 7 0 1 1 45.337 45.842 3 7.6313E-07 14148 20211116_3446_TMUAki_TMT10x_S_F7 112.03 97.774 3459700 5550500 47711 5777500 3264800 3055700 2369200 5689600 5338100 4639000 5301700 3221500 5180100 308450 5837300 3109500 3340100 2541900 5620400 5299400 4574000 5115500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3459700 5550500 47711 5777500 3264800 3055700 2369200 5689600 5338100 4639000 5301700 3221500 5180100 308450 5837300 3109500 3340100 2541900 5620400 5299400 4574000 5115500 2 2 1 2 2 2 2 2 2 2 2 340020000 0 340020000 16758 2865 15389 84990 102794;102795 102795 2 SCVIVLR Unmodified 845.47931 0.47930812 2556 Q96SI9;Q96SI9-2 STRBP Spermatid perinuclear RNA-binding protein yes no 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 38.962 39.307 2 0.0022242 9786 20211116_3436_TMUAki_TMT10x_P_F8 128.38 0 12347000 19156000 12216 21974000 17026000 14705000 12049000 9175900 6044000 8704600 13852000 11496000 17885000 1013700 22109000 16195000 15305000 12296000 9594400 6688500 8520800 13120000 8 8 1 8 8 8 8 8 8 8 8 5914000 8756700 12216 10150000 11050000 9891300 5729100 4553000 3094500 4141700 6477500 5506100 8176200 512510 10252000 10458000 9972600 6008000 4886300 3383500 4061900 6143900 3 3 1 3 3 3 3 3 3 3 3 6433400 10399000 0 11824000 5976300 4813700 6320200 4622900 2949500 4562900 7374000 5989900 9708900 501150 11857000 5737300 5332000 6288500 4708100 3305100 4458800 6976500 5 5 0 5 5 5 5 5 5 5 5 815490000 472540000 342950000 16759 2556 15390 84991;84992;84993;84994;84995 102796;102797;102798;102799;102800;102801;102802;102803 102798 8 SCYLSSLDLLLEHR Unmodified 1704.8505 0.85050558 2625 Q9BQ69 MACROD1 O-acetyl-ADP-ribose deacetylase MACROD1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.29 1.03 2 2 2 1 3 4 73.939 73.973 3 2.0396E-37 23700 20211116_3445_TMUAki_TMT10x_S_F6 240.92 218.11 16718000 27264000 515230 24400000 18921000 25464000 19483000 17980000 16948000 18222000 19629000 15570000 25430000 1888600 25110000 18187000 25707000 19654000 18666000 17448000 17787000 18852000 9 9 8 9 9 9 9 9 9 9 9 7844000 12173000 293740 10783000 7335100 15502000 8978300 8736000 8255100 8762200 8909200 7305700 11353000 916950 11169000 7092400 15349000 8998700 9224400 8453000 8556500 8574100 3 3 3 3 3 3 3 3 3 3 3 8873800 15092000 221490 13617000 11585000 9962300 10504000 9244200 8693100 9460200 10720000 8264000 14077000 971670 13941000 11094000 10358000 10655000 9441600 8994900 9230400 10278000 6 6 5 6 6 6 6 6 6 6 6 4864100000 2694100000 2169900000 16760 2625 15391 84996;84997;84998;84999;85000;85001;85002 102804;102805;102806;102807;102808;102809;102810;102811;102812 102808 9 SCYSLANQLELNPDFSRPNRK Unmodified 2508.218 0.21795506 933 P35573;P35573-2;P35573-3 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes no 0 0 0 2 By MS/MS By MS/MS 1 0 2 1 1 53.111 52.966 4 6.4983E-35 17304 20211116_3439_TMUAki_TMT10x_S_F1 191.95 175.47 9379000 14951000 96500 15595000 16205000 19044000 11403000 10895000 10417000 10111000 11997000 8733500 13953000 963110 15915000 15423000 19005000 11787000 11465000 10697000 9907400 11524000 3 3 3 3 3 3 3 3 3 3 3 8151600 12733000 72601 13186000 14987000 17890000 10170000 9142400 8917800 8496300 10258000 7590500 11883000 839210 13490000 14253000 17738000 10529000 9717500 9174600 8324600 9853800 2 2 2 2 2 2 2 2 2 2 2 1227400 2217500 23899 2408900 1218000 1154500 1233300 1752400 1499300 1614900 1738800 1143000 2069900 123900 2425200 1169700 1266900 1258500 1747400 1522100 1582800 1670000 1 1 1 1 1 1 1 1 1 1 1 984730000 665540000 319180000 16761 933 15392 85003;85004 102813;102814;102815 102815 3 SDAAVDTSSEITTK Acetyl (Protein N-term) 1465.6784 0.67839767 516 P06454;P06454-2 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 yes no 1 0 0 0 By MS/MS By MS/MS 2.58 1.19 2 5 2 2 1 6 6 47.838 47.671 2;3 3.0938E-43 13068 20211116_3428_TMUAki_TMT10x_P_F1 164.43 159.08 68857000 114210000 473480 134150000 204360000 114300000 79201000 94071000 124700000 72231000 120370000 64110000 106650000 5231600 135150000 192790000 117210000 88290000 96012000 124720000 71444000 116250000 19 19 6 19 19 19 19 19 19 19 19 31209000 49606000 410950 57993000 160680000 85006000 37916000 47380000 59632000 33193000 53280000 29057000 46319000 3807100 58974000 150970000 84087000 45551000 49647000 59489000 33002000 51594000 10 10 4 10 10 10 10 10 10 10 10 37649000 64605000 62526 76161000 43687000 29296000 41285000 46691000 65069000 39038000 67092000 35054000 60326000 1424500 76180000 41822000 33126000 42739000 46365000 65227000 38442000 64658000 9 9 2 9 9 9 9 9 9 9 9 14505000000 8807200000 5697900000 16762 516 15393 85005;85006;85007;85008;85009;85010;85011;85012;85013;85014;85015;85016 102816;102817;102818;102819;102820;102821;102822;102823;102824;102825;102826;102827;102828;102829;102830;102831;102832;102833;102834;102835;102836;102837;102838 102817 23 SDALETLGFLNHYQMK Unmodified 1865.8982 0.89818405 677 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 0 By MS/MS By MS/MS 5.89 2.47 1 1 2 2 3 4 5 72.869 72.879 3;4 1.1456E-35 25196 20211116_3446_TMUAki_TMT10x_S_F7 206.2 174.31 75754000 130510000 1787100 141990000 101990000 92212000 95844000 55325000 39321000 56305000 88402000 70547000 121820000 8245700 143300000 97742000 96181000 95790000 58142000 44217000 54950000 83759000 12 12 10 12 12 12 12 12 12 12 12 33396000 57049000 1023000 59881000 38920000 57187000 44585000 27007000 19961000 27147000 37926000 31102000 53244000 3799500 60849000 37523000 57746000 44166000 28986000 22022000 26508000 36030000 5 5 5 5 5 5 5 5 5 5 5 42358000 73458000 764160 82108000 63070000 35025000 51259000 28319000 19360000 29158000 50476000 39445000 68576000 4446200 82448000 60219000 38435000 51624000 29156000 22195000 28442000 47729000 7 7 5 7 7 7 7 7 7 7 7 15256000000 8356900000 6898900000 16763 677 15394 85017;85018;85019;85020;85021;85022;85023;85024;85025 102839;102840;102841;102842;102843;102844;102845;102846;102847;102848;102849;102850;102851;102852 102848 14 SDALETLGFLNHYQMK Oxidation (M) 1881.8931 0.89309867 677 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 1 0 By MS/MS By MS/MS 6.14 2.1 1 1 1 3 4 4 6 8 67.777 67.866 3;4 3.2657E-21 20733 20211116_3434_TMUAki_TMT10x_P_F6 162.88 144.51 152610000 267860000 1757600 240460000 188420000 256840000 192700000 227530000 221930000 233370000 219550000 142100000 249840000 14107000 247490000 180850000 259980000 196140000 233000000 224410000 227680000 211870000 30 30 22 30 30 30 30 30 30 30 30 47443000 81763000 363290 75414000 57661000 117500000 63084000 71446000 73379000 74435000 63166000 44175000 76270000 4263800 78013000 55437000 116070000 64024000 75055000 73838000 72574000 61250000 9 9 6 9 9 9 9 9 9 9 9 105170000 186100000 1394300 165050000 130760000 139330000 129610000 156090000 148550000 158930000 156390000 97929000 173570000 9843300 169480000 125410000 143910000 132120000 157940000 150570000 155100000 150620000 21 21 16 21 21 21 21 21 21 21 21 44520000000 23650000000 20870000000 16764 677 15394 85026;85027;85028;85029;85030;85031;85032;85033;85034;85035;85036;85037;85038;85039 102853;102854;102855;102856;102857;102858;102859;102860;102861;102862;102863;102864;102865;102866;102867;102868;102869;102870;102871;102872;102873;102874;102875;102876;102877;102878;102879;102880;102881;102882 102853 755 30 SDATADDLIDVVEGNR Unmodified 1688.7853 0.78532236 3234 Q9Y295 DRG1 Developmentally-regulated GTP-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 1.43 0.495 4 3 3 4 71.122 71.048 2;3 4.722E-80 22614 20211116_3428_TMUAki_TMT10x_P_F1 320.07 298.2 14454000 27704000 51880 20852000 20325000 29484000 21869000 26300000 23622000 23739000 23124000 13458000 25825000 1234100 21886000 19524000 29432000 22156000 26824000 23937000 23290000 22322000 4 4 2 4 4 4 4 4 4 4 4 7801200 14804000 44392 10694000 10697000 20393000 13960000 14729000 13834000 13549000 12740000 7263500 13799000 662800 11345000 10337000 20049000 13986000 15226000 14040000 13281000 12323000 2 2 1 2 2 2 2 2 2 2 2 6653300 12900000 7488.5 10158000 9627800 9091000 7908600 11571000 9788400 10190000 10384000 6194700 12026000 571300 10540000 9186900 9382900 8170200 11598000 9896900 10009000 9998700 2 2 1 2 2 2 2 2 2 2 2 3549100000 1950100000 1599100000 16765 3234 15395 85040;85041;85042;85043;85044;85045;85046 102883;102884;102885;102886;102887;102888;102889 102884 7 SDDDGFEIVPIEDPAK Unmodified 1745.7996 0.79957544 2164 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 0 0 0 0 By MS/MS By MS/MS 1.2 0.4 4 1 3 2 71.192 71.142 2;3 1.617E-21 22674 20211116_3428_TMUAki_TMT10x_P_F1 176.78 152.48 12310000 21836000 196830 22234000 16346000 22404000 16844000 14432000 13297000 15559000 16857000 11463000 20377000 1241600 22656000 15697000 22634000 16950000 15109000 13809000 15149000 16151000 5 5 4 5 5 5 5 5 5 5 5 8213500 14239000 63631 14235000 10618000 17339000 11717000 9504000 8636900 9987200 10731000 7647900 13286000 754970 14569000 10211000 17297000 11732000 10073000 8995700 9734100 10287000 3 3 2 3 3 3 3 3 3 3 3 4096100 7597200 133200 7998200 5728200 5065200 5127000 4928000 4660500 5571400 6126100 3814900 7090500 486590 8087300 5485500 5337900 5217500 5036600 4813700 5414800 5864300 2 2 2 2 2 2 2 2 2 2 2 1319200000 846530000 472690000 16766 2164 15396 85047;85048;85049;85050;85051 102890;102891;102892;102893;102894;102895;102896 102892 7 SDEAVKPFGLK Unmodified 1189.6343 0.63428844 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 1 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 48.343 48.485 3 9.4433E-06 12821 20211116_3434_TMUAki_TMT10x_P_F6 112.43 79.372 15218000 23414000 108100 29463000 32619000 23713000 16115000 17491000 19247000 14899000 21083000 14170000 21870000 1606100 29544000 30868000 24372000 17306000 18020000 19509000 14658000 20281000 3 3 3 3 3 3 3 3 3 3 3 9876500 14448000 89361 18394000 28561000 20006000 12093000 11476000 12902000 9574900 13459000 9196600 13497000 1163800 18510000 26977000 20090000 13153000 12042000 13110000 9429700 12966000 2 2 2 2 2 2 2 2 2 2 2 5341700 8965400 18739 11069000 4058300 3706300 4021500 6014900 6344500 5324500 7623800 4973800 8373600 442350 11034000 3891500 4281700 4153000 5978400 6398200 5228600 7314800 1 1 1 1 1 1 1 1 1 1 1 1250400000 943140000 307270000 16767 1092 15397 85052;85053;85054 102897;102898;102899 102898 3 SDEFSLADALPEHSPAK Acetyl (Protein N-term) 1854.8636 0.86357268 2238 Q8NDC0 MAPK1IP1L MAPK-interacting and spindle-stabilizing protein-like yes yes 1 0 0 0 By MS/MS By MS/MS 2.25 0.924 3 4 4 1 7 5 66.09 65.84 2;3 2.7176E-44 23598 20211116_3441_TMUAki_TMT10x_S_F3 152.14 135.11 31286000 55253000 591320 51377000 38266000 58896000 41077000 41026000 40631000 41016000 44262000 29134000 51542000 3132900 52799000 36790000 59134000 41505000 42614000 41484000 40059000 42586000 13 13 10 13 13 13 13 13 13 13 13 20415000 35217000 255340 32535000 24632000 45850000 27793000 26552000 25929000 26161000 28073000 19010000 32851000 1905100 33580000 23708000 45454000 27969000 27959000 26536000 25567000 27014000 8 8 6 8 8 8 8 8 8 8 8 10871000 20036000 335980 18841000 13634000 13046000 13284000 14474000 14702000 14855000 16190000 10124000 18691000 1227800 19219000 13083000 13680000 13536000 14655000 14947000 14492000 15572000 5 5 4 5 5 5 5 5 5 5 5 5576300000 3327200000 2249000000 16768 2238 15398 85055;85056;85057;85058;85059;85060;85061;85062;85063;85064;85065;85066 102900;102901;102902;102903;102904;102905;102906;102907;102908;102909;102910;102911;102912;102913 102913 14 SDEPARDDAAVETAEEAKEPAEADITELCR Unmodified 3287.4736 0.47357322 2015 Q6QNY1 BLOC1S2 Biogenesis of lysosome-related organelles complex 1 subunit 2 yes yes 0 0 0 2 By matching By MS/MS 1 0 2 1 1 58.714 58.565 4 7.8884E-10 19513 20211116_3439_TMUAki_TMT10x_S_F1 86.076 73.643 3501400 7553400 97636 5978200 5335500 5080400 3941500 5853800 4233900 5536400 5957600 3260900 7042200 406970 6196600 5086800 5248300 4080000 5903200 4355600 5420200 5693700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3501400 7553400 97636 5978200 5335500 5080400 3941500 5853800 4233900 5536400 5957600 3260900 7042200 406970 6196600 5086800 5248300 4080000 5903200 4355600 5420200 5693700 1 1 1 1 1 1 1 1 1 1 1 2829700000 1341100000 1488700000 16769 2015 15399 85067;85068 102914 102914 1 SDFDEFER Acetyl (Protein N-term) 1085.4302 0.4301689 812 P26368;P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 1 0 0 0 By MS/MS By MS/MS 1 0 4 2 2 54.747 54.599 1;2 1.1842E-05 17877 20211116_3439_TMUAki_TMT10x_S_F1 104.75 100.06 4409700 6353400 51758 6629800 6037100 7958300 5000800 6482500 6379300 5433000 6437800 4106200 5929400 430590 6763800 5765300 7992300 5169400 6634000 6431600 5349400 6208500 4 4 3 4 4 4 4 4 4 4 4 2898000 3988100 50019 4387400 4596300 6603900 3737800 4047700 3966800 3363700 4368400 2698700 3722900 310660 4480800 4388600 6533500 3843400 4223900 4039800 3313300 4201600 2 2 2 2 2 2 2 2 2 2 2 1511700 2365300 1739.1 2242500 1440800 1354400 1262900 2434800 2412400 2069400 2069400 1407500 2206600 119930 2283100 1376700 1458900 1325900 2410100 2391800 2036100 2006900 2 2 1 2 2 2 2 2 2 2 2 1037000000 581790000 455260000 16770 812 15400 85069;85070;85071;85072 102915;102916;102917;102918 102917 4 SDGALLLGASSLSGR Unmodified 1402.7416 0.74160705 2627 Q9BQA1;Q9BQA1-2 WDR77 Methylosome protein 50 yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 59.202 59.471 2 7.4015E-30 19708 20211116_3446_TMUAki_TMT10x_S_F7 210.93 161.18 11022000 19707000 275740 20384000 12055000 11117000 11456000 12678000 11309000 12240000 15031000 10264000 18391000 1185200 20608000 11560000 11932000 11647000 12798000 11643000 11972000 14384000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11022000 19707000 275740 20384000 12055000 11117000 11456000 12678000 11309000 12240000 15031000 10264000 18391000 1185200 20608000 11560000 11932000 11647000 12798000 11643000 11972000 14384000 3 3 3 3 3 3 3 3 3 3 3 1058200000 0 1058200000 16771 2627 15401 85073;85074 102919;102920;102921 102921 3 SDGEAKPEPSPSPR Unmodified 1452.6845 0.68448611 811 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 0 0 0 1 By MS/MS 3 0 1 1 29.007 28.734 3 0.0023814 8582 20211116_3441_TMUAki_TMT10x_S_F3 63.185 45.112 52442 98152 0 97962 65031 46950 67360 34616 44718 35069 66539 48828 91585 0 99188 62414 50699 67503 35831 47258 34232 63512 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 52442 98152 0 97962 65031 46950 67360 34616 44718 35069 66539 48828 91585 0 99188 62414 50699 67503 35831 47258 34232 63512 1 1 0 1 1 1 1 1 1 1 1 1931200 0 1931200 16772 811 15402 85075 102922 102922 1 SDGGYTYDTSDLAAIK Unmodified 1675.7577 0.75771063 1218 P54136;P54136-2 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 60.24 60.246 3 3.0184E-08 19077 20211116_3442_TMUAki_TMT10x_S_F4 119.32 105.41 10819000 17643000 385460 22479000 13067000 14523000 10852000 15398000 16140000 14725000 16770000 10076000 16481000 1287700 22472000 12497000 15305000 11287000 15591000 16210000 14409000 16158000 3 3 3 3 3 3 3 3 3 3 3 3524800 5463400 116730 6388500 6625800 8667200 5192400 4952200 5109000 4708300 4856200 3282800 5101400 444450 6486100 6324200 8605500 5339300 5215200 5192200 4608400 4692400 1 1 1 1 1 1 1 1 1 1 1 7294000 12180000 268740 16090000 6440900 5855800 5659800 10446000 11031000 10016000 11914000 6793500 11380000 843230 15986000 6172400 6700000 5948100 10376000 11018000 9800100 11465000 2 2 2 2 2 2 2 2 2 2 2 958610000 405280000 553330000 16773 1218 15403 85076;85077 102923;102924;102925 102924 3 SDGIYIINLK Unmodified 1134.6285 0.62847478 565 P08865 RPSA 40S ribosomal protein SA yes yes 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 67.355 67.638 2 4.8328E-11 23047 20211116_3446_TMUAki_TMT10x_S_F7 209.58 151.42 33415000 56890000 466390 63906000 33420000 42798000 34440000 34102000 31547000 35359000 43132000 31115000 53110000 3095000 64384000 32091000 44707000 34791000 35149000 32632000 34482000 41249000 4 4 2 4 4 4 4 4 4 4 4 12660000 20536000 115550 21659000 18634000 25315000 15610000 12565000 11684000 13297000 15890000 11788000 19166000 1230600 22071000 17797000 25277000 15871000 13440000 12207000 12956000 15198000 2 2 1 2 2 2 2 2 2 2 2 20755000 36354000 350830 42247000 14786000 17484000 18830000 21537000 19863000 22062000 27242000 19326000 33944000 1864400 42312000 14294000 19430000 18920000 21709000 20424000 21525000 26051000 2 2 1 2 2 2 2 2 2 2 2 2613200000 1777800000 835450000 16774 565 15404 85078;85079;85080 102926;102927;102928;102929 102928 4 SDGIYIINLKR Unmodified 1290.7296 0.7295858 565 P08865 RPSA 40S ribosomal protein SA yes yes 0 0 0 1 By MS/MS By MS/MS 2.8 2.64 2 2 1 3 2 55.478 55.353 3 4.5104E-11 17739 20211116_3429_TMUAki_TMT10x_P_F2 162.26 135.66 20766000 33752000 287460 37288000 33885000 43803000 21733000 30112000 27434000 26298000 28734000 19337000 31507000 2090000 37887000 32197000 43914000 22856000 31192000 27706000 25841000 27678000 6 6 4 6 6 6 6 6 6 6 6 13908000 22338000 219190 24516000 28122000 38043000 16376000 20643000 18413000 17770000 19039000 12951000 20852000 1497800 25059000 26679000 37530000 17288000 21780000 18665000 17473000 18346000 4 4 3 4 4 4 4 4 4 4 4 6858400 11414000 68268 12772000 5763200 5759800 5356500 9469400 9020700 8527900 9695200 6386100 10655000 592200 12828000 5518300 6383600 5568000 9412400 9040600 8367600 9331800 2 2 1 2 2 2 2 2 2 2 2 2805800000 1858100000 947670000 16775 565 15405 85081;85082;85083;85084;85085 102930;102931;102932;102933;102934;102935 102931 6 SDGKIDVSIEAASGGK Unmodified 1532.7682 0.76821574 582 P09622;P09622-3;P09622-2 DLD Dihydrolipoyl dehydrogenase, mitochondrial yes no 0 0 0 1 By MS/MS 5.5 0.5 1 1 2 48.356 48.521 3 5.8469E-15 12924 20211116_3444_TMUAki_TMT10x_S_F5 145.48 121.65 8673700 13563000 59747 14538000 9681800 8012800 8498800 7769000 6932900 7957800 10691000 8076300 12659000 766970 14664000 9255800 8559900 8634000 7917000 7254900 7764300 10197000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8673700 13563000 59747 14538000 9681800 8012800 8498800 7769000 6932900 7957800 10691000 8076300 12659000 766970 14664000 9255800 8559900 8634000 7917000 7254900 7764300 10197000 3 3 2 3 3 3 3 3 3 3 3 295860000 0 295860000 16776 582 15406 85086;85087 102936;102937;102938 102936 3 SDIDEIVLVGGSTR Unmodified 1459.7518 0.75183739 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 By MS/MS By MS/MS 2.8 0.748 4 4 2 5 5 62.64 62.347 2;3 2.2294E-43 22145 20211116_3441_TMUAki_TMT10x_S_F3 270.67 219.33 24009000 39671000 445140 41479000 28645000 33492000 27034000 32004000 32615000 31013000 33181000 22357000 37024000 1901500 42069000 27444000 34579000 27679000 32585000 32956000 30329000 31991000 9 9 3 9 9 9 9 9 9 9 9 8377200 13523000 229810 14168000 11348000 17516000 10457000 9974700 10317000 9923200 11064000 7801000 12620000 871810 14458000 10868000 17468000 10649000 10521000 10529000 9693600 10650000 4 4 2 4 4 4 4 4 4 4 4 15632000 26149000 215330 27311000 17297000 15976000 16577000 22029000 22298000 21089000 22117000 14556000 24404000 1029700 27610000 16576000 17111000 17029000 22064000 22427000 20636000 21341000 5 5 1 5 5 5 5 5 5 5 5 3330500000 1636300000 1694200000 16777 614 15407 85088;85089;85090;85091;85092;85093;85094;85095;85096;85097 102939;102940;102941;102942;102943;102944;102945;102946;102947;102948 102946 10 SDIGEVILVGGMTR Oxidation (M) 1461.7497 0.7497289 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 4 0.707 2 4 2 5 3 60.492 60.495 2;3 1.0782E-05 18632 20211116_3431_TMUAki_TMT10x_P_F4 104.94 88.719 30560000 47168000 198360 51797000 39332000 52676000 32823000 35149000 36858000 34326000 39267000 28456000 44030000 2405200 52528000 37558000 53215000 33759000 36597000 37406000 33559000 37805000 10 10 5 10 10 10 10 10 10 10 10 20847000 31489000 165410 33562000 30343000 43628000 23794000 24189000 24725000 23725000 26667000 19411000 29390000 1968900 34243000 28936000 43387000 24506000 25561000 25181000 23190000 25665000 7 7 3 7 7 7 7 7 7 7 7 9713300 15679000 32953 18236000 8989000 9048800 9029600 10960000 12134000 10602000 12600000 9044300 14640000 436270 18285000 8622100 9828000 9253100 11036000 12225000 10369000 12140000 3 3 2 3 3 3 3 3 3 3 3 5365000000 3269900000 2095100000 16778 972 15408 85098;85099;85100;85101;85102;85103;85104;85105 102949;102950;102951;102952;102953;102954;102955;102956;102957;102958;102959 102953 1232 11 SDIGEVILVGGMTR Unmodified 1445.7548 0.75481428 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5.12 0.781 2 3 3 4 4 69.607 69.583 2;3 3.625E-37 21549 20211116_3444_TMUAki_TMT10x_S_F5 246.56 209.8 47911000 74933000 360820 86430000 45858000 45276000 53034000 23251000 19138000 27533000 48393000 44611000 69963000 4066500 86745000 44159000 48168000 52370000 24880000 21991000 26714000 45777000 9 9 6 9 9 9 9 9 9 9 9 18125000 26942000 90608 30833000 18872000 23607000 20967000 9793800 8516600 11039000 17994000 16876000 25154000 1411900 31072000 18141000 24184000 20773000 10692000 9545300 10730000 17065000 4 4 2 4 4 4 4 4 4 4 4 29786000 47991000 270220 55597000 26987000 21670000 32066000 13457000 10621000 16494000 30398000 27736000 44809000 2654600 55673000 26018000 23984000 31597000 14188000 12446000 15984000 28712000 5 5 4 5 5 5 5 5 5 5 5 4305800000 2434400000 1871400000 16779 972 15408 85106;85107;85108;85109;85110;85111;85112;85113 102960;102961;102962;102963;102964;102965;102966;102967;102968;102969;102970 102966 11 SDISPLTPR Unmodified 984.52401 0.52400971 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.707 1 2 1 3 1 37.862 37.916 2 0.00083596 9886 20211116_3431_TMUAki_TMT10x_P_F4 110.55 81.404 4676600 7649400 48642 8453000 12507000 11547000 6628300 6549900 7590300 6144400 7103200 4354700 7140700 542720 8613000 11847000 11460000 7060500 6899600 7662500 6017600 6867300 5 5 5 5 5 5 5 5 5 5 5 4336200 7014400 41014 7736900 12072000 11263000 6242100 6184100 7185600 5808700 6609900 4037800 6547900 506070 7894600 11431000 11142000 6665700 6532600 7248400 5688600 6394200 4 4 4 4 4 4 4 4 4 4 4 340340 634980 7628.5 716150 435130 284450 386140 365840 404730 335670 493330 316950 592810 36654 718410 416450 318230 394820 366950 414070 329070 473160 1 1 1 1 1 1 1 1 1 1 1 315640000 231720000 83916000 16780 1057 15409 85114;85115;85116;85117 102971;102972;102973;102974;102975 102973 5 SDKPDLSEVEKFDR Acetyl (Protein N-term) 1705.8159 0.81589421 594 P0CG34;P0CG35 TMSB15A;TMSB15B Thymosin beta-15A;Thymosin beta-15B yes no 1 0 0 2 By MS/MS By MS/MS 3.33 1.11 2 1 2 1 3 3 55.091 54.988 3 5.3569E-20 18083 20211116_3430_TMUAki_TMT10x_P_F3 98.253 73.212 31203000 62097000 442260 45055000 58393000 101260000 49266000 126500000 95825000 85413000 70537000 29054000 57879000 3148800 48008000 55773000 100260000 51891000 126120000 94551000 85111000 68828000 10 10 9 10 10 10 10 10 10 10 10 15890000 30770000 186730 22057000 36572000 75827000 35502000 63971000 49627000 43572000 34790000 14797000 28679000 1781100 23921000 35051000 73664000 36505000 65029000 49343000 43396000 34020000 5 5 5 5 5 5 5 5 5 5 5 15313000 31327000 255530 22998000 21822000 25432000 13764000 62533000 46198000 41840000 35748000 14258000 29200000 1367700 24086000 20722000 26592000 15386000 61087000 45208000 41716000 34808000 5 5 4 5 5 5 5 5 5 5 5 5295800000 3335300000 1960500000 16781 594 15411 85118;85119;85120;85121;85122;85123 102976;102977;102978;102979;102980;102981;102982;102983;102984;102985;102986 102978 11 SDKPDMAEIEK Acetyl (Protein N-term);Oxidation (M) 1319.5915 0.59149692 1356 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide no no 1 0 1 1 By matching By matching 2.5 0.5 1 1 1 1 38.432 38.172 2 1 NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 58489000 46769000 11721000 16782 1356 15412 85124;85125 1815 0 SDKPDMAEIEKFDK Acetyl (Protein N-term) 1693.7869 0.78690227 1356 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide yes yes 1 0 0 2 By MS/MS By MS/MS 3.7 1.27 2 3 2 2 1 6 4 58.469 58.39 3;4 2.8287E-12 19444 20211116_3430_TMUAki_TMT10x_P_F3 71.692 50.459 182660000 315460000 1840700 379070000 215690000 194100000 177590000 111010000 87161000 120370000 211450000 170090000 294600000 17048000 379450000 205950000 207280000 179330000 117340000 97038000 117180000 200130000 13 13 11 13 13 13 13 13 13 13 13 74112000 117790000 836200 146220000 135560000 128650000 117970000 44090000 35332000 49131000 81818000 69009000 110010000 7510600 146890000 129570000 130250000 118020000 49246000 41210000 47776000 77488000 6 6 4 6 6 6 6 6 6 6 6 108550000 197680000 1004500 232850000 80135000 65447000 59626000 66917000 51829000 71244000 129630000 101080000 184580000 9537800 232560000 76382000 77032000 61312000 68092000 55829000 69402000 122640000 7 7 7 7 7 7 7 7 7 7 7 19871000000 11874000000 7997000000 16783 1356 15413 85126;85127;85128;85129;85130;85131;85132;85133;85134;85135 102987;102988;102989;102990;102991;102992;102993;102994;102995;102996;102997;102998;102999;103000 102988 14 SDKPDMAEIEKFDK Acetyl (Protein N-term);Oxidation (M) 1709.7818 0.78181689 1356 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide yes yes 1 0 1 2 By MS/MS By MS/MS 3.2 0.748 1 2 2 2 3 49.85 49.795 3;4 1.914E-06 14687 20211116_3442_TMUAki_TMT10x_S_F4 73.887 61.26 24299000 36705000 91639 50868000 49779000 46259000 26811000 45317000 54664000 34996000 41261000 22624000 34302000 2264400 50825000 47146000 47389000 29259000 45814000 53916000 34604000 40218000 8 8 4 8 8 8 8 8 8 8 8 12659000 17788000 0 26960000 40696000 36887000 19477000 19865000 24152000 15545000 19651000 11785000 16633000 1265500 27004000 38476000 36583000 21011000 20927000 24207000 15360000 19096000 3 3 0 3 3 3 3 3 3 3 3 11640000 18916000 91639 23908000 9083300 9372000 7333500 25452000 30511000 19451000 21611000 10839000 17670000 998850 23820000 8670100 10806000 8247700 24886000 29710000 19244000 21123000 5 5 4 5 5 5 5 5 5 5 5 2656200000 1501400000 1154800000 16784 1356 15413 85136;85137;85138;85139;85140 103001;103002;103003;103004;103005;103006;103007;103008 103008 1815 8 SDKSELKAELER Acetyl (Protein N-term) 1445.7362 0.73618733 1629 Q13409;Q13409-3;Q13409-2;Q13409-6;Q13409-7;Q13409-5 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 no no 1 0 0 2 By MS/MS 2 0 1 1 46.611 46.324 3 1 NaN NaN 2689700 4490600 0 4308800 6348600 8329200 4644200 4685800 4480200 4179500 4505600 2504300 4189500 261090 4468600 6043600 8155400 4794900 4932900 4565900 4102700 4345600 1 1 0 1 1 1 1 1 1 1 1 2689700 4490600 0 4308800 6348600 8329200 4644200 4685800 4480200 4179500 4505600 2504300 4189500 261090 4468600 6043600 8155400 4794900 4932900 4565900 4102700 4345600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 135420000 135420000 0 16785 1629 15414 85141 0 SDKSPDLAPTPAPQSTPR Unmodified 1863.9327 0.9326553 2723 Q9BY44;Q9BY44-3;Q9BY44-4;Q9BY44-2 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes no 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 34.848 34.917 3 2.32E-23 8776 20211116_3433_TMUAki_TMT10x_P_F5 161.22 145.1 517040 886390 0 1098400 2278200 1558300 908110 1021100 1405400 623390 1109400 481330 827890 56802 1112500 2149300 1547100 1008200 1053400 1397500 625220 1079300 2 2 0 2 2 2 2 2 2 2 2 366100 591060 0 737380 2102500 1402700 727720 719600 978770 430440 776670 340810 552070 46418 751870 1980800 1372600 817820 757450 977570 432300 755480 1 1 0 1 1 1 1 1 1 1 1 150940 295330 0 361050 175710 155610 180390 301490 426610 192950 332690 140520 275820 10384 360610 168430 174480 190360 295920 419900 192920 323850 1 1 0 1 1 1 1 1 1 1 1 106420000 63746000 42674000 16786 2723 15415 85142;85143 103009;103010 103009 2 SDKTEEIAEEEETVFPK Unmodified 1979.9211 0.92114714 2918 Q9NR30 DDX21 Nucleolar RNA helicase 2 yes yes 0 0 0 1 By MS/MS By MS/MS 2.11 1.1 4 1 3 1 3 6 61.338 61.136 3;4 3.6597E-16 18482 20211116_3428_TMUAki_TMT10x_P_F1 158.45 142.86 66631000 109060000 795760 125770000 67558000 83035000 64376000 63588000 61653000 63374000 80430000 62043000 101820000 5864200 126490000 64719000 86790000 65382000 65627000 63507000 61903000 77007000 12 12 9 12 12 12 12 12 12 12 12 26216000 42299000 526890 48844000 36354000 52230000 32733000 25408000 25195000 25888000 32776000 24413000 39494000 2758800 49417000 34796000 52397000 33159000 27201000 26230000 25264000 31383000 6 6 5 6 6 6 6 6 6 6 6 40415000 66758000 268870 76929000 31204000 30805000 31643000 38180000 36459000 37486000 47654000 37630000 62330000 3105400 77072000 29924000 34392000 32223000 38425000 37277000 36639000 45623000 6 6 4 6 6 6 6 6 6 6 6 8993100000 4648700000 4344400000 16787 2918 15416 85144;85145;85146;85147;85148;85149;85150;85151;85152 103011;103012;103013;103014;103015;103016;103017;103018;103019;103020;103021;103022;103023;103024 103011 14 SDKVPDNKNTHTLLLAGVFR Unmodified 2224.1964 0.19641498 3339 Q9Y678 COPG1 Coatomer subunit gamma-1 yes yes 0 0 0 2 By MS/MS 2 0 1 1 51.857 51.69 5 8.9114E-05 15026 20211116_3440_TMUAki_TMT10x_S_F2 74.047 54.228 1550100 2649400 56446 2585300 1584800 1654500 1374200 2502200 2541900 2500300 2201600 1443700 2471900 181610 2628000 1517700 1762000 1441000 2501200 2522800 2442000 2134300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1550100 2649400 56446 2585300 1584800 1654500 1374200 2502200 2541900 2500300 2201600 1443700 2471900 181610 2628000 1517700 1762000 1441000 2501200 2522800 2442000 2134300 1 1 1 1 1 1 1 1 1 1 1 129610000 0 129610000 16788 3339 15417 85153 103025 103025 1 SDLHEVKQEYSISPTDFCRK Unmodified 2438.1536 0.15362347 2157 Q8IXI2;Q8IXI2-3;Q8IXI2-4;Q8IXI2-5;Q8IXI2-2;Q8IXI2-7 RHOT1 Mitochondrial Rho GTPase 1 yes no 0 0 0 2 By MS/MS 7 0 1 1 49.677 50.162 5 0.0098883 15899 20211116_3446_TMUAki_TMT10x_S_F7 50.87 35.942 3444600 5431300 13305 6373500 3330500 2178700 2707800 2916700 2465300 2762000 3977900 3207300 5071500 296380 6372700 3178600 2494900 2771700 2923600 2572300 2703900 3790500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3444600 5431300 13305 6373500 3330500 2178700 2707800 2916700 2465300 2762000 3977900 3207300 5071500 296380 6372700 3178600 2494900 2771700 2923600 2572300 2703900 3790500 1 1 1 1 1 1 1 1 1 1 1 573630000 0 573630000 16789 2157 15418 85154 103026 103026 1 SDLIEVATR Unmodified 1002.5346 0.53457439 3135 Q9UIG0;Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 47.798 47.612 2 0.0019669 16160 20211116_3441_TMUAki_TMT10x_S_F3 91.265 70.318 6425400 10031000 27604 11027000 8250400 7774200 5872100 6686700 6992900 5731000 7672200 5982900 9363500 583990 11130000 7852800 8096000 6115400 6824900 7089100 5636500 7380000 2 2 2 2 2 2 2 2 2 2 2 3422100 5086700 12304 5571400 5346800 5408300 3140000 3158500 3452600 2832300 3756400 3186400 4748300 322140 5647000 5072100 5469100 3310100 3315100 3509600 2779600 3614300 1 1 1 1 1 1 1 1 1 1 1 3003300 4944000 15301 5455500 2903600 2365900 2732100 3528300 3540300 2898700 3915800 2796400 4615200 261850 5483200 2780700 2626900 2805300 3509800 3579600 2856900 3765800 1 1 1 1 1 1 1 1 1 1 1 183860000 116450000 67411000 16790 3135 15419 85155;85156 103027;103028 103028 2 SDLLLEGFNNYR Unmodified 1439.7045 0.70449327 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS By MS/MS 6 0.707 2 4 2 4 4 70.063 70.152 2;3 3.121E-88 22085 20211116_3445_TMUAki_TMT10x_S_F6 356.99 316.27 36660000 61874000 895640 61631000 35276000 54122000 46704000 35348000 35429000 40070000 46620000 34138000 57734000 3453900 62779000 34140000 55178000 46428000 37029000 36933000 38940000 44627000 9 9 4 9 9 9 9 9 9 9 9 14865000 23491000 704160 24955000 15002000 26096000 16955000 13903000 14084000 15980000 17997000 13845000 21925000 1730600 25372000 14466000 26241000 17007000 14813000 14593000 15522000 17240000 4 4 1 4 4 4 4 4 4 4 4 21795000 38383000 191470 36676000 20273000 28026000 29749000 21446000 21345000 24090000 28623000 20292000 35809000 1723300 37407000 19673000 28937000 29420000 22216000 22341000 23418000 27386000 5 5 3 5 5 5 5 5 5 5 5 3517900000 1967900000 1550000000 16791 935 15420 85157;85158;85159;85160;85161;85162;85163;85164 103029;103030;103031;103032;103033;103034;103035;103036;103037;103038 103036 10 SDLLLSGR Unmodified 859.47633 0.47633123 128 O14744;O14744-5;O14744-2;O14744-3;O14744-4 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed yes no 0 0 0 0 By MS/MS 5 0 1 1 44.196 44.339 2 0.0071161 11261 20211116_3444_TMUAki_TMT10x_S_F5 90.37 58.064 1619400 2479900 19897 2749400 1333800 1494400 1421300 2007500 2169900 1871900 2347000 1507900 2315000 148800 2767100 1282400 1611300 1460300 2011100 2181100 1833800 2258600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1619400 2479900 19897 2749400 1333800 1494400 1421300 2007500 2169900 1871900 2347000 1507900 2315000 148800 2767100 1282400 1611300 1460300 2011100 2181100 1833800 2258600 1 1 1 1 1 1 1 1 1 1 1 165310000 0 165310000 16792 128 15421 85165 103039 103039 1 SDLYSSGR Unmodified 883.40356 0.40356022 969 P38159;P38159-2 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed yes no 0 0 0 0 By MS/MS 3 0 1 1 31.099 30.846 2 0.10322 9410 20211116_3441_TMUAki_TMT10x_S_F3 47.594 35.954 242540 426730 3808.9 377410 240790 234080 282910 247060 263410 232360 324260 225860 398000 23634 386360 232170 247600 284170 250100 270990 227540 310910 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 242540 426730 3808.9 377410 240790 234080 282910 247060 263410 232360 324260 225860 398000 23634 386360 232170 247600 284170 250100 270990 227540 310910 1 1 1 1 1 1 1 1 1 1 1 16940000 0 16940000 16793 969 15422 85166 103040 103040 1 SDMYILNESLTDPAIVK Unmodified 1907.955 0.95503023 1486 Q01780;Q01780-2 EXOSC10 Exosome component 10 yes no 0 0 0 0 By MS/MS 3 0 1 1 73.768 73.604 3 0.1105 25663 20211116_3430_TMUAki_TMT10x_P_F3 24.793 6.4291 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16794 1486 15423 85167 103041 103041 1 SDNFVICSVTGAGPREER Unmodified 1992.9323 0.93233773 2249 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 0 1 By MS/MS 4 0 1 1 46.673 46.862 3 0.00011583 13518 20211116_3442_TMUAki_TMT10x_S_F4 76.704 56.323 1009300 1551200 28959 2115900 901360 904230 822250 1587700 1353200 1408000 1623700 939930 1449600 109150 2100600 864030 1011300 854620 1574400 1363000 1382500 1558000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1009300 1551200 28959 2115900 901360 904230 822250 1587700 1353200 1408000 1623700 939930 1449600 109150 2100600 864030 1011300 854620 1574400 1363000 1382500 1558000 1 1 1 1 1 1 1 1 1 1 1 90252000 0 90252000 16795 2249 15424 85168 103042 103042 1 SDNGELEDKPPAPPVR Acetyl (Protein N-term) 1761.8533 0.85334235 1606 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes yes 1 0 0 1 By MS/MS By MS/MS 1.8 0.748 2 2 1 4 1 42.196 42.112 2;3 3.7437E-29 10999 20211116_3440_TMUAki_TMT10x_S_F2 89.805 82.434 1694100 2576700 20588 3672400 4608800 4463900 2543000 2813400 3066300 2164000 2712300 1577400 2408500 188450 3680900 4367700 4461700 2703700 2924300 3084000 2140200 2627400 4 4 2 4 4 4 4 4 4 4 4 1469100 2186600 20588 3126900 4467600 4330000 2419900 2455600 2626000 1872200 2300100 1368000 2043900 172220 3141500 4232800 4294800 2568100 2573800 2650900 1852600 2228900 3 3 2 3 3 3 3 3 3 3 3 224970 390100 0 545490 141270 133920 123080 357820 440330 291770 412190 209460 364580 16238 539360 134910 166850 135610 350530 433080 287680 398490 1 1 0 1 1 1 1 1 1 1 1 220590000 194140000 26446000 16796 1606 15425 85169;85170;85171;85172;85173 103043;103044;103045;103046;103047;103048 103048 6 SDNVVEGNCADELLQNSHR Unmodified 2155.9553 0.95525801 238 O43716 GATC Glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial yes yes 0 0 0 0 By MS/MS 3 0 1 1 43.089 43.136 3 4.906E-41 13178 20211116_3430_TMUAki_TMT10x_P_F3 190.96 185.05 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16797 238 15426 85174 103049 103049 1 SDPAVNAQLDGIISDFEALK Acetyl (Protein N-term) 2144.0637 0.063729054 3118 Q9UHD8-5 SEPT9 Septin-9 yes yes 1 0 0 0 By MS/MS By MS/MS 2.11 1.2 4 2 1 2 4 5 84.852 84.848 2;3 1.4819E-71 28240 20211116_3428_TMUAki_TMT10x_P_F1 190.1 177.09 12416000 19887000 0 19254000 12431000 17145000 13341000 7342700 9743400 9885200 13181000 11560000 18554000 680680 19655000 11938000 17376000 13373000 8036400 10192000 9549700 12609000 9 9 0 9 9 9 9 9 9 9 9 8991400 14101000 0 14143000 8087500 13243000 8799800 4582600 6337800 6615900 9160800 8371500 13158000 402810 14412000 7769600 13352000 8812600 5157300 6655500 6377600 8749700 5 5 0 5 5 5 5 5 5 5 5 3424600 5785900 0 5110300 4343700 3902200 4541100 2760000 3405600 3269300 4020600 3188500 5396400 277870 5243000 4168700 4024100 4560800 2879100 3536100 3172000 3859500 4 4 0 4 4 4 4 4 4 4 4 1421400000 1051400000 369930000 16798 3118 15427 85175;85176;85177;85178;85179;85180;85181;85182;85183 103050;103051;103052;103053;103054;103055;103056;103057;103058;103059 103050 10 SDPAVNAQLDGIISDFEALKR Acetyl (Protein N-term) 2300.1648 0.16484008 3118 Q9UHD8-5 SEPT9 Septin-9 yes yes 1 0 0 1 By MS/MS By MS/MS 2.83 1.34 1 2 1 1 1 4 2 82.077 82.068 3 4.2209E-13 27326 20211116_3440_TMUAki_TMT10x_S_F2 99.86 85.956 1905700 3377900 48714 3343300 2530600 3943300 2687600 3272000 2614100 2730300 2991300 1774700 3151800 158240 3422200 2433300 3965100 2715600 3344400 2676000 2688900 2873900 3 3 2 3 3 3 3 3 3 3 3 1214900 2081700 21397 2081100 1490400 2801900 1588800 1955900 1648600 1687300 1836500 1131400 1942400 70617 2133900 1432800 2790900 1608300 2023300 1681200 1659000 1765800 2 2 1 2 2 2 2 2 2 2 2 690760 1296200 27318 1262200 1040200 1141400 1098800 1316100 965490 1043000 1154800 643360 1209400 87622 1288300 1000500 1174200 1107400 1321200 994770 1029900 1108200 1 1 1 1 1 1 1 1 1 1 1 692560000 495900000 196660000 16799 3118 15428 85184;85185;85186;85187;85188;85189 103060;103061;103062 103062 3 SDPDLVAQNIDVVLNRR Unmodified 1923.0174 0.017387984 3090 Q9UBU9;Q9UBU9-2 NXF1 Nuclear RNA export factor 1 yes no 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 64.251 64.238 3 0.050221 19295 20211116_3434_TMUAki_TMT10x_P_F6 39.501 27.708 11451000 19103000 195980 18136000 12959000 19676000 14379000 11315000 11978000 13250000 16087000 10663000 17822000 1153100 18593000 12474000 19761000 14437000 11984000 12437000 12861000 15392000 2 2 2 2 2 2 2 2 2 2 2 6022900 10157000 22582 9739300 6681900 12739000 7703600 6641200 6098700 7126300 8321300 5608000 9476200 529610 10010000 6433900 12655000 7711000 7074500 6353500 6940000 7958500 1 1 1 1 1 1 1 1 1 1 1 5427700 8946100 173400 8396700 6277500 6937000 6675300 4673700 5879600 6123500 7765900 5055100 8345600 623500 8583000 6039700 7106200 6725600 4909600 6083300 5920800 7433100 1 1 1 1 1 1 1 1 1 1 1 1378100000 702620000 675500000 16800 3090 15429 85190;85191 103063 103063 1 SDPFLEFFR Unmodified 1156.5553 0.55530983 2608 Q99829 CPNE1 Copine-1 yes yes 0 0 0 0 By MS/MS By MS/MS 5 1.41 2 2 2 2 2 5 5 78.588 78.589 2 7.0442E-14 25525 20211116_3445_TMUAki_TMT10x_S_F6 209.84 180.17 68848000 113900000 443130 101390000 80230000 113870000 87202000 69049000 65661000 73988000 88523000 64106000 106240000 6065600 104510000 77116000 114220000 87421000 72614000 68552000 72057000 84687000 8 8 5 8 8 8 8 8 8 8 8 44124000 71813000 384480 63605000 47572000 85623000 54179000 44224000 42466000 48034000 57250000 41085000 66979000 3927600 65796000 45795000 84939000 54248000 47168000 44239000 46756000 54769000 4 4 3 4 4 4 4 4 4 4 4 24725000 42090000 58656 37787000 32658000 28244000 33023000 24825000 23195000 25954000 31273000 23021000 39258000 2138000 38710000 31321000 29285000 33173000 25447000 24314000 25302000 29918000 4 4 2 4 4 4 4 4 4 4 4 7372900000 4413900000 2959000000 16801 2608 15430 85192;85193;85194;85195;85196;85197;85198;85199;85200;85201 103064;103065;103066;103067;103068;103069;103070;103071;103072;103073 103072 10 SDPGLLTNTMDVFVK Oxidation (M) 1651.8127 0.81272309 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 0 By MS/MS 5 0 1 1 66.945 66.983 3 0.030661 20466 20211116_3444_TMUAki_TMT10x_S_F5 40.983 22.155 3519800 6331400 105970 6202200 3640800 3217800 3401400 2881300 2942100 3579000 4320900 3278000 5907400 392270 6291800 3491300 3454600 3448500 2967400 3062100 3466700 4125600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3519800 6331400 105970 6202200 3640800 3217800 3401400 2881300 2942100 3579000 4320900 3278000 5907400 392270 6291800 3491300 3454600 3448500 2967400 3062100 3466700 4125600 1 1 1 1 1 1 1 1 1 1 1 281850000 0 281850000 16802 1433 15431 85202 103074 103074 1943 1 SDPIMLLK Unmodified 915.50994 0.50993955 557 P08559;P08559-3;P08559-4;P08559-2 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial yes no 0 0 0 0 By MS/MS 6 0 1 1 64.56 64.517 2 0.057964 19802 20211116_3445_TMUAki_TMT10x_S_F6 62.88 48.363 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16803 557 15432 85203 103075 103075 1 SDPIQEIR Unmodified 956.49271 0.49270958 2647 Q9BS26 ERP44 Endoplasmic reticulum resident protein 44 yes yes 0 0 0 0 By MS/MS 2 0 1 1 36.247 36.346 2 0.094578 8714 20211116_3440_TMUAki_TMT10x_S_F2 49.418 15.621 191720 332550 1594.2 380640 197370 178800 230360 217080 242190 209180 290730 178520 310490 17460 381900 190180 195460 232310 218540 247590 204620 278950 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 191720 332550 1594.2 380640 197370 178800 230360 217080 242190 209180 290730 178520 310490 17460 381900 190180 195460 232310 218540 247590 204620 278950 1 1 1 1 1 1 1 1 1 1 1 10629000 0 10629000 16804 2647 15433 85204 103076 103076 1 SDPIQEIRDLAEITTLDR Unmodified 2084.075 0.074962442 2647 Q9BS26 ERP44 Endoplasmic reticulum resident protein 44 yes yes 0 0 0 1 By MS/MS 2 0 1 1 79.123 79.099 3 0.088937 26102 20211116_3440_TMUAki_TMT10x_S_F2 35.389 22.253 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16805 2647 15434 85205 103077 103077 1 SDPLCVLLQDVGGGSWAELGR Unmodified 2228.0896 0.089566649 2608 Q99829 CPNE1 Copine-1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.57 1.68 1 1 2 2 1 3 4 82.395 82.394 3 4.4718E-32 27079 20211116_3445_TMUAki_TMT10x_S_F6 166.29 147 2601900 4007100 71072 4357100 2903900 3572600 2894200 2506000 2397900 2686700 3307200 2423100 3740300 286180 4408500 2788500 3663900 2920900 2607100 2493400 2616600 3162200 5 5 5 5 5 5 5 5 5 5 5 1373500 2063900 20169 2296700 1411100 2144600 1388500 1244500 1174400 1324900 1629700 1279000 1926700 133200 2324300 1353700 2173900 1402900 1313200 1220300 1290700 1558100 3 3 3 3 3 3 3 3 3 3 3 1228400 1943200 50903 2060400 1492800 1428000 1505800 1261500 1223500 1361800 1677500 1144100 1813600 152980 2084200 1434800 1490000 1517900 1294000 1273100 1325900 1604200 2 2 2 2 2 2 2 2 2 2 2 757450000 340700000 416760000 16806 2608 15435 85206;85207;85208;85209;85210;85211;85212 103078;103079;103080;103081;103082;103083 103082 6 SDPLLIGIPTSENPFK Unmodified 1726.9142 0.91415169 3078 Q9UBI6 GNG12 Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12 yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 78.369 78.372 3 0.017004 27189 20211116_3435_TMUAki_TMT10x_P_F7 47.537 28.708 14923000 26835000 0 24301000 19864000 16725000 17856000 9365500 9156300 11555000 17425000 13894000 25031000 1223200 24856000 18990000 17340000 17948000 9959100 9989100 11195000 16553000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14923000 26835000 0 24301000 19864000 16725000 17856000 9365500 9156300 11555000 17425000 13894000 25031000 1223200 24856000 18990000 17340000 17948000 9959100 9989100 11195000 16553000 2 2 0 2 2 2 2 2 2 2 2 2180800000 636680000 1544100000 16807 3078 15436 85213;85214;85215;85216 103084;103085;103086 103084 3 SDPNRETDDTLVLSFVGQTR Unmodified 2249.0924 0.09240342 1847 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 3.38 1.32 1 1 2 2 2 4 4 63.475 63.339 3 6.1931E-42 19811 20211116_3431_TMUAki_TMT10x_P_F4 214.52 201.67 31703000 56124000 627720 51121000 39183000 49191000 38265000 41256000 37266000 38882000 43838000 29523000 52351000 3287800 52476000 37583000 50053000 38831000 42276000 38189000 38072000 42085000 7 7 6 7 7 7 7 7 7 7 7 11689000 19730000 123840 17936000 14495000 27161000 15260000 15483000 13926000 14420000 15969000 10884000 18403000 1093400 18562000 13923000 26838000 15398000 16300000 14298000 14127000 15341000 3 3 2 3 3 3 3 3 3 3 3 20014000 36394000 503880 33185000 24688000 22030000 23005000 25773000 23341000 24462000 27869000 18639000 33947000 2194400 33914000 23660000 23215000 23433000 25976000 23891000 23945000 26744000 4 4 4 4 4 4 4 4 4 4 4 11385000000 5261000000 6124100000 16808 1847 15437 85217;85218;85219;85220;85221;85222;85223;85224 103087;103088;103089;103090;103091;103092;103093;103094 103089 8 SDPTSYAGYIEDLKK Unmodified 1685.8148 0.81483158 1225 P54709;P54709-2 ATP1B3 Sodium/potassium-transporting ATPase subunit beta-3 yes no 0 0 0 1 By MS/MS By MS/MS 6.43 1.05 2 1 3 1 4 3 65.546 65.704 3 2.2579E-14 21766 20211116_3435_TMUAki_TMT10x_P_F7 129.01 111.52 27523000 47502000 237100 49742000 30860000 34327000 27376000 33497000 32191000 33298000 38613000 25628000 44333000 2486400 50357000 29513000 35902000 28100000 34094000 32766000 32529000 37050000 6 6 4 6 6 6 6 6 6 6 6 7870000 12588000 30697 12469000 10590000 14767000 10183000 8179000 7605000 8223400 9621900 7327500 11746000 659490 12764000 10142000 14754000 10270000 8649700 7921200 8029600 9219400 2 2 1 2 2 2 2 2 2 2 2 19653000 34914000 206400 37273000 20270000 19559000 17193000 25318000 24586000 25075000 28991000 18301000 32587000 1826900 37593000 19371000 21148000 17829000 25444000 24845000 24499000 27830000 4 4 3 4 4 4 4 4 4 4 4 1871700000 372200000 1499500000 16809 1225 15438 85225;85226;85227;85228;85229;85230;85231 103095;103096;103097;103098;103099;103100;103101;103102;103103;103104 103098 10 SDPVVSYR Unmodified 921.4556 0.45559579 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 33.395 33.289 2 0.00047956 10291 20211116_3441_TMUAki_TMT10x_S_F3 161.68 123.44 3455300 5917900 32097 5315400 5544300 5080000 4077600 3264700 4089500 3263700 4360600 3217400 5519800 345640 5461600 5281200 5148900 4213100 3410900 4169400 3187500 4198100 2 2 2 2 2 2 2 2 2 2 2 2149800 3588200 14923 3163300 4182900 3750200 2477400 2054200 2703300 2050000 2571800 2001800 3346600 220610 3265800 3968800 3746100 2609100 2174000 2735600 2002300 2485000 1 1 1 1 1 1 1 1 1 1 1 1305500 2329700 17174 2152100 1361400 1329800 1600200 1210500 1386200 1213700 1788800 1215700 2173200 125020 2195800 1312400 1402800 1604000 1236800 1433900 1185200 1713100 1 1 1 1 1 1 1 1 1 1 1 166170000 52950000 113220000 16810 653 15439 85232;85233 103105;103106 103106 2 SDPVVSYRETVSEESNVLCLSK Unmodified 2497.2006 0.20063324 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 1 By MS/MS By MS/MS 4.8 0.748 2 2 1 3 2 64.399 64.427 3 7.5622E-68 20770 20211116_3442_TMUAki_TMT10x_S_F4 238.87 218.57 31678000 53614000 328510 46266000 40587000 53931000 32274000 43311000 36312000 33351000 40870000 29496000 50000000 2876700 47832000 38716000 54230000 33296000 44273000 36927000 32983000 39285000 6 6 3 6 6 6 6 6 6 6 6 20966000 34739000 168550 30110000 20489000 43463000 23263000 28371000 23980000 21863000 26132000 19521000 32398000 1708100 31244000 19714000 43115000 23473000 29413000 24441000 21621000 25142000 4 4 1 4 4 4 4 4 4 4 4 10712000 18875000 159960 16156000 20098000 10468000 9011300 14940000 12332000 11488000 14738000 9974700 17603000 1168600 16588000 19002000 11115000 9823000 14861000 12486000 11362000 14143000 2 2 2 2 2 2 2 2 2 2 2 5148600000 3250100000 1898500000 16811 653 15440 85234;85235;85236;85237;85238 103107;103108;103109;103110;103111;103112 103111 6 SDPYLEFHK Unmodified 1134.5346 0.53457439 309 O75131 CPNE3 Copine-3 yes yes 0 0 0 0 By MS/MS 4 0 1 1 45.164 45.366 3 0.00013438 12893 20211116_3442_TMUAki_TMT10x_S_F4 90.108 71.328 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16812 309 15441 85239 103113 103113 1 SDQDYILKEGDLVK Unmodified 1621.8199 0.81991695 3217 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 0 1 By MS/MS 4 0.816 1 1 1 3 56.965 57.11 3 4.1437E-09 17292 20211116_3431_TMUAki_TMT10x_P_F4 123.97 93.835 2673800 5811900 58051 3287100 8756300 14452000 7313400 10673000 8809800 8580100 6444500 2490000 5413700 360960 3698700 8363200 13949000 7540100 10980000 8813000 8466000 6290000 1 1 1 1 1 1 1 1 1 1 1 2673800 5811900 58051 3287100 8756300 14452000 7313400 10673000 8809800 8580100 6444500 2490000 5413700 360960 3698700 8363200 13949000 7540100 10980000 8813000 8466000 6290000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 525220000 525220000 0 16813 3217 15442 85240;85241;85242 103114;103115;103116 103115 3 SDQNLQTALELTRR Unmodified 1643.8591 0.85909643 425 O95373 IPO7 Importin-7 yes yes 0 0 0 1 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 47.798 47.939 3 0.00029151 13001 20211116_3445_TMUAki_TMT10x_S_F6 81.992 53.186 18326000 36506000 189910 36478000 36309000 41539000 21097000 42807000 38566000 31685000 33939000 17063000 34064000 1842700 37292000 34437000 42034000 22736000 43126000 38306000 31403000 32883000 3 3 1 3 3 3 3 3 3 3 3 8856700 15674000 0 17753000 27624000 33424000 15946000 19157000 17051000 13949000 14469000 8245600 14634000 891660 18199000 26186000 32763000 16819000 20042000 17206000 13838000 14038000 2 2 0 2 2 2 2 2 2 2 2 9468800 20832000 189910 18725000 8685200 8115100 5151600 23650000 21515000 17735000 19470000 8817800 19430000 951050 19093000 8250500 9270700 5916900 23085000 21099000 17565000 18845000 1 1 1 1 1 1 1 1 1 1 1 869740000 577150000 292600000 16814 425 15443 85243;85244;85245 103117;103118;103119 103119 3 SDQQLDCALDLMR Acetyl (Protein N-term);Oxidation (M) 1621.7076 0.70760609 1063 P47756-2;P47756 CAPZB F-actin-capping protein subunit beta yes no 1 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 63.361 63.228 2 0.00010673 21419 20211116_3439_TMUAki_TMT10x_S_F1 55.401 47.802 3947000 6702900 0 6521800 4913400 6516200 4464800 5186200 4631800 4894500 4942400 3674300 6253800 246910 6666000 4693800 6608700 4557400 5331300 4715800 4792200 4758100 2 2 0 2 2 2 2 2 2 2 2 2061400 3692500 0 3573000 2618100 4692700 2471700 2600100 2345300 2443900 2593200 1919100 3445100 139290 3670200 2504100 4664600 2510900 2744600 2400200 2393300 2493900 1 1 0 1 1 1 1 1 1 1 1 1885600 3010400 0 2948800 2295300 1823500 1993000 2586000 2286500 2450600 2349200 1755200 2808800 107620 2995800 2189700 1944200 2046500 2586800 2315500 2398900 2264200 1 1 0 1 1 1 1 1 1 1 1 1840200000 1045900000 794270000 16815 1063 15444 85246;85247 103120;103121 103121 1384 2 SDRREDYYDIQLSIK Unmodified 1899.9327 0.9326553 2387 Q93009;Q93009-3 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes no 0 0 0 2 By matching By MS/MS 4.5 0.5 1 1 1 1 50.126 50.299 4 0.0091476 13710 20211116_3444_TMUAki_TMT10x_S_F5 59.709 39.341 2071100 3348100 36530 3672600 2015300 1951200 1745600 2769700 2333800 2319200 2959200 1928700 3125300 204970 3698000 1927800 2112300 1802900 2761200 2370600 2283600 2835300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2071100 3348100 36530 3672600 2015300 1951200 1745600 2769700 2333800 2319200 2959200 1928700 3125300 204970 3698000 1927800 2112300 1802900 2761200 2370600 2283600 2835300 1 1 1 1 1 1 1 1 1 1 1 638580000 311200000 327390000 16816 2387 15445 85248;85249 103122 103122 1 SDSEDICLFTKDEPNSTPEKTEQFYR Unmodified 3135.3979 0.39788908 377 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 0 0 0 2 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 58.473 58.32 4 8.9625E-12 17822 20211116_3431_TMUAki_TMT10x_P_F4 105.24 90.835 24131000 43992000 725820 33674000 33775000 46237000 31365000 41399000 35856000 37879000 36604000 22474000 41010000 2812100 35270000 32369000 46220000 32080000 42230000 36307000 37139000 35287000 7 7 7 7 7 7 7 7 7 7 7 11273000 19683000 113240 14652000 15808000 30479000 17530000 18451000 17391000 17196000 15731000 10497000 18348000 1103600 15539000 15207000 29804000 17687000 19329000 17640000 16846000 15226000 3 3 3 3 3 3 3 3 3 3 3 12858000 24309000 612580 19022000 17967000 15758000 13836000 22948000 18465000 20683000 20873000 11977000 22663000 1708500 19730000 17161000 16416000 14394000 22901000 18668000 20294000 20061000 4 4 4 4 4 4 4 4 4 4 4 6004000000 3504900000 2499100000 16817 377 15446 85250;85251;85252;85253 103123;103124;103125;103126 103124 4 SDSEKLNLDSIIGR Acetyl (Protein N-term) 1587.8104 0.8104149 1333 P62136;P62136-2;P62136-3 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit yes no 1 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 68.374 68.09 2 2.9047E-30 22299 20211116_3442_TMUAki_TMT10x_S_F4 87.568 50.874 1258900 2187600 0 1798200 1661600 3359300 2089800 2357700 2269400 2275700 1959100 1172100 2039800 104620 1885300 1603700 3303400 2102900 2445200 2289800 2225900 1899500 1 1 0 1 1 1 1 1 1 1 1 1258900 2187600 0 1798200 1661600 3359300 2089800 2357700 2269400 2275700 1959100 1172100 2039800 104620 1885300 1603700 3303400 2102900 2445200 2289800 2225900 1899500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 193020000 193020000 0 16818 1333 15447 85254;85255;85256;85257 103127;103128;103129;103130 103130 4 SDSFENPVLQQHFR Unmodified 1702.8063 0.80633258 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 By MS/MS By MS/MS 4.44 1.32 2 2 3 5 4 10 6 47.957 48.042 2;3 1.0702E-99 13548 20211116_3431_TMUAki_TMT10x_P_F4 367.32 334.38 50922000 86158000 1463200 95975000 83083000 110580000 66900000 76404000 78969000 69709000 77820000 47421000 80432000 5318700 97436000 79317000 110980000 69079000 79206000 79768000 68357000 75106000 18 18 5 18 18 18 18 18 18 18 18 40624000 67588000 1414000 77481000 73749000 100940000 58081000 60462000 62703000 55600000 61462000 37833000 63104000 4541400 78695000 70385000 100480000 59877000 63371000 63543000 54502000 59329000 13 13 3 13 13 13 13 13 13 13 13 10298000 18570000 49139 18495000 9333500 9631700 8818800 15942000 16266000 14109000 16358000 9588400 17327000 777290 18740000 8932400 10501000 9202700 15835000 16225000 13855000 15777000 5 5 2 5 5 5 5 5 5 5 5 32065000000 21581000000 10484000000 16819 647 15448 85258;85259;85260;85261;85262;85263;85264;85265;85266;85267;85268;85269;85270;85271;85272;85273 103131;103132;103133;103134;103135;103136;103137;103138;103139;103140;103141;103142;103143;103144;103145;103146;103147;103148;103149;103150;103151;103152;103153 103136 23 SDSPTGDVLLDETLK Unmodified 1588.7832 0.7831971 2807 Q9H4A5;Q9H4A5-2 GOLPH3L Golgi phosphoprotein 3-like yes no 0 0 0 0 By MS/MS 2 0 1 1 66.261 65.951 3 0.00033227 22123 20211116_3429_TMUAki_TMT10x_P_F2 67.846 54.866 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16820 2807 15449 85274 103154 103154 1 SDSYVELSQYR Unmodified 1345.615 0.61500956 1174 P52298;P52298-3 NCBP2 Nuclear cap-binding protein subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 46.652 46.478 2 3.7792E-18 13366 20211116_3442_TMUAki_TMT10x_S_F4 201.61 163.45 3319600 5268200 37446 7444200 7029400 6828100 4070400 5109700 5762900 4287900 5401500 3090900 4923900 321550 7431400 6665400 6955400 4335900 5257300 5775900 4221600 5221800 3 3 2 3 3 3 3 3 3 3 3 1945800 3234800 37446 4156500 6179700 5957900 3290800 3097000 3478100 2710800 3333000 1812000 3021900 255520 4202100 5855000 5894100 3494900 3281600 3525000 2663400 3219700 2 2 2 2 2 2 2 2 2 2 2 1373800 2033400 0 3287700 849730 870230 779540 2012700 2284800 1577100 2068500 1278800 1902100 66037 3229300 810360 1061300 840990 1975600 2250900 1558200 2002100 1 1 0 1 1 1 1 1 1 1 1 324870000 221000000 103870000 16821 1174 15450 85275;85276;85277 103155;103156;103157;103158 103158 4 SDVASVNWSAPSQAFPR Unmodified 1817.8697 0.86966111 2669 Q9BTW9;Q9BTW9-4 TBCD Tubulin-specific chaperone D yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 73.036 73.41 3 0.00019278 19537 20211116_3435_TMUAki_TMT10x_P_F7 69.188 56.828 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16822 2669 15451 85278;85279 103159;103160 103159 2 SDVDLYQVR Unmodified 1093.5404 0.54038805 75 O00233;O00233-2 PSMD9 26S proteasome non-ATPase regulatory subunit 9 yes no 0 0 0 0 By MS/MS 3 0 1 1 42.301 42.356 2 0.0017966 12872 20211116_3430_TMUAki_TMT10x_P_F3 93.467 65.293 492550 735830 713.2 1070400 1735200 1325900 795140 595480 733340 578330 803730 458620 687860 58905 1072200 1640200 1318500 853790 641790 751250 565530 773150 1 1 1 1 1 1 1 1 1 1 1 492550 735830 713.2 1070400 1735200 1325900 795140 595480 733340 578330 803730 458620 687860 58905 1072200 1640200 1318500 853790 641790 751250 565530 773150 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 43407000 43407000 0 16823 75 15452 85280 103161 103161 1 SDVEAIFSK Unmodified 994.49713 0.49712625 545 P07910-2;P07910-4;P07910;O60812;B7ZW38;B2RXH8;P0DMR1 HNRNPC;HNRNPCL1;HNRNPCL3;HNRNPCL2;HNRNPCL4 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2;Heterogeneous nuclear ribonucleoprotein C-like 4 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 60.418 60.487 2 2.7998E-05 18639 20211116_3431_TMUAki_TMT10x_P_F4 154.84 99.163 40791000 62236000 143780 76626000 74166000 64640000 47276000 47569000 44169000 45071000 56826000 37981000 58127000 3821200 76975000 70436000 66206000 49264000 49151000 45519000 44121000 54426000 5 5 3 5 5 5 5 5 5 5 5 23974000 35303000 126440 44260000 59020000 51325000 32218000 26940000 25147000 26129000 32057000 22322000 32975000 2462800 44626000 55916000 51302000 33863000 28597000 26137000 25553000 30710000 3 3 2 3 3 3 3 3 3 3 3 16817000 26933000 17349 32365000 15146000 13315000 15058000 20629000 19022000 18941000 24769000 15658000 25152000 1358400 32349000 14519000 14904000 15401000 20554000 19382000 18569000 23716000 2 2 1 2 2 2 2 2 2 2 2 3407800000 1955200000 1452600000 16824 545 15453 85281;85282;85283;85284 103162;103163;103164;103165;103166 103162 5 SDVFPGPSFR Unmodified 1107.5349 0.53490874 2151 Q8IX01;Q8IX01-4;Q8IX01-3 SUGP2 SURP and G-patch domain-containing protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 52.574 52.734 2 0.00016472 14921 20211116_3445_TMUAki_TMT10x_S_F6 90.761 66.426 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16825 2151 15454 85285;85286 103167;103168 103168 2 SDVKFEDRFDK Unmodified 1384.6623 0.6622941 2876 Q9HD45 TM9SF3 Transmembrane 9 superfamily member 3 yes yes 0 0 0 2 By MS/MS 5 0 1 1 40.453 40.576 4 0.015078 9790 20211116_3444_TMUAki_TMT10x_S_F5 61.375 43.886 1804400 2836400 0 3328400 1928200 1408700 1762900 1977200 1829300 1882700 2460800 1680100 2648500 151060 3332000 1844600 1566300 1798900 1978800 1880500 1842700 2354300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1804400 2836400 0 3328400 1928200 1408700 1762900 1977200 1829300 1882700 2460800 1680100 2648500 151060 3332000 1844600 1566300 1798900 1978800 1880500 1842700 2354300 1 1 0 1 1 1 1 1 1 1 1 134050000 0 134050000 16826 2876 15455 85287 103169 103169 1 SDVLETVVLINPSDEAVSTEVR Unmodified 2371.2118 0.21184985 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 78.212 78.186 3 2.9861E-14 25553 20211116_3428_TMUAki_TMT10x_P_F1 127.5 117.85 10290000 18218000 325210 15979000 12836000 19898000 14511000 12894000 12646000 13853000 14162000 9583600 16991000 1191900 16518000 12370000 19872000 14573000 13492000 13001000 13490000 13615000 4 4 4 4 4 4 4 4 4 4 4 5789200 9925300 70925 9102800 5820700 13158000 7595000 7306900 7034300 7616500 7421700 5390800 9258300 546500 9405100 5630100 13023000 7593800 7733700 7194500 7425900 7147400 2 2 2 2 2 2 2 2 2 2 2 4501000 8293100 254280 6876200 7015600 6740300 6915500 5587400 5611700 6236300 6740700 4192800 7733100 645370 7112900 6739800 6849100 6979600 5758500 5806100 6064000 6467600 2 2 2 2 2 2 2 2 2 2 2 2174100000 725610000 1448500000 16827 1057 15456 85288;85289 103170;103171;103172;103173 103170 4 SDVQIHVPTFTFR Unmodified 1545.794 0.79397698 347 O75569;O75569-3;O75569-2 PRKRA Interferon-inducible double-stranded RNA-dependent protein kinase activator A yes no 0 0 0 0 By MS/MS 8 0 1 1 60.7 60.705 3 1.4603E-07 17920 20211116_3447_TMUAki_TMT10x_S_F8 120.9 97.669 2779900 5005000 49867 4759400 3638400 3564700 3553600 4144300 3904100 3690200 4228700 2588700 4669300 288970 4854800 3489600 3718200 3619800 4170800 3967900 3622800 4069200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2779900 5005000 49867 4759400 3638400 3564700 3553600 4144300 3904100 3690200 4228700 2588700 4669300 288970 4854800 3489600 3718200 3619800 4170800 3967900 3622800 4069200 2 2 2 2 2 2 2 2 2 2 2 834850000 0 834850000 16828 347 15457 85290 103174;103175 103175 2 SDYDREALLGVQEDVDEYVK Unmodified 2342.0914 0.091400367 1701 Q14257;Q14257-2 RCN2 Reticulocalbin-2 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 73.571 73.516 3 1.8462E-51 25629 20211116_3439_TMUAki_TMT10x_S_F1 231.76 209.32 24592000 42424000 123050 36618000 29568000 35048000 31548000 22222000 23284000 23513000 29608000 22899000 39564000 2206000 37743000 28407000 35514000 31641000 23279000 24274000 22911000 28366000 4 4 3 4 4 4 4 4 4 4 4 13436000 21896000 16273 19041000 11603000 20703000 15218000 11513000 12139000 12054000 15168000 12510000 20421000 1086200 19652000 11217000 20782000 15152000 12186000 12591000 11751000 14538000 2 2 1 2 2 2 2 2 2 2 2 11157000 20528000 106780 17577000 17965000 14346000 16329000 10709000 11145000 11458000 14440000 10389000 19144000 1119800 18091000 17191000 14732000 16489000 11094000 11682000 11160000 13827000 2 2 2 2 2 2 2 2 2 2 2 1775000000 983380000 791660000 16829 1701 15458 85291;85292 103176;103177;103178;103179 103179 4 SDYLNTFEFMDK Oxidation (M) 1524.6443 0.64426077 364 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 0 0 1 0 By MS/MS By MS/MS 4.82 0.716 4 5 2 4 7 67.579 67.626 2;3 4.2129E-05 20770 20211116_3444_TMUAki_TMT10x_S_F5 100.58 80.823 16094000 26774000 150820 25409000 19314000 32875000 19929000 21208000 21417000 22569000 21800000 14986000 24978000 1489400 26129000 18542000 32769000 20228000 22192000 21737000 21986000 21017000 5 5 3 5 5 5 5 5 5 5 5 13426000 22555000 150820 21479000 16283000 30011000 17289000 17488000 17755000 18495000 17960000 12502000 21042000 1288100 22115000 15647000 29765000 17499000 18443000 18050000 18022000 17319000 4 4 3 4 4 4 4 4 4 4 4 2668200 4219000 0 3930000 3030600 2864600 2639600 3719100 3661900 4073600 3839200 2484200 3935700 201280 4013700 2894400 3003200 2729500 3748800 3686900 3963900 3698000 1 1 0 1 1 1 1 1 1 1 1 1999500000 1442800000 556650000 16830 364 15459 85293;85294;85295;85296;85297;85298;85299;85300;85301;85302;85303 103180;103181;103182;103183;103184;103185;103186;103187;103188;103189;103190;103191 103189 286 12 SEAANGNLDFVLSFLK Unmodified 1723.8781 0.87810054 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 81.131 81.145 3 4.9136E-13 26261 20211116_3447_TMUAki_TMT10x_S_F8 140.96 110.9 6625000 11804000 14670 9348800 6374700 7251000 7418100 4768100 4632700 5347300 7722500 6167900 11005000 468470 9679300 6133600 7460400 7383700 4990500 4944500 5198600 7354000 3 3 1 3 3 3 3 3 3 3 3 3326100 5542100 0 4383900 2449200 3619100 2777600 2171500 2320400 2347500 3435700 3096400 5167100 207130 4542700 2353000 3701500 2786100 2286200 2420200 2285400 3279800 1 1 0 1 1 1 1 1 1 1 1 3299000 6261500 14670 4964800 3925600 3631900 4640400 2596500 2312300 2999800 4286800 3071500 5837800 261350 5136600 3780600 3758900 4597600 2704300 2524300 2913100 4074200 2 2 1 2 2 2 2 2 2 2 2 2377600000 943300000 1434300000 16831 1018 15460 85304;85305;85306;85307 103192;103193;103194 103194 3 SEAPETPMEEEAELVLTEK Oxidation (M) 2146.9828 0.98276112 1920 Q5JTH9;Q5JTH9-2;Q5JTH9-3 RRP12 RRP12-like protein yes no 0 0 1 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 66.674 66.527 3 1.9109E-12 20689 20211116_3428_TMUAki_TMT10x_P_F1 130.27 119.66 9689600 15948000 86776 14893000 10825000 16042000 12114000 11691000 12782000 12798000 13028000 9022100 14878000 843090 15285000 10414000 16174000 12241000 12139000 12983000 12453000 12560000 4 4 2 4 4 4 4 4 4 4 4 5050000 8021400 78585 6988200 5491500 10911000 6976400 5557400 6101700 5986200 6504000 4702500 7480900 477690 7260700 5306300 10753000 6971800 5933400 6260000 5828800 6261700 2 2 1 2 2 2 2 2 2 2 2 4639600 7927000 8191.2 7905100 5333500 5131200 5137900 6133500 6680600 6811600 6523800 4319700 7396700 365400 8024600 5107200 5420900 5269600 6205800 6723300 6624700 6298100 2 2 1 2 2 2 2 2 2 2 2 1364700000 708830000 655880000 16832 1920 15461 85308;85309;85310 103195;103196;103197;103198 103195 2515 4 SEAPNWATQDSGFY Unmodified 1571.6529 0.65285163 1272 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 69.021 68.923 2 0.017071 23768 20211116_3430_TMUAki_TMT10x_P_F3 58.676 45.097 1793300 3159200 0 2969900 2115400 3618800 2307400 1777300 1744200 1859600 2384100 1669600 2947100 133730 3052900 2031900 3605200 2313000 1902400 1821800 1812800 2280000 1 1 0 1 1 1 1 1 1 1 1 1793300 3159200 0 2969900 2115400 3618800 2307400 1777300 1744200 1859600 2384100 1669600 2947100 133730 3052900 2031900 3605200 2313000 1902400 1821800 1812800 2280000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 560180000 560180000 0 16833 1272 15462 85311;85312;85313 103199;103200 103199 2 SEASLHPVLMSEAPWNTR Oxidation (M) 2039.9735 0.97347426 459 O96019;O96019-2 ACTL6A Actin-like protein 6A yes no 0 0 1 0 By MS/MS 8 0 1 1 49.171 49.071 3 0.0073809 13282 20211116_3447_TMUAki_TMT10x_S_F8 51.566 40.622 620960 1362800 21155 1418500 789470 676120 733300 1153900 1124200 955060 1139800 578330 1271800 73558 1432100 756850 745310 758850 1143100 1127100 940950 1099100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 620960 1362800 21155 1418500 789470 676120 733300 1153900 1124200 955060 1139800 578330 1271800 73558 1432100 756850 745310 758850 1143100 1127100 940950 1099100 1 1 1 1 1 1 1 1 1 1 1 128230000 0 128230000 16834 459 15463 85314 103201 103201 339 1 SEATAAIHSFFK Unmodified 1307.651 0.65100113 2496 Q96I59 NARS2 Probable asparagine--tRNA ligase, mitochondrial yes yes 0 0 0 0 By MS/MS 8 0 1 1 56.198 56.339 3 3.8961E-12 16685 20211116_3436_TMUAki_TMT10x_P_F8 132.59 90.031 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16835 2496 15464 85315 103202 103202 1 SEATFQFTVER Unmodified 1313.6252 0.62518031 2387 Q93009;Q93009-3 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 51.285 51.185 2 4.1818E-23 17585 20211116_3441_TMUAki_TMT10x_S_F3 238.51 187.55 18168000 29663000 28325 29687000 21378000 30268000 20553000 22607000 21955000 23039000 23438000 16915000 27678000 1412300 30293000 20468000 30627000 20934000 23385000 22327000 22483000 22564000 6 6 3 6 6 6 6 6 6 6 6 9869400 15740000 0 15676000 12689000 20956000 12188000 12037000 12437000 12940000 12965000 9188100 14687000 692480 16076000 12144000 20823000 12397000 12715000 12660000 12601000 12490000 3 3 0 3 3 3 3 3 3 3 3 8298500 13923000 28325 14011000 8688300 9311900 8364000 10570000 9518300 10099000 10473000 7726900 12992000 719860 14217000 8324400 9804500 8536700 10670000 9666600 9882600 10074000 3 3 3 3 3 3 3 3 3 3 3 2474200000 1225000000 1249100000 16836 2387 15465 85316;85317;85318;85319;85320;85321 103203;103204;103205;103206;103207;103208 103207 6 SEAVVEYVFSGSR Unmodified 1428.6885 0.68850885 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.64 1.07 2 3 3 3 5 6 65.081 65.223 2;3 7.4999E-36 20622 20211116_3431_TMUAki_TMT10x_P_F4 265.36 223.25 38528000 65822000 89419 62192000 45300000 53446000 45619000 42453000 40839000 43098000 48954000 35872000 61405000 3050300 63572000 43428000 54739000 46108000 43738000 42044000 42065000 46973000 9 9 3 9 9 9 9 9 9 9 9 15717000 25682000 20584 24336000 17358000 29325000 19108000 17686000 16478000 17116000 19125000 14633000 23959000 1182000 24996000 16678000 29305000 19209000 18552000 16972000 16740000 18367000 4 4 1 4 4 4 4 4 4 4 4 22811000 40139000 68834 37856000 27942000 24121000 26510000 24767000 24361000 25982000 29829000 21238000 37446000 1868300 38576000 26750000 25434000 26899000 25185000 25072000 25325000 28606000 5 5 2 5 5 5 5 5 5 5 5 7130900000 3370500000 3760400000 16837 2048 15466 85322;85323;85324;85325;85326;85327;85328;85329;85330;85331;85332 103209;103210;103211;103212;103213;103214;103215;103216;103217;103218;103219;103220 103209 12 SECLNNIGDSSPLIR Unmodified 1673.8043 0.80428367 2381 Q92973;Q92973-2 TNPO1 Transportin-1 yes no 0 0 0 0 By MS/MS By MS/MS 4.25 0.433 3 1 2 2 52.72 52.865 2;3 5.1926E-24 15544 20211116_3431_TMUAki_TMT10x_P_F4 194.83 165.78 10934000 19280000 299750 20383000 14781000 16486000 12311000 14929000 14332000 12970000 15656000 10182000 17995000 1228100 20658000 14128000 17001000 12679000 15199000 14539000 12748000 15062000 5 5 4 5 5 5 5 5 5 5 5 4706200 7850600 76351 7953800 8053500 10493000 6239500 5886900 5224400 5308600 6031900 4382400 7325900 496620 8144800 7680300 10430000 6392500 6200500 5388000 5208500 5793700 2 2 1 2 2 2 2 2 2 2 2 6227500 11429000 223400 12430000 6727400 5993400 6071600 9042200 9108000 7661200 9624300 5800100 10669000 731500 12513000 6447600 6571200 6286900 8998300 9151300 7539200 9268200 3 3 3 3 3 3 3 3 3 3 3 1550100000 818940000 731210000 16838 2381 15467 85333;85334;85335;85336 103221;103222;103223;103224;103225 103222 5 SEDDESGAGELTREELR Unmodified 1891.8395 0.83954278 913 P33993;P33993-3;P33993-2 MCM7 DNA replication licensing factor MCM7 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 36.746 36.716 3 8.7687E-71 8646 20211116_3428_TMUAki_TMT10x_P_F1 314.85 279.38 1065100 1479000 0 3278100 3072900 2139200 1250800 1340500 2035000 947910 1656200 991540 1386800 97205 3200100 2899400 2231600 1388300 1391400 2022500 941950 1609400 2 2 0 2 2 2 2 2 2 2 2 678130 898900 0 2062500 2899800 1967100 1070000 807740 1292900 577300 1022900 631260 843120 68573 2020500 2733200 1983800 1187900 872860 1295900 573320 995150 1 1 0 1 1 1 1 1 1 1 1 386950 580100 0 1215600 173190 172050 180850 532730 742150 370610 633270 360280 543670 28631 1179600 166230 247750 200420 518590 726580 368630 614270 1 1 0 1 1 1 1 1 1 1 1 530480000 366300000 164180000 16839 913 15468 85337;85338 103226;103227 103226 2 SEDFSLPAYMDR Oxidation (M) 1445.6133 0.613295 650 P13073 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes yes 0 0 1 0 By MS/MS By matching 3 0.816 1 1 1 2 1 53.038 52.92 2 0.00086651 17234 20211116_3430_TMUAki_TMT10x_P_F3 82.645 59.815 6555600 10908000 30730 11629000 11626000 15392000 9008600 8561700 8848000 7924100 8985700 6103100 10181000 513970 11869000 11075000 15295000 9269600 9030600 9013300 7765400 8663900 3 3 1 3 3 3 3 3 3 3 3 6555600 10908000 30730 11629000 11626000 15392000 9008600 8561700 8848000 7924100 8985700 6103100 10181000 513970 11869000 11075000 15295000 9269600 9030600 9013300 7765400 8663900 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 416150000 342970000 73180000 16840 650 15469 85339;85340;85341 103228;103229;103230 103229 704 3 SEDFSLPAYMDR Unmodified 1429.6184 0.61838038 650 P13073 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes yes 0 0 0 0 By MS/MS 4 0 1 1 61.653 61.516 2 3.9627E-05 19586 20211116_3442_TMUAki_TMT10x_S_F4 98.04 70.176 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16841 650 15469 85342 103231 103231 1 SEDFSLPAYMDRR Oxidation (M) 1601.7144 0.71440603 650 P13073 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes yes 0 0 1 1 By MS/MS By MS/MS 3 0.707 1 2 1 1 3 43.831 43.817 3 5.069E-05 12312 20211116_3442_TMUAki_TMT10x_S_F4 96.82 73.812 5747800 9070200 4772.6 11321000 5151000 5277200 4505800 6849700 6962100 5442200 7574100 5351400 8471900 427650 11300000 4920200 5784200 4680200 6842800 6997000 5373100 7287500 4 4 1 4 4 4 4 4 4 4 4 599190 922990 0 1141800 1328100 1415300 717210 759350 684780 608370 846940 557740 862070 39129 1153500 1256800 1410200 758440 800640 703820 600390 812000 1 1 0 1 1 1 1 1 1 1 1 5148600 8147200 4772.6 10179000 3822900 3861900 3788600 6090300 6277300 4833800 6727100 4793700 7609800 388520 10146000 3663400 4374000 3921800 6042100 6293100 4772700 6475500 3 3 1 3 3 3 3 3 3 3 3 1762000000 302520000 1459500000 16842 650 15470 85343;85344;85345;85346 103232;103233;103234;103235 103235 704 4 SEDFSLPAYMDRR Unmodified 1585.7195 0.7194914 650 P13073 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 51.629 51.73 3 7.9097E-15 14220 20211116_3444_TMUAki_TMT10x_S_F5 171.99 141.74 25026000 41080000 398780 44427000 33652000 32725000 24724000 25125000 22935000 21857000 32518000 23303000 38345000 2388600 44912000 32056000 33889000 25490000 25831000 23751000 21481000 31073000 6 6 3 6 6 6 6 6 6 6 6 14586000 22442000 265950 25582000 22632000 24406000 16867000 13211000 11718000 11062000 18623000 13582000 20952000 1512200 25859000 21568000 24684000 17251000 13932000 12391000 10892000 17751000 3 3 1 3 3 3 3 3 3 3 3 10440000 18639000 132830 18845000 11021000 8319100 7856800 11915000 11217000 10795000 13895000 9720700 17393000 876370 19053000 10488000 9205000 8239000 11899000 11360000 10589000 13322000 3 3 2 3 3 3 3 3 3 3 3 3170800000 1671200000 1499600000 16843 650 15470 85347;85348;85349;85350;85351 103236;103237;103238;103239;103240;103241 103241 6 SEDLDNSIDKTEAGIK Unmodified 1733.8319 0.8319382 3219 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 50.028 50.191 3 1.411E-06 14473 20211116_3431_TMUAki_TMT10x_P_F4 101.78 75.917 2163200 3134300 0 5132500 11070000 7036500 4115000 3597500 4627000 2631300 4129500 2013700 2932100 246440 5123300 10436000 6973600 4553600 3802300 4667100 2609700 3999000 1 1 0 1 1 1 1 1 1 1 1 2163200 3134300 0 5132500 11070000 7036500 4115000 3597500 4627000 2631300 4129500 2013700 2932100 246440 5123300 10436000 6973600 4553600 3802300 4667100 2609700 3999000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 334370000 334370000 0 16844 3219 15471 85352;85353 103242;103243 103242 2 SEDLLDYGPFR Unmodified 1310.6143 0.61428128 494 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.22 0.916 2 4 2 1 6 3 59.548 59.412 2 1.8064E-14 23286 20211116_3429_TMUAki_TMT10x_P_F2 190.02 167.24 34005000 56606000 138810 52649000 36421000 54539000 41368000 35982000 35232000 38951000 42606000 31662000 52805000 2855600 54019000 35047000 55027000 41512000 37609000 36373000 37919000 40872000 9 9 5 9 9 9 9 9 9 9 9 23130000 36973000 51321 34524000 23341000 41173000 26778000 23472000 22872000 25610000 27532000 21536000 34491000 1841500 35492000 22461000 41137000 26861000 24823000 23605000 24924000 26415000 6 6 2 6 6 6 6 6 6 6 6 10875000 19633000 87484 18126000 13080000 13365000 14590000 12509000 12360000 13340000 15074000 10127000 18314000 1014000 18526000 12585000 13890000 14651000 12787000 12768000 12995000 14458000 3 3 3 3 3 3 3 3 3 3 3 6008400000 3268800000 2739600000 16845 494 15472 85354;85355;85356;85357;85358;85359;85360;85361;85362 103244;103245;103246;103247;103248;103249;103250;103251;103252 103244 9 SEDPDQQYLILNTAR Unmodified 1761.8533 0.85334235 2541 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.866 1 3 3 1 5 3 55.571 55.367 2;3 7.3027E-82 18235 20211116_3430_TMUAki_TMT10x_P_F3 317.12 290.45 13264000 23234000 46866 21352000 12134000 12760000 13444000 17892000 16695000 17184000 19432000 12349000 21673000 962630 21787000 11660000 13644000 13669000 17911000 16939000 16812000 18660000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13264000 23234000 46866 21352000 12134000 12760000 13444000 17892000 16695000 17184000 19432000 12349000 21673000 962630 21787000 11660000 13644000 13669000 17911000 16939000 16812000 18660000 3 3 2 3 3 3 3 3 3 3 3 1064400000 0 1064400000 16846 2541 15473 85363;85364;85365;85366;85367;85368;85369;85370 103253;103254;103255;103256;103257;103258;103259;103260 103256 8 SEDVWLEAAR Unmodified 1174.5619 0.56185177 395 O94906;O94906-2 PRPF6 Pre-mRNA-processing factor 6 yes no 0 0 0 0 By matching By MS/MS 2.33 0.943 1 2 1 2 52.624 52.374 2 0.0023173 17081 20211116_3439_TMUAki_TMT10x_S_F1 79.974 44.094 2226500 3480500 29453 4120600 1975400 1639100 1862900 2137700 2176800 2033900 2682300 2073300 3250100 208530 4121400 1893100 1834100 1905200 2145200 2218800 1990700 2571800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2226500 3480500 29453 4120600 1975400 1639100 1862900 2137700 2176800 2033900 2682300 2073300 3250100 208530 4121400 1893100 1834100 1905200 2145200 2218800 1990700 2571800 1 1 1 1 1 1 1 1 1 1 1 202620000 113460000 89160000 16847 395 15474 85371;85372;85373 103261;103262 103261 2 SEEAHAEDSVMDHHFR Oxidation (M) 1911.7806 0.78058811 2232 Q8NC51;Q8NC51-3;Q8NC51-2;Q8NC51-4 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 0 0 1 0 By MS/MS By matching 1.5 0.5 2 2 3 1 26.074 25.981 4;5 1.0183E-05 6732 20211116_3429_TMUAki_TMT10x_P_F2 97.579 89.604 238690 371940 6711.1 353140 380310 495600 254440 259660 292200 296640 328920 222290 346990 27275 363720 361850 490790 265840 277020 296920 288190 316160 3 3 2 3 3 3 3 3 3 3 3 238690 371940 6711.1 353140 380310 495600 254440 259660 292200 296640 328920 222290 346990 27275 363720 361850 490790 265840 277020 296920 288190 316160 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39277000 33516000 5761700 16848 2232 15475 85374;85375;85376;85377 103263;103264;103265 103265 2635 3 SEEAHAEDSVMDHHFR Unmodified 1895.7857 0.78567349 2232 Q8NC51;Q8NC51-3;Q8NC51-2;Q8NC51-4 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 0 0 0 0 By MS/MS 1.33 0.471 2 1 3 31.357 31.282 4;5 8.5433E-11 6525 20211116_3428_TMUAki_TMT10x_P_F1 132.81 122.89 615750 871420 7336 1026700 1171700 1086900 693100 553730 546240 536500 729820 573380 813710 65674 1037300 1111900 1091500 723520 589380 568650 524680 698350 3 3 3 3 3 3 3 3 3 3 3 615750 871420 7336 1026700 1171700 1086900 693100 553730 546240 536500 729820 573380 813710 65674 1037300 1111900 1091500 723520 589380 568650 524680 698350 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 74444000 74444000 0 16849 2232 15475 85378;85379;85380 103266;103267;103268 103266 3 SEEEFIHINNK Unmodified 1358.6466 0.64664404 1760 Q15046;Q15046-2 KARS Lysine--tRNA ligase yes no 0 0 0 0 By MS/MS By MS/MS 3 0.707 1 2 1 1 3 43.217 43.205 3 1.2407E-05 13153 20211116_3430_TMUAki_TMT10x_P_F3 102.53 85.591 4242400 7088100 48567 8712300 4825400 4260200 4080000 4764200 5315500 4150100 6013800 3950400 6620000 400280 8706600 4610700 4625900 4215800 4800100 5378300 4078500 5779700 4 4 3 4 4 4 4 4 4 4 4 796480 1075700 0 1542600 1837100 1411800 924110 619700 724750 641320 990770 741560 1005500 75738 1538700 1738300 1428500 978930 670690 755470 625460 947520 1 1 0 1 1 1 1 1 1 1 1 3445900 6012300 48567 7169700 2988300 2848300 3155900 4144500 4590800 3508800 5023000 3208900 5614500 324540 7167900 2872500 3197400 3236800 4129400 4622900 3453100 4832200 3 3 3 3 3 3 3 3 3 3 3 237150000 65965000 171190000 16850 1760 15476 85381;85382;85383;85384 103269;103270;103271 103269 3 SEEEIDFLR Unmodified 1136.535 0.53496832 3224 Q9Y262;Q9Y262-2 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 0 0 0 0 By MS/MS 1 0 1 1 54.768 54.768 2 2.3566E-05 15966 20211116_3428_TMUAki_TMT10x_P_F1 141.2 86.788 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16851 3224 15477 85385 103272 103272 1 SEESVSRLPEEIR Unmodified 1529.7686 0.76855009 1536 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 1 By MS/MS 2 0 1 1 35.688 35.787 3 5.706E-12 8673 20211116_3440_TMUAki_TMT10x_S_F2 154.47 90.064 259900 389880 0 558610 245890 202150 206750 456040 503240 371700 461030 241980 364430 19747 552620 234690 233630 220940 448330 497490 366490 446040 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 259900 389880 0 558610 245890 202150 206750 456040 503240 371700 461030 241980 364430 19747 552620 234690 233630 220940 448330 497490 366490 446040 1 1 0 1 1 1 1 1 1 1 1 52428000 0 52428000 16852 1536 15478 85386 103273 103273 1 SEETLDEGPPK Unmodified 1200.551 0.55101232 1472 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 0 0 0 0 By MS/MS 2 0 1 1 36.401 36.5 2 0.00010514 8750 20211116_3440_TMUAki_TMT10x_S_F2 96.342 70.956 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16853 1472 15479 85387 103274 103274 1 SEETNTEIVECILK Unmodified 1663.7975 0.79746695 1039 P46013;P46013-2 MKI67 Antigen KI-67 yes no 0 0 0 0 By MS/MS 2 0 1 1 69.111 68.811 3 4.9693E-05 23278 20211116_3429_TMUAki_TMT10x_P_F2 84.759 57.424 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16854 1039 15480 85388 103275 103275 1 SEFGSVDGPLPHPR Unmodified 1493.7263 0.72629134 1918 Q5JRA6;Q5JRA6-4;Q5JRA6-2 MIA3 Melanoma inhibitory activity protein 3 yes no 0 0 0 0 By MS/MS 4 0 1 1 41.668 41.877 3 0.0002312 11476 20211116_3442_TMUAki_TMT10x_S_F4 75.589 50.203 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16855 1918 15481 85389 103276 103276 1 SEFVILRDEK Unmodified 1234.6558 0.65575216 1219 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 4.25 0.829 1 1 2 3 1 48.278 48.451 3 1.8597E-07 13696 20211116_3431_TMUAki_TMT10x_P_F4 112.64 81.01 2959400 4447100 0 6045100 2315400 2631500 2787100 3014500 3667600 3546300 3886700 2755300 4155600 213000 6003100 2230500 2899900 2829700 3061500 3700400 3441600 3742600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2959400 4447100 0 6045100 2315400 2631500 2787100 3014500 3667600 3546300 3886700 2755300 4155600 213000 6003100 2230500 2899900 2829700 3061500 3700400 3441600 3742600 1 1 0 1 1 1 1 1 1 1 1 183920000 0 183920000 16856 1219 15482 85390;85391;85392;85393 103277;103278;103279;103280 103278 4 SEGALELADVSNELPGLK Unmodified 1840.9418 0.941823 1552 Q08J23;Q08J23-2;Q08J23-3 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 3.4 1.02 1 2 1 1 3 2 77.21 77.146 3 2.512E-07 25535 20211116_3431_TMUAki_TMT10x_P_F4 101.67 83.073 21086000 34692000 93564 32385000 21532000 34341000 23830000 22321000 22213000 23500000 26285000 19632000 32363000 1619300 33230000 20695000 34594000 24001000 23337000 22813000 22903000 25230000 4 4 3 4 4 4 4 4 4 4 4 15206000 25313000 93564 22682000 14197000 27389000 17794000 15314000 15341000 15972000 18796000 14159000 23610000 1333800 23395000 13709000 27340000 17785000 16199000 15837000 15572000 18025000 3 3 3 3 3 3 3 3 3 3 3 5880000 9379300 0 9703300 7335000 6952700 6036200 7007300 6871600 7528200 7489000 5473100 8753100 285550 9834900 6986100 7253800 6216600 7137400 6976000 7331000 7205200 1 1 0 1 1 1 1 1 1 1 1 2816500000 2249300000 567240000 16857 1552 15483 85394;85395;85396;85397;85398 103281;103282;103283;103284;103285 103283 5 SEGFDTYR Unmodified 973.41412 0.4141249 635 P12004 PCNA Proliferating cell nuclear antigen yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.535 1 5 1 2 5 30.867 30.777 2 0.00043225 9284 20211116_3429_TMUAki_TMT10x_P_F2 147.52 123.55 4895300 8078300 28965 8962800 10962000 6547900 5649900 5169500 5221300 4362400 7080100 4557700 7541200 455740 9044900 10376000 6788500 5995400 5301400 5396500 4293800 6772300 4 4 2 4 4 4 4 4 4 4 4 2444400 3873100 0 4318500 8035200 4474400 2863100 2580100 2386700 2285400 3378000 2275400 3615700 219910 4376400 7570600 4506000 3159900 2710000 2484000 2244100 3228000 1 1 0 1 1 1 1 1 1 1 1 2450900 4205200 28965 4644300 2927200 2073500 2786700 2589400 2834700 2077000 3702000 2282300 3925500 235830 4668500 2805000 2282500 2835500 2591400 2912500 2049600 3544400 3 3 2 3 3 3 3 3 3 3 3 216770000 101150000 115610000 16858 635 15484 85399;85400;85401;85402;85403;85404;85405 103286;103287;103288;103289;103290;103291;103292 103287 7 SEGVVAVLLTK Unmodified 1114.6598 0.6597749 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 7.14 0.639 1 4 2 4 3 70.942 71.137 2;3 3.193E-14 23981 20211116_3435_TMUAki_TMT10x_P_F7 182.28 115.49 53995000 90999000 86015 88943000 55913000 71923000 54510000 56170000 52640000 55146000 64142000 50275000 84904000 4484000 90628000 53575000 73966000 55308000 57874000 54042000 53901000 61519000 7 7 4 7 7 7 7 7 7 7 7 24133000 39780000 563.81 38940000 28267000 46344000 27223000 26450000 24176000 25947000 29704000 22470000 37115000 1959700 39895000 27071000 46309000 27574000 27881000 24924000 25362000 28483000 4 4 1 4 4 4 4 4 4 4 4 29862000 51219000 85451 50004000 27645000 25579000 27288000 29721000 28464000 29199000 34437000 27805000 47788000 2524400 50733000 26504000 27657000 27734000 29993000 29118000 28539000 33036000 3 3 3 3 3 3 3 3 3 3 3 6967900000 3816900000 3151100000 16859 1092 15485 85406;85407;85408;85409;85410;85411;85412 103293;103294;103295;103296;103297;103298;103299;103300 103294 8 SEGVVAVLLTKK Unmodified 1242.7547 0.75473792 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 1 By MS/MS By MS/MS 2 1 1 1 1 1 64.677 64.448 3 0.0012829 23067 20211116_3441_TMUAki_TMT10x_S_F3 68.277 46.72 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16860 1092 15486 85413;85414 103301;103302 103302 2 SEHPGLSIGDTAK Unmodified 1310.6466 0.64664404 817 P26583 HMGB2 High mobility group protein B2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.25 0.829 1 1 2 2 2 35.23 35.211 3 0.00011312 11121 20211116_3441_TMUAki_TMT10x_S_F3 89.507 73.282 2938900 4240800 7749.6 5891000 6612100 5515200 3458500 3050100 3571800 3124800 3757900 2736500 3963200 298740 5887600 6261000 5586300 3676500 3227700 3635400 3048700 3619300 4 4 2 4 4 4 4 4 4 4 4 2019900 2780900 6859.7 4045300 5759900 4776800 2541500 2157300 2527300 2198400 2484200 1880800 2599600 224890 4048500 5442300 4762300 2745800 2326800 2570200 2145400 2397700 2 2 1 2 2 2 2 2 2 2 2 919000 1459800 889.88 1845600 852190 738390 917020 892750 1044500 926370 1273700 855670 1363600 73850 1839100 818660 823990 930730 900900 1065200 903360 1221600 2 2 1 2 2 2 2 2 2 2 2 227240000 176670000 50563000 16861 817 15487 85415;85416;85417;85418 103303;103304;103305;103306 103305 4 SEHPPLCGR Unmodified 1051.4869 0.48691269 1798 Q15393;Q15393-3 SF3B3 Splicing factor 3B subunit 3 yes no 0 0 0 0 By MS/MS 3 0 1 1 26.397 26.104 3 0.00804 7563 20211116_3441_TMUAki_TMT10x_S_F3 61.679 37.344 82375 119980 1330.2 102800 86007 95418 90683 73647 91172 78581 94136 76709 111890 8120.1 105970 82665 97171 91754 76125 92836 76543 90718 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 82375 119980 1330.2 102800 86007 95418 90683 73647 91172 78581 94136 76709 111890 8120.1 105970 82665 97171 91754 76125 92836 76543 90718 1 1 1 1 1 1 1 1 1 1 1 2437900 0 2437900 16862 1798 15488 85419 103307 103307 1 SEIDLFNIR Unmodified 1105.5768 0.57677356 564 P08758 ANXA5 Annexin A5 yes yes 0 0 0 0 By MS/MS By MS/MS 3.8 0.748 2 2 1 3 2 66.32 66.111 2 3.3297E-05 21219 20211116_3433_TMUAki_TMT10x_P_F5 121.53 83.401 12266000 21077000 0 19983000 15907000 23374000 15220000 13963000 14852000 15367000 16667000 11420000 19663000 992270 20514000 15230000 23391000 15462000 14714000 15190000 14950000 16022000 3 3 0 3 3 3 3 3 3 3 3 8760600 15235000 0 14056000 12283000 20176000 12120000 10312000 10955000 11496000 12104000 8156700 14212000 741180 14515000 11771000 19955000 12266000 11018000 11237000 11179000 11641000 2 2 0 2 2 2 2 2 2 2 2 3505600 5842100 0 5926900 3623600 3198000 3100100 3651300 3897100 3871200 4562900 3263700 5451600 251090 5999700 3458700 3436400 3196600 3696100 3953300 3771700 4381100 1 1 0 1 1 1 1 1 1 1 1 1274000000 819460000 454500000 16863 564 15489 85420;85421;85422;85423;85424 103308;103309;103310;103311 103310 4 SEIDLFNIRK Unmodified 1233.6717 0.67173657 564 P08758 ANXA5 Annexin A5 yes yes 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 57.646 57.987 3 2.2398E-06 19043 20211116_3446_TMUAki_TMT10x_S_F7 144.55 89.438 28142000 45101000 142860 48575000 41519000 49572000 31558000 40956000 39931000 35845000 38854000 26204000 42097000 2617700 49324000 39567000 50246000 32791000 41923000 40218000 35219000 37514000 5 5 4 5 5 5 5 5 5 5 5 17156000 27432000 92073 29451000 29631000 39498000 22144000 25202000 24537000 22164000 22433000 15975000 25604000 1647000 30052000 28227000 39297000 22927000 26254000 24783000 21772000 21705000 3 3 2 3 3 3 3 3 3 3 3 10986000 17670000 50791 19124000 11888000 10074000 9414100 15755000 15394000 13681000 16421000 10229000 16493000 970780 19272000 11340000 10948000 9863600 15670000 15435000 13447000 15809000 2 2 2 2 2 2 2 2 2 2 2 2598100000 1525700000 1072500000 16864 564 15490 85425;85426;85427;85428 103312;103313;103314;103315;103316 103316 5 SEIDLLNIR Unmodified 1071.5924 0.59242362 548 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 By MS/MS 3 0 1 1 62.322 61.887 2 0.070876 22024 20211116_3441_TMUAki_TMT10x_S_F3 51.415 20.845 3313900 6351000 42620 5606900 4043800 3987800 3788200 5562600 4573600 4637900 5100900 3085800 5923300 324680 5748300 3873500 4197800 3880200 5548500 4637200 4567700 4904400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3313900 6351000 42620 5606900 4043800 3987800 3788200 5562600 4573600 4637900 5100900 3085800 5923300 324680 5748300 3873500 4197800 3880200 5548500 4637200 4567700 4904400 1 1 1 1 1 1 1 1 1 1 1 173480000 0 173480000 16865 548 15491 85429 103317 103317 1 SEIDLLNIRR Unmodified 1227.6935 0.69353465 548 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 1 By MS/MS 6 0 1 1 48.85 49.007 3 8.983E-09 13401 20211116_3445_TMUAki_TMT10x_S_F6 172.27 110.92 2742800 4852100 16240 5570900 3001100 2374500 2084300 4222100 4177800 3629800 4200700 2554000 4530200 245960 5584700 2855500 2657700 2226900 4181800 4159400 3569500 4051600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2742800 4852100 16240 5570900 3001100 2374500 2084300 4222100 4177800 3629800 4200700 2554000 4530200 245960 5584700 2855500 2657700 2226900 4181800 4159400 3569500 4051600 2 2 1 2 2 2 2 2 2 2 2 400730000 0 400730000 16866 548 15492 85430 103318;103319 103318 2 SEIEYYAMLAK Oxidation (M) 1332.6272 0.62715415 1378 P62888 RPL30 60S ribosomal protein L30 yes yes 0 0 1 0 By MS/MS 5 0 1 1 64.28 64.337 3 0.0019137 19407 20211116_3444_TMUAki_TMT10x_S_F5 67.776 45.903 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16867 1378 15493 85431 103320 103320 1850 1 SEIEYYAMLAK Unmodified 1316.6322 0.63223953 1378 P62888 RPL30 60S ribosomal protein L30 yes yes 0 0 0 0 By MS/MS 6 0 1 1 70.808 70.718 2 6.2348E-14 22350 20211116_3445_TMUAki_TMT10x_S_F6 145.72 118.83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16868 1378 15493 85432 103321 103321 1 SEIIPMFSNLASDEQDSVR Oxidation (M) 2152.9947 0.99466321 869 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 1 0 By MS/MS By MS/MS 3.4 1.02 1 2 1 1 2 3 68.544 68.194 3 2.0537E-08 22919 20211116_3429_TMUAki_TMT10x_P_F2 105.79 95.505 25181000 43976000 609990 39616000 28353000 44259000 31094000 28070000 26941000 27703000 32902000 23451000 41018000 2678100 40792000 27290000 44437000 31268000 29345000 27801000 27071000 31555000 7 7 5 7 7 7 7 7 7 7 7 18719000 31942000 548160 29349000 20053000 36274000 23081000 20536000 20044000 20158000 23892000 17433000 29796000 2069700 30227000 19336000 36173000 23160000 21662000 20661000 19703000 22929000 5 5 4 5 5 5 5 5 5 5 5 6462000 12034000 61827 10267000 8299700 7984600 8012700 7533700 6896900 7545500 9010000 6017200 11222000 608390 10565000 7954000 8264800 8108100 7682800 7140200 7368900 8626200 2 2 1 2 2 2 2 2 2 2 2 1620100000 1168900000 451250000 16869 869 15494 85433;85434;85435;85436;85437 103322;103323;103324;103325;103326;103327;103328;103329;103330 103322 1042 9 SEISELRR Unmodified 988.53016 0.53015772 37 Q04695;P02533;CON__Q04695;CON__Q9QWL7;CON__P02533 KRT17;KRT14 Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 14 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 30.556 30.314 3 0.0012487 9176 20211116_3441_TMUAki_TMT10x_S_F3 112.41 34.219 + 2054300 2879600 22103 2348800 1792600 2522400 1354600 1346700 1480400 1468400 1980500 1912900 2685000 187250 2436200 1709100 2532600 1400800 1432200 1518300 1429100 1895000 2 2 2 2 2 2 2 2 2 2 2 1622000 2252100 20235 1762200 1332100 2029200 786690 1003000 1056700 1128800 1490800 1510400 2099600 149270 1836300 1264800 2027700 834850 1075300 1078600 1097200 1424600 1 1 1 1 1 1 1 1 1 1 1 432310 627510 1867.9 586560 460500 493230 567910 343700 423770 339670 489700 402540 585380 37977 599880 444360 504860 565980 356870 439760 331910 470360 1 1 1 1 1 1 1 1 1 1 1 77522000 23428000 54095000 16870 37 15495 85438;85439 103331 103331 1 SEISLLPSDIDRYK Unmodified 1634.8516 0.85155143 1028 P43304;P43304-2 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 0 0 0 1 By MS/MS 6 0 1 1 62.251 62.279 3 0.00040122 18487 20211116_3434_TMUAki_TMT10x_P_F6 71.529 42.174 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16871 1028 15496 85440 103332 103332 1 SELDMLDIR Unmodified 1090.5329 0.53285983 548 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 By MS/MS 3 0 1 1 62.262 61.988 2 0.082372 20975 20211116_3430_TMUAki_TMT10x_P_F3 58.596 27.224 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16872 548 15497 85441 103333 103333 1 SELDQLRQEAEQLK Acetyl (Protein N-term) 1727.869 0.86899241 1376 P62873;P62873-2 GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 yes no 1 0 0 1 By MS/MS By MS/MS 2.29 1.03 4 4 4 2 6 8 74.684 74.578 2;3 3.2999E-43 27077 20211116_3441_TMUAki_TMT10x_S_F3 129.89 56.389 87246000 145470000 442740 135540000 105390000 132950000 111670000 90564000 89611000 97902000 115050000 81234000 135700000 7346600 138940000 101200000 134650000 112260000 94438000 93032000 95314000 110190000 16 16 10 16 16 16 16 16 16 16 16 47531000 75673000 133090 73565000 45190000 81456000 56154000 48128000 47155000 52974000 61704000 44253000 70603000 3545100 75315000 43582000 81746000 56108000 50761000 48882000 51537000 59073000 6 6 3 6 6 6 6 6 6 6 6 39715000 69793000 309650 61979000 60199000 51495000 55513000 42435000 42456000 44928000 53343000 36980000 65095000 3801600 63624000 57619000 52903000 56150000 43677000 44150000 43776000 51121000 10 10 7 10 10 10 10 10 10 10 10 22758000000 11698000000 11059000000 16873 1376 15498 85442;85443;85444;85445;85446;85447;85448;85449;85450;85451;85452;85453;85454;85455 103334;103335;103336;103337;103338;103339;103340;103341;103342;103343;103344;103345;103346;103347;103348;103349 103347 16 SELEMAQEDLSMTQK Unmodified 1738.7754 0.7753513 1548 Q08378;Q08378-2 GOLGA3 Golgin subfamily A member 3 yes no 0 0 0 0 By MS/MS By MS/MS 2.8 1.17 1 1 1 2 4 1 46.523 46.528 3 0.10604 14171 20211116_3429_TMUAki_TMT10x_P_F2 23.481 4.0863 24601000 38180000 341330 54957000 62099000 58959000 34235000 40516000 46646000 32799000 39055000 22907000 35689000 2553800 54940000 58849000 59402000 36567000 41893000 46642000 32351000 37910000 8 8 5 8 8 8 8 8 8 8 8 19683000 29503000 285010 43533000 58758000 55961000 31518000 31538000 36611000 25751000 30556000 18327000 27582000 2221700 43605000 55658000 55694000 33552000 33125000 36808000 25388000 29664000 6 6 4 6 6 6 6 6 6 6 6 4918300 8677000 56319 11424000 3340700 2997900 2717200 8977500 10035000 7048800 8498900 4579900 8106800 332050 11334000 3191000 3708200 3015300 8768200 9834400 6963700 8246100 2 2 1 2 2 2 2 2 2 2 2 2255500000 1853400000 402110000 16874 1548 15499 85456;85457;85458;85459;85460 103350;103351 103350 2 SELEQLRQEAEQLR Acetyl (Protein N-term) 1769.8908 0.89079049 1377 P62879;Q9HAV0 GNB2;GNB4 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein subunit beta-4 yes no 1 0 0 1 By MS/MS By MS/MS 1.8 0.748 2 2 1 3 2 68.413 68.238 2 5.0102E-72 21732 20211116_3440_TMUAki_TMT10x_S_F2 143.24 95.147 6613300 11783000 23757 9583900 7942300 10438000 8144800 9369400 8990100 8937700 9046300 6157600 10987000 554850 9945300 7619800 10557000 8277200 9567200 9110800 8746800 8724900 5 5 1 5 5 5 5 5 5 5 5 2720300 4722600 0 3745800 3181000 5914900 3705500 4124500 3883800 3854000 3898600 2532700 4403000 210520 3922700 3061800 5851700 3736700 4275800 3943800 3775200 3760400 2 2 0 2 2 2 2 2 2 2 2 3893000 7060700 23757 5838100 4761400 4522900 4439300 5244900 5106200 5083700 5147800 3624900 6583800 344330 6022500 4557900 4705000 4540500 5291400 5167000 4971600 4964600 3 3 1 3 3 3 3 3 3 3 3 9461500000 4826300000 4635100000 16875 1377 15500 85461;85462;85463;85464;85465 103352;103353;103354;103355;103356;103357 103357 6 SELHIENLNMEADPGQYR Oxidation (M) 2130.964 0.96403178 939 P35613;P35613-2;P35613-4;P35613-3 BSG Basigin yes no 0 0 1 0 By MS/MS By MS/MS 3.12 1.45 1 2 2 2 1 4 4 45.906 45.886 3 7.0692E-07 15376 20211116_3441_TMUAki_TMT10x_S_F3 100.58 85.423 15664000 27773000 332710 30754000 23805000 31089000 16763000 24240000 25173000 21575000 22728000 14587000 25927000 1224500 31169000 22667000 31497000 17632000 24912000 25155000 21181000 22000000 17 17 11 17 17 17 17 17 17 17 17 9147100 16164000 243260 17832000 17916000 25008000 12187000 14900000 15295000 13165000 13162000 8518500 15089000 800420 18181000 17049000 24807000 12758000 15608000 15348000 12929000 12763000 9 9 6 9 9 9 9 9 9 9 9 6516500 11609000 89459 12922000 5888400 6080100 4575800 9340400 9878200 8410200 9566000 6068100 10837000 424060 12988000 5618000 6689300 4874200 9304300 9806200 8252200 9237600 8 8 5 8 8 8 8 8 8 8 8 4347900000 2994100000 1353800000 16876 939 15501 85466;85467;85468;85469;85470;85471;85472;85473 103358;103359;103360;103361;103362;103363;103364;103365;103366;103367;103368;103369;103370;103371;103372;103373;103374 103368 1199 17 SELHIENLNMEADPGQYR Unmodified 2114.9691 0.96911716 939 P35613;P35613-2;P35613-4;P35613-3 BSG Basigin yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 52.532 52.384 3 4.3865E-12 15783 20211116_3442_TMUAki_TMT10x_S_F4 127.22 117.16 2440600 4172700 43256 4976100 2374400 1992100 2138300 3051100 2999200 2745500 3385500 2272800 3896500 241730 4975100 2273300 2237300 2207900 3039500 3027200 2694000 3253900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2440600 4172700 43256 4976100 2374400 1992100 2138300 3051100 2999200 2745500 3385500 2272800 3896500 241730 4975100 2273300 2237300 2207900 3039500 3027200 2694000 3253900 2 2 2 2 2 2 2 2 2 2 2 678620000 0 678620000 16877 939 15501 85474;85475;85476 103375;103376;103377 103377 3 SELIQLVAVTQK Unmodified 1327.7711 0.77111627 3211 Q9UPT5;Q9UPT5-2;Q9UPT5-5;Q9UPT5-1;Q9UPT5-6 EXOC7 Exocyst complex component 7 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 73.101 73.038 3 0.00027663 23532 20211116_3436_TMUAki_TMT10x_P_F8 83.204 52.872 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16878 3211 15502 85477;85478 103378;103379 103378 2 SELLSQLQQHEEESR Unmodified 1811.865 0.86496967 2354 Q92665 MRPS31 28S ribosomal protein S31, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 48.223 48.147 3 1.371E-14 16363 20211116_3441_TMUAki_TMT10x_S_F3 152.94 139.81 4643000 7982900 79666 9193400 6962200 6812100 4811900 6627200 6413500 6119200 6713800 4323700 7453400 491670 9257700 6626400 7082500 5043000 6732200 6465200 5997200 6467300 4 4 4 4 4 4 4 4 4 4 4 1925500 3001600 12951 3475300 4295200 4494300 2578100 2679800 2577000 2398300 2835800 1792900 2802600 204890 3527200 4076100 4474900 2704800 2807700 2630800 2353900 2727600 2 2 2 2 2 2 2 2 2 2 2 2717600 4981300 66715 5718000 2667000 2317800 2233900 3947400 3836600 3720800 3878000 2530800 4650800 286770 5730500 2550400 2607600 2338200 3924500 3834400 3643300 3739700 2 2 2 2 2 2 2 2 2 2 2 420260000 146980000 273290000 16879 2354 15503 85479;85480;85481 103380;103381;103382;103383 103382 4 SELLVEQGR Unmodified 1029.5455 0.54547343 2370 Q92878;Q92878-2;Q92878-3 RAD50 DNA repair protein RAD50 yes no 0 0 0 0 By MS/MS By MS/MS 2.4 0.49 3 2 3 2 36.99 36.85 2 0.0026259 12338 20211116_3441_TMUAki_TMT10x_S_F3 82.749 49.026 965620 1621200 29509 1938000 1545800 1303200 1148800 1459900 1530000 1173700 1631500 899310 1514000 115680 1945200 1474000 1370200 1197800 1467800 1543400 1158100 1570700 3 3 3 3 3 3 3 3 3 3 3 318410 510400 10303 554730 795290 697440 442830 359580 374160 332480 475760 296550 476420 42679 564920 754330 694110 465480 381830 387250 325830 455810 2 2 2 2 2 2 2 2 2 2 2 647210 1110800 19206 1383200 750500 605720 705920 1100300 1155800 841220 1155700 602760 1037500 73004 1380200 719660 676140 732310 1086000 1156100 832260 1114900 1 1 1 1 1 1 1 1 1 1 1 43803000 5862900 37940000 16880 2370 15504 85482;85483;85484;85485;85486 103384;103385;103386;103387;103388;103389 103389 6 SELVAMLEEEELRK Oxidation (M) 1690.8448 0.8447515 984 P40616;P40616-2 ARL1 ADP-ribosylation factor-like protein 1 yes no 0 0 1 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 63.78 63.631 3 3.2295E-07 19550 20211116_3428_TMUAki_TMT10x_P_F1 119.69 108.42 21799000 35034000 236490 34416000 26863000 48655000 27054000 30685000 33252000 31225000 30830000 20298000 32688000 1995400 35367000 25770000 48285000 27624000 32122000 33471000 30474000 29816000 5 5 3 5 5 5 5 5 5 5 5 21799000 35034000 236490 34416000 26863000 48655000 27054000 30685000 33252000 31225000 30830000 20298000 32688000 1995400 35367000 25770000 48285000 27624000 32122000 33471000 30474000 29816000 5 5 3 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1342000000 1342000000 0 16881 984 15505 85487;85488;85489 103390;103391;103392;103393;103394;103395 103390 1268 6 SELVAMLEEEELRK Unmodified 1674.8498 0.84983687 984 P40616;P40616-2 ARL1 ADP-ribosylation factor-like protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 71.561 71.432 3 1.7542E-24 24393 20211116_3429_TMUAki_TMT10x_P_F2 198.16 170.4 18036000 25510000 268990 27541000 16898000 23960000 21197000 9302800 8926300 12148000 18336000 16794000 23812000 1607600 27899000 16319000 24300000 20896000 10283000 9951800 11748000 17396000 3 3 1 3 3 3 3 3 3 3 3 18036000 25510000 268990 27541000 16898000 23960000 21197000 9302800 8926300 12148000 18336000 16794000 23812000 1607600 27899000 16319000 24300000 20896000 10283000 9951800 11748000 17396000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 765460000 765460000 0 16882 984 15505 85490;85491;85492;85493 103396;103397;103398;103399;103400 103398 5 SELVANNVTLPAGEQR Unmodified 1696.8744 0.87441214 1006;1007 P42166;P42167;P42167-2;P42167-3 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 0 0 By MS/MS By MS/MS 4.14 0.833 2 2 3 3 4 47.732 47.716 3 1.2579E-10 13476 20211116_3431_TMUAki_TMT10x_P_F4 125.98 92.089 3096700 5254700 85412 6464900 4487400 5071700 3439800 5127200 5253900 4562500 5090900 2883900 4907700 355810 6489000 4281500 5253900 3600100 5193300 5259800 4479200 4916100 3 3 3 3 3 3 3 3 3 3 3 1357100 1957300 21242 2454900 2881800 3297200 1944300 1904700 2081000 1715700 1867000 1263700 1828200 153660 2481900 2740900 3275700 2025400 2001200 2103500 1683500 1807600 1 1 1 1 1 1 1 1 1 1 1 1739600 3297400 64170 4010000 1605600 1774600 1495600 3222500 3172900 2846700 3223900 1620200 3079500 202150 4007100 1540600 1978200 1574700 3192100 3156300 2795700 3108400 2 2 2 2 2 2 2 2 2 2 2 980980000 746130000 234850000 16883 1006;1007 15506 85494;85495;85496;85497;85498;85499;85500 103401;103402;103403;103404;103405;103406 103401 6 SELVANNVTLPAGEQRK Unmodified 1824.9694 0.96937516 1006;1007 P42166;P42167;P42167-2;P42167-3 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 0 1 By MS/MS By MS/MS 5.6 0.49 2 3 2 3 43.039 43.163 3;4 1.5204E-15 10953 20211116_3445_TMUAki_TMT10x_S_F6 152.68 134.76 14571000 22158000 194190 30459000 28404000 27915000 16611000 27951000 32448000 21387000 25474000 13568000 20707000 1509200 30449000 26945000 28596000 17956000 28221000 32070000 21158000 24790000 7 7 3 7 7 7 7 7 7 7 7 6407600 9334300 100210 13091000 22254000 21034000 10128000 11993000 14401000 9432400 10673000 5966700 8723900 821210 13208000 21037000 20734000 11039000 12573000 14332000 9317600 10411000 2 2 1 2 2 2 2 2 2 2 2 8163400 12824000 93986 17368000 6150000 6881500 6483000 15958000 18047000 11954000 14801000 7601200 11983000 688020 17241000 5907800 7861300 6916500 15647000 17738000 11840000 14379000 5 5 2 5 5 5 5 5 5 5 5 1187300000 609820000 577460000 16884 1006;1007 15507 85501;85502;85503;85504;85505 103407;103408;103409;103410;103411;103412;103413 103411 7 SEMTPEELQKREEEEFNTGPLSVLTQSVK Unmodified 3334.6239 0.62386627 1354 P62316 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes yes 0 0 0 2 By MS/MS By MS/MS 4.23 1.67 3 2 2 2 3 1 6 7 76.286 76.252 4;5 1.4948E-93 24290 20211116_3444_TMUAki_TMT10x_S_F5 273.59 254.85 61630000 105660000 541630 90417000 72224000 65035000 81784000 35333000 30015000 38509000 65513000 57387000 98537000 5659900 92937000 69518000 67152000 80854000 37518000 34060000 37479000 62099000 13 13 10 13 13 13 13 13 13 13 13 25742000 42269000 198800 35347000 19572000 33433000 33499000 13936000 12281000 15271000 26113000 23970000 39416000 2217200 36520000 19128000 33739000 32594000 15193000 13913000 14860000 24762000 5 5 4 5 5 5 5 5 5 5 5 35889000 63393000 342830 55069000 52652000 31603000 48285000 21397000 17734000 23237000 39400000 33418000 59121000 3442700 56417000 50390000 33413000 48260000 22325000 20147000 22619000 37337000 8 8 6 8 8 8 8 8 8 8 8 11072000000 6361000000 4710600000 16885 1354 15508 85506;85507;85508;85509;85510;85511;85512;85513;85514;85515;85516;85517;85518 103414;103415;103416;103417;103418;103419;103420;103421;103422;103423;103424;103425;103426 103422 13 SEMTPEELQKREEEEFNTGPLSVLTQSVK Oxidation (M) 3350.6188 0.61878089 1354 P62316 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes yes 0 0 1 2 By MS/MS By MS/MS 3.17 1.07 1 2 4 4 1 5 7 72.109 71.972 4;5 2.02E-18 26101 20211116_3441_TMUAki_TMT10x_S_F3 134.03 122.61 56792000 102730000 845260 74593000 71311000 106680000 78965000 89380000 98576000 85240000 85841000 52884000 95755000 5520300 78565000 68608000 106310000 80304000 91625000 98975000 83420000 83202000 22 22 17 22 22 22 22 22 22 22 22 29673000 50713000 516460 37766000 25158000 65306000 38691000 45401000 50355000 43425000 42701000 27632000 47272000 2826500 39853000 24491000 64383000 38899000 47106000 50445000 42492000 41429000 10 10 8 10 10 10 10 10 10 10 10 27119000 52020000 328800 36828000 46153000 41372000 40274000 43979000 48222000 41815000 43140000 25252000 48483000 2693900 38711000 44117000 41926000 41405000 44519000 48529000 40928000 41773000 12 12 9 12 12 12 12 12 12 12 12 15131000000 6983000000 8148200000 16886 1354 15508 85519;85520;85521;85522;85523;85524;85525;85526;85527;85528;85529;85530 103427;103428;103429;103430;103431;103432;103433;103434;103435;103436;103437;103438;103439;103440;103441;103442;103443;103444;103445;103446;103447;103448 103442 1811 22 SENEEFVEVGR Unmodified 1293.5837 0.58370943 611 P10644;P10644-2 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed yes no 0 0 0 0 By MS/MS 1 0 1 1 40.089 39.95 2 5.8803E-11 11992 20211116_3439_TMUAki_TMT10x_S_F1 166.87 106.85 368960 604240 588.01 762240 394220 343190 348960 465220 495430 324190 606030 343550 564410 31491 760190 376900 378210 360860 462630 501530 322430 581190 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 368960 604240 588.01 762240 394220 343190 348960 465220 495430 324190 606030 343550 564410 31491 760190 376900 378210 360860 462630 501530 322430 581190 1 1 1 1 1 1 1 1 1 1 1 20739000 0 20739000 16887 611 15509 85531 103449 103449 1 SENGLEFTSSGSANTETTK Unmodified 1958.8705 0.87050855 760 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 43.799 43.655 3 3.0056E-06 14590 20211116_3441_TMUAki_TMT10x_S_F3 89.913 74.147 4213800 6161500 0 9293400 8327000 6209300 4910900 3334900 3173500 3144900 5472500 3923200 5761000 373760 9213500 7896300 6451300 5106200 3530000 3386100 3079300 5208000 3 3 0 3 3 3 3 3 3 3 3 2713700 3686900 0 5779500 7373100 5402200 4127800 1981200 1875100 2016700 3338500 2526600 3448100 268820 5742600 6986700 5449800 4286900 2188100 2058100 1968200 3175200 2 2 0 2 2 2 2 2 2 2 2 1500100 2474500 0 3514000 953860 807160 783120 1353600 1298400 1128200 2134000 1396600 2312900 104940 3471000 909550 1001500 819240 1341900 1328000 1111100 2032700 1 1 0 1 1 1 1 1 1 1 1 124750000 71945000 52804000 16888 760 15510 85532;85533 103450;103451;103452 103452 3 SENLGQGDKPDYFSSVATVVYLR Unmodified 2544.2496 0.24963234 828 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 72.789 72.879 3 8.3217E-78 25245 20211116_3446_TMUAki_TMT10x_S_F7 272.24 247.02 44580000 80106000 312660 69306000 48141000 82950000 59398000 46861000 47346000 54237000 59416000 41509000 74707000 3801700 71670000 46447000 82852000 59288000 49687000 49122000 52666000 56943000 8 8 5 8 8 8 8 8 8 8 8 32700000 59248000 247890 50702000 34162000 67230000 41328000 35621000 35205000 40962000 43829000 30447000 55253000 2821400 52575000 32942000 66760000 41356000 37972000 36389000 39785000 42013000 6 6 4 6 6 6 6 6 6 6 6 11881000 20858000 64768 18604000 13979000 15720000 18070000 11240000 12141000 13275000 15587000 11062000 19454000 980350 19095000 13504000 16092000 17932000 11715000 12733000 12881000 14930000 2 2 1 2 2 2 2 2 2 2 2 5437000000 2997900000 2439200000 16889 828 15511 85534;85535;85536;85537 103453;103454;103455;103456;103457;103458;103459;103460 103459 8 SEPHSLSSEALMR Oxidation (M) 1458.6773 0.67729224 2917 Q9NR28;Q9NR28-2 DIABLO Diablo homolog, mitochondrial yes no 0 0 1 0 By MS/MS 4 0 1 1 31.509 31.539 3 1.1569E-12 6975 20211116_3431_TMUAki_TMT10x_P_F4 131.06 110.94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16890 2917 15512 85538 103461 103461 3019 1 SEPIPESNDGPVK Unmodified 1367.6569 0.65687437 868 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 By MS/MS By MS/MS 2.33 1.11 2 1 2 1 1 5 39.61 39.484 2;3 1.785E-19 12848 20211116_3441_TMUAki_TMT10x_S_F3 190.35 173.22 2576500 4051800 16521 4443900 5715500 4792700 3462000 3579100 4316100 2918800 4327600 2399000 3782200 257070 4511000 5423600 4833700 3655900 3680500 4353900 2877900 4174300 4 4 2 4 4 4 4 4 4 4 4 1069700 1464500 0 1672900 3952300 3443800 1736600 1937900 2319500 1489300 1853900 995850 1367300 114210 1718400 3733000 3365200 1895400 2032900 2317700 1473000 1802800 1 1 0 1 1 1 1 1 1 1 1 1506900 2587300 16521 2770900 1763200 1348900 1725400 1641200 1996500 1429500 2473700 1403100 2414900 142860 2792600 1690600 1468500 1760500 1647600 2036200 1404900 2371500 3 3 2 3 3 3 3 3 3 3 3 384690000 79943000 304750000 16891 868 15513 85539;85540;85541;85542;85543;85544 103462;103463;103464;103465;103466 103465 5 SEPTQALELTEDDIKEDGIVPLR Unmodified 2567.2966 0.29664212 213 O43396 TXNL1 Thioredoxin-like protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 4 1 3 75.67 75.619 3;4 1.008E-27 26486 20211116_3439_TMUAki_TMT10x_S_F1 168.14 154.69 13885000 22759000 0 18748000 12815000 20673000 16886000 12269000 12501000 13948000 16152000 12927000 21222000 1005300 19438000 12382000 20753000 16780000 12949000 13039000 13553000 15468000 4 4 0 4 4 4 4 4 4 4 4 8693300 13858000 0 11517000 7543500 15100000 9892700 7395800 8077800 8611900 10124000 8093400 12922000 593370 11968000 7284900 14989000 9855600 7944800 8369800 8360700 9703300 2 2 0 2 2 2 2 2 2 2 2 5191700 8901400 0 7231000 5271600 5573500 6993800 4873300 4423500 5336400 6027500 4833800 8299700 411900 7470000 5096700 5764500 6924500 5004100 4669500 5192700 5764900 2 2 0 2 2 2 2 2 2 2 2 1797800000 657730000 1140100000 16892 213 15514 85545;85546;85547;85548 103467;103468;103469;103470;103471 103470 5 SEPVKEESSELEQPFAQDTSSVGPDR Unmodified 2847.3046 0.30464062 1804;1683 Q15424;Q15424-3;Q15424-2;Q15424-4;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 no no 0 0 0 1 By MS/MS By MS/MS 2.12 1.05 3 2 2 1 5 3 53.021 52.862 3;4 7.3211E-39 15216 20211116_3428_TMUAki_TMT10x_P_F1 188.23 178.64 15187000 26718000 91783 29486000 22930000 32788000 19461000 18799000 20115000 19399000 20878000 14141000 24941000 1352200 29934000 21899000 32884000 19942000 19838000 20462000 18921000 20116000 11 11 4 11 11 11 11 11 11 11 11 12884000 22209000 91783 24595000 20963000 30598000 17752000 15904000 16790000 16724000 17360000 11996000 20732000 1183100 25012000 20020000 30470000 18145000 16936000 17143000 16299000 16729000 9 9 4 9 9 9 9 9 9 9 9 2303500 4508700 0 4891000 1967500 2190600 1708800 2894900 3324700 2675000 3517500 2144600 4208600 169110 4922200 1878900 2414000 1796900 2901200 3318400 2621600 3387300 2 2 0 2 2 2 2 2 2 2 2 3592000000 2878700000 713250000 16893 1804;1683 15515 85549;85550;85551;85552;85553;85554;85555;85556 103472;103473;103474;103475;103476;103477;103478;103479;103480;103481;103482 103473 11 SEPVKEESSELEQPFAQDTSSVGPDRK Unmodified 2975.3996 0.39960364 1804;1683 Q15424;Q15424-3;Q15424-2;Q15424-4;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 no no 0 0 0 2 By MS/MS By MS/MS 3.33 0.943 2 3 3 1 5 4 49.589 49.558 4;5 2.1719E-92 14137 20211116_3440_TMUAki_TMT10x_S_F2 264.74 248.97 27177000 46175000 374630 60322000 33103000 39354000 24479000 30235000 34378000 31472000 35294000 25307000 43139000 2627600 60226000 31543000 41180000 25588000 31239000 34573000 30687000 34019000 12 12 10 12 12 12 12 12 12 12 12 13206000 21545000 160830 28428000 25518000 30768000 18068000 14203000 16641000 15176000 16648000 12297000 20129000 1368600 28550000 24288000 30827000 18673000 15306000 16992000 14782000 16060000 5 5 4 5 5 5 5 5 5 5 5 13972000 24631000 213800 31894000 7584300 8586500 6411300 16033000 17737000 16296000 18646000 13010000 23010000 1259000 31676000 7255000 10352000 6915200 15933000 17581000 15905000 17959000 7 7 6 7 7 7 7 7 7 7 7 5226900000 3488100000 1738900000 16894 1804;1683 15516 85557;85558;85559;85560;85561;85562;85563;85564;85565 103483;103484;103485;103486;103487;103488;103489;103490;103491;103492;103493;103494 103488 12 SEQDQAENEGEDSAVLMER Oxidation (M) 2151.8862 0.88623497 2588 Q99613;Q99613-2;B5ME19 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 0 0 1 0 By MS/MS By MS/MS 1 0 3 2 1 36.842 36.822 2;3 3.0696E-70 8717 20211116_3428_TMUAki_TMT10x_P_F1 279.68 245.93 694440 1211000 1433.7 1870600 2028200 1608800 894820 918350 1410200 616690 1305700 646570 1132500 34873 1857800 1916100 1639600 982870 959530 1408400 614720 1262800 4 4 1 4 4 4 4 4 4 4 4 379410 661980 0 1076200 1813300 1414700 710560 489720 785690 315220 721900 353260 619240 11792 1073700 1710800 1399500 780730 539370 793760 315050 698370 2 2 0 2 2 2 2 2 2 2 2 315040 549070 1433.7 794410 214950 194170 184260 428620 624500 301470 583780 293320 513250 23081 784130 205230 240100 202140 420160 614620 299670 564420 2 2 1 2 2 2 2 2 2 2 2 585240000 399950000 185280000 16895 2588 15517 85566;85567;85568 103495;103496;103497;103498 103496 2820 4 SEQDQAENEGEDSAVLMER Unmodified 2135.8913 0.89132035 2588 Q99613;Q99613-2;B5ME19 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 42.962 42.863 3 7.3201E-64 13171 20211116_3439_TMUAki_TMT10x_S_F1 267.6 257.01 1130200 1779200 6485.8 2724300 1733900 1461400 999670 1197300 1349700 1041600 1751400 1052200 1663700 87300 2693600 1643100 1560700 1063200 1226000 1372000 1023700 1677100 3 3 1 3 3 3 3 3 3 3 3 404960 649520 0 869750 1280900 1061100 664540 447040 450520 353770 577680 376900 606890 26308 874590 1211500 1055400 699680 482720 472200 349360 553330 1 1 0 1 1 1 1 1 1 1 1 725270 1129700 6485.8 1854600 452950 400300 335120 750280 899140 687870 1173800 675340 1056800 60992 1819000 431650 505370 363550 743300 899780 674380 1123800 2 2 1 2 2 2 2 2 2 2 2 317170000 245300000 71863000 16896 2588 15517 85569;85570 103499;103500;103501 103501 3 SEQEDEVLLVSSSR Unmodified 1576.758 0.75804498 0 Q9NZJ9;A0A024RBG1;Q9NZJ9-2 NUDT4 Diphosphoinositol polyphosphate phosphohydrolase 2 yes no 0 0 0 0 By MS/MS 1 0 1 1 49.519 49.257 2 8.5589E-27 15774 20211116_3439_TMUAki_TMT10x_S_F1 202.61 164.04 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16897 0 15518 85571 103502 103502 1 SEQEFQEQLESARR Unmodified 1735.8125 0.81254017 2544 Q96RQ3 MCCC1 Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 40.913 40.813 3 7.8E-10 10446 20211116_3440_TMUAki_TMT10x_S_F2 138.01 116.45 757980 1182200 5722.4 1555100 1383400 1263900 861080 1216300 1248700 952310 1125000 705790 1104500 75350 1555700 1313600 1304400 912740 1231100 1248900 940950 1089000 2 2 1 2 2 2 2 2 2 2 2 436350 628990 0 845680 1107500 1025500 639040 667250 694570 494800 612080 406280 587720 43993 850110 1050100 1025500 674420 691330 701250 490350 593010 1 1 0 1 1 1 1 1 1 1 1 321630 553180 5722.4 709380 275850 238390 222040 549030 554090 457510 512890 299510 516760 31357 705610 263490 278890 238310 539800 547690 450600 496040 1 1 1 1 1 1 1 1 1 1 1 145380000 110250000 35131000 16898 2544 15519 85572;85573 103503;103504 103504 2 SEQSSMSIEFGQESPEQSLAMDFSR 2 Oxidation (M) 2838.196 0.19601815 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 2 0 By MS/MS 1 0 1 1 67.623 67.623 3 1.8957E-05 21225 20211116_3428_TMUAki_TMT10x_P_F1 71.418 69.252 615150 961370 17066 942640 717800 1414300 804710 908480 708540 842470 856570 572890 896990 68343 970020 691480 1400400 808730 947230 730270 825520 821720 1 1 1 1 1 1 1 1 1 1 1 615150 961370 17066 942640 717800 1414300 804710 908480 708540 842470 856570 572890 896990 68343 970020 691480 1400400 808730 947230 730270 825520 821720 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 471970000 471970000 0 16899 1057 15520 85574 103505 103505 1377;1378 1 SEREDEVLLVSSSR Unmodified 1604.8006 0.8005785 2470 Q96G61;Q8NFP7 NUDT11;NUDT10 Diphosphoinositol polyphosphate phosphohydrolase 3-beta;Diphosphoinositol polyphosphate phosphohydrolase 3-alpha yes no 0 0 0 1 By MS/MS By MS/MS 2 0.816 2 2 2 2 4 38.73 38.622 3 1.7685E-61 9448 20211116_3428_TMUAki_TMT10x_P_F1 314.06 239.41 6854500 10940000 232480 14144000 11354000 12250000 7637000 9561100 8025000 7795700 9616700 6383900 10220000 840970 14174000 10806000 12536000 7952900 9803900 8203600 7686400 9227600 7 7 5 7 7 7 7 7 7 7 7 4080400 6410300 203570 8954400 9042200 10109000 5471100 6072300 4651100 4747700 5646700 3800700 5991000 591670 8972600 8592200 10136000 5710900 6338000 4802900 4691400 5416400 3 3 2 3 3 3 3 3 3 3 3 2774100 4529400 28916 5189100 2311400 2141200 2165900 3488700 3373900 3048000 3970000 2583200 4228800 249300 5201600 2214300 2399600 2242000 3465900 3400700 2995000 3811200 4 4 3 4 4 4 4 4 4 4 4 2289300000 1279300000 1010100000 16900 2470 15521 85575;85576;85577;85578;85579;85580 103506;103507;103508;103509;103510;103511;103512;103513 103506 8 SEREDEVLLVSSSRYPDR Unmodified 2136.0447 0.044724946 2470 Q96G61;Q8NFP7 NUDT11;NUDT10 Diphosphoinositol polyphosphate phosphohydrolase 3-beta;Diphosphoinositol polyphosphate phosphohydrolase 3-alpha yes no 0 0 0 2 By matching By MS/MS 2.33 0.471 2 1 1 2 40.597 40.43 4 0.00035278 10311 20211116_3440_TMUAki_TMT10x_S_F2 69.986 51.622 507730 827370 5312.7 824290 529380 419520 419450 749630 771470 670210 773230 472790 772010 47349 835070 505150 459760 442110 743140 769490 657840 745850 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 507730 827370 5312.7 824290 529380 419520 419450 749630 771470 670210 773230 472790 772010 47349 835070 505150 459760 442110 743140 769490 657840 745850 1 1 1 1 1 1 1 1 1 1 1 119130000 47773000 71361000 16901 2470 15522 85581;85582;85583 103514 103514 1 SERPPIFEIR Unmodified 1242.6721 0.67207093 1542 Q07954 LRP1 Prolow-density lipoprotein receptor-related protein 1;Low-density lipoprotein receptor-related protein 1 85 kDa subunit;Low-density lipoprotein receptor-related protein 1 515 kDa subunit;Low-density lipoprotein receptor-related protein 1 intracellular domain yes yes 0 0 0 1 By MS/MS 6 0 1 1 42.331 42.496 3 0.0017302 10757 20211116_3445_TMUAki_TMT10x_S_F6 74.698 46.592 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16902 1542 15523 85584 103515 103515 1 SESEEEVLLVSSSR Unmodified 1549.7471 0.74714594 455 O95989 NUDT3 Diphosphoinositol polyphosphate phosphohydrolase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 1.17 0.373 5 1 3 3 50.583 50.583 2;3 4.8145E-43 16265 20211116_3439_TMUAki_TMT10x_S_F1 249.29 215.41 2655700 4249500 0 5032000 4594500 7710600 3778900 4043100 4092000 3884800 3797400 2472500 3968200 223340 5118300 4383400 7607400 3885500 4291100 4138700 3800600 3672400 2 2 0 2 2 2 2 2 2 2 2 2655700 4249500 0 5032000 4594500 7710600 3778900 4043100 4092000 3884800 3797400 2472500 3968200 223340 5118300 4383400 7607400 3885500 4291100 4138700 3800600 3672400 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 206230000 206230000 0 16903 455 15524 85585;85586;85587;85588;85589;85590 103516;103517;103518;103519;103520;103521;103522 103520 7 SESEVEEAAAIIAQRPDNPR Unmodified 2181.0662 0.06618867 1858 Q16643;Q16643-3;Q16643-2 DBN1 Drebrin yes no 0 0 0 1 By MS/MS By MS/MS 2.73 1.05 2 2 4 3 5 6 59.082 58.884 3;4 2.9389E-80 20746 20211116_3441_TMUAki_TMT10x_S_F3 297.29 275.46 32763000 55450000 493490 54447000 39201000 54059000 40757000 42773000 40102000 41244000 44741000 30508000 51737000 3126500 55610000 37647000 54842000 41240000 44013000 40990000 40344000 43016000 12 12 9 12 12 12 12 12 12 12 12 16714000 27764000 241190 27283000 22541000 37218000 23454000 21199000 19619000 20366000 22906000 15563000 25905000 1561800 28015000 21642000 36942000 23624000 22337000 20243000 19924000 21995000 6 6 4 6 6 6 6 6 6 6 6 16049000 27685000 252300 27165000 16660000 16842000 17303000 21574000 20484000 20879000 21835000 14945000 25831000 1564700 27595000 16005000 17900000 17616000 21676000 20747000 20420000 21022000 6 6 5 6 6 6 6 6 6 6 6 6884600000 4145700000 2738900000 16904 1858 15525 85591;85592;85593;85594;85595;85596;85597;85598;85599;85600;85601 103523;103524;103525;103526;103527;103528;103529;103530;103531;103532;103533;103534 103533 12 SESGYGFNVR Unmodified 1114.5043 0.5043369 2515 Q96L92;Q96L92-3 SNX27 Sorting nexin-27 yes no 0 0 0 0 By MS/MS 4 0 1 1 37.013 37.146 2 0.0025203 9588 20211116_3442_TMUAki_TMT10x_S_F4 81.547 69.058 405300 706400 0 727430 412760 324020 497190 334070 443000 310920 556090 377320 659230 27581 734580 397500 355200 498230 338460 457060 304620 532940 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 405300 706400 0 727430 412760 324020 497190 334070 443000 310920 556090 377320 659230 27581 734580 397500 355200 498230 338460 457060 304620 532940 1 1 0 1 1 1 1 1 1 1 1 11620000 0 11620000 16905 2515 15526 85602 103535 103535 1 SESLIDASEDSQLEAAIR Unmodified 1932.9276 0.9276295 391 O94888 UBXN7 UBX domain-containing protein 7 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 3 2 1 65.492 65.254 3 3.4748E-42 22279 20211116_3439_TMUAki_TMT10x_S_F1 218.28 198.45 4578700 8177000 83252 6840500 5254800 4961200 5293500 5573400 4809700 5626300 6138600 4263900 7625000 466660 7044800 5044500 5183800 5352400 5637300 4961400 5492800 5880600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4578700 8177000 83252 6840500 5254800 4961200 5293500 5573400 4809700 5626300 6138600 4263900 7625000 466660 7044800 5044500 5183800 5352400 5637300 4961400 5492800 5880600 2 2 2 2 2 2 2 2 2 2 2 426940000 0 426940000 16906 391 15527 85603;85604;85605 103536;103537;103538;103539 103538 4 SESLVVCDVAEDLVEK Acetyl (Protein N-term) 1832.8714 0.87136018 1283 P60983 GMFB Glia maturation factor beta yes yes 1 0 0 0 By MS/MS By MS/MS 1.58 0.64 6 5 1 2 10 71.757 71.736 2;3 1.3333E-42 28698 20211116_3439_TMUAki_TMT10x_S_F1 130.01 119.63 23587000 40814000 46035 37362000 25936000 38786000 29063000 23956000 23190000 26064000 31037000 21961000 38071000 1429200 38380000 24940000 39091000 29135000 25168000 24128000 25369000 29698000 6 6 1 6 6 6 6 6 6 6 6 15587000 27659000 46035 24550000 14968000 29542000 17614000 16630000 15942000 17751000 21234000 14513000 25797000 752330 25339000 14413000 29498000 17676000 17594000 16479000 17291000 20319000 3 3 1 3 3 3 3 3 3 3 3 7999400 13155000 0 12812000 10968000 9243200 11449000 7325400 7248800 8312800 9803600 7448000 12274000 676900 13041000 10527000 9593400 11458000 7574300 7648900 8078000 9378100 3 3 0 3 3 3 3 3 3 3 3 5234400000 3460200000 1774100000 16907 1283 15528 85606;85607;85608;85609;85610;85611;85612;85613;85614;85615;85616;85617 103540;103541;103542;103543;103544;103545;103546;103547;103548;103549;103550 103543 11 SESNRFPLPFPFPSK Unmodified 1748.8886 0.88860564 2559 Q96SY0;Q96SY0-4;Q96SY0-3 VWA9 von Willebrand factor A domain-containing protein 9 yes no 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 70.856 70.803 3 0.0010209 22889 20211116_3431_TMUAki_TMT10x_P_F4 70.335 47.218 16728000 26390000 217690 24314000 17216000 27968000 19595000 18340000 17092000 18728000 20833000 15577000 24617000 1596500 25005000 16581000 28050000 19674000 19145000 17630000 18275000 19981000 3 3 3 3 3 3 3 3 3 3 3 11916000 18462000 151150 17246000 11173000 22250000 13733000 13113000 12369000 13004000 14487000 11096000 17222000 1118400 17755000 10787000 22153000 13754000 13791000 12718000 12705000 13910000 2 2 2 2 2 2 2 2 2 2 2 4811600 7928600 66539 7067800 6043100 5718200 5861200 5227100 4723000 5723700 6345500 4480600 7395000 478170 7250900 5793800 5897500 5919600 5354200 4912200 5569600 6071100 1 1 1 1 1 1 1 1 1 1 1 1077500000 421760000 655720000 16908 2559 15529 85618;85619 103551;103552;103553 103552 3 SESPKEPEQLR Unmodified 1298.6466 0.64664404 583 P09651;P09651-2;P09651-3 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes no 0 0 0 1 By MS/MS By MS/MS 2.67 1.49 2 1 1 1 1 4 2 30.807 30.73 3 1.6524E-14 6646 20211116_3431_TMUAki_TMT10x_P_F4 182.71 144.54 7158300 11710000 11457 10147000 12299000 10963000 7535600 6130900 7261500 5726400 9265100 6664600 10921000 612050 10475000 11669000 11010000 7884200 6465300 7470500 5609300 8875700 8 8 3 8 8 8 8 8 8 8 8 4442100 7101500 9840.3 6071200 9128800 8009000 4029400 3531000 4530800 3522200 5498800 4136000 6622600 429090 6295400 8624700 7938900 4369300 3815800 4621700 3440400 5274500 6 6 2 6 6 6 6 6 6 6 6 2716200 4608700 1616.7 4076100 3169700 2954200 3506200 2599900 2730700 2204100 3766400 2528700 4298500 182970 4179200 3044500 3070800 3514900 2649500 2848700 2169000 3601200 2 2 1 2 2 2 2 2 2 2 2 666410000 356710000 309700000 16909 583 15530 85620;85621;85622;85623;85624;85625 103554;103555;103556;103557;103558;103559;103560;103561 103557 8 SESPKEPEQLRK Unmodified 1426.7416 0.74160705 583 P09651;P09651-2;P09651-3 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes no 0 0 0 2 By MS/MS By MS/MS 4 0.707 1 2 1 3 1 31.272 31.21 3;4 1.0134E-11 6857 20211116_3431_TMUAki_TMT10x_P_F4 166.62 135.62 4877300 7519900 113820 6839600 6970400 6599500 4811800 2886500 3894300 3189800 5174500 4542100 7014300 538050 7022000 6636000 6654500 4965200 3131300 4047400 3102900 4952000 4 4 3 4 4 4 4 4 4 4 4 4693700 7197900 109380 6575600 6788700 6434600 4585600 2748400 3730900 3046500 4972900 4371100 6714100 518710 6750000 6460500 6481000 4740100 2989400 3877000 2963100 4758700 3 3 2 3 3 3 3 3 3 3 3 183680 321990 4436.6 264010 181660 164880 226160 138100 163430 143340 201580 171050 300240 19335 271950 175570 173480 225140 141920 170360 139780 193280 1 1 1 1 1 1 1 1 1 1 1 724430000 690040000 34395000 16910 583 15531 85626;85627;85628;85629 103562;103563;103564;103565 103562 4 SESVPPVTDWAWYK Unmodified 1663.7882 0.7882229 939 P35613;P35613-2;P35613-4;P35613-3 BSG Basigin yes no 0 0 0 0 By MS/MS By MS/MS 6.17 0.687 1 3 2 3 3 75.787 75.829 2;3 2.5506E-19 24501 20211116_3445_TMUAki_TMT10x_S_F6 150.46 122.25 13939000 23045000 8822.3 23524000 15654000 15321000 18678000 6272000 5422400 7532800 14568000 12978000 21505000 1062500 23842000 15078000 15911000 18378000 6871300 6420900 7304900 13770000 5 5 1 5 5 5 5 5 5 5 5 8091400 12963000 8822.3 13093000 9426700 11470000 11914000 4559500 3987800 5170500 8635400 7533800 12096000 679120 13324000 9100600 11630000 11709000 5002900 4568700 5024600 8186400 3 3 1 3 3 3 3 3 3 3 3 5847500 10083000 0 10431000 6227100 3850700 6764700 1712400 1434600 2362300 5932100 5443800 9409500 383390 10518000 5977400 4280700 6668600 1868400 1852300 2280400 5583300 2 2 0 2 2 2 2 2 2 2 2 2267000000 1320500000 946540000 16911 939 15532 85630;85631;85632;85633;85634;85635 103566;103567;103568;103569;103570;103571 103569 6 SETAPAAPAAAPPAEK Acetyl (Protein N-term) 1519.7518 0.75183739 695 P16403 HIST1H1C Histone H1.2 yes yes 1 0 0 0 By MS/MS By MS/MS 2.53 1.26 3 5 5 1 1 7 8 40.991 40.914 2;3 4.2777E-21 13421 20211116_3441_TMUAki_TMT10x_S_F3 105.17 19.325 11745000 19933000 212090 23284000 36238000 20417000 15642000 13646000 18030000 12716000 21758000 10937000 18612000 1433900 23474000 34237000 20824000 17017000 14189000 18371000 12458000 20874000 16 16 5 16 16 16 16 16 16 16 16 5831600 9145300 32420 10507000 30227000 15251000 8703700 6285700 8080800 5713300 10559000 5429500 8538600 793160 10693000 28440000 15042000 9934600 6826200 8336000 5603500 10109000 9 9 2 9 9 9 9 9 9 9 9 5913800 10787000 179670 12777000 6011500 5166500 6938600 7360600 9949600 7002900 11199000 5507500 10073000 640690 12780000 5797100 5782100 7082800 7362300 10035000 6854200 10765000 7 7 3 7 7 7 7 7 7 7 7 8870400000 5507900000 3362500000 16912 695 15533 85636;85637;85638;85639;85640;85641;85642;85643;85644;85645;85646;85647;85648;85649;85650 103572;103573;103574;103575;103576;103577;103578;103579;103580;103581;103582;103583;103584;103585;103586;103587;103588;103589 103586 18 SETAPAAPAAAPPAEK Unmodified 1477.7413 0.7412727 695 P16403 HIST1H1C Histone H1.2 yes yes 0 0 0 0 By MS/MS 3 0 1 1 36.083 35.841 3 0.088763 11347 20211116_3441_TMUAki_TMT10x_S_F3 32.746 4.8843 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16913 695 15533 85651 103590 103590 1 SETAPAAPAAAPPAEKAPVK Acetyl (Protein N-term) 1915.0051 0.005091963 695 P16403 HIST1H1C Histone H1.2 yes yes 1 0 0 1 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 42.9 43.035 3 2.6068E-06 11884 20211116_3442_TMUAki_TMT10x_S_F4 57.496 49.715 1352500 2292600 0 2716600 3622100 5394700 2287400 7842900 7466000 3199900 3528200 1259200 2140900 127720 2781500 3438400 5385600 2550300 7711600 7229100 3316500 3525400 3 3 0 3 3 3 3 3 3 3 3 985500 1637200 0 1963900 3297600 4984200 2012000 5551600 5272900 2230500 2491100 917510 1528900 103200 2025600 3128900 4904000 2209000 5516500 5122800 2315200 2489200 2 2 0 2 2 2 2 2 2 2 2 367000 655470 0 752630 324480 410540 275350 2291200 2193200 969440 1037100 341670 611990 24514 755830 309550 481600 341240 2195100 2106200 1001300 1036200 1 1 0 1 1 1 1 1 1 1 1 1218900000 957670000 261230000 16914 695 15534 85652;85653;85654 103591;103592;103593 103593 3 SETAPAAPAAPAPAEK Acetyl (Protein N-term) 1519.7518 0.75183739 606 P10412 HIST1H1E Histone H1.4 yes yes 1 0 0 0 By MS/MS By MS/MS 2.8 1.17 1 1 1 2 3 2 41.692 41.629 2 6.6097E-15 11338 20211116_3442_TMUAki_TMT10x_S_F4 94.191 10.574 2770400 4154700 0 5515600 7960400 5808500 3411300 3792700 5049400 3033600 4499000 2579100 3881900 250270 5535000 7515000 5854000 3748800 3935100 5045700 2994000 4357000 6 6 0 6 6 6 6 6 6 6 6 1871200 2606800 0 3553500 7053700 5026600 2506500 2496200 3293300 1946100 2723600 1742000 2436000 194430 3580300 6646900 4973000 2804600 2649200 3295700 1923300 2645000 3 3 0 3 3 3 3 3 3 3 3 899240 1547900 0 1962000 906700 781950 904790 1296400 1756200 1087400 1775400 837130 1445900 55839 1954700 868120 880950 944220 1285900 1750000 1070700 1712100 3 3 0 3 3 3 3 3 3 3 3 4771800000 3232400000 1539400000 16915 606 15535 85655;85656;85657;85658;85659 103594;103595;103596;103597;103598;103599 103599 6 SETAPAAPAAPAPAEKTPVK Acetyl (Protein N-term) 1945.0157 0.015656649 606 P10412 HIST1H1E Histone H1.4 yes yes 1 0 0 1 By MS/MS 4.5 0.5 1 1 2 43.138 43.312 3 6.4919E-07 12044 20211116_3442_TMUAki_TMT10x_S_F4 76.027 68.246 214490 429100 9549.8 477370 240920 318230 208950 2661800 1824100 719700 833640 199780 400580 27053 481200 230780 386670 263620 2529900 1749900 782910 834850 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 214490 429100 9549.8 477370 240920 318230 208950 2661800 1824100 719700 833640 199780 400580 27053 481200 230780 386670 263620 2529900 1749900 782910 834850 1 1 1 1 1 1 1 1 1 1 1 173770000 0 173770000 16916 606 15536 85660;85661 103600 103600 1 SETAPAETATPAPVEK Acetyl (Protein N-term) 1639.7941 0.79409613 693 P16401 HIST1H1B Histone H1.5 yes yes 1 0 0 0 By MS/MS By MS/MS 2 0.953 4 4 2 1 6 5 44.146 44.039 2;3 5.3008E-39 14676 20211116_3441_TMUAki_TMT10x_S_F3 153.95 134.16 8374200 14144000 92200 16793000 36624000 18695000 12928000 12740000 18768000 11436000 17490000 7797100 13208000 1080500 16973000 34520000 18794000 14533000 13215000 18793000 11222000 16912000 10 10 2 10 10 10 10 10 10 10 10 5047300 7766400 49004 9514100 32177000 15663000 8648500 7318800 11160000 6701300 10318000 4699500 7253400 791420 9674500 30261000 15389000 10081000 7843900 11214000 6570300 9979000 6 6 1 6 6 6 6 6 6 6 6 3326800 6377600 43196 7279100 4446700 3032500 4279900 5421100 7607700 4734200 7172600 3097600 5954400 289040 7298700 4259400 3405000 4453000 5370700 7578500 4652000 6932600 4 4 1 4 4 4 4 4 4 4 4 5819400000 4512400000 1307000000 16917 693 15537 85662;85663;85664;85665;85666;85667;85668;85669;85670;85671;85672 103601;103602;103603;103604;103605;103606;103607;103608;103609;103610;103611;103612 103612 12 SETAPAETATPAPVEK Unmodified 1597.7835 0.78353145 693 P16401 HIST1H1B Histone H1.5 yes yes 0 0 0 0 By matching By MS/MS 2.5 0.5 1 1 1 1 38.042 37.794 3 5.5846E-08 12120 20211116_3441_TMUAki_TMT10x_S_F3 117.37 102.5 385290 642790 0 733230 382430 345550 330500 638150 591020 474670 634490 358680 600130 23084 735830 364810 382510 346020 629170 591400 470320 610720 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 385290 642790 0 733230 382430 345550 330500 638150 591020 474670 634490 358680 600130 23084 735830 364810 382510 346020 629170 591400 470320 610720 1 1 0 1 1 1 1 1 1 1 1 66369000 38287000 28081000 16918 693 15537 85673;85674 103613 103613 1 SETAPLAPTIPAPAEK Acetyl (Protein N-term) 1633.8563 0.85630246 694 P16402 HIST1H1D Histone H1.3 yes yes 1 0 0 0 By MS/MS By MS/MS 2.57 0.495 3 4 4 3 64.776 64.427 2;3 3.174E-06 21973 20211116_3430_TMUAki_TMT10x_P_F3 64.121 46.302 11005000 18020000 214950 18421000 14485000 18999000 13778000 14318000 14416000 13955000 14477000 10248000 16816000 1161400 18773000 13884000 19214000 14033000 14783000 14640000 13644000 13964000 4 4 4 4 4 4 4 4 4 4 4 6101700 10131000 111010 10137000 9997300 14949000 9332200 8304000 8207400 8042800 8069600 5682100 9453500 663900 10413000 9575900 14783000 9466000 8770500 8394000 7865700 7788700 2 2 2 2 2 2 2 2 2 2 2 4902800 7888900 103930 8284000 4487800 4049100 4446100 6013700 6208300 5912200 6407800 4565800 7362700 497530 8359800 4308300 4430400 4566600 6012100 6245900 5778300 6175200 2 2 2 2 2 2 2 2 2 2 2 3524200000 1338800000 2185400000 16919 694 15538 85675;85676;85677;85678;85679;85680;85681 103614;103615;103616;103617;103618;103619 103617 6 SETDTSLIR Unmodified 1020.5088 0.50875357 982 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 0 By MS/MS By matching 2.5 0.5 1 1 1 1 34.681 34.45 2 0.0027995 9314 20211116_3429_TMUAki_TMT10x_P_F2 82.426 27.876 329510 658210 0 675730 1055000 861180 541780 464430 521320 397330 605050 306810 614240 37394 690890 998700 856950 575760 490210 534220 390820 581080 1 1 0 1 1 1 1 1 1 1 1 329510 658210 0 675730 1055000 861180 541780 464430 521320 397330 605050 306810 614240 37394 690890 998700 856950 575760 490210 534220 390820 581080 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27276000 20312000 6963500 16920 982 15539 85682;85683 103620 103620 1 SEVELAAALSDKR Unmodified 1387.7307 0.73070802 1505 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 1 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 52.388 52.545 3 4.4417E-23 15382 20211116_3431_TMUAki_TMT10x_P_F4 213.18 167.27 33813000 54416000 469410 56814000 50674000 54482000 40004000 45102000 44360000 42960000 44441000 31487000 50785000 3450800 57756000 48347000 55436000 41271000 46266000 44941000 42045000 42868000 4 4 3 4 4 4 4 4 4 4 4 17203000 26592000 165700 27373000 29445000 36342000 21352000 21901000 21527000 20475000 21452000 16019000 24816000 1752200 28004000 28040000 36145000 22087000 22953000 21890000 20055000 20697000 2 2 2 2 2 2 2 2 2 2 2 16610000 27824000 303710 29441000 21229000 18140000 18652000 23201000 22833000 22485000 22988000 15468000 25968000 1698700 29752000 20307000 19291000 19184000 23312000 23051000 21990000 22171000 2 2 1 2 2 2 2 2 2 2 2 3486200000 1677800000 1808400000 16921 1505 15540 85684;85685;85686;85687;85688 103621;103622;103623;103624;103625 103622 5 SEVQAMLGQSTEELR Oxidation (M) 1692.7989 0.79886394 48 CON__Q03247 yes yes 0 0 1 0 By MS/MS By MS/MS 2 0.707 1 2 1 3 1 44.049 44.059 3 0.00017393 13308 20211116_3430_TMUAki_TMT10x_P_F3 80.917 53.254 + 1654100 2632800 41617 3144500 2530600 2180800 1792400 1858100 1978200 1725300 2277800 1540400 2458600 188200 3157300 2410500 2273800 1862500 1901500 2015000 1690500 2188100 2 2 2 2 2 2 2 2 2 2 2 612830 966490 5178.1 1317800 1625500 1402800 911050 685510 810200 621240 860630 570650 903150 69817 1320800 1541000 1407700 958360 731260 830440 609380 828660 1 1 1 1 1 1 1 1 1 1 1 1041300 1666300 36439 1826700 905110 777960 881350 1172600 1168100 1104100 1417200 969790 1555500 118380 1836500 869470 866090 904110 1170300 1184600 1081100 1359400 1 1 1 1 1 1 1 1 1 1 1 233050000 158790000 74262000 16922 48 15541 85689;85690;85691;85692 103626;103627;103628 103627 23 3 SEVSSDEDIQFR Unmodified 1410.6263 0.62630252 992 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 41.503 41.375 2 1.3612E-56 12557 20211116_3439_TMUAki_TMT10x_S_F1 287.65 248.69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16923 992 15542 85693;85694;85695 103629;103630;103631 103630 3 SEYDSLLPDVYEWPESASSPPVITE Unmodified 2809.2858 0.28580266 780 P23368 ME2 NAD-dependent malic enzyme, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 82.289 82.278 3 0.0033274 29163 20211116_3439_TMUAki_TMT10x_S_F1 51.029 43.583 2398000 3966200 10767 3915400 2532700 3653900 2723300 2502800 2267200 2559900 3024200 2232700 3700700 195140 3994000 2432900 3712700 2738300 2604500 2353300 2497700 2893900 2 2 1 2 2 2 2 2 2 2 2 1173100 1784300 0 1902700 943870 2304800 1322700 1312900 1105400 1200000 1490100 1092100 1665400 78458 1938700 913530 2300900 1315100 1381500 1147800 1176700 1425500 1 1 0 1 1 1 1 1 1 1 1 1224900 2181900 10767 2012700 1588800 1349100 1400600 1190000 1161800 1359800 1534100 1140500 2035300 116680 2055300 1519400 1411800 1423200 1223000 1205600 1321100 1468400 1 1 1 1 1 1 1 1 1 1 1 231860000 106460000 125400000 16924 780 15543 85696;85697 103632;103633 103633 2 SEYSELDEDESQAPYDPNGKPER Unmodified 2654.1256 0.12561362 731 P19387 POLR2C DNA-directed RNA polymerase II subunit RPB3 yes yes 0 0 0 1 By MS/MS By matching 1 0 2 1 1 45.028 44.917 3 8.6266E-28 11971 20211116_3428_TMUAki_TMT10x_P_F1 167.89 162.19 809650 1251600 17791 2101700 2141600 2380500 1308100 1023200 1336500 1017400 1162800 754000 1171100 102360 2088200 2033600 2377400 1371300 1108700 1352200 993860 1127100 2 2 2 2 2 2 2 2 2 2 2 809650 1251600 17791 2101700 2141600 2380500 1308100 1023200 1336500 1017400 1162800 754000 1171100 102360 2088200 2033600 2377400 1371300 1108700 1352200 993860 1127100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 136860000 99095000 37766000 16925 731 15544 85698;85699 103634;103635 103634 2 SFADINLYR Unmodified 1097.5506 0.55055881 477 P01111 NRAS GTPase NRas yes yes 0 0 0 0 By MS/MS 7 0 1 1 57.317 58.05 2 0.0053217 18580 20211116_3435_TMUAki_TMT10x_P_F7 78.06 55.28 6602600 11776000 0 11410000 11821000 18008000 9806500 10350000 11701000 10578000 10183000 6147600 10987000 610650 11765000 11284000 17767000 10111000 10917000 11767000 10322000 9869700 1 1 0 1 1 1 1 1 1 1 1 6602600 11776000 0 11410000 11821000 18008000 9806500 10350000 11701000 10578000 10183000 6147600 10987000 610650 11765000 11284000 17767000 10111000 10917000 11767000 10322000 9869700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 442180000 442180000 0 16926 477 15545 85700 103636 103636 1 SFAGAVSPQEEEEFRR Unmodified 1837.8595 0.85949036 912 P33992 MCM5 DNA replication licensing factor MCM5 yes yes 0 0 0 1 By MS/MS By MS/MS 2.92 1.14 2 2 5 3 1 6 7 42.538 42.515 3;4 9.1739E-43 11239 20211116_3440_TMUAki_TMT10x_S_F2 227.4 192.65 15966000 27311000 237120 32007000 26134000 28849000 18097000 25926000 27119000 21475000 24778000 14868000 25502000 1472300 32273000 24870000 29518000 19056000 26374000 27111000 21157000 23975000 15 15 12 15 15 15 15 15 15 15 15 7584400 12394000 120750 14684000 19857000 21700000 11777000 11711000 12651000 9689900 11536000 7062700 11574000 907830 14923000 18844000 21449000 12396000 12350000 12792000 9546900 11163000 7 7 6 7 7 7 7 7 7 7 7 8381500 14917000 116370 17323000 6277000 7149300 6319600 14215000 14468000 11785000 13242000 7804800 13928000 564440 17350000 6026400 8069600 6660200 14024000 14319000 11610000 12812000 8 8 6 8 8 8 8 8 8 8 8 8114800000 4558000000 3556900000 16927 912 15546 85701;85702;85703;85704;85705;85706;85707;85708;85709;85710;85711;85712;85713 103637;103638;103639;103640;103641;103642;103643;103644;103645;103646;103647;103648;103649;103650 103645 14 SFAVGTLAETIQGLGAASAQFVSR Unmodified 2380.2387 0.23867373 2289 Q8TEX9;Q8TEX9-2 IPO4 Importin-4 yes no 0 0 0 0 By MS/MS By MS/MS 3.88 0.781 3 3 2 4 4 81.537 81.523 3;4 9.848E-73 26440 20211116_3444_TMUAki_TMT10x_S_F5 242.16 226.39 2849700 4369600 33365 4436200 3065400 3582500 3549900 2893400 2803800 2920000 3792000 2653300 4077500 237190 4508200 2951300 3686800 3552300 2977400 2920100 2850800 3627400 4 4 2 4 4 4 4 4 4 4 4 953340 1207100 0 1232200 716550 1330500 836620 801580 791740 815600 1006800 887440 1126400 49254 1256800 688360 1337500 840950 842100 815050 795980 964520 1 1 0 1 1 1 1 1 1 1 1 1896300 3162500 33365 3204000 2348900 2252000 2713200 2091900 2012100 2104400 2785200 1765900 2951100 187940 3251400 2262900 2349300 2711400 2135300 2105100 2054800 2662800 3 3 2 3 3 3 3 3 3 3 3 2912200000 841240000 2071000000 16928 2289 15547 85714;85715;85716;85717;85718;85719;85720;85721 103651;103652;103653;103654;103655 103654 5 SFCPGGTDSVSPPPSVITQENLGR Unmodified 2501.1857 0.18565188 2748 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O yes yes 0 0 0 0 By MS/MS 5 0 1 1 60.637 60.804 3 0.11045 19058 20211116_3433_TMUAki_TMT10x_P_F5 19.926 8.4867 1583100 2832500 0 2771100 2497200 3794100 2240500 2290000 2049200 2052100 2155800 1473600 2642800 94672 2846700 2384700 3768300 2280100 2397100 2096900 2014000 2076300 1 1 0 1 1 1 1 1 1 1 1 1583100 2832500 0 2771100 2497200 3794100 2240500 2290000 2049200 2052100 2155800 1473600 2642800 94672 2846700 2384700 3768300 2280100 2397100 2096900 2014000 2076300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 484010000 484010000 0 16929 2748 15548 85722 103656 103656 1 SFCSMAGPNLIAIGSSESAQK Oxidation (M) 2170.0035 0.003453758 382 O94760;O94760-2 DDAH1 N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 yes no 0 0 1 0 By MS/MS By MS/MS 7 0 2 1 1 62.493 63.079 3 4.2757E-08 21177 20211116_3446_TMUAki_TMT10x_S_F7 99.508 86.212 3329900 6166900 83653 5936600 4440000 5973100 4567700 5746300 5432400 5212300 5023900 3101100 5753500 369580 6073100 4265500 6077700 4653300 5837900 5474200 5112600 4859100 2 2 2 2 2 2 2 2 2 2 2 1673400 3077400 37840 3032000 2438100 4252700 2829300 2922000 2886600 2842400 2507400 1558400 2871400 184710 3114600 2349900 4227100 2851200 3035700 2920700 2779400 2430500 1 1 1 1 1 1 1 1 1 1 1 1656600 3089400 45813 2904600 2001900 1720500 1738400 2824300 2545700 2369900 2516500 1542800 2882100 184870 2958600 1915700 1850600 1802100 2802300 2553500 2333300 2428500 1 1 1 1 1 1 1 1 1 1 1 1951900000 956110000 995750000 16930 382 15549 85723;85724 103657;103658 103658 294 2 SFCSMAGPNLIAIGSSESAQK Unmodified 2154.0085 0.0085391359 382 O94760;O94760-2 DDAH1 N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 4 2 2 70.243 70.324 3 1.9038E-12 21916 20211116_3447_TMUAki_TMT10x_S_F8 120.79 103.71 1942500 3410400 0 3331900 2145200 3582000 2666000 1768300 1517600 1892800 2387500 1808700 3182000 162800 3408400 2069900 3592900 2641500 1893100 1625000 1843500 2276200 1 1 0 1 1 1 1 1 1 1 1 1942500 3410400 0 3331900 2145200 3582000 2666000 1768300 1517600 1892800 2387500 1808700 3182000 162800 3408400 2069900 3592900 2641500 1893100 1625000 1843500 2276200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 764310000 764310000 0 16931 382 15549 85725;85726;85727;85728 103659;103660;103661;103662 103662 4 SFDFEIETK Unmodified 1114.5183 0.51825563 1550 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 0 0 By MS/MS By MS/MS 3 1.41 2 2 2 2 2 5 5 63.443 63.308 2 4.9943E-08 22534 20211116_3441_TMUAki_TMT10x_S_F3 214.6 112.6 128490000 206200000 696100 202440000 157400000 193480000 154300000 153430000 145390000 147630000 167600000 119640000 192390000 11272000 206650000 150860000 196760000 156400000 157850000 149090000 144420000 160990000 16 16 8 16 16 16 16 16 16 16 16 65406000 100570000 290970 97694000 75457000 123960000 77740000 76898000 71980000 73334000 81022000 60900000 93831000 5524300 100260000 72406000 123600000 78557000 80453000 73800000 71769000 77879000 8 8 3 8 8 8 8 8 8 8 8 63086000 105630000 405130 104750000 81944000 69526000 76557000 76535000 73408000 74294000 86581000 58741000 98560000 5748100 106390000 78453000 73159000 77839000 77394000 75286000 72652000 83114000 8 8 5 8 8 8 8 8 8 8 8 13149000000 6839300000 6309500000 16932 1550 15550 85729;85730;85731;85732;85733;85734;85735;85736;85737;85738 103663;103664;103665;103666;103667;103668;103669;103670;103671;103672;103673;103674;103675;103676;103677;103678 103673 16 SFDLLVK Unmodified 820.46945 0.46945494 2855 Q9HB71;Q9HB71-3 CACYBP Calcyclin-binding protein yes no 0 0 0 0 By MS/MS By MS/MS 6.71 1.03 1 2 2 2 3 4 63.597 63.805 2 0.0028214 19503 20211116_3445_TMUAki_TMT10x_S_F6 121.52 61.369 70603000 105850000 945960 124390000 94607000 95960000 75542000 74842000 75456000 72824000 88839000 65745000 98836000 6953300 125170000 90284000 99037000 77620000 77100000 77242000 71207000 85286000 6 6 5 6 6 6 6 6 6 6 6 33867000 49158000 542620 58034000 55757000 63331000 38157000 35724000 35736000 34900000 41566000 31537000 45903000 3620100 58656000 53053000 63570000 39550000 37690000 36668000 34119000 39916000 3 3 3 3 3 3 3 3 3 3 3 36737000 56689000 403340 66361000 38850000 32629000 37385000 39119000 39719000 37924000 47273000 34207000 52933000 3333200 66511000 37231000 35466000 38070000 39410000 40574000 37088000 45369000 3 3 2 3 3 3 3 3 3 3 3 5794900000 3050200000 2744700000 16933 2855 15551 85739;85740;85741;85742;85743;85744;85745 103679;103680;103681;103682;103683;103684;103685 103682 7 SFDVNKPGCEVDDLK Unmodified 1721.7931 0.79305028 993 P41091;Q2VIR3;Q2VIR3-2 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 0 0 0 1 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 52.302 52.456 3 1.8027E-09 14437 20211116_3434_TMUAki_TMT10x_P_F6 124.92 93.534 18425000 27006000 101950 46930000 34206000 30490000 19115000 20311000 21451000 17749000 25236000 17156000 25274000 1813900 46223000 32423000 31846000 20250000 21088000 21855000 17440000 24227000 6 6 4 6 6 6 6 6 6 6 6 12480000 18054000 83593 30939000 30426000 27449000 16166000 13746000 14549000 12333000 16685000 11621000 16895000 1337700 30601000 28819000 27871000 17094000 14626000 14948000 12104000 16029000 4 4 3 4 4 4 4 4 4 4 4 5944500 8951900 18360 15991000 3780300 3040800 2948700 6564900 6901700 5415600 8551300 5535000 8379400 476160 15622000 3604700 3975800 3156900 6462500 6906800 5336500 8198000 2 2 1 2 2 2 2 2 2 2 2 1317500000 886750000 430770000 16934 993 15552 85746;85747;85748;85749;85750 103686;103687;103688;103689;103690;103691 103689 6 SFDVNKPGCEVDDLKGGVAGGSILK Unmodified 2561.2796 0.27955226 993 P41091;Q2VIR3;Q2VIR3-2 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 0 0 0 2 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 62.699 62.923 4 1.9054E-29 20544 20211116_3435_TMUAki_TMT10x_P_F7 171.22 158.16 84662000 158440000 763980 113870000 119340000 147760000 101010000 138370000 128150000 130720000 125920000 78829000 147670000 7586300 119820000 113970000 148230000 104250000 140930000 129110000 127990000 121540000 9 9 7 9 9 9 9 9 9 9 9 27148000 50758000 213960 38199000 43097000 76629000 45684000 44463000 40805000 40254000 39340000 25279000 47315000 2669600 40431000 41401000 74971000 46053000 46704000 41674000 39488000 37995000 4 4 3 4 4 4 4 4 4 4 4 57513000 107680000 550020 75669000 76241000 71132000 55322000 93902000 87347000 90468000 86584000 53550000 100360000 4916600 79387000 72570000 73256000 58201000 94222000 87432000 88497000 83548000 5 5 4 5 5 5 5 5 5 5 5 19926000000 10550000000 9376500000 16935 993 15553 85751;85752;85753;85754;85755;85756 103692;103693;103694;103695;103696;103697;103698;103699;103700 103693 9 SFEALLADLTR Unmodified 1234.6558 0.65575216 159 O15075;O15075-2 DCLK1 Serine/threonine-protein kinase DCLK1 yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 80.148 80.157 2 0.00073096 28335 20211116_3446_TMUAki_TMT10x_S_F7 83.081 59.288 11125000 17916000 180240 16632000 13189000 13373000 13223000 9233100 8882700 9719500 13077000 10359000 16712000 1026200 17009000 12652000 13731000 13276000 9611100 9375400 9472500 12485000 3 3 2 3 3 3 3 3 3 3 3 2702200 4823100 16634 4211100 2557000 4752000 2926900 2471200 2297400 2564800 3345100 2516100 4498200 237500 4347300 2462100 4756400 2930000 2630400 2401900 2501000 3194400 1 1 1 1 1 1 1 1 1 1 1 8422900 13092000 163610 12421000 10632000 8620700 10296000 6761900 6585300 7154700 9731600 7843100 12214000 788720 12662000 10190000 8974800 10346000 6980600 6973400 6971500 9290300 2 2 1 2 2 2 2 2 2 2 2 1103300000 203490000 899820000 16936 159 15554 85757;85758;85759 103701;103702;103703 103703 3 SFEAPATINSASLHPEK Unmodified 1797.8897 0.88972785 3284 Q9Y3F4;Q9Y3F4-2 STRAP Serine-threonine kinase receptor-associated protein yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 48.511 48.607 3 7.3374E-17 12864 20211116_3434_TMUAki_TMT10x_P_F6 159.88 136.74 1355700 2432200 14975 3011200 3153900 4264500 2210900 2165500 1944000 2010600 2098900 1262400 2271700 151530 3049800 3001300 4220000 2283600 2303000 1994900 1970100 2019900 1 1 1 1 1 1 1 1 1 1 1 1355700 2432200 14975 3011200 3153900 4264500 2210900 2165500 1944000 2010600 2098900 1262400 2271700 151530 3049800 3001300 4220000 2283600 2303000 1994900 1970100 2019900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 526210000 526210000 0 16937 3284 15555 85760;85761 103704;103705 103704 2 SFEDPPNHAR Unmodified 1168.5261 0.52613497 811 P26358;P26358-2;P26358-3 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 27.844 27.584 3 0.00013786 8190 20211116_3441_TMUAki_TMT10x_S_F3 111.61 95.945 269070 401350 0 337080 292760 360680 256790 192140 237030 230450 277610 250500 374260 17856 348770 279500 362200 261740 205010 243440 223490 266550 2 2 0 2 2 2 2 2 2 2 2 152080 212790 0 188380 163290 234530 137120 104280 125100 119460 134410 141580 198460 9700.1 194590 155710 233150 140090 113050 128120 116050 129380 1 1 0 1 1 1 1 1 1 1 1 116990 188560 0 148690 129470 126160 119660 87857 111930 110990 143200 108920 175800 8155.8 154170 123780 129050 121650 91952 115320 107440 137170 1 1 0 1 1 1 1 1 1 1 1 6690400 2050300 4640100 16938 811 15556 85762;85763 103706;103707 103707 2 SFENSLGINVPR Unmodified 1331.6834 0.68336389 1868 Q16851;Q16851-2 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 0 0 0 0 By MS/MS By matching 7 0 2 1 1 56.367 56.996 2 2.1838E-09 18125 20211116_3435_TMUAki_TMT10x_P_F7 157.68 128.3 3301600 5562000 31579 5217600 4798800 7771500 4598100 4885600 4731900 4130100 4591200 3074300 5188600 324120 5385300 4598200 7694700 4678700 5090400 4803000 4064800 4433300 1 1 1 1 1 1 1 1 1 1 1 3301600 5562000 31579 5217600 4798800 7771500 4598100 4885600 4731900 4130100 4591200 3074300 5188600 324120 5385300 4598200 7694700 4678700 5090400 4803000 4064800 4433300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1445800000 676050000 769770000 16939 1868 15557 85764;85765 103708 103708 1 SFEVNLR Unmodified 863.45012 0.45011648 2084 Q7Z4W1 DCXR L-xylulose reductase yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 44.795 44.939 2 0.02711 12752 20211116_3442_TMUAki_TMT10x_S_F4 78.324 17.675 2734900 4316100 0 4846700 2652300 2149000 2677700 3389800 3228200 2860500 3855500 2546400 4029400 217040 4866600 2543200 2383500 2731800 3368000 3282300 2815500 3699900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2734900 4316100 0 4846700 2652300 2149000 2677700 3389800 3228200 2860500 3855500 2546400 4029400 217040 4866600 2543200 2383500 2731800 3368000 3282300 2815500 3699900 1 1 0 1 1 1 1 1 1 1 1 66908000 0 66908000 16940 2084 15558 85766;85767 103709;103710 103709 2 SFEWLSQMR Unmodified 1182.5492 0.5491786 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 46.07 46.19 3 0.10165 13150 20211116_3442_TMUAki_TMT10x_S_F4 28.727 0.98468 5384700 7589700 35394 9521900 6142200 6210400 4975800 4687300 4646200 4320000 6001800 5013600 7089200 456440 9528000 5860000 6496800 5098000 4831600 4789200 4234300 5747700 4 4 2 4 4 4 4 4 4 4 4 2639700 3793500 35394 4558700 4002100 4288000 2688100 2363000 2329400 2139000 3025200 2458000 3542600 270910 4592500 3806500 4341700 2784300 2493000 2410100 2098300 2896700 2 2 2 2 2 2 2 2 2 2 2 2745000 3796200 0 4963300 2140100 1922500 2287700 2324300 2316800 2181000 2976600 2555600 3546600 185520 4935500 2053500 2155100 2313700 2338600 2379100 2136000 2851000 2 2 0 2 2 2 2 2 2 2 2 1266600000 540660000 725920000 16941 1695 15559 85768;85769;85770;85771 103711 103711 1 SFFDNISCDDNRER Unmodified 1773.7377 0.73766066 2237 Q8ND56;Q8ND56-3;Q8ND56-2 LSM14A Protein LSM14 homolog A yes no 0 0 0 1 By MS/MS By MS/MS 3.71 1.03 1 2 2 2 4 3 46.339 46.341 3 2.2255E-29 14415 20211116_3430_TMUAki_TMT10x_P_F3 199.68 188.31 14089000 23320000 139480 28750000 27301000 27456000 17157000 20974000 22970000 18468000 21915000 13119000 21781000 1463200 28927000 25930000 27905000 18113000 21577000 23076000 18140000 21174000 8 8 6 8 8 8 8 8 8 8 8 8919200 14522000 88032 17930000 22800000 23235000 13463000 13321000 14635000 11225000 13577000 8305300 13563000 1008400 18130000 21632000 23121000 14180000 13981000 14800000 11049000 13130000 5 5 4 5 5 5 5 5 5 5 5 5169900 8798600 51450 10820000 4500900 4221100 3693900 7652900 8334700 7243200 8338100 4814000 8217600 454780 10797000 4297700 4784300 3932800 7595500 8276100 7091000 8043400 3 3 2 3 3 3 3 3 3 3 3 2024600000 1312000000 712590000 16942 2237 15560 85772;85773;85774;85775;85776;85777;85778 103712;103713;103714;103715;103716;103717;103718;103719 103712 8 SFFDNISSELK Unmodified 1285.619 0.6190323 2712 Q9BX40;Q9BX40-2 LSM14B Protein LSM14 homolog B yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 75.322 75.323 2 5.1032E-16 26268 20211116_3446_TMUAki_TMT10x_S_F7 211.64 142.22 21865000 37897000 89466 34540000 26754000 29640000 25216000 23317000 22995000 24206000 28341000 20358000 35349000 1839400 35401000 25611000 30355000 25589000 24053000 23680000 23604000 27174000 3 3 1 3 3 3 3 3 3 3 3 7003500 11943000 0 10112000 7880800 13216000 8552900 7031300 6784100 7995900 9267600 6520400 11137000 523910 10492000 7568800 13133000 8585700 7489900 7067100 7769500 8863200 1 1 0 1 1 1 1 1 1 1 1 14861000 25954000 89466 24428000 18873000 16425000 16663000 16286000 16211000 16210000 19073000 13837000 24212000 1315500 24909000 18043000 17223000 17003000 16563000 16613000 15834000 18311000 2 2 1 2 2 2 2 2 2 2 2 2186900000 770300000 1416600000 16943 2712 15561 85779;85780;85781 103720;103721;103722 103722 3 SFFHQHYLGGQEPTPSNIR Unmodified 2214.0606 0.060649782 1047 P46379;P46379-2;P46379-3;P46379-4;P46379-5 BAG6 Large proline-rich protein BAG6 yes no 0 0 0 0 By MS/MS By MS/MS 5 3.29 2 1 2 3 2 42.573 42.677 4 2.6978E-12 11050 20211116_3428_TMUAki_TMT10x_P_F1 128.94 114.78 2694300 4213400 17803 5270900 4042700 3725200 2443100 3424500 3378300 2865900 3453500 2508800 3935500 181320 5279300 3837200 3883600 2590800 3480300 3398600 2822000 3329100 4 4 3 4 4 4 4 4 4 4 4 1294900 1968100 16370 2404900 2821900 2642400 1455300 1493200 1333300 1150300 1445700 1205800 1838100 66469 2426100 2672400 2651400 1543900 1565900 1365800 1137600 1391200 2 2 1 2 2 2 2 2 2 2 2 1399400 2245300 1432.6 2865900 1220900 1082800 987850 1931300 2045000 1715500 2007700 1303000 2097400 114850 2853200 1164900 1232200 1046900 1914300 2032800 1684400 1938000 2 2 2 2 2 2 2 2 2 2 2 817130000 515000000 302130000 16944 1047 15562 85782;85783;85784;85785;85786 103723;103724;103725;103726 103723 4 SFFSEIISSISDVK Unmodified 1557.7926 0.79263957 1397 P63151;P63151-2;Q66LE6;Q00005;Q00005-2;Q00005-6;Q00005-3;Q00005-4;Q00005-5;Q00005-7 PPP2R2A;PPP2R2D;PPP2R2B Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform yes no 0 0 0 0 By MS/MS By MS/MS 5.83 2.51 1 2 2 3 4 7 5 81.915 81.92 2;3 5.253E-14 26561 20211116_3447_TMUAki_TMT10x_S_F8 146.79 122 8303100 13583000 50302 13069000 9155400 11454000 9989200 7908900 7362500 8758500 10067000 7730900 12672000 683190 13344000 8798500 11689000 10008000 8245600 7701000 8519000 9627600 9 9 4 9 9 9 9 9 9 9 9 3848200 6311800 34334 6063500 3813300 6661900 4354900 3671200 3679700 4287000 4739200 3583000 5888700 311830 6212200 3669500 6682600 4368100 3902000 3810600 4161500 4538900 4 4 3 4 4 4 4 4 4 4 4 4455000 7270900 15968 7005100 5342100 4792500 5634300 4237700 3682800 4471600 5327900 4148000 6783600 371370 7132000 5129000 5006300 5639400 4343600 3890400 4357500 5088700 5 5 1 5 5 5 5 5 5 5 5 1824700000 958490000 866210000 16945 1397 15563 85787;85788;85789;85790;85791;85792;85793;85794;85795;85796;85797;85798 103727;103728;103729;103730;103731;103732;103733;103734;103735 103734 9 SFFSFAK Unmodified 832.41194 0.41194006 2867 Q9HCJ6 VAT1L Synaptic vesicle membrane protein VAT-1 homolog-like yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 65.918 65.628 2 0.0042074 22470 20211116_3430_TMUAki_TMT10x_P_F3 114.6 76.364 4958000 7475600 0 7415700 6347700 10099000 6148100 5981800 5655400 5178900 6205100 4615900 6975300 366980 7609600 6077300 10030000 6231400 6265700 5794500 5091100 5968800 1 1 0 1 1 1 1 1 1 1 1 4958000 7475600 0 7415700 6347700 10099000 6148100 5981800 5655400 5178900 6205100 4615900 6975300 366980 7609600 6077300 10030000 6231400 6265700 5794500 5091100 5968800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 549860000 549860000 0 16946 2867 15564 85799;85800 103736;103737 103736 2 SFFSVESGTK Unmodified 1087.5186 0.51858998 1738 Q14966;Q14966-3;Q14966-4;Q14966-2;Q14966-6 ZNF638 Zinc finger protein 638 yes no 0 0 0 0 By MS/MS 6 0 1 1 54.114 54.208 2 0.067624 15167 20211116_3434_TMUAki_TMT10x_P_F6 59.645 35.615 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16947 1738 15565 85801 103738 103738 1 SFFTPGKPK Unmodified 1007.544 0.54401687 2945 Q9NTI5;Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 44.272 44.394 3 0.0024579 12181 20211116_3431_TMUAki_TMT10x_P_F4 73.067 48.144 3219400 5104700 60803 5535300 3122900 2490000 2789100 3624900 3561500 2918800 4092600 2998000 4764800 322230 5571000 2989700 2750000 2870400 3607100 3608200 2879800 3931500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3219400 5104700 60803 5535300 3122900 2490000 2789100 3624900 3561500 2918800 4092600 2998000 4764800 322230 5571000 2989700 2750000 2870400 3607100 3608200 2879800 3931500 1 1 1 1 1 1 1 1 1 1 1 234760000 50958000 183800000 16948 2945 15566 85802;85803;85804 103739;103740 103739 2 SFGGEVSWDK Unmodified 1110.4982 0.49818889 100 O00541;O00541-2 PES1 Pescadillo homolog yes no 0 0 0 0 By MS/MS 4 0 1 1 54.651 54.81 2 0.0023173 16342 20211116_3431_TMUAki_TMT10x_P_F4 79.974 49.316 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16949 100 15567 85805 103741 103741 1 SFGLGDSCARK Carbamidomethyl (C) 1253.5823 0.58226964 2532 Q96P56-3 yes yes 0 1 0 1 By MS/MS 8 0 1 1 46.125 46.262 2 0.0078621 12599 20211116_3436_TMUAki_TMT10x_P_F8 63.159 9.6896 445660 795310 0 869030 1035700 1211800 738250 759920 903050 670800 680570 414940 742390 44150 886470 985530 1203200 769490 792770 903590 658810 663410 1 1 0 1 1 1 1 1 1 1 1 445660 795310 0 869030 1035700 1211800 738250 759920 903050 670800 680570 414940 742390 44150 886470 985530 1203200 769490 792770 903590 658810 663410 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 218830000 218830000 0 16950 2532 15568 85806 103742 103742 24 1 SFILEEHMDK Oxidation (M) 1263.5805 0.58053831 1984 Q6NVY1;Q6NVY1-2 HIBCH 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 41.942 42.157 3 0.017233 12666 20211116_3430_TMUAki_TMT10x_P_F3 62.005 46.465 1007200 1597100 0 1830600 879790 875290 868610 1469200 1379400 1208600 1527300 937730 1491100 73567 1836700 842770 963960 897460 1456000 1386200 1191100 1468800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1007200 1597100 0 1830600 879790 875290 868610 1469200 1379400 1208600 1527300 937730 1491100 73567 1836700 842770 963960 897460 1456000 1386200 1191100 1468800 1 1 0 1 1 1 1 1 1 1 1 39013000 0 39013000 16951 1984 15569 85807;85808 103743;103744 103743 2539 2 SFITTDVNPYYDSFVR Unmodified 1922.905 0.90504357 3064 Q9P2J5;Q9P2J5-2 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 6.18 0.716 2 5 4 5 6 76.195 76.22 2;3 1.1702E-94 26624 20211116_3446_TMUAki_TMT10x_S_F7 354.5 328.38 42117000 71721000 142230 62184000 53560000 64664000 56048000 45610000 40611000 46962000 52429000 39215000 66888000 3543200 64149000 51412000 65294000 56244000 47375000 42409000 45810000 50210000 11 11 5 11 11 11 11 11 11 11 11 20266000 33548000 75550 29833000 22031000 42533000 26801000 23726000 21845000 24911000 25738000 18869000 31290000 1693400 30887000 21243000 42124000 26783000 25108000 22579000 24281000 24708000 7 7 4 7 7 7 7 7 7 7 7 21852000 38174000 66679 32351000 31530000 22131000 29247000 21883000 18765000 22051000 26691000 20346000 35599000 1849800 33262000 30168000 23170000 29461000 22267000 19831000 21530000 25502000 4 4 1 4 4 4 4 4 4 4 4 9163400000 4517200000 4646200000 16952 3064 15570 85809;85810;85811;85812;85813;85814;85815;85816;85817;85818;85819 103745;103746;103747;103748;103749;103750;103751;103752;103753;103754;103755;103756 103755 12 SFLDSGYR Unmodified 943.43995 0.43994572 717 P18206;P18206-2 VCL Vinculin yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 44.388 44.565 2 0.0099484 11304 20211116_3444_TMUAki_TMT10x_S_F5 82.529 68.533 2105200 3330900 35715 3519800 1927500 1717200 2072400 2584100 2717600 2378500 2816900 1960400 3108800 205330 3550400 1854000 1880000 2114500 2577400 2740000 2331400 2714300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2105200 3330900 35715 3519800 1927500 1717200 2072400 2584100 2717600 2378500 2816900 1960400 3108800 205330 3550400 1854000 1880000 2114500 2577400 2740000 2331400 2714300 1 1 1 1 1 1 1 1 1 1 1 111680000 0 111680000 16953 717 15571 85820;85821 103757 103757 1 SFLEDIRK Unmodified 1006.5447 0.54474515 1170 P52209;P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 1 By MS/MS By MS/MS 6 0.707 1 2 1 1 3 49.285 49.513 3 0.00031134 13216 20211116_3434_TMUAki_TMT10x_P_F6 138.4 81.218 15529000 23658000 62309 34239000 18476000 17411000 13330000 18054000 20632000 18003000 22760000 14459000 22115000 1336800 33931000 17587000 18790000 14016000 18322000 20746000 17585000 21890000 5 5 1 5 5 5 5 5 5 5 5 3607500 5415600 0 7938700 11556000 8728200 4695300 4034200 4848400 4147600 5062700 3358800 5062700 393420 7932400 10907000 8737500 5126100 4342000 4933300 4046000 4877200 1 1 0 1 1 1 1 1 1 1 1 11922000 18243000 62309 26301000 6919500 8682700 8634900 14019000 15784000 13855000 17697000 11101000 17053000 943370 25999000 6679500 10052000 8890400 13980000 15813000 13539000 17013000 4 4 1 4 4 4 4 4 4 4 4 1682300000 518490000 1163800000 16954 1170 15572 85822;85823;85824;85825 103758;103759;103760;103761;103762 103758 5 SFLEDTTPARDEK Unmodified 1507.7155 0.71545188 1887 Q3YEC7;Q3YEC7-2 RABL6 Rab-like protein 6 yes no 0 0 0 1 By MS/MS 3 0 1 1 40.508 40.562 3 0.0016377 11976 20211116_3430_TMUAki_TMT10x_P_F3 72.523 51.86 241500 326830 0 493900 693580 514400 318860 298060 283850 222840 337710 224840 305590 24452 492370 655500 517910 341940 311710 292210 220730 324110 1 1 0 1 1 1 1 1 1 1 1 241500 326830 0 493900 693580 514400 318860 298060 283850 222840 337710 224840 305590 24452 492370 655500 517910 341940 311710 292210 220730 324110 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10411000 10411000 0 16955 1887 15573 85826 103763 103763 1 SFLEEVLASGLHSR Unmodified 1543.7995 0.79945628 2934 Q9NRW7 VPS45 Vacuolar protein sorting-associated protein 45 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 74.908 75.064 3 0.0001837 25710 20211116_3435_TMUAki_TMT10x_P_F7 82.1 56.441 14390000 22611000 310770 20171000 11096000 24242000 14046000 11332000 10338000 11180000 14729000 13400000 21089000 1380100 20811000 10729000 24155000 13979000 12169000 10836000 10925000 14073000 3 3 2 3 3 3 3 3 3 3 3 14390000 22611000 310770 20171000 11096000 24242000 14046000 11332000 10338000 11180000 14729000 13400000 21089000 1380100 20811000 10729000 24155000 13979000 12169000 10836000 10925000 14073000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 766430000 766430000 0 16956 2934 15574 85827;85828 103764;103765;103766;103767 103764 4 SFLEFAEDVIQVPR Unmodified 1648.8461 0.84607213 1532 Q06787-8;Q06787-6;Q06787-5;Q06787;Q06787-7;Q06787-2;Q06787-4;Q06787-9;Q06787-3;Q06787-11;Q06787-10 FMR1 Fragile X mental retardation protein 1 yes no 0 0 0 0 By MS/MS 5 0 1 1 81.082 81.091 3 3.9697E-14 26253 20211116_3444_TMUAki_TMT10x_S_F5 134.68 116.09 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16957 1532 15575 85829 103768 103768 1 SFLKPGEK Unmodified 904.50182 0.5018177 2323 Q8WXF1;Q8WXF1-2 PSPC1 Paraspeckle component 1 yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 38.912 39.257 3 0.034106 9694 20211116_3436_TMUAki_TMT10x_P_F8 55.806 3.0902 9524600 14854000 84777 15563000 17260000 17075000 11418000 10284000 10169000 10210000 12407000 8868800 13863000 955190 15849000 16406000 17149000 11849000 10797000 10480000 9974900 11900000 4 4 3 4 4 4 4 4 4 4 4 7630500 11929000 62698 12601000 15203000 15333000 9204100 8250100 8081000 8083100 9787200 7105000 11133000 775300 12849000 14429000 15293000 9615000 8740600 8330700 7901200 9388500 3 3 2 3 3 3 3 3 3 3 3 1894100 2925000 22079 2962000 2056700 1741800 2214100 2033800 2088300 2127200 2620000 1763800 2729400 179890 3000900 1977400 1856200 2233700 2055900 2148900 2073700 2511000 1 1 1 1 1 1 1 1 1 1 1 328330000 217070000 111260000 16958 2323 15576 85830;85831;85832 103769;103770;103771 103769 3 SFLLDLLNATGK Unmodified 1290.7184 0.71835242 104 O00571;O00571-2 DDX3X ATP-dependent RNA helicase DDX3X yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 4 4 4 6 6 81.057 81.034 2;3 6.1737E-49 27493 20211116_3442_TMUAki_TMT10x_S_F4 313.04 264.28 116870000 183160000 160110 189340000 101590000 152870000 138210000 75148000 78010000 98508000 121270000 108810000 170930000 7946900 192180000 98235000 156240000 136410000 81027000 83531000 95246000 115640000 11 11 1 11 11 11 11 11 11 11 11 62021000 95492000 160110 99566000 54562000 94535000 63337000 39347000 40137000 52771000 63609000 57743000 89119000 4536000 101210000 52504000 95376000 63069000 43192000 42681000 50986000 60634000 5 5 1 5 5 5 5 5 5 5 5 54854000 87663000 0 89774000 47033000 58334000 74871000 35801000 37873000 45737000 57660000 51066000 81807000 3410800 90965000 45731000 60859000 73344000 37835000 40850000 44260000 55010000 6 6 0 6 6 6 6 6 6 6 6 16436000000 7582700000 8853600000 16959 104 15577 85833;85834;85835;85836;85837;85838;85839;85840;85841;85842;85843;85844 103772;103773;103774;103775;103776;103777;103778;103779;103780;103781;103782;103783 103783 12 SFLSQGQVLK Unmodified 1105.6132 0.61315906 1068 P48047 ATP5O ATP synthase subunit O, mitochondrial yes yes 0 0 0 0 By MS/MS 2 0 1 1 55.324 55.118 2 0.00059561 16300 20211116_3440_TMUAki_TMT10x_S_F2 103.01 8.2045 2335000 4263800 22347 4777700 1985600 2103700 1858400 3860900 3818900 3305500 3796100 2174200 3980500 209520 4797700 1902100 2347500 1952400 3820200 3798500 3251200 3662700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2335000 4263800 22347 4777700 1985600 2103700 1858400 3860900 3818900 3305500 3796100 2174200 3980500 209520 4797700 1902100 2347500 1952400 3820200 3798500 3251200 3662700 1 1 1 1 1 1 1 1 1 1 1 881750000 0 881750000 16960 1068 15578 85845 103784 103784 1 SFLTAEDCFELGK Unmodified 1515.6915 0.69154532 655 P13674;P13674-2;P13674-3 P4HA1 Prolyl 4-hydroxylase subunit alpha-1 yes no 0 0 0 0 By MS/MS 4 0 1 1 72.373 72.428 3 0.039291 23623 20211116_3431_TMUAki_TMT10x_P_F4 40.88 1.8471 6588000 9769200 93117 9005100 6322900 10935000 6427400 5800200 5224000 5554000 6951600 6134800 9112800 629260 9269500 6071000 10905000 6476900 6149000 5428500 5434500 6652500 1 1 1 1 1 1 1 1 1 1 1 6588000 9769200 93117 9005100 6322900 10935000 6427400 5800200 5224000 5554000 6951600 6134800 9112800 629260 9269500 6071000 10905000 6476900 6149000 5428500 5434500 6652500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 678200000 678200000 0 16961 655 15579 85846 103785 103785 1 SFLVASVLPGPDGNINSPTR Unmodified 2040.064 0.064003825 2076 Q7Z3K3;Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-6;Q7Z3K3-3 POGZ Pogo transposable element with ZNF domain yes no 0 0 0 0 By MS/MS By MS/MS 4.4 2.94 3 2 2 3 73.773 73.675 2;3 1.6214E-41 23974 20211116_3440_TMUAki_TMT10x_S_F2 212.87 197.34 10379000 18339000 274780 15393000 12234000 19198000 12743000 13925000 13114000 13523000 14778000 9665200 17101000 1084000 15968000 11756000 19204000 12911000 14412000 13384000 13224000 14204000 7 7 4 7 7 7 7 7 7 7 7 6271500 11346000 226410 9330000 6532900 14286000 7987100 8871900 8589300 8393300 9047900 5840600 10580000 681300 9734600 6310800 14127000 8044300 9279300 8728100 8217100 8714000 4 4 3 4 4 4 4 4 4 4 4 4107200 6992800 48368 6063000 5701000 4911600 4756300 5052800 4525000 5130000 5730200 3824500 6521500 402740 6233700 5445300 5077800 4866700 5132600 4656300 5007100 5490400 3 3 1 3 3 3 3 3 3 3 3 4227000000 1862500000 2364600000 16962 2076 15580 85847;85848;85849;85850;85851 103786;103787;103788;103789;103790;103791;103792 103791 7 SFMALSQDIQK Oxidation (M) 1282.6227 0.62273747 1709 Q14444;Q14444-2 CAPRIN1 Caprin-1 yes no 0 0 1 0 By MS/MS 6 0 1 1 54.878 54.965 3 0.0014844 15479 20211116_3434_TMUAki_TMT10x_P_F6 72.29 50.918 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16963 1709 15581 85852 103793 103793 2297 1 SFMESGGTVLSTNWSDVGK Unmodified 2000.915 0.91495633 3256 Q9Y2Z0;Q9Y2Z0-2 SUGT1 Suppressor of G2 allele of SKP1 homolog yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 74.54 74.717 3 9.5164E-31 26052 20211116_3446_TMUAki_TMT10x_S_F7 167.05 148.91 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16964 3256 15582 85853;85854 103794;103795 103795 2 SFPAAIEHTIQWAR Unmodified 1625.8314 0.83142511 5 A0AVT1;A0AVT1-2 UBA6 Ubiquitin-like modifier-activating enzyme 6 yes no 0 0 0 0 By MS/MS 1 0 1 1 63.42 63.155 3 7.1045E-20 21438 20211116_3439_TMUAki_TMT10x_S_F1 153.32 131.45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16965 5 15583 85855 103796 103796 1 SFPDFPTPGVVFR Unmodified 1464.7402 0.74015049 541 P07741;P07741-2 APRT Adenine phosphoribosyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 77.141 77.102 2 4.5914E-27 26564 20211116_3429_TMUAki_TMT10x_P_F2 238.01 213.24 39527000 65006000 140320 58041000 42655000 62390000 50323000 40432000 37951000 41643000 50199000 36802000 60631000 3195700 59768000 41084000 62797000 50261000 42253000 39585000 40621000 48046000 6 6 2 6 6 6 6 6 6 6 6 22278000 35395000 140320 32376000 19967000 39199000 26348000 22030000 19672000 22559000 27710000 20743000 33016000 1789100 33344000 19304000 39126000 26186000 23281000 20590000 22011000 26482000 3 3 2 3 3 3 3 3 3 3 3 17249000 29611000 0 25665000 22688000 23191000 23975000 18402000 18279000 19084000 22489000 16059000 27615000 1406500 26424000 21780000 23670000 24075000 18972000 18994000 18610000 21564000 3 3 0 3 3 3 3 3 3 3 3 7277400000 4316100000 2961400000 16966 541 15584 85856;85857;85858;85859;85860;85861 103797;103798;103799;103800;103801;103802 103798 6 SFPGFQAFCETQGDR Unmodified 1745.7468 0.74676879 1486 Q01780;Q01780-2 EXOSC10 Exosome component 10 yes no 0 0 0 0 By MS/MS 6 0 1 1 65.146 65.142 2 6.8357E-14 19668 20211116_3434_TMUAki_TMT10x_P_F6 126.95 101.56 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16967 1486 15585 85862 103803 103803 1 SFPKDDPSKPVHLTAFLGYK Unmodified 2246.1736 0.17355427 975 P39023 RPL3 60S ribosomal protein L3 yes yes 0 0 0 2 By MS/MS By MS/MS 4.25 0.829 1 1 2 2 2 59.692 59.692 5 1.2298E-06 21202 20211116_3441_TMUAki_TMT10x_S_F3 92.31 70.94 24435000 40610000 358760 41792000 27357000 34529000 22448000 23457000 24305000 28623000 24913000 22754000 37898000 2401100 42443000 26130000 35375000 23084000 24563000 24667000 27742000 24014000 4 4 4 4 4 4 4 4 4 4 4 7633700 11449000 193170 12463000 8055600 16254000 7958300 6347600 6808400 7268400 8157500 7109200 10687000 818820 12700000 7733400 16102000 8042000 6981300 7024600 7060800 7827500 1 1 1 1 1 1 1 1 1 1 1 16801000 29161000 165590 29329000 19301000 18275000 14489000 17110000 17497000 21355000 16755000 15645000 27211000 1582300 29743000 18396000 19273000 15042000 17582000 17642000 20681000 16186000 3 3 3 3 3 3 3 3 3 3 3 2901000000 1184700000 1716300000 16968 975 15586 85863;85864;85865;85866 103804;103805;103806;103807 103805 4 SFPLHFDENSFFAGDKK Unmodified 1984.9319 0.93192702 2484 Q96HE7 ERO1L ERO1-like protein alpha yes yes 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 66.5 66.708 4 1.8771E-21 20942 20211116_3436_TMUAki_TMT10x_P_F8 161.32 152.23 10936000 17488000 0 17280000 11790000 16557000 12317000 10439000 11232000 11615000 12853000 10182000 16317000 847160 17632000 11313000 16774000 12433000 10958000 11531000 11295000 12349000 2 2 0 2 2 2 2 2 2 2 2 4741400 7228100 0 6809400 5141800 9025900 5206600 4202700 4496800 4787900 5011600 4414400 6743000 363670 7009400 4929500 8949800 5255900 4534000 4624100 4652000 4818600 1 1 0 1 1 1 1 1 1 1 1 6194700 10260000 0 10471000 6647800 7531000 7110700 6236200 6734700 6827200 7841900 5767600 9574300 483490 10623000 6383500 7824300 7176800 6423600 6907100 6643500 7530500 1 1 0 1 1 1 1 1 1 1 1 1907300000 1054300000 853020000 16969 2484 15587 85867;85868;85869 103808;103809 103808 2 SFPPPGPAEGLLR Unmodified 1336.7139 0.71393574 1216 P54105 CLNS1A Methylosome subunit pICln yes yes 0 0 0 0 By MS/MS By MS/MS 6.75 0.595 4 7 1 4 8 60.719 61.03 2 5.429E-19 20036 20211116_3446_TMUAki_TMT10x_S_F7 189.17 140.66 44579000 75021000 585040 74689000 61840000 95680000 55695000 81810000 71181000 61391000 65426000 41510000 70001000 4206000 76532000 59158000 95866000 57294000 83267000 71533000 60798000 63292000 15 15 9 15 15 15 15 15 15 15 15 32881000 54360000 497170 55223000 48770000 83836000 44381000 65688000 56144000 47709000 49051000 30617000 50727000 3140100 56704000 46665000 83234000 45611000 67165000 56350000 47335000 47537000 7 7 3 7 7 7 7 7 7 7 7 11698000 20661000 87868 19466000 13070000 11844000 11314000 16122000 15038000 13682000 16375000 10893000 19274000 1065900 19829000 12493000 12632000 11683000 16103000 15183000 13463000 15755000 8 8 6 8 8 8 8 8 8 8 8 3796500000 2539700000 1256800000 16970 1216 15588 85870;85871;85872;85873;85874;85875;85876;85877;85878;85879;85880;85881 103810;103811;103812;103813;103814;103815;103816;103817;103818;103819;103820;103821;103822;103823;103824;103825;103826;103827;103828 103822 19 SFPVNSDVGVLK Unmodified 1260.6714 0.67140222 1072 P48444;P48444-2 ARCN1 Coatomer subunit delta yes no 0 0 0 0 By MS/MS 6 0 2 2 59.406 59.456 2;3 3.0721E-15 17296 20211116_3434_TMUAki_TMT10x_P_F6 164.04 127.34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16971 1072 15589 85882;85883 103829;103830 103829 2 SFQPDTGRIEVFR Unmodified 1550.7841 0.78414057 628 P11498;P11498-2 PC Pyruvate carboxylase, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 48.702 49.256 3 3.7937E-06 15019 20211116_3435_TMUAki_TMT10x_P_F7 108.66 74.775 7869200 12727000 44300 14253000 10207000 9263000 7120800 11280000 9914100 9187300 11183000 7327300 11882000 721500 14358000 9711900 9789700 7470700 11304000 10009000 9059000 10749000 3 3 2 3 3 3 3 3 3 3 3 2387100 3584300 0 4177400 4213800 5044100 2838800 3264300 2926600 2697100 3167700 2222600 3346700 218550 4232700 4005500 5045100 2954100 3391800 2982100 2657500 3048300 1 1 0 1 1 1 1 1 1 1 1 5482100 9142900 44300 10076000 5993400 4219000 4282000 8015300 6987500 6490300 8015400 5104700 8534800 502950 10126000 5706400 4744600 4516700 7912100 7026600 6401600 7700400 2 2 2 2 2 2 2 2 2 2 2 427790000 226080000 201720000 16972 628 15590 85884;85885 103831;103832;103833 103831 3 SFQQELDAR Unmodified 1092.52 0.51998696 2587 Q99598 TSNAX Translin-associated protein X yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 38.241 38.297 2 0.0096601 9862 20211116_3440_TMUAki_TMT10x_S_F2 70.552 39.939 374330 614420 9687.7 781140 647100 471320 373720 462800 551410 426250 571710 348610 573950 43883 780490 614190 499060 398870 469880 553910 417810 550880 2 2 2 2 2 2 2 2 2 2 2 112610 174740 6495.4 233270 415380 258990 144950 114500 159730 107920 166490 104900 163270 19630 234230 391880 259010 161630 123510 162090 105670 160400 1 1 1 1 1 1 1 1 1 1 1 261720 439680 3192.3 547870 231730 212320 228770 348290 391690 318330 405220 243710 410680 24253 546260 222310 240050 237240 346360 391830 312130 390480 1 1 1 1 1 1 1 1 1 1 1 30489000 9789300 20700000 16973 2587 15591 85886;85887 103834;103835 103835 2 SFRPGDIVLAK Unmodified 1201.6819 0.68190733 3268 Q9Y3B2 EXOSC1 Exosome complex component CSL4 yes yes 0 0 0 1 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 52.758 52.486 3 2.1137E-07 15265 20211116_3440_TMUAki_TMT10x_S_F2 109.84 86.24 6607800 10319000 57780 11221000 12145000 13710000 8329900 10437000 9946200 8898500 9942200 6152900 9631900 679230 11421000 11553000 13739000 8698900 10731000 10048000 8754100 9591000 3 3 3 3 3 3 3 3 3 3 3 4672600 7296200 34751 7753600 10313000 12092000 6713800 7345500 6843100 6238000 7057000 4350900 6809900 498780 7942500 9800500 11945000 7002300 7674800 6963600 6138000 6801000 2 2 2 2 2 2 2 2 2 2 2 1935200 3022500 23029 3467900 1831900 1617100 1616100 3092000 3103100 2660400 2885100 1802000 2822000 180450 3478600 1752500 1794700 1696600 3056400 3084100 2616100 2789900 1 1 1 1 1 1 1 1 1 1 1 755780000 474630000 281150000 16974 3268 15592 85888;85889;85890 103836;103837;103838;103839 103839 4 SFSEFGKLER Unmodified 1198.5982 0.59823728 211 O43390;O43390-2;O43390-3;O43390-4 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 1 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 47.102 47.374 3 1.452E-05 14837 20211116_3446_TMUAki_TMT10x_S_F7 136.81 117.54 36789000 60271000 282070 67515000 68114000 62857000 38104000 83930000 82204000 59367000 63313000 34255000 56266000 3577700 68295000 64562000 64796000 41585000 83536000 81028000 58993000 61661000 8 8 2 8 8 8 8 8 8 8 8 15241000 24433000 0 27134000 42387000 45874000 23487000 31887000 31134000 23947000 25071000 14190000 22809000 1595500 27771000 40165000 45263000 25049000 32888000 31124000 23715000 24373000 4 4 0 4 4 4 4 4 4 4 4 21548000 35837000 282070 40381000 25726000 16983000 14617000 52044000 51070000 35420000 38242000 20065000 33457000 1982200 40524000 24397000 19533000 16536000 50647000 49905000 35278000 37288000 4 4 2 4 4 4 4 4 4 4 4 2962200000 1648100000 1314100000 16975 211 15593 85891;85892;85893;85894;85895;85896 103840;103841;103842;103843;103844;103845;103846;103847 103847 8 SFSERFPEDGPELEEILTQLATADAR Unmodified 2920.409 0.40904611 3013 Q9NY33;Q9NY33-4;Q9NY33-2 DPP3 Dipeptidyl peptidase 3 yes no 0 0 0 1 By MS/MS By MS/MS 2 0.894 2 1 2 3 2 80.251 80.218 3 1.2141E-49 28308 20211116_3439_TMUAki_TMT10x_S_F1 214 199.98 7475600 12261000 79327 11834000 8544900 9670500 8909600 6259700 5884500 6852300 8733000 6960500 11440000 635400 12070000 8202400 9908500 8924700 6554300 6219900 6667900 8336300 4 4 3 4 4 4 4 4 4 4 4 3195800 5167100 60155 4946000 3132700 5283500 3448800 2803800 2633300 2814300 3882600 2976100 4820600 320130 5066400 3015300 5305900 3456500 2976200 2758900 2748100 3706800 2 2 2 2 2 2 2 2 2 2 2 4279800 7094200 19173 6887700 5412200 4387000 5460800 3455800 3251200 4038000 4850400 3984400 6618900 315260 7003800 5187100 4602600 5468200 3578100 3461000 3919800 4629500 2 2 1 2 2 2 2 2 2 2 2 3510600000 2509200000 1001300000 16976 3013 15594 85897;85898;85899;85900;85901 103848;103849;103850;103851 103850 4 SFSTALYGESDL Unmodified 1288.5823 0.58231244 235 O43707;O43707-2;O43707-3 ACTN4 Alpha-actinin-4 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 73.661 73.487 2 0.00027073 25085 20211116_3429_TMUAki_TMT10x_P_F2 93.267 78.749 10212000 16000000 91110 14183000 10118000 21316000 12430000 12155000 12832000 13986000 13215000 9508600 14922000 930200 14704000 9765000 21069000 12500000 12876000 13051000 13584000 12736000 4 4 4 4 4 4 4 4 4 4 4 10212000 16000000 91110 14183000 10118000 21316000 12430000 12155000 12832000 13986000 13215000 9508600 14922000 930200 14704000 9765000 21069000 12500000 12876000 13051000 13584000 12736000 4 4 4 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 731440000 731440000 0 16977 235 15595 85902;85903;85904;85905 103852;103853;103854;103855;103856;103857 103853 6 SFTASCPVSAFVPK Unmodified 1496.7334 0.73335055 2000 Q6P587;Q6P587-2;Q6P587-3 FAHD1 Acylpyruvase FAHD1, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 2 0 4 2 2 64.76 64.49 2;3 8.7657E-20 21532 20211116_3429_TMUAki_TMT10x_P_F2 178.84 143.62 15522000 25474000 217090 24185000 18990000 23271000 16352000 15795000 13029000 14703000 20298000 14453000 23765000 1481000 24750000 18152000 23595000 16622000 16403000 13658000 14404000 19356000 4 4 3 4 4 4 4 4 4 4 4 8194700 12819000 97786 12371000 9570500 15562000 9254400 7707100 6268400 7198800 10253000 7630400 11959000 733070 12699000 9170900 15480000 9311200 8217300 6649100 7051700 9767100 2 2 1 2 2 2 2 2 2 2 2 7327100 12655000 119310 11815000 9419800 7708900 7097600 8087400 6760800 7503900 10045000 6823100 11805000 747960 12051000 8981000 8115100 7310400 8186100 7009200 7352800 9588800 2 2 2 2 2 2 2 2 2 2 2 2338100000 1481800000 856340000 16978 2000 15596 85906;85907;85908;85909 103858;103859;103860;103861 103859 4 SFTFVVFK Unmodified 973.5273 0.52730417 1135 P50416;P50416-2 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 75.587 75.607 2 0.0024136 24930 20211116_3431_TMUAki_TMT10x_P_F4 109.86 73.667 7035300 12226000 25702 9919000 8789400 12081000 8223100 7539400 6704200 7289800 8382600 6550700 11399000 624810 10314000 8414500 12072000 8323600 7887200 6946400 7129900 8034400 2 2 1 2 2 2 2 2 2 2 2 3963400 6761300 25702 5054100 4622600 8628200 4675300 4434600 4003200 4318600 4683800 3690500 6302600 361780 5330000 4435200 8475200 4718800 4717000 4126100 4222500 4497300 1 1 1 1 1 1 1 1 1 1 1 3071900 5464200 0 4864900 4166800 3453100 3547800 3104700 2701000 2971200 3698700 2860200 5096400 263030 4984200 3979300 3597000 3604800 3170300 2820300 2907300 3537100 1 1 0 1 1 1 1 1 1 1 1 380610000 261370000 119240000 16979 1135 15597 85910;85911 103862;103863 103862 2 SFTVDIR Unmodified 836.43922 0.43921744 1467 Q00341;Q00341-2 HDLBP Vigilin yes no 0 0 0 0 By MS/MS 5 0 1 1 46.472 46.636 2 0.037489 12165 20211116_3444_TMUAki_TMT10x_S_F5 70.716 23.949 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16980 1467 15598 85912 103864 103864 1 SFVAYEELIK Acetyl (Protein N-term) 1239.6387 0.63870511 2464 Q96FX7 TRMT61A tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A yes yes 1 0 0 0 By MS/MS 1 0 1 1 80.555 80.555 2 7.3612E-05 26495 20211116_3428_TMUAki_TMT10x_P_F1 77.789 50.264 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16981 2464 15599 85913 103865 103865 1 SFVDAEVDVTR Unmodified 1236.5986 0.59863121 1990 Q6P1J9 CDC73 Parafibromin yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 50.912 50.601 2 2.1795E-14 16278 20211116_3430_TMUAki_TMT10x_P_F3 160.53 129.46 4053500 6514600 11909 6929800 5517500 6488300 4701000 5304200 4958500 5058700 5578200 3774200 6080400 361620 7033600 5270200 6610500 4819100 5445300 5055100 4950700 5361900 2 2 1 2 2 2 2 2 2 2 2 2071300 3169000 11909 3392400 3312200 4377800 2736200 2568200 2449800 2461200 2797200 1928700 2957800 200200 3459700 3162200 4358400 2796700 2699300 2517100 2408200 2687600 1 1 1 1 1 1 1 1 1 1 1 1982200 3345600 0 3537500 2205200 2110500 1964800 2736000 2508600 2597500 2780900 1845500 3122500 161420 3573900 2108100 2252100 2022400 2746100 2538000 2542600 2674200 1 1 0 1 1 1 1 1 1 1 1 338700000 268540000 70169000 16982 1990 15600 85914;85915;85916;85917 103866;103867;103868;103869 103867 4 SFVEFILEPLYK Unmodified 1483.7963 0.79626839 1757 Q15029;Q15029-2;Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 By MS/MS By matching 8 0 2 1 1 82.014 82.018 3 3.7497E-05 27220 20211116_3436_TMUAki_TMT10x_P_F8 99.215 73.686 468820 736100 0 658150 513070 894090 591020 595390 490250 845120 558780 436450 686570 31975 680460 493430 889570 592300 627900 505590 815100 536920 1 1 0 1 1 1 1 1 1 1 1 468820 736100 0 658150 513070 894090 591020 595390 490250 845120 558780 436450 686570 31975 680460 493430 889570 592300 627900 505590 815100 536920 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 93378000 51516000 41862000 16983 1757 15601 85918;85919 103870 103870 1 SFVLNLGK Unmodified 876.5069 0.50690308 572 P09382 LGALS1 Galectin-1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 63.224 62.78 2 0.0016434 22391 20211116_3441_TMUAki_TMT10x_S_F3 119.27 64.725 3562700 6290100 48171 5774200 4482600 4179700 3899600 7093300 6262200 5957700 5935200 3317600 5867400 353150 5903200 4286400 4421800 4059200 7031000 6255700 5865400 5735500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3562700 6290100 48171 5774200 4482600 4179700 3899600 7093300 6262200 5957700 5935200 3317600 5867400 353150 5903200 4286400 4421800 4059200 7031000 6255700 5865400 5735500 1 1 1 1 1 1 1 1 1 1 1 318980000 0 318980000 16984 572 15602 85920 103871 103871 1 SFVTPPQSHFVR Unmodified 1400.7201 0.72008375 1217 P54132 BLM Bloom syndrome protein yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 40.267 40.168 3 0.00073814 9989 20211116_3428_TMUAki_TMT10x_P_F1 75.739 50.08 1635800 2680400 34547 2721000 3085800 3140300 2152600 2577100 2776300 2201100 2611800 1523400 2501300 186660 2779300 2937400 3160600 2251600 2637400 2791200 2165200 2524600 2 2 1 2 2 2 2 2 2 2 2 1081900 1763800 34547 1824700 2542200 2729400 1692200 1654400 1726100 1450300 1743300 1007600 1646000 142350 1870700 2418300 2700500 1761900 1730200 1755100 1424900 1681200 1 1 1 1 1 1 1 1 1 1 1 553900 916610 0 896320 543650 410970 460470 922690 1050200 750820 868510 515730 855220 44309 908570 519090 460110 489680 907160 1036100 740370 843450 1 1 0 1 1 1 1 1 1 1 1 117270000 80302000 36970000 16985 1217 15603 85921;85922;85923 103872;103873;103874 103872 3 SFVYGSHLAR Unmodified 1135.5774 0.57744226 17 A6NFI3 ZNF316 Zinc finger protein 316 yes yes 0 0 0 0 By MS/MS 1 0 1 1 35.036 35.001 3 0.0065816 9972 20211116_3439_TMUAki_TMT10x_S_F1 62.166 42.404 453140 707370 2530.4 745010 470840 414160 486660 558420 614840 518280 657800 421940 660190 40175 752430 452010 445570 496780 559280 621410 507840 633230 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 453140 707370 2530.4 745010 470840 414160 486660 558420 614840 518280 657800 421940 660190 40175 752430 452010 445570 496780 559280 621410 507840 633230 1 1 1 1 1 1 1 1 1 1 1 26445000 0 26445000 16986 17 15604 85924 103875 103875 1 SFYPEEVSSMVLTK Unmodified 1615.7804 0.78036033 615 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 By MS/MS By MS/MS 6.32 1.45 2 3 6 6 12 9 25 13 62.777 62.785 2;3 3.7374E-38 24261 20211116_3445_TMUAki_TMT10x_S_F6 256.47 206.18 180500000 281130000 1682200 312960000 166500000 194640000 202450000 94611000 87185000 110310000 179050000 168060000 262450000 15273000 315250000 160590000 203340000 199900000 101710000 96999000 107090000 169880000 35 35 20 35 35 35 35 35 35 35 35 98611000 151780000 1020600 165610000 87913000 129170000 104810000 55823000 51544000 64383000 98411000 91820000 141680000 8456500 167420000 84748000 132190000 103780000 60715000 56431000 62527000 93482000 20 20 11 20 20 20 20 20 20 20 20 81884000 129360000 661670 147350000 78590000 65473000 97639000 38788000 35641000 45930000 80640000 76243000 120770000 6816100 147830000 75840000 71150000 96124000 40997000 40568000 44564000 76398000 15 15 9 15 15 15 15 15 15 15 15 43459000000 22429000000 21030000000 16987 615 15605 85925;85926;85927;85928;85929;85930;85931;85932;85933;85934;85935;85936;85937;85938;85939;85940;85941;85942;85943;85944;85945;85946;85947;85948;85949;85950;85951;85952;85953;85954;85955;85956;85957;85958;85959;85960;85961;85962 103876;103877;103878;103879;103880;103881;103882;103883;103884;103885;103886;103887;103888;103889;103890;103891;103892;103893;103894;103895;103896;103897;103898;103899;103900;103901;103902;103903;103904;103905;103906;103907;103908;103909;103910;103911;103912;103913;103914;103915;103916;103917;103918;103919;103920;103921;103922;103923 103914 48 SFYPEEVSSMVLTK Oxidation (M) 1631.7753 0.77527495 615 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 1 0 By MS/MS By MS/MS 5.79 1.19 9 8 8 17 28 14 45.995 46.114 2;3 5.0661E-10 20084 20211116_3445_TMUAki_TMT10x_S_F6 138.02 125.04 240960000 402660000 2818900 396880000 246260000 381940000 263360000 273720000 290360000 295160000 308570000 224370000 375700000 21786000 405070000 236670000 387580000 267080000 284410000 294860000 287380000 297100000 57 57 34 57 57 57 57 57 57 57 57 122420000 195590000 1535300 199270000 134880000 237170000 134190000 130880000 136950000 142930000 149940000 114000000 182520000 11070000 203590000 129360000 236890000 136240000 138790000 139660000 139100000 144240000 38 38 22 38 38 38 38 38 38 38 38 118530000 207070000 1283600 197610000 111380000 144770000 129160000 142850000 153410000 152220000 158630000 110370000 193180000 10716000 201480000 107310000 150700000 130840000 145610000 155200000 148280000 152860000 19 19 12 19 19 19 19 19 19 19 19 36281000000 18699000000 17581000000 16988 615 15605 85963;85964;85965;85966;85967;85968;85969;85970;85971;85972;85973;85974;85975;85976;85977;85978;85979;85980;85981;85982;85983;85984;85985;85986;85987;85988;85989;85990;85991;85992;85993;85994;85995;85996;85997;85998;85999;86000;86001;86002;86003;86004 103924;103925;103926;103927;103928;103929;103930;103931;103932;103933;103934;103935;103936;103937;103938;103939;103940;103941;103942;103943;103944;103945;103946;103947;103948;103949;103950;103951;103952;103953;103954;103955;103956;103957;103958;103959;103960;103961;103962;103963;103964;103965;103966;103967;103968;103969;103970;103971;103972;103973;103974;103975;103976;103977;103978;103979;103980;103981;103982;103983;103984;103985 103975 623 62 SFYSTEAVQAHMNDK Oxidation (M) 1742.757 0.75699912 2396 Q969S3 ZNF622 Zinc finger protein 622 yes yes 0 0 1 0 By MS/MS 5 0 1 1 37.097 37.259 3 0.0025021 8458 20211116_3444_TMUAki_TMT10x_S_F5 61.641 49.281 152890 268170 3680.8 351580 119780 114040 119890 292220 385240 263800 274090 142380 250540 15642 349230 115080 134840 129820 287260 376360 258810 267840 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 152890 268170 3680.8 351580 119780 114040 119890 292220 385240 263800 274090 142380 250540 15642 349230 115080 134840 129820 287260 376360 258810 267840 1 1 1 1 1 1 1 1 1 1 1 27791000 0 27791000 16989 2396 15606 86005 103986 103986 2725 1 SGAAFGVAPALPGQVTIR Unmodified 1710.9417 0.94170385 7 A1L020 MEX3A RNA-binding protein MEX3A yes yes 0 0 0 0 By MS/MS 2 0 1 1 64.11 63.813 3 0.051409 21244 20211116_3429_TMUAki_TMT10x_P_F2 39.212 22.581 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16990 7 15607 86006 103987 103987 1 SGAAVCEFFLK Unmodified 1227.5958 0.59579444 440 O95639;O95639-2;O95639-3 CPSF4 Cleavage and polyadenylation specificity factor subunit 4 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 67.147 67.677 2 5.1367E-07 23158 20211116_3446_TMUAki_TMT10x_S_F7 108.43 68.08 19316000 31207000 98330 29323000 22896000 37177000 23009000 20252000 17808000 20350000 23708000 17986000 29113000 1731300 30165000 21962000 37009000 23172000 21448000 18554000 19871000 22688000 3 3 2 3 3 3 3 3 3 3 3 19316000 31207000 98330 29323000 22896000 37177000 23009000 20252000 17808000 20350000 23708000 17986000 29113000 1731300 30165000 21962000 37009000 23172000 21448000 18554000 19871000 22688000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 481800000 481800000 0 16991 440 15608 86007;86008 103988;103989;103990;103991 103991 4 SGAEVEAGDAAER Unmodified 1260.5582 0.55822296 2163 Q8IY67-2;Q8IY67;Q8IY67-3 RAVER1 Ribonucleoprotein PTB-binding 1 yes no 0 0 0 0 By matching By MS/MS 1 0 2 1 1 28.811 28.851 2 2.829E-11 7476 20211116_3439_TMUAki_TMT10x_S_F1 144.7 126.47 60095 95543 0 76786 65200 55128 69713 44981 56135 49330 65728 55954 89081 0 79336 62630 57269 70056 46376 58042 47999 63108 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 60095 95543 0 76786 65200 55128 69713 44981 56135 49330 65728 55954 89081 0 79336 62630 57269 70056 46376 58042 47999 63108 1 1 0 1 1 1 1 1 1 1 1 6339400 2391300 3948100 16992 2163 15609 86009;86010 103992 103992 1 SGAFGHLFRPDNFIFGQSGAGNNWAK Unmodified 2794.3364 0.33643071 1640 Q13509;Q13509-2 TUBB3 Tubulin beta-3 chain yes no 0 0 0 1 By MS/MS By MS/MS 6.25 1.09 1 2 1 2 2 74.307 74.251 4 5.5122E-12 23526 20211116_3447_TMUAki_TMT10x_S_F8 108.77 95.183 97120000 160790000 459610 162250000 127320000 110760000 113280000 77331000 77576000 84516000 110930000 90428000 150040000 8491100 164650000 121730000 115260000 114540000 80527000 81666000 82247000 105980000 8 8 5 8 8 8 8 8 8 8 8 23190000 35473000 294880 38592000 22580000 39110000 25333000 18728000 17090000 20711000 23389000 21594000 33111000 2157200 39157000 21736000 39352000 25297000 20129000 17971000 20145000 22367000 4 4 3 4 4 4 4 4 4 4 4 73930000 125320000 164720 123660000 104740000 71652000 87951000 58603000 60485000 63806000 87539000 68834000 116930000 6333900 125490000 99995000 75909000 89241000 60398000 63695000 62102000 83608000 4 4 2 4 4 4 4 4 4 4 4 4684500000 2159700000 2524900000 16993 1640 15610 86011;86012;86013;86014 103993;103994;103995;103996;103997;103998;103999;104000 103999 8 SGALDVLQMK Acetyl (Protein N-term);Oxidation (M) 1118.5642 0.56415996 565 P08865 RPSA 40S ribosomal protein SA no no 1 0 1 0 By matching 4 0 1 1 66.317 66.143 2 1 NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 285050000 0 285050000 16994 565 15611 86015 534 0 SGALDVLQMKEEDVLK Acetyl (Protein N-term);Oxidation (M) 1831.9237 0.9237301 565 P08865 RPSA 40S ribosomal protein SA yes yes 1 0 1 1 By MS/MS By MS/MS 2.33 1.15 5 6 4 2 1 8 10 71.787 71.728 2;3 1.0034E-07 26330 20211116_3442_TMUAki_TMT10x_S_F4 61.265 40.602 100050000 168630000 578530 142230000 111860000 169170000 117750000 135450000 136820000 135370000 134300000 93150000 157260000 7794400 147370000 107360000 169920000 119720000 139420000 138270000 132210000 129630000 19 19 8 19 19 19 19 19 19 19 19 54992000 89288000 271930 74930000 49515000 111370000 60659000 71470000 73683000 73443000 72766000 51200000 83261000 4042900 77999000 47729000 110310000 61350000 74738000 74357000 71647000 70223000 10 10 2 10 10 10 10 10 10 10 10 45057000 79347000 306600 67304000 62343000 57802000 57090000 63982000 63140000 61928000 61533000 41950000 73994000 3751500 69370000 59630000 59610000 58370000 64679000 63912000 60567000 59408000 9 9 6 9 9 9 9 9 9 9 9 25749000000 14486000000 11262000000 16995 565 15612 86016;86017;86018;86019;86020;86021;86022;86023;86024;86025;86026;86027;86028;86029;86030;86031;86032;86033 104001;104002;104003;104004;104005;104006;104007;104008;104009;104010;104011;104012;104013;104014;104015;104016;104017;104018;104019;104020 104019 534 20 SGALDVLQMKEEDVLK Acetyl (Protein N-term) 1815.9288 0.92881548 565 P08865 RPSA 40S ribosomal protein SA yes yes 1 0 0 1 By MS/MS By MS/MS 2.71 1.32 4 4 4 3 2 8 9 78.555 78.518 2;3 1.0978E-35 27147 20211116_3429_TMUAki_TMT10x_P_F2 107.85 74.622 179570000 286700000 249350 290810000 190830000 173560000 203880000 72968000 52713000 89321000 175460000 167180000 267540000 13501000 294630000 183200000 181780000 201440000 79755000 64597000 86562000 165460000 15 15 4 15 15 15 15 15 15 15 15 94966000 142890000 52939 149950000 84383000 105380000 106570000 32747000 23760000 42587000 89222000 88420000 133360000 7284900 151800000 81439000 108470000 104370000 37255000 30118000 41187000 84043000 6 6 1 6 6 6 6 6 6 6 6 84601000 143810000 196410 140870000 106450000 68174000 97308000 40221000 28953000 46735000 86237000 78763000 134180000 6216100 142830000 101770000 73307000 97066000 42499000 34478000 45375000 81416000 9 9 3 9 9 9 9 9 9 9 9 21266000000 9705600000 11560000000 16996 565 15612 86034;86035;86036;86037;86038;86039;86040;86041;86042;86043;86044;86045;86046;86047;86048;86049;86050 104021;104022;104023;104024;104025;104026;104027;104028;104029;104030;104031;104032;104033;104034;104035;104036;104037 104024 17 SGALLACGIVNSGVR Unmodified 1472.7769 0.7769467 1609 Q13200;Q13200-3;Q13200-2 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS 1.62 0.484 3 5 4 4 55.035 54.868 2;3 2.6769E-33 16283 20211116_3440_TMUAki_TMT10x_S_F2 226.42 175.61 15029000 24431000 160880 24810000 19695000 23937000 16432000 16804000 14102000 15392000 18216000 13993000 22798000 1198300 25271000 18795000 24279000 16766000 17403000 14594000 15091000 17445000 7 7 4 7 7 7 7 7 7 7 7 9724200 14748000 117500 15192000 14561000 19487000 11664000 10743000 8742000 9601200 11118000 9053300 13763000 756340 15532000 13881000 19391000 11892000 11330000 9105700 9424100 10652000 4 4 3 4 4 4 4 4 4 4 4 5305100 9683600 43384 9618100 5134300 4450000 4767900 6060300 5359800 5791200 7097700 4939600 9035500 441950 9739300 4914100 4888300 4873800 6072400 5488500 5667100 6793100 3 3 1 3 3 3 3 3 3 3 3 3025800000 2435500000 590340000 16997 1609 15613 86051;86052;86053;86054;86055;86056;86057;86058 104038;104039;104040;104041;104042;104043;104044;104045;104046 104043 9 SGASAAPAASAAAALAPSATR Unmodified 1768.9068 0.9067749 2098 Q7Z7K6-3 CENPV Centromere protein V yes yes 0 0 0 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 1 3 45.206 45.407 3 8.802E-15 12319 20211116_3436_TMUAki_TMT10x_P_F8 139 116.77 6998900 11397000 49327 12225000 9267500 10411000 7275000 10387000 9866800 8845300 10487000 6516900 10638000 635650 12386000 8837500 10718000 7563700 10516000 9946400 8702300 10097000 7 7 2 7 7 7 7 7 7 7 7 2988800 4624600 49327 5006000 5431700 6976000 3827600 4362900 3884600 3684300 4112800 2783100 4316700 321490 5109400 5170400 6926400 3968100 4547400 3957500 3626200 3960400 3 3 2 3 3 3 3 3 3 3 3 4010200 6772300 0 7219000 3835800 3435300 3447400 6024200 5982200 5161000 6374300 3733700 6321000 314160 7276400 3667200 3791200 3595600 5968500 5988900 5076100 6136900 4 4 0 4 4 4 4 4 4 4 4 980530000 592430000 388100000 16998 2098 15614 86059;86060;86061;86062 104047;104048;104049;104050;104051;104052;104053;104054 104049 8 SGASVVAIR Unmodified 858.49232 0.49231565 1930 Q5SSJ5;Q5SSJ5-2;Q5SSJ5-3 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 0 By MS/MS 5 0 1 1 32.653 32.817 2 0.10657 6653 20211116_3444_TMUAki_TMT10x_S_F5 43.982 16.158 254390 440140 9493.4 423210 273510 256530 351450 227790 234410 221690 327870 236940 410630 30206 430450 264790 270970 348790 232870 246910 216760 313390 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 254390 440140 9493.4 423210 273510 256530 351450 227790 234410 221690 327870 236940 410630 30206 430450 264790 270970 348790 232870 246910 216760 313390 1 1 1 1 1 1 1 1 1 1 1 4434800 0 4434800 16999 1930 15615 86063 104055 104055 1 SGASVVAIRK Unmodified 986.58728 0.58727866 1930 Q5SSJ5;Q5SSJ5-2;Q5SSJ5-3 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 33.442 33.329 3 1.7883E-05 8849 20211116_3429_TMUAki_TMT10x_P_F2 136.02 112.95 3268800 5284300 546.58 5021500 4634900 5683000 4001800 3370800 3538700 3560000 4391200 3043500 4929800 277650 5151200 4427500 5696700 4078000 3549600 3650500 3469100 4209600 3 3 1 3 3 3 3 3 3 3 3 2373400 3892500 546.58 3676500 3727200 4834300 2957000 2432000 2612300 2620800 3155500 2209800 3631300 208750 3783200 3554000 4799500 3029000 2599600 2691900 2551900 3027200 2 2 1 2 2 2 2 2 2 2 2 895410 1391800 0 1345000 907740 848710 1044800 938780 926390 939180 1235700 833680 1298500 68896 1368000 873470 897250 1049000 949950 958600 917230 1182400 1 1 0 1 1 1 1 1 1 1 1 184240000 134600000 49640000 17000 1930 15616 86064;86065;86066;86067 104056;104057;104058 104057 3 SGAYLIPLLER Unmodified 1230.6972 0.69722304 810 P26196 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 71.755 71.794 2 1.708E-05 22538 20211116_3447_TMUAki_TMT10x_S_F8 112.89 67.176 28203000 47434000 143470 44016000 28579000 34785000 31991000 26543000 26796000 29902000 32308000 26260000 44248000 2359100 45007000 27490000 35821000 32110000 27503000 27683000 29065000 30996000 4 4 2 4 4 4 4 4 4 4 4 6455700 9635700 0 10006000 5832300 10477000 6673800 5954800 5837300 6198900 6647600 6010300 8992500 452640 10188000 5608600 10543000 6699600 6290000 6003900 6044100 6387600 1 1 0 1 1 1 1 1 1 1 1 21747000 37798000 143470 34010000 22747000 24308000 25317000 20588000 20959000 23703000 25661000 20249000 35255000 1906400 34819000 21881000 25278000 25411000 21213000 21679000 23021000 24608000 3 3 2 3 3 3 3 3 3 3 3 3177400000 1362100000 1815300000 17001 810 15617 86068;86069;86070 104059;104060;104061;104062 104062 4 SGCAASHFAVQECMAQHQDWR Oxidation (M) 2491.0216 0.021580213 3020 Q9NYJ1;Q9NYJ1-2 COA4 Cytochrome c oxidase assembly factor 4 homolog, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 5 0 2 1 1 34.534 34.599 4 4.1923E-10 8597 20211116_3433_TMUAki_TMT10x_P_F5 104.45 97.08 626440 1068300 168.11 1233700 1451500 1327800 829750 637000 724970 588030 832630 583260 997420 60582 1248300 1376000 1331300 870920 681050 745940 576310 799870 3 3 1 3 3 3 3 3 3 3 3 560510 932100 168.11 1090000 1386100 1275700 785130 563350 638040 527370 723490 521880 870330 56422 1103600 1313900 1272100 823260 607650 658560 516540 695280 2 2 1 2 2 2 2 2 2 2 2 65931 136160 0 143720 65410 52052 44620 73646 86932 60657 109140 61378 127080 4159.6 144710 62111 59167 47657 73400 87375 59776 104590 1 1 0 1 1 1 1 1 1 1 1 134830000 112000000 22839000 17002 3020 15618 86071;86072 104063;104064;104065 104063 3075 3 SGCAASHFAVQECMAQHQDWR Unmodified 2475.0267 0.026665591 3020 Q9NYJ1;Q9NYJ1-2 COA4 Cytochrome c oxidase assembly factor 4 homolog, mitochondrial yes no 0 0 0 0 By MS/MS 6 0 1 1 39.376 39.393 4 0.0066446 9219 20211116_3434_TMUAki_TMT10x_P_F6 50.232 46.993 862500 1473000 7301.3 1617300 1798300 1914200 1203100 823280 790000 726590 1192100 803130 1375000 91417 1644200 1709700 1907300 1238700 889220 836030 713610 1137500 1 1 1 1 1 1 1 1 1 1 1 862500 1473000 7301.3 1617300 1798300 1914200 1203100 823280 790000 726590 1192100 803130 1375000 91417 1644200 1709700 1907300 1238700 889220 836030 713610 1137500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22365000 22365000 0 17003 3020 15618 86073 104066 104066 1 SGCRPFCEVYVGDER Unmodified 1829.7825 0.78250237 150 O14976;O14976-2 GAK Cyclin-G-associated kinase yes no 0 0 0 1 By MS/MS By MS/MS 4 0 3 1 2 39.306 39.357 3 8.6203E-05 10081 20211116_3431_TMUAki_TMT10x_P_F4 88.133 75.773 1380300 2308900 0 2918400 2739100 2888100 1560200 1797700 1714600 1376700 1839500 1285100 2156700 126900 2933700 2596300 2919500 1649000 1870200 1741900 1361900 1770600 1 1 0 1 1 1 1 1 1 1 1 1380300 2308900 0 2918400 2739100 2888100 1560200 1797700 1714600 1376700 1839500 1285100 2156700 126900 2933700 2596300 2919500 1649000 1870200 1741900 1361900 1770600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 207480000 207480000 0 17004 150 15619 86074;86075;86076 104067;104068;104069 104067 3 SGDAAIVDMVPGKPMCVESFSDYPPLGR 2 Oxidation (M) 3026.3824 0.38237913 1416 P68104;Q5VTE0 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 0 0 2 1 By MS/MS By MS/MS 6.39 1.06 1 4 5 10 34 2 33 23 42.849 42.965 3;4;5 7.0985E-13 5869 20211116_3435_TMUAki_TMT10x_P_F7 111.4 102.07 136400000 237880000 1703900 196630000 146130000 298430000 162090000 232910000 244180000 229570000 195440000 127010000 221810000 11015000 205030000 140540000 296270000 166120000 240010000 243090000 224350000 190050000 86 86 40 86 86 86 86 86 86 86 86 100390000 172530000 1284900 142410000 98403000 248470000 119290000 168400000 177990000 168380000 140120000 93477000 160880000 7772800 148990000 94901000 244790000 121730000 175260000 177160000 164450000 136340000 61 61 25 61 61 61 61 61 61 61 61 36009000 65345000 419010 54225000 47724000 49954000 42798000 64513000 66184000 61186000 55323000 33529000 60932000 3242300 56040000 45642000 51481000 44393000 64758000 65922000 59895000 53705000 25 25 15 25 25 25 25 25 25 25 25 182370000000 97431000000 84938000000 17005 1416 15620 86077;86078;86079;86080;86081;86082;86083;86084;86085;86086;86087;86088;86089;86090;86091;86092;86093;86094;86095;86096;86097;86098;86099;86100;86101;86102;86103;86104;86105;86106;86107;86108;86109;86110;86111;86112;86113;86114;86115;86116;86117;86118;86119;86120;86121;86122;86123;86124;86125;86126;86127;86128;86129;86130;86131;86132 104070;104071;104072;104073;104074;104075;104076;104077;104078;104079;104080;104081;104082;104083;104084;104085;104086;104087;104088;104089;104090;104091;104092;104093;104094;104095;104096;104097;104098;104099;104100;104101;104102;104103;104104;104105;104106;104107;104108;104109;104110;104111;104112;104113;104114;104115;104116;104117;104118;104119;104120;104121;104122;104123;104124;104125;104126;104127;104128;104129;104130;104131;104132;104133;104134;104135;104136;104137;104138;104139;104140;104141;104142;104143;104144;104145;104146;104147;104148;104149;104150;104151;104152;104153;104154;104155 104116 1902;1903 86 SGDAAIVDMVPGKPMCVESFSDYPPLGR Oxidation (M) 3010.3875 0.38746451 1416 P68104;Q5VTE0 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 0 0 1 1 By MS/MS By MS/MS 6.34 1.42 2 8 8 9 24 14 40 25 53.929 53.997 3;4 5.5767E-18 24570 20211116_3446_TMUAki_TMT10x_S_F7 132.35 125.4 465850000 772420000 2602000 731780000 495730000 538730000 527470000 248930000 194840000 308050000 480470000 433750000 720600000 34425000 746520000 476100000 554210000 523080000 269490000 222910000 298420000 454650000 110 110 57 110 110 110 110 110 110 110 110 231260000 378040000 1427200 360700000 211220000 336010000 262060000 125670000 97901000 152390000 233480000 215330000 352690000 16135000 368830000 203800000 339100000 258080000 139180000 111590000 147730000 221030000 66 66 33 66 66 66 66 66 66 66 66 234590000 394380000 1174800 371080000 284510000 202720000 265410000 123260000 96943000 155660000 246990000 218430000 367910000 18290000 377690000 272300000 215110000 265000000 130300000 111320000 150690000 233620000 44 44 24 44 44 44 44 44 44 44 44 216200000000 106600000000 109610000000 17006 1416 15620 86133;86134;86135;86136;86137;86138;86139;86140;86141;86142;86143;86144;86145;86146;86147;86148;86149;86150;86151;86152;86153;86154;86155;86156;86157;86158;86159;86160;86161;86162;86163;86164;86165;86166;86167;86168;86169;86170;86171;86172;86173;86174;86175;86176;86177;86178;86179;86180;86181;86182;86183;86184;86185;86186;86187;86188;86189;86190;86191;86192;86193;86194;86195;86196;86197 104156;104157;104158;104159;104160;104161;104162;104163;104164;104165;104166;104167;104168;104169;104170;104171;104172;104173;104174;104175;104176;104177;104178;104179;104180;104181;104182;104183;104184;104185;104186;104187;104188;104189;104190;104191;104192;104193;104194;104195;104196;104197;104198;104199;104200;104201;104202;104203;104204;104205;104206;104207;104208;104209;104210;104211;104212;104213;104214;104215;104216;104217;104218;104219;104220;104221;104222;104223;104224;104225;104226;104227;104228;104229;104230;104231;104232;104233;104234;104235;104236;104237;104238;104239;104240;104241;104242;104243;104244;104245;104246;104247;104248;104249;104250;104251;104252;104253;104254;104255;104256;104257;104258;104259;104260;104261;104262;104263;104264 104256 1902;1903 109 SGDAAIVDMVPGKPMCVESFSDYPPLGR Unmodified 2994.3925 0.39254989 1416 P68104;Q5VTE0 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 0 0 0 1 By MS/MS By MS/MS 6.58 1.28 2 4 5 7 8 17 9 71.157 71.185 3;4 1.4936E-24 25755 20211116_3433_TMUAki_TMT10x_P_F5 141.29 134.09 397320000 617290000 3916400 703080000 397120000 294710000 425420000 126410000 99467000 140820000 358840000 369960000 576320000 32381000 705090000 381570000 321640000 419950000 137450000 124660000 136940000 338130000 46 46 29 46 46 46 46 46 46 46 46 192590000 293500000 2089000 338100000 171540000 186130000 215090000 69866000 53637000 71444000 172810000 179330000 274030000 15026000 339490000 165660000 196380000 210900000 76950000 65860000 69711000 163020000 30 30 20 30 30 30 30 30 30 30 30 204730000 323790000 1827400 364980000 225580000 108580000 210330000 56542000 45830000 69379000 186030000 190630000 302280000 17355000 365600000 215920000 125260000 209050000 60498000 58797000 67231000 175110000 16 16 9 16 16 16 16 16 16 16 16 115690000000 53916000000 61779000000 17007 1416 15620 86198;86199;86200;86201;86202;86203;86204;86205;86206;86207;86208;86209;86210;86211;86212;86213;86214;86215;86216;86217;86218;86219;86220;86221;86222;86223 104265;104266;104267;104268;104269;104270;104271;104272;104273;104274;104275;104276;104277;104278;104279;104280;104281;104282;104283;104284;104285;104286;104287;104288;104289;104290;104291;104292;104293;104294;104295;104296;104297;104298;104299;104300;104301;104302;104303;104304;104305;104306;104307;104308;104309;104310 104267 46 SGDAAIVDMVPGKPMCVESFSDYPPLGR Carbamidomethyl (C);Oxidation (M) 3067.4089 0.40892823 1416 P68104;Q5VTE0 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 0 1 1 1 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 58.566 58.77 4 0.025284 19412 20211116_3446_TMUAki_TMT10x_S_F7 41.562 35.104 6442600 11527000 273460 13964000 9049800 8956800 7075300 5878500 5091400 6312400 8673900 6000800 10765000 825510 13999000 8644300 9364300 7218600 6145200 5393600 6147200 8256400 3 3 3 3 3 3 3 3 3 3 3 3329300 5264500 158220 7057400 5863800 5952500 4372600 2384700 2009800 2346900 3761400 3101100 4919000 458980 7056600 5594600 6052000 4440100 2603500 2210100 2293700 3574200 1 1 1 1 1 1 1 1 1 1 1 3113300 6262100 115240 6906700 3186000 3004300 2702700 3493800 3081600 3965500 4912500 2899700 5845600 366530 6942100 3049700 3312300 2778500 3541700 3183400 3853500 4682200 2 2 2 2 2 2 2 2 2 2 2 1845700000 827360000 1018400000 17008 1416 15620 86224;86225;86226 104311;104312 104312 9 1902;1903 2 SGDAAIVEMVPGKPMCVESFSQYPPLGR 2 Oxidation (M) 3053.4297 0.42966367 1520 Q05639 EEF1A2 Elongation factor 1-alpha 2 yes yes 0 0 2 1 By MS/MS By MS/MS 6.78 0.786 4 3 2 5 4 64.743 64.939 3;4 5.5087E-09 19567 20211116_3434_TMUAki_TMT10x_P_F6 94.72 89.118 25124000 44956000 264740 40690000 30794000 48079000 32575000 45662000 44172000 42510000 37140000 23392000 41933000 1925100 41922000 29569000 48470000 33308000 46454000 44180000 41647000 36046000 15 15 6 15 15 15 15 15 15 15 15 10870000 19093000 184730 16783000 11617000 29524000 14606000 21223000 21360000 20343000 17341000 10122000 17807000 809200 17475000 11220000 29104000 14868000 21970000 21292000 19904000 16852000 8 8 3 8 8 8 8 8 8 8 8 14254000 25863000 80006 23907000 19177000 18556000 17969000 24440000 22812000 22167000 19800000 13270000 24126000 1115900 24447000 18349000 19366000 18440000 24484000 22889000 21743000 19193000 7 7 3 7 7 7 7 7 7 7 7 13571000000 7478100000 6092900000 17009 1520 15621 86227;86228;86229;86230;86231;86232;86233;86234;86235 104313;104314;104315;104316;104317;104318;104319;104320;104321;104322;104323;104324;104325;104326;104327 104315 2058;2059 15 SGDAAIVEMVPGKPMCVESFSQYPPLGR Oxidation (M) 3037.4347 0.43474905 1520 Q05639 EEF1A2 Elongation factor 1-alpha 2 yes yes 0 0 1 1 By MS/MS By MS/MS 7.14 0.639 2 8 4 7 7 70.505 70.675 3;4 5.4042E-18 23877 20211116_3446_TMUAki_TMT10x_S_F7 131.94 114.91 106270000 171990000 838450 161320000 118110000 130480000 122200000 74543000 65006000 83449000 117030000 98946000 160450000 8621200 164860000 113350000 133570000 121970000 78879000 70481000 81133000 111280000 34 34 18 34 34 34 34 34 34 34 34 49455000 76923000 504490 73670000 44922000 76590000 53984000 32804000 28211000 36180000 54382000 46049000 71765000 4181100 75429000 43311000 76860000 53486000 35663000 30756000 35196000 51650000 16 16 10 16 16 16 16 16 16 16 16 56814000 95072000 333960 87647000 73190000 53890000 68220000 41739000 36795000 47269000 62646000 52897000 88684000 4440100 89434000 70037000 56709000 68485000 43216000 39725000 45937000 59632000 18 18 8 18 18 18 18 18 18 18 18 22894000000 11411000000 11482000000 17010 1520 15621 86236;86237;86238;86239;86240;86241;86242;86243;86244;86245;86246;86247;86248;86249 104328;104329;104330;104331;104332;104333;104334;104335;104336;104337;104338;104339;104340;104341;104342;104343;104344;104345;104346;104347;104348;104349;104350;104351;104352;104353;104354;104355;104356;104357;104358;104359;104360;104361 104345 2058;2059 34 SGDAAIVEMVPGKPMCVESFSQYPPLGR Unmodified 3021.4398 0.43983443 1520 Q05639 EEF1A2 Elongation factor 1-alpha 2 yes yes 0 0 0 1 By MS/MS By MS/MS 7.57 0.495 3 4 3 4 76.468 76.487 3;4 2.1786E-18 24963 20211116_3436_TMUAki_TMT10x_P_F8 137.24 124.45 50627000 82083000 270320 86959000 54211000 51329000 64097000 25083000 24008000 28257000 50600000 47139000 76610000 3147800 87835000 52230000 53898000 63259000 26922000 27122000 27466000 47988000 13 13 6 13 13 13 13 13 13 13 13 25892000 38358000 143530 39691000 22690000 33112000 30253000 13757000 12910000 14968000 23581000 24107000 35797000 1690800 40299000 21944000 33703000 29754000 15000000 14271000 14568000 22417000 6 6 3 6 6 6 6 6 6 6 6 24735000 43724000 126790 47268000 31520000 18217000 33845000 11326000 11098000 13289000 27019000 23031000 40813000 1457000 47537000 30285000 20195000 33504000 11922000 12851000 12898000 25571000 7 7 3 7 7 7 7 7 7 7 7 13577000000 5585500000 7991800000 17011 1520 15621 86250;86251;86252;86253;86254;86255;86256 104362;104363;104364;104365;104366;104367;104368;104369;104370;104371;104372;104373;104374 104367 13 SGDHLHNDSQIEADFR Acetyl (Protein N-term) 1881.8242 0.82416748 624 P11387 TOP1 DNA topoisomerase 1 yes yes 1 0 0 0 By MS/MS By MS/MS 2.2 1.17 2 1 1 1 2 3 35.922 35.842 3 5.3813E-29 8311 20211116_3428_TMUAki_TMT10x_P_F1 86.641 70.752 1060800 1586300 19629 1929200 2007600 1644600 1292100 1367700 1610900 1075500 1583900 987810 1481500 114030 1939600 1907900 1686700 1357900 1395800 1623900 1062500 1528800 4 4 2 4 4 4 4 4 4 4 4 622440 854890 0 1065100 1654100 1315300 938320 687630 902620 613300 916700 579510 798490 60581 1075500 1567700 1310400 988100 728580 920320 602040 883870 2 2 0 2 2 2 2 2 2 2 2 438360 731410 19629 864090 353500 329330 353810 680090 708230 462230 667240 408300 682980 53448 864150 340150 376360 369840 667240 703540 460420 644940 2 2 2 2 2 2 2 2 2 2 2 367680000 239960000 127710000 17012 624 15622 86257;86258;86259;86260;86261 104375;104376;104377;104378 104375 4 SGDITYGQFAQLYR Unmodified 1617.7787 0.77872084 728 P19174-2;P19174 PLCG1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 62.359 62.944 2;3 8.0786E-30 20547 20211116_3435_TMUAki_TMT10x_P_F7 215.08 155.06 5240600 9081200 50518 8639500 6108600 7841700 6199800 5517800 5324200 5017000 6436900 4879200 8472100 414460 8833000 5857400 7985600 6256900 5712400 5494300 4920500 6175000 2 2 1 2 2 2 2 2 2 2 2 3133200 5048700 0 4569200 3240700 5493600 3447700 2794800 2647100 2399600 3401400 2916700 4709200 182010 4709000 3107400 5478900 3461500 2966000 2754800 2359900 3257900 1 1 0 1 1 1 1 1 1 1 1 2107400 4032500 50518 4070300 2867900 2348100 2752200 2723000 2677100 2617400 3035400 1962500 3762900 232450 4124000 2750000 2506700 2795400 2746400 2739500 2560600 2917100 1 1 1 1 1 1 1 1 1 1 1 1379800000 912680000 467080000 17013 728 15623 86262;86263 104379;104380 104379 2 SGEDEQQEQTIAEDLVVTK Acetyl (Protein N-term) 2160.007 0.007002036 3217 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 yes yes 1 0 0 0 By MS/MS By MS/MS 1.33 0.471 4 2 4 2 58.421 58.332 2;3 1.2854E-70 24955 20211116_3428_TMUAki_TMT10x_P_F1 147.87 125.29 19104000 34053000 164030 30609000 20762000 29238000 22558000 19589000 20323000 20746000 23695000 17789000 31762000 1670600 31449000 19957000 29654000 22718000 20439000 20892000 20214000 22753000 6 6 3 6 6 6 6 6 6 6 6 10596000 18057000 50230 15953000 11081000 20356000 13495000 10616000 11627000 11350000 13058000 9866200 16842000 878910 16489000 10685000 20247000 13505000 11307000 11961000 11055000 12552000 4 4 2 4 4 4 4 4 4 4 4 8508100 15995000 113800 14656000 9681500 8882100 9062400 8973300 8696200 9396000 10637000 7922400 14920000 791710 14960000 9272100 9406700 9213400 9131500 8931800 9159200 10201000 2 2 1 2 2 2 2 2 2 2 2 13286000000 7262100000 6024400000 17014 3217 15624 86264;86265;86266;86267;86268;86269 104381;104382;104383;104384;104385;104386 104383 6 SGEEDFESLASQFSDCSSAK Unmodified 2179.8852 0.88517234 1642 Q13526 PIN1 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.75 0.829 2 1 1 1 3 73.586 73.422 3 6.192E-42 25072 20211116_3429_TMUAki_TMT10x_P_F2 212.72 201.78 13305000 22200000 105920 23081000 15198000 17119000 16592000 11637000 10490000 12313000 16099000 12389000 20718000 1215400 23395000 14613000 17685000 16568000 12128000 11138000 11998000 15357000 5 5 4 5 5 5 5 5 5 5 5 3332000 5433300 6863.3 5869000 2972800 6308700 3844700 2913800 2372100 2996300 3862300 3102500 5071500 277610 5963200 2872800 6323500 3808600 3136400 2530500 2922900 3679700 1 1 1 1 1 1 1 1 1 1 1 9972500 16766000 99053 17212000 12225000 10811000 12748000 8722700 8118400 9317100 12237000 9286000 15646000 937760 17432000 11740000 11361000 12760000 8991900 8607800 9075100 11677000 4 4 3 4 4 4 4 4 4 4 4 3337600000 1160300000 2177300000 17015 1642 15625 86270;86271;86272;86273 104387;104388;104389;104390;104391 104387 5 SGEENPASKPTPVQDVQGDGR Acetyl (Protein N-term) 2209.0247 0.024717786 1770 Q15102 PAFAH1B3 Platelet-activating factor acetylhydrolase IB subunit gamma yes yes 1 0 0 1 By MS/MS By MS/MS 1.83 0.687 2 3 1 2 4 38.303 38.229 2;3 4.7568E-27 9158 20211116_3440_TMUAki_TMT10x_S_F2 110.77 92.639 3393500 4972100 17793 9969100 15848000 10352000 5858300 6015100 9276100 4023000 7076500 3159500 4658100 267670 9822900 14943000 10425000 6570500 6275000 9209200 4011200 6894600 11 11 3 11 11 11 11 11 11 11 11 2395700 3455400 6185.5 7312700 15122000 9678800 5146300 4288300 6778900 2871300 5064200 2230400 3238700 186300 7223100 14248000 9593000 5792200 4589700 6764100 2862700 4938400 6 6 1 6 6 6 6 6 6 6 6 997830 1516700 11607 2656400 725300 673150 712070 1726700 2497200 1151700 2012300 929100 1419500 81373 2599800 695280 831770 778240 1685200 2445100 1148500 1956200 5 5 2 5 5 5 5 5 5 5 5 1861300000 1599800000 261450000 17016 1770 15626 86274;86275;86276;86277;86278;86279 104392;104393;104394;104395;104396;104397;104398;104399;104400;104401;104402 104400 11 SGEGEVSGLMR Oxidation (M) 1136.5132 0.51318702 1615 Q13263;Q13263-2 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 1 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 31.301 31.153 2 0.00032481 8020 20211116_3429_TMUAki_TMT10x_P_F2 96.948 82.279 291900 464690 632.11 580230 1159600 664830 398790 283470 341280 256640 463690 271790 434040 36943 585040 1092800 663490 442520 306650 354050 251760 443520 1 1 1 1 1 1 1 1 1 1 1 291900 464690 632.11 580230 1159600 664830 398790 283470 341280 256640 463690 271790 434040 36943 585040 1092800 663490 442520 306650 354050 251760 443520 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 131020000 116430000 14581000 17017 1615 15627 86280;86281;86282;86283;86284 104403;104404;104405 104404 2167 3 SGEGEVSGLMR Unmodified 1120.5183 0.5182724 1615 Q13263;Q13263-2 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 37.738 37.603 2 1.0445E-11 10667 20211116_3429_TMUAki_TMT10x_P_F2 177.58 150.09 2190500 3011200 6771.2 4951000 5521200 2691400 2432500 1709400 1665800 1492800 3285600 2039600 2817000 227330 4880100 5216300 2859100 2605100 1781100 1785700 1466800 3119400 3 3 1 3 3 3 3 3 3 3 3 1041400 1344800 0 2244900 4563600 2079000 1474400 848340 797900 771950 1529100 969620 1258200 130670 2224100 4297800 2100500 1636100 922360 867270 757070 1452400 1 1 0 1 1 1 1 1 1 1 1 1149100 1666400 6771.2 2706100 957620 612370 958090 861070 867890 720820 1756600 1070000 1558800 96656 2655900 918490 758580 969010 858730 918410 709770 1667000 2 2 1 2 2 2 2 2 2 2 2 168790000 108960000 59825000 17018 1615 15627 86285;86286;86287 104406;104407;104408 104406 3 SGERPVTAGEEDEQVPDSIDAR Unmodified 2356.0779 0.077875568 3276 Q9Y3D0 FAM96B Mitotic spindle-associated MMXD complex subunit MIP18 yes yes 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 36.653 36.556 3 3.6191E-102 8596 20211116_3428_TMUAki_TMT10x_P_F1 316.27 294.15 1229600 1932100 29330 3253600 3845500 3432800 1958200 2442200 2948000 1474400 2429900 1145000 1807800 155230 3228600 3640900 3463800 2115600 2504100 2937300 1479800 2360000 4 4 3 4 4 4 4 4 4 4 4 732710 1151500 28957 1958600 3561200 3169000 1686100 1533800 1854400 911190 1507900 682360 1077500 116670 1959200 3368600 3116900 1813500 1623300 1866900 915560 1465300 3 3 2 3 3 3 3 3 3 3 3 496840 780630 372.13 1295100 284310 263810 272120 908440 1093600 563170 921980 462610 730340 38562 1269400 272330 346850 302090 880770 1070500 564240 894710 1 1 1 1 1 1 1 1 1 1 1 435020000 335800000 99218000 17019 3276 15628 86288;86289;86290 104409;104410;104411;104412 104409 4 SGETEDTFIADLVVGLCTGQIK Unmodified 2352.1519 0.15189213 520;568;661 P06733;P06733-2;P09104;P09104-2;P13929;P13929-3;P13929-2 ENO1;ENO2;ENO3 Alpha-enolase;Gamma-enolase;Beta-enolase no no 0 0 0 0 By MS/MS By MS/MS 2.78 1.31 2 2 2 2 1 4 5 82.104 82.091 3 1.5932E-55 26662 20211116_3444_TMUAki_TMT10x_S_F5 219.66 208.87 31001000 51479000 389020 42293000 34662000 49076000 40208000 33601000 35481000 39808000 39395000 28866000 48001000 2783100 43897000 33385000 49229000 40349000 35130000 36441000 38623000 37882000 13 13 8 13 13 13 13 13 13 13 13 16810000 27068000 162170 21811000 15104000 32286000 19197000 17699000 19039000 21000000 20221000 15651000 25238000 1332000 22779000 14583000 31917000 19254000 18830000 19418000 20374000 19470000 6 6 2 6 6 6 6 6 6 6 6 14191000 24411000 226850 20482000 19557000 16790000 21011000 15903000 16441000 18808000 19174000 13215000 22764000 1451100 21117000 18802000 17312000 21095000 16300000 17023000 18249000 18412000 7 7 6 7 7 7 7 7 7 7 7 5695500000 3170900000 2524600000 17020 520;568;661 15629 86291;86292;86293;86294;86295;86296;86297;86298;86299 104413;104414;104415;104416;104417;104418;104419;104420;104421;104422;104423;104424;104425 104425 13 SGEVLVNVK Unmodified 943.53385 0.53384611 1623 Q13347 EIF3I Eukaryotic translation initiation factor 3 subunit I yes yes 0 0 0 0 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 44.311 44.462 2 6.2375E-06 12166 20211116_3431_TMUAki_TMT10x_P_F4 179.17 147.8 16795000 25999000 113850 26651000 21040000 25057000 18365000 19116000 18545000 16539000 21084000 15637000 24262000 1426300 27118000 20105000 25491000 18774000 19658000 18949000 16259000 20261000 4 4 2 4 4 4 4 4 4 4 4 10144000 15300000 103760 15898000 14393000 18898000 12102000 11562000 11405000 10111000 12520000 9445400 14279000 900970 16221000 13743000 18902000 12374000 12082000 11673000 9934700 12043000 2 2 1 2 2 2 2 2 2 2 2 6650400 10698000 10084 10753000 6646300 6158900 6262900 7553900 7140100 6428300 8564700 6192000 9982900 525320 10897000 6361500 6589000 6399900 7576200 7276000 6324600 8217900 2 2 1 2 2 2 2 2 2 2 2 990950000 277490000 713470000 17021 1623 15630 86300;86301;86302;86303;86304 104426;104427;104428;104429;104430;104431 104426 6 SGFDDPGIFYSDSFGGDAQADEGQAR Acetyl (Protein N-term) 2750.1368 0.13684701 912 P33992 MCM5 DNA replication licensing factor MCM5 yes yes 1 0 0 0 By MS/MS 1 0 1 1 79.943 79.907 2 6.085E-98 28199 20211116_3439_TMUAki_TMT10x_S_F1 195.2 181.17 136310 248970 0 259790 205670 176510 200090 185560 128360 146150 173410 126920 232360 0 263020 197070 185160 201030 187020 135330 144360 165880 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 136310 248970 0 259790 205670 176510 200090 185560 128360 146150 173410 126920 232360 0 263020 197070 185160 201030 187020 135330 144360 165880 1 1 0 1 1 1 1 1 1 1 1 303340000 0 303340000 17022 912 15631 86305 104432 104432 1 SGFGEISSPVIR Unmodified 1247.651 0.65100113 1267 P57740 NUP107 Nuclear pore complex protein Nup107 yes yes 0 0 0 0 By MS/MS 6 0 1 1 52.101 52.233 2 0.0030726 14720 20211116_3445_TMUAki_TMT10x_S_F6 70.412 50.196 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17023 1267 15632 86306 104433 104433 1 SGFLEELLGEK Acetyl (Protein N-term) 1262.6394 0.63943339 1970 Q6DKJ4 NXN Nucleoredoxin yes yes 1 0 0 0 By MS/MS By MS/MS 2.38 1.11 2 3 1 2 3 5 74.16 74.149 2 1.7684E-14 27882 20211116_3428_TMUAki_TMT10x_P_F1 93.649 25.227 7667100 12738000 32361 12031000 8588800 12142000 9163400 6929700 7338100 7867100 9753400 7138200 11883000 560400 12325000 8244100 12246000 9208300 7336700 7630900 7644800 9333900 8 8 3 8 8 8 8 8 8 8 8 5398000 8629400 8587.8 8525500 5418900 9352900 6153000 4713400 5005500 5467300 6656800 5025300 8051800 342370 8717100 5207500 9372800 6167400 5049000 5201000 5308600 6370400 4 4 1 4 4 4 4 4 4 4 4 2269100 4108100 23773 3505500 3169900 2789200 3010400 2216200 2332600 2399900 3096600 2112900 3831100 218020 3608100 3036600 2872800 3040900 2287700 2429800 2336300 2963500 4 4 2 4 4 4 4 4 4 4 4 442090000 285510000 156580000 17024 1970 15633 86307;86308;86309;86310;86311;86312;86313;86314 104434;104435;104436;104437;104438;104439;104440;104441;104442 104434 9 SGFNFGGTGAPTGGFTFGTAK Acetyl (Protein N-term) 2019.9327 0.9326553 963 P37198 NUP62 Nuclear pore glycoprotein p62 yes yes 1 0 0 0 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 70.37 70.316 2;3 7.4654E-14 25559 20211116_3447_TMUAki_TMT10x_S_F8 83.499 68.527 3405500 5641000 1946.2 5033300 4020500 4577800 3908400 3132300 3176100 3515700 4161000 3170200 5261400 216990 5170900 3847400 4659100 3947600 3269100 3298100 3417800 3983500 4 4 1 4 4 4 4 4 4 4 4 1200800 1802800 1946.2 1589100 939100 1875400 1272700 827140 980680 1067000 1180700 1117700 1681400 52356 1640500 906010 1869300 1264400 901060 1017500 1032200 1132800 2 2 1 2 2 2 2 2 2 2 2 2204700 3838200 0 3444200 3081400 2702400 2635700 2305200 2195400 2448700 2980300 2052600 3579900 164630 3530400 2941400 2789900 2683200 2368100 2280600 2385600 2850700 2 2 0 2 2 2 2 2 2 2 2 3718400000 1804500000 1913800000 17025 963 15634 86315;86316;86317;86318;86319;86320 104443;104444;104445;104446 104446 4 SGFNLEELEK Unmodified 1164.5663 0.56626845 2698 Q9BVP2;Q9BVP2-2 GNL3 Guanine nucleotide-binding protein-like 3 yes no 0 0 0 0 By matching By MS/MS 3.5 0.5 1 1 1 1 62.392 62.185 2 0.00045659 19871 20211116_3442_TMUAki_TMT10x_S_F4 108.31 58.777 4991100 8427600 161240 9499200 4758500 4721900 3904400 7287500 7984500 7018600 8440800 4648400 7867800 560820 9543600 4551000 5162700 4131400 7271900 7960500 6865800 8128400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4991100 8427600 161240 9499200 4758500 4721900 3904400 7287500 7984500 7018600 8440800 4648400 7867800 560820 9543600 4551000 5162700 4131400 7271900 7960500 6865800 8128400 1 1 1 1 1 1 1 1 1 1 1 586020000 266050000 319970000 17026 2698 15635 86321;86322 104447 104447 1 SGFSLDNGELR Unmodified 1193.5677 0.56766543 3203 Q9UNZ2;Q9UNZ2-5;Q9UNZ2-4;Q9UNZ2-6 NSFL1C NSFL1 cofactor p47 yes no 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 48.213 48.136 2 4.5759E-11 16369 20211116_3441_TMUAki_TMT10x_S_F3 169.76 135.67 8069900 12558000 20830 16391000 18365000 17891000 10302000 12156000 14338000 10960000 12543000 7513300 11732000 734940 16473000 17401000 18005000 10996000 12613000 14347000 10753000 12155000 4 4 1 4 4 4 4 4 4 4 4 6286700 9444900 0 12375000 16833000 16518000 9142400 9123800 10864000 8431700 9585900 5852700 8824100 571210 12480000 15941000 16406000 9728900 9628900 10931000 8263400 9286700 3 3 0 3 3 3 3 3 3 3 3 1783300 3112900 20830 4015500 1531500 1373400 1159300 3032500 3474800 2528100 2956800 1660500 2908100 163730 3993200 1460400 1599400 1267100 2984400 3415300 2489800 2868400 1 1 1 1 1 1 1 1 1 1 1 566100000 455910000 110190000 17027 3203 15636 86323;86324;86325;86326;86327 104448;104449;104450;104451;104452;104453 104452 6 SGFSPELIDYLEGK Acetyl (Protein N-term) 1595.7719 0.77190413 3326 Q9Y5Q9;Q9Y5Q9-2 GTF3C3 General transcription factor 3C polypeptide 3 yes no 1 0 0 0 By MS/MS By MS/MS 2.71 1.16 2 5 3 3 1 6 8 68.936 68.918 2 1.4256E-29 27134 20211116_3428_TMUAki_TMT10x_P_F1 140.07 109.82 11641000 19038000 119840 17354000 12570000 17089000 13925000 10587000 10567000 11563000 14009000 10839000 17758000 1012100 17819000 12089000 17279000 13950000 11122000 11019000 11253000 13408000 8 8 3 8 8 8 8 8 8 8 8 6747600 10540000 10245 9472100 6105000 11691000 7687200 5894100 6074100 6698600 8040200 6282300 9830900 501400 9771700 5890400 11643000 7664800 6309300 6319700 6509100 7695200 3 3 1 3 3 3 3 3 3 3 3 4893700 8497700 109600 7882100 6465300 5397500 6237600 4693300 4492900 4864100 5969300 4557200 7927000 510740 8047300 6198900 5636000 6284900 4812500 4699400 4743500 5712600 5 5 2 5 5 5 5 5 5 5 5 2610400000 1695900000 914560000 17028 3326 15637 86328;86329;86330;86331;86332;86333;86334;86335;86336;86337;86338;86339;86340;86341 104454;104455;104456;104457;104458;104459;104460;104461;104462;104463;104464;104465 104454 12 SGGELDIVVTSNK Unmodified 1317.6776 0.67760981 2516 Q96M27;Q96M27-3;Q96M27-2;Q96M27-5;Q96M27-4 PRRC1 Protein PRRC1 yes no 0 0 0 0 By MS/MS By MS/MS 4.43 0.495 4 3 3 4 52.107 52.258 2;3 1.025E-22 15292 20211116_3431_TMUAki_TMT10x_P_F4 211.46 128.2 40675000 65443000 1362800 64643000 64517000 83138000 46855000 71170000 66742000 61476000 61917000 37882000 61062000 4909100 66279000 61497000 83286000 49066000 72674000 66857000 60440000 59879000 6 6 5 6 6 6 6 6 6 6 6 21529000 34775000 907950 33174000 47679000 65794000 30757000 38219000 35963000 34409000 32278000 20052000 32443000 2930200 34444000 45342000 64395000 32244000 40136000 36228000 33763000 31252000 3 3 2 3 3 3 3 3 3 3 3 19146000 30667000 454800 31469000 16838000 17344000 16098000 32951000 30779000 27067000 29639000 17830000 28619000 1978900 31836000 16154000 18891000 16822000 32538000 30630000 26677000 28627000 3 3 3 3 3 3 3 3 3 3 3 2592000000 1438100000 1153900000 17029 2516 15638 86342;86343;86344;86345;86346;86347;86348 104466;104467;104468;104469;104470;104471 104467 6 SGGGTGEEPGSQGLNGEAGPEDSTR Unmodified 2345.0004 0.0003535287 183 O15355 PPM1G Protein phosphatase 1G yes yes 0 0 0 0 By MS/MS By matching 1 0 2 1 1 33.198 33.204 3 3.5735E-73 7261 20211116_3428_TMUAki_TMT10x_P_F1 246.98 232.46 60438 81868 0 189500 548530 162120 81799 44627 104860 29068 120300 56263 76794 10562 185310 514140 164200 108090 50837 106210 29031 115580 1 1 0 1 1 1 1 1 1 1 1 60438 81868 0 189500 548530 162120 81799 44627 104860 29068 120300 56263 76794 10562 185310 514140 164200 108090 50837 106210 29031 115580 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 55398000 38397000 17000000 17030 183 15639 86349;86350 104472 104472 1 SGGGVIRGPAGNNDCR Acetyl (Protein N-term) 1627.7485 0.74850012 1543 Q07955;Q07955-3;Q07955-2 SRSF1 Serine/arginine-rich splicing factor 1 no no 1 0 0 1 By matching 2 0 1 1 29.223 28.989 2 1 NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4978900 4978900 0 17031 1543 15640 86351 0 SGGGYIVVDPILR Unmodified 1344.7402 0.74015049 933 P35573;P35573-2;P35573-3 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes no 0 0 0 0 By MS/MS 6 0 1 1 62.137 62.165 2 0.0043237 18455 20211116_3434_TMUAki_TMT10x_P_F6 67.726 48.747 3887900 6225800 3850.8 7115400 5864900 9545100 5056600 5054100 5241900 4776600 5102400 3620000 5812700 353610 7232400 5603500 9473100 5177100 5357000 5319700 4676500 4926500 1 1 1 1 1 1 1 1 1 1 1 3887900 6225800 3850.8 7115400 5864900 9545100 5056600 5054100 5241900 4776600 5102400 3620000 5812700 353610 7232400 5603500 9473100 5177100 5357000 5319700 4676500 4926500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 409240000 409240000 0 17032 933 15641 86352 104473 104473 1 SGGLGGSHALLLLR Unmodified 1349.7779 0.77793298 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 49.791 49.576 3 1.8571E-06 16966 20211116_3441_TMUAki_TMT10x_S_F3 110.44 84.32 3209500 5823300 68489 5775600 5082200 5537800 3457400 4811600 4565600 4081800 4732600 2988800 5433600 356140 5891900 4836400 5639900 3626300 4907000 4602200 4016600 4560200 2 2 2 2 2 2 2 2 2 2 2 1492800 2711600 29487 2608900 2789100 3738700 1972900 2335800 2100000 1903300 2240200 1390200 2529800 169400 2685600 2655500 3707600 2047800 2432800 2135800 1876700 2156700 1 1 1 1 1 1 1 1 1 1 1 1716600 3111700 39002 3166800 2293100 1799000 1484500 2475800 2465600 2178500 2492400 1598600 2903700 186740 3206300 2180800 1932300 1578500 2474200 2466400 2139900 2403500 1 1 1 1 1 1 1 1 1 1 1 295100000 100820000 194280000 17033 1018 15642 86353;86354;86355 104474;104475;104476 104476 3 SGGLPLVLSMLTR Unmodified 1342.7643 0.76425675 2386 Q93008;Q93008-1 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes no 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 71.401 71.21 2 0.0054925 25750 20211116_3441_TMUAki_TMT10x_S_F3 63.283 32.713 25146000 40559000 16221 37916000 28063000 40875000 30113000 28958000 25963000 28900000 32236000 23411000 37836000 1862900 38912000 26942000 41190000 30309000 30042000 26817000 28228000 30903000 6 6 2 6 6 6 6 6 6 6 6 16559000 25427000 11467 24021000 17160000 31147000 20224000 18866000 16806000 18374000 20510000 15416000 23721000 1141000 24711000 16515000 31015000 20248000 19787000 17378000 17966000 19670000 4 4 1 4 4 4 4 4 4 4 4 8587300 15132000 4754 13895000 10903000 9727700 9889500 10092000 9157200 10526000 11726000 7995400 14116000 721870 14200000 10427000 10175000 10062000 10255000 9439100 10262000 11232000 2 2 1 2 2 2 2 2 2 2 2 3558300000 1673700000 1884500000 17034 2386 15643 86356;86357;86358;86359;86360 104477;104478;104479;104480;104481;104482 104481 6 SGGMERPFVLAR Oxidation (M) 1334.6765 0.67650438 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 1 1 By MS/MS By MS/MS 3.8 3.43 3 2 3 2 35.431 35.499 3 4.9847E-06 7052 20211116_3447_TMUAki_TMT10x_S_F8 104.24 61.908 1720500 2679600 27593 3379700 3927600 2493000 2029200 1354000 1281300 1319800 2281600 1602000 2503000 184970 3385100 3719000 2568800 2134400 1433100 1371700 1290400 2170000 5 5 4 5 5 5 5 5 5 5 5 1102300 1741300 27593 2159400 3381600 2128700 1571400 882280 823630 849160 1464700 1026500 1626300 149030 2172900 3198600 2142500 1665500 958950 893370 830700 1393100 4 4 4 4 4 4 4 4 4 4 4 618190 938390 0 1220300 545970 364310 457790 471710 457640 470610 816850 575480 876670 35945 1212200 520350 426350 468960 474150 478320 459660 776870 1 1 0 1 1 1 1 1 1 1 1 284350000 199390000 84952000 17035 1730 15644 86361;86362;86363;86364;86365 104483;104484;104485;104486;104487;104488 104488 2327 6 SGGMERPFVLAR Unmodified 1318.6816 0.68158975 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 1 By MS/MS By MS/MS 4.33 3.09 2 1 1 2 2 4 39.489 39.604 3 6.2501E-12 9862 20211116_3428_TMUAki_TMT10x_P_F1 167.44 124.16 13089000 21046000 263050 25703000 15115000 12364000 12571000 8905900 7833000 8654400 16874000 12189000 19655000 1298000 25693000 14441000 13340000 12738000 9221900 8496900 8462700 15998000 6 6 5 6 6 6 6 6 6 6 6 3409700 5121800 13402 6070000 7625400 5828500 4607000 2455900 2128700 2148400 4357200 3174800 4782800 354220 6121900 7236500 5876800 4754200 2658000 2353100 2110900 4134200 2 2 2 2 2 2 2 2 2 2 2 9679400 15924000 249640 19633000 7490000 6535100 7964000 6450000 5704300 6506000 12517000 9013800 14872000 943780 19571000 7204800 7463500 7983500 6563900 6143800 6351800 11864000 4 4 3 4 4 4 4 4 4 4 4 1018400000 649450000 368930000 17036 1730 15644 86366;86367;86368;86369;86370;86371 104489;104490;104491;104492;104493;104494;104495;104496 104489 8 SGGMSNELNNIISR Oxidation (M) 1506.7097 0.709655 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 1 0 By MS/MS By MS/MS 4.11 0.737 2 4 3 7 2 43.642 43.772 2;3 3.2616E-19 11896 20211116_3431_TMUAki_TMT10x_P_F4 169.4 151.26 5710100 9230900 88572 11108000 12276000 12946000 7354000 10994000 12843000 8924700 9282300 5317100 8620500 623300 11227000 11650000 13032000 7886800 11214000 12699000 8801600 9064500 7 7 4 7 7 7 7 7 7 7 7 3917400 6210000 70001 7583900 10966000 11700000 6254100 7211400 8701200 6161400 6293100 3647900 5799700 468170 7701300 10399000 11564000 6665900 7527100 8659400 6060800 6145300 5 5 3 5 5 5 5 5 5 5 5 1792600 3021000 18571 3523900 1309400 1246700 1099900 3782500 4142100 2763300 2989200 1669200 2820800 155130 3525400 1251100 1467500 1220900 3687300 4039800 2740800 2919200 2 2 1 2 2 2 2 2 2 2 2 2561900000 1942800000 619120000 17037 1200 15645 86372;86373;86374;86375;86376;86377;86378;86379;86380 104497;104498;104499;104500;104501;104502;104503;104504;104505;104506 104501 1609 10 SGGMSNELNNIISR Unmodified 1490.7147 0.71474038 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 By MS/MS By MS/MS 6 0 3 1 2 54.178 54.283 2;3 3.2437E-29 15527 20211116_3445_TMUAki_TMT10x_S_F6 204.01 157.2 6318200 10956000 3710.5 11961000 5711500 4041600 4584800 5300400 5098300 5512000 7735400 5882100 10227000 425310 12013000 5442300 4634200 4725400 5331900 5257800 5374600 7380500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6318200 10956000 3710.5 11961000 5711500 4041600 4584800 5300400 5098300 5512000 7735400 5882100 10227000 425310 12013000 5442300 4634200 4725400 5331900 5257800 5374600 7380500 2 2 1 2 2 2 2 2 2 2 2 727910000 0 727910000 17038 1200 15645 86381;86382;86383 104507;104508;104509 104508 3 SGGNEVSIEER Unmodified 1175.5418 0.54184461 1767 Q15061 WDR43 WD repeat-containing protein 43 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 30.723 30.748 2 0.0033011 8238 20211116_3439_TMUAki_TMT10x_S_F1 75.849 45.286 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17039 1767 15646 86384;86385 104510;104511 104511 2 SGGQVRDEYRQDYDAGR Unmodified 1970.8831 0.88307935 1174 P52298;P52298-3;P52298-2 NCBP2 Nuclear cap-binding protein subunit 2 yes no 0 0 0 2 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 28.609 28.36 3;4 9.0898E-43 8441 20211116_3441_TMUAki_TMT10x_S_F3 222.11 176.24 161900 239400 3162.1 333380 478810 279920 207600 218540 313180 164900 290840 150760 223730 19791 332660 452420 287080 228030 223690 313190 163260 281260 3 3 1 3 3 3 3 3 3 3 3 89208 144190 3162.1 179150 397560 217150 138070 123800 166190 100920 151560 83084 134670 14483 180860 374860 216770 154490 129900 167320 99507 146660 2 2 1 2 2 2 2 2 2 2 2 72689 95212 0 154230 81248 62773 69537 94734 146990 63974 139280 67674 89063 5307.3 151800 77555 70308 73545 93785 145870 63748 134600 1 1 0 1 1 1 1 1 1 1 1 35244000 25753000 9490800 17040 1174 15647 86386;86387;86388 104512;104513;104514 104514 3 SGGTEGLLAEKLEALITQTR Unmodified 2086.127 0.12699801 3116 Q9UHB9;Q9UHB9-4 SRP68 Signal recognition particle subunit SRP68 yes no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 79.51 79.526 3 1.0343E-41 25568 20211116_3447_TMUAki_TMT10x_S_F8 211.68 181.95 45669000 76615000 492660 59258000 56833000 75537000 59502000 53009000 52699000 57325000 61093000 42524000 71425000 4098300 61923000 54571000 75442000 60006000 55162000 54208000 55808000 58674000 7 7 5 7 7 7 7 7 7 7 7 21912000 36512000 118310 27637000 21954000 43328000 26548000 24692000 24835000 27339000 28331000 20402000 34036000 1784200 29056000 21164000 42753000 26636000 26125000 25465000 26592000 27222000 4 4 3 4 4 4 4 4 4 4 4 23757000 40103000 374350 31621000 34879000 32209000 32954000 28318000 27864000 29985000 32762000 22121000 37388000 2314100 32867000 33407000 32688000 33370000 29038000 28743000 29216000 31453000 3 3 2 3 3 3 3 3 3 3 3 4485200000 2421300000 2063900000 17041 3116 15648 86389;86390;86391;86392 104515;104516;104517;104518;104519;104520;104521 104520 7 SGGVNQYVVQEVLSIK Unmodified 1718.9203 0.9202997 1754 Q15021 NCAPD2 Condensin complex subunit 1 yes yes 0 0 0 0 By MS/MS 7 0 1 1 77.925 77.988 2 1.1378E-14 27428 20211116_3446_TMUAki_TMT10x_S_F7 145 116.79 1994900 3744200 24148 4079900 3034800 2533500 2837900 1999200 1883700 2235800 2904900 1857600 3495000 202460 4115300 2906500 2664300 2859400 2066700 1994300 2173900 2770600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1994900 3744200 24148 4079900 3034800 2533500 2837900 1999200 1883700 2235800 2904900 1857600 3495000 202460 4115300 2906500 2664300 2859400 2066700 1994300 2173900 2770600 1 1 1 1 1 1 1 1 1 1 1 619750000 0 619750000 17042 1754 15649 86393 104522 104522 1 SGILPILVHCLER Unmodified 1505.8388 0.83881868 106 O00629 KPNA4 Importin subunit alpha-3 yes yes 0 0 0 0 By MS/MS 1 0 2 2 71.818 71.818 3 0.017554 22937 20211116_3428_TMUAki_TMT10x_P_F1 56.08 39.138 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17043 106 15650 86394;86395 104523;104524 104524 2 SGILPILVK Unmodified 938.61645 0.61645353 98 O00505 KPNA3 Importin subunit alpha-4 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 70.742 70.427 2 2.0406E-05 25470 20211116_3441_TMUAki_TMT10x_S_F3 145.63 145.63 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17044 98 15651 86396;86397;86398 104525;104526;104527 104527 3 SGIQPLCPER Unmodified 1155.5706 0.57064232 1006 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 36.472 36.572 2 0.00010881 9056 20211116_3431_TMUAki_TMT10x_P_F4 121.6 84.583 1716600 2621800 2384.9 3510000 4824400 3513500 1950900 2390600 2796700 2126200 2714600 1598100 2449700 166420 3518100 4552400 3553900 2155300 2479300 2805300 2087400 2621200 2 2 1 2 2 2 2 2 2 2 2 1185000 1738500 0 2378200 4352100 3048600 1496200 1627600 1895800 1435900 1812600 1103200 1624600 120960 2391000 4099800 3032400 1679300 1720800 1908200 1410300 1751100 1 1 0 1 1 1 1 1 1 1 1 531520 883270 2384.9 1131800 472340 464880 454730 763020 900900 690290 902000 494920 825120 45461 1127100 452610 521420 475990 758560 897020 677170 870090 1 1 1 1 1 1 1 1 1 1 1 180170000 147240000 32931000 17045 1006 15652 86399;86400 104528;104529 104528 2 SGIVEYLSLVK Unmodified 1206.686 0.68598966 1108 P49642 PRIM1 DNA primase small subunit yes yes 0 0 0 0 By MS/MS 8 0 1 1 78.102 78.108 2 0.0034799 25623 20211116_3436_TMUAki_TMT10x_P_F8 75.197 47.023 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17046 1108 15653 86401 104530 104530 1 SGKAPILIATDVASR Unmodified 1497.8515 0.85149185 2368 Q92841;Q92841-3;Q92841-1;Q92841-2 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 0 1 By MS/MS By MS/MS 4 3.29 2 1 2 2 3 49.97 49.889 3 7.5158E-07 13909 20211116_3428_TMUAki_TMT10x_P_F1 114.99 96.158 37780000 64646000 278990 54539000 62765000 75950000 45840000 75428000 71899000 63209000 61564000 35178000 60283000 3589200 56673000 59763000 76040000 48189000 76350000 71638000 62237000 59709000 7 7 4 7 7 7 7 7 7 7 7 19959000 33158000 0 27318000 41962000 56260000 29266000 38833000 38185000 32772000 30703000 18582000 30918000 1809900 28714000 39906000 55137000 30626000 40180000 38191000 32257000 29849000 3 3 0 3 3 3 3 3 3 3 3 17821000 31488000 278990 27221000 20803000 19689000 16574000 36595000 33713000 30437000 30861000 16595000 29366000 1779300 27958000 19858000 20903000 17563000 36170000 33446000 29980000 29859000 4 4 4 4 4 4 4 4 4 4 4 4474500000 2825300000 1649300000 17047 2368 15654 86402;86403;86404;86405;86406 104531;104532;104533;104534;104535;104536;104537 104531 7 SGKPGPFLLSGSR Unmodified 1301.7092 0.70918471 1025 P43034 PAFAH1B1 Platelet-activating factor acetylhydrolase IB subunit alpha yes yes 0 0 0 1 By MS/MS 4 0 1 1 43.653 43.753 3 0.027432 11817 20211116_3431_TMUAki_TMT10x_P_F4 49.485 24.269 4097800 6221400 0 6751700 9614100 9690100 4985800 5300200 5467600 4868600 5761500 3814300 5807200 276710 6894300 9093000 9591800 5314200 5597500 5551700 4772700 5548800 1 1 0 1 1 1 1 1 1 1 1 4097800 6221400 0 6751700 9614100 9690100 4985800 5300200 5467600 4868600 5761500 3814300 5807200 276710 6894300 9093000 9591800 5314200 5597500 5551700 4772700 5548800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 292650000 292650000 0 17048 1025 15655 86407 104538 104538 1 SGKSPILVATAVAAR Unmodified 1439.846 0.84601255 104 O00571;O00571-2;O15523;O15523-2 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 0 1 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 47.826 47.748 3 4.855E-10 15130 20211116_3430_TMUAki_TMT10x_P_F3 118.24 73.474 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17049 104 15656 86408;86409;86410 104539;104540;104541 104539 3 SGKTELAEPIAIRPTSETVMYPAYAK Oxidation (M) 2838.4473 0.44734587 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 1 2 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 54.118 54.437 4 3.09E-17 15380 20211116_3447_TMUAki_TMT10x_S_F8 123.3 108.89 31403000 58483000 307650 53929000 50446000 73184000 40989000 73541000 80185000 67163000 53876000 29238000 54554000 2693200 55626000 48121000 73375000 43285000 74563000 78926000 65858000 52787000 6 6 5 6 6 6 6 6 6 6 6 18149000 33881000 30249 30739000 34390000 58025000 29521000 39816000 47327000 38541000 29421000 16895000 31603000 1296500 31988000 32824000 57020000 30751000 41363000 46732000 37694000 28936000 3 3 2 3 3 3 3 3 3 3 3 13254000 24603000 277400 23191000 16056000 15159000 11468000 33725000 32858000 28622000 24455000 12343000 22952000 1396700 23638000 15297000 16355000 12535000 33199000 32193000 28164000 23851000 3 3 3 3 3 3 3 3 3 3 3 9565000000 4503100000 5062000000 17050 542 15657 86411;86412;86413;86414 104542;104543;104544;104545;104546;104547 104546 476 6 SGKTELAEPIAIRPTSETVMYPAYAK Unmodified 2822.4524 0.45243125 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 2 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 57.669 58.081 4 2.4297E-23 16878 20211116_3447_TMUAki_TMT10x_S_F8 150.18 124.77 30085000 49466000 405030 53718000 41806000 37453000 35576000 27158000 23406000 27879000 36656000 28015000 46173000 2997200 54258000 39951000 38927000 36036000 28153000 24814000 27199000 34950000 5 5 2 5 5 5 5 5 5 5 5 12700000 20783000 405030 22211000 20902000 25051000 20072000 13197000 11112000 12761000 15979000 11828000 19399000 1545200 22600000 20046000 25079000 20126000 14003000 11870000 12481000 15263000 2 2 2 2 2 2 2 2 2 2 2 17385000 28683000 0 31507000 20904000 12402000 15504000 13960000 12294000 15118000 20677000 16187000 26775000 1451900 31658000 19905000 13848000 15909000 14150000 12945000 14718000 19687000 3 3 0 3 3 3 3 3 3 3 3 2993900000 1085200000 1908800000 17051 542 15657 86415;86416;86417 104548;104549;104550;104551;104552 104551 5 SGKWEGLVYAPPGK Unmodified 1487.7773 0.77726428 3252 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 0 1 By MS/MS 2 0 1 1 56.434 56.219 3 0.00010753 16814 20211116_3440_TMUAki_TMT10x_S_F2 91.743 66.69 4294300 7756000 39448 8408700 4067700 3691200 3052700 9706000 7517300 5821800 7596200 3998700 7239600 389620 8461600 3877100 4186500 3287800 9448600 7455000 5845900 7325400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4294300 7756000 39448 8408700 4067700 3691200 3052700 9706000 7517300 5821800 7596200 3998700 7239600 389620 8461600 3877100 4186500 3287800 9448600 7455000 5845900 7325400 1 1 1 1 1 1 1 1 1 1 1 266870000 0 266870000 17052 3252 15658 86418 104553 104553 1 SGKYDLDFK Unmodified 1071.5237 0.52367535 520 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 1 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 47.104 47.375 3 0.0017607 12400 20211116_3434_TMUAki_TMT10x_P_F6 81.525 43.803 91012000 118390000 889250 197840000 310650000 155380000 99793000 94306000 118220000 76306000 137690000 84746000 110770000 11263000 195580000 292610000 159530000 112820000 98427000 120150000 75266000 132220000 9 9 6 9 9 9 9 9 9 9 9 58934000 77263000 872890 125900000 287270000 134760000 71503000 60788000 77763000 50603000 88397000 54879000 72276000 8802200 125130000 270070000 135080000 84005000 65233000 79214000 49841000 84944000 6 6 5 6 6 6 6 6 6 6 6 32078000 41129000 16361 71941000 23377000 20613000 28290000 33518000 40455000 25703000 49289000 29867000 38493000 2460400 70448000 22533000 24455000 28815000 33194000 40937000 25425000 47274000 3 3 1 3 3 3 3 3 3 3 3 5263600000 3259000000 2004600000 17053 520 15659 86419;86420;86421;86422;86423;86424 104554;104555;104556;104557;104558;104559;104560;104561;104562 104557 9 SGKYDLDFKSPDDPSR Unmodified 1825.8483 0.84825697 520 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 2 By MS/MS By MS/MS 5.53 1.2 1 2 4 4 4 7 8 44.417 44.619 3;4 5.6577E-16 12427 20211116_3433_TMUAki_TMT10x_P_F5 159.75 144.59 189540000 284220000 1340600 384890000 359120000 307850000 183980000 386630000 434180000 269440000 327980000 176490000 265580000 18750000 384390000 339980000 320140000 203520000 385620000 426990000 267970000 319670000 21 21 10 21 21 21 21 21 21 21 21 71664000 105920000 582010 139360000 281490000 236700000 121140000 142440000 163060000 97670000 118520000 66729000 98956000 9114500 141270000 265890000 233010000 132560000 148240000 162470000 97235000 115710000 10 10 5 10 10 10 10 10 10 10 10 117880000 178300000 758570 245530000 77627000 71155000 62841000 244190000 271130000 171770000 209460000 109760000 166630000 9635900 243120000 74088000 87132000 70964000 237370000 264520000 170740000 203960000 11 11 5 11 11 11 11 11 11 11 11 59276000000 39588000000 19688000000 17054 520 15660 86425;86426;86427;86428;86429;86430;86431;86432;86433;86434;86435;86436;86437;86438;86439 104563;104564;104565;104566;104567;104568;104569;104570;104571;104572;104573;104574;104575;104576;104577;104578;104579;104580;104581;104582;104583 104565 21 SGLGELILPENEPGSSIMPGK Oxidation (M) 2140.0722 0.07218525 547 P07954;P07954-2 FH Fumarate hydratase, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 4.83 0.687 2 3 1 2 4 70.737 70.719 3;4 3.4707E-05 22013 20211116_3444_TMUAki_TMT10x_S_F5 74.698 65.875 21176000 36736000 267820 30554000 25678000 31910000 26124000 28941000 29169000 28485000 29403000 19717000 34255000 1852700 31627000 24635000 32358000 26570000 29561000 29550000 27839000 28357000 9 9 4 9 9 9 9 9 9 9 9 5877000 9290900 183820 7291000 5528400 11805000 6843100 7029400 7723200 7026700 8129300 5473100 8661900 612150 7646800 5342400 11640000 6899800 7387900 7832900 6862700 7829500 2 2 1 2 2 2 2 2 2 2 2 15299000 27445000 83999 23263000 20149000 20105000 19281000 21911000 21446000 21458000 21274000 14244000 25594000 1240600 23980000 19292000 20717000 19670000 22173000 21717000 20976000 20527000 7 7 3 7 7 7 7 7 7 7 7 3299700000 1105400000 2194300000 17055 547 15661 86440;86441;86442;86443;86444;86445 104584;104585;104586;104587;104588;104589;104590;104591;104592 104589 497 9 SGLGELILPENEPGSSIMPGK Unmodified 2124.0773 0.077270628 547 P07954;P07954-2 FH Fumarate hydratase, mitochondrial yes no 0 0 0 0 By MS/MS 5 0 1 1 77.131 77.142 3 0.0041055 24644 20211116_3444_TMUAki_TMT10x_S_F5 54.271 36.989 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17056 547 15661 86446 104593 104593 1 SGLIFYR Unmodified 854.46504 0.46503826 915 P34897;P34897-3;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 2.83 2.41 2 2 1 1 4 2 50.805 50.75 2 0.017511 14336 20211116_3428_TMUAki_TMT10x_P_F1 85.359 59.802 16656000 28676000 12714 26346000 22674000 26714000 19412000 24516000 24162000 21338000 22955000 15508000 26749000 601080 27047000 21658000 27143000 20008000 24942000 24330000 20971000 22181000 3 3 1 3 3 3 3 3 3 3 3 6424000 11382000 12714 10234000 12160000 15638000 8709000 9060400 8758500 7642200 8471600 5981300 10616000 601080 10602000 11572000 15450000 9015900 9501500 8897900 7522200 8181200 2 2 1 2 2 2 2 2 2 2 2 10232000 17294000 0 16113000 10514000 11076000 10703000 15456000 15403000 13696000 14483000 9526700 16133000 0 16446000 10086000 11693000 10992000 15441000 15432000 13448000 14000000 1 1 0 1 1 1 1 1 1 1 1 2242000000 740270000 1501800000 17057 915 15662 86447;86448;86449;86450;86451;86452 104594;104595;104596;104597;104598;104599 104594 6 SGLKKQELLEALTK Unmodified 1556.9138 0.91375776 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 2 By MS/MS 2 0 1 1 60.01 59.747 4 0.016418 19589 20211116_3429_TMUAki_TMT10x_P_F2 57.499 36.836 6629200 11886000 0 10910000 13323000 21754000 10915000 19608000 16756000 14776000 12488000 6172400 11087000 640620 11361000 12714000 21445000 11378000 19900000 16639000 14630000 12179000 1 1 0 1 1 1 1 1 1 1 1 6629200 11886000 0 10910000 13323000 21754000 10915000 19608000 16756000 14776000 12488000 6172400 11087000 640620 11361000 12714000 21445000 11378000 19900000 16639000 14630000 12179000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 983670000 983670000 0 17058 647 15663 86453 104600 104600 1 SGLLVLTTPLASLAPR Unmodified 1607.961 0.9610423 1589 Q13057;Q13057-2 COASY Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase yes no 0 0 0 0 By MS/MS By MS/MS 6 0 3 2 1 79.433 79.42 2;3 6.9041E-21 25867 20211116_3445_TMUAki_TMT10x_S_F6 166.62 126.92 7166100 12125000 27571 11078000 7910100 10685000 9394200 6053400 5424500 7156400 8899700 6672300 11310000 596770 11369000 7621400 10805000 9328400 6421400 5815500 6943900 8477600 3 3 2 3 3 3 3 3 3 3 3 4010300 6742100 27571 6175100 4035700 7207500 5179800 3485400 3228400 4199100 4827100 3734200 6289000 358530 6355100 3900100 7195200 5133800 3752900 3426400 4071700 4607000 2 2 2 2 2 2 2 2 2 2 2 3155800 5383000 0 4902800 3874300 3477500 4214400 2568000 2196100 2957300 4072600 2938100 5021100 238230 5014200 3721300 3610100 4194600 2668500 2389100 2872200 3870600 1 1 0 1 1 1 1 1 1 1 1 1378700000 735400000 643250000 17059 1589 15664 86454;86455;86456 104601;104602;104603 104603 3 SGLNQIPNRR Unmodified 1153.6316 0.63160309 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 28.52 28.417 3 0.00011935 5386 20211116_3428_TMUAki_TMT10x_P_F1 117.7 87.148 499370 822670 8226.9 747700 693830 777560 629820 537910 542700 501370 658550 465020 767360 51557 768510 664150 784900 639500 557910 560030 491170 631690 4 4 3 4 4 4 4 4 4 4 4 293570 476530 2487.8 393050 434110 551090 362590 311540 321230 288320 355910 273360 444340 28626 409240 414600 546290 370250 328150 329840 282540 342260 2 2 2 2 2 2 2 2 2 2 2 205800 346130 5739.2 354640 259720 226460 267220 226370 221460 213050 302650 191660 323010 22931 359280 249550 238610 269250 229770 230180 208620 289440 2 2 1 2 2 2 2 2 2 2 2 22884000 17031000 5853000 17060 1997 15665 86457;86458;86459;86460 104604;104605;104606;104607 104604 4 SGLPRPSAPSAGGIPVPR Unmodified 1714.9479 0.94785186 3058 Q9P270 SLAIN2 SLAIN motif-containing protein 2 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.707 1 2 1 1 3 43.014 43.004 3 0.00014917 13064 20211116_3430_TMUAki_TMT10x_P_F3 74.776 51.89 3123800 4751500 44244 6255500 4039400 3933900 2586500 4827900 5457800 4502900 4792600 2908800 4439200 296590 6240700 3838300 4170900 2788400 4853800 5403100 4411200 4643900 4 4 3 4 4 4 4 4 4 4 4 787390 1118000 13140 1510300 2130400 2130900 1192600 1210100 1311700 1011300 1258900 733230 1044700 96336 1522300 2020000 2111800 1262400 1270800 1327400 995920 1216100 2 2 2 2 2 2 2 2 2 2 2 2336400 3633500 31104 4745100 1909000 1803100 1393900 3617800 4146000 3491600 3533700 2175500 3394600 200250 4718300 1818300 2059100 1526000 3583000 4075700 3415300 3427800 2 2 1 2 2 2 2 2 2 2 2 258640000 49694000 208950000 17061 3058 15666 86461;86462;86463;86464 104608;104609;104610 104609 3 SGLSDLAESLTNDNETNS Unmodified 1865.8127 0.81265932 2462 Q96FV9 THOC1 THO complex subunit 1 yes yes 0 0 0 0 By MS/MS 2 0 1 1 75.951 75.844 3 0.093457 26070 20211116_3429_TMUAki_TMT10x_P_F2 30.107 24.828 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17062 2462 15667 86465 104611 104611 1 SGLSSPIYIDLR Unmodified 1319.7085 0.70851601 618 P11172 UMPS Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 63.427 63.991 2 8.3257E-06 21494 20211116_3446_TMUAki_TMT10x_S_F7 112.36 64.534 30182000 50233000 286560 48309000 40413000 45555000 34473000 41677000 39227000 38958000 40850000 28103000 46865000 2721300 49378000 38605000 46491000 35425000 42489000 39756000 38160000 39356000 5 5 2 5 5 5 5 5 5 5 5 12356000 19881000 202820 18854000 15939000 26576000 16119000 16495000 15794000 14837000 15883000 11505000 18547000 1119000 19423000 15291000 26371000 16331000 17230000 16085000 14559000 15319000 2 2 1 2 2 2 2 2 2 2 2 17827000 30352000 83742 29454000 24474000 18979000 18353000 25183000 23433000 24121000 24967000 16599000 28318000 1602300 29955000 23315000 20120000 19094000 25259000 23671000 23601000 24037000 3 3 1 3 3 3 3 3 3 3 3 3319900000 1848000000 1472000000 17063 618 15668 86466;86467 104612;104613;104614;104615;104616 104616 5 SGMSHEEDQLIPNLYR Oxidation (M) 1903.8734 0.87342586 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 1 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 47.788 47.473 3 3.4574E-15 13340 20211116_3440_TMUAki_TMT10x_S_F2 134.88 123.41 7814000 13760000 25520 18795000 9723000 11575000 8894700 9111100 9930200 8775100 10977000 7275200 12859000 621760 18710000 9298600 12182000 9097600 9377800 10094000 8584000 10557000 5 5 2 5 5 5 5 5 5 5 5 3972600 6042200 25520 7684400 6155100 8253600 5029400 4575100 4904300 4223700 5007500 3698800 5644200 351170 7731900 5872900 8290400 5156500 4826800 4998400 4139600 4827300 3 3 2 3 3 3 3 3 3 3 3 3841400 7718100 0 11111000 3567900 3321200 3865300 4535900 5025900 4551400 5969700 3576400 7214500 270590 10979000 3425700 3891200 3941100 4551000 5095700 4444500 5729500 2 2 0 2 2 2 2 2 2 2 2 528180000 261680000 266500000 17064 1997 15669 86468;86469;86470 104617;104618;104619;104620;104621;104622 104620 2549 6 SGMYTVAMAYCGSGNNK 2 Oxidation (M) 1841.7383 0.73825429 2575 Q99460;Q99460-2 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 2 0 By MS/MS 7 0 1 1 38.727 39.166 3 8.1831E-11 11025 20211116_3435_TMUAki_TMT10x_P_F7 123.63 113.43 191250 334930 0 347990 510990 516590 275940 253280 305130 227960 265310 178050 312570 17427 356610 483860 509950 293090 270050 307730 223680 257170 1 1 0 1 1 1 1 1 1 1 1 191250 334930 0 347990 510990 516590 275940 253280 305130 227960 265310 178050 312570 17427 356610 483860 509950 293090 270050 307730 223680 257170 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 51136000 51136000 0 17065 2575 15670 86471 104623 104623 2807;2808 1 SGMYVVIEVK Oxidation (M) 1139.5896 0.58964643 317 O75223 GGCT Gamma-glutamylcyclotransferase yes yes 0 0 1 0 By MS/MS 5.5 0.5 1 1 2 52.684 52.836 2 0.080651 14667 20211116_3444_TMUAki_TMT10x_S_F5 54.419 15.114 2973800 4939100 60661 5498000 2740300 3027300 2521600 4691100 4707300 4067600 4349900 2769400 4610800 299810 5532400 2625700 3273800 2636900 4666900 4680600 3998300 4207300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2973800 4939100 60661 5498000 2740300 3027300 2521600 4691100 4707300 4067600 4349900 2769400 4610800 299810 5532400 2625700 3273800 2636900 4666900 4680600 3998300 4207300 1 1 1 1 1 1 1 1 1 1 1 315730000 0 315730000 17066 317 15671 86472;86473 104624 104624 234 1 SGNELPLAVASTADLIR Unmodified 1725.9261 0.92611336 3304 Q9Y4W2;Q9Y4W2-2;Q9Y4W2-4 LAS1L Ribosomal biogenesis protein LAS1L yes no 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 74.099 74.079 3 0.00032902 24504 20211116_3433_TMUAki_TMT10x_P_F5 68.567 48.989 12787000 21369000 269460 19399000 14534000 24942000 16328000 18795000 15056000 19105000 16733000 11908000 19932000 1335700 20012000 13997000 24929000 16429000 19429000 15432000 18647000 16089000 6 6 6 6 6 6 6 6 6 6 6 10720000 17997000 260910 16093000 11715000 22624000 13902000 15589000 12880000 16090000 14082000 9983000 16786000 1145800 16650000 11304000 22487000 13956000 16220000 13191000 15694000 13547000 5 5 5 5 5 5 5 5 5 5 5 2067400 3371900 8551.8 3305400 2818600 2317500 2425700 3206000 2175300 3015100 2651100 1925000 3146100 189890 3362000 2693200 2441800 2473300 3209100 2240900 2952500 2542600 1 1 1 1 1 1 1 1 1 1 1 1400200000 600770000 799420000 17067 3304 15672 86474;86475;86476;86477;86478 104625;104626;104627;104628;104629;104630;104631 104627 7 SGNQFVLYR Unmodified 1082.5509 0.55089316 34;35 CON__Q2KJ62;CON__P01044-1;CON__P01045-1 no no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 44.014 44.086 2 0.00030582 11728 20211116_3436_TMUAki_TMT10x_P_F8 129.42 81.506 + 4321300 8437900 64224 7778200 11403000 9408200 5718800 9515400 12360000 7295900 8687000 4023700 7870900 477180 8006100 10792000 9486300 6303700 9602800 12154000 7217000 8493800 2 2 1 2 2 2 2 2 2 2 2 2327700 3939900 0 3868200 9269500 7440100 3765400 4864100 6057800 3771000 4333800 2167000 3676100 250080 4004700 8747100 7301200 4178200 5042800 6001300 3728000 4234000 1 1 0 1 1 1 1 1 1 1 1 1993700 4497900 64224 3910100 2133900 1968100 1953400 4651300 6302700 3524900 4353200 1856800 4194900 227110 4001400 2045400 2185100 2125500 4560000 6152400 3489000 4259700 1 1 1 1 1 1 1 1 1 1 1 250690000 152970000 97721000 17068 34;35 15673 86479;86480 104632;104633 104632 2 SGNVAELALK Unmodified 1000.5553 0.55530983 1091 P49321;P49321-3;P49321-4;P49321-2 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 50.324 50.476 2 4.6135E-06 13640 20211116_3434_TMUAki_TMT10x_P_F6 141.88 87.47 40991000 63028000 138630 69348000 72719000 67653000 44056000 51656000 56526000 47542000 58679000 38161000 58835000 3230300 70274000 68966000 68666000 46572000 53205000 57037000 46602000 56539000 7 7 1 7 7 7 7 7 7 7 7 24135000 35825000 0 39476000 57106000 52890000 28291000 29919000 33026000 27820000 34452000 22467000 33442000 1836400 40215000 53991000 52537000 30350000 31516000 33442000 27257000 33191000 4 4 0 4 4 4 4 4 4 4 4 16855000 27203000 138630 29872000 15613000 14763000 15765000 21737000 23500000 19723000 24227000 15694000 25394000 1393900 30060000 14975000 16129000 16223000 21689000 23595000 19345000 23348000 3 3 1 3 3 3 3 3 3 3 3 2789500000 1500400000 1289100000 17069 1091 15674 86481;86482;86483;86484;86485;86486 104634;104635;104636;104637;104638;104639;104640 104637 7 SGNYTVLQVVEALGSSLENPEPR Unmodified 2458.234 0.23398228 2564 Q96T76;Q96T76-9;Q96T76-8;Q96T76-5;Q96T76-7 MMS19 MMS19 nucleotide excision repair protein homolog yes no 0 0 0 0 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 82.272 82.281 3 9.6655E-57 28766 20211116_3435_TMUAki_TMT10x_P_F7 219.78 192.06 2567000 3946800 22519 3834700 2901500 3459900 3156600 2438900 2566400 2843700 3227400 2390000 3682400 196600 3914300 2787200 3524900 3170300 2543300 2660200 2760600 3092900 7 7 3 7 7 7 7 7 7 7 7 1199700 1704100 5749.4 1799300 1066400 1905200 1308300 1077100 1078700 1264400 1355100 1117000 1590500 83781 1830500 1027700 1915800 1307300 1142500 1117200 1227200 1298600 3 3 1 3 3 3 3 3 3 3 3 1367300 2242700 16770 2035300 1835100 1554700 1848400 1361800 1487800 1579300 1872300 1273000 2091900 112820 2083800 1759500 1609100 1863000 1400800 1543000 1533500 1794200 4 4 2 4 4 4 4 4 4 4 4 772510000 361550000 410960000 17070 2564 15675 86487;86488;86489;86490;86491;86492 104641;104642;104643;104644;104645;104646;104647 104642 7 SGPASTFNDR Unmodified 1050.473 0.47303677 3064 Q9P2J5;Q9P2J5-2;Q9P2J5-3 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By matching By MS/MS 2.5 0.5 1 1 1 1 30.697 30.456 2 7.7915E-05 9279 20211116_3441_TMUAki_TMT10x_S_F3 127.37 99.655 173110 309980 0 305750 163460 145020 180980 167670 197560 167630 238600 161160 289230 11503 309810 156990 158160 183170 169330 201720 163720 228900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 173110 309980 0 305750 163460 145020 180980 167670 197560 167630 238600 161160 289230 11503 309810 156990 158160 183170 169330 201720 163720 228900 1 1 0 1 1 1 1 1 1 1 1 15021000 4887100 10134000 17071 3064 15676 86493;86494 104648 104648 1 SGPASTFNDRVFASELNAGIIK Unmodified 2293.1703 0.17025981 3064 Q9P2J5;Q9P2J5-2;Q9P2J5-3 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 0 1 By MS/MS 8 0 1 1 67.804 67.924 3 1.8803E-19 21412 20211116_3436_TMUAki_TMT10x_P_F8 146.39 117.98 5841900 9219200 0 8687700 5823700 13088000 7016400 9214200 8686000 7928400 8108000 5439300 8600500 474560 8966200 5613400 12975000 7106300 9525400 8743000 7796300 7839400 2 2 0 2 2 2 2 2 2 2 2 5841900 9219200 0 8687700 5823700 13088000 7016400 9214200 8686000 7928400 8108000 5439300 8600500 474560 8966200 5613400 12975000 7106300 9525400 8743000 7796300 7839400 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 880540000 880540000 0 17072 3064 15677 86495 104649;104650 104649 2 SGPDVETPSAIQICR Acetyl (Protein N-term) 1670.7934 0.79338463 64 O00154-4;O00154-2;O00154-3 ACOT7 Cytosolic acyl coenzyme A thioester hydrolase yes no 1 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 56.129 55.9 2 1.3169E-33 16707 20211116_3440_TMUAki_TMT10x_S_F2 185.96 166.17 9113500 16247000 188930 15612000 13589000 16497000 11820000 14157000 13675000 13386000 13884000 8486900 15158000 977340 15985000 12996000 16699000 12139000 14489000 13839000 13106000 13387000 7 7 5 7 7 7 7 7 7 7 7 3893100 7017800 55392 6806200 7621100 10954000 6835600 6184400 6101000 5885000 6094200 3625100 6547500 412610 7020400 7290200 10796000 6952000 6519600 6238600 5760000 5879000 3 3 2 3 3 3 3 3 3 3 3 5220500 9229100 133540 8805600 5968100 5542700 4984200 7973000 7574500 7501300 7790300 4861800 8610100 564730 8964300 5705700 5902400 5187400 7969700 7600000 7345600 7508300 4 4 3 4 4 4 4 4 4 4 4 3847600000 2340300000 1507300000 17073 64 15678 86496;86497;86498;86499;86500;86501 104651;104652;104653;104654;104655;104656;104657 104656 7 SGPFAPVLSATSR Unmodified 1288.6776 0.67755023 1067 P47985;P0C7P4 UQCRFS1;UQCRFS1P1 Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11;Putative cytochrome b-c1 complex subunit Rieske-like protein 1 yes no 0 0 0 0 By MS/MS 2 0 1 1 54.164 53.915 2 0.074274 17184 20211116_3429_TMUAki_TMT10x_P_F2 50.354 27.311 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17074 1067 15679 86502 104658 104658 1 SGPFGQIFRPDNFVFGQSGAGNNWAK Unmodified 2797.3361 0.33609636 1418;1668;2689;539;488 P07437;P68371;Q13885;Q9BVA1;P04350 TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB4A Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain no no 0 0 0 1 By MS/MS By MS/MS 5.84 0.975 1 12 35 47 40 74 61 59.669 59.717 2;3;4;5 4.4966E-88 27671 20211116_3434_TMUAki_TMT10x_P_F6 267.71 245.58 656360000 1095900000 5960400 1052700000 790980000 775230000 910910000 287490000 225090000 356640000 701090000 611170000 1022500000 60138000 1072800000 761690000 795900000 896470000 318990000 275890000 345470000 661580000 166 166 91 166 166 166 166 166 166 166 166 410260000 679860000 4819400 643340000 446250000 564030000 571270000 174110000 135410000 220100000 423960000 382020000 634240000 38464000 657700000 431290000 570730000 559430000 198080000 167070000 213070000 400050000 91 91 49 91 91 91 91 91 91 91 91 246100000 416060000 1141000 409330000 344720000 211200000 339640000 113380000 89680000 136540000 277130000 229150000 388210000 21674000 415100000 330400000 225180000 337040000 120910000 108820000 132400000 261530000 75 75 42 75 75 75 75 75 75 75 75 297910000000 144580000000 153330000000 17075 539;1418;1668;2689;488 15680 86503;86504;86505;86506;86507;86508;86509;86510;86511;86512;86513;86514;86515;86516;86517;86518;86519;86520;86521;86522;86523;86524;86525;86526;86527;86528;86529;86530;86531;86532;86533;86534;86535;86536;86537;86538;86539;86540;86541;86542;86543;86544;86545;86546;86547;86548;86549;86550;86551;86552;86553;86554;86555;86556;86557;86558;86559;86560;86561;86562;86563;86564;86565;86566;86567;86568;86569;86570;86571;86572;86573;86574;86575;86576;86577;86578;86579;86580;86581;86582;86583;86584;86585;86586;86587;86588;86589;86590;86591;86592;86593;86594;86595;86596;86597;86598;86599;86600;86601;86602;86603;86604;86605;86606;86607;86608;86609;86610;86611;86612;86613;86614;86615;86616;86617;86618;86619;86620;86621;86622;86623;86624;86625;86626;86627;86628;86629;86630;86631;86632;86633;86634;86635;86636;86637 104659;104660;104661;104662;104663;104664;104665;104666;104667;104668;104669;104670;104671;104672;104673;104674;104675;104676;104677;104678;104679;104680;104681;104682;104683;104684;104685;104686;104687;104688;104689;104690;104691;104692;104693;104694;104695;104696;104697;104698;104699;104700;104701;104702;104703;104704;104705;104706;104707;104708;104709;104710;104711;104712;104713;104714;104715;104716;104717;104718;104719;104720;104721;104722;104723;104724;104725;104726;104727;104728;104729;104730;104731;104732;104733;104734;104735;104736;104737;104738;104739;104740;104741;104742;104743;104744;104745;104746;104747;104748;104749;104750;104751;104752;104753;104754;104755;104756;104757;104758;104759;104760;104761;104762;104763;104764;104765;104766;104767;104768;104769;104770;104771;104772;104773;104774;104775;104776;104777;104778;104779;104780;104781;104782;104783;104784;104785;104786;104787;104788;104789;104790;104791;104792;104793;104794;104795;104796;104797;104798;104799;104800;104801;104802;104803;104804;104805;104806;104807;104808;104809;104810;104811;104812;104813;104814;104815;104816;104817;104818;104819;104820;104821;104822;104823;104824;104825;104826;104827;104828;104829;104830;104831;104832;104833;104834;104835 104706 177 SGPKPFSAPKPQTSPSPK Unmodified 1836.9734 0.9733979 1482 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 yes no 0 0 0 2 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 37.224 37.112 4 5.9525E-17 9218 20211116_3431_TMUAki_TMT10x_P_F4 141.83 124.55 6262600 9828900 56736 11291000 28811000 19253000 10603000 9970300 12560000 7853200 11641000 5831100 9176900 832190 11534000 27167000 18914000 11767000 10542000 12660000 7757100 11259000 5 5 3 5 5 5 5 5 5 5 5 5472100 8436700 51682 9768500 28038000 18563000 9814900 8842400 11031000 6833000 10139000 5095000 7877400 762180 10003000 26425000 18150000 10946000 9420700 11137000 6756300 9807900 4 4 2 4 4 4 4 4 4 4 4 790580 1392200 5053.8 1522400 773170 689970 787650 1128000 1529500 1020200 1502900 736140 1299500 70010 1531500 742020 764090 821160 1121500 1522600 1000800 1450600 1 1 1 1 1 1 1 1 1 1 1 405720000 354470000 51246000 17076 1482 15681 86638;86639 104836;104837;104838;104839;104840 104838 5 SGPLFNFDVHDDVR Unmodified 1616.7583 0.75831975 1705 Q14320 FAM50A Protein FAM50A yes yes 0 0 0 0 By MS/MS By MS/MS 4.29 1.03 2 2 2 1 3 4 57.997 57.967 3 3.8519E-19 17607 20211116_3431_TMUAki_TMT10x_P_F4 167.61 148.29 19357000 31388000 254080 33407000 23807000 27571000 21923000 23724000 21685000 20580000 25816000 18025000 29296000 1897400 33851000 22795000 28361000 22329000 24221000 22217000 20229000 24776000 7 7 6 7 7 7 7 7 7 7 7 8241700 12948000 76130 13218000 12204000 17328000 10717000 10251000 9493100 9374300 11078000 7674400 12083000 803260 13527000 11668000 17240000 10911000 10754000 9767400 9191500 10638000 3 3 2 3 3 3 3 3 3 3 3 11115000 18440000 177950 20190000 11604000 10243000 11206000 13473000 12191000 11206000 14738000 10350000 17213000 1094200 20324000 11127000 11121000 11418000 13468000 12450000 11037000 14138000 4 4 4 4 4 4 4 4 4 4 4 4285000000 2408500000 1876500000 17077 1705 15682 86640;86641;86642;86643;86644;86645;86646 104841;104842;104843;104844;104845;104846;104847 104841 7 SGPNIYELR Unmodified 1047.5349 0.53490874 320 O75323;O75323-2 GBAS Protein NipSnap homolog 2 yes no 0 0 0 0 By MS/MS 5 0 1 1 42.908 43.041 2 0.033725 10743 20211116_3444_TMUAki_TMT10x_S_F5 59.153 27.849 3730300 6787500 19679 8417200 3190200 2286500 2923700 5130600 4934200 4288000 5884800 3473400 6339600 320040 8380200 3053400 2771400 3041800 5047700 4965400 4222600 5647400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3730300 6787500 19679 8417200 3190200 2286500 2923700 5130600 4934200 4288000 5884800 3473400 6339600 320040 8380200 3053400 2771400 3041800 5047700 4965400 4222600 5647400 1 1 1 1 1 1 1 1 1 1 1 168560000 0 168560000 17078 320 15683 86647 104848 104848 1 SGPPAPEEEEEEERQSGNTEQK Unmodified 2456.0575 0.057534057 2945 Q9NTI5;Q9NTI5-2;Q9NTI5-5 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 0 0 0 1 By MS/MS By matching 1 0 3 2 1 31.932 31.942 3;4 1.2957E-55 6779 20211116_3428_TMUAki_TMT10x_P_F1 227.6 213.87 139330 213830 1162.4 292450 1063100 429990 233850 216400 330410 141440 287600 129730 199820 24673 294850 998550 424760 283560 228550 330390 141220 278760 2 2 1 2 2 2 2 2 2 2 2 139330 213830 1162.4 292450 1063100 429990 233850 216400 330410 141440 287600 129730 199820 24673 294850 998550 424760 283560 228550 330390 141220 278760 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35440000 29168000 6272000 17079 2945 15684 86648;86649;86650 104849;104850 104850 2 SGPPGEEAQVASQFIADVIENSQIIQK Unmodified 2854.4349 0.43486693 2414 Q96B26 EXOSC8 Exosome complex component RRP43 yes yes 0 0 0 0 By MS/MS By MS/MS 6 1.1 1 2 2 2 3 82.915 82.922 3;4 1.443E-33 27308 20211116_3445_TMUAki_TMT10x_S_F6 176.1 153.44 2161900 3547600 50148 3373600 2361300 3121100 2492000 2146100 2002500 2234100 2668500 2013300 3309600 221490 3450100 2270000 3173300 2505700 2233900 2082300 2178300 2553500 5 5 2 5 5 5 5 5 5 5 5 1089900 1791000 30281 1566800 1069500 1959700 1165400 1120100 1033800 1193300 1266500 1015100 1670300 118300 1620100 1029800 1953300 1173000 1183400 1065700 1162400 1214500 1 1 1 1 1 1 1 1 1 1 1 1072000 1756700 19867 1806700 1291800 1161500 1326600 1026000 968730 1040900 1402000 998190 1639300 103190 1830000 1240200 1220000 1332700 1050400 1016500 1016000 1339000 4 4 1 4 4 4 4 4 4 4 4 422980000 170260000 252730000 17080 2414 15685 86651;86652;86653;86654;86655 104851;104852;104853;104854;104855 104853 5 SGPSVPVSVQTKDDVYEAFMK Unmodified 2283.1093 0.10929904 3253 Q9Y2W2 WBP11 WW domain-binding protein 11 yes yes 0 0 0 1 By MS/MS 7 0 1 1 71.779 72.12 3 8.0076E-08 24462 20211116_3435_TMUAki_TMT10x_P_F7 91.64 77.33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17081 3253 15686 86656 104856 104856 1 SGPVKLEFDVSDGATSK Unmodified 1735.8628 0.8628444 3345 Q9Y6A5 TACC3 Transforming acidic coiled-coil-containing protein 3 yes yes 0 0 0 1 By MS/MS 6 0 1 1 54.369 54.474 3 0.013691 15648 20211116_3445_TMUAki_TMT10x_S_F6 49.768 30.936 6003000 10459000 34743 10788000 6661300 5734200 5623300 8418900 8494200 7980100 8890800 5589600 9760900 539290 10907000 6363200 6213600 5847100 8411200 8529900 7811900 8564300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6003000 10459000 34743 10788000 6661300 5734200 5623300 8418900 8494200 7980100 8890800 5589600 9760900 539290 10907000 6363200 6213600 5847100 8411200 8529900 7811900 8564300 1 1 1 1 1 1 1 1 1 1 1 635350000 0 635350000 17082 3345 15687 86657 104857 104857 1 SGQGAFGNMCR Oxidation (M) 1199.4812 0.48117539 953 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 1 0 By MS/MS 4.5 0.5 1 1 2 28.318 28.305 2 0.086878 5666 20211116_3431_TMUAki_TMT10x_P_F4 52.79 48.855 199020 340260 3943.8 386340 710670 400450 274950 150330 183840 159580 293390 185310 317670 24705 391090 670540 401460 298860 165740 194900 155470 279630 2 2 1 2 2 2 2 2 2 2 2 199020 340260 3943.8 386340 710670 400450 274950 150330 183840 159580 293390 185310 317670 24705 391090 670540 401460 298860 165740 194900 155470 279630 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19216000 19216000 0 17083 953 15688 86658;86659 104858;104859 104858 1211 2 SGQKPVLDVHAELDR Unmodified 1662.8689 0.86893283 3350 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 2 4 4 2 39.634 39.704 3;4 2.2323E-05 10564 20211116_3433_TMUAki_TMT10x_P_F5 98.796 76.263 15372000 22605000 349170 26913000 27510000 24614000 17089000 14910000 14504000 13339000 20188000 14315000 21109000 1762500 27117000 26137000 24999000 17799000 15602000 15070000 13092000 19298000 6 6 5 6 6 6 6 6 6 6 6 12452000 18583000 281680 21213000 24817000 22021000 14289000 11621000 11720000 10477000 15961000 11596000 17350000 1460700 21467000 23547000 22150000 14965000 12306000 12186000 10279000 15265000 5 5 4 5 5 5 5 5 5 5 5 2920200 4022100 67495 5699500 2693300 2593100 2799300 3289000 2783800 2862100 4226800 2719500 3759300 301830 5649500 2589200 2848900 2833400 3296200 2883900 2812900 4032800 1 1 1 1 1 1 1 1 1 1 1 1425700000 1025800000 399860000 17084 3350 15689 86660;86661;86662;86663;86664;86665 104860;104861;104862;104863;104864 104862 5 SGQQIVGPPR Unmodified 1037.5618 0.56179219 3203 Q9UNZ2;Q9UNZ2-5;Q9UNZ2-4 NSFL1C NSFL1 cofactor p47 yes no 0 0 0 0 By MS/MS 5 0 1 1 31.744 31.683 2 0.004572 7402 20211116_3433_TMUAki_TMT10x_P_F5 77.662 49.488 266740 458350 5965.8 506150 745440 719600 407540 422710 451810 370230 444660 248410 427860 34379 516170 706630 713240 432430 443190 457450 363750 429170 1 1 1 1 1 1 1 1 1 1 1 266740 458350 5965.8 506150 745440 719600 407540 422710 451810 370230 444660 248410 427860 34379 516170 706630 713240 432430 443190 457450 363750 429170 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18789000 18789000 0 17085 3203 15690 86666 104865 104865 1 SGQSALYDALFSSQSPK Unmodified 1784.8581 0.85809337 1122 P49792;Q7Z3J3 RANBP2;RGPD4 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 4 no no 0 0 0 0 By MS/MS 8 0 1 1 70.911 70.739 3 0.00029075 22111 20211116_3447_TMUAki_TMT10x_S_F8 70.335 52.418 4158200 7261100 100750 6651200 5101700 5352100 5163900 5343900 5715700 5874600 6302700 3872400 6773100 451850 6809000 4899400 5532300 5251800 5449600 5811400 5715600 6061800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4158200 7261100 100750 6651200 5101700 5352100 5163900 5343900 5715700 5874600 6302700 3872400 6773100 451850 6809000 4899400 5532300 5251800 5449600 5811400 5715600 6061800 1 1 1 1 1 1 1 1 1 1 1 853600000 0 853600000 17086 1122 15691 86667 104866 104866 1 SGQVYSFGCNDEGALGR Unmodified 1815.7846 0.78461086 723 P18754;P18754-2 RCC1 Regulator of chromosome condensation yes no 0 0 0 0 By MS/MS 4 0 1 1 48.88 49.036 3 4.7497E-11 14005 20211116_3431_TMUAki_TMT10x_P_F4 129.36 124.66 3530300 6174900 196510 6370300 7645700 8348900 4964400 5063300 5383000 4292500 5595000 3288500 5762600 533460 6514500 7275600 8309500 5188700 5290700 5465500 4224100 5390700 2 2 2 2 2 2 2 2 2 2 2 3530300 6174900 196510 6370300 7645700 8348900 4964400 5063300 5383000 4292500 5595000 3288500 5762600 533460 6514500 7275600 8309500 5188700 5290700 5465500 4224100 5390700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 478950000 478950000 0 17087 723 15692 86668 104867;104868 104868 2 SGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEK Oxidation (M) 3874.7626 0.76256137 723 P18754;P18754-2 RCC1 Regulator of chromosome condensation yes no 0 0 1 2 By MS/MS 4 0 1 1 58.284 58.194 4 3.3264E-12 18246 20211116_3442_TMUAki_TMT10x_S_F4 101.34 96.184 1343600 2445900 13648 2269900 2309100 1683500 1334600 2810200 2670100 2484700 2051300 1251100 2281600 137640 2319300 2190400 1776600 1446000 2790600 2636000 2440100 1998000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1343600 2445900 13648 2269900 2309100 1683500 1334600 2810200 2670100 2484700 2051300 1251100 2281600 137640 2319300 2190400 1776600 1446000 2790600 2636000 2440100 1998000 1 1 1 1 1 1 1 1 1 1 1 413210000 0 413210000 17088 723 15693 86669 104869 104869 832 1 SGRDLINLAK Unmodified 1085.6193 0.61930707 765 P22087 FBL rRNA 2'-O-methyltransferase fibrillarin yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 43.966 44.039 3 0.00050226 11174 20211116_3447_TMUAki_TMT10x_S_F8 97.163 42.613 3008100 4699200 115050 5328400 5682300 4886900 3661900 4320000 4992200 3552000 4614400 2801700 4387200 394070 5384800 5404600 4992900 3861300 4397900 5007100 3500700 4463000 2 2 2 2 2 2 2 2 2 2 2 1667700 2628100 73665 2931200 4156000 3824800 2430000 2468700 2992100 2008900 2492000 1553400 2453500 241770 2982300 3946100 3810800 2572500 2564600 3001600 1980900 2419400 1 1 1 1 1 1 1 1 1 1 1 1340300 2071100 41390 2397200 1526300 1062100 1231900 1851300 2000100 1543100 2122400 1248300 1933800 152300 2402500 1458600 1182100 1288800 1833200 2005500 1519800 2043600 1 1 1 1 1 1 1 1 1 1 1 403270000 287280000 115980000 17089 765 15694 86670;86671 104870;104871 104871 2 SGSGTMNLGGSLTR Unmodified 1336.6405 0.6405128 1063 P47756-2;P47756 CAPZB F-actin-capping protein subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 7.4 0.49 3 2 2 3 37.158 37.552 2 7.8672E-91 11168 20211116_3435_TMUAki_TMT10x_P_F7 333.25 291.81 585120 854430 1055.6 1394300 954180 507650 515130 338900 264170 313460 737440 544760 799290 47995 1371000 903510 568050 537710 352330 296520 307190 696730 3 3 1 3 3 3 3 3 3 3 3 225810 354340 1055.6 475600 718010 366360 265690 154590 128340 128500 275660 210260 331090 26599 474990 677150 375200 288900 167080 141800 126570 261360 1 1 1 1 1 1 1 1 1 1 1 359310 500090 0 918700 236180 141290 249440 184310 135830 184960 461770 334500 468200 21396 896030 226360 192850 248810 185240 154720 180620 435370 2 2 0 2 2 2 2 2 2 2 2 78160000 46863000 31296000 17090 1063 15695 86672;86673;86674;86675;86676 104872;104873;104874;104875;104876 104872 5 SGSGTMNLGGSLTR Oxidation (M) 1352.6354 0.63542742 1063 P47756-2;P47756 CAPZB F-actin-capping protein subunit beta yes no 0 0 1 0 By MS/MS By MS/MS 8 0 2 1 1 32.782 33.186 2 0.00085042 6739 20211116_3447_TMUAki_TMT10x_S_F8 81.625 66.01 93686 118650 0 241050 155980 80635 94128 41351 30770 43387 116230 87205 111170 5357.6 234870 147800 91158 96751 44087 37108 42290 109480 2 2 0 2 2 2 2 2 2 2 2 45041 58911 0 104890 122330 58755 55520 24018 17977 17086 56918 41914 55142 1846.3 103070 115420 61921 58648 25965 21313 16973 53701 1 1 0 1 1 1 1 1 1 1 1 48645 59740 0 136160 33656 21880 38608 17334 12793 26301 59316 45291 56029 3511.3 131800 32375 29237 38104 18122 15795 25318 55780 1 1 0 1 1 1 1 1 1 1 1 6603900 2904100 3699800 17091 1063 15695 86677;86678 104877;104878 104878 1385 2 SGSKFPVFNMSYNPAENAVLLCTR Oxidation (M) 2717.2942 0.29415647 1207 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 1 1 By MS/MS By MS/MS 3 0 3 1 2 70.42 70.061 3;4 2.5877E-12 24285 20211116_3430_TMUAki_TMT10x_P_F3 120.54 114.03 7637100 13441000 7696 9767100 9673100 15255000 9616200 11765000 11196000 11595000 10930000 7110300 12528000 587500 10306000 9268800 15124000 9806000 12133000 11311000 11331000 10552000 5 5 1 5 5 5 5 5 5 5 5 4553800 7924300 0 5529400 4793900 10952000 5486000 6999400 6866600 6965500 6473800 4239500 7385300 316680 5891100 4609900 10734000 5571200 7314900 6911200 6804200 6257200 3 3 0 3 3 3 3 3 3 3 3 3083400 5516200 7696 4237800 4879200 4303100 4130200 4765300 4329100 4629700 4456100 2870800 5142400 270810 4414500 4658900 4390000 4234700 4817600 4399900 4527200 4294700 2 2 1 2 2 2 2 2 2 2 2 1812700000 483440000 1329200000 17092 1207 15696 86679;86680;86681 104879;104880;104881;104882;104883 104881 1623 5 SGSLENVPNVGVNK Unmodified 1412.726 0.72595699 1195 P53004 BLVRA Biliverdin reductase A yes yes 0 0 0 0 By MS/MS 5 0 1 1 47.772 47.944 3 0.041549 13842 20211116_3433_TMUAki_TMT10x_P_F5 39.509 17.952 4255400 5956800 66068 9762600 12924000 10918000 6156000 4839000 5918300 4825500 5934000 3962700 5572500 535780 9708000 12226000 10914000 6590800 5226300 6031800 4713400 5723900 1 1 1 1 1 1 1 1 1 1 1 4255400 5956800 66068 9762600 12924000 10918000 6156000 4839000 5918300 4825500 5934000 3962700 5572500 535780 9708000 12226000 10914000 6590800 5226300 6031800 4713400 5723900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 308290000 308290000 0 17093 1195 15697 86682 104884 104884 1 SGSMATAEASGSDGKGQEVETSVTYYR Acetyl (Protein N-term);Oxidation (M) 2825.2298 0.22976112 199 O43169 CYB5B Cytochrome b5 type B yes yes 1 0 1 1 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 47.096 46.941 3 1.2327E-120 15997 20211116_3441_TMUAki_TMT10x_S_F3 217.94 211.22 9482600 17038000 13626 14561000 12305000 20891000 11838000 17606000 19224000 17266000 14855000 8828300 15889000 711750 15124000 11780000 20818000 12261000 18056000 19079000 16877000 14465000 14 14 3 14 14 14 14 14 14 14 14 5838400 10063000 1864.9 8672300 7502000 15597000 7646100 10410000 11216000 10265000 8600200 5435700 9384800 450610 9049000 7193200 15346000 7858700 10842000 11161000 10032000 8377300 8 8 2 8 8 8 8 8 8 8 8 3644200 6974800 11762 5888800 4803200 5293300 4192300 7196200 8008100 7000500 6254300 3392600 6504100 261140 6075300 4586500 5471900 4402500 7214700 7917700 6845100 6087600 6 6 1 6 6 6 6 6 6 6 6 2045000000 869640000 1175300000 17094 199 15698 86683;86684;86685;86686;86687;86688 104885;104886;104887;104888;104889;104890;104891;104892;104893;104894;104895;104896;104897;104898 104898 158 14 SGSMATAEASGSDGKGQEVETSVTYYR Acetyl (Protein N-term) 2809.2348 0.2348465 199 O43169 CYB5B Cytochrome b5 type B yes yes 1 0 0 1 By MS/MS 2.5 0.5 1 1 2 52.517 52.247 3 8.8352E-78 15130 20211116_3440_TMUAki_TMT10x_S_F2 172.8 165.69 550920 905720 6443.8 913910 556290 470250 553170 374840 321610 393670 638250 513010 845160 51756 925120 533710 504280 554100 386490 348550 383700 605890 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 550920 905720 6443.8 913910 556290 470250 553170 374840 321610 393670 638250 513010 845160 51756 925120 533710 504280 554100 386490 348550 383700 605890 1 1 1 1 1 1 1 1 1 1 1 336010000 0 336010000 17095 199 15698 86689;86690 104899 104899 1 SGSSVSSR Unmodified 765.3617 0.3616954 2244 Q8NEY8-3;Q8NEY8;Q8NEY8-2;Q8NEY8-5;Q8NEY8-6;Q8NEY8-9;Q8NEY8-8 PPHLN1 Periphilin-1 yes no 0 0 0 0 By MS/MS 3 0 1 1 33.981 33.96 2 0.10901 9411 20211116_3430_TMUAki_TMT10x_P_F3 46.37 0 376540 630230 0 671240 870240 884310 490790 547820 608430 501130 549030 350590 588220 36891 685070 824800 880170 521310 572570 611710 491350 531460 1 1 0 1 1 1 1 1 1 1 1 376540 630230 0 671240 870240 884310 490790 547820 608430 501130 549030 350590 588220 36891 685070 824800 880170 521310 572570 611710 491350 531460 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 59998000 59998000 0 17096 2244 15699 86691 104900 104900 1 SGSWAAIYQDIR Unmodified 1365.6677 0.66771383 713 P18031 PTPN1 Tyrosine-protein phosphatase non-receptor type 1 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 63.67 64.126 2 0.034044 21629 20211116_3446_TMUAki_TMT10x_S_F7 56.551 35.178 7549400 13255000 125210 13096000 8322600 8297400 7609800 9987700 8958200 9156900 10670000 7030100 12368000 738700 13299000 7968800 8786800 7798000 10045000 9115200 8977300 10240000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7549400 13255000 125210 13096000 8322600 8297400 7609800 9987700 8958200 9156900 10670000 7030100 12368000 738700 13299000 7968800 8786800 7798000 10045000 9115200 8977300 10240000 2 2 1 2 2 2 2 2 2 2 2 425990000 0 425990000 17097 713 15700 86692;86693 104901;104902;104903 104902 3 SGTAETEPVEQDSSQPSLPLVR Unmodified 2326.1288 0.12884851 1573 Q12888;Q12888-3;Q12888-2 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 0 0 By MS/MS 2 0 1 1 52.498 52.244 3 0.044423 16504 20211116_3429_TMUAki_TMT10x_P_F2 36.166 23.806 2074900 4965900 0 3878800 3271200 4726600 2826500 2834600 2959200 2020300 3617100 1931700 4629600 166530 4046500 3124000 4720300 2894400 2953100 3028000 2006700 3468900 1 1 0 1 1 1 1 1 1 1 1 2074900 4965900 0 3878800 3271200 4726600 2826500 2834600 2959200 2020300 3617100 1931700 4629600 166530 4046500 3124000 4720300 2894400 2953100 3028000 2006700 3468900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 223450000 223450000 0 17098 1573 15701 86694 104904 104904 1 SGTLACTGSLVNNTANDR Unmodified 1849.8588 0.85883843 43 CON__P15636 yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 3 1 40.225 40.388 3 2.6719E-16 11142 20211116_3433_TMUAki_TMT10x_P_F5 143.83 127.74 + 885540 1350900 61539 1845400 593620 604520 509310 582340 615070 564300 850080 824990 1262400 126680 1829200 570800 691890 524300 592670 629440 551870 812760 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 885540 1350900 61539 1845400 593620 604520 509310 582340 615070 564300 850080 824990 1262400 126680 1829200 570800 691890 524300 592670 629440 551870 812760 2 2 2 2 2 2 2 2 2 2 2 106870000 0 106870000 17099 43 15702 86695;86696;86697;86698 104905;104906;104907;104908;104909 104905 5 SGTLACTGSLVNNTANDRK Unmodified 1977.9538 0.95380145 43 CON__P15636 yes yes 0 0 0 1 By MS/MS 7 0.707 1 2 1 4 23.949 24.053 3;4 1.1383E-63 5281 20211116_3435_TMUAki_TMT10x_P_F7 267.39 207.82 + 4932300 6936800 30846 9360200 31352000 20286000 9497500 9230000 11799000 6266400 10163000 4592300 6481800 754340 9541100 29511000 19744000 10848000 9853700 11845000 6242100 9854400 7 7 2 7 7 7 7 7 7 7 7 4932300 6936800 30846 9360200 31352000 20286000 9497500 9230000 11799000 6266400 10163000 4592300 6481800 754340 9541100 29511000 19744000 10848000 9853700 11845000 6242100 9854400 7 7 2 7 7 7 7 7 7 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1694000000 1694000000 0 17100 43 15703 86699;86700;86701;86702 104910;104911;104912;104913;104914;104915;104916 104912 7 SGTLALVEPLVASLDPGR Unmodified 1793.9887 0.98871362 2017 Q6SZW1;Q6SZW1-2 SARM1 Sterile alpha and TIR motif-containing protein 1 yes no 0 0 0 0 By matching By MS/MS 7.67 0.471 1 2 1 2 80.166 80.177 3 2.0411E-05 25886 20211116_3447_TMUAki_TMT10x_S_F8 81.723 66.521 2046900 3934500 49651 3887700 2744800 2643400 3042100 2204300 2547200 2401700 2991200 1906300 3671100 225750 3950800 2642400 2759800 3054900 2269200 2628700 2337500 2871800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2046900 3934500 49651 3887700 2744800 2643400 3042100 2204300 2547200 2401700 2991200 1906300 3671100 225750 3950800 2642400 2759800 3054900 2269200 2628700 2337500 2871800 2 2 2 2 2 2 2 2 2 2 2 806820000 183090000 623730000 17101 2017 15704 86703;86704;86705 104917;104918 104918 2 SGTNLDGNDEFDEQLR Acetyl (Protein N-term) 1850.7919 0.7918643 239 O43719 HTATSF1 HIV Tat-specific factor 1 yes yes 1 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 57.105 57.105 2 1.1582E-46 16919 20211116_3428_TMUAki_TMT10x_P_F1 229.72 212.49 484210 765360 10196 943580 812890 1263700 744140 844710 741550 691230 892990 450920 714830 54250 954800 778330 1258200 758330 875400 759880 681410 856740 1 1 1 1 1 1 1 1 1 1 1 484210 765360 10196 943580 812890 1263700 744140 844710 741550 691230 892990 450920 714830 54250 954800 778330 1258200 758330 875400 759880 681410 856740 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 316880000 316880000 0 17102 239 15705 86706;86707 104919;104920 104919 2 SGTQDIQPGPLFNNNADGVATDITSTR Unmodified 2788.3264 0.32637912 2071 Q7Z2W4;Q7Z2W4-3;Q7Z2W4-2 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 0 0 0 0 By MS/MS 4 0 1 1 65.43 65.524 3 8.8913E-09 20739 20211116_3431_TMUAki_TMT10x_P_F4 86.48 79.83 891300 1601200 7472.3 1237200 1043900 1751600 999950 1026400 1000600 913270 952320 829940 1492700 82995 1295500 1000200 1736400 1016600 1076700 1016200 896610 920160 1 1 1 1 1 1 1 1 1 1 1 891300 1601200 7472.3 1237200 1043900 1751600 999950 1026400 1000600 913270 952320 829940 1492700 82995 1295500 1000200 1736400 1016600 1076700 1016200 896610 920160 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 118620000 118620000 0 17103 2071 15706 86708 104921 104921 1 SGTTPKPVINSTPGR Unmodified 1510.8104 0.81035532 2574 Q99459 CDC5L Cell division cycle 5-like protein yes yes 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 32.692 32.628 3 4.7655E-14 8972 20211116_3439_TMUAki_TMT10x_S_F1 142.13 119.94 1162100 1970400 0 1919000 2286000 2044300 1568300 1202100 1383800 1159000 1686700 1082000 1838400 106580 1963200 2173500 2056000 1622600 1263400 1426600 1133800 1617700 3 3 0 3 3 3 3 3 3 3 3 721000 1205600 0 1184300 1803300 1572500 967230 771020 856940 740160 1058900 671280 1124900 69638 1215500 1707700 1560000 1021400 823440 883780 724150 1015200 2 2 0 2 2 2 2 2 2 2 2 441080 764790 0 734760 482750 471880 601050 431100 526840 418880 627810 410690 713520 36941 747770 465840 496020 601190 440000 542800 409610 602500 1 1 0 1 1 1 1 1 1 1 1 135890000 96689000 39205000 17104 2574 15707 86709;86710;86711 104922;104923;104924 104924 3 SGTTSESGALSLEPSHIGDLQK Unmodified 2213.0812 0.081170032 2079 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 yes yes 0 0 0 0 By MS/MS 4 0 1 1 52.445 52.611 3 1.4459E-19 15476 20211116_3431_TMUAki_TMT10x_P_F4 145.05 128.74 1227200 1942800 0 2357100 2289300 3159200 1695600 1527500 1737800 1590800 1690100 1142600 1814400 110100 2387400 2179700 3132200 1752300 1637300 1764400 1551000 1631800 1 1 0 1 1 1 1 1 1 1 1 1227200 1942800 0 2357100 2289300 3159200 1695600 1527500 1737800 1590800 1690100 1142600 1814400 110100 2387400 2179700 3132200 1752300 1637300 1764400 1551000 1631800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 309760000 309760000 0 17105 2079 15708 86712 104925 104925 1 SGVAITFLTK Unmodified 1035.5964 0.59644637 2677 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 65.16 64.927 2 7.9381E-08 21722 20211116_3429_TMUAki_TMT10x_P_F2 123.86 74.767 8286600 14585000 67973 13254000 10280000 9620600 9667200 10729000 10029000 10538000 11577000 7716200 13604000 778290 13561000 9846000 10050000 9849100 10847000 10242000 10300000 11120000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8286600 14585000 67973 13254000 10280000 9620600 9667200 10729000 10029000 10538000 11577000 7716200 13604000 778290 13561000 9846000 10050000 9849100 10847000 10242000 10300000 11120000 2 2 2 2 2 2 2 2 2 2 2 274140000 0 274140000 17106 2677 15709 86713;86714 104926;104927;104928 104926 3 SGVGNIFIK Unmodified 933.52837 0.5283668 634 P11940;P11940-2;Q4VXU2;Q4VXU2-2;Q96DU9;Q96DU9-2 PABPC1;PABPC1L;PABPC5 Polyadenylate-binding protein 1;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 5 yes no 0 0 0 0 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 56.216 56.101 2 0.00032586 18600 20211116_3439_TMUAki_TMT10x_S_F1 128.38 37.315 57317000 90027000 304960 108420000 83432000 84642000 55653000 73990000 79334000 68079000 75162000 53367000 84073000 5116100 108950000 79300000 87455000 58636000 75589000 79524000 66733000 72635000 6 6 3 6 6 6 6 6 6 6 6 27058000 41662000 222370 50671000 58573000 62166000 33670000 35454000 39549000 32783000 36447000 25195000 38909000 2849000 51228000 55547000 62022000 35637000 37316000 39867000 32128000 35255000 3 3 2 3 3 3 3 3 3 3 3 30259000 48364000 82596 57749000 24859000 22475000 21983000 38536000 39785000 35295000 38714000 28172000 45164000 2267000 57723000 23753000 25433000 22999000 38273000 39657000 34605000 37380000 3 3 1 3 3 3 3 3 3 3 3 4101900000 2334300000 1767600000 17107 634 15710 86715;86716;86717;86718;86719;86720 104929;104930;104931;104932;104933;104934 104932 6 SGVGNVFIK Unmodified 919.51272 0.51271674 1619 Q13310;Q13310-2;Q13310-3 PABPC4 Polyadenylate-binding protein 4 no no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 50.807 50.736 2 3.0817E-05 14468 20211116_3436_TMUAki_TMT10x_P_F8 154.12 43.809 15138000 24431000 115880 28937000 27262000 23826000 16594000 18490000 21510000 17676000 21678000 14096000 22814000 1514500 29125000 25878000 24468000 17542000 19044000 21674000 17297000 20907000 4 4 3 4 4 4 4 4 4 4 4 8372600 13027000 69557 15691000 21044000 18144000 10513000 9694900 11781000 9742200 11681000 7796200 12165000 936430 15856000 19917000 18143000 11254000 10285000 11926000 9512800 11271000 2 2 2 2 2 2 2 2 2 2 2 6765800 11404000 46321 13245000 6218200 5682100 6080800 8795000 9729500 7934200 9996800 6299800 10648000 578050 13269000 5960500 6325000 6288100 8759300 9747900 7784400 9635200 2 2 1 2 2 2 2 2 2 2 2 1245900000 797770000 448150000 17108 1619 15711 86721;86722;86723;86724 104935;104936;104937;104938 104936 4 SGVGVAVTMEPCRK Unmodified 1489.7381 0.73811836 1682 Q14145 KEAP1 Kelch-like ECH-associated protein 1 yes yes 0 0 0 1 By MS/MS 7.5 0.5 1 1 2 38.537 38.884 3 0.00027849 9552 20211116_3436_TMUAki_TMT10x_P_F8 82.109 58.628 270380 416900 4654.7 430740 515450 461220 317410 207150 201860 202610 301800 251780 389060 30187 438900 489540 462270 328740 223300 213960 198070 288040 1 1 1 1 1 1 1 1 1 1 1 270380 416900 4654.7 430740 515450 461220 317410 207150 201860 202610 301800 251780 389060 30187 438900 489540 462270 328740 223300 213960 198070 288040 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33495000 33495000 0 17109 1682 15712 86725;86726 104939 104939 1 SGVSITIDDPVR Unmodified 1257.6565 0.65648044 3160 Q9UKV3;Q9UKV3-5;Q9UKV3-2;Q9UKV3-3 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 50.058 49.959 2 3.2083E-19 17042 20211116_3441_TMUAki_TMT10x_S_F3 221.52 181.47 30254000 48622000 280190 52578000 42983000 49158000 34800000 41656000 43830000 38955000 42859000 28170000 45384000 2761200 53307000 41013000 50121000 36006000 42651000 44160000 38157000 41375000 10 10 6 10 10 10 10 10 10 10 10 14706000 23417000 104810 25085000 27000000 34000000 19374000 20181000 21208000 19038000 19863000 13693000 21857000 1371300 25606000 25696000 33777000 20108000 21182000 21448000 18641000 19203000 5 5 4 5 5 5 5 5 5 5 5 15548000 25205000 175380 27493000 15982000 15157000 15426000 21475000 22621000 19917000 22996000 14477000 23527000 1389800 27701000 15317000 16344000 15899000 21469000 22712000 19516000 22172000 5 5 2 5 5 5 5 5 5 5 5 3758300000 1974000000 1784300000 17110 3160 15713 86727;86728;86729;86730;86731;86732;86733;86734 104940;104941;104942;104943;104944;104945;104946;104947;104948;104949 104946 10 SGVSLAALK Unmodified 844.50182 0.5018177 606;695;694 P10412;P16403;P16402 HIST1H1E;HIST1H1C;HIST1H1D Histone H1.4;Histone H1.2;Histone H1.3 no no 0 0 0 0 By MS/MS By MS/MS 6 2.92 1 1 2 1 3 51.254 51.248 2 6.3089E-06 14642 20211116_3436_TMUAki_TMT10x_P_F8 171.53 117.33 11805000 18191000 169820 20071000 29007000 25468000 13752000 22357000 21977000 17081000 20731000 10993000 16981000 1377900 20424000 27440000 25542000 15002000 22730000 21954000 16899000 20037000 2 2 2 2 2 2 2 2 2 2 2 6970200 10470000 157290 11538000 24316000 21130000 9364700 13045000 13088000 9775300 11808000 6491200 9773200 967400 11839000 22949000 20753000 10396000 13573000 13106000 9681700 11430000 1 1 1 1 1 1 1 1 1 1 1 4834900 7721600 12535 8532900 4691000 4337600 4387600 9311700 8889200 7305400 8923700 4501900 7208100 410510 8584900 4491100 4789400 4605700 9156400 8847500 7217500 8607300 1 1 1 1 1 1 1 1 1 1 1 1324700000 679470000 645180000 17111 606;695;694 15714 86735;86736;86737;86738 104950;104951;104952;104953 104950 4 SGVSLAALKK Unmodified 972.59678 0.59678072 606;695;694 P10412;P16403;P16402 HIST1H1E;HIST1H1C;HIST1H1D Histone H1.4;Histone H1.2;Histone H1.3 no no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 46.565 46.392 3 9.1707E-08 14114 20211116_3429_TMUAki_TMT10x_P_F2 118.28 56.629 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17112 606;695;694 15715 86739;86740;86741 104954;104955;104956 104955 3 SGVSLAALKKALAAAGYDVEK Unmodified 2061.147 0.14700517 606;695;694 P10412;P16403;P16402 HIST1H1E;HIST1H1C;HIST1H1D Histone H1.4;Histone H1.2;Histone H1.3 no no 0 0 0 2 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 77.323 77.337 4 1.0155E-34 25613 20211116_3431_TMUAki_TMT10x_P_F4 187.81 172.89 20176000 33407000 141290 27318000 173530000 21704000 25125000 23431000 7614600 10094000 40277000 18785000 31150000 3696000 28215000 162650000 22496000 32703000 23336000 9671700 10408000 37842000 2 2 1 2 2 2 2 2 2 2 2 7636500 12838000 141290 10823000 12256000 15861000 12353000 9052000 3302500 4103900 14406000 7111400 11972000 829500 11258000 11763000 15694000 12245000 9399000 4149800 4211900 13553000 1 1 1 1 1 1 1 1 1 1 1 12540000 20569000 0 16496000 161270000 5843900 12772000 14379000 4312100 5990300 25871000 11674000 19178000 2866500 16957000 150890000 6802200 20458000 13937000 5522000 6196000 24289000 1 1 0 1 1 1 1 1 1 1 1 6918700000 2981800000 3936900000 17113 606;695;694 15716 86742;86743 104957;104958 104957 2 SGWESYYK Acetyl (Protein N-term) 1060.4502 0.45017606 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 1 0 0 0 By MS/MS By matching 3.33 0.471 2 1 1 2 62.544 62.258 2 0.0060382 21068 20211116_3430_TMUAki_TMT10x_P_F3 55.717 49.352 2712500 4134300 99187 4999600 4336700 5236100 3691600 2467900 2543900 2541900 3169000 2526300 3860900 340070 5042900 4148000 5257400 3742700 2651200 2660400 2479500 3037600 1 1 1 1 1 1 1 1 1 1 1 2712500 4134300 99187 4999600 4336700 5236100 3691600 2467900 2543900 2541900 3169000 2526300 3860900 340070 5042900 4148000 5257400 3742700 2651200 2660400 2479500 3037600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 380460000 165740000 214720000 17114 647 15717 86744;86745;86746 104959 104959 1 SGWESYYKTEGDEEAEEEQEENLEASGDYK Acetyl (Protein N-term) 3542.4281 0.42812239 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 1 0 0 1 By MS/MS 1 0 1 1 71.889 71.889 3 3.2274E-20 23013 20211116_3428_TMUAki_TMT10x_P_F1 50.144 44.769 2692000 4820400 14917 3764900 3719300 5115200 5016300 1612200 1277200 2151200 3106500 2506500 4494000 244390 3935500 3599300 5049000 4904700 1832100 1527900 2078800 2940100 2 2 1 2 2 2 2 2 2 2 2 2692000 4820400 14917 3764900 3719300 5115200 5016300 1612200 1277200 2151200 3106500 2506500 4494000 244390 3935500 3599300 5049000 4904700 1832100 1527900 2078800 2940100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 471740000 471740000 0 17115 647 15718 86747 104960;104961 104961 2 SGYAFVDCPDEHWAMK Oxidation (M) 1927.7869 0.78691904 3032 Q9NZI8;Q9NZI8-2 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes no 0 0 1 0 By MS/MS By MS/MS 4.29 1.03 2 2 2 1 3 4 53.569 53.656 3 1.2347E-07 16060 20211116_3433_TMUAki_TMT10x_P_F5 112.17 103.32 37096000 64468000 144470 76050000 54978000 49238000 43731000 28983000 27809000 31037000 48976000 34539000 60199000 3158700 76365000 52422000 51359000 44453000 30552000 29738000 30228000 46590000 11 11 7 11 11 11 11 11 11 11 11 14903000 24681000 288.87 28927000 32712000 33485000 25999000 11026000 10446000 11578000 18110000 13874000 23046000 1225900 29279000 31180000 33326000 26241000 12360000 11580000 11285000 17233000 4 4 1 4 4 4 4 4 4 4 4 22193000 39787000 144180 47123000 22266000 15754000 17732000 17958000 17362000 19459000 30866000 20665000 37153000 1932800 47086000 21242000 18033000 18212000 18192000 18159000 18943000 29357000 7 7 6 7 7 7 7 7 7 7 7 4499300000 1944200000 2555200000 17116 3032 15719 86748;86749;86750;86751;86752;86753;86754 104962;104963;104964;104965;104966;104967;104968;104969;104970;104971;104972;104973 104965 3083 12 SGYAFVDCPDEHWAMK Unmodified 1911.792 0.79200442 3032 Q9NZI8;Q9NZI8-2 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.894 2 1 2 2 3 58.961 59.012 3 0.000216 17123 20211116_3434_TMUAki_TMT10x_P_F6 77.222 66.435 19681000 33698000 184880 40210000 27161000 28682000 26402000 17080000 15289000 17616000 23403000 18326000 31468000 1908700 40388000 26035000 29670000 26476000 17968000 16328000 17182000 22325000 3 3 3 3 3 3 3 3 3 3 3 12100000 21194000 57115 25016000 19406000 23108000 19592000 11148000 9757200 11529000 14029000 11267000 19790000 1158700 25222000 18615000 23390000 19558000 11949000 10508000 11244000 13401000 2 2 2 2 2 2 2 2 2 2 2 7580800 12505000 127770 15193000 7754800 5573800 6810000 5932500 5531700 6087100 9374200 7059400 11678000 750010 15166000 7419600 6279600 6917500 6018300 5819900 5938600 8924000 1 1 1 1 1 1 1 1 1 1 1 2854700000 1212700000 1642000000 17117 3032 15719 86755;86756;86757;86758;86759 104974;104975;104976 104975 3 SGYGFNEPEQSR Unmodified 1369.5899 0.58985744 1915 Q5BKZ1 ZNF326 DBIRD complex subunit ZNF326 yes yes 0 0 0 0 By MS/MS 3 0 1 1 35.503 35.263 2 2.5558E-31 11127 20211116_3441_TMUAki_TMT10x_S_F3 275.48 231.71 226150 345600 0 646170 214230 178970 226380 394900 635460 247240 537140 210570 323610 17975 630980 205680 215990 241650 386190 625080 247550 521200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 226150 345600 0 646170 214230 178970 226380 394900 635460 247240 537140 210570 323610 17975 630980 205680 215990 241650 386190 625080 247550 521200 1 1 0 1 1 1 1 1 1 1 1 31059000 0 31059000 17118 1915 15720 86760 104977 104977 1 SGYITIGYR Unmodified 1028.5291 0.52909508 2430 Q96CX2 KCTD12 BTB/POZ domain-containing protein KCTD12 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 45.989 46.058 2 0.00079665 14491 20211116_3439_TMUAki_TMT10x_S_F1 86.205 70.324 5128100 8854700 131900 8975600 9059800 12407000 6868500 8342200 7842800 7195100 7378700 4775700 8262800 603150 9199400 8639900 12336000 7111800 8652600 7919600 7074400 7132400 2 2 2 2 2 2 2 2 2 2 2 5128100 8854700 131900 8975600 9059800 12407000 6868500 8342200 7842800 7195100 7378700 4775700 8262800 603150 9199400 8639900 12336000 7111800 8652600 7919600 7074400 7132400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 380620000 380620000 0 17119 2430 15721 86761;86762;86763 104978;104979;104980 104980 3 SGYLLPDTK Unmodified 992.51786 0.51786169 672 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 By MS/MS 5 0 1 1 49.492 49.683 2 0.0075741 14532 20211116_3433_TMUAki_TMT10x_P_F5 74.162 33.175 3567100 5361100 0 7224800 11417000 8360900 4431100 4786700 5106000 3807500 5317800 3321300 5009500 401150 7255900 10772000 8367100 4880900 5017900 5172500 3759000 5123300 1 1 0 1 1 1 1 1 1 1 1 3567100 5361100 0 7224800 11417000 8360900 4431100 4786700 5106000 3807500 5317800 3321300 5009500 401150 7255900 10772000 8367100 4880900 5017900 5172500 3759000 5123300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 435050000 435050000 0 17120 672 15722 86764 104981 104981 1 SGYPDIGFPLFPLSK Unmodified 1636.8501 0.85009487 2748 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O yes yes 0 0 0 0 By MS/MS By MS/MS 2.2 0.4 4 1 2 3 80.261 80.237 2;3 7.0836E-19 26589 20211116_3440_TMUAki_TMT10x_S_F2 160.52 135.18 15651000 26022000 7461.6 24637000 16654000 20071000 18054000 11560000 11427000 13759000 17854000 14570000 24276000 1003500 25164000 15983000 20537000 18034000 12248000 12143000 13347000 17024000 4 4 1 4 4 4 4 4 4 4 4 7876000 13254000 0 11831000 7057700 12494000 8356600 5673600 5880700 6890600 8327500 7331400 12362000 407120 12180000 6784700 12534000 8331900 6149100 6177800 6679600 7957500 2 2 0 2 2 2 2 2 2 2 2 7775100 12768000 7461.6 12806000 9595900 7577000 9697300 5886100 5546300 6868400 9526200 7238800 11914000 596380 12984000 9198700 8003500 9702500 6099300 5965300 6667600 9066400 2 2 1 2 2 2 2 2 2 2 2 5226700000 2150100000 3076600000 17121 2748 15723 86765;86766;86767;86768;86769 104982;104983;104984;104985 104985 4 SGYQALPWVR Unmodified 1175.6087 0.60874239 2717 Q9BXS5;Q9BXS5-2;Q9Y6Q5;Q9Y6Q5-2 AP1M1;AP1M2 AP-1 complex subunit mu-1;AP-1 complex subunit mu-2 yes no 0 0 0 0 By MS/MS 2 0 1 1 57.173 56.951 2 0.095305 17155 20211116_3440_TMUAki_TMT10x_S_F2 56.013 36.023 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17122 2717 15724 86770 104986 104986 1 SGYQDMPEYENFR Oxidation (M) 1650.662 0.6620361 1808 Q15436;Q15436-2 SEC23A Protein transport protein Sec23A yes no 0 0 1 0 By MS/MS 3 0 1 1 40.523 40.578 2 1.2202E-05 12145 20211116_3430_TMUAki_TMT10x_P_F3 106.37 97.388 105900 152930 3546.2 236990 253870 319190 175530 169790 212520 132680 165700 98626 143020 14157 237060 241670 316740 183290 179060 212920 131110 161290 1 1 1 1 1 1 1 1 1 1 1 105900 152930 3546.2 236990 253870 319190 175530 169790 212520 132680 165700 98626 143020 14157 237060 241670 316740 183290 179060 212920 131110 161290 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24957000 24957000 0 17123 1808 15725 86771 104987 104987 2433 1 SGYRIDFYFDENPYFENK Unmodified 2303.0171 0.017113212 1478 Q01105;Q01105-2;Q01105-3;Q01105-4;P0DME0 SET;SETSIP Protein SET;Protein SETSIP yes no 0 0 0 1 By MS/MS By MS/MS 5 1.22 1 2 2 2 1 4 4 75.356 75.336 3 2.5044E-18 24780 20211116_3431_TMUAki_TMT10x_P_F4 159.26 143.31 76001000 129840000 240060 103330000 90680000 133750000 97686000 101330000 106390000 102000000 101700000 70761000 121050000 6135800 107740000 87100000 133650000 98990000 104680000 107690000 99590000 98250000 16 16 9 16 16 16 16 16 16 16 16 38807000 63518000 152220 49990000 37016000 82896000 45915000 50827000 54463000 53561000 48290000 36134000 59218000 3256900 52445000 35721000 81699000 46373000 53378000 54814000 52198000 46774000 9 9 6 9 9 9 9 9 9 9 9 37193000 66319000 87836 53341000 53663000 50855000 51770000 50499000 51926000 48439000 53409000 34627000 61834000 2879000 55296000 51379000 51953000 52617000 51300000 52871000 47393000 51476000 7 7 3 7 7 7 7 7 7 7 7 5750800000 2442300000 3308500000 17124 1478 15726 86772;86773;86774;86775;86776;86777;86778;86779 104988;104989;104990;104991;104992;104993;104994;104995;104996;104997;104998;104999;105000;105001;105002;105003 104991 16 SHAIFTIHVCQTR Unmodified 1568.7882 0.78818009 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4;Q7Z4S6-6 KIF21A Kinesin-like protein KIF21A yes no 0 0 0 0 By MS/MS By MS/MS 3.21 1.52 2 3 4 1 3 1 8 6 35.578 35.536 3;4 3.3831E-19 11231 20211116_3441_TMUAki_TMT10x_S_F3 182.33 156.85 6145800 9602800 372930 11089000 11454000 10605000 8318000 6969800 6863400 6494100 8617600 5725100 8966000 921510 11201000 10926000 10752000 8556200 7255600 7108200 6362000 8258800 15 15 12 15 15 15 15 15 15 15 15 4316400 6652100 275520 7704100 9623400 8841400 6200000 5007000 4865800 4614500 6053400 4021000 6211100 679030 7802100 9157300 8850700 6426600 5272500 5050600 4522900 5802700 10 10 7 10 10 10 10 10 10 10 10 1829400 2950700 97414 3385300 1830800 1764000 2118000 1962800 1997600 1879600 2564200 1704100 2754900 242480 3398600 1768600 1901500 2129600 1983100 2057600 1839100 2456000 5 5 5 5 5 5 5 5 5 5 5 926040000 584230000 341820000 17125 2082 15727 86780;86781;86782;86783;86784;86785;86786;86787;86788;86789;86790;86791;86792;86793 105004;105005;105006;105007;105008;105009;105010;105011;105012;105013;105014;105015;105016;105017;105018;105019 105018 16 SHATTEPEQTEPEQREPTPYPDER Unmodified 2823.2584 0.25835913 1435 P78559;P78559-2 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 yes no 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 29.847 29.741 4 6.0696E-73 5919 20211116_3428_TMUAki_TMT10x_P_F1 252.01 240.24 59989 94720 778.86 155430 174430 183100 94130 82606 117190 69786 92167 55853 88611 4488.9 154690 165210 182560 100390 88676 117330 68685 89685 3 3 1 3 3 3 3 3 3 3 3 46585 71423 0 111330 159220 170540 76544 60141 84984 53101 64862 43367 66794 2626.5 111640 150520 167610 82226 66509 85373 52151 63193 2 2 0 2 2 2 2 2 2 2 2 13404 23298 778.86 44098 15206 12555 17586 22464 32209 16685 27305 12486 21817 1862.4 43047 14687 14958 18167 22167 31953 16533 26492 1 1 1 1 1 1 1 1 1 1 1 60631000 50304000 10326000 17126 1435 15728 86794;86795;86796;86797 105020;105021;105022 105020 3 SHAVACVNQFIISR Unmodified 1600.8144 0.81439484 2381 Q92973;Q92973-2;Q92973-3 TNPO1 Transportin-1 yes no 0 0 0 0 By MS/MS By MS/MS 2.91 1.83 2 3 4 1 1 6 5 46.14 46.051 2;3 5.5661E-37 14317 20211116_3430_TMUAki_TMT10x_P_F3 240.65 213.76 14197000 23840000 361510 26552000 18915000 18842000 13856000 20386000 19109000 17502000 21680000 13221000 22255000 1534400 26781000 18029000 19705000 14482000 20563000 19302000 17212000 20835000 13 13 11 13 13 13 13 13 13 13 13 5066400 7633100 150990 8340500 10430000 11508000 6819500 6890100 6419300 5734400 7730000 4718400 7125100 634500 8506000 9919500 11424000 7093800 7203800 6594500 5648100 7416300 5 5 4 5 5 5 5 5 5 5 5 9130900 16206000 210510 18212000 8484900 7334400 7036600 13496000 12690000 11767000 13950000 8503000 15130000 899890 18275000 8109100 8281200 7388200 13359000 12707000 11564000 13419000 8 8 7 8 8 8 8 8 8 8 8 4055200000 2312100000 1743100000 17127 2381 15729 86798;86799;86800;86801;86802;86803;86804;86805;86806;86807;86808 105023;105024;105025;105026;105027;105028;105029;105030;105031;105032;105033;105034;105035;105036 105027 14 SHAVFNIIFTQK Unmodified 1403.7561 0.75613491 1560 Q12756;Q12756-3;Q12756-2 KIF1A Kinesin-like protein KIF1A yes no 0 0 0 0 By MS/MS 5 0 1 1 60.341 60.447 3 0.0069067 17800 20211116_3444_TMUAki_TMT10x_S_F5 64.65 48.426 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17128 1560 15730 86809 105037 105037 1 SHAVLLVK Unmodified 865.53854 0.53853756 1734 Q14807;Q14807-2 KIF22 Kinesin-like protein KIF22 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 3 1 36.775 36.745 3 0.03181 8681 20211116_3428_TMUAki_TMT10x_P_F1 51.346 39.12 901670 1407600 16010 1532500 1245900 1186400 1006900 1083300 1081300 997500 1241400 839660 1313900 94496 1549400 1189600 1227700 1036100 1104100 1102400 977750 1192500 2 2 2 2 2 2 2 2 2 2 2 367720 549750 7082.8 620000 761060 722540 484090 441860 453150 421910 513040 342440 513240 42596 629080 723210 723440 504560 462820 464490 412880 493060 1 1 1 1 1 1 1 1 1 1 1 533950 857850 8927.3 912540 484840 463890 522800 641450 628130 575590 728310 497220 800670 51900 920370 466380 504250 531580 641250 637960 564860 699480 1 1 1 1 1 1 1 1 1 1 1 59471000 33722000 25749000 17129 1734 15731 86810;86811;86812;86813 105038;105039;105040;105041 105038 4 SHCFVTYSTVEEAVATR Unmodified 1955.9047 0.90472599 3160 Q9UKV3;Q9UKV3-5;Q9UKV3-2;Q9UKV3-3 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.957 1 2 2 1 3 3 51.113 51.271 3 7.8321E-22 15115 20211116_3433_TMUAki_TMT10x_P_F5 171.26 152.67 12379000 19742000 105520 21807000 18442000 23742000 13762000 18030000 19554000 15966000 16922000 11526000 18429000 718900 22129000 17564000 23939000 14384000 18558000 19546000 15679000 16406000 6 6 2 6 6 6 6 6 6 6 6 7863300 12861000 105520 13623000 13870000 19162000 9964200 11702000 12492000 10358000 10383000 7321400 12004000 718900 13927000 13200000 19012000 10390000 12234000 12523000 10171000 10081000 4 4 2 4 4 4 4 4 4 4 4 4515400 6880700 0 8183400 4572000 4579300 3798100 6327500 7062200 5608500 6539700 4204300 6425300 0 8202500 4364400 4926700 3994100 6323600 7023200 5507200 6324800 2 2 0 2 2 2 2 2 2 2 2 5113700000 2854900000 2258800000 17130 3160 15732 86814;86815;86816;86817;86818;86819 105042;105043;105044;105045;105046;105047;105048 105043 7 SHCIAEVEK Unmodified 1071.5019 0.50189405 38 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS 3 1.41 1 1 1 1 1 4 1 31.32 31.218 3 0.00037971 9505 20211116_3441_TMUAki_TMT10x_S_F3 105.2 78.522 + 1692200 2250400 11181 2140400 2489400 2375000 2022600 1610500 2202200 1708800 2051200 1575600 2099500 149650 2194900 2375100 2387900 2081500 1678900 2227100 1664900 1983400 3 3 2 3 3 3 3 3 3 3 3 1366600 1846000 10310 1731800 2092500 2167300 1735400 1266400 1725100 1347100 1634000 1272400 1722100 120840 1781300 1997200 2160800 1778600 1335400 1752300 1312300 1579100 2 2 1 2 2 2 2 2 2 2 2 325640 404460 871.05 408630 396950 207770 287160 344100 477040 361740 417220 303210 377420 28808 413570 377910 227110 302900 343500 474880 352570 404330 1 1 1 1 1 1 1 1 1 1 1 188170000 147650000 40524000 17131 38 15733 86820;86821;86822;86823;86824 105049;105050;105051 105051 3 SHCIAEVEKDAIPENLPPLTADFAEDKDVCK Unmodified 3510.6647 0.66468523 38 CON__P02769 yes yes 0 0 0 2 By MS/MS By MS/MS 5.43 1.4 1 1 1 2 2 6 1 67.2 67.315 5;6 4.1406E-15 20570 20211116_3434_TMUAki_TMT10x_P_F6 112.33 107.38 + 31313000 55336000 400740 45413000 42308000 93262000 56214000 121440000 85156000 79749000 62850000 29155000 51598000 2499000 47745000 40917000 92691000 57190000 120800000 84574000 79605000 61320000 14 14 6 14 14 14 14 14 14 14 14 30100000 52990000 376650 43447000 39825000 91828000 54682000 116420000 82141000 76297000 60426000 28026000 49410000 2358200 45721000 38558000 91116000 55540000 115930000 81592000 76169000 58963000 13 13 5 13 13 13 13 13 13 13 13 1212700 2346300 24086 1966000 2483400 1434500 1532000 5018000 3015600 3451800 2424700 1129300 2187900 140790 2024500 2358800 1574700 1649700 4874200 2982000 3435800 2357300 1 1 1 1 1 1 1 1 1 1 1 9967800000 8775000000 1192800000 17132 38 15734 86825;86826;86827;86828;86829;86830;86831 105052;105053;105054;105055;105056;105057;105058;105059;105060;105061;105062;105063;105064 105063 13 SHEAEVLK Unmodified 911.47125 0.47124585 698 P16949;P16949-2 STMN1 Stathmin yes no 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 5 3 30.167 30.08 2;3 0.00010067 6387 20211116_3431_TMUAki_TMT10x_P_F4 188.76 116.62 5881400 9729400 25628 8133100 7184900 8028000 6663300 3781400 4513400 4073500 6661800 5476100 9072600 505830 8408200 6876100 8089400 6719600 4067700 4762000 3966300 6359900 9 9 6 9 9 9 9 9 9 9 9 3900700 6301500 19149 5371000 4896900 6250400 3978200 2577800 3065800 2756000 4391700 3632000 5876500 343070 5558200 4672600 6230700 4055100 2811600 3205900 2684400 4195500 6 6 5 6 6 6 6 6 6 6 6 1980700 3427900 6478.8 2762000 2288100 1777600 2685100 1203600 1447600 1317400 2270100 1844100 3196100 162760 2850000 2203500 1858800 2664500 1256200 1556100 1282000 2164400 3 3 1 3 3 3 3 3 3 3 3 814880000 339500000 475380000 17133 698 15735 86832;86833;86834;86835;86836;86837;86838;86839 105065;105066;105067;105068;105069;105070;105071;105072;105073;105074 105069 10 SHEGETAYIR Unmodified 1161.5415 0.54145068 1543 Q07955 SRSF1 Serine/arginine-rich splicing factor 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.86 1.25 1 2 2 1 1 5 2 26.372 26.221 2;3 3.3001E-10 6292 20211116_3429_TMUAki_TMT10x_P_F2 192.12 161.93 967030 1602200 15985 1311200 1221400 1781700 1134900 1262400 1093700 989740 1222900 900500 1494000 92401 1365200 1169700 1774400 1154400 1301500 1119100 977860 1175600 8 8 5 8 8 8 8 8 8 8 8 830580 1368100 12425 1135800 1081900 1603000 956790 1094400 951900 854710 1060100 773420 1275700 77727 1182100 1034800 1592800 976900 1131200 972450 844630 1019300 7 7 4 7 7 7 7 7 7 7 7 136450 234160 3560.7 175380 139500 178760 178130 167930 141830 135020 162710 127080 218270 14674 183120 134950 181660 177540 170310 146610 133230 156320 1 1 1 1 1 1 1 1 1 1 1 94163000 64563000 29600000 17134 1543 15736 86840;86841;86842;86843;86844;86845;86846 105075;105076;105077;105078;105079;105080;105081;105082 105077 8 SHEGETSYIR Unmodified 1177.5364 0.53636531 1611 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 yes yes 0 0 0 0 By MS/MS 3 0 1 1 27.004 26.711 3 0.00053635 7813 20211116_3441_TMUAki_TMT10x_S_F3 89.679 72.458 40653 77579 0 58681 40437 57783 39283 42376 38341 39290 55403 37848 72319 2891.2 61186 38713 58574 39878 43770 39652 38500 52917 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 40653 77579 0 58681 40437 57783 39283 42376 38341 39290 55403 37848 72319 2891.2 61186 38713 58574 39878 43770 39652 38500 52917 1 1 0 1 1 1 1 1 1 1 1 1562800 0 1562800 17135 1611 15737 86847 105083 105083 1 SHFEQWGTLTDCVVMR Unmodified 1964.8873 0.88730179 583 P09651;P09651-2;P09651-3;Q32P51 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 0 0 By MS/MS By MS/MS 7 0.707 1 2 1 2 2 59.295 59.62 3 3.723E-11 19177 20211116_3435_TMUAki_TMT10x_P_F7 136.57 123.45 20203000 34615000 335400 32874000 24101000 26492000 26331000 21373000 18859000 19938000 24737000 18812000 32293000 1862900 33564000 23174000 27267000 26361000 21946000 19722000 19532000 23681000 4 4 2 4 4 4 4 4 4 4 4 8555900 14020000 35212 14414000 10800000 16110000 12186000 9050600 7257900 8241300 10170000 7965300 13084000 611980 14702000 10382000 16148000 12136000 9534100 7702700 8082300 9720400 2 2 1 2 2 2 2 2 2 2 2 11647000 20595000 300190 18460000 13301000 10382000 14145000 12323000 11601000 11697000 14567000 10847000 19209000 1250900 18862000 12792000 11118000 14225000 12412000 12019000 11450000 13961000 2 2 1 2 2 2 2 2 2 2 2 5452400000 3074500000 2378000000 17136 583 15738 86848;86849;86850;86851 105084;105085;105086 105085 3 SHFEQWGTLTDCVVMR Oxidation (M) 1980.8822 0.88221641 583 P09651;P09651-2;P09651-3;Q32P51 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 1 0 By MS/MS By MS/MS 6.5 0.957 1 2 2 1 4 2 54.204 54.497 2;3 2.6773E-21 15264 20211116_3434_TMUAki_TMT10x_P_F6 151.79 138.59 230540000 346440000 4510300 381910000 460410000 388510000 251940000 237070000 246900000 229930000 301250000 214690000 323400000 25991000 387210000 436460000 391980000 266300000 248470000 253330000 224860000 288920000 7 7 5 7 7 7 7 7 7 7 7 200160000 299690000 4243600 330850000 429130000 361740000 217220000 205840000 214930000 198940000 261030000 186400000 279760000 23211000 335790000 406360000 363110000 231350000 216950000 220390000 194580000 250380000 5 5 3 5 5 5 5 5 5 5 5 30382000 46744000 266700 51061000 31285000 26776000 34716000 31226000 31967000 30995000 40211000 28291000 43633000 2780100 51423000 30100000 28875000 34949000 31517000 32933000 30281000 38535000 2 2 2 2 2 2 2 2 2 2 2 11181000000 7318100000 3863000000 17137 583 15738 86852;86853;86854;86855;86856;86857 105087;105088;105089;105090 105087 552 4 SHFEQWGTLTDCVVMRDPNTK Oxidation (M) 2536.1475 0.14749223 583 P09651;P09651-2;P09651-3;Q32P51 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 1 1 By MS/MS By MS/MS 6.53 0.884 2 5 6 2 8 7 52.205 52.506 3;4;5 3.9141E-14 16849 20211116_3446_TMUAki_TMT10x_S_F7 135.38 118.46 85020000 147040000 489930 168590000 98059000 110510000 97985000 60061000 57260000 66196000 101340000 79158000 137290000 6453600 169600000 93993000 115030000 98133000 63796000 61598000 64397000 96392000 22 22 10 22 22 22 22 22 22 22 22 45036000 76079000 256610 88964000 65163000 83642000 60423000 30863000 28580000 33959000 53433000 41931000 71038000 3457200 89768000 62348000 84351000 60551000 34136000 31351000 33039000 50776000 12 12 5 12 12 12 12 12 12 12 12 39984000 70965000 233320 79626000 32896000 26871000 37562000 29199000 28680000 32236000 47904000 37227000 66250000 2996400 79831000 31645000 30681000 37582000 29661000 30247000 31359000 45616000 10 10 5 10 10 10 10 10 10 10 10 19802000000 11120000000 8682500000 17138 583 15739 86858;86859;86860;86861;86862;86863;86864;86865;86866;86867;86868;86869;86870;86871;86872 105091;105092;105093;105094;105095;105096;105097;105098;105099;105100;105101;105102;105103;105104;105105;105106;105107;105108;105109;105110;105111;105112 105110 552 22 SHFEQWGTLTDCVVMRDPNTK Unmodified 2520.1526 0.15257761 583 P09651;P09651-2;P09651-3;Q32P51 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 0 1 By MS/MS By MS/MS 7 0.632 1 3 1 2 3 56.465 56.867 3;4 2.3272E-26 16387 20211116_3447_TMUAki_TMT10x_S_F8 171.07 147.62 87318000 139380000 1591000 190130000 74306000 53378000 81943000 38355000 36048000 42766000 85116000 81310000 130250000 8118800 188340000 71509000 62476000 81298000 39887000 40422000 41586000 80590000 10 10 7 10 10 10 10 10 10 10 10 12420000 17410000 288630 24525000 15717000 13625000 16092000 3474500 4052300 4656200 10075000 11566000 16272000 1332100 24354000 15096000 14325000 15931000 4080300 4863100 4498800 9532400 2 2 1 2 2 2 2 2 2 2 2 74898000 121970000 1302300 165610000 58589000 39753000 65851000 34880000 31996000 38110000 75041000 69744000 113980000 6786700 163980000 56413000 48151000 65367000 35806000 35559000 37087000 71057000 8 8 6 8 8 8 8 8 8 8 8 8111200000 3088900000 5022200000 17139 583 15739 86873;86874;86875;86876;86877 105113;105114;105115;105116;105117;105118;105119;105120;105121;105122 105120 10 SHFEQWGTLTDCVVMRDPNTKR Oxidation (M) 2692.2486 0.24860326 583 P09651;P09651-2;P09651-3;Q32P51 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 1 2 By MS/MS By MS/MS 5.88 2.85 2 3 3 4 4 47.116 47.298 3;4;5 2.2023E-13 13010 20211116_3436_TMUAki_TMT10x_P_F8 122.53 107.91 26691000 48136000 633770 48101000 36360000 44773000 30916000 28220000 23993000 31873000 38866000 24855000 44916000 2733400 49023000 34752000 45445000 31429000 29637000 25239000 30979000 37032000 11 11 5 11 11 11 11 11 11 11 11 12295000 20847000 35750 20756000 21106000 30116000 19100000 12784000 10621000 13426000 16218000 11447000 19452000 971750 21321000 20176000 29713000 19216000 13892000 11375000 13086000 15472000 7 7 2 7 7 7 7 7 7 7 7 14396000 27289000 598020 27345000 15255000 14657000 11815000 15436000 13372000 18447000 22648000 13408000 25463000 1761700 27703000 14577000 15732000 12213000 15745000 13865000 17892000 21560000 4 4 3 4 4 4 4 4 4 4 4 19448000000 8535200000 10913000000 17140 583 15740 86878;86879;86880;86881;86882;86883;86884;86885 105123;105124;105125;105126;105127;105128;105129;105130;105131;105132;105133 105128 552 11 SHFEQWGTLTDCVVMRDPNTKR Unmodified 2676.2537 0.25368864 583 P09651;P09651-2;P09651-3;Q32P51 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 0 2 By MS/MS By MS/MS 5.33 2.98 4 1 1 4 5 8 7 51.089 51.209 3;4;5 5.5631E-68 14077 20211116_3447_TMUAki_TMT10x_S_F8 248.54 233.96 95100000 154250000 1742900 172330000 122090000 120380000 117090000 68142000 57223000 64615000 109610000 88560000 144000000 9769200 173750000 117040000 124670000 117180000 71813000 62693000 63252000 104120000 24 24 17 24 24 24 24 24 24 24 24 57004000 88013000 592040 98569000 87361000 92886000 85437000 35588000 30124000 35287000 61508000 53080000 82165000 5603800 99726000 83747000 93689000 85051000 39066000 34180000 34476000 58363000 14 14 8 14 14 14 14 14 14 14 14 38097000 66241000 1150900 73758000 34730000 27498000 31653000 32554000 27099000 29328000 48104000 35480000 61838000 4165400 74023000 33292000 30980000 32127000 32747000 28513000 28776000 45754000 10 10 9 10 10 10 10 10 10 10 10 43213000000 25285000000 17928000000 17141 583 15740 86886;86887;86888;86889;86890;86891;86892;86893;86894;86895;86896;86897;86898;86899;86900 105134;105135;105136;105137;105138;105139;105140;105141;105142;105143;105144;105145;105146;105147;105148;105149;105150;105151;105152;105153;105154 105153 21 SHFVAASLSNQK Unmodified 1287.6571 0.65714914 2125 Q86XP3;Q86XP3-2 DDX42 ATP-dependent RNA helicase DDX42 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 35.977 35.96 3 1.7971E-07 8342 20211116_3428_TMUAki_TMT10x_P_F1 128.33 106.82 2500700 4137200 22688 4522500 4332800 4195100 2927100 2751700 2775400 2547100 3514800 2328500 3861900 248100 4581600 4120200 4261500 3037900 2864500 2856400 2496100 3367700 4 4 3 4 4 4 4 4 4 4 4 1419300 2314600 17141 2372400 3218900 3272900 1906100 1561400 1513300 1448000 1946800 1321600 2160000 152820 2429600 3054100 3240200 1989900 1670500 1572100 1418900 1864600 2 2 1 2 2 2 2 2 2 2 2 1081400 1822600 5547.3 2150100 1113900 922190 1021000 1190300 1262100 1099100 1568000 1007000 1701900 95282 2151900 1066100 1021200 1048000 1194000 1284300 1077200 1503100 2 2 2 2 2 2 2 2 2 2 2 86795000 47326000 39469000 17142 2125 15741 86901;86902 105155;105156;105157;105158 105155 4 SHGFAAEFK Unmodified 992.47158 0.4715802 1242 P55265;P55265-5;P55265-4;P55265-3;P55265-2 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 0 0 By matching By MS/MS 4.67 0.471 1 2 2 1 37.494 37.554 3 0.00050206 8506 20211116_3444_TMUAki_TMT10x_S_F5 99.257 74.481 591550 922390 1780.3 1000200 634130 465580 565740 778990 806470 626810 870360 550800 860980 51299 1006800 606430 514310 584880 771650 812180 618440 837630 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 591550 922390 1780.3 1000200 634130 465580 565740 778990 806470 626810 870360 550800 860980 51299 1006800 606430 514310 584880 771650 812180 618440 837630 1 1 1 1 1 1 1 1 1 1 1 180520000 135800000 44716000 17143 1242 15742 86903;86904;86905 105159 105159 1 SHGLFGLNENQLR Unmodified 1483.7532 0.75317479 2482 Q96H79 ZC3HAV1L Zinc finger CCCH-type antiviral protein 1-like yes yes 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 44.807 45.124 3 5.7223E-15 13360 20211116_3435_TMUAki_TMT10x_P_F7 171.2 148.28 5638700 9677600 143340 9985800 10090000 10784000 6889900 6848000 7371300 5736300 7810700 5251000 9031400 633820 10177000 9601100 10848000 7171000 7128000 7493600 5648200 7521100 4 4 2 4 4 4 4 4 4 4 4 4417500 7474000 143340 7671300 8946300 9671300 5996600 5300500 5745000 4599000 6201400 4114000 6974800 546710 7841900 8511600 9630900 6229000 5588700 5871700 4520500 5968100 3 3 2 3 3 3 3 3 3 3 3 1221200 2203600 0 2314600 1143700 1112900 893340 1547500 1626400 1137400 1609300 1137000 2056600 87111 2335400 1089500 1217600 941940 1539200 1621900 1127700 1553000 1 1 0 1 1 1 1 1 1 1 1 2349400000 1511000000 838330000 17144 2482 15743 86906;86907;86908;86909;86910;86911 105160;105161;105162;105163;105164;105165 105163 6 SHGLLVQQALPK Unmodified 1289.7456 0.74557022 2776 Q9H0P0;Q9H0P0-1;Q9H0P0-3;Q9H0P0-2 NT5C3A Cytosolic 5'-nucleotidase 3A yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 42.973 42.975 3 0.00011308 11259 20211116_3436_TMUAki_TMT10x_P_F8 92.112 63.209 4101500 6998200 66311 7753200 7170200 6765200 4845600 5430700 5643400 5082800 6369400 3819400 6532900 444820 7841500 6820700 6922900 5061400 5578500 5732100 4978500 6121800 4 4 4 4 4 4 4 4 4 4 4 2278300 3500800 44390 3830000 5266500 5108000 3123700 2815200 2935400 2661100 3262000 2121700 3267800 272110 3903100 4998600 5073300 3274700 2973400 3006100 2605300 3136600 2 2 2 2 2 2 2 2 2 2 2 1823200 3497400 21920 3923200 1903700 1657200 1722000 2615500 2708000 2421700 3107400 1697700 3265000 172710 3938400 1822100 1849600 1786700 2605100 2726000 2373100 2985200 2 2 2 2 2 2 2 2 2 2 2 371020000 237610000 133410000 17145 2776 15744 86912;86913;86914;86915 105166;105167;105168;105169 105167 4 SHIANEVEENDSIFVK Unmodified 1829.8796 0.8795571 2720 Q9BXW9;Q9BXW9-3;Q9BXW9-1;Q9BXW9-4 FANCD2 Fanconi anemia group D2 protein yes no 0 0 0 0 By matching By MS/MS 2.33 0.471 2 1 1 2 52.154 51.891 3 2.1434E-07 17910 20211116_3441_TMUAki_TMT10x_S_F3 105.39 79.799 3778300 6421100 21103 6642100 3947000 3218900 3315800 4732400 4407200 4256400 5101400 3517800 5992400 287530 6709200 3766900 3524300 3430200 4720900 4460400 4176600 4899600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3778300 6421100 21103 6642100 3947000 3218900 3315800 4732400 4407200 4256400 5101400 3517800 5992400 287530 6709200 3766900 3524300 3430200 4720900 4460400 4176600 4899600 2 2 1 2 2 2 2 2 2 2 2 462990000 205980000 257000000 17146 2720 15745 86916;86917;86918 105170;105171 105171 2 SHIEIIR Unmodified 866.4974 0.49740102 466 P00390;P00390-2;P00390-3;P00390-5;P00390-4 GSR Glutathione reductase, mitochondrial yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 31.43 31.413 3 0.0070447 6933 20211116_3431_TMUAki_TMT10x_P_F4 89.142 10.026 726640 1135300 7422.7 983560 1207200 1423100 904820 829310 763260 736320 936880 676590 1058800 68070 1020700 1149900 1409300 929230 870370 788840 722960 898400 2 2 1 2 2 2 2 2 2 2 2 726640 1135300 7422.7 983560 1207200 1423100 904820 829310 763260 736320 936880 676590 1058800 68070 1020700 1149900 1409300 929230 870370 788840 722960 898400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 77657000 77657000 0 17147 466 15746 86919;86920 105172;105173 105172 2 SHIQSLPDLSLLPNVTGGLAPLPSAGDLFSTD Unmodified 3231.6663 0.66632343 2905 Q9NQG5 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B yes yes 0 0 0 0 By MS/MS By MS/MS 6.75 0.433 1 3 2 2 82.089 82.106 3;4 2.2442E-10 29133 20211116_3446_TMUAki_TMT10x_S_F7 84.035 78.005 1506900 2317800 23718 2527200 1645400 2138200 1785900 1073000 1070500 1253000 1672800 1403200 2163600 148970 2557600 1582600 2178300 1782000 1150100 1141800 1216400 1595000 3 3 3 3 3 3 3 3 3 3 3 955270 1463200 15536 1555200 942040 1605700 1125000 691550 733070 828760 1037000 889570 1365600 93492 1580800 908810 1612100 1119400 753360 773710 803750 990960 1 1 1 1 1 1 1 1 1 1 1 551610 854650 8181.6 972050 703330 532530 660920 381410 337460 424290 635790 513660 797920 55482 976790 673810 566220 662600 396700 368050 412620 604090 2 2 2 2 2 2 2 2 2 2 2 527420000 144630000 382790000 17148 2905 15747 86921;86922;86923;86924 105174;105175;105176 105175 3 SHLAKNQGK Unmodified 981.53558 0.53557744 2239 Q8NDH2 CCDC168 Coiled-coil domain-containing protein 168 yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 42.531 42.661 3 0.10058 11231 20211116_3436_TMUAki_TMT10x_P_F8 36.334 17.236 3176700 5052100 20259 6010300 4444300 3962000 3302700 3568200 3421700 3077100 4841000 2958000 4717800 296370 6033200 4233700 4153700 3413500 3633100 3526200 3025500 4626000 2 2 1 2 2 2 2 2 2 2 2 1136700 1677900 20259 2246200 2755700 2606000 1701600 1336600 1387700 1262900 1864300 1058500 1567800 135800 2256700 2617000 2604100 1771400 1420800 1442400 1236400 1783600 1 1 1 1 1 1 1 1 1 1 1 2040000 3374200 0 3764100 1688600 1356000 1601100 2231700 2034000 1814200 2976700 1899400 3149900 160570 3776400 1616700 1549600 1642100 2212300 2083800 1789000 2842400 1 1 0 1 1 1 1 1 1 1 1 205940000 114410000 91527000 17149 2239 15748 86925;86926 105177 105177 1 SHLEVPLEENVNR Unmodified 1534.774 0.77396981 2427 Q96CT7 CCDC124 Coiled-coil domain-containing protein 124 yes yes 0 0 0 0 By MS/MS 2 0 1 1 38.939 39.024 3 0.039511 9776 20211116_3440_TMUAki_TMT10x_S_F2 40.83 24.94 365410 577390 2978.5 656400 308330 280540 325480 543630 609470 500050 568930 340250 539060 32271 658430 296250 314890 338040 538150 606170 490170 550080 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 365410 577390 2978.5 656400 308330 280540 325480 543630 609470 500050 568930 340250 539060 32271 658430 296250 314890 338040 538150 606170 490170 550080 1 1 1 1 1 1 1 1 1 1 1 10117000 0 10117000 17150 2427 15749 86927 105178 105178 1 SHLEVPLEENVNRR Unmodified 1690.8751 0.87508084 2427 Q96CT7 CCDC124 Coiled-coil domain-containing protein 124 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 34.372 34.227 4 1.9128E-14 8058 20211116_3431_TMUAki_TMT10x_P_F4 155.98 94.602 2009800 3160200 22734 3527900 4492900 3685900 2559700 2287500 2602700 2081100 2767400 1871400 2950100 211660 3575400 4260100 3713800 2698800 2390200 2651800 2041100 2664600 4 4 2 4 4 4 4 4 4 4 4 1761500 2725800 21869 3069100 4254400 3476700 2302300 1952000 2208700 1779900 2360000 1640200 2544700 190400 3112900 4030900 3482400 2434500 2056500 2256500 1745400 2271900 3 3 1 3 3 3 3 3 3 3 3 248350 434400 864.54 458720 238480 209240 257380 335490 394010 301270 407430 231240 405430 21257 462530 229190 231390 264310 333710 395330 295640 392610 1 1 1 1 1 1 1 1 1 1 1 551000000 483650000 67355000 17151 2427 15750 86928;86929;86930 105179;105180;105181;105182 105180 4 SHLFFTAGK Unmodified 1006.5236 0.52361577 3201 Q9UNX4 WDR3 WD repeat-containing protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 44.724 44.572 3 0.002036 13445 20211116_3429_TMUAki_TMT10x_P_F2 72.042 29.443 970680 1557800 23639 1727800 866670 770320 861520 1213200 1171800 1035600 1380700 903980 1454200 101050 1736300 832300 853760 883760 1205800 1185900 1018700 1325400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 970680 1557800 23639 1727800 866670 770320 861520 1213200 1171800 1035600 1380700 903980 1454200 101050 1736300 832300 853760 883760 1205800 1185900 1018700 1325400 1 1 1 1 1 1 1 1 1 1 1 103280000 43627000 59654000 17152 3201 15751 86931;86932;86933 105183;105184 105183 2 SHLIQVER Unmodified 980.54033 0.54032847 3347 Q9Y6D9 MAD1L1 Mitotic spindle assembly checkpoint protein MAD1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 30.249 30.288 3 0.069314 6468 20211116_3431_TMUAki_TMT10x_P_F4 45.972 30.33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17153 3347 15752 86934 105185 105185 1 SHLLDCCPHDILAGTR Unmodified 1863.872 0.87198607 2898 Q9NQ29;Q9NQ29-2;Q9NQ29-3 LUC7L Putative RNA-binding protein Luc7-like 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.92 1.07 1 4 4 3 1 6 7 42.724 42.896 3;4 7.9116E-36 10602 20211116_3434_TMUAki_TMT10x_P_F6 210.08 198.1 15457000 26461000 194170 29792000 24707000 24547000 17385000 22803000 21482000 18423000 24341000 14393000 24703000 1495000 30079000 23511000 25291000 18144000 23142000 21776000 18173000 23392000 18 18 7 18 18 18 18 18 18 18 18 6757900 11000000 69923 12783000 16657000 17165000 9911200 9657800 9344000 7731500 10297000 6292300 10271000 701320 12980000 15802000 17047000 10389000 10141000 9564500 7630400 9903600 7 7 2 7 7 7 7 7 7 7 7 8699200 15461000 124250 17010000 8049900 7382300 7473700 13145000 12138000 10692000 14044000 8100400 14432000 793630 17099000 7709500 8243900 7755400 13001000 12211000 10543000 13488000 11 11 5 11 11 11 11 11 11 11 11 5324000000 3537300000 1786800000 17154 2898 15753 86935;86936;86937;86938;86939;86940;86941;86942;86943;86944;86945;86946;86947 105186;105187;105188;105189;105190;105191;105192;105193;105194;105195;105196;105197;105198;105199;105200;105201;105202;105203;105204 105191 19 SHLLNCCPHDVLSGTR Unmodified 1864.8672 0.86723505 2486 Q9Y383;Q96HJ9-2;Q9Y383-3;Q9Y383-2 LUC7L2 Putative RNA-binding protein Luc7-like 2 yes no 0 0 0 0 By MS/MS 3.5 1.5 1 1 2 35.419 35.287 4 3.6521E-05 9635 20211116_3429_TMUAki_TMT10x_P_F2 87.419 76.313 3283900 5148800 14490 4752300 6334800 7408700 4466500 3670100 3952300 3334700 4195700 3057500 4802800 301410 4915800 6026300 7299600 4612300 3910100 4051900 3270700 4039900 3 3 1 3 3 3 3 3 3 3 3 3283900 5148800 14490 4752300 6334800 7408700 4466500 3670100 3952300 3334700 4195700 3057500 4802800 301410 4915800 6026300 7299600 4612300 3910100 4051900 3270700 4039900 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 191810000 191810000 0 17155 2486 15754 86948;86949 105205;105206;105207 105205 3 SHLVGVKPFEADRANVVGEVR Unmodified 2278.2182 0.21821306 155 O15027;O15027-5;O15027-2;O15027-4;O15027-3 SEC16A Protein transport protein Sec16A yes no 0 0 0 2 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 42.635 42.871 5 4.1639E-07 12482 20211116_3435_TMUAki_TMT10x_P_F7 87.099 77.568 1763200 3036700 21425 3021900 3091000 3410400 2109300 2663700 2666200 2210000 2852200 1641800 2833500 181850 3089700 2940200 3433500 2208100 2732400 2694600 2177100 2745700 2 2 1 2 2 2 2 2 2 2 2 1041900 1701100 21425 1781600 2285100 2694200 1417900 1527900 1546400 1310800 1662500 970240 1587600 123760 1825500 2170600 2662100 1487500 1605900 1571700 1289100 1600100 1 1 1 1 1 1 1 1 1 1 1 721330 1335500 0 1240300 805850 716230 691410 1135800 1119800 899220 1189800 671600 1245800 58088 1264200 769620 771400 720570 1126500 1122900 887970 1145600 1 1 0 1 1 1 1 1 1 1 1 259230000 191290000 67942000 17156 155 15755 86950;86951 105208;105209 105208 2 SHPLDPIDTVDFER Unmodified 1639.7842 0.78420015 1065 P47897;P47897-2 QARS Glutamine--tRNA ligase yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 52.261 52.033 3 0.00021804 17948 20211116_3441_TMUAki_TMT10x_S_F3 81.632 68.204 5291300 8892600 278690 9609000 6105300 7831500 5802400 8111900 7675800 7125900 8157800 4928800 8300400 709820 9725600 5863300 8094100 5959400 8204000 7743900 7000100 7854700 3 3 3 3 3 3 3 3 3 3 3 1526200 2749800 166230 3157100 2794900 4362700 2396000 2517300 2546200 2121000 2594000 1422300 2567300 299220 3210000 2680000 4328600 2455800 2640700 2585400 2087800 2500900 1 1 1 1 1 1 1 1 1 1 1 3765100 6142800 112460 6451900 3310400 3468800 3406400 5594600 5129600 5004800 5563800 3506500 5733000 410600 6515600 3183400 3765500 3503600 5563300 5158500 4912300 5353800 2 2 2 2 2 2 2 2 2 2 2 881610000 567590000 314020000 17157 1065 15756 86952;86953;86954;86955 105210;105211;105212 105212 3 SHQGLDRQELSFAAR Unmodified 1713.8547 0.85467975 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.577 1 4 1 4 2 30.195 30.204 3;4 3.6531E-38 8014 20211116_3433_TMUAki_TMT10x_P_F5 252.73 213.42 6284100 9766300 42132 11685000 10905000 9269400 6733500 7100200 7605900 6631700 8633500 5851000 9120200 578790 11749000 10351000 9543300 7075200 7314500 7736000 6496200 8296600 6 6 3 6 6 6 6 6 6 6 6 3192600 4590600 16631 6018600 7799900 6493100 3672300 3660400 3678000 3293600 4010500 2972700 4288800 341030 6046200 7375900 6521900 3940900 3853600 3753300 3231800 3858500 3 3 2 3 3 3 3 3 3 3 3 3091500 5175800 25501 5666100 3105600 2776300 3061200 3439800 3927900 3338100 4623100 2878300 4831400 237760 5702500 2975400 3021400 3134200 3460800 3982700 3264400 4438200 3 3 1 3 3 3 3 3 3 3 3 2106500000 1684500000 422080000 17158 1092 15757 86956;86957;86958;86959;86960;86961 105213;105214;105215;105216;105217;105218 105215 6 SHSIFLINVK Unmodified 1156.6604 0.66044361 906 P33176 KIF5B Kinesin-1 heavy chain yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 53.944 53.666 3 6.7543E-05 15770 20211116_3440_TMUAki_TMT10x_S_F2 87.895 55.764 4563700 7156900 85134 7649500 6276900 7447900 5127800 5047700 4788800 4380000 5550500 4249800 6680000 481700 7765900 5994900 7546000 5250900 5233300 4913600 4305300 5330800 2 2 2 2 2 2 2 2 2 2 2 2340200 3656600 31490 3761100 3914100 5199600 3059700 2619400 2367800 2232600 2534900 2179100 3412400 245410 3851100 3733400 5150300 3126900 2781900 2445100 2196400 2440200 1 1 1 1 1 1 1 1 1 1 1 2223500 3500300 53645 3888300 2362900 2248400 2068000 2428300 2421000 2147400 3015600 2070700 3267600 236290 3914800 2261500 2395700 2124000 2451400 2468600 2108900 2890700 1 1 1 1 1 1 1 1 1 1 1 495550000 262590000 232960000 17159 906 15758 86962;86963;86964 105219;105220;105221 105220 3 SHTDQLVLIFAGK Unmodified 1427.7773 0.77726428 3183 Q9UMX0;Q9UMX0-2;Q9UMX0-4 UBQLN1 Ubiquilin-1 yes no 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 2 1 64.476 64.549 3 0.00011378 20021 20211116_3436_TMUAki_TMT10x_P_F8 89.43 73.206 34459000 55540000 290410 50717000 36834000 53627000 38072000 38362000 36804000 36023000 45023000 32087000 51807000 3155100 52124000 35367000 54109000 38514000 39704000 37788000 35278000 43177000 4 4 3 4 4 4 4 4 4 4 4 19960000 29729000 264120 28223000 22348000 38401000 22317000 21435000 20400000 20017000 25965000 18587000 27735000 1934400 29051000 21443000 38111000 22580000 22607000 21034000 19608000 24876000 2 2 2 2 2 2 2 2 2 2 2 14498000 25811000 26289 22493000 14487000 15226000 15755000 16928000 16404000 16006000 19057000 13500000 24072000 1220700 23072000 13924000 15998000 15935000 17097000 16754000 15670000 18302000 2 2 1 2 2 2 2 2 2 2 2 1183800000 762370000 421380000 17160 3183 15759 86965;86966;86967 105222;105223;105224;105225;105226 105224 5 SHTEEDCTEELFDFLHAR Unmodified 2234.9539 0.95386103 546 P07919 UQCRH Cytochrome b-c1 complex subunit 6, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 4 2 3 3 64.611 64.437 3;4 6.535E-51 19892 20211116_3428_TMUAki_TMT10x_P_F1 233.78 224.09 29875000 48511000 377340 47518000 31368000 42168000 32727000 29010000 29033000 27980000 36019000 27817000 45262000 2275300 48466000 30120000 42993000 33011000 30129000 29946000 27369000 34530000 10 10 5 10 10 10 10 10 10 10 10 17087000 26133000 128430 25137000 16694000 27861000 18714000 15911000 15790000 13990000 19128000 15909000 24381000 1009600 25754000 16055000 27946000 18787000 16722000 16310000 13742000 18349000 6 6 2 6 6 6 6 6 6 6 6 12788000 22378000 248910 22381000 14674000 14308000 14013000 13100000 13243000 13990000 16891000 11908000 20881000 1265700 22711000 14066000 15047000 14225000 13407000 13635000 13626000 16181000 4 4 3 4 4 4 4 4 4 4 4 10591000000 5792100000 4799100000 17161 546 15760 86968;86969;86970;86971;86972;86973 105227;105228;105229;105230;105231;105232;105233;105234;105235;105236 105230 10 SHTFPELAYR Unmodified 1219.5986 0.59857163 2941 Q9NSD9;Q9NSD9-2 FARSB Phenylalanine--tRNA ligase beta subunit yes no 0 0 0 0 By MS/MS By MS/MS 5.83 0.687 2 3 1 3 3 38.613 38.759 3 2.8651E-09 8678 20211116_3445_TMUAki_TMT10x_S_F6 142.36 127.35 1583100 2550100 10535 2847100 3599700 3252500 2185600 2698600 2704200 2141300 2634300 1474100 2380600 169000 2889600 3416600 3276000 2307000 2755000 2725900 2114200 2543300 4 4 3 4 4 4 4 4 4 4 4 1082800 1783800 7694.1 1981100 3111800 2834400 1712400 1838700 1910500 1513500 1872900 1008300 1665200 125040 2019900 2949000 2812500 1816300 1910000 1933600 1491500 1807900 3 3 2 3 3 3 3 3 3 3 3 500320 766320 2841.1 865980 487860 418080 473180 859920 793750 627780 761390 465870 715430 43954 869710 467590 463470 490660 845060 792330 622680 735490 1 1 1 1 1 1 1 1 1 1 1 419770000 344290000 75474000 17162 2941 15761 86974;86975;86976;86977;86978;86979 105237;105238;105239;105240;105241;105242 105242 6 SHTGERPFQCSLCSYASR Unmodified 2141.9371 0.93710553 1111 P49711;P49711-2 CTCF Transcriptional repressor CTCF yes no 0 0 0 1 By matching By MS/MS 1.67 0.943 2 1 1 2 33.886 33.81 4 0.023144 9502 20211116_3439_TMUAki_TMT10x_S_F1 43.543 26.663 130930 269660 7884.4 266460 134020 120180 127230 175410 205740 178380 232930 121970 251610 18247 269880 128810 132700 131840 175650 206840 174090 223860 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 130930 269660 7884.4 266460 134020 120180 127230 175410 205740 178380 232930 121970 251610 18247 269880 128810 132700 131840 175650 206840 174090 223860 1 1 1 1 1 1 1 1 1 1 1 81542000 27487000 54055000 17163 1111 15762 86980;86981;86982 105243 105243 1 SHTILLVQPTK Acetyl (Protein N-term) 1277.7343 0.73433683 1454 P84090 ERH Enhancer of rudimentary homolog yes yes 1 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 49.95 50.244 2 1.8064E-19 13829 20211116_3445_TMUAki_TMT10x_S_F6 113.62 85.798 31698000 52507000 57789 62274000 46684000 52236000 34076000 44056000 45593000 44566000 46542000 29510000 49031000 2303200 62689000 44411000 53650000 35581000 45221000 45913000 43505000 44868000 7 7 2 7 7 7 7 7 7 7 7 14764000 23534000 708.75 28359000 32095000 37118000 20285000 20083000 20333000 20738000 21604000 13744000 21978000 1067600 28721000 30451000 36891000 21195000 21299000 20728000 20227000 20802000 3 3 1 3 3 3 3 3 3 3 3 16934000 28973000 57081 33915000 14589000 15118000 13792000 23973000 25261000 23828000 24938000 15767000 27053000 1235500 33968000 13960000 16759000 14386000 23922000 25185000 23278000 24066000 4 4 1 4 4 4 4 4 4 4 4 11332000000 6079900000 5251800000 17164 1454 15763 86983;86984;86985;86986;86987;86988 105244;105245;105246;105247;105248;105249;105250 105248 7 SHTILLVQPTKRPEGR Acetyl (Protein N-term) 1873.0534 0.05337956 1454 P84090 ERH Enhancer of rudimentary homolog yes yes 1 0 0 2 By MS/MS By MS/MS 2.17 1.86 5 5 1 1 4 8 32.69 32.634 2;3;4 1.3847E-53 10279 20211116_3439_TMUAki_TMT10x_S_F1 140.45 112.81 16245000 26948000 57475 25374000 24679000 21603000 19265000 21633000 23361000 18774000 21428000 15126000 25139000 1415200 25941000 23524000 22241000 19952000 21908000 23518000 18454000 20731000 11 11 4 11 11 11 11 11 11 11 11 2543700 4049600 5712.6 4297600 8263800 8433500 4379800 5744000 6130200 4370800 4794400 2368200 3779600 265230 4428600 7824400 8275900 4699900 5934700 6112400 4325400 4666300 5 5 1 5 5 5 5 5 5 5 5 13702000 22898000 51763 21077000 16415000 13170000 14886000 15889000 17231000 14404000 16634000 12757000 21360000 1150000 21512000 15700000 13965000 15252000 15973000 17406000 14128000 16065000 6 6 3 6 6 6 6 6 6 6 6 10301000000 6145700000 4155000000 17165 1454 15764 86989;86990;86991;86992;86993;86994;86995;86996;86997;86998;86999;87000 105251;105252;105253;105254;105255;105256;105257;105258;105259;105260;105261;105262 105258 12 SHTVFTVTLEQR Unmodified 1416.7361 0.73612775 1876 Q2M1P5 KIF7 Kinesin-like protein KIF7 yes yes 0 0 0 0 By MS/MS 7 0 1 1 39.388 40.048 3 0.0016429 11758 20211116_3446_TMUAki_TMT10x_S_F7 67.519 51.655 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17166 1876 15765 87001 105263 105263 1 SHYVLYGLVAAMQPR Oxidation (M) 1719.8767 0.87666075 1609 Q13200;Q13200-3;Q13200-2 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 1 0 By MS/MS 3.5 0.5 1 1 2 53.413 53.039 3 0.00019276 16041 20211116_3442_TMUAki_TMT10x_S_F4 76.01 52.178 1496500 2626900 10234 2884100 1699200 1258500 1409000 1990900 1716100 1870700 2310700 1393400 2452200 136440 2899800 1622600 1398800 1453900 1983600 1753500 1832000 2210700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1496500 2626900 10234 2884100 1699200 1258500 1409000 1990900 1716100 1870700 2310700 1393400 2452200 136440 2899800 1622600 1398800 1453900 1983600 1753500 1832000 2210700 1 1 1 1 1 1 1 1 1 1 1 138550000 0 138550000 17167 1609 15766 87002;87003 105264;105265 105265 2160 2 SIAFHSAVSLDPIK Unmodified 1483.8035 0.80347903 3284 Q9Y3F4;Q9Y3F4-2 STRAP Serine-threonine kinase receptor-associated protein yes no 0 0 0 0 By MS/MS By MS/MS 2.6 1.36 2 1 2 3 2 57.731 57.553 3 0.0028668 19172 20211116_3430_TMUAki_TMT10x_P_F3 62.035 28.149 11736000 16020000 114130 16346000 11710000 18519000 12845000 12905000 12377000 11826000 18382000 10928000 14950000 1061000 16685000 11262000 18605000 12955000 13372000 12825000 11595000 17547000 2 2 1 2 2 2 2 2 2 2 2 11736000 16020000 114130 16346000 11710000 18519000 12845000 12905000 12377000 11826000 18382000 10928000 14950000 1061000 16685000 11262000 18605000 12955000 13372000 12825000 11595000 17547000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 886520000 737050000 149470000 17168 3284 15767 87004;87005;87006;87007;87008 105266;105267;105268;105269 105267 4 SIAFPSIGSGR Unmodified 1090.5771 0.57710791 327 O75367;O75367-2;O75367-3 H2AFY Core histone macro-H2A.1 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 2.69 2 2 2 2 4 4 54.61 54.443 2 2.499E-24 15771 20211116_3428_TMUAki_TMT10x_P_F1 256.47 167.1 33794000 53703000 147330 62070000 55599000 66335000 39609000 54333000 55225000 46482000 50568000 31465000 50142000 3044800 62794000 52904000 67045000 41496000 55613000 55333000 45720000 48925000 8 8 3 8 8 8 8 8 8 8 8 22504000 34716000 143240 40042000 45012000 56576000 31361000 36015000 36668000 30777000 33451000 20953000 32413000 2187000 40720000 42817000 56154000 32689000 37499000 36957000 30274000 32368000 5 5 2 5 5 5 5 5 5 5 5 11290000 18988000 4093.7 22028000 10586000 9759100 8247600 18318000 18557000 15705000 17117000 10512000 17729000 857810 22074000 10087000 10891000 8807300 18114000 18376000 15446000 16557000 3 3 1 3 3 3 3 3 3 3 3 8071800000 4539700000 3532200000 17169 327 15768 87009;87010;87011;87012;87013;87014;87015;87016 105270;105271;105272;105273;105274;105275;105276;105277;105278;105279 105271 10 SIAPSIFGGTDMKK Oxidation (M) 1466.7439 0.74391524 912 P33992 MCM5 DNA replication licensing factor MCM5 yes yes 0 0 1 1 By MS/MS 1 0 1 1 51.488 51.488 3 0.0014929 14603 20211116_3428_TMUAki_TMT10x_P_F1 64.499 50.535 8997800 14069000 0 16818000 20558000 24473000 13382000 13094000 14736000 12685000 13358000 8377200 13138000 827810 17078000 19526000 24204000 13991000 13875000 14883000 12406000 12928000 3 3 0 3 3 3 3 3 3 3 3 8997800 14069000 0 16818000 20558000 24473000 13382000 13094000 14736000 12685000 13358000 8377200 13138000 827810 17078000 19526000 24204000 13991000 13875000 14883000 12406000 12928000 3 3 0 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 249280000 249280000 0 17170 912 15769 87017 105280;105281;105282 105280 1136 3 SIAQYWLGCPVPGQA Unmodified 1645.7923 0.79226242 56 CON__Q3ZBS7 yes yes 0 0 0 0 By MS/MS 2 0 2 2 79.516 79.499 2;3 0.016346 27558 20211116_3429_TMUAki_TMT10x_P_F2 49.188 38.282 + 3209000 5285500 141400 5643900 2312900 3888100 3191100 2091100 2131000 2454300 3332500 2989000 4933200 385290 5706100 2248300 4028800 3158200 2227600 2257000 2382000 3177600 1 1 1 1 1 1 1 1 1 1 1 3209000 5285500 141400 5643900 2312900 3888100 3191100 2091100 2131000 2454300 3332500 2989000 4933200 385290 5706100 2248300 4028800 3158200 2227600 2257000 2382000 3177600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1291600000 1291600000 0 17171 56 15770 87018;87019 105283;105284 105284 2 SIAVLELICDVHNPGQDLVIHR Unmodified 2497.3111 0.31112716 3159 Q9UKN8 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 0 0 0 0 By MS/MS 7 0 1 1 76.986 77.08 4 4.9728E-14 26588 20211116_3435_TMUAki_TMT10x_P_F7 122.94 103.9 3815300 6440900 0 5143600 3654200 7554200 4354200 3848200 3554700 4116400 4407900 3552400 6005200 311210 5375000 3521300 7463800 4355300 4107600 3681600 4009200 4225800 1 1 0 1 1 1 1 1 1 1 1 3815300 6440900 0 5143600 3654200 7554200 4354200 3848200 3554700 4116400 4407900 3552400 6005200 311210 5375000 3521300 7463800 4355300 4107600 3681600 4009200 4225800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 810700000 810700000 0 17172 3159 15771 87020 105285 105285 1 SICEVLDLER Unmodified 1232.6071 0.60708741 942 P35659;P35659-2 DEK Protein DEK yes no 0 0 0 0 By MS/MS By MS/MS 2.71 1.03 1 2 2 2 4 3 64.257 64.036 2 5.0166E-09 20615 20211116_3442_TMUAki_TMT10x_S_F4 178.32 119.73 72291000 117190000 303430 124910000 83803000 106980000 80337000 66513000 49503000 68886000 84737000 67310000 109380000 6051700 126620000 80261000 109180000 80716000 69739000 52960000 67180000 80652000 13 13 7 13 13 13 13 13 13 13 13 40342000 64055000 175190 68091000 52402000 79543000 48952000 37693000 28855000 39015000 47437000 37562000 59786000 3470000 69351000 50156000 79387000 49212000 40475000 30893000 38049000 45186000 8 8 5 8 8 8 8 8 8 8 8 31949000 53133000 128250 56819000 31402000 27434000 31385000 28820000 20649000 29871000 37300000 29747000 49593000 2581700 57265000 30105000 29792000 31504000 29263000 22067000 29130000 35466000 5 5 2 5 5 5 5 5 5 5 5 5957700000 3234000000 2723800000 17173 942 15772 87021;87022;87023;87024;87025;87026;87027 105286;105287;105288;105289;105290;105291;105292;105293;105294;105295;105296;105297;105298;105299 105299 14 SICTTVLELLDK Unmodified 1390.7378 0.73776723 825 P27348 YWHAQ 14-3-3 protein theta yes yes 0 0 0 0 By MS/MS By MS/MS 6.4 0.49 3 2 2 3 80.172 80.187 2;3 1.8098E-07 26196 20211116_3445_TMUAki_TMT10x_S_F6 110.74 77.899 21507000 33604000 0 43562000 19466000 26786000 19816000 12362000 10211000 14635000 20574000 20024000 31393000 1500000 43486000 18657000 27998000 19784000 13365000 11176000 14200000 19526000 3 3 0 3 3 3 3 3 3 3 3 19530000 30045000 0 39491000 17094000 24573000 17214000 10729000 8892400 13062000 18256000 18182000 28070000 1383800 39397000 16380000 25642000 17197000 11677000 9742900 12661000 17321000 2 2 0 2 2 2 2 2 2 2 2 1977900 3559000 0 4071000 2372400 2213000 2601500 1633200 1319000 1573600 2318200 1841200 3322800 116220 4089100 2277100 2356000 2587200 1688000 1433400 1539300 2205400 1 1 0 1 1 1 1 1 1 1 1 3151900000 1255100000 1896800000 17174 825 15773 87028;87029;87030;87031;87032 105300;105301;105302;105303 105303 4 SIDFPLTK Unmodified 919.50148 0.50148335 363 O75844 ZMPSTE24 CAAX prenyl protease 1 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 60.733 60.756 2 0.006004 17828 20211116_3434_TMUAki_TMT10x_P_F6 86.67 34.267 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17175 363 15774 87033;87034 105304;105305 105304 2 SIDGTADDEDEGVPTDQAIR Unmodified 2102.924 0.92400069 2945 Q9NTI5;Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 0 0 0 0 By MS/MS 1 0 1 1 46.071 46.071 3 2.7907E-16 12428 20211116_3428_TMUAki_TMT10x_P_F1 136.66 124.89 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17176 2945 15775 87035 105306 105306 1 SIDNGIFVQLVQANSPASLVGLR Unmodified 2397.3016 0.30160833 101 O00560;O00560-2;O00560-3 SDCBP Syntenin-1 yes no 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 80.769 80.743 3 8.3225E-46 27395 20211116_3442_TMUAki_TMT10x_S_F4 200.23 176.55 997940 1647000 27808 1565300 1331300 1105500 1413700 946390 893380 1029100 1158700 929390 1536500 113320 1595700 1280200 1151000 1413600 972730 941040 1001600 1109500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 997940 1647000 27808 1565300 1331300 1105500 1413700 946390 893380 1029100 1158700 929390 1536500 113320 1595700 1280200 1151000 1413600 972730 941040 1001600 1109500 1 1 1 1 1 1 1 1 1 1 1 743550000 0 743550000 17177 101 15776 87036;87037 105307 105307 1 SIDQFANLVLHQTVER Unmodified 1868.9745 0.97446054 162 O15116 LSM1 U6 snRNA-associated Sm-like protein LSm1 yes yes 0 0 0 0 By MS/MS 7 0 1 1 76.796 76.905 3 0.00019024 26537 20211116_3435_TMUAki_TMT10x_P_F7 78.021 55.104 3198400 5446200 19978 5290500 3099100 6323700 3817500 3752800 3615800 3983500 4353600 2978200 5081300 282400 5423600 2990900 6320700 3828500 3952200 3713500 3881000 4176900 1 1 1 1 1 1 1 1 1 1 1 3198400 5446200 19978 5290500 3099100 6323700 3817500 3752800 3615800 3983500 4353600 2978200 5081300 282400 5423600 2990900 6320700 3828500 3952200 3713500 3881000 4176900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 370410000 370410000 0 17178 162 15777 87038 105308 105308 1 SIDTFFGVK Unmodified 1012.5229 0.52294707 1942 Q5TBB1 RNASEH2B Ribonuclease H2 subunit B yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 69.173 69.343 2 2.9396E-05 21495 20211116_3447_TMUAki_TMT10x_S_F8 132.9 56 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17179 1942 15778 87039;87040 105309;105310 105310 2 SIDTGMGLER Unmodified 1077.5125 0.51245874 1104 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS 3 0 1 1 41.726 41.78 2 0.0079064 12607 20211116_3430_TMUAki_TMT10x_P_F3 71.349 30.32 473790 707840 27261 897830 1176500 989790 698080 480120 532990 501660 682330 441350 661200 74528 903890 1117700 991210 728000 514520 554750 489060 653590 1 1 1 1 1 1 1 1 1 1 1 473790 707840 27261 897830 1176500 989790 698080 480120 532990 501660 682330 441350 661200 74528 903890 1117700 991210 728000 514520 554750 489060 653590 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31287000 31287000 0 17180 1104 15779 87041 105311 105311 1 SIEAVHEDIR Unmodified 1167.5884 0.58840088 790 P23919;P23919-2 DTYMK Thymidylate kinase yes no 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 33.213 33.102 3 3.6996E-09 10216 20211116_3441_TMUAki_TMT10x_S_F3 135.8 102.44 1904200 2915800 0 2251300 3234900 3475900 2141300 2135600 2370000 1774000 2094100 1772900 2718200 168290 2362000 3073800 3435300 2236200 2228200 2391300 1747400 2028600 2 2 0 2 2 2 2 2 2 2 2 1904200 2915800 0 2251300 3234900 3475900 2141300 2135600 2370000 1774000 2094100 1772900 2718200 168290 2362000 3073800 3435300 2236200 2228200 2391300 1747400 2028600 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 127400000 127400000 0 17181 790 15780 87042;87043;87044;87045 105312;105313;105314;105315 105315 4 SIEEACFTLQYLNK Unmodified 1714.8236 0.82362212 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.46 0.929 2 5 4 2 6 7 75.259 75.268 2;3 3.3386E-62 26216 20211116_3446_TMUAki_TMT10x_S_F7 315.72 281.18 38666000 66535000 387180 56090000 48384000 66059000 49253000 50017000 42037000 48060000 52831000 36004000 62045000 3626000 58108000 46433000 66321000 49690000 51605000 43465000 47019000 50630000 11 11 7 11 11 11 11 11 11 11 11 18252000 31018000 248160 26309000 19527000 40020000 22736000 23397000 19595000 21973000 23875000 16996000 28926000 1706800 27377000 18816000 39551000 22797000 24585000 20223000 21519000 22898000 5 5 4 5 5 5 5 5 5 5 5 20414000 35517000 139020 29781000 28857000 26039000 26517000 26620000 22443000 26087000 28957000 19008000 33119000 1919300 30731000 27617000 26771000 26894000 27020000 23241000 25500000 27732000 6 6 3 6 6 6 6 6 6 6 6 7028200000 3254900000 3773300000 17182 1057 15781 87046;87047;87048;87049;87050;87051;87052;87053;87054;87055;87056;87057;87058 105316;105317;105318;105319;105320;105321;105322;105323;105324;105325;105326;105327;105328;105329;105330 105328 15 SIEEACLTLQHLNR Unmodified 1682.841 0.84100352 1435 P78559;P78559-2 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 1 3 52.766 52.904 3 7.3057E-14 15815 20211116_3433_TMUAki_TMT10x_P_F5 141.45 124.96 11098000 18611000 114080 19465000 14005000 14839000 11363000 15491000 15285000 14290000 15668000 10334000 17369000 1056600 19728000 13369000 15417000 11785000 15681000 15392000 14006000 15103000 4 4 2 4 4 4 4 4 4 4 4 2585500 4362600 78366 4804900 5505200 7055500 3804900 4112500 3916900 3766600 3955000 2408000 4072400 328290 4904200 5240700 6982700 3951900 4319500 3981200 3692900 3814100 1 1 1 1 1 1 1 1 1 1 1 8512200 14248000 35711 14660000 8500000 7783400 7557700 11378000 11368000 10523000 11713000 7925800 13297000 728310 14824000 8128000 8434100 7833400 11362000 11410000 10313000 11289000 3 3 1 3 3 3 3 3 3 3 3 850330000 202970000 647370000 17183 1435 15782 87059;87060;87061;87062 105331;105332;105333;105334 105331 4 SIEEIVR Unmodified 844.46543 0.46543219 978 P39748;P39748-2 FEN1 Flap endonuclease 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 42.501 42.312 2 0.04628 13966 20211116_3441_TMUAki_TMT10x_S_F3 71.134 20.502 28187000 44071000 83651 59005000 53668000 34485000 29918000 23680000 23085000 20041000 35285000 26242000 41179000 2394100 58773000 50843000 36401000 31378000 24513000 24217000 19723000 33660000 3 3 1 3 3 3 3 3 3 3 3 13558000 19607000 0 27945000 40286000 26151000 20370000 11561000 11985000 10775000 16585000 12622000 18327000 1186500 27893000 38107000 26423000 21444000 12468000 12723000 10556000 15857000 1 1 0 1 1 1 1 1 1 1 1 14629000 24464000 83651 31060000 13381000 8334500 9548500 12119000 11099000 9265800 18699000 13621000 22852000 1207700 30881000 12735000 9977400 9933800 12045000 11493000 9167000 17803000 2 2 1 2 2 2 2 2 2 2 2 505390000 221630000 283770000 17184 978 15783 87063;87064;87065 105335 105335 1 SIEEQLGTEIKPIPSNIDK Unmodified 2110.1158 0.11576462 810 P26196 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 0 0 0 1 By MS/MS By MS/MS 5.75 0.661 3 4 1 5 3 63.021 63.152 3;4 1.4295E-50 18913 20211116_3444_TMUAki_TMT10x_S_F5 228.01 205.54 77614000 137190000 1906700 138970000 100510000 130560000 87437000 112720000 107850000 105050000 114270000 72278000 128020000 8261400 141520000 96141000 133120000 90006000 115280000 109050000 102920000 110030000 12 12 11 12 12 12 12 12 12 12 12 41484000 71671000 507000 72291000 62080000 93956000 55563000 59951000 56408000 53618000 59463000 38627000 66879000 3929300 74029000 59374000 93615000 56727000 62481000 57457000 52627000 57267000 7 7 6 7 7 7 7 7 7 7 7 36130000 65521000 1399700 66674000 38429000 36605000 31873000 52768000 51443000 51436000 54806000 33651000 61142000 4332100 67488000 36767000 39508000 33279000 52795000 51598000 50290000 52765000 5 5 5 5 5 5 5 5 5 5 5 10119000000 5868100000 4251300000 17185 810 15784 87066;87067;87068;87069;87070;87071;87072;87073 105336;105337;105338;105339;105340;105341;105342;105343;105344;105345;105346;105347 105343 12 SIEGTADDEEEGVSPDTAIR Unmodified 2089.9288 0.92875172 1875 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 46.66 46.544 3 6.3326E-42 14688 20211116_3439_TMUAki_TMT10x_S_F1 212.59 196.64 1484400 2394700 4522.3 3081500 1957000 2403100 1494100 2321800 2588700 1940600 2230700 1382100 2237000 121960 3085000 1864300 2488100 1573600 2353400 2572900 1911000 2163000 3 3 1 3 3 3 3 3 3 3 3 612080 940530 0 1179900 1403200 1905300 1050700 887340 1092800 783460 956450 569850 878510 53900 1197700 1336000 1873400 1085500 950450 1105100 769450 926870 1 1 0 1 1 1 1 1 1 1 1 872370 1454100 4522.3 1901600 553830 497770 443350 1434500 1495800 1157100 1274300 812260 1358500 68057 1887300 528270 614730 488070 1402900 1467800 1141500 1236100 2 2 1 2 2 2 2 2 2 2 2 385780000 216370000 169410000 17186 1875 15785 87074;87075 105348;105349;105350 105350 3 SIEIPRPVDGVEVPGCGK Unmodified 1907.9775 0.977497 812 P26368;P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 0 0 0 1 By MS/MS By MS/MS 5.62 0.992 1 3 2 2 4 4 56.913 57.201 2;3 8.1906E-52 17588 20211116_3433_TMUAki_TMT10x_P_F5 230.26 204.92 78182000 137680000 193710 147180000 106360000 127430000 84846000 111960000 106840000 107340000 111880000 72786000 128510000 5718700 149180000 101370000 130690000 87869000 114480000 107910000 105020000 107770000 8 8 3 8 8 8 8 8 8 8 8 34779000 57604000 31805 63204000 64485000 89429000 52635000 47837000 48015000 46619000 48831000 32375000 53771000 2280400 64475000 61467000 88552000 53867000 50700000 49079000 45580000 47080000 4 4 2 4 4 4 4 4 4 4 4 43403000 80081000 161900 83977000 41873000 38003000 32211000 64125000 58828000 60718000 63050000 40411000 74739000 3438300 84708000 39898000 42138000 34002000 63777000 58832000 59441000 60691000 4 4 1 4 4 4 4 4 4 4 4 16258000000 8994700000 7262900000 17187 812 15786 87076;87077;87078;87079;87080;87081;87082;87083 105351;105352;105353;105354;105355;105356;105357;105358;105359;105360 105352 10 SIELFYK Unmodified 898.48002 0.48001963 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By matching By MS/MS 6.67 0.471 1 2 1 2 62.245 62.831 2 0.0036931 21105 20211116_3446_TMUAki_TMT10x_S_F7 117.17 68.665 6267300 11234000 0 11824000 6864600 6535800 6091900 9033300 8537800 8460300 9674200 5835400 10485000 507980 11941000 6561400 7040600 6295400 9041300 8619100 8286400 9297200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6267300 11234000 0 11824000 6864600 6535800 6091900 9033300 8537800 8460300 9674200 5835400 10485000 507980 11941000 6561400 7040600 6295400 9041300 8619100 8286400 9297200 1 1 0 1 1 1 1 1 1 1 1 1386800000 702890000 683950000 17188 1433 15787 87084;87085;87086 105361;105362 105362 2 SIEVIENR Unmodified 958.50836 0.50835964 1091 P49321;P49321-3;P49321-4;P49321-2 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 0 By MS/MS By MS/MS 3.86 2.33 2 2 5 1 1 1 2 8 6 35.599 35.66 2 0.00041051 5795 20211116_3430_TMUAki_TMT10x_P_F3 141.52 74.483 28099000 40865000 146000 47036000 35439000 46281000 32235000 29450000 30338000 29387000 37231000 26163000 38155000 2440600 47537000 33900000 46816000 32806000 30790000 31192000 28703000 35702000 20 20 6 20 20 20 20 20 20 20 20 20993000 30151000 12435 34222000 28765000 39794000 25450000 21534000 22468000 21858000 28022000 19546000 28150000 1761200 34707000 27492000 39785000 25896000 22825000 23185000 21334000 26860000 13 13 3 13 13 13 13 13 13 13 13 7105800 10714000 133560 12814000 6674000 6486400 6784600 7916300 7870300 7528700 9208700 6617000 10005000 679470 12830000 6408400 7030400 6909700 7965000 8006700 7368900 8841800 7 7 3 7 7 7 7 7 7 7 7 5238400000 2984200000 2254200000 17189 1091 15788 87087;87088;87089;87090;87091;87092;87093;87094;87095;87096;87097;87098;87099;87100 105363;105364;105365;105366;105367;105368;105369;105370;105371;105372;105373;105374;105375;105376;105377;105378;105379;105380;105381;105382;105383;105384 105366 22 SIFDGFR Unmodified 840.413 0.41300269 391 O94888 UBXN7 UBX domain-containing protein 7 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 58.208 58.834 2 0.0016684 18898 20211116_3435_TMUAki_TMT10x_P_F7 134.85 96.015 7157600 11245000 86350 11631000 8997000 11356000 8070600 8789200 8336900 8410500 9526400 6665100 10494000 699650 11834000 8608700 11528000 8243100 9054500 8511900 8229700 9153000 2 2 2 2 2 2 2 2 2 2 2 3593400 5527900 48603 5731400 5608600 7866400 4454100 4387300 4213100 4238200 4714000 3346200 5158900 371440 5864500 5351700 7803900 4570900 4631900 4314500 4145400 4531900 1 1 1 1 1 1 1 1 1 1 1 3564200 5716700 37746 5899600 3388400 3489600 3616600 4401900 4123800 4172300 4812400 3318900 5335000 328210 5969600 3257000 3724100 3672200 4422600 4197500 4084300 4621000 1 1 1 1 1 1 1 1 1 1 1 473440000 269510000 203930000 17190 391 15789 87101;87102 105385;105386 105385 2 SIFDGFRDFQTETIR Unmodified 1830.8901 0.89006221 391 O94888 UBXN7 UBX domain-containing protein 7 yes yes 0 0 0 1 By MS/MS 7 0 1 1 70.669 70.911 3 2.5057E-14 24449 20211116_3446_TMUAki_TMT10x_S_F7 130.29 109.63 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17191 391 15790 87103 105387 105387 1 SIFDHIK Unmodified 858.45995 0.45995289 3018 Q9NYF8;Q9NYF8-2;Q9NYF8-4;Q9NYF8-3 BCLAF1 Bcl-2-associated transcription factor 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 46.349 46.675 3 0.00047302 14009 20211116_3435_TMUAki_TMT10x_P_F7 143.11 31.459 4248900 6424200 51952 7731500 8168000 7796500 4466800 5117200 6140800 5279300 6068900 3956500 5999300 455570 7796000 7741900 7878300 4776200 5342900 6171400 5149400 5856600 2 2 2 2 2 2 2 2 2 2 2 2512100 3729600 37809 4437800 6938700 6240600 2898100 2856600 3348600 2948000 3420500 2339300 3482800 305510 4504200 6553800 6170300 3164900 3077900 3389500 2875400 3297400 1 1 1 1 1 1 1 1 1 1 1 1736700 2694600 14143 3293700 1229300 1555900 1568700 2260600 2792200 2331300 2648300 1617200 2516600 150060 3291800 1188100 1708100 1611300 2265000 2781900 2274000 2559200 1 1 1 1 1 1 1 1 1 1 1 587730000 407500000 180230000 17192 3018 15791 87104;87105;87106;87107 105388;105389 105388 2 SIFDHIKLPQASK Unmodified 1482.8195 0.81946344 3018 Q9NYF8;Q9NYF8-2;Q9NYF8-4;Q9NYF8-3 BCLAF1 Bcl-2-associated transcription factor 1 yes no 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 55.675 55.458 4 1.3694E-11 18288 20211116_3430_TMUAki_TMT10x_P_F3 148.41 120.11 12395000 19699000 11300 19866000 21910000 30754000 15566000 20975000 18987000 16766000 17785000 11541000 18382000 1133300 20418000 20847000 30439000 16227000 21694000 19124000 16548000 17194000 4 4 1 4 4 4 4 4 4 4 4 10740000 16705000 0 17091000 20257000 29434000 13999000 18657000 16932000 14878000 15436000 9999300 15589000 985550 17593000 19264000 28982000 14618000 19400000 17044000 14686000 14937000 3 3 0 3 3 3 3 3 3 3 3 1655500 2994600 11300 2775300 1652700 1320800 1567400 2318600 2054500 1888000 2349000 1541600 2793500 147750 2825000 1583200 1457700 1609400 2294100 2079300 1861700 2256900 1 1 1 1 1 1 1 1 1 1 1 1946100000 1472200000 473890000 17193 3018 15792 87108;87109;87110 105390;105391;105392 105392 3 SIFGEDALANVSIEKPIHQGPDAAVTGHIR Unmodified 3141.6207 0.62071064 1206 P53618 COPB1 Coatomer subunit beta yes yes 0 0 0 1 By MS/MS By MS/MS 6.71 1.03 1 2 2 2 4 3 60.699 60.932 5 1.0981E-26 18341 20211116_3445_TMUAki_TMT10x_S_F6 143.35 135.71 49262000 94206000 215440 77460000 62743000 104390000 66958000 75928000 76351000 78422000 73645000 45866000 87841000 2638300 80607000 60254000 104040000 67989000 78710000 77167000 76488000 71126000 12 12 4 12 12 12 12 12 12 12 12 24968000 45020000 180480 37976000 32068000 69769000 36022000 37077000 38835000 37069000 35145000 23248000 41982000 1426500 39714000 30847000 68380000 36419000 39347000 39254000 36204000 34018000 6 6 2 6 6 6 6 6 6 6 6 24293000 49186000 34962 39484000 30676000 34617000 30936000 38852000 37515000 41353000 38500000 22618000 45859000 1211800 40893000 29408000 35661000 31570000 39363000 37912000 40284000 37109000 6 6 2 6 6 6 6 6 6 6 6 15853000000 8696900000 7155900000 17194 1206 15793 87111;87112;87113;87114;87115;87116;87117 105393;105394;105395;105396;105397;105398;105399;105400;105401;105402;105403;105404 105399 12 SIFKPFIFVDDVK Unmodified 1553.8494 0.84936659 1561 Q12765;Q12765-2;Q12765-3 SCRN1 Secernin-1 yes no 0 0 0 1 By MS/MS By MS/MS 2.83 1.42 2 4 11 1 6 12 63.354 63.281 2;3 1.0364E-09 28347 20211116_3441_TMUAki_TMT10x_S_F3 137.52 103.13 205220000 329950000 1973400 310150000 210760000 363210000 194830000 228240000 184410000 229510000 248850000 191100000 307800000 18700000 318590000 201790000 363710000 198140000 238910000 190350000 224100000 238070000 14 14 11 14 14 14 14 14 14 14 14 119810000 191290000 951440 166430000 115680000 237710000 112130000 124610000 116750000 133800000 142870000 111560000 178400000 10534000 172610000 110870000 235220000 114070000 132680000 119500000 130300000 137010000 5 5 4 5 5 5 5 5 5 5 5 85415000 138660000 1022000 143720000 95078000 125500000 82700000 103630000 67659000 95707000 105990000 79537000 129400000 8166400 145990000 90916000 128480000 84068000 106230000 70849000 93799000 101050000 9 9 7 9 9 9 9 9 9 9 9 25134000000 13395000000 11739000000 17195 1561 15794 87118;87119;87120;87121;87122;87123;87124;87125;87126;87127;87128;87129;87130;87131;87132;87133;87134;87135 105405;105406;105407;105408;105409;105410;105411;105412;105413;105414;105415;105416;105417;105418;105419;105420;105421;105422;105423;105424 105419 20 SIFLVAHRK Unmodified 1069.6396 0.63964859 1748 Q15005 SPCS2 Signal peptidase complex subunit 2 yes yes 0 0 0 1 By matching By MS/MS 5 0 2 1 1 36.536 36.603 4 0.00088891 8170 20211116_3444_TMUAki_TMT10x_S_F5 88.948 19.35 180000 278100 4283.6 295220 202540 168360 179700 204170 189120 189470 258050 167630 259560 19231 298070 193890 180140 183760 205340 194430 185650 246790 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 180000 278100 4283.6 295220 202540 168360 179700 204170 189120 189470 258050 167630 259560 19231 298070 193890 180140 183760 205340 194430 185650 246790 1 1 1 1 1 1 1 1 1 1 1 56127000 31859000 24268000 17196 1748 15795 87136;87137 105425 105425 1 SIFQHIQSAQSQR Unmodified 1528.7746 0.77463852 3252 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 4.29 2.76 1 2 1 1 2 3 4 37.121 37.165 3 2.1495E-05 10595 20211116_3429_TMUAki_TMT10x_P_F2 100.13 80.02 4194800 6538900 144760 7691000 5778100 6092100 4448500 5173800 5390900 4646500 5876100 3906900 6105800 503930 7740800 5515600 6284200 4611000 5290900 5460300 4559800 5653400 6 6 5 6 6 6 6 6 6 6 6 1819300 2630400 53420 2899400 3602200 4042900 2268300 2098000 2189300 1927900 2422600 1694400 2455400 225590 2956000 3423700 4004400 2368200 2226200 2238900 1889900 2329800 3 3 3 3 3 3 3 3 3 3 3 2375500 3908500 91338 4791600 2175900 2049200 2180100 3075800 3201600 2718600 3453500 2212500 3650400 278340 4784900 2091900 2279800 2242800 3064700 3221300 2669900 3323600 3 3 2 3 3 3 3 3 3 3 3 715370000 410920000 304440000 17197 3252 15796 87138;87139;87140;87141;87142;87143;87144 105426;105427;105428;105429;105430;105431 105426 6 SIFSGIGSTAEPVSQSTTSDYQWDVSR Unmodified 2904.3414 0.34136048 2105 Q86UE4 MTDH Protein LYRIC yes yes 0 0 0 0 By MS/MS 6 0 1 1 75.125 75.065 3 4.8779E-52 24143 20211116_3445_TMUAki_TMT10x_S_F6 204.18 198.52 668510 1205700 8086.4 1034000 939680 855770 904240 574950 639850 720640 842590 622510 1124400 66758 1064300 900610 876480 910880 603100 669710 697810 806540 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 668510 1205700 8086.4 1034000 939680 855770 904240 574950 639850 720640 842590 622510 1124400 66758 1064300 900610 876480 910880 603100 669710 697810 806540 1 1 1 1 1 1 1 1 1 1 1 405020000 0 405020000 17198 2105 15797 87145 105432 105432 1 SIFYVPDMKPSMFDVSR Oxidation (M) 2033.9591 0.95906975 1578 Q12931;Q12931-2 TRAP1 Heat shock protein 75 kDa, mitochondrial yes no 0 0 1 1 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 70.97 70.838 3 2.8948E-05 22798 20211116_3440_TMUAki_TMT10x_S_F2 86.488 75.373 46370000 74733000 23123 73751000 48261000 54917000 47083000 26876000 22089000 32510000 48139000 43174000 69730000 3447900 75026000 46234000 55783000 46998000 28909000 24490000 31518000 45631000 7 7 2 7 6 6 6 7 7 7 7 25206000 38791000 23123 37362000 24520000 37956000 26824000 14706000 12633000 17498000 24744000 23468000 36191000 1962500 38225000 23561000 38108000 26649000 16209000 13903000 16975000 23494000 4 4 2 4 4 4 4 4 4 4 4 21164000 35942000 0 36388000 23741000 16961000 20259000 12170000 9455300 15011000 23395000 19706000 33540000 1485300 36800000 22673000 17675000 20350000 12700000 10587000 14544000 22137000 3 3 0 3 2 2 2 3 3 3 3 4358700000 2870500000 1488200000 17199 1578 15798 87146;87147;87148 105433;105434;105435;105436;105437;105438;105439 105437 2143;2144 7 SIFYVPDMKPSMFDVSR 2 Oxidation (M) 2049.954 0.95398437 1578 Q12931;Q12931-2 TRAP1 Heat shock protein 75 kDa, mitochondrial yes no 0 0 2 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 62.963 62.942 3 0.023869 18740 20211116_3447_TMUAki_TMT10x_S_F8 46.892 38.803 26469000 44213000 785680 39113000 31526000 59030000 30702000 54621000 45680000 47102000 38374000 24651000 41237000 2974700 40560000 30254000 58808000 31650000 55533000 45557000 46312000 37244000 7 7 6 7 7 7 7 7 7 7 7 17311000 27803000 711190 26269000 18922000 45610000 19984000 33775000 25784000 29187000 22800000 16123000 25937000 2097800 27196000 18211000 45005000 20395000 34800000 25871000 28695000 22087000 4 4 3 4 4 4 4 4 4 4 4 9157500 16410000 74495 12844000 12605000 13420000 10718000 20847000 19896000 17915000 15574000 8527100 15299000 876930 13364000 12043000 13803000 11254000 20733000 19686000 17617000 15158000 3 3 3 3 3 3 3 3 3 3 3 4993200000 2755500000 2237800000 17200 1578 15798 87149;87150;87151;87152 105440;105441;105442 105442 2143;2144 3 SIGEYDVLR Unmodified 1050.5346 0.53457439 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 50.247 50.166 2 0.00084094 16067 20211116_3430_TMUAki_TMT10x_P_F3 110.41 73.314 15096000 22940000 154730 29091000 27199000 27398000 17467000 24880000 25381000 20923000 23581000 14057000 21429000 1534200 29218000 25842000 27959000 18471000 25305000 25411000 20597000 22803000 4 4 3 4 4 4 4 4 4 4 4 7662400 11392000 48188 14207000 20852000 21962000 11765000 12701000 12705000 10385000 11484000 7134500 10640000 833770 14411000 19766000 21687000 12438000 13312000 12841000 10238000 11116000 2 2 1 2 2 2 2 2 2 2 2 7434100 11548000 106540 14884000 6347200 5436300 5701700 12179000 12676000 10538000 12096000 6922700 10788000 700410 14807000 6076200 6272400 6033100 11993000 12570000 10360000 11687000 2 2 2 2 2 2 2 2 2 2 2 1571600000 1016400000 555170000 17201 1433 15799 87153;87154;87155;87156;87157 105443;105444;105445;105446 105443 4 SIGTANRPMGAGEALR Oxidation (M) 1615.81 0.81003775 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 1 1 By MS/MS 4.5 0.5 1 1 2 30.922 30.907 3 1.4873E-10 7038 20211116_3433_TMUAki_TMT10x_P_F5 129.82 106.22 263150 385170 0 508070 879050 650500 335750 313890 308730 280450 398290 244990 359860 25873 511760 828920 646340 368140 335130 318440 275280 381440 1 1 0 1 1 1 1 1 1 1 1 263150 385170 0 508070 879050 650500 335750 313890 308730 280450 398290 244990 359860 25873 511760 828920 646340 368140 335130 318440 275280 381440 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72969000 72969000 0 17202 1576 15800 87158;87159 105447 105447 2134 1 SIGTANRPMGAGEALRR Oxidation (M) 1771.9111 0.91114877 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 1 2 By MS/MS By MS/MS 1.67 0.816 5 2 2 4 5 27.553 27.472 3;4 1.2916E-21 6907 20211116_3429_TMUAki_TMT10x_P_F2 169.06 137.3 2123200 3218600 16115 3652800 3675100 3054800 2312200 2234500 2066800 2021300 3136900 1976700 3004900 170070 3686800 3487900 3130400 2409000 2306900 2151300 1982900 2992900 9 9 3 9 9 9 9 9 9 9 9 839060 1361400 14124 1638200 2364000 2051400 1100300 933510 901920 825150 1280900 781180 1271400 80991 1657900 2234400 2039200 1176000 1002300 939680 810350 1223900 5 5 2 5 5 5 5 5 5 5 5 1284200 1857200 1990.9 2014600 1311100 1003400 1211900 1301000 1164800 1196200 1856000 1195600 1733500 89082 2029000 1253500 1091200 1233000 1304600 1211600 1172600 1769000 4 4 1 4 4 4 4 4 4 4 4 1026600000 750970000 275600000 17203 1576 15801 87160;87161;87162;87163;87164;87165;87166;87167;87168 105448;105449;105450;105451;105452;105453;105454;105455 105450 2134 8 SIGTANRPMGAGEALRR Unmodified 1755.9162 0.91623415 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 2 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 31.042 30.891 3;4 1.4852E-52 7882 20211116_3429_TMUAki_TMT10x_P_F2 258.17 218.74 1952600 3095300 24727 3694200 4222200 2695900 2238200 1324900 1047700 1254300 2451600 1818200 2890500 216710 3711500 4000000 2777200 2337200 1414100 1167800 1227900 2321500 5 5 5 5 5 5 5 5 5 5 5 1197400 1844200 15705 2145600 3433900 2144100 1506300 790320 589680 744710 1400000 1115000 1722000 145230 2167500 3245000 2153900 1600300 870500 668760 729200 1325400 2 2 2 2 2 2 2 2 2 2 2 755170 1251100 9021.4 1548600 788280 551800 731880 534570 458070 509580 1051600 703210 1168500 71480 1544000 754970 623240 736850 543630 499040 498710 996020 3 3 3 3 3 3 3 3 3 3 3 835530000 587280000 248250000 17204 1576 15801 87169;87170;87171;87172;87173;87174 105456;105457;105458;105459;105460 105457 5 SIGTCNRPLGAGEALRR Unmodified 1826.9533 0.95334794 2556 Q96SI9;Q96SI9-2 STRBP Spermatid perinuclear RNA-binding protein yes no 0 0 0 2 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 32.193 32.084 4 3.3178E-15 8335 20211116_3429_TMUAki_TMT10x_P_F2 148.55 122.68 1263500 1931500 4413.7 2408500 2290500 1855900 1357800 1419700 1275200 1257200 1693600 1176400 1804100 114680 2415100 2172500 1914900 1423500 1460600 1315700 1234600 1620800 4 4 2 4 4 4 4 4 4 4 4 671000 1007700 852.2 1244100 1829500 1391900 845400 762300 680770 692200 963040 624770 941220 71560 1254700 1729500 1394700 903890 804730 709790 678930 920280 2 2 1 2 2 2 2 2 2 2 2 592490 923760 3561.5 1164400 460920 463960 512440 657410 594390 565040 730530 551640 862860 43125 1160400 442970 520210 519630 655880 605940 555650 700500 2 2 1 2 2 2 2 2 2 2 2 258420000 141710000 116710000 17205 2556 15802 87175;87176;87177;87178 105461;105462;105463;105464 105462 4 SIGVPIK Acetyl (Protein N-term) 754.45889 0.45889025 1355 P62318;P62318-2 SNRPD3 Small nuclear ribonucleoprotein Sm D3 no no 1 0 0 0 By matching 3 0 1 1 57.489 57.257 2 1 NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 132880000 132880000 0 17206 1355 15803 87179 0 SIGVYDVVELK Unmodified 1220.6653 0.66525421 2202 Q8N684;Q8N684-2;Q8N684-3 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 69.403 69.425 2 4.7493E-14 22617 20211116_3433_TMUAki_TMT10x_P_F5 151.15 85.842 5533400 9627800 242870 9581200 7208300 6498400 6155800 6612100 5900600 6932000 7461000 5154000 8983600 708570 9731600 6899900 6812800 6291200 6726600 6069400 6756900 7149000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5533400 9627800 242870 9581200 7208300 6498400 6155800 6612100 5900600 6932000 7461000 5154000 8983600 708570 9731600 6899900 6812800 6291200 6726600 6069400 6756900 7149000 1 1 1 1 1 1 1 1 1 1 1 532660000 0 532660000 17207 2202 15804 87180;87181 105465;105466 105465 2 SIIGVIPYFPYSK Unmodified 1482.8123 0.8122528 259 O60256;O60256-4;O60256-2;O60256-3 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 4.62 0.857 1 2 4 1 3 5 79.048 79.04 2;3 3.4754E-11 25429 20211116_3444_TMUAki_TMT10x_S_F5 141.1 113.47 16098000 26083000 66626 24575000 20227000 25220000 19586000 16319000 17239000 16855000 19374000 14988000 24333000 1291000 25187000 19371000 25453000 19828000 17058000 17717000 16440000 18624000 4 4 2 4 4 4 4 4 4 4 4 7884900 13374000 12717 12375000 8261400 15879000 9599200 8452000 8528700 8314900 9308100 7341700 12475000 666340 12748000 7955500 15793000 9633800 8964200 8751000 8126400 8955100 2 2 1 2 2 2 2 2 2 2 2 8213400 12710000 53909 12200000 11965000 9341600 9987300 7867200 8710600 8540500 10066000 7646600 11857000 624670 12439000 11416000 9659800 10194000 8093400 8965500 8313400 9668600 2 2 1 2 2 2 2 2 2 2 2 4195900000 1519500000 2676300000 17208 259 15805 87182;87183;87184;87185;87186;87187;87188;87189 105467;105468;105469;105470;105471;105472 105471 6 SIILEGFK Unmodified 905.52222 0.52221879 423 O95347;O95347-2 SMC2 Structural maintenance of chromosomes protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 64.122 64.66 2 0.0019549 21253 20211116_3435_TMUAki_TMT10x_P_F7 116.25 41.141 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17209 423 15806 87190;87191 105473;105474 105473 2 SIIPLPHPVRPEDIE Unmodified 1710.9305 0.93047046 1315 P61599 NAA20 N-alpha-acetyltransferase 20 yes yes 0 0 0 1 By MS/MS By matching 5.67 0.471 1 2 2 1 58.573 58.666 3 0.001397 18218 20211116_3433_TMUAki_TMT10x_P_F5 65.172 44.509 7132600 12046000 76122 11988000 10699000 15815000 9661700 9081200 8612800 9001500 9471300 6641700 11240000 712230 12291000 10237000 15724000 9822000 9570600 8838500 8794600 9110000 2 2 2 2 2 2 2 2 2 2 2 7132600 12046000 76122 11988000 10699000 15815000 9661700 9081200 8612800 9001500 9471300 6641700 11240000 712230 12291000 10237000 15724000 9822000 9570600 8838500 8794600 9110000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1078100000 674590000 403480000 17210 1315 15807 87192;87193;87194 105475;105476 105476 2 SIISMFDRENK Oxidation (M) 1354.6551 0.65510023 322 O75340;O75340-2 PDCD6 Programmed cell death protein 6 yes no 0 0 1 1 By MS/MS 6 0 1 1 46.066 46.229 3 0.034192 12225 20211116_3445_TMUAki_TMT10x_S_F6 53.237 22.365 8463800 13733000 23468 13631000 8786200 8089900 8531000 12093000 13405000 10660000 12628000 7880900 12814000 728100 13830000 8419600 8673200 8817600 12050000 13396000 10470000 12205000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8463800 13733000 23468 13631000 8786200 8089900 8531000 12093000 13405000 10660000 12628000 7880900 12814000 728100 13830000 8419600 8673200 8817600 12050000 13396000 10470000 12205000 2 2 2 2 2 2 2 2 2 2 2 274240000 0 274240000 17211 322 15808 87195 105477;105478 105477 237 2 SILCCLR Unmodified 920.45719 0.45719247 1778 Q15185;Q15185-3;Q15185-4 PTGES3 Prostaglandin E synthase 3 yes no 0 0 0 0 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 47.869 47.718 2 0.0012693 14708 20211116_3429_TMUAki_TMT10x_P_F2 143.09 92.96 20441000 33944000 41580 36702000 47873000 46395000 24539000 40366000 38443000 29408000 36133000 19031000 31683000 1855100 37392000 45302000 46530000 26541000 41018000 38419000 29173000 34928000 6 6 1 6 6 6 6 6 6 6 6 11794000 18424000 41580 20686000 39475000 39233000 18248000 22043000 21583000 16529000 20143000 10981000 17200000 1205200 21220000 37306000 38437000 19722000 23114000 21760000 16370000 19475000 3 3 1 3 3 3 3 3 3 3 3 8646400 15519000 0 16016000 8398700 7162100 6291300 18323000 16860000 12879000 15991000 8050100 14483000 649850 16172000 7996000 8093200 6818900 17904000 16659000 12803000 15452000 3 3 0 3 3 3 3 3 3 3 3 1632600000 1090400000 542140000 17212 1778 15809 87196;87197;87198;87199;87200;87201 105479;105480;105481;105482;105483;105484;105485;105486 105481 8 SILDADPEAQALLEISGHSR Unmodified 2121.0702 0.070211415 2003 Q6P9B6 TLDC1 TLD domain-containing protein 1 yes yes 0 0 0 0 By MS/MS 2 0 1 1 74.617 74.473 3 1.0419E-07 25525 20211116_3429_TMUAki_TMT10x_P_F2 97.621 80.741 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17213 2003 15810 87202 105487 105487 1 SILEIMHK Oxidation (M) 985.52665 0.52665224 86 O00425 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 0 0 1 0 By matching By MS/MS 6.33 0.471 2 1 1 2 40.828 40.924 3 0.0242 10017 20211116_3445_TMUAki_TMT10x_S_F6 55.531 34.66 410140 599370 0 645930 352500 354140 396980 466900 460360 400890 530370 381880 559450 32326 651300 339050 381300 402310 467050 468050 394250 509460 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 410140 599370 0 645930 352500 354140 396980 466900 460360 400890 530370 381880 559450 32326 651300 339050 381300 402310 467050 468050 394250 509460 1 1 0 1 1 1 1 1 1 1 1 192360000 136920000 55441000 17214 86 15811 87203;87204;87205 105488;105489 105488 63 2 SILEYLR Unmodified 892.50182 0.5018177 2188 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 0 0 0 0 By MS/MS 7 0 1 1 63.287 63.958 2 0.0074129 20996 20211116_3435_TMUAki_TMT10x_P_F7 104.21 20.408 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17215 2188 15812 87206 105490 105490 1 SILFVPTSAPR Unmodified 1186.671 0.67100829 672 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.957 2 4 4 2 6 6 58.893 58.682 2;3 1.7722E-18 20628 20211116_3441_TMUAki_TMT10x_S_F3 218.94 171.2 76813000 129300000 1688000 148460000 102270000 116520000 85748000 87846000 85715000 76517000 102890000 71531000 120720000 6840200 149620000 97736000 120030000 87841000 90424000 87811000 75197000 98720000 12 12 6 12 12 12 12 12 12 12 12 41223000 66419000 1141500 78807000 63168000 84483000 52602000 44295000 43826000 41910000 55714000 38390000 62022000 4630500 79606000 60361000 84812000 53637000 46993000 45392000 41030000 53377000 7 7 3 7 7 7 7 7 7 7 7 35589000 62883000 546480 69656000 39104000 32039000 33146000 43551000 41888000 34606000 47174000 33141000 58702000 2209600 70019000 37374000 35218000 34204000 43431000 42419000 34167000 45343000 5 5 3 5 5 5 5 5 5 5 5 10016000000 5679800000 4336400000 17216 672 15813 87207;87208;87209;87210;87211;87212;87213;87214;87215;87216;87217;87218 105491;105492;105493;105494;105495;105496;105497;105498;105499;105500;105501;105502 105500 12 SILGTLTVEQIYQDRDQFAK Unmodified 2324.2012 0.20122559 1700 Q14254 FLOT2 Flotillin-2 yes yes 0 0 0 1 By MS/MS By matching 7 0 2 1 1 76.26 76.355 3 1.893E-71 26275 20211116_3435_TMUAki_TMT10x_P_F7 284.88 258.4 4095100 6651700 81940 6018700 3488900 7059600 4268200 3744100 3851100 4395800 4836600 3813500 6204300 407380 6200300 3369900 7053100 4275700 3993500 3971000 4266300 4635200 1 1 1 1 1 1 1 1 1 1 1 4095100 6651700 81940 6018700 3488900 7059600 4268200 3744100 3851100 4395800 4836600 3813500 6204300 407380 6200300 3369900 7053100 4275700 3993500 3971000 4266300 4635200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1285800000 589830000 695980000 17217 1700 15814 87219;87220 105503 105503 1 SILKIDDVVNTR Unmodified 1371.7722 0.7721789 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 1 By MS/MS By MS/MS 7 1 2 2 2 2 53.143 53.151 3 0.00030691 15098 20211116_3445_TMUAki_TMT10x_S_F6 83.823 55.856 5550100 10117000 0 8104900 9910900 12394000 6766400 13302000 11178000 10050000 9028700 5167500 9433100 490220 8474600 9421900 12382000 7164400 13382000 11103000 9949300 8776200 2 2 0 2 2 2 2 2 2 2 2 3073700 5126200 0 4316700 5949500 8946600 4217900 7127200 6212900 5283700 4496000 2861800 4780300 273100 4530200 5659700 8787700 4430700 7283100 6172400 5236300 4390300 1 1 0 1 1 1 1 1 1 1 1 2476400 4991200 0 3788200 3961300 3447500 2548500 6175200 4965400 4766200 4532700 2305700 4652800 217110 3944500 3762200 3594400 2733700 6098700 4930300 4713000 4385900 1 1 0 1 1 1 1 1 1 1 1 748010000 368640000 379370000 17218 1147 15815 87221;87222;87223;87224 105504;105505;105506;105507 105506 4 SILLATDVASR Unmodified 1144.6452 0.64518747 2779 Q9H0S4;Q9H0S4-2 DDX47 Probable ATP-dependent RNA helicase DDX47 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 53.133 53.493 2 3.862E-11 15186 20211116_3445_TMUAki_TMT10x_S_F6 171.34 133.02 31685000 50912000 290900 61547000 45064000 42783000 36459000 31178000 30555000 29264000 39455000 29504000 47546000 3082600 61756000 43011000 44481000 37249000 32228000 31658000 28660000 37786000 6 6 5 6 6 6 6 6 6 6 6 17642000 27598000 100670 34260000 30560000 30646000 24046000 15996000 15350000 15163000 20832000 16428000 25777000 1734600 34427000 29145000 31113000 24462000 16978000 16191000 14843000 19926000 3 3 2 3 3 3 3 3 3 3 3 14043000 23314000 190240 27286000 14504000 12137000 12413000 15181000 15205000 14102000 18624000 13076000 21769000 1348000 27329000 13866000 13367000 12787000 15250000 15467000 13817000 17860000 3 3 3 3 3 3 3 3 3 3 3 1614700000 776520000 838220000 17219 2779 15816 87225;87226;87227;87228 105508;105509;105510;105511;105512;105513 105511 6 SILPTAPR Unmodified 853.50215 0.50215205 788 P23588;P23588-2 EIF4B Eukaryotic translation initiation factor 4B yes no 0 0 0 0 By MS/MS By MS/MS 5.5 2.69 2 2 2 2 4 4 39.666 39.873 2 0.00041809 9345 20211116_3447_TMUAki_TMT10x_S_F8 143.61 74.178 20925000 31718000 163170 33473000 36378000 37266000 22374000 28035000 28048000 26435000 28768000 19483000 29603000 1946400 34080000 34528000 37523000 23603000 28922000 28312000 25884000 27729000 14 14 7 14 14 14 14 14 14 14 14 15280000 22611000 112190 23759000 31346000 32524000 17382000 20753000 20853000 20208000 21172000 14227000 21103000 1461400 24288000 29703000 32328000 18469000 21678000 21074000 19759000 20414000 7 7 2 7 7 7 7 7 7 7 7 5644600 9106700 50982 9713800 5031500 4742300 4991500 7282200 7195700 6226700 7595600 5255900 8499800 485000 9792500 4825100 5194800 5133400 7244200 7238100 6124800 7314800 7 7 5 7 7 7 7 7 7 7 7 1397400000 893790000 503580000 17220 788 15817 87229;87230;87231;87232;87233;87234;87235;87236 105514;105515;105516;105517;105518;105519;105520;105521;105522;105523;105524;105525;105526;105527;105528 105527 15 SILREPTFR Unmodified 1117.6244 0.62439245 3181 Q9UMN6;Q03164;Q03164-2;Q03164-3 KMT2B;KMT2A Histone-lysine N-methyltransferase 2B;Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 39.416 39.347 3 0.0001635 9730 20211116_3428_TMUAki_TMT10x_P_F1 91.095 62.989 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17221 3181 15818 87237;87238 105529;105530 105529 2 SILSISDEAAR Unmodified 1160.6037 0.60371659 1105 P49589-3 CARS Cysteine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 By MS/MS 4 0 1 1 49.294 49.451 2 0.00035209 14135 20211116_3431_TMUAki_TMT10x_P_F4 93.448 69.113 3364000 5574600 65073 6301000 8818900 10295000 5729600 5430600 5877200 5041500 5346400 3132700 5204400 415940 6436500 8382200 10132000 5977900 5755300 5953800 4939800 5173900 1 1 1 1 1 1 1 1 1 1 1 3364000 5574600 65073 6301000 8818900 10295000 5729600 5430600 5877200 5041500 5346400 3132700 5204400 415940 6436500 8382200 10132000 5977900 5755300 5953800 4939800 5173900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 61275000 61275000 0 17222 1105 15819 87239 105531 105531 1 SILSKYDEELEGERPHSFR Unmodified 2291.1182 0.11822424 207 O43290 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 0 0 0 2 By MS/MS 5 0 1 1 49.562 49.746 5 1.2089E-24 13389 20211116_3444_TMUAki_TMT10x_S_F5 178.43 163.96 2567900 4412000 1322.4 4710100 2931900 2462000 2313700 3977000 3700700 3583900 3743600 2390900 4118000 215000 4750400 2795500 2680800 2422100 3955300 3705600 3516400 3610000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2567900 4412000 1322.4 4710100 2931900 2462000 2313700 3977000 3700700 3583900 3743600 2390900 4118000 215000 4750400 2795500 2680800 2422100 3955300 3705600 3516400 3610000 2 2 1 2 2 2 2 2 2 2 2 399790000 0 399790000 17223 207 15820 87240 105532;105533 105532 2 SILSSASATVATVGQGISNVIEK Unmodified 2231.2009 0.20089124 2938 Q9NRY5 FAM114A2 Protein FAM114A2 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 79.914 79.852 3 5.3865E-18 28171 20211116_3430_TMUAki_TMT10x_P_F3 128.01 117.4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17224 2938 15821 87241;87242 105534;105535 105534 2 SILTISR Unmodified 788.4756 0.47560295 1254 P56192 MARS Methionine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 By MS/MS By MS/MS 4 3.29 2 1 2 2 3 42.921 42.897 2 0.002405 11154 20211116_3428_TMUAki_TMT10x_P_F1 126.28 39.806 5947900 9067500 0 9781400 9464300 7901200 6750400 6272500 6306900 5706500 7860600 5537200 8463700 436550 9900100 8999700 8128600 6975400 6442700 6490800 5596600 7534700 4 4 0 4 4 4 4 4 4 4 4 2826000 4232800 0 4560300 6740700 5751300 3694200 3044900 3103000 2800100 3839800 2630900 3950900 240120 4646900 6383500 5724800 3888200 3225100 3208800 2744800 3681300 2 2 0 2 2 2 2 2 2 2 2 3121800 4834800 0 5221100 2723600 2149900 3056100 3227600 3203900 2906400 4020800 2906300 4512800 196440 5253200 2616200 2403900 3087100 3217600 3282000 2851800 3853400 2 2 0 2 2 2 2 2 2 2 2 352130000 195200000 156930000 17225 1254 15822 87243;87244;87245;87246;87247 105536;105537;105538;105539;105540 105536 5 SILTLSHEPK Unmodified 1123.6237 0.62372375 2092 Q7Z6Z7;Q7Z6Z7-2;Q7Z6Z7-3 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 41.327 41.711 3 0.00022643 12279 20211116_3446_TMUAki_TMT10x_S_F7 102.52 60.129 253070 388780 421.57 426550 227120 193020 241180 267990 264840 241170 340870 235640 362910 21011 428990 218150 212730 244630 267890 271090 236640 326470 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 253070 388780 421.57 426550 227120 193020 241180 267990 264840 241170 340870 235640 362910 21011 428990 218150 212730 244630 267890 271090 236640 326470 1 1 1 1 1 1 1 1 1 1 1 89121000 0 89121000 17226 2092 15823 87248;87249 105541 105541 1 SILVSPTGPSR Unmodified 1112.619 0.61897272 1724 Q14684;Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 0 0 By MS/MS By MS/MS 5 3.29 2 1 2 2 3 41.397 41.538 2 1.2721E-17 10108 20211116_3447_TMUAki_TMT10x_S_F8 196.52 151.8 2666000 4146600 9089.7 5566700 5988900 4630700 3389200 3400400 3640500 2952200 3996700 2482400 3874500 276040 5564700 5677600 4747600 3581500 3506000 3705300 2901700 3844400 3 3 3 3 3 3 3 3 3 3 3 1605800 2334800 1713.3 3414000 4989500 3805300 2547200 1886700 1962200 1613400 2221600 1495200 2182600 182120 3412500 4722900 3809300 2693300 2006900 2031000 1587000 2135100 1 1 1 1 1 1 1 1 1 1 1 1060200 1811800 7376.4 2152700 999370 825410 841980 1513700 1678300 1338800 1775100 987180 1691900 93919 2152200 954740 938220 888170 1499100 1674200 1314700 1709400 2 2 2 2 2 2 2 2 2 2 2 234960000 130070000 104890000 17227 1724 15824 87250;87251;87252;87253;87254 105542;105543;105544;105545;105546 105546 5 SINAGGHK Unmodified 782.4035 0.40350064 1034 P45880;P45880-2;P45880-1 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 0 By MS/MS 5 0 1 1 26.093 26.018 3 0.010034 5056 20211116_3433_TMUAki_TMT10x_P_F5 65.224 30.417 51030 70282 759.25 54728 37761 71207 39552 72465 38857 54950 43260 47520 65523 4752.5 57177 36298 71553 40004 73090 39717 54389 41595 1 1 1 1 1 1 1 1 1 1 1 51030 70282 759.25 54728 37761 71207 39552 72465 38857 54950 43260 47520 65523 4752.5 57177 36298 71553 40004 73090 39717 54389 41595 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1891300 1891300 0 17228 1034 15825 87255 105547 105547 1 SINDNIAIFTEVQK Unmodified 1590.8253 0.82533668 1536 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 0 By MS/MS By MS/MS 6 1 1 1 1 1 71.289 71.442 3 0.0009252 24672 20211116_3446_TMUAki_TMT10x_S_F7 71.98 57.008 8710400 14443000 77957 14189000 10104000 12257000 9780400 6909900 6382000 7589600 10289000 8110800 13476000 814320 14464000 9684400 12486000 9832400 7315800 6780000 7384400 9804700 2 2 2 2 2 2 2 2 2 2 2 4201700 7122100 34018 7348300 4744600 7381400 4846800 3620600 3245400 4097100 5498400 3912500 6646500 387660 7481000 4554000 7433100 4861400 3885200 3451700 3981800 5234300 1 1 1 1 1 1 1 1 1 1 1 4508700 7321400 43938 6840500 5359000 4876000 4933600 3289300 3136600 3492600 4790900 4198300 6829800 426660 6983000 5130500 5052900 4971000 3430500 3328300 3402700 4570400 1 1 1 1 1 1 1 1 1 1 1 764870000 418740000 346130000 17229 1536 15826 87256;87257 105548;105549 105549 2 SINDNIAIFTEVQKR Unmodified 1746.9264 0.92644771 1536 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0.707 1 2 1 2 2 60.778 61.192 3 3.7774E-30 19845 20211116_3435_TMUAki_TMT10x_P_F7 211.7 185.15 11169000 20943000 163630 16578000 21541000 36483000 19691000 37722000 28666000 29028000 23926000 10400000 19525000 1136100 17518000 20612000 35966000 20348000 38030000 28602000 28708000 23227000 3 3 2 3 3 3 3 3 3 3 3 7594900 13788000 64778 11438000 13347000 28276000 14521000 22998000 17711000 17884000 15031000 7071400 12856000 682990 12086000 12826000 27649000 14767000 23496000 17783000 17677000 14583000 2 2 1 2 2 2 2 2 2 2 2 3573600 7155000 98849 5140200 8193300 8206700 5169900 14723000 10955000 11144000 8894800 3328100 6668800 453100 5432000 7786100 8317800 5581200 14533000 10819000 11032000 8644200 1 1 1 1 1 1 1 1 1 1 1 2151600000 1235700000 915940000 17230 1536 15827 87258;87259;87260;87261 105550;105551;105552;105553 105550 4 SINDPEHPLTLEELNVVEQVR Unmodified 2430.2391 0.23906766 3276 Q9Y3D0 FAM96B Mitotic spindle-associated MMXD complex subunit MIP18 yes yes 0 0 0 0 By MS/MS 1 0 1 1 68.303 68.303 3 3.9417E-10 21553 20211116_3428_TMUAki_TMT10x_P_F1 103.92 85.78 3797100 6365900 0 5439100 3891100 7913900 4698200 5200900 4525700 4351000 5132600 3535200 5936600 108400 5651200 3748300 7848500 4718000 5399400 4633200 4284400 4932400 2 2 0 2 2 2 2 2 2 2 2 3797100 6365900 0 5439100 3891100 7913900 4698200 5200900 4525700 4351000 5132600 3535200 5936600 108400 5651200 3748300 7848500 4718000 5399400 4633200 4284400 4932400 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 471840000 471840000 0 17231 3276 15828 87262 105554;105555 105555 2 SINGILFPGGSVDLR Unmodified 1543.8358 0.83584179 2367 Q92820 GGH Gamma-glutamyl hydrolase yes yes 0 0 0 0 By MS/MS 3 2.83 2 1 3 74.775 74.76 2 5.8879E-06 26084 20211116_3439_TMUAki_TMT10x_S_F1 89.629 55.423 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17232 2367 15829 87263;87264;87265 105556;105557;105558 105556 3 SINPDEAVAYGAAVQAAILMGDK Oxidation (M) 2319.1417 0.1416618 596 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B no no 0 0 1 0 By MS/MS By MS/MS 7 1 2 2 1 3 79.967 79.955 3 3.9547E-08 26103 20211116_3445_TMUAki_TMT10x_S_F6 99.135 87.179 17573000 29721000 312480 29868000 20009000 22259000 23669000 12895000 12834000 15860000 21226000 16365000 27733000 1782300 30346000 19296000 22934000 23482000 13672000 13828000 15368000 20217000 5 5 5 5 5 5 5 5 5 5 5 4945300 8740900 155820 8545900 4691300 9316300 5552500 4465700 4700000 4923900 6297400 4605700 8155500 551660 8743600 4529400 9334300 5560700 4798900 4875400 4790100 6025400 2 2 2 2 2 2 2 2 2 2 2 12628000 20980000 156660 21322000 15317000 12942000 18117000 8429100 8133900 10936000 14929000 11759000 19578000 1230600 21603000 14767000 13600000 17921000 8872900 8952900 10578000 14191000 3 3 3 3 3 3 3 3 3 3 3 3175600000 1020400000 2155200000 17233 596 15830 87266;87267;87268;87269 105559;105560;105561;105562;105563;105564 105561 574 6 SINPDEAVAYGAAVQAAILMGDK Unmodified 2303.1467 0.14674718 596 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B no no 0 0 0 0 By MS/MS By MS/MS 7 0.707 1 2 1 2 2 81.015 81.043 3 3.237E-28 28679 20211116_3446_TMUAki_TMT10x_S_F7 173.47 150.03 6142500 8968000 0 11099000 6763200 4925400 9635000 1881000 1382800 2608200 5797000 5718600 8376100 436580 11080000 6551800 5330100 9367600 2087900 1924500 2517300 5455500 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6142500 8968000 0 11099000 6763200 4925400 9635000 1881000 1382800 2608200 5797000 5718600 8376100 436580 11080000 6551800 5330100 9367600 2087900 1924500 2517300 5455500 2 2 0 2 2 2 2 2 2 2 2 2101000000 699820000 1401200000 17234 596 15830 87270;87271;87272;87273 105565;105566;105567;105568 105567 4 SINPDEAVAYGAAVQAAILSGDK Unmodified 2259.1383 0.13829098 615 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 By MS/MS By MS/MS 6.14 2.24 4 1 1 4 6 7 14 23 14 72.653 72.655 2;3;4 8.0824E-69 28305 20211116_3446_TMUAki_TMT10x_S_F7 240.21 218.91 171330000 252900000 605100 304030000 145970000 176970000 190130000 84089000 98828000 114430000 167200000 159510000 236170000 12202000 304650000 140970000 186030000 187720000 91091000 106960000 110510000 159180000 39 39 23 39 39 39 39 39 39 39 39 83794000 119160000 217910 142070000 61340000 96831000 68777000 43852000 52292000 59142000 80126000 78014000 111270000 5725100 142640000 58944000 100240000 68864000 47717000 54907000 57131000 76433000 26 26 16 26 26 26 26 26 26 26 26 87538000 133740000 387190 161960000 84633000 80137000 121360000 40236000 46537000 55288000 87079000 81501000 124900000 6477200 162010000 82025000 85789000 118860000 43374000 52056000 53377000 82747000 13 13 7 13 13 13 13 13 13 13 13 49662000000 26342000000 23320000000 17235 615 15831 87274;87275;87276;87277;87278;87279;87280;87281;87282;87283;87284;87285;87286;87287;87288;87289;87290;87291;87292;87293;87294;87295;87296;87297;87298;87299;87300;87301;87302;87303;87304;87305;87306;87307;87308;87309;87310 105569;105570;105571;105572;105573;105574;105575;105576;105577;105578;105579;105580;105581;105582;105583;105584;105585;105586;105587;105588;105589;105590;105591;105592;105593;105594;105595;105596;105597;105598;105599;105600;105601;105602;105603;105604;105605;105606;105607;105608;105609;105610;105611;105612;105613 105610 45 SINPLGGFVHYGEVTNDFVMLK Oxidation (M) 2452.2097 0.20968178 975 P39023 RPL3 60S ribosomal protein L3 yes yes 0 0 1 0 By MS/MS By MS/MS 7.8 0.4 1 4 3 2 77.867 77.864 3;4 1.4217E-08 24949 20211116_3447_TMUAki_TMT10x_S_F8 101.29 84.979 31445000 59125000 386160 45977000 34283000 59340000 38843000 37494000 37317000 42887000 41188000 29280000 55121000 2862500 48032000 33001000 59136000 39115000 39385000 38168000 41664000 39613000 7 7 4 7 7 7 7 7 7 7 7 19287000 35703000 302300 27227000 17824000 42257000 21932000 22567000 22520000 25626000 24047000 17960000 33283000 1814200 28599000 17209000 41679000 22050000 24030000 22939000 24902000 23150000 4 4 2 4 4 4 4 4 4 4 4 12158000 23422000 83858 18750000 16459000 17082000 16911000 14927000 14797000 17261000 17141000 11320000 21838000 1048200 19433000 15792000 17457000 17064000 15355000 15229000 16762000 16463000 3 3 2 3 3 3 3 3 3 3 3 9469900000 5081500000 4388400000 17236 975 15832 87311;87312;87313;87314;87315 105614;105615;105616;105617;105618;105619;105620 105620 1251 7 SINQPVAFVR Unmodified 1129.6244 0.62439245 2759 Q9GZT3;Q9GZT3-2 SLIRP SRA stem-loop-interacting RNA-binding protein, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.2 3.43 2 3 2 3 46.27 46.226 2 2.5194E-11 12624 20211116_3436_TMUAki_TMT10x_P_F8 213.98 163.85 11528000 18165000 21618 21051000 16199000 15302000 10217000 7777200 7927400 6630400 13175000 10733000 16961000 912180 21186000 15375000 15774000 10605000 8252700 8351200 6522800 12547000 5 5 2 5 5 5 5 5 5 5 5 8557200 13510000 13357 15631000 13822000 12945000 8434200 5555600 5659900 4538800 9713100 7966700 12614000 668620 15756000 13111000 13187000 8751000 5991000 6023200 4474700 9244400 3 3 1 3 3 3 3 3 3 3 3 2970700 4654700 8260.4 5420300 2376900 2356700 1782500 2221600 2267500 2091600 3461900 2766100 4346200 243560 5429700 2264500 2586800 1854200 2261700 2327900 2048100 3302600 2 2 1 2 2 2 2 2 2 2 2 726160000 504220000 221950000 17237 2759 15833 87316;87317;87318;87319;87320 105621;105622;105623;105624;105625 105623 5 SINQQSGAHVELQR Unmodified 1565.791 0.79101686 2494 Q96I24 FUBP3 Far upstream element-binding protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 5.75 1.3 1 1 2 3 1 30.792 30.926 3 5.1746E-30 6711 20211116_3431_TMUAki_TMT10x_P_F4 212.43 185.28 390300 567790 905.91 613450 723490 711040 410230 370750 425330 346890 470320 363410 529980 34712 624060 685880 710700 432960 393410 433640 339780 452310 4 4 1 4 4 4 4 4 4 4 4 355930 501840 905.91 552290 691650 678630 373500 326000 386490 317880 432940 331410 468460 34712 561750 655220 675630 395900 349010 394270 310790 416200 2 2 1 2 2 2 2 2 2 2 2 34373 65948 0 61162 31850 32410 36724 44753 38845 29019 37380 32005 61519 0 62303 30661 35068 37061 44408 39373 28990 36104 2 2 0 2 2 2 2 2 2 2 2 67629000 66886000 743590 17238 2494 15834 87321;87322;87323;87324 105626;105627;105628;105629;105630 105626 5 SIPAYLAETLYYAMK Oxidation (M) 1748.8695 0.86950968 564 P08758 ANXA5 Annexin A5 yes yes 0 0 1 0 By MS/MS 2 0 1 1 79.81 79.793 3 0.0068447 27685 20211116_3429_TMUAki_TMT10x_P_F2 56.648 42.969 2613100 4069700 0 3431200 2494200 4071600 2896600 1566600 1887300 1993200 2622900 2432000 3795100 91178 3555100 2393600 4052100 2885900 1732000 1990300 1929100 2507500 1 1 0 1 1 1 1 1 1 1 1 2613100 4069700 0 3431200 2494200 4071600 2896600 1566600 1887300 1993200 2622900 2432000 3795100 91178 3555100 2393600 4052100 2885900 1732000 1990300 1929100 2507500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 747720000 747720000 0 17239 564 15835 87325 105631 105631 531 1 SIPDGSEKGDFIALDLGGSSFR Unmodified 2267.107 0.10699085 730 P19367;P19367-4;P19367-2;P19367-3 HK1 Hexokinase-1 yes no 0 0 0 1 By MS/MS 5.5 0.5 1 1 2 73.157 73.073 3 1.352E-10 23279 20211116_3445_TMUAki_TMT10x_S_F6 113.9 100.3 6274700 10970000 32652 9513400 9430400 7656900 8400900 7857500 7113000 8280600 8676500 5842700 10231000 594850 9780400 9018400 7919300 8535300 7991500 7348100 8069900 8321500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6274700 10970000 32652 9513400 9430400 7656900 8400900 7857500 7113000 8280600 8676500 5842700 10231000 594850 9780400 9018400 7919300 8535300 7991500 7348100 8069900 8321500 2 2 2 2 2 2 2 2 2 2 2 542240000 0 542240000 17240 730 15836 87326;87327 105632;105633;105634 105634 3 SIPICTLK Unmodified 930.52084 0.52083858 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By MS/MS 1 0 1 1 52.828 52.539 2 0.013777 17122 20211116_3439_TMUAki_TMT10x_S_F1 75.825 21.276 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17241 769 15837 87328 105635 105635 1 SIPLAMAPVFEQK Oxidation (M) 1445.7588 0.75883702 3077 Q9UBF2;Q9UBF2-2 COPG2 Coatomer subunit gamma-2 yes no 0 0 1 0 By MS/MS 7 0 1 1 63.41 64.082 3 0.00047531 21046 20211116_3435_TMUAki_TMT10x_P_F7 74.987 47.559 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17242 3077 15838 87329 105636 105636 3126 1 SIPLAMAPVFEQK Unmodified 1429.7639 0.7639224 3077 Q9UBF2;Q9UBF2-2 COPG2 Coatomer subunit gamma-2 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 75.316 75.21 3 3.854E-06 24441 20211116_3436_TMUAki_TMT10x_P_F8 100.22 78.972 2407600 4040900 3357.2 3720300 3137000 2697000 2894300 2438800 1995900 2337100 2969800 2241800 3769400 212950 3802700 3002000 2804900 2920600 2489600 2104400 2286700 2834700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2407600 4040900 3357.2 3720300 3137000 2697000 2894300 2438800 1995900 2337100 2969800 2241800 3769400 212950 3802700 3002000 2804900 2920600 2489600 2104400 2286700 2834700 1 1 1 1 1 1 1 1 1 1 1 255230000 0 255230000 17243 3077 15838 87330;87331 105637;105638 105637 2 SIPLDEGEDEAQR Unmodified 1457.6634 0.66341631 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS 1 0 1 1 40.446 40.308 2 4.8967E-26 12138 20211116_3439_TMUAki_TMT10x_S_F1 236.42 196.79 113310 218600 0 319680 116110 76491 116570 221590 309840 137790 249360 105480 204360 5893.3 315350 111110 96185 124200 215460 304610 138020 242420 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 113310 218600 0 319680 116110 76491 116570 221590 309840 137790 249360 105480 204360 5893.3 315350 111110 96185 124200 215460 304610 138020 242420 1 1 0 1 1 1 1 1 1 1 1 14144000 0 14144000 17244 1695 15839 87332 105639 105639 1 SIPLDEGEDEAQRR Unmodified 1613.7645 0.76452734 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 34.768 34.768 3 1.5178E-26 9820 20211116_3439_TMUAki_TMT10x_S_F1 198.23 154.85 482440 787490 14028 1098200 1926300 1308300 750350 713590 843200 492550 769850 449310 735970 73294 1101500 1818300 1306500 825470 748930 851150 490160 744920 1 1 1 1 1 1 1 1 1 1 1 482440 787490 14028 1098200 1926300 1308300 750350 713590 843200 492550 769850 449310 735970 73294 1101500 1818300 1306500 825470 748930 851150 490160 744920 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 99837000 99837000 0 17245 1695 15840 87333;87334 105640;105641 105641 2 SIPPGLVNGLALQLR Unmodified 1546.9195 0.91951184 1250 P55957;P55957-2;P55957-4 BID BH3-interacting domain death agonist;BH3-interacting domain death agonist p15;BH3-interacting domain death agonist p13;BH3-interacting domain death agonist p11 yes no 0 0 0 0 By MS/MS 4 0 1 1 76.89 76.822 2 0.00059254 25849 20211116_3442_TMUAki_TMT10x_S_F4 80.037 34.956 3634900 6160000 97567 6185000 4480600 4097600 4159300 3990600 4069800 4322700 4571500 3385200 5748000 404130 6276800 4294000 4300700 4233000 4072700 4162100 4208100 4394400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3634900 6160000 97567 6185000 4480600 4097600 4159300 3990600 4069800 4322700 4571500 3385200 5748000 404130 6276800 4294000 4300700 4233000 4072700 4162100 4208100 4394400 1 1 1 1 1 1 1 1 1 1 1 351030000 0 351030000 17246 1250 15841 87335 105642 105642 1 SIPSLVDGFKPGQR Unmodified 1499.8096 0.80962704 1500 Q02880;Q02880-2 TOP2B DNA topoisomerase 2-beta yes no 0 0 0 1 By MS/MS By MS/MS 1.86 0.833 3 2 2 4 3 57.928 57.707 3 1.6995E-20 18664 20211116_3429_TMUAki_TMT10x_P_F2 179.5 152.79 30805000 51020000 193660 56120000 42504000 50560000 34875000 43977000 43496000 41025000 43075000 28684000 47626000 2800800 56809000 40568000 51703000 36041000 44956000 43858000 40189000 41566000 6 6 4 6 6 6 6 6 6 6 6 15517000 24701000 15268 27118000 26086000 36257000 21497000 21677000 21988000 20009000 20949000 14448000 23058000 1351200 27631000 24892000 36045000 22061000 22726000 22311000 19611000 20241000 3 3 1 3 3 3 3 3 3 3 3 15288000 26318000 178390 29002000 16417000 14303000 13378000 22299000 21508000 21016000 22125000 14236000 24568000 1449600 29178000 15676000 15657000 13980000 22231000 21547000 20578000 21324000 3 3 3 3 3 3 3 3 3 3 3 3312000000 1843600000 1468400000 17247 1500 15842 87336;87337;87338;87339;87340;87341;87342 105643;105644;105645;105646;105647;105648;105649;105650;105651 105645 9 SIPSMVDGLKPGQR Unmodified 1483.7817 0.78169773 625 P11388;P11388-2;P11388-3;P11388-4 TOP2A DNA topoisomerase 2-alpha yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 51.827 51.614 3 0.0001855 16244 20211116_3429_TMUAki_TMT10x_P_F2 83.856 57.738 9793400 15181000 40829 18764000 17144000 13419000 10223000 11344000 9077600 9459300 13444000 9118900 14179000 952930 18809000 16267000 13954000 10696000 11582000 9440000 9316100 12834000 2 2 2 2 2 2 2 2 2 2 2 5215800 8030400 24048 9947700 11411000 10508000 7006200 5881200 4842900 5258000 7288300 4856600 7500400 541610 10021000 10833000 10566000 7270100 6194400 5108200 5160900 6955100 1 1 1 1 1 1 1 1 1 1 1 4577500 7151000 16781 8815800 5732200 2911700 3217100 5462400 4234700 4201300 6155600 4262300 6678800 411320 8787700 5434100 3387800 3426200 5387300 4331700 4155200 5878600 1 1 1 1 1 1 1 1 1 1 1 443150000 284100000 159050000 17248 625 15843 87343;87344 105652;105653 105652 2 SIPSMVDGLKPGQR Oxidation (M) 1499.7766 0.77661235 625 P11388;P11388-2;P11388-3;P11388-4 TOP2A DNA topoisomerase 2-alpha yes no 0 0 1 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 40.894 41.161 3 3.6136E-06 9909 20211116_3447_TMUAki_TMT10x_S_F8 107.93 85.695 4200000 6686800 119530 9067900 14206000 12116000 6257500 7826100 9348500 6790400 7292700 3911400 6248400 587120 9128100 13428000 12059000 6858500 8142500 9302300 6674600 7098700 4 4 3 4 4 4 4 4 4 4 4 3548000 5590900 113830 7637600 13670000 11583000 5775000 6398600 7758200 5750700 6133100 3304300 5224600 529390 7706100 12915000 11440000 6332100 6747900 7748200 5643100 5966600 3 3 2 3 3 3 3 3 3 3 3 651960 1095900 5699.9 1430200 535950 533500 482490 1427500 1590200 1039800 1159600 607080 1023800 57740 1422000 512890 618900 526500 1394700 1554000 1031500 1132000 1 1 1 1 1 1 1 1 1 1 1 1092100000 645980000 446110000 17249 625 15843 87345;87346;87347 105654;105655;105656;105657 105657 645 4 SIQADGLVWGSSK Unmodified 1346.683 0.68302954 792 P24534 EEF1B2 Elongation factor 1-beta yes yes 0 0 0 0 By MS/MS By MS/MS 6.56 0.497 4 5 4 5 59.696 60.042 2;3 6.1357E-44 19873 20211116_3446_TMUAki_TMT10x_S_F7 287.76 218.56 71455000 114170000 659570 139410000 91943000 78374000 79496000 42289000 40266000 50366000 85798000 66535000 106630000 6666100 139520000 87875000 82796000 80072000 45060000 44296000 48857000 81356000 10 10 8 10 10 10 10 10 10 10 10 28952000 44839000 133150 53570000 56755000 50933000 44850000 16259000 15936000 18488000 32686000 26957000 41873000 2754200 53995000 54118000 51271000 45220000 18348000 18072000 17965000 31012000 4 4 2 4 4 4 4 4 4 4 4 42503000 69333000 526420 85836000 35188000 27441000 34646000 26030000 24330000 31878000 53112000 39579000 64757000 3912000 85528000 33758000 31525000 34852000 26712000 26225000 30893000 50344000 6 6 6 6 6 6 6 6 6 6 6 10987000000 5959300000 5027900000 17250 792 15844 87348;87349;87350;87351;87352;87353;87354;87355;87356 105658;105659;105660;105661;105662;105663;105664;105665;105666;105667 105665 10 SIQEAPAVSEDLVIR Unmodified 1625.8625 0.86245047 1921 Q5JTV8-3;Q5JTV8-2 TOR1AIP1 Torsin-1A-interacting protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 58.589 58.343 3 0.0097625 20538 20211116_3441_TMUAki_TMT10x_S_F3 56.817 35.058 3865400 6366000 2934 5408600 4633200 7921300 4779600 5116500 4565000 4872300 4869100 3599100 5936500 333960 5622900 4446400 7851700 4833800 5336300 4664300 4768600 4687600 1 1 1 1 1 1 1 1 1 1 1 3865400 6366000 2934 5408600 4633200 7921300 4779600 5116500 4565000 4872300 4869100 3599100 5936500 333960 5622900 4446400 7851700 4833800 5336300 4664300 4768600 4687600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 216100000 216100000 0 17251 1921 15845 87357;87358 105668;105669 105669 2 SIQEIQELDKDDESLR Unmodified 1916.9327 0.93271488 1179 P52565;P52565-2 ARHGDIA Rho GDP-dissociation inhibitor 1 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 55.01 54.864 3 1.3065E-52 17511 20211116_3429_TMUAki_TMT10x_P_F2 265.27 228.67 56429000 109980000 275750 81489000 96384000 150060000 76921000 173760000 155340000 138540000 113530000 52540000 102520000 5101900 86170000 91919000 149170000 81470000 174420000 153110000 136760000 110810000 13 13 7 13 13 13 13 13 13 13 13 25395000 46772000 194710 35045000 63076000 106760000 53823000 74475000 69140000 61212000 46528000 23644000 43599000 2516000 37652000 60240000 103610000 55553000 76953000 68866000 60329000 45584000 5 5 3 5 5 5 5 5 5 5 5 31034000 63210000 81035 46444000 33308000 43297000 23099000 99290000 86195000 77331000 67002000 28896000 58919000 2585900 48517000 31679000 45561000 25917000 97468000 84247000 76430000 65228000 8 8 4 8 8 8 8 8 8 8 8 14285000000 9103100000 5182000000 17252 1179 15846 87359;87360;87361;87362;87363;87364;87365;87366 105670;105671;105672;105673;105674;105675;105676;105677;105678;105679;105680;105681;105682 105671 13 SIQEIQELDKDDESLRK Unmodified 2045.0277 0.027677899 1179 P52565;P52565-2 ARHGDIA Rho GDP-dissociation inhibitor 1 yes no 0 0 0 2 By MS/MS By MS/MS 3.75 1.42 3 3 2 2 2 6 6 51.601 51.546 4;5 3.3663E-53 14911 20211116_3431_TMUAki_TMT10x_P_F4 272.76 232.27 183720000 298430000 1531900 418010000 274790000 258680000 164060000 238540000 267310000 218200000 272110000 171060000 278910000 16587000 415610000 260700000 272900000 175400000 242940000 267600000 213940000 262350000 15 15 11 15 15 15 15 15 15 15 15 79476000 120310000 540190 180140000 215550000 194490000 118250000 100450000 115090000 92575000 112350000 73998000 112490000 8312500 179760000 204220000 195140000 124930000 106640000 117130000 90738000 108460000 5 5 2 5 5 5 5 5 5 5 5 104240000 178120000 991740 237870000 59238000 64189000 45817000 138090000 152220000 125620000 159770000 97062000 166420000 8274700 235850000 56480000 77765000 50469000 136300000 150470000 123200000 153890000 10 10 9 10 10 10 10 10 10 10 10 39566000000 22480000000 17086000000 17253 1179 15847 87367;87368;87369;87370;87371;87372;87373;87374;87375;87376;87377;87378 105683;105684;105685;105686;105687;105688;105689;105690;105691;105692;105693;105694;105695;105696;105697 105685 15 SIQETLGESGSLLPNK Unmodified 1671.8679 0.86792978 2419 Q96BP2 CHCHD1 Coiled-coil-helix-coiled-coil-helix domain-containing protein 1 yes yes 0 0 0 0 By MS/MS 6 0 1 1 65.082 65.037 2 0.00073475 20015 20211116_3445_TMUAki_TMT10x_S_F6 69.864 52.923 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17254 2419 15848 87379 105698 105698 1 SIQFVDWCPTGFK Unmodified 1583.7442 0.74424959 1417 P68363;P68363-2;P68366;P68366-2 TUBA1B;TUBA4A Tubulin alpha-1B chain;Tubulin alpha-4A chain yes no 0 0 0 0 By MS/MS By MS/MS 2.96 2.05 28 54 45 3 1 7 14 86 66 52.697 52.632 2;3 1.2069E-29 25354 20211116_3436_TMUAki_TMT10x_P_F8 246.26 217.53 889480000 1373800000 2259300 1433100000 815330000 1046000000 1025400000 340260000 261530000 454570000 882010000 828100000 1282100000 59001000 1452000000 786350000 1073600000 1005100000 384990000 321510000 439250000 831630000 165 165 74 165 164 165 164 165 165 165 165 570690000 850140000 514530 867420000 518110000 779940000 672540000 206940000 160250000 281330000 542900000 531310000 793330000 36780000 882380000 500220000 787070000 657950000 241550000 199020000 271700000 511870000 93 93 34 93 92 93 92 93 93 93 93 318790000 523620000 1744800 565680000 297220000 266070000 352820000 133320000 101280000 173240000 339100000 296790000 488750000 22221000 569640000 286130000 286550000 347190000 143440000 122480000 167550000 319760000 72 72 40 72 72 72 72 72 72 72 72 139650000000 77302000000 62344000000 17255 1417 15849 87380;87381;87382;87383;87384;87385;87386;87387;87388;87389;87390;87391;87392;87393;87394;87395;87396;87397;87398;87399;87400;87401;87402;87403;87404;87405;87406;87407;87408;87409;87410;87411;87412;87413;87414;87415;87416;87417;87418;87419;87420;87421;87422;87423;87424;87425;87426;87427;87428;87429;87430;87431;87432;87433;87434;87435;87436;87437;87438;87439;87440;87441;87442;87443;87444;87445;87446;87447;87448;87449;87450;87451;87452;87453;87454;87455;87456;87457;87458;87459;87460;87461;87462;87463;87464;87465;87466;87467;87468;87469;87470;87471;87472;87473;87474;87475;87476;87477;87478;87479;87480;87481;87482;87483;87484;87485;87486;87487;87488;87489;87490;87491;87492;87493;87494;87495;87496;87497;87498;87499;87500;87501;87502;87503;87504;87505;87506;87507;87508;87509;87510;87511;87512;87513;87514;87515;87516;87517;87518;87519;87520;87521;87522;87523;87524;87525;87526;87527;87528;87529;87530;87531 105699;105700;105701;105702;105703;105704;105705;105706;105707;105708;105709;105710;105711;105712;105713;105714;105715;105716;105717;105718;105719;105720;105721;105722;105723;105724;105725;105726;105727;105728;105729;105730;105731;105732;105733;105734;105735;105736;105737;105738;105739;105740;105741;105742;105743;105744;105745;105746;105747;105748;105749;105750;105751;105752;105753;105754;105755;105756;105757;105758;105759;105760;105761;105762;105763;105764;105765;105766;105767;105768;105769;105770;105771;105772;105773;105774;105775;105776;105777;105778;105779;105780;105781;105782;105783;105784;105785;105786;105787;105788;105789;105790;105791;105792;105793;105794;105795;105796;105797;105798;105799;105800;105801;105802;105803;105804;105805;105806;105807;105808;105809;105810;105811;105812;105813;105814;105815;105816;105817;105818;105819;105820;105821;105822;105823;105824;105825;105826;105827;105828;105829;105830;105831;105832;105833;105834;105835;105836;105837;105838;105839;105840;105841;105842;105843;105844;105845;105846;105847;105848;105849;105850;105851;105852;105853;105854;105855;105856;105857;105858;105859;105860;105861;105862;105863;105864;105865;105866;105867;105868;105869;105870;105871;105872;105873;105874;105875;105876;105877;105878;105879;105880;105881;105882;105883;105884;105885;105886;105887;105888;105889;105890;105891;105892;105893;105894;105895;105896;105897;105898 105803 200 SIQLDGLVWGASK Unmodified 1372.7351 0.73506511 856;855 P29692;P29692-3;P29692-4;P29692-2 EEF1D Elongation factor 1-delta no no 0 0 0 0 By MS/MS By MS/MS 5.73 2.93 3 4 4 6 5 75.297 75.277 2;3 9.3591E-23 23893 20211116_3447_TMUAki_TMT10x_S_F8 212.1 159.62 37699000 62036000 556030 61616000 44676000 47380000 47865000 24882000 21580000 27871000 41832000 35103000 57884000 3434500 62675000 42931000 48641000 47571000 26523000 23823000 27097000 39726000 8 8 5 8 8 8 8 8 8 8 8 17426000 27881000 534030 28388000 20840000 29417000 25497000 11875000 9876900 13070000 19302000 16229000 26018000 1990300 28940000 20132000 29510000 25136000 12995000 11066000 12715000 18328000 4 4 4 4 4 4 4 4 4 4 4 20272000 34154000 22002 33228000 23835000 17964000 22368000 13007000 11703000 14801000 22530000 18873000 31866000 1444300 33735000 22799000 19131000 22435000 13529000 12757000 14381000 21399000 4 4 1 4 4 4 4 4 4 4 4 7568400000 4256200000 3312200000 17256 855;856 15850 87532;87533;87534;87535;87536;87537;87538;87539;87540;87541;87542 105899;105900;105901;105902;105903;105904;105905;105906;105907;105908;105909 105908 11 SIRDTPAK Unmodified 886.48723 0.48723027 524 P06748;P06748-3 NPM1 Nucleophosmin yes no 0 0 0 1 By MS/MS By matching 3.14 1.64 2 1 2 2 6 1 28.713 28.686 2;3 0.001905 6213 20211116_3433_TMUAki_TMT10x_P_F5 100.57 56.038 7989000 11580000 36191 9074200 6919000 11321000 7253300 5087300 5538900 5750700 7798400 7438300 10796000 625460 9467700 6641300 11254000 7286800 5506800 5790100 5589100 7452900 6 6 1 6 6 6 6 6 6 6 6 7989000 11580000 36191 9074200 6919000 11321000 7253300 5087300 5538900 5750700 7798400 7438300 10796000 625460 9467700 6641300 11254000 7286800 5506800 5790100 5589100 7452900 6 6 1 6 6 6 6 6 6 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 510010000 507480000 2533000 17257 524 15851 87543;87544;87545;87546;87547;87548;87549 105910;105911;105912;105913;105914 105913 5 SIRPDNMSEYSK Oxidation (M) 1441.6507 0.65074314 2362;1645 Q13547;Q92769;Q92769-3 HDAC1;HDAC2 Histone deacetylase 1;Histone deacetylase 2 no no 0 0 1 1 By MS/MS By MS/MS 5 0 2 1 1 32.08 32.02 3 0.017039 6376 20211116_3444_TMUAki_TMT10x_S_F5 61.235 45.011 1146500 1849300 97049 2125700 3438200 2111600 1351000 1133100 1387200 887140 1449900 1068200 1726600 217600 2148800 3250100 2130100 1480700 1194000 1411900 876560 1396700 1 1 1 1 1 1 1 1 1 1 1 1146500 1849300 97049 2125700 3438200 2111600 1351000 1133100 1387200 887140 1449900 1068200 1726600 217600 2148800 3250100 2130100 1480700 1194000 1411900 876560 1396700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 102910000 102910000 0 17258 1645;2362 15852 87550;87551 105915;105916 105916 2214 2 SIRPGLSPYR Unmodified 1144.6353 0.63529149 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 33.504 33.273 3 2.7256E-05 8821 20211116_3429_TMUAki_TMT10x_P_F2 132.32 94.979 1129600 1938600 8681.3 1921600 2182900 1977300 1331500 1411300 1492600 1228400 1730400 1051800 1808900 116490 1962400 2072200 1998200 1400100 1458000 1519800 1207200 1661900 2 2 2 2 2 2 2 2 2 2 2 569330 954150 2786.8 951570 1570600 1422300 756220 689160 739930 609130 866860 530120 890310 63822 977980 1485700 1403400 809150 735290 757970 598200 832300 1 1 1 1 1 1 1 1 1 1 1 560250 984450 5894.6 970060 612300 555060 575310 722180 752620 619230 863540 521690 918540 52671 984430 586530 594810 590980 722740 761840 609020 829590 1 1 1 1 1 1 1 1 1 1 1 94104000 41053000 53051000 17259 1730 15853 87552;87553 105917;105918 105917 2 SIRPLLEGR Unmodified 1039.6138 0.61382777 2976 Q9NVP1 DDX18 ATP-dependent RNA helicase DDX18 yes yes 0 0 0 1 By MS/MS By MS/MS 5 2.92 2 1 1 2 2 5 3 35.665 35.85 3 3.2596E-06 8743 20211116_3428_TMUAki_TMT10x_P_F1 164.1 97.537 2837600 4562800 51917 4988200 5413400 4307300 3188200 3496900 3717300 3022500 4028300 2642400 4259200 317120 5048500 5137600 4411800 3366700 3582200 3769600 2971500 3876300 9 9 8 9 9 9 9 9 9 9 9 1287300 2044300 31104 2284300 3687400 3095300 1685000 1641300 1696000 1397500 1792800 1198800 1908500 169330 2325500 3487200 3070600 1814200 1734800 1728400 1374900 1726500 4 4 4 4 4 4 4 4 4 4 4 1550300 2518500 20812 2703900 1726000 1212000 1503200 1855600 2021300 1625000 2235500 1443600 2350700 147790 2723000 1650400 1341200 1552400 1847300 2041200 1596600 2149800 5 5 4 5 5 5 5 5 5 5 5 402080000 202010000 200070000 17260 2976 15854 87554;87555;87556;87557;87558;87559;87560;87561 105919;105920;105921;105922;105923;105924;105925;105926;105927 105919 9 SISISVAR Unmodified 831.48142 0.48141661 40 P04264;CON__P04264 KRT1 Keratin, type II cytoskeletal 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 37.283 37.31 2 0.010576 10881 20211116_3430_TMUAki_TMT10x_P_F3 81.89 56.491 + 1172000 1652200 430380 2268600 1073500 1812400 973700 1199000 1010900 1339000 1417400 1094400 1544000 496890 2264000 1052900 1860700 994040 1254200 1041200 1302000 1354800 2 2 2 2 2 2 2 2 2 2 2 1172000 1652200 430380 2268600 1073500 1812400 973700 1199000 1010900 1339000 1417400 1094400 1544000 496890 2264000 1052900 1860700 994040 1254200 1041200 1302000 1354800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4989700 4989700 0 17261 40 15855 87562 105928;105929 105929 2 SISLYYTGEK Unmodified 1159.5761 0.57610486 729 P19338 NCL Nucleolin yes yes 0 0 0 0 By MS/MS By MS/MS 6.53 1.2 1 2 4 4 4 8 7 54.053 54.325 2;3 2.4558E-33 16990 20211116_3435_TMUAki_TMT10x_P_F7 280.03 197.76 121390000 184620000 1050600 216470000 184990000 186220000 124270000 157420000 157920000 142250000 159660000 113030000 172390000 11241000 218130000 175870000 190930000 130270000 161050000 159240000 139550000 153960000 16 16 10 16 16 16 16 16 16 16 16 56822000 84364000 717530 99634000 119580000 130350000 65195000 73369000 73438000 64459000 71759000 52910000 78778000 6086300 101020000 113330000 129620000 69229000 77206000 74290000 63321000 69275000 7 7 5 7 7 7 7 7 7 7 7 64571000 100250000 333030 116830000 65404000 55867000 59075000 84051000 84478000 77789000 87901000 60120000 93609000 5154400 117110000 62540000 61307000 61040000 83848000 84952000 76231000 84689000 9 9 5 9 9 9 9 9 9 9 9 22383000000 11971000000 10412000000 17262 729 15856 87563;87564;87565;87566;87567;87568;87569;87570;87571;87572;87573;87574;87575;87576;87577 105930;105931;105932;105933;105934;105935;105936;105937;105938;105939;105940;105941;105942;105943;105944;105945;105946;105947;105948 105935 19 SISMTTFTQQEIEFLQK Oxidation (M) 2045.998 0.99795767 1180 P52594;P52594-2;P52594-3;P52594-4 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 yes no 0 0 1 0 By MS/MS By MS/MS 6 0 3 2 1 75.163 75.11 3 1.6259E-21 23771 20211116_3434_TMUAki_TMT10x_P_F6 161.82 143.91 3451500 6425100 148300 5379800 3786800 5891200 4418400 4154700 3731500 4289300 4727700 3214800 5991400 429060 5569700 3655800 5931000 4427500 4315800 3861500 4183600 4529800 2 2 2 2 2 2 2 2 2 2 2 1796700 3361100 60670 2641900 1618100 3556200 2160000 2210200 1834900 2044300 2424000 1673300 3133600 203000 2759600 1568800 3536200 2152600 2310100 1901800 2003400 2320100 1 1 1 1 1 1 1 1 1 1 1 1654800 3064000 87634 2737900 2168700 2335000 2258400 1944500 1896600 2245000 2303700 1541400 2857800 226060 2810100 2087000 2394800 2274900 2005700 1959700 2180200 2209700 1 1 1 1 1 1 1 1 1 1 1 662990000 372340000 290650000 17263 1180 15857 87578;87579;87580 105949;105950;105951 105949 1588 3 SITADPLDYR Unmodified 1149.5666 0.5666028 1194 P52948;P52948-6;P52948-5 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 0 0 0 0 By matching By MS/MS 3 0 2 1 1 51.614 51.367 2 0.010465 17728 20211116_3441_TMUAki_TMT10x_S_F3 66.504 39.542 1384800 2240300 26777 2765400 1071700 1118100 1026800 1747000 1583700 1541700 1836900 1289500 2092400 135380 2759500 1028100 1254800 1061100 1738400 1595700 1514100 1764200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1384800 2240300 26777 2765400 1071700 1118100 1026800 1747000 1583700 1541700 1836900 1289500 2092400 135380 2759500 1028100 1254800 1061100 1738400 1595700 1514100 1764200 1 1 1 1 1 1 1 1 1 1 1 145990000 110530000 35453000 17264 1194 15858 87581;87582 105952 105952 1 SITILSTPEGTSAACK Unmodified 1634.8185 0.81853675 86 O00425 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 54.656 54.749 3 0.0055096 15388 20211116_3434_TMUAki_TMT10x_P_F6 56.774 35.523 16415000 22841000 289120 27647000 43323000 37383000 19026000 20883000 23138000 17834000 23125000 15286000 21331000 2007200 28011000 40947000 37112000 20697000 21973000 23359000 17543000 22308000 1 1 1 1 1 1 1 1 1 1 1 16415000 22841000 289120 27647000 43323000 37383000 19026000 20883000 23138000 17834000 23125000 15286000 21331000 2007200 28011000 40947000 37112000 20697000 21973000 23359000 17543000 22308000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 598690000 598690000 0 17265 86 15859 87583;87584 105953;105954 105953 2 SITVLVEGENTR Unmodified 1316.6936 0.69359423 913 P33993;P33993-3;P33993-2 MCM7 DNA replication licensing factor MCM7 yes no 0 0 0 0 By MS/MS By MS/MS 3.11 1.2 1 2 2 3 1 5 4 50.353 50.341 2;3 1.5789E-39 14896 20211116_3442_TMUAki_TMT10x_S_F4 295.32 255.25 24331000 37692000 33327 41368000 30930000 35399000 24639000 25408000 25419000 23670000 29952000 22652000 35185000 1849100 41854000 29482000 36206000 25346000 26285000 25986000 23189000 28754000 9 9 2 9 9 9 9 9 9 9 9 15725000 23720000 0 26699000 22249000 28105000 16648000 15712000 15554000 14522000 18923000 14640000 22145000 1167400 27048000 21178000 28266000 17146000 16565000 15991000 14232000 18150000 5 5 0 5 5 5 5 5 5 5 5 8605600 13972000 33327 14670000 8680600 7294000 7991000 9695600 9864900 9147600 11029000 8012400 13040000 681670 14806000 8303900 7939600 8199700 9720200 9995200 8956600 10603000 4 4 2 4 4 4 4 4 4 4 4 3566000000 2176200000 1389900000 17266 913 15860 87585;87586;87587;87588;87589;87590;87591;87592;87593 105955;105956;105957;105958;105959;105960;105961;105962;105963;105964;105965 105963 11 SIVDKEGVPR Unmodified 1098.6033 0.60332266 2588 Q99613;Q99613-2;B5ME19 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.225 35.279 3 0.00075962 8850 20211116_3433_TMUAki_TMT10x_P_F5 89.805 51.501 1953800 3514200 15832 2469500 3945000 4042200 2897600 2621600 2684200 2451200 3097900 1819300 3275200 204630 2616600 3757300 3989000 2987400 2732100 2754700 2401000 2975600 2 2 2 2 2 2 2 2 2 2 2 1338600 2383700 10251 1640200 3158600 3428000 2176900 1917400 1910400 1756500 2073500 1246500 2221400 146020 1752500 3004500 3348000 2251300 2020900 1961000 1722100 1995200 1 1 1 1 1 1 1 1 1 1 1 615170 1130500 5580.9 829300 786460 614290 720680 704180 773750 694740 1024400 572820 1053800 58602 864090 752780 641080 736100 711140 793730 678910 980410 1 1 1 1 1 1 1 1 1 1 1 155420000 124060000 31357000 17267 2588 15861 87594;87595;87596 105966;105967 105966 2 SIVEEIEDLVAR Unmodified 1371.7246 0.72456001 495 P04844;P04844-2 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS 1.86 0.833 3 2 2 3 4 81.213 81.186 2;3 1.5409E-38 26781 20211116_3428_TMUAki_TMT10x_P_F1 285.27 229.7 26370000 45761000 83433 40873000 26921000 33772000 35232000 16701000 17798000 22464000 29350000 24550000 42682000 1854100 41936000 26000000 34459000 34763000 18014000 19279000 21702000 27956000 4 4 2 4 4 4 4 4 4 4 4 11551000 17855000 39127 18213000 10181000 17244000 12383000 7416200 8098700 9099800 12524000 10754000 16662000 837590 18541000 9811200 17406000 12313000 8086700 8583500 8818000 11944000 2 2 1 2 2 2 2 2 2 2 2 14819000 27906000 44306 22659000 16740000 16528000 22849000 9284300 9699300 13364000 16827000 13796000 26020000 1016500 23395000 16189000 17053000 22450000 9927300 10696000 12884000 16012000 2 2 1 2 2 2 2 2 2 2 2 8210000000 5730500000 2479500000 17268 495 15862 87597;87598;87599;87600;87601;87602;87603 105968;105969;105970;105971;105972;105973 105968 6 SIVEGIIEEEEEDEEGSESISK Unmodified 2436.0915 0.091519526 3313 Q9Y570;Q9Y570-4;Q9Y570-2 PPME1 Protein phosphatase methylesterase 1 yes no 0 0 0 0 By MS/MS 2 0 1 1 18.677 18.501 3 0.085433 3748 20211116_3429_TMUAki_TMT10x_P_F2 27.72 18.189 10007 10620 2039.1 15807 10337 12650 8402.8 10328 7478.8 6634.4 9796.7 9332.9 9928.5 2734.6 15712 9986.8 13030 8595.8 10508 7731.1 6631.7 9378.8 1 1 1 1 1 1 1 1 1 1 1 10007 10620 2039.1 15807 10337 12650 8402.8 10328 7478.8 6634.4 9796.7 9332.9 9928.5 2734.6 15712 9986.8 13030 8595.8 10508 7731.1 6631.7 9378.8 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 446730 446730 0 17269 3313 15863 87604 105974 105974 1 SIVGEIVR Unmodified 871.51272 0.51271674 1754 Q15021 NCAPD2 Condensin complex subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 46.659 46.829 2 0.020795 12241 20211116_3444_TMUAki_TMT10x_S_F5 71.491 36.341 7608000 13277000 6069.4 14320000 10651000 11691000 9149800 15264000 16563000 14079000 14097000 7082800 12393000 556900 14496000 10167000 12152000 9589000 15303000 16438000 13799000 13676000 3 3 1 3 3 3 3 3 3 3 3 1840800 3661500 6069.4 3834700 5453400 5962900 3866600 4862800 5277800 4485500 4439100 1714000 3417200 208870 3931700 5189500 5918700 4048700 4988300 5277700 4396300 4308200 1 1 1 1 1 1 1 1 1 1 1 5767100 9615600 0 10485000 5197200 5728000 5283200 10401000 11286000 9593300 9658200 5368800 8975600 348030 10564000 4977600 6233800 5540300 10315000 11161000 9402600 9367300 2 2 0 2 2 2 2 2 2 2 2 441470000 243930000 197540000 17270 1754 15864 87605;87606;87607 105975;105976 105976 2 SIVGMKTVLSVPHRR Oxidation (M) 1694.9614 0.96139343 3210 Q9UPP2;Q9UPP2-2 IQSEC3 IQ motif and SEC7 domain-containing protein 3 yes no 0 0 1 2 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 62.57 62.639 4 0.031362 19059 20211116_3445_TMUAki_TMT10x_S_F6 42.568 13.24 34954000 57263000 64110 49761000 40423000 29423000 35137000 26047000 15846000 20987000 38326000 32546000 53405000 3034300 50990000 38630000 31152000 35320000 26501000 17763000 20705000 36276000 2 2 2 2 2 2 2 2 2 2 2 4780600 6744600 56861 6476900 5998800 8106100 5572200 4307800 3347600 3862100 5542900 4451600 6292400 466400 6650800 5744700 8072100 5605600 4558200 3580800 3790300 5279100 1 1 1 1 1 1 1 1 1 1 1 30174000 50519000 7248.9 43284000 34424000 21316000 29565000 21739000 12499000 17125000 32783000 28095000 47112000 2567900 44340000 32886000 23080000 29715000 21943000 14182000 16915000 30997000 1 1 1 1 1 1 1 1 1 1 1 3906900000 764990000 3141900000 17271 3210 15865 87608;87609 105977 105977 3194 1 SIVIRPLEPQPAPHLAR Unmodified 1893.0949 0.094850444 1757 Q15029;Q15029-2;Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 1 By MS/MS By MS/MS 3.1 2.55 3 3 2 2 6 4 44.259 44.162 3;4 2.7727E-29 11791 20211116_3440_TMUAki_TMT10x_S_F2 188.9 174.22 27733000 46185000 301700 53687000 55335000 60139000 40870000 41687000 43301000 36256000 43814000 25820000 43124000 2420100 54336000 52677000 60453000 42288000 43153000 43963000 35633000 42250000 16 16 11 16 16 16 16 16 16 16 16 21831000 36341000 213200 42991000 49846000 54831000 35324000 31893000 34082000 28147000 35013000 20324000 33935000 1870900 43565000 47408000 54613000 36551000 33472000 34760000 27645000 33747000 10 10 7 10 10 10 10 10 10 10 10 5902200 9844200 88500 10697000 5488100 5307800 5546600 9794100 9219000 8108600 8800800 5496000 9188800 549150 10771000 5268000 5840500 5736800 9681100 9203200 7988700 8502700 6 6 4 6 6 6 6 6 6 6 6 8562900000 6034600000 2528300000 17272 1757 15866 87610;87611;87612;87613;87614;87615;87616;87617;87618;87619 105978;105979;105980;105981;105982;105983;105984;105985;105986;105987;105988;105989;105990;105991;105992;105993 105990 16 SIVPTMHYQDSLPR Oxidation (M) 1658.8086 0.80864076 789 P23786 CPT2 Carnitine O-palmitoyltransferase 2, mitochondrial yes yes 0 0 1 0 By MS/MS 6 0 1 1 40.525 40.554 3 0.0014164 9666 20211116_3434_TMUAki_TMT10x_P_F6 65.092 49.705 974510 1736200 0 1881100 2901200 2531600 1510600 1413000 1662200 1100900 1458200 907030 1620600 66955 1918600 2744200 2513800 1609700 1483800 1677100 1088100 1413000 1 1 0 1 1 1 1 1 1 1 1 974510 1736200 0 1881100 2901200 2531600 1510600 1413000 1662200 1100900 1458200 907030 1620600 66955 1918600 2744200 2513800 1609700 1483800 1677100 1088100 1413000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 397790000 397790000 0 17273 789 15867 87620 105994 105994 933 1 SIWAFGPDATGPNILVDDTLPSEVDK Unmodified 2756.3545 0.35449135 1757 Q15029;Q15029-2;Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 By MS/MS By MS/MS 3.83 1.34 1 2 1 1 1 3 3 80.501 80.483 3 2.4269E-13 29426 20211116_3441_TMUAki_TMT10x_S_F3 120.63 113.18 4778900 7510300 30575 7539000 5207300 5332900 5823200 2322600 1930500 2772700 4754000 4449800 7008000 430700 7656000 5010400 5501200 5754000 2526900 2234400 2689400 4498600 3 3 3 3 3 3 3 3 3 3 3 2257300 3312100 27626 3493900 2036500 3160700 2532600 1372400 1066100 1680100 2338900 2102000 3091200 209800 3546500 1966800 3200300 2497500 1494800 1193900 1628200 2216900 2 2 2 2 2 2 2 2 2 2 2 2521600 4198100 2948.3 4045100 3170900 2172200 3290700 950210 864350 1092500 2415000 2347800 3916700 220900 4109500 3043600 2301000 3256500 1032000 1040500 1061200 2281700 1 1 1 1 1 1 1 1 1 1 1 2641000000 1574500000 1066500000 17274 1757 15868 87621;87622;87623;87624;87625;87626 105995;105996;105997;105998 105998 4 SIYDDISSPGLGSTPLTSR Unmodified 1964.9691 0.96910039 2253 Q8NFH5;Q8NFH5-2 NUP35 Nucleoporin NUP53 yes no 0 0 0 0 By MS/MS 5 0 1 1 66.736 66.849 3 0.0015288 21535 20211116_3433_TMUAki_TMT10x_P_F5 64.26 46.771 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17275 2253 15869 87627 105999 105999 1 SIYEGDESFRELSPVSFQYR Unmodified 2408.1285 0.12845458 1985 Q6NW29 RWDD4 RWD domain-containing protein 4 yes yes 0 0 0 1 By MS/MS 6 0 1 1 67.729 67.663 3 3.0715E-42 21136 20211116_3445_TMUAki_TMT10x_S_F6 216.65 201.72 1374500 2342600 0 2172100 2146800 1602700 1637900 2025000 1727500 1753100 1893200 1279700 2185300 119780 2219500 2045300 1677400 1690800 2029500 1759400 1723400 1821200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1374500 2342600 0 2172100 2146800 1602700 1637900 2025000 1727500 1753100 1893200 1279700 2185300 119780 2219500 2045300 1677400 1690800 2029500 1759400 1723400 1821200 1 1 0 1 1 1 1 1 1 1 1 405160000 0 405160000 17276 1985 15870 87628 106000 106000 1 SIYGEKFEDENFILK Unmodified 1830.904 0.90398093 1385 P62937;P62937-2 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 0 0 0 1 By MS/MS By MS/MS 5.39 1.58 2 5 18 32 33 32 58 5 100 85 57.826 57.866 2;3;4 9.3119E-32 21381 20211116_3436_TMUAki_TMT10x_P_F8 231.06 189.02 1764700000 2965900000 19038000 2574300000 2140400000 2994400000 2080800000 2151800000 2026400000 2057200000 2198000000 1643300000 2766000000 162860000 2660200000 2051700000 3005600000 2112100000 2227500000 2070000000 2013100000 2115000000 194 194 93 194 194 194 194 194 194 194 194 1015700000 1633200000 11772000 1444400000 1106800000 2099400000 1176900000 1200000000 1113800000 1136500000 1224200000 945770000 1523200000 92421000 1496700000 1063600000 2078100000 1188200000 1263600000 1139800000 1112600000 1177500000 119 119 58 119 119 119 119 119 119 119 119 749060000 1332800000 7265600 1129900000 1033600000 894970000 903900000 951710000 912620000 920680000 973810000 697480000 1242800000 70443000 1163500000 988050000 927500000 923920000 963840000 930220000 900460000 937510000 75 75 35 75 75 75 75 75 75 75 75 517140000000 259710000000 257430000000 17277 1385 15871 87629;87630;87631;87632;87633;87634;87635;87636;87637;87638;87639;87640;87641;87642;87643;87644;87645;87646;87647;87648;87649;87650;87651;87652;87653;87654;87655;87656;87657;87658;87659;87660;87661;87662;87663;87664;87665;87666;87667;87668;87669;87670;87671;87672;87673;87674;87675;87676;87677;87678;87679;87680;87681;87682;87683;87684;87685;87686;87687;87688;87689;87690;87691;87692;87693;87694;87695;87696;87697;87698;87699;87700;87701;87702;87703;87704;87705;87706;87707;87708;87709;87710;87711;87712;87713;87714;87715;87716;87717;87718;87719;87720;87721;87722;87723;87724;87725;87726;87727;87728;87729;87730;87731;87732;87733;87734;87735;87736;87737;87738;87739;87740;87741;87742;87743;87744;87745;87746;87747;87748;87749;87750;87751;87752;87753;87754;87755;87756;87757;87758;87759;87760;87761;87762;87763;87764;87765;87766;87767;87768;87769;87770;87771;87772;87773;87774;87775;87776;87777;87778;87779;87780;87781;87782;87783;87784;87785;87786;87787;87788;87789;87790;87791;87792;87793;87794;87795;87796;87797;87798;87799;87800;87801;87802;87803;87804;87805;87806;87807;87808;87809;87810;87811;87812;87813 106001;106002;106003;106004;106005;106006;106007;106008;106009;106010;106011;106012;106013;106014;106015;106016;106017;106018;106019;106020;106021;106022;106023;106024;106025;106026;106027;106028;106029;106030;106031;106032;106033;106034;106035;106036;106037;106038;106039;106040;106041;106042;106043;106044;106045;106046;106047;106048;106049;106050;106051;106052;106053;106054;106055;106056;106057;106058;106059;106060;106061;106062;106063;106064;106065;106066;106067;106068;106069;106070;106071;106072;106073;106074;106075;106076;106077;106078;106079;106080;106081;106082;106083;106084;106085;106086;106087;106088;106089;106090;106091;106092;106093;106094;106095;106096;106097;106098;106099;106100;106101;106102;106103;106104;106105;106106;106107;106108;106109;106110;106111;106112;106113;106114;106115;106116;106117;106118;106119;106120;106121;106122;106123;106124;106125;106126;106127;106128;106129;106130;106131;106132;106133;106134;106135;106136;106137;106138;106139;106140;106141;106142;106143;106144;106145;106146;106147;106148;106149;106150;106151;106152;106153;106154;106155;106156;106157;106158;106159;106160;106161;106162;106163;106164;106165;106166;106167;106168;106169;106170;106171;106172;106173;106174;106175;106176;106177;106178;106179;106180;106181;106182;106183;106184;106185;106186;106187;106188;106189;106190;106191;106192;106193;106194;106195;106196;106197;106198;106199;106200;106201;106202;106203;106204;106205;106206;106207;106208;106209;106210;106211;106212;106213;106214;106215;106216;106217;106218;106219;106220;106221;106222;106223;106224;106225;106226 106135 226 SIYGERFPDENFK Unmodified 1600.7522 0.75217174 779 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 0 1 By MS/MS By MS/MS 5.33 1.55 2 2 2 3 2 1 6 6 51.43 51.589 2;3 2.182E-34 14145 20211116_3434_TMUAki_TMT10x_P_F6 241.39 200.66 99332000 164500000 1136100 190520000 135210000 139490000 97655000 128560000 126150000 112470000 137220000 92493000 153600000 9423300 191760000 128740000 145010000 101900000 130780000 127480000 110510000 132030000 15 15 11 15 15 15 15 15 15 15 15 42145000 66203000 397450 76110000 77079000 90805000 54569000 52239000 50566000 45708000 53160000 39242000 61811000 4117100 77165000 73349000 90733000 56404000 54864000 51709000 44910000 51201000 5 5 3 5 5 5 5 5 5 5 5 57187000 98301000 738700 114410000 58130000 48687000 43087000 76321000 75580000 66766000 84061000 53251000 91786000 5306200 114590000 55395000 54274000 45497000 75917000 75769000 65601000 80828000 10 10 8 10 10 10 10 10 10 10 10 18983000000 9632500000 9350800000 17278 779 15872 87814;87815;87816;87817;87818;87819;87820;87821;87822;87823;87824;87825 106227;106228;106229;106230;106231;106232;106233;106234;106235;106236;106237;106238;106239;106240;106241;106242;106243 106232 17 SIYGSRFPDENFTLK Unmodified 1772.8733 0.87334951 871 P30405;P30405-2 PPIF Peptidyl-prolyl cis-trans isomerase F, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 59.204 59.288 3 1.128E-14 17323 20211116_3447_TMUAki_TMT10x_S_F8 156.11 117.11 14078000 22356000 281810 22990000 17505000 18651000 13290000 17776000 16374000 14596000 16674000 13110000 20863000 1477800 23344000 16696000 19249000 13796000 18023000 16534000 14387000 16075000 2 2 2 2 2 2 2 2 2 2 2 6483400 11096000 178830 10805000 7178700 12530000 7059300 9069700 8568100 7533500 8058300 6038000 10353000 713910 11069000 6891100 12580000 7213500 9350000 8632400 7420900 7789300 1 1 1 1 1 1 1 1 1 1 1 7595000 11260000 102980 12185000 10326000 6121400 6230600 8706700 7806000 7063000 8615700 7072400 10510000 763900 12275000 9804400 6668200 6582800 8672700 7901100 6965800 8286100 1 1 1 1 1 1 1 1 1 1 1 1535000000 851440000 683580000 17279 871 15873 87826;87827 106244;106245 106245 2 SIYSQIQEQR Unmodified 1250.6255 0.62551466 2960 Q9NV06 DCAF13 DDB1- and CUL4-associated factor 13 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 37.868 38.026 2 8.6674E-05 9958 20211116_3442_TMUAki_TMT10x_S_F4 125.74 100.6 165760 244850 0 360240 116720 106910 86058 201450 248160 173410 212970 154300 228900 8224 355560 110830 126660 93913 199210 244110 170510 206540 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 165760 244850 0 360240 116720 106910 86058 201450 248160 173410 212970 154300 228900 8224 355560 110830 126660 93913 199210 244110 170510 206540 1 1 0 1 1 1 1 1 1 1 1 19914000 0 19914000 17280 2960 15874 87828;87829 106246;106247 106247 2 SIYVGNVDYGATAEELEAHFHGCGSVNR Unmodified 3051.3781 0.37809711 2102 Q86U42;Q86U42-2;Q92843-2 PABPN1 Polyadenylate-binding protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 6 0.707 1 2 1 2 2 66.61 66.711 4 0.073824 20666 20211116_3445_TMUAki_TMT10x_S_F6 32.009 21.679 44185000 74068000 2360300 69131000 60003000 70886000 54704000 45542000 31954000 36918000 56628000 41157000 69095000 3606700 70900000 57534000 71536000 55062000 47325000 34379000 36411000 53863000 6 6 1 6 6 6 6 6 6 6 6 32340000 57722000 2360300 53014000 51991000 61770000 44774000 33363000 23038000 27477000 42212000 30128000 53844000 3606700 54547000 49803000 61749000 45120000 35179000 25068000 27078000 40127000 4 4 1 4 4 4 4 4 4 4 4 11845000 16346000 0 16117000 8012500 9115900 9930400 12179000 8916100 9440600 14416000 11029000 15251000 0 16353000 7731000 9787300 9941100 12146000 9310100 9333000 13736000 2 2 0 2 2 2 2 2 2 2 2 7626800000 3384400000 4242400000 17281 2102 15875 87830;87831;87832;87833 106248 106248 1 SIYYITGESK Unmodified 1159.5761 0.57610486 553;1914 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 no no 0 0 0 0 By MS/MS By MS/MS 5.65 1.23 4 4 4 4 1 9 8 52.291 52.559 2;3 6.0798E-14 15618 20211116_3433_TMUAki_TMT10x_P_F5 223.84 158.59 115800000 169400000 396390 237690000 213100000 160650000 124410000 149600000 159120000 120040000 168740000 107820000 158320000 10834000 236500000 202090000 168170000 131900000 151780000 160700000 118460000 162480000 18 18 10 18 18 18 18 18 18 18 18 48607000 67396000 291220 94676000 152820000 112330000 62876000 60138000 69645000 49712000 67082000 45259000 62990000 5618200 94922000 144280000 112170000 68691000 63466000 70465000 48981000 64791000 9 9 6 9 9 9 9 9 9 9 9 67194000 102000000 105170 143010000 60277000 48328000 61531000 89461000 89471000 70330000 101650000 62562000 95330000 5215800 141580000 57811000 55998000 63213000 88309000 90231000 69476000 97686000 9 9 4 9 9 9 9 9 9 9 9 27865000000 15068000000 12796000000 17282 553;1914 15876 87834;87835;87836;87837;87838;87839;87840;87841;87842;87843;87844;87845;87846;87847;87848;87849;87850 106249;106250;106251;106252;106253;106254;106255;106256;106257;106258;106259;106260;106261;106262;106263;106264;106265;106266;106267;106268 106251 20 SIYYITGESKEQVANSAFVER Unmodified 2390.1754 0.17540477 553 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 1 By MS/MS By MS/MS 7.29 0.7 1 3 3 4 3 61.823 62.128 3;4 1.1462E-26 18458 20211116_3447_TMUAki_TMT10x_S_F8 174.7 159.93 46236000 85594000 869380 64464000 64446000 103720000 59393000 109650000 93780000 81324000 77510000 43055000 79789000 4664200 67844000 61704000 103380000 61573000 110340000 93323000 80592000 75275000 10 10 5 10 10 10 10 10 10 10 10 32775000 59742000 789080 45905000 40877000 83249000 44186000 74664000 63248000 54984000 53162000 30522000 55694000 3478400 48367000 39320000 82312000 45237000 75757000 63152000 54511000 51596000 6 6 4 6 6 6 6 6 6 6 6 13462000 25852000 80299 18559000 23569000 20471000 15207000 34990000 30532000 26340000 24348000 12534000 24095000 1185800 19477000 22384000 21063000 16336000 34584000 30171000 26082000 23679000 4 4 1 4 4 4 4 4 4 4 4 12464000000 9481000000 2983500000 17283 553 15877 87851;87852;87853;87854;87855;87856;87857 106269;106270;106271;106272;106273;106274;106275;106276;106277;106278 106276 10 SKATNDEIFSILK Unmodified 1464.7824 0.78240924 1554 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 61.384 61.986 3 2.0411E-06 20741 20211116_3446_TMUAki_TMT10x_S_F7 114.64 88.043 16960000 28288000 167100 27190000 23389000 27262000 20645000 24302000 23474000 24762000 24616000 15792000 26392000 1557300 27817000 22361000 27702000 21172000 24872000 23798000 24165000 23710000 3 3 2 3 3 3 3 3 3 3 3 6984100 10808000 0 10395000 11112000 16806000 10369000 9285700 9070400 9649500 9638400 6502100 10083000 542320 10730000 10630000 16556000 10517000 9831500 9304600 9409200 9280300 1 1 0 1 1 1 1 1 1 1 1 9975600 17480000 167100 16794000 12277000 10456000 10276000 15017000 14404000 15113000 14977000 9289500 16308000 1015000 17087000 11732000 11146000 10656000 15041000 14493000 14756000 14430000 2 2 2 2 2 2 2 2 2 2 2 972270000 606430000 365840000 17284 1554 15878 87858;87859 106279;106280;106281 106281 3 SKDDAPHELESQFILR Unmodified 1883.9377 0.93774068 1814 Q15545 TAF7 Transcription initiation factor TFIID subunit 7 yes yes 0 0 0 1 By MS/MS By matching 4.67 0.471 1 2 2 1 50.057 50.236 4 2.5796E-07 14483 20211116_3431_TMUAki_TMT10x_P_F4 110.12 89.459 1429100 2460900 5744.8 2481800 3024500 3505300 2102900 2125800 2185200 2002100 2050400 1330600 2296400 146180 2545600 2877200 3476800 2183800 2227300 2214600 1960400 1982100 1 1 1 1 1 1 1 1 1 1 1 1429100 2460900 5744.8 2481800 3024500 3505300 2102900 2125800 2185200 2002100 2050400 1330600 2296400 146180 2545600 2877200 3476800 2183800 2227300 2214600 1960400 1982100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 764780000 659480000 105300000 17285 1814 15879 87860;87861;87862 106282 106282 1 SKDIFDQLAK Unmodified 1163.6186 0.61863837 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 1 By MS/MS By MS/MS 7 0.707 1 2 1 3 1 55.287 55.655 3 0.00068583 18103 20211116_3446_TMUAki_TMT10x_S_F7 91.914 58.028 34943000 55918000 931040 63181000 65376000 66906000 41112000 56033000 58032000 48935000 54753000 32541000 52204000 4128900 63998000 62128000 67686000 43494000 57307000 58180000 48085000 52920000 5 5 4 5 5 5 5 5 5 5 5 21192000 32579000 616550 36124000 52539000 55010000 30309000 31632000 32704000 28451000 31106000 19736000 30413000 2708500 36885000 49851000 54350000 31981000 33246000 33110000 27918000 30056000 3 3 2 3 3 3 3 3 3 3 3 13751000 23339000 314490 27057000 12838000 11897000 10803000 24401000 25327000 20484000 23648000 12806000 21792000 1420300 27113000 12277000 13336000 11514000 24061000 25071000 20167000 22864000 2 2 2 2 2 2 2 2 2 2 2 2175500000 1497600000 677940000 17286 799 15880 87863;87864;87865;87866 106283;106284;106285;106286;106287 106286 5 SKDPSGLLISVIR Unmodified 1383.8086 0.80856441 2404 Q96A65;Q96A65-2 EXOC4 Exocyst complex component 4 yes no 0 0 0 1 By MS/MS 2 0 1 1 63.046 62.809 3 0.00093163 19547 20211116_3440_TMUAki_TMT10x_S_F2 68.481 40.312 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17287 2404 15881 87867 106288 106288 1 SKDSLVDIIGICK Unmodified 1446.7752 0.77521537 828 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 6.2 2.64 1 2 2 2 3 66.053 66.225 3 5.2029E-06 21854 20211116_3435_TMUAki_TMT10x_P_F7 103.85 82.602 60111000 102040000 1429500 108660000 73610000 79212000 60806000 63752000 59584000 65403000 77286000 55980000 95235000 6445100 109940000 70341000 82165000 62309000 65648000 61298000 63808000 74007000 11 11 8 11 11 11 11 11 11 11 11 21222000 34244000 75595 36544000 31589000 43995000 26209000 22701000 22642000 22605000 26088000 19760000 31962000 1937400 37230000 30156000 43881000 26756000 24152000 23313000 22081000 25059000 4 4 2 4 4 4 4 4 4 4 4 38889000 67792000 1353900 72116000 42021000 35217000 34597000 41051000 36942000 42798000 51198000 36219000 63273000 4507700 72713000 40186000 38283000 35554000 41496000 37986000 41727000 48948000 7 7 6 7 7 7 7 7 7 7 7 5382300000 2887300000 2495000000 17288 828 15882 87868;87869;87870;87871;87872 106289;106290;106291;106292;106293;106294;106295;106296;106297;106298;106299 106289 11 SKDSLVQSCPGSLSLCAGVK Unmodified 2092.0293 0.029274578 3216 Q9UQ35;Q9UQ35-2 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 4 2 2 54.248 54.05 3;4 1.4277E-16 15658 20211116_3428_TMUAki_TMT10x_P_F1 141.97 121.88 7306000 11963000 44085 13196000 7923000 8777500 6956500 9326200 8388500 9075000 9506800 6802900 11168000 649670 13309000 7574900 9226800 7151200 9447100 8510900 8873500 9136300 4 4 3 4 4 4 4 4 4 4 4 1935500 3115100 4447.9 3187100 2754200 4209500 2600000 2327600 1782700 2223000 2477400 1802200 2907000 176080 3261600 2637200 4183000 2620000 2458400 1874000 2175400 2368300 1 1 1 1 1 1 1 1 1 1 1 5370500 8848300 39638 10009000 5168800 4568000 4356600 6998600 6605800 6852100 7029500 5000700 8260800 473600 10047000 4937700 5043800 4531200 6988700 6636800 6698100 6768000 3 3 2 3 3 3 3 3 3 3 3 519830000 224790000 295040000 17289 3216 15883 87873;87874;87875;87876 106300;106301;106302;106303;106304 106301 5 SKDVVEPLLRPQWYVR Unmodified 1984.0894 0.089430715 820 P26640 VARS Valine--tRNA ligase yes yes 0 0 0 2 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 58.723 58.438 4 1.5487E-35 20572 20211116_3441_TMUAki_TMT10x_S_F3 210.91 161.61 25208000 41676000 342590 38825000 33511000 32992000 30661000 22623000 17850000 23051000 31936000 23473000 38877000 2465600 39722000 32077000 33737000 30853000 23538000 19219000 22495000 30372000 4 4 3 4 4 4 4 4 4 4 4 7261200 11821000 26964 10796000 11364000 16147000 12426000 6170000 5119500 6681200 9002400 6761100 11026000 684600 11166000 10925000 15896000 12323000 6792000 5665700 6504100 8564100 1 1 1 1 1 1 1 1 1 1 1 17946000 29855000 315620 28029000 22147000 16844000 18235000 16453000 12730000 16370000 22934000 16712000 27851000 1781000 28556000 21152000 17841000 18530000 16746000 13554000 15991000 21808000 3 3 2 3 3 3 3 3 3 3 3 3386000000 1635800000 1750200000 17290 820 15884 87877;87878;87879;87880 106305;106306;106307;106308 106307 4 SKDYEFMWNPHLGYILTCPSNLGTGLR Oxidation (M) 3184.511 0.51102554 642 P12277 CKB Creatine kinase B-type yes yes 0 0 1 1 By MS/MS By MS/MS 2.71 0.452 2 5 4 3 74.022 73.835 4 3.7368E-26 26781 20211116_3441_TMUAki_TMT10x_S_F3 160.16 153.8 39776000 67391000 324370 57396000 45712000 57966000 51724000 28526000 22614000 34463000 44310000 37035000 62846000 2912100 59268000 43977000 58355000 51251000 30667000 25050000 33414000 42073000 15 15 7 15 15 15 15 15 15 15 15 21957000 37294000 232710 31191000 21926000 38888000 27660000 15656000 11896000 18356000 23979000 20445000 34777000 1734000 32366000 21174000 38620000 27269000 17171000 13221000 17816000 22758000 8 8 4 8 8 8 8 8 8 8 8 17819000 30097000 91657 26205000 23785000 19077000 24065000 12870000 10718000 16107000 20331000 16590000 28069000 1178100 26901000 22802000 19735000 23982000 13496000 11829000 15598000 19315000 7 7 3 7 7 7 7 7 7 7 7 17458000000 8573100000 8885000000 17291 642 15885 87881;87882;87883;87884;87885;87886;87887 106309;106310;106311;106312;106313;106314;106315;106316;106317;106318;106319;106320;106321;106322;106323 106321 684 15 SKDYEFMWNPHLGYILTCPSNLGTGLR Unmodified 3168.5161 0.51611092 642 P12277 CKB Creatine kinase B-type yes yes 0 0 0 1 By MS/MS By MS/MS 3.25 0.829 1 1 2 3 1 76.879 76.824 4 1.1478E-41 26955 20211116_3430_TMUAki_TMT10x_P_F3 181.92 168.96 18766000 29398000 0 28540000 19327000 21168000 20686000 9113500 9955000 10787000 17482000 17472000 27428000 1337900 29066000 18551000 21749000 20579000 9924500 10864000 10466000 16631000 3 3 0 3 3 3 3 3 3 3 3 13746000 20700000 0 20176000 13319000 17409000 15367000 6773600 7328900 7871700 12702000 12798000 19313000 992310 20578000 12814000 17667000 15232000 7456500 7998300 7642600 12087000 2 2 0 2 2 2 2 2 2 2 2 5020200 8698400 0 8364200 6007900 3759700 5318900 2339900 2626100 2915400 4780000 4673600 8115300 345630 8487600 5737900 4082200 5347900 2467900 2865900 2823600 4544400 1 1 0 1 1 1 1 1 1 1 1 7867700000 6624400000 1243300000 17292 642 15885 87888;87889;87890;87891 106324;106325;106326 106324 3 SKEDTIYEADLQYR Unmodified 1729.8159 0.81589421 1255 P56199 ITGA1 Integrin alpha-1 yes yes 0 0 0 1 By MS/MS By matching 3.67 0.471 1 2 2 1 46.616 46.71 3 1.8789E-06 13046 20211116_3431_TMUAki_TMT10x_P_F4 91.657 71.647 1783300 2864600 0 3095200 3751100 4163700 2454500 2333300 2031800 1846400 2378200 1660100 2673800 136270 3157300 3561600 4134600 2544500 2450100 2097800 1823300 2283500 1 1 0 1 1 1 1 1 1 1 1 1783300 2864600 0 3095200 3751100 4163700 2454500 2333300 2031800 1846400 2378200 1660100 2673800 136270 3157300 3561600 4134600 2544500 2450100 2097800 1823300 2283500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 298430000 211360000 87070000 17293 1255 15886 87892;87893;87894 106327;106328 106328 2 SKEELHQDCLVLATAK Unmodified 1840.9353 0.93529784 2287 Q8TEQ6 GEMIN5 Gem-associated protein 5 yes yes 0 0 0 1 By MS/MS 6 0 1 1 45.182 45.347 4 3.6605E-07 11929 20211116_3445_TMUAki_TMT10x_S_F6 105.31 86.481 924310 1800900 0 2049800 1000700 781710 755470 2203700 1769700 1346900 1662200 860610 1681300 76282 2054600 953240 906530 810530 2143200 1752200 1350800 1606800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 924310 1800900 0 2049800 1000700 781710 755470 2203700 1769700 1346900 1662200 860610 1681300 76282 2054600 953240 906530 810530 2143200 1752200 1350800 1606800 1 1 0 1 1 1 1 1 1 1 1 238000000 0 238000000 17294 2287 15887 87895 106329 106329 1 SKEGDVEEPTDDSLPTTGDAGGREPMEEK Oxidation (M) 3091.3412 0.34116206 3159 Q9UKN8 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 0 0 1 2 By MS/MS 1 0 1 1 38.761 38.761 4 0.0023836 9550 20211116_3428_TMUAki_TMT10x_P_F1 51.025 44.73 263950 343540 13250 641560 1405500 1243600 575830 616600 926060 320500 535640 245870 321670 50220 642450 1327600 1215600 638320 649700 912930 325210 528790 1 1 1 1 1 1 1 1 1 1 1 263950 343540 13250 641560 1405500 1243600 575830 616600 926060 320500 535640 245870 321670 50220 642450 1327600 1215600 638320 649700 912930 325210 528790 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 41957000 41957000 0 17295 3159 15888 87896 106330 106330 3170 1 SKEPDGDRVVYTGTYDTEGVTPTK Unmodified 2614.2399 0.23985552 2456 Q96F85-2;Q96F85 CNRIP1 CB1 cannabinoid receptor-interacting protein 1 yes no 0 0 0 2 By MS/MS By MS/MS 5 0 2 1 1 43.06 43.178 4 6.0465E-48 11881 20211116_3433_TMUAki_TMT10x_P_F5 207.24 194.31 4335000 6586700 65759 9767600 10303000 10370000 6152600 7029800 7842900 5517900 6581700 4036800 6158000 504280 9748900 9778900 10452000 6510200 7270700 7860100 5451300 6388100 4 4 4 4 4 4 4 4 4 4 4 3215800 4792000 50101 6932400 9480300 9693000 5626100 4989200 5654500 4127600 4633000 2994600 4479400 401040 6962300 8996300 9598600 5909200 5284300 5715000 4066700 4500900 3 3 3 3 3 3 3 3 3 3 3 1119200 1794800 15657 2835100 822990 676620 526530 2040600 2188400 1390300 1948700 1042200 1678600 103240 2786500 782620 853090 601030 1986400 2145100 1384600 1887300 1 1 1 1 1 1 1 1 1 1 1 529210000 325330000 203880000 17296 2456 15889 87897;87898 106331;106332;106333;106334 106332 4 SKESVPEFPLSPPK Unmodified 1540.8137 0.81370936 698 P16949;P16949-2 STMN1 Stathmin yes no 0 0 0 1 By MS/MS By MS/MS 7 0.707 2 4 2 5 3 53.752 54.087 3;4 9.4057E-05 15070 20211116_3434_TMUAki_TMT10x_P_F6 93.106 70.304 36620000 61474000 545770 62904000 57692000 85442000 48676000 139790000 84224000 74691000 70388000 34100000 57367000 3735400 64408000 55117000 86874000 50946000 137430000 83637000 75629000 68329000 15 15 13 15 15 15 15 15 15 15 15 15930000 26540000 282500 27421000 34007000 62381000 27830000 72839000 42556000 37289000 33536000 14834000 24768000 1777100 28435000 32465000 61629000 29008000 72465000 42329000 37883000 32630000 8 8 7 8 8 8 8 8 8 8 8 20689000 34934000 263270 35482000 23685000 23061000 20846000 66948000 41668000 37402000 36852000 19265000 32599000 1958300 35973000 22652000 25245000 21938000 64969000 41308000 37746000 35699000 7 7 6 7 7 7 7 7 7 7 7 8009900000 4696000000 3313900000 17297 698 15890 87899;87900;87901;87902;87903;87904;87905;87906 106335;106336;106337;106338;106339;106340;106341;106342;106343;106344;106345;106346;106347;106348;106349 106336 15 SKFDEMAK Unmodified 954.44807 0.44806757 182 O15347 HMGB3 High mobility group protein B3 yes yes 0 0 0 1 By MS/MS 6 0 1 1 37.325 37.488 3 0.089111 8817 20211116_3445_TMUAki_TMT10x_S_F6 46.001 3.6529 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17298 182 15891 87907 106350 106350 1 SKFDNLYGCR Unmodified 1258.5765 0.57645598 786 P23526;P23526-2 AHCY Adenosylhomocysteinase yes no 0 0 0 1 By MS/MS By MS/MS 5.71 3.01 2 2 3 4 3 40.795 41.011 2;3 1.9125E-08 10546 20211116_3436_TMUAki_TMT10x_P_F8 140.07 122.75 24420000 38009000 210860 51799000 66512000 44912000 33334000 28675000 28731000 20066000 35489000 22738000 35518000 2642100 51767000 62943000 45813000 35405000 29716000 29670000 19952000 34025000 7 7 3 7 7 7 7 7 7 7 7 16455000 25487000 206030 33098000 61527000 41130000 28799000 18141000 18161000 12912000 22953000 15322000 23811000 2042100 33348000 58175000 40888000 30594000 19448000 19111000 12826000 21993000 4 4 2 4 4 4 4 4 4 4 4 7964800 12522000 4833.8 18701000 4985600 3782100 4535100 10534000 10571000 7154300 12536000 7415900 11707000 600020 18419000 4767900 4924900 4810500 10268000 10559000 7126500 12032000 3 3 1 3 3 3 3 3 3 3 3 2461300000 1730000000 731270000 17299 786 15892 87908;87909;87910;87911;87912;87913;87914 106351;106352;106353;106354;106355;106356;106357;106358 106355 8 SKFEDMAK Oxidation (M) 970.44298 0.44298219 817 P26583 HMGB2 High mobility group protein B2 yes yes 0 0 1 1 By MS/MS 4.5 0.5 1 1 2 32.728 32.711 3 0.064571 7767 20211116_3433_TMUAki_TMT10x_P_F5 46.335 7.0308 3063100 4786900 58365 4044200 5000900 6056700 3664100 3159700 3385700 3177300 3868100 2852500 4463900 335490 4208300 4765000 5980900 3778000 3359300 3473700 3102400 3716500 2 2 2 2 2 2 2 2 2 2 2 3063100 4786900 58365 4044200 5000900 6056700 3664100 3159700 3385700 3177300 3868100 2852500 4463900 335490 4208300 4765000 5980900 3778000 3359300 3473700 3102400 3716500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 136110000 136110000 0 17300 817 15893 87915;87916 106359;106360 106360 971 2 SKFENEEFFR Unmodified 1331.6146 0.61461563 1671 Q13951-2;Q13951 CBFB Core-binding factor subunit beta yes no 0 0 0 1 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 47.51 47.661 3 1.3521E-05 12862 20211116_3445_TMUAki_TMT10x_S_F6 137.16 119.56 34565000 57347000 336770 64332000 63265000 67652000 41402000 59312000 60056000 50574000 54736000 32186000 53537000 3531600 65185000 60129000 68527000 43717000 60464000 60091000 49753000 52966000 9 9 6 9 9 9 9 9 9 9 9 19528000 32692000 99771 36670000 50415000 55248000 31183000 34121000 34202000 29019000 30787000 18183000 30520000 2113100 37406000 47861000 54662000 32729000 35605000 34541000 28552000 29804000 5 5 4 5 5 5 5 5 5 5 5 15038000 24655000 237000 27662000 12850000 12404000 10219000 25191000 25854000 21555000 23949000 14003000 23017000 1418500 27779000 12268000 13865000 10987000 24859000 25550000 21202000 23162000 4 4 2 4 4 4 4 4 4 4 4 3160800000 1977500000 1183400000 17301 1671 15894 87917;87918;87919;87920;87921;87922 106361;106362;106363;106364;106365;106366;106367;106368;106369 106369 9 SKFVLVK Unmodified 819.52182 0.52182486 858 P30040 ERP29 Endoplasmic reticulum resident protein 29 yes yes 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 45.936 45.931 3 0.010838 12680 20211116_3431_TMUAki_TMT10x_P_F4 80.438 33.371 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17302 858 15895 87923;87924;87925 106370;106371;106372 106370 3 SKGAVAIADAIR Unmodified 1170.6721 0.67207093 1040 P46060 RANGAP1 Ran GTPase-activating protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 41.711 41.926 3 0.0015441 10320 20211116_3447_TMUAki_TMT10x_S_F8 68.283 42.847 681930 1171000 4996.6 1105100 1771600 1938100 1156800 1465200 1406100 1161000 1231800 634980 1092400 76454 1144500 1683500 1912400 1213300 1504400 1413400 1146400 1193700 1 1 1 1 1 1 1 1 1 1 1 681930 1171000 4996.6 1105100 1771600 1938100 1156800 1465200 1406100 1161000 1231800 634980 1092400 76454 1144500 1683500 1912400 1213300 1504400 1413400 1146400 1193700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 58285000 58285000 0 17303 1040 15896 87926;87927 106373;106374 106374 2 SKGCGVVKFESPEVAER Unmodified 1877.9305 0.93054681 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 2 By MS/MS 6 0 1 1 38.249 38.255 4 2.451E-07 8535 20211116_3434_TMUAki_TMT10x_P_F6 106.42 79.946 194550 356820 2341.1 265440 587310 740250 374700 554590 622480 436620 397270 181170 332610 23812 284350 557940 720660 398870 569710 614440 431280 390200 1 1 1 1 1 1 1 1 1 1 1 194550 356820 2341.1 265440 587310 740250 374700 554590 622480 436620 397270 181170 332610 23812 284350 557940 720660 398870 569710 614440 431280 390200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 89665000 89665000 0 17304 1171 15897 87928 106375 106375 1 SKGESDDFHMDFDSAVAPR Oxidation (M) 2125.9011 0.90109718 625 P11388;P11388-2;P11388-3;P11388-4 TOP2A DNA topoisomerase 2-alpha yes no 0 0 1 1 By MS/MS By MS/MS 4 0 2 1 1 39.963 40.085 4 0.00022642 10175 20211116_3442_TMUAki_TMT10x_S_F4 65.954 49.648 2842000 4609300 62046 5633700 8112500 7282200 4390500 5855200 6451100 5008300 5402900 2646700 4304800 367270 5699600 7688900 7284900 4711900 5999800 6435500 4926200 5244400 5 5 5 5 5 5 5 5 5 5 5 1806200 2860800 40220 3536200 7229800 6423900 3593400 4533000 4870200 3676700 3700000 1682100 2671900 263190 3603000 6843300 6323600 3874600 4678700 4857200 3626100 3605400 1 1 1 1 1 1 1 1 1 1 1 1035800 1748500 21826 2097500 882690 858350 797160 1322100 1580900 1331600 1703000 964630 1632900 104070 2096600 845540 961290 837320 1321100 1578300 1300100 1639000 4 4 4 4 4 4 4 4 4 4 4 522070000 484020000 38043000 17305 625 15898 87929;87930 106376;106377;106378;106379;106380 106378 646 5 SKGFGFVCFSSPEEATK Unmodified 1876.8665 0.86654957 634;1619 P11940;P11940-2;Q9H361;Q13310;Q13310-2;Q13310-3 PABPC1;PABPC3;PABPC4 Polyadenylate-binding protein 1;Polyadenylate-binding protein 3;Polyadenylate-binding protein 4 no no 0 0 0 1 By MS/MS By matching 7 0 2 1 1 59.139 59.763 3 0.00039868 19240 20211116_3435_TMUAki_TMT10x_P_F7 70.837 47.038 10745000 19900000 191380 14611000 17990000 35915000 18643000 26983000 19897000 21859000 19152000 10006000 18549000 1170700 15598000 17278000 35073000 18915000 27732000 20161000 21560000 18498000 2 2 2 2 2 2 2 2 2 2 2 10745000 19900000 191380 14611000 17990000 35915000 18643000 26983000 19897000 21859000 19152000 10006000 18549000 1170700 15598000 17278000 35073000 18915000 27732000 20161000 21560000 18498000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1400300000 832540000 567710000 17306 634;1619 15899 87931;87932 106381;106382 106381 2 SKGFGFVSFER Unmodified 1259.6299 0.62987176 634 P11940;P11940-2;Q9H361 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 53.288 53.071 3 0.026293 16848 20211116_3429_TMUAki_TMT10x_P_F2 54.95 39.06 8203100 14867000 113460 11844000 15428000 22652000 12879000 18820000 20631000 18794000 15080000 7638700 13861000 887020 12458000 14736000 22323000 13437000 19328000 20452000 18356000 14719000 3 3 3 3 3 3 3 3 3 3 3 4616900 8449800 11801 5978800 11003000 18856000 9517200 12730000 14300000 12867000 9486900 4298800 7875300 483210 6466500 10513000 18277000 9879500 13256000 14168000 12561000 9300700 2 2 2 2 2 2 2 2 2 2 2 3586200 6416900 101660 5864900 4425100 3795700 3361600 6090900 6330900 5927200 5592600 3339900 5985500 403810 5991200 4222400 4046000 3557400 6072100 6284500 5795600 5417800 1 1 1 1 1 1 1 1 1 1 1 401120000 210610000 190520000 17307 634 15900 87933;87934 106383;106384 106383 2 SKGGVVGIK Unmodified 843.5178 0.51780212 482 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 34.745 34.668 3 0.00011442 9796 20211116_3439_TMUAki_TMT10x_S_F1 96.171 56.17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17308 482 15901 87935;87936;87937 106385;106386;106387 106387 3 SKGGVVGIKVDK Unmodified 1185.7081 0.70812208 482 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 2 By MS/MS By MS/MS 1.7 0.64 4 5 1 4 6 36.207 36.135 3;4 4.4413E-07 8633 20211116_3440_TMUAki_TMT10x_S_F2 126.48 98.623 40031000 64170000 794610 56174000 42200000 52276000 43363000 34861000 41285000 31265000 41523000 37276000 59848000 3746200 57813000 40519000 53105000 43859000 36215000 42099000 30683000 40048000 10 10 8 10 10 10 10 10 10 10 10 25962000 41569000 414980 36106000 25214000 39310000 28012000 22055000 26535000 19495000 26098000 24173000 38768000 2185100 37268000 24249000 39461000 28222000 23218000 27044000 19146000 25189000 3 3 1 3 3 3 3 3 3 3 3 14069000 22601000 379620 20068000 16986000 12966000 15351000 12806000 14749000 11770000 15425000 13103000 21080000 1561100 20545000 16269000 13643000 15638000 12998000 15055000 11538000 14859000 7 7 7 7 7 7 7 7 7 7 7 4366300000 2886500000 1479800000 17309 482 15902 87938;87939;87940;87941;87942;87943;87944;87945;87946;87947 106388;106389;106390;106391;106392;106393;106394;106395;106396;106397;106398 106396 11 SKGIAYIEFK Unmodified 1154.6336 0.63356015 729 P19338 NCL Nucleolin yes yes 0 0 0 1 By MS/MS By MS/MS 3 2.92 2 1 1 1 3 53.415 53.277 3 0.00034944 15285 20211116_3428_TMUAki_TMT10x_P_F1 101.53 47.128 22192000 46286000 254210 22513000 59893000 88508000 43675000 92050000 75488000 75803000 55504000 20665000 43101000 2604800 25633000 57036000 86175000 46135000 92925000 74695000 74703000 54161000 6 6 6 6 6 6 6 6 6 6 6 11827000 24896000 5957.5 9996400 43823000 68723000 30939000 54409000 39357000 43684000 30545000 11013000 23175000 1434300 12129000 41696000 66067000 32317000 55721000 39358000 43106000 29738000 2 2 2 2 2 2 2 2 2 2 2 10364000 21391000 248250 12516000 16070000 19785000 12736000 37641000 36130000 32119000 24959000 9651900 19926000 1170500 13504000 15340000 20108000 13817000 37204000 35336000 31597000 24423000 4 4 4 4 4 4 4 4 4 4 4 2782900000 1404500000 1378400000 17310 729 15903 87948;87949;87950;87951 106399;106400;106401;106402;106403;106404 106399 6 SKGIAYIEFKTEADAEK Unmodified 1898.9626 0.96255845 729 P19338 NCL Nucleolin yes yes 0 0 0 2 By MS/MS 7 0 1 1 54.157 54.878 4 1.0474E-10 17294 20211116_3435_TMUAki_TMT10x_P_F7 129.15 109.76 4933700 9382100 160900 5402400 10190000 17315000 8894500 12220000 12076000 10298000 8804500 4595000 8739600 632610 5970600 9747800 16790000 9188300 12624000 12030000 10137000 8594700 1 1 1 1 1 1 1 1 1 1 1 4933700 9382100 160900 5402400 10190000 17315000 8894500 12220000 12076000 10298000 8804500 4595000 8739600 632610 5970600 9747800 16790000 9188300 12624000 12030000 10137000 8594700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 826540000 826540000 0 17311 729 15904 87952 106405 106405 1 SKGPAVGIDLGTTYSCVGVFQHGK Acetyl (Protein N-term) 2519.2479 0.2478582 615 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 1 0 0 1 By MS/MS By MS/MS 5 3.46 3 4 4 3 65.694 65.689 3;4 9.3538E-38 20517 20211116_3436_TMUAki_TMT10x_P_F8 63.165 47.744 23663000 44386000 613250 25694000 35739000 71547000 37280000 64856000 54478000 53727000 44924000 22037000 41347000 1925100 28218000 34341000 69908000 38266000 65945000 54330000 52931000 43633000 8 8 5 8 8 8 8 8 8 8 8 16457000 30097000 455780 16460000 20562000 58080000 28067000 47493000 40414000 39057000 31187000 15326000 28033000 1381500 18378000 19929000 56363000 28459000 48569000 40247000 38493000 30371000 5 5 3 5 5 5 5 5 5 5 5 7206600 14289000 157470 9234200 15178000 13467000 9213100 17363000 14063000 14670000 13737000 6711200 13315000 543570 9840800 14413000 13545000 9807300 17376000 14083000 14438000 13262000 3 3 2 3 3 3 3 3 3 3 3 12341000000 7011400000 5329400000 17312 615 15905 87953;87954;87955;87956;87957;87958;87959 106406;106407;106408;106409;106410;106411;106412;106413 106410 8 SKGQESFK Unmodified 909.4556 0.45559579 524 P06748;P06748-3 NPM1 Nucleophosmin yes no 0 0 0 1 By MS/MS 5 0 1 1 31.252 31.188 3 0.014329 7195 20211116_3433_TMUAki_TMT10x_P_F5 65.157 34.654 433470 672130 0 597930 646080 1045100 540280 879640 654810 562070 725830 403470 626890 21435 621920 615690 1033400 557110 893200 663660 562030 697980 1 1 0 1 1 1 1 1 1 1 1 433470 672130 0 597930 646080 1045100 540280 879640 654810 562070 725830 403470 626890 21435 621920 615690 1033400 557110 893200 663660 562030 697980 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18209000 18209000 0 17313 524 15906 87960 106414 106414 1 SKGYAFIEFASFEDAK Unmodified 1808.8621 0.86211612 729 P19338 NCL Nucleolin yes yes 0 0 0 1 By MS/MS By MS/MS 6.75 0.433 1 3 3 1 71.889 72.186 3;4 3.2002E-07 24962 20211116_3446_TMUAki_TMT10x_S_F7 104.61 88.486 13361000 25341000 39297 16758000 20174000 51762000 24156000 41534000 44242000 45034000 30095000 12440000 23613000 1159100 18226000 19441000 50343000 24916000 42850000 43628000 43838000 29470000 4 4 2 4 4 4 4 4 4 4 4 10667000 19909000 13231 13418000 15685000 45419000 19993000 32639000 34562000 35222000 23723000 9931600 18553000 886350 14626000 15144000 44009000 20505000 33907000 34139000 34293000 23220000 3 3 1 3 3 3 3 3 3 3 3 2693600 5431300 26066 3339900 4488400 6342500 4163400 8894600 9679900 9811600 6372400 2508200 5060200 272750 3599900 4297100 6333500 4410800 8942100 9488900 9544700 6249600 1 1 1 1 1 1 1 1 1 1 1 2745800000 1873900000 871950000 17314 729 15907 87961;87962;87963;87964 106415;106416;106417;106418;106419 106419 5 SKIEDYFPEFAR Unmodified 1500.7249 0.72489436 1393 P63092;Q5JWF2;P63092-4;Q5JWF2-2;P63092-3;P63092-2 GNAS Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas yes no 0 0 0 1 By MS/MS By MS/MS 6.71 1.03 1 2 2 2 4 3 64.707 64.894 3 6.235E-09 19566 20211116_3434_TMUAki_TMT10x_P_F6 145.43 122.89 81751000 132720000 498670 131930000 118970000 145080000 108030000 110540000 107090000 106050000 115160000 76115000 123840000 6996800 134850000 113780000 146210000 110120000 114000000 109280000 103760000 110840000 11 11 5 11 11 11 11 11 11 11 11 46552000 74124000 48882 74824000 59083000 96661000 58774000 62764000 59910000 60373000 63166000 43342000 69168000 3781800 76610000 56627000 96363000 59668000 65453000 61014000 59062000 60833000 6 6 1 6 6 6 6 6 6 6 6 35199000 58600000 449790 57110000 59884000 48417000 49257000 47775000 47182000 45679000 51995000 32773000 54674000 3215000 58237000 57149000 49846000 50455000 48544000 48261000 44699000 50008000 5 5 4 5 5 5 5 5 5 5 5 7778800000 4112600000 3666300000 17315 1393 15908 87965;87966;87967;87968;87969;87970;87971 106420;106421;106422;106423;106424;106425;106426;106427;106428;106429;106430 106422 11 SKIETEIK Unmodified 946.53351 0.53351176 2855 Q9HB71;Q9HB71-2 CACYBP Calcyclin-binding protein yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 36.326 36.326 3 0.011296 9212 20211116_3433_TMUAki_TMT10x_P_F5 70.977 36.599 5729800 9012300 126300 8201600 7249600 8649600 5977100 4499700 5084900 4663700 6681400 5335900 8406400 602250 8430900 6926100 8690800 6101700 4789400 5268700 4548000 6395800 2 2 1 2 2 2 2 2 2 2 2 5729800 9012300 126300 8201600 7249600 8649600 5977100 4499700 5084900 4663700 6681400 5335900 8406400 602250 8430900 6926100 8690800 6101700 4789400 5268700 4548000 6395800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 333720000 333720000 0 17316 2855 15909 87972;87973;87974 106431;106432;106433 106432 3 SKINVNEIFYDLVR Unmodified 1708.9148 0.91482039 1304 P61224;P61224-2;P61224-3;P62834;A6NIZ1;P61224-4 RAP1B;RAP1A Ras-related protein Rap-1b;Ras-related protein Rap-1A;Ras-related protein Rap-1b-like protein yes no 0 0 0 1 By MS/MS By MS/MS 4.29 3.24 2 2 3 4 3 77.72 77.69 3 2.6323E-24 25534 20211116_3440_TMUAki_TMT10x_S_F2 197.47 170.5 39679000 67752000 519480 52447000 47192000 66229000 54131000 49514000 47047000 52639000 54128000 36949000 63162000 3851000 54792000 45454000 66244000 54325000 51280000 48423000 51282000 51996000 7 7 6 7 7 7 7 7 7 7 7 18217000 28827000 242410 22031000 18338000 37514000 24295000 21571000 20266000 22608000 23657000 16963000 26874000 1709800 23187000 17746000 36903000 24207000 22768000 20914000 22038000 22716000 4 4 3 4 4 4 4 4 4 4 4 21463000 38924000 277080 30416000 28854000 28716000 29836000 27943000 26781000 30031000 30471000 19986000 36289000 2141100 31605000 27708000 29341000 30118000 28512000 27509000 29244000 29280000 3 3 3 3 3 3 3 3 3 3 3 7635100000 4601700000 3033300000 17317 1304 15910 87975;87976;87977;87978;87979;87980;87981 106434;106435;106436;106437;106438;106439;106440;106441 106440 8 SKITVTSEVPFSK Unmodified 1421.7766 0.77659558 931 P35268 RPL22 60S ribosomal protein L22 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 51.355 51.231 3 2.5181E-06 14657 20211116_3436_TMUAki_TMT10x_P_F8 103.39 81.514 15342000 23618000 148340 29454000 16865000 15572000 14503000 11844000 14153000 13863000 17215000 14286000 22060000 1398700 29428000 16118000 16636000 14823000 12290000 14522000 13456000 16512000 3 3 2 3 3 3 3 3 3 3 3 5836300 9029400 67220 10743000 9873300 8866900 6817800 4351600 5390800 5387300 6548800 5434600 8431800 603050 10810000 9394200 9047200 7031100 4683300 5587700 5218800 6281500 1 1 1 1 1 1 1 1 1 1 1 9506000 14589000 81117 18711000 6991500 6705400 7685000 7492000 8762200 8476000 10666000 8851400 13629000 795620 18618000 6724000 7589200 7792300 7607100 8934500 8237500 10230000 2 2 1 2 2 2 2 2 2 2 2 1735500000 671060000 1064400000 17318 931 15911 87982;87983;87984;87985 106442;106443;106444;106445 106443 4 SKITVTSEVPFSKR Unmodified 1577.8777 0.8777066 931 P35268 RPL22 60S ribosomal protein L22 yes yes 0 0 0 2 By MS/MS By MS/MS 2.71 0.881 1 1 4 1 3 4 43.176 43.059 3;4 7.4412E-10 12877 20211116_3429_TMUAki_TMT10x_P_F2 139 115.4 12578000 18914000 64723 19899000 16154000 14893000 11560000 12944000 15485000 12315000 14833000 11712000 17653000 1107700 20156000 15374000 15437000 12087000 13240000 15559000 12054000 14329000 9 9 4 9 9 9 9 9 9 9 9 6096400 9005600 19525 9367500 10441000 9860900 6047100 5863900 7331400 5658600 6707400 5676300 8404500 561820 9538200 9900700 9925400 6403400 6157500 7380100 5535000 6489700 4 4 1 4 4 4 4 4 4 4 4 6481700 9908800 45198 10531000 5712400 5031700 5512600 7080200 8153800 6656700 8125700 6035300 9248300 545890 10617000 5473600 5511200 5683900 7082600 8178500 6518700 7839400 5 5 3 5 5 5 5 5 5 5 5 2117800000 1061200000 1056500000 17319 931 15912 87986;87987;87988;87989;87990;87991;87992 106446;106447;106448;106449;106450;106451;106452;106453;106454 106446 9 SKKVEEAEPEEFVVEK Unmodified 1875.9466 0.94657403 1607 Q13185 CBX3 Chromobox protein homolog 3 yes yes 0 0 0 2 By MS/MS By matching 4 0.816 1 1 1 2 1 46.415 46.511 4 7.5214E-06 12912 20211116_3431_TMUAki_TMT10x_P_F4 100.53 84.583 3956100 6546300 19063 5906300 14395000 15153000 7517400 9277500 10276000 6296300 7259000 3683500 6106000 472740 6208900 13630000 14734000 8070200 9640000 10227000 6272100 7095900 2 2 1 2 2 2 2 2 2 2 2 3956100 6546300 19063 5906300 14395000 15153000 7517400 9277500 10276000 6296300 7259000 3683500 6106000 472740 6208900 13630000 14734000 8070200 9640000 10227000 6272100 7095900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1416900000 888950000 527930000 17320 1607 15913 87993;87994;87995 106455;106456 106456 2 SKLDWESFKEEEGIGEELAIHNR Unmodified 2715.314 0.31402351 3100 Q9UEE9 CFDP1 Craniofacial development protein 1 yes yes 0 0 0 2 By MS/MS 4 0 1 1 64.807 64.907 5 3.9249E-11 20489 20211116_3431_TMUAki_TMT10x_P_F4 113.42 99.693 5120000 8580600 66559 8614400 4887800 8050900 5742900 3596300 3041800 3750400 4850900 4767700 8006700 483260 8777300 4712100 8136400 5697000 3885900 3276900 3656500 4623500 1 1 1 1 1 1 1 1 1 1 1 5120000 8580600 66559 8614400 4887800 8050900 5742900 3596300 3041800 3750400 4850900 4767700 8006700 483260 8777300 4712100 8136400 5697000 3885900 3276900 3656500 4623500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 921240000 921240000 0 17321 3100 15914 87996 106457 106457 1 SKLEDIANAALAASAVTQVAK Unmodified 2070.1321 0.13208339 2309 Q8WVM8;Q8WVM8-2;Q8WVM8-3 SCFD1 Sec1 family domain-containing protein 1 yes no 0 0 0 1 By MS/MS 3 0 1 1 78.13 78.051 3 1.2267E-07 28454 20211116_3441_TMUAki_TMT10x_S_F3 96.848 78.931 3148700 5436900 110920 5614100 3859400 2919400 3920000 2780900 2935800 3355000 3724600 2932600 5073900 374380 5674500 3708800 3137200 3942600 2851600 3057700 3253000 3568600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3148700 5436900 110920 5614100 3859400 2919400 3920000 2780900 2935800 3355000 3724600 2932600 5073900 374380 5674500 3708800 3137200 3942600 2851600 3057700 3253000 3568600 1 1 1 1 1 1 1 1 1 1 1 840300000 0 840300000 17322 2309 15915 87997 106458 106458 1 SKLESELANFGPR Unmodified 1446.7467 0.74669243 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 1 By MS/MS By MS/MS 6.71 1.03 1 2 2 2 4 3 55.653 55.902 3 3.5802E-19 17607 20211116_3435_TMUAki_TMT10x_P_F7 186.69 159.28 106450000 177910000 602360 180450000 136610000 157010000 111430000 140240000 135660000 127230000 140550000 99120000 166020000 9377800 183560000 130370000 161020000 115100000 143040000 137130000 124800000 135430000 12 12 7 12 12 12 12 12 12 12 12 44814000 71032000 347960 73814000 66808000 99626000 58039000 58509000 55572000 54492000 58580000 41728000 66291000 4311000 75492000 63857000 98976000 59253000 61442000 56750000 53385000 56416000 5 5 4 5 5 5 5 5 5 5 5 61640000 106880000 254400 106630000 69806000 57382000 53391000 81728000 80090000 72741000 81967000 57392000 99732000 5066900 108070000 66510000 62042000 55842000 81598000 80376000 71412000 79013000 7 7 3 7 7 7 7 7 7 7 7 7416100000 3638700000 3777300000 17323 1723 15916 87998;87999;88000;88001;88002;88003;88004 106459;106460;106461;106462;106463;106464;106465;106466;106467;106468;106469;106470;106471 106462 13 SKLIAGK Unmodified 715.45922 0.4592246 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 1 By MS/MS 2 0 1 1 34.978 34.753 3 0.028262 9406 20211116_3429_TMUAki_TMT10x_P_F2 64.42 64.42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17324 769 15917 88005 106472 106472 1 SKLILFPR Unmodified 972.61204 0.61203685 813 P26373 RPL13 60S ribosomal protein L13 yes yes 0 0 0 1 By MS/MS 5 0 1 1 50.789 50.986 3 0.019008 15041 20211116_3433_TMUAki_TMT10x_P_F5 64.841 43.313 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17325 813 15918 88006 106473 106473 1 SKLPKPVQDLIK Unmodified 1364.8391 0.83913625 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 2 By MS/MS By MS/MS 2.4 0.8 1 1 3 3 2 51.791 51.633 3;4 2.9407E-07 16699 20211116_3430_TMUAki_TMT10x_P_F3 131.53 95.142 14827000 25600000 123390 32151000 30601000 30184000 18538000 28592000 25630000 23000000 23914000 13806000 23912000 1541500 32307000 29044000 30835000 19654000 28984000 25703000 22693000 23122000 5 5 3 5 5 5 5 5 5 5 5 7580000 13377000 25547 17296000 25863000 24100000 13119000 15036000 15043000 11866000 12788000 7057800 12497000 884670 17470000 24479000 23928000 14033000 15650000 15140000 11719000 12406000 3 3 1 3 3 3 3 3 3 3 3 7246700 12223000 97840 14855000 4737500 6084700 5419600 13556000 10587000 11134000 11126000 6748100 11415000 656840 14837000 4565600 6907500 5621700 13334000 10563000 10974000 10716000 2 2 2 2 2 2 2 2 2 2 2 2532400000 1247200000 1285200000 17326 586 15919 88007;88008;88009;88010;88011 106474;106475;106476;106477;106478 106476 5 SKLSEIVR Unmodified 930.54983 0.54983053 260;844 P28370-2;P28370;O60264 SMARCA1;SMARCA5 Probable global transcription activator SNF2L1;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 no no 0 0 0 1 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 36.018 36.336 3 0.011575 8011 20211116_3447_TMUAki_TMT10x_S_F8 70.441 35.617 1079600 1687200 25611 1615200 1630700 1443200 1100400 1156300 1105800 1084700 1341000 1005400 1574100 121100 1650300 1551800 1474400 1144100 1188000 1133100 1062400 1286300 4 4 4 4 4 4 4 4 4 4 4 580470 827000 16812 817450 1061600 1017800 594510 562930 552520 551630 658580 540600 771640 70532 837610 1007200 1014200 626160 594960 567690 539220 632030 2 2 2 2 2 2 2 2 2 2 2 499150 860240 8798.6 797770 569120 425500 505920 593400 553270 533110 682400 464830 802460 50563 812700 544650 460200 517940 593050 565370 523150 654290 2 2 2 2 2 2 2 2 2 2 2 65305000 35370000 29935000 17327 844;260 15920 88012;88013;88014;88015 106479;106480;106481 106481 3 SKLTFSCLGGSDNFK Unmodified 1659.7927 0.79265635 1778 Q15185;Q15185-3;Q15185-4;Q15185-2 PTGES3 Prostaglandin E synthase 3 yes no 0 0 0 1 By MS/MS By MS/MS 2.69 2.33 4 6 1 2 6 7 56.463 56.286 2;3;4 1.1376E-41 18145 20211116_3429_TMUAki_TMT10x_P_F2 263.9 240.05 198240000 330540000 2642200 368800000 304360000 325900000 208470000 245570000 237280000 230140000 267840000 184590000 308570000 19757000 372890000 289550000 332840000 217370000 253270000 241220000 225400000 257430000 24 24 16 24 24 24 24 24 24 24 24 102140000 168920000 1650400 186270000 205680000 253720000 142580000 127610000 124180000 119310000 136230000 95114000 157680000 11251000 189810000 195710000 251480000 147360000 135860000 127560000 116870000 131040000 12 12 8 12 12 12 12 12 12 12 12 96095000 161620000 991770 182530000 98688000 72180000 65887000 117960000 113100000 110820000 131610000 89478000 150890000 8505200 183080000 93835000 81367000 70009000 117410000 113650000 108530000 126380000 12 12 8 12 12 12 12 12 12 12 12 37610000000 22184000000 15426000000 17328 1778 15921 88016;88017;88018;88019;88020;88021;88022;88023;88024;88025;88026;88027;88028 106482;106483;106484;106485;106486;106487;106488;106489;106490;106491;106492;106493;106494;106495;106496;106497;106498;106499;106500;106501;106502;106503;106504;106505 106490 24 SKNILFVITKPDVYK Unmodified 1764.0186 0.018557183 59 E9PAV3;Q13765;E9PAV3-2 NACA Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha no no 0 0 0 2 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 64.334 64.346 4 5.533E-19 19350 20211116_3444_TMUAki_TMT10x_S_F5 161.14 144.06 34429000 66577000 442970 39791000 65105000 83790000 50917000 66198000 57602000 61053000 57367000 32059000 62023000 3572400 43144000 62088000 82250000 52596000 68040000 58299000 59840000 55347000 6 6 5 6 6 6 6 6 6 6 6 19702000 36956000 144010 22794000 38630000 62343000 35075000 35595000 33317000 33692000 31697000 18344000 34431000 1908200 24846000 36951000 60471000 35709000 37483000 33914000 32984000 30627000 3 3 2 3 3 3 3 3 3 3 3 14727000 29621000 298960 16997000 26476000 21446000 15842000 30604000 24285000 27361000 25671000 13715000 27592000 1664200 18298000 25137000 21780000 16887000 30556000 24385000 26856000 24721000 3 3 3 3 3 3 3 3 3 3 3 2836300000 959220000 1877100000 17329 59 15922 88029;88030;88031 106506;106507;106508;106509;106510;106511 106510 6 SKPELPPGLSPEATAPVTPSRPEGGEPGLSK Unmodified 3081.5982 0.59824387 2640 Q9BRP8;Q9BRP8-2 WIBG Partner of Y14 and mago yes no 0 0 0 2 By MS/MS By MS/MS 7 0 3 1 2 53.565 54.143 4;5 4.4863E-20 17019 20211116_3435_TMUAki_TMT10x_P_F7 124.9 107.96 12422000 22445000 292280 22602000 15142000 18451000 12475000 18801000 19575000 17568000 18244000 11568000 20944000 1330400 22984000 14469000 19061000 13014000 19061000 19556000 17209000 17641000 5 5 4 5 5 5 5 5 5 5 5 4142800 7481800 53892 7397000 7088700 11007000 6342100 6204300 6387100 5838300 5889500 3857700 6981000 424990 7606200 6780800 10883000 6473500 6539600 6478200 5717000 5696800 2 2 1 2 2 2 2 2 2 2 2 8279000 14963000 238390 15205000 8053500 7443900 6133400 12597000 13188000 11730000 12355000 7710300 13963000 905400 15378000 7688300 8177900 6540200 12522000 13078000 11492000 11944000 3 3 3 3 3 3 3 3 3 3 3 1945600000 802510000 1143100000 17330 2640 15923 88032;88033;88034 106512;106513;106514;106515;106516 106513 5 SKPGAAMVEMADGYAVDR 2 Oxidation (M) 1898.8502 0.85024758 677 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 2 1 By MS/MS By MS/MS 4.73 1.14 2 3 2 4 4 7 35.608 35.654 3 6.674E-06 8092 20211116_3444_TMUAki_TMT10x_S_F5 94.632 80.378 10952000 17657000 58985 21874000 18143000 18511000 11882000 24197000 30842000 17209000 19813000 10197000 16491000 907740 21967000 17233000 19193000 12967000 24105000 30155000 17095000 19454000 17 17 5 17 17 17 17 17 17 17 17 3436600 5418400 51497 6357600 11293000 11575000 5338500 6972500 9352600 5009600 5875600 3200100 5059500 436650 6497500 10682000 11367000 5850700 7262700 9215700 4973500 5775600 6 6 3 6 6 6 6 6 6 6 6 7515500 12238000 7487.7 15516000 6849800 6936000 6543300 17224000 21489000 12200000 13937000 6996600 11432000 471090 15470000 6550900 7826400 7115900 16843000 20939000 12122000 13679000 11 11 2 11 11 11 11 11 11 11 11 4403000000 2958500000 1444500000 17331 677 15924 88035;88036;88037;88038;88039;88040;88041;88042;88043;88044;88045 106517;106518;106519;106520;106521;106522;106523;106524;106525;106526;106527;106528;106529;106530;106531;106532;106533;106534 106529 756;757 18 SKPGAAMVEMADGYAVDR Oxidation (M) 1882.8553 0.85533296 677 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 1 1 By MS/MS By MS/MS 4.71 1.03 2 4 4 4 7 7 43.725 43.813 3 1.2611E-08 11300 20211116_3442_TMUAki_TMT10x_S_F4 118.19 108.09 50904000 83792000 253620 102720000 78399000 70803000 55273000 43310000 35575000 46232000 64984000 47393000 78258000 4132000 102980000 74560000 73480000 56665000 45509000 38097000 45033000 61777000 21 21 7 21 21 21 21 21 21 21 21 27818000 43436000 44644 54143000 58587000 55684000 39954000 22142000 17806000 23767000 34173000 25897000 40570000 2220900 54502000 55674000 55878000 40816000 24254000 19664000 23145000 32458000 11 11 2 11 11 11 11 11 11 11 11 23086000 40357000 208970 48575000 19812000 15119000 15319000 21168000 17769000 22465000 30811000 21496000 37688000 1911100 48474000 18886000 17602000 15849000 21256000 18432000 21887000 29319000 10 10 5 10 10 10 10 10 10 10 10 11349000000 7780200000 3569000000 17332 677 15924 88046;88047;88048;88049;88050;88051;88052;88053;88054;88055;88056;88057;88058;88059 106535;106536;106537;106538;106539;106540;106541;106542;106543;106544;106545;106546;106547;106548;106549;106550;106551;106552;106553;106554;106555 106547 756;757 21 SKPGAAMVEMADGYAVDR Unmodified 1866.8604 0.86041834 677 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 1 By MS/MS By MS/MS 5.5 1.12 2 2 2 2 4 4 53.488 53.74 3 3.4837E-24 14921 20211116_3434_TMUAki_TMT10x_P_F6 177.08 166.22 93807000 148640000 659540 186210000 114310000 89682000 109190000 42751000 37195000 44240000 95302000 87347000 138840000 6866500 185870000 109500000 96262000 108800000 45880000 43052000 43146000 90135000 15 15 8 15 15 15 15 15 15 15 15 49374000 77369000 420470 97249000 71168000 65847000 69284000 23250000 20323000 24075000 50130000 45974000 72267000 4662600 97336000 68209000 68061000 68861000 25813000 23876000 23479000 47436000 9 9 5 9 9 9 9 9 9 9 9 44434000 71270000 239070 88964000 43144000 23835000 39910000 19501000 16872000 20165000 45172000 41373000 66569000 2203900 88534000 41293000 28201000 39938000 20066000 19176000 19667000 42699000 6 6 3 6 6 6 6 6 6 6 6 12789000000 6560300000 6228900000 17333 677 15924 88060;88061;88062;88063;88064;88065;88066;88067 106556;106557;106558;106559;106560;106561;106562;106563;106564;106565;106566;106567;106568;106569;106570 106560 15 SKPHSEAGTAFIQTQQLHAAMADTFLEHMCR Acetyl (Protein N-term) 3554.6493 0.64932671 670;671 P14618;P14618-2 PKM Pyruvate kinase PKM no no 1 0 0 1 By MS/MS By MS/MS 4.4 3.01 1 1 1 2 3 2 64.48 64.356 5 9.4835E-36 19339 20211116_3447_TMUAki_TMT10x_S_F8 48.694 35.704 19519000 31445000 331720 32116000 18265000 19732000 23523000 11829000 6293800 10344000 21525000 18177000 29344000 672270 32531000 17666000 20688000 23052000 12381000 7697200 10163000 20293000 4 4 1 4 4 4 4 4 4 4 4 15305000 21222000 0 22255000 13072000 16473000 18150000 9206200 5979800 8753500 15825000 14251000 19806000 0 22544000 12661000 16974000 17768000 9713400 6965300 8567800 14961000 3 3 0 3 3 3 3 3 3 3 3 4214400 10224000 331720 9861000 5193400 3259400 5373100 2622700 313960 1590200 5699700 3926500 9538300 672270 9986700 5004300 3713400 5284100 2667800 731890 1595600 5331500 1 1 1 1 1 1 1 1 1 1 1 27273000000 17962000000 9310500000 17334 670;671 15925 88068;88069;88070;88071;88072 106571;106572;106573;106574 106574 4 SKPLAASPK Unmodified 897.52837 0.5283668 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 1 By MS/MS 1 0 1 1 32.06 32.09 3 0.034027 8758 20211116_3439_TMUAki_TMT10x_S_F1 59.367 31.625 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17335 1057 15926 88073 106575 106575 1 SKPLAASPKPAGLK Unmodified 1363.8187 0.81873516 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 2 By MS/MS By MS/MS 4 0.816 1 1 1 1 2 37.168 37.147 4 2.6412E-06 9279 20211116_3431_TMUAki_TMT10x_P_F4 114.27 101.29 2785600 4622300 17891 3999700 4855000 5688800 3949700 3293100 4189600 3442300 3873200 2593800 4310700 276600 4149600 4633600 5637300 4061100 3473600 4240400 3355800 3746100 2 2 2 2 2 2 2 2 2 2 2 1955600 3004000 4666 2746200 3655700 4668700 2840700 2069600 2630200 2198900 2545500 1820900 2802100 190290 2848600 3485000 4579200 2917500 2239300 2682000 2142300 2458200 1 1 1 1 1 1 1 1 1 1 1 829960 1618300 13225 1253500 1199300 1020100 1109000 1223500 1559300 1243300 1327600 772870 1508700 86308 1301000 1148500 1058200 1143600 1234300 1558400 1213500 1287900 1 1 1 1 1 1 1 1 1 1 1 417840000 292750000 125100000 17336 1057 15927 88074;88075;88076 106576;106577 106576 2 SKQEALKNDLVEALK Unmodified 1684.9359 0.93594977 1063 P47756-2 CAPZB F-actin-capping protein subunit beta yes yes 0 0 0 2 By MS/MS By MS/MS 7.17 0.687 1 3 2 4 2 60.55 60.914 3;4 5.517E-19 19683 20211116_3435_TMUAki_TMT10x_P_F7 161.19 135.6 90097000 142480000 1071300 147510000 125210000 153960000 101270000 100220000 111230000 102540000 110510000 83897000 132970000 8919500 150220000 119520000 155240000 104280000 104670000 112700000 100050000 106620000 8 8 6 8 8 8 8 8 8 8 8 60713000 94592000 872660 96852000 97617000 128230000 78410000 67390000 74272000 69160000 73181000 56536000 88273000 6356000 99115000 93169000 127330000 80411000 71641000 75701000 67472000 70629000 6 6 5 6 6 6 6 6 6 6 6 29383000 47889000 198610 50654000 27594000 25736000 22856000 32825000 36962000 33382000 37325000 27360000 44696000 2563400 51108000 26349000 27914000 23868000 33033000 36998000 32580000 35995000 2 2 1 2 2 2 2 2 2 2 2 8422900000 5756900000 2666000000 17337 1063 15928 88077;88078;88079;88080;88081;88082 106578;106579;106580;106581;106582;106583;106584;106585 106580 8 SKSEEAHAEDSVMDHHFR Oxidation (M) 2126.9076 0.90757954 2232 Q8NC51;Q8NC51-3;Q8NC51-2;Q8NC51-4 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 0 0 1 1 By MS/MS By matching 3.25 1.39 1 2 1 2 2 7 1 29.197 29.098 4;5;6 5.419E-08 5977 20211116_3431_TMUAki_TMT10x_P_F4 105.79 100.24 750030 1105400 21855 1349400 1801300 1541500 778770 713380 774470 712190 929620 698500 1032400 94718 1362300 1702600 1539900 843270 767080 793590 695610 891960 6 6 5 6 6 6 6 6 6 6 6 750030 1105400 21855 1349400 1801300 1541500 778770 713380 774470 712190 929620 698500 1032400 94718 1362300 1702600 1539900 843270 767080 793590 695610 891960 6 6 5 6 6 6 6 6 6 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 104570000 96044000 8525300 17338 2232 15929 88083;88084;88085;88086;88087;88088;88089;88090 106586;106587;106588;106589;106590;106591 106590 2635 6 SKSEEAHAEDSVMDHHFR Unmodified 2110.9127 0.91266492 2232 Q8NC51;Q8NC51-3;Q8NC51-2;Q8NC51-4 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 0 0 0 1 By MS/MS 4.5 0.5 2 2 4 31.775 31.759 5;6 3.0868E-05 7108 20211116_3431_TMUAki_TMT10x_P_F4 81.878 71.411 1155400 1776000 52008 2394200 2610800 2251400 1487500 919520 904670 954590 1414700 1076200 1659500 164640 2396700 2478200 2272500 1549600 1003200 963950 930850 1348900 2 2 2 2 2 2 2 2 2 2 2 1155400 1776000 52008 2394200 2610800 2251400 1487500 919520 904670 954590 1414700 1076200 1659500 164640 2396700 2478200 2272500 1549600 1003200 963950 930850 1348900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 128110000 128110000 0 17339 2232 15929 88091;88092;88093;88094 106592;106593 106592 2 SKSESPKEPEQLR Acetyl (Protein N-term) 1555.7842 0.78420015 583 P09651;P09651-2;P09651-3 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes no 1 0 0 2 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 32.053 31.808 3 1.4318E-18 7179 20211116_3431_TMUAki_TMT10x_P_F4 62.528 44.611 280510 554010 1981.5 360150 628030 454970 374180 686590 817640 477630 644490 261200 516220 29970 382530 595920 462850 406540 680130 806250 475090 627070 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 280510 554010 1981.5 360150 628030 454970 374180 686590 817640 477630 644490 261200 516220 29970 382530 595920 462850 406540 680130 806250 475090 627070 1 1 1 1 1 1 1 1 1 1 1 27857000 0 27857000 17340 583 15930 88095;88096 106594;106595 106594 2 SKTPEIYLAYR Unmodified 1339.7136 0.71360139 2379;2263 Q8TAQ2;Q8TAQ2-2;Q8TAQ2-3;Q92922 SMARCC2;SMARCC1 SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1 no no 0 0 0 1 By MS/MS By MS/MS 5.43 2.87 2 1 2 2 3 4 46.538 46.685 3 3.5576E-08 14006 20211116_3435_TMUAki_TMT10x_P_F7 142.47 116.43 21159000 33364000 220170 37153000 33490000 35566000 22215000 29674000 29375000 26229000 29438000 19703000 31146000 2101000 37611000 31840000 36198000 23345000 30365000 29572000 25758000 28396000 6 6 4 6 6 6 6 6 6 6 6 10931000 16871000 147500 19213000 23625000 27457000 14028000 15687000 15924000 13917000 15112000 10178000 15752000 1199700 19558000 22419000 27198000 14789000 16490000 16088000 13665000 14603000 3 3 2 3 3 3 3 3 3 3 3 10229000 16492000 72664 17940000 9864500 8109600 8187100 13987000 13451000 12311000 14326000 9524300 15395000 901300 18052000 9420100 9000000 8555200 13874000 13485000 12093000 13793000 3 3 2 3 3 3 3 3 3 3 3 4833400000 3406600000 1426800000 17341 2263;2379 15931 88097;88098;88099;88100;88101;88102;88103 106596;106597;106598;106599;106600;106601 106597 6 SKVDEAVAVLQAHHAK Unmodified 1701.9162 0.91621738 1619 Q13310;Q13310-2;Q13310-3 PABPC4 Polyadenylate-binding protein 4 yes no 0 0 0 1 By MS/MS 7 0 1 1 46.861 47.427 5 0.0010413 14305 20211116_3435_TMUAki_TMT10x_P_F7 64.537 51.556 1595100 1892900 0 2197900 2607900 2630100 1736300 1824200 1564600 1619400 2074000 1485100 1767400 135720 2227100 2477900 2634600 1801400 1889300 1617300 1590000 1984900 1 1 0 1 1 1 1 1 1 1 1 1595100 1892900 0 2197900 2607900 2630100 1736300 1824200 1564600 1619400 2074000 1485100 1767400 135720 2227100 2477900 2634600 1801400 1889300 1617300 1590000 1984900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 375700000 375700000 0 17342 1619 15932 88104 106602 106602 1 SKVDEAVAVLQAHQAK Unmodified 1692.9159 0.91588303 634 P11940;P11940-2;Q9H361 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 53.506 53.438 4 7.8578E-15 17511 20211116_3439_TMUAki_TMT10x_S_F1 143.59 110.28 15564000 25147000 189540 30532000 27848000 28234000 17959000 17694000 16620000 15973000 21605000 14492000 23485000 1581000 30733000 26461000 28668000 18692000 18470000 17143000 15671000 20687000 5 5 4 5 5 5 5 5 5 5 5 10565000 16974000 173890 21067000 24507000 25074000 15258000 12322000 11394000 11236000 14941000 9837900 15854000 1233200 21263000 23277000 25010000 15841000 13139000 11887000 11018000 14303000 3 3 3 3 3 3 3 3 3 3 3 4999100 8173400 15653 9464900 3341100 3160100 2700600 5371900 5225500 4736900 6664200 4654300 7631500 347750 9470200 3184700 3657900 2851000 5331200 5256600 4652500 6384200 2 2 1 2 2 2 2 2 2 2 2 2250700000 1510400000 740260000 17343 634 15933 88105;88106;88107;88108 106603;106604;106605;106606;106607 106606 5 SKVPAFVR Unmodified 902.53379 0.53378653 1084 P48739;P48739-2;P48739-3 PITPNB Phosphatidylinositol transfer protein beta isoform yes no 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 36.945 36.706 3 0.012909 11671 20211116_3441_TMUAki_TMT10x_S_F3 67.881 44.357 523840 948870 9138.3 828780 551650 464320 491360 884700 940730 763460 900280 487820 884950 52336 848520 527980 504940 515470 874660 935930 750630 869720 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 523840 948870 9138.3 828780 551650 464320 491360 884700 940730 763460 900280 487820 884950 52336 848520 527980 504940 515470 874660 935930 750630 869720 1 1 1 1 1 1 1 1 1 1 1 41353000 19648000 21705000 17344 1084 15934 88109;88110;88111 106608;106609 106609 2 SKVTLLEGDHVR Unmodified 1352.7412 0.74121312 346 O75534;O75534-2;O75534-3;O75534-4 CSDE1 Cold shock domain-containing protein E1 yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.634 35.687 4 3.944E-07 8993 20211116_3433_TMUAki_TMT10x_P_F5 124.51 112.35 1070100 1542800 9504.9 1688900 1720300 1500400 1047900 858990 870350 806330 1268600 996480 1440100 106690 1709800 1633200 1525700 1092600 904150 907330 789670 1211500 2 2 2 2 2 2 2 2 2 2 2 726580 1028600 5090.3 1072200 1424400 1244700 739080 553790 546330 517510 833990 676560 959930 74755 1093300 1348800 1241900 779540 596840 574440 506920 795610 1 1 1 1 1 1 1 1 1 1 1 343570 514190 4414.5 616630 295950 255700 308790 305200 324010 288810 434620 319930 480180 31931 616430 284360 283870 313020 307320 332890 282750 415840 1 1 1 1 1 1 1 1 1 1 1 168020000 129540000 38476000 17345 346 15935 88112;88113;88114 106610;106611 106610 2 SLACQPISFSGFGAEDDDLGGLGLGP Unmodified 2579.185 0.18498318 1086 P49005 POLD2 DNA polymerase delta subunit 2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.43 1.18 2 2 1 2 3 4 82.286 82.276 3 4.691E-09 27042 20211116_3445_TMUAki_TMT10x_S_F6 98.74 88.991 5096900 8032300 39876 8208200 5892800 7358200 6250900 4314300 4618600 4844800 6484800 4745300 7495700 372550 8348600 5655300 7480100 6271300 4555900 4836300 4709900 6197900 9 9 3 9 9 9 9 9 9 9 9 2256700 3405800 0 3171400 2016900 3891600 2297700 1843000 2001900 2161400 2701000 2100600 3177100 100120 3262700 1935500 3874100 2306900 1986800 2074300 2097800 2583900 3 3 0 3 3 3 3 3 3 3 3 2840200 4626500 39876 5036700 3875900 3466600 3953200 2471200 2616700 2683500 3783800 2644700 4318600 272430 5085800 3719800 3606000 3964400 2569200 2761900 2612100 3614000 6 6 3 6 6 6 6 6 6 6 6 1348900000 421940000 927000000 17346 1086 15936 88115;88116;88117;88118;88119;88120;88121 106612;106613;106614;106615;106616;106617;106618;106619;106620 106620 9 SLADELALVDVLEDK Unmodified 1628.8509 0.85088273 531 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 0 By MS/MS By MS/MS 2.36 1.19 22 44 24 5 3 4 49 53 56.061 56.007 2;3 2.6797E-116 26702 20211116_3428_TMUAki_TMT10x_P_F1 380.65 331.3 1110000000 1623800000 6084500 2045900000 730270000 945800000 872970000 427840000 530410000 585480000 1013400000 1033400000 1516700000 70144000 2040900000 703290000 1005400000 865540000 465860000 571730000 565320000 962650000 121 121 59 121 121 120 119 120 120 121 120 607950000 851220000 1884500 1065000000 364930000 640720000 408120000 220190000 281320000 303080000 535150000 566000000 795080000 38514000 1065000000 350480000 669440000 407790000 247580000 300750000 292590000 508380000 53 53 25 53 53 53 52 52 52 53 52 502030000 772540000 4200000 980920000 365330000 305080000 464840000 207650000 249090000 282410000 478260000 467440000 721640000 31630000 975870000 352810000 335910000 457740000 218280000 270980000 272730000 454270000 68 68 34 68 68 67 67 68 68 68 68 212690000000 106050000000 106640000000 17347 531 15937 88122;88123;88124;88125;88126;88127;88128;88129;88130;88131;88132;88133;88134;88135;88136;88137;88138;88139;88140;88141;88142;88143;88144;88145;88146;88147;88148;88149;88150;88151;88152;88153;88154;88155;88156;88157;88158;88159;88160;88161;88162;88163;88164;88165;88166;88167;88168;88169;88170;88171;88172;88173;88174;88175;88176;88177;88178;88179;88180;88181;88182;88183;88184;88185;88186;88187;88188;88189;88190;88191;88192;88193;88194;88195;88196;88197;88198;88199;88200;88201;88202;88203;88204;88205;88206;88207;88208;88209;88210;88211;88212;88213;88214;88215;88216;88217;88218;88219;88220;88221;88222;88223 106621;106622;106623;106624;106625;106626;106627;106628;106629;106630;106631;106632;106633;106634;106635;106636;106637;106638;106639;106640;106641;106642;106643;106644;106645;106646;106647;106648;106649;106650;106651;106652;106653;106654;106655;106656;106657;106658;106659;106660;106661;106662;106663;106664;106665;106666;106667;106668;106669;106670;106671;106672;106673;106674;106675;106676;106677;106678;106679;106680;106681;106682;106683;106684;106685;106686;106687;106688;106689;106690;106691;106692;106693;106694;106695;106696;106697;106698;106699;106700;106701;106702;106703;106704;106705;106706;106707;106708;106709;106710;106711;106712;106713;106714;106715;106716;106717;106718;106719;106720;106721;106722;106723;106724;106725;106726;106727;106728;106729;106730;106731;106732;106733;106734;106735;106736;106737;106738;106739;106740;106741;106742;106743;106744;106745;106746;106747;106748;106749;106750;106751;106752;106753;106754;106755;106756;106757 106622 137 SLADELALVDVLEDKLK Unmodified 1870.0299 0.02990973 531 P07195 LDHB L-lactate dehydrogenase B chain yes yes 0 0 0 1 By MS/MS By MS/MS 3.43 1.05 2 1 3 1 4 3 81.068 81.057 3;4 4.52E-36 28658 20211116_3430_TMUAki_TMT10x_P_F3 211.29 177.11 54423000 91365000 401380 64765000 64292000 89935000 80114000 55642000 52360000 63137000 72131000 50675000 85154000 4868200 68326000 62058000 89297000 79577000 58528000 55183000 61354000 68970000 12 12 5 12 12 12 12 12 12 12 12 24281000 39727000 46570 28755000 25666000 48216000 31341000 23830000 22512000 27779000 31202000 22607000 37028000 1982300 30400000 24749000 47371000 31221000 25578000 23597000 26968000 29831000 6 6 2 6 6 6 6 6 6 6 6 30142000 51638000 354810 36011000 38626000 41719000 48773000 31812000 29848000 35358000 40929000 28067000 48126000 2885900 37926000 37309000 41926000 48356000 32950000 31587000 34386000 39140000 6 6 3 6 6 6 6 6 6 6 6 7861700000 3911000000 3950700000 17348 531 15938 88224;88225;88226;88227;88228;88229;88230 106758;106759;106760;106761;106762;106763;106764;106765;106766;106767;106768;106769 106759 12 SLADIAREEASNFR Unmodified 1577.7798 0.77978347 808 P25788;P25788-2 PSMA3 Proteasome subunit alpha type-3 yes no 0 0 0 1 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 60.668 60.725 3 5.9397E-14 18754 20211116_3431_TMUAki_TMT10x_P_F4 149.6 133.07 14995000 23095000 155420 23976000 17780000 27251000 17407000 18754000 19636000 18240000 19330000 13962000 21554000 1313800 24446000 17041000 27369000 17745000 19482000 19868000 17835000 18656000 4 4 2 4 4 4 4 4 4 4 4 11343000 17633000 155420 18718000 13696000 23632000 14233000 14398000 15066000 13717000 14752000 10562000 16458000 1033300 19092000 13150000 23565000 14435000 15085000 15280000 13425000 14240000 3 3 2 3 3 3 3 3 3 3 3 3652100 5462200 0 5258000 4084100 3618900 3173500 4355900 4569600 4522600 4578200 3400300 5096000 280480 5353900 3891300 3804400 3309900 4396600 4588000 4410100 4416100 1 1 0 1 1 1 1 1 1 1 1 1290000000 778790000 511210000 17349 808 15939 88231;88232;88233 106770;106771;106772;106773 106770 4 SLAELTACSIELFHK Unmodified 1717.8709 0.87090667 2938 Q9NRY5 FAM114A2 Protein FAM114A2 yes yes 0 0 0 0 By MS/MS 8 0 1 1 78.055 78.004 3 0.014756 24996 20211116_3447_TMUAki_TMT10x_S_F8 51.03 37.313 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17350 2938 15940 88234 106774 106774 1 SLAESLDQAESPTFPYLNTLLR Unmodified 2464.2486 0.24856971 3241 Q9Y2L1;Q9Y2L1-2 DIS3 Exosome complex exonuclease RRP44 yes no 0 0 0 0 By matching By MS/MS 6.33 0.471 2 1 1 2 80.191 80.201 3 0.0056682 28356 20211116_3446_TMUAki_TMT10x_S_F7 47.744 32.323 8634700 13180000 830550 13751000 8300100 9347200 11081000 8564700 8669900 9533800 11025000 8045900 12301000 1485200 13923000 8078700 9776400 11020000 8776500 9009200 9271300 10562000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8634700 13180000 830550 13751000 8300100 9347200 11081000 8564700 8669900 9533800 11025000 8045900 12301000 1485200 13923000 8078700 9776400 11020000 8776500 9009200 9271300 10562000 1 1 1 1 1 1 1 1 1 1 1 1301100000 294530000 1006600000 17351 3241 15941 88235;88236;88237 106775 106775 1 SLAGFQESILTDKK Unmodified 1535.8195 0.81952302 1447 P83436 COG7 Conserved oligomeric Golgi complex subunit 7 yes yes 0 0 0 1 By MS/MS 8 0 1 1 60.972 60.977 3 0.086897 18032 20211116_3447_TMUAki_TMT10x_S_F8 36.127 13.009 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17352 1447 15942 88238 106776 106776 1 SLAGSSGPGASSGTSGDHGELVVR Unmodified 2184.0407 0.040702201 856;855 P29692;P29692-2 EEF1D Elongation factor 1-delta no no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 35.22 35.321 3 5.6059E-87 8607 20211116_3431_TMUAki_TMT10x_P_F4 264.8 249.55 255250 381390 4999.7 582240 597520 632040 270710 278260 367030 255570 323720 237700 356630 30615 580540 565020 632860 294660 300090 367630 250540 313620 2 2 2 2 2 2 2 2 2 2 2 192900 288170 3030.9 455540 544220 598430 232590 202040 275400 193810 244750 179630 269520 23738 455040 514170 591920 253550 225180 277210 189630 237050 1 1 1 1 1 1 1 1 1 1 1 62351 93219 1968.8 126710 53308 33611 38112 76225 91629 61763 78968 58070 87109 6877.5 125500 50851 40941 41110 74917 90426 60917 76569 1 1 1 1 1 1 1 1 1 1 1 118450000 106100000 12349000 17353 855;856 15943 88239;88240 106777;106778 106777 2 SLAMEMVLTGDR 2 Oxidation (M) 1353.6268 0.62683657 865 P30084 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 0 0 2 0 By MS/MS By MS/MS 3 0 2 1 1 41.455 41.324 2 0.00093337 12161 20211116_3430_TMUAki_TMT10x_P_F3 78.932 57.484 1306700 2153800 23801 2485300 1279100 1277200 1239500 1724800 1931000 1544900 2007900 1216800 2010900 127920 2493900 1226700 1385700 1280800 1725700 1936900 1516300 1934600 3 3 1 3 3 3 3 3 3 3 3 125740 207090 0 210170 191220 210870 128670 136300 162360 115490 150050 117060 193250 10121 214200 181700 213100 134830 141720 163270 113650 145130 1 1 0 1 1 1 1 1 1 1 1 1181000 1946700 23801 2275100 1087800 1066300 1110900 1588500 1768600 1429400 1857900 1099800 1817700 117800 2279700 1045000 1172600 1146000 1584000 1773600 1402600 1789500 2 2 1 2 2 2 2 2 2 2 2 139100000 107130000 31967000 17354 865 15944 88241;88242 106779;106780;106781 106779 1032;1033 3 SLAPAGKD Unmodified 757.39702 0.39701828 902 P32322;P32322-3 PYCR1 Pyrroline-5-carboxylate reductase 1, mitochondrial yes no 0 0 0 1 By MS/MS 5 0 1 1 32.969 33.147 2 0.0049888 6776 20211116_3444_TMUAki_TMT10x_S_F5 87.639 40.558 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17355 902 15945 88243 106782 106782 1 SLASVSYAAVDFFRPSAQR Unmodified 2071.0487 0.048688112 2621 Q9BQ39 DDX50 ATP-dependent RNA helicase DDX50 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 72.637 72.633 3 2.0642E-31 22774 20211116_3444_TMUAki_TMT10x_S_F5 185.85 174.57 32388000 53989000 83004 52343000 36273000 46122000 37840000 28652000 26721000 30069000 38842000 30156000 50371000 2636700 53422000 34813000 46977000 37956000 30055000 28101000 29309000 37094000 6 6 2 6 6 6 6 6 6 6 6 17011000 27518000 82228 26820000 17430000 30211000 19012000 14548000 14318000 15936000 20229000 15838000 25674000 1348400 27461000 16748000 30216000 19057000 15623000 14981000 15506000 19331000 3 3 1 3 3 3 3 3 3 3 3 15378000 26471000 775.66 25523000 18843000 15911000 18827000 14104000 12403000 14134000 18613000 14318000 24697000 1288300 25961000 18065000 16761000 18899000 14432000 13120000 13803000 17763000 3 3 1 3 3 3 3 3 3 3 3 3106700000 1446700000 1660000000 17356 2621 15946 88244;88245;88246;88247 106783;106784;106785;106786;106787;106788 106787 6 SLATTRPTVNADDLLK Unmodified 1713.9261 0.92611336 3187 Q9UN37 VPS4A Vacuolar protein sorting-associated protein 4A yes yes 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 51.746 52.096 3 2.6171E-15 16708 20211116_3446_TMUAki_TMT10x_S_F7 153.75 106.08 20225000 36334000 246600 40368000 30536000 34703000 21020000 31193000 32583000 27685000 31409000 18833000 33919000 2051000 40813000 29055000 35624000 22177000 31787000 32600000 27183000 30336000 4 4 4 4 4 4 4 4 4 4 4 9247500 15861000 152100 18615000 20277000 24674000 13533000 13804000 15023000 12578000 14664000 8611500 14810000 1062900 18887000 19282000 24518000 14126000 14547000 15205000 12335000 14157000 2 2 2 2 2 2 2 2 2 2 2 10978000 20473000 94499 21753000 10259000 10029000 7486500 17389000 17560000 15107000 16745000 10222000 19108000 988120 21926000 9772500 11105000 8050700 17240000 17395000 14848000 16179000 2 2 2 2 2 2 2 2 2 2 2 2179200000 1141100000 1038000000 17357 3187 15947 88248;88249;88250;88251 106789;106790;106791;106792 106792 4 SLAVSGLGVIGR Unmodified 1127.6663 0.66625727 1500 Q02880;Q02880-2 TOP2B DNA topoisomerase 2-beta yes no 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 58.835 58.55 2 4.8428E-20 19060 20211116_3429_TMUAki_TMT10x_P_F2 235.66 151.88 18720000 31123000 111470 32123000 25123000 31592000 22218000 32575000 27323000 26462000 28497000 17430000 29045000 1685300 32692000 24019000 32239000 22847000 32888000 27614000 26096000 27454000 4 4 3 4 4 4 4 4 4 4 4 9052700 14574000 67245 15945000 13440000 21478000 12310000 15983000 13433000 13193000 14319000 8429500 13604000 874660 16253000 12863000 21416000 12581000 16444000 13648000 13000000 13785000 2 2 2 2 2 2 2 2 2 2 2 9667000 16549000 44226 16178000 11683000 10114000 9907900 16592000 13889000 13269000 14179000 9000800 15441000 810690 16439000 11156000 10823000 10266000 16443000 13966000 13096000 13669000 2 2 1 2 2 2 2 2 2 2 2 2725700000 1457100000 1268600000 17358 1500 15948 88252;88253;88254;88255;88256 106793;106794;106795;106796;106797 106794 5 SLCIGATYDVTDSR Unmodified 1556.7141 0.71407167 100 O00541;O00541-2 PES1 Pescadillo homolog yes no 0 0 0 0 By MS/MS 4 0 2 2 53.158 53.206 2;3 1.1684E-35 16145 20211116_3442_TMUAki_TMT10x_S_F4 234.24 196.76 5417500 9044800 117300 10959000 4925200 4200100 4883100 6178700 6066100 5588300 7130800 5045000 8446900 535220 10944000 4727500 4740100 4991900 6164600 6157300 5482100 6845800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5417500 9044800 117300 10959000 4925200 4200100 4883100 6178700 6066100 5588300 7130800 5045000 8446900 535220 10944000 4727500 4740100 4991900 6164600 6157300 5482100 6845800 2 2 1 2 2 2 2 2 2 2 2 142640000 0 142640000 17359 100 15949 88257;88258 106798;106799;106800 106800 3 SLCIPFKPLCELQPGAK Unmodified 1957.0165 0.016525047 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 1 By MS/MS By MS/MS 2.67 0.667 4 4 1 4 5 72.179 71.95 3;4 1.8109E-21 25022 20211116_3430_TMUAki_TMT10x_P_F3 165.9 139.17 89276000 143490000 886600 136870000 111880000 141800000 113230000 98077000 85861000 99512000 112000000 83129000 133870000 8207900 140170000 107340000 143170000 113940000 101970000 89474000 97130000 107240000 15 15 11 15 15 15 15 15 15 15 15 44559000 69466000 330700 65331000 52161000 91070000 59036000 48291000 42946000 48354000 53354000 41491000 64804000 4079400 67326000 50205000 90227000 59025000 51260000 44763000 47222000 51146000 6 6 5 6 6 6 6 6 6 6 6 44717000 74025000 555900 71537000 59722000 50730000 54194000 49786000 42916000 51159000 58649000 41638000 69063000 4128600 72844000 57139000 52942000 54911000 50707000 44711000 49908000 56090000 9 9 6 9 9 9 9 9 9 9 9 18499000000 9296700000 9201800000 17360 542 15950 88259;88260;88261;88262;88263;88264;88265;88266;88267 106801;106802;106803;106804;106805;106806;106807;106808;106809;106810;106811;106812;106813;106814;106815 106804 15 SLDAQSVYVATDSESYVPELQQLFK Unmodified 2816.3756 0.37562072 2804 Q9H488 POFUT1 GDP-fucose protein O-fucosyltransferase 1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 80.134 80.143 3 0.0051737 26916 20211116_3431_TMUAki_TMT10x_P_F4 44.167 11.777 948950 1447400 0 1168100 783420 1508300 1108300 865480 888010 940740 940500 883320 1349500 44853 1216500 757300 1501100 1100400 914650 914900 915670 905640 1 1 0 1 1 1 1 1 1 1 1 948950 1447400 0 1168100 783420 1508300 1108300 865480 888010 940740 940500 883320 1349500 44853 1216500 757300 1501100 1100400 914650 914900 915670 905640 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5869000000 5869000000 0 17361 2804 15951 88268 106816 106816 1 SLDIQVPNFPADETK Unmodified 1672.8308 0.83081599 1065 P47897;P47897-2 QARS Glutamine--tRNA ligase yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 70.602 70.641 3 4.1834E-05 22002 20211116_3444_TMUAki_TMT10x_S_F5 92.575 72.737 11239000 19772000 71362 19212000 13534000 17933000 13476000 13574000 12766000 13271000 15192000 10465000 18447000 1015100 19620000 12978000 18250000 13650000 14012000 13105000 12973000 14580000 4 4 3 4 4 4 4 4 4 4 4 5454200 9168900 41537 9150900 6228800 11512000 6753500 6264200 6207800 6104900 7211500 5078700 8555500 501750 9372000 5988200 11464000 6806100 6629100 6374800 5968900 6925600 2 2 2 2 2 2 2 2 2 2 2 5784400 10603000 29825 10061000 7304700 6421000 6722100 7309500 6558500 7165700 7980100 5385900 9891900 513310 10248000 6990300 6785800 6844000 7382600 6729700 7004400 7654100 2 2 1 2 2 2 2 2 2 2 2 1077300000 527990000 549300000 17362 1065 15952 88269;88270;88271 106817;106818;106819;106820;106821 106821 5 SLDIVCKPVPFFLR Unmodified 1689.9276 0.92763369 3044 Q9P015 MRPL15 39S ribosomal protein L15, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 76.254 76.272 3 0.00096971 24343 20211116_3444_TMUAki_TMT10x_S_F5 75.316 55.478 9530000 16599000 0 15122000 10116000 10592000 8957800 5803300 5042800 5431300 9656200 8873100 15483000 760910 15463000 9668200 10962000 9025700 6130900 5465200 5319800 9172200 2 2 0 2 2 2 2 2 2 2 2 4944600 8190300 0 7357400 3615900 6071500 3923600 2837400 2389600 2728900 4851800 4603700 7639300 361480 7545400 3472900 6191900 3916300 3044800 2585500 2669700 4604100 1 1 0 1 1 1 1 1 1 1 1 4585400 8409100 0 7764200 6500100 4520300 5034200 2966000 2653200 2702300 4804500 4269400 7844200 399430 7917800 6195300 4770100 5109400 3086100 2879700 2650100 4568100 1 1 0 1 1 1 1 1 1 1 1 486020000 252050000 233960000 17363 3044 15953 88272;88273 106822;106823 106823 2 SLDLDISK Unmodified 889.47566 0.47566253 1019 P42765 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 55.646 55.539 2 0.0006878 17109 20211116_3442_TMUAki_TMT10x_S_F4 135.83 66.915 8525300 13469000 13299 13648000 9321600 9660600 8314800 10329000 9534900 9190300 10314000 7937600 12569000 677510 13851000 8910100 10103000 8524500 10434000 9674300 9022700 9925300 2 2 1 2 2 2 2 2 2 2 2 1737700 2706800 13299 2576100 2421800 3644800 2280800 2547100 2445800 2091200 2345100 1618000 2525200 166040 2653200 2319400 3622500 2326000 2631500 2477400 2061100 2265300 1 1 1 1 1 1 1 1 1 1 1 6787600 10762000 0 11072000 6899900 6015700 6034000 7782000 7089100 7099200 7968800 6319500 10044000 511470 11198000 6590700 6480000 6198500 7802700 7196900 6961600 7660000 1 1 0 1 1 1 1 1 1 1 1 717690000 118720000 598970000 17364 1019 15954 88274;88275;88276 106824;106825;106826 106826 3 SLDLFNCEITNLEDYR Unmodified 2000.915 0.91495633 2666 Q9BTT0;Q9BTT0-3;Q9BTT0-2 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E yes no 0 0 0 0 By MS/MS By MS/MS 2.75 0.829 2 1 1 3 1 51.278 51.147 2;3 5.1538E-11 26702 20211116_3442_TMUAki_TMT10x_S_F4 134.85 110.81 1553700 2418400 2649.1 2464800 1843700 1856000 2077100 1684600 1624100 1762300 1935400 1446700 2256800 134710 2502100 1773900 1924500 2080700 1723800 1683100 1718000 1857400 2 2 1 2 2 2 2 2 2 2 2 7976.4 7520.1 0 9794.3 6118.2 13428 10314 5211.8 6109.7 7138.3 6098.8 7426.8 7025.5 0 9885.5 5971.8 13271 10112 5771.4 6399.1 6892.3 5883.7 1 1 0 1 1 1 1 1 1 1 1 1545800 2410900 2649.1 2455000 1837600 1842600 2066800 1679400 1618000 1755200 1929300 1439300 2249800 134710 2492200 1767900 1911200 2070600 1718000 1676700 1711100 1851500 1 1 1 1 1 1 1 1 1 1 1 414800000 503180 414300000 17365 2666 15955 88277;88278;88279;88280 106827;106828;106829;106830 106830 4 SLDLFNCEVTNLNDYR Unmodified 1971.8996 0.89964061 977;2357 P39687;Q92688;Q92688-2 ANP32A;ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member A;Acidic leucine-rich nuclear phosphoprotein 32 family member B no no 0 0 0 0 By MS/MS By MS/MS 4.44 1.26 1 4 4 4 5 9 9 76.647 76.606 2;3 1.1871E-141 25533 20211116_3433_TMUAki_TMT10x_P_F5 395.12 348.33 70514000 119320000 348470 109790000 74650000 108320000 89701000 61883000 58632000 72761000 88577000 65651000 111300000 5399700 112650000 71924000 109390000 89238000 65588000 62070000 70614000 84520000 22 22 9 22 22 22 22 22 22 22 22 37740000 62431000 242450 57992000 35623000 69478000 44105000 33302000 32085000 38616000 46308000 35139000 58238000 2968200 59647000 34362000 69258000 43922000 35844000 33672000 37496000 44231000 11 11 5 11 11 11 11 11 11 11 11 32773000 56890000 106010 51795000 39027000 38837000 45596000 28581000 26546000 34145000 42269000 30512000 53066000 2431500 53006000 37562000 40134000 45317000 29744000 28398000 33119000 40288000 11 11 4 11 11 11 11 11 11 11 11 27027000000 12847000000 14180000000 17366 977;2357 15956 88281;88282;88283;88284;88285;88286;88287;88288;88289;88290;88291;88292;88293;88294;88295;88296;88297;88298 106831;106832;106833;106834;106835;106836;106837;106838;106839;106840;106841;106842;106843;106844;106845;106846;106847;106848;106849;106850;106851;106852;106853;106854 106839 24 SLDLFNCEVTNLNDYRENVFK Unmodified 2589.217 0.21695201 977 P39687 ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member A yes yes 0 0 0 1 By MS/MS By MS/MS 6.26 1.82 1 2 2 4 3 5 10 18 9 77.604 77.598 3;4 8.9509E-76 27395 20211116_3446_TMUAki_TMT10x_S_F7 261.17 243.64 407590000 685000000 4103600 613300000 449400000 630980000 491170000 392790000 339250000 411870000 499330000 379520000 638910000 36756000 630990000 432110000 636360000 491320000 411960000 357460000 401470000 476730000 38 38 27 38 38 38 38 38 38 38 38 257860000 426310000 2356100 383440000 236550000 454390000 292000000 250710000 212850000 261650000 312610000 240100000 397630000 22152000 395260000 228280000 453950000 290840000 265510000 223540000 255090000 298470000 28 28 21 28 28 28 28 28 28 28 28 149730000 258690000 1747500 229860000 212850000 176590000 199170000 142080000 126400000 150220000 186730000 139430000 241280000 14604000 235730000 203830000 182410000 200490000 146450000 133920000 146380000 178260000 10 10 6 10 10 10 10 10 10 10 10 76905000000 39629000000 37276000000 17367 977 15957 88299;88300;88301;88302;88303;88304;88305;88306;88307;88308;88309;88310;88311;88312;88313;88314;88315;88316;88317;88318;88319;88320;88321;88322;88323;88324;88325 106855;106856;106857;106858;106859;106860;106861;106862;106863;106864;106865;106866;106867;106868;106869;106870;106871;106872;106873;106874;106875;106876;106877;106878;106879;106880;106881;106882;106883;106884;106885;106886;106887;106888;106889;106890;106891;106892;106893;106894;106895 106892 41 SLDLFNCEVTNLNDYRESVFK Unmodified 2562.2061 0.20605297 2357 Q92688;Q92688-2 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B yes no 0 0 0 1 By MS/MS By MS/MS 6.18 1.64 1 1 2 1 3 3 7 4 57.893 57.893 3 5.1464E-47 27107 20211116_3435_TMUAki_TMT10x_P_F7 218.72 196.84 102900000 178760000 1224500 165820000 158990000 141250000 125370000 109490000 85201000 108090000 132020000 95812000 166750000 10177000 169710000 151660000 144700000 127680000 112880000 90096000 105620000 125900000 14 14 12 14 14 14 14 14 14 14 14 32607000 49725000 107400 49434000 29180000 59589000 27875000 32437000 26083000 31704000 38268000 30359000 46398000 2474400 50603000 27935000 59468000 28288000 34328000 27045000 30994000 36539000 8 8 6 8 8 8 8 8 8 8 8 70289000 129030000 1117100 116380000 129810000 81662000 97496000 77050000 59118000 76385000 93749000 65454000 120350000 7702200 119100000 123720000 85230000 99396000 78552000 63051000 74629000 89364000 6 6 6 6 6 6 6 6 6 6 6 20493000000 6663200000 13830000000 17368 2357 15958 88326;88327;88328;88329;88330;88331;88332;88333;88334;88335;88336 106896;106897;106898;106899;106900;106901;106902;106903;106904;106905;106906;106907;106908;106909;106910 106898 15 SLDLIESLLR Unmodified 1157.6656 0.66558856 12 A5YKK6;A5YKK6-3;A5YKK6-2;A5YKK6-4 CNOT1 CCR4-NOT transcription complex subunit 1 yes no 0 0 0 0 By matching By MS/MS 6.5 0.5 1 1 1 1 80.171 80.186 2 0.046889 28342 20211116_3446_TMUAki_TMT10x_S_F7 56.209 33.469 4348000 8201500 0 7702800 5523400 3925600 6011200 3131200 3199800 3674500 5221700 4048400 7651000 0 7836800 5308400 4214200 5984800 3239900 3450100 3566300 4974600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4348000 8201500 0 7702800 5523400 3925600 6011200 3131200 3199800 3674500 5221700 4048400 7651000 0 7836800 5308400 4214200 5984800 3239900 3450100 3566300 4974600 1 1 0 1 1 1 1 1 1 1 1 861690000 193770000 667920000 17369 12 15959 88337;88338 106911 106911 1 SLDNFFAK Unmodified 940.46543 0.46543219 3163 Q9UKY7;Q9UKY7-2 CDV3 Protein CDV3 homolog yes no 0 0 0 0 By MS/MS 7 0.816 1 1 1 3 63.441 63.78 2 0.0021698 20915 20211116_3435_TMUAki_TMT10x_P_F7 112.84 55.664 12402000 20131000 0 21205000 24470000 31625000 17682000 15379000 16762000 16555000 18080000 11547000 18789000 1152600 21712000 23289000 31209000 18262000 16491000 17139000 16120000 17401000 1 1 0 1 1 1 1 1 1 1 1 12402000 20131000 0 21205000 24470000 31625000 17682000 15379000 16762000 16555000 18080000 11547000 18789000 1152600 21712000 23289000 31209000 18262000 16491000 17139000 16120000 17401000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1297000000 1297000000 0 17370 3163 15960 88339;88340;88341 106912;106913 106912 2 SLDQDPVVR Unmodified 1027.5298 0.52982336 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 35.182 35.098 2 6.1375E-06 9701 20211116_3429_TMUAki_TMT10x_P_F2 163.69 136.55 4031400 6597400 18959 7028000 6933800 5513900 4736600 4064400 4659800 3751300 5537300 3753700 6157700 354410 7116600 6593500 5678000 4917100 4196200 4775000 3676600 5314400 7 7 3 7 7 7 7 7 7 7 7 1975200 3127800 9933.7 3330300 4619000 3749600 2307700 2079100 2402400 1908900 2630400 1839100 2919300 206300 3389400 4371200 3756500 2464600 2193100 2448000 1871400 2530400 2 2 1 2 2 2 2 2 2 2 2 2056200 3469600 9025.4 3697700 2314800 1764300 2428900 1985400 2257300 1842300 2906900 1914500 3238300 148120 3727200 2222300 1921500 2452500 2003200 2327000 1805200 2784100 5 5 2 5 5 5 5 5 5 5 5 195590000 133800000 61793000 17371 2345 15961 88342;88343;88344;88345;88346 106914;106915;106916;106917;106918;106919;106920 106915 7 SLDQEIARPLENENQEFLK Unmodified 2272.1335 0.13353995 1080 P48681 NES Nestin yes yes 0 0 0 1 By MS/MS By MS/MS 3.2 0.748 1 2 2 2 3 62.865 62.599 3;4 5.8145E-58 22271 20211116_3441_TMUAki_TMT10x_S_F3 240.13 185.16 26760000 46691000 90225 45724000 27380000 30898000 25703000 22713000 25018000 24199000 31020000 24915000 43564000 2161000 46492000 26207000 32208000 26138000 23550000 25695000 23572000 29738000 5 5 2 5 5 5 5 5 5 5 5 9260500 15068000 0 14473000 8461200 14552000 9137400 6316300 6997500 7689400 9644100 8621300 14057000 611460 14808000 8120600 14635000 9166800 6878700 7306300 7453300 9221400 2 2 0 2 2 2 2 2 2 2 2 17499000 31624000 90225 31251000 18919000 16346000 16565000 16396000 18021000 16509000 21376000 16294000 29507000 1549500 31684000 18086000 17573000 16971000 16672000 18388000 16119000 20517000 3 3 2 3 3 3 3 3 3 3 3 2400000000 1469200000 930810000 17372 1080 15962 88347;88348;88349;88350;88351 106921;106922;106923;106924;106925;106926 106923 6 SLDSFLLSPEAAVGLLK Unmodified 1758.9768 0.97675195 3322 Q9Y5L0;Q9Y5L0-3;Q9Y5L0-1 TNPO3 Transportin-3 yes no 0 0 0 0 By MS/MS By MS/MS 5.75 2.82 2 1 2 3 5 3 81.426 81.433 2;3 6.4181E-22 26973 20211116_3436_TMUAki_TMT10x_P_F8 172.82 146.04 5687500 9117900 50114 9100200 6169800 8438500 7038600 4633500 3654500 5237400 7117100 5295600 8507900 479240 9275100 5937800 8551900 6989400 4921100 3988800 5090200 6758400 5 5 2 5 5 5 5 5 5 5 5 3617700 5750200 50114 5785300 3856000 6333500 4373400 2874100 2261000 3267600 4277900 3368700 5365700 341450 5907700 3712800 6340600 4343700 3108600 2464200 3175100 4064300 3 3 2 3 3 3 3 3 3 3 3 2069800 3367700 0 3314900 2313800 2104900 2665200 1759400 1393500 1969800 2839200 1926900 3142200 137790 3367400 2224900 2211200 2645700 1812600 1524600 1915100 2694100 2 2 0 2 2 2 2 2 2 2 2 3034700000 2425100000 609640000 17373 3322 15963 88352;88353;88354;88355;88356;88357;88358;88359 106927;106928;106929;106930;106931;106932 106928 6 SLEAEILQLQEELASSER Unmodified 2044.0324 0.032428926 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.601 10 7 1 3 15 64.391 64.384 2;3 4.7932E-117 26602 20211116_3428_TMUAki_TMT10x_P_F1 363.37 330.14 26850000 43027000 122850 40334000 29941000 37880000 34074000 25174000 24292000 26374000 34158000 24999000 40139000 1909800 41301000 28809000 38455000 34044000 26272000 25491000 25708000 32645000 18 18 9 18 17 18 18 16 16 17 16 13355000 18033000 50006 17695000 11288000 22538000 13301000 11819000 10936000 12482000 15435000 12434000 16826000 692530 18148000 10869000 22421000 13313000 12577000 11389000 12163000 14750000 4 4 2 4 4 4 4 4 4 4 4 13495000 24994000 72843 22639000 18653000 15342000 20774000 13355000 13355000 13892000 18723000 12566000 23313000 1217200 23152000 17940000 16035000 20731000 13695000 14102000 13546000 17895000 14 14 7 14 13 14 14 12 12 13 12 11520000000 7263100000 4256600000 17374 935 15964 88360;88361;88362;88363;88364;88365;88366;88367;88368;88369;88370;88371;88372;88373;88374;88375;88376;88377 106933;106934;106935;106936;106937;106938;106939;106940;106941;106942;106943;106944;106945;106946;106947;106948;106949;106950;106951;106952;106953;106954 106934 22 SLEAQVAHADQQLR Unmodified 1564.7958 0.79576789 1741 Q14980;Q14980-2;Q14980-4;Q14980-3;Q14980-5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.69 0.91 2 2 7 2 4 9 35.084 35.093 3 8.9091E-24 9785 20211116_3442_TMUAki_TMT10x_S_F4 190.44 155.71 9549200 15074000 122830 17154000 17145000 15539000 10381000 11885000 13321000 10511000 14231000 8891700 14073000 932610 17329000 16272000 15848000 10975000 12227000 13455000 10322000 13700000 15 15 5 15 15 15 15 15 15 15 15 5768100 8569200 114920 10074000 13528000 12345000 6924500 6783000 7945500 6119900 8547000 5371500 8001600 681150 10204000 12811000 12312000 7400700 7157400 8059800 6004400 8226400 4 4 3 4 4 4 4 4 4 4 4 3781100 6504400 7908.4 7080700 3617000 3193800 3456500 5101600 5375400 4390800 5684300 3520200 6071500 251450 7124600 3461300 3536300 3573900 5069400 5395600 4317600 5473800 11 11 2 11 11 11 11 11 11 11 11 2968200000 2084300000 883870000 17375 1741 15965 88378;88379;88380;88381;88382;88383;88384;88385;88386;88387;88388;88389;88390 106955;106956;106957;106958;106959;106960;106961;106962;106963;106964;106965;106966;106967;106968;106969;106970;106971 106968 17 SLEDALAEAQR Unmodified 1201.5939 0.59388018 423 O95347;O95347-2 SMC2 Structural maintenance of chromosomes protein 2 yes no 0 0 0 0 By MS/MS 2 0 1 1 53.868 53.673 2 0.0043008 15809 20211116_3440_TMUAki_TMT10x_S_F2 72.2 51.871 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17376 423 15966 88391 106972 106972 1 SLEDALR Unmodified 802.41848 0.418482 1872 Q16891;Q16891-2;Q16891-4;Q16891-3 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 By MS/MS 3 0 1 1 42.06 41.744 2 0.054937 13757 20211116_3441_TMUAki_TMT10x_S_F3 66.429 15.094 1153700 1825700 8009.1 2022800 1111800 861060 1092900 1253300 1258100 979610 1543500 1074300 1704300 102530 2032300 1066000 957660 1114700 1246200 1282800 968020 1480100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1153700 1825700 8009.1 2022800 1111800 861060 1092900 1253300 1258100 979610 1543500 1074300 1704300 102530 2032300 1066000 957660 1114700 1246200 1282800 968020 1480100 1 1 1 1 1 1 1 1 1 1 1 48376000 0 48376000 17377 1872 15967 88392 106973 106973 1 SLEDPYSQQIR Unmodified 1334.6466 0.64664404 2971 Q9NVH2;Q9NVH2-3;Q9NVH2-2;Q9NVH2-4 INTS7 Integrator complex subunit 7 yes no 0 0 0 0 By MS/MS 3 0 1 1 42.554 42.608 2 4.7477E-08 12995 20211116_3430_TMUAki_TMT10x_P_F3 147.73 115.51 329700 528580 0 732100 1055900 923810 527830 458740 553920 428260 511110 306960 493980 34994 735350 999020 918840 563820 488970 560860 419520 494380 1 1 0 1 1 1 1 1 1 1 1 329700 528580 0 732100 1055900 923810 527830 458740 553920 428260 511110 306960 493980 34994 735350 999020 918840 563820 488970 560860 419520 494380 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26847000 26847000 0 17378 2971 15968 88393 106974 106974 1 SLEDQVEMLR Oxidation (M) 1234.5864 0.58635197 666 P14314;P14314-2 PRKCSH Glucosidase 2 subunit beta yes no 0 0 1 0 By MS/MS By MS/MS 2.2 0.98 3 3 3 1 3 7 49.798 49.604 2 0.00071468 14257 20211116_3440_TMUAki_TMT10x_S_F2 106.91 74.769 13850000 22881000 68308 26309000 19163000 23693000 14909000 23023000 24337000 20092000 20844000 12895000 21363000 1206300 26558000 18266000 24283000 15637000 23354000 24223000 19744000 20215000 7 7 4 7 7 7 7 7 7 7 7 6228000 9379300 24868 11092000 12117000 16593000 8818400 9803000 10474000 8627400 8774300 5798700 8758300 586250 11277000 11534000 16412000 9168600 10274000 10522000 8474400 8516800 3 3 2 3 3 3 3 3 3 3 3 7621800 13502000 43440 15217000 7046200 7100200 6090800 13220000 13864000 11465000 12069000 7096600 12605000 620070 15281000 6732000 7871400 6468700 13079000 13700000 11270000 11698000 4 4 2 4 4 4 4 4 4 4 4 3656300000 1576200000 2080100000 17379 666 15969 88394;88395;88396;88397;88398;88399;88400;88401;88402;88403 106975;106976;106977;106978;106979;106980;106981;106982 106980 729 8 SLEDQVEMLR Unmodified 1218.5914 0.59143734 666 P14314;P14314-2 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 3 1 55.488 55.291 2 6.0863E-31 19266 20211116_3441_TMUAki_TMT10x_S_F3 250.49 195.88 4459700 6807900 0 8436000 8016400 9112300 6428900 4249000 3459400 3561000 5376600 4152100 6358600 376320 8501200 7643800 9132000 6512100 4544900 3717300 3506200 5127200 1 1 0 1 1 1 1 1 1 1 1 4459700 6807900 0 8436000 8016400 9112300 6428900 4249000 3459400 3561000 5376600 4152100 6358600 376320 8501200 7643800 9132000 6512100 4544900 3717300 3506200 5127200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 515390000 515390000 0 17380 666 15969 88404;88405;88406;88407 106983;106984;106985;106986 106986 4 SLEDVVR Unmodified 816.43413 0.43413207 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 By MS/MS 3 0 1 1 38.992 39.035 2 0.012214 11394 20211116_3430_TMUAki_TMT10x_P_F3 96.285 16.688 353300 439680 0 505230 483790 461460 385140 243280 251010 255470 385270 328910 410520 25878 510130 461060 467900 391670 258720 265990 249010 367500 1 1 0 1 1 1 1 1 1 1 1 353300 439680 0 505230 483790 461460 385140 243280 251010 255470 385270 328910 410520 25878 510130 461060 467900 391670 258720 265990 249010 367500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 40229000 40229000 0 17381 1684 15970 88408 106987 106987 1 SLEEDLETLK Unmodified 1175.5921 0.59214885 1080 P48681 NES Nestin yes yes 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 68.56 68.465 2 6.5977E-11 21514 20211116_3428_TMUAki_TMT10x_P_F1 206.23 134 26360000 46139000 53473 48340000 28753000 33566000 25522000 25190000 25330000 25651000 32370000 24542000 43061000 2017500 48938000 27475000 34918000 26051000 26048000 26027000 25033000 31008000 3 3 1 3 3 3 3 3 3 3 3 8928800 15427000 53473 15583000 11941000 17892000 10667000 8567400 9215700 8682100 11160000 8314000 14395000 832280 15921000 11421000 17875000 10842000 9184800 9507900 8474700 10706000 1 1 1 1 1 1 1 1 1 1 1 17432000 30712000 0 32757000 16812000 15674000 14855000 16623000 16114000 16969000 21209000 16228000 28665000 1185300 33017000 16055000 17043000 15209000 16863000 16519000 16559000 20302000 2 2 0 2 2 2 2 2 2 2 2 1649300000 861210000 788070000 17382 1080 15971 88409;88410;88411 106988;106989;106990;106991 106988 4 SLEEEEKFDPNER Unmodified 1620.7267 0.72674485 2081 Q7Z478 DHX29 ATP-dependent RNA helicase DHX29 yes yes 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 41.895 41.755 3 0.05136 10720 20211116_3428_TMUAki_TMT10x_P_F1 41.621 28.854 567460 826460 0 1164700 1941900 1509000 865080 962570 1120200 691250 922830 528290 772440 56645 1169400 1834300 1503700 941690 998130 1121400 686290 896330 1 1 0 1 1 1 1 1 1 1 1 567460 826460 0 1164700 1941900 1509000 865080 962570 1120200 691250 922830 528290 772440 56645 1169400 1834300 1503700 941690 998130 1121400 686290 896330 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 146010000 146010000 0 17383 2081 15972 88412;88413 106992 106992 1 SLEEEGQELPQSADVQR Unmodified 1913.8967 0.89666373 1080 P48681 NES Nestin yes yes 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 44.56 44.454 3 4.4398E-11 11756 20211116_3428_TMUAki_TMT10x_P_F1 130.12 121.13 3730500 6636300 100310 7224700 7193900 7687800 5278100 5568600 5442500 4627200 5974900 3474200 6194500 451270 7335800 6855700 7755700 5459100 5740600 5548500 4558000 5747300 4 4 4 4 4 4 4 4 4 4 4 2679600 4481300 82036 5215400 6121900 6668100 4334100 3990900 3985000 3408000 4331200 2495600 4184300 346820 5290500 5830000 6643300 4478900 4175300 4081600 3352500 4167400 3 3 3 3 3 3 3 3 3 3 3 1050900 2155000 18270 2009300 1072000 1019700 944040 1577800 1457500 1219200 1643700 978600 2010300 104450 2045300 1025800 1112400 980160 1565300 1466900 1205500 1579800 1 1 1 1 1 1 1 1 1 1 1 342920000 265520000 77397000 17384 1080 15973 88414;88415;88416 106993;106994;106995;106996;106997 106993 5 SLEEGEGPIAVIMTPTR Oxidation (M) 1814.9084 0.90841439 2049 Q7L014 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 0 0 1 0 By MS/MS 4 0 2 2 59.328 59.234 2;3 1.3898E-11 18602 20211116_3442_TMUAki_TMT10x_S_F4 140.14 122.71 5615200 9675000 111740 9181200 6933100 6054100 5533900 10519000 9131300 8661800 8526300 5229100 9025900 583560 9354400 6619100 6460700 5797800 10414000 9110700 8536100 8243700 4 4 3 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5615200 9675000 111740 9181200 6933100 6054100 5533900 10519000 9131300 8661800 8526300 5229100 9025900 583560 9354400 6619100 6460700 5797800 10414000 9110700 8536100 8243700 4 4 3 4 4 4 4 4 4 4 4 966080000 0 966080000 17385 2049 15974 88417;88418 106998;106999;107000;107001 107000 2566 4 SLEEIYLFSLPIK Unmodified 1550.8596 0.85959692 687 P15880 RPS2 40S ribosomal protein S2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.94 1.84 1 1 1 3 4 4 4 9 9 80.798 80.801 2;3 3.7017E-20 28152 20211116_3435_TMUAki_TMT10x_P_F7 198.62 170.23 141240000 221730000 926050 228590000 117280000 182570000 159140000 95796000 109010000 127290000 151770000 131510000 206920000 11309000 232030000 113500000 186880000 157680000 102720000 114610000 123020000 145090000 18 18 10 18 18 18 18 18 18 18 18 77777000 116420000 411080 121540000 65188000 121310000 72535000 52137000 58367000 66413000 81888000 72415000 108660000 5865200 123630000 62664000 122040000 72753000 56927000 60833000 64275000 78266000 9 9 3 9 9 9 9 9 9 9 9 63466000 105300000 514970 107050000 52089000 61258000 86607000 43660000 50640000 60874000 69886000 59096000 98267000 5443300 108400000 50835000 64835000 84931000 45794000 53774000 58743000 66821000 9 9 7 9 9 9 9 9 9 9 9 27418000000 14975000000 12442000000 17386 687 15975 88419;88420;88421;88422;88423;88424;88425;88426;88427;88428;88429;88430;88431;88432;88433;88434;88435;88436 107002;107003;107004;107005;107006;107007;107008;107009;107010;107011;107012;107013;107014;107015;107016;107017;107018;107019;107020 107007 19 SLEELLLDANQLR Unmodified 1512.8148 0.814772 1686 Q14160;Q14160-3;Q9BTT6;Q9BTT6-2 SCRIB;LRRC1 Protein scribble homolog;Leucine-rich repeat-containing protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 79.498 79.491 2 0.015865 26867 20211116_3442_TMUAki_TMT10x_S_F4 64.439 38.396 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17387 1686 15976 88437;88438 107021;107022 107022 2 SLEELPVDIILASVG Unmodified 1553.8552 0.85523983 3339 Q9Y678 COPG1 Coatomer subunit gamma-1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.75 0.829 2 1 1 2 2 85.598 85.595 2 4.1211E-07 30003 20211116_3429_TMUAki_TMT10x_P_F2 119.68 101.24 3449400 5699600 31037 5528600 3992700 4122400 4319200 3423000 3129700 3417700 4248700 3211700 5317700 292520 5631100 3836500 4270600 4327300 3515400 3275700 3338200 4063900 5 5 4 5 5 5 5 5 5 5 5 816720 1249700 5914.6 1260700 723120 1423300 863790 846230 766180 933200 975670 760250 1166100 41916 1287800 695310 1427000 865800 892110 791160 907830 934700 2 2 1 2 2 2 2 2 2 2 2 2632700 4449900 25123 4267900 3269600 2699100 3455500 2576800 2363500 2484500 3273000 2451500 4151600 250600 4343300 3141200 2843700 3461500 2623300 2484500 2430300 3129200 3 3 3 3 3 3 3 3 3 3 3 283000000 210040000 72957000 17388 3339 15977 88439;88440;88441;88442 107023;107024;107025 107023 3 SLEELRLEDYQANR Unmodified 1734.8537 0.8536767 1194 P52948;P52948-6;P52948-5;P52948-2;P52948-4;P52948-3 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 0 0 0 1 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 49.303 49.315 3 5.2796E-14 14522 20211116_3442_TMUAki_TMT10x_S_F4 150.81 127.9 13936000 21546000 129600 26380000 17432000 17831000 13240000 14356000 13532000 12917000 17304000 12976000 20123000 1211100 26443000 16609000 18614000 13658000 14728000 13888000 12674000 16576000 4 4 2 4 4 4 4 4 4 4 4 7149000 11121000 82133 13091000 12218000 13039000 7931200 7328300 7311500 6775300 8839100 6656500 10384000 675500 13215000 11608000 13159000 8249900 7722500 7519500 6639900 8479400 2 2 1 2 2 2 2 2 2 2 2 6787500 10425000 47470 13289000 5214000 4791600 5308300 7027300 6220700 6141300 8465000 6319800 9738300 535640 13228000 5001500 5455700 5407800 7005600 6368200 6034400 8096400 2 2 1 2 2 2 2 2 2 2 2 1494900000 846380000 648550000 17389 1194 15978 88443;88444;88445;88446;88447 107026;107027;107028;107029 107029 4 SLEFSER Unmodified 866.4134 0.41339662 886 P31323 PRKAR2B cAMP-dependent protein kinase type II-beta regulatory subunit yes yes 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 37.184 37.105 2 0.072247 8859 20211116_3440_TMUAki_TMT10x_S_F2 60.682 23.036 902110 1516000 33856 1611000 923100 897630 939100 1148300 1105500 1027100 1294300 840210 1415000 106640 1626100 887560 964080 956890 1151200 1124000 1008100 1242700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 902110 1516000 33856 1611000 923100 897630 939100 1148300 1105500 1027100 1294300 840210 1415000 106640 1626100 887560 964080 956890 1151200 1124000 1008100 1242700 2 2 2 2 2 2 2 2 2 2 2 24350000 0 24350000 17390 886 15979 88448;88449 107030 107030 1 SLEGADLPNLLFYGPPGTGK Unmodified 2045.047 0.046956778 928 P35249;P35249-2 RFC4 Replication factor C subunit 4 yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.745 1 2 3 3 3 79.352 79.359 2;3 1.0406E-15 25555 20211116_3447_TMUAki_TMT10x_S_F8 134.06 106.63 19912000 33203000 55544 31291000 22302000 26731000 24669000 19382000 17542000 19855000 23219000 18539000 30975000 1524400 31988000 21434000 27348000 24679000 20092000 18359000 19372000 22223000 5 5 1 5 5 5 5 5 5 5 5 8237800 12640000 0 12477000 7097500 13103000 8902000 8453000 7136100 8080700 9896000 7669600 11794000 588130 12749000 6845600 13205000 8880700 8817900 7435000 7907300 9460900 2 2 0 2 2 2 2 2 2 2 2 11675000 20563000 55544 18814000 15205000 13628000 15767000 10929000 10406000 11774000 13323000 10870000 19181000 936290 19239000 14588000 14143000 15798000 11274000 10924000 11464000 12762000 3 3 1 3 3 3 3 3 3 3 3 6238300000 3298700000 2939600000 17391 928 15980 88450;88451;88452;88453;88454;88455 107031;107032;107033;107034;107035;107036 107036 6 SLEGDLEDLK Unmodified 1117.5503 0.55028404 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 By MS/MS 1 0 1 1 62.387 62.387 2 0.0051305 19076 20211116_3428_TMUAki_TMT10x_P_F1 70.399 27.152 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17392 748 15981 88456 107037 107037 1 SLEIEEK Unmodified 846.43346 0.43346336 1397 P63151;P63151-2;Q66LE6;Q00005;Q9Y2T4;Q00005-2;Q9Y2T4-3;Q00005-6;Q9Y2T4-4;Q9Y2T4-2;Q00005-3;Q00005-4;Q00005-5;Q00005-7 PPP2R2A;PPP2R2D;PPP2R2B;PPP2R2C Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 42.012 41.881 2 0.01835 13938 20211116_3441_TMUAki_TMT10x_S_F3 89.752 14.563 1878600 2892100 9410 3415300 2306800 2453100 1863100 2027100 2144700 1795800 2481800 1749200 2700600 169190 3432800 2201200 2548800 1921700 2075600 2181500 1763400 2383700 2 2 1 2 2 2 2 2 2 2 2 730530 1099500 9410 1309000 1128300 1341200 897660 648170 703090 616730 954080 680270 1026800 74907 1321100 1076700 1348800 916580 693050 732690 603630 912590 1 1 1 1 1 1 1 1 1 1 1 1148100 1792500 0 2106300 1178400 1111900 965400 1378900 1441600 1179000 1527700 1069000 1673800 94285 2111700 1124500 1200100 1005100 1382500 1448800 1159800 1471100 1 1 0 1 1 1 1 1 1 1 1 45131000 21218000 23913000 17393 1397 15982 88457;88458 107038;107039 107039 2 SLELHEEFGYNADTQK Unmodified 1879.8588 0.85882166 1199 P53367;P53367-2 ARFIP1 Arfaptin-1 yes no 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 50.211 50.099 3 3.0207E-21 14891 20211116_3442_TMUAki_TMT10x_S_F4 164.3 146.21 1511500 2666100 6543.1 2843700 1715500 1498500 1449100 1986200 2222000 2005500 2187300 1407400 2488400 134270 2868300 1638600 1620500 1507800 1995400 2225400 1957800 2111000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1511500 2666100 6543.1 2843700 1715500 1498500 1449100 1986200 2222000 2005500 2187300 1407400 2488400 134270 2868300 1638600 1620500 1507800 1995400 2225400 1957800 2111000 1 1 1 1 1 1 1 1 1 1 1 393600000 0 393600000 17394 1199 15983 88459;88460 107040 107040 1 SLELNPNNSTAMLRK Unmodified 1686.8723 0.87230365 3256 Q9Y2Z0;Q9Y2Z0-2 SUGT1 Suppressor of G2 allele of SKP1 homolog yes no 0 0 0 1 By MS/MS 1 0 1 1 50.085 50.085 3 4.0411E-08 14054 20211116_3428_TMUAki_TMT10x_P_F1 106.3 84.743 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17395 3256 15984 88461 107041 107041 1 SLELNPNNSTAMLRK Oxidation (M) 1702.8672 0.86721827 3256 Q9Y2Z0;Q9Y2Z0-2 SUGT1 Suppressor of G2 allele of SKP1 homolog yes no 0 0 1 1 By MS/MS 8 0 1 1 43.225 43.235 3 0.034959 10927 20211116_3447_TMUAki_TMT10x_S_F8 40.187 11.89 439750 720470 10010 883840 400830 373850 322740 873570 1009200 654700 826280 409520 672880 45242 882490 382980 423540 352700 856410 990190 648430 802740 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 439750 720470 10010 883840 400830 373850 322740 873570 1009200 654700 826280 409520 672880 45242 882490 382980 423540 352700 856410 990190 648430 802740 1 1 1 1 1 1 1 1 1 1 1 64552000 0 64552000 17396 3256 15984 88462 107042 107042 3235 1 SLENAIEWSVK Unmodified 1274.6507 0.65066678 3313 Q9Y570;Q9Y570-4;Q9Y570-2 PPME1 Protein phosphatase methylesterase 1 yes no 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 68.935 68.961 2 7.1615E-11 21251 20211116_3434_TMUAki_TMT10x_P_F6 164.04 114.62 3388800 5241300 0 5069900 3886400 5400000 4356400 2414000 2285900 2797100 3567200 3154900 4890000 232940 5189200 3734700 5413700 4330200 2616600 2461600 2716100 3401500 1 1 0 1 1 1 1 1 1 1 1 3388800 5241300 0 5069900 3886400 5400000 4356400 2414000 2285900 2797100 3567200 3154900 4890000 232940 5189200 3734700 5413700 4330200 2616600 2461600 2716100 3401500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 564770000 564770000 0 17397 3313 15985 88463;88464 107043 107043 1 SLENYHFVDEHGKDQGINIR Unmodified 2370.1353 0.13527129 1721 Q14677;Q14677-2;Q14677-3 CLINT1 Clathrin interactor 1 yes no 0 0 0 1 By MS/MS By MS/MS 5.5 0.957 1 2 2 1 3 3 44.183 44.374 5 6.8641E-32 11577 20211116_3445_TMUAki_TMT10x_S_F6 183.65 162.29 7349100 12629000 110630 14798000 16131000 15990000 10250000 10894000 11368000 9843100 10536000 6842900 11792000 745300 14961000 15321000 16102000 10739000 11302000 11487000 9656600 10190000 5 5 4 5 5 5 5 5 5 5 5 5013400 8653200 77873 10212000 13930000 14141000 8420700 7981900 8706900 7302800 7145000 4667900 8080200 523000 10367000 13217000 14025000 8838400 8405900 8789800 7160300 6940900 3 3 2 3 3 3 3 3 3 3 3 2335700 3975400 32761 4586200 2201600 1849400 1829500 2912400 2661300 2540200 3391400 2175000 3711700 222300 4594600 2103600 2076700 1900900 2896400 2696900 2496200 3249000 2 2 2 2 2 2 2 2 2 2 2 2515700000 1721800000 793860000 17398 1721 15986 88465;88466;88467;88468;88469;88470 107044;107045;107046;107047;107048 107048 5 SLEQNIQLPAALLSR Unmodified 1651.9257 0.92571943 913 P33993;P33993-3 MCM7 DNA replication licensing factor MCM7 yes no 0 0 0 0 By MS/MS By MS/MS 6.33 2.46 2 1 4 5 5 7 73.994 74.025 2;3 1.2913E-51 25260 20211116_3435_TMUAki_TMT10x_P_F7 291.43 264.92 47917000 76655000 306000 73304000 45852000 65951000 51806000 42004000 41916000 45574000 53625000 44615000 71515000 3466400 74909000 44112000 67102000 51932000 44022000 43491000 44363000 51368000 13 13 6 13 13 13 13 13 13 13 13 29140000 44040000 182540 42594000 24597000 46466000 29727000 24619000 24843000 26951000 30950000 27132000 41088000 2296700 43613000 23710000 46607000 29734000 26203000 25704000 26226000 29667000 7 7 3 7 7 7 7 7 7 7 7 18777000 32615000 123460 30710000 21255000 19484000 22080000 17385000 17073000 18623000 22676000 17484000 30426000 1169700 31296000 20403000 20495000 22198000 17819000 17787000 18137000 21701000 6 6 3 6 6 6 6 6 6 6 6 17010000000 8087600000 8922300000 17399 913 15987 88471;88472;88473;88474;88475;88476;88477;88478;88479;88480;88481;88482 107049;107050;107051;107052;107053;107054;107055;107056;107057;107058;107059;107060;107061;107062;107063 107049 15 SLESINSR Unmodified 904.46141 0.46140945 1378 P62888 RPL30 60S ribosomal protein L30 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 32.862 32.756 2 0.0014947 10097 20211116_3441_TMUAki_TMT10x_S_F3 121.09 77.968 1277800 2196700 21400 2233000 1917900 1896400 1552100 1270000 1376200 1282500 1691100 1189800 2049900 122130 2270500 1830200 1938600 1588100 1323200 1418900 1252100 1621600 2 2 1 2 2 2 2 2 2 2 2 590850 1036500 21400 1126900 1267800 1312800 779720 743030 786330 744430 838780 550300 967500 78411 1146100 1204700 1313100 816630 784260 801530 727000 807520 1 1 1 1 1 1 1 1 1 1 1 686950 1160200 0 1106100 650070 583620 772400 526980 589820 538110 852330 639510 1082400 43723 1124400 625570 625510 771430 538990 617350 525090 814090 1 1 0 1 1 1 1 1 1 1 1 65363000 37775000 27588000 17400 1378 15988 88483;88484 107064;107065 107065 2 SLESLDTSLFAK Unmodified 1309.6765 0.67654718 1572 Q12874 SF3A3 Splicing factor 3A subunit 3 yes yes 0 0 0 0 By MS/MS By MS/MS 6 0.853 4 3 4 5 6 73.418 73.491 2;3 2.249E-15 23112 20211116_3434_TMUAki_TMT10x_P_F6 166.69 95.773 49414000 80206000 14559 80134000 55997000 79293000 55767000 49368000 48479000 49623000 58436000 46006000 74841000 3760500 81742000 53659000 80158000 56353000 51711000 49991000 48454000 56063000 8 8 1 8 8 8 8 8 8 8 8 36908000 60056000 14559 59078000 42320000 68112000 43966000 36657000 37354000 37689000 43186000 34363000 56035000 2923500 60473000 40606000 68124000 44306000 38889000 38498000 36766000 41479000 6 6 1 6 6 6 6 6 6 6 6 12506000 20150000 0 21056000 13677000 11180000 11801000 12710000 11124000 11934000 15250000 11642000 18806000 836990 21269000 13053000 12033000 12047000 12823000 11493000 11688000 14584000 2 2 0 2 2 2 2 2 2 2 2 4297700000 2399400000 1898400000 17401 1572 15989 88485;88486;88487;88488;88489;88490;88491;88492;88493;88494;88495 107066;107067;107068;107069;107070;107071;107072;107073;107074;107075;107076;107077;107078;107079 107071 14 SLESQVENLQK Unmodified 1273.6514 0.65139506 641 P12270 TPR Nucleoprotein TPR yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 50.028 50.191 3 3.0442E-12 14874 20211116_3442_TMUAki_TMT10x_S_F4 141.71 101.12 3687900 5794700 144900 6929100 7224200 7904500 5558500 4343100 3993600 3711500 4961900 3434900 5411300 490320 7003300 6893800 7912400 5676900 4576600 4165600 3650800 4756600 1 1 1 1 1 1 1 1 1 1 1 3687900 5794700 144900 6929100 7224200 7904500 5558500 4343100 3993600 3711500 4961900 3434900 5411300 490320 7003300 6893800 7912400 5676900 4576600 4165600 3650800 4756600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 375300000 375300000 0 17402 641 15990 88496;88497 107080;107081 107081 2 SLETEILESLK Unmodified 1260.6813 0.68129821 1080 P48681 NES Nestin yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.957 1 2 2 1 4 2 78.505 78.471 2 2.3645E-07 25681 20211116_3428_TMUAki_TMT10x_P_F1 140.07 96.992 29365000 48724000 153190 43188000 26902000 42504000 30844000 23018000 23552000 26322000 31291000 27340000 45444000 2161300 44440000 25878000 42905000 30855000 24485000 24554000 25571000 29946000 5 5 1 5 5 5 5 5 5 5 5 23134000 37452000 153190 33572000 18746000 35383000 23423000 17693000 18295000 20619000 23998000 21539000 34932000 1724900 34550000 18084000 35537000 23356000 18970000 19039000 20017000 22974000 4 4 1 4 4 4 4 4 4 4 4 6231500 11273000 0 9616500 8155700 7121400 7421400 5324600 5257400 5703000 7293400 5801200 10512000 436390 9890000 7794700 7368300 7499300 5515700 5515500 5554200 6972600 1 1 0 1 1 1 1 1 1 1 1 3579400000 2458300000 1121100000 17403 1080 15991 88498;88499;88500;88501;88502;88503 107082;107083;107084;107085;107086 107082 5 SLETENSALQLQVTER Unmodified 1816.9167 0.91667089 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.89 0.737 3 4 2 5 4 53.187 52.977 2;3 1.5051E-53 18338 20211116_3441_TMUAki_TMT10x_S_F3 276.32 236.53 14843000 25149000 68382 23109000 27416000 27278000 20074000 21190000 18383000 19009000 22262000 13820000 23459000 1420400 23781000 26104000 27395000 20694000 21787000 18913000 18655000 21356000 7 7 4 7 7 7 7 7 7 7 7 7003800 12030000 21670 10278000 19705000 20595000 14016000 9928100 7540000 8640500 11032000 6521200 11218000 751150 10763000 18751000 20105000 14314000 10594000 8078000 8491800 10534000 3 3 2 3 3 3 3 3 3 3 3 7839000 13119000 46712 12831000 7710800 6682800 6058500 11262000 10843000 10368000 11230000 7299100 12241000 669280 13018000 7353300 7290100 6379900 11193000 10835000 10163000 10822000 4 4 2 4 4 4 4 4 4 4 4 2555000000 1260500000 1294500000 17404 748 15992 88504;88505;88506;88507;88508;88509;88510;88511;88512 107087;107088;107089;107090;107091;107092;107093;107094 107093 8 SLETENSALQLQVTEREEVR Unmodified 2330.1714 0.17138202 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.17 1.07 4 4 2 2 6 6 50.074 49.953 3;4 1.9498E-118 14641 20211116_3442_TMUAki_TMT10x_S_F4 368.08 324.62 86710000 152080000 634150 146460000 154400000 214210000 133140000 169430000 169000000 140760000 142370000 80734000 141880000 7852400 150820000 147500000 213040000 137270000 173670000 169420000 138660000 138160000 23 23 13 23 23 23 23 23 23 23 23 57947000 99727000 244860 95263000 120680000 183840000 105530000 118740000 120920000 96545000 96449000 53950000 93039000 5114000 98824000 115300000 180350000 108320000 123350000 121480000 95205000 93798000 12 12 5 12 12 12 12 12 12 12 12 28763000 52352000 389290 51199000 33724000 30371000 27603000 50686000 48082000 44218000 45921000 26783000 48846000 2738400 52001000 32201000 32682000 28953000 50315000 47942000 43452000 44365000 11 11 8 11 11 11 11 11 11 11 11 35193000000 20771000000 14422000000 17405 748 15993 88513;88514;88515;88516;88517;88518;88519;88520;88521;88522;88523;88524 107095;107096;107097;107098;107099;107100;107101;107102;107103;107104;107105;107106;107107;107108;107109;107110;107111;107112;107113;107114;107115;107116;107117 107115 23 SLETVYLER Unmodified 1108.5764 0.57643921 1807 Q15435;Q15435-2 PPP1R7 Protein phosphatase 1 regulatory subunit 7 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 49.482 49.39 2 6.096E-06 14531 20211116_3442_TMUAki_TMT10x_S_F4 161.79 97.525 8313700 13772000 126240 16235000 10029000 10975000 8418500 12003000 12563000 11198000 12510000 7741700 12860000 814260 16310000 9582500 11528000 8751800 12128000 12597000 10970000 12070000 4 4 3 4 4 4 4 4 4 4 4 2079300 3229600 83518 3730200 4142300 4947400 3040100 2948100 3062800 2688100 2944100 1936700 3015400 279120 3788200 3949200 4920000 3142100 3090500 3110600 2636000 2843800 1 1 1 1 1 1 1 1 1 1 1 6234400 10542000 42723 12505000 5886800 6027900 5378400 9055200 9500100 8510100 9566100 5805000 9844200 535140 12522000 5633300 6608400 5609700 9037600 9486700 8333800 9226000 3 3 2 3 3 3 3 3 3 3 3 766290000 380970000 385320000 17406 1807 15994 88525;88526;88527;88528 107118;107119;107120;107121;107122 107122 5 SLEVILR Unmodified 828.5069 0.50690308 1716 Q14566 MCM6 DNA replication licensing factor MCM6 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 52.376 52.518 2 0.0029967 15636 20211116_3433_TMUAki_TMT10x_P_F5 120.65 19.903 23122000 33847000 0 39366000 28528000 31384000 23024000 23948000 23606000 23318000 26790000 21527000 31604000 1773400 39651000 27201000 32297000 23660000 24705000 24102000 22799000 25745000 6 6 0 6 6 6 6 6 6 6 6 12673000 18083000 0 21154000 18827000 22613000 13047000 13208000 12999000 12685000 14473000 11799000 16885000 975940 21386000 17896000 22735000 13535000 13888000 13278000 12411000 13916000 3 3 0 3 3 3 3 3 3 3 3 10449000 15764000 0 18212000 9701500 8771100 9977600 10740000 10607000 10632000 12318000 9729000 14719000 797480 18265000 9305400 9562000 10126000 10817000 10824000 10388000 11830000 3 3 0 3 3 3 3 3 3 3 3 2135400000 1164800000 970550000 17407 1716 15995 88529;88530;88531;88532;88533;88534 107123;107124;107125;107126;107127;107128 107124 6 SLEYCSTASIDSENPPDLNK Unmodified 2238.9951 0.99505714 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.957 1 2 2 1 4 2 57.183 57.025 3 5.6406E-25 17724 20211116_3442_TMUAki_TMT10x_S_F4 175.19 161.74 18269000 29165000 92200 30889000 21715000 26758000 17732000 21138000 21525000 21364000 23767000 17009000 27220000 1360300 31328000 20708000 27388000 18312000 21782000 21811000 20856000 22858000 8 8 1 8 8 8 8 8 8 8 8 9033600 13461000 0 13438000 12962000 19136000 10198000 10138000 10381000 10614000 11174000 8409600 12561000 600730 13796000 12346000 18941000 10494000 10776000 10581000 10347000 10755000 4 4 0 4 4 4 4 4 4 4 4 9235200 15704000 92200 17451000 8752500 7621900 7533700 11000000 11144000 10750000 12593000 8598900 14660000 759590 17533000 8361700 8446900 7817300 11006000 11230000 10509000 12103000 4 4 1 4 4 4 4 4 4 4 4 4281200000 2705200000 1576000000 17408 1433 15996 88535;88536;88537;88538;88539;88540 107129;107130;107131;107132;107133;107134;107135;107136;107137 107136 9 SLFDQAESSYR Unmodified 1301.5888 0.58879481 856 P29692-2 EEF1D Elongation factor 1-delta yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 50.2 50.348 2 2.3547E-05 14921 20211116_3442_TMUAki_TMT10x_S_F4 108.77 89.172 8556900 13752000 32069 14701000 13034000 14916000 10501000 12570000 12045000 10887000 11239000 7967200 12836000 751980 14934000 12433000 15129000 10832000 12848000 12157000 10702000 10867000 2 2 1 2 2 2 2 2 2 2 2 4872600 7989600 32069 7955500 9245400 11745000 7670400 7313700 6487800 5990900 6451000 4537100 7455000 495100 8175000 8827300 11632000 7826100 7620100 6650700 5905600 6224100 1 1 1 1 1 1 1 1 1 1 1 3684300 5762800 0 6745400 3788800 3170500 2831000 5256100 5557100 4896000 4787700 3430100 5381000 256880 6758600 3605600 3497300 3006100 5228000 5506800 4796600 4642400 1 1 0 1 1 1 1 1 1 1 1 465760000 319860000 145900000 17409 856 15997 88541;88542 107138;107139 107139 2 SLFDYFLTDLK Unmodified 1360.6915 0.69146896 2901 Q9NQ88 TIGAR Fructose-2,6-bisphosphatase TIGAR yes yes 0 0 0 0 By MS/MS 8 0 1 1 81.809 81.814 3 0.0014329 27161 20211116_3436_TMUAki_TMT10x_P_F8 75.819 49.193 559480 913350 0 800590 555050 983950 689870 558820 601980 689250 636070 520930 851830 0 827440 535600 981520 689990 593530 617470 667780 612540 1 1 0 1 1 1 1 1 1 1 1 559480 913350 0 800590 555050 983950 689870 558820 601980 689250 636070 520930 851830 0 827440 535600 981520 689990 593530 617470 667780 612540 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 94466000 94466000 0 17410 2901 15998 88543 107140 107140 1 SLFEQYGK Unmodified 970.476 0.47599688 2707 Q9BWF3;Q9BWF3-3;Q9BWF3-4;Q9BWF3-2;Q9BQ04 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 0 0 0 0 By MS/MS 6 0 1 1 53.053 53.152 2 0.0046765 14758 20211116_3434_TMUAki_TMT10x_P_F6 97.431 46.824 4432000 6471900 0 8469600 13456000 11534000 6089600 6320800 6755000 5414900 6239100 4126400 6046500 470560 8545100 12715000 11444000 6582700 6662500 6824600 5325800 6034600 1 1 0 1 1 1 1 1 1 1 1 4432000 6471900 0 8469600 13456000 11534000 6089600 6320800 6755000 5414900 6239100 4126400 6046500 470560 8545100 12715000 11444000 6582700 6662500 6824600 5325800 6034600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 438090000 438090000 0 17411 2707 15999 88544 107141 107141 1 SLFFPDEAINKHPR Unmodified 1669.8576 0.85763986 1074 P48506 GCLC Glutamate--cysteine ligase catalytic subunit yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 49.821 49.815 4 4.0237E-06 13516 20211116_3447_TMUAki_TMT10x_S_F8 107.37 81.935 3788700 6257200 87757 6220200 7647700 6902800 4472500 7102600 6651800 5912900 6279800 3528300 5838500 445260 6358500 7258100 6994500 4770100 7175800 6658500 5823800 6069500 2 2 1 2 2 2 2 2 2 2 2 1410300 2183100 0 2319700 4697500 4479900 2385300 2701800 2711600 2202400 2385700 1313000 2037600 158270 2389100 4445700 4390600 2550500 2821800 2732700 2171600 2311500 1 1 0 1 1 1 1 1 1 1 1 2378500 4074100 87757 3900500 2950200 2423000 2087200 4400800 3940300 3710400 3894200 2215300 3800900 286990 3969400 2812400 2604000 2219600 4354000 3925800 3652200 3758000 1 1 1 1 1 1 1 1 1 1 1 1433800000 764660000 669150000 17412 1074 16000 88545;88546 107142;107143 107143 2 SLFGSIGDIESCK Unmodified 1411.6653 0.66533057 1717 Q14576-2;Q14576 ELAVL3 ELAV-like protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 5.86 0.639 2 4 1 5 2 70.204 70.163 2;3 1.8517E-22 22130 20211116_3445_TMUAki_TMT10x_S_F6 205.56 166.26 14273000 23281000 232960 22565000 17070000 19093000 15875000 15386000 13795000 15907000 17347000 13291000 21721000 1415900 23019000 16350000 19581000 16100000 15846000 14251000 15514000 16624000 4 4 3 4 4 4 4 4 4 4 4 5883600 9715800 106310 9308800 6605200 10791000 7325100 6443700 5837200 6726700 7244000 5479000 9064300 596970 9547400 6357900 10804000 7346500 6779300 6053400 6558000 6944400 2 2 2 2 2 2 2 2 2 2 2 8389000 13565000 126660 13257000 10465000 8302000 8549400 8942000 7957500 9180100 10103000 7811700 12656000 818970 13472000 9992400 8777500 8753900 9066400 8197400 8956000 9679400 2 2 1 2 2 2 2 2 2 2 2 1723800000 803500000 920340000 17413 1717 16001 88547;88548;88549;88550;88551;88552;88553 107144;107145;107146;107147;107148;107149 107149 6 SLFGSIGEIESCK Unmodified 1425.681 0.68098063 815 P26378;P26378-4;P26378-2;P26378-5;P26378-1;P26378-3;Q12926;Q12926-2 ELAVL4;ELAVL2 ELAV-like protein 4;ELAV-like protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 5.4 1.08 4 4 4 3 7 8 70.168 70.23 2;3 1.4407E-29 22165 20211116_3445_TMUAki_TMT10x_S_F6 244.06 191.78 215380000 336800000 2329700 354070000 219100000 272220000 215480000 174010000 154660000 179210000 234610000 200550000 314340000 18955000 358770000 210060000 280160000 216870000 182030000 162830000 174810000 223840000 23 23 13 23 23 23 23 23 23 23 23 123400000 186910000 1132100 194490000 111760000 183720000 124670000 96179000 88504000 102160000 128580000 114900000 174440000 10562000 197710000 107520000 185860000 124670000 102390000 93042000 99530000 122790000 13 13 7 13 13 13 13 13 13 13 13 91984000 149890000 1197600 159580000 107330000 88500000 90801000 77827000 66152000 77051000 106030000 85650000 139900000 8392800 161050000 102540000 94302000 92205000 79645000 69792000 75284000 101050000 10 10 6 10 10 10 10 10 10 10 10 20498000000 10027000000 10472000000 17414 815 16002 88554;88555;88556;88557;88558;88559;88560;88561;88562;88563;88564;88565;88566;88567;88568 107150;107151;107152;107153;107154;107155;107156;107157;107158;107159;107160;107161;107162;107163;107164;107165;107166;107167;107168;107169;107170;107171;107172;107173 107171 24 SLFLGQK Unmodified 791.45414 0.45413923 327 O75367;O75367-2;O75367-3 H2AFY Core histone macro-H2A.1 yes no 0 0 0 0 By MS/MS By MS/MS 3.57 2.87 2 2 1 2 3 4 52.32 52.167 2 0.001446 14884 20211116_3428_TMUAki_TMT10x_P_F1 145.88 48.811 42728000 67322000 441690 74187000 80800000 75421000 50086000 61223000 62577000 52576000 64689000 39788000 62844000 4481200 75217000 76729000 76438000 52797000 62705000 63190000 51704000 62338000 8 8 6 8 8 8 8 8 8 8 8 26152000 40139000 226550 44122000 63906000 59948000 33762000 35923000 36899000 31024000 38914000 24352000 37469000 2906700 44967000 60532000 59555000 35919000 37590000 37473000 30501000 37477000 4 4 3 4 4 4 4 4 4 4 4 16576000 27183000 215130 30066000 16893000 15473000 16324000 25300000 25678000 21552000 25775000 15436000 25375000 1574500 30250000 16197000 16883000 16878000 25115000 25717000 21203000 24861000 4 4 3 4 4 4 4 4 4 4 4 3291700000 1689800000 1601900000 17415 327 16003 88569;88570;88571;88572;88573;88574;88575 107174;107175;107176;107177;107178;107179;107180;107181 107174 8 SLFNYHDTR Unmodified 1151.536 0.53597137 2965 Q9NVA2;Q9NVA2-2 SEPT11 Septin-11 yes no 0 0 0 0 By MS/MS 6 0 1 1 34.156 34.133 3 0.016039 6961 20211116_3434_TMUAki_TMT10x_P_F6 57.204 40.29 145170 256910 1606.2 275350 285720 300250 210210 158090 147200 149700 193320 135180 239790 15501 279970 272160 301140 215230 167660 154140 146550 185070 1 1 1 1 1 1 1 1 1 1 1 145170 256910 1606.2 275350 285720 300250 210210 158090 147200 149700 193320 135180 239790 15501 279970 272160 301140 215230 167660 154140 146550 185070 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16145000 16145000 0 17416 2965 16004 88576 107182 107182 1 SLFPGLETK Unmodified 990.5386 0.53859714 2537 Q96PZ0;Q96PZ0-2 PUS7 Pseudouridylate synthase 7 homolog yes no 0 0 0 0 By MS/MS 7 0 1 1 61.956 62.651 2 3.1697E-05 20452 20211116_3435_TMUAki_TMT10x_P_F7 113.71 74.744 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17417 2537 16005 88577 107183 107183 1 SLFSNVVTK Unmodified 993.5495 0.54949617 892 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 57.267 57.073 2 2.8617E-11 16841 20211116_3428_TMUAki_TMT10x_P_F1 234.81 180.6 51472000 80029000 875110 95767000 80938000 88130000 56341000 77229000 77362000 68952000 75895000 47932000 74734000 5484400 96472000 77041000 90007000 59086000 78823000 77731000 67683000 73258000 7 7 5 7 7 7 7 7 7 7 7 26094000 39076000 208760 47717000 56721000 66234000 36733000 38847000 38787000 35137000 37222000 24298000 36494000 2782300 48345000 53897000 65717000 38369000 40768000 39314000 34470000 35955000 3 3 2 3 3 3 3 3 3 3 3 25378000 40953000 666350 48050000 24217000 21897000 19608000 38382000 38575000 33815000 38673000 23634000 38240000 2702100 48127000 23145000 24290000 20717000 38056000 38417000 33214000 37303000 4 4 3 4 4 4 4 4 4 4 4 4828900000 2721100000 2107800000 17418 892 16006 88578;88579;88580;88581;88582;88583 107184;107185;107186;107187;107188;107189;107190;107191;107192 107184 9 SLFSSIGEVESAK Unmodified 1352.6824 0.68236084 1825 Q15717;Q15717-2 ELAVL1 ELAV-like protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.816 4 4 4 6 6 67.049 67.043 2;3 2.4739E-78 20492 20211116_3444_TMUAki_TMT10x_S_F5 346.01 251.9 97230000 159440000 1103200 155010000 108370000 155100000 112000000 117370000 115280000 115620000 124730000 90537000 148760000 9012700 158450000 104050000 157150000 113520000 121190000 117470000 112990000 120030000 16 16 12 16 16 16 16 16 16 16 16 55231000 84587000 665040 84512000 63257000 111410000 67046000 65587000 63793000 64765000 68715000 51429000 78928000 5129300 86623000 60778000 110810000 67709000 68972000 65216000 63287000 66134000 9 9 8 9 9 9 9 9 9 9 9 41999000 74858000 438130 70502000 45110000 43689000 44954000 51785000 51485000 50855000 56013000 39108000 69834000 3883400 71830000 43273000 46344000 45809000 52215000 52252000 49706000 53893000 7 7 4 7 7 7 7 7 7 7 7 11138000000 5740800000 5397100000 17419 1825 16007 88584;88585;88586;88587;88588;88589;88590;88591;88592;88593;88594;88595 107193;107194;107195;107196;107197;107198;107199;107200;107201;107202;107203;107204;107205;107206;107207;107208 107204 16 SLFVGHMDYK Oxidation (M) 1211.5645 0.56449431 2735 Q9BZE4;Q9BZE4-3;Q9BZE4-2 GTPBP4 Nucleolar GTP-binding protein 1 yes no 0 0 1 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 41.519 42.051 3 0.0079897 12245 20211116_3435_TMUAki_TMT10x_P_F7 61.353 44.78 4863500 7840300 32131 8935700 9113300 8303800 5852300 5941800 6399200 5263700 7100800 4528600 7319900 485790 9029000 8657800 8445300 6123700 6140100 6511100 5168700 6828200 4 4 3 4 4 4 4 4 4 4 4 2356900 3771500 0 4287200 6894600 6302500 3866900 3056900 3263300 2475500 3445400 2194500 3521100 252060 4367400 6534300 6223300 4062000 3254500 3352800 2441700 3318000 1 1 0 1 1 1 1 1 1 1 1 2506600 4068800 32131 4648500 2218700 2001400 1985400 2884900 3135900 2788200 3655500 2334200 3798800 233730 4661700 2123500 2222000 2061700 2885700 3158300 2727100 3510200 3 3 3 3 3 3 3 3 3 3 3 245610000 146640000 98966000 17420 2735 16008 88596;88597;88598;88599 107209;107210;107211;107212;107213;107214 107210 2925 6 SLGAEPLEVDLK Unmodified 1269.6816 0.68163256 1630 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 By MS/MS 4 0 1 1 63.678 63.53 2 1.8882E-07 20413 20211116_3442_TMUAki_TMT10x_S_F4 110.08 82.748 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17421 1630 16009 88600 107215 107215 1 SLGEEIQESLK Unmodified 1231.6296 0.62959699 1080 P48681 NES Nestin yes yes 0 0 0 0 By MS/MS 3 0 1 1 61.164 60.737 3 0.02603 21521 20211116_3441_TMUAki_TMT10x_S_F3 57.175 26.107 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17422 1080 16010 88601 107216 107216 1 SLGEIPIVESEIKK Unmodified 1540.8712 0.87122424 1206 P53618 COPB1 Coatomer subunit beta yes yes 0 0 0 1 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 63.783 63.79 3 1.4273E-06 20292 20211116_3433_TMUAki_TMT10x_P_F5 92.935 68.08 5749800 9373500 0 9830000 8511900 12573000 7102100 6772100 6958100 7125700 7696100 5352800 8748200 421840 10037000 8120100 12509000 7273200 7188700 7111200 6944700 7401300 1 1 0 1 1 1 1 1 1 1 1 5749800 9373500 0 9830000 8511900 12573000 7102100 6772100 6958100 7125700 7696100 5352800 8748200 421840 10037000 8120100 12509000 7273200 7188700 7111200 6944700 7401300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 656020000 656020000 0 17423 1206 16011 88602;88603;88604 107217;107218;107219 107217 3 SLGETQLVLYGDVEELK Unmodified 1891.9779 0.97787416 1536 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 0 By MS/MS 2 0 1 1 78.202 78.171 3 0.050665 25726 20211116_3440_TMUAki_TMT10x_S_F2 39.983 25.942 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17424 1536 16012 88605 107220 107220 1 SLGETQLVLYGDVEELKR Unmodified 2048.079 0.078985188 1536 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 73.322 73.332 3 1.2998E-22 23957 20211116_3431_TMUAki_TMT10x_P_F4 160.47 140.1 2377300 4263000 85629 3467400 3689500 4626800 3076500 5274900 3741700 4018300 3992400 2214200 3974800 295280 3610800 3527400 4656500 3173300 5292900 3786300 3976300 3843600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2377300 4263000 85629 3467400 3689500 4626800 3076500 5274900 3741700 4018300 3992400 2214200 3974800 295280 3610800 3527400 4656500 3173300 5292900 3786300 3976300 3843600 1 1 1 1 1 1 1 1 1 1 1 435830000 0 435830000 17425 1536 16013 88606;88607 107221;107222 107221 2 SLGLQLPDGQR Unmodified 1182.6357 0.63568542 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 51.586 51.744 2 0.0001253 14498 20211116_3445_TMUAki_TMT10x_S_F6 94.363 64.521 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17426 157 16014 88608;88609 107223;107224 107224 2 SLGLQLPDGQRR Unmodified 1338.7368 0.73679645 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 1 By MS/MS By MS/MS 5.67 3.3 1 2 2 1 41.754 41.872 3 0.00011851 10769 20211116_3428_TMUAki_TMT10x_P_F1 95.417 73.362 10994000 16307000 173180 19536000 19967000 17537000 12667000 13063000 13909000 11731000 16232000 10237000 15228000 1023800 19672000 18961000 17888000 13269000 13467000 14178000 11512000 15586000 6 6 4 6 6 6 6 6 6 6 6 8002200 11225000 110270 14095000 17098000 15032000 9556000 9512400 10355000 8628600 12072000 7450200 10485000 718870 14191000 16200000 15132000 10112000 9923700 10561000 8463500 11592000 4 4 2 4 4 4 4 4 4 4 4 2992100 5081600 62910 5440500 2869100 2505000 3111200 3550500 3553900 3102500 4159800 2786400 4743000 304970 5480900 2760900 2756500 3156800 3543800 3617600 3048500 3994100 2 2 2 2 2 2 2 2 2 2 2 629750000 511910000 117840000 17427 157 16015 88610;88611;88612 107225;107226;107227;107228;107229;107230 107225 6 SLGLSDEEIVK Unmodified 1188.6238 0.62378333 3064 Q9P2J5;Q9P2J5-2 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS 4 0 1 1 55.733 55.884 2 5.4944E-07 16782 20211116_3431_TMUAki_TMT10x_P_F4 107.21 54.035 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17428 3064 16016 88613 107231 107231 1 SLGPDVPELIILPVYSALPSEMQTR Oxidation (M) 2740.4357 0.43571855 1715 Q14562 DHX8 ATP-dependent RNA helicase DHX8 yes yes 0 0 1 0 By MS/MS 6.5 0.5 1 1 2 81.138 81.142 3 0.0014239 28291 20211116_3435_TMUAki_TMT10x_P_F7 58.054 53.947 1086200 1696900 6918.6 1706300 949750 1850000 1217500 992330 1006300 1126100 1355900 1011300 1583400 77142 1742200 916680 1856500 1214400 1056200 1045400 1094300 1297200 2 2 1 2 2 2 2 2 2 2 2 1086200 1696900 6918.6 1706300 949750 1850000 1217500 992330 1006300 1126100 1355900 1011300 1583400 77142 1742200 916680 1856500 1214400 1056200 1045400 1094300 1297200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1049800000 1049800000 0 17429 1715 16017 88614;88615 107232;107233 107233 2304 2 SLGPDVPELIILPVYSALPSEMQTR Unmodified 2724.4408 0.44080393 1715 Q14562 DHX8 ATP-dependent RNA helicase DHX8 yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 81.792 81.822 3 5.8843E-23 29000 20211116_3446_TMUAki_TMT10x_S_F7 152.13 141.3 326970 524790 0 601060 486840 352450 426260 242620 213500 234960 420330 304360 489970 18937 604080 464610 371920 428950 251990 233850 229790 399080 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 326970 524790 0 601060 486840 352450 426260 242620 213500 234960 420330 304360 489970 18937 604080 464610 371920 428950 251990 233850 229790 399080 1 1 0 1 1 1 1 1 1 1 1 260260000 0 260260000 17430 1715 16017 88616;88617 107234;107235 107235 2 SLGPPQGEEDSVPR Unmodified 1466.7001 0.70013617 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 4 2 2 4 38.141 38.001 2;3 9.5895E-72 10780 20211116_3429_TMUAki_TMT10x_P_F2 324.67 254.86 4807000 7253600 325310 8264500 7789000 9808800 5825000 5977900 7368100 5200900 6936500 4478200 6772200 734340 8382900 7438200 9811200 6059000 6248000 7412900 5111500 6704700 5 5 3 5 5 5 5 5 5 5 5 3659200 5388000 307360 5978800 6619100 8680600 4825600 4483700 5505600 3881900 5108500 3409300 5029800 631270 6098000 6320200 8582300 5009600 4752500 5557100 3816100 4940300 2 2 2 2 2 2 2 2 2 2 2 1147900 1865600 17954 2285800 1170000 1128200 999430 1494200 1862500 1319000 1828000 1068900 1742400 103070 2284900 1118000 1229000 1049400 1495500 1855800 1295400 1764500 3 3 1 3 3 3 3 3 3 3 3 324390000 185750000 138640000 17431 1433 16018 88618;88619;88620;88621;88622;88623 107236;107237;107238;107239;107240 107236 5 SLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 2 Oxidation (M) 4100.8289 0.82892638 599 P0DP25;P0DP24;P0DP23 yes no 0 0 2 0 By MS/MS By MS/MS 1.5 0.5 2 2 3 1 81.286 81.28 4 2.6691E-11 28020 20211116_3429_TMUAki_TMT10x_P_F2 92.01 89.312 1587500 2624600 63015 2155100 1616000 2860400 1725900 1291800 1376600 1467600 1897200 1478600 2447300 156320 2242300 1556100 2835300 1734100 1397900 1434200 1426100 1814100 3 3 2 3 3 3 3 3 3 3 3 1215900 1830800 63015 1515700 986310 2370300 1273000 966410 1033300 1153300 1397600 1132600 1707200 156320 1581300 956750 2330400 1268900 1059000 1074600 1118700 1336900 2 2 2 2 2 2 2 2 2 2 2 371580 793820 0 639370 629720 490150 452860 325430 343260 314340 499670 345980 740140 0 660940 599360 504830 465210 338850 359550 307460 477170 1 1 0 1 1 1 1 1 1 1 1 4053400000 3307200000 746260000 17432 599 16019 88624;88625;88626;88627 107241;107242;107243 107242 581;582;583 3 SLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 3 Oxidation (M) 4116.8238 0.823841 599 P0DP25;P0DP24;P0DP23 yes no 0 0 3 0 By MS/MS 2.33 0.471 2 1 3 80.083 80.047 3;4 0.00063873 28239 20211116_3430_TMUAki_TMT10x_P_F3 51.152 49.384 2338300 4190700 25726 3195200 2224700 5661900 2990700 4658300 5064700 4601800 4059500 2177300 3906600 139070 3366800 2153700 5593300 3057800 4785200 5026000 4496700 3947200 4 4 1 4 4 4 4 4 4 4 4 2338300 4190700 25726 3195200 2224700 5661900 2990700 4658300 5064700 4601800 4059500 2177300 3906600 139070 3366800 2153700 5593300 3057800 4785200 5026000 4496700 3947200 4 4 1 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9164200000 9164200000 0 17433 599 16019 88628;88629;88630 107244;107245;107246;107247 107247 581;582;583 4 SLGTADVHFER Unmodified 1230.5993 0.59929991 2113 Q86V81 ALYREF THO complex subunit 4 yes yes 0 0 0 0 By MS/MS By MS/MS 4.65 1.88 2 3 4 9 2 7 6 1 19 15 31.86 31.899 2;3 2.8275E-15 11867 20211116_3441_TMUAki_TMT10x_S_F3 195.85 156.71 30603000 45096000 314300 51634000 53091000 47520000 30375000 32668000 35615000 30817000 38986000 28494000 42104000 2891400 52152000 50338000 48330000 32161000 33909000 36122000 30174000 37504000 41 41 18 41 41 41 41 41 41 41 41 19106000 27789000 294640 31076000 42947000 38316000 20113000 20430000 22193000 19730000 24075000 17791000 25942000 2056000 31579000 40615000 38186000 21660000 21654000 22553000 19299000 23166000 24 24 13 24 24 24 24 24 24 24 24 11496000 17307000 19654 20558000 10144000 9203400 10262000 12238000 13422000 11087000 14911000 10703000 16161000 835420 20573000 9723100 10144000 10501000 12255000 13569000 10876000 14338000 17 17 5 17 17 17 17 17 17 17 17 9782900000 6370100000 3412800000 17434 2113 16020 88631;88632;88633;88634;88635;88636;88637;88638;88639;88640;88641;88642;88643;88644;88645;88646;88647;88648;88649;88650;88651;88652;88653;88654;88655;88656;88657;88658;88659;88660;88661;88662;88663;88664 107248;107249;107250;107251;107252;107253;107254;107255;107256;107257;107258;107259;107260;107261;107262;107263;107264;107265;107266;107267;107268;107269;107270;107271;107272;107273;107274;107275;107276;107277;107278;107279;107280;107281;107282;107283;107284;107285;107286;107287;107288;107289;107290;107291;107292;107293;107294 107278 47 SLGTGAPVIESPYGETISPEDAPESISK Unmodified 2830.376 0.37601465 907 P33240;P33240-2 CSTF2 Cleavage stimulation factor subunit 2 yes no 0 0 0 0 By MS/MS 4 0 1 1 71.884 71.73 4 8.6226E-09 23806 20211116_3442_TMUAki_TMT10x_S_F4 82.849 69.662 3248400 5643800 50175 5142200 4701300 3943900 4082400 4140100 4288000 4220100 4359100 3024900 5264400 332070 5263400 4495000 4096100 4179700 4201900 4355800 4118200 4202900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3248400 5643800 50175 5142200 4701300 3943900 4082400 4140100 4288000 4220100 4359100 3024900 5264400 332070 5263400 4495000 4096100 4179700 4201900 4355800 4118200 4202900 2 2 1 2 2 2 2 2 2 2 2 463840000 0 463840000 17435 907 16021 88665 107295;107296 107296 2 SLGTIQQCCDAIDHLCR Unmodified 2045.9081 0.90811358 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 51.54 51.688 3 2.0807E-60 14196 20211116_3444_TMUAki_TMT10x_S_F5 277.94 268.84 21999000 38563000 174340 43936000 33948000 38395000 26177000 28735000 25243000 26591000 32249000 20483000 36004000 1983500 44360000 32355000 39239000 26930000 29639000 25970000 26059000 30893000 12 12 5 12 12 12 12 12 12 12 12 11790000 20288000 145890 23041000 24581000 29956000 18726000 15927000 13744000 14257000 16753000 10979000 18941000 1214600 23415000 23426000 29776000 19146000 16852000 14307000 13993000 16068000 6 6 3 6 6 6 6 6 6 6 6 10209000 18276000 28452 20895000 9366500 8438400 7451400 12808000 11499000 12335000 15496000 9504800 17063000 768870 20945000 8928600 9463000 7783700 12787000 11663000 12066000 14825000 6 6 2 6 6 6 6 6 6 6 6 5242800000 3006200000 2236600000 17436 1433 16022 88666;88667;88668;88669;88670;88671 107297;107298;107299;107300;107301;107302;107303;107304;107305;107306;107307;107308 107304 12 SLGTQPPKK Unmodified 954.54983 0.54983053 1740 Q14978;Q14978-2;Q14978-3 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 32.231 32.247 3 5.3199E-05 8813 20211116_3439_TMUAki_TMT10x_S_F1 101.38 57.573 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17437 1740 16023 88672;88673 107309;107310 107310 2 SLGVDMDDKDDAHYAVQAR Oxidation (M) 2120.9433 0.94329634 2735 Q9BZE4;Q9BZE4-3;Q9BZE4-2 GTPBP4 Nucleolar GTP-binding protein 1 yes no 0 0 1 1 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 37.719 37.792 4 3.6228E-08 9473 20211116_3431_TMUAki_TMT10x_P_F4 102.79 91.834 1358000 2079800 1485.7 3193900 5196800 3798200 2182100 2205100 2705500 1482800 2290100 1264300 1944800 147090 3188700 4905900 3796300 2387200 2300800 2714700 1477900 2222100 2 2 1 2 2 2 2 2 2 2 2 1212800 1871500 0 2911900 5066000 3716500 2063700 2110000 2608100 1387900 2121800 1129100 1750200 133870 2909200 4780700 3700400 2267100 2204700 2612200 1385200 2061900 1 1 0 1 1 1 1 1 1 1 1 145200 208230 1485.7 282010 130850 81624 118400 95140 97384 94926 168360 135200 194570 13222 279490 125240 95817 120100 96043 102510 92719 160220 1 1 1 1 1 1 1 1 1 1 1 324770000 303660000 21111000 17438 2735 16024 88674;88675;88676 107311;107312 107311 2926 2 SLGYAYVNFQQPADAER Unmodified 1927.9064 0.90644055 634;1619 P11940;P11940-2;Q13310;Q13310-2;Q13310-3 PABPC1;PABPC4 Polyadenylate-binding protein 1;Polyadenylate-binding protein 4 no no 0 0 0 0 By MS/MS By MS/MS 5.6 1.08 3 4 4 4 7 8 59.791 60.018 2;3 2.3153E-80 17587 20211116_3444_TMUAki_TMT10x_S_F5 319.29 283.33 127390000 212600000 950950 227490000 162590000 183920000 130230000 166190000 148860000 145670000 170620000 118610000 198430000 10654000 230380000 155060000 189650000 134370000 169250000 151400000 143120000 163920000 19 19 9 19 19 19 19 19 19 19 19 53477000 88876000 622370 95957000 84712000 124020000 72629000 72047000 66163000 63102000 73635000 49794000 82957000 5119500 97811000 80938000 123440000 74103000 75608000 67857000 61997000 70802000 10 10 4 10 10 10 10 10 10 10 10 73911000 123720000 328580 131540000 77879000 59901000 57604000 94141000 82699000 82570000 96985000 68813000 115470000 5534600 132570000 74122000 66211000 60267000 93642000 83541000 81119000 93116000 9 9 5 9 9 9 9 9 9 9 9 21298000000 11354000000 9943700000 17439 634;1619 16025 88677;88678;88679;88680;88681;88682;88683;88684;88685;88686;88687;88688;88689;88690;88691 107313;107314;107315;107316;107317;107318;107319;107320;107321;107322;107323;107324;107325;107326;107327;107328;107329;107330;107331;107332 107326 20 SLHDAIMIVR Oxidation (M) 1169.6227 0.62267789 2609 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 1 0 By MS/MS By MS/MS 5.91 2.02 2 1 2 4 2 4 7 41.923 42.121 2;3 3.8536E-05 12340 20211116_3446_TMUAki_TMT10x_S_F7 104.2 64.13 6606000 10501000 307580 12929000 9338500 9628900 7327500 8337500 8840200 7476600 9587500 6152800 9807800 830440 12969000 8919500 9983800 7584600 8516400 8953700 7337500 9225600 12 12 9 12 12 12 12 12 12 12 12 2460800 3818100 58592 4556500 5637700 5696500 3199500 3223000 3386000 2827200 3584700 2291500 3565400 279990 4613300 5346400 5677300 3378700 3389900 3443600 2777500 3451800 4 4 3 4 4 4 4 4 4 4 4 4145200 6683100 248990 8372200 3700800 3932400 4128000 5114600 5454200 4649400 6002900 3861300 6242300 550450 8355400 3573100 4306500 4205900 5126600 5510200 4560000 5773800 8 8 6 8 8 8 8 8 8 8 8 1104500000 662010000 442500000 17440 2609 16026 88692;88693;88694;88695;88696;88697;88698;88699;88700;88701;88702 107333;107334;107335;107336;107337;107338;107339;107340;107341;107342;107343;107344;107345 107344 2855 13 SLHDAIMIVR Unmodified 1153.6278 0.62776327 2609 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 47.089 47.616 3 2.8094E-10 14371 20211116_3435_TMUAki_TMT10x_P_F7 166.07 127.32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17441 2609 16026 88703;88704 107346;107347 107346 2 SLHDALCVIR Unmodified 1182.6179 0.61792687 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 0 By MS/MS By MS/MS 5.07 2.52 1 4 3 4 2 7 7 45.385 45.501 3 1.0893E-06 13892 20211116_3435_TMUAki_TMT10x_P_F7 148.73 0 21334000 32773000 128790 36910000 30573000 33703000 22045000 25171000 24036000 23350000 26950000 19863000 30596000 1832200 37314000 29096000 34341000 22869000 25968000 24469000 22880000 25907000 16 16 7 16 16 16 16 16 16 16 16 11930000 17168000 65948 20319000 21987000 25715000 13822000 13169000 12763000 13062000 14895000 11108000 16031000 1092100 20587000 20874000 25582000 14415000 14020000 13106000 12761000 14303000 7 7 3 7 7 7 7 7 7 7 7 9403600 15605000 62842 16591000 8586200 7988200 8223100 12001000 11273000 10288000 12054000 8755500 14565000 740090 16727000 8221900 8758700 8454400 11948000 11362000 10119000 11604000 9 9 4 9 9 9 9 9 9 9 9 3172800000 1751700000 1421100000 17442 1079 16027 88705;88706;88707;88708;88709;88710;88711;88712;88713;88714;88715;88716;88717;88718 107348;107349;107350;107351;107352;107353;107354;107355;107356;107357;107358;107359;107360;107361;107362;107363;107364;107365 107355 18 SLHDALCVLAQTVK Unmodified 1553.8236 0.82356254 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 2.82 0.984 2 3 9 2 1 5 12 70.849 70.781 2;3 2.8201E-31 28006 20211116_3441_TMUAki_TMT10x_S_F3 218.62 181.28 86262000 136230000 273300 142420000 92447000 125480000 92115000 73264000 71477000 85532000 97982000 80317000 127140000 5672300 144600000 88622000 127700000 92814000 77492000 74559000 83030000 93699000 13 13 6 13 13 13 13 13 13 13 13 40438000 59197000 115980 64851000 40479000 72942000 43834000 33941000 32404000 38254000 43084000 37652000 55258000 1980500 65880000 38898000 72933000 43933000 36607000 33845000 37183000 41231000 5 5 3 5 5 5 5 5 5 5 5 45825000 77030000 157310 77565000 51969000 52536000 48281000 39322000 39073000 47278000 54897000 42666000 71879000 3691800 78717000 49725000 54767000 48881000 40885000 40714000 45846000 52468000 8 8 3 8 8 8 8 8 8 8 8 16518000000 8414200000 8103400000 17443 1429 16028 88719;88720;88721;88722;88723;88724;88725;88726;88727;88728;88729;88730;88731;88732;88733;88734;88735 107366;107367;107368;107369;107370;107371;107372;107373;107374;107375;107376;107377;107378;107379;107380;107381;107382;107383;107384 107379 19 SLHDALCVVK Unmodified 1140.5961 0.59612879 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 47.307 47.789 3 0.00034539 14955 20211116_3446_TMUAki_TMT10x_S_F7 97.456 80.089 3695400 6246900 22769 6855400 3573800 4043400 3340200 5743400 5896400 5094800 5689800 3440900 5831300 321680 6908600 3422000 4330800 3479500 5734300 5879400 5002600 5495100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3695400 6246900 22769 6855400 3573800 4043400 3340200 5743400 5896400 5094800 5689800 3440900 5831300 321680 6908600 3422000 4330800 3479500 5734300 5879400 5002600 5495100 2 2 1 2 2 2 2 2 2 2 2 119620000 0 119620000 17444 712 16029 88736;88737 107385;107386;107387 107386 3 SLHDALCVVKR Unmodified 1296.6972 0.69723982 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 1 By MS/MS By MS/MS 1.75 0.433 1 3 3 1 42.362 42.279 3;4 3.2764E-11 10896 20211116_3428_TMUAki_TMT10x_P_F1 162.38 133.42 2373300 3425000 27610 3997600 4733500 5256300 2417100 2752800 2919500 2813100 2989600 2210000 3198000 255550 4056600 4482100 5220900 2588400 2927000 2950600 2744900 2881800 3 3 3 3 3 3 3 3 3 3 3 1743100 2512700 17878 2944100 4118000 4658200 1915000 2059700 2162600 2107900 2182700 1623200 2346200 194440 2998600 3894200 4581400 2065300 2226700 2190000 2056700 2105000 2 2 2 2 2 2 2 2 2 2 2 630160 912320 9732.5 1053500 615550 598060 502040 693150 756830 705200 806910 586810 851820 61110 1058000 587950 639490 523070 700310 760580 688230 776850 1 1 1 1 1 1 1 1 1 1 1 395900000 306190000 89709000 17445 712 16030 88738;88739;88740;88741 107388;107389;107390;107391 107388 4 SLHHPNIVGYR Unmodified 1291.6786 0.67855329 2510 Q96KB5;Q96KB5-2 PBK Lymphokine-activated killer T-cell-originated protein kinase yes no 0 0 0 0 By MS/MS 4 0 1 1 31.138 31.172 4 0.03681 6888 20211116_3431_TMUAki_TMT10x_P_F4 48.741 26.695 148780 230110 5467.6 238550 269100 267460 172550 134300 163820 146970 187370 138570 214750 19115 243200 255930 267690 179810 143640 167870 143020 180020 1 1 1 1 1 1 1 1 1 1 1 148780 230110 5467.6 238550 269100 267460 172550 134300 163820 146970 187370 138570 214750 19115 243200 255930 267690 179810 143640 167870 143020 180020 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14128000 14128000 0 17446 2510 16031 88742 107392 107392 1 SLHQAIEGDTSGDFLK Unmodified 1716.8319 0.83187862 548 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 51.307 51.694 3 0.01269 16045 20211116_3435_TMUAki_TMT10x_P_F7 47.113 26.45 2241200 4039500 100590 4247800 3678400 5626800 3178300 3773000 2890300 2870700 3933600 2087500 3770100 299690 4339300 3520500 5605500 3241100 3902700 2990000 2840900 3762300 1 1 1 1 1 1 1 1 1 1 1 2241200 4039500 100590 4247800 3678400 5626800 3178300 3773000 2890300 2870700 3933600 2087500 3770100 299690 4339300 3520500 5605500 3241100 3902700 2990000 2840900 3762300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 294350000 294350000 0 17447 548 16032 88743;88744 107393 107393 1 SLHTLFGDELCK Unmodified 1418.6864 0.68640036 38 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS 6.1 1.37 2 1 3 2 2 6 4 57.692 57.89 2;3 3.0167E-22 16720 20211116_3434_TMUAki_TMT10x_P_F6 213.34 179.46 + 66760000 93760000 552480 94785000 98685000 110090000 74899000 118420000 123210000 114150000 91454000 62161000 87492000 6064800 96853000 94032000 111400000 78713000 119850000 122110000 111660000 89206000 10 10 4 10 10 10 10 10 10 10 10 42012000 58578000 353650 59291000 66571000 92690000 57147000 65984000 67656000 65103000 55273000 39117000 54662000 3834100 60935000 63595000 91766000 58785000 68410000 67930000 63620000 53704000 6 6 2 6 6 6 6 6 6 6 6 24748000 35182000 198840 35494000 32114000 17403000 17752000 52431000 55555000 49046000 36181000 23044000 32830000 2230700 35917000 30436000 19632000 19928000 51440000 54176000 48040000 35502000 4 4 2 4 4 4 4 4 4 4 4 9957500000 5742700000 4214800000 17448 38 16033 88745;88746;88747;88748;88749;88750;88751;88752;88753;88754 107394;107395;107396;107397;107398;107399;107400;107401;107402;107403;107404;107405 107398 12 SLIANLAAANCYKK Unmodified 1535.813 0.81299786 1241 P55263;P55263-3;P55263-4;P55263-2 ADK Adenosine kinase yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 57.675 57.829 3 1.7361E-06 17806 20211116_3433_TMUAki_TMT10x_P_F5 114.74 89.689 20588000 34573000 92313 37420000 38567000 44894000 26914000 32148000 30089000 26271000 30322000 19170000 32271000 2040300 38086000 36693000 44987000 28008000 33153000 30480000 25899000 29243000 4 4 3 4 4 4 4 4 4 4 4 16050000 26019000 92313 28459000 32617000 40795000 23214000 24770000 23049000 20244000 23062000 14945000 24288000 1648700 29045000 31044000 40438000 24034000 25857000 23456000 19958000 22247000 3 3 3 3 3 3 3 3 3 3 3 4537500 8553700 0 8961800 5950800 4099000 3700100 7378400 7040400 6026200 7259200 4224800 7983100 391560 9041000 5649100 4549400 3974300 7295800 7024000 5941200 6995900 1 1 0 1 1 1 1 1 1 1 1 1556900000 990340000 566590000 17449 1241 16034 88755;88756;88757;88758 107406;107407;107408;107409;107410 107407 5 SLIEEGGDWDRR Unmodified 1431.6743 0.67425577 1750 Q15008;Q15008-4;Q15008-3;Q15008-2 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 0 0 0 1 By MS/MS By MS/MS 3 0.707 1 2 1 1 3 42.765 42.76 3 2.864E-13 12886 20211116_3430_TMUAki_TMT10x_P_F3 179.35 147.88 3270100 5370100 76270 6836100 3795100 3035900 3075000 3870100 3809500 3556000 5205300 3045300 5016300 349550 6813600 3625400 3345900 3179500 3883400 3892900 3485900 4978200 4 4 4 4 4 4 4 4 4 4 4 450340 681430 3494.6 877240 1267900 1023000 806610 431850 451530 387250 674620 419340 636580 52043 883280 1204300 1019900 831310 467580 482800 380050 643880 1 1 1 1 1 1 1 1 1 1 1 2819700 4688600 72775 5958900 2527200 2012800 2268300 3438300 3358000 3168700 4530700 2626000 4379700 297500 5930300 2421100 2326000 2348100 3415800 3410100 3105800 4334300 3 3 3 3 3 3 3 3 3 3 3 318680000 135680000 183000000 17450 1750 16035 88759;88760;88761;88762 107411;107412;107413;107414 107411 4 SLIFPNFEPLHK Unmodified 1440.7765 0.776536 3298 Q9Y4F1;Q9Y4F1-2 FARP1 FERM, RhoGEF and pleckstrin domain-containing protein 1 yes no 0 0 0 0 By MS/MS 2 0 1 1 70.169 69.885 3 1.4358E-05 23722 20211116_3429_TMUAki_TMT10x_P_F2 101.39 83.59 3089700 4918900 0 4709200 2628100 4804700 3280900 2832300 2496800 2875000 3370200 2876700 4589100 236640 4820400 2535500 4844500 3269600 2980500 2605300 2806100 3224100 1 1 0 1 1 1 1 1 1 1 1 3089700 4918900 0 4709200 2628100 4804700 3280900 2832300 2496800 2875000 3370200 2876700 4589100 236640 4820400 2535500 4844500 3269600 2980500 2605300 2806100 3224100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 621760000 621760000 0 17451 3298 16036 88763 107415 107415 1 SLIGVEYKPVSATGAEDK Unmodified 1862.9626 0.96255845 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 1 By MS/MS By MS/MS 6.2 0.748 1 2 2 2 3 53.397 53.67 3 3.0436E-31 14939 20211116_3434_TMUAki_TMT10x_P_F6 188.26 149.75 23541000 37671000 481220 49731000 36132000 32217000 24371000 20740000 26165000 23104000 31106000 21922000 35196000 2576500 49620000 34379000 33643000 25391000 21737000 26715000 22467000 29854000 6 6 6 6 6 6 6 6 6 6 6 11214000 17230000 144840 23335000 26779000 24050000 15425000 9560800 13174000 11019000 14165000 10442000 16101000 1282700 23385000 25400000 24131000 16170000 10496000 13536000 10701000 13634000 3 3 3 3 3 3 3 3 3 3 3 12327000 20440000 336370 26396000 9353500 8167200 8946500 11179000 12990000 12085000 16940000 11481000 19095000 1293900 26235000 8978700 9512300 9221300 11242000 13179000 11766000 16220000 3 3 3 3 3 3 3 3 3 3 3 2231900000 1514800000 717180000 17452 542 16037 88764;88765;88766;88767;88768 107416;107417;107418;107419;107420;107421;107422 107416 7 SLIPSYIR Unmodified 947.54402 0.54401687 742;743 P20340;Q9NRW1;Q9NRW1-2;P20340-2;P20340-4 RAB6A;RAB6B Ras-related protein Rab-6A;Ras-related protein Rab-6B no no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 54.367 54.27 2 0.0042834 15778 20211116_3428_TMUAki_TMT10x_P_F1 93.992 55.155 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17453 742;743 16038 88769;88770 107423;107424 107423 2 SLIVEGK Unmodified 744.43815 0.43815481 942 P35659 DEK Protein DEK yes yes 0 0 0 0 By matching By MS/MS 4 0.816 1 1 1 1 2 42.763 42.892 2 0.057104 10679 20211116_3444_TMUAki_TMT10x_S_F5 65.252 0.21431 6610000 11480000 0 13325000 5863000 5648300 5667400 7974800 8498300 7749700 9890600 6154200 10719000 501430 13349000 5614500 6279900 5846500 7984100 8571100 7578000 9498000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6610000 11480000 0 13325000 5863000 5648300 5667400 7974800 8498300 7749700 9890600 6154200 10719000 501430 13349000 5614500 6279900 5846500 7984100 8571100 7578000 9498000 2 2 0 2 2 2 2 2 2 2 2 146640000 11379000 135260000 17454 942 16039 88771;88772;88773 107425;107426 107426 2 SLKDEDVLQKLPVGTTATLYFR Unmodified 2493.3479 0.34788983 3027 Q9NZ01 TECR Very-long-chain enoyl-CoA reductase yes yes 0 0 0 2 By MS/MS 2 0 1 1 72.935 72.822 4 1.5286E-07 23607 20211116_3440_TMUAki_TMT10x_S_F2 97.352 88.306 13807000 25003000 219910 19755000 21769000 20093000 19166000 16374000 12850000 15364000 19484000 12857000 23311000 1399500 20529000 20817000 20365000 19381000 16805000 13584000 15047000 18590000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13807000 25003000 219910 19755000 21769000 20093000 19166000 16374000 12850000 15364000 19484000 12857000 23311000 1399500 20529000 20817000 20365000 19381000 16805000 13584000 15047000 18590000 2 2 1 2 2 2 2 2 2 2 2 1061800000 0 1061800000 17455 3027 16040 88774 107427;107428 107428 2 SLKPGALSNSESIPTIDGLR Unmodified 2054.1008 0.10078326 439 O95630;O95630-2 STAMBP STAM-binding protein yes no 0 0 0 1 By MS/MS 8 0 1 1 59.436 59.428 3 8.3218E-09 17401 20211116_3447_TMUAki_TMT10x_S_F8 104.52 94.375 4895800 8469700 8385.4 7993400 5924600 4687900 5077400 7183900 6773400 5871700 6299000 4558600 7901400 428120 8138800 5660000 5035700 5247000 7138900 6799700 5788700 6091100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4895800 8469700 8385.4 7993400 5924600 4687900 5077400 7183900 6773400 5871700 6299000 4558600 7901400 428120 8138800 5660000 5035700 5247000 7138900 6799700 5788700 6091100 2 2 2 2 2 2 2 2 2 2 2 411420000 0 411420000 17456 439 16041 88775 107429;107430 107429 2 SLKSGDAAIVEMVPGK Unmodified 1600.8494 0.84944294 1520 Q05639 EEF1A2 Elongation factor 1-alpha 2 yes yes 0 0 0 1 By MS/MS 3 0 1 1 30.617 30.59 3 0.0794 8280 20211116_3430_TMUAki_TMT10x_P_F3 34.612 14.774 195410 300060 7298.2 285020 201610 327060 194550 172110 179860 196820 214670 182000 279940 23089 292450 193580 327110 197260 183550 184860 191210 206010 1 1 1 1 1 1 1 1 1 1 1 195410 300060 7298.2 285020 201610 327060 194550 172110 179860 196820 214670 182000 279940 23089 292450 193580 327110 197260 183550 184860 191210 206010 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4233100 4233100 0 17457 1520 16042 88776 107431 107431 1 SLLCGEDEAADENPESQEMLEEQLVR Oxidation (M) 3006.307 0.30702516 2852 Q9HAV4 XPO5 Exportin-5 yes yes 0 0 1 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 68.742 68.618 3 2.9285E-12 23590 20211116_3439_TMUAki_TMT10x_S_F1 109.91 103.11 13448000 22822000 494220 24066000 15329000 24830000 17008000 22146000 23719000 21466000 20519000 12525000 21300000 1601900 24475000 14770000 25188000 17372000 22632000 23723000 20993000 19893000 5 5 5 5 5 5 5 5 5 5 5 6584100 10093000 239900 11403000 7372000 15984000 9564800 10693000 11332000 10056000 9479000 6132200 9422700 780480 11609000 7138300 15882000 9642000 11120000 11385000 9847600 9201400 2 2 2 2 2 2 2 2 2 2 2 6864200 12729000 254330 12663000 7956900 8846500 7443600 11453000 12387000 11410000 11040000 6393100 11877000 821420 12866000 7632000 9306200 7730200 11512000 12337000 11146000 10692000 3 3 3 3 3 3 3 3 3 3 3 2515000000 985300000 1529700000 17458 2852 16043 88777;88778;88779 107432;107433;107434;107435;107436 107434 2979 5 SLLDACESR Unmodified 1049.4812 0.48115861 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS 4 0 1 1 37.39 37.548 2 0.093412 9809 20211116_3442_TMUAki_TMT10x_S_F4 57.249 26.513 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17459 1475 16044 88780 107437 107437 1 SLLEGLLQR Unmodified 1027.6026 0.60259438 798 P25098;P35626 ADRBK1;ADRBK2 Beta-adrenergic receptor kinase 1;Beta-adrenergic receptor kinase 2 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 69.79 69.871 2 2.0392E-05 21716 20211116_3447_TMUAki_TMT10x_S_F8 145.65 105.3 6417800 10014000 0 9808400 6578500 11104000 7533300 5433000 5917200 5575500 7380400 5975000 9343200 462450 10040000 6327100 11105000 7541400 5814400 6142400 5439400 7074300 1 1 0 1 1 1 1 1 1 1 1 6417800 10014000 0 9808400 6578500 11104000 7533300 5433000 5917200 5575500 7380400 5975000 9343200 462450 10040000 6327100 11105000 7541400 5814400 6142400 5439400 7074300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 667150000 667150000 0 17460 798 16045 88781;88782 107438;107439 107439 2 SLLELAR Unmodified 800.4756 0.47560295 1091 P49321;P49321-3;P49321-2 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 0 By MS/MS By MS/MS 5.11 1.45 2 1 2 2 2 4 5 51.786 51.938 2 0.0047993 16660 20211116_3446_TMUAki_TMT10x_S_F7 111.65 45.751 25666000 38948000 495880 45781000 41911000 44615000 29164000 37846000 37335000 32597000 36973000 23900000 36368000 2675700 46205000 39887000 45371000 30502000 38663000 37612000 32053000 35678000 7 7 4 7 7 7 7 7 7 7 7 15784000 23413000 495880 28082000 31494000 36573000 20833000 23946000 23600000 20237000 23121000 14700000 21864000 1990700 28445000 29960000 36451000 21775000 24873000 23871000 19917000 22319000 4 4 4 4 4 4 4 4 4 4 4 9882200 15536000 0 17700000 10417000 8041600 8331500 13899000 13735000 12360000 13852000 9200200 14504000 684960 17759000 9926600 8919600 8727400 13790000 13741000 12135000 13359000 3 3 0 3 3 3 3 3 3 3 3 9331800000 4762900000 4568900000 17461 1091 16046 88783;88784;88785;88786;88787;88788;88789;88790;88791 107440;107441;107442;107443;107444;107445;107446 107446 7 SLLFVNTLER Unmodified 1190.6659 0.66592292 3015 Q9NY93;Q9NY93-2 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 0 0 0 0 By MS/MS 8 0 1 1 65.886 65.832 2 0.010094 20062 20211116_3447_TMUAki_TMT10x_S_F8 67.207 20.14 4113900 7311600 5084.5 5973300 4745100 4778700 4263000 6147600 4929500 5302100 6054900 3830500 6817500 354650 6170400 4538000 4972600 4370000 6156100 5025700 5213100 5806100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4113900 7311600 5084.5 5973300 4745100 4778700 4263000 6147600 4929500 5302100 6054900 3830500 6817500 354650 6170400 4538000 4972600 4370000 6156100 5025700 5213100 5806100 1 1 1 1 1 1 1 1 1 1 1 491320000 0 491320000 17462 3015 16047 88792 107447 107447 1 SLLGAEVPFTK Unmodified 1160.6441 0.64412484 3389 yes no 0 0 0 0 By MS/MS 7 0 1 1 59.87 60.376 3 0.067312 20030 20211116_3446_TMUAki_TMT10x_S_F7 36.417 14.331 + 768080 1363700 25047 1177600 858860 763590 750900 1073000 920290 832200 987200 715350 1271700 88294 1208300 822320 810390 772560 1068100 931200 822690 950240 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 768080 1363700 25047 1177600 858860 763590 750900 1073000 920290 832200 987200 715350 1271700 88294 1208300 822320 810390 772560 1068100 931200 822690 950240 1 1 1 1 1 1 1 1 1 1 1 273730000 0 273730000 17463 3389 16048 88793 107448 107448 1 SLLGDPLQALPPSAAPTGPLLAPPAGATLNR Acetyl (Protein N-term) 3017.655 0.65497088 3099 Q9UDY8;Q9UDY8-2 MALT1 Mucosa-associated lymphoid tissue lymphoma translocation protein 1 yes no 1 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 82.543 82.547 3 1.018E-10 27418 20211116_3436_TMUAki_TMT10x_P_F8 66.479 54.399 425550 779480 13442 1000800 490620 598270 519490 442850 410480 482750 1082500 396330 728170 48720 999360 471970 630820 522060 459300 446210 469840 1023500 3 3 3 3 3 3 3 3 3 3 3 266150 450090 11521 630600 277410 416250 311680 279080 249440 303350 707770 247890 420650 32960 627360 267550 434190 312430 291400 272750 295270 668570 2 2 2 2 2 2 2 2 2 2 2 159410 329390 1921.5 370230 213210 182020 207820 163770 161030 179400 374760 148440 307510 15760 372000 204420 196630 209630 167900 173450 174570 354900 1 1 1 1 1 1 1 1 1 1 1 104440000 72158000 32284000 17464 3099 16049 88794;88795 107449;107450;107451 107449 3 SLLGGNIR Unmodified 828.48175 0.48175096 437 O95573 ACSL3 Long-chain-fatty-acid--CoA ligase 3 yes yes 0 0 0 0 By matching By MS/MS 1 0 2 1 1 40.543 40.47 2 0.004299 12155 20211116_3439_TMUAki_TMT10x_S_F1 98.523 33.766 773090 1242600 25753 1582900 676700 644760 668420 868930 837190 828170 1116100 720010 1160800 86745 1576800 650200 719740 683660 870940 854210 810510 1068000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 773090 1242600 25753 1582900 676700 644760 668420 868930 837190 828170 1116100 720010 1160800 86745 1576800 650200 719740 683660 870940 854210 810510 1068000 1 1 1 1 1 1 1 1 1 1 1 42041000 25931000 16110000 17465 437 16050 88796;88797 107452 107452 1 SLLGKDVLFLK Unmodified 1231.754 0.75400964 473 P00558;P00558-2;P07205 PGK1;PGK2 Phosphoglycerate kinase 1;Phosphoglycerate kinase 2 yes no 0 0 0 1 By MS/MS By MS/MS 2.6 1.02 1 1 2 1 4 1 77.684 77.566 2;3 1.1868E-13 25958 20211116_3441_TMUAki_TMT10x_S_F3 147.91 104.88 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17466 473 16051 88798;88799;88800;88801;88802 107453;107454;107455;107456;107457 107457 5 SLLIGVFK Unmodified 875.54804 0.54803961 3062;2868 Q9P2D1;Q3L8U1;Q8TD26;Q8TD26-3;Q3L8U1-2;Q3L8U1-3;Q9HCK8;Q9HCK8-2 CHD7;CHD9;CHD6;CHD8 Chromodomain-helicase-DNA-binding protein 7;Chromodomain-helicase-DNA-binding protein 9;Chromodomain-helicase-DNA-binding protein 6;Chromodomain-helicase-DNA-binding protein 8 no no 0 0 0 0 By MS/MS 4 0 1 1 73.089 72.955 2 0.00041147 24273 20211116_3442_TMUAki_TMT10x_S_F4 141.78 94.715 3358700 5206800 43068 4855100 3855500 2977100 3483400 2797900 2797300 3148100 3713800 3127600 4857200 325550 4949700 3690100 3144700 3531600 2864200 2908300 3060200 3554200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3358700 5206800 43068 4855100 3855500 2977100 3483400 2797900 2797300 3148100 3713800 3127600 4857200 325550 4949700 3690100 3144700 3531600 2864200 2908300 3060200 3554200 1 1 1 1 1 1 1 1 1 1 1 346980000 0 346980000 17467 3062;2868 16052 88803 107458 107458 1 SLLINAVEASCIR Unmodified 1444.7708 0.77079869 902 P32322;P32322-2;P32322-3;Q96C36 PYCR1;PYCR2 Pyrroline-5-carboxylate reductase 1, mitochondrial;Pyrroline-5-carboxylate reductase 2 yes no 0 0 0 0 By MS/MS By MS/MS 5.18 3.19 4 3 4 6 5 67.275 67.332 2;3 3.3525E-44 20595 20211116_3447_TMUAki_TMT10x_S_F8 291.71 198.61 45749000 76230000 94888 66078000 51392000 70349000 53099000 47882000 39504000 44309000 57483000 42596000 71093000 2385200 68191000 49310000 70899000 53351000 49710000 41422000 43421000 54895000 10 10 3 10 10 10 10 10 10 10 10 29198000 45873000 28243 40212000 27321000 49731000 32013000 28448000 23796000 27194000 35744000 27186000 42784000 995090 41565000 26310000 49597000 31973000 29961000 24992000 26610000 34111000 5 5 1 5 5 5 5 5 5 5 5 16551000 30357000 66645 25866000 24071000 20618000 21086000 19434000 15708000 17115000 21738000 15410000 28310000 1390100 26626000 22999000 21301000 21378000 19750000 16430000 16811000 20784000 5 5 2 5 5 5 5 5 5 5 5 12540000000 6098700000 6441200000 17468 902 16053 88804;88805;88806;88807;88808;88809;88810;88811;88812;88813;88814 107459;107460;107461;107462;107463;107464;107465;107466;107467;107468;107469 107468 11 SLLKPLELELQK Unmodified 1409.8494 0.84936659 1894 Q4G148;Q4G148-2 GXYLT1 Glucoside xylosyltransferase 1 yes no 0 0 0 1 By MS/MS 8 0 1 1 69.672 69.754 3 0.0014508 22184 20211116_3436_TMUAki_TMT10x_P_F8 69.456 54.484 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17469 1894 16054 88815 107470 107470 1 SLLLNPHLR Unmodified 1061.6346 0.63456321 1822 Q15649 ZNHIT3 Zinc finger HIT domain-containing protein 3 yes yes 0 0 0 0 By MS/MS By matching 3 0 2 1 1 43.115 42.975 3 0.00058634 13072 20211116_3430_TMUAki_TMT10x_P_F3 96.331 37.655 411830 693810 17476 710770 936050 1045900 675580 641200 633890 601500 668560 383590 647460 57772 728910 892040 1035700 697600 671160 647930 589090 643870 2 2 2 2 2 2 2 2 2 2 2 411830 693810 17476 710770 936050 1045900 675580 641200 633890 601500 668560 383590 647460 57772 728910 892040 1035700 697600 671160 647930 589090 643870 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 58702000 22240000 36462000 17470 1822 16055 88816;88817 107471;107472 107471 2 SLLLSVNAR Unmodified 971.57638 0.57637963 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 0 By MS/MS By MS/MS 3.62 1.32 2 2 2 1 1 3 5 49.958 49.947 2 0.00080714 14713 20211116_3442_TMUAki_TMT10x_S_F4 111.39 86.873 44855000 68674000 377560 98224000 89401000 73175000 52480000 52760000 61788000 48900000 65443000 41766000 64191000 4529900 97743000 84806000 75632000 55451000 54558000 62581000 47917000 63018000 7 7 5 7 7 7 7 7 7 7 7 23423000 35527000 9546.6 52365000 73135000 56814000 35283000 28332000 33574000 24910000 35203000 21808000 33214000 2482400 52298000 69163000 56964000 37715000 30141000 34288000 24469000 33909000 3 3 1 3 3 3 3 3 3 3 3 21432000 33147000 368020 45859000 16266000 16361000 17197000 24428000 28215000 23990000 30240000 19958000 30977000 2047500 45445000 15642000 18668000 17736000 24417000 28293000 23448000 29109000 4 4 4 4 4 4 4 4 4 4 4 3264400000 1719900000 1544500000 17471 1730 16056 88818;88819;88820;88821;88822;88823;88824;88825 107473;107474;107475;107476;107477;107478;107479;107480 107478 8 SLLNKPK Acetyl (Protein N-term) 840.5069 0.50690308 1354 P62316 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes yes 1 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 43.353 43.575 2 0.0061609 11475 20211116_3436_TMUAki_TMT10x_P_F8 54.525 21.405 14352000 24388000 139750 22553000 21634000 24082000 15988000 16355000 16664000 14598000 20613000 13364000 22750000 1422100 23160000 20610000 24266000 16533000 16966000 17064000 14329000 19762000 3 3 3 3 3 3 3 3 3 3 3 9432400 15202000 125130 14434000 17123000 19486000 11283000 11087000 11183000 9708900 13992000 8783500 14183000 1006300 14855000 16279000 19351000 11747000 11655000 11481000 9539000 13411000 2 2 2 2 2 2 2 2 2 2 2 4919300 9185800 14621 8119300 4510500 4596100 4704900 5268200 5481200 4888900 6620600 4580400 8567400 415740 8305700 4330700 4914600 4786300 5311100 5582700 4790400 6351400 1 1 1 1 1 1 1 1 1 1 1 998600000 814010000 184590000 17472 1354 16057 88826;88827;88828 107481;107482;107483 107482 3 SLLNVSR Unmodified 787.4552 0.45520186 2516 Q96M27;Q96M27-3;Q96M27-2 PRRC1 Protein PRRC1 yes no 0 0 0 0 By MS/MS 7 0 1 1 37.38 37.818 2 0.047755 10464 20211116_3435_TMUAki_TMT10x_P_F7 70.332 20.762 811140 1227700 0 1206400 1103700 1176200 743110 654270 683620 623250 909700 755230 1145500 68889 1231800 1049000 1188400 770780 690630 706090 609980 870560 1 1 0 1 1 1 1 1 1 1 1 811140 1227700 0 1206400 1103700 1176200 743110 654270 683620 623250 909700 755230 1145500 68889 1231800 1049000 1188400 770780 690630 706090 609980 870560 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25780000 25780000 0 17473 2516 16058 88829 107484 107484 1 SLLQALNEVK Unmodified 1113.6394 0.63937381 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS By MS/MS 7.8 0.4 1 4 2 3 70.233 70.296 2;3 6.7335E-14 21900 20211116_3447_TMUAki_TMT10x_S_F8 222.3 159.58 17505000 30382000 8684.5 30258000 22770000 26011000 20763000 22839000 21882000 21807000 24811000 16299000 28349000 1445500 30813000 21778000 26689000 21200000 23350000 22316000 21341000 23844000 3 3 1 3 3 3 3 3 3 3 3 6248900 10165000 0 10053000 9334100 13974000 8775400 7960200 7520800 7877600 8443000 5818100 9485100 525900 10322000 8933600 13859000 8891600 8394400 7738700 7697000 8116100 1 1 0 1 1 1 1 1 1 1 1 11257000 20217000 8684.5 20205000 13436000 12037000 11987000 14879000 14361000 13930000 16368000 10481000 18864000 919610 20491000 12844000 12830000 12308000 14956000 14577000 13643000 15728000 2 2 1 2 2 2 2 2 2 2 2 2735300000 1291000000 1444300000 17474 1695 16059 88830;88831;88832;88833;88834 107485;107486;107487;107488;107489 107488 5 SLLQQLENVTK Unmodified 1271.7085 0.70851601 3209 Q9UPN9;Q9UPN9-2 TRIM33 E3 ubiquitin-protein ligase TRIM33 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 72.403 72.678 2 1.7059E-14 25179 20211116_3446_TMUAki_TMT10x_S_F7 162.26 122.64 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17475 3209 16060 88835;88836 107490;107491 107491 2 SLLSAEEAAK Unmodified 1017.5342 0.53424004 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 46.643 46.591 2 5.6457E-14 13381 20211116_3442_TMUAki_TMT10x_S_F4 224.86 141.25 5347800 8318300 1518.2 10369000 9154800 6911400 5688000 8525500 9824000 6598700 9063300 4979200 7769500 478240 10382000 8689700 7290500 6078900 8529000 9786300 6524000 8766600 3 3 1 3 3 3 3 3 3 3 3 1404800 2119900 0 2765900 5009600 3517600 1905300 1974000 2450400 1602400 2190800 1308000 1980500 160260 2787300 4724900 3502500 2111800 2073800 2459800 1580300 2121400 1 1 0 1 1 1 1 1 1 1 1 3943000 6198400 1518.2 7603200 4145200 3393800 3782700 6551500 7373600 4996300 6872500 3671300 5789000 317980 7594400 3964700 3788000 3967100 6455200 7326500 4943700 6645200 2 2 1 2 2 2 2 2 2 2 2 354880000 129950000 224940000 17476 2048 16061 88837;88838;88839 107492;107493;107494 107494 3 SLLSIPNTDYIQLLSEIAK Unmodified 2117.162 0.16198654 347 O75569;O75569-3;O75569-2 PRKRA Interferon-inducible double-stranded RNA-dependent protein kinase activator A yes no 0 0 0 0 By MS/MS 2 0 1 1 82.195 82.184 3 4.1661E-06 27376 20211116_3440_TMUAki_TMT10x_S_F2 85.146 73.706 3282000 5241900 33251 5009400 3639900 3993800 4130300 2758900 2688400 3303100 3533100 3055500 4890300 230130 5111600 3499400 4103500 4119200 2883700 2828100 3203600 3382100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3282000 5241900 33251 5009400 3639900 3993800 4130300 2758900 2688400 3303100 3533100 3055500 4890300 230130 5111600 3499400 4103500 4119200 2883700 2828100 3203600 3382100 2 2 1 2 2 2 2 2 2 2 2 160470000 0 160470000 17477 347 16062 88840 107495;107496 107495 2 SLLSNLDEVKK Unmodified 1244.6976 0.69761697 2301 Q8WUM4;Q8WUM4-2 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 1 By MS/MS 6 0 1 1 55.654 55.741 3 2.0066E-07 15795 20211116_3434_TMUAki_TMT10x_P_F6 107.53 87.433 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17478 2301 16063 88841 107497 107497 1 SLLTYGR Unmodified 808.4443 0.44430282 891 P31930 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5 3.29 2 1 2 2 3 41.798 41.81 2 0.0022154 10737 20211116_3428_TMUAki_TMT10x_P_F1 128.48 86.982 5163300 7553600 57377 9044400 10452000 9124900 5760100 6049700 6435700 5245900 6825900 4807900 7053900 543290 9122700 9906200 9221800 6108900 6282100 6531500 5156600 6572600 5 5 4 5 5 5 5 5 5 5 5 4458800 6428400 50119 7637100 9785200 8546200 5101700 5241000 5562700 4519500 5857100 4151800 6002900 478650 7719300 9267000 8576000 5434000 5473900 5649400 4443700 5641000 4 4 3 4 4 4 4 4 4 4 4 704580 1125200 7258.6 1407300 666410 578670 658350 808720 872990 726390 968850 656090 1051000 64645 1403400 639220 645800 674860 808180 882130 712830 931650 1 1 1 1 1 1 1 1 1 1 1 204840000 164800000 40035000 17479 891 16064 88842;88843;88844;88845;88846 107498;107499;107500;107501;107502;107503;107504 107498 7 SLLVIPNTLAVNAAQDSTDLVAK Unmodified 2352.29 0.2900406 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 By MS/MS By MS/MS 6.74 2.14 3 3 7 14 14 13 74.777 74.779 2;3;4 1.1965E-77 27568 20211116_3435_TMUAki_TMT10x_P_F7 273.38 247.37 141510000 246460000 575970 225260000 179560000 216750000 181330000 136780000 136310000 144520000 181980000 131760000 229890000 6995400 231170000 172190000 219540000 182450000 143340000 142260000 140830000 174130000 38 38 12 38 38 38 38 38 38 38 38 65995000 112890000 338750 104120000 68925000 123070000 77367000 63526000 62998000 67351000 85044000 61448000 105310000 3151600 107120000 66303000 122870000 77591000 67708000 65501000 65621000 81357000 19 19 7 19 19 19 19 19 19 19 19 75517000 133570000 237230 121140000 110640000 93681000 103970000 73253000 73309000 77170000 96933000 70311000 124590000 3843800 124050000 105890000 96670000 104860000 75627000 76759000 75207000 92776000 19 19 5 19 19 19 19 19 19 19 19 85970000000 43734000000 42236000000 17480 712 16065 88847;88848;88849;88850;88851;88852;88853;88854;88855;88856;88857;88858;88859;88860;88861;88862;88863;88864;88865;88866;88867;88868;88869;88870;88871;88872;88873 107505;107506;107507;107508;107509;107510;107511;107512;107513;107514;107515;107516;107517;107518;107519;107520;107521;107522;107523;107524;107525;107526;107527;107528;107529;107530;107531;107532;107533;107534;107535;107536;107537;107538;107539;107540;107541;107542;107543;107544;107545;107546 107507 42 SLLVNPEGPTLMR Oxidation (M) 1441.7599 0.75989966 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 1 0 By MS/MS By MS/MS 6.22 0.786 2 3 4 3 6 53.357 53.704 2;3 1.5359E-05 15277 20211116_3445_TMUAki_TMT10x_S_F6 102.42 81.123 23899000 40820000 67448 42581000 29885000 37384000 23765000 53372000 43717000 36823000 36556000 22251000 38096000 1664400 43238000 28491000 38764000 25044000 52962000 43347000 36645000 35486000 8 8 3 8 8 8 8 8 8 8 8 7882600 12686000 5943.8 13812000 14670000 22508000 10381000 20734000 15614000 12841000 12293000 7337900 11841000 554880 14141000 13946000 22354000 10916000 20934000 15538000 12867000 11961000 3 3 1 3 3 3 3 3 3 3 3 16016000 28135000 61504 28770000 15215000 14876000 13384000 32637000 28103000 23981000 24263000 14913000 26255000 1109600 29097000 14545000 16411000 14127000 32028000 27810000 23778000 23524000 5 5 2 5 5 5 5 5 5 5 5 8267600000 3203600000 5064000000 17481 1092 16066 88874;88875;88876;88877;88878;88879;88880;88881;88882 107547;107548;107549;107550;107551;107552;107553;107554 107551 1433 8 SLLVNPEGPTLMR Unmodified 1425.765 0.76498503 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 7.11 0.737 2 4 3 5 4 60.607 61.045 2;3 9.9845E-36 18586 20211116_3436_TMUAki_TMT10x_P_F8 261.49 208.32 36351000 56910000 71400 61044000 37041000 39787000 36741000 24182000 20806000 24704000 38231000 33845000 53119000 2933800 61665000 35503000 41493000 36791000 25389000 22482000 24105000 36341000 6 6 3 6 6 6 6 6 6 6 6 21192000 32237000 71400 34586000 21220000 28916000 23422000 14134000 12447000 15052000 21909000 19732000 30090000 1764800 35033000 20402000 29475000 23303000 15144000 13479000 14663000 20842000 4 4 3 4 4 4 4 4 4 4 4 15159000 24673000 0 26458000 15821000 10871000 13319000 10047000 8359300 9651400 16322000 14114000 23029000 1169100 26633000 15101000 12017000 13487000 10245000 9003700 9442300 15499000 2 2 0 2 2 2 2 2 2 2 2 6340300000 3327400000 3013000000 17482 1092 16066 88883;88884;88885;88886;88887;88888;88889;88890;88891 107555;107556;107557;107558;107559;107560;107561;107562;107563 107559 9 SLLVPDHVITR Unmodified 1248.719 0.71902112 824 P27144 AK4 Adenylate kinase 4, mitochondrial yes yes 0 0 0 0 By matching By MS/MS 6.33 0.471 2 1 1 2 45.546 45.665 3 0.0094651 12031 20211116_3445_TMUAki_TMT10x_S_F6 59.975 41.815 2269000 3721600 3651.2 3720100 2090000 1920500 1988100 2934900 2620400 2501500 3069300 2112700 3472600 189010 3768300 2001700 2090300 2041500 2919800 2654000 2460900 2946900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2269000 3721600 3651.2 3720100 2090000 1920500 1988100 2934900 2620400 2501500 3069300 2112700 3472600 189010 3768300 2001700 2090300 2041500 2919800 2654000 2460900 2946900 1 1 1 1 1 1 1 1 1 1 1 198750000 75097000 123650000 17483 824 16067 88892;88893;88894 107564;107565 107564 2 SLLVQTK Unmodified 787.48035 0.48035398 975 P39023 RPL3 60S ribosomal protein L3 yes yes 0 0 0 0 By MS/MS By MS/MS 6.2 2.64 1 2 2 2 3 43.032 43.173 2 0.0013 10767 20211116_3447_TMUAki_TMT10x_S_F8 139.14 57.274 12564000 19864000 0 22734000 14020000 14057000 12547000 13310000 13666000 11449000 15959000 11699000 18546000 1042000 22860000 13405000 14839000 12839000 13514000 13935000 11258000 15324000 4 4 0 4 4 4 4 4 4 4 4 4243100 6491400 0 7638100 6914000 7955500 5797100 4511600 4658800 3755600 5559000 3950700 6061500 380860 7715900 6600900 8007600 5903400 4738300 4821300 3699100 5334700 1 1 0 1 1 1 1 1 1 1 1 8321400 13373000 0 15096000 7105900 6101700 6749900 8798000 9007400 7693400 10400000 7747900 12485000 661090 15144000 6803800 6831300 6935200 8776100 9114100 7559300 9989800 3 3 0 3 3 3 3 3 3 3 3 711860000 232550000 479310000 17484 975 16068 88895;88896;88897;88898;88899 107566;107567;107568;107569;107570 107570 5 SLLVTELGSSR Unmodified 1160.6401 0.6401021 849 P29218;P29218-3 IMPA1 Inositol monophosphatase 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 54.295 54.4 2 9.2388E-15 15614 20211116_3445_TMUAki_TMT10x_S_F6 194.94 145.58 3674800 6350100 40182 6699000 3737300 3449200 3149700 5842900 5462900 4599500 5673400 3421900 5926600 342990 6760800 3571100 3768100 3297200 5782600 5463800 4543300 5466400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3674800 6350100 40182 6699000 3737300 3449200 3149700 5842900 5462900 4599500 5673400 3421900 5926600 342990 6760800 3571100 3768100 3297200 5782600 5463800 4543300 5466400 1 1 1 1 1 1 1 1 1 1 1 280880000 0 280880000 17485 849 16069 88900;88901;88902 107571;107572;107573 107572 3 SLMEQDVKENEALLLR Unmodified 1886.9772 0.97716265 2406 Q96AC1;Q96AC1-2;Q96AC1-3 FERMT2 Fermitin family homolog 2 yes no 0 0 0 1 By MS/MS 2 0 1 1 64.448 64.15 3 1.9961E-10 21418 20211116_3429_TMUAki_TMT10x_P_F2 124.26 102.03 3589100 5503300 64154 4756600 4059600 5782900 4835400 2773600 2007300 2939300 4265200 3342200 5132400 363940 4920600 3915900 5760300 4776600 2976900 2245900 2863800 4044600 1 1 1 1 1 1 1 1 1 1 1 3589100 5503300 64154 4756600 4059600 5782900 4835400 2773600 2007300 2939300 4265200 3342200 5132400 363940 4920600 3915900 5760300 4776600 2976900 2245900 2863800 4044600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 449310000 449310000 0 17486 2406 16070 88903 107574 107574 1 SLMEQDVKENEALLLR Oxidation (M) 1902.9721 0.97207728 2406 Q96AC1;Q96AC1-2;Q96AC1-3 FERMT2 Fermitin family homolog 2 yes no 0 0 1 1 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 55.465 55.538 3 6.0705E-05 17092 20211116_3442_TMUAki_TMT10x_S_F4 82.922 70.776 4775800 8746400 0 7641700 6078800 5626000 4474900 10444000 10286000 9134700 8519900 4446500 8157200 384090 7843700 5786300 5964000 4802800 10337000 10147000 8975400 8273500 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4775800 8746400 0 7641700 6078800 5626000 4474900 10444000 10286000 9134700 8519900 4446500 8157200 384090 7843700 5786300 5964000 4802800 10337000 10147000 8975400 8273500 2 2 0 2 2 2 2 2 2 2 2 847510000 0 847510000 17487 2406 16070 88904;88905;88906 107575;107576;107577 107576 2730 3 SLMSADNVR Oxidation (M) 1007.4706 0.47059393 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 1 0 By MS/MS 3 0 1 1 30.301 30.039 2 0.0012394 9073 20211116_3441_TMUAki_TMT10x_S_F3 86.136 43.069 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17488 196 16071 88907 107578 107578 150 1 SLNAASAMGPAPLISTPPSRPPQVK Oxidation (M) 2502.3264 0.32644288 1488 Q01826;Q01826-2 SATB1 DNA-binding protein SATB1 yes no 0 0 1 1 By MS/MS By matching 3 0 2 1 1 52.182 51.935 4 1.4241E-22 16840 20211116_3430_TMUAki_TMT10x_P_F3 146.75 132.14 3106000 5268000 0 5509800 4475800 6761400 4085600 3800900 4441500 3463800 3905200 2891900 4916500 114870 5622600 4280900 6744300 4175600 4003800 4483800 3396800 3783800 2 2 0 2 2 2 2 2 2 2 2 3106000 5268000 0 5509800 4475800 6761400 4085600 3800900 4441500 3463800 3905200 2891900 4916500 114870 5622600 4280900 6744300 4175600 4003800 4483800 3396800 3783800 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 753470000 368280000 385190000 17489 1488 16072 88908;88909 107579;107580 107579 2021 2 SLNDLIEER Unmodified 1087.551 0.55095274 2510 Q96KB5;Q96KB5-2 PBK Lymphokine-activated killer T-cell-originated protein kinase yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 53.968 53.588 2 0.00065489 18588 20211116_3441_TMUAki_TMT10x_S_F3 115.82 68.168 2975400 5026400 0 6013900 2553600 2568200 2481100 4500000 4611600 3859200 4626700 2770400 4693900 234470 6013900 2446300 2872300 2586500 4458600 4598800 3795500 4462700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2975400 5026400 0 6013900 2553600 2568200 2481100 4500000 4611600 3859200 4626700 2770400 4693900 234470 6013900 2446300 2872300 2586500 4458600 4598800 3795500 4462700 1 1 0 1 1 1 1 1 1 1 1 184920000 0 184920000 17490 2510 16073 88910;88911;88912 107581;107582;107583 107583 3 SLNILTAFQK Unmodified 1133.6445 0.64445919 858 P30040 ERP29 Endoplasmic reticulum resident protein 29 yes yes 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 2 4 4 6 4 75.273 75.179 2;3 2.7861E-10 25776 20211116_3429_TMUAki_TMT10x_P_F2 178.08 91.452 35471000 62735000 292220 54765000 49307000 65210000 42620000 50161000 47294000 42726000 50345000 33028000 58508000 3308800 56588000 47121000 65450000 43726000 51537000 48017000 42035000 48471000 11 11 7 11 11 11 11 11 11 11 11 17606000 30384000 148080 26699000 25978000 44888000 25075000 25028000 23356000 21087000 24869000 16394000 28338000 1714300 27770000 24895000 44161000 25428000 26331000 23889000 20757000 23943000 5 5 4 5 5 5 5 5 5 5 5 17865000 32351000 144140 28066000 23329000 20322000 17546000 25133000 23938000 21640000 25475000 16634000 30171000 1594500 28819000 22226000 21289000 18298000 25206000 24128000 21278000 24528000 6 6 3 6 6 6 6 6 6 6 6 5651500000 2961400000 2690100000 17491 858 16074 88913;88914;88915;88916;88917;88918;88919;88920;88921;88922 107584;107585;107586;107587;107588;107589;107590;107591;107592;107593;107594;107595;107596 107584 13 SLNNQFASFIDK Unmodified 1382.683 0.68302954 40 P04264;CON__P04264;CON__ENSEMBL:ENSBTAP00000038253 KRT1 Keratin, type II cytoskeletal 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.6 0.49 2 3 3 2 68.297 68.482 2;3 8.2586E-12 21676 20211116_3436_TMUAki_TMT10x_P_F8 135.99 82.66 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17492 40 16075 88923;88924;88925;88926;88927 107597;107598;107599;107600;107601 107599 5 SLPEEDVAEIQHAEEFLIKPESK Unmodified 2637.3174 0.31737756 294 O60832;O60832-2 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 0 0 0 1 By MS/MS By MS/MS 2 1.07 3 2 1 1 3 4 76.848 76.794 4;5 4.3683E-57 24953 20211116_3428_TMUAki_TMT10x_P_F1 233.28 216.57 46610000 78991000 631950 68477000 54112000 72980000 60015000 47254000 51589000 51406000 57848000 43402000 73668000 3823800 70668000 52061000 73491000 60307000 49467000 53074000 50034000 55610000 7 7 4 7 7 7 7 7 7 7 7 26259000 40886000 586900 37347000 26290000 47076000 30919000 22040000 25288000 25779000 30039000 24454000 38138000 2724500 38495000 25360000 46795000 30946000 23784000 26141000 25023000 28830000 3 3 3 3 3 3 3 3 3 3 3 20351000 38105000 45053 31131000 27822000 25903000 29096000 25214000 26301000 25626000 27809000 18947000 35530000 1099300 32173000 26700000 26696000 29361000 25683000 26933000 25011000 26779000 4 4 1 4 4 4 4 4 4 4 4 15327000000 7913200000 7414300000 17493 294 16076 88928;88929;88930;88931;88932;88933;88934 107602;107603;107604;107605;107606;107607;107608 107602 7 SLPGCQEIAEEFR Unmodified 1534.7086 0.70859237 2158 Q8IXK0;Q8IXK0-2;Q8IXK0-4;Q8IXK0-5 PHC2 Polyhomeotic-like protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 59.028 59.046 2 2.4172E-12 18580 20211116_3442_TMUAki_TMT10x_S_F4 135.02 119.75 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17494 2158 16077 88935;88936 107609;107610 107610 2 SLPGPKR Unmodified 753.44972 0.44972255 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 29.393 29.433 3 0.062603 7719 20211116_3439_TMUAki_TMT10x_S_F1 52.018 0.44559 334540 591280 7761.9 505860 493850 504250 423530 382720 445130 401150 469750 311540 551400 35955 522070 472140 511070 433950 395800 452770 391030 452380 2 2 1 2 2 2 2 2 2 2 2 162770 259860 0 230810 248150 309410 190790 183280 206900 187470 221990 151540 242370 13444 238690 236410 307520 197030 192840 210310 182920 213680 1 1 0 1 1 1 1 1 1 1 1 171770 331410 7761.9 275050 245700 194840 232740 199430 238230 213680 247750 159990 309030 22510 283380 235730 203540 236930 202960 242450 208100 238700 1 1 1 1 1 1 1 1 1 1 1 7265300 3438500 3826800 17495 196 16078 88937;88938 107611 107611 1 SLPGVVTR Unmodified 827.4865 0.48650199 1155 P51553;P51553-2 IDH3G Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial yes no 0 0 0 0 By MS/MS 8 0 1 1 36.688 36.974 2 0.061249 8814 20211116_3436_TMUAki_TMT10x_P_F8 62.464 38.941 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17496 1155 16079 88939 107612 107612 1 SLPIVFDEFVDMDFGTGAVK Oxidation (M) 2202.0555 0.055472553 820 P26640 VARS Valine--tRNA ligase yes yes 0 0 1 0 By MS/MS By MS/MS 4.25 1.79 1 1 2 1 3 81.261 81.247 3 6.1049E-05 26993 20211116_3440_TMUAki_TMT10x_S_F2 72.421 61.763 2702200 4446000 19063 3697400 3215300 4142300 3384200 3694700 3953000 3933400 3882500 2516000 4145800 222530 3831500 3086600 4182400 3441500 3786200 3994100 3831700 3747500 2 2 1 2 2 2 2 2 2 2 2 929770 1638600 19063 1284300 986220 1989400 1125100 1312900 1355100 1385900 1270600 865850 1527700 95641 1345800 950280 1968000 1141100 1371200 1365500 1350500 1228300 1 1 1 1 1 1 1 1 1 1 1 1772400 2807400 0 2413100 2229100 2152900 2259000 2381800 2597900 2547500 2611900 1650100 2618100 126890 2485700 2136400 2214400 2300400 2415000 2628600 2481200 2519200 1 1 0 1 1 1 1 1 1 1 1 1675400000 230470000 1444900000 17497 820 16080 88940;88941;88942;88943 107613;107614 107614 988 2 SLPIYSPEKVEEYR Unmodified 1708.8672 0.8672015 245 O43795;O43795-2 MYO1B Unconventional myosin-Ib yes no 0 0 0 1 By MS/MS By MS/MS 5.6 1.02 1 1 2 1 3 2 53.807 54.044 3 8.5389E-19 15454 20211116_3445_TMUAki_TMT10x_S_F6 160.79 133.76 11013000 20261000 32633 18164000 18412000 24964000 15035000 19163000 17500000 17141000 16551000 10254000 18898000 1013000 18780000 17569000 24881000 15504000 19716000 17662000 16824000 15995000 3 3 1 3 3 3 3 3 3 3 3 7474700 14019000 32633 12446000 14647000 21540000 12318000 13174000 11856000 11768000 11057000 6959800 13076000 740770 12944000 13987000 21194000 12602000 13775000 12054000 11551000 10691000 2 2 1 2 2 2 2 2 2 2 2 3538600 6242100 0 5717400 3765300 3423900 2717500 5988400 5643600 5373100 5493500 3294500 5822600 272210 5835400 3582400 3687200 2901900 5940800 5608000 5273000 5304000 1 1 0 1 1 1 1 1 1 1 1 1494800000 772840000 721940000 17498 245 16081 88944;88945;88946;88947;88948 107615;107616;107617;107618;107619 107619 5 SLPLNPKPFLNGLTGKPVMVK Acetyl (Protein N-term) 2291.3075 0.30754534 1350 P62306 SNRPF Small nuclear ribonucleoprotein F yes yes 1 0 0 2 By MS/MS By MS/MS 6.25 0.433 3 1 1 3 78.143 78.144 3;4 6.802E-10 24986 20211116_3434_TMUAki_TMT10x_P_F6 102.07 93.916 33028000 58107000 353450 57225000 44065000 29080000 41061000 14713000 10016000 16572000 33979000 30755000 54217000 3222200 58020000 42197000 31038000 40846000 15740000 12399000 16108000 32036000 4 4 4 4 4 4 4 4 4 4 4 11166000 17999000 164300 17815000 10864000 15178000 14236000 5962600 5234800 7164300 11362000 10398000 16794000 1074600 18148000 10512000 15418000 13985000 6563400 5936800 6947600 10771000 2 2 2 2 2 2 2 2 2 2 2 21863000 40108000 189160 39410000 33201000 13901000 26826000 8750200 4781700 9407600 22617000 20358000 37423000 2147600 39872000 31686000 15620000 26861000 9176200 6462100 9160900 21266000 2 2 2 2 2 2 2 2 2 2 2 6283700000 1217500000 5066100000 17499 1350 16082 88949;88950;88951;88952 107620;107621;107622;107623 107620 4 SLPLNPKPFLNGLTGKPVMVK Acetyl (Protein N-term);Oxidation (M) 2307.3025 0.30245996 1350 P62306 SNRPF Small nuclear ribonucleoprotein F yes yes 1 0 1 2 By matching By MS/MS 5 0.816 1 1 1 1 2 77.415 77.414 4 7.4977E-05 25047 20211116_3445_TMUAki_TMT10x_S_F6 51.029 47.493 13216000 23186000 289700 18981000 20514000 13479000 15872000 15729000 13124000 14399000 16584000 12307000 21619000 1467900 19579000 19571000 14121000 16258000 15839000 13594000 14117000 15891000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13216000 23186000 289700 18981000 20514000 13479000 15872000 15729000 13124000 14399000 16584000 12307000 21619000 1467900 19579000 19571000 14121000 16258000 15839000 13594000 14117000 15891000 1 1 1 1 1 1 1 1 1 1 1 4494800000 592690000 3902100000 17500 1350 16082 88953;88954;88955 107624 107624 1809 1 SLPNILTDDRFK Unmodified 1417.7565 0.75652884 2648 Q9BSC4;Q9BSC4-2;Q9BSC4-4 NOL10 Nucleolar protein 10 yes no 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 60.13 60.745 3 1.0807E-09 20201 20211116_3446_TMUAki_TMT10x_S_F7 157.86 122.86 15486000 25794000 222160 26264000 19336000 24906000 17822000 18419000 18401000 19040000 19918000 14421000 24070000 1544900 26740000 18516000 25311000 18175000 19073000 18749000 18570000 19167000 4 4 4 4 4 4 4 4 4 4 4 8625300 14142000 164240 13978000 11880000 18311000 11373000 9525300 9800400 10360000 10470000 8032200 13196000 913750 14337000 11389000 18189000 11514000 10153000 10063000 10084000 10079000 2 2 2 2 2 2 2 2 2 2 2 6860900 11651000 57915 12285000 7456200 6595200 6449500 8893900 8600900 8680100 9448800 6388600 10874000 631130 12403000 7127500 7121400 6661200 8920300 8685900 8486300 9088600 2 2 2 2 2 2 2 2 2 2 2 1258900000 720990000 537890000 17501 2648 16083 88956;88957 107625;107626;107627;107628 107627 4 SLPPADISDIIHSTEK Unmodified 1721.8836 0.88357984 348 O75592;O75592-2 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 yes no 0 0 0 0 By MS/MS 4 0.816 1 1 1 3 77.639 77.618 3 0.083551 25972 20211116_3433_TMUAki_TMT10x_P_F5 28.283 1.7417 97800000 149220000 766960 136590000 105810000 141760000 122830000 34007000 27249000 53699000 85259000 91067000 139190000 8858100 140310000 101920000 141670000 120740000 40603000 33963000 51634000 80450000 3 3 2 3 3 3 3 3 3 3 3 97800000 149220000 766960 136590000 105810000 141760000 122830000 34007000 27249000 53699000 85259000 91067000 139190000 8858100 140310000 101920000 141670000 120740000 40603000 33963000 51634000 80450000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6917600000 6917600000 0 17502 348 16084 88958;88959;88960 107629 107629 1 SLPPVMAQNLSIPLAFACLLHLANEK Oxidation (M) 2862.5136 0.51359172 1746 Q15003;Q15003-2 NCAPH Condensin complex subunit 2 yes no 0 0 1 0 By MS/MS 5.5 0.5 1 1 2 81.518 81.526 4 1.5917E-08 26738 20211116_3445_TMUAki_TMT10x_S_F6 91.583 80.894 713180 1080300 0 902470 939440 796990 973290 678430 630190 746000 827750 663900 1007400 44468 931650 900470 815760 974860 697790 663140 725800 792390 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 713180 1080300 0 902470 939440 796990 973290 678430 630190 746000 827750 663900 1007400 44468 931650 900470 815760 974860 697790 663140 725800 792390 1 1 0 1 1 1 1 1 1 1 1 273250000 0 273250000 17503 1746 16085 88961;88962 107630 107630 2353 1 SLPSVETLGCTSVICSDK Unmodified 1951.9231 0.92307817 697 P16615;P16615-5;P16615-2;P16615-3;P16615-4;O14983;O14983-3;O14983-2;Q93084;Q93084-2;Q93084-4;Q93084-3;Q93084-7;Q93084-6;Q93084-5 ATP2A2;ATP2A1;ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1;Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 65.582 65.578 3 9.0954E-05 19895 20211116_3434_TMUAki_TMT10x_P_F6 75.91 58.209 2988000 4933200 114910 4953900 3423100 5588100 3878100 2229300 2006300 2769600 3673300 2783000 4603300 360910 5061800 3300600 5578200 3852000 2452300 2182200 2682600 3491900 1 1 1 1 1 1 1 1 1 1 1 2988000 4933200 114910 4953900 3423100 5588100 3878100 2229300 2006300 2769600 3673300 2783000 4603300 360910 5061800 3300600 5578200 3852000 2452300 2182200 2682600 3491900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1596800000 1596800000 0 17504 697 16086 88963;88964 107631;107632 107632 2 SLPVEEQPK Unmodified 1025.5393 0.53932542 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 By MS/MS 4 0 1 1 38.118 38.276 3 0.0049969 10115 20211116_3442_TMUAki_TMT10x_S_F4 64.04 36.925 184900 302390 3959.1 365090 190650 152810 187570 205570 254330 213900 281410 172190 282400 19100 364850 182960 169950 192490 206590 256770 208560 270630 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 184900 302390 3959.1 365090 190650 152810 187570 205570 254330 213900 281410 172190 282400 19100 364850 182960 169950 192490 206590 256770 208560 270630 1 1 1 1 1 1 1 1 1 1 1 7793300 0 7793300 17505 1997 16087 88965 107633 107633 1 SLPVPQLVPETEDEK Unmodified 1679.8618 0.86178177 64 O00154-4;O00154;O00154-6;O00154-7;O00154-5 ACOT7 Cytosolic acyl coenzyme A thioester hydrolase yes no 0 0 0 0 By MS/MS By MS/MS 3.9 0.943 1 2 4 3 4 6 65.977 65.836 2;3 9.2555E-10 21393 20211116_3442_TMUAki_TMT10x_S_F4 119.39 94 59150000 100610000 170790 97766000 70094000 82165000 65193000 64768000 60359000 65494000 75673000 55073000 93871000 4904900 99705000 67076000 84276000 66234000 66751000 62160000 63935000 72525000 11 11 4 11 11 11 11 11 11 11 11 27534000 45254000 97416 43832000 33071000 51759000 33229000 28909000 28386000 30272000 33314000 25637000 42222000 2308700 44935000 31711000 51726000 33547000 30587000 29265000 29509000 31984000 5 5 2 5 5 5 5 5 5 5 5 31615000 55358000 73374 53934000 37022000 30406000 31964000 35859000 31973000 35222000 42360000 29436000 51649000 2596300 54770000 35365000 32550000 32687000 36164000 32895000 34426000 40541000 6 6 2 6 6 6 6 6 6 6 6 4673900000 2582700000 2091200000 17506 64 16088 88966;88967;88968;88969;88970;88971;88972;88973;88974;88975 107634;107635;107636;107637;107638;107639;107640;107641;107642;107643;107644;107645;107646 107645 13 SLPVPQLVPETEDEKK Unmodified 1807.9567 0.95674479 64 O00154-4;O00154;O00154-6;O00154-7;O00154-5 ACOT7 Cytosolic acyl coenzyme A thioester hydrolase yes no 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 58.421 58.571 3 2.323E-06 18140 20211116_3433_TMUAki_TMT10x_P_F5 91.355 73.34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17507 64 16089 88976;88977 107647;107648 107647 2 SLPYNQPGTCYTLVALPK Unmodified 2021.0292 0.029198224 3339 Q9Y678 COPG1 Coatomer subunit gamma-1 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 71.517 71.385 3 5.3184E-12 24317 20211116_3429_TMUAki_TMT10x_P_F2 124.29 103.28 14211000 22428000 223810 21420000 13974000 24159000 17737000 14825000 13247000 16209000 17088000 13233000 20924000 1291800 21964000 13501000 24233000 17656000 15586000 13809000 15774000 16366000 5 5 3 5 5 5 5 5 5 5 5 11134000 16926000 223810 16870000 10150000 20592000 13625000 11528000 10395000 12463000 12999000 10368000 15793000 1070000 17269000 9830400 20545000 13538000 12206000 10809000 12133000 12459000 4 4 3 4 4 4 4 4 4 4 4 3077000 5502200 0 4550100 3823200 3566600 4112400 3297200 2851900 3746800 4089200 2864600 5130500 221720 4694400 3670300 3688000 4117300 3379400 3000400 3640800 3906400 1 1 0 1 1 1 1 1 1 1 1 1367000000 819520000 547440000 17508 3339 16090 88978;88979;88980;88981 107649;107650;107651;107652;107653;107654 107649 6 SLQADTTNTDTALTTLEEALAEK Unmodified 2435.1915 0.19150834 2133 Q8IUD2;Q8IUD2-4;Q8IUD2-2;Q8IUD2-3;Q8IUD2-5 ERC1 ELKS/Rab6-interacting/CAST family member 1 yes no 0 0 0 0 By MS/MS 2 0 1 1 80.261 80.244 3 1.2634E-05 27837 20211116_3429_TMUAki_TMT10x_P_F2 78.352 12.519 4764700 7927600 0 6624000 4394100 8236400 5583000 4247500 4209300 5147700 5516000 4435300 7392400 256970 6873700 4234500 8201600 5558400 4546800 4388700 4990400 5280600 2 2 0 2 2 2 2 2 2 2 2 4764700 7927600 0 6624000 4394100 8236400 5583000 4247500 4209300 5147700 5516000 4435300 7392400 256970 6873700 4234500 8201600 5558400 4546800 4388700 4990400 5280600 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1129900000 1129900000 0 17509 2133 16091 88982 107655;107656 107655 2 SLQALGEVIEAELR Unmodified 1526.8304 0.83042206 3231 Q9Y285;Q9Y285-2 FARSA Phenylalanine--tRNA ligase alpha subunit yes no 0 0 0 0 By MS/MS By MS/MS 2.93 1.34 3 3 3 4 2 5 10 80.35 80.33 2;3 5.7897E-43 27884 20211116_3429_TMUAki_TMT10x_P_F2 260.5 196.08 37363000 60324000 11451 55737000 42079000 54667000 45377000 36501000 36147000 41030000 48251000 34782000 56272000 2018800 57169000 40379000 55349000 45570000 38165000 37607000 39885000 46171000 12 12 1 12 12 12 12 12 12 12 12 19627000 30275000 0 28315000 18204000 33779000 21930000 19057000 19141000 21700000 25267000 18270000 28243000 1091400 29106000 17515000 33744000 21963000 20198000 19812000 21084000 24184000 5 5 0 5 5 5 5 5 5 5 5 17736000 30049000 11451 27422000 23875000 20888000 23447000 17445000 17006000 19330000 22984000 16512000 28029000 927350 28063000 22865000 21605000 23607000 17967000 17795000 18801000 21987000 7 7 1 7 7 7 7 7 7 7 7 9129800000 3643100000 5486700000 17510 3231 16092 88983;88984;88985;88986;88987;88988;88989;88990;88991;88992;88993;88994;88995;88996;88997 107657;107658;107659;107660;107661;107662;107663;107664;107665;107666;107667;107668;107669 107658 13 SLQEEPVEGFR Unmodified 1289.6252 0.62518031 2041 Q712K3 UBE2R2 Ubiquitin-conjugating enzyme E2 R2 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 44.74 44.735 2 5.9415E-15 13505 20211116_3429_TMUAki_TMT10x_P_F2 172.61 136.7 531370 824880 0 1108300 367160 327040 389090 897310 907550 652970 838270 494730 770760 39268 1099000 352440 394170 409570 876230 898130 647790 810790 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 531370 824880 0 1108300 367160 327040 389090 897310 907550 652970 838270 494730 770760 39268 1099000 352440 394170 409570 876230 898130 647790 810790 1 1 0 1 1 1 1 1 1 1 1 60600000 0 60600000 17511 2041 16093 88998;88999 107670;107671 107670 2 SLQEEQSRPPTAVSSPGGPAR Unmodified 2150.0716 0.071608399 2711 Q9BWU0 SLC4A1AP Kanadaptin yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 32.642 32.626 3 6.4418E-68 7467 20211116_3431_TMUAki_TMT10x_P_F4 249.56 222.03 259470 451000 2454.9 629510 1498200 975350 520520 488690 692670 386420 538250 241580 421500 37994 634770 1411900 961360 584430 518360 691660 381610 524010 2 2 1 2 2 2 2 2 2 2 2 259470 451000 2454.9 629510 1498200 975350 520520 488690 692670 386420 538250 241580 421500 37994 634770 1411900 961360 584430 518360 691660 381610 524010 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 119200000 119200000 0 17512 2711 16094 89000;89001 107672;107673 107673 2 SLQENEEEEIGNLELAWDMLDLAK Oxidation (M) 2804.3062 0.30622052 1091 P49321;P49321-3;P49321-4;P49321-2 NASP Nuclear autoantigenic sperm protein yes no 0 0 1 0 By MS/MS By MS/MS 1 0 3 2 1 81.723 81.723 3;4 1.0787E-22 27013 20211116_3428_TMUAki_TMT10x_P_F1 152.27 141.43 4346800 7334000 63627 6103400 4935200 8208300 5591600 3372700 3292000 4273000 5651200 4047700 6838800 410920 6344900 4751300 8123500 5566300 3700100 3533400 4136200 5378400 3 3 2 3 3 3 3 3 3 3 3 4346800 7334000 63627 6103400 4935200 8208300 5591600 3372700 3292000 4273000 5651200 4047700 6838800 410920 6344900 4751300 8123500 5566300 3700100 3533400 4136200 5378400 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1903400000 1903400000 0 17513 1091 16095 89002;89003;89004 107674;107675;107676;107677 107676 1420 4 SLQEQADAAEER Unmodified 1345.611 0.61098681 579 P09493-5 TPM1 Tropomyosin alpha-1 chain yes yes 0 0 0 0 By matching By MS/MS 1 0 2 1 1 32.72 32.735 2 1.0426E-30 9024 20211116_3439_TMUAki_TMT10x_S_F1 270.67 239.38 140320 229090 2145.7 279440 172700 119530 157390 163420 176790 117800 235160 130670 213960 14087 279130 165340 132620 161050 162570 181070 116930 225050 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 140320 229090 2145.7 279440 172700 119530 157390 163420 176790 117800 235160 130670 213960 14087 279130 165340 132620 161050 162570 181070 116930 225050 1 1 1 1 1 1 1 1 1 1 1 28067000 17518000 10549000 17514 579 16096 89005;89006 107678 107678 1 SLQESRPFSVDFFRK Unmodified 1841.9424 0.94243213 3019 Q9NYH9 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes yes 0 0 0 2 By matching By MS/MS 3 0 2 1 1 57.437 57.119 4 0.00073173 20081 20211116_3441_TMUAki_TMT10x_S_F3 77.746 60.867 3314000 5465100 101800 5765800 3863800 3357000 3471100 4257400 4184900 3728700 4580900 3086400 5100600 377330 5824800 3701100 3588700 3563500 4267400 4240200 3663400 4406800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3314000 5465100 101800 5765800 3863800 3357000 3471100 4257400 4184900 3728700 4580900 3086400 5100600 377330 5824800 3701100 3588700 3563500 4267400 4240200 3663400 4406800 1 1 1 1 1 1 1 1 1 1 1 856760000 418350000 438400000 17515 3019 16097 89007;89008 107679 107679 1 SLQQLAEER Unmodified 1072.5513 0.55128709 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 42.14 41.824 2 6.4668E-14 12327 20211116_3430_TMUAki_TMT10x_P_F3 210.93 160.9 710440 1185400 0 1691100 635650 523170 567760 1257900 1438700 1045500 1352900 661470 1108000 55348 1672000 607620 621520 606420 1235500 1422500 1029900 1307700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 710440 1185400 0 1691100 635650 523170 567760 1257900 1438700 1045500 1352900 661470 1108000 55348 1672000 607620 621520 606420 1235500 1422500 1029900 1307700 1 1 0 1 1 1 1 1 1 1 1 43390000 0 43390000 17516 1663 16098 89009;89010;89011;89012 107680;107681;107682;107683 107681 4 SLQSLEASLHAMESTR Oxidation (M) 1774.852 0.85196214 3219 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 1 0 By MS/MS 4.5 0.5 1 1 2 52.092 52.171 3 2.6098E-06 14508 20211116_3444_TMUAki_TMT10x_S_F5 88.264 75.704 4853300 9122300 84903 8694100 5267700 4613500 4834000 8506400 7236300 7412000 7370100 4519500 8510500 487300 8838600 5045100 5039100 5000400 8419500 7261300 7284100 7105500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4853300 9122300 84903 8694100 5267700 4613500 4834000 8506400 7236300 7412000 7370100 4519500 8510500 487300 8838600 5045100 5039100 5000400 8419500 7261300 7284100 7105500 2 2 2 2 2 2 2 2 2 2 2 253460000 0 253460000 17517 3219 16099 89013;89014 107684;107685;107686 107686 3208 3 SLQSVAEER Unmodified 1017.5091 0.50908792 1308 P61313;P61313-2 RPL15 60S ribosomal protein L15 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 1.49 2 1 1 1 1 3 3 33.838 33.796 2 2.4442E-15 9024 20211116_3429_TMUAki_TMT10x_P_F2 238.63 161.78 4194600 6334800 21469 7182800 9100600 6397300 4896400 4605900 4660700 3654500 5730600 3905700 5914200 426470 7256000 8621000 6525400 5179200 4744900 4789800 3608400 5495000 6 6 4 6 6 6 6 6 6 6 6 2554500 3711700 14322 4263900 7436100 5038700 3060700 2804400 2883400 2197700 3402400 2378600 3465500 284700 4322400 7020400 5035100 3327800 2945900 2959500 2171400 3266100 3 3 2 3 3 3 3 3 3 3 3 1640100 2623000 7147.1 2918900 1664500 1358700 1835800 1801600 1777400 1456700 2328200 1527100 2448700 141770 2933600 1600600 1490300 1851400 1799000 1830300 1436900 2228800 3 3 2 3 3 3 3 3 3 3 3 584180000 333080000 251100000 17518 1308 16100 89015;89016;89017;89018;89019;89020 107687;107688;107689;107690;107691;107692 107688 6 SLREHMGNVVEALIALTN Unmodified 1966.0306 0.030595207 3001 Q9NX55 HYPK Huntingtin-interacting protein K yes yes 0 0 0 1 By MS/MS 3 0 1 1 85.504 85.484 3 0.080216 31416 20211116_3441_TMUAki_TMT10x_S_F3 36.856 18.26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17519 3001 16101 89021 107693 107693 1 SLRPDPNFDALISK Unmodified 1571.8308 0.83075641 2577;1530 Q06587;Q06587-2;Q99496 RING1;RNF2 E3 ubiquitin-protein ligase RING1;E3 ubiquitin-protein ligase RING2 no no 0 0 0 1 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 72.508 72.882 3 1.0187E-06 18358 20211116_3436_TMUAki_TMT10x_P_F8 98.507 68.819 7063300 11669000 152450 11497000 10069000 17301000 10278000 11864000 10784000 10148000 10603000 6577800 10888000 769770 11828000 9668800 17145000 10430000 12286000 10942000 9982100 10234000 2 2 2 2 2 2 2 2 2 2 2 6511400 10743000 141590 10594000 9458000 16664000 9670000 11086000 10046000 9416200 9812000 6063900 10024000 713070 10909000 9082700 16477000 9809300 11503000 10195000 9265200 9472500 1 1 1 1 1 1 1 1 1 1 1 551900 926380 10861 902770 610640 636500 607710 778060 738090 732100 790760 513960 864320 56701 918660 586090 668030 620620 782560 747040 716900 761180 1 1 1 1 1 1 1 1 1 1 1 1012800000 997650000 15188000 17520 1530;2577 16102 89022;89023;89024 107694;107695;107696 107695 3 SLRVDIAEGR Unmodified 1114.6095 0.60947067 1765 Q15056-2;Q15056 EIF4H Eukaryotic translation initiation factor 4H yes no 0 0 0 1 By MS/MS By MS/MS 3.45 1.24 2 3 3 8 4 8 12 33.952 33.96 2;3 9.2643E-10 8796 20211116_3431_TMUAki_TMT10x_P_F4 174.42 130.29 13631000 20838000 182750 20496000 18727000 22260000 16072000 18707000 17570000 17325000 19143000 12692000 19443000 1343600 20960000 17898000 22489000 16488000 19158000 17865000 16977000 18418000 14 14 10 14 14 14 14 14 14 14 14 8284900 12340000 94280 12275000 12271000 16032000 9805000 10709000 9847100 9676900 10888000 7714800 11515000 830560 12583000 11709000 15981000 10076000 11126000 10053000 9493500 10471000 4 4 4 4 4 4 4 4 4 4 4 5345600 8498100 88469 8221200 6456000 6228200 6267200 7998400 7723100 7647800 8255400 4977700 7928600 513030 8376700 6189100 6507600 6412100 8032400 7812100 7483700 7947200 10 10 6 10 10 10 10 10 10 10 10 3421100000 2476700000 944460000 17521 1765 16103 89025;89026;89027;89028;89029;89030;89031;89032;89033;89034;89035;89036;89037;89038;89039;89040;89041;89042;89043;89044 107697;107698;107699;107700;107701;107702;107703;107704;107705;107706;107707;107708;107709;107710;107711;107712;107713;107714;107715;107716 107701 20 SLSALGNVISALAEGSTYVPYR Unmodified 2267.1798 0.17976186 906 P33176 KIF5B Kinesin-1 heavy chain yes yes 0 0 0 0 By MS/MS By MS/MS 3.6 1.02 1 1 2 1 1 4 81.903 81.896 3 1.009E-55 27844 20211116_3442_TMUAki_TMT10x_S_F4 226.45 207.37 5956300 9175000 9247 9539900 6887700 7144700 7096700 4836500 4878700 5089600 7030800 5545400 8562600 448550 9670700 6605700 7374400 7118900 5041500 5136700 4960300 6715700 7 7 2 7 7 7 7 7 7 7 7 1583700 2657100 9247 2381400 1419600 2900800 1739100 1609200 1633200 1739900 2061700 1474700 2478300 137620 2456700 1369700 2894000 1744100 1705200 1681300 1693900 1975600 2 2 2 2 2 2 2 2 2 2 2 4372500 6517900 0 7158500 5468200 4243900 5357600 3227300 3245600 3349700 4969100 4070700 6084300 310930 7214000 5236000 4480400 5374800 3336300 3455400 3266400 4740200 5 5 0 5 5 5 5 5 5 5 5 1907900000 848650000 1059200000 17522 906 16104 89045;89046;89047;89048;89049 107717;107718;107719;107720;107721;107722 107720 6 SLSALGNVISALAEGSTYVPYRDSK Unmodified 2597.3337 0.33369632 906 P33176 KIF5B Kinesin-1 heavy chain yes yes 0 0 0 1 By MS/MS By MS/MS 4 0 3 2 1 80.005 79.998 3 2.7137E-14 26710 20211116_3431_TMUAki_TMT10x_P_F4 125.39 112.71 1520500 2533500 13270 2737400 2230300 1824400 2513500 1282600 1140300 1564200 1771200 1415900 2364800 148370 2764600 2146400 1902700 2492200 1339800 1242500 1516100 1689000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1520500 2533500 13270 2737400 2230300 1824400 2513500 1282600 1140300 1564200 1771200 1415900 2364800 148370 2764600 2146400 1902700 2492200 1339800 1242500 1516100 1689000 1 1 1 1 1 1 1 1 1 1 1 1937200000 747620000 1189600000 17523 906 16105 89050;89051;89052 107723;107724 107723 2 SLSALGNVISALAEGTK Unmodified 1629.8938 0.8937506 262 O60282;Q12840;O60282-2 KIF5C;KIF5A Kinesin heavy chain isoform 5C;Kinesin heavy chain isoform 5A yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 3 3 3 3 80.824 80.797 2;3 4.901E-11 29541 20211116_3441_TMUAki_TMT10x_S_F3 128.99 101.34 25289000 41401000 22327 39684000 28039000 32079000 30024000 20382000 20375000 22437000 27602000 23543000 38625000 1613200 40492000 26902000 32886000 30052000 21375000 21407000 21829000 26403000 5 5 1 5 5 5 5 5 5 5 5 11922000 19363000 0 19019000 10536000 18175000 12615000 9540800 9558400 11233000 12953000 11098000 18066000 614940 19414000 10131000 18374000 12593000 10187000 9978300 10901000 12391000 2 2 0 2 2 2 2 2 2 2 2 13367000 22038000 22327 20666000 17504000 13904000 17409000 10841000 10816000 11204000 14648000 12445000 20559000 998290 21078000 16770000 14512000 17460000 11188000 11428000 10927000 14012000 3 3 1 3 3 3 3 3 3 3 3 5067000000 1942700000 3124400000 17524 262 16106 89053;89054;89055;89056;89057;89058 107725;107726;107727;107728;107729 107728 5 SLSEINKPNFYNNDFDDDFSHR Unmodified 2673.1732 0.17317294 1924 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 0 0 0 1 By matching By MS/MS 5.5 0.5 1 1 1 1 60.147 60.237 4 0.0066119 18042 20211116_3445_TMUAki_TMT10x_S_F6 52.683 49.089 12312000 23675000 252250 22441000 16734000 14371000 12905000 19989000 18726000 19274000 19139000 11465000 22087000 1216900 22860000 15958000 15264000 13471000 20018000 18810000 18854000 18449000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12312000 23675000 252250 22441000 16734000 14371000 12905000 19989000 18726000 19274000 19139000 11465000 22087000 1216900 22860000 15958000 15264000 13471000 20018000 18810000 18854000 18449000 3 3 2 3 3 3 3 3 3 3 3 2068800000 541690000 1527200000 17525 1924 16107 89059;89060 107730;107731;107732 107731 3 SLSGLILK Unmodified 829.5273 0.52730417 2381;134 Q92973;Q92973-2;O14787-2;O14787 TNPO1;TNPO2 Transportin-1;Transportin-2 no no 0 0 0 0 By MS/MS By MS/MS 3.57 2.87 2 2 1 2 4 3 62.435 62.235 2 0.00067033 18987 20211116_3428_TMUAki_TMT10x_P_F1 136.16 45.09 37680000 60903000 375110 64938000 56347000 66478000 45351000 50536000 50986000 46932000 52286000 35086000 56845000 3697600 65986000 53772000 67270000 46751000 52078000 51670000 45984000 50398000 5 5 4 5 5 5 5 5 5 5 5 23502000 36989000 228250 39820000 41770000 52464000 31341000 30727000 30169000 28663000 31230000 21885000 34525000 2417100 40612000 39802000 52179000 32300000 32276000 30781000 28079000 30094000 3 3 3 3 3 3 3 3 3 3 3 14177000 23915000 146860 25118000 14577000 14013000 14009000 19809000 20817000 18268000 21056000 13201000 22319000 1280500 25374000 13969000 15091000 14451000 19802000 20889000 17905000 20304000 2 2 1 2 2 2 2 2 2 2 2 2326100000 1631800000 694300000 17526 2381;134 16108 89061;89062;89063;89064;89065;89066;89067 107733;107734;107735;107736;107737;107738;107739;107740 107733 8 SLSGLLPAQTSLEYALLDAVTQQEK Unmodified 2674.4065 0.40652692 2221 Q8NBF2 NHLRC2 NHL repeat-containing protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 6.3 1.1 1 1 3 4 1 4 6 82.122 82.13 3;4 1.6946E-23 28720 20211116_3435_TMUAki_TMT10x_P_F7 158.05 134.25 7533200 11892000 33202 11376000 8709700 8662900 10150000 5602100 5735800 7027500 9016900 7014200 11094000 639540 11601000 8387300 8923800 10084000 5893000 6144800 6804700 8596700 8 8 3 8 8 8 8 8 8 8 8 1220000 1854300 0 1809000 1134300 2048600 1397800 937560 963670 1233800 1357100 1135900 1730100 95503 1852300 1094000 2047200 1390600 1018200 1013300 1192800 1296900 2 2 0 2 2 2 2 2 2 2 2 6313200 10037000 33202 9566900 7575400 6614400 8752300 4664600 4772100 5793700 7659800 5878200 9364200 544040 9748900 7293400 6876600 8693100 4874800 5131400 5611900 7299700 6 6 3 6 6 6 6 6 6 6 6 1355700000 324130000 1031500000 17527 2221 16109 89068;89069;89070;89071;89072;89073;89074;89075;89076;89077 107741;107742;107743;107744;107745;107746;107747;107748 107742 8 SLSQSFENLLDEPAYGLIQK Unmodified 2251.1372 0.13722835 2269 Q8TC07-2;Q8TC07-3 TBC1D15 TBC1 domain family member 15 yes no 0 0 0 0 By MS/MS 6 0 1 1 80.104 80.104 3 2.9706E-18 26153 20211116_3445_TMUAki_TMT10x_S_F6 147.06 129.36 1778500 3554000 23937 3048000 2358000 2248500 2319800 1535700 1424300 1671300 2247200 1656200 3314300 177880 3133300 2261500 2324000 2327400 1601400 1517400 1626700 2142300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1778500 3554000 23937 3048000 2358000 2248500 2319800 1535700 1424300 1671300 2247200 1656200 3314300 177880 3133300 2261500 2324000 2327400 1601400 1517400 1626700 2142300 1 1 1 1 1 1 1 1 1 1 1 485790000 0 485790000 17528 2269 16110 89078 107749 107749 1 SLSTTNVFACSDRPTVIYSSNHK Unmodified 2583.2388 0.23875008 1847 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 1 By MS/MS 4 0 1 1 48.952 49.108 4 2.6322E-06 14074 20211116_3431_TMUAki_TMT10x_P_F4 82.267 66.675 1037500 1717500 47297 2028000 1980300 2827200 1297400 1342000 1466700 1261400 1499200 966350 1603800 143300 2059000 1884500 2797500 1357000 1437000 1485800 1235300 1445300 1 1 1 1 1 1 1 1 1 1 1 1037500 1717500 47297 2028000 1980300 2827200 1297400 1342000 1466700 1261400 1499200 966350 1603800 143300 2059000 1884500 2797500 1357000 1437000 1485800 1235300 1445300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 295890000 295890000 0 17529 1847 16111 89079 107750 107750 1 SLSVLSSSTIIANPDIPEAYK Unmodified 2204.1576 0.15762944 828 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 7.4 0.49 3 2 3 2 77.257 77.28 3 1.3172E-19 27143 20211116_3446_TMUAki_TMT10x_S_F7 153.36 138.6 15821000 25866000 87017 23099000 19654000 24540000 20361000 16697000 15860000 18100000 19796000 14729000 24125000 1118100 23781000 18847000 24735000 20477000 17414000 16471000 17619000 18974000 4 4 1 4 4 4 4 4 4 4 4 8249100 13530000 0 10958000 7371400 14970000 9360500 9296900 8012200 8561800 9464300 7678900 12616000 447300 11421000 7103500 14876000 9349000 9716700 8261600 8392200 9084900 2 2 0 2 2 2 2 2 2 2 2 7571500 12336000 87017 12140000 12283000 9570100 11001000 7400100 7847600 9537800 10331000 7049700 11510000 670800 12361000 11744000 9859100 11128000 7697500 8209700 9227100 9889400 2 2 1 2 2 2 2 2 2 2 2 6302700000 2850500000 3452200000 17530 828 16112 89080;89081;89082;89083;89084 107751;107752;107753;107754;107755 107754 5 SLTAEIDR Unmodified 903.46616 0.46616048 1218 P54136 RARS Arginine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 37.121 37.042 2 0.0032944 8776 20211116_3440_TMUAki_TMT10x_S_F2 101.43 42.513 1494400 2528000 15204 2760800 1470300 1403200 1519200 1862600 1917400 1689100 2146100 1391500 2359700 129970 2779800 1411500 1523600 1550700 1865400 1941300 1656800 2063200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1494400 2528000 15204 2760800 1470300 1403200 1519200 1862600 1917400 1689100 2146100 1391500 2359700 129970 2779800 1411500 1523600 1550700 1865400 1941300 1656800 2063200 2 2 1 2 2 2 2 2 2 2 2 85235000 0 85235000 17531 1218 16113 89085;89086 107756;107757 107756 2 SLTAEIDRLK Unmodified 1144.6452 0.64518747 1218 P54136 RARS Arginine--tRNA ligase, cytoplasmic yes yes 0 0 0 1 By MS/MS 6 0 1 1 51.784 51.916 3 5.4782E-09 14590 20211116_3445_TMUAki_TMT10x_S_F6 131.43 98.204 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17532 1218 16114 89087 107758 107758 1 SLTANPELIDR Unmodified 1227.6459 0.64591575 3241 Q9Y2L1;Q9Y2L1-2 DIS3 Exosome complex exonuclease RRP44 yes no 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 2 3 45.974 45.964 2 1.6782E-08 13138 20211116_3442_TMUAki_TMT10x_S_F4 155.97 94.007 7447600 13192000 56993 15673000 12305000 12682000 7925500 13981000 14691000 12303000 13176000 6934700 12319000 713660 15769000 11691000 13133000 8477600 14099000 14596000 12085000 12758000 6 6 5 6 6 6 6 6 6 6 6 2915100 4670700 21223 5651600 8206200 8748400 4619700 5070100 5227800 4307700 4868500 2714400 4361900 335560 5742600 7779600 8638600 4892300 5317800 5279100 4238500 4707600 2 2 2 2 2 2 2 2 2 2 2 4532500 8521000 35770 10021000 4099000 3933400 3305800 8910400 9463000 7995200 8308000 4220300 7956600 378100 10026000 3911000 4494500 3585300 8780900 9316600 7846300 8050200 4 4 3 4 4 4 4 4 4 4 4 647420000 407320000 240100000 17533 3241 16115 89088;89089;89090;89091;89092 107759;107760;107761;107762;107763;107764 107763 6 SLTEYLQNVEQK Unmodified 1450.7304 0.73037367 906 P33176 KIF5B Kinesin-1 heavy chain yes yes 0 0 0 0 By MS/MS 5 0 1 1 66.755 66.792 3 0.021058 20417 20211116_3444_TMUAki_TMT10x_S_F5 56.938 31.596 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17534 906 16116 89093 107765 107765 1 SLTGLLSSFVEVESIKR Unmodified 1864.0306 0.030578432 1939 Q5T4S7;Q5T4S7-3;Q5T4S7-4;Q5T4S7-2 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 0 1 By MS/MS 3 0 1 1 79.407 79.356 3 0.066389 28990 20211116_3441_TMUAki_TMT10x_S_F3 37.112 18.516 2092500 3303800 0 3140100 2574200 2348900 2793700 1843800 1942500 1912600 2334800 1947800 3082200 114000 3203200 2469400 2430300 2795900 1902200 2027300 1865200 2240100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2092500 3303800 0 3140100 2574200 2348900 2793700 1843800 1942500 1912600 2334800 1947800 3082200 114000 3203200 2469400 2430300 2795900 1902200 2027300 1865200 2240100 1 1 0 1 1 1 1 1 1 1 1 529670000 0 529670000 17535 1939 16117 89094 107766 107766 1 SLTIAEFK Unmodified 907.50148 0.50148335 2570 Q99426 TBCB Tubulin-folding cofactor B yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 58.89 59.159 2 0.00045223 17616 20211116_3445_TMUAki_TMT10x_S_F6 153.04 63.486 22806000 38043000 22696 41864000 24396000 20336000 21044000 30835000 28259000 27816000 32923000 21234000 35512000 1786700 42117000 23300000 22281000 21745000 30731000 28599000 27291000 31615000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22806000 38043000 22696 41864000 24396000 20336000 21044000 30835000 28259000 27816000 32923000 21234000 35512000 1786700 42117000 23300000 22281000 21745000 30731000 28599000 27291000 31615000 3 3 2 3 3 3 3 3 3 3 3 739060000 0 739060000 17536 2570 16118 89095;89096;89097;89098 107767;107768;107769;107770;107771 107769 5 SLTNDWEDHLAVK Unmodified 1526.7365 0.73652168 553;544 P07900;P07900-2;P08238 HSP90AA1;HSP90AB1 Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta no no 0 0 0 0 By MS/MS By MS/MS 4.9 1.9 2 2 2 5 7 4 5 2 15 14 51.779 51.856 2;3 9.3501E-44 15776 20211116_3444_TMUAki_TMT10x_S_F5 283.19 238.99 563360000 942310000 11935000 1172800000 723940000 638410000 572470000 388580000 331390000 429720000 689520000 524620000 880130000 59181000 1172200000 691000000 677720000 581140000 408920000 360390000 417990000 654070000 42 42 33 42 42 42 42 42 42 42 42 200820000 307840000 2080800 368020000 380770000 398150000 291260000 153620000 130870000 154110000 231170000 186990000 287470000 20485000 371640000 362930000 398260000 295150000 168550000 143720000 150500000 219900000 23 23 17 23 23 23 23 23 23 23 23 362540000 634470000 9853800 804830000 343170000 240260000 281210000 234950000 200510000 275600000 458350000 337630000 592660000 38696000 800580000 328070000 279460000 285990000 240370000 216670000 267490000 434170000 19 19 16 19 19 19 19 19 19 19 19 105870000000 60797000000 45068000000 17537 544;553 16119 89099;89100;89101;89102;89103;89104;89105;89106;89107;89108;89109;89110;89111;89112;89113;89114;89115;89116;89117;89118;89119;89120;89121;89122;89123;89124;89125;89126;89127 107772;107773;107774;107775;107776;107777;107778;107779;107780;107781;107782;107783;107784;107785;107786;107787;107788;107789;107790;107791;107792;107793;107794;107795;107796;107797;107798;107799;107800;107801;107802;107803;107804;107805;107806;107807;107808;107809;107810;107811;107812;107813;107814 107805 43 SLTTLGLVISALADQSAGK Unmodified 1844.0255 0.025493054 2910 Q9NQT8 KIF13B Kinesin-like protein KIF13B yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 82.413 82.412 3 2.7754E-18 27614 20211116_3431_TMUAki_TMT10x_P_F4 157.11 70.625 2516700 3884100 40304 3634600 2905400 3631600 3051600 2378100 2361700 2664800 3191400 2343500 3623300 244140 3725500 2791500 3671700 3066300 2489700 2462300 2590800 3053000 3 3 2 3 3 3 3 3 3 3 3 821870 1281100 0 1227400 732270 1661300 937250 699810 886190 855270 1057100 765180 1195200 59364 1262500 706800 1644000 938400 764690 909840 828900 1014400 1 1 0 1 1 1 1 1 1 1 1 1694800 2603000 40304 2407200 2173200 1970300 2114300 1678300 1475500 1809600 2134400 1578300 2428100 184770 2463000 2084700 2027600 2127900 1725000 1552400 1761900 2038600 2 2 2 2 2 2 2 2 2 2 2 270050000 121690000 148370000 17538 2910 16120 89128;89129 107815;107816;107817 107815 3 SLTTLGLVISSLADQAAGK Unmodified 1844.0255 0.025493054 2784 Q9H1H9;Q9H1H9-2;Q9H1H9-3;Q9H1H9-4 KIF13A Kinesin-like protein KIF13A yes no 0 0 0 0 By MS/MS 4 0 1 1 82.324 82.315 3 3.5503E-06 28077 20211116_3442_TMUAki_TMT10x_S_F4 87.676 29.552 1071600 1742800 0 1512700 1250200 1273500 1327800 918150 938810 1104300 1277000 997760 1625400 85484 1555900 1200300 1304100 1330700 957020 984100 1070900 1221400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1071600 1742800 0 1512700 1250200 1273500 1327800 918150 938810 1104300 1277000 997760 1625400 85484 1555900 1200300 1304100 1330700 957020 984100 1070900 1221400 1 1 0 1 1 1 1 1 1 1 1 148370000 0 148370000 17539 2784 16121 89130 107818 107818 1 SLTYLSILRNPVTNKK Unmodified 1846.0676 0.06763264 584 P09661 SNRPA1 U2 small nuclear ribonucleoprotein A' yes yes 0 0 0 2 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 58.674 59.149 4 5.1788E-15 17869 20211116_3436_TMUAki_TMT10x_P_F8 151.73 128.25 14695000 24627000 284720 26411000 22086000 25609000 18372000 17670000 14285000 16077000 18374000 13685000 22986000 1550000 26806000 21098000 25960000 18703000 18319000 14856000 15767000 17598000 3 3 2 3 3 3 3 3 3 3 3 10412000 17523000 279140 18636000 16533000 22381000 14583000 12967000 10612000 11583000 13141000 9696700 16355000 1171900 18989000 15818000 22358000 14771000 13618000 11059000 11370000 12598000 2 2 1 2 2 2 2 2 2 2 2 4282900 7103900 5573.9 7775000 5552700 3227800 3789800 4702800 3672800 4493500 5232700 3987800 6631200 378060 7816400 5280200 3601900 3932700 4700800 3797000 4397200 4999500 1 1 1 1 1 1 1 1 1 1 1 1756200000 1303800000 452490000 17540 584 16122 89131;89132;89133 107819;107820;107821 107820 3 SLVALLVETQMK Oxidation (M) 1346.7479 0.74793799 2379;2263 Q8TAQ2;Q8TAQ2-2;Q8TAQ2-3;Q92922 SMARCC2;SMARCC1 SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1 no no 0 0 1 0 By MS/MS 1 0 1 1 78.011 78.011 2 3.1686E-05 25481 20211116_3428_TMUAki_TMT10x_P_F1 101.97 72.627 2276000 4009100 0 3169900 2475200 5037200 2895500 3288500 3130200 3197400 3038700 2119000 3737700 178250 3321000 2383000 4977100 2922300 3429100 3170900 3126500 2934200 1 1 0 1 1 1 1 1 1 1 1 2276000 4009100 0 3169900 2475200 5037200 2895500 3288500 3130200 3197400 3038700 2119000 3737700 178250 3321000 2383000 4977100 2922300 3429100 3170900 3126500 2934200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 359550000 359550000 0 17541 2263;2379 16123 89134 107822 107822 2646 1 SLVASLAEPDFVVTDFAK Unmodified 1907.988 0.98804492 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.62 1.44 2 4 7 5 5 3 12 14 80.162 80.16 2;3 3.367E-79 28157 20211116_3446_TMUAki_TMT10x_S_F7 300.55 269.11 169490000 270320000 1032000 239460000 206260000 245360000 212730000 170830000 167170000 178030000 211660000 157810000 252120000 13093000 246560000 197870000 247910000 214030000 177670000 173640000 173580000 202800000 31 31 12 31 31 31 31 31 31 31 31 75089000 117040000 294560 105380000 70963000 131490000 84658000 76861000 74297000 77637000 91085000 69909000 109170000 5405100 108720000 68337000 131120000 84835000 80927000 76634000 75793000 87347000 14 14 4 14 14 14 14 14 14 14 14 94406000 153280000 737430 134080000 135300000 113860000 128070000 93974000 92869000 100390000 120570000 87900000 142950000 7688100 137840000 129540000 116800000 129200000 96742000 97002000 97786000 115460000 17 17 8 17 17 17 17 17 17 17 17 49628000000 22095000000 27534000000 17542 769 16124 89135;89136;89137;89138;89139;89140;89141;89142;89143;89144;89145;89146;89147;89148;89149;89150;89151;89152;89153;89154;89155;89156;89157;89158;89159;89160 107823;107824;107825;107826;107827;107828;107829;107830;107831;107832;107833;107834;107835;107836;107837;107838;107839;107840;107841;107842;107843;107844;107845;107846;107847;107848;107849;107850;107851;107852;107853;107854;107855;107856;107857 107854 35 SLVEASSSGVSVLSLCEK Unmodified 1850.9295 0.92954376 3217 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 yes yes 0 0 0 0 By MS/MS By MS/MS 6.53 0.915 3 4 8 2 9 8 60.715 60.83 2;3 6.4346E-152 21688 20211116_3445_TMUAki_TMT10x_S_F6 411.83 379.57 158010000 251490000 1953200 270310000 164810000 162310000 169580000 105610000 103000000 118320000 166020000 147130000 234740000 13968000 272820000 158200000 170740000 169700000 110610000 109930000 115030000 158200000 21 21 12 21 21 21 21 21 21 21 21 67517000 102540000 982250 110700000 66845000 92692000 69651000 45034000 45024000 49915000 70619000 62867000 95710000 5913800 112090000 64186000 94468000 69741000 48339000 47790000 48549000 67331000 9 9 6 9 9 9 9 9 9 9 9 90490000 148950000 970900 159610000 97964000 69615000 99927000 60572000 57972000 68403000 95402000 84258000 139020000 8054300 160730000 94011000 76267000 99959000 62276000 62141000 66483000 90873000 12 12 6 12 12 12 12 12 12 12 12 24847000000 11484000000 13364000000 17543 3217 16125 89161;89162;89163;89164;89165;89166;89167;89168;89169;89170;89171;89172;89173;89174;89175;89176;89177 107858;107859;107860;107861;107862;107863;107864;107865;107866;107867;107868;107869;107870;107871;107872;107873;107874;107875;107876;107877;107878;107879;107880;107881;107882 107875 25 SLVEIADTVPK Unmodified 1170.6496 0.64960415 84 O00410;O00410-2;O00410-3 IPO5 Importin-5 yes no 0 0 0 0 By MS/MS By MS/MS 4.88 0.781 3 3 2 4 4 62.801 62.827 2;3 4.7944E-06 20132 20211116_3442_TMUAki_TMT10x_S_F4 115.57 82.486 52796000 88863000 348410 93707000 62906000 79401000 58460000 50749000 48818000 52300000 65010000 49157000 82937000 4321200 95040000 60192000 81127000 59233000 53090000 50661000 51015000 62211000 4 4 2 4 4 4 4 4 4 4 4 32652000 53827000 309480 57736000 43189000 60904000 39385000 30621000 29437000 32038000 40571000 30402000 50241000 2846900 58671000 41315000 61169000 39841000 32704000 30778000 31232000 38792000 2 2 1 2 2 2 2 2 2 2 2 20144000 35036000 38935 35971000 19717000 18496000 19075000 20128000 19381000 20262000 24439000 18754000 32696000 1474400 36369000 18877000 19957000 19392000 20386000 19883000 19783000 23419000 2 2 1 2 2 2 2 2 2 2 2 2676700000 1402700000 1274000000 17544 84 16126 89178;89179;89180;89181;89182;89183;89184;89185 107883;107884;107885;107886;107887;107888;107889;107890 107887 8 SLVEIIEHGLVDEQQK Unmodified 1835.9629 0.9628928 345 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 3 4 77.992 77.94 3 4.551E-29 25630 20211116_3440_TMUAki_TMT10x_S_F2 185.67 157.7 42308000 72202000 902500 66768000 48048000 65264000 53037000 42844000 41294000 46824000 53617000 39398000 67352000 4260800 68476000 46240000 66076000 53173000 44811000 42961000 45567000 51341000 8 8 6 8 8 8 8 8 8 8 8 21934000 35470000 505460 33489000 21667000 41722000 27321000 21288000 20365000 23362000 26454000 20425000 33090000 2181300 34427000 20942000 41536000 27202000 22737000 21238000 22731000 25331000 4 4 3 4 4 4 4 4 4 4 4 20374000 36731000 397040 33279000 26381000 23542000 25715000 21556000 20929000 23461000 27162000 18973000 34261000 2079500 34048000 25298000 24539000 25971000 22074000 21723000 22835000 26010000 4 4 3 4 4 4 4 4 4 4 4 8108200000 3596900000 4511300000 17545 345 16127 89186;89187;89188;89189;89190;89191;89192 107891;107892;107893;107894;107895;107896;107897;107898 107896 8 SLVEPKEDEKGDDVDDPENQNSALADTDASGGLTK Unmodified 3658.6606 0.66058194 1501 Q02952;Q02952-3;Q02952-2 AKAP12 A-kinase anchor protein 12 yes no 0 0 0 2 By MS/MS By matching 2.33 0.471 2 1 1 2 54.49 54.215 4 2.4225E-16 17339 20211116_3429_TMUAki_TMT10x_P_F2 109.71 104.22 1753700 3136500 17238 3823400 5282000 6754000 3686100 3930800 4273200 3044100 3157100 1633000 2929200 210880 3895800 5025500 6636300 3840600 4112500 4281900 3009600 3080100 1 1 1 1 1 1 1 1 1 1 1 1753700 3136500 17238 3823400 5282000 6754000 3686100 3930800 4273200 3044100 3157100 1633000 2929200 210880 3895800 5025500 6636300 3840600 4112500 4281900 3009600 3080100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1667200000 954590000 712630000 17546 1501 16128 89193;89194;89195 107899 107899 1 SLVGKDVVVELK Unmodified 1284.7653 0.76530261 3260 Q9Y333 LSM2 U6 snRNA-associated Sm-like protein LSm2 yes yes 0 0 0 1 By MS/MS 7 0 1 1 57.768 58.291 3 3.3587E-05 19200 20211116_3446_TMUAki_TMT10x_S_F7 90.334 38.56 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17547 3260 16129 89196 107900 107900 1 SLVIELDK Unmodified 915.5277 0.5276981 2475 Q96GM5;Q96GM5-2;Q92925;Q6STE5;Q6STE5-2;Q92925-3;Q92925-2 SMARCD1;SMARCD2;SMARCD3 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 yes no 0 0 0 0 By MS/MS 5 0 1 1 60.603 60.703 2 0.0031247 17906 20211116_3444_TMUAki_TMT10x_S_F5 99.802 45.394 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17548 2475 16130 89197 107901 107901 1 SLVIPEK Acetyl (Protein N-term) 826.48002 0.48001963 1345 P62269 RPS18 40S ribosomal protein S18 yes yes 1 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 60.876 60.603 2 0.017358 20342 20211116_3430_TMUAki_TMT10x_P_F3 47.743 36.332 12297000 18873000 0 22184000 14106000 13113000 10794000 12992000 15351000 12386000 15764000 11449000 17623000 917110 22262000 13434000 13915000 11263000 13198000 15432000 12122000 15194000 3 3 0 3 3 3 3 3 3 3 3 3524500 5211100 0 6137900 7483800 6897500 3720500 3704000 4156500 3153400 4347200 3281300 4866000 302530 6207600 7078200 6908100 3984100 3910700 4216200 3102500 4187700 1 1 0 1 1 1 1 1 1 1 1 8773000 13662000 0 16046000 6622200 6215500 7073800 9288300 11195000 9232300 11417000 8167900 12757000 614580 16054000 6355700 7007300 7279200 9286900 11216000 9019100 11006000 2 2 0 2 2 2 2 2 2 2 2 2304500000 907800000 1396700000 17549 1345 16131 89198;89199;89200 107902;107903;107904 107902 3 SLVIPEKFQHILR Acetyl (Protein N-term) 1620.9352 0.9351619 1345 P62269 RPS18 40S ribosomal protein S18 yes yes 1 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 72.057 71.876 3 0.00013825 23148 20211116_3440_TMUAki_TMT10x_S_F2 58.487 39.756 3597800 6653400 20539 4883300 7041000 8606900 5234100 11368000 8069100 7315900 7129500 3350000 6201700 358230 5162500 6706600 8600500 5491400 11297000 8051600 7312100 6906600 2 2 1 2 2 2 2 2 2 2 2 1806700 3391600 0 2245600 2307200 6143800 3123800 6780900 4799900 4111700 4148100 1682200 3160400 149390 2430100 2232300 6032800 3177800 6782300 4786600 4125700 4021700 1 1 0 1 1 1 1 1 1 1 1 1791100 3261800 20539 2637700 4733800 2463100 2110300 4586900 3269200 3204300 2981400 1667800 3041300 208850 2732400 4474300 2567700 2313600 4515000 3264900 3186400 2884900 1 1 1 1 1 1 1 1 1 1 1 900780000 449620000 451170000 17550 1345 16132 89201;89202 107905;107906 107906 2 SLVQDSLSTNSSDLVAPSPDAFR Unmodified 2405.171 0.17104767 1573 Q12888;Q12888-3;Q12888-2 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 2 2 70.654 70.701 3 2.5386E-16 23143 20211116_3433_TMUAki_TMT10x_P_F5 139.26 127.96 5300300 9099900 110440 8313100 6355000 8834700 7053100 6427300 6115300 6334000 7439600 4935900 8488200 554330 8544100 6117500 8913900 7088800 6653500 6309300 6189900 7135700 4 4 3 4 4 4 4 4 4 4 4 2786200 4554700 25341 4499600 2996200 5618700 3750000 3280600 3151300 3219600 3840600 2594400 4249800 254750 4610900 2893200 5602400 3745800 3451700 3256500 3146900 3683600 2 2 1 2 2 2 2 2 2 2 2 2514200 4545200 85103 3813600 3358800 3216000 3303200 3146700 2964100 3114400 3599000 2341600 4238400 299580 3933200 3224300 3311600 3343000 3201900 3052800 3043000 3452200 2 2 2 2 2 2 2 2 2 2 2 1402600000 910310000 492250000 17551 1573 16133 89203;89204;89205;89206 107907;107908;107909;107910;107911 107908 5 SLVSVTK Unmodified 732.43815 0.43815481 553;1914 P08238;Q58FF7;Q58FF8 HSP90AB1;HSP90AB3P;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 2 no no 0 0 0 0 By MS/MS By MS/MS 5.2 2.52 2 1 1 2 2 2 6 4 41.135 41.316 2 0.0051571 11941 20211116_3446_TMUAki_TMT10x_S_F7 109.86 20.92 75096000 113490000 3592100 135850000 220500000 177280000 105750000 131990000 140410000 100530000 137480000 69949000 105980000 11610000 137150000 208740000 177030000 113810000 135550000 141150000 99478000 132720000 9 9 9 8 9 9 8 9 8 9 9 45823000 67400000 1989500 76024000 193810000 144710000 68363000 82563000 86477000 60012000 81583000 42681000 62923000 7725800 77502000 182790000 141780000 75930000 86406000 86933000 59540000 78851000 4 4 4 3 4 4 3 4 3 4 4 29273000 46090000 1602700 59823000 26686000 32575000 37387000 49431000 53935000 40517000 55902000 27268000 43058000 3884300 59652000 25954000 35244000 37876000 49140000 54216000 39938000 53866000 5 5 5 5 5 5 5 5 5 5 5 8425000000 4906800000 3518300000 17552 553;1914 16134 89207;89208;89209;89210;89211;89212;89213;89214;89215;89216 107912;107913;107914;107915;107916;107917;107918;107919;107920;107921 107919 10 SLYASSPGGVYATR Unmodified 1427.7045 0.70449327 561 P08670 VIM Vimentin yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 4 4 4 4 42.31 42.633 2;3 1.5099E-60 10530 20211116_3447_TMUAki_TMT10x_S_F8 307.55 254.83 15894000 25865000 52274 31791000 23471000 21476000 17742000 22482000 26671000 20096000 24353000 14798000 24157000 1361000 31859000 22357000 22538000 18573000 22736000 26660000 19726000 23564000 9 9 4 9 9 9 9 9 9 9 9 4864500 8120900 18160 9043600 13265000 12369000 7466000 6729400 8100300 6011300 7151400 4529200 7581100 504050 9210500 12572000 12269000 7896000 7105100 8179200 5900600 6928000 4 4 2 4 4 4 4 4 4 4 4 11029000 17744000 34115 22747000 10206000 9107600 10276000 15753000 18571000 14085000 17201000 10269000 16576000 856920 22649000 9784800 10269000 10677000 15631000 18481000 13825000 16636000 5 5 2 5 5 5 5 5 5 5 5 1813600000 1103900000 709700000 17553 561 16135 89217;89218;89219;89220;89221;89222;89223;89224 107922;107923;107924;107925;107926;107927;107928 107927 7 SLYDEVAAQGEVVR Unmodified 1534.7627 0.76273643 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 0 By MS/MS 3 0 1 1 57.018 56.623 2 1.9173E-13 19831 20211116_3441_TMUAki_TMT10x_S_F3 127.37 109.21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17554 542 16136 89225 107929 107929 1 SLYDEVAAQGEVVRK Unmodified 1662.8577 0.85769944 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 1 By MS/MS By MS/MS 4.73 0.75 5 4 2 6 5 52.754 52.893 3;4 6.4111E-32 14610 20211116_3434_TMUAki_TMT10x_P_F6 218.63 177.9 55001000 90601000 460190 100920000 74125000 74916000 57487000 61526000 64848000 61245000 72932000 51213000 84579000 5102900 101830000 70674000 77622000 59409000 63223000 65937000 59827000 70105000 10 10 5 10 10 10 10 10 10 10 10 22308000 35651000 46679 40343000 42762000 50532000 31621000 24923000 26555000 25075000 27895000 20771000 33284000 2140900 40977000 40723000 50274000 32500000 26637000 27284000 24483000 26868000 4 4 1 4 4 4 4 4 4 4 4 32693000 54950000 413510 60574000 31363000 24384000 25866000 36604000 38293000 36170000 45037000 30443000 51295000 2962000 60857000 29951000 27348000 26909000 36586000 38652000 35343000 43237000 6 6 4 6 6 6 6 6 6 6 6 5205900000 2443000000 2762800000 17555 542 16137 89226;89227;89228;89229;89230;89231;89232;89233;89234;89235;89236 107930;107931;107932;107933;107934;107935;107936;107937;107938;107939;107940;107941 107935 12 SLYGDLDSALSAEELADAPHSR Unmodified 2316.087 0.086983692 399 O94964;O94964-2;O94964-4 SOGA1 Protein SOGA1;N-terminal form;C-terminal 80 kDa form yes no 0 0 0 0 By MS/MS 1 0 1 1 68.657 68.657 3 0.0019139 21637 20211116_3428_TMUAki_TMT10x_P_F1 60.735 51.451 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17556 399 16138 89237 107942 107942 1 SLYICDPFSGVVFDHLKK Unmodified 2124.0714 0.071397389 2341 Q92547 TOPBP1 DNA topoisomerase 2-binding protein 1 yes yes 0 0 0 1 By MS/MS 2 0 1 1 76.319 76.244 4 0.00015149 26247 20211116_3429_TMUAki_TMT10x_P_F2 72.184 61.716 6573500 10889000 233500 9809200 6093900 9920300 6993400 5045600 5075800 6186100 6696800 6122300 10157000 755890 10085000 5879900 9989800 6987300 5410200 5305200 5994700 6410000 1 1 1 1 1 1 1 1 1 1 1 6573500 10889000 233500 9809200 6093900 9920300 6993400 5045600 5075800 6186100 6696800 6122300 10157000 755890 10085000 5879900 9989800 6987300 5410200 5305200 5994700 6410000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 650780000 650780000 0 17557 2341 16139 89238 107943 107943 1 SLYQSAGVAPESFEYIEAHGTGTK Unmodified 2541.2023 0.2023478 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 2 4 4 5 5 63.272 63.311 3;4 3.9462E-60 20327 20211116_3442_TMUAki_TMT10x_S_F4 225.84 211.82 52161000 97087000 477370 91903000 53784000 85595000 51429000 61544000 65971000 65896000 65937000 48566000 90573000 4236700 94028000 51504000 87047000 52740000 63918000 66477000 64178000 63608000 14 14 8 14 14 14 14 14 14 14 14 24300000 42453000 276070 39324000 22536000 51960000 25297000 31214000 32657000 30679000 30165000 22626000 39601000 1931800 40526000 21674000 51688000 25743000 32767000 32813000 29985000 29176000 7 7 3 7 7 7 7 7 7 7 7 27861000 54634000 201290 52580000 31247000 33635000 26133000 30330000 33314000 35217000 35772000 25941000 50972000 2304900 53502000 29830000 35359000 26997000 31151000 33664000 34194000 34431000 7 7 5 7 7 7 7 7 7 7 7 10437000000 5788100000 4649300000 17558 1092 16140 89239;89240;89241;89242;89243;89244;89245;89246;89247;89248 107944;107945;107946;107947;107948;107949;107950;107951;107952;107953;107954;107955;107956;107957 107951 14 SLYVAEYHSEPVEDEKP Unmodified 1990.916 0.91600218 810 P26196 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 48.855 48.582 3 8.5986E-08 14981 20211116_3429_TMUAki_TMT10x_P_F2 114.01 99.842 7338800 13544000 256250 18152000 17621000 26247000 13120000 13579000 16984000 14277000 11488000 6834900 12655000 972330 18314000 16797000 25955000 13663000 14466000 16914000 13914000 11252000 3 3 2 3 3 3 3 3 3 3 3 7338800 13544000 256250 18152000 17621000 26247000 13120000 13579000 16984000 14277000 11488000 6834900 12655000 972330 18314000 16797000 25955000 13663000 14466000 16914000 13914000 11252000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1524400000 1524400000 0 17559 810 16141 89249;89250 107958;107959;107960;107961 107959 4 SLYYYIQQDTKGDYQK Unmodified 2011.9527 0.95272204 537 P07355;P07355-2;A6NMY6 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 0 0 0 1 By MS/MS 7 0 1 1 60.849 61.342 3 0.00019749 20440 20211116_3446_TMUAki_TMT10x_S_F7 76.85 67.27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17560 537 16142 89251 107962 107962 1 SMDFEEAERSEPTQALELTEDDIKEDGIVPLR Oxidation (M) 3677.7254 0.72543081 213 O43396 TXNL1 Thioredoxin-like protein 1 yes yes 0 0 1 2 By MS/MS 1 0 1 1 76.29 76.29 4 2.0667E-07 24734 20211116_3428_TMUAki_TMT10x_P_F1 81.28 76.224 6301500 10820000 0 9041300 5417400 13764000 7044900 8954100 9210200 8665200 9051800 5867200 10089000 494380 9419800 5234300 13622000 7127800 9338000 9269500 8474800 8736800 1 1 0 1 1 1 1 1 1 1 1 6301500 10820000 0 9041300 5417400 13764000 7044900 8954100 9210200 8665200 9051800 5867200 10089000 494380 9419800 5234300 13622000 7127800 9338000 9269500 8474800 8736800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2290300000 2290300000 0 17561 213 16143 89252 107963 107963 171 1 SMDFEEAERSEPTQALELTEDDIKEDGIVPLR Unmodified 3661.7305 0.73051618 213 O43396 TXNL1 Thioredoxin-like protein 1 yes yes 0 0 0 2 By MS/MS 1 0 1 1 77.426 77.374 4 1.3141E-10 27160 20211116_3439_TMUAki_TMT10x_S_F1 97.257 92.4 7437000 13604000 235150 12940000 11377000 7305400 10071000 4615400 3672900 5047300 8993900 6926400 12692000 890920 13164000 10890000 7729400 10085000 4841300 4205300 4911700 8511300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7437000 13604000 235150 12940000 11377000 7305400 10071000 4615400 3672900 5047300 8993900 6926400 12692000 890920 13164000 10890000 7729400 10085000 4841300 4205300 4911700 8511300 1 1 1 1 1 1 1 1 1 1 1 1290000000 0 1290000000 17562 213 16143 89253 107964 107964 1 SMEAEMIQLQEELAAAER 2 Oxidation (M) 2079.9453 0.94527018 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 2 0 By MS/MS By MS/MS 1 0 3 2 1 61.007 60.864 2;3 2.7506E-17 18400 20211116_3428_TMUAki_TMT10x_P_F1 144.3 132.83 11392000 18884000 171690 16799000 14007000 21181000 13183000 18716000 17473000 16793000 16132000 10609000 17613000 800630 17350000 13420000 21252000 13548000 19096000 17541000 16480000 15603000 7 7 4 7 7 7 7 7 7 7 7 7109400 11025000 54408 8710800 8275400 15374000 7935400 10684000 10626000 9396400 9269800 6619800 10279000 461320 9149500 7928700 15145000 8150300 11061000 10644000 9230000 8984200 4 4 2 4 4 4 4 4 4 4 4 4283100 7858900 117280 8088000 5732100 5807800 5247200 8031600 6847600 7397000 6861800 3988800 7334100 339310 8200800 5491100 6107200 5397300 8034800 6896700 7250400 6618900 3 3 2 3 3 3 3 3 3 3 3 2318700000 1163100000 1155600000 17563 934 16144 89254;89255;89256 107965;107966;107967;107968;107969;107970;107971;107972 107966 1182;1183 8 SMEAEMIQLQEELAAAER Oxidation (M) 2063.9504 0.95035556 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 1 0 By MS/MS By MS/MS 1 0 3 1 2 71.101 71.101 3 4.3353E-08 22655 20211116_3428_TMUAki_TMT10x_P_F1 102.84 92.643 4771600 6593100 65457 7090700 5781800 9710900 6202000 4998900 4607700 5288300 6325800 4443400 6153900 470750 7237700 5558400 9625300 6219600 5329000 4818300 5152900 6049100 2 2 2 2 2 2 2 2 2 2 2 4771600 6593100 65457 7090700 5781800 9710900 6202000 4998900 4607700 5288300 6325800 4443400 6153900 470750 7237700 5558400 9625300 6219600 5329000 4818300 5152900 6049100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 353510000 353510000 0 17564 934 16144 89257;89258;89259 107973;107974;107975;107976 107973 1182;1183 4 SMEAEMIQLQEELAAAER Unmodified 2047.9554 0.95544093 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS 1 0 1 1 79.542 79.506 3 1.4586E-08 28032 20211116_3439_TMUAki_TMT10x_S_F1 115.34 100.1 3389800 5832700 7631.8 5244900 3959500 3088100 4531400 3051400 2764800 3270100 4446500 3156100 5440300 269170 5359900 3809600 3278200 4511800 3110900 2949600 3184700 4237300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3389800 5832700 7631.8 5244900 3959500 3088100 4531400 3051400 2764800 3270100 4446500 3156100 5440300 269170 5359900 3809600 3278200 4511800 3110900 2949600 3184700 4237300 2 2 1 2 2 2 2 2 2 2 2 575780000 0 575780000 17565 934 16144 89260 107977;107978 107977 2 SMEIEVLVDADPVVDSSQKR Oxidation (M) 2232.0944 0.094377255 64 O00154-4;O00154;O00154-6;O00154-7;O00154-5 ACOT7 Cytosolic acyl coenzyme A thioester hydrolase yes no 0 0 1 1 By MS/MS By MS/MS 2.17 1.07 2 2 1 1 2 4 63.049 62.862 3 3.3131E-13 21315 20211116_3439_TMUAki_TMT10x_S_F1 134.24 120.41 22012000 37342000 112000 33877000 25920000 40549000 26702000 30020000 29299000 28819000 29644000 20495000 34831000 1838300 34905000 24871000 40661000 27124000 31018000 29705000 28195000 28585000 7 7 3 7 7 7 7 7 7 7 7 13582000 21894000 79459 19915000 14945000 29668000 17077000 17000000 16773000 16839000 17644000 12646000 20422000 1111700 20602000 14381000 29338000 17201000 17919000 17108000 16452000 16994000 4 4 2 4 4 4 4 4 4 4 4 8430100 15448000 32538 13962000 10976000 10881000 9624300 13020000 12526000 11980000 11999000 7849200 14409000 726620 14302000 10490000 11323000 9922800 13099000 12597000 11743000 11592000 3 3 1 3 3 3 3 3 3 3 3 5079100000 2300000000 2779000000 17566 64 16145 89261;89262;89263;89264;89265;89266 107979;107980;107981;107982;107983;107984;107985;107986 107983 35 8 SMEMLVEHQAHDILT Unmodified 1752.8175 0.81749089 3195 Q9UNM6;Q9UNM6-2 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 0 0 0 0 By MS/MS By MS/MS 2 0.816 1 1 1 1 2 62.897 62.556 3 0.00011502 19449 20211116_3440_TMUAki_TMT10x_S_F2 82.102 72.181 5445800 9973100 187830 8800100 6523800 5718700 6550300 7123900 6480700 7053200 8074700 5072000 9301600 641650 9014300 6267400 6047500 6640700 7170000 6652600 6891500 7740100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5445800 9973100 187830 8800100 6523800 5718700 6550300 7123900 6480700 7053200 8074700 5072000 9301600 641650 9014300 6267400 6047500 6640700 7170000 6652600 6891500 7740100 2 2 2 2 2 2 2 2 2 2 2 384450000 0 384450000 17567 3195 16146 89267;89268;89269 107987;107988;107989 107988 3 SMEMLVEHQAHDILT Oxidation (M) 1768.8124 0.81240551 3195 Q9UNM6;Q9UNM6-2 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 0 0 1 0 By MS/MS By MS/MS 2.8 0.748 2 2 1 2 3 47.528 47.343 3 0.0024231 13246 20211116_3440_TMUAki_TMT10x_S_F2 61.732 49.372 5979600 9561500 67950 10328000 10239000 11642000 7076600 8129200 8599100 7412600 8356500 5567800 8924700 587350 10501000 9739900 11700000 7390600 8421000 8672900 7269100 8068700 5 5 4 5 5 5 5 5 5 5 5 3996700 6289700 42988 6945000 8470800 10024000 5530500 5408300 5814400 5069900 5491700 3721600 5871400 434080 7084800 8050900 9918300 5772400 5721700 5891300 4965500 5307600 3 3 3 3 3 3 3 3 3 3 3 1982900 3271700 24962 3382600 1767900 1617900 1546100 2720800 2784700 2342700 2864800 1846200 3053300 153270 3416600 1689100 1781800 1618300 2699400 2781600 2303600 2761100 2 2 1 2 2 2 2 2 2 2 2 765780000 404390000 361400000 17568 3195 16146 89270;89271;89272;89273;89274 107990;107991;107992;107993;107994;107995 107993 3185;3186 6 SMEMLVEHQAHDILT 2 Oxidation (M) 1784.8073 0.80732013 3195 Q9UNM6;Q9UNM6-2 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 0 0 2 0 By MS/MS By MS/MS 2.75 0.829 2 1 1 1 3 43.28 43.248 3 0.010264 11484 20211116_3440_TMUAki_TMT10x_S_F2 54.393 42.033 2495000 4033400 1170.6 4689300 2315400 1845700 1928700 3575200 3734200 2753100 3701100 2322800 3766100 162010 4695000 2207700 2094500 2032500 3523100 3718800 2722700 3571400 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2495000 4033400 1170.6 4689300 2315400 1845700 1928700 3575200 3734200 2753100 3701100 2322800 3766100 162010 4695000 2207700 2094500 2032500 3523100 3718800 2722700 3571400 3 3 1 3 3 3 3 3 3 3 3 334540000 0 334540000 17569 3195 16146 89275;89276;89277;89278 107996;107997;107998 107997 3185;3186 3 SMEVSTQLAR Unmodified 1120.5547 0.55465791 3219 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 0 By MS/MS 4 0 3 3 34.447 34.528 2 5.5665E-09 8778 20211116_3442_TMUAki_TMT10x_S_F4 150.27 84.194 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17570 3219 16147 89279;89280;89281 107999;108000;108001 108000 3 SMEVSTQLAR Oxidation (M) 1136.5496 0.54957253 3219 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 1 0 By matching By MS/MS 4.5 0.5 1 1 1 1 31.725 31.81 2 0.022831 6237 20211116_3444_TMUAki_TMT10x_S_F5 62.558 45.172 58472 85248 0 110860 63916 41936 60774 25291 21983 28155 66626 54433 79641 3611 110260 61121 46599 60609 26640 25646 27380 62890 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 58472 85248 0 110860 63916 41936 60774 25291 21983 28155 66626 54433 79641 3611 110260 61121 46599 60609 26640 25646 27380 62890 1 1 0 1 1 1 1 1 1 1 1 26380000 20035000 6344900 17571 3219 16147 89282;89283 108002 108002 3209 1 SMGFIGHYLDQK Oxidation (M) 1410.6602 0.66018561 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 1 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 49.244 49.797 3 0.0086054 15237 20211116_3435_TMUAki_TMT10x_P_F7 59.227 44.537 13203000 22711000 212390 24045000 18794000 23163000 14481000 22940000 24312000 21173000 20311000 12295000 21196000 1370900 24422000 17925000 23646000 15218000 23282000 24161000 20751000 19717000 3 3 3 3 3 3 3 3 3 3 3 5108900 8629100 188950 9760800 9978200 14720000 6758900 8620600 9240100 8220400 7829100 4758300 8056100 667850 9951800 9498100 14553000 7100900 9060700 9241600 8044900 7596100 1 1 1 1 1 1 1 1 1 1 1 8094400 14081000 23441 14284000 8816000 8443000 7721700 14320000 15072000 12953000 12482000 7536900 13140000 703030 14470000 8427100 9093500 8117200 14222000 14919000 12706000 12121000 2 2 2 2 2 2 2 2 2 2 2 1240800000 565110000 675720000 17572 1200 16148 89284;89285;89286 108003;108004;108005;108006 108004 1610 4 SMGFIGHYLDQK Unmodified 1394.6653 0.66527099 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 59.048 59.133 3 0.0007062 17270 20211116_3447_TMUAki_TMT10x_S_F8 78.763 52.165 19787000 32774000 268580 36112000 22212000 25630000 19717000 23437000 19232000 20924000 24207000 18426000 30594000 1915500 36448000 21251000 26707000 20115000 23864000 19763000 20539000 23198000 4 4 3 4 4 4 4 4 4 4 4 5733800 9225600 175890 10981000 7778500 11351000 7106900 6279100 4896500 5588300 6614500 5340100 8615100 667940 11084000 7452100 11427000 7175500 6619500 5139100 5486300 6327600 1 1 1 1 1 1 1 1 1 1 1 14053000 23549000 92684 25132000 14433000 14279000 12610000 17158000 14336000 15336000 17592000 13085000 21979000 1247500 25364000 13798000 15280000 12939000 17245000 14624000 15053000 16870000 3 3 2 3 3 3 3 3 3 3 3 1007900000 461900000 545980000 17573 1200 16148 89287;89288 108007;108008;108009;108010 108008 4 SMGFIGHYLDQKR Oxidation (M) 1566.7613 0.76129664 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 1 1 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 43.203 43.143 4 0.0001211 11169 20211116_3428_TMUAki_TMT10x_P_F1 90.689 75.117 7107900 11415000 107140 12401000 8202300 8638200 7803800 9149500 10589000 8629000 10046000 6618800 10655000 676920 12525000 7859400 9043600 8022800 9261200 10631000 8449000 9707800 4 4 3 4 4 4 4 4 4 4 4 1520100 2097700 0 2540100 2894100 3858200 1876300 2338800 2651200 2048200 2165700 1415100 1959000 117710 2579700 2747700 3815100 1980400 2445900 2646000 2012300 2104200 1 1 0 1 1 1 1 1 1 1 1 5587900 9317200 107140 9860700 5308200 4780000 5927600 6810700 7937800 6580800 7880300 5203600 8696000 559200 9945200 5111800 5228600 6042400 6815300 7985300 6436600 7603700 3 3 3 3 3 3 3 3 3 3 3 501860000 319810000 182050000 17574 1200 16149 89289;89290;89291 108011;108012;108013;108014 108011 1610 4 SMGFIGHYLDQKR Unmodified 1550.7664 0.76638202 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 1 By matching By MS/MS 3 0 2 1 1 52.182 51.935 4 0.055766 17959 20211116_3441_TMUAki_TMT10x_S_F3 38.399 27.453 1523400 2428000 0 2567000 1507900 1163200 1276000 1449400 1226100 1524200 1838100 1418200 2266100 102020 2587900 1438400 1278000 1304900 1461400 1271300 1485500 1754200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1523400 2428000 0 2567000 1507900 1163200 1276000 1449400 1226100 1524200 1838100 1418200 2266100 102020 2587900 1438400 1278000 1304900 1461400 1271300 1485500 1754200 1 1 0 1 1 1 1 1 1 1 1 310630000 169080000 141540000 17575 1200 16149 89292;89293 108015 108015 1 SMGGTLDLYSIDEHFQPK Oxidation (M) 2052.9463 0.94625646 2197 Q8N543;Q8N543-2 OGFOD1 Prolyl 3-hydroxylase OGFOD1 yes no 0 0 1 0 By MS/MS By MS/MS 6 0 2 1 1 62.563 62.541 3 2.1542E-06 19026 20211116_3445_TMUAki_TMT10x_S_F6 97.129 80.445 1460100 2561400 0 2481800 1747200 1746100 1560100 2486100 2324600 2167800 2078600 1359400 2389800 117050 2526500 1670100 1840900 1615900 2480900 2322700 2130300 2012800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1460100 2561400 0 2481800 1747200 1746100 1560100 2486100 2324600 2167800 2078600 1359400 2389800 117050 2526500 1670100 1840900 1615900 2480900 2322700 2130300 2012800 1 1 0 1 1 1 1 1 1 1 1 283440000 0 283440000 17576 2197 16150 89294;89295 108016;108017 108017 2627 2 SMIEISR Oxidation (M) 850.42185 0.42185282 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 1 0 By MS/MS By MS/MS 3.86 1.81 1 1 1 1 1 2 5 2 32.008 31.957 2 0.034748 8275 20211116_3429_TMUAki_TMT10x_P_F2 83.753 29.141 3848800 5916300 17865 5933200 6059700 6556900 4571100 4076800 4447200 3895800 4968000 3583500 5520600 333560 6061000 5772000 6585600 4710700 4264800 4548200 3812300 4776300 7 7 2 7 7 7 7 7 7 7 7 3030000 4640100 17865 4730300 5188700 5612900 3665400 3219700 3458900 3054300 3926000 2821200 4330000 272150 4832500 4936300 5609800 3791300 3389400 3544500 2989800 3772800 5 5 2 5 5 5 5 5 5 5 5 818790 1276200 0 1202900 871010 944040 905670 857070 988310 841510 1042000 762340 1190600 61415 1228500 835710 975740 919410 875330 1003700 822500 1003500 2 2 0 2 2 2 2 2 2 2 2 422850000 243040000 179810000 17577 1094 16151 89296;89297;89298;89299;89300;89301;89302 108018;108019;108020 108018 1454 3 SMIEISR Unmodified 834.42694 0.4269382 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 38.199 38.206 2 0.013882 9923 20211116_3431_TMUAki_TMT10x_P_F4 89.752 31.148 7046500 10469000 46790 12535000 9286000 6838400 7223200 4877000 4348000 4670300 7647800 6561200 9776500 650070 12556000 8854200 7273800 7345600 5051400 4666300 4569800 7275500 5 5 3 5 5 5 5 5 5 5 5 3164500 4802500 35831 5700700 5703900 4174300 3625700 1943600 1525900 1860300 3271800 2946700 4484600 328570 5729400 5418900 4296600 3721400 2086200 1706200 1820300 3102100 2 2 1 2 2 2 2 2 2 2 2 3881900 5666600 10959 6834200 3582000 2664000 3597400 2933400 2822100 2810100 4376100 3614500 5291900 321510 6827100 3435300 2977200 3624200 2965200 2960100 2749500 4173300 3 3 2 3 3 3 3 3 3 3 3 387120000 131580000 255530000 17578 1094 16151 89303;89304;89305;89306;89307;89308 108021;108022;108023;108024;108025;108026 108022 6 SMLAALIAAQATALNR Unmodified 1613.8923 0.89231081 2163 Q8IY67-2;Q8IY67 RAVER1 Ribonucleoprotein PTB-binding 1 yes no 0 0 0 0 By MS/MS 8 0 1 1 80.043 80.047 2 1.8235E-14 26416 20211116_3436_TMUAki_TMT10x_P_F8 126.09 91.199 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17579 2163 16152 89309 108027 108027 1 SMLDQLGVPLYAVVK Unmodified 1631.8957 0.89566485 2646 Q9BRX8;Q9BRX8-2 FAM213A Redox-regulatory protein FAM213A yes no 0 0 0 0 By MS/MS 2 0 1 1 79.752 79.735 3 0.097357 27623 20211116_3429_TMUAki_TMT10x_P_F2 31.876 14.85 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17580 2646 16153 89310 108028 108028 1 SMLDQLGVPLYAVVK Oxidation (M) 1647.8906 0.89057948 2646 Q9BRX8;Q9BRX8-2 FAM213A Redox-regulatory protein FAM213A yes no 0 0 1 0 By MS/MS By matching 8 0 3 2 1 77.571 77.558 2;3 0.00018465 25425 20211116_3436_TMUAki_TMT10x_P_F8 80.706 61.128 9082200 15359000 63547 14108000 8468300 17139000 10486000 10279000 10437000 9422600 11199000 8456900 14327000 803600 14526000 8174300 17119000 10529000 10771000 10647000 9237900 10780000 2 2 2 2 2 2 2 2 2 2 2 9082200 15359000 63547 14108000 8468300 17139000 10486000 10279000 10437000 9422600 11199000 8456900 14327000 803600 14526000 8174300 17119000 10529000 10771000 10647000 9237900 10780000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1930200000 1596200000 333960000 17581 2646 16153 89311;89312;89313 108029;108030 108029 2879 2 SMMGGGLAEIPGLSINFAK 2 Oxidation (M) 1923.9434 0.94341968 1161 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 2 0 By MS/MS 8 0 1 1 77.328 77.277 3 0.0018848 24710 20211116_3447_TMUAki_TMT10x_S_F8 60.564 41.969 2718400 5304200 55388 4313800 4631400 4293000 4177500 4155900 3902800 3796700 4621300 2531500 4945700 303790 4470500 4432800 4371600 4252600 4221600 4008000 3722900 4435700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2718400 5304200 55388 4313800 4631400 4293000 4177500 4155900 3902800 3796700 4621300 2531500 4945700 303790 4470500 4432800 4371600 4252600 4221600 4008000 3722900 4435700 1 1 1 1 1 1 1 1 1 1 1 639670000 0 639670000 17582 1161 16154 89314 108031 108031 1546;1547 1 SMPIRKDDEVQVVR Oxidation (M) 1686.8723 0.87230365 1306 P61254;Q9UNX3 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 0 0 1 2 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 32.349 32.393 3;4 0.0010362 6459 20211116_3444_TMUAki_TMT10x_S_F5 73.834 56.613 1734400 2721500 14359 2888800 4075600 3250300 1971500 1858800 2108400 1588100 2284200 1614900 2540000 171750 2940600 3854700 3257600 2114000 1952000 2145200 1562200 2198000 4 4 2 4 4 4 4 4 4 4 4 1439000 2294900 2738.9 2368300 3830200 3058400 1686100 1733600 1983200 1431300 1975600 1339700 2141700 137130 2421200 3617600 3043400 1831600 1820400 2004300 1410300 1906000 3 3 1 3 3 3 3 3 3 3 3 295450 426570 11620 520460 245470 191900 285400 125200 125180 156810 308580 275180 398390 34624 519410 237080 214260 282450 131610 140870 151850 292000 1 1 1 1 1 1 1 1 1 1 1 322370000 282640000 39737000 17583 1306 16155 89315;89316;89317 108032;108033;108034;108035 108035 1765 4 SMPIRKDDEVQVVR Unmodified 1670.8774 0.87738903 1306 P61254;Q9UNX3 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 0 0 0 2 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 36.624 36.678 4 9.7866E-14 9347 20211116_3433_TMUAki_TMT10x_P_F5 148.7 124.87 2598900 3566900 63833 4782500 5726100 3123200 2605700 1491800 1345800 1499400 3098500 2420300 3332800 318760 4768300 5415800 3247400 2767200 1599300 1486400 1464000 2934800 2 2 2 2 2 2 2 2 2 2 2 1697600 2213300 52713 3004900 4753400 2643900 1851200 953100 842790 958890 2014200 1581000 2068200 232670 3004200 4488000 2677700 1998200 1054500 943080 936260 1906800 1 1 1 1 1 1 1 1 1 1 1 901370 1353600 11120 1777600 972660 479310 754500 538730 502980 540480 1084300 839350 1264600 86092 1764100 927820 569710 768940 544800 543330 527790 1028000 1 1 1 1 1 1 1 1 1 1 1 530760000 394870000 135890000 17584 1306 16155 89318;89319;89320 108036;108037 108036 2 SMQGFPFYDK Unmodified 1218.5379 0.53794521 567 P09012 SNRPA U1 small nuclear ribonucleoprotein A yes yes 0 0 0 0 By MS/MS 8 0 1 1 64.508 64.679 2 0.0038253 20076 20211116_3436_TMUAki_TMT10x_P_F8 74.841 56.932 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17585 567 16156 89321 108038 108038 1 SMQGFPFYDKPMR Oxidation (M) 1618.7272 0.72721932 567 P09012 SNRPA U1 small nuclear ribonucleoprotein A yes yes 0 0 1 1 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 53.705 53.607 3 0.038828 15815 20211116_3440_TMUAki_TMT10x_S_F2 45.33 30.977 4803700 9450000 212380 7355600 7076900 7698100 5991600 6120000 5431800 6363000 7628300 4474300 8810100 628030 7657000 6771200 7785700 6117000 6309300 5628400 6204400 7290800 2 2 2 2 2 2 2 2 2 2 2 1783100 2983600 53930 2651200 3033700 4509900 3001300 2506600 2354100 2324300 2688300 1660700 2782800 215610 2755900 2911300 4434700 3026000 2644200 2435100 2277500 2583000 1 1 1 1 1 1 1 1 1 1 1 3020600 6466400 158450 4704500 4043200 3188200 2990300 3613400 3077700 4038800 4940000 2813700 6027200 412420 4901100 3859900 3351000 3091000 3665100 3193300 3926900 4707800 1 1 1 1 1 1 1 1 1 1 1 687740000 330070000 357670000 17586 567 16157 89322;89323 108039 108039 537 1 SMQNWHQLENLSNFIK Oxidation (M) 2003.9523 0.95234489 2572 Q99439;Q99439-2 CNN2 Calponin-2 yes no 0 0 1 0 By MS/MS 1 0 1 1 67.232 67.026 3 7.3092E-05 22992 20211116_3439_TMUAki_TMT10x_S_F1 82.349 66.757 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17587 2572 16158 89324 108040 108040 2800 1 SMQNWHQLENLSNFIK Unmodified 1987.9574 0.95743026 2572 Q99439;Q99439-2 CNN2 Calponin-2 yes no 0 0 0 0 By MS/MS 2 0 1 1 72.45 72.337 3 0.00042368 23357 20211116_3440_TMUAki_TMT10x_S_F2 70.783 50.677 5048800 7791500 100970 8249800 4787300 4395500 5867000 2884500 2351800 2979400 4926500 4701700 7272000 509020 8326200 4623600 4681600 5785900 3011900 2637800 2905900 4672700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5048800 7791500 100970 8249800 4787300 4395500 5867000 2884500 2351800 2979400 4926500 4701700 7272000 509020 8326200 4623600 4681600 5785900 3011900 2637800 2905900 4672700 1 1 1 1 1 1 1 1 1 1 1 496630000 0 496630000 17588 2572 16158 89325 108041 108041 1 SMSQIYCIENAHGQLVR Oxidation (M) 2020.9459 0.9458793 1909 Q53HC9 TSSC1 Protein TSSC1 yes yes 0 0 1 0 By MS/MS By MS/MS 6 0 2 1 1 42.024 42.127 3 2.3006E-15 10317 20211116_3434_TMUAki_TMT10x_P_F6 142.4 120.86 519720 919180 14631 1018400 966210 1274900 719820 1036800 1027900 820370 838190 484020 858060 62977 1035700 921140 1277700 752560 1059700 1025500 810130 814450 2 2 2 2 2 2 2 2 2 2 2 375600 658450 10688 725130 841930 1148200 610800 764010 760020 578790 592690 349800 614650 47632 741370 802120 1135000 636270 790630 760730 572910 576930 1 1 1 1 1 1 1 1 1 1 1 144120 260730 3942.4 293230 124280 126740 109020 272780 267850 241580 245500 134220 243410 15345 294350 119020 142660 116300 269040 264750 237220 237520 1 1 1 1 1 1 1 1 1 1 1 167500000 96223000 71277000 17589 1909 16159 89326;89327 108042;108043 108042 2505 2 SMSQVDVDSGIENMEVDENDRR 2 Oxidation (M) 2556.0704 0.070423704 405 O95155;O95155-2;O95155-4 UBE4B Ubiquitin conjugation factor E4 B yes no 0 0 2 1 By MS/MS 1 0 1 1 36.28 36.221 3 1.5267E-05 10501 20211116_3439_TMUAki_TMT10x_S_F1 78.333 68.803 64890 115340 1090.5 114990 53401 54667 42368 115800 149120 73017 110740 60427 107630 6235.2 116430 50992 60785 46857 113370 145670 73075 108010 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 64890 115340 1090.5 114990 53401 54667 42368 115800 149120 73017 110740 60427 107630 6235.2 116430 50992 60785 46857 113370 145670 73075 108010 1 1 1 1 1 1 1 1 1 1 1 20756000 0 20756000 17590 405 16160 89328 108044 108044 306;307 1 SMSVYCTPNKPSR Unmodified 1525.7017 0.70173285 697 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 0 1 By MS/MS 2 0 1 1 35.556 35.331 3 2.5884E-06 9623 20211116_3429_TMUAki_TMT10x_P_F2 103.3 83.19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17591 697 16161 89329 108045 108045 1 SMTEAEQQQLIDDHFLFDKPVSPLLLASGMAR Unmodified 3586.78 0.77998976 642 P12277 CKB Creatine kinase B-type yes yes 0 0 0 1 By MS/MS By MS/MS 4.8 3.12 2 2 1 2 3 78.528 78.533 4 2.2473E-20 27624 20211116_3439_TMUAki_TMT10x_S_F1 124.32 113.22 21232000 34635000 577890 36069000 23593000 20639000 27521000 11745000 12822000 14305000 21911000 19773000 32324000 2320000 36465000 22755000 21778000 27256000 12467000 14010000 13866000 20855000 5 5 4 5 5 5 5 5 5 5 5 2762700 4492500 0 4006300 2316800 3420500 2962300 1462100 1442200 1479300 2643900 2572300 4190100 210880 4112700 2236900 3476700 2924000 1585900 1576300 1444000 2513300 1 1 0 1 1 1 1 1 1 1 1 18469000 30143000 577890 32063000 21276000 17219000 24559000 10283000 11379000 12826000 19267000 17201000 28134000 2109100 32352000 20518000 18301000 24332000 10881000 12433000 12422000 18342000 4 4 4 4 4 4 4 4 4 4 4 13424000000 4071900000 9352000000 17592 642 16162 89330;89331;89332;89333;89334 108046;108047;108048;108049;108050 108047 5 SMTEAEQQQLIDDHFLFDKPVSPLLLASGMAR 2 Oxidation (M) 3618.7698 0.769819 642 P12277 CKB Creatine kinase B-type yes yes 0 0 2 1 By MS/MS By MS/MS 6 1.58 1 1 1 1 2 2 77.187 77.193 5 0.0010465 25804 20211116_3433_TMUAki_TMT10x_P_F5 55.043 42.847 4224400 7727100 29945 5866500 5238800 8586200 5543100 6750600 6210900 6873300 7476400 3933400 7203300 380640 6156900 5031900 8538100 5627300 6959900 6334200 6707700 7173100 2 2 1 2 2 2 2 2 2 2 2 2016500 3653300 0 2594300 2425500 5586200 2546200 3372400 3371700 3478200 3583500 1877500 3404900 161200 2766100 2327900 5456600 2602000 3543700 3401500 3392600 3450300 1 1 0 1 1 1 1 1 1 1 1 2207800 4073900 29945 3272200 2813300 3000000 2996800 3378200 2839200 3395100 3892900 2055900 3798300 219430 3390800 2704000 3081500 3025300 3416200 2932700 3315100 3722800 1 1 1 1 1 1 1 1 1 1 1 4824100000 1965400000 2858800000 17593 642 16162 89335;89336;89337;89338 108051 108051 685;686 1 SMTEAEQQQLIDDHFLFDKPVSPLLLASGMAR Oxidation (M) 3602.7749 0.77490438 642 P12277 CKB Creatine kinase B-type yes yes 0 0 1 1 By MS/MS By MS/MS 6.5 1.32 1 2 3 2 4 6 6 77.881 77.882 4 4.4667E-11 25442 20211116_3436_TMUAki_TMT10x_P_F8 99.7 97.25 41971000 69594000 398460 64565000 46069000 58486000 51752000 26327000 21398000 30971000 47769000 39082000 64919000 3877700 66131000 44338000 59234000 51257000 28529000 24033000 30057000 45265000 8 8 6 8 8 8 8 8 8 8 8 25967000 43653000 323600 40594000 24145000 40256000 29709000 16358000 13801000 19583000 28545000 24180000 40721000 2398100 41624000 23309000 40494000 29351000 17935000 15259000 18993000 27080000 5 5 3 5 5 5 5 5 5 5 5 16004000 25941000 74859 23971000 21924000 18231000 22043000 9968500 7597100 11388000 19224000 14902000 24198000 1479500 24507000 21029000 18741000 21906000 10595000 8773500 11064000 18185000 3 3 3 3 3 3 3 3 3 3 3 30645000000 15859000000 14785000000 17594 642 16162 89339;89340;89341;89342;89343;89344;89345;89346;89347;89348;89349;89350 108052;108053;108054;108055;108056;108057;108058;108059 108055 685;686 8 SMTPAQADLEFLENAK Unmodified 1763.84 0.84000047 617 P11171;P11171-2;P11171-4;P11171-5;P11171-3;P11171-6;P11171-7 EPB41 Protein 4.1 yes no 0 0 0 0 By MS/MS 3 0 1 1 76.168 76.051 3 0.00018348 26642 20211116_3430_TMUAki_TMT10x_P_F3 74.786 63.346 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17595 617 16163 89351 108060 108060 1 SMVPVQVQLDVPVVK Oxidation (M) 1652.9171 0.91712858 723 P18754;P18754-2 RCC1 Regulator of chromosome condensation yes no 0 0 1 0 By MS/MS By MS/MS 6.75 0.433 1 3 2 2 66.965 67.438 2;3 3.1983E-09 23023 20211116_3446_TMUAki_TMT10x_S_F7 110.8 94.169 20332000 35679000 229700 32123000 25704000 37058000 24724000 27866000 25494000 27257000 28398000 18931000 33279000 1811200 33095000 24625000 37241000 25153000 28778000 26005000 26646000 27304000 3 3 1 3 3 3 3 3 3 3 3 13046000 22015000 229700 19521000 16951000 28737000 16230000 18211000 16176000 17488000 18113000 12148000 20533000 1271200 20228000 16244000 28470000 16498000 19026000 16527000 17109000 17413000 2 2 1 2 2 2 2 2 2 2 2 7285700 13664000 0 12602000 8753600 8321100 8493900 9654200 9318300 9769800 10285000 6783000 12746000 539970 12867000 8381300 8771000 8654800 9751900 9478000 9536900 9891600 1 1 0 1 1 1 1 1 1 1 1 2147700000 933440000 1214300000 17596 723 16164 89352;89353;89354;89355 108061;108062;108063;108064;108065 108065 833 5 SMVPVQVQLDVPVVK Unmodified 1636.9222 0.92221396 723 P18754;P18754-2 RCC1 Regulator of chromosome condensation yes no 0 0 0 0 By MS/MS By MS/MS 8 0 3 2 1 75.085 75.063 2;3 1.5237E-23 24387 20211116_3436_TMUAki_TMT10x_P_F8 186.17 160.05 8720300 14028000 64303 13824000 9223600 11816000 10444000 6266700 5269800 6788700 9647500 8119800 13089000 773790 14087000 8877500 12037000 10370000 6667200 5742900 6608700 9171100 4 4 3 4 4 4 4 4 4 4 4 6141400 9564100 11183 9687700 6026900 9204200 7218900 4258800 3693200 4646400 6583700 5718200 8924800 501830 9867100 5808500 9295300 7151000 4591200 4014000 4522000 6261600 3 3 2 3 3 3 3 3 3 3 3 2578800 4464100 53120 4135800 3196700 2612000 3225600 2007900 1576700 2142200 3063700 2401500 4164200 271960 4219600 3069000 2741300 3219300 2076000 1728900 2086700 2909500 1 1 1 1 1 1 1 1 1 1 1 1378500000 873490000 504990000 17597 723 16164 89356;89357;89358 108066;108067;108068;108069 108067 4 SMVQFIGR Oxidation (M) 952.48004 0.4800364 3346 Q9Y6C9 MTCH2 Mitochondrial carrier homolog 2 yes yes 0 0 1 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 37.01 37.421 2 0.084655 8928 20211116_3436_TMUAki_TMT10x_P_F8 57.047 40.083 1667900 2804600 0 2491700 2805500 2885800 1887100 1682200 1823700 1655100 2151500 1552800 2615800 138770 2569900 2665900 2888500 1960300 1770200 1869700 1617500 2065400 3 3 0 3 3 3 3 3 3 3 3 1230000 2049900 0 1716100 2387400 2529000 1474200 1197000 1339100 1194100 1517600 1145200 1911500 104150 1786500 2265300 2496300 1538900 1284200 1374600 1166400 1458500 2 2 0 2 2 2 2 2 2 2 2 437820 754700 0 775560 418080 356740 412930 485110 484610 460930 633890 407640 704290 34621 783460 400650 392140 421340 486030 495170 451170 606870 1 1 0 1 1 1 1 1 1 1 1 143830000 125790000 18042000 17598 3346 16165 89359;89360;89361 108070 108070 3295 1 SMYEEEINETR Oxidation (M) 1415.5875 0.58747418 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 1 0 By MS/MS By MS/MS 1.33 0.471 4 2 3 3 35.077 35.082 2;3 3.1363E-11 9501 20211116_3429_TMUAki_TMT10x_P_F2 136.52 120.18 1099400 1591300 7380.4 2671800 2586900 1741300 1173800 1410900 1632900 944770 1818300 1023600 1488800 109350 2635400 2444700 1823900 1278700 1437200 1647600 941910 1748300 5 5 2 5 5 5 5 5 5 5 5 418000 621680 7380.4 957870 2082300 1391500 726690 807900 984610 442480 778800 389250 581350 64842 959930 1962900 1377800 815970 839930 983090 447200 757650 2 2 2 2 2 2 2 2 2 2 2 681420 969570 0 1713900 504640 349800 447070 603000 648240 502290 1039500 634390 907500 44508 1675500 481810 446190 462720 597300 664550 494710 990630 3 3 0 3 3 3 3 3 3 3 3 799270000 501590000 297680000 17599 748 16166 89362;89363;89364;89365;89366;89367 108071;108072;108073;108074;108075;108076 108073 868 6 SMYEEEINETR Unmodified 1399.5926 0.59255956 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 By MS/MS By MS/MS 1.4 0.49 3 2 3 2 39.673 39.66 2 2.4418E-69 11394 20211116_3429_TMUAki_TMT10x_P_F2 316.06 307.83 2641900 3383200 1690.2 7116300 7763500 3640300 2908600 1514600 1501900 1443700 3685800 2459600 3170900 258670 6944100 7319900 3875100 3160700 1645100 1667000 1412900 3488000 4 4 1 4 4 4 4 4 4 4 4 1558700 1968700 1690.2 4138100 7163200 3345900 2349500 917090 917870 854420 2158100 1451300 1845100 205040 4056500 6747200 3402900 2590600 1053100 1040400 837050 2043400 2 2 1 2 2 2 2 2 2 2 2 1083200 1414500 0 2978200 600310 294340 559120 597500 584020 589260 1527700 1008300 1325700 53627 2887600 572660 472210 570060 591950 626540 575850 1444500 2 2 0 2 2 2 2 2 2 2 2 433730000 310130000 123610000 17600 748 16166 89368;89369;89370;89371;89372 108077;108078;108079;108080;108081 108079 5 SMYEEEINETRR Oxidation (M) 1571.6886 0.68858521 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 1 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 31.839 31.774 3 2.7724E-12 8182 20211116_3429_TMUAki_TMT10x_P_F2 172.13 153.4 1046800 1422100 2025.5 2045400 3881200 2387900 1448900 1417900 2058600 1052900 1744700 974660 1329300 122220 2047700 3660000 2389700 1615700 1479700 2056500 1043300 1692800 3 3 1 3 3 3 3 3 3 3 3 794410 1062100 2025.5 1547700 3671100 2208700 1222400 1062900 1552000 789970 1328100 739670 992870 105070 1554500 3458400 2183600 1378100 1130300 1556500 782770 1288100 2 2 1 2 2 2 2 2 2 2 2 252410 360010 0 497670 210070 179240 226540 355040 506690 262920 416620 234990 336440 17152 493220 201630 206190 237600 349350 500010 260570 404680 1 1 0 1 1 1 1 1 1 1 1 418730000 327650000 91072000 17601 748 16167 89373;89374;89375 108082;108083;108084 108083 868 3 SMYEEEINETRR Unmodified 1555.6937 0.69367058 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 34.391 34.273 3 7.6271E-16 7713 20211116_3428_TMUAki_TMT10x_P_F1 196.5 171.28 1318100 1860500 29014 2873000 3977100 2441100 1773300 1190300 1106300 1057600 1961200 1227500 1739900 173560 2853000 3759800 2485400 1893300 1269400 1184900 1038300 1865400 3 3 3 3 3 3 3 3 3 3 3 1074900 1484900 23325 2308900 3737800 2265300 1575600 924660 878490 818210 1566100 1001000 1388700 148150 2296600 3531000 2280300 1689700 1004600 948620 803490 1489400 2 2 2 2 2 2 2 2 2 2 2 243240 375600 5688.8 564080 239300 175800 197660 265660 227760 239340 395080 226520 351180 25413 556340 228750 205060 203610 264780 236330 234840 375940 1 1 1 1 1 1 1 1 1 1 1 178660000 141220000 37440000 17602 748 16167 89376;89377;89378;89379 108085;108086;108087 108085 3 SNAAAYLQHLCYR Unmodified 1565.7409 0.74089555 284 O60716;O60716-3;O60716-2;O60716-6;O60716-5;O60716-7;O60716-9;O60716-8;O60716-10;O60716-12;O60716-14;O60716-11;O60716-13;O60716-16;O60716-15;O60716-4;O60716-23;O60716-22;O60716-24;O60716-17;O60716-20;O60716-18;O60716-19;O60716-21;O60716-27;O60716-29;O60716-25;O60716-28;O60716-31;O60716-32;O60716-30;O60716-26 CTNND1 Catenin delta-1 yes no 0 0 0 0 By MS/MS 2 0 1 1 48.417 48.137 3 0.00065142 14844 20211116_3429_TMUAki_TMT10x_P_F2 70.373 48.175 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17603 284 16168 89380 108088 108088 1 SNAHYNLQNAFNLAEQHLGLTK Unmodified 2482.2353 0.23531968 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 68.304 68.134 4 7.0286E-37 21731 20211116_3440_TMUAki_TMT10x_S_F2 199.04 177.8 6503700 10999000 79927 10873000 7444300 11890000 7265300 7578700 7172200 8464400 7135700 6056100 10263000 626860 11117000 7138300 11954000 7376000 7949600 7299200 8230300 6884700 3 3 3 3 3 3 3 3 3 3 3 4602700 7233100 77553 7631700 4721200 9473100 5163900 5315900 4843600 6093500 4729600 4286100 6750700 455530 7784900 4542800 9443500 5204900 5637900 4937500 5919200 4566000 2 2 2 2 2 2 2 2 2 2 2 1901000 3766400 2374 3241600 2723100 2417400 2101400 2262800 2328600 2370900 2406000 1770000 3512500 171330 3331700 2595600 2510000 2171100 2311700 2361700 2311100 2318600 1 1 1 1 1 1 1 1 1 1 1 3079900000 1899800000 1180100000 17604 1475 16169 89381;89382;89383 108089;108090;108091 108091 3 SNASLTNNQNLIQSLKEDLNK Unmodified 2343.203 0.2030165 641 P12270 TPR Nucleoprotein TPR yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 74.672 74.616 3;4 8.6517E-45 24171 20211116_3436_TMUAki_TMT10x_P_F8 214.55 179.17 10422000 18568000 78056 14168000 13927000 21241000 15179000 14932000 14453000 15242000 15104000 9704200 17309000 949460 14870000 13388000 21061000 15308000 15509000 14759000 14873000 14550000 3 3 2 3 3 3 3 3 3 3 3 7856300 13844000 31661 10208000 9725200 17990000 11826000 10878000 10752000 11031000 11332000 7315000 12905000 670590 10787000 9377300 17687000 11853000 11423000 11006000 10767000 10913000 2 2 1 2 2 2 2 2 2 2 2 2565700 4723600 46395 3959800 4202100 3251800 3352200 4054200 3701400 4210500 3772600 2389200 4404800 278870 4083000 4010600 3374400 3455500 4086200 3752800 4105700 3637100 1 1 1 1 1 1 1 1 1 1 1 2119500000 1344600000 774960000 17605 641 16170 89384;89385 108092;108093;108094 108092 3 SNCKPSTFAYPAPLEVPK Unmodified 2004.9979 0.9978981 2575 Q99460 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes yes 0 0 0 1 By MS/MS By MS/MS 3.62 3.16 4 1 1 2 5 3 56.984 56.992 3;4 3.5123E-08 18976 20211116_3439_TMUAki_TMT10x_S_F1 112.74 98.264 27793000 49729000 409440 45750000 42413000 56945000 35590000 36460000 37096000 35669000 38982000 25880000 46388000 2630000 47121000 40516000 56861000 36504000 38080000 37740000 34868000 37546000 8 8 6 8 8 8 8 8 8 8 8 19922000 35389000 341590 32900000 33541000 48802000 29209000 26032000 26265000 24988000 28336000 18552000 33012000 2084300 33977000 32068000 48224000 29763000 27585000 26922000 24447000 27270000 5 5 4 5 5 5 5 5 5 5 5 7870100 14340000 67848 12850000 8871300 8142800 6381000 10428000 10831000 10681000 10646000 7328300 13375000 545660 13144000 8447700 8637000 6740500 10494000 10818000 10421000 10276000 3 3 2 3 3 3 3 3 3 3 3 5557400000 3964100000 1593300000 17606 2575 16171 89386;89387;89388;89389;89390;89391;89392;89393 108095;108096;108097;108098;108099;108100;108101;108102;108103 108101 9 SNDEEAFTFAR Unmodified 1285.5575 0.55749468 598 P35520;P0DN79;P35520-2 CBS Cystathionine beta-synthase yes no 0 0 0 0 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 3 4 46.325 46.222 2 4.1779E-59 12687 20211116_3440_TMUAki_TMT10x_S_F2 316.09 293.05 21560000 32690000 54209 45219000 35354000 34929000 21999000 31804000 35440000 28145000 33139000 20073000 30550000 1724500 45092000 33547000 36148000 23429000 32384000 35385000 27638000 32039000 10 10 2 10 10 10 10 10 10 10 10 10255000 14612000 8235.7 19904000 27470000 27232000 15160000 14132000 16258000 12627000 14893000 9546300 13654000 877410 20041000 26016000 26996000 16055000 14985000 16443000 12394000 14409000 4 4 1 4 4 4 4 4 4 4 4 11306000 18078000 45973 25315000 7883900 7697300 6839500 17671000 19183000 15518000 18246000 10526000 16896000 847110 25051000 7530500 9152400 7374300 17399000 18942000 15245000 17631000 6 6 1 6 6 6 6 6 6 6 6 2154400000 1382500000 771930000 17607 598 16172 89394;89395;89396;89397;89398;89399;89400 108104;108105;108106;108107;108108;108109;108110;108111;108112;108113 108110 10 SNDPQMVAENFVPPLLDAVLIDYQR Oxidation (M) 2859.4113 0.41129472 153 O14980 XPO1 Exportin-1 yes yes 0 0 1 0 By MS/MS By MS/MS 3.89 1.45 2 2 2 1 2 4 5 82.748 82.741 3 5.1928E-17 28164 20211116_3442_TMUAki_TMT10x_S_F4 128.33 115.01 4746100 8280600 93323 7472600 5293300 7952800 6064500 5723800 6246700 6391500 7134100 4419700 7723600 394650 7687600 5099200 8022100 6116800 5952000 6378500 6214700 6854600 16 16 12 16 16 16 16 16 16 16 16 2436000 4351900 46707 3935100 2244100 5043500 2919500 2926100 3350100 3365200 3617400 2268500 4059200 169570 4060500 2171500 5022000 2939400 3095000 3398800 3268500 3481300 7 7 5 7 7 7 7 7 7 7 7 2310100 3928700 46616 3537500 3049300 2909400 3145000 2797700 2896700 3026300 3516700 2151200 3664400 225080 3627100 2927700 3000100 3177400 2857000 2979700 2946200 3373300 9 9 7 9 9 9 9 9 9 9 9 1900100000 896840000 1003300000 17608 153 16173 89401;89402;89403;89404;89405;89406;89407;89408;89409 108114;108115;108116;108117;108118;108119;108120;108121;108122;108123;108124;108125;108126;108127;108128;108129 108124 118 16 SNDSEEGLEDAVEGADEALQK Unmodified 2204.9557 0.95569475 2953 Q9NUJ3 TCP11L1 T-complex protein 11-like protein 1 yes yes 0 0 0 0 By MS/MS 1 0 1 1 73.874 73.874 3 0.0053745 23766 20211116_3428_TMUAki_TMT10x_P_F1 50.055 40.891 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17609 2953 16174 89410 108130 108130 1 SNEDVNSSELDEEYLIELEK Unmodified 2354.0649 0.064910845 2589 Q99614 TTC1 Tetratricopeptide repeat protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 76.067 76.035 3 2.1414E-13 26629 20211116_3439_TMUAki_TMT10x_S_F1 136.58 119.09 21274000 34011000 1071100 35385000 22943000 29231000 24653000 22265000 20432000 21716000 27296000 19816000 31741000 2785400 35909000 22107000 30002000 24787000 22973000 21214000 21231000 26119000 3 3 3 3 3 3 3 3 3 3 3 8900900 13634000 504540 14713000 8370400 15328000 9645900 10396000 9400100 9176800 10522000 8291400 12726000 1200700 14943000 8088500 15466000 9709900 10783000 9613500 9012800 10116000 1 1 1 1 1 1 1 1 1 1 1 12373000 20376000 566600 20672000 14573000 13903000 15007000 11869000 11032000 12539000 16774000 11525000 19014000 1584700 20966000 14018000 14535000 15077000 12190000 11601000 12219000 16004000 2 2 2 2 2 2 2 2 2 2 2 2044600000 1091300000 953330000 17610 2589 16175 89411;89412 108131;108132;108133 108133 3 SNEILTAIIQGMR Oxidation (M) 1460.7657 0.76571331 1739 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 1 0 By MS/MS By MS/MS 5.18 3.19 4 3 4 6 5 69.523 69.525 2;3 5.2597E-05 21986 20211116_3436_TMUAki_TMT10x_P_F8 96.464 79.522 33790000 55982000 450000 52097000 36970000 52795000 38957000 33354000 34613000 36329000 42274000 31465000 52222000 3168600 53432000 35520000 53304000 39277000 34982000 35675000 35358000 40543000 11 11 9 11 11 11 11 11 11 11 11 20413000 32862000 141390 30482000 21978000 37850000 22763000 20209000 21033000 21869000 26131000 19006000 30655000 1749300 31375000 21096000 37708000 22995000 21488000 21654000 21290000 25049000 6 6 4 6 6 6 6 6 6 6 6 13378000 23120000 308610 21615000 14992000 14945000 16194000 13144000 13580000 14460000 16144000 12458000 21568000 1419300 22058000 14424000 15596000 16283000 13494000 14021000 14068000 15494000 5 5 5 5 5 5 5 5 5 5 5 7777500000 4241800000 3535700000 17611 1739 16176 89413;89414;89415;89416;89417;89418;89419;89420;89421;89422;89423 108134;108135;108136;108137;108138;108139;108140;108141;108142;108143;108144;108145;108146 108139 2344 13 SNEILTAIIQGMR Unmodified 1444.7708 0.77079869 1739 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 4 4 4 4 79.229 79.184 2;3 6.3997E-36 28889 20211116_3441_TMUAki_TMT10x_S_F3 267.07 231.11 51274000 76258000 14164 79587000 51443000 48545000 58406000 24896000 21756000 27819000 49050000 47737000 71169000 3405900 80493000 49463000 50838000 57746000 26594000 24706000 27049000 46472000 6 6 1 6 6 6 6 6 6 6 6 25828000 37691000 14164 40144000 22516000 29599000 27907000 12030000 10545000 14059000 24844000 24046000 35179000 1806900 40623000 21706000 30410000 27488000 13178000 11994000 13647000 23523000 3 3 1 3 3 3 3 3 3 3 3 25446000 38567000 0 39443000 28927000 18946000 30500000 12867000 11212000 13760000 24207000 23691000 35990000 1599000 39870000 27757000 20429000 30258000 13416000 12711000 13401000 22949000 3 3 0 3 3 3 3 3 3 3 3 8352300000 4243800000 4108500000 17612 1739 16176 89424;89425;89426;89427;89428;89429;89430;89431 108147;108148;108149;108150;108151;108152 108151 6 SNELGDVGVHCVLQGLQTPSCK Unmodified 2397.1417 0.14167857 651 P13489 RNH1 Ribonuclease inhibitor yes yes 0 0 0 0 By MS/MS By matching 7 0 2 1 1 61.978 62.563 3 4.9905E-11 20405 20211116_3435_TMUAki_TMT10x_P_F7 117.54 104.51 1854200 3176500 0 3143300 2087900 3396000 2259100 1959400 1807900 1843700 2194900 1726400 2963900 153550 3212800 2006000 3411700 2268600 2061200 1872700 1805400 2105400 1 1 0 1 1 1 1 1 1 1 1 1854200 3176500 0 3143300 2087900 3396000 2259100 1959400 1807900 1843700 2194900 1726400 2963900 153550 3212800 2006000 3411700 2268600 2061200 1872700 1805400 2105400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1749500000 761120000 988420000 17613 651 16177 89432;89433 108153 108153 1 SNFAEALAAHK Unmodified 1157.5829 0.58292157 533 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 By MS/MS By MS/MS 6.8 0.748 2 2 1 3 2 45.403 45.722 3 0.00065443 13608 20211116_3435_TMUAki_TMT10x_P_F7 80.469 53.871 23583000 36208000 272800 43735000 38300000 31784000 24996000 30347000 32529000 26383000 34210000 21958000 33814000 2200900 43907000 36392000 33085000 26283000 30809000 32823000 25930000 32949000 5 5 3 5 5 5 5 5 5 5 5 8497700 12416000 19463 14135000 24026000 19508000 11008000 11214000 11939000 9421100 11420000 7910900 11592000 755420 14379000 22699000 19356000 11876000 11766000 12087000 9275000 11033000 2 2 1 2 2 2 2 2 2 2 2 15085000 23792000 253330 29600000 14274000 12276000 13987000 19134000 20590000 16962000 22789000 14048000 22222000 1445400 29528000 13693000 13729000 14407000 19043000 20736000 16655000 21916000 3 3 2 3 3 3 3 3 3 3 3 2298400000 1316600000 981870000 17614 533 16178 89434;89435;89436;89437;89438 108154;108155;108156;108157;108158;108159 108155 6 SNFLVLCYLHDVK Unmodified 1606.8177 0.81774888 1070 P48147 PREP Prolyl endopeptidase yes yes 0 0 0 0 By MS/MS 1 0 1 1 72.555 72.555 3 0.0040304 23227 20211116_3428_TMUAki_TMT10x_P_F1 65.467 36.139 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17615 1070 16179 89439 108160 108160 1 SNFSNSADDIK Unmodified 1196.5309 0.53094558 1035 P45973 CBX5 Chromobox protein homolog 5 yes yes 0 0 0 0 By MS/MS 4 0 1 1 37.595 37.753 2 7.5602E-30 9766 20211116_3442_TMUAki_TMT10x_S_F4 267.39 206.91 215990 386270 0 328950 284380 212790 287840 186570 283620 182220 327410 201080 360210 14704 337890 272490 223350 291660 190890 290270 178140 314490 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 215990 386270 0 328950 284380 212790 287840 186570 283620 182220 327410 201080 360210 14704 337890 272490 223350 291660 190890 290270 178140 314490 1 1 0 1 1 1 1 1 1 1 1 15181000 0 15181000 17616 1035 16180 89440 108161 108161 1 SNGYEDHMAEDCRGDIGR Acetyl (Protein N-term);Oxidation (M) 2138.8382 0.83817934 1825 Q15717 ELAVL1 ELAV-like protein 1 yes yes 1 0 1 1 By MS/MS 1 0 1 1 28.415 28.415 3 7.5524E-06 5343 20211116_3428_TMUAki_TMT10x_P_F1 56.215 54.144 12039 25919 0 25228 19225 29644 17572 16160 19166 18656 23426 11209 24182 0 25851 18392 29624 17960 17186 19579 18117 22467 2 2 0 2 2 2 2 2 2 2 2 12039 25919 0 25228 19225 29644 17572 16160 19166 18656 23426 11209 24182 0 25851 18392 29624 17960 17186 19579 18117 22467 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7144000 7144000 0 17617 1825 16181 89441 108162;108163 108163 2443 2 SNGYEEAYSVFKK Unmodified 1520.7147 0.7147236 1025 P43034 PAFAH1B1 Platelet-activating factor acetylhydrolase IB subunit alpha yes yes 0 0 0 1 By MS/MS 7.5 0.5 1 1 2 53.525 54.038 3 4.8372E-09 17422 20211116_3446_TMUAki_TMT10x_S_F7 125.5 103.27 13596000 24864000 154340 25966000 10816000 11505000 10182000 19598000 21997000 18736000 20830000 12660000 23205000 1232100 26196000 10364000 12795000 10727000 19492000 21820000 18334000 20130000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13596000 24864000 154340 25966000 10816000 11505000 10182000 19598000 21997000 18736000 20830000 12660000 23205000 1232100 26196000 10364000 12795000 10727000 19492000 21820000 18334000 20130000 2 2 2 2 2 2 2 2 2 2 2 685090000 0 685090000 17618 1025 16182 89442;89443 108164;108165;108166 108164 3 SNIDALLSR Unmodified 987.53491 0.53490874 3158 Q9UKM9;Q9UKM9-2 RALY RNA-binding protein Raly yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 51.352 51.377 2 0.012258 14965 20211116_3431_TMUAki_TMT10x_P_F4 66.056 34.185 3848000 5660200 0 7419600 8405800 7994000 5147700 4405700 5012600 4405500 5302400 3582700 5288200 358640 7453500 7976400 8027600 5387700 4660500 5115700 4302600 5106000 1 1 0 1 1 1 1 1 1 1 1 3848000 5660200 0 7419600 8405800 7994000 5147700 4405700 5012600 4405500 5302400 3582700 5288200 358640 7453500 7976400 8027600 5387700 4660500 5115700 4302600 5106000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 212670000 212670000 0 17619 3158 16183 89444;89445;89446 108167;108168 108167 2 SNINGPGTPRPLNRPK Unmodified 1716.9383 0.9383498 3012 Q9NY27;Q9NY27-2;Q9NY27-3 PPP4R2 Serine/threonine-protein phosphatase 4 regulatory subunit 2 yes no 0 0 0 2 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 30.72 30.61 4 4.2348E-05 9294 20211116_3441_TMUAki_TMT10x_S_F3 92.38 60.499 503140 836540 42767 865490 1031400 983730 645850 566720 674330 568290 771960 468790 780690 88970 882670 981860 985490 676150 597290 688230 554950 741660 2 2 2 2 2 2 2 2 2 2 2 370810 603590 36203 659550 890930 848890 488030 416860 499460 411470 576330 345530 563420 71768 671730 846330 843400 516450 445470 510340 402080 553580 1 1 1 1 1 1 1 1 1 1 1 132330 232950 6563.9 205940 140480 134840 157810 149860 174870 156820 195630 123260 217260 17203 210930 135530 142090 159700 151820 177890 152870 188080 1 1 1 1 1 1 1 1 1 1 1 60510000 51333000 9177100 17620 3012 16184 89447;89448 108169;108170 108170 2 SNIVTSINFSK Unmodified 1208.6401 0.6401021 2839 Q9H9A6 LRRC40 Leucine-rich repeat-containing protein 40 yes yes 0 0 0 0 By MS/MS 2 0 1 1 58.368 58.141 3 0.00028622 17642 20211116_3440_TMUAki_TMT10x_S_F2 84.892 61.864 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17621 2839 16185 89449 108171 108171 1 SNLAYDIVQLPTGLTGIK Unmodified 1902.0462 0.046228496 916 P34932;P34932-2 HSPA4 Heat shock 70 kDa protein 4 yes no 0 0 0 0 By MS/MS By MS/MS 2.82 1.91 9 25 15 1 3 4 29 28 52.667 52.601 2;3 5.8292E-50 26090 20211116_3440_TMUAki_TMT10x_S_F2 223.58 197.06 101820000 174350000 274730 149130000 118010000 150120000 135800000 103850000 109960000 110850000 130220000 94796000 162590000 5017900 153930000 113530000 151830000 136020000 108130000 113720000 107970000 124990000 48 48 23 48 48 48 48 48 47 48 48 45342000 63767000 67060 57226000 34636000 71996000 50268000 43122000 46416000 43308000 51133000 42212000 59477000 1582800 59063000 33561000 71784000 50052000 45306000 47556000 42289000 49180000 22 22 8 22 22 22 22 22 21 22 22 56480000 110580000 207670 91901000 83378000 78124000 85529000 60726000 63545000 67541000 79086000 52584000 103110000 3435100 94867000 79965000 80046000 85963000 62824000 66160000 65683000 75811000 26 26 15 26 26 26 26 26 26 26 26 30813000000 16106000000 14707000000 17622 916 16186 89450;89451;89452;89453;89454;89455;89456;89457;89458;89459;89460;89461;89462;89463;89464;89465;89466;89467;89468;89469;89470;89471;89472;89473;89474;89475;89476;89477;89478;89479;89480;89481;89482;89483;89484;89485;89486;89487;89488;89489;89490;89491;89492;89493;89494;89495;89496;89497;89498;89499;89500;89501;89502;89503;89504;89505;89506 108172;108173;108174;108175;108176;108177;108178;108179;108180;108181;108182;108183;108184;108185;108186;108187;108188;108189;108190;108191;108192;108193;108194;108195;108196;108197;108198;108199;108200;108201;108202;108203;108204;108205;108206;108207;108208;108209;108210;108211;108212;108213;108214;108215;108216;108217;108218;108219;108220;108221;108222;108223;108224;108225;108226;108227;108228;108229;108230;108231;108232;108233 108213 62 SNLELFKEELK Unmodified 1348.7238 0.72383172 156 O15042;O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 0 0 0 1 By MS/MS By MS/MS 5.8 0.748 2 2 1 3 2 61.14 61.212 3 7.5207E-06 18445 20211116_3445_TMUAki_TMT10x_S_F6 114.74 63.864 43790000 71507000 472280 77670000 63549000 77821000 50179000 53445000 54521000 52420000 59103000 40775000 66747000 4268300 78803000 60621000 78722000 51732000 55539000 55439000 51239000 56872000 6 6 4 6 6 6 6 6 6 6 6 27195000 44280000 252220 49016000 47988000 64269000 37686000 33241000 33468000 33351000 36596000 25323000 41336000 2701900 49898000 45764000 63835000 38634000 35367000 34344000 32568000 35206000 4 4 2 4 4 4 4 4 4 4 4 16594000 27227000 220060 28654000 15561000 13552000 12494000 20203000 21053000 19069000 22506000 15453000 25411000 1566400 28905000 14856000 14887000 13098000 20172000 21095000 18670000 21666000 2 2 2 2 2 2 2 2 2 2 2 2248000000 981160000 1266800000 17623 156 16187 89507;89508;89509;89510;89511 108234;108235;108236;108237;108238;108239;108240 108240 7 SNLGSVVLQLK Unmodified 1156.6816 0.68157298 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 0 0 By MS/MS By MS/MS 1.57 0.495 3 4 3 4 66.53 66.315 2;3 1.0175E-15 22254 20211116_3429_TMUAki_TMT10x_P_F2 204.56 138.76 29199000 47550000 232830 47328000 36225000 49566000 33949000 37270000 37564000 37060000 38172000 27189000 44368000 2672900 48331000 34687000 50080000 34667000 38507000 38078000 36204000 36805000 6 6 4 6 6 6 6 6 6 6 6 17111000 26576000 107930 26525000 23371000 37117000 21198000 21391000 22075000 21195000 21369000 15932000 24798000 1543600 27222000 22357000 36805000 21643000 22536000 22394000 20708000 20635000 3 3 1 3 3 3 3 3 3 3 3 12088000 20974000 124900 20802000 12853000 12450000 12751000 15879000 15489000 15866000 16804000 11256000 19570000 1129300 21109000 12329000 13275000 13024000 15971000 15684000 15496000 16169000 3 3 3 3 3 3 3 3 3 3 3 3365700000 2173100000 1192500000 17624 196 16188 89512;89513;89514;89515;89516;89517;89518 108241;108242;108243;108244;108245;108246;108247;108248 108243 8 SNLMDAISFVLGEK Unmodified 1522.7701 0.77012999 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 0 By MS/MS By MS/MS 5.57 2.72 1 1 2 3 3 4 82.254 82.253 2;3 3.0023E-10 26725 20211116_3447_TMUAki_TMT10x_S_F8 124.51 93.965 4151200 6662900 39286 7200900 4608500 4511400 5420800 2840700 2426300 3205600 6034700 3865400 6219200 379240 7267900 4441100 4724300 5363300 2983500 2727400 3115700 5709800 3 3 1 3 3 3 3 3 3 3 3 1070500 1640800 0 2010400 1094200 1926700 1270700 1166900 937690 1170500 1864300 996740 1532400 86337 2023600 1053400 1950900 1269400 1224900 1001400 1143100 1769700 1 1 0 1 1 1 1 1 1 1 1 3080700 5022100 39286 5190500 3514300 2584700 4150100 1673800 1488600 2035100 4170500 2868700 4686800 292910 5244300 3387700 2773300 4094000 1758600 1726000 1972700 3940100 2 2 1 2 2 2 2 2 2 2 2 464010000 130650000 333360000 17625 1723 16189 89519;89520;89521;89522;89523;89524;89525 108249;108250;108251;108252;108253 108253 5 SNLMDAISFVLGEK Oxidation (M) 1538.765 0.76504461 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 1 0 By MS/MS By MS/MS 7.43 0.728 1 2 4 4 3 80.217 80.223 2;3 8.791E-09 26478 20211116_3436_TMUAki_TMT10x_P_F8 127.78 106.88 20300000 34242000 398810 27950000 22202000 38247000 24778000 27800000 30489000 30420000 27922000 18904000 31928000 2038500 29112000 21375000 38094000 25176000 28870000 30676000 29601000 27015000 6 6 4 6 6 6 6 6 6 6 6 12230000 19988000 255820 16600000 11104000 26559000 13449000 16836000 18086000 18078000 16736000 11389000 18639000 1194700 17323000 10719000 26224000 13663000 17646000 18149000 17605000 16186000 3 3 2 3 3 3 3 3 3 3 3 8070200 14253000 142990 11350000 11098000 11688000 11329000 10963000 12402000 12341000 11186000 7515200 13289000 843820 11789000 10656000 11870000 11513000 11225000 12527000 11996000 10829000 3 3 2 3 3 3 3 3 3 3 3 3790500000 2282700000 1507900000 17626 1723 16189 89526;89527;89528;89529;89530;89531;89532 108254;108255;108256;108257;108258;108259 108256 2316 6 SNLNSLDEQEGVK Unmodified 1431.6842 0.68415175 317 O75223 GGCT Gamma-glutamylcyclotransferase yes yes 0 0 0 0 By MS/MS 3 0 1 1 41.402 41.457 3 0.097917 12513 20211116_3430_TMUAki_TMT10x_P_F3 27.458 11.568 749580 1186900 4739.2 1365900 1978300 1621100 967800 845820 967140 720830 1040100 697900 1108200 75971 1384700 1871300 1618400 1034500 895360 986520 709150 1001100 2 2 1 2 2 2 2 2 2 2 2 749580 1186900 4739.2 1365900 1978300 1621100 967800 845820 967140 720830 1040100 697900 1108200 75971 1384700 1871300 1618400 1034500 895360 986520 709150 1001100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16017000 16017000 0 17627 317 16190 89533 108260;108261 108261 2 SNLVDNTNQVEVLQR Unmodified 1727.8802 0.8802258 2959 Q9NUU7;Q9UMR2;Q9UMR2-2;Q9UMR2-4 DDX19A;DDX19B ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 48.122 48.188 3 1.1991E-19 14103 20211116_3442_TMUAki_TMT10x_S_F4 171.08 134.23 2321600 4092800 22325 4461500 3146400 3973300 2274800 3304600 3323300 3026400 3659900 2161800 3820400 224840 4518100 2996400 4062900 2385500 3385300 3347000 2967200 3520100 2 2 2 2 2 2 2 2 2 2 2 1006800 1953700 8388.7 1840700 1903600 2901600 1423100 1307900 1530400 1406000 1623800 937450 1822600 103850 1901700 1813700 2854700 1471900 1413100 1555600 1369100 1563500 1 1 1 1 1 1 1 1 1 1 1 1314900 2139100 13936 2620800 1242800 1071700 851720 1996700 1792900 1620400 2036100 1224400 1997800 120990 2616400 1182700 1208100 913520 1972200 1791400 1598100 1956600 1 1 1 1 1 1 1 1 1 1 1 514710000 162100000 352620000 17628 2959 16191 89534;89535;89536 108262;108263;108264 108264 3 SNLVDNTNQVEVLQRDPNSPLYSVK Unmodified 2828.4305 0.43045026 2959 Q9NUU7;Q9UMR2;Q9UMR2-2;Q9UMR2-4 DDX19A;DDX19B ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B yes no 0 0 0 1 By MS/MS 6 0 1 1 62.14 62.168 3 2.5844E-29 18504 20211116_3434_TMUAki_TMT10x_P_F6 162.01 149.57 2324700 3540300 0 3509200 2609100 4513100 2717400 2545900 2398700 2202400 2661500 2164400 3303400 177020 3597200 2503100 4491600 2740800 2677500 2463500 2165200 2559300 1 1 0 1 1 1 1 1 1 1 1 2324700 3540300 0 3509200 2609100 4513100 2717400 2545900 2398700 2202400 2661500 2164400 3303400 177020 3597200 2503100 4491600 2740800 2677500 2463500 2165200 2559300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 682850000 682850000 0 17629 2959 16192 89537 108265 108265 1 SNLYIAESTSGR Unmodified 1296.631 0.63099397 2989 Q9NWU5;Q9NWU5-2;Q9NWU5-3 MRPL22 39S ribosomal protein L22, mitochondrial yes no 0 0 0 0 By MS/MS 4 0 1 1 37.709 37.867 2 4.3737E-09 9899 20211116_3442_TMUAki_TMT10x_S_F4 154.88 133.58 252440 366600 0 466490 212090 163780 192990 193150 194610 168420 298010 235020 342450 16355 464310 202620 186180 196800 194160 201580 165510 284280 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 252440 366600 0 466490 212090 163780 192990 193150 194610 168420 298010 235020 342450 16355 464310 202620 186180 196800 194160 201580 165510 284280 1 1 0 1 1 1 1 1 1 1 1 29136000 0 29136000 17630 2989 16193 89538 108266 108266 1 SNMGHPEPASGLAALAK Oxidation (M) 1665.8145 0.81445442 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 1 0 By MS/MS By MS/MS 6.5 1.12 2 2 2 2 5 3 41.588 41.666 3 2.0371E-10 10281 20211116_3445_TMUAki_TMT10x_S_F6 119.68 106.7 2631900 4009000 5371.5 5697900 5848100 6870300 3046500 3686600 4347000 3420400 3597600 2450400 3747100 243360 5711100 5535700 6855200 3276900 3901000 4338800 3351500 3493600 3 3 1 3 3 3 3 3 3 3 3 2198600 3280900 5371.5 4816800 5521300 6554400 2743100 2871100 3408000 2804900 2852700 2047000 3067200 213110 4831500 5223200 6487200 2948300 3103100 3418300 2742100 2769100 2 2 1 2 2 2 2 2 2 2 2 433250 728070 0 881100 326760 315910 303430 815440 938980 615540 744850 403360 679940 30243 879610 312450 367920 328680 797890 920550 609400 724540 1 1 0 1 1 1 1 1 1 1 1 984270000 839890000 144370000 17631 1092 16194 89539;89540;89541;89542;89543;89544;89545;89546 108267;108268;108269;108270;108271;108272;108273;108274 108272 1434 8 SNMGHPEPASGLAALAK Unmodified 1649.8195 0.8195398 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS 6 0 1 1 46.098 46.262 3 7.0126E-05 12276 20211116_3445_TMUAki_TMT10x_S_F6 80.738 67.943 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17632 1092 16194 89547 108275 108275 1 SNNVEMDWVLK Oxidation (M) 1349.6286 0.62855113 894 P31943 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes yes 0 0 1 0 By MS/MS By MS/MS 4.25 0.661 1 4 3 4 4 56.819 56.876 2;3 0.00025548 17645 20211116_3442_TMUAki_TMT10x_S_F4 98.257 73.482 49491000 78501000 176010 90597000 79854000 76536000 62756000 39216000 40028000 43366000 63168000 46080000 73295000 4463500 91359000 76134000 77999000 63847000 41880000 42537000 42182000 60219000 10 10 6 10 10 10 10 10 10 10 10 29541000 45338000 170640 53541000 61747000 63184000 46059000 23767000 24810000 25770000 36908000 27505000 42336000 2913900 54185000 58812000 62887000 46883000 26214000 26600000 25086000 35230000 6 6 4 6 6 6 6 6 6 6 6 19950000 33163000 5361.7 37056000 18107000 13352000 16697000 15449000 15217000 17596000 26259000 18575000 30959000 1549600 37174000 17322000 15111000 16964000 15666000 15938000 17096000 24990000 4 4 2 4 4 4 4 4 4 4 4 5171100000 2642000000 2529000000 17633 894 16195 89548;89549;89550;89551;89552;89553;89554;89555 108276;108277;108278;108279;108280;108281;108282;108283;108284;108285 108282 1094 10 SNNVEMDWVLK Unmodified 1333.6336 0.63363651 894 P31943 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 4.79 1.08 2 4 3 5 9 5 66.6 66.615 2;3 8.3079E-19 21699 20211116_3442_TMUAki_TMT10x_S_F4 229.16 166.61 75859000 115220000 491030 132130000 91997000 78062000 98549000 32871000 25960000 37337000 77014000 70631000 107570000 6273800 132790000 88360000 81844000 97373000 35835000 31398000 36281000 72712000 11 11 3 11 11 11 11 11 11 11 11 46061000 69554000 491030 78665000 59716000 60623000 68104000 22337000 18783000 24697000 46875000 42888000 64935000 4170300 79337000 57480000 62011000 67116000 24714000 22264000 24023000 44349000 7 7 3 7 7 7 7 7 7 7 7 29798000 45663000 0 53466000 32281000 17439000 30445000 10534000 7176700 12640000 30139000 27742000 42638000 2103500 53454000 30880000 19833000 30257000 11121000 9134000 12258000 28363000 4 4 0 4 4 4 4 4 4 4 4 5567600000 2880500000 2687100000 17634 894 16195 89556;89557;89558;89559;89560;89561;89562;89563;89564;89565;89566;89567;89568;89569 108286;108287;108288;108289;108290;108291;108292;108293;108294;108295;108296;108297;108298;108299;108300;108301;108302;108303 108299 18 SNPEDQILYQTER Unmodified 1591.7478 0.74781464 1687 Q14165 MLEC Malectin yes yes 0 0 0 0 By MS/MS By MS/MS 2.09 0.793 3 4 4 5 6 46.478 46.317 2;3 5.2571E-78 14116 20211116_3429_TMUAki_TMT10x_P_F2 336.16 305.77 14105000 24036000 112450 29017000 21534000 22407000 15300000 20046000 21273000 17754000 20450000 13134000 22447000 1272100 29152000 20491000 23182000 16030000 20432000 21351000 17434000 19753000 12 12 7 12 12 12 12 12 12 12 12 6720900 11355000 41156 13855000 16291000 17231000 10786000 9734900 10047000 8290100 10020000 6257300 10605000 625220 14008000 15478000 17177000 11206000 10233000 10253000 8156100 9667200 6 6 2 6 6 6 6 6 6 6 6 7384500 12681000 71296 15162000 5242700 5176000 4513700 10311000 11226000 9463600 10430000 6876300 11842000 646910 15144000 5012800 6004400 4824300 10199000 11098000 9277600 10086000 6 6 5 6 6 6 6 6 6 6 6 1887300000 1144800000 742540000 17635 1687 16196 89570;89571;89572;89573;89574;89575;89576;89577;89578;89579;89580 108304;108305;108306;108307;108308;108309;108310;108311;108312;108313;108314;108315;108316 108306 13 SNPGDFTLSVR Unmodified 1191.5884 0.58840088 1523 Q06124;Q06124-3;Q06124-1 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 47.974 48.141 2 2.8425E-14 13064 20211116_3445_TMUAki_TMT10x_S_F6 184.24 130.08 5678200 9803300 104450 10367000 8439000 8683000 5781100 9922800 9586500 8026000 9022800 5287800 9149600 606780 10511000 8031200 8977400 6120800 9969500 9566100 7916700 8721400 3 3 3 3 3 3 3 3 3 3 3 2314400 3551700 36780 4204100 5240900 5614800 3169300 3737700 3486900 2802900 3549200 2155200 3316500 267140 4263900 4975400 5590800 3332900 3867000 3535600 2775900 3421800 1 1 1 1 1 1 1 1 1 1 1 3363900 6251600 67672 6162600 3198100 3068200 2611800 6185200 6099600 5223100 5473700 3132600 5833100 339630 6246900 3055800 3386600 2787900 6102500 6030400 5140800 5299600 2 2 2 2 2 2 2 2 2 2 2 298860000 195020000 103840000 17636 1523 16197 89581;89582;89583 108317;108318;108319;108320 108319 4 SNPGGFGIAPHCLDEGTVR Unmodified 1982.9269 0.92685842 2098 Q7Z7K6-3;Q7Z7K6;Q7Z7K6-2 CENPV Centromere protein V yes no 0 0 0 0 By MS/MS By MS/MS 5.22 1.31 1 2 2 2 2 4 5 45.293 45.422 3 5.3867E-24 11679 20211116_3444_TMUAki_TMT10x_S_F5 168.81 147.87 20931000 35226000 133880 39906000 35933000 37868000 24581000 26647000 27396000 23928000 28361000 19488000 32888000 1850200 40350000 34163000 38451000 25615000 27578000 27781000 23481000 27329000 13 13 8 13 13 13 13 13 13 13 13 13549000 22318000 53840 24986000 29241000 31747000 18959000 17354000 17368000 15015000 17404000 12615000 20835000 1227000 25402000 27772000 31601000 19719000 18301000 17740000 14761000 16788000 7 7 5 7 7 7 7 7 7 7 7 7381100 12909000 80040 14920000 6692200 6120400 5622600 9293500 10027000 8912600 10957000 6872700 12053000 623240 14948000 6391300 6849200 5895500 9277500 10041000 8720200 10541000 6 6 3 6 6 6 6 6 6 6 6 7468800000 3858300000 3610500000 17637 2098 16198 89584;89585;89586;89587;89588;89589;89590;89591;89592 108321;108322;108323;108324;108325;108326;108327;108328;108329;108330;108331;108332;108333;108334 108333 14 SNPSVFVIFQK Unmodified 1264.6816 0.68157298 2071 Q7Z2W4;Q7Z2W4-4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 73.02 72.827 3 0.00024848 25361 20211116_3430_TMUAki_TMT10x_P_F3 85.288 60.071 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17638 2071 16199 89593 108335 108335 1 SNQQLVDIIEK Unmodified 1285.6878 0.68778057 1307 P61289;P61289-2;P61289-3 PSME3 Proteasome activator complex subunit 3 yes no 0 0 0 0 By MS/MS 4 0 1 1 60.588 60.463 3 0.10011 19151 20211116_3442_TMUAki_TMT10x_S_F4 36.445 12.696 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17639 1307 16200 89594 108336 108336 1 SNRDELELELAENR Unmodified 1686.8173 0.81729119 1741 Q14980;Q14980-2;Q14980-4;Q14980-3;Q14980-5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 42.49 42.346 3 2.3676E-37 10889 20211116_3428_TMUAki_TMT10x_P_F1 244 210.16 2613000 4009500 4081.9 4434800 7139700 7640000 4056900 5616700 4644000 4049100 4495100 2432600 3742900 235780 4542100 6765500 7540000 4294500 5765900 4693500 4019200 4340900 3 3 1 3 3 3 3 3 3 3 3 2613000 4009500 4081.9 4434800 7139700 7640000 4056900 5616700 4644000 4049100 4495100 2432600 3742900 235780 4542100 6765500 7540000 4294500 5765900 4693500 4019200 4340900 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 422310000 422310000 0 17640 1741 16201 89595;89596;89597 108337;108338;108339;108340 108337 4 SNRDELELELAENRK Unmodified 1814.9123 0.91225421 1741 Q14980;Q14980-2;Q14980-4;Q14980-3;Q14980-5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 2 By MS/MS By MS/MS 2.75 1.09 2 3 3 4 6 6 40.265 40.196 3;4 2.2709E-43 11681 20211116_3429_TMUAki_TMT10x_P_F2 258.34 217.79 16887000 25804000 120670 31284000 26220000 25515000 18210000 21237000 22872000 20395000 23557000 15724000 24099000 1583400 31441000 24943000 26253000 19035000 21783000 23089000 19954000 22703000 14 14 9 14 14 14 14 14 14 14 14 9334100 14137000 14170 16648000 19615000 19372000 11507000 11597000 12755000 11386000 12767000 8690600 13201000 873650 16847000 18601000 19392000 12134000 12177000 12922000 11129000 12315000 5 5 1 5 5 5 5 5 5 5 5 7553400 11667000 106500 14636000 6604900 6143300 6703600 9639700 10117000 9009300 10790000 7033700 10898000 709800 14594000 6341900 6860800 6900300 9605700 10167000 8824900 10388000 9 9 8 9 9 9 9 9 9 9 9 3364600000 2156300000 1208300000 17641 1741 16202 89598;89599;89600;89601;89602;89603;89604;89605;89606;89607;89608;89609 108341;108342;108343;108344;108345;108346;108347;108348;108349;108350;108351;108352;108353;108354;108355 108342 15 SNTGGQAFPQCVFDHWQILPGDPFDNSSRPSQVVAETR Unmodified 4243.977 0.97700309 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 80.432 80.444 4 7.5821E-32 24704 20211116_3447_TMUAki_TMT10x_S_F8 142.91 134.8 12682000 22214000 78230 19259000 15943000 17745000 15842000 11799000 11081000 11824000 15934000 11808000 20717000 1067100 19834000 15282000 18037000 15927000 12298000 11654000 11547000 15221000 7 7 2 7 7 7 7 7 7 7 7 4663700 7609100 63491 6460400 4365500 8862300 5047000 4785200 4526800 4312200 5373600 4342700 7095800 431490 6707700 4206200 8788600 5067600 5056900 4658000 4231000 5157500 3 3 1 3 3 3 3 3 3 3 3 8018500 14605000 14739 12799000 11577000 8882200 10795000 7014200 6554400 7511900 10560000 7465300 13621000 635580 13126000 11076000 9248200 10860000 7240800 6995600 7316000 10063000 4 4 1 4 4 4 4 4 4 4 4 6195200000 1954500000 4240800000 17642 653 16203 89610;89611;89612;89613 108356;108357;108358;108359;108360;108361;108362 108361 7 SNTLPISLQSIR Unmodified 1327.746 0.74596415 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 58.378 58.182 2 1.0705E-11 17367 20211116_3428_TMUAki_TMT10x_P_F1 168.58 140.38 13042000 22679000 250660 22926000 16267000 20728000 14573000 19120000 18374000 15633000 17369000 12144000 21163000 1238500 23338000 15562000 21215000 14988000 19417000 18490000 15412000 16786000 4 4 2 4 4 4 4 4 4 4 4 7472100 12365000 44228 13165000 10663000 15214000 9734900 10241000 10211000 8382500 9953200 6957000 11541000 635200 13405000 10199000 15260000 9937800 10608000 10358000 8263300 9609500 2 2 1 2 2 2 2 2 2 2 2 5569700 10314000 206430 9760600 5604000 5514100 4838200 8879200 8162200 7250700 7415400 5187100 9622100 603300 9933000 5363300 5954900 5050500 8809200 8131700 7148500 7176500 2 2 1 2 2 2 2 2 2 2 2 1647700000 992650000 655020000 17643 1018 16204 89614;89615;89616;89617 108363;108364;108365;108366 108363 4 SNTPILVDGKDVMPEVNK Unmodified 1955.0034 0.0033774035 522 P06744;P06744-2 GPI Glucose-6-phosphate isomerase yes no 0 0 0 1 By MS/MS 6 0 2 2 58.952 59.012 3 5.1332E-07 17149 20211116_3434_TMUAki_TMT10x_P_F6 97.488 83.861 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17644 522 16205 89618;89619 108367;108368 108368 2 SNTSPEELGPLANQLTSDYGR Unmodified 2248.0608 0.060768941 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 4 1 1 1 1 1 66.438 66.148 3 1.0321E-05 22645 20211116_3430_TMUAki_TMT10x_P_F3 80.41 71.127 2520400 5024500 11805 3662700 2657200 4802500 3411600 2840200 2603100 2908100 3838100 2346800 4683300 221880 3849800 2567600 4778000 3396000 2988800 2727400 2837400 3664200 1 1 1 1 1 1 1 1 1 1 1 2520400 5024500 11805 3662700 2657200 4802500 3411600 2840200 2603100 2908100 3838100 2346800 4683300 221880 3849800 2567600 4778000 3396000 2988800 2727400 2837400 3664200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 567590000 567590000 0 17645 3293 16206 89620;89621 108369;108370 108369 2 SNTVVIMNMQGQIVR 2 Oxidation (M) 1720.86 0.86002441 1881 Q2TAY7;Q2TAY7-2 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes no 0 0 2 0 By MS/MS 6.5 0.5 1 1 2 36.682 36.897 3 0.001115 8181 20211116_3434_TMUAki_TMT10x_P_F6 65.467 52.267 318660 504100 5231.5 633150 849250 716800 458530 319560 338400 308680 418380 296740 470860 38537 638060 804780 716140 481810 344620 352360 301920 401120 4 4 3 4 4 4 4 4 4 4 4 318660 504100 5231.5 633150 849250 716800 458530 319560 338400 308680 418380 296740 470860 38537 638060 804780 716140 481810 344620 352360 301920 401120 4 4 3 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 118360000 118360000 0 17646 1881 16207 89622;89623 108371;108372;108373;108374 108372 2497;2498 4 SNTVVIMNMQGQIVR Oxidation (M) 1704.8651 0.86510978 1881 Q2TAY7;Q2TAY7-2 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes no 0 0 1 0 By MS/MS 8 0 1 1 46.599 46.719 3 5.8162E-05 12811 20211116_3436_TMUAki_TMT10x_P_F8 88.561 74.899 996410 1560800 0 1735000 2411200 2771200 1511800 1958800 2097000 1628600 1972600 927730 1457100 99769 1773100 2289200 2741000 1598600 2022600 2103400 1604200 1906700 1 1 0 1 1 1 1 1 1 1 1 996410 1560800 0 1735000 2411200 2771200 1511800 1958800 2097000 1628600 1972600 927730 1457100 99769 1773100 2289200 2741000 1598600 2022600 2103400 1604200 1906700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 452420000 452420000 0 17647 1881 16207 89624 108375 108375 2497;2498 1 SNVSDAVAQSTR Unmodified 1233.5949 0.59494282 1271 P60174;P60174-1;P60174-4 TPI1 Triosephosphate isomerase yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 4 2 31.774 31.682 2;3 1.1695E-16 7062 20211116_3431_TMUAki_TMT10x_P_F4 210.95 186.87 5697400 10039000 29566 9023100 10427000 9424300 6983200 4323700 5004800 4645000 7468000 5305000 9363900 566150 9282800 9913500 9461500 7202200 4663100 5265500 4523300 7127900 6 6 6 6 6 6 6 6 6 6 6 4428600 7787000 12585 6772400 8928200 8218800 5368600 3357400 3863900 3593900 5716000 4123500 7262300 441910 7002200 8472100 8174300 5585100 3666000 4062400 3500200 5456700 4 4 4 4 4 4 4 4 4 4 4 1268800 2252200 16981 2250700 1499200 1205500 1614600 966380 1140900 1051100 1752000 1181500 2101600 124240 2280600 1441400 1287200 1617100 997150 1203100 1023100 1671200 2 2 2 2 2 2 2 2 2 2 2 626360000 423030000 203320000 17648 1271 16208 89625;89626;89627;89628;89629;89630 108376;108377;108378;108379;108380;108381 108377 6 SNYNFEK Unmodified 900.39775 0.39774656 1368 P62826 RAN GTP-binding nuclear protein Ran yes yes 0 0 0 0 By MS/MS 4 0 1 1 37.122 37.254 2 0.044262 9664 20211116_3442_TMUAki_TMT10x_S_F4 72.23 46.154 371500 533070 0 668620 289510 250310 419410 176510 230270 216690 415440 345880 497910 27130 666270 280700 279140 412770 184390 249110 209970 395030 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 371500 533070 0 668620 289510 250310 419410 176510 230270 216690 415440 345880 497910 27130 666270 280700 279140 412770 184390 249110 209970 395030 1 1 0 1 1 1 1 1 1 1 1 18471000 0 18471000 17649 1368 16209 89631 108382 108382 1 SNYNFEKPFLWLAR Unmodified 1783.9046 0.90459006 1368 P62826 RAN GTP-binding nuclear protein Ran yes yes 0 0 0 1 By MS/MS By MS/MS 3.85 1.03 2 2 5 4 7 6 77.286 77.255 2;3 3.0675E-35 24785 20211116_3431_TMUAki_TMT10x_P_F4 241.35 214.38 306010000 564670000 2125700 410670000 538880000 414720000 460890000 183600000 114910000 210590000 377970000 284920000 526320000 28433000 429890000 514730000 417050000 460870000 199150000 141370000 204560000 356470000 22 22 13 22 22 22 22 22 22 22 22 135790000 240230000 1822700 180060000 205410000 275700000 251520000 84434000 54102000 93601000 165810000 126440000 223940000 13681000 189370000 198210000 270660000 246600000 95773000 67643000 91037000 156490000 11 11 8 11 11 11 11 11 11 11 11 170220000 324440000 302950 230610000 333470000 139020000 209370000 99169000 60803000 116980000 212170000 158480000 302380000 14752000 240520000 316520000 146380000 214270000 103370000 73729000 113520000 199980000 11 11 5 11 11 11 11 11 11 11 11 49271000000 27945000000 21326000000 17650 1368 16210 89632;89633;89634;89635;89636;89637;89638;89639;89640;89641;89642;89643;89644 108383;108384;108385;108386;108387;108388;108389;108390;108391;108392;108393;108394;108395;108396;108397;108398;108399;108400;108401;108402;108403;108404 108387 22 SNYNFEKPFLWLARK Unmodified 1911.9996 0.99955308 1368 P62826 RAN GTP-binding nuclear protein Ran yes yes 0 0 0 2 By MS/MS 6 0 1 1 69.37 69.285 4 1.0866E-37 21737 20211116_3445_TMUAki_TMT10x_S_F6 248.06 226.53 13121000 19888000 239090 22710000 58113000 4269800 10445000 5695000 2845800 4328100 14839000 12219000 18568000 1940800 22693000 54538000 5519200 12852000 5677500 3653100 4283400 13944000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13121000 19888000 239090 22710000 58113000 4269800 10445000 5695000 2845800 4328100 14839000 12219000 18568000 1940800 22693000 54538000 5519200 12852000 5677500 3653100 4283400 13944000 2 2 2 2 2 2 2 2 2 2 2 1217600000 0 1217600000 17651 1368 16211 89645 108405;108406 108405 2 SPADQDRFICIYPAYLNNK Unmodified 2284.0947 0.094652027 570 P09132;P09132-2 SRP19 Signal recognition particle 19 kDa protein yes no 0 0 0 1 By MS/MS 8 0 1 1 65.039 64.997 3 2.6041E-08 19687 20211116_3447_TMUAki_TMT10x_S_F8 107.65 91.889 2971900 5242200 52061 5018000 3672900 3546800 3496900 4099100 3760500 3989000 4376500 2767500 4890700 304730 5113000 3520400 3716400 3564400 4136500 3836000 3900400 4202800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2971900 5242200 52061 5018000 3672900 3546800 3496900 4099100 3760500 3989000 4376500 2767500 4890700 304730 5113000 3520400 3716400 3564400 4136500 3836000 3900400 4202800 1 1 1 1 1 1 1 1 1 1 1 450910000 0 450910000 17652 570 16212 89646 108407 108407 1 SPADQDRFICIYPAYLNNKK Unmodified 2412.1896 0.18961504 570 P09132;P09132-2 SRP19 Signal recognition particle 19 kDa protein yes no 0 0 0 2 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 59.032 58.868 4 0.00021992 17949 20211116_3440_TMUAki_TMT10x_S_F2 65.598 51.867 14998000 22146000 156230 21468000 16430000 23007000 14337000 17469000 16099000 17734000 17968000 13966000 20662000 920770 21972000 15711000 23219000 14706000 18049000 16367000 17309000 17275000 2 2 1 2 2 2 2 2 2 2 2 9475900 12553000 156230 12386000 8729500 17231000 9342200 9816000 9527100 9766600 9924400 8824200 11713000 920770 12720000 8395100 17088000 9449900 10353000 9698200 9540600 9561400 1 1 1 1 1 1 1 1 1 1 1 5522100 9593100 0 9081800 7700400 5776300 4994400 7653200 6572000 7967500 8043200 5141600 8949500 0 9251600 7315500 6130600 5256400 7696000 6669000 7768500 7713500 1 1 0 1 1 1 1 1 1 1 1 2068600000 1536800000 531790000 17653 570 16213 89647;89648;89649 108408 108408 1 SPAFVQLAPLSSK Unmodified 1343.7449 0.74490152 1160 P51610;P51610-2;P51610-4 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 0 0 By MS/MS 2 0 2 2 65.476 65.17 2;3 2.1072E-06 21721 20211116_3429_TMUAki_TMT10x_P_F2 117.79 88.445 5518400 9179300 13513 8830800 7537900 11662000 7267900 6712600 5448300 5511000 7282700 5137200 8563900 371530 9075800 7213500 11594000 7330000 7038700 5687400 5431800 6968600 2 2 1 2 2 2 2 2 2 2 2 5518400 9179300 13513 8830800 7537900 11662000 7267900 6712600 5448300 5511000 7282700 5137200 8563900 371530 9075800 7213500 11594000 7330000 7038700 5687400 5431800 6968600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1017800000 1017800000 0 17654 1160 16214 89650;89651 108409;108410 108409 2 SPAGLQVLNDYLADK Unmodified 1602.8253 0.82533668 792 P24534 EEF1B2 Elongation factor 1-beta yes yes 0 0 0 0 By MS/MS By MS/MS 6.87 1.06 3 4 10 27 19 46 17 53.39 53.447 2;3 1.2208E-43 27145 20211116_3446_TMUAki_TMT10x_S_F7 268.93 231.59 436260000 743390000 4389000 689830000 480400000 594730000 504400000 387240000 389140000 419180000 531270000 406210000 693460000 38114000 706110000 461320000 607080000 506810000 405140000 405970000 408080000 508090000 63 63 36 63 63 63 63 63 63 63 63 209110000 344090000 2538700 316430000 199690000 349890000 224330000 182750000 183050000 196300000 245600000 194710000 320970000 18293000 325270000 192160000 350620000 224980000 194650000 190240000 191160000 234980000 50 50 27 50 50 50 50 50 50 50 50 227160000 399300000 1850200 373400000 280710000 244850000 280070000 204490000 206090000 222890000 285670000 211510000 372490000 19822000 380840000 269160000 256460000 281830000 210500000 215720000 216920000 273110000 13 13 9 13 13 13 13 13 13 13 13 100560000000 49900000000 50664000000 17655 792 16215 89652;89653;89654;89655;89656;89657;89658;89659;89660;89661;89662;89663;89664;89665;89666;89667;89668;89669;89670;89671;89672;89673;89674;89675;89676;89677;89678;89679;89680;89681;89682;89683;89684;89685;89686;89687;89688;89689;89690;89691;89692;89693;89694;89695;89696;89697;89698;89699;89700;89701;89702;89703;89704;89705;89706;89707;89708;89709;89710;89711;89712;89713;89714 108411;108412;108413;108414;108415;108416;108417;108418;108419;108420;108421;108422;108423;108424;108425;108426;108427;108428;108429;108430;108431;108432;108433;108434;108435;108436;108437;108438;108439;108440;108441;108442;108443;108444;108445;108446;108447;108448;108449;108450;108451;108452;108453;108454;108455;108456;108457;108458;108459;108460;108461;108462;108463;108464;108465;108466;108467;108468;108469;108470;108471;108472;108473;108474;108475;108476;108477;108478;108479;108480;108481 108474 71 SPALAFSLAATAQAAPR Unmodified 1641.8839 0.88385462 2535 Q96PU8;Q96PU8-9;Q96PU8-8;Q96PU8-6 QKI Protein quaking yes no 0 0 0 0 By MS/MS 4 0 1 1 67.853 67.675 3 4.5986E-10 22115 20211116_3442_TMUAki_TMT10x_S_F4 111.7 86.978 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17656 2535 16216 89715 108482 108482 1 SPALQILLTNTK Unmodified 1297.7606 0.76055158 1506 Q03426 MVK Mevalonate kinase yes yes 0 0 0 0 By MS/MS 3 0 1 1 72.025 71.654 3 0.0002611 25949 20211116_3441_TMUAki_TMT10x_S_F3 83.455 57.981 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17657 1506 16217 89716 108483 108483 1 SPAPPLLHVAALGQK Unmodified 1497.8667 0.86674799 2181 Q8N163;Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 54.789 54.566 3 3.7953E-21 17422 20211116_3429_TMUAki_TMT10x_P_F2 162.93 144.15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17658 2181 16218 89717;89718 108484;108485 108484 2 SPASDTYIVFGEAK Unmodified 1483.7195 0.71947463 59 E9PAV3;Q13765;E9PAV3-2 NACA Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha yes no 0 0 0 0 By MS/MS By MS/MS 4.5 1.12 4 4 4 4 8 8 61.473 61.418 2;3 9.7087E-34 19515 20211116_3442_TMUAki_TMT10x_S_F4 236.34 204.33 359260000 588210000 5720200 613620000 420270000 587790000 399960000 451440000 454460000 432470000 481860000 334520000 548950000 33318000 623810000 402630000 597330000 408450000 465310000 460930000 423150000 463980000 23 23 10 23 23 23 23 23 23 23 23 200790000 324900000 4021600 344860000 268380000 441820000 255470000 271280000 272530000 251910000 278580000 186970000 303240000 19557000 351860000 257140000 440280000 260340000 283850000 276720000 246820000 268550000 11 11 5 11 11 11 11 11 11 11 11 158470000 263300000 1698600 268760000 151890000 145970000 144490000 180160000 181940000 180560000 203280000 147550000 245710000 13761000 271960000 145500000 157050000 148110000 181460000 184210000 176330000 195440000 12 12 5 12 12 12 12 12 12 12 12 27385000000 14449000000 12936000000 17659 59 16219 89719;89720;89721;89722;89723;89724;89725;89726;89727;89728;89729;89730;89731;89732;89733;89734 108486;108487;108488;108489;108490;108491;108492;108493;108494;108495;108496;108497;108498;108499;108500;108501;108502;108503;108504;108505;108506;108507 108499 22 SPASIEVVKPMEAASAILSQADAR Unmodified 2440.2632 0.26317392 2698 Q9BVP2;Q9BVP2-2 GNL3 Guanine nucleotide-binding protein-like 3 yes no 0 0 0 1 By MS/MS 8 0 1 1 77.531 77.48 3 0.061582 24781 20211116_3447_TMUAki_TMT10x_S_F8 39.893 30.796 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17660 2698 16220 89735 108508 108508 1 SPATSAGPELAGLPR Unmodified 1422.7467 0.74669243 7 A1L020 MEX3A RNA-binding protein MEX3A yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 3 1 2 47.309 47.482 2;3 6.1772E-20 13631 20211116_3433_TMUAki_TMT10x_P_F5 153.74 127.68 2020300 3494900 68233 3707200 2319700 2070100 1945200 4633300 4544700 4317800 3731000 1881600 3261900 235280 3742500 2218900 2267500 2073100 4572000 4480800 4230000 3624300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2020300 3494900 68233 3707200 2319700 2070100 1945200 4633300 4544700 4317800 3731000 1881600 3261900 235280 3742500 2218900 2267500 2073100 4572000 4480800 4230000 3624300 1 1 1 1 1 1 1 1 1 1 1 127400000 0 127400000 17661 7 16221 89736;89737;89738 108509;108510;108511 108509 3 SPAVKPAAAPK Unmodified 1035.6077 0.60767975 1740 Q14978;Q14978-2;Q14978-3 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 0 0 0 1 By MS/MS 1 0 1 1 32.208 32.238 3 1.2545E-05 8817 20211116_3439_TMUAki_TMT10x_S_F1 103.91 88.153 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17662 1740 16222 89739 108512 108512 1 SPDDPSRYISPDQLADLYK Unmodified 2179.0433 0.043327963 520 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 1 By MS/MS 6 0 1 1 70.431 70.342 3 5.1682E-06 22173 20211116_3445_TMUAki_TMT10x_S_F6 87.356 77.299 3068800 5342700 79352 4768200 8512100 3443900 3020600 4578900 4625900 3691400 4355200 2857900 4983200 404610 4885100 8028500 3615600 3400800 4571700 4626200 3641800 4209700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3068800 5342700 79352 4768200 8512100 3443900 3020600 4578900 4625900 3691400 4355200 2857900 4983200 404610 4885100 8028500 3615600 3400800 4571700 4626200 3641800 4209700 1 1 1 1 1 1 1 1 1 1 1 624600000 0 624600000 17663 520 16223 89740 108513 108513 1 SPDFTNENPLETR Unmodified 1518.6951 0.69505079 497 P05023;P05023-3;P05023-4;P05023-2 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes no 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 2 4 4 4 6 50.522 50.474 2;3 4.6968E-27 17266 20211116_3441_TMUAki_TMT10x_S_F3 238.01 211.33 14632000 23632000 127780 28094000 19340000 20870000 13709000 20986000 21541000 18027000 21337000 13624000 22068000 1256500 28238000 18401000 21709000 14443000 21242000 21565000 17728000 20589000 9 9 4 9 9 9 9 9 9 9 9 5309600 7973300 38319 10237000 11310000 13469000 7608300 7352700 8289100 6474600 7722600 4943600 7448400 496370 10332000 10749000 13384000 7932100 7758100 8382900 6359600 7467200 3 3 1 3 3 3 3 3 3 3 3 9322400 15658000 89458 17857000 8030400 7401200 6100800 13633000 13252000 11552000 13614000 8680100 14619000 760170 17906000 7651800 8324900 6510600 13484000 13182000 11368000 13122000 6 6 3 6 6 6 6 6 6 6 6 2210500000 1170400000 1040100000 17664 497 16224 89741;89742;89743;89744;89745;89746;89747;89748;89749;89750 108514;108515;108516;108517;108518;108519;108520;108521;108522;108523;108524 108521 11 SPDLEPVLR Unmodified 1024.5553 0.55530983 34;35 CON__Q2KJ62;CON__P01044-1;CON__P01045-1 no no 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 46.69 46.59 2 4.3472E-05 15735 20211116_3441_TMUAki_TMT10x_S_F3 150.88 90.523 + 9459800 16627000 195890 16578000 15996000 14983000 10202000 16244000 18718000 14455000 15578000 8809400 15514000 1053200 16892000 15204000 15390000 10914000 16399000 18558000 14191000 15124000 6 6 5 6 6 6 6 6 6 6 6 3588600 5849500 62309 5969300 9579000 9009600 5303000 5730000 6620700 5045400 5566900 3341800 5458700 434240 6126600 9080700 8917100 5643400 5970900 6640400 4955800 5402800 2 2 1 2 2 2 2 2 2 2 2 5871200 10777000 133580 10609000 6417300 5973100 4898600 10514000 12097000 9409200 10011000 5467700 10056000 618910 10765000 6123100 6472900 5271100 10428000 11918000 9235000 9721500 4 4 4 4 4 4 4 4 4 4 4 804340000 414300000 390040000 17665 34;35 16225 89751;89752;89753;89754;89755;89756 108525;108526;108527;108528;108529;108530;108531 108530 7 SPDTNYLFMGDYVDR Oxidation (M) 1807.7723 0.77231483 1363 P67775;P62714;P67775-2 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform yes no 0 0 1 0 By MS/MS By MS/MS 3.8 0.4 1 4 3 2 61.035 60.945 2;3 0.0045841 18875 20211116_3431_TMUAki_TMT10x_P_F4 62.813 51.551 14789000 26970000 5773.6 25684000 17876000 19400000 17322000 16163000 16000000 15588000 19396000 13768000 25161000 1036500 26198000 17112000 20079000 17559000 16580000 16456000 15247000 18606000 4 4 1 4 4 4 4 4 4 4 4 3595800 6214500 5773.6 6186200 4370600 7133900 4277900 3865700 4193700 3670500 4211400 3347800 5798700 275870 6327100 4186200 7135600 4341500 4089500 4270700 3592800 4062100 2 2 1 2 2 2 2 2 2 2 2 11193000 20755000 0 19497000 13506000 12266000 13045000 12298000 11807000 11917000 15185000 10420000 19362000 760620 19871000 12925000 12943000 13217000 12490000 12185000 11655000 14544000 2 2 0 2 2 2 2 2 2 2 2 1312100000 978260000 333800000 17666 1363 16226 89757;89758;89759;89760;89761 108532;108533;108534 108533 1829 3 SPEACCELTLQPLR Unmodified 1672.7913 0.79127614 512 P06132 UROD Uroporphyrinogen decarboxylase yes yes 0 0 0 0 By MS/MS 4 0 1 1 53.594 53.642 2 2.4093E-19 16323 20211116_3442_TMUAki_TMT10x_S_F4 151.26 126.48 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17667 512 16227 89762 108535 108535 1 SPEACCELTLQPLRR Unmodified 1828.8924 0.89238717 512 P06132 UROD Uroporphyrinogen decarboxylase yes yes 0 0 0 1 By MS/MS By MS/MS 6.25 0.433 3 1 1 3 43.782 44.139 3 3.5948E-10 11434 20211116_3445_TMUAki_TMT10x_S_F6 138.01 117.35 6659900 10250000 15404 10720000 6370200 5986400 6126400 7583200 7497100 6626900 8417200 6201000 9566200 544250 10832000 6101700 6426400 6269500 7600800 7599700 6511600 8091300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6659900 10250000 15404 10720000 6370200 5986400 6126400 7583200 7497100 6626900 8417200 6201000 9566200 544250 10832000 6101700 6426400 6269500 7600800 7599700 6511600 8091300 2 2 1 2 2 2 2 2 2 2 2 589020000 0 589020000 17668 512 16228 89763;89764;89765;89766 108536;108537;108538;108539 108537 4 SPEAKPLPGKLPK Unmodified 1360.8078 0.80783613 1042 P46087;P46087-2;P46087-4;P46087-3 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 0 0 0 2 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 39.636 39.618 4 0.0030315 9832 20211116_3428_TMUAki_TMT10x_P_F1 69.92 59.435 1795600 2536200 20415 2793500 2906900 2683700 1825100 1697500 1964500 1599100 2289700 1672000 2367500 175190 2830000 2760700 2718600 1912200 1772700 2003900 1565900 2198700 2 2 1 2 2 2 2 2 2 2 2 1259200 1729400 20415 2009900 2455800 2283600 1362400 1196700 1376200 1097100 1574900 1172600 1614700 140180 2034700 2328500 2285100 1439500 1268600 1406500 1075600 1513100 1 1 1 1 1 1 1 1 1 1 1 536380 806830 0 783550 451090 400070 462720 500840 588220 502030 714760 499350 752770 35004 795260 432280 433480 472630 504170 597410 490260 685580 1 1 0 1 1 1 1 1 1 1 1 153700000 116320000 37373000 17669 1042 16229 89767;89768;89769 108540;108541 108540 2 SPEEGAETPVYLALLPPDAEGPHGQFVSEK Unmodified 3163.535 0.53497491 691 P16152 CBR1 Carbonyl reductase [NADPH] 1 yes yes 0 0 0 0 By matching By MS/MS 3.33 0.471 2 1 1 2 75.715 75.601 4 1.1993E-27 27509 20211116_3441_TMUAki_TMT10x_S_F3 157.95 147.53 2253100 4029100 25233 3850700 3068100 2861900 3239800 2249200 2168300 2416300 3013300 2098000 3758900 221720 3926200 2947700 2962700 3244100 2322800 2282700 2353000 2880700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2253100 4029100 25233 3850700 3068100 2861900 3239800 2249200 2168300 2416300 3013300 2098000 3758900 221720 3926200 2947700 2962700 3244100 2322800 2282700 2353000 2880700 2 2 2 2 2 2 2 2 2 2 2 1466500000 342190000 1124300000 17670 691 16230 89770;89771;89772 108542;108543 108542 2 SPELVQAMFPK Unmodified 1245.6427 0.64274463 3073 Q9UBB4;Q9UBB4-2 ATXN10 Ataxin-10 yes no 0 0 0 0 By MS/MS 8 0 1 1 68.26 68.381 2 0.091779 21607 20211116_3436_TMUAki_TMT10x_P_F8 54.608 27.493 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17671 3073 16231 89773 108544 108544 1 SPELVQAMFPK Oxidation (M) 1261.6377 0.63765925 3073 Q9UBB4;Q9UBB4-2 ATXN10 Ataxin-10 yes no 0 0 1 0 By MS/MS 6.5 0.5 1 1 2 54.731 55.036 3 0.028173 15825 20211116_3445_TMUAki_TMT10x_S_F6 56.225 38.789 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17672 3073 16231 89774;89775 108545;108546 108545 3120 2 SPEVLLGSAR Unmodified 1027.5662 0.56620887 517 P06493;P06493-2 CDK1 Cyclin-dependent kinase 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 45.291 45.435 2 6.4773E-05 11888 20211116_3445_TMUAki_TMT10x_S_F6 129.83 97.683 30825000 50003000 156790 54536000 51582000 47324000 34370000 40453000 42668000 34396000 43979000 28700000 46675000 2660000 55208000 49014000 48501000 36020000 41296000 43091000 33842000 42384000 7 7 3 7 7 7 7 7 7 7 7 14936000 22496000 73584 25429000 36187000 33674000 19949000 18550000 19957000 16368000 20388000 13907000 21002000 1556200 25858000 34291000 33456000 21084000 19559000 20318000 16075000 19655000 4 4 2 4 4 4 4 4 4 4 4 15889000 27507000 83209 29107000 15395000 13650000 14421000 21903000 22710000 18028000 23590000 14793000 25673000 1103800 29350000 14723000 15045000 14936000 21737000 22772000 17767000 22729000 3 3 1 3 3 3 3 3 3 3 3 1402700000 599590000 803080000 17673 517 16232 89776;89777;89778;89779;89780 108547;108548;108549;108550;108551;108552;108553;108554 108554 8 SPFEVYVDK Unmodified 1082.5284 0.52842638 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 60.815 60.865 2 7.8674E-05 17963 20211116_3444_TMUAki_TMT10x_S_F5 141.88 98.851 43463000 65318000 80748 78527000 55989000 57866000 42399000 48750000 47174000 45255000 55088000 40468000 60998000 3696500 78869000 53338000 60020000 43866000 49922000 48064000 44342000 52896000 7 7 2 7 7 7 7 7 7 7 7 20532000 28240000 32188 33936000 34391000 39102000 22839000 21981000 22265000 19916000 24216000 19117000 26373000 1821900 34295000 32681000 39131000 23753000 23151000 22745000 19536000 23300000 3 3 1 3 3 3 3 3 3 3 3 22931000 37077000 48559 44592000 21598000 18765000 19560000 26770000 24909000 25339000 30872000 21351000 34625000 1874500 44574000 20657000 20889000 20112000 26771000 25318000 24806000 29597000 4 4 1 4 4 4 4 4 4 4 4 3905100000 2349300000 1555800000 17674 755 16233 89781;89782;89783;89784;89785;89786 108555;108556;108557;108558;108559;108560;108561 108559 7 SPFLQVFNNSPDESSYYR Unmodified 2148.9752 0.9752484 1809 Q15437 SEC23B Protein transport protein Sec23B yes yes 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 74.214 74.287 3 0.00020449 25889 20211116_3446_TMUAki_TMT10x_S_F7 66.553 61.498 15945000 26753000 76446 23931000 18015000 26685000 19830000 19707000 19643000 20519000 21854000 14846000 24953000 1333600 24654000 17318000 26858000 20014000 20413000 20070000 20007000 21014000 2 2 1 2 2 2 2 2 2 2 2 8360100 13798000 0 11888000 8530200 16497000 10229000 10359000 10048000 10670000 11305000 7783400 12868000 606880 12332000 8216100 16384000 10281000 10852000 10275000 10408000 10866000 1 1 0 1 1 1 1 1 1 1 1 7584600 12955000 76446 12043000 9484800 10188000 9601000 9347200 9595000 9849100 10550000 7062600 12085000 726680 12322000 9102000 10475000 9732400 9561000 9795400 9598400 10147000 1 1 1 1 1 1 1 1 1 1 1 1269700000 517650000 752060000 17675 1809 16234 89787;89788;89789 108562;108563 108563 2 SPFSVAVSPSLDLSK Unmodified 1532.8086 0.80862399 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 4 4 4 4 72.521 72.458 2;3 2.4144E-33 22761 20211116_3447_TMUAki_TMT10x_S_F8 227.57 186.29 82989000 146550000 6039500 134300000 95642000 184860000 103580000 119960000 95762000 115410000 114190000 77314000 136700000 12491000 138630000 92259000 183740000 104410000 125100000 98417000 112900000 109580000 9 9 7 9 9 9 9 9 9 9 9 69488000 122160000 5907100 112980000 77814000 167810000 87876000 103230000 79747000 99003000 95907000 64743000 113960000 11247000 116730000 75214000 166120000 88358000 108090000 82058000 96866000 92017000 6 6 5 6 6 6 6 6 6 6 6 13500000 24387000 132430 21317000 17828000 17051000 15707000 16729000 16015000 16406000 18279000 12571000 22744000 1244300 21900000 17045000 17626000 16052000 17015000 16359000 16037000 17563000 3 3 2 3 3 3 3 3 3 3 3 15186000000 8486400000 6699900000 17676 755 16235 89790;89791;89792;89793;89794;89795;89796;89797 108564;108565;108566;108567;108568;108569;108570;108571;108572 108572 9 SPFTVGVAAPLDLSK Unmodified 1500.8188 0.81879474 328 O75369;O75369-8;O75369-6;O75369-3;O75369-2;O75369-9;O75369-5;O75369-4;O75369-7 FLNB Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 75.074 75.089 3 6.3096E-05 24400 20211116_3436_TMUAki_TMT10x_P_F8 87.519 51.782 5494200 9114600 41302 7585900 6052000 14729000 7328300 9313100 10202000 9106800 7610500 5115900 8499200 501810 7953700 5837600 14443000 7455600 9736100 10161000 8902700 7421800 2 2 2 2 2 2 2 2 2 2 2 5494200 9114600 41302 7585900 6052000 14729000 7328300 9313100 10202000 9106800 7610500 5115900 8499200 501810 7953700 5837600 14443000 7455600 9736100 10161000 8902700 7421800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 716840000 716840000 0 17677 328 16236 89798;89799;89800 108573;108574;108575;108576 108573 4 SPFVVNVAPPLDLSK Unmodified 1581.8766 0.87664397 1703 Q14315;Q14315-2 FLNC Filamin-C yes no 0 0 0 0 By matching By MS/MS 1 0 2 1 1 77.582 77.556 3 0.04383 27235 20211116_3439_TMUAki_TMT10x_S_F1 38.093 17.14 11958000 18574000 0 16441000 13783000 9718400 13152000 6237400 5489000 7716200 12852000 11132000 17323000 736740 16823000 13182000 10237000 13137000 6561700 6180700 7475100 12170000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11958000 18574000 0 16441000 13783000 9718400 13152000 6237400 5489000 7716200 12852000 11132000 17323000 736740 16823000 13182000 10237000 13137000 6561700 6180700 7475100 12170000 1 1 0 1 1 1 1 1 1 1 1 1188100000 950850000 237280000 17678 1703 16237 89801;89802 108577 108577 1 SPGETSKPRPFAGGGYR Unmodified 1762.8751 0.87508084 3203 Q9UNZ2;Q9UNZ2-5;Q9UNZ2-6 NSFL1C NSFL1 cofactor p47 yes no 0 0 0 2 By MS/MS By MS/MS 1.4 0.49 3 2 4 1 32.366 32.282 3;4 5.4131E-29 6866 20211116_3428_TMUAki_TMT10x_P_F1 183.36 155.71 2087900 3091900 24406 4226000 6483300 4497200 2648100 3179000 4019800 2441900 3594700 1944200 2889300 255160 4235200 6121400 4535100 2929100 3276600 4014300 2415300 3480800 4 4 3 4 4 4 4 4 4 4 4 1349000 2008600 13533 2712400 5754800 3852000 1909700 2026900 2664500 1604400 2266000 1256200 1876900 183920 2734400 5422000 3812800 2161500 2140300 2663500 1584300 2198300 3 3 2 3 3 3 3 3 3 3 3 738890 1083200 10873 1513700 728520 645270 738410 1152000 1355300 837530 1328600 688060 1012400 71247 1500800 699450 722310 767580 1136300 1350900 830930 1282500 1 1 1 1 1 1 1 1 1 1 1 642010000 564760000 77249000 17679 3203 16238 89803;89804;89805;89806;89807 108578;108579;108580;108581 108578 4 SPGKAEAESDALPDDTVIESEALPSDIAAEAR Unmodified 3253.5474 0.54739009 2756 Q9GZR7;Q9GZR7-2 DDX24 ATP-dependent RNA helicase DDX24 yes no 0 0 0 1 By MS/MS 1 0 3 3 67.746 67.746 3;4 0.00033593 21296 20211116_3428_TMUAki_TMT10x_P_F1 66.1 60.197 2099500 3136500 77146 3372000 2103000 3963200 2695400 2592800 2365300 2543700 2727400 1955400 2927600 246010 3432200 2036000 3970200 2692900 2703900 2433600 2486300 2619800 1 1 1 1 1 1 1 1 1 1 1 2099500 3136500 77146 3372000 2103000 3963200 2695400 2592800 2365300 2543700 2727400 1955400 2927600 246010 3432200 2036000 3970200 2692900 2703900 2433600 2486300 2619800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 796700000 796700000 0 17680 2756 16239 89808;89809;89810 108582;108583;108584 108584 3 SPGLYFLTAGDQGTLR Unmodified 1694.8628 0.86278482 1563 Q12788 TBL3 Transducin beta-like protein 3 yes yes 0 0 0 0 By MS/MS 8 0 2 2 70.997 70.825 2;3 1.0285E-05 22130 20211116_3447_TMUAki_TMT10x_S_F8 97.073 59.648 6071800 10497000 58474 10133000 6866900 6233700 6586700 6733100 6539900 6641100 7652600 5653700 9793700 547680 10305000 6579500 6602200 6694400 6817800 6694800 6489800 7347700 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6071800 10497000 58474 10133000 6866900 6233700 6586700 6733100 6539900 6641100 7652600 5653700 9793700 547680 10305000 6579500 6602200 6694400 6817800 6694800 6489800 7347700 3 3 2 3 3 3 3 3 3 3 3 876250000 0 876250000 17681 1563 16240 89811;89812 108585;108586;108587 108587 3 SPGSVVFR Unmodified 847.4552 0.45520186 357 O75787;O75787-2 ATP6AP2 Renin receptor yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 36.673 37.184 2 0.0036769 8825 20211116_3436_TMUAki_TMT10x_P_F8 97.033 56.83 1000000 1565200 17815 1701300 999750 904880 1047400 843700 892940 825960 1202400 931270 1461000 99509 1714100 960880 969580 1055200 860370 926160 807410 1150400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1000000 1565200 17815 1701300 999750 904880 1047400 843700 892940 825960 1202400 931270 1461000 99509 1714100 960880 969580 1055200 860370 926160 807410 1150400 2 2 2 2 2 2 2 2 2 2 2 36879000 0 36879000 17682 357 16241 89813;89814 108588;108589;108590 108588 3 SPGVVISDDEPGYDLDLFCIPNHYAEDLER Unmodified 3434.5613 0.56126601 470 P00492 HPRT1 Hypoxanthine-guanine phosphoribosyltransferase yes yes 0 0 0 0 By MS/MS 1 0 1 1 78.91 78.91 3 1.1531E-10 25855 20211116_3428_TMUAki_TMT10x_P_F1 97.063 91.613 817940 1475800 0 1218600 809520 1550800 1034100 543470 666050 918620 934520 761280 1376100 30012 1266300 779400 1536700 1025800 614630 703220 881720 893180 1 1 0 1 1 1 1 1 1 1 1 817940 1475800 0 1218600 809520 1550800 1034100 543470 666050 918620 934520 761280 1376100 30012 1266300 779400 1536700 1025800 614630 703220 881720 893180 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1215300000 1215300000 0 17683 470 16242 89815 108591 108591 1 SPIAEAVFR Unmodified 988.53418 0.53418046 794 P24666;P24666-2;P24666-4;P24666-3 ACP1 Low molecular weight phosphotyrosine protein phosphatase yes no 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 51.933 52.235 2 0.000474 14670 20211116_3445_TMUAki_TMT10x_S_F6 121.09 82.3 31016000 48893000 103000 53338000 42293000 45787000 32242000 39164000 33545000 34403000 41164000 28877000 45639000 2525000 53987000 40286000 46962000 33271000 40011000 34340000 33796000 39474000 6 6 2 6 6 6 6 6 6 6 6 15177000 23090000 25940 25529000 27007000 32236000 18416000 18371000 15903000 16146000 19519000 14131000 21554000 1326000 25971000 25673000 32115000 19052000 19312000 16417000 15860000 18718000 3 3 1 3 3 3 3 3 3 3 3 15838000 25803000 77061 27810000 15286000 13551000 13826000 20792000 17642000 18258000 21645000 14746000 24084000 1199000 28016000 14613000 14847000 14219000 20699000 17923000 17936000 20756000 3 3 1 3 3 3 3 3 3 3 3 2584000000 1492500000 1091500000 17684 794 16243 89816;89817;89818;89819;89820;89821 108592;108593;108594;108595;108596;108597 108596 6 SPIAEAVFRK Unmodified 1116.6291 0.62914348 794 P24666;P24666-2;P24666-4;P24666-3 ACP1 Low molecular weight phosphotyrosine protein phosphatase yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 48.913 48.725 3 4.9249E-05 15090 20211116_3429_TMUAki_TMT10x_P_F2 125.68 100.12 6096600 9154200 0 10037000 10011000 9833800 6627900 6872400 6057800 6246700 7576400 5676000 8545100 495110 10174000 9509600 9964000 6882200 7118100 6241600 6126600 7261700 3 3 0 3 3 3 3 3 3 3 3 4006600 5814100 0 6391700 7970800 8023600 4750800 4485000 3891200 4090700 5239500 3730100 5427400 336180 6504200 7558500 7993700 4960700 4726800 4044100 4011400 5012600 2 2 0 2 2 2 2 2 2 2 2 2089900 3340000 0 3645300 2040100 1810200 1877100 2387400 2166600 2156000 2336900 1945800 3117700 158920 3669800 1951100 1970200 1921500 2391300 2197600 2115200 2249000 1 1 0 1 1 1 1 1 1 1 1 316190000 158720000 157470000 17685 794 16244 89822;89823 108598;108599;108600 108599 3 SPIAPEELALVHNLR Unmodified 1657.9152 0.91515474 1152 P51398;P51398-2;P51398-3 DAP3 28S ribosomal protein S29, mitochondrial yes no 0 0 0 0 By MS/MS 6 0 1 1 60.134 60.155 3 2.33E-14 17997 20211116_3445_TMUAki_TMT10x_S_F6 127.3 97.755 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17686 1152 16245 89824 108601 108601 1 SPIAPEELALVHNLRK Unmodified 1786.0101 0.010117761 1152 P51398;P51398-2;P51398-3 DAP3 28S ribosomal protein S29, mitochondrial yes no 0 0 0 1 By MS/MS 8 0 1 1 56.244 56.206 4 2.2446E-15 16131 20211116_3447_TMUAki_TMT10x_S_F8 153.09 138.86 2664400 4177600 16702 4962300 2466200 1777500 2108500 1693900 1447600 1514800 2867000 2481000 3901100 233690 4959300 2356800 2005300 2137000 1721100 1551900 1486800 2721800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2664400 4177600 16702 4962300 2466200 1777500 2108500 1693900 1447600 1514800 2867000 2481000 3901100 233690 4959300 2356800 2005300 2137000 1721100 1551900 1486800 2721800 1 1 1 1 1 1 1 1 1 1 1 789100000 0 789100000 17687 1152 16246 89825 108602 108602 1 SPIIFIGTGEHIDDFEPFK Unmodified 2161.0732 0.073171528 1286 P61011;P61011-2 SRP54 Signal recognition particle 54 kDa protein yes no 0 0 0 0 By MS/MS 5 0.816 1 1 1 3 78.358 78.344 3 0.078657 25045 20211116_3444_TMUAki_TMT10x_S_F5 29.021 12.715 2698100 4445600 215430 4592900 3195800 3125300 3402300 2459000 2160300 2456200 3156200 2513800 4148800 431440 4653100 3082500 3259400 3401800 2533700 2287400 2399000 3013800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2698100 4445600 215430 4592900 3195800 3125300 3402300 2459000 2160300 2456200 3156200 2513800 4148800 431440 4653100 3082500 3259400 3401800 2533700 2287400 2399000 3013800 1 1 1 1 1 1 1 1 1 1 1 1490500000 0 1490500000 17688 1286 16247 89826;89827;89828 108603 108603 1 SPILVATAVAAR Unmodified 1167.6976 0.69755739 104 O00571;O00571-2;O15523;O15523-2 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 0 0 By MS/MS By MS/MS 2.89 1.97 2 2 4 1 4 5 55.863 55.62 2;3 2.4719E-09 19422 20211116_3441_TMUAki_TMT10x_S_F3 151.98 129.98 39017000 67508000 476070 70559000 52266000 73320000 47654000 50599000 47230000 49291000 51869000 36331000 63004000 3762400 71808000 50021000 74013000 48565000 52553000 48231000 48194000 49893000 10 10 7 10 10 10 10 10 10 10 10 26773000 46257000 406500 48013000 39788000 61764000 35882000 34681000 32407000 34394000 35259000 24931000 43169000 2696000 49062000 38071000 61465000 36493000 36620000 33222000 33603000 33925000 6 6 4 6 6 6 6 6 6 6 6 12244000 21251000 69576 22546000 12478000 11556000 11772000 15918000 14822000 14897000 16610000 11401000 19835000 1066400 22745000 11950000 12548000 12072000 15934000 15009000 14591000 15968000 4 4 3 4 4 4 4 4 4 4 4 6906300000 3773500000 3132800000 17689 104 16248 89829;89830;89831;89832;89833;89834;89835;89836;89837 108604;108605;108606;108607;108608;108609;108610;108611;108612;108613;108614 108613 11 SPISQLDCLNR Unmodified 1301.6398 0.63978452 1512 Q04726;Q04726-3;Q04726-2;Q04726-7;Q04726-6;Q04726-5;Q04726-4 TLE3 Transducin-like enhancer protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 3 1 50.375 50.52 2 8.6219E-16 14024 20211116_3445_TMUAki_TMT10x_S_F6 206.73 169.38 4173700 6902700 184.75 8018600 6133900 6467000 4095000 5549700 5096400 4595100 5865200 3885900 6445100 353750 8078300 5828900 6663200 4291300 5660200 5168200 4527200 5634100 2 2 1 2 2 2 2 2 2 2 2 1895100 3008600 184.75 3634000 4225400 4795500 2603400 2696400 2442400 2195600 2744500 1764500 2809700 189930 3680500 4010700 4766500 2720600 2832400 2502400 2165000 2638100 1 1 1 1 1 1 1 1 1 1 1 2278600 3894000 0 4384600 1908500 1671500 1491500 2853300 2654000 2399500 3120700 2121400 3635400 163830 4397800 1818200 1896700 1570700 2827800 2665700 2362200 2996000 1 1 0 1 1 1 1 1 1 1 1 665740000 465150000 200590000 17690 1512 16249 89838;89839;89840;89841 108615;108616;108617 108617 3 SPISVAAAAIYMASQASAEK Unmodified 1964.9877 0.98772734 1468 Q00403 GTF2B Transcription initiation factor IIB yes yes 0 0 0 0 By MS/MS 4 0 1 1 81.068 81.077 3 7.6802E-07 27152 20211116_3431_TMUAki_TMT10x_P_F4 91.637 66.844 2301000 3329500 0 3675500 2102900 2677800 2438400 1082900 1057200 1355900 2239300 2142200 3108100 149010 3710200 2022200 2753700 2413100 1189700 1177900 1313000 2123600 1 1 0 1 1 1 1 1 1 1 1 2301000 3329500 0 3675500 2102900 2677800 2438400 1082900 1057200 1355900 2239300 2142200 3108100 149010 3710200 2022200 2753700 2413100 1189700 1177900 1313000 2123600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 221460000 221460000 0 17691 1468 16250 89842 108618 108618 1 SPISVPGGSALISNLGK Unmodified 1595.8883 0.88827129 1160 P51610;P51610-2;P51610-4 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 0 0 By MS/MS By MS/MS 2.12 0.781 2 3 3 4 4 71.578 71.308 2;3 6.686E-23 24191 20211116_3429_TMUAki_TMT10x_P_F2 179.14 154.29 26284000 45626000 311850 43622000 32700000 42674000 31685000 30265000 28926000 30860000 34463000 24475000 42567000 2549900 44629000 31347000 43253000 32107000 31415000 29745000 30115000 33074000 9 9 8 9 9 9 9 9 9 9 9 14177000 23700000 222370 22202000 16266000 28989000 18087000 16424000 15294000 16494000 18123000 13201000 22109000 1402200 22857000 15656000 28831000 18164000 17335000 15782000 16106000 17395000 5 5 4 5 5 5 5 5 5 5 5 12108000 21926000 89476 21420000 16433000 13685000 13598000 13840000 13632000 14366000 16341000 11274000 20458000 1147800 21772000 15691000 14422000 13942000 14080000 13963000 14009000 15679000 4 4 4 4 4 4 4 4 4 4 4 6100200000 2897700000 3202500000 17692 1160 16251 89843;89844;89845;89846;89847;89848;89849;89850 108619;108620;108621;108622;108623;108624;108625;108626;108627;108628;108629 108621 11 SPITGNDLSPPVSFNLMFK Oxidation (M) 2079.0347 0.034677532 1001 P41250 GARS Glycine--tRNA ligase yes yes 0 0 1 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 78.132 78.105 3 8.953E-05 25541 20211116_3428_TMUAki_TMT10x_P_F1 73.11 54.653 7940500 14178000 28047 11945000 10396000 14070000 11141000 10367000 10380000 10167000 11555000 7393400 13221000 702960 12375000 9987400 14120000 11238000 10722000 10635000 9937900 11111000 3 3 1 3 3 3 3 3 3 3 3 4624700 8179200 28047 6848200 4732700 9934200 6343200 5683200 5639900 5769000 6608700 4306200 7627100 404820 7126400 4579700 9834400 6328200 5995300 5802800 5630800 6345100 2 2 1 2 2 2 2 2 2 2 2 3315800 5999000 0 5096900 5663200 4136100 4797700 4684000 4740100 4398100 4946800 3087300 5594300 298130 5249100 5407700 4285200 4910000 4726200 4832100 4307200 4765600 1 1 0 1 1 1 1 1 1 1 1 3743500000 2184900000 1558600000 17693 1001 16252 89851;89852;89853 108630;108631;108632 108630 1291 3 SPLAGDFITMQCR Unmodified 1494.6959 0.69591919 459 O96019;O96019-2 ACTL6A Actin-like protein 6A yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 61.771 62.13 2 3.0405E-12 20235 20211116_3435_TMUAki_TMT10x_P_F7 132.32 115.55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17694 459 16253 89854;89855 108633;108634 108633 2 SPLAGDFITMQCR Oxidation (M) 1510.6908 0.69083381 459 O96019;O96019-2 ACTL6A Actin-like protein 6A yes no 0 0 1 0 By MS/MS 7 0 1 1 53.879 54.398 2 0.097217 17613 20211116_3446_TMUAki_TMT10x_S_F7 52.725 39.729 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17695 459 16253 89856 108635 108635 340 1 SPLAQMEEERR Oxidation (M) 1360.6405 0.6405128 1838 Q16181;Q16181-2 SEPT7 Septin-7 yes no 0 0 1 1 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 27.717 27.544 3 9.3033E-05 8232 20211116_3441_TMUAki_TMT10x_S_F3 96.334 73.19 416310 688480 5082.5 710040 694310 685310 468460 377500 442870 419970 565450 387640 642500 39615 722470 660140 692760 486200 400620 456010 408420 541670 4 4 2 4 4 4 4 4 4 4 4 240910 399580 5082.5 398490 525090 527740 285650 212140 245980 246510 323880 224340 372840 27929 408530 497720 522560 301040 232640 254750 239340 310030 3 3 2 3 3 3 3 3 3 3 3 175400 288900 0 311550 169230 157580 182810 165360 196890 173460 241560 163290 269660 11686 313930 162420 170200 185160 167970 201270 169080 231640 1 1 0 1 1 1 1 1 1 1 1 106630000 67940000 38695000 17696 1838 16254 89857;89858;89859 108636;108637;108638;108639 108639 2450 4 SPLAQMEEERR Unmodified 1344.6456 0.64559818 1838 Q16181;Q16181-2 SEPT7 Septin-7 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 1.12 1 1 1 1 3 1 34.832 34.677 3 1.5673E-15 9373 20211116_3429_TMUAki_TMT10x_P_F2 198.55 162.88 2358800 3508000 35607 4583400 5425800 3509700 2911700 2202000 2152500 1954300 3320200 2196500 3277400 269320 4583800 5141300 3612300 3061400 2297400 2264400 1918800 3166700 3 3 2 3 3 3 3 3 3 3 3 1546200 2202600 17763 2972100 4657700 2926700 2095000 1465100 1416500 1258500 2149200 1439800 2058100 185940 2977000 4402500 2951500 2238100 1557200 1496700 1237600 2050600 2 2 1 2 2 2 2 2 2 2 2 812610 1305400 17844 1611300 768020 583050 816630 736850 736010 695800 1171000 756760 1219300 83377 1606900 738720 660860 823310 740190 767730 681240 1116200 1 1 1 1 1 1 1 1 1 1 1 347840000 132890000 214950000 17697 1838 16254 89860;89861;89862;89863 108640;108641;108642;108643 108640 4 SPLAQMEEERREHVAK Oxidation (M) 1924.9425 0.94250848 1838 Q16181;Q16181-2 SEPT7 Septin-7 yes no 0 0 1 2 By MS/MS By matching 4.67 0.471 1 2 2 1 29.557 29.58 5 0.011698 6222 20211116_3431_TMUAki_TMT10x_P_F4 55.322 32.887 204140 300120 726.73 316500 363920 363690 221400 199210 224290 186090 245030 190080 280100 19840 322430 345400 363890 232120 210460 228780 182290 235730 1 1 1 1 1 1 1 1 1 1 1 204140 300120 726.73 316500 363920 363690 221400 199210 224290 186090 245030 190080 280100 19840 322430 345400 363890 232120 210460 228780 182290 235730 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16629000 16027000 601610 17698 1838 16255 89864;89865;89866 108644 108644 2450 1 SPLFVGK Unmodified 746.43268 0.4326755 45 CON__P34955 yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 3.04 1 2 1 2 3 3 50.241 50.29 2 0.011476 15702 20211116_3429_TMUAki_TMT10x_P_F2 97.071 42.546 + 21157000 32236000 196670 31259000 35675000 32456000 26131000 46396000 48752000 40648000 35405000 19701000 30076000 2111400 31977000 33977000 33303000 27705000 46296000 48134000 39936000 34568000 7 7 6 7 7 7 7 7 7 7 7 9810600 14798000 138090 14742000 20446000 22987000 15859000 21096000 22423000 18776000 16395000 9135700 13808000 1091000 15167000 19498000 22867000 16530000 21475000 22310000 18433000 16002000 3 3 3 3 3 3 3 3 3 3 3 11346000 17438000 58585 16517000 15229000 9468700 10271000 25299000 26330000 21872000 19010000 10565000 16268000 1020400 16810000 14479000 10437000 11175000 24821000 25824000 21503000 18565000 4 4 3 4 4 4 4 4 4 4 4 1418000000 873090000 544940000 17699 45 16256 89867;89868;89869;89870;89871;89872 108645;108646;108647;108648;108649;108650;108651;108652 108645 8 SPLIIFSDCDMNNAVK Unmodified 1822.8594 0.8593557 1088 P49189;P49189-2;P49189-3 ALDH9A1 4-trimethylaminobutyraldehyde dehydrogenase yes no 0 0 0 0 By MS/MS 7 0 1 1 76.001 76.104 3 0.00043188 26651 20211116_3446_TMUAki_TMT10x_S_F7 70.529 52.612 2214500 4020200 0 3786800 3248800 2132300 2635000 2174700 1832900 2408900 2199400 2061600 3750400 153900 3854900 3096800 2275300 2680100 2216000 1912700 2343000 2110400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2214500 4020200 0 3786800 3248800 2132300 2635000 2174700 1832900 2408900 2199400 2061600 3750400 153900 3854900 3096800 2275300 2680100 2216000 1912700 2343000 2110400 1 1 0 1 1 1 1 1 1 1 1 207000000 0 207000000 17700 1088 16257 89873 108653 108653 1 SPLLAGGSPPQPVVPAHK Unmodified 1750.973 0.97300397 2253 Q8NFH5;Q8NFH5-2 NUP35 Nucleoporin NUP53 yes no 0 0 0 0 By MS/MS 1 0 1 1 49.654 49.392 3 7.6681E-05 15829 20211116_3439_TMUAki_TMT10x_S_F1 76.151 57.076 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17701 2253 16258 89874 108654 108654 1 SPLLQLPHIEEDNLR Unmodified 1772.9421 0.94209778 3109 Q9UGP8 SEC63 Translocation protein SEC63 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.894 2 1 2 3 2 62.678 62.701 3 1.2817E-06 19585 20211116_3431_TMUAki_TMT10x_P_F4 105.53 93.913 14479000 24719000 526960 23995000 20557000 30517000 20542000 19034000 17539000 17629000 19171000 13485000 23062000 1776600 24627000 19743000 30428000 20745000 19890000 18032000 17275000 18443000 5 5 5 5 5 5 5 5 5 5 5 12198000 20633000 486640 20130000 17597000 27985000 17917000 15710000 14872000 14537000 15973000 11361000 19251000 1540500 20689000 16911000 27749000 18063000 16557000 15302000 14245000 15374000 4 4 4 4 4 4 4 4 4 4 4 2281000 4085100 40316 3864700 2959500 2532100 2624900 3323900 2667200 3092500 3198200 2124100 3811000 236180 3938300 2831700 2679500 2681400 3332600 2730400 3029900 3068700 1 1 1 1 1 1 1 1 1 1 1 2595400000 1824600000 770780000 17702 3109 16259 89875;89876;89877;89878;89879 108655;108656;108657;108658;108659 108655 5 SPLLQLPHIEEDNLRR Unmodified 1929.0432 0.043208804 3109 Q9UGP8 SEC63 Translocation protein SEC63 homolog yes yes 0 0 0 1 By MS/MS 6 0 1 1 54.219 54.324 4 3.2617E-05 15595 20211116_3445_TMUAki_TMT10x_S_F6 87.429 65.871 7855400 11496000 99409 13555000 7498700 6438300 6953300 9141900 8644500 8242700 10599000 7314900 10734000 738920 13577000 7182400 7058600 7133900 9131500 8789700 8087300 10164000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7855400 11496000 99409 13555000 7498700 6438300 6953300 9141900 8644500 8242700 10599000 7314900 10734000 738920 13577000 7182400 7058600 7133900 9131500 8789700 8087300 10164000 2 2 2 2 2 2 2 2 2 2 2 335630000 0 335630000 17703 3109 16260 89880 108660;108661 108661 2 SPLMSEFQSQISSNPELAAIFESIQK Oxidation (M) 2896.4164 0.41643968 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 1 0 By MS/MS By MS/MS 6.43 1.05 2 1 3 1 3 4 81.441 81.454 3;4 6.8225E-24 28861 20211116_3446_TMUAki_TMT10x_S_F7 154.14 142.83 7970700 12684000 69918 13602000 8551700 8991600 9177400 5011600 5745000 5987700 8683200 7421800 11839000 704580 13743000 8217800 9355000 9170100 5325500 6099000 5807700 8285400 10 10 6 10 10 10 10 10 10 10 10 3408000 5444800 11134 5935900 3063000 4630900 3441600 2074100 2463200 2555500 3598500 3173100 5082400 268740 6001300 2945900 4740700 3440900 2252200 2588900 2476000 3436200 5 5 3 5 5 5 5 5 5 5 5 4562600 7239500 58783 7666200 5488600 4360700 5735800 2937500 3281800 3432200 5084700 4248600 6756800 435850 7741200 5271900 4614300 5729200 3073300 3510000 3331700 4849200 5 5 3 5 5 5 5 5 5 5 5 2381700000 1178900000 1202800000 17704 2116 16261 89881;89882;89883;89884;89885;89886;89887 108662;108663;108664;108665;108666;108667;108668;108669;108670;108671 108670 2603 10 SPLPIVR Unmodified 780.48577 0.48577371 1754 Q15021 NCAPD2 Condensin complex subunit 1 yes yes 0 0 0 0 By MS/MS 7 0 1 1 41.192 41.796 2 0.08807 12449 20211116_3446_TMUAki_TMT10x_S_F7 57.102 29.982 684020 1048200 10029 1148900 651880 512130 650570 509910 495960 532460 788290 636970 978460 65607 1155500 625630 560960 655190 519230 521690 519100 751390 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 684020 1048200 10029 1148900 651880 512130 650570 509910 495960 532460 788290 636970 978460 65607 1155500 625630 560960 655190 519230 521690 519100 751390 1 1 1 1 1 1 1 1 1 1 1 97928000 0 97928000 17705 1754 16262 89888 108672 108672 1 SPLQSVVVR Unmodified 983.57638 0.57637963 3252 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 42.733 42.916 2 3.4234E-05 10592 20211116_3447_TMUAki_TMT10x_S_F8 153.24 127.35 10828000 16616000 93664 18040000 18338000 17770000 12462000 13476000 14442000 12530000 15201000 10082000 15510000 1082000 18299000 17440000 18023000 13009000 13890000 14633000 12276000 14640000 7 7 5 7 7 7 7 7 7 7 7 6308600 9660400 93611 10230000 14042000 14115000 8375400 8106300 8604500 7558100 8861600 5874600 9016300 718580 10454000 13327000 14005000 8798900 8528800 8752700 7404200 8540500 4 4 4 4 4 4 4 4 4 4 4 4519200 6955700 52.192 7809900 4295500 3654600 4086100 5369700 5837800 4971900 6338900 4207800 6493600 363410 7844900 4112900 4017900 4209900 5361100 5880100 4872200 6099400 3 3 1 3 3 3 3 3 3 3 3 934690000 600740000 333950000 17706 3252 16263 89889;89890;89891;89892;89893;89894 108673;108674;108675;108676;108677;108678;108679 108679 7 SPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVK 2 Oxidation (M) 3848.7994 0.79942134 2026 Q6UXN9 WDR82 WD repeat-containing protein 82 yes yes 0 0 2 1 By MS/MS 8 0 1 1 72.896 72.928 5 0.0010741 23504 20211116_3436_TMUAki_TMT10x_P_F8 51.544 38.299 1706500 2897500 34159 2792800 2086700 3668700 2216500 2092900 1841000 2014500 2220700 1589200 2703300 178640 2869600 2006200 3648000 2229900 2205100 1902800 1970700 2130500 1 1 1 1 1 1 1 1 1 1 1 1706500 2897500 34159 2792800 2086700 3668700 2216500 2092900 1841000 2014500 2220700 1589200 2703300 178640 2869600 2006200 3648000 2229900 2205100 1902800 1970700 2130500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 708560000 708560000 0 17707 2026 16264 89895 108680 108680 2555;2556 1 SPNRDFLTHVSAR Unmodified 1498.7641 0.76407383 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 1 By MS/MS 3 0 1 1 32.807 32.568 4 0.045925 10040 20211116_3441_TMUAki_TMT10x_S_F3 43.69 28.679 493790 752690 8931.4 767450 450800 438850 550760 504960 493510 458840 644670 459840 702390 48660 776970 435300 468820 551660 508690 509930 450020 617210 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 493790 752690 8931.4 767450 450800 438850 550760 504960 493510 458840 644670 459840 702390 48660 776970 435300 468820 551660 508690 509930 450020 617210 1 1 1 1 1 1 1 1 1 1 1 39744000 0 39744000 17708 157 16265 89896 108681 108681 1 SPPGQVTEAVK Unmodified 1111.5873 0.58733824 680 P15121 AKR1B1 Aldose reductase yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 36.452 36.614 2;3 2.2814E-05 8172 20211116_3444_TMUAki_TMT10x_S_F5 109.24 70.214 962860 1639500 13160 1578300 1054700 842550 1118900 1118700 1338100 987660 1342500 896580 1529600 88072 1603500 1013300 909930 1138400 1119500 1351800 970000 1294900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 962860 1639500 13160 1578300 1054700 842550 1118900 1118700 1338100 987660 1342500 896580 1529600 88072 1603500 1013300 909930 1138400 1119500 1351800 970000 1294900 2 2 1 2 2 2 2 2 2 2 2 66539000 0 66539000 17709 680 16266 89897;89898;89899 108682;108683;108684 108683 3 SPPHCELMAGHLR Oxidation (M) 1519.7024 0.70240155 2149 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein yes yes 0 0 1 0 By MS/MS 4.5 0.5 1 1 2 28.654 28.641 4 0.014848 5827 20211116_3431_TMUAki_TMT10x_P_F4 54.068 44.535 719020 1087600 8859.2 934110 851300 1111600 695400 619580 609730 618940 819580 669530 1014300 68350 966440 812790 1110400 710880 654760 631490 604520 784120 3 3 2 3 3 3 3 3 3 3 3 719020 1087600 8859.2 934110 851300 1111600 695400 619580 609730 618940 819580 669530 1014300 68350 966440 812790 1110400 710880 654760 631490 604520 784120 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 61253000 61253000 0 17710 2149 16267 89900;89901 108685;108686;108687 108686 2611 3 SPPHCELMAGHLR Unmodified 1503.7075 0.70748693 2149 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein yes yes 0 0 0 0 By MS/MS 5 0 1 1 31.799 31.739 4 0.021412 7436 20211116_3433_TMUAki_TMT10x_P_F5 51.135 38.969 595610 810760 22344 850560 920930 977980 633230 549190 483760 474000 684930 554740 756670 74761 866810 877150 978810 652730 577770 505820 466030 654500 1 1 1 1 1 1 1 1 1 1 1 595610 810760 22344 850560 920930 977980 633230 549190 483760 474000 684930 554740 756670 74761 866810 877150 978810 652730 577770 505820 466030 654500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14894000 14894000 0 17711 2149 16267 89902 108688 108688 1 SPPLIGSESAYESFLSADDK Unmodified 2111.9899 0.98989541 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.09 1.08 1 2 4 3 1 5 6 77.204 77.175 2;3 2.6458E-09 28096 20211116_3441_TMUAki_TMT10x_S_F3 113.86 98.012 58985000 96514000 835360 98616000 66729000 81699000 77151000 47436000 47628000 51457000 68375000 54921000 90066000 5012900 100200000 64246000 83503000 76799000 50079000 50482000 50090000 65317000 8 8 3 8 8 8 8 8 8 8 8 28427000 43941000 200820 45688000 30256000 48104000 36844000 23209000 21994000 23328000 31162000 26466000 41008000 2096100 46522000 29158000 48297000 36569000 24857000 23350000 22779000 29777000 4 4 1 4 4 4 4 4 4 4 4 30558000 52573000 634550 52928000 36473000 33596000 40307000 24227000 25634000 28128000 37214000 28455000 49058000 2916700 53682000 35088000 35207000 40230000 25222000 27131000 27311000 35540000 4 4 2 4 4 4 4 4 4 4 4 11062000000 6396400000 4665200000 17712 1057 16268 89903;89904;89905;89906;89907;89908;89909;89910;89911;89912;89913 108689;108690;108691;108692;108693;108694;108695;108696 108693 8 SPPLIGSESAYESFLSADDKASGR Unmodified 2483.1816 0.18161236 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 1 By MS/MS 6 0 1 1 69.524 69.439 3 4.5744E-29 21840 20211116_3445_TMUAki_TMT10x_S_F6 163.18 144.15 670450 1374100 34350 997130 1489300 1448200 1078100 2681600 1957700 1944000 1635700 624510 1280800 99067 1050600 1419800 1475200 1142300 2642200 1941700 1929000 1587900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 670450 1374100 34350 997130 1489300 1448200 1078100 2681600 1957700 1944000 1635700 624510 1280800 99067 1050600 1419800 1475200 1142300 2642200 1941700 1929000 1587900 1 1 1 1 1 1 1 1 1 1 1 445930000 0 445930000 17713 1057 16269 89914 108697 108697 1 SPPPGMGLNQNR Oxidation (M) 1282.6088 0.60881874 777 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 1 0 By MS/MS 4.67 0.471 1 2 3 28.691 28.659 2;3 8.988E-05 6187 20211116_3433_TMUAki_TMT10x_P_F5 100.57 75.625 265190 457930 5054.4 420460 656990 556090 314450 286130 333580 286780 366220 246950 427160 31154 433610 621580 552080 337470 304560 339690 280060 352270 3 3 2 3 3 3 3 3 3 3 3 265190 457930 5054.4 420460 656990 556090 314450 286130 333580 286780 366220 246950 427160 31154 433610 621580 552080 337470 304560 339690 280060 352270 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 45589000 45589000 0 17714 777 16270 89915;89916;89917 108698;108699;108700 108699 915 3 SPPREGSQGELTPANSQSR Unmodified 1996.9562 0.95624429 1592 Q13098;Q13098-5;Q13098-7 GPS1 COP9 signalosome complex subunit 1 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 28.167 28.055 3 5.306E-41 5525 20211116_3431_TMUAki_TMT10x_P_F4 209.9 188.14 187310 313890 392.3 295770 378530 240960 224150 164710 213140 141960 278440 174370 292830 13620 302190 358770 247140 235100 170630 219630 139580 266580 4 4 1 4 4 4 4 4 4 4 4 92899 161510 392.3 148020 265130 171670 105850 92909 115190 75475 139060 86496 150650 9825.6 152310 250200 171660 115980 97916 117630 74431 133410 2 2 1 2 2 2 2 2 2 2 2 94410 152380 0 147750 113400 69289 118310 71801 97950 66482 139380 87871 142170 3794.3 149890 108570 75483 119120 72716 102010 65149 133170 2 2 0 2 2 2 2 2 2 2 2 23613000 14185000 9427800 17715 1592 16271 89918;89919 108701;108702;108703;108704 108702 4 SPPSPVER Unmodified 867.44503 0.4450311 1501 Q02952;Q02952-3;Q02952-2 AKAP12 A-kinase anchor protein 12 yes no 0 0 0 0 By MS/MS 3 0 1 1 29.292 29.019 2 0.0099316 8676 20211116_3441_TMUAki_TMT10x_S_F3 81.191 40.922 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17716 1501 16272 89920 108705 108705 1 SPPSSSEIFTPAHEENVR Unmodified 1982.9334 0.93338358 27 C9JLW8 FAM195B Protein FAM195B yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 39.343 39.225 3 9.572E-24 10024 20211116_3431_TMUAki_TMT10x_P_F4 168.91 160.63 1874300 3137700 38301 3996600 2630100 2441500 1860700 2268900 2442000 2038800 2871300 1745400 2931000 201350 3993300 2504800 2579300 1945600 2308700 2474100 2000700 2756500 4 4 3 4 4 4 4 4 4 4 4 638230 860980 23541 1234100 1566400 1476500 939410 902410 876690 697440 964430 594430 804780 87853 1236200 1487600 1476300 983730 940350 897740 689600 927630 1 1 1 1 1 1 1 1 1 1 1 1236100 2276700 14761 2762500 1063700 965010 921270 1366500 1565300 1341400 1906800 1151000 2126200 113490 2757000 1017200 1103000 961870 1368300 1576400 1311100 1828900 3 3 2 3 3 3 3 3 3 3 3 316630000 220750000 95883000 17717 27 16273 89921;89922;89923 108706;108707;108708;108709;108710 108706 5 SPPTVLVICGPGNNGGDGLVCAR Unmodified 2309.1256 0.12563458 2234 Q8NCW5;Q8NCW5-2 APOA1BP NAD(P)H-hydrate epimerase yes no 0 0 0 0 By MS/MS 8 0 1 1 64.794 64.768 3 0.030471 19587 20211116_3447_TMUAki_TMT10x_S_F8 43.162 31.892 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17718 2234 16274 89924 108711 108711 1 SPPYIFSPIPFLGHAIAFGK Unmodified 2158.1615 0.16153303 1867 Q16850 CYP51A1 Lanosterol 14-alpha demethylase yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 3 2 1 80.026 80.062 3 5.117E-16 27849 20211116_3435_TMUAki_TMT10x_P_F7 129.32 114.06 16963000 27905000 109290 25675000 19128000 19536000 21963000 9991400 9556800 10983000 15586000 15794000 26030000 1390500 26259000 18409000 20066000 21746000 10670000 10479000 10686000 14848000 3 3 2 3 3 3 3 3 3 3 3 3239400 4856900 12236 4375100 2225800 4149800 2835600 2340100 2172300 2665900 3228700 3016300 4530200 265770 4494000 2150300 4200700 2823800 2480300 2276500 2590200 3081900 1 1 1 1 1 1 1 1 1 1 1 13723000 23048000 97054 21300000 16902000 15386000 19128000 7651300 7384500 8317000 12357000 12777000 21500000 1124700 21765000 16259000 15865000 18922000 8189600 8202800 8095400 11767000 2 2 1 2 2 2 2 2 2 2 2 1722300000 622380000 1099900000 17719 1867 16275 89925;89926;89927 108712;108713;108714;108715 108713 4 SPPYTAFLGNLPYDVTEESIK Unmodified 2340.1525 0.15254406 788 P23588;P23588-2 EIF4B Eukaryotic translation initiation factor 4B yes no 0 0 0 0 By matching By MS/MS 7.33 0.471 2 1 1 2 79.509 79.529 3 1.8856E-06 28100 20211116_3446_TMUAki_TMT10x_S_F7 82.36 67.105 10233000 15793000 163490 15418000 9960000 10140000 13670000 6174800 6180700 7624800 9985200 9528300 14735000 935020 15677000 9649300 10566000 13440000 6521600 6750500 7387000 9514600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10233000 15793000 163490 15418000 9960000 10140000 13670000 6174800 6180700 7624800 9985200 9528300 14735000 935020 15677000 9649300 10566000 13440000 6521600 6750500 7387000 9514600 2 2 1 2 2 2 2 2 2 2 2 3494800000 1127500000 2367300000 17720 788 16276 89928;89929;89930 108716;108717 108716 2 SPQELLCGASLISDR Unmodified 1644.8141 0.81412007 32 CON__P00735;P00734 F2 Prothrombin;Activation peptide fragment 1;Activation peptide fragment 2;Thrombin light chain;Thrombin heavy chain yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 1 3 68.608 68.532 2;3 6.0091E-05 21466 20211116_3445_TMUAki_TMT10x_S_F6 97.203 76.9 + 4044200 7139600 94001 7064300 4928600 5204700 5413900 6415800 6000100 6988500 6516600 3766200 6661700 435280 7184200 4743700 5444100 5484400 6479200 6096700 6801800 6270300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4044200 7139600 94001 7064300 4928600 5204700 5413900 6415800 6000100 6988500 6516600 3766200 6661700 435280 7184200 4743700 5444100 5484400 6479200 6096700 6801800 6270300 2 2 2 2 2 2 2 2 2 2 2 580550000 0 580550000 17721 32 16277 89931;89932;89933;89934 108718;108719;108720;108721 108720 4 SPQILVPTLFNLLSR Unmodified 1696.9876 0.98759141 2811 Q9H583 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 7.29 0.452 5 2 5 2 81.679 81.697 2;3 2.5439E-15 28963 20211116_3446_TMUAki_TMT10x_S_F7 159.93 131.92 3871500 6833000 69232 6889900 7924900 6027200 4146700 3827000 3747900 4076800 5083600 3604900 6376100 406560 7011900 7505700 6143900 4391400 4009500 3877700 3971300 4862600 6 6 3 6 6 6 6 6 6 6 6 2441100 4056700 59756 4146000 5102200 4558400 2341600 2359400 2431500 2633400 3069700 2273100 3785600 268710 4229500 4824800 4569000 2522300 2518000 2492300 2560700 2941500 4 4 2 4 4 4 4 4 4 4 4 1430400 2776300 9476.7 2743900 2822700 1468800 1805100 1467600 1316500 1443400 2013900 1331800 2590500 137850 2782400 2680900 1574900 1869100 1491500 1385400 1410700 1921100 2 2 1 2 2 2 2 2 2 2 2 973970000 548650000 425320000 17722 2811 16278 89935;89936;89937;89938;89939;89940;89941 108722;108723;108724;108725;108726;108727;108728;108729 108729 8 SPQNQYPAELMR Oxidation (M) 1448.6718 0.67181293 913 P33993;P33993-2 MCM7 DNA replication licensing factor MCM7 yes no 0 0 1 0 By MS/MS By MS/MS 4.25 0.968 2 3 2 1 4 4 35.155 35.237 2;3 0.00076311 8565 20211116_3431_TMUAki_TMT10x_P_F4 84.309 50.057 1651600 2523800 38411 3149900 3596700 3096000 2062200 1876200 2237400 1692900 2315300 1538000 2357300 191480 3168400 3412000 3129900 2177400 1963700 2271300 1660900 2231000 5 5 2 5 5 5 5 5 5 5 5 1255600 1852800 32293 2301500 3282400 2832000 1736500 1440400 1713600 1330300 1748200 1169300 1730500 157730 2324200 3110300 2821100 1841500 1531500 1745500 1303700 1685300 3 3 1 3 3 3 3 3 3 3 3 395970 670990 6117.8 848380 314270 263970 325670 435800 523820 362600 567080 368700 626770 33750 844220 301760 308820 335880 432230 525760 357150 545700 2 2 1 2 2 2 2 2 2 2 2 293730000 259820000 33908000 17723 913 16279 89942;89943;89944;89945;89946;89947;89948;89949 108730;108731;108732;108733 108731 1141 4 SPQNQYPAELMR Unmodified 1432.6769 0.67689831 913 P33993;P33993-2 MCM7 DNA replication licensing factor MCM7 yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 43.236 43.41 2 6.5923E-15 10871 20211116_3444_TMUAki_TMT10x_S_F5 158.94 124.05 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17724 913 16279 89950;89951 108734;108735 108735 2 SPQSLLQDMLATGGFLQGDEADCY Unmodified 2615.152 0.15196849 2010 Q6PJG6;Q6PJG6-3 BRAT1 BRCA1-associated ATM activator 1 yes no 0 0 0 0 By MS/MS 4 0 1 1 84.87 84.88 3 0.0055175 28684 20211116_3431_TMUAki_TMT10x_P_F4 44.632 29.863 159480 286060 7145.8 249950 153100 328140 187010 208380 192760 223960 235400 148550 266790 19793 258710 148090 326770 188090 218380 197360 218090 225760 1 1 1 1 1 1 1 1 1 1 1 159480 286060 7145.8 249950 153100 328140 187010 208380 192760 223960 235400 148550 266790 19793 258710 148090 326770 188090 218380 197360 218090 225760 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12713000 12713000 0 17725 2010 16280 89952 108736 108736 1 SPQSNSPVLLSR Unmodified 1283.6834 0.68336389 2465 Q96FZ2 HMCES Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein yes yes 0 0 0 0 By MS/MS 7 0 1 1 36.34 36.778 2 1.0459E-14 10068 20211116_3435_TMUAki_TMT10x_P_F7 153.34 111.46 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17726 2465 16281 89953 108737 108737 1 SPQVPAAQQMLNFPEK Oxidation (M) 1799.8876 0.88761936 2379 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 0 0 1 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 53.99 54.292 3 3.4039E-05 15124 20211116_3434_TMUAki_TMT10x_P_F6 84.874 67.173 6278000 10206000 69509 10504000 9329400 13186000 7408500 11209000 10872000 9362900 9258900 5845700 9524200 598830 10735000 8899500 13223000 7722400 11441000 10851000 9220300 8981600 3 3 2 3 3 3 3 3 3 3 3 4470500 6970500 33982 7203700 7610300 11588000 5995300 7657900 7261400 6252500 6135400 4162500 6505100 417100 7398000 7256700 11446000 6204900 7942300 7291900 6164400 5953400 2 2 1 2 2 2 2 2 2 2 2 1807500 3235300 35527 3300300 1719100 1597500 1413200 3551300 3610100 3110400 3123500 1683300 3019100 181730 3336800 1642800 1776400 1517500 3498900 3559300 3055900 3028200 1 1 1 1 1 1 1 1 1 1 1 1356000000 1068900000 287120000 17727 2379 16282 89954;89955;89956;89957 108738;108739;108740;108741 108738 2715 4 SPQVPAAQQMLNFPEK Unmodified 1783.8927 0.89270474 2379 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 0 0 0 0 By MS/MS 7 0 1 1 64.132 64.565 3 0.054233 21781 20211116_3446_TMUAki_TMT10x_S_F7 39.863 25.957 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17728 2379 16282 89958 108742 108742 1 SPRPTGSDLLPGAPILSLR Unmodified 1946.0949 0.094910023 2185 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein yes yes 0 0 0 1 By MS/MS 3 0 1 1 63.252 62.808 3 0.0065427 22372 20211116_3441_TMUAki_TMT10x_S_F3 55.588 40.616 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17729 2185 16283 89959 108743 108743 1 SPSAQLMEQVAQLK Unmodified 1528.7919 0.79192807 1694 Q14203;Q14203-6;Q14203-3;Q14203-4;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 By MS/MS 7 0 1 1 70.484 70.879 3 2.9286E-10 23933 20211116_3435_TMUAki_TMT10x_P_F7 121.76 91.277 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17730 1694 16284 89960 108744 108744 1 SPSDLSPESPMLSSPPK Oxidation (M) 1770.8346 0.83458074 3031 Q9NZ72;Q9NZ72-2 STMN3 Stathmin-3 yes no 0 0 1 0 By MS/MS 8 0 1 1 48.092 48 3 0.032587 12823 20211116_3447_TMUAki_TMT10x_S_F8 43.798 32.358 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17731 3031 16285 89961 108745 108745 3079 1 SPSDSGYSYETIGK Unmodified 1489.6573 0.6572683 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 46.531 46.656 3 0.0020437 13035 20211116_3431_TMUAki_TMT10x_P_F4 66.215 45.552 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17732 1057 16286 89962 108746 108746 1 SPSDSSTASTPVAEQIER Unmodified 1860.8701 0.87011462 1858 Q16643;Q16643-3;Q16643-2 DBN1 Drebrin yes no 0 0 0 0 By MS/MS By MS/MS 1.89 0.737 3 4 2 4 5 37.533 37.436 2;3 4.9931E-133 10567 20211116_3429_TMUAki_TMT10x_P_F2 379.4 350.34 1557300 2564800 31554 3783200 3993200 2879000 1920800 2302100 3249500 1694300 2972200 1450100 2397800 178970 3759900 3777800 2975800 2097900 2351500 3237800 1679800 2875800 10 10 4 10 10 10 10 10 10 10 10 606510 945840 4240.9 1454900 3145500 2093000 1041700 888710 1313500 651310 1185500 564710 884470 84479 1457800 2963100 2065800 1175100 957250 1319900 645880 1147600 3 3 1 3 3 3 3 3 3 3 3 950820 1618900 27314 2328300 847640 785970 879090 1413400 1936000 1043000 1786700 885440 1513300 94489 2302100 814660 909930 922770 1394300 1918000 1033900 1728200 7 7 3 7 7 7 7 7 7 7 7 782950000 484750000 298190000 17733 1858 16287 89963;89964;89965;89966;89967;89968;89969;89970;89971 108747;108748;108749;108750;108751;108752;108753;108754;108755;108756 108749 10 SPSGGAAGPLLTPSQSLDGSRR Unmodified 2110.0767 0.076693777 2430 Q96CX2 KCTD12 BTB/POZ domain-containing protein KCTD12 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 41.662 41.705 3 7.0067E-69 12690 20211116_3439_TMUAki_TMT10x_S_F1 255.98 235.03 1646100 2892300 8951.9 3442700 2988600 3410700 2134100 3324700 3453000 2634200 2839300 1532700 2700900 149300 3472800 2843800 3474600 2250200 3364000 3433400 2601100 2758000 5 5 2 5 5 5 5 5 5 5 5 1012000 1698000 2599.1 2076300 2516700 2940600 1720300 1983500 2029600 1533600 1786600 942240 1585900 99641 2104400 2392700 2920900 1796100 2051500 2042600 1516300 1731000 3 3 1 3 3 3 3 3 3 3 3 634120 1194300 6352.8 1366400 471950 470060 413810 1341100 1423400 1100600 1052700 590420 1115000 49656 1368400 451030 553720 454040 1312400 1390800 1084800 1027000 2 2 1 2 2 2 2 2 2 2 2 1578300000 1050800000 527460000 17734 2430 16288 89972;89973;89974;89975 108757;108758;108759;108760;108761 108760 5 SPSKPLPEVTDEYKNDVK Unmodified 2045.0317 0.031700644 509 P05455 SSB Lupus La protein yes yes 0 0 0 2 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 46.698 47.078 4 8.2925E-18 12242 20211116_3434_TMUAki_TMT10x_P_F6 157.85 140.49 10967000 15946000 69246 25405000 42069000 32785000 19064000 21893000 25311000 17909000 20185000 10212000 14914000 1407000 25360000 39764000 32699000 20734000 22690000 25294000 17655000 19630000 4 4 3 4 4 4 4 4 4 4 4 9081700 12882000 69246 20564000 40842000 31618000 18187000 17925000 20671000 14575000 16323000 8456500 12049000 1262300 20602000 38596000 31221000 19709000 18816000 20766000 14373000 15880000 3 3 3 3 3 3 3 3 3 3 3 1885200 3063600 0 4840900 1227500 1166700 877210 3967700 4639700 3333500 3862200 1755300 2865300 144730 4758000 1168000 1478100 1024600 3873800 4527900 3281800 3749800 1 1 0 1 1 1 1 1 1 1 1 2177200000 1840500000 336700000 17735 509 16289 89976;89977;89978 108762;108763;108764;108765 108762 4 SPSLSPSPPSPLEK Unmodified 1421.7402 0.74021007 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS 6 0 1 1 50.818 50.96 3 0.000839 14201 20211116_3445_TMUAki_TMT10x_S_F6 73.156 53.762 4017300 6592300 10381 7822800 4052600 3252300 3293100 6196200 6602800 6202500 5827300 3740500 6155900 330260 7825300 3866500 3661300 3482500 6151500 6544900 6057400 5645400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4017300 6592300 10381 7822800 4052600 3252300 3293100 6196200 6602800 6202500 5827300 3740500 6155900 330260 7825300 3866500 3661300 3482500 6151500 6544900 6057400 5645400 2 2 1 2 2 2 2 2 2 2 2 159450000 0 159450000 17736 1057 16290 89979 108766;108767 108766 2 SPSWYGIPR Unmodified 1061.5294 0.52942943 1428 P78347;P78347-2;P78347-4;P78347-3 GTF2I General transcription factor II-I yes no 0 0 0 0 By MS/MS 1 0 1 1 50.527 50.527 2 0.00036064 14235 20211116_3428_TMUAki_TMT10x_P_F1 91.318 60.754 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17737 1428 16291 89980 108768 108768 1 SPTAPSVFSPTGNR Unmodified 1416.6997 0.69974224 2800 Q9H3P2 NELFA Negative elongation factor A yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 4 2 2 42.167 42.297 2;3 5.6439E-37 10425 20211116_3447_TMUAki_TMT10x_S_F8 240.41 212.33 2712900 4213400 27246 4884100 4859100 4332600 3027600 4476400 4445400 3243800 4454800 2526100 3934100 268730 4926900 4614000 4451000 3210700 4507200 4460700 3218900 4297000 4 4 2 4 4 4 4 4 4 4 4 1451700 2133200 16395 2500700 3949400 3431900 2114400 2375600 2254800 1613400 2519500 1351700 1991800 161440 2539100 3741100 3415000 2245000 2445800 2297100 1607100 2422300 2 2 1 2 2 2 2 2 2 2 2 1261200 2080200 10851 2383400 909760 900650 913200 2100900 2190600 1630400 1935200 1174300 1942200 107290 2387800 872900 1035900 965670 2061400 2163600 1611700 1874700 2 2 1 2 2 2 2 2 2 2 2 235280000 142350000 92929000 17738 2800 16292 89981;89982;89983;89984 108769;108770;108771;108772 108772 4 SPTDWALFTYEGNSNDIR Unmodified 2084.9439 0.94394827 3142 Q9UJU6;Q9UJU6-2;Q9UJU6-3;Q9UJU6-6 DBNL Drebrin-like protein yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 76.076 76.038 3 4.7408E-07 24226 20211116_3444_TMUAki_TMT10x_S_F5 95.761 89.463 1440400 2770000 125310 2302500 1591500 3268400 1908100 1953300 1640600 1876900 1787100 1342100 2582900 238320 2396400 1541600 3240500 1910600 2050000 1685900 1836200 1719400 1 1 1 1 1 1 1 1 1 1 1 1440400 2770000 125310 2302500 1591500 3268400 1908100 1953300 1640600 1876900 1787100 1342100 2582900 238320 2396400 1541600 3240500 1910600 2050000 1685900 1836200 1719400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 347920000 347920000 0 17739 3142 16293 89985;89986 108773;108774 108774 2 SPTIPRAER Unmodified 1025.5618 0.56179219 3061 Q9P2B4 CTTNBP2NL CTTNBP2 N-terminal-like protein yes yes 0 0 0 1 By MS/MS 2 0 1 1 37.157 36.918 3 0.055578 10256 20211116_3429_TMUAki_TMT10x_P_F2 44.349 24.359 231840 287690 1865.2 421630 574580 435190 313270 265270 262540 222630 316310 215880 268950 25760 420870 544480 438680 329860 277010 271220 219180 303460 1 1 1 1 1 1 1 1 1 1 1 231840 287690 1865.2 421630 574580 435190 313270 265270 262540 222630 316310 215880 268950 25760 420870 544480 438680 329860 277010 271220 219180 303460 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 73241000 73241000 0 17740 3061 16294 89987 108775 108775 1 SPTLYGISHDDLKGDPLLDQR Unmodified 2339.1757 0.17573912 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 1 By MS/MS 7 0 1 1 57.625 58.358 4 0.00012955 18700 20211116_3435_TMUAki_TMT10x_P_F7 65.184 50.414 12550000 22049000 345460 23761000 20646000 32804000 18622000 16169000 14731000 15128000 17124000 11688000 20580000 1475800 24254000 19767000 32487000 18875000 17248000 15242000 14818000 16445000 2 2 2 2 2 2 2 2 2 2 2 12550000 22049000 345460 23761000 20646000 32804000 18622000 16169000 14731000 15128000 17124000 11688000 20580000 1475800 24254000 19767000 32487000 18875000 17248000 15242000 14818000 16445000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 660850000 660850000 0 17741 352 16295 89988 108776;108777 108777 2 SPTPPLFSLPEAR Unmodified 1410.7507 0.75071518 2462 Q96FV9;Q96FV9-2 THOC1 THO complex subunit 1 yes no 0 0 0 0 By MS/MS 7 0 1 1 63.828 64.471 2 8.1613E-09 21200 20211116_3435_TMUAki_TMT10x_P_F7 126.19 96.384 3450900 5489300 134570 5376000 3727700 7195400 4444400 4051600 3824300 4318800 4722900 3214100 5121600 415390 5519700 3600500 7147400 4451500 4286100 3949600 4207000 4528200 1 1 1 1 1 1 1 1 1 1 1 3450900 5489300 134570 5376000 3727700 7195400 4444400 4051600 3824300 4318800 4722900 3214100 5121600 415390 5519700 3600500 7147400 4451500 4286100 3949600 4207000 4528200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 371450000 371450000 0 17742 2462 16296 89989 108778 108778 1 SPTWFGIPR Unmodified 1059.5502 0.55016488 1428 P78347;P78347-2;P78347-4;P78347-3 GTF2I General transcription factor II-I yes no 0 0 0 0 By MS/MS 3 0 1 1 61.459 61.185 2 0.006097 20648 20211116_3430_TMUAki_TMT10x_P_F3 71.379 52.597 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17743 1428 16297 89990 108779 108779 1 SPVISRPK Unmodified 882.5287 0.52870115 2209 Q8N8S7-3;Q8N8S7-2 ENAH Protein enabled homolog yes no 0 0 0 1 By MS/MS By matching 1.33 0.471 2 1 2 1 30.155 30.188 3 0.030279 7637 20211116_3429_TMUAki_TMT10x_P_F2 61.65 33.908 295590 498950 20320 414480 438560 594080 399150 271480 302030 289330 364090 275380 465250 45446 431490 420750 586880 403930 292840 313710 281840 349310 1 1 1 1 1 1 1 1 1 1 1 295590 498950 20320 414480 438560 594080 399150 271480 302030 289330 364090 275380 465250 45446 431490 420750 586880 403930 292840 313710 281840 349310 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16256000 6012600 10243000 17744 2209 16298 89991;89992;89993 108780;108781 108781 2 SPVSPLAAQGIPLPAQLTK Unmodified 1887.0829 0.082948354 2555 Q96SI1;Q96SI1-2 KCTD15 BTB/POZ domain-containing protein KCTD15 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 76.112 75.985 3 2.0748E-08 26619 20211116_3430_TMUAki_TMT10x_P_F3 105.77 93.414 6260000 10187000 117530 8598600 7749200 8534000 7846300 6871200 6243400 6422100 8301700 5829600 9499300 649390 8883200 7439800 8660500 7904200 7056700 6494700 6290700 7944600 3 3 3 3 3 3 3 3 3 3 3 2219600 3411800 43038 2759000 1985600 3890700 2307800 2145700 2104600 2203000 2932100 2067000 3181200 220850 2877700 1914600 3854600 2317700 2271400 2179300 2149200 2802800 1 1 1 1 1 1 1 1 1 1 1 4040400 6774900 74496 5839500 5763600 4643300 5538500 4725600 4138800 4219200 5369600 3762600 6318200 428540 6005500 5525300 4805900 5586400 4785300 4315400 4141500 5141800 2 2 2 2 2 2 2 2 2 2 2 550820000 306780000 244040000 17745 2555 16299 89994;89995 108782;108783;108784 108782 3 SPVTLLR Unmodified 784.48069 0.48068833 3322 Q9Y5L0;Q9Y5L0-3;Q9Y5L0-1;Q9Y5L0-5 TNPO3 Transportin-3 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 44 43.894 2 0.0065775 11566 20211116_3428_TMUAki_TMT10x_P_F1 102.77 19.486 3244800 5104300 44624 5176900 4960300 5348700 3694100 3910000 4349400 3729900 4458200 3021600 4763100 334630 5278700 4727100 5405900 3833600 4042600 4399900 3650200 4297200 2 2 2 2 2 2 2 2 2 2 2 1990800 3029800 19650 3098700 3661900 4180200 2389600 2394900 2761300 2261800 2621300 1853800 2827400 206770 3172500 3480400 4151700 2501900 2521100 2788000 2214500 2533000 1 1 1 1 1 1 1 1 1 1 1 1254000 2074500 24975 2078100 1298400 1168500 1304500 1515100 1588000 1468100 1836800 1167800 1935800 127860 2106200 1246600 1254300 1331700 1521600 1612000 1435800 1764200 1 1 1 1 1 1 1 1 1 1 1 139370000 88796000 50576000 17746 3322 16300 89996;89997;89998;89999 108785;108786;108787;108788 108785 4 SPVTTLLECMHK Unmodified 1414.6949 0.69485656 1242 P55265;P55265-5;P55265-4;P55265-3;P55265-2 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 0 0 By MS/MS By MS/MS 8 0 3 1 2 63.81 63.992 3 4.9817E-16 19305 20211116_3447_TMUAki_TMT10x_S_F8 173.11 137.37 8543400 13336000 249720 14764000 11375000 13222000 10632000 5572000 4071300 5708300 9107100 7956600 12450000 980700 14938000 10904000 13393000 10620000 6055400 4607600 5569400 8629400 2 2 2 2 2 2 2 2 2 2 2 8543400 13336000 249720 14764000 11375000 13222000 10632000 5572000 4071300 5708300 9107100 7956600 12450000 980700 14938000 10904000 13393000 10620000 6055400 4607600 5569400 8629400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 687820000 687820000 0 17747 1242 16301 90000;90001;90002 108789;108790;108791;108792 108791 4 SPVTTLLECMHK Oxidation (M) 1430.6898 0.68977118 1242 P55265;P55265-5;P55265-4;P55265-3;P55265-2 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 1 0 By MS/MS 7 0 1 1 49.414 49.896 3 0.0024884 15795 20211116_3446_TMUAki_TMT10x_S_F7 64.266 37.668 8759200 15378000 166030 15454000 8826100 8666700 7863100 13543000 12787000 12059000 12805000 8156900 14349000 881860 15659000 8448700 9357300 8178700 13479000 12794000 11838000 12352000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8759200 15378000 166030 15454000 8826100 8666700 7863100 13543000 12787000 12059000 12805000 8156900 14349000 881860 15659000 8448700 9357300 8178700 13479000 12794000 11838000 12352000 3 3 3 3 3 3 3 3 3 3 3 333140000 0 333140000 17748 1242 16301 90003 108793;108794;108795 108793 1689 3 SPWSNKYDPPLEDGAMPSAR Unmodified 2217.0161 0.016067355 1063 P47756-2;P47756 CAPZB F-actin-capping protein subunit beta yes no 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 55.385 55.691 3 0.00015439 15769 20211116_3434_TMUAki_TMT10x_P_F6 64.422 58.612 11052000 17407000 56441 21398000 14104000 11302000 14864000 4182300 3442800 4424000 10919000 10291000 16257000 985980 21397000 13544000 11977000 14684000 4618800 4267600 4310800 10302000 3 3 2 3 3 3 3 3 3 3 3 7235100 11399000 56441 14503000 10804000 9394000 11771000 2473200 2077200 2779300 7360100 6737100 10648000 702420 14499000 10387000 9729500 11589000 2873100 2724900 2701800 6936500 2 2 2 2 2 2 2 2 2 2 2 3816900 6007500 0 6895300 3300200 1908200 3093700 1709100 1365600 1644700 3558800 3553700 5609000 283560 6897100 3157600 2247100 3095400 1745800 1542700 1609000 3365200 1 1 0 1 1 1 1 1 1 1 1 1633000000 923420000 709590000 17749 1063 16302 90004;90005 108796;108797;108798 108797 3 SPYLYPLYGLGELPQGFAR Unmodified 2140.0993 0.099326699 1133;884 P50395;P50395-2;P31150 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha no no 0 0 0 0 By MS/MS By MS/MS 3.05 1.35 3 13 35 5 1 3 31 29 62.421 62.365 2;3 7.4588E-58 27670 20211116_3429_TMUAki_TMT10x_P_F2 245.72 224.69 216620000 353750000 645440 345600000 254420000 291000000 274000000 159840000 178160000 190630000 249250000 201690000 330050000 12119000 352330000 244400000 296870000 273940000 170050000 187960000 184910000 238240000 85 85 41 85 85 85 85 85 85 85 85 98877000 158580000 291370 152780000 88036000 161130000 109070000 74985000 84760000 86136000 110650000 92061000 147950000 5702400 156390000 84921000 161700000 108780000 80921000 88211000 83665000 105940000 50 50 19 50 50 50 50 50 50 50 50 117740000 195160000 354070 192820000 166390000 129870000 164930000 84852000 93400000 104500000 138590000 109630000 182100000 6416200 195930000 159480000 135170000 165160000 89131000 99752000 101250000 132300000 35 35 22 35 35 35 35 35 35 35 35 147850000000 69000000000 78852000000 17750 1133;884 16303 90006;90007;90008;90009;90010;90011;90012;90013;90014;90015;90016;90017;90018;90019;90020;90021;90022;90023;90024;90025;90026;90027;90028;90029;90030;90031;90032;90033;90034;90035;90036;90037;90038;90039;90040;90041;90042;90043;90044;90045;90046;90047;90048;90049;90050;90051;90052;90053;90054;90055;90056;90057;90058;90059;90060;90061;90062;90063;90064;90065 108799;108800;108801;108802;108803;108804;108805;108806;108807;108808;108809;108810;108811;108812;108813;108814;108815;108816;108817;108818;108819;108820;108821;108822;108823;108824;108825;108826;108827;108828;108829;108830;108831;108832;108833;108834;108835;108836;108837;108838;108839;108840;108841;108842;108843;108844;108845;108846;108847;108848;108849;108850;108851;108852;108853;108854;108855;108856;108857;108858;108859;108860;108861;108862;108863;108864;108865;108866;108867;108868;108869;108870;108871;108872;108873;108874;108875;108876;108877;108878;108879;108880;108881;108882;108883;108884;108885;108886;108887;108888;108889;108890;108891 108805 93 SPYQEFTDHLVK Unmodified 1462.7092 0.70924429 687 P15880 RPS2 40S ribosomal protein S2 yes yes 0 0 0 0 By MS/MS By MS/MS 6.11 1.29 1 1 3 5 6 2 8 10 43.866 43.994 2;3 6.6514E-15 15935 20211116_3445_TMUAki_TMT10x_S_F6 182.35 153.6 208190000 343580000 1824700 368450000 289180000 356230000 235900000 259470000 256500000 245290000 264690000 193850000 320690000 17510000 373940000 275980000 361490000 242700000 268270000 260340000 240150000 255090000 29 29 17 29 29 29 29 29 29 29 29 139110000 224290000 1082400 240220000 223170000 299810000 182450000 169330000 170490000 163050000 172370000 129520000 209340000 11533000 244830000 212980000 298810000 186820000 178560000 174030000 159500000 166220000 16 16 8 16 16 16 16 16 16 16 16 69083000 119290000 742320 128240000 66015000 56429000 53450000 90139000 86013000 82239000 92329000 64326000 111350000 5977000 129120000 63002000 62673000 55881000 89709000 86303000 80645000 88871000 13 13 9 13 13 13 13 13 13 13 13 44887000000 25325000000 19562000000 17751 687 16304 90066;90067;90068;90069;90070;90071;90072;90073;90074;90075;90076;90077;90078;90079;90080;90081;90082;90083 108892;108893;108894;108895;108896;108897;108898;108899;108900;108901;108902;108903;108904;108905;108906;108907;108908;108909;108910;108911;108912;108913;108914;108915;108916;108917;108918;108919;108920;108921 108914 30 SPYTVTVGQACNPSACR Unmodified 1866.8353 0.83526622 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 40.581 40.878 3 2.5692E-31 10390 20211116_3436_TMUAki_TMT10x_P_F8 199.15 182.21 2250400 3607800 27526 4084200 4877500 4969200 2910800 3865500 4045200 3304800 3487700 2095300 3368200 194530 4146100 4627200 4982900 3090500 3969100 4045900 3250700 3381700 6 6 3 6 6 6 6 6 6 6 6 1664800 2704900 16867 3139400 4444200 4488300 2636800 2901000 2885400 2484100 2661700 1550000 2525600 164730 3192200 4215000 4453500 2776800 3017200 2916600 2443200 2574600 4 4 2 4 4 4 4 4 4 4 4 585620 902840 10659 944820 433340 480910 273990 964480 1159900 820690 825970 545350 842600 29799 953970 412140 529400 313680 951910 1129300 807450 807120 2 2 1 2 2 2 2 2 2 2 2 749670000 502830000 246840000 17752 755 16305 90084;90085;90086 108922;108923;108924;108925;108926;108927 108925 6 SQACGGNLGSIEELR Unmodified 1589.7468 0.74676879 3348 Q9Y6E0;Q9Y6E0-2 STK24 Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit yes no 0 0 0 0 By MS/MS 4 0 1 1 46.001 46.203 2 9.8534E-20 13234 20211116_3442_TMUAki_TMT10x_S_F4 147.1 113.01 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17753 3348 16306 90087 108928 108928 1 SQAEFEKAAEEVR Acetyl (Protein N-term) 1534.7264 0.72635092 530 P07108;P07108-6 DBI Acyl-CoA-binding protein yes no 1 0 0 1 By MS/MS 1 0 1 1 52.578 52.297 2 5.5612E-10 17078 20211116_3439_TMUAki_TMT10x_S_F1 57.885 36.853 432010 788380 32307 939790 501760 631720 309310 1610800 1871700 1145900 989790 402490 736210 66903 943440 478230 684550 372180 1574400 1804500 1138300 982110 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 432010 788380 32307 939790 501760 631720 309310 1610800 1871700 1145900 989790 402490 736210 66903 943440 478230 684550 372180 1574400 1804500 1138300 982110 1 1 1 1 1 1 1 1 1 1 1 241270000 0 241270000 17754 530 16307 90088 108929 108929 1 SQAFIEMETR Oxidation (M) 1226.5601 0.56013721 1026 P43243;P43243-2 MATR3 Matrin-3 yes no 0 0 1 0 By MS/MS By MS/MS 2.67 1.15 2 2 2 3 4 5 37.144 37.124 2 0.00014862 11957 20211116_3441_TMUAki_TMT10x_S_F3 122.77 102.25 4695200 6945100 428.14 8413900 7846300 6341000 5084300 4014800 4670900 3818800 5821300 4371100 6486000 359970 8448800 7449200 6535300 5288800 4193500 4810800 3737700 5579900 9 9 1 9 9 9 9 9 9 9 9 2814500 3937700 0 4901100 6232500 4863300 3177100 2200700 2616700 2095900 3292700 2620200 3677900 227570 4931300 5895700 4896900 3365100 2368800 2710600 2051300 3155400 4 4 0 4 4 4 4 4 4 4 4 1880700 3007400 428.14 3512800 1613800 1477700 1907200 1814100 2054200 1722900 2528600 1751000 2808100 132410 3517500 1553500 1638500 1923700 1824800 2100200 1686400 2424500 5 5 1 5 5 5 5 5 5 5 5 770920000 471980000 298940000 17755 1026 16308 90089;90090;90091;90092;90093;90094;90095;90096;90097 108930;108931;108932;108933;108934;108935;108936;108937;108938 108936 1326 9 SQAFIEMETR Unmodified 1210.5652 0.56522259 1026 P43243;P43243-2 MATR3 Matrin-3 yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 46.45 46.388 2 2.7603E-15 13225 20211116_3442_TMUAki_TMT10x_S_F4 237.52 199.35 23612000 33197000 30079 43914000 34196000 28214000 25223000 15356000 14207000 14981000 26239000 21985000 31017000 1992700 43808000 32556000 29422000 25713000 16251000 15362000 14647000 24939000 7 7 2 7 7 7 7 7 7 7 7 15592000 20900000 22021 28498000 28449000 23520000 18211000 10376000 9652300 9996100 17353000 14517000 19530000 1377100 28461000 27014000 23972000 18742000 11201000 10467000 9778300 16502000 4 4 1 4 4 4 4 4 4 4 4 8020000 12298000 8057.6 15417000 5747400 4694800 7012200 4980900 4555100 4985300 8885700 7467300 11487000 615500 15347000 5541500 5450500 6970600 5049900 4895200 4868700 8437600 3 3 1 3 3 3 3 3 3 3 3 2908900000 1538500000 1370400000 17756 1026 16308 90098;90099;90100;90101;90102;90103 108939;108940;108941;108942;108943;108944;108945 108945 7 SQALLERDGLAEEVQR Unmodified 1812.933 0.93298965 1842 Q16352 INA Alpha-internexin yes yes 0 0 0 1 By MS/MS By matching 3 0 2 1 1 43.553 43.409 3 0.017427 13264 20211116_3430_TMUAki_TMT10x_P_F3 47.726 33.98 648720 996970 11936 1025100 1254800 1412500 796800 723290 790200 709990 862790 604110 930390 73396 1049600 1192400 1399600 831970 769780 806760 693960 830050 1 1 1 1 1 1 1 1 1 1 1 648720 996970 11936 1025100 1254800 1412500 796800 723290 790200 709990 862790 604110 930390 73396 1049600 1192400 1399600 831970 769780 806760 693960 830050 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 63270000 35236000 28034000 17757 1842 16309 90104;90105 108946 108946 1 SQAPLESSLDSLGDVFLDSGRK Unmodified 2320.1547 0.15466933 1741 Q14980;Q14980-2;Q14980-5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 4.78 1.31 2 2 2 2 1 4 5 77.963 77.944 3 2.6086E-68 26250 20211116_3442_TMUAki_TMT10x_S_F4 251.55 224.23 99702000 169160000 1081200 144150000 116190000 172000000 133140000 110190000 106660000 120400000 129390000 92838000 157750000 9241100 149240000 111880000 172110000 133340000 115460000 110480000 117170000 124110000 14 14 11 14 14 14 14 14 14 14 14 65267000 109880000 744590 91974000 64759000 127860000 83687000 70778000 67472000 79700000 82687000 60775000 102470000 5976900 95630000 62607000 126750000 83396000 75110000 69891000 77472000 79294000 8 8 6 8 8 8 8 8 8 8 8 34434000 59275000 336580 52180000 51428000 44142000 49451000 39411000 39190000 40698000 46700000 32063000 55284000 3264100 53614000 49273000 45359000 49946000 40347000 40584000 39695000 44818000 6 6 5 6 6 6 6 6 6 6 6 10747000000 4593900000 6152700000 17758 1741 16310 90106;90107;90108;90109;90110;90111;90112;90113;90114 108947;108948;108949;108950;108951;108952;108953;108954;108955;108956;108957;108958;108959;108960 108956 14 SQASGNQPPSILGQGGSAQNMGPRPGAPSQGLFGQPSSR Oxidation (M) 3820.8299 0.82994492 2865 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 yes yes 0 0 1 1 By matching By MS/MS 3 0 2 1 1 50.599 50.367 4 3.6099E-33 17263 20211116_3441_TMUAki_TMT10x_S_F3 150.06 138.68 713980 1323900 3584.8 1648200 621860 563610 521750 1139300 1321100 948680 1135200 664760 1236600 54598 1642300 593530 654010 559210 1123600 1302400 934380 1100800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 713980 1323900 3584.8 1648200 621860 563610 521750 1139300 1321100 948680 1135200 664760 1236600 54598 1642300 593530 654010 559210 1123600 1302400 934380 1100800 2 2 1 2 2 2 2 2 2 2 2 1099200000 535140000 564100000 17759 2865 16311 90115;90116 108961;108962 108961 2993 2 SQASTTVDINTQVEK Unmodified 1619.8002 0.80024414 1720 Q14676;Q14676-2;Q14676-3;Q14676-4 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 0 0 By MS/MS 4 0 1 1 42.438 42.525 3 1.956E-14 11370 20211116_3431_TMUAki_TMT10x_P_F4 130.21 106.88 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17760 1720 16312 90117 108963 108963 1 SQAVADSSFTKEESK Unmodified 1612.758 0.75804498 2330 Q8WZ42-9;Q8WZ42-7;Q8WZ42-12 TTN Titin yes no 0 0 0 1 By MS/MS 8 0 1 1 52.726 52.634 3 0.073229 14716 20211116_3447_TMUAki_TMT10x_S_F8 36.392 19.898 1079600 1962500 37632 1965800 1376200 1174000 1121800 1813200 2281700 1766600 1926400 1005500 1831200 128730 1993300 1315400 1259200 1187100 1809800 2257900 1727200 1869300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1079600 1962500 37632 1965800 1376200 1174000 1121800 1813200 2281700 1766600 1926400 1005500 1831200 128730 1993300 1315400 1259200 1187100 1809800 2257900 1727200 1869300 1 1 1 1 1 1 1 1 1 1 1 396540000 0 396540000 17761 2330 16313 90118 108964 108964 1 SQAVEKPPSEKPR Unmodified 1451.7732 0.77324153 2098 Q7Z7K6-3;Q7Z7K6 CENPV Centromere protein V yes no 0 0 0 2 By MS/MS 5 0 1 1 29.74 29.672 4 0.00028935 6585 20211116_3433_TMUAki_TMT10x_P_F5 87.138 71 229750 374450 5254.7 335200 321660 409690 279340 205860 212090 194880 298440 213960 349260 25233 345840 307680 408190 283480 219260 221770 190780 285220 1 1 1 1 1 1 1 1 1 1 1 229750 374450 5254.7 335200 321660 409690 279340 205860 212090 194880 298440 213960 349260 25233 345840 307680 408190 283480 219260 221770 190780 285220 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25173000 25173000 0 17762 2098 16314 90119 108965 108965 1 SQCISHTALVLQGSLTQPR Unmodified 2095.0844 0.084421691 405 O95155;O95155-2;O95155-4;O95155-3 UBE4B Ubiquitin conjugation factor E4 B yes no 0 0 0 0 By matching By MS/MS 3 0 2 1 1 51.335 51.104 3 5.8324E-19 17554 20211116_3441_TMUAki_TMT10x_S_F3 159.75 145.29 771390 1345200 29727 1463400 589370 614860 548250 859070 861550 841340 989520 718460 1255700 89109 1471900 565880 684210 567960 860590 867310 822430 950590 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 771390 1345200 29727 1463400 589370 614860 548250 859070 861550 841340 989520 718460 1255700 89109 1471900 565880 684210 567960 860590 867310 822430 950590 1 1 1 1 1 1 1 1 1 1 1 312400000 161610000 150790000 17763 405 16315 90120;90121 108966 108966 1 SQDAEVGDGTTSVTLLAAEFLK Unmodified 2251.122 0.12197221 2609 Q99832;Q99832-3 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 By MS/MS By MS/MS 3.11 1.54 6 8 10 6 4 2 1 17 20 74.15 74.131 2;3;4 1.8825E-91 29488 20211116_3441_TMUAki_TMT10x_S_F3 299.65 273.11 121670000 205380000 522160 184990000 137150000 177100000 154240000 98486000 100840000 121200000 143060000 113290000 191560000 8204500 190040000 131910000 179140000 153900000 104780000 106420000 117440000 136700000 34 34 12 34 34 34 34 34 34 34 34 71330000 116580000 323450 102770000 70040000 121310000 79762000 57645000 57871000 66897000 80666000 66415000 108730000 5014400 106100000 67398000 121010000 79720000 62099000 60641000 64954000 77110000 17 17 7 17 17 17 17 17 17 17 17 50345000 88801000 198710 82215000 67106000 55796000 74478000 40841000 42964000 54306000 62398000 46874000 82836000 3190100 83943000 64511000 58135000 74185000 42682000 45777000 52484000 59592000 17 17 5 17 17 17 17 17 17 17 17 69676000000 37601000000 32075000000 17764 2609 16316 90122;90123;90124;90125;90126;90127;90128;90129;90130;90131;90132;90133;90134;90135;90136;90137;90138;90139;90140;90141;90142;90143;90144;90145;90146;90147;90148;90149;90150;90151;90152;90153;90154;90155;90156;90157;90158 108967;108968;108969;108970;108971;108972;108973;108974;108975;108976;108977;108978;108979;108980;108981;108982;108983;108984;108985;108986;108987;108988;108989;108990;108991;108992;108993;108994;108995;108996;108997;108998;108999;109000;109001;109002;109003;109004;109005;109006 108997 40 SQDGDTAACSLIQAR Unmodified 1591.726 0.72603334 2190 Q8N201 INTS1 Integrator complex subunit 1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 39.947 40 3 0.010174 11958 20211116_3430_TMUAki_TMT10x_P_F3 52.93 38.772 177140 256420 0 314220 394520 391480 236740 230800 271340 195630 231850 164930 239480 17066 317630 374280 390440 249450 241720 273130 192510 224880 1 1 0 1 1 1 1 1 1 1 1 177140 256420 0 314220 394520 391480 236740 230800 271340 195630 231850 164930 239480 17066 317630 374280 390440 249450 241720 273130 192510 224880 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10460000 10460000 0 17765 2190 16317 90159 109007 109007 1 SQEATEAAPSCVGDMADTPR Oxidation (M) 2107.8786 0.87864717 3118 Q9UHD8-5;Q9UHD8;Q9UHD8-2;Q9UHD8-7;Q9UHD8-3 SEPT9 Septin-9 yes no 0 0 1 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 33.635 33.588 3 1.4085E-07 7637 20211116_3440_TMUAki_TMT10x_S_F2 100.28 93.391 148210 271510 126.39 472600 552430 375750 271760 219420 290770 177760 294950 137980 254100 14597 466480 522420 385250 290920 229740 295120 175330 284400 2 2 1 2 2 2 2 2 2 2 2 131050 235550 0 424900 534260 367210 253580 175490 230740 151470 249850 121990 220500 13041 419230 505000 373340 271190 187380 236420 148930 240430 1 1 0 1 1 1 1 1 1 1 1 17169 35964 126.39 47701 18166 8535.7 18180 43934 60023 26290 45103 15987 33602 1555.2 47248 17426 11907 19735 42354 58703 26403 43971 1 1 1 1 1 1 1 1 1 1 1 87136000 82993000 4142700 17766 3118 16318 90160;90161;90162 109008;109009 109009 3143 2 SQEEPKDTFEHDPSESIDEFNK Unmodified 2607.1249 0.12488534 3018 Q9NYF8;Q9NYF8-2;Q9NYF8-4;Q9NYF8-3 BCLAF1 Bcl-2-associated transcription factor 1 yes no 0 0 0 1 By MS/MS By MS/MS 2.8 0.748 2 2 1 2 3 50.316 50.178 4 2.2611E-55 15601 20211116_3429_TMUAki_TMT10x_P_F2 222.72 210.98 14472000 23628000 83507 30212000 19206000 25371000 13304000 20304000 21272000 18135000 20154000 13475000 22072000 1312700 30283000 18270000 26031000 14050000 20835000 21252000 17801000 19477000 6 6 5 6 6 6 6 6 6 6 6 6898800 10915000 49128 13990000 14744000 20248000 10233000 9553400 10297000 9129800 9343400 6423900 10196000 727620 14149000 14026000 20001000 10617000 10240000 10438000 8934100 9042800 3 3 3 3 3 3 3 3 3 3 3 7572900 12713000 34379 16221000 4461900 5123300 3071700 10751000 10975000 9005600 10811000 7051100 11876000 585080 16135000 4243400 6030300 3433100 10595000 10814000 8867200 10434000 3 3 2 3 3 3 3 3 3 3 3 3483600000 1959300000 1524400000 17767 3018 16319 90163;90164;90165;90166;90167 109010;109011;109012;109013;109014;109015 109010 6 SQEGDSISVIGR Unmodified 1246.6153 0.61534391 375 O75976;O75976-2 CPD Carboxypeptidase D yes no 0 0 0 0 By MS/MS 2 0 1 1 37.508 37.606 2 4.7855E-16 9180 20211116_3440_TMUAki_TMT10x_S_F2 198.81 163.99 178580 252420 2290 334700 161240 140210 172130 185740 207370 172260 254860 166290 235840 16697 332730 155020 155850 175120 186140 211110 168790 244380 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 178580 252420 2290 334700 161240 140210 172130 185740 207370 172260 254860 166290 235840 16697 332730 155020 155850 175120 186140 211110 168790 244380 1 1 1 1 1 1 1 1 1 1 1 11432000 0 11432000 17768 375 16320 90168 109016 109016 1 SQEGRPVQVIGALIGK Unmodified 1650.9417 0.94170385 2062 Q7L5N1 COPS6 COP9 signalosome complex subunit 6 yes yes 0 0 0 1 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 61.914 61.649 3 8.1311E-06 20822 20211116_3439_TMUAki_TMT10x_S_F1 99.392 68.954 93264000 154100000 0 144900000 126100000 133700000 92938000 97858000 98351000 93085000 115200000 86821000 143760000 6042200 148310000 119940000 136090000 96173000 101160000 100420000 91108000 110610000 4 4 0 4 4 4 4 4 4 4 4 50551000 81943000 0 75986000 83316000 96730000 53346000 51690000 54168000 48385000 61559000 47055000 76439000 3030800 78249000 79029000 96250000 55704000 54729000 55333000 47391000 59155000 1 1 0 1 1 1 1 1 1 1 1 42713000 72155000 0 68918000 42786000 36967000 39592000 46168000 44183000 44700000 53645000 39765000 67316000 3011400 70058000 40911000 39837000 40469000 46432000 45084000 43717000 51457000 3 3 0 3 3 3 3 3 3 3 3 2405000000 1078400000 1326600000 17769 2062 16321 90169;90170;90171 109017;109018;109019;109020 109018 4 SQEPLPDDDEEFELPEFVEPFLK Unmodified 2748.2694 0.26942431 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 4 2 2 2 6 82.374 82.359 3;4 3.8461E-16 28907 20211116_3439_TMUAki_TMT10x_S_F1 138.35 127.51 29977000 47192000 99983 45135000 31854000 38587000 35620000 21749000 21760000 28967000 32726000 27909000 44028000 2083400 46093000 30610000 39335000 35505000 23179000 23133000 27994000 31230000 9 9 5 9 9 9 9 9 9 9 9 16941000 27017000 33469 24551000 15734000 26687000 18679000 12681000 12229000 17484000 17956000 15770000 25201000 925680 25252000 15130000 26741000 18593000 13744000 12926000 16878000 17144000 4 4 2 4 4 4 4 4 4 4 4 13036000 20175000 66514 20584000 16120000 11900000 16941000 9068700 9531800 11484000 14770000 12138000 18827000 1157700 20840000 15479000 12595000 16911000 9435600 10207000 11116000 14086000 5 5 3 5 5 5 5 5 5 5 5 9889500000 6510300000 3379200000 17770 1997 16322 90172;90173;90174;90175;90176;90177;90178;90179 109021;109022;109023;109024;109025;109026;109027;109028;109029 109027 9 SQEQILEILR Unmodified 1227.6823 0.68230126 641 P12270 TPR Nucleoprotein TPR yes yes 0 0 0 0 By MS/MS 5 0 1 1 64.203 64.26 2 0.0034647 19376 20211116_3444_TMUAki_TMT10x_S_F5 76.068 41.756 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17771 641 16323 90180 109030 109030 1 SQEQLAAELAEYTAK Unmodified 1650.8101 0.81008055 682 P15311 EZR Ezrin yes yes 0 0 0 0 By MS/MS By MS/MS 4 1.35 2 2 3 2 2 5 6 71.519 71.396 2;3 1.9009E-19 23586 20211116_3442_TMUAki_TMT10x_S_F4 165.93 142.69 69372000 114260000 629400 111250000 79414000 106270000 81100000 73761000 78372000 81582000 85875000 64593000 106610000 6046800 113630000 76198000 107840000 82090000 76870000 80115000 79355000 82608000 14 14 7 14 14 14 14 14 14 14 14 39473000 60445000 350330 60394000 42419000 71776000 45728000 38889000 40902000 43111000 43908000 36755000 56402000 3518100 61786000 40769000 71679000 46061000 41326000 41928000 41931000 42263000 8 8 4 8 8 8 8 8 8 8 8 29899000 53815000 279060 50856000 36995000 34496000 35372000 34872000 37470000 38471000 41967000 27839000 50204000 2528600 51846000 35429000 36159000 36029000 35545000 38187000 37424000 40344000 6 6 3 6 6 6 6 6 6 6 6 9577200000 5282400000 4294800000 17772 682 16324 90181;90182;90183;90184;90185;90186;90187;90188;90189;90190;90191 109031;109032;109033;109034;109035;109036;109037;109038;109039;109040;109041;109042;109043;109044;109045 109041 15 SQESGYYDR Unmodified 1103.452 0.45196697 1026 P43243 MATR3 Matrin-3 yes yes 0 0 0 0 By MS/MS 1 0 1 1 27.783 27.876 2 0.077155 7112 20211116_3439_TMUAki_TMT10x_S_F1 50.108 28.66 34914 40230 0 37315 32749 28761 41577 15127 17144 21996 33849 32508 37528 0 38146 31623 29521 40956 16274 19103 21199 32136 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34914 40230 0 37315 32749 28761 41577 15127 17144 21996 33849 32508 37528 0 38146 31623 29521 40956 16274 19103 21199 32136 1 1 0 1 1 1 1 1 1 1 1 1126500 0 1126500 17773 1026 16325 90192 109046 109046 1 SQESGYYDRMDYEDDRLR Oxidation (M) 2312.9604 0.96040297 1026 P43243 MATR3 Matrin-3 yes yes 0 0 1 2 By MS/MS By MS/MS 1.86 0.833 3 2 2 4 3 33.419 33.289 3;4 9.1064E-18 7296 20211116_3428_TMUAki_TMT10x_P_F1 155.75 147.12 2651500 4583700 8957.4 5632800 6977700 7276200 3729100 6193400 7636300 3941800 4789800 2468800 4281000 147940 5696800 6608600 7286800 4073400 6284300 7496600 3942500 4708700 7 7 3 7 7 7 7 7 7 7 7 1923600 3393800 0 3978500 6499200 6860900 3408100 4536500 5460000 2790100 3421300 1791000 3169000 82736 4060500 6153300 6759400 3682200 4677400 5392500 2796900 3363500 4 4 0 4 4 4 4 4 4 4 4 727900 1189900 8957.4 1654300 478440 415280 320980 1657000 2176300 1151700 1368500 677820 1112000 65202 1636300 455330 527390 391250 1606900 2104200 1145700 1345200 3 3 3 3 3 3 3 3 3 3 3 1681600000 1147800000 533860000 17774 1026 16326 90193;90194;90195;90196;90197;90198;90199 109047;109048;109049;109050;109051;109052;109053 109047 1325 7 SQESGYYDRMDYEDDRLR Unmodified 2296.9655 0.96548835 1026 P43243 MATR3 Matrin-3 yes yes 0 0 0 2 By MS/MS By MS/MS 2 0.816 1 1 1 1 2 38.002 37.808 4 1.4048E-57 10608 20211116_3429_TMUAki_TMT10x_P_F2 242.16 226.63 1571400 2446500 33841 3730400 2699500 1743500 1568200 1321100 1125200 1182500 2100400 1463400 2287700 177620 3685200 2562100 1889200 1636100 1360400 1198700 1160600 1995900 3 3 3 3 3 3 3 3 3 3 3 771280 1181500 13173 1885600 2094200 1319500 1173500 641870 511890 513810 1053000 718240 1105100 94750 1865400 1985700 1363900 1218000 682970 568910 507090 999060 1 1 1 1 1 1 1 1 1 1 1 800150 1265000 20668 1844800 605330 424050 394690 679260 613290 668710 1047300 745170 1182600 82871 1819800 576370 525360 418130 677430 629750 653540 996890 2 2 2 2 2 2 2 2 2 2 2 479170000 256690000 222480000 17775 1026 16326 90200;90201;90202 109054;109055;109056 109054 3 SQETECTYFSTPLLLGK Unmodified 1972.9452 0.94519382 989 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 6.12 1.28 2 4 4 4 3 8 9 75.599 75.617 2;3 6.9595E-43 24343 20211116_3445_TMUAki_TMT10x_S_F6 228.25 205.37 103780000 170610000 905280 163120000 110520000 157120000 117360000 98295000 86257000 103830000 116380000 96630000 159170000 8661300 166850000 106140000 159110000 117730000 103070000 90182000 101180000 111340000 26 26 10 26 26 26 26 26 26 26 26 71161000 117310000 670660 110300000 72261000 124190000 82588000 67825000 59861000 71135000 78400000 66258000 109430000 5914100 113220000 69547000 124390000 82529000 71904000 62551000 69338000 75056000 15 15 6 15 15 15 15 15 15 15 15 32620000 53305000 234610 52825000 38263000 32931000 34777000 30470000 26395000 32693000 37983000 30372000 49737000 2747200 53626000 36598000 34720000 35199000 31170000 27631000 31838000 36282000 11 11 4 11 11 11 11 11 11 11 11 32236000000 16376000000 15860000000 17776 989 16327 90203;90204;90205;90206;90207;90208;90209;90210;90211;90212;90213;90214;90215;90216;90217;90218;90219 109057;109058;109059;109060;109061;109062;109063;109064;109065;109066;109067;109068;109069;109070;109071;109072;109073;109074;109075;109076;109077;109078;109079;109080;109081;109082;109083 109078 27 SQETECTYFSTPLLLGKK Unmodified 2101.0402 0.04015684 989 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 6.18 2.52 2 1 4 4 7 4 65.051 65.344 3;4 3.2894E-32 20350 20211116_3428_TMUAki_TMT10x_P_F1 184.01 173.95 109980000 176320000 498070 174410000 132570000 175880000 121290000 128310000 112060000 124720000 132770000 102410000 164510000 9450000 178090000 126830000 178020000 123330000 132750000 115150000 121950000 127440000 11 11 4 11 11 11 11 11 11 11 11 64971000 101030000 484450 98918000 76032000 129720000 79910000 74914000 66245000 73064000 75361000 60497000 94268000 5773200 101520000 73015000 129020000 80430000 78877000 68314000 71435000 72416000 6 6 3 6 6 6 6 6 6 6 6 45013000 75281000 13628 75495000 56535000 46163000 41377000 53399000 45820000 51651000 57413000 41910000 70246000 3676800 76563000 53814000 48999000 42900000 53875000 46831000 50517000 55025000 5 5 1 5 5 5 5 5 5 5 5 13682000000 7996700000 5685600000 17777 989 16328 90220;90221;90222;90223;90224;90225;90226;90227;90228;90229;90230 109084;109085;109086;109087;109088;109089;109090;109091;109092;109093;109094;109095;109096;109097 109084 14 SQFEELCAELLQK Unmodified 1593.7709 0.77085827 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 0 By MS/MS By MS/MS 4.35 1.23 1 4 4 4 4 9 8 77.78 77.749 2;3 2.3258E-22 27342 20211116_3430_TMUAki_TMT10x_P_F3 202.18 168.29 77142000 123000000 609460 120560000 74859000 108860000 94164000 64875000 56242000 72345000 90364000 71829000 114760000 6693400 122990000 72285000 110630000 93331000 68404000 60087000 70348000 86114000 12 12 7 12 12 12 12 12 12 12 12 45582000 70364000 254620 69377000 41314000 70986000 51837000 35104000 30342000 40892000 51598000 42442000 65653000 3811500 70870000 39885000 71410000 51365000 37676000 32562000 39699000 49117000 7 7 3 7 7 7 7 7 7 7 7 31560000 52633000 354840 51187000 33545000 37872000 42327000 29771000 25901000 31453000 38765000 29387000 49106000 2881900 52122000 32400000 39221000 41966000 30728000 27525000 30650000 36997000 5 5 4 5 5 5 5 5 5 5 5 13749000000 7548700000 6199900000 17778 2345 16329 90231;90232;90233;90234;90235;90236;90237;90238;90239;90240;90241;90242;90243;90244;90245;90246;90247 109098;109099;109100;109101;109102;109103;109104;109105;109106;109107;109108;109109;109110;109111;109112;109113;109114 109098 17 SQFTITPGSEQIR Unmodified 1462.7416 0.74160705 2605 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 46.645 46.768 2 8.0085E-12 12479 20211116_3445_TMUAki_TMT10x_S_F6 156 90.377 2141700 3562400 0 4099300 3109400 3711900 2061000 3520400 3753100 2836800 3188000 1993900 3326100 164090 4138300 2953400 3801000 2197700 3568500 3724000 2798700 3092900 2 2 0 2 2 2 2 2 2 2 2 971010 1590900 0 1793800 2182500 2762400 1284900 1680200 1904600 1285200 1418200 904000 1485200 83914 1830200 2069200 2730100 1369400 1751100 1893200 1271500 1383100 1 1 0 1 1 1 1 1 1 1 1 1170700 1971500 0 2305500 926930 949510 776080 1840200 1848500 1551500 1769800 1089900 1840900 80174 2308100 884120 1071000 828290 1817400 1830800 1527200 1709700 1 1 0 1 1 1 1 1 1 1 1 235620000 104210000 131410000 17779 2605 16330 90248;90249 109115;109116 109116 2 SQGCSEQVLTVLK Unmodified 1447.7341 0.73407884 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS 6 0 1 1 54.471 54.576 3 0.016736 15687 20211116_3445_TMUAki_TMT10x_S_F6 56.648 40.424 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17780 1433 16331 90250 109117 109117 1 SQGGEPTYNVAVGR Unmodified 1433.6899 0.68990583 920;921 P35080;P35080-2 PFN2 Profilin-2 no no 0 0 0 0 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 35.136 35.133 2;3 6.5406E-51 11050 20211116_3441_TMUAki_TMT10x_S_F3 285.5 247.95 1902300 2968800 15369 3713700 5265100 3153300 2265400 1811500 2476300 1513400 2899400 1771200 2773000 201860 3727600 4972800 3216800 2461300 1900600 2525000 1490300 2783800 3 3 1 3 3 3 3 3 3 3 3 1251800 1879800 15369 2238400 4514500 2622900 1463100 1164800 1541600 998190 1794400 1165600 1755400 163700 2264000 4253000 2615500 1646100 1252800 1573900 981750 1723200 2 2 1 2 2 2 2 2 2 2 2 650500 1089000 0 1475300 750540 530410 802340 646740 934740 515180 1104900 605540 1017600 38154 1463600 719840 601240 815230 647750 951180 508570 1060600 1 1 0 1 1 1 1 1 1 1 1 365550000 292780000 72767000 17781 920;921 16332 90251;90252;90253;90254 109118;109119;109120 109120 3 SQGKPIELTPLPLLK Unmodified 1632.9814 0.98144339 1848 Q16537;Q16537-2 PPP2R5E Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 68.333 68.077 3 2.1188E-09 21676 20211116_3440_TMUAki_TMT10x_S_F2 122.1 94.605 14273000 24254000 169440 23450000 16233000 19964000 16316000 14744000 13883000 15003000 17981000 13291000 22629000 1368700 23927000 15577000 20436000 16470000 15262000 14375000 14642000 17218000 3 3 3 3 3 3 3 3 3 3 3 5403500 9126400 92079 9164800 6616400 10446000 7163700 5606600 5042200 5673900 7024400 5031900 8516000 550790 9366100 6363400 10454000 7172100 5946600 5292700 5538700 6714900 1 1 1 1 1 1 1 1 1 1 1 8869600 15128000 77360 14285000 9616300 9518400 9152500 9137400 8840700 9328600 10956000 8259100 14113000 817910 14561000 9213600 9982200 9298400 9315200 9082600 9102900 10504000 2 2 2 2 2 2 2 2 2 2 2 1265300000 785080000 480250000 17782 1848 16333 90255;90256 109121;109122;109123 109122 3 SQGPLEVAEAAVSQSSGLAAK Unmodified 1999.0222 0.02219859 3051 Q9P0M6 H2AFY2 Core histone macro-H2A.2 yes yes 0 0 0 0 By MS/MS By MS/MS 6.4 1.02 1 2 1 1 2 3 76.923 76.917 3 7.406E-14 26984 20211116_3446_TMUAki_TMT10x_S_F7 124.08 99.283 45338000 86177000 989780 61600000 69278000 99718000 74617000 82329000 79529000 83327000 79300000 42221000 80321000 4169300 65148000 66619000 98844000 75560000 84614000 80684000 81341000 76505000 7 7 5 7 7 7 7 7 7 7 7 21476000 41126000 169550 29854000 29400000 60797000 39681000 38365000 37946000 39490000 37230000 19997000 38332000 1202200 31715000 28456000 59524000 39658000 40173000 38654000 38522000 35937000 3 3 1 3 3 3 3 3 3 3 3 23862000 45051000 820230 31746000 39878000 38920000 34936000 43964000 41583000 43837000 42070000 22224000 41988000 2967100 33433000 38163000 39320000 35902000 44442000 42030000 42819000 40568000 4 4 4 4 4 4 4 4 4 4 4 3415100000 1697400000 1717600000 17783 3051 16334 90257;90258;90259;90260;90261 109124;109125;109126;109127;109128;109129;109130 109128 7 SQGVGPIRK Unmodified 940.54541 0.54541385 2874 Q9HD26;Q9HD26-2;Q9HD26-3 GOPC Golgi-associated PDZ and coiled-coil motif-containing protein yes no 0 0 0 1 By MS/MS 1 0 1 1 30.669 30.718 3 0.0013651 8245 20211116_3439_TMUAki_TMT10x_S_F1 85.533 49.653 330810 579380 6933.4 479630 373360 348150 424600 292970 320210 298660 407120 308070 540250 34484 494380 359700 361540 424780 300830 333410 291450 390040 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 330810 579380 6933.4 479630 373360 348150 424600 292970 320210 298660 407120 308070 540250 34484 494380 359700 361540 424780 300830 333410 291450 390040 1 1 1 1 1 1 1 1 1 1 1 13447000 0 13447000 17784 2874 16335 90262 109131 109131 1 SQICDNAALYAQK Unmodified 1480.698 0.69802768 1234 P55060;P55060-3 CSE1L Exportin-2 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 46.405 46.528 3 0.0001332 12469 20211116_3445_TMUAki_TMT10x_S_F6 87.18 54.682 2201200 3789000 36499 4572400 3938000 4380100 2840200 3818800 3761000 3270900 3705900 2049800 3538400 240830 4606400 3750500 4461400 2966800 3894600 3784000 3217100 3576700 2 2 2 2 2 2 2 2 2 2 2 1221400 1920000 1218.6 2278200 2864200 3405200 1938600 2045000 1937700 1738800 2116800 1137300 1792900 125410 2315700 2723100 3368900 2014700 2138700 1977700 1710800 2036500 1 1 1 1 1 1 1 1 1 1 1 979780 1868900 35280 2294200 1073800 974900 901600 1773800 1823300 1532100 1589100 912540 1745500 115430 2290700 1027400 1092500 952070 1755900 1806200 1506300 1540200 1 1 1 1 1 1 1 1 1 1 1 268580000 191410000 77167000 17785 1234 16336 90263;90264 109132;109133 109133 2 SQICDNAALYAQKYDEEFQR Unmodified 2448.1016 0.1015879 1234 P55060;P55060-3 CSE1L Exportin-2 yes no 0 0 0 1 By MS/MS 5.5 0.5 1 1 2 61.485 61.527 3 1.3792E-06 18264 20211116_3444_TMUAki_TMT10x_S_F5 88.872 81.25 1823000 3598900 0 2782300 2290100 1954600 2027900 2147100 2060100 2122300 2496400 1697100 3355100 127350 2883700 2187300 2046600 2071700 2172500 2109900 2073800 2394700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1823000 3598900 0 2782300 2290100 1954600 2027900 2147100 2060100 2122300 2496400 1697100 3355100 127350 2883700 2187300 2046600 2071700 2172500 2109900 2073800 2394700 1 1 0 1 1 1 1 1 1 1 1 502930000 0 502930000 17786 1234 16337 90265;90266 109134 109134 1 SQIDVALSQDSTYQGER Unmodified 1895.8861 0.88609904 2376 Q92900;Q92900-2 UPF1 Regulator of nonsense transcripts 1 yes no 0 0 0 0 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 48.825 48.601 3 1.4734E-08 15445 20211116_3430_TMUAki_TMT10x_P_F3 119.62 90.644 7723000 12730000 128000 14972000 11820000 14397000 9760600 10142000 10217000 8643800 10438000 7191600 11887000 784660 15107000 11288000 14607000 10022000 10482000 10382000 8503700 10063000 6 6 5 6 6 6 6 6 6 6 6 5237000 8234600 68273 10130000 9646600 12402000 7493900 6757300 6731700 5746800 7222200 4876400 7690800 527270 10234000 9197500 12368000 7690400 7125000 6899100 5654200 6951800 4 4 3 4 4 4 4 4 4 4 4 2486000 4495800 59723 4841900 2173800 1995100 2266700 3385100 3485200 2897000 3216100 2315200 4196400 257400 4872500 2090300 2239300 2332100 3357000 3482800 2849500 3110800 2 2 2 2 2 2 2 2 2 2 2 890730000 591110000 299630000 17787 2376 16338 90267;90268;90269;90270 109135;109136;109137;109138;109139;109140;109141 109136 7 SQIFSTASDNQPTVTIK Unmodified 1835.9265 0.92650729 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 By MS/MS By MS/MS 6.75 0.722 5 5 2 6 6 57.294 57.602 2;3;4 1.138E-47 18895 20211116_3446_TMUAki_TMT10x_S_F7 255.39 215.81 45457000 76072000 385440 84290000 67103000 84120000 55595000 71315000 66133000 63505000 66499000 42326000 71014000 4232400 85407000 64063000 85419000 57320000 72921000 66831000 62344000 64138000 16 16 8 16 16 16 16 16 16 16 16 30012000 49328000 310490 54445000 52035000 71668000 42967000 44618000 41135000 39848000 42053000 27946000 46047000 2956700 55439000 49676000 71340000 44001000 46587000 41961000 39114000 40539000 10 10 5 10 10 10 10 10 10 10 10 15444000 26744000 74948 29846000 15068000 12452000 12627000 26697000 24998000 23657000 24446000 14380000 24966000 1275600 29968000 14387000 14078000 13319000 26334000 24870000 23230000 23599000 6 6 3 6 6 6 6 6 6 6 6 16434000000 8654400000 7779400000 17788 614 16339 90271;90272;90273;90274;90275;90276;90277;90278;90279;90280;90281;90282 109142;109143;109144;109145;109146;109147;109148;109149;109150;109151;109152;109153;109154;109155;109156;109157 109155 16 SQIHDIVLVGGSTR Unmodified 1480.7998 0.79979063 615 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 By MS/MS By MS/MS 5.23 2.17 2 4 2 2 3 6 9 3 13 18 40.81 41.014 2;3 1.7752E-51 10178 20211116_3445_TMUAki_TMT10x_S_F6 293.49 255.19 61659000 98901000 1241000 114530000 101590000 100420000 67712000 73687000 73157000 66313000 80491000 57415000 92344000 5412000 115530000 96588000 102570000 70623000 76048000 74447000 65068000 77420000 49 49 21 49 49 49 49 49 49 49 49 35758000 54914000 1054400 64489000 78374000 77899000 44860000 40882000 42940000 37538000 45206000 33301000 51277000 3745400 65314000 74356000 77699000 47196000 43334000 43848000 36799000 43539000 20 20 9 20 20 20 20 20 20 20 20 25901000 43987000 186640 50043000 23211000 22517000 22852000 32805000 30218000 28774000 35285000 24114000 41067000 1666500 50213000 22232000 24868000 23427000 32714000 30599000 28269000 33881000 29 29 12 29 29 29 29 29 29 29 29 37841000000 25810000000 12031000000 17789 615 16340 90283;90284;90285;90286;90287;90288;90289;90290;90291;90292;90293;90294;90295;90296;90297;90298;90299;90300;90301;90302;90303;90304;90305;90306;90307;90308;90309;90310;90311;90312;90313 109158;109159;109160;109161;109162;109163;109164;109165;109166;109167;109168;109169;109170;109171;109172;109173;109174;109175;109176;109177;109178;109179;109180;109181;109182;109183;109184;109185;109186;109187;109188;109189;109190;109191;109192;109193;109194;109195;109196;109197;109198;109199;109200;109201;109202;109203;109204;109205;109206;109207;109208;109209;109210 109192 53 SQIPLSK Unmodified 771.44905 0.44905385 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 6.89 0.567 2 6 1 2 7 34.198 34.558 2 0.010446 9200 20211116_3447_TMUAki_TMT10x_S_F8 97.431 33.166 4934100 8164800 49732 7885700 6794600 7336800 5659500 4950700 5473600 4946600 6551100 4594500 7617500 471850 8056200 6489300 7454500 5794200 5153900 5614800 4831300 6286300 12 12 6 12 12 12 12 12 12 12 12 2884100 4703400 30311 4390300 4721200 5519800 3538000 2792800 3078300 2781700 3691600 2685600 4387600 293090 4517900 4499000 5492200 3636400 2976800 3173500 2717200 3542100 2 2 2 2 2 2 2 2 2 2 2 2050100 3461400 19421 3495300 2073400 1817000 2121400 2157900 2395300 2164900 2859500 1908900 3230000 178760 3538300 1990300 1962200 2157800 2177000 2441300 2114100 2744100 10 10 4 10 10 10 10 10 10 10 10 306570000 191260000 115310000 17790 648 16341 90314;90315;90316;90317;90318;90319;90320;90321;90322 109211;109212;109213;109214;109215;109216;109217;109218;109219;109220;109221;109222;109223;109224 109224 14 SQKERQCALR Carbamidomethyl (C) 1331.6728 0.67281598 2194 Q8N4B4 FBXO39 F-box only protein 39 yes yes 0 1 0 2 By MS/MS 7 0 1 1 50.632 51.305 2 0.02805 15830 20211116_3435_TMUAki_TMT10x_P_F7 63.419 21.418 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17791 2194 16342 90323 109225 109225 19 1 SQKPVMVK Unmodified 915.52117 0.52117293 1053 P46779 RPL28 60S ribosomal protein L28 yes yes 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 33.921 33.699 3 0.0034743 7459 20211116_3428_TMUAki_TMT10x_P_F1 84.213 45.191 1229900 1871600 14659 1918500 1666600 1452900 1389900 542570 570050 583060 1150600 1145300 1746600 121750 1946900 1591900 1488400 1399000 598800 636410 567780 1092000 1 1 1 1 1 1 1 1 1 1 1 1229900 1871600 14659 1918500 1666600 1452900 1389900 542570 570050 583060 1150600 1145300 1746600 121750 1946900 1591900 1488400 1399000 598800 636410 567780 1092000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31481000 31481000 0 17792 1053 16343 90324;90325;90326 109226;109227;109228 109226 3 SQLDIIIHSLK Unmodified 1265.7343 0.73433683 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 6.2 2.64 1 2 2 2 3 68.453 68.614 3 1.1525E-06 21185 20211116_3447_TMUAki_TMT10x_S_F8 123.64 91.577 20133000 31388000 0 37968000 23003000 32729000 23085000 18366000 16560000 21421000 22228000 18744000 29313000 1524200 38191000 22046000 33343000 23210000 19489000 17334000 20795000 21267000 4 4 0 4 4 4 4 4 4 4 4 15953000 24621000 0 29599000 19213000 28846000 18483000 14899000 13172000 17299000 17585000 14852000 22993000 1212400 29833000 18394000 29119000 18622000 15924000 13790000 16796000 16827000 3 3 0 3 3 3 3 3 3 3 3 4180000 6766900 0 8369300 3790000 3883400 4602200 3466500 3387800 4121900 4642800 3891700 6320200 311840 8357800 3652500 4223500 4588100 3565200 3544200 3998600 4439900 1 1 0 1 1 1 1 1 1 1 1 1881300000 1207600000 673750000 17793 648 16344 90327;90328;90329;90330;90331 109229;109230;109231;109232;109233;109234 109234 6 SQLDIIIHSLKK Unmodified 1393.8293 0.82929985 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 1 By MS/MS By MS/MS 2.6 0.49 2 3 2 3 64.874 64.552 3;4 6.5177E-12 22052 20211116_3430_TMUAki_TMT10x_P_F3 163.27 149.06 21757000 33208000 296880 39241000 27596000 34772000 22768000 23964000 20904000 26817000 27044000 20260000 31009000 2128500 39539000 26355000 35457000 23289000 24996000 21565000 26073000 25898000 5 5 4 5 5 5 5 5 5 5 5 12176000 18474000 80149 21769000 22131000 25739000 14617000 13172000 11229000 14670000 14970000 11338000 17250000 1189900 22034000 21034000 25694000 15114000 14071000 11705000 14266000 14325000 3 3 2 3 3 3 3 3 3 3 3 9580700 14735000 216730 17472000 5465600 9033000 8151400 10792000 9674500 12147000 12074000 8922200 13759000 938660 17505000 5321300 9762300 8175000 10925000 9860600 11807000 11573000 2 2 2 2 2 2 2 2 2 2 2 3997600000 2289300000 1708300000 17794 648 16345 90332;90333;90334;90335;90336 109235;109236;109237;109238;109239;109240 109237 6 SQLEAIFLR Unmodified 1075.6026 0.60259438 2136 Q8IV08 PLD3 Phospholipase D3 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 65.959 66.196 2 3.1468E-11 20129 20211116_3447_TMUAki_TMT10x_S_F8 234.47 175.87 18776000 31140000 258340 29818000 21452000 31021000 23957000 20654000 20489000 21417000 24299000 17485000 29052000 1834900 30531000 20648000 31295000 24062000 21545000 21131000 20886000 23322000 5 5 5 5 5 5 5 5 5 5 5 10096000 16580000 204320 16267000 11221000 19823000 12734000 11589000 11008000 11368000 13281000 9401500 15470000 1043200 16670000 10810000 19790000 12784000 12192000 11355000 11111000 12741000 3 3 3 3 3 3 3 3 3 3 3 8680800 14560000 54022 13551000 10231000 11198000 11223000 9064700 9480800 10049000 11018000 8083100 13582000 791760 13861000 9838500 11505000 11278000 9353500 9775900 9774200 10581000 2 2 2 2 2 2 2 2 2 2 2 2403000000 1130700000 1272300000 17795 2136 16346 90337;90338;90339;90340;90341;90342 109241;109242;109243;109244;109245;109246;109247 109247 7 SQLEESISQLR Unmodified 1288.6623 0.6622941 2679 Q9BUR5;Q9BUR5-2 APOO Apolipoprotein O yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 51.628 51.498 2 9.0396E-09 15419 20211116_3442_TMUAki_TMT10x_S_F4 158.05 106.12 3334900 5457200 0 6534600 2802700 2627000 2276800 3482700 3718400 3346800 4435800 3104900 5096200 235710 6531800 2672000 2936500 2381600 3493800 3745200 3274300 4256900 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3334900 5457200 0 6534600 2802700 2627000 2276800 3482700 3718400 3346800 4435800 3104900 5096200 235710 6531800 2672000 2936500 2381600 3493800 3745200 3274300 4256900 2 2 0 2 2 2 2 2 2 2 2 327640000 0 327640000 17796 2679 16347 90343;90344;90345 109248;109249;109250 109250 3 SQLELLISPTCSCK Unmodified 1634.8008 0.80077819 1875 Q29RF7;Q29RF7-3 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 0 0 0 0 By MS/MS 7 0 1 1 65.452 66.06 3 0.1062 21879 20211116_3435_TMUAki_TMT10x_P_F7 31.04 21.291 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17797 1875 16348 90346 109251 109251 1 SQLIDELADKFNR Unmodified 1547.7944 0.79437091 2192 Q8N3U4;Q8N3U4-2 STAG2 Cohesin subunit SA-2 yes no 0 0 0 1 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 73.134 73.232 3 6.6583E-05 24929 20211116_3435_TMUAki_TMT10x_P_F7 97.2 64.723 13648000 23405000 42186 17696000 17971000 25574000 18015000 20861000 19814000 20420000 19958000 12706000 21818000 1022800 18574000 17222000 25462000 18326000 21435000 20084000 19961000 19248000 3 3 1 3 3 3 3 3 3 3 3 6465300 10351000 0 7853500 7785400 15773000 8818300 10082000 9397900 9672800 8875500 6018400 9649200 382200 8306700 7479800 15452000 8908700 10525000 9516900 9463800 8578100 1 1 0 1 1 1 1 1 1 1 1 7182600 13054000 42186 9842900 10186000 9801000 9196300 10779000 10416000 10747000 11083000 6687800 12169000 640560 10268000 9742200 10009000 9417700 10909000 10567000 10498000 10670000 2 2 1 2 2 2 2 2 2 2 2 1782000000 837910000 944100000 17798 2192 16349 90347;90348;90349 109252;109253;109254 109252 3 SQLLKDPQVLFAGYK Unmodified 1705.9403 0.94030686 1177 P52435;Q9GZM3;Q9H1A7 POLR2J;POLR2J2;POLR2J3 DNA-directed RNA polymerase II subunit RPB11-a;DNA-directed RNA polymerase II subunit RPB11-b1;DNA-directed RNA polymerase II subunit RPB11-b2 yes no 0 0 0 1 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 70.596 70.347 3 1.1804E-06 23141 20211116_3442_TMUAki_TMT10x_S_F4 99.003 62.611 12616000 21286000 153030 19683000 12773000 21402000 14114000 9612400 10225000 10902000 13548000 11747000 19856000 1190700 20219000 12290000 21432000 14126000 10407000 10690000 10595000 12966000 3 3 3 3 3 3 3 3 3 3 3 12616000 21286000 153030 19683000 12773000 21402000 14114000 9612400 10225000 10902000 13548000 11747000 19856000 1190700 20219000 12290000 21432000 14126000 10407000 10690000 10595000 12966000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 352860000 352860000 0 17799 1177 16350 90350;90351;90352 109255;109256;109257;109258;109259 109259 5 SQLLKDPQVLFAGYKVPHPLEHK Unmodified 2643.4537 0.4536923 1177 P52435;Q9GZM3;Q9H1A7 POLR2J;POLR2J2;POLR2J3 DNA-directed RNA polymerase II subunit RPB11-a;DNA-directed RNA polymerase II subunit RPB11-b1;DNA-directed RNA polymerase II subunit RPB11-b2 yes no 0 0 0 2 By MS/MS By MS/MS 4 0 2 1 1 60.726 60.725 6 1.3254E-07 18751 20211116_3431_TMUAki_TMT10x_P_F4 95.71 88.35 22282000 35963000 523650 34018000 24903000 31370000 23738000 21697000 21468000 21864000 25908000 20751000 33550000 2372100 34802000 23881000 31904000 24069000 22553000 22097000 21346000 24855000 6 6 6 6 6 6 6 6 6 6 6 11407000 17562000 247940 15935000 12359000 20806000 13102000 10652000 10517000 10974000 12574000 10623000 16381000 1190200 16444000 11884000 20668000 13171000 11352000 10885000 10705000 12066000 3 3 3 3 3 3 3 3 3 3 3 10875000 18402000 275700 18083000 12544000 10563000 10636000 11045000 10951000 10889000 13334000 10128000 17169000 1181900 18358000 11996000 11236000 10898000 11201000 11212000 10641000 12789000 3 3 3 3 3 3 3 3 3 3 3 1168600000 584640000 583970000 17800 1177 16351 90353;90354 109260;109261;109262;109263;109264;109265 109260 6 SQLLQYVYNLVPR Unmodified 1591.8722 0.8722273 911 P33991 MCM4 DNA replication licensing factor MCM4 yes yes 0 0 0 0 By MS/MS 7 0 1 1 80.502 80.522 2 3.0405E-12 28026 20211116_3435_TMUAki_TMT10x_P_F7 132.32 82.2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17801 911 16352 90355 109266 109266 1 SQLLSYIDR Unmodified 1093.5768 0.57677356 913 P33993;P33993-3 MCM7 DNA replication licensing factor MCM7 yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 58.213 58.273 2 0.00041184 18693 20211116_3435_TMUAki_TMT10x_P_F7 88.948 45.179 6158700 10689000 36121 10761000 9159200 12075000 8108300 5808800 5250800 5818900 7294200 5734600 9974100 586280 10993000 8758000 12079000 8191100 6222600 5539300 5682600 6973200 1 1 1 1 1 1 1 1 1 1 1 6158700 10689000 36121 10761000 9159200 12075000 8108300 5808800 5250800 5818900 7294200 5734600 9974100 586280 10993000 8758000 12079000 8191100 6222600 5539300 5682600 6973200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 369410000 369410000 0 17802 913 16353 90356;90357 109267;109268 109268 2 SQLLSYIDRLAPR Unmodified 1530.8518 0.85182621 913 P33993;P33993-3 MCM7 DNA replication licensing factor MCM7 yes no 0 0 0 1 By MS/MS 4 0 1 1 70.151 69.974 3 5.4522E-09 23067 20211116_3442_TMUAki_TMT10x_S_F4 122.33 84.089 1372900 2295400 17114 2312300 2821000 1255400 1570000 1386300 1178900 1276200 1660300 1278400 2141900 150050 2341900 2674500 1347100 1645800 1399600 1233500 1250900 1586700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1372900 2295400 17114 2312300 2821000 1255400 1570000 1386300 1178900 1276200 1660300 1278400 2141900 150050 2341900 2674500 1347100 1645800 1399600 1233500 1250900 1586700 1 1 1 1 1 1 1 1 1 1 1 288110000 0 288110000 17803 913 16354 90358 109269 109269 1 SQLSCVVVDDIER Unmodified 1518.7348 0.73480712 1048 P46459;P46459-2 NSF Vesicle-fusing ATPase yes no 0 0 0 0 By MS/MS 2 1 1 1 2 58.043 57.691 2;3 6.2467E-13 19289 20211116_3439_TMUAki_TMT10x_S_F1 142.77 111.69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17804 1048 16355 90359;90360 109270;109271 109270 2 SQMDGLIPGVEPR Oxidation (M) 1413.6922 0.69221402 3254 Q9Y2X3 NOP58 Nucleolar protein 58 yes yes 0 0 1 0 By MS/MS By MS/MS 2.83 0.687 2 3 1 3 3 46.626 46.468 2;3 0.00044439 15656 20211116_3441_TMUAki_TMT10x_S_F3 89.382 65.228 3629200 6092400 50021 7951800 3692500 4045900 2770800 6468700 7186000 5032500 6168900 3379400 5691800 340490 7922400 3519900 4417100 2995400 6411700 7081200 4974100 5982400 4 4 3 4 4 4 4 4 4 4 4 677150 1132000 0 1142900 1490000 1926100 849250 1142900 1116200 979510 1082100 630430 1056300 59622 1176800 1412000 1896300 903190 1196700 1122600 963380 1044900 1 1 0 1 1 1 1 1 1 1 1 2952000 4960400 50021 6808900 2202600 2119800 1921500 5325800 6069800 4053000 5086800 2749000 4635500 280860 6745500 2107900 2520800 2092200 5215000 5958600 4010800 4937500 3 3 3 3 3 3 3 3 3 3 3 483610000 139870000 343750000 17805 3254 16356 90361;90362;90363;90364;90365;90366 109272;109273;109274;109275;109276 109274 3232 5 SQMDGLIPGVEPR Unmodified 1397.6973 0.6972994 3254 Q9Y2X3 NOP58 Nucleolar protein 58 yes yes 0 0 0 0 By MS/MS 4 0 1 1 57.483 57.41 2 0.029667 17886 20211116_3442_TMUAki_TMT10x_S_F4 61.11 43.379 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17806 3254 16356 90367 109277 109277 1 SQMESMLISGYALNCVVGSQGMPK 3 Oxidation (M) 2634.1798 0.17977992 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 3 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 67.195 67.466 3;4 3.1371E-05 22998 20211116_3446_TMUAki_TMT10x_S_F7 67.532 58.823 6105500 10395000 208660 9454000 7251200 8410400 6393100 8715500 8302700 8338500 8022600 5686100 9696300 681080 9695500 6941600 8639200 6588800 8834600 8353100 8159400 7747800 4 4 2 4 4 4 4 4 4 4 4 751200 1242500 0 1134800 661940 1975900 759650 1452200 1510300 1357200 1067700 699360 1159000 50454 1177900 636470 1949300 788680 1500100 1487900 1329400 1043700 1 1 0 1 1 1 1 1 1 1 1 5354300 9152700 208660 8319200 6589300 6434400 5633500 7263300 6792400 6981300 6954900 4986700 8537300 630630 8517700 6305100 6689900 5800100 7334600 6865200 6829900 6704100 3 3 2 3 3 3 3 3 3 3 3 2569700000 1349600000 1220100000 17807 712 16357 90368;90369;90370;90371 109278;109279;109280;109281;109282 109280 810;811;812 5 SQMESMLISGYALNCVVGSQGMPK 2 Oxidation (M) 2618.1849 0.1848653 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 2 0 By MS/MS By MS/MS 8 0 4 2 2 73.508 73.446 3;4 8.5397E-08 23209 20211116_3447_TMUAki_TMT10x_S_F8 92.833 83.669 11146000 19708000 192730 17455000 12316000 17163000 13714000 9616000 7626700 10736000 13250000 10379000 18381000 1053000 17962000 11852000 17333000 13649000 10191000 8224800 10439000 12608000 5 5 3 5 5 5 5 5 5 5 5 7681400 13206000 80002 11882000 7227000 13136000 9355000 6298100 5146000 7073500 9154000 7152400 12317000 658090 12234000 6984800 13151000 9247600 6771800 5561500 6876400 8706500 3 3 2 3 3 3 3 3 3 3 3 3464900 6502100 112730 5573300 5089200 4027000 4359300 3317900 2480700 3662800 4096100 3226800 6063700 394860 5728200 4866900 4181900 4401900 3419500 2663300 3563100 3901400 2 2 1 2 2 2 2 2 2 2 2 3036700000 1829000000 1207700000 17808 712 16357 90372;90373;90374;90375 109283;109284;109285;109286;109287 109287 810;811;812 5 SQNFDILQSAISK Unmodified 1449.7464 0.74635808 3006 Q9NXF1;Q9NXF1-2 TEX10 Testis-expressed sequence 10 protein yes no 0 0 0 0 By MS/MS 7 0 1 1 67.751 68.282 3 0.00022321 22818 20211116_3435_TMUAki_TMT10x_P_F7 81.619 53.22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17809 3006 16358 90376 109288 109288 1 SQNIVTDSSSLSAEAIR Unmodified 1776.8854 0.88537076 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.75 0.661 3 4 1 3 5 50.83 50.79 2;3 3.8472E-108 17462 20211116_3441_TMUAki_TMT10x_S_F3 367.33 319.33 13848000 23917000 233240 25837000 18085000 19826000 14024000 19855000 21166000 18656000 21049000 12895000 22324000 1198400 26132000 17248000 20569000 14659000 20150000 21216000 18270000 20308000 10 10 6 10 10 10 10 10 10 10 10 5070700 8034900 147070 8797100 10426000 12444000 7175800 6911500 7305100 6530000 7500700 4722200 7500300 602430 8975200 9922400 12328000 7452700 7294900 7432900 6393200 7229600 3 3 2 3 3 3 3 3 3 3 3 8777600 15882000 86169 17039000 7659000 7382100 6848500 12943000 13861000 12126000 13548000 8173100 14824000 596000 17157000 7326100 8241000 7206200 12855000 13784000 11877000 13079000 7 7 4 7 7 7 7 7 7 7 7 2469000000 1250500000 1218500000 17810 1475 16359 90377;90378;90379;90380;90381;90382;90383;90384 109289;109290;109291;109292;109293;109294;109295;109296;109297;109298;109299 109294 11 SQNVMAAASIANIVK Oxidation (M) 1531.8028 0.8028271 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 1 0 By MS/MS By MS/MS 5.33 3.09 4 4 4 7 5 57.923 58.075 2;3 1.02E-14 17322 20211116_3436_TMUAki_TMT10x_P_F8 154.81 133.18 55397000 95949000 510830 91699000 87928000 125620000 73580000 111240000 108200000 94333000 90446000 51580000 89514000 5041300 94355000 83949000 125560000 76458000 113320000 107930000 92827000 87800000 14 14 7 14 14 14 14 14 14 14 14 37058000 63720000 389720 60947000 66825000 105710000 56562000 74215000 70718000 62443000 59549000 34505000 59448000 3471800 63041000 63816000 104220000 58348000 76694000 70928000 61471000 57790000 9 9 4 9 9 9 9 9 9 9 9 18339000 32228000 121110 30752000 21103000 19909000 17018000 37022000 37482000 31890000 30897000 17075000 30067000 1569500 31314000 20133000 21335000 18109000 36624000 37003000 31356000 30009000 5 5 3 5 5 5 5 5 5 5 5 17868000000 10532000000 7336100000 17811 712 16360 90385;90386;90387;90388;90389;90390;90391;90392;90393;90394;90395;90396 109300;109301;109302;109303;109304;109305;109306;109307;109308;109309;109310;109311;109312;109313;109314 109306 813 15 SQNVMAAASIANIVK Unmodified 1515.8079 0.80791248 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 2 4 3 3 66.734 66.521 2;3 4.0281E-33 22310 20211116_3429_TMUAki_TMT10x_P_F2 220.48 188.99 62960000 105540000 1204600 108020000 80485000 84119000 78168000 50102000 47434000 52923000 78279000 58630000 98488000 6399200 109670000 77176000 86405000 78459000 52741000 50696000 51571000 74558000 9 9 5 9 9 9 9 9 9 9 9 28056000 43132000 33282 45226000 36117000 44408000 37077000 17785000 16276000 19512000 32028000 26122000 40255000 2296700 45978000 34646000 44692000 36915000 19478000 18027000 18985000 30408000 4 4 1 4 4 4 4 4 4 4 4 34905000 62406000 1171300 62797000 44369000 39711000 41091000 32317000 31158000 33412000 46251000 32508000 58233000 4102400 63691000 42530000 41713000 41544000 33263000 32669000 32586000 44149000 5 5 4 5 5 5 5 5 5 5 5 8959900000 5848100000 3111800000 17812 712 16360 90397;90398;90399;90400;90401;90402 109315;109316;109317;109318;109319;109320;109321;109322;109323 109317 9 SQPAILLLTAAR Unmodified 1252.7503 0.75032125 1921 Q5JTV8-3;Q5JTV8 TOR1AIP1 Torsin-1A-interacting protein 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 66.244 65.782 2 0.0048804 23590 20211116_3441_TMUAki_TMT10x_S_F3 69.846 17.547 4373500 7576700 145820 6972200 6359200 5887600 5456600 7631400 6020300 6055200 7098000 4073200 7067700 526300 7139200 6083700 6104000 5599600 7623900 6138200 5978700 6813900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4373500 7576700 145820 6972200 6359200 5887600 5456600 7631400 6020300 6055200 7098000 4073200 7067700 526300 7139200 6083700 6104000 5599600 7623900 6138200 5978700 6813900 1 1 1 1 1 1 1 1 1 1 1 376400000 0 376400000 17813 1921 16361 90403 109324 109324 1 SQPAPAEFR Unmodified 1001.493 0.49304393 800 P25325;P25325-2 MPST 3-mercaptopyruvate sulfurtransferase yes no 0 0 0 0 By MS/MS 3 0 1 1 32.393 32.148 2 0.00093092 9903 20211116_3441_TMUAki_TMT10x_S_F3 107.79 75.433 267930 420080 0 457630 277430 219840 262930 271330 321090 253290 358450 249430 392120 16911 460650 265300 239780 269260 272740 325430 248120 344630 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 267930 420080 0 457630 277430 219840 262930 271330 321090 253290 358450 249430 392120 16911 460650 265300 239780 269260 272740 325430 248120 344630 1 1 0 1 1 1 1 1 1 1 1 18068000 0 18068000 17814 800 16362 90404 109325 109325 1 SQPELIEAHTCER Unmodified 1568.7253 0.72530506 2669 Q9BTW9;Q9BTW9-4 TBCD Tubulin-specific chaperone D yes no 0 0 0 0 By MS/MS By MS/MS 2.4 1.5 2 1 1 1 2 3 32.02 31.946 3 1.7689E-12 8337 20211116_3429_TMUAki_TMT10x_P_F2 157.82 131.7 1017400 1569600 9212 1606000 1472800 1355900 1151100 945530 979780 825480 1364300 947340 1464700 97583 1632100 1404500 1387500 1179100 978460 1017900 811150 1304200 4 4 3 4 4 4 4 4 4 4 4 421470 665300 3146.3 647810 907470 840020 508200 419630 446550 336390 570650 392460 620730 44682 664980 860280 834450 534450 445380 461390 331970 546640 1 1 1 1 1 1 1 1 1 1 1 595910 904270 6065.7 958210 565290 515830 642920 525890 533230 489080 793640 554880 843980 52901 967110 544230 553010 644690 533080 556510 479180 757530 3 3 2 3 3 3 3 3 3 3 3 115190000 72486000 42704000 17815 2669 16363 90405;90406;90407;90408;90409 109326;109327;109328;109329 109327 4 SQPERDWVLNEFR Unmodified 1674.8114 0.81141795 2368 Q92841;Q92841-3;Q92841-1;Q92841-2 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 0 1 By MS/MS By MS/MS 3.6 1.02 2 2 4 2 5 5 53.822 53.829 2;3 4.2409E-24 15935 20211116_3431_TMUAki_TMT10x_P_F4 199.21 178.59 71124000 112540000 954360 126040000 90893000 88509000 81043000 55791000 50563000 57771000 84748000 66224000 105060000 6234600 127060000 86909000 91747000 81777000 58435000 53986000 56341000 80695000 11 11 6 11 11 11 11 11 11 11 11 34637000 51520000 409190 59229000 51841000 59479000 45591000 26114000 23289000 26292000 40182000 32249000 48103000 2881700 59882000 49535000 59828000 45881000 28240000 25268000 25671000 38239000 5 5 3 5 5 5 5 5 5 5 5 36487000 61020000 545170 66809000 39052000 29030000 35452000 29677000 27275000 31479000 44566000 33975000 56960000 3352900 67182000 37374000 31919000 35896000 30195000 28719000 30670000 42456000 6 6 3 6 6 6 6 6 6 6 6 6583100000 3953500000 2629600000 17816 2368 16364 90410;90411;90412;90413;90414;90415;90416;90417;90418;90419 109330;109331;109332;109333;109334;109335;109336;109337;109338;109339;109340;109341;109342;109343;109344 109335 15 SQPFVDHVFTFTILDNR Unmodified 2035.0163 0.016325351 2280 Q8TDN6 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 76.358 76.417 3 3.1791E-08 24964 20211116_3436_TMUAki_TMT10x_P_F8 117.33 106.06 8947800 15033000 53636 13039000 8929600 18750000 10737000 9659000 9517300 11380000 11802000 8331300 14020000 739440 13528000 8607400 18544000 10759000 10331000 9816600 11044000 11314000 2 2 1 2 2 2 2 2 2 2 2 8947800 15033000 53636 13039000 8929600 18750000 10737000 9659000 9517300 11380000 11802000 8331300 14020000 739440 13528000 8607400 18544000 10759000 10331000 9816600 11044000 11314000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1612900000 1612900000 0 17817 2280 16365 90420;90421 109345;109346 109346 2 SQPVSLPEELNR Unmodified 1367.7045 0.70449327 2339 Q92541 RTF1 RNA polymerase-associated protein RTF1 homolog yes yes 0 0 0 0 By MS/MS 3 0 1 1 47.087 46.742 2 8.6303E-15 15797 20211116_3441_TMUAki_TMT10x_S_F3 155.99 117.86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17818 2339 16366 90422 109347 109347 1 SQQERDWVLNEFK Unmodified 1677.8111 0.8110836 710 P17844;P17844-2 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 1 By MS/MS By MS/MS 3.75 0.829 2 1 1 1 3 57.431 57.379 3 1.1836E-11 16499 20211116_3444_TMUAki_TMT10x_S_F5 148.03 125.83 50589000 79530000 181160 91932000 55422000 35846000 43925000 23035000 19974000 26333000 50579000 47100000 74256000 3880900 92071000 52828000 39689000 44414000 24166000 22454000 25582000 47844000 4 4 2 4 4 4 4 4 4 4 4 6378900 9424000 57549 11481000 8563700 9740600 7666700 4034500 3388900 3802000 7497800 5939900 8801300 613090 11541000 8192200 9902100 7691100 4383000 3780600 3722800 7105600 1 1 1 1 1 1 1 1 1 1 1 44210000 70106000 123610 80451000 46859000 26106000 36258000 19001000 16585000 22531000 43081000 41160000 65455000 3267800 80530000 44635000 29787000 36723000 19783000 18674000 21860000 40739000 3 3 1 3 3 3 3 3 3 3 3 3633400000 956410000 2677000000 17819 710 16367 90423;90424;90425;90426 109348;109349;109350;109351;109352 109352 5 SQQPLKPQVHTPVATVK Unmodified 1857.0472 0.047231549 1998 Q6P3W7 SCYL2 SCY1-like protein 2 yes yes 0 0 0 1 By MS/MS 2 0 1 1 37.798 37.559 4 0.0020081 10605 20211116_3429_TMUAki_TMT10x_P_F2 62.203 42.879 601180 930860 0 1116200 1672800 1394900 829620 848180 977400 673780 934620 559740 869280 61790 1129800 1582500 1391600 890180 884750 986350 665230 902920 1 1 0 1 1 1 1 1 1 1 1 601180 930860 0 1116200 1672800 1394900 829620 848180 977400 673780 934620 559740 869280 61790 1129800 1582500 1391600 890180 884750 986350 665230 902920 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 111010000 111010000 0 17820 1998 16368 90427 109353 109353 1 SQRDPLAADESAPQR Unmodified 1639.7914 0.79141079 2471 Q96GA3 LTV1 Protein LTV1 homolog yes yes 0 0 0 1 By MS/MS 2 0 1 1 30.086 29.856 3 2.2871E-16 7482 20211116_3429_TMUAki_TMT10x_P_F2 145.33 124.9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17821 2471 16369 90428 109354 109354 1 SQTAMSETYDFLFK Acetyl (Protein N-term) 1708.7654 0.76543854 741 P20338 RAB4A Ras-related protein Rab-4A yes yes 1 0 0 0 By MS/MS 3.5 0.5 1 1 2 81.795 81.777 2 0.00014943 27833 20211116_3442_TMUAki_TMT10x_S_F4 61.353 49.863 698960 1279200 8082.5 1405800 1030600 737740 957280 570470 545690 644950 1050300 650870 1194100 70126 1415300 986840 789010 962100 590690 591060 626830 997540 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 698960 1279200 8082.5 1405800 1030600 737740 957280 570470 545690 644950 1050300 650870 1194100 70126 1415300 986840 789010 962100 590690 591060 626830 997540 1 1 1 1 1 1 1 1 1 1 1 174260000 0 174260000 17822 741 16370 90429;90430 109355 109355 1 SQTEAVTFLANHDDSR Unmodified 1789.8231 0.82310485 3248 Q9Y2S7 POLDIP2 Polymerase delta-interacting protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 2.8 0.748 2 2 1 2 3 42.861 42.799 3 1.1742E-15 12853 20211116_3430_TMUAki_TMT10x_P_F3 156.17 139.09 4363300 7114500 201820 9215400 6695500 6147800 4699600 5732800 6394700 5007800 6599900 4064100 6646400 568710 9207000 6381100 6442900 4923900 5827900 6438600 4920800 6360400 7 7 6 7 7 7 7 7 7 7 7 1470500 2257500 14182 2928000 4231500 3715000 2104400 2175000 2387800 1759100 2151000 1369100 2109000 160010 2951400 4003800 3701500 2254600 2276600 2408400 1735100 2082300 3 3 2 3 3 3 3 3 3 3 3 2892900 4857000 187640 6287400 2464100 2432800 2595200 3557800 4006800 3248800 4449000 2695000 4537400 408700 6255500 2377300 2741400 2669200 3551300 4030200 3185600 4278100 4 4 4 4 4 4 4 4 4 4 4 391930000 183840000 208090000 17823 3248 16371 90431;90432;90433;90434;90435 109356;109357;109358;109359;109360;109361;109362 109358 7 SQTIYEIIDNSQGFYVCPVEPQNR Unmodified 2856.3389 0.33885806 3335 Q9Y617 PSAT1 Phosphoserine aminotransferase yes yes 0 0 0 0 By MS/MS By MS/MS 6.4 0.8 1 1 3 4 1 78.648 78.676 3;4 1.9838E-11 25184 20211116_3434_TMUAki_TMT10x_P_F6 108.79 101.69 16978000 27417000 137020 24505000 17103000 24992000 20309000 13636000 10816000 15004000 18967000 15809000 25572000 1485100 25212000 16484000 25175000 20138000 14478000 11708000 14597000 18045000 5 5 4 5 5 5 5 5 5 5 5 12176000 20308000 137020 17764000 11939000 20665000 14839000 10448000 8396600 11053000 14186000 11338000 18940000 1133800 18345000 11529000 20644000 14700000 11157000 9029500 10770000 13506000 4 4 4 4 4 4 4 4 4 4 4 4802800 7109000 0 6741100 5164000 4326300 5470000 3187400 2419300 3950500 4780900 4471500 6632100 351280 6866900 4955800 4530700 5438000 3321000 2678600 3826900 4538800 1 1 0 1 1 1 1 1 1 1 1 5057500000 3662700000 1394900000 17824 3335 16372 90436;90437;90438;90439;90440 109363;109364;109365;109366;109367 109364 5 SQTTGFPSLITIFSAPNYLDVYNNK Unmodified 2789.3912 0.3912112 1545 Q08209;Q08209-2;Q08209-3;P16298;Q08209-5;P16298-2;P16298-3;P16298-4 PPP3CA;PPP3CB Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2B catalytic subunit beta isoform yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 2 4 3 3 81.811 81.797 3;4 8.2966E-61 27808 20211116_3442_TMUAki_TMT10x_S_F4 233.26 224.16 5763100 9026100 24342 8426200 6504200 7091000 6908100 4392900 4260600 5035800 6359800 5365700 8420100 452730 8618500 6244400 7245500 6904100 4621800 4524800 4891700 6070100 6 6 2 6 6 6 6 6 6 6 6 2005000 3039400 12708 2904600 1787900 3180300 2129200 1525600 1445500 1717900 2124300 1866800 2835600 160030 2976900 1722700 3185700 2120800 1640400 1524600 1669900 2028300 2 2 1 2 2 2 2 2 2 2 2 3758100 5986700 11634 5521600 4716300 3910700 4778900 2867200 2815100 3317900 4235500 3498900 5584500 292700 5641700 4521700 4059900 4783300 2981300 3000200 3221800 4041900 4 4 1 4 4 4 4 4 4 4 4 1710500000 1075500000 635030000 17825 1545 16373 90441;90442;90443;90444;90445;90446 109368;109369;109370;109371;109372;109373 109371 6 SQVDKLTLTSR Unmodified 1246.6881 0.68811492 484 P04181 OAT Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form yes yes 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 37.334 37.718 3 0.00018282 8466 20211116_3447_TMUAki_TMT10x_S_F8 93.649 66 738460 1240700 0 1076500 1135300 965900 848450 597830 584660 590200 949210 687510 1157100 58757 1108200 1080800 982540 867450 626180 619270 576740 904380 2 2 0 2 2 2 2 2 2 2 2 351890 582680 0 502690 677840 611380 407190 310160 293330 299360 435380 327620 543400 30262 520100 642910 609360 423650 330230 308430 292820 415600 1 1 0 1 1 1 1 1 1 1 1 386570 658030 0 573860 457460 354520 441260 287680 291330 290840 513830 359900 613700 28495 588100 437930 373190 443800 295960 310840 283920 488790 1 1 0 1 1 1 1 1 1 1 1 53014000 33956000 19058000 17826 484 16374 90447;90448;90449 109374;109375 109375 2 SQVEPADYKADEDPALFQSVK Unmodified 2336.1172 0.11722119 1084 P48739;P48739-2;P48739-3 PITPNB Phosphatidylinositol transfer protein beta isoform yes no 0 0 0 1 By MS/MS By MS/MS 4.33 0.943 2 3 3 1 6 3 58.676 58.699 3;4 1.753E-19 18212 20211116_3433_TMUAki_TMT10x_P_F5 153.83 138.52 55959000 97892000 546650 98887000 83219000 116970000 70385000 80706000 84404000 73812000 75600000 52102000 91347000 4822300 101080000 79459000 117230000 72499000 83680000 84941000 72373000 73201000 14 14 9 14 14 14 14 14 14 14 14 40556000 69476000 344390 70735000 69415000 103010000 58876000 57912000 60952000 52347000 52930000 37760000 64833000 3532500 72555000 66278000 101930000 60336000 60990000 61632000 51354000 51308000 10 10 7 10 10 10 10 10 10 10 10 15403000 28416000 202250 28152000 13804000 13966000 11509000 22795000 23453000 21465000 22670000 14342000 26514000 1289800 28526000 13181000 15301000 12163000 22691000 23309000 21019000 21893000 4 4 2 4 4 4 4 4 4 4 4 8867300000 5994900000 2872500000 17827 1084 16375 90450;90451;90452;90453;90454;90455;90456;90457;90458 109376;109377;109378;109379;109380;109381;109382;109383;109384;109385;109386;109387;109388;109389 109384 14 SQVEQQQLITVEK Unmodified 1528.8097 0.80968662 2014 Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 yes yes 0 0 0 0 By MS/MS 4 0 1 1 65.098 65.198 3 0.10436 20624 20211116_3431_TMUAki_TMT10x_P_F4 25.982 5.0294 10034000 19555000 121500 13257000 26279000 43582000 23209000 27031000 26654000 24721000 20925000 9343200 18223000 1172600 14423000 25127000 42156000 23809000 28250000 26761000 24239000 20363000 2 2 2 2 2 2 2 2 2 2 2 10034000 19555000 121500 13257000 26279000 43582000 23209000 27031000 26654000 24721000 20925000 9343200 18223000 1172600 14423000 25127000 42156000 23809000 28250000 26761000 24239000 20363000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 824970000 824970000 0 17828 2014 16376 90459 109390;109391 109391 2 SQVFSTAADGQTQVEIK Unmodified 1807.8952 0.89520716 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4.62 1 2 4 4 3 7 6 53.668 53.739 2;3 1.7939E-142 15068 20211116_3444_TMUAki_TMT10x_S_F5 407.25 372.49 53377000 85207000 593170 97462000 78145000 84601000 56224000 84219000 74689000 67242000 74508000 49700000 79553000 4896300 98369000 74386000 86971000 58749000 85140000 75169000 66372000 71881000 17 17 9 17 17 17 17 17 17 17 17 25875000 40122000 369830 44916000 53522000 64337000 37446000 41233000 37212000 31972000 34511000 24093000 37456000 2604400 45774000 50920000 63825000 38817000 42812000 37771000 31607000 33375000 8 8 5 8 8 8 8 8 8 8 8 27501000 45085000 223340 52546000 24623000 20264000 18778000 42986000 37478000 35270000 39997000 25607000 42097000 2291900 52596000 23467000 23146000 19932000 42328000 37398000 34765000 38506000 9 9 4 9 9 9 9 9 9 9 9 16911000000 8880800000 8030700000 17829 972 16377 90460;90461;90462;90463;90464;90465;90466;90467;90468;90469;90470;90471;90472 109392;109393;109394;109395;109396;109397;109398;109399;109400;109401;109402;109403;109404;109405;109406;109407;109408 109405 17 SQVVAGTNYFIK Unmodified 1325.698 0.69795133 483 P04080 CSTB Cystatin-B yes yes 0 0 0 0 By MS/MS By MS/MS 3 2.92 4 2 2 3 5 57.037 56.947 2;3 1.7144E-30 16824 20211116_3428_TMUAki_TMT10x_P_F1 266.57 207.75 30673000 50717000 129460 62626000 44095000 48043000 34618000 35723000 33405000 34455000 42471000 28560000 47368000 2753800 62830000 42044000 49565000 35572000 36904000 34359000 33702000 40689000 7 7 3 7 7 7 7 7 7 7 7 15559000 25066000 50777 29002000 30500000 34599000 21108000 17120000 16337000 17169000 20567000 14487000 23404000 1478100 29392000 29008000 34509000 21754000 18290000 16979000 16766000 19709000 4 4 2 4 4 4 4 4 4 4 4 15114000 25651000 78681 33624000 13595000 13444000 13510000 18603000 17068000 17286000 21904000 14073000 23965000 1275700 33437000 13036000 15056000 13819000 18614000 17380000 16936000 20980000 3 3 1 3 3 3 3 3 3 3 3 2707100000 1965900000 741190000 17830 483 16378 90473;90474;90475;90476;90477;90478;90479;90480 109409;109410;109411;109412;109413;109414;109415;109416;109417;109418 109410 10 SRAEAALEEESR Unmodified 1346.6426 0.64262129 2393 Q969G3;Q969G3-6;Q969G3-5;Q969G3-3;Q969G3-2;Q969G3-4 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 4 2 2 29.916 29.949 2;3 9.3853E-29 7933 20211116_3439_TMUAki_TMT10x_S_F1 267.07 216.01 963930 1616600 23783 1348000 1365300 1587100 1310600 929130 933800 998890 1343200 897670 1507500 105300 1397700 1309000 1587300 1320600 979970 980990 972690 1283100 4 4 2 4 4 4 4 4 4 4 4 470070 764050 15773 665360 788560 937460 582670 432270 437070 485970 668550 437790 712570 56073 689820 751760 926890 597290 466600 459230 472410 637760 2 2 1 2 2 2 2 2 2 2 2 493850 852570 8009.3 682640 576690 649640 727960 496870 496720 512920 674660 459880 794900 49228 707920 557230 660420 723330 513370 521760 500280 645310 2 2 1 2 2 2 2 2 2 2 2 151510000 78244000 73271000 17831 2393 16379 90481;90482;90483;90484 109419;109420;109421;109422 109422 4 SRAEYTEASGPCILTPHR Unmodified 2043.9796 0.97962227 2560 Q96SZ5 ADO 2-aminoethanethiol dioxygenase yes yes 0 0 0 1 By MS/MS 5 0 1 1 33.995 33.947 4 3.2494E-17 8274 20211116_3433_TMUAki_TMT10x_P_F5 147.49 132.34 472450 737230 0 740910 941840 926410 542710 402430 476570 428570 590770 439900 687920 44904 758370 892990 920550 569310 436390 491770 417490 566360 1 1 0 1 1 1 1 1 1 1 1 472450 737230 0 740910 941840 926410 542710 402430 476570 428570 590770 439900 687920 44904 758370 892990 920550 569310 436390 491770 417490 566360 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72597000 72597000 0 17832 2560 16380 90485 109423 109423 1 SRDEDNDEDEERLEEEEQNEEEEVDN Unmodified 3223.2305 0.23048522 2927 Q9NRF9 POLE3 DNA polymerase epsilon subunit 3 yes yes 0 0 0 2 By MS/MS By MS/MS 1 0 3 1 2 43.379 43.247 3;4 3.6859E-88 11298 20211116_3428_TMUAki_TMT10x_P_F1 273.33 268.17 2466700 4329400 39911 6125400 2708900 3245500 2099300 1753200 2680100 2054000 2856200 2296900 4046500 206720 6079000 2583300 3450400 2179300 1866900 2707400 1993600 2749800 6 6 2 6 6 6 6 6 6 6 6 1338000 2199500 12135 3053400 2261000 2765600 1647900 831650 1277300 972060 1321700 1245800 2055500 122140 3050400 2152400 2791700 1692200 947370 1317300 943580 1273600 2 2 1 2 2 2 2 2 2 2 2 1128700 2130000 27776 3071900 447910 479920 451370 921590 1402800 1081900 1534600 1051100 1991000 84585 3028600 430940 658720 487120 919520 1390100 1050100 1476300 4 4 1 4 4 4 4 4 4 4 4 1609700000 1064000000 545670000 17833 2927 16381 90486;90487;90488 109424;109425;109426;109427;109428;109429 109425 6 SRDIFDCLEGAAR Unmodified 1508.7042 0.70417569 3328 Q9Y5U2;Q9Y5U2-2 TSSC4 Protein TSSC4 yes no 0 0 0 1 By MS/MS By MS/MS 4.4 0.49 3 2 3 2 52.36 52.514 3 2.8912E-18 15406 20211116_3431_TMUAki_TMT10x_P_F4 147.12 125.06 4115400 6910500 103270 7685000 4255800 3863800 3867300 5416600 5251800 5123000 5847300 3832600 6451100 439400 7728100 4077200 4206800 3985900 5420000 5303400 5015500 5622200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4115400 6910500 103270 7685000 4255800 3863800 3867300 5416600 5251800 5123000 5847300 3832600 6451100 439400 7728100 4077200 4206800 3985900 5420000 5303400 5015500 5622200 2 2 2 2 2 2 2 2 2 2 2 616640000 199020000 417620000 17834 3328 16382 90489;90490;90491;90492;90493 109430;109431;109432;109433 109430 4 SRDLLVQQASQCLSK Unmodified 1731.8938 0.89376737 1874 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 48.243 48.183 3 7.9384E-30 13230 20211116_3428_TMUAki_TMT10x_P_F1 202.93 177.56 25952000 45531000 420990 54574000 33960000 34889000 23516000 41404000 35548000 36638000 40388000 24167000 42519000 2641000 54742000 32324000 36904000 24772000 41625000 35810000 35979000 38811000 8 8 7 8 8 8 8 8 8 8 8 8169000 13363000 133990 16419000 19473000 21218000 12681000 12562000 10766000 10875000 11996000 7607000 12480000 945360 16606000 18508000 21125000 13158000 13158000 11080000 10690000 11534000 3 3 2 3 3 3 3 3 3 3 3 17783000 32169000 287000 38155000 14487000 13671000 10836000 28842000 24783000 25763000 28392000 16560000 30039000 1695600 38135000 13816000 15778000 11614000 28466000 24730000 25288000 27277000 5 5 5 5 5 5 5 5 5 5 5 6508900000 4005000000 2503900000 17835 1874 16383 90494;90495;90496;90497 109434;109435;109436;109437;109438;109439;109440;109441 109435 8 SRDSFLKR Unmodified 1007.5512 0.55122751 1052 P46778 RPL21 60S ribosomal protein L21 yes yes 0 0 0 2 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 29.573 29.523 4 0.0075753 7389 20211116_3429_TMUAki_TMT10x_P_F2 83.783 51.463 624660 1004200 3718.6 820380 970380 1145600 752510 838390 802500 759470 920380 581630 936300 57960 854770 925060 1140100 776240 865550 818400 744990 884210 3 3 2 3 3 3 3 3 3 3 3 454730 708570 3656.5 574900 753650 957470 570130 602740 592920 564770 651160 423410 660670 43159 601650 718100 943840 588610 629590 604260 553150 626350 2 2 1 2 2 2 2 2 2 2 2 169930 295580 62.101 245490 216730 188110 182370 235650 209580 194700 269220 158220 275620 14802 253120 206960 196240 187630 235960 214140 191840 257860 1 1 1 1 1 1 1 1 1 1 1 25430000 21870000 3559400 17836 1052 16384 90498;90499;90500 109442;109443;109444 109443 3 SRDYNPYNYSDSISPFNK Unmodified 2165.9654 0.96541199 308 O75122;O75122-3 CLASP2 CLIP-associating protein 2 yes no 0 0 0 1 By MS/MS 8 0 1 1 55.849 55.795 3 5.7786E-11 15966 20211116_3447_TMUAki_TMT10x_S_F8 123.55 107.29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17837 308 16385 90501 109445 109445 1 SREAIDSPVSFLALHNQIR Unmodified 2152.1389 0.1389001 2376 Q92900;Q92900-2 UPF1 Regulator of nonsense transcripts 1 yes no 0 0 0 1 By MS/MS By matching 3.33 3.3 2 1 2 1 54.57 54.51 4 1.0541E-23 15842 20211116_3428_TMUAki_TMT10x_P_F1 167.14 147.59 5297100 8659100 69700 9847600 7995700 11625000 7047400 6961800 7351800 7057800 7740700 4932600 8084300 528830 9988800 7646200 11629000 7207500 7316500 7479700 6889000 7455200 3 3 2 3 3 3 3 3 3 3 3 5297100 8659100 69700 9847600 7995700 11625000 7047400 6961800 7351800 7057800 7740700 4932600 8084300 528830 9988800 7646200 11629000 7207500 7316500 7479700 6889000 7455200 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1661700000 1187300000 474370000 17838 2376 16386 90502;90503;90504 109446;109447;109448 109446 3 SREDAGDNDDTEGAIGVR Unmodified 1875.8195 0.81947604 2779 Q9H0S4;Q9H0S4-2 DDX47 Probable ATP-dependent RNA helicase DDX47 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 30.414 30.447 3 5.1873E-103 6190 20211116_3428_TMUAki_TMT10x_P_F1 344.39 320.46 164480 267360 0 261950 400270 205950 180220 144840 162450 117520 247890 153140 249460 15277 266770 378160 211890 193760 149530 169070 115900 236490 2 2 0 2 2 2 2 2 2 2 2 81800 124110 0 123950 310750 132530 84915 70752 84836 56966 118180 76160 115810 9468.9 126590 292250 133100 97939 74641 87493 56204 112970 1 1 0 1 1 1 1 1 1 1 1 82684 143250 0 137990 89517 73419 95301 74091 77609 60551 129710 76978 133650 5808.5 140180 85905 78792 95818 74892 81577 59695 123520 1 1 0 1 1 1 1 1 1 1 1 39364000 23956000 15409000 17839 2779 16387 90505;90506 109449;109450 109449 2 SREDEDALEQAR Unmodified 1417.6433 0.64334957 299 O60885 BRD4 Bromodomain-containing protein 4 yes yes 0 0 0 1 By MS/MS 1 0 1 1 29.274 29.355 3 0.030243 7728 20211116_3439_TMUAki_TMT10x_S_F1 50.806 37.089 69859 132770 1926.9 151690 74542 58543 86563 51556 60352 56969 97416 65060 123960 7653.2 152020 71894 65228 86364 52934 63860 55416 92827 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 69859 132770 1926.9 151690 74542 58543 86563 51556 60352 56969 97416 65060 123960 7653.2 152020 71894 65228 86364 52934 63860 55416 92827 1 1 1 1 1 1 1 1 1 1 1 2560600 0 2560600 17840 299 16388 90507 109451 109451 1 SREDMIDIK Oxidation (M) 1121.5387 0.53867349 742;743 P20340;P20340-3;P20340-2;P20340-4 RAB6A Ras-related protein Rab-6A no no 0 0 1 1 By matching By MS/MS 2.5 0.5 1 1 1 1 33.548 33.317 3 0.029896 10332 20211116_3441_TMUAki_TMT10x_S_F3 55.649 19.689 338900 524040 945.6 611280 292030 409510 373810 428560 542640 387550 546720 315550 489310 28322 614430 282130 430050 380120 433540 544800 380190 527270 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 338900 524040 945.6 611280 292030 409510 373810 428560 542640 387550 546720 315550 489310 28322 614430 282130 430050 380120 433540 544800 380190 527270 1 1 1 1 1 1 1 1 1 1 1 64133000 26573000 37559000 17841 742;743 16389 90508;90509 109452 109452 853 1 SREDMIDIK Unmodified 1105.5438 0.54375887 742;743 P20340;P20340-3;P20340-2;P20340-4 RAB6A Ras-related protein Rab-6A no no 0 0 0 1 By MS/MS 4 0 1 1 37.014 37.146 3 0.044396 9691 20211116_3442_TMUAki_TMT10x_S_F4 48.741 13.23 407040 608760 29814 777580 399000 436200 492120 432960 436100 452950 677480 379210 568670 61420 776230 386720 465360 492580 440960 454670 441550 646070 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 407040 608760 29814 777580 399000 436200 492120 432960 436100 452950 677480 379210 568670 61420 776230 386720 465360 492580 440960 454670 441550 646070 1 1 1 1 1 1 1 1 1 1 1 9319000 0 9319000 17842 742;743 16389 90510 109453 109453 1 SREIFLSQPILLELEAPLK Unmodified 2195.2566 0.25655562 1333;1334;957 P62140;P36873;P36873-2;P62136;P62136-2 PPP1CB;PPP1CC;PPP1CA Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit no no 0 0 0 1 By MS/MS By MS/MS 7.25 0.829 1 1 2 2 2 79.041 79.043 3 7.3304E-18 25401 20211116_3447_TMUAki_TMT10x_S_F8 154.26 137.58 24992000 40114000 126300 43308000 28081000 27723000 29835000 13309000 12386000 15812000 26336000 23269000 37442000 2035000 43723000 26964000 28879000 29631000 14334000 13859000 15340000 24974000 4 4 2 4 4 4 4 4 4 4 4 9983300 16171000 126300 17371000 9387200 14842000 10830000 5454200 5812500 6370600 10515000 9296400 15094000 937040 17598000 9044900 15065000 10755000 6046600 6299700 6184100 9997800 2 2 2 2 2 2 2 2 2 2 2 15009000 23942000 0 25938000 18693000 12880000 19005000 7854900 6573100 9441500 15821000 13973000 22348000 1098000 26125000 17919000 13814000 18876000 8287400 7559200 9155700 14976000 2 2 0 2 2 2 2 2 2 2 2 4045700000 1193800000 2851800000 17843 1334;957;1333 16390 90511;90512;90513;90514 109454;109455;109456;109457 109457 4 SREQSSEAAETGVSENEENPVR Unmodified 2404.0739 0.073852823 1875 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 30.149 30.094 3 3.0447E-115 7982 20211116_3439_TMUAki_TMT10x_S_F1 351.41 332.11 261680 417540 2529.1 594660 896680 602910 356610 310500 546790 241560 478740 243650 390270 28342 594270 846210 607120 395850 328390 545520 238760 463930 4 4 1 4 4 4 4 4 4 4 4 226970 358410 2529.1 461080 843920 578960 316390 234500 394640 207360 363560 211350 334810 26485 464880 796010 574800 350930 254990 396950 203640 351680 3 3 1 3 3 3 3 3 3 3 3 34706 59131 0 133590 52761 23947 40220 76001 152150 34199 115170 32304 55454 1856.9 129380 50192 32329 44917 73394 148580 35123 112250 1 1 0 1 1 1 1 1 1 1 1 93980000 68221000 25759000 17844 1875 16391 90515;90516;90517 109458;109459;109460;109461 109461 4 SREWDMEALR Unmodified 1291.5979 0.5979197 1536 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 1 By MS/MS 3 0 1 1 40.536 40.59 3 2.3385E-06 12122 20211116_3430_TMUAki_TMT10x_P_F3 142.71 105.11 211800 317240 15695 396900 553840 398220 383680 206200 238840 214950 319350 197330 296320 36978 399300 527720 401290 393590 219610 252180 209570 305580 1 1 1 1 1 1 1 1 1 1 1 211800 317240 15695 396900 553840 398220 383680 206200 238840 214950 319350 197330 296320 36978 399300 527720 401290 393590 219610 252180 209570 305580 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21026000 21026000 0 17845 1536 16392 90518 109462 109462 1 SREYQLNDSAAYYLNDLDR Unmodified 2305.0611 0.061103292 1394 P63096;P63096-2 GNAI1 Guanine nucleotide-binding protein G(i) subunit alpha-1 yes no 0 0 0 1 By MS/MS 4 0 2 2 59.019 59.15 3 3.388E-22 18100 20211116_3431_TMUAki_TMT10x_P_F4 148.69 141.81 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17846 1394 16393 90519;90520 109463;109464 109463 2 SREYQLNDSASYYLNDLDR Unmodified 2321.056 0.056017914 563 P08754 GNAI3 Guanine nucleotide-binding protein G(k) subunit alpha yes yes 0 0 0 1 By MS/MS By MS/MS 3.8 0.748 2 2 1 3 2 56.96 56.891 3 6.2567E-58 17177 20211116_3431_TMUAki_TMT10x_P_F4 238.8 231.35 14547000 25721000 311090 25772000 20303000 25014000 17179000 16705000 17832000 16565000 19559000 13546000 24000000 1426700 26277000 19398000 25343000 17609000 17399000 18174000 16184000 18815000 9 9 5 9 9 9 9 9 9 9 9 8747000 15094000 150720 15297000 13092000 19170000 11019000 10018000 10802000 9685500 11129000 8144500 14085000 803920 15649000 12503000 19084000 11279000 10637000 11010000 9473100 10726000 5 5 2 5 5 5 5 5 5 5 5 5799900 10627000 160370 10475000 7211000 5844200 6159300 6687000 7030100 6879800 8430200 5401300 9915400 622830 10628000 6895800 6258300 6329600 6762100 7163500 6711200 8088900 4 4 3 4 4 4 4 4 4 4 4 3094600000 1627600000 1467000000 17847 563 16394 90521;90522;90523;90524;90525 109465;109466;109467;109468;109469;109470;109471;109472;109473 109467 9 SRFQTLVAQAVDK Unmodified 1461.794 0.79397698 1626 Q13394;Q9Y586 MAB21L1;MAB21L2 Protein mab-21-like 1;Protein mab-21-like 2 yes no 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 54.883 54.759 3 8.352E-05 17575 20211116_3429_TMUAki_TMT10x_P_F2 95.822 60.935 2128200 3528200 0 3404300 3557600 5354200 2771800 3040900 2763100 2530600 3206400 1981300 3291700 169130 3510900 3389600 5282300 2852300 3193200 2827000 2492500 3079400 1 1 0 1 1 1 1 1 1 1 1 2128200 3528200 0 3404300 3557600 5354200 2771800 3040900 2763100 2530600 3206400 1981300 3291700 169130 3510900 3389600 5282300 2852300 3193200 2827000 2492500 3079400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517140000 517140000 0 17848 1626 16395 90526;90527 109474 109474 1 SRGCAVVEFK Unmodified 1151.5757 0.5757277 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 1 By MS/MS By MS/MS 5.33 2.27 2 1 1 2 3 4 2 10 5 35.453 35.57 3 3.9305E-05 8885 20211116_3433_TMUAki_TMT10x_P_F5 128.08 101.48 6977400 10010000 60118 11150000 9685400 8218800 6752100 4675200 5519000 5209300 7498700 6497000 9344700 660810 11251000 9215900 8474000 6964200 4948200 5738800 5065700 7172400 9 9 8 9 9 9 9 9 9 9 9 4530100 6310500 47782 7086100 7048800 6424900 4108500 3058500 3630300 3322600 4755300 4218400 5891300 455390 7164300 6687700 6510400 4306400 3287500 3754100 3234200 4552500 4 4 4 4 4 4 4 4 4 4 4 2447300 3699600 12335 4064200 2636500 1793900 2643600 1616700 1888600 1886700 2743400 2278700 3453500 205420 4086400 2528200 1963600 2657800 1660700 1984700 1831500 2620000 5 5 4 5 5 5 5 5 5 5 5 468900000 341520000 127380000 17849 1171 16396 90528;90529;90530;90531;90532;90533;90534;90535;90536;90537;90538;90539;90540;90541;90542 109475;109476;109477;109478;109479;109480;109481;109482;109483;109484;109485;109486;109487 109476 13 SRGEQEGDEEEEGHIVDAEAEEGDADASDAK Unmodified 3273.3301 0.33013968 438 O95602 POLR1A DNA-directed RNA polymerase I subunit RPA1 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 4 2 2 37.971 37.928 4;5 4.2775E-98 11127 20211116_3439_TMUAki_TMT10x_S_F1 273.93 260.23 1488200 2449400 29666 4343200 3180900 3097100 1756800 2678500 3611500 1726000 2606300 1385800 2292600 156650 4278400 3014800 3222600 1913900 2716000 3557300 1724900 2545300 3 3 1 3 3 3 3 3 3 3 3 712960 1228200 29666 2289300 2962300 2893800 1668400 1253800 1810500 813880 1301100 663990 1150000 109380 2269600 2809100 2873900 1764400 1344400 1817600 813010 1270900 2 2 1 2 2 2 2 2 2 2 2 775280 1221100 0 2053900 218570 203350 88384 1424700 1801000 912110 1305200 721780 1142600 47267 2008900 205710 348750 149480 1371600 1739700 911930 1274500 1 1 0 1 1 1 1 1 1 1 1 595240000 376930000 218310000 17850 438 16397 90543;90544;90545;90546 109488;109489;109490 109490 3 SRGFAFVTFESPADAK Unmodified 1728.8471 0.84713476 969 P38159;Q96E39;P38159-3;O75526;Q8N7X1 RBMX;RBMXL1;RBMXL2;RBMXL3 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1;RNA-binding motif protein, X-linked-like-2;RNA-binding motif protein, X-linked-like-3 yes no 0 0 0 1 By MS/MS By MS/MS 6.56 2.11 1 2 2 4 5 4 58.722 58.958 2;3;4 5.2014E-22 19427 20211116_3446_TMUAki_TMT10x_S_F7 178 152.41 72910000 117820000 615220 115040000 87244000 108030000 77795000 67414000 78675000 73550000 88650000 67885000 109930000 6135900 117450000 83409000 109570000 79432000 70775000 80354000 71580000 85208000 11 11 6 11 11 11 11 11 11 11 11 46151000 72249000 281820 68631000 53643000 88491000 53284000 47034000 52131000 48689000 55688000 42969000 67402000 3720900 70567000 51412000 87992000 54031000 49962000 53211000 47484000 53611000 8 8 5 8 8 8 8 8 8 8 8 26759000 45574000 333390 46410000 33602000 19535000 24511000 20380000 26543000 24861000 32961000 24916000 42528000 2415000 46885000 31997000 21577000 25401000 20812000 27142000 24096000 31598000 3 3 1 3 3 3 3 3 3 3 3 20323000000 13197000000 7125800000 17851 969 16398 90547;90548;90549;90550;90551;90552;90553;90554;90555 109491;109492;109493;109494;109495;109496;109497;109498;109499;109500;109501;109502;109503 109500 13 SRGFAFVYFENVDDAK Unmodified 1863.8792 0.87916317 1389 P62995;P62995-3 TRA2B Transformer-2 protein homolog beta yes no 0 0 0 1 By MS/MS 6 0 1 1 65.432 65.428 3 0.016421 19804 20211116_3434_TMUAki_TMT10x_P_F6 48.677 37.063 3589900 6475400 50100 5792700 4217400 7996700 4523700 4532600 4075100 4150600 4580500 3343000 6039700 353110 5990600 4054600 7932700 4558700 4771800 4183300 4069400 4403000 1 1 1 1 1 1 1 1 1 1 1 3589900 6475400 50100 5792700 4217400 7996700 4523700 4532600 4075100 4150600 4580500 3343000 6039700 353110 5990600 4054600 7932700 4558700 4771800 4183300 4069400 4403000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 380840000 380840000 0 17852 1389 16399 90556 109504 109504 1 SRGFAFVYFER Unmodified 1377.683 0.68296996 1650 Q13595;Q13595-4;Q13595-3;Q13595-2 TRA2A Transformer-2 protein homolog alpha yes no 0 0 0 1 By MS/MS 3 0 1 1 56.028 55.633 3 0.053678 19430 20211116_3441_TMUAki_TMT10x_S_F3 50.314 42.389 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17853 1650 16400 90557 109505 109505 1 SRGFGFILFK Unmodified 1170.655 0.6549643 2601 Q99729-3;Q99729-2;Q99729;Q99729-4 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 0 0 0 1 By MS/MS By MS/MS 6.75 0.829 2 1 1 2 2 65.521 65.637 3 8.8494E-05 20478 20211116_3436_TMUAki_TMT10x_P_F8 87.568 60.431 33002000 54834000 274720 46812000 57297000 34703000 32286000 44793000 38088000 39795000 42343000 30730000 51136000 3332400 48142000 54327000 36326000 34237000 44884000 38645000 39072000 40715000 5 5 5 5 5 5 5 5 5 5 5 3291200 5555800 46472 4704400 4354200 8171600 4373800 4533900 3901700 4088700 4251900 3064800 5181000 331060 4911300 4178300 8029100 4420900 4780000 4002400 4011600 4090900 1 1 1 1 1 1 1 1 1 1 1 29711000 49279000 228250 42108000 52943000 26531000 27913000 40259000 34187000 35707000 38092000 27666000 45955000 3001400 43230000 50149000 28297000 29816000 40104000 34643000 35060000 36625000 4 4 4 4 4 4 4 4 4 4 4 2427000000 349630000 2077400000 17854 2601 16401 90558;90559;90560;90561 109506;109507;109508;109509;109510;109511 109507 6 SRGFGFVLFK Unmodified 1156.6393 0.63931423 1675;151;152 O14979;O14979-3;O14979-2;Q14103;Q14103-3;Q14103-4;Q14103-2 HNRNPDL;HNRNPD Heterogeneous nuclear ribonucleoprotein D-like;Heterogeneous nuclear ribonucleoprotein D0 no no 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 61.912 62.314 3 9.3285E-05 20202 20211116_3435_TMUAki_TMT10x_P_F7 119.03 89.681 40596000 66697000 10690 56597000 68693000 78971000 48498000 60266000 42638000 39248000 53448000 37797000 62198000 3559900 58786000 65345000 78650000 50068000 61589000 44017000 39198000 51224000 3 3 1 3 3 3 3 3 3 3 3 30810000 48283000 0 42666000 43911000 71750000 41176000 44596000 31221000 29100000 39965000 28685000 45032000 2528600 44358000 42022000 70690000 41601000 46249000 32508000 29059000 38282000 2 2 0 2 2 2 2 2 2 2 2 9786400 18414000 10690 13931000 24781000 7221200 7322400 15670000 11417000 10148000 13483000 9112200 17166000 1031300 14429000 23323000 7960300 8467100 15340000 11509000 10139000 12942000 1 1 1 1 1 1 1 1 1 1 1 5399700000 3538600000 1861100000 17855 151;152;1675 16402 90562;90563;90564 109512;109513;109514 109513 3 SRGFGFVTFENIDDAK Unmodified 1801.8635 0.8635131 1673 Q14011;Q14011-2 CIRBP Cold-inducible RNA-binding protein yes no 0 0 0 1 By MS/MS 6 0 1 1 63.652 63.619 3 6.3057E-06 19446 20211116_3445_TMUAki_TMT10x_S_F6 100.04 85.765 3475700 5561800 0 5909700 4384500 2978800 3690300 3027100 3291100 3237900 3834500 3235900 5191100 252710 5960500 4183500 3216500 3767100 3081700 3384900 3153600 3682200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3475700 5561800 0 5909700 4384500 2978800 3690300 3027100 3291100 3237900 3834500 3235900 5191100 252710 5960500 4183500 3216500 3767100 3081700 3384900 3153600 3682200 1 1 0 1 1 1 1 1 1 1 1 400480000 0 400480000 17856 1673 16403 90565 109515 109515 1 SRGFGFVTFSSMAEVDAAMAARPHSIDGR 2 Oxidation (M) 3101.4447 0.44473689 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 2 2 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 55.24 55.179 5 3.1698E-06 18302 20211116_3439_TMUAki_TMT10x_S_F1 72.514 60.08 9912900 16468000 196310 16299000 12521000 17612000 11192000 13704000 13608000 10926000 13571000 9231300 15366000 1026100 16659000 11983000 17773000 11497000 14047000 13737000 10785000 13092000 4 4 3 4 4 4 4 4 4 4 4 7489900 12131000 140840 11946000 10028000 15286000 8876700 9683300 9690200 7656300 9776500 6974800 11319000 772500 12250000 9594200 15241000 9089400 10067000 9825600 7561000 9428400 2 2 1 2 2 2 2 2 2 2 2 2423000 4337000 55476 4353200 2492600 2325800 2315000 4020300 3917600 3269800 3794200 2256500 4046900 253560 4409600 2388900 2532500 2407100 3979600 3911000 3224400 3664000 2 2 2 2 2 2 2 2 2 2 2 2114500000 1529800000 584710000 17857 772 16404 90566;90567;90568 109516;109517;109518;109519 109519 898;899 4 SRGFGFVTYATVEEVDAAMNARPHK Oxidation (M) 2768.334 0.33404745 583 P09651;P09651-2;P09651-3 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes no 0 0 1 2 By MS/MS By MS/MS 5.71 3.01 2 2 3 4 3 56.936 57.11 4;5 1.8062E-11 16981 20211116_3436_TMUAki_TMT10x_P_F8 110.14 94.634 37451000 62703000 295020 55298000 50587000 73613000 45745000 61768000 64687000 56262000 55169000 34871000 58481000 2345500 57210000 48383000 73596000 47240000 63234000 64641000 55176000 53514000 13 13 5 13 13 13 13 13 13 13 13 21328000 35262000 94747 31293000 28970000 54732000 29498000 35154000 39071000 33240000 30724000 19857000 32888000 1281100 32555000 27780000 53871000 30190000 36673000 39033000 32543000 29897000 7 7 1 7 7 7 7 7 7 7 7 16123000 27442000 200270 24005000 21616000 18882000 16246000 26614000 25616000 23022000 24445000 15014000 25593000 1064400 24655000 20603000 19725000 17050000 26562000 25608000 22633000 23618000 6 6 4 6 6 6 6 6 6 6 6 13526000000 7774300000 5751900000 17858 583 16405 90569;90570;90571;90572;90573;90574;90575 109520;109521;109522;109523;109524;109525;109526;109527;109528;109529;109530;109531;109532 109524 550 13 SRGFGFVTYATVEEVDAAMNARPHK Unmodified 2752.3391 0.33913283 583 P09651;P09651-2;P09651-3 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes no 0 0 0 2 By MS/MS By MS/MS 3.8 3.06 2 1 1 1 2 3 67.144 67.156 5 2.2991E-22 20893 20211116_3428_TMUAki_TMT10x_P_F1 141.45 129.1 31028000 49313000 417440 48046000 36464000 33145000 33745000 22988000 19412000 23851000 33772000 28892000 46009000 2810500 48882000 34906000 34457000 33928000 23911000 20885000 23259000 32134000 6 6 5 6 6 6 6 6 6 6 6 9188400 13580000 48465 13129000 8734800 14292000 10916000 6187300 5576200 6511300 8978600 8555700 12670000 800600 13443000 8433200 14306000 10794000 6709500 6027300 6345900 8556000 2 2 2 2 2 2 2 2 2 2 2 21840000 35733000 368980 34917000 27730000 18853000 22829000 16800000 13836000 17340000 24793000 20336000 33340000 2009900 35439000 26473000 20151000 23134000 17201000 14858000 16913000 23578000 4 4 3 4 4 4 4 4 4 4 4 5095100000 2276500000 2818600000 17859 583 16405 90576;90577;90578;90579;90580 109533;109534;109535;109536;109537;109538 109533 6 SRGPATVEDLPSAFEEK Unmodified 1831.8952 0.89520716 140 O14908;O14908-2 GIPC1 PDZ domain-containing protein GIPC1 yes no 0 0 0 1 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 52.174 52.25 3 1.3636E-07 15724 20211116_3442_TMUAki_TMT10x_S_F4 108.75 81.106 21732000 38440000 291920 41229000 29003000 34482000 23133000 28736000 27884000 26571000 31292000 20236000 35879000 2146900 41762000 27678000 35415000 23919000 29442000 28280000 26040000 30081000 7 7 6 7 7 7 7 7 7 7 7 9382700 16629000 38048 17222000 16075000 22450000 13312000 12147000 11943000 11062000 13159000 8736300 15519000 878360 17606000 15345000 22317000 13605000 12838000 12253000 10848000 12656000 3 3 2 3 3 3 3 3 3 3 3 12349000 21811000 253870 24006000 12928000 12032000 9821500 16589000 15941000 15509000 18133000 11500000 20360000 1268500 24156000 12333000 13098000 10314000 16604000 16027000 15191000 17424000 4 4 4 4 4 4 4 4 4 4 4 1473600000 606700000 866870000 17860 140 16406 90581;90582;90583;90584 109539;109540;109541;109542;109543;109544;109545 109543 7 SRINLPAPNPDHVGGYK Unmodified 1833.9486 0.94858014 3141 Q9UJS0;Q9UJS0-2 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes no 0 0 0 1 By MS/MS By MS/MS 8 0 3 2 1 39.034 39.319 4 2.9409E-05 9603 20211116_3436_TMUAki_TMT10x_P_F8 87.287 70.209 2533300 4278100 55954 5412800 4985700 4300100 2895900 3416700 3900100 3210700 3972200 2359200 3996200 295140 5425200 4731300 4429500 3077800 3512300 3926300 3144300 3829600 4 4 2 4 4 4 4 4 4 4 4 1276100 2073400 8144.1 2637400 3941300 3293700 1928800 1803500 2097600 1615200 1940100 1188200 1936800 149330 2660500 3728900 3281400 2066900 1903300 2120900 1585300 1876400 3 3 1 3 3 3 3 3 3 3 3 1257200 2204700 47810 2775400 1044400 1006400 967100 1613200 1802500 1595500 2032100 1171000 2059300 145810 2764600 1002400 1148000 1010900 1609100 1805300 1559000 1953200 1 1 1 1 1 1 1 1 1 1 1 324440000 219600000 104840000 17861 3141 16407 90585;90586;90587 109546;109547;109548;109549 109547 4 SRKESYSIYVYK Unmodified 1521.7827 0.78274359 528 P33778;Q16778;P23527;P06899;Q6DRA6;Q6DN03 HIST1H2BB;HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST2H2BD;HIST2H2BC Histone H2B type 1-B;Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Putative histone H2B type 2-D;Putative histone H2B type 2-C yes no 0 0 0 2 By MS/MS By MS/MS 2.7 1.9 2 4 3 1 5 5 40.244 40.183 3;4 2.5275E-09 11590 20211116_3429_TMUAki_TMT10x_P_F2 157.52 131.47 7514800 13221000 34312 9952300 24165000 18205000 10623000 27314000 17155000 15261000 16472000 6996500 12325000 796910 10507000 22826000 18241000 11685000 26950000 17142000 15401000 15911000 11 11 4 11 11 11 11 11 11 11 11 3557300 6343600 11382 4631700 10767000 13450000 6446900 12783000 8661900 7277100 7489000 3311700 5912900 334130 4977900 10211000 13144000 6833900 12866000 8673500 7334000 7260700 5 5 1 5 5 5 5 5 5 5 5 3957500 6877700 22931 5320600 13398000 4754100 4175700 14531000 8492800 7983800 8983000 3684800 6411800 462780 5529400 12614000 5097800 4851400 14085000 8468400 8067100 8650400 6 6 3 6 6 6 6 6 6 6 6 3182200000 2143700000 1038500000 17862 528 16408 90588;90589;90590;90591;90592;90593;90594;90595;90596;90597 109550;109551;109552;109553;109554;109555;109556;109557;109558;109559;109560;109561 109552 12 SRKESYSVYVYK Unmodified 1507.7671 0.76709352 290;2613 Q93079;Q99877;P62807;P58876;O60814;Q5QNW6;Q99879;Q5QNW6-2;P57053;Q99880 HIST1H2BH;HIST1H2BN;HIST1H2BC;HIST1H2BD;HIST1H2BK;HIST2H2BF;HIST1H2BM;H2BFS;HIST1H2BL Histone H2B type 1-H;Histone H2B type 1-N;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type 2-F;Histone H2B type 1-M;Histone H2B type F-S;Histone H2B type 1-L no no 0 0 0 2 By MS/MS By MS/MS 1.75 0.661 3 4 1 3 5 37.73 37.641 3;4 6.7729E-07 10610 20211116_3429_TMUAki_TMT10x_P_F2 124.62 80.321 6329600 11193000 92627 7168700 23502000 22741000 11245000 28987000 17620000 15203000 14890000 5893200 10429000 731720 7830300 22225000 22347000 12245000 28744000 17549000 15416000 14448000 9 9 4 9 9 9 9 9 9 9 9 4137900 7338000 81755 4408600 14202000 19935000 8700000 19729000 11712000 10016000 9594400 3852800 6836100 486130 4936600 13479000 19346000 9205700 19779000 11708000 10182000 9320900 4 4 2 4 4 4 4 4 4 4 4 2191700 3854900 10872 2760100 9300600 2806200 2545100 9257700 5907700 5187100 5295300 2040400 3593000 245590 2893800 8745700 3000900 3039000 8965100 5841200 5233700 5127100 5 5 2 5 5 5 5 5 5 5 5 3427700000 2605400000 822340000 17863 290;2613 16409 90598;90599;90600;90601;90602;90603;90604;90605 109562;109563;109564;109565;109566;109567;109568;109569;109570 109565 9 SRLDQELK Unmodified 987.53491 0.53490874 1054 P46781 RPS9 40S ribosomal protein S9 yes yes 0 0 0 1 By MS/MS 2 0 1 1 33.822 33.6 3 0.026136 8936 20211116_3429_TMUAki_TMT10x_P_F2 62.823 13.01 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17864 1054 16410 90606 109571 109571 1 SRLEVAEAEEEETSIK Unmodified 1818.8847 0.88470206 174 O15213 WDR46 WD repeat-containing protein 46 yes yes 0 0 0 1 By MS/MS By MS/MS 1.6 0.49 2 3 3 2 45.336 45.201 3 4.1638E-21 13660 20211116_3429_TMUAki_TMT10x_P_F2 164.8 121.4 2302500 4038100 30774 5003000 3457100 3848700 2515700 3803100 4029600 3359400 4011400 2143900 3771600 214660 5018500 3291600 3991000 2647800 3855700 4032500 3299300 3870200 3 3 2 3 3 3 3 3 3 3 3 988710 1630800 0 1931200 2471000 2806600 1574200 1687400 1737500 1540000 1644500 920420 1522800 81648 1962000 2345400 2780000 1648700 1767700 1757200 1510100 1589200 1 1 0 1 1 1 1 1 1 1 1 1313800 2407300 30774 3071800 986070 1042100 941500 2115700 2292100 1819400 2366900 1223500 2248700 133010 3056500 946230 1210900 999140 2088000 2275300 1789200 2280900 2 2 2 2 2 2 2 2 2 2 2 541030000 394480000 146550000 17865 174 16411 90607;90608;90609;90610;90611 109572;109573;109574;109575 109572 4 SRLEVTDDLEK Unmodified 1303.662 0.66195975 944 P35813;P35813-3;P35813-2 PPM1A Protein phosphatase 1A yes no 0 0 0 1 By MS/MS 3 0 1 1 41.303 41.001 3 1.9737E-05 13448 20211116_3441_TMUAki_TMT10x_S_F3 102.33 38.24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17866 944 16412 90612 109576 109576 1 SRLGDLYEEEMR Unmodified 1496.6929 0.6929423 561 P08670 VIM Vimentin yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 44.222 44.087 3 1.3785E-06 11615 20211116_3428_TMUAki_TMT10x_P_F1 119.32 95.94 9920300 16289000 16437 18407000 13911000 13948000 10927000 11775000 10938000 10364000 12941000 9236600 15207000 856350 18562000 13262000 14435000 11240000 12040000 11198000 10181000 12422000 6 6 2 6 6 6 6 6 6 6 6 5522600 8747400 13642 9796600 10189000 10918000 7385400 5990800 5351500 5403300 6743500 5142200 8166200 527300 9936800 9699300 10943000 7575000 6322100 5582700 5301300 6462100 3 3 1 3 3 3 3 3 3 3 3 4397700 7541400 2795 8610200 3722500 3029900 3541900 5784400 5586500 4961200 6197400 4094500 7040900 329060 8624900 3563100 3492800 3665400 5717500 5615500 4879300 5959500 3 3 1 3 3 3 3 3 3 3 3 1133700000 783360000 350290000 17867 561 16413 90613;90614;90615;90616;90617;90618 109577;109578;109579;109580;109581;109582 109577 6 SRLGDLYEEEMR Oxidation (M) 1512.6879 0.68785692 561 P08670 VIM Vimentin yes yes 0 0 1 1 By MS/MS By MS/MS 2.25 0.661 1 4 3 3 5 36.915 36.89 2;3 5.1118E-07 8602 20211116_3440_TMUAki_TMT10x_S_F2 135.28 114.95 5447400 8194900 132500 9426800 8402600 9694800 7031100 5388900 6370000 5202700 7073100 5073100 7651300 562580 9533900 8030300 9763200 7183200 5690800 6534300 5088900 6801400 7 7 3 7 7 7 7 7 7 7 7 3880500 5556400 122720 6498500 6893300 8218700 5616400 3573300 3936100 3380700 4934200 3614000 5188200 476980 6588700 6584800 8162100 5711700 3861800 4113300 3309700 4728900 3 3 2 3 3 3 3 3 3 3 3 1567000 2638500 9786.3 2928300 1509400 1476200 1414700 1815600 2433900 1822000 2138900 1459100 2463100 85609 2945200 1445500 1601000 1471400 1829100 2421000 1779200 2072500 4 4 1 4 4 4 4 4 4 4 4 987260000 562800000 424460000 17868 561 16413 90619;90620;90621;90622;90623;90624;90625;90626 109583;109584;109585;109586;109587;109588;109589 109586 528 7 SRLNQSQREELGLIEQAYDNPHEALSR Unmodified 3152.5599 0.5599013 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 2 By MS/MS 4.5 0.5 1 1 2 52.042 52.174 5 1.3002E-12 15779 20211116_3442_TMUAki_TMT10x_S_F4 114.83 102.63 3269500 5758000 158090 6024800 2785100 2711700 2567500 4815700 5029200 4400600 4698500 3045400 5373800 411620 6077900 2674600 3014100 2691900 4777700 4996900 4315000 4542700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3269500 5758000 158090 6024800 2785100 2711700 2567500 4815700 5029200 4400600 4698500 3045400 5373800 411620 6077900 2674600 3014100 2691900 4777700 4996900 4315000 4542700 2 2 2 2 2 2 2 2 2 2 2 1124300000 0 1124300000 17869 1997 16414 90627;90628 109590;109591 109590 2 SRNITYLPAGQSVLLQLPQ Unmodified 2097.1582 0.15823856 924 P35232 PHB Prohibitin yes yes 0 0 0 1 By MS/MS By MS/MS 2.8 0.4 1 4 3 2 74.379 74.177 2;3 4.0043E-56 26941 20211116_3441_TMUAki_TMT10x_S_F3 246.51 236.26 11752000 19157000 43934 17952000 12725000 16702000 14092000 8968200 8530800 9022400 12737000 10941000 17871000 863760 18381000 12228000 16918000 14050000 9510200 9071200 8809500 12156000 5 5 2 5 5 5 5 5 5 5 5 8120600 13107000 43934 11870000 7267300 13402000 9672100 6320300 6099800 6528100 8450100 7561000 12226000 656420 12220000 7028400 13400000 9574500 6789600 6445300 6367100 8078800 3 3 2 3 3 3 3 3 3 3 3 3631600 6050200 0 6081700 5457700 3299100 4419600 2648000 2431000 2494300 4286500 3380400 5645600 207340 6160500 5199300 3517900 4475700 2720500 2626000 2442400 4077600 2 2 0 2 2 2 2 2 2 2 2 2610900000 1274400000 1336400000 17870 924 16415 90629;90630;90631;90632;90633 109592;109593;109594;109595;109596 109596 5 SRNPDFLLHIIQR Unmodified 1607.8896 0.8896087 2190 Q8N201 INTS1 Integrator complex subunit 1 yes yes 0 0 0 1 By MS/MS 3 0 1 1 52.707 52.334 4 2.4825E-07 18104 20211116_3441_TMUAki_TMT10x_S_F3 120.9 102.3 475430 813750 14726 965710 452770 451950 435280 555810 477150 535770 625490 442780 759880 52823 966770 434590 494440 443730 559270 488850 524090 598790 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 475430 813750 14726 965710 452770 451950 435280 555810 477150 535770 625490 442780 759880 52823 966770 434590 494440 443730 559270 488850 524090 598790 1 1 1 1 1 1 1 1 1 1 1 123400000 0 123400000 17871 2190 16416 90634 109597 109597 1 SRNTDEMVELR Oxidation (M) 1364.6354 0.63542742 1329;1330 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 1 1 By MS/MS By MS/MS 2.25 1.48 4 1 1 1 1 6 2 26.73 26.667 3 3.534E-07 6543 20211116_3429_TMUAki_TMT10x_P_F2 138 103.23 448020 786720 6991.1 630420 692940 816120 552200 649000 623310 540650 742920 417200 733510 46628 656950 661280 816200 569680 665050 635240 532490 712970 5 5 2 5 5 5 5 5 5 5 5 155100 256610 0 203200 322330 413840 208120 305790 254250 220330 287010 144410 239240 14882 214220 306170 406170 218510 313800 257800 218710 275850 2 2 0 2 2 2 2 2 2 2 2 292920 530120 6991.1 427210 370610 402280 344080 343210 369060 320320 455910 272790 494270 31747 442720 355110 410030 351170 351250 377440 313780 437120 3 3 2 3 3 3 3 3 3 3 3 76054000 53844000 22210000 17872 1329;1330 16417 90635;90636;90637;90638;90639;90640;90641;90642 109598;109599;109600;109601 109600 1786 4 SRNTDEMVELR Unmodified 1348.6405 0.6405128 1329;1330 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 32.367 32.132 3 1.4338E-05 8355 20211116_3429_TMUAki_TMT10x_P_F2 106.54 67.738 1213600 1985100 19293 2086900 2455600 2062500 2236500 1108700 1152600 1081800 1729700 1130100 1852700 135990 2121500 2350200 2081200 2246500 1174600 1240500 1057600 1650700 2 2 2 2 2 2 2 2 2 2 2 539930 831460 4029 889210 1654100 1385600 1246200 551610 535300 505820 739530 502760 776060 64123 910480 1576000 1362200 1263400 601560 582940 495900 707070 1 1 1 1 1 1 1 1 1 1 1 673680 1153700 15264 1197700 801520 676970 990300 557110 617330 575940 990150 627380 1076700 71869 1211000 774200 719080 983080 573050 657580 561720 943620 1 1 1 1 1 1 1 1 1 1 1 95986000 62276000 33710000 17873 1329;1330 16417 90643;90644 109602;109603 109602 2 SRNTVLQQHLETLR Unmodified 1693.9224 0.92236539 2879 Q9NP66 HMG20A High mobility group protein 20A yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 33.76 33.765 4 0.024664 7500 20211116_3428_TMUAki_TMT10x_P_F1 50.827 32.202 1134200 1812100 16155 2193000 2290600 1896300 1361600 1246000 1343700 1193100 1524000 1056100 1692300 125280 2205900 2174000 1935500 1429200 1298100 1374100 1167400 1464600 3 3 3 3 3 3 3 3 3 3 3 799300 1276900 5612.6 1526600 2009200 1669500 1051800 894890 998070 840990 1102200 744270 1192400 88443 1541900 1902700 1674600 1115300 947340 1021400 823580 1060000 2 2 2 2 2 2 2 2 2 2 2 334860 535190 10543 666430 281460 226790 309790 351130 345600 352110 421830 311870 499880 36840 664020 271230 260950 313860 350760 352720 343850 404570 1 1 1 1 1 1 1 1 1 1 1 42902000 16820000 26082000 17874 2879 16418 90645;90646 109604;109605;109606 109605 3 SRPEFMLPVHFYGK Oxidation (M) 1722.8552 0.85519702 521 P06737;P06737-2 PYGL Glycogen phosphorylase, liver form yes no 0 0 1 1 By MS/MS By matching 2 0 2 1 1 54.926 54.698 4 0.014683 17447 20211116_3429_TMUAki_TMT10x_P_F2 55.173 6.5481 1166900 1935100 15857 1702100 1911900 2976100 1385300 1884500 1995100 1792700 1655900 1086600 1804800 121960 1772000 1821000 2928700 1451600 1968400 1990900 1754600 1607900 1 1 1 1 1 1 1 1 1 1 1 1166900 1935100 15857 1702100 1911900 2976100 1385300 1884500 1995100 1792700 1655900 1086600 1804800 121960 1772000 1821000 2928700 1451600 1968400 1990900 1754600 1607900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 785280000 563210000 222080000 17875 521 16419 90647;90648 109607 109607 435 1 SRPELLEYYIK Unmodified 1409.7555 0.7554662 1702 Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 0 0 0 1 By MS/MS 7 0 1 1 56.346 56.872 3 0.038136 18620 20211116_3446_TMUAki_TMT10x_S_F7 55.604 29.245 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17876 1702 16420 90649 109608 109608 1 SRPFTVAASFQSTSVK Unmodified 1711.8893 0.88933392 3115 Q9UHB6;Q9UHB6-4;Q9UHB6-3;Q9UHB6-2;Q9UHB6-5 LIMA1 LIM domain and actin-binding protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 3.6 0.49 2 3 3 2 47.556 47.58 3;4 6.7316E-29 13835 20211116_3442_TMUAki_TMT10x_S_F4 185.14 166.31 11926000 20047000 88229 21683000 16856000 18871000 12013000 17546000 15569000 13770000 17270000 11105000 18712000 1140100 21963000 16046000 19368000 12549000 17793000 15744000 13604000 16607000 5 5 5 5 5 5 5 5 5 5 5 5187100 8380300 41280 8737500 10274000 13603000 7037500 9463600 7506500 6615200 7913200 4830000 7821100 539770 8961300 9772500 13465000 7322200 9745600 7630500 6578100 7621000 2 2 2 2 2 2 2 2 2 2 2 6739300 11667000 46950 12946000 6581900 5267700 4975600 8082500 8062500 7154900 9357000 6275300 10891000 600290 13002000 6273500 5903200 5226500 8047900 8113100 7026100 8986200 3 3 3 3 3 3 3 3 3 3 3 1286500000 877730000 408790000 17877 3115 16421 90650;90651;90652;90653;90654 109609;109610;109611;109612;109613;109614 109614 6 SRPGPSLQIQDLK Unmodified 1437.794 0.79397698 396 O94913 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 45.16 45.209 3 0.00012251 12189 20211116_3436_TMUAki_TMT10x_P_F8 92.65 58.271 3955800 6503000 88753 7679700 7358000 7553300 4188800 6604000 6557900 5303200 6212700 3683900 6072400 458330 7749600 6980900 7681300 4487900 6723500 6555600 5233000 6003800 2 2 2 2 2 2 2 2 2 2 2 2143000 3563300 60309 4282800 6146600 6271100 3149200 3694300 3704500 2937300 3586500 1995800 3327700 289950 4348100 5821900 6208000 3368300 3863500 3740200 2899900 3463400 1 1 1 1 1 1 1 1 1 1 1 1812800 2939700 28443 3396900 1211400 1282200 1039600 2909700 2853400 2365900 2626200 1688100 2744800 168380 3401500 1159000 1473300 1119600 2860000 2815400 2333100 2540400 1 1 1 1 1 1 1 1 1 1 1 219150000 130410000 88745000 17878 396 16422 90655;90656 109615;109616 109615 2 SRPPFDVVIDGLNVAK Unmodified 1725.9414 0.94136949 161 O15091;O15091-3;O15091-4;O15091-2 KIAA0391 Mitochondrial ribonuclease P protein 3 yes no 0 0 0 1 By MS/MS 8 0 1 1 68.695 68.546 3 2.0812E-05 21230 20211116_3447_TMUAki_TMT10x_S_F8 94.882 68.073 8691100 15584000 334360 14784000 10013000 9744600 9508700 7742300 6876800 7299400 10034000 8094700 14539000 1050700 15063000 9608700 10193000 9590000 7959700 7223100 7147200 9581200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8691100 15584000 334360 14784000 10013000 9744600 9508700 7742300 6876800 7299400 10034000 8094700 14539000 1050700 15063000 9608700 10193000 9590000 7959700 7223100 7147200 9581200 2 2 2 2 2 2 2 2 2 2 2 907580000 0 907580000 17879 161 16423 90657 109617;109618 109618 2 SRQELEQHSVDTASTSDAVTFITYVQSLK Unmodified 3239.5946 0.59461505 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 1 By MS/MS By matching 7 0.816 1 1 1 2 1 76.798 76.799 4 1.8794E-33 26483 20211116_3435_TMUAki_TMT10x_P_F7 165.47 132.75 2658400 4273300 0 3868100 2524600 5322400 2893300 2813500 2760200 3150700 3212400 2474700 3985900 147140 3996500 2425300 5276000 2911400 2997300 2829900 3063300 3084900 1 1 0 1 1 1 1 1 1 1 1 2658400 4273300 0 3868100 2524600 5322400 2893300 2813500 2760200 3150700 3212400 2474700 3985900 147140 3996500 2425300 5276000 2911400 2997300 2829900 3063300 3084900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2350800000 1412400000 938430000 17880 1695 16424 90658;90659;90660 109619 109619 1 SRQGSTQGRLDDFFK Unmodified 1740.8543 0.8543454 978 P39748;P39748-2 FEN1 Flap endonuclease 1 yes no 0 0 0 2 By MS/MS 8 0 1 1 39.865 40.099 4 0.0017657 9584 20211116_3447_TMUAki_TMT10x_S_F8 68.413 50.496 427600 800370 0 859890 643920 304520 328110 761750 675000 567140 791530 398130 747050 37858 864720 609440 354750 360070 745600 675650 561920 759950 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 427600 800370 0 859890 643920 304520 328110 761750 675000 567140 791530 398130 747050 37858 864720 609440 354750 360070 745600 675650 561920 759950 1 1 0 1 1 1 1 1 1 1 1 56591000 0 56591000 17881 978 16425 90661 109620 109620 1 SRSQGCSEQVLTVLK Unmodified 1690.8672 0.86721827 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 1 By MS/MS 7.5 0.5 1 1 2 42.878 43.171 3 3.8607E-07 12934 20211116_3446_TMUAki_TMT10x_S_F7 118.21 82.184 354340 562940 0 721230 292020 234000 218500 565490 518760 429610 542540 329900 525870 25041 717300 277920 275880 234770 554160 515450 425180 522630 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 354340 562940 0 721230 292020 234000 218500 565490 518760 429610 542540 329900 525870 25041 717300 277920 275880 234770 554160 515450 425180 522630 1 1 0 1 1 1 1 1 1 1 1 52217000 0 52217000 17882 1433 16426 90662;90663 109621 109621 1 SRVEEVDGSLVR Unmodified 1344.6997 0.69974224 1761 Q15047;Q15047-2;Q15047-3 SETDB1 Histone-lysine N-methyltransferase SETDB1 yes no 0 0 0 1 By MS/MS 2 0 1 1 33.294 33.072 3 0.00013211 8751 20211116_3429_TMUAki_TMT10x_P_F2 94.023 64.088 424600 646010 9814.7 679670 1001100 924220 571630 528850 578480 474260 614650 395420 602930 52423 694650 949660 917570 602490 556010 589490 465430 591810 1 1 1 1 1 1 1 1 1 1 1 424600 646010 9814.7 679670 1001100 924220 571630 528850 578480 474260 614650 395420 602930 52423 694650 949660 917570 602490 556010 589490 465430 591810 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29337000 29337000 0 17883 1761 16427 90664 109622 109622 1 SRVFDLQFSTDSPR Unmodified 1653.8111 0.8110836 1746 Q15003 NCAPH Condensin complex subunit 2 yes yes 0 0 0 1 By MS/MS 7 0 1 1 50.761 51.253 3 8.0732E-05 16342 20211116_3446_TMUAki_TMT10x_S_F7 94.454 78.635 10544000 16815000 313880 18500000 10121000 7597300 8900000 8418800 8045600 7893700 12552000 9820100 15697000 1160800 18591000 9692500 8430600 9065100 8502500 8382300 7731000 11969000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10544000 16815000 313880 18500000 10121000 7597300 8900000 8418800 8045600 7893700 12552000 9820100 15697000 1160800 18591000 9692500 8430600 9065100 8502500 8382300 7731000 11969000 2 2 2 2 2 2 2 2 2 2 2 218970000 0 218970000 17884 1746 16428 90665 109623;109624 109624 2 SRVGIQQGLLSQSTR Unmodified 1628.8958 0.89581629 2725 Q9BY77;Q9BY77-2 POLDIP3 Polymerase delta-interacting protein 3 yes no 0 0 0 1 By MS/MS 3 0 1 1 36.331 36.084 3 3.1E-19 11445 20211116_3441_TMUAki_TMT10x_S_F3 163.91 144.15 440980 693720 0 756190 382770 333780 341550 649800 721110 532200 631120 410560 647550 30944 760710 365670 373190 360360 641200 713800 524620 611610 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 440980 693720 0 756190 382770 333780 341550 649800 721110 532200 631120 410560 647550 30944 760710 365670 373190 360360 641200 713800 524620 611610 1 1 0 1 1 1 1 1 1 1 1 107280000 0 107280000 17885 2725 16429 90666 109625 109625 1 SRVITVDGNICTGK Unmodified 1518.7824 0.78242601 420 O95299;O95299-2 NDUFA10 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial yes no 0 0 0 1 By MS/MS 8 0 1 1 38.257 38.698 3 0.00016686 8833 20211116_3447_TMUAki_TMT10x_S_F8 85.742 61.755 169660 266830 3326 286890 197150 137960 169520 151230 157290 138450 188010 157990 249060 17550 289030 188540 150030 173020 152710 161640 135750 180410 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 169660 266830 3326 286890 197150 137960 169520 151230 157290 138450 188010 157990 249060 17550 289030 188540 150030 173020 152710 161640 135750 180410 1 1 1 1 1 1 1 1 1 1 1 9325100 0 9325100 17886 420 16430 90667 109626 109626 1 SRVTQSNFAVGYK Unmodified 1455.747 0.74702678 760 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 37.769 37.667 3 1.714E-11 10652 20211116_3429_TMUAki_TMT10x_P_F2 142.45 105.6 1993400 2970500 43846 4485700 4326000 2778900 2193000 2483200 2958100 2038100 2987400 1856400 2777400 238800 4443700 4097000 2929600 2359600 2526400 2976900 2008800 2880900 3 3 3 3 3 3 3 3 3 3 3 1091700 1525900 38523 2299800 3456400 2241300 1426300 1306200 1534100 1065700 1556800 1016800 1426700 159530 2290700 3265500 2265900 1556200 1368000 1556700 1050700 1501100 1 1 1 1 1 1 1 1 1 1 1 901720 1444600 5323.2 2185900 869540 537630 766670 1177100 1424000 972380 1430600 839630 1350700 79269 2153000 831490 663740 803400 1158400 1420100 958110 1379800 2 2 2 2 2 2 2 2 2 2 2 371440000 276010000 95425000 17887 760 16431 90668;90669;90670;90671 109627;109628;109629 109627 3 SRVVGNPFDSK Unmodified 1204.62 0.62003536 500 P05091;P05091-2 ALDH2 Aldehyde dehydrogenase, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 37.984 38.341 3 0.0082144 8764 20211116_3447_TMUAki_TMT10x_S_F8 62.042 38.924 863890 1492400 16366 1688300 1511200 1232400 995190 1042900 1131000 899020 1190200 804490 1393300 95941 1701700 1437000 1279400 1040700 1065600 1146700 883960 1146300 2 2 2 2 2 2 2 2 2 2 2 415850 753360 5413.3 782880 1100300 867790 582250 519900 573620 447170 557300 387240 703080 49109 797850 1042300 870990 617420 543980 583360 439730 538110 1 1 1 1 1 1 1 1 1 1 1 448040 739080 10953 905400 410870 364620 412940 522990 557350 451850 632910 417250 690260 46833 903820 394680 408370 423230 521620 563370 444230 608200 1 1 1 1 1 1 1 1 1 1 1 33399000 17897000 15502000 17888 500 16432 90672;90673 109630;109631 109631 2 SRWDETPASQMGGSTPVLTPGK Oxidation (M) 2317.1009 0.10085962 345 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 1 1 By MS/MS 6 0 1 1 46.328 46.492 3 3.6137E-05 12143 20211116_3445_TMUAki_TMT10x_S_F6 76.417 61.489 645450 1155700 5294.2 1661400 390030 431540 398800 591960 615010 576120 921840 601020 1080300 54869 1640800 374520 519090 410760 593300 627090 563320 879760 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 645450 1155700 5294.2 1661400 390030 431540 398800 591960 615010 576120 921840 601020 1080300 54869 1640800 374520 519090 410760 593300 627090 563320 879760 1 1 1 1 1 1 1 1 1 1 1 485790000 0 485790000 17889 345 16433 90674 109632 109632 256 1 SRYQDILVFR Unmodified 1295.6986 0.69862003 735 P19623 SRM Spermidine synthase yes yes 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 50.128 49.964 3 2.0027E-06 16073 20211116_3439_TMUAki_TMT10x_S_F1 145.28 120.89 7235900 12300000 72463 12864000 10078000 12023000 8257500 10367000 9795800 9538800 10115000 6737800 11479000 695440 13071000 9620700 12263000 8518700 10599000 9909500 9350200 9747500 4 4 3 4 4 4 4 4 4 4 4 3992300 6555100 40028 6871900 6326700 8876600 5343300 5638300 5258500 5018000 5248300 3717400 6117700 389190 7018100 6043200 8846400 5468800 5877500 5353000 4926400 5063200 2 2 1 2 2 2 2 2 2 2 2 3243600 5744600 32435 5992600 3750900 3146700 2914100 4728300 4537300 4520800 4866400 3020300 5361300 306250 6053400 3577500 3416700 3049900 4721400 4556500 4423800 4684300 2 2 2 2 2 2 2 2 2 2 2 1306000000 741300000 564730000 17890 735 16434 90675;90676;90677;90678 109633;109634;109635;109636 109635 4 SSAAEPPPPPPPESAPSKPAASIASGGSNSSNK Acetyl (Protein N-term) 3112.4949 0.49490101 260 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 1 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 46.198 46.369 4 1.3573E-27 12022 20211116_3444_TMUAki_TMT10x_S_F5 113.37 101.45 2311900 3983200 13798 6034600 4127500 4519500 2726200 3765000 4830100 3283700 4304700 2152600 3724400 216140 5988700 3922300 4680700 2903700 3851700 4803100 3226900 4168800 5 5 3 5 5 5 5 5 5 5 5 1098000 1966400 5466.4 2841200 3495200 3834500 2146800 1833700 2348500 1596500 2102800 1022200 1838100 116470 2851600 3316900 3800100 2254300 1958200 2371700 1569000 2036100 2 2 1 2 2 2 2 2 2 2 2 1214000 2016800 8332 3193400 632290 685010 579470 1931400 2481600 1687300 2201800 1130400 1886300 99671 3137200 605410 880580 649420 1893500 2431400 1657900 2132700 3 3 2 3 3 3 3 3 3 3 3 1701500000 763350000 938150000 17891 260 16435 90679;90680;90681 109637;109638;109639;109640;109641 109641 5 SSACFTLQELK Unmodified 1282.6227 0.62273747 1040 P46060 RANGAP1 Ran GTPase-activating protein 1 yes yes 0 0 0 0 By MS/MS 6 0 1 1 58.803 58.841 2 0.00022388 17503 20211116_3445_TMUAki_TMT10x_S_F6 96.957 69.336 4525700 8106700 0 8175100 5490400 3929000 4144200 4505100 3896600 4484300 5629700 4213700 7564600 373390 8271600 5229600 4277500 4266400 4550800 4036500 4380400 5377100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4525700 8106700 0 8175100 5490400 3929000 4144200 4505100 3896600 4484300 5629700 4213700 7564600 373390 8271600 5229600 4277500 4266400 4550800 4036500 4380400 5377100 1 1 0 1 1 1 1 1 1 1 1 344370000 0 344370000 17892 1040 16436 90682 109642 109642 1 SSAEVIAQAR Unmodified 1030.5407 0.5407224 1852 Q16555;Q16555-2 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 1.41 3 1 2 1 1 4 4 32.532 32.423 2;3 1.251E-18 9951 20211116_3441_TMUAki_TMT10x_S_F3 240 162.27 9109900 14106000 60534 14334000 11152000 12616000 9403700 7630000 7981400 7626700 10904000 8482200 13163000 789220 14581000 10649000 12846000 9585900 8009200 8285600 7448700 10429000 7 7 3 7 7 7 7 7 7 7 7 6771400 10121000 53258 10336000 9212500 10501000 6665400 5375400 5738600 5502100 7944400 6304900 9444900 609590 10532000 8770200 10573000 6865500 5727800 5956800 5368400 7595400 4 4 2 4 4 4 4 4 4 4 4 2338500 3984800 7276.5 3997300 1939100 2114800 2738200 2254700 2242800 2124500 2960000 2177300 3718300 179630 4048900 1878800 2273700 2720400 2281400 2328800 2080300 2833200 3 3 1 3 3 3 3 3 3 3 3 1263900000 575940000 687980000 17893 1852 16437 90683;90684;90685;90686;90687;90688;90689;90690 109643;109644;109645;109646;109647;109648;109649;109650;109651 109650 9 SSALREEVQSLREEAEK Unmodified 1959.9861 0.98614743 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 2 By MS/MS By MS/MS 3.62 1 2 4 4 3 6 7 50.746 50.728 3;4 1.2704E-35 15098 20211116_3442_TMUAki_TMT10x_S_F4 208.59 143.29 74228000 117610000 839510 128230000 103500000 113860000 83775000 96312000 94716000 88872000 100310000 69117000 109780000 6880800 129850000 98765000 116480000 86347000 98587000 96078000 87104000 96596000 18 18 14 18 18 18 18 18 18 18 18 37321000 58456000 411840 64276000 62695000 80630000 51456000 49004000 47234000 46376000 50269000 34750000 54567000 3433800 65405000 59832000 80421000 52651000 51341000 48345000 45401000 48398000 8 8 6 8 8 8 8 8 8 8 8 36907000 59155000 427670 63955000 40804000 33228000 32319000 47309000 47482000 42497000 50045000 34367000 55216000 3447000 64447000 38933000 36062000 33696000 47246000 47732000 41703000 48197000 10 10 8 10 10 10 10 10 10 10 10 8595900000 4546400000 4049500000 17894 1741 16438 90691;90692;90693;90694;90695;90696;90697;90698;90699;90700;90701;90702;90703 109652;109653;109654;109655;109656;109657;109658;109659;109660;109661;109662;109663;109664;109665;109666;109667;109668;109669 109665 18 SSAQDPQAVLGALGR Unmodified 1468.7634 0.76340513 820 P26640 VARS Valine--tRNA ligase yes yes 0 0 0 0 By MS/MS By MS/MS 5.75 0.661 3 4 1 3 5 55.58 55.683 2;3 7.8852E-34 16114 20211116_3445_TMUAki_TMT10x_S_F6 234.71 204.46 72416000 127130000 0 128510000 104690000 119850000 77025000 107940000 107890000 96517000 101100000 67414000 118630000 4918800 130870000 99590000 122360000 80532000 110000000 108170000 94734000 97741000 8 8 0 8 8 8 8 8 8 8 8 32183000 57407000 0 58469000 70019000 90313000 48367000 52463000 52751000 47004000 46455000 29960000 53571000 2510600 60049000 66548000 89191000 50329000 55088000 53250000 46131000 45008000 4 4 0 4 4 4 4 4 4 4 4 40233000 69723000 0 70040000 34675000 29533000 28658000 55475000 55136000 49513000 54649000 37454000 65060000 2408100 70824000 33042000 33168000 30203000 54916000 54916000 48603000 52733000 4 4 0 4 4 4 4 4 4 4 4 3396400000 1612000000 1784300000 17895 820 16439 90704;90705;90706;90707;90708;90709;90710;90711 109670;109671;109672;109673;109674;109675;109676;109677;109678;109679;109680 109677 11 SSAQGKPLALK Unmodified 1098.6397 0.63970816 1040 P46060 RANGAP1 Ran GTPase-activating protein 1 yes yes 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 36.316 36.33 3 0.066122 8359 20211116_3440_TMUAki_TMT10x_S_F2 47.189 20.591 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17896 1040 16440 90712;90713 109681;109682 109682 2 SSASAPDVDDPEAFPALA Unmodified 1758.7948 0.79482442 2232 Q8NC51;Q8NC51-3;Q8NC51-2;Q8NC51-4 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 0 0 0 0 By MS/MS By MS/MS 2.08 0.954 4 4 3 1 5 7 73.44 73.299 2;3 2.3976E-23 25451 20211116_3439_TMUAki_TMT10x_S_F1 169.65 155.5 48280000 82407000 342090 76733000 53088000 80204000 52759000 47631000 48771000 51411000 58039000 44951000 76873000 3812000 78733000 50878000 80760000 53410000 50185000 50120000 50055000 55702000 19 19 6 19 19 19 19 19 19 19 19 26552000 43789000 273600 40815000 25589000 56484000 28871000 25558000 26339000 28826000 31435000 24723000 40848000 2239000 42082000 24621000 55880000 29035000 27644000 27087000 28019000 30167000 9 9 4 9 9 9 9 9 9 9 9 21728000 38618000 68496 35918000 27499000 23720000 23888000 22073000 22432000 22585000 26604000 20229000 36025000 1573000 36651000 26257000 24880000 24375000 22541000 23032000 22037000 25535000 10 10 2 10 10 10 10 10 10 10 10 20220000000 10140000000 10080000000 17897 2232 16441 90714;90715;90716;90717;90718;90719;90720;90721;90722;90723;90724;90725 109683;109684;109685;109686;109687;109688;109689;109690;109691;109692;109693;109694;109695;109696;109697;109698;109699;109700;109701 109692 19 SSAVDPEPQVKLEDVLPLAFTR Unmodified 2410.2744 0.27439053 1930 Q5SSJ5;Q5SSJ5-2;Q5SSJ5-3 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 1 By MS/MS By MS/MS 5.5 0.957 1 2 2 1 3 3 77.976 77.987 3 2.2233E-14 25003 20211116_3444_TMUAki_TMT10x_S_F5 133.95 115.42 23672000 40692000 77893 35926000 34784000 39561000 33941000 31424000 27117000 31458000 34243000 22039000 37952000 1886500 37041000 33316000 39895000 34261000 32362000 28139000 30722000 32813000 5 5 2 5 5 5 5 5 5 5 5 9734900 16160000 76833 14732000 10318000 20566000 13867000 12220000 10283000 13366000 13765000 9063400 15074000 722510 15218000 9976600 20404000 13769000 12880000 10742000 13007000 13171000 2 2 1 2 2 2 2 2 2 2 2 13937000 24532000 1060 21193000 24466000 18995000 20074000 19204000 16834000 18092000 20478000 12976000 22878000 1164000 21824000 23339000 19491000 20491000 19481000 17397000 17715000 19642000 3 3 1 3 3 3 3 3 3 3 3 6482200000 2933300000 3549000000 17898 1930 16442 90726;90727;90728;90729;90730;90731 109702;109703;109704;109705;109706 109704 5 SSAVPPGLPVYLDLCYIPNHSNSK Unmodified 2627.3054 0.30537308 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS 1.33 0.471 2 1 3 74.445 74.397 3;4 1.5871E-22 23917 20211116_3428_TMUAki_TMT10x_P_F1 148.52 142.23 21379000 33599000 122310 30633000 19154000 38215000 21882000 19780000 20215000 21223000 23254000 19905000 31340000 1409200 31573000 18432000 38049000 22002000 21085000 20746000 20668000 22338000 6 6 2 6 6 6 6 6 6 6 6 21379000 33599000 122310 30633000 19154000 38215000 21882000 19780000 20215000 21223000 23254000 19905000 31340000 1409200 31573000 18432000 38049000 22002000 21085000 20746000 20668000 22338000 6 6 2 6 6 6 6 6 6 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2395000000 2395000000 0 17899 1057 16443 90732;90733;90734 109707;109708;109709;109710;109711;109712 109707 6 SSAVVELDLEGTR Unmodified 1374.6991 0.69907354 1893 Q4G0J3;Q4G0J3-3 LARP7 La-related protein 7 yes no 0 0 0 0 By matching By MS/MS 2.5 0.5 1 1 1 1 53.44 53.127 2 0.00097249 18472 20211116_3441_TMUAki_TMT10x_S_F3 80.737 61.643 1220800 2064100 0 2204500 1250000 1082500 1030000 1613700 1403700 1537000 1710600 1136300 1926500 63194 2222300 1190600 1184000 1067900 1611600 1422600 1504300 1640700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1220800 2064100 0 2204500 1250000 1082500 1030000 1613700 1403700 1537000 1710600 1136300 1926500 63194 2222300 1190600 1184000 1067900 1611600 1422600 1504300 1640700 1 1 0 1 1 1 1 1 1 1 1 190020000 80968000 109060000 17900 1893 16444 90735;90736 109713 109713 1 SSAYESLMEIVK Oxidation (M) 1371.6592 0.65918256 1739 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 1 0 By MS/MS By MS/MS 5.33 0.816 2 2 5 4 5 62.877 62.902 2;3 1.933E-11 18597 20211116_3434_TMUAki_TMT10x_P_F6 130.75 110.96 135950000 233600000 11701000 246820000 129380000 220390000 181360000 231420000 228600000 248830000 228790000 126670000 218020000 22009000 250470000 126070000 226390000 182710000 235260000 230500000 242300000 220700000 7 7 4 7 7 7 7 7 7 7 7 10962000 16039000 0 13483000 11916000 17694000 11220000 11057000 9691700 10545000 13492000 10207000 14956000 847260 13998000 11404000 17616000 11370000 11561000 10061000 10320000 12897000 2 2 0 2 2 2 2 2 2 2 2 124990000 217560000 11701000 233340000 117460000 202690000 170140000 220370000 218910000 238280000 215300000 116460000 203060000 21162000 236470000 114660000 208780000 171340000 223700000 220440000 231980000 207800000 5 5 4 5 5 5 5 5 5 5 5 2829700000 1538900000 1290800000 17901 1739 16445 90737;90738;90739;90740;90741;90742;90743;90744;90745 109714;109715;109716;109717;109718;109719;109720 109716 2345 7 SSAYESLMEIVK Unmodified 1355.6643 0.66426794 1739 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 0 By MS/MS By MS/MS 6 1.07 1 4 4 4 1 7 7 75.828 75.837 2;3 1.6779E-45 26467 20211116_3446_TMUAki_TMT10x_S_F7 273.44 211.48 53540000 84446000 349950 89844000 60028000 62126000 60669000 32308000 25940000 34552000 57475000 49852000 78818000 4573300 90860000 57577000 64330000 60430000 34421000 29028000 33653000 54468000 14 14 7 14 14 14 14 14 14 14 14 30071000 45117000 218200 48889000 31964000 43017000 35544000 19197000 15425000 19871000 31393000 28000000 42113000 2546400 49520000 30740000 43650000 35244000 20741000 17139000 19379000 29789000 8 8 4 8 8 8 8 8 8 8 8 23469000 39329000 131750 40955000 28064000 19109000 25125000 13111000 10515000 14681000 26082000 21852000 36704000 2026900 41340000 26836000 20680000 25187000 13680000 11889000 14273000 24678000 6 6 3 6 6 6 6 6 6 6 6 4926200000 2500900000 2425400000 17902 1739 16445 90746;90747;90748;90749;90750;90751;90752;90753;90754;90755;90756;90757;90758;90759 109721;109722;109723;109724;109725;109726;109727;109728;109729;109730;109731;109732;109733;109734;109735;109736 109736 16 SSDFEGYEQDFAVLTAEITSK Acetyl (Protein N-term) 2378.0802 0.080166979 2410 Q96AJ9;Q96AJ9-1 VTI1A Vesicle transport through interaction with t-SNAREs homolog 1A yes no 1 0 0 0 By MS/MS 1.5 0.5 1 1 2 84.844 84.844 3 7.1644E-06 28262 20211116_3428_TMUAki_TMT10x_P_F1 65.25 55.192 947330 1589300 18795 1358800 969160 1828300 1181100 1068700 1185100 1190000 1333100 882200 1482100 96362 1409500 935740 1816500 1187100 1128600 1210700 1157300 1281400 1 1 1 1 1 1 1 1 1 1 1 947330 1589300 18795 1358800 969160 1828300 1181100 1068700 1185100 1190000 1333100 882200 1482100 96362 1409500 935740 1816500 1187100 1128600 1210700 1157300 1281400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 174180000 174180000 0 17903 2410 16446 90760;90761 109737 109737 1 SSDNKLEETLTR Unmodified 1391.6892 0.68923713 2621 Q9BQ39 DDX50 ATP-dependent RNA helicase DDX50 yes yes 0 0 0 1 By MS/MS 4 0 1 1 38.422 38.603 3 0.031738 10216 20211116_3442_TMUAki_TMT10x_S_F4 50.102 32.666 316270 472220 0 595400 293050 235330 295050 416700 492350 368550 505810 294460 441090 23523 593320 280880 266020 305290 413070 492720 361920 487520 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 316270 472220 0 595400 293050 235330 295050 416700 492350 368550 505810 294460 441090 23523 593320 280880 266020 305290 413070 492720 361920 487520 1 1 0 1 1 1 1 1 1 1 1 14298000 0 14298000 17904 2621 16447 90762 109738 109738 1 SSEEIESAFR Unmodified 1153.5251 0.52513192 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 44.174 44.169 2 8.7885E-09 13533 20211116_3430_TMUAki_TMT10x_P_F3 140.88 115.14 889990 1315200 13607 2113200 614600 619000 645190 1508500 1630800 1185600 1576500 828770 1230200 82610 2077100 590900 742750 683360 1479200 1614000 1171200 1522500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 889990 1315200 13607 2113200 614600 619000 645190 1508500 1630800 1185600 1576500 828770 1230200 82610 2077100 590900 742750 683360 1479200 1614000 1171200 1522500 1 1 1 1 1 1 1 1 1 1 1 60564000 0 60564000 17905 1663 16448 90763;90764;90765 109739;109740;109741 109740 3 SSEFASIPANSSRPLSNISK Unmodified 2091.0596 0.059646729 3026 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 yes yes 0 0 0 1 By MS/MS 1 0 1 1 50.222 50.222 3 0.0050079 14110 20211116_3428_TMUAki_TMT10x_P_F1 56.748 32.19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17906 3026 16449 90766 109742 109742 1 SSEIEQAVQSLDR Unmodified 1460.7107 0.71070086 2620 Q9BPX5 ARPC5L Actin-related protein 2/3 complex subunit 5-like protein yes yes 0 0 0 0 By matching By MS/MS 3 0 2 1 1 61.154 60.807 2 0.00026386 21602 20211116_3441_TMUAki_TMT10x_S_F3 91.233 54.899 1693400 3029900 0 3430600 1474800 1520700 1544500 2015600 2088700 1905000 2200100 1576500 2828700 110740 3442900 1414100 1678100 1579900 2021100 2105100 1865100 2118900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1693400 3029900 0 3430600 1474800 1520700 1544500 2015600 2088700 1905000 2200100 1576500 2828700 110740 3442900 1414100 1678100 1579900 2021100 2105100 1865100 2118900 1 1 0 1 1 1 1 1 1 1 1 420280000 279900000 140380000 17907 2620 16450 90767;90768 109743 109743 1 SSEKNEDFAAHPGEDAVPTGPDCQAK Unmodified 2756.1984 0.19840141 1501 Q02952;Q02952-3;Q02952-2 AKAP12 A-kinase anchor protein 12 yes no 0 0 0 1 By MS/MS By matching 4.67 0.471 1 2 2 1 38.805 38.865 4 6.4789E-13 9938 20211116_3431_TMUAki_TMT10x_P_F4 120.08 110.62 802530 1260400 75960 2216200 6230300 5296100 2217500 3525700 3131400 1699200 2394700 747800 1179600 213350 2239400 5877700 5165600 2487400 3619400 3119500 1734800 2332900 2 2 2 2 2 2 2 2 2 2 2 802530 1260400 75960 2216200 6230300 5296100 2217500 3525700 3131400 1699200 2394700 747800 1179600 213350 2239400 5877700 5165600 2487400 3619400 3119500 1734800 2332900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 440490000 393120000 47374000 17908 1501 16451 90769;90770;90771 109744;109745 109744 2 SSELQAIKTELTQIK Unmodified 1687.9356 0.93561541 3158 Q9UKM9;Q9UKM9-2 RALY RNA-binding protein Raly yes no 0 0 0 1 By MS/MS By MS/MS 7.75 0.433 1 3 3 1 74.903 74.939 3;4 2.7207E-24 24401 20211116_3436_TMUAki_TMT10x_P_F8 195.6 105.19 54867000 89056000 901040 89160000 45838000 109390000 51225000 78933000 55112000 80910000 56437000 51091000 83099000 4457400 91253000 44119000 109500000 51794000 81849000 55944000 78940000 54401000 6 6 2 6 5 6 5 6 6 6 6 43211000 67889000 901040 68356000 35811000 91462000 41890000 58429000 44938000 60500000 46225000 40239000 63350000 3654500 70047000 34532000 91008000 42263000 61136000 45629000 59002000 44552000 4 4 2 4 3 4 3 4 4 4 4 11656000 21167000 0 20804000 10027000 17926000 9335300 20504000 10174000 20410000 10211000 10852000 19750000 802940 21206000 9587500 18497000 9531300 20714000 10315000 19938000 9849300 2 2 0 2 2 2 2 2 2 2 2 4186100000 2997600000 1188400000 17909 3158 16452 90772;90773;90774;90775 109746;109747;109748;109749;109750;109751 109749 6 SSEMNVLIPTEGGDFNEFPVPEQFK Oxidation (M) 2826.3058 0.30582659 1482 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 yes no 0 0 1 0 By MS/MS 4 0 1 1 78.402 78.415 3 0.0045293 26055 20211116_3431_TMUAki_TMT10x_P_F4 46.403 37.435 1905000 3125400 66803 2893800 1603700 2958900 1867400 1925500 1496300 1962500 2232300 1774200 2915500 215970 2969400 1548400 2987100 1868900 2011000 1564600 1915200 2130700 1 1 1 1 1 1 1 1 1 1 1 1905000 3125400 66803 2893800 1603700 2958900 1867400 1925500 1496300 1962500 2232300 1774200 2915500 215970 2969400 1548400 2987100 1868900 2011000 1564600 1915200 2130700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 967620000 967620000 0 17910 1482 16453 90776 109752 109752 2011 1 SSEMNVLIPTEGGDFNEFPVPEQFK Unmodified 2810.3109 0.31091197 1482 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 yes no 0 0 0 0 By MS/MS 5 1 1 1 2 79.376 79.36 3;4 1.553E-05 25850 20211116_3445_TMUAki_TMT10x_S_F6 72.033 58.785 2464600 4498000 36248 4622800 3261400 2493400 3488700 1817500 1565400 2095700 2756200 2295000 4197600 174830 4675400 3135100 2656300 3467300 1890300 1719000 2035300 2621900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2464600 4498000 36248 4622800 3261400 2493400 3488700 1817500 1565400 2095700 2756200 2295000 4197600 174830 4675400 3135100 2656300 3467300 1890300 1719000 2035300 2621900 2 2 1 2 2 2 2 2 2 2 2 1373900000 0 1373900000 17911 1482 16453 90777;90778 109753;109754 109754 2 SSENILTVHEQANVESLK Unmodified 1997.0065 0.006548526 1924 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.6 0.49 2 3 3 2 50.249 50.416 3 2.3865E-31 14996 20211116_3442_TMUAki_TMT10x_S_F4 186.97 163.17 8561900 14514000 83423 16634000 11788000 12665000 8807100 9949000 11651000 9836300 12707000 7972300 13551000 797520 16760000 11231000 13086000 9177300 10249000 11766000 9611200 12225000 5 5 3 5 5 5 5 5 5 5 5 3627000 5893400 49242 6587100 6773000 8303500 4687900 3980600 4827000 4023800 5187300 3377200 5501800 356190 6696600 6442600 8256000 4868500 4266600 4917300 3928100 4992800 2 2 1 2 2 2 2 2 2 2 2 4934900 8621000 34182 10047000 5014800 4361800 4119200 5968400 6824500 5812400 7519800 4595100 8049700 441330 10063000 4787900 4830200 4308800 5982500 6849000 5683100 7232500 3 3 2 3 3 3 3 3 3 3 3 1171400000 658820000 512580000 17912 1924 16454 90779;90780;90781;90782;90783 109755;109756;109757;109758;109759;109760 109758 6 SSENPNEVFR Unmodified 1177.5364 0.53636531 1036 P45974;P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 34.572 34.341 2 0.00014458 9251 20211116_3429_TMUAki_TMT10x_P_F2 120.22 80.222 1593200 2406100 0 3158800 4061500 2788400 1690300 1796500 2232400 1537500 2357900 1483300 2247900 149520 3163800 3833700 2841200 1855300 1868900 2251800 1512200 2270700 2 2 0 2 2 2 2 2 2 2 2 749930 1154400 0 1657400 3267400 2000000 921230 941760 1199400 745080 1208200 698180 1079000 87735 1660400 3073300 1992500 1065700 1005000 1208300 735790 1165200 1 1 0 1 1 1 1 1 1 1 1 843290 1251700 0 1501400 794130 788380 769060 854770 1032900 792390 1149700 785130 1168900 61784 1503400 760340 848630 789570 863850 1043400 776460 1105500 1 1 0 1 1 1 1 1 1 1 1 124320000 77137000 47184000 17913 1036 16455 90784;90785 109761;109762 109761 2 SSEPPPPPQPPTHQASVGLLDTPR Acetyl (Protein N-term) 2546.2765 0.2765158 3251 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 yes yes 1 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 51.586 51.456 2;3 1.403E-56 14905 20211116_3431_TMUAki_TMT10x_P_F4 158.65 142.86 4268400 7231900 63258 8877800 3543000 3475900 3073800 5375000 6100700 5321600 5902100 3974600 6754300 382670 8859800 3387900 3916900 3236100 5367500 6066900 5199600 5699700 5 5 3 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4268400 7231900 63258 8877800 3543000 3475900 3073800 5375000 6100700 5321600 5902100 3974600 6754300 382670 8859800 3387900 3916900 3236100 5367500 6066900 5199600 5699700 5 5 3 5 5 5 5 5 5 5 5 630920000 0 630920000 17914 3251 16456 90786;90787;90788 109763;109764;109765;109766;109767;109768 109763 6 SSEPVQLTEAETEYFVR Unmodified 1983.9426 0.94255129 3077 Q9UBF2;Q9UBF2-2 COPG2 Coatomer subunit gamma-2 yes no 0 0 0 0 By MS/MS By MS/MS 1.2 0.4 4 1 2 3 67.313 67.156 2;3 9.1261E-108 23044 20211116_3439_TMUAki_TMT10x_S_F1 357.91 333.84 12848000 21418000 110670 21926000 15555000 14504000 15699000 14355000 11397000 13133000 16413000 11963000 19987000 1057800 22221000 14915000 15230000 15784000 14566000 11960000 12877000 15678000 6 6 2 6 6 6 6 6 6 6 6 2333200 3574400 74098 3419100 2460400 4276400 3365400 2898600 2087900 2450700 2740700 2173000 3334700 264280 3511800 2386300 4272600 3326800 3003200 2203100 2412000 2623700 1 1 1 1 1 1 1 1 1 1 1 10515000 17843000 36572 18507000 13094000 10228000 12334000 11456000 9308700 10683000 13672000 9789900 16652000 793540 18709000 12529000 10957000 12457000 11563000 9757200 10465000 13054000 5 5 1 5 5 5 5 5 5 5 5 2452300000 776460000 1675800000 17915 3077 16457 90789;90790;90791;90792;90793 109769;109770;109771;109772;109773;109774;109775 109773 7 SSEPVVTMSVEYQMK 2 Oxidation (M) 1745.7852 0.78518771 719 P18583;P18583-3;P18583-5;P18583-6;P18583-10;P18583-4;P18583-7;P18583-9;P18583-2;P18583-8 SON Protein SON yes no 0 0 2 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 43.086 43.092 3 1.2295E-05 12018 20211116_3442_TMUAki_TMT10x_S_F4 99.991 88.198 1742100 2622300 23282 2954100 3079900 3566000 2146900 2454700 2718700 2161000 2526200 1622200 2448200 184410 2999400 2931100 3570100 2244200 2543100 2734000 2122700 2442900 3 3 2 3 3 3 3 3 3 3 3 1220200 1910800 14538 2153100 2603700 3070700 1743800 1726600 1839500 1455400 1825600 1136200 1783800 133630 2193100 2475800 3041400 1816800 1815200 1866700 1432600 1761500 2 2 1 2 2 2 2 2 2 2 2 521870 711590 8743.6 801040 476220 495380 403040 728120 879220 705670 700620 485970 664320 50776 806300 455310 528740 427390 727890 867280 690120 681390 1 1 1 1 1 1 1 1 1 1 1 353450000 211320000 142130000 17916 719 16458 90794;90795;90796;90797 109776;109777;109778 109778 823;824 3 SSEPVVTMSVEYQMK Oxidation (M) 1729.7903 0.79027308 719 P18583;P18583-3;P18583-5;P18583-6;P18583-10;P18583-4;P18583-7;P18583-9;P18583-2;P18583-8 SON Protein SON yes no 0 0 1 0 By MS/MS 4 0 2 2 53.012 53.06 3 0.0018792 16105 20211116_3442_TMUAki_TMT10x_S_F4 62.357 49.59 1683000 2784500 0 3007900 1451000 1329300 1392300 2040200 1808500 1791300 2291000 1567000 2599100 130960 3027700 1389500 1473700 1428200 2031000 1838800 1759700 2195100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1683000 2784500 0 3007900 1451000 1329300 1392300 2040200 1808500 1791300 2291000 1567000 2599100 130960 3027700 1389500 1473700 1428200 2031000 1838800 1759700 2195100 1 1 0 1 1 1 1 1 1 1 1 132750000 0 132750000 17917 719 16458 90798;90799 109779;109780 109779 823;824 2 SSEQILATLK Unmodified 1088.6077 0.60773933 3182 Q9UMS4 PRPF19 Pre-mRNA-processing factor 19 yes yes 0 0 0 0 By MS/MS By MS/MS 6.14 0.833 2 2 3 4 3 57.286 57.616 2;3 3.4391E-09 16549 20211116_3434_TMUAki_TMT10x_P_F6 179.2 85.65 15482000 22624000 83578 24621000 34198000 37262000 19866000 21820000 20324000 19252000 21428000 14415000 21118000 1526500 25165000 32429000 36834000 20914000 22887000 20695000 18908000 20636000 4 4 2 4 4 4 4 4 4 4 4 15482000 22624000 83578 24621000 34198000 37262000 19866000 21820000 20324000 19252000 21428000 14415000 21118000 1526500 25165000 32429000 36834000 20914000 22887000 20695000 18908000 20636000 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1298500000 1298500000 0 17918 3182 16459 90800;90801;90802;90803;90804;90805;90806 109781;109782;109783;109784;109785;109786;109787;109788 109783 8 SSFADISNLLQIEPR Unmodified 1688.8733 0.87334951 1829 Q15785 TOMM34 Mitochondrial import receptor subunit TOM34 yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 4 4 4 4 78.962 78.974 2;3 7.7363E-33 27846 20211116_3446_TMUAki_TMT10x_S_F7 196.95 158.17 32565000 51549000 102520 49428000 34801000 49859000 39208000 30307000 28701000 29222000 38494000 30316000 48093000 2030100 50581000 33435000 50327000 39215000 31769000 30006000 28585000 36831000 7 7 2 7 7 7 7 7 7 7 7 24098000 37220000 102520 36443000 23071000 40613000 26757000 22683000 20920000 21532000 27142000 22434000 34728000 1535300 37295000 22185000 40714000 26768000 23933000 21759000 21077000 25990000 5 5 2 5 5 5 5 5 5 5 5 8467200 14329000 0 12985000 11730000 9246200 12450000 7624500 7781200 7690200 11353000 7881800 13365000 494830 13286000 11249000 9613600 12447000 7835900 8247100 7508000 10841000 2 2 0 2 2 2 2 2 2 2 2 4870500000 2450600000 2419800000 17919 1829 16460 90807;90808;90809;90810;90811;90812;90813;90814 109789;109790;109791;109792;109793;109794;109795;109796 109796 8 SSFDEMLPGTHFQR Oxidation (M) 1666.741 0.74095513 1491 Q02218;Q02218-2 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 43.228 43.345 3 8.5692E-05 11750 20211116_3431_TMUAki_TMT10x_P_F4 90.156 77.176 4627500 8032800 72465 8701200 7330200 6687300 5256300 7129900 7439900 6301500 7437100 4308600 7498000 416720 8799400 6976100 6946700 5507800 7202100 7473100 6188500 7174400 4 4 3 4 4 4 4 4 4 4 4 1675100 2599600 36336 3428000 4016300 3776900 2216200 2445800 2509600 1917700 2510000 1559900 2428800 205530 3443800 3808000 3796200 2351200 2538100 2540200 1894700 2421300 2 2 2 2 2 2 2 2 2 2 2 2952400 5433300 36129 5273300 3313900 2910400 3040100 4684200 4930300 4383800 4927000 2748700 5069200 211190 5355600 3168100 3150600 3156500 4664000 4932900 4293800 4753000 2 2 1 2 2 2 2 2 2 2 2 659540000 420980000 238560000 17920 1491 16461 90815;90816;90817;90818;90819 109797;109798;109799;109800 109798 2025 4 SSFFIEPQKPVFPETR Unmodified 1907.9781 0.97814893 2507 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 64.315 64.478 3 2.3623E-35 22007 20211116_3439_TMUAki_TMT10x_S_F1 200.58 180.19 52437000 88505000 447080 83475000 61443000 84223000 63061000 68143000 63182000 65527000 69357000 48826000 82566000 4730400 85525000 58972000 85393000 63884000 70016000 64491000 64105000 66715000 8 8 6 8 8 8 8 8 8 8 8 24000000 39854000 215360 37773000 27725000 54140000 32714000 31373000 29726000 31335000 31756000 22347000 37180000 2117900 38926000 26714000 53633000 32830000 33045000 30444000 30605000 30571000 4 4 3 4 4 4 4 4 4 4 4 28437000 48651000 231720 45702000 33718000 30082000 30346000 36770000 33456000 34192000 37601000 26479000 45386000 2612500 46599000 32257000 31760000 31054000 36971000 34047000 33500000 36144000 4 4 3 4 4 4 4 4 4 4 4 6688200000 3454500000 3233700000 17921 2507 16462 90820;90821;90822;90823;90824;90825 109801;109802;109803;109804;109805;109806;109807;109808 109806 8 SSFFSDR Unmodified 844.37153 0.37153181 104 O00571;O00571-2 DDX3X ATP-dependent RNA helicase DDX3X yes no 0 0 0 0 By MS/MS By MS/MS 4 1 1 1 1 1 40.102 40.19 2 0.013539 11926 20211116_3430_TMUAki_TMT10x_P_F3 94.874 55.576 2693200 3848400 0 4604800 3429400 2592600 2431700 3172700 3621700 2558000 3656600 2507300 3593800 198730 4614100 3260900 2778300 2555600 3178100 3633600 2523600 3526300 2 2 0 2 2 2 2 2 2 2 2 496100 643040 0 737200 1268900 903330 482920 482290 522880 392460 624460 461810 600370 38124 747900 1196100 900540 532190 508920 533800 387000 599250 1 1 0 1 1 1 1 1 1 1 1 2197100 3205300 0 3867600 2160400 1689200 1948800 2690400 3098800 2165600 3032100 2045500 2993400 160600 3866200 2064800 1877700 2023400 2669100 3099800 2136600 2927000 1 1 0 1 1 1 1 1 1 1 1 103150000 17838000 85308000 17922 104 16463 90826;90827 109809;109810 109809 2 SSFLPSYIIDVR Unmodified 1395.7398 0.73981614 1558 Q10570 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 2 1 75.798 75.752 2 8.7876E-09 24651 20211116_3436_TMUAki_TMT10x_P_F8 149.23 111.64 9823600 17107000 124620 14761000 12022000 19664000 13327000 14219000 13883000 14489000 14079000 9147700 15954000 961380 15297000 11567000 19607000 13467000 14740000 14107000 14140000 13576000 3 3 3 3 3 3 3 3 3 3 3 6299300 10530000 48013 8788600 6191300 13850000 7816000 8521700 8181700 8234600 8150400 5865600 9819200 565490 9164600 5980300 13678000 7854500 8924600 8306400 8054200 7863300 2 2 2 2 2 2 2 2 2 2 2 3524300 6577000 76612 5971900 5830300 5813300 5511300 5697200 5701700 6254700 5928700 3282000 6134700 395890 6132700 5587000 5929400 5613000 5815100 5800200 6085700 5712200 1 1 1 1 1 1 1 1 1 1 1 927650000 513290000 414360000 17923 1558 16464 90828;90829;90830 109811;109812;109813;109814 109813 4 SSFLQVFNNSPDESSYYR Unmodified 2138.9545 0.95451296 1808 Q15436;Q15436-2 SEC23A Protein transport protein Sec23A yes no 0 0 0 0 By MS/MS By MS/MS 6.75 0.433 1 3 2 2 72.519 72.793 3 1.9361E-22 23198 20211116_3445_TMUAki_TMT10x_S_F6 157.84 147.05 2989500 5037700 37210 4234500 3349500 4997600 3652300 3576600 3251600 3517100 3841300 2783500 4697700 259980 4388000 3219800 5012200 3676500 3706400 3346400 3437500 3687300 2 2 1 2 2 2 2 2 2 2 2 1816000 2770400 0 2414700 1592300 3265800 1905200 2017400 1668300 1966300 1855700 1690700 2583800 119850 2501300 1532900 3246400 1908900 2112600 1714200 1922500 1784300 1 1 0 1 1 1 1 1 1 1 1 1173400 2267300 37210 1819700 1757200 1731800 1747100 1559300 1583300 1550900 1985600 1092800 2114000 140140 1886700 1686900 1765800 1767600 1593800 1632200 1515000 1903000 1 1 1 1 1 1 1 1 1 1 1 1087000000 522680000 564310000 17924 1808 16465 90831;90832;90833;90834 109815;109816;109817;109818 109817 4 SSFREEDNTYR Unmodified 1402.6113 0.61132116 241 O43747;O43747-2 AP1G1 AP-1 complex subunit gamma-1 yes no 0 0 0 1 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 29.227 29.058 3 9.0454E-08 7186 20211116_3429_TMUAki_TMT10x_P_F2 140.45 95.372 252000 446170 2505.2 406780 450630 384840 311100 254170 293580 259150 376480 234650 416180 25586 417440 428700 390460 322320 265170 302370 252900 360610 2 2 1 2 2 2 2 2 2 2 2 154970 257160 2505.2 246720 332470 287450 177470 152420 168790 153130 210110 144310 239920 17669 253040 315050 287290 187850 161810 173560 149530 201410 1 1 1 1 1 1 1 1 1 1 1 97026 189010 0 160060 118160 97382 133630 101750 124790 106020 166370 90337 176260 7917 164400 113660 103170 134470 103360 128810 103370 159200 1 1 0 1 1 1 1 1 1 1 1 18989000 13255000 5734200 17925 241 16466 90835;90836;90837 109819;109820 109819 2 SSFSFSAGTAVPSSASASLSQPVPR Unmodified 2424.1921 0.19211747 2005 Q6PCB5 RSBN1L Round spermatid basic protein 1-like protein yes yes 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 62.862 62.522 3 1.2012E-22 22239 20211116_3441_TMUAki_TMT10x_S_F3 143.47 126.4 1548900 2676500 28863 2508600 1890800 1460700 1815000 1744300 1550600 1487000 2005400 1442400 2496900 160100 2555300 1812800 1559000 1836800 1751500 1605200 1462900 1920500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1548900 2676500 28863 2508600 1890800 1460700 1815000 1744300 1550600 1487000 2005400 1442400 2496900 160100 2555300 1812800 1559000 1836800 1751500 1605200 1462900 1920500 1 1 1 1 1 1 1 1 1 1 1 634680000 0 634680000 17926 2005 16467 90838;90839 109821 109821 1 SSFSITR Unmodified 796.40792 0.40791731 3252 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 32.884 33.181 2 0.011455 6695 20211116_3447_TMUAki_TMT10x_S_F8 97.093 12.996 729520 1162800 5466.5 1234400 1176900 1130800 779720 718890 799940 719670 945670 679230 1085300 63248 1252700 1118200 1149200 812300 751740 818090 702840 907740 7 7 4 7 7 7 7 7 7 7 7 478840 777150 1489.6 826240 932810 936820 548120 476030 531720 467860 632900 445820 725350 43008 841090 884550 937190 575590 507010 545240 457270 607400 4 4 2 4 4 4 4 4 4 4 4 250690 385670 3976.9 408160 244050 194020 231600 242860 268220 251820 312770 233410 359950 20241 411600 233670 211960 236710 244730 272850 245570 300340 3 3 2 3 3 3 3 3 3 3 3 20828000 12144000 8684300 17927 3252 16468 90840;90841;90842;90843 109822;109823;109824;109825;109826;109827 109826 6 SSFTVDCSK Unmodified 1029.4437 0.44371047 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS 5 0 1 1 39.108 39.24 2 3.2228E-05 9241 20211116_3444_TMUAki_TMT10x_S_F5 116.3 86.957 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17928 755 16469 90844 109828 109828 1 SSFYPDGGDQETAK Unmodified 1500.6369 0.63686721 3018 Q9NYF8;Q9NYF8-2;Q9NYF8-4;Q9NYF8-3 BCLAF1 Bcl-2-associated transcription factor 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 42.918 42.964 3 0.0045643 13141 20211116_3430_TMUAki_TMT10x_P_F3 60.401 47.42 692690 1151200 0 1234000 2001700 1595400 977440 833510 944820 720560 982370 644780 1074500 52362 1258500 1892100 1585900 1044000 882520 963960 708390 946490 1 1 0 1 1 1 1 1 1 1 1 692690 1151200 0 1234000 2001700 1595400 977440 833510 944820 720560 982370 644780 1074500 52362 1258500 1892100 1585900 1044000 882520 963960 708390 946490 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37473000 37473000 0 17929 3018 16470 90845 109829 109829 1 SSFYVNGLTLGGQK Unmodified 1469.7514 0.75144346 540 P07737 PFN1 Profilin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 3 2.25 3 4 4 2 7 6 63.645 63.415 2;3 3.317E-134 21028 20211116_3429_TMUAki_TMT10x_P_F2 404.43 311 70468000 128820000 442570 116010000 110470000 178270000 85121000 134060000 109120000 104430000 108840000 65609000 120150000 5865300 120180000 105250000 176780000 88410000 137650000 109950000 103220000 105010000 12 12 5 12 12 12 12 12 12 12 12 47307000 85250000 229480 78184000 87343000 154220000 64887000 94014000 74167000 71276000 73232000 44042000 79521000 3881100 81396000 83145000 151060000 67279000 97945000 75013000 70549000 70673000 8 8 4 8 8 8 8 8 8 8 8 23162000 43565000 213090 37822000 23124000 24056000 20234000 40045000 34956000 33157000 35612000 21567000 40629000 1984200 38785000 22104000 25715000 21131000 39702000 34940000 32667000 34333000 4 4 1 4 4 4 4 4 4 4 4 22972000000 14516000000 8456700000 17930 540 16471 90846;90847;90848;90849;90850;90851;90852;90853;90854;90855;90856;90857;90858 109830;109831;109832;109833;109834;109835;109836;109837;109838;109839;109840;109841;109842;109843;109844;109845 109834 16 SSGEIVYCGQVFEK Unmodified 1601.7396 0.73955814 1495 Q02543 RPL18A 60S ribosomal protein L18a yes yes 0 0 0 0 By MS/MS By MS/MS 4.85 0.948 1 4 4 4 7 6 56.365 56.464 2;3 3.4264E-60 16116 20211116_3444_TMUAki_TMT10x_S_F5 296.96 249.7 103880000 170330000 554840 183270000 124360000 131570000 102810000 109980000 93691000 102520000 128060000 96718000 158980000 8265300 185280000 118660000 136740000 105130000 112680000 96933000 100430000 122470000 18 18 8 18 18 18 18 18 18 18 18 41763000 65751000 223680 71098000 65394000 83808000 52708000 43694000 39855000 41551000 51987000 38882000 61373000 3337800 72344000 62354000 83692000 53729000 46385000 41538000 40670000 49774000 8 8 2 8 8 8 8 8 8 8 8 62117000 104580000 331160 112170000 58970000 47766000 50105000 66282000 53836000 60970000 76070000 57836000 97612000 4927500 112930000 56309000 53050000 51402000 66298000 55394000 59765000 72693000 10 10 6 10 10 10 10 10 10 10 10 18707000000 10242000000 8465700000 17931 1495 16472 90859;90860;90861;90862;90863;90864;90865;90866;90867;90868;90869;90870;90871 109846;109847;109848;109849;109850;109851;109852;109853;109854;109855;109856;109857;109858;109859;109860;109861;109862;109863;109864 109859 19 SSGGREDLESSGLQR Unmodified 1576.7441 0.74412625 3151 Q9UK76;Q9UK76-2;Q9UK76-3 HN1 Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed yes no 0 0 0 1 By MS/MS By MS/MS 2.67 1.49 2 1 1 1 1 4 2 29.374 29.3 3 1.2084E-34 7254 20211116_3429_TMUAki_TMT10x_P_F2 237.18 166.09 743750 1284500 20000 1422400 2212300 1118200 926130 636580 783670 550310 1123400 692640 1199100 98985 1436800 2090000 1147100 1002300 668960 815540 541020 1073200 4 4 2 4 4 4 4 4 4 4 4 424440 726500 11350 817550 1852000 813030 561840 368210 473420 309910 648200 395280 678240 65340 827540 1744000 818550 634620 395070 491700 305080 619880 2 2 1 2 2 2 2 2 2 2 2 319310 557960 8650.3 604870 360320 305160 364290 268370 310250 240400 475240 297360 520810 33646 609270 346020 328530 367630 273880 323840 235940 453340 2 2 1 2 2 2 2 2 2 2 2 188940000 135570000 53366000 17932 3151 16473 90872;90873;90874;90875;90876;90877 109865;109866;109867;109868 109866 4 SSGLPNIPVQTISR Unmodified 1467.8045 0.80454166 480 P02786 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes yes 0 0 0 0 By MS/MS By MS/MS 4 3.46 4 3 3 4 54.072 53.984 2;3 8.2964E-61 15633 20211116_3428_TMUAki_TMT10x_P_F1 311.31 283.58 18553000 31776000 187870 34694000 24120000 27392000 18346000 24593000 24695000 21570000 25928000 17275000 29661000 1640800 35079000 22984000 28293000 19108000 25055000 24889000 21191000 24974000 10 10 5 10 10 10 10 10 10 10 10 8382800 13630000 58345 14714000 15106000 19349000 10950000 10261000 10664000 9164800 11137000 7805200 12722000 784600 15003000 14379000 19221000 11316000 10859000 10878000 8996000 10729000 4 4 2 4 4 4 4 4 4 4 4 10171000 18146000 129530 19980000 9014400 8042800 7396100 14332000 14031000 12406000 14791000 9470100 16939000 856230 20075000 8604700 9071100 7792200 14196000 14011000 12195000 14245000 6 6 3 6 6 6 6 6 6 6 6 2621900000 1567800000 1054100000 17933 480 16474 90878;90879;90880;90881;90882;90883;90884 109869;109870;109871;109872;109873;109874;109875;109876;109877;109878 109871 10 SSGPPPPSGSSGSEAAAGAGAAAPASQHPATGTGAVQTEAMK Oxidation (M) 3718.7129 0.71290906 1709 Q14444;Q14444-2 CAPRIN1 Caprin-1 yes no 0 0 1 0 By MS/MS 4.5 0.5 1 1 2 35.469 35.461 4 8.8316E-08 8903 20211116_3433_TMUAki_TMT10x_P_F5 71.244 61.617 105520 136780 1069.1 319570 441340 519450 160010 129280 265680 91165 143280 98255 128310 14448 316090 416170 508080 180290 149990 261320 90606 142000 1 1 1 1 1 1 1 1 1 1 1 105520 136780 1069.1 319570 441340 519450 160010 129280 265680 91165 143280 98255 128310 14448 316090 416170 508080 180290 149990 261320 90606 142000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 205740000 205740000 0 17934 1709 16475 90885;90886 109879 109879 2298 1 SSGPTSLFAVTVAPPGAR Unmodified 1713.905 0.90498399 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 By MS/MS By MS/MS 3.18 1.73 4 5 17 4 3 19 14 68.263 68.133 2;3 1.1152E-90 22019 20211116_3430_TMUAki_TMT10x_P_F3 332.41 293.63 117200000 197820000 1425700 182730000 137340000 182060000 138880000 149120000 146800000 145480000 154750000 109120000 184530000 9392300 187470000 131730000 184770000 141040000 153170000 149280000 142240000 149040000 45 45 25 45 45 45 45 45 45 45 45 59318000 95943000 385720 88928000 68413000 116060000 72056000 68377000 67447000 69797000 74785000 55229000 89499000 4078000 91623000 65675000 115490000 72757000 71970000 69078000 68109000 71915000 25 25 15 25 25 25 25 25 25 25 25 57877000 101880000 1040000 93806000 68924000 65995000 66828000 80740000 79352000 75687000 79965000 53892000 95035000 5314300 95852000 66058000 69279000 68283000 81196000 80200000 74128000 77121000 20 20 10 20 20 20 20 20 20 20 20 109350000000 55948000000 53399000000 17935 1474 16476 90887;90888;90889;90890;90891;90892;90893;90894;90895;90896;90897;90898;90899;90900;90901;90902;90903;90904;90905;90906;90907;90908;90909;90910;90911;90912;90913;90914;90915;90916;90917;90918;90919 109880;109881;109882;109883;109884;109885;109886;109887;109888;109889;109890;109891;109892;109893;109894;109895;109896;109897;109898;109899;109900;109901;109902;109903;109904;109905;109906;109907;109908;109909;109910;109911;109912;109913;109914;109915;109916;109917;109918;109919;109920;109921;109922;109923;109924;109925;109926;109927;109928;109929;109930 109886 51 SSGPYGGGGQYFAK Unmodified 1374.6204 0.62042929 583 P09651;P09651-2;P09651-3;Q32P51 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 2 4 4 5 5 45.386 45.634 2;3 1.3908E-60 13604 20211116_3435_TMUAki_TMT10x_P_F7 308.21 280.2 30563000 40602000 410970 96450000 72826000 51221000 34018000 31198000 44120000 25599000 49488000 28460000 38095000 3418100 93774000 68872000 54521000 36848000 32563000 44633000 25232000 47573000 12 12 9 12 12 12 12 12 12 12 12 16885000 22281000 313270 49945000 66816000 45945000 26284000 17684000 24715000 15033000 27256000 15724000 20894000 2364100 48939000 63064000 46418000 28732000 19327000 25302000 14791000 26214000 7 7 6 7 7 7 7 7 7 7 7 13678000 18321000 97707 46505000 6010200 5275800 7733900 13514000 19405000 10566000 22232000 12735000 17201000 1054100 44836000 5808000 8102900 8116000 13236000 19331000 10441000 21359000 5 5 3 5 5 5 5 5 5 5 5 8751100000 5466700000 3284400000 17936 583 16477 90920;90921;90922;90923;90924;90925;90926;90927;90928;90929 109931;109932;109933;109934;109935;109936;109937;109938;109939;109940;109941;109942 109935 12 SSGPYGGGGQYFAKPR Unmodified 1627.7743 0.77430417 583 P09651;P09651-2;P09651-3 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes no 0 0 0 1 By MS/MS By MS/MS 3.16 2.35 5 6 3 1 1 1 2 11 8 37.695 37.693 2;3;4 2.7805E-106 11316 20211116_3429_TMUAki_TMT10x_P_F2 370.17 324.23 27334000 43724000 164870 52189000 90693000 79113000 42039000 67581000 79881000 43339000 53144000 25450000 40831000 3045300 53046000 85731000 78676000 46358000 68568000 78660000 43325000 52094000 23 23 12 23 23 23 23 23 23 23 23 16677000 26209000 125300 30902000 82863000 71151000 33663000 42132000 49401000 26097000 31568000 15528000 24473000 2216200 31795000 78210000 69349000 37206000 43822000 48935000 26149000 31004000 13 13 7 13 13 13 13 13 13 13 13 10657000 17516000 39564 21287000 7830000 7962400 8376100 25449000 30480000 17241000 21576000 9922400 16358000 829030 21251000 7521000 9326500 9151900 24746000 29725000 17177000 21090000 10 10 5 10 10 10 10 10 10 10 10 43310000000 33050000000 10260000000 17937 583 16478 90930;90931;90932;90933;90934;90935;90936;90937;90938;90939;90940;90941;90942;90943;90944;90945;90946;90947;90948 109943;109944;109945;109946;109947;109948;109949;109950;109951;109952;109953;109954;109955;109956;109957;109958;109959;109960;109961;109962;109963;109964;109965;109966 109950 24 SSGQSAQLLSHEPGDPPCLR Unmodified 2135.0066 0.006565301 2184 Q8N1F7;Q8N1F7-2 NUP93 Nuclear pore complex protein Nup93 yes no 0 0 0 0 By MS/MS 4 0 1 1 39.618 39.816 3 1.177E-07 10701 20211116_3442_TMUAki_TMT10x_S_F4 96.455 87.634 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17938 2184 16479 90949 109967 109967 1 SSGSPYGGGYGSGGGSGGYGSR Unmodified 1909.7827 0.7826966 1168;1169 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 0 0 By MS/MS 5 0 2 2 33.081 33.027 2;3 3.5172E-225 7928 20211116_3433_TMUAki_TMT10x_P_F5 452 436.41 260430 382220 12823 635080 4220600 916020 445780 380510 788660 220560 670630 242480 357600 76118 634230 3952000 903820 660170 409120 783140 222000 650580 2 2 1 2 2 2 2 2 2 2 2 260430 382220 12823 635080 4220600 916020 445780 380510 788660 220560 670630 242480 357600 76118 634230 3952000 903820 660170 409120 783140 222000 650580 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 264010000 264010000 0 17939 1168;1169 16480 90950;90951 109968;109969 109969 2 SSGTFLSGLSDCTNVTFSK Unmodified 2006.9255 0.92552101 1920 Q5JTH9;Q5JTH9-2;Q5JTH9-3 RRP12 RRP12-like protein yes no 0 0 0 0 By MS/MS 8 0 1 1 71.646 71.709 3 2.3426E-12 23000 20211116_3436_TMUAki_TMT10x_P_F8 127.97 116.53 2285800 3937500 0 3438600 2292500 4853800 2958400 2706600 2320300 2601900 2903800 2128100 3672200 168220 3564400 2213500 4809100 2946300 2857100 2409200 2545500 2783100 1 1 0 1 1 1 1 1 1 1 1 2285800 3937500 0 3438600 2292500 4853800 2958400 2706600 2320300 2601900 2903800 2128100 3672200 168220 3564400 2213500 4809100 2946300 2857100 2409200 2545500 2783100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 950520000 950520000 0 17940 1920 16481 90952 109970 109970 1 SSGVPVDGFYTEEVR Unmodified 1640.7682 0.76821573 2649 Q9BSD7 NTPCR Cancer-related nucleoside-triphosphatase yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 53.89 53.612 2 1.8321E-38 18625 20211116_3441_TMUAki_TMT10x_S_F3 256.31 221.51 1859600 3343000 17066 3408800 2345800 3172300 2026800 3088100 2994300 2734700 2974800 1731600 3119700 176890 3469400 2242300 3244400 2102500 3133400 3003200 2685400 2870300 2 2 2 2 2 2 2 2 2 2 2 786250 1405100 94.605 1289100 1290300 2221900 1201700 1381700 1383300 1078800 1196200 732070 1310700 72333 1337200 1235000 2187100 1229200 1438100 1392600 1066100 1159700 1 1 1 1 1 1 1 1 1 1 1 1073300 1937900 16971 2119700 1055600 950310 825070 1706500 1611100 1655900 1778600 999520 1809000 104560 2132100 1007400 1057200 873290 1695300 1610500 1619400 1710600 1 1 1 1 1 1 1 1 1 1 1 246730000 120070000 126660000 17941 2649 16482 90953;90954 109971;109972 109972 2 SSHLPTEVIEKPPAVPVSFEFSDAKDENER Unmodified 3353.6416 0.64156524 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 2 By MS/MS By MS/MS 6 1.29 1 1 2 1 1 1 5 61.011 61.095 5 5.5591E-20 18404 20211116_3445_TMUAki_TMT10x_S_F6 122.89 116.38 26186000 40083000 266240 44838000 29920000 35893000 26971000 27542000 28811000 31907000 32800000 24382000 37419000 2210600 45273000 28614000 36930000 27569000 28555000 29371000 30982000 31517000 5 5 4 5 5 5 5 5 5 5 5 6083800 6723400 0 10044000 6044900 12671000 6050500 4732200 5909100 5477900 5616800 5662500 6286000 243020 10051000 5779300 12568000 6132700 5234300 6007400 5319200 5427400 1 1 0 1 1 1 1 1 1 1 1 20102000 33359000 266240 34794000 23875000 23222000 20920000 22810000 22902000 26429000 27183000 18719000 31133000 1967600 35222000 22835000 24362000 21436000 23321000 23364000 25663000 26090000 4 4 4 4 4 4 4 4 4 4 4 6211100000 1073500000 5137600000 17942 1057 16483 90955;90956;90957;90958;90959;90960 109973;109974;109975 109975 3 SSHSNAYFYGFFK Unmodified 1553.6939 0.69392858 363 O75844 ZMPSTE24 CAAX prenyl protease 1 homolog yes yes 0 0 0 0 By MS/MS 3 0 1 1 59.729 59.472 3 0.063928 19944 20211116_3430_TMUAki_TMT10x_P_F3 41.227 28.246 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17943 363 16484 90961 109976 109976 1 SSHYDELLAAEAR Unmodified 1460.6896 0.68957148 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.27 1.6 2 2 2 2 2 1 5 6 37.932 37.925 3 5.8884E-15 9899 20211116_3440_TMUAki_TMT10x_S_F2 170.95 152.12 6526400 10674000 136480 13104000 14193000 12818000 7551000 9563300 9547900 8209200 9478200 6077500 9968800 749160 13192000 13448000 13003000 8068400 9847100 9623500 8073300 9145500 10 10 8 10 10 10 10 10 10 10 10 4986600 7962700 79990 9973600 12769000 11522000 6323800 7064900 6928000 6038100 7040500 4643400 7437600 570480 10056000 12084000 11542000 6770200 7377300 7025600 5939500 6788200 5 5 3 5 5 5 5 5 5 5 5 1539800 2711000 56488 3130100 1423900 1296700 1227200 2498400 2619800 2171100 2437700 1434100 2531200 178680 3136200 1363800 1461100 1298200 2469700 2597800 2133800 2357200 5 5 5 5 5 5 5 5 5 5 5 1265500000 710830000 554620000 17944 2048 16485 90962;90963;90964;90965;90966;90967;90968;90969;90970;90971;90972 109977;109978;109979;109980;109981;109982;109983;109984;109985;109986;109987 109983 11 SSIGTGYDLSASTFSPDGR Acetyl (Protein N-term) 1958.8858 0.88576469 808 P25788;P25788-2 PSMA3 Proteasome subunit alpha type-3 yes no 1 0 0 0 By MS/MS 3 0 1 1 71.521 71.299 2 1.3504E-31 24707 20211116_3430_TMUAki_TMT10x_P_F3 168.59 155.61 1097500 1918000 65266 1685200 1084900 1904600 1273200 1197100 1311700 1150800 1331100 1022400 1788900 151640 1738900 1049000 1910800 1282800 1251400 1333400 1125900 1283500 1 1 1 1 1 1 1 1 1 1 1 1097500 1918000 65266 1685200 1084900 1904600 1273200 1197100 1311700 1150800 1331100 1022400 1788900 151640 1738900 1049000 1910800 1282800 1251400 1333400 1125900 1283500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 227690000 227690000 0 17945 808 16486 90973 109988 109988 1 SSIIVAADESTISWGPSPTFGELGYGDHKPK Unmodified 3245.5881 0.58807311 3056 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 1 By matching By MS/MS 6.5 0.5 1 1 1 1 72.759 72.834 4 4.9389E-10 25213 20211116_3446_TMUAki_TMT10x_S_F7 85.489 74.585 4265900 7744400 39079 6086700 5346100 4659000 6318400 3469500 3270300 4286500 5001900 3971800 7220200 353020 6305200 5149500 4807600 6263800 3612000 3521800 4152800 4771600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4265900 7744400 39079 6086700 5346100 4659000 6318400 3469500 3270300 4286500 5001900 3971800 7220200 353020 6305200 5149500 4807600 6263800 3612000 3521800 4152800 4771600 2 2 1 2 2 2 2 2 2 2 2 1729000000 726290000 1002700000 17946 3056 16487 90974;90975 109989;109990 109989 2 SSILLDVKPWDDETDMAK Unmodified 2061.9929 0.9928723 792 P24534 EEF1B2 Elongation factor 1-beta yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.894 2 1 2 3 2 73.203 73.147 3 2.5804E-15 23819 20211116_3431_TMUAki_TMT10x_P_F4 133.16 117.04 12410000 18445000 115370 23280000 12216000 11500000 13369000 3444700 3046800 4445600 10879000 11556000 17230000 1133700 23232000 11749000 12261000 13181000 3938900 3829200 4300500 10252000 2 2 2 2 2 2 2 2 2 2 2 12410000 18445000 115370 23280000 12216000 11500000 13369000 3444700 3046800 4445600 10879000 11556000 17230000 1133700 23232000 11749000 12261000 13181000 3938900 3829200 4300500 10252000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 626520000 626520000 0 17947 792 16488 90976;90977;90978;90979;90980 109991;109992;109993;109994;109995;109996 109991 6 SSILLDVKPWDDETDMAK Oxidation (M) 2077.9878 0.98778692 792 P24534 EEF1B2 Elongation factor 1-beta yes yes 0 0 1 1 By MS/MS By MS/MS 5.14 0.833 2 2 3 5 2 68.682 68.698 3;4 6.4444E-12 21156 20211116_3434_TMUAki_TMT10x_P_F6 127.22 111.8 40340000 63117000 664120 70634000 38788000 50731000 42850000 24947000 23149000 30067000 42862000 37565000 58923000 3941600 71230000 37334000 52330000 42642000 26818000 25112000 29154000 40738000 7 7 7 7 7 7 7 7 7 7 7 24649000 37617000 477940 42626000 25888000 38050000 27458000 16290000 14918000 18026000 26222000 22954000 35119000 2506300 43064000 24891000 38556000 27381000 17712000 16126000 17534000 24945000 5 5 5 5 5 5 5 5 5 5 5 15691000 25500000 186180 28008000 12900000 12681000 15392000 8656900 8231000 12040000 16641000 14611000 23804000 1435300 28166000 12443000 13774000 15261000 9106200 8985400 11620000 15792000 2 2 2 2 2 2 2 2 2 2 2 5152500000 3520600000 1631900000 17948 792 16488 90981;90982;90983;90984;90985;90986;90987 109997;109998;109999;110000;110001;110002;110003 110001 939 7 SSILLDVKPWDDETDMAKLEECVR Oxidation (M) 2864.3572 0.35721024 792 P24534 EEF1B2 Elongation factor 1-beta yes yes 0 0 1 2 By MS/MS By MS/MS 4.22 1.31 1 2 2 2 2 5 4 70.223 70.101 4 3.2145E-11 24265 20211116_3430_TMUAki_TMT10x_P_F3 105.79 94.987 182350000 300890000 1483400 252720000 221700000 280740000 221230000 146090000 114090000 168070000 217210000 169790000 280580000 16364000 261640000 212610000 281250000 221110000 155990000 124410000 163240000 206350000 18 18 13 18 18 18 18 18 18 18 18 97626000 155170000 794610 133480000 101790000 186270000 117500000 74329000 59699000 88152000 113540000 90901000 144710000 8267300 138500000 97999000 183980000 116570000 81635000 65173000 85525000 107860000 9 9 5 9 9 9 9 9 9 9 9 84723000 145720000 688780 119240000 119920000 94480000 103730000 71759000 54391000 79919000 103680000 78890000 135870000 8096500 123140000 114610000 97266000 104530000 74350000 59241000 77717000 98488000 9 9 8 9 9 9 9 9 9 9 9 16211000000 8916700000 7294500000 17949 792 16489 90988;90989;90990;90991;90992;90993;90994;90995;90996 110004;110005;110006;110007;110008;110009;110010;110011;110012;110013;110014;110015;110016;110017;110018;110019;110020;110021 110005 939 18 SSILLDVKPWDDETDMAKLEECVR Unmodified 2848.3623 0.36229562 792 P24534 EEF1B2 Elongation factor 1-beta yes yes 0 0 0 2 By MS/MS By MS/MS 4.43 1.18 2 2 1 2 4 3 77.003 76.963 4 1.1353E-72 25451 20211116_3431_TMUAki_TMT10x_P_F4 249.39 232.94 163260000 263220000 981280 262980000 195310000 148090000 206560000 48488000 31068000 59120000 160120000 152020000 245610000 14645000 266580000 187590000 155710000 203500000 54644000 43864000 57301000 150460000 10 10 6 10 10 10 10 10 10 10 10 80370000 126010000 900780 125780000 82478000 93650000 107540000 27193000 17501000 29977000 76311000 74839000 117580000 7529500 127850000 79768000 95892000 104990000 31085000 23831000 29163000 71793000 6 6 5 6 6 6 6 6 6 6 6 82889000 137210000 80501 137200000 112830000 54438000 99012000 21295000 13567000 29142000 83806000 77176000 128030000 7115900 138730000 107830000 59818000 98510000 23559000 20033000 28139000 78670000 4 4 1 4 4 4 4 4 4 4 4 19453000000 11503000000 7949600000 17950 792 16489 90997;90998;90999;91000;91001;91002;91003 110022;110023;110024;110025;110026;110027;110028;110029;110030;110031 110024 10 SSILPFTPPIVK Acetyl (Protein N-term) 1339.7751 0.77513901 1452 P84022 SMAD3 Mothers against decapentaplegic homolog 3 yes yes 1 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 80.956 80.957 2 0.00013003 26189 20211116_3447_TMUAki_TMT10x_S_F8 73.985 49.83 9871900 16744000 850930 15545000 10950000 15826000 12657000 10322000 10309000 10755000 12344000 9198100 15619000 1626600 15948000 10593000 15981000 12676000 10785000 10662000 10486000 11845000 3 3 3 3 3 3 3 3 3 3 3 4687900 7763400 543140 7362000 4962300 9719600 5852600 5369800 5366100 5182400 6076400 4369000 7242600 898690 7574100 4813300 9658500 5875000 5673500 5505600 5069100 5839700 1 1 1 1 1 1 1 1 1 1 1 5184000 8980300 307780 8183200 5987300 6106200 6804000 4952000 4942600 5572900 6267600 4829100 8376600 727880 8373500 5780100 6322800 6801300 5111700 5156700 5417200 6005100 2 2 2 2 2 2 2 2 2 2 2 645680000 369580000 276090000 17951 1452 16490 91004;91005 110032;110033;110034 110033 3 SSIPITVR Unmodified 871.51272 0.51271674 912 P33992 MCM5 DNA replication licensing factor MCM5 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.667 2 5 2 3 6 34.858 35.197 2 0.00041809 10777 20211116_3435_TMUAki_TMT10x_P_F7 143.61 76.575 6473800 9820700 46044 9791300 8592700 9511100 7045500 5239500 6822900 6008000 7724100 6027600 9163700 547480 9986600 8199100 9610600 7220500 5565800 6982800 5836100 7423300 12 12 6 12 12 12 12 12 12 12 12 4821700 7053900 40852 6989300 7150700 7886100 5187300 3289200 4437900 4005600 5216900 4489300 6581800 414860 7148200 6805900 7875200 5341200 3597700 4575200 3882600 5008400 3 3 2 3 3 3 3 3 3 3 3 1652100 2766800 5191.4 2801900 1442000 1625100 1858200 1950300 2385000 2002400 2507200 1538300 2581900 132620 2838300 1393200 1735400 1879400 1968100 2407600 1953500 2414900 9 9 4 9 9 9 9 9 9 9 9 252300000 176620000 75688000 17952 912 16491 91006;91007;91008;91009;91010;91011;91012;91013;91014 110035;110036;110037;110038;110039;110040;110041;110042;110043;110044;110045;110046 110036 12 SSLAEYFK Unmodified 943.4651 0.46509784 3090 Q9UBU9 NXF1 Nuclear RNA export factor 1 yes yes 0 0 0 0 By matching By MS/MS 7 0 2 1 1 57.68 58.308 2 0.020258 19246 20211116_3446_TMUAki_TMT10x_S_F7 72.038 34.48 5087100 8900300 23041 9261100 4796100 5208700 4117700 8285700 8498300 7576300 7529500 4736800 8306300 439160 9361800 4583100 5625400 4347800 8247800 8419500 7428600 7293500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5087100 8900300 23041 9261100 4796100 5208700 4117700 8285700 8498300 7576300 7529500 4736800 8306300 439160 9361800 4583100 5625400 4347800 8247800 8419500 7428600 7293500 1 1 1 1 1 1 1 1 1 1 1 549500000 284710000 264790000 17953 3090 16492 91015;91016 110047 110047 1 SSLDNIEMAYAR Oxidation (M) 1384.6293 0.62927941 2184 Q8N1F7;Q8N1F7-2 NUP93 Nuclear pore complex protein Nup93 yes no 0 0 1 0 By MS/MS By MS/MS 3.25 0.433 3 1 2 2 49.325 49.122 2 0.0068201 16801 20211116_3441_TMUAki_TMT10x_S_F3 70.363 54.16 1144800 2177600 0 2123400 1029800 801360 796390 2082400 2142600 1803400 1947400 1065800 2031700 76302 2150300 980440 926700 861690 2044200 2113900 1772800 1884700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1144800 2177600 0 2123400 1029800 801360 796390 2082400 2142600 1803400 1947400 1065800 2031700 76302 2150300 980440 926700 861690 2044200 2113900 1772800 1884700 1 1 0 1 1 1 1 1 1 1 1 395260000 309100000 86166000 17954 2184 16493 91017;91018;91019;91020 110048;110049;110050 110049 2621 3 SSLGPVGLDK Unmodified 971.52876 0.52876073 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.632 1 3 1 4 1 48.629 48.782 2 1.3032E-08 14207 20211116_3433_TMUAki_TMT10x_P_F5 129.28 87.832 28501000 41879000 1017300 50664000 50626000 42511000 32443000 25876000 29236000 25360000 36248000 26545000 39110000 3601800 50943000 48146000 43437000 33760000 27133000 30132000 24789000 34750000 4 4 3 4 4 4 4 4 4 4 4 17727000 25976000 511090 31004000 40301000 33762000 20656000 17976000 19967000 16964000 24014000 16510000 24257000 2243100 31316000 38179000 33870000 21958000 19043000 20487000 16610000 23040000 3 3 2 3 3 3 3 3 3 3 3 10774000 15903000 506210 19659000 10324000 8748700 11787000 7900600 9268800 8395900 12234000 10035000 14853000 1358700 19627000 9966800 9566500 11802000 8090400 9644800 8179500 11710000 1 1 1 1 1 1 1 1 1 1 1 1352800000 809900000 542910000 17955 712 16494 91021;91022;91023;91024;91025 110051;110052;110053;110054;110055;110056 110053 6 SSLLDDLLTESEDMAQR Oxidation (M) 1937.8888 0.88880116 87 O00429;O00429-2;O00429-4;O00429-3;O00429-5;O00429-9;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 1 0 By MS/MS By MS/MS 1 0 4 2 2 78.919 78.897 2;3 5.9285E-29 25831 20211116_3428_TMUAki_TMT10x_P_F1 189.58 177.15 10090000 16429000 83342 13606000 11063000 15774000 11753000 10361000 12043000 11343000 12565000 9393200 15319000 702430 14112000 10616000 15814000 11895000 10837000 12258000 11038000 12105000 4 4 1 4 4 4 4 4 4 4 4 5213600 7763900 83342 6688000 4038400 9380000 5211600 5329000 5949000 5645800 6328400 4854100 7240500 387680 6939100 3899900 9298600 5247800 5632100 6033300 5501000 6093100 2 2 1 2 2 2 2 2 2 2 2 4876000 8665000 0 6918200 7025000 6394200 6541800 5032200 6094300 5697700 6236700 4539100 8078900 314760 7173200 6716000 6515700 6647000 5205100 6224600 5537200 6011900 2 2 0 2 2 2 2 2 2 2 2 3442800000 2114200000 1328600000 17956 87 16495 91026;91027;91028;91029 110057;110058;110059;110060 110057 69 4 SSLLDDLLTESEDMAQR Unmodified 1921.8939 0.89388653 87 O00429;O00429-2;O00429-4;O00429-3;O00429-5;O00429-9;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 80.826 80.826 3 7.1083E-30 26598 20211116_3428_TMUAki_TMT10x_P_F1 194.77 169.45 1820700 2785100 11175 3141700 1824200 2293200 1848600 986420 963350 1296400 1985900 1695300 2600100 161410 3167200 1750500 2359100 1846500 1078200 1055100 1253300 1884100 1 1 1 1 1 1 1 1 1 1 1 1820700 2785100 11175 3141700 1824200 2293200 1848600 986420 963350 1296400 1985900 1695300 2600100 161410 3167200 1750500 2359100 1846500 1078200 1055100 1253300 1884100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 526200000 526200000 0 17957 87 16495 91030;91031 110061;110062 110061 2 SSLLLDTVTSIPSSR Unmodified 1574.8516 0.85155143 1435 P78559;P78559-2 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 68.961 68.937 2 8.614E-49 21853 20211116_3436_TMUAki_TMT10x_P_F8 250.51 224.39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17958 1435 16496 91032;91033 110063;110064 110063 2 SSLNPILFR Unmodified 1045.592 0.59202969 976 P39656;P39656-3;P39656-2 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 58.015 57.738 2 0.0015489 19244 20211116_3430_TMUAki_TMT10x_P_F3 96.668 62.871 32026000 53061000 110450 52798000 35007000 40532000 33682000 30266000 31557000 28261000 39466000 29820000 49511000 2686900 53698000 33532000 41818000 34168000 31231000 32478000 27684000 37826000 4 4 3 4 4 4 4 4 4 4 4 14849000 23103000 48141 23473000 17137000 25863000 16057000 14434000 14403000 13263000 17382000 13826000 21559000 1308000 23956000 16407000 25943000 16293000 15217000 14831000 13002000 16676000 2 2 2 2 2 2 2 2 2 2 2 17178000 29958000 62313 29325000 17870000 14670000 17625000 15833000 17154000 14998000 22084000 15994000 27952000 1378900 29742000 17125000 15875000 17876000 16014000 17647000 14682000 21151000 2 2 1 2 2 2 2 2 2 2 2 979090000 549270000 429830000 17959 976 16497 91034;91035;91036;91037 110065;110066;110067 110066 3 SSLQSQCLNEVLKAERPDVDEK Unmodified 2544.249 0.24898042 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 2 By matching By MS/MS 6 0 2 1 1 54.117 54.216 4 5.7149E-07 15565 20211116_3445_TMUAki_TMT10x_S_F6 84.156 71.96 14178000 22952000 48223 24479000 15914000 12479000 12557000 19329000 19889000 17459000 20066000 13201000 21422000 1194000 24685000 15175000 13606000 13140000 19250000 19919000 17128000 19351000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14178000 22952000 48223 24479000 15914000 12479000 12557000 19329000 19889000 17459000 20066000 13201000 21422000 1194000 24685000 15175000 13606000 13140000 19250000 19919000 17128000 19351000 2 2 1 2 2 2 2 2 2 2 2 895730000 604410000 291320000 17960 1695 16498 91038;91039 110068;110069 110068 2 SSLQYSSPAPDGCGDQTLGDLLLTPTR Unmodified 2848.3549 0.35490205 766 P22102 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes yes 0 0 0 0 By MS/MS 5 0 1 1 77.317 77.328 3 0.057151 24720 20211116_3444_TMUAki_TMT10x_S_F5 39.036 30.435 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17961 766 16499 91040 110070 110070 1 SSLSCSLQEGLIPGSQFWDASK Unmodified 2396.1318 0.13182539 1183 P52701;P52701-3;P52701-4;P52701-2 MSH6 DNA mismatch repair protein Msh6 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 78.806 78.814 3 4.6606E-05 25324 20211116_3447_TMUAki_TMT10x_S_F8 69.72 43.854 6133000 10152000 80139 8735500 7412200 7970600 7387500 4565800 4019500 5245100 6836300 5711000 9467400 601070 9000200 7111400 8090500 7390500 4834300 4336500 5094700 6507600 2 2 2 2 2 2 2 2 2 2 2 3274200 5614300 44484 4819400 3350800 5396000 3897100 2494500 2157200 2905500 3863600 3048900 5235700 313980 4981400 3229300 5396300 3870500 2695000 2331300 2820700 3674300 1 1 1 1 1 1 1 1 1 1 1 2858800 4537500 35655 3916100 4061500 2574600 3490500 2071200 1862200 2339600 2972700 2662100 4231700 287090 4018900 3882100 2694200 3520000 2139300 2005200 2273900 2833300 1 1 1 1 1 1 1 1 1 1 1 2628300000 1681500000 946760000 17962 1183 16500 91041;91042;91043 110071;110072 110072 2 SSLSSAQADFNQLAELDR Unmodified 1950.9283 0.92829821 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.17 0.687 2 6 4 8 4 69.954 69.767 2;3 9.7055E-180 25237 20211116_3441_TMUAki_TMT10x_S_F3 405.59 366.44 30693000 53821000 596220 47581000 35951000 55003000 38456000 39983000 36206000 39408000 41456000 28583000 50198000 3109500 49092000 34567000 55238000 38807000 41393000 37118000 38512000 39829000 12 12 8 12 12 12 12 12 12 12 12 19309000 32394000 446760 29702000 21213000 41416000 25217000 25884000 22496000 25175000 25863000 17982000 30217000 2005800 30666000 20465000 41121000 25285000 27080000 23125000 24616000 24845000 8 8 6 8 8 8 8 8 8 8 8 11384000 21427000 149460 17879000 14739000 13587000 13239000 14099000 13710000 14233000 15593000 10601000 19980000 1103700 18426000 14102000 14118000 13522000 14313000 13994000 13895000 14984000 4 4 2 4 4 4 4 4 4 4 4 6102900000 3652600000 2450300000 17963 1663 16501 91044;91045;91046;91047;91048;91049;91050;91051;91052;91053;91054;91055 110073;110074;110075;110076;110077;110078;110079;110080;110081;110082;110083;110084;110085;110086;110087;110088 110085 16 SSLYSEVDVHFR Unmodified 1437.6888 0.6888432 2076 Q7Z3K3;Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-6;Q7Z3K3-3 POGZ Pogo transposable element with ZNF domain yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 49.941 50.118 3 2.1015E-09 14402 20211116_3431_TMUAki_TMT10x_P_F4 153.25 65.53 6430400 9946300 127520 11250000 9556800 11264000 7338900 8199400 7815800 7645900 8381100 5988200 9285800 691150 11385000 9115200 11406000 7574900 8474700 7950500 7490200 8067500 5 5 4 5 5 5 5 5 5 5 5 3902500 5606600 78855 6477300 7004500 9147800 5096700 5012100 4799500 4595100 4835000 3634200 5234800 440480 6586300 6673000 9061500 5260400 5292200 4896900 4505000 4663000 3 3 3 3 3 3 3 3 3 3 3 2527900 4339700 48666 4772300 2552300 2116700 2242100 3187400 3016400 3050800 3546100 2354000 4051000 250670 4798300 2442100 2344200 2314500 3182600 3053600 2985200 3404400 2 2 1 2 2 2 2 2 2 2 2 1417500000 1053900000 363590000 17964 2076 16502 91056;91057;91058 110089;110090;110091;110092;110093 110089 5 SSMEKPVAQEPERIEFGGNIK Oxidation (M) 2361.1635 0.16345987 2561 Q96T23;Q96T23-2;Q96T23-3 RSF1 Remodeling and spacing factor 1 yes no 0 0 1 2 By MS/MS 6 0 1 1 44.22 44.284 4 4.3122E-10 11191 20211116_3434_TMUAki_TMT10x_P_F6 106.86 91.773 1385700 2223800 0 2535200 3283900 4663300 2260300 2854100 2979200 2515000 2415600 1290000 2076200 116800 2596200 3121400 4578800 2368500 2983000 2979400 2470200 2347700 1 1 0 1 1 1 1 1 1 1 1 1385700 2223800 0 2535200 3283900 4663300 2260300 2854100 2979200 2515000 2415600 1290000 2076200 116800 2596200 3121400 4578800 2368500 2983000 2979400 2470200 2347700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 428380000 428380000 0 17965 2561 16503 91059 110094 110094 2796 1 SSMNLLSLAAAAK Oxidation (M) 1291.6806 0.6805867 593 P0CAP2-3 yes yes 0 0 1 0 By MS/MS 4 0 1 1 32.396 32.425 3 0.030664 7338 20211116_3431_TMUAki_TMT10x_P_F4 42.789 8.196 1208300 1930300 0 1797900 1837100 2343100 1130800 1090800 1303100 930260 1374100 1125000 1800700 103450 1851700 1743400 2325300 1189300 1167500 1320600 915150 1323300 1 1 0 1 1 1 1 1 1 1 1 1208300 1930300 0 1797900 1837100 2343100 1130800 1090800 1303100 930260 1374100 1125000 1800700 103450 1851700 1743400 2325300 1189300 1167500 1320600 915150 1323300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 74417000 74417000 0 17966 593 16504 91060 110095 110095 569 1 SSMNPEYDYLFK Acetyl (Protein N-term);Oxidation (M) 1550.6599 0.65991084 1367 P62820;P62820-3;P62820-2 RAB1A Ras-related protein Rab-1A yes no 1 0 1 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 75.004 74.839 2 5.7538E-05 24448 20211116_3440_TMUAki_TMT10x_S_F2 88.417 77.587 5203900 8934400 49604 8204600 6150900 7505100 6550200 6085700 5854500 6274200 6672900 4845400 8334000 452930 8411200 5908300 7657000 6601700 6264800 6015500 6119900 6411800 3 3 2 3 3 3 3 3 3 3 3 2027000 3432700 0 3187200 2006700 3993000 2667000 2355400 2231300 2604600 2704400 1887000 3202100 129770 3280800 1938200 3981300 2657300 2484900 2305800 2533500 2594200 1 1 0 1 1 1 1 1 1 1 1 3176900 5501700 49604 5017500 4144200 3512100 3883100 3730300 3623300 3669600 3968500 2958300 5131800 323160 5130300 3970100 3675700 3944400 3779800 3709700 3586400 3817600 2 2 2 2 2 2 2 2 2 2 2 858180000 501530000 356650000 17967 1367 16505 91061;91062;91063;91064 110096;110097;110098;110099;110100 110098 1836 5 SSMSVTSLEAELQAK Oxidation (M) 1595.7713 0.7712522 2841 Q9H9B4 SFXN1 Sideroflexin-1 yes yes 0 0 1 0 By MS/MS 4 0 2 2 60.464 60.588 2;3 1.5361E-19 18719 20211116_3431_TMUAki_TMT10x_P_F4 146.5 123.62 6746100 10543000 0 9806400 8810300 14876000 7941000 9374800 9789800 9464100 8394400 6280500 9834700 487960 10132000 8419400 14718000 8157600 9811900 9829000 9239500 8141000 1 1 0 1 1 1 1 1 1 1 1 6746100 10543000 0 9806400 8810300 14876000 7941000 9374800 9789800 9464100 8394400 6280500 9834700 487960 10132000 8419400 14718000 8157600 9811900 9829000 9239500 8141000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1099700000 1099700000 0 17968 2841 16506 91065;91066 110101;110102 110102 2972 2 SSMSVTSLEAELQAK Unmodified 1579.7763 0.77633758 2841 Q9H9B4 SFXN1 Sideroflexin-1 yes yes 0 0 0 0 By MS/MS 5 0 1 1 69.191 69.213 3 0.056656 21409 20211116_3444_TMUAki_TMT10x_S_F5 40.211 25.239 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17969 2841 16506 91067 110103 110103 1 SSNECFK Acetyl (Protein N-term) 912.36473 0.36473187 1361 P62633;P62633-2;P62633-4;P62633-8;P62633-5;P62633-6;P62633-7;P62633-3 CNBP Cellular nucleic acid-binding protein yes no 1 0 0 0 By MS/MS 2 0 1 1 35.393 35.493 2 0.0031911 8360 20211116_3440_TMUAki_TMT10x_S_F2 68.422 60.75 131950 248010 0 251050 150630 123030 142220 128510 145240 108610 176470 122840 231430 7886.1 253990 144010 133360 144790 129780 148730 106890 169270 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 131950 248010 0 251050 150630 123030 142220 128510 145240 108610 176470 122840 231430 7886.1 253990 144010 133360 144790 129780 148730 106890 169270 1 1 0 1 1 1 1 1 1 1 1 3844900 0 3844900 17970 1361 16507 91068 110104 110104 1 SSNLLDLKNPFFR Unmodified 1549.8253 0.8252771 2124 Q86X55;Q86X55-1 CARM1 Histone-arginine methyltransferase CARM1 yes no 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 70.138 70.084 3 0.0017264 25474 20211116_3441_TMUAki_TMT10x_S_F3 67.334 48.589 15112000 25394000 0 16683000 17441000 38644000 22648000 27344000 26373000 26217000 22243000 14069000 23663000 1114000 17963000 16843000 37760000 22816000 28338000 26520000 25651000 21585000 2 2 0 2 2 2 2 2 2 2 2 15112000 25394000 0 16683000 17441000 38644000 22648000 27344000 26373000 26217000 22243000 14069000 23663000 1114000 17963000 16843000 37760000 22816000 28338000 26520000 25651000 21585000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 835760000 407970000 427790000 17971 2124 16508 91069;91070;91071 110105;110106;110107 110107 3 SSNPMMVLQLPER 2 Oxidation (M) 1532.7327 0.73269863 1431 P78406 RAE1 mRNA export factor yes yes 0 0 2 0 By MS/MS 5 0 1 1 46.198 46.358 2 0.094286 12053 20211116_3444_TMUAki_TMT10x_S_F5 52.193 39.837 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17972 1431 16509 91072 110108 110108 1935;1936 1 SSNSFPYNEQSGGGEATELGQEATSTISPSGAFGLFSSDLK Acetyl (Protein N-term) 4195.8982 0.89818645 70 O00203 AP3B1 AP-3 complex subunit beta-1 yes yes 1 0 0 0 By MS/MS 3 0 1 1 81.863 81.835 4 8.4288E-08 29995 20211116_3441_TMUAki_TMT10x_S_F3 65.58 56.515 325920 492790 12933 461140 372590 334360 332240 233010 244840 281390 348070 303560 459710 39728 470780 357030 346160 336410 243470 256570 272820 332570 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 325920 492790 12933 461140 372590 334360 332240 233010 244840 281390 348070 303560 459710 39728 470780 357030 346160 336410 243470 256570 272820 332570 1 1 1 1 1 1 1 1 1 1 1 91596000 0 91596000 17973 70 16510 91073 110109 110109 1 SSNVLSEDQDSYLCNVTLFR Unmodified 2346.0798 0.079789824 754 P21283 ATP6V1C1 V-type proton ATPase subunit C 1 yes yes 0 0 0 0 By matching By MS/MS 5 0 2 1 1 75.847 75.867 3 0.0038037 24161 20211116_3444_TMUAki_TMT10x_S_F5 55.208 45.012 1668000 2711600 0 2414500 2242200 1837600 1932400 1658400 1552700 1813200 2169300 1552800 2529100 110480 2475500 2139800 1903600 1964600 1699800 1618100 1764500 2073500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1668000 2711600 0 2414500 2242200 1837600 1932400 1658400 1552700 1813200 2169300 1552800 2529100 110480 2475500 2139800 1903600 1964600 1699800 1618100 1764500 2073500 1 1 0 1 1 1 1 1 1 1 1 351290000 186380000 164910000 17974 754 16511 91074;91075 110110 110110 1 SSPAAFINPPIGTVTPALK Unmodified 1880.0407 0.040749188 2725 Q9BY77;Q9BY77-2 POLDIP3 Polymerase delta-interacting protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 74.167 73.968 3 8.4451E-09 25860 20211116_3430_TMUAki_TMT10x_P_F3 115.15 93.279 8401900 14729000 49527 12735000 10289000 18303000 12409000 13332000 11731000 12353000 13068000 7823000 13736000 730120 13216000 9919000 18191000 12455000 13777000 12011000 12105000 12565000 4 4 2 4 4 4 4 4 4 4 4 6452600 11165000 18780 9731500 6909900 15516000 9517400 10004000 8619100 9139600 9958000 6007800 10413000 519840 10115000 6689700 15326000 9489700 10423000 8855300 8961800 9564600 3 3 1 3 3 3 3 3 3 3 3 1949300 3564100 30747 3003200 3378800 2787700 2891400 3328900 3111700 3213400 3110000 1815200 3323600 210280 3100100 3229300 2865300 2965200 3353800 3156000 3143200 3000100 1 1 1 1 1 1 1 1 1 1 1 1928400000 1157200000 771160000 17975 2725 16512 91076;91077;91078 110111;110112;110113;110114 110113 4 SSPAAKPGSTPSRPSSAK Unmodified 1711.8853 0.88531118 1816 Q15555;Q15555-4;Q15555-5;Q15555-3;Q15555-2 MAPRE2 Microtubule-associated protein RP/EB family member 2 yes no 0 0 0 2 By MS/MS 3 0 1 1 28.163 27.879 4 0.10189 8263 20211116_3441_TMUAki_TMT10x_S_F3 36.127 26.565 83645 154200 3176.4 123390 90337 81234 103170 60328 84727 62602 100700 77905 143770 9988.8 127420 87134 84886 103410 62461 87569 61047 96645 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 83645 154200 3176.4 123390 90337 81234 103170 60328 84727 62602 100700 77905 143770 9988.8 127420 87134 84886 103410 62461 87569 61047 96645 1 1 1 1 1 1 1 1 1 1 1 3419600 0 3419600 17976 1816 16513 91079 110115 110115 1 SSPCIHYFTGTPDPSR Unmodified 1820.8152 0.8151827 1561 Q12765;Q12765-2;Q12765-3 SCRN1 Secernin-1 yes no 0 0 0 0 By MS/MS By MS/MS 5.6 1.85 1 2 2 2 3 40.689 40.864 3 5.3153E-15 11764 20211116_3435_TMUAki_TMT10x_P_F7 141.06 125.22 4104900 6842400 44007 8922900 7038900 8421400 4329100 6598300 6621000 5627600 6309600 3822200 6392500 330280 8948400 6682600 8569100 4603800 6771600 6624400 5536200 6096300 8 8 5 8 8 8 8 8 8 8 8 2451500 3951400 29038 5227000 5742800 7250700 3245400 3824200 3819500 3379700 3516100 2282700 3691800 189510 5272600 5444700 7184700 3440300 4047800 3849800 3319100 3401200 4 4 2 4 4 4 4 4 4 4 4 1653400 2891000 14969 3695900 1296000 1170700 1083700 2774100 2801500 2247900 2793600 1539500 2700600 140770 3675800 1237900 1384400 1163600 2723800 2774500 2217100 2695100 4 4 3 4 4 4 4 4 4 4 4 1227300000 1047900000 179370000 17977 1561 16514 91080;91081;91082;91083;91084 110116;110117;110118;110119;110120;110121;110122;110123;110124 110118 9 SSPEPVALTESETEYVIR Unmodified 2005.9844 0.9844161 3339 Q9Y678 COPG1 Coatomer subunit gamma-1 yes yes 0 0 0 0 By MS/MS By MS/MS 3 1.22 1 1 2 1 3 62.216 61.93 3 7.1134E-16 18947 20211116_3428_TMUAki_TMT10x_P_F1 141.1 115.78 1891600 3616000 0 2785600 2821000 2231200 2994200 2817600 2529700 2278900 3128900 1760900 3371000 122930 2892100 2706200 2320400 3013700 2819000 2615200 2247900 2999800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1891600 3616000 0 2785600 2821000 2231200 2994200 2817600 2529700 2278900 3128900 1760900 3371000 122930 2892100 2706200 2320400 3013700 2819000 2615200 2247900 2999800 1 1 0 1 1 1 1 1 1 1 1 831020000 0 831020000 17978 3339 16515 91085;91086;91087;91088 110125;110126;110127 110125 3 SSPGLEEQEEEREEEEEEDDDDDDDPTER Unmodified 3451.2939 0.29387333 306 O75054;O75054-2 IGSF3 Immunoglobulin superfamily member 3 yes no 0 0 0 1 By MS/MS 1 0 1 1 38.372 38.372 3 1.3569E-109 9318 20211116_3428_TMUAki_TMT10x_P_F1 291.51 289.4 226090 369080 2885.4 649460 842310 877870 476120 482460 561230 324540 431090 210530 345440 28569 646160 798520 871340 504740 505760 562610 323470 419890 2 2 1 2 2 2 2 2 2 2 2 226090 369080 2885.4 649460 842310 877870 476120 482460 561230 324540 431090 210530 345440 28569 646160 798520 871340 504740 505760 562610 323470 419890 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 86394000 86394000 0 17979 306 16516 91089 110128;110129 110128 2 SSPGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR Unmodified 3483.6251 0.62508033 981 P40222 TXLNA Alpha-taxilin yes yes 0 0 0 1 By MS/MS By MS/MS 2.2 1.17 2 1 1 1 3 2 34.973 34.882 4 2.9872E-89 9400 20211116_3429_TMUAki_TMT10x_P_F2 252.74 229.37 3825600 7125400 33622 9140600 6327800 7251900 3672200 5859100 7376700 5367200 6623800 3562200 6656300 162440 9154400 6002200 7473000 3978400 6012700 7315700 5262100 6413100 12 12 5 12 12 12 12 12 12 12 12 1562300 3186100 11750 4314400 5617100 6407300 3161800 2451200 3248200 2327500 3209500 1454700 2977200 99359 4353000 5324500 6309400 3338200 2688200 3299300 2278200 3097300 7 7 3 7 7 7 7 7 7 7 7 2263300 3939400 21873 4826200 710770 844570 510360 3407900 4128500 3039700 3414400 2107500 3679200 63077 4801300 677700 1163600 640160 3324600 4016400 2983900 3315800 5 5 2 5 5 5 5 5 5 5 5 2517800000 1769800000 747970000 17980 981 16517 91090;91091;91092;91093;91094 110130;110131;110132;110133;110134;110135;110136;110137;110138;110139;110140;110141 110131 12 SSPGQTPEEGAQALAEFAALHGPALR Unmodified 2604.2932 0.29322849 1688 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes yes 0 0 0 0 By MS/MS By MS/MS 6.6 1.02 1 1 2 1 3 2 72.994 73.082 3 2.5306E-49 25342 20211116_3446_TMUAki_TMT10x_S_F7 204.65 196.66 11602000 19045000 120950 18615000 13345000 17129000 13832000 11193000 10272000 11874000 13735000 10802000 17770000 956480 18999000 12806000 17408000 13894000 11700000 10729000 11568000 13142000 8 8 3 8 8 8 8 8 8 8 8 5671300 9416200 120950 9146000 5922800 10792000 7236900 5835700 5651200 6246200 6879300 5281100 8785300 551820 9374200 5717200 10781000 7222900 6195700 5862100 6083500 6598200 4 4 3 4 4 4 4 4 4 4 4 5930800 9628900 0 9469300 7422400 6336800 6594600 5357500 4620900 5627300 6855600 5521300 8984200 404650 9624700 7089100 6626800 6671400 5504600 4866600 5484800 6544200 4 4 0 4 4 4 4 4 4 4 4 4658300000 2524300000 2133900000 17981 1688 16518 91095;91096;91097;91098;91099 110142;110143;110144;110145;110146;110147;110148;110149 110149 8 SSPQFGVTLLTYELLQR Unmodified 1951.0415 0.041477469 3141 Q9UJS0;Q9UJS0-2 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 3 1 2 80.082 80.064 2;3 4.2717E-47 27777 20211116_3429_TMUAki_TMT10x_P_F2 249.3 196.81 7513900 13518000 93248 11797000 8598500 10225000 9595900 7378100 7581600 7823300 9469100 6996300 12607000 649300 12133000 8270500 10450000 9619000 7658500 7868100 7622300 9076000 4 4 2 4 4 4 4 4 4 4 4 2245500 3832300 0 3007500 2158600 4208300 2504500 2373200 2214500 2371200 2820400 2090500 3572900 145680 3144300 2075900 4171800 2513400 2505400 2287100 2316000 2702000 1 1 0 1 1 1 1 1 1 1 1 5268400 9685800 93248 8789800 6439900 6017100 7091300 5004900 5367100 5452000 6648700 4905800 9034500 503610 8988800 6194600 6278100 7105600 5153100 5581000 5306300 6374100 3 3 2 3 3 3 3 3 3 3 3 2429700000 770070000 1659700000 17982 3141 16519 91100;91101;91102 110150;110151;110152;110153 110150 4 SSPSGPSNPSNPSVEEKLEHLEK Unmodified 2448.1769 0.17686133 2327 Q8WY22 BRI3BP BRI3-binding protein yes yes 0 0 0 1 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 50.383 50.528 4 1.0435E-27 13658 20211116_3434_TMUAki_TMT10x_P_F6 167.73 149.01 23525000 38645000 524070 44040000 47730000 57387000 31503000 38203000 36928000 33547000 34541000 21908000 36080000 2762400 44747000 45388000 57207000 32972000 39671000 37246000 32955000 33395000 8 8 7 8 8 8 8 8 8 8 8 19643000 31144000 447640 35664000 44384000 54264000 29138000 31335000 29626000 27187000 28075000 18293000 29077000 2376800 36342000 42200000 53618000 30368000 32892000 30063000 26723000 27131000 6 6 5 6 6 6 6 6 6 6 6 3882100 7500900 76438 8376100 3345700 3122600 2365400 6867600 7302100 6359700 6466100 3615200 7002400 385580 8404600 3188000 3589300 2603400 6778300 7182900 6232200 6263500 2 2 2 2 2 2 2 2 2 2 2 1447600000 966250000 481320000 17983 2327 16520 91103;91104;91105 110154;110155;110156;110157;110158;110159;110160;110161 110158 8 SSPVEFECINEK Unmodified 1437.6446 0.64459513 309 O75131 CPNE3 Copine-3 yes yes 0 0 0 0 By MS/MS 3 0 1 1 52.242 51.875 3 0.0054873 17930 20211116_3441_TMUAki_TMT10x_S_F3 61.375 38.496 1742200 2858000 5355.8 3120300 1796600 1466400 1468600 2324200 2120700 2002600 2451700 1622200 2667800 150190 3140000 1714700 1615200 1527000 2310100 2140700 1969100 2354800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1742200 2858000 5355.8 3120300 1796600 1466400 1468600 2324200 2120700 2002600 2451700 1622200 2667800 150190 3140000 1714700 1615200 1527000 2310100 2140700 1969100 2354800 1 1 1 1 1 1 1 1 1 1 1 59687000 0 59687000 17984 309 16521 91106 110162 110162 1 SSPVVNDGVVR Unmodified 1127.5935 0.59348625 1569 Q12849;Q12849-5 GRSF1 G-rich sequence factor 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 33.711 33.603 2 1.1392E-07 10417 20211116_3441_TMUAki_TMT10x_S_F3 140.78 103.05 822980 1311600 19298 1525700 1701600 1508300 1056100 1231300 1540700 936780 1307200 766370 1224600 91991 1541100 1616100 1531400 1120000 1257100 1537900 927050 1268200 2 2 1 2 2 2 2 2 2 2 2 469380 716120 19298 846040 1368000 1250900 701870 746450 892970 554350 739760 437190 668700 69486 859980 1296100 1238000 752680 778650 894640 549330 718360 1 1 1 1 1 1 1 1 1 1 1 353600 595460 0 679670 333560 257430 354260 484850 647710 382430 567400 329180 555940 22505 681110 319930 293410 367340 478410 643240 377720 549840 1 1 0 1 1 1 1 1 1 1 1 59696000 34252000 25443000 17985 1569 16522 91107;91108 110163;110164 110164 2 SSQALLSQLYQSPNR Unmodified 1690.8638 0.86384745 815 P26378;P26378-4;P26378-2;P26378-5;P26378-1;P26378-3 ELAVL4 ELAV-like protein 4 yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 4 4 4 4 57.799 57.627 2;3 5.5356E-100 18682 20211116_3429_TMUAki_TMT10x_P_F2 365.93 315.89 21557000 34967000 173740 41289000 31807000 40834000 24949000 23893000 22332000 22167000 27899000 20073000 32652000 2026600 41668000 30332000 41246000 25585000 25096000 23031000 21721000 26741000 7 7 4 7 7 7 7 7 7 7 7 18031000 29414000 112670 34221000 28681000 37738000 22153000 19928000 18857000 18329000 22478000 16789000 27464000 1682900 34624000 27339000 37828000 22710000 21113000 19457000 17967000 21571000 6 6 3 6 6 6 6 6 6 6 6 3526300 5553600 61067 7067500 3126100 3095800 2796100 3964400 3474600 3838100 5421300 3283800 5187700 343660 7043600 2992800 3418300 2874400 3983100 3574100 3753700 5169500 1 1 1 1 1 1 1 1 1 1 1 4623300000 3164900000 1458400000 17986 815 16523 91109;91110;91111;91112;91113;91114;91115;91116 110165;110166;110167;110168;110169;110170;110171;110172;110173 110168 9 SSQALLSQLYQSPNRR Unmodified 1846.965 0.96495848 815 P26378;P26378-4;P26378-2;P26378-5;P26378-1;P26378-3 ELAVL4 ELAV-like protein 4 yes no 0 0 0 1 By MS/MS By MS/MS 3.71 1.03 1 2 2 2 3 4 48.375 48.398 3 3.9897E-43 13654 20211116_3431_TMUAki_TMT10x_P_F4 233.49 189.7 30836000 49567000 234040 62181000 51303000 49542000 34212000 47047000 48668000 41809000 47581000 28713000 46298000 2952800 62355000 48769000 51194000 36044000 47803000 48841000 41049000 45934000 11 11 8 11 11 11 11 11 11 11 11 15641000 23706000 102040 30114000 36245000 37022000 22779000 21329000 21742000 19017000 22294000 14564000 22144000 1638400 30372000 34418000 36937000 23777000 22409000 22184000 18668000 21489000 5 5 4 5 5 5 5 5 5 5 5 15195000 25860000 132010 32066000 15058000 12521000 11433000 25718000 26926000 22793000 25287000 14149000 24154000 1314400 31982000 14351000 14257000 12266000 25395000 26656000 22381000 24444000 6 6 4 6 6 6 6 6 6 6 6 5706000000 3435400000 2270600000 17987 815 16524 91117;91118;91119;91120;91121;91122;91123 110174;110175;110176;110177;110178;110179;110180;110181;110182;110183;110184 110176 11 SSQESIVCELR Unmodified 1306.6187 0.61871473 3010 Q9NXV6 CDKN2AIP CDKN2A-interacting protein yes yes 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 42.603 42.649 2 1.9147E-08 12997 20211116_3430_TMUAki_TMT10x_P_F3 155.33 105.62 286740 421590 2539 623300 831620 722860 387270 370930 387160 348420 445340 267000 394140 33770 623110 786380 722350 416050 394220 395940 341210 427800 1 1 1 1 1 1 1 1 1 1 1 286740 421590 2539 623300 831620 722860 387270 370930 387160 348420 445340 267000 394140 33770 623110 786380 722350 416050 394220 395940 341210 427800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36045000 36045000 0 17988 3010 16525 91124;91125 110185;110186 110186 2 SSRLEEDDGDVAMSDAQDGPR Oxidation (M) 2264.9451 0.94514684 3090 Q9UBU9;Q9UBU9-2 NXF1 Nuclear RNA export factor 1 yes no 0 0 1 1 By MS/MS By MS/MS 1 0 2 1 1 31.835 31.85 3 3.7817E-26 8651 20211116_3439_TMUAki_TMT10x_S_F1 164.56 161.12 457580 698180 8565.8 1321300 1686400 1057600 741760 1194500 2044900 529090 1153000 426110 653810 53253 1300000 1593800 1096700 842130 1187700 1991600 544150 1139900 3 3 1 3 3 3 3 3 3 3 3 194070 257180 8565.8 518590 1495400 908040 574450 496530 862450 184690 433060 180760 240960 42298 516410 1411200 891780 639760 516270 849560 193230 431050 1 1 1 1 1 1 1 1 1 1 1 263510 441000 0 802710 191040 149530 167300 697970 1182400 344400 719960 245350 412850 10955 783590 182570 204950 202370 671390 1142100 350920 708840 2 2 0 2 2 2 2 2 2 2 2 246140000 155560000 90581000 17989 3090 16526 91126;91127 110187;110188;110189 110188 3132 3 SSRLEEDDGDVAMSDAQDGPR Unmodified 2248.9502 0.95023221 3090 Q9UBU9;Q9UBU9-2 NXF1 Nuclear RNA export factor 1 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 35.861 35.843 3 5.7497E-83 8299 20211116_3428_TMUAki_TMT10x_P_F1 287.19 236.05 396470 588740 0 989780 990270 640900 498810 359490 344080 315060 584410 369060 550860 29079 976200 936370 668110 526880 378380 365350 309540 556320 2 2 0 2 2 2 2 2 2 2 2 214750 286370 0 519470 891180 572250 419720 168980 164930 149940 297390 199910 268090 21387 514270 842270 570650 442510 191590 183640 147230 282780 1 1 0 1 1 1 1 1 1 1 1 181720 302370 0 470310 99089 68655 79091 190510 179160 165120 287020 169150 282770 7691.8 461930 94104 97455 84368 186790 181710 162310 273540 1 1 0 1 1 1 1 1 1 1 1 193350000 121730000 71618000 17990 3090 16526 91128;91129 110190;110191 110190 2 SSSGLLEWESK Unmodified 1221.5877 0.58773217 677 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 0 By MS/MS By MS/MS 4.43 0.495 4 3 3 4 57.352 57.431 2;3 1.6553E-14 17926 20211116_3442_TMUAki_TMT10x_S_F4 190.86 144.4 33479000 52475000 93744 71259000 51680000 40189000 39037000 22056000 22566000 24931000 42940000 31169000 49035000 2683100 70905000 49213000 42451000 39748000 23426000 24401000 24230000 40792000 8 8 2 8 8 8 8 8 8 8 8 15362000 22141000 44595 31342000 38151000 28397000 25188000 9080700 9693100 10712000 18144000 14302000 20694000 1445100 31281000 36245000 28677000 25747000 10256000 10839000 10395000 17241000 3 3 1 3 3 3 3 3 3 3 3 18117000 30335000 49149 39916000 13529000 11792000 13850000 12976000 12873000 14219000 24796000 16867000 28341000 1238100 39624000 12967000 13774000 14001000 13170000 13562000 13836000 23551000 5 5 1 5 5 5 5 5 5 5 5 2676600000 1023500000 1653100000 17991 677 16527 91130;91131;91132;91133;91134;91135;91136 110192;110193;110194;110195;110196;110197;110198;110199;110200 110196 9 SSSPAPADIAQTVQEDLR Unmodified 1883.9225 0.92248455 1616 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.79 0.939 1 5 4 4 5 9 65.227 64.952 2;3 4.0458E-79 23252 20211116_3441_TMUAki_TMT10x_S_F3 297.45 271.98 49657000 83543000 1059200 82022000 61913000 96280000 61019000 65705000 62542000 61492000 66992000 46243000 77949000 5273900 83996000 59407000 96517000 61988000 68222000 63717000 60230000 64487000 15 15 14 15 15 15 15 15 15 15 15 37037000 62790000 833590 62246000 49982000 83964000 49375000 49090000 45995000 46496000 50417000 34491000 58588000 4027100 63864000 47960000 83413000 50010000 51593000 47097000 45517000 48498000 11 11 10 11 11 11 11 11 11 11 11 12620000 20753000 225610 19776000 11932000 12316000 11644000 16616000 16547000 14996000 16575000 11752000 19361000 1246900 20132000 11447000 13104000 11978000 16628000 16620000 14713000 15989000 4 4 4 4 4 4 4 4 4 4 4 4959000000 2910500000 2048500000 17992 1616 16528 91137;91138;91139;91140;91141;91142;91143;91144;91145;91146;91147;91148;91149;91150 110201;110202;110203;110204;110205;110206;110207;110208;110209;110210;110211;110212;110213;110214;110215;110216;110217;110218;110219;110220 110216 20 SSSPTIALPMLLQALALSK Oxidation (M) 1956.0965 0.096549507 3146 Q9UJX4;Q9UJX4-3 ANAPC5 Anaphase-promoting complex subunit 5 yes no 0 0 1 0 By MS/MS By matching 6 0 2 1 1 81.682 81.681 3 0.0055947 26408 20211116_3434_TMUAki_TMT10x_P_F6 53.037 36.73 1170100 1904300 13232 2008100 1326600 2215100 1421000 1094800 1009600 1236900 1376200 1089600 1777300 111530 2044300 1275200 2218600 1423700 1173900 1058100 1202200 1316300 1 1 1 1 1 1 1 1 1 1 1 1170100 1904300 13232 2008100 1326600 2215100 1421000 1094800 1009600 1236900 1376200 1089600 1777300 111530 2044300 1275200 2218600 1423700 1173900 1058100 1202200 1316300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 221240000 100180000 121060000 17993 3146 16529 91151;91152 110221 110221 3159 1 SSSPTIALPMLLQALALSK Unmodified 1940.1016 0.10163489 3146 Q9UJX4;Q9UJX4-3 ANAPC5 Anaphase-promoting complex subunit 5 yes no 0 0 0 0 By matching By MS/MS 6 0 2 1 1 82.669 82.671 3 2.3426E-12 27212 20211116_3445_TMUAki_TMT10x_S_F6 127.97 101.53 478290 845910 0 860090 538290 462340 619490 355330 304310 346170 542500 445210 789380 24790 870480 517160 493130 614370 366400 331820 338460 515950 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 478290 845910 0 860090 538290 462340 619490 355330 304310 346170 542500 445210 789380 24790 870480 517160 493130 614370 366400 331820 338460 515950 1 1 0 1 1 1 1 1 1 1 1 58406000 12011000 46394000 17994 3146 16529 91153;91154 110222 110222 1 SSSSSAASDTATSTQRPLR Unmodified 1908.9137 0.91371077 2562 Q96T37;Q96T37-4;Q96T37-2;Q96T37-3 RBM15 Putative RNA-binding protein 15 yes no 0 0 0 1 By MS/MS 5 0 1 1 26.694 26.62 3 1.7228E-06 5331 20211116_3433_TMUAki_TMT10x_P_F5 97.291 72.356 22975 32309 0 28171 46809 39781 22846 13221 22546 16944 22522 21392 30132 0 29205 44281 39214 24417 14894 22949 16395 21727 1 1 0 1 1 1 1 1 1 1 1 22975 32309 0 28171 46809 39781 22846 13221 22546 16944 22522 21392 30132 0 29205 44281 39214 24417 14894 22949 16395 21727 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5275500 5275500 0 17995 2562 16530 91155 110223 110223 1 SSSSSSASAAAAAAAASSSASCSRR Unmodified 2244.9989 0.99891374 1536 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 32.423 32.312 3 1.0072E-87 6896 20211116_3428_TMUAki_TMT10x_P_F1 274.3 257.42 78243 99908 0 220460 606040 302090 142660 194650 230980 88714 164660 72843 93676 12712 217610 569370 300300 171670 200150 228770 91007 160890 1 1 0 1 1 1 1 1 1 1 1 78243 99908 0 220460 606040 302090 142660 194650 230980 88714 164660 72843 93676 12712 217610 569370 300300 171670 200150 228770 91007 160890 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 73697000 73697000 0 17996 1536 16531 91156;91157 110224 110224 1 SSTAAQEVK Unmodified 919.46108 0.4610751 3056 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 0 By MS/MS 3 0 1 1 29.72 29.457 2 0.00041314 8888 20211116_3441_TMUAki_TMT10x_S_F3 123.86 87.665 58622 104930 0 85391 67788 75997 63551 61599 61633 49013 80556 54558 97840 1894.6 88352 64690 77677 64624 62979 63457 48387 77124 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 58622 104930 0 85391 67788 75997 63551 61599 61633 49013 80556 54558 97840 1894.6 88352 64690 77677 64624 62979 63457 48387 77124 1 1 0 1 1 1 1 1 1 1 1 3381300 0 3381300 17997 3056 16532 91158 110225 110225 1 SSTAISSIAADGEFLHELEEK Unmodified 2233.075 0.075022022 354 O75694;O75694-2 NUP155 Nuclear pore complex protein Nup155 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 77.016 76.984 3 8.0412E-21 26988 20211116_3439_TMUAki_TMT10x_S_F1 160.02 144.59 17021000 29456000 103280 25240000 16962000 28559000 19300000 15628000 17185000 18738000 19394000 15848000 27470000 1370500 26097000 16321000 28599000 19389000 16636000 17654000 18172000 18641000 3 3 1 3 3 3 3 3 3 3 3 11660000 20399000 0 16996000 11054000 22286000 13127000 10694000 11920000 12962000 13142000 10855000 19022000 822090 17658000 10642000 22117000 13170000 11526000 12223000 12566000 12640000 2 2 0 2 2 2 2 2 2 2 2 5361400 9057700 103280 8244200 5909000 6272900 6173300 4934300 5264400 5776400 6252400 4992700 8448800 548410 8438400 5678700 6481900 6219900 5109600 5430500 5606800 6000800 1 1 1 1 1 1 1 1 1 1 1 1628800000 1100300000 528450000 17998 354 16533 91159;91160 110226;110227;110228 110228 3 SSTGPEPPAPTPLLAER Unmodified 1718.8839 0.88391419 3216 Q9UQ35;Q9UQ35-2;Q9UQ35-3 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 49.294 49.449 2;3 4.6989E-22 14173 20211116_3431_TMUAki_TMT10x_P_F4 160.48 129.65 3095000 5042800 64752 6066700 2588900 2324100 2342900 3888900 3506400 3338300 4357000 2882200 4709300 309860 6060700 2480100 2633600 2425400 3858500 3546400 3283000 4176700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3095000 5042800 64752 6066700 2588900 2324100 2342900 3888900 3506400 3338300 4357000 2882200 4709300 309860 6060700 2480100 2633600 2425400 3858500 3546400 3283000 4176700 2 2 2 2 2 2 2 2 2 2 2 143670000 0 143670000 17999 3216 16534 91161;91162 110229;110230;110231 110229 3 SSTLGPSALK Unmodified 959.52876 0.52876073 297 O60870;O60870-2 KIN DNA/RNA-binding protein KIN17 yes no 0 0 0 0 By MS/MS 7 0 1 1 39.979 40.611 2 0.0055863 11991 20211116_3446_TMUAki_TMT10x_S_F7 68.847 33.955 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18000 297 16535 91163 110232 110232 1 SSTPEEVK Unmodified 875.42363 0.42362696 787 P23528 CFL1 Cofilin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 30.767 30.527 2 0.00043051 9269 20211116_3441_TMUAki_TMT10x_S_F3 147.04 77.693 1363300 2106900 3580.6 1649700 1305800 1500200 1453800 597390 781310 826340 1359200 1269300 1964300 111900 1713000 1255700 1517200 1446100 659800 844780 797610 1293300 3 3 1 3 3 3 3 3 3 3 3 432020 648780 3580.6 504610 439220 550530 361750 211670 250520 280170 442720 402280 604840 39255 525650 419410 550390 367550 234370 266540 270810 421130 1 1 1 1 1 1 1 1 1 1 1 931240 1458100 0 1145100 866560 949670 1092000 385710 530790 546160 916500 867050 1359400 72640 1187400 836330 966840 1078500 425430 578240 526800 872180 2 2 0 2 2 2 2 2 2 2 2 44535000 16101000 28435000 18001 787 16536 91164;91165 110233;110234;110235 110234 3 SSTPEEVKK Unmodified 1003.5186 0.51858998 787 P23528 CFL1 Cofilin-1 yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 30.413 30.397 3 0.0010135 6525 20211116_3431_TMUAki_TMT10x_P_F4 93.556 62.482 2303900 3397600 12441 2843100 2143400 2748000 1838900 950270 1313900 1142100 2057500 2145200 3168200 200360 2938100 2048300 2764900 1865000 1062600 1386000 1107500 1961800 2 2 2 2 2 2 2 2 2 2 2 2303900 3397600 12441 2843100 2143400 2748000 1838900 950270 1313900 1142100 2057500 2145200 3168200 200360 2938100 2048300 2764900 1865000 1062600 1386000 1107500 1961800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 74371000 74371000 0 18002 787 16537 91166;91167 110236;110237 110236 2 SSTPLPTISSSAENTR Unmodified 1646.8111 0.81114318 1006;1007 P42166;P42167;P42167-2;P42167-3 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 0 0 By MS/MS By MS/MS 4.62 0.992 1 3 2 2 6 2 40.149 40.236 2;3 3.5496E-120 11036 20211116_3433_TMUAki_TMT10x_P_F5 355.26 308.44 11783000 16477000 21649 25912000 39272000 29886000 16258000 19194000 24840000 14044000 19155000 10969000 15410000 1094900 25828000 37060000 29960000 17960000 19901000 24693000 13928000 18654000 13 13 4 13 13 13 13 13 13 13 13 9012200 12022000 0 19598000 36866000 28029000 14129000 14619000 18957000 10590000 14242000 8389100 11246000 864830 19584000 34760000 27733000 15670000 15420000 18907000 10509000 13885000 8 8 0 8 8 8 8 8 8 8 8 2771200 4454700 21649 6314600 2406300 1856200 2128400 4575600 5883000 3454300 4913000 2580300 4163700 230110 6243900 2300700 2227100 2289700 4481400 5786200 3419900 4769400 5 5 4 5 5 5 5 5 5 5 5 2622300000 2241500000 380880000 18003 1006;1007 16538 91168;91169;91170;91171;91172;91173;91174;91175 110238;110239;110240;110241;110242;110243;110244;110245;110246;110247;110248;110249;110250;110251 110246 14 SSTPLSEAK Unmodified 918.46583 0.46582612 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS 5 0 1 1 33.263 33.441 2 3.1939E-05 6892 20211116_3444_TMUAki_TMT10x_S_F5 114.89 78.194 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18004 1057 16539 91176 110252 110252 1 SSTPTTIFPIR Unmodified 1218.6608 0.66083754 2119 Q86W42;Q86W42-3;Q86W42-2 THOC6 THO complex subunit 6 homolog yes no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 53.443 53.286 2 7.1801E-06 15377 20211116_3428_TMUAki_TMT10x_P_F1 119.21 94.39 6285800 12091000 23015 12933000 9936100 11509000 7692100 9003000 9706100 8484100 9485100 5852500 11285000 545720 13113000 9469000 11756000 7982100 9264600 9778300 8307400 9156700 2 2 1 2 2 2 2 2 2 2 2 3267600 6325800 0 6839300 6704300 8419800 4775400 4322200 4990400 4213900 4841300 3042000 5904600 271050 6964600 6376700 8387900 4951400 4598000 5062200 4120000 4674800 1 1 0 1 1 1 1 1 1 1 1 3018200 5765100 23015 6093200 3231800 3089500 2916700 4680900 4715700 4270200 4643800 2810400 5380700 274670 6148000 3092300 3368400 3030700 4666600 4716100 4187400 4481900 1 1 1 1 1 1 1 1 1 1 1 456040000 199300000 256740000 18005 2119 16540 91177;91178;91179 110253;110254 110253 2 SSVAVLTQESFAEHR Acetyl (Protein N-term) 1701.8322 0.83221298 1467 Q00341 HDLBP Vigilin yes yes 1 0 0 0 By MS/MS By MS/MS 2.4 0.49 3 2 3 2 56.431 56.108 2 5.534E-42 16881 20211116_3440_TMUAki_TMT10x_S_F2 195.51 187.87 1062500 1543000 116540 1932500 740050 1199300 1303600 1306000 1581100 1440100 1543600 990120 1441300 192180 1933000 730820 1269400 1301400 1326500 1595000 1400900 1490200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1062500 1543000 116540 1932500 740050 1199300 1303600 1306000 1581100 1440100 1543600 990120 1441300 192180 1933000 730820 1269400 1301400 1326500 1595000 1400900 1490200 1 1 1 1 1 1 1 1 1 1 1 910710000 546080000 364630000 18006 1467 16541 91180;91181;91182;91183;91184 110255;110256;110257;110258 110257 4 SSVAVPYVIVPLK Unmodified 1370.8173 0.81733818 52 CON__Q2UVX4 yes yes 0 0 0 0 By MS/MS 3 0 1 1 74.658 74.41 3 0.043799 27020 20211116_3441_TMUAki_TMT10x_S_F3 45.28 24.327 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18007 52 16542 91185 110259 110259 1 SSVGPSKPVSQPR Unmodified 1324.7099 0.709913 3337 Q9Y657 SPIN1 Spindlin-1 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 29.449 29.489 3 2.9813E-06 7727 20211116_3439_TMUAki_TMT10x_S_F1 111.43 90.97 457490 787040 1140.4 659620 713980 754680 547840 445200 519170 438750 574280 425950 733910 38950 683340 680250 756000 563500 468070 531380 428770 552280 3 3 2 3 3 3 3 3 3 3 3 290120 493610 1140.4 415710 511890 581250 340790 282210 322890 278500 378860 270140 460300 28222 432070 486590 575210 354070 301910 331260 272150 363740 2 2 2 2 2 2 2 2 2 2 2 167370 293430 0 243910 202090 173430 207060 162990 196280 160250 195420 155810 273610 10729 251270 193660 180790 209430 166160 200120 156630 188540 1 1 0 1 1 1 1 1 1 1 1 12963000 4948500 8014600 18008 3337 16543 91186;91187 110260;110261;110262 110262 3 SSVIGASSQFTR Unmodified 1238.6255 0.62551466 1625 Q13371;Q13371-2 PDCL Phosducin-like protein yes no 0 0 0 0 By MS/MS 8 0 1 1 39.875 40.109 2 6.8388E-12 9518 20211116_3447_TMUAki_TMT10x_S_F8 137.62 108.88 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18009 1625 16544 91188 110263 110263 1 SSVINTLR Unmodified 888.50288 0.50288033 1664 Q13823 GNL2 Nucleolar GTP-binding protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.816 1 1 1 2 1 35.99 36.315 2 0.10192 9848 20211116_3435_TMUAki_TMT10x_P_F7 47.869 7.0906 851970 1358400 0 1274100 809520 669850 549280 518370 553820 496340 811830 793080 1267200 45791 1296700 768090 716260 570910 534030 572370 485660 775160 2 2 0 2 2 2 2 2 2 2 2 395950 589660 0 581960 423160 424130 251470 248000 256790 231950 388390 368590 550190 22592 591880 400740 437860 264220 260560 265680 227200 370590 1 1 0 1 1 1 1 1 1 1 1 456020 768710 0 692130 386360 245710 297810 270370 297030 264390 423440 424490 717000 23200 704820 367350 278400 306690 273470 306690 258470 404560 1 1 0 1 1 1 1 1 1 1 1 24987000 14533000 10454000 18010 1664 16545 91189;91190;91191 110264 110264 1 SSVLENFVGR Unmodified 1106.572 0.57202253 1140;1518 P50570;P50570-3;P50570-2;P50570-5;P50570-4;Q9UQ16-5;Q05193;Q05193-5;Q05193-3;Q05193-2 DNM2;DNM1 Dynamin-2;Dynamin-1 no no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 55.92 56.363 2 4.1194E-05 18433 20211116_3446_TMUAki_TMT10x_S_F7 134.23 104.42 16896000 29330000 395750 28205000 21339000 22583000 17740000 23242000 21021000 21707000 25290000 15734000 27364000 1727100 28770000 20388000 23367000 18284000 23551000 21393000 21264000 24264000 3 3 2 3 3 3 3 3 3 3 3 5319600 8908400 188540 8864700 8639900 11362000 6539100 6541000 6323900 6106400 7351900 4954500 8312300 663250 9083900 8242900 11312000 6736000 6880700 6479400 5981800 7060300 1 1 1 1 1 1 1 1 1 1 1 11576000 20422000 207210 19341000 12699000 11221000 11201000 16701000 14697000 15601000 17938000 10779000 19051000 1063800 19686000 12145000 12055000 11548000 16671000 14914000 15282000 17204000 2 2 1 2 2 2 2 2 2 2 2 1497900000 797700000 700180000 18011 1140;1518 16546 91192;91193;91194 110265;110266;110267 110267 3 SSVLENFVGRDFLPR Unmodified 1734.9053 0.90531834 1140;1518 P50570;P50570-3;P50570-2;P50570-5;P50570-4;Q9UQ16-5;Q05193;Q05193-5;Q05193-3;Q05193-2 DNM2;DNM1 Dynamin-2;Dynamin-1 no no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 72.275 72.106 3 8.783E-24 23255 20211116_3440_TMUAki_TMT10x_S_F2 185.02 148.68 15440000 25302000 54114 23051000 20001000 24689000 18447000 19192000 17250000 17075000 19864000 14376000 23601000 1355900 23699000 19139000 24927000 18756000 19727000 17694000 16763000 19081000 5 5 2 5 5 5 5 5 5 5 5 9679700 15209000 18358 13836000 10096000 18441000 11808000 12380000 10915000 10535000 12295000 9012600 14186000 797130 14281000 9723100 18366000 11860000 12838000 11192000 10365000 11818000 3 3 1 3 3 3 3 3 3 3 3 5760500 10094000 35756 9214900 9904400 6248100 6639300 6811900 6334800 6539800 7568900 5363700 9415000 558800 9418400 9416200 6560800 6895800 6889200 6501700 6398400 7263200 2 2 1 2 2 2 2 2 2 2 2 1525600000 905030000 620580000 18012 1140;1518 16547 91195;91196;91197;91198 110268;110269;110270;110271;110272;110273;110274 110274 7 SSVLESLVGR Unmodified 1045.5768 0.57677356 87 O00429;O00429-2;O00429-4;O00429-3;O00429-5;O00429-9;O00429-8;O00429-6 DNM1L Dynamin-1-like protein yes no 0 0 0 0 By MS/MS By MS/MS 6.5 1.12 2 2 2 2 4 4 59.479 59.717 2 2.0403E-09 19239 20211116_3435_TMUAki_TMT10x_P_F7 181.53 149.21 34324000 57151000 69885 57743000 42439000 51558000 37507000 48409000 47584000 45008000 48419000 31958000 53330000 2779300 58773000 40557000 52835000 38615000 49277000 47997000 44097000 46682000 5 5 1 5 5 5 5 5 5 5 5 14503000 23673000 0 23489000 22347000 32038000 18442000 19821000 20581000 18112000 19959000 13503000 22089000 1169700 24103000 21320000 31836000 18977000 20718000 20822000 17760000 19273000 2 2 0 2 2 2 2 2 2 2 2 19821000 33478000 69885 34254000 20092000 19521000 19066000 28588000 27003000 26895000 28459000 18455000 31242000 1609500 34669000 19237000 20999000 19638000 28558000 27175000 26337000 27409000 3 3 1 3 3 3 3 3 3 3 3 4607000000 2327900000 2279100000 18013 87 16548 91199;91200;91201;91202;91203;91204;91205;91206 110275;110276;110277;110278;110279;110280;110281 110277 7 SSVLIAQQTDTSDPEK Unmodified 1717.837 0.83702358 1040 P46060 RANGAP1 Ran GTPase-activating protein 1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 45.346 45.363 3 0.0001736 14094 20211116_3430_TMUAki_TMT10x_P_F3 75.463 61.783 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18014 1040 16549 91207 110282 110282 1 SSVMRENENGEEEEEEAEFGEEDLFHQQGDPR Oxidation (M) 3767.5401 0.54014923 1505 Q03252 LMNB2 Lamin-B2 yes yes 0 0 1 1 By MS/MS By MS/MS 1 0 2 1 1 50.637 50.501 4 1.4887E-20 16253 20211116_3439_TMUAki_TMT10x_S_F1 128.22 122.32 2175600 4295100 12093 3484500 2546700 3868900 2240500 4065000 3806800 3647600 3372800 2025600 4004800 131030 3617800 2433400 3922100 2337100 4110600 3788900 3579600 3267100 3 3 1 3 3 3 3 3 3 3 3 1023100 1816400 12093 1189500 958710 2578200 1280200 1722200 1495900 1574400 1307700 952740 1692600 95194 1278500 928070 2521600 1288500 1789800 1505700 1543800 1267300 1 1 1 1 1 1 1 1 1 1 1 1152500 2478700 0 2295100 1588000 1290700 960250 2342800 2310900 2073200 2065200 1072900 2312200 35833 2339300 1505300 1400500 1048700 2320800 2283100 2035900 1999800 2 2 0 2 2 2 2 2 2 2 2 3210200000 2024900000 1185300000 18015 1505 16550 91208;91209 110283;110284;110285 110284 2044 3 SSVNCPFSSQDMK Oxidation (M) 1501.6177 0.61772845 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 1 0 By MS/MS By MS/MS 5 0.707 1 2 1 3 1 38.308 38.354 3 0.0018327 8540 20211116_3434_TMUAki_TMT10x_P_F6 65.219 52.858 3566300 6385900 17162 6667900 11081000 9330800 6184300 7511600 9706400 5170400 7177900 3320600 5959800 405440 6822200 10503000 9300400 6638100 7659000 9630700 5146100 7002500 5 5 3 5 5 5 5 5 5 5 5 3247200 5851100 17050 5969700 10806000 9099400 5949300 7048500 9180000 4794800 6660700 3023500 5460100 379500 6128500 10240000 9030700 6388600 7202500 9108300 4775700 6503300 4 4 2 4 4 4 4 4 4 4 4 319120 534790 111.91 698150 274980 231360 235030 463090 526350 375640 517240 297130 499630 25943 693710 262670 269690 249500 456530 522400 370470 499240 1 1 1 1 1 1 1 1 1 1 1 224580000 178200000 46374000 18016 1546 16551 91210;91211;91212;91213 110286;110287;110288;110289;110290 110289 2084 5 SSVNCPFSSQDMKYPSPFFVFGEK Oxidation (M) 2800.2513 0.2512886 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 1 1 By MS/MS By MS/MS 2 0 2 1 1 76.843 76.785 4 0.0073444 25153 20211116_3440_TMUAki_TMT10x_S_F2 46.399 33.361 8939800 13595000 190240 11898000 12003000 15532000 9891100 15346000 12836000 12083000 12446000 8325000 12679000 927560 12312000 11465000 15595000 10235000 15515000 12916000 11935000 12018000 2 2 1 2 2 2 2 2 2 2 2 4948300 7330100 190240 6731500 4383100 10766000 5955000 8172700 6677100 6612200 6782500 4608800 6837600 579630 6969900 4253800 10660000 5980600 8393600 6765000 6522100 6539500 1 1 1 1 1 1 1 1 1 1 1 3991500 6264600 0 5166700 7619800 4766100 3936100 7173300 6159000 5471000 5663400 3716200 5841400 347940 5342400 7211400 4934200 4254000 7120900 6150900 5413400 5478700 1 1 0 1 1 1 1 1 1 1 1 3007300000 1451300000 1556000000 18017 1546 16552 91214;91215 110291;110292 110292 2084 2 SSVVGGFVSHYLLEK Unmodified 1620.8512 0.8511575 3180 Q9UM54-6;Q9UM54;Q9UM54-5;Q9UM54-4;Q9UM54-2;Q9UM54-1 MYO6 Unconventional myosin-VI yes no 0 0 0 0 By matching By MS/MS 2 0 2 1 1 72.259 72.09 3 1.0331E-09 23303 20211116_3440_TMUAki_TMT10x_S_F2 127.88 97.051 2468900 4154900 87880 4421500 3398200 3174200 3314000 3114600 3053200 3217600 3975700 2299500 3878000 299610 4473200 3261600 3309300 3357900 3172800 3150200 3138200 3806700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2468900 4154900 87880 4421500 3398200 3174200 3314000 3114600 3053200 3217600 3975700 2299500 3878000 299610 4473200 3261600 3309300 3357900 3172800 3150200 3138200 3806700 1 1 1 1 1 1 1 1 1 1 1 389270000 179570000 209710000 18018 3180 16553 91216;91217 110293 110293 1 SSVVTAVK Unmodified 789.45962 0.45961853 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 By MS/MS 6.33 0.471 2 1 3 32.656 33.037 2 0.0054195 6994 20211116_3434_TMUAki_TMT10x_P_F6 88.294 55.173 385640 661990 0 563520 546060 681040 440930 367440 354900 317960 498720 359020 617340 28751 583590 520590 679500 450080 387930 369920 312580 476640 3 3 0 3 3 3 3 3 3 3 3 385640 661990 0 563520 546060 681040 440930 367440 354900 317960 498720 359020 617340 28751 583590 520590 679500 450080 387930 369920 312580 476640 3 3 0 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2220600 2220600 0 18019 2116 16554 91218;91219;91220 110294;110295;110296;110297;110298 110295 5 SSYDVFQLEFNDGAYNIK Unmodified 2108.9691 0.96910039 1859 Q16658 FSCN1 Fascin yes yes 0 0 0 0 By MS/MS By MS/MS 4.64 1.23 1 1 2 4 3 5 6 78.313 78.303 2;3 6.3748E-24 25147 20211116_3444_TMUAki_TMT10x_S_F5 177.16 154.96 39711000 68588000 474060 63049000 45010000 59516000 48599000 35222000 33578000 39725000 47704000 36976000 63979000 3608900 64658000 43264000 60303000 48643000 37172000 35318000 38612000 45581000 10 10 4 10 10 10 10 10 10 10 10 24071000 41834000 380990 38516000 23092000 41177000 28080000 20902000 20616000 24604000 28779000 22415000 39023000 2291000 39567000 22287000 41329000 27991000 22386000 21589000 23877000 27509000 6 6 3 6 6 6 6 6 6 6 6 15639000 26754000 93074 24533000 21918000 18339000 20519000 14320000 12962000 15121000 18925000 14561000 24956000 1317900 25092000 20976000 18974000 20652000 14786000 13729000 14735000 18072000 4 4 1 4 4 4 4 4 4 4 4 11667000000 6105400000 5562000000 18020 1859 16555 91221;91222;91223;91224;91225;91226;91227;91228;91229;91230;91231 110299;110300;110301;110302;110303;110304;110305;110306;110307;110308;110309 110308 11 SSYISICNR Unmodified 1098.5128 0.51279309 89 O00451;O00451-3;O00451-2 GFRA2 GDNF family receptor alpha-2 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 37.333 37.699 2 6.1269E-06 8487 20211116_3447_TMUAki_TMT10x_S_F8 163.2 143.69 553890 884260 1464.5 919230 897310 890750 557360 806330 899580 629870 842590 515730 825230 51433 934870 851890 907300 593730 818800 898170 622440 814580 2 2 1 2 2 2 2 2 2 2 2 214260 345410 0 327510 594100 544810 275990 309910 329810 238860 313040 199490 322240 22420 338630 561610 536330 298250 324820 332570 236210 302500 1 1 0 1 1 1 1 1 1 1 1 339630 538850 1464.5 591720 303210 345940 281370 496420 569770 391020 529550 316240 503000 29013 596240 290280 370970 295480 493970 565590 386230 512080 1 1 1 1 1 1 1 1 1 1 1 28719000 14153000 14566000 18021 89 16556 91232;91233;91234 110310;110311;110312 110312 3 SSYYVVSGNDPAAEEPSR Unmodified 1926.8595 0.85954994 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.64 1.11 2 5 4 2 1 8 6 42.918 42.856 2;3 7.6312E-192 12811 20211116_3430_TMUAki_TMT10x_P_F3 435.94 411.09 6503300 9703400 68314 12929000 11891000 10359000 7243900 10620000 11411000 7355000 9854700 6055700 9066400 515610 12924000 11288000 10718000 7719700 10687000 11371000 7317800 9554700 13 13 9 13 13 13 13 13 13 13 13 3393300 4839100 42204 6363900 9496900 8189200 5086800 5051400 5435800 3452900 4659300 3159800 4521100 248080 6411800 8997700 8159500 5401100 5246400 5487200 3438200 4518700 6 6 4 6 6 6 6 6 6 6 6 3110000 4864300 26110 6565400 2393800 2170100 2157100 5568500 5974900 3902100 5195400 2895900 4545300 267520 6511900 2290600 2558200 2318600 5440300 5883700 3879700 5035900 7 7 5 7 7 7 7 7 7 7 7 2872100000 1967400000 904690000 18022 1057 16557 91235;91236;91237;91238;91239;91240;91241;91242;91243;91244;91245;91246;91247;91248 110313;110314;110315;110316;110317;110318;110319;110320;110321;110322;110323;110324;110325;110326;110327 110318 15 STACQMLVCYAK Oxidation (M) 1446.6305 0.63054174 84 O00410;O00410-2;O00410-3 IPO5 Importin-5 yes no 0 0 1 0 By MS/MS 7 0 1 1 46.028 46.578 3 0.0011739 13956 20211116_3435_TMUAki_TMT10x_P_F7 68.676 56.883 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18023 84 16558 91249 110328 110328 56 1 STACQMLVCYAK Unmodified 1430.6356 0.63562712 84 O00410;O00410-2;O00410-3 IPO5 Importin-5 yes no 0 0 0 0 By MS/MS 1 0 1 1 56.313 56.011 3 0.0009638 18544 20211116_3439_TMUAki_TMT10x_S_F1 72.089 55.147 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18024 84 16558 91250 110329 110329 1 STADALDDENTFK Acetyl (Protein N-term) 1467.6365 0.63653286 1130 P49959;P49959-2 MRE11A Double-strand break repair protein MRE11A yes no 1 0 0 0 By MS/MS 1 0 1 1 58.517 58.219 2 2.0873E-18 19442 20211116_3439_TMUAki_TMT10x_S_F1 99.788 82.557 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18025 1130 16559 91251 110330 110330 1 STAGDTHLGGEDFDNR Unmodified 1690.7183 0.71830543 615 P11142;P11142-2;P54652 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 2.1 1.37 5 2 1 1 1 7 3 32.853 32.779 2;3 6.5346E-93 8619 20211116_3429_TMUAki_TMT10x_P_F2 339.87 316.86 4149400 6717900 171730 11769000 22812000 9876500 5573300 6421900 10006000 3846000 9284200 3864800 6287400 764090 11622000 21451000 10101000 6691800 6626600 9959500 3862300 8978400 8 8 7 8 8 8 8 8 8 8 8 2692700 4245300 139040 7118400 21090000 8665900 3993000 4043600 6156400 2636100 5834800 2508200 3972000 609140 7082200 19801000 8628900 5011200 4302400 6157000 2632600 5638600 5 5 4 5 5 5 5 5 5 5 5 1456700 2472600 32681 4650900 1722500 1210600 1580300 2378300 3849300 1209800 3449300 1356600 2315300 154950 4539400 1650000 1471800 1680600 2324200 3802600 1229700 3339800 3 3 3 3 3 3 3 3 3 3 3 6634400000 5618400000 1015900000 18026 615 16560 91252;91253;91254;91255;91256;91257;91258;91259;91260;91261 110331;110332;110333;110334;110335;110336;110337;110338;110339 110334 9 STAGNFLVNPLEPK Unmodified 1485.7827 0.78274359 2553 Q96SB4;Q96SB4-3;Q96SB4-4 SRPK1 SRSF protein kinase 1 yes no 0 0 0 0 By MS/MS 7 0 1 1 66.365 66.739 3 0.068089 22691 20211116_3446_TMUAki_TMT10x_S_F7 38.808 12.684 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18027 2553 16561 91262 110340 110340 1 STANKYQVFFFGTHETAFLGPK Unmodified 2489.2379 0.23794545 1165 P51858;P51858-3;P51858-2 HDGF Hepatoma-derived growth factor yes no 0 0 0 1 By MS/MS 4 0 1 1 69.424 69.5 4 4.187E-07 22429 20211116_3431_TMUAki_TMT10x_P_F4 85.35 72.292 3606500 6344800 92586 4936800 3863900 10233000 4981000 5837400 5552800 5965400 5596000 3358700 5915100 388900 5215000 3738600 9999700 5011700 6160800 5625500 5820900 5397000 1 1 1 1 1 1 1 1 1 1 1 3606500 6344800 92586 4936800 3863900 10233000 4981000 5837400 5552800 5965400 5596000 3358700 5915100 388900 5215000 3738600 9999700 5011700 6160800 5625500 5820900 5397000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 826370000 826370000 0 18028 1165 16562 91263 110341 110341 1 STAPIAKPLATR Unmodified 1224.719 0.71902112 1755 Q15022 SUZ12 Polycomb protein SUZ12 yes yes 0 0 0 1 By MS/MS 2 0 1 1 35.552 35.326 3 0.041127 9621 20211116_3429_TMUAki_TMT10x_P_F2 51.009 33.277 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18029 1755 16563 91264 110342 110342 1 STAPLLDVFSSMLK Unmodified 1507.7956 0.79561646 2660 Q9BTC0;Q9BTC0-1 DIDO1 Death-inducer obliterator 1 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 81.649 81.595 3 7.0088E-05 29888 20211116_3441_TMUAki_TMT10x_S_F3 83.729 58.011 1299400 1913700 44163 1837900 1200800 1727900 1378500 574280 682790 785100 1369300 1210200 1785400 147510 1878600 1158500 1741200 1367400 648420 749430 758080 1299700 1 1 1 1 1 1 1 1 1 1 1 1299400 1913700 44163 1837900 1200800 1727900 1378500 574280 682790 785100 1369300 1210200 1785400 147510 1878600 1158500 1741200 1367400 648420 749430 758080 1299700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 175900000 175900000 0 18030 2660 16564 91265;91266 110343;110344 110344 2 STATTVAPAGIPATPGPVNPPPPEVSNPSKPGRK Acetyl (Protein N-term) 3330.7572 0.75720412 1766 Q15059;Q15059-2 BRD3 Bromodomain-containing protein 3 no no 1 0 0 2 By MS/MS 8 0 1 1 52.834 52.742 4 1 NaN NaN 3012600 4860400 58176 6061000 3093300 1552900 2460900 1252400 1270000 1775100 3387600 2805400 4539800 305110 6031000 2953600 1853300 2492400 1304100 1419300 1712200 3202400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3012600 4860400 58176 6061000 3093300 1552900 2460900 1252400 1270000 1775100 3387600 2805400 4539800 305110 6031000 2953600 1853300 2492400 1304100 1419300 1712200 3202400 2 2 2 2 2 2 2 2 2 2 2 465720000 0 465720000 18031 1766 16565 91267 0 STAYEDYYYHPPPR Unmodified 1757.7686 0.76855009 211 O43390;O43390-2;O43390-3;O43390-4 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 0 By MS/MS By MS/MS 4.91 2.07 2 1 2 2 1 1 2 6 5 39.558 39.646 3 5.7783E-19 11322 20211116_3435_TMUAki_TMT10x_P_F7 161.48 151.69 11539000 20570000 141000 27316000 29293000 28204000 17551000 19092000 20051000 15799000 18393000 10744000 19219000 1216500 27403000 27795000 28473000 18494000 19773000 20230000 15566000 17795000 19 19 6 19 19 19 19 19 19 19 19 8525700 15293000 122650 20706000 26476000 25760000 15107000 14696000 15124000 12018000 13729000 7938700 14291000 1008800 20817000 25104000 25683000 15919000 15420000 15336000 11847000 13287000 10 10 4 10 10 10 10 10 10 10 10 3013000 5276500 18351 6609500 2816900 2443500 2444300 4396100 4926900 3781200 4664700 2805300 4928500 207690 6586300 2691300 2790100 2575700 4352700 4894300 3718300 4508000 9 9 2 9 9 9 9 9 9 9 9 4294100000 3232500000 1061600000 18032 211 16566 91268;91269;91270;91271;91272;91273;91274;91275;91276;91277;91278 110345;110346;110347;110348;110349;110350;110351;110352;110353;110354;110355;110356;110357;110358;110359;110360;110361;110362;110363 110353 19 STCIYGGAPK Unmodified 1052.4961 0.4960804 710;2368 P17844;P17844-2;Q92841;Q92841-3;Q92841-1;Q92841-2 DDX5;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 no no 0 0 0 0 By MS/MS 6.67 0.471 1 2 3 35.126 35.403 2;3 3.9017E-09 9571 20211116_3435_TMUAki_TMT10x_P_F7 178.94 136.83 1818800 2936400 4178.4 2640500 3070600 2795300 1959200 1203700 1329300 1307200 1998000 1693300 2738800 141450 2717000 2914600 2802300 2025900 1307300 1403600 1272400 1906700 7 7 2 7 7 7 7 7 7 7 7 1818800 2936400 4178.4 2640500 3070600 2795300 1959200 1203700 1329300 1307200 1998000 1693300 2738800 141450 2717000 2914600 2802300 2025900 1307300 1403600 1272400 1906700 7 7 2 7 7 7 7 7 7 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 53623000 53623000 0 18033 710;2368 16567 91279;91280;91281 110364;110365;110366;110367;110368;110369;110370 110370 7 STDFAPIKEDFGQEK Unmodified 1710.8101 0.81008055 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.78 0.786 4 3 2 4 5 56.519 56.614 3;4 1.4331E-21 17061 20211116_3431_TMUAki_TMT10x_P_F4 179.81 150.19 71635000 118620000 878990 140610000 138230000 148700000 80155000 116350000 122920000 100430000 110820000 66705000 110770000 7555500 142010000 131120000 150260000 85665000 119460000 122750000 98742000 107280000 12 12 9 12 12 12 12 12 12 12 12 43545000 71358000 563380 83840000 118930000 128350000 65408000 71023000 75217000 60589000 66115000 40548000 66631000 5098000 85315000 112720000 126720000 69448000 74792000 75768000 59604000 64060000 7 7 5 7 7 7 7 7 7 7 7 28090000 47264000 315610 56770000 19297000 20343000 14747000 45332000 47704000 39842000 44710000 26157000 44138000 2457500 56698000 18405000 23533000 16216000 44665000 46982000 39138000 43223000 5 5 4 5 5 5 5 5 5 5 5 6132800000 3363700000 2769100000 18034 1057 16568 91282;91283;91284;91285;91286;91287;91288;91289;91290 110371;110372;110373;110374;110375;110376;110377;110378;110379;110380;110381;110382 110371 12 STELLIR Unmodified 830.48617 0.48616764 1421 P68431;Q71DI3;Q16695;P84243;Q6NXT2 HIST1H3A;HIST2H3A;HIST3H3;H3F3A;H3F3C Histone H3.1;Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.3C yes no 0 0 0 0 By MS/MS By MS/MS 4.5 2.17 2 2 2 3 3 2 2 2 9 9 41.517 41.609 2 0.0012651 10249 20211116_3445_TMUAki_TMT10x_S_F6 185.22 58.549 399090000 627210000 1911900 627550000 735610000 631120000 458970000 458800000 444210000 432300000 515960000 371520000 585250000 26593000 639910000 697540000 638850000 479550000 474380000 454820000 423300000 495500000 37 37 13 36 36 36 37 36 36 36 37 248710000 395030000 1258400 397370000 548350000 500160000 275030000 287460000 287520000 282430000 324890000 231520000 368620000 18101000 406760000 518470000 498410000 293650000 302850000 293280000 276050000 312250000 17 17 5 17 17 17 17 17 17 17 17 150380000 232170000 653460 230180000 187260000 130960000 183940000 171340000 156700000 149870000 191070000 140010000 216630000 8491500 233150000 179070000 140440000 185900000 171530000 161550000 147260000 183240000 20 20 8 19 19 19 20 19 19 19 20 321160000000 173840000000 147330000000 18035 1421 16569 91291;91292;91293;91294;91295;91296;91297;91298;91299;91300;91301;91302;91303;91304;91305;91306;91307;91308 110383;110384;110385;110386;110387;110388;110389;110390;110391;110392;110393;110394;110395;110396;110397;110398;110399;110400;110401;110402;110403;110404;110405;110406;110407;110408;110409;110410;110411;110412;110413;110414;110415;110416;110417;110418;110419 110414 37 STELLIRK Unmodified 958.58113 0.58113065 1421 P68431;Q71DI3;Q16695;P84243;Q6NXT2 HIST1H3A;HIST2H3A;HIST3H3;H3F3A;H3F3C Histone H3.1;Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.3C yes no 0 0 0 1 By MS/MS By MS/MS 5.29 2.81 2 2 1 2 4 3 38.781 38.994 3 0.00047416 9062 20211116_3447_TMUAki_TMT10x_S_F8 133.05 70.479 8767500 13175000 68781 13408000 12179000 10297000 8579800 10615000 10115000 9014000 11288000 8163700 12295000 809750 13616000 11589000 10689000 8938600 10728000 10264000 8869500 10853000 5 5 2 5 5 5 5 5 5 5 5 2868900 3982500 12394 4110800 3923500 4978300 2411400 3271500 3023200 2684700 3406900 2671200 3716600 250910 4197600 3723900 4979700 2544000 3394800 3062500 2646200 3274700 2 2 1 2 2 2 2 2 2 2 2 5898600 9192800 56388 9297600 8255400 5318500 6168400 7343300 7091300 6329300 7881300 5492500 8578200 558840 9418200 7865600 5709100 6394600 7333600 7201800 6223300 7578400 3 3 1 3 3 3 3 3 3 3 3 1684900000 857400000 827450000 18036 1421 16570 91309;91310;91311;91312;91313;91314;91315 110420;110421;110422;110423;110424;110425;110426 110426 7 STESLQANVQR Unmodified 1231.6157 0.61567826 813 P26373 RPL13 60S ribosomal protein L13 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.707 1 2 1 3 1 31.607 31.514 2;3 8.5163E-73 6986 20211116_3431_TMUAki_TMT10x_P_F4 346.85 298.5 4225400 7223300 0 7214800 5774800 5595800 4839100 3022500 4010700 2998200 5118800 3934100 6740000 346680 7336700 5512000 5742600 4931800 3202200 4155700 2929200 4903600 3 3 0 3 3 3 3 3 3 3 3 1911800 3279100 0 3253900 3458700 3786800 2306000 1392000 1906700 1469600 2411500 1779900 3059600 158600 3329300 3286000 3771000 2387000 1538400 1975100 1432100 2310700 2 2 0 2 2 2 2 2 2 2 2 2313600 3944200 0 3960900 2316100 1809000 2533200 1630500 2104000 1528600 2707200 2154200 3680400 188080 4007400 2226000 1971600 2544900 1663800 2180600 1497100 2592900 1 1 0 1 1 1 1 1 1 1 1 865350000 297510000 567840000 18037 813 16571 91316;91317;91318;91319 110427;110428;110429;110430 110427 4 STFFNVLTNSQASAENFPFCTIDPNESR Unmodified 3192.4458 0.44584232 2947 Q9NTK5;Q9NTK5-3 OLA1 Obg-like ATPase 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 3 3 3 3 80.311 80.321 3;4 3.1495E-25 25938 20211116_3447_TMUAki_TMT10x_S_F8 154.69 146.93 5892100 9717100 27918 9899000 6277600 7640300 7335600 4388700 4248800 4848200 7037000 5486200 9067800 507960 10052000 6046700 7849700 7289900 4640000 4556400 4716100 6702000 6 6 4 6 6 6 6 6 6 6 6 2986300 4651400 5670.9 4650100 2528400 4191600 3096000 1940500 1987100 2156000 3415800 2780500 4340200 237500 4737100 2438300 4247800 3076400 2093000 2120700 2096800 3250800 3 3 2 3 3 3 3 3 3 3 3 2905800 5065700 22247 5248900 3749200 3448700 4239600 2448200 2261700 2692200 3621300 2705700 4727500 270450 5314900 3608400 3601900 4213500 2547000 2435700 2619300 3451200 3 3 2 3 3 3 3 3 3 3 3 3243600000 1618200000 1625400000 18038 2947 16572 91320;91321;91322;91323;91324;91325 110431;110432;110433;110434;110435;110436 110435 6 STFSVEIVPICK Unmodified 1378.7166 0.71663786 2432 Q96D46 NMD3 60S ribosomal export protein NMD3 yes yes 0 0 0 0 By MS/MS 7 0 1 1 68.784 69.272 3 2.5572E-05 23240 20211116_3435_TMUAki_TMT10x_P_F7 90.653 55.766 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18039 2432 16573 91326 110437 110437 1 STFVLDEFK Unmodified 1084.5441 0.54407645 821 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 By MS/MS By MS/MS 4.62 0.992 1 3 2 2 5 3 67.056 67.05 2;3 1.586E-10 20835 20211116_3445_TMUAki_TMT10x_S_F6 219.51 175.37 78632000 128050000 231100 160990000 91189000 93283000 72345000 55623000 57776000 53886000 82174000 73210000 119600000 6156400 160890000 86928000 98361000 73917000 58402000 60280000 52699000 78515000 7 7 3 7 7 7 7 7 7 7 7 50100000 80089000 231100 97130000 72718000 77582000 52891000 32902000 33779000 33902000 53531000 46647000 74795000 4313400 97593000 69217000 79237000 54095000 35738000 35902000 33070000 51028000 4 4 3 4 4 4 4 4 4 4 4 28532000 47957000 0 63858000 18471000 15702000 19454000 22720000 23997000 19984000 28643000 26563000 44808000 1842900 63302000 17711000 19124000 19822000 22664000 24379000 19630000 27487000 3 3 0 3 3 3 3 3 3 3 3 6952400000 3652000000 3300400000 18040 821 16574 91327;91328;91329;91330;91331;91332;91333;91334 110438;110439;110440;110441;110442;110443;110444;110445;110446 110446 9 STFVLDEFKR Unmodified 1240.6452 0.64518747 821 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 1 By MS/MS By MS/MS 6.77 1.05 2 3 4 4 7 6 55.415 55.668 2;3 9.5819E-13 18100 20211116_3446_TMUAki_TMT10x_S_F7 222.42 175.99 156760000 265960000 937400 271120000 265280000 327160000 180920000 271740000 261510000 228540000 238670000 145950000 248190000 13987000 277060000 252210000 328590000 190420000 277790000 261700000 224980000 230950000 17 17 9 17 17 17 17 17 17 17 17 96754000 160690000 652660 163340000 208560000 274020000 135140000 166570000 159920000 139430000 142880000 90086000 149950000 9409600 168100000 198120000 269910000 141680000 173960000 161000000 137300000 138350000 10 10 5 10 10 10 10 10 10 10 10 60004000 105270000 284740 107790000 56723000 53149000 45781000 105170000 101590000 89103000 95797000 55867000 98238000 4577500 108970000 54091000 58684000 48737000 103820000 100700000 87685000 92591000 7 7 4 7 7 7 7 7 7 7 7 56002000000 28790000000 27212000000 18041 821 16575 91335;91336;91337;91338;91339;91340;91341;91342;91343;91344;91345;91346;91347 110447;110448;110449;110450;110451;110452;110453;110454;110455;110456;110457;110458;110459;110460;110461;110462;110463 110460 17 STFVNILK Unmodified 920.53312 0.53311783 830 P27707 DCK Deoxycytidine kinase yes yes 0 0 0 0 By MS/MS 2 0 1 1 61.385 61.147 2 0.0017878 18870 20211116_3440_TMUAki_TMT10x_S_F2 140.09 68.747 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18042 830 16576 91348 110464 110464 1 STGCDFAVSPK Unmodified 1167.523 0.52302343 1248 P55809;P55809-2 OXCT1 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial yes no 0 0 0 0 By MS/MS 5 0 1 1 41.917 41.997 3 0.081303 11446 20211116_3433_TMUAki_TMT10x_P_F5 40.589 24.698 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18043 1248 16577 91349 110465 110465 1 STGDIAGTVVPETNKEPR Unmodified 1869.9432 0.94321999 3098 Q9UDY2;Q9UDY2-2;Q9UDY2-5;Q9UDY2-4;Q9UDY2-6;Q9UDY2-3;Q9UDY2-7 TJP2 Tight junction protein ZO-2 yes no 0 0 0 1 By MS/MS 5 0 1 1 41.462 41.585 3 7.5724E-07 10140 20211116_3444_TMUAki_TMT10x_S_F5 93.152 73.548 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18044 3098 16578 91350 110466 110466 1 STGEAFVQFASK Unmodified 1270.6194 0.61936665 893 P31942;P31942-2;P31942-3 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes no 0 0 0 0 By MS/MS By MS/MS 6.08 0.954 4 4 3 1 6 6 57.246 57.514 2;3 1.7657E-38 18868 20211116_3446_TMUAki_TMT10x_S_F7 283.63 224.28 62301000 103570000 314520 110500000 91886000 104690000 69349000 99432000 98418000 86645000 93660000 58006000 96672000 5283000 112150000 87519000 106890000 72422000 100980000 98682000 85149000 90497000 10 10 4 10 10 10 10 10 10 10 10 30387000 48236000 228090 52805000 57115000 75656000 41511000 46025000 46166000 41023000 43783000 28292000 45027000 2694000 53889000 54359000 74998000 43067000 48141000 46678000 40271000 42310000 6 6 3 6 6 6 6 6 6 6 6 31914000 55338000 86438 57696000 34771000 29037000 27838000 53407000 52252000 45622000 49876000 29714000 51645000 2589000 58264000 33160000 31896000 29355000 52838000 52005000 44878000 48187000 4 4 1 4 4 4 4 4 4 4 4 16007000000 8194500000 7812700000 18045 893 16579 91351;91352;91353;91354;91355;91356;91357;91358;91359;91360;91361;91362 110467;110468;110469;110470;110471;110472;110473;110474;110475;110476;110477;110478;110479 110478 13 STGEAFVQFASQEIAEK Unmodified 1840.8843 0.88430813 894;1247 P31943;P55795 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 no no 0 0 0 0 By MS/MS By MS/MS 5 1.84 5 10 31 22 31 21 46 7 86 87 52.112 52.131 2;3 7.1137E-126 25092 20211116_3445_TMUAki_TMT10x_S_F6 393.37 343.26 597980000 997360000 2733300 884340000 675860000 909650000 713560000 640080000 639460000 674410000 755060000 556750000 930220000 45926000 910270000 648790000 919070000 719530000 665350000 657890000 657250000 724800000 159 159 93 158 159 158 159 158 159 159 159 326560000 525230000 831010 458580000 305740000 581710000 348720000 337570000 335240000 358230000 395890000 304030000 489840000 23109000 474380000 294030000 579520000 351060000 356160000 343800000 349020000 380020000 77 77 43 77 77 77 77 77 77 77 77 271410000 472130000 1902300 425760000 370110000 327940000 364840000 302520000 304220000 316180000 359170000 252720000 440380000 22817000 435890000 354760000 339550000 368480000 309200000 314090000 308230000 344780000 82 82 50 81 82 81 82 81 82 82 82 170670000000 99228000000 71446000000 18046 894;1247 16580 91363;91364;91365;91366;91367;91368;91369;91370;91371;91372;91373;91374;91375;91376;91377;91378;91379;91380;91381;91382;91383;91384;91385;91386;91387;91388;91389;91390;91391;91392;91393;91394;91395;91396;91397;91398;91399;91400;91401;91402;91403;91404;91405;91406;91407;91408;91409;91410;91411;91412;91413;91414;91415;91416;91417;91418;91419;91420;91421;91422;91423;91424;91425;91426;91427;91428;91429;91430;91431;91432;91433;91434;91435;91436;91437;91438;91439;91440;91441;91442;91443;91444;91445;91446;91447;91448;91449;91450;91451;91452;91453;91454;91455;91456;91457;91458;91459;91460;91461;91462;91463;91464;91465;91466;91467;91468;91469;91470;91471;91472;91473;91474;91475;91476;91477;91478;91479;91480;91481;91482;91483;91484;91485;91486;91487;91488;91489;91490;91491;91492;91493;91494;91495;91496;91497;91498;91499;91500;91501;91502;91503;91504;91505;91506;91507;91508;91509;91510;91511;91512;91513;91514;91515;91516;91517;91518;91519;91520;91521;91522;91523;91524;91525;91526;91527;91528;91529;91530;91531;91532;91533;91534;91535 110480;110481;110482;110483;110484;110485;110486;110487;110488;110489;110490;110491;110492;110493;110494;110495;110496;110497;110498;110499;110500;110501;110502;110503;110504;110505;110506;110507;110508;110509;110510;110511;110512;110513;110514;110515;110516;110517;110518;110519;110520;110521;110522;110523;110524;110525;110526;110527;110528;110529;110530;110531;110532;110533;110534;110535;110536;110537;110538;110539;110540;110541;110542;110543;110544;110545;110546;110547;110548;110549;110550;110551;110552;110553;110554;110555;110556;110557;110558;110559;110560;110561;110562;110563;110564;110565;110566;110567;110568;110569;110570;110571;110572;110573;110574;110575;110576;110577;110578;110579;110580;110581;110582;110583;110584;110585;110586;110587;110588;110589;110590;110591;110592;110593;110594;110595;110596;110597;110598;110599;110600;110601;110602;110603;110604;110605;110606;110607;110608;110609;110610;110611;110612;110613;110614;110615;110616;110617;110618;110619;110620;110621;110622;110623;110624;110625;110626;110627;110628;110629;110630;110631;110632;110633;110634;110635;110636;110637;110638;110639;110640;110641;110642;110643;110644;110645;110646;110647;110648;110649;110650;110651;110652;110653;110654;110655;110656;110657;110658;110659;110660;110661;110662;110663;110664;110665;110666;110667;110668;110669;110670;110671;110672;110673;110674;110675;110676;110677;110678;110679;110680;110681;110682;110683 110650 204 STGFETLVVTSEDGITK Unmodified 1782.8887 0.8887248 342 O75521;O75521-2 ECI2 Enoyl-CoA delta isomerase 2, mitochondrial yes no 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 71.04 70.947 3 3.513E-07 22930 20211116_3431_TMUAki_TMT10x_P_F4 102.78 82.395 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18047 342 16581 91536;91537 110684;110685 110685 2 STGGAPTFNVTVTK Unmodified 1378.7092 0.70924429 540 P07737 PFN1 Profilin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 2.54 4 1 5 4 4 9 9 50.594 50.731 2;3 3.6694E-61 13842 20211116_3447_TMUAki_TMT10x_S_F8 313.87 260.1 145350000 229050000 699340 300270000 225500000 201210000 151880000 130100000 128800000 125860000 176310000 135320000 213990000 11090000 299810000 214260000 209490000 157200000 135740000 133730000 122950000 168610000 18 18 8 18 18 18 18 18 18 17 18 87832000 136170000 262790 174650000 179300000 157170000 98307000 75057000 78158000 74545000 106760000 81771000 127210000 7349800 175190000 169800000 159350000 103330000 80442000 81409000 72826000 102100000 9 9 4 9 9 9 9 9 9 9 9 57514000 92872000 436550 125620000 46203000 44038000 53578000 55041000 50643000 51312000 69548000 53548000 86782000 3740400 124620000 44461000 50142000 53870000 55295000 52320000 50127000 66505000 9 9 4 9 9 9 9 9 9 8 9 52330000000 29580000000 22749000000 18048 540 16582 91538;91539;91540;91541;91542;91543;91544;91545;91546;91547;91548;91549;91550;91551;91552;91553;91554;91555 110686;110687;110688;110689;110690;110691;110692;110693;110694;110695;110696;110697;110698;110699;110700;110701;110702;110703;110704;110705;110706 110706 21 STGGAPTFNVTVTKTDK Unmodified 1722.8788 0.87882882 540 P07737 PFN1 Profilin-1 yes yes 0 0 0 1 By MS/MS By MS/MS 6.71 2.37 1 2 4 3 4 46.317 46.444 3;4 5.0893E-47 12143 20211116_3447_TMUAki_TMT10x_S_F8 238.94 206.76 40119000 59138000 226850 57576000 59407000 52388000 37105000 44742000 39350000 37604000 48695000 37355000 55176000 3690100 58770000 56408000 53518000 38873000 45663000 40265000 37020000 46685000 11 11 7 11 11 11 11 11 11 11 11 23201000 32841000 97510 32035000 31891000 37996000 21329000 24891000 21494000 20790000 25896000 21602000 30641000 2064200 32827000 30314000 38046000 22192000 25846000 22016000 20473000 24844000 4 4 2 4 4 4 4 4 4 4 4 16918000 26297000 129340 25541000 27516000 14392000 15776000 19851000 17856000 16814000 22799000 15753000 24535000 1625900 25943000 26094000 15472000 16681000 19817000 18250000 16547000 21841000 7 7 5 7 7 7 7 7 7 7 7 3891300000 2251500000 1639800000 18049 540 16583 91556;91557;91558;91559;91560;91561;91562 110707;110708;110709;110710;110711;110712;110713;110714;110715;110716;110717 110715 11 STGGDFGNPLRK Acetyl (Protein N-term) 1289.6364 0.6364137 742;743 P20340;P20340-3;P20340-2 RAB6A Ras-related protein Rab-6A no no 1 0 0 1 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 44.851 44.989 2 1.1844E-15 12634 20211116_3433_TMUAki_TMT10x_P_F5 109.44 88.537 9158200 14559000 125510 21447000 22534000 17600000 10818000 15471000 18291000 11495000 15806000 8528000 13611000 886330 21335000 21319000 18119000 11817000 15718000 18192000 11390000 15325000 6 6 4 6 6 6 6 6 6 6 6 4672700 7143500 101830 10797000 19352000 14719000 7583300 7748200 9175800 5798000 7649700 4351500 6679300 687890 10815000 18265000 14596000 8356700 8171200 9211000 5743000 7426600 3 3 3 3 3 3 3 3 3 3 3 4485400 7415200 23678 10650000 3182400 2881000 3234300 7722400 9114800 5696500 8156600 4176500 6931200 198440 10520000 3053400 3522900 3460000 7546700 8981400 5646900 7898100 3 3 1 3 3 3 3 3 3 3 3 1575100000 1034300000 540820000 18050 742;743 16584 91563;91564;91565;91566;91567;91568 110718;110719;110720;110721;110722;110723 110719 6 STGLELETPSLVPVKK Unmodified 1696.9611 0.96110188 2540 Q96QC0 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 yes yes 0 0 0 1 By MS/MS 7 0 1 1 60.178 60.902 3 5.6958E-10 19725 20211116_3435_TMUAki_TMT10x_P_F7 114.69 93.44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18051 2540 16585 91569 110724 110724 1 STGNFLTLTQAIDK Unmodified 1507.7882 0.7882229 3064 Q9P2J5;Q9P2J5-2;Q9P2J5-3 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 8 0 3 2 1 71.133 71.118 2;3 4.2549E-33 22791 20211116_3436_TMUAki_TMT10x_P_F8 230.14 177.86 13805000 23340000 8700 22655000 17383000 20621000 15591000 13252000 13242000 14870000 18324000 12852000 21776000 1029600 23130000 16612000 20967000 15836000 13894000 13754000 14456000 17519000 3 3 1 3 3 3 3 3 3 3 3 6698900 10672000 8700 10557000 8001100 12530000 6996900 6581600 6813400 7491900 8118700 6237000 9957300 527880 10808000 7643600 12510000 7144100 7019100 6985900 7279500 7791400 2 2 1 2 2 2 2 2 2 2 2 7106000 12668000 0 12098000 9381700 8090500 8594300 6670500 6428100 7378300 10205000 6615400 11818000 501740 12322000 8968000 8457400 8691700 6875000 6768300 7176900 9727500 1 1 0 1 1 1 1 1 1 1 1 2683500000 1812400000 871150000 18052 3064 16586 91570;91571;91572 110725;110726;110727 110726 3 STGNFLTLTQAIDKFSADGMR Oxidation (M) 2288.1107 0.11069602 3064 Q9P2J5;Q9P2J5-2;Q9P2J5-3 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 1 1 By MS/MS 2 0 1 1 77.628 77.578 3 3.3781E-07 26777 20211116_3429_TMUAki_TMT10x_P_F2 89.011 79.757 3399100 6619700 0 4166400 5285900 13075000 6766900 10778000 9929200 9247000 6712700 3164700 6167700 287360 4556900 5104300 12719000 6884400 11028000 9848700 9094200 6575100 1 1 0 1 1 1 1 1 1 1 1 3399100 6619700 0 4166400 5285900 13075000 6766900 10778000 9929200 9247000 6712700 3164700 6167700 287360 4556900 5104300 12719000 6884400 11028000 9848700 9094200 6575100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1963500000 1963500000 0 18053 3064 16587 91573 110728 110728 3110 1 STGSFVGELMYK Oxidation (M) 1333.6224 0.62240312 3141 Q9UJS0;Q9UJS0-2 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes no 0 0 1 0 By MS/MS 6 0 1 1 56.854 56.933 3 0.013162 16284 20211116_3434_TMUAki_TMT10x_P_F6 61.235 47.077 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18054 3141 16588 91574 110729 110729 3158 1 STGSFVGELMYK Unmodified 1317.6275 0.6274885 3141 Q9UJS0;Q9UJS0-2 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes no 0 0 0 0 By MS/MS 7 0 1 1 66.309 66.683 2 8.2638E-18 22668 20211116_3446_TMUAki_TMT10x_S_F7 185.08 156.87 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18055 3141 16588 91575 110730 110730 1 STGTFVVSQPLNYR Acetyl (Protein N-term) 1609.81 0.81002097 1088 P49189 ALDH9A1 4-trimethylaminobutyraldehyde dehydrogenase yes yes 1 0 0 0 By MS/MS 6 0 1 1 64.287 64.254 2 1.1053E-19 19690 20211116_3445_TMUAki_TMT10x_S_F6 91.095 70.954 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18056 1088 16589 91576 110731 110731 1 STGVFQDEELLFSHK Unmodified 1735.8417 0.84171503 1960 Q9Y4E1;Q641Q2;Q9Y4E1-5;Q9Y4E1-3;Q9Y4E1-6;Q9Y4E1-2;Q9Y4E1-1;Q641Q2-2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 64.773 64.891 3 1.2987E-06 20518 20211116_3431_TMUAki_TMT10x_P_F4 105.31 91.35 2351600 4201300 36199 3453400 2587800 5313500 3046000 2917300 2802100 2810300 3536100 2189900 3917500 232010 3603700 2495000 5244500 3058100 3083800 2887400 2749100 3388400 1 1 1 1 1 1 1 1 1 1 1 2351600 4201300 36199 3453400 2587800 5313500 3046000 2917300 2802100 2810300 3536100 2189900 3917500 232010 3603700 2495000 5244500 3058100 3083800 2887400 2749100 3388400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 664490000 664490000 0 18057 1960 16590 91577;91578 110732 110732 1 STHSELLEDYYQSGR Unmodified 1783.8013 0.80130678 840 P28288 ABCD3 ATP-binding cassette sub-family D member 3 yes yes 0 0 0 0 By MS/MS By MS/MS 4 1 1 1 1 1 40.726 40.78 3 1.1889E-14 12025 20211116_3430_TMUAki_TMT10x_P_F3 153.94 140.96 109700 162320 2662.5 194120 282360 222400 141490 115510 122240 108300 154490 102160 151590 13995 196210 267360 222420 150290 122620 126350 106070 148040 1 1 1 1 1 1 1 1 1 1 1 109700 162320 2662.5 194120 282360 222400 141490 115510 122240 108300 154490 102160 151590 13995 196210 267360 222420 150290 122620 126350 106070 148040 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 54174000 54174000 0 18058 840 16591 91579;91580 110733;110734 110733 2 STIGAYFLKPK Unmodified 1223.6914 0.69140938 2259 Q8NI36 WDR36 WD repeat-containing protein 36 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0 3 1 2 57.187 57.346 3 6.4777E-08 17604 20211116_3433_TMUAki_TMT10x_P_F5 121.08 79.536 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18059 2259 16592 91581;91582;91583 110735;110736;110737 110735 3 STIGGQIMYLTGMVDKR Unmodified 1868.9488 0.94883941 681 P15170-3;P15170-2;P15170 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 73.957 73.924 3 2.0004E-15 24638 20211116_3442_TMUAki_TMT10x_S_F4 150.23 3.1251 19922000 31504000 53249 32154000 22723000 18450000 23179000 8722900 7232300 9345300 19179000 18547000 29399000 1484100 32552000 21786000 19422000 22994000 9378300 8479300 9101500 18132000 4 4 1 4 4 4 4 4 4 4 4 9952300 15281000 0 15149000 9769100 11756000 12605000 4512400 3927200 4900500 9201100 9265100 14258000 630330 15413000 9425800 12023000 12369000 4965100 4562100 4770100 8712700 2 2 0 2 2 2 2 2 2 2 2 9969200 16223000 53249 17006000 12954000 6693100 10574000 4210400 3305100 4444800 9978100 9282200 15141000 853810 17139000 12360000 7398800 10625000 4413200 3917200 4331400 9418900 2 2 1 2 2 2 2 2 2 2 2 1224800000 582180000 642600000 18060 681 16593 91584;91585 110738;110739;110740;110741 110740 4 STIGVEFATR Unmodified 1079.5611 0.56112349 1836 Q15907;P62491;P62491-2;Q15907-2 RAB11B;RAB11A Ras-related protein Rab-11B;Ras-related protein Rab-11A yes no 0 0 0 0 By MS/MS By MS/MS 4.78 1.31 2 2 2 2 1 4 5 45.287 45.404 2 6.7676E-14 12858 20211116_3433_TMUAki_TMT10x_P_F5 222.22 176.73 88653000 135080000 226170 145310000 126220000 134950000 93913000 98077000 89105000 88325000 106410000 82538000 126080000 7071900 147360000 120160000 137290000 96800000 101290000 91474000 86664000 102110000 16 16 6 16 16 16 16 16 16 16 16 58685000 86992000 179150 92827000 93272000 107590000 62847000 67040000 60841000 58656000 70231000 54637000 81194000 4792200 94507000 88632000 107780000 65277000 69957000 62316000 57632000 67459000 10 10 3 10 10 10 10 10 10 10 10 29967000 48084000 47021 52480000 32949000 27366000 31066000 31037000 28265000 29668000 36179000 27901000 44884000 2279700 52852000 31530000 29510000 31523000 31330000 29158000 29032000 34656000 6 6 3 6 6 6 6 6 6 6 6 7838400000 3699000000 4139400000 18061 1836 16594 91586;91587;91588;91589;91590;91591;91592;91593;91594 110742;110743;110744;110745;110746;110747;110748;110749;110750;110751;110752;110753;110754;110755;110756;110757 110749 16 STIIGESISR Unmodified 1061.5717 0.57168818 1218 P54136;P54136-2 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 4.25 1.09 1 2 1 2 2 40.087 40.192 2 1.277E-06 10858 20211116_3442_TMUAki_TMT10x_S_F4 155.42 103.55 8951200 13102000 3584.1 16378000 23796000 18351000 11295000 10587000 12579000 9748900 13276000 8333800 12238000 870810 16507000 22497000 18399000 12150000 11131000 12765000 9555800 12785000 4 4 2 4 4 4 4 4 4 4 4 7124900 10160000 3584.1 12863000 22200000 16940000 9611900 8597700 10289000 7832800 10484000 6633400 9490200 723020 12992000 20964000 16818000 10429000 9139700 10444000 7681400 10108000 3 3 2 3 3 3 3 3 3 3 3 1826300 2942400 0 3515300 1596400 1411400 1683100 1989500 2290200 1916100 2791400 1700500 2747700 147790 3514300 1532800 1580700 1721500 1991500 2321100 1874400 2677300 1 1 0 1 1 1 1 1 1 1 1 444310000 286740000 157570000 18062 1218 16595 91595;91596;91597;91598 110758;110759;110760;110761;110762 110761 5 STLDIVLANK Unmodified 1072.6128 0.61282471 791 P23921 RRM1 Ribonucleoside-diphosphate reductase large subunit yes yes 0 0 0 0 By MS/MS 6 0 1 1 63.422 63.401 3 0.00045209 19362 20211116_3445_TMUAki_TMT10x_S_F6 93.111 68.775 1004900 1481900 2442 1976400 870070 743580 877110 663980 588300 652650 961570 935720 1384600 83703 1962900 834590 831760 880390 678770 624380 637870 916040 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1004900 1481900 2442 1976400 870070 743580 877110 663980 588300 652650 961570 935720 1384600 83703 1962900 834590 831760 880390 678770 624380 637870 916040 1 1 1 1 1 1 1 1 1 1 1 116820000 0 116820000 18063 791 16596 91599 110763 110763 1 STLDIVLANKDR Unmodified 1343.7409 0.74087877 791 P23921 RRM1 Ribonucleoside-diphosphate reductase large subunit yes yes 0 0 0 1 By MS/MS 7 0 1 1 52.76 53.468 3 0.003176 16720 20211116_3435_TMUAki_TMT10x_P_F7 66.533 54.319 3461400 5673800 0 3934600 6546200 8971400 5389100 5491000 4786100 4497300 5147600 3222800 5287700 322940 4212100 6247200 8750500 5508200 5728700 4908200 4433300 4954500 1 1 0 1 1 1 1 1 1 1 1 3461400 5673800 0 3934600 6546200 8971400 5389100 5491000 4786100 4497300 5147600 3222800 5287700 322940 4212100 6247200 8750500 5508200 5728700 4908200 4433300 4954500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 404670000 404670000 0 18064 791 16597 91600 110764 110764 1 STLEPVEK Unmodified 901.47566 0.47566253 596;701 P0DMV8;P0DMV9;P0DMV8-2;P17066;P48741 HSPA1A;HSPA1B;HSPA6;HSPA7 Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 no no 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 37.784 37.703 2 0.0011946 12202 20211116_3441_TMUAki_TMT10x_S_F3 126.41 67.495 1513000 2655500 5560.8 2613400 2043400 1725100 2142500 1665700 1797800 1684900 2174200 1408600 2477700 109060 2655800 1960200 1810800 2157400 1697200 1857400 1644800 2085700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1513000 2655500 5560.8 2613400 2043400 1725100 2142500 1665700 1797800 1684900 2174200 1408600 2477700 109060 2655800 1960200 1810800 2157400 1697200 1857400 1644800 2085700 2 2 1 2 2 2 2 2 2 2 2 59962000 0 59962000 18065 596;701 16598 91601;91602 110765;110766 110766 2 STLFVPR Unmodified 818.46504 0.46503826 646 P12955;P12955-2 PEPD Xaa-Pro dipeptidase yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 43.286 43.089 2 0.039945 11243 20211116_3428_TMUAki_TMT10x_P_F1 68.915 37.857 701200 1093400 12040 1305900 552580 596560 617860 880180 864220 734860 1002300 652980 1021100 67274 1306600 532210 657860 630940 876250 873310 723690 962600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 701200 1093400 12040 1305900 552580 596560 617860 880180 864220 734860 1002300 652980 1021100 67274 1306600 532210 657860 630940 876250 873310 723690 962600 1 1 1 1 1 1 1 1 1 1 1 39198000 0 39198000 18066 646 16599 91603;91604 110767;110768 110767 2 STLINSLFLTDLYPER Unmodified 1880.9884 0.98837927 1752 Q15019;Q15019-2;Q15019-3 SEPT2 Septin-2 yes no 0 0 0 0 By MS/MS By MS/MS 4.61 2.89 4 4 1 1 4 4 8 10 75.961 75.959 2;3 4.5187E-93 25905 20211116_3447_TMUAki_TMT10x_S_F8 344.47 294.36 64880000 108360000 1730200 104130000 80011000 107000000 84813000 71840000 68366000 75029000 86350000 60418000 101090000 6652000 106570000 76908000 108040000 85269000 74912000 70908000 73146000 82742000 21 21 10 21 21 21 21 21 21 21 21 34718000 57359000 782470 54204000 35078000 68836000 41931000 37292000 36421000 39902000 44927000 32329000 53511000 3337900 55739000 33836000 68514000 42004000 39586000 37595000 38863000 43076000 10 10 6 10 10 10 10 10 10 10 10 30162000 50996000 947680 49927000 44933000 38165000 42881000 34548000 31945000 35127000 41423000 28089000 47581000 3314100 50834000 43071000 39524000 43265000 35326000 33313000 34283000 39666000 11 11 4 11 11 11 11 11 11 11 11 24195000000 14366000000 9829300000 18067 1752 16600 91605;91606;91607;91608;91609;91610;91611;91612;91613;91614;91615;91616;91617;91618;91619;91620;91621;91622 110769;110770;110771;110772;110773;110774;110775;110776;110777;110778;110779;110780;110781;110782;110783;110784;110785;110786;110787;110788;110789;110790;110791;110792 110791 24 STLINSLFLTDLYSPEYPGPSHR Unmodified 2606.3017 0.30166791 1838 Q16181;Q16181-2 SEPT7 Septin-7 yes no 0 0 0 0 By MS/MS By MS/MS 2.33 2.56 4 1 1 3 3 78.877 78.857 3;4 3.9989E-08 25801 20211116_3428_TMUAki_TMT10x_P_F1 99.13 89.381 27077000 46180000 87578 42397000 25792000 35626000 31299000 21406000 22054000 24551000 31972000 25211000 43077000 2140400 43418000 24863000 36392000 31174000 22576000 23192000 23848000 30535000 5 5 2 5 5 5 5 5 5 5 5 10905000 18934000 25362 18159000 10309000 19814000 13169000 9558000 9671300 10890000 13339000 10153000 17665000 835420 18605000 9952500 19853000 13100000 10275000 10122000 10581000 12754000 3 3 1 3 3 3 3 3 3 3 3 16172000 27246000 62216 24238000 15483000 15812000 18130000 11848000 12382000 13661000 18633000 15058000 25412000 1304900 24814000 14911000 16539000 18074000 12300000 13070000 13267000 17781000 2 2 1 2 2 2 2 2 2 2 2 5988700000 2655600000 3333200000 18068 1838 16601 91623;91624;91625;91626;91627;91628 110793;110794;110795;110796;110797;110798 110793 6 STLINTLFK Unmodified 1035.5964 0.59644637 3118 Q9UHD8-5;Q9UHD8;Q9UHD8-2;Q9UHD8-7;Q9UHD8-3;Q9UHD8-4;Q9UHD8-9;Q9UHD8-8 SEPT9 Septin-9 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 71.544 71.369 2 6.1895E-06 25869 20211116_3441_TMUAki_TMT10x_S_F3 166.07 127.77 21663000 38183000 477810 27769000 33109000 43015000 20184000 26048000 25230000 22447000 24898000 20172000 35590000 2179800 28634000 31436000 42499000 20740000 26508000 25424000 22072000 24028000 4 4 3 3 4 4 3 3 3 3 4 9692300 16092000 162720 8574600 19370000 28804000 8580700 8733500 8358200 7909600 7936200 9023900 14987000 868890 8922200 18297000 27645000 8695000 9143000 8487000 7758800 7668900 2 2 1 1 2 2 1 1 1 1 2 11970000 22092000 315100 19194000 13740000 14211000 11604000 17315000 16872000 14538000 16962000 11148000 20603000 1310900 19712000 13139000 14854000 12045000 17365000 16937000 14313000 16360000 2 2 2 2 2 2 2 2 2 2 2 2946100000 1638700000 1307300000 18069 3118 16602 91629;91630;91631;91632 110799;110800;110801;110802 110801 4 STLLGVLTHGELDNGR Unmodified 1680.8795 0.87949752 67 O00178 GTPBP1 GTP-binding protein 1 yes yes 0 0 0 0 By matching By MS/MS 6 0 2 1 1 63.311 63.309 3 1.0236E-15 19168 20211116_3445_TMUAki_TMT10x_S_F6 156.72 146.76 6472800 10907000 133510 10478000 8410100 7427200 6958900 11280000 11325000 10547000 9995600 6027800 10175000 688200 10674000 8035600 7841100 7269700 11252000 11283000 10331000 9683500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6472800 10907000 133510 10478000 8410100 7427200 6958900 11280000 11325000 10547000 9995600 6027800 10175000 688200 10674000 8035600 7841100 7269700 11252000 11283000 10331000 9683500 2 2 2 2 2 2 2 2 2 2 2 972480000 496560000 475920000 18070 67 16603 91633;91634 110803;110804 110803 2 STLLINQPQYAWLK Acetyl (Protein N-term) 1715.9247 0.9246568 1098 P49419-2 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes yes 1 0 0 0 By MS/MS 8 0 1 1 80.735 80.739 2 0.0088091 26697 20211116_3436_TMUAki_TMT10x_P_F8 42.743 12.489 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18071 1098 16604 91635 110805 110805 1 STLLLLLTGK Unmodified 1057.6747 0.67469669 2241 Q8NE71;Q8NE71-2 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 80.108 80.102 2 1.6775E-17 25767 20211116_3434_TMUAki_TMT10x_P_F6 220.39 159.63 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18072 2241 16605 91636;91637 110806;110807 110806 2 STLNEIYFGK Unmodified 1170.5921 0.59208927 1063 P47756-2;P47756 CAPZB F-actin-capping protein subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 6.95 0.669 1 2 14 3 4 16 67.47 67.645 2;3 3.4495E-11 19585 20211116_3435_TMUAki_TMT10x_P_F7 212.21 162.79 70427000 115920000 312360 133180000 96960000 115410000 76664000 103640000 85130000 82511000 88984000 65571000 108230000 5857900 134380000 92451000 117220000 79087000 105340000 86355000 80845000 85720000 26 26 15 26 25 25 26 26 25 25 26 38400000 61682000 196810 69059000 70530000 91992000 53485000 52210000 52556000 48730000 51891000 35754000 57584000 3585500 70273000 67196000 91407000 55115000 54987000 53484000 47735000 50078000 6 6 4 6 6 6 6 6 6 6 6 32027000 54241000 115550 64119000 26430000 23423000 23179000 51434000 32574000 33781000 37093000 29818000 50649000 2272300 64105000 25255000 25817000 23972000 50353000 32871000 33110000 35642000 20 20 11 20 19 19 20 20 19 19 20 6496300000 3422800000 3073500000 18073 1063 16606 91638;91639;91640;91641;91642;91643;91644;91645;91646;91647;91648;91649;91650;91651;91652;91653;91654;91655;91656;91657 110808;110809;110810;110811;110812;110813;110814;110815;110816;110817;110818;110819;110820;110821;110822;110823;110824;110825;110826;110827;110828;110829;110830;110831;110832;110833;110834;110835;110836 110811 29 STLNPQWNESFTFK Unmodified 1697.8049 0.80493559 704 P17252 PRKCA Protein kinase C alpha type yes yes 0 0 0 0 By MS/MS 8 0 1 1 69.141 69.242 3 1.5849E-06 21967 20211116_3436_TMUAki_TMT10x_P_F8 90.367 70.26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18074 704 16607 91658 110837 110837 1 STLQTMESDIYTEVR Oxidation (M) 1787.8247 0.82474434 1536 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 1 0 By MS/MS By MS/MS 2.12 0.781 2 3 3 3 5 49.473 49.21 2;3 5.2447E-27 13955 20211116_3440_TMUAki_TMT10x_S_F2 167.2 151.57 2611900 4313300 10565 4220000 3070300 3967200 2662400 3759000 3867000 3295000 3955800 2431900 4024400 215100 4307900 2933200 4052500 2759200 3818500 3884500 3237100 3813300 3 3 2 3 3 3 3 3 3 3 3 1161600 1917000 0 1844900 1712100 2576900 1546900 1476000 1436200 1317500 1594200 1081500 1788500 86309 1898200 1636400 2555300 1574300 1551500 1471600 1293300 1533000 1 1 0 1 1 1 1 1 1 1 1 1450300 2396300 10565 2375100 1358200 1390400 1115500 2283000 2430800 1977400 2361600 1350400 2235900 128800 2409700 1296800 1497200 1184900 2267000 2412900 1943900 2280300 2 2 2 2 2 2 2 2 2 2 2 1127200000 638830000 488380000 18075 1536 16608 91659;91660;91661;91662;91663;91664;91665;91666 110838;110839;110840;110841;110842;110843 110842 2070 6 STLQTMESDIYTEVR Unmodified 1771.8298 0.82982971 1536 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 0 By MS/MS 2 0 1 1 69.004 68.704 2 2.3502E-06 23234 20211116_3429_TMUAki_TMT10x_P_F2 99.834 82.509 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18076 1536 16608 91667 110844 110844 1 STLTDSLVCK Unmodified 1122.5591 0.55907458 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.75 0.661 3 4 1 4 4 50.622 50.815 2;3 8.2029E-11 14116 20211116_3445_TMUAki_TMT10x_S_F6 203.19 156.62 45104000 67580000 385510 93745000 108330000 75703000 49305000 56652000 59825000 44529000 75090000 41998000 63157000 4843000 93517000 102400000 77806000 53424000 58198000 60943000 43989000 71964000 12 12 8 12 12 12 12 12 12 12 12 26136000 37987000 308170 51941000 91481000 64059000 34425000 32169000 34421000 25245000 41181000 24337000 35498000 3336900 52184000 86299000 63795000 37902000 34109000 35258000 24941000 39517000 7 7 6 7 7 7 7 7 7 7 7 18967000 29593000 77339 41804000 16848000 11644000 14880000 24483000 25404000 19283000 33909000 17660000 27659000 1506100 41333000 16102000 14011000 15522000 24089000 25685000 19047000 32447000 5 5 2 5 5 5 5 5 5 5 5 3905900000 2372300000 1533600000 18077 653 16609 91668;91669;91670;91671;91672;91673;91674;91675 110845;110846;110847;110848;110849;110850;110851;110852;110853;110854;110855;110856 110854 12 STLYVSPHPDAFPSLR Acetyl (Protein N-term) 1827.9155 0.91554867 820 P26640 VARS Valine--tRNA ligase yes yes 1 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 63.847 63.895 2 3.0626E-69 19214 20211116_3444_TMUAki_TMT10x_S_F5 232 209.91 6298800 10258000 127250 10757000 7908300 10835000 7782600 8439600 7611900 8303300 8721800 5865600 9574100 651080 10940000 7586600 10979000 7895500 8697600 7790700 8115000 8379200 7 7 5 7 7 7 7 7 7 7 7 3965600 6137100 70913 6784200 5054000 7959900 5273900 4991800 4313100 4916700 5359700 3692800 5729000 398590 6892900 4855100 7969800 5308300 5222900 4467000 4805000 5137900 4 4 3 4 4 4 4 4 4 4 4 2333200 4121400 56336 3973200 2854300 2875100 2508700 3447800 3298800 3386600 3362100 2172800 3845100 252500 4047300 2731500 3009500 2587200 3474700 3323600 3310100 3241400 3 3 2 3 3 3 3 3 3 3 3 2510100000 1352600000 1157500000 18078 820 16610 91676;91677;91678;91679;91680 110857;110858;110859;110860;110861;110862;110863;110864 110862 8 STMDNPTTTQYASLMHSFILK 2 Oxidation (M) 2417.1243 0.12429718 2884 Q9NP97 DYNLRB1 Dynein light chain roadblock-type 1 yes yes 0 0 2 0 By MS/MS 8 0 1 1 59.607 59.609 3 8.0735E-05 17544 20211116_3447_TMUAki_TMT10x_S_F8 66.636 57.473 2388000 5221400 79652 4397300 3649900 4019000 2775400 3804800 4006400 3835300 4147300 2224100 4869100 289890 4538500 3482500 4112800 2899000 3880200 4027000 3744500 3996400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2388000 5221400 79652 4397300 3649900 4019000 2775400 3804800 4006400 3835300 4147300 2224100 4869100 289890 4538500 3482500 4112800 2899000 3880200 4027000 3744500 3996400 2 2 2 2 2 2 2 2 2 2 2 288530000 0 288530000 18079 2884 16611 91681 110865;110866 110866 3002;3003 2 STNGDTFLGGEDFDQALLR Unmodified 2054.9545 0.95451296 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 2.86 1.25 4 4 6 5 2 10 11 74.912 74.838 2;3 1.1183E-215 26169 20211116_3430_TMUAki_TMT10x_P_F3 467.62 418.12 113030000 198190000 487980 163360000 132080000 193860000 139610000 147860000 155160000 153440000 156410000 105230000 184810000 7817100 169570000 126760000 194570000 141700000 152820000 157210000 149630000 150850000 28 28 10 28 28 28 28 28 28 28 28 60065000 102430000 112290 82263000 58835000 122690000 70733000 74756000 80317000 79405000 81005000 55921000 95503000 3444600 85951000 56667000 121410000 71422000 78565000 81313000 77360000 78121000 14 14 5 14 14 14 14 14 14 14 14 52960000 95764000 375690 81096000 73242000 71171000 68874000 73099000 74846000 74033000 75408000 49309000 89303000 4372500 83619000 70098000 73159000 70275000 74253000 75901000 72266000 72726000 14 14 5 14 14 14 14 14 14 14 14 43402000000 23304000000 20098000000 18080 972 16612 91682;91683;91684;91685;91686;91687;91688;91689;91690;91691;91692;91693;91694;91695;91696;91697;91698;91699;91700;91701;91702 110867;110868;110869;110870;110871;110872;110873;110874;110875;110876;110877;110878;110879;110880;110881;110882;110883;110884;110885;110886;110887;110888;110889;110890;110891;110892;110893;110894;110895;110896;110897 110875 31 STNKGTAYTFFTPGNLK Unmodified 1845.9261 0.92611336 2368 Q92841;Q92841-3;Q92841-1;Q92841-2 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 58.023 57.875 4 2.4351E-05 18125 20211116_3442_TMUAki_TMT10x_S_F4 89.866 78.252 10943000 18565000 74122 19042000 18464000 25168000 15246000 18375000 17622000 17056000 17569000 10189000 17325000 981260 19484000 17621000 25109000 15707000 18986000 17822000 16712000 16950000 4 4 1 4 4 4 4 4 4 4 4 8793900 14698000 74122 15240000 15502000 22695000 13266000 13789000 13790000 12988000 13585000 8187900 13716000 808160 15620000 14807000 22460000 13590000 14446000 13999000 12718000 13111000 3 3 1 3 3 3 3 3 3 3 3 2149000 3867100 0 3802100 2961700 2473400 1979800 4585800 3831800 4068400 3983800 2000800 3608200 173090 3863500 2814000 2649200 2116900 4540500 3822500 3994700 3838300 1 1 0 1 1 1 1 1 1 1 1 1973500000 1125000000 848500000 18081 2368 16613 91703;91704;91705;91706 110898;110899;110900;110901 110901 4 STPAAVGAMEDKSAEHK Oxidation (M) 1743.8098 0.80976297 3107 Q9UGI8;Q9UGI8-2 TES Testin yes no 0 0 1 1 By MS/MS 8 0 1 1 43.364 43.539 5 0.0054147 11459 20211116_3436_TMUAki_TMT10x_P_F8 58.671 35.066 766980 1106900 7347.8 1285100 1884600 1671300 1064300 916310 997040 871220 1102300 714190 1033500 86089 1304200 1786800 1661800 1120400 968400 1021000 852740 1060100 1 1 1 1 1 1 1 1 1 1 1 766980 1106900 7347.8 1285100 1884600 1671300 1064300 916310 997040 871220 1102300 714190 1033500 86089 1304200 1786800 1661800 1120400 968400 1021000 852740 1060100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 110710000 110710000 0 18082 3107 16614 91707 110902 110902 3136 1 STPAITLESPDIKYPLR Unmodified 1900.0306 0.030578432 465 P00387;P00387-2;P00387-3 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 0 0 0 1 By MS/MS By MS/MS 7.27 0.75 2 4 5 6 5 60.947 61.262 3;4 4.15E-53 18082 20211116_3447_TMUAki_TMT10x_S_F8 269.02 252.33 51341000 88762000 369490 81658000 64571000 95168000 64889000 59600000 59783000 58799000 63843000 47805000 82798000 4607300 84009000 61933000 95318000 65645000 62368000 61186000 57459000 61461000 11 11 7 11 11 11 11 11 11 11 11 35506000 61190000 329340 56029000 44908000 77328000 48839000 41617000 41699000 39891000 43407000 33061000 57077000 3338800 57841000 43175000 76660000 49113000 44064000 42795000 39031000 41820000 7 7 5 7 7 7 7 7 7 7 7 15836000 27572000 40146 25630000 19664000 17840000 16050000 17983000 18083000 18908000 20436000 14744000 25721000 1268600 26167000 18757000 18658000 16533000 18304000 18391000 18428000 19641000 4 4 2 4 4 4 4 4 4 4 4 12582000000 6537100000 6044900000 18083 465 16615 91708;91709;91710;91711;91712;91713;91714;91715;91716;91717;91718 110903;110904;110905;110906;110907;110908;110909;110910;110911;110912;110913;110914;110915 110914 13 STPDGTEHGEFLALDLGGTNFR Unmodified 2333.0924 0.09240342 1188 P52789 HK2 Hexokinase-2 yes yes 0 0 0 0 By MS/MS By matching 3 0 2 1 1 66.083 65.706 3 3.6077E-14 22542 20211116_3430_TMUAki_TMT10x_P_F3 124.69 113.25 3425100 6046100 0 4655500 4066100 9312400 5440400 6230800 6023500 6103800 5314100 3188600 5636500 231410 4917200 3929300 9130300 5464600 6486800 6077200 5966500 5148300 2 2 0 2 2 2 2 2 2 2 2 3425100 6046100 0 4655500 4066100 9312400 5440400 6230800 6023500 6103800 5314100 3188600 5636500 231410 4917200 3929300 9130300 5464600 6486800 6077200 5966500 5148300 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 787000000 428180000 358830000 18084 1188 16616 91719;91720 110916;110917 110916 2 STPEYFAER Unmodified 1098.4982 0.49818889 548 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 0 By matching By MS/MS 2.5 0.5 1 1 1 1 38.092 37.844 2 0.029566 12173 20211116_3441_TMUAki_TMT10x_S_F3 60.019 45.35 541250 885780 19656 1232200 472230 469310 505690 969780 1123700 737420 1026500 504100 827820 62225 1221200 454830 536410 530330 953790 1112700 729780 993230 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 541250 885780 19656 1232200 472230 469310 505690 969780 1123700 737420 1026500 504100 827820 62225 1221200 454830 536410 530330 953790 1112700 729780 993230 1 1 1 1 1 1 1 1 1 1 1 38401000 24233000 14167000 18085 548 16617 91721;91722 110918 110918 1 STPKEETVNDPEEAGHR Unmodified 1894.8657 0.86569795 103 O00567 NOP56 Nucleolar protein 56 yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 28.856 28.602 4 2.2247E-15 8536 20211116_3441_TMUAki_TMT10x_S_F3 150.28 139.64 145660 246220 0 219700 249250 251560 178160 142880 171630 141950 200730 135600 229650 11386 226480 237070 251870 184230 150730 175920 138670 192740 2 2 0 2 2 2 2 2 2 2 2 87274 141830 0 127580 180000 189200 113310 81144 113190 90846 122340 81244 132290 6540.6 132080 170790 186520 118420 88246 115480 88325 117730 1 1 0 1 1 1 1 1 1 1 1 58382 104400 0 92127 69254 62357 64849 61740 58438 51100 78394 54358 97368 4845.1 94406 66283 65347 65811 62485 60440 50345 75006 1 1 0 1 1 1 1 1 1 1 1 28098000 14876000 13222000 18086 103 16618 91723;91724 110919;110920 110920 2 STPVIVSATTK Unmodified 1102.6234 0.6233894 1501 Q02952;Q02952-3;Q02952-2 AKAP12 A-kinase anchor protein 12 yes no 0 0 0 0 By MS/MS 7 0 2 2 41.921 42.496 2;3 5.1625E-11 12745 20211116_3446_TMUAki_TMT10x_S_F7 168.46 129.44 662140 1154700 0 1169800 677470 568690 738770 790100 825790 673300 972190 616460 1077600 47622 1183300 650640 621400 748850 788650 841480 662400 933300 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 662140 1154700 0 1169800 677470 568690 738770 790100 825790 673300 972190 616460 1077600 47622 1183300 650640 621400 748850 788650 841480 662400 933300 2 2 0 2 2 2 2 2 2 2 2 36281000 0 36281000 18087 1501 16619 91725;91726 110921;110922 110922 2 STPVIVSATTKK Unmodified 1230.7184 0.71835242 1501 Q02952;Q02952-3;Q02952-2 AKAP12 A-kinase anchor protein 12 yes no 0 0 0 1 By MS/MS By MS/MS 1.75 0.433 1 3 2 2 39.68 39.537 3 3.6438E-12 9807 20211116_3440_TMUAki_TMT10x_S_F2 134.21 101.26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18088 1501 16620 91727;91728;91729;91730 110923;110924;110925;110926 110926 4 STPVTVVLPDTK Unmodified 1255.7024 0.702368 1757 Q15029;Q15029-2;Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 55.322 55.411 3 0.00050611 15644 20211116_3434_TMUAki_TMT10x_P_F6 79.492 58.191 3460300 5960000 85965 6949300 3392800 2748400 2597600 5135500 4663300 4309400 4554900 3222500 5565000 366060 6956700 3238400 3112700 2740300 5076300 4649900 4242800 4397300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3460300 5960000 85965 6949300 3392800 2748400 2597600 5135500 4663300 4309400 4554900 3222500 5565000 366060 6956700 3238400 3112700 2740300 5076300 4649900 4242800 4397300 1 1 1 1 1 1 1 1 1 1 1 236790000 0 236790000 18089 1757 16621 91731;91732 110927;110928 110927 2 STQAATQVVLNVPETR Unmodified 1712.9057 0.90571227 335 O75439 PMPCB Mitochondrial-processing peptidase subunit beta yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.632 1 3 1 3 2 48.642 48.81 3 1.5115E-10 13345 20211116_3445_TMUAki_TMT10x_S_F6 122.94 93.93 3474800 6078000 30174 6614300 3440000 3181900 2859900 5080400 5065900 4604900 4994100 3235500 5673400 313000 6658500 3285500 3495900 2999600 5055300 5054600 4516900 4819900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3474800 6078000 30174 6614300 3440000 3181900 2859900 5080400 5065900 4604900 4994100 3235500 5673400 313000 6658500 3285500 3495900 2999600 5055300 5054600 4516900 4819900 2 2 1 2 2 2 2 2 2 2 2 669280000 0 669280000 18090 335 16622 91733;91734;91735;91736;91737 110929;110930;110931;110932;110933 110933 5 STQAPLIIRPDSGNPLDTVLK Unmodified 2234.227 0.22704641 1031 P43490 NAMPT Nicotinamide phosphoribosyltransferase yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 69.519 69.486 3 4.7245E-08 21567 20211116_3447_TMUAki_TMT10x_S_F8 97.776 79.181 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18091 1031 16623 91738;91739 110934;110935 110935 2 STRFEEFLQR Unmodified 1311.6571 0.65714914 1491 Q02218;Q02218-2;Q02218-3 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 6.75 0.433 1 3 2 2 44.832 45.23 3 2.6612E-07 13904 20211116_3446_TMUAki_TMT10x_S_F7 158.56 122.12 4580300 7889500 1026.5 9325000 3497200 3619700 3512400 5363600 5153200 4810200 6182500 4264500 7367200 347220 9326400 3352500 4078600 3612800 5348700 5207200 4720700 5932200 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4580300 7889500 1026.5 9325000 3497200 3619700 3512400 5363600 5153200 4810200 6182500 4264500 7367200 347220 9326400 3352500 4078600 3612800 5348700 5207200 4720700 5932200 3 3 1 3 3 3 3 3 3 3 3 549850000 250910000 298940000 18092 1491 16624 91740;91741;91742;91743 110936;110937;110938;110939 110938 4 STSQGFCFNILCVGETGIGK Unmodified 2174.0136 0.013624514 2965 Q9NVA2;Q9NVA2-2 SEPT11 Septin-11 yes no 0 0 0 0 By MS/MS 5.5 2.5 1 1 2 43.751 43.662 3 1.8207E-05 25182 20211116_3447_TMUAki_TMT10x_S_F8 82.36 67.899 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18093 2965 16625 91744;91745 110940;110941 110941 2 STSSQTVGLASVGTQTIR Unmodified 1791.9327 0.9326553 399 O94964;O94964-2;O94964-3 SOGA1 Protein SOGA1;N-terminal form;C-terminal 80 kDa form yes no 0 0 0 0 By MS/MS 8 0 1 1 45.047 45.202 3 0.0084758 12171 20211116_3436_TMUAki_TMT10x_P_F8 50.232 35.541 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18094 399 16626 91746 110942 110942 1 STTLRVDQSILTGESVSVIK Unmodified 2132.1689 0.16886283 697 P16615;P16615-5;P16615-2;P16615-3;O14983;O14983-3;O14983-2 ATP2A2;ATP2A1 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 yes no 0 0 0 1 By MS/MS 7 0 1 1 63.622 64.294 3 2.4096E-07 21133 20211116_3435_TMUAki_TMT10x_P_F7 90.464 73.779 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18095 697 16627 91747 110943 110943 1 STTPGGTGIKPFLER Unmodified 1559.8308 0.83075641 2911 Q9NQW6;Q9NQW6-2 ANLN Actin-binding protein anillin yes no 0 0 0 1 By MS/MS By matching 8 0 2 1 1 46.856 46.876 3 1.9679E-05 12867 20211116_3436_TMUAki_TMT10x_P_F8 99.238 78.653 2730400 4440300 81099 4830500 5760200 6640500 3769900 4281400 4674300 3765800 4310500 2542900 4144700 344390 4927400 5478000 6600200 3956000 4456700 4702800 3699100 4169400 2 2 2 2 2 2 2 2 2 2 2 2730400 4440300 81099 4830500 5760200 6640500 3769900 4281400 4674300 3765800 4310500 2542900 4144700 344390 4927400 5478000 6600200 3956000 4456700 4702800 3699100 4169400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 170210000 82597000 87613000 18096 2911 16628 91748;91749 110944;110945 110944 2 STTSTIESFAAQEK Unmodified 1498.7151 0.71511753 414 O95232 LUC7L3 Luc7-like protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 53.631 53.637 3 4.0807E-20 16297 20211116_3442_TMUAki_TMT10x_S_F4 178.58 149.28 20150000 36253000 288930 41199000 29319000 33984000 23221000 30852000 29514000 28070000 31506000 18763000 33846000 1986900 41572000 27971000 34995000 24068000 31443000 29821000 27530000 30331000 6 6 4 6 6 6 6 6 6 6 6 9920300 16412000 18676 18930000 20557000 24668000 15220000 14143000 14391000 12503000 15506000 9236200 15323000 907510 19220000 19573000 24540000 15691000 14861000 14716000 12279000 14924000 3 3 1 3 3 3 3 3 3 3 3 10229000 19841000 270250 22268000 8762100 9315300 8001100 16710000 15124000 15568000 16000000 9526600 18523000 1079400 22352000 8398800 10455000 8376200 16582000 15105000 15251000 15408000 3 3 3 3 3 3 3 3 3 3 3 3757300000 2416600000 1340700000 18097 414 16629 91750;91751;91752;91753;91754;91755 110946;110947;110948;110949;110950;110951 110950 6 STTTGHLIYK Unmodified 1119.5924 0.59242362 1416;1520 P68104;Q5VTE0;Q05639 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2 no no 0 0 0 0 By MS/MS By MS/MS 3.89 2.18 2 1 1 1 2 2 5 4 32.988 32.964 3 0.0021494 10689 20211116_3441_TMUAki_TMT10x_S_F3 75.387 44.775 22173000 34711000 329650 35884000 41389000 37501000 23934000 20719000 23661000 21198000 28051000 20647000 32394000 2292400 36549000 39259000 37726000 25181000 21927000 24238000 20683000 26924000 8 8 5 8 8 8 8 8 8 8 8 16245000 24834000 321320 26118000 35060000 32839000 17764000 15672000 18284000 15995000 20023000 15127000 23177000 1864400 26655000 33199000 32654000 18940000 16810000 18640000 15608000 19262000 5 5 4 5 5 5 5 5 5 5 5 5928100 9877200 8330.1 9765600 6329200 4661500 6169400 5047000 5376500 5203200 8028400 5519100 9216100 427950 9894100 6060200 5072300 6241700 5116700 5598500 5075300 7662600 3 3 1 3 3 3 3 3 3 3 3 1967100000 1537600000 429560000 18098 1416;1520 16630 91756;91757;91758;91759;91760;91761;91762;91763;91764 110952;110953;110954;110955;110956;110957;110958;110959;110960 110958 9 STTYSLESPKDPVLPAR Unmodified 1859.9629 0.9628928 2945 Q9NTI5;Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 48.134 48.257 3 0.031577 12729 20211116_3434_TMUAki_TMT10x_P_F6 41.938 20.985 22145000 40483000 1328400 45875000 31447000 43915000 22252000 52490000 61874000 49443000 46211000 20629000 37795000 3204300 46390000 30002000 45051000 24278000 52844000 60656000 48415000 45063000 3 3 3 3 3 3 3 3 3 3 3 7074200 11861000 268310 13993000 18018000 28365000 12360000 15755000 19014000 15400000 15076000 6588800 11076000 989830 14339000 17151000 27727000 13039000 16645000 18913000 15056000 14666000 1 1 1 1 1 1 1 1 1 1 1 15071000 28622000 1060100 31882000 13429000 15550000 9892000 36735000 42859000 34043000 31134000 14040000 26719000 2214500 32050000 12851000 17324000 11239000 36200000 41743000 33359000 30397000 2 2 2 2 2 2 2 2 2 2 2 1242500000 713210000 529300000 18099 2945 16631 91765;91766 110961 110961 1 STVAQLVK Unmodified 844.50182 0.5018177 805 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 43.504 44.052 2 0.002929 13405 20211116_3446_TMUAki_TMT10x_S_F7 103.56 26.664 2450100 3969500 70796 4314100 2236100 1945800 2275900 2816300 2838100 2511700 3684800 2281800 3705200 266110 4341400 2149400 2147900 2323800 2810300 2892800 2465600 3528400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2450100 3969500 70796 4314100 2236100 1945800 2275900 2816300 2838100 2511700 3684800 2281800 3705200 266110 4341400 2149400 2147900 2323800 2810300 2892800 2465600 3528400 1 1 1 1 1 1 1 1 1 1 1 39856000 0 39856000 18100 805 16632 91767;91768 110962;110963 110962 2 STVDAEAVHK Unmodified 1055.5247 0.52473799 1183 P52701;P52701-3;P52701-4 MSH6 DNA mismatch repair protein Msh6 yes no 0 0 0 0 By MS/MS 3 0 1 1 31.419 31.166 3 0.029704 9561 20211116_3441_TMUAki_TMT10x_S_F3 49.5 20.757 242470 414010 5022.6 436300 269760 229860 286010 287640 298460 274040 350350 225800 386400 25166 440440 259370 248200 289650 289130 304930 268210 336370 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 242470 414010 5022.6 436300 269760 229860 286010 287640 298460 274040 350350 225800 386400 25166 440440 259370 248200 289650 289130 304930 268210 336370 1 1 1 1 1 1 1 1 1 1 1 18553000 0 18553000 18101 1183 16633 91769 110964 110964 1 STVLTPMFVETQASQGTLQTR Oxidation (M) 2310.1526 0.15256084 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 0 By MS/MS By MS/MS 6.8 0.4 1 4 3 2 60.746 61.239 3 1.7392E-26 20490 20211116_3446_TMUAki_TMT10x_S_F7 168.58 154.32 9646700 16044000 216490 15458000 11524000 15496000 11856000 15120000 14797000 13245000 13677000 8982900 14968000 937440 15812000 11065000 15775000 12100000 15336000 14885000 13013000 13228000 6 6 2 6 6 6 6 6 6 6 6 4764300 8082200 207030 7812000 5507000 10281000 6516300 7355500 8230200 6719200 6890000 4437200 7540500 549570 8025500 5315100 10255000 6610100 7607200 8250200 6588500 6688000 3 3 1 3 3 3 3 3 3 3 3 4882400 7961500 9468.2 7646400 6016900 5215100 5339500 7764500 6566400 6526300 6786700 4545800 7427800 387880 7786500 5750100 5520000 5489500 7728700 6634300 6425000 6540000 3 3 1 3 3 3 3 3 3 3 3 4432700000 2894700000 1538000000 18102 1433 16634 91770;91771;91772;91773;91774 110965;110966;110967;110968;110969;110970 110970 1944 6 STVLTPMFVETQASQGTLQTR Unmodified 2294.1576 0.15764621 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 68.061 68.175 3 2.8036E-44 20964 20211116_3447_TMUAki_TMT10x_S_F8 199.41 188.36 13813000 24390000 1141400 23578000 19941000 25475000 19164000 21376000 20460000 22003000 21578000 12869000 22756000 2294700 24140000 19170000 25744000 19520000 21959000 20797000 21463000 20781000 5 5 5 5 5 5 5 5 5 5 5 5078800 8499300 216510 8455400 6699400 12650000 6934800 7686800 7304800 8036800 8047900 4730500 7930600 645550 8691800 6442800 12516000 7033400 8076400 7441500 7834700 7740500 2 2 2 2 2 2 2 2 2 2 2 8733800 15891000 924840 15123000 13242000 12826000 12229000 13689000 13155000 13966000 13531000 8138900 14825000 1649100 15448000 12727000 13227000 12486000 13883000 13356000 13628000 13041000 3 3 3 3 3 3 3 3 3 3 3 2787600000 1382100000 1405500000 18103 1433 16634 91775;91776;91777 110971;110972;110973;110974;110975 110975 5 STVRDIDPQNDLTFLR Unmodified 1888.9643 0.96428978 2884 Q9NP97;Q8TF09 DYNLRB1;DYNLRB2 Dynein light chain roadblock-type 1;Dynein light chain roadblock-type 2 yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 58.201 58.362 3 1.4806E-10 16883 20211116_3444_TMUAki_TMT10x_S_F5 128.59 91.034 8406800 14557000 106950 14234000 13081000 15129000 10507000 14416000 12622000 12640000 12148000 7828400 13582000 862130 14557000 12485000 15342000 10858000 14640000 12731000 12418000 11733000 2 2 2 2 2 2 2 2 2 2 2 3828200 7068700 36991 6877500 5939300 9626600 5719700 6085400 6087200 5743200 5647200 3564700 6595100 381420 7070800 5691600 9557800 5824600 6355700 6160900 5623200 5461200 1 1 1 1 1 1 1 1 1 1 1 4578600 7487800 69960 7356600 7141900 5502800 4787400 8331100 6534500 6896900 6500400 4263700 6986500 480700 7486500 6793000 5783800 5033200 8284800 6570100 6795000 6271700 1 1 1 1 1 1 1 1 1 1 1 1305600000 643470000 662170000 18104 2884 16635 91778;91779;91780 110976;110977;110978 110978 3 STVTLSWKPVQK Unmodified 1372.7715 0.77145062 2744 Q9BZZ5-2;Q9BZZ5;Q9BZZ5-6;Q9BZZ5-5;Q9BZZ5-1 API5 Apoptosis inhibitor 5 yes no 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 51.906 51.865 3 7.0652E-09 15560 20211116_3442_TMUAki_TMT10x_S_F4 143.42 125.35 43246000 67657000 694030 79558000 70213000 60549000 52867000 35815000 33992000 36882000 50772000 40272000 63176000 4600300 80037000 66929000 62300000 53948000 37694000 36003000 35977000 48458000 4 4 3 4 4 4 4 4 4 4 4 27496000 41496000 604830 49579000 54099000 49179000 38905000 21793000 21453000 23581000 31402000 25606000 38750000 3215900 50002000 51527000 49510000 39717000 23593000 22941000 22956000 29984000 2 2 2 2 2 2 2 2 2 2 2 15750000 26161000 89203 29978000 16114000 11370000 13962000 14022000 12540000 13301000 19370000 14666000 24425000 1384400 30035000 15401000 12790000 14231000 14101000 13061000 13020000 18474000 2 2 1 2 2 2 2 2 2 2 2 2808900000 1629900000 1179000000 18105 2744 16636 91781;91782;91783 110979;110980;110981;110982 110982 4 STVVPVPYEK Unmodified 1117.6019 0.60192568 1428 P78347;P78347-2;P78347-4;P78347-3;P78347-5 GTF2I General transcription factor II-I yes no 0 0 0 0 By MS/MS 5 0 1 1 49.829 50.02 2 0.0012382 14649 20211116_3433_TMUAki_TMT10x_P_F5 83.647 44.629 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18106 1428 16637 91784 110983 110983 1 STVVQLLER Unmodified 1043.5975 0.597509 550 P08183;P08183-2;P21439;P21439-3;P21439-2 ABCB1;ABCB4 Multidrug resistance protein 1;Multidrug resistance protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 56.491 56.567 2 0.0035119 16515 20211116_3445_TMUAki_TMT10x_S_F6 78.61 38.661 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18107 550 16638 91785;91786 110984;110985 110985 2 STYEQVDLIGKK Unmodified 1379.7296 0.72964538 2918 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 48.573 48.912 3 9.3342E-12 13359 20211116_3445_TMUAki_TMT10x_S_F6 162.48 129.22 20897000 32926000 207830 39011000 42602000 35603000 22872000 28409000 29649000 23459000 31513000 19458000 30746000 2161400 39317000 40361000 36319000 24441000 29099000 29932000 23116000 30341000 6 6 3 6 6 6 6 6 6 6 6 10703000 17023000 207830 19693000 33200000 27602000 14679000 14900000 15946000 12233000 16456000 9966700 15894000 1396100 20019000 31381000 27346000 15897000 15711000 16185000 12057000 15859000 3 3 3 3 3 3 3 3 3 3 3 10194000 15903000 0 19318000 9401600 8001200 8193200 13508000 13703000 11227000 15056000 9491400 14852000 765280 19297000 8979800 8972900 8544400 13388000 13747000 11059000 14482000 3 3 0 3 3 3 3 3 3 3 3 1547800000 930820000 616930000 18108 2918 16639 91787;91788;91789;91790 110986;110987;110988;110989;110990;110991 110989 6 SVAADFIQQGIR Unmodified 1303.6884 0.68844927 2680 Q9BUT1;Q9BUT1-3 BDH2 3-hydroxybutyrate dehydrogenase type 2 yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 56.948 57.391 2 6.8292E-15 18850 20211116_3446_TMUAki_TMT10x_S_F7 181.87 143.64 22603000 37230000 183630 41028000 36881000 43058000 29295000 26447000 24292000 24399000 31009000 21047000 34754000 2145500 41618000 35178000 43366000 29957000 27667000 25170000 23913000 29705000 4 4 3 4 4 4 4 4 4 4 4 17271000 27554000 183630 30806000 30484000 37297000 24033000 18370000 17430000 17480000 22298000 16082000 25723000 1788000 31295000 29078000 37170000 24511000 19606000 18194000 17108000 21360000 3 3 3 3 3 3 3 3 3 3 3 5332900 9675800 0 10222000 6397500 5760900 5261700 8077400 6862300 6918800 8710800 4964700 9030600 357410 10323000 6099200 6196000 5446100 8061000 6976800 6805000 8345800 1 1 0 1 1 1 1 1 1 1 1 2266100000 1675600000 590450000 18109 2680 16640 91791;91792;91793 110992;110993;110994;110995 110995 4 SVADGQESTPPTPAPTSGIVGALMEVMQK Unmodified 2897.4151 0.41505947 83 O00401 WASL Neural Wiskott-Aldrich syndrome protein yes yes 0 0 0 0 By MS/MS 6 0 1 1 81.468 81.461 3 1.8561E-09 26366 20211116_3434_TMUAki_TMT10x_P_F6 90.388 77.711 405910 638010 7296.4 698140 405370 506800 434730 215330 198730 310310 436640 378000 595560 40445 705110 389870 521550 432130 236480 220950 299150 413850 1 1 1 1 1 1 1 1 1 1 1 405910 638010 7296.4 698140 405370 506800 434730 215330 198730 310310 436640 378000 595560 40445 705110 389870 521550 432130 236480 220950 299150 413850 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 65043000 65043000 0 18110 83 16641 91794 110996 110996 1 SVAFPPFPSGR Unmodified 1160.5978 0.59784335 3051 Q9P0M6 H2AFY2 Core histone macro-H2A.2 yes yes 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 4 2 2 4 58.761 58.486 2 2.6905E-06 17797 20211116_3440_TMUAki_TMT10x_S_F2 125.97 93.614 33874000 53755000 363630 57617000 43455000 50891000 40116000 42776000 37701000 40338000 45225000 31542000 50173000 3227300 58406000 41601000 52077000 40791000 43828000 38727000 39497000 43394000 8 8 6 8 8 8 8 8 8 8 8 17307000 26156000 84507 28847000 24337000 34407000 23556000 19354000 18682000 18618000 22700000 16115000 24417000 1557900 29322000 23318000 34371000 23784000 20416000 19361000 18213000 21773000 4 4 2 4 4 4 4 4 4 4 4 16567000 27598000 279120 28770000 19118000 16483000 16560000 23422000 19019000 21720000 22525000 15427000 25757000 1669300 29084000 18283000 17706000 17007000 23413000 19365000 21283000 21621000 4 4 4 4 4 4 4 4 4 4 4 1789200000 766590000 1022600000 18111 3051 16642 91795;91796;91797;91798;91799;91800 110997;110998;110999;111000;111001;111002;111003;111004;111005 111001 9 SVAGGEIRGDTGGEDTAAPGR Acetyl (Protein N-term) 2013.9352 0.9351745 2822 Q9H773 DCTPP1 dCTP pyrophosphatase 1 yes yes 1 0 0 1 By MS/MS By MS/MS 1 0 4 2 2 34.001 33.995 2;3 1.1349E-162 7546 20211116_3428_TMUAki_TMT10x_P_F1 217.57 181.92 270980 377960 20361 573250 502920 386980 276640 300540 349550 282060 375070 252460 353410 34416 568230 477770 403770 294690 309380 353320 276240 361030 4 4 1 4 4 4 4 4 4 4 4 151110 216190 20361 311650 400040 275810 161160 163140 165570 145010 154470 140850 202080 34416 310650 378800 280660 176100 171020 167850 142370 149360 2 2 1 2 2 2 2 2 2 2 2 119860 161770 0 261600 102880 111170 115470 137400 183980 137060 220600 111600 151330 0 257570 98961 123120 118590 138360 185470 133870 211670 2 2 0 2 2 2 2 2 2 2 2 745210000 423050000 322150000 18112 2822 16643 91801;91802;91803;91804 111006;111007;111008;111009 111006 4 SVAGGFVYTYK Unmodified 1190.5972 0.59717465 1798 Q15393;Q15393-3 SF3B3 Splicing factor 3B subunit 3 yes no 0 0 0 0 By MS/MS By MS/MS 3.82 3.19 4 3 4 5 6 55.955 55.853 2;3 1.1777E-14 16372 20211116_3428_TMUAki_TMT10x_P_F1 193.52 140.2 39232000 66080000 105650 67259000 56279000 67772000 45928000 54388000 55008000 49018000 52452000 36527000 61664000 3310800 68539000 53691000 68709000 47409000 55813000 55473000 48095000 50678000 10 10 4 10 10 10 10 10 10 10 10 22219000 36431000 26971 35748000 38764000 51670000 30389000 29642000 30298000 26952000 28437000 20686000 33992000 1872100 36756000 36945000 51161000 31260000 31169000 30761000 26434000 27490000 5 5 2 5 5 5 5 5 5 5 5 17013000 29649000 78678 31510000 17515000 16102000 15539000 24746000 24710000 22066000 24015000 15841000 27673000 1438800 31784000 16746000 17548000 16149000 24644000 24712000 21661000 23188000 5 5 2 5 5 5 5 5 5 5 5 4453200000 2500400000 1952800000 18113 1798 16644 91805;91806;91807;91808;91809;91810;91811;91812;91813;91814;91815 111010;111011;111012;111013;111014;111015;111016;111017;111018;111019 111010 10 SVALYDCR Unmodified 982.45422 0.45421558 1653 Q13610 PWP1 Periodic tryptophan protein 1 homolog yes yes 0 0 0 0 By MS/MS 4 0 1 1 34.862 34.948 2 0.029725 8814 20211116_3442_TMUAki_TMT10x_S_F4 66.457 53.925 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18114 1653 16645 91816 111020 111020 1 SVANVIQQAGCPVPEYIK Unmodified 1972.0088 0.0087971324 3245 Q9Y2R4 DDX52 Probable ATP-dependent RNA helicase DDX52 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 67.44 67.672 3 2.2687E-10 21299 20211116_3436_TMUAki_TMT10x_P_F8 113.47 101.31 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18115 3245 16646 91817;91818 111021;111022 111021 2 SVAVYGGGSMWEQAK Oxidation (M) 1584.7242 0.72424243 2125 Q86XP3;Q86XP3-2 DDX42 ATP-dependent RNA helicase DDX42 yes no 0 0 1 0 By MS/MS 6 0 1 1 50.362 50.463 3 3.3208E-05 13653 20211116_3434_TMUAki_TMT10x_P_F6 94.551 80.889 3483300 5425900 83078 6728300 8009700 8031000 4965400 4052500 4450400 3991800 4701600 3243900 5067800 429610 6791500 7608500 8011600 5179800 4319200 4559000 3901100 4527700 2 2 2 2 2 2 2 2 2 2 2 3483300 5425900 83078 6728300 8009700 8031000 4965400 4052500 4450400 3991800 4701600 3243900 5067800 429610 6791500 7608500 8011600 5179800 4319200 4559000 3901100 4527700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 113670000 113670000 0 18116 2125 16647 91819 111023;111024 111024 2605 2 SVCLIGDKEQR Unmodified 1303.6554 0.65543458 260 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 0 0 0 1 By MS/MS 6 0 1 1 36.826 36.814 3 0.0022122 8211 20211116_3434_TMUAki_TMT10x_P_F6 75.102 51.115 678120 990520 0 1033900 1418100 1226300 791060 620070 640060 604610 834560 631370 924420 63251 1054600 1343800 1223800 830520 660580 664660 591130 799050 2 2 0 2 2 2 2 2 2 2 2 678120 990520 0 1033900 1418100 1226300 791060 620070 640060 604610 834560 631370 924420 63251 1054600 1343800 1223800 830520 660580 664660 591130 799050 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17094000 17094000 0 18117 260 16648 91820 111025;111026 111026 2 SVCTEAGMFAIR Oxidation (M) 1356.6166 0.61660624 945 P35998;P35998-2 PSMC2 26S protease regulatory subunit 7 yes no 0 0 1 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 47.104 47.257 2 0.00068461 13551 20211116_3433_TMUAki_TMT10x_P_F5 86.205 74.248 3123600 5095800 99828 6236200 4751300 6055000 3649500 6097800 6483800 5214700 5484700 2909200 4759200 374800 6278700 4534100 6180600 3847200 6171200 6436700 5129300 5321800 2 2 2 2 2 2 2 2 2 2 2 1669400 2515100 66619 3096600 3431300 4836900 2588900 3360600 3487400 2873700 2784500 1554800 2349100 225170 3144000 3272900 4787000 2697900 3476700 3483500 2826600 2707800 1 1 1 1 1 1 1 1 1 1 1 1454300 2580700 33209 3139600 1320000 1218100 1060600 2737200 2996400 2341000 2700200 1354300 2410100 149640 3134700 1261200 1393600 1149300 2694500 2953100 2302700 2614000 1 1 1 1 1 1 1 1 1 1 1 757610000 576910000 180700000 18118 945 16649 91821;91822;91823 111027 111027 1205 1 SVDEALR Unmodified 788.40283 0.40283194 899 P32119 PRDX2 Peroxiredoxin-2 yes yes 0 0 0 0 By MS/MS By MS/MS 2.4 1.5 2 1 1 1 2 3 32.097 32.034 2 0.001377 6974 20211116_3428_TMUAki_TMT10x_P_F1 138.24 63.804 3939000 6672500 2879.7 5811400 5519400 5665400 4871600 3042400 3769500 3398700 5001200 3667500 6222900 329130 5987200 5274700 5721600 4941200 3236300 3926700 3304600 4786400 5 5 2 5 5 5 5 5 5 5 5 2165600 3640000 0 3162500 3283400 3862200 2504100 1625800 2113200 1894700 2715200 2016300 3394700 185800 3270500 3128000 3841100 2568700 1773900 2188300 1839400 2600600 2 2 0 2 2 2 2 2 2 2 2 1773500 3032500 2879.7 2648900 2236000 1803200 2367400 1416600 1656300 1504000 2286000 1651200 2828200 143340 2716800 2146600 1880500 2372500 1462400 1738400 1465200 2185800 3 3 2 3 3 3 3 3 3 3 3 213390000 136970000 76418000 18119 899 16650 91824;91825;91826;91827;91828 111028;111029;111030;111031;111032 111028 5 SVDETLR Unmodified 818.4134 0.41339662 1533;1605 Q06830;Q13162 PRDX1;PRDX4 Peroxiredoxin-1;Peroxiredoxin-4 no no 0 0 0 0 By MS/MS By MS/MS 2.67 1.49 2 1 1 1 1 4 2 31.661 31.615 2 0.00037252 8142 20211116_3429_TMUAki_TMT10x_P_F2 170.73 79.74 8376900 13451000 16998 11564000 11455000 10955000 10812000 6477700 6959400 6546100 9997700 7798700 12544000 608700 11922000 10959000 11097000 10882000 6814100 7356400 6390500 9550400 6 6 3 6 6 6 6 6 6 6 6 3112600 5082700 2879.5 4531000 4906000 5567800 3562400 2530500 2613100 2665900 3809500 2897700 4740600 222160 4676900 4666400 5539900 3654400 2730200 2742400 2598100 3637900 3 3 2 3 3 3 3 3 3 3 3 5264200 8368500 14119 7033200 6549100 5386700 7249700 3947300 4346300 3880200 6188200 4901000 7803700 386550 7244700 6292800 5556900 7227100 4083900 4614000 3792400 5912500 3 3 1 3 3 3 3 3 3 3 3 510450000 260300000 250150000 18120 1533;1605 16651 91829;91830;91831;91832;91833;91834 111033;111034;111035;111036;111037;111038;111039 111034 7 SVDETTQAMAFDGIIFQGQSLK Oxidation (M) 2401.1471 0.14714111 812 P26368;P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 0 0 1 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 77.6 77.618 3 1.4005E-21 25956 20211116_3433_TMUAki_TMT10x_P_F5 160.3 140.75 32976000 57023000 602800 46471000 42006000 60371000 44485000 48372000 43999000 47323000 46398000 30707000 53169000 3210000 48361000 40362000 60375000 44978000 49756000 44868000 46262000 44684000 11 11 8 11 11 11 11 11 11 11 11 17469000 29085000 391690 23831000 18177000 38757000 21877000 24426000 22596000 23829000 23024000 16268000 27120000 1737700 24905000 17540000 38240000 22019000 25540000 22971000 23297000 22197000 6 6 5 6 6 6 6 6 6 6 6 15507000 27938000 211120 22640000 23829000 21614000 22608000 23946000 21403000 23495000 23374000 14439000 26049000 1472300 23456000 22822000 22135000 22959000 24216000 21896000 22965000 22487000 5 5 3 5 5 5 5 5 5 5 5 9800300000 4461800000 5338400000 18121 812 16652 91835;91836;91837;91838;91839;91840 111040;111041;111042;111043;111044;111045;111046;111047;111048;111049;111050 111040 965 11 SVDETTQAMAFDGIIFQGQSLK Unmodified 2385.1522 0.15222649 812 P26368;P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 0 0 0 0 By MS/MS By MS/MS 6.4 1.02 1 2 1 1 3 2 78.913 78.922 3 1.133E-19 25301 20211116_3434_TMUAki_TMT10x_P_F6 148.38 132.96 19720000 32863000 97149 29717000 25062000 25402000 25226000 16553000 15689000 18174000 23629000 18360000 30653000 1561600 30474000 24025000 25945000 25284000 17325000 16660000 17683000 22548000 7 7 3 7 7 7 7 7 7 7 7 6835600 10624000 97149 9984300 6972400 11426000 8179600 5635900 5206700 5523000 7396200 6365300 9911400 659170 10252000 6721700 11421000 8141800 6019000 5504700 5398700 7067100 3 3 3 3 3 3 3 3 3 3 3 12884000 22239000 0 19733000 18089000 13976000 17047000 10917000 10482000 12651000 16232000 11994000 20742000 902430 20222000 17303000 14524000 17143000 11306000 11155000 12285000 15481000 4 4 0 4 4 4 4 4 4 4 4 4587700000 1820400000 2767300000 18122 812 16652 91841;91842;91843;91844;91845 111051;111052;111053;111054;111055;111056;111057;111058 111053 8 SVDFHFR Unmodified 906.4348 0.43480077 3175 Q9ULW0;Q9ULW0-2 TPX2 Targeting protein for Xklp2 yes no 0 0 0 0 By MS/MS 6 0 1 1 39.036 39.199 3 0.0023238 9458 20211116_3445_TMUAki_TMT10x_S_F6 104.45 90.776 125240 201730 241.89 218940 126150 124440 127510 142410 153840 146520 169470 116610 188300 10621 220730 121010 133000 130090 144010 155910 142930 163000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 125240 201730 241.89 218940 126150 124440 127510 142410 153840 146520 169470 116610 188300 10621 220730 121010 133000 130090 144010 155910 142930 163000 1 1 1 1 1 1 1 1 1 1 1 31225000 0 31225000 18123 3175 16653 91846 111059 111059 1 SVDGPIRLPIVDK Unmodified 1407.8086 0.80856441 681 P15170-3;P15170-2;P15170 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 0 0 0 1 By MS/MS 7 0 1 1 58.186 58.709 3 0.0021219 19367 20211116_3446_TMUAki_TMT10x_S_F7 68.978 46.83 13942000 23734000 0 26197000 11869000 11494000 11565000 15012000 15472000 15183000 17433000 12980000 22155000 1020900 26332000 11366000 12695000 11868000 15090000 15639000 14821000 16757000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13942000 23734000 0 26197000 11869000 11494000 11565000 15012000 15472000 15183000 17433000 12980000 22155000 1020900 26332000 11366000 12695000 11868000 15090000 15639000 14821000 16757000 1 1 0 1 1 1 1 1 1 1 1 1592700000 0 1592700000 18124 681 16654 91847 111060 111060 1 SVDPDSPAEASGLR Unmodified 1399.6579 0.657937 129 O14745;O14745-2 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 yes no 0 0 0 0 By MS/MS 2 0 1 1 36.881 36.98 2 6.8195E-24 8977 20211116_3440_TMUAki_TMT10x_S_F2 196.78 169.65 111770 179990 3656.1 296760 106730 84429 94226 137980 178160 93565 184080 104100 168390 12603 291320 102240 100310 98829 136260 177780 93210 177390 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 111770 179990 3656.1 296760 106730 84429 94226 137980 178160 93565 184080 104100 168390 12603 291320 102240 100310 98829 136260 177780 93210 177390 1 1 1 1 1 1 1 1 1 1 1 10888000 0 10888000 18125 129 16655 91848 111061 111061 1 SVDVILDDDLVDK Unmodified 1444.7297 0.72970496 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 0 By MS/MS By MS/MS 1.62 0.696 4 3 1 4 4 73.395 73.279 2;3 1.9877E-29 25073 20211116_3429_TMUAki_TMT10x_P_F2 238.92 191.66 34405000 55090000 703290 57302000 35892000 46355000 37511000 27622000 29129000 31523000 39904000 32038000 51413000 3319500 58137000 34485000 47477000 37705000 29146000 30383000 30626000 38161000 8 8 5 8 8 8 8 8 8 8 8 20118000 31391000 636280 33204000 19989000 33341000 22034000 16305000 17287000 18311000 23101000 18736000 29298000 2241700 33748000 19255000 33575000 22096000 17498000 18001000 17801000 22104000 4 4 3 4 4 4 4 4 4 4 4 14287000 23699000 67002 24097000 15903000 13013000 15477000 11317000 11842000 13212000 16804000 13302000 22115000 1077800 24389000 15230000 13903000 15609000 11649000 12382000 12825000 16056000 4 4 2 4 4 4 4 4 4 4 4 5525100000 3405400000 2119800000 18126 799 16656 91849;91850;91851;91852;91853;91854;91855;91856 111062;111063;111064;111065;111066;111067;111068;111069 111065 8 SVEAAAELSAK Unmodified 1074.5557 0.55570376 750 P20962 PTMS Parathymosin yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 1.64 2 4 4 4 4 2 1 10 11 44.824 44.823 2;3 5.4688E-30 11407 20211116_3444_TMUAki_TMT10x_S_F5 270.06 198.37 141020000 217620000 512640 222050000 178010000 209210000 151990000 137550000 143210000 129820000 170440000 131300000 203080000 11598000 226020000 169990000 212310000 155260000 143240000 147050000 127110000 163570000 36 36 18 36 36 36 36 36 36 36 36 92901000 139640000 414250 142780000 122440000 165280000 97928000 89869000 93602000 85049000 110790000 86499000 130310000 7983200 145770000 116780000 165290000 100480000 95034000 96023000 83262000 106340000 21 21 13 21 21 21 21 21 21 21 21 48116000 77980000 98394 79269000 55573000 43938000 54062000 47683000 49613000 44775000 59646000 44797000 72769000 3614800 80248000 53216000 47024000 54779000 48205000 51023000 43850000 57227000 15 15 5 15 15 15 15 15 15 15 15 19025000000 10305000000 8719900000 18127 750 16657 91857;91858;91859;91860;91861;91862;91863;91864;91865;91866;91867;91868;91869;91870;91871;91872;91873;91874;91875;91876;91877 111070;111071;111072;111073;111074;111075;111076;111077;111078;111079;111080;111081;111082;111083;111084;111085;111086;111087;111088;111089;111090;111091;111092;111093;111094;111095;111096;111097;111098;111099;111100;111101;111102;111103;111104;111105;111106 111102 37 SVEELLEAELLK Unmodified 1371.7497 0.74971212 2107 Q86UP2;Q86UP2-3;Q86UP2-4;Q86UP2-2 KTN1 Kinectin yes no 0 0 0 0 By MS/MS By MS/MS 1 0 4 2 2 80.019 80.001 2;3 8.8699E-12 26293 20211116_3428_TMUAki_TMT10x_P_F1 170.52 130.09 25137000 38988000 280480 38600000 25903000 35815000 28261000 19535000 20261000 22034000 29048000 23406000 36378000 2131500 39364000 24899000 36292000 28295000 20758000 21274000 21417000 27749000 5 5 3 5 5 5 5 5 5 5 5 16548000 25140000 94745 24598000 14665000 26305000 16820000 12212000 13230000 14208000 18879000 15407000 23456000 1209200 25158000 14106000 26376000 16838000 13187000 13817000 13794000 18037000 3 3 1 3 3 3 3 3 3 3 3 8589200 13848000 185730 14002000 11238000 9509800 11440000 7322700 7030400 7825800 10169000 7998700 12922000 922300 14206000 10792000 9915800 11457000 7570700 7456600 7622400 9712200 2 2 2 2 2 2 2 2 2 2 2 2397900000 1139300000 1258700000 18128 2107 16658 91878;91879;91880;91881 111107;111108;111109;111110;111111 111107 5 SVEGLQEGSVLR Unmodified 1272.6674 0.66737948 312 O75153 CLUH Clustered mitochondria protein homolog yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 45.159 44.998 2 6.2679E-24 13937 20211116_3430_TMUAki_TMT10x_P_F3 243.91 204.95 1563600 2401600 0 2826000 2713900 2295200 1562500 1718000 1947400 1486600 2110100 1455800 2242500 138440 2845100 2572800 2358000 1657100 1768900 1970100 1461400 2030500 2 2 0 2 2 2 2 2 2 2 2 829810 1200700 0 1402900 2161800 1818500 1074000 855270 972100 686250 1048400 772610 1121100 83416 1423200 2045200 1805300 1143100 913140 996110 677190 1009000 1 1 0 1 1 1 1 1 1 1 1 733750 1200900 0 1423100 552150 476670 488570 862690 975350 800350 1061700 683170 1121400 55025 1421900 527620 552650 513970 855780 974010 784230 1021500 1 1 0 1 1 1 1 1 1 1 1 181670000 114890000 66782000 18129 312 16659 91882;91883 111112;111113 111112 2 SVEGRPMFVSPCVDK Oxidation (M) 1722.8069 0.8069262 1753 Q15020;Q15020-4 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 0 0 1 1 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 42.136 42.232 3 0.001679 10536 20211116_3445_TMUAki_TMT10x_S_F6 63.682 40.803 4208900 6664700 3940.2 8368100 9123300 9188000 5208000 7922000 8746900 6555500 6701700 3918700 6225300 381530 8428800 8647100 9281100 5597000 8077500 8671000 6458700 6528200 4 4 1 4 4 4 4 4 4 4 4 2628500 4214100 3940.2 5267500 7930500 8094300 4099400 5204000 5522200 4217700 4348500 2447300 3936100 280820 5341600 7507100 8006700 4402500 5407400 5514000 4159900 4231200 2 2 1 2 2 2 2 2 2 2 2 1580400 2450600 0 3100700 1192800 1093700 1108700 2717900 3224700 2337800 2353200 1471400 2289100 100710 3087300 1140000 1274500 1194500 2670000 3157100 2298900 2297000 2 2 0 2 2 2 2 2 2 2 2 416150000 350270000 65882000 18130 1753 16660 91884;91885;91886 111114;111115;111116;111117 111116 2367 4 SVELEEALPVTTAEGMAK Acetyl (Protein N-term);Oxidation (M) 1931.9398 0.93977409 2336 Q92522 H1FX Histone H1x yes yes 1 0 1 0 By MS/MS By MS/MS 1.5 0.5 3 3 3 3 76.087 76.041 2;3 5.5422E-12 24562 20211116_3428_TMUAki_TMT10x_P_F1 50.563 37.986 16629000 30383000 338410 26242000 21559000 33120000 22028000 29926000 28262000 29768000 26779000 15485000 28335000 1677100 27167000 20698000 33244000 22512000 30583000 28426000 29080000 25879000 9 9 6 9 9 9 9 9 9 9 9 6530000 12007000 205700 10341000 7329300 18339000 8666900 12284000 11942000 12613000 10452000 6081200 11197000 687340 10787000 7070000 18053000 8822600 12805000 11953000 12305000 10129000 3 3 1 3 3 3 3 3 3 3 3 10099000 18376000 132710 15901000 14230000 14781000 13361000 17642000 16319000 17156000 16327000 9403500 17138000 989790 16380000 13628000 15191000 13690000 17779000 16473000 16775000 15750000 6 6 5 6 6 6 6 6 6 6 6 8171300000 5258200000 2913100000 18131 2336 16661 91887;91888;91889;91890;91891;91892 111118;111119;111120;111121;111122;111123;111124;111125;111126 111118 2686 9 SVELEEALPVTTAEGMAK Acetyl (Protein N-term) 1915.9449 0.94485947 2336 Q92522 H1FX Histone H1x yes yes 1 0 0 0 By MS/MS By MS/MS 1.5 0.764 4 1 1 2 4 79.104 79.072 2;3 1.895E-23 27842 20211116_3439_TMUAki_TMT10x_S_F1 89.43 78.279 14158000 24170000 351340 23330000 17288000 18630000 19043000 11326000 10853000 12558000 18097000 13185000 22550000 1545100 23789000 16642000 19105000 18971000 11921000 11657000 12214000 17233000 5 5 5 5 5 5 5 5 5 5 5 5230800 8295600 119350 7736300 5090100 8996300 6437800 3748500 3813300 4178200 6134200 4871300 7738600 542930 7950600 4921700 8969200 6378400 4088900 4076600 4062900 5845600 2 2 2 2 2 2 2 2 2 2 2 8927600 15874000 231990 15593000 12198000 9633900 12605000 7577600 7040100 8379600 11962000 8314200 14811000 1002200 15838000 11721000 10136000 12592000 7832100 7580300 8150900 11387000 3 3 3 3 3 3 3 3 3 3 3 3702700000 1819000000 1883700000 18132 2336 16661 91893;91894;91895;91896;91897;91898 111127;111128;111129;111130;111131;111132 111130 6 SVELEEALPVTTAEGMAK Oxidation (M) 1889.9292 0.92920941 2336 Q92522 H1FX Histone H1x yes yes 0 0 1 0 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 62.448 62.185 3 0.00018525 21079 20211116_3430_TMUAki_TMT10x_P_F3 67.994 58.74 10522000 18010000 22343 17177000 13256000 21320000 12760000 17550000 16389000 15616000 15169000 9796500 16802000 802600 17644000 12691000 21380000 13081000 17976000 16471000 15331000 14671000 5 5 1 5 5 5 5 5 5 5 5 6672600 11396000 22343 10950000 8658900 16763000 8838500 11109000 10243000 10051000 9522200 6212600 10632000 544140 11289000 8304700 16591000 8999400 11548000 10334000 9859800 9208100 3 3 1 3 3 3 3 3 3 3 3 3849700 6613800 0 6227300 4596800 4557600 3921400 6441700 6145900 5564700 5646900 3583900 6170000 258460 6355200 4386100 4788300 4081800 6428200 6137300 5470900 5462800 2 2 0 2 2 2 2 2 2 2 2 1251000000 886600000 364440000 18133 2336 16661 91899;91900;91901 111133;111134;111135;111136;111137 111135 2686 5 SVELEEALPVTTAEGMAK Unmodified 1873.9343 0.93429479 2336 Q92522 H1FX Histone H1x yes yes 0 0 0 0 By MS/MS 3 0 1 1 70.194 69.753 3 0.00010208 25218 20211116_3441_TMUAki_TMT10x_S_F3 74.993 63.016 2603600 4324500 24321 4366800 3054600 2831900 2641200 2803000 2518600 2691100 3403600 2424400 4035400 244840 4428900 2919900 2978900 2696900 2848000 2599000 2632900 3255900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2603600 4324500 24321 4366800 3054600 2831900 2641200 2803000 2518600 2691100 3403600 2424400 4035400 244840 4428900 2919900 2978900 2696900 2848000 2599000 2632900 3255900 1 1 1 1 1 1 1 1 1 1 1 356720000 0 356720000 18134 2336 16661 91902 111138 111138 1 SVEMHHEALSEALPGDNVGFNVK Oxidation (M) 2495.1751 0.17508719 1416;1520 P68104;Q05639 EEF1A1;EEF1A2 Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 no no 0 0 1 0 By MS/MS By MS/MS 5 0.816 1 1 1 1 2 50.141 50.307 4 3.8387E-05 14505 20211116_3431_TMUAki_TMT10x_P_F4 70.452 60.794 4955400 8475000 83547 9433400 5100400 6714700 4112600 8151500 8358200 7459000 7447600 4614600 7911600 490730 9515200 4870700 7040400 4354700 8194600 8284900 7313300 7212700 3 3 3 3 3 3 3 3 3 3 3 1383800 1824000 18756 2199400 2206400 3166200 1634200 1917900 1685600 1673700 1343700 1288600 1703400 143720 2231700 2102400 3137800 1689200 2005600 1700400 1644700 1306800 1 1 1 1 1 1 1 1 1 1 1 3571600 6651000 64792 7233900 2894000 3548500 2478400 6233600 6672600 5785200 6104000 3326000 6208200 347010 7283500 2768300 3902600 2665500 6189000 6584500 5668600 5905900 2 2 2 2 2 2 2 2 2 2 2 1007600000 371430000 636170000 18135 1416;1520 16662 91903;91904;91905 111139;111140;111141 111139 1904 3 SVENLATATTTLTSLAQLLGK Unmodified 2131.1736 0.17361385 2548 Q96S52;Q96S52-2 PIGS GPI transamidase component PIG-S yes no 0 0 0 0 By MS/MS By MS/MS 4.62 0.696 4 3 1 3 5 82.394 82.398 3;4 1.5598E-19 28041 20211116_3442_TMUAki_TMT10x_S_F4 152.06 129.91 22388000 36237000 152780 36713000 22704000 33338000 29445000 17889000 18832000 21535000 28687000 20844000 33815000 1223400 37369000 21924000 33824000 29187000 19077000 19972000 20882000 27368000 11 11 7 11 11 11 11 11 11 11 11 13144000 21390000 112110 21252000 12447000 21185000 15122000 10715000 11378000 12421000 16532000 12236000 19959000 829360 21690000 11986000 21351000 15083000 11473000 11922000 12061000 15788000 6 6 4 6 6 6 6 6 6 6 6 9244400 14847000 40671 15461000 10257000 12153000 14323000 7174300 7453000 9113700 12154000 8607600 13856000 394070 15679000 9938700 12473000 14103000 7603700 8049700 8821000 11579000 5 5 3 5 5 5 5 5 5 5 5 4507700000 1522700000 2985000000 18136 2548 16663 91906;91907;91908;91909;91910;91911;91912;91913 111142;111143;111144;111145;111146;111147;111148;111149;111150;111151;111152 111148 11 SVFALTNGIYPHK Unmodified 1445.7667 0.76669959 1499 Q02878 RPL6 60S ribosomal protein L6 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 1.78 2 3 4 4 1 1 7 8 61.131 60.976 3;4 3.8565E-10 20042 20211116_3429_TMUAki_TMT10x_P_F2 139.19 118.24 66447000 120920000 1414200 120660000 87129000 118700000 81503000 83851000 86502000 82233000 84387000 61878000 112830000 7037500 123080000 83482000 120260000 83121000 86964000 87707000 80380000 81471000 16 16 15 16 16 16 16 16 16 16 16 32015000 59200000 737710 58453000 51189000 83420000 46295000 40912000 43616000 40141000 36856000 29814000 55237000 3531300 60058000 48999000 82487000 47132000 43719000 44249000 39236000 35763000 7 7 6 7 7 7 7 7 7 7 7 34432000 61719000 676460 62207000 35939000 35283000 35208000 42938000 42886000 42092000 47531000 32064000 57593000 3506200 63024000 34483000 37777000 35989000 43245000 43458000 41144000 45708000 9 9 9 9 9 9 9 9 9 9 9 22892000000 14179000000 8713000000 18137 1499 16664 91914;91915;91916;91917;91918;91919;91920;91921;91922;91923;91924;91925;91926;91927;91928 111153;111154;111155;111156;111157;111158;111159;111160;111161;111162;111163;111164;111165;111166;111167;111168;111169 111154 17 SVFDIPIFTEEFLNHSK Unmodified 2022.0098 0.0098429899 2879 Q9NP66 HMG20A High mobility group protein 20A yes yes 0 0 0 0 By MS/MS 7 0 1 1 80.242 80.282 3 5.2994E-05 28388 20211116_3446_TMUAki_TMT10x_S_F7 81.317 65.682 1084700 1788400 43184 1443500 1296600 1642100 1392100 1236500 1142200 1451300 1465400 1010300 1667500 133140 1499900 1248300 1651500 1399300 1284100 1184400 1408600 1403600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1084700 1788400 43184 1443500 1296600 1642100 1392100 1236500 1142200 1451300 1465400 1010300 1667500 133140 1499900 1248300 1651500 1399300 1284100 1184400 1408600 1403600 1 1 1 1 1 1 1 1 1 1 1 607340000 0 607340000 18138 2879 16665 91929 111170 111170 1 SVFDVLDGEEMRR Oxidation (M) 1567.7301 0.73005609 2187 Q8N1G2 CMTR1 Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 yes yes 0 0 1 1 By MS/MS 3.5 0.5 1 1 2 57.052 56.827 3 0.013144 19912 20211116_3441_TMUAki_TMT10x_S_F3 54.524 13.298 1779900 2938800 16578 2701500 1541300 1663100 1490500 2449100 2142100 2219800 2382600 1657400 2741400 159670 2757200 1477600 1775900 1534700 2443500 2159200 2177400 2290900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1779900 2938800 16578 2701500 1541300 1663100 1490500 2449100 2142100 2219800 2382600 1657400 2741400 159670 2757200 1477600 1775900 1534700 2443500 2159200 2177400 2290900 1 1 1 1 1 1 1 1 1 1 1 422750000 0 422750000 18139 2187 16666 91930;91931 111171 111171 2623 1 SVFEAFGK Unmodified 883.44397 0.44396847 3124 Q9UHX1-6;Q9UHX1-5;Q9UHX1-4;Q9UHX1-2;Q9UHX1;Q9UHX1-3 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 61.681 62.03 2 0.00041033 18476 20211116_3447_TMUAki_TMT10x_S_F8 141.47 55.617 50488000 79302000 235500 96062000 69540000 71253000 49755000 52412000 56597000 54366000 64558000 47011000 74060000 4672100 96444000 66195000 73695000 51715000 54299000 57561000 53016000 62031000 4 4 4 4 4 4 4 4 4 4 4 25099000 39017000 163710 45852000 47012000 51354000 28581000 25027000 28565000 26509000 31458000 23371000 36432000 2540400 46376000 44624000 51385000 29955000 26819000 29164000 25829000 30257000 2 2 2 2 2 2 2 2 2 2 2 25389000 40285000 71792 50211000 22528000 19899000 21173000 27385000 28032000 27857000 33101000 23640000 37627000 2131800 50069000 21572000 22310000 21760000 27480000 28397000 27187000 31774000 2 2 2 2 2 2 2 2 2 2 2 3078400000 1992700000 1085700000 18140 3124 16667 91932;91933;91934;91935 111172;111173;111174;111175 111175 4 SVFEEEVR Unmodified 993.47673 0.47672516 1505 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 40.54 40.495 2 0.0013394 10323 20211116_3440_TMUAki_TMT10x_S_F2 123.72 84.914 1776400 2712100 2420.6 3523600 1394900 1217200 1486900 2026000 2485400 1940700 2593100 1654000 2533700 139340 3502900 1339600 1400400 1534300 2016500 2488600 1898900 2498200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1776400 2712100 2420.6 3523600 1394900 1217200 1486900 2026000 2485400 1940700 2593100 1654000 2533700 139340 3502900 1339600 1400400 1534300 2016500 2488600 1898900 2498200 2 2 1 2 2 2 2 2 2 2 2 98219000 0 98219000 18141 1505 16668 91936;91937;91938;91939 111176;111177;111178;111179 111179 4 SVFEEEVRETR Unmodified 1379.6681 0.66810776 1505 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 1 By MS/MS By MS/MS 1.83 0.687 2 3 1 2 4 36.676 36.616 2;3 2.0123E-11 10743 20211116_3439_TMUAki_TMT10x_S_F1 171.49 140.88 7615800 11185000 68013 14220000 13125000 12050000 8120500 8896700 9809500 7699200 10275000 7090500 10448000 640190 14260000 12454000 12338000 8550900 9168800 9922100 7568800 9897800 7 7 3 7 7 7 7 7 7 7 7 3490500 4932300 0 6738800 9496300 8839400 4493800 4238600 4476400 3383200 4736900 3249000 4609100 247130 6778500 8971500 8772100 4819200 4516100 4563900 3339400 4561400 2 2 0 2 2 2 2 2 2 2 2 4125300 6252400 68013 7481100 3628300 3210300 3626800 4658100 5333200 4316000 5538400 3841600 5838800 393060 7481300 3482700 3566400 3731700 4652700 5358200 4229400 5336400 5 5 3 5 5 5 5 5 5 5 5 1333500000 864790000 468750000 18142 1505 16669 91940;91941;91942;91943;91944;91945 111180;111181;111182;111183;111184;111185;111186 111182 7 SVFVGNIPYEATEEQLK Unmodified 1922.9626 0.96255845 907 P33240;P33240-2 CSTF2 Cleavage stimulation factor subunit 2 no no 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 2 3 70.687 70.657 3 1.5987E-21 23088 20211116_3433_TMUAki_TMT10x_P_F5 162.29 137.36 21181000 34101000 168920 34870000 27792000 24238000 23059000 21093000 18653000 20030000 24271000 19722000 31822000 1921300 35360000 26534000 25277000 23501000 21573000 19368000 19606000 23239000 7 7 4 7 7 7 7 7 7 7 7 6808800 11066000 69437 11494000 6774700 11232000 7594000 6406800 6126800 6784000 7621400 6340200 10327000 628730 11692000 6520700 11351000 7614600 6768800 6350200 6610100 7305800 2 2 2 2 2 2 2 2 2 2 2 14372000 23035000 99487 23376000 21017000 13006000 15465000 14686000 12526000 13246000 16649000 13382000 21495000 1292600 23668000 20013000 13927000 15886000 14804000 13018000 12996000 15933000 5 5 2 5 5 5 5 5 5 5 5 1948200000 613860000 1334300000 18143 907 16670 91946;91947;91948;91949;91950 111187;111188;111189;111190;111191;111192;111193;111194;111195 111188 9 SVGDGETVEFDVVEGEK Unmodified 1794.816 0.81595379 1410;699 P67809;Q9Y2T7;P16989;P16989-3;P16989-2 YBX1;YBX2;YBX3 Nuclease-sensitive element-binding protein 1;Y-box-binding protein 2;Y-box-binding protein 3 no no 0 0 0 0 By MS/MS By MS/MS 2.2 1.17 8 4 4 4 9 11 66.676 66.488 2;3 2.913E-124 21052 20211116_3439_TMUAki_TMT10x_S_F1 383.15 351.87 235530000 379440000 3227100 370640000 251520000 311660000 237650000 213110000 235830000 237170000 278180000 219310000 354020000 21331000 377860000 240920000 318920000 241730000 222370000 241500000 230650000 267030000 29 29 19 29 29 29 29 29 29 29 29 114290000 174720000 1903400 173210000 125960000 202690000 117550000 97239000 112970000 110640000 132110000 106430000 163020000 10718000 177250000 120630000 202300000 119530000 104590000 115810000 107500000 126850000 14 14 9 14 14 14 14 14 14 14 14 121240000 204720000 1323700 197440000 125560000 108970000 120100000 115870000 122860000 126540000 146070000 112890000 191000000 10613000 200610000 120290000 116620000 122200000 117780000 125690000 123140000 140190000 15 15 10 15 15 15 15 15 15 15 15 63885000000 32508000000 31377000000 18144 1410;699 16671 91951;91952;91953;91954;91955;91956;91957;91958;91959;91960;91961;91962;91963;91964;91965;91966;91967;91968;91969;91970 111196;111197;111198;111199;111200;111201;111202;111203;111204;111205;111206;111207;111208;111209;111210;111211;111212;111213;111214;111215;111216;111217;111218;111219;111220;111221;111222;111223;111224;111225;111226;111227 111215 32 SVGELPSTVESLQK Unmodified 1472.7722 0.77223848 1536 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 0 By MS/MS 5 0 1 1 58.199 58.333 3 0.0011456 16923 20211116_3444_TMUAki_TMT10x_S_F5 68.972 49.21 3813800 6101700 0 6452400 3760300 3272700 3213100 5995300 5123100 4929700 4831500 3550400 5694800 237520 6510200 3586700 3591300 3347000 5926300 5118000 4858500 4669800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3813800 6101700 0 6452400 3760300 3272700 3213100 5995300 5123100 4929700 4831500 3550400 5694800 237520 6510200 3586700 3591300 3347000 5926300 5118000 4858500 4669800 1 1 0 1 1 1 1 1 1 1 1 302860000 0 302860000 18145 1536 16672 91971 111228 111228 1 SVGFIGAGQLAFALAK Acetyl (Protein N-term) 1590.877 0.87697832 902 P32322;P32322-2 PYCR1 Pyrroline-5-carboxylate reductase 1, mitochondrial yes no 1 0 0 0 By MS/MS By MS/MS 2.75 0.829 4 2 2 4 4 82.962 82.952 2;3 1.6122E-60 30395 20211116_3441_TMUAki_TMT10x_S_F3 172.69 120.2 11469000 20311000 94316 17566000 16270000 18151000 14702000 13431000 12260000 12448000 16010000 10679000 18942000 1039100 18123000 15562000 18349000 14920000 13865000 12713000 12198000 15328000 9 9 5 9 9 9 9 9 9 9 9 5347800 9217600 71931 8116600 6038000 10542000 6307800 6222200 5696200 5844300 7285800 4979700 8596900 506250 8394300 5799700 10493000 6365200 6533000 5878000 5723400 6979100 4 4 3 4 4 4 4 4 4 4 4 6121300 11093000 22385 9449900 10232000 7609000 8394700 7209100 6564300 6603600 8724500 5699300 10345000 532860 9728900 9762700 7856100 8554500 7331800 6834800 6474400 8349300 5 5 2 5 5 5 5 5 5 5 5 1976000000 1056500000 919520000 18146 902 16673 91972;91973;91974;91975;91976;91977;91978;91979 111229;111230;111231;111232;111233;111234;111235;111236;111237 111235 9 SVGGACVLVA Unmodified 931.4797 0.47970205 1050 P46776 RPL27A 60S ribosomal protein L27a yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 54.471 54.608 2 0.042142 15421 20211116_3444_TMUAki_TMT10x_S_F5 57.177 45.273 12268000 19208000 66825 19994000 16244000 20580000 13084000 17986000 17112000 15361000 15219000 11422000 17926000 1025500 20350000 15493000 20871000 13561000 18339000 17165000 15110000 14740000 4 4 2 4 4 4 4 4 4 4 4 6773200 10624000 26832 10689000 10514000 16317000 8772100 10375000 9153900 9001000 8376100 6306700 9913200 629930 10984000 10039000 16142000 9000800 10808000 9268200 8847400 8104200 2 2 1 2 2 2 2 2 2 2 2 5494900 8584500 39993 9304500 5729400 4262400 4311800 7610700 7957900 6360000 6843300 5115800 8012900 395520 9365900 5453900 4728500 4560700 7531600 7896700 6263000 6636000 2 2 1 2 2 2 2 2 2 2 2 2065700000 1117800000 947900000 18147 1050 16674 91980;91981;91982;91983 111238;111239;111240;111241 111241 4 SVGKIEHSFWR Unmodified 1344.6939 0.693869 1847 Q16531;Q16531-2 DDB1 DNA damage-binding protein 1 yes no 0 0 0 1 By MS/MS 2 0 1 1 43.449 43.467 4 0.014465 11593 20211116_3440_TMUAki_TMT10x_S_F2 60.509 45.308 629040 1056200 7982.6 1167500 641000 413720 436650 816680 659200 627570 932670 585760 985960 59759 1171900 609960 477020 460480 804350 670590 620710 891240 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 629040 1056200 7982.6 1167500 641000 413720 436650 816680 659200 627570 932670 585760 985960 59759 1171900 609960 477020 460480 804350 670590 620710 891240 1 1 1 1 1 1 1 1 1 1 1 35702000 0 35702000 18148 1847 16675 91984 111242 111242 1 SVGMIAGGTGITPMLQVIR 2 Oxidation (M) 1932.0173 0.017253329 465 P00387;P00387-2;P00387-3 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 0 0 2 0 By MS/MS By MS/MS 2 0 2 1 1 63.096 62.832 3 0.0001604 20830 20211116_3429_TMUAki_TMT10x_P_F2 67.661 54.524 13864000 24214000 24077 22064000 16997000 20262000 15614000 15139000 14063000 14081000 17693000 12908000 22586000 1085800 22634000 16256000 20637000 15862000 15619000 14503000 13796000 16955000 4 4 1 4 4 4 4 4 4 4 4 6051400 10182000 0 8982300 8063300 13146000 7968700 7377300 6996700 6617100 8031300 5633500 9496200 410060 9310400 7721300 13006000 8057800 7769100 7197200 6493900 7715500 2 2 0 2 2 2 2 2 2 2 2 7812800 14032000 24077 13081000 8933500 7115200 7645300 7761300 7065900 7464100 9661500 7274600 13090000 675790 13323000 8534300 7631100 7804400 7849700 7305800 7302100 9239700 2 2 1 2 2 2 2 2 2 2 2 1130300000 696150000 434140000 18149 465 16676 91985;91986 111243;111244;111245;111246 111243 352;353 4 SVGMIAGGTGITPMLQVIR Oxidation (M) 1916.0223 0.022338707 465 P00387;P00387-2;P00387-3 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 0 0 1 0 By MS/MS By MS/MS 3 0 2 1 1 69.177 68.811 3 1.4585E-08 24778 20211116_3441_TMUAki_TMT10x_S_F3 110.37 83.158 8301100 13758000 185150 14050000 10705000 13314000 11285000 7658500 5917100 7714500 10296000 7730500 12839000 894430 14302000 10290000 13482000 11251000 8073700 6409900 7532000 9796300 3 3 3 3 3 3 3 3 3 3 3 6158600 10180000 149150 10313000 7698400 11009000 9026800 5451900 4140100 5610600 7377600 5735300 9499700 671150 10522000 7424000 11047000 8935500 5828300 4540600 5473000 7016700 2 2 2 2 2 2 2 2 2 2 2 2142500 3578100 36004 3737300 3006200 2305200 2258400 2206600 1777000 2103900 2918100 1995100 3339400 223280 3780000 2865900 2434500 2315000 2245400 1869300 2059000 2779600 1 1 1 1 1 1 1 1 1 1 1 722380000 263110000 459270000 18150 465 16676 91987;91988 111247;111248;111249 111249 352;353 3 SVGNTIDPVILFQK Unmodified 1529.8453 0.84534384 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.09 2.5 2 2 3 4 6 5 76.981 76.989 2;3 4.7149E-43 25167 20211116_3436_TMUAki_TMT10x_P_F8 263.57 234.23 112020000 182270000 485450 170950000 125210000 175140000 126520000 121340000 111050000 120780000 134590000 104300000 170040000 8935300 175260000 120060000 176950000 127780000 126070000 114490000 117980000 129110000 10 10 3 10 10 10 10 10 10 10 10 60172000 97760000 437300 90000000 63813000 119280000 71353000 65504000 59587000 66348000 72123000 56027000 91191000 5111900 92801000 61381000 118500000 71618000 69339000 61580000 64764000 69186000 5 5 2 5 5 5 5 5 5 5 5 51849000 84513000 48150 80946000 61399000 55852000 55162000 55834000 51466000 54430000 62472000 48271000 78847000 3823400 82455000 58675000 58446000 56165000 56727000 52910000 53217000 59924000 5 5 1 5 5 5 5 5 5 5 5 18907000000 10470000000 8437000000 18151 1057 16677 91989;91990;91991;91992;91993;91994;91995;91996;91997;91998;91999 111250;111251;111252;111253;111254;111255;111256;111257;111258;111259;111260;111261 111255 12 SVGRPPGPYTR Unmodified 1185.6255 0.62545508 3292 Q9Y483;Q9Y483-2;Q9Y483-3;Q9Y483-4 MTF2 Metal-response element-binding transcription factor 2 yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 29.081 28.964 3 8.1025E-05 7161 20211116_3429_TMUAki_TMT10x_P_F2 98.902 71.598 236670 377700 5235.8 340080 364360 462630 273390 255910 257560 254000 286480 220400 352290 26289 351430 347400 459090 281580 270570 263740 248150 275460 1 1 1 1 1 1 1 1 1 1 1 236670 377700 5235.8 340080 364360 462630 273390 255910 257560 254000 286480 220400 352290 26289 351430 347400 459090 281580 270570 263740 248150 275460 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21531000 21531000 0 18152 3292 16678 92000;92001;92002 111262;111263 111262 2 SVGYKPDFVGFEIPDK Unmodified 1796.8985 0.89850163 470 P00492 HPRT1 Hypoxanthine-guanine phosphoribosyltransferase yes yes 0 0 0 1 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 69.046 69.262 3 2.1297E-10 23753 20211116_3446_TMUAki_TMT10x_S_F7 123.14 104.31 33074000 51458000 138140 64643000 28534000 28636000 33397000 20075000 20355000 22160000 33850000 30795000 48065000 2722600 64477000 27485000 31201000 33218000 20906000 21757000 21556000 32236000 5 5 2 5 5 5 5 5 5 5 5 8827700 13262000 0 16880000 6818800 10057000 7860300 4491100 5239200 5538600 8276400 8219200 12389000 666720 16863000 6562000 10541000 7837400 4878500 5552400 5366100 7889900 1 1 0 1 1 1 1 1 1 1 1 24246000 38195000 138140 47763000 21715000 18579000 25537000 15584000 15116000 16621000 25574000 22576000 35676000 2055900 47614000 20923000 20660000 25381000 16027000 16205000 16190000 24346000 4 4 2 4 4 4 4 4 4 4 4 2840900000 1184100000 1656700000 18153 470 16679 92003;92004;92005 111264;111265;111266;111267;111268 111266 5 SVIDPVPAPVGDSHVDGAAK Unmodified 1929.9796 0.97960549 1606 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 48.967 49.077 3 7.9536E-25 15604 20211116_3430_TMUAki_TMT10x_P_F3 173.27 151.74 12830000 21537000 164480 25374000 16719000 18151000 12034000 19202000 19732000 16415000 18950000 11947000 20111000 1244200 25507000 15921000 18960000 12689000 19386000 19709000 16147000 18305000 8 8 5 8 8 8 8 8 8 8 8 4678900 7538900 19405 9320300 11011000 12494000 7130100 6954600 7204400 5911200 7017500 4356500 7041200 474200 9429800 10460000 12407000 7437600 7319200 7319300 5816200 6775300 4 4 2 4 4 4 4 4 4 4 4 8151100 13998000 145080 16054000 5708100 5657600 4903500 12247000 12527000 10504000 11933000 7590500 13070000 769950 16077000 5461300 6552900 5251900 12067000 12390000 10331000 11530000 4 4 3 4 4 4 4 4 4 4 4 2487400000 1293700000 1193800000 18154 1606 16680 92006;92007;92008;92009 111269;111270;111271;111272;111273;111274;111275;111276 111269 8 SVIDYQTHFR Unmodified 1264.62 0.62003536 2126 Q86XR7-2;Q9Y3B3;Q9Y3B3-2 TMED7 Transmembrane emp24 domain-containing protein 7 yes no 0 0 0 0 By MS/MS By MS/MS 6 0.632 1 3 1 2 3 37.846 38.039 3 2.4062E-11 8950 20211116_3434_TMUAki_TMT10x_P_F6 206.49 165.04 1435000 2279100 10737 2400000 3252200 3007600 1950600 2106900 1826000 1603100 2012100 1336100 2127100 136490 2449000 3085100 3006300 2042800 2172600 1869700 1586400 1935200 4 4 2 4 4 4 4 4 4 4 4 1181100 1877000 6083.7 1921600 3014200 2806500 1706200 1821000 1555400 1356400 1682000 1099600 1751600 112840 1970400 2856600 2782300 1794400 1887300 1593400 1343900 1618600 2 2 1 2 2 2 2 2 2 2 2 253920 402110 4653.7 478420 237960 201150 244380 285940 270610 246700 330090 236440 375500 23650 478530 228510 223930 248370 285270 276260 242550 316590 2 2 1 2 2 2 2 2 2 2 2 395550000 352180000 43372000 18155 2126 16681 92010;92011;92012;92013;92014 111277;111278;111279;111280;111281 111277 5 SVIEDVINDVR Unmodified 1257.6565 0.65648044 1182 P52655 GTF2A1 Transcription initiation factor IIA subunit 1;Transcription initiation factor IIA alpha chain;Transcription initiation factor IIA beta chain yes yes 0 0 0 0 By MS/MS 1 0 1 1 71.699 71.571 2 0.0042368 24811 20211116_3439_TMUAki_TMT10x_S_F1 72.434 44.813 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18156 1182 16682 92015 111282 111282 1 SVIEPLPVTPTR Unmodified 1307.7449 0.74490152 1602 Q13153;Q13153-2 PAK1 Serine/threonine-protein kinase PAK 1 yes no 0 0 0 0 By MS/MS 6 0 1 1 52.393 52.524 2 0.0020041 14839 20211116_3445_TMUAki_TMT10x_S_F6 76.416 54.285 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18157 1602 16683 92016 111283 111283 1 SVIEQGGIQTVDQLIK Unmodified 1726.9465 0.94651445 2301 Q8WUM4;Q8WUM4-2 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 72.918 72.895 3 5.9148E-16 22890 20211116_3444_TMUAki_TMT10x_S_F5 158.29 124.61 29271000 49747000 170160 43857000 35805000 43453000 35276000 35004000 33960000 35051000 38085000 27255000 46397000 2243500 45151000 34325000 44103000 35769000 36018000 34752000 34231000 36611000 8 8 6 8 8 8 8 8 8 8 8 11414000 19431000 88322 16194000 12129000 23541000 14490000 12857000 12552000 13692000 15061000 10628000 18120000 664070 16859000 11694000 23289000 14515000 13636000 12943000 13338000 14451000 3 3 2 3 3 3 3 3 3 3 3 17857000 30315000 81834 27663000 23676000 19913000 20785000 22148000 21408000 21359000 23024000 16627000 28277000 1579500 28292000 22630000 20814000 21254000 22382000 21809000 20893000 22160000 5 5 4 5 5 5 5 5 5 5 5 4760600000 2083100000 2677600000 18158 2301 16684 92017;92018;92019;92020;92021;92022 111284;111285;111286;111287;111288;111289;111290;111291;111292 111291 9 SVILEAFSSPSEEVK Unmodified 1620.8247 0.82466798 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.75 1.61 2 3 4 4 3 4 10 10 71.281 71.286 2;3 1.0288E-44 23592 20211116_3442_TMUAki_TMT10x_S_F4 276.35 234.81 153050000 257160000 2129300 239350000 184820000 246980000 196460000 176340000 154200000 178200000 199630000 142520000 239900000 14524000 245550000 177590000 249550000 197360000 182920000 160330000 173960000 191170000 28 28 18 28 28 28 28 28 28 28 28 87535000 141770000 1497600 134700000 98531000 173480000 117470000 101240000 85923000 99930000 111560000 81513000 132260000 8620300 138490000 95031000 172720000 117180000 106540000 89702000 97651000 106830000 14 14 10 14 14 14 14 14 14 14 14 65518000 115390000 631700 104650000 86284000 73501000 78990000 75103000 68278000 78271000 88068000 61005000 107630000 5903700 107050000 82562000 76836000 80173000 76374000 70633000 76313000 84344000 14 14 8 14 14 14 14 14 14 14 14 22008000000 12918000000 9089900000 18159 2116 16685 92023;92024;92025;92026;92027;92028;92029;92030;92031;92032;92033;92034;92035;92036;92037;92038;92039;92040;92041;92042 111293;111294;111295;111296;111297;111298;111299;111300;111301;111302;111303;111304;111305;111306;111307;111308;111309;111310;111311;111312;111313;111314;111315;111316;111317;111318;111319;111320;111321;111322 111313 30 SVLAAATEYFTPLLSGQFSESR Unmodified 2373.1852 0.18524117 2978 Q9NVR0 KLHL11 Kelch-like protein 11 yes yes 0 0 0 0 By MS/MS 3 0 1 1 81.954 81.9 3 0.0046646 29030 20211116_3430_TMUAki_TMT10x_P_F3 50.531 39.744 876770 1244300 3705.5 1430900 758870 1344600 1017400 766370 691520 824190 1065900 816390 1161700 74493 1445300 734370 1362100 1008400 810100 731040 802570 1016600 1 1 1 1 1 1 1 1 1 1 1 876770 1244300 3705.5 1430900 758870 1344600 1017400 766370 691520 824190 1065900 816390 1161700 74493 1445300 734370 1362100 1008400 810100 731040 802570 1016600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 101540000 101540000 0 18160 2978 16686 92043 111323 111323 1 SVLAETEGILQK Unmodified 1286.7082 0.70818166 2107 Q86UP2;Q86UP2-3;Q86UP2-4;Q86UP2-2 KTN1 Kinectin yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 66.997 67.072 3 2.1205E-07 20553 20211116_3444_TMUAki_TMT10x_S_F5 125.97 76.47 4253200 7031300 58165 7181500 5306100 6249400 4789300 4940400 5113900 4954200 5306600 3960600 6561500 421570 7301700 5078200 6394500 4895000 5089500 5195100 4838000 5113100 2 2 2 2 2 2 2 2 2 2 2 2028600 3268700 25910 3176000 2544900 4260700 2619400 2319300 2296400 2243800 2569000 1889000 3049700 199570 3262800 2443600 4230000 2643100 2453900 2360000 2194500 2469800 1 1 1 1 1 1 1 1 1 1 1 2224600 3762600 32255 4005500 2761200 1988700 2169900 2621100 2817400 2710500 2737500 2071500 3511800 222010 4039000 2634600 2164500 2252000 2635700 2835100 2643500 2643300 1 1 1 1 1 1 1 1 1 1 1 742440000 274460000 467990000 18161 2107 16687 92044;92045 111324;111325 111325 2 SVLCSTPTINIPASPFMQK Oxidation (M) 2106.0489 0.048947388 2510 Q96KB5;Q96KB5-2 PBK Lymphokine-activated killer T-cell-originated protein kinase yes no 0 0 1 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 73.798 73.599 3 1.054E-12 26677 20211116_3441_TMUAki_TMT10x_S_F3 135.09 119.84 13340000 23095000 153130 19493000 14244000 22740000 15688000 15612000 14768000 16042000 16295000 12422000 21537000 943110 20189000 13702000 22806000 15809000 16245000 15118000 15650000 15672000 5 5 2 5 5 5 5 5 5 5 5 9040400 15851000 153130 12883000 8968800 17543000 10624000 10551000 10182000 11037000 10437000 8418600 14780000 600910 13422000 8650600 17427000 10676000 11095000 10387000 10759000 10060000 3 3 2 3 3 3 3 3 3 3 3 4299500 7244300 0 6610300 5275400 5197600 5063400 5060700 4586300 5005000 5858100 4003000 6757300 342200 6767300 5051200 5379000 5132400 5150700 4731800 4890400 5611800 2 2 0 2 2 2 2 2 2 2 2 2597900000 1600200000 997770000 18162 2510 16688 92046;92047;92048 111326;111327;111328;111329;111330 111329 2783 5 SVLDAAQIVGLNCLR Unmodified 1627.8716 0.87157537 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 0 By MS/MS By MS/MS 3.5 3.04 5 3 1 3 6 6 77.309 77.276 2;3 2.9922E-85 25361 20211116_3440_TMUAki_TMT10x_S_F2 346.96 314.21 60197000 101830000 133110 92876000 71905000 85737000 69878000 59451000 52563000 61789000 74012000 56044000 94986000 4377600 95275000 68844000 87193000 70450000 61842000 54993000 60250000 70733000 10 10 2 10 10 10 10 10 10 10 10 26201000 43612000 52771 38696000 25097000 47518000 30138000 24158000 21743000 27034000 31005000 24393000 40676000 1873000 39956000 24173000 47339000 30047000 25827000 22816000 26285000 29623000 4 4 1 4 4 4 4 4 4 4 4 33997000 58220000 80339 54180000 46807000 38219000 39740000 35293000 30820000 34755000 43007000 31650000 54310000 2504600 55319000 44671000 39854000 40403000 36015000 32177000 33966000 41110000 6 6 1 6 6 6 6 6 6 6 6 15902000000 8233000000 7668700000 18163 2345 16689 92049;92050;92051;92052;92053;92054;92055;92056;92057;92058;92059;92060 111331;111332;111333;111334;111335;111336;111337;111338;111339;111340;111341;111342 111339 12 SVLEQTK Unmodified 803.43888 0.43888309 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 0 By MS/MS 5 0 1 1 35.142 35.318 2 0.011814 7660 20211116_3444_TMUAki_TMT10x_S_F5 96.711 48.968 466950 770340 5721.1 759860 466120 387470 473750 521520 540060 471990 667930 434810 718770 44033 770350 447470 420710 482200 522000 551050 463010 640370 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 466950 770340 5721.1 759860 466120 387470 473750 521520 540060 471990 667930 434810 718770 44033 770350 447470 420710 482200 522000 551050 463010 640370 1 1 1 1 1 1 1 1 1 1 1 9773300 0 9773300 18164 916 16690 92061 111343 111343 1 SVLGDVGITEVFSDR Unmodified 1592.8046 0.80460124 45 CON__P34955 yes yes 0 0 0 0 By MS/MS By MS/MS 3.62 1.05 3 4 5 4 9 7 76.741 76.702 2;3 6.7769E-72 25313 20211116_3431_TMUAki_TMT10x_P_F4 317.81 291.7 + 51206000 80497000 348240 66633000 73582000 83100000 74871000 101290000 105160000 100370000 80666000 47675000 75061000 4216000 69202000 70564000 84049000 76815000 102040000 104790000 98062000 78574000 17 17 9 17 17 17 17 17 17 17 17 26044000 39531000 90266 32739000 30703000 55555000 41032000 49762000 51730000 49721000 39248000 24247000 36861000 1891600 34220000 29677000 55058000 41412000 50886000 51715000 48562000 38248000 9 9 4 9 9 9 9 9 9 9 9 25161000 40967000 257970 33894000 42879000 27544000 33838000 51530000 53432000 50646000 41417000 23428000 38200000 2324400 34982000 40886000 28991000 35403000 51155000 53074000 49500000 40326000 8 8 5 8 8 8 8 8 8 8 8 10120000000 6071800000 4047800000 18165 45 16691 92062;92063;92064;92065;92066;92067;92068;92069;92070;92071;92072;92073;92074;92075;92076;92077 111344;111345;111346;111347;111348;111349;111350;111351;111352;111353;111354;111355;111356;111357;111358;111359;111360;111361;111362;111363 111349 20 SVLGEADQK Unmodified 945.47673 0.47672516 1104 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS 4 0 1 1 36.019 36.126 2 0.00041314 9248 20211116_3442_TMUAki_TMT10x_S_F4 123.86 71.605 84995 145580 0 156420 96730 81697 110220 74074 114260 93572 139590 79118 135880 4653.1 157690 92922 87666 111220 76282 116970 90584 133870 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 84995 145580 0 156420 96730 81697 110220 74074 114260 93572 139590 79118 135880 4653.1 157690 92922 87666 111220 76282 116970 90584 133870 1 1 0 1 1 1 1 1 1 1 1 2793400 0 2793400 18166 1104 16692 92078 111364 111364 1 SVLGGQDQLR Unmodified 1071.5673 0.5672715 2682 Q9BV38 WDR18 WD repeat-containing protein 18 yes yes 0 0 0 0 By MS/MS 4 0 3 3 35.06 35.148 2 0.000124 8765 20211116_3442_TMUAki_TMT10x_S_F4 94.692 58.565 128220 213690 336.17 232600 130490 102990 127000 141170 149700 124560 171610 119390 199470 10976 234020 125060 113770 129710 141100 152080 122340 164870 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 128220 213690 336.17 232600 130490 102990 127000 141170 149700 124560 171610 119390 199470 10976 234020 125060 113770 129710 141100 152080 122340 164870 1 1 1 1 1 1 1 1 1 1 1 8511200 0 8511200 18167 2682 16693 92079;92080;92081 111365;111366;111367 111367 3 SVLHEVMEQQTLSIAK Unmodified 1811.9451 0.94513424 911 P33991 MCM4 DNA replication licensing factor MCM4 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 73.168 73.541 3 3.581E-05 30901 20211116_3446_TMUAki_TMT10x_S_F7 84.14 56.643 6710300 11977000 19504 12910000 8812900 12558000 8853600 6969900 5738600 6426300 7674500 6246700 11179000 429100 13099000 8441100 12689000 8882000 7352200 6043100 6298600 7343400 3 3 2 3 3 3 3 3 3 3 3 5538800 9893600 0 10759000 7385900 11308000 7534100 5724800 4618200 5218200 6177700 5155800 9235000 310220 10923000 7074300 11361000 7544100 6087200 4881200 5117200 5911100 1 1 0 1 1 1 1 1 1 1 1 1171500 2083200 19504 2150800 1427000 1249500 1319500 1245100 1120400 1208100 1496800 1090900 1944100 118880 2175900 1366800 1328400 1337900 1265000 1161900 1181400 1432200 2 2 2 2 2 2 2 2 2 2 2 927460000 899820000 27630000 18168 911 16694 92082;92083 111368;111369;111370 111370 3 SVLHEVMEQQTLSIAK Oxidation (M) 1827.94 0.94004887 911 P33991 MCM4 DNA replication licensing factor MCM4 yes yes 0 0 1 0 By MS/MS 6 0 1 1 51.842 51.974 3 2.5177E-07 14632 20211116_3445_TMUAki_TMT10x_S_F6 102.38 87.223 1543100 2595800 0 2787400 1431600 1576600 1273500 2286200 2478500 2099000 2075400 1436500 2422800 99842 2812000 1367000 1696700 1337400 2283000 2454500 2057700 2014500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1543100 2595800 0 2787400 1431600 1576600 1273500 2286200 2478500 2099000 2075400 1436500 2422800 99842 2812000 1367000 1696700 1337400 2283000 2454500 2057700 2014500 1 1 0 1 1 1 1 1 1 1 1 198170000 0 198170000 18169 911 16694 92084 111371 111371 1126 1 SVLIGEFLEK Unmodified 1133.6332 0.6332258 197 O43148;O43148-2 RNMT mRNA cap guanine-N7 methyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 76.675 76.69 2 3.7605E-06 24822 20211116_3445_TMUAki_TMT10x_S_F6 145.34 92.17 22297000 38460000 357300 34533000 26798000 32959000 28998000 24121000 23604000 28124000 30193000 20763000 35873000 2236600 35483000 25771000 33475000 29132000 25091000 24483000 27302000 28922000 4 4 3 4 4 4 4 4 4 4 4 8638300 14753000 214810 13256000 9816700 17649000 11608000 9702100 9075300 10189000 10924000 8044700 13761000 932870 13695000 9470800 17530000 11603000 10280000 9409000 9931000 10481000 2 2 2 2 2 2 2 2 2 2 2 13658000 23707000 142500 21277000 16981000 15310000 17390000 14419000 14528000 17935000 19269000 12718000 22112000 1303700 21788000 16300000 15945000 17529000 14811000 15074000 17371000 18441000 2 2 1 2 2 2 2 2 2 2 2 1330700000 932730000 398010000 18170 197 16695 92085;92086;92087 111372;111373;111374;111375 111375 4 SVLISLK Unmodified 758.49019 0.49019038 580 P09496-2;P09496;P09496-4;P09496-3;P09496-5 CLTA Clathrin light chain A yes no 0 0 0 0 By MS/MS 2 0 1 1 57.096 56.845 2 0.0071116 18380 20211116_3429_TMUAki_TMT10x_P_F2 139.28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18171 580 16696 92088 111376 111376 1 SVLLLAYKPMEGNFEEIAR Oxidation (M) 2195.1296 0.12964055 1847 Q16531;Q16531-2 DDB1 DNA damage-binding protein 1 yes no 0 0 1 1 By MS/MS By MS/MS 5.57 2.97 2 1 1 3 3 4 70.788 70.771 3;4 6.6413E-06 22421 20211116_3428_TMUAki_TMT10x_P_F1 85.087 75.337 63271000 107540000 334670 86343000 65018000 109990000 70048000 76855000 72972000 75695000 81433000 58910000 100270000 5112200 89935000 62459000 109850000 70881000 79778000 74409000 73975000 78293000 9 9 5 9 9 9 9 9 9 9 9 35602000 58390000 188400 45274000 31896000 76739000 36649000 42943000 41632000 42820000 46603000 33147000 54435000 2721500 47584000 30691000 75476000 37080000 45364000 42311000 41826000 44802000 4 4 1 4 4 4 4 4 4 4 4 27670000 49151000 146280 41069000 33122000 33250000 33399000 33912000 31340000 32875000 34830000 25763000 45833000 2390700 42351000 31767000 34370000 33800000 34415000 32097000 32150000 33491000 5 5 4 5 5 5 5 5 5 5 5 13277000000 7973000000 5304500000 18172 1847 16697 92089;92090;92091;92092;92093;92094;92095 111377;111378;111379;111380;111381;111382;111383;111384;111385 111377 2458 9 SVLLLAYKPMEGNFEEIAR Unmodified 2179.1347 0.13472593 1847 Q16531;Q16531-2 DDB1 DNA damage-binding protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 6.25 3.03 1 3 3 1 77.247 77.233 3 1.4129E-12 24703 20211116_3447_TMUAki_TMT10x_S_F8 135.49 120.34 12037000 19083000 0 18487000 11692000 10740000 13801000 5004400 4074200 5669500 11735000 11207000 17804000 884910 18786000 11257000 11290000 13588000 5397500 4842300 5509700 11083000 2 2 0 2 2 2 2 2 2 2 2 4187800 5995800 0 5459300 3259100 5368600 4407700 2192100 1598800 2181800 4055900 3898900 5592700 297380 5606000 3151400 5403400 4323900 2388800 1836600 2131200 3836600 1 1 0 1 1 1 1 1 1 1 1 7849000 13087000 0 13028000 8433100 5371600 9393500 2812300 2475400 3487800 7679100 7307600 12211000 587530 13180000 8105600 5887000 9263900 3008700 3005700 3378500 7246700 1 1 0 1 1 1 1 1 1 1 1 4704000000 2358400000 2345600000 18173 1847 16697 92096;92097;92098;92099 111386;111387;111388 111388 3 SVLLPTHR Unmodified 921.5396 0.53960019 2001 Q6P6C2;Q6P6C2-1;Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 yes no 0 0 0 0 By MS/MS 1 0 1 1 32.907 32.918 3 0.016338 9120 20211116_3439_TMUAki_TMT10x_S_F1 60.118 51.296 482310 711680 0 715720 383650 371490 498300 356120 463320 397930 478950 449080 664090 38056 724720 370710 399340 498370 364110 473430 386920 461540 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482310 711680 0 715720 383650 371490 498300 356120 463320 397930 478950 449080 664090 38056 724720 370710 399340 498370 364110 473430 386920 461540 1 1 0 1 1 1 1 1 1 1 1 16586000 0 16586000 18174 2001 16698 92100 111389 111389 1 SVLRPAVLQAPQPK Unmodified 1502.8933 0.89329709 2821 Q9H6Z4;Q9H6Z4-2;Q9H6Z4-3 RANBP3 Ran-binding protein 3 yes no 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 44.785 44.947 3 3.5714E-14 12692 20211116_3442_TMUAki_TMT10x_S_F4 137.93 111.34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18175 2821 16699 92101;92102 111390;111391 111391 2 SVLVSAGNVKR Unmodified 1128.6615 0.66150624 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 35.597 35.358 3 3.5209E-08 11153 20211116_3441_TMUAki_TMT10x_S_F3 143.79 114.12 1060300 1835600 0 1906900 1177400 937240 1061300 1246100 1250200 994310 1415300 986890 1713100 47505 1925800 1123300 1021500 1088400 1243900 1269400 981470 1360200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1060300 1835600 0 1906900 1177400 937240 1061300 1246100 1250200 994310 1415300 986890 1713100 47505 1925800 1123300 1021500 1088400 1243900 1269400 981470 1360200 1 1 0 1 1 1 1 1 1 1 1 72817000 0 72817000 18176 1695 16700 92103;92104 111392;111393 111393 2 SVMDATQIAGLNCLR Oxidation (M) 1663.8022 0.80217518 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 1 0 By MS/MS By MS/MS 6.8 0.4 1 4 3 2 57.296 57.733 2;3 5.1217E-07 18999 20211116_3446_TMUAki_TMT10x_S_F7 115.12 99.301 13716000 23897000 78834 21726000 18171000 16687000 16039000 18154000 16140000 17146000 19379000 12771000 22291000 1198500 22242000 17370000 17344000 16383000 18353000 16530000 16788000 18594000 5 5 3 5 5 5 5 5 5 5 5 2222600 3720700 3599.7 3631400 2959700 5017700 3167300 3029300 2750800 2921200 3121900 2069400 3471500 197940 3731700 2843300 4981500 3189000 3177100 2829900 2857500 3000100 1 1 1 1 1 1 1 1 1 1 1 11494000 20177000 75234 18095000 15212000 11669000 12871000 15124000 13389000 14225000 16257000 10702000 18819000 1000500 18511000 14526000 12362000 13194000 15176000 13700000 13930000 15594000 4 4 2 4 4 4 4 4 4 4 4 1376700000 484370000 892360000 18177 916 16701 92105;92106;92107;92108;92109 111394;111395;111396;111397;111398;111399;111400 111399 1157 7 SVMDATQIAGLNCLR Unmodified 1647.8073 0.80726055 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 0 By MS/MS By MS/MS 7.75 0.433 1 3 3 1 66.193 66.266 2;3 1.762E-51 20747 20211116_3436_TMUAki_TMT10x_P_F8 289.59 257.59 9226800 15087000 117840 16309000 10908000 12958000 11387000 6552100 4802700 7004300 10735000 8591800 14083000 888670 16501000 10478000 13263000 11321000 6998500 5384500 6822100 10172000 4 4 3 4 4 4 4 4 4 4 4 6924700 10619000 55712 11333000 7863600 11245000 8885400 5054900 3663100 5251000 7768600 6447900 9911700 629510 11510000 7568400 11322000 8797700 5457800 4100700 5120300 7367000 3 3 2 3 3 3 3 3 3 3 3 2302100 4467800 62128 4976100 3044400 1713200 2501400 1497100 1139600 1753300 2966000 2143900 4170900 259160 4991800 2909200 1941700 2523500 1540700 1283800 1701800 2804700 1 1 1 1 1 1 1 1 1 1 1 1767800000 1168400000 599430000 18178 916 16701 92110;92111;92112;92113 111401;111402;111403;111404;111405 111404 5 SVMEELKR Oxidation (M) 1006.5117 0.51173046 1309;2405 P61326;Q96A72 MAGOH;MAGOHB Protein mago nashi homolog;Protein mago nashi homolog 2 no no 0 0 1 1 By MS/MS By MS/MS 5 0.707 1 2 1 2 2 31.524 31.595 3 0.029389 7021 20211116_3431_TMUAki_TMT10x_P_F4 52.937 27.363 1290100 2094600 10112 1829500 2153100 2767900 1563000 1662300 1797800 1617400 2063300 1201300 1953500 122890 1899200 2050000 2737000 1623600 1744500 1828100 1581500 1982200 4 4 2 4 4 4 4 4 4 4 4 1155500 1918400 9142.3 1620900 2034500 2672400 1438600 1578100 1699900 1516200 1892700 1076000 1788900 113090 1690300 1936100 2633000 1498500 1657900 1724800 1483400 1819900 2 2 1 2 2 2 2 2 2 2 2 134580 176260 969.66 208630 118550 95511 124390 84125 97827 101170 170590 125310 164590 9799.7 208860 113880 104020 125050 86618 103270 98110 162310 2 2 1 2 2 2 2 2 2 2 2 63470000 60093000 3376100 18179 1309;2405 16702 92114;92115;92116;92117 111406;111407 111406 1768 2 SVMEELKR Unmodified 990.51682 0.51681584 1309;2405 P61326;Q96A72 MAGOH;MAGOHB Protein mago nashi homolog;Protein mago nashi homolog 2 no no 0 0 0 1 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 38.698 38.783 3 0.0010801 9085 20211116_3445_TMUAki_TMT10x_S_F6 116.05 65.173 1156600 1679200 5802.6 1819200 2463000 1896500 1442000 1003600 847000 911330 1441700 1076900 1567400 119590 1847200 2336300 1907200 1497700 1062700 908820 893850 1372400 2 2 2 2 2 2 2 2 2 2 2 868520 1265000 3453 1398000 2156500 1672000 1129900 757540 664050 698620 1093900 808700 1180900 93264 1420900 2042200 1665800 1185400 814600 711200 684740 1041900 1 1 1 1 1 1 1 1 1 1 1 288080 414160 2349.6 421180 306470 224520 312110 246030 182950 212710 347870 268250 386480 26331 426230 294140 241340 312290 248060 197620 209110 330480 1 1 1 1 1 1 1 1 1 1 1 57112000 43848000 13264000 18180 1309;2405 16702 92118;92119;92120 111408;111409;111410 111410 3 SVMTEEYKVPDGMVGFIIGR 2 Oxidation (M) 2259.0915 0.091540484 2408;2407 Q96AE4-2;Q96AE4 FUBP1 Far upstream element-binding protein 1 no no 0 0 2 1 By MS/MS By MS/MS 6.09 0.793 3 4 4 5 6 61.544 61.796 3;4 2.5019E-09 18259 20211116_3434_TMUAki_TMT10x_P_F6 114.3 96.704 47433000 81947000 469310 63668000 61680000 107430000 58157000 116910000 124200000 103880000 81593000 44166000 76397000 4275400 66897000 59062000 106950000 61220000 118000000 121960000 101990000 80029000 11 11 8 11 11 11 11 11 11 11 11 23188000 37697000 195730 28560000 26779000 66450000 26838000 52698000 58230000 47317000 35941000 21590000 35141000 1918100 30348000 25675000 65049000 28191000 54113000 57075000 46434000 35361000 5 5 4 5 5 5 5 5 5 5 5 24245000 44250000 273590 35108000 34901000 40976000 31319000 64216000 65975000 56560000 45652000 22576000 41256000 2357300 36550000 33388000 41904000 33028000 63889000 64880000 55555000 44668000 6 6 4 6 6 6 6 6 6 6 6 15343000000 7899400000 7443800000 18181 2408;2407 16703 92121;92122;92123;92124;92125;92126;92127;92128;92129;92130;92131 111411;111412;111413;111414;111415;111416;111417;111418;111419;111420;111421 111414 2740;2741 11 SVMTEEYKVPDGMVGFIIGR Oxidation (M) 2243.0966 0.096625862 2408;2407 Q96AE4-2;Q96AE4 FUBP1 Far upstream element-binding protein 1 no no 0 0 1 1 By MS/MS By MS/MS 6.67 1.03 2 3 4 3 4 8 70.968 71.082 3 3.6723E-24 25609 20211116_3446_TMUAki_TMT10x_S_F7 160.67 148.86 136540000 225080000 731790 197700000 165970000 177210000 172510000 85764000 69275000 109040000 150730000 127140000 209930000 11911000 203310000 159310000 179740000 171450000 92511000 77883000 105540000 142880000 18 18 11 18 18 18 18 18 18 18 18 60265000 99504000 482650 83643000 59584000 99990000 72295000 38939000 32508000 50068000 66231000 56116000 92788000 5389000 86695000 57478000 99483000 71435000 43005000 36009000 48440000 62847000 8 8 7 8 8 8 8 8 8 8 8 76278000 125580000 249140 114050000 106380000 77222000 100220000 46825000 36766000 58972000 84498000 71020000 117140000 6521600 116620000 101830000 80258000 100010000 49506000 41874000 57095000 80034000 10 10 4 10 10 10 10 10 10 10 10 11897000000 5109700000 6787500000 18182 2408;2407 16703 92132;92133;92134;92135;92136;92137;92138;92139;92140;92141;92142;92143 111422;111423;111424;111425;111426;111427;111428;111429;111430;111431;111432;111433;111434;111435;111436;111437;111438;111439;111440;111441 111437 2740;2741 20 SVMTEEYKVPDGMVGFIIGR Unmodified 2227.1017 0.10171124 2408;2407 Q96AE4-2;Q96AE4 FUBP1 Far upstream element-binding protein 1 no no 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 77.304 77.372 3 1.7868E-06 26753 20211116_3435_TMUAki_TMT10x_P_F7 84.919 69.665 8902400 14525000 123680 13918000 9727900 10635000 10429000 6062900 5570100 6171500 8933800 8289900 13551000 864900 14192000 9352700 10934000 10392000 6398400 5998600 6023000 8514000 2 2 2 2 2 2 2 2 2 2 2 5768200 8863400 45092 9056200 5584100 7550300 6726500 3494900 3175700 3678300 5738400 5371100 8271200 517670 9202700 5385700 7693500 6653300 3763500 3477100 3584900 5456300 1 1 1 1 1 1 1 1 1 1 1 3134200 5661200 78588 4861800 4143800 3084800 3702700 2568000 2394300 2493200 3195500 2918800 5279500 347230 4989700 3966900 3240600 3738400 2634800 2521500 2438100 3057700 1 1 1 1 1 1 1 1 1 1 1 1726000000 800220000 925810000 18183 2408;2407 16703 92144;92145 111442;111443 111442 2 SVNDQPSGNLPFLKPDDIQYFDK Unmodified 2636.2758 0.27584709 345 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 0 1 By MS/MS By MS/MS 6.41 1.29 1 4 4 3 5 9 8 76.297 76.301 3;4 1.2863E-27 24654 20211116_3445_TMUAki_TMT10x_S_F6 162.01 147.99 108090000 181130000 1392100 167610000 135610000 151240000 136720000 103830000 109340000 115760000 137470000 100650000 168960000 9318100 171700000 130130000 154020000 137770000 108320000 113430000 112570000 131740000 21 21 13 21 21 21 21 21 21 21 21 36027000 58306000 489160 54828000 37070000 67300000 43870000 33781000 37342000 39216000 43976000 33548000 54393000 3414700 56365000 35742000 67038000 43941000 36200000 38511000 38076000 42216000 8 8 5 8 8 8 8 8 8 8 8 72060000 122830000 902950 112790000 98544000 83942000 92846000 70050000 71998000 76545000 93493000 67099000 114570000 5903400 115340000 94384000 86981000 93831000 72117000 74920000 74490000 89524000 13 13 8 13 13 13 13 13 13 13 13 18872000000 10489000000 8382900000 18184 345 16704 92146;92147;92148;92149;92150;92151;92152;92153;92154;92155;92156;92157;92158;92159;92160;92161;92162 111444;111445;111446;111447;111448;111449;111450;111451;111452;111453;111454;111455;111456;111457;111458;111459;111460;111461;111462;111463;111464;111465 111457 22 SVNELIYK Unmodified 964.52295 0.52294707 716 P18124 RPL7 60S ribosomal protein L7 yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 52.414 52.582 2 0.0014247 15667 20211116_3433_TMUAki_TMT10x_P_F5 122.13 46.755 21403000 31938000 112580 40037000 31568000 24734000 21781000 21137000 24788000 19451000 29218000 19928000 29832000 1980700 40043000 30027000 26060000 22698000 21622000 25243000 19066000 28048000 3 3 1 3 3 3 3 3 3 3 3 6432900 9664000 0 11837000 18560000 14526000 8747400 7004900 8459600 6567800 9416400 5989600 9025700 695280 11962000 17549000 14464000 9377000 7488600 8652800 6432500 9054100 1 1 0 1 1 1 1 1 1 1 1 14970000 22274000 112580 28200000 13008000 10207000 13034000 14133000 16328000 12883000 19801000 13939000 20806000 1285400 28081000 12478000 11597000 13321000 14133000 16590000 12633000 18994000 2 2 1 2 2 2 2 2 2 2 2 1093600000 335690000 757950000 18185 716 16705 92163;92164;92165 111466;111467;111468 111466 3 SVNELIYKR Unmodified 1120.6241 0.6240581 716 P18124 RPL7 60S ribosomal protein L7 yes yes 0 0 0 1 By MS/MS By MS/MS 5.43 2.87 2 1 2 2 3 4 42.708 42.889 3 2.8974E-05 11210 20211116_3436_TMUAki_TMT10x_P_F8 148.91 98.441 20289000 31332000 148640 32805000 42427000 34190000 22891000 25211000 27431000 21955000 27038000 18892000 29241000 2092900 33383000 40196000 34543000 24382000 25988000 27693000 21576000 26094000 7 7 4 7 7 7 7 7 7 7 7 12216000 18432000 123740 19246000 34475000 26887000 14840000 15479000 16460000 13131000 15981000 11375000 17202000 1408200 19691000 32568000 26663000 16129000 16244000 16658000 12921000 15431000 3 3 2 3 3 3 3 3 3 3 3 8073200 12900000 24894 13559000 7951800 7303100 8051600 9731700 10970000 8823700 11057000 7517000 12039000 684660 13692000 7628200 7880300 8252200 9744800 11036000 8655100 10664000 4 4 2 4 4 4 4 4 4 4 4 1917900000 1276400000 641500000 18186 716 16706 92166;92167;92168;92169;92170;92171;92172 111469;111470;111471;111472;111473;111474;111475 111471 7 SVNESLNNLFITEEDYQALR Unmodified 2354.139 0.13901926 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.76 1.35 4 4 3 4 2 7 10 77.906 77.871 2;3 2.7675E-71 26227 20211116_3442_TMUAki_TMT10x_S_F4 287.48 253.89 43264000 73048000 651530 68167000 45816000 66235000 55408000 44176000 43708000 46674000 53813000 40284000 68143000 3693600 69857000 44177000 67099000 55339000 46103000 45336000 45481000 51598000 15 15 7 15 15 15 15 15 15 15 15 23900000 37661000 343720 34807000 20477000 41104000 26780000 24244000 22888000 23934000 27508000 22253000 35131000 1873000 35804000 19789000 41107000 26714000 25491000 23619000 23388000 26393000 7 7 3 7 7 7 7 7 7 7 7 19364000 35387000 307810 33360000 25339000 25131000 28627000 19931000 20820000 22740000 26305000 18031000 33012000 1820600 34053000 24388000 25993000 28624000 20611000 21717000 22093000 25206000 8 8 4 8 8 8 8 8 8 8 8 26530000000 12110000000 14421000000 18187 1471 16707 92173;92174;92175;92176;92177;92178;92179;92180;92181;92182;92183;92184;92185;92186;92187;92188;92189 111476;111477;111478;111479;111480;111481;111482;111483;111484;111485;111486;111487;111488;111489;111490 111489 15 SVNEVMEWMNNVMNAQAK Unmodified 2093.9333 0.9332657 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 0 By MS/MS 2 0 1 1 81.059 81.044 3 5.7566E-05 26921 20211116_3440_TMUAki_TMT10x_S_F2 78.661 60.744 3835800 5945200 30554 7030800 4521400 3193900 4535300 2271900 2332900 2499800 4043500 3571600 5551600 341430 7038500 4336600 3469700 4531400 2363200 2530400 2432000 3847700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3835800 5945200 30554 7030800 4521400 3193900 4535300 2271900 2332900 2499800 4043500 3571600 5551600 341430 7038500 4336600 3469700 4531400 2363200 2530400 2432000 3847700 2 2 1 2 2 2 2 2 2 2 2 333220000 0 333220000 18188 2345 16708 92190 111491;111492 111491 2 SVNFSLTPNEIK Unmodified 1347.7034 0.70343063 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.806 1 4 4 1 4 6 61.133 61.416 2;3 1.3318E-30 18526 20211116_3445_TMUAki_TMT10x_S_F6 268.91 199.31 72120000 119250000 630010 125950000 103660000 125780000 82933000 97173000 92714000 90187000 99489000 67151000 111290000 6449400 128020000 98875000 127500000 85509000 100030000 94133000 88370000 95763000 14 14 6 14 14 14 14 14 14 14 14 40228000 65120000 512490 68925000 70879000 98597000 56954000 54553000 52593000 49853000 54411000 37458000 60778000 3924200 70489000 67622000 97624000 58364000 57548000 53760000 48883000 52432000 7 7 4 7 7 7 7 7 7 7 7 31892000 54125000 117530 57027000 32781000 27184000 25979000 42620000 40121000 40334000 45078000 29693000 50516000 2525200 57526000 31252000 29881000 27145000 42486000 40374000 39487000 43332000 7 7 2 7 7 7 7 7 7 7 7 9522500000 5032900000 4489600000 18189 1057 16709 92191;92192;92193;92194;92195;92196;92197;92198;92199;92200 111493;111494;111495;111496;111497;111498;111499;111500;111501;111502;111503;111504;111505;111506;111507 111501 15 SVPAFIDISEEDQAAELR Acetyl (Protein N-term) 2030.9797 0.97966507 2056 Q7L2H7 EIF3M Eukaryotic translation initiation factor 3 subunit M yes yes 1 0 0 0 By MS/MS By MS/MS 1.64 0.643 5 5 1 2 9 66.309 66.292 2 1.7756E-70 28329 20211116_3439_TMUAki_TMT10x_S_F1 222.99 198.14 9069700 15266000 119670 14092000 9420800 14513000 10834000 7589300 7902500 8546000 11496000 8445600 14241000 852020 14466000 9075200 14603000 10825000 8094300 8295200 8307100 10979000 13 13 9 13 13 13 13 13 13 13 13 6554200 10793000 58959 10057000 6311500 11548000 7271800 5203400 5464400 5846100 7928400 6103000 10068000 585650 10334000 6078900 11530000 7270000 5629900 5725600 5683200 7572000 4 4 3 4 4 4 4 4 4 4 4 2515500 4473600 60714 4034800 3109300 2964800 3562600 2385900 2438100 2699900 3567700 2342600 4172700 266370 4131200 2996300 3073300 3555200 2464500 2569600 2623900 3406700 9 9 6 9 9 9 9 9 9 9 9 5818700000 3692000000 2126700000 18190 2056 16710 92201;92202;92203;92204;92205;92206;92207;92208;92209;92210;92211 111508;111509;111510;111511;111512;111513;111514;111515;111516;111517;111518;111519;111520;111521;111522;111523 111512 16 SVPDEIILLR Unmodified 1153.6707 0.67067394 2839 Q9H9A6 LRRC40 Leucine-rich repeat-containing protein 40 yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 65.642 65.712 2 0.00031443 19978 20211116_3444_TMUAki_TMT10x_S_F5 113.74 72.165 11760000 20066000 204970 19169000 15933000 23696000 15160000 19332000 18043000 18233000 17672000 10951000 18720000 1188400 19687000 15267000 23763000 15507000 19843000 18216000 17852000 17059000 2 2 1 2 2 2 2 2 2 2 2 6167900 9717200 0 10064000 8769900 16276000 8823700 9448800 9180100 9108600 8453300 5742600 9068500 511730 10335000 8408000 16045000 8958500 9941300 9297800 8910000 8177100 1 1 0 1 1 1 1 1 1 1 1 5592100 10349000 204970 9105600 7162600 7419700 6336700 9883300 8862900 9124000 9219200 5208300 9651800 676640 9351800 6859500 7718100 6548900 9901600 8918600 8942300 8882400 1 1 1 1 1 1 1 1 1 1 1 943000000 594260000 348740000 18191 2839 16711 92212;92213;92214 111524;111525;111526 111526 3 SVPEDDGHALLAER Unmodified 1507.7267 0.72668527 1501 Q02952;Q02952-3;Q02952-2 AKAP12 A-kinase anchor protein 12 yes no 0 0 0 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 37.804 37.706 3 3.078E-33 12131 20211116_3441_TMUAki_TMT10x_S_F3 222.56 192.08 2997800 4805500 24106 5773700 6192900 5545300 3558200 5142600 5566300 3997800 5015900 2791300 4487700 298140 5818300 5872100 5654200 3809200 5214700 5555300 3951600 4855700 6 6 3 6 6 6 6 6 6 6 6 1478900 2488200 0 2869000 5060200 4222100 2402500 2685500 2890600 2017200 2566400 1376900 2323100 158180 2920100 4784200 4183200 2591000 2788000 2907800 1997700 2485800 2 2 0 2 2 2 2 2 2 2 2 1518900 2317400 24106 2904800 1132700 1323200 1155700 2457100 2675700 1980500 2449500 1414400 2164600 139960 2898200 1087900 1471000 1218100 2426700 2647500 1953900 2369900 4 4 3 4 4 4 4 4 4 4 4 965820000 716330000 249490000 18192 1501 16712 92215;92216;92217;92218;92219 111527;111528;111529;111530;111531;111532 111532 6 SVPGTTLESFRR Unmodified 1348.7099 0.709913 2189 Q8N1W1;Q8N1W1-5;Q8N1W1-4;Q8N1W1-3;Q8N1W1-6 ARHGEF28 Rho guanine nucleotide exchange factor 28 yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 38.571 38.871 3 5.5423E-06 9549 20211116_3436_TMUAki_TMT10x_P_F8 110.58 86.238 1085000 1678400 5482.1 1664700 1378000 1366000 1125200 876450 840030 814960 1250700 1010200 1566100 97364 1694800 1315200 1399000 1145800 913970 881640 798470 1193800 2 2 1 2 2 2 2 2 2 2 2 609680 911750 0 862470 959180 1019500 652130 461720 439370 459920 656030 567660 850580 53641 885690 911870 1016400 670950 497540 463980 449260 626150 1 1 0 1 1 1 1 1 1 1 1 475280 766630 5482.1 802270 418850 346450 473090 414720 400660 355040 594700 442570 715480 43723 809110 403310 382590 474800 416430 417660 349210 567680 1 1 1 1 1 1 1 1 1 1 1 36937000 16706000 20231000 18193 2189 16713 92220;92221 111533;111534 111533 2 SVPHEEYR Unmodified 1015.4723 0.47230849 3065 Q9P2K5;Q9P2K5-2 MYEF2 Myelin expression factor 2 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 26.772 26.506 3 0.0019215 7855 20211116_3441_TMUAki_TMT10x_S_F3 96.027 91.243 227470 407540 928.3 334410 264460 270710 279970 189230 236890 215460 371050 211780 380000 17221 345360 253820 277880 281840 197290 247640 209350 353780 2 2 1 2 2 2 2 2 2 2 2 57535 111430 928.3 99778 87871 128790 74606 68379 81924 78149 78670 53578 103930 6060.1 103050 83977 128060 76596 72864 82908 75922 75991 1 1 1 1 1 1 1 1 1 1 1 169940 296110 0 234630 176590 141910 205370 120850 154970 137310 292380 158200 276070 11161 242320 169850 149820 205250 124430 164740 133430 277790 1 1 0 1 1 1 1 1 1 1 1 4770100 1753800 3016300 18194 3065 16714 92222;92223 111535;111536 111536 2 SVPLAATSMLITQGLISK Oxidation (M) 1845.0281 0.028135591 2998 Q9NX40;Q9NX40-3;Q9NX40-2;Q9NX40-4 OCIAD1 OCIA domain-containing protein 1 yes no 0 0 1 0 By MS/MS By MS/MS 3.67 0.471 2 4 3 3 78.376 78.343 2;3 1.738E-17 26048 20211116_3431_TMUAki_TMT10x_P_F4 148.56 124.27 17447000 29115000 131990 26260000 20114000 30068000 23035000 22329000 22131000 22808000 24709000 16245000 27157000 1552100 27049000 19364000 30223000 23185000 23108000 22646000 22256000 23756000 5 5 2 5 5 5 5 5 5 5 5 9266500 15399000 131990 12949000 8551700 18087000 10366000 11174000 10947000 11307000 12961000 8628700 14360000 843580 13460000 8250900 17953000 10438000 11714000 11183000 11037000 12441000 3 3 2 3 3 3 3 3 3 3 3 8180500 13716000 0 13311000 11562000 11982000 12669000 11155000 11184000 11502000 11748000 7616700 12797000 708520 13588000 11113000 12270000 12747000 11394000 11463000 11219000 11315000 2 2 0 2 2 2 2 2 2 2 2 7056300000 3683200000 3373100000 18195 2998 16715 92224;92225;92226;92227;92228;92229 111537;111538;111539;111540;111541 111539 3066 5 SVPLAATSMLITQGLISK Unmodified 1829.0332 0.033220969 2998 Q9NX40;Q9NX40-3;Q9NX40-2;Q9NX40-4 OCIAD1 OCIA domain-containing protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 79.766 79.767 3 4.0333E-24 26007 20211116_3445_TMUAki_TMT10x_S_F6 175.26 155.42 6897200 11308000 64498 12188000 8748700 5855800 9091300 2609900 2131900 3178000 6903600 6422400 10555000 657860 12277000 8401200 6283100 8988400 2834400 2642700 3080400 6511900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6897200 11308000 64498 12188000 8748700 5855800 9091300 2609900 2131900 3178000 6903600 6422400 10555000 657860 12277000 8401200 6283100 8988400 2834400 2642700 3080400 6511900 2 2 2 2 2 2 2 2 2 2 2 2079800000 0 2079800000 18196 2998 16715 92230;92231;92232 111542;111543;111544 111544 3 SVPNQPSTNEILQAVLK Unmodified 1836.9945 0.99452728 1953 Q5VYK3 ECM29 Proteasome-associated protein ECM29 homolog yes yes 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 77.001 77.01 3 4.6767E-06 25158 20211116_3436_TMUAki_TMT10x_P_F8 98.227 84.548 4873500 7544700 110180 6305500 4428300 8462000 5259400 4357200 4387300 5073200 4998700 4538600 7035400 500500 6552500 4273700 8395200 5264400 4658700 4523200 4925200 4803100 1 1 1 1 1 1 1 1 1 1 1 4873500 7544700 110180 6305500 4428300 8462000 5259400 4357200 4387300 5073200 4998700 4538600 7035400 500500 6552500 4273700 8395200 5264400 4658700 4523200 4925200 4803100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 675650000 675650000 0 18197 1953 16716 92233;92234 111545;111546 111546 2 SVPTSTVFYPSDGVATEK Unmodified 1883.9153 0.9152739 853 P29401;P29401-2 TKT Transketolase yes no 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 58.797 58.903 3 1.7763E-17 17479 20211116_3445_TMUAki_TMT10x_S_F6 148.41 128.67 23513000 41470000 248730 42459000 30287000 42633000 27065000 36113000 35063000 33549000 35791000 21893000 38699000 2104700 43248000 28963000 43274000 27869000 36970000 35347000 32871000 34504000 10 10 6 10 10 10 10 10 10 10 10 13780000 23583000 164550 22945000 21670000 33616000 19059000 20437000 20642000 19156000 19795000 12831000 22003000 1339500 23612000 20718000 33291000 19518000 21406000 20900000 18761000 19121000 6 6 3 6 6 6 6 6 6 6 6 9732400 17887000 84182 19514000 8616300 9017200 8006200 15676000 14422000 14393000 15996000 9061600 16697000 765190 19636000 8244700 9983200 8351500 15564000 14447000 14109000 15382000 4 4 3 4 4 4 4 4 4 4 4 3724800000 2296700000 1428100000 18198 853 16717 92235;92236;92237;92238;92239 111547;111548;111549;111550;111551;111552;111553;111554;111555;111556 111556 10 SVPTWLK Unmodified 829.46979 0.46978929 1347 P62277 RPS13 40S ribosomal protein S13 yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 55.912 55.786 2 0.0035399 17936 20211116_3429_TMUAki_TMT10x_P_F2 117.93 43.191 40564000 62871000 293950 82429000 82597000 60524000 49229000 29005000 28805000 30183000 52467000 37771000 58738000 4120700 82383000 78370000 62301000 51047000 31116000 31038000 29430000 49880000 5 5 3 5 5 5 5 5 5 5 5 24414000 36191000 13614 46787000 71934000 51039000 37077000 17622000 17716000 18470000 30385000 22731000 33810000 2597300 47046000 68091000 50982000 38832000 19629000 19320000 18004000 28919000 3 3 1 3 3 3 3 3 3 3 3 16150000 26680000 280340 35642000 10663000 9485100 12151000 11383000 11089000 11714000 22082000 15039000 24929000 1523400 35337000 10279000 11319000 12215000 11488000 11718000 11426000 20961000 2 2 2 2 2 2 2 2 2 2 2 2291800000 1819300000 472500000 18199 1347 16718 92240;92241;92242;92243;92244;92245 111557;111558;111559;111560;111561;111562 111558 6 SVPVTPARPPPHNK Unmodified 1495.8259 0.82594581 2591 Q99618 CDCA3 Cell division cycle-associated protein 3 yes yes 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 29.418 29.367 4 6.6883E-14 5745 20211116_3428_TMUAki_TMT10x_P_F1 150.22 131.8 566140 943150 0 899660 709310 898580 645310 477990 580060 516650 667300 527100 879900 44765 920850 678240 906030 655890 508370 596070 503000 641020 3 3 0 3 3 3 3 3 3 3 3 484920 796400 0 763410 604360 806410 531020 403810 479510 434810 547490 451490 743000 39026 781780 577460 809820 540880 431810 492490 423380 526040 2 2 0 2 2 2 2 2 2 2 2 81216 146750 0 136250 104950 92169 114290 74181 100550 81842 119810 75610 136890 5739.2 139080 100780 96210 115020 76560 103580 79616 114980 1 1 0 1 1 1 1 1 1 1 1 29353000 20484000 8868700 18200 2591 16719 92246;92247;92248 111563;111564;111565 111563 3 SVQLYGPTNFAPVINHVAR Unmodified 2082.1011 0.10105803 2130 Q86YQ8;Q86YQ8-2 CPNE8 Copine-8 yes no 0 0 0 0 By MS/MS 3 0 1 1 61.877 61.442 3 1.7902E-05 21811 20211116_3441_TMUAki_TMT10x_S_F3 83.849 59.057 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18201 2130 16720 92249 111566 111566 1 SVQPTSEERIPK Unmodified 1369.7201 0.72014333 3118 Q9UHD8-5;Q9UHD8;Q9UHD8-2;Q9UHD8-7;Q9UHD8-3;Q9UHD8-4;Q9UHD8-9;Q9UHD8-8 SEPT9 Septin-9 yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 33.255 33.241 3 6.662E-08 7710 20211116_3431_TMUAki_TMT10x_P_F4 138.02 108.48 695240 1109900 18313 1171900 1904900 1298900 948490 719860 887480 655560 883460 647480 1035900 91648 1193100 1803500 1302400 1010200 759210 905390 642910 852370 1 1 1 1 1 1 1 1 1 1 1 695240 1109900 18313 1171900 1904900 1298900 948490 719860 887480 655560 883460 647480 1035900 91648 1193100 1803500 1302400 1010200 759210 905390 642910 852370 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 81028000 81028000 0 18202 3118 16721 92250;92251 111567 111567 1 SVQQTVELLTR Unmodified 1272.7038 0.70376498 2836 Q9H944;Q9H944-2 MED20 Mediator of RNA polymerase II transcription subunit 20 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 3 2 1 60.728 61.44 2 6.1626E-15 20500 20211116_3446_TMUAki_TMT10x_S_F7 172.17 126.02 6215800 10513000 60351 11166000 8876200 13060000 8364300 7455000 7291400 6836300 8805000 5788000 9812500 608840 11373000 8501700 13062000 8477800 7844100 7518400 6702200 8447000 1 1 1 1 1 1 1 1 1 1 1 6215800 10513000 60351 11166000 8876200 13060000 8364300 7455000 7291400 6836300 8805000 5788000 9812500 608840 11373000 8501700 13062000 8477800 7844100 7518400 6702200 8447000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 553890000 553890000 0 18203 2836 16722 92252;92253;92254 111568;111569;111570 111570 3 SVQTFADK Unmodified 894.4447 0.44469675 1063 P47756-2 CAPZB F-actin-capping protein subunit beta yes yes 0 0 0 0 By MS/MS 4 0 1 1 39.861 39.912 2 0.1073 10344 20211116_3431_TMUAki_TMT10x_P_F4 56.632 28.75 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18204 1063 16723 92255 111571 111571 1 SVREDGVFNISVDNTCSLFR Unmodified 2314.1012 0.10119397 1128 P49915;P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 67.951 68.198 3 3.096E-18 22909 20211116_3435_TMUAki_TMT10x_P_F7 150.65 140.6 7392800 13136000 0 10118000 8159200 20336000 11442000 13934000 11486000 11583000 11976000 6882300 12246000 486300 10688000 7897100 19943000 11436000 14420000 11700000 11410000 11538000 3 3 0 3 3 3 3 3 3 3 3 7392800 13136000 0 10118000 8159200 20336000 11442000 13934000 11486000 11583000 11976000 6882300 12246000 486300 10688000 7897100 19943000 11436000 14420000 11700000 11410000 11538000 3 3 0 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1638200000 1638200000 0 18205 1128 16724 92256;92257 111572;111573;111574 111574 3 SVSAFAPICNPVLCPWGK Unmodified 2001.9805 0.98047389 612 P10768 ESD S-formylglutathione hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 4.38 0.696 1 3 4 5 3 78.473 78.465 2;3 1.4209E-08 26349 20211116_3433_TMUAki_TMT10x_P_F5 115.5 104.55 15305000 24690000 228270 22600000 17672000 25015000 19822000 11295000 13518000 13562000 18219000 14252000 23031000 1514800 23240000 17013000 25026000 19799000 12244000 14195000 13152000 17430000 4 4 4 4 4 4 4 4 4 4 4 12293000 18786000 191440 17080000 13413000 21611000 15797000 8140800 10699000 10322000 14245000 11448000 17523000 1213300 17612000 12932000 21434000 15741000 9022100 11234000 9990700 13632000 3 3 3 3 3 3 3 3 3 3 3 3011800 5904300 36836 5520500 4259400 3403200 4025000 3153700 2818400 3240800 3974000 2804500 5507900 301500 5627200 4080500 3591900 4057600 3221700 2961000 3161600 3797800 1 1 1 1 1 1 1 1 1 1 1 9150600000 5402900000 3747700000 18206 612 16725 92258;92259;92260;92261;92262;92263;92264;92265 111575;111576;111577;111578;111579 111577 5 SVSDQFYR Unmodified 1000.4614 0.46140945 1231 P55010 EIF5 Eukaryotic translation initiation factor 5 yes yes 0 0 0 0 By MS/MS 4 0 1 1 35.549 35.656 2 0.0038732 8905 20211116_3442_TMUAki_TMT10x_S_F4 99.755 65.677 93867 159150 2045 194210 106730 92429 107540 125040 171540 114820 161420 87415 148630 9868.3 194130 102480 101170 111020 125180 171350 112560 156030 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 93867 159150 2045 194210 106730 92429 107540 125040 171540 114820 161420 87415 148630 9868.3 194130 102480 101170 111020 125180 171350 112560 156030 1 1 1 1 1 1 1 1 1 1 1 9293300 0 9293300 18207 1231 16726 92266 111580 111580 1 SVSGTDVQEECREK Unmodified 1622.7206 0.72061362 1091 P49321;P49321-3;P49321-4 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 1 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 30.988 30.828 3 9.8185E-30 9366 20211116_3441_TMUAki_TMT10x_S_F3 210.34 157.33 557300 972610 2922.3 880540 685600 759780 614710 397790 438370 428010 639520 518930 907200 50725 902990 655780 773320 621770 423620 460820 416770 610690 2 2 2 2 2 2 2 2 2 2 2 283250 459470 469.21 436670 380390 531250 291130 251040 246700 278730 333970 263740 428650 25281 448500 362520 529070 298600 270210 256020 271090 319470 1 1 1 1 1 1 1 1 1 1 1 274050 513140 2453.1 443870 305210 228530 323580 146750 191670 149270 305550 255190 478550 25443 454490 293260 244260 323170 153400 204800 145680 291230 1 1 1 1 1 1 1 1 1 1 1 88532000 40754000 47778000 18208 1091 16727 92267;92268;92269 111581;111582 111582 2 SVSLTGAPESVQK Unmodified 1301.6827 0.68269519 2380 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 0 0 By MS/MS 6 0 1 1 44.881 45.046 3 0.00010203 11836 20211116_3445_TMUAki_TMT10x_S_F6 90.793 64.195 1452100 2476500 0 2623800 1473300 1359800 1331100 1893800 2311800 1889800 2183900 1352000 2311400 118180 2647400 1408900 1475200 1388000 1898500 2304400 1845900 2110700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1452100 2476500 0 2623800 1473300 1359800 1331100 1893800 2311800 1889800 2183900 1352000 2311400 118180 2647400 1408900 1475200 1388000 1898500 2304400 1845900 2110700 1 1 0 1 1 1 1 1 1 1 1 47391000 0 47391000 18209 2380 16728 92270 111583 111583 1 SVSSNVASVSPIPAGSK Unmodified 1585.8312 0.83115034 3350 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 47.943 47.851 3 1.884E-11 13349 20211116_3436_TMUAki_TMT10x_P_F8 125.45 109.33 1131500 2047400 30129 2534500 978390 957890 864220 1750500 1992500 1505200 1774300 1053700 1912300 119740 2527600 937080 1090900 917510 1732400 1969900 1480200 1718300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1131500 2047400 30129 2534500 978390 957890 864220 1750500 1992500 1505200 1774300 1053700 1912300 119740 2527600 937080 1090900 917510 1732400 1969900 1480200 1718300 1 1 1 1 1 1 1 1 1 1 1 256810000 0 256810000 18210 3350 16729 92271;92272;92273 111584;111585;111586 111585 3 SVTAFFK Unmodified 798.42759 0.42759012 1511 Q04637;Q04637-3;Q04637-8;Q04637-5;Q04637-4;Q04637-9;Q04637-6;Q04637-7 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 58.51 58.273 2 0.019111 17687 20211116_3440_TMUAki_TMT10x_S_F2 88.942 38.903 19444000 30553000 12875 31020000 24051000 24672000 20901000 22486000 21035000 20747000 23307000 18104000 28511000 1688300 31517000 22983000 25476000 21369000 22920000 21474000 20335000 22413000 2 2 1 2 2 2 2 2 2 2 2 8313700 12446000 12875 12184000 13389000 15424000 10981000 9386600 8112900 8481500 9244900 7741000 11613000 772340 12497000 12778000 15377000 11175000 9821200 8419200 8320800 8883200 1 1 1 1 1 1 1 1 1 1 1 11130000 18106000 0 18836000 10662000 9247800 9919900 13099000 12922000 12266000 14062000 10363000 16898000 915960 19021000 10205000 10099000 10194000 13099000 13055000 12014000 13530000 1 1 0 1 1 1 1 1 1 1 1 531630000 171470000 360160000 18211 1511 16730 92274;92275 111587;111588 111588 2 SVTDSIRDEYAFLQK Unmodified 1770.8788 0.87882882 87 O00429;O00429-2;O00429-4;O00429-3;O00429-5;O00429-9;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 1 By MS/MS By MS/MS 5.43 1.18 2 2 1 2 4 3 65.11 65.306 3 3.8955E-36 19694 20211116_3434_TMUAki_TMT10x_P_F6 205.52 174.69 82421000 134180000 1623200 145220000 101010000 123640000 89779000 101580000 102650000 102840000 109060000 76754000 125250000 8595900 147040000 96669000 126800000 92052000 104430000 104090000 100390000 105010000 9 9 8 9 9 9 9 9 9 9 9 35876000 57191000 774160 61895000 49327000 77843000 44959000 43449000 44397000 44628000 46684000 33410000 53383000 3884300 63049000 47234000 77545000 45815000 45947000 45273000 43537000 44963000 4 4 4 4 4 4 4 4 4 4 4 46544000 76993000 849040 83322000 51685000 45801000 44820000 58132000 58254000 58217000 62379000 43344000 71867000 4711600 83995000 49436000 49251000 46237000 58485000 58822000 56854000 60047000 5 5 4 5 5 5 5 5 5 5 5 4069300000 1732400000 2336900000 18212 87 16731 92276;92277;92278;92279;92280;92281;92282 111589;111590;111591;111592;111593;111594;111595;111596;111597;111598 111592 10 SVTDYAQQNPAAQIPAR Unmodified 1828.9068 0.9067749 3180 Q9UM54-6 MYO6 Unconventional myosin-VI yes yes 0 0 0 0 By matching By MS/MS 6 0 2 1 1 46.572 46.696 3 1.221E-05 12483 20211116_3445_TMUAki_TMT10x_S_F6 91.699 83.204 867390 1508200 2963 1786300 665450 831280 648800 1571700 1742000 1419300 1477000 807640 1408400 71846 1788400 637820 922400 692820 1556100 1715000 1392400 1433100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 867390 1508200 2963 1786300 665450 831280 648800 1571700 1742000 1419300 1477000 807640 1408400 71846 1788400 637820 922400 692820 1556100 1715000 1392400 1433100 1 1 1 1 1 1 1 1 1 1 1 185560000 99201000 86358000 18213 3180 16732 92283;92284 111599 111599 1 SVTEQGAELSNEER Unmodified 1547.7063 0.70634376 1395 P63104 YWHAZ 14-3-3 protein zeta/delta yes yes 0 0 0 0 By MS/MS By MS/MS 2 1.25 4 3 1 1 4 5 33.587 33.525 2;3 2.6964E-199 8957 20211116_3429_TMUAki_TMT10x_P_F2 463.04 398.2 3534400 5900700 7450.6 5888900 12836000 6598800 4243600 4092800 5892600 3458100 6199500 3290500 5506000 373380 6019100 12089000 6622300 4804800 4268700 5933400 3403500 5970900 9 9 3 9 9 9 9 9 9 9 9 2195600 3500000 1743.2 3138800 11356000 5568100 2626700 2472500 3743800 2156800 3905300 2044100 3264500 287490 3263900 10668000 5453000 3155400 2660600 3765500 2119400 3762300 4 4 1 4 4 4 4 4 4 4 4 1338800 2400700 5707.3 2750100 1479500 1030700 1617000 1620300 2148800 1301300 2294100 1246400 2241400 85893 2755200 1421200 1169300 1649400 1608100 2167900 1284000 2208600 5 5 2 5 5 5 5 5 5 5 5 1531100000 1087900000 443190000 18214 1395 16733 92285;92286;92287;92288;92289;92290;92291;92292;92293 111600;111601;111602;111603;111604;111605;111606;111607;111608;111609 111603 10 SVTEQGAELSNEERNLLSVAYK Unmodified 2436.2132 0.21324684 1395 P63104 YWHAZ 14-3-3 protein zeta/delta yes yes 0 0 0 1 By MS/MS 4 0 1 1 69.063 68.884 3 6.9398E-68 22601 20211116_3442_TMUAki_TMT10x_S_F4 240.41 223.91 4324300 7593100 74317 6597900 12317000 5192500 4718100 8643500 7649800 6268800 6955200 4026900 7081400 539710 6780200 11623000 5454000 5273900 8542800 7629400 6220300 6730900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4324300 7593100 74317 6597900 12317000 5192500 4718100 8643500 7649800 6268800 6955200 4026900 7081400 539710 6780200 11623000 5454000 5273900 8542800 7629400 6220300 6730900 2 2 2 2 2 2 2 2 2 2 2 447600000 0 447600000 18215 1395 16734 92294 111610;111611 111610 2 SVTLGYLFSQGHLTR Unmodified 1677.8839 0.88385462 1242 P55265;P55265-5;P55265-4;P55265-3;P55265-2 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 62.864 62.972 3 2.2831E-14 18846 20211116_3444_TMUAki_TMT10x_S_F5 127.66 111.85 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18216 1242 16735 92295;92296 111612;111613 111613 2 SVTLLIK Unmodified 772.50584 0.50584045 982 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 57.405 57.211 2 0.0015841 19017 20211116_3439_TMUAki_TMT10x_S_F1 148.07 37.705 47037000 65888000 68136 76623000 54992000 61363000 49169000 42948000 41765000 45498000 53271000 43795000 61521000 3807300 77181000 52569000 63040000 49950000 44673000 43221000 44330000 51033000 5 5 2 5 5 5 5 5 5 5 5 25760000 35374000 68136 41611000 37510000 42941000 26661000 24490000 23458000 25489000 29229000 23986000 33031000 2346400 42029000 35696000 43248000 27512000 25861000 24209000 24852000 28017000 3 3 2 3 3 3 3 3 3 3 3 21277000 30514000 0 35012000 17482000 18422000 22508000 18458000 18307000 20009000 24043000 19809000 28490000 1460900 35152000 16873000 19791000 22438000 18812000 19012000 19478000 23016000 2 2 0 2 2 2 2 2 2 2 2 3415700000 1821100000 1594700000 18217 982 16736 92297;92298;92299;92300 111614;111615;111616;111617;111618 111617 5 SVTSREEVDVR Unmodified 1275.6419 0.64189301 637 P12081;P12081-4;P12081-3;P12081-2 HARS Histidine--tRNA ligase, cytoplasmic yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 28.811 28.557 3 1.6899E-05 8510 20211116_3441_TMUAki_TMT10x_S_F3 103.46 71.527 900660 1334900 4752.4 1256500 1224400 1376500 1023900 844570 842500 810190 1086100 838610 1245300 80346 1289200 1169100 1383000 1043500 884520 873680 792690 1040200 3 3 2 3 3 3 3 3 3 3 3 693710 994870 2493.9 925340 992120 1157300 794060 647940 646580 602080 797340 645900 928060 60729 952380 946250 1153200 811240 683110 669590 589910 764500 2 2 1 2 2 2 2 2 2 2 2 206950 340060 2258.5 331170 232310 219280 229850 196640 195920 208110 288780 192710 317270 19617 336800 222820 229780 232230 201410 204090 202780 275700 1 1 1 1 1 1 1 1 1 1 1 23968000 15740000 8227900 18218 637 16737 92301;92302 111619 111619 1 SVTWISAGLAEAGHLEGHCLVR Unmodified 2362.1852 0.18519837 2247 Q8NEZ5;Q8NEZ5-3 FBXO22 F-box only protein 22 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 68.321 68.482 4 1.243E-26 21170 20211116_3447_TMUAki_TMT10x_S_F8 167.16 152.39 2435200 4994000 106240 3849200 3430500 4768400 3578800 3411400 3243800 3329400 3750900 2268200 4655600 314840 4021400 3299400 4770600 3612000 3534500 3332600 3255000 3602600 2 2 2 2 2 2 2 2 2 2 2 1345900 2637400 69896 2010600 1761300 3354300 2090700 1991800 1861900 1873900 2187700 1253700 2458700 182540 2115500 1701300 3303600 2096400 2090400 1915800 1835000 2100300 1 1 1 1 1 1 1 1 1 1 1 1089200 2356500 36342 1838600 1669200 1414200 1488100 1419500 1381900 1455500 1563200 1014500 2197000 132300 1905900 1598200 1467000 1515600 1444100 1416900 1420000 1502300 1 1 1 1 1 1 1 1 1 1 1 1303600000 918090000 385480000 18219 2247 16738 92303;92304;92305 111620;111621 111621 2 SVVAPEHVK Unmodified 964.53418 0.53418046 78 O00267;O00267-2 SUPT5H Transcription elongation factor SPT5 yes no 0 0 0 0 By MS/MS 4 0 1 1 31.64 31.67 3 0.028856 7049 20211116_3431_TMUAki_TMT10x_P_F4 50.034 31.697 1125000 1814700 24048 1556400 1531100 1823900 1266600 871730 861520 821590 1301600 1047600 1692400 121370 1610000 1462900 1820200 1286100 932870 909790 804470 1242000 1 1 1 1 1 1 1 1 1 1 1 1125000 1814700 24048 1556400 1531100 1823900 1266600 871730 861520 821590 1301600 1047600 1692400 121370 1610000 1462900 1820200 1286100 932870 909790 804470 1242000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 52018000 52018000 0 18220 78 16739 92306 111622 111622 1 SVVAPPGAPK Unmodified 921.52837 0.5283668 681 P15170-3;P15170-2;P15170 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 0 0 0 0 By MS/MS 6.8 0.748 2 2 1 5 36.983 37.272 2;3 8.3057E-05 10202 20211116_3435_TMUAki_TMT10x_P_F7 126.41 107.68 2500000 3998700 142360 4188000 4003700 4817900 3106600 2393800 2421500 2389900 3111000 2328800 3732000 356580 4268500 3824700 4814800 3176900 2556100 2517900 2334300 2979700 6 6 4 6 6 6 6 6 6 6 6 2500000 3998700 142360 4188000 4003700 4817900 3106600 2393800 2421500 2389900 3111000 2328800 3732000 356580 4268500 3824700 4814800 3176900 2556100 2517900 2334300 2979700 6 6 4 6 6 6 6 6 6 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 128070000 128070000 0 18221 681 16740 92307;92308;92309;92310;92311 111623;111624;111625;111626;111627;111628;111629 111625 7 SVVAPPGAPKK Unmodified 1049.6233 0.62332982 681 P15170-3;P15170-2;P15170 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 0 0 0 1 By MS/MS By MS/MS 1 0 3 1 2 35.382 35.359 3 3.38E-05 10047 20211116_3439_TMUAki_TMT10x_S_F1 97.734 80.221 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18222 681 16741 92312;92313;92314 111630;111631;111632 111631 3 SVVCSDVEQQVIVIEEEKK Unmodified 2217.1199 0.11986372 2049 Q7L014 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 0 0 0 1 By MS/MS By MS/MS 2.25 0.968 2 3 2 1 3 5 69.813 69.632 3;4 1.0351E-30 22272 20211116_3440_TMUAki_TMT10x_S_F2 166.76 159.06 33964000 59249000 364860 49316000 40941000 64249000 42612000 44663000 42766000 46610000 48228000 31625000 55248000 3046100 51235000 39307000 64091000 43141000 46457000 43694000 45441000 46355000 13 13 5 13 13 13 13 13 13 13 13 21151000 35672000 232530 30083000 24239000 47376000 27470000 26832000 26358000 28021000 28144000 19694000 33265000 1833600 31343000 23326000 46735000 27661000 28354000 26927000 27318000 27094000 8 8 3 8 8 8 8 8 8 8 8 12813000 23577000 132330 19233000 16702000 16873000 15142000 17831000 16408000 18589000 20084000 11931000 21983000 1212500 19892000 15981000 17356000 15480000 18104000 16768000 18124000 19260000 5 5 2 5 5 5 5 5 5 5 5 4271100000 2151400000 2119600000 18223 2049 16742 92315;92316;92317;92318;92319;92320;92321;92322 111633;111634;111635;111636;111637;111638;111639;111640;111641;111642;111643;111644;111645;111646;111647;111648 111646 16 SVVLMSHLGRPDGVPMPDK Unmodified 2034.0391 0.039051403 473 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 54.577 54.429 4 1.8271E-17 17963 20211116_3439_TMUAki_TMT10x_S_F1 147.53 29.008 10839000 15409000 243720 24215000 11414000 11218000 10091000 8509700 8274900 8209900 11847000 10094000 14412000 1133800 23887000 10926000 12169000 10249000 8779800 8624500 8030600 11318000 4 4 4 4 4 4 4 4 4 4 4 6596800 8806800 194230 14808000 7943900 8404900 6524600 4629000 4330600 4133400 6870600 6143700 8240100 746800 14587000 7593100 8872500 6624400 4882100 4591800 4057300 6549100 2 2 2 2 2 2 2 2 2 2 2 4242400 6602600 49499 9407000 3469900 2812900 3566700 3880700 3944200 4076500 4976900 3950500 6171400 387040 9300000 3332600 3296300 3624500 3897600 4032700 3973200 4769100 2 2 2 2 2 2 2 2 2 2 2 1262600000 590960000 671620000 18224 473 16744 92323;92324 111649;111650;111651;111652 111651 4 SVVLMSHLGRPDGVPMPDK 2 Oxidation (M) 2066.0289 0.028880647 473 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 2 1 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 42.651 42.929 4 5.5617E-05 10704 20211116_3447_TMUAki_TMT10x_S_F8 77.031 60.151 4702700 7350100 114480 9753700 8333800 7641000 5096500 5212400 6221400 5115000 6524500 4379600 6867400 547430 9749100 7916400 7859900 5373700 5419200 6290800 4999600 6284600 4 4 4 4 4 4 4 4 4 4 4 3165900 4590500 68362 6212100 7006400 6492300 3984500 3232700 4120400 3305500 4263900 2948300 4289500 379980 6227000 6646300 6523400 4203800 3453500 4191000 3225300 4108800 2 2 2 2 2 2 2 2 2 2 2 1536800 2759600 46115 3541700 1327400 1148700 1112100 1979600 2101000 1809500 2260600 1431300 2578000 167460 3522100 1270100 1336500 1169900 1965700 2099800 1774200 2175800 2 2 2 2 2 2 2 2 2 2 2 456050000 287950000 168110000 18225 473 16744 92325;92326;92327 111653;111654;111655;111656 111656 367;368 4 SVVLMSHLGRPDGVPMPDK Oxidation (M) 2050.034 0.033966025 473 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 1 1 By MS/MS By MS/MS 7.67 0.471 2 4 3 3 48.325 48.51 4 1.2011E-07 13213 20211116_3447_TMUAki_TMT10x_S_F8 101.92 28.813 28781000 40980000 277990 56968000 39145000 39147000 29448000 25928000 23261000 22026000 33828000 26797000 38299000 2468800 56721000 37286000 40683000 30186000 26913000 24310000 21673000 32306000 8 8 5 8 8 8 8 8 8 8 8 19769000 27141000 87988 38770000 31830000 32984000 22213000 17922000 15431000 14421000 23169000 18405000 25369000 1568400 38644000 30263000 33620000 22825000 18877000 16270000 14229000 22111000 5 5 2 5 5 5 5 5 5 5 5 9011900 13840000 190000 18198000 7314500 6163500 7234600 8006800 7829400 7604700 10659000 8392300 12930000 900440 18077000 7023000 7062700 7360900 8035700 8039400 7443700 10194000 3 3 3 3 3 3 3 3 3 3 3 4734900000 2666600000 2068400000 18226 473 16744 92328;92329;92330;92331;92332;92333 111657;111658;111659;111660;111661;111662;111663;111664 111664 367;368 8 SVVLMSHLGRPDGVPMPDKYSLEPVAVELK 2 Oxidation (M) 3294.6992 0.69922024 473 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 2 2 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 63.069 63.246 5 1.6647E-06 20644 20211116_3435_TMUAki_TMT10x_P_F7 73.616 60.296 64266000 124290000 1117000 84534000 96548000 176970000 96644000 166250000 182760000 159730000 119980000 59845000 115820000 4309700 90429000 92630000 174340000 100690000 169380000 179940000 156270000 117680000 10 10 4 10 10 10 10 10 10 10 10 35309000 63841000 519110 45391000 41370000 111140000 50854000 83039000 88548000 78326000 58345000 32879000 59502000 2407400 48592000 39926000 108530000 52255000 85705000 87361000 76692000 57218000 5 5 2 5 5 5 5 5 5 5 5 28957000 60445000 597930 39144000 55178000 65829000 45789000 83215000 94217000 81406000 61637000 26966000 56322000 1902300 41837000 52704000 65807000 48436000 83676000 92575000 79580000 60467000 5 5 2 5 5 5 5 5 5 5 5 20004000000 11557000000 8446900000 18227 473 16745 92334;92335;92336;92337;92338;92339 111665;111666;111667;111668;111669;111670;111671;111672;111673;111674 111667 367;368 10 SVVLMSHLGRPDGVPMPDKYSLEPVAVELK Oxidation (M) 3278.7043 0.70430562 473 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 1 2 By MS/MS By MS/MS 4.15 3.28 6 1 2 4 5 8 67.911 67.901 5;6 6.8225E-27 21516 20211116_3428_TMUAki_TMT10x_P_F1 150.48 133.95 96375000 164460000 1455700 132010000 128260000 159470000 136110000 86138000 71393000 100360000 120350000 89739000 153340000 8948700 137370000 123220000 159120000 135650000 91706000 77199000 97432000 114580000 20 20 13 20 20 20 20 20 20 20 20 49786000 82786000 689770 66405000 56541000 100500000 72413000 42448000 33855000 49585000 58885000 46357000 77187000 4400600 69411000 54625000 98977000 71428000 46302000 37017000 48133000 56029000 8 8 4 8 8 8 8 8 8 8 8 46589000 81676000 765900 65602000 71722000 58971000 63697000 43690000 37538000 50776000 61460000 43382000 76152000 4548200 67961000 68590000 60142000 64221000 45405000 40182000 49299000 58548000 12 12 9 12 12 12 12 12 12 12 12 19749000000 9923700000 9825100000 18228 473 16745 92340;92341;92342;92343;92344;92345;92346;92347;92348;92349;92350;92351;92352 111675;111676;111677;111678;111679;111680;111681;111682;111683;111684;111685;111686;111687;111688;111689;111690;111691;111692;111693 111677 367;368 19 SVVLMSHLGRPDGVPMPDKYSLEPVAVELK Unmodified 3262.7094 0.70939099 473 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 2 By MS/MS By MS/MS 2.8 2.64 2 2 1 3 2 72.441 72.357 5 6.6683E-47 23454 20211116_3440_TMUAki_TMT10x_S_F2 199.03 175.46 43061000 74488000 581260 63503000 52039000 52432000 63103000 18892000 15694000 23391000 47032000 40096000 69464000 3976900 65394000 50194000 53343000 61962000 21035000 19152000 22660000 44400000 7 7 5 7 7 7 7 7 7 7 7 31843000 54394000 458830 45859000 35382000 42981000 47521000 14737000 12123000 17709000 34150000 29650000 50723000 2856500 47344000 34242000 43329000 46472000 16498000 14664000 17173000 32262000 5 5 3 5 5 5 5 5 5 5 5 11218000 20094000 122430 17644000 16657000 9450500 15581000 4155400 3570500 5682200 12882000 10446000 18741000 1120300 18050000 15952000 10014000 15489000 4537900 4488400 5486600 12138000 2 2 2 2 2 2 2 2 2 2 2 7506600000 4430800000 3075800000 18229 473 16745 92353;92354;92355;92356;92357 111694;111695;111696;111697;111698;111699;111700 111700 7 SVVLQLADGQIFK Unmodified 1416.7977 0.79766537 407 O95163 IKBKAP Elongator complex protein 1 yes yes 0 0 0 0 By MS/MS 8 0 1 1 77.543 77.549 2 0.0010016 25395 20211116_3436_TMUAki_TMT10x_P_F8 78.342 58.555 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18230 407 16746 92358 111701 111701 1 SVVPGGGAVEAALSIYLENYATSMGSR Oxidation (M) 2714.3221 0.32214536 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 1 0 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 81.529 81.517 3 0.0015807 28357 20211116_3429_TMUAki_TMT10x_P_F2 55.852 41.96 7136000 11274000 0 11349000 7540300 11358000 8225600 4459300 4522600 5520800 8533000 6643300 10520000 171010 11573000 7239000 11415000 8193100 4913800 4905300 5348200 8107300 3 3 0 3 3 3 3 3 3 3 3 6596500 10506000 0 10420000 6945400 10868000 7584300 4092200 4123000 5081200 7876600 6141100 9803300 143890 10643000 6668600 10892000 7552500 4532200 4479100 4921800 7482100 2 2 0 2 2 2 2 2 2 2 2 539490 767870 0 929490 594960 489740 641280 367080 399550 439640 656350 502170 717110 27113 930240 570450 523280 640570 381580 426160 426390 625210 1 1 0 1 1 1 1 1 1 1 1 2535700000 2368900000 166720000 18231 712 16747 92359;92360;92361 111702;111703;111704 111703 814 3 SVVPGGGAVEAALSIYLENYATSMGSR Unmodified 2698.3272 0.32723074 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 82.451 82.436 3 2.5554E-25 28734 20211116_3429_TMUAki_TMT10x_P_F2 157.56 142.63 1402600 2101700 21596 2452900 1539200 2085300 1553700 988600 898270 1068200 1708300 1306100 1962400 101900 2472100 1477400 2122400 1554900 1062900 971260 1040000 1622900 3 3 1 3 3 3 3 3 3 3 3 1185400 1774300 21596 2045700 1197800 1793700 1263500 783550 657470 867320 1356600 1103900 1656600 84091 2064000 1151500 1820200 1259400 850150 720190 843610 1287000 2 2 1 2 2 2 2 2 2 2 2 217150 327420 0 407250 341370 291600 290150 205050 240800 200910 351780 202170 305820 17805 408100 325900 302250 295460 212730 251070 196390 335920 1 1 0 1 1 1 1 1 1 1 1 361150000 306960000 54191000 18232 712 16747 92362;92363 111705;111706;111707 111706 3 SVVSDLEADDVK Unmodified 1275.6194 0.61942623 625 P11388;P11388-2;P11388-3;P11388-4 TOP2A DNA topoisomerase 2-alpha yes no 0 0 0 0 By MS/MS 2 0 1 1 54.621 54.426 3 0.0021335 16115 20211116_3440_TMUAki_TMT10x_S_F2 67.252 45.379 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18233 625 16748 92364 111708 111708 1 SVVSQSVCDYFFEAQEK Unmodified 2021.9041 0.90405729 3249 Q9Y2T2 AP3M1 AP-3 complex subunit mu-1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 1 3 75.486 75.506 3 1.0389E-15 23963 20211116_3444_TMUAki_TMT10x_S_F5 152.37 134.01 4194700 6831300 164710 6591000 4406000 5842000 4923300 3920000 3847400 4266000 5462100 3906900 6373400 504230 6729700 4247700 5954400 4933500 4092900 4018400 4152100 5219100 2 2 2 2 2 2 2 2 2 2 2 2237600 3571000 100250 3470800 1882200 3901700 2546900 2089300 2007000 2354200 2916900 2084200 3331800 273970 3554300 1827500 3907500 2531900 2223700 2097700 2288300 2785700 1 1 1 1 1 1 1 1 1 1 1 1957000 3260300 64457 3120200 2523800 1940300 2376400 1830700 1840400 1911800 2545200 1822700 3041600 230260 3175400 2420200 2046900 2401600 1869300 1920800 1863800 2433500 1 1 1 1 1 1 1 1 1 1 1 782800000 410780000 372020000 18234 3249 16749 92365;92366;92367;92368 111709;111710;111711;111712 111710 4 SVVTSIFGVK Unmodified 1035.5964 0.59644637 1002 P41252 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.707 2 4 2 4 4 68.315 68.044 2;3 1.8814E-12 22203 20211116_3442_TMUAki_TMT10x_S_F4 188.66 153.56 63136000 98389000 891030 100080000 75774000 107910000 78610000 79216000 76582000 81727000 85969000 58789000 91814000 5852000 102090000 72756000 108800000 79526000 82064000 78331000 79716000 82641000 10 10 5 10 10 10 10 10 10 10 10 36507000 54758000 218800 55065000 46445000 78736000 48365000 47287000 45072000 47381000 48305000 33991000 51096000 3096700 56508000 44578000 78044000 48856000 49668000 46112000 46271000 46498000 5 5 2 5 5 5 5 5 5 5 5 26629000 43631000 672230 45010000 29329000 29171000 30245000 31929000 31510000 34346000 37664000 24798000 40718000 2755300 45583000 28178000 30757000 30670000 32396000 32219000 33445000 36143000 5 5 3 5 5 5 5 5 5 5 5 4399200000 2587900000 1811300000 18235 1002 16750 92369;92370;92371;92372;92373;92374;92375;92376 111713;111714;111715;111716;111717;111718;111719;111720;111721;111722;111723;111724 111724 12 SVYENDVLEQLK Unmodified 1435.7195 0.71947463 2529 Q96P16;Q96P16-3 RPRD1A Regulation of nuclear pre-mRNA domain-containing protein 1A yes no 0 0 0 0 By MS/MS 4 0 1 1 65.809 65.902 3 0.00031746 20896 20211116_3431_TMUAki_TMT10x_P_F4 82.543 59.167 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18236 2529 16751 92377 111725 111725 1 SVYFKPSLTPSGEFRK Unmodified 1841.9676 0.96758424 1121 P49790;P49790-2;P49790-3 NUP153 Nuclear pore complex protein Nup153 yes no 0 0 0 2 By MS/MS By MS/MS 4 0.707 1 2 1 3 1 51.974 52.054 4 1.1529E-28 15685 20211116_3442_TMUAki_TMT10x_S_F4 183.36 151.47 15608000 25253000 114650 29099000 23978000 27866000 17349000 20467000 22331000 20338000 21650000 14533000 23579000 1445500 29396000 22827000 28298000 18099000 21179000 22476000 19869000 20906000 4 4 2 4 4 4 4 4 4 4 4 10066000 16010000 114650 18965000 18775000 23627000 12932000 13770000 14716000 13311000 14537000 9373300 14950000 1034700 19209000 17860000 23561000 13478000 14484000 14886000 13019000 14029000 3 3 2 3 3 3 3 3 3 3 3 5541500 9243400 0 10134000 5203400 4238800 4417100 6697500 7615400 7026800 7113400 5159400 8628400 410770 10187000 4966600 4737100 4620600 6695400 7589600 6849200 6877600 1 1 0 1 1 1 1 1 1 1 1 2943900000 2146900000 796910000 18237 1121 16752 92378;92379;92380;92381 111726;111727;111728;111729 111729 4 SVYGGEFIQQLK Unmodified 1367.7085 0.70851601 2905 Q9NQG5 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B yes yes 0 0 0 0 By MS/MS By MS/MS 7.25 0.661 1 4 3 3 5 64.314 64.636 2;3 5.889E-31 21797 20211116_3446_TMUAki_TMT10x_S_F7 273.44 196.98 30952000 52149000 53006 50905000 40677000 52127000 36480000 45528000 43065000 43524000 42864000 28818000 48656000 2539200 52038000 38887000 52880000 37427000 46563000 43516000 42590000 41356000 7 7 2 7 7 7 7 7 7 7 7 15625000 26290000 5913.6 26417000 21908000 37003000 21151000 23945000 22320000 22954000 22103000 14548000 24531000 1356000 27099000 20986000 36750000 21530000 24975000 22648000 22459000 21329000 3 3 1 3 3 3 3 3 3 3 3 15327000 25859000 47092 24488000 18769000 15125000 15329000 21583000 20745000 20570000 20761000 14270000 24125000 1183200 24939000 17901000 16131000 15897000 21588000 20868000 20131000 20027000 4 4 1 4 4 4 4 4 4 4 4 5398700000 2981900000 2416800000 18238 2905 16753 92382;92383;92384;92385;92386;92387;92388;92389 111730;111731;111732;111733;111734;111735;111736;111737 111734 8 SVYQLLSENPPDGER Unmodified 1702.8162 0.81622856 2462 Q96FV9 THOC1 THO complex subunit 1 yes yes 0 0 0 0 By MS/MS By matching 4 0 2 1 1 61.009 61.005 3 0.10397 18932 20211116_3431_TMUAki_TMT10x_P_F4 24.594 10.931 5367600 8196600 0 8818200 7412800 11166000 6886800 5508500 5604400 5196700 6506100 4997300 7650600 407470 8987200 7090200 11103000 6973400 5876800 5789700 5088200 6248200 1 1 0 1 1 1 1 1 1 1 1 5367600 8196600 0 8818200 7412800 11166000 6886800 5508500 5604400 5196700 6506100 4997300 7650600 407470 8987200 7090200 11103000 6973400 5876800 5789700 5088200 6248200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 776470000 455520000 320950000 18239 2462 16754 92390;92391 111738 111738 1 SVYSWDIVVQR Unmodified 1350.6932 0.6932003 185 O15371;O15371-2;O15371-3 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 63.758 64.191 2 1.3648E-18 21090 20211116_3435_TMUAki_TMT10x_P_F7 223.36 188.21 20308000 34647000 342090 34098000 24788000 33124000 25920000 17100000 14666000 17580000 24667000 18911000 32328000 2047000 34810000 23816000 33445000 25884000 18209000 15768000 17150000 23486000 4 4 3 4 4 4 4 4 4 4 4 15500000 26458000 194200 26027000 19327000 28720000 21432000 12106000 10538000 13021000 18182000 14433000 24686000 1501400 26622000 18595000 28718000 21292000 13174000 11468000 12680000 17302000 3 3 2 3 3 3 3 3 3 3 3 4808400 8189900 147890 8070900 5460900 4404500 4488100 4994100 4128700 4558200 6485900 4478200 7641600 545620 8187300 5220600 4726400 4592200 5034900 4299600 4469800 6183700 1 1 1 1 1 1 1 1 1 1 1 2112400000 1612000000 500340000 18240 185 16755 92392;92393;92394;92395 111739;111740;111741;111742;111743 111739 5 SWCPDCVQAEPVVR Unmodified 1701.7603 0.76031036 2633 Q9BRA2 TXNDC17 Thioredoxin domain-containing protein 17 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 3 1 2 50.683 50.809 2;3 4.703E-33 14725 20211116_3431_TMUAki_TMT10x_P_F4 229.29 207.25 8597400 15279000 40966 18102000 11187000 9548800 9272600 8351900 7689700 7696400 11809000 8004800 14268000 716030 18140000 10677000 10228000 9456700 8532400 8038400 7543700 11264000 5 5 2 5 5 5 5 5 5 5 5 2481700 4116700 21608 5115800 5170100 4950600 4390100 1546200 1453000 1748300 3110600 2310700 3845100 250210 5145900 4938200 4977000 4402900 1749900 1665500 1699100 2949400 2 2 1 2 2 2 2 2 2 2 2 6115700 11163000 19358 12987000 6017400 4598200 4882500 6805700 6236700 5948100 8698400 5694000 10423000 465820 12994000 5738600 5251400 5053800 6782500 6372800 5844600 8314800 3 3 1 3 3 3 3 3 3 3 3 857800000 305830000 551960000 18241 2633 16756 92396;92397;92398 111744;111745;111746;111747;111748 111744 5 SWCQEELSVAVKR Unmodified 1590.7824 0.78242601 2350 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 1 By MS/MS 6 0 1 1 49.64 49.74 3 0.093648 13342 20211116_3434_TMUAki_TMT10x_P_F6 36.469 16.891 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18242 2350 16757 92399 111749 111749 1 SWDTNLIECNLDQELK Unmodified 1976.915 0.91495633 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 1.11 2 1 2 1 2 4 77.599 77.566 3 2.0974E-05 28271 20211116_3441_TMUAki_TMT10x_S_F3 91.657 69.825 11518000 18653000 112160 18423000 12468000 19055000 15289000 9072900 8198600 9464100 13754000 10725000 17404000 1011000 18820000 12028000 19148000 15142000 9740100 8848100 9227000 13096000 3 3 2 3 3 3 3 3 3 3 3 8440500 13572000 73259 13427000 8586200 16502000 11457000 6511000 6085400 7047400 10141000 7859000 12663000 708350 13754000 8305500 16397000 11305000 7140200 6569800 6860800 9657300 2 2 1 2 2 2 2 2 2 2 2 3077500 5081200 38906 4995600 3881300 2553000 3832200 2561800 2113300 2416600 3613200 2865700 4741000 302660 5065900 3722700 2751700 3836500 2599900 2278300 2366200 3439100 1 1 1 1 1 1 1 1 1 1 1 4163800000 1485700000 2678100000 18243 1057 16758 92400;92401;92402;92403;92404;92405 111750;111751;111752 111752 3 SWDVETATELLLSN Unmodified 1576.7621 0.76206772 1293 P61086;P61086-3;P61086-2 UBE2K Ubiquitin-conjugating enzyme E2 K yes no 0 0 0 0 By MS/MS By MS/MS 2.67 1.25 1 2 2 1 3 3 82.86 82.847 2 1.3996E-19 30352 20211116_3441_TMUAki_TMT10x_S_F3 178.22 153.38 5100400 8485600 106870 8455000 5925900 7930000 5965600 5291000 4738700 5403300 6786700 4749600 7917900 505710 8619800 5687600 8051600 6011100 5516100 4947100 5272500 6483500 7 7 5 7 7 7 7 7 7 7 7 3499600 5667300 76512 5837700 3815900 6112500 3882200 3571400 3134900 3515600 4508700 3258900 5288800 351850 5947500 3664300 6152900 3911200 3757700 3270600 3435800 4306900 4 4 3 4 4 4 4 4 4 4 4 1600900 2818300 30356 2617200 2110000 1817500 2083400 1719600 1603800 1887700 2278000 1490700 2629000 153860 2672300 2023400 1898700 2099800 1758300 1676500 1836700 2176600 3 3 2 3 3 3 3 3 3 3 3 1127400000 668590000 458820000 18244 1293 16759 92406;92407;92408;92409;92410;92411 111753;111754;111755;111756;111757;111758;111759 111758 7 SWEEQMIEVGRK Oxidation (M) 1506.7137 0.71367774 1464 Q00059;Q00059-2 TFAM Transcription factor A, mitochondrial yes no 0 0 1 1 By MS/MS By MS/MS 4.4 0.49 3 2 3 2 42.153 42.293 3 0.00079124 11324 20211116_3431_TMUAki_TMT10x_P_F4 74.611 61.41 2190800 3284200 5841.9 4500500 1930000 1420400 1599000 2326700 2454700 2226900 3057700 2039900 3069000 183420 4459200 1842600 1657300 1665700 2316900 2481100 2179000 2931000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2190800 3284200 5841.9 4500500 1930000 1420400 1599000 2326700 2454700 2226900 3057700 2039900 3069000 183420 4459200 1842600 1657300 1665700 2316900 2481100 2179000 2931000 2 2 2 2 2 2 2 2 2 2 2 214440000 114160000 100280000 18245 1464 16760 92412;92413;92414;92415;92416 111760;111761;111762;111763 111760 1966 4 SWEEQMIEVGRK Unmodified 1490.7188 0.71876312 1464 Q00059;Q00059-2 TFAM Transcription factor A, mitochondrial yes no 0 0 0 1 By MS/MS 5 0 1 1 54.182 54.382 3 2.5969E-06 16347 20211116_3433_TMUAki_TMT10x_P_F5 116.9 93.226 7757400 11856000 54356 14799000 11702000 11526000 9868100 5371400 4990700 5350600 8765500 7223300 11074000 749040 14840000 11177000 11806000 9954600 5771300 5424600 5226600 8338900 2 2 2 2 2 2 2 2 2 2 2 7757400 11856000 54356 14799000 11702000 11526000 9868100 5371400 4990700 5350600 8765500 7223300 11074000 749040 14840000 11177000 11806000 9954600 5771300 5424600 5226600 8338900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 295140000 295140000 0 18246 1464 16760 92417 111764;111765 111764 2 SWLFGINK Acetyl (Protein N-term) 1005.5284 0.5283668 2973 Q9NVI7;Q9NVI7-2 ATAD3A ATPase family AAA domain-containing protein 3A yes no 1 0 0 0 By matching By MS/MS 2 0 2 1 1 81.51 81.499 2 0.040102 27118 20211116_3440_TMUAki_TMT10x_S_F2 43.027 22.745 1740800 2934500 0 2748900 2301500 1770200 2340500 1428200 1381400 1596000 2121600 1620600 2737500 122680 2802800 2205800 1856000 2342400 1474400 1473600 1551800 2023800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1740800 2934500 0 2748900 2301500 1770200 2340500 1428200 1381400 1596000 2121600 1620600 2737500 122680 2802800 2205800 1856000 2342400 1474400 1473600 1551800 2023800 1 1 0 1 1 1 1 1 1 1 1 192280000 107520000 84765000 18247 2973 16761 92418;92419 111766 111766 1 SWLFPLTK Acetyl (Protein N-term) 1032.5644 0.56441796 2245 Q8NEZ2;Q8NEZ2-3;Q8NEZ2-2 VPS37A Vacuolar protein sorting-associated protein 37A yes no 1 0 0 0 By MS/MS By MS/MS 4.75 2.77 2 1 1 2 2 82.669 82.669 2 0.0017534 27538 20211116_3440_TMUAki_TMT10x_S_F2 67.981 36.691 3558300 5476800 14311 5524100 4246900 4259300 4283700 2090100 2152300 2504500 3938400 3313000 5110600 163820 5613200 4072200 4368400 4277200 2246900 2346200 2429000 3743900 3 3 1 3 3 3 3 3 3 3 3 1888800 2845200 14311 2911100 2256600 2721300 2251100 1210700 1130600 1375900 2208200 1758800 2655100 47790 2962300 2164500 2750000 2249000 1312100 1237500 1337000 2096800 2 2 1 2 2 2 2 2 2 2 2 1669500 2631700 0 2613000 1990300 1538100 2032500 879410 1021700 1128600 1730200 1554300 2455500 116030 2650900 1907700 1618400 2028200 934820 1108800 1092000 1647100 1 1 0 1 1 1 1 1 1 1 1 356340000 208490000 147850000 18248 2245 16762 92420;92421;92422;92423 111767;111768;111769 111769 3 SWLPQNCTLVDMK Oxidation (M) 1606.7483 0.74834869 767 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 1 0 By MS/MS By MS/MS 7.33 0.471 4 2 3 3 61.559 61.993 2;3 0.00046385 20174 20211116_3435_TMUAki_TMT10x_P_F7 88.803 67.932 28049000 50168000 411170 52085000 38305000 45026000 36246000 32376000 27543000 32697000 38432000 26119000 46819000 2849100 52894000 36701000 46020000 36604000 33566000 28788000 31920000 36737000 7 7 6 7 7 7 7 7 7 7 7 12413000 21219000 217950 22474000 21094000 29750000 20626000 14605000 12343000 14205000 16220000 11560000 19805000 1353900 22947000 20227000 29518000 20689000 15601000 13057000 13890000 15527000 3 3 3 3 3 3 3 3 3 3 3 15635000 28949000 193220 29611000 17210000 15275000 15620000 17771000 15200000 18492000 22212000 14559000 27015000 1495200 29947000 16474000 16502000 15914000 17964000 15731000 18031000 21210000 4 4 3 4 4 4 4 4 4 4 4 4967700000 2777800000 2189900000 18249 767 16763 92424;92425;92426;92427;92428;92429 111770;111771;111772;111773;111774;111775;111776 111771 891 7 SWLPQNCTLVDMK Unmodified 1590.7534 0.75343407 767 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 3 3 3 3 69.931 70.024 2;3 3.0405E-12 23658 20211116_3435_TMUAki_TMT10x_P_F7 132.32 127.43 33083000 54566000 384650 58411000 41860000 47624000 42342000 27440000 21994000 26086000 39605000 30807000 50931000 3224200 59156000 40172000 48728000 42294000 28878000 23890000 25533000 37660000 6 6 6 6 6 6 6 6 6 6 6 22769000 36648000 324420 38543000 29246000 40436000 32043000 20442000 16727000 19477000 26884000 21202000 34204000 2280700 39215000 28132000 40628000 31882000 21764000 18048000 19062000 25620000 4 4 4 4 4 4 4 4 4 4 4 10314000 17918000 60231 19867000 12614000 7188100 10299000 6998100 5266700 6609900 12721000 9604200 16727000 943480 19941000 12040000 8100600 10412000 7113100 5842600 6471500 12040000 2 2 2 2 2 2 2 2 2 2 2 3072900000 1605600000 1467300000 18250 767 16763 92430;92431;92432;92433;92434;92435 111777;111778;111779;111780;111781;111782;111783 111780 7 SYCAEIAHNVSSK Unmodified 1464.6667 0.66672755 1382 P62910 RPL32 60S ribosomal protein L32 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 3 1 34.393 34.448 3 1.2759E-14 8657 20211116_3444_TMUAki_TMT10x_S_F5 160.52 138.97 7837700 10652000 170660 16257000 22024000 15950000 7102600 8255200 8267300 7313200 9414900 7298900 9960400 1005900 16184000 20753000 16095000 8020800 8753500 8400300 7181300 9046700 6 6 5 6 6 6 6 6 6 6 6 6577300 8710000 167130 13145000 20983000 15144000 6207400 6745400 6816700 6238800 7472300 6125400 8144000 901180 13127000 19758000 15116000 7087900 7267000 6931400 6114000 7187900 5 5 4 5 5 5 5 5 5 5 5 1260400 1941900 3527.6 3111700 1041000 806480 895220 1509800 1450600 1074400 1942600 1173600 1816400 104710 3057300 994750 979580 932870 1486500 1468900 1067300 1858800 1 1 1 1 1 1 1 1 1 1 1 2133400000 1857000000 276420000 18251 1382 16764 92436;92437;92438;92439 111784;111785;111786;111787;111788;111789 111789 6 SYDVPPPPMEPDHPFYSNISK Oxidation (M) 2432.0995 0.099462633 722 P18669;Q8N0Y7 PGAM1;PGAM4 Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4 yes no 0 0 1 0 By MS/MS By MS/MS 5.6 1.08 3 4 4 4 8 7 55.634 55.91 3;4 3.9024E-19 15757 20211116_3434_TMUAki_TMT10x_P_F6 141.31 126.9 117040000 207510000 1718400 206720000 156450000 218570000 132070000 168010000 171200000 165750000 157610000 108990000 193630000 11494000 211130000 149480000 220800000 136450000 173300000 171970000 161970000 152460000 27 27 19 27 27 27 27 27 27 27 27 69685000 120030000 1148700 119840000 105800000 169350000 93358000 93560000 97795000 93621000 90393000 64890000 112000000 7072300 123010000 101190000 167760000 95485000 98952000 99033000 91433000 87428000 16 16 12 16 16 16 16 16 16 16 16 47359000 87486000 569730 86889000 50652000 49224000 38711000 74446000 73404000 72126000 67213000 44100000 81632000 4421800 88120000 48296000 53036000 40964000 74349000 72938000 70538000 65029000 11 11 7 11 11 11 11 11 11 11 11 24057000000 13735000000 10322000000 18252 722 16765 92440;92441;92442;92443;92444;92445;92446;92447;92448;92449;92450;92451;92452;92453;92454 111790;111791;111792;111793;111794;111795;111796;111797;111798;111799;111800;111801;111802;111803;111804;111805;111806;111807;111808;111809;111810;111811;111812;111813;111814;111815;111816;111817 111798 830 28 SYDVPPPPMEPDHPFYSNISK Unmodified 2416.1045 0.10454801 722 P18669;Q8N0Y7 PGAM1;PGAM4 Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4 yes no 0 0 0 0 By MS/MS By MS/MS 6.09 0.793 3 4 4 6 5 61.01 61.275 3;4 2.6748E-14 18401 20211116_3445_TMUAki_TMT10x_S_F6 134.9 117.82 104250000 170060000 852060 188720000 112860000 129850000 113550000 69969000 62576000 74099000 108370000 97066000 158760000 9059200 190330000 108250000 134570000 113560000 74286000 67516000 72199000 103120000 22 22 12 22 22 22 22 22 22 22 22 60133000 98054000 635440 106380000 67456000 97913000 74006000 42755000 38028000 43898000 62398000 55993000 91526000 5444100 107810000 64867000 99030000 73611000 46289000 41126000 42826000 59439000 13 13 8 13 13 13 13 13 13 13 13 44113000 72010000 216630 82346000 45404000 31941000 39542000 27214000 24548000 30201000 45972000 41073000 67232000 3615100 82523000 43384000 35542000 39951000 27997000 26390000 29373000 43684000 9 9 4 9 9 9 9 9 9 9 9 10446000000 5942400000 4503400000 18253 722 16765 92455;92456;92457;92458;92459;92460;92461;92462;92463;92464;92465 111818;111819;111820;111821;111822;111823;111824;111825;111826;111827;111828;111829;111830;111831;111832;111833;111834;111835;111836;111837;111838;111839 111836 22 SYDYDLIIIGGGSGGLAAAK Unmodified 1939.9891 0.98910755 1871 Q16881;Q16881-3;Q16881-4;Q16881-5;Q16881-2;Q16881-6 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 6.17 0.687 1 3 2 2 4 77.718 77.687 3 6.0094E-09 25173 20211116_3445_TMUAki_TMT10x_S_F6 104.03 92.971 7428100 12941000 56070 11085000 9795100 12979000 9827100 9281100 10009000 10067000 9795000 6916700 12069000 701250 11468000 9396200 13022000 9972000 9646500 10167000 9800000 9455500 2 2 2 2 2 2 2 2 2 2 2 3267800 5930600 5644.4 5520300 3693000 7312000 3911000 3817600 4531100 4466300 4610000 3042700 5532400 282140 5687400 3546800 7259900 3974900 4077200 4585300 4335300 4444600 1 1 1 1 1 1 1 1 1 1 1 4160300 7010800 50426 5564600 6102100 5666700 5916100 5463500 5478300 5601100 5185100 3874000 6536500 419110 5780500 5849400 5762000 5997100 5569300 5582000 5464700 5010900 1 1 1 1 1 1 1 1 1 1 1 2043500000 799470000 1244000000 18254 1871 16766 92466;92467;92468;92469;92470;92471 111840;111841;111842;111843;111844;111845 111842 6 SYEALVQHVIEDHER Unmodified 1823.8802 0.8802258 2792 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein yes yes 0 0 0 0 By MS/MS By MS/MS 3 1.41 2 2 2 1 3 4 57.892 57.784 4 4.9768E-30 20347 20211116_3441_TMUAki_TMT10x_S_F3 207.4 182.47 13550000 19907000 660550 27345000 13242000 16401000 13870000 9890600 9810900 9517500 14026000 12621000 18603000 1670200 27208000 12748000 17237000 13910000 10373000 10308000 9310700 13400000 8 8 6 8 8 8 8 8 8 8 8 5661800 8311200 113830 10058000 7724000 11147000 6770300 5875000 6193100 5735600 6530500 5272200 7761800 555420 10154000 7385800 11170000 6899400 6235100 6337600 5607400 6289300 4 4 3 4 4 4 4 4 4 4 4 7888600 11595000 546720 17287000 5517700 5254300 7099600 4015600 3617900 3782000 7495200 7349000 10841000 1114800 17054000 5362500 6067100 7010900 4138300 3970500 3703300 7110300 4 4 3 4 4 4 4 4 4 4 4 2745700000 1472200000 1273500000 18255 2792 16767 92472;92473;92474;92475;92476;92477;92478 111846;111847;111848;111849;111850;111851;111852;111853 111850 8 SYEAQDPEIASLSGK Unmodified 1593.7522 0.75223132 2592 Q99622 C12orf57 Protein C10 yes yes 0 0 0 0 By MS/MS 3 0 1 1 53.844 53.464 3 0.0056433 18547 20211116_3441_TMUAki_TMT10x_S_F3 58.09 24.409 1543100 2602300 16403 3206000 1421700 1411400 1140700 1962300 1844400 1857900 2265200 1436900 2430500 141520 3201200 1357100 1560900 1193500 1964200 1860500 1818900 2172200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1543100 2602300 16403 3206000 1421700 1411400 1140700 1962300 1844400 1857900 2265200 1436900 2430500 141520 3201200 1357100 1560900 1193500 1964200 1860500 1818900 2172200 1 1 1 1 1 1 1 1 1 1 1 131070000 0 131070000 18256 2592 16768 92479 111854 111854 1 SYEECIIESR Unmodified 1284.5656 0.56561652 630 P11717 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 43.04 42.956 2 7.5809E-05 11323 20211116_3440_TMUAki_TMT10x_S_F2 127.76 104.41 3518800 5290400 40437 7438300 9173700 7646300 4521700 4446700 4892400 3821200 5311700 3276500 4944500 387790 7439700 8680300 7704800 4841300 4663900 4975800 3757800 5111100 5 5 3 5 5 5 5 5 5 5 5 2834000 4261000 38458 5938000 8689200 7207000 4168900 3511300 3955500 3076100 4219200 2638800 3982300 331980 5958300 8218900 7180700 4458500 3743500 4042700 3022200 4062000 4 4 2 4 4 4 4 4 4 4 4 684850 1029300 1978.7 1500200 484480 439360 352830 935430 936910 745140 1092500 637680 962240 55816 1481400 461360 524170 382850 920350 933110 735580 1049100 1 1 1 1 1 1 1 1 1 1 1 175120000 126420000 48694000 18257 630 16769 92480;92481;92482 111855;111856;111857 111857 3 SYELPDGQVITIGNER Unmodified 1789.8846 0.88464248 1276;1406;1414;1911 P60709;Q6S8J3;A5A3E0;Q9BYX7;P63261;P68133;P68032;P62736;P63267;P63267-2;Q562R1 ACTB;POTEE;POTEF;POTEKP;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2 no no 0 0 0 0 By MS/MS By MS/MS 4.08 1.36 4 16 56 75 30 23 14 110 108 61.901 61.893 2;3 1.0324E-107 928 20211116_3441_TMUAki_TMT10x_S_F3 365.6 333.19 734940000 1223800000 7171200 1177500000 801120000 1083000000 829230000 710420000 684190000 756410000 903500000 684240000 1141700000 52923000 1203100000 768430000 1100800000 835160000 742490000 710170000 736860000 864780000 251 251 122 252 251 251 250 251 251 251 252 348140000 580150000 1565500 538630000 352450000 651890000 409390000 330620000 316960000 360880000 413210000 324120000 541190000 23568000 554120000 339120000 649900000 409420000 353270000 329910000 351210000 395630000 115 115 54 116 115 115 114 115 115 115 116 386800000 643610000 5605700 638850000 448680000 431160000 419840000 379800000 367230000 395530000 490290000 360120000 600540000 29355000 648960000 429310000 450890000 425740000 389220000 380260000 385650000 469150000 136 136 68 136 136 136 136 136 136 136 136 592490000000 308370000000 284130000000 18258 1276;1406;1414;1911 16770 92483;92484;92485;92486;92487;92488;92489;92490;92491;92492;92493;92494;92495;92496;92497;92498;92499;92500;92501;92502;92503;92504;92505;92506;92507;92508;92509;92510;92511;92512;92513;92514;92515;92516;92517;92518;92519;92520;92521;92522;92523;92524;92525;92526;92527;92528;92529;92530;92531;92532;92533;92534;92535;92536;92537;92538;92539;92540;92541;92542;92543;92544;92545;92546;92547;92548;92549;92550;92551;92552;92553;92554;92555;92556;92557;92558;92559;92560;92561;92562;92563;92564;92565;92566;92567;92568;92569;92570;92571;92572;92573;92574;92575;92576;92577;92578;92579;92580;92581;92582;92583;92584;92585;92586;92587;92588;92589;92590;92591;92592;92593;92594;92595;92596;92597;92598;92599;92600;92601;92602;92603;92604;92605;92606;92607;92608;92609;92610;92611;92612;92613;92614;92615;92616;92617;92618;92619;92620;92621;92622;92623;92624;92625;92626;92627;92628;92629;92630;92631;92632;92633;92634;92635;92636;92637;92638;92639;92640;92641;92642;92643;92644;92645;92646;92647;92648;92649;92650;92651;92652;92653;92654;92655;92656;92657;92658;92659;92660;92661;92662;92663;92664;92665;92666;92667;92668;92669;92670;92671;92672;92673;92674;92675;92676;92677;92678;92679;92680;92681;92682;92683;92684;92685;92686;92687;92688;92689;92690;92691;92692;92693;92694;92695;92696;92697;92698;92699;92700 111858;111859;111860;111861;111862;111863;111864;111865;111866;111867;111868;111869;111870;111871;111872;111873;111874;111875;111876;111877;111878;111879;111880;111881;111882;111883;111884;111885;111886;111887;111888;111889;111890;111891;111892;111893;111894;111895;111896;111897;111898;111899;111900;111901;111902;111903;111904;111905;111906;111907;111908;111909;111910;111911;111912;111913;111914;111915;111916;111917;111918;111919;111920;111921;111922;111923;111924;111925;111926;111927;111928;111929;111930;111931;111932;111933;111934;111935;111936;111937;111938;111939;111940;111941;111942;111943;111944;111945;111946;111947;111948;111949;111950;111951;111952;111953;111954;111955;111956;111957;111958;111959;111960;111961;111962;111963;111964;111965;111966;111967;111968;111969;111970;111971;111972;111973;111974;111975;111976;111977;111978;111979;111980;111981;111982;111983;111984;111985;111986;111987;111988;111989;111990;111991;111992;111993;111994;111995;111996;111997;111998;111999;112000;112001;112002;112003;112004;112005;112006;112007;112008;112009;112010;112011;112012;112013;112014;112015;112016;112017;112018;112019;112020;112021;112022;112023;112024;112025;112026;112027;112028;112029;112030;112031;112032;112033;112034;112035;112036;112037;112038;112039;112040;112041;112042;112043;112044;112045;112046;112047;112048;112049;112050;112051;112052;112053;112054;112055;112056;112057;112058;112059;112060;112061;112062;112063;112064;112065;112066;112067;112068;112069;112070;112071;112072;112073;112074;112075;112076;112077;112078;112079;112080;112081;112082;112083;112084;112085;112086;112087;112088;112089;112090;112091;112092;112093;112094;112095;112096;112097;112098;112099;112100;112101;112102;112103;112104;112105;112106;112107;112108;112109;112110;112111;112112;112113;112114;112115;112116;112117;112118;112119;112120;112121;112122;112123;112124;112125;112126;112127;112128;112129;112130;112131;112132;112133;112134;112135;112136;112137;112138;112139;112140;112141;112142;112143;112144;112145;112146;112147;112148;112149;112150;112151;112152;112153 112018 296 SYELQESNVR Unmodified 1223.5782 0.57823012 2965 Q9NVA2;Q9NVA2-2 SEPT11 Septin-11 yes no 0 0 0 0 By MS/MS 1.5 0.5 1 1 2 34.822 34.711 2 4.1213E-11 9389 20211116_3429_TMUAki_TMT10x_P_F2 210.93 107.13 325250 534430 0 584250 1346000 651800 434950 347310 444920 284110 536100 302820 498870 38180 593520 1267500 653000 489140 366600 455430 280080 514340 1 1 0 1 1 1 1 1 1 1 1 325250 534430 0 584250 1346000 651800 434950 347310 444920 284110 536100 302820 498870 38180 593520 1267500 653000 489140 366600 455430 280080 514340 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 70205000 70205000 0 18259 2965 16771 92701;92702 112154 112154 1 SYEPLEDPGVK Unmodified 1232.5925 0.5924832 966 P37837 TALDO1 Transaldolase yes yes 0 0 0 0 By MS/MS 3 0 1 1 48.556 48.507 2 9.8333E-12 15404 20211116_3430_TMUAki_TMT10x_P_F3 141.25 121.11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18260 966 16772 92703 112155 112155 1 SYESQIEVMAAEVAK Unmodified 1653.792 0.79198764 423 O95347;O95347-2 SMC2 Structural maintenance of chromosomes protein 2 yes no 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 75.373 75.25 3 0.0097659 25792 20211116_3429_TMUAki_TMT10x_P_F2 53.395 33.299 3922300 5708000 0 4661800 2940200 4654400 3827900 2514900 2405800 2583400 4658300 3652100 5322300 310030 4829600 2841500 4694000 3792300 2667000 2589700 2520200 4424000 1 1 0 1 1 1 1 1 1 1 1 3922300 5708000 0 4661800 2940200 4654400 3827900 2514900 2405800 2583400 4658300 3652100 5322300 310030 4829600 2841500 4694000 3792300 2667000 2589700 2520200 4424000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 425210000 425210000 0 18261 423 16773 92704;92705 112156 112156 1 SYESQIEVMAAEVAK Oxidation (M) 1669.7869 0.78690227 423 O95347;O95347-2 SMC2 Structural maintenance of chromosomes protein 2 yes no 0 0 1 0 By MS/MS 4 0 1 1 58.785 58.691 3 0.010493 18462 20211116_3442_TMUAki_TMT10x_S_F4 52.453 32.072 1931500 3526500 38607 3352800 2107400 2119400 1755400 2969100 2861600 2516000 3153200 1798700 3289900 198580 3414200 2014200 2254200 1833200 2962300 2873100 2475900 3032800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1931500 3526500 38607 3352800 2107400 2119400 1755400 2969100 2861600 2516000 3153200 1798700 3289900 198580 3414200 2014200 2254200 1833200 2962300 2873100 2475900 3032800 1 1 1 1 1 1 1 1 1 1 1 217990000 0 217990000 18262 423 16773 92706 112157 112157 314 1 SYEVTVENFLR Unmodified 1355.6721 0.67213051 2353 Q92643 PIGK GPI-anchor transamidase yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 68.83 68.885 2 1.4877E-08 21303 20211116_3444_TMUAki_TMT10x_S_F5 156.48 125.79 7865400 13208000 53695 12388000 10079000 12332000 9809600 8604200 7716400 7701200 9671700 7323700 12321000 714260 12695000 9659800 12483000 9899600 8909200 8011100 7558600 9269400 2 2 1 2 2 2 2 2 2 2 2 4949200 7810200 0 7443600 5698900 9039300 6063000 5526700 4958400 4615400 5544200 4608100 7286300 401940 7643500 5472300 9031300 6096700 5769100 5113500 4545200 5330100 1 1 0 1 1 1 1 1 1 1 1 2916100 5397700 53695 4944500 4380500 3292500 3746600 3077500 2758000 3085800 4127500 2715600 5035000 312320 5051500 4187500 3451300 3802900 3140100 2897600 3013400 3939300 1 1 1 1 1 1 1 1 1 1 1 662440000 269550000 392890000 18263 2353 16774 92707;92708 112158;112159 112159 2 SYFLIVR Unmodified 896.51199 0.51198846 87 O00429;O00429-2;O00429-4;O00429-3;O00429-5;O00429-9;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 59.391 59.053 2 0.0042909 20861 20211116_3441_TMUAki_TMT10x_S_F3 114.19 52.861 5727500 9915700 0 8902000 6953700 9643400 6536500 7823700 6933900 7324800 7726600 5332500 9248600 447680 9164200 6654100 9737500 6664400 8031500 7064800 7174400 7429100 2 2 0 2 2 2 2 2 2 2 2 2428900 4181100 0 3897800 3930500 6136200 3324200 3519100 2943700 3150700 3305600 2261400 3900300 213480 4029900 3752900 6054300 3391800 3699100 3024200 3092300 3177500 1 1 0 1 1 1 1 1 1 1 1 3298600 5734600 0 5004200 3023200 3507200 3212400 4304600 3990100 4174100 4421100 3071100 5348300 234200 5134300 2901200 3683200 3272600 4332500 4040500 4082000 4251500 1 1 0 1 1 1 1 1 1 1 1 543490000 275890000 267590000 18264 87 16775 92709;92710 112160;112161 112161 2 SYFSEEGIGYNIIR Unmodified 1646.794 0.79403656 481 P04062;P04062-4;P04062-2 GBA Glucosylceramidase yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 67.045 67.12 2;3 1.0524E-99 20531 20211116_3444_TMUAki_TMT10x_S_F5 367.44 316.09 4332500 7577000 23372 6540500 5413700 6699500 5479700 4601200 4632500 4729600 5396900 4034000 7066200 367860 6748000 5192100 6768100 5528600 4788000 4777000 4613900 5182600 2 2 1 2 2 2 2 2 2 2 2 2352600 4000700 0 3496300 2321300 4141700 2687100 2435600 2492800 2561000 2666300 2190300 3731200 166350 3612000 2233200 4141100 2700500 2566200 2550700 2496100 2566700 1 1 0 1 1 1 1 1 1 1 1 1980000 3576200 23372 3044300 3092400 2557900 2792600 2165700 2139700 2168500 2730600 1843700 3335000 201510 3136000 2959000 2627000 2828100 2221800 2226300 2117800 2615800 1 1 1 1 1 1 1 1 1 1 1 1223400000 404110000 819300000 18265 481 16776 92711;92712;92713 112162;112163;112164 112164 3 SYFSQYGEVVDCVIMK Oxidation (M) 1939.8696 0.86958604 2447 Q96EP5;Q96EP5-2 DAZAP1 DAZ-associated protein 1 yes no 0 0 1 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 77.571 77.584 3 1.4443E-07 27252 20211116_3446_TMUAki_TMT10x_S_F7 110.57 100.23 24176000 42467000 149080 34952000 30115000 42804000 33121000 31905000 31316000 33701000 34306000 22511000 39598000 1773400 36305000 28957000 42877000 33383000 33042000 32044000 32840000 33002000 6 6 2 6 6 6 6 6 6 6 6 12587000 21017000 0 17402000 12237000 26396000 15221000 15764000 16056000 16170000 16760000 11720000 19598000 599080 18143000 11806000 26097000 15309000 16576000 16322000 15776000 16146000 3 3 0 3 3 3 3 3 3 3 3 11589000 21450000 149080 17550000 17878000 16408000 17900000 16141000 15261000 17531000 17547000 10791000 20000000 1174400 18162000 17151000 16780000 18074000 16466000 15722000 17064000 16856000 3 3 2 3 3 3 3 3 3 3 3 5171000000 2858200000 2312800000 18266 2447 16777 92714;92715;92716;92717;92718 112165;112166;112167;112168;112169;112170 112168 2757 6 SYFSQYGEVVDCVIMK Unmodified 1923.8747 0.87467142 2447 Q96EP5;Q96EP5-2 DAZAP1 DAZ-associated protein 1 yes no 0 0 0 0 By MS/MS 7 0 1 1 78.389 78.438 3 0.000228 27635 20211116_3446_TMUAki_TMT10x_S_F7 76.85 59.971 4228200 6445700 0 6181500 4825000 4083800 5407000 2666400 2195100 2735400 4441500 3936200 6013500 273430 6293400 4635500 4257800 5354700 2784600 2453400 2668700 4215000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4228200 6445700 0 6181500 4825000 4083800 5407000 2666400 2195100 2735400 4441500 3936200 6013500 273430 6293400 4635500 4257800 5354700 2784600 2453400 2668700 4215000 1 1 0 1 1 1 1 1 1 1 1 968640000 0 968640000 18267 2447 16777 92719 112171 112171 1 SYGIPFIETSAK Unmodified 1311.6711 0.67106787 477;478 P01111;P01116;P01116-2 NRAS;KRAS GTPase NRas;GTPase KRas;GTPase KRas, N-terminally processed no no 0 0 0 0 By MS/MS 7 0 2 2 66.629 67.004 2;3 1.5702E-11 22804 20211116_3446_TMUAki_TMT10x_S_F7 127.42 107.91 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18268 477;478 16778 92720;92721 112172;112173 112173 2 SYGPAPGAGHVQEESNLSLQALESR Unmodified 2596.2518 0.25175761 1603 Q13155 AIMP2 Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 0.943 1 3 1 1 3 3 52.868 52.957 3;4 5.152E-97 17262 20211116_3430_TMUAki_TMT10x_P_F3 280.4 271.3 12000000 20004000 403.58 22173000 19215000 25999000 15171000 14802000 16774000 15858000 16071000 11173000 18674000 800290 22524000 18320000 25999000 15650000 15646000 16969000 15444000 15525000 5 5 1 5 5 5 5 5 5 5 5 8927600 14078000 403.58 16752000 15827000 22485000 12853000 10530000 11543000 11677000 12021000 8312200 13146000 800290 16986000 15098000 22284000 13152000 11344000 11818000 11357000 11581000 3 3 1 3 3 3 3 3 3 3 3 3072200 5926800 0 5421100 3388400 3514000 2318300 4271400 5230500 4181300 4050000 2860500 5528400 0 5537600 3222000 3714500 2497600 4301900 5151800 4087300 3943500 2 2 0 2 2 2 2 2 2 2 2 4117300000 2189100000 1928200000 18269 1603 16779 92722;92723;92724;92725;92726;92727 112174;112175;112176;112177;112178 112174 5 SYGRPPPDVEGMTSLK Acetyl (Protein N-term) 1774.856 0.85598488 1479 Q01130;Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 yes no 1 0 0 1 By MS/MS By MS/MS 5 0.707 1 2 1 1 3 55.169 55.248 2;3 2.767E-30 16744 20211116_3433_TMUAki_TMT10x_P_F5 82.543 57.305 6281800 10360000 18955 14309000 4174100 3095200 3789900 3726000 3123300 3831300 6952100 5848600 9682000 442810 14151000 3989600 3859100 3843700 3759600 3342400 3737500 6587900 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6281800 10360000 18955 14309000 4174100 3095200 3789900 3726000 3123300 3831300 6952100 5848600 9682000 442810 14151000 3989600 3859100 3843700 3759600 3342400 3737500 6587900 3 3 1 3 3 3 3 3 3 3 3 1221200000 0 1221200000 18270 1479 16780 92728;92729;92730;92731 112179;112180;112181;112182 112179 4 SYGRPPPDVEGMTSLKVDNLTYR Acetyl (Protein N-term);Oxidation (M) 2652.2854 0.28536592 1479 Q01130;Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 yes no 1 0 1 2 By MS/MS By MS/MS 4.75 0.829 2 1 1 2 2 53.337 53.47 3 1.263E-07 15235 20211116_3445_TMUAki_TMT10x_S_F6 49.076 40.582 5773700 11262000 60491 6913400 9920400 15160000 8132000 18889000 18133000 16194000 11374000 5376200 10493000 576410 7483300 9469700 15019000 8651800 18936000 17770000 15927000 11181000 4 4 2 4 4 4 4 4 4 4 4 2515700 4462200 8246.8 3169000 3669100 9111400 4274100 7468700 7373000 6435800 4399800 2342300 4158800 217050 3413100 3532800 8878600 4399700 7645700 7259700 6328000 4336400 2 2 1 2 2 2 2 2 2 2 2 3258000 6800300 52244 3744300 6251200 6048600 3857900 11420000 10760000 9758400 6974300 3033900 6334000 359360 4070100 5936900 6140500 4252000 11290000 10510000 9599000 6845100 2 2 1 2 2 2 2 2 2 2 2 5630300000 2989000000 2641300000 18271 1479 16781 92732;92733;92734;92735 112183;112184;112185;112186 112186 2006 4 SYGRPPPDVEGMTSLKVDNLTYR Acetyl (Protein N-term) 2636.2905 0.2904513 1479 Q01130;Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 yes no 1 0 0 2 By MS/MS By MS/MS 6.6 0.49 2 3 3 2 62.371 62.663 3 2.4978E-46 18985 20211116_3445_TMUAki_TMT10x_S_F6 99.93 88.729 19363000 35709000 131950 27563000 31299000 28081000 26422000 15660000 11633000 19506000 24613000 18029000 33290000 1790100 28702000 29890000 28296000 26598000 16664000 12943000 18892000 23341000 8 8 4 8 8 8 8 8 8 8 8 8656500 15540000 66418 12183000 11509000 17558000 14121000 7361900 5374300 9411900 10799000 8060100 14488000 757110 12746000 11101000 17326000 13917000 8061000 6042700 9107700 10250000 4 4 1 4 4 4 4 4 4 4 4 10706000 20169000 65536 15380000 19790000 10523000 12301000 8297900 6259000 10094000 13813000 9968500 18802000 1033000 15956000 18788000 10970000 12682000 8602800 6899900 9784500 13091000 4 4 3 4 4 4 4 4 4 4 4 3252100000 1425300000 1826800000 18272 1479 16781 92736;92737;92738;92739;92740 112187;112188;112189;112190;112191;112192;112193;112194;112195 112192 9 SYIATQGCLQNTVNDFWR Unmodified 2172.0058 0.0058370195 1523 Q06124;Q06124-3;Q06124-1 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 0 0 0 0 By MS/MS 8 0 1 1 75.172 75.186 3 0.057352 24428 20211116_3436_TMUAki_TMT10x_P_F8 37.925 31.763 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18273 1523 16782 92741 112196 112196 1 SYIDFEIEQEETER Unmodified 1786.7897 0.78973904 2740 Q9BZJ0;Q9BZJ0-2;Q9BZJ0-3 CRNKL1 Crooked neck-like protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 3 2 1 62.27 62.178 2;3 3.1112E-09 18975 20211116_3428_TMUAki_TMT10x_P_F1 122.78 112.17 18069000 32107000 184540 25793000 19453000 34476000 22930000 26255000 25623000 25789000 25642000 16825000 29936000 1649800 26889000 18749000 34402000 23161000 27095000 25950000 25206000 24736000 6 6 5 6 6 6 6 6 6 6 6 12176000 21095000 108850 17167000 12118000 27010000 14929000 17543000 17035000 17104000 16968000 11337000 19669000 1070600 17937000 11694000 26696000 15061000 18301000 17235000 16723000 16370000 4 4 3 4 4 4 4 4 4 4 4 5892800 11012000 75688 8626100 7335100 7466400 8001600 8712200 8588700 8684400 8674600 5487300 10267000 579290 8951300 7054500 7705800 8099700 8794300 8714900 8482800 8365400 2 2 2 2 2 2 2 2 2 2 2 1234600000 899610000 335010000 18274 2740 16783 92742;92743;92744 112197;112198;112199;112200;112201;112202 112197 6 SYIDFEIEQEETERTR Unmodified 2043.9385 0.93852854 2740 Q9BZJ0;Q9BZJ0-2;Q9BZJ0-3 CRNKL1 Crooked neck-like protein 1 yes no 0 0 0 1 By MS/MS 1 0 1 1 54.063 53.768 3 2.1766E-10 17639 20211116_3439_TMUAki_TMT10x_S_F1 122.75 106 1276600 2017100 9393 2301300 1487600 1096300 1045200 1649000 1721200 1485800 1785400 1188700 1883300 117550 2309600 1415900 1203600 1104200 1643800 1723700 1457800 1720400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1276600 2017100 9393 2301300 1487600 1096300 1045200 1649000 1721200 1485800 1785400 1188700 1883300 117550 2309600 1415900 1203600 1104200 1643800 1723700 1457800 1720400 1 1 1 1 1 1 1 1 1 1 1 151950000 0 151950000 18275 2740 16784 92745 112203 112203 1 SYIDRDSEYLLQENEPDGTLDQK Unmodified 2727.2511 0.25114849 2794 Q9H2U1;Q9H2U1-3;Q9H2U1-2 DHX36 ATP-dependent RNA helicase DHX36 yes no 0 0 0 1 By MS/MS 1 0 1 1 61.516 61.516 4 1.4626E-27 18711 20211116_3428_TMUAki_TMT10x_P_F1 162.85 151.11 2143900 3470300 0 3851200 2997000 4612900 2975400 2833500 2613800 2522300 3038000 1995200 3239600 75177 3913400 2865700 4612300 3008000 2961400 2689900 2476200 2917500 1 1 0 1 1 1 1 1 1 1 1 2143900 3470300 0 3851200 2997000 4612900 2975400 2833500 2613800 2522300 3038000 1995200 3239600 75177 3913400 2865700 4612300 3008000 2961400 2689900 2476200 2917500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 774400000 774400000 0 18276 2794 16785 92746 112204 112204 1 SYIEGYVPSQADVAVFEAVSSPPPADLCHALR Unmodified 3444.666 0.66600585 792 P24534 EEF1B2 Elongation factor 1-beta yes yes 0 0 0 0 By MS/MS By MS/MS 5.65 1.52 2 4 5 4 5 3 14 9 79.011 79.008 3;4 1.0286E-35 25461 20211116_3445_TMUAki_TMT10x_S_F6 166.28 158.41 67090000 121900000 1413900 105990000 75412000 102240000 89860000 66836000 63274000 72907000 83601000 62476000 113690000 5470100 109190000 72738000 103590000 89570000 69923000 66255000 70955000 80018000 38 38 20 38 38 38 38 38 38 38 38 34197000 59212000 573360 52338000 30370000 58919000 40180000 34139000 31540000 37122000 41313000 31843000 55226000 2454400 53978000 29387000 59060000 39976000 36050000 32811000 36133000 39551000 20 20 9 20 20 20 20 20 20 20 20 32894000 62691000 840500 53647000 45042000 43320000 49680000 32697000 31734000 35785000 42288000 30633000 58463000 3015700 55213000 43351000 44530000 49595000 33873000 33443000 34822000 40467000 18 18 11 18 18 18 18 18 18 18 18 51333000000 27656000000 23677000000 18277 792 16786 92747;92748;92749;92750;92751;92752;92753;92754;92755;92756;92757;92758;92759;92760;92761;92762;92763;92764;92765;92766;92767;92768;92769 112205;112206;112207;112208;112209;112210;112211;112212;112213;112214;112215;112216;112217;112218;112219;112220;112221;112222;112223;112224;112225;112226;112227;112228;112229;112230;112231;112232;112233;112234;112235;112236;112237;112238;112239;112240;112241;112242;112243 112233 39 SYKCEECPK 2 Carbamidomethyl (C) 1313.538 0.53802156 2217 Q8NAM6 ZSCAN4 Zinc finger and SCAN domain-containing protein 4 yes yes 0 2 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 61.963 61.865 2 0.005978 19282 20211116_3431_TMUAki_TMT10x_P_F4 67.032 27.115 4834600 7612000 117250 8313000 5392600 6439500 4728400 5218500 4845200 5298600 5535200 4502300 7105500 517910 8403100 5161000 6648300 4834600 5369800 4948600 5171600 5318200 2 2 2 2 2 2 2 2 2 2 2 2514200 3634200 37466 3968300 3111900 4252400 2620900 2692500 2519300 2630500 2714700 2341300 3392400 251740 4029000 2973800 4279500 2681100 2814400 2574300 2571700 2612800 1 1 1 1 1 1 1 1 1 1 1 2320300 3977800 79787 4344600 2280600 2187100 2107400 2526000 2326000 2668100 2820400 2161100 3713100 266180 4374100 2187300 2368700 2153500 2555400 2374300 2600000 2705500 1 1 1 1 1 1 1 1 1 1 1 987730000 420440000 567290000 18278 2217 16787 92770;92771;92772 112244 112244 20;21 1 SYKPVFWSPSSR Unmodified 1439.7197 0.7197494 2942 Q9NSE4 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 0 0 0 1 By MS/MS 5 0 1 1 50.56 50.744 3 0.030136 13828 20211116_3444_TMUAki_TMT10x_S_F5 55.66 38.747 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18279 2942 16788 92773 112245 112245 1 SYLEFSEDSVQVPR Unmodified 1654.7839 0.7838658 1149 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 4 2 3 3 62.577 62.289 2;3 8.4907E-24 21125 20211116_3430_TMUAki_TMT10x_P_F3 190.85 171.61 8848900 15595000 112450 15707000 10583000 11236000 10697000 10704000 10019000 10843000 11725000 8240000 14552000 852020 15949000 10156000 11710000 10823000 10914000 10283000 10584000 11258000 4 4 2 4 4 4 4 4 4 4 4 1738100 2653700 0 2810400 2090300 3569900 2295600 2170500 1848400 1896700 2036000 1618300 2476800 146160 2867400 2009200 3558500 2304000 2269200 1906700 1863700 1958200 1 1 0 1 1 1 1 1 1 1 1 7110800 12941000 112450 12896000 8492700 7665800 8401300 8533400 8170700 8946100 9688800 6621700 12075000 705860 13081000 8147200 8151500 8519500 8644700 8376200 8720200 9299400 3 3 2 3 3 3 3 3 3 3 3 840640000 214960000 625680000 18280 1149 16789 92774;92775;92776;92777;92778;92779 112246;112247;112248;112249;112250;112251;112252 112246 7 SYLMTNYESAPPSPQYK Oxidation (M) 1990.8982 0.89824363 317 O75223 GGCT Gamma-glutamylcyclotransferase yes yes 0 0 1 0 By MS/MS By MS/MS 7 0 2 1 1 51.765 52.362 3 8.4252E-05 16193 20211116_3435_TMUAki_TMT10x_P_F7 79.837 68.557 7482400 13706000 112100 14466000 9429100 13371000 8445100 11860000 12234000 11178000 11542000 6967700 12792000 752080 14688000 9023100 13655000 8735000 12115000 12256000 10945000 11156000 4 4 4 4 4 4 4 4 4 4 4 3339500 5590300 55552 6161900 5403200 9010700 4692800 5186600 5386600 4825200 4891300 3109800 5218500 357540 6288400 5166400 8917900 4818700 5455500 5432000 4727400 4733800 2 2 2 2 2 2 2 2 2 2 2 4142900 8115500 56552 8304000 4025900 4360300 3752300 6673700 6847500 6352800 6650800 3857800 7573300 394540 8399200 3856800 4737200 3916200 6659000 6823800 6217700 6421900 2 2 2 2 2 2 2 2 2 2 2 1085600000 727040000 358520000 18281 317 16790 92780;92781 112253;112254;112255;112256 112253 235 4 SYLYQLQQEAPHPR Unmodified 1728.8584 0.85836815 688 P15882;P15882-3 CHN1 N-chimaerin yes no 0 0 0 0 By MS/MS 7 0 1 1 48.703 49.327 3 0.0010447 15045 20211116_3435_TMUAki_TMT10x_P_F7 67.136 51.245 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18282 688 16791 92782 112257 112257 1 SYNDELQFLEK Unmodified 1384.6511 0.65106071 3285 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog yes yes 0 0 0 0 By MS/MS By MS/MS 3.56 1.17 1 2 4 5 4 8 8 67.219 67.13 2;3 2.0825E-59 21853 20211116_3442_TMUAki_TMT10x_S_F4 325.74 245.57 54838000 94309000 66367 92100000 74587000 97845000 64362000 73563000 74435000 70998000 75129000 51056000 87992000 4285900 94199000 71225000 98778000 66131000 75943000 75309000 69446000 72452000 10 10 2 10 10 10 10 10 10 10 10 31573000 54575000 66367 52162000 49277000 75764000 44080000 41968000 43450000 41027000 43022000 29395000 50916000 2546500 53737000 47097000 74968000 44965000 44348000 44215000 40108000 41515000 6 6 2 6 6 6 6 6 6 6 6 23265000 39734000 0 39939000 25310000 22081000 20282000 31595000 30986000 29971000 32106000 21661000 37077000 1739400 40462000 24128000 23810000 21167000 31595000 31094000 29338000 30937000 4 4 0 4 4 4 4 4 4 4 4 6366300000 3907600000 2458800000 18283 3285 16792 92783;92784;92785;92786;92787;92788;92789;92790;92791;92792;92793;92794;92795;92796;92797;92798 112258;112259;112260;112261;112262;112263;112264;112265;112266;112267;112268;112269;112270;112271;112272;112273;112274 112270 17 SYNQEHSQSFTFDDAQQEDR Unmodified 2430.9949 0.99487422 2897 Q9NPQ8;Q9NPQ8-4;Q9NPQ8-3 RIC8A Synembryn-A yes no 0 0 0 0 By MS/MS 3 0 1 1 38.605 38.333 3 1.793E-08 12350 20211116_3441_TMUAki_TMT10x_S_F3 105.06 90.451 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18284 2897 16793 92799 112275 112275 1 SYQDAVLEDIFKK Unmodified 1554.793 0.79297392 3341 Q9Y680;Q9Y680-3 FKBP7 Peptidyl-prolyl cis-trans isomerase FKBP7 yes no 0 0 0 1 By MS/MS 6 0 1 1 74.146 74.072 3 1.1093E-05 23710 20211116_3445_TMUAki_TMT10x_S_F6 89.358 73.54 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18285 3341 16794 92800 112276 112276 1 SYQDPSNAQFLESIR Unmodified 1753.8271 0.8271276 3203 Q9UNZ2;Q9UNZ2-5;Q9UNZ2-4;Q9UNZ2-6 NSFL1C NSFL1 cofactor p47 yes no 0 0 0 0 By MS/MS By MS/MS 4.4 0.49 3 2 2 3 59.128 59.177 2;3 9.9189E-61 17303 20211116_3444_TMUAki_TMT10x_S_F5 303.15 276.4 25646000 40612000 86353 43559000 29796000 38419000 29397000 26621000 24773000 27889000 31411000 23878000 37906000 2085700 44152000 28553000 39191000 29697000 27700000 25640000 27186000 30095000 7 7 2 7 7 7 7 7 7 7 7 16144000 25189000 86353 26415000 19592000 29567000 19625000 16562000 15274000 17705000 19557000 15031000 23508000 1353000 26908000 18784000 29634000 19770000 17529000 15881000 17244000 18733000 4 4 2 4 4 4 4 4 4 4 4 9501700 15423000 0 17144000 10204000 8852000 9772700 10060000 9498700 10185000 11854000 8846500 14398000 732660 17244000 9769400 9556400 9926900 10171000 9758900 9941600 11362000 3 3 0 3 3 3 3 3 3 3 3 3200000000 1480800000 1719200000 18286 3203 16795 92801;92802;92803;92804;92805 112277;112278;112279;112280;112281;112282;112283 112283 7 SYRDQTIVDPFSSK Unmodified 1641.7999 0.79985021 3219 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 1 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 51.015 51.314 3 2.6194E-06 13917 20211116_3434_TMUAki_TMT10x_P_F6 110.55 84.113 56855000 100060000 794520 107370000 82438000 96788000 60944000 94007000 96251000 87127000 88195000 52939000 93398000 5350000 108860000 78523000 99192000 64035000 95515000 96088000 85376000 85328000 9 9 7 9 9 9 9 9 9 9 9 24235000 41500000 416890 42795000 53935000 67735000 38800000 40451000 39565000 36284000 37107000 22567000 38729000 2689000 43939000 51352000 66853000 40172000 42380000 40129000 35609000 35872000 4 4 3 4 4 4 4 4 4 4 4 32620000 58564000 377630 64577000 28503000 29053000 22144000 53556000 56686000 50843000 51088000 30372000 54669000 2661000 64923000 27171000 32339000 23863000 53134000 55958000 49767000 49456000 5 5 4 5 5 5 5 5 5 5 5 4020800000 2281800000 1739000000 18287 3219 16796 92806;92807;92808;92809;92810;92811 112284;112285;112286;112287;112288;112289;112290;112291;112292 112284 9 SYRLDIK Unmodified 893.49707 0.49706667 142 O14929;O14929-2 HAT1 Histone acetyltransferase type B catalytic subunit yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 38.545 38.89 3 0.097401 10885 20211116_3435_TMUAki_TMT10x_P_F7 39.547 16.766 1007900 1462400 8282.7 1659200 1460800 1352400 1086500 1099900 1092000 1036200 1267900 938510 1365300 96311 1674200 1391700 1391000 1121800 1129100 1117000 1014700 1217700 2 2 1 2 2 2 2 2 2 2 2 562270 767760 0 834540 998660 990060 632420 628510 591040 585590 682110 523520 716650 51414 848970 948270 990890 659360 655990 606320 573690 655190 1 1 0 1 1 1 1 1 1 1 1 445640 694670 8282.7 824640 462160 362330 454060 471360 501000 450640 585800 414990 648690 44897 825180 443440 400090 462450 473120 510640 440970 562470 1 1 1 1 1 1 1 1 1 1 1 36629000 25960000 10668000 18288 142 16797 92812;92813;92814 112293 112293 1 SYSDPPLK Unmodified 905.44945 0.44944778 1181 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 0 0 0 0 By MS/MS 4 0 1 1 37.968 38.126 2 0.022655 10043 20211116_3442_TMUAki_TMT10x_S_F4 69.598 39.413 285650 515690 0 509240 312320 262090 368380 286950 332680 280480 466850 265930 481170 18866 516270 300540 282800 369630 290300 344770 274200 446200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 285650 515690 0 509240 312320 262090 368380 286950 332680 280480 466850 265930 481170 18866 516270 300540 282800 369630 290300 344770 274200 446200 1 1 0 1 1 1 1 1 1 1 1 15242000 0 15242000 18289 1181 16798 92815 112294 112294 1 SYSFDEIRK Unmodified 1143.556 0.55603812 1031 P43490 NAMPT Nicotinamide phosphoribosyltransferase yes yes 0 0 0 1 By MS/MS 6 0 1 1 42.984 43.037 3 2.8999E-05 10644 20211116_3434_TMUAki_TMT10x_P_F6 104.39 89.017 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18290 1031 16799 92816 112295 112295 1 SYSMIVNNLLKPISVEGSSK Oxidation (M) 2181.1351 0.13511986 2855 Q9HB71;Q9HB71-3 CACYBP Calcyclin-binding protein yes no 0 0 1 1 By MS/MS By MS/MS 2.86 0.639 2 4 1 4 3 76.033 75.942 3;4 5.6066E-33 27627 20211116_3441_TMUAki_TMT10x_S_F3 197.86 181.92 59621000 101940000 663500 93311000 68055000 104840000 75638000 72327000 73256000 78210000 73729000 55515000 95086000 5341700 95974000 65463000 105360000 76253000 75354000 74647000 76141000 71109000 10 10 8 10 10 10 10 10 10 10 10 34799000 55507000 493170 51776000 32374000 70103000 42177000 39566000 39795000 43216000 39206000 32403000 51780000 3063200 53357000 31302000 69599000 42195000 41878000 40568000 42057000 37839000 5 5 4 5 5 5 5 5 5 5 5 24822000 46430000 170340 41535000 35681000 34738000 33461000 32761000 33461000 34993000 34523000 23112000 43306000 2278400 42617000 34161000 35764000 34057000 33476000 34079000 34084000 33270000 5 5 4 5 5 5 5 5 5 5 5 13471000000 6316000000 7155200000 18291 2855 16800 92817;92818;92819;92820;92821;92822;92823 112296;112297;112298;112299;112300;112301;112302;112303;112304;112305 112303 2983 10 SYSMIVNNLLKPISVEGSSK Unmodified 2165.1402 0.14020524 2855 Q9HB71;Q9HB71-3 CACYBP Calcyclin-binding protein yes no 0 0 0 1 By MS/MS By MS/MS 3.8 0.4 1 4 3 2 77.355 77.322 3;4 1.1241E-32 25994 20211116_3442_TMUAki_TMT10x_S_F4 196.31 176.99 31312000 50709000 205020 51479000 34592000 32585000 37574000 15482000 12342000 18210000 31344000 29155000 47320000 2735200 52180000 33249000 33977000 37176000 16686000 14335000 17673000 29648000 5 5 4 5 5 5 5 5 5 5 5 13931000 20930000 64134 21053000 12225000 17832000 15436000 6545100 5155000 7741900 13137000 12971000 19530000 1093100 21420000 11801000 18111000 15172000 7260000 5977400 7511900 12426000 2 2 1 2 2 2 2 2 2 2 2 17381000 29779000 140890 30426000 22366000 14753000 22138000 8936600 7187400 10468000 18207000 16185000 27789000 1642100 30760000 21449000 15865000 22004000 9425500 8357100 10161000 17222000 3 3 3 3 3 3 3 3 3 3 3 4452100000 2522000000 1930100000 18292 2855 16800 92824;92825;92826;92827;92828 112306;112307;112308;112309;112310 112308 5 SYSMIVNNLLKPISVEGSSKK Oxidation (M) 2309.2301 0.23008288 2855 Q9HB71;Q9HB71-3 CACYBP Calcyclin-binding protein yes no 0 0 1 2 By MS/MS By MS/MS 3.6 0.49 2 3 3 2 69.09 68.942 4;5 9.0824E-14 22115 20211116_3431_TMUAki_TMT10x_P_F4 129.32 123.09 22667000 35818000 333020 33364000 27291000 42476000 26087000 34896000 34689000 31948000 29953000 21108000 33412000 2254400 34346000 26158000 42539000 26790000 35774000 34746000 31323000 29042000 4 4 4 4 4 4 4 4 4 4 4 13604000 21010000 280130 19722000 15041000 31075000 15699000 21477000 21491000 19019000 17242000 12669000 19600000 1409100 20380000 14455000 30741000 16069000 22247000 21459000 18676000 16764000 2 2 2 2 2 2 2 2 2 2 2 9063000 14807000 52893 13642000 12250000 11401000 10388000 13419000 13198000 12929000 12712000 8438900 13812000 845320 13966000 11702000 11798000 10721000 13527000 13287000 12647000 12277000 2 2 2 2 2 2 2 2 2 2 2 5580200000 2887200000 2693100000 18293 2855 16801 92829;92830;92831;92832;92833 112311;112312;112313;112314 112312 2983 4 SYSMIVNNLLKPISVEGSSKK Unmodified 2293.2352 0.23516825 2855 Q9HB71;Q9HB71-3 CACYBP Calcyclin-binding protein yes no 0 0 0 2 By MS/MS By MS/MS 5 0 2 1 1 71.49 71.529 4 4.4422E-07 23452 20211116_3433_TMUAki_TMT10x_P_F5 89.483 81.491 29514000 45252000 214530 51967000 33540000 35542000 34593000 15774000 11621000 16561000 29600000 27479000 42250000 2289800 52295000 32173000 36777000 34323000 17059000 13465000 16142000 27998000 4 4 2 4 4 4 4 4 4 4 4 21864000 33518000 107240 38081000 24017000 29707000 26507000 11286000 8196100 12144000 21429000 20355000 31293000 1529300 38402000 23071000 30366000 26190000 12430000 9608900 11826000 20262000 3 3 1 3 3 3 3 3 3 3 3 7649900 11734000 107280 13886000 9523100 5835500 8086100 4488400 3424600 4417000 8171500 7123600 10957000 760450 13894000 9101600 6411200 8132900 4629300 3856400 4316800 7735800 1 1 1 1 1 1 1 1 1 1 1 1600800000 785270000 815560000 18294 2855 16801 92834;92835 112315;112316;112317;112318 112315 4 SYTGLAPGYTYQFPEFR Unmodified 1995.9367 0.93667805 210 O43347 MSI1 RNA-binding protein Musashi homolog 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 4 2 2 4 74.127 74.064 2;3 3.0069E-48 25843 20211116_3439_TMUAki_TMT10x_S_F1 257.02 211.03 18025000 29833000 188370 27321000 19680000 26646000 21649000 18228000 17029000 20364000 20984000 16783000 27828000 1570500 28039000 18923000 26998000 21714000 19022000 17666000 19801000 20120000 8 8 3 8 8 8 8 8 8 8 8 8843500 14144000 188370 13392000 7777500 16422000 10022000 8975600 8327800 10104000 9852400 8235400 13195000 880230 13760000 7524300 16375000 9995600 9535400 8600300 9821900 9457000 4 4 3 4 4 4 4 4 4 4 4 9181400 15689000 0 13929000 11903000 10225000 11628000 9252700 8700700 10260000 11132000 8547900 14633000 690310 14279000 11399000 10623000 11718000 9486700 9065900 9979100 10663000 4 4 0 4 4 4 4 4 4 4 4 3832400000 1527000000 2305400000 18295 210 16802 92836;92837;92838;92839;92840;92841 112319;112320;112321;112322;112323;112324;112325;112326;112327 112325 9 SYTPGVGGDPAQLAQR Acetyl (Protein N-term) 1657.806 0.80599822 190 O15400;O15400-2 STX7 Syntaxin-7 yes no 1 0 0 0 By MS/MS 3 0 1 1 52.771 52.62 2 3.7835E-06 17118 20211116_3430_TMUAki_TMT10x_P_F3 71.085 56.391 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18296 190 16803 92842 112328 112328 1 SYVDLYVK Unmodified 985.51205 0.51204804 1500 Q02880;Q02880-2 TOP2B DNA topoisomerase 2-beta yes no 0 0 0 0 By MS/MS 6 0 1 1 56.722 56.795 2 0.002321 16605 20211116_3445_TMUAki_TMT10x_S_F6 103.83 63.73 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18297 1500 16804 92843 112329 112329 1 SYYEANDVTSAINIIDEAFSK Unmodified 2349.1012 0.10123677 3326 Q9Y5Q9;Q9Y5Q9-2 GTF3C3 General transcription factor 3C polypeptide 3 yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 1 1 1 1 2 81.993 81.968 3 2.6206E-11 27889 20211116_3442_TMUAki_TMT10x_S_F4 120.41 96.374 3901300 6865100 51400 6095800 4824000 4652500 5079700 3730200 4082700 3929500 4927600 3632900 6403000 384270 6251400 4635000 4808000 5108300 3845100 4227000 3829500 4727400 3 3 3 3 3 3 3 3 3 3 3 811010 1317500 31583 1181700 725490 1368000 801270 838800 766750 827380 992700 755360 1228900 95475 1217900 699450 1370200 807730 879200 789560 808530 950630 1 1 1 1 1 1 1 1 1 1 1 3090300 5547600 19816 4914100 4098500 3284500 4278400 2891400 3315900 3102100 3934900 2877500 5174100 288790 5033500 3935500 3437700 4300600 2966000 3437500 3021000 3776700 2 2 2 2 2 2 2 2 2 2 2 402970000 115990000 286980000 18298 3326 16805 92844;92845;92846 112330;112331;112332 112332 3 SYYSVQTAEWQAHPLYGSRPTLPR Unmodified 2806.3827 0.3827122 2225 Q8NBM8 PCYOX1L Prenylcysteine oxidase-like yes yes 0 0 0 1 By matching By MS/MS 2.67 0.471 1 2 2 1 53.554 53.296 4 3.7378E-38 18485 20211116_3441_TMUAki_TMT10x_S_F3 195.13 180.58 820640 1463400 25938 1679000 771030 810670 782530 902220 881770 892110 1107300 764290 1366300 91515 1684600 741160 881480 796220 912390 900710 871700 1061200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 820640 1463400 25938 1679000 771030 810670 782530 902220 881770 892110 1107300 764290 1366300 91515 1684600 741160 881480 796220 912390 900710 871700 1061200 1 1 1 1 1 1 1 1 1 1 1 533870000 384730000 149140000 18299 2225 16806 92847;92848;92849 112333 112333 1 TAAALAPASLTSAR Unmodified 1299.7147 0.71466402 3216 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.2 3.43 2 3 2 3 44.589 44.566 2;3 2.156E-23 11879 20211116_3436_TMUAki_TMT10x_P_F8 191.31 157.23 5997700 10013000 17136 11093000 9093800 8826400 6308300 7853700 7766300 7076400 8842800 5584400 9347400 528080 11207000 8648800 9109700 6589600 8010900 7875200 6943200 8497000 5 5 3 5 5 5 5 5 5 5 5 2325400 3878100 4209.6 4390800 5726400 5943000 3138900 3297100 3512800 2982400 3657900 2165100 3620600 224900 4466400 5424700 5899100 3330800 3476400 3562400 2925700 3524100 2 2 1 2 2 2 2 2 2 2 2 3672300 6135000 12926 6702200 3367400 2883400 3169400 4556500 4253500 4094100 5184900 3419300 5726800 303170 6740200 3224100 3210600 3258800 4534500 4312800 4017500 4972900 3 3 2 3 3 3 3 3 3 3 3 684430000 371340000 313100000 18300 3216 16807 92850;92851;92852;92853;92854 112334;112335;112336;112337;112338 112335 5 TAAANAAAGAAENAFR Unmodified 1475.7117 0.71170391 138 O14828;O14828-2 SCAMP3 Secretory carrier-associated membrane protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 6.17 0.898 2 1 3 4 2 47.987 48.331 2;3 7.1552E-77 15148 20211116_3446_TMUAki_TMT10x_S_F7 288.29 244.78 4289700 7134200 0 7605800 8722500 11632000 6478800 7101400 7217700 6317200 6648100 3993800 6658700 369690 7786000 8304000 11499000 6711900 7425400 7290300 6202000 6430800 3 3 0 3 3 3 3 3 3 3 3 4289700 7134200 0 7605800 8722500 11632000 6478800 7101400 7217700 6317200 6648100 3993800 6658700 369690 7786000 8304000 11499000 6711900 7425400 7290300 6202000 6430800 3 3 0 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1141100000 1141100000 0 18301 138 16808 92855;92856;92857;92858;92859;92860 112339;112340;112341;112342;112343;112344;112345 112345 7 TAAANAAAGAAENAFRAP Unmodified 1643.8016 0.80158155 138 O14828;O14828-2 SCAMP3 Secretory carrier-associated membrane protein 3 yes no 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 53.326 53.839 3 3.3064E-17 17377 20211116_3446_TMUAki_TMT10x_S_F7 144.72 125.45 2159200 3508600 41982 3850600 2508900 1873700 1933200 2742800 2181200 2456000 2863600 2010800 3275100 223040 3874600 2393700 2050300 1998700 2736300 2232300 2410500 2741300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2159200 3508600 41982 3850600 2508900 1873700 1933200 2742800 2181200 2456000 2863600 2010800 3275100 223040 3874600 2393700 2050300 1998700 2736300 2232300 2410500 2741300 1 1 1 1 1 1 1 1 1 1 1 600300000 0 600300000 18302 138 16809 92861;92862;92863 112346;112347;112348 112348 3 TAAEDAIR Unmodified 845.4243 0.42429566 2707 Q9BWF3;Q9BWF3-3;Q9BWF3-4;Q9BWF3-2;Q9BQ04 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 0 0 0 0 By matching By MS/MS 1 0 2 1 1 29.622 29.654 2 0.092008 7797 20211116_3439_TMUAki_TMT10x_S_F1 49.96 31.558 401190 649360 0 436690 373690 517840 432040 249870 257250 229240 407650 373540 605130 32182 461730 359740 516510 429780 266950 274690 224740 388590 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 401190 649360 0 436690 373690 517840 432040 249870 257250 229240 407650 373540 605130 32182 461730 359740 516510 429780 266950 274690 224740 388590 1 1 0 1 1 1 1 1 1 1 1 5213100 1937800 3275300 18303 2707 16810 92864;92865 112349 112349 1 TAAELLQSQGSQAGGSQTLKR Unmodified 2130.1029 0.10290853 1681 Q14141;Q14141-2;Q14141-4 SEPT6 Septin-6 yes no 0 0 0 1 By MS/MS By MS/MS 8 0 3 1 2 43.722 43.733 3;4 5.506E-102 11064 20211116_3447_TMUAki_TMT10x_S_F8 321.63 286.94 1720000 3166600 51705 3537400 1439200 1355500 1448700 3043900 3503800 2451100 3150200 1601800 2956100 183630 3549900 1383200 1553400 1532600 2991800 3462100 2418300 3049800 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1720000 3166600 51705 3537400 1439200 1355500 1448700 3043900 3503800 2451100 3150200 1601800 2956100 183630 3549900 1383200 1553400 1532600 2991800 3462100 2418300 3049800 3 3 2 3 3 3 3 3 3 3 3 169880000 0 169880000 18304 1681 16811 92866;92867;92868 112350;112351;112352;112353 112351 4 TAAFALPVLER Unmodified 1186.671 0.67100829 2476 Q96GQ7 DDX27 Probable ATP-dependent RNA helicase DDX27 yes yes 0 0 0 0 By MS/MS 7 0 1 1 65.882 66.287 2 0.0047181 22504 20211116_3446_TMUAki_TMT10x_S_F7 73.887 55.851 5585200 9750700 609180 10346000 7283600 8094700 7248000 8831400 8438000 8986100 8789100 5204900 9100700 1054600 10479000 7019800 8401800 7390600 8946600 8544600 8769900 8467700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5585200 9750700 609180 10346000 7283600 8094700 7248000 8831400 8438000 8986100 8789100 5204900 9100700 1054600 10479000 7019800 8401800 7390600 8946600 8544600 8769900 8467700 1 1 1 1 1 1 1 1 1 1 1 307900000 0 307900000 18305 2476 16812 92869 112354 112354 1 TAAFLLPILSQIYSDGPGEALR Unmodified 2331.2474 0.2474475 104 O00571;O00571-2 DDX3X ATP-dependent RNA helicase DDX3X yes no 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 2 3 83.115 83.1 3 8.1004E-15 27917 20211116_3431_TMUAki_TMT10x_P_F4 137.35 117.26 4134300 6874600 35373 7287400 4006000 6972400 5658000 3939100 3337100 3888000 4941800 3849200 6416200 277730 7400500 3880800 7054300 5580900 4156600 3464400 3799400 4717500 6 6 1 6 6 6 6 6 5 6 6 3700800 5834500 35373 6321500 3585200 6123600 4094400 3251000 3309600 3305000 4280200 3445600 5446000 277730 6411600 3448700 6186000 4102200 3451900 3435700 3225600 4098900 4 4 1 4 4 4 4 4 4 4 4 433420 1040100 0 965870 420760 848750 1563600 688190 27497 583070 661570 403560 970210 0 988830 432170 868270 1478700 704660 28674 573780 618560 2 2 0 2 2 2 2 2 1 2 2 1733300000 775670000 957670000 18306 104 16813 92870;92871;92872;92873;92874 112355;112356;112357;112358;112359;112360 112358 6 TAAGLMHTFNAHAATDITGFGILGHAQNLAK Oxidation (M) 3164.5826 0.582551 1127 P49903;P49903-4;P49903-3 SEPHS1 Selenide, water dikinase 1 yes no 0 0 1 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 61.744 61.414 5 1.8164E-20 20202 20211116_3429_TMUAki_TMT10x_P_F2 128.06 102.56 25877000 42511000 954080 38442000 35502000 59540000 33910000 46663000 43941000 42785000 40959000 24101000 39652000 3169300 39820000 34059000 59065000 34790000 47977000 44157000 41945000 39604000 7 7 7 7 7 7 7 7 7 7 7 18634000 29592000 568260 27004000 27759000 50565000 26556000 32817000 31328000 30382000 28408000 17355000 27603000 2202300 28083000 26620000 49660000 27148000 34188000 31558000 29773000 27495000 5 5 5 5 5 5 5 5 5 5 5 7242100 12919000 385820 11439000 7743400 8975800 7353600 13846000 12613000 12402000 12551000 6746000 12049000 967010 11737000 7438300 9405300 7642200 13789000 12599000 12172000 12110000 2 2 2 2 2 2 2 2 2 2 2 3601300000 2528600000 1072700000 18307 1127 16814 92875;92876;92877 112361;112362;112363;112364;112365;112366;112367 112362 1487 7 TAAGLMHTFNAHAATDITGFGILGHAQNLAK Unmodified 3148.5876 0.58763638 1127 P49903;P49903-4;P49903-3 SEPHS1 Selenide, water dikinase 1 yes no 0 0 0 0 By MS/MS 4 0 1 1 68.432 68.253 5 2.6386E-57 22339 20211116_3442_TMUAki_TMT10x_S_F4 210.56 195.43 4622100 8193100 119810 7947200 6248900 4687600 5331600 4096900 3312700 4001800 5820800 4304500 7644100 517650 8076100 5975900 4963200 5393500 4192500 3547400 3912300 5537500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4622100 8193100 119810 7947200 6248900 4687600 5331600 4096900 3312700 4001800 5820800 4304500 7644100 517650 8076100 5975900 4963200 5393500 4192500 3547400 3912300 5537500 2 2 2 2 2 2 2 2 2 2 2 1583200000 0 1583200000 18308 1127 16814 92878 112368;112369 112368 2 TAAKGEAAAERPGEAAVASSPSK Unmodified 2155.0869 0.086924112 857 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate yes yes 0 0 0 2 By MS/MS 4.5 0.5 2 2 4 32.404 32.389 4;5 1.3065E-56 7606 20211116_3433_TMUAki_TMT10x_P_F5 226.7 207.75 5165500 9270800 129720 7452200 22633000 15990000 9192400 6537600 9348200 5709200 9177600 4810500 8643900 787610 7858600 21371000 15550000 10032000 7099200 9497300 5610000 8858600 4 4 2 4 4 4 4 4 4 4 4 5165500 9270800 129720 7452200 22633000 15990000 9192400 6537600 9348200 5709200 9177600 4810500 8643900 787610 7858600 21371000 15550000 10032000 7099200 9497300 5610000 8858600 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1819200000 1819200000 0 18309 857 16815 92879;92880;92881;92882 112370;112371;112372;112373 112372 4 TAANLVVETGQDGVQIR Unmodified 1769.9272 0.92717599 1938 Q5T3I0;Q5T3I0-3;Q5T3I0-2 GPATCH4 G patch domain-containing protein 4 yes no 0 0 0 0 By MS/MS 3 0 1 1 55.067 54.871 3 0.00016072 18047 20211116_3430_TMUAki_TMT10x_P_F3 72.207 52.111 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18310 1938 16816 92883 112374 112374 1 TAAPTVCLLVLSQAEK Unmodified 1699.9179 0.91785686 2972 Q9NVI1;Q9NVI1-2;Q9NVI1-1 FANCI Fanconi anemia group I protein yes no 0 0 0 0 By MS/MS 8 0 1 1 73.444 73.476 3 0.081617 23786 20211116_3436_TMUAki_TMT10x_P_F8 28.723 12.832 4695000 8544700 160280 7059000 4280400 8646500 4727600 5146200 4587800 4984300 5779900 4372700 7967600 532810 7330000 4125200 8631900 4767700 5404100 4715700 4874600 5538800 1 1 1 1 1 1 1 1 1 1 1 4695000 8544700 160280 7059000 4280400 8646500 4727600 5146200 4587800 4984300 5779900 4372700 7967600 532810 7330000 4125200 8631900 4767700 5404100 4715700 4874600 5538800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 674250000 674250000 0 18311 2972 16817 92884 112375 112375 1 TAAQCLEHYEFLLDK Unmodified 1836.8716 0.87163495 2574 Q99459 CDC5L Cell division cycle 5-like protein yes yes 0 0 0 0 By MS/MS By MS/MS 5 1.35 2 2 3 2 2 6 5 69.165 69.14 3 2.9952E-14 21677 20211116_3445_TMUAki_TMT10x_S_F6 144.05 125.69 64035000 110560000 665440 105170000 80083000 83756000 78547000 73728000 68859000 75345000 85756000 59625000 103140000 5868100 107350000 76770000 86420000 79454000 75516000 71076000 73519000 82202000 14 14 10 14 14 14 14 14 14 14 14 11965000 21194000 238500 19340000 12744000 23256000 14780000 13643000 12243000 12778000 14958000 11142000 19769000 1225200 19919000 12285000 23234000 14807000 14331000 12662000 12515000 14345000 3 3 3 3 3 3 3 3 3 3 3 52070000 89366000 426940 85825000 67339000 60501000 63767000 60085000 56617000 62567000 70798000 48483000 83375000 4643000 87427000 64485000 63187000 64647000 61185000 58414000 61004000 67857000 11 11 7 11 11 11 11 11 11 11 11 6277200000 2084600000 4192600000 18312 2574 16818 92885;92886;92887;92888;92889;92890;92891;92892;92893;92894;92895 112376;112377;112378;112379;112380;112381;112382;112383;112384;112385;112386;112387;112388;112389;112390;112391;112392 112389 17 TAASGIPYHSEVPVSLK Unmodified 1754.9203 0.9202997 1475 Q01082 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 49.937 50.504 3 2.875E-11 15499 20211116_3435_TMUAki_TMT10x_P_F7 133.96 97.325 4803400 8626300 89779 9839100 7754200 9595500 5283100 9069400 9373500 7726900 7341100 4473100 8053800 523230 9948200 7378400 9778500 5614700 9207500 9284800 7601800 7144600 2 2 2 2 2 2 2 2 2 2 2 2325800 4063900 61305 4893900 5635300 7499800 3586600 4375200 4435500 3628200 3372300 2166000 3795200 296310 4973000 5355600 7409400 3771400 4583700 4437500 3574300 3286100 1 1 1 1 1 1 1 1 1 1 1 2477500 4562400 28474 4945200 2118900 2095700 1696500 4694200 4937900 4098700 3968800 2307000 4258600 226920 4975300 2022800 2369100 1843300 4623800 4847300 4027500 3858500 1 1 1 1 1 1 1 1 1 1 1 733500000 468660000 264850000 18313 1475 16819 92896;92897 112393;112394 112393 2 TAATSVPAYEPLDSLDR Unmodified 1804.8843 0.88430813 2562 Q96T37;Q96T37-4;Q96T37-2;Q96T37-3 RBM15 Putative RNA-binding protein 15 yes no 0 0 0 0 By MS/MS 3 0 1 1 59.1 58.854 3 6.2808E-05 19687 20211116_3430_TMUAki_TMT10x_P_F3 81.428 62.595 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18314 2562 16820 92898 112395 112395 1 TACGFCFVEYYSR Unmodified 1658.6857 0.68574843 1174 P52298;P52298-2 NCBP2 Nuclear cap-binding protein subunit 2 yes no 0 0 0 0 By MS/MS 8 0 1 1 65.517 65.673 2 2.0168E-11 20500 20211116_3436_TMUAki_TMT10x_P_F8 149.23 98.774 2222700 4036900 0 3311500 2351300 5353700 2744800 2612800 2110900 2876000 2844100 2069400 3764200 172680 3460100 2263600 5266400 2744000 2802700 2201300 2798000 2720900 1 1 0 1 1 1 1 1 1 1 1 2222700 4036900 0 3311500 2351300 5353700 2744800 2612800 2110900 2876000 2844100 2069400 3764200 172680 3460100 2263600 5266400 2744000 2802700 2201300 2798000 2720900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 523870000 523870000 0 18315 1174 16821 92899 112396 112396 1 TACNVEEAFINTAK Unmodified 1566.7348 0.73480712 2297 Q8WUD1;Q8WUD1-2 RAB2B Ras-related protein Rab-2B yes no 0 0 0 0 By MS/MS 4 0 1 1 61.205 61.079 3 0.0015369 19448 20211116_3442_TMUAki_TMT10x_S_F4 63.631 45.493 2607500 3945500 0 4129900 2547500 2401500 2474000 3102400 2860000 2961800 3052300 2427300 3682200 147910 4174300 2436400 2568900 2525300 3114700 2899500 2898500 2938500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2607500 3945500 0 4129900 2547500 2401500 2474000 3102400 2860000 2961800 3052300 2427300 3682200 147910 4174300 2436400 2568900 2525300 3114700 2899500 2898500 2938500 1 1 0 1 1 1 1 1 1 1 1 173590000 0 173590000 18316 2297 16822 92900 112397 112397 1 TADEVPLK Unmodified 871.4651 0.46509784 3032 Q9NZI8 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 40.177 40.125 2 0.002907 13190 20211116_3441_TMUAki_TMT10x_S_F3 103.83 41.871 2590000 4488900 22246 4303700 2855100 2338300 3053300 2436500 2594400 2409800 3515300 2411700 4187900 239180 4374200 2743900 2505500 3072500 2471500 2692100 2354600 3362600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2590000 4488900 22246 4303700 2855100 2338300 3053300 2436500 2594400 2409800 3515300 2411700 4187900 239180 4374200 2743900 2505500 3072500 2471500 2692100 2354600 3362600 2 2 2 2 2 2 2 2 2 2 2 154330000 0 154330000 18317 3032 16823 92901;92902 112398;112399 112398 2 TADGIVSHLK Unmodified 1039.5662 0.56620887 868 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 40.254 40.417 3 2.2265E-05 9837 20211116_3434_TMUAki_TMT10x_P_F6 100.48 37.193 407890 666590 4361 682510 438370 371620 426820 402230 448040 368500 573590 379820 622060 38308 690500 420300 398450 434200 406410 459330 361290 549440 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 407890 666590 4361 682510 438370 371620 426820 402230 448040 368500 573590 379820 622060 38308 690500 420300 398450 434200 406410 459330 361290 549440 1 1 1 1 1 1 1 1 1 1 1 71138000 0 71138000 18318 868 16824 92903;92904;92905 112400;112401;112402 112401 3 TADKLQEFLQTLR Unmodified 1561.8464 0.84640648 2972 Q9NVI1;Q9NVI1-2;Q9NVI1-1;Q9NVI1-4 FANCI Fanconi anemia group I protein yes no 0 0 0 1 By MS/MS 5 3 1 1 2 76.209 76.102 3 7.6391E-07 26162 20211116_3429_TMUAki_TMT10x_P_F2 119 92.851 3853900 5763600 0 4921200 3664400 6270800 4511500 2934200 3715100 3883300 3962700 3588000 5374900 261910 5100100 3531300 6230000 4507300 3180100 3823100 3753500 3815000 1 1 0 1 1 1 1 1 1 1 1 3853900 5763600 0 4921200 3664400 6270800 4511500 2934200 3715100 3883300 3962700 3588000 5374900 261910 5100100 3531300 6230000 4507300 3180100 3823100 3753500 3815000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 411610000 411610000 0 18319 2972 16825 92906;92907 112403;112404 112403 2 TAEAIIR Unmodified 772.4443 0.44430282 1931 Q5SW79;Q5SW79-2;Q5SW79-3 CEP170 Centrosomal protein of 170 kDa yes no 0 0 0 0 By MS/MS 3 0 1 1 33.605 33.365 2 0.034121 10379 20211116_3441_TMUAki_TMT10x_S_F3 77.741 8.565 412500 685310 3650.8 668590 402040 370530 432110 385280 427020 395280 560710 384110 639410 37455 678800 386470 396190 436580 391290 439380 385640 536750 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 412500 685310 3650.8 668590 402040 370530 432110 385280 427020 395280 560710 384110 639410 37455 678800 386470 396190 436580 391290 439380 385640 536750 1 1 1 1 1 1 1 1 1 1 1 13556000 0 13556000 18320 1931 16826 92908 112405 112405 1 TAECTQYQQILHR Unmodified 1646.7835 0.78348864 313 O75177;O75177-2 SS18L1 Calcium-responsive transactivator yes no 0 0 0 0 By MS/MS 5 0 1 1 37.043 37.016 3 3.2823E-06 9545 20211116_3433_TMUAki_TMT10x_P_F5 105.65 91.395 564960 831200 0 1181100 1551700 1359700 769140 769960 923140 691700 799480 525880 776910 41998 1182900 1467000 1360900 825860 810260 928010 678770 775060 1 1 0 1 1 1 1 1 1 1 1 564960 831200 0 1181100 1551700 1359700 769140 769960 923140 691700 799480 525880 776910 41998 1182900 1467000 1360900 825860 810260 928010 678770 775060 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 60130000 60130000 0 18321 313 16827 92909 112406 112406 1 TAEELMNFSKGEENLMDAQVK Oxidation (M) 2399.0985 0.098476355 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 1 1 By MS/MS By MS/MS 4.43 0.904 1 3 2 1 5 2 64.602 64.595 3;4 4.2271E-10 20825 20211116_3442_TMUAki_TMT10x_S_F4 109.66 94.136 40665000 69501000 368140 64362000 52213000 70973000 56083000 33448000 27642000 38368000 49644000 37865000 64833000 3437500 66122000 50182000 71051000 55805000 36049000 30146000 37270000 47208000 10 10 8 10 10 10 10 10 10 10 10 29134000 48049000 307180 46065000 37174000 57945000 43137000 23599000 19720000 26989000 34619000 27129000 44828000 2814300 47312000 35812000 57526000 42719000 25828000 21615000 26219000 32935000 7 7 7 7 7 7 7 7 7 7 7 11531000 21452000 60964 18297000 15039000 13028000 12946000 9849800 7922000 11380000 15025000 10737000 20005000 623180 18810000 14370000 13526000 13086000 10221000 8531100 11051000 14274000 3 3 1 3 3 3 3 3 3 3 3 5278800000 3918900000 1359900000 18322 1146 16828 92910;92911;92912;92913;92914;92915;92916 112407;112408;112409;112410;112411;112412;112413;112414;112415 112414 1516;1517 9 TAEELMNFSKGEENLMDAQVK 2 Oxidation (M) 2415.0934 0.093390977 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 2 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 57.167 57.27 4 1.1476E-07 17802 20211116_3442_TMUAki_TMT10x_S_F4 95.094 74.469 22814000 40263000 144640 35170000 29060000 40078000 25817000 50236000 53667000 42262000 37689000 21242000 37551000 1673400 36313000 27784000 40754000 27219000 50325000 52811000 41604000 36852000 7 7 4 7 7 7 7 7 7 7 7 9802100 15905000 72729 14364000 14809000 24342000 13515000 17538000 18607000 14809000 14829000 9126500 14835000 853300 14911000 14165000 24029000 13934000 18093000 18572000 14576000 14422000 3 3 2 3 3 3 3 3 3 3 3 13012000 24358000 71906 20807000 14251000 15736000 12302000 32698000 35060000 27453000 22860000 12116000 22715000 820120 21401000 13619000 16725000 13285000 32232000 34239000 27028000 22430000 4 4 2 4 4 4 4 4 4 4 4 3725200000 2020300000 1704900000 18323 1146 16828 92917;92918;92919;92920 112416;112417;112418;112419;112420;112421;112422 112419 1516;1517 7 TAEELMNFSKGEENLMDAQVK Unmodified 2383.1036 0.10356173 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 1 By MS/MS 5 0 1 1 72.459 72.513 3 1.2538E-14 23899 20211116_3433_TMUAki_TMT10x_P_F5 139 123.58 3526900 5125800 39826 5550800 3563200 3533200 4909900 826990 752510 1076300 3156400 3284200 4784500 330030 5602500 3452800 3663000 4781200 984860 1032800 1040900 2970400 1 1 1 1 1 1 1 1 1 1 1 3526900 5125800 39826 5550800 3563200 3533200 4909900 826990 752510 1076300 3156400 3284200 4784500 330030 5602500 3452800 3663000 4781200 984860 1032800 1040900 2970400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 591330000 591330000 0 18324 1146 16828 92921 112423 112423 1 TAEEVAALIR Unmodified 1071.5924 0.59242362 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 57.443 57.583 2 8.4901E-05 17445 20211116_3431_TMUAki_TMT10x_P_F4 126.07 73.351 24065000 39159000 45663 39579000 29696000 32672000 24707000 33889000 34382000 29770000 34801000 22407000 36541000 2049100 40244000 28347000 33737000 25622000 34271000 34569000 29244000 33558000 3 3 2 3 3 3 3 3 3 3 3 7245600 11020000 16901 11692000 12868000 16310000 9313500 9925800 9801300 8363800 10538000 6746500 10285000 695210 11949000 12250000 16188000 9648000 10367000 9975900 8232800 10143000 1 1 1 1 1 1 1 1 1 1 1 16820000 28139000 28762 27887000 16828000 16362000 15394000 23963000 24581000 21406000 24263000 15661000 26256000 1353900 28295000 16097000 17550000 15974000 23904000 24593000 21012000 23416000 2 2 1 2 2 2 2 2 2 2 2 1448300000 1170200000 278080000 18325 1997 16829 92922;92923 112424;112425;112426 112424 3 TAEFAPFVVFIAAPTITPGLNEDESLQR Unmodified 3032.5495 0.54950276 143 O14936;O14936-3;O14936-4;O14936-6;O14936-2;O14936-5 CASK Peripheral plasma membrane protein CASK yes no 0 0 0 0 By MS/MS 8 0 2 2 82.261 82.265 3 9.703E-16 26703 20211116_3447_TMUAki_TMT10x_S_F8 125.16 115.97 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18326 143 16830 92924;92925 112427;112428 112427 2 TAEFQVAR Unmodified 920.47158 0.4715802 2941 Q9NSD9;Q9NSD9-2 FARSB Phenylalanine--tRNA ligase beta subunit yes no 0 0 0 0 By MS/MS 3 0 1 1 35.211 34.971 2 0.0052346 11004 20211116_3441_TMUAki_TMT10x_S_F3 95.815 24.519 1056200 1737600 0 1728700 1186000 887940 1204300 865880 1026800 815800 1288900 983430 1621300 86485 1751600 1137500 955940 1215100 879990 1061700 798820 1235200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1056200 1737600 0 1728700 1186000 887940 1204300 865880 1026800 815800 1288900 983430 1621300 86485 1751600 1137500 955940 1215100 879990 1061700 798820 1235200 1 1 0 1 1 1 1 1 1 1 1 23738000 0 23738000 18327 2941 16831 92926 112429 112429 1 TAENATSGETLEENEAGD Unmodified 1836.7497 0.74972472 3217 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 4 2 2 39.342 39.342 2;3 4.1845E-31 9718 20211116_3428_TMUAki_TMT10x_P_F1 191.26 188.64 419170 723050 0 819310 2615200 1118400 678100 572320 701090 472400 716930 390170 675040 50945 833510 2457900 1108600 789830 606460 712800 465490 691110 2 2 0 2 2 2 2 2 2 2 2 419170 723050 0 819310 2615200 1118400 678100 572320 701090 472400 716930 390170 675040 50945 833510 2457900 1108600 789830 606460 712800 465490 691110 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 344990000 344990000 0 18328 3217 16832 92927;92928;92929;92930 112430;112431;112432;112433 112431 4 TAESQTPTPSATSFFSGK Unmodified 1842.8636 0.86357268 1242 P55265;P55265-5;P55265-4;P55265-3;P55265-2 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 0 0 By MS/MS By MS/MS 6.4 0.8 1 1 3 4 1 56.956 57.337 2;3 1.9015E-30 18308 20211116_3435_TMUAki_TMT10x_P_F7 177.38 156.71 22543000 36798000 622560 40741000 39108000 44538000 26642000 27554000 27139000 24879000 32144000 20995000 34352000 2681200 41341000 37223000 44757000 27691000 28792000 27765000 24409000 30853000 4 4 4 4 4 4 4 4 4 4 4 16076000 25065000 322000 29825000 32823000 37651000 21323000 18490000 19369000 16617000 21971000 14971000 23406000 1867400 30207000 31202000 37443000 22169000 19710000 19882000 16307000 21114000 3 3 3 3 3 3 3 3 3 3 3 6467400 11733000 300550 10917000 6285000 6887600 5318900 9063800 7769800 8261900 10173000 6024100 10945000 813740 11134000 6020300 7314000 5521600 9081600 7882400 8102000 9739300 1 1 1 1 1 1 1 1 1 1 1 3935700000 2463500000 1472100000 18329 1242 16833 92931;92932;92933;92934;92935 112434;112435;112436;112437 112436 4 TAFDDAIAELDTLNEDSYK Unmodified 2129.9641 0.96407459 1331 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 1.46 0.499 7 6 5 8 75.569 75.557 2;3;4 8.8967E-134 26549 20211116_3428_TMUAki_TMT10x_P_F1 389.07 362.36 117190000 167600000 277410 234450000 87874000 96443000 113010000 47919000 53029000 60075000 107420000 109100000 156640000 7475700 232390000 84771000 105670000 111460000 51534000 58503000 58172000 101940000 19 19 12 19 19 19 19 19 19 19 19 72854000 100670000 186860 145300000 42088000 64634000 56538000 28472000 31463000 35055000 63982000 67821000 94103000 3916000 143880000 40609000 70008000 55817000 30971000 34259000 33965000 60714000 5 5 3 5 5 5 5 5 5 5 5 44334000 66935000 90551 89144000 45786000 31809000 56470000 19447000 21566000 25020000 43439000 41279000 62540000 3559700 88516000 44162000 35664000 55641000 20563000 24243000 24206000 41227000 14 14 9 14 14 14 14 14 14 14 14 23018000000 13908000000 9109700000 18330 1331 16834 92936;92937;92938;92939;92940;92941;92942;92943;92944;92945;92946;92947;92948 112438;112439;112440;112441;112442;112443;112444;112445;112446;112447;112448;112449;112450;112451;112452;112453;112454;112455;112456;112457;112458;112459 112440 22 TAFDEAIAELDTLNEDSYK Unmodified 2143.9797 0.97972465 825 P27348 YWHAQ 14-3-3 protein theta yes yes 0 0 0 0 By MS/MS By MS/MS 1.65 0.726 9 10 1 6 14 60.852 60.829 2;3;4 3.4477E-117 28560 20211116_3439_TMUAki_TMT10x_S_F1 360.2 336.21 142410000 218390000 258100 295360000 108780000 118270000 142950000 63471000 66636000 75011000 135660000 132590000 204070000 9996200 293230000 105080000 130170000 140850000 67644000 73579000 72784000 128730000 23 23 7 23 23 23 23 23 23 23 23 66073000 95730000 134970 130330000 37055000 63792000 48659000 25960000 27664000 32397000 61741000 61519000 89456000 4867300 129520000 35809000 68241000 48101000 28496000 30271000 31375000 58505000 5 5 1 5 5 5 5 5 5 5 5 76339000 122660000 123130 165030000 71730000 54473000 94287000 37512000 38972000 42614000 73922000 71070000 114610000 5128900 163710000 69271000 61932000 92748000 39148000 43308000 41409000 70228000 18 18 6 18 18 18 18 18 18 18 18 33127000000 20706000000 12420000000 18331 825 16835 92949;92950;92951;92952;92953;92954;92955;92956;92957;92958;92959;92960;92961;92962;92963;92964;92965;92966;92967;92968 112460;112461;112462;112463;112464;112465;112466;112467;112468;112469;112470;112471;112472;112473;112474;112475;112476;112477;112478;112479;112480;112481;112482;112483;112484;112485;112486;112487 112467 28 TAFDEAIAELDTLNEESYK Unmodified 2157.9954 0.99537472 895 P31946;P31946-2 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 2.08 1.06 8 11 3 2 1 8 17 67.697 67.686 2;3 3.7805E-71 28094 20211116_3429_TMUAki_TMT10x_P_F2 288.42 265.1 146200000 218730000 337210 291150000 120340000 120970000 149280000 58687000 65722000 79602000 138480000 136120000 204370000 8618100 289360000 116060000 132330000 147320000 63438000 73099000 76882000 131330000 33 33 15 33 33 33 33 33 33 33 33 79289000 106640000 200440 151860000 50301000 72442000 58889000 30525000 32272000 37918000 66539000 73820000 99677000 5530600 150540000 48405000 77756000 58460000 33373000 35212000 36728000 63127000 7 7 3 7 7 7 7 7 7 7 7 66909000 112080000 136770 139280000 70037000 48523000 90395000 28162000 33450000 41684000 71937000 62298000 104690000 3087500 138810000 67654000 54573000 88865000 30066000 37887000 40154000 68203000 26 26 12 26 26 26 26 26 26 26 26 35210000000 19967000000 15243000000 18332 895 16836 92969;92970;92971;92972;92973;92974;92975;92976;92977;92978;92979;92980;92981;92982;92983;92984;92985;92986;92987;92988;92989;92990;92991;92992;92993 112488;112489;112490;112491;112492;112493;112494;112495;112496;112497;112498;112499;112500;112501;112502;112503;112504;112505;112506;112507;112508;112509;112510;112511;112512;112513;112514;112515;112516;112517;112518;112519;112520;112521;112522;112523 112490 36 TAFDEAIAELDTLSEESYK Unmodified 2130.9845 0.98447568 1395 P63104;P63104-2 YWHAZ 14-3-3 protein zeta/delta yes no 0 0 0 0 By MS/MS By MS/MS 2.16 1.35 10 8 3 2 1 1 12 13 75.719 75.702 2;3;4 8.4795E-81 28992 20211116_3439_TMUAki_TMT10x_S_F1 315.21 301.8 118990000 172410000 234760 227990000 98103000 113910000 113380000 55727000 60263000 74029000 120690000 110790000 161090000 8989800 226950000 94412000 121770000 112560000 60143000 65776000 71547000 114560000 22 22 11 22 22 22 22 22 22 22 22 76870000 108370000 141450 144360000 55607000 79986000 56412000 34331000 38435000 47528000 76613000 71571000 101260000 5686800 143770000 53314000 84430000 56623000 37604000 41242000 45874000 72724000 12 12 7 12 12 12 12 12 12 12 12 42120000 64039000 93313 83627000 42495000 33923000 56966000 21396000 21828000 26502000 44080000 39216000 59828000 3303000 83186000 41098000 37343000 55938000 22539000 24534000 25672000 41833000 10 10 4 10 10 10 10 10 10 10 10 28410000000 16787000000 11623000000 18333 1395 16837 92994;92995;92996;92997;92998;92999;93000;93001;93002;93003;93004;93005;93006;93007;93008;93009;93010;93011;93012;93013;93014;93015;93016;93017;93018 112524;112525;112526;112527;112528;112529;112530;112531;112532;112533;112534;112535;112536;112537;112538;112539;112540;112541;112542;112543;112544;112545;112546;112547;112548;112549;112550 112540 27 TAFQEALDAAGDK Unmodified 1335.6307 0.63065962 607 P10599;P10599-2 TXN Thioredoxin yes no 0 0 0 0 By MS/MS By MS/MS 4 1.41 4 4 4 4 4 10 10 62.515 62.418 2;3 1.4102E-36 19435 20211116_3431_TMUAki_TMT10x_P_F4 274.84 232.86 197720000 299350000 2855900 465040000 167620000 180760000 171000000 119300000 113810000 122870000 212280000 184120000 279940000 18058000 458470000 160940000 200300000 171510000 124510000 121780000 119860000 201730000 28 28 21 28 28 28 28 28 28 28 28 82743000 121680000 1262100 185040000 89496000 113440000 77206000 50808000 48668000 51697000 86864000 77051000 113780000 8043900 183230000 85575000 118570000 78073000 54845000 52116000 50453000 82612000 14 14 11 14 14 14 14 14 14 14 14 114980000 177670000 1593700 280000000 78126000 67324000 93796000 68496000 65144000 71178000 125410000 107070000 166160000 10014000 275240000 75369000 81730000 93435000 69663000 69665000 69405000 119120000 14 14 10 14 14 14 14 14 14 14 14 18451000000 10317000000 8133600000 18334 607 16838 93019;93020;93021;93022;93023;93024;93025;93026;93027;93028;93029;93030;93031;93032;93033;93034;93035;93036;93037;93038 112551;112552;112553;112554;112555;112556;112557;112558;112559;112560;112561;112562;112563;112564;112565;112566;112567;112568;112569;112570;112571;112572;112573;112574;112575;112576;112577;112578;112579 112557 29 TAGQPEGGPGADFGQSCFPAEAGR Unmodified 2363.0237 0.023671928 1729 Q14694;Q14694-3;Q14694-2 USP10 Ubiquitin carboxyl-terminal hydrolase 10 yes no 0 0 0 0 By MS/MS 3 0 1 1 50.933 50.832 3 2.354E-56 16369 20211116_3430_TMUAki_TMT10x_P_F3 204.8 201.16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18335 1729 16839 93039 112580 112580 1 TAGTICLETFK Unmodified 1239.6169 0.61692381 681 P15170-3;P15170-2;P15170;Q8IYD1 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes no 0 0 0 0 By MS/MS By matching 6 0 2 1 1 58.825 58.874 3 0.022239 17088 20211116_3434_TMUAki_TMT10x_P_F6 52.837 33.225 1786500 3205900 0 3241000 3246400 4278900 2247200 2090600 2127700 2205600 2233600 1663100 2991600 130600 3319400 3085200 4245800 2328000 2239400 2173500 2149300 2151400 1 1 0 1 1 1 1 1 1 1 1 1786500 3205900 0 3241000 3246400 4278900 2247200 2090600 2127700 2205600 2233600 1663100 2991600 130600 3319400 3085200 4245800 2328000 2239400 2173500 2149300 2151400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 560360000 331200000 229160000 18336 681 16840 93040;93041 112581 112581 1 TAGTICLETFKDFPQMGR Oxidation (M) 2086.9816 0.9815961 681 P15170-3;P15170-2;P15170;Q8IYD1 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes no 0 0 1 1 By MS/MS 8 0 1 1 62.123 62.311 3 0.0001952 19062 20211116_3436_TMUAki_TMT10x_P_F8 73.279 62.418 3570200 6810900 0 4082400 5950800 15187000 7451300 11729000 11618000 10184000 7798600 3323900 6345100 286950 4523500 5740900 14709000 7608700 12054000 11502000 10009000 7641200 2 2 0 2 2 2 2 2 2 2 2 3570200 6810900 0 4082400 5950800 15187000 7451300 11729000 11618000 10184000 7798600 3323900 6345100 286950 4523500 5740900 14709000 7608700 12054000 11502000 10009000 7641200 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 590610000 590610000 0 18337 681 16841 93042 112582;112583 112582 764 2 TAGTLFGEGFR Unmodified 1154.572 0.57202253 2973;1941 Q9NVI7;Q9NVI7-2;Q9NVI7-3;Q5T9A4-2;Q5T9A4;Q5T9A4-3 ATAD3A;ATAD3B ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B no no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 54.981 55.71 2 4.8416E-14 16181 20211116_3445_TMUAki_TMT10x_S_F6 150.81 125.89 12491000 20628000 204560 20098000 18799000 26126000 16406000 16574000 14599000 15354000 16998000 11632000 19246000 1314600 20631000 17978000 26029000 16711000 17297000 15016000 15046000 16323000 2 2 2 2 2 2 2 2 2 2 2 12491000 20628000 204560 20098000 18799000 26126000 16406000 16574000 14599000 15354000 16998000 11632000 19246000 1314600 20631000 17978000 26029000 16711000 17297000 15016000 15046000 16323000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1064400000 1064400000 0 18338 2973;1941 16842 93043;93044;93045 112584;112585;112586;112587 112587 4 TAGTSFMMTPYVVTR 2 Oxidation (M) 1692.7851 0.78512813 1037 P45983;P53779;P45983-3;P53779-2;P45983-2;P45983-5;P53779-3;P45983-4 MAPK8;MAPK10 Mitogen-activated protein kinase 8;Mitogen-activated protein kinase 10 yes no 0 0 2 0 By MS/MS 8 0 1 1 46.147 46.283 3 0.0055948 12610 20211116_3436_TMUAki_TMT10x_P_F8 61.641 52.591 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18339 1037 16843 93046 112588 112588 1343;1344 1 TAGVKVETTEDLVAK Unmodified 1559.8407 0.8406524 968 P38117;P38117-2 ETFB Electron transfer flavoprotein subunit beta yes no 0 0 0 1 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 48.239 48.388 3 3.902E-24 12921 20211116_3444_TMUAki_TMT10x_S_F5 192.96 155.01 18318000 30044000 95407 30556000 26839000 27948000 20682000 23600000 21839000 20385000 24750000 17055000 28036000 1622400 31097000 25578000 28534000 21337000 24118000 22270000 20041000 23785000 6 6 3 6 6 6 6 6 6 6 6 8424000 13598000 21617 14491000 15274000 17832000 10726000 10513000 10140000 9374200 11205000 7843700 12692000 810490 14770000 14532000 17795000 11100000 11024000 10379000 9202300 10776000 3 3 2 3 3 3 3 3 3 3 3 9893500 16446000 73790 16065000 11565000 10116000 9956000 13087000 11699000 11011000 13545000 9211600 15344000 811900 16327000 11046000 10739000 10237000 13094000 11891000 10839000 13009000 3 3 1 3 3 3 3 3 3 3 3 1505800000 1152700000 353040000 18340 968 16844 93047;93048;93049;93050;93051 112589;112590;112591;112592;112593;112594 112593 6 TAGYPNVNIHNFTTSWR Unmodified 1976.9493 0.94930842 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 57.7 57.383 3 9.6128E-12 19094 20211116_3430_TMUAki_TMT10x_P_F3 138.66 122.17 6133800 10525000 108720 10080000 9236700 10784000 8385100 7439100 6878200 6994300 7987400 5712000 9819600 653320 10326000 8841700 10867000 8503300 7719100 7102700 6849300 7670800 3 3 3 3 3 3 3 3 3 3 3 4101700 6654100 94607 6625000 6580600 8868200 6241900 4724000 4472900 4330100 5362700 3819800 6208900 462950 6794200 6307000 8802800 6294400 5000400 4659400 4245200 5145600 2 2 2 2 2 2 2 2 2 2 2 2032100 3871200 14115 3455300 2656100 1915400 2143200 2715200 2405300 2664200 2624800 1892200 3610700 190370 3531300 2534800 2064300 2208900 2718700 2443300 2604100 2525200 1 1 1 1 1 1 1 1 1 1 1 628860000 423570000 205290000 18341 1475 16845 93052;93053 112595;112596;112597 112596 3 TAHLDEEVNKGDILVVATGQPEMVK Oxidation (M) 2708.3691 0.36909555 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 1 1 By MS/MS By MS/MS 4.86 0.639 2 4 1 5 2 59.365 59.495 4;5 4.3944E-12 18248 20211116_3431_TMUAki_TMT10x_P_F4 118.22 105.91 43737000 72719000 791130 72809000 53746000 80632000 51599000 60195000 58132000 55956000 59355000 40728000 67855000 4357200 74388000 51519000 81201000 52653000 62107000 58897000 54824000 57220000 16 16 11 16 16 16 16 16 16 16 16 29763000 47537000 672110 47606000 38139000 65027000 36847000 38949000 37709000 36732000 39099000 27716000 44358000 3066100 48822000 36568000 64584000 37470000 40850000 38374000 35965000 37674000 11 11 7 11 11 11 11 11 11 11 11 13975000 25182000 119010 25203000 15607000 15606000 14752000 21246000 20423000 19225000 20256000 13013000 23497000 1291100 25566000 14951000 16617000 15184000 21257000 20523000 18859000 19546000 5 5 4 5 5 5 5 5 5 5 5 6981600000 4717900000 2263700000 18342 629 16846 93054;93055;93056;93057;93058;93059;93060 112598;112599;112600;112601;112602;112603;112604;112605;112606;112607;112608;112609;112610;112611;112612;112613 112600 656 16 TAHLDEEVNKGDILVVATGQPEMVK Unmodified 2692.3742 0.37418093 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 1 By MS/MS 5 0 1 1 63.722 63.79 4 1.4316E-29 19176 20211116_3444_TMUAki_TMT10x_S_F5 171.58 159.95 3557900 6361600 26453 6598400 4317500 3568400 3751100 3125100 2865000 2975000 4321900 3312900 5937000 324550 6669400 4126800 3812200 3807100 3195300 3005100 2911700 4124100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3557900 6361600 26453 6598400 4317500 3568400 3751100 3125100 2865000 2975000 4321900 3312900 5937000 324550 6669400 4126800 3812200 3807100 3195300 3005100 2911700 4124100 2 2 1 2 2 2 2 2 2 2 2 921420000 0 921420000 18343 629 16846 93061 112614;112615 112615 2 TAICNLILGNPPSK Unmodified 1496.8021 0.80209882 2935 Q9NRX1 PNO1 RNA-binding protein PNO1 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.707 1 2 1 1 3 67.621 67.393 3 3.3204E-05 23234 20211116_3430_TMUAki_TMT10x_P_F3 97.836 69.867 7397500 12563000 159940 12331000 8940300 9809500 8989100 8051900 7072900 6816700 9027800 6889000 11722000 783970 12558000 8583300 10109000 9056200 8238400 7348600 6708400 8648300 3 3 3 3 3 3 3 3 3 3 3 2705900 4628300 43116 4661500 3416300 4815000 3420900 2869500 2421500 2449900 3067900 2519800 4318800 274470 4755500 3278400 4852000 3438800 3003100 2530200 2410000 2939500 1 1 1 1 1 1 1 1 1 1 1 4691500 7934800 116830 7669500 5524000 4994500 5568300 5182400 4651300 4366800 5959900 4369200 7403000 509500 7802900 5304900 5257200 5617400 5235300 4818500 4298400 5708800 2 2 2 2 2 2 2 2 2 2 2 1246000000 698760000 547200000 18344 2935 16847 93062;93063;93064;93065 112616;112617;112618;112619 112616 4 TAIGALK Unmodified 672.41703 0.41702544 3195 Q9UNM6;Q9UNM6-2 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 39.704 40.337 2 0.022593 10064 20211116_3445_TMUAki_TMT10x_S_F6 81.635 20.673 705600 1200400 0 1100800 886490 730880 939360 683070 756240 695830 929850 656960 1119800 58666 1124500 851180 766320 944400 697300 783520 679060 891620 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 705600 1200400 0 1100800 886490 730880 939360 683070 756240 695830 929850 656960 1119800 58666 1124500 851180 766320 944400 697300 783520 679060 891620 1 1 0 1 1 1 1 1 1 1 1 29999000 0 29999000 18345 3195 16848 93066;93067 112620;112621 112620 2 TAIHEVMEQGR Oxidation (M) 1285.6085 0.60848439 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 1 0 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 27.677 27.52 2;3 7.5894E-06 8213 20211116_3441_TMUAki_TMT10x_S_F3 110.66 81.897 439020 678360 13924 662790 581960 677250 481440 424060 515520 454450 551740 408860 632920 39453 677470 556160 683360 494650 444840 524240 442580 531120 5 5 3 5 5 5 5 5 5 5 5 333740 498860 13924 489910 429100 543540 357310 324490 356630 332020 393590 310830 465460 39453 501220 410320 545490 366170 341200 364150 323950 378540 4 4 3 4 4 4 4 4 4 4 4 105280 179500 0 172880 152850 133710 124130 99570 158890 122430 158140 98030 167470 0 176250 145840 137870 128490 103640 160100 118630 152580 1 1 0 1 1 1 1 1 1 1 1 36135000 16725000 19410000 18346 799 16849 93068;93069;93070;93071 112622;112623;112624;112625;112626;112627 112626 946 6 TAIHEVMEQGR Unmodified 1269.6136 0.61356977 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 0 By MS/MS 4.33 0.471 2 1 3 32.818 32.815 2;3 8.058E-09 7502 20211116_3431_TMUAki_TMT10x_P_F4 154.66 140.7 1358100 2081700 23737 2446300 3493200 2481800 1717600 1247400 1400000 1142900 1752300 1264700 1943800 164620 2470400 3306300 2498300 1825300 1327500 1450700 1120500 1679400 3 3 3 3 3 3 3 3 3 3 3 1358100 2081700 23737 2446300 3493200 2481800 1717600 1247400 1400000 1142900 1752300 1264700 1943800 164620 2470400 3306300 2498300 1825300 1327500 1450700 1120500 1679400 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 223850000 223850000 0 18347 799 16849 93072;93073;93074 112628;112629;112630 112628 3 TAIHEVMEQQTISIAK Oxidation (M) 1813.9244 0.9243988 913 P33993;P33993-3 MCM7 DNA replication licensing factor MCM7 yes no 0 0 1 0 By MS/MS By MS/MS 5.2 0.4 4 1 3 2 44.382 44.536 3 1.6952E-07 11284 20211116_3444_TMUAki_TMT10x_S_F5 108.66 96.297 4072200 7229900 4702.8 8041400 3325800 3578800 3595900 5665200 6565100 5225700 5881100 3791300 6749300 288800 8079500 3193300 3968000 3725300 5641500 6524700 5121800 5694500 4 4 1 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4072200 7229900 4702.8 8041400 3325800 3578800 3595900 5665200 6565100 5225700 5881100 3791300 6749300 288800 8079500 3193300 3968000 3725300 5641500 6524700 5121800 5694500 4 4 1 4 4 4 4 4 4 4 4 458190000 0 458190000 18348 913 16850 93075;93076;93077;93078;93079 112631;112632;112633;112634;112635;112636;112637 112634 1142 7 TAIHEVMEQQTISIAK Unmodified 1797.9295 0.92948418 913 P33993;P33993-3 MCM7 DNA replication licensing factor MCM7 yes no 0 0 0 0 By MS/MS By MS/MS 6 0.707 1 2 1 1 3 52.165 52.411 3 1.1167E-10 14818 20211116_3445_TMUAki_TMT10x_S_F6 127.66 109.25 9844100 15993000 91771 18436000 10278000 10107000 8466100 7279300 6545100 6891000 11535000 9166500 14932000 907740 18510000 9814600 10746000 8622800 7532200 6919600 6746100 10973000 3 3 3 3 3 3 3 3 3 3 3 3068600 4804300 20537 5581500 4904300 5559700 3689500 2359900 2108500 2412600 3731200 2857300 4485800 299260 5638800 4673100 5593300 3757000 2562500 2271800 2354100 3549100 1 1 1 1 1 1 1 1 1 1 1 6775500 11189000 71234 12854000 5373200 4547100 4776600 4919400 4436500 4478400 7803600 6309200 10446000 608480 12871000 5141400 5153100 4865800 4969700 4647800 4392000 7423600 2 2 2 2 2 2 2 2 2 2 2 919320000 338770000 580550000 18349 913 16850 93080;93081;93082;93083 112638;112639;112640;112641 112640 4 TAITVEHLAIK Unmodified 1194.6972 0.69722304 2918 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 48.024 48.304 3 2.1485E-11 13101 20211116_3445_TMUAki_TMT10x_S_F6 167.12 113.64 30656000 48534000 407520 54686000 53249000 49140000 35706000 40887000 36242000 34510000 44790000 28545000 45311000 3086900 55272000 50631000 50217000 37152000 41796000 37150000 33967000 42943000 10 10 7 10 10 10 10 10 10 10 10 15814000 23319000 257490 26155000 36904000 35853000 21871000 20505000 17679000 17166000 21926000 14726000 21769000 1764000 26627000 35018000 35581000 22841000 21523000 18319000 16903000 21020000 5 5 4 5 5 5 5 5 5 5 5 14842000 25216000 150030 28531000 16345000 13287000 13835000 20381000 18564000 17343000 22864000 13820000 23541000 1322800 28645000 15614000 14636000 14311000 20273000 18831000 17064000 21923000 5 5 3 5 5 5 5 5 5 5 5 3716100000 1727000000 1989100000 18350 2918 16851 93084;93085;93086;93087;93088;93089 112642;112643;112644;112645;112646;112647;112648;112649;112650;112651 112648 10 TALALAIAQELGSK Unmodified 1384.7926 0.79257999 3225 Q9Y265;Q9Y265-2 RUVBL1 RuvB-like 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.42 1.85 4 4 3 1 6 6 79.363 79.331 2;3 2.8985E-33 27472 20211116_3429_TMUAki_TMT10x_P_F2 232.7 203.97 73171000 116140000 781370 109650000 74220000 103540000 90662000 67532000 65005000 77307000 89300000 68130000 108350000 6184900 112230000 71586000 105040000 90309000 70771000 68117000 75100000 85393000 9 9 6 9 9 9 9 9 9 9 9 35675000 58308000 683700 52515000 34601000 60770000 40714000 33954000 33130000 37482000 44285000 33222000 54386000 3579900 54107000 33372000 60796000 40744000 35981000 34432000 36462000 42375000 4 4 4 4 4 4 4 4 4 4 4 37495000 57836000 97664 57134000 39619000 42766000 49948000 33577000 31875000 39825000 45016000 34907000 53964000 2605000 58121000 38214000 44247000 49565000 34790000 33685000 38638000 43018000 5 5 2 5 5 5 5 5 5 5 5 13090000000 6333200000 6757300000 18351 3225 16852 93090;93091;93092;93093;93094;93095;93096;93097;93098;93099;93100;93101 112652;112653;112654;112655;112656;112657;112658;112659;112660;112661 112654 10 TALALEVGDIVK Unmodified 1227.7075 0.70745338 1046 P46109 CRKL Crk-like protein yes yes 0 0 0 0 By MS/MS By MS/MS 4.9 0.831 4 3 3 5 5 71.029 71.018 2;3 2.8575E-16 23512 20211116_3442_TMUAki_TMT10x_S_F4 199.68 163.73 32481000 51869000 77400 48913000 38515000 44465000 37999000 31777000 29958000 32368000 38386000 30242000 48388000 2627700 50042000 36907000 45287000 38322000 32966000 31128000 31588000 36769000 7 7 3 7 7 7 7 7 7 7 7 14748000 22123000 21163 21340000 17039000 25669000 18005000 13747000 13754000 14206000 16446000 13731000 20640000 1155400 21890000 16355000 25615000 18081000 14592000 14274000 13855000 15782000 3 3 1 3 3 3 3 3 3 3 3 17733000 29746000 56237 27574000 21476000 18796000 19994000 18030000 16204000 18162000 21940000 16511000 27748000 1472300 28152000 20552000 19672000 20241000 18374000 16854000 17733000 20987000 4 4 2 4 4 4 4 4 4 4 4 3428500000 1580900000 1847600000 18352 1046 16853 93102;93103;93104;93105;93106;93107;93108;93109;93110;93111 112662;112663;112664;112665;112666;112667;112668;112669;112670 112667 9 TALALEVGELVK Unmodified 1241.7231 0.72310344 1044 P46108 CRK Adapter molecule crk yes yes 0 0 0 0 By MS/MS 5 0 1 1 76.167 76.191 2 1.8823E-15 25379 20211116_3433_TMUAki_TMT10x_P_F5 169.58 123.86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18353 1044 16854 93112 112671 112671 1 TALFEEISR Unmodified 1064.5502 0.55022446 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 0 By matching By MS/MS 4 0 2 1 1 55.945 55.998 2 3.5994E-05 17306 20211116_3442_TMUAki_TMT10x_S_F4 152.79 101.06 3433600 6695000 120690 6335500 3826000 4022800 2999500 6849800 5991500 5652000 6013000 3197900 6245800 402640 6454000 3655100 4304300 3178400 6785900 5965200 5569400 5799900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3433600 6695000 120690 6335500 3826000 4022800 2999500 6849800 5991500 5652000 6013000 3197900 6245800 402640 6454000 3655100 4304300 3178400 6785900 5965200 5569400 5799900 1 1 1 1 1 1 1 1 1 1 1 837740000 450310000 387430000 18354 1723 16855 93113;93114 112672 112672 1 TALHLAVETQER Unmodified 1366.7205 0.72047768 72 O00221 NFKBIE NF-kappa-B inhibitor epsilon yes yes 0 0 0 0 By MS/MS 4 0 1 1 36.552 36.579 3 0.024079 9000 20211116_3431_TMUAki_TMT10x_P_F4 55.291 36.511 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18355 72 16856 93115 112673 112673 1 TALIHDGLAR Unmodified 1065.5931 0.59309232 801 P25398 RPS12 40S ribosomal protein S12 yes yes 0 0 0 0 By MS/MS By MS/MS 3.77 1.8 3 1 3 4 2 7 6 33.687 33.724 2;3 1.9855E-10 8676 20211116_3433_TMUAki_TMT10x_P_F5 195.36 164.13 17306000 27467000 50205 27839000 31462000 29956000 19369000 18164000 20076000 17189000 21574000 16114000 25631000 1562800 28406000 29863000 30122000 20301000 19034000 20446000 16827000 20765000 12 12 6 12 12 12 12 12 12 12 12 13135000 20651000 27529 21146000 27162000 26355000 14875000 14003000 15647000 13083000 16193000 12230000 19271000 1269500 21615000 25734000 26250000 15754000 14833000 15904000 12816000 15604000 9 9 4 9 9 9 9 9 9 9 9 4171200 6816300 22676 6693600 4300000 3601600 4494800 4160500 4428500 4105500 5381400 3883900 6359900 293290 6791000 4129300 3872300 4547000 4200300 4541900 4011900 5161700 3 3 2 3 3 3 3 3 3 3 3 6254100000 4334900000 1919300000 18356 801 16857 93116;93117;93118;93119;93120;93121;93122;93123;93124;93125;93126;93127;93128 112674;112675;112676;112677;112678;112679;112680;112681;112682;112683;112684;112685;112686;112687;112688;112689 112680 16 TALLPSDSVFAEER Unmodified 1533.7675 0.76748745 1738 Q14966;Q14966-5;Q14966-3 ZNF638 Zinc finger protein 638 yes no 0 0 0 0 By MS/MS 3 0 1 1 62.167 61.893 2 5.3825E-06 20937 20211116_3430_TMUAki_TMT10x_P_F3 87.442 70.417 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18357 1738 16858 93129 112690 112690 1 TALPAQSAATLPAR Unmodified 1366.7569 0.75686319 1475 Q01082 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 0 0 0 0 By MS/MS By MS/MS 7.8 0.4 1 4 3 2 40.267 40.543 2;3 2.8001E-43 10244 20211116_3436_TMUAki_TMT10x_P_F8 269.04 254.51 3794600 6018100 54841 7153100 7894600 7288800 5068900 4999600 5211700 4319300 5684500 3533500 5619800 415140 7219200 7501400 7365500 5293800 5178400 5312500 4246500 5469000 7 7 4 7 7 7 7 7 7 7 7 2593500 4173400 20532 4841900 6817200 6321500 3906300 3503300 3610500 2976600 3912000 2414900 3896700 285320 4914400 6464200 6285400 4105400 3688400 3696700 2928800 3764400 5 5 2 5 5 5 5 5 5 5 5 1201100 1844700 34309 2311200 1077400 967270 1162600 1496300 1601200 1342700 1772500 1118600 1723000 129820 2304700 1037300 1080200 1188400 1490100 1615800 1317700 1704600 2 2 2 2 2 2 2 2 2 2 2 478860000 362350000 116510000 18358 1475 16859 93130;93131;93132;93133;93134 112691;112692;112693;112694;112695;112696;112697 112692 7 TALPTSGSSAGELELLAGEVPAR Unmodified 2225.1539 0.15394104 3352 Q9Y6I3;Q9Y6I3-3;Q9Y6I3-1 EPN1 Epsin-1 yes no 0 0 0 0 By MS/MS By matching 3.5 0.5 1 1 1 1 74.191 74.054 3 0.0013502 25908 20211116_3430_TMUAki_TMT10x_P_F3 59.242 47.629 4090800 6377100 68877 6444700 3823900 6980400 4541000 3531600 3422000 3999600 4754400 3809400 5950700 399610 6577900 3688700 7000700 4534000 3778700 3577600 3887000 4545200 2 2 2 2 2 2 2 2 2 2 2 4090800 6377100 68877 6444700 3823900 6980400 4541000 3531600 3422000 3999600 4754400 3809400 5950700 399610 6577900 3688700 7000700 4534000 3778700 3577600 3887000 4545200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 543900000 238690000 305210000 18359 3352 16860 93135;93136 112698;112699 112699 2 TALSEEEEEEREFR Unmodified 1752.7802 0.78023698 2950 Q9NU22 MDN1 Midasin yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 38.215 38.172 3 2.573E-30 11220 20211116_3439_TMUAki_TMT10x_S_F1 216.54 200.75 757210 1293400 1476.3 1495500 1255000 1408800 857970 1393800 1249500 992400 1123300 704980 1207700 63227 1510100 1193000 1440200 903160 1405800 1249500 985770 1087500 2 2 1 2 2 2 2 2 2 2 2 417180 661260 0 749900 940460 1110000 599330 621120 591840 487870 561000 388380 617360 34018 764140 892670 1097600 625530 652190 601330 481970 542130 1 1 0 1 1 1 1 1 1 1 1 340020 632170 1476.3 745650 314550 298770 258640 772670 657640 504530 562260 316610 590310 29209 745980 300290 342580 277630 753660 648190 503800 545350 1 1 1 1 1 1 1 1 1 1 1 67706000 33494000 34213000 18360 2950 16861 93137;93138 112700;112701 112701 2 TALSEEEEEEREFRK Unmodified 1880.8752 0.8752 2950 Q9NU22 MDN1 Midasin yes yes 0 0 0 2 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 38.571 38.451 4 9.1092E-38 10901 20211116_3429_TMUAki_TMT10x_P_F2 249.6 227.76 2686400 4205200 47871 5761400 8692000 6871600 4046400 4640700 5532500 3624400 4945400 2501600 3929700 351450 5784300 8220400 6881700 4393300 4800500 5542500 3581600 4788800 3 3 3 3 3 3 3 3 3 3 3 2160100 3208000 37167 4494400 8337400 6491200 3693600 3522700 4331800 2800800 3870800 2011500 2998200 300240 4524000 7879800 6422900 4009200 3709900 4362600 2765100 3748300 2 2 2 2 2 2 2 2 2 2 2 526290 997210 10704 1267000 354590 380350 352710 1118000 1200700 823590 1074600 490100 931510 51203 1260200 340600 458740 384120 1090700 1179900 816490 1040600 1 1 1 1 1 1 1 1 1 1 1 636280000 568280000 68000000 18361 2950 16862 93139;93140;93141 112702;112703;112704 112703 3 TALTTTISSR Unmodified 1049.5717 0.57168818 2681 Q9BV20;Q9BV20-2 MRI1 Methylthioribose-1-phosphate isomerase yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 2 4 3 3 29.483 29.792 2 2.0562E-05 7074 20211116_3436_TMUAki_TMT10x_P_F8 138.08 112.34 304450 464410 1270 525780 448390 454600 330980 348220 343170 321870 403850 283460 433580 11938 530990 426920 465110 342250 358630 350740 315440 387700 9 9 1 9 9 9 9 9 9 9 9 177330 269040 1270 297580 308060 335010 201110 182110 173350 186070 216530 165110 251150 11938 302130 292620 335540 208730 193000 179100 181570 207540 4 4 1 4 4 4 4 4 4 4 4 127120 195380 0 228200 140340 119590 129870 166110 169820 135790 187320 118360 182430 0 228860 134300 129570 133520 165630 171640 133870 180160 5 5 0 5 5 5 5 5 5 5 5 17530000 12809000 4721300 18362 2681 16863 93142;93143;93144;93145;93146;93147 112705;112706;112707;112708;112709;112710;112711;112712;112713;112714 112708 10 TALVERDDFSSGTSSR Unmodified 1726.8122 0.81220581 1028 P43304 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 35.761 35.653 3 2.6316E-07 8678 20211116_3431_TMUAki_TMT10x_P_F4 107.63 94.86 1849300 2857200 20796 4032000 6357400 4855300 2628400 2643900 3076200 2104700 2812300 1722000 2670500 234480 4042600 6003200 4845700 2874900 2783600 3100500 2077800 2721000 3 3 2 3 3 3 3 3 3 3 3 1616800 2452200 19312 3520400 6105300 4632000 2395600 2300000 2700200 1817800 2437400 1505600 2292200 213550 3532600 5761900 4597800 2633400 2441700 2724300 1795200 2359400 2 2 1 2 2 2 2 2 2 2 2 232490 404980 1483.9 511600 252100 223250 232760 343880 376010 286940 374840 216480 378290 20932 510070 241330 247930 241540 341840 376210 282580 361630 1 1 1 1 1 1 1 1 1 1 1 83589000 61468000 22120000 18363 1028 16864 93148;93149 112715;112716;112717 112715 3 TAMNVNEIFMAIAK 2 Oxidation (M) 1583.7687 0.76874978 1150 P51148;P51148-2 RAB5C Ras-related protein Rab-5C yes no 0 0 2 0 By MS/MS By MS/MS 7.8 0.4 1 4 3 2 74.217 74.215 2;3 0.0012986 24023 20211116_3436_TMUAki_TMT10x_P_F8 69.258 6.5775 14631000 25353000 5558.8 22700000 14682000 27509000 16806000 24901000 26848000 23786000 21870000 13622000 23647000 1068200 23417000 14121000 27670000 17247000 25416000 26697000 23276000 21252000 4 4 1 4 4 4 4 4 4 4 4 7271300 11917000 0 10232000 7007600 15759000 7973100 11644000 12745000 10807000 9898100 6770200 11114000 583050 10640000 6742400 15621000 8184700 12021000 12656000 10590000 9636500 2 2 0 2 2 2 2 2 2 2 2 7360100 13436000 5558.8 12468000 7674000 11750000 8833000 13257000 14102000 12978000 11972000 6852000 12533000 485140 12777000 7378900 12049000 9062200 13395000 14041000 12687000 11615000 2 2 1 2 2 2 2 2 2 2 2 3616700000 2457700000 1159100000 18364 1150 16865 93150;93151;93152;93153;93154 112718;112719;112720;112721 112718 1535;1536 4 TAMNVNEIFMAIAK Oxidation (M) 1567.7738 0.77383516 1150 P51148;P51148-2 RAB5C Ras-related protein Rab-5C yes no 0 0 1 0 By MS/MS By MS/MS 8 0 2 1 1 77.722 77.728 2;3 0.0017277 25473 20211116_3436_TMUAki_TMT10x_P_F8 78.548 13.369 3499000 5973900 0 5237100 3330400 5510400 3917700 2237900 2064200 2751100 3835000 3257800 5571500 268590 5398800 3206900 5523300 3885800 2455900 2243900 2665700 3644600 1 1 0 1 1 1 1 1 1 1 1 3499000 5973900 0 5237100 3330400 5510400 3917700 2237900 2064200 2751100 3835000 3257800 5571500 268590 5398800 3206900 5523300 3885800 2455900 2243900 2665700 3644600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 385320000 385320000 0 18365 1150 16865 93155;93156 112722;112723 112722 1535;1536 2 TAMNVNEIFMAIAK Unmodified 1551.7789 0.77892054 1150 P51148;P51148-2 RAB5C Ras-related protein Rab-5C yes no 0 0 0 0 By MS/MS 2 0 1 1 79.705 79.687 2 1.8209E-13 26340 20211116_3440_TMUAki_TMT10x_S_F2 128.28 102.34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18366 1150 16865 93157 112724 112724 1 TAMVAALSPADINYDETLSTLR Oxidation (M) 2367.1628 0.16279117 1560 Q12756;Q12756-3;Q12756-2;O60333;O60333-3;O60333-2;O60333-4 KIF1A;KIF1B Kinesin-like protein KIF1A;Kinesin-like protein KIF1B yes no 0 0 1 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 2 3 74.141 74.121 3 8.06E-27 23728 20211116_3445_TMUAki_TMT10x_S_F6 169.51 155.92 11842000 18476000 120970 18640000 13800000 16766000 13486000 11741000 10378000 12440000 15217000 11026000 17241000 1017500 18976000 13225000 17083000 13599000 12212000 10866000 12121000 14529000 7 7 5 7 7 7 7 7 7 7 7 4449400 6938700 33537 6639900 4406600 8551700 5080400 4501700 4337300 4607000 5313400 4142700 6473400 351610 6823500 4241100 8503000 5095100 4784600 4479600 4495100 5095500 3 3 2 3 3 3 3 3 3 3 3 7392600 11537000 87430 12000000 9393900 8214300 8405300 7239000 6041200 7833200 9903200 6883400 10767000 665930 12153000 8984100 8579800 8504400 7427100 6386400 7625800 9433700 4 4 3 4 4 4 4 4 4 4 4 1924800000 960850000 963910000 18367 1560 16866 93158;93159;93160;93161;93162 112725;112726;112727;112728;112729;112730;112731;112732 112731 2104 8 TANKDHLVTAYNHLFETK Unmodified 2101.0593 0.059252799 1472 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 0 0 0 1 By MS/MS By MS/MS 3.25 2.82 3 2 1 2 4 4 51.04 50.909 4;5 5.8019E-08 14409 20211116_3428_TMUAki_TMT10x_P_F1 106.67 89.981 26948000 50293000 668350 45120000 61344000 73253000 43044000 51403000 55126000 48758000 44291000 25096000 46909000 3308900 46816000 58398000 72399000 44992000 53286000 55168000 47728000 43061000 10 10 8 10 10 10 10 10 10 10 10 19148000 35761000 609150 32182000 52521000 64366000 36162000 37142000 39838000 35177000 30805000 17833000 33356000 2622600 33565000 49985000 62975000 37650000 39079000 40047000 34437000 29996000 6 6 6 6 6 6 6 6 6 6 6 7799900 14532000 59202 12938000 8822900 8886700 6882500 14260000 15288000 13581000 13486000 7262700 13554000 686280 13251000 8412700 9423900 7342900 14208000 15122000 13292000 13065000 4 4 2 4 4 4 4 4 4 4 4 3822600000 2654100000 1168500000 18368 1472 16867 93163;93164;93165;93166;93167;93168;93169;93170 112733;112734;112735;112736;112737;112738;112739;112740;112741;112742 112734 10 TANKDHLVTAYNHLFETKR Unmodified 2257.1604 0.16036383 1472 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 0 0 0 2 By MS/MS By MS/MS 2.5 0.5 3 3 3 3 46.768 46.548 5;6 3.8277E-12 14167 20211116_3429_TMUAki_TMT10x_P_F2 127.32 114.47 13269000 25540000 103280 23491000 36608000 37884000 18349000 47407000 34852000 32233000 28417000 12355000 23824000 1475800 24325000 34645000 37920000 20078000 47266000 34505000 32105000 27612000 8 8 6 8 8 8 8 8 8 8 8 6754200 12684000 62713 12119000 24444000 31115000 13485000 22979000 17033000 15803000 13751000 6289100 11833000 835660 12687000 23165000 30343000 14361000 23560000 17056000 15730000 13367000 4 4 3 4 4 4 4 4 4 4 4 6514800 12856000 40569 11372000 12164000 6769000 4863900 24428000 17819000 16429000 14665000 6066100 11991000 640090 11637000 11481000 7576600 5716400 23706000 17449000 16375000 14245000 4 4 3 4 4 4 4 4 4 4 4 1185300000 707390000 477950000 18369 1472 16868 93171;93172;93173;93174;93175;93176 112743;112744;112745;112746;112747;112748;112749 112743 7 TAPFDSRFPNQNQTR Unmodified 1777.8496 0.84959437 676 P14854 COX6B1 Cytochrome c oxidase subunit 6B1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 32.376 32.391 3 2.8855E-30 8592 20211116_3428_TMUAki_TMT10x_P_F1 213 188.95 4348500 6996900 74415 9633700 14228000 11742000 7341400 8470400 8831100 5850200 7500800 4049400 6538700 559010 9673300 13473000 11759000 7852900 8698800 8871700 5821600 7276900 5 5 4 5 5 5 5 5 5 5 5 4106600 6568100 72329 9077500 14037000 11584000 7178600 8052200 8404800 5549100 7084100 3824100 6138100 537720 9120800 13291000 11567000 7678100 8290200 8450000 5522600 6874700 4 4 3 4 4 4 4 4 4 4 4 241990 428810 2085.7 556160 191150 158600 162790 418140 426210 301130 416690 225330 400610 21294 552430 182690 191930 174760 408540 421730 298920 402260 1 1 1 1 1 1 1 1 1 1 1 569290000 522140000 47151000 18370 676 16869 93177;93178;93179;93180 112750;112751;112752;112753;112754;112755 112750 6 TAPGALTAKPPLAPKPGTTVASGVTAR Unmodified 2529.4279 0.42787148 1896 Q4KMP7 TBC1D10B TBC1 domain family member 10B yes yes 0 0 0 2 By MS/MS 5 0 1 1 47.281 47.448 4 3.708E-24 12510 20211116_3444_TMUAki_TMT10x_S_F5 141.12 127.53 1237300 2437100 18091 2693700 1202400 1208400 944260 2503200 2379700 2054000 2068900 1152200 2275000 118950 2707700 1147500 1351800 1015700 2466300 2347100 2024500 2005400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1237300 2437100 18091 2693700 1202400 1208400 944260 2503200 2379700 2054000 2068900 1152200 2275000 118950 2707700 1147500 1351800 1015700 2466300 2347100 2024500 2005400 1 1 1 1 1 1 1 1 1 1 1 262580000 0 262580000 18371 1896 16870 93181 112756 112756 1 TAPSGSEYRHPGASDRPQPTAMNSIVMETGNTK 2 Oxidation (M) 3518.6154 0.61544362 228 O43660;O43660-2 PLRG1 Pleiotropic regulator 1 yes no 0 0 2 2 By MS/MS 5 0 1 1 32.616 32.556 5 1.2212E-10 7793 20211116_3433_TMUAki_TMT10x_P_F5 88.842 81.467 61433 91511 0 145060 212620 224180 104680 132780 187650 117290 105490 57177 85590 4369.4 145390 200970 221450 114390 139150 184350 115190 104300 1 1 0 1 1 1 1 1 1 1 1 61433 91511 0 145060 212620 224180 104680 132780 187650 117290 105490 57177 85590 4369.4 145390 200970 221450 114390 139150 184350 115190 104300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 54051000 54051000 0 18372 228 16871 93182 112757 112757 181;182 1 TAPVQAPPAPVIVTETPEPAMTSGVYRPPGAR Unmodified 3256.6914 0.69143274 3163 Q9UKY7;Q9UKY7-2;Q9UKY7-3 CDV3 Protein CDV3 homolog yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 62.056 62.152 4 4.3593E-15 18510 20211116_3447_TMUAki_TMT10x_S_F8 106.1 94.788 4461400 7525900 8091.6 6606900 4939200 6177500 4970700 6359900 5325100 6375000 6147400 4153100 7019000 268010 6798700 4729600 6323800 5051400 6457600 5431100 6225500 5904700 3 3 1 3 3 3 3 3 3 3 3 1701400 2375800 0 2219200 1412200 2852000 1588700 1932100 1826900 2056700 1974200 1583700 2216300 83573 2284500 1355000 2845700 1609600 2014600 1853300 2003600 1899900 1 1 0 1 1 1 1 1 1 1 1 2760000 5150000 8091.6 4387700 3527000 3325500 3382100 4427800 3498300 4318300 4173200 2569400 4802700 184430 4514200 3374600 3478100 3441700 4443000 3577800 4222000 4004800 2 2 1 2 2 2 2 2 2 2 2 2751000000 1752400000 998640000 18373 3163 16872 93183;93184 112758;112759;112760 112760 3 TAPVQAPPAPVIVTETPEPAMTSGVYRPPGAR Oxidation (M) 3272.6863 0.68634737 3163 Q9UKY7;Q9UKY7-2;Q9UKY7-3 CDV3 Protein CDV3 homolog yes no 0 0 1 1 By MS/MS By MS/MS 7 0 2 1 1 56.336 56.965 4 0.020568 18672 20211116_3446_TMUAki_TMT10x_S_F7 41.209 35.489 2115000 3622300 42639 3730300 2654800 4003600 2539800 3309200 2964700 2819500 3245500 1969500 3380400 141140 3802000 2544200 4046200 2595400 3384900 3007400 2773900 3122100 3 3 1 3 3 3 3 3 3 3 3 1473900 2445200 42639 2637400 2008900 3315700 1955600 2151300 2025100 1908700 2338700 1372600 2282300 103420 2687100 1927500 3309800 1988600 2238800 2068200 1874100 2246300 2 2 1 2 2 2 2 2 2 2 2 641110 1177100 0 1093000 645850 687930 584200 1157800 939630 910850 906790 596820 1098100 37720 1114900 616720 736360 606810 1146100 939190 899760 875770 1 1 0 1 1 1 1 1 1 1 1 3040100000 1556600000 1483500000 18374 3163 16872 93185;93186 112761 112761 3172 1 TAPYVVTGSVDQTVK Unmodified 1563.8144 0.81443765 1025 P43034 PAFAH1B1 Platelet-activating factor acetylhydrolase IB subunit alpha yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 3 3 3 3 50.958 51.119 2;3 2.523E-43 14284 20211116_3445_TMUAki_TMT10x_S_F6 260.28 215.64 35577000 55264000 338160 64533000 54103000 61410000 39449000 48193000 46666000 41946000 49060000 33128000 51602000 3381700 65133000 51519000 62456000 41004000 49479000 47244000 41224000 47252000 7 7 5 7 7 7 7 7 7 7 7 19165000 28049000 112270 34438000 37798000 46029000 25895000 24364000 24034000 22636000 25178000 17844000 26197000 1811900 34854000 35940000 45690000 26831000 25813000 24572000 22178000 24253000 3 3 1 3 3 3 3 3 3 3 3 16413000 27214000 225900 30096000 16306000 15381000 13554000 23829000 22632000 19311000 23881000 15284000 25405000 1569800 30279000 15579000 16766000 14173000 23666000 22671000 19046000 22999000 4 4 4 4 4 4 4 4 4 4 4 2034900000 1140200000 894700000 18375 1025 16873 93187;93188;93189;93190;93191;93192 112762;112763;112764;112765;112766;112767;112768 112768 7 TAQCFLR Unmodified 894.43817 0.43817159 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 35.403 35.64 2 0.041083 7691 20211116_3447_TMUAki_TMT10x_S_F8 68.081 50.81 1634300 2784500 7910.4 2452600 2499600 3042500 1994500 1390800 1404200 1433200 2044400 1521800 2597000 153410 2534300 2384400 3026000 2031200 1498700 1477100 1398000 1952300 3 3 2 3 3 3 3 3 3 3 3 1634300 2784500 7910.4 2452600 2499600 3042500 1994500 1390800 1404200 1433200 2044400 1521800 2597000 153410 2534300 2384400 3026000 2031200 1498700 1477100 1398000 1952300 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28990000 28990000 0 18376 1997 16874 93193;93194;93195;93196 112769;112770 112770 2 TAQEHDKRDPVVAYYCR Unmodified 2106.9905 0.99052131 2882 Q9NP79 VTA1 Vacuolar protein sorting-associated protein VTA1 homolog yes yes 0 0 0 2 By MS/MS 5 0 2 2 32.609 32.549 4;5 4.0435E-29 7730 20211116_3433_TMUAki_TMT10x_P_F5 187.39 170.25 1002400 1603000 0 2286900 4466500 3401900 1727500 1817800 1799100 1366400 1892900 933290 1498300 127810 2301300 4213600 3361300 1897800 1914600 1830500 1353100 1823100 2 2 0 2 2 2 2 2 2 2 2 1002400 1603000 0 2286900 4466500 3401900 1727500 1817800 1799100 1366400 1892900 933290 1498300 127810 2301300 4213600 3361300 1897800 1914600 1830500 1353100 1823100 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 234530000 234530000 0 18377 2882 16875 93197;93198 112771;112772 112772 2 TAQEVETYRR Unmodified 1251.6208 0.62076364 710 P17844;P17844-2 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 1 By MS/MS 4 0 1 1 28.344 28.388 3 0.00055586 5731 20211116_3431_TMUAki_TMT10x_P_F4 96.64 74.442 318360 505390 0 464250 393810 522050 325830 238240 279210 295330 373640 296360 471430 19674 477380 375390 521880 332610 258260 289440 286080 357520 1 1 0 1 1 1 1 1 1 1 1 318360 505390 0 464250 393810 522050 325830 238240 279210 295330 373640 296360 471430 19674 477380 375390 521880 332610 258260 289440 286080 357520 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18386000 18386000 0 18378 710 16876 93199 112773 112773 1 TAQGSLSLK Unmodified 903.50255 0.50254598 186 O15372 EIF3H Eukaryotic translation initiation factor 3 subunit H yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.816 1 1 1 1 2 38.422 38.737 2 0.00014073 10915 20211116_3435_TMUAki_TMT10x_P_F7 137.98 85.26 980050 1535400 1761.8 1585200 1283000 1252000 992790 806650 828550 767760 1164800 912450 1432900 75910 1608600 1222300 1286000 1017100 841460 862020 751440 1113300 3 3 1 3 3 3 3 3 3 3 3 506360 770920 0 768260 757830 882270 569380 430640 450170 409200 591090 471430 719340 40697 785650 721600 881620 583710 460000 468190 400530 565840 1 1 0 1 1 1 1 1 1 1 1 473690 764480 1761.8 816920 525180 369700 423420 376010 378370 358560 573750 441020 713540 35213 823000 500690 404350 433420 381460 393830 350910 547430 2 2 1 2 2 2 2 2 2 2 2 59726000 46767000 12959000 18379 186 16877 93200;93201;93202 112774;112775;112776 112774 3 TAQNHPMLVELK Oxidation (M) 1395.718 0.71803484 3308 Q9Y4Z0 LSM4 U6 snRNA-associated Sm-like protein LSm4 yes yes 0 0 1 0 By MS/MS By MS/MS 6 0.632 1 3 1 2 3 37.598 37.805 3 9.1869E-05 11019 20211116_3446_TMUAki_TMT10x_S_F7 94.023 73.07 1264100 1925000 19897 2482900 2834100 2151200 1520700 1255600 1301100 1166900 1761300 1177200 1798300 143260 2488600 2685500 2191800 1604400 1319100 1349600 1143400 1684800 6 6 5 6 6 6 6 6 6 6 6 905620 1322400 9257.8 1684000 2516900 1941800 1241900 983640 1009000 901280 1240400 843280 1235300 104200 1696300 2381700 1940800 1319200 1046000 1044900 883630 1189400 4 4 3 4 4 4 4 4 4 4 4 358520 602530 10639 798920 317160 209350 278800 271930 292080 265670 520860 333900 562960 39060 792340 303790 251050 285220 273130 304680 259730 495370 2 2 2 2 2 2 2 2 2 2 2 84242000 61636000 22606000 18380 3308 16878 93203;93204;93205;93206;93207 112777;112778;112779;112780;112781;112782;112783 112783 3271 7 TAQNHPMLVELK Unmodified 1379.7231 0.72312022 3308 Q9Y4Z0 LSM4 U6 snRNA-associated Sm-like protein LSm4 yes yes 0 0 0 0 By MS/MS 7 0 1 1 42.436 43.011 3 0.00017984 12951 20211116_3446_TMUAki_TMT10x_S_F7 85.837 61.851 609030 985530 6559.4 1301200 511780 394950 504530 599390 597590 584490 943630 567110 920790 55244 1291600 490930 462840 515020 598650 616150 571460 899570 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 609030 985530 6559.4 1301200 511780 394950 504530 599390 597590 584490 943630 567110 920790 55244 1291600 490930 462840 515020 598650 616150 571460 899570 1 1 1 1 1 1 1 1 1 1 1 49172000 0 49172000 18381 3308 16878 93208 112784 112784 1 TAQNLSIFLGSFR Unmodified 1452.7725 0.77251325 279 O60610;O60610-2;O60610-3 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 By MS/MS 5 0 1 1 77.671 77.682 2 6.2952E-08 24865 20211116_3444_TMUAki_TMT10x_S_F5 108.72 81.93 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18382 279 16879 93209 112785 112785 1 TAQSGALRDVSEELSR Unmodified 1717.8595 0.85949036 981 P40222 TXLNA Alpha-taxilin yes yes 0 0 0 1 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 44.144 44.175 3 2.8351E-47 12392 20211116_3442_TMUAki_TMT10x_S_F4 252.76 174.98 15762000 27705000 169800 30255000 21164000 22174000 15035000 23627000 23711000 19150000 21693000 14677000 25861000 1249300 30564000 20149000 23120000 15839000 23815000 23671000 18887000 20989000 7 7 5 7 7 7 7 7 7 7 7 5761500 9921800 135420 11603000 12011000 14401000 8753400 9210300 9679200 7254100 7710100 5365500 9264400 691410 11760000 11443000 14381000 9077900 9567800 9736600 7165400 7498700 2 2 2 2 2 2 2 2 2 2 2 10001000 17783000 34375 18651000 9153100 7773400 6281200 14417000 14032000 11896000 13982000 9311600 16597000 557850 18803000 8705600 8739300 6761400 14247000 13934000 11722000 13490000 5 5 3 5 5 5 5 5 5 5 5 3131100000 1559000000 1572100000 18383 981 16880 93210;93211;93212;93213;93214 112786;112787;112788;112789;112790;112791;112792 112790 7 TASDVVQPAAVQAQGQVNDENRRPQR Unmodified 2833.4179 0.41792851 2712 Q9BX40;Q9BX40-3 LSM14B Protein LSM14 homolog B yes no 0 0 0 2 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 30.21 30.228 4 1.5685E-38 7983 20211116_3433_TMUAki_TMT10x_P_F5 180.68 168.56 342970 445940 0 532230 920240 787350 473230 415950 603020 405560 460680 319270 416430 27507 540690 870580 778010 507410 441340 602740 396520 448810 3 3 0 3 3 3 3 3 3 3 3 336100 430890 0 509620 910560 776250 464300 400630 589070 387890 441310 312870 402360 27507 518320 861320 765900 498160 425910 588570 379360 430290 2 2 0 2 2 2 2 2 2 2 2 6873 15045 0 22614 9681.1 11100 8928.2 15318 13953 17674 19369 6399.4 14067 0 22363 9263.7 12113 9251.2 15432 14167 17164 18516 1 1 0 1 1 1 1 1 1 1 1 624880000 587280000 37597000 18384 2712 16881 93215;93216;93217 112793;112794;112795 112794 3 TASEMVLADDNFSTIVAAVEEGR Unmodified 2424.1479 0.14786939 697 P16615;P16615-5;P16615-2;P16615-3;P16615-4;O14983;O14983-3;O14983-2 ATP2A2;ATP2A1 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 yes no 0 0 0 0 By MS/MS 1.5 0.5 1 1 2 80.832 80.832 3 3.5963E-37 26623 20211116_3428_TMUAki_TMT10x_P_F1 196.61 171.71 2184600 3241200 19107 3754700 2250800 3599500 2297000 1561200 1761200 1783200 2342000 2034200 3026300 199850 3791800 2160500 3630700 2310900 1696900 1835800 1732400 2241300 2 2 2 2 2 2 2 2 2 2 2 2184600 3241200 19107 3754700 2250800 3599500 2297000 1561200 1761200 1783200 2342000 2034200 3026300 199850 3791800 2160500 3630700 2310900 1696900 1835800 1732400 2241300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1006400000 1006400000 0 18385 697 16882 93218;93219 112796;112797;112798 112796 3 TASEMVLADDNFSTIVAAVEEGR Oxidation (M) 2440.1428 0.14278401 697 P16615;P16615-5;P16615-2;P16615-3;P16615-4;O14983;O14983-3;O14983-2 ATP2A2;ATP2A1 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 yes no 0 0 1 0 By MS/MS 1 0 1 1 79.784 79.784 2 7.444E-08 26180 20211116_3428_TMUAki_TMT10x_P_F1 96.096 77.993 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18386 697 16882 93220 112799 112799 784 1 TASFSESRADEVAPAK Unmodified 1664.8006 0.8005785 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 1 By MS/MS 4 0 1 1 36.609 36.637 3 1.8598E-10 9038 20211116_3431_TMUAki_TMT10x_P_F4 125.41 103.21 793930 1212500 13313 1683100 3279200 1826500 1127600 949820 1273800 760260 1254000 739320 1133100 113040 1686000 3090900 1832200 1260800 1004300 1288800 750320 1210300 1 1 1 1 1 1 1 1 1 1 1 793930 1212500 13313 1683100 3279200 1826500 1127600 949820 1273800 760260 1254000 739320 1133100 113040 1686000 3090900 1832200 1260800 1004300 1288800 750320 1210300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 88215000 88215000 0 18387 1200 16883 93221 112800 112800 1 TASFSESRADEVAPAKK Unmodified 1792.8955 0.89554151 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 2 By MS/MS By matching 5 0 2 1 1 34.592 34.656 4 0.00050226 8723 20211116_3433_TMUAki_TMT10x_P_F5 73.057 57.803 493030 745530 0 893810 1523200 1096500 670900 710830 728980 508430 710160 459050 696220 54172 904390 1439000 1095900 726890 736120 738400 504890 685640 1 1 0 1 1 1 1 1 1 1 1 493030 745530 0 893810 1523200 1096500 670900 710830 728980 508430 710160 459050 696220 54172 904390 1439000 1095900 726890 736120 738400 504890 685640 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 53116000 39695000 13421000 18388 1200 16884 93222;93223 112801 112801 1 TASGAVDEDALTLEELEEQQR Unmodified 2303.0765 0.076478585 1988 Q6NZY4;Q6NZY4-2 ZCCHC8 Zinc finger CCHC domain-containing protein 8 yes no 0 0 0 0 By MS/MS 1 0 1 1 66.916 66.693 3 1.0938E-26 22860 20211116_3439_TMUAki_TMT10x_S_F1 172.84 133.16 2506300 5047400 36812 4232400 3409200 2992200 2868700 3418600 3701000 3715100 3722200 2333900 4706700 254740 4356800 3257600 3134400 2963900 3463100 3729500 3616100 3590000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2506300 5047400 36812 4232400 3409200 2992200 2868700 3418600 3701000 3715100 3722200 2333900 4706700 254740 4356800 3257600 3134400 2963900 3463100 3729500 3616100 3590000 2 2 2 2 2 2 2 2 2 2 2 345360000 0 345360000 18389 1988 16885 93224 112802;112803 112802 2 TASGAVDEDALTLEELEEQQRR Unmodified 2459.1776 0.17758961 1988 Q6NZY4;Q6NZY4-2 ZCCHC8 Zinc finger CCHC domain-containing protein 8 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 58.419 58.269 3 9.92E-06 17362 20211116_3428_TMUAki_TMT10x_P_F1 80.972 72.684 25084000 43755000 40612 42240000 30755000 37010000 24170000 49122000 54326000 41818000 40914000 23353000 40822000 1921600 43121000 29308000 38298000 25794000 49114000 53472000 41142000 39884000 3 3 1 3 3 3 3 3 3 3 3 6694000 11109000 40612 10766000 12812000 19209000 8744600 11999000 13745000 10235000 9787100 6233000 10365000 678510 11134000 12185000 18886000 9237500 12511000 13624000 10069000 9563800 1 1 1 1 1 1 1 1 1 1 1 18390000 32646000 0 31474000 17943000 17801000 15425000 37123000 40581000 31582000 31127000 17120000 30458000 1243100 31987000 17124000 19412000 16557000 36603000 39847000 31073000 30320000 2 2 0 2 2 2 2 2 2 2 2 3053300000 1910800000 1142600000 18390 1988 16886 93225;93226 112804;112805;112806 112804 3 TASISSSPSEGTPTVGSYGCTPQSLPK Unmodified 2695.2647 0.26469006 2013 Q6PKG0;Q6PKG0-3 LARP1 La-related protein 1 yes no 0 0 0 0 By MS/MS 7 0 1 1 53.489 54.198 4 0.0046069 17001 20211116_3435_TMUAki_TMT10x_P_F7 45.972 35.914 1529800 2746100 3304.9 2842700 2529600 4299000 2332700 2940400 2874100 2460300 2838500 1424400 2562700 143920 2915000 2420800 4259200 2393200 3043800 2898900 2422600 2739300 1 1 1 1 1 1 1 1 1 1 1 1529800 2746100 3304.9 2842700 2529600 4299000 2332700 2940400 2874100 2460300 2838500 1424400 2562700 143920 2915000 2420800 4259200 2393200 3043800 2898900 2422600 2739300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 504580000 504580000 0 18391 2013 16887 93227 112807 112807 1 TASNIIDVSAADSQGMEQHEYMDR 2 Oxidation (M) 2699.1439 0.143923 1978 Q6IAA8 LAMTOR1 Ragulator complex protein LAMTOR1 yes yes 0 0 2 0 By MS/MS 2.5 0.5 1 1 2 43.31 43.156 3 2.5579E-09 14304 20211116_3441_TMUAki_TMT10x_S_F3 101.92 94.471 476600 856670 1553.8 968710 373880 474210 317620 1176000 1401500 964820 919520 443720 799780 32490 972940 356720 529370 358670 1154000 1361200 951000 901950 5 5 1 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 476600 856670 1553.8 968710 373880 474210 317620 1176000 1401500 964820 919520 443720 799780 32490 972940 356720 529370 358670 1154000 1361200 951000 901950 5 5 1 5 5 5 5 5 5 5 5 168280000 0 168280000 18392 1978 16888 93228;93229 112808;112809;112810;112811;112812 112811 2534;2535 5 TASNVEEAFINTAK Unmodified 1493.7362 0.73618733 1287 P61019;P61019-2 RAB2A Ras-related protein Rab-2A yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.667 1 4 4 4 5 59.721 59.782 2;3 2.6785E-37 18385 20211116_3431_TMUAki_TMT10x_P_F4 249.45 209.44 33833000 58423000 289960 60511000 46191000 57409000 39416000 45092000 44892000 43309000 46236000 31502000 54523000 2982100 61538000 44120000 58399000 40505000 46414000 45478000 42371000 44561000 8 8 4 8 8 8 8 8 8 8 8 17754000 29865000 80149 31664000 29605000 42581000 24848000 23673000 23673000 22683000 24103000 16530000 27874000 1547700 32339000 28261000 42280000 25416000 24994000 24150000 22194000 23238000 4 4 2 4 4 4 4 4 4 4 4 16079000 28558000 209810 28847000 16586000 14828000 14569000 21418000 21219000 20626000 22133000 14972000 26648000 1434400 29199000 15859000 16118000 15089000 21420000 21328000 20177000 21322000 4 4 2 4 4 4 4 4 4 4 4 4562600000 2425600000 2137000000 18393 1287 16889 93230;93231;93232;93233;93234;93235;93236;93237;93238 112813;112814;112815;112816;112817;112818;112819;112820;112821;112822 112813 10 TASRPAPLVQQLSPSLLPNSK Unmodified 2203.2325 0.23246614 3358 Q9Y6X9;Q9Y6X9-2 MORC2 MORC family CW-type zinc finger protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 4 0 4 2 2 57.923 57.956 3;4 6.8055E-20 17617 20211116_3431_TMUAki_TMT10x_P_F4 157.88 140.28 9704800 16441000 60838 16434000 13050000 15431000 11081000 12370000 12257000 11883000 13608000 9036300 15341000 877570 16751000 12465000 15714000 11380000 12717000 12466000 11626000 13086000 4 4 1 4 4 4 4 4 4 4 4 4310000 6941500 60838 7173400 6386000 9945800 5782900 6028500 5932500 5523500 6220000 4013400 6478000 427890 7343100 6110700 9873100 5902000 6312000 6038900 5415300 5991300 2 2 1 2 2 2 2 2 2 2 2 5394800 9499300 0 9260400 6664200 5485600 5298300 6341200 6324900 6359800 7388300 5023000 8863000 449680 9407600 6354600 5840500 5477500 6404700 6427300 6210600 7094300 2 2 0 2 2 2 2 2 2 2 2 1767800000 1239400000 528430000 18394 3358 16890 93239;93240;93241;93242 112823;112824;112825;112826 112823 4 TASTSFTNIAYDLCAK Unmodified 1761.8244 0.82435041 2068 Q7LGA3;Q7LGA3-3;Q7LGA3-2 HS2ST1 Heparan sulfate 2-O-sulfotransferase 1 yes no 0 0 0 0 By MS/MS 7.67 0.471 1 2 3 69.487 69.764 3 1.5377E-10 23990 20211116_3446_TMUAki_TMT10x_S_F7 122.63 94.986 9467400 17401000 213540 16186000 13081000 11355000 12222000 8743500 7862100 8745100 13162000 8816700 16232000 1034500 16526000 12534000 11807000 12307000 9021600 8377100 8540800 12532000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9467400 17401000 213540 16186000 13081000 11355000 12222000 8743500 7862100 8745100 13162000 8816700 16232000 1034500 16526000 12534000 11807000 12307000 9021600 8377100 8540800 12532000 2 2 2 2 2 2 2 2 2 2 2 763220000 0 763220000 18395 2068 16891 93243;93244;93245 112827;112828;112829;112830 112827 4 TATANGFQMVTSGVQSK Oxidation (M) 1741.8305 0.83049842 2399 Q969V3;Q969V3-2 NCLN Nicalin yes no 0 0 1 0 By MS/MS 8 0 1 1 45.902 46.039 3 0.019843 12511 20211116_3436_TMUAki_TMT10x_P_F8 46.494 34.328 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18396 2399 16892 93246 112831 112831 2726 1 TATAVAHCK Unmodified 957.4702 0.4702 1340 P62249 RPS16 40S ribosomal protein S16 yes yes 0 0 0 0 By MS/MS 5 0 1 1 26.985 26.911 3 0.0002069 5468 20211116_3433_TMUAki_TMT10x_P_F5 118.71 99.441 342740 549810 4167.2 428860 362040 497200 282810 197430 218580 227080 387980 319150 512580 32569 447070 345400 495570 289020 216750 231190 220560 369030 1 1 1 1 1 1 1 1 1 1 1 342740 549810 4167.2 428860 362040 497200 282810 197430 218580 227080 387980 319150 512580 32569 447070 345400 495570 289020 216750 231190 220560 369030 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15820000 15820000 0 18397 1340 16893 93247 112832 112832 1 TATCHSSSSPPIDAASAEPYGFR Unmodified 2408.0703 0.07028777 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS 7 0 1 1 42.372 42.833 3 2.6517E-28 12504 20211116_3435_TMUAki_TMT10x_P_F7 174.63 167.4 164040 294680 0 380660 444670 554270 258420 269620 301030 233720 272710 152700 275290 12610 384860 421370 547550 273190 287430 303380 229740 263950 1 1 0 1 1 1 1 1 1 1 1 164040 294680 0 380660 444670 554270 258420 269620 301030 233720 272710 152700 275290 12610 384860 421370 547550 273190 287430 303380 229740 263950 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 105570000 105570000 0 18398 1057 16894 93248 112833 112833 1 TATESFASDPILYRPVAVALDTK Unmodified 2464.285 0.28495522 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 1 By MS/MS By MS/MS 6.14 1.88 1 1 3 2 4 5 11 10 25 12 68.34 68.36 2;3;4 1.6026E-82 25980 20211116_3446_TMUAki_TMT10x_S_F7 288.72 278.92 503370000 834220000 3796600 822050000 498750000 670700000 619990000 425350000 416040000 464680000 591810000 468670000 778370000 39287000 837220000 481160000 687080000 616230000 446030000 438410000 452210000 565450000 63 63 39 63 63 63 63 63 63 63 63 220930000 355600000 1427500 341160000 207230000 366500000 252490000 181130000 178920000 205460000 250280000 205710000 331760000 17853000 349440000 199820000 367640000 251470000 194250000 187770000 199660000 239220000 39 39 26 39 39 39 39 39 39 39 39 282440000 478620000 2369100 480890000 291520000 304200000 367500000 244220000 237110000 259220000 341530000 262970000 446610000 21433000 487780000 281340000 319450000 364760000 251780000 250630000 252550000 326230000 24 24 13 24 24 24 24 24 24 24 24 144750000000 72223000000 72522000000 18399 670;671 16895 93249;93250;93251;93252;93253;93254;93255;93256;93257;93258;93259;93260;93261;93262;93263;93264;93265;93266;93267;93268;93269;93270;93271;93272;93273;93274;93275;93276;93277;93278;93279;93280;93281;93282;93283;93284;93285 112834;112835;112836;112837;112838;112839;112840;112841;112842;112843;112844;112845;112846;112847;112848;112849;112850;112851;112852;112853;112854;112855;112856;112857;112858;112859;112860;112861;112862;112863;112864;112865;112866;112867;112868;112869;112870;112871;112872;112873;112874;112875;112876;112877;112878;112879;112880;112881;112882;112883;112884;112885;112886;112887;112888;112889;112890;112891;112892;112893;112894;112895;112896;112897;112898;112899;112900;112901 112896 68 TATESFASDPILYRPVAVALDTKGPEIR Unmodified 3016.587 0.5869509 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 2 By MS/MS By MS/MS 6.32 2.05 2 2 3 6 6 8 11 72.257 72.322 3;4;5 1.8885E-78 22933 20211116_3436_TMUAki_TMT10x_P_F8 256.75 242.88 409750000 656960000 3202300 582930000 530860000 551330000 455280000 409960000 392190000 417420000 486380000 381500000 612740000 28275000 599440000 507000000 560430000 463810000 424180000 405090000 407370000 466280000 41 41 26 41 41 41 41 41 41 41 41 171080000 267910000 2056500 240630000 157660000 305290000 189090000 175350000 171200000 178950000 200310000 159300000 249890000 11351000 248380000 152010000 304100000 189610000 184950000 175980000 174620000 192330000 16 16 12 16 16 16 16 16 16 16 16 238670000 389050000 1145800 342300000 373190000 246040000 266190000 234610000 220990000 238480000 286080000 222210000 362850000 16924000 351060000 354990000 256330000 274200000 239230000 229110000 232750000 273950000 25 25 14 25 25 25 25 25 25 25 25 174500000000 87013000000 87488000000 18400 670;671 16896 93286;93287;93288;93289;93290;93291;93292;93293;93294;93295;93296;93297;93298;93299;93300;93301;93302;93303;93304 112902;112903;112904;112905;112906;112907;112908;112909;112910;112911;112912;112913;112914;112915;112916;112917;112918;112919;112920;112921;112922;112923;112924;112925;112926;112927;112928;112929;112930;112931;112932;112933;112934;112935;112936;112937;112938;112939;112940;112941 112913 40 TATITEPR Unmodified 887.47125 0.47124585 1757 Q15029;Q15029-2;Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 By MS/MS 3 0 1 1 30.568 30.315 2 0.016508 9189 20211116_3441_TMUAki_TMT10x_S_F3 75.854 43.741 177360 339150 0 268160 212010 165370 232610 169570 198190 182000 257740 165130 316190 12903 277040 203650 174900 233800 172570 205240 177240 246790 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 177360 339150 0 268160 212010 165370 232610 169570 198190 182000 257740 165130 316190 12903 277040 203650 174900 233800 172570 205240 177240 246790 1 1 0 1 1 1 1 1 1 1 1 10809000 0 10809000 18401 1757 16897 93305 112942 112942 1 TATPQQAQEVHEK Unmodified 1465.7161 0.71612058 1271 P60174;P60174-1;P60174-4 TPI1 Triosephosphate isomerase yes no 0 0 0 0 By MS/MS By MS/MS 3 1.41 1 1 1 1 1 4 1 29.011 28.905 3 7.1243E-30 7090 20211116_3429_TMUAki_TMT10x_P_F2 239.61 218.31 1372700 2615600 41141 2174700 1814400 2612800 1746400 1463200 1107000 1127600 1731400 1278300 2439000 151500 2256300 1740100 2608800 1755300 1535700 1176300 1115100 1650900 7 7 5 7 7 7 7 7 7 7 7 651520 1131000 28376 1013100 937610 1952600 709790 963360 496230 546940 824690 606820 1054900 81936 1055900 894850 1909000 725270 1016900 525830 551330 785380 5 5 4 5 5 5 5 5 5 5 5 721150 1484600 12765 1161600 876770 660120 1036700 499870 610790 580650 906710 671520 1384100 69569 1200300 845200 699810 1030000 518740 650510 563760 865510 2 2 1 2 2 2 2 2 2 2 2 346690000 238660000 108030000 18402 1271 16899 93306;93307;93308;93309;93310 112943;112944;112945;112946;112947;112948;112949 112945 7 TATQLAVNK Unmodified 944.5291 0.52909508 2609 Q99832;Q99832-3;Q99832-4 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 34.514 34.491 2 0.0013054 7361 20211116_3434_TMUAki_TMT10x_P_F6 99.815 52.748 130770 203390 0 218550 216120 219040 145210 82395 87553 91904 131090 121720 189840 7328.7 221890 205140 220040 149220 90954 93139 89367 125110 1 1 0 1 1 1 1 1 1 1 1 130770 203390 0 218550 216120 219040 145210 82395 87553 91904 131090 121720 189840 7328.7 221890 205140 220040 149220 90954 93139 89367 125110 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3838400 3838400 0 18403 2609 16900 93311;93312 112950;112951 112950 2 TAVAHRPGAFK Unmodified 1153.6356 0.63562584 2394 Q969H8 MYDGF Myeloid-derived growth factor yes yes 0 0 0 1 By MS/MS By MS/MS 1.8 0.748 2 2 1 3 2 28.968 28.836 3;4 3.0913E-07 7088 20211116_3429_TMUAki_TMT10x_P_F2 138.63 107.4 2034800 3273600 27026 3143600 2629700 3094600 2274400 1417900 1628900 1569500 2305000 1894800 3054100 201390 3215400 2514100 3117900 2305600 1530800 1709400 1526600 2202600 6 6 5 6 6 6 6 6 6 6 6 1636200 2638200 12953 2514800 2243800 2751000 1790300 1169400 1369600 1298300 1846400 1523600 2461300 155410 2577800 2140800 2752400 1826700 1272700 1428700 1262600 1766400 4 4 3 4 4 4 4 4 4 4 4 398560 635390 14072 628760 385900 343620 484040 248470 259290 271250 458600 371210 592860 45981 637640 373330 365500 478890 258110 280690 263980 436230 2 2 2 2 2 2 2 2 2 2 2 192180000 160650000 31536000 18404 2394 16901 93313;93314;93315;93316;93317 112952;112953;112954;112955;112956;112957 112954 6 TAVAPIER Unmodified 855.48142 0.48141661 639;502;638 P05141;Q9H0C2;P12235;P12236 SLC25A5;SLC25A31;SLC25A4;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS 2.67 1.49 2 1 1 1 1 4 2 32.046 31.968 2 0.00047979 9780 20211116_3441_TMUAki_TMT10x_S_F3 162.25 114.34 6140900 10510000 9591.3 9185500 9118800 9059100 7176400 4925300 5897900 5151800 7771000 5717400 9801900 503710 9462400 8691700 9143700 7341300 5223100 6122500 5022200 7438400 6 6 2 6 6 6 6 6 6 6 6 4401300 7362300 3685.7 6507900 7013800 7456200 4910600 3498700 4223200 3673500 5555400 4097600 6866600 355160 6713700 6669300 7448400 5069700 3762200 4373700 3580500 5317800 4 4 1 4 4 4 4 4 4 4 4 1739600 3147600 5905.6 2677600 2105000 1602900 2265800 1426600 1674700 1478400 2215700 1619800 2935300 148550 2748700 2022300 1695300 2271600 1460900 1748800 1441700 2120600 2 2 1 2 2 2 2 2 2 2 2 743360000 476440000 266920000 18405 502;638;639 16902 93318;93319;93320;93321;93322;93323 112958;112959;112960;112961;112962;112963 112963 6 TAVAPSAVNLADPR Unmodified 1380.7361 0.73612775 3216 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 3 1 2 44.904 45.047 2;3 1.1991E-18 11518 20211116_3444_TMUAki_TMT10x_S_F5 165.66 126.12 2178400 3714200 9910.9 4483200 1774500 1711400 1715600 3220300 3580500 2659600 3365500 2028400 3468600 184180 4477800 1700600 1948400 1801000 3181200 3553300 2620600 3253200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2178400 3714200 9910.9 4483200 1774500 1711400 1715600 3220300 3580500 2659600 3365500 2028400 3468600 184180 4477800 1700600 1948400 1801000 3181200 3553300 2620600 3253200 2 2 2 2 2 2 2 2 2 2 2 148080000 0 148080000 18406 3216 16903 93324;93325;93326 112964;112965;112966 112966 3 TAVCDIPPR Unmodified 1027.5121 0.51206481 1418;1668;2689;539;488;1889 P07437;A6NNZ2;P68371;Q13885;Q3ZCM7;Q9BVA1;P04350 TUBB;TUBB4B;TUBB2A;TUBB8;TUBB2B;TUBB4A Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-4A chain no no 0 0 0 0 By MS/MS By MS/MS 4.29 1.83 2 14 19 17 14 10 7 6 36 53 31.424 31.481 2;3 6.0761E-06 8712 20211116_3430_TMUAki_TMT10x_P_F3 160.88 114.45 82233000 136540000 587030 143110000 157460000 123170000 99412000 88187000 96555000 77018000 119420000 76564000 127430000 7490200 145230000 149500000 125920000 103780000 91093000 99165000 75680000 114490000 112 112 53 112 112 112 112 112 112 112 112 43235000 69381000 406180 73850000 115210000 90801000 54309000 48043000 50841000 41112000 63656000 40255000 64757000 4489500 75277000 108930000 90495000 58165000 50797000 52328000 40437000 61010000 48 48 24 48 48 48 48 48 48 48 48 38998000 67161000 180850 69260000 42253000 32371000 45103000 40144000 45715000 35906000 55765000 36309000 62676000 3000700 69956000 40569000 35427000 45620000 40297000 46837000 35242000 53483000 64 64 29 64 64 64 64 64 64 64 64 5911100000 3162600000 2748500000 18407 539;1418;1668;1889;2689;488 16904 93327;93328;93329;93330;93331;93332;93333;93334;93335;93336;93337;93338;93339;93340;93341;93342;93343;93344;93345;93346;93347;93348;93349;93350;93351;93352;93353;93354;93355;93356;93357;93358;93359;93360;93361;93362;93363;93364;93365;93366;93367;93368;93369;93370;93371;93372;93373;93374;93375;93376;93377;93378;93379;93380;93381;93382;93383;93384;93385;93386;93387;93388;93389;93390;93391;93392;93393;93394;93395;93396;93397;93398;93399;93400;93401;93402;93403;93404;93405;93406;93407;93408;93409;93410;93411;93412;93413;93414;93415 112967;112968;112969;112970;112971;112972;112973;112974;112975;112976;112977;112978;112979;112980;112981;112982;112983;112984;112985;112986;112987;112988;112989;112990;112991;112992;112993;112994;112995;112996;112997;112998;112999;113000;113001;113002;113003;113004;113005;113006;113007;113008;113009;113010;113011;113012;113013;113014;113015;113016;113017;113018;113019;113020;113021;113022;113023;113024;113025;113026;113027;113028;113029;113030;113031;113032;113033;113034;113035;113036;113037;113038;113039;113040;113041;113042;113043;113044;113045;113046;113047;113048;113049;113050;113051;113052;113053;113054;113055;113056;113057;113058;113059;113060;113061;113062;113063;113064;113065;113066;113067;113068;113069;113070;113071;113072;113073;113074;113075;113076;113077;113078;113079;113080;113081;113082;113083;113084;113085;113086;113087;113088;113089;113090;113091;113092;113093;113094;113095;113096;113097;113098;113099;113100;113101;113102;113103 112979 137 TAVCDIPPRGLK Unmodified 1325.7126 0.71255553 1418;1668;2689;539;488;1889 P07437;A6NNZ2;P68371;Q13885;Q3ZCM7;Q9BVA1;P04350 TUBB;TUBB4B;TUBB2A;TUBB8;TUBB2B;TUBB4A Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-4A chain no no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 38.912 39.331 3 0.027076 9279 20211116_3447_TMUAki_TMT10x_S_F8 56.956 38.644 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18408 539;1418;1668;1889;2689;488 16905 93416;93417;93418 113104;113105;113106 113106 3 TAVDGPDLEMLTGQER Oxidation (M) 1746.8094 0.80942862 1704 Q14318;Q14318-2 FKBP8 Peptidyl-prolyl cis-trans isomerase FKBP8 yes no 0 0 1 0 By MS/MS 3 0 1 1 56.03 55.635 3 0.044508 19431 20211116_3441_TMUAki_TMT10x_S_F3 41.86 29.093 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18409 1704 16906 93419 113107 113107 2293 1 TAVDSLVAYSVK Unmodified 1251.6711 0.67106787 1536 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 0 By MS/MS By MS/MS 6.75 0.433 1 3 3 1 63.675 64.267 2;3 4.7515E-15 21124 20211116_3435_TMUAki_TMT10x_P_F7 187.42 157.61 26109000 44050000 128980 43199000 42677000 62578000 35925000 41398000 41834000 37387000 37611000 24311000 41100000 2454700 44420000 40754000 62079000 36976000 43040000 42151000 36679000 36413000 5 5 4 5 5 5 5 5 5 5 5 22831000 38029000 97171 37041000 39037000 58326000 32767000 35980000 36081000 32155000 32088000 21259000 35482000 2148200 38176000 37275000 57603000 33668000 37595000 36419000 31562000 31078000 4 4 3 4 4 4 4 4 4 4 4 3277800 6021000 31811 6157400 3639400 4252400 3157400 5418100 5753200 5231700 5522900 3052200 5618800 306460 6243400 3479400 4475800 3308200 5444400 5731100 5117200 5334900 1 1 1 1 1 1 1 1 1 1 1 1922600000 1403200000 519350000 18410 1536 16907 93420;93421;93422;93423 113108;113109;113110;113111;113112;113113 113111 6 TAVETAVLLLR Unmodified 1184.7129 0.71287311 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 By MS/MS By MS/MS 5.83 2.41 2 2 2 2 4 5 7 71.748 71.778 2;3 6.5661E-16 24215 20211116_3435_TMUAki_TMT10x_P_F7 209.6 144.56 85819000 140980000 881430 128490000 83154000 131080000 96588000 78902000 79530000 84044000 110240000 79911000 131500000 7345500 131290000 80107000 132200000 96743000 82323000 82397000 81870000 105400000 10 10 6 9 9 10 9 9 9 9 10 39532000 61203000 86169 53139000 35362000 76873000 39560000 34108000 33746000 36775000 51304000 36808000 57079000 2889800 54430000 34011000 75888000 39728000 36231000 34861000 35806000 48948000 6 6 3 5 5 6 5 5 5 5 6 46287000 79772000 795260 75346000 47792000 54203000 57028000 44794000 45784000 47269000 58941000 43102000 74419000 4455700 76862000 46096000 56311000 57015000 46092000 47536000 46063000 56451000 4 4 3 4 4 4 4 4 4 4 4 29777000000 17757000000 12020000000 18411 1094 16908 93424;93425;93426;93427;93428;93429;93430;93431;93432;93433;93434;93435 113114;113115;113116;113117;113118;113119;113120;113121;113122;113123;113124;113125;113126;113127 113118 14 TAVIDHHNYDISDLGQHTLIVADTENLLK Unmodified 3244.6364 0.63642029 976 P39656;P39656-3;P39656-2 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 0 0 0 0 By MS/MS By MS/MS 5.8 1.47 1 2 1 1 4 1 69.896 70.034 5 2.2381E-64 22859 20211116_3433_TMUAki_TMT10x_P_F5 225.39 212.71 9705100 16518000 19140 15093000 9458600 14193000 10960000 7404000 7694800 9455100 10514000 9036300 15408000 790670 15484000 9106400 14362000 10938000 7931900 8071000 9149800 10055000 3 3 1 3 3 3 3 3 3 3 3 7305200 11558000 0 10411000 6179600 11288000 7227900 5398600 5363500 6764400 7372700 6801700 10781000 561550 10715000 5949800 11313000 7219000 5827000 5609300 6550200 7050000 2 2 0 2 2 2 2 2 2 2 2 2399800 4959400 19140 4681300 3279000 2905100 3732600 2005500 2331300 2690700 3141200 2234600 4626600 229110 4768800 3156600 3048900 3719000 2104900 2461700 2599600 3005100 1 1 1 1 1 1 1 1 1 1 1 6780300000 5256000000 1524300000 18412 976 16909 93436;93437;93438;93439;93440 113128;113129;113130 113128 3 TAVLTAFANGR Unmodified 1119.6037 0.60365701 459 O96019;O96019-2;O94805 ACTL6A;ACTL6B Actin-like protein 6A;Actin-like protein 6B yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 52.927 52.776 2 4.4403E-11 18284 20211116_3441_TMUAki_TMT10x_S_F3 126.31 101.79 6393600 10284000 0 11020000 12200000 14464000 9110000 9989500 8786700 8168000 9085000 5953100 9599200 607170 11241000 11620000 14422000 9392200 10328000 8963700 8052400 8754700 1 1 0 1 1 1 1 1 1 1 1 6393600 10284000 0 11020000 12200000 14464000 9110000 9989500 8786700 8168000 9085000 5953100 9599200 607170 11241000 11620000 14422000 9392200 10328000 8963700 8052400 8754700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 438610000 438610000 0 18413 459 16910 93441;93442;93443 113131;113132;113133 113133 3 TAVSSELRTEVEENQK Unmodified 1818.8959 0.89593544 3025 Q9NYU2;Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 0 0 0 1 By MS/MS By MS/MS 2.75 0.829 2 1 1 1 3 42.29 42.203 3 4.5674E-21 13952 20211116_3441_TMUAki_TMT10x_S_F3 163.34 146.35 4340000 7169000 51538 8222100 6133300 6213400 4664700 6391900 6518600 5358600 6287300 4041100 6693400 398600 8283500 5844900 6457700 4865800 6458900 6542300 5276100 6072300 4 4 2 4 4 4 4 4 4 4 4 1877900 2952000 0 3324200 3968700 4361900 2719700 2558200 2621500 2202000 2449000 1748400 2755900 164500 3380500 3772600 4339100 2821000 2681300 2665100 2165300 2367800 1 1 0 1 1 1 1 1 1 1 1 2462100 4217000 51538 4897900 2164700 1851500 1944900 3833700 3897100 3156600 3838300 2292700 3937400 234100 4903000 2072300 2118600 2044800 3777600 3877100 3110800 3704500 3 3 2 3 3 3 3 3 3 3 3 292140000 110660000 181480000 18414 3025 16911 93444;93445;93446;93447 113134;113135;113136;113137 113136 4 TAVTGSLSENDPLR Unmodified 1458.7314 0.7314363 2242 Q8NEJ9;Q8NEJ9-2 NGDN Neuroguidin yes no 0 0 0 0 By MS/MS 3 0 1 1 46.112 45.767 2 3.6293E-14 15399 20211116_3441_TMUAki_TMT10x_S_F3 142.04 119.4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18415 2242 16912 93448 113138 113138 1 TAVTTVPSMGIGLVK Oxidation (M) 1488.8222 0.82216556 2299 Q8WUH6 TMEM263 Transmembrane protein 263 yes yes 0 0 1 0 By MS/MS 1 0 1 1 57.131 57.131 3 0.0086726 16931 20211116_3428_TMUAki_TMT10x_P_F1 58.071 34.085 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18416 2299 16913 93449 113139 113139 2662 1 TAVVVGTITDDVR Unmodified 1344.7249 0.72489436 1534 Q07020;Q07020-2 RPL18 60S ribosomal protein L18 yes no 0 0 0 0 By MS/MS By MS/MS 3.6 1.08 3 4 4 4 7 8 53.75 53.741 2;3 2.3045E-65 16309 20211116_3442_TMUAki_TMT10x_S_F4 330.68 273.08 71292000 112210000 768090 125810000 85164000 85437000 72374000 79515000 74700000 74443000 90537000 66383000 104750000 5825000 126780000 81362000 89395000 74153000 80992000 76455000 72913000 86848000 19 19 11 19 19 19 19 19 19 19 19 24131000 36878000 231810 42705000 42030000 48419000 31289000 25489000 24736000 23904000 30063000 22469000 34433000 2418700 43240000 40041000 48458000 32097000 27025000 25640000 23411000 28836000 7 7 5 7 7 7 7 7 7 7 7 47162000 75331000 536280 83105000 43134000 37019000 41085000 54026000 49964000 50539000 60474000 43914000 70321000 3406300 83543000 41322000 40937000 42056000 53967000 50814000 49503000 58012000 12 12 6 12 12 12 12 12 12 12 12 30796000000 13976000000 16820000000 18417 1534 16914 93450;93451;93452;93453;93454;93455;93456;93457;93458;93459;93460;93461;93462;93463;93464 113140;113141;113142;113143;113144;113145;113146;113147;113148;113149;113150;113151;113152;113153;113154;113155;113156;113157;113158;113159;113160 113154 21 TAVVVGTITDDVRVQEVPK Unmodified 2025.1106 0.11061967 1534 Q07020;Q07020-2 RPL18 60S ribosomal protein L18 yes no 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 4 4 4 4 60.684 60.761 3;4 7.4726E-41 17819 20211116_3434_TMUAki_TMT10x_P_F6 206.28 173.89 54190000 88742000 459700 92917000 68381000 69206000 52650000 61913000 49478000 51853000 67453000 50457000 82821000 4686600 94141000 65172000 71801000 54129000 63016000 51112000 51057000 64513000 12 12 5 12 12 12 12 12 12 12 12 26436000 41886000 159820 43962000 31088000 47047000 28781000 29078000 22749000 24477000 31793000 24615000 39092000 2260500 44748000 29751000 47334000 29128000 30334000 23728000 24095000 30390000 6 6 2 6 6 6 6 6 6 6 6 27754000 46856000 299880 48955000 37293000 22159000 23869000 32835000 26729000 27376000 35660000 25842000 43729000 2426100 49393000 35421000 24467000 25001000 32682000 27384000 26962000 34123000 6 6 3 6 6 6 6 6 6 6 6 7452700000 3200400000 4252300000 18418 1534 16915 93465;93466;93467;93468;93469;93470;93471;93472 113161;113162;113163;113164;113165;113166;113167;113168;113169;113170;113171;113172 113164 12 TAWGQQPDLAANEAQLLR Unmodified 1981.0017 0.0017379196 3195 Q9UNM6;Q9UNM6-2 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 0 0 0 0 By MS/MS 5 0 1 1 65.54 65.666 3 0.0086505 21048 20211116_3433_TMUAki_TMT10x_P_F5 49.865 30.61 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18419 3195 16916 93473 113173 113173 1 TCAYTNHTVLPEALER Unmodified 1873.8992 0.89924668 620 P11216;P11217;P11217-2 PYGB;PYGM Glycogen phosphorylase, brain form;Glycogen phosphorylase, muscle form yes no 0 0 0 0 By MS/MS By MS/MS 4.67 1.25 1 2 2 1 3 3 43.612 43.803 3 4.9098E-29 11900 20211116_3431_TMUAki_TMT10x_P_F4 184.59 170.43 9313300 16174000 122300 17652000 16065000 18213000 11038000 13583000 12944000 12682000 13863000 8672100 15097000 926310 17912000 15281000 18416000 11518000 14017000 13117000 12423000 13345000 8 8 5 8 8 8 8 8 8 8 8 5729000 9590400 35269 10216000 12665000 14974000 8283800 8072500 7733200 7282100 8134600 5334100 8951200 550630 10449000 12033000 14806000 8614700 8532200 7905600 7144700 7834700 4 4 1 4 4 4 4 4 4 4 4 3584300 6583200 87030 7436400 3399400 3239500 2753800 5511000 5210700 5399800 5728400 3338000 6146000 375680 7463400 3248500 3610100 2903100 5485200 5211900 5278300 5509900 4 4 4 4 4 4 4 4 4 4 4 2726800000 1446300000 1280500000 18420 620 16917 93474;93475;93476;93477;93478;93479 113174;113175;113176;113177;113178;113179;113180;113181 113175 8 TCDISFSDPDDLLNFK Unmodified 1885.8404 0.8403944 1292 P61081 UBE2M NEDD8-conjugating enzyme Ubc12 yes yes 0 0 0 0 By MS/MS By MS/MS 4.25 0.924 3 4 4 1 5 7 78.729 78.705 2;3 1.4878E-29 28688 20211116_3441_TMUAki_TMT10x_S_F3 194.85 187.79 53254000 86705000 457800 82842000 66611000 74351000 70791000 47515000 44248000 53325000 66294000 49586000 80891000 4765600 84658000 63986000 75664000 70766000 49838000 46959000 51840000 63269000 12 12 9 12 12 12 12 12 12 12 12 18948000 29607000 125860 27924000 18478000 34181000 23006000 16448000 15317000 18460000 22059000 17641000 27620000 1461400 28700000 17824000 34037000 22861000 17679000 16158000 17946000 21071000 4 4 2 4 4 4 4 4 4 4 4 34306000 57098000 331940 54917000 48134000 40169000 47785000 31066000 28931000 34865000 44235000 31945000 53271000 3304200 55958000 46161000 41627000 47905000 32159000 30800000 33895000 42199000 8 8 7 8 8 8 8 8 8 8 8 10521000000 4700600000 5820200000 18421 1292 16918 93480;93481;93482;93483;93484;93485;93486;93487;93488;93489;93490;93491 113182;113183;113184;113185;113186;113187;113188;113189;113190;113191;113192;113193;113194 113186 13 TCDLEEFQTCLVR Unmodified 1669.744 0.74399159 2622 Q9BQ52;Q9BQ52-4;Q9BQ52-3 ELAC2 Zinc phosphodiesterase ELAC protein 2 yes no 0 0 0 0 By MS/MS 4 0 1 1 61.851 61.714 2 0.054804 19702 20211116_3442_TMUAki_TMT10x_S_F4 48.568 29.325 2710800 4551600 108940 4923700 3320100 2858900 3250900 3362600 3281500 3379800 3609000 2524800 4248500 334800 4965800 3188300 3051100 3302100 3393900 3348600 3300200 3471300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2710800 4551600 108940 4923700 3320100 2858900 3250900 3362600 3281500 3379800 3609000 2524800 4248500 334800 4965800 3188300 3051100 3302100 3393900 3348600 3300200 3471300 1 1 1 1 1 1 1 1 1 1 1 227600000 0 227600000 18422 2622 16919 93492 113195 113195 1 TCEGYNEIIFPHCACDSR Unmodified 2227.9085 0.90850752 2515 Q96L92;Q96L92-3;Q96L92-2 SNX27 Sorting nexin-27 yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 49.098 49.253 3 2.3904E-17 14069 20211116_3431_TMUAki_TMT10x_P_F4 144.25 134.19 2929700 4516800 24843 5357600 4771200 5355500 3579100 3427100 3288500 3048700 3705800 2727800 4217800 263370 5406200 4544600 5412600 3683800 3570400 3373000 2993100 3561900 3 3 2 3 3 3 3 3 3 3 3 2366600 3564900 14656 4205300 4262800 4921600 3231900 2726000 2516500 2424000 2893900 2203400 3328800 207950 4255600 4060500 4920300 3310000 2873400 2604800 2379800 2780000 2 2 1 2 2 2 2 2 2 2 2 563170 951940 10188 1152300 508450 433900 347270 701060 772000 624750 811850 524450 889010 55419 1150600 484090 492340 373830 697020 768210 613310 781930 1 1 1 1 1 1 1 1 1 1 1 717330000 422830000 294490000 18423 2515 16920 93493;93494 113196;113197;113198 113197 3 TCFVDCLIEQTHPEIR Unmodified 2016.9397 0.93973129 1757 Q15029;Q15029-2 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 By MS/MS By MS/MS 5.29 1.03 2 2 2 1 3 4 66.785 66.783 3 1.2369E-29 20326 20211116_3434_TMUAki_TMT10x_P_F6 195.6 184.56 37367000 63933000 330300 62966000 42744000 54550000 40091000 46267000 45287000 44585000 48086000 34791000 59652000 3025300 64178000 40909000 55905000 40966000 47408000 45943000 43614000 46300000 11 11 6 11 11 11 11 11 11 11 11 15916000 25803000 264980 25644000 18821000 34352000 19881000 20855000 19809000 19521000 20001000 14821000 24076000 1592100 26302000 18088000 34155000 20108000 21845000 20162000 19120000 19288000 5 5 4 5 5 5 5 5 5 5 5 21451000 38130000 65324 37322000 23923000 20198000 20210000 25411000 25478000 25065000 28085000 19970000 35576000 1433300 37876000 22821000 21750000 20857000 25563000 25781000 24494000 27012000 6 6 2 6 6 6 6 6 6 6 6 7801200000 3646600000 4154600000 18424 1757 16921 93495;93496;93497;93498;93499;93500;93501 113199;113200;113201;113202;113203;113204;113205;113206;113207;113208;113209;113210 113201 12 TCFVDCLIEQTHPEIRK Unmodified 2145.0347 0.034694307 1757 Q15029;Q15029-2 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 60.908 61.257 4 1.8957E-21 20391 20211116_3446_TMUAki_TMT10x_S_F7 161.14 138.66 38554000 65414000 1088700 67858000 50613000 50679000 40063000 44839000 43845000 42239000 49943000 35906000 61048000 4379900 68796000 48331000 52557000 41307000 45806000 44656000 41360000 47990000 6 6 6 6 6 6 6 6 6 6 6 13683000 23348000 502080 23314000 20196000 27692000 17449000 15374000 14880000 14259000 17412000 12744000 21786000 1693600 23852000 19326000 27664000 17763000 16219000 15340000 13972000 16718000 2 2 2 2 2 2 2 2 2 2 2 24871000 42066000 586650 44544000 30417000 22987000 22615000 29465000 28965000 27980000 32531000 23161000 39261000 2686400 44945000 29005000 24893000 23544000 29587000 29316000 27388000 31271000 4 4 4 4 4 4 4 4 4 4 4 5215300000 3040900000 2174300000 18425 1757 16922 93502;93503;93504;93505 113211;113212;113213;113214;113215;113216 113214 6 TCFYAEQGGQIYDEGYLVK Unmodified 2240.0096 0.0095849934 1104 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 5 0.816 1 1 1 1 2 69.794 69.869 3 9.6514E-05 22866 20211116_3433_TMUAki_TMT10x_P_F5 72.421 63.821 6620400 11419000 317500 11164000 7832100 15317000 8971100 8768100 7834400 9082500 9244600 6166600 10654000 861740 11469000 7557600 15201000 9005000 9254700 8070000 8857500 8874300 2 2 2 2 2 2 2 2 2 2 2 6620400 11419000 317500 11164000 7832100 15317000 8971100 8768100 7834400 9082500 9244600 6166600 10654000 861740 11469000 7557600 15201000 9005000 9254700 8070000 8857500 8874300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 713650000 713650000 0 18426 1104 16923 93506;93507;93508 113217;113218;113219;113220 113218 4 TCGFDFTGAVEDISK Unmodified 1645.7294 0.72938739 471 P00505;P00505-2 GOT2 Aspartate aminotransferase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.14 0.639 1 4 2 2 5 73.63 73.63 2;3 2.1811E-14 24336 20211116_3433_TMUAki_TMT10x_P_F5 156 139.75 27200000 43254000 346190 45359000 29648000 36027000 29207000 20889000 21699000 24433000 32625000 25328000 40369000 2537600 45985000 28433000 36938000 29417000 22108000 22791000 23717000 31134000 6 6 5 6 6 6 6 6 6 6 6 14311000 22434000 178320 23993000 15946000 24920000 16399000 10898000 11608000 13102000 17245000 13325000 20939000 1301200 24380000 15307000 25015000 16462000 11854000 12219000 12706000 16461000 3 3 2 3 3 3 3 3 3 3 3 12889000 20820000 167870 21366000 13702000 11107000 12808000 9990800 10091000 11331000 15380000 12002000 19430000 1236400 21605000 13126000 11923000 12955000 10254000 10572000 11011000 14673000 3 3 3 3 3 3 3 3 3 3 3 2763700000 1231700000 1532000000 18427 471 16924 93509;93510;93511;93512;93513;93514;93515 113221;113222;113223;113224;113225;113226;113227;113228 113221 8 TCHSFIINEK Unmodified 1247.5969 0.59685707 2588 Q99613;Q99613-2;B5ME19 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 4 2 37.453 37.494 3 8.0194E-05 9827 20211116_3433_TMUAki_TMT10x_P_F5 117.52 100.15 4165800 6254500 39862 8000600 9735000 7244000 4892800 3978900 4082700 3572700 5641000 3879000 5842700 457950 8027300 9214900 7353000 5191100 4198100 4244200 3506000 5393400 6 6 5 6 6 6 6 6 6 6 6 3260000 4880700 18124 6038500 8940500 6636300 4147400 3111500 3199000 2862000 4240500 3035500 4558500 364150 6087500 8453000 6644600 4428100 3334000 3332900 2805500 4058400 5 5 4 5 5 5 5 5 5 5 5 905830 1373800 21738 1962100 794510 607700 745460 867410 883640 710660 1400500 843580 1284100 93799 1939800 761890 708460 762990 864130 911250 700520 1335000 1 1 1 1 1 1 1 1 1 1 1 463150000 327720000 135420000 18428 2588 16925 93516;93517;93518;93519;93520;93521 113229;113230;113231;113232;113233;113234;113235;113236;113237 113229 9 TCLHAILNILEK Unmodified 1423.7857 0.78572048 2352 Q92621 NUP205 Nuclear pore complex protein Nup205 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 74.219 74.02 3 2.3744E-07 25199 20211116_3429_TMUAki_TMT10x_P_F2 124.12 100.89 5379400 8611800 71416 7853600 5672900 8922600 6542200 5329800 4992400 5669300 6422300 5009200 8032800 496560 8081500 5464300 8943100 6542600 5610400 5197400 5522900 6151100 3 3 2 3 3 3 3 3 3 3 3 3603900 5598900 55092 5287300 3712900 6705300 4405700 3580200 3198900 3637500 4284400 3355800 5223200 331550 5437100 3579500 6673200 4395300 3799500 3345700 3550200 4099400 2 2 1 2 2 2 2 2 2 2 2 1775600 3012900 16324 2566300 1960000 2217300 2136500 1749600 1793500 2031800 2137800 1653300 2809700 165000 2644400 1884800 2269900 2147300 1810900 1851800 1972700 2051600 1 1 1 1 1 1 1 1 1 1 1 1478300000 1244200000 234160000 18429 2352 16926 93522;93523;93524 113238;113239;113240 113238 3 TCLICADTFR Unmodified 1255.5689 0.56892776 1286 P61011;P61011-2 SRP54 Signal recognition particle 54 kDa protein yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 52.163 52.408 2 0.00055923 14772 20211116_3445_TMUAki_TMT10x_S_F6 104.39 83.447 10031000 16380000 162620 17919000 13303000 13731000 8894400 15365000 13519000 13284000 14518000 9340600 15290000 1029000 18109000 12654000 14283000 9395600 15477000 13587000 13060000 13974000 3 3 3 3 3 3 3 3 3 3 3 3327900 4844400 54216 5557800 6604700 8235200 4326700 4480600 3978800 3813700 4311800 3099000 4523100 372330 5659500 6278900 8139900 4497100 4725100 4074700 3752100 4149100 1 1 1 1 1 1 1 1 1 1 1 6702600 11535000 108400 12362000 6698000 5495600 4567700 10884000 9540500 9470400 10206000 6241600 10767000 656660 12450000 6375300 6143200 4898500 10752000 9511800 9307500 9824700 2 2 2 2 2 2 2 2 2 2 2 820860000 304450000 516420000 18430 1286 16927 93525;93526;93527 113241;113242;113243 113242 3 TCLLICYTTNAFPK Unmodified 1700.8266 0.82659901 1455 P84095 RHOG Rho-related GTP-binding protein RhoG yes yes 0 0 0 0 By MS/MS 4 0 1 1 74.999 75.029 3 0.017531 24646 20211116_3431_TMUAki_TMT10x_P_F4 51.939 33.106 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18431 1455 16928 93528 113244 113244 1 TCLLIVFSK Unmodified 1079.6049 0.60490256 1314;549 P08134;P62745;P61586 RHOC;RHOB;RHOA Rho-related GTP-binding protein RhoC;Rho-related GTP-binding protein RhoB;Transforming protein RhoA no no 0 0 0 0 By MS/MS By MS/MS 4.6 0.49 2 3 3 2 76.098 76.098 2 2.7998E-05 25039 20211116_3431_TMUAki_TMT10x_P_F4 154.84 108.27 28940000 46415000 2205.8 43443000 30033000 44206000 32293000 22321000 18379000 24646000 30077000 26944000 43299000 2129200 44540000 28835000 44495000 32207000 23869000 19721000 23975000 28652000 6 6 1 6 6 6 6 6 6 6 6 19865000 30683000 2205.8 29531000 20858000 34868000 22555000 15374000 12647000 16938000 20293000 18495000 28626000 1472300 30288000 20030000 34754000 22483000 16662000 13571000 16479000 19340000 4 4 1 4 4 4 4 4 4 4 4 9075200 15732000 0 13912000 9174600 9337300 9737600 6946700 5731600 7707400 9783600 8449100 14673000 656910 14252000 8804900 9740700 9723800 7206400 6150000 7496100 9312500 2 2 0 2 2 2 2 2 2 2 2 1412000000 860230000 551720000 18432 549;1314 16929 93529;93530;93531;93532;93533 113245;113246;113247;113248;113249;113250;113251 113246 7 TCLPGFPGAPCAIK Unmodified 1487.7265 0.72649104 1160 P51610;P51610-2;P51610-4 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 4 2 2 64.575 64.307 2;3 8.1691E-14 21442 20211116_3429_TMUAki_TMT10x_P_F2 152.54 125.94 20709000 37026000 269750 34446000 26893000 34100000 24136000 25946000 24118000 25387000 28339000 19284000 34539000 2049100 35317000 25733000 34577000 24625000 26775000 24686000 24817000 27207000 4 4 3 4 4 4 4 4 4 4 4 11997000 20910000 152130 20283000 17382000 25927000 15341000 14481000 14337000 14774000 16776000 11172000 19509000 1211800 20821000 16625000 25808000 15637000 15310000 14716000 14417000 16108000 2 2 2 2 2 2 2 2 2 2 2 8712200 16116000 117620 14162000 9511600 8172600 8794700 11465000 9780400 10613000 11563000 8112700 15030000 837260 14496000 9108900 8769200 8988900 11465000 9970000 10401000 11099000 2 2 1 2 2 2 2 2 2 2 2 2440000000 1401500000 1038500000 18433 1160 16930 93534;93535;93536;93537 113252;113253;113254;113255 113253 4 TCMIATISPGISSCEYTLNTLR Oxidation (M) 2503.1757 0.17568082 2596 Q99661;Q99661-2 KIF2C Kinesin-like protein KIF2C yes no 0 0 1 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 67.131 67.327 3 4.0479E-14 21138 20211116_3436_TMUAki_TMT10x_P_F8 122.53 103.93 4812700 7586300 9804.6 6782800 5334500 8138800 5855900 5861100 4797700 5465700 5666400 4480700 7075900 363400 6996600 5125300 8156400 5879800 6062300 4957900 5354400 5439300 3 3 1 3 3 3 3 3 3 3 3 3267000 4832700 9804.6 4383800 3758700 6432000 4048500 3906600 3393900 3615300 3653800 3041700 4507800 252460 4534600 3609700 6369400 4071200 4090700 3490600 3542900 3516700 2 2 1 2 2 2 2 2 2 2 2 1545600 2753600 0 2399000 1575800 1706800 1807300 1954500 1403700 1850400 2012600 1439000 2568100 110930 2462100 1515600 1787000 1808700 1971600 1467300 1811400 1922600 1 1 0 1 1 1 1 1 1 1 1 2137600000 1250500000 887150000 18434 2596 16931 93538;93539;93540 113256;113257;113258 113257 2833 3 TCMIATISPGISSCEYTLNTLR Unmodified 2487.1808 0.1807662 2596 Q99661;Q99661-2 KIF2C Kinesin-like protein KIF2C yes no 0 0 0 0 By matching By MS/MS 2 0 2 1 1 74.828 74.721 3 1.366E-19 24363 20211116_3440_TMUAki_TMT10x_S_F2 145.9 132.07 1039300 1923000 0 1745200 1479700 1182200 1377900 1116000 1277100 1135400 1679300 967580 1793700 81830 1784500 1415600 1237500 1399900 1138600 1317900 1108100 1607500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1039300 1923000 0 1745200 1479700 1182200 1377900 1116000 1277100 1135400 1679300 967580 1793700 81830 1784500 1415600 1237500 1399900 1138600 1317900 1108100 1607500 1 1 0 1 1 1 1 1 1 1 1 1103500000 454090000 649370000 18435 2596 16931 93541;93542 113259 113259 1 TCPLLLR Unmodified 871.49496 0.49495818 85 O00422-2;O00422 SAP18 Histone deacetylase complex subunit SAP18 yes no 0 0 0 0 By MS/MS By MS/MS 4.78 2.97 2 2 3 2 4 5 45.184 45.115 2 0.0013566 12015 20211116_3428_TMUAki_TMT10x_P_F1 138.48 50.898 22914000 36117000 91172 41816000 41770000 41111000 24990000 30414000 28649000 27341000 33007000 21336000 33722000 2178100 42246000 39630000 41684000 26339000 31371000 29140000 26830000 31706000 7 7 4 7 7 7 7 7 7 7 7 15579000 24030000 46929 28245000 34560000 34652000 18402000 20466000 19199000 18694000 22210000 14505000 22438000 1531800 28612000 32730000 34587000 19535000 21472000 19603000 18330000 21332000 4 4 2 4 4 4 4 4 4 4 4 7335600 12087000 44243 13571000 7209600 6459400 6588400 9947700 9450100 8647900 10797000 6830500 11284000 646290 13634000 6899900 7097500 6804000 9899200 9536400 8499500 10374000 3 3 2 3 3 3 3 3 3 3 3 1799200000 1168700000 630540000 18436 85 16932 93543;93544;93545;93546;93547;93548;93549;93550;93551 113260;113261;113262;113263;113264;113265;113266;113267;113268;113269 113260 10 TCTDIKPEWLVK Unmodified 1488.7647 0.76465068 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 0 1 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 57.827 58.12 3 0.00024663 18519 20211116_3435_TMUAki_TMT10x_P_F7 86.467 54.64 58490000 94812000 499490 116310000 85671000 72016000 65239000 44947000 35391000 45712000 74886000 54464000 88550000 5686300 116470000 81661000 75489000 66319000 47088000 38712000 44613000 71017000 4 4 3 4 4 4 4 4 4 4 4 25012000 39569000 242210 49062000 58317000 50960000 42525000 20420000 16220000 19336000 32784000 23291000 36957000 2765900 49409000 55535000 51112000 43147000 22270000 18240000 18929000 31113000 2 2 2 2 2 2 2 2 2 2 2 33478000 55243000 257280 67246000 27354000 21056000 22713000 24527000 19170000 26376000 42102000 31173000 51593000 2920500 67063000 26126000 24377000 23172000 24818000 20471000 25684000 39904000 2 2 1 2 2 2 2 2 2 2 2 3111400000 1992800000 1118700000 18437 196 16933 93552;93553;93554;93555;93556 113270;113271;113272;113273 113270 4 TCTFILR Unmodified 909.47422 0.47422274 2609 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 45.404 45.327 2 0.0013662 14140 20211116_3439_TMUAki_TMT10x_S_F1 138.37 98.264 26277000 40190000 44757 46115000 50749000 46339000 27022000 33492000 29800000 27964000 35884000 24465000 37524000 2325100 46630000 48051000 46905000 28736000 34536000 30411000 27539000 34428000 7 7 2 7 7 7 7 7 7 7 7 17906000 26832000 37285 30763000 43412000 39821000 19771000 21406000 19534000 18453000 23821000 16671000 25051000 1667400 31241000 41020000 39595000 21284000 22605000 20035000 18144000 22847000 4 4 1 4 4 4 4 4 4 4 4 8370800 13358000 7472.3 15352000 7336600 6517900 7250800 12086000 10266000 9510900 12063000 7793900 12472000 657700 15389000 7031100 7310000 7452600 11930000 10375000 9394900 11581000 3 3 1 3 3 3 3 3 3 3 3 3742100000 2560300000 1181800000 18438 2609 16934 93557;93558;93559;93560;93561;93562 113274;113275;113276;113277;113278;113279;113280 113278 7 TCTTVAFTQVNSEDK Unmodified 1699.7723 0.77231483 1358 P62424 RPL7A 60S ribosomal protein L7a yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 47.097 47.258 3 5.7684E-24 13504 20211116_3433_TMUAki_TMT10x_P_F5 185.95 163.75 6671900 9469900 23488 15251000 13042000 10538000 6846700 7598800 7458500 5888400 8876200 6212000 8858000 626760 15080000 12349000 10960000 7287800 7823100 7611300 5821400 8518700 3 3 2 3 3 3 3 3 3 3 3 4600100 6108900 2548.5 10319000 11402000 9065100 5216300 4726400 4850300 3752500 5843300 4282900 5716000 441530 10211000 10775000 9214700 5603300 4995200 4985600 3705000 5606100 2 2 1 2 2 2 2 2 2 2 2 2071700 3361000 20940 4932100 1640400 1472500 1630300 2872400 2608100 2135900 3032900 1929100 3142000 185230 4868800 1573900 1744900 1684500 2827800 2625600 2116400 2912600 1 1 1 1 1 1 1 1 1 1 1 754470000 259890000 494580000 18439 1358 16935 93563;93564 113281;113282;113283 113281 3 TCTTVAFTQVNSEDKGALAK Unmodified 2140.047 0.047033132 1358 P62424 RPL7A 60S ribosomal protein L7a yes yes 0 0 0 1 By MS/MS 6.33 0.471 2 1 3 51.013 51.4 3 3.9162E-51 15903 20211116_3435_TMUAki_TMT10x_P_F7 224.56 205 8936600 17992000 101330 11569000 38410000 43820000 22703000 27319000 24137000 20968000 21100000 8321500 16765000 1236700 12738000 36440000 42280000 23895000 28418000 24385000 20740000 20448000 3 3 2 3 3 3 3 3 3 3 3 8936600 17992000 101330 11569000 38410000 43820000 22703000 27319000 24137000 20968000 21100000 8321500 16765000 1236700 12738000 36440000 42280000 23895000 28418000 24385000 20740000 20448000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2057300000 2057300000 0 18440 1358 16936 93565;93566;93567 113284;113285;113286;113287 113286 4 TCVADESHAGCEK Unmodified 1462.5817 0.58167729 38 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 1 1 1 1 3 1 28.857 28.741 3 6.8888E-16 7049 20211116_3429_TMUAki_TMT10x_P_F2 178.84 143.63 + 646920 946970 744.65 714770 879050 861510 752660 773240 821320 683350 788640 602330 882750 54333 747780 839530 866620 772190 787940 831390 671100 761780 4 4 1 4 4 4 4 4 4 4 4 419130 637740 744.65 492140 578490 736140 541850 445590 486490 405430 495170 390240 594540 36070 515990 553710 728350 549830 466510 497650 397620 477400 3 3 1 3 3 3 3 3 3 3 3 227790 309220 0 222630 300550 125380 210810 327650 334830 277920 293470 212080 288220 18264 231780 285820 138270 222360 321430 333740 273480 284380 1 1 0 1 1 1 1 1 1 1 1 53461000 25327000 28134000 18441 38 16937 93568;93569;93570;93571 113288;113289;113290;113291 113289 4 TCVHTFFDHQDQVWGVK Unmodified 2102.9632 0.96324392 2758 Q9GZS3 WDR61 WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed yes yes 0 0 0 0 By MS/MS 7 0 1 1 54.931 55.451 4 1.0953E-07 18062 20211116_3446_TMUAki_TMT10x_S_F7 109.79 99.005 14060000 23543000 355940 26118000 14462000 12278000 12380000 14602000 13747000 14482000 18207000 13093000 21977000 1421200 26256000 13831000 13414000 12708000 14725000 14084000 14149000 17425000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14060000 23543000 355940 26118000 14462000 12278000 12380000 14602000 13747000 14482000 18207000 13093000 21977000 1421200 26256000 13831000 13414000 12708000 14725000 14084000 14149000 17425000 2 2 1 2 2 2 2 2 2 2 2 582240000 0 582240000 18442 2758 16938 93572 113292;113293 113292 2 TCVVVAEERPR Unmodified 1314.6714 0.671419 3057 Q9P265;Q9Y2E4 DIP2B;DIP2C Disco-interacting protein 2 homolog B;Disco-interacting protein 2 homolog C yes no 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 30.954 30.805 3 6.1201E-16 9360 20211116_3441_TMUAki_TMT10x_S_F3 202.65 167.93 700980 1050600 5849.9 1132600 950150 1023600 690210 593810 558040 603500 823950 652720 980670 66941 1148000 904860 1039800 709610 625730 582930 589010 786600 2 2 1 2 2 2 2 2 2 2 2 526120 745210 5849.9 826990 752960 851390 528510 425570 396010 444420 598280 489910 695670 52248 838250 716690 856260 543720 454750 415840 433270 570870 1 1 1 1 1 1 1 1 1 1 1 174860 305440 0 305570 197190 172200 161700 168240 162030 159080 225670 162820 285010 14693 309730 188180 183570 165890 170980 167090 155740 215730 1 1 0 1 1 1 1 1 1 1 1 108960000 67105000 41857000 18443 3057 16939 93573;93574;93575 113294;113295 113295 2 TCYPLESRPSLSLGTITDEEMK Oxidation (M) 2542.1931 0.19310502 1741 Q14980;Q14980-2;Q14980-5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 1 1 By MS/MS By MS/MS 5.14 0.833 2 2 3 4 3 60.969 61.017 3;4 1.9652E-10 19382 20211116_3442_TMUAki_TMT10x_S_F4 110.75 96.875 20767000 36154000 216600 32451000 25164000 39870000 24027000 30479000 28938000 28936000 29929000 19337000 33721000 1861300 33478000 24105000 39948000 24583000 31417000 29260000 28324000 28841000 7 7 4 7 7 7 7 7 7 7 7 12582000 22343000 103110 20610000 15966000 31638000 16410000 19219000 18716000 18149000 18236000 11715000 20842000 1062800 21313000 15318000 31271000 16693000 20135000 18922000 17769000 17606000 4 4 1 4 4 4 4 4 4 4 4 8184500 13811000 113500 11841000 9198600 8232100 7616900 11261000 10223000 10787000 11694000 7621500 12880000 798530 12165000 8787200 8677000 7889500 11282000 10338000 10554000 11235000 3 3 3 3 3 3 3 3 3 3 3 4354500000 2382700000 1971800000 18444 1741 16940 93576;93577;93578;93579;93580;93581;93582 113296;113297;113298;113299;113300;113301;113302 113300 2352 7 TDAAVSFAK Acetyl (Protein N-term) 950.47091 0.4709115 502 P05141 SLC25A5 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed yes yes 1 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 54.353 54.075 2 3.9517E-05 17675 20211116_3430_TMUAki_TMT10x_P_F3 81.548 69.643 8051300 12318000 51635 14933000 13447000 12232000 8424300 9449400 10147000 8265800 10886000 7496800 11504000 768950 15009000 12769000 12566000 8861100 9712500 10274000 8121600 10478000 2 2 1 2 2 2 2 2 2 2 2 4303600 5970600 0 7952500 9899400 8990700 4906700 4824400 5212500 4168100 5637200 4006900 5578600 412920 7988400 9365000 9001500 5247600 5095700 5304500 4097800 5424900 1 1 0 1 1 1 1 1 1 1 1 3747700 6347900 51635 6980600 3548100 3241700 3517600 4625100 4934800 4097700 5248400 3489900 5925600 356040 7020800 3404400 3564100 3613500 4616800 4969400 4023700 5053200 1 1 1 1 1 1 1 1 1 1 1 951510000 481000000 470510000 18445 502 16941 93583;93584 113303;113304 113303 2 TDACFIR Unmodified 881.40654 0.40653711 945 P35998;P35998-2 PSMC2 26S protease regulatory subunit 7 yes no 0 0 0 0 By MS/MS 4 0 1 1 35.152 35.259 2 0.0095333 8780 20211116_3442_TMUAki_TMT10x_S_F4 99.139 63.89 169690 307650 1098.7 307570 208300 152930 206580 133010 137580 132100 251740 158000 287070 15633 311470 199750 164890 207500 136220 147030 129050 239310 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 169690 307650 1098.7 307570 208300 152930 206580 133010 137580 132100 251740 158000 287070 15633 311470 199750 164890 207500 136220 147030 129050 239310 1 1 1 1 1 1 1 1 1 1 1 20423000 0 20423000 18446 945 16942 93585 113305 113305 1 TDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFK Unmodified 3621.5867 0.58668872 2366 Q92804;Q92804-2 TAF15 TATA-binding protein-associated factor 2N yes no 0 0 0 0 By MS/MS 1.67 0.471 1 2 3 41.092 40.954 3;4 5.7132E-31 26147 20211116_3428_TMUAki_TMT10x_P_F1 149.29 146.66 2280600 3809200 0 3495500 2104000 3729700 2345200 1917200 2025100 2008300 2778900 2123500 3553200 0 3591700 2023500 3744400 2356300 2043500 2101000 1957700 2657300 3 3 0 3 3 3 3 3 3 3 3 2280600 3809200 0 3495500 2104000 3729700 2345200 1917200 2025100 2008300 2778900 2123500 3553200 0 3591700 2023500 3744400 2356300 2043500 2101000 1957700 2657300 3 3 0 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1007800000 1007800000 0 18447 2366 16943 93586;93587;93588 113306;113307;113308 113306 3 TDAPLNIR Unmodified 898.48723 0.48723027 1578 Q12931;Q12931-2 TRAP1 Heat shock protein 75 kDa, mitochondrial yes no 0 0 0 0 By MS/MS 4 0 1 1 33.909 33.981 2 0.0027911 8282 20211116_3442_TMUAki_TMT10x_S_F4 105.25 59.868 772570 1327900 7960.6 1453300 806510 660070 811630 857810 947290 789320 1187000 719350 1239500 65048 1461900 773490 725810 827200 860130 966270 773710 1137700 6 6 4 6 6 6 6 6 6 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 772570 1327900 7960.6 1453300 806510 660070 811630 857810 947290 789320 1187000 719350 1239500 65048 1461900 773490 725810 827200 860130 966270 773710 1137700 6 6 4 6 6 6 6 6 6 6 6 12113000 0 12113000 18448 1578 16944 93589 113309;113310;113311;113312;113313;113314 113312 6 TDASSASSFLDSDELER Unmodified 1828.7963 0.79628098 1711 Q14498;Q14498-2;Q14498-3 RBM39 RNA-binding protein 39 yes no 0 0 0 0 By MS/MS By MS/MS 2 0.816 4 4 4 6 6 58.022 57.785 2;3 3.0498E-163 17229 20211116_3428_TMUAki_TMT10x_P_F1 431.77 391.42 132800000 216560000 1140200 248200000 215940000 258120000 158020000 222250000 220340000 197780000 202970000 123660000 202190000 12871000 251120000 205640000 261530000 165240000 227050000 220810000 194170000 196340000 17 17 8 17 17 17 17 17 17 17 17 76007000 120620000 902670 140690000 168370000 214200000 118720000 129390000 127140000 113630000 115080000 70775000 112630000 8155300 143210000 160230000 211770000 123280000 135360000 128550000 111620000 111390000 10 10 4 10 10 10 10 10 10 10 10 56794000 95937000 237530 107510000 47568000 43914000 39299000 92863000 93195000 84151000 87889000 52882000 89562000 4715300 107910000 45411000 49759000 41963000 91686000 92263000 82545000 84948000 7 7 4 7 7 7 7 7 7 7 7 8156000000 5543900000 2612100000 18449 1711 16945 93590;93591;93592;93593;93594;93595;93596;93597;93598;93599;93600;93601 113315;113316;113317;113318;113319;113320;113321;113322;113323;113324;113325;113326;113327;113328;113329;113330;113331;113332 113318 18 TDAVEALTALNHYQIR Unmodified 1813.9323 0.93226137 2310 Q8WVV9;Q8WVV9-5;Q8WVV9-4 HNRNPLL Heterogeneous nuclear ribonucleoprotein L-like yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 64.996 65.4 3 2.5949E-05 22167 20211116_3446_TMUAki_TMT10x_S_F7 89.136 74.164 3492500 6263200 192810 6605600 4196700 4382300 4533500 4566700 3822200 4006200 4840100 3253300 5845500 479110 6681400 4044100 4605700 4558900 4617000 3955700 3935800 4637600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3492500 6263200 192810 6605600 4196700 4382300 4533500 4566700 3822200 4006200 4840100 3253300 5845500 479110 6681400 4044100 4605700 4558900 4617000 3955700 3935800 4637600 1 1 1 1 1 1 1 1 1 1 1 894700000 0 894700000 18450 2310 16946 93602;93603 113333;113334 113334 2 TDCDIEDDRLAAMFR Oxidation (M) 1842.7876 0.78764732 1591 Q13085;Q13085-4;Q13085-3;Q13085-2 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 0 0 1 1 By MS/MS 2 0 1 1 48.944 48.84 3 0.017421 13805 20211116_3440_TMUAki_TMT10x_S_F2 52.522 40.546 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18451 1591 16947 93604 113335 113335 2149 1 TDCSPIQFESAWALTNIASGTSEQTK Unmodified 2841.3127 0.31270289 1172 P52292 KPNA2 Importin subunit alpha-1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.62 0.992 1 3 2 2 3 5 78.957 78.963 3;4 5.0038E-24 25685 20211116_3445_TMUAki_TMT10x_S_F6 155.87 143.06 14777000 24658000 150020 23256000 15721000 19568000 17989000 10469000 9736000 11507000 17189000 13760000 23003000 1314600 23769000 15136000 19958000 17873000 11134000 10530000 11196000 16351000 5 5 3 5 5 5 5 5 5 5 5 6907800 10830000 20913 10469000 6492600 11563000 7346600 5609500 5376000 5877000 7745000 6431900 10104000 574720 10722000 6247400 11579000 7346300 6011900 5639400 5728800 7398000 2 2 1 2 2 2 2 2 2 2 2 7869300 13828000 129110 12788000 9228000 8004400 10642000 4859400 4360000 5630000 9444200 7327600 12899000 739930 13047000 8888200 8378700 10527000 5122500 4890800 5466800 8953100 3 3 2 3 3 3 3 3 3 3 3 7964300000 3294500000 4669800000 18452 1172 16948 93605;93606;93607;93608;93609;93610;93611;93612 113336;113337;113338;113339;113340 113339 5 TDDEVVQREEEAIQLDGLNASQIR Unmodified 2727.3311 0.33113014 672 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 1 By MS/MS By MS/MS 1.67 0.745 6 4 2 6 6 66.587 66.36 2;3;4 3.9808E-176 22672 20211116_3439_TMUAki_TMT10x_S_F1 412.93 373.85 132180000 233150000 1176200 206810000 139370000 205530000 167350000 109020000 120010000 128240000 165060000 123080000 217460000 8782500 212820000 134380000 207290000 166820000 116290000 125760000 124460000 157830000 18 18 7 18 18 18 18 18 18 18 18 94444000 163500000 1119000 144640000 90786000 160440000 114900000 77140000 86436000 90688000 115800000 87943000 152490000 6180900 149130000 87706000 160600000 114410000 83041000 90222000 88012000 110800000 11 11 5 11 11 11 11 11 11 11 11 37740000 69657000 57221 62167000 48579000 45089000 52447000 31879000 33572000 37555000 49254000 35139000 64969000 2601600 63695000 46673000 46691000 52412000 33249000 35536000 36444000 47028000 7 7 2 7 7 7 7 7 7 7 7 44266000000 23102000000 21164000000 18453 672 16949 93613;93614;93615;93616;93617;93618;93619;93620;93621;93622;93623;93624 113341;113342;113343;113344;113345;113346;113347;113348;113349;113350;113351;113352;113353;113354;113355;113356;113357;113358;113359;113360 113355 20 TDDVHAK Unmodified 784.37153 0.37153181 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 25.689 25.426 3 0.038494 5292 20211116_3429_TMUAki_TMT10x_P_F2 57.103 32.768 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18454 2334 16950 93625;93626 113361;113362 113361 2 TDDYGRDLSSVQTLLTK Unmodified 1910.9585 0.9585357 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS 6 0 1 1 69.235 69.15 3 3.602E-15 21708 20211116_3445_TMUAki_TMT10x_S_F6 133.93 108.61 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18455 1663 16951 93627 113363 113363 1 TDDYLDQPCLETVNR Unmodified 1837.8152 0.81524228 884 P31150 GDI1 Rab GDP dissociation inhibitor alpha yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.816 4 4 4 6 6 53.734 53.52 2;3 5.7274E-44 15477 20211116_3428_TMUAki_TMT10x_P_F1 273.23 246.72 36964000 61515000 438640 71073000 54541000 58295000 41634000 47619000 45073000 42054000 51423000 34418000 57435000 3435500 71640000 51980000 59935000 43013000 48788000 45929000 41301000 49409000 17 17 8 17 17 17 17 17 17 17 17 19834000 31874000 262410 37759000 38900000 45682000 29294000 23933000 23066000 21539000 26462000 18468000 29763000 1983000 38223000 37062000 45560000 30024000 25359000 23859000 21135000 25422000 8 8 4 8 8 8 8 8 8 8 8 17130000 29641000 176230 33314000 15641000 12613000 12340000 23686000 22007000 20514000 24961000 15950000 27672000 1452500 33417000 14917000 14375000 12989000 23429000 22070000 20166000 23987000 9 9 4 9 9 9 9 9 9 9 9 5376000000 3585000000 1790900000 18456 884 16952 93628;93629;93630;93631;93632;93633;93634;93635;93636;93637;93638;93639 113364;113365;113366;113367;113368;113369;113370;113371;113372;113373;113374;113375;113376;113377;113378;113379;113380 113364 17 TDDYLDQPCYETINR Unmodified 1901.8102 0.8101569 1133 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 0 By MS/MS By MS/MS 2.15 0.948 4 4 4 1 6 7 51.96 51.782 2;3 7.2504E-85 16268 20211116_3429_TMUAki_TMT10x_P_F2 335.85 268.15 36233000 62328000 463680 74547000 54729000 69029000 41809000 53359000 55819000 47201000 54506000 33737000 58204000 3310700 75105000 52155000 70311000 43518000 54858000 56127000 46352000 52621000 16 16 6 16 16 16 16 16 16 16 16 19301000 33629000 250630 39940000 43628000 57713000 32993000 30871000 31564000 26013000 30490000 17972000 31403000 1990900 40566000 41568000 57094000 33978000 32597000 32136000 25606000 29445000 8 8 4 8 8 8 8 8 8 8 8 16932000 28699000 213050 34607000 11101000 11317000 8815900 22488000 24255000 21187000 24017000 15765000 26802000 1319800 34539000 10586000 13216000 9539700 22261000 23991000 20746000 23175000 8 8 2 8 8 8 8 8 8 8 8 15967000000 10432000000 5535600000 18457 1133 16953 93640;93641;93642;93643;93644;93645;93646;93647;93648;93649;93650;93651;93652 113381;113382;113383;113384;113385;113386;113387;113388;113389;113390;113391;113392;113393;113394;113395;113396 113386 16 TDEFQLHTNVNDGTEFGGSIYQK Unmodified 2599.1827 0.18267499 760 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.43 1.18 1 2 4 4 3 8 6 61.106 61.088 3;4 1.1358E-21 20616 20211116_3430_TMUAki_TMT10x_P_F3 158.53 143.76 154070000 282220000 2863400 274880000 185040000 235190000 192610000 185190000 181260000 186000000 210630000 143470000 263320000 15283000 280350000 177750000 240920000 194620000 190840000 185940000 181630000 202280000 26 26 17 26 26 26 26 26 26 26 26 69000000 120930000 1141700 114940000 78441000 137740000 87082000 82172000 76539000 80195000 89854000 64252000 112810000 6675800 118020000 75484000 137670000 87553000 86292000 78800000 78404000 86267000 14 14 8 14 14 14 14 14 14 14 14 85069000 161300000 1721700 159940000 106600000 97447000 105520000 103020000 104720000 105810000 120780000 79218000 150500000 8607100 162330000 102260000 103250000 107070000 104540000 107140000 103220000 116020000 12 12 9 12 12 12 12 12 12 12 12 27677000000 14365000000 13311000000 18458 760 16954 93653;93654;93655;93656;93657;93658;93659;93660;93661;93662;93663;93664;93665;93666 113397;113398;113399;113400;113401;113402;113403;113404;113405;113406;113407;113408;113409;113410;113411;113412;113413;113414;113415;113416;113417;113418;113419;113420;113421;113422 113399 26 TDEGIAYR Unmodified 923.43486 0.43486035 899 P32119 PRDX2 Peroxiredoxin-2 yes yes 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 32.345 32.281 2 0.0010255 8827 20211116_3439_TMUAki_TMT10x_S_F1 129.55 87.902 3758200 6306200 23758 5596600 5055500 5727600 4111000 2518500 3065400 2922500 4520000 3499400 5881700 351890 5761500 4825200 5754700 4187000 2734700 3215900 2837600 4315200 4 4 4 4 4 4 4 4 4 4 4 3042600 5098100 17084 4440000 4339200 5056800 3208500 2043500 2523300 2389000 3634300 2833100 4754600 286330 4585200 4133200 5045700 3292400 2240100 2636400 2319000 3471500 3 3 3 3 3 3 3 3 3 3 3 715550 1208100 6674.7 1156600 716330 670860 902520 474980 542110 533520 885680 666290 1127100 65555 1176300 691940 708990 894570 494570 579470 518650 843750 1 1 1 1 1 1 1 1 1 1 1 147060000 107700000 39358000 18459 899 16955 93667;93668;93669;93670 113423;113424;113425;113426;113427 113426 5 TDEQGLIVEDLVEEVGREEDPHEGK Unmodified 2821.3254 0.32537606 749 P20936;P20936-3;P20936-2;P20936-4 RASA1 Ras GTPase-activating protein 1 yes no 0 0 0 1 By MS/MS 1 0 1 1 77.241 77.188 4 2.8808E-05 27087 20211116_3439_TMUAki_TMT10x_S_F1 71.052 64.694 3830600 7013100 0 5662600 5794500 5433000 5040000 4863900 4478100 4790400 5527200 3566600 6538900 337100 5868800 5536600 5536100 5134400 4971800 4617500 4681600 5299400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3830600 7013100 0 5662600 5794500 5433000 5040000 4863900 4478100 4790400 5527200 3566600 6538900 337100 5868800 5536600 5536100 5134400 4971800 4617500 4681600 5299400 1 1 0 1 1 1 1 1 1 1 1 1023600000 0 1023600000 18460 749 16956 93671 113428 113428 1 TDEREFFLASYNR Unmodified 1646.7689 0.76888444 2256 Q8NG68 TTL Tubulin--tyrosine ligase yes yes 0 0 0 1 By MS/MS 4 0 1 1 51.547 51.654 3 0.04611 15488 20211116_3442_TMUAki_TMT10x_S_F4 46.89 33.462 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18461 2256 16957 93672 113429 113429 1 TDFFIGGEEGMAEK Oxidation (M) 1545.6657 0.6657245 3226 Q9Y266 NUDC Nuclear migration protein nudC yes yes 0 0 1 0 By MS/MS By MS/MS 3.29 0.7 1 3 3 4 3 59.747 59.621 2;3 5.0588E-19 20018 20211116_3430_TMUAki_TMT10x_P_F3 145.91 127.6 22723000 37181000 91886 39334000 33299000 50508000 30626000 30025000 28889000 27703000 31518000 21157000 34702000 2067800 40142000 31864000 50305000 31151000 31492000 29558000 27152000 30323000 5 5 2 5 5 5 5 5 5 5 5 19763000 31370000 91886 33707000 29408000 47429000 27655000 24626000 23712000 23144000 26754000 18402000 29281000 1814900 34427000 28156000 46959000 28022000 26144000 24404000 22665000 25715000 4 4 2 4 4 4 4 4 4 4 4 2959400 5810400 0 5627400 3891800 3079400 2970100 5398900 5176300 4559000 4763200 2755400 5421000 252860 5715700 3708100 3346400 3129200 5347100 5154800 4487100 4607700 1 1 0 1 1 1 1 1 1 1 1 2987400000 2362800000 624610000 18462 3226 16958 93673;93674;93675;93676;93677;93678;93679 113430;113431;113432;113433;113434;113435;113436;113437 113433 3219 8 TDFFIGGEEGMAEK Unmodified 1529.6708 0.67080988 3226 Q9Y266 NUDC Nuclear migration protein nudC yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 66.816 66.43 3 7.977E-07 22866 20211116_3430_TMUAki_TMT10x_P_F3 98.439 76.882 6149000 9569300 60431 9800500 7092000 9065300 7489100 5143300 4364000 5057200 7623600 5725800 8930000 579320 9970800 6813800 9192300 7479000 5424700 4692100 4942600 7253300 2 2 2 2 2 2 2 2 2 2 2 4077900 5878400 36909 5962800 4660000 6855000 5222700 3148500 2672000 3134100 4866300 3797200 5485500 380630 6090400 4484600 6845100 5189200 3387800 2907700 3061600 4626500 1 1 1 1 1 1 1 1 1 1 1 2071100 3690800 23522 3837600 2432000 2210300 2266400 1994800 1692100 1923000 2757200 1928600 3444500 198690 3880300 2329200 2347200 2289800 2036900 1784300 1881100 2626800 1 1 1 1 1 1 1 1 1 1 1 1001500000 435200000 566250000 18463 3226 16958 93680;93681;93682;93683 113438;113439;113440;113441 113439 4 TDGEPGPQGWSPR Unmodified 1382.6215 0.62149192 2822 Q9H773 DCTPP1 dCTP pyrophosphatase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.943 1 2 1 2 38.222 38.322 2 1.3437E-22 9857 20211116_3442_TMUAki_TMT10x_S_F4 209.19 172.49 703050 1065600 0 1573500 2136400 1350400 1029100 590590 799520 582240 1036500 654590 996230 64309 1566100 2020500 1372400 1094600 638560 831830 568990 992550 2 2 0 2 2 2 2 2 2 2 2 545810 810540 0 1158100 2045100 1298300 937570 519820 678920 507750 793430 508190 757620 64309 1159000 1933000 1296500 1000900 567440 706070 496390 761850 1 1 0 1 1 1 1 1 1 1 1 157240 255080 0 415400 91276 52034 91516 70770 120600 74495 243080 146400 238620 0 407020 87526 75843 93716 71120 125760 72603 230700 1 1 0 1 1 1 1 1 1 1 1 56152000 38048000 18105000 18464 2822 16959 93684;93685;93686 113442;113443;113444 113444 3 TDGFAEAIHSPQVAGVPR Unmodified 1850.9275 0.92751034 641 P12270 TPR Nucleoprotein TPR yes yes 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 49.625 49.77 3 1.4447E-06 14547 20211116_3433_TMUAki_TMT10x_P_F5 87.088 64.482 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18465 641 16960 93687;93688 113445;113446 113445 2 TDGFGIDTCR Unmodified 1140.487 0.48697227 490 P04632 CAPNS1 Calpain small subunit 1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 41.482 41.536 2 0.0002946 12545 20211116_3430_TMUAki_TMT10x_P_F3 114.5 94.263 405670 587620 0 734360 1374300 867090 462660 463240 519630 366770 596560 377710 548860 45871 740790 1294700 866070 518730 488480 528880 362180 573100 1 1 0 1 1 1 1 1 1 1 1 405670 587620 0 734360 1374300 867090 462660 463240 519630 366770 596560 377710 548860 45871 740790 1294700 866070 518730 488480 528880 362180 573100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36055000 36055000 0 18466 490 16961 93689 113447 113447 1 TDGLVAVHPK Unmodified 1035.5713 0.57129425 2794 Q9H2U1;Q9H2U1-3;Q9H2U1-2 DHX36 ATP-dependent RNA helicase DHX36 yes no 0 0 0 0 By MS/MS 5 0 1 1 36.311 36.473 3 0.072806 8107 20211116_3444_TMUAki_TMT10x_S_F5 43.77 31.544 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18467 2794 16962 93690 113448 113448 1 TDIQIALPSGCYGR Unmodified 1549.7559 0.75587691 908 P33316;P33316-2 DUT Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.71 1.03 2 4 4 4 8 6 58.855 59.128 2;3 5.3357E-37 17518 20211116_3445_TMUAki_TMT10x_S_F6 241.35 186.93 62154000 101830000 337890 100860000 80934000 89973000 66912000 73199000 68292000 68122000 77763000 57868000 95011000 4501600 102800000 77221000 91953000 68648000 75119000 69751000 66741000 74722000 15 15 5 15 15 15 15 15 15 15 15 28267000 45075000 108000 44567000 37054000 58640000 33647000 33634000 29162000 29662000 34267000 26316000 42058000 1995900 45712000 35413000 58308000 34169000 35340000 30044000 29133000 32898000 7 7 1 7 7 7 7 7 7 7 7 33887000 56751000 229890 56297000 43880000 31333000 33265000 39566000 39130000 38460000 43496000 31552000 52953000 2505800 57091000 41808000 33645000 34478000 39779000 39706000 37607000 41824000 8 8 4 8 8 8 8 8 8 8 8 20239000000 11298000000 8940800000 18468 908 16963 93691;93692;93693;93694;93695;93696;93697;93698;93699;93700;93701;93702;93703;93704 113449;113450;113451;113452;113453;113454;113455;113456;113457;113458;113459;113460;113461;113462;113463;113464;113465 113462 17 TDITYPAGFMDVISIDK Oxidation (M) 1900.9128 0.91283106 1362 P62701 RPS4X 40S ribosomal protein S4, X isoform yes yes 0 0 1 0 By MS/MS By MS/MS 5.43 1.18 1 2 4 4 3 8 6 77.31 77.315 2;3 1.4256E-10 24614 20211116_3434_TMUAki_TMT10x_P_F6 132.03 116.46 73132000 128120000 392270 102400000 81993000 129840000 87546000 89445000 87456000 93448000 98049000 68089000 119450000 5741800 106690000 78730000 129680000 88509000 93100000 89352000 91101000 94256000 16 16 3 16 16 16 16 16 16 16 16 43245000 73977000 277160 61893000 41190000 91929000 48601000 52565000 51050000 53893000 56757000 40265000 68984000 3475300 64443000 39676000 90914000 48986000 55471000 52030000 52580000 54575000 9 9 2 9 9 9 9 9 9 9 9 29887000 54140000 115110 40504000 40803000 37916000 38945000 36880000 36406000 39555000 41292000 27825000 50467000 2266500 42245000 39054000 38762000 39523000 37629000 37321000 38521000 39682000 7 7 1 7 7 7 7 7 7 7 7 14579000000 8739200000 5839700000 18469 1362 16964 93705;93706;93707;93708;93709;93710;93711;93712;93713;93714;93715;93716;93717;93718 113466;113467;113468;113469;113470;113471;113472;113473;113474;113475;113476;113477;113478;113479;113480;113481 113471 1827 16 TDITYPAGFMDVISIDK Unmodified 1884.9179 0.91791644 1362 P62701 RPS4X 40S ribosomal protein S4, X isoform yes yes 0 0 0 0 By MS/MS By MS/MS 6.27 1.21 1 2 3 3 2 6 5 79.502 79.51 2;3 2.2425E-29 25888 20211116_3445_TMUAki_TMT10x_S_F6 184.99 168.33 44523000 74827000 230240 71705000 49488000 43177000 53338000 21456000 20518000 25822000 46208000 41455000 69810000 3724000 72944000 47546000 45257000 52886000 23042000 23221000 25039000 43780000 9 9 5 9 9 9 9 9 9 9 9 14687000 24449000 3191.8 22846000 13820000 19316000 17137000 7541000 6896500 8802900 15673000 13675000 22807000 1187900 23367000 13334000 19631000 16892000 8299200 7775500 8545400 14848000 3 3 1 3 3 3 3 3 3 3 3 29836000 50378000 227050 48859000 35668000 23861000 36201000 13915000 13621000 17019000 30535000 27780000 47002000 2536200 49577000 34212000 25626000 35993000 14743000 15445000 16493000 28933000 6 6 4 6 6 6 6 6 6 6 6 11884000000 3815900000 8067800000 18470 1362 16964 93719;93720;93721;93722;93723;93724;93725;93726;93727;93728;93729 113482;113483;113484;113485;113486;113487;113488;113489;113490;113491;113492;113493 113488 12 TDLFYER Unmodified 942.4447 0.44469675 2069 Q7RTV0 PHF5A PHD finger-like domain-containing protein 5A yes yes 0 0 0 0 By MS/MS By matching 3.33 0.471 2 1 2 1 47.419 47.34 2 0.023219 13357 20211116_3431_TMUAki_TMT10x_P_F4 84.568 55.23 5338700 7858200 66626 9759200 15092000 13250000 7391500 7923900 8686400 6391900 7782000 4971400 7339600 641310 9874000 14281000 13164000 7940200 8279400 8748100 6305700 7535000 3 3 3 3 3 3 3 3 3 3 3 5338700 7858200 66626 9759200 15092000 13250000 7391500 7923900 8686400 6391900 7782000 4971400 7339600 641310 9874000 14281000 13164000 7940200 8279400 8748100 6305700 7535000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 412220000 359920000 52303000 18471 2069 16965 93730;93731;93732 113494;113495;113496 113496 3 TDLNPDNLQGGDDLDPNYVLSSR Unmodified 2517.1619 0.16193955 642 P12277 CKB Creatine kinase B-type yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.707 1 2 1 1 3 70.207 69.949 3 1.4715E-36 25227 20211116_3441_TMUAki_TMT10x_S_F3 188.24 172.76 10138000 17677000 182970 17239000 11237000 12314000 11659000 9593900 9211000 10154000 12644000 9440600 16493000 1005200 17544000 10794000 12788000 11728000 9908500 9599500 9894300 12091000 7 7 5 7 7 7 7 7 7 7 7 3096100 5177700 68687 5104300 2950900 5322700 3081900 2958600 2722500 3059900 3840200 2883200 4831000 318670 5215700 2836900 5355800 3108100 3130400 2825100 2984300 3669900 2 2 2 2 2 2 2 2 2 2 2 7041900 12499000 114280 12134000 8285600 6991700 8577000 6635400 6488500 7094500 8803700 6557400 11662000 686540 12328000 7957500 7431900 8620100 6778100 6774500 6910000 8420900 5 5 3 5 5 5 5 5 5 5 5 3352800000 1168000000 2184800000 18472 642 16966 93733;93734;93735;93736 113497;113498;113499;113500;113501;113502;113503 113501 7 TDLSCDAAAATTILGGDRR Unmodified 1962.9429 0.94290241 158 O15069 NACAD NAC-alpha domain-containing protein 1 yes yes 0 0 0 1 By MS/MS 4 0 1 1 58.784 58.914 3 0.10886 18027 20211116_3431_TMUAki_TMT10x_P_F4 27.678 14.91 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18473 158 16967 93737 113504 113504 1 TDLVPAFQNLMK Oxidation (M) 1391.7119 0.71188683 869 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 1 0 By MS/MS By MS/MS 7.75 0.433 1 3 1 3 67.988 68.043 3 0.0011838 23230 20211116_3446_TMUAki_TMT10x_S_F7 68.515 46.958 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18474 869 16968 93738;93739;93740;93741 113505;113506;113507;113508 113506 1038 4 TDMDNQIVVSDYAQMDR 2 Oxidation (M) 2031.8514 0.85136979 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 2 0 By MS/MS By MS/MS 2.09 0.793 3 4 4 5 6 45.069 44.918 2;3 2.0627E-05 12196 20211116_3440_TMUAki_TMT10x_S_F2 89.157 57.972 7505800 13562000 115590 15558000 13715000 17810000 9290700 16452000 18993000 12658000 13422000 6989300 12662000 698140 15765000 13045000 17974000 9955700 16682000 18700000 12518000 13120000 15 15 11 15 15 15 15 15 15 15 15 4659400 7925400 56503 9303500 11102000 15000000 7085300 9211300 10687000 7300200 7507400 4338600 7400400 415350 9478900 10546000 14799000 7508500 9600300 10602000 7208500 7340500 7 7 4 7 7 7 7 7 7 7 7 2846400 5636500 59088 6254900 2613300 2810200 2205400 7240900 8306400 5357300 5914200 2650700 5261800 282790 6285800 2498700 3174900 2447200 7082100 8098500 5309800 5779300 8 8 7 8 8 8 8 8 8 8 8 4621700000 3031300000 1590300000 18475 1147 16969 93742;93743;93744;93745;93746;93747;93748;93749;93750;93751;93752 113509;113510;113511;113512;113513;113514;113515;113516;113517;113518;113519;113520;113521;113522;113523 113520 1524;1525 15 TDMDNQIVVSDYAQMDR Oxidation (M) 2015.8565 0.85645517 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 1 0 By MS/MS By MS/MS 2.22 0.786 2 3 4 4 5 52.242 52.012 3 1.4753E-05 16222 20211116_3429_TMUAki_TMT10x_P_F2 89.374 76.237 13609000 22974000 136210 22526000 20561000 24636000 16786000 18314000 17439000 16026000 18346000 12671000 21435000 1185400 23043000 19617000 24825000 17245000 18871000 17744000 15746000 17669000 9 9 5 9 9 9 9 9 9 9 9 9677000 15795000 56028 15567000 16355000 21216000 13814000 13099000 12470000 11338000 12791000 9009500 14738000 805360 15981000 15613000 21082000 14103000 13675000 12756000 11146000 12329000 6 6 3 6 6 6 6 6 6 6 6 3931800 7178400 80185 6959200 4205800 3420000 2972500 5214600 4968700 4688300 5554400 3661300 6697400 380060 7062100 4004900 3742700 3141400 5195600 4988200 4600500 5340000 3 3 2 3 3 3 3 3 3 3 3 2660200000 1951400000 708830000 18476 1147 16969 93753;93754;93755;93756;93757;93758;93759;93760;93761 113524;113525;113526;113527;113528;113529;113530;113531;113532;113533;113534 113524 1524;1525 11 TDMDNQIVVSDYAQMDR Unmodified 1999.8615 0.86154055 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 By MS/MS By matching 3 0 2 1 1 59.212 58.882 3 0.0044796 19724 20211116_3430_TMUAki_TMT10x_P_F3 57.338 46.282 1954500 3228100 28033 3256700 2454300 4435200 2446800 2385100 2296200 2409300 2532600 1820000 3012300 195160 3338000 2354800 4399500 2477600 2529200 2350900 2352100 2435800 1 1 1 1 1 1 1 1 1 1 1 1954500 3228100 28033 3256700 2454300 4435200 2446800 2385100 2296200 2409300 2532600 1820000 3012300 195160 3338000 2354800 4399500 2477600 2529200 2350900 2352100 2435800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 330710000 133890000 196830000 18477 1147 16969 93762;93763 113535 113535 1 TDMIQALGGVEGILEHTLFK Oxidation (M) 2187.1246 0.12455517 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 1 0 By MS/MS 4.5 0.5 1 1 2 80.344 80.338 3 5.4255E-25 25958 20211116_3444_TMUAki_TMT10x_S_F5 175.33 156.5 2068800 3645500 0 2970400 2766300 2884300 3053300 3072600 2884000 2857500 3062700 1926200 3399100 181070 3076700 2659700 2947900 3076800 3108000 2947800 2799600 2949000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2068800 3645500 0 2970400 2766300 2884300 3053300 3072600 2884000 2857500 3062700 1926200 3399100 181070 3076700 2659700 2947900 3076800 3108000 2947800 2799600 2949000 1 1 0 1 1 1 1 1 1 1 1 1948800000 0 1948800000 18478 1997 16970 93764;93765 113536 113536 2550 1 TDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPASPVVHIR Unmodified 4037.7985 0.79852145 677 P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes yes 0 0 0 1 By MS/MS By MS/MS 4.25 0.829 1 1 2 3 1 31.852 31.767 6 1.304E-44 9802 20211116_3441_TMUAki_TMT10x_S_F3 167.63 165.87 1247200 2113700 13205 3836900 6225400 5454800 2298800 2449200 3523200 2244100 2410400 1161300 1978700 67728 3816700 5871000 5389700 2575000 2635800 3491200 2200100 2359600 6 6 3 6 6 6 6 6 6 6 6 947960 1529800 151.71 2810500 6082600 5260500 2177400 1870900 2658000 1663000 1715500 882620 1432300 32944 2813300 5733900 5131800 2427700 2067100 2649600 1632800 1684100 4 4 1 4 4 4 4 4 4 4 4 299250 583890 13053 1026400 142790 194320 121440 578340 865200 581030 694840 278730 546480 34784 1003400 137170 257920 147320 568710 841600 567360 675560 2 2 2 2 2 2 2 2 2 2 2 2311400000 2132900000 178460000 18479 677 16971 93766;93767;93768;93769 113537;113538;113539;113540;113541;113542 113541 6 TDPGTATNHQGLPAVDSEILEMPPEK Oxidation (M) 2762.3069 0.30688923 391 O94888 UBXN7 UBX domain-containing protein 7 yes yes 0 0 1 0 By MS/MS 3 0 1 1 57.451 57.219 4 1.097E-05 19056 20211116_3430_TMUAki_TMT10x_P_F3 70.091 55.782 2753300 4645400 47615 4584200 4073700 6635500 3915300 3777600 3776300 3612200 3868500 2563900 4334400 291130 4711700 3905000 6569100 3975400 3980100 3851100 3534700 3728900 2 2 2 2 2 2 2 2 2 2 2 2753300 4645400 47615 4584200 4073700 6635500 3915300 3777600 3776300 3612200 3868500 2563900 4334400 291130 4711700 3905000 6569100 3975400 3980100 3851100 3534700 3728900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 333110000 333110000 0 18480 391 16972 93770 113543;113544 113543 299 2 TDPSILGGMIVR Oxidation (M) 1273.67 0.67002202 1068 P48047 ATP5O ATP synthase subunit O, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 51.8 51.944 2 1.9718E-05 15423 20211116_3433_TMUAki_TMT10x_P_F5 105.94 79.552 9253500 14951000 46161 15610000 13821000 18328000 10540000 14668000 14443000 12129000 13210000 8615900 13954000 829090 15919000 13169000 18421000 10984000 15023000 14479000 11950000 12782000 4 4 2 4 4 4 4 4 4 4 4 6752800 10207000 19318 11158000 11377000 15809000 8350000 10438000 10276000 8572900 9453500 6287300 9527500 597550 11385000 10831000 15697000 8687700 10828000 10340000 8449600 9144900 3 3 1 3 3 3 3 3 3 3 3 2500600 4744500 26844 4451700 2443800 2519100 2190000 4230100 4167200 3555600 3757000 2328500 4426100 231540 4533200 2338500 2724000 2295900 4194300 4138400 3500400 3636900 1 1 1 1 1 1 1 1 1 1 1 1207400000 886390000 321020000 18481 1068 16973 93771;93772;93773;93774 113545;113546;113547;113548;113549 113546 1390 5 TDPSILGGMIVR Unmodified 1257.6751 0.67510739 1068 P48047 ATP5O ATP synthase subunit O, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 63.299 63.863 2 7.6648E-09 20973 20211116_3435_TMUAki_TMT10x_P_F7 150.66 109.24 17086000 29354000 0 30726000 19469000 19205000 18605000 13764000 12812000 15359000 20486000 15907000 27395000 1268900 31077000 18634000 20153000 18737000 14316000 13560000 14935000 19524000 2 2 0 2 2 2 2 2 2 2 2 7416700 12589000 0 12818000 8432400 10906000 9098300 4646500 4051400 5577400 8030100 6904600 11748000 497180 13032000 8093500 11087000 9037700 5068000 4483600 5408800 7623100 1 1 0 1 1 1 1 1 1 1 1 9669400 16765000 0 17908000 11036000 8299800 9506300 9117100 8760700 9781500 12456000 9002800 15648000 771700 18045000 10541000 9066300 9699500 9248300 9076200 9525800 11901000 1 1 0 1 1 1 1 1 1 1 1 1574900000 815500000 759410000 18482 1068 16973 93775;93776;93777 113550;113551;113552 113551 3 TDPTTLTDEEINR Unmodified 1503.7053 0.70528113 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 43.622 43.472 2 2.3516E-45 12978 20211116_3429_TMUAki_TMT10x_P_F2 296.14 262.95 2058100 3114900 511.07 5540600 8319900 5575500 2835100 3780400 5085800 2569700 4142800 1916200 2915600 239400 5481500 7838400 5637500 3232200 3898000 5042000 2559600 4025600 3 3 1 3 3 3 3 3 3 3 3 1414700 2130400 0 3851900 7880000 5222600 2469800 2550800 3482700 1752800 2754200 1317000 1994300 188430 3828400 7418500 5175800 2819500 2704500 3472900 1744700 2679400 2 2 0 2 2 2 2 2 2 2 2 643450 984520 511.07 1688700 439920 352950 365210 1229600 1603100 816910 1388600 599120 921290 50972 1653000 419970 461650 412670 1193600 1569100 814840 1346200 1 1 1 1 1 1 1 1 1 1 1 392070000 305990000 86085000 18483 629 16974 93778;93779;93780;93781 113553;113554;113555 113554 3 TDPVPEEGEDVAATISATETLSEEEQEELRR Unmodified 3429.5907 0.59071146 1243 P55327-4;P55327-2;P55327;P55327-5;P55327-6;P55327-7;P55327-3;P55327-8 TPD52 Tumor protein D52 yes no 0 0 0 1 By MS/MS 1 0 1 1 77.173 77.12 4 2.5223E-10 27088 20211116_3439_TMUAki_TMT10x_S_F1 89.149 78.246 2898100 4404800 114500 4231100 3629400 3141500 2999100 2330000 2444100 2751300 3331100 2699200 4109500 357230 4312400 3471200 3249400 3057900 2422500 2542200 2669700 3185900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2898100 4404800 114500 4231100 3629400 3141500 2999100 2330000 2444100 2751300 3331100 2699200 4109500 357230 4312400 3471200 3249400 3057900 2422500 2542200 2669700 3185900 1 1 1 1 1 1 1 1 1 1 1 1550800000 0 1550800000 18484 1243 16975 93782 113556 113556 1 TDPVTGR Unmodified 744.37662 0.37661719 151;152 O14979;O14979-3;O14979-2 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like no no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 27.529 27.517 2 0.058973 5321 20211116_3431_TMUAki_TMT10x_P_F4 64.236 19.816 183130 262700 0 227960 181120 284210 169720 164790 157530 160360 195960 170470 245000 10829 235850 173100 283380 172370 173440 162150 156800 187850 1 1 0 1 1 1 1 1 1 1 1 183130 262700 0 227960 181120 284210 169720 164790 157530 160360 195960 170470 245000 10829 235850 173100 283380 172370 173440 162150 156800 187850 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4126500 4126500 0 18485 151;152 16976 93783;93784 113557 113557 1 TDQENNNNISSNPFAALFGSLADAK Acetyl (Protein N-term) 2679.2413 0.2412525 1680 Q14139;Q14139-2 UBE4A Ubiquitin conjugation factor E4 A yes no 1 0 0 0 By MS/MS By MS/MS 4.67 1.8 1 1 1 2 1 3 3 84.477 84.481 3 2.8956E-17 28510 20211116_3431_TMUAki_TMT10x_P_F4 67.239 51.817 2959500 5003900 26632 4535400 3462400 4314000 3680900 2661900 2865800 2862700 3725200 2755700 4667400 268530 4656600 3326400 4371400 3697100 2795800 2981700 2787600 3567000 9 9 4 9 9 9 9 9 9 9 9 1402900 2257500 6732.3 2025100 1233500 2354100 1549100 1198100 1330500 1377500 1697000 1306300 2105700 118940 2087200 1191000 2351900 1548100 1281900 1376100 1337900 1625700 3 3 2 3 3 3 3 3 3 3 3 1556600 2746300 19900 2510300 2228900 1959900 2131800 1463800 1535400 1485200 2028200 1449400 2561700 149600 2569400 2135400 2019500 2149000 1514000 1605600 1449700 1941200 6 6 2 6 6 6 6 6 6 6 6 233060000 163140000 69926000 18486 1680 16977 93785;93786;93787;93788;93789;93790 113558;113559;113560;113561;113562;113563;113564;113565;113566 113558 9 TDQFPLFLIIMGK Oxidation (M) 1537.8214 0.82143728 3196 Q9UNN5;Q9UNN5-2 FAF1 FAS-associated factor 1 yes no 0 0 1 0 By MS/MS 3 0 1 1 81.09 81.028 3 0.0075277 28692 20211116_3430_TMUAki_TMT10x_P_F3 58.831 44.412 1135500 1795800 25855 1812900 1140600 2473900 1480800 1221400 1227000 1374800 1835300 1057500 1675700 118310 1858100 1103800 2451300 1476400 1309600 1281000 1336400 1751600 1 1 1 1 1 1 1 1 1 1 1 1135500 1795800 25855 1812900 1140600 2473900 1480800 1221400 1227000 1374800 1835300 1057500 1675700 118310 1858100 1103800 2451300 1476400 1309600 1281000 1336400 1751600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 405260000 405260000 0 18487 3196 16978 93791 113567 113567 3187 1 TDQVIQSLIALVNDPQPEHPLR Unmodified 2482.318 0.31798668 1415 P68036;P68036-2;P68036-3;A0A1B0GUS4 UBE2L3 Ubiquitin-conjugating enzyme E2 L3 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 80.113 80.129 3 1.3962E-19 25854 20211116_3447_TMUAki_TMT10x_S_F8 145.58 136.16 2374700 3966900 67377 3921200 2698500 3445900 3036800 2298000 2244700 2195900 3217300 2211500 3701400 258190 3996400 2599700 3514000 3038200 2391400 2352700 2148800 3073500 2 2 1 2 2 2 2 2 2 2 2 1267200 1959900 67377 2252000 1164200 1961100 1312900 1184600 1005100 979140 1649400 1180400 1829900 166410 2272500 1124100 1998300 1314400 1237400 1058800 964750 1571200 1 1 1 1 1 1 1 1 1 1 1 1107500 2007000 0 1669200 1534300 1484900 1724000 1113500 1239600 1216700 1567900 1031200 1871500 91781 1723900 1475500 1515700 1723800 1153900 1293900 1184100 1502300 1 1 0 1 1 1 1 1 1 1 1 4489500000 2112200000 2377300000 18488 1415 16979 93792;93793;93794;93795 113568;113569 113569 2 TDRLWER Unmodified 974.49338 0.49337828 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 33.171 33.216 3 0.017696 7764 20211116_3431_TMUAki_TMT10x_P_F4 78.149 53.373 4243400 6679200 45116 6922400 9896000 6306000 5070900 3177200 3328800 3553500 5495700 3951300 6233300 462350 7035600 9369500 6391900 5342000 3399600 3539600 3455000 5234400 3 3 1 3 3 3 3 3 3 3 3 3897400 6099700 45116 6381600 9532600 6020800 4663100 2942000 3058500 3300800 5069300 3629100 5692700 433780 6485000 9019900 6086700 4934900 3157400 3253000 3209000 4828000 2 2 1 2 2 2 2 2 2 2 2 346060 579530 0 540770 363460 285220 407810 235210 270300 252680 426370 322220 540620 28571 550590 349600 305210 407080 242200 286540 246060 406470 1 1 0 1 1 1 1 1 1 1 1 209880000 189270000 20611000 18489 2334 16980 93796;93797;93798 113570;113571;113572 113570 3 TDRYTIHSQLEHLQSK Acetyl (Protein N-term) 1996.9967 0.99665254 2709 Q9BWJ5 SF3B5 Splicing factor 3B subunit 5 yes yes 1 0 0 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 40.37 40.44 3;4 1.3727E-35 9759 20211116_3444_TMUAki_TMT10x_S_F5 49.223 28.842 3975700 6170600 41950 8725400 5198700 5650700 3090000 6446800 6295900 5797400 6001900 3702100 5767400 378250 8674900 4933800 5964100 3343800 6495100 6254300 5688800 5798900 4 4 3 4 4 4 4 4 4 4 4 1220800 1838400 15824 2185800 2792700 3088400 1558200 1815400 1927400 1600500 1581100 1136800 1716700 130380 2218800 2647200 3062000 1656500 1903600 1932400 1572000 1536000 2 2 1 2 2 2 2 2 2 2 2 2754900 4332300 26126 6539600 2406000 2562200 1531800 4631500 4368500 4196900 4420800 2565300 4050700 247860 6456100 2286600 2902100 1687300 4591500 4321900 4116800 4262900 2 2 2 2 2 2 2 2 2 2 2 1322600000 653370000 669250000 18490 2709 16981 93799;93800;93801;93802 113573;113574;113575;113576 113576 4 TDSDIIAK Unmodified 861.44436 0.4443624 567 P09012 SNRPA U1 small nuclear ribonucleoprotein A yes yes 0 0 0 0 By MS/MS 3 0 1 1 38.151 38.177 2 0.012526 11211 20211116_3430_TMUAki_TMT10x_P_F3 79.906 23.896 299010 457050 5134.4 456730 490570 491940 376830 267970 252670 257320 372260 278450 426480 32258 466490 467830 493950 384340 283440 266730 251750 355410 1 1 1 1 1 1 1 1 1 1 1 299010 457050 5134.4 456730 490570 491940 376830 267970 252670 257320 372260 278450 426480 32258 466490 467830 493950 384340 283440 266730 251750 355410 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11192000 11192000 0 18491 567 16982 93803 113577 113577 1 TDTESELDLISR Unmodified 1377.6624 0.66235368 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 3 2 53.933 53.748 2 4.1353E-73 15537 20211116_3428_TMUAki_TMT10x_P_F1 336.37 229.77 8984000 14590000 63688 17970000 14463000 15608000 9467500 14265000 15451000 12299000 13968000 8364600 13627000 767930 18058000 13739000 16016000 10050000 14513000 15404000 12093000 13520000 4 4 1 4 4 4 4 4 4 4 4 4493000 7070400 63688 8870700 11677000 12631000 6955700 7106200 7720300 6059400 6905500 4183600 6604200 501190 8978600 11079000 12512000 7325900 7472600 7791800 5961100 6686700 2 2 1 2 2 2 2 2 2 2 2 4491000 7519500 0 9099200 2786900 2976800 2511800 7158800 7730500 6239400 7062400 4180900 7022400 266750 9079500 2660000 3504100 2723800 7040000 7612400 6131600 6833500 2 2 0 2 2 2 2 2 2 2 2 2371200000 1477700000 893500000 18492 629 16983 93804;93805;93806;93807;93808 113578;113579;113580;113581;113582 113578 5 TDTGEPMGR Unmodified 962.41274 0.4127447 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 By MS/MS 1 0 1 1 27.171 27.272 2 0.0061199 6838 20211116_3439_TMUAki_TMT10x_S_F1 76.679 57.042 16064 24932 0 26602 22984 10863 17768 6979.5 9596.3 11297 19281 14957 23270 0 26785 21907 11950 18043 7421.6 10464 10856 18300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16064 24932 0 26602 22984 10863 17768 6979.5 9596.3 11297 19281 14957 23270 0 26785 21907 11950 18043 7421.6 10464 10856 18300 1 1 0 1 1 1 1 1 1 1 1 437740 0 437740 18493 544 16984 93809 113583 113583 1 TDTLEDLFPTTK Unmodified 1379.682 0.68202649 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 4.75 0.924 1 4 4 3 6 6 73.71 73.69 2;3 1.8943E-16 24303 20211116_3433_TMUAki_TMT10x_P_F5 206.11 168.39 62976000 103390000 385040 118610000 67916000 87304000 65268000 60512000 63398000 64616000 79548000 58635000 96534000 5093800 119450000 65042000 90268000 66285000 62999000 65152000 62938000 76237000 17 17 6 17 17 17 17 17 17 17 17 33361000 52637000 106210 60758000 42256000 62229000 39290000 31387000 32598000 33652000 40401000 31060000 49146000 2678000 61431000 40428000 62611000 39802000 33537000 33732000 32773000 38732000 9 9 4 9 9 9 9 9 9 9 9 29615000 50756000 278830 57848000 25660000 25075000 25978000 29124000 30801000 30963000 39147000 27575000 47388000 2415900 58024000 24613000 27657000 26483000 29462000 31419000 30165000 37505000 8 8 2 8 8 8 8 8 8 8 8 6947300000 4299000000 2648300000 18494 648 16985 93810;93811;93812;93813;93814;93815;93816;93817;93818;93819;93820;93821 113584;113585;113586;113587;113588;113589;113590;113591;113592;113593;113594;113595;113596;113597;113598;113599;113600;113601;113602;113603 113591 20 TDTRAEIDLVCELAK Unmodified 1732.8665 0.86654957 2018 Q6UB35 MTHFD1L Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes yes 0 0 0 1 By MS/MS 3 0 1 1 67.235 66.772 3 1.8499E-06 24015 20211116_3441_TMUAki_TMT10x_S_F3 105.31 77.345 2820500 5221200 23687 5052400 3952900 2786000 3124400 3343200 2699500 2951800 3980700 2626400 4871300 271780 5132300 3770900 2990500 3199300 3359300 2810300 2899000 3800400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2820500 5221200 23687 5052400 3952900 2786000 3124400 3343200 2699500 2951800 3980700 2626400 4871300 271780 5132300 3770900 2990500 3199300 3359300 2810300 2899000 3800400 1 1 1 1 1 1 1 1 1 1 1 418440000 0 418440000 18495 2018 16986 93822 113604 113604 1 TDTVLILCR Unmodified 1089.5852 0.58522975 2855 Q9HB71;Q9HB71-3 CACYBP Calcyclin-binding protein yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 53.119 53.286 2 0.0023487 15120 20211116_3445_TMUAki_TMT10x_S_F6 86.332 46.686 16431000 26540000 141160 28538000 24583000 25198000 18169000 25619000 23038000 21800000 24331000 15300000 24772000 1558200 28922000 23415000 25886000 18916000 25912000 23270000 21448000 23431000 3 3 2 3 3 3 3 3 3 3 3 6558000 9909100 0 10854000 14916000 16366000 9647100 11374000 9466000 8930500 9998400 6105700 9249800 610960 11089000 14166000 16220000 10055000 11743000 9656800 8822600 9628600 1 1 0 1 1 1 1 1 1 1 1 9873400 16631000 141160 17683000 9666800 8832400 8522100 14245000 13572000 12869000 14332000 9194200 15522000 947240 17833000 9248700 9665400 8860500 14169000 13613000 12625000 13802000 2 2 2 2 2 2 2 2 2 2 2 966760000 211270000 755490000 18496 2855 16987 93823;93824;93825;93826 113605;113606;113607;113608 113608 4 TDVGAPFGPQGHR Unmodified 1337.6476 0.64764709 99 O00512 BCL9 B-cell CLL/lymphoma 9 protein yes yes 0 0 0 0 By MS/MS 5 0 1 1 33.176 33.354 3 0.0022844 6881 20211116_3444_TMUAki_TMT10x_S_F5 63.091 27.132 219270 335750 2895.1 329560 188710 164940 219950 186770 228380 185340 262020 204180 313270 20449 334180 181900 178670 221730 188750 233160 181080 251720 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 219270 335750 2895.1 329560 188710 164940 219950 186770 228380 185340 262020 204180 313270 20449 334180 181900 178670 221730 188750 233160 181080 251720 1 1 1 1 1 1 1 1 1 1 1 6674900 0 6674900 18497 99 16988 93827 113609 113609 1 TDYMVGSYGPR Oxidation (M) 1260.5445 0.54448715 1179 P52565 ARHGDIA Rho GDP-dissociation inhibitor 1 yes yes 0 0 1 0 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 37.197 37.294 2 0.00017786 9636 20211116_3431_TMUAki_TMT10x_P_F4 95.09 80.953 1400700 2050800 11564 3245300 2575300 1871500 1436200 1598600 2123100 1274000 2132600 1304100 1918100 128350 3205900 2440400 1985100 1537600 1629400 2130200 1257600 2057000 4 4 2 4 4 4 4 4 4 4 4 600340 912530 8049.3 1368400 1990500 1421200 829340 725710 845700 603400 839370 559040 853190 76744 1364600 1879900 1428900 902460 769290 859410 594350 809900 1 1 1 1 1 1 1 1 1 1 1 800350 1138300 3514.5 1876900 584820 450290 606840 872930 1277400 670570 1293200 745110 1064900 51601 1841300 560540 556220 635150 860140 1270800 663250 1247100 3 3 1 3 3 3 3 3 3 3 3 151720000 87216000 64505000 18498 1179 16989 93828;93829;93830;93831;93832 113610;113611;113612;113613 113610 1587 4 TDYNASVSVPDSSGPER Unmodified 1779.7911 0.79113602 1329;1330 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 0 By MS/MS By MS/MS 2.63 1.09 4 4 6 5 10 9 37.557 37.508 2;3 1.5656E-124 12887 20211116_3441_TMUAki_TMT10x_S_F3 388 362.76 13703000 20832000 69182 29510000 41453000 29089000 18471000 19642000 24877000 15757000 23984000 12757000 19471000 1285300 29486000 39158000 29448000 20136000 20331000 24996000 15550000 23164000 20 20 5 20 20 20 20 20 20 20 20 8880400 13549000 63513 18722000 37762000 25929000 13923000 13126000 15967000 10932000 15289000 8267600 12662000 1023500 18842000 35601000 25683000 15432000 13926000 16130000 10768000 14769000 9 9 2 9 9 9 9 9 9 9 9 4822200 7282600 5668.9 10788000 3691300 3159800 4547700 6516000 8910000 4825100 8695300 4489500 6808600 261780 10644000 3557700 3764900 4703200 6405000 8865900 4782100 8394700 11 11 3 11 11 11 11 11 11 11 11 8090000000 4996900000 3093100000 18499 1329;1330 16990 93833;93834;93835;93836;93837;93838;93839;93840;93841;93842;93843;93844;93845;93846;93847;93848;93849;93850;93851 113614;113615;113616;113617;113618;113619;113620;113621;113622;113623;113624;113625;113626;113627;113628;113629;113630;113631;113632;113633;113634;113635;113636 113630 23 TEAEIAHIALETLEGHQR Unmodified 2017.0229 0.022867292 373 O75955 FLOT1 Flotillin-1 yes yes 0 0 0 0 By MS/MS 2 0 1 1 69.41 69.11 4 1.7357E-23 23447 20211116_3429_TMUAki_TMT10x_P_F2 163.91 145.18 786390 1401200 46079 1478800 1026000 1600700 1039900 868520 846190 1063900 1258600 732550 1307700 111500 1504900 986920 1606700 1048100 925860 883960 1031000 1201400 1 1 1 1 1 1 1 1 1 1 1 786390 1401200 46079 1478800 1026000 1600700 1039900 868520 846190 1063900 1258600 732550 1307700 111500 1504900 986920 1606700 1048100 925860 883960 1031000 1201400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 529760000 529760000 0 18500 373 16991 93852 113637 113637 1 TEAPTWETHGNLMTER Oxidation (M) 1887.8421 0.84212573 1929 Q5SRE5 NUP188 Nucleoporin NUP188 homolog yes yes 0 0 1 0 By MS/MS 4 0 1 1 35.515 35.54 3 0.020885 8634 20211116_3431_TMUAki_TMT10x_P_F4 42.5 31.395 373160 527510 8948.4 681600 881690 704200 440350 388230 428240 339950 449670 347510 492790 46399 684800 834850 708890 469370 409230 436950 334000 433110 1 1 1 1 1 1 1 1 1 1 1 373160 527510 8948.4 681600 881690 704200 440350 388230 428240 339950 449670 347510 492790 46399 684800 834850 708890 469370 409230 436950 334000 433110 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 47514000 47514000 0 18501 1929 16992 93853 113638 113638 2521 1 TECNHYNNIMALYLK Oxidation (M) 1898.8655 0.86550371 1847 Q16531;Q16531-2 DDB1 DNA damage-binding protein 1 yes no 0 0 1 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 50.539 50.82 3 9.5453E-10 15599 20211116_3435_TMUAki_TMT10x_P_F7 128.76 111.68 9222400 17714000 145620 16597000 15227000 21111000 11519000 17348000 15606000 14210000 14299000 8588000 16525000 984420 17078000 14516000 21143000 12004000 17734000 15651000 14007000 13834000 5 5 5 5 5 5 5 5 5 5 5 5643500 10250000 103530 9963400 11597000 17702000 9067400 10513000 9367800 8357600 8308900 5255400 9562900 647760 10300000 11062000 17395000 9339000 10987000 9479400 8251300 8048100 3 3 3 3 3 3 3 3 3 3 3 3578900 7464900 42090 6633300 3630200 3408300 2451200 6834900 6238000 5852000 5990000 3332600 6962400 336660 6777500 3453700 3748100 2665300 6746900 6171600 5755900 5786000 2 2 2 2 2 2 2 2 2 2 2 2355600000 1319900000 1035700000 18502 1847 16993 93854;93855;93856;93857 113639;113640;113641;113642;113643 113640 2459 5 TECNHYNNIMALYLK Unmodified 1882.8706 0.87058909 1847 Q16531;Q16531-2 DDB1 DNA damage-binding protein 1 yes no 0 0 0 0 By MS/MS 8 0 1 1 60.677 60.865 3 4.9029E-06 18513 20211116_3436_TMUAki_TMT10x_P_F8 101.36 83.44 8548300 14612000 183020 14794000 11989000 16969000 11474000 7490300 6547000 7589800 9649600 7960300 13635000 871170 15112000 11490000 16939000 11513000 8096900 6986100 7408500 9212600 2 2 1 2 2 2 2 2 2 2 2 8548300 14612000 183020 14794000 11989000 16969000 11474000 7490300 6547000 7589800 9649600 7960300 13635000 871170 15112000 11490000 16939000 11513000 8096900 6986100 7408500 9212600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 521960000 521960000 0 18503 1847 16993 93858 113644;113645 113644 2 TECYGYALGDATR Unmodified 1475.6351 0.63509307 1197 P53041 PPP5C Serine/threonine-protein phosphatase 5 yes yes 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 44.251 44.318 2 2.6997E-20 13644 20211116_3430_TMUAki_TMT10x_P_F3 198.81 145.13 1219200 1796800 19976 2881500 4407900 3829700 2242100 1896400 2002000 1431200 2087200 1135300 1680700 164360 2877200 4173300 3799500 2380100 2011800 2050200 1417000 2010900 2 2 2 2 2 2 2 2 2 2 2 1219200 1796800 19976 2881500 4407900 3829700 2242100 1896400 2002000 1431200 2087200 1135300 1680700 164360 2877200 4173300 3799500 2380100 2011800 2050200 1417000 2010900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 382980000 382980000 0 18504 1197 16994 93859;93860 113646;113647 113646 2 TEDPDLPAFYFDPLINPISHR Unmodified 2456.2012 0.20122559 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 By MS/MS By MS/MS 4.22 1.31 1 2 2 2 2 5 4 79.072 79.046 3 2.5003E-26 25722 20211116_3445_TMUAki_TMT10x_S_F6 163.79 155.08 54750000 83222000 903510 88111000 67608000 78569000 75078000 45163000 37073000 47795000 66289000 50984000 77673000 4968800 89400000 65061000 79878000 74588000 47683000 40415000 46570000 63042000 10 10 7 10 10 10 10 10 10 10 10 29705000 43301000 556010 48143000 33114000 52574000 39619000 26399000 21854000 26200000 36437000 27662000 40422000 2906000 48838000 31941000 52697000 39297000 28156000 23528000 25596000 34698000 6 6 4 6 6 6 6 6 6 6 6 25045000 39921000 347490 39968000 34494000 25995000 35459000 18763000 15218000 21595000 29852000 23322000 37251000 2062800 40562000 33120000 27181000 35291000 19527000 16887000 20974000 28344000 4 4 3 4 4 4 4 4 4 4 4 13731000000 8340400000 5390500000 18505 1997 16995 93861;93862;93863;93864;93865;93866;93867;93868;93869 113648;113649;113650;113651;113652;113653;113654;113655;113656;113657;113658 113658 11 TEDSGLQTQVIAAATQCALSTSQLVACTK Unmodified 3051.4853 0.4852643 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 80.03 80.048 3;4 3.4034E-13 26434 20211116_3436_TMUAki_TMT10x_P_F8 109.41 100.69 4713700 7574200 0 7571800 4487300 7854300 5363900 3839800 3745900 4063300 5174300 4388300 7067500 308490 7728800 4319500 7893800 5345000 4113300 3932300 3959200 4947200 3 3 0 3 3 3 3 3 3 3 3 4713700 7574200 0 7571800 4487300 7854300 5363900 3839800 3745900 4063300 5174300 4388300 7067500 308490 7728800 4319500 7893800 5345000 4113300 3932300 3959200 4947200 3 3 0 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 961300000 961300000 0 18506 3293 16996 93870;93871 113659;113660;113661 113661 3 TEDSIRDYEDGMEVDTTPTVAGQFEDADVDH Oxidation (M) 3472.4372 0.43724729 1216 P54105 CLNS1A Methylosome subunit pICln yes yes 0 0 1 1 By MS/MS By MS/MS 1.2 0.4 4 1 2 3 61.584 61.425 3;4 1.5183E-45 18707 20211116_3428_TMUAki_TMT10x_P_F1 189.64 179.4 16270000 31179000 160590 26753000 17288000 27359000 18966000 25402000 23735000 24471000 23679000 15149000 29077000 1212700 27614000 16621000 27790000 19298000 25898000 23936000 23938000 22844000 8 8 3 8 8 8 8 8 8 8 8 5781300 11718000 0 8977200 5735400 14366000 7840500 8467300 7862400 9096700 8059700 5382400 10924000 212160 9432400 5547400 14170000 7843600 8925500 8004700 8858300 7768800 3 3 0 3 3 3 3 3 3 3 3 10489000 19461000 160590 17776000 11552000 12992000 11125000 16935000 15873000 15375000 15619000 9766800 18153000 1000500 18182000 11074000 13619000 11454000 16973000 15931000 15080000 15075000 5 5 3 5 5 5 5 5 5 5 5 11521000000 5308300000 6212600000 18507 1216 16997 93872;93873;93874;93875;93876 113662;113663;113664;113665;113666;113667;113668;113669 113663 1633 8 TEDSIRDYEDGMEVDTTPTVAGQFEDADVDH Unmodified 3456.4423 0.44233267 1216 P54105 CLNS1A Methylosome subunit pICln yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 4 2 2 68.194 68.091 3;4 3.2323E-57 23390 20211116_3439_TMUAki_TMT10x_S_F1 208.96 203.7 12109000 20136000 332060 20633000 13453000 12898000 13029000 5585900 4784400 6347300 13156000 11277000 18791000 1302600 20898000 12907000 13453000 12983000 6071200 5525100 6167800 12432000 5 5 3 5 5 5 5 5 5 5 5 4102200 6251700 109770 6658100 3963800 6218400 4699600 2586400 2612700 2739100 4334800 3820300 5835000 427740 6757100 3825000 6280400 4664000 2817600 2810400 2668800 4128300 2 2 1 2 2 2 2 2 2 2 2 8007100 13884000 222290 13975000 9489400 6680000 8329100 2999500 2171700 3608300 8821000 7456900 12956000 874840 14141000 9082100 7172400 8318700 3253600 2714700 3498900 8303400 3 3 2 3 3 3 3 3 3 3 3 4690800000 2532700000 2158100000 18508 1216 16997 93877;93878;93879;93880 113670;113671;113672;113673;113674 113673 5 TEDSLMPEEEFLRR Oxidation (M) 1766.8145 0.814514 1810 Q15459;Q15459-2 SF3A1 Splicing factor 3A subunit 1 yes no 0 0 1 1 By MS/MS By MS/MS 1.75 0.829 4 2 2 2 6 50.3 50.109 3 1.0163E-06 14316 20211116_3428_TMUAki_TMT10x_P_F1 115.57 83.077 13874000 24696000 176400 25968000 17816000 20614000 15812000 21335000 20615000 19395000 20368000 12919000 23049000 1298900 26322000 17039000 21347000 16292000 21597000 20753000 19022000 19656000 7 7 5 7 7 7 7 7 7 7 7 5101900 9109000 66477 9783900 9030100 12370000 7420700 7430200 7315300 7437100 7612900 4750900 8502200 539950 9972200 8622100 12331000 7608000 7804000 7457200 7263200 7334700 2 2 2 2 2 2 2 2 2 2 2 8771800 15588000 109920 16184000 8785900 8244600 8390900 13904000 13300000 11958000 12755000 8167700 14547000 758950 16349000 8416400 9015900 8683900 13793000 13296000 11759000 12321000 5 5 3 5 5 5 5 5 5 5 5 2832800000 1379300000 1453400000 18509 1810 16998 93881;93882;93883;93884;93885;93886;93887;93888 113675;113676;113677;113678;113679;113680;113681 113676 2436 7 TEDSLMPEEEFLRR Unmodified 1750.8196 0.81959938 1810 Q15459;Q15459-2 SF3A1 Splicing factor 3A subunit 1 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 55.83 55.68 3 3.7342E-09 18403 20211116_3439_TMUAki_TMT10x_S_F1 126.63 86.053 12860000 21675000 0 22319000 17134000 22382000 15311000 18681000 17437000 17029000 17979000 11973000 20228000 987570 22725000 16374000 22714000 15692000 19130000 17666000 16699000 17327000 4 4 0 4 4 4 4 4 4 4 4 7042400 11734000 0 11955000 11364000 16580000 10016000 10561000 9461600 9422000 9523600 6556600 10950000 569220 12250000 10858000 16470000 10213000 11007000 9652000 9248900 9185100 2 2 0 2 2 2 2 2 2 2 2 5817900 9940600 0 10364000 5769700 5801700 5295200 8119900 7975800 7606500 8455800 5416500 9277200 418350 10475000 5516200 6243900 5479000 8123400 8013700 7450100 8142200 2 2 0 2 2 2 2 2 2 2 2 502380000 344250000 158130000 18510 1810 16998 93889;93890 113682;113683;113684;113685 113684 4 TEEALQLYNQIIK Unmodified 1561.8352 0.83517309 381 O76094 SRP72 Signal recognition particle subunit SRP72 yes yes 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 76.817 76.912 2 4.4247E-25 26971 20211116_3446_TMUAki_TMT10x_S_F7 222.28 191.59 10233000 17105000 75650 14443000 11364000 17334000 12413000 12987000 12300000 12955000 13470000 9527900 15950000 900110 14966000 10925000 17382000 12532000 13423000 12560000 12654000 12957000 2 2 1 2 2 2 2 2 2 2 2 5114100 8372200 0 6924300 5365300 10809000 6080000 6644200 6060200 6401600 6212000 4761500 7806700 392930 7224300 5160200 10679000 6129200 6958300 6171500 6262100 5987800 1 1 0 1 1 1 1 1 1 1 1 5118500 8732400 75650 7518900 5998400 6524100 6332800 6343100 6240000 6553200 7257600 4766400 8143700 507190 7741300 5764500 6703600 6403200 6464700 6388300 6391500 6969700 1 1 1 1 1 1 1 1 1 1 1 1027300000 504550000 522700000 18511 381 16999 93891;93892;93893 113686;113687;113688 113688 3 TEEGEIDYSAEEGENRR Unmodified 1982.8454 0.84535644 2310 Q8WVV9;Q8WVV9-5;Q8WVV9-4;Q8WVV9-3;Q8WVV9-2 HNRNPLL Heterogeneous nuclear ribonucleoprotein L-like yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 32.67 32.685 3 1.0597E-60 8988 20211116_3439_TMUAki_TMT10x_S_F1 290.27 246.26 751680 1249100 0 1563300 1830700 1392600 945880 798670 1114300 708960 1126000 699780 1166700 63773 1570100 1732200 1415900 1010900 839320 1126700 696100 1085800 2 2 0 2 2 2 2 2 2 2 2 471450 768910 0 928980 1577500 1207400 651440 519640 696400 461600 624930 438860 718080 41279 940570 1488500 1197400 710600 561300 703960 453210 605060 1 1 0 1 1 1 1 1 1 1 1 280230 480190 0 634310 253190 185200 294440 279030 417940 247360 501060 260920 448650 22494 629500 243780 218480 300330 278020 422730 242890 480780 1 1 0 1 1 1 1 1 1 1 1 134380000 82544000 51840000 18512 2310 17000 93894;93895 113689;113690 113690 2 TEEGPTLSYGR Unmodified 1208.5673 0.56733108 1026 P43243 MATR3 Matrin-3 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 36.411 36.252 2 2.9505E-16 7984 20211116_3440_TMUAki_TMT10x_S_F2 183.81 150.97 1567000 2654100 3777.7 3772800 4209700 2174300 1813600 1942200 2927000 1530400 2924500 1458900 2480700 158010 3745900 3975600 2308500 1999400 1974000 2928900 1511600 2821200 2 2 1 2 2 2 2 2 2 2 2 589380 1003500 3777.7 1371900 3318200 1402900 861360 780960 1114900 627700 1106400 548800 937750 90603 1374000 3120100 1413300 1010000 820830 1122900 619360 1067600 1 1 1 1 1 1 1 1 1 1 1 977580 1650600 0 2400900 891440 771450 952230 1161200 1812000 902650 1818100 910120 1543000 67404 2371900 855470 895170 989330 1153200 1806000 892230 1753700 1 1 0 1 1 1 1 1 1 1 1 244990000 173300000 71685000 18513 1026 17001 93896;93897;93898;93899 113691;113692;113693 113692 3 TEELEEESFPER Unmodified 1493.6522 0.65218292 3252 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 0 0 By MS/MS 1 0 2 2 45.727 45.727 2;3 2.8898E-15 12302 20211116_3428_TMUAki_TMT10x_P_F1 192.38 166.44 2849400 4545200 20737 7498400 12463000 10832000 5780700 5738600 7400400 4509200 5746100 2652800 4252200 334660 7490900 11780000 10715000 6263200 6054900 7399100 4454500 5594300 3 3 1 3 3 3 3 3 3 3 3 2849400 4545200 20737 7498400 12463000 10832000 5780700 5738600 7400400 4509200 5746100 2652800 4252200 334660 7490900 11780000 10715000 6263200 6054900 7399100 4454500 5594300 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 333130000 333130000 0 18514 3252 17002 93900;93901 113694;113695;113696 113694 3 TEEQKTEVEETAGSVPAEELVEMDAEPQEAEPAK Oxidation (M) 3715.6782 0.67820584 1501 Q02952;Q02952-3;Q02952-2 AKAP12 A-kinase anchor protein 12 yes no 0 0 1 1 By MS/MS By MS/MS 1 0 3 2 1 62.462 62.37 4;5 2.0531E-39 19145 20211116_3428_TMUAki_TMT10x_P_F1 176.13 169.63 11529000 20444000 16500 19465000 15904000 29194000 16703000 16891000 18953000 18223000 17200000 10734000 19073000 987100 20072000 15268000 28865000 16971000 17835000 19121000 17743000 16646000 6 6 2 6 6 6 6 6 6 6 6 9811100 17116000 16188 16820000 14277000 26893000 14852000 13941000 15558000 14843000 14374000 9134800 15970000 845680 17331000 13702000 26484000 15057000 14854000 15755000 14459000 13903000 5 5 1 5 5 5 5 5 5 5 5 1717500 3328400 311.53 2645100 1627000 2301500 1851300 2950900 3395100 3380700 2825200 1599200 3103200 141420 2741500 1565700 2380400 1913900 2980400 3366200 3284000 2743000 1 1 1 1 1 1 1 1 1 1 1 3424900000 2661200000 763640000 18515 1501 17003 93902;93903;93904 113697;113698;113699;113700;113701;113702 113701 2036 6 TEEQKTEVEETAGSVPAEELVEMDAEPQEAEPAK Unmodified 3699.6833 0.68329122 1501 Q02952;Q02952-3;Q02952-2 AKAP12 A-kinase anchor protein 12 yes no 0 0 0 1 By matching By MS/MS 1 0 3 1 2 67.323 67.186 4;5 3.4304E-39 23082 20211116_3439_TMUAki_TMT10x_S_F1 174.46 166.84 3258900 5845600 0 5766700 3566200 2815700 3509600 2242500 1863400 2571800 3794500 3034000 5454300 236290 5844400 3415500 3037600 3512000 2318800 2036200 2498200 3600600 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3258900 5845600 0 5766700 3566200 2815700 3509600 2242500 1863400 2571800 3794500 3034000 5454300 236290 5844400 3415500 3037600 3512000 2318800 2036200 2498200 3600600 2 2 0 2 2 2 2 2 2 2 2 2208700000 902490000 1306200000 18516 1501 17003 93905;93906;93907 113703;113704 113704 2 TEERAELAESR Unmodified 1289.6212 0.62115757 526;527 P06753-2;P06753-3;P06753-6 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 25.482 25.376 3 2.5178E-08 6143 20211116_3429_TMUAki_TMT10x_P_F2 147.73 120.09 689620 1106600 9023.5 971990 808620 916360 755290 585580 746680 611780 843830 642170 1032100 67130 1000300 774540 929530 768650 612850 763440 596420 811010 3 3 2 3 3 3 3 3 3 3 3 365990 557070 9023.5 480070 459360 592600 378660 320840 414950 327250 424480 340840 519520 40060 496870 438970 590660 389430 340110 420890 319350 409180 2 2 2 2 2 2 2 2 2 2 2 323630 549560 0 491920 349260 323760 376630 264740 331730 284530 419360 301330 512580 27069 503400 335570 338870 379220 272740 342550 277070 401830 1 1 0 1 1 1 1 1 1 1 1 57276000 29135000 28141000 18517 526;527 17004 93908;93909;93910;93911 113705;113706;113707 113706 3 TEETATEMLTSELQTQAHVIK Oxidation (M) 2375.1526 0.15262042 1501 Q02952;Q02952-3;Q02952-2 AKAP12 A-kinase anchor protein 12 yes no 0 0 1 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 63.365 63.47 3 3.0194E-17 22587 20211116_3441_TMUAki_TMT10x_S_F3 133.94 124.16 793380 1444600 30618 1416100 1055300 2035200 1224500 1306800 1213200 1221700 1210600 738940 1347900 97980 1455900 1018000 2018800 1232900 1362900 1234600 1196700 1167900 1 1 1 1 1 1 1 1 1 1 1 793380 1444600 30618 1416100 1055300 2035200 1224500 1306800 1213200 1221700 1210600 738940 1347900 97980 1455900 1018000 2018800 1232900 1362900 1234600 1196700 1167900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 378150000 378150000 0 18518 1501 17005 93912;93913 113708;113709 113709 2037 2 TEFTVEVYETHAR Unmodified 1580.7471 0.74708636 2536 Q96PV6;Q96PV6-1 LENG8 Leukocyte receptor cluster member 8 yes no 0 0 0 0 By matching By MS/MS 3.5 0.5 1 1 1 1 44.607 44.73 3 0.00034072 12633 20211116_3442_TMUAki_TMT10x_S_F4 80.96 68.192 2095700 3595000 81498 3981100 1855200 1499700 1440000 2668700 2673800 2246400 3070400 1951900 3356000 246330 3997000 1773300 1707100 1520600 2641700 2680200 2211300 2949700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2095700 3595000 81498 3981100 1855200 1499700 1440000 2668700 2673800 2246400 3070400 1951900 3356000 246330 3997000 1773300 1707100 1520600 2641700 2680200 2211300 2949700 1 1 1 1 1 1 1 1 1 1 1 156850000 52999000 103860000 18519 2536 17006 93914;93915 113710 113710 1 TEFWLISAPGEK Acetyl (Protein N-term) 1418.7082 0.70818166 754 P21283 ATP6V1C1 V-type proton ATPase subunit C 1 yes yes 1 0 0 0 By MS/MS 3.5 0.5 1 1 2 81.19 81.163 2 0.00088748 29687 20211116_3441_TMUAki_TMT10x_S_F3 49.5 34.831 914050 1593100 0 1540500 1215600 941180 1179800 732650 690830 858960 1121500 850870 1486400 55597 1566300 1163000 991090 1183500 759210 739480 833710 1068500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 914050 1593100 0 1540500 1215600 941180 1179800 732650 690830 858960 1121500 850870 1486400 55597 1566300 1163000 991090 1183500 759210 739480 833710 1068500 1 1 0 1 1 1 1 1 1 1 1 283680000 0 283680000 18520 754 17007 93916;93917 113711 113711 1 TEGDEEAEEEQEENLEASGDYK Unmodified 2499.9885 0.98851102 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 3 1 2 49.907 49.732 3;4 3.1979E-76 13920 20211116_3428_TMUAki_TMT10x_P_F1 261.02 257.83 6487000 10063000 13204 21962000 14270000 11892000 7104900 11829000 16507000 8459400 13525000 6039900 9434700 628340 21414000 13502000 12735000 7872500 11929000 16276000 8400700 13139000 5 5 2 5 5 5 5 5 5 5 5 2323800 3407900 4681.8 7512700 12209000 9993600 5293700 4098200 5879900 2951200 4680600 2163600 3195300 317880 7411400 11531000 9895300 5749300 4429900 5913600 2929500 4552300 2 2 1 2 2 2 2 2 2 2 2 4163200 6655500 8522.3 14449000 2061900 1898600 1811200 7731100 10627000 5508200 8844000 3876300 6239400 310460 14002000 1970400 2839400 2123200 7499600 10362000 5471100 8586700 3 3 1 3 3 3 3 3 3 3 3 4144800000 2690100000 1454700000 18521 647 17008 93918;93919;93920 113712;113713;113714;113715;113716 113712 5 TEGLSVLSQAMAVIK Oxidation (M) 1561.8385 0.83854391 504 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 0 0 1 0 By MS/MS By MS/MS 7.6 0.49 2 3 3 2 71.888 71.96 2;3 3.3222E-07 22355 20211116_3447_TMUAki_TMT10x_S_F8 103.85 79.061 3081900 5575900 105920 4349900 3637800 7505700 4481200 5184000 5918200 5617600 4893300 2870400 5198400 362020 4571400 3515700 7399500 4545800 5400900 5921500 5468600 4752200 1 1 1 1 1 1 1 1 1 1 1 3081900 5575900 105920 4349900 3637800 7505700 4481200 5184000 5918200 5617600 4893300 2870400 5198400 362020 4571400 3515700 7399500 4545800 5400900 5921500 5468600 4752200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1599300000 914730000 684610000 18522 504 17009 93921;93922;93923;93924;93925 113717;113718;113719 113719 407 3 TEIIILATR Unmodified 1028.623 0.62299547 783 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 1.12 2 2 2 2 4 4 58.204 58.442 2 8.9326E-05 17596 20211116_3436_TMUAki_TMT10x_P_F8 103.87 78.045 75389000 128910000 0 121440000 85173000 107340000 80256000 77329000 72404000 81662000 96211000 70190000 120260000 5860700 124200000 81510000 109540000 81421000 80267000 74847000 79577000 92075000 7 7 0 7 7 7 7 7 7 7 7 33093000 54602000 0 52576000 47388000 68472000 39637000 34411000 31048000 35946000 42180000 30810000 50942000 2633500 54017000 45223000 68009000 40345000 36752000 32357000 35043000 40345000 3 3 0 3 3 3 3 3 3 3 3 42296000 74307000 0 68861000 37785000 38864000 40618000 42918000 41356000 45716000 54031000 39380000 69316000 3227100 70186000 36287000 41533000 41076000 43515000 42490000 44534000 51730000 4 4 0 4 4 4 4 4 4 4 4 9228500000 4546900000 4681500000 18523 783 17010 93926;93927;93928;93929;93930;93931;93932;93933 113720;113721;113722;113723;113724;113725;113726;113727 113723 8 TEILPPFFK Unmodified 1090.6063 0.60628277 345 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.75 2.77 1 2 1 1 3 76.379 76.392 2 0.00072765 26791 20211116_3439_TMUAki_TMT10x_S_F1 113.71 76.061 69147000 111070000 272980 102520000 72408000 83282000 83117000 64265000 58072000 69595000 79659000 64378000 103610000 5222900 104900000 69662000 85602000 82974000 66460000 60940000 67751000 76176000 6 6 2 6 6 6 6 6 6 6 6 13644000 21891000 54928 20357000 13457000 23818000 16076000 12940000 11202000 14320000 15645000 12704000 20421000 1133200 20928000 12969000 23806000 16019000 13747000 11767000 13929000 14954000 2 2 1 2 2 2 2 2 2 2 2 55502000 89182000 218060 82163000 58952000 59464000 67041000 51326000 46869000 55275000 64014000 51674000 83190000 4089700 83976000 56693000 61795000 66955000 52713000 49173000 53822000 61221000 4 4 1 4 4 4 4 4 4 4 4 3207100000 539000000 2668100000 18524 345 17011 93934;93935;93936;93937 113728;113729;113730;113731;113732;113733 113730 6 TEISFRPNDPK Unmodified 1302.6568 0.65681479 498 P05026;P05026-2 ATP1B1 Sodium/potassium-transporting ATPase subunit beta-1 yes no 0 0 0 1 By MS/MS 5 0 1 1 39.065 39.073 3 0.014517 10367 20211116_3433_TMUAki_TMT10x_P_F5 59.57 28.342 1776400 2380300 0 2940200 3932600 3126300 1773800 1827100 2334700 1502700 2484200 1653900 2223100 169280 2962700 3716000 3144200 1929400 1913600 2355900 1481000 2391800 1 1 0 1 1 1 1 1 1 1 1 1776400 2380300 0 2940200 3932600 3126300 1773800 1827100 2334700 1502700 2484200 1653900 2223100 169280 2962700 3716000 3144200 1929400 1913600 2355900 1481000 2391800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 197620000 197620000 0 18525 498 17012 93938 113734 113734 1 TELEETTAEAEEEIQALTAHRDEIQR Unmodified 3011.432 0.4319664 118 O14578;O14578-4;O14578-3 CIT Citron Rho-interacting kinase yes no 0 0 0 1 By MS/MS 1 0 1 1 76.25 76.187 4 6.4416E-31 26725 20211116_3439_TMUAki_TMT10x_S_F1 177.22 167.24 1648800 2664700 0 2798600 2027500 1599200 1787500 1440800 1413500 1663700 2101500 1535100 2487000 131030 2827600 1937300 1699600 1814100 1479500 1478800 1615700 2005900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1648800 2664700 0 2798600 2027500 1599200 1787500 1440800 1413500 1663700 2101500 1535100 2487000 131030 2827600 1937300 1699600 1814100 1479500 1478800 1615700 2005900 1 1 0 1 1 1 1 1 1 1 1 905090000 0 905090000 18526 118 17013 93939 113735 113735 1 TELFIAAEGIHTGQFVYCGK Unmodified 2240.0936 0.093589394 1384 P62917 RPL8 60S ribosomal protein L8 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 72.278 72.384 3 9.7424E-25 24575 20211116_3435_TMUAki_TMT10x_P_F7 171.78 158.65 38871000 74129000 485660 57604000 43009000 64829000 50907000 42406000 40166000 47805000 53024000 36195000 69109000 3577100 60041000 41457000 65094000 50891000 44409000 41788000 46466000 50752000 9 9 6 9 9 9 9 9 9 9 9 17067000 31220000 254370 25064000 18180000 38500000 20885000 17659000 16746000 20814000 22848000 15893000 29109000 1667700 26205000 17516000 37924000 20915000 19101000 17433000 20198000 21852000 4 4 4 4 4 4 4 4 4 4 4 21803000 42909000 231290 32540000 24828000 26330000 30021000 24747000 23420000 26991000 30176000 20302000 40000000 1909400 33835000 23941000 27170000 29976000 25308000 24354000 26268000 28900000 5 5 2 5 5 5 5 5 5 5 5 4665900000 2241100000 2424800000 18527 1384 17014 93940;93941;93942;93943 113736;113737;113738;113739;113740;113741;113742;113743;113744 113737 9 TELFIAAEGIHTGQFVYCGKK Unmodified 2368.1886 0.18855241 1384 P62917 RPL8 60S ribosomal protein L8 yes yes 0 0 0 1 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 65.786 65.607 4 2.3415E-14 20382 20211116_3428_TMUAki_TMT10x_P_F1 136.2 121.27 28686000 52987000 252500 41906000 36948000 59269000 36164000 34779000 29776000 34066000 36768000 26710000 49401000 2499800 43793000 35408000 58758000 36526000 36575000 30820000 33300000 35253000 5 5 4 5 5 5 5 5 5 5 5 23701000 43746000 155070 34800000 29985000 53694000 30955000 28135000 24177000 27889000 29851000 22067000 40786000 1968100 36416000 28770000 52960000 31138000 29889000 25094000 27248000 28621000 4 4 3 4 4 4 4 4 4 4 4 4984800 9241100 97429 7106100 6963100 5575100 5209600 6643100 5599700 6177400 6917100 4642100 8614900 531790 7377300 6638400 5798000 5388100 6686400 5726400 6052300 6631900 1 1 1 1 1 1 1 1 1 1 1 3375600000 2666700000 708940000 18528 1384 17015 93944;93945;93946 113745;113746;113747;113748;113749 113746 5 TELHGQLISVEK Unmodified 1352.73 0.72997974 2986 Q9NWH9;Q9NWH9-3 SLTM SAFB-like transcription modulator yes no 0 0 0 0 By matching By MS/MS 4.33 0.471 2 1 1 2 43.297 43.442 3 0.00086018 10906 20211116_3444_TMUAki_TMT10x_S_F5 77.527 60.953 4728900 7384100 83102 8853500 4443200 3982600 4444000 5315000 5089900 4651000 6431300 4403600 6895600 457650 8855400 4264900 4387600 4527700 5316800 5197400 4569800 6162500 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4728900 7384100 83102 8853500 4443200 3982600 4444000 5315000 5089900 4651000 6431300 4403600 6895600 457650 8855400 4264900 4387600 4527700 5316800 5197400 4569800 6162500 3 3 2 3 3 3 3 3 3 3 3 260650000 87969000 172680000 18529 2986 17016 93947;93948;93949 113750;113751;113752 113751 3 TELLPSRPHAPCPPAPR Unmodified 1894.9836 0.98358543 111 O14497;O14497-3;O14497-2 ARID1A AT-rich interactive domain-containing protein 1A yes no 0 0 0 1 By MS/MS By MS/MS 1 0 4 2 2 35.742 35.725 3;4 1.3407E-29 10202 20211116_3439_TMUAki_TMT10x_S_F1 193.3 166.87 582160 920250 11333 1229600 944730 787950 560790 827650 797730 698260 841610 542070 859850 56428 1226000 896400 830840 596240 835620 802740 687290 810510 3 3 1 3 3 3 3 3 3 3 3 229790 329560 0 464440 657020 506230 307440 298340 273720 249050 280600 213900 308020 17743 464900 620720 508460 329080 312350 280180 245260 270470 1 1 0 1 1 1 1 1 1 1 1 352370 590690 11333 765200 287710 281710 253350 529310 524020 449210 561000 328170 551830 38686 761070 275680 322380 267160 523270 522560 442020 540040 2 2 1 2 2 2 2 2 2 2 2 593530000 375230000 218300000 18530 111 17017 93950;93951;93952;93953 113753;113754;113755 113755 3 TELPQFVSYFQQR Unmodified 1641.8151 0.81510635 1688 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes yes 0 0 0 0 By MS/MS By MS/MS 3.75 3.31 4 1 3 5 3 75.28 75.234 2;3 5.3108E-28 24426 20211116_3436_TMUAki_TMT10x_P_F8 211.63 158.84 10555000 19281000 185690 15903000 12464000 20952000 13783000 12208000 14355000 13036000 14104000 9828500 17979000 985570 16538000 11990000 20836000 13929000 12878000 14570000 12698000 13613000 4 4 3 4 4 4 4 4 4 4 4 7062600 13724000 120790 10749000 8731500 17820000 9862800 9393800 11593000 10132000 10182000 6576200 12795000 632170 11281000 8402200 17529000 9998700 9998400 11668000 9865000 9865800 3 3 2 3 3 3 3 3 3 3 3 3492500 5557200 64902 5154200 3732800 3131200 3920000 2814300 2762600 2904300 3921700 3252300 5184000 353400 5256400 3587800 3307500 3930600 2880100 2902200 2832800 3747200 1 1 1 1 1 1 1 1 1 1 1 1743800000 1372000000 371860000 18531 1688 17018 93954;93955;93956;93957;93958;93959;93960;93961 113756;113757;113758;113759;113760;113761;113762;113763 113759 8 TELSQSDMFDQR Oxidation (M) 1471.6249 0.62492232 1360 P62495;P62495-2 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 0 0 1 0 By MS/MS 2 0 1 1 36.521 36.62 2 0.0024489 8797 20211116_3440_TMUAki_TMT10x_S_F2 78.556 61.326 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18532 1360 17019 93962 113764 113764 1825 1 TELTPAYF Unmodified 940.4542 0.45419881 573 P09417;P09417-2 QDPR Dihydropteridine reductase yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 70.116 69.918 2 0.0029768 24220 20211116_3430_TMUAki_TMT10x_P_F3 102.98 96.07 6726500 11111000 25724 10900000 8611600 9944500 8085500 8253700 7607500 7771900 8782100 6263100 10367000 595260 11120000 8244700 10152000 8214200 8462700 7801900 7610300 8435400 4 4 2 4 4 4 4 4 4 4 4 3659600 5786100 25724 5840500 4601100 6898500 4820600 4449400 4010200 4119800 4592700 3407600 5399200 340560 5970300 4418800 6907400 4853100 4637600 4135800 4037200 4412300 2 2 2 2 2 2 2 2 2 2 2 3066900 5324700 0 5059600 4010500 3046000 3264900 3804300 3597300 3652200 4189400 2855500 4967600 254700 5150200 3825900 3244300 3361000 3825100 3666100 3573200 4023100 2 2 0 2 2 2 2 2 2 2 2 1277900000 587930000 689990000 18533 573 17020 93963;93964;93965;93966 113765;113766;113767;113768 113765 4 TEMQDNTYPEILR Oxidation (M) 1624.7403 0.74028642 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 1 0 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 46.905 46.731 2 1.8951E-21 12921 20211116_3440_TMUAki_TMT10x_S_F2 166.65 125.11 1509500 2507400 14858 3243500 2636000 2954500 1643200 2632400 3158100 2213800 2512100 1405500 2342400 141430 3252600 2502600 3020400 1765600 2680200 3123700 2179300 2443300 2 2 1 2 2 2 2 2 2 2 2 828070 1355900 14858 1730800 2224500 2523900 1266900 1416600 1682700 1180700 1348900 771130 1266600 102060 1751100 2109700 2497400 1348000 1489100 1681800 1162800 1311600 1 1 1 1 1 1 1 1 1 1 1 681460 1151600 0 1512700 411510 430590 376350 1215800 1475400 1033100 1163200 634400 1075900 39377 1501500 392820 523050 417610 1191000 1441800 1016500 1131800 1 1 0 1 1 1 1 1 1 1 1 342830000 249480000 93352000 18534 196 17021 93967;93968;93969 113769;113770;113771 113770 144 3 TEMQDNTYPEILR Unmodified 1608.7454 0.7453718 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 0 0 By MS/MS 3 0 1 1 53.42 53.269 2 3.0441E-41 17382 20211116_3430_TMUAki_TMT10x_P_F3 248.6 206.21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18535 196 17021 93970 113772 113772 1 TEMQNMIELSR Oxidation (M) 1366.6221 0.62208554 2949 Q9NTZ6 RBM12 RNA-binding protein 12 yes yes 0 0 1 0 By MS/MS 3 0 1 1 40.086 40.139 2 0.0037104 11956 20211116_3430_TMUAki_TMT10x_P_F3 78.683 61.742 650710 1008500 0 1460900 1955400 1436800 1119800 545870 443930 422280 829320 605860 942720 70439 1458100 1853800 1445200 1158700 596260 494880 417520 788090 2 2 0 2 2 2 2 2 2 2 2 650710 1008500 0 1460900 1955400 1436800 1119800 545870 443930 422280 829320 605860 942720 70439 1458100 1853800 1445200 1158700 596260 494880 417520 788090 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15883000 15883000 0 18536 2949 17022 93971 113773;113774 113774 3041 2 TENLLGSYFPK Unmodified 1267.6449 0.64485312 1527 Q06323;Q06323-2;Q06323-3 PSME1 Proteasome activator complex subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 2 4 3 3 67.971 68.121 2;3 9.3213E-09 21521 20211116_3436_TMUAki_TMT10x_P_F8 157.97 105.19 23280000 39132000 44894 38216000 30217000 41256000 27966000 31151000 30010000 30463000 33744000 21675000 36511000 1981300 39097000 28914000 41614000 28548000 32162000 30573000 29781000 32436000 6 6 2 6 6 6 6 6 6 6 6 12481000 20468000 2715.3 20523000 17574000 28673000 16761000 16588000 15617000 16410000 17622000 11620000 19099000 1039500 21055000 16826000 28436000 17008000 17470000 16009000 16035000 16938000 3 3 1 3 3 3 3 3 3 3 3 10799000 18664000 42178 17693000 12644000 12583000 11205000 14563000 14393000 14053000 16121000 10055000 17412000 941770 18042000 12088000 13179000 11540000 14692000 14564000 13746000 15498000 3 3 1 3 3 3 3 3 3 3 3 2798200000 1111500000 1686700000 18537 1527 17023 93972;93973;93974;93975;93976;93977 113775;113776;113777;113778;113779;113780;113781 113777 7 TENNDHINLK Unmodified 1196.5786 0.57856447 1323 P61956;P61956-2 SUMO2 Small ubiquitin-related modifier 2 yes no 0 0 0 0 By MS/MS 4 0 1 1 32.499 32.527 3 0.0011439 7372 20211116_3431_TMUAki_TMT10x_P_F4 76.655 55.753 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18538 1323 17024 93978 113782 113782 1 TENSTSAPAAKPK Unmodified 1300.6623 0.6622941 534 P07305 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes yes 0 0 0 1 By MS/MS 5 0 1 1 29.573 29.506 3 1.4283E-09 6514 20211116_3433_TMUAki_TMT10x_P_F5 136.17 112.94 211350 343810 4781 236140 275040 366080 224540 161630 166590 178050 242770 196830 320410 22870 250450 262740 360320 228610 175140 174720 173210 231830 1 1 1 1 1 1 1 1 1 1 1 211350 343810 4781 236140 275040 366080 224540 161630 166590 178050 242770 196830 320410 22870 250450 262740 360320 228610 175140 174720 173210 231830 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13728000 13728000 0 18539 534 17025 93979 113783 113783 1 TEPTAQQNLALQLAEK Unmodified 1753.921 0.92102798 2588 Q99613;Q99613-2;B5ME19 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 0 0 0 0 By MS/MS By MS/MS 5 0.866 3 2 3 5 3 60.267 60.342 2;3 7.1277E-104 18092 20211116_3445_TMUAki_TMT10x_S_F6 331.48 295.05 70771000 119970000 846140 113790000 93572000 112850000 82553000 82992000 80187000 76789000 95105000 65901000 111920000 6855100 116510000 89487000 114350000 84240000 85701000 82209000 75252000 91283000 10 10 8 10 10 10 10 10 10 10 10 39404000 62073000 353060 59713000 56970000 81141000 49810000 45327000 45271000 41483000 51953000 36692000 57912000 3840900 61404000 54467000 80534000 50758000 47778000 46491000 40673000 49910000 6 6 5 6 6 6 6 6 6 6 6 31367000 57900000 493080 54077000 36601000 31706000 32742000 37665000 34916000 35306000 43153000 29209000 54012000 3014200 55103000 35020000 33814000 33481000 37923000 35718000 34579000 41373000 4 4 3 4 4 4 4 4 4 4 4 7591900000 5812700000 1779200000 18540 2588 17026 93980;93981;93982;93983;93984;93985;93986;93987 113784;113785;113786;113787;113788;113789;113790;113791;113792;113793;113794 113794 11 TEQAISFAK Acetyl (Protein N-term) 1035.5237 0.52367535 639 P12236 SLC25A6 ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed yes yes 1 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 57.737 57.573 2 2.1075E-05 17946 20211116_3442_TMUAki_TMT10x_S_F4 87.616 72.177 19990000 30777000 26311 37342000 29949000 31898000 21074000 25505000 27749000 22503000 27723000 18611000 28743000 1574300 37550000 28479000 32687000 22047000 26165000 27937000 22101000 26744000 5 5 1 5 5 5 5 5 5 5 5 11689000 17319000 26311 21179000 23842000 26465000 15295000 14467000 15661000 13085000 16259000 10882000 16175000 1016600 21412000 22638000 26365000 15973000 15274000 15938000 12837000 15666000 3 3 1 3 3 3 3 3 3 3 3 8301300 13458000 0 16163000 6106600 5432800 5778900 11038000 12088000 9417300 11464000 7728600 12568000 557700 16137000 5840600 6322400 6074300 10891000 11999000 9264200 11078000 2 2 0 2 2 2 2 2 2 2 2 2855100000 1708600000 1146500000 18541 639 17027 93988;93989;93990;93991;93992 113795;113796;113797;113798;113799 113799 5 TEQCLVALLHK Unmodified 1310.7017 0.70165649 3135 Q9UIG0;Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B yes no 0 0 0 0 By MS/MS By matching 7.67 0.471 1 2 2 1 59.578 59.945 3 8.9258E-08 18147 20211116_3436_TMUAki_TMT10x_P_F8 117.23 94.354 3854600 5919300 156110 6618100 7353100 9940200 5200500 5449900 4404100 5080500 5647400 3590200 5525900 514060 6751800 7005900 9820600 5363000 5756700 4559300 4977100 5409400 1 1 1 1 1 1 1 1 1 1 1 3854600 5919300 156110 6618100 7353100 9940200 5200500 5449900 4404100 5080500 5647400 3590200 5525900 514060 6751800 7005900 9820600 5363000 5756700 4559300 4977100 5409400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1289200000 685370000 603860000 18542 3135 17028 93993;93994;93995 113800;113801 113801 2 TEQEEDEELLTESSK Unmodified 1765.7741 0.77414855 260 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 50.159 50.028 3 0.00051201 16097 20211116_3439_TMUAki_TMT10x_S_F1 74.338 62.423 2609500 3576300 0 6286100 7699000 5852000 3570800 5547000 6937800 3171900 4783400 2429300 3347200 246380 6215000 7275700 5981600 3942100 5584100 6834200 3195700 4681100 2 2 0 2 2 2 2 2 2 2 2 1722700 2164800 0 3642100 7098700 5303900 3145600 3530700 4279300 2003300 2806300 1603900 2025500 201870 3636100 6706200 5260900 3432500 3633600 4251600 2019500 2752800 1 1 0 1 1 1 1 1 1 1 1 886730 1411500 0 2644000 600270 548160 425180 2016300 2658500 1168600 1977100 825440 1321700 44511 2578900 569540 720700 509570 1950600 2582600 1176300 1928300 1 1 0 1 1 1 1 1 1 1 1 1108000000 616090000 491860000 18543 260 17029 93996;93997 113802;113803 113803 2 TEQGGAHFSVSSLAEGSVTSVGSVNPAENFR Unmodified 3120.4748 0.47483427 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 3 2 1 63.914 64.486 3;4 2.95E-57 21225 20211116_3435_TMUAki_TMT10x_P_F7 206.03 189.89 5328100 9568500 114810 9741400 6931500 7979000 6008000 6232500 5951700 6227500 7353800 4961800 8929000 561640 9899200 6629300 8197900 6140700 6424800 6107100 6082300 7050500 3 3 1 3 3 3 3 3 3 3 3 2948300 5460600 114810 5713200 3575000 5568500 3580400 3278400 3098200 3165100 3766200 2746000 5096200 356110 5808400 3434700 5630300 3616500 3445500 3196700 3095900 3612400 2 2 1 2 2 2 2 2 2 2 2 2379800 4107900 0 4028200 3356500 2410500 2427700 2954100 2853500 3062400 3587600 2215800 3832800 205530 4090800 3194600 2567700 2524200 2979300 2910400 2986500 3438100 1 1 0 1 1 1 1 1 1 1 1 2556300000 2014400000 541910000 18544 648 17030 93998;93999;94000 113804;113805;113806 113804 3 TEQMTLR Acetyl (Protein N-term);Oxidation (M) 935.43823 0.43823117 1405 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 1 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 28.543 28.584 2 0.027799 7384 20211116_3439_TMUAki_TMT10x_S_F1 70.912 64.458 203020 345640 2963.7 289930 230080 287420 211470 201860 223470 206080 281200 189040 322310 17321 299680 220160 291040 215850 209680 228860 201100 269470 2 2 1 2 2 2 2 2 2 2 2 102460 167390 2963.7 138930 124200 165440 94982 97337 107510 101880 145280 95419 156090 11561 144140 118530 165370 98260 102540 110170 99318 138970 1 1 1 1 1 1 1 1 1 1 1 100570 178250 0 151000 105880 121980 116490 104520 115950 104200 135920 93618 166230 5760.1 155540 101620 125660 117590 107140 118690 101780 130500 1 1 0 1 1 1 1 1 1 1 1 2408900 1052800 1356000 18545 1405 17031 94001;94002 113807;113808 113808 1889 2 TEREQFVEFR Unmodified 1339.6521 0.65206377 252 O43852;O43852-3;O43852-4;O43852-2;O43852-15 CALU Calumenin yes no 0 0 0 1 By MS/MS By MS/MS 2.17 1.07 2 2 1 1 3 3 36.919 36.849 3 1.5426E-08 8425 20211116_3440_TMUAki_TMT10x_S_F2 164.9 138.89 6464200 9994000 19595 13226000 10042000 8280100 6364300 6139400 6675200 5964600 8732400 6018300 9337500 521090 13190000 9531700 8692100 6657500 6344900 6850200 5832500 8360200 7 7 3 7 7 7 7 7 7 7 7 3214400 4931800 9016 6661800 7579700 6078400 3803700 3027500 3519500 3030200 4307500 2992600 4608400 292120 6665200 7170500 6159700 4046900 3232200 3620900 2959400 4130900 3 3 1 3 3 3 3 3 3 3 3 3249800 5062100 10579 6563800 2461900 2201700 2560600 3112000 3155700 2934300 4424900 3025700 4729100 228980 6524800 2361200 2532500 2610600 3112800 3229300 2873200 4229300 4 4 2 4 4 4 4 4 4 4 4 1016000000 703180000 312840000 18546 252 17032 94003;94004;94005;94006;94007;94008 113809;113810;113811;113812;113813;113814;113815 113813 7 TERPVNSAALSPNYDHVVLGGGQEAMDVTTTSTR Oxidation (M) 3588.7115 0.7114525 1623 Q13347 EIF3I Eukaryotic translation initiation factor 3 subunit I yes yes 0 0 1 1 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 46.406 46.565 4 1.056E-38 13416 20211116_3442_TMUAki_TMT10x_S_F4 160.56 154.48 3861500 8548500 49010 7495400 5668300 10976000 5446800 8215000 8170800 7657000 6445200 3595400 7972800 256380 7772900 5429400 10905000 5620900 8475000 8131900 7501200 6270900 8 8 3 8 8 8 8 8 8 8 8 2282200 5079500 34303 4201400 4149500 8870500 3789200 4835700 4717600 4574000 3410200 2124900 4736400 175240 4417900 3969400 8658000 3891100 5112400 4712300 4478000 3330100 4 4 2 4 4 4 4 4 4 4 4 1579300 3469000 14707 3294000 1518800 2105600 1657700 3379300 3453200 3083000 3035100 1470500 3236300 81143 3355000 1460000 2246900 1729800 3362600 3419600 3023200 2940800 4 4 1 4 4 4 4 4 4 4 4 2233300000 929220000 1304100000 18547 1623 17033 94009;94010;94011 113816;113817;113818;113819;113820;113821;113822;113823 113821 2174 8 TERPVNSAALSPNYDHVVLGGGQEAMDVTTTSTR Unmodified 3572.7165 0.71653788 1623 Q13347 EIF3I Eukaryotic translation initiation factor 3 subunit I yes yes 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 51.733 51.926 4 4.2655E-31 14330 20211116_3444_TMUAki_TMT10x_S_F5 155.55 148.45 2966400 5967400 47962 6161500 3864200 4567600 3757500 3749200 3550700 3378200 4309100 2762100 5568900 273170 6248200 3703400 4733100 3810500 3842100 3648200 3314600 4133400 3 3 2 3 3 3 3 3 3 3 3 1138200 2520200 47880 2580200 2177500 2796700 2077800 1251500 889600 1049100 1479900 1060100 2351900 153540 2631200 2088300 2801000 2076100 1344400 977960 1032900 1409400 1 1 1 1 1 1 1 1 1 1 1 1828200 3447200 82.184 3581300 1686700 1770800 1679600 2497700 2661100 2329100 2829200 1702000 3217100 119630 3617000 1615100 1932000 1734500 2497700 2670300 2281700 2724000 2 2 1 2 2 2 2 2 2 2 2 2404700000 1145200000 1259500000 18548 1623 17033 94012;94013 113824;113825;113826 113825 3 TESAVSQMQSVIELGR Oxidation (M) 1749.8567 0.85671317 1002 P41252 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 0 0 1 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 46.586 46.68 3 1.4796E-06 14632 20211116_3430_TMUAki_TMT10x_P_F3 101.53 86.837 3893400 6035000 111140 7060200 5964500 6189400 4549200 5311100 4677100 4338900 5484000 3625900 5635100 455370 7117100 5690200 6339300 4692400 5415200 4781200 4277700 5265200 3 3 3 3 3 3 3 3 3 3 3 1888300 2904900 44108 3360000 4205700 4543700 2740800 2653400 2365200 2073800 2688900 1758500 2712300 230110 3413300 3998500 4513300 2845100 2775900 2434100 2049200 2583800 2 2 2 2 2 2 2 2 2 2 2 2005100 3130100 67031 3700100 1758800 1645700 1808400 2657700 2311900 2265100 2795100 1867500 2922900 225260 3703800 1691700 1826000 1847300 2639300 2347100 2228400 2681400 1 1 1 1 1 1 1 1 1 1 1 146130000 76262000 69865000 18549 1002 17034 94014;94015 113827;113828;113829 113827 1294 3 TESPATAAETASEELDNR Unmodified 1890.8443 0.8442938 2946 Q9NTJ3;Q9NTJ3-2 SMC4 Structural maintenance of chromosomes protein 4 yes no 0 0 0 0 By MS/MS 1 0 1 1 50.702 50.702 3 1.6957E-30 14306 20211116_3428_TMUAki_TMT10x_P_F1 166.48 155.13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18550 2946 17035 94016 113830 113830 1 TESSGIETEPTVHHLPLSTEK Unmodified 2291.1281 0.12812022 3239 Q9Y2J2;Q9Y2J2-2;Q9Y2J2-4 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed yes no 0 0 0 0 By MS/MS 4 0 1 1 40.469 40.531 4 1.4723E-07 10606 20211116_3431_TMUAki_TMT10x_P_F4 94.856 84.517 1261100 1958400 32230 2596500 4328100 3674200 2115100 2317200 2477900 1667300 2202700 1174400 1829800 177550 2619900 4096300 3646100 2272400 2405000 2495200 1655200 2133400 1 1 1 1 1 1 1 1 1 1 1 1261100 1958400 32230 2596500 4328100 3674200 2115100 2317200 2477900 1667300 2202700 1174400 1829800 177550 2619900 4096300 3646100 2272400 2405000 2495200 1655200 2133400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 477030000 477030000 0 18551 3239 17036 94017 113831 113831 1 TETGQELECLQDHLDDLVVECR Unmodified 2658.1901 0.19014491 2375 Q92896;Q92896-2;Q92896-3 GLG1 Golgi apparatus protein 1 yes no 0 0 0 0 By matching By MS/MS 1 0 2 1 1 76.987 76.956 3 1.4597E-20 26973 20211116_3439_TMUAki_TMT10x_S_F1 158.89 150.29 9015200 12894000 125650 14510000 10462000 8615500 10651000 7330700 6678200 7347300 10729000 8394800 12038000 857690 14600000 10042000 9111600 10671000 7518700 7111500 7175000 10224000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9015200 12894000 125650 14510000 10462000 8615500 10651000 7330700 6678200 7347300 10729000 8394800 12038000 857690 14600000 10042000 9111600 10671000 7518700 7111500 7175000 10224000 2 2 1 2 2 2 2 2 2 2 2 2606700000 1649400000 957300000 18552 2375 17037 94018;94019 113832;113833 113832 2 TEVLSEDLLQIER Unmodified 1543.8094 0.80935227 1965 Q68EM7;Q68EM7-2;Q68EM7-6;Q68EM7-5;Q68EM7-4 ARHGAP17 Rho GTPase-activating protein 17 yes no 0 0 0 0 By MS/MS 1 0 1 1 71.14 70.991 3 0.060894 24583 20211116_3439_TMUAki_TMT10x_S_F1 41.838 21.509 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18553 1965 17038 94020 113834 113834 1 TEVNGFDPLFNAITGLNGSGK Unmodified 2150.0644 0.064397756 423 O95347;O95347-2 SMC2 Structural maintenance of chromosomes protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 80.007 80.002 3 2.0642E-08 25803 20211116_3447_TMUAki_TMT10x_S_F8 100.9 91.649 6007200 9505800 723670 10161000 6255400 10243000 7958400 6564800 6478400 7900700 8122600 5598700 8872400 1176000 10321000 6084600 10348000 7937700 6900300 6713700 7661200 7784700 2 2 2 2 2 2 2 2 2 2 2 3173100 4835600 431340 5399400 2845500 5858800 3400000 3366700 3206600 4237300 4175200 2957700 4514200 660480 5475300 2768400 5884200 3413700 3574900 3305000 4102500 3997700 1 1 1 1 1 1 1 1 1 1 1 2834100 4670200 292330 4761300 3410000 4384600 4558500 3198100 3271800 3663400 3947500 2641100 4358100 515480 4845300 3316200 4463300 4524000 3325400 3408800 3558700 3787100 1 1 1 1 1 1 1 1 1 1 1 936010000 593130000 342890000 18554 423 17039 94021;94022 113835;113836 113836 2 TEVNSGFFYK Unmodified 1190.5608 0.56078914 982 P40227;P40227-2;Q92526;Q92526-2 CCT6A;CCT6B T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2 yes no 0 0 0 0 By MS/MS By MS/MS 6.17 0.687 1 3 2 3 3 55.354 55.711 2;3 5.1226E-14 16154 20211116_3445_TMUAki_TMT10x_S_F6 226.09 164.42 91744000 148260000 594040 200080000 122450000 106120000 81829000 94089000 95488000 91002000 129250000 85424000 138530000 8156200 199050000 116400000 113630000 85549000 96178000 97743000 89005000 123640000 10 10 6 10 10 10 10 10 10 10 10 29849000 49037000 108550 63200000 76540000 70027000 43052000 31465000 31675000 29414000 41942000 27792000 45810000 3135600 63576000 72549000 70051000 45069000 33876000 33086000 28812000 40142000 4 4 2 4 4 4 4 4 4 4 4 61895000 99218000 485490 136880000 45910000 36090000 38777000 62624000 63813000 61588000 87312000 57631000 92722000 5020600 135470000 43849000 43579000 40481000 62301000 64657000 60193000 83499000 6 6 4 6 6 6 6 6 6 6 6 5155800000 2892600000 2263200000 18555 982 17040 94023;94024;94025;94026;94027;94028 113837;113838;113839;113840;113841;113842;113843;113844;113845;113846;113847;113848 113844 12 TEVNYTQLVDLHAR Unmodified 1657.8424 0.84238373 961 P36969;P36969-2 GPX4 Phospholipid hydroperoxide glutathione peroxidase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 51.807 51.99 3 3.2876E-09 15465 20211116_3433_TMUAki_TMT10x_P_F5 121.75 95.151 5351800 7988500 89304 9271600 9882000 11303000 6822700 6792900 6545700 5725200 7203300 4983700 7458900 590380 9398300 9403800 11288000 7071900 7102200 6694600 5635500 6928400 2 2 2 2 2 2 2 2 2 2 2 5351800 7988500 89304 9271600 9882000 11303000 6822700 6792900 6545700 5725200 7203300 4983700 7458900 590380 9398300 9403800 11288000 7071900 7102200 6694600 5635500 6928400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 704310000 704310000 0 18556 961 17041 94029;94030;94031 113849;113850;113851 113850 3 TEVSFTLNEDLANIHDIGGKPASVSAPR Unmodified 2937.4832 0.48321411 662 P13984 GTF2F2 General transcription factor IIF subunit 2 yes yes 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 64.339 64.598 4 9.9909E-13 21249 20211116_3435_TMUAki_TMT10x_P_F7 113.13 103.42 9446700 17913000 188840 15884000 12414000 19621000 12352000 15634000 15577000 14649000 14100000 8797200 16707000 1000700 16404000 11913000 19668000 12632000 16067000 15654000 14347000 13648000 3 3 3 3 3 3 3 3 3 3 3 7717300 14069000 85831 12318000 9796400 17404000 9979100 12182000 12287000 11331000 11026000 7186200 13122000 748930 12766000 9403100 17299000 10184000 12624000 12354000 11101000 10676000 2 2 2 2 2 2 2 2 2 2 2 1729300 3843100 103000 3566600 2617500 2216800 2372500 3452000 3290900 3317800 3074200 1610900 3585000 251810 3637900 2509900 2369400 2447700 3443400 3300000 3245900 2972200 1 1 1 1 1 1 1 1 1 1 1 3806300000 2159900000 1646400000 18557 662 17042 94032;94033;94034;94035 113852;113853;113854 113853 3 TEWETAAPAVAETPDIK Acetyl (Protein N-term) 1869.8996 0.89962384 1055 P46782 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes yes 1 0 0 0 By MS/MS By MS/MS 2.5 1.05 3 4 4 3 6 8 74.652 74.54 2;3 1.8715E-36 27039 20211116_3441_TMUAki_TMT10x_S_F3 147.71 129.84 48860000 85016000 170700 83704000 51243000 51461000 53125000 31748000 28717000 36349000 53920000 45491000 79324000 3768500 85002000 49161000 53971000 53033000 33412000 31177000 35311000 51235000 16 16 4 16 16 16 16 16 16 16 16 14892000 25744000 29591 24813000 16877000 24913000 20184000 10385000 9879300 11662000 16504000 13865000 24019000 1170900 25380000 16260000 25047000 19981000 11330000 10737000 11337000 15716000 5 5 1 5 5 5 5 5 5 5 5 33968000 59272000 141110 58891000 34366000 26548000 32941000 21363000 18837000 24687000 37416000 31626000 55306000 2597600 59622000 32901000 28924000 33051000 22082000 20440000 23973000 35519000 11 11 3 11 11 11 11 11 11 11 11 15129000000 8080900000 7048200000 18558 1055 17043 94036;94037;94038;94039;94040;94041;94042;94043;94044;94045;94046;94047;94048;94049 113855;113856;113857;113858;113859;113860;113861;113862;113863;113864;113865;113866;113867;113868;113869;113870;113871;113872 113869 18 TEWLDGK Unmodified 847.40758 0.40758296 1385 P62937;P62937-2;F5H284;Q9Y536;P0DN26;A0A0B4J2A2;A0A075B767;A0A075B759;P0DN37 PPIA;PPIAL4D;PPIAL4A;PPIAL4C;PPIAL4E Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase A-like 4D;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 50.772 50.928 2 0.0037503 14770 20211116_3431_TMUAki_TMT10x_P_F4 116.88 51.846 24064000 37883000 146220 44946000 77206000 44729000 37864000 23155000 22043000 21025000 35749000 22405000 35376000 2679600 45350000 73036000 45096000 39974000 24567000 23604000 20622000 34061000 3 3 2 3 3 3 3 3 3 3 3 17206000 26693000 125740 32079000 70328000 40164000 30157000 18966000 18619000 17046000 25701000 16020000 24927000 2091600 32466000 66418000 39941000 32333000 20296000 19697000 16727000 24574000 2 2 1 2 2 2 2 2 2 2 2 6858000 11191000 20482 12867000 6878300 4565900 7707000 4188600 3424600 3978600 10048000 6385700 10448000 587950 12884000 6617300 5155000 7641600 4271400 3906300 3894400 9487500 1 1 1 1 1 1 1 1 1 1 1 1003700000 713660000 290050000 18559 1385 17044 94050;94051;94052 113873;113874;113875 113873 3 TEYTVAVQTASK Unmodified 1296.6561 0.65614609 2458 Q96FC7;Q96FC7-2 PHYHIPL Phytanoyl-CoA hydroxylase-interacting protein-like yes no 0 0 0 0 By MS/MS 5 0 1 1 43.323 43.456 3 0.00038233 10898 20211116_3444_TMUAki_TMT10x_S_F5 81.494 57.507 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18560 2458 17045 94053 113876 113876 1 TFAPEEISAMVLTK Oxidation (M) 1551.7854 0.7854457 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 1 0 By MS/MS By MS/MS 5.6 0.97 3 6 7 4 9 11 70.418 70.467 2;3 1.125E-05 22891 20211116_3433_TMUAki_TMT10x_P_F5 104.22 93.464 97784000 171700000 1554300 140010000 118670000 209970000 130270000 177840000 183790000 178560000 155050000 91056000 160100000 8314100 146120000 114160000 208870000 133190000 182460000 183610000 174360000 150460000 21 21 15 21 21 21 21 21 21 21 21 56409000 94061000 794500 77194000 62561000 144700000 72055000 97251000 101600000 99773000 85871000 52528000 87706000 4183400 80951000 60270000 142180000 73507000 101350000 101510000 97339000 83324000 12 12 8 12 12 12 12 12 12 12 12 41375000 77639000 759820 62817000 56110000 65274000 58217000 80593000 82189000 78789000 69175000 38529000 72390000 4130600 65167000 53886000 66690000 59684000 81114000 82103000 77024000 67133000 9 9 7 9 9 9 9 9 9 9 9 18559000000 7291700000 11267000000 18561 614 17046 94054;94055;94056;94057;94058;94059;94060;94061;94062;94063;94064;94065;94066;94067;94068;94069;94070;94071;94072;94073 113877;113878;113879;113880;113881;113882;113883;113884;113885;113886;113887;113888;113889;113890;113891;113892;113893;113894;113895;113896;113897;113898 113880 614 22 TFAPEEISAMVLTK Unmodified 1535.7905 0.79053108 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 By MS/MS By MS/MS 6.47 1.15 4 4 3 4 7 8 74.933 74.95 2;3 3.2524E-43 27565 20211116_3446_TMUAki_TMT10x_S_F7 267.75 245.11 82723000 129000000 1074900 135140000 100960000 82412000 102260000 38722000 29586000 47409000 87835000 77030000 120400000 7994400 136640000 96892000 86226000 101410000 41835000 35346000 45945000 82929000 12 12 6 12 12 12 12 12 12 12 12 29156000 45915000 262150 47655000 29783000 38756000 35224000 15158000 12263000 18382000 31353000 27149000 42850000 2604400 48360000 28706000 39501000 34733000 16699000 14157000 17820000 29654000 6 6 3 6 6 6 6 6 6 6 6 53567000 83088000 812750 87483000 71174000 43656000 67036000 23564000 17324000 29028000 56483000 49881000 77546000 5390000 88281000 68186000 46725000 66675000 25135000 21189000 28125000 53275000 6 6 3 6 6 6 6 6 6 6 6 15477000000 4935600000 10542000000 18562 614 17046 94074;94075;94076;94077;94078;94079;94080;94081;94082;94083;94084;94085;94086;94087;94088 113899;113900;113901;113902;113903;113904;113905;113906;113907;113908;113909;113910;113911 113908 13 TFAVDETSVSGYIYHK Unmodified 1815.8679 0.86792978 2376 Q92900;Q92900-2 UPF1 Regulator of nonsense transcripts 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.33 1.11 2 1 2 1 4 2 60.886 61.186 3 2.2009E-07 19211 20211116_3433_TMUAki_TMT10x_P_F5 104.95 54.462 17976000 30958000 995280 31689000 24075000 33440000 23000000 24075000 23474000 24233000 24842000 16745000 28890000 2466700 32303000 23115000 33748000 23401000 24955000 23909000 23660000 23922000 5 5 4 5 5 5 5 5 5 5 5 10724000 18118000 557400 18462000 15490000 25240000 14703000 14295000 14056000 14037000 14463000 9989400 16908000 1438700 18911000 14864000 25049000 14935000 15079000 14343000 13720000 13939000 3 3 2 3 3 3 3 3 3 3 3 7252000 12840000 437880 13228000 8584900 8200100 8296500 9780000 9417800 10196000 10379000 6755600 11982000 1028000 13392000 8250900 8699400 8465300 9876400 9566000 9940600 9982800 2 2 2 2 2 2 2 2 2 2 2 3102400000 2060300000 1042100000 18563 2376 17047 94089;94090;94091;94092;94093;94094 113912;113913;113914;113915;113916;113917 113912 6 TFCGTPDYIAPEIIAYQPYGK Unmodified 2403.1457 0.14568454 704 P17252;P05771;P05129;P05771-2;P05129-2 PRKCA;PRKCB;PRKCG Protein kinase C alpha type;Protein kinase C beta type;Protein kinase C gamma type yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 78.101 78.124 3 0.011214 27506 20211116_3446_TMUAki_TMT10x_S_F7 43.164 27.91 1672900 3290100 12479 2730100 3115400 2807000 2556400 3541800 3096700 3213200 3128900 1557700 3067900 170530 2825800 2973900 2871400 2639000 3554100 3127800 3151700 3017300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1672900 3290100 12479 2730100 3115400 2807000 2556400 3541800 3096700 3213200 3128900 1557700 3067900 170530 2825800 2973900 2871400 2639000 3554100 3127800 3151700 3017300 1 1 1 1 1 1 1 1 1 1 1 1548300000 0 1548300000 18564 704 17048 94095;94096;94097 113918;113919 113919 2 TFCGTPEYLAPEVLEDNDYGR Unmodified 2445.0795 0.079455473 890 P31749;P31751;Q9Y243;P31749-2;Q9Y243-2 AKT1;AKT2;AKT3 RAC-alpha serine/threonine-protein kinase;RAC-beta serine/threonine-protein kinase;RAC-gamma serine/threonine-protein kinase yes no 0 0 0 0 By MS/MS By MS/MS 1.75 0.433 1 3 2 2 74.926 74.854 3 2.1679E-07 25691 20211116_3429_TMUAki_TMT10x_P_F2 88.755 79.823 7172900 11146000 97281 11948000 7062800 10671000 9005700 6577200 6395600 6662100 8454800 6679400 10403000 683810 12113000 6826800 10858000 8952500 6896400 6693700 6503100 8092300 3 3 3 3 3 3 3 3 3 3 3 4137800 6372900 75016 6332700 3775900 7726800 5093600 4290400 4086400 4088500 5097300 3853300 5946500 407900 6484100 3658100 7708300 5066600 4529500 4237100 4001400 4885900 2 2 2 2 2 2 2 2 2 2 2 3035100 4772800 22265 5615500 3286900 2944300 3912100 2286800 2309200 2573600 3357500 2826200 4456700 275910 5629300 3168700 3149500 3885900 2366800 2456600 2501700 3206400 1 1 1 1 1 1 1 1 1 1 1 1366500000 977360000 389170000 18565 890 17049 94098;94099;94100;94101 113920;113921;113922;113923 113920 4 TFCQLILDPIFK Unmodified 1493.7952 0.79522253 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 2.9 2.62 4 3 1 2 5 5 80.286 80.271 2;3 1.2028E-15 27849 20211116_3429_TMUAki_TMT10x_P_F2 196.88 142.48 60253000 89505000 104280 114910000 38323000 67959000 54371000 26041000 22415000 34198000 55549000 56098000 83613000 4265600 114730000 37122000 71187000 53322000 28837000 25378000 33063000 52560000 7 7 3 7 7 7 7 7 7 7 7 47023000 68806000 39576 88657000 31146000 57698000 39318000 20263000 17636000 26632000 42537000 43783000 64278000 3619000 88579000 30066000 59847000 38783000 22682000 19774000 25748000 40263000 5 5 2 5 5 5 5 5 5 5 5 13230000 20699000 64702 26257000 7177100 10261000 15053000 5777900 4778900 7565800 13012000 12315000 19335000 646690 26155000 7056000 11339000 14539000 6154300 5603400 7315500 12298000 2 2 1 2 2 2 2 2 2 2 2 9229200000 6251900000 2977300000 18566 653 17050 94102;94103;94104;94105;94106;94107;94108;94109;94110;94111 113924;113925;113926;113927;113928;113929;113930;113931 113927 8 TFDAQIVIIEHK Unmodified 1412.7664 0.76636524 681 P15170-3;P15170-2;P15170 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 0 0 0 0 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 58.879 58.964 2;3 2.6037E-07 18277 20211116_3433_TMUAki_TMT10x_P_F5 122.45 100.4 30285000 48385000 241350 55001000 41177000 51263000 36695000 28814000 27110000 30350000 37060000 28198000 45173000 2640600 55587000 39368000 51949000 37159000 30475000 28353000 29578000 35442000 5 5 4 5 5 5 5 5 5 5 5 19837000 31769000 140900 36628000 29512000 42782000 25929000 19105000 18458000 20582000 24669000 18470000 29662000 1663700 37115000 28200000 42671000 26257000 20664000 19325000 20041000 23605000 3 3 2 3 3 3 3 3 3 3 3 10448000 16615000 100450 18373000 11665000 8481400 10765000 9708900 8652200 9767400 12391000 9728600 15511000 976850 18472000 11168000 9278000 10901000 9811100 9027200 9537000 11837000 2 2 2 2 2 2 2 2 2 2 2 4163600000 2500900000 1662700000 18567 681 17051 94112;94113;94114;94115;94116 113932;113933;113934;113935;113936;113937 113933 6 TFDDMAQNFERRLVR Oxidation (M) 1912.9214 0.92137911 3408 yes no 0 0 1 2 By MS/MS 4.33 0.471 2 1 3 30.034 30.037 3 0.1108 6364 20211116_3431_TMUAki_TMT10x_P_F4 43.316 31.796 + 1626800 2564300 19119 2615200 10724000 4764600 2970300 2988500 4350000 1660400 3669800 1514800 2393000 280100 2696500 10089000 4681300 3461000 3088400 4340900 1676300 3561200 3 3 3 3 3 3 3 3 3 3 3 1626800 2564300 19119 2615200 10724000 4764600 2970300 2988500 4350000 1660400 3669800 1514800 2393000 280100 2696500 10089000 4681300 3461000 3088400 4340900 1676300 3561200 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 453240000 453240000 0 18568 3408 17052 94117;94118;94119 113938 113938 3327 1 TFDEIASGFR Unmodified 1141.5404 0.54038805 616 P11166 SLC2A1 Solute carrier family 2, facilitated glucose transporter member 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 60.122 60.184 2 0.0003781 19043 20211116_3442_TMUAki_TMT10x_S_F4 111.31 93.923 49867000 88552000 7422100 110240000 88112000 118190000 77054000 57878000 33848000 40945000 69762000 46486000 82709000 11587000 111050000 84658000 118560000 77400000 61383000 37599000 40686000 66185000 4 4 4 4 4 4 4 4 4 4 4 43316000 75774000 6987500 96336000 78377000 111430000 69843000 50210000 28127000 33731000 59895000 40384000 70782000 10594000 97052000 75360000 111210000 69999000 53647000 31567000 33623000 56795000 3 3 3 3 3 3 3 3 3 3 3 6550300 12778000 434600 13909000 9735400 6763200 7211400 7667500 5720300 7213400 9867600 6102300 11928000 992710 14002000 9297600 7350900 7400700 7736600 6031800 7063700 9390500 1 1 1 1 1 1 1 1 1 1 1 1220900000 843480000 377400000 18569 616 17053 94120;94121;94122 113939;113940;113941;113942 113942 4 TFDETVSTYVPLAQQVEDFHKR Unmodified 2609.2762 0.27618145 3175 Q9ULW0;Q9ULW0-2 TPX2 Targeting protein for Xklp2 yes no 0 0 0 1 By matching By MS/MS 6.33 0.471 2 1 1 2 70.166 70.211 4 0.057804 22211 20211116_3445_TMUAki_TMT10x_S_F6 34.614 19.022 29240000 48287000 54240 44598000 33225000 26706000 30256000 21146000 18935000 22318000 31632000 27223000 45043000 2218100 45490000 31766000 28185000 30494000 21816000 20209000 21749000 30122000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29240000 48287000 54240 44598000 33225000 26706000 30256000 21146000 18935000 22318000 31632000 27223000 45043000 2218100 45490000 31766000 28185000 30494000 21816000 20209000 21749000 30122000 2 2 1 2 2 2 2 2 2 2 2 2057700000 507010000 1550700000 18570 3175 17054 94123;94124;94125 113943;113944 113943 2 TFDHYCEYR Unmodified 1289.5135 0.51352137 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 33.712 33.737 3 0.00065097 7889 20211116_3431_TMUAki_TMT10x_P_F4 94.087 65.029 949820 1449200 8033.2 1702600 2317800 1848800 1168600 1069700 1075100 960070 1318200 884430 1353200 105390 1721200 2194000 1856900 1242500 1123700 1106400 942170 1264100 1 1 1 1 1 1 1 1 1 1 1 949820 1449200 8033.2 1702600 2317800 1848800 1168600 1069700 1075100 960070 1318200 884430 1353200 105390 1721200 2194000 1856900 1242500 1123700 1106400 942170 1264100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35691000 35691000 0 18571 1695 17055 94126 113945 113945 1 TFDHYCEYRR Unmodified 1445.6146 0.6146324 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 30.483 30.466 4 0.0001771 6888 20211116_3433_TMUAki_TMT10x_P_F5 109.42 61.415 149600 342310 667.72 297840 384630 335360 195050 179320 212360 149670 196660 139290 319250 16317 307550 364070 335820 208290 189310 214730 147400 190200 1 1 1 1 1 1 1 1 1 1 1 149600 342310 667.72 297840 384630 335360 195050 179320 212360 149670 196660 139290 319250 16317 307550 364070 335820 208290 189310 214730 147400 190200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21343000 21343000 0 18572 1695 17056 94127;94128 113946 113946 1 TFDPYIIIR Unmodified 1136.623 0.62299547 1652 Q13601;Q13601-2 KRR1 KRR1 small subunit processome component homolog yes no 0 0 0 0 By matching By MS/MS 8 0 2 1 1 68.332 68.318 2 0.022061 21098 20211116_3447_TMUAki_TMT10x_S_F8 61.582 39.434 5331100 8983600 12376 9058900 6364400 5249000 5855100 4191700 4302400 4562700 6088600 4963800 8382900 467990 9179300 6090500 5558500 5917700 4326300 4508300 4440900 5818100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5331100 8983600 12376 9058900 6364400 5249000 5855100 4191700 4302400 4562700 6088600 4963800 8382900 467990 9179300 6090500 5558500 5917700 4326300 4508300 4440900 5818100 1 1 1 1 1 1 1 1 1 1 1 421680000 198050000 223630000 18573 1652 17057 94129;94130 113947 113947 1 TFDYKIPYTTVLR Unmodified 1615.861 0.86099391 1550 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 63.777 63.459 3 7.9546E-12 21074 20211116_3429_TMUAki_TMT10x_P_F2 152.11 126.52 45463000 82388000 350160 76202000 51647000 74841000 55659000 57956000 54859000 56485000 62729000 42332000 76854000 3968000 78155000 49630000 75948000 56223000 59734000 56124000 55227000 60268000 6 6 3 6 6 6 6 6 6 6 6 19608000 33552000 318020 32921000 27280000 46805000 28483000 24951000 23151000 24440000 26336000 18258000 31305000 1884800 33837000 26198000 46334000 28664000 26456000 23899000 23891000 25307000 3 3 2 3 3 3 3 3 3 3 3 25855000 48837000 32137 43280000 24367000 28037000 27176000 33005000 31708000 32045000 36392000 24074000 45549000 2083200 44317000 23432000 29614000 27559000 33278000 32225000 31337000 34961000 3 3 1 3 3 3 3 3 3 3 3 6800500000 3564900000 3235500000 18574 1550 17058 94131;94132;94133;94134;94135 113948;113949;113950;113951;113952;113953;113954 113949 7 TFEGIDPK Unmodified 905.44945 0.44944778 1133 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 47.317 47.305 2 0.0012715 13669 20211116_3442_TMUAki_TMT10x_S_F4 124.98 67.424 21371000 34296000 176910 38680000 45647000 36841000 25543000 28673000 31666000 24285000 30572000 19899000 32018000 2247800 39123000 43272000 37461000 27150000 29434000 31908000 23899000 29525000 5 5 3 5 5 5 5 5 5 5 5 14668000 22893000 124370 25509000 39314000 31280000 18970000 19629000 21816000 16332000 20193000 13658000 21372000 1665900 25925000 37191000 31248000 20394000 20447000 22012000 16086000 19530000 3 3 2 3 3 3 3 3 3 3 3 6703000 11402000 52546 13171000 6333200 5561300 6572600 9043800 9850100 7953500 10379000 6241400 10646000 581900 13198000 6080600 6213200 6755800 8986700 9896100 7812700 9995500 2 2 1 2 2 2 2 2 2 2 2 810420000 464600000 345820000 18575 1133 17059 94136;94137;94138;94139 113955;113956;113957;113958;113959 113959 5 TFEGVDPQTTSMR Unmodified 1467.6664 0.6663932 884 P31150 GDI1 Rab GDP dissociation inhibitor alpha yes yes 0 0 0 0 By MS/MS 3 0 1 1 44.387 44.421 2 2.7541E-05 13706 20211116_3430_TMUAki_TMT10x_P_F3 90.697 49.045 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18576 884 17060 94140 113960 113960 1 TFEGVDPQTTSMR Oxidation (M) 1483.6613 0.66130782 884 P31150 GDI1 Rab GDP dissociation inhibitor alpha yes yes 0 0 1 0 By MS/MS 3.33 0.471 2 1 3 36.999 37.131 2;3 0.0014593 12466 20211116_3441_TMUAki_TMT10x_S_F3 78.655 53.732 33676 61527 0 109430 37821 21061 35900 44316 53874 27609 67465 31345 57590 1537.8 106930 36131 27428 37072 43384 54503 27652 64661 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33676 61527 0 109430 37821 21061 35900 44316 53874 27609 67465 31345 57590 1537.8 106930 36131 27428 37072 43384 54503 27652 64661 1 1 0 1 1 1 1 1 1 1 1 12924000 0 12924000 18577 884 17060 94141;94142;94143 113961;113962;113963 113962 1068 3 TFEHVTSEIGAEEAEEVGVEHLLR Unmodified 2680.298 0.2980391 1162 P51665 PSMD7 26S proteasome non-ATPase regulatory subunit 7 yes yes 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 67.505 67.322 4 4.0732E-97 23083 20211116_3439_TMUAki_TMT10x_S_F1 291.08 277.49 18030000 30307000 297970 25066000 19953000 34123000 20726000 24138000 21521000 22024000 25032000 16789000 28260000 1713900 26077000 19164000 33980000 21008000 24983000 21984000 21597000 24039000 8 8 5 8 8 8 8 8 8 8 8 13292000 21339000 127620 17827000 13349000 28459000 15280000 17275000 15510000 16198000 18069000 12377000 19898000 1136200 18594000 12850000 28085000 15406000 18096000 15859000 15864000 17352000 5 5 2 5 5 5 5 5 5 5 5 4738100 8967600 170360 7239200 6603900 5664200 5445700 6862900 6010900 5826400 6962300 4412900 8361300 577720 7483700 6313300 5894400 5601900 6886200 6124100 5733100 6686900 3 3 3 3 3 3 3 3 3 3 3 8227200000 5353900000 2873300000 18578 1162 17061 94144;94145;94146;94147 113964;113965;113966;113967;113968;113969;113970;113971 113969 8 TFEINPR Unmodified 875.45012 0.45011648 672 P14625;Q58FF3 HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein yes no 0 0 0 0 By MS/MS By MS/MS 4 0.756 2 3 2 3 4 39.244 39.288 2 0.019111 10385 20211116_3442_TMUAki_TMT10x_S_F4 88.942 51.922 11999000 17992000 113920 21045000 25313000 20725000 13356000 16724000 17216000 13602000 17412000 11173000 16800000 1275000 21248000 23976000 21043000 14292000 17113000 17352000 13413000 16791000 8 8 6 8 8 8 8 8 8 8 8 8107500 11740000 75477 13511000 21341000 17376000 9796800 10726000 11072000 8743600 11208000 7549400 10962000 927140 13716000 20177000 17313000 10580000 11182000 11212000 8621100 10808000 4 4 3 4 4 4 4 4 4 4 4 3891700 6251400 38447 7533800 3971800 3349200 3558800 5998100 6144500 4858900 6203700 3623700 5838000 347830 7532600 3799500 3729600 3711500 5930600 6140000 4792400 5982700 4 4 3 4 4 4 4 4 4 4 4 842800000 417760000 425040000 18579 672 17062 94148;94149;94150;94151;94152;94153;94154 113972;113973;113974;113975;113976 113976 5 TFEQRVEDVR Unmodified 1277.6364 0.6364137 13 Q9GZQ8;A6NCE7 MAP1LC3B;MAP1LC3B2 Microtubule-associated proteins 1A/1B light chain 3B;Microtubule-associated proteins 1A/1B light chain 3 beta 2 yes no 0 0 0 1 By MS/MS By MS/MS 2.2 1.17 2 1 1 1 3 2 33.774 33.688 3 4.0774E-06 8960 20211116_3429_TMUAki_TMT10x_P_F2 140.48 113.15 3572400 5686900 60954 7301900 9067600 6646100 4187000 6053600 6737300 4499800 6228000 3326700 5312600 429950 7325300 8575400 6797800 4581200 6138300 6724400 4458800 6023700 5 5 5 5 5 5 5 5 5 5 5 2018800 3107400 24762 3992800 7495500 5450000 2977900 3291200 3679900 2537300 3379000 1879900 2902800 267160 4032600 7075000 5413700 3278500 3432600 3702300 2509100 3269000 3 3 3 3 3 3 3 3 3 3 3 1553600 2579600 36192 3309100 1572100 1196100 1209100 2762400 3057400 1962500 2849000 1446800 2409700 162790 3292700 1500500 1384100 1302600 2705600 3022100 1949700 2754800 2 2 2 2 2 2 2 2 2 2 2 419530000 276310000 143210000 18580 13 17063 94155;94156;94157;94158;94159 113977;113978;113979;113980;113981 113978 5 TFESLVDFSK Unmodified 1171.5761 0.57610486 1866 Q16836;Q16836-3;Q16836-2 HADH Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS 5.33 0.471 2 1 3 72.736 72.788 2;3 2.7785E-05 22847 20211116_3434_TMUAki_TMT10x_P_F6 98.943 72.9 8493700 15806000 0 16409000 11172000 17673000 10542000 7843500 6173900 7998100 10693000 7908400 14751000 126510 16716000 10696000 17706000 10591000 8475400 6632400 7805000 10175000 2 2 0 2 2 2 2 2 2 2 2 8493700 15806000 0 16409000 11172000 17673000 10542000 7843500 6173900 7998100 10693000 7908400 14751000 126510 16716000 10696000 17706000 10591000 8475400 6632400 7805000 10175000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 815560000 815560000 0 18581 1866 17064 94160;94161;94162 113982;113983;113984 113984 3 TFEVCDLPVR Unmodified 1234.6016 0.6016081 936 P35606;P35606-2 COPB2 Coatomer subunit beta' yes no 0 0 0 0 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 57.034 56.989 2 4.5435E-07 17702 20211116_3442_TMUAki_TMT10x_S_F4 158.76 112.63 22068000 36397000 256480 38126000 31949000 41209000 24293000 28443000 25942000 27322000 29402000 20548000 33969000 2012800 38819000 30444000 41504000 25093000 29529000 26442000 26731000 28256000 4 4 1 4 4 4 4 4 4 4 4 16352000 25988000 256480 27551000 25843000 36303000 19440000 20835000 18940000 20605000 21457000 15226000 24255000 1559200 28127000 24623000 36096000 20038000 21958000 19380000 20134000 20621000 3 3 1 3 3 3 3 3 3 3 3 5716400 10409000 0 10576000 6105900 4906500 4853700 7607300 7001700 6717100 7945100 5322300 9713400 453630 10692000 5821500 5408800 5055300 7571600 7062500 6596900 7635100 1 1 0 1 1 1 1 1 1 1 1 1815100000 1219000000 596060000 18582 936 17065 94163;94164;94165;94166 113985;113986;113987;113988;113989 113988 5 TFEVTPIR Unmodified 961.52328 0.52328142 1732 Q14739 LBR Lamin-B receptor yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 46.398 46.545 2 0.0011808 13197 20211116_3433_TMUAki_TMT10x_P_F5 126.67 98.155 25285000 38691000 0 43601000 42855000 40590000 27329000 33493000 32899000 29111000 35122000 23541000 36121000 2084100 44088000 40684000 41376000 28705000 34280000 33304000 28612000 33812000 7 7 0 7 7 7 7 7 7 7 7 14241000 21461000 0 24614000 32208000 31418000 17992000 19615000 18578000 16037000 19819000 13259000 20037000 1330000 24989000 30519000 31322000 19012000 20432000 18918000 15810000 19081000 4 4 0 4 4 4 4 4 4 4 4 11044000 17230000 0 18987000 10647000 9171500 9337200 13877000 14321000 13074000 15303000 10282000 16084000 754070 19099000 10166000 10055000 9693900 13848000 14386000 12802000 14732000 3 3 0 3 3 3 3 3 3 3 3 2032500000 1150000000 882470000 18583 1732 17066 94167;94168;94169;94170;94171;94172 113990;113991;113992;113993;113994;113995;113996 113991 7 TFFEELAVEDK Unmodified 1326.6343 0.63434802 2241 Q8NE71;Q8NE71-2 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 4 4 4 4 74.471 74.399 2;3 1.8197E-11 25573 20211116_3429_TMUAki_TMT10x_P_F2 175.86 119.3 19307000 28790000 89287 29271000 16925000 28970000 19591000 13758000 14970000 16463000 20214000 17977000 26866000 1611300 29822000 16298000 29190000 19590000 14837000 15618000 15967000 19338000 5 5 3 5 5 5 5 5 5 5 5 19307000 28790000 89287 29271000 16925000 28970000 19591000 13758000 14970000 16463000 20214000 17977000 26866000 1611300 29822000 16298000 29190000 19590000 14837000 15618000 15967000 19338000 5 5 3 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1376100000 1376100000 0 18584 2241 17067 94173;94174;94175;94176;94177;94178;94179;94180 113997;113998;113999;114000;114001;114002;114003;114004;114005 114001 9 TFFEELAVEDKQAGEEEK Unmodified 2097.9742 0.97424534 2241 Q8NE71;Q8NE71-2 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 3 1 2 67.487 67.349 3;4 9.3595E-41 21014 20211116_3428_TMUAki_TMT10x_P_F1 210.06 180.29 25288000 46706000 703010 35179000 38017000 54497000 37732000 46998000 41224000 41490000 42669000 23551000 43538000 2927200 36991000 36487000 54158000 38396000 47998000 41837000 40748000 41116000 5 5 4 5 5 5 5 5 5 5 5 10795000 20729000 224210 13364000 15984000 34893000 19505000 23491000 20498000 20375000 20262000 10053000 19314000 1173800 14475000 15428000 33962000 19631000 24366000 20802000 20028000 19554000 2 2 1 2 2 2 2 2 2 2 2 14493000 25977000 478800 21815000 22033000 19604000 18227000 23507000 20726000 21115000 22407000 13498000 24224000 1753400 22516000 21059000 20196000 18765000 23632000 21035000 20720000 21563000 3 3 3 3 3 3 3 3 3 3 3 2008500000 1120900000 887610000 18585 2241 17068 94181;94182;94183 114006;114007;114008;114009;114010 114006 5 TFFGDDFIPNDILIGCEEEEQENGK Unmodified 2915.2807 0.28073406 1183 P52701;P52701-3;P52701-4 MSH6 DNA mismatch repair protein Msh6 yes no 0 0 0 0 By MS/MS 1 0 1 1 80.467 80.436 3 2.8287E-73 28403 20211116_3439_TMUAki_TMT10x_S_F1 249.2 237 1921900 3309600 34213 3128100 2473000 2186800 2519000 1821800 1615200 1983100 2561600 1789800 3087500 198950 3190000 2374500 2277700 2524800 1875500 1716300 1930100 2441700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1921900 3309600 34213 3128100 2473000 2186800 2519000 1821800 1615200 1983100 2561600 1789800 3087500 198950 3190000 2374500 2277700 2524800 1875500 1716300 1930100 2441700 1 1 1 1 1 1 1 1 1 1 1 563360000 0 563360000 18586 1183 17069 94184 114011 114011 1 TFFHQENVR Unmodified 1176.5676 0.56760585 2767 Q9H089 LSG1 Large subunit GTPase 1 homolog yes yes 0 0 0 0 By MS/MS 5 0 1 1 33.401 33.346 3 0.00070531 8053 20211116_3433_TMUAki_TMT10x_P_F5 92.201 73.529 997360 1539500 0 1437600 1833000 1658700 1211300 865150 1000700 875300 1281200 928630 1436200 92701 1477100 1741800 1658300 1254600 919980 1037300 854440 1227300 1 1 0 1 1 1 1 1 1 1 1 997360 1539500 0 1437600 1833000 1658700 1211300 865150 1000700 875300 1281200 928630 1436200 92701 1477100 1741800 1658300 1254600 919980 1037300 854440 1227300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 61208000 61208000 0 18587 2767 17070 94185 114012 114012 1 TFFSFPAVVAPFK Unmodified 1456.7755 0.77547336 1001 P41250 GARS Glycine--tRNA ligase yes yes 0 0 0 0 By MS/MS By MS/MS 6.2 0.748 2 4 4 6 4 80.411 80.424 2;3 3.7664E-25 26280 20211116_3445_TMUAki_TMT10x_S_F6 224.64 197.16 41260000 74763000 335880 60001000 75274000 97760000 61820000 87987000 75313000 69406000 74028000 38418000 69706000 3939900 62818000 71841000 97043000 63828000 89396000 75982000 68551000 71452000 11 11 6 11 11 11 11 11 11 11 11 21871000 38268000 248920 29860000 37017000 72888000 38026000 42502000 36349000 33956000 36942000 20365000 35677000 2060600 31700000 35521000 70916000 38467000 44491000 37073000 33516000 35618000 6 6 3 6 6 6 6 6 6 6 6 19389000 36495000 86957 30141000 38258000 24873000 23794000 45484000 38965000 35450000 37086000 18053000 34030000 1879300 31119000 36320000 26127000 25361000 44905000 38909000 35035000 35834000 5 5 3 5 5 5 5 5 5 5 5 13202000000 6044800000 7157300000 18588 1001 17071 94186;94187;94188;94189;94190;94191;94192;94193;94194;94195 114013;114014;114015;114016;114017;114018;114019;114020;114021;114022;114023;114024 114021 12 TFGAGEADCGLRPLFEK Unmodified 1866.8934 0.89343302 32 CON__P00735 yes yes 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 62.486 62.489 3 1.7032E-11 18594 20211116_3434_TMUAki_TMT10x_P_F6 138.08 122.14 + 14417000 26921000 198770 27066000 17735000 20876000 17062000 23514000 31707000 26587000 23604000 13425000 25121000 1383900 27509000 16998000 21708000 17795000 23866000 31328000 25840000 23021000 4 4 2 4 4 4 4 4 4 4 4 3655800 6273100 0 6437400 4792100 8122700 5474100 5721200 8020900 6830600 5712500 3403700 5854000 287410 6580800 4610000 8117000 5595800 5971400 7966500 6625400 5582100 1 1 0 1 1 1 1 1 1 1 1 10762000 20648000 198770 20629000 12943000 12753000 11588000 17793000 23686000 19757000 17892000 10022000 19267000 1096500 20929000 12388000 13591000 12199000 17895000 23361000 19215000 17439000 3 3 2 3 3 3 3 3 3 3 3 1765800000 1070200000 695630000 18589 32 17072 94196;94197 114025;114026;114027;114028 114025 4 TFGENYVQELLEK Unmodified 1568.7722 0.77223848 393 O94903 PROSC Proline synthase co-transcribed bacterial homolog protein yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 78.726 78.706 2 0.0014904 25204 20211116_3434_TMUAki_TMT10x_P_F6 73.881 48.664 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18590 393 17073 94198;94199 114029;114030 114029 2 TFGETHPFTK Unmodified 1163.5611 0.56112349 589 P09960;P09960-2;P09960-4;P09960-3 LTA4H Leukotriene A-4 hydrolase yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 38.958 39.164 3 0.0017578 11120 20211116_3435_TMUAki_TMT10x_P_F7 77.379 58.773 2410000 4116000 14812 4510300 6338500 4886900 3908600 3201500 3411900 2511100 3666600 2244000 3842100 268400 4579000 6017400 4917300 4076300 3319400 3501800 2480900 3529100 4 4 3 4 4 4 4 4 4 4 4 2056100 3543400 13023 3867700 5978100 4618700 3579200 2838900 3028400 2181700 3187500 1914500 3307500 237530 3934000 5672600 4618900 3738900 2956500 3110600 2157800 3070000 2 2 2 2 2 2 2 2 2 2 2 353840 572650 1789.5 642610 360400 268160 329400 362580 383540 329420 479040 329470 534600 30863 645020 344880 298400 337420 362890 391210 323090 459160 2 2 1 2 2 2 2 2 2 2 2 251800000 203490000 48307000 18591 589 17074 94200;94201;94202 114031;114032;114033;114034 114032 4 TFGGFASSSFGEQKPTGTFSSGGGSVASQGFGFSSPNK Unmodified 3690.6863 0.6862836 941 P35658;P35658-3;P35658-4;P35658-2;P35658-5 NUP214 Nuclear pore complex protein Nup214 yes no 0 0 0 1 By MS/MS 3 0 1 1 72.642 72.329 5 0.0022613 26245 20211116_3441_TMUAki_TMT10x_S_F3 43.566 38.022 1256000 2206100 0 1832100 1935100 1644300 1558500 1881600 1998600 1695500 1971300 1169300 2057100 99632 1892700 1845100 1692000 1614100 1895500 2013000 1663600 1902500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1256000 2206100 0 1832100 1935100 1644300 1558500 1881600 1998600 1695500 1971300 1169300 2057100 99632 1892700 1845100 1692000 1614100 1895500 2013000 1663600 1902500 1 1 0 1 1 1 1 1 1 1 1 236420000 0 236420000 18592 941 17075 94203 114035 114035 1 TFGHLLR Unmodified 842.47627 0.47627165 1609 Q13200;Q13200-3;Q13200-2 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.78 2.82 2 3 1 1 2 4 5 36.234 36.382 2;3 0.00051523 10727 20211116_3439_TMUAki_TMT10x_S_F1 144.9 104.33 2702200 4148300 19869 4306600 4088600 4812100 2784400 3194000 3431400 3096600 3619600 2515900 3871400 235460 4389900 3887000 4834700 2912500 3326200 3469200 3028300 3485800 10 10 4 10 10 10 10 10 10 10 10 1592600 2359800 8834.1 2452500 2983200 3208400 1699300 1776500 1984400 1700300 2069100 1482800 2202300 143540 2506700 2827700 3189700 1799600 1876200 2009300 1663800 1993300 5 5 2 5 5 5 5 5 5 5 5 1109600 1788500 11035 1854200 1105300 1603700 1085100 1417500 1447000 1396300 1550500 1033100 1669100 91918 1883200 1059300 1645000 1112900 1450000 1459900 1364600 1492500 5 5 2 5 5 5 5 5 5 5 5 722030000 483760000 238270000 18593 1609 17076 94204;94205;94206;94207;94208;94209;94210;94211;94212 114036;114037;114038;114039;114040;114041;114042;114043;114044;114045;114046 114041 11 TFGMAEEYHR Oxidation (M) 1255.5292 0.52917144 2184 Q8N1F7 NUP93 Nuclear pore complex protein Nup93 yes yes 0 0 1 0 By MS/MS By MS/MS 3.5 1.12 1 1 1 1 2 2 31.275 31.199 3 0.00040937 9475 20211116_3441_TMUAki_TMT10x_S_F3 94.692 75.912 873000 1506000 26808 1481900 1474900 1605100 1110100 973990 972520 876030 1257800 813020 1405100 101390 1515400 1406300 1613400 1140800 1019200 1005500 859620 1204600 4 4 2 4 4 4 4 4 4 4 4 652460 1094500 26808 1113500 1226100 1379300 844980 708760 697520 653230 953600 607710 1021400 87111 1138600 1167600 1373700 872460 752790 725140 640270 911970 2 2 2 2 2 2 2 2 2 2 2 220540 411470 0 368430 248820 225760 265130 265230 275010 222800 304250 205310 383780 14278 376760 238700 239680 268390 266410 280380 219350 292590 2 2 0 2 2 2 2 2 2 2 2 73110000 45765000 27344000 18594 2184 17077 94213;94214;94215;94216 114047;114048;114049;114050 114049 2622 4 TFGPPPSLSPGAFSYSSSSR Unmodified 2027.9589 0.95887005 995 P41219;P41219-2 PRPH Peripherin yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 2 4 3 3 65.954 65.604 2;3 2.9725E-77 22519 20211116_3430_TMUAki_TMT10x_P_F3 263.9 231.84 27240000 46973000 233000 42512000 34954000 39044000 31730000 30267000 29476000 30323000 35985000 25363000 43814000 2117000 43633000 33439000 39793000 32284000 31218000 30316000 29613000 34512000 12 12 8 12 12 12 12 12 12 12 12 9700800 16742000 105550 15092000 11847000 20254000 13146000 10952000 10109000 11295000 12819000 9033200 15616000 932700 15590000 11399000 20106000 13172000 11615000 10513000 11017000 12282000 4 4 4 4 4 4 4 4 4 4 4 17539000 30231000 127440 27420000 23107000 18791000 18584000 19315000 19367000 19028000 23166000 16330000 28198000 1184300 28042000 22040000 19687000 19111000 19603000 19803000 18596000 22230000 8 8 4 8 8 8 8 8 8 8 8 3197700000 1205300000 1992400000 18595 995 17078 94217;94218;94219;94220;94221;94222 114051;114052;114053;114054;114055;114056;114057;114058;114059;114060;114061;114062;114063 114055 13 TFHFNTVEEVHSR Unmodified 1601.7587 0.7586541 878 P30740 SERPINB1 Leukocyte elastase inhibitor yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 1 3 35.809 35.911 4 8.6102E-12 7799 20211116_3444_TMUAki_TMT10x_S_F5 150.11 128.24 1092800 1552400 66057 1661000 1478400 1553900 1255900 1010000 1011800 909030 1351200 1018000 1448900 154410 1685200 1415800 1577400 1278000 1051300 1052100 891970 1293000 3 3 2 3 3 3 3 3 3 3 3 644390 889720 51267 975660 1048100 1186500 802580 574590 564130 474830 767820 600370 830520 106860 992420 1001900 1181900 819550 612100 591570 467850 734390 1 1 1 1 1 1 1 1 1 1 1 448450 662650 14790 685360 430250 367470 453350 435400 447660 434200 583410 417640 618410 47552 692820 413810 395490 458470 439220 460480 424110 558590 2 2 1 2 2 2 2 2 2 2 2 312540000 231920000 80618000 18596 878 17079 94223;94224;94225;94226 114064;114065;114066 114066 3 TFHGAGLVVPVDKNDVGYR Unmodified 2043.0538 0.05377349 2993 Q9NWY4 C4orf27 UPF0609 protein C4orf27 yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 49.949 49.942 4 6.1445E-06 14148 20211116_3436_TMUAki_TMT10x_P_F8 87.411 73.154 8082100 14027000 67673 13650000 13417000 16659000 11613000 13180000 12521000 11235000 12672000 7525700 13087000 807850 13997000 12823000 16707000 11902000 13518000 12704000 11053000 12220000 3 3 3 3 3 3 3 3 3 3 3 5768800 9954900 60967 9624100 11009000 14608000 9694200 9581300 9420700 8238700 9412800 5371700 9287800 608480 9916100 10526000 14461000 9893500 9955100 9595600 8101700 9080400 2 2 2 2 2 2 2 2 2 2 2 2313300 4072200 6706 4025900 2408000 2050800 1918500 3598500 3100400 2996400 3259600 2154000 3799700 199370 4080800 2297000 2245900 2008200 3562600 3108000 2951300 3139500 1 1 1 1 1 1 1 1 1 1 1 559530000 253660000 305870000 18597 2993 17080 94227;94228 114067;114068;114069 114068 3 TFHIEEPR Unmodified 1027.5087 0.50869399 2395 Q969N2;Q969N2-2;Q969N2-4;Q969N2-5;Q969N2-3;Q969N2-6 PIGT GPI transamidase component PIG-T yes no 0 0 0 0 By matching By MS/MS 2.5 0.5 1 1 1 1 34.765 34.534 3 0.023146 10829 20211116_3441_TMUAki_TMT10x_S_F3 56.258 18.914 390140 651030 1809.7 638100 367250 301320 396900 434620 430840 385940 500210 363270 607430 33711 646840 352990 330730 402100 433710 439280 378940 480380 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 390140 651030 1809.7 638100 367250 301320 396900 434620 430840 385940 500210 363270 607430 33711 646840 352990 330730 402100 433710 439280 378940 480380 1 1 1 1 1 1 1 1 1 1 1 36877000 12096000 24781000 18598 2395 17081 94229;94230 114070 114070 1 TFHNPTYFSR Unmodified 1268.5938 0.5938206 2831 Q9H857;Q9H857-2;Q9H857-4;Q9H857-3 NT5DC2 5'-nucleotidase domain-containing protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 36.281 36.252 3 0.039702 8496 20211116_3428_TMUAki_TMT10x_P_F1 44.024 34.591 1150300 1844800 60178 2178500 1498500 1210800 1100900 987150 882880 887250 1443900 1071500 1722700 156330 2184400 1430500 1288100 1130800 1012000 927630 870650 1375500 2 2 2 2 2 2 2 2 2 2 2 343200 657690 41235 667250 765400 689580 423460 370380 388400 292520 412850 319860 613730 72797 680360 727800 693940 446330 390350 397530 288900 397500 1 1 1 1 1 1 1 1 1 1 1 807120 1187100 18943 1511200 733080 521190 677470 616770 494480 594730 1031000 751650 1108900 83533 1504000 702660 594170 684430 621610 530090 581750 978000 1 1 1 1 1 1 1 1 1 1 1 40100000 19417000 20683000 18599 2831 17082 94231;94232 114071;114072 114071 2 TFIAIKPDGVQR Unmodified 1343.7561 0.75613491 770;684 P15531;P15531-2;P22392-2;P22392 NME1;NME2 Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase B no no 0 0 0 1 By MS/MS By MS/MS 3.59 2.64 5 4 2 2 2 2 8 9 47.911 47.928 2;3 1.3207E-17 14744 20211116_3429_TMUAki_TMT10x_P_F2 189.58 160.27 98929000 156570000 1103900 174770000 205560000 227650000 106500000 152860000 142490000 123950000 151860000 92119000 146160000 10509000 177800000 194660000 226970000 114320000 158320000 143720000 122250000 146200000 18 18 12 18 18 18 18 18 18 18 18 62313000 97829000 852770 106610000 178530000 197090000 77657000 97779000 94139000 79821000 96362000 58025000 91318000 7471300 109500000 168690000 192970000 84556000 103890000 95128000 78697000 92888000 11 11 8 11 11 11 11 11 11 11 11 36616000 58738000 251100 68160000 27027000 30559000 28840000 55077000 48353000 44134000 55493000 34094000 54844000 3037600 68307000 25969000 34002000 29763000 54434000 48590000 43555000 53311000 7 7 4 7 7 7 7 7 7 7 7 50921000000 32043000000 18879000000 18600 684;770 17083 94233;94234;94235;94236;94237;94238;94239;94240;94241;94242;94243;94244;94245;94246;94247;94248;94249 114073;114074;114075;114076;114077;114078;114079;114080;114081;114082;114083;114084;114085;114086;114087;114088;114089;114090;114091;114092;114093;114094;114095 114078 23 TFIAVPASNSGLCIVNDELFVR Unmodified 2421.2362 0.23623089 3090 Q9UBU9 NXF1 Nuclear RNA export factor 1 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 79.335 79.323 3 1.529E-07 25527 20211116_3447_TMUAki_TMT10x_S_F8 91.729 75.786 6652300 10750000 150160 10936000 8655400 8347300 9428400 4254400 4059300 5116000 8140200 6195000 10031000 716040 11104000 8327500 8571400 9357000 4557900 4509400 4961000 7726200 3 3 2 3 3 3 3 3 3 3 3 2472700 3783100 84864 3715200 2862900 3723300 3647200 1354000 1265100 1599800 2873700 2302900 3529700 289560 3795000 2769900 3739300 3584800 1503600 1448300 1552300 2722400 1 1 1 1 1 1 1 1 1 1 1 4179600 6966500 65296 7220600 5792600 4624100 5781200 2900400 2794300 3516200 5266500 3892100 6501500 426480 7309400 5557600 4832100 5772200 3054300 3061100 3408700 5003800 2 2 1 2 2 2 2 2 2 2 2 1428700000 854810000 573910000 18601 3090 17084 94250;94251 114096;114097;114098 114097 3 TFIGPGGNMPGYLRPETAQGIFLNFKR Oxidation (M) 2996.5331 0.53308161 1001 P41250 GARS Glycine--tRNA ligase yes yes 0 0 1 2 By MS/MS By MS/MS 7 0 2 1 1 71.46 71.78 4 2.0915E-24 24310 20211116_3435_TMUAki_TMT10x_P_F7 142.45 132.03 19349000 32122000 19734 27876000 24945000 46196000 27657000 28845000 25296000 25922000 25463000 18015000 29957000 1584800 29012000 23980000 45541000 27839000 30116000 25843000 25437000 24558000 4 4 1 4 4 4 4 4 4 4 4 14017000 23727000 19734 21297000 19491000 40213000 21075000 21830000 18903000 19308000 19659000 13051000 22131000 1190100 22181000 18726000 39386000 21227000 23048000 19352000 18961000 18941000 3 3 1 3 3 3 3 3 3 3 3 5331900 8395100 0 6578800 5453300 5982800 6581800 7015300 6392800 6613300 5803400 4964200 7826800 394780 6830900 5254000 6154900 6611400 7068500 6490900 6475400 5616600 1 1 0 1 1 1 1 1 1 1 1 4151300000 1971400000 2179900000 18602 1001 17085 94252;94253 114099;114100;114101;114102 114099 1292 4 TFIGPGGNMPGYLRPETAQGIFLNFKR Unmodified 2980.5382 0.53816699 1001 P41250 GARS Glycine--tRNA ligase yes yes 0 0 0 2 By MS/MS 6.5 0.5 1 1 2 76.736 76.761 4 3.4124E-77 26902 20211116_3446_TMUAki_TMT10x_S_F7 244.67 231.19 18355000 30689000 80601 32279000 24657000 14561000 24913000 10399000 8151800 12176000 22736000 17090000 28642000 1612700 32553000 23649000 15833000 24738000 10837000 9544100 11819000 21481000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18355000 30689000 80601 32279000 24657000 14561000 24913000 10399000 8151800 12176000 22736000 17090000 28642000 1612700 32553000 23649000 15833000 24738000 10837000 9544100 11819000 21481000 2 2 1 2 2 2 2 2 2 2 2 2754400000 0 2754400000 18603 1001 17085 94254;94255 114103;114104 114104 2 TFIIGELHPDDRPK Unmodified 1636.8573 0.85730551 461 P00167;P00167-2 CYB5A Cytochrome b5 yes no 0 0 0 1 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 48.959 49.245 4 2.1749E-23 13487 20211116_3445_TMUAki_TMT10x_S_F6 186.56 156.88 13305000 21221000 195430 25092000 22690000 24907000 15546000 18945000 17940000 16291000 19356000 12390000 19816000 1385800 25322000 21587000 25252000 16217000 19484000 18196000 16020000 18628000 9 9 7 9 9 9 9 9 9 9 9 9488100 14936000 151740 17616000 18828000 21333000 12454000 13420000 12592000 11352000 13681000 8835200 13947000 1032400 17838000 17900000 21326000 12970000 13982000 12843000 11172000 13164000 6 6 5 6 6 6 6 6 6 6 6 3817200 6285200 43686 7476200 3862600 3574400 3092400 5525000 5347700 4939000 5674800 3554500 5869200 353380 7484500 3686600 3925900 3246900 5501500 5353300 4847800 5464100 3 3 2 3 3 3 3 3 3 3 3 2713700000 1302800000 1410900000 18604 461 17086 94256;94257;94258;94259;94260;94261 114105;114106;114107;114108;114109;114110;114111;114112 114112 8 TFKPIDLSDLK Unmodified 1275.7075 0.70745338 27 C9JLW8 FAM195B Protein FAM195B yes yes 0 0 0 1 By MS/MS By MS/MS 3.33 3.3 2 1 1 2 65.284 65.187 3 3.9422E-08 19707 20211116_3447_TMUAki_TMT10x_S_F8 123.02 91.379 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18605 27 17087 94262;94263;94264 114113;114114;114115 114115 3 TFLEFYEEK Unmodified 1204.5652 0.56520582 197 O43148;O43148-2 RNMT mRNA cap guanine-N7 methyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 72.191 72.028 2 2.4432E-05 25145 20211116_3430_TMUAki_TMT10x_P_F3 139.96 99.612 11188000 19036000 82780 17562000 12798000 18411000 13219000 10970000 10429000 11722000 13858000 10417000 17757000 998490 18033000 12285000 18537000 13300000 11552000 10853000 11417000 13262000 3 3 2 3 3 3 3 3 3 3 3 8046200 13287000 82780 12614000 8654500 14876000 9597200 7963800 7495800 8364900 9657100 7492400 12396000 752750 12949000 8327100 14860000 9620500 8457900 7794400 8153100 9249000 2 2 2 2 2 2 2 2 2 2 2 3141700 5749000 0 4948300 4143900 3535600 3621500 3006500 2933200 3357000 4200600 2925000 5361400 245740 5083500 3958400 3677100 3679500 3094000 3059100 3264200 4012900 1 1 0 1 1 1 1 1 1 1 1 1204100000 652570000 551580000 18606 197 17088 94265;94266;94267;94268;94269 114116;114117;114118;114119 114117 4 TFLHTVQR Unmodified 1000.5454 0.54541385 2907 Q9NQS7;Q9NQS7-2 INCENP Inner centromere protein yes no 0 0 0 0 By matching By MS/MS 1 0 2 1 1 32.472 32.488 3 0.0099431 8930 20211116_3439_TMUAki_TMT10x_S_F1 65.474 35.126 312050 527560 4441.2 537160 292600 245970 317250 387110 414910 334950 423860 290580 492300 29738 542960 281440 271710 323540 384900 418140 329270 408610 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 312050 527560 4441.2 537160 292600 245970 317250 387110 414910 334950 423860 290580 492300 29738 542960 281440 271710 323540 384900 418140 329270 408610 1 1 1 1 1 1 1 1 1 1 1 17984000 7379000 10606000 18607 2907 17089 94270;94271 114120 114120 1 TFLLEYHNR Unmodified 1191.6037 0.60365701 3192 Q9UNH7;Q9UNH7-2 SNX6 Sorting nexin-6;Sorting nexin-6, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 43.583 43.887 3 2.7607E-05 11586 20211116_3436_TMUAki_TMT10x_P_F8 143.03 123.27 7184000 11049000 16885 12977000 13951000 14187000 8675300 10344000 10093000 8898600 10101000 6687800 10317000 529410 13121000 13234000 14291000 9119400 10667000 10206000 8750400 9744200 5 5 3 5 5 5 5 5 5 5 5 5224500 8030100 6809 9642800 11978000 12559000 7174300 7421100 7241400 6643300 7152600 4863700 7499000 420090 9766900 11358000 12499000 7530400 7781200 7360800 6520200 6902600 3 3 2 3 3 3 3 3 3 3 3 1959500 3019100 10076 3334100 1972500 1627900 1501000 2922500 2851500 2255300 2948700 1824100 2818300 109320 3353600 1876000 1792700 1589000 2886100 2845300 2230100 2841500 2 2 1 2 2 2 2 2 2 2 2 1112700000 739420000 373240000 18608 3192 17090 94272;94273;94274;94275 114121;114122;114123;114124;114125 114123 5 TFLLQGLLR Unmodified 1059.6441 0.64406526 1097 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 37.502 37.459 3 0.093204 8991 20211116_3428_TMUAki_TMT10x_P_F1 30.797 12.978 3374600 6124200 25849 4821500 8092900 6702100 5077000 6044300 4732000 4372600 6357500 3142300 5709600 369950 5038900 7685600 6696900 5296900 6128600 4886700 4339300 6082600 2 2 2 2 2 2 2 2 2 2 2 2553200 4755200 16986 3595300 6919700 5834600 3871500 4633500 3586500 3378300 4992800 2377400 4432800 288670 3783200 6559300 5778700 4077600 4734000 3711100 3351100 4772800 1 1 1 1 1 1 1 1 1 1 1 821370 1368900 8862.2 1226200 1173300 867530 1205500 1410800 1145400 994300 1364700 764840 1276800 81285 1255700 1126300 918120 1219300 1394500 1175700 988250 1309700 1 1 1 1 1 1 1 1 1 1 1 282370000 148870000 133500000 18609 1097 17091 94276;94277 114126 114126 1 TFLRPPK Unmodified 857.51232 0.51232281 370 O75937 DNAJC8 DnaJ homolog subfamily C member 8 yes yes 0 0 0 1 By MS/MS By MS/MS 3.73 0.962 2 1 6 2 3 8 35.335 35.336 3 0.0099219 8846 20211116_3442_TMUAki_TMT10x_S_F4 89.369 48.34 11527000 17849000 281530 17918000 17431000 18226000 13180000 13568000 13207000 13438000 15500000 10735000 16655000 1297400 18279000 16624000 18443000 13592000 14026000 13516000 13130000 14881000 11 11 9 11 11 11 11 11 11 11 11 6705400 10352000 221740 10617000 12423000 13613000 7930600 8039500 7890100 8066300 9158800 6245000 9660100 842660 10857000 11812000 13558000 8278000 8456100 8073600 7876900 8795900 4 4 4 4 4 4 4 4 4 4 4 4821800 7497000 59795 7300700 5008100 4612900 5249800 5528400 5316700 5371900 6341200 4490000 6994800 454710 7421600 4811500 4885600 5314500 5570000 5442300 5252900 6085400 7 7 5 7 7 7 7 7 7 7 7 927830000 609840000 317990000 18610 370 17092 94278;94279;94280;94281;94282;94283;94284;94285;94286;94287;94288 114127;114128;114129;114130;114131;114132;114133;114134;114135;114136;114137;114138;114139 114135 13 TFLTLSLQDMASR Oxidation (M) 1497.7497 0.7497289 3199 Q9UNS2;Q9UNS2-2 COPS3 COP9 signalosome complex subunit 3 yes no 0 0 1 0 By MS/MS 1 0 1 1 66.02 65.782 2 0.095325 22499 20211116_3439_TMUAki_TMT10x_S_F1 53.028 33.241 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18611 3199 17093 94289 114140 114140 3188 1 TFLVGER Unmodified 820.4443 0.44430282 821 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 By MS/MS By MS/MS 5.1 1.58 2 2 2 2 1 1 4 6 42.044 42.154 2 0.0012535 10546 20211116_3445_TMUAki_TMT10x_S_F6 139.68 86.996 39934000 62543000 54796 66357000 51354000 49408000 43259000 39219000 41403000 39664000 50033000 37180000 58374000 3078100 67172000 49011000 51150000 44245000 40402000 42508000 38719000 47998000 10 10 3 10 10 10 10 10 10 10 10 15523000 24087000 38737 25473000 33184000 29651000 18586000 15905000 16595000 15457000 19899000 14453000 22481000 1456700 25951000 31446000 29640000 19554000 16851000 17087000 15115000 19093000 4 4 1 4 4 4 4 4 4 4 4 24411000 38456000 16058 40884000 18170000 19757000 24673000 23314000 24808000 24206000 30135000 22727000 35893000 1621400 41221000 17565000 21510000 24691000 23551000 25421000 23604000 28905000 6 6 2 6 6 6 6 6 6 6 6 4572000000 2767200000 1804800000 18612 821 17094 94290;94291;94292;94293;94294;94295;94296;94297;94298;94299 114141;114142;114143;114144;114145;114146;114147;114148;114149;114150 114149 10 TFLVWVNEEDHLR Unmodified 1656.826 0.82600539 642 P12277 CKB Creatine kinase B-type yes yes 0 0 0 0 By MS/MS By MS/MS 3.82 1.82 1 4 4 2 2 2 2 11 6 65.408 65.375 3 9.6861E-23 24710 20211116_3441_TMUAki_TMT10x_S_F3 200.21 174.22 63059000 103550000 267180 92446000 73090000 100420000 70568000 66253000 58113000 64578000 79298000 58709000 96581000 4719100 94771000 69976000 101040000 71326000 69035000 60417000 63139000 75840000 19 19 12 18 19 19 19 19 19 19 19 35121000 54826000 171930 48139000 39395000 70811000 40403000 35927000 30359000 33972000 43120000 32697000 51133000 2509600 49478000 37769000 69956000 40618000 38231000 31778000 33260000 41202000 11 11 8 10 11 11 11 11 11 11 11 27938000 48723000 95244 44307000 33695000 29606000 30165000 30325000 27754000 30605000 36178000 26011000 45447000 2209500 45292000 32208000 31084000 30708000 30805000 28639000 29879000 34639000 8 8 4 8 8 8 8 8 8 8 8 15224000000 8654300000 6570200000 18613 642 17095 94300;94301;94302;94303;94304;94305;94306;94307;94308;94309;94310;94311;94312;94313;94314;94315;94316 114151;114152;114153;114154;114155;114156;114157;114158;114159;114160;114161;114162;114163;114164;114165;114166;114167;114168;114169;114170;114171;114172 114166 22 TFNCGVGAVLVVSK Unmodified 1449.765 0.76498503 766 P22102 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 65.708 65.439 3 7.5171E-05 20612 20211116_3440_TMUAki_TMT10x_S_F2 91.789 70.232 9234500 15780000 211980 15265000 11426000 14615000 11238000 10622000 10071000 10787000 12377000 8599800 14722000 993850 15600000 10963000 14839000 11373000 11006000 10379000 10529000 11869000 3 3 3 3 3 3 3 3 3 3 3 4049700 6565300 96538 6271500 5085000 8691400 5428000 4366500 4449700 4335200 5528400 3771400 6125000 440220 6454900 4890200 8607800 5457600 4656900 4607900 4235300 5299700 1 1 1 1 1 1 1 1 1 1 1 5184800 9214600 115450 8993800 6340500 5923800 5809600 6255200 5621400 6452100 6848800 4828400 8597300 553630 9144800 6073200 6231600 5914900 6349100 5770600 6293300 6568800 2 2 2 2 2 2 2 2 2 2 2 746660000 471820000 274850000 18614 766 17096 94317;94318 114173;114174;114175 114174 3 TFNIKNDFTEEEEAQVR Unmodified 2068.9702 0.97016302 1402 P63208 SKP1 S-phase kinase-associated protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 1.12 2 2 2 2 4 4 57.683 57.524 3 1.5965E-47 17922 20211116_3442_TMUAki_TMT10x_S_F4 251.75 227.92 33406000 63346000 218310 50118000 45703000 52357000 38556000 49221000 46718000 43421000 52043000 31104000 59059000 2883900 52096000 43639000 53129000 39736000 50029000 47359000 42647000 50039000 9 9 5 9 9 9 9 9 9 9 9 4115500 7729100 0 5922100 6392400 10830000 6375500 6286200 5701900 5728000 6384600 3831200 7205300 290840 6242600 6123600 10628000 6447000 6604000 5854500 5617200 6137900 1 1 0 1 1 1 1 1 1 1 1 29291000 55617000 218310 44195000 39311000 41526000 32181000 42935000 41016000 37693000 45658000 27273000 51854000 2593000 45853000 37515000 42501000 33289000 43425000 41504000 37029000 43901000 8 8 5 8 8 8 8 8 8 8 8 4082800000 1168400000 2914300000 18615 1402 17097 94319;94320;94321;94322;94323;94324;94325;94326 114176;114177;114178;114179;114180;114181;114182;114183;114184;114185;114186;114187 114185 12 TFNIKNDFTEEEEAQVRK Unmodified 2197.0651 0.065126037 1402 P63208 SKP1 S-phase kinase-associated protein 1 yes yes 0 0 0 2 By MS/MS By MS/MS 4.8 1.17 1 1 1 2 2 3 54.263 54.294 4 3.1556E-31 15222 20211116_3444_TMUAki_TMT10x_S_F5 191.78 178.19 57169000 96409000 1048700 102570000 73172000 72931000 51755000 51008000 56208000 51055000 69298000 53237000 89983000 5892800 103760000 69683000 75632000 53755000 52969000 57451000 49861000 66444000 6 6 4 6 6 6 6 6 6 6 6 24568000 41710000 325360 43441000 40431000 47151000 29288000 23632000 23698000 23642000 31305000 22877000 38927000 2514000 44250000 38503000 47277000 30117000 25215000 24623000 23089000 29963000 3 3 1 3 3 3 3 3 3 3 3 32601000 54698000 723310 59131000 32741000 25779000 22467000 27376000 32510000 27414000 37994000 30360000 51056000 3378900 59512000 31180000 28355000 23637000 27754000 32828000 26772000 36481000 3 3 3 3 3 3 3 3 3 3 3 7547900000 3358900000 4189100000 18616 1402 17098 94327;94328;94329;94330;94331 114188;114189;114190;114191;114192;114193 114191 6 TFNIRHPEELSLLK Unmodified 1695.9308 0.93080481 2406 Q96AC1;Q96AC1-2;Q96AC1-3 FERMT2 Fermitin family homolog 2 yes no 0 0 0 1 By MS/MS 8 0 1 1 55.028 54.96 4 0.001954 15648 20211116_3447_TMUAki_TMT10x_S_F8 68.919 24.112 1885100 3507500 110550 3693300 2314500 2010100 2247300 3457200 2783700 2819700 3229400 1756000 3273600 265330 3729500 2224300 2184100 2299600 3422900 2824300 2780100 3101500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1885100 3507500 110550 3693300 2314500 2010100 2247300 3457200 2783700 2819700 3229400 1756000 3273600 265330 3729500 2224300 2184100 2299600 3422900 2824300 2780100 3101500 1 1 1 1 1 1 1 1 1 1 1 159540000 0 159540000 18617 2406 17099 94332 114194 114194 1 TFNLPLLMLGGGGYTIR Oxidation (M) 1837.976 0.97604044 2362 Q92769;Q92769-3 HDAC2 Histone deacetylase 2 yes no 0 0 1 0 By MS/MS By MS/MS 5.6 0.49 2 3 2 3 79.675 79.673 2;3 5.2599E-07 26850 20211116_3433_TMUAki_TMT10x_P_F5 103.46 87.327 10735000 17923000 83902 17315000 14044000 16785000 13000000 11117000 8652900 11043000 14013000 9995800 16721000 974290 17699000 13442000 17005000 13107000 11587000 9183300 10788000 13352000 5 5 2 5 5 5 5 5 5 5 5 4869300 7695800 57589 7644200 4796000 9835000 5349600 5141500 4047500 4754500 5944500 4534200 7180800 448690 7834800 4615500 9778700 5357100 5452800 4241900 4659400 5675800 3 3 1 3 3 3 3 3 3 3 3 5865800 10227000 26313 9670400 9248100 6950200 7650900 5975700 4605400 6288700 8068200 5461600 9540600 525590 9864000 8826800 7226300 7749900 6134200 4941300 6129000 7675900 2 2 1 2 2 2 2 2 2 2 2 4611900000 1498300000 3113600000 18618 2362 17100 94333;94334;94335;94336;94337 114195;114196;114197;114198;114199 114195 2700 5 TFNLPLLMLGGGGYTIR Unmodified 1821.9811 0.98112582 2362 Q92769;Q92769-3 HDAC2 Histone deacetylase 2 yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 2 4 3 3 80.986 81.002 2;3 1.3581E-52 28659 20211116_3446_TMUAki_TMT10x_S_F7 263.12 226.06 20108000 31732000 24478 33922000 23252000 16594000 21794000 8136200 6541900 9679500 19683000 18721000 29618000 1460000 34192000 22242000 17784000 21711000 8745300 7789000 9389900 18581000 7 7 1 7 7 7 7 7 7 7 7 7844700 12745000 0 13284000 7798800 8957100 8702700 3258500 2550000 3766200 7591900 7303700 11894000 591330 13449000 7496800 9263700 8589800 3615800 3042300 3657400 7167500 3 3 0 3 3 3 3 3 3 3 3 12264000 18988000 24478 20638000 15453000 7637000 13092000 4877700 3991900 5913300 12091000 11417000 17724000 868690 20743000 14745000 8520000 13121000 5129500 4746700 5732600 11413000 4 4 1 4 4 4 4 4 4 4 4 4580800000 1616000000 2964800000 18619 2362 17100 94338;94339;94340;94341;94342;94343 114200;114201;114202;114203;114204;114205;114206 114206 7 TFNMDEYVGLPR Oxidation (M) 1456.6657 0.66566492 1058 P46926;Q8TDQ7;Q8TDQ7-3;Q8TDQ7-2 GNPDA1;GNPDA2 Glucosamine-6-phosphate isomerase 1;Glucosamine-6-phosphate isomerase 2 yes no 0 0 1 0 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 53.362 53.422 2 2.2846E-05 17433 20211116_3430_TMUAki_TMT10x_P_F3 103.31 80.482 11069000 17535000 1335.6 17904000 13044000 17645000 11664000 16378000 16657000 15193000 15630000 10305000 16363000 816920 18235000 12464000 17963000 12058000 16680000 16690000 14887000 15109000 4 4 1 4 4 4 4 4 4 4 4 5448900 8129200 0 8101700 7606300 12164000 6908400 7523200 7822100 7447700 7321400 5072800 7585300 397220 8327700 7270200 12037000 7072200 7881000 7899900 7276900 7078200 2 2 0 2 2 2 2 2 2 2 2 5620200 9405400 1335.6 9802600 5437900 5480700 4755500 8854700 8834700 7745400 8308500 5232600 8777700 419700 9907500 5194100 5925800 4985700 8799300 8790600 7610300 8031200 2 2 1 2 2 2 2 2 2 2 2 1731400000 876750000 854680000 18620 1058 17101 94344;94345;94346;94347;94348 114207;114208;114209;114210;114211 114207 1379 5 TFNMDEYVGLPR Unmodified 1440.6708 0.6707503 1058 P46926;Q8TDQ7;Q8TDQ7-3;Q8TDQ7-2 GNPDA1;GNPDA2 Glucosamine-6-phosphate isomerase 1;Glucosamine-6-phosphate isomerase 2 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 66.634 66.748 2 1.4704E-07 20673 20211116_3445_TMUAki_TMT10x_S_F6 113.61 100.02 5868100 8231900 0 9772400 6262700 7479700 5886800 4001100 4432100 4900800 6130500 5461600 7687000 217820 9826400 5977700 7683100 5945900 4270500 4632800 4749300 5861300 1 1 0 1 1 1 1 1 1 1 1 5868100 8231900 0 9772400 6262700 7479700 5886800 4001100 4432100 4900800 6130500 5461600 7687000 217820 9826400 5977700 7683100 5945900 4270500 4632800 4749300 5861300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 351340000 351340000 0 18621 1058 17101 94349;94350 114212;114213 114213 2 TFNPGAGLPTDK Unmodified 1216.6088 0.60880197 584 P09661 SNRPA1 U2 small nuclear ribonucleoprotein A' yes yes 0 0 0 0 By MS/MS 6 0 1 1 51.709 51.81 2 2.2417E-07 14185 20211116_3434_TMUAki_TMT10x_P_F6 107.09 79.346 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18622 584 17102 94351 114214 114214 1 TFNQVEIKPEMIGHYLGEFSITYKPVK Oxidation (M) 3183.6315 0.63145825 1370 P62841 RPS15 40S ribosomal protein S15 yes yes 0 0 1 2 By MS/MS By MS/MS 2.08 0.759 3 5 4 6 6 75.501 75.418 4;5;6 1.3432E-33 25767 20211116_3429_TMUAki_TMT10x_P_F2 176.14 165.81 112960000 211920000 2069500 158000000 112010000 242410000 144510000 159710000 196520000 198410000 154130000 105190000 197540000 11041000 166260000 108330000 239890000 146500000 167710000 196140000 192180000 149990000 22 22 15 22 22 22 22 22 22 22 22 55420000 103400000 678090 75389000 46206000 145410000 61452000 75385000 90068000 93433000 68670000 51606000 96382000 4985900 79935000 44721000 142240000 62422000 80720000 89617000 90508000 66906000 11 11 7 11 11 11 11 11 11 11 11 57543000 108520000 1391400 82611000 65808000 97004000 83062000 84323000 106450000 104970000 85456000 53588000 101160000 6054900 86322000 63610000 97648000 84075000 86992000 106530000 101670000 83086000 11 11 8 11 11 11 11 11 11 11 11 33260000000 19008000000 14252000000 18623 1370 17103 94352;94353;94354;94355;94356;94357;94358;94359;94360;94361;94362;94363 114215;114216;114217;114218;114219;114220;114221;114222;114223;114224;114225;114226;114227;114228;114229;114230;114231;114232;114233;114234;114235;114236 114218 1843 22 TFNQVEIKPEMIGHYLGEFSITYKPVK Unmodified 3167.6365 0.63654363 1370 P62841 RPS15 40S ribosomal protein S15 yes yes 0 0 0 2 By MS/MS By matching 3.67 0.471 1 2 2 1 77.302 77.258 5 4.8725E-18 27118 20211116_3430_TMUAki_TMT10x_P_F3 136.67 126.88 19724000 31859000 116580 26580000 16903000 30046000 20534000 9485400 8444000 13406000 17047000 18366000 29708000 1704400 27541000 16305000 29934000 20264000 10799000 9424700 12932000 16178000 2 2 2 2 2 2 2 2 2 2 2 19724000 31859000 116580 26580000 16903000 30046000 20534000 9485400 8444000 13406000 17047000 18366000 29708000 1704400 27541000 16305000 29934000 20264000 10799000 9424700 12932000 16178000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5769200000 4361200000 1408000000 18624 1370 17103 94364;94365;94366 114237;114238 114237 2 TFNQVVKPR Unmodified 1087.6138 0.61382777 2378 Q92917 GPKOW G patch domain and KOW motifs-containing protein yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 35.568 35.328 3 0.00015778 11125 20211116_3441_TMUAki_TMT10x_S_F3 129.85 102.33 617150 943230 0 941700 659610 521430 660400 684950 716790 613430 825630 574610 880120 49530 954510 632340 560790 671570 686020 730600 602050 793090 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 617150 943230 0 941700 659610 521430 660400 684950 716790 613430 825630 574610 880120 49530 954510 632340 560790 671570 686020 730600 602050 793090 1 1 0 1 1 1 1 1 1 1 1 25490000 0 25490000 18625 2378 17104 94367;94368 114239;114240 114240 2 TFNTSTGGLLLPSDTK Unmodified 1650.8465 0.84646606 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 By MS/MS By MS/MS 7.14 0.639 1 4 2 4 3 63.436 63.785 2;3 1.6318E-46 21515 20211116_3446_TMUAki_TMT10x_S_F7 242.8 217.88 49707000 86540000 297100 100760000 65901000 73915000 52594000 57860000 56437000 55211000 67705000 46284000 80804000 4567300 101380000 62869000 76594000 54163000 59559000 57646000 54032000 64964000 8 8 6 8 8 8 8 8 8 8 8 23081000 38351000 20009 46124000 41584000 52974000 31713000 26316000 26012000 26344000 30279000 21491000 35814000 2149300 46607000 39623000 52945000 32507000 28102000 26863000 25728000 29077000 3 3 2 3 3 3 3 3 3 3 3 26626000 48189000 277090 54634000 24317000 20940000 20881000 31544000 30425000 28868000 37426000 24793000 44990000 2418000 54777000 23245000 23649000 21656000 31457000 30783000 28304000 35887000 5 5 4 5 5 5 5 5 5 5 5 8387000000 4701900000 3685100000 18626 647 17105 94369;94370;94371;94372;94373;94374;94375 114241;114242;114243;114244;114245;114246;114247;114248 114247 8 TFNTSTGGLLLPSDTKR Unmodified 1806.9476 0.94757708 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 1 By MS/MS By MS/MS 3 2.71 3 4 2 5 4 53.706 53.576 3;4 1.8755E-82 15714 20211116_3440_TMUAki_TMT10x_S_F2 335.1 297.55 41454000 76625000 182910 69993000 71242000 100630000 56980000 110920000 98886000 86744000 78485000 38599000 71474000 3910600 72331000 67955000 100860000 59840000 111530000 98042000 85715000 76343000 12 12 8 12 12 12 12 12 12 12 12 22443000 40523000 69270 38513000 53685000 80645000 43547000 59877000 51758000 46373000 40786000 20897000 37804000 2270000 40061000 51219000 79090000 44956000 61523000 51906000 45846000 39684000 6 6 4 6 6 6 6 6 6 6 6 19011000 36102000 113640 31480000 17557000 19988000 13433000 51040000 47128000 40371000 37699000 17702000 33670000 1640600 32269000 16736000 21769000 14885000 50007000 46136000 39868000 36659000 6 6 4 6 6 6 6 6 6 6 6 27386000000 17164000000 10222000000 18627 647 17106 94376;94377;94378;94379;94380;94381;94382;94383;94384 114249;114250;114251;114252;114253;114254;114255;114256;114257;114258;114259;114260 114257 12 TFNVDMYEEIHR Oxidation (M) 1568.6929 0.6929423 1592 Q13098;Q13098-5;Q13098-7 GPS1 COP9 signalosome complex subunit 1 yes no 0 0 1 0 By MS/MS By MS/MS 3 0 3 2 1 46.44 46.266 3 0.00048912 15624 20211116_3441_TMUAki_TMT10x_S_F3 80.469 62.66 1933800 3603300 41089 3347300 1828000 1853000 1609000 3594800 3336200 3045200 3217100 1800800 3361300 189490 3410500 1749300 2019100 1697000 3550600 3314200 2996800 3107100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1933800 3603300 41089 3347300 1828000 1853000 1609000 3594800 3336200 3045200 3217100 1800800 3361300 189490 3410500 1749300 2019100 1697000 3550600 3314200 2996800 3107100 2 2 1 2 2 2 2 2 2 2 2 145590000 106900000 38697000 18628 1592 17107 94385;94386;94387 114261;114262;114263 114263 2150 3 TFNVDMYEEIHRK Unmodified 1680.793 0.7929907 1592 Q13098;Q13098-5;Q13098-7 GPS1 COP9 signalosome complex subunit 1 yes no 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 48.153 48.276 4 9.2943E-10 13121 20211116_3445_TMUAki_TMT10x_S_F6 136.99 116.88 3799100 5398700 76860 7035800 4975800 4672000 3752800 2748600 2520900 3076100 4024400 3537900 5043700 403090 7026700 4745000 4862100 3832500 2901500 2671800 2990800 3835600 2 2 2 2 2 2 2 2 2 2 2 2181700 3079700 52401 3854800 3725300 3665900 2577600 1723400 1632500 1866300 2324000 2031700 2876600 251330 3874900 3546300 3702600 2645300 1854600 1726700 1816900 2220500 1 1 1 1 1 1 1 1 1 1 1 1617500 2319000 24459 3181100 1250500 1006100 1175200 1025200 888360 1209800 1700300 1506200 2167100 151750 3151800 1198600 1159500 1187100 1046900 945120 1173900 1615100 1 1 1 1 1 1 1 1 1 1 1 372480000 175470000 197010000 18629 1592 17108 94388;94389 114264;114265 114265 2 TFPGCTIR Unmodified 950.46439 0.46438634 3087 Q9UBT2;Q9UBT2-2 UBA2 SUMO-activating enzyme subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS 6.33 2.49 1 1 1 3 4 2 37.71 37.922 2 0.00069124 8470 20211116_3447_TMUAki_TMT10x_S_F8 135.77 80.325 6186500 9740500 175620 12029000 10569000 9621700 7290200 6951200 7077400 6054500 8543300 5761500 9097500 733050 12074000 10062000 9890400 7559600 7175400 7261400 5950100 8196100 9 9 8 9 9 9 9 9 9 9 9 3783100 5804400 110500 7442900 8450100 7628500 5290300 3919500 3902900 3423700 4970200 3523200 5422300 481990 7480100 8029600 7676600 5488400 4157500 4069200 3364200 4761500 5 5 5 5 5 5 5 5 5 5 5 2403400 3936100 65119 4586200 2118800 1993200 2000000 3031700 3174500 2630800 3573200 2238200 3675200 251060 4594000 2032200 2213800 2071200 3018000 3192200 2585900 3434600 4 4 3 4 4 4 4 4 4 4 4 238820000 155200000 83626000 18630 3087 17109 94390;94391;94392;94393;94394;94395 114266;114267;114268;114269;114270;114271;114272;114273;114274 114272 9 TFPLCFDDHDPAVIHENASQPEVLVPIR Unmodified 3215.571 0.57098326 1568 Q12824;Q12824-2 SMARCB1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 yes no 0 0 0 0 By MS/MS 4 0 1 1 72.141 72.196 4 1.9868E-06 23468 20211116_3431_TMUAki_TMT10x_P_F4 78.752 65.823 3254000 5340500 97010 4796600 2812000 6423100 3901000 3613900 3367200 3549100 3954000 3030500 4981200 354000 4956000 2729500 6380000 3883500 3814200 3469700 3468900 3796100 1 1 1 1 1 1 1 1 1 1 1 3254000 5340500 97010 4796600 2812000 6423100 3901000 3613900 3367200 3549100 3954000 3030500 4981200 354000 4956000 2729500 6380000 3883500 3814200 3469700 3468900 3796100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 460880000 460880000 0 18631 1568 17110 94396 114275 114275 1 TFPLDVGSIVGYSGQKK Unmodified 1794.9516 0.95159983 1070 P48147 PREP Prolyl endopeptidase yes yes 0 0 0 1 By MS/MS By MS/MS 3 0 3 1 2 71.367 71.009 3;4 3.33E-29 24654 20211116_3430_TMUAki_TMT10x_P_F3 185.33 171.92 19817000 34352000 239120 32616000 25090000 31029000 24470000 23608000 24635000 24170000 27110000 18452000 32047000 1845000 33372000 24050000 31542000 24859000 24394000 25143000 23582000 26075000 5 5 4 5 5 5 5 5 5 5 5 8144900 13733000 69921 13334000 9414100 17474000 10861000 10254000 10641000 10106000 11309000 7584200 12813000 758210 13693000 9067300 17384000 10934000 10785000 10859000 9875800 10889000 2 2 2 2 2 2 2 2 2 2 2 11672000 20618000 169200 19281000 15675000 13555000 13609000 13354000 13994000 14064000 15801000 10868000 19234000 1086800 19679000 14983000 14158000 13924000 13609000 14283000 13707000 15187000 3 3 2 3 3 3 3 3 3 3 3 1869400000 587200000 1282200000 18632 1070 17111 94397;94398;94399 114276;114277;114278;114279;114280 114276 5 TFPTVNPSTGEVICQVAEGDKEDVDK Unmodified 2834.328 0.3280186 500 P05091 ALDH2 Aldehyde dehydrogenase, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 3.86 0.639 2 4 1 3 4 68.935 68.808 3;4 5.14E-24 23777 20211116_3430_TMUAki_TMT10x_P_F3 157.68 146.29 30697000 52202000 152700 51044000 33955000 36031000 34733000 20411000 21622000 22534000 34185000 28582000 48706000 2678400 51931000 32583000 37281000 34785000 21604000 23016000 21921000 32588000 10 10 6 10 10 10 10 10 10 10 10 13162000 22184000 105240 21910000 13344000 20524000 15288000 9117600 9353000 9961200 14789000 12256000 20699000 1181500 22350000 12849000 20738000 15222000 9871100 9967600 9693900 14098000 4 4 2 4 4 4 4 4 4 4 4 17535000 30018000 47463 29134000 20611000 15507000 19445000 11293000 12269000 12573000 19397000 16327000 28007000 1497000 29581000 19734000 16543000 19563000 11733000 13049000 12227000 18491000 6 6 4 6 6 6 6 6 6 6 6 6598800000 2884700000 3714100000 18633 500 17112 94400;94401;94402;94403;94404;94405;94406 114281;114282;114283;114284;114285;114286;114287;114288;114289;114290 114282 10 TFPTVNPTTGEVIGHVAEGDRADVDR Unmodified 2752.3416 0.34163525 880 P30837 ALDH1B1 Aldehyde dehydrogenase X, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 53.474 53.48 4 4.6728E-40 18522 20211116_3441_TMUAki_TMT10x_S_F3 198.6 185.15 15322000 26316000 168710 26070000 20171000 27282000 19134000 21829000 20522000 18309000 21505000 14267000 24555000 742780 26631000 19322000 27595000 19505000 22365000 20852000 18027000 20714000 8 8 3 8 8 8 8 8 8 8 8 9130400 14750000 8685.7 14364000 12644000 20246000 13047000 11159000 11537000 9949100 11632000 8501100 13762000 379600 14769000 12132000 20059000 13166000 11768000 11806000 9766600 11218000 5 5 1 5 5 5 5 5 5 5 5 6191400 11567000 160020 11706000 7526300 7035200 6086900 10670000 8984900 8360000 9873200 5766000 10793000 363190 11863000 7190000 7536800 6339200 10596000 9045300 8259900 9496800 3 3 2 3 3 3 3 3 3 3 3 7025300000 3722700000 3302600000 18634 880 17113 94407;94408;94409;94410;94411;94412 114291;114292;114293;114294;114295;114296;114297;114298 114296 8 TFPVDILFSK Unmodified 1165.6383 0.63831118 2351 Q92620 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 yes yes 0 0 0 0 By MS/MS 8 0 1 1 79.458 79.428 2 0.00073649 25569 20211116_3447_TMUAki_TMT10x_S_F8 85.355 63.207 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18635 2351 17114 94413 114299 114299 1 TFPVLLR Unmodified 844.51707 0.51707383 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 59.067 58.769 2 0.0013566 17832 20211116_3440_TMUAki_TMT10x_S_F2 138.48 72.582 10665000 18442000 0 17281000 13997000 17445000 11981000 19946000 14370000 15902000 15270000 9929300 17204000 826990 17714000 13363000 17818000 12332000 20032000 14546000 15697000 14702000 3 3 0 3 3 3 3 3 3 3 3 3765200 5993000 0 5824800 5888300 9489800 5017900 6726900 5171800 5423800 5284900 3505800 5591500 337050 6009000 5623800 9379500 5140200 6939900 5258700 5350900 5094600 1 1 0 1 1 1 1 1 1 1 1 6899700 12449000 0 11456000 8108300 7955500 6963300 13219000 9197900 10478000 9984900 6423500 11613000 489940 11705000 7739400 8438700 7192200 13092000 9287400 10346000 9607700 2 2 0 2 2 2 2 2 2 2 2 1763000000 645110000 1117900000 18636 1433 17115 94414;94415;94416;94417;94418;94419 114300;114301;114302;114303;114304;114305 114304 6 TFQGHTNEVNAIK Unmodified 1457.7263 0.72629134 2741 Q9BZK7;O60907;O60907-2;Q9BQ87 TBL1XR1;TBL1X;TBL1Y F-box-like/WD repeat-containing protein TBL1XR1;F-box-like/WD repeat-containing protein TBL1X;F-box-like/WD repeat-containing protein TBL1Y yes no 0 0 0 0 By MS/MS By matching 5 0 2 1 1 35.442 35.51 3 3.7841E-06 8994 20211116_3433_TMUAki_TMT10x_P_F5 103.21 75.352 494580 754500 0 915030 1502900 1241600 652680 705820 722560 661350 811730 460400 704630 43263 927020 1418900 1232600 708660 743330 735190 647740 780280 1 1 0 1 1 1 1 1 1 1 1 494580 754500 0 915030 1502900 1241600 652680 705820 722560 661350 811730 460400 704630 43263 927020 1418900 1232600 708660 743330 735190 647740 780280 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 73673000 54357000 19316000 18637 2741 17116 94420;94421 114306 114306 1 TFREWDFDLK Unmodified 1355.651 0.65100113 2451 Q96EY4 TMA16 Translation machinery-associated protein 16 yes yes 0 0 0 1 By MS/MS 5 0 1 1 63.62 63.768 3 0.094661 20265 20211116_3433_TMUAki_TMT10x_P_F5 43.604 28.403 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18638 2451 17117 94422 114307 114307 1 TFSFAIPLIEK Unmodified 1264.7067 0.7067251 2918 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.39 1.92 3 6 17 2 2 3 8 25 57.5 57.455 2;3 8.6473E-15 26009 20211116_3428_TMUAki_TMT10x_P_F1 195.27 152.93 159340000 254390000 547090 242620000 168210000 227510000 185310000 139070000 133560000 150740000 190760000 148340000 237330000 11671000 248120000 161610000 230710000 185470000 146210000 140160000 146740000 182250000 25 25 15 25 25 25 25 25 25 25 25 94790000 143760000 292390 137560000 90916000 157130000 103360000 77359000 78773000 84382000 108990000 88247000 134120000 6342000 141070000 87392000 157070000 103430000 82889000 82286000 82123000 104210000 8 8 3 8 8 8 8 8 8 8 8 64545000 110630000 254700 105060000 77297000 70381000 81952000 61710000 54783000 66363000 81765000 60096000 103210000 5328800 107050000 74220000 73644000 82043000 63319000 57878000 64622000 78041000 17 17 12 17 17 17 17 17 17 17 17 29881000000 16575000000 13307000000 18639 2918 17118 94423;94424;94425;94426;94427;94428;94429;94430;94431;94432;94433;94434;94435;94436;94437;94438;94439;94440;94441;94442;94443;94444;94445;94446;94447;94448;94449;94450;94451;94452;94453;94454;94455 114308;114309;114310;114311;114312;114313;114314;114315;114316;114317;114318;114319;114320;114321;114322;114323;114324;114325;114326;114327;114328;114329;114330;114331;114332;114333;114334;114335;114336;114337;114338;114339;114340;114341;114342 114308 35 TFSFAIPLIER Unmodified 1292.7129 0.71287311 2621 Q9BQ39 DDX50 ATP-dependent RNA helicase DDX50 yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 78.612 78.593 2 0.00032874 25913 20211116_3440_TMUAki_TMT10x_S_F2 94.087 62.715 10122000 17756000 0 16183000 11921000 16018000 12655000 11919000 10157000 10857000 13312000 9423600 16562000 756300 16618000 11442000 16236000 12721000 12294000 10555000 10648000 12744000 2 2 0 2 2 2 2 2 2 2 2 5577900 10251000 0 8796800 5487800 11201000 6675400 6699500 5623400 5977800 7590300 5193200 9559900 418080 9112900 5289000 11162000 6676500 7017200 5836700 5867900 7261200 1 1 0 1 1 1 1 1 1 1 1 4544000 7504600 0 7386300 6432900 4816600 5979200 5220000 4534000 4879600 5721700 4230400 7002100 338220 7505200 6152600 5074400 6044000 5276800 4717900 4779700 5482800 1 1 0 1 1 1 1 1 1 1 1 2180300000 1194600000 985750000 18640 2621 17119 94456;94457;94458 114343;114344 114344 2 TFSHELSDFGLESTAGEIPVVAIR Unmodified 2574.2966 0.29658254 868 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 By MS/MS By MS/MS 4.36 1.72 3 2 2 3 2 2 7 7 77.493 77.477 3 6.4727E-87 28197 20211116_3441_TMUAki_TMT10x_S_F3 262.91 252.07 46576000 76739000 462190 69355000 49991000 65552000 52370000 34920000 36926000 39847000 55437000 43367000 71578000 3222900 71218000 47990000 66327000 52518000 37197000 38898000 38714000 52905000 17 17 6 17 17 17 17 17 17 17 17 28042000 45111000 119710 40766000 24379000 45173000 29465000 19715000 21117000 22520000 32474000 26108000 42077000 1481700 41961000 23493000 45175000 29363000 21414000 22251000 21879000 30974000 10 10 2 10 10 10 10 10 10 10 10 18535000 31627000 342480 28589000 25612000 20380000 22905000 15204000 15808000 17327000 22964000 17258000 29500000 1741200 29257000 24497000 21152000 23155000 15784000 16647000 16835000 21931000 7 7 4 7 7 7 7 7 7 7 7 24318000000 13401000000 10917000000 18641 868 17120 94459;94460;94461;94462;94463;94464;94465;94466;94467;94468;94469;94470;94471;94472 114345;114346;114347;114348;114349;114350;114351;114352;114353;114354;114355;114356;114357;114358;114359;114360;114361;114362;114363;114364 114357 20 TFSNVFGR Unmodified 926.46102 0.46101552 2066 Q7LBC6;Q7LBC6-2 KDM3B Lysine-specific demethylase 3B yes no 0 0 0 0 By MS/MS 2 0 1 1 49.944 49.678 2 0.049434 15465 20211116_3429_TMUAki_TMT10x_P_F2 63.961 51.429 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18642 2066 17121 94473 114365 114365 1 TFSSIPVSR Unmodified 992.5291 0.52909508 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 41.691 41.867 2 3.0261E-05 12810 20211116_3439_TMUAki_TMT10x_S_F1 106.68 71.065 2846500 5074600 51124 5203900 6305700 5699700 3826100 4528300 4735900 3730800 4841100 2650700 4735600 323740 5307100 5986400 5749500 4038800 4639400 4781800 3676600 4666800 2 2 1 2 2 2 2 2 2 2 2 1835900 3238100 51124 3368300 5192200 4751300 2890500 2972900 3027000 2399200 3133600 1709800 3022000 246860 3447700 4923800 4715100 3056600 3095200 3077200 2366800 3019600 1 1 1 1 1 1 1 1 1 1 1 1010600 1836500 0 1835500 1113500 948320 935540 1555500 1708900 1331700 1707500 940870 1713600 76873 1859300 1062600 1034500 982210 1544100 1704600 1309800 1647200 1 1 0 1 1 1 1 1 1 1 1 141350000 81418000 59936000 18643 1695 17122 94474;94475;94476 114366;114367;114368 114367 3 TFSVWYVPEVTGTHK Unmodified 1749.8726 0.87262123 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 2.8 2.64 2 2 1 3 2 67.171 67.052 3 1.4697E-09 20914 20211116_3428_TMUAki_TMT10x_P_F1 122.33 92.999 59426000 96559000 400580 98696000 69920000 102550000 70785000 52619000 46981000 58319000 69401000 55333000 90108000 5248800 100590000 67076000 103110000 71018000 56189000 49632000 56723000 66254000 9 9 6 9 9 9 9 9 9 9 9 49183000 79122000 303060 81428000 58202000 92363000 59272000 42835000 38075000 47299000 56277000 45796000 73838000 4402300 83071000 55846000 92306000 59410000 46185000 40308000 46011000 53725000 6 6 4 6 6 6 6 6 6 6 6 10243000 17437000 97517 17267000 11719000 10187000 11513000 9783600 8906500 11021000 13124000 9536700 16270000 846570 17522000 11230000 10805000 11609000 10005000 9324500 10712000 12529000 3 3 2 3 3 3 3 3 3 3 3 4726300000 3023900000 1702400000 18644 755 17123 94477;94478;94479;94480;94481 114369;114370;114371;114372;114373;114374;114375;114376;114377 114370 9 TFSWASVTSK Unmodified 1112.5502 0.55022446 1616 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.4 0.49 3 2 2 3 61.551 61.222 2 9.101E-19 20694 20211116_3430_TMUAki_TMT10x_P_F3 244.8 177.8 27083000 44785000 47939 54964000 53521000 43164000 37700000 16026000 14474000 18322000 32139000 25217000 41827000 2561300 55177000 50917000 44090000 38349000 17733000 16368000 17799000 30456000 4 4 2 4 4 4 4 4 4 4 4 21461000 34521000 31523 42015000 48574000 39741000 33662000 12318000 10997000 14204000 24746000 19981000 32240000 2089300 42299000 46195000 40010000 34223000 13965000 12667000 13795000 23446000 3 3 1 3 3 3 3 3 3 3 3 5622700 10264000 16416 12949000 4947700 3422300 4037500 3708300 3476300 4117300 7392300 5235400 9587800 472010 12878000 4722200 4080500 4125600 3768100 3700100 4004300 7009800 1 1 1 1 1 1 1 1 1 1 1 1858400000 1159000000 699440000 18645 1616 17124 94482;94483;94484;94485;94486 114378;114379;114380;114381;114382;114383 114380 6 TFSYAGFEMQPK Oxidation (M) 1420.6333 0.63330216 2609 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 1 0 By MS/MS By MS/MS 6.8 0.748 4 4 2 5 5 55.455 55.772 2;3 1.5964E-11 17629 20211116_3435_TMUAki_TMT10x_P_F7 168.25 145.51 65205000 107940000 928760 111820000 92220000 110960000 74223000 109130000 101990000 94323000 96902000 60718000 100740000 6435500 113790000 88015000 113050000 77088000 110600000 102360000 92731000 93635000 10 10 6 10 10 10 10 10 10 10 10 29286000 48316000 156990 50925000 52499000 78654000 43189000 49828000 46220000 43024000 41842000 27267000 45093000 2691000 52182000 50101000 77770000 44389000 51913000 46733000 42300000 40499000 5 5 2 5 5 5 5 5 5 5 5 35920000 59626000 771770 60898000 39721000 32307000 31034000 59299000 55769000 51299000 55059000 33451000 55642000 3744500 61609000 37914000 35282000 32699000 58689000 55628000 50431000 53136000 5 5 4 5 5 5 5 5 5 5 5 8132700000 4560200000 3572600000 18646 2609 17125 94487;94488;94489;94490;94491;94492;94493;94494;94495;94496 114384;114385;114386;114387;114388;114389;114390;114391;114392 114387 2856 9 TFSYAGFEMQPK Unmodified 1404.6384 0.63838754 2609 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 By MS/MS By MS/MS 7.57 0.495 3 4 4 3 63.796 64.129 2;3 3.137E-30 19874 20211116_3436_TMUAki_TMT10x_P_F8 257.88 221.19 39126000 62996000 173790 70644000 51735000 55769000 48399000 21532000 16678000 24256000 41126000 36429000 58811000 3230600 71306000 49510000 56962000 48286000 23701000 19223000 23577000 38916000 6 6 1 6 6 6 6 6 6 6 6 32750000 52822000 173790 59069000 44884000 52230000 43091000 18851000 14499000 20597000 34940000 30494000 49312000 2839000 59717000 42989000 52880000 42917000 20903000 16727000 20045000 33073000 5 5 1 5 5 5 5 5 5 5 5 6375600 10174000 0 11575000 6851000 3538700 5308500 2680600 2178600 3658100 6185900 5935200 9499100 391590 11589000 6521000 4081400 5368400 2798000 2495500 3532500 5843300 1 1 0 1 1 1 1 1 1 1 1 3546800000 2949600000 597190000 18647 2609 17125 94497;94498;94499;94500;94501;94502;94503 114393;114394;114395;114396;114397;114398;114399;114400 114396 8 TFSYPLDLLLK Unmodified 1308.7329 0.73293985 3235 Q9Y296;Q9Y296-2 TRAPPC4 Trafficking protein particle complex subunit 4 yes no 0 0 0 0 By MS/MS 2 0 1 1 80.502 80.492 2 2.486E-05 27929 20211116_3429_TMUAki_TMT10x_P_F2 104.22 69.689 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18648 3235 17126 94504 114401 114401 1 TFTANQIDEIK Unmodified 1278.6456 0.6455814 2753 Q9GZN1;Q9GZN1-2 ACTR6 Actin-related protein 6 yes no 0 0 0 0 By MS/MS 2 0 1 1 80.073 80.056 2 0.0032208 27754 20211116_3429_TMUAki_TMT10x_P_F2 76.143 38.056 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18649 2753 17127 94505 114402 114402 1 TFTDCFNCLPIAAIVDEK Unmodified 2112.986 0.98601278 1333;1334;957 P62140;P36873;P36873-2;P62136;P62136-2;P62136-3 PPP1CB;PPP1CC;PPP1CA Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit no no 0 0 0 0 By MS/MS By MS/MS 6.43 1.56 1 2 4 4 3 9 15 8 72.323 72.328 2;3;4 6.2359E-50 25810 20211116_3434_TMUAki_TMT10x_P_F6 222.56 200.36 165420000 264840000 1235200 262890000 195950000 185870000 176540000 89469000 65990000 106890000 169910000 154020000 247120000 11884000 267180000 187390000 191930000 176670000 96352000 75659000 103680000 160690000 31 31 12 31 31 31 31 31 31 31 31 86689000 140460000 677820 137240000 79481000 123720000 93516000 49127000 36067000 61131000 89700000 80719000 131060000 5335000 140030000 76589000 125200000 92345000 54073000 41109000 59210000 84870000 22 22 8 22 22 22 22 22 22 22 22 78727000 124380000 557370 125650000 116470000 62145000 83027000 40342000 29923000 45763000 80210000 73299000 116060000 6548800 127140000 110800000 66736000 84323000 42279000 34550000 44471000 75819000 9 9 4 9 9 9 9 9 9 9 9 33052000000 15330000000 17722000000 18650 1334;957;1333 17128 94506;94507;94508;94509;94510;94511;94512;94513;94514;94515;94516;94517;94518;94519;94520;94521;94522;94523;94524;94525;94526;94527;94528 114403;114404;114405;114406;114407;114408;114409;114410;114411;114412;114413;114414;114415;114416;114417;114418;114419;114420;114421;114422;114423;114424;114425;114426;114427;114428;114429;114430;114431;114432;114433;114434;114435 114412 33 TFTDHVMLFTQTK Oxidation (M) 1583.7654 0.76537896 2476 Q96GQ7 DDX27 Probable ATP-dependent RNA helicase DDX27 yes yes 0 0 1 0 By MS/MS 8 0 1 1 54.564 54.681 3 5.606E-05 16036 20211116_3436_TMUAki_TMT10x_P_F8 96.059 76.22 5050900 7698800 96876 8187600 7006800 12066000 6194100 7508000 7288700 6684800 7369200 4703200 7185600 493560 8376100 6701100 11950000 6359300 7839000 7370000 6562600 7106300 2 2 1 2 2 2 2 2 2 2 2 5050900 7698800 96876 8187600 7006800 12066000 6194100 7508000 7288700 6684800 7369200 4703200 7185600 493560 8376100 6701100 11950000 6359300 7839000 7370000 6562600 7106300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 420570000 420570000 0 18651 2476 17129 94529 114436;114437 114436 2769 2 TFTTQETITNAETAK Unmodified 1654.805 0.80499517 522;55 CON__Q3ZBD7;P06744;P06744-2 GPI Glucose-6-phosphate isomerase no no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 48.607 48.758 3 7.4616E-24 14337 20211116_3442_TMUAki_TMT10x_S_F4 182.02 144.6 + 11574000 16613000 178610 26291000 18528000 16390000 10931000 13160000 14973000 11134000 15974000 10777000 15537000 1207700 25989000 17585000 17235000 11611000 13483000 15091000 10957000 15379000 4 4 3 4 4 4 4 4 4 4 4 6179000 7917200 126860 11920000 15092000 12778000 7184200 6487800 7478600 5325300 7734300 5754200 7402500 755340 11891000 14280000 12823000 7709800 6879000 7604400 5248800 7453100 2 2 2 2 2 2 2 2 2 2 2 5394600 8695400 51748 14371000 3436100 3612200 3747300 6672600 7494700 5808500 8239900 5023200 8135000 452360 14099000 3304600 4412300 3900700 6603900 7487000 5708500 7925700 2 2 1 2 2 2 2 2 2 2 2 1472300000 817450000 654820000 18652 55;522 17130 94530;94531;94532;94533 114438;114439;114440;114441;114442;114443 114442 6 TFVEESIYNEFLER Unmodified 1774.8414 0.84138068 880 P30837 ALDH1B1 Aldehyde dehydrogenase X, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 1.43 0.495 4 3 4 3 78.498 78.476 2;3 9.2492E-20 27590 20211116_3439_TMUAki_TMT10x_S_F1 149.82 135.57 13662000 23692000 240980 18281000 16605000 26180000 19261000 19443000 17691000 18878000 21530000 12721000 22087000 1233200 19150000 15992000 26032000 19349000 20091000 18203000 18460000 20650000 3 3 2 3 3 3 3 3 3 3 3 6827100 11694000 240980 10054000 6675500 15041000 9405700 9073500 7837400 8914600 10601000 6358500 10905000 788470 10447000 6484000 14881000 9349300 9521700 8139900 8713000 10141000 2 2 2 2 2 2 2 2 2 2 2 6834500 11998000 0 8227700 9929200 11139000 9854900 10369000 9853900 9962900 10928000 6362300 11182000 444740 8703500 9508000 11151000 10000000 10570000 10063000 9747100 10509000 1 1 0 1 1 1 1 1 1 1 1 3532400000 2131100000 1401300000 18653 880 17131 94534;94535;94536;94537;94538;94539;94540 114444;114445;114446;114447 114447 4 TFVHVVPAKPEGTFK Unmodified 1655.9035 0.90352742 3052 Q9P0M9 MRPL27 39S ribosomal protein L27, mitochondrial yes yes 0 0 0 1 By MS/MS By matching 2.5 0.5 1 1 1 1 47.919 47.604 4 0.032857 14675 20211116_3429_TMUAki_TMT10x_P_F2 43.592 29.563 2531700 4278200 61884 4321900 3819100 4608000 3265800 3037300 2797900 2574500 3169000 2357700 3992200 285600 4410300 3651700 4641400 3327100 3153500 2880000 2533500 3045500 1 1 1 1 1 1 1 1 1 1 1 2531700 4278200 61884 4321900 3819100 4608000 3265800 3037300 2797900 2574500 3169000 2357700 3992200 285600 4410300 3651700 4641400 3327100 3153500 2880000 2533500 3045500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 345560000 293900000 51667000 18654 3052 17132 94541;94542 114448 114448 1 TFVNITPAEVGVLVGK Unmodified 1642.9294 0.92940782 540 P07737 PFN1 Profilin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.12 2.05 31 64 46 18 3 2 7 18 104 85 60.174 60.126 2;3 2.1622E-60 27262 20211116_3429_TMUAki_TMT10x_P_F2 293.13 265.65 667590000 1068900000 2196500 1057000000 694120000 885080000 762970000 462210000 482530000 541520000 755870000 621550000 997320000 49941000 1076600000 666920000 902760000 761630000 493660000 512860000 525610000 720690000 193 193 102 193 191 193 193 192 193 193 193 373900000 580500000 541270 587780000 319660000 583930000 369470000 258490000 266850000 300950000 414260000 348100000 541690000 24859000 599060000 307410000 587790000 368990000 280510000 281200000 292180000 395060000 110 110 54 110 108 110 110 109 110 110 110 293690000 488370000 1655200 469230000 374460000 301150000 393500000 203720000 215680000 240560000 341610000 273450000 455630000 25082000 477530000 359510000 314970000 392640000 213150000 231670000 233430000 325640000 83 83 48 83 83 83 83 83 83 83 83 193660000000 105620000000 88040000000 18655 540 17133 94543;94544;94545;94546;94547;94548;94549;94550;94551;94552;94553;94554;94555;94556;94557;94558;94559;94560;94561;94562;94563;94564;94565;94566;94567;94568;94569;94570;94571;94572;94573;94574;94575;94576;94577;94578;94579;94580;94581;94582;94583;94584;94585;94586;94587;94588;94589;94590;94591;94592;94593;94594;94595;94596;94597;94598;94599;94600;94601;94602;94603;94604;94605;94606;94607;94608;94609;94610;94611;94612;94613;94614;94615;94616;94617;94618;94619;94620;94621;94622;94623;94624;94625;94626;94627;94628;94629;94630;94631;94632;94633;94634;94635;94636;94637;94638;94639;94640;94641;94642;94643;94644;94645;94646;94647;94648;94649;94650;94651;94652;94653;94654;94655;94656;94657;94658;94659;94660;94661;94662;94663;94664;94665;94666;94667;94668;94669;94670;94671;94672;94673;94674;94675;94676;94677;94678;94679;94680;94681;94682;94683;94684;94685;94686;94687;94688;94689;94690;94691;94692;94693;94694;94695;94696;94697;94698;94699;94700;94701;94702;94703;94704;94705;94706;94707;94708;94709;94710;94711;94712;94713;94714;94715;94716;94717;94718;94719;94720;94721;94722;94723;94724;94725;94726;94727;94728;94729;94730;94731 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114498 233 TFVNITPAEVGVLVGKDR Unmodified 1914.0575 0.057461884 540 P07737 PFN1 Profilin-1 yes yes 0 0 0 1 By MS/MS By MS/MS 3.45 1.97 4 7 12 3 3 2 2 13 20 63.449 63.392 3;4 8.3675E-41 24192 20211116_3428_TMUAki_TMT10x_P_F1 210.98 184.85 190060000 362570000 3458000 209290000 300830000 504380000 332690000 487120000 403590000 389950000 354360000 176990000 337740000 15670000 228750000 289430000 495240000 337990000 493230000 405730000 384850000 343360000 51 51 34 51 51 51 51 51 51 51 51 115320000 213700000 1334100 115110000 146750000 363400000 217710000 319630000 265990000 251860000 218760000 107390000 199040000 7425500 128100000 142570000 353910000 218610000 325160000 266810000 248770000 212490000 15 15 9 15 15 15 15 15 15 15 15 74734000 148870000 2123900 94182000 154080000 140980000 114980000 167480000 137590000 138100000 135600000 69598000 138700000 8244300 100640000 146860000 141330000 119380000 168070000 138920000 136080000 130870000 36 36 25 36 36 36 36 36 36 36 36 55563000000 30510000000 25053000000 18656 540 17134 94732;94733;94734;94735;94736;94737;94738;94739;94740;94741;94742;94743;94744;94745;94746;94747;94748;94749;94750;94751;94752;94753;94754;94755;94756;94757;94758;94759;94760;94761;94762;94763;94764 114682;114683;114684;114685;114686;114687;114688;114689;114690;114691;114692;114693;114694;114695;114696;114697;114698;114699;114700;114701;114702;114703;114704;114705;114706;114707;114708;114709;114710;114711;114712;114713;114714;114715;114716;114717;114718;114719;114720;114721;114722;114723;114724;114725;114726;114727;114728;114729;114730;114731;114732;114733;114734;114735;114736 114683 55 TFVQEDIYDEFVER Unmodified 1788.8206 0.82064524 500 P05091;P05091-2 ALDH2 Aldehyde dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 1 0 4 2 2 77.14 77.114 2;3 2.1122E-43 27048 20211116_3439_TMUAki_TMT10x_S_F1 271.01 238.48 15324000 28936000 109300 24241000 18041000 25930000 20875000 15188000 14858000 17202000 19347000 14269000 26983000 1371000 25086000 17374000 26070000 20840000 16044000 15538000 16717000 18524000 4 4 2 4 4 4 4 4 4 4 4 8039300 15192000 109300 12711000 7956300 15973000 9975000 8111900 8462000 8818000 9724700 7486200 14167000 767220 13192000 7686300 15895000 9965700 8665500 8719600 8583000 9342000 2 2 2 2 2 2 2 2 2 2 2 7284800 13744000 0 11529000 10085000 9956300 10900000 7076000 6395500 8383700 9622100 6782500 12816000 603800 11894000 9687500 10175000 10874000 7378900 6817900 8134100 9182200 2 2 0 2 2 2 2 2 2 2 2 3621100000 1667200000 1953900000 18657 500 17135 94765;94766;94767;94768 114737;114738;114739;114740 114739 4 TFVVQGFGNVGLHSMR Oxidation (M) 1763.8777 0.87772338 463 P00367;P00367-3;P00367-2;P49448 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 3 0 2 1 1 54.424 54.147 3 1.2007E-05 18806 20211116_3441_TMUAki_TMT10x_S_F3 96.143 77.875 7478400 12122000 114740 11952000 9624400 13562000 7818300 11191000 10756000 10415000 10619000 6963400 11310000 677720 12229000 9184700 13663000 8115800 11475000 10809000 10204000 10248000 4 4 2 4 4 4 4 4 4 4 4 3961500 6048200 86378 5860000 5756600 9945400 4822600 5813900 4929300 5248100 5414300 3688900 5642900 397170 6052500 5499100 9786900 4943900 6102800 5027300 5148900 5207900 2 2 1 2 2 2 2 2 2 2 2 3516900 6073500 28357 6092000 3867800 3616200 2995700 5377500 5826500 5167300 5204800 3274500 5667300 280550 6176600 3685600 3876200 3171900 5372300 5781500 5055300 5040100 2 2 1 2 2 2 2 2 2 2 2 767810000 479190000 288630000 18658 463 17136 94769;94770 114741;114742;114743;114744 114743 348 4 TFYDPEPILCPCFMPN Unmodified 1999.8518 0.85182748 1430 P78395 PRAME Melanoma antigen preferentially expressed in tumors yes yes 0 0 0 0 By MS/MS 5 0 1 1 81.471 81.48 3 0.10528 26412 20211116_3444_TMUAki_TMT10x_S_F5 29.341 23.178 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18659 1430 17137 94771 114745 114745 1 TGAACLPFYSAAGSIPSGVSGR Unmodified 2125.0262 0.026238111 1569 Q12849 GRSF1 G-rich sequence factor 1 yes yes 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 67.203 66.912 3 0.016526 23018 20211116_3430_TMUAki_TMT10x_P_F3 41.911 30.472 2658000 4032400 78486 4371300 3229800 5801500 3393400 3540100 3624400 3465800 3301700 2475400 3763900 301520 4456900 3105700 5771100 3440600 3711200 3665700 3387900 3195000 1 1 1 1 1 1 1 1 1 1 1 2658000 4032400 78486 4371300 3229800 5801500 3393400 3540100 3624400 3465800 3301700 2475400 3763900 301520 4456900 3105700 5771100 3440600 3711200 3665700 3387900 3195000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 452540000 452540000 0 18660 1569 17138 94772;94773 114746;114747 114747 2 TGAAPIIDVVR Unmodified 1110.6397 0.63970816 1050 P46776 RPL27A 60S ribosomal protein L27a yes yes 0 0 0 0 By MS/MS By MS/MS 4.78 1.31 2 2 2 2 1 4 5 50.547 50.651 2 1.27E-14 13755 20211116_3444_TMUAki_TMT10x_S_F5 193.01 123.58 65764000 104160000 365430 122570000 99063000 103290000 68901000 78080000 80734000 73536000 90136000 61234000 97257000 5979200 123450000 94232000 105840000 71832000 80522000 81948000 72006000 86660000 12 12 7 12 12 12 12 12 12 12 12 37900000 57659000 175830 68477000 76056000 82437000 47164000 45163000 46651000 41806000 51322000 35288000 53843000 3612100 69303000 72195000 82283000 49336000 47699000 47648000 40968000 49364000 7 7 4 7 7 7 7 7 7 7 7 27864000 46496000 189610 54088000 23008000 20848000 21736000 32917000 34082000 31730000 38813000 25945000 43414000 2367100 54146000 22037000 23560000 22497000 32823000 34300000 31038000 37295000 5 5 3 5 5 5 5 5 5 5 5 12494000000 6708900000 5784900000 18661 1050 17139 94774;94775;94776;94777;94778;94779;94780;94781;94782 114748;114749;114750;114751;114752;114753;114754;114755;114756;114757;114758;114759 114757 12 TGADTTAAGPLFQQRPYPSPGAVLR Unmodified 2570.3241 0.32413469 291 O60828;O60828-5;O60828-2;O60828-4 PQBP1 Polyglutamine-binding protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 1.67 0.471 2 4 3 3 58.035 57.826 3;4 2.3067E-87 17466 20211116_3440_TMUAki_TMT10x_S_F2 270.34 248.22 36035000 64340000 257180 61172000 46528000 58134000 44497000 42223000 40557000 42227000 48063000 33551000 60024000 2952600 62584000 44550000 59053000 45119000 43732000 41699000 41241000 46132000 13 13 5 13 13 13 13 13 13 13 13 18897000 32138000 154720 30070000 23770000 39541000 25230000 21702000 20556000 21494000 23716000 17594000 29980000 1543500 30964000 22822000 39297000 25371000 22959000 21229000 21001000 22780000 6 6 2 6 6 6 6 6 6 6 6 17138000 32202000 102460 31102000 22758000 18593000 19267000 20521000 20001000 20733000 24347000 15957000 30044000 1409100 31620000 21728000 19756000 19748000 20773000 20470000 20240000 23352000 7 7 3 7 7 7 7 7 7 7 7 7041200000 3910700000 3130500000 18662 291 17140 94783;94784;94785;94786;94787;94788 114760;114761;114762;114763;114764;114765;114766;114767;114768;114769;114770;114771;114772 114769 13 TGAEGAVLDEAK Unmodified 1159.5721 0.57208211 906;262 O60282;Q12840;O60282-2;P33176 KIF5C;KIF5A;KIF5B Kinesin heavy chain isoform 5C;Kinesin heavy chain isoform 5A;Kinesin-1 heavy chain no no 0 0 0 0 By MS/MS 2 0 1 1 42.739 42.777 3 0.045439 11328 20211116_3440_TMUAki_TMT10x_S_F2 40.516 15.724 653010 1062700 2170.4 1124600 615040 588980 505160 716870 659390 584950 854170 608030 991810 55630 1134900 587100 635920 522920 718460 670970 576730 817950 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 653010 1062700 2170.4 1124600 615040 588980 505160 716870 659390 584950 854170 608030 991810 55630 1134900 587100 635920 522920 718460 670970 576730 817950 1 1 1 1 1 1 1 1 1 1 1 30812000 0 30812000 18663 262;906 17141 94789 114773 114773 1 TGAESISLLELCR Unmodified 1447.7341 0.73407884 255 O60216 RAD21 Double-strand-break repair protein rad21 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 63.724 63.792 2 1.5151E-50 20018 20211116_3431_TMUAki_TMT10x_P_F4 268.58 222.58 2760300 4887300 0 4889900 3106400 2969100 3002100 3459700 2744000 3369600 3795700 2569900 4560400 207760 4959600 2974200 3154200 3042600 3490100 2840200 3294700 3629000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2760300 4887300 0 4889900 3106400 2969100 3002100 3459700 2744000 3369600 3795700 2569900 4560400 207760 4959600 2974200 3154200 3042600 3490100 2840200 3294700 3629000 1 1 0 1 1 1 1 1 1 1 1 694570000 0 694570000 18664 255 17142 94790;94791 114774;114775 114774 2 TGAFALPILNALLETPQR Unmodified 1924.0782 0.078197327 2779 Q9H0S4;Q9H0S4-2 DDX47 Probable ATP-dependent RNA helicase DDX47 yes no 0 0 0 0 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 82.204 82.189 2;3 1.2103E-17 27588 20211116_3431_TMUAki_TMT10x_P_F4 152.25 128.4 2841900 4994200 15166 5113300 3315300 4182100 3611900 2720100 2700400 2964200 3648400 2646000 4660500 238140 5194100 3186000 4285000 3620000 2846700 2820700 2884900 3490100 4 4 2 4 4 4 4 4 4 4 4 919420 1634400 13653 1850900 1124200 1935900 1054800 876220 829360 1008200 1202800 856180 1525900 91819 1874200 1077000 1943100 1066500 948310 866850 979210 1148800 1 1 1 1 1 1 1 1 1 1 1 1922400 3359800 1512.9 3262500 2191000 2246200 2557200 1843900 1871000 1956000 2445600 1789800 3134700 146320 3319900 2109000 2341900 2553500 1898400 1953900 1905700 2341400 3 3 1 3 3 3 3 3 3 3 3 1002100000 496900000 505180000 18665 2779 17143 94792;94793;94794;94795;94796 114776;114777;114778;114779 114776 4 TGAFSIPVIQIVYETLK Unmodified 1878.0503 0.050251242 2334 Q92499;Q92499-2 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 83.408 83.408 3 2.0792E-15 28449 20211116_3442_TMUAki_TMT10x_S_F4 144.29 114.96 2549500 4203600 623.39 4009100 2533900 2275100 2782600 1431200 1816700 1849100 2736200 2373800 3921700 206990 4077800 2435600 2405700 2779600 1510300 1923100 1788700 2611100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2549500 4203600 623.39 4009100 2533900 2275100 2782600 1431200 1816700 1849100 2736200 2373800 3921700 206990 4077800 2435600 2405700 2779600 1510300 1923100 1788700 2611100 2 2 1 2 2 2 2 2 2 2 2 285080000 0 285080000 18666 2334 17144 94797;94798 114780;114781 114780 2 TGAFSIPVIQIVYETLKDQQEGK Unmodified 2563.3534 0.35336913 2334 Q92499;Q92499-2 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 1 By MS/MS By MS/MS 2 0 4 2 2 81.848 81.842 3;4 1.962E-36 27182 20211116_3440_TMUAki_TMT10x_S_F2 190.63 167.97 6284100 10634000 0 5949800 8342900 9961600 7826400 6630100 5667400 6293500 7369600 5850700 9905500 227710 6460600 7983300 9825900 7898800 6899100 5920500 6160400 7056500 4 4 0 4 4 4 4 4 4 4 4 2277400 3599300 0 2340100 2333500 4355200 2751300 2425700 1987300 2335200 2755300 2120200 3353800 152880 2506400 2245600 4269200 2745300 2560900 2082400 2284400 2634100 2 2 0 2 2 2 2 2 2 2 2 4006700 7035200 0 3609600 6009400 5606300 5075000 4204500 3680100 3958200 4614400 3730500 6551700 74827 3954200 5737800 5556700 5153500 4338200 3838000 3876000 4422400 2 2 0 2 2 2 2 2 2 2 2 1511300000 475830000 1035500000 18667 2334 17145 94799;94800;94801;94802 114782;114783;114784;114785 114784 4 TGAFSIPVIQIVYETLKDQQEGKK Unmodified 2691.4483 0.44833215 2334 Q92499;Q92499-2 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 2 By MS/MS By MS/MS 4.43 0.495 4 3 3 4 80.252 80.253 4;5 1.322E-29 27149 20211116_3442_TMUAki_TMT10x_S_F4 175.86 160.58 50710000 88434000 351930 53430000 73151000 78177000 62545000 44667000 37458000 43133000 58034000 47218000 82388000 4653300 57350000 69882000 77362000 63220000 47060000 39935000 42189000 55346000 11 11 4 11 11 11 11 11 11 11 11 19270000 34216000 120690 20135000 19915000 38764000 23874000 18494000 16270000 18201000 23488000 17942000 31875000 1562200 21814000 19192000 37885000 23774000 19818000 17140000 17788000 22435000 5 5 1 5 5 5 5 5 5 5 5 31440000 54218000 231240 33296000 53235000 39413000 38672000 26173000 21189000 24932000 34545000 29275000 50513000 3091100 35536000 50690000 39476000 39447000 27242000 22795000 24401000 32911000 6 6 3 6 6 6 6 6 6 6 6 13706000000 4363700000 9342600000 18668 2334 17146 94803;94804;94805;94806;94807;94808;94809 114786;114787;114788;114789;114790;114791;114792;114793;114794;114795;114796 114792 11 TGAHLELSLAK Unmodified 1138.6346 0.63462279 1467 Q00341;Q00341-2 HDLBP Vigilin yes no 0 0 0 0 By matching By MS/MS 6.33 0.471 2 1 1 2 45.152 45.272 3 6.807E-06 11878 20211116_3445_TMUAki_TMT10x_S_F6 112.13 91.224 1678000 2906600 17658 2813100 1829300 1378900 1622400 1702400 1335100 1540600 2257300 1562500 2711800 157690 2855000 1749900 1500400 1647600 1709700 1403600 1511300 2149000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1678000 2906600 17658 2813100 1829300 1378900 1622400 1702400 1335100 1540600 2257300 1562500 2711800 157690 2855000 1749900 1500400 1647600 1709700 1403600 1511300 2149000 1 1 1 1 1 1 1 1 1 1 1 271100000 194220000 76881000 18669 1467 17147 94810;94811;94812 114797;114798 114797 2 TGAIVDVPVGEELLGR Unmodified 1623.8832 0.88318591 805 P25705;P25705-2 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 3.35 1.23 1 4 4 4 4 7 10 72.034 71.888 2;3 8.7655E-60 23782 20211116_3442_TMUAki_TMT10x_S_F4 282.92 231.85 68034000 120110000 361860 95128000 91889000 127220000 92498000 110920000 92615000 97218000 100820000 63343000 111980000 5488100 99290000 88091000 127260000 93796000 113180000 94506000 95512000 97008000 18 18 7 18 18 18 18 18 18 18 18 32352000 56087000 298210 43322000 35968000 80468000 45777000 57821000 49111000 51919000 50692000 30124000 52287000 2769300 45653000 34737000 79175000 46024000 59755000 49872000 50950000 48852000 9 9 5 9 9 9 9 9 9 9 9 35682000 64019000 63656 51805000 55921000 46753000 46721000 53094000 43504000 45299000 50132000 33219000 59691000 2718800 53637000 53355000 48083000 47773000 53429000 44634000 44563000 48156000 9 9 2 9 9 9 9 9 9 9 9 17107000000 8792000000 8315200000 18670 805 17148 94813;94814;94815;94816;94817;94818;94819;94820;94821;94822;94823;94824;94825;94826;94827;94828;94829 114799;114800;114801;114802;114803;114804;114805;114806;114807;114808;114809;114810;114811;114812;114813;114814;114815;114816;114817;114818;114819 114815 21 TGALLLQGFIQDR Unmodified 1430.7882 0.78816332 1539 Q07812;Q07812-2;Q07812-5;Q07812-7;Q07812-8 BAX Apoptosis regulator BAX yes no 0 0 0 0 By MS/MS By MS/MS 1.4 0.49 3 2 3 2 76.383 76.33 2;3 6.2431E-18 24634 20211116_3428_TMUAki_TMT10x_P_F1 147.72 85.46 11791000 19325000 64505 18482000 14477000 9909000 16065000 7284700 6545200 7528000 13123000 10979000 18029000 1059800 18786000 13924000 10564000 15918000 7546300 7308600 7342200 12456000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11791000 19325000 64505 18482000 14477000 9909000 16065000 7284700 6545200 7528000 13123000 10979000 18029000 1059800 18786000 13924000 10564000 15918000 7546300 7308600 7342200 12456000 2 2 1 2 2 2 2 2 2 2 2 941880000 0 941880000 18671 1539 17149 94830;94831;94832;94833;94834 114820;114821;114822;114823;114824 114820 5 TGAPQYGSYGTAPVNLNIK Unmodified 1949.9847 0.98469087 2019 Q6UN15;Q6UN15-3;Q6UN15-4;Q6UN15-5 FIP1L1 Pre-mRNA 3'-end-processing factor FIP1 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 59.749 59.712 3 5.4824E-18 20063 20211116_3439_TMUAki_TMT10x_S_F1 153.86 135.94 11441000 19828000 193120 19233000 15128000 19944000 13654000 15569000 14579000 14025000 15966000 10654000 18500000 1177100 19674000 14480000 20176000 13955000 16004000 14840000 13762000 15359000 5 5 4 5 5 5 5 5 5 5 5 6734200 11664000 137010 10621000 10073000 15311000 9324500 8802600 8140800 8011400 8921400 6271200 10880000 729700 10979000 9647400 15162000 9460700 9254600 8361400 7856900 8582000 3 3 2 3 3 3 3 3 3 3 3 4707100 8164200 56105 8611700 5055300 4633900 4329400 6766200 6438100 6014000 7045000 4383200 7619700 447420 8694300 4832400 5014000 4494700 6749300 6479000 5904600 6777300 2 2 2 2 2 2 2 2 2 2 2 1612700000 1167300000 445440000 18672 2019 17150 94835;94836;94837 114825;114826;114827;114828;114829 114829 5 TGASFQQAQEEFSQGIFSSR Unmodified 2204.0134 0.013424818 166 O15127 SCAMP2 Secretory carrier-associated membrane protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 71.89 72.054 3 6.0789E-07 24924 20211116_3446_TMUAki_TMT10x_S_F7 93.849 80.017 21141000 36875000 816140 30305000 32272000 44858000 31881000 64841000 79959000 61732000 46843000 19690000 34384000 2669200 31598000 30984000 45250000 33847000 64825000 78066000 60419000 46213000 4 4 4 4 4 4 4 4 4 4 4 8866700 13877000 379580 13941000 14707000 22632000 15127000 21230000 21372000 18219000 15209000 8258600 12949000 1170700 14347000 14136000 22489000 15515000 21566000 21250000 17918000 14863000 2 2 2 2 2 2 2 2 2 2 2 12274000 22998000 436560 16364000 17565000 22226000 16754000 43612000 58588000 43513000 31634000 11432000 21435000 1498600 17250000 16848000 22761000 18332000 43259000 56816000 42501000 31351000 2 2 2 2 2 2 2 2 2 2 2 1999000000 1278300000 720620000 18673 166 17151 94838;94839;94840 114830;114831;114832;114833 114832 4 TGASVLNK Unmodified 788.43922 0.43921744 2334 Q92499;Q92499-2 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 By MS/MS By MS/MS 6.58 0.64 1 3 8 11 1 29.202 29.263 2 0.0032944 6001 20211116_3434_TMUAki_TMT10x_P_F6 101.43 58.184 4520900 7272700 27816 7003600 6671900 8360100 4958700 4955400 5503400 4511500 5746400 4209500 6785200 414220 7184100 6354800 8356500 5136200 5196900 5583500 4424500 5535800 9 9 3 9 9 9 9 9 9 9 9 3690500 5913900 27816 5733400 5807700 7680600 4108100 4254800 4779000 3872000 4769800 3436400 5517600 351030 5890900 5526900 7627400 4276600 4487400 4832100 3797300 4601600 8 8 3 8 8 8 8 8 8 8 8 830360 1358800 0 1270200 864210 679470 850590 700620 724410 639520 976560 773100 1267600 63183 1293200 827900 729110 859590 709440 751430 627100 934250 1 1 0 1 1 1 1 1 1 1 1 89851000 78400000 11451000 18674 2334 17152 94841;94842;94843;94844;94845;94846;94847;94848;94849;94850;94851;94852 114834;114835;114836;114837;114838;114839;114840;114841;114842;114843;114844;114845;114846;114847;114848;114849 114837 16 TGAYQYTIR Unmodified 1071.5349 0.53490874 2286 Q8TEM1;Q8TEM1-2 NUP210 Nuclear pore membrane glycoprotein 210 yes no 0 0 0 0 By MS/MS 7 0 1 1 35.168 35.602 2 0.0066575 9605 20211116_3435_TMUAki_TMT10x_P_F7 69.812 33.626 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18675 2286 17153 94853 114850 114850 1 TGCNVLLIQK Unmodified 1144.6274 0.62742892 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 By MS/MS By MS/MS 2.4 2.8 4 1 3 2 53.17 52.977 2;3 7.6837E-11 15357 20211116_3436_TMUAki_TMT10x_P_F8 182.65 138.94 8627500 14371000 123770 16529000 13896000 12582000 9325200 11346000 10188000 9813400 13629000 8033700 13417000 866100 16650000 13214000 13033000 9724600 11552000 10448000 9647400 13041000 4 4 2 4 4 4 4 4 4 4 4 2612200 4198400 0 4720100 8312200 7183600 3631800 3498100 3117700 2965000 4372800 2432200 3919500 283950 4815200 7851600 7083400 3912700 3726700 3238800 2917700 4179400 1 1 0 1 1 1 1 1 1 1 1 6015300 10172000 123770 11809000 5583900 5398100 5693300 7847600 7069800 6848400 9256400 5601500 9497900 582150 11835000 5362700 5949600 5811900 7825400 7209700 6729600 8861700 3 3 2 3 3 3 3 3 3 3 3 703830000 330900000 372930000 18676 1147 17154 94854;94855;94856;94857;94858 114851;114852;114853;114854;114855;114856 114853 6 TGCTFPEKPDFH Unmodified 1434.6238 0.6238001 1241 P55263;P55263-3;P55263-4;P55263-2 ADK Adenosine kinase yes no 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 45.48 45.634 3 2.9551E-05 11658 20211116_3434_TMUAki_TMT10x_P_F6 92.295 70.097 10741000 16408000 124540 20905000 19080000 16804000 11680000 16197000 15558000 12991000 16038000 10002000 15328000 1092300 20948000 18115000 17358000 12354000 16402000 15675000 12819000 15457000 5 5 3 5 5 5 5 5 5 5 5 5186600 7725600 69942 10226000 14438000 12760000 7676200 7755300 7330700 6080000 7583800 4829500 7218200 596520 10293000 13676000 12730000 8129200 8087500 7481800 6007000 7307900 2 2 1 2 2 2 2 2 2 2 2 5554600 8682800 54594 10680000 4642600 4044700 4003400 8441300 8227700 6910600 8454600 5172300 8109400 495800 10655000 4438600 4628500 4225000 8314800 8193400 6812400 8148800 3 3 2 3 3 3 3 3 3 3 3 642420000 294440000 347980000 18677 1241 17155 94859;94860;94861;94862 114857;114858;114859;114860;114861;114862 114859 6 TGDAISVMSEVAQTLLTQDVR Unmodified 2233.126 0.12601173 2615 Q99943 AGPAT1 1-acyl-sn-glycerol-3-phosphate acyltransferase alpha yes yes 0 0 0 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 1 3 83.02 83.032 3 2.6303E-44 27642 20211116_3436_TMUAki_TMT10x_P_F8 200.6 179.07 1537300 2498300 10899 2331400 2016800 2145100 2008700 1876400 1987800 2057400 2230500 1431400 2330500 128820 2387400 1933200 2190700 2037300 1926800 2031800 2001900 2144200 6 6 2 6 6 6 6 6 6 6 6 377190 573130 4018.4 593940 401270 736990 487470 480870 506730 501170 557390 351220 534860 33300 606590 387030 736220 490550 502450 516460 488630 536120 2 2 1 2 2 2 2 2 2 2 2 1160100 1925100 6880.7 1737500 1615500 1408100 1521200 1395500 1481100 1556200 1673100 1080100 1795600 95518 1780900 1546200 1454500 1546700 1424300 1515300 1513300 1608000 4 4 1 4 4 4 4 4 4 4 4 525870000 70607000 455260000 18678 2615 17156 94863;94864;94865;94866 114863;114864;114865;114866;114867;114868 114864 6 TGDFQLHTNVNDGTEFGGSIYQK Unmodified 2527.1615 0.16154562 1034 P45880;P45880-2;P45880-1 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 5.26 1.12 1 4 6 5 3 10 9 59.061 59.228 2;3;4 1.5248E-90 18407 20211116_3433_TMUAki_TMT10x_P_F5 278.39 242.1 175820000 311150000 1179600 294980000 202880000 253100000 200280000 212780000 190130000 205140000 228640000 163690000 290270000 13141000 301450000 194370000 259520000 202980000 218150000 195240000 200670000 219370000 28 28 13 28 28 28 28 28 28 28 28 82668000 142100000 493960 137140000 91671000 154420000 101190000 100170000 89581000 92735000 103280000 76966000 132580000 5998400 140520000 88089000 155030000 101790000 104360000 92127000 90877000 99202000 14 14 7 14 14 14 14 14 14 14 14 93152000 169050000 685670 157840000 111210000 98678000 99094000 112610000 100550000 112410000 125360000 86727000 157700000 7142800 160930000 106280000 104490000 101190000 113790000 103110000 109790000 120170000 14 14 6 14 14 14 14 14 14 14 14 43711000000 20823000000 22888000000 18679 1034 17157 94867;94868;94869;94870;94871;94872;94873;94874;94875;94876;94877;94878;94879;94880;94881;94882;94883;94884;94885 114869;114870;114871;114872;114873;114874;114875;114876;114877;114878;114879;114880;114881;114882;114883;114884;114885;114886;114887;114888;114889;114890;114891;114892;114893;114894;114895;114896;114897;114898 114876 30 TGDPQETLRR Unmodified 1171.5945 0.59454889 1741 Q14980;Q14980-2;Q14980-5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 1 By MS/MS 3 0 1 1 27.668 27.384 3 0.0009404 8048 20211116_3441_TMUAki_TMT10x_S_F3 86.344 57.618 119400 200430 0 177440 161860 102400 163490 105980 111130 103940 154660 111160 186940 8510.3 181520 155110 109030 164130 107510 116890 101600 147850 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 119400 200430 0 177440 161860 102400 163490 105980 111130 103940 154660 111160 186940 8510.3 181520 155110 109030 164130 107510 116890 101600 147850 1 1 0 1 1 1 1 1 1 1 1 6045600 0 6045600 18680 1741 17158 94886 114899 114899 1 TGDQEERQDYINLDESEAAAFDDEWRR Unmodified 3257.4134 0.41335622 1828 Q15773 MLF2 Myeloid leukemia factor 2 yes yes 0 0 0 2 By MS/MS 1 0 1 1 61.983 61.707 4 4.8739E-77 20872 20211116_3439_TMUAki_TMT10x_S_F1 239.13 232.18 1853100 3377300 0 2943600 2262500 1865000 1878000 1882700 1698100 1805600 2545600 1725300 3149800 148730 3017500 2159000 1966800 1919500 1911000 1765500 1766700 2429400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1853100 3377300 0 2943600 2262500 1865000 1878000 1882700 1698100 1805600 2545600 1725300 3149800 148730 3017500 2159000 1966800 1919500 1911000 1765500 1766700 2429400 1 1 0 1 1 1 1 1 1 1 1 705130000 0 705130000 18681 1828 17159 94887 114900 114900 1 TGEAIVDAALSALR Unmodified 1385.7514 0.75144346 1769 Q15084;Q15084-5;Q15084-3;Q15084-4;Q15084-2 PDIA6 Protein disulfide-isomerase A6 yes no 0 0 0 0 By MS/MS By MS/MS 5.77 1.25 3 2 4 3 1 7 6 79.481 79.487 2;3 5.0893E-43 25605 20211116_3444_TMUAki_TMT10x_S_F5 248.56 223.56 42274000 69595000 72153 61685000 42914000 62952000 53854000 37782000 41059000 42164000 52204000 39361000 64910000 3269800 63507000 41414000 63487000 53658000 39816000 42726000 40999000 50014000 7 7 3 7 7 7 7 7 7 7 7 18388000 29351000 29930 26799000 17044000 30887000 20668000 16481000 18122000 17895000 22028000 17121000 27378000 1481800 27581000 16432000 30890000 20696000 17526000 18686000 17419000 21129000 4 4 2 4 4 4 4 4 4 4 4 23887000 40245000 42223 34886000 25870000 32064000 33186000 21301000 22937000 24269000 30176000 22240000 37533000 1788000 35926000 24982000 32597000 32962000 22290000 24040000 23580000 28885000 3 3 1 3 3 3 3 3 3 3 3 7799900000 4175800000 3624100000 18682 1769 17160 94888;94889;94890;94891;94892;94893;94894;94895;94896;94897;94898;94899;94900 114901;114902;114903;114904;114905;114906;114907;114908;114909;114910 114907 10 TGEAYVQFEEPEMANQALLK Oxidation (M) 2283.0729 0.072913532 1569 Q12849;Q12849-5 GRSF1 G-rich sequence factor 1 yes no 0 0 1 0 By MS/MS By MS/MS 2.8 0.748 2 2 1 3 2 66.33 66.021 3 1.2305E-06 21428 20211116_3442_TMUAki_TMT10x_S_F4 85.087 75.923 16804000 28731000 233720 28243000 18820000 22859000 19178000 14962000 13746000 15209000 20384000 15647000 26807000 1588500 28766000 18065000 23442000 19266000 15618000 14457000 14844000 19458000 7 7 5 7 7 7 7 7 7 7 7 8737300 14595000 115430 14633000 9400800 14467000 10570000 7326500 6257000 6981200 10320000 8135900 13619000 811310 14923000 9048400 14588000 10527000 7799100 6698300 6832400 9830000 3 3 2 3 3 3 3 3 3 3 3 8066400 14136000 118290 13610000 9418800 8391200 8608600 7635100 7488600 8227800 10064000 7511400 13188000 777150 13844000 9016600 8853400 8739800 7818800 7758800 8011300 9628500 4 4 3 4 4 4 4 4 4 4 4 2361600000 1351000000 1010600000 18683 1569 17161 94901;94902;94903;94904;94905 114911;114912;114913;114914;114915;114916;114917;114918 114918 2113 8 TGEEDKKINEELESQYQQSMDSK Oxidation (M) 2731.213 0.21304842 69 O00193 SMAP Small acidic protein yes yes 0 0 1 2 By MS/MS By MS/MS 3.33 0.745 1 2 3 3 3 50.056 50.01 4 1.3697E-20 14657 20211116_3442_TMUAki_TMT10x_S_F4 142.79 130.83 3791600 7986400 8446.5 5084400 9304000 17813000 7621700 22658000 18615000 15173000 10986000 3530000 7441300 336650 5582200 8875300 17470000 8159400 22568000 18186000 15127000 10834000 5 5 1 5 5 5 5 5 5 5 5 2541000 5151600 8446.5 3168400 7377000 15722000 6678200 15103000 13371000 9972500 7074100 2365600 4799600 234560 3560100 7053000 15229000 7017700 15234000 13086000 9951100 7019100 3 3 1 3 3 3 3 3 3 3 3 1250700 2834800 0 1916000 1927000 2090300 943520 7554600 5244400 5200800 3911900 1164400 2641800 102090 2022100 1822300 2241500 1141600 7334800 5099800 5176400 3814900 2 2 0 2 2 2 2 2 2 2 2 1824100000 1028200000 795880000 18684 69 17162 94906;94907;94908;94909;94910;94911 114919;114920;114921;114922;114923 114922 36 5 TGEEIFGTIGMRPNAK Oxidation (M) 1735.8563 0.85631924 2612 Q99873;Q99873-2;Q99873-3;Q99873-5 PRMT1 Protein arginine N-methyltransferase 1 yes no 0 0 1 1 By MS/MS By MS/MS 6.25 0.661 1 4 3 4 4 48.255 48.566 3;4 3.402E-15 12814 20211116_3434_TMUAki_TMT10x_P_F6 152 127.07 33899000 58547000 159640 61425000 59528000 72683000 42971000 62057000 58690000 50254000 54460000 31564000 54642000 3172100 62629000 56662000 73111000 44940000 63278000 58869000 49567000 52667000 10 10 6 10 10 10 10 10 10 10 10 21537000 36643000 143410 38293000 48805000 62131000 33338000 38908000 35944000 31470000 33810000 20054000 34198000 2206400 39305000 46410000 61303000 34706000 40509000 36377000 31042000 32681000 6 6 4 6 6 6 6 6 6 6 6 12362000 21905000 16233 23132000 10723000 10552000 9632500 23148000 22746000 18785000 20651000 11510000 20444000 965700 23324000 10252000 11809000 10234000 22769000 22492000 18526000 19986000 4 4 2 4 4 4 4 4 4 4 4 6360500000 4018500000 2342000000 18685 2612 17163 94912;94913;94914;94915;94916;94917;94918;94919 114924;114925;114926;114927;114928;114929;114930;114931;114932;114933;114934 114924 2859 11 TGEEIFGTIGMRPNAK Unmodified 1719.8614 0.86140461 2612 Q99873;Q99873-2;Q99873-3;Q99873-5 PRMT1 Protein arginine N-methyltransferase 1 yes no 0 0 0 1 By MS/MS By MS/MS 7.57 0.495 3 4 4 3 54.638 54.932 3;4 2.1366E-35 15594 20211116_3447_TMUAki_TMT10x_S_F8 202.32 179.99 44125000 76318000 333390 79975000 61554000 58560000 48967000 76959000 66151000 57836000 66827000 41085000 71226000 3912900 81009000 58705000 61391000 50859000 76746000 66569000 57273000 64445000 9 9 6 9 9 9 9 9 9 9 9 15419000 25249000 19850 26244000 26655000 33288000 23546000 23466000 19609000 17612000 21568000 14356000 23563000 1377500 26808000 25476000 33256000 23925000 24179000 20191000 17442000 20745000 3 3 2 3 3 3 3 3 3 3 3 28706000 51069000 313540 53731000 34899000 25271000 25420000 53493000 46542000 40224000 45260000 26729000 47663000 2535400 54201000 33229000 28135000 26934000 52567000 46378000 39831000 43700000 6 6 4 6 6 6 6 6 6 6 6 4425000000 2519100000 1905900000 18686 2612 17163 94920;94921;94922;94923;94924;94925;94926 114935;114936;114937;114938;114939;114940;114941;114942;114943 114939 9 TGEGFLCVFAINNSK Unmodified 1655.7977 0.79774172 477 P01111 NRAS GTPase NRas yes yes 0 0 0 0 By MS/MS 1 0 1 1 77.064 77.064 2 0.00050054 25069 20211116_3428_TMUAki_TMT10x_P_F1 77.124 60.87 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18687 477 17164 94927 114944 114944 1 TGEMSGPVFTDSGIHIILR Oxidation (M) 2045.0252 0.025175478 1642 Q13526 PIN1 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 yes yes 0 0 1 0 By MS/MS By MS/MS 6.33 1.25 1 1 1 1 2 61.076 61.135 3 1.5329E-17 18384 20211116_3445_TMUAki_TMT10x_S_F6 141.85 107.37 4478000 7492400 41104 6794700 5162900 7270200 5152700 5417100 5170100 4971700 5970800 4169500 6988600 385370 6988100 4950400 7335400 5227700 5588000 5287400 4874000 5735000 2 2 1 2 2 2 2 2 2 2 2 2465000 3904700 0 3514200 2860600 5067200 2977300 2879800 2943400 2609500 3184300 2294900 3642100 176120 3635900 2743600 5017200 3012900 3030300 3004500 2559700 3064300 1 1 0 1 1 1 1 1 1 1 1 2013000 3587600 41104 3280400 2302200 2202900 2175400 2537300 2226700 2362200 2786500 1874600 3346500 209250 3352200 2206800 2318200 2214800 2557600 2282900 2314300 2670700 1 1 1 1 1 1 1 1 1 1 1 1478500000 557670000 920840000 18688 1642 17165 94928;94929;94930 114945;114946 114946 2209 2 TGENVEDAFLEAAK Unmodified 1492.7046 0.70455285 1295 P61106 RAB14 Ras-related protein Rab-14 yes yes 0 0 0 0 By MS/MS By MS/MS 1.4 0.49 3 2 4 1 67.388 67.216 2;3 3.4877E-20 21070 20211116_3428_TMUAki_TMT10x_P_F1 162.93 133.97 16046000 25848000 258860 24543000 18361000 27729000 20153000 18505000 18086000 17270000 21860000 14942000 24114000 1591800 25178000 17666000 27845000 20284000 19243000 18624000 16918000 20971000 5 5 4 5 5 5 5 5 5 5 5 13143000 21031000 204420 19824000 15069000 24930000 17338000 15129000 14914000 14351000 17988000 12239000 19619000 1294900 20385000 14517000 24862000 17393000 15853000 15387000 14048000 17257000 4 4 3 4 4 4 4 4 4 4 4 2903200 4817600 54446 4719200 3292400 2799100 2815200 3375900 3172400 2919200 3872300 2703600 4494900 296890 4792600 3148200 2982900 2891500 3389600 3236600 2869900 3713800 1 1 1 1 1 1 1 1 1 1 1 2019100000 1626800000 392330000 18689 1295 17166 94931;94932;94933;94934;94935 114947;114948;114949;114950;114951;114952;114953 114949 7 TGENVEDAFLEAAKK Unmodified 1620.7995 0.79951586 1295 P61106 RAB14 Ras-related protein Rab-14 yes yes 0 0 0 1 By MS/MS By MS/MS 3.6 1.02 1 1 2 1 3 2 63.331 63.178 3 2.759E-20 18901 20211116_3444_TMUAki_TMT10x_S_F5 151.48 132.66 24100000 42425000 121530 37263000 36516000 50694000 32890000 39545000 36073000 35428000 36481000 22440000 39568000 1427100 38580000 34928000 50564000 33650000 40646000 36573000 34771000 35180000 4 4 2 4 4 4 4 4 4 4 4 18189000 31864000 49193 28040000 29922000 44352000 27019000 29722000 27031000 26850000 27591000 16936000 29718000 860020 29119000 28619000 43848000 27559000 30872000 27519000 26341000 26598000 3 3 1 3 3 3 3 3 3 3 3 5911000 10561000 72340 9223600 6594200 6341800 5870600 9823000 9041600 8578600 8890500 5504200 9850000 567050 9461000 6309000 6716500 6090800 9774400 9054200 8429500 8581100 1 1 1 1 1 1 1 1 1 1 1 3611900000 2654400000 957590000 18690 1295 17167 94936;94937;94938;94939;94940 114954;114955;114956;114957;114958 114958 5 TGEYPVPLIR Unmodified 1143.6288 0.62880913 623 P11310;P11310-2 ACADM Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 2 3 52.885 53.015 2 4.7017E-06 15007 20211116_3445_TMUAki_TMT10x_S_F6 141.52 110.91 21488000 36357000 148310 38287000 26965000 27517000 21413000 23174000 24074000 21918000 28416000 20009000 33932000 1995900 38762000 25725000 28599000 22093000 23743000 24529000 21458000 27278000 6 6 5 6 6 6 6 6 6 6 6 9105900 15307000 121760 15786000 15244000 16896000 10969000 9730300 10569000 9251800 11894000 8479400 14284000 954380 16087000 14516000 16983000 11338000 10240000 10817000 9055500 11433000 2 2 2 2 2 2 2 2 2 2 2 12382000 21050000 26550 22501000 11721000 10621000 10444000 13444000 13505000 12666000 16522000 11529000 19647000 1041600 22675000 11209000 11616000 10755000 13503000 13712000 12403000 15845000 4 4 3 4 4 4 4 4 4 4 4 1606600000 727210000 879360000 18691 623 17168 94941;94942;94943;94944;94945 114959;114960;114961;114962;114963;114964 114964 6 TGFAEGFLK Unmodified 968.49673 0.49673232 2567 Q96TA2;Q96TA2-3;Q96TA2-2 YME1L1 ATP-dependent zinc metalloprotease YME1L1 yes no 0 0 0 0 By MS/MS 7 0 2 2 60.634 61.126 2 0.0020695 20336 20211116_3446_TMUAki_TMT10x_S_F7 82.645 53.496 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18692 2567 17169 94946;94947 114965;114966 114965 2 TGFAVIHDAAR Unmodified 1156.5989 0.59890598 1022 P42773 CDKN2C Cyclin-dependent kinase 4 inhibitor C yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 35.445 35.62 3 0.014877 7790 20211116_3444_TMUAki_TMT10x_S_F5 56.951 22.419 240790 389430 822.32 402110 223750 228800 212690 323800 305870 264620 360360 224200 363430 20491 406730 214310 245910 219200 322650 309030 260880 345940 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 240790 389430 822.32 402110 223750 228800 212690 323800 305870 264620 360360 224200 363430 20491 406730 214310 245910 219200 322650 309030 260880 345940 1 1 1 1 1 1 1 1 1 1 1 18958000 0 18958000 18693 1022 17170 94948;94949 114967;114968 114968 2 TGFFEFQAAK Unmodified 1144.5553 0.55530983 3064 Q9P2J5;Q9P2J5-2;Q9P2J5-3 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 2 3 63.76 64.078 2 3.2165E-07 19662 20211116_3445_TMUAki_TMT10x_S_F6 115.78 85.211 41943000 67201000 285380 70257000 52637000 62369000 46039000 50193000 50256000 48297000 55731000 39054000 62717000 3716800 71340000 50311000 63750000 47175000 51591000 51137000 47247000 53592000 5 5 3 5 5 5 5 5 5 5 5 18570000 28960000 139710 30326000 29451000 42131000 24981000 22643000 23086000 21358000 24146000 17292000 27028000 1822200 31018000 28135000 41754000 25514000 23967000 23606000 20913000 23260000 2 2 2 2 2 2 2 2 2 2 2 23373000 38241000 145670 39930000 23186000 20238000 21058000 27550000 27170000 26938000 31585000 21762000 35689000 1894600 40322000 22176000 21996000 21661000 27624000 27530000 26335000 30332000 3 3 1 3 3 3 3 3 3 3 3 4254000000 2213500000 2040500000 18694 3064 17171 94950;94951;94952;94953;94954 114969;114970;114971;114972;114973;114974 114971 6 TGFQAVTGK Unmodified 907.47633 0.47633123 738 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 41.766 41.865 2 3.1421E-05 10853 20211116_3436_TMUAki_TMT10x_P_F8 112.36 86.463 929260 1681700 12935 1758900 891170 800730 965170 1580000 1618200 1355400 1541500 865330 1569500 88564 1774600 857140 892350 995360 1560400 1615000 1333000 1489400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 929260 1681700 12935 1758900 891170 800730 965170 1580000 1618200 1355400 1541500 865330 1569500 88564 1774600 857140 892350 995360 1560400 1615000 1333000 1489400 1 1 1 1 1 1 1 1 1 1 1 32904000 0 32904000 18695 738 17172 94955;94956 114975;114976 114975 2 TGFSTSPESPYTHWK Unmodified 1723.7842 0.78420015 2612 Q99873;Q99873-2;Q99873-3;Q99873-5 PRMT1 Protein arginine N-methyltransferase 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 49.049 49.325 3 1.6515E-20 15044 20211116_3435_TMUAki_TMT10x_P_F7 178.67 161.45 5832600 10675000 25367 12887000 9832700 10903000 7915200 5908600 5726700 5692600 7290600 5430700 9969200 534490 12961000 9379500 11118000 8061300 6253100 5977200 5568600 6984600 3 3 2 3 3 3 3 3 3 3 3 3541600 6434000 1561.7 7766700 7719700 9234900 6212800 3494800 3322300 3285400 4217800 3297300 6008600 324850 7851200 7362300 9188400 6291200 3836700 3538100 3217300 4041000 2 2 1 2 2 2 2 2 2 2 2 2291100 4241000 23805 5120700 2113000 1668400 1702400 2413800 2404400 2407200 3072800 2133400 3960600 209640 5110200 2017200 1929400 1770000 2416400 2439100 2351200 2943500 1 1 1 1 1 1 1 1 1 1 1 860630000 528790000 331840000 18696 2612 17173 94957;94958;94959;94960 114977;114978;114979 114977 3 TGGAYGEDLGADYNLSQVCDGK Unmodified 2288.9856 0.98555509 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 3.6 1.02 2 2 4 2 5 5 61.78 61.684 2;3 2.0327E-68 19201 20211116_3431_TMUAki_TMT10x_P_F4 254.94 242.17 37808000 67276000 282320 69781000 35778000 44522000 32205000 34457000 34167000 33891000 44450000 35203000 62785000 3183200 70633000 34221000 46688000 32914000 35525000 35038000 33123000 42561000 15 15 7 15 15 15 15 15 15 15 15 17194000 28033000 159510 30071000 20485000 30590000 19466000 15427000 15640000 14783000 20166000 16009000 26165000 1529800 30541000 19620000 30791000 19680000 16431000 16239000 14464000 19313000 8 8 3 8 8 8 8 8 8 8 8 20614000 39243000 122810 39710000 15294000 13932000 12739000 19030000 18528000 19108000 24284000 19194000 36620000 1653400 40092000 14601000 15897000 13234000 19093000 18800000 18659000 23248000 7 7 4 7 7 7 7 7 7 7 7 9557400000 6260000000 3297400000 18697 1092 17174 94961;94962;94963;94964;94965;94966;94967;94968;94969;94970 114980;114981;114982;114983;114984;114985;114986;114987;114988;114989;114990;114991;114992;114993;114994;114995 114986 16 TGGFGAAPVFGSPPTFGGSPGFGGVPAFGSAPAFTSPLGSTGGK Unmodified 3954.9217 0.92170327 941 P35658;P35658-3;P35658-4;P35658-2;P35658-5 NUP214 Nuclear pore complex protein Nup214 yes no 0 0 0 0 By MS/MS By matching 6 0 2 1 1 80.756 80.75 5 0.024933 26032 20211116_3434_TMUAki_TMT10x_P_F6 23.761 17.74 1770400 2655500 107040 2432800 1557700 4089600 1930300 2179200 2419500 2626600 2337500 1649200 2477100 243550 2522400 1509500 4021100 1953600 2325500 2437100 2546900 2257400 1 1 1 1 1 1 1 1 1 1 1 1770400 2655500 107040 2432800 1557700 4089600 1930300 2179200 2419500 2626600 2337500 1649200 2477100 243550 2522400 1509500 4021100 1953600 2325500 2437100 2546900 2257400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1377500000 590220000 787330000 18698 941 17175 94971;94972 114996 114996 1 TGGLEIDSDFGGFR Unmodified 1469.6787 0.67867245 448 O95831;O95831-3;O95831-2;O95831-5 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 66.053 65.846 2 3.7113E-33 22628 20211116_3430_TMUAki_TMT10x_P_F3 231.17 196.91 35426000 57179000 14794 56961000 39703000 52235000 41385000 35315000 34736000 36864000 42675000 32983000 53354000 2143000 58055000 38097000 53125000 41685000 36806000 35911000 35940000 40921000 5 5 1 5 5 5 5 5 5 5 5 21108000 33246000 0 33716000 23707000 38322000 25837000 21530000 21108000 22385000 26075000 19653000 31024000 1035000 34431000 22777000 38378000 25950000 22763000 21857000 21827000 25000000 3 3 0 3 3 3 3 3 3 3 3 14317000 23934000 14794 23245000 15996000 13914000 15548000 13785000 13628000 14479000 16600000 13330000 22330000 1108000 23623000 15320000 14747000 15735000 14043000 14053000 14112000 15921000 2 2 1 2 2 2 2 2 2 2 2 4260100000 2497200000 1762900000 18699 448 17176 94973;94974;94975;94976 114997;114998;114999;115000;115001 114998 5 TGGMAFHSYFMEAIAPPLLQELKK 2 Oxidation (M) 2710.3499 0.34988044 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 2 1 By MS/MS 2 0 1 1 75.208 75.101 4 3.1143E-05 25723 20211116_3429_TMUAki_TMT10x_P_F2 67.136 53.264 12599000 23127000 113990 18962000 11128000 19100000 14130000 8470300 8884700 9442000 12952000 11732000 21564000 1130200 19640000 10752000 19210000 14014000 9177500 9412500 9181500 12368000 2 2 2 2 2 2 2 2 2 2 2 12599000 23127000 113990 18962000 11128000 19100000 14130000 8470300 8884700 9442000 12952000 11732000 21564000 1130200 19640000 10752000 19210000 14014000 9177500 9412500 9181500 12368000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2008700000 2008700000 0 18700 1092 17177 94977 115002;115003 115003 1435;1436 2 TGGPAYGPSSDVSTASETESEKREEPNR Unmodified 2937.3224 0.32241595 1149 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 0 0 0 2 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 33.94 33.709 4 1.9043E-120 8985 20211116_3429_TMUAki_TMT10x_P_F2 301.03 283.31 218780 326470 2420.1 533080 601880 497760 287670 330020 415730 223510 416150 203720 305400 24733 528710 569290 505500 312190 340820 417340 222680 401430 2 2 1 2 2 2 2 2 2 2 2 142440 215620 0 305740 555180 459930 246990 180650 219210 125650 234000 132610 201530 16563 307850 524510 452760 265780 196120 224750 124980 225270 1 1 0 1 1 1 1 1 1 1 1 76348 110850 2420.1 227340 46701 37837 40684 149370 196510 97864 182150 71106 103870 8170.1 220860 44774 52741 46406 144700 192590 97701 176160 1 1 1 1 1 1 1 1 1 1 1 88503000 66171000 22332000 18701 1149 17178 94978;94979 115004;115005 115004 2 TGGTVSDQALLFGDDDAGEGPSSLIR Unmodified 2577.2195 0.21945443 2756 Q9GZR7;Q9GZR7-2 DDX24 ATP-dependent RNA helicase DDX24 yes no 0 0 0 0 By MS/MS 2 0 1 1 75.146 75.003 3 6.8156E-06 25774 20211116_3429_TMUAki_TMT10x_P_F2 74.128 66.416 1113900 1818400 0 1722900 1086700 2630700 1465800 1764300 1867900 1797300 1603700 1037100 1696400 87310 1777900 1051200 2604500 1479500 1838500 1873300 1754000 1555200 1 1 0 1 1 1 1 1 1 1 1 1113900 1818400 0 1722900 1086700 2630700 1465800 1764300 1867900 1797300 1603700 1037100 1696400 87310 1777900 1051200 2604500 1479500 1838500 1873300 1754000 1555200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 421470000 421470000 0 18702 2756 17179 94980 115006 115006 1 TGGYLTESGYVNLQR Unmodified 1656.8107 0.81074925 2772 Q9H0D6;Q9H0D6-2 XRN2 5'-3' exoribonuclease 2 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 3 1 2 52.359 52.475 2;3 8.2271E-49 14856 20211116_3445_TMUAki_TMT10x_S_F6 251.03 226.17 6997100 11059000 439340 12977000 10522000 12965000 7878000 12061000 11313000 10625000 11778000 6518200 10326000 1038900 13103000 10049000 13189000 8235600 12265000 11375000 10436000 11348000 2 2 2 2 2 2 2 2 2 2 2 3789000 5559600 192280 6013700 6924200 9278000 4903700 7135100 6330700 5785000 5760000 3529300 5189400 537240 6151700 6600100 9202300 5123900 7322300 6357700 5705500 5574200 1 1 1 1 1 1 1 1 1 1 1 3208100 5499100 247060 6963400 3598200 3687400 2974300 4925800 4982600 4839900 6018100 2988900 5136700 501690 6951400 3449400 3986400 3111700 4943200 5017800 4730500 5773400 1 1 1 1 1 1 1 1 1 1 1 466040000 175930000 290110000 18703 2772 17180 94981;94982;94983 115007;115008;115009 115009 3 TGHSGTLDPK Unmodified 1011.4985 0.49852324 294 O60832;O60832-2 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 0 0 0 0 By MS/MS 4 0 1 1 28.195 28.239 3 0.002909 5679 20211116_3431_TMUAki_TMT10x_P_F4 71.524 50.623 211050 354640 8119 305900 264770 309730 217930 167930 178110 167870 264030 196570 330740 25816 315570 253190 312110 222280 177890 185990 163950 252040 1 1 1 1 1 1 1 1 1 1 1 211050 354640 8119 305900 264770 309730 217930 167930 178110 167870 264030 196570 330740 25816 315570 253190 312110 222280 177890 185990 163950 252040 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6164100 6164100 0 18704 294 17181 94984 115010 115010 1 TGIAAIAVHGR Unmodified 1064.6091 0.60907674 3004 Q9NX74 DUS2 tRNA-dihydrouridine(20) synthase [NAD(P)+]-like yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 3 2 1 34.329 34.324 3 1.1085E-05 9653 20211116_3439_TMUAki_TMT10x_S_F1 104.79 67.287 314300 507370 0 514690 353250 281740 367610 323460 340860 311610 392780 292640 473460 26277 521070 339050 302320 371300 326410 349780 304820 377300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 314300 507370 0 514690 353250 281740 367610 323460 340860 311610 392780 292640 473460 26277 521070 339050 302320 371300 326410 349780 304820 377300 1 1 0 1 1 1 1 1 1 1 1 36595000 18616000 17980000 18705 3004 17182 94985;94986;94987 115011;115012 115012 2 TGIDLGTTGR Unmodified 989.51417 0.5141733 1711 Q14498;Q14498-2;Q14498-3 RBM39 RNA-binding protein 39 yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 36.786 36.887 2 1.0732E-07 9425 20211116_3431_TMUAki_TMT10x_P_F4 160.16 120.24 2542800 4404800 51110 4372000 4271100 4480800 3107400 3471900 3950200 3014700 3916100 2368000 4110100 282650 4464100 4069100 4535300 3238900 3567200 3980600 2963200 3778700 4 4 4 4 4 4 4 4 4 4 4 1380200 2374100 18847 2305500 3128500 3355700 1861200 2011900 2189800 1646400 2180900 1285200 2215000 156480 2372500 2969100 3323600 1964300 2102500 2213000 1623000 2104100 1 1 1 1 1 1 1 1 1 1 1 1162600 2030700 32264 2066500 1142500 1125000 1246200 1460000 1760400 1368300 1735200 1082800 1895000 126180 2091600 1100100 1211700 1274600 1464800 1767500 1340100 1674600 3 3 3 3 3 3 3 3 3 3 3 166500000 102390000 64112000 18706 1711 17183 94988;94989;94990 115013;115014;115015;115016 115013 4 TGIEQGSDAGYLCESQK Unmodified 1841.8102 0.8101569 992 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 By MS/MS By matching 3.5 0.5 1 1 1 1 45.998 46.098 3 3.3838E-30 14358 20211116_3430_TMUAki_TMT10x_P_F3 197.15 187.09 1133000 1695000 25190 2735800 4778200 3162200 1787200 1600900 1939000 1115000 1889600 1055100 1585500 160780 2723900 4507400 3160100 1973900 1691900 1964200 1109000 1824400 2 2 1 2 2 2 2 2 2 2 2 1133000 1695000 25190 2735800 4778200 3162200 1787200 1600900 1939000 1115000 1889600 1055100 1585500 160780 2723900 4507400 3160100 1973900 1691900 1964200 1109000 1824400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 158760000 106160000 52602000 18707 992 17184 94991;94992 115017;115018 115017 2 TGIGGMLR Unmodified 803.43236 0.43235793 3370 yes yes 0 0 0 0 By MS/MS 8 0 2 2 39.63 39.865 2 0.0013177 9994 20211116_3436_TMUAki_TMT10x_P_F8 124.12 1.6219 + 4087400 5952900 25821 6638200 10006000 6012400 5163400 2723100 2080500 2268100 4929800 3806000 5557300 445830 6714300 9474100 6089700 5395200 2921100 2352500 2233800 4667400 2 2 2 2 2 2 2 2 2 2 2 4087400 5952900 25821 6638200 10006000 6012400 5163400 2723100 2080500 2268100 4929800 3806000 5557300 445830 6714300 9474100 6089700 5395200 2921100 2352500 2233800 4667400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 206510000 206510000 0 18708 3370 17185 94993;94994 115019 115019 1 TGIIVTTSEAVLLQLVADKDHPK Unmodified 2447.3635 0.36353989 2424 Q96CN7 ISOC1 Isochorismatase domain-containing protein 1 yes yes 0 0 0 1 By MS/MS 1 0 1 1 79.379 79.342 4 2.2933E-15 27995 20211116_3439_TMUAki_TMT10x_S_F1 131.65 115.32 1033600 2011700 2423.2 2092400 1488800 1294600 1513100 1097700 1038700 1153500 1535100 962400 1877500 94327 2117000 1428300 1363700 1518900 1127700 1095000 1124200 1465500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1033600 2011700 2423.2 2092400 1488800 1294600 1513100 1097700 1038700 1153500 1535100 962400 1877500 94327 2117000 1428300 1363700 1518900 1127700 1095000 1124200 1465500 1 1 1 1 1 1 1 1 1 1 1 320450000 0 320450000 18709 2424 17186 94995 115020 115020 1 TGISDVFAK Unmodified 936.49165 0.49164694 729 P19338 NCL Nucleolin yes yes 0 0 0 0 By MS/MS By MS/MS 6 1.22 1 2 2 2 1 4 4 54.665 54.938 2 0.00027606 17315 20211116_3435_TMUAki_TMT10x_P_F7 130.96 68.763 214610000 321060000 1150500 402210000 431920000 362690000 236440000 282100000 301880000 228920000 304920000 199830000 299890000 21803000 404000000 409300000 370110000 252080000 289300000 304360000 225760000 294050000 11 11 8 11 11 11 11 11 11 11 11 127210000 187820000 893740 234000000 356080000 296420000 159460000 164920000 181590000 141080000 179040000 118450000 175430000 14561000 236390000 336540000 295170000 172710000 173600000 183680000 138770000 172790000 7 7 5 7 7 7 7 7 7 7 7 87396000 133240000 256800 168220000 75837000 66267000 76981000 117190000 120300000 87835000 125880000 81376000 124460000 7242500 167620000 72755000 74942000 79366000 115700000 120680000 86994000 121260000 4 4 3 4 4 4 4 4 4 4 4 11319000000 6516600000 4802900000 18710 729 17187 94996;94997;94998;94999;95000;95001;95002;95003 115021;115022;115023;115024;115025;115026;115027;115028;115029;115030;115031;115032 115026 12 TGISDVFAKNDLAVVDVR Unmodified 1918.016 0.015991 729 P19338 NCL Nucleolin yes yes 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 67.744 67.937 3 5.9531E-18 22677 20211116_3435_TMUAki_TMT10x_P_F7 157.62 138.54 15620000 30241000 60322 19727000 35151000 34755000 20615000 55896000 47283000 38583000 33560000 14542000 28179000 1371200 21092000 33326000 34954000 22496000 55246000 46449000 38396000 32799000 6 6 3 6 6 6 6 6 6 6 6 4839300 9432200 21275 6480100 6988200 17133000 8423400 18857000 15957000 12827000 10727000 4506000 8790200 451130 6978600 6738000 16836000 8702400 18905000 15718000 12776000 10509000 2 2 2 2 2 2 2 2 2 2 2 10780000 20809000 39047 13247000 28163000 17622000 12191000 37040000 31327000 25757000 22834000 10036000 19388000 920040 14114000 26588000 18118000 13794000 36342000 30731000 25620000 22290000 4 4 1 4 4 4 4 4 4 4 4 2888200000 1422000000 1466300000 18711 729 17188 95004;95005;95006;95007 115033;115034;115035;115036;115037;115038 115034 6 TGISLNIPAPQPVCISEK Unmodified 1923.0135 0.013548159 1976 Q6GYQ0;Q6GYQ0-2;Q6GYQ0-4;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 yes no 0 0 0 0 By MS/MS 8 0 1 1 70.273 70.354 3 0.080863 22453 20211116_3436_TMUAki_TMT10x_P_F8 28.617 13.23 4554800 8504400 22556 7267000 6216200 12217000 7106900 6204400 6417900 6620800 6359500 4241200 7930900 421920 7574900 5984100 12005000 7140900 6624100 6557200 6449000 6136600 1 1 1 1 1 1 1 1 1 1 1 4554800 8504400 22556 7267000 6216200 12217000 7106900 6204400 6417900 6620800 6359500 4241200 7930900 421920 7574900 5984100 12005000 7140900 6624100 6557200 6449000 6136600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 651460000 651460000 0 18712 1976 17189 95008 115039 115039 1 TGIVDISILTTGMSATSR Oxidation (M) 1837.9455 0.94552817 911 P33991 MCM4 DNA replication licensing factor MCM4 yes yes 0 0 1 0 By MS/MS 8 0 1 1 70.974 70.801 3 0.0025741 22106 20211116_3447_TMUAki_TMT10x_S_F8 62.617 44.021 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18713 911 17190 95009 115040 115040 1127 1 TGKPFNPLLGETYELVR Unmodified 1933.0309 0.030912783 2718 Q9BXW6;Q9BXW6-2;Q9BXW6-4 OSBPL1A Oxysterol-binding protein-related protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 67.012 67.151 3 0.00013608 20601 20211116_3447_TMUAki_TMT10x_S_F8 77.391 55.834 4369800 7266600 0 6216700 4745800 7996300 5410200 4645100 3910300 4603300 5525400 4068700 6776600 361680 6442900 4566800 7961000 5406600 4890700 4101000 4497500 5280100 1 1 0 1 1 1 1 1 1 1 1 4369800 7266600 0 6216700 4745800 7996300 5410200 4645100 3910300 4603300 5525400 4068700 6776600 361680 6442900 4566800 7961000 5406600 4890700 4101000 4497500 5280100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 304910000 304910000 0 18714 2718 17191 95010;95011 115041;115042 115042 2 TGKVDNIQAGELTEGIWR Unmodified 1986.0171 0.017053633 1550 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 0 1 By MS/MS By MS/MS 6 0.816 1 1 1 2 1 59.436 59.732 3 4.7091E-31 17392 20211116_3434_TMUAki_TMT10x_P_F6 182.22 163.43 32663000 56111000 52034 58648000 53039000 49316000 53235000 17512000 14803000 21609000 38762000 30412000 52367000 2848700 59512000 50852000 50101000 52799000 19533000 17592000 20935000 36650000 4 4 2 4 4 4 4 4 4 4 4 24794000 42550000 5159.5 43967000 44734000 43381000 45385000 12469000 10465000 15989000 29190000 23084000 39709000 2146500 44745000 42897000 43535000 44921000 14343000 12839000 15471000 27579000 3 3 1 3 3 3 3 3 3 3 3 7869300 13561000 46874 14681000 8305400 5935300 7850100 5043400 4338000 5619600 9571800 7327500 12658000 702210 14767000 7955000 6565900 7877700 5190000 4752600 5464700 9071500 1 1 1 1 1 1 1 1 1 1 1 3809200000 3238200000 571060000 18715 1550 17192 95012;95013;95014 115043;115044;115045;115046 115043 4 TGLAVTVGQAK Unmodified 1043.5975 0.597509 1632 Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;Q13428-6;Q13428-7;Q13428-5 TCOF1 Treacle protein yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 43.779 44.012 2;3 8.9975E-15 11166 20211116_3447_TMUAki_TMT10x_S_F8 166.55 124.57 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18716 1632 17193 95015;95016;95017 115047;115048;115049 115049 3 TGLIDYNQLALTAR Unmodified 1547.8308 0.83075641 915 P34897;P34897-3 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 2 4 4 5 5 65.116 65.343 2;3 1.8443E-60 20302 20211116_3436_TMUAki_TMT10x_P_F8 305.71 272.48 46465000 79469000 192700 72672000 63151000 76147000 57594000 53678000 50084000 51857000 62603000 43261000 74128000 3755500 74670000 60391000 76855000 58478000 55655000 51725000 50721000 60003000 8 8 3 8 8 8 8 8 8 8 8 23179000 38744000 174510 35890000 28744000 48823000 29429000 26874000 25034000 25770000 30719000 21581000 36141000 1890700 37008000 27571000 48446000 29679000 28398000 25862000 25214000 29458000 4 4 2 4 4 4 4 4 4 4 4 23287000 40725000 18189 36782000 34407000 27325000 28165000 26804000 25049000 26087000 31883000 21680000 37986000 1864800 37661000 32820000 28408000 28799000 27257000 25862000 25507000 30545000 4 4 1 4 4 4 4 4 4 4 4 20671000000 10232000000 10439000000 18717 915 17194 95018;95019;95020;95021;95022;95023;95024;95025;95026;95027 115050;115051;115052;115053;115054;115055;115056;115057 115052 8 TGLIIGK Unmodified 700.44833 0.44832557 2408;2407 Q96AE4-2;Q96AE4 FUBP1 Far upstream element-binding protein 1 no no 0 0 0 0 By MS/MS By MS/MS 5 3.29 2 1 2 2 3 48.767 48.681 2 0.011799 13469 20211116_3428_TMUAki_TMT10x_P_F1 94.407 10.793 24603000 36922000 53118 37112000 32220000 32216000 27523000 29093000 28866000 27287000 31931000 22907000 34453000 2074000 37774000 30771000 33052000 28205000 29684000 29416000 26725000 30708000 3 3 2 3 3 3 3 3 3 3 3 9241200 14020000 10994 13907000 16242000 19585000 12234000 10889000 11168000 10454000 12494000 8604600 13082000 874450 14280000 15473000 19406000 12586000 11497000 11455000 10228000 12012000 1 1 1 1 1 1 1 1 1 1 1 15362000 22901000 42124 23205000 15978000 12632000 15289000 18204000 17697000 16833000 19436000 14303000 21371000 1199500 23493000 15298000 13646000 15619000 18186000 17960000 16497000 18696000 2 2 1 2 2 2 2 2 2 2 2 1652500000 518230000 1134200000 18718 2408;2407 17195 95028;95029;95030;95031;95032 115058;115059;115060;115061;115062 115058 5 TGLITPK Unmodified 728.44324 0.44324019 1183 P52701;P52701-3;P52701-4;P52701-2 MSH6 DNA mismatch repair protein Msh6 yes no 0 0 0 0 By MS/MS 7 0 1 1 39.757 40.389 2 0.04617 11903 20211116_3446_TMUAki_TMT10x_S_F7 67.032 17.674 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18719 1183 17196 95033 115063 115063 1 TGLLSFEESQR Unmodified 1265.6252 0.62518031 2767 Q9H089 LSG1 Large subunit GTPase 1 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 52.717 52.796 2 2.1795E-14 15531 20211116_3431_TMUAki_TMT10x_P_F4 160.53 139.08 3352100 5754800 64773 6505300 3470900 2943900 2800900 5304100 4900200 4547300 4916200 3121500 5372600 331270 6530200 3314500 3271800 2941100 5251100 4893800 4472300 4742000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3352100 5754800 64773 6505300 3470900 2943900 2800900 5304100 4900200 4547300 4916200 3121500 5372600 331270 6530200 3314500 3271800 2941100 5251100 4893800 4472300 4742000 2 2 1 2 2 2 2 2 2 2 2 205370000 0 205370000 18720 2767 17197 95034;95035;95036 115064;115065;115066;115067 115065 4 TGLVEFAR Unmodified 891.48142 0.48141661 892 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 45.793 45.937 2 0.0010765 11853 20211116_3444_TMUAki_TMT10x_S_F5 128.61 88.509 21750000 32772000 6029.2 39703000 33907000 31699000 23622000 24017000 25837000 22642000 29006000 20250000 30606000 1860100 39894000 32245000 32614000 24567000 24765000 26300000 22170000 27883000 6 6 2 6 6 6 6 6 6 6 6 11353000 17171000 673.63 20863000 26364000 23972000 14962000 12353000 13895000 12360000 15253000 10570000 16036000 1082200 21069000 24988000 23968000 15739000 13146000 14231000 12071000 14672000 3 3 1 3 3 3 3 3 3 3 3 10397000 15602000 5355.5 18840000 7542800 7727000 8660400 11664000 11942000 10282000 13752000 9680100 14570000 777910 18825000 7257600 8645700 8827800 11619000 12069000 10099000 13210000 3 3 1 3 3 3 3 3 3 3 3 1814500000 1094800000 719720000 18721 892 17198 95037;95038;95039;95040;95041;95042 115068;115069;115070;115071;115072;115073 115072 6 TGMILLAGEITSR Unmodified 1360.7384 0.73843593 885 P31153 MAT2A S-adenosylmethionine synthase isoform type-2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.2 3.43 2 3 2 3 70.101 70.037 2 2.5388E-22 24221 20211116_3439_TMUAki_TMT10x_S_F1 200.66 153.76 26856000 43754000 53466 39453000 30138000 34254000 32286000 18327000 15002000 20396000 31370000 25004000 40811000 2119600 40475000 28942000 34859000 32101000 19499000 16599000 19834000 29755000 7 7 2 7 7 7 7 7 7 7 7 16448000 25812000 0 23567000 17262000 24556000 19304000 10249000 8441600 11858000 19039000 15314000 24077000 1177900 24215000 16590000 24633000 19138000 11191000 9439200 11515000 18038000 4 4 0 4 4 4 4 4 4 4 4 10407000 17943000 53466 15887000 12876000 9698600 12982000 8077100 6560200 8537800 12331000 9690600 16735000 941640 16260000 12351000 10226000 12964000 8307900 7159700 8319500 11717000 3 3 2 3 3 3 3 3 3 3 3 2544500000 1250900000 1293500000 18722 885 17199 95043;95044;95045;95046;95047 115074;115075;115076;115077;115078;115079;115080;115081 115078 8 TGMILLAGEITSR Oxidation (M) 1376.7334 0.73335055 885 P31153 MAT2A S-adenosylmethionine synthase isoform type-2 yes yes 0 0 1 0 By MS/MS By MS/MS 6.43 0.495 4 3 3 4 55.318 55.62 2;3 4.9057E-08 18140 20211116_3446_TMUAki_TMT10x_S_F7 117.09 90.706 8787000 15301000 144020 14435000 12619000 19316000 11659000 16769000 16585000 14476000 14179000 8182600 14274000 916390 14860000 12084000 19319000 12029000 17109000 16572000 14233000 13752000 3 3 3 3 3 3 3 3 3 3 3 6083600 10111000 51075 9968200 9082400 15620000 8423500 10948000 10870000 9509500 9438500 5664800 9434100 593970 10264000 8695100 15459000 8654600 11324000 10901000 9346800 9149300 2 2 2 2 2 2 2 2 2 2 2 2703400 5189700 92943 4466300 3536800 3695600 3235700 5820700 5714600 4966600 4740100 2517800 4839800 322420 4595900 3389300 3860100 3374600 5785300 5670500 4885800 4602800 1 1 1 1 1 1 1 1 1 1 1 1484200000 911520000 572710000 18723 885 17199 95048;95049;95050;95051;95052;95053;95054 115082;115083;115084;115085;115086;115087;115088 115088 1070 7 TGNFQVTELGR Unmodified 1220.6149 0.61494998 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 45.915 46.088 2 7.6587E-15 13086 20211116_3433_TMUAki_TMT10x_P_F5 169.21 131.07 5138900 8534300 40125 10968000 4157500 3900900 3549900 10852000 11479000 8257000 9947500 4785000 7972500 439440 10912000 3972900 4566100 3878100 10606000 11277000 8171200 9643400 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5138900 8534300 40125 10968000 4157500 3900900 3549900 10852000 11479000 8257000 9947500 4785000 7972500 439440 10912000 3972900 4566100 3878100 10606000 11277000 8171200 9643400 3 3 2 3 3 3 3 3 3 3 3 398560000 0 398560000 18724 352 17200 95055;95056;95057;95058;95059;95060 115089;115090;115091;115092;115093;115094 115090 6 TGNQHFGYLYGR Unmodified 1411.6633 0.66329715 2264 Q8TAT6;Q8TAT6-2 NPLOC4 Nuclear protein localization protein 4 homolog yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 36.791 36.762 3 1.8289E-07 10623 20211116_3439_TMUAki_TMT10x_S_F1 128.1 116.66 900410 1431000 17908 1647200 1853600 1598000 1067500 1478100 1604200 1145600 1571800 838510 1336100 104690 1664400 1758600 1628200 1140500 1498900 1607300 1132600 1517200 2 2 2 2 2 2 2 2 2 2 2 498720 788940 16244 912240 1507000 1292000 703650 806570 875420 617350 893720 464480 736630 70608 927600 1425700 1281900 761070 838900 883720 610730 861570 1 1 1 1 1 1 1 1 1 1 1 401690 642050 1663.4 734970 346620 305950 363840 671530 728730 528300 678040 374030 599450 34082 736810 332890 346360 379460 660030 723590 521860 655650 1 1 1 1 1 1 1 1 1 1 1 177120000 118550000 58569000 18725 2264 17201 95061;95062 115095;115096 115096 2 TGPNLHGLFGR Unmodified 1167.6149 0.6148904 1463 P99999;CON__P62894 CYCS Cytochrome c yes no 0 0 0 0 By MS/MS By MS/MS 3 2.45 3 4 2 2 6 5 45.075 44.983 2;3 1.8845E-11 15060 20211116_3441_TMUAki_TMT10x_S_F3 168.69 125.19 11527000 18401000 73104 22269000 21288000 24046000 14612000 19006000 18783000 16790000 18415000 10733000 17184000 1099100 22471000 20245000 24273000 15300000 19512000 18913000 16489000 17776000 10 10 5 10 10 10 10 10 10 10 10 6914800 10766000 3920.6 13144000 16907000 19480000 10314000 11784000 11561000 10225000 11004000 6437900 10054000 658580 13335000 16042000 19281000 10845000 12323000 11687000 10051000 10632000 5 5 1 5 5 5 5 5 5 5 5 4612400 7635100 69183 9125200 4380800 4566100 4298200 7222800 7222500 6564300 7411200 4295100 7130000 440570 9135800 4202500 4992600 4454700 7189800 7226300 6438200 7143500 5 5 4 5 5 5 5 5 5 5 5 6738000000 4412900000 2325100000 18726 1463 17202 95063;95064;95065;95066;95067;95068;95069;95070;95071;95072;95073 115097;115098;115099;115100;115101;115102;115103;115104;115105;115106 115105 10 TGPNLHGLFGRK Unmodified 1295.7099 0.70985342 1463 P99999;CON__P62894 CYCS Cytochrome c yes no 0 0 0 1 By MS/MS By MS/MS 3.86 0.99 1 1 3 2 4 3 39.77 39.754 3;4 3.0649E-07 9421 20211116_3444_TMUAki_TMT10x_S_F5 121.58 88.197 18447000 29266000 334700 36491000 46539000 39671000 22791000 37749000 34772000 28207000 32054000 17179000 27335000 2227200 36764000 44046000 40175000 24731000 38192000 34754000 27942000 31005000 8 8 7 8 8 8 8 8 8 8 8 10741000 16136000 123110 19873000 37824000 33314000 15898000 21513000 20195000 15784000 17652000 10002000 15070000 1376900 20210000 35723000 32844000 17406000 22297000 20267000 15651000 17107000 4 4 3 4 4 4 4 4 4 4 4 7706500 13130000 211590 16618000 8715000 6357100 6892600 16236000 14577000 12424000 14402000 7177100 12265000 850240 16553000 8323400 7331100 7324700 15895000 14488000 12291000 13898000 4 4 4 4 4 4 4 4 4 4 4 1960000000 1433800000 526200000 18727 1463 17203 95074;95075;95076;95077;95078;95079;95080 115107;115108;115109;115110;115111;115112;115113;115114 115114 8 TGPPLVGPK Unmodified 864.5069 0.50690308 198 O43159 RRP8 Ribosomal RNA-processing protein 8 yes yes 0 0 0 0 By MS/MS 7 0 1 1 40.139 40.771 2 3.1151E-05 12054 20211116_3446_TMUAki_TMT10x_S_F7 111.04 85.865 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18728 198 17204 95081 115115 115115 1 TGQAAELGGLLKYVRPFLNSISK Unmodified 2461.3693 0.36929397 73 O00231;O00231-2 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 0 0 0 2 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 79.488 79.504 4 1.516E-15 25602 20211116_3447_TMUAki_TMT10x_S_F8 136.16 121.7 13393000 20459000 102220 17213000 12959000 17518000 14084000 9251500 7896400 10427000 12421000 12471000 19078000 1199500 17794000 12460000 17641000 14035000 9858700 8464500 10135000 11842000 2 2 2 2 2 2 2 2 2 2 2 8883100 13417000 7322.1 11682000 7679100 13745000 8887600 6344600 5405500 7303800 8412300 8271100 12513000 726430 12071000 7393900 13709000 8844100 6853000 5758300 7093700 8022000 1 1 1 1 1 1 1 1 1 1 1 4509900 7041400 94893 5530900 5279400 3772200 5196100 2906900 2490800 3123100 4009100 4199900 6564700 473120 5722800 5065800 3931900 5191300 3005700 2706300 3041300 3820400 1 1 1 1 1 1 1 1 1 1 1 3213500000 932010000 2281500000 18729 73 17205 95082;95083;95084 115116;115117 115117 2 TGQALLTHLYQSSAR Unmodified 1644.8584 0.85836815 1717 Q14576-2;Q14576 ELAVL3 ELAV-like protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 49.653 49.466 3 6.3362E-07 16965 20211116_3441_TMUAki_TMT10x_S_F3 113.66 94.079 18223000 30020000 479440 32444000 18504000 22589000 17189000 24202000 25548000 23450000 24408000 16971000 28021000 1961600 32779000 17739000 23656000 17763000 24503000 25584000 22934000 23580000 4 4 4 4 4 4 4 4 4 4 4 5706100 8496500 215730 9537300 8356700 10993000 6487300 5734500 5809900 5864000 7524700 5314500 7932000 711250 9677900 7978900 10991000 6657100 6099600 6001100 5721800 7205800 1 1 1 1 1 1 1 1 1 1 1 12517000 21523000 263710 22906000 10147000 11596000 10701000 18467000 19738000 17586000 16883000 11657000 20089000 1250300 23101000 9759600 12666000 11106000 18403000 19583000 17212000 16375000 3 3 3 3 3 3 3 3 3 3 3 759480000 347580000 411900000 18730 1717 17206 95085;95086;95087;95088 115118;115119;115120;115121;115122 115122 5 TGQATVASGIPAGWMGLDCGPESSK Oxidation (M) 2492.1312 0.13117347 473 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 1 0 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 63.72 63.727 3 5.6776E-08 19098 20211116_3434_TMUAki_TMT10x_P_F6 91.175 74.491 1516300 2595500 21063 2618500 1968100 2936400 1992400 1529900 1442500 1464300 1997900 1412000 2421900 151670 2674400 1889000 2940200 2002700 1624500 1511300 1432800 1910100 1 1 1 1 1 1 1 1 1 1 1 1516300 2595500 21063 2618500 1968100 2936400 1992400 1529900 1442500 1464300 1997900 1412000 2421900 151670 2674400 1889000 2940200 2002700 1624500 1511300 1432800 1910100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 899330000 899330000 0 18731 473 17207 95089;95090 115123;115124 115123 369 2 TGQATVASGIPAGWMGLDCGPESSK Unmodified 2476.1363 0.13625884 473 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 71.318 71.637 3 1.168E-11 24742 20211116_3446_TMUAki_TMT10x_S_F7 108.44 92.548 2240100 3499700 0 3880300 2112600 1732100 2370000 1561200 1132900 1192500 2477700 2085500 3267000 159850 3899500 2030500 1893200 2352300 1584900 1254400 1179900 2348500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2240100 3499700 0 3880300 2112600 1732100 2370000 1561200 1132900 1192500 2477700 2085500 3267000 159850 3899500 2030500 1893200 2352300 1584900 1254400 1179900 2348500 1 1 0 1 1 1 1 1 1 1 1 2146300000 1109000000 1037400000 18732 473 17207 95091;95092;95093 115125;115126 115126 2 TGQATVASGIPAGWMGLDCGPESSKK Oxidation (M) 2620.2261 0.22613648 473 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 1 1 By MS/MS By MS/MS 7.17 0.687 1 3 2 4 2 56.842 57.204 3;4 1.7568E-12 18220 20211116_3435_TMUAki_TMT10x_P_F7 114.74 101.55 27424000 49334000 99259 44441000 36630000 49336000 33863000 34183000 31547000 35984000 36136000 25534000 46016000 1860300 45756000 35053000 49618000 34422000 35574000 32358000 35069000 34717000 8 8 4 8 8 8 8 8 8 8 8 14069000 24863000 99259 23394000 23664000 35406000 22128000 16248000 15162000 16154000 19084000 13100000 23194000 1306700 24149000 22652000 34898000 22310000 17484000 15869000 15780000 18289000 5 5 4 5 5 5 5 5 5 5 5 13355000 24471000 0 21047000 12967000 13930000 11735000 17935000 16386000 19830000 17052000 12434000 22822000 553640 21607000 12401000 14720000 12112000 18089000 16490000 19289000 16428000 3 3 0 3 3 3 3 3 3 3 3 13891000000 8667200000 5223700000 18733 473 17208 95094;95095;95096;95097;95098;95099 115127;115128;115129;115130;115131;115132;115133;115134 115130 369 8 TGQATVASGIPAGWMGLDCGPESSKK Unmodified 2604.2312 0.23122186 473 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 1 By MS/MS By MS/MS 7.57 0.495 3 4 4 3 63.014 63.377 3;4 8.8365E-24 19004 20211116_3447_TMUAki_TMT10x_S_F8 153.17 128.71 16433000 28001000 88760 26805000 23491000 27347000 26183000 13179000 12119000 13568000 20121000 15300000 26124000 995990 27438000 22586000 27508000 25982000 14126000 13228000 13236000 19162000 5 5 2 5 5 5 5 5 5 5 5 12821000 21542000 88760 20570000 19164000 23680000 22335000 9597300 8206400 10099000 15269000 11938000 20097000 831480 21100000 18459000 23615000 22052000 10484000 9217500 9842300 14511000 4 4 2 4 4 4 4 4 4 4 4 3612400 6459400 0 6235400 4326700 3667500 3848200 3581200 3912500 3469700 4851900 3362300 6026400 164510 6338500 4127200 3892700 3930400 3642200 4010800 3393300 4651400 1 1 0 1 1 1 1 1 1 1 1 6821800000 4469200000 2352600000 18734 473 17208 95100;95101;95102;95103;95104;95105;95106 115135;115136;115137;115138;115139;115140 115139 6 TGQEVVFVAEPDNK Unmodified 1531.7518 0.75183739 495 P04844;P04844-2 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.17 0.687 1 3 2 4 2 51.984 51.817 2;3 1.117E-19 16828 20211116_3430_TMUAki_TMT10x_P_F3 158.58 122.93 27802000 43953000 81762 47183000 36750000 40498000 30564000 37701000 39165000 33398000 38780000 25884000 41025000 2202500 47806000 35067000 41606000 31592000 38344000 39454000 32795000 37422000 4 4 2 4 4 4 4 4 4 4 4 10228000 15592000 16107 17148000 19935000 24707000 13822000 13880000 15033000 13960000 14726000 9522200 14555000 888250 17497000 18955000 24460000 14377000 14661000 15230000 13631000 14215000 2 2 1 2 2 2 2 2 2 2 2 17574000 28361000 65655 30034000 16815000 15791000 16742000 23821000 24132000 19438000 24054000 16362000 26470000 1314200 30309000 16112000 17146000 17215000 23683000 24224000 19165000 23206000 2 2 1 2 2 2 2 2 2 2 2 1482400000 670700000 811670000 18735 495 17209 95107;95108;95109;95110;95111;95112 115141;115142;115143;115144;115145 115142 5 TGQEYKPGNPPAEIGQNISSNSSASILESK Unmodified 3102.5106 0.51055107 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 1 By MS/MS By MS/MS 6 0.894 2 1 2 3 2 57.512 57.842 4 4.3233E-06 16642 20211116_3434_TMUAki_TMT10x_P_F6 65.69 58.123 18462000 34083000 138120 29919000 26179000 54769000 24951000 48973000 51907000 48004000 33835000 17191000 31787000 1765900 31188000 25079000 54132000 26207000 50055000 50985000 46923000 33199000 7 7 6 7 7 7 7 7 7 7 7 13921000 24524000 97945 22075000 20769000 47070000 20537000 35486000 37646000 34836000 24745000 12963000 22874000 1339800 23067000 19914000 46149000 21373000 36645000 37092000 34050000 24270000 5 5 4 5 5 5 5 5 5 5 5 4541100 9559000 40173 7844300 5410400 7698800 4414300 13486000 14261000 13168000 9090400 4228500 8913100 426100 8121400 5165100 7982000 4834500 13410000 13894000 12873000 8929300 2 2 2 2 2 2 2 2 2 2 2 5700400000 4148100000 1552300000 18736 542 17210 95113;95114;95115;95116;95117 115146;115147;115148;115149 115146 4 TGQPMIHIYLDK Oxidation (M) 1430.7228 0.72278587 1489 Q01844;Q01844-6;Q01844-3;Q01844-5;Q01844-2 EWSR1 RNA-binding protein EWS yes no 0 0 1 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 48.654 48.994 3 0.0011068 15427 20211116_3446_TMUAki_TMT10x_S_F7 75.462 55.453 43345000 68031000 275820 81961000 63168000 64728000 44507000 52433000 55992000 50738000 58586000 40359000 63532000 4018100 82372000 60109000 66727000 46477000 53880000 56551000 49623000 56435000 9 9 5 9 9 9 9 9 9 9 9 19669000 30582000 132660 37498000 40361000 44298000 23292000 22965000 24558000 22994000 25316000 18315000 28562000 1999100 37867000 38276000 44229000 24558000 24427000 24955000 22456000 24398000 4 4 3 4 4 4 4 4 4 4 4 23675000 37449000 143160 44463000 22807000 20430000 21215000 29468000 31434000 27744000 33270000 22045000 34970000 2019000 44505000 21832000 22498000 21918000 29453000 31597000 27167000 32037000 5 5 2 5 5 5 5 5 5 5 5 3236700000 1578100000 1658600000 18737 1489 17211 95118;95119;95120;95121 115150;115151;115152;115153;115154;115155;115156;115157;115158 115156 2024 9 TGQPMIHIYLDK Unmodified 1414.7279 0.72787125 1489 Q01844;Q01844-6;Q01844-3;Q01844-5;Q01844-2 EWSR1 RNA-binding protein EWS yes no 0 0 0 0 By MS/MS By MS/MS 7.75 0.433 1 3 1 3 53.543 54.056 3 0.00016806 17457 20211116_3446_TMUAki_TMT10x_S_F7 86.944 67.813 14627000 23986000 205640 30441000 15898000 9458100 12315000 13831000 11723000 13230000 18583000 13621000 22405000 1422100 30285000 15166000 11028000 12660000 13824000 12195000 12946000 17714000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14627000 23986000 205640 30441000 15898000 9458100 12315000 13831000 11723000 13230000 18583000 13621000 22405000 1422100 30285000 15166000 11028000 12660000 13824000 12195000 12946000 17714000 2 2 2 2 2 2 2 2 2 2 2 697400000 0 697400000 18738 1489 17211 95122;95123;95124;95125 115159;115160;115161;115162;115163 115160 5 TGQPMIHIYLDKETGKPK Oxidation (M) 2071.0772 0.077211049 1489 Q01844;Q01844-6;Q01844-3;Q01844-5;Q01844-2 EWSR1 RNA-binding protein EWS yes no 0 0 1 2 By MS/MS By MS/MS 6 2.92 1 1 2 2 2 44.319 44.424 5 0.00029392 13753 20211116_3439_TMUAki_TMT10x_S_F1 69.763 54.509 4286500 7578000 34485 6736700 6777100 7917200 5541400 9816300 9293700 7756200 8341000 3991400 7068000 417400 6949600 6468900 8035300 5801700 9823000 9256800 7660000 8075700 3 3 2 3 3 3 3 3 3 3 3 1324000 2094400 13638 1777700 2927000 3685400 2020900 3017400 2611100 2239300 2839100 1232800 1953100 144930 1864500 2784600 3621700 2115500 3078300 2638600 2219100 2731700 1 1 1 1 1 1 1 1 1 1 1 2962500 5483600 20848 4959000 3850200 4231800 3520600 6798900 6682600 5516900 5501900 2758500 5114800 272470 5085100 3684400 4413600 3686200 6744700 6618200 5440900 5344000 2 2 1 2 2 2 2 2 2 2 2 1053500000 601380000 452110000 18739 1489 17212 95126;95127;95128;95129 115164;115165;115166 115165 2024 3 TGQPMINLYTDR Unmodified 1407.6816 0.68164933 940 P35637;P35637-2 FUS RNA-binding protein FUS yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 51.242 51.384 2 3.8625E-05 14397 20211116_3445_TMUAki_TMT10x_S_F6 101.39 74.084 4596100 8067900 68065 8957000 4130400 4232600 3894800 5800100 5524100 5820500 6593500 4279900 7531500 437960 9004100 3958700 4638500 4013400 5818700 5586400 5683700 6327400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4596100 8067900 68065 8957000 4130400 4232600 3894800 5800100 5524100 5820500 6593500 4279900 7531500 437960 9004100 3958700 4638500 4013400 5818700 5586400 5683700 6327400 2 2 2 2 2 2 2 2 2 2 2 400610000 0 400610000 18740 940 17213 95130;95131 115167;115168;115169 115168 3 TGQPMINLYTDR Oxidation (M) 1423.6766 0.67656396 940 P35637;P35637-2 FUS RNA-binding protein FUS yes no 0 0 1 0 By MS/MS 5 0 1 1 43.971 44.11 2 0.00012229 11151 20211116_3444_TMUAki_TMT10x_S_F5 89.032 68.332 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18741 940 17213 95132 115170 115170 1201 1 TGQPMINLYTDRETGK Oxidation (M) 1838.8833 0.88326227 940 P35637;P35637-2 FUS RNA-binding protein FUS yes no 0 0 1 1 By MS/MS By MS/MS 5.33 1.15 3 2 2 2 5 4 41.705 41.921 3 9.2903E-08 12677 20211116_3446_TMUAki_TMT10x_S_F7 117.18 101.65 28039000 44383000 565570 61983000 63252000 58114000 35052000 59361000 72751000 44570000 53131000 26108000 41480000 2928200 61932000 59947000 59469000 38197000 59848000 71665000 44139000 51861000 16 16 10 16 16 16 16 16 16 16 16 14958000 23072000 334500 31878000 51958000 48353000 26212000 30149000 35850000 22815000 26697000 13928000 21562000 1861500 32145000 49179000 47834000 28233000 31353000 35725000 22585000 26037000 9 9 7 9 9 9 9 9 9 9 9 13082000 21311000 231080 30105000 11294000 9760200 8840200 29212000 36901000 21755000 26434000 12180000 19918000 1066700 29787000 10768000 11635000 9963900 28496000 35941000 21554000 25824000 7 7 3 7 7 7 7 7 7 7 7 5343100000 3751300000 1591700000 18742 940 17214 95133;95134;95135;95136;95137;95138;95139;95140;95141 115171;115172;115173;115174;115175;115176;115177;115178;115179;115180;115181;115182;115183;115184;115185;115186;115187 115186 1201 17 TGQPMINLYTDRETGK Unmodified 1822.8883 0.88834765 940 P35637;P35637-2 FUS RNA-binding protein FUS yes no 0 0 0 1 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 47.424 47.703 3 5.5746E-36 13641 20211116_3433_TMUAki_TMT10x_P_F5 214.46 194.79 26471000 42910000 312110 59222000 49883000 36834000 31205000 19086000 15551000 19885000 34662000 24649000 40101000 2707000 58930000 47372000 38506000 32144000 20325000 17184000 19388000 32845000 8 8 5 8 8 8 8 8 8 8 8 15463000 24017000 142770 33075000 41513000 31176000 25059000 11497000 9529700 11915000 19889000 14398000 22444000 1686500 33074000 39394000 31435000 25798000 12695000 10742000 11620000 18866000 5 5 3 5 5 5 5 5 5 5 5 11008000 18893000 169350 26147000 8369600 5658000 6145400 7589100 6021500 7969300 14773000 10251000 17657000 1020600 25856000 7978700 7071200 6346000 7630000 6441700 7767500 13980000 3 3 2 3 3 3 3 3 3 3 3 5035500000 3178300000 1857200000 18743 940 17214 95142;95143;95144;95145;95146;95147 115188;115189;115190;115191;115192;115193;115194;115195 115188 8 TGQPSAPGDTSVNGPV Unmodified 1482.6951 0.69505079 1917 Q5H9R7;Q5H9R7-4;Q5H9R7-6;Q5H9R7-2;Q5H9R7-5 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 yes no 0 0 0 0 By MS/MS 3 0 1 1 40.651 40.706 2 1.0378E-14 12168 20211116_3430_TMUAki_TMT10x_P_F3 146.36 135.53 66360 99235 2773.7 141680 229520 153450 75336 70150 101420 62840 98422 61808 92756 10372 141720 216370 153720 85286 75309 101930 61674 95037 1 1 1 1 1 1 1 1 1 1 1 66360 99235 2773.7 141680 229520 153450 75336 70150 101420 62840 98422 61808 92756 10372 141720 216370 153720 85286 75309 101930 61674 95037 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14960000 14960000 0 18744 1917 17215 95148 115196 115196 1 TGREDIANLADEFK Unmodified 1577.7686 0.76855009 2605 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 1 By MS/MS 4 0 1 1 58.343 58.248 3 0.024225 18264 20211116_3442_TMUAki_TMT10x_S_F4 48.423 34.459 2340600 4284800 67876 4722200 2527700 2259500 2375400 3345200 2659500 2904400 3359300 2179900 3999800 259930 4749700 2424000 2478200 2426300 3333200 2718000 2854700 3219000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2340600 4284800 67876 4722200 2527700 2259500 2375400 3345200 2659500 2904400 3359300 2179900 3999800 259930 4749700 2424000 2478200 2426300 3333200 2718000 2854700 3219000 1 1 1 1 1 1 1 1 1 1 1 292090000 0 292090000 18745 2605 17216 95149 115197 115197 1 TGRFEEAAGAAPCR Unmodified 1491.6889 0.68885998 3302 Q9Y4P3 TBL2 Transducin beta-like protein 2 yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 31.012 30.997 3 9.3057E-14 6789 20211116_3431_TMUAki_TMT10x_P_F4 143.46 115.25 496230 775440 3170.6 784900 1313600 1125100 631720 630930 640720 528670 773920 462070 723600 55543 805140 1242600 1114100 676710 663360 656160 520540 742450 2 2 2 2 2 2 2 2 2 2 2 496230 775440 3170.6 784900 1313600 1125100 631720 630930 640720 528670 773920 462070 723600 55543 805140 1242600 1114100 676710 663360 656160 520540 742450 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 44291000 44291000 0 18746 3302 17217 95150;95151 115198;115199 115198 2 TGRLPEAAFLAR Unmodified 1300.7252 0.72516913 936 P35606;P35606-2 COPB2 Coatomer subunit beta' yes no 0 0 0 1 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 44.99 44.925 3 1.0809E-13 11925 20211116_3428_TMUAki_TMT10x_P_F1 179.67 150.76 11432000 19005000 209180 21178000 17751000 19379000 13180000 14033000 12624000 12663000 15757000 10646000 17742000 1213900 21425000 16917000 19732000 13591000 14497000 12979000 12424000 15103000 8 8 6 8 8 8 8 8 8 8 8 7738000 12444000 102890 13888000 14030000 15992000 9729700 9368600 8437500 8316700 10521000 7205500 11617000 809270 14097000 13350000 16013000 10054000 9828200 8714200 8165800 10085000 5 5 4 5 5 5 5 5 5 5 5 3693800 6561300 106280 7290700 3720900 3386200 3449900 4664700 4187000 4346800 5235800 3440100 6125100 404620 7327900 3567400 3719200 3536400 4668700 4264500 4258400 5018400 3 3 2 3 3 3 3 3 3 3 3 1423500000 1022000000 401540000 18747 936 17218 95152;95153;95154;95155;95156;95157 115200;115201;115202;115203;115204;115205;115206;115207 115202 8 TGSAVAPVHPPNR Unmodified 1301.684 0.6840326 2173 Q8IZL8 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes yes 0 0 0 0 By MS/MS 5 0 1 1 29.136 29.066 3 0.0011522 6335 20211116_3433_TMUAki_TMT10x_P_F5 72.496 56.272 175730 263770 1958 246280 264100 320970 197880 208060 196210 175070 215410 163640 246060 17632 253590 251690 319830 204130 216250 200370 172340 207200 1 1 1 1 1 1 1 1 1 1 1 175730 263770 1958 246280 264100 320970 197880 208060 196210 175070 215410 163640 246060 17632 253590 251690 319830 204130 216250 200370 172340 207200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7363000 7363000 0 18748 2173 17219 95158 115208 115208 1 TGSPGPELLFHEGQQK Unmodified 1723.8529 0.85294842 1693 Q14202;Q14202-2;Q14202-3 ZMYM3 Zinc finger MYM-type protein 3 yes no 0 0 0 0 By MS/MS 5 0 1 1 48.649 48.828 3 0.0001338 13053 20211116_3444_TMUAki_TMT10x_S_F5 78.191 65.211 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18749 1693 17220 95159 115209 115209 1 TGSQGQCTQVRVEFMDDTSR Oxidation (M) 2317.0063 0.0063073045 1374 P62857 RPS28 40S ribosomal protein S28 yes yes 0 0 1 1 By MS/MS By MS/MS 3.14 0.833 2 2 3 3 4 35.8 35.746 3 1.1281E-12 10262 20211116_3430_TMUAki_TMT10x_P_F3 126.29 106.15 1151500 1930200 4447.7 1849800 2105700 1853900 1102500 2253300 1905900 1506200 1759900 1072100 1800700 100880 1892800 1993600 1897300 1195600 2248500 1898600 1501800 1702300 7 7 2 7 7 7 7 7 7 7 7 588470 966380 3202.8 918550 769630 1364900 631820 1202000 1068200 844230 914170 547930 901550 51589 947130 734510 1359300 661600 1219600 1062200 839260 886640 3 3 1 3 3 3 3 3 3 3 3 563040 963790 1244.9 931210 1336100 488950 470670 1051300 837650 661950 845770 524220 899200 49295 945680 1259100 538020 534030 1028900 836390 662530 815630 4 4 1 4 4 4 4 4 4 4 4 211920000 70215000 141710000 18750 1374 17221 95160;95161;95162;95163;95164;95165;95166 115210;115211;115212;115213;115214;115215;115216;115217;115218 115212 1847 9 TGSQGQCTQVRVEFMDDTSR Unmodified 2301.0114 0.011392682 1374 P62857 RPS28 40S ribosomal protein S28 yes yes 0 0 0 1 By MS/MS 4 0 1 1 41.555 41.764 3 1.4711E-19 11453 20211116_3442_TMUAki_TMT10x_S_F4 159.98 146.8 369340 644260 4055.2 729320 650180 208670 205770 380590 376780 286630 519900 343920 601480 38334 730230 612500 248560 237250 375470 380900 283810 497100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 369340 644260 4055.2 729320 650180 208670 205770 380590 376780 286630 519900 343920 601480 38334 730230 612500 248560 237250 375470 380900 283810 497100 1 1 1 1 1 1 1 1 1 1 1 74159000 0 74159000 18751 1374 17221 95167 115219 115219 1 TGTAEMSSILEER Oxidation (M) 1438.661 0.66097347 805 P25705;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 2 0.816 4 4 4 6 6 37.235 37.159 2;3 8.6068E-23 10383 20211116_3429_TMUAki_TMT10x_P_F2 214.54 188.52 4887200 7889300 64784 9374300 9186100 7543400 5360900 5931200 6850500 4677900 7278100 4550600 7367100 483350 9431000 8713100 7761400 5683900 6074300 6919200 4620300 7007700 11 11 5 11 11 11 11 11 11 11 11 2813100 4317100 34287 5017800 7358600 6175400 3663200 3310300 3694500 2694800 4012300 2619300 4030900 311800 5086800 6963800 6155300 3909900 3491900 3768400 2657200 3860700 5 5 2 5 5 5 5 5 5 5 5 2074100 3572200 30497 4356500 1827500 1368000 1697700 2620900 3156000 1983100 3265800 1931300 3336200 171550 4344200 1749300 1606100 1774000 2582400 3150800 1963100 3147000 6 6 3 6 6 6 6 6 6 6 6 1205600000 827990000 377560000 18752 805 17222 95168;95169;95170;95171;95172;95173;95174;95175;95176;95177;95178;95179 115220;115221;115222;115223;115224;115225;115226;115227;115228;115229;115230 115222 956 11 TGTAEMSSILEER Unmodified 1422.6661 0.66605885 805 P25705;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 2.64 0.881 1 4 4 2 6 5 52.307 52.149 2;3 1.3448E-53 15160 20211116_3440_TMUAki_TMT10x_S_F2 307.39 268.08 38847000 63465000 196550 77282000 53520000 47596000 39372000 33003000 31790000 33266000 49118000 36169000 59271000 3205300 77421000 50948000 49991000 40442000 34300000 33287000 32479000 46846000 13 13 3 13 13 13 13 13 13 13 13 18790000 29919000 156850 35689000 38015000 35202000 26573000 15867000 15206000 15910000 23434000 17495000 27939000 1782200 35994000 36160000 35457000 27201000 17110000 16259000 15537000 22351000 6 6 2 6 6 6 6 6 6 6 6 20057000 33546000 39693 41593000 15505000 12394000 12799000 17136000 16584000 17356000 25683000 18673000 31332000 1423200 41427000 14787000 14534000 13241000 17190000 17029000 16942000 24494000 7 7 1 7 7 7 7 7 7 7 7 3276900000 1815000000 1461900000 18753 805 17222 95180;95181;95182;95183;95184;95185;95186;95187;95188;95189;95190 115231;115232;115233;115234;115235;115236;115237;115238;115239;115240;115241;115242;115243;115244 115238 14 TGTAYTFFTPNNIK Unmodified 1573.7777 0.77765821 710 P17844;P17844-2 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 0 By MS/MS By MS/MS 3 2.25 3 4 4 2 7 6 65.188 64.948 2;3 4.4124E-37 21677 20211116_3429_TMUAki_TMT10x_P_F2 244.16 207.47 145380000 254500000 1088100 231380000 149190000 259170000 171570000 159390000 181380000 167040000 185390000 135360000 237390000 11928000 238090000 143600000 260070000 173160000 167150000 184230000 162830000 178720000 19 19 10 19 19 19 19 18 19 19 19 96742000 171840000 738580 152670000 115190000 204390000 123450000 108160000 121290000 114750000 122120000 90076000 160270000 8283600 157880000 110660000 202870000 124730000 115030000 123520000 111800000 117780000 11 11 7 11 11 11 11 11 11 11 11 48639000 82663000 349560 78710000 34000000 54778000 48116000 51232000 60084000 52291000 63274000 45286000 77118000 3644300 80219000 32944000 57201000 48438000 52129000 60715000 51026000 60939000 8 8 3 8 8 8 8 7 8 8 8 15221000000 9237400000 5984100000 18754 710 17223 95191;95192;95193;95194;95195;95196;95197;95198;95199;95200;95201;95202;95203 115245;115246;115247;115248;115249;115250;115251;115252;115253;115254;115255;115256;115257;115258;115259;115260;115261;115262;115263;115264;115265 115251 21 TGTCGYCGLQFR Unmodified 1418.6071 0.60710418 329 O75380 NDUFS6 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial yes yes 0 0 0 0 By MS/MS 8 0 1 1 45.443 45.385 2 1.833E-11 11783 20211116_3447_TMUAki_TMT10x_S_F8 160.53 141.28 925060 1487700 0 1817000 598800 472680 469400 605180 520090 515070 1004700 861180 1389500 54469 1810300 569760 567440 484470 605920 544080 506760 954150 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 925060 1487700 0 1817000 598800 472680 469400 605180 520090 515070 1004700 861180 1389500 54469 1810300 569760 567440 484470 605920 544080 506760 954150 1 1 0 1 1 1 1 1 1 1 1 55953000 0 55953000 18755 329 17224 95204 115266 115266 1 TGTGTLSVFGMQAR Oxidation (M) 1440.7031 0.70311306 493 P04818;P04818-2;P04818-3 TYMS Thymidylate synthase yes no 0 0 1 0 By MS/MS By MS/MS 6.25 3.03 1 3 2 2 47.714 47.72 2;3 0.00011807 13202 20211116_3436_TMUAki_TMT10x_P_F8 98.249 78.11 858620 1509700 0 1596400 1785100 2352000 1193500 1094300 1169500 942750 1261000 799440 1409000 81713 1633700 1696600 2321200 1240800 1171500 1194100 926980 1213600 1 1 0 1 1 1 1 1 1 1 1 858620 1509700 0 1596400 1785100 2352000 1193500 1094300 1169500 942750 1261000 799440 1409000 81713 1633700 1696600 2321200 1240800 1171500 1194100 926980 1213600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 284900000 192840000 92059000 18756 493 17225 95205;95206;95207;95208 115267;115268;115269 115268 396 3 TGTGTLSVFGMQAR Unmodified 1424.7082 0.70819844 493 P04818;P04818-2;P04818-3 TYMS Thymidylate synthase yes no 0 0 0 0 By MS/MS 2 0 1 1 56.832 56.582 2 1.0141E-29 18273 20211116_3429_TMUAki_TMT10x_P_F2 209.95 180.79 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18757 493 17225 95209 115270 115270 1 TGTITTFEHAHNMR Oxidation (M) 1630.7522 0.75218852 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 1 0 By MS/MS 4.6 0.49 2 3 5 30.631 30.607 2;3;4 2.4175E-14 6890 20211116_3433_TMUAki_TMT10x_P_F5 154.1 143.45 1693000 2543600 48574 2738600 4505400 3645200 2135400 1843500 1959100 1656500 2387500 1576500 2374100 201480 2793600 4261800 3617100 2284500 1959700 2015900 1625500 2289800 5 5 3 5 5 5 5 5 5 5 5 1693000 2543600 48574 2738600 4505400 3645200 2135400 1843500 1959100 1656500 2387500 1576500 2374100 201480 2793600 4261800 3617100 2284500 1959700 2015900 1625500 2289800 5 5 3 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2285800000 2285800000 0 18758 653 17226 95210;95211;95212;95213;95214 115271;115272;115273;115274;115275 115274 711 5 TGTITTFEHAHNMR Unmodified 1614.7573 0.75727389 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 By MS/MS 4.67 0.471 1 2 3 33.405 33.391 3;4 5.5909E-36 8006 20211116_3433_TMUAki_TMT10x_P_F5 231.07 197.8 3566200 6068400 91974 5116900 6454000 7234900 4626400 2930600 3410400 3259200 4405600 3321100 5658900 415150 5319000 6147600 7143000 4750700 3206700 3558000 3169500 4219100 2 2 1 2 2 2 2 2 2 2 2 3566200 6068400 91974 5116900 6454000 7234900 4626400 2930600 3410400 3259200 4405600 3321100 5658900 415150 5319000 6147600 7143000 4750700 3206700 3558000 3169500 4219100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 438150000 438150000 0 18759 653 17226 95215;95216;95217 115276;115277;115278 115278 3 TGTIVVEGHELHDEDIR Unmodified 1918.9385 0.93846896 1002 P41252 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 By MS/MS By MS/MS 1.9 0.831 4 3 3 5 5 39.03 38.915 3;4 7.6875E-36 11559 20211116_3439_TMUAki_TMT10x_S_F1 200.69 191.44 5779700 9258800 22472 10383000 10064000 9673700 6406200 8533200 8927500 7344000 8980300 5380900 8643700 460410 10503000 9552600 9873100 6767400 8697900 8973700 7221500 8661300 13 13 5 13 13 13 13 13 13 13 13 3102400 4750100 16070 5101500 7680800 7543400 4359700 4316900 4512900 3804900 4687100 2888200 4433700 272120 5216100 7278000 7461600 4600700 4536700 4590600 3737200 4516000 5 5 1 5 5 5 5 5 5 5 5 2677400 4508700 6401.4 5281900 2383100 2130400 2046500 4216200 4414600 3539000 4293200 2492700 4210000 188290 5286600 2274700 2411500 2166800 4161200 4383100 3484300 4145300 8 8 4 8 8 8 8 8 8 8 8 2171800000 1374000000 797840000 18760 1002 17227 95218;95219;95220;95221;95222;95223;95224;95225;95226;95227 115279;115280;115281;115282;115283;115284;115285;115286;115287;115288;115289;115290;115291 115285 13 TGTVSLEVR Unmodified 960.52401 0.52400971 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 4.18 2.09 2 2 2 5 2 1 1 2 8 9 35.617 35.697 2 4.6237E-05 7946 20211116_3442_TMUAki_TMT10x_S_F4 150.17 105.21 34293000 54960000 76097 50764000 42259000 45737000 34862000 30660000 29973000 28715000 40175000 31926000 51268000 2455200 52009000 40302000 46565000 35597000 31876000 31069000 28124000 38440000 26 26 13 26 26 26 26 26 26 26 26 20715000 32639000 18596 29742000 28974000 35030000 22008000 19400000 19093000 18082000 24548000 19285000 30445000 1444900 30625000 27581000 35009000 22597000 20474000 19745000 17714000 23511000 9 9 3 9 9 9 9 9 9 9 9 13578000 22322000 57501 21023000 13285000 10707000 12854000 11260000 10880000 10632000 15628000 12641000 20824000 1010300 21384000 12721000 11556000 13000000 11401000 11323000 10410000 14929000 17 17 10 17 17 17 17 17 17 17 17 1936700000 1281000000 655680000 18761 1092 17228 95228;95229;95230;95231;95232;95233;95234;95235;95236;95237;95238;95239;95240;95241;95242;95243;95244 115292;115293;115294;115295;115296;115297;115298;115299;115300;115301;115302;115303;115304;115305;115306;115307;115308;115309;115310;115311;115312;115313;115314;115315;115316;115317;115318;115319 115312 28 TGVAVNKPAEFTVDAK Unmodified 1645.8675 0.86753585 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 49.124 49.526 3 1.1592E-22 15122 20211116_3435_TMUAki_TMT10x_P_F7 179.46 153.31 30031000 47534000 43336 55964000 58192000 49208000 34955000 42672000 45079000 33360000 44437000 27961000 44385000 2778300 56396000 55206000 50400000 36985000 43437000 45394000 32964000 42887000 4 4 2 4 4 4 4 4 4 4 4 16058000 24323000 0 29660000 44703000 37965000 22574000 21575000 22829000 16731000 22758000 14951000 22716000 1586200 30006000 42298000 37796000 24063000 22618000 23211000 16540000 21956000 2 2 0 2 2 2 2 2 2 2 2 13973000 23210000 43336 26303000 13489000 11243000 12382000 21097000 22250000 16628000 21679000 13010000 21669000 1192000 26390000 12908000 12604000 12922000 20818000 22183000 16424000 20930000 2 2 2 2 2 2 2 2 2 2 2 3420500000 2230100000 1190400000 18762 755 17229 95245;95246;95247 115320;115321;115322;115323 115321 4 TGVCICFYQHK Unmodified 1411.6377 0.63767603 2918 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 0 By MS/MS By matching 1.67 0.471 1 2 2 1 47.102 46.989 3 0.00016911 12777 20211116_3428_TMUAki_TMT10x_P_F1 90.653 76.234 7045900 11460000 44515 13575000 14495000 18376000 9527100 11198000 10297000 9407900 9731700 6560600 10701000 710940 13771000 13775000 18263000 9947300 11694000 10422000 9262000 9405400 4 4 2 4 4 4 4 4 4 4 4 7045900 11460000 44515 13575000 14495000 18376000 9527100 11198000 10297000 9407900 9731700 6560600 10701000 710940 13771000 13775000 18263000 9947300 11694000 10422000 9262000 9405400 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 430790000 322200000 108600000 18763 2918 17230 95248;95249;95250 115324;115325;115326;115327 115324 4 TGVCICFYQHKEEYQLVQVEQK Unmodified 2785.3204 0.32037122 2918 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 1 By MS/MS 7.5 0.5 1 1 2 59.43 59.689 4 4.1197E-14 19780 20211116_3446_TMUAki_TMT10x_S_F7 130.05 117.37 7875200 14514000 0 12979000 11647000 8676200 8753000 10721000 8444700 10309000 10974000 7332100 13538000 648300 13285000 11091000 9150100 9020300 10784000 8694300 10085000 10508000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7875200 14514000 0 12979000 11647000 8676200 8753000 10721000 8444700 10309000 10974000 7332100 13538000 648300 13285000 11091000 9150100 9020300 10784000 8694300 10085000 10508000 2 2 0 2 2 2 2 2 2 2 2 1808300000 0 1808300000 18764 2918 17231 95251;95252 115328;115329 115328 2 TGVELGKPTHFTVNAK Unmodified 1697.9101 0.91006937 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 1 By MS/MS By MS/MS 3.83 3.02 2 1 1 2 2 4 43.602 43.547 4 4.2725E-29 11492 20211116_3436_TMUAki_TMT10x_P_F8 191.78 158.08 10855000 17084000 153640 20398000 24871000 22767000 12369000 14039000 16411000 13234000 15502000 10105000 15953000 900690 20611000 23521000 22852000 13325000 14690000 16486000 12958000 14982000 7 7 4 7 7 7 7 7 7 7 7 7548000 11447000 46682 13474000 21870000 19679000 9642800 10180000 11602000 8651200 10458000 7025600 10689000 531120 13696000 20644000 19451000 10481000 10784000 11677000 8512200 10124000 4 4 1 4 4 4 4 4 4 4 4 3306900 5637000 106960 6924100 3000900 3088800 2726000 3858900 4808500 4582900 5043700 3079900 5264700 369570 6915400 2877000 3400500 2844000 3906300 4809100 4446100 4858200 3 3 3 3 3 3 3 3 3 3 3 1497900000 985270000 512580000 18765 755 17232 95253;95254;95255;95256;95257;95258 115330;115331;115332;115333;115334;115335;115336 115332 7 TGVGPFNPGR Unmodified 1000.509 0.50902834 3093 Q9UBW7;Q9UBW7-2 ZMYM2 Zinc finger MYM-type protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 37.717 38.101 2 0.00091596 8587 20211116_3447_TMUAki_TMT10x_S_F8 97.635 70.381 509210 773700 5265.9 948310 836820 702920 525880 629710 676480 512540 700830 474160 722600 51713 951430 794880 729580 554350 640430 682480 505400 675310 2 2 2 2 2 2 2 2 2 2 2 240170 366100 4244.7 453620 596600 508430 305290 288880 328280 241380 332850 223650 341940 28860 457410 564980 509640 325610 303370 333130 237700 320950 1 1 1 1 1 1 1 1 1 1 1 269040 407600 1021.2 494690 240220 194500 220600 340830 348200 271170 367980 250510 380660 22853 494020 229900 219940 228740 337060 349350 267710 354360 1 1 1 1 1 1 1 1 1 1 1 47452000 34729000 12723000 18766 3093 17233 95259;95260;95261 115337;115338 115338 2 TGVIHEK Unmodified 782.42865 0.42865276 2516 Q96M27;Q96M27-3;Q96M27-2;Q96M27-5 PRRC1 Protein PRRC1 yes no 0 0 0 0 By MS/MS 4 0 1 1 28.806 28.851 3 0.056543 5927 20211116_3431_TMUAki_TMT10x_P_F4 43.246 20.417 300990 456580 5116 402380 338560 514870 332700 277590 265290 254620 368010 280290 425830 30248 416000 324790 512250 335690 293530 276480 249620 351830 1 1 1 1 1 1 1 1 1 1 1 300990 456580 5116 402380 338560 514870 332700 277590 265290 254620 368010 280290 425830 30248 416000 324790 512250 335690 293530 276480 249620 351830 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7772000 7772000 0 18767 2516 17234 95262 115339 115339 1 TGVLAAVLASQPSIPR Unmodified 1578.9093 0.90934108 2433 Q96D71;Q96D71-2;Q96D71-4;Q96D71-3 REPS1 RalBP1-associated Eps domain-containing protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 76.041 76.07 3 1.4844E-15 24213 20211116_3444_TMUAki_TMT10x_S_F5 140.93 126.67 2914700 4984000 143920 4563600 3027500 5722700 3566500 3148300 3205000 3390700 3811500 2714900 4649000 377360 4702600 2925200 5700500 3578300 3338100 3297900 3301500 3658100 2 2 2 2 2 2 2 2 2 2 2 2914700 4984000 143920 4563600 3027500 5722700 3566500 3148300 3205000 3390700 3811500 2714900 4649000 377360 4702600 2925200 5700500 3578300 3338100 3297900 3301500 3658100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 544670000 544670000 0 18768 2433 17235 95263;95264;95265;95266 115340;115341;115342;115343 115343 4 TGVVPQLVK Unmodified 939.57532 0.57531699 1172 P52292 KPNA2 Importin subunit alpha-1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 51.391 51.296 2 4.7996E-05 14572 20211116_3428_TMUAki_TMT10x_P_F1 105.78 91.79 8889000 14997000 46229 14727000 11749000 11354000 8597700 11615000 12085000 9836900 12622000 8276400 13992000 754070 14993000 11185000 11781000 8993800 11743000 12161000 9680400 12159000 3 3 1 3 3 3 3 3 3 3 3 2934700 4836000 0 4529800 6204200 6067900 3529900 3777200 3889700 3206000 3980300 2732400 4511400 274300 4665800 5880700 6035200 3731500 3938900 3944500 3154700 3836900 1 1 0 1 1 1 1 1 1 1 1 5954300 10161000 46229 10198000 5545300 5286000 5067800 7837300 8195000 6630800 8641200 5544000 9481000 479770 10327000 5304500 5745300 5262300 7803600 8216000 6525700 8322000 2 2 1 2 2 2 2 2 2 2 2 1036500000 416000000 620480000 18769 1172 17236 95267;95268;95269;95270 115344;115345;115346;115347 115344 4 TGYAFVDCPDESWALK Unmodified 1857.8244 0.82435041 86 O00425 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 5.25 0.829 1 1 2 3 1 74.216 74.186 3 0.000216 23377 20211116_3434_TMUAki_TMT10x_P_F6 77.222 67.165 25173000 42669000 355410 38825000 26545000 41454000 32524000 21532000 21051000 23268000 31243000 23440000 39800000 2269900 39918000 25614000 41621000 32323000 22950000 22280000 22653000 29823000 7 7 4 7 7 7 7 7 7 7 7 22577000 38050000 266520 34221000 23196000 38633000 28873000 19136000 19175000 20692000 27671000 21022000 35490000 1961300 35248000 22390000 38647000 28690000 20487000 20233000 20145000 26431000 6 6 3 6 6 6 6 6 6 6 6 2596000 4618700 88896 4603300 3348700 2820800 3651500 2395900 1876300 2575800 3571400 2417800 4309700 308620 4670600 3223900 2974000 3633100 2462800 2046700 2508200 3392800 1 1 1 1 1 1 1 1 1 1 1 1218500000 720650000 497830000 18770 86 17237 95271;95272;95273;95274 115348;115349;115350;115351;115352;115353;115354;115355 115353 8 TGYPYRYPALR Unmodified 1355.6986 0.69862003 938 P35611;P35611-2;P35611-4;P35611-6;P35611-3;P35611-5 ADD1 Alpha-adducin yes no 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 38.957 38.811 3 3.4538E-08 12589 20211116_3441_TMUAki_TMT10x_S_F3 143 113.23 2131700 3520100 129660 3975500 3512000 3396500 2431000 3310600 3249200 2559200 3387400 1985800 3286400 316910 4014900 3348100 3493900 2547700 3347800 3274600 2530400 3263500 3 3 3 3 3 3 3 3 3 3 3 770710 1331500 34748 1525500 2312800 2199900 1262000 1296700 1361200 1043100 1291600 717870 1243100 117880 1552600 2193300 2179200 1338100 1356400 1378000 1029200 1248100 1 1 1 1 1 1 1 1 1 1 1 1361000 2188600 94916 2450000 1199200 1196700 1169000 2013800 1888000 1516200 2095800 1267900 2043200 199030 2462200 1154800 1314700 1209600 1991400 1896700 1501300 2015300 2 2 2 2 2 2 2 2 2 2 2 214350000 92658000 121690000 18771 938 17238 95275;95276;95277 115356;115357;115358 115358 3 TGYTLDVTTGQR Unmodified 1310.6466 0.64664404 271;272;211 O60506;O60506-2;O60506-3;O60506-4;O43390;O43390-2;O43390-4 SYNCRIP;HNRNPR Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R no no 0 0 0 0 By MS/MS By MS/MS 4.29 1.27 1 4 5 4 2 1 8 9 41.295 41.383 2;3 1.108E-38 10981 20211116_3431_TMUAki_TMT10x_P_F4 288.42 258.27 31384000 49399000 132300 52531000 48375000 48436000 35658000 41782000 41106000 36710000 45245000 29221000 46106000 2742700 53308000 46058000 49446000 37003000 42665000 41727000 36062000 43518000 21 21 7 21 21 21 21 21 21 21 21 15424000 23754000 104380 25117000 32685000 34333000 19394000 20178000 20211000 17954000 22262000 14361000 22170000 1541900 25665000 31007000 34090000 20392000 21163000 20599000 17627000 21412000 10 10 4 10 10 10 10 10 10 10 10 15960000 25645000 27920 27414000 15691000 14103000 16264000 21604000 20895000 18756000 22983000 14859000 23936000 1200800 27643000 15052000 15357000 16611000 21502000 21128000 18435000 22106000 11 11 3 11 11 11 11 11 11 11 11 14335000000 7126200000 7208500000 18772 271;272;211 17239 95278;95279;95280;95281;95282;95283;95284;95285;95286;95287;95288;95289;95290;95291;95292;95293;95294 115359;115360;115361;115362;115363;115364;115365;115366;115367;115368;115369;115370;115371;115372;115373;115374;115375;115376;115377;115378;115379;115380;115381;115382 115363 24 TGYTLDVTTGQRK Unmodified 1438.7416 0.74160705 271;272;211 O60506;O60506-2;O60506-3;O60506-4;O43390;O43390-2;O43390-4 SYNCRIP;HNRNPR Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R no no 0 0 0 1 By MS/MS By MS/MS 7.29 0.7 1 3 3 6 1 35.761 36.088 3 1.372E-22 8083 20211116_3447_TMUAki_TMT10x_S_F8 201.48 156.64 2979000 4612600 33131 4501200 4827700 4583500 3082400 3949600 4142300 3331900 3960600 2773900 4303600 288700 4601000 4586200 4650000 3250700 4029100 4161300 3279500 3826300 14 14 9 14 14 14 14 14 14 14 14 2033600 3056500 13309 2934000 3237800 3720800 2109300 2626100 2791400 2239300 2557000 1893500 2851600 182820 3013600 3076000 3717400 2219700 2713700 2801600 2202900 2473900 10 10 5 10 10 10 10 10 10 10 10 945410 1556100 19823 1567200 1589900 862670 973090 1323500 1350900 1092600 1403600 880420 1452100 105880 1587400 1510200 932640 1031000 1315400 1359700 1076600 1352300 4 4 4 4 4 4 4 4 4 4 4 266360000 157170000 109180000 18773 271;272;211 17240 95295;95296;95297;95298;95299;95300;95301 115383;115384;115385;115386;115387;115388;115389;115390;115391;115392;115393;115394;115395;115396;115397;115398 115397 16 THCPIYLVNVSSISAGDVIAAAK Unmodified 2385.2362 0.23623089 2617 Q9BPU6 DPYSL5 Dihydropyrimidinase-related protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 3.43 2.92 2 3 2 2 5 73.553 73.44 3;4 1.1006E-15 25557 20211116_3439_TMUAki_TMT10x_S_F1 133.38 116.3 32735000 58475000 228020 51554000 37492000 44955000 38727000 30463000 28087000 33861000 40560000 30479000 54538000 2698500 52983000 35975000 45879000 38889000 31805000 29482000 32930000 38741000 14 14 6 14 14 14 14 14 14 14 14 12734000 21028000 44139 18948000 11884000 23219000 14830000 11076000 10683000 12680000 15189000 11856000 19613000 971010 19541000 11465000 23117000 14760000 11922000 11209000 12318000 14513000 5 5 1 5 5 5 5 5 5 5 5 20001000 37448000 183880 32605000 25608000 21737000 23897000 19386000 17404000 21181000 25371000 18623000 34925000 1727500 33442000 24510000 22761000 24129000 19883000 18273000 20612000 24228000 9 9 5 9 9 9 9 9 9 9 9 6433900000 2632000000 3801900000 18774 2617 17241 95302;95303;95304;95305;95306;95307;95308 115399;115400;115401;115402;115403;115404;115405;115406;115407;115408;115409;115410;115411;115412 115405 14 THEAEIVEGENHTYCIR Unmodified 2056.9273 0.92725235 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By matching 2.5 0.5 1 1 1 1 34.593 34.362 4 1.2304E-07 9331 20211116_3429_TMUAki_TMT10x_P_F2 108.34 97.067 280570 470000 26.391 485700 699110 643030 377100 360970 410670 237080 394170 261240 438620 29148 496730 662250 639030 400380 377530 415730 236650 380750 1 1 1 1 1 1 1 1 1 1 1 280570 470000 26.391 485700 699110 643030 377100 360970 410670 237080 394170 261240 438620 29148 496730 662250 639030 400380 377530 415730 236650 380750 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78622000 61269000 17353000 18775 755 17242 95309;95310 115413 115413 1 THEAQIQEMR Unmodified 1241.5823 0.58226964 934 P35579 MYH9 Myosin-9 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 27.84 27.604 3 0.00016175 6632 20211116_3429_TMUAki_TMT10x_P_F2 109.16 87.693 102490 150630 3946.1 181380 134270 159520 96513 80189 79594 105790 124630 95459 140670 12620 182530 128040 162070 99348 86301 83312 102260 118830 1 1 1 1 1 1 1 1 1 1 1 102490 150630 3946.1 181380 134270 159520 96513 80189 79594 105790 124630 95459 140670 12620 182530 128040 162070 99348 86301 83312 102260 118830 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2125900 2125900 0 18776 934 17243 95311;95312 115414;115415 115414 2 THEDIEAQIR Unmodified 1210.5942 0.59421454 345 O75533;O75533-2 SF3B1 Splicing factor 3B subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 3 4 31.244 31.138 2;3 7.9487E-12 7971 20211116_3429_TMUAki_TMT10x_P_F2 214.71 185.17 2188000 3337700 29687 3337800 3188900 3202300 2540800 2319900 2392700 2070400 2844500 2037400 3114500 217370 3403100 3043000 3250800 2606500 2395800 2456700 2032300 2730000 8 8 6 8 8 8 8 8 8 8 8 1320700 1917500 19077 2016800 2230900 2363600 1518100 1467600 1517100 1270900 1777700 1229900 1789600 140020 2055600 2122300 2366400 1577100 1531500 1552600 1249300 1706800 4 4 4 4 4 4 4 4 4 4 4 867260 1420200 10610 1321000 958060 838640 1022700 852330 875620 799450 1066900 807560 1324800 77347 1347500 920700 884410 1029500 864310 904020 782970 1023200 4 4 2 4 4 4 4 4 4 4 4 593970000 273770000 320210000 18777 345 17244 95313;95314;95315;95316;95317;95318;95319 115416;115417;115418;115419;115420;115421;115422;115423;115424 115419 9 THFDYQFGYR Unmodified 1332.5887 0.58873523 2013 Q6PKG0;Q6PKG0-3 LARP1 La-related protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 43.544 43.908 3 2.5636E-10 11308 20211116_3445_TMUAki_TMT10x_S_F6 167.67 161.71 2832200 4659500 66764 5054600 4762300 5403800 3616100 4642000 4654300 4074600 4241000 2637500 4349300 318860 5133800 4541200 5466400 3760100 4741200 4674900 4002900 4104000 4 4 3 4 4 4 4 4 4 4 4 1781400 2793000 40000 3084500 3599000 4410800 2702000 2640900 2710700 2530400 2541800 1658900 2607300 205220 3145900 3430400 4371800 2787900 2771100 2751300 2475900 2457200 2 2 1 2 2 2 2 2 2 2 2 1050800 1866500 26765 1970100 1163300 993020 914120 2001200 1943700 1544200 1699300 978620 1742000 113640 1987900 1110800 1094600 972130 1970100 1923600 1527000 1646800 2 2 2 2 2 2 2 2 2 2 2 1586000000 1341000000 245000000 18778 2013 17245 95320;95321;95322;95323 115425;115426;115427;115428;115429 115427 5 THFFLNAGNLCNLNYGEGPK Unmodified 2265.0637 0.063686249 3310 Q9Y512 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 3 1 2 64.779 64.522 3;4 2.6474E-18 21533 20211116_3429_TMUAki_TMT10x_P_F2 148.52 127.58 15258000 26278000 90753 22061000 16923000 19383000 17086000 14491000 12905000 14977000 17465000 14206000 24505000 1255200 22764000 16229000 19801000 17193000 14995000 13474000 14607000 16707000 4 4 2 4 4 4 4 4 4 4 4 4196500 8021100 50037 6637500 4993400 8069600 5521600 4704900 3505000 4583100 5266600 3907700 7479400 405710 6890500 4804200 8056800 5510800 4949800 3716500 4481200 5026000 1 1 1 1 1 1 1 1 1 1 1 11061000 18257000 40715 15424000 11930000 11313000 11564000 9786200 9400200 10394000 12198000 10298000 17025000 849490 15873000 11424000 11744000 11682000 10045000 9757100 10126000 11681000 3 3 1 3 3 3 3 3 3 3 3 3239500000 1629300000 1610200000 18779 3310 17246 95324;95325;95326 115430;115431;115432;115433 115430 4 THFGGGK Unmodified 702.34492 0.34492313 1371 P62847;P62847-2;P62847-3;P62847-4 RPS24 40S ribosomal protein S24 yes no 0 0 0 0 By MS/MS 5 0 1 1 27.737 27.664 3 0.023547 5778 20211116_3433_TMUAki_TMT10x_P_F5 62.717 49.729 1361900 1884800 3864.1 1408500 993530 1700500 981040 825850 797870 826000 1319000 1268100 1756900 102350 1475000 951970 1694700 990090 883810 838200 806710 1256300 2 2 1 2 2 2 2 2 2 2 2 1361900 1884800 3864.1 1408500 993530 1700500 981040 825850 797870 826000 1319000 1268100 1756900 102350 1475000 951970 1694700 990090 883810 838200 806710 1256300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7528100 7528100 0 18780 1371 17247 95327 115434;115435 115434 2 THFLMPFPVNYVGECIR Oxidation (M) 2095.0019 0.0019376155 1919 Q5JRX3;Q5JRX3-2;Q5JRX3-3 PITRM1 Presequence protease, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 2 0 2 1 1 66.031 65.72 3 7.9636E-05 20716 20211116_3440_TMUAki_TMT10x_S_F2 79.837 69.779 3993700 6033400 30535 5810900 4767400 7991800 4541900 5157100 4774900 4245000 5261300 3718100 5629000 297600 5976400 4562700 7943300 4626100 5359100 4864700 4183500 5060300 2 2 1 2 2 2 2 2 2 2 2 3993700 6033400 30535 5810900 4767400 7991800 4541900 5157100 4774900 4245000 5261300 3718100 5629000 297600 5976400 4562700 7943300 4626100 5359100 4864700 4183500 5060300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 393140000 393140000 0 18781 1919 17248 95328;95329 115436;115437;115438 115438 2514 3 THFNKGPSYGLSAEVK Acetyl (Protein N-term) 1775.8842 0.88424855 1802 Q15417;Q15417-3 CNN3 Calponin-3 yes no 1 0 0 1 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 44.873 45.398 3 1.2904E-21 13980 20211116_3446_TMUAki_TMT10x_S_F7 88.992 69.225 961980 2276600 14810 1437900 1854700 2035100 881140 3931400 3907600 3217600 2674300 895810 2121200 106060 1535100 1754800 2079000 1038400 3880200 3799100 3171900 2618000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 961980 2276600 14810 1437900 1854700 2035100 881140 3931400 3907600 3217600 2674300 895810 2121200 106060 1535100 1754800 2079000 1038400 3880200 3799100 3171900 2618000 2 2 2 2 2 2 2 2 2 2 2 138380000 0 138380000 18782 1802 17249 95330;95331 115439;115440;115441 115441 3 THIDVIHYR Unmodified 1152.604 0.60399136 911 P33991 MCM4 DNA replication licensing factor MCM4 yes yes 0 0 0 0 By MS/MS 5 0 1 1 32.527 32.467 3 0.00014446 7693 20211116_3433_TMUAki_TMT10x_P_F5 125.16 104.86 600990 880650 11188 962430 1001900 995070 635710 567720 591130 500160 717650 559660 822040 65868 976550 952140 1002100 662590 596760 607820 491260 688380 1 1 1 1 1 1 1 1 1 1 1 600990 880650 11188 962430 1001900 995070 635710 567720 591130 500160 717650 559660 822040 65868 976550 952140 1002100 662590 596760 607820 491260 688380 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78216000 78216000 0 18783 911 17250 95332 115442 115442 1 THILLFLPK Unmodified 1080.6696 0.66955173 533 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 0.943 1 3 1 1 4 2 62.508 62.463 2;3 1.0811E-05 19963 20211116_3442_TMUAki_TMT10x_S_F4 110.87 73.76 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18784 533 17251 95333;95334;95335;95336;95337;95338 115443;115444;115445;115446;115447;115448 115447 6 THINIVVIGHVDSGK Unmodified 1587.8733 0.87328993 1416;1520 P68104;Q5VTE0;Q05639 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2 no no 0 0 0 0 By MS/MS By MS/MS 4.64 2.31 4 4 5 5 4 3 6 5 20 16 44.121 44.187 2;3;4 2.5653E-49 12896 20211116_3435_TMUAki_TMT10x_P_F7 258.62 213.26 165770000 279500000 1365400 282100000 237520000 310940000 182620000 190320000 184440000 184300000 202650000 154350000 260820000 14304000 288040000 226350000 312280000 188160000 199410000 188210000 180250000 194930000 70 70 43 70 70 70 70 70 70 70 70 108830000 180580000 825720 182430000 180410000 261470000 127750000 125960000 125500000 125270000 129710000 101330000 168500000 9565400 187160000 171650000 258450000 132260000 134890000 127920000 122370000 125000000 37 37 22 37 37 37 37 37 37 37 37 56941000 98928000 539700 99667000 57108000 49471000 54869000 64358000 58944000 59030000 72942000 53018000 92313000 4738200 100870000 54702000 53829000 55899000 64524000 60284000 57871000 69931000 33 33 21 33 33 33 33 33 33 33 33 56246000000 36882000000 19364000000 18785 1416;1520 17252 95339;95340;95341;95342;95343;95344;95345;95346;95347;95348;95349;95350;95351;95352;95353;95354;95355;95356;95357;95358;95359;95360;95361;95362;95363;95364;95365;95366;95367;95368;95369;95370;95371;95372;95373;95374 115449;115450;115451;115452;115453;115454;115455;115456;115457;115458;115459;115460;115461;115462;115463;115464;115465;115466;115467;115468;115469;115470;115471;115472;115473;115474;115475;115476;115477;115478;115479;115480;115481;115482;115483;115484;115485;115486;115487;115488;115489;115490;115491;115492;115493;115494;115495;115496;115497;115498;115499;115500;115501;115502;115503;115504;115505;115506;115507;115508;115509;115510;115511;115512;115513;115514;115515;115516;115517;115518;115519;115520;115521 115481 73 THLMSESEWR Oxidation (M) 1290.5663 0.56628523 1289 P61024 CKS1B Cyclin-dependent kinases regulatory subunit 1 yes yes 0 0 1 0 By MS/MS 3 0 1 1 31.371 31.118 3 0.0014647 9494 20211116_3441_TMUAki_TMT10x_S_F3 73.499 56.96 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18786 1289 17253 95375 115522 115522 1741 1 THLPGFVEQAEALK Unmodified 1538.8093 0.80929269 860 P30044;P30044-2 PRDX5 Peroxiredoxin-5, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.27 1.21 1 2 3 3 2 6 5 58.551 58.7 2;3 1.9932E-24 17400 20211116_3445_TMUAki_TMT10x_S_F6 198.57 185.62 174390000 287930000 1695400 298850000 238640000 274940000 197180000 216970000 200950000 195840000 226580000 162390000 268710000 16228000 303750000 227830000 280260000 202290000 222900000 205180000 192140000 217780000 18 18 9 18 18 18 18 18 18 18 18 96027000 157820000 895420 166590000 127830000 197210000 122980000 119600000 109320000 109880000 123990000 89414000 147300000 8905600 169790000 122480000 197270000 124580000 125230000 112330000 107710000 119160000 9 9 5 9 9 9 9 9 9 9 9 78368000 130110000 800020 132270000 110810000 77728000 74194000 97372000 91634000 85969000 102590000 72972000 121410000 7322800 133960000 105360000 82990000 77713000 97669000 92847000 84432000 98622000 9 9 4 9 9 9 9 9 9 9 9 17572000000 8752900000 8819300000 18787 860 17254 95376;95377;95378;95379;95380;95381;95382;95383;95384;95385;95386 115523;115524;115525;115526;115527;115528;115529;115530;115531;115532;115533;115534;115535;115536;115537;115538;115539;115540;115541 115538 19 THLRDMIILPEMVGSMVGVYNGK 3 Oxidation (M) 2607.2859 0.28589997 1370 P62841 RPS15 40S ribosomal protein S15 yes yes 0 0 3 1 By MS/MS 8 0 1 1 54.909 54.841 4 5.1763E-05 15558 20211116_3447_TMUAki_TMT10x_S_F8 66.383 53.581 2061400 3684100 15230 3237200 2868300 2525200 1900700 5328200 4781200 3626100 3317800 1919500 3436000 194220 3323400 2726700 2679400 2067700 5225000 4686100 3611500 3245800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2061400 3684100 15230 3237200 2868300 2525200 1900700 5328200 4781200 3626100 3317800 1919500 3436000 194220 3323400 2726700 2679400 2067700 5225000 4686100 3611500 3245800 2 2 1 2 2 2 2 2 2 2 2 316130000 0 316130000 18788 1370 17255 95387 115542;115543 115542 1839;1840;1841 2 THMQDLK Oxidation (M) 887.4171 0.41710179 1838 Q16181;Q16181-2;O43236;O43236-5;O43236-2;O43236-3;O43236-4 SEPT7;SEPT4 Septin-7;Septin-4 yes no 0 0 1 0 By MS/MS 3 0 1 1 26.89 26.597 3 0.036871 7745 20211116_3441_TMUAki_TMT10x_S_F3 54.408 17.715 78226 137840 4349.2 99911 89982 95220 109240 77845 74780 73006 97604 72868 128480 10703 104530 87027 96903 108730 79879 78393 71501 93449 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78226 137840 4349.2 99911 89982 95220 109240 77845 74780 73006 97604 72868 128480 10703 104530 87027 96903 108730 79879 78393 71501 93449 1 1 1 1 1 1 1 1 1 1 1 2795100 0 2795100 18789 1838 17256 95388 115544 115544 2451 1 THMVVANTMEDFQK 2 Oxidation (M) 1681.744 0.74399159 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 2 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 34.369 34.438 3 2.8855E-06 7244 20211116_3434_TMUAki_TMT10x_P_F6 106.58 105.97 398830 634570 2600.6 762390 990900 937230 573250 571460 679990 471510 678220 371350 592600 39232 771350 939620 935780 606610 596480 687040 464620 654310 5 5 2 5 5 5 5 5 5 5 5 298430 453940 742.66 542760 894070 846180 471890 419070 509790 346330 482360 277860 423910 31295 551970 846550 833720 501910 445460 516000 341240 466170 3 3 1 3 3 3 3 3 3 3 3 100400 180630 1858 219630 96834 91044 101360 152390 170200 125180 195860 93492 168690 7937.2 219380 93075 102060 104710 151030 171050 123380 188140 2 2 1 2 2 2 2 2 2 2 2 74168000 59826000 14341000 18790 542 17257 95389;95390;95391;95392;95393 115545;115546;115547;115548;115549;115550 115547 477;478 6 THNSSLEYNIFEGMECR Oxidation (M) 2101.8833 0.88333862 1852 Q16555;Q16555-2 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 1 0 By MS/MS By MS/MS 5.5 0.957 1 2 2 1 2 4 43.68 43.903 3;4 8.3207E-06 13992 20211116_3435_TMUAki_TMT10x_P_F7 95.001 88.969 4661700 7699200 44111 8819300 6189600 7455700 5085200 6661000 7357300 5997000 7148300 4340700 7188400 354290 8897600 5908500 7661600 5286200 6792700 7378000 5884300 6902100 6 6 4 6 6 6 6 6 6 6 6 2209700 3485900 14676 3573300 4148600 5325600 3098000 3087400 3399000 2813300 3051500 2057400 3253000 203840 3665400 3951100 5267000 3206700 3243800 3432400 2758900 2954400 3 3 2 3 3 3 3 3 3 3 3 2452000 4213300 29435 5246000 2041000 2130000 1987200 3573700 3958300 3183700 4096800 2283300 3935300 150450 5232300 1957400 2394600 2079500 3548900 3945600 3125400 3947700 3 3 2 3 3 3 3 3 3 3 3 1090200000 641560000 448610000 18791 1852 17258 95394;95395;95396;95397;95398;95399 115551;115552;115553;115554;115555;115556 115553 2467 6 THNSSLEYNIFEGMECR Unmodified 2085.8884 0.888424 1852 Q16555;Q16555-2 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 6.75 0.433 1 3 1 3 56.605 57.13 3 4.3302E-15 16770 20211116_3445_TMUAki_TMT10x_S_F6 127.61 121.88 1709100 2913400 0 2879000 1872800 1742200 1794400 2357000 2030400 2073100 2320000 1590800 2718400 77662 2922500 1789400 1858800 1831500 2356900 2065500 2036400 2229000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1709100 2913400 0 2879000 1872800 1742200 1794400 2357000 2030400 2073100 2320000 1590800 2718400 77662 2922500 1789400 1858800 1831500 2356900 2065500 2036400 2229000 1 1 0 1 1 1 1 1 1 1 1 395440000 0 395440000 18792 1852 17258 95400;95401;95402;95403 115557;115558;115559;115560 115558 4 THNVHVEIEQR Unmodified 1360.6848 0.68476088 2027 Q6WCQ1;Q6WCQ1-3;Q6WCQ1-2 MPRIP Myosin phosphatase Rho-interacting protein yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 27.246 26.986 3;4 1.225E-06 7936 20211116_3441_TMUAki_TMT10x_S_F3 122.52 100.89 196680 328050 5547.1 262700 269070 257370 184140 209140 226700 193650 239590 183160 305860 20892 272530 256090 261440 192540 214610 229230 189770 230730 3 3 2 3 3 3 3 3 3 3 3 71979 127530 0 106920 87617 115730 69757 66681 66302 56977 93220 67007 118920 4588.6 110670 83458 116250 71585 69982 68557 56047 89093 1 1 0 1 1 1 1 1 1 1 1 124710 200510 5547.1 155780 181450 141640 114380 142460 160400 136680 146370 116150 186930 16303 161870 172640 145180 120950 144630 160670 133720 141640 2 2 2 2 2 2 2 2 2 2 2 19327000 5776100 13551000 18793 2027 17259 95404;95405;95406;95407 115561;115562;115563 115563 3 THPHFVIPYR Unmodified 1265.6669 0.66692597 499 P05067;P05067-4;P05067-8;P05067-10;P05067-3;P05067-5;P05067-6;P05067-7;P05067-11;P05067-9;P05067-2 APP Amyloid beta A4 protein;N-APP;Soluble APP-alpha;Soluble APP-beta;C99;Beta-amyloid protein 42;Beta-amyloid protein 40;C83;P3(42);P3(40);C80;Gamma-secretase C-terminal fragment 59;Gamma-secretase C-terminal fragment 57;Gamma-secretase C-terminal fragment 50;C31 yes no 0 0 0 0 By MS/MS By MS/MS 1.4 0.49 3 2 4 1 35.7 35.603 3;4 0.0005654 9728 20211116_3429_TMUAki_TMT10x_P_F2 88.496 75.295 2562000 3917900 56171 4543100 5488800 5258700 3386900 3120600 3385100 2931000 3466000 2385900 3658100 305750 4601200 5213500 5265000 3545300 3275000 3446700 2870400 3341000 5 5 5 5 5 5 5 5 5 5 5 2432900 3709300 53485 4326300 5356000 5123300 3260800 2966400 3207100 2781300 3305000 2265700 3463500 292490 4381900 5086200 5121700 3415500 3119300 3268500 2724000 3185200 4 4 4 4 4 4 4 4 4 4 4 129050 208570 2685.3 216750 132760 135360 126080 154220 178070 149740 161010 120180 194650 13254 219330 127290 143340 129850 155710 178280 146430 155840 1 1 1 1 1 1 1 1 1 1 1 227470000 200430000 27044000 18794 499 17260 95408;95409;95410;95411;95412 115564;115565;115566;115567;115568 115566 5 THPSAAVPVCPR Unmodified 1290.6503 0.65028963 1883 Q3KQU3;Q3KQU3-2 MAP7D1 MAP7 domain-containing protein 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 29.493 29.23 3 0.010476 8755 20211116_3441_TMUAki_TMT10x_S_F3 62.705 27.937 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18795 1883 17261 95413 115569 115569 1 THPVEIFYTPEPERDYLEAAIR Unmodified 2645.3126 0.31256695 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 0 1 By MS/MS By MS/MS 3.33 0.943 2 3 3 1 5 4 65.794 65.642 3;4 1.767E-11 20740 20211116_3431_TMUAki_TMT10x_P_F4 120.75 90.678 174460000 260200000 7643200 313820000 173960000 267690000 189300000 153190000 152700000 164760000 198090000 162490000 242990000 21254000 315670000 167630000 272970000 190080000 161880000 158560000 160440000 189690000 16 16 12 16 16 16 16 16 16 16 16 124340000 186050000 4471400 221280000 124240000 213930000 136910000 104550000 104770000 111960000 138120000 115800000 173730000 14237000 223140000 119700000 215930000 137220000 112040000 109180000 109040000 132210000 9 9 6 9 9 9 9 9 9 9 9 50121000 74149000 3171700 92537000 49726000 53756000 52392000 48643000 47931000 52800000 59972000 46691000 69258000 7016400 92524000 47933000 57040000 52866000 49839000 49384000 51396000 57480000 7 7 6 7 7 7 7 7 7 7 7 7860200000 4101200000 3759000000 18796 196 17262 95414;95415;95416;95417;95418;95419;95420;95421;95422 115570;115571;115572;115573;115574;115575;115576;115577;115578;115579;115580;115581;115582;115583 115574 14 THPVHPELVSGTFLCLDCQTVIR Unmodified 2678.3309 0.33087633 1716 Q14566 MCM6 DNA replication licensing factor MCM6 yes yes 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 59.252 59.668 4 8.8778E-21 19172 20211116_3435_TMUAki_TMT10x_P_F7 148.38 136.76 16834000 30090000 238630 27585000 21338000 28838000 20496000 23487000 21448000 22434000 25154000 15676000 28068000 1639100 28337000 20451000 29181000 20864000 24119000 21910000 21953000 24151000 5 5 3 5 5 5 5 5 5 5 5 8085200 14397000 161450 12789000 9990600 19051000 10161000 11772000 10365000 10102000 11623000 7529300 13428000 847470 13254000 9593500 18858000 10304000 12286000 10580000 9935000 11173000 2 2 2 2 2 2 2 2 2 2 2 8749200 15693000 77177 14797000 11348000 9786900 10335000 11716000 11083000 12332000 13532000 8146600 14640000 791660 15083000 10857000 10323000 10560000 11833000 11329000 12018000 12978000 3 3 1 3 3 3 3 3 3 3 3 1992700000 815380000 1177300000 18797 1716 17263 95423;95424;95425 115584;115585;115586;115587;115588 115584 5 THQALGILSK Unmodified 1066.6135 0.61349341 1006 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 0 0 By MS/MS 8 0 1 1 40.599 40.834 3 0.0053508 10379 20211116_3436_TMUAki_TMT10x_P_F8 66.498 54.632 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18798 1006 17264 95426 115589 115589 1 THSDQFLVAFK Unmodified 1291.6561 0.65608651 949;950 P36542;P36542-2 ATP5C1 ATP synthase subunit gamma, mitochondrial no no 0 0 0 0 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 53.132 53.373 3 5.8958E-06 17150 20211116_3446_TMUAki_TMT10x_S_F7 113.69 95.955 34799000 57225000 447080 62915000 46372000 51622000 37115000 39020000 35961000 33134000 42836000 32404000 53418000 3388700 63613000 44253000 53002000 38095000 40133000 36879000 32603000 41109000 7 7 5 7 7 7 7 7 7 7 7 20958000 33534000 233950 36956000 31594000 39104000 24331000 22880000 21558000 19288000 24557000 19515000 31304000 2029500 37492000 30120000 39340000 24974000 23974000 22159000 18986000 23597000 4 4 2 4 4 4 4 4 4 4 4 13841000 23691000 213130 25959000 14778000 12518000 12783000 16140000 14403000 13845000 18278000 12889000 22115000 1359300 26121000 14133000 13663000 13121000 16159000 14719000 13617000 17512000 3 3 3 3 3 3 3 3 3 3 3 6299900000 3187100000 3112800000 18799 949;950 17265 95427;95428;95429;95430;95431;95432 115590;115591;115592;115593;115594;115595;115596 115595 7 THSDSKPYGPMSVGLDFSLPGMEHVYGIPEHADNLR Unmodified 3952.8513 0.85125722 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 1 By MS/MS 7 0 1 1 68.202 68.545 6 0.00093546 23462 20211116_3446_TMUAki_TMT10x_S_F7 52.455 48.381 2923500 5605500 159480 5336000 9247300 2770500 3908000 3978700 2589500 3105400 4500700 2723200 5229600 479580 5424300 8742200 3007800 4202400 3958200 2759800 3068900 4282500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2923500 5605500 159480 5336000 9247300 2770500 3908000 3978700 2589500 3105400 4500700 2723200 5229600 479580 5424300 8742200 3007800 4202400 3958200 2759800 3068900 4282500 1 1 1 1 1 1 1 1 1 1 1 404280000 0 404280000 18800 1730 17266 95433 115597 115597 1 THTMLGSPEQPGVIPR Oxidation (M) 1734.8723 0.87230365 1734 Q14807;Q14807-2 KIF22 Kinesin-like protein KIF22 yes no 0 0 1 0 By MS/MS By MS/MS 5.75 0.829 2 1 1 3 1 34.815 34.853 3 2.6178E-15 7324 20211116_3444_TMUAki_TMT10x_S_F5 150.81 122.05 481580 862290 6598.7 881870 653850 617860 442020 756920 868570 680660 797440 448440 804680 47006 894320 621920 648840 472640 760280 862430 667910 771460 4 4 2 4 4 4 4 4 4 4 4 149730 238310 0 268410 335380 320320 185090 163850 200760 183060 199710 139400 222480 13530 272470 317700 319610 196080 175070 203510 178000 192690 2 2 0 2 2 2 2 2 2 2 2 331850 623990 6598.7 613460 318480 297530 256930 593070 667820 497600 597730 309030 582210 33475 621850 304230 329240 276550 585220 658920 489910 578780 2 2 2 2 2 2 2 2 2 2 2 168190000 97317000 70871000 18801 1734 17267 95434;95435;95436;95437 115598;115599;115600;115601;115602 115601 2330 5 THTMLGSPEQPGVIPR Unmodified 1718.8774 0.87738903 1734 Q14807;Q14807-2 KIF22 Kinesin-like protein KIF22 yes no 0 0 0 0 By MS/MS 7 0 1 1 39.241 39.68 3 2.4007E-10 11230 20211116_3435_TMUAki_TMT10x_P_F7 120.92 100.26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18802 1734 17267 95438 115603 115603 1 THTQDAVPLTLGQEFSGYVQQVK Unmodified 2545.2813 0.28126682 547 P07954;P07954-2 FH Fumarate hydratase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 7.25 0.661 1 4 3 4 4 71.625 71.781 3;4 1.762E-28 24786 20211116_3446_TMUAki_TMT10x_S_F7 177.08 156.34 72086000 123850000 267990 92882000 82472000 183620000 91597000 176590000 141540000 142980000 110010000 67115000 115450000 5290500 98298000 79275000 181300000 93980000 178900000 140690000 141030000 107100000 11 11 4 11 11 11 11 11 11 11 11 57142000 96552000 117180 70896000 59327000 159140000 69178000 150920000 113380000 119310000 85494000 53201000 89997000 3902100 75457000 57099000 156500000 71024000 152910000 112420000 117830000 83337000 8 8 3 8 8 8 8 8 8 8 8 14944000 27295000 150800 21985000 23145000 24477000 22419000 25675000 28163000 23671000 24519000 13914000 25449000 1388500 22841000 22176000 24809000 22956000 25984000 28270000 23200000 23765000 3 3 1 3 3 3 3 3 3 3 3 11484000000 5751500000 5732300000 18803 547 17268 95439;95440;95441;95442;95443;95444;95445;95446 115604;115605;115606;115607;115608;115609;115610;115611 115608 8 THTYYQVLIDAR Unmodified 1478.7518 0.75177781 3248 Q9Y2S7 POLDIP2 Polymerase delta-interacting protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 46.235 46.763 3 1.185E-07 14538 20211116_3446_TMUAki_TMT10x_S_F7 132.79 71.111 5760700 9597100 78880 11426000 8036100 8693200 6119400 7851700 7463600 6854900 7601900 5364300 8961900 575570 11487000 7661500 9005700 6349000 7995700 7539000 6735900 7329000 4 4 3 4 4 4 4 4 4 4 4 2614400 4234100 67165 4640000 5095900 6184300 3750600 3688300 3444600 3330400 3536500 2434800 3952400 314100 4728000 4856400 6148800 3865300 3865300 3520900 3267400 3408700 2 2 2 2 2 2 2 2 2 2 2 3146300 5363000 11716 6786400 2940200 2508800 2368800 4163400 4019000 3524500 4065300 2929500 5009600 261470 6758800 2805100 2856900 2483700 4130500 4018100 3468500 3920300 2 2 1 2 2 2 2 2 2 2 2 662260000 451890000 210370000 18804 3248 17269 95447;95448;95449 115612;115613;115614;115615;115616 115616 5 THVADFAPEVAWVTR Unmodified 1697.8526 0.85255449 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 0 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 61.631 61.908 3 5.4996E-10 18685 20211116_3445_TMUAki_TMT10x_S_F6 134.02 121.19 24676000 42328000 565000 40124000 32323000 45452000 32400000 32586000 29209000 31317000 34184000 22980000 39489000 2663800 41169000 31028000 45686000 32761000 33742000 30031000 30638000 32822000 8 8 6 8 8 8 8 8 8 8 8 15515000 27316000 490160 25635000 21952000 35828000 23207000 21162000 18925000 20153000 21569000 14449000 25483000 1833200 26423000 21110000 35541000 23342000 22226000 19534000 19724000 20725000 5 5 5 5 5 5 5 5 5 5 5 9161100 15012000 74834 14489000 10371000 9624400 9192100 11424000 10284000 11164000 12616000 8530300 14006000 830540 14745000 9918000 10145000 9419400 11516000 10497000 10914000 12098000 3 3 1 3 3 3 3 3 3 3 3 3647200000 2105000000 1542200000 18805 542 17270 95450;95451;95452;95453;95454 115617;115618;115619;115620;115621;115622;115623;115624 115622 8 THVNPMDEEENEVNHVNGEQENR Oxidation (M) 2735.1478 0.14776282 2262 Q8TAF3;Q8TAF3-5;Q8TAF3-4;Q8TAF3-3 WDR48 WD repeat-containing protein 48 yes no 0 0 1 0 By MS/MS 1 0 1 1 29.74 29.805 4 6.9183E-16 7890 20211116_3439_TMUAki_TMT10x_S_F1 136.64 129.61 12165 21970 0 29863 14197 7539.2 10573 16952 31028 18079 23687 11327 20530 0 29574 13521 9269 11547 16795 30410 17610 23078 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12165 21970 0 29863 14197 7539.2 10573 16952 31028 18079 23687 11327 20530 0 29574 13521 9269 11547 16795 30410 17610 23078 1 1 0 1 1 1 1 1 1 1 1 3739400 0 3739400 18806 2262 17271 95455 115625 115625 2642 1 THYDPPR Unmodified 884.41407 0.41406533 894;1247 P31943;P55795 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 no no 0 0 0 0 By MS/MS 3 0 1 1 25.568 25.268 3 0.051523 7235 20211116_3441_TMUAki_TMT10x_S_F3 45.718 30.567 53108 92186 0 68387 65825 50709 63019 49417 58931 52960 65125 49439 85930 3433.3 71182 62971 52721 63943 50415 60351 51578 62632 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 53108 92186 0 68387 65825 50709 63019 49417 58931 52960 65125 49439 85930 3433.3 71182 62971 52721 63943 50415 60351 51578 62632 1 1 0 1 1 1 1 1 1 1 1 1995400 0 1995400 18807 894;1247 17272 95456 115626 115626 1 THYDPPRK Unmodified 1012.509 0.50902834 894;1247 P31943;P55795 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 no no 0 0 0 1 By MS/MS By MS/MS 5.25 0.433 3 1 2 2 25.098 25.136 3;4 0.045552 5266 20211116_3433_TMUAki_TMT10x_P_F5 52.403 38.74 1110700 1703000 21211 1376100 1158700 1610700 1217800 1127100 998630 936490 1239600 1034300 1587800 108350 1430400 1113500 1615500 1225400 1164600 1034100 922480 1188300 3 3 2 3 3 3 3 3 3 3 3 214090 346990 1643.6 314010 241850 341630 235880 175090 190330 187520 233760 199320 323650 15500 323080 231580 342590 238160 186800 197160 182630 224150 2 2 1 2 2 2 2 2 2 2 2 896570 1356000 19567 1062100 916880 1269000 981970 951980 808300 748980 1005800 834940 1264200 92852 1107400 881970 1272900 987270 977830 836910 739850 964190 1 1 1 1 1 1 1 1 1 1 1 68857000 22400000 46457000 18808 894;1247 17273 95457;95458;95459;95460 115627;115628;115629 115628 3 THYQADIER Unmodified 1131.5309 0.530886 437 O95573 ACSL3 Long-chain-fatty-acid--CoA ligase 3 yes yes 0 0 0 0 By MS/MS 3 0 1 1 28.074 27.791 3 0.10227 8242 20211116_3441_TMUAki_TMT10x_S_F3 28.577 16.622 168000 275100 949.22 237630 184360 183250 235910 131070 116140 133020 207390 156430 256550 15042 244250 178120 188870 232890 135960 126630 129830 197230 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 168000 275100 949.22 237630 184360 183250 235910 131070 116140 133020 207390 156430 256550 15042 244250 178120 188870 232890 135960 126630 129830 197230 1 1 1 1 1 1 1 1 1 1 1 1967900 0 1967900 18809 437 17274 95461 115630 115630 1 THYRLELMEK Oxidation (M) 1334.6653 0.66527099 1550 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 1 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 33.985 34.054 4 0.00044154 7074 20211116_3444_TMUAki_TMT10x_S_F5 99.283 79.496 3863600 6528500 2608.2 5721700 7495400 6514700 4343000 5519400 4996800 4631500 5224500 3596600 6088800 267130 5906000 7101000 6565500 4590400 5635400 5062800 4560000 5032800 5 5 1 5 5 5 5 5 5 5 5 2611000 4425600 0 3726300 5621500 5330900 3084400 3790100 3405500 3167100 3456500 2430400 4126900 165350 3874900 5320300 5297200 3271200 3912600 3452200 3118900 3332700 2 2 0 2 2 2 2 2 2 2 2 1252600 2103000 2608.2 1995400 1873900 1183800 1258600 1729300 1591300 1464400 1768100 1166200 1961900 101770 2031100 1780600 1268300 1319100 1722800 1610600 1441100 1700100 3 3 1 3 3 3 3 3 3 3 3 399950000 326840000 73112000 18810 1550 17275 95462;95463;95464;95465 115631;115632;115633;115634 115634 2088 4 THYRLELMEK Unmodified 1318.6704 0.67035637 1550 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 39.327 39.417 4 0.061732 9251 20211116_3434_TMUAki_TMT10x_P_F6 45.879 26.093 3875600 5973400 0 6241300 6967500 6177900 4746500 2976200 3444700 3447500 5012500 3608000 5574900 289950 6347300 6620100 6225600 4890400 3201700 3617000 3347600 4786900 2 2 0 2 2 2 2 2 2 2 2 3553800 5424900 0 5662100 6602400 5876300 4358100 2586400 3053300 3093000 4520700 3308400 5062900 262890 5762800 6269400 5899200 4497500 2810900 3215400 2999900 4315500 1 1 0 1 1 1 1 1 1 1 1 321780 548570 0 579180 365140 301570 388450 389780 391430 354520 491880 299610 511990 27064 584550 350680 326330 392890 390800 401650 347690 471390 1 1 0 1 1 1 1 1 1 1 1 130230000 106640000 23593000 18811 1550 17275 95466;95467 115635 115635 1 TIAALLPCLLDK Unmodified 1326.7581 0.75810874 1953 Q5VYK3 ECM29 Proteasome-associated protein ECM29 homolog yes yes 0 0 0 0 By MS/MS By matching 2 0 3 2 1 79.902 79.884 2;3 2.0055E-07 27697 20211116_3429_TMUAki_TMT10x_P_F2 135.99 81.379 6177300 9339800 107160 8781800 6333800 10710000 6858700 5371600 4430400 5916500 6929200 5752100 8712900 562140 9027100 6089500 10672000 6854400 5747200 4702100 5755900 6607000 2 2 1 2 2 2 2 2 2 2 2 6177300 9339800 107160 8781800 6333800 10710000 6858700 5371600 4430400 5916500 6929200 5752100 8712900 562140 9027100 6089500 10672000 6854400 5747200 4702100 5755900 6607000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1816200000 1357100000 459140000 18812 1953 17276 95468;95469;95470 115636;115637 115636 2 TIAECLADELINAAK Unmodified 1630.8236 0.82362212 1055 P46782 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 5.24 1.77 4 5 14 11 25 17 34 4 66 48 60.243 60.277 2;3 2.3453E-200 25961 20211116_3434_TMUAki_TMT10x_P_F6 469.67 396.17 771080000 1251500000 4544000 1211700000 794540000 972950000 827540000 589140000 439470000 635520000 855740000 717950000 1167600000 56708000 1235300000 762680000 997270000 825670000 619760000 478830000 618770000 812620000 109 110 54 110 109 111 109 109 110 109 111 407770000 645030000 1926600 635810000 343220000 607800000 401150000 309320000 232700000 334330000 441430000 379670000 601850000 28503000 648860000 330540000 614200000 398660000 330310000 251510000 325500000 419370000 65 66 36 66 65 67 65 65 66 65 67 363310000 606430000 2617400 575870000 451320000 365150000 426390000 279820000 206770000 301190000 414310000 338280000 565750000 28205000 586490000 432150000 383070000 427010000 289450000 227320000 293280000 393250000 44 44 18 44 44 44 44 44 44 44 44 209380000000 103740000000 105640000000 18813 1055 17277 95471;95472;95473;95474;95475;95476;95477;95478;95479;95480;95481;95482;95483;95484;95485;95486;95487;95488;95489;95490;95491;95492;95493;95494;95495;95496;95497;95498;95499;95500;95501;95502;95503;95504;95505;95506;95507;95508;95509;95510;95511;95512;95513;95514;95515;95516;95517;95518;95519;95520;95521;95522;95523;95524;95525;95526;95527;95528;95529;95530;95531;95532;95533;95534;95535;95536;95537;95538;95539;95540;95541;95542;95543;95544;95545;95546;95547;95548;95549;95550;95551;95552;95553;95554;95555;95556;95557;95558;95559;95560;95561;95562;95563;95564;95565;95566;95567;95568;95569;95570;95571;95572;95573;95574;95575;95576;95577;95578;95579;95580;95581;95582;95583;95584 115638;115639;115640;115641;115642;115643;115644;115645;115646;115647;115648;115649;115650;115651;115652;115653;115654;115655;115656;115657;115658;115659;115660;115661;115662;115663;115664;115665;115666;115667;115668;115669;115670;115671;115672;115673;115674;115675;115676;115677;115678;115679;115680;115681;115682;115683;115684;115685;115686;115687;115688;115689;115690;115691;115692;115693;115694;115695;115696;115697;115698;115699;115700;115701;115702;115703;115704;115705;115706;115707;115708;115709;115710;115711;115712;115713;115714;115715;115716;115717;115718;115719;115720;115721;115722;115723;115724;115725;115726;115727;115728;115729;115730;115731;115732;115733;115734;115735;115736;115737;115738;115739;115740;115741;115742;115743;115744;115745;115746;115747;115748;115749;115750;115751;115752;115753;115754;115755;115756;115757;115758;115759;115760;115761;115762;115763;115764;115765;115766;115767;115768;115769;115770;115771;115772 115689 135 TIAFLLPMFR Unmodified 1207.6787 0.67873621 2049 Q7L014 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 0 0 0 0 By MS/MS 8 0 1 1 80.774 80.779 2 0.0033869 26736 20211116_3436_TMUAki_TMT10x_P_F8 79.906 46.644 1570100 2320700 25241 2477600 1954200 2648200 2113200 1206600 1201500 1331100 1724400 1462100 2166100 159080 2519100 1879300 2654900 2106900 1303200 1280800 1294900 1647300 1 1 1 1 1 1 1 1 1 1 1 1570100 2320700 25241 2477600 1954200 2648200 2113200 1206600 1201500 1331100 1724400 1462100 2166100 159080 2519100 1879300 2654900 2106900 1303200 1280800 1294900 1647300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 246540000 246540000 0 18814 2049 17278 95585 115773 115773 1 TIAIIAEGIPEALTR Unmodified 1566.8981 0.8981077 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 0 By MS/MS By MS/MS 5.88 1.22 3 3 4 5 1 10 6 70.529 70.558 2;3 3.4666E-34 25043 20211116_3434_TMUAki_TMT10x_P_F6 236.65 199.97 62929000 99931000 430390 93429000 69786000 82889000 73661000 59676000 56589000 65739000 73524000 58591000 93222000 5022000 95614000 66993000 84570000 73986000 62027000 58918000 63955000 70402000 12 12 5 12 12 12 12 12 12 12 12 28284000 45569000 75753 43194000 28083000 48444000 31607000 28143000 26042000 30645000 32846000 26332000 42512000 1884000 44311000 26987000 48572000 31703000 29713000 26978000 29826000 31475000 7 7 2 7 7 7 7 7 7 7 7 34645000 54362000 354640 50235000 41702000 34445000 42054000 31533000 30547000 35095000 40678000 32260000 50710000 3138100 51303000 40006000 35999000 42283000 32314000 31940000 34128000 38927000 5 5 3 5 5 5 5 5 5 5 5 21044000000 9140100000 11904000000 18815 1200 17279 95586;95587;95588;95589;95590;95591;95592;95593;95594;95595;95596;95597;95598;95599;95600;95601 115774;115775;115776;115777;115778;115779;115780;115781;115782;115783;115784;115785;115786;115787 115776 14 TIALNGVEDVR Unmodified 1185.6354 0.63535107 1890 Q3ZCQ8-2;Q3ZCQ8;Q3ZCQ8-3 TIMM50 Mitochondrial import inner membrane translocase subunit TIM50 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 48.453 48.253 2 3.0913E-05 16448 20211116_3441_TMUAki_TMT10x_S_F3 104.07 56.872 2921200 4482300 27254 5392300 3665500 3689000 2719200 3198500 3326300 2765400 3866000 2720100 4185800 275290 5411300 3492300 3852100 2826400 3263800 3376500 2718700 3712700 2 2 1 2 2 2 2 2 2 2 2 1451200 2126200 0 2612000 2521300 2643500 1649800 1435300 1393400 1290000 1825600 1351200 1985800 132580 2630900 2395400 2663900 1711100 1516000 1444100 1265800 1747700 1 1 0 1 1 1 1 1 1 1 1 1470000 2356000 27254 2780200 1144200 1045500 1069400 1763200 1932900 1475400 2040400 1368900 2200000 142710 2780400 1096900 1188200 1115400 1747800 1932400 1452800 1965000 1 1 1 1 1 1 1 1 1 1 1 140440000 75634000 64810000 18816 1890 17280 95602;95603 115788;115789 115789 2 TIAMDGTEGLVR Oxidation (M) 1277.6286 0.62855113 518 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 2.6 1.02 2 2 4 2 6 4 40.312 40.293 2;3 3.4272E-16 11690 20211116_3430_TMUAki_TMT10x_P_F3 202.96 165.24 10410000 16016000 33387 18048000 19308000 19615000 11553000 15861000 19343000 13248000 15580000 9691300 14952000 790340 18292000 18306000 19801000 12366000 16238000 19204000 13046000 15146000 9 9 2 9 9 9 9 9 9 9 9 6288100 9233200 33387 10187000 15404000 15974000 7786500 8950200 11295000 7869800 8969800 5854200 8619100 564630 10412000 14573000 15759000 8405100 9422100 11255000 7730500 8724900 6 6 2 6 6 6 6 6 6 6 6 4122000 6782900 0 7861000 3904900 3640400 3766600 6911200 8048000 5378200 6610400 3837100 6333200 225710 7880300 3733400 4042500 3960400 6815900 7949100 5315800 6421400 3 3 0 3 3 3 3 3 3 3 3 3588600000 2157800000 1430700000 18817 518 17281 95604;95605;95606;95607;95608;95609;95610;95611;95612;95613 115790;115791;115792;115793;115794;115795;115796;115797;115798;115799;115800;115801 115793 426 12 TIAMDGTEGLVR Unmodified 1261.6336 0.63363651 518 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3.4 1.02 1 2 1 1 3 2 50.174 50.085 2 5.2973E-15 14422 20211116_3431_TMUAki_TMT10x_P_F4 185.96 135.92 16634000 26325000 56298 31302000 24608000 20159000 19932000 11010000 11105000 11712000 19006000 15487000 24583000 1420600 31415000 23473000 21018000 20189000 11677000 11964000 11410000 18090000 4 4 2 4 4 4 4 4 4 4 4 9368100 14159000 11613 17650000 17735000 15775000 13401000 6052900 6112700 6375000 10672000 8721900 13225000 797830 17731000 16890000 15968000 13594000 6654500 6699400 6212900 10154000 2 2 1 2 2 2 2 2 2 2 2 7265800 12166000 44686 13652000 6872400 4384100 6530600 4956800 4991900 5337200 8333700 6765400 11358000 622790 13683000 6582700 5050700 6594500 5022300 5264300 5196900 7935700 2 2 1 2 2 2 2 2 2 2 2 2498400000 1817200000 681280000 18818 518 17281 95614;95615;95616;95617;95618 115802;115803;115804;115805;115806;115807 115804 6 TIANMFGSSEKETIELSPTGRPK Oxidation (M) 2508.253 0.25300316 2939 Q9NRZ9;Q9NRZ9-4;Q9NRZ9-3;Q9NRZ9-2;Q9NRZ9-6;Q9NRZ9-5 HELLS Lymphoid-specific helicase yes no 0 0 1 2 By matching By MS/MS 7.33 0.471 2 1 1 2 50.528 50.874 4 5.9254E-08 16198 20211116_3446_TMUAki_TMT10x_S_F7 98.74 77.54 3843100 8071900 46753 6715600 4326700 5624000 3078800 9837400 9853300 8005900 7588000 3578700 7526800 367770 6930500 4120000 5891400 3398000 9734500 9647200 7894500 7390000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3843100 8071900 46753 6715600 4326700 5624000 3078800 9837400 9853300 8005900 7588000 3578700 7526800 367770 6930500 4120000 5891400 3398000 9734500 9647200 7894500 7390000 2 2 1 2 2 2 2 2 2 2 2 1266700000 645500000 621160000 18819 2939 17282 95619;95620;95621 115808;115809 115808 3030 2 TIAPALVSK Unmodified 898.54877 0.54876789 520 P06733 ENO1 Alpha-enolase yes yes 0 0 0 0 By MS/MS By MS/MS 5.19 2.81 4 1 1 2 4 4 8 8 48.984 49.107 2;3 6.1294E-06 13700 20211116_3436_TMUAki_TMT10x_P_F8 163.32 132.75 196080000 301920000 6598800 300380000 267330000 284310000 224980000 228480000 219330000 222070000 248560000 182610000 281720000 22226000 306300000 255590000 289370000 230240000 234930000 224420000 217150000 238870000 20 20 11 20 20 20 20 20 20 20 20 111300000 167250000 3536200 167250000 176270000 205660000 131260000 125160000 121760000 122290000 136400000 103650000 156060000 12656000 171200000 168050000 205340000 135200000 131230000 124810000 119550000 131130000 9 9 4 9 9 9 9 9 9 9 9 84781000 134670000 3062500 133120000 91065000 78648000 93722000 103320000 97570000 99784000 112160000 78959000 125660000 9570200 135100000 87543000 84036000 95046000 103700000 99610000 97600000 107740000 11 11 7 11 11 11 11 11 11 11 11 25971000000 14443000000 11528000000 18820 520 17283 95622;95623;95624;95625;95626;95627;95628;95629;95630;95631;95632;95633;95634;95635;95636;95637 115810;115811;115812;115813;115814;115815;115816;115817;115818;115819;115820;115821;115822;115823;115824;115825;115826;115827;115828;115829;115830 115817 21 TIAPALVSKK Unmodified 1026.6437 0.64373091 520 P06733 ENO1 Alpha-enolase yes yes 0 0 0 1 By MS/MS 2 0 1 1 44.08 43.787 3 3.8579E-05 13078 20211116_3429_TMUAki_TMT10x_P_F2 96.64 78.101 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18821 520 17284 95638 115831 115831 1 TIAPCQK Unmodified 816.41637 0.41637351 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 By MS/MS 5 0 1 1 32.785 32.725 2 0.023524 7811 20211116_3433_TMUAki_TMT10x_P_F5 84.244 32.248 659250 1079900 2139.6 1101900 1417700 1268400 866620 642190 605230 561460 917130 613840 1007700 67273 1125000 1345600 1267800 899770 682120 638220 551670 875070 1 1 1 1 1 1 1 1 1 1 1 659250 1079900 2139.6 1101900 1417700 1268400 866620 642190 605230 561460 917130 613840 1007700 67273 1125000 1345600 1267800 899770 682120 638220 551670 875070 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23451000 23451000 0 18822 972 17285 95639 115832 115832 1 TIAPIIGR Unmodified 839.52289 0.52288749 2574 Q99459 CDC5L Cell division cycle 5-like protein yes yes 0 0 0 0 By MS/MS By MS/MS 5 3.29 2 1 2 2 3 44.895 44.981 2 0.0012924 11995 20211116_3428_TMUAki_TMT10x_P_F1 124.59 113.72 12875000 20737000 238070 21516000 17726000 18661000 14201000 15922000 15790000 14984000 17483000 11990000 19353000 1357300 21852000 16922000 19125000 14638000 16298000 16054000 14673000 16813000 5 5 5 5 5 5 5 5 5 5 5 5624800 8722800 65376 8987800 10326000 11600000 6643700 6909000 7005300 6309000 7535800 5237800 8140300 593110 9189400 9812500 11551000 6942700 7243300 7129700 6186400 7253100 2 2 2 2 2 2 2 2 2 2 2 7250500 12014000 172700 12528000 7399800 7060800 7557200 9013000 8784700 8675000 9947300 6752200 11213000 764150 12663000 7109700 7574200 7695400 9055100 8924400 8486400 9559800 3 3 3 3 3 3 3 3 3 3 3 856460000 519920000 336540000 18823 2574 17286 95640;95641;95642;95643;95644 115833;115834;115835;115836;115837 115833 5 TIAPLVASGAVQLI Unmodified 1351.8075 0.80750177 2644 Q9BRT9 GINS4 DNA replication complex GINS protein SLD5;DNA replication complex GINS protein SLD5, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 80.846 80.839 2 8.0667E-06 26727 20211116_3436_TMUAki_TMT10x_P_F8 103.55 74.803 4618800 7874000 31169 7551400 5780700 6950700 6641600 4486200 4775300 5146800 6269900 4300600 7346100 414440 7717500 5565400 7062600 6634000 4705400 4992800 4999500 6002100 3 3 1 3 3 3 3 3 3 3 3 1369600 2157000 0 2076100 1396700 2697600 1613800 1073300 1394500 1540600 1681500 1275200 2012400 108700 2133000 1344400 2673300 1618800 1187200 1438500 1485300 1613200 1 1 0 1 1 1 1 1 1 1 1 3249200 5717000 31169 5475300 4383900 4253100 5027800 3412800 3380800 3606300 4588300 3025500 5333700 305750 5584500 4221000 4389300 5015300 3518100 3554300 3514100 4388800 2 2 1 2 2 2 2 2 2 2 2 2079600000 1207900000 871700000 18824 2644 17287 95645;95646;95647;95648 115838;115839;115840 115838 3 TIAPQNAPR Unmodified 966.52468 0.52467841 3018 Q9NYF8;Q9NYF8-2;Q9NYF8-4;Q9NYF8-3 BCLAF1 Bcl-2-associated transcription factor 1 yes no 0 0 0 0 By MS/MS 5 0 1 1 29.896 29.828 2 0.0044343 6665 20211116_3433_TMUAki_TMT10x_P_F5 79.596 59.076 256970 470900 6557.6 441370 432760 538400 353670 244240 263000 232860 352500 239310 439290 29878 453810 413360 535890 360070 262830 274710 227900 337280 1 1 1 1 1 1 1 1 1 1 1 256970 470900 6557.6 441370 432760 538400 353670 244240 263000 232860 352500 239310 439290 29878 453810 413360 535890 360070 262830 274710 227900 337280 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13776000 13776000 0 18825 3018 17288 95649 115841 115841 1 TIAPQNAPRDESR Unmodified 1453.7274 0.72735397 3018 Q9NYF8;Q9NYF8-2;Q9NYF8-4;Q9NYF8-3 BCLAF1 Bcl-2-associated transcription factor 1 yes no 0 0 0 1 By MS/MS 3 0 1 1 27.716 27.432 3 0.00021091 8076 20211116_3441_TMUAki_TMT10x_S_F3 85.457 73.591 596240 1077500 0 911820 1622100 1148300 1393000 502680 600490 675720 942730 555160 1004800 0 945440 1549600 1140700 1400400 548850 657720 652820 898820 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 596240 1077500 0 911820 1622100 1148300 1393000 502680 600490 675720 942730 555160 1004800 0 945440 1549600 1140700 1400400 548850 657720 652820 898820 1 1 0 1 1 1 1 1 1 1 1 7519500 0 7519500 18826 3018 17289 95650 115842 115842 1 TIAQDYGVLK Unmodified 1106.5972 0.59717465 1533 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.71 1.03 2 4 4 4 7 7 53.931 54.208 2;3 1.0662E-14 15513 20211116_3445_TMUAki_TMT10x_S_F6 235.66 189.24 94972000 152040000 562890 173000000 186610000 199980000 113740000 170000000 182140000 139130000 162450000 88423000 141950000 8506800 175410000 177050000 201390000 121300000 173430000 181600000 137150000 157320000 18 18 10 18 18 18 18 18 18 18 18 47130000 75500000 373060 82593000 142100000 155810000 71368000 81373000 82588000 68229000 78533000 43881000 70476000 5097100 84853000 134470000 152540000 76437000 86098000 83385000 67178000 75884000 11 11 5 11 11 11 11 11 11 11 11 47842000 76538000 189830 90405000 44503000 44172000 42369000 88627000 99552000 70900000 83920000 44542000 71470000 3409700 90557000 42585000 48850000 44859000 87336000 98220000 69975000 81439000 7 7 5 7 7 7 7 7 7 7 7 19079000000 10953000000 8126600000 18827 1533 17290 95651;95652;95653;95654;95655;95656;95657;95658;95659;95660;95661;95662;95663;95664 115843;115844;115845;115846;115847;115848;115849;115850;115851;115852;115853;115854;115855;115856;115857;115858;115859;115860;115861 115857 19 TIAQDYGVLKADEGISFR Unmodified 1982.0109 0.010905622 1533 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 1 By MS/MS By MS/MS 5.25 1.56 2 4 4 2 2 2 11 5 58.502 58.539 3 3.2836E-63 21245 20211116_3442_TMUAki_TMT10x_S_F4 260.49 228.88 107760000 217840000 413340 100430000 263880000 319470000 187740000 360620000 313360000 272070000 240430000 100330000 202830000 10935000 114030000 251090000 312870000 198300000 361930000 310700000 269360000 234190000 21 21 12 21 21 21 21 21 21 21 21 47761000 91361000 99951 44539000 66821000 174130000 94605000 154930000 133490000 116230000 99990000 44468000 85074000 3874600 50682000 64747000 168970000 95713000 157330000 132910000 115110000 97494000 11 11 5 11 11 11 11 11 11 11 11 59998000 126480000 313390 55895000 197060000 145330000 93133000 205690000 179870000 155840000 140440000 55866000 117750000 7060700 63345000 186350000 143890000 102590000 204600000 177790000 154250000 136700000 10 10 7 10 10 10 10 10 10 10 10 45694000000 21517000000 24177000000 18828 1533 17291 95665;95666;95667;95668;95669;95670;95671;95672;95673;95674;95675;95676;95677;95678;95679;95680 115862;115863;115864;115865;115866;115867;115868;115869;115870;115871;115872;115873;115874;115875;115876;115877;115878;115879;115880;115881;115882;115883;115884 115876 23 TIATALEYVYK Unmodified 1270.6809 0.68090428 1434 P78537;P78537-2 BLOC1S1 Biogenesis of lysosome-related organelles complex 1 subunit 1 yes no 0 0 0 0 By MS/MS 8 0 1 1 75.326 75.22 2 4.2493E-14 23881 20211116_3447_TMUAki_TMT10x_S_F8 152.97 130.23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18829 1434 17292 95681 115885 115885 1 TIAVDFASEDIYDK Unmodified 1585.7512 0.75116869 1905 Q53GQ0 HSD17B12 Very-long-chain 3-oxoacyl-CoA reductase yes yes 0 0 0 0 By MS/MS 3 0 1 1 71.503 71.132 3 2.9286E-10 25736 20211116_3441_TMUAki_TMT10x_S_F3 121.76 105.13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18830 1905 17293 95682 115886 115886 1 TICAILENYQTEK Unmodified 1581.7709 0.77085827 1107 P49591 SARS Serine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 By MS/MS By MS/MS 6 1 1 2 3 4 5 5 68.446 68.635 2;3 9.5665E-44 21504 20211116_3445_TMUAki_TMT10x_S_F6 282.89 222.37 62681000 102510000 1488800 99423000 86078000 121240000 84895000 88105000 63366000 75191000 87177000 58372000 95638000 6782200 101970000 82588000 121420000 85508000 90865000 66251000 73967000 83360000 13 13 10 13 13 13 13 13 13 13 13 38588000 61462000 895630 59463000 52664000 94811000 57000000 55875000 39207000 46043000 52575000 35935000 57343000 4153800 61332000 50655000 93531000 57040000 58481000 41139000 45373000 50303000 7 7 5 7 7 7 7 7 7 7 7 24093000 41044000 593130 39959000 33414000 26430000 27895000 32230000 24160000 29147000 34603000 22437000 38295000 2628400 40639000 31933000 27890000 28468000 32384000 25112000 28594000 33057000 6 6 5 6 6 6 6 6 6 6 6 6877900000 4277900000 2600100000 18831 1107 17294 95683;95684;95685;95686;95687;95688;95689;95690;95691;95692 115887;115888;115889;115890;115891;115892;115893;115894;115895;115896;115897;115898;115899;115900 115897 14 TICSHVQNMIK Oxidation (M) 1345.6482 0.64824072 904 P32969 RPL9 60S ribosomal protein L9 yes yes 0 0 1 0 By MS/MS By MS/MS 4.5 3.2 2 1 1 2 3 3 33.208 33.435 3 3.2288E-05 7431 20211116_3436_TMUAki_TMT10x_P_F8 100.69 79.129 991590 1556000 12345 2279500 2717300 1377900 1151300 737580 699890 695560 1487400 923350 1454600 110440 2260900 2566700 1444900 1235700 780980 759720 681060 1410500 6 6 3 6 6 6 6 6 6 6 6 560110 859750 6003.4 1264600 2409900 1147100 852210 426040 385950 400440 831090 521560 803750 77587 1259700 2271900 1159600 931440 468790 428840 392150 787940 3 3 2 3 3 3 3 3 3 3 3 431490 696280 6341.2 1015000 307360 230770 299120 311550 313940 295120 656340 401800 650890 32851 1001200 294820 285270 304300 312190 330880 288910 622550 3 3 1 3 3 3 3 3 3 3 3 142650000 93973000 48681000 18832 904 17295 95693;95694;95695;95696;95697;95698 115901;115902;115903;115904;115905;115906 115903 1112 6 TICSHVQNMIK Unmodified 1329.6533 0.65332609 904 P32969 RPL9 60S ribosomal protein L9 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 40.709 40.786 3 5.4176E-07 10296 20211116_3436_TMUAki_TMT10x_P_F8 133.07 109.83 9726600 16200000 145200 23744000 29743000 17629000 12422000 9370800 9309400 8747000 14596000 9057200 15145000 1184600 23598000 28090000 18151000 13409000 9925700 9794500 8568500 13917000 6 6 5 6 6 6 6 6 6 6 6 5829900 9699900 53192 14571000 27109000 15640000 10479000 5817800 6010600 5641200 8677700 5428300 9069200 793510 14536000 25577000 15646000 11360000 6405500 6404900 5516800 8288500 3 3 2 3 3 3 3 3 3 3 3 3896700 6500400 92008 9173000 2634000 1989400 1943100 3553000 3298700 3105800 5918700 3628900 6075500 391130 9061800 2513800 2505000 2049100 3520200 3389500 3051700 5628500 3 3 3 3 3 3 3 3 3 3 3 1387900000 1176400000 211490000 18833 904 17295 95699;95700;95701;95702 115907;115908;115909;115910;115911;115912 115909 6 TIDAHGLMVLPGGVDVHTR Oxidation (M) 2003.0258 0.02584418 113 O14531 DPYSL4 Dihydropyrimidinase-related protein 4 yes yes 0 0 1 0 By MS/MS 6 0 1 1 48.92 49.016 4 0.0032963 13032 20211116_3434_TMUAki_TMT10x_P_F6 57.989 32.123 2679700 3630500 1850.3 4097700 5132300 5898100 3438000 3294400 3530600 2792900 3769400 2495000 3389400 247380 4174300 4877900 5839100 3578800 3465900 3596200 2748400 3628800 2 2 1 2 2 2 2 2 2 2 2 2679700 3630500 1850.3 4097700 5132300 5898100 3438000 3294400 3530600 2792900 3769400 2495000 3389400 247380 4174300 4877900 5839100 3578800 3465900 3596200 2748400 3628800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 433770000 433770000 0 18834 113 17296 95703 115913;115914 115914 91 2 TIDDLEDELYAQK Unmodified 1551.7304 0.73043325 527;525 P06753-6;P06753 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 0 By MS/MS 2 0 1 1 74.216 74.071 3 0.00014977 25416 20211116_3429_TMUAki_TMT10x_P_F2 85.258 70.286 1835900 2768200 18221 2709400 1932600 3675200 2121900 2058300 2017900 2028800 2211200 1709500 2582800 170540 2782600 1858900 3648200 2139300 2173500 2064200 1982700 2127100 1 1 1 1 1 1 1 1 1 1 1 1835900 2768200 18221 2709400 1932600 3675200 2121900 2058300 2017900 2028800 2211200 1709500 2582800 170540 2782600 1858900 3648200 2139300 2173500 2064200 1982700 2127100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 105940000 105940000 0 18835 527;525 17297 95704 115915 115915 1 TIDDLEDKLK Unmodified 1188.6238 0.62378333 526 P06753-2;P06753-5;P06753-7 TPM3 Tropomyosin alpha-3 chain yes no 0 0 0 1 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 59.494 59.503 3 1.2926E-07 17455 20211116_3444_TMUAki_TMT10x_S_F5 116.87 71.737 19514000 31876000 140710 36596000 52634000 39705000 23572000 31407000 36178000 24341000 33185000 18170000 29762000 2147400 37048000 49741000 40071000 25820000 32139000 36147000 24063000 32105000 4 4 1 4 4 4 4 4 4 4 4 11190000 17720000 0 20696000 43803000 31697000 16090000 17200000 19778000 13594000 18386000 10418000 16546000 1322900 21067000 41300000 31287000 17884000 18112000 19910000 13425000 17779000 2 2 0 2 2 2 2 2 2 2 2 8324000 14156000 140710 15901000 8830500 8008000 7482300 14206000 16400000 10746000 14799000 7751500 13216000 824550 15980000 8441500 8784200 7936200 14028000 16237000 10638000 14326000 2 2 1 2 2 2 2 2 2 2 2 771350000 531100000 240250000 18836 526 17298 95705;95706;95707 115916;115917;115918;115919;115920 115920 5 TIDFDAYSVGR Unmodified 1242.5881 0.58806652 1691 Q14194-2 CRMP1 Dihydropyrimidinase-related protein 1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 57.868 58.005 2 0.00013462 17653 20211116_3431_TMUAki_TMT10x_P_F4 93.448 55.21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18837 1691 17299 95708 115921 115921 1 TIDGQQTIIACIESHQFQPK Unmodified 2313.1423 0.1423305 1192 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.57 1.29 2 4 4 4 8 6 68.346 68.467 3;4 9.1693E-59 23364 20211116_3446_TMUAki_TMT10x_S_F7 241.52 218.64 95504000 161520000 1667300 166460000 115830000 139030000 111930000 103290000 90936000 104870000 121380000 88933000 150730000 9359600 169060000 111040000 142520000 113090000 106860000 94510000 102350000 116140000 17 17 11 17 17 17 17 17 17 17 17 40825000 63790000 482560 64892000 44106000 78169000 49721000 44204000 39067000 43359000 49315000 38015000 59527000 3791400 66321000 42455000 78051000 49811000 46632000 40574000 42381000 47255000 8 8 5 8 8 8 8 8 8 8 8 54678000 97729000 1184700 101570000 71729000 60858000 62204000 59082000 51869000 61509000 72060000 50917000 91206000 5568100 102740000 68589000 64469000 63275000 60232000 53936000 59973000 68889000 9 9 6 9 9 9 9 9 9 9 9 26094000000 13371000000 12723000000 18838 1192 17300 95709;95710;95711;95712;95713;95714;95715;95716;95717;95718;95719;95720;95721;95722 115922;115923;115924;115925;115926;115927;115928;115929;115930;115931;115932;115933;115934;115935;115936;115937;115938;115939;115940 115934 19 TIDLSNNKIESLPPLLIGK Unmodified 2064.1831 0.18305633 2213 Q8N9N7 LRRC57 Leucine-rich repeat-containing protein 57 yes yes 0 0 0 1 By MS/MS 2 0 1 1 77.757 77.725 3 2.274E-08 25587 20211116_3440_TMUAki_TMT10x_S_F2 109.42 96.707 2865200 4991000 71164 4524100 4184900 3625600 3794600 3122800 3141000 3780100 4358200 2668300 4655400 322350 4634800 4007200 3737700 3849200 3220100 3267200 3664700 4166500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2865200 4991000 71164 4524100 4184900 3625600 3794600 3122800 3141000 3780100 4358200 2668300 4655400 322350 4634800 4007200 3737700 3849200 3220100 3267200 3664700 4166500 1 1 1 1 1 1 1 1 1 1 1 531520000 0 531520000 18839 2213 17301 95723 115941 115941 1 TIDWVAFAEIIPQNQK Unmodified 1871.9781 0.97814893 372 O75947;O75947-2 ATP5H ATP synthase subunit d, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 80.265 80.273 3 2.1862E-05 26518 20211116_3436_TMUAki_TMT10x_P_F8 91.207 72.843 9600700 15353000 61309 15194000 9749800 12233000 11792000 5366200 5139000 6471100 10121000 8939200 14325000 801570 15468000 9400100 12491000 11649000 5835600 5695900 6274500 9609400 3 3 2 3 3 3 3 3 3 3 3 6230200 9487900 35820 9521400 5702800 8994100 7192000 3537000 3417700 4368700 6257200 5800800 8853400 488900 9703200 5504300 9072500 7100400 3896500 3742800 4232400 5948200 2 2 1 2 2 2 2 2 2 2 2 3370500 5864700 25489 5672900 4046900 3239100 4600200 1829200 1721300 2102500 3864100 3138400 5471700 312660 5764400 3895800 3418200 4548100 1939100 1953100 2042100 3661200 1 1 1 1 1 1 1 1 1 1 1 2877600000 2117500000 760030000 18840 372 17302 95724;95725;95726;95727 115942;115943;115944;115945 115943 4 TIEAEAAHGTVTR Unmodified 1354.6841 0.68409218 1083 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 29.931 29.789 3 7.9138E-27 8972 20211116_3441_TMUAki_TMT10x_S_F3 237.41 212.56 608030 995350 4010.5 1007300 777100 840520 640720 490030 565890 579060 742170 566150 928810 53959 1024300 741770 858680 654720 518580 585220 561870 710490 3 3 2 3 3 3 3 3 3 3 3 246180 371280 0 358010 373270 446050 250760 189040 215820 230150 275670 229200 346400 19633 367480 354670 443200 259680 206410 223210 223080 264080 1 1 0 1 1 1 1 1 1 1 1 361850 624060 4010.5 649320 403830 394470 389960 300980 350070 348920 466500 336950 582410 34326 656820 387100 415480 395040 312170 362010 338790 446410 2 2 2 2 2 2 2 2 2 2 2 128830000 43706000 85123000 18841 1083 17303 95728;95729;95730;95731 115946;115947;115948;115949 115949 4 TIECISLIGLAVGK Unmodified 1472.8273 0.82725094 84 O00410;O00410-2;O00410-3 IPO5 Importin-5 yes no 0 0 0 0 By MS/MS By MS/MS 3.36 2.87 3 5 3 6 5 80.399 80.383 2;3 7.2306E-30 27339 20211116_3429_TMUAki_TMT10x_P_F2 215.46 167.37 49382000 77166000 259130 71414000 51181000 68856000 55557000 38840000 35859000 47394000 55981000 45977000 71983000 3921100 73222000 49172000 69629000 55516000 41261000 38057000 45935000 53380000 10 10 5 10 10 10 10 10 10 10 10 24487000 38577000 85578 35051000 22642000 42936000 26515000 19452000 17934000 23523000 27520000 22797000 35983000 1644400 36125000 21784000 42726000 26427000 21085000 18961000 22806000 26251000 6 6 1 6 6 6 6 6 6 6 6 24895000 38589000 173550 36363000 28540000 25920000 29043000 19388000 17925000 23871000 28462000 23181000 36000000 2276700 37097000 27388000 26903000 29089000 20176000 19096000 23129000 27130000 4 4 4 4 4 4 4 4 4 4 4 6513800000 4426800000 2087100000 18842 84 17304 95732;95733;95734;95735;95736;95737;95738;95739;95740;95741;95742 115950;115951;115952;115953;115954;115955;115956;115957;115958;115959;115960 115952 11 TIEDAIAVLSVAEEAADR Unmodified 1871.9476 0.94763666 2427 Q96CT7 CCDC124 Coiled-coil domain-containing protein 124 yes yes 0 0 0 0 By MS/MS 2 0 1 1 82.096 82.085 2 0.014521 27316 20211116_3440_TMUAki_TMT10x_S_F2 57.434 38.857 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18843 2427 17305 95743 115961 115961 1 TIEDAIAVLSVAEEAADRHPERR Unmodified 2547.3041 0.30412753 2427 Q96CT7 CCDC124 Coiled-coil domain-containing protein 124 yes yes 0 0 0 2 By MS/MS By matching 4.33 0.471 2 1 1 2 76.022 76.013 5 7.7468E-28 25055 20211116_3431_TMUAki_TMT10x_P_F4 170.91 148.48 493320 966790 0 752020 626080 1377200 815970 764710 800230 749100 789070 459290 901310 37879 791700 604770 1350600 817260 807940 814390 732250 761540 1 1 0 1 1 1 1 1 1 1 1 493320 966790 0 752020 626080 1377200 815970 764710 800230 749100 789070 459290 901310 37879 791700 604770 1350600 817260 807940 814390 732250 761540 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1545400000 720420000 824960000 18844 2427 17306 95744;95745;95746 115962 115962 1 TIEDDLVSALVR Unmodified 1329.714 0.71399532 3333 Q9Y606;Q9Y606-2 PUS1 tRNA pseudouridine synthase A, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 78.582 78.542 2 4.3502E-15 25711 20211116_3428_TMUAki_TMT10x_P_F1 188.49 157.8 16141000 25731000 62985 24839000 17449000 20316000 18909000 13597000 12677000 15080000 18852000 15029000 24006000 1406700 25336000 16771000 20825000 18911000 14208000 13388000 14667000 17995000 4 4 3 4 4 4 4 4 4 4 4 9058000 13581000 49389 13064000 7879400 12487000 9895500 6987600 6715800 8093500 9584100 8434200 12671000 780490 13355000 7608800 12633000 9833600 7415200 7073100 7859000 9156600 2 2 2 2 2 2 2 2 2 2 2 7083200 12150000 13596 11776000 9569600 7828700 9013900 6609700 5960800 6986800 9267900 6595100 11336000 626180 11981000 9162100 8191400 9077700 6793100 6315100 6808100 8838100 2 2 1 2 2 2 2 2 2 2 2 2280700000 1030000000 1250700000 18845 3333 17307 95747;95748;95749;95750 115963;115964;115965;115966 115963 4 TIEGITVTVHMPK Oxidation (M) 1440.7647 0.76465068 3249 Q9Y2T2 AP3M1 AP-3 complex subunit mu-1 yes yes 0 0 1 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 45.788 46.035 3 0.00012476 12220 20211116_3445_TMUAki_TMT10x_S_F6 88.021 66.927 7521800 13024000 98735 13971000 10224000 8719400 6719500 8314300 7795200 7393700 10251000 7004000 12156000 715590 14107000 9718200 9197600 7032400 8446300 7970300 7259000 9812300 3 3 2 3 3 3 3 3 3 3 3 2362600 3856200 0 4394800 5229500 4925500 3193700 2821400 2574500 2423900 3232500 2199500 3600200 198160 4453300 4960700 4937800 3326800 2962900 2669600 2383700 3097900 1 1 0 1 1 1 1 1 1 1 1 5159200 9167400 98735 9576400 4994000 3793900 3525800 5492800 5220600 4969800 7018000 4804400 8555700 517440 9654100 4757600 4259800 3705600 5483300 5300700 4875300 6714400 2 2 2 2 2 2 2 2 2 2 2 744500000 234330000 510170000 18846 3249 17308 95751;95752;95753 115967;115968;115969 115968 3226 3 TIEKFEK Unmodified 893.48583 0.48583328 1416;1520 P68104;Q5VTE0;Q05639 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2 no no 0 0 0 1 By MS/MS By MS/MS 5.29 1.03 2 2 2 1 4 3 39.332 39.475 3 0.017338 9410 20211116_3444_TMUAki_TMT10x_S_F5 78.516 50.895 23431000 42103000 244450 25018000 40782000 49212000 28083000 31134000 31208000 28695000 32612000 21818000 39223000 2378200 27091000 38797000 48235000 29246000 32494000 31662000 28125000 31416000 8 8 6 8 8 8 8 8 8 8 8 18674000 33380000 165540 19608000 34126000 43244000 21623000 24613000 27026000 22798000 26160000 17389000 31095000 1886700 21329000 32415000 42178000 22754000 25910000 27227000 22341000 25262000 5 5 4 5 5 5 5 5 5 5 5 4757000 8723600 78910 5410000 6656000 5967800 6459700 6521100 4182500 5896100 6452300 4429800 8127700 491480 5761400 6381800 6057600 6492100 6583600 4435100 5784200 6154000 3 3 2 3 3 3 3 3 3 3 3 2713400000 1939600000 773790000 18847 1416;1520 17309 95754;95755;95756;95757;95758;95759;95760 115970;115971;115972;115973;115974;115975;115976;115977 115976 8 TIELDGK Unmodified 774.41233 0.41233399 2781;1367;1284 P61006;P61006-2;Q92930;P62820;P62820-3;Q9H0U4 RAB8A;RAB8B;RAB1A;RAB1B Ras-related protein Rab-8A;Ras-related protein Rab-8B;Ras-related protein Rab-1A;Ras-related protein Rab-1B no no 0 0 0 0 By matching By MS/MS 3.33 0.471 2 1 1 2 43.743 43.719 2 0.010793 14589 20211116_3441_TMUAki_TMT10x_S_F3 97.798 26.886 3351400 5785500 56073 5772300 3633900 3320000 3837700 3456600 3469100 3318300 4478400 3120900 5398400 334070 5852900 3492900 3536500 3870700 3503400 3581200 3246500 4288900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3351400 5785500 56073 5772300 3633900 3320000 3837700 3456600 3469100 3318300 4478400 3120900 5398400 334070 5852900 3492900 3536500 3870700 3503400 3581200 3246500 4288900 2 2 2 2 2 2 2 2 2 2 2 164420000 27639000 136780000 18848 1284;1367;2781 17310 95761;95762;95763 115978;115979 115978 2 TIEQNINNLNVSEADRK Unmodified 1956.9865 0.98648179 1746 Q15003;Q15003-2 NCAPH Condensin complex subunit 2 yes no 0 0 0 1 By MS/MS 5 0 1 1 46.631 46.795 3 2.5468E-22 12229 20211116_3444_TMUAki_TMT10x_S_F5 158.45 108.92 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18849 1746 17311 95764 115980 115980 1 TIEYLQPNPASR Unmodified 1387.7096 0.70957864 2616 Q99961;Q99962;Q99961-3 SH3GL1;SH3GL2 Endophilin-A2;Endophilin-A1 yes no 0 0 0 0 By MS/MS 5 0 1 1 45.878 46.032 2 7.3603E-05 11923 20211116_3444_TMUAki_TMT10x_S_F5 90.653 47.141 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18850 2616 17312 95765 115981 115981 1 TIFAYFTGSK Unmodified 1133.5757 0.57571092 2633 Q9BRA2 TXNDC17 Thioredoxin domain-containing protein 17 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.957 2 4 4 2 5 7 75.911 75.897 2;3 3.2497E-10 24954 20211116_3431_TMUAki_TMT10x_P_F4 197.27 143.78 51208000 87589000 300370 79009000 66065000 79835000 61572000 61948000 58685000 60794000 66520000 47679000 81698000 4360200 81221000 63227000 80877000 62601000 63853000 60106000 59422000 63927000 10 10 8 10 10 10 10 10 10 10 10 22459000 36644000 29699 32252000 25747000 48161000 27755000 25178000 26151000 26014000 26525000 20908000 34176000 1562400 33451000 24716000 47565000 27998000 26784000 26688000 25372000 25576000 4 4 2 4 4 4 4 4 4 4 4 28749000 50945000 270680 46757000 40318000 31674000 33817000 36770000 32534000 34780000 39995000 26770000 47521000 2797800 47770000 38512000 33312000 34602000 37069000 33419000 34050000 38351000 6 6 6 6 6 6 6 6 6 6 6 6823800000 3849900000 2974000000 18851 2633 17313 95766;95767;95768;95769;95770;95771;95772;95773;95774;95775;95776;95777 115982;115983;115984;115985;115986;115987;115988;115989;115990;115991;115992;115993;115994 115983 13 TIFLNKQPNPR Unmodified 1326.7408 0.74081919 3087 Q9UBT2;Q9UBT2-2 UBA2 SUMO-activating enzyme subunit 2 yes no 0 0 0 1 By MS/MS By MS/MS 4.33 0.943 1 2 2 1 40.42 40.474 3 6.5707E-05 9936 20211116_3444_TMUAki_TMT10x_S_F5 92.247 68.216 254170 387950 0 388500 577770 544310 317410 308890 316960 279240 349140 236640 362000 23505 398630 547310 539610 335560 325060 323620 273940 335800 1 1 0 1 1 1 1 1 1 1 1 254170 387950 0 388500 577770 544310 317410 308890 316960 279240 349140 236640 362000 23505 398630 547310 539610 335560 325060 323620 273940 335800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7814100 7814100 0 18852 3087 17314 95778;95779;95780 115995;115996;115997 115997 3 TIFQGIAAK Unmodified 947.54402 0.54401687 1170 P52209;P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 By MS/MS By MS/MS 2.8 2.64 2 2 1 3 2 57.207 57.013 2 6.0988E-06 16856 20211116_3428_TMUAki_TMT10x_P_F1 161.92 78.301 55647000 91339000 242800 99685000 116920000 113200000 66652000 90302000 91252000 78194000 87665000 51811000 85260000 5239100 101310000 110830000 113970000 70998000 92606000 91629000 76867000 84678000 8 8 4 8 8 8 8 8 8 8 8 32423000 52221000 92716 57251000 94950000 91652000 47250000 53356000 53720000 45843000 50505000 30186000 48746000 3229800 58564000 89821000 90386000 50622000 55957000 54254000 45083000 48820000 4 4 1 4 4 4 4 4 4 4 4 23224000 39118000 150080 42435000 21969000 21547000 19402000 36946000 37532000 32350000 37159000 21625000 36514000 2009300 42744000 21007000 23585000 20375000 36649000 37376000 31784000 35858000 4 4 3 4 4 4 4 4 4 4 4 3466600000 1962700000 1503900000 18853 1170 17315 95781;95782;95783;95784;95785 115998;115999;116000;116001;116002;116003;116004;116005;116006 115999 9 TIFVLTK Unmodified 820.50584 0.50584045 264 O60313;O60313-2;O60313-13;O60313-9;O60313-11;O60313-10 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 62.834 62.472 2 0.0041413 22243 20211116_3441_TMUAki_TMT10x_S_F3 114.93 29.084 6494800 10503000 11887 10449000 8916900 9988200 7209800 8859400 8402000 7905300 9167500 6047200 9800600 564050 10657000 8506500 10178000 7439400 9036100 8522600 7760100 8819900 2 2 1 2 2 2 2 2 2 2 2 2944400 4653800 11887 4741800 4609600 6131000 3728000 3914700 3819000 3566500 4072500 2741600 4342800 278510 4851900 4398500 6110400 3830400 4081600 3890200 3497600 3920800 1 1 1 1 1 1 1 1 1 1 1 3550400 5849600 0 5707600 4307300 3857100 3481800 4944800 4583000 4338800 5095000 3305600 5457800 285540 5805100 4108000 4068000 3609000 4954500 4632400 4262400 4899100 1 1 0 1 1 1 1 1 1 1 1 263760000 119630000 144130000 18854 264 17316 95786;95787;95788 116007;116008;116009 116009 3 TIGGGDDSFNTFFSETGAGK Unmodified 2006.8858 0.88576469 1417;2044;2007 P68363;P68363-2;Q71U36;Q71U36-2;Q9BQE3;P0DPH8;P0DPH7;P0DPH7-2;Q6PEY2 TUBA1B;TUBA1A;TUBA1C;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-3E chain no no 0 0 0 0 By MS/MS By MS/MS 5.53 1.51 4 6 29 42 82 68 101 16 167 181 62.257 62.299 2;3;4 4.8619E-104 23896 20211116_3445_TMUAki_TMT10x_S_F6 350.97 312.09 1002400000 1729800000 24929000 1606800000 1098200000 1591000000 1154800000 1014300000 1014800000 1066600000 1247600000 933510000 1613700000 100400000 1647700000 1055600000 1608800000 1164100000 1061900000 1046800000 1039500000 1196300000 384 384 187 384 384 384 384 384 384 384 384 667780000 1142900000 22084000 1058200000 684430000 1234000000 778170000 682440000 677520000 719480000 841120000 621920000 1066200000 73139000 1088100000 659800000 1233900000 781320000 722800000 699470000 701160000 806330000 200 200 111 200 200 200 200 200 200 200 200 334650000 586890000 2844800 548630000 413790000 356980000 376640000 331810000 337260000 347100000 406490000 311590000 547490000 27265000 559530000 395840000 374920000 382770000 339090000 347280000 338370000 389980000 184 184 76 184 184 184 184 184 184 184 184 827230000000 426190000000 401040000000 18855 1417;2044;2007 17317 95789;95790;95791;95792;95793;95794;95795;95796;95797;95798;95799;95800;95801;95802;95803;95804;95805;95806;95807;95808;95809;95810;95811;95812;95813;95814;95815;95816;95817;95818;95819;95820;95821;95822;95823;95824;95825;95826;95827;95828;95829;95830;95831;95832;95833;95834;95835;95836;95837;95838;95839;95840;95841;95842;95843;95844;95845;95846;95847;95848;95849;95850;95851;95852;95853;95854;95855;95856;95857;95858;95859;95860;95861;95862;95863;95864;95865;95866;95867;95868;95869;95870;95871;95872;95873;95874;95875;95876;95877;95878;95879;95880;95881;95882;95883;95884;95885;95886;95887;95888;95889;95890;95891;95892;95893;95894;95895;95896;95897;95898;95899;95900;95901;95902;95903;95904;95905;95906;95907;95908;95909;95910;95911;95912;95913;95914;95915;95916;95917;95918;95919;95920;95921;95922;95923;95924;95925;95926;95927;95928;95929;95930;95931;95932;95933;95934;95935;95936;95937;95938;95939;95940;95941;95942;95943;95944;95945;95946;95947;95948;95949;95950;95951;95952;95953;95954;95955;95956;95957;95958;95959;95960;95961;95962;95963;95964;95965;95966;95967;95968;95969;95970;95971;95972;95973;95974;95975;95976;95977;95978;95979;95980;95981;95982;95983;95984;95985;95986;95987;95988;95989;95990;95991;95992;95993;95994;95995;95996;95997;95998;95999;96000;96001;96002;96003;96004;96005;96006;96007;96008;96009;96010;96011;96012;96013;96014;96015;96016;96017;96018;96019;96020;96021;96022;96023;96024;96025;96026;96027;96028;96029;96030;96031;96032;96033;96034;96035;96036;96037;96038;96039;96040;96041;96042;96043;96044;96045;96046;96047;96048;96049;96050;96051;96052;96053;96054;96055;96056;96057;96058;96059;96060;96061;96062;96063;96064;96065;96066;96067;96068;96069;96070;96071;96072;96073;96074;96075;96076;96077;96078;96079;96080;96081;96082;96083;96084;96085;96086;96087;96088;96089;96090;96091;96092;96093;96094;96095;96096;96097;96098;96099;96100;96101;96102;96103;96104;96105;96106;96107;96108;96109;96110;96111;96112;96113;96114;96115;96116;96117;96118;96119;96120;96121;96122;96123;96124;96125;96126;96127;96128;96129;96130;96131;96132;96133;96134;96135;96136 116010;116011;116012;116013;116014;116015;116016;116017;116018;116019;116020;116021;116022;116023;116024;116025;116026;116027;116028;116029;116030;116031;116032;116033;116034;116035;116036;116037;116038;116039;116040;116041;116042;116043;116044;116045;116046;116047;116048;116049;116050;116051;116052;116053;116054;116055;116056;116057;116058;116059;116060;116061;116062;116063;116064;116065;116066;116067;116068;116069;116070;116071;116072;116073;116074;116075;116076;116077;116078;116079;116080;116081;116082;116083;116084;116085;116086;116087;116088;116089;116090;116091;116092;116093;116094;116095;116096;116097;116098;116099;116100;116101;116102;116103;116104;116105;116106;116107;116108;116109;116110;116111;116112;116113;116114;116115;116116;116117;116118;116119;116120;116121;116122;116123;116124;116125;116126;116127;116128;116129;116130;116131;116132;116133;116134;116135;116136;116137;116138;116139;116140;116141;116142;116143;116144;116145;116146;116147;116148;116149;116150;116151;116152;116153;116154;116155;116156;116157;116158;116159;116160;116161;116162;116163;116164;116165;116166;116167;116168;116169;116170;116171;116172;116173;116174;116175;116176;116177;116178;116179;116180;116181;116182;116183;116184;116185;116186;116187;116188;116189;116190;116191;116192;116193;116194;116195;116196;116197;116198;116199;116200;116201;116202;116203;116204;116205;116206;116207;116208;116209;116210;116211;116212;116213;116214;116215;116216;116217;116218;116219;116220;116221;116222;116223;116224;116225;116226;116227;116228;116229;116230;116231;116232;116233;116234;116235;116236;116237;116238;116239;116240;116241;116242;116243;116244;116245;116246;116247;116248;116249;116250;116251;116252;116253;116254;116255;116256;116257;116258;116259;116260;116261;116262;116263;116264;116265;116266;116267;116268;116269;116270;116271;116272;116273;116274;116275;116276;116277;116278;116279;116280;116281;116282;116283;116284;116285;116286;116287;116288;116289;116290;116291;116292;116293;116294;116295;116296;116297;116298;116299;116300;116301;116302;116303;116304;116305;116306;116307;116308;116309;116310;116311;116312;116313;116314;116315;116316;116317;116318;116319;116320;116321;116322;116323;116324;116325;116326;116327;116328;116329;116330;116331;116332;116333;116334;116335;116336;116337;116338;116339;116340;116341;116342;116343;116344;116345;116346;116347;116348;116349;116350;116351;116352;116353;116354;116355;116356;116357;116358;116359;116360;116361;116362;116363;116364;116365;116366;116367;116368;116369;116370;116371;116372;116373;116374;116375;116376;116377;116378;116379;116380;116381;116382;116383;116384;116385;116386;116387;116388;116389;116390;116391;116392;116393;116394;116395;116396;116397;116398;116399;116400;116401;116402;116403;116404;116405;116406;116407;116408;116409;116410;116411;116412;116413;116414;116415;116416;116417;116418;116419;116420;116421;116422;116423;116424;116425;116426;116427;116428;116429;116430;116431;116432;116433;116434;116435;116436;116437;116438;116439;116440;116441;116442;116443;116444;116445;116446;116447;116448 116362 439 TIGISVDPR Unmodified 956.5291 0.52909508 813 P26373 RPL13 60S ribosomal protein L13 yes yes 0 0 0 0 By MS/MS By MS/MS 5 1.73 1 1 2 2 2 1 1 4 6 43.798 43.953 2 0.00030628 12181 20211116_3433_TMUAki_TMT10x_P_F5 129.4 74.848 52210000 85167000 700330 90794000 78822000 81882000 57792000 67529000 64683000 57766000 72603000 48616000 79491000 5128000 92094000 75077000 83643000 59934000 69091000 65783000 56819000 69793000 17 17 10 17 17 17 17 17 17 17 17 24451000 37762000 307150 41025000 47857000 55630000 30666000 33045000 31687000 28401000 33871000 22767000 35248000 2515800 41840000 45466000 55264000 32036000 34599000 32269000 27929000 32607000 8 8 5 8 8 8 8 8 8 8 8 27759000 47406000 393180 49768000 30965000 26252000 27127000 34484000 32996000 29365000 38732000 25849000 44243000 2612200 50253000 29612000 28379000 27898000 34492000 33514000 28890000 37186000 9 9 5 9 9 9 9 9 9 9 9 11019000000 5693900000 5324700000 18856 813 17318 96137;96138;96139;96140;96141;96142;96143;96144;96145;96146 116449;116450;116451;116452;116453;116454;116455;116456;116457;116458;116459;116460;116461;116462;116463;116464;116465;116466 116452 18 TIGQVLAR Unmodified 856.51305 0.51305109 2547 Q96S44 TP53RK TP53-regulating kinase yes yes 0 0 0 0 By MS/MS 7 0 1 1 39.123 39.783 2 0.068214 11659 20211116_3446_TMUAki_TMT10x_S_F7 61.582 6.8057 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18857 2547 17319 96147 116467 116467 1 TIGTGLVTNTLAMTEEEK Unmodified 1906.9558 0.95575851 1097 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5 1.22 1 2 2 2 1 4 4 73.288 73.303 3 1.2405E-40 23393 20211116_3445_TMUAki_TMT10x_S_F6 202.34 171.47 53394000 84517000 473750 86259000 50143000 52222000 55569000 28284000 26323000 30865000 53803000 49718000 78870000 4694100 87367000 48236000 54761000 55177000 30042000 29034000 30038000 51051000 12 12 7 12 12 12 12 12 12 12 12 29767000 46803000 418030 47474000 23451000 33234000 28902000 17045000 16180000 18761000 30741000 27718000 43674000 2730700 48171000 22646000 34371000 28638000 18198000 17534000 18253000 29204000 7 7 5 7 7 7 7 7 7 7 7 23627000 37715000 55720 38786000 26691000 18988000 26667000 11239000 10143000 12103000 23063000 21999000 35196000 1963400 39196000 25590000 20390000 26539000 11844000 11500000 11785000 21848000 5 5 2 5 5 5 5 5 5 5 5 7046600000 3170400000 3876200000 18858 1097 17320 96148;96149;96150;96151;96152;96153;96154;96155 116468;116469;116470;116471;116472;116473;116474;116475;116476;116477;116478;116479;116480 116479 13 TIGTGLVTNTLAMTEEEK Oxidation (M) 1922.9507 0.95067313 1097 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 4.86 0.99 1 1 3 2 4 3 65.999 66.037 2;3 8.2004E-22 21280 20211116_3433_TMUAki_TMT10x_P_F5 158.01 137.72 13556000 24367000 97950 21065000 15062000 22400000 15984000 17393000 19332000 17776000 18710000 12622000 22725000 1223600 21743000 14470000 22625000 16269000 17949000 19498000 17345000 18068000 4 4 3 4 4 4 4 4 4 4 4 6077300 10884000 70358 9595500 5795900 11553000 6954300 7536800 8316500 7642700 8225300 5659100 10151000 565480 9909300 5590800 11559000 7035600 7868700 8397800 7459800 7937400 2 2 2 2 2 2 2 2 2 2 2 7478500 13483000 27592 11469000 9266100 10847000 9030000 9856600 11015000 10134000 10485000 6963400 12573000 658170 11834000 8879700 11066000 9233400 10080000 11100000 9885600 10131000 2 2 1 2 2 2 2 2 2 2 2 2610600000 836120000 1774500000 18859 1097 17320 96156;96157;96158;96159;96160;96161;96162 116481;116482;116483;116484;116485;116486;116487;116488 116484 1457 8 TIGTKPVAHIDQFTADMLGSAELAEEVNLNGSGK Oxidation (M) 3528.7406 0.74062736 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 1 1 By MS/MS By MS/MS 7 0 2 1 1 70.063 70.424 4 4.3166E-89 24230 20211116_3446_TMUAki_TMT10x_S_F7 253.47 238.18 6107300 11236000 40160 8623200 7830900 10961000 8539800 9827600 10576000 10169000 8734500 5686000 10475000 477990 9016600 7523000 10997000 8688300 10059000 10605000 9917700 8482900 3 3 1 3 3 3 3 3 3 3 3 1759400 3370100 0 2270400 1837500 4202700 1844300 2528200 3252400 3238500 2612000 1637500 3140500 61135 2422800 1756500 4124700 1914000 2676300 3224400 3133600 2539500 1 1 0 1 1 1 1 1 1 1 1 4347800 7866200 40160 6352800 5993400 6758500 6695600 7299400 7323700 6930800 6122500 4048500 7334400 416860 6593900 5766600 6872200 6774300 7383200 7380500 6784100 5943400 2 2 1 2 2 2 2 2 2 2 2 2900600000 1497800000 1402800000 18860 1147 17321 96163;96164 116489;116490;116491 116491 1526 3 TIGVAAK Unmodified 658.40138 0.40137537 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 0 By MS/MS 6.25 0.433 3 1 4 28.856 28.84 2 0.017511 5322 20211116_3435_TMUAki_TMT10x_P_F7 85.359 27.896 40773 61091 0 42974 55799 90045 51022 55530 66006 56900 54750 37950 56937 1877.5 45824 53272 88053 52467 58242 66094 55515 53164 1 1 0 1 1 1 1 1 1 1 1 40773 61091 0 42974 55799 90045 51022 55530 66006 56900 54750 37950 56937 1877.5 45824 53272 88053 52467 58242 66094 55515 53164 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 315280 315280 0 18861 2345 17322 96165;96166;96167;96168 116492;116493;116494;116495 116495 4 TIGVDFLER Unmodified 1048.5553 0.55530983 3167 Q9ULC3 RAB23 Ras-related protein Rab-23 yes yes 0 0 0 0 By MS/MS 4 0 1 1 61.924 61.786 2 0.07863 19696 20211116_3442_TMUAki_TMT10x_S_F4 59.052 23.172 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18862 3167 17323 96169 116496 116496 1 TIGVMTMVHGDNMGLVLPPR 2 Oxidation (M) 2169.0745 0.074450632 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 2 0 By MS/MS By MS/MS 8 0 2 1 1 54.708 54.824 3 0.0018341 16139 20211116_3436_TMUAki_TMT10x_P_F8 60.062 51.973 1723700 2347000 0 2395800 1866900 2922200 1879600 1937200 1628200 1603600 2083900 1604900 2190100 133150 2448500 1789600 2922300 1898100 2009400 1683500 1579900 1996100 1 1 0 1 1 1 1 1 1 1 1 1723700 2347000 0 2395800 1866900 2922200 1879600 1937200 1628200 1603600 2083900 1604900 2190100 133150 2448500 1789600 2922300 1898100 2009400 1683500 1579900 1996100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 171160000 171160000 0 18863 542 17324 96170;96171 116497;116498 116497 479;480;481 2 TIGVMTMVHGDNMGLVLPPR 3 Oxidation (M) 2185.0694 0.069365254 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 3 0 By MS/MS 7 0 1 1 48.085 48.568 3 0.0033703 15300 20211116_3446_TMUAki_TMT10x_S_F7 55.907 42.965 1325700 2368800 0 2312500 1333700 1330200 1071700 2561700 2411400 2002000 2192400 1234200 2210100 96545 2348400 1271400 1443300 1142300 2525700 2386800 1978300 2121700 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1325700 2368800 0 2312500 1333700 1330200 1071700 2561700 2411400 2002000 2192400 1234200 2210100 96545 2348400 1271400 1443300 1142300 2525700 2386800 1978300 2121700 2 2 0 2 2 2 2 2 2 2 2 582020000 0 582020000 18864 542 17324 96172 116499;116500 116500 479;480;481 2 TIHAELSK Unmodified 897.49198 0.4919813 1704 Q14318;Q14318-2;Q14318-3 FKBP8 Peptidyl-prolyl cis-trans isomerase FKBP8 yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 33.45 33.395 3 0.0016635 8065 20211116_3433_TMUAki_TMT10x_P_F5 98.033 40.435 997010 1434500 5751.8 1440700 1402100 1672500 1069500 762540 911020 763620 1142800 928360 1338600 93692 1472700 1336300 1669000 1097300 821250 941970 745750 1095300 1 1 1 1 1 1 1 1 1 1 1 997010 1434500 5751.8 1440700 1402100 1672500 1069500 762540 911020 763620 1142800 928360 1338600 93692 1472700 1336300 1669000 1097300 821250 941970 745750 1095300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39282000 39282000 0 18865 1704 17325 96173;96174 116501;116502 116502 2 TIHLSSIRPPRLEGENTQDK Unmodified 2290.203 0.20295692 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 2 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 42.015 41.934 5 1.5768E-06 10951 20211116_3440_TMUAki_TMT10x_S_F2 89.507 76.186 2007200 3347900 67713 4122200 4272300 4955700 2656600 4011200 4073600 3296400 3375800 1869400 3126800 261240 4163100 4059900 4975900 2823100 4104600 4057400 3248900 3278100 3 3 3 3 3 3 3 3 3 3 3 1507700 2465900 60039 3018800 3845000 4492900 2290100 3117600 3144500 2506300 2520700 1404300 2303000 213690 3062600 3651300 4455200 2430700 3220900 3139500 2473000 2451000 2 2 2 2 2 2 2 2 2 2 2 499460 881970 7673.7 1103400 427280 462840 366460 893600 929050 790040 855100 465100 823800 47549 1100400 408630 520700 392310 883710 917910 775860 827170 1 1 1 1 1 1 1 1 1 1 1 287570000 150140000 137430000 18866 2048 17326 96175;96176;96177 116503;116504;116505 116505 3 TIIFCETKK Unmodified 1138.6056 0.60563084 2918 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 1 By MS/MS By MS/MS 5 3.29 2 1 2 3 2 46.22 46.18 3 0.00014419 12567 20211116_3436_TMUAki_TMT10x_P_F8 90.05 45.862 8966200 13605000 40624 14302000 13066000 11389000 8688700 10739000 9674000 9590400 12018000 8348700 12697000 838640 14497000 12421000 11767000 9072700 10918000 9881600 9413800 11521000 2 2 2 2 2 2 2 2 2 2 2 3784500 5086400 2903.8 5547000 7516700 6822600 3803000 3653500 3416100 3322500 4837800 3523700 4747900 368740 5645400 7114200 6800500 4039700 3864600 3542600 3258500 4622800 1 1 1 1 1 1 1 1 1 1 1 5181700 8518400 37720 8754800 5549200 4565900 4885700 7086000 6257900 6267900 7180100 4825000 7949500 469900 8852000 5306400 4966500 5032900 7052900 6339000 6155200 6897800 1 1 1 1 1 1 1 1 1 1 1 317850000 162570000 155280000 18867 2918 17327 96178;96179;96180;96181;96182 116506;116507;116508;116509;116510 116508 5 TIIFVETK Unmodified 949.54843 0.54843354 2368 Q92841;Q92841-3;Q92841-1;Q92841-2 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 0 0 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 58.232 58.57 2 0.00041051 16930 20211116_3434_TMUAki_TMT10x_P_F6 141.52 106.41 49051000 78707000 981460 89645000 71178000 69416000 53328000 59120000 54498000 55379000 66029000 45677000 73483000 5106500 90377000 67848000 71733000 55063000 60516000 55801000 54240000 63339000 5 5 4 5 5 5 5 5 5 5 5 20755000 32679000 561820 36618000 40926000 45141000 26389000 26654000 23638000 25246000 29212000 19329000 30508000 2526900 37206000 38911000 45045000 27443000 27991000 24366000 24715000 28007000 2 2 2 2 2 2 2 2 2 2 2 28295000 46028000 419640 53026000 30252000 24276000 26939000 32465000 30860000 30132000 36817000 26347000 42975000 2579600 53171000 28937000 26688000 27620000 32525000 31434000 29525000 35331000 3 3 2 3 3 3 3 3 3 3 3 3388500000 1768900000 1619500000 18868 2368 17328 96183;96184;96185;96186;96187 116511;116512;116513;116514;116515;116516 116512 6 TIIFVETKR Unmodified 1105.6495 0.64954457 2368 Q92841;Q92841-3;Q92841-1;Q92841-2 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 0 1 By matching By MS/MS 1.5 0.5 1 1 1 1 46.605 46.578 3 0.00098051 12926 20211116_3440_TMUAki_TMT10x_S_F2 94.309 66.688 1250900 2086700 17897 1897100 1304400 1271000 1186300 2222800 1977100 1729900 1919300 1164800 1946400 121140 1939400 1248800 1354800 1233900 2197200 1974700 1709800 1853300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1250900 2086700 17897 1897100 1304400 1271000 1186300 2222800 1977100 1729900 1919300 1164800 1946400 121140 1939400 1248800 1354800 1233900 2197200 1974700 1709800 1853300 1 1 1 1 1 1 1 1 1 1 1 115540000 71620000 43921000 18869 2368 17329 96188;96189 116517 116517 1 TIIGSFNGALAAVPVQDLGSTVIK Unmodified 2370.3159 0.31586142 2706 Q9BWD1 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 79.713 79.673 3 7.3073E-38 27609 20211116_3429_TMUAki_TMT10x_P_F2 185.41 170.48 21607000 36977000 231290 33675000 24168000 29930000 26587000 18792000 17745000 19925000 23914000 20119000 34491000 1492200 34532000 23241000 30472000 26568000 19702000 18658000 19413000 22878000 4 4 2 4 4 4 4 4 4 4 4 10630000 16589000 231290 15952000 9041700 14948000 11385000 8764600 8489200 9204800 11079000 9898900 15477000 1074600 16303000 8742500 15151000 11337000 9236500 8855000 8971800 10607000 2 2 2 2 2 2 2 2 2 2 2 10977000 20388000 0 17724000 15127000 14983000 15201000 10027000 9255800 10720000 12836000 10220000 19014000 417630 18228000 14498000 15321000 15231000 10466000 9803400 10441000 12271000 2 2 0 2 2 2 2 2 2 2 2 16460000000 7768800000 8690900000 18870 2706 17330 96190;96191;96192;96193 116518;116519;116520;116521 116518 4 TIIITCSFTPGSCTLTAYK Unmodified 2133.0486 0.048613037 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.745 1 2 3 3 3 75.188 75.083 2;3 6.205E-41 25090 20211116_3442_TMUAki_TMT10x_S_F4 198.14 162.4 23792000 41450000 185990 36382000 30785000 39331000 29134000 24207000 18754000 23849000 29247000 22153000 38659000 1770900 37518000 29484000 39546000 29317000 25364000 19906000 23307000 27889000 8 8 5 8 8 8 8 8 8 8 8 14697000 24748000 164800 22009000 15795000 29078000 19209000 15008000 11910000 15311000 17401000 13685000 23083000 1354300 22752000 15239000 28870000 19080000 15978000 12631000 14941000 16616000 5 5 4 5 5 5 5 5 5 5 5 9094800 16702000 21182 14373000 14990000 10254000 9925100 9199000 6844200 8537400 11846000 8468200 15576000 416660 14766000 14246000 10676000 10237000 9386400 7275100 8365400 11273000 3 3 1 3 3 3 3 3 3 3 3 6258700000 3731200000 2527500000 18871 1997 17331 96194;96195;96196;96197;96198;96199 116522;116523;116524;116525;116526;116527;116528;116529;116530 116530 9 TIIPLISQCTPK Unmodified 1369.7639 0.7639224 989 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 2.86 2.23 4 4 4 2 7 7 65.572 65.363 2;3 5.3687E-15 22353 20211116_3439_TMUAki_TMT10x_S_F1 185.77 147.41 86819000 140960000 714780 150230000 109670000 131430000 95350000 103200000 90260000 99313000 108530000 80839000 131570000 7761200 152320000 104810000 134410000 97308000 106240000 92695000 97154000 104130000 17 17 9 17 17 17 17 17 17 17 17 49222000 76223000 360500 81753000 68739000 94334000 60053000 57054000 47940000 53124000 57776000 45832000 71144000 4498200 83199000 65701000 94487000 60994000 59772000 49650000 52045000 55430000 8 8 5 8 8 8 8 8 8 8 8 37597000 64742000 354280 68476000 40930000 37092000 35296000 46150000 42320000 46189000 50750000 35007000 60425000 3263000 69124000 39111000 39926000 36315000 46466000 43045000 45109000 48696000 9 9 4 9 9 9 9 9 9 9 9 22505000000 12231000000 10275000000 18872 989 17332 96200;96201;96202;96203;96204;96205;96206;96207;96208;96209;96210;96211;96212;96213 116531;116532;116533;116534;116535;116536;116537;116538;116539;116540;116541;116542;116543;116544;116545;116546;116547 116540 17 TIIQNPTDQQK Unmodified 1284.6674 0.66737948 3217 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 2 2 39.098 39.214 3 4.8832E-05 10639 20211116_3433_TMUAki_TMT10x_P_F5 92.866 73.623 1053400 1771300 8659.8 1874100 1035200 897810 1105300 1310500 1434900 1126900 1649900 980860 1653200 95148 1890100 994850 984130 1127700 1306100 1453000 1108200 1585000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1053400 1771300 8659.8 1874100 1035200 897810 1105300 1310500 1434900 1126900 1649900 980860 1653200 95148 1890100 994850 984130 1127700 1306100 1453000 1108200 1585000 2 2 2 2 2 2 2 2 2 2 2 215820000 44562000 171260000 18873 3217 17333 96214;96215;96216;96217 116548;116549;116550 116548 3 TIISYIDEQFER Unmodified 1512.746 0.74602373 1752 Q15019;Q15019-2;Q15019-3 SEPT2 Septin-2 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 1.71 2 2 2 2 2 2 5 7 78.286 78.265 2 2.0207E-39 25994 20211116_3431_TMUAki_TMT10x_P_F4 295 254.61 65627000 111640000 55432 97634000 76252000 91951000 83965000 62468000 57027000 65406000 80309000 61099000 104120000 4820800 100510000 73258000 93362000 83932000 65089000 60020000 63758000 76750000 9 9 1 9 9 9 9 9 9 9 9 27637000 45409000 0 39236000 26780000 47826000 32797000 25534000 23438000 27304000 32792000 25730000 42348000 1947700 40591000 25808000 47691000 32663000 27139000 24586000 26594000 31344000 4 4 0 4 4 4 4 4 4 4 4 37990000 66234000 55432 58399000 49472000 44126000 51168000 36934000 33589000 38102000 47517000 35369000 61774000 2873100 59916000 47450000 45671000 51269000 37950000 35435000 37164000 45406000 5 5 1 5 5 5 5 5 5 5 5 14094000000 5714100000 8379600000 18874 1752 17334 96218;96219;96220;96221;96222;96223;96224;96225;96226;96227;96228;96229 116551;116552;116553;116554;116555;116556;116557;116558;116559;116560;116561 116553 11 TIIVTTR Unmodified 802.49125 0.49125301 180 O15294;O15294-3;O15294-2;O15294-4 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes no 0 0 0 0 By MS/MS By MS/MS 5.17 3.02 2 1 1 2 4 2 34.155 34.357 2 0.0055127 7017 20211116_3447_TMUAki_TMT10x_S_F8 108.09 65.613 2396700 3618200 27596 3911900 3302300 2936400 2455200 2257400 2301300 2048800 3073200 2231600 3377300 221190 3955400 3145700 3036300 2530000 2323200 2375300 2009600 2940700 7 7 3 7 7 7 7 7 7 7 7 1109700 1592000 18170 1813200 2004800 1819300 1160400 1067600 1113100 993700 1481200 1033400 1486300 113500 1834300 1901700 1836100 1219800 1121200 1147500 973540 1417500 4 4 1 4 4 4 4 4 4 4 4 1287000 2026200 9425.7 2098600 1297500 1117100 1294800 1189800 1188200 1055100 1592000 1198300 1891000 107690 2121200 1244000 1200200 1310200 1202000 1227700 1036000 1523200 3 3 2 3 3 3 3 3 3 3 3 132950000 70890000 62057000 18875 180 17335 96230;96231;96232;96233;96234;96235 116562;116563;116564;116565;116566 116565 5 TILEEEITPTIQK Unmodified 1513.8239 0.8239397 423 O95347;O95347-2 SMC2 Structural maintenance of chromosomes protein 2 yes no 0 0 0 0 By MS/MS 4 0 1 1 64.978 64.812 3 0.028429 20941 20211116_3442_TMUAki_TMT10x_S_F4 48.532 23.059 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18876 423 17336 96236 116567 116567 1 TILGPTENIK Unmodified 1084.6128 0.61282471 335 O75439 PMPCB Mitochondrial-processing peptidase subunit beta yes yes 0 0 0 0 By MS/MS 6 0 1 1 50.197 50.347 2 1.0341E-08 13944 20211116_3445_TMUAki_TMT10x_S_F6 136.63 87.217 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18877 335 17337 96237 116568 116568 1 TILMMGR 2 Oxidation (M) 852.41974 0.41974433 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 2 0 By MS/MS By MS/MS 8 0 2 1 1 33.087 33.516 2 0.088178 7492 20211116_3436_TMUAki_TMT10x_P_F8 40.686 23.124 147050 246600 2257.2 279260 260150 233190 194550 149210 155820 135980 211810 136930 230230 15879 281900 247930 238510 199570 155550 162200 133350 202590 2 2 2 2 2 2 2 2 2 2 2 98793 163300 852.83 175330 214060 187270 141660 79640 78605 76249 136770 91993 152420 10600 178200 203480 187630 145530 86303 84790 74609 130140 1 1 1 1 1 1 1 1 1 1 1 48254 83303 1404.3 103930 46090 45910 52890 69569 77215 59735 75038 44940 77808 5279.1 103700 44450 50881 54046 69245 77411 58745 72454 1 1 1 1 1 1 1 1 1 1 1 20528000 10145000 10383000 18878 653 17338 96238;96239 116569 116569 712;713 1 TILQCALNRPAFFAER Unmodified 1905.9883 0.98833646 739 P20073;P20073-2 ANXA7 Annexin A7 yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 64.308 64.32 3 8.5047E-29 20473 20211116_3433_TMUAki_TMT10x_P_F5 181.41 151.92 29287000 49476000 153730 49810000 31722000 41038000 35475000 30566000 25658000 30454000 34860000 27269000 46168000 2460100 50660000 30511000 42113000 35484000 31602000 26859000 29747000 33343000 6 6 3 6 6 6 6 6 6 6 6 11108000 18511000 48307 18180000 12978000 21797000 13817000 11837000 9387100 11774000 12836000 10343000 17272000 960220 18624000 12466000 21759000 13834000 12536000 9866000 11502000 12276000 2 2 1 2 2 2 2 2 2 2 2 18179000 30965000 105430 31630000 18744000 19241000 21659000 18729000 16271000 18680000 22024000 16926000 28896000 1499900 32036000 18045000 20354000 21650000 19066000 16993000 18246000 21067000 4 4 2 4 4 4 4 4 4 4 4 3627000000 1213700000 2413300000 18879 739 17339 96240;96241;96242 116570;116571;116572;116573;116574;116575 116571 6 TILQGSSEGTGLSALLPQPK Unmodified 1996.0841 0.084070566 2359 Q92733 PRCC Proline-rich protein PRCC yes yes 0 0 0 0 By MS/MS 4 2.94 1 1 1 3 71.749 71.479 3 5.6439E-07 24308 20211116_3447_TMUAki_TMT10x_S_F8 94.45 81.031 8646600 14706000 136100 12625000 10844000 10646000 10960000 8723400 8310200 9508200 10348000 8051500 13714000 834370 12997000 10406000 10924000 11029000 8989900 8642400 9253800 9918800 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8646600 14706000 136100 12625000 10844000 10646000 10960000 8723400 8310200 9508200 10348000 8051500 13714000 834370 12997000 10406000 10924000 11029000 8989900 8642400 9253800 9918800 3 3 2 3 3 3 3 3 3 3 3 1400600000 0 1400600000 18880 2359 17340 96243;96244;96245 116576;116577;116578;116579 116579 4 TILSLMTR Oxidation (M) 949.52665 0.52665224 1200 P53396;P53396-2 ACLY ATP-citrate synthase yes no 0 0 1 0 By MS/MS 2 0 1 1 46.577 46.523 2 0.10863 12891 20211116_3440_TMUAki_TMT10x_S_F2 53.554 22.265 1680600 2808500 12377 3061500 1787700 1504300 1381400 3271900 3032600 2530900 2698400 1564900 2621500 152370 3082100 1704600 1668200 1473600 3215300 3001000 2502300 2613400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1680600 2808500 12377 3061500 1787700 1504300 1381400 3271900 3032600 2530900 2698400 1564900 2621500 152370 3082100 1704600 1668200 1473600 3215300 3001000 2502300 2613400 1 1 1 1 1 1 1 1 1 1 1 46835000 0 46835000 18881 1200 17341 96246 116580 116580 1611 1 TILSNQTVDIPENVDITLK Unmodified 2112.1314 0.13141469 904 P32969 RPL9 60S ribosomal protein L9 yes yes 0 0 0 0 By MS/MS By MS/MS 4.95 1.39 1 2 4 5 4 3 9 10 77.903 77.89 2;3 1.2323E-61 24568 20211116_3434_TMUAki_TMT10x_P_F6 233.59 212.21 155660000 265050000 2535700 252120000 173220000 220590000 186090000 131300000 125840000 144990000 190480000 144950000 247270000 13961000 257640000 166530000 224660000 186220000 138410000 132950000 141040000 181750000 22 22 12 22 22 22 22 22 22 22 22 84100000 144920000 1568500 133060000 87336000 148490000 98440000 70982000 69274000 82548000 102490000 78315000 135190000 7209300 136810000 84102000 148580000 98368000 76427000 72929000 80144000 97840000 11 11 7 11 11 11 11 11 11 11 11 71557000 120130000 967200 119050000 85881000 72096000 87652000 60313000 56565000 62439000 87987000 66631000 112090000 6751500 120830000 82432000 76078000 87854000 61981000 60021000 60893000 83905000 11 11 5 11 11 11 11 11 11 11 11 32026000000 16059000000 15966000000 18882 904 17342 96247;96248;96249;96250;96251;96252;96253;96254;96255;96256;96257;96258;96259;96260;96261;96262;96263;96264;96265 116581;116582;116583;116584;116585;116586;116587;116588;116589;116590;116591;116592;116593;116594;116595;116596;116597;116598;116599;116600;116601;116602;116603;116604 116591 24 TILTTSHAFPYIK Unmodified 1490.8133 0.81331543 2525 Q96N67;Q96N67-3;Q96N67-2;Q96N67-4;Q96N67-5;Q96N67-6 DOCK7 Dedicator of cytokinesis protein 7 yes no 0 0 0 0 By MS/MS By matching 3.5 0.5 1 1 1 1 59.271 59.095 3 0.00096391 19790 20211116_3430_TMUAki_TMT10x_P_F3 74.46 54.364 4547300 6628100 0 7704200 5767100 8109300 5341700 3691400 3970000 4035400 4911700 4233400 6188700 317220 7789600 5514000 8137000 5398100 3986400 4132200 3927000 4709000 1 1 0 1 1 1 1 1 1 1 1 4547300 6628100 0 7704200 5767100 8109300 5341700 3691400 3970000 4035400 4911700 4233400 6188700 317220 7789600 5514000 8137000 5398100 3986400 4132200 3927000 4709000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 422560000 224190000 198370000 18883 2525 17343 96266;96267 116605 116605 1 TILVYSRPPCQPQFSLTEPMKK Oxidation (M) 2635.3502 0.35021479 2991 Q9NWV8;Q9NWV8-2 BABAM1 BRISC and BRCA1-A complex member 1 yes no 0 0 1 2 By MS/MS 4 0 1 1 57.329 57.256 4 0.00037841 17827 20211116_3442_TMUAki_TMT10x_S_F4 62.684 49.496 2939600 5155900 40595 5580100 4044800 3986800 3021600 5630100 4903100 5108500 4761000 2737400 4812600 297030 5638900 3855100 4196700 3176600 5625700 4900700 5010700 4597100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2939600 5155900 40595 5580100 4044800 3986800 3021600 5630100 4903100 5108500 4761000 2737400 4812600 297030 5638900 3855100 4196700 3176600 5625700 4900700 5010700 4597100 1 1 1 1 1 1 1 1 1 1 1 855970000 0 855970000 18884 2991 17344 96268 116606 116606 3065 1 TIMQLCHDR Unmodified 1172.543 0.54304736 732 P19388 POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1 yes yes 0 0 0 0 By MS/MS 5 0 1 1 33.677 33.855 3 0.090852 7051 20211116_3444_TMUAki_TMT10x_S_F5 40.244 31.003 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18885 732 17345 96269 116607 116607 1 TINEVENQILTR Unmodified 1428.7573 0.75725712 235;644 O43707;O43707-2;O43707-3;P12814;P12814-2;P12814-3;P12814-4 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 no no 0 0 0 0 By MS/MS By MS/MS 3.5 0.806 1 4 4 1 5 5 58.328 58.167 2;3 7.408E-39 19409 20211116_3430_TMUAki_TMT10x_P_F3 291.08 234.52 43928000 73700000 484020 84376000 68583000 79283000 50389000 56284000 53159000 49748000 63051000 40904000 68810000 4308700 85247000 65324000 80566000 52149000 58190000 54310000 48855000 60517000 14 14 9 14 14 14 14 14 14 14 14 27037000 44359000 173650 46776000 52647000 65979000 37717000 34679000 32773000 30847000 37291000 25174000 41400000 2652300 47835000 50108000 65327000 38886000 36724000 33718000 30284000 35834000 9 9 5 9 9 9 9 9 9 9 9 16891000 29341000 310370 37600000 15936000 13304000 12672000 21605000 20386000 18901000 25760000 15729000 27410000 1656500 37412000 15216000 15239000 13263000 21467000 20592000 18571000 24683000 5 5 4 5 5 5 5 5 5 5 5 5057800000 2814700000 2243100000 18886 235;644 17346 96270;96271;96272;96273;96274;96275;96276;96277;96278;96279 116608;116609;116610;116611;116612;116613;116614;116615;116616;116617;116618;116619;116620;116621;116622 116610 15 TINLYPLTNYTFGTK Unmodified 1744.9036 0.903587 246 O43809 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 4 4 4 4 78.041 77.987 2;3 5.4151E-26 26265 20211116_3442_TMUAki_TMT10x_S_F4 199.27 157.26 63088000 100950000 1058600 106420000 61091000 85075000 74627000 46087000 50299000 55606000 68501000 58745000 94218000 5652900 107860000 58947000 87109000 74236000 49111000 52881000 53915000 65517000 9 9 5 9 9 9 9 9 9 9 9 30259000 47140000 572530 50460000 27607000 48850000 32793000 21435000 24311000 26620000 31744000 28176000 43999000 2652400 51219000 26613000 49248000 32730000 23332000 25367000 25785000 30392000 4 4 2 4 4 4 4 4 4 4 4 32829000 53810000 486080 55962000 33484000 36225000 41833000 24652000 25989000 28986000 36757000 30569000 50218000 3000500 56644000 32334000 37861000 41506000 25779000 27514000 28131000 35125000 5 5 3 5 5 5 5 5 5 5 5 14401000000 7889300000 6511900000 18887 246 17347 96280;96281;96282;96283;96284;96285;96286;96287 116623;116624;116625;116626;116627;116628;116629;116630;116631 116629 9 TINLYPLTNYTFGTKEPLYEK Unmodified 2504.2839 0.28389259 246 O43809 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.707 2 4 2 5 3 77.406 77.359 3;4 3.947E-19 25380 20211116_3440_TMUAki_TMT10x_S_F2 145.55 131.72 42472000 72935000 934260 54953000 67421000 61219000 54316000 51585000 48305000 50472000 56299000 39552000 67988000 4703800 57425000 64371000 61762000 55594000 52901000 49689000 49340000 54062000 7 7 5 7 7 7 7 7 7 7 7 12520000 21346000 112370 16491000 11629000 25292000 15692000 14467000 14252000 14982000 15416000 11658000 19900000 1130200 17298000 11259000 24980000 15660000 15271000 14603000 14611000 14835000 3 3 2 3 3 3 3 3 3 3 3 29952000 51589000 821890 38462000 55792000 35927000 38624000 37118000 34053000 35490000 40883000 27894000 48088000 3573500 40127000 53112000 36783000 39934000 37631000 35085000 34728000 39227000 4 4 3 4 4 4 4 4 4 4 4 14006000000 8344200000 5662200000 18888 246 17348 96288;96289;96290;96291;96292;96293;96294;96295 116632;116633;116634;116635;116636;116637;116638 116635 7 TINVYPNFRPTPK Unmodified 1545.8304 0.83036248 409 O95168;O95168-2 NDUFB4 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 yes no 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 49.601 49.745 3 1.6407E-14 14701 20211116_3442_TMUAki_TMT10x_S_F4 162.41 138.58 13116000 21792000 133590 25623000 16963000 17171000 11831000 17578000 16476000 14830000 18108000 12213000 20349000 1265800 25743000 16144000 18023000 12412000 17769000 16616000 14597000 17418000 3 3 3 3 3 3 3 3 3 3 3 4653200 7892700 116730 9724600 9587700 10610000 5917000 6515700 6341800 5745700 6707900 4333400 7371600 563680 9804600 9107900 10662000 6207000 6808300 6446100 5643300 6459500 1 1 1 1 1 1 1 1 1 1 1 8462500 13899000 16864 15899000 7375400 6561200 5913500 11062000 10135000 9084700 11400000 7879500 12977000 702090 15938000 7036200 7361200 6205400 10961000 10170000 8954100 10958000 2 2 2 2 2 2 2 2 2 2 2 941330000 503320000 438000000 18889 409 17349 96296;96297;96298 116639;116640;116641;116642 116641 4 TIPELSVRPSELEDGHTALNTHSVSPMEK Oxidation (M) 3189.5612 0.56120643 1726 Q14690 PDCD11 Protein RRP5 homolog yes yes 0 0 1 1 By MS/MS 5.5 0.5 1 1 2 50.893 51.042 5 1.2752E-13 13873 20211116_3434_TMUAki_TMT10x_P_F6 118.57 106.72 4978600 8787300 39151 8556900 9036200 13838000 6449500 8590600 8398100 7426400 7403000 4635800 8198700 497790 8824700 8601100 13653000 6737500 8964300 8423000 7301000 7172200 3 3 2 3 3 3 3 3 3 3 3 4978600 8787300 39151 8556900 9036200 13838000 6449500 8590600 8398100 7426400 7403000 4635800 8198700 497790 8824700 8601100 13653000 6737500 8964300 8423000 7301000 7172200 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 641760000 641760000 0 18890 1726 17350 96299;96300 116643;116644;116645 116644 2320 3 TIPGKQQLLIGAYAK Unmodified 1599.9348 0.93482755 2609 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 1 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 59.393 59.397 3 1.5363E-10 18736 20211116_3442_TMUAki_TMT10x_S_F4 139.65 124.11 7928600 15776000 202490 12980000 14736000 11043000 7813300 27313000 24701000 20094000 17779000 7383800 14710000 941390 13411000 13968000 11735000 8810100 26733000 24145000 19922000 17365000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7928600 15776000 202490 12980000 14736000 11043000 7813300 27313000 24701000 20094000 17779000 7383800 14710000 941390 13411000 13968000 11735000 8810100 26733000 24145000 19922000 17365000 3 3 3 3 3 3 3 3 3 3 3 755360000 0 755360000 18891 2609 17351 96301;96302;96303 116646;116647;116648;116649 116647 4 TIPIDGDFFSYTR Unmodified 1530.7355 0.73545904 500 P05091;P05091-2 ALDH2 Aldehyde dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.78 0.916 1 2 4 2 4 5 75.457 75.479 2;3 8.374E-44 26311 20211116_3446_TMUAki_TMT10x_S_F7 284.58 247.23 37363000 63569000 46431 57333000 43354000 55846000 45282000 35018000 33721000 35387000 45094000 34787000 59293000 2920700 58907000 41601000 56516000 45472000 36666000 35215000 34545000 43149000 11 11 4 11 11 11 11 11 11 11 11 22292000 37151000 12011 33821000 21496000 38475000 25335000 20754000 20358000 20943000 26729000 20754000 34653000 1633900 34808000 20694000 38510000 25343000 22001000 21155000 20446000 25587000 6 6 1 6 6 6 6 6 6 6 6 15071000 26418000 34420 23512000 21858000 17371000 19947000 14264000 13363000 14444000 18365000 14033000 24640000 1286800 24099000 20907000 18005000 20129000 14665000 14060000 14099000 17561000 5 5 3 5 5 5 5 5 5 5 5 8277100000 3475900000 4801200000 18892 500 17352 96304;96305;96306;96307;96308;96309;96310;96311;96312 116650;116651;116652;116653;116654;116655;116656;116657;116658;116659;116660;116661;116662 116661 13 TIPLTDNTVIEEHLGK Unmodified 1778.9414 0.94142907 1969 Q6DKI1 RPL7L1 60S ribosomal protein L7-like 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 2 3 59.927 59.982 3 3.9543E-22 17914 20211116_3445_TMUAki_TMT10x_S_F6 156.49 139.09 22480000 37672000 872490 40272000 31581000 42232000 27430000 32150000 30781000 32728000 32310000 20938000 35162000 2804400 40930000 30229000 42676000 28144000 33214000 31222000 31940000 31121000 7 7 7 7 7 7 7 7 7 7 7 13298000 21426000 584190 23321000 21250000 32841000 18071000 19284000 18422000 19795000 18946000 12386000 20000000 1758300 23800000 20331000 32564000 18507000 20306000 18744000 19311000 18260000 4 4 4 4 4 4 4 4 4 4 4 9182800 16246000 288310 16951000 10330000 9391200 9358900 12866000 12359000 12933000 13364000 8552200 15162000 1046100 17130000 9898100 10112000 9636800 12908000 12477000 12628000 12861000 3 3 3 3 3 3 3 3 3 3 3 2970600000 1677500000 1293100000 18893 1969 17353 96313;96314;96315;96316;96317 116663;116664;116665;116666;116667;116668;116669;116670 116670 8 TIPMDGQHFCFTR Oxidation (M) 1624.7126 0.71263189 880 P30837 ALDH1B1 Aldehyde dehydrogenase X, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 6.5 0.5 3 3 2 4 42.343 42.887 3 3.636E-09 12621 20211116_3446_TMUAki_TMT10x_S_F7 123.1 107.71 2915700 4628600 58665 5305300 4072100 4557700 3155700 3537800 3609600 3284800 4026500 2715300 4321500 309160 5353300 3884800 4666300 3263000 3640900 3667100 3218600 3871300 4 4 3 4 4 4 4 4 4 4 4 1881700 2920200 57293 3159600 3296800 3879700 2464100 2267500 2340300 2164000 2609700 1752500 2725700 229220 3217200 3143700 3871800 2539200 2383700 2395800 2117800 2509100 1 1 1 1 1 1 1 1 1 1 1 1034000 1708400 1372.4 2145700 775290 677930 691580 1270300 1269300 1120800 1416800 962780 1595700 79940 2136100 741140 794470 723760 1257200 1271200 1100800 1362200 3 3 2 3 3 3 3 3 3 3 3 578220000 397550000 180660000 18894 880 17354 96318;96319;96320;96321;96322;96323 116671;116672;116673;116674;116675;116676;116677 116676 1053 7 TIPMDGQHFCFTR Unmodified 1608.7177 0.71771726 880 P30837 ALDH1B1 Aldehyde dehydrogenase X, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 50.462 50.675 3 0.04753 15605 20211116_3435_TMUAki_TMT10x_P_F7 38.994 31.27 115090000 183980000 827810 232460000 155640000 132780000 119230000 97093000 95492000 108720000 145880000 107160000 171860000 10290000 232230000 148330000 140610000 122110000 100870000 99974000 105710000 139160000 4 4 2 4 4 4 4 4 4 4 4 38452000 59719000 827810 75153000 77267000 73674000 46465000 29835000 34883000 37965000 47959000 35809000 55782000 4503100 75556000 73363000 74160000 48383000 32790000 36458000 36744000 45859000 2 2 2 2 2 2 2 2 2 2 2 76637000 124260000 0 157300000 78374000 59104000 72763000 67258000 60610000 70760000 97919000 71352000 116070000 5786600 156670000 74969000 66452000 73723000 68077000 63516000 68964000 93304000 2 2 0 2 2 2 2 2 2 2 2 1471300000 997450000 473860000 18895 880 17354 96324;96325;96326 116678 116678 1 TIPNDPGFVVTLSNR Unmodified 1628.8522 0.85222014 2387 Q93009;Q93009-3 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 4 2 2 63.073 63.637 2;3 3.2854E-14 21417 20211116_3446_TMUAki_TMT10x_S_F7 153.75 107.62 21481000 36023000 89178 34452000 27174000 32492000 25019000 24999000 23640000 24793000 27421000 20001000 33607000 1845800 35228000 26001000 33053000 25448000 25790000 24244000 24223000 26335000 6 6 2 6 6 6 6 6 6 6 6 10479000 16738000 0 17007000 12642000 20418000 13426000 11550000 10932000 11581000 12850000 9756500 15620000 817310 17382000 12136000 20391000 13500000 12191000 11298000 11309000 12337000 3 3 0 3 3 3 3 3 3 3 3 11002000 19285000 89178 17444000 14533000 12074000 11594000 13450000 12708000 13212000 14571000 10244000 17988000 1028500 17846000 13865000 12662000 11948000 13598000 12946000 12914000 13999000 3 3 2 3 3 3 3 3 3 3 3 2404700000 1128700000 1276100000 18896 2387 17355 96327;96328;96329;96330 116679;116680;116681;116682;116683;116684 116683 6 TIPSWATLSASQLAR Unmodified 1600.8573 0.85730551 1930 Q5SSJ5;Q5SSJ5-2 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 2 4 4 2 70.498 70.326 2;3 6.5719E-28 22643 20211116_3431_TMUAki_TMT10x_P_F4 175.01 137.87 13130000 22019000 46123 20511000 15831000 14951000 15577000 10175000 8982600 12100000 15785000 12225000 20541000 1080800 20948000 15170000 15467000 15610000 10644000 9668200 11739000 15017000 5 5 2 5 5 5 5 5 5 5 5 3622500 6038400 0 4700800 3815600 5613400 4645900 2452900 2168200 2991100 3851500 3372400 5629400 246920 4903700 3675800 5591300 4592400 2669500 2373900 2899100 3663300 1 1 0 1 1 1 1 1 1 1 1 9508000 15981000 46123 15810000 12016000 9337900 10932000 7721800 6814400 9109300 11934000 8852900 14911000 833850 16044000 11494000 9875700 11018000 7974100 7294300 8839400 11354000 4 4 2 4 4 4 4 4 4 4 4 1628300000 717810000 910470000 18897 1930 17356 96331;96332;96333;96334;96335;96336 116685;116686;116687;116688;116689;116690;116691;116692 116687 8 TIPVVFK Unmodified 802.49528 0.49527576 804 P25685;P25685-2 DNAJB1 DnaJ homolog subfamily B member 1 yes no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 59.385 59.199 2 0.011479 19871 20211116_3439_TMUAki_TMT10x_S_F1 97.068 42.542 20512000 30601000 396550 35269000 26339000 30643000 21535000 21429000 22116000 22757000 25779000 19101000 28571000 2151700 35582000 25159000 31295000 22113000 22292000 22603000 22171000 24755000 4 4 4 4 4 4 4 4 4 4 4 13745000 19698000 307760 22721000 19782000 23966000 14785000 14193000 14948000 15604000 17085000 12801000 18392000 1511000 22984000 18861000 24119000 15264000 14966000 15275000 15181000 16415000 2 2 2 2 2 2 2 2 2 2 2 6766200 10903000 88791 12549000 6557400 6676600 6749200 7235300 7168000 7153100 8694600 6300600 10179000 640790 12597000 6297800 7176400 6848900 7325700 7328000 6989500 8340100 2 2 2 2 2 2 2 2 2 2 2 727810000 616130000 111680000 18898 804 17357 96337;96338;96339 116693;116694;116695;116696 116696 4 TIPWLEDRVPQK Unmodified 1480.8038 0.80381338 235 O43707;O43707-2 ACTN4 Alpha-actinin-4 yes no 0 0 0 1 By MS/MS 1 0 1 1 38.67 38.557 3 0.088928 11288 20211116_3439_TMUAki_TMT10x_S_F1 36.417 15.64 792030 1276500 32506 1475500 805730 722930 790830 851750 912290 811830 1085400 737700 1191900 96152 1480000 774170 785790 806720 858310 928920 794520 1041700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 792030 1276500 32506 1475500 805730 722930 790830 851750 912290 811830 1085400 737700 1191900 96152 1480000 774170 785790 806720 858310 928920 794520 1041700 1 1 1 1 1 1 1 1 1 1 1 1348000000 0 1348000000 18899 235 17358 96340 116697 116697 1 TIQAHEGFVR Unmodified 1156.5989 0.59890598 2960 Q9NV06 DCAF13 DDB1- and CUL4-associated factor 13 yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 31.786 31.771 3 0.00032946 7104 20211116_3431_TMUAki_TMT10x_P_F4 98.105 60.914 1042400 1611100 25443 1766000 2193100 2032900 1259000 1079500 1120900 1002200 1434300 970780 1503900 126250 1794600 2080900 2033100 1321600 1143300 1157500 981960 1373900 2 2 2 2 2 2 2 2 2 2 2 1042400 1611100 25443 1766000 2193100 2032900 1259000 1079500 1120900 1002200 1434300 970780 1503900 126250 1794600 2080900 2033100 1321600 1143300 1157500 981960 1373900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 79761000 79761000 0 18900 2960 17359 96341;96342 116698;116699 116698 2 TIQFVDWCPTGFK Unmodified 1597.7599 0.75989966 2044;2007 Q71U36;Q71U36-2;Q9BQE3;P0DPH8;P0DPH7;P0DPH7-2;Q9NY65;Q9NY65-2;Q6PEY2 TUBA1A;TUBA1C;TUBA8;TUBA3E Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-8 chain;Tubulin alpha-3E chain no no 0 0 0 0 By MS/MS By MS/MS 3.43 2.37 18 32 30 6 6 17 60 49 55.415 55.356 2;3 3.5486E-19 27304 20211116_3439_TMUAki_TMT10x_S_F1 192.68 136.12 610850000 956310000 3737800 946640000 662440000 624460000 737460000 236720000 175670000 306490000 622000000 568750000 892310000 49312000 961600000 636940000 647320000 726730000 262340000 219130000 296460000 586210000 116 115 49 116 115 116 116 114 115 115 115 289570000 436840000 1859200 430940000 271780000 361910000 324600000 111260000 82167000 141880000 281610000 269610000 407600000 23253000 439010000 261890000 367310000 318990000 126690000 101280000 137300000 265480000 58 57 24 58 57 58 58 56 57 57 57 321280000 519470000 1878600 515700000 390660000 262560000 412860000 125460000 93502000 164620000 340400000 299140000 484710000 26059000 522580000 375050000 280010000 407740000 135650000 117860000 159160000 320730000 58 58 25 58 58 58 58 58 58 58 58 92154000000 48713000000 43442000000 18901 2044;2007 17360 96343;96344;96345;96346;96347;96348;96349;96350;96351;96352;96353;96354;96355;96356;96357;96358;96359;96360;96361;96362;96363;96364;96365;96366;96367;96368;96369;96370;96371;96372;96373;96374;96375;96376;96377;96378;96379;96380;96381;96382;96383;96384;96385;96386;96387;96388;96389;96390;96391;96392;96393;96394;96395;96396;96397;96398;96399;96400;96401;96402;96403;96404;96405;96406;96407;96408;96409;96410;96411;96412;96413;96414;96415;96416;96417;96418;96419;96420;96421;96422;96423;96424;96425;96426;96427;96428;96429;96430;96431;96432;96433;96434;96435;96436;96437;96438;96439;96440;96441;96442;96443;96444;96445;96446;96447;96448;96449;96450;96451 116700;116701;116702;116703;116704;116705;116706;116707;116708;116709;116710;116711;116712;116713;116714;116715;116716;116717;116718;116719;116720;116721;116722;116723;116724;116725;116726;116727;116728;116729;116730;116731;116732;116733;116734;116735;116736;116737;116738;116739;116740;116741;116742;116743;116744;116745;116746;116747;116748;116749;116750;116751;116752;116753;116754;116755;116756;116757;116758;116759;116760;116761;116762;116763;116764;116765;116766;116767;116768;116769;116770;116771;116772;116773;116774;116775;116776;116777;116778;116779;116780;116781;116782;116783;116784;116785;116786;116787;116788;116789;116790;116791;116792;116793;116794;116795;116796;116797;116798;116799;116800;116801;116802;116803;116804;116805;116806;116807;116808;116809;116810;116811;116812;116813;116814;116815;116816;116817;116818;116819;116820;116821;116822;116823;116824;116825;116826;116827;116828;116829;116830;116831;116832;116833;116834;116835 116767 136 TIQQLETVLGEPLQSYF Unmodified 1965.0095 0.0095086389 2811 Q9H583 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 0 0 0 0 By MS/MS 4 0 1 1 83.788 83.797 3 0.043442 28262 20211116_3431_TMUAki_TMT10x_P_F4 37.157 25.887 216150 331350 12039 363260 231740 434640 265760 202730 257040 237740 236780 201340 309310 29358 369400 223780 433170 267520 218880 261160 230750 229040 1 1 1 1 1 1 1 1 1 1 1 216150 331350 12039 363260 231740 434640 265760 202730 257040 237740 236780 201340 309310 29358 369400 223780 433170 267520 218880 261160 230750 229040 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 84747000 84747000 0 18902 2811 17361 96452 116836 116836 1 TIQVENSHLILTGAGALNK Unmodified 1978.0847 0.084739268 1591 Q13085;Q13085-4;Q13085-3;Q13085-2 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 0 0 0 0 By MS/MS By MS/MS 8 0 3 2 1 58.63 58.745 3;4 1.5949E-12 17125 20211116_3447_TMUAki_TMT10x_S_F8 132.13 99.857 8046500 13990000 124840 13899000 10500000 14592000 9626900 10065000 9345200 9298800 10667000 7493000 13054000 817830 14196000 10054000 14721000 9802000 10439000 9566400 9113300 10249000 3 3 3 3 3 3 3 3 3 3 3 5811400 9601100 118020 9751600 7915300 12187000 7448300 7115300 6665600 6477600 7668500 5411900 8959400 621260 9974000 7585000 12151000 7555300 7471200 6850900 6352700 7366500 2 2 2 2 2 2 2 2 2 2 2 2235000 4389100 6828 4147600 2585100 2405400 2178700 2949300 2679600 2821200 2998600 2081100 4094600 196570 4222300 2468900 2570200 2246700 2967300 2715400 2760600 2882800 1 1 1 1 1 1 1 1 1 1 1 1573800000 1222100000 351680000 18903 1591 17362 96453;96454;96455 116837;116838;116839 116839 3 TIRPMDMETIEASVMK Oxidation (M) 1866.8889 0.88894127 619 P11177;P11177-2;P11177-3 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes no 0 0 1 1 By MS/MS 6 0 1 1 61.848 61.876 3 0.052678 18322 20211116_3434_TMUAki_TMT10x_P_F6 42.647 30.501 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18904 619 17363 96456 116840 116840 629 1 TIRYPDPLIK Unmodified 1214.7023 0.70230842 1362 P62701;Q8TD47 RPS4X;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2 yes no 0 0 0 1 By MS/MS By MS/MS 5 2.92 3 1 2 2 3 5 6 50.485 50.59 2;3 1.7313E-08 14419 20211116_3436_TMUAki_TMT10x_P_F8 142.43 91.081 130630000 207840000 391050 253030000 225110000 224290000 143820000 151060000 162120000 138240000 168930000 121620000 194100000 11586000 254510000 213770000 228620000 150700000 156900000 164370000 135540000 162750000 16 16 9 16 16 16 16 16 16 16 16 81655000 131400000 263550 161140000 187350000 189270000 107500000 96680000 107210000 88527000 104460000 76028000 122720000 8106600 162710000 177620000 189000000 113210000 102730000 108980000 86796000 100860000 9 9 4 9 9 9 9 9 9 9 9 48973000 76438000 127490 91886000 37760000 35022000 36325000 54383000 54908000 49718000 64466000 45596000 71382000 3479000 91798000 36142000 39621000 37496000 54176000 55385000 48749000 61892000 7 7 5 7 7 7 7 7 7 7 7 16984000000 10435000000 6548800000 18905 1362 17364 96457;96458;96459;96460;96461;96462;96463;96464;96465;96466;96467 116841;116842;116843;116844;116845;116846;116847;116848;116849;116850;116851;116852;116853;116854;116855;116856;116857 116850 17 TISASTQVQGGDFNLYENMR Oxidation (M) 2246.0274 0.027360323 2617 Q9BPU6 DPYSL5 Dihydropyrimidinase-related protein 5 yes yes 0 0 1 0 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 55.132 55.25 3 0.00010837 16004 20211116_3445_TMUAki_TMT10x_S_F6 64.249 58.154 11914000 20559000 196690 19623000 15649000 16837000 13397000 17401000 16383000 17132000 16853000 11094000 19180000 879500 20043000 14956000 17337000 13800000 17655000 16553000 16743000 16243000 9 9 5 9 9 9 9 9 9 9 9 4199100 6532900 27102 6437100 6542000 9018100 5777100 5810200 5212600 5886500 5609400 3909800 6095600 234600 6612300 6253800 8955800 5882400 6071600 5341700 5745900 5398900 3 3 1 3 3 3 3 3 3 3 3 7715200 14026000 169590 13186000 9106500 7818900 7620200 11591000 11170000 11246000 11244000 7184600 13085000 644900 13431000 8702300 8381200 7917100 11584000 11211000 10998000 10844000 6 6 4 6 6 6 6 6 6 6 6 4812400000 2255500000 2556900000 18906 2617 17365 96468;96469;96470;96471;96472 116858;116859;116860;116861;116862;116863;116864;116865;116866 116865 2866 9 TISASTQVQGGDFNLYENMR Unmodified 2230.0324 0.032445701 2617 Q9BPU6 DPYSL5 Dihydropyrimidinase-related protein 5 yes yes 0 0 0 0 By MS/MS 5 0 1 1 62.073 62.153 3 5.0717E-16 18507 20211116_3444_TMUAki_TMT10x_S_F5 129.46 122.73 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18907 2617 17365 96473 116867 116867 1 TISETIER Unmodified 947.49238 0.49237523 819 P26639;P26639-2 TARS Threonine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 34.381 34.263 2 0.0017429 10693 20211116_3441_TMUAki_TMT10x_S_F3 118.06 70.21 2568200 4163900 14639 4254800 3943500 3938100 3062500 2687200 2832300 2498700 3614600 2391300 3885700 242940 4329500 3759700 4003300 3145300 2789600 2919200 2448100 3462600 4 4 3 4 4 4 4 4 4 4 4 1443600 2360700 693.22 2385800 2664000 2861500 1717000 1547200 1603000 1391300 2088700 1344100 2202900 134530 2439200 2530400 2856200 1787600 1634800 1653000 1365300 1999900 2 2 1 2 2 2 2 2 2 2 2 1124600 1803200 13946 1869000 1279500 1076600 1345500 1139900 1229300 1107400 1525900 1047200 1682800 108400 1890200 1229400 1147100 1357800 1154900 1266200 1082900 1462800 2 2 2 2 2 2 2 2 2 2 2 166150000 99195000 66953000 18908 819 17366 96474;96475;96476;96477 116868;116869;116870;116871 116871 4 TISHVIIGLK Unmodified 1079.6703 0.67028001 3225 Q9Y265;Q9Y265-2 RUVBL1 RuvB-like 1 yes no 0 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 51.197 51.005 3 3.1004E-05 17558 20211116_3441_TMUAki_TMT10x_S_F3 98.048 75.917 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18909 3225 17367 96478;96479;96480;96481 116872;116873;116874;116875 116875 4 TITEYAR Unmodified 852.43413 0.43413207 620 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 By MS/MS 3 0 1 1 33.573 33.334 2 0.056138 10352 20211116_3441_TMUAki_TMT10x_S_F3 65.777 14.879 707630 1198700 5474.9 1241200 743030 643150 770290 920340 934040 753810 1029100 658920 1118700 64266 1254300 713470 698320 784990 916770 946430 743070 989760 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 707630 1198700 5474.9 1241200 743030 643150 770290 920340 934040 753810 1029100 658920 1118700 64266 1254300 713470 698320 784990 916770 946430 743070 989760 1 1 1 1 1 1 1 1 1 1 1 17997000 0 17997000 18910 620 17368 96482 116876 116876 1 TITGFQTHTTPVLLAHGER Unmodified 2078.0909 0.090887278 1609 Q13200;Q13200-3;Q13200-2 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 2.5 2 2 2 2 43.553 43.527 4 3.9832E-12 14492 20211116_3441_TMUAki_TMT10x_S_F3 123.19 111.06 4120600 6607300 94736 8010900 8810000 7547900 4899400 5917800 6259300 4946000 6305000 3837300 6170600 486630 8066400 8354300 7681300 5216300 6070000 6309900 4870500 6080800 6 6 5 6 6 6 6 6 6 6 6 2500100 3495200 70104 4513300 7118600 6106300 3471600 3464200 3774100 2914500 3649100 2328400 3265200 337300 4556200 6738200 6063000 3721400 3639100 3821900 2869100 3524000 4 4 4 4 4 4 4 4 4 4 4 1620500 3112100 24631 3497700 1691400 1441700 1427800 2453600 2485200 2031500 2655900 1508900 2905400 149340 3510200 1616100 1618200 1494800 2430900 2488000 2001400 2556800 2 2 1 2 2 2 2 2 2 2 2 462760000 279280000 183470000 18911 1609 17369 96483;96484;96485;96486 116877;116878;116879;116880;116881;116882 116881 6 TITLEVEPSDTIENVK Unmodified 1786.92 0.92002493 1387 P62979;P0CG48;P0CG47;P62987 RPS27A;UBC;UBB;UBA52 Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-C;Ubiquitin;Polyubiquitin-B;Ubiquitin;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40 yes no 0 0 0 0 By MS/MS By MS/MS 2.94 1.39 4 3 4 4 3 9 9 65.982 65.83 2;3 8.74E-162 21304 20211116_3442_TMUAki_TMT10x_S_F4 422.83 341.49 120260000 197130000 1124400 194820000 130140000 188950000 142270000 168820000 159170000 169130000 161420000 111970000 183930000 10291000 198830000 125100000 192400000 144200000 172670000 161270000 165170000 155640000 24 24 12 24 24 24 24 24 24 24 24 56396000 87542000 358590 87687000 59597000 115070000 64490000 76563000 72994000 76249000 72765000 52511000 81686000 4810200 89855000 57273000 114670000 65422000 79778000 73878000 74482000 70200000 11 11 5 11 11 11 11 11 11 11 11 63860000 109590000 765850 107140000 70541000 73887000 77780000 92260000 86176000 92877000 88652000 59460000 102250000 5480400 108970000 67826000 77735000 78777000 92895000 87389000 90683000 85443000 13 13 7 13 13 13 13 13 13 13 13 41394000000 23148000000 18246000000 18912 1387 17370 96487;96488;96489;96490;96491;96492;96493;96494;96495;96496;96497;96498;96499;96500;96501;96502;96503;96504 116883;116884;116885;116886;116887;116888;116889;116890;116891;116892;116893;116894;116895;116896;116897;116898;116899;116900;116901;116902;116903;116904;116905;116906 116900 24 TITTAYYR Unmodified 987.50255 0.50254598 1284 P61006;P61006-2;Q92930;P51153;Q96E17;P20337;O95716;P20336 RAB8A;RAB8B;RAB13;RAB3C;RAB3B;RAB3D;RAB3A Ras-related protein Rab-8A;Ras-related protein Rab-8B;Ras-related protein Rab-13;Ras-related protein Rab-3C;Ras-related protein Rab-3B;Ras-related protein Rab-3D;Ras-related protein Rab-3A yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 36.432 36.844 2 0.0051324 8722 20211116_3436_TMUAki_TMT10x_P_F8 96.111 83.584 841330 1406600 15463 1360700 2230900 1752600 1050200 1116300 1181100 925180 1244600 783430 1312300 98207 1397200 2110000 1747000 1131100 1161400 1198100 911450 1198600 3 3 2 3 3 3 3 3 3 3 3 607100 1010200 5432.7 951480 1978500 1551600 814100 842940 905170 702260 904730 565270 942400 69185 983780 1867800 1527800 889480 888600 916850 691660 872770 2 2 1 2 2 2 2 2 2 2 2 234220 396400 10031 409230 252380 200990 236120 273350 275970 222920 339850 218160 369930 29021 413460 242190 219230 241590 272760 281280 219790 325870 1 1 1 1 1 1 1 1 1 1 1 42227000 35974000 6253500 18913 1284 17371 96505;96506;96507 116907;116908;116909 116908 3 TITVALADGGRPDNTGR Unmodified 1712.8806 0.88056015 1104 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 1 By MS/MS By MS/MS 5.2 0.748 1 2 2 2 3 39.905 40.012 3 1.1573E-47 10832 20211116_3433_TMUAki_TMT10x_P_F5 253.36 232.35 6914200 11204000 29871 13544000 16724000 14372000 8991900 10800000 10753000 9634800 11413000 6436500 10463000 543560 13664000 15831000 14510000 9579600 11126000 10885000 9457900 10989000 7 7 4 7 7 7 7 7 7 7 7 4866300 7593000 26515 9504700 14434000 12596000 6966700 7528600 7646900 6919500 7998800 4529800 7092200 380400 9607600 13642000 12528000 7478100 7892100 7762100 6783000 7705300 3 3 2 3 3 3 3 3 3 3 3 2047900 3610700 3356.7 4039500 2290200 1776000 2025100 3271400 3105800 2715300 3413900 1906700 3370800 163160 4056800 2188700 1982500 2101500 3234000 3123300 2674900 3283700 4 4 2 4 4 4 4 4 4 4 4 1960900000 1117100000 843840000 18914 1104 17372 96508;96509;96510;96511;96512 116910;116911;116912;116913;116914;116915;116916 116910 7 TITYQAVPSEVPNEEPK Unmodified 1900.9418 0.941823 2723 Q9BY44;Q9BY44-3;Q9BY44-4;Q9BY44-2 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 53.123 53.23 3 1.3832E-07 16162 20211116_3442_TMUAki_TMT10x_S_F4 103.04 87.406 5413400 9150500 111590 10245000 8919800 10475000 6330000 8760000 9091700 6931700 8497600 5040900 8542500 562410 10378000 8491800 10618000 6641700 8938400 9107300 6845200 8215700 3 3 2 3 3 3 3 3 3 3 3 3450000 5711900 111590 6014700 6964300 8763800 4835700 5595000 5742200 4587600 5313400 3213100 5330900 439240 6155700 6630900 8687200 5044400 5818400 5786900 4522000 5138900 2 2 2 2 2 2 2 2 2 2 2 1963400 3438600 0 4230600 1955500 1710900 1494300 3165000 3349500 2344200 3184200 1827800 3211600 123170 4222300 1860900 1931100 1597300 3120000 3320500 2323200 3076800 1 1 0 1 1 1 1 1 1 1 1 846410000 494710000 351700000 18915 2723 17373 96513;96514 116917;116918;116919 116919 3 TIVAVEVQDQK Unmodified 1228.6663 0.66631685 1560 Q12756;Q12756-3;Q12756-2 KIF1A Kinesin-like protein KIF1A yes no 0 0 0 0 By MS/MS 4 0 1 1 47.892 48.066 3 0.028963 14040 20211116_3442_TMUAki_TMT10x_S_F4 49.081 20.907 1506400 2543500 29249 2570000 1597500 1625800 1535500 2456800 2183000 1970500 2083900 1402900 2373400 153430 2605800 1532000 1733200 1580900 2441400 2189000 1944500 2013300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1506400 2543500 29249 2570000 1597500 1625800 1535500 2456800 2183000 1970500 2083900 1402900 2373400 153430 2605800 1532000 1733200 1580900 2441400 2189000 1944500 2013300 1 1 1 1 1 1 1 1 1 1 1 107930000 0 107930000 18916 1560 17374 96515 116920 116920 1 TIVEAASDEER Unmodified 1218.5728 0.57281039 2993 Q9NWY4 C4orf27 UPF0609 protein C4orf27 yes yes 0 0 0 0 By MS/MS 2 0 2 2 32.873 32.939 2 3.0982E-06 7324 20211116_3440_TMUAki_TMT10x_S_F2 123.63 85.539 139690 227750 2819.4 255580 138370 118310 163660 127270 128130 136000 193620 130080 212620 11751 256720 133480 129200 163580 129210 134230 132470 184750 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 139690 227750 2819.4 255580 138370 118310 163660 127270 128130 136000 193620 130080 212620 11751 256720 133480 129200 163580 129210 134230 132470 184750 3 3 1 3 3 3 3 3 3 3 3 3030500 0 3030500 18917 2993 17375 96516;96517 116921;116922;116923;116924 116921 4 TIVEELLADSEFRR Unmodified 1676.8733 0.87334951 1924 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 76.743 76.703 3 3.0469E-26 26447 20211116_3429_TMUAki_TMT10x_P_F2 192.65 155.98 1585600 2570900 17985 2644900 2033600 1892400 2064200 1571800 1503000 1859600 1923100 1476500 2399200 154490 2681800 1951700 1967000 2074800 1622900 1568500 1804400 1842200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1585600 2570900 17985 2644900 2033600 1892400 2064200 1571800 1503000 1859600 1923100 1476500 2399200 154490 2681800 1951700 1967000 2074800 1622900 1568500 1804400 1842200 1 1 1 1 1 1 1 1 1 1 1 472540000 0 472540000 18918 1924 17376 96518;96519;96520 116925;116926;116927 116925 3 TIVEFECR Unmodified 1052.4961 0.4960804 2990 Q9NWV4 C1orf123 UPF0587 protein C1orf123 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 45.761 45.761 2 0.00044443 15405 20211116_3441_TMUAki_TMT10x_S_F3 150.88 126.73 9404800 13505000 95104 16362000 15124000 13912000 10301000 12760000 12821000 10681000 13232000 8757200 12612000 910650 16454000 14383000 14297000 10779000 12970000 12947000 10517000 12752000 5 5 4 5 5 5 5 5 5 5 5 4912800 6580000 33657 8323500 11094000 10178000 6461200 6263000 6475700 5086100 6770800 4574200 6146400 487440 8395900 10521000 10167000 6796600 6530200 6597700 5015800 6522400 2 2 1 2 2 2 2 2 2 2 2 4492100 6925100 61447 8038500 4029400 3733100 3839700 6497300 6345100 5594800 6461300 4183000 6466000 423210 8057600 3862500 4130700 3982300 6439500 6349500 5501300 6229400 3 3 3 3 3 3 3 3 3 3 3 467550000 212870000 254680000 18919 2990 17377 96521;96522;96523;96524 116928;116929;116930;116931;116932 116930 5 TIVFVETK Unmodified 935.53278 0.53278348 710 P17844;P17844-2 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 54.615 54.83 2 0.0011946 17793 20211116_3446_TMUAki_TMT10x_S_F7 126.41 62.932 82283000 125620000 71715 145270000 106270000 89945000 75964000 88126000 91698000 73435000 105330000 76608000 117290000 6436000 145980000 101090000 95001000 79125000 89252000 93083000 72326000 101190000 6 6 3 6 6 6 6 6 6 6 6 23841000 36295000 65923 42335000 54126000 47315000 26788000 25871000 26516000 21345000 30141000 22199000 33890000 2462200 42837000 51215000 47413000 28593000 27251000 27116000 21033000 28964000 2 2 2 2 2 2 2 2 2 2 2 58442000 89329000 5792.1 102930000 52141000 42629000 49176000 62255000 65183000 52090000 75192000 54409000 83404000 3973800 103140000 49870000 47589000 50532000 62002000 65967000 51293000 72225000 4 4 1 4 4 4 4 4 4 4 4 4150900000 1743900000 2407000000 18920 710 17378 96525;96526;96527;96528;96529;96530 116933;116934;116935;116936;116937;116938;116939 116939 7 TIVFVETKR Unmodified 1091.6339 0.63389451 710 P17844;P17844-2 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 1 By MS/MS By MS/MS 4 3.29 2 1 2 2 3 43.623 43.624 3 0.00034758 11505 20211116_3436_TMUAki_TMT10x_P_F8 117.02 88.279 6194600 10199000 70083 8018900 9454000 12059000 6954500 10850000 9618400 8649400 9040300 5768300 9508800 624540 8395000 9006300 12008000 7267400 11026000 9647900 8538100 8738700 4 4 4 4 4 4 4 4 4 4 4 3338000 5299000 19270 4246700 5828300 8359000 3817000 5684400 5178200 4751700 4697600 3108200 4940600 329580 4468200 5539000 8201900 4019000 5886500 5191300 4679200 4546400 2 2 2 2 2 2 2 2 2 2 2 2856600 4900200 50812 3772100 3625700 3699900 3137500 5165200 4440200 3897600 4342700 2660100 4568200 294960 3926800 3467300 3806600 3248400 5139700 4456700 3858800 4192300 2 2 2 2 2 2 2 2 2 2 2 522800000 305760000 217040000 18921 710 17379 96531;96532;96533;96534;96535 116940;116941;116942;116943 116941 4 TIVITSHPGQIVK Unmodified 1391.8136 0.81364979 889 P31689;P31689-2 DNAJA1 DnaJ homolog subfamily A member 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.6 2.24 2 2 1 4 1 44.257 44.25 3 2.7502E-28 13258 20211116_3429_TMUAki_TMT10x_P_F2 205.96 167.77 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18922 889 17380 96536;96537;96538;96539;96540 116944;116945;116946;116947;116948 116947 5 TIVMGASFR Oxidation (M) 996.50625 0.50625115 966 P37837 TALDO1 Transaldolase yes yes 0 0 1 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 38.463 38.824 2 0.0013534 9526 20211116_3436_TMUAki_TMT10x_P_F8 107.69 72.2 1185900 2086600 9259.6 2096500 2593000 2573100 1573900 1891400 1828900 1563300 1878000 1104200 1947100 122320 2145200 2460900 2576600 1657700 1947600 1851200 1540300 1810200 3 3 2 3 3 3 3 3 3 3 3 801370 1403800 3576.1 1373600 2196500 2250200 1215600 1293000 1232400 1056300 1255800 746140 1309800 84982 1416600 2081400 2216800 1284900 1355800 1253800 1041400 1210700 2 2 1 2 2 2 2 2 2 2 2 384490 682750 5683.5 722880 396470 322920 358300 598430 596510 506950 622290 358040 637230 37342 728640 379540 359830 372810 591800 597340 498890 599500 1 1 1 1 1 1 1 1 1 1 1 84061000 56520000 27541000 18923 966 17381 96541;96542;96543 116949;116950;116951 116950 1222 3 TIVQLENEIYQIK Unmodified 1589.8665 0.86647322 368 O75934 BCAS2 Pre-mRNA-splicing factor SPF27 yes yes 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 78.4 78.411 2;3 2.2578E-06 25194 20211116_3444_TMUAki_TMT10x_S_F5 117.52 77.735 3949400 6476100 0 6182900 4887600 4315500 4939800 3716700 3846200 3856400 5254100 3677200 6041800 333310 6300300 4687300 4498100 4974100 3813300 4010700 3760600 5024800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3949400 6476100 0 6182900 4887600 4315500 4939800 3716700 3846200 3856400 5254100 3677200 6041800 333310 6300300 4687300 4498100 4974100 3813300 4010700 3760600 5024800 1 1 0 1 1 1 1 1 1 1 1 739580000 0 739580000 18924 368 17382 96544;96545 116952;116953 116952 2 TIVTDVFQGSMR Unmodified 1352.6758 0.67583567 1906 Q53GS9;Q53GS9-2;Q53GS9-3 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 0 0 0 0 By MS/MS 8 0 1 1 63.522 63.703 2 0.0018364 19673 20211116_3436_TMUAki_TMT10x_P_F8 77.358 50.975 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18925 1906 17383 96546 116954 116954 1 TIVTNEYMKDDFFIK Oxidation (M) 1878.9074 0.90735175 1084 P48739;P48739-2;P48739-3 PITPNB Phosphatidylinositol transfer protein beta isoform yes no 0 0 1 1 By MS/MS By MS/MS 6.8 0.748 2 2 1 3 2 63.819 63.962 3 0.00031253 20908 20211116_3435_TMUAki_TMT10x_P_F7 73.156 46.721 28036000 48235000 0 45650000 33395000 43641000 32323000 39106000 39886000 39863000 38854000 26101000 44999000 2021700 46723000 31969000 44481000 33077000 40012000 40209000 38901000 37513000 3 3 0 3 3 3 3 3 3 3 3 10126000 16055000 0 16162000 10820000 21747000 11665000 13526000 11946000 13271000 14040000 9427400 14982000 747770 16564000 10389000 21625000 11797000 14160000 12215000 12972000 13479000 1 1 0 1 1 1 1 1 1 1 1 17910000 32180000 0 29488000 22575000 21894000 20658000 25580000 27940000 26592000 24814000 16674000 30018000 1273900 30159000 21580000 22856000 21280000 25853000 27995000 25929000 24034000 2 2 0 2 2 2 2 2 2 2 2 2700100000 691390000 2008700000 18926 1084 17384 96547;96548;96549;96550;96551 116955;116956;116957;116958;116959 116956 1412 5 TKATIELK Unmodified 902.54368 0.54368251 1154 P51532-5;P51532-2;P51532-3;P51532-4;P51532 SMARCA4 Transcription activator BRG1 yes no 0 0 0 1 By MS/MS 7 0 1 1 37.634 38.072 3 0.050086 10581 20211116_3435_TMUAki_TMT10x_P_F7 56.043 24.549 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18927 1154 17385 96552 116960 116960 1 TKDDIIICEIGDVFK Unmodified 1764.8968 0.89678707 3310 Q9Y512 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 78.143 78.162 3 0.0092173 26221 20211116_3433_TMUAki_TMT10x_P_F5 57.148 40.069 5723100 10470000 56469 7877300 6314400 12169000 8219300 7155300 7102800 7851400 8362200 5329200 9759700 535390 8283400 6105900 12020000 8203000 7548900 7319400 7639400 8027700 1 1 1 1 1 1 1 1 1 1 1 5723100 10470000 56469 7877300 6314400 12169000 8219300 7155300 7102800 7851400 8362200 5329200 9759700 535390 8283400 6105900 12020000 8203000 7548900 7319400 7639400 8027700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 616100000 616100000 0 18928 3310 17386 96553;96554 116961;116962 116961 2 TKDEYLINSQTTEHIVK Unmodified 2018.032 0.032034995 2942 Q9NSE4 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 0 0 0 1 By MS/MS 6 0 1 1 45.782 45.947 4 1.1147E-10 12125 20211116_3445_TMUAki_TMT10x_S_F6 124.93 104.83 3107200 5463600 44309 6613200 2536600 2261000 2221300 4266500 4656300 3995500 4599100 2893500 5102400 290910 6600300 2426900 2616900 2345000 4228500 4628400 3913400 4438300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3107200 5463600 44309 6613200 2536600 2261000 2221300 4266500 4656300 3995500 4599100 2893500 5102400 290910 6600300 2426900 2616900 2345000 4228500 4628400 3913400 4438300 2 2 2 2 2 2 2 2 2 2 2 136330000 0 136330000 18929 2942 17387 96555 116963;116964 116963 2 TKDGLEVAVLPHNIR Unmodified 1660.9261 0.92605378 1726 Q14690 PDCD11 Protein RRP5 homolog yes yes 0 0 0 1 By MS/MS By matching 6.5 0.5 1 1 1 1 45.749 46.042 4 0.00036937 11817 20211116_3434_TMUAki_TMT10x_P_F6 80.102 59.971 1583300 2791700 0 2266100 3058800 3485800 2316600 2233000 2060500 2113600 2495900 1474000 2603000 127780 2367200 2912600 3447700 2380700 2330000 2122800 2069100 2394200 1 1 0 1 1 1 1 1 1 1 1 1583300 2791700 0 2266100 3058800 3485800 2316600 2233000 2060500 2113600 2495900 1474000 2603000 127780 2367200 2912600 3447700 2380700 2330000 2122800 2069100 2394200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1197400000 398720000 798650000 18930 1726 17388 96556;96557 116965 116965 1 TKDGQILPVPNVVVR Unmodified 1633.9515 0.95154025 3056 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.04 2 2 2 2 4 4 54.564 54.449 3 6.5484E-11 16085 20211116_3440_TMUAki_TMT10x_S_F2 140.43 122.07 95106000 150530000 555180 152400000 148840000 177370000 110830000 146170000 138600000 137270000 138090000 88555000 140460000 8795800 155710000 141770000 178450000 115270000 149920000 139770000 134430000 133220000 13 13 6 13 13 13 13 13 13 13 13 52288000 81869000 166740 80981000 106740000 138530000 77120000 79325000 78878000 76714000 74675000 48684000 76389000 4953100 83537000 101590000 136250000 79829000 83562000 80019000 75031000 72166000 6 6 3 6 6 6 6 6 6 6 6 42818000 68658000 388440 71417000 42101000 38837000 33710000 66844000 59725000 60553000 63412000 39870000 64075000 3842700 72175000 40177000 42203000 35437000 66361000 59752000 59399000 61057000 7 7 3 7 7 7 7 7 7 7 7 15007000000 7950700000 7055900000 18931 3056 17389 96558;96559;96560;96561;96562;96563;96564;96565 116966;116967;116968;116969;116970;116971;116972;116973;116974;116975;116976;116977;116978;116979;116980 116976 15 TKDIEDVFYK Unmodified 1256.6289 0.62886871 1543 Q07955;Q07955-3;Q07955-2 SRSF1 Serine/arginine-rich splicing factor 1 yes no 0 0 0 1 By MS/MS By MS/MS 5.5 1.12 2 2 2 2 4 4 56.53 56.762 3 0.00033699 17985 20211116_3435_TMUAki_TMT10x_P_F7 101.89 68.693 110810000 180300000 1442400 213950000 204150000 192790000 119300000 223450000 238590000 182300000 200230000 103190000 168370000 11409000 215570000 193670000 198400000 129140000 224410000 236140000 179740000 194340000 10 10 6 10 10 10 10 10 10 10 10 45832000 68926000 521310 83120000 150690000 142250000 78300000 91273000 96654000 73354000 77587000 42676000 64369000 5508100 84678000 142680000 140120000 83776000 94837000 96849000 72379000 75435000 4 4 2 4 4 4 4 4 4 4 4 64983000 111370000 921130 130830000 53459000 50547000 41000000 132170000 141930000 108950000 122650000 60511000 104000000 5901000 130900000 50990000 58280000 45364000 129570000 139290000 107360000 118910000 6 6 4 6 6 6 6 6 6 6 6 11856000000 6904100000 4951600000 18932 1543 17390 96566;96567;96568;96569;96570;96571;96572;96573 116981;116982;116983;116984;116985;116986;116987;116988;116989;116990 116984 10 TKDLPVTEAVFSALVTGHAR Unmodified 2111.1375 0.13750312 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 71.415 71.217 4 1.5161E-12 22995 20211116_3440_TMUAki_TMT10x_S_F2 122.53 111.23 5492200 9778800 102510 8676300 6895700 10643000 7425500 7685200 6660100 6916800 7910100 5114600 9120600 570530 8958500 6631400 10655000 7480600 7940000 6853400 6787000 7591900 3 3 3 3 3 3 3 3 3 3 3 3342500 5678200 44746 5236800 3840900 7653500 4652200 4905000 4270500 4437000 4771700 3112500 5296700 325800 5409700 3705900 7586000 4664700 5111800 4379000 4352600 4587600 2 2 2 2 2 2 2 2 2 2 2 2149800 4100600 57761 3439500 3054800 2989600 2773300 2780100 2389700 2479900 3138400 2002100 3823900 244740 3548900 2925500 3068700 2815900 2828200 2474400 2434400 3004300 1 1 1 1 1 1 1 1 1 1 1 1842900000 768400000 1074500000 18933 1018 17391 96574;96575 116991;116992;116993 116993 3 TKDTPLSLACSGGR Unmodified 1461.7246 0.72457678 314 O75179;O75179-3;O75179-6;O75179-7;O75179-2;Q8IWZ3;Q8IWZ3-6;Q8IWZ3-4 ANKRD17;ANKHD1 Ankyrin repeat domain-containing protein 17;Ankyrin repeat and KH domain-containing protein 1 yes no 0 0 0 1 By MS/MS 8 0 1 1 39.104 39.359 3 1.2559E-19 9780 20211116_3436_TMUAki_TMT10x_P_F8 149 124.21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18934 314 17392 96576 116994 116994 1 TKEEALELINGYIQK Unmodified 1747.9356 0.93561541 1642 Q13526 PIN1 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 yes yes 0 0 0 1 By MS/MS By MS/MS 6 2.92 1 1 2 1 3 76.654 76.642 3 2.2205E-07 26846 20211116_3446_TMUAki_TMT10x_S_F7 119.65 98.349 37090000 62343000 472080 56623000 46791000 46794000 43549000 40451000 39115000 40680000 47224000 34537000 58151000 3530200 58022000 44805000 48135000 44206000 41454000 40274000 39721000 45304000 7 7 3 7 7 7 7 7 7 7 7 9139600 14563000 314190 14286000 9404600 16993000 10837000 9209500 10442000 10402000 11630000 8512200 13588000 1054300 14634000 9072600 16970000 10905000 9792100 10683000 10110000 11182000 1 1 1 1 1 1 1 1 1 1 1 27951000 47780000 157890 42337000 37387000 29801000 32712000 31241000 28673000 30278000 35594000 26025000 44564000 2476000 43388000 35732000 31165000 33301000 31662000 29592000 29611000 34122000 6 6 2 6 6 6 6 6 6 6 6 4306100000 1603800000 2702300000 18935 1642 17393 96577;96578;96579;96580 116995;116996;116997;116998;116999;117000;117001 116998 7 TKENILEEFSK Unmodified 1336.6874 0.68744622 211 O43390;O43390-2;O43390-3;O43390-4 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 1 By MS/MS By MS/MS 5.71 1.03 1 2 2 2 4 3 58.421 58.676 3 0.00013464 16983 20211116_3434_TMUAki_TMT10x_P_F6 96.135 62.594 148210000 246290000 1358700 227240000 265560000 326110000 192630000 271160000 297270000 253890000 233780000 138000000 229740000 14497000 234650000 252850000 324350000 201890000 277500000 295590000 248670000 226930000 15 15 9 15 14 14 14 14 15 15 14 89140000 146730000 972960 134520000 216840000 274410000 149110000 165760000 171630000 147360000 141870000 83002000 136870000 9573000 140190000 206240000 268480000 155480000 173470000 172560000 144680000 137780000 9 9 4 9 9 9 9 9 9 9 9 59068000 99554000 385690 92720000 48716000 51702000 43523000 105400000 125640000 106520000 91904000 54999000 92869000 4923900 94459000 46604000 55867000 46410000 104030000 123030000 103990000 89150000 6 6 5 6 5 5 5 5 6 6 5 7024800000 4323600000 2701200000 18936 211 17394 96581;96582;96583;96584;96585;96586;96587 117002;117003;117004;117005;117006;117007;117008;117009;117010;117011;117012;117013;117014;117015;117016 117008 15 TKEQILEEFSK Unmodified 1350.7031 0.70309628 271;272 O60506;O60506-2;O60506-3;O60506-4;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 1 By MS/MS By MS/MS 7 0.632 1 3 1 1 4 68.282 68.534 3 5.9916E-05 18105 20211116_3445_TMUAki_TMT10x_S_F6 99.991 83.049 19065000 31142000 390760 31765000 26942000 30538000 20351000 32996000 35049000 29727000 29872000 17754000 29061000 2055100 32343000 25691000 31241000 21442000 33326000 34830000 29167000 28977000 4 4 4 4 4 4 4 4 4 4 4 8018400 12392000 76714 13046000 17016000 20355000 12107000 11557000 12904000 10547000 11157000 7466500 11566000 862300 13372000 16197000 20088000 12562000 12164000 13031000 10342000 10817000 1 1 1 1 1 1 1 1 1 1 1 11047000 18750000 314040 18719000 9925400 10182000 8243300 21439000 22145000 19180000 18715000 10288000 17496000 1192800 18971000 9493700 11153000 8879900 21162000 21799000 18825000 18160000 3 3 3 3 3 3 3 3 3 3 3 2022200000 730540000 1291700000 18937 271;272 17395 96588;96589;96590;96591;96592 117017;117018;117019;117020;117021;117022 117018 6 TKEQLGYIVFSGPR Unmodified 1593.8515 0.85149185 675 P14735;P14735-2 IDE Insulin-degrading enzyme yes no 0 0 0 1 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 57.414 57.096 3 4.2631E-06 18975 20211116_3430_TMUAki_TMT10x_P_F3 103.61 83.502 8061000 15038000 131190 10676000 10982000 15090000 12152000 13017000 11545000 11833000 12165000 7506600 14016000 831480 11265000 10567000 15054000 12246000 13304000 11793000 11606000 11716000 2 2 2 2 2 2 2 2 2 2 2 3973400 7564700 39364 5299900 5739700 10058000 6437600 6606200 5821200 6244800 6167600 3699900 7050200 390840 5637900 5523400 9875500 6474300 6880100 5961300 6113900 5939000 1 1 1 1 1 1 1 1 1 1 1 4087600 7473200 91827 5376000 5242000 5031600 5714400 6411200 5723600 5588200 5997800 3806700 6965500 440640 5627400 5043700 5178100 5772000 6424200 5832100 5491700 5777300 1 1 1 1 1 1 1 1 1 1 1 792600000 469310000 323290000 18938 675 17396 96593;96594;96595 117023;117024;117025 117023 3 TKEVYELLDSPGK Unmodified 1477.7664 0.76642482 767 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 0 1 By MS/MS By MS/MS 5.88 1.05 1 2 2 3 5 3 58.041 58.33 3;4 4.6739E-12 18620 20211116_3435_TMUAki_TMT10x_P_F7 155.56 135.77 25761000 43570000 487900 42332000 51597000 63853000 36505000 57114000 58034000 46773000 46009000 23989000 40651000 2939800 43595000 49123000 63570000 38484000 58100000 57671000 46107000 44756000 7 7 6 7 7 7 7 7 7 7 7 16717000 26979000 286070 26191000 43419000 54896000 30184000 35191000 35567000 28316000 28150000 15567000 25171000 2014000 27204000 41316000 53711000 31476000 36569000 35685000 27938000 27385000 5 5 4 5 5 5 5 5 5 5 5 9043400 16591000 201840 16141000 8178400 8957300 6320400 21923000 22467000 18457000 17859000 8421800 15480000 925750 16391000 7807300 9859600 7008100 21532000 21986000 18169000 17370000 2 2 2 2 2 2 2 2 2 2 2 5660500000 4240400000 1420100000 18939 767 17397 96596;96597;96598;96599;96600;96601;96602;96603 117026;117027;117028;117029;117030;117031;117032;117033 117029 8 TKFFEDLILK Unmodified 1252.7067 0.7067251 2014 Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 yes yes 0 0 0 1 By MS/MS 8 0 1 1 74.494 74.516 3 0.00097174 24151 20211116_3436_TMUAki_TMT10x_P_F8 80.469 50.031 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18940 2014 17398 96604 117034 117034 1 TKFPAEQYYR Unmodified 1301.6404 0.64043645 1818 Q15631;Q15631-2 TSN Translin yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 39.091 39.436 3 0.0051311 11077 20211116_3435_TMUAki_TMT10x_P_F7 67.999 45.972 6766800 10825000 69753 13080000 16204000 14307000 9089300 8291400 11074000 7733600 10814000 6301000 10110000 747500 13203000 15362000 14364000 9653200 8717000 11170000 7576100 10440000 3 3 2 3 3 3 3 3 3 3 3 5448300 8707500 24019 10388000 15210000 13212000 7965600 6434000 8717400 5966500 8613500 5073000 8131300 600110 10521000 14403000 13133000 8481900 6869700 8831900 5846500 8312300 2 2 1 2 2 2 2 2 2 2 2 1318500 2117900 45733 2692000 994260 1094400 1123800 1857500 2356900 1767100 2200600 1228000 1978400 147390 2681900 959370 1230600 1171300 1847300 2338200 1729600 2127600 1 1 1 1 1 1 1 1 1 1 1 523770000 357650000 166120000 18941 1818 17399 96605;96606;96607 117035;117036;117037 117035 3 TKFTIENVTR Unmodified 1207.6561 0.65608651 2935 Q9NRX1 PNO1 RNA-binding protein PNO1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 1 3 41.887 41.796 3 0.00082759 10205 20211116_3447_TMUAki_TMT10x_S_F8 81.565 58.329 2127500 3452000 12585 3785300 4056800 3109700 2336800 2488900 2342100 2060100 4793000 1980900 3222300 200640 3828000 3846400 3195700 2460400 2549100 2469400 2029600 4547800 2 2 1 2 2 2 2 2 2 2 2 1282300 1987600 12585 2227800 3092700 2445800 1504700 1439500 1371800 1164400 2313700 1194000 1855600 143400 2259000 2926200 2455500 1605200 1506100 1434800 1148600 2202800 1 1 1 1 1 1 1 1 1 1 1 845200 1464400 0 1557500 964070 663930 832150 1049400 970330 895630 2479300 786840 1366800 57246 1568900 920140 740140 855260 1042900 1034600 881060 2345000 1 1 0 1 1 1 1 1 1 1 1 111040000 58740000 52296000 18942 2935 17400 96608;96609;96610;96611 117038;117039;117040;117041 117041 4 TKFVDGVSTVAR Unmodified 1278.6932 0.6932003 423 O95347 SMC2 Structural maintenance of chromosomes protein 2 yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 3 2 1 39.629 39.865 3 0.0014835 9435 20211116_3447_TMUAki_TMT10x_S_F8 69.045 46.847 517750 899060 12216 980900 1681200 1587200 884860 875760 866650 757800 940240 482170 839230 70605 1004000 1592700 1563600 938620 922790 885070 744970 904740 1 1 1 1 1 1 1 1 1 1 1 517750 899060 12216 980900 1681200 1587200 884860 875760 866650 757800 940240 482170 839230 70605 1004000 1592700 1563600 938620 922790 885070 744970 904740 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39273000 39273000 0 18943 423 17401 96612;96613;96614 117042;117043;117044 117044 3 TKGDFILVGDLMR Unmodified 1463.7806 0.7806351 1847 Q16531;Q16531-2 DDB1 DNA damage-binding protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 5 3.29 2 1 2 2 3 68.264 68.29 3 0.00012791 21563 20211116_3436_TMUAki_TMT10x_P_F8 92.211 63.405 45581000 73061000 75248 69637000 47121000 55837000 45404000 30287000 25188000 32458000 47372000 42440000 68161000 3766000 71077000 45137000 57160000 45519000 32148000 27296000 31611000 45011000 5 5 1 5 5 5 5 5 5 5 5 19584000 31093000 75248 29205000 21145000 33678000 22128000 13631000 11399000 14800000 19851000 18235000 29006000 1685000 29995000 20302000 33582000 22062000 14905000 12366000 14407000 18888000 2 2 1 2 2 2 2 2 2 2 2 25998000 41968000 0 40432000 25976000 22159000 23276000 16657000 13789000 17658000 27520000 24206000 39154000 2081000 41082000 24835000 23577000 23457000 17243000 14930000 17205000 26123000 3 3 0 3 3 3 3 3 3 3 3 2967200000 1668400000 1298800000 18944 1847 17402 96615;96616;96617;96618;96619 117045;117046;117047;117048;117049 117046 5 TKGDFILVGDLMR Oxidation (M) 1479.7755 0.77554972 1847 Q16531;Q16531-2 DDB1 DNA damage-binding protein 1 yes no 0 0 1 1 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 57.67 57.981 3 0.013302 17113 20211116_3445_TMUAki_TMT10x_S_F6 58.21 37.151 33495000 58761000 183860 54945000 43576000 58252000 36456000 51980000 52097000 47850000 50022000 31187000 54816000 2898700 56372000 41602000 58998000 37836000 53043000 52242000 46903000 48319000 5 5 3 5 5 5 5 5 5 5 5 16021000 27291000 166120 25859000 23630000 40699000 20986000 23790000 24023000 22468000 24029000 14918000 25460000 1476900 26704000 22594000 40166000 21519000 25002000 24307000 21998000 23180000 3 3 2 3 3 3 3 3 3 3 3 17474000 31470000 17735 29086000 19946000 17553000 15470000 28190000 28073000 25382000 25993000 16269000 29356000 1421800 29668000 19008000 18832000 16317000 28041000 27935000 24905000 25139000 2 2 1 2 2 2 2 2 2 2 2 3814200000 2277900000 1536300000 18945 1847 17402 96620;96621;96622;96623;96624 117050;117051;117052 117051 2460 3 TKGTSSFGK Unmodified 911.47125 0.47124585 1322 P61927 RPL37 60S ribosomal protein L37 yes yes 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 32.088 32.024 3 0.00095775 8303 20211116_3429_TMUAki_TMT10x_P_F2 93.345 75.909 3315600 5653000 36697 4045700 4404600 5591600 3700800 3379700 3418100 3218800 4344600 3087400 5268800 324340 4263900 4207900 5551300 3782000 3543000 3522600 3150300 4162400 4 4 4 4 4 4 4 4 4 4 4 2452700 4052000 21237 2827600 3351800 4601600 2799200 2278200 2385200 2205200 3086100 2283800 3776400 235730 2997600 3201200 4526100 2855400 2431400 2469500 2156700 2955400 3 3 3 3 3 3 3 3 3 3 3 862950 1601000 15459 1218100 1052800 990050 901670 1101400 1032900 1013600 1258500 803610 1492400 88611 1266300 1006600 1025200 926560 1111600 1053000 993560 1207100 1 1 1 1 1 1 1 1 1 1 1 126340000 101340000 24997000 18946 1322 17403 96625;96626;96627 117053;117054;117055;117056 117054 4 TKGVDEVTIVNILTNR Unmodified 1770.984 0.98396259 537 P07355;P07355-2 ANXA2 Annexin A2 yes no 0 0 0 1 By MS/MS 8 0 1 1 69.604 69.436 3 4.1839E-08 21549 20211116_3447_TMUAki_TMT10x_S_F8 119.38 103.62 3469300 5864800 153390 4629900 4964000 4571800 4372000 4770700 4909100 5016300 4984800 3231400 5467900 451520 4809600 4754100 4665500 4482300 4847800 4973300 4889000 4806300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3469300 5864800 153390 4629900 4964000 4571800 4372000 4770700 4909100 5016300 4984800 3231400 5467900 451520 4809600 4754100 4665500 4482300 4847800 4973300 4889000 4806300 1 1 1 1 1 1 1 1 1 1 1 550370000 0 550370000 18947 537 17404 96628 117057 117057 1 TKIDCDNLEQYFIQQGGGPDK Unmodified 2425.122 0.12198899 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 1 By MS/MS By MS/MS 6 1.37 3 4 3 4 3 9 8 67.122 67.251 3;4 5.6945E-35 22896 20211116_3446_TMUAki_TMT10x_S_F7 189.51 176.83 184290000 292720000 1810100 307380000 170200000 180610000 162210000 98506000 86110000 100060000 170870000 171590000 273190000 15226000 310650000 163010000 189970000 162600000 104340000 93940000 97656000 162210000 25 25 17 25 25 25 25 25 25 25 25 81589000 127390000 670170 129390000 64091000 104940000 74528000 44680000 41187000 45940000 74529000 75965000 118870000 6162600 131490000 61693000 107060000 74019000 48506000 44543000 44816000 70863000 12 12 7 12 12 12 12 12 12 12 12 102700000 165330000 1139900 178000000 106110000 75666000 87681000 53826000 44923000 54115000 96339000 95627000 154320000 9063400 179160000 101310000 82904000 88579000 55837000 49397000 52840000 91343000 13 13 10 13 13 13 13 13 13 13 13 36992000000 17252000000 19740000000 18948 2334 17405 96629;96630;96631;96632;96633;96634;96635;96636;96637;96638;96639;96640;96641;96642;96643;96644;96645 117058;117059;117060;117061;117062;117063;117064;117065;117066;117067;117068;117069;117070;117071;117072;117073;117074;117075;117076;117077;117078;117079;117080;117081;117082 117080 25 TKIDCDNLEQYFIQQGGGPDKK Unmodified 2553.217 0.21695201 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 2 By MS/MS By MS/MS 5.92 2.11 3 2 2 6 7 6 12 14 62.684 62.858 3;4;5;6 3.2895E-19 18342 20211116_3447_TMUAki_TMT10x_S_F8 148.52 129.48 787340000 1398600000 7694800 1221200000 910440000 1152700000 801800000 650480000 537480000 607320000 877720000 733110000 1304400000 64404000 1257300000 870400000 1167200000 810800000 685420000 570430000 594920000 836170000 50 50 30 50 50 50 50 50 50 50 50 396380000 693780000 4947100 599930000 451130000 757110000 456690000 323750000 271570000 308050000 428170000 369100000 647020000 32205000 621000000 432940000 751860000 457220000 350570000 289930000 301500000 408190000 27 27 15 27 27 27 27 27 27 27 27 390960000 704840000 2747800 621220000 459310000 395580000 345100000 326730000 265910000 299270000 449550000 364010000 657380000 32199000 636280000 437460000 415370000 353570000 334850000 280500000 293420000 427980000 23 23 15 23 23 23 23 23 23 23 23 128770000000 66001000000 62770000000 18949 2334 17406 96646;96647;96648;96649;96650;96651;96652;96653;96654;96655;96656;96657;96658;96659;96660;96661;96662;96663;96664;96665;96666;96667;96668;96669;96670;96671 117083;117084;117085;117086;117087;117088;117089;117090;117091;117092;117093;117094;117095;117096;117097;117098;117099;117100;117101;117102;117103;117104;117105;117106;117107;117108;117109;117110;117111;117112;117113;117114;117115;117116;117117;117118;117119;117120;117121;117122;117123;117124;117125;117126;117127;117128;117129;117130;117131;117132 117132 50 TKLEAQAYTAYLSGMLR Oxidation (M) 1930.9822 0.98224803 3116 Q9UHB9;Q9UHB9-4;Q9UHB9-2 SRP68 Signal recognition particle subunit SRP68 yes no 0 0 1 1 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 63.417 63.074 3 0.0047745 20823 20211116_3429_TMUAki_TMT10x_P_F2 59.512 49.173 10924000 18601000 173220 15697000 13156000 21858000 13430000 17376000 16521000 16729000 15589000 10172000 17346000 1098300 16311000 12632000 21787000 13704000 17874000 16639000 16365000 15067000 3 3 3 3 3 3 3 3 3 3 3 6186200 10671000 16259 8860200 7215300 15624000 8339700 9091200 9444000 9407200 8552200 5760100 9950600 542440 9267900 6947600 15353000 8434700 9582500 9527700 9174600 8277600 2 2 2 2 2 2 2 2 2 2 2 4737500 7929800 156960 6837000 5940500 6233900 5090100 8284800 7077200 7321500 7037100 4412300 7395300 555910 7043000 5684200 6433900 5269100 8291100 7111400 7190200 6789700 1 1 1 1 1 1 1 1 1 1 1 1879200000 1338100000 541190000 18950 3116 17407 96672;96673;96674 117133;117134;117135 117133 3138 3 TKLEAQAYTAYLSGMLR Unmodified 1914.9873 0.98733341 3116 Q9UHB9;Q9UHB9-4;Q9UHB9-2 SRP68 Signal recognition particle subunit SRP68 yes no 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 72.933 72.8 3 2.63E-15 24175 20211116_3442_TMUAki_TMT10x_S_F4 146.1 122.96 3586900 6786200 0 6588900 4232600 3235600 4325700 2276900 1607400 2583000 3981100 3339300 6331500 253500 6685600 4057300 3481500 4298700 2372500 1838500 2510100 3767000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3586900 6786200 0 6588900 4232600 3235600 4325700 2276900 1607400 2583000 3981100 3339300 6331500 253500 6685600 4057300 3481500 4298700 2372500 1838500 2510100 3767000 1 1 0 1 1 1 1 1 1 1 1 397780000 0 397780000 18951 3116 17407 96675;96676 117136;117137 117137 2 TKPADMVIEAYGHGQR Unmodified 1771.8676 0.86755262 393 O94903 PROSC Proline synthase co-transcribed bacterial homolog protein yes yes 0 0 0 1 By MS/MS 7 0 1 1 42.487 42.947 4 6.1449E-05 12537 20211116_3435_TMUAki_TMT10x_P_F7 83.968 72.529 904320 1547000 13307 1612000 2378900 2226100 1219000 1240800 1418100 1091800 1347100 842110 1443800 108030 1649100 2252600 2207800 1303300 1306800 1431400 1072500 1301700 1 1 1 1 1 1 1 1 1 1 1 904320 1547000 13307 1612000 2378900 2226100 1219000 1240800 1418100 1091800 1347100 842110 1443800 108030 1649100 2252600 2207800 1303300 1306800 1431400 1072500 1301700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 94665000 94665000 0 18952 393 17408 96677 117138 117138 1 TKPFCCSACPFSSK Unmodified 1675.7157 0.71566835 2792 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein yes yes 0 0 0 1 By MS/MS By matching 3.33 0.471 2 1 1 2 46.087 46.039 3 0.0017703 14372 20211116_3430_TMUAki_TMT10x_P_F3 67.646 55.67 2070200 3044500 25203 4377200 7156200 5774600 3179400 2912000 2699700 2339700 3188000 1927700 2845800 266350 4392300 6763300 5732300 3418000 3088100 2784800 2308700 3060200 2 2 2 2 2 2 2 2 2 2 2 2070200 3044500 25203 4377200 7156200 5774600 3179400 2912000 2699700 2339700 3188000 1927700 2845800 266350 4392300 6763300 5732300 3418000 3088100 2784800 2308700 3060200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 190500000 89951000 100550000 18953 2792 17409 96678;96679;96680 117139;117140 117140 2 TKPFPWGDGNHTLFHNPHVNPLPTGYEDE Unmodified 3315.5374 0.53737494 636 P12074 COX6A1 Cytochrome c oxidase subunit 6A1, mitochondrial yes yes 0 0 0 1 By MS/MS By matching 7 0.707 1 2 1 2 2 60.354 60.673 5 0.002794 19583 20211116_3435_TMUAki_TMT10x_P_F7 51.963 44.602 11441000 19191000 194960 17844000 13544000 17587000 11699000 12689000 8841000 11563000 13852000 10654000 17902000 1159700 18295000 12952000 17822000 11874000 13115000 9297100 11340000 13207000 1 1 1 1 1 1 1 1 1 1 1 11441000 19191000 194960 17844000 13544000 17587000 11699000 12689000 8841000 11563000 13852000 10654000 17902000 1159700 18295000 12952000 17822000 11874000 13115000 9297100 11340000 13207000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8776100000 4847000000 3929100000 18954 636 17410 96681;96682;96683;96684 117141 117141 1 TKPHLFYIPGR Unmodified 1327.7401 0.74009091 2796 Q9H307 PNN Pinin yes yes 0 0 0 1 By MS/MS By MS/MS 3.56 1.07 2 2 3 2 5 4 43.57 43.577 3;4 2.0543E-05 11719 20211116_3431_TMUAki_TMT10x_P_F4 103.08 86.51 9777200 15191000 43735 18595000 24510000 21781000 12465000 15403000 16279000 12766000 15175000 9103100 14187000 963310 18777000 23195000 21849000 13391000 15904000 16355000 12576000 14673000 7 7 3 7 7 7 7 7 7 7 7 7357600 11136000 36605 13835000 22141000 19824000 10727000 11310000 12442000 9375200 11344000 6850400 10401000 786240 14013000 20941000 19635000 11531000 11871000 12544000 9236000 10977000 4 4 2 4 4 4 4 4 4 4 4 2419700 4054100 7130.8 4760300 2368800 1956200 1738000 4093100 3836800 3390600 3830600 2252800 3785600 177070 4764400 2254000 2213800 1860900 4032700 3811300 3340400 3695400 3 3 1 3 3 3 3 3 3 3 3 2408600000 1488500000 920140000 18955 2796 17411 96685;96686;96687;96688;96689;96690;96691;96692;96693 117142;117143;117144;117145;117146;117147;117148 117143 7 TKPIVKPQTSPEYGQGINPISR Unmodified 2409.3016 0.30160833 445 O95793;O95793-2;O95793-3 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes no 0 0 0 2 By MS/MS By MS/MS 2.2 0.748 1 2 2 2 3 45.035 44.87 4 2.3323E-55 13495 20211116_3429_TMUAki_TMT10x_P_F2 225.66 220.17 8505700 15232000 161730 18493000 12427000 14087000 7738600 11248000 12187000 8808600 11631000 7920400 14226000 853710 18570000 11804000 14559000 8232500 11507000 12184000 8703400 11238000 4 4 1 4 4 4 4 4 4 4 4 4304700 7534400 0 8928300 10051000 11459000 5949500 5753800 5896900 4486800 5594800 4007700 7035600 385500 9047700 9530800 11389000 6247600 6100100 5990600 4434200 5406400 2 2 0 2 2 2 2 2 2 2 2 4201000 7697900 161730 9564800 2376400 2628300 1789200 5494600 6290100 4321800 6036700 3912700 7189900 468220 9522100 2273300 3169800 1984900 5406700 6193200 4269300 5831200 2 2 1 2 2 2 2 2 2 2 2 2307200000 1219000000 1088200000 18956 445 17412 96694;96695;96696;96697;96698 117149;117150;117151;117152 117149 4 TKPIWTR Unmodified 900.51814 0.51813647 553;544;1914 P07900;P07900-2;Q14568;Q58FG0;P08238;Q58FF8 HSP90AA1;HSP90AA2P;HSP90AA5P;HSP90AB1;HSP90AB2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-alpha A5;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 no no 0 0 0 1 By MS/MS By MS/MS 2.91 1.38 2 3 2 2 2 6 5 32.661 32.64 2;3 0.0031962 11048 20211116_3441_TMUAki_TMT10x_S_F3 105.52 66.729 57415000 85726000 507200 92400000 108250000 61404000 70316000 23394000 22670000 29513000 65330000 53460000 80016000 5620700 93236000 102850000 63606000 71814000 25887000 26661000 28571000 61701000 10 10 7 9 10 10 9 10 10 10 10 30761000 44677000 339010 46590000 82639000 43211000 39142000 10496000 10471000 14505000 34032000 28642000 41695000 3396000 47252000 78152000 43487000 41071000 12443000 12742000 14001000 32100000 5 5 3 4 5 5 4 5 5 5 5 26654000 41049000 168190 45809000 25615000 18193000 31175000 12898000 12199000 15007000 31298000 24818000 38320000 2224700 45984000 24703000 20119000 30744000 13444000 13919000 14570000 29601000 5 5 4 5 5 5 5 5 5 5 5 4632700000 2676000000 1956800000 18957 544;553;1914 17413 96699;96700;96701;96702;96703;96704;96705;96706;96707;96708;96709 117153;117154;117155;117156;117157;117158;117159;117160;117161;117162;117163 117162 11 TKPIWTRNPDDITNEEYGEFYK Unmodified 2715.2817 0.28166075 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 2 By MS/MS By MS/MS 7 1 1 1 1 1 59.242 59.263 4 9.582E-15 17290 20211116_3434_TMUAki_TMT10x_P_F6 139.02 123.51 5142300 8890900 105020 7848700 7696100 9213600 6667000 5990600 4986500 4969500 6880000 4788800 8292300 559980 8101000 7359800 9229600 6764400 6222900 5213700 4895500 6578300 2 2 2 2 2 2 2 2 2 2 2 3415700 5727800 90653 4966200 4632400 7573300 5056600 3829200 3202100 3068300 4423300 3181000 5341800 384710 5159100 4457900 7470300 5049600 4059500 3382100 3028000 4229200 1 1 1 1 1 1 1 1 1 1 1 1726700 3163200 14369 2882500 3063600 1640300 1610400 2161400 1784400 1901200 2456700 1607800 2950500 175270 2941900 2901900 1759300 1714900 2163400 1831600 1867500 2349100 1 1 1 1 1 1 1 1 1 1 1 1206000000 831610000 374410000 18958 544 17414 96710;96711 117164;117165 117164 2 TKPIWTRNPDDITQEEYGEFYK Unmodified 2729.2973 0.29731082 553 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 2 By MS/MS By MS/MS 6.14 1.25 1 1 2 2 1 5 2 59.634 59.893 4 3.032E-44 17923 20211116_3445_TMUAki_TMT10x_S_F6 199.61 184.1 83379000 137730000 469260 130710000 165630000 114270000 91121000 81633000 62412000 69914000 102090000 77634000 128500000 8050700 133600000 156940000 116690000 95435000 84296000 66158000 68765000 97256000 11 11 6 11 11 11 11 11 11 11 11 48319000 75830000 112900 69898000 53094000 87206000 59893000 48097000 37689000 41923000 57742000 44989000 70735000 3879500 71985000 51067000 86894000 59709000 50691000 40025000 41199000 55081000 7 7 4 7 7 7 7 7 7 7 7 35060000 61905000 356360 60817000 112530000 27065000 31228000 33536000 24724000 27991000 44350000 32645000 57760000 4171100 61616000 105870000 29800000 35726000 33605000 26133000 27566000 42176000 4 4 2 4 4 4 4 4 4 4 4 10642000000 6263600000 4378200000 18959 553 17415 96712;96713;96714;96715;96716;96717;96718 117166;117167;117168;117169;117170;117171;117172;117173;117174;117175;117176 117174 11 TKPMLETEVLDNDGGGLATIFEP Oxidation (M) 2462.1887 0.18867157 2852 Q9HAV4 XPO5 Exportin-5 yes yes 0 0 1 1 By MS/MS By MS/MS 2.33 0.943 1 2 1 2 79.16 79.087 3 1.3738E-05 27876 20211116_3439_TMUAki_TMT10x_S_F1 75.646 61.032 2245400 3604200 26716 3276300 2125200 4888100 2550500 2345100 2619700 3005000 3313100 2090600 3361800 182050 3389700 2048300 4823100 2567000 2532400 2686700 2907600 3174600 2 2 1 2 2 2 2 2 2 2 2 2245400 3604200 26716 3276300 2125200 4888100 2550500 2345100 2619700 3005000 3313100 2090600 3361800 182050 3389700 2048300 4823100 2567000 2532400 2686700 2907600 3174600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 646030000 646030000 0 18960 2852 17416 96719;96720;96721 117177;117178;117179;117180 117179 2980 4 TKPPEGYDTVTLYPK Unmodified 1707.872 0.87195252 1904 Q53GG5-2;Q53GG5 PDLIM3 PDZ and LIM domain protein 3 yes no 0 0 0 1 By MS/MS By MS/MS 7 0 5 3 2 50.266 50.833 3;4 1.8499E-06 16177 20211116_3446_TMUAki_TMT10x_S_F7 105.31 84.663 12703000 21789000 149650 23729000 21090000 24552000 15807000 22029000 22364000 19049000 20124000 11828000 20339000 1281000 24083000 20097000 24905000 16513000 22436000 22386000 18727000 19482000 4 4 3 4 4 4 4 4 4 4 4 6781300 11935000 138120 12715000 16394000 19376000 11912000 11932000 12200000 10186000 11165000 6315100 11140000 825570 13016000 15615000 19161000 12327000 12455000 12362000 10020000 10802000 2 2 2 2 2 2 2 2 2 2 2 5921200 9854000 11534 11014000 4696600 5176600 3894400 10097000 10164000 8862900 8959200 5513100 9199200 455480 11067000 4482000 5744200 4186300 9980600 10023000 8706900 8679900 2 2 1 2 2 2 2 2 2 2 2 1209400000 591860000 617490000 18961 1904 17417 96722;96723;96724;96725;96726 117181;117182;117183;117184;117185 117184 5 TKPSDEEMLFIYGHYK Oxidation (M) 1972.9241 0.92406445 530 P07108;P07108-5;P07108-3;P07108-2;P07108-4;P07108-6 DBI Acyl-CoA-binding protein yes no 0 0 1 1 By MS/MS By MS/MS 6 1.54 1 1 2 2 3 2 6 5 50.953 51.166 3;4 8.2045E-08 14308 20211116_3445_TMUAki_TMT10x_S_F6 117.37 105.21 124560000 207110000 852270 221580000 179500000 220150000 140250000 200150000 207520000 179930000 184320000 115960000 193310000 9789000 225010000 171040000 223920000 146400000 203900000 207350000 176560000 178530000 21 21 11 21 21 21 21 21 21 21 21 60944000 94101000 145380 99988000 114410000 150310000 75589000 87281000 90888000 78724000 84961000 56733000 87828000 4325500 102340000 108630000 148600000 79177000 91666000 91583000 77238000 82142000 9 9 3 9 9 9 9 9 9 9 9 63611000 113010000 706890 121600000 65087000 69847000 64660000 112870000 116630000 101200000 99360000 59230000 105480000 5463600 122670000 62409000 75314000 67219000 112240000 115770000 99320000 96383000 12 12 8 12 12 12 12 12 12 12 12 20905000000 13271000000 7634600000 18962 530 17418 96727;96728;96729;96730;96731;96732;96733;96734;96735;96736;96737 117186;117187;117188;117189;117190;117191;117192;117193;117194;117195;117196;117197;117198;117199;117200;117201;117202;117203;117204;117205;117206 117200 451 21 TKPSDEEMLFIYGHYK Unmodified 1956.9291 0.92914983 530 P07108;P07108-5;P07108-3;P07108-2;P07108-4;P07108-6 DBI Acyl-CoA-binding protein yes no 0 0 0 1 By MS/MS By MS/MS 6.71 1.03 1 2 2 2 3 4 58.225 58.458 4 2.9141E-07 19309 20211116_3446_TMUAki_TMT10x_S_F7 108.63 85.306 120720000 199530000 1014400 214230000 137110000 145600000 141570000 82682000 70303000 86200000 125490000 112410000 186240000 10890000 216480000 131630000 151150000 141170000 87346000 76598000 84043000 119340000 14 14 11 14 14 14 14 14 14 14 14 64401000 104840000 435700 112460000 77874000 96439000 82738000 39708000 31559000 41695000 61462000 59966000 97857000 5816300 113950000 74811000 97959000 82086000 43295000 35407000 40640000 58364000 7 7 5 7 7 7 7 7 7 7 7 56320000 94688000 578750 101760000 59240000 49165000 58836000 42974000 38743000 44505000 64023000 52442000 88380000 5074000 102530000 56815000 53191000 59079000 44051000 41191000 43403000 60978000 7 7 6 7 7 7 7 7 7 7 7 15833000000 8802100000 7031200000 18963 530 17418 96738;96739;96740;96741;96742;96743;96744 117207;117208;117209;117210;117211;117212;117213;117214;117215;117216;117217;117218;117219;117220 117218 14 TKPSPSQFMPLVVDYR Oxidation (M) 1879.9502 0.95021962 2272 Q8TCS8 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial yes yes 0 0 1 1 By MS/MS By MS/MS 2 0 2 1 1 54.562 54.34 3 0.0026263 17343 20211116_3429_TMUAki_TMT10x_P_F2 61.962 45.023 10869000 19037000 60564 16986000 13042000 19752000 11831000 14693000 14978000 14550000 14579000 10120000 17756000 826790 17515000 12468000 19838000 12161000 15190000 15086000 14217000 14076000 3 3 1 3 3 3 3 3 3 3 3 7217700 12343000 0 11135000 8981900 15770000 8631600 9553100 9614600 9211900 9152800 6719100 11513000 461880 11514000 8592900 15640000 8804200 10016000 9721900 9010900 8843700 2 2 0 2 2 2 2 2 2 2 2 3651700 6693800 60564 5851300 4059800 3982700 3199300 5140400 5363200 5338500 5426100 3400500 6242900 364910 6000800 3874700 4198600 3357200 5173900 5363700 5205700 5232400 1 1 1 1 1 1 1 1 1 1 1 1598000000 958510000 639450000 18964 2272 17419 96745;96746 117221;117222;117223 117221 2651 3 TKPSPSQFMPLVVDYR Unmodified 1863.9553 0.955305 2272 Q8TCS8 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 64.925 64.663 3 4.8888E-05 22139 20211116_3430_TMUAki_TMT10x_P_F3 84.895 71.149 8539300 12919000 0 12731000 9157800 11295000 10200000 5928800 6292700 7007500 8772800 7950100 12054000 608250 12980000 8800100 11475000 10171000 6331100 6660700 6799400 8386000 2 2 0 2 2 2 2 2 2 2 2 4592700 6487900 0 6338400 4241000 6585400 5350200 2755500 3028300 3505100 4522900 4275400 6053400 268090 6480500 4087400 6607500 5297100 3017300 3235500 3392400 4316800 1 1 0 1 1 1 1 1 1 1 1 3946600 6431200 0 6392700 4916800 4709700 4849600 3173300 3264300 3502400 4249900 3674600 6000800 340160 6499200 4712800 4867200 4873600 3313800 3425200 3407100 4069200 1 1 0 1 1 1 1 1 1 1 1 609090000 390410000 218680000 18965 2272 17419 96747;96748 117224;117225 117224 2 TKPVTGNLRPEEALQALTIYEGK Unmodified 2527.3646 0.36460252 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 2 By MS/MS By MS/MS 3.44 3.02 4 2 1 2 5 4 68.13 68.091 4;5 3.8598E-36 21468 20211116_3436_TMUAki_TMT10x_P_F8 185.9 129.75 76428000 132990000 789780 111140000 97587000 130830000 95080000 95386000 92335000 93391000 105260000 71165000 124010000 7082800 115210000 93537000 131270000 96490000 98711000 94513000 91292000 101140000 18 18 12 18 18 18 18 18 18 18 18 36911000 62671000 489320 53336000 43152000 79835000 49617000 44097000 43174000 43208000 47840000 34371000 58444000 3533000 55467000 41564000 78893000 49791000 46611000 44370000 42236000 46005000 9 9 7 9 9 9 9 9 9 9 9 39516000 70316000 300460 57799000 54434000 50994000 45463000 51289000 49160000 50183000 57418000 36794000 65566000 3549900 59747000 51973000 52376000 46699000 52099000 50143000 49057000 55133000 9 9 5 9 9 9 9 9 9 9 9 11505000000 7008700000 4496500000 18966 1695 17420 96749;96750;96751;96752;96753;96754;96755;96756;96757 117226;117227;117228;117229;117230;117231;117232;117233;117234;117235;117236;117237;117238;117239;117240;117241;117242;117243 117233 18 TKPYIQVDIGGGQTK Unmodified 1603.857 0.85697116 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 1 By MS/MS By MS/MS 6.22 2.82 2 2 5 5 4 48.921 49.027 2;3;4 7.6503E-32 13749 20211116_3436_TMUAki_TMT10x_P_F8 192.65 172.34 66964000 101920000 1903700 120470000 100290000 102820000 79127000 119610000 106540000 101400000 104020000 62362000 95170000 7538500 121330000 95730000 106220000 82217000 120220000 107090000 99785000 100420000 14 14 9 14 14 14 14 14 14 14 14 23223000 32028000 1170900 39167000 48920000 58156000 30790000 43681000 39468000 34688000 35500000 21631000 29912000 3315100 39737000 46518000 57749000 32448000 44873000 39631000 34249000 34368000 5 5 3 5 5 5 5 5 5 5 5 43741000 69891000 732800 81304000 51371000 44668000 48337000 75925000 67068000 66714000 68516000 40731000 65258000 4223400 81590000 49212000 48467000 49769000 75342000 67461000 65536000 66050000 9 9 6 9 9 9 9 9 9 9 9 9094700000 4719200000 4375500000 18967 614 17421 96758;96759;96760;96761;96762;96763;96764;96765;96766 117244;117245;117246;117247;117248;117249;117250;117251;117252;117253;117254;117255;117256;117257;117258 117249 15 TKSENGLEFTSSGSANTETTKVTGSLETK Unmodified 3003.452 0.45203314 760 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 0 0 0 2 By MS/MS By matching 6 0 2 1 1 50.143 50.268 4 6.9705E-13 13604 20211116_3434_TMUAki_TMT10x_P_F6 110.08 98.111 1046500 2014900 0 1157100 1978800 3381800 1732100 3233100 2912500 2203400 2013300 974200 1876900 79796 1274300 1889900 3304600 1806400 3263900 2879400 2194400 1970000 1 1 0 1 1 1 1 1 1 1 1 1046500 2014900 0 1157100 1978800 3381800 1732100 3233100 2912500 2203400 2013300 974200 1876900 79796 1274300 1889900 3304600 1806400 3263900 2879400 2194400 1970000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 772590000 362050000 410550000 18968 760 17422 96767;96768 117259 117259 1 TKSTGGAPTFNVTVTK Unmodified 1607.8519 0.85188578 540 P07737 PFN1 Profilin-1 yes yes 0 0 0 1 By matching By MS/MS 2.5 0.5 2 2 1 3 45.172 44.959 3 0.00070532 12247 20211116_3440_TMUAki_TMT10x_S_F2 68.567 54.888 384250 735690 11373 735900 478800 478840 331670 1216800 1145200 867920 820060 357860 686480 43781 746880 456090 520250 369310 1189500 1117900 862030 801140 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 384250 735690 11373 735900 478800 478840 331670 1216800 1145200 867920 820060 357860 686480 43781 746880 456090 520250 369310 1189500 1117900 862030 801140 1 1 1 1 1 1 1 1 1 1 1 191920000 62335000 129580000 18969 540 17423 96769;96770;96771;96772 117260;117261 117260 2 TKTDELLALGR Unmodified 1215.6823 0.68230126 641 P12270;P12270-2 TPR Nucleoprotein TPR yes no 0 0 0 1 By MS/MS By MS/MS 5.4 0.49 3 2 3 2 49.286 49.453 3 0.0024394 13242 20211116_3434_TMUAki_TMT10x_P_F6 67.997 50.265 5056200 8518600 68957 9513600 4332800 4608300 4069300 7384000 8044300 7649000 7777400 4708400 7952400 473330 9561800 4152000 5059600 4264500 7375400 8000300 7459500 7510800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5056200 8518600 68957 9513600 4332800 4608300 4069300 7384000 8044300 7649000 7777400 4708400 7952400 473330 9561800 4152000 5059600 4264500 7375400 8000300 7459500 7510800 2 2 2 2 2 2 2 2 2 2 2 280900000 118640000 162260000 18970 641 17424 96773;96774;96775;96776;96777 117262;117263;117264;117265;117266 117263 5 TKTPGPGAQSALR Unmodified 1282.6993 0.69934831 1343 P62263 RPS14 40S ribosomal protein S14 yes yes 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 30.218 30.164 3 1.0285E-14 6062 20211116_3428_TMUAki_TMT10x_P_F1 168.93 104.51 1010300 1983800 6717.4 1216300 1661400 2175400 1416200 1491900 1678500 1258300 1543700 940770 1848300 97983 1309400 1587200 2141600 1457500 1544300 1691400 1238500 1493400 3 3 2 3 3 3 3 3 3 3 3 647750 1251000 6717.4 808320 1249800 1790000 1016900 960380 1055400 806210 984180 603170 1165600 68396 870560 1192900 1744400 1044900 1013700 1069500 793740 951610 2 2 2 2 2 2 2 2 2 2 2 362590 732890 0 408030 411580 385340 399320 531500 623140 452080 559550 337600 682650 29587 438860 394260 397250 412620 530640 621880 444800 541750 1 1 0 1 1 1 1 1 1 1 1 125470000 78794000 46672000 18971 1343 17425 96778;96779;96780 117267;117268;117269 117267 3 TKVEPYSLTAQQSSLIR Unmodified 1920.0316 0.031641065 2565 Q96T88;Q96T88-2 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 0 0 0 1 By MS/MS 1 0 1 1 50.106 49.845 3 2.2341E-15 16056 20211116_3439_TMUAki_TMT10x_S_F1 148.26 130.34 1075700 1810500 1476.4 1737800 832490 849940 705570 1229100 1312800 1159900 1439400 1001600 1689100 87151 1764700 795130 929150 741130 1228500 1313400 1135700 1384600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1075700 1810500 1476.4 1737800 832490 849940 705570 1229100 1312800 1159900 1439400 1001600 1689100 87151 1764700 795130 929150 741130 1228500 1313400 1135700 1384600 1 1 1 1 1 1 1 1 1 1 1 73695000 0 73695000 18972 2565 17426 96781 117270 117270 1 TKVGDGDLSAEEIPENEVSLRR Unmodified 2413.2085 0.20849581 1724 Q14684;Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 0 2 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 46.266 46.201 4 2.0861E-55 14409 20211116_3430_TMUAki_TMT10x_P_F3 226.99 203.12 7505100 12224000 24125 14237000 12291000 13514000 8959100 7941500 9944600 8327600 10081000 6987500 11414000 628540 14371000 11698000 13687000 9292300 8367200 10079000 8117300 9720500 5 5 2 5 5 5 5 5 5 5 5 5216100 8028900 478.11 9603500 10442000 12086000 7503100 5354200 6772700 5638500 6754600 4856100 7497700 428580 9723100 9933500 12008000 7741800 5792000 6921400 5495100 6516500 3 3 1 3 3 3 3 3 3 3 3 2289100 4195000 23647 4633900 1849100 1428600 1456000 2587400 3171900 2689100 3326300 2131500 3916000 199960 4648400 1764200 1679100 1550500 2575200 3157200 2622200 3204000 2 2 1 2 2 2 2 2 2 2 2 2617300000 1562000000 1055300000 18973 1724 17427 96782;96783;96784;96785;96786 117271;117272;117273;117274;117275 117272 5 TLAAEMQELR Oxidation (M) 1176.5809 0.58087266 2181 Q8N163;Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 1 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 36.558 36.469 2 0.016368 10162 20211116_3429_TMUAki_TMT10x_P_F2 64.927 22.832 2109700 3437000 21206 3587100 3996500 3475800 2741600 2025800 2374000 1947000 2980900 1964400 3207700 214470 3647100 3801300 3515200 2835100 2130500 2452800 1904700 2856800 4 4 2 4 4 4 4 4 4 4 4 1284700 1994400 21206 2187300 3009100 2705700 1677400 1269900 1481000 1140100 1831800 1196300 1861700 150420 2225500 2853000 2692100 1765000 1359700 1527700 1118800 1756200 2 2 2 2 2 2 2 2 2 2 2 824980 1442600 0 1399800 987440 770070 1064200 755940 893020 806900 1149200 768080 1345900 64041 1421600 948310 823020 1070200 770830 925080 785960 1100600 2 2 0 2 2 2 2 2 2 2 2 165010000 97419000 67590000 18974 2181 17428 96787;96788;96789;96790;96791 117276;117277;117278 117277 2620 3 TLAAEMQELR Unmodified 1160.586 0.58595803 2181 Q8N163;Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 52.148 52.226 2 1.1217E-08 15748 20211116_3442_TMUAki_TMT10x_S_F4 174.86 119.19 3384100 5644000 98607 6952200 3020200 2317300 2644900 3512800 2772500 3004600 4645700 3151600 5271300 367370 6930700 2892400 2673500 2706400 3496000 2881400 2955400 4423600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3384100 5644000 98607 6952200 3020200 2317300 2644900 3512800 2772500 3004600 4645700 3151600 5271300 367370 6930700 2892400 2673500 2706400 3496000 2881400 2955400 4423600 1 1 1 1 1 1 1 1 1 1 1 181130000 0 181130000 18975 2181 17428 96792;96793;96794;96795 117279;117280;117281;117282 117282 4 TLADLIR Unmodified 800.4756 0.47560295 1870 Q16878 CDO1 Cysteine dioxygenase type 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 51.327 51.444 2 0.0095333 14386 20211116_3445_TMUAki_TMT10x_S_F6 99.139 0 15515000 24965000 44428 26508000 20631000 19596000 15225000 19755000 18364000 17229000 21011000 14446000 23301000 1300200 26830000 19643000 20393000 15823000 20002000 18639000 16931000 20187000 4 4 1 4 4 4 4 4 4 4 4 4396700 6714800 0 7285000 9090900 9574600 5041700 5253500 5291600 4878000 5647800 4093700 6267800 416350 7425900 8614100 9515600 5333500 5548300 5385000 4779600 5437200 1 1 0 1 1 1 1 1 1 1 1 11118000 18250000 44428 19223000 11540000 10021000 10183000 14501000 13072000 12351000 15364000 10352000 17033000 883820 19404000 11029000 10877000 10490000 14453000 13254000 12152000 14750000 3 3 1 3 3 3 3 3 3 3 3 1024000000 536880000 487070000 18976 1870 17429 96796;96797;96798 117283;117284;117285;117286;117287 117287 5 TLAEIAK Unmodified 744.43815 0.43815481 1779;2323 Q15233;Q15233-2;Q8WXF1;Q8WXF1-2 NONO;PSPC1 Non-POU domain-containing octamer-binding protein;Paraspeckle component 1 no no 0 0 0 0 By MS/MS By MS/MS 4.71 1.03 1 2 2 2 4 3 44.712 44.833 2 0.0062899 12310 20211116_3431_TMUAki_TMT10x_P_F4 104.21 2.5657 41419000 66385000 60269 65813000 58259000 56513000 47540000 39730000 42651000 38206000 52274000 38565000 61942000 3646700 67042000 55591000 57768000 48631000 41196000 43945000 37377000 50129000 7 7 5 7 7 7 7 7 7 7 7 19173000 30503000 25871 29419000 35741000 37355000 22914000 18969000 20354000 17435000 23713000 17852000 28458000 1778500 30207000 33945000 37152000 23834000 20169000 20938000 17091000 22771000 3 3 2 3 3 3 3 3 3 3 3 22246000 35882000 34397 36394000 22518000 19158000 24626000 20760000 22296000 20771000 28561000 20713000 33484000 1868200 36834000 21645000 20616000 24797000 21027000 23007000 20286000 27358000 4 4 3 4 4 4 4 4 4 4 4 1598000000 980350000 617620000 18977 1779;2323 17430 96799;96800;96801;96802;96803;96804;96805 117288;117289;117290;117291;117292;117293 117288 6 TLAEIAKAELDGTILK Unmodified 1684.9611 0.96110188 2323 Q8WXF1;Q8WXF1-2 PSPC1 Paraspeckle component 1 yes no 0 0 0 1 By MS/MS By MS/MS 6.6 1.02 1 1 2 1 2 3 78.335 78.332 3 3.3746E-15 27170 20211116_3435_TMUAki_TMT10x_P_F7 137.45 112.52 13403000 22210000 153490 18974000 17409000 22749000 15716000 16205000 14444000 15083000 18502000 12480000 20712000 1310300 19641000 16660000 22796000 15990000 16773000 14894000 14777000 17723000 2 2 2 2 2 2 2 2 2 2 2 8072600 13162000 126010 11442000 8264900 17058000 10161000 10025000 8808500 9549900 11411000 7517400 12275000 789410 11878000 7980000 16873000 10165000 10534000 9112600 9346500 10928000 1 1 1 1 1 1 1 1 1 1 1 5330100 9048600 27482 7531500 9144600 5691800 5555400 6179800 5635200 5533100 7091100 4963100 8437600 520940 7763100 8679700 5922900 5825200 6239200 5781000 5430500 6795400 1 1 1 1 1 1 1 1 1 1 1 2959900000 581500000 2378400000 18978 2323 17431 96806;96807;96808;96809;96810 117294;117295;117296 117295 3 TLAEIAKVELDNMPLR Oxidation (M) 1827.9764 0.97643437 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 1 1 By MS/MS By MS/MS 5 1.41 2 2 2 2 2 5 5 68.209 68.266 3 0.00042025 24714 20211116_3441_TMUAki_TMT10x_S_F3 67.685 47.578 106210000 175520000 777190 163080000 135570000 193270000 121460000 169950000 149840000 154030000 150150000 98896000 163730000 8035700 167700000 129630000 194500000 124820000 173490000 151200000 151090000 144840000 14 14 6 14 14 14 14 14 14 14 14 55462000 86312000 43462 80607000 60633000 131950000 64078000 82709000 72797000 75155000 73311000 51640000 80517000 3510100 83403000 58220000 130150000 65087000 86352000 73696000 73712000 70704000 8 8 1 8 8 8 8 8 8 8 8 50753000 89208000 733720 82475000 74938000 61317000 57381000 87243000 77041000 78872000 76842000 47256000 83215000 4525600 84297000 71411000 64353000 59730000 87143000 77509000 77375000 74133000 6 6 5 6 6 6 6 6 6 6 6 18139000000 10373000000 7766200000 18979 1779 17432 96811;96812;96813;96814;96815;96816;96817;96818;96819;96820 117297;117298;117299;117300;117301;117302;117303;117304;117305;117306;117307;117308;117309;117310;117311 117305 2396 15 TLAEIAKVELDNMPLR Unmodified 1811.9815 0.98151975 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 1 By MS/MS By MS/MS 6.5 1.12 2 2 2 2 4 4 77.72 77.727 3 2.8035E-29 26887 20211116_3435_TMUAki_TMT10x_P_F7 193.41 158.5 86918000 137950000 175550 147870000 108470000 82993000 99261000 37474000 28628000 44944000 86295000 80916000 128760000 5844300 149180000 103660000 87526000 98979000 40621000 34261000 43587000 81460000 7 7 3 7 7 7 7 7 7 7 7 36125000 56408000 175550 58585000 35297000 47836000 43247000 17857000 14148000 20520000 36357000 33637000 52643000 3050600 59452000 34048000 48721000 42551000 19748000 16455000 19931000 34384000 4 4 3 4 4 4 4 4 4 4 4 50793000 81543000 0 89285000 73169000 35157000 56014000 19617000 14480000 24424000 49939000 47279000 76117000 2793700 89729000 69614000 38805000 56428000 20873000 17806000 23655000 47076000 3 3 0 3 3 3 3 3 3 3 3 11017000000 4926400000 6090400000 18980 1779 17432 96821;96822;96823;96824;96825;96826;96827;96828 117312;117313;117314;117315;117316;117317;117318 117314 7 TLAEINANRADAEEEAATR Unmodified 2043.9821 0.98212469 1629 Q13409;Q13409-3;Q13409-2;Q13409-6;Q13409-7;Q13409-5 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 yes no 0 0 0 1 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 40.366 40.238 3 2.5143E-80 10089 20211116_3428_TMUAki_TMT10x_P_F1 312.02 284.15 3188500 5331900 16801 6751800 6430200 6941200 4093400 5130900 5667200 4670100 5183200 2968700 4980500 306140 6790500 6106600 7018900 4323000 5294300 5679400 4580000 5015000 6 6 3 6 6 6 6 6 6 6 6 1959900 3236500 14126 4026400 5628200 5988400 3356000 3083300 3498200 2873700 3102100 1824900 3023000 216110 4081200 5339600 5914200 3527300 3275200 3538500 2815200 3004800 3 3 2 3 3 3 3 3 3 3 3 1228600 2095400 2674.4 2725300 801950 952840 737400 2047500 2169100 1796400 2081100 1143900 1957600 90036 2709300 766950 1104600 795670 2019000 2140900 1764800 2010300 3 3 1 3 3 3 3 3 3 3 3 1020900000 703700000 317160000 18981 1629 17433 96829;96830;96831;96832;96833 117319;117320;117321;117322;117323;117324 117319 6 TLAEINANRADAEEEAATRIPA Unmodified 2325.1561 0.15606631 1629 Q13409;Q13409-3;Q13409-2;Q13409-6;Q13409-7;Q13409-5 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 yes no 0 0 0 2 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 52.694 52.575 3 3.6969E-76 15376 20211116_3440_TMUAki_TMT10x_S_F2 270.74 250.09 22602000 38548000 157440 39351000 31976000 37122000 25425000 32353000 31462000 29005000 31788000 21044000 35972000 1932400 40055000 30491000 37848000 26319000 33035000 31754000 28466000 30655000 9 9 4 9 9 9 9 9 9 9 9 10572000 17837000 76697 17958000 16929000 25915000 14994000 15414000 15247000 13702000 14765000 9843200 16645000 971900 18430000 16184000 25674000 15318000 16150000 15483000 13453000 14258000 4 4 2 4 4 4 4 4 4 4 4 12030000 20711000 80747 21394000 15047000 11207000 10431000 16939000 16214000 15303000 17023000 11201000 19328000 960540 21625000 14307000 12174000 11001000 16884000 16271000 15013000 16397000 5 5 2 5 5 5 5 5 5 5 5 5576700000 2702600000 2874100000 18982 1629 17434 96834;96835;96836;96837;96838;96839 117325;117326;117327;117328;117329;117330;117331;117332;117333 117330 9 TLAESALQLLYTAK Unmodified 1520.845 0.84500949 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.73 1.81 2 4 4 1 7 4 80.256 80.227 2;3 1.3598E-43 26569 20211116_3440_TMUAki_TMT10x_S_F2 273.15 243.35 51376000 83766000 332350 77192000 60930000 76088000 65562000 49163000 47814000 51719000 63243000 47838000 78138000 4645900 79196000 58555000 76976000 65710000 51421000 49966000 50406000 60531000 11 11 9 11 11 11 11 11 11 11 11 28156000 44701000 140610 40786000 27341000 47257000 31679000 26108000 25605000 26922000 32581000 26217000 41697000 2397000 41981000 26330000 47268000 31718000 27636000 26562000 26260000 31214000 6 6 4 6 6 6 6 6 6 6 6 23220000 39064000 191740 36406000 33589000 28830000 33883000 23055000 22208000 24797000 30662000 21621000 36441000 2249000 37215000 32226000 29708000 33992000 23784000 23404000 24146000 29317000 5 5 5 5 5 5 5 5 5 5 5 11267000000 5974300000 5292700000 18983 3293 17435 96840;96841;96842;96843;96844;96845;96846;96847;96848;96849;96850 117334;117335;117336;117337;117338;117339;117340;117341;117342;117343;117344;117345 117343 12 TLAFTSVDLTNK Unmodified 1308.6925 0.6925316 2896 Q9NPJ3;Q9NPJ3-2 ACOT13 Acyl-coenzyme A thioesterase 13;Acyl-coenzyme A thioesterase 13, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 65.161 65.22 2;3 2.6483E-15 20288 20211116_3436_TMUAki_TMT10x_P_F8 164.65 132.33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18984 2896 17436 96851;96852 117346;117347 117346 2 TLAGDVHIVR Unmodified 1079.6087 0.60874239 3083 Q9UBQ0;Q9UBQ0-2 VPS29 Vacuolar protein sorting-associated protein 29 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 1.33 1 2 1 3 2 4 5 36.39 36.33 2;3 2.8386E-11 7916 20211116_3444_TMUAki_TMT10x_S_F5 204.28 143.63 4476100 6940600 8389.8 6978300 7781700 7277300 4887800 4706200 4561000 4686900 5785000 4167700 6476500 416260 7120800 7388700 7337400 5099100 4914100 4697800 4578200 5542600 5 5 2 5 5 5 5 5 5 5 5 3315300 4976200 854.73 5063800 6376400 6169900 3522900 3518900 3358300 3501000 4212800 3086800 4643600 312890 5176300 6042000 6157700 3717500 3711100 3454100 3420000 4037500 3 3 1 3 3 3 3 3 3 3 3 1160800 1964500 7535 1914500 1405300 1107400 1364900 1187200 1202700 1185900 1572200 1080800 1832900 103370 1944600 1346700 1179700 1381600 1203000 1243700 1158200 1505200 2 2 1 2 2 2 2 2 2 2 2 1602200000 1221000000 381200000 18985 3083 17437 96853;96854;96855;96856;96857;96858;96859;96860;96861 117348;117349;117350;117351;117352;117353;117354;117355 117355 8 TLAKPNIR Unmodified 911.55525 0.55525025 1237 P55084;P55084-2 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 34.15 34.039 3 0.054048 9107 20211116_3429_TMUAki_TMT10x_P_F2 47.869 27.302 934350 1485900 0 1407500 1499400 1640900 1133500 1012600 1071800 940000 1258500 869920 1386200 78911 1444900 1428100 1643200 1167000 1059000 1099700 921040 1208300 1 1 0 1 1 1 1 1 1 1 1 934350 1485900 0 1407500 1499400 1640900 1133500 1012600 1071800 940000 1258500 869920 1386200 78911 1444900 1428100 1643200 1167000 1059000 1099700 921040 1208300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42818000 42818000 0 18986 1237 17438 96862;96863 117356 117356 1 TLAMDTILANAR Oxidation (M) 1304.6758 0.67583567 1058 P46926;P46926-2 GNPDA1 Glucosamine-6-phosphate isomerase 1 yes no 0 0 1 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 49.238 49.383 2 8.7523E-06 13214 20211116_3434_TMUAki_TMT10x_P_F6 115.13 91.276 6828600 11339000 36738 11598000 10972000 15143000 8464800 11998000 11938000 9772300 10363000 6358100 10581000 624210 11867000 10457000 15137000 8824800 12291000 11937000 9635800 10045000 4 4 1 4 4 4 4 4 4 4 4 5400700 8976700 36738 9196000 9726500 13615000 7304100 9249000 8942100 7569800 8193500 5028600 8377000 510630 9432000 9265400 13499000 7586200 9573800 8998800 7462300 7927200 3 3 1 3 3 3 3 3 3 3 3 1427900 2362300 0 2402000 1245200 1527900 1160700 2749400 2995900 2202400 2169300 1329500 2204400 113580 2434600 1191700 1637900 1238600 2717400 2938200 2173500 2118300 1 1 0 1 1 1 1 1 1 1 1 960570000 597040000 363540000 18987 1058 17439 96864;96865;96866 117357;117358 117358 1380 2 TLAMDTILANAR Unmodified 1288.6809 0.68092105 1058 P46926;P46926-2 GNPDA1 Glucosamine-6-phosphate isomerase 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 63.906 64.087 2 2.6211E-30 19843 20211116_3436_TMUAki_TMT10x_P_F8 261.03 214.58 5849600 8978300 118510 10090000 6942700 8329300 7204700 3857200 2666300 3974100 6584900 5447400 8381800 610730 10188000 6670700 8493400 7153800 4150900 3050100 3876500 6230900 1 1 1 1 1 1 1 1 1 1 1 5849600 8978300 118510 10090000 6942700 8329300 7204700 3857200 2666300 3974100 6584900 5447400 8381800 610730 10188000 6670700 8493400 7153800 4150900 3050100 3876500 6230900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 687850000 687850000 0 18988 1058 17439 96867;96868;96869 117359;117360;117361 117359 3 TLAPTWEELSKK Unmodified 1401.7504 0.75038083 2227 Q8NBS9;Q8NBS9-2 TXNDC5 Thioredoxin domain-containing protein 5 yes no 0 0 0 1 By MS/MS By matching 7 0 2 1 1 56.561 57.19 3 0.00021245 18190 20211116_3435_TMUAki_TMT10x_P_F7 89.613 65.782 19469000 27900000 0 26045000 54106000 51394000 19871000 21279000 13578000 17857000 24446000 18124000 26027000 1653100 26328000 50967000 50117000 20925000 23052000 14435000 17581000 23246000 2 2 0 1 2 2 1 2 2 2 2 19469000 27900000 0 26045000 54106000 51394000 19871000 21279000 13578000 17857000 24446000 18124000 26027000 1653100 26328000 50967000 50117000 20925000 23052000 14435000 17581000 23246000 2 2 0 1 2 2 1 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1054500000 573050000 481500000 18989 2227 17440 96870;96871 117362;117363 117362 2 TLAQLNPESSLFIIASK Unmodified 1831.0091 0.0091147084 522 P06744;P06744-2 GPI Glucose-6-phosphate isomerase yes no 0 0 0 0 By MS/MS By MS/MS 2.89 1.94 6 18 15 5 18 26 57.83 57.77 2;3 2.8693E-47 27449 20211116_3429_TMUAki_TMT10x_P_F2 252.02 233.28 118220000 187160000 506070 190710000 128570000 142650000 130260000 93232000 83301000 95621000 126870000 110070000 174660000 9244200 193580000 123280000 147170000 130580000 97358000 88345000 93290000 121040000 30 30 13 30 30 30 30 30 30 30 30 59048000 91491000 286270 92919000 50556000 88627000 61744000 45880000 40271000 46669000 64352000 54977000 85376000 4520500 94628000 48741000 89592000 61380000 48829000 42763000 45547000 61333000 13 13 5 13 13 13 13 13 13 13 13 59175000 95671000 219800 97786000 78013000 54019000 68513000 47352000 43031000 48951000 62515000 55094000 89279000 4723700 98954000 74535000 57581000 69204000 48529000 45583000 47743000 59703000 17 17 8 17 17 17 17 17 17 17 17 36047000000 20601000000 15446000000 18990 522 17441 96872;96873;96874;96875;96876;96877;96878;96879;96880;96881;96882;96883;96884;96885;96886;96887;96888;96889;96890;96891;96892;96893;96894;96895;96896;96897;96898;96899;96900;96901;96902;96903;96904;96905;96906;96907;96908;96909;96910;96911;96912;96913;96914;96915 117364;117365;117366;117367;117368;117369;117370;117371;117372;117373;117374;117375;117376;117377;117378;117379;117380;117381;117382;117383;117384;117385;117386;117387;117388;117389;117390;117391;117392;117393;117394;117395;117396;117397;117398;117399;117400;117401;117402;117403;117404;117405;117406;117407;117408;117409;117410;117411;117412;117413 117371 50 TLASAGGPDNLVLLNPEK Unmodified 1807.968 0.96797818 938 P35611;P35611-2;P35611-4;P35611-6;P35611-3;P35611-5 ADD1 Alpha-adducin yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 68.963 68.952 3 1.113E-18 21618 20211116_3445_TMUAki_TMT10x_S_F6 159.69 138.46 10102000 17983000 41104 16669000 12097000 16410000 11556000 12659000 11371000 11946000 12644000 9406200 16775000 893860 17094000 11587000 16649000 11744000 13039000 11621000 11697000 12158000 4 4 3 4 4 4 4 4 4 4 4 4693300 8612000 38102 7656400 5451600 10513000 5763000 5868700 5541100 5503100 5735300 4370200 8032400 435240 7921000 5237400 10430000 5822500 6190300 5653800 5389700 5526600 2 2 2 2 2 2 2 2 2 2 2 5408700 9370800 3001.9 9013100 6645200 5897000 5792600 6790600 5829400 6443300 6909000 5036000 8742600 458620 9173500 6349800 6219700 5921400 6848700 5967100 6307200 6631400 2 2 1 2 2 2 2 2 2 2 2 1470600000 851440000 619130000 18991 938 17442 96916;96917;96918;96919 117414;117415;117416;117417;117418 117417 5 TLATDILMGVLK Unmodified 1273.7316 0.73155964 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 80.738 80.729 2 1.4531E-08 26741 20211116_3440_TMUAki_TMT10x_S_F2 141.88 94.577 17967000 27449000 52492 27332000 19491000 19152000 20059000 10102000 8902500 11398000 18377000 16729000 25613000 1447800 27769000 18699000 19812000 19971000 10766000 9881100 11078000 17434000 3 3 1 3 3 3 3 3 3 3 3 8930100 12896000 52492 13129000 7595500 12809000 9475600 6004400 5672700 6458700 9457100 8314700 12034000 701450 13372000 7328800 12916000 9395500 6461900 6071700 6289200 9005800 2 2 1 2 2 2 2 2 2 2 2 9037300 14553000 0 14204000 11895000 6342800 10583000 4097100 3229800 4938800 8919500 8414300 13579000 746370 14397000 11370000 6896000 10576000 4304200 3809500 4788800 8428200 1 1 0 1 1 1 1 1 1 1 1 2378100000 1509000000 869120000 18992 196 17443 96920;96921;96922 117419;117420;117421 117421 3 TLATDILMGVLK Oxidation (M) 1289.7265 0.72647426 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 1 0 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 79.351 79.313 2 2.705E-07 26133 20211116_3436_TMUAki_TMT10x_P_F8 110.88 82.674 3596100 5651500 0 5058300 5062200 4550000 4359800 4896700 4518000 4727900 4673000 3348100 5271300 290530 5194600 4834400 4674400 4463900 4956100 4594900 4624500 4503100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3596100 5651500 0 5058300 5062200 4550000 4359800 4896700 4518000 4727900 4673000 3348100 5271300 290530 5194600 4834400 4674400 4463900 4956100 4594900 4624500 4503100 1 1 0 1 1 1 1 1 1 1 1 515000000 0 515000000 18993 196 17443 96923;96924;96925 117422;117423;117424 117423 151 3 TLATWATK Unmodified 890.48617 0.48616764 1739 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 51.563 51.479 2 0.0019319 14633 20211116_3428_TMUAki_TMT10x_P_F1 105.78 72.269 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18994 1739 17444 96926;96927 117425;117426 117425 2 TLAVSGLGVVGR Unmodified 1127.6663 0.66625727 625 P11388;P11388-2;P11388-3;P11388-4 TOP2A DNA topoisomerase 2-alpha yes no 0 0 0 0 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 54.795 54.677 2 7.6865E-17 16181 20211116_3440_TMUAki_TMT10x_S_F2 213.63 150.41 26485000 44188000 245400 43475000 33592000 42035000 28510000 35343000 36202000 35883000 36399000 24661000 41229000 2485400 44380000 32094000 42760000 29423000 36288000 36500000 35023000 35106000 6 6 4 6 6 6 6 6 6 6 6 14783000 24090000 97046 22957000 21889000 31583000 18882000 18677000 19421000 19211000 19817000 13765000 22474000 1402100 23629000 20918000 31352000 19327000 19657000 19748000 18740000 19105000 3 3 2 3 3 3 3 3 3 3 3 11702000 20098000 148360 20518000 11702000 10452000 9627500 16666000 16780000 16672000 16581000 10897000 18755000 1083300 20751000 11176000 11408000 10096000 16632000 16751000 16283000 16002000 3 3 2 3 3 3 3 3 3 3 3 3560200000 2106800000 1453400000 18995 625 17445 96928;96929;96930;96931;96932;96933 117427;117428;117429;117430;117431;117432 117431 6 TLAYLLPAIVHINHQPYLER Unmodified 2360.3005 0.30048612 2368 Q92841;Q92841-3;Q92841-1;Q92841-2 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 0 0 By MS/MS By MS/MS 4.11 0.737 2 4 3 5 4 74.667 74.622 3;4 2.3437E-16 24666 20211116_3433_TMUAki_TMT10x_P_F5 138.07 121.39 35024000 59959000 814240 57566000 40574000 60581000 45669000 41617000 39975000 41644000 47160000 32615000 55940000 3468500 58941000 39073000 61104000 45881000 43271000 41171000 40671000 45271000 13 13 8 13 13 13 13 13 13 13 13 20891000 35927000 457530 33603000 22240000 43378000 27225000 25295000 24320000 25215000 27326000 19454000 33515000 2067000 34591000 21471000 43181000 27265000 26629000 24975000 24629000 26267000 7 7 4 7 7 7 7 7 7 7 7 14133000 24032000 356700 23963000 18334000 17203000 18443000 16321000 15655000 16430000 19834000 13161000 22424000 1401500 24350000 17602000 17923000 18616000 16642000 16196000 16042000 19004000 6 6 4 6 6 6 6 6 6 6 6 12746000000 5974500000 6771300000 18996 2368 17446 96934;96935;96936;96937;96938;96939;96940;96941;96942 117433;117434;117435;117436;117437;117438;117439;117440;117441;117442;117443;117444;117445;117446;117447 117440 15 TLDGIFSEQVAMGYSHSLVIAR Oxidation (M) 2409.1998 0.19984538 3056 Q9P258 RCC2 Protein RCC2 yes yes 0 0 1 0 By MS/MS By MS/MS 5.4 2.8 2 1 2 2 3 72.691 72.767 3 1.0297E-11 22841 20211116_3447_TMUAki_TMT10x_S_F8 120.75 108.03 11928000 20831000 91557 19372000 13324000 25127000 16658000 16451000 18057000 18970000 16551000 11106000 19432000 979500 19952000 12857000 25048000 16766000 17239000 18255000 18423000 16013000 7 7 3 7 7 7 7 7 7 7 7 9091900 15605000 84134 14697000 9741300 20878000 12147000 12556000 13325000 14645000 12379000 8465700 14557000 792990 15150000 9402800 20701000 12232000 13249000 13471000 14217000 11971000 5 5 2 5 5 5 5 5 5 5 5 2836300 5226000 7423.3 4675600 3582300 4249100 4510500 3894500 4731800 4325500 4172100 2640400 4874400 186510 4802400 3454400 4347000 4533500 3990400 4784300 4206700 4042000 2 2 1 2 2 2 2 2 2 2 2 2847500000 1919600000 927980000 18997 3056 17447 96943;96944;96945;96946;96947 117448;117449;117450;117451;117452;117453;117454;117455;117456 117455 3104 9 TLDLPIYVTR Unmodified 1189.6707 0.67067394 1207 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 By MS/MS By MS/MS 6.4 0.49 3 2 2 3 65.782 66.018 2 3.9126E-09 21825 20211116_3435_TMUAki_TMT10x_P_F7 178.94 137.51 22391000 37438000 244660 36277000 27164000 37285000 26828000 28646000 27486000 29173000 30197000 20850000 34929000 2149200 37105000 26053000 37728000 27251000 29577000 28030000 28471000 29046000 5 5 4 5 5 5 5 5 5 5 5 12966000 21960000 153340 21178000 15428000 27270000 16623000 16892000 16062000 17339000 17607000 12073000 20488000 1250300 21751000 14832000 27172000 16781000 17712000 16420000 16916000 16937000 3 3 2 3 3 3 3 3 3 3 3 9425300 15478000 91317 15099000 11736000 10015000 10206000 11754000 11424000 11834000 12591000 8776600 14441000 898890 15354000 11220000 10555000 10470000 11865000 11610000 11555000 12110000 2 2 2 2 2 2 2 2 2 2 2 2310000000 1455700000 854290000 18998 1207 17448 96948;96949;96950;96951;96952 117457;117458;117459;117460;117461;117462 117458 6 TLDLSNNQLSEIPAELADCPK Unmodified 2327.1315 0.13149104 2188 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 1 3 77.675 77.69 3 7.5921E-05 24897 20211116_3444_TMUAki_TMT10x_S_F5 65.25 49.658 6939200 10172000 313300 9872600 7970300 8404300 8146200 3970200 3735700 4617800 6974800 6463400 9490400 881740 10071000 7665700 8552600 8117300 4279800 4108400 4483300 6628000 2 2 2 2 2 2 2 2 2 2 2 3616400 4371700 193410 4807800 3434700 5021100 4040700 1744400 1730800 2136500 3136000 3368700 4080900 477540 4877100 3320300 5028300 3995500 1950700 1911700 2070400 2981700 1 1 1 1 1 1 1 1 1 1 1 3322800 5800200 119890 5064800 4535600 3383200 4105500 2225800 2004900 2481300 3838700 3094700 5409500 404200 5193800 4345400 3524300 4121800 2329100 2196700 2412800 3646300 1 1 1 1 1 1 1 1 1 1 1 1054800000 602360000 452420000 18999 2188 17449 96953;96954;96955;96956 117463;117464;117465;117466 117465 4 TLDPDPAIR Unmodified 996.52401 0.52400971 1234 P55060;P55060-3;P55060-4;P55060-2 CSE1L Exportin-2 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 2 2 2 1 2 1 1 3 6 39.204 39.215 2 0.00038163 9969 20211116_3440_TMUAki_TMT10x_S_F2 125.49 78.426 5108400 8377200 50048 9145900 9161800 8204600 5776000 6085700 6179100 5212200 7276200 4756700 7819700 513800 9262000 8701800 8368800 6048400 6268300 6307500 5126500 6985100 6 6 5 6 6 6 6 6 6 6 6 3062300 4970400 17694 5403700 7139800 6406300 3817600 3557700 3670900 2904900 4225900 2851300 4639500 314360 5497100 6762700 6400400 4041600 3741400 3760600 2864000 4059400 3 3 2 3 3 3 3 3 3 3 3 2046000 3406900 32354 3742200 2022000 1798400 1958400 2528000 2508200 2307300 3050300 1905300 3180200 199450 3764900 1939200 1968300 2006800 2526900 2546900 2262500 2925700 3 3 3 3 3 3 3 3 3 3 3 588340000 435080000 153260000 19000 1234 17450 96957;96958;96959;96960;96961;96962;96963;96964;96965 117467;117468;117469;117470;117471;117472;117473;117474;117475 117472 9 TLDQISDADNIPGLLVLK Unmodified 1924.0517 0.051707805 2008 Q6PGP7 TTC37 Tetratricopeptide repeat protein 37 yes yes 0 0 0 0 By MS/MS 6 0 1 1 79.603 79.595 3 0.00018092 25936 20211116_3445_TMUAki_TMT10x_S_F6 67.645 48.813 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19001 2008 17451 96966 117476 117476 1 TLDSWRDEFLIQASPR Unmodified 1932.9694 0.96937516 1151 P51149 RAB7A Ras-related protein Rab-7a yes yes 0 0 0 1 By matching By MS/MS 7 0 2 1 1 68.534 68.933 3 0.00072024 23591 20211116_3446_TMUAki_TMT10x_S_F7 68.243 56.45 27890000 43755000 0 35133000 24764000 23589000 26134000 25682000 20354000 21337000 29374000 25966000 40796000 2061200 36278000 23765000 24790000 26258000 25876000 21279000 21018000 28057000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27890000 43755000 0 35133000 24764000 23589000 26134000 25682000 20354000 21337000 29374000 25966000 40796000 2061200 36278000 23765000 24790000 26258000 25876000 21279000 21018000 28057000 1 1 0 1 1 1 1 1 1 1 1 2640400000 1421800000 1218600000 19002 1151 17452 96967;96968 117477 117477 1 TLEDPDLNVR Unmodified 1170.5881 0.58806652 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 44.977 44.826 2 8.0515E-14 13525 20211116_3429_TMUAki_TMT10x_P_F2 219.19 192.75 4325800 6552500 23361 9298400 9205400 7615200 4839400 6422600 7310500 5263900 7318600 4027500 6124400 394400 9266700 8714700 7834900 5213600 6555500 7329300 5188800 7059700 4 4 2 4 4 4 4 4 4 4 4 2308800 3340600 8688.2 4686400 7661300 6177800 3356200 3385800 3803600 2721500 3776200 2149400 3122100 231520 4708100 7235500 6138800 3643300 3563500 3849000 2685400 3643600 2 2 1 2 2 2 2 2 2 2 2 2017000 3211900 14673 4612000 1544100 1437400 1483200 3036700 3506900 2542400 3542300 1878100 3002300 162880 4558600 1479100 1696000 1570300 2992000 3480400 2503400 3416100 2 2 1 2 2 2 2 2 2 2 2 362270000 205230000 157040000 19003 2116 17453 96969;96970;96971;96972 117478;117479;117480;117481 117478 4 TLEDPDLNVRR Unmodified 1326.6892 0.68917755 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 2.8 1.17 1 1 1 2 4 1 36.394 36.234 3 2.2747E-16 11440 20211116_3441_TMUAki_TMT10x_S_F3 213.16 151.72 2881100 4298900 99670 6351400 5308300 3818900 3149700 4561900 4764400 3407700 4964400 2683300 4019000 365750 6296700 5041600 4063400 3357700 4566200 4783400 3375700 4782800 3 3 3 3 3 3 3 3 3 3 3 912310 1168800 32426 1711500 3366900 2205900 1205000 1360000 1434800 1015700 1580600 849700 1092600 140230 1715100 3175900 2197800 1342400 1415200 1454800 1006200 1520200 1 1 1 1 1 1 1 1 1 1 1 1968800 3130100 67245 4639900 1941400 1613000 1944700 3201900 3329500 2392000 3383800 1833600 2926300 225510 4581600 1865700 1865600 2015200 3151100 3328600 2369500 3262600 2 2 2 2 2 2 2 2 2 2 2 673670000 397900000 275770000 19004 2116 17454 96973;96974;96975;96976;96977 117482;117483;117484;117485;117486 117485 5 TLEDRFFEHEVK Unmodified 1548.7573 0.75725712 1312 P61421 ATP6V0D1 V-type proton ATPase subunit d 1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 47.529 47.69 4 8.0937E-12 13421 20211116_3431_TMUAki_TMT10x_P_F4 166.38 125.29 3067800 5158900 13256 6076000 4665100 4456400 3249500 3690400 3626400 3164600 4293600 2856500 4817300 289070 6109500 4438300 4622500 3381800 3775000 3696400 3112400 4121200 2 2 2 2 2 2 2 2 2 2 2 1293400 2174300 7801.1 2613100 2502000 2858100 1642200 1598600 1517900 1255300 1744500 1204400 2030500 131430 2638500 2377900 2868200 1706900 1678700 1557700 1240200 1675900 1 1 1 1 1 1 1 1 1 1 1 1774300 2984600 5454.8 3462900 2163100 1598300 1607300 2091700 2108500 1909300 2549100 1652100 2786800 157630 3471100 2060500 1754300 1674900 2096400 2138700 1872300 2445400 1 1 1 1 1 1 1 1 1 1 1 771060000 330150000 440920000 19005 1312 17455 96978;96979;96980 117487;117488 117487 2 TLEEDEEELFK Unmodified 1380.6297 0.62965657 1030 P43487;P43487-2 RANBP1 Ran-specific GTPase-activating protein yes no 0 0 0 0 By MS/MS By MS/MS 2.45 0.741 6 19 26 2 44 9 58.904 58.814 2;3 1.6912E-72 23537 20211116_3439_TMUAki_TMT10x_S_F1 339.04 301.49 128910000 211350000 784720 207330000 143150000 202930000 120550000 121020000 108610000 132500000 141380000 120030000 197200000 9949200 210540000 136680000 205160000 121960000 126330000 112170000 128930000 135370000 46 46 20 45 46 46 45 45 45 45 46 60681000 94276000 105050 86498000 78827000 140270000 53499000 50304000 44429000 57064000 64888000 56496000 87940000 4023700 88402000 74917000 137560000 54182000 54693000 46318000 55453000 61962000 38 38 15 37 38 38 37 37 37 37 38 68230000 117070000 679680 120830000 64323000 62662000 67047000 70715000 64180000 75432000 76487000 63532000 109260000 5925500 122130000 61766000 67605000 67778000 71633000 65854000 73477000 73403000 8 8 5 8 8 8 8 8 8 8 8 78707000000 43792000000 34915000000 19006 1030 17456 96981;96982;96983;96984;96985;96986;96987;96988;96989;96990;96991;96992;96993;96994;96995;96996;96997;96998;96999;97000;97001;97002;97003;97004;97005;97006;97007;97008;97009;97010;97011;97012;97013;97014;97015;97016;97017;97018;97019;97020;97021;97022;97023;97024;97025;97026;97027;97028;97029;97030;97031;97032;97033 117489;117490;117491;117492;117493;117494;117495;117496;117497;117498;117499;117500;117501;117502;117503;117504;117505;117506;117507;117508;117509;117510;117511;117512;117513;117514;117515;117516;117517;117518;117519;117520;117521;117522;117523;117524;117525;117526;117527;117528;117529;117530;117531;117532;117533;117534;117535;117536;117537;117538;117539;117540;117541;117542;117543;117544;117545;117546;117547;117548 117539 60 TLEEEAKTHEAQIQEMR Oxidation (M) 2057.9688 0.96878281 934 P35579 MYH9 Myosin-9 yes yes 0 0 1 1 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 38.304 38.131 4 2.7606E-08 10738 20211116_3429_TMUAki_TMT10x_P_F2 119.08 100.24 1123800 1805100 13959 1906600 2468700 2627000 1581200 2617300 2405800 1760400 2020300 1046500 1684800 125020 1948700 2345600 2631600 1675800 2635900 2397700 1754600 1960900 3 3 3 3 3 3 3 3 3 3 3 644180 1021800 10552 1091800 1998300 2202500 1114900 1752700 1540500 1161300 1208800 599880 953690 82207 1125400 1894500 2165200 1190300 1787000 1536800 1158600 1176400 2 2 2 2 2 2 2 2 2 2 2 479670 783370 3407.4 814870 470360 424500 466270 864610 865280 599080 811500 446640 731090 42813 823240 451110 466420 485520 848920 860900 596040 784490 1 1 1 1 1 1 1 1 1 1 1 272500000 234560000 37934000 19007 934 17457 97034;97035;97036 117549;117550;117551 117550 1184 3 TLEEEDQSIVRPLETENHK Unmodified 2266.1077 0.10771913 1080 P48681 NES Nestin yes yes 0 0 0 1 By MS/MS By MS/MS 2.2 0.748 1 2 2 2 3 46.995 46.811 4 2.9207E-64 15804 20211116_3441_TMUAki_TMT10x_S_F3 274.82 242.13 10807000 18388000 229160 22387000 17817000 19020000 13112000 11090000 11716000 10582000 13710000 10064000 17173000 1152600 22506000 16976000 19406000 13503000 11660000 12051000 10356000 13164000 7 7 4 7 7 7 7 7 7 7 7 7815000 13070000 152340 15957000 15642000 17028000 11221000 8125400 8484800 7678200 9807000 7277200 12206000 844360 16091000 14893000 17081000 11528000 8697300 8798500 7517300 9419500 5 5 2 5 5 5 5 5 5 5 5 2992500 5317800 76822 6429700 2175500 1991700 1891100 2964300 3231400 2903500 3902800 2786900 4966200 308250 6414500 2083400 2324700 1974600 2963000 3252500 2838200 3744100 2 2 2 2 2 2 2 2 2 2 2 1035900000 624380000 411480000 19008 1080 17458 97037;97038;97039;97040;97041 117552;117553;117554;117555;117556;117557;117558 117558 7 TLEEEFAR Unmodified 993.47673 0.47672516 2789 Q9H2G2;Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 43.354 43.372 2 0.019226 13010 20211116_3429_TMUAki_TMT10x_P_F2 68.224 46.092 687590 1089800 11314 1338100 605100 619670 641140 1190400 1164900 937890 1074300 640300 1017800 66395 1336800 581790 688420 664670 1174000 1158900 926400 1039200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 687590 1089800 11314 1338100 605100 619670 641140 1190400 1164900 937890 1074300 640300 1017800 66395 1336800 581790 688420 664670 1174000 1158900 926400 1039200 1 1 1 1 1 1 1 1 1 1 1 17104000 0 17104000 19009 2789 17459 97042;97043 117559;117560 117559 2 TLEEGHDFIQEFPGSPAFAALTSIAQK Unmodified 2903.4341 0.43413865 3331 Q9Y5Y2 NUBP2 Cytosolic Fe-S cluster assembly factor NUBP2 yes yes 0 0 0 0 By MS/MS 6 0 1 1 79.517 79.509 4 6.0235E-05 25870 20211116_3445_TMUAki_TMT10x_S_F6 63.115 50.801 2202300 3696800 0 3518200 2996600 2600400 3043800 2129400 2051400 2533400 3069800 2049800 3448800 95739 3588100 2868100 2695200 3054300 2200900 2166500 2457600 2929800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2202300 3696800 0 3518200 2996600 2600400 3043800 2129400 2051400 2533400 3069800 2049800 3448800 95739 3588100 2868100 2695200 3054300 2200900 2166500 2457600 2929800 1 1 0 1 1 1 1 1 1 1 1 942890000 0 942890000 19010 3331 17460 97044 117561 117561 1 TLEEILLER Unmodified 1114.6234 0.6233894 311 O75152 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes yes 0 0 0 0 By MS/MS 2 0 1 1 70.909 70.626 2 0.001575 24005 20211116_3429_TMUAki_TMT10x_P_F2 96.331 51.019 2952600 4751200 0 4521900 3285800 5821300 3595000 3322800 3226500 3378400 3731900 2748900 4432500 216300 4648700 3156200 5794000 3619000 3506200 3316500 3297200 3584400 1 1 0 1 1 1 1 1 1 1 1 2952600 4751200 0 4521900 3285800 5821300 3595000 3322800 3226500 3378400 3731900 2748900 4432500 216300 4648700 3156200 5794000 3619000 3506200 3316500 3297200 3584400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 185730000 185730000 0 19011 311 17461 97045 117562 117562 1 TLEGQLVQHPGPGIPRPGHR Unmodified 2145.1556 0.15555322 2348 Q92614;Q92614-4;Q92614-3 MYO18A Unconventional myosin-XVIIIa yes no 0 0 0 1 By MS/MS 1 0 1 1 35.391 35.391 5 0.0059712 8211 20211116_3428_TMUAki_TMT10x_P_F1 55.688 38.749 414030 692450 8119.9 803950 1041400 1040400 533280 841660 873420 691400 717240 385570 646550 50681 815820 986290 1040800 578030 861270 868130 681450 696730 1 1 1 1 1 1 1 1 1 1 1 414030 692450 8119.9 803950 1041400 1040400 533280 841660 873420 691400 717240 385570 646550 50681 815820 986290 1040800 578030 861270 868130 681450 696730 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 44306000 44306000 0 19012 2348 17462 97046 117563 117563 1 TLEHLQLSHDQLLEVK Unmodified 1902.0211 0.021076378 1188 P52789 HK2 Hexokinase-2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 53.153 53.286 4 4.6037E-21 15180 20211116_3445_TMUAki_TMT10x_S_F6 160.81 133.14 6996000 11366000 31192 12419000 9386000 11124000 7546300 9528400 7816500 7877600 8844300 6514000 10610000 625450 12576000 8954300 11377000 7759100 9719000 7976600 7761700 8500000 4 4 1 4 4 4 4 4 4 4 4 3592400 5545300 0 5979400 6298100 8208100 4813800 4845000 4568100 4118400 4375800 3344800 5176000 320370 6102600 6000600 8148800 4952900 5074100 4651100 4052200 4227100 2 2 0 2 2 2 2 2 2 2 2 3403500 5820900 31192 6439800 3087900 2916300 2732500 4683400 3248500 3759200 4468600 3169200 5433800 305080 6473300 2953700 3228000 2806300 4644900 3325500 3709500 4272900 2 2 1 2 2 2 2 2 2 2 2 1555100000 554750000 1000400000 19013 1188 17463 97047;97048;97049 117564;117565;117566;117567 117567 4 TLENELDELDPDNALLPAGLR Unmodified 2307.1594 0.15942035 841 P28289 TMOD1 Tropomodulin-1 yes yes 0 0 0 0 By MS/MS 1 0 1 1 79.93 79.893 3 7.9996E-08 28171 20211116_3439_TMUAki_TMT10x_S_F1 87.352 66.971 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19014 841 17464 97050 117568 117568 1 TLENPEPLLR Unmodified 1180.6452 0.64518747 3296 Q9Y4C2;Q9Y4C2-2 TCAF1 TRPM8 channel-associated factor 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 49.604 49.736 2 2.7095E-05 15872 20211116_3430_TMUAki_TMT10x_P_F3 104.05 73.436 1954400 3188400 9242.8 3799200 1902700 1731000 1771900 2754300 2789900 2387800 2961600 1819800 2977400 169920 3801800 1821600 1914000 1835700 2737700 2799800 2347100 2851700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1954400 3188400 9242.8 3799200 1902700 1731000 1771900 2754300 2789900 2387800 2961600 1819800 2977400 169920 3801800 1821600 1914000 1835700 2737700 2799800 2347100 2851700 1 1 1 1 1 1 1 1 1 1 1 134430000 0 134430000 19015 3296 17465 97051;97052;97053 117569;117570;117571 117569 3 TLENQSHETLERENQECPR Unmodified 2369.0666 0.066599375 1080 P48681 NES Nestin yes yes 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 29.53 29.427 4 1.1517E-63 7329 20211116_3429_TMUAki_TMT10x_P_F2 268.3 250.29 187120 298940 762.99 343810 270440 312460 158100 255240 278040 204840 422630 174230 279110 10552 347110 256530 318960 169960 260890 282740 202140 403220 3 3 2 3 3 3 3 3 3 3 3 78835 123180 578.19 162640 190200 238870 100260 99415 118060 83486 132450 73407 115090 8634.6 164270 180150 235510 106950 107640 119840 82193 127320 1 1 1 1 1 1 1 1 1 1 1 108280 175760 184.79 181170 80234 73593 57846 155820 159990 121360 290190 100820 164030 1917.5 182830 76381 83455 63008 153250 162910 119940 275900 2 2 1 2 2 2 2 2 2 2 2 29984000 23146000 6838700 19016 1080 17466 97054;97055;97056;97057 117572;117573 117572 2 TLEPQELAR Unmodified 1055.5611 0.56112349 2315 Q8WWM7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7-3 ATXN2L Ataxin-2-like protein yes no 0 0 0 0 By MS/MS By MS/MS 2.8 0.748 2 2 1 2 3 39.568 39.515 2 0.00081841 13019 20211116_3441_TMUAki_TMT10x_S_F3 111.06 69.411 3286800 4932000 46907 6391400 6143300 4683900 3625900 4153700 4981800 3330000 4947400 3060700 4607600 356220 6391700 5830000 4865100 3851500 4225300 5007500 3286200 4773700 6 6 6 6 6 6 6 6 6 6 6 1350800 1874600 18670 2589900 4553700 3290500 1966000 1645500 2027000 1307500 2000300 1257900 1751800 174250 2602100 4302400 3272000 2131400 1745900 2058500 1290900 1930500 3 3 3 3 3 3 3 3 3 3 3 1935900 3057500 28237 3801500 1589600 1393400 1660000 2508300 2954800 2022600 2947100 1802700 2855700 181970 3789600 1527600 1593100 1720200 2479400 2949000 1995300 2843200 3 3 3 3 3 3 3 3 3 3 3 185010000 101800000 83202000 19017 2315 17467 97058;97059;97060;97061;97062 117574;117575;117576;117577;117578;117579 117578 6 TLEPVRPPVVPNDYVPSPTR Unmodified 2232.1903 0.19026697 3017 Q9NYB9;Q9NYB9-2;Q9NYB9-3;Q9NYB9-4 ABI2 Abl interactor 2 yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 55.842 55.881 3 4.397E-09 15979 20211116_3447_TMUAki_TMT10x_S_F8 112.57 87.514 6794400 11927000 68250 11365000 10663000 11564000 9569200 7604400 6671300 7760800 9175900 6326300 11127000 621840 11637000 10197000 11680000 9673900 7936100 7002600 7573200 8774100 2 2 1 2 2 2 2 2 2 2 2 3974300 6524500 0 6421900 7419500 8911200 6788900 4366300 3657200 4772700 5441100 3700000 6087600 318500 6595900 7094500 8822500 6822300 4680900 3920900 4644500 5193600 1 1 0 1 1 1 1 1 1 1 1 2820100 5402000 68250 4943200 3243100 2653000 2780300 3238100 3014100 2988100 3734800 2626300 5039000 303340 5041000 3102100 2857100 2851600 3255200 3081700 2928700 3580500 1 1 1 1 1 1 1 1 1 1 1 875180000 484750000 390430000 19018 3017 17468 97063;97064 117580;117581 117581 2 TLEQHDNIVTHYK Unmodified 1596.7896 0.78961988 288 O60763;O60763-2 USO1 General vesicular transport factor p115 yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 34.716 34.781 4 5.8155E-05 8719 20211116_3433_TMUAki_TMT10x_P_F5 97.203 78.79 1943500 3037400 10737 3778600 4469600 3944200 2427600 2795600 2800300 2415700 2969500 1809700 2837000 200850 3804900 4234600 3982100 2580700 2888900 2838500 2375000 2859300 5 5 3 5 5 5 5 5 5 5 5 1361600 2119900 8441 2696800 3964300 3492600 1878700 2088600 2042600 1838200 2080200 1267800 1980200 155480 2722400 3749100 3477400 2019700 2186900 2072200 1805600 2005500 3 3 2 3 3 3 3 3 3 3 3 581940 917510 2296.1 1081800 505320 451580 548890 706990 757660 577540 889320 541830 856750 45367 1082500 485500 504650 560950 702050 766330 569390 853820 2 2 1 2 2 2 2 2 2 2 2 84328000 62384000 21944000 19019 288 17469 97065;97066 117582;117583;117584;117585;117586 117582 5 TLESSIQGLR Unmodified 1102.5982 0.59823728 2361 Q92747 ARPC1A Actin-related protein 2/3 complex subunit 1A yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 47.465 47.625 2 4.6306E-07 13730 20211116_3442_TMUAki_TMT10x_S_F4 111.06 73.91 10841000 17704000 192150 21860000 22961000 23176000 13973000 16741000 17663000 14631000 16889000 10095000 16535000 1247600 22027000 21802000 23384000 14758000 17283000 17781000 14376000 16316000 4 4 4 4 4 4 4 4 4 4 4 7783400 12534000 180010 15373000 20401000 20682000 11887000 11855000 12347000 10070000 11790000 7248500 11706000 989780 15562000 19358000 20543000 12516000 12445000 12521000 9908700 11391000 3 3 3 3 3 3 3 3 3 3 3 3057200 5169900 12147 6487200 2559700 2494300 2086500 4886300 5316300 4560600 5098500 2846700 4829000 257820 6465300 2443200 2841100 2241100 4837600 5259400 4467500 4925100 1 1 1 1 1 1 1 1 1 1 1 803460000 675910000 127540000 19020 2361 17470 97067;97068;97069;97070 117587;117588;117589;117590;117591 117590 5 TLESVDPLGGLNTIDILTAIR Unmodified 2210.2158 0.21581302 87 O00429;O00429-2;O00429-4;O00429-3;O00429-5;O00429-9;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 By MS/MS By MS/MS 6 1.15 3 1 1 1 3 3 81.738 81.75 3 5.0147E-56 28975 20211116_3446_TMUAki_TMT10x_S_F7 235.24 210.18 3055900 4887900 17029 4930400 3708600 4032200 4133400 2802100 2754000 3037900 3630600 2845400 4561100 270180 5013300 3567200 4135500 4127800 2918100 2893200 2957300 3475100 3 3 2 3 3 3 3 3 3 3 3 607850 975650 4882.2 1002600 585370 1267200 890320 556740 594380 663720 826450 566010 910480 54630 1024900 569240 1258700 877980 605120 625870 643820 790060 1 1 1 1 1 1 1 1 1 1 1 2448000 3912200 12147 3927700 3123300 2764900 3243100 2245300 2159700 2374200 2804100 2279400 3650600 215550 3988500 2997900 2876800 3249800 2313000 2267400 2313500 2685100 2 2 1 2 2 2 2 2 2 2 2 1450500000 279380000 1171100000 19021 87 17471 97071;97072;97073;97074;97075;97076 117592;117593;117594;117595;117596 117596 5 TLETLIR Unmodified 844.50182 0.5018177 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 2 3 49.603 49.765 2 0.0063095 14600 20211116_3433_TMUAki_TMT10x_P_F5 104.11 41.397 8426300 12692000 12127 14601000 12109000 10994000 8337300 10523000 10306000 9736900 11089000 7845400 11850000 712140 14706000 11513000 11412000 8715000 10700000 10426000 9542000 10673000 3 3 1 3 3 3 3 3 3 3 3 3398500 4811000 0 5587100 7327700 7069300 3874100 4336600 4057300 3778900 4350600 3164100 4492100 301770 5667100 6937000 7048900 4115900 4530400 4130000 3713700 4187800 1 1 0 1 1 1 1 1 1 1 1 5027800 7881300 12127 9013500 4780900 3925100 4463100 6186700 6248600 5958000 6738500 4681300 7358300 410370 9039200 4576000 4363400 4599000 6169200 6296100 5828300 6485200 2 2 1 2 2 2 2 2 2 2 2 886060000 425390000 460670000 19022 799 17472 97077;97078;97079;97080;97081 117597;117598;117599;117600;117601 117597 5 TLETQSALGPALQAAFK Unmodified 1744.9359 0.93594977 435 O95486 SEC24A Protein transport protein Sec24A yes yes 0 0 0 0 By matching By MS/MS 8 0 2 1 1 74.579 74.523 3 0.00019569 23611 20211116_3447_TMUAki_TMT10x_S_F8 74.726 59.753 4193800 7416000 82990 6100400 4953000 5176500 4659100 5197800 5192200 5264500 5662800 3905500 6915000 435670 6302500 4746800 5330900 4757800 5285700 5275500 5138800 5448100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4193800 7416000 82990 6100400 4953000 5176500 4659100 5197800 5192200 5264500 5662800 3905500 6915000 435670 6302500 4746800 5330900 4757800 5285700 5275500 5138800 5448100 2 2 2 2 2 2 2 2 2 2 2 770860000 464670000 306180000 19023 435 17473 97082;97083 117602;117603 117603 2 TLETVPLER Unmodified 1056.5815 0.58152458 772 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 0 0 0 0 By MS/MS By MS/MS 3 1.76 2 2 2 2 1 4 5 44.177 44.183 2 1.4765E-06 12358 20211116_3442_TMUAki_TMT10x_S_F4 195.45 141.25 24407000 37802000 94431 44545000 50808000 44195000 29174000 37335000 41799000 31742000 38924000 22724000 35298000 2212400 44961000 48161000 44891000 31114000 38138000 41869000 31232000 37637000 10 10 4 10 10 10 10 10 10 10 10 12966000 19714000 65874 22964000 39403000 33901000 18080000 19636000 22527000 17154000 20533000 12072000 18407000 1321400 23361000 37237000 33540000 19592000 20611000 22652000 16856000 19869000 5 5 2 5 5 5 5 5 5 5 5 11440000 18088000 28557 21580000 11405000 10295000 11093000 17698000 19272000 14588000 18391000 10652000 16891000 890990 21600000 10924000 11350000 11522000 17528000 19217000 14376000 17768000 5 5 2 5 5 5 5 5 5 5 5 6663800000 4039500000 2624300000 19024 772 17474 97084;97085;97086;97087;97088;97089;97090;97091;97092 117604;117605;117606;117607;117608;117609;117610;117611;117612;117613 117612 10 TLETVPLERK Unmodified 1184.6765 0.6764876 772 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 0 0 0 1 By MS/MS 6 0 1 1 39.514 39.677 3 0.0061135 9680 20211116_3445_TMUAki_TMT10x_S_F6 65.879 49.305 699550 1060600 375.92 1327600 747160 500700 676790 675360 733400 594670 908780 651350 990660 58817 1323200 714660 565010 691930 675430 749860 584110 871240 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 699550 1060600 375.92 1327600 747160 500700 676790 675360 733400 594670 908780 651350 990660 58817 1323200 714660 565010 691930 675430 749860 584110 871240 2 2 1 2 2 2 2 2 2 2 2 19599000 0 19599000 19025 772 17475 97093 117614;117615 117615 2 TLEVEIEPGVR Unmodified 1240.6663 0.66631685 3086 Q9UBS4 DNAJB11 DnaJ homolog subfamily B member 11 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.745 3 2 1 2 4 52.431 52.182 2 6.5179E-08 18018 20211116_3441_TMUAki_TMT10x_S_F3 142.98 102.26 7948000 13203000 103880 12740000 10498000 13902000 9430600 11972000 11009000 10641000 11393000 7400900 12318000 753720 13047000 10043000 14047000 9670600 12230000 11144000 10448000 10978000 4 4 2 4 4 4 4 4 4 4 4 4017100 6828200 74922 6239500 6542400 9866200 5472100 6430600 5850500 5520600 5803900 3740700 6369200 410670 6461100 6249000 9750100 5618200 6684300 5933700 5429200 5600200 2 2 1 2 2 2 2 2 2 2 2 3930900 6374900 28955 6500200 3955200 4035600 3958600 5541500 5158400 5120600 5589000 3660200 5948900 343040 6585500 3793600 4297000 4052300 5545600 5210600 5018400 5378200 2 2 1 2 2 2 2 2 2 2 2 503190000 363760000 139430000 19026 3086 17476 97094;97095;97096;97097;97098;97099 117616;117617;117618;117619;117620;117621;117622 117621 7 TLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLR Oxidation (M) 3753.7468 0.74683495 3086 Q9UBS4 DNAJB11 DnaJ homolog subfamily B member 11 yes yes 0 0 1 1 By MS/MS 1 0 1 1 69.099 68.91 4 4.4278E-07 23812 20211116_3439_TMUAki_TMT10x_S_F1 78.588 73.583 5642700 9758300 31155 10762000 6766000 7487700 6550800 6834100 7667900 6639300 7551300 5254100 9109300 512590 10859000 6484000 7815200 6690600 6975600 7747800 6492300 7288100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5642700 9758300 31155 10762000 6766000 7487700 6550800 6834100 7667900 6639300 7551300 5254100 9109300 512590 10859000 6484000 7815200 6690600 6975600 7747800 6492300 7288100 2 2 2 2 2 2 2 2 2 2 2 1910700000 0 1910700000 19027 3086 17477 97100 117623;117624 117624 3130 2 TLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLR Unmodified 3737.7519 0.75192033 3086 Q9UBS4 DNAJB11 DnaJ homolog subfamily B member 11 yes yes 0 0 0 1 By matching By MS/MS 1 0 2 1 1 73.628 73.573 4 1.2972E-10 25657 20211116_3439_TMUAki_TMT10x_S_F1 83.633 78.421 1608400 2616300 30799 2700100 2397900 1592200 1900400 1033300 1258400 1257700 1929700 1497800 2441600 173110 2732100 2288500 1677800 1933800 1085500 1332200 1219000 1840700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1608400 2616300 30799 2700100 2397900 1592200 1900400 1033300 1258400 1257700 1929700 1497800 2441600 173110 2732100 2288500 1677800 1933800 1085500 1332200 1219000 1840700 1 1 1 1 1 1 1 1 1 1 1 1431900000 950850000 481020000 19028 3086 17477 97101;97102 117625 117625 1 TLFGFLGK Unmodified 881.50109 0.50108942 1519 Q05519;Q05519-2 SRSF11 Serine/arginine-rich splicing factor 11 yes no 0 0 0 0 By MS/MS By MS/MS 3.86 0.833 3 2 2 3 4 77.563 77.543 2 0.00043755 25689 20211116_3431_TMUAki_TMT10x_P_F4 148.98 84.206 83762000 139770000 851930 132590000 101530000 132110000 100600000 106670000 88697000 103050000 94790000 77996000 130400000 7872100 135760000 97373000 134040000 101720000 109630000 90971000 100790000 91251000 4 4 3 4 4 4 4 4 4 4 4 46802000 77449000 133690 71892000 53650000 90992000 57779000 55103000 55901000 58309000 57715000 43577000 72247000 3985500 74020000 51547000 90712000 58333000 57932000 57016000 56816000 55620000 2 2 1 2 2 2 2 2 2 2 2 36960000 62326000 718240 60696000 47881000 41118000 42821000 51568000 32796000 44737000 37074000 34419000 58150000 3886600 61742000 45827000 43330000 43389000 51699000 33955000 43973000 35632000 2 2 2 2 2 2 2 2 2 2 2 6672400000 3401700000 3270700000 19029 1519 17478 97103;97104;97105;97106;97107;97108;97109 117626;117627;117628;117629;117630;117631 117627 6 TLFNELR Unmodified 891.48142 0.48141661 1263 P57088 TMEM33 Transmembrane protein 33 yes yes 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 51.465 51.609 2 0.0027575 14473 20211116_3445_TMUAki_TMT10x_S_F6 122.18 55.144 18916000 30915000 14051 34403000 27042000 31517000 19557000 27620000 24147000 24207000 27426000 17611000 28860000 1532500 34808000 25731000 32198000 20371000 28177000 24481000 23782000 26356000 4 4 1 4 4 4 4 4 4 4 4 8762800 14060000 0 15686000 19271000 22546000 11433000 12763000 11203000 11290000 12466000 8157700 13126000 711670 15990000 18271000 22326000 12000000 13426000 11452000 11087000 11986000 2 2 0 2 2 2 2 2 2 2 2 10153000 16855000 14051 18718000 7770600 8970200 8123500 14857000 12944000 12916000 14961000 9453300 15735000 820830 18818000 7460500 9871800 8370800 14751000 13028000 12695000 14370000 2 2 1 2 2 2 2 2 2 2 2 1034600000 697570000 336980000 19030 1263 17479 97110;97111;97112;97113;97114 117632;117633;117634;117635;117636;117637 117637 6 TLFPLIEAK Unmodified 1030.6063 0.60628277 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 5.83 2.62 4 1 1 2 2 4 10 9 15 74.716 74.731 2;3 1.9785E-07 23456 20211116_3447_TMUAki_TMT10x_S_F8 202.28 123.16 201190000 329390000 1059900 324460000 241880000 268460000 207470000 265750000 256610000 259510000 276810000 187330000 307330000 17397000 330520000 231070000 276880000 213760000 270140000 259630000 253710000 266410000 22 22 11 22 22 22 22 22 22 22 22 61712000 96261000 245680 95171000 78534000 129130000 70100000 78434000 74787000 75610000 78522000 57460000 89818000 5405900 97675000 75094000 128320000 71692000 82221000 76010000 73961000 75632000 8 8 5 8 8 8 8 8 8 8 8 139480000 233120000 814190 229290000 163350000 139320000 137370000 187310000 181830000 183900000 198290000 129870000 217520000 11991000 232840000 155980000 148560000 142070000 187920000 183620000 179750000 190770000 14 14 6 14 14 14 14 14 14 14 14 46972000000 25273000000 21699000000 19031 648 17480 97115;97116;97117;97118;97119;97120;97121;97122;97123;97124;97125;97126;97127;97128;97129;97130;97131;97132;97133;97134;97135;97136;97137;97138 117638;117639;117640;117641;117642;117643;117644;117645;117646;117647;117648;117649;117650;117651;117652;117653;117654;117655;117656;117657;117658;117659;117660;117661;117662;117663;117664;117665 117657 28 TLFQPQTGAYQTLAK Unmodified 1665.8726 0.87262123 1214 P53992 SEC24C Protein transport protein Sec24C yes yes 0 0 0 0 By MS/MS 2 0 1 1 62.331 62.093 3 5.0592E-07 19257 20211116_3440_TMUAki_TMT10x_S_F2 115.26 95.935 13974000 25553000 291520 22750000 15384000 16163000 16858000 20799000 19194000 19556000 19402000 13014000 23833000 1450000 23308000 14805000 16976000 17095000 20876000 19432000 19150000 18710000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13974000 25553000 291520 22750000 15384000 16163000 16858000 20799000 19194000 19556000 19402000 13014000 23833000 1450000 23308000 14805000 16976000 17095000 20876000 19432000 19150000 18710000 3 3 3 3 3 3 3 3 3 3 3 552960000 0 552960000 19032 1214 17481 97139 117666;117667;117668 117667 3 TLFSNIVLSGGSTLFK Unmodified 1682.9243 0.92432245 1298 P61163 ACTR1A Alpha-centractin yes yes 0 0 0 0 By MS/MS By MS/MS 6.2 0.4 4 1 2 3 80.097 80.1 2;3 5.0825E-30 26167 20211116_3445_TMUAki_TMT10x_S_F6 198.74 163.33 14586000 24726000 35849 22830000 13996000 19585000 18506000 10587000 11915000 13059000 18074000 13581000 23065000 774060 23376000 13531000 19950000 18331000 11292000 12628000 12653000 17244000 4 4 1 4 4 4 4 4 4 4 4 7427200 11948000 0 11891000 7363700 11962000 7604600 4926800 5774000 6372300 8633400 6914800 11148000 540170 12136000 7061900 12023000 7644400 5407500 6055600 6164000 8239800 2 2 0 2 2 2 2 2 2 2 2 7159200 12778000 35849 10939000 6632600 7623800 10901000 5660100 6140600 6687200 9440300 6666200 11917000 233900 11240000 6469100 7927000 10687000 5884700 6572400 6488700 9004600 2 2 1 2 2 2 2 2 2 2 2 4248100000 1361600000 2886500000 19033 1298 17482 97140;97141;97142;97143;97144 117669;117670;117671;117672 117672 4 TLGDFAAEYAK Unmodified 1184.5714 0.57135383 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.78 0.786 4 3 2 4 5 62.36 62.408 2;3 7.9288E-17 19458 20211116_3431_TMUAki_TMT10x_P_F4 217.66 187.09 50228000 82955000 128670 94529000 74886000 88909000 59161000 72912000 76926000 66658000 70476000 46763000 77449000 3989900 95534000 71375000 90562000 61382000 74752000 77253000 65359000 68185000 8 8 2 8 8 8 8 8 8 8 8 29493000 47473000 128670 55052000 53849000 70557000 43452000 40204000 43700000 38866000 40182000 27459000 44326000 2521800 55858000 51354000 70240000 44627000 42369000 44322000 38013000 38871000 5 5 2 5 5 5 5 5 5 5 5 20734000 35482000 0 39478000 21037000 18352000 15709000 32708000 33226000 27792000 30293000 19304000 33124000 1468000 39676000 20021000 20322000 16755000 32384000 32931000 27346000 29314000 3 3 0 3 3 3 3 3 3 3 3 5309300000 3115500000 2193800000 19034 586 17483 97145;97146;97147;97148;97149;97150;97151;97152;97153 117673;117674;117675;117676;117677;117678;117679;117680;117681;117682 117673 10 TLGECGFTSQTARPQAPATVGLAFR Unmodified 2635.3177 0.3176691 1794 Q15370;Q15370-2 TCEB2 Transcription elongation factor B polypeptide 2 yes no 0 0 0 1 By MS/MS By MS/MS 2.58 1.8 3 4 4 1 7 5 58.327 58.107 3;4 6.0133E-237 19361 20211116_3430_TMUAki_TMT10x_P_F3 459.25 432.93 89907000 155220000 800880 145970000 104140000 118710000 98864000 71600000 70873000 78682000 103650000 83710000 144800000 7129600 149160000 99706000 121550000 99692000 75387000 74489000 76553000 98972000 16 16 5 16 16 16 16 16 16 16 16 40995000 64777000 204190 61878000 39609000 69599000 43317000 32865000 33212000 35214000 45770000 38167000 60433000 2964600 63446000 38045000 69601000 43431000 35339000 34675000 34295000 43764000 8 8 3 8 8 8 8 8 8 8 8 48912000 90440000 596690 84094000 64529000 49108000 55548000 38735000 37661000 43468000 57879000 45544000 84366000 4165000 85715000 61661000 51953000 56260000 40048000 39814000 42258000 55208000 8 8 2 8 8 8 8 8 8 8 8 30255000000 15228000000 15026000000 19035 1794 17484 97154;97155;97156;97157;97158;97159;97160;97161;97162;97163;97164;97165 117683;117684;117685;117686;117687;117688;117689;117690;117691;117692;117693;117694;117695;117696;117697;117698;117699 117688 17 TLGGLEMELR Unmodified 1117.5801 0.58014438 3301 Q9Y4L1;Q9Y4L1-2 HYOU1 Hypoxia up-regulated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 59.595 59.604 2 0.00039258 18811 20211116_3442_TMUAki_TMT10x_S_F4 110.76 51.941 11450000 17899000 0 19633000 15151000 17137000 13962000 10793000 9544800 10366000 13765000 10660000 16708000 957410 19869000 14495000 17470000 14088000 11281000 10053000 10142000 13148000 2 2 0 2 2 2 2 2 2 2 2 7146800 10743000 0 11605000 10161000 13849000 10042000 6868700 6099700 6590900 8582900 6654000 10027000 597800 11811000 9737500 13813000 10070000 7327600 6466000 6448500 8202700 1 1 0 1 1 1 1 1 1 1 1 4302800 7156000 0 8028800 4990000 3288800 3920100 3924700 3445100 3775400 5182100 4006300 6680600 359600 8058200 4757300 3657100 4017600 3953800 3587300 3693400 4945200 1 1 0 1 1 1 1 1 1 1 1 544690000 256890000 287800000 19036 3301 17485 97166;97167 117700;117701 117701 2 TLGILGLGR Unmodified 898.56 0.56000128 201 O43175 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 62.337 62.126 2 1.6937E-07 22074 20211116_3441_TMUAki_TMT10x_S_F3 204.65 129.46 29392000 52972000 17074 46430000 52749000 69531000 40964000 64385000 61453000 49705000 54037000 27365000 49404000 2104800 48174000 50268000 69293000 42802000 65282000 61358000 49149000 52357000 6 6 1 6 6 6 6 6 6 6 6 13711000 23815000 17074 21619000 31424000 49917000 23908000 29602000 28744000 23613000 25109000 12766000 22214000 1312900 22633000 29937000 48650000 24793000 30943000 28902000 23308000 24334000 3 3 1 3 3 3 3 3 3 3 3 15681000 29157000 0 24811000 21325000 19614000 17056000 34783000 32708000 26092000 28927000 14599000 27190000 791940 25541000 20331000 20643000 18008000 34339000 32456000 25841000 28022000 3 3 0 3 3 3 3 3 3 3 3 6560100000 3583800000 2976300000 19037 201 17486 97168;97169;97170;97171;97172;97173;97174;97175 117702;117703;117704;117705;117706;117707;117708;117709 117708 8 TLGKDHPAVAATLNNLAVLYGKR Unmodified 2421.3492 0.34922723 2770;1541 Q07866;Q07866-4;Q07866-6;Q07866-7;Q07866-2;Q07866-8;Q07866-3;Q07866-5;Q07866-10;Q07866-9;Q9H0B6;Q9H0B6-2 KLC1;KLC2 Kinesin light chain 1;Kinesin light chain 2 no no 0 0 0 2 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 61.42 61.819 5 7.3325E-21 20608 20211116_3446_TMUAki_TMT10x_S_F7 153.19 137.43 32940000 57449000 314960 53010000 46134000 39836000 34478000 37573000 33309000 35350000 44322000 30672000 53590000 3077000 54196000 43953000 41344000 35546000 38250000 34328000 34616000 42415000 5 5 3 5 5 5 5 5 5 5 5 5637400 9315800 11679 8945400 8051000 12013000 7316800 6442400 5481700 6425700 7269200 5249000 8691200 512060 9197800 7701900 11924000 7403300 6830900 5720400 6276300 6957000 1 1 1 1 1 1 1 1 1 1 1 27303000 48133000 303280 44065000 38083000 27822000 27162000 31131000 27827000 28924000 37053000 25423000 44898000 2565000 44998000 36251000 29420000 28143000 31419000 28608000 28340000 35458000 4 4 2 4 4 4 4 4 4 4 4 4485300000 1930000000 2555300000 19038 1541;2770 17487 97176;97177;97178 117710;117711;117712;117713;117714 117713 5 TLGLYGK Unmodified 750.42759 0.42759012 571 P09211 GSTP1 Glutathione S-transferase P yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 47.592 47.921 2 0.0054826 12692 20211116_3447_TMUAki_TMT10x_S_F8 108.24 58.199 18287000 28381000 107340 32077000 20711000 22820000 19658000 20823000 21883000 19371000 24529000 17028000 26496000 1564000 32324000 19833000 23774000 20063000 21229000 22259000 18978000 23580000 3 3 1 3 3 3 3 3 3 3 3 6346000 9698400 107340 11079000 10491000 13161000 7628700 8359300 9352500 7969100 9508800 5909500 9054800 684210 11236000 9993500 13172000 7941100 8729800 9444700 7799100 9168000 1 1 1 1 1 1 1 1 1 1 1 11941000 18683000 0 20998000 10220000 9659000 12029000 12464000 12531000 11402000 15020000 11118000 17442000 879820 21088000 9839400 10602000 12122000 12499000 12814000 11179000 14412000 2 2 0 2 2 2 2 2 2 2 2 697830000 175240000 522590000 19039 571 17488 97179;97180;97181;97182;97183;97184 117715;117716;117717;117718;117719 117719 5 TLGLYGKDQQEAALVDMVNDGVEDLR Oxidation (M) 2864.3862 0.38620218 571 P09211 GSTP1 Glutathione S-transferase P yes yes 0 0 1 1 By MS/MS By MS/MS 3.36 1.69 4 4 4 3 4 3 10 12 74.671 74.602 3;4 3.1198E-31 24182 20211116_3440_TMUAki_TMT10x_S_F2 178.39 170.75 146100000 270260000 930570 190120000 218430000 293900000 207600000 238540000 225360000 236800000 228430000 136030000 251890000 11439000 201170000 209120000 291760000 211690000 245270000 228600000 231340000 220260000 46 46 21 46 46 46 46 46 46 46 46 63912000 115580000 348040 79207000 64747000 155000000 81865000 106080000 100640000 102850000 98999000 59507000 107710000 4193300 84507000 62500000 152130000 82726000 110230000 101500000 100590000 95552000 19 19 9 19 19 19 19 19 19 19 19 82191000 154680000 582530 110920000 153690000 138900000 125730000 132450000 124720000 133950000 129430000 76524000 144170000 7245700 116660000 146620000 139640000 128970000 135040000 127090000 130760000 124710000 27 27 12 27 27 27 27 27 27 27 27 61412000000 28539000000 32872000000 19040 571 17489 97185;97186;97187;97188;97189;97190;97191;97192;97193;97194;97195;97196;97197;97198;97199;97200;97201;97202;97203;97204;97205;97206 117720;117721;117722;117723;117724;117725;117726;117727;117728;117729;117730;117731;117732;117733;117734;117735;117736;117737;117738;117739;117740;117741;117742;117743;117744;117745;117746;117747;117748;117749;117750;117751;117752;117753;117754;117755;117756;117757;117758;117759;117760;117761;117762;117763;117764;117765 117746 539 46 TLGLYGKDQQEAALVDMVNDGVEDLR Unmodified 2848.3913 0.39128756 571 P09211 GSTP1 Glutathione S-transferase P yes yes 0 0 0 1 By MS/MS By MS/MS 3 1.41 2 2 2 2 2 5 5 78.69 78.665 3 4.2595E-39 25933 20211116_3440_TMUAki_TMT10x_S_F2 191.62 179.99 90152000 163690000 188180 129850000 124470000 104950000 130040000 33345000 22781000 44779000 101660000 83929000 152610000 6471600 134490000 119390000 106840000 128290000 37859000 30668000 43262000 95623000 13 13 4 13 13 13 13 13 13 13 13 49363000 85053000 102390 65955000 48144000 61660000 67170000 17436000 11074000 21781000 52317000 45957000 79293000 3540400 68569000 46606000 62086000 65402000 20089000 15185000 21094000 49192000 6 6 3 6 6 6 6 6 6 6 6 40789000 78635000 85791 63896000 76324000 43290000 62871000 15909000 11706000 22998000 49340000 37971000 73320000 2931200 65917000 72783000 44757000 62892000 17769000 15483000 22169000 46431000 7 7 1 7 7 7 7 7 7 7 7 26853000000 13031000000 13822000000 19041 571 17489 97207;97208;97209;97210;97211;97212;97213;97214;97215;97216 117766;117767;117768;117769;117770;117771;117772;117773;117774;117775;117776;117777;117778 117773 13 TLGMAISERPDLR Unmodified 1457.766 0.76604767 1920 Q5JTH9;Q5JTH9-2;Q5JTH9-3 RRP12 RRP12-like protein yes no 0 0 0 1 By MS/MS By matching 6 0 2 1 1 46.548 46.671 3 0.0021226 12107 20211116_3434_TMUAki_TMT10x_P_F6 68.972 52.719 1667100 2341400 40045 2972400 3528000 3417800 2295500 1744100 1705600 1547800 2352200 1552600 2187200 201600 2994400 3354300 3416700 2374600 1851900 1784000 1519800 2249000 1 1 1 1 1 1 1 1 1 1 1 1667100 2341400 40045 2972400 3528000 3417800 2295500 1744100 1705600 1547800 2352200 1552600 2187200 201600 2994400 3354300 3416700 2374600 1851900 1784000 1519800 2249000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 277570000 202640000 74928000 19042 1920 17490 97217;97218 117779 117779 1 TLGSFEFEGHSLTQFVR Unmodified 1953.9585 0.95847612 1012 P42345 MTOR Serine/threonine-protein kinase mTOR yes yes 0 0 0 0 By MS/MS 8 0 1 1 69.484 69.572 3 0.0092785 22107 20211116_3436_TMUAki_TMT10x_P_F8 51.798 37.107 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19043 1012 17491 97219 117780 117780 1 TLGTGSFGR Unmodified 894.45593 0.45593014 706;773 P17612;P17612-2;P22694-10;P22694;P22694-2;P22694-8;P22694-4;P22694-3;P22694-5;P22694-7;P22694-6;P22694-9 PRKACA;PRKACB cAMP-dependent protein kinase catalytic subunit alpha;cAMP-dependent protein kinase catalytic subunit beta no no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 35.836 36.261 2 1.8769E-05 8442 20211116_3436_TMUAki_TMT10x_P_F8 157.2 123.76 858990 1347300 0 1337100 1374100 1196500 1061500 794440 883650 787720 1078800 799770 1257100 73126 1362700 1309400 1218500 1087600 827820 913670 769610 1034600 2 2 0 2 2 2 2 2 2 2 2 428730 620640 0 630840 847130 755810 478680 372730 420440 375940 513210 399160 579160 38750 644710 802830 753650 503000 398400 433570 367030 492200 1 1 0 1 1 1 1 1 1 1 1 430270 726630 0 706230 527010 440660 582860 421710 463210 411780 565600 400600 677950 34376 717940 506560 464870 584600 429420 480110 402570 542440 1 1 0 1 1 1 1 1 1 1 1 58950000 34289000 24661000 19044 706;773 17492 97220;97221 117781;117782 117781 2 TLGTMIAGDTSGDYRR Oxidation (M) 1728.8101 0.81009732 739 P20073;P20073-2 ANXA7 Annexin A7 yes no 0 0 1 1 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 36.165 36.242 3 6.4564E-23 7878 20211116_3444_TMUAki_TMT10x_S_F5 179.55 161.19 2316000 3891200 44813 4751300 5249500 5729000 3109900 4130800 4790300 3248100 3847200 2156700 3634100 269640 4801000 4982100 5740100 3318400 4254100 4766300 3208600 3740400 8 8 5 8 8 8 8 8 8 8 8 1538300 2634400 38624 3221500 4616400 5087300 2471600 2938000 3451400 2240200 2597200 1432600 2460400 203870 3272900 4374700 5019300 2649500 3074800 3438000 2216700 2531800 3 3 2 3 3 3 3 3 3 3 3 777720 1256800 6189.4 1529900 633130 641640 638310 1192800 1338900 1007900 1250000 724160 1173800 65770 1528100 607420 720830 668880 1179400 1328300 991940 1208600 5 5 3 5 5 5 5 5 5 5 5 1121100000 945410000 175720000 19045 739 17493 97222;97223;97224;97225;97226;97227 117783;117784;117785;117786;117787;117788;117789;117790 117787 847 8 TLGVDLVALATR Unmodified 1227.7187 0.71868677 831 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 75.553 75.567 2 2.1266E-16 24596 20211116_3436_TMUAki_TMT10x_P_F8 204.56 172.63 3590900 6003500 12340 5246600 3515100 6952400 3936600 4155800 4000600 3978000 4497600 3343600 5599000 308150 5431400 3381800 6914600 3973000 4361100 4084700 3892500 4323300 1 1 1 1 1 1 1 1 1 1 1 3590900 6003500 12340 5246600 3515100 6952400 3936600 4155800 4000600 3978000 4497600 3343600 5599000 308150 5431400 3381800 6914600 3973000 4361100 4084700 3892500 4323300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 399760000 399760000 0 19046 831 17494 97228;97229;97230 117791;117792;117793 117791 3 TLHNLVIQYASQGR Unmodified 1598.8529 0.85288884 2770;1541 Q07866;Q07866-4;Q07866-6;Q07866-7;Q07866-2;Q07866-8;Q07866-3;Q07866-5;Q07866-10;Q07866-9;Q9H0B6;Q9H0B6-2 KLC1;KLC2 Kinesin light chain 1;Kinesin light chain 2 no no 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 50.055 49.972 3 1.7835E-14 16029 20211116_3430_TMUAki_TMT10x_P_F3 155.81 127.53 8352200 14034000 283500 15656000 15188000 16997000 10623000 12386000 12699000 11644000 12688000 7778900 13101000 1052400 15877000 14466000 17129000 11079000 12803000 12828000 11403000 12240000 7 7 7 7 7 7 7 7 7 7 7 5311300 8595200 137310 9900900 11908000 13839000 7536000 7745200 7907900 7298100 7837300 4946400 8025100 660690 10067000 11316000 13719000 7884100 8168900 8026200 7146100 7562500 4 4 4 4 4 4 4 4 4 4 4 3040900 5438800 146190 5755200 3280900 3157400 3087300 4640600 4790900 4346400 4850700 2832500 5076200 391720 5810000 3149900 3410100 3194400 4634600 4801400 4257000 4677500 3 3 3 3 3 3 3 3 3 3 3 2857400000 1550600000 1306800000 19047 1541;2770 17495 97231;97232;97233;97234;97235 117794;117795;117796;117797;117798;117799;117800 117794 7 TLHPAVHAGILAR Unmodified 1354.7834 0.78335271 892 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 By MS/MS By MS/MS 1.85 0.662 4 7 2 5 8 32.52 32.459 2;3;4 3.3058E-19 8754 20211116_3429_TMUAki_TMT10x_P_F2 182.71 156.12 6348000 9737500 48547 9454200 9260000 10201000 7017100 6052600 6896900 6560200 7540800 5910500 9085100 557100 9676000 8821900 10253000 7231300 6378500 7044500 6386100 7254400 14 14 9 14 14 14 14 14 14 14 14 4409900 6588700 34695 6202300 7216300 8166000 4804100 4029700 4588300 4431800 5148800 4105900 6146500 386120 6384000 6857500 8104900 4992500 4317900 4697100 4311800 4949500 6 6 4 6 6 6 6 6 6 6 6 1938100 3148900 13852 3251800 2043700 2035000 2212900 2022900 2308600 2128300 2391900 1804600 2938600 170990 3292000 1964400 2147900 2238800 2060500 2347400 2074300 2304800 8 8 5 8 8 8 8 8 8 8 8 2977600000 2204600000 772980000 19048 892 17496 97236;97237;97238;97239;97240;97241;97242;97243;97244;97245;97246;97247;97248 117801;117802;117803;117804;117805;117806;117807;117808;117809;117810;117811;117812;117813;117814;117815;117816 117805 16 TLHPDLGTDK Unmodified 1095.556 0.55603811 462 P00338;P00338-3;P00338-4;P00338-2;P00338-5 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 35.504 35.679 3 1.1954E-05 8768 20211116_3431_TMUAki_TMT10x_P_F4 103.34 73.869 602320 945340 0 1241200 456510 343080 611180 417090 434640 412780 680730 560740 883210 38571 1231900 441010 406570 606390 420210 458630 403320 649060 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 602320 945340 0 1241200 456510 343080 611180 417090 434640 412780 680730 560740 883210 38571 1231900 441010 406570 606390 420210 458630 403320 649060 1 1 0 1 1 1 1 1 1 1 1 37938000 0 37938000 19049 462 17497 97249;97250 117817;117818 117817 2 TLHPDLGTDKDK Unmodified 1338.6779 0.67794416 462 P00338;P00338-3;P00338-4;P00338-2;P00338-5 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 1 By MS/MS 5 0 1 1 35.127 35.088 4 0.01122 8730 20211116_3433_TMUAki_TMT10x_P_F5 60.628 39.399 471300 710560 0 849670 956360 803820 474710 370440 417420 398760 528760 438800 663550 42672 856290 904680 811970 504930 399350 431110 388280 506630 1 1 0 1 1 1 1 1 1 1 1 471300 710560 0 849670 956360 803820 474710 370440 417420 398760 528760 438800 663550 42672 856290 904680 811970 504930 399350 431110 388280 506630 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 67337000 67337000 0 19050 462 17498 97251 117819 117819 1 TLHPDLGTDKDKEQWK Unmodified 1909.9534 0.95339074 462 P00338;P00338-3;P00338-4;P00338-2;P00338-5 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 2 By MS/MS By MS/MS 7 0.816 1 1 1 2 1 42.762 43.037 5 1.0407E-07 12551 20211116_3435_TMUAki_TMT10x_P_F7 117 100.88 22098000 35217000 373120 53605000 45375000 21341000 26057000 21675000 22377000 17805000 38824000 20578000 32930000 2475900 52905000 43043000 23738000 27327000 21905000 23510000 17549000 36943000 6 6 3 6 6 6 6 6 6 6 6 5058600 8102200 167200 12388000 30721000 11138000 12235000 3764900 4154000 3402000 8002300 4711100 7576200 914760 12317000 29001000 11258000 13127000 4189100 4716200 3337600 7600400 3 3 1 3 3 3 3 3 3 3 3 17039000 27115000 205930 41217000 14654000 10203000 13821000 17910000 18223000 14403000 30821000 15867000 25354000 1561200 40588000 14042000 12480000 14200000 17716000 18793000 14211000 29342000 3 3 2 3 3 3 3 3 3 3 3 1233300000 773670000 459660000 19051 462 17499 97252;97253;97254 117820;117821;117822;117823;117824;117825 117820 6 TLHQIFEK Unmodified 1014.5498 0.54983053 1184 P52732 KIF11 Kinesin-like protein KIF11 yes yes 0 0 0 0 By MS/MS 7 0 1 1 43.599 44.148 3 0.00073633 13438 20211116_3446_TMUAki_TMT10x_S_F7 124.74 60.259 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19052 1184 17500 97255 117826 117826 1 TLHSDDEGTVLDDSR Unmodified 1658.7384 0.73837217 66 O00170 AIP AH receptor-interacting protein yes yes 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 34.326 34.248 3 1.1904E-33 9630 20211116_3439_TMUAki_TMT10x_S_F1 224.13 211.57 893950 1436500 37641 1811400 2586300 2110400 1249100 1235400 1457400 1078800 1501600 832540 1341800 120150 1825900 2447700 2111800 1343400 1295600 1475100 1060000 1447200 3 3 2 3 3 3 3 3 3 3 3 747660 1191800 33603 1473400 2433000 1957700 1097700 989940 1139300 878270 1193800 696290 1113100 104160 1490500 2300500 1942800 1184500 1052000 1159200 862360 1149900 2 2 1 2 2 2 2 2 2 2 2 146300 244730 4037.8 338010 153340 152610 151380 245500 318100 200520 307830 136250 228710 15991 335470 147230 169000 158810 243580 315950 197690 297270 1 1 1 1 1 1 1 1 1 1 1 197800000 153060000 44740000 19053 66 17501 97256;97257;97258 117827;117828;117829 117829 3 TLHYECIVLVK Unmodified 1373.7377 0.73770765 3157 Q9UKK9 NUDT5 ADP-sugar pyrophosphatase yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 55.651 55.985 3 1.2084E-05 18236 20211116_3446_TMUAki_TMT10x_S_F7 103.08 81.055 22294000 37331000 456400 39297000 30447000 36244000 26690000 33587000 33730000 33408000 32018000 20761000 34841000 2387900 39905000 29127000 37051000 27487000 34277000 33945000 32636000 30939000 5 5 5 5 5 5 5 5 5 5 5 9943400 16174000 182310 17069000 16126000 22880000 13411000 15013000 15467000 15648000 13564000 9259600 15095000 1080900 17437000 15405000 22774000 13809000 15680000 15578000 15256000 13144000 2 2 2 2 2 2 2 2 2 2 2 12351000 21157000 274090 22228000 14320000 13363000 13279000 18574000 18262000 17761000 18453000 11502000 19746000 1307000 22468000 13722000 14278000 13678000 18597000 18368000 17380000 17795000 3 3 3 3 3 3 3 3 3 3 3 3538900000 2068700000 1470200000 19054 3157 17502 97259;97260;97261;97262 117830;117831;117832;117833;117834 117832 5 TLIDDDNPPVSFVK Unmodified 1558.7879 0.78788854 1326 P61964 WDR5 WD repeat-containing protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 68.176 68.241 2;3 0.0091407 21047 20211116_3444_TMUAki_TMT10x_S_F5 65.172 42.293 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19055 1326 17503 97263;97264 117835;117836 117836 2 TLIEAGLPQK Unmodified 1068.6179 0.61791009 211 O43390;O43390-2;O43390-3 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 0 By MS/MS By MS/MS 7 0 3 1 2 54.103 54.724 2 4.4678E-07 17799 20211116_3446_TMUAki_TMT10x_S_F7 111.61 82.52 4301400 7559500 128160 8776600 9840100 11883000 6901300 6847400 6916800 6930300 7186600 4006000 7058300 553630 8914100 9369000 11800000 7154400 7218500 7045500 6765000 6924300 1 1 1 1 1 1 1 1 1 1 1 4301400 7559500 128160 8776600 9840100 11883000 6901300 6847400 6916800 6930300 7186600 4006000 7058300 553630 8914100 9369000 11800000 7154400 7218500 7045500 6765000 6924300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 847370000 580370000 267000000 19056 211 17504 97265;97266;97267 117837;117838 117838 2 TLIGFLR Unmodified 818.50142 0.50142377 162 O15116 LSM1 U6 snRNA-associated Sm-like protein LSm1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 63.773 63.556 2 0.008754 21666 20211116_3430_TMUAki_TMT10x_P_F3 101.21 29.834 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19057 162 17505 97268;97269 117839;117840 117839 2 TLIGHVPDQR Unmodified 1134.6146 0.61455605 1865 Q16822;Q16822-2;Q16822-3 PCK2 Phosphoenolpyruvate carboxykinase [GTP], mitochondrial yes no 0 0 0 0 By MS/MS 5 0 2 2 29.082 29.18 3 0.055492 5579 20211116_3444_TMUAki_TMT10x_S_F5 47.844 33.326 29977 47900 0 52021 33920 42725 37456 19329 20388 28598 34120 27910 44711 2375.2 52640 32602 43573 37280 21111 21975 27549 32489 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29977 47900 0 52021 33920 42725 37456 19329 20388 28598 34120 27910 44711 2375.2 52640 32602 43573 37280 21111 21975 27549 32489 1 1 0 1 1 1 1 1 1 1 1 709650 0 709650 19058 1865 17506 97270;97271 117841;117842 117842 2 TLIHLFR Unmodified 898.53887 0.53887191 2980 Q9NVU7;Q9NVU7-2 SDAD1 Protein SDA1 homolog yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 49.282 49.361 3 0.0022677 14537 20211116_3442_TMUAki_TMT10x_S_F4 105.2 62.2 3248600 5533400 111390 5557700 6001500 10653000 2381100 3547600 4438800 5689600 3925900 3025100 5163300 340430 5744300 5665600 10379000 2668300 4029700 4407400 5468500 3803000 2 2 1 2 2 2 2 2 2 2 2 2776900 4383200 0 4664600 5472900 7213800 1854900 2820500 3375400 3714400 3250300 2585000 4091100 196710 4776900 5152000 7093000 2117800 3116200 3362900 3590800 3139300 1 1 0 1 1 1 1 1 1 1 1 471710 1150100 111390 893130 528660 3439300 526170 727090 1063400 1975200 675590 440040 1072200 143720 967360 513590 3285700 550480 913500 1044500 1877700 663720 1 1 1 1 1 1 1 1 1 1 1 286580000 165030000 121540000 19059 2980 17507 97272;97273;97274 117843;117844 117844 2 TLIQNCGASTIR Unmodified 1332.682 0.68198369 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 By MS/MS By MS/MS 5.23 2.91 4 3 2 4 8 5 37.942 38.114 2;3 2.4516E-30 8568 20211116_3434_TMUAki_TMT10x_P_F6 262.07 209.35 11173000 16728000 68978 19662000 23305000 16884000 11901000 10119000 11404000 8963600 13435000 10402000 15620000 995510 19809000 22053000 17220000 12652000 10595000 11695000 8801900 12898000 15 15 5 15 15 15 15 15 15 15 15 8282300 12169000 68978 14564000 20495000 14838000 9215100 7330700 8479800 6655100 9764100 7711200 11364000 808250 14692000 19365000 14930000 9914400 7812000 8704500 6527600 9379300 9 9 5 9 9 9 9 9 9 9 9 2890400 4559400 0 5098000 2809900 2046200 2685700 2788300 2924200 2308400 3671300 2690900 4256400 187260 5117100 2688400 2289400 2738100 2783100 2991000 2274300 3518400 6 6 0 6 6 6 6 6 6 6 6 2288500000 1437500000 850930000 19060 1094 17508 97275;97276;97277;97278;97279;97280;97281;97282;97283;97284;97285;97286;97287 117845;117846;117847;117848;117849;117850;117851;117852;117853;117854;117855;117856;117857;117858;117859 117847 15 TLIVEPHVIPNR Unmodified 1386.7983 0.79833407 263 O60306 AQR Intron-binding protein aquarius yes yes 0 0 0 0 By MS/MS 6 0 1 1 45.576 45.741 3 0.03091 12062 20211116_3445_TMUAki_TMT10x_S_F6 51.569 36.03 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19061 263 17509 97288 117860 117860 1 TLIVTHSNQALNQLFEK Unmodified 1955.0476 0.04762548 263 O60306 AQR Intron-binding protein aquarius yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 65.214 64.945 3 1.4726E-15 21691 20211116_3429_TMUAki_TMT10x_P_F2 149 128.05 30257000 51558000 370250 44550000 35238000 44951000 35870000 33768000 31568000 33208000 39362000 28175000 48083000 2923300 45949000 33826000 45517000 36219000 34881000 32579000 32456000 37729000 5 5 5 5 5 5 5 5 5 5 5 15069000 23281000 214620 20528000 16163000 28773000 19130000 14960000 14649000 14945000 18073000 14032000 21713000 1464600 21259000 15585000 28493000 19111000 15907000 15221000 14597000 17328000 2 2 2 2 2 2 2 2 2 2 2 15188000 28278000 155640 24022000 19075000 16178000 16740000 18808000 16918000 18263000 21289000 14143000 26370000 1458700 24689000 18241000 17024000 17108000 18974000 17359000 17859000 20401000 3 3 3 3 3 3 3 3 3 3 3 1721700000 1046800000 674970000 19062 263 17510 97289;97290 117861;117862;117863;117864;117865 117861 5 TLLADKGEIR Unmodified 1114.6346 0.63462279 1621 Q13330;Q13330-3;Q9BTC8;Q9BTC8-2;Q13330-2 MTA1;MTA3 Metastasis-associated protein MTA1;Metastasis-associated protein MTA3 yes no 0 0 0 1 By MS/MS 6 0 1 1 41.121 41.15 3 8.1709E-05 9913 20211116_3434_TMUAki_TMT10x_P_F6 89.032 45.54 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19063 1621 17511 97291 117866 117866 1 TLLADQGEIR Unmodified 1114.5982 0.59823728 384 O94776 MTA2 Metastasis-associated protein MTA2 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 43.193 43.201 2 4.8438E-05 11985 20211116_3442_TMUAki_TMT10x_S_F4 132.88 90.04 8184500 13157000 50811 16423000 15492000 12908000 8881200 10013000 11396000 8934700 12178000 7620500 12289000 765010 16471000 14687000 13301000 9432100 10295000 11511000 8770600 11724000 5 5 4 5 5 5 5 5 5 5 5 4250500 6946300 42842 8823600 12142000 10081000 5768400 5139400 6047000 4811900 6553000 3958000 6488700 502850 8887800 11484000 10081000 6193000 5464900 6157500 4713000 6305800 2 2 2 2 2 2 2 2 2 2 2 3934000 6210300 7969.2 7599600 3350500 2826700 3112800 4874000 5348700 4122900 5625200 3662500 5800100 262160 7583300 3203000 3220100 3239100 4829800 5353400 4057600 5417900 3 3 2 3 3 3 3 3 3 3 3 659390000 344600000 314790000 19064 384 17512 97292;97293;97294;97295;97296;97297 117867;117868;117869;117870;117871;117872 117872 6 TLLAILR Unmodified 798.53272 0.5327239 913 P33993;P33993-3 MCM7 DNA replication licensing factor MCM7 yes no 0 0 0 0 By MS/MS 4 0 1 1 64.512 64.611 2 0.013631 20372 20211116_3431_TMUAki_TMT10x_P_F4 94.777 7.9389 2235200 3740100 15288 3240100 3399200 5775500 2771500 3537400 3522200 2981300 3149500 2081300 3488100 215860 3378600 3244500 5677000 2867300 3692900 3537200 2934600 3049700 1 1 1 1 1 1 1 1 1 1 1 2235200 3740100 15288 3240100 3399200 5775500 2771500 3537400 3522200 2981300 3149500 2081300 3488100 215860 3378600 3244500 5677000 2867300 3692900 3537200 2934600 3049700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 209160000 209160000 0 19065 913 17513 97298 117873 117873 1 TLLDILADGTILK Unmodified 1384.8177 0.81773211 2969 Q9NVH0;Q9NVH0-2 EXD2 Exonuclease 3'-5' domain-containing protein 2 yes no 0 0 0 0 By MS/MS 8 0 1 1 81.977 81.982 3 6.352E-06 27203 20211116_3436_TMUAki_TMT10x_P_F8 96.059 72.823 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19066 2969 17514 97299 117874 117874 1 TLLDPGR Unmodified 770.42865 0.42865276 111 O14497;O14497-3;O14497-2 ARID1A AT-rich interactive domain-containing protein 1A yes no 0 0 0 0 By MS/MS 4 0 1 1 37.624 37.782 2 0.024338 9862 20211116_3442_TMUAki_TMT10x_S_F4 83.377 25.131 261740 384770 296.35 403300 257190 248990 273220 300940 296850 297220 359660 243710 359100 21913 407820 247030 264340 277030 303240 303190 290440 345010 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 261740 384770 296.35 403300 257190 248990 273220 300940 296850 297220 359660 243710 359100 21913 407820 247030 264340 277030 303240 303190 290440 345010 1 1 1 1 1 1 1 1 1 1 1 20197000 0 20197000 19067 111 17515 97300 117875 117875 1 TLLDQHGQYPIWMNQR Oxidation (M) 2014.9683 0.9683293 2643 Q9BRT6 LLPH Protein LLP homolog yes yes 0 0 1 0 By MS/MS 8 0 1 1 53.171 53.09 3 0.010388 14903 20211116_3447_TMUAki_TMT10x_S_F8 50.077 37.517 1886700 3503400 0 3150200 2115000 1884600 1758300 2186700 2003400 1967400 2607700 1756500 3267700 130230 3219800 2017100 2004800 1809700 2201400 2048800 1930500 2496800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1886700 3503400 0 3150200 2115000 1884600 1758300 2186700 2003400 1967400 2607700 1756500 3267700 130230 3219800 2017100 2004800 1809700 2201400 2048800 1930500 2496800 1 1 0 1 1 1 1 1 1 1 1 627220000 0 627220000 19068 2643 17516 97301 117876 117876 2877 1 TLLEAENSR Unmodified 1031.5247 0.52473799 1080 P48681 NES Nestin yes yes 0 0 0 0 By MS/MS 2 0 1 1 36.573 36.342 2 0.0046975 10028 20211116_3429_TMUAki_TMT10x_P_F2 75.294 43.922 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19069 1080 17517 97302 117877 117877 1 TLLEEEYFR Unmodified 1198.587 0.58700389 1183 P52701;P52701-3;P52701-4;P52701-2 MSH6 DNA mismatch repair protein Msh6 yes no 0 0 0 0 By MS/MS By MS/MS 2.75 1.09 1 3 1 3 4 4 60.366 60.262 2 0.00017105 19747 20211116_3429_TMUAki_TMT10x_P_F2 100.09 77.355 30614000 50790000 529060 49721000 38193000 49120000 35653000 45065000 40246000 40084000 43548000 28508000 47389000 3130400 50790000 36589000 49986000 36440000 45875000 40860000 39354000 41907000 5 5 4 5 5 5 5 5 5 5 5 12638000 19666000 296340 19936000 18032000 31241000 17002000 22863000 19378000 19294000 19060000 11770000 18351000 1399500 20488000 17282000 30940000 17373000 23561000 19598000 18991000 18397000 2 2 2 2 2 2 2 2 2 2 2 17975000 31125000 232720 29785000 20161000 17879000 18652000 22203000 20868000 20790000 24488000 16739000 29038000 1730900 30302000 19307000 19046000 19067000 22314000 21261000 20363000 23511000 3 3 2 3 3 3 3 3 3 3 3 2145800000 1008500000 1137300000 19070 1183 17518 97303;97304;97305;97306;97307;97308;97309;97310 117878;117879;117880;117881;117882;117883;117884;117885;117886 117879 9 TLLEFLKR Unmodified 1018.6175 0.61751616 1696 Q14232;Q14232-2 EIF2B1 Translation initiation factor eIF-2B subunit alpha yes no 0 0 0 1 By MS/MS By matching 4 0 2 1 1 64.634 64.605 3 0.00099848 20359 20211116_3431_TMUAki_TMT10x_P_F4 117.81 32.65 1627900 2475100 10118 2715600 2534700 3933300 2300700 1789800 3046700 2851900 2281900 1515800 2310400 157090 2771500 2425100 3883700 2369000 1959700 3039800 2741500 2225000 1 1 1 1 1 1 1 1 1 1 1 1627900 2475100 10118 2715600 2534700 3933300 2300700 1789800 3046700 2851900 2281900 1515800 2310400 157090 2771500 2425100 3883700 2369000 1959700 3039800 2741500 2225000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 520930000 301630000 219300000 19071 1696 17519 97311;97312 117887 117887 1 TLLENTAITIGR Unmodified 1300.7351 0.73506511 2381;134 Q92973;Q92973-2;Q92973-3;O14787-2 TNPO1;TNPO2 Transportin-1;Transportin-2 no no 0 0 0 0 By MS/MS By MS/MS 6.29 1.03 2 2 2 1 4 3 59.538 59.836 2 3.2473E-19 17835 20211116_3445_TMUAki_TMT10x_S_F6 221.32 179.12 40025000 66830000 298010 64190000 52340000 69947000 48324000 61512000 57357000 56740000 57833000 37266000 62350000 3276100 65757000 50071000 70713000 49507000 62824000 57973000 55612000 55774000 6 6 4 6 6 6 6 6 6 6 6 21344000 33189000 12397 33000000 29696000 49258000 29134000 30818000 28824000 28664000 28808000 19870000 30968000 1405700 33922000 28429000 48764000 29572000 32200000 29336000 28083000 27790000 3 3 1 3 3 3 3 3 3 3 3 18681000 33642000 285610 31189000 22644000 20688000 19190000 30694000 28533000 28076000 29025000 17396000 31382000 1870500 31835000 21642000 21949000 19935000 30624000 28636000 27529000 27984000 3 3 3 3 3 3 3 3 3 3 3 5887900000 3382400000 2505500000 19072 2381;134 17520 97313;97314;97315;97316;97317;97318;97319 117888;117889;117890;117891;117892;117893;117894;117895 117893 8 TLLEQLDDDQ Unmodified 1188.551 0.55101232 332 O75400;O75400-2;O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 71.309 71.161 2 0.0010661 24622 20211116_3439_TMUAki_TMT10x_S_F1 95.358 83.453 8846800 14070000 37621 15169000 9072600 7489700 9222100 7059200 6588100 7868700 10376000 8237100 13133000 719770 15282000 8701900 8094000 9265100 7223300 6951900 7651600 9891700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8846800 14070000 37621 15169000 9072600 7489700 9222100 7059200 6588100 7868700 10376000 8237100 13133000 719770 15282000 8701900 8094000 9265100 7223300 6951900 7651600 9891700 2 2 1 2 2 2 2 2 2 2 2 435570000 0 435570000 19073 332 17521 97320;97321 117896;117897;117898 117897 3 TLLESERER Unmodified 1131.5884 0.58840088 358 O75792 RNASEH2A Ribonuclease H2 subunit A yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 30.51 30.269 3 0.00027984 7643 20211116_3429_TMUAki_TMT10x_P_F2 119.53 96.156 872130 1447200 8292.3 1304900 1185600 1278500 930810 791990 803190 752930 1044200 812100 1349900 84424 1340900 1130900 1293200 953530 828620 831250 736960 999840 2 2 2 2 2 2 2 2 2 2 2 459430 742060 2299 671680 620210 935240 487370 426740 452880 398300 541810 427800 692160 42485 694140 591490 925070 500240 458690 465400 390170 519920 1 1 1 1 1 1 1 1 1 1 1 412700 705140 5993.3 633260 565380 343280 443430 365250 350310 354640 502390 384300 657700 41939 646770 539410 368090 453290 369940 365850 346790 479930 1 1 1 1 1 1 1 1 1 1 1 45752000 22478000 23274000 19074 358 17522 97322;97323 117899;117900 117899 2 TLLGAESHLR Unmodified 1095.6037 0.60365701 2042 Q71F23;Q71F23-2 CENPU Centromere protein U yes no 0 0 0 0 By MS/MS 5 0 1 1 35.722 35.897 3 1.539E-07 7868 20211116_3444_TMUAki_TMT10x_S_F5 111.73 75.4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19075 2042 17523 97324 117901 117901 1 TLLISTLHR Unmodified 1052.6342 0.63422886 1542 Q07954 LRP1 Prolow-density lipoprotein receptor-related protein 1;Low-density lipoprotein receptor-related protein 1 85 kDa subunit;Low-density lipoprotein receptor-related protein 1 515 kDa subunit;Low-density lipoprotein receptor-related protein 1 intracellular domain yes yes 0 0 0 0 By MS/MS By matching 2.5 0.5 1 1 1 1 28.755 28.501 3 0.078555 6938 20211116_3429_TMUAki_TMT10x_P_F2 34.387 8.4926 342060 558100 8687.8 459200 479110 613990 426030 339370 351490 314750 409570 318550 520390 38375 477760 458580 609770 432610 358170 362910 308420 393300 1 1 1 1 1 1 1 1 1 1 1 342060 558100 8687.8 459200 479110 613990 426030 339370 351490 314750 409570 318550 520390 38375 477760 458580 609770 432610 358170 362910 308420 393300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23499000 9659800 13839000 19076 1542 17524 97325;97326 117902 117902 1 TLLLCGYPNVGK Unmodified 1333.7064 0.70640752 2735 Q9BZE4;Q9BZE4-3;Q9BZE4-2 GTPBP4 Nucleolar GTP-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 2 4 4 2 65.038 64.678 2;3 2.1712E-19 22060 20211116_3430_TMUAki_TMT10x_P_F3 226.9 179.7 48398000 81968000 448260 81818000 60287000 80213000 55709000 53753000 49485000 54325000 59903000 45064000 76485000 4312300 83454000 57699000 81220000 56555000 56004000 50984000 53033000 57464000 8 8 4 8 8 8 8 8 8 8 8 32042000 54100000 419470 54536000 44061000 65608000 41709000 35374000 33172000 36415000 39586000 29836000 50483000 3090300 55770000 42206000 65474000 42166000 37523000 34348000 35522000 37989000 5 5 3 5 5 5 5 5 5 5 5 16356000 27868000 28790 27282000 16226000 14605000 14000000 18378000 16313000 17911000 20317000 15228000 26002000 1222000 27684000 15493000 15746000 14389000 18481000 16636000 17512000 19475000 3 3 1 3 3 3 3 3 3 3 3 4359700000 2433000000 1926700000 19077 2735 17525 97327;97328;97329;97330;97331;97332 117903;117904;117905;117906;117907;117908;117909;117910;117911 117905 9 TLLLDGNPFR Unmodified 1144.6241 0.6240581 2839 Q9H9A6 LRRC40 Leucine-rich repeat-containing protein 40 yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 67.518 67.449 2 1.0386E-05 23255 20211116_3439_TMUAki_TMT10x_S_F1 139.98 103.14 16295000 27478000 39694 24075000 17007000 20913000 17364000 16768000 16180000 17817000 20126000 15172000 25627000 1331800 24753000 16315000 21407000 17558000 17289000 16652000 17358000 19293000 3 3 2 3 3 3 3 3 3 3 3 6249600 9949700 0 9159800 5981500 10611000 6811800 5873200 5875900 6442500 7336000 5818400 9281100 448250 9422000 5751900 10614000 6837100 6227600 6070400 6268600 7031600 1 1 0 1 1 1 1 1 1 1 1 10045000 17528000 39694 14915000 11026000 10302000 10553000 10894000 10304000 11375000 12790000 9353500 16346000 883560 15331000 10563000 10793000 10721000 11061000 10581000 11090000 12261000 2 2 2 2 2 2 2 2 2 2 2 1330300000 626560000 703770000 19078 2839 17526 97333;97334;97335 117912;117913;117914 117913 3 TLLLDGNPFRVPR Unmodified 1496.8463 0.8463469 2839 Q9H9A6 LRRC40 Leucine-rich repeat-containing protein 40 yes yes 0 0 0 1 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 62.819 62.801 3 1.4567E-06 20165 20211116_3442_TMUAki_TMT10x_S_F4 116.63 74.951 7299400 11718000 12831 11046000 8993300 10122000 7963400 7079300 7056400 6836000 8632000 6796200 10932000 591500 11302000 8594900 10301000 8103400 7344000 7274200 6686500 8278200 2 2 1 2 2 2 2 2 2 2 2 4155000 6264100 0 5822000 5150600 6901800 4624100 3655600 3653200 3572800 4559400 3868300 5843500 309070 5986800 4922200 6891500 4687900 3878100 3791100 3492800 4370200 1 1 0 1 1 1 1 1 1 1 1 3144400 5453800 12831 5224000 3842700 3220500 3339400 3423700 3403200 3263200 4072700 2927900 5088200 282430 5315700 3672600 3409000 3415500 3465900 3483100 3193600 3908000 1 1 1 1 1 1 1 1 1 1 1 1168000000 425360000 742590000 19079 2839 17527 97336;97337;97338 117915;117916;117917 117916 3 TLLPHDPTADVFVTPAEEKPIEIQWVKPEPK Unmodified 3523.8603 0.86027221 2280 Q8TDN6 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 0 0 0 2 By MS/MS By MS/MS 7.11 0.875 3 2 4 4 5 75.222 75.212 5;6 7.6579E-27 24393 20211116_3436_TMUAki_TMT10x_P_F8 144.23 140.42 43132000 70790000 251890 68309000 51611000 56498000 57525000 28444000 23915000 33319000 49670000 40161000 66045000 3704800 69685000 49637000 57655000 57000000 30482000 26714000 32341000 47118000 11 11 5 11 11 11 11 11 11 11 11 20804000 33105000 198060 32278000 22453000 35175000 27771000 13893000 11174000 15774000 22471000 19372000 30887000 1889700 33031000 21672000 35177000 27378000 15256000 12494000 15328000 21327000 5 5 3 5 5 5 5 5 5 5 5 22328000 37685000 53829 36030000 29158000 21323000 29753000 14551000 12741000 17545000 27199000 20789000 35158000 1815100 36654000 27965000 22477000 29622000 15226000 14220000 17012000 25790000 6 6 2 6 6 6 6 6 6 6 6 9652100000 4862400000 4789800000 19080 2280 17528 97339;97340;97341;97342;97343;97344;97345;97346;97347 117918;117919;117920;117921;117922;117923;117924;117925;117926;117927;117928 117921 11 TLLPLLLESSTESVAEISSNSLER Unmodified 2587.3592 0.35924237 1939 Q5T4S7;Q5T4S7-3;Q5T4S7-4;Q5T4S7-2;Q5T4S7-5 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 0 0 By MS/MS By MS/MS 4.88 1.27 1 3 1 2 1 4 4 81.832 81.829 3 2.4965E-22 27850 20211116_3442_TMUAki_TMT10x_S_F4 141.69 125 4199500 7035600 16765 6584700 5100900 5519800 5355000 3964100 3692900 4042700 5458700 3909800 6563200 249470 6733400 4894700 5654000 5367100 4111300 3892300 3945000 5211100 7 7 1 7 7 7 7 7 7 7 7 1494200 2381100 0 2372700 1538300 2724000 1717300 1457800 1475600 1614800 1961900 1391100 2221800 103430 2426400 1478100 2724900 1725100 1550800 1529000 1570600 1877500 3 3 0 3 3 3 3 3 3 3 3 2705300 4654500 16765 4212000 3562600 2795800 3637700 2506300 2217300 2427800 3496800 2518800 4341500 146040 4307000 3416600 2929000 3642000 2560500 2363300 2374400 3333700 4 4 1 4 4 4 4 4 4 4 4 1215100000 434510000 780560000 19081 1939 17529 97348;97349;97350;97351;97352;97353;97354;97355 117929;117930;117931;117932;117933;117934;117935;117936 117933 8 TLLSDPTYR Unmodified 1064.5502 0.55022446 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 1.5 1 2 2 2 2 1 5 5 43.756 43.926 2 1.8723E-06 11962 20211116_3431_TMUAki_TMT10x_P_F4 194.22 135.24 35506000 54622000 243050 72418000 70254000 63289000 41146000 47929000 59147000 43882000 55594000 33058000 51034000 3225200 72485000 66618000 64693000 43816000 49385000 59258000 43024000 53739000 14 14 8 14 14 14 14 14 14 14 14 18991000 28469000 173900 37361000 58907000 50312000 27770000 25049000 31473000 23045000 28549000 17681000 26598000 1959800 37680000 55688000 49888000 29911000 26683000 31753000 22589000 27631000 7 7 5 7 7 7 7 7 7 7 7 16515000 26152000 69147 35057000 11347000 12977000 13376000 22881000 27673000 20837000 27044000 15377000 24436000 1265300 34804000 10929000 14805000 13904000 22703000 27505000 20435000 26108000 7 7 3 7 7 7 7 7 7 7 7 5130400000 2564900000 2565500000 19082 897 17530 97356;97357;97358;97359;97360;97361;97362;97363;97364;97365 117937;117938;117939;117940;117941;117942;117943;117944;117945;117946;117947;117948;117949;117950;117951;117952 117940 16 TLLSDPTYRELIEQLR Unmodified 1946.0473 0.047291129 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 1 By MS/MS By MS/MS 6.67 1.05 2 1 4 2 5 4 76.194 76.229 2;3 1.2443E-42 24863 20211116_3436_TMUAki_TMT10x_P_F8 222.57 182.46 79136000 116650000 290130 108660000 93907000 125790000 87550000 99139000 88187000 87030000 100260000 73679000 108810000 5394500 111670000 89851000 126500000 89158000 101780000 90116000 85497000 96345000 10 10 4 10 10 10 10 10 10 10 10 53245000 76345000 161260 69542000 46058000 94929000 54074000 66120000 57383000 55391000 65452000 49575000 71212000 3343200 71804000 44359000 94494000 54533000 68359000 58519000 54540000 62889000 5 5 1 5 5 5 5 5 5 5 5 25891000 40302000 128860 39122000 47849000 30866000 33476000 33020000 30805000 31639000 34810000 24104000 37602000 2051300 39870000 45493000 32002000 34625000 33422000 31598000 30957000 33456000 5 5 3 5 5 5 5 5 5 5 5 21911000000 9688900000 12223000000 19083 897 17531 97366;97367;97368;97369;97370;97371;97372;97373;97374 117953;117954;117955;117956;117957;117958;117959;117960;117961;117962 117957 10 TLLSLCGAEK Unmodified 1090.5692 0.56924534 3213 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 yes yes 0 0 0 0 By MS/MS 8 0 1 1 33.043 33.619 3 0.1036 6852 20211116_3447_TMUAki_TMT10x_S_F8 36.525 11.308 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19084 3213 17532 97375 117963 117963 1 TLLSVPGYK Unmodified 976.55933 0.55933258 820 P26640;P26640-2 VARS Valine--tRNA ligase yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 58.04 57.913 2 2.6657E-05 17546 20211116_3440_TMUAki_TMT10x_S_F2 136.8 83.627 20419000 30731000 12973 37140000 42007000 47230000 27446000 23654000 24272000 22536000 25989000 19012000 28699000 1975200 37587000 39911000 46963000 28503000 25206000 24893000 22056000 25017000 3 3 1 3 3 3 3 3 3 3 3 20419000 30731000 12973 37140000 42007000 47230000 27446000 23654000 24272000 22536000 25989000 19012000 28699000 1975200 37587000 39911000 46963000 28503000 25206000 24893000 22056000 25017000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1240800000 1240800000 0 19085 820 17533 97376;97377;97378;97379 117964;117965;117966;117967;117968 117968 5 TLLVADPR Unmodified 883.51272 0.51271674 1340 P62249 RPS16 40S ribosomal protein S16 yes yes 0 0 0 0 By MS/MS By MS/MS 4.78 1.31 2 2 2 2 1 4 5 42.61 42.725 2 0.0026219 10728 20211116_3445_TMUAki_TMT10x_S_F6 107.32 40.635 25562000 41829000 297620 45661000 37033000 35019000 26353000 30979000 29480000 28167000 35220000 23802000 39045000 2440800 46152000 35251000 36240000 27386000 31617000 30057000 27625000 33797000 11 11 6 11 11 11 11 11 11 11 11 10459000 16080000 7767.9 17674000 21514000 21476000 12386000 11577000 11122000 10854000 14021000 9737200 15010000 934770 17975000 20393000 21421000 13002000 12249000 11473000 10631000 13436000 4 4 1 4 4 4 4 4 4 4 4 15103000 25749000 289850 27986000 15519000 13543000 13967000 19402000 18358000 17312000 21198000 14065000 24035000 1506000 28177000 14858000 14819000 14385000 19368000 18585000 16994000 20361000 7 7 5 7 7 7 7 7 7 7 7 4051500000 2409800000 1641700000 19086 1340 17534 97380;97381;97382;97383;97384;97385;97386;97387;97388 117969;117970;117971;117972;117973;117974;117975;117976;117977;117978;117979 117977 11 TLLVADPRR Unmodified 1039.6138 0.61382777 1340 P62249 RPS16 40S ribosomal protein S16 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 35.589 35.572 3 0.00025721 8184 20211116_3428_TMUAki_TMT10x_P_F1 121.73 88.47 766840 1298100 5962.4 1349800 1324600 1170800 903120 1154600 1064900 889760 1149100 714050 1211400 76946 1370700 1259900 1203400 943120 1166800 1079300 879900 1105900 2 2 2 2 2 2 2 2 2 2 2 370150 601450 2365.6 645040 809100 836600 486740 548690 521570 433330 546010 344660 561380 39040 657830 767840 833980 511650 568950 529950 427970 525960 1 1 1 1 1 1 1 1 1 1 1 396690 696620 3596.8 704780 515550 334240 416390 605880 543360 456430 603080 369390 650050 37905 712880 492060 369470 431470 597840 549340 451930 579920 1 1 1 1 1 1 1 1 1 1 1 152910000 82554000 70361000 19087 1340 17535 97389;97390 117980;117981 117980 2 TLLVHRK Unmodified 865.54977 0.54977095 3285 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog yes yes 0 0 0 1 By MS/MS 4 0 1 1 29.143 29.187 3 0.071795 6048 20211116_3431_TMUAki_TMT10x_P_F4 48.346 18.121 351480 511390 264.1 450270 456570 656100 411500 345740 368260 350300 453570 327270 476950 30858 466750 436660 648720 418420 367320 379570 341930 434900 1 1 1 1 1 1 1 1 1 1 1 351480 511390 264.1 450270 456570 656100 411500 345740 368260 350300 453570 327270 476950 30858 466750 436660 648720 418420 367320 379570 341930 434900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6380300 6380300 0 19088 3285 17536 97391 117982 117982 1 TLLYNPFPPTNESDVIR Unmodified 1975.0051 0.005091963 2401 Q969X6;Q969X6-2 CIRH1A Cirhin yes no 0 0 0 0 By MS/MS 7 0 1 1 74.111 74.249 2 1.1283E-06 25853 20211116_3446_TMUAki_TMT10x_S_F7 102.33 61.835 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19089 2401 17537 97392 117983 117983 1 TLMELLNQMDGFDTLHR Unmodified 2032.971 0.97103142 1357 P62333 PSMC6 26S protease regulatory subunit 10B yes yes 0 0 0 0 By MS/MS 6 0 1 1 80.324 80.312 3 0.095876 25858 20211116_3434_TMUAki_TMT10x_P_F6 30.428 18.814 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19090 1357 17538 97393 117984 117984 1 TLMGALK Oxidation (M) 748.41531 0.41531088 2278 Q8TD57;Q8TD57-3 DNAH3 Dynein heavy chain 3, axonemal yes no 0 0 1 0 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 54.044 54.261 2 0.10807 16332 20211116_3433_TMUAki_TMT10x_P_F5 60.151 13.585 62134000 91583000 25175 99340000 79535000 70929000 62089000 55822000 53141000 55516000 73100000 57848000 85486000 4802500 100370000 75784000 73670000 63615000 57509000 55162000 54232000 69899000 5 5 1 5 5 5 5 5 5 5 5 25901000 36219000 0 39379000 45773000 41268000 26880000 22146000 21116000 22538000 29026000 24114000 33808000 2174000 39978000 43398000 41495000 28075000 23494000 22015000 21995000 27756000 2 2 0 2 2 2 2 2 2 2 2 36233000 55363000 25175 59961000 33761000 29660000 35210000 33675000 32025000 32978000 44074000 33734000 51677000 2628600 60392000 32386000 32175000 35540000 34015000 33147000 32237000 42143000 3 3 1 3 3 3 3 3 3 3 3 3164600000 1510300000 1654300000 19091 2278 17539 97394;97395;97396;97397;97398 117985;117986;117987 117985 2653 3 TLMNLGGLAVAR Oxidation (M) 1230.6754 0.67544174 965 P37802;P37802-2 TAGLN2 Transgelin-2 yes no 0 0 1 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 53.93 53.782 2 4.7382E-08 17629 20211116_3439_TMUAki_TMT10x_S_F1 123.38 104.85 10686000 17712000 15451 16179000 15950000 23335000 12593000 19784000 20933000 15752000 16559000 9949500 16522000 945860 16720000 15209000 23251000 13207000 20174000 20775000 15551000 16109000 4 4 1 4 4 4 4 4 4 4 4 7653500 12454000 0 11764000 12663000 20352000 10173000 13727000 14693000 11282000 12062000 7126000 11618000 676480 12178000 12077000 20054000 10589000 14218000 14656000 11119000 11717000 3 3 0 3 3 3 3 3 3 3 3 3032400 5258600 15451 4414800 3287800 2983700 2420100 6057200 6240100 4470400 4497400 2823600 4903700 269380 4542000 3131600 3196900 2618400 5956000 6119200 4431400 4392400 1 1 1 1 1 1 1 1 1 1 1 1667700000 1188300000 479430000 19092 965 17540 97399;97400;97401;97402 117988;117989;117990;117991;117992 117991 1221 5 TLMNLGGLAVAR Unmodified 1214.6805 0.68052712 965 P37802;P37802-2 TAGLN2 Transgelin-2 yes no 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 2 3 64.744 64.542 2 4.5688E-17 20325 20211116_3431_TMUAki_TMT10x_P_F4 215.72 176.96 23010000 37706000 159750 37848000 28102000 29395000 26072000 18111000 14835000 17921000 26713000 21426000 35184000 2058800 38475000 26899000 30213000 26205000 18977000 16006000 17510000 25401000 4 4 2 4 4 4 4 4 4 4 4 11339000 17598000 33848 18677000 14311000 19294000 14562000 8902100 7020500 8667600 13033000 10558000 16425000 976970 18987000 13728000 19384000 14524000 9568500 7685500 8474900 12386000 2 2 1 2 2 2 2 2 2 2 2 11671000 20108000 125900 19171000 13790000 10100000 11511000 9208600 7814900 9253100 13680000 10868000 18760000 1081800 19488000 13171000 10829000 11680000 9409000 8320100 9035200 13015000 2 2 1 2 2 2 2 2 2 2 2 2490100000 1238500000 1251600000 19093 965 17540 97403;97404;97405;97406;97407 117993;117994;117995;117996;117997 117994 5 TLNAHEHFVTSLDFHK Unmodified 1894.9326 0.93259572 1025 P43034 PAFAH1B1 Platelet-activating factor acetylhydrolase IB subunit alpha yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.632 1 3 1 2 3 44.996 45.31 4;5 1.1598E-10 13947 20211116_3446_TMUAki_TMT10x_S_F7 129.88 108.24 9138000 14960000 153870 16142000 13756000 15676000 9110300 11207000 10019000 11142000 11794000 8509300 13964000 931620 16377000 13080000 15898000 9512000 11618000 10216000 10884000 11322000 5 5 3 5 5 5 5 5 5 5 5 5125900 7807500 109670 8515600 9189400 11723000 5464300 5745900 5133700 5899200 5931700 4773400 7287800 563210 8685300 8722800 11611000 5727200 6148300 5265500 5755100 5697400 2 2 1 2 2 2 2 2 2 2 2 4012100 7152600 44199 7626500 4566300 3953200 3646100 5460800 4885100 5242700 5862400 3735900 6675900 368410 7691900 4357000 4287700 3784800 5469600 4950200 5129300 5625000 3 3 2 3 3 3 3 3 3 3 3 2448600000 1623800000 824760000 19094 1025 17541 97408;97409;97410;97411;97412 117998;117999;118000;118001;118002 118001 5 TLNDELEIIEGMK Oxidation (M) 1519.744 0.74397482 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 2.41 1.23 7 5 5 4 1 9 13 73.911 73.805 2;3 9.7476E-25 23521 20211116_3428_TMUAki_TMT10x_P_F1 202.31 175.19 84369000 140560000 481750 133820000 88360000 127830000 93153000 98265000 99297000 102070000 108020000 78558000 131130000 7366600 136910000 84865000 129930000 94429000 101520000 101060000 99529000 103930000 18 18 10 18 18 18 18 18 18 18 18 40833000 64941000 89519 62479000 40744000 77928000 42731000 46331000 47051000 48406000 49634000 38019000 60588000 3361400 64144000 39115000 77725000 43374000 48763000 47769000 47191000 47800000 8 8 3 8 8 8 8 8 8 8 8 43536000 75616000 392230 71345000 47617000 49900000 50422000 51935000 52246000 53662000 58382000 40539000 70542000 4005200 72765000 45750000 52203000 51055000 52753000 53289000 52338000 56129000 10 10 7 10 10 10 10 10 10 10 10 34411000000 14642000000 19769000000 19095 613 17542 97413;97414;97415;97416;97417;97418;97419;97420;97421;97422;97423;97424;97425;97426;97427;97428;97429;97430;97431;97432;97433;97434 118003;118004;118005;118006;118007;118008;118009;118010;118011;118012;118013;118014;118015;118016;118017;118018;118019;118020;118021;118022;118023;118024;118025 118004 609 23 TLNDELEIIEGMK Unmodified 1503.7491 0.7490602 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 2.08 0.985 12 18 6 3 1 20 20 54.102 54.028 2;3 1.037E-22 27702 20211116_3439_TMUAki_TMT10x_S_F1 211.38 170.88 183710000 275000000 480590 345270000 169820000 136840000 200520000 49430000 37562000 67717000 172630000 171040000 256870000 13913000 344150000 163490000 149830000 196740000 55216000 50136000 65382000 162350000 23 23 11 23 22 22 23 22 22 23 23 99298000 142390000 97561 184560000 88082000 86470000 100920000 23006000 17075000 32908000 90423000 92447000 133020000 6943000 183840000 84707000 92714000 99099000 26890000 23643000 31731000 84957000 10 10 3 10 10 10 10 9 9 10 10 84410000 132610000 383030 160710000 81738000 50375000 99599000 26424000 20487000 34809000 82211000 78594000 123850000 6969600 160310000 78779000 57118000 97642000 28326000 26494000 33651000 77395000 13 13 8 13 12 12 13 13 13 13 13 19061000000 8800400000 10260000000 19096 613 17542 97435;97436;97437;97438;97439;97440;97441;97442;97443;97444;97445;97446;97447;97448;97449;97450;97451;97452;97453;97454;97455;97456;97457;97458;97459;97460;97461;97462;97463;97464;97465;97466;97467;97468;97469;97470;97471;97472;97473;97474 118026;118027;118028;118029;118030;118031;118032;118033;118034;118035;118036;118037;118038;118039;118040;118041;118042;118043;118044;118045;118046;118047;118048;118049;118050;118051;118052;118053;118054;118055;118056;118057;118058;118059 118043 34 TLNDELEIIEGMKFDR Oxidation (M) 1937.9404 0.9404428 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 1 1 By MS/MS By MS/MS 3.17 1.57 2 3 2 2 2 1 5 7 72.777 72.679 2;3 2.7801E-15 23557 20211116_3440_TMUAki_TMT10x_S_F2 142.12 96.238 125400000 218790000 197540 148250000 167380000 248090000 168990000 247200000 241010000 223530000 203860000 116750000 203890000 9058100 157720000 160410000 246560000 173560000 250670000 240710000 219290000 197800000 15 15 5 15 15 15 15 15 15 15 15 57126000 93106000 127580 66144000 51416000 139260000 76058000 106800000 104650000 96102000 85026000 53183000 86777000 3747300 70476000 49861000 136630000 76746000 109910000 104520000 94299000 82629000 7 7 3 7 7 7 7 7 7 7 7 68278000 125680000 69956 82107000 115970000 108830000 92929000 140400000 136360000 127430000 118830000 63565000 117110000 5310800 87239000 110550000 109930000 96811000 140760000 136200000 124990000 115170000 8 8 2 8 8 8 8 8 8 8 8 52457000000 25605000000 26852000000 19097 613 17543 97475;97476;97477;97478;97479;97480;97481;97482;97483;97484;97485;97486 118060;118061;118062;118063;118064;118065;118066;118067;118068;118069;118070;118071;118072;118073;118074;118075;118076 118070 609 17 TLNDELEIIEGMKFDR Unmodified 1921.9455 0.94552817 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 3 1.17 2 4 12 1 2 1 6 16 49.722 49.631 3 3.9681E-43 27450 20211116_3439_TMUAki_TMT10x_S_F1 233.2 198.59 145830000 236470000 616830 204120000 180330000 149830000 175180000 63237000 49948000 82243000 149820000 135780000 220530000 12152000 209710000 172750000 154040000 174090000 69234000 59837000 79540000 141430000 34 34 23 34 34 34 34 34 34 34 34 62447000 98475000 20700 84923000 55349000 75422000 71411000 24721000 17394000 31991000 61503000 58139000 91837000 4444300 87451000 53434000 76282000 69923000 27911000 21624000 30944000 57964000 6 6 1 6 6 6 6 6 6 6 6 83381000 138000000 596130 119200000 124980000 74409000 103770000 38516000 32554000 50252000 88313000 77638000 128700000 7707600 122260000 119320000 77759000 104160000 41324000 38213000 48595000 83466000 28 28 22 28 28 28 28 28 28 28 28 20993000000 10931000000 10063000000 19098 613 17543 97487;97488;97489;97490;97491;97492;97493;97494;97495;97496;97497;97498;97499;97500;97501;97502;97503;97504;97505;97506;97507;97508 118077;118078;118079;118080;118081;118082;118083;118084;118085;118086;118087;118088;118089;118090;118091;118092;118093;118094;118095;118096;118097;118098;118099;118100;118101;118102;118103;118104;118105;118106;118107;118108;118109;118110;118111;118112 118083 36 TLNEWDSR Unmodified 1019.4672 0.46722311 185 O15371;O15371-2;O15371-3 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 0 0 0 0 By MS/MS 3 0 1 1 38.514 38.556 2 0.020582 11384 20211116_3430_TMUAki_TMT10x_P_F3 71.708 38.192 233790 328750 0 425380 959060 407440 368930 149120 169250 181620 329380 217670 307120 28355 426860 904670 410370 398900 165630 186600 176040 312790 1 1 0 1 1 1 1 1 1 1 1 233790 328750 0 425380 959060 407440 368930 149120 169250 181620 329380 217670 307120 28355 426860 904670 410370 398900 165630 186600 176040 312790 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9959700 9959700 0 19099 185 17544 97509 118113 118113 1 TLNPVFNEQFTFK Unmodified 1583.7984 0.79839365 759 P21579 SYT1 Synaptotagmin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 4 2 2 4 74.923 74.872 2;3 2.7149E-19 26129 20211116_3439_TMUAki_TMT10x_S_F1 194.24 160.36 23907000 37673000 166590 33520000 24717000 35281000 27603000 21897000 22410000 23852000 28900000 22261000 35137000 2035600 34515000 23775000 35532000 27687000 22997000 23256000 23214000 27678000 7 7 4 7 7 7 7 7 7 7 7 13652000 20839000 166590 18669000 12505000 23917000 14884000 12758000 13045000 13831000 16284000 12712000 19437000 1271000 19278000 12060000 23790000 14916000 13566000 13467000 13464000 15608000 4 4 4 4 4 4 4 4 4 4 4 10256000 16834000 0 14850000 12211000 11364000 12719000 9139500 9365200 10020000 12616000 9548300 15700000 764570 15238000 11714000 11742000 12771000 9431100 9789600 9750200 12070000 3 3 0 3 3 3 3 3 3 3 3 3331100000 1446300000 1884800000 19100 759 17545 97510;97511;97512;97513;97514;97515 118114;118115;118116;118117;118118;118119;118120;118121 118118 8 TLNQLGTPQDSPELR Unmodified 1667.8479 0.84786304 190 O15400;O15400-2 STX7 Syntaxin-7 yes no 0 0 0 0 By MS/MS 4 0 1 1 47.978 48.151 3 0.00071284 14046 20211116_3442_TMUAki_TMT10x_S_F4 70.41 51.953 2488100 3731800 0 4315500 2161000 1475600 1548100 3745700 4243400 3012300 3445000 2316600 3484300 188220 4318800 2055800 1729400 1685800 3671800 4170600 2972200 3348000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2488100 3731800 0 4315500 2161000 1475600 1548100 3745700 4243400 3012300 3445000 2316600 3484300 188220 4318800 2055800 1729400 1685800 3671800 4170600 2972200 3348000 1 1 0 1 1 1 1 1 1 1 1 160560000 0 160560000 19101 190 17546 97516 118122 118122 1 TLNQQLTNHIR Unmodified 1336.7211 0.72114638 1140 P50570;P50570-3;P50570-2;P50570-5;P50570-4 DNM2 Dynamin-2 yes no 0 0 0 0 By MS/MS By matching 1 0 2 1 1 33.798 33.803 3 6.6161E-06 7497 20211116_3428_TMUAki_TMT10x_P_F1 112.45 87.53 258670 411110 1600.7 408480 526520 555270 346520 301960 314930 230100 357920 240860 383600 26689 419090 500430 550930 359920 317650 323290 227690 343940 1 1 1 1 1 1 1 1 1 1 1 258670 411110 1600.7 408480 526520 555270 346520 301960 314930 230100 357920 240860 383600 26689 419090 500430 550930 359920 317650 323290 227690 343940 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 53016000 18729000 34287000 19102 1140 17547 97517;97518 118123 118123 1 TLPCGNHTCEQVCHVGACGECPR Unmodified 2698.0927 0.092713021 2033 Q6ZNB6;Q6ZNB6-2 NFXL1 NF-X1-type zinc finger protein NFXL1 yes no 0 0 0 0 By MS/MS 4 0 1 1 31.858 31.888 4 0.0076829 7144 20211116_3431_TMUAki_TMT10x_P_F4 44.167 40.879 254470 392580 595.61 452310 675390 579860 360300 269470 247550 201760 337970 236940 366540 27548 459120 639710 575880 378450 287610 259980 199840 323230 1 1 1 1 1 1 1 1 1 1 1 254470 392580 595.61 452310 675390 579860 360300 269470 247550 201760 337970 236940 366540 27548 459120 639710 575880 378450 287610 259980 199840 323230 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42033000 42033000 0 19103 2033 17548 97519 118124 118124 1 TLPETLDPAEYNISPETR Unmodified 2044.9953 0.99531514 409 O95168;O95168-2 NDUFB4 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 yes no 0 0 0 0 By MS/MS 3 0 1 1 67.584 67.122 3 0.015038 24140 20211116_3441_TMUAki_TMT10x_S_F3 47.088 35.818 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19104 409 17549 97520 118125 118125 1 TLPGSDWTPNAQFITR Unmodified 1802.8951 0.89514758 1254 P56192;P56192-2 MARS Methionine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 4 4 4 4 66.965 67.028 2;3 1.2064E-59 21064 20211116_3436_TMUAki_TMT10x_P_F8 277.82 227.46 15471000 28314000 123140 24628000 21192000 26863000 23045000 17257000 15558000 17563000 21829000 14406000 26406000 1463000 25419000 20373000 27013000 23046000 18039000 16378000 17140000 20864000 5 5 4 5 5 5 5 5 5 5 5 9060400 16875000 77449 14091000 12796000 18908000 14633000 8967000 7974000 8849800 12736000 8436700 15735000 875660 14644000 12320000 18741000 14541000 9615200 8572500 8648000 12138000 3 3 3 3 3 3 3 3 3 3 3 6411100 11440000 45689 10538000 8396800 7955800 8411100 8289500 7583900 8712900 9093500 5969600 10671000 587330 10775000 8053400 8271600 8505400 8424100 7805100 8492000 8725400 2 2 1 2 2 2 2 2 2 2 2 2368800000 1839300000 529450000 19105 1254 17550 97521;97522;97523;97524;97525;97526;97527;97528 118126;118127;118128;118129;118130;118131;118132;118133;118134;118135 118129 10 TLPHFIKDDYGPESR Unmodified 1773.8686 0.86859848 796 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 0 0 0 1 By MS/MS By MS/MS 6.2 0.748 1 2 2 2 3 46.274 46.565 4 1.6777E-06 12061 20211116_3434_TMUAki_TMT10x_P_F6 109.22 97.61 11978000 20711000 183300 22377000 17899000 20178000 13984000 16555000 16344000 15087000 17645000 11153000 19332000 1186500 22677000 17071000 20610000 14462000 16971000 16570000 14795000 16981000 5 5 3 5 5 5 5 5 5 5 5 5638100 9864000 67985 11083000 11828000 14418000 8454400 8133900 8045500 7447400 8579900 5249700 9208800 557160 11271000 11256000 14342000 8739400 8566600 8221800 7301800 8260200 3 3 1 3 3 3 3 3 3 3 3 6339400 10847000 115320 11293000 6071600 5759700 5529200 8421000 8298100 7639700 9064800 5903500 10123000 629310 11407000 5815100 6268700 5722600 8404200 8347900 7493500 8720700 2 2 2 2 2 2 2 2 2 2 2 2002700000 508940000 1493800000 19106 796 17551 97529;97530;97531;97532;97533 118136;118137;118138;118139;118140 118136 5 TLPHGAGHLAFSQR Unmodified 1490.7742 0.77424459 174 O15213 WDR46 WD repeat-containing protein 46 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 33.142 33.147 4 0.00075666 7202 20211116_3428_TMUAki_TMT10x_P_F1 76.311 59.369 1029700 1690900 0 1488400 1200800 1762800 1549500 1137400 1462400 1234800 1386100 958670 1577000 75806 1536800 1159400 1764800 1550800 1190900 1488800 1201900 1339400 2 2 0 2 2 2 2 2 2 2 2 368680 586470 0 549770 714010 870290 540320 487010 562030 475730 539110 343250 547100 32535 568250 680070 858210 557820 514160 570010 465090 520770 1 1 0 1 1 1 1 1 1 1 1 661030 1104400 0 938580 486830 892490 1009200 650410 900340 759040 846950 615420 1029900 43271 968530 479330 906610 993010 676760 918810 736840 818670 1 1 0 1 1 1 1 1 1 1 1 73278000 32210000 41068000 19107 174 17552 97534;97535 118141;118142 118141 2 TLPLCVIGGDHK Unmodified 1308.686 0.68600643 2252 Q8NFH4 NUP37 Nucleoporin Nup37 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 51.942 52.54 3 0.00017532 16870 20211116_3446_TMUAki_TMT10x_S_F7 86.262 70.691 11184000 17361000 264370 21466000 16700000 14953000 11885000 12071000 10900000 10400000 14686000 10415000 16215000 1250900 21511000 15908000 15570000 12276000 12369000 11266000 10226000 14050000 2 2 2 2 2 2 2 2 2 2 2 5587700 8335500 106860 10008000 11242000 11094000 8206400 6066300 4886500 4999100 7279500 5203500 7784100 642050 10108000 10710000 11122000 8380100 6389600 5201400 4926300 6948100 1 1 1 1 1 1 1 1 1 1 1 5596000 9025500 157510 11458000 5458000 3858500 3678200 6005200 6013400 5400700 7407000 5211600 8430800 608810 11403000 5198200 4447800 3896300 5979300 6064900 5299500 7102200 1 1 1 1 1 1 1 1 1 1 1 798050000 470970000 327080000 19108 2252 17553 97536;97537 118143;118144 118144 2 TLPLTGSTFHDQIAMLSHR Unmodified 2124.0786 0.078608032 1242 P55265;P55265-5;P55265-4 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 0 0 By MS/MS 2 0 1 1 60.249 59.986 4 5.6396E-18 19660 20211116_3429_TMUAki_TMT10x_P_F2 155 139.37 4856300 7726500 290430 8065300 6561500 10956000 6673700 6390100 5566000 6051700 6505500 4523800 7210900 697170 8247200 6311800 10881000 6729300 6717400 5744300 5924300 6246600 2 2 2 2 2 2 2 2 2 2 2 4856300 7726500 290430 8065300 6561500 10956000 6673700 6390100 5566000 6051700 6505500 4523800 7210900 697170 8247200 6311800 10881000 6729300 6717400 5744300 5924300 6246600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 573150000 573150000 0 19109 1242 17554 97538 118145;118146 118145 2 TLPPATSTEPSVILSK Unmodified 1639.9033 0.90325265 2105 Q86UE4 MTDH Protein LYRIC yes yes 0 0 0 0 By MS/MS 8 0 1 1 30.173 30.551 3 0.067267 5777 20211116_3447_TMUAki_TMT10x_S_F8 37.177 24.196 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19110 2105 17555 97539 118147 118147 1 TLPSGLDDYPR Unmodified 1232.6037 0.60371659 1660 Q13724;Q13724-2 MOGS Mannosyl-oligosaccharide glucosidase yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 49.583 49.612 2 1.3705E-08 14275 20211116_3431_TMUAki_TMT10x_P_F4 125.57 92.211 1845400 2838500 0 3526900 1526100 1425600 1276900 2988400 3010400 2490800 2770400 1718100 2651200 127600 3518000 1455600 1617000 1361900 2944700 2978200 2453100 2679900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1845400 2838500 0 3526900 1526100 1425600 1276900 2988400 3010400 2490800 2770400 1718100 2651200 127600 3518000 1455600 1617000 1361900 2944700 2978200 2453100 2679900 1 1 0 1 1 1 1 1 1 1 1 138370000 33249000 105120000 19111 1660 17556 97540;97541;97542 118148;118149 118148 2 TLQATFPGAFGELYTQNAR Unmodified 2084.0327 0.032703697 919 P35052;P35052-2 GPC1 Glypican-1;Secreted glypican-1 yes no 0 0 0 0 By MS/MS 2 0 1 1 76.045 75.991 3 4.8543E-07 24844 20211116_3440_TMUAki_TMT10x_S_F2 88.396 70.908 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19112 919 17557 97543 118150 118150 1 TLQEMEMSLPEDEGHTR 2 Oxidation (M) 2033.867 0.86701986 2894 Q9NPI1;Q9NPI1-2 BRD7 Bromodomain-containing protein 7 yes no 0 0 2 0 By MS/MS By matching 1 0 2 1 1 34.219 34.214 3 0.017351 7662 20211116_3428_TMUAki_TMT10x_P_F1 43.543 34.446 161080 292610 12454 443790 293520 321630 166430 120350 123580 110340 201390 150080 273600 26816 440230 279000 330670 174140 132220 130350 108170 191870 1 1 1 1 1 1 1 1 1 1 1 161080 292610 12454 443790 293520 321630 166430 120350 123580 110340 201390 150080 273600 26816 440230 279000 330670 174140 132220 130350 108170 191870 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34021000 28608000 5412100 19113 2894 17558 97544;97545 118151 118151 3011;3012 1 TLQEVTQLSQEAQR Unmodified 1629.8322 0.83221298 992 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 By MS/MS By MS/MS 4.17 0.687 1 3 2 4 2 54.611 54.603 2;3 3.6739E-30 16258 20211116_3431_TMUAki_TMT10x_P_F4 218.4 201.37 7034600 11527000 113280 13561000 6640900 11837000 5160000 6411500 5715300 6405200 8402700 6550700 10764000 676310 13665000 6336800 12043000 5328600 6792400 5885400 6255900 8022600 3 3 2 3 3 3 3 3 3 3 3 4171500 6664900 57997 8641200 3344200 9365300 2579700 3722000 3163500 3676300 4993800 3884500 6226500 381340 8686700 3190400 9369200 2674800 4067700 3257700 3592300 4760700 2 2 1 2 2 2 2 2 2 2 2 2863100 4862500 55287 4919800 3296700 2472000 2580300 2689500 2551700 2728900 3408900 2666300 4537400 294970 4978400 3146400 2674200 2653800 2724700 2627600 2663600 3261900 1 1 1 1 1 1 1 1 1 1 1 1719200000 903170000 816030000 19114 992 17559 97546;97547;97548;97549;97550;97551 118152;118153;118154;118155;118156;118157 118154 6 TLQIFNIEMK Unmodified 1235.6584 0.6583947 1471 Q00610;Q00610-2;P53675;P53675-2 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 3.2 2 1 3 3 3 76.225 76.211 2;3 3.4147E-10 26720 20211116_3439_TMUAki_TMT10x_S_F1 176.65 111.61 50911000 78235000 98712 81680000 55779000 53887000 58918000 23445000 20082000 27017000 51936000 47403000 73014000 4269500 82668000 53561000 55927000 58397000 25480000 23259000 26239000 49114000 6 6 2 6 6 6 6 6 6 6 6 28461000 42451000 98712 44105000 30068000 37647000 34533000 13382000 11988000 15512000 27665000 26500000 39618000 2453800 44781000 28947000 38205000 34097000 14894000 13739000 15062000 26202000 4 4 2 4 4 4 4 4 4 4 4 22450000 35783000 0 37575000 25711000 16240000 24385000 10063000 8093300 11506000 24270000 20902000 33396000 1815600 37888000 24614000 17722000 24300000 10586000 9520400 11178000 22912000 2 2 0 2 2 2 2 2 2 2 2 2962500000 1993800000 968630000 19115 1471 17560 97552;97553;97554;97555;97556;97557 118158;118159;118160;118161;118162;118163;118164;118165 118162 8 TLQIFNIEMK Oxidation (M) 1251.6533 0.65330932 1471 Q00610;Q00610-2;P53675;P53675-2 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 1 0 By MS/MS By MS/MS 7.5 0.5 4 4 4 4 67.64 67.858 2;3 0.00040696 21396 20211116_3436_TMUAki_TMT10x_P_F8 94.791 44.184 65486000 116550000 662430 105700000 86612000 124820000 78712000 106990000 104400000 98334000 95090000 60976000 108720000 6050300 108890000 82871000 125570000 81049000 109420000 104760000 96395000 92018000 11 11 7 11 11 11 11 11 11 11 11 34563000 59660000 170020 53973000 49690000 90084000 46302000 54769000 54923000 52314000 47595000 32181000 55648000 3015000 56003000 47556000 88751000 47411000 57395000 55237000 51194000 46140000 5 5 3 5 5 5 5 5 5 5 5 30923000 56895000 492410 51729000 36923000 34731000 32410000 52222000 49480000 46020000 47495000 28795000 53070000 3035300 52883000 35315000 36823000 33639000 52028000 49520000 45201000 45878000 6 6 4 6 6 6 6 6 6 6 6 8713400000 5296000000 3417300000 19116 1471 17560 97558;97559;97560;97561;97562;97563;97564;97565 118166;118167;118168;118169;118170;118171;118172;118173;118174;118175;118176 118169 1984 11 TLQLDEDVLCVSYSPNQK Unmodified 2108.0096 0.0095849934 3201 Q9UNX4 WDR3 WD repeat-containing protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 72.594 72.626 3 0.00020936 22800 20211116_3444_TMUAki_TMT10x_S_F5 66.152 38.881 4155900 7549400 0 6159700 5855400 6864800 4958200 6245500 5409300 5454600 5981100 3869200 7039200 330110 6392600 5589400 6936000 5090200 6357600 5503600 5359900 5752000 2 2 0 2 2 2 2 2 2 2 2 1592600 2821500 0 2522900 1781800 3568900 1890800 2238900 2125100 2059200 2588700 1482700 2631700 110390 2610500 1709600 3541300 1919500 2338100 2168100 2018500 2482900 1 1 0 1 1 1 1 1 1 1 1 2563300 4727800 0 3636700 4073600 3295900 3067400 4006600 3284200 3395500 3392400 2386600 4407500 219720 3782000 3879800 3394700 3170700 4019400 3335500 3341400 3269200 1 1 0 1 1 1 1 1 1 1 1 797680000 499450000 298230000 19117 3201 17561 97566;97567;97568 118177;118178;118179 118179 3 TLQLDNNFEVK Unmodified 1319.6721 0.67213051 3182 Q9UMS4 PRPF19 Pre-mRNA-processing factor 19 yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 0.667 4 4 1 4 5 59.667 59.769 2;3 7.2176E-49 18601 20211116_3433_TMUAki_TMT10x_P_F5 315.2 246 28327000 45294000 277270 52077000 43110000 45219000 32128000 33640000 30082000 30114000 37103000 26377000 42289000 2685700 52546000 41068000 46229000 33099000 34681000 30942000 29556000 35575000 6 6 4 6 6 6 6 6 6 6 6 16965000 26942000 149830 30121000 29959000 35521000 21546000 19523000 18107000 17689000 21182000 15796000 25151000 1599900 30585000 28515000 35494000 22188000 20602000 18681000 17352000 20338000 4 4 2 4 4 4 4 4 4 4 4 11362000 18352000 127440 21956000 13151000 9697400 10582000 14117000 11975000 12424000 15921000 10580000 17138000 1085800 21961000 12553000 10735000 10911000 14079000 12262000 12204000 15237000 2 2 2 2 2 2 2 2 2 2 2 4997900000 2920400000 2077500000 19118 3182 17562 97569;97570;97571;97572;97573;97574;97575;97576;97577 118180;118181;118182;118183;118184;118185;118186;118187 118182 8 TLQLEYR Unmodified 921.49198 0.4919813 2608 Q99829 CPNE1 Copine-1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 42.63 42.741 2 0.0023646 10597 20211116_3444_TMUAki_TMT10x_S_F5 160.52 38.014 10493000 16609000 37599 18342000 19632000 16671000 11548000 12539000 12485000 11120000 14621000 9768800 15505000 909200 18565000 18615000 16994000 12165000 12915000 12736000 10919000 14038000 5 5 2 5 5 5 5 5 5 5 5 5813200 9072700 14275 9946000 14726000 12747000 7101600 6923900 6915100 6137500 8003000 5411900 8469000 513610 10127000 13923000 12682000 7596400 7310100 7081700 6026600 7686500 3 3 1 3 3 3 3 3 3 3 3 4679300 7536400 23324 8396300 4905800 3924200 4446200 5614700 5570200 4982400 6618100 4356900 7035500 395590 8438000 4692700 4311600 4568800 5604400 5654700 4892100 6351800 2 2 1 2 2 2 2 2 2 2 2 630720000 378630000 252100000 19119 2608 17563 97578;97579;97580;97581;97582 118188;118189;118190;118191 118191 4 TLQQQTFK Unmodified 992.5291 0.52909508 1227;1226 P54727;P54725;P54725-3;P54725-2 RAD23B;RAD23A UV excision repair protein RAD23 homolog B;UV excision repair protein RAD23 homolog A no no 0 0 0 0 By MS/MS 7 0 1 1 38.329 38.767 2 0.00047913 10871 20211116_3435_TMUAki_TMT10x_P_F7 160.56 101.64 399890 633640 0 606810 736960 713990 480440 334020 408260 322850 465870 372320 591160 35693 622550 700040 712220 498510 358450 420540 315770 447620 1 1 0 1 1 1 1 1 1 1 1 399890 633640 0 606810 736960 713990 480440 334020 408260 322850 465870 372320 591160 35693 622550 700040 712220 498510 358450 420540 315770 447620 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15458000 15458000 0 19120 1227;1226 17564 97583 118192 118192 1 TLQQQTFKIDIDPEETVK Unmodified 2132.1001 0.10011456 1227 P54727 RAD23B UV excision repair protein RAD23 homolog B yes yes 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 63.864 63.85 3 4.281E-08 19147 20211116_3434_TMUAki_TMT10x_P_F6 108.71 85.384 9240900 16284000 17044 15388000 9839900 14210000 10978000 9249500 8787600 9249200 11791000 8604000 15192000 756070 15744000 9462400 14437000 11008000 9654600 9142300 9033300 11282000 2 2 1 2 2 2 2 2 2 2 2 6068000 10504000 17044 9586800 5910100 10737000 6866100 6250700 5966800 6212800 7496000 5650100 9797800 516760 9862100 5692000 10766000 6886800 6580600 6163800 6069300 7183800 1 1 1 1 1 1 1 1 1 1 1 3172800 5780400 0 5801000 3929800 3473300 4111400 2998800 2820800 3036500 4295300 2953900 5393800 239310 5881700 3770400 3671300 4121000 3074000 2978500 2964000 4097900 1 1 0 1 1 1 1 1 1 1 1 1103200000 440230000 662950000 19121 1227 17565 97584;97585 118193;118194 118193 2 TLQTISLLGYMK Oxidation (M) 1382.7479 0.74793799 260 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 0 0 1 0 By MS/MS By MS/MS 3 0 3 2 1 70.501 70.252 2;3 4.6477E-08 25385 20211116_3441_TMUAki_TMT10x_S_F3 114.72 99.748 2826000 5342700 0 4459700 3566000 7180800 3902300 4119800 3982200 3398000 3581900 2631200 4982000 239600 4652600 3427400 7078700 3943200 4321600 4033500 3348400 3467700 1 1 0 1 1 1 1 1 1 1 1 2826000 5342700 0 4459700 3566000 7180800 3902300 4119800 3982200 3398000 3581900 2631200 4982000 239600 4652600 3427400 7078700 3943200 4321600 4033500 3348400 3467700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 335680000 335680000 0 19122 260 17566 97586;97587;97588 118195;118196;118197 118197 209 3 TLRDLIHGAPVGKPAANR Unmodified 1885.0646 0.064612948 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 2 By matching By MS/MS 3.33 0.471 2 1 1 2 43.006 42.984 5 0.0019683 11905 20211116_3442_TMUAki_TMT10x_S_F4 61.815 52.158 754260 1239600 43755 1645400 590030 621880 572670 1008900 1084400 964980 1105800 702620 1158200 101010 1634600 567960 705360 597630 1004900 1081500 944260 1066000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 754260 1239600 43755 1645400 590030 621880 572670 1008900 1084400 964980 1105800 702620 1158200 101010 1634600 567960 705360 597630 1004900 1081500 944260 1066000 1 1 1 1 1 1 1 1 1 1 1 148060000 38943000 109120000 19123 1723 17567 97589;97590;97591 118198 118198 1 TLREQEIVASSPSLSGLK Unmodified 1914.0422 0.042205751 1109 P49643 PRIM2 DNA primase large subunit yes yes 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 53.727 54.337 3 5.0447E-13 17041 20211116_3435_TMUAki_TMT10x_P_F7 139.9 115.86 10186000 17002000 27810 18097000 10681000 12336000 10521000 9706400 11125000 9728700 12646000 9483900 15869000 875970 18298000 10239000 12863000 10699000 10002000 11345000 9500600 12152000 3 3 2 3 3 3 3 3 3 3 3 3236400 5158000 0 5472800 4088100 6303700 4270000 3032900 3775300 2858000 3956800 3013400 4814200 278910 5573300 3924400 6297100 4306400 3243500 3868800 2798500 3811300 1 1 0 1 1 1 1 1 1 1 1 6949100 11844000 27810 12624000 6593200 6031900 6251000 6673400 7349300 6870700 8689600 6470500 11055000 597060 12725000 6314900 6565900 6392600 6758600 7476100 6702100 8341000 2 2 2 2 2 2 2 2 2 2 2 844590000 555740000 288850000 19124 1109 17568 97592;97593 118199;118200;118201 118199 3 TLREQGVEEHETLLLR Unmodified 1922.0221 0.022139011 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 39.917 39.816 4 4.8372E-08 13014 20211116_3441_TMUAki_TMT10x_S_F3 119.45 98.861 852260 1469300 3435.3 1666000 885190 684540 678720 1221000 1133300 930810 1051900 793570 1371700 21646 1671000 843780 769960 713320 1205700 1130200 921030 1017200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 852260 1469300 3435.3 1666000 885190 684540 678720 1221000 1133300 930810 1051900 793570 1371700 21646 1671000 843780 769960 713320 1205700 1130200 921030 1017200 2 2 1 2 2 2 2 2 2 2 2 111770000 0 111770000 19125 3293 17569 97594;97595 118202;118203 118203 2 TLRNPADSISHVAYR Unmodified 1698.8802 0.88016622 3294 Q9Y4A5;Q9Y4A5-2 TRRAP Transformation/transcription domain-associated protein yes no 0 0 0 1 By MS/MS By matching 1 0 2 1 1 36.776 36.747 4 0.0050033 8673 20211116_3428_TMUAki_TMT10x_P_F1 61.165 35.988 405250 641670 17689 793350 1089700 873620 578400 450360 475910 381780 559540 377460 599310 59670 799840 1033000 875520 610260 477200 491610 375690 537180 1 1 1 1 1 1 1 1 1 1 1 405250 641670 17689 793350 1089700 873620 578400 450360 475910 381780 559540 377460 599310 59670 799840 1033000 875520 610260 477200 491610 375690 537180 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57277000 44546000 12730000 19126 3294 17570 97596;97597 118204 118204 1 TLRPALVGVVK Unmodified 1151.739 0.73902828 2853 Q9HAV7 GRPEL1 GrpE protein homolog 1, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 4.2 0.748 1 2 2 2 3 46.995 47.055 3 3.2383E-15 13565 20211116_3442_TMUAki_TMT10x_S_F4 170.04 136.81 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19127 2853 17571 97598;97599;97600;97601;97602 118205;118206;118207;118208;118209 118208 5 TLSCVDRLEVGEVR Unmodified 1631.8301 0.83010449 1744 Q14C86;Q14C86-6;Q14C86-5;Q14C86-4;Q14C86-2;Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 yes no 0 0 0 1 By matching By MS/MS 3.5 0.5 1 1 1 1 45.986 46.086 3 3.5963E-06 13212 20211116_3442_TMUAki_TMT10x_S_F4 106.42 74.596 1037100 1737600 12684 1848200 957160 826930 792340 1275800 1329800 1099400 1434300 965710 1621800 96682 1862300 914390 915500 828960 1269200 1333000 1081000 1380400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1037100 1737600 12684 1848200 957160 826930 792340 1275800 1329800 1099400 1434300 965710 1621800 96682 1862300 914390 915500 828960 1269200 1333000 1081000 1380400 1 1 1 1 1 1 1 1 1 1 1 76872000 36893000 39978000 19128 1744 17572 97603;97604 118210 118210 1 TLSEVEESISTLISQPN Unmodified 1845.9208 0.92075321 2201 Q8N668 COMMD1 COMM domain-containing protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 82.819 82.806 3 2.6674E-09 28882 20211116_3429_TMUAki_TMT10x_P_F2 121.24 102.41 2935300 4692700 79175 4948700 3405500 4239400 3718000 2795400 2625800 3162800 3847700 2733600 4379700 323700 5019800 3278000 4330100 3721100 2926000 2762500 3073800 3673900 7 7 6 7 7 7 7 7 7 7 7 1426800 2198700 55367 2234900 1405400 2459000 1631700 1248400 1156400 1410600 1780400 1328900 2051800 169590 2280800 1356600 2464100 1628600 1335300 1219400 1370900 1698100 3 3 3 3 3 3 3 3 3 3 3 1508500 2494000 23808 2713800 2000100 1780400 2086200 1546900 1469400 1752300 2067300 1404700 2328000 154110 2739000 1921400 1866100 2092600 1590700 1543100 1702900 1975800 4 4 3 4 4 4 4 4 4 4 4 655840000 376030000 279810000 19129 2201 17573 97605;97606;97607;97608;97609;97610 118211;118212;118213;118214;118215;118216;118217 118211 7 TLSFGSDLNYATR Unmodified 1443.6994 0.69940789 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 3 3 3 3 57.855 58.23 2;3 5.2239E-65 19180 20211116_3446_TMUAki_TMT10x_S_F7 324.78 276.93 25411000 43013000 55329 44438000 33440000 44629000 29799000 30297000 28753000 29450000 33150000 23659000 40141000 2119500 45236000 31966000 45131000 30384000 31502000 29453000 28797000 31842000 7 7 2 7 7 7 7 7 7 7 7 16015000 26570000 34534 27478000 24117000 35439000 21234000 18584000 17581000 18356000 20042000 14911000 24796000 1382400 28087000 23049000 35233000 21576000 19739000 18133000 17937000 19258000 4 4 1 4 4 4 4 4 4 4 4 9395700 16443000 20795 16960000 9322700 9189900 8564800 11713000 11172000 11094000 13107000 8748000 15345000 737120 17149000 8917400 9898000 8808000 11763000 11320000 10860000 12584000 3 3 1 3 3 3 3 3 3 3 3 4131800000 2007100000 2124700000 19130 1684 17574 97611;97612;97613;97614;97615;97616 118218;118219;118220;118221;118222;118223;118224;118225 118224 8 TLSGMESYCVR Oxidation (M) 1317.5693 0.56932169 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 1 0 By MS/MS By MS/MS 4.38 1.32 1 1 2 2 2 4 4 35.665 35.658 2 1.1798E-10 8970 20211116_3433_TMUAki_TMT10x_P_F5 161.86 146.71 4033500 5863400 13137 7591000 10003000 7610700 4755500 4513500 4910900 3756900 5721600 3755400 5477600 400990 7622400 9458700 7682500 5102900 4722700 5017900 3700400 5494300 8 8 2 8 8 8 8 8 8 8 8 2886500 4088900 10967 5380000 8890400 6719900 3743000 3283100 3626800 2738300 4141900 2687500 3820200 314840 5417300 8394600 6685900 4062200 3495100 3713000 2696800 3979600 4 4 1 4 4 4 4 4 4 4 4 1147000 1774500 2170.3 2211100 1113000 890850 1012500 1230400 1284000 1018600 1579700 1067900 1657400 86158 2205100 1064100 996600 1040700 1227600 1304900 1003500 1514700 4 4 1 4 4 4 4 4 4 4 4 687880000 532350000 155530000 19131 1147 17575 97617;97618;97619;97620;97621;97622;97623;97624 118226;118227;118228;118229;118230;118231;118232;118233 118228 1527 8 TLSGMESYCVR Unmodified 1301.5744 0.57440707 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 45.405 45.529 2 1.5586E-23 12868 20211116_3433_TMUAki_TMT10x_P_F5 250.49 230.79 12204000 18636000 267320 25337000 24884000 19836000 15934000 10479000 9620900 9809100 16321000 11365000 17414000 1412000 25292000 23649000 20336000 16436000 11107000 10302000 9607600 15537000 6 6 5 6 6 6 6 6 6 6 6 8411600 12794000 133420 17098000 21778000 17208000 13154000 7292000 6689900 6628600 11276000 7832800 11955000 982390 17141000 20671000 17301000 13593000 7894600 7251400 6501100 10735000 4 4 3 4 4 4 4 4 4 4 4 3792100 5841300 133900 8238800 3106200 2627700 2780800 3187300 2931000 3180500 5045200 3531900 5459600 429580 8151700 2978300 3035600 2842300 3212200 3050200 3106500 4801400 2 2 2 2 2 2 2 2 2 2 2 1053800000 911720000 142120000 19132 1147 17575 97625;97626;97627;97628 118234;118235;118236;118237;118238;118239;118240 118234 7 TLSHPQQMALLDQTK Unmodified 1709.8771 0.87705468 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS 7 0 1 1 46.737 47.302 3 0.00039766 14270 20211116_3435_TMUAki_TMT10x_P_F7 76.574 57.251 3853100 6537000 21362 7194000 8234300 8671800 6265700 3877400 3055800 3723400 4958300 3587800 6102200 400720 7314800 7847300 8635300 6359100 4179600 3316700 3642800 4724200 1 1 1 1 1 1 1 1 1 1 1 3853100 6537000 21362 7194000 8234300 8671800 6265700 3877400 3055800 3723400 4958300 3587800 6102200 400720 7314800 7847300 8635300 6359100 4179600 3316700 3642800 4724200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 351910000 351910000 0 19133 3293 17576 97629 118241 118241 1 TLSLDEVYLIDSGAQYK Unmodified 1913.9622 0.9622241 2912 Q9NQW7;Q9NQW7-3 XPNPEP1 Xaa-Pro aminopeptidase 1 yes no 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 78.148 78.147 3 0.083694 26202 20211116_3433_TMUAki_TMT10x_P_F5 28.112 4.4582 22389000 36842000 101770 36351000 22327000 41203000 25153000 19588000 16034000 19620000 26411000 20847000 34376000 1899200 37191000 21482000 41189000 25083000 21008000 17079000 19160000 25156000 3 3 2 3 3 3 3 3 3 3 3 22389000 36842000 101770 36351000 22327000 41203000 25153000 19588000 16034000 19620000 26411000 20847000 34376000 1899200 37191000 21482000 41189000 25083000 21008000 17079000 19160000 25156000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1018800000 1018800000 0 19134 2912 17577 97630;97631 118242 118242 1 TLSLSGNQLGALPPQLCSLR Unmodified 2124.1361 0.13612291 2213 Q8N9N7 LRRC57 Leucine-rich repeat-containing protein 57 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 3 2 1 75.462 75.452 3 7.6161E-13 25271 20211116_3442_TMUAki_TMT10x_S_F4 125.23 103.24 6878800 11088000 113100 10144000 6770000 11504000 7576900 7325800 6889800 7359200 8659200 6405600 10343000 674180 10436000 6518600 11542000 7622100 7660200 7102000 7186000 8298400 3 3 3 3 3 3 3 3 3 3 3 5220800 8213200 85630 7662300 4701400 9582900 5757900 5249300 4951600 5420200 6435900 4861700 7661700 505370 7884400 4539600 9546500 5760300 5561000 5125300 5286600 6162500 2 2 2 2 2 2 2 2 2 2 2 1657900 2874800 27469 2481900 2068700 1921400 1819000 2076500 1938200 1939000 2223300 1543900 2681100 168810 2551300 1978900 1995500 1861800 2099300 1976700 1899400 2135900 1 1 1 1 1 1 1 1 1 1 1 960580000 602990000 357590000 19135 2213 17578 97632;97633;97634 118243;118244;118245 118245 3 TLSNPLDLALALETTNSLCR Unmodified 2201.1362 0.13618249 2151 Q8IX01;Q8IX01-4;Q8IX01-3 SUGP2 SURP and G-patch domain-containing protein 2 yes no 0 0 0 0 By MS/MS 8 0 1 1 80.886 80.883 3 0.022516 26152 20211116_3447_TMUAki_TMT10x_S_F8 45.031 21.701 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19136 2151 17579 97635 118246 118246 1 TLSSFFTPR Unmodified 1054.5447 0.54474515 724 P18858;P18858-3;P18858-2 LIG1 DNA ligase 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 61.875 61.44 2 0.0384 21810 20211116_3441_TMUAki_TMT10x_S_F3 63.961 49.443 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19137 724 17580 97636 118247 118247 1 TLSSVQNEVQEALQR Unmodified 1700.8693 0.86932676 641 P12270 TPR Nucleoprotein TPR yes yes 0 0 0 0 By MS/MS By MS/MS 5.6 0.49 2 3 3 2 67.382 67.385 2;3 8.1265E-20 21018 20211116_3445_TMUAki_TMT10x_S_F6 150.22 120.88 5873200 9196500 141350 9014300 6446200 11840000 7453800 8224100 6930800 6984300 7660900 5469600 8580600 626690 9251200 6214800 11806000 7491800 8507100 7099700 6872300 7367600 2 2 2 2 2 2 2 2 2 2 2 5873200 9196500 141350 9014300 6446200 11840000 7453800 8224100 6930800 6984300 7660900 5469600 8580600 626690 9251200 6214800 11806000 7491800 8507100 7099700 6872300 7367600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1941400000 1048300000 893080000 19138 641 17581 97637;97638;97639;97640;97641 118248;118249;118250;118251 118251 4 TLSVSPSVERPDYR Unmodified 1604.8158 0.81583463 2597 Q99707;Q99707-2 MTR Methionine synthase yes no 0 0 0 1 By MS/MS By matching 5.33 0.471 2 1 2 1 38.657 38.727 3 4.3749E-06 10216 20211116_3433_TMUAki_TMT10x_P_F5 103.14 61.895 964330 1611700 24297 1935200 2866400 2944000 1458500 1604000 1716800 1347000 1568500 898070 1505100 129230 1966500 2714500 2906800 1561100 1690800 1730000 1326100 1517700 1 1 1 1 1 1 1 1 1 1 1 964330 1611700 24297 1935200 2866400 2944000 1458500 1604000 1716800 1347000 1568500 898070 1505100 129230 1966500 2714500 2906800 1561100 1690800 1730000 1326100 1517700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 117190000 78670000 38523000 19139 2597 17582 97642;97643;97644 118252;118253 118252 2 TLSYLLPAIVHINHQPFLER Unmodified 2360.3005 0.30048612 710 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 0.745 1 2 3 4 2 76.569 76.552 3;4 6.3072E-32 25473 20211116_3433_TMUAki_TMT10x_P_F5 180.05 167.11 19296000 30424000 257310 27874000 19982000 27923000 21564000 16173000 16287000 17291000 21383000 17967000 28379000 1588700 28617000 19207000 28179000 21627000 17070000 16981000 16841000 20470000 9 9 5 9 9 9 9 9 9 9 9 11601000 18299000 190680 16825000 10455000 19372000 13070000 10217000 9523700 10806000 12519000 10803000 17069000 1110600 17306000 10101000 19372000 13011000 10868000 9950200 10529000 11984000 6 6 4 6 6 6 6 6 6 6 6 7695200 12125000 66637 11050000 9527900 8551400 8494100 5955300 6763800 6485400 8864200 7164500 11310000 478080 11311000 9106400 8807300 8616400 6201800 7031300 6312200 8485900 3 3 1 3 3 3 3 3 3 3 3 12790000000 6971000000 5818800000 19140 710 17583 97645;97646;97647;97648;97649;97650 118254;118255;118256;118257;118258;118259;118260;118261;118262 118257 9 TLTAEEAEEEWERR Unmodified 1747.8013 0.80130678 932 P35269 GTF2F1 General transcription factor IIF subunit 1 yes yes 0 0 0 1 By matching By MS/MS 1.33 0.471 2 1 1 2 48.513 48.394 3 3.9486E-72 15396 20211116_3439_TMUAki_TMT10x_S_F1 327.58 287.85 6104600 9882000 54247 11871000 5203300 4493100 5011600 4809700 4268500 4993200 7590600 5684300 9228400 526370 11860000 4986400 5039500 5070500 4879600 4492800 4869100 7219600 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6104600 9882000 54247 11871000 5203300 4493100 5011600 4809700 4268500 4993200 7590600 5684300 9228400 526370 11860000 4986400 5039500 5070500 4879600 4492800 4869100 7219600 3 3 1 3 3 3 3 3 3 3 3 1650000000 803720000 846330000 19141 932 17584 97651;97652;97653 118263;118264;118265 118263 3 TLTAVHDAILEDLVFPSEIVGK Unmodified 2366.2733 0.2733279 1332 P62081 RPS7 40S ribosomal protein S7 yes yes 0 0 0 0 By MS/MS By MS/MS 5.17 0.898 2 1 3 2 4 80.134 80.131 3 3.683E-14 25880 20211116_3444_TMUAki_TMT10x_S_F5 124.35 114.43 28119000 44229000 124440 39304000 28550000 33032000 31364000 22002000 21014000 25023000 30683000 26180000 41252000 2087100 40351000 27429000 33789000 31347000 23017000 22174000 24315000 29299000 8 8 3 8 8 8 8 8 8 8 8 8869700 14001000 0 12326000 8089500 14491000 8322600 7222800 7878800 8327800 9929600 8257900 13058000 641480 12725000 7757100 14465000 8416100 7743500 8107500 8087800 9515300 3 3 0 3 3 3 3 3 3 3 3 19249000 30228000 124440 26979000 20460000 18541000 23042000 14779000 13136000 16696000 20753000 17922000 28194000 1445600 27626000 19672000 19324000 22931000 15274000 14067000 16227000 19784000 5 5 3 5 5 5 5 5 5 5 5 9810400000 4343900000 5466500000 19142 1332 17585 97654;97655;97656;97657;97658;97659 118266;118267;118268;118269;118270;118271;118272;118273;118274 118271 9 TLTAVHDAILEDLVFPSEIVGKR Unmodified 2522.3744 0.37443893 1332 P62081 RPS7 40S ribosomal protein S7 yes yes 0 0 0 1 By MS/MS By MS/MS 7 1.41 2 1 2 2 10 12 5 57.784 57.786 4 8.5728E-57 27243 20211116_3435_TMUAki_TMT10x_P_F7 223.51 209.05 81311000 138660000 669870 116590000 95829000 122050000 104730000 69856000 61751000 73186000 96590000 75708000 129300000 6389100 120590000 92107000 122830000 104440000 73759000 65938000 71340000 92098000 19 19 8 19 19 19 19 19 19 19 19 43477000 67455000 492130 59087000 39709000 76000000 50994000 38844000 33049000 36814000 48054000 40482000 62911000 3536700 61123000 38358000 75545000 50580000 41308000 34940000 36038000 45891000 13 13 6 13 13 13 13 13 13 13 13 37833000 71201000 177740 57507000 56120000 46048000 53735000 31013000 28701000 36372000 48536000 35226000 66387000 2852400 59463000 53749000 47280000 53855000 32451000 30998000 35302000 46207000 6 6 2 6 6 6 6 6 6 6 6 24632000000 12557000000 12075000000 19143 1332 17586 97660;97661;97662;97663;97664;97665;97666;97667;97668;97669;97670;97671;97672;97673;97674;97675;97676 118275;118276;118277;118278;118279;118280;118281;118282;118283;118284;118285;118286;118287;118288;118289;118290;118291;118292;118293 118277 19 TLTEDEIATILQSTLK Unmodified 1774.9564 0.95641044 1588 Q13043;Q13043-2 STK4 Serine/threonine-protein kinase 4;Serine/threonine-protein kinase 4 37kDa subunit;Serine/threonine-protein kinase 4 18kDa subunit yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 81.395 81.406 3 2.5416E-07 26692 20211116_3445_TMUAki_TMT10x_S_F6 102.38 81.715 3854300 5736200 797.79 5706200 3926500 5352200 4101300 2918500 3008500 3112500 4181000 3588500 5352400 290910 5818100 3767400 5419600 4117200 3095900 3150100 3031900 3997000 3 3 1 3 3 3 3 3 3 3 3 2502300 3707200 797.79 3569900 2320000 3946400 2590300 1950100 2037800 2111800 2646500 2329700 3458700 180230 3657200 2229700 3952300 2596200 2088300 2118900 2055800 2534100 2 2 1 2 2 2 2 2 2 2 2 1352000 2029000 0 2136300 1606600 1405800 1511000 968390 970680 1000800 1534500 1258800 1893600 110680 2160900 1537700 1467300 1520900 1007600 1031200 976070 1462900 1 1 0 1 1 1 1 1 1 1 1 514600000 100280000 414320000 19144 1588 17587 97677;97678;97679 118294;118295;118296 118296 3 TLTELILDAQEHVK Unmodified 1608.8723 0.87228688 705 P17480;P17480-2 UBTF Nucleolar transcription factor 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.29 1.03 2 2 2 1 4 3 75.902 75.913 3 2.6468E-24 24974 20211116_3431_TMUAki_TMT10x_P_F4 196.67 166.67 53586000 85817000 796850 89692000 57383000 71231000 59060000 42137000 40098000 45284000 60051000 49899000 80091000 5169800 90951000 55107000 73050000 59233000 44405000 42330000 44097000 57311000 11 11 9 11 11 11 11 11 11 11 11 31512000 47538000 449730 50545000 28974000 47770000 32372000 21532000 19693000 24083000 32534000 29344000 44369000 2979600 51311000 27893000 48246000 32266000 23292000 21045000 23415000 30987000 6 6 5 6 6 6 6 6 6 6 6 22074000 38279000 347130 39147000 28409000 23461000 26689000 20606000 20404000 21201000 27516000 20556000 35722000 2190200 39640000 27214000 24804000 26967000 21113000 21285000 20682000 26324000 5 5 4 5 5 5 5 5 5 5 5 4343000000 2711800000 1631200000 19145 705 17588 97680;97681;97682;97683;97684;97685;97686 118297;118298;118299;118300;118301;118302;118303;118304;118305;118306;118307 118297 11 TLTELILDAQEHVKNPYK Unmodified 2111.1263 0.12626973 705 P17480;P17480-2 UBTF Nucleolar transcription factor 1 yes no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 75.232 75.275 4 1.9838E-50 24515 20211116_3436_TMUAki_TMT10x_P_F8 230.33 218.18 26428000 44891000 536400 36525000 32635000 49526000 34629000 34145000 34383000 36884000 34913000 24611000 41857000 2777900 38047000 31374000 49306000 35014000 35575000 35009000 35910000 33663000 7 7 7 7 7 7 7 7 7 7 7 16714000 27710000 188260 23092000 18097000 36937000 22817000 22303000 22433000 23861000 22077000 15564000 25839000 1580500 24091000 17483000 36446000 22885000 23461000 22826000 23240000 21308000 4 4 4 4 4 4 4 4 4 4 4 9713700 17182000 348140 13433000 14537000 12590000 11812000 11843000 11951000 13022000 12836000 9047000 16018000 1197300 13956000 13892000 12861000 12129000 12114000 12183000 12670000 12355000 3 3 3 3 3 3 3 3 3 3 3 3758800000 1727800000 2031000000 19146 705 17589 97687;97688;97689;97690 118308;118309;118310;118311;118312;118313;118314 118311 7 TLTEPCPLASESR Unmodified 1459.6977 0.69769333 2395 Q969N2;Q969N2-2;Q969N2-4;Q969N2-5;Q969N2-3;Q969N2-6 PIGT GPI transamidase component PIG-T yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 42.748 42.794 2 1.025E-22 13014 20211116_3430_TMUAki_TMT10x_P_F3 211.46 189.96 367230 546460 0 705060 1078500 878080 518790 434090 555540 423160 574330 341920 510490 39686 710670 1020000 873880 556640 463430 564230 413730 553460 1 1 0 1 1 1 1 1 1 1 1 367230 546460 0 705060 1078500 878080 518790 434090 555540 423160 574330 341920 510490 39686 710670 1020000 873880 556640 463430 564230 413730 553460 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 41342000 41342000 0 19147 2395 17590 97691;97692 118315;118316 118315 2 TLTGKEIEIDIEPTDKVER Unmodified 2185.1478 0.14779303 1835 Q15843 NEDD8 NEDD8 yes yes 0 0 0 2 By MS/MS By MS/MS 5.25 0.829 1 1 2 2 2 56.055 56.171 4 2.9704E-12 16355 20211116_3445_TMUAki_TMT10x_S_F6 133.38 106.35 30085000 54738000 433960 42410000 54369000 55686000 36220000 67656000 62568000 53695000 51396000 28014000 51030000 3112900 44334000 51694000 56180000 38504000 67766000 62103000 53017000 49926000 6 6 3 6 6 6 6 6 6 6 6 10225000 18167000 285960 15505000 20178000 30537000 16021000 21773000 20991000 18662000 16594000 9522600 16941000 1253600 16230000 19261000 29985000 16622000 22486000 20981000 18355000 16144000 2 2 2 2 2 2 2 2 2 2 2 19860000 36571000 148010 26905000 34191000 25149000 20200000 45884000 41577000 35033000 34802000 18492000 34089000 1859300 28104000 32433000 26195000 21883000 45280000 41122000 34662000 33782000 4 4 1 4 4 4 4 4 4 4 4 5736400000 3208900000 2527500000 19148 1835 17591 97693;97694;97695;97696 118317;118318;118319;118320;118321;118322 118322 6 TLTGTAALTVQSQEDNLR Unmodified 1916.9803 0.98033378 589 P09960;P09960-2 LTA4H Leukotriene A-4 hydrolase yes no 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 53.642 53.726 3 9.8994E-32 16189 20211116_3433_TMUAki_TMT10x_P_F5 194.19 182.05 21344000 33950000 222970 35934000 30892000 40034000 25126000 30768000 30897000 28621000 30819000 19874000 31687000 1950500 36579000 29479000 40323000 25967000 31686000 31177000 28041000 29732000 8 8 4 8 8 8 8 8 8 8 8 13170000 21242000 181900 22548000 23928000 32145000 18351000 18847000 18233000 17381000 18459000 12263000 19826000 1284500 23054000 22806000 31856000 18903000 19789000 18562000 17035000 17800000 5 5 3 5 5 5 5 5 5 5 5 8174800 12708000 41079 13386000 6963700 7889000 6774800 11921000 12664000 11241000 12360000 7611600 11860000 665940 13526000 6672700 8466500 7064100 11897000 12615000 11006000 11933000 3 3 1 3 3 3 3 3 3 3 3 3307700000 1778200000 1529400000 19149 589 17592 97697;97698;97699;97700;97701 118323;118324;118325;118326;118327;118328;118329;118330 118326 8 TLTGTVIDSGDGVTHVIPVAEGYVIGSCIK Unmodified 3057.5693 0.56925192 1296 P61158 ACTR3 Actin-related protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 6.25 1.09 1 2 1 3 1 81.05 81.023 3;4 4.8854E-15 25202 20211116_3445_TMUAki_TMT10x_S_F6 108.05 100.02 5564200 9861600 65614 8639900 6957000 10189000 7243100 6498200 5945400 6952000 6857900 5181300 9197400 541960 8923600 6681900 10202000 7291900 6806800 6137500 6771000 6587300 4 4 4 4 4 4 4 4 4 4 4 3700800 6613600 65406 5591500 4032600 7809100 4619500 4625500 4392200 5149400 4798800 3446300 6167400 372420 5809600 3885400 7747100 4648000 4879200 4492700 5007600 4616600 3 3 3 3 3 3 3 3 3 3 3 1863400 3248100 207.97 3048400 2924400 2380100 2623600 1872700 1553100 1802600 2059100 1735000 3030000 169540 3113900 2796500 2454500 2643800 1927600 1644800 1763400 1970700 1 1 1 1 1 1 1 1 1 1 1 1853100000 1019400000 833710000 19150 1296 17593 97702;97703;97704;97705 118331;118332;118333;118334;118335 118335 5 TLTGVLPER Unmodified 984.5604 0.56039521 2311 Q8WVY7 UBLCP1 Ubiquitin-like domain-containing CTD phosphatase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 45.556 45.704 2 0.0050984 11760 20211116_3444_TMUAki_TMT10x_S_F5 74.173 41.28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19151 2311 17594 97706;97707 118336;118337 118337 2 TLTLVDTGIGMTK Unmodified 1348.7272 0.72720254 553 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 0 By MS/MS By MS/MS 6.34 1.72 2 5 8 8 9 16 16 67.474 67.603 2;3 1.078E-78 20912 20211116_3447_TMUAki_TMT10x_S_F8 350.95 0 392560000 602490000 2866100 708910000 457510000 414910000 445240000 179110000 136050000 212630000 402210000 365520000 562580000 34034000 711290000 438410000 435520000 442690000 195010000 161380000 206290000 379760000 37 37 20 37 37 37 37 37 37 37 37 223680000 333750000 1456300 391640000 307520000 303210000 287970000 96786000 75142000 117580000 224570000 208270000 311640000 19963000 394120000 294390000 309710000 286540000 109450000 91060000 113980000 212010000 21 21 12 21 21 21 21 21 21 21 21 168880000 268740000 1409800 317270000 149990000 111700000 157260000 82321000 60908000 95052000 177630000 157250000 250940000 14071000 317160000 144020000 125810000 156160000 85562000 70321000 92309000 167740000 16 16 8 16 16 16 16 16 16 16 16 72989000000 39883000000 33106000000 19152 553 17595 97708;97709;97710;97711;97712;97713;97714;97715;97716;97717;97718;97719;97720;97721;97722;97723;97724;97725;97726;97727;97728;97729;97730;97731;97732;97733;97734;97735;97736;97737;97738;97739 118338;118339;118340;118341;118342;118343;118344;118345;118346;118347;118348;118349;118350;118351;118352;118353;118354;118355;118356;118357;118358;118359;118360;118361;118362;118363;118364;118365;118366;118367;118368;118369;118370;118371;118372;118373;118374;118375;118376;118377;118378;118379 118378 42 TLTPDQWAR Unmodified 1086.5458 0.54580778 2798 Q9H3K6 BOLA2 BolA-like protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 45.864 45.988 2 1.7412E-06 12184 20211116_3445_TMUAki_TMT10x_S_F6 166.52 118.67 11318000 18673000 94734 23273000 22964000 18699000 14459000 11480000 11753000 10750000 16442000 10539000 17441000 1150400 23349000 21808000 19169000 15027000 12015000 12241000 10529000 15716000 5 5 3 5 5 5 5 5 5 5 5 6669500 10636000 91416 13488000 19282000 15649000 10955000 6906000 6996800 6707100 9565000 6210600 9935500 808550 13591000 18284000 15612000 11425000 7456800 7382300 6558700 9147500 3 3 2 3 3 3 3 3 3 3 3 4648600 8036400 3317.7 9784600 3682300 3049600 3504000 4574100 4755800 4042400 6877500 4328100 7505300 341820 9757700 3524400 3556400 3602300 4557800 4858700 3969900 6568800 2 2 1 2 2 2 2 2 2 2 2 524360000 440300000 84056000 19153 2798 17596 97740;97741;97742;97743 118380;118381;118382;118383;118384;118385 118385 6 TLTPISAAYAR Unmodified 1162.6346 0.63462279 892 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 46.636 46.588 2 5.8496E-38 14684 20211116_3439_TMUAki_TMT10x_S_F1 287.58 232.82 15177000 25624000 16129 26144000 31172000 35972000 17785000 30006000 30373000 23353000 25430000 14130000 23911000 971850 26781000 29538000 35905000 19130000 30610000 30173000 23082000 24684000 7 7 1 7 7 7 7 7 7 7 7 9371800 15069000 0 15237000 26010000 30859000 13734000 18231000 18421000 14439000 15637000 8724800 14061000 549890 15766000 24620000 30190000 14718000 19060000 18436000 14258000 15171000 3 3 0 3 3 3 3 3 3 3 3 5805600 10555000 16129 10907000 5161500 5112300 4051400 11774000 11953000 8913800 9792900 5405200 9850000 421960 11015000 4917900 5715200 4412200 11550000 11737000 8823500 9513700 4 4 1 4 4 4 4 4 4 4 4 1933200000 1272000000 661190000 19154 892 17597 97744;97745;97746;97747 118386;118387;118388;118389;118390;118391;118392 118391 7 TLTPLGR Unmodified 756.44939 0.4493882 2489 Q96HS1;Q96HS1-2 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 6 2.61 1 1 1 2 3 2 36.217 36.535 2 0.044431 8562 20211116_3436_TMUAki_TMT10x_P_F8 72.138 42.8 2099900 3225700 5633.9 3355700 3405000 3351500 2280000 1731100 1563600 1708100 2621800 1954900 3010400 152260 3414100 3234000 3378100 2349300 1841200 1659600 1669100 2496400 3 3 1 3 3 3 3 3 3 3 3 2099900 3225700 5633.9 3355700 3405000 3351500 2280000 1731100 1563600 1708100 2621800 1954900 3010400 152260 3414100 3234000 3378100 2349300 1841200 1659600 1669100 2496400 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 233960000 141550000 92412000 19155 2489 17598 97748;97749;97750;97751;97752 118393;118394 118393 2 TLTSSGQVTLGDACSASTSR Unmodified 1997.9324 0.9323973 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4;Q7Z4S6-6 KIF21A Kinesin-like protein KIF21A yes no 0 0 0 0 By MS/MS By MS/MS 5.25 0.829 1 1 2 2 2 43.584 43.697 3 8.0274E-25 10924 20211116_3434_TMUAki_TMT10x_P_F6 173.21 162.39 4013700 6595100 41584 7914700 5810700 6074300 4001400 5662600 6358600 5120700 5528200 3737100 6158900 301270 7953600 5525700 6292400 4226300 5761900 6336100 5023500 5358600 6 6 2 6 6 6 6 6 6 6 6 1668700 2402700 10568 3123800 3868700 4084100 2203100 2268700 2513400 1847100 2142400 1553600 2244600 152810 3150300 3666600 4060600 2331400 2385700 2530200 1821300 2078200 2 2 1 2 2 2 2 2 2 2 2 2345000 4192400 31016 4790900 1942000 1990200 1798300 3393900 3845100 3273600 3385800 2183500 3914200 148460 4803300 1859100 2231800 1895000 3376200 3805900 3202100 3280400 4 4 1 4 4 4 4 4 4 4 4 1497400000 679760000 817610000 19156 2082 17599 97753;97754;97755;97756 118395;118396;118397;118398;118399;118400 118396 6 TLTTVQGIADDYDK Unmodified 1538.7464 0.74641766 1003 P41567;O60739 EIF1;EIF1B Eukaryotic translation initiation factor 1;Eukaryotic translation initiation factor 1b yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 3 3 4 2 60.012 60.153 2;3 5.9798E-37 18560 20211116_3431_TMUAki_TMT10x_P_F4 239.39 212.79 14692000 23987000 103480 27143000 26498000 36034000 20701000 16635000 17598000 17164000 19383000 13680000 22394000 1469600 27600000 25267000 35724000 21205000 17908000 18103000 16741000 18643000 4 4 2 4 4 4 4 4 4 4 4 14692000 23987000 103480 27143000 26498000 36034000 20701000 16635000 17598000 17164000 19383000 13680000 22394000 1469600 27600000 25267000 35724000 21205000 17908000 18103000 16741000 18643000 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2159900000 2159900000 0 19157 1003 17600 97757;97758;97759;97760;97761;97762 118401;118402;118403;118404;118405;118406;118407 118402 7 TLTVHEK Unmodified 826.45487 0.45486751 1881 Q2TAY7;Q2TAY7-2 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes no 0 0 0 0 By MS/MS 4 0 1 1 30.455 30.489 3 0.076014 6585 20211116_3431_TMUAki_TMT10x_P_F4 37.159 20.195 718280 1130000 0 974690 1153900 1234900 922740 644080 598410 647750 794770 668760 1053900 61806 1009200 1100300 1228700 938020 684790 629940 632470 760600 1 1 0 1 1 1 1 1 1 1 1 718280 1130000 0 974690 1153900 1234900 922740 644080 598410 647750 794770 668760 1053900 61806 1009200 1100300 1228700 938020 684790 629940 632470 760600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19275000 19275000 0 19158 1881 17601 97763 118408 118408 1 TLVAHYPPVQVLFEK Unmodified 1739.961 0.9610423 1183 P52701;P52701-3;P52701-4;P52701-2 MSH6 DNA mismatch repair protein Msh6 yes no 0 0 0 0 By MS/MS By MS/MS 1.86 0.35 1 6 6 1 69.478 69.236 3 1.0572E-06 21834 20211116_3428_TMUAki_TMT10x_P_F1 97.836 64.212 15238000 25387000 342650 21659000 15602000 24946000 16098000 23467000 25185000 23516000 20071000 14190000 23675000 1587800 22408000 14993000 25178000 16584000 23936000 25042000 22965000 19520000 2 2 2 2 2 2 2 2 2 2 2 4719700 9140900 13818 6788900 6674500 13709000 5828400 8783900 9405500 7495800 6890200 4394600 8520700 431550 7195400 6379400 13429000 6066900 9140900 9322700 7373900 6724600 1 1 1 1 1 1 1 1 1 1 1 10518000 16246000 328830 14870000 8927500 11237000 10270000 14683000 15780000 16020000 13181000 9795900 15154000 1156200 15212000 8613700 11749000 10518000 14795000 15720000 15591000 12796000 1 1 1 1 1 1 1 1 1 1 1 1751700000 721230000 1030400000 19159 1183 17602 97764;97765;97766;97767;97768;97769;97770 118409;118410;118411;118412;118413;118414;118415 118409 7 TLVDIAK Unmodified 758.4538 0.45380487 2609 Q99832;Q99832-3 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 By MS/MS By MS/MS 5.29 1.03 2 2 2 1 4 3 50.051 50.203 2 0.0032839 13615 20211116_3444_TMUAki_TMT10x_S_F5 119.21 22.144 25395000 38695000 291290 39882000 33633000 33125000 29265000 28646000 28543000 27680000 32604000 23647000 36111000 2492200 40501000 32156000 34062000 29891000 29323000 29214000 27073000 31327000 5 5 5 5 5 5 5 5 5 5 5 10725000 15517000 140290 16166000 17065000 19870000 12884000 11408000 11848000 11491000 13175000 9987300 14482000 1108700 16502000 16266000 19823000 13255000 12029000 12146000 11220000 12668000 2 2 2 2 2 2 2 2 2 2 2 14669000 23178000 151000 23716000 16568000 13256000 16381000 17238000 16695000 16188000 19429000 13660000 21629000 1383500 23999000 15890000 14239000 16636000 17294000 17067000 15854000 18658000 3 3 3 3 3 3 3 3 3 3 3 1865500000 895040000 970460000 19160 2609 17603 97771;97772;97773;97774;97775;97776;97777 118416;118417;118418;118419;118420;118421;118422 118421 7 TLVEHVGMK Unmodified 1012.5376 0.53755128 1799 Q15397 KIAA0020 Pumilio domain-containing protein KIAA0020 yes yes 0 0 0 0 By MS/MS 6 0 1 1 36.213 36.201 3 0.065619 8006 20211116_3434_TMUAki_TMT10x_P_F6 37.556 17.959 276800 435840 7460.9 460600 494350 487980 316940 238560 249630 232980 330230 257780 406780 32949 468540 470000 489830 328680 254970 259760 227770 316070 1 1 1 1 1 1 1 1 1 1 1 276800 435840 7460.9 460600 494350 487980 316940 238560 249630 232980 330230 257780 406780 32949 468540 470000 489830 328680 254970 259760 227770 316070 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6848700 6848700 0 19161 1799 17604 97778 118423 118423 1 TLVLLDNLNVR Unmodified 1268.7452 0.74523587 976 P39656;P39656-3;P39656-2 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 0 0 0 0 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 70.837 70.9 2 3.6847E-23 22633 20211116_3436_TMUAki_TMT10x_P_F8 240.78 171.87 36624000 59836000 457410 55739000 43053000 59507000 42975000 41306000 38816000 40848000 47704000 34103000 55818000 3427200 57209000 41299000 59981000 43467000 42902000 39986000 39913000 45743000 7 7 5 7 7 7 7 7 7 7 7 20449000 33033000 130220 31229000 22418000 41113000 24717000 22534000 21102000 21926000 26257000 19040000 30817000 1718700 32134000 21553000 40856000 24839000 23831000 21808000 21439000 25169000 4 4 2 4 4 4 4 4 4 4 4 16175000 26803000 327190 24510000 20635000 18394000 18258000 18772000 17715000 18922000 21447000 15063000 25002000 1708400 25075000 19746000 19124000 18628000 19072000 18178000 18474000 20574000 3 3 3 3 3 3 3 3 3 3 3 4574600000 2561900000 2012700000 19162 976 17605 97779;97780;97781;97782;97783;97784 118424;118425;118426;118427;118428;118429;118430 118427 7 TLVLLMGK Oxidation (M) 889.53067 0.53067499 540 P07737;CON__P02584 PFN1 Profilin-1 yes no 0 0 1 0 By MS/MS By MS/MS 3.4 2.46 2 3 2 1 2 4 6 58.388 58.235 2;3 0.0046663 17648 20211116_3440_TMUAki_TMT10x_S_F2 101.64 85.949 68820000 118810000 754030 118840000 112890000 125170000 78921000 103800000 107090000 94487000 105290000 64083000 110860000 6897600 121330000 107430000 126650000 82701000 106340000 107650000 92664000 101620000 8 8 7 8 8 8 8 8 8 8 8 35663000 60736000 518630 58219000 74356000 91265000 46492000 50030000 52741000 46519000 51431000 33209000 56664000 3853900 60065000 70618000 90010000 48810000 52843000 53335000 45577000 49654000 4 4 3 4 4 4 4 4 4 4 4 33157000 58077000 235400 60625000 38537000 33910000 32428000 53768000 54345000 47968000 53855000 30875000 54201000 3043700 61268000 36812000 36639000 33891000 53492000 54310000 47087000 51967000 4 4 4 4 4 4 4 4 4 4 4 7624100000 4214200000 3409900000 19163 540 17606 97785;97786;97787;97788;97789;97790;97791;97792;97793;97794 118431;118432;118433;118434;118435;118436;118437;118438;118439 118436 473 9 TLVLLMGK Unmodified 873.53576 0.53576037 540 P07737;CON__P02584 PFN1 Profilin-1 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 1.12 2 2 2 2 4 4 70.039 69.902 2 0.00043755 23717 20211116_3429_TMUAki_TMT10x_P_F2 148.98 89.777 181650000 280170000 2366500 311430000 212900000 180090000 211820000 66238000 42742000 85645000 194800000 169150000 261540000 17284000 313540000 204230000 189010000 209680000 73673000 56277000 82846000 183210000 9 9 5 9 9 9 9 9 9 9 9 111020000 162960000 461450 187960000 163030000 137840000 135170000 39684000 26016000 53945000 121710000 103370000 152150000 10240000 189240000 155640000 141310000 135180000 45729000 34639000 52098000 114450000 6 6 3 6 6 6 6 6 6 6 6 70630000 117210000 1905100 123470000 49877000 42246000 76648000 26554000 16726000 31699000 73088000 65775000 109400000 7043900 124300000 48593000 47695000 74492000 27944000 21638000 30747000 68760000 3 3 2 3 3 3 3 3 3 3 3 7502000000 4477300000 3024700000 19164 540 17606 97795;97796;97797;97798;97799;97800;97801;97802 118440;118441;118442;118443;118444;118445;118446;118447;118448;118449 118440 10 TLVLSNLSYSATEETLQEVFEK Unmodified 2500.2585 0.2584657 729 P19338 NCL Nucleolin yes yes 0 0 0 0 By MS/MS By MS/MS 4.87 1.62 2 2 6 6 3 2 2 11 12 85.138 85.135 3 2.0264E-68 26224 20211116_3434_TMUAki_TMT10x_P_F6 250.45 224.96 82419000 138430000 720290 112470000 91457000 121670000 104440000 87571000 95267000 99697000 103830000 76741000 129070000 6970400 116710000 88027000 122610000 104980000 91120000 97623000 96869000 99899000 30 30 14 30 30 30 30 30 30 30 30 45825000 73829000 366370 61230000 44622000 82258000 51205000 48266000 50507000 54527000 56026000 42668000 68843000 3635700 63669000 42948000 81738000 51574000 50977000 51609000 52996000 53876000 17 17 5 17 17 17 17 17 17 17 17 36594000 64603000 353920 51244000 46836000 39410000 53239000 39305000 44759000 45170000 47807000 34074000 60232000 3334800 53044000 45080000 40876000 53405000 40143000 46014000 43873000 46023000 13 13 9 13 13 13 13 13 13 13 13 29648000000 12683000000 16965000000 19165 729 17607 97803;97804;97805;97806;97807;97808;97809;97810;97811;97812;97813;97814;97815;97816;97817;97818;97819;97820;97821;97822;97823;97824;97825 118450;118451;118452;118453;118454;118455;118456;118457;118458;118459;118460;118461;118462;118463;118464;118465;118466;118467;118468;118469;118470;118471;118472;118473;118474;118475;118476;118477;118478;118479;118480;118481 118462 32 TLVNPANVTFK Unmodified 1202.6659 0.66592292 350 O75608;O75608-2 LYPLA1 Acyl-protein thioesterase 1 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 59.481 59.234 2 1.0021E-14 18092 20211116_3440_TMUAki_TMT10x_S_F2 194.5 145.71 9780500 15999000 83523 16759000 12352000 13359000 9359100 14771000 14954000 13431000 14699000 9106700 14932000 860620 16993000 11770000 13851000 9823100 14907000 14960000 13173000 14187000 3 3 2 3 3 3 3 3 3 3 3 3293800 4943200 13867 5205300 5852900 7428700 4179400 4726000 4805000 4218200 4482000 3067000 4613500 321850 5325000 5570800 7370000 4346200 4926300 4849400 4140600 4333600 1 1 1 1 1 1 1 1 1 1 1 6486700 11056000 69656 11554000 6499400 5930100 5179800 10045000 10150000 9212700 10217000 6039700 10318000 538780 11668000 6198800 6480600 5476900 9980200 10110000 9031900 9853800 2 2 1 2 2 2 2 2 2 2 2 912640000 606680000 305960000 19166 350 17608 97826;97827 118482;118483;118484 118483 3 TLVPGPPGSSRPVK Unmodified 1390.7932 0.79324869 1704 Q14318;Q14318-2 FKBP8 Peptidyl-prolyl cis-trans isomerase FKBP8 yes no 0 0 0 1 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 38.101 37.995 3 2.9299E-09 10770 20211116_3429_TMUAki_TMT10x_P_F2 128.96 88.238 2767000 4674100 41845 4756900 4351800 3659600 3113400 3367300 3340500 2869400 3775800 2576600 4361800 290600 4830600 4144100 3789300 3229800 3423500 3403900 2822900 3628900 3 3 3 3 3 3 3 3 3 3 3 1299500 2058300 11828 2193900 2738700 2268400 1463700 1201100 1389300 1093900 1627100 1210000 1921100 138910 2229700 2594600 2282300 1549100 1271900 1425100 1072800 1562200 1 1 1 1 1 1 1 1 1 1 1 1467500 2615800 30016 2563000 1613100 1391300 1649600 2166100 1951200 1775500 2148700 1366600 2440600 151680 2600900 1549500 1507000 1680700 2151600 1978800 1750100 2066700 2 2 2 2 2 2 2 2 2 2 2 264270000 152630000 111640000 19167 1704 17609 97828;97829;97830;97831 118485;118486;118487 118485 3 TLVSVTK Unmodified 746.4538 0.45380487 544 P07900;P07900-2;Q58FG1 HSP90AA1;HSP90AA4P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A4 yes no 0 0 0 0 By MS/MS By MS/MS 5.11 2.77 2 1 2 2 2 4 5 41.8 41.956 2 0.0012535 10803 20211116_3436_TMUAki_TMT10x_P_F8 139.68 51.65 58994000 94389000 593920 92283000 76224000 85903000 72122000 62376000 60408000 62144000 77955000 54932000 88067000 5491100 94198000 73007000 87377000 73009000 64600000 62590000 60703000 74657000 9 9 5 9 9 9 9 9 9 9 9 29694000 45058000 0 44366000 40011000 53108000 35251000 29551000 30571000 30008000 37795000 27647000 42041000 2411600 45440000 38232000 53034000 35861000 31248000 31561000 29288000 36236000 4 4 0 4 4 4 4 4 4 4 4 29299000 49331000 593920 47918000 36213000 32795000 36871000 32825000 29837000 32136000 40160000 27285000 46026000 3079500 48758000 34775000 34343000 37148000 33352000 31028000 31414000 38421000 5 5 5 5 5 5 5 5 5 5 5 2824000000 1523000000 1301100000 19168 544 17610 97832;97833;97834;97835;97836;97837;97838;97839;97840 118488;118489;118490;118491;118492;118493;118494;118495;118496 118491 9 TLVVHEK Unmodified 824.4756 0.47560295 468 P00441 SOD1 Superoxide dismutase [Cu-Zn] yes yes 0 0 0 0 By MS/MS By MS/MS 4.6 0.49 2 3 4 1 30.182 30.187 2;3 0.0004555 7370 20211116_3433_TMUAki_TMT10x_P_F5 142.36 94.188 9218700 14684000 169410 15317000 10756000 13444000 8852300 6466400 6942100 6997100 10804000 8584800 13705000 941750 15553000 10276000 13654000 9019700 6942600 7283000 6811800 10303000 6 6 5 6 6 6 6 6 6 6 6 6557100 10440000 150640 11127000 7433400 10813000 5728700 4206000 4663000 4491700 7476900 6106400 9744300 696290 11298000 7093800 10886000 5867100 4618400 4890300 4375000 7125600 4 4 4 4 4 4 4 4 4 4 4 2661700 4244300 18773 4189600 3323000 2631200 3123600 2260400 2279000 2505400 3327100 2478400 3960200 245460 4254700 3182300 2768300 3152700 2324200 2392700 2436800 3177100 2 2 1 2 2 2 2 2 2 2 2 849710000 708700000 141010000 19169 468 17611 97841;97842;97843;97844;97845 118497;118498;118499;118500;118501;118502 118499 6 TLYFLPR Unmodified 908.51199 0.51198846 587 P09884 POLA1 DNA polymerase alpha catalytic subunit yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 60.902 60.556 2 0.022593 20332 20211116_3430_TMUAki_TMT10x_P_F3 81.635 61.353 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19170 587 17612 97846;97847 118503;118504 118503 2 TLYGFGG Unmodified 713.33844 0.33844077 1366 P62805 HIST1H4A Histone H4 yes yes 0 0 0 0 By MS/MS By MS/MS 5.73 1.93 4 3 4 4 6 10 32 4 32 35 42.148 42.21 1;2 0.0010619 21025 20211116_3430_TMUAki_TMT10x_P_F3 129.52 123.07 119520000 174950000 5992000 238760000 229170000 259820000 159100000 199960000 216550000 163700000 186980000 111320000 163480000 14495000 239390000 218220000 262050000 166820000 205240000 216740000 161370000 181290000 57 58 21 58 58 58 58 58 58 58 58 81587000 117280000 5940900 165200000 197310000 233600000 131970000 144670000 155070000 117220000 132710000 75998000 109620000 12480000 166170000 187820000 231760000 138000000 150760000 155950000 115620000 128710000 33 33 15 33 33 33 33 33 33 33 33 37934000 57662000 51082 73568000 31854000 26226000 27123000 55289000 61487000 46479000 54270000 35317000 53864000 2014800 73220000 30400000 30291000 28823000 54484000 60793000 45756000 52576000 24 25 6 25 25 25 25 25 25 25 25 199760000000 133210000000 66551000000 19171 1366 17613 97848;97849;97850;97851;97852;97853;97854;97855;97856;97857;97858;97859;97860;97861;97862;97863;97864;97865;97866;97867;97868;97869;97870;97871;97872;97873;97874;97875;97876;97877;97878;97879;97880;97881;97882;97883;97884;97885;97886;97887;97888;97889;97890;97891;97892;97893;97894;97895;97896;97897;97898;97899;97900;97901;97902;97903;97904;97905;97906;97907;97908;97909;97910;97911;97912;97913;97914 118505;118506;118507;118508;118509;118510;118511;118512;118513;118514;118515;118516;118517;118518;118519;118520;118521;118522;118523;118524;118525;118526;118527;118528;118529;118530;118531;118532;118533;118534;118535;118536;118537;118538;118539;118540;118541;118542;118543;118544;118545;118546;118547;118548;118549;118550;118551;118552;118553;118554;118555;118556;118557;118558;118559;118560;118561;118562;118563 118508 59 TLYISDSDKR Unmodified 1196.6037 0.60371659 1528 Q06330;Q06330-5;Q06330-4;Q06330-6;Q06330-7;Q06330-3;Q06330-2 RBPJ Recombining binding protein suppressor of hairless yes no 0 0 0 1 By MS/MS 5 0 1 1 36.666 36.828 3 0.083056 8250 20211116_3444_TMUAki_TMT10x_S_F5 42.629 22.842 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19172 1528 17614 97915 118564 118564 1 TLYNNQPIDFLKK Unmodified 1592.8562 0.85624288 1666 Q13867 BLMH Bleomycin hydrolase yes yes 0 0 0 1 By MS/MS 2 0 1 1 62.864 62.627 3 0.010936 19473 20211116_3440_TMUAki_TMT10x_S_F2 61.167 48.049 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19173 1666 17615 97916 118565 118565 1 TLYTHIVTDIK Unmodified 1302.7184 0.71835242 2980 Q9NVU7;Q9NVU7-2 SDAD1 Protein SDA1 homolog yes no 0 0 0 0 By MS/MS 7 0 1 1 52.305 52.998 3 0.063262 16512 20211116_3435_TMUAki_TMT10x_P_F7 44.564 26.339 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19174 2980 17616 97917 118566 118566 1 TLYTQIR Unmodified 893.49707 0.49706667 1592 Q13098;Q13098-5;Q13098-7;Q13098-6 GPS1 COP9 signalosome complex subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 37.22 37.629 2 0.0065775 9045 20211116_3436_TMUAki_TMT10x_P_F8 102.77 62.67 1559700 2419600 20638 2657300 3099000 2520800 1715700 1891400 2028000 1710600 2120500 1452400 2258600 170100 2692000 2938000 2562300 1822300 1949400 2052700 1678100 2042700 3 3 3 3 3 3 3 3 3 3 3 1031800 1525900 20038 1712000 2566700 2091200 1230200 1165000 1226600 1020200 1339900 960880 1424500 125720 1739100 2428700 2086200 1317600 1226900 1252100 1002300 1289000 2 2 2 2 2 2 2 2 2 2 2 527870 893650 600.07 945230 532350 429640 485550 726320 801320 690440 780600 491500 834060 44386 952940 509300 476160 504740 722420 800650 675800 753660 1 1 1 1 1 1 1 1 1 1 1 67593000 51185000 16408000 19175 1592 17617 97918;97919;97920 118567;118568;118569 118568 3 TLYVEEVVPNVIEPSFGLGR Unmodified 2217.1681 0.16813455 1001 P41250 GARS Glycine--tRNA ligase yes yes 0 0 0 0 By MS/MS By MS/MS 5.24 1.11 1 3 7 3 3 9 8 79.697 79.699 2;3 1.1292E-71 25595 20211116_3434_TMUAki_TMT10x_P_F6 292.8 259.71 20513000 35175000 871360 34706000 24603000 37320000 28472000 20190000 19395000 22272000 27987000 19105000 32820000 2467800 35478000 23734000 37473000 28397000 21454000 20433000 21666000 26732000 13 13 8 13 13 13 13 13 13 13 13 15817000 27134000 644180 26336000 17550000 31952000 21263000 16064000 14998000 17463000 22109000 14732000 25316000 1860300 27008000 16955000 31847000 21180000 17177000 15785000 16998000 21107000 10 10 6 10 10 10 10 10 10 10 10 4695400 8040600 227170 8369700 7053900 5367900 7208400 4125600 4396800 4808800 5878200 4373400 7504000 607500 8470300 6779500 5625700 7216600 4277700 4648600 4668400 5624600 3 3 2 3 3 3 3 3 3 3 3 11755000000 6809900000 4945300000 19176 1001 17618 97921;97922;97923;97924;97925;97926;97927;97928;97929;97930;97931;97932;97933;97934;97935;97936;97937 118570;118571;118572;118573;118574;118575;118576;118577;118578;118579;118580;118581;118582;118583;118584;118585;118586 118577 17 TLYVGNLSR Unmodified 1021.5556 0.55564418 1476;888 Q01085;Q01085-2;P31483;P31483-2;P31483-3 TIAL1;TIA1 Nucleolysin TIAR;Nucleolysin TIA-1 isoform p40 no no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 44.448 44.511 2 0.0001815 11351 20211116_3447_TMUAki_TMT10x_S_F8 135.86 87.828 2524500 4135600 17826 4608500 5359800 5019800 3125100 4259100 4408800 3351900 4200500 2350700 3860800 263890 4674100 5084000 5071400 3326500 4341500 4421600 3311000 4058600 2 2 1 2 2 2 2 2 2 2 2 1582200 2431000 17826 2774700 4416800 4229400 2338800 2587400 2538700 1999500 2526500 1473300 2269700 187490 2828200 4183800 4182000 2487200 2695900 2573500 1977000 2437600 1 1 1 1 1 1 1 1 1 1 1 942280 1704600 0 1833700 942990 790450 786350 1671700 1870100 1352300 1674100 877350 1591100 76397 1846000 900130 889410 839370 1645600 1848100 1333900 1621000 1 1 0 1 1 1 1 1 1 1 1 180400000 79095000 101300000 19177 1476;888 17619 97938;97939 118587;118588 118588 2 TMADSSYNLEVQNILSFLK Oxidation (M) 2188.0722 0.07218525 2406 Q96AC1;Q96AC1-2;Q96AC1-3 FERMT2 Fermitin family homolog 2 yes no 0 0 1 0 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 81.467 81.485 3 1.5972E-17 27005 20211116_3436_TMUAki_TMT10x_P_F8 141.07 130.28 1501000 2442400 0 2290800 1872300 3043800 2081200 1902200 1962000 2112900 2185900 1397400 2278400 106750 2358900 1799000 3028700 2096500 1997900 2009100 2054900 2101800 2 2 0 2 2 2 2 2 2 2 2 916400 1488500 0 1281800 978750 2217900 1125600 1112400 1302900 1264900 1276600 853100 1388200 57756 1336300 940930 2176900 1139600 1191400 1316800 1229100 1232300 1 1 0 1 1 1 1 1 1 1 1 584600 953850 0 1008900 893590 825910 955590 789740 659030 848030 909320 544290 890250 48994 1022600 858120 851860 956870 806530 692310 825830 869440 1 1 0 1 1 1 1 1 1 1 1 762710000 560810000 201900000 19178 2406 17620 97940;97941;97942 118589;118590 118589 2731 2 TMATFPVAPR Oxidation (M) 1105.559 0.559015 2162 Q8IY37 DHX37 Probable ATP-dependent RNA helicase DHX37 yes yes 0 0 1 0 By MS/MS By MS/MS 8 0 2 1 1 39.085 39.384 2 0.01118 9215 20211116_3447_TMUAki_TMT10x_S_F8 71.708 32.165 1001900 1679100 10944 1871700 1539100 1514900 1034700 1423100 1632100 1189800 1575600 932900 1567500 94084 1890500 1463300 1563200 1094400 1444600 1632300 1171700 1521700 3 3 2 3 3 3 3 3 3 3 3 408250 635820 0 718380 1024500 1030900 554970 520630 595980 441460 630080 380070 593600 35773 731710 970070 1019500 588750 552720 605720 434420 606760 1 1 0 1 1 1 1 1 1 1 1 593650 1043300 10944 1153300 514670 483970 479690 902510 1036200 748380 945490 552830 973930 58311 1158800 493270 543730 505620 891870 1026600 737260 914890 2 2 2 2 2 2 2 2 2 2 2 68017000 41437000 26581000 19179 2162 17621 97943;97944 118591;118592;118593 118592 2616 3 TMAVLQIEAEKAELR Oxidation (M) 1716.908 0.90802046 231 O43674;O43674-2 NDUFB5 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial yes no 0 0 1 1 By MS/MS By MS/MS 4.75 0.829 2 1 1 2 2 56.956 57.036 3 0.00012773 17447 20211116_3433_TMUAki_TMT10x_P_F5 81.526 71.604 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19180 231 17622 97945;97946;97947;97948 118594;118595;118596;118597 118595 183 4 TMCPLLSMKPGEYSYFSPR 2 Oxidation (M) 2295.0374 0.037396423 1746 Q15003;Q15003-2 NCAPH Condensin complex subunit 2 yes no 0 0 2 1 By MS/MS 2 0 1 1 59.117 58.86 3 0.049322 19167 20211116_3429_TMUAki_TMT10x_P_F2 40.952 33.148 2417800 3973600 46282 3428800 2600500 5974500 2872800 4318500 3994700 3958800 3436100 2251600 3705800 246150 3574500 2503100 5892200 2934500 4463600 3995000 3881200 3332000 1 1 1 1 1 1 1 1 1 1 1 2417800 3973600 46282 3428800 2600500 5974500 2872800 4318500 3994700 3958800 3436100 2251600 3705800 246150 3574500 2503100 5892200 2934500 4463600 3995000 3881200 3332000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 501760000 501760000 0 19181 1746 17623 97949 118598 118598 2354;2355 1 TMDEDIVIQQDDEIR Oxidation (M) 1834.8255 0.82547262 1359 P62487 POLR2G DNA-directed RNA polymerase II subunit RPB7 yes yes 0 0 1 0 By MS/MS 1 0 1 1 49.05 48.799 3 3.6371E-10 15585 20211116_3439_TMUAki_TMT10x_S_F1 118.51 109.2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19182 1359 17624 97950 118599 118599 1823 1 TMGFCYQILTEPNADPR Oxidation (M) 2027.9081 0.90809681 425 O95373 IPO7 Importin-7 yes yes 0 0 1 0 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 62.083 62.137 3 0.00025881 18474 20211116_3444_TMUAki_TMT10x_S_F5 71.697 59.142 11380000 19589000 57551 17579000 15463000 22929000 13818000 17273000 14683000 15481000 16160000 10596000 18271000 1002900 18155000 14786000 22901000 14129000 17794000 14952000 15193000 15543000 5 5 3 5 5 5 5 5 5 5 5 7417800 12165000 97.601 11049000 10631000 18438000 9906200 10586000 9066000 9772500 10098000 6906300 11347000 608750 11461000 10172000 18151000 10060000 11135000 9296500 9577900 9709600 3 3 1 3 3 3 3 3 3 3 3 3961700 7424800 57453 6529500 4832100 4490600 3911700 6687200 5616700 5708300 6061600 3689200 6924700 394190 6693900 4613600 4749900 4068700 6658900 5655200 5615400 5833600 2 2 2 2 2 2 2 2 2 2 2 1152100000 554240000 597840000 19183 425 17625 97951;97952;97953 118600;118601;118602;118603;118604;118605 118603 320 6 TMGFCYQILTEPNADPR Unmodified 2011.9132 0.91318219 425 O95373 IPO7 Importin-7 yes yes 0 0 0 0 By MS/MS 6 0 1 1 69.326 69.241 3 0.00014737 21745 20211116_3445_TMUAki_TMT10x_S_F6 73.464 59.207 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19184 425 17625 97954 118606 118606 1 TMIISPER Oxidation (M) 961.49027 0.49026674 345 O75533;O75533-2 SF3B1 Splicing factor 3B subunit 1 yes no 0 0 1 0 By MS/MS 5 0 1 1 32.663 32.827 2 0.074026 6649 20211116_3444_TMUAki_TMT10x_S_F5 58.596 41.21 135230 181120 0 207750 125960 111960 133110 120700 119190 100540 185050 125890 169100 7658.8 208620 120740 120160 134220 121680 124200 99019 176470 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 135230 181120 0 207750 125960 111960 133110 120700 119190 100540 185050 125890 169100 7658.8 208620 120740 120160 134220 121680 124200 99019 176470 1 1 0 1 1 1 1 1 1 1 1 4401300 0 4401300 19185 345 17626 97955 118607 118607 257 1 TMLEDLGMDDEGDDDPVPLPNVNAAILKK 2 Oxidation (M) 3156.4843 0.48426124 1402 P63208;P63208-2 SKP1 S-phase kinase-associated protein 1 yes no 0 0 2 1 By matching By MS/MS 4.5 0.957 1 2 2 1 2 4 76.943 76.914 4;5 1.1113E-09 25845 20211116_3442_TMUAki_TMT10x_S_F4 93.966 83.996 6157600 10684000 63993 8298400 9333700 8998300 7716500 8843800 7194400 8144400 9057600 5733700 9960500 606370 8644700 8912300 9120200 7895600 8978600 7408000 7983000 8679900 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6157600 10684000 63993 8298400 9333700 8998300 7716500 8843800 7194400 8144400 9057600 5733700 9960500 606370 8644700 8912300 9120200 7895600 8978600 7408000 7983000 8679900 3 3 2 3 3 3 3 3 3 3 3 3802400000 1362100000 2440200000 19186 1402 17627 97956;97957;97958;97959;97960;97961 118608;118609;118610 118609 1879;1880 3 TMLELINQLDGFDPR Unmodified 1760.8767 0.87672033 945 P35998;P35998-2 PSMC2 26S protease regulatory subunit 7 yes no 0 0 0 0 By MS/MS By MS/MS 5.38 1.58 1 2 1 2 1 1 3 5 81.394 81.392 3 7.8638E-07 26688 20211116_3445_TMUAki_TMT10x_S_F6 111.74 98.54 3673900 5728400 35546 6163400 4459600 5721500 4483100 3409000 3406300 3961700 4862700 3420900 5346900 332670 6250400 4277800 5804000 4512800 3599300 3564100 3846500 4645800 6 6 4 6 6 6 6 6 6 6 6 1933400 3022300 12086 3216400 2282200 3648000 2320000 1784700 1737000 2293600 2559500 1800200 2820800 164720 3274000 2189200 3647900 2333200 1923800 1821800 2219100 2443600 2 2 1 2 2 2 2 2 2 2 2 1740500 2706200 23460 2947100 2177400 2073500 2163100 1624300 1669300 1668200 2303200 1620700 2526000 167950 2976400 2088600 2156100 2179600 1675500 1742300 1627400 2202200 4 4 3 4 4 4 4 4 4 4 4 1623000000 670480000 952570000 19187 945 17628 97962;97963;97964;97965;97966;97967;97968;97969 118611;118612;118613;118614;118615;118616 118616 6 TMLELLNQLDGFDSR Oxidation (M) 1766.8509 0.85089951 1336 P62191;P62191-2 PSMC1 26S protease regulatory subunit 4 yes no 0 0 1 0 By MS/MS By matching 4 0 2 1 1 77.773 77.757 2 0.0022424 25804 20211116_3431_TMUAki_TMT10x_P_F4 73.082 57.51 2379100 3563800 0 3029700 2178800 4480100 2719000 2738500 2853000 2943600 2877500 2215000 3323400 178270 3150200 2101700 4435400 2733900 2878400 2897500 2866400 2775100 1 1 0 1 1 1 1 1 1 1 1 2379100 3563800 0 3029700 2178800 4480100 2719000 2738500 2853000 2943600 2877500 2215000 3323400 178270 3150200 2101700 4435400 2733900 2878400 2897500 2866400 2775100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 797890000 405010000 392870000 19188 1336 17629 97970;97971 118617 118617 1790 1 TMLELLNQLDGFDSR Unmodified 1750.856 0.85598488 1336 P62191;P62191-2 PSMC1 26S protease regulatory subunit 4 yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 81.531 81.542 2;3 1.5165E-29 26737 20211116_3445_TMUAki_TMT10x_S_F6 202.72 179.12 2159700 3654500 0 3698600 2501000 2591100 2681700 1585300 1377400 2005000 2749200 2010500 3410200 132360 3753500 2399300 2685400 2670300 1675200 1507000 1940900 2609600 3 3 0 3 3 3 3 3 3 3 3 667940 1089400 0 993550 622130 1021100 699080 478040 499650 570380 836150 621790 1016100 38120 1020800 597380 1026300 698910 516200 528970 553260 796190 1 1 0 1 1 1 1 1 1 1 1 1491700 2565200 0 2705100 1878900 1570000 1982600 1107300 877750 1434700 1913100 1388700 2394100 94241 2732800 1801900 1659100 1971400 1158900 978050 1387700 1813400 2 2 0 2 2 2 2 2 2 2 2 558310000 51974000 506330000 19189 1336 17629 97972;97973;97974 118618;118619;118620 118619 3 TMLELLNQLDGFEATK Unmodified 1821.9183 0.91825079 1337 P62195;P62195-2 PSMC5 26S protease regulatory subunit 8 yes no 0 0 0 0 By MS/MS By MS/MS 5.83 1.57 1 2 2 2 3 2 5 7 81.577 81.58 2;3 1.3796E-43 28897 20211116_3446_TMUAki_TMT10x_S_F7 235.71 216.98 27767000 43170000 173290 46532000 31584000 28258000 33419000 12153000 10725000 14625000 28077000 25854000 40295000 2412500 46960000 30334000 29553000 33100000 13243000 12520000 14182000 26548000 12 12 6 12 12 12 12 12 12 12 12 12427000 19532000 65174 20101000 11542000 15859000 13812000 5820700 4713200 7015500 12377000 11571000 18228000 1057200 20403000 11126000 16192000 13610000 6460500 5464900 6802500 11702000 5 5 3 5 5 5 5 5 5 5 5 15340000 23638000 108110 26431000 20042000 12399000 19607000 6332300 6012200 7609800 15701000 14283000 22067000 1355300 26557000 19208000 13361000 19490000 6782700 7055000 7379500 14846000 7 7 3 7 7 7 7 7 7 7 7 3801100000 1596400000 2204700000 19190 1337 17630 97975;97976;97977;97978;97979;97980;97981;97982;97983;97984;97985;97986 118621;118622;118623;118624;118625;118626;118627;118628;118629;118630;118631;118632;118633 118630 13 TMLELLNQLDGFEATK Oxidation (M) 1837.9132 0.91316541 1337 P62195;P62195-2 PSMC5 26S protease regulatory subunit 8 yes no 0 0 1 0 By MS/MS By matching 5.25 0.829 1 1 2 3 1 78.419 78.398 3 5.2659E-05 26039 20211116_3431_TMUAki_TMT10x_P_F4 83.751 59.213 3928700 6574700 42346 5249000 3655900 7748600 4133300 4475900 4775000 4198900 4976300 3658300 6129900 361360 5485900 3520000 7666100 4187500 4707700 4836800 4112300 4794200 1 1 1 1 1 1 1 1 1 1 1 3928700 6574700 42346 5249000 3655900 7748600 4133300 4475900 4775000 4198900 4976300 3658300 6129900 361360 5485900 3520000 7666100 4187500 4707700 4836800 4112300 4794200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1354900000 837810000 517100000 19191 1337 17630 97987;97988;97989;97990 118634;118635;118636 118634 1794 3 TMLELLNQLDGFQPNTQVK Unmodified 2188.1198 0.11980414 711 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 0 0 By MS/MS By MS/MS 5.86 2.85 1 1 1 4 3 4 80.97 80.968 3;4 2.4965E-22 26180 20211116_3447_TMUAki_TMT10x_S_F8 149.52 129.14 11688000 18200000 282340 18589000 12236000 12295000 13948000 6068700 5292000 7385200 12251000 10884000 16984000 1178800 18843000 11789000 12774000 13790000 6523800 6009400 7158500 11602000 5 5 4 5 5 5 5 5 5 5 5 7887300 11509000 95226 12283000 7077900 8588300 8428800 3202100 2429900 3786500 7462900 7344100 10742000 670310 12421000 6822400 8856100 8293400 3545000 2913100 3674000 7043400 2 2 1 2 2 2 2 2 2 2 2 3800700 6690900 187110 6306100 5158400 3706700 5518900 2866600 2862200 3598700 4787700 3540200 6241900 508500 6421600 4966500 3917600 5496900 2978800 3096400 3484500 4558900 3 3 3 3 3 3 3 3 3 3 3 3695000000 2517900000 1177100000 19192 711 17631 97991;97992;97993;97994;97995;97996;97997 118637;118638;118639;118640;118641;118642 118642 6 TMLELLNQLDGFQPNTQVK Oxidation (M) 2204.1147 0.11471877 711 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 1 0 By MS/MS By MS/MS 7 0 3 2 1 77.836 77.904 2;3 2.1713E-08 27389 20211116_3446_TMUAki_TMT10x_S_F7 104.88 88.197 5169300 8224900 82717 6734300 5862500 8590400 6877200 6740000 7060700 6829900 6579300 4813300 7669100 455800 7003100 5647900 8595300 6928400 6948900 7157900 6666700 6361700 2 2 1 2 2 2 2 2 2 2 2 2467600 3816500 0 3241700 2216900 4933400 3244400 2915900 3126900 3196900 2941800 2297100 3559000 141510 3373000 2147700 4876100 3233600 3074900 3179700 3110700 2843600 1 1 0 1 1 1 1 1 1 1 1 2701700 4408400 82717 3492600 3645600 3657100 3632800 3824100 3933700 3633000 3637500 2516200 4110100 314300 3630100 3500200 3719200 3694900 3873900 3978200 3556100 3518100 1 1 1 1 1 1 1 1 1 1 1 1783600000 778020000 1005600000 19193 711 17631 97998;97999;98000 118643;118644;118645 118645 804 3 TMLESAGGLIQTAR Unmodified 1446.7501 0.75006325 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 58.471 58.833 2 1.8124E-13 18888 20211116_3435_TMUAki_TMT10x_P_F7 128.36 79.568 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19194 3293 17632 98001;98002 118646;118647 118646 2 TMLITHMQDLQEVTQDLHYENFR 2 Oxidation (M) 2893.3375 0.33747785 1752 Q15019;Q15019-2;Q15019-3 SEPT2 Septin-2 yes no 0 0 2 0 By MS/MS By MS/MS 4.86 0.833 3 2 2 3 4 59.797 59.834 4 4.5034E-11 17538 20211116_3434_TMUAki_TMT10x_P_F6 105.46 98.269 49285000 73393000 612830 83867000 63252000 81616000 54584000 57335000 55114000 57130000 62422000 45885000 68523000 3606600 84785000 60402000 82739000 55836000 59514000 56306000 55804000 59990000 11 11 3 11 11 11 11 11 11 11 11 33151000 47237000 174470 54668000 47518000 63268000 37828000 37168000 34441000 36343000 40876000 30861000 44105000 2135700 55374000 45266000 63336000 38772000 39083000 35414000 35529000 39232000 6 6 1 6 6 6 6 6 6 6 6 16133000 26156000 438360 29199000 15733000 18349000 16756000 20167000 20674000 20786000 21547000 15025000 24418000 1470900 29410000 15136000 19402000 17064000 20431000 20891000 20276000 20758000 5 5 2 5 5 5 5 5 5 5 5 9469300000 4327200000 5142100000 19195 1752 17633 98003;98004;98005;98006;98007;98008;98009 118648;118649;118650;118651;118652;118653;118654;118655;118656;118657;118658 118653 2363;2364 11 TMLITHMQDLQEVTQDLHYENFR Oxidation (M) 2877.3426 0.34256323 1752 Q15019;Q15019-2;Q15019-3 SEPT2 Septin-2 yes no 0 0 1 0 By MS/MS By MS/MS 6 0.756 2 3 2 3 4 66.368 66.486 4 9.6659E-28 19217 20211116_3434_TMUAki_TMT10x_P_F6 162.43 153.72 21769000 38065000 287540 36152000 27349000 33545000 26795000 23982000 22301000 23447000 28354000 20270000 35512000 2007400 36977000 26218000 34120000 27070000 24850000 23099000 22922000 27165000 10 10 5 10 10 10 10 10 10 10 10 9598700 16239000 101420 15297000 10609000 18928000 11856000 9858000 9264200 9867000 11944000 8937900 15150000 889670 15726000 10209000 18855000 11881000 10481000 9633200 9636200 11439000 4 4 3 4 4 4 4 4 4 4 4 12170000 21826000 186110 20855000 16741000 14617000 14939000 14124000 13037000 13580000 16410000 11332000 20362000 1117700 21251000 16009000 15265000 15189000 14369000 13466000 13286000 15726000 6 6 2 6 6 6 6 6 6 6 6 6270600000 2623500000 3647100000 19196 1752 17633 98010;98011;98012;98013;98014;98015;98016 118659;118660;118661;118662;118663;118664;118665;118666;118667;118668 118661 2363;2364 10 TMLITHMQDLQEVTQDLHYENFR Unmodified 2861.3476 0.3476486 1752 Q15019;Q15019-2;Q15019-3 SEPT2 Septin-2 yes no 0 0 0 0 By matching By MS/MS 6.6 1.02 1 1 2 1 1 4 74.337 74.37 4 8.5034E-21 23536 20211116_3447_TMUAki_TMT10x_S_F8 148.89 136.76 25459000 43811000 359200 41906000 33183000 26878000 31501000 22944000 20827000 24174000 31053000 23707000 40873000 2531900 42661000 31796000 28220000 31710000 23563000 22018000 23559000 29639000 10 10 9 10 10 10 10 10 10 10 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25459000 43811000 359200 41906000 33183000 26878000 31501000 22944000 20827000 24174000 31053000 23707000 40873000 2531900 42661000 31796000 28220000 31710000 23563000 22018000 23559000 29639000 10 10 9 10 10 10 10 10 10 10 10 2942100000 612460000 2329600000 19197 1752 17633 98017;98018;98019;98020;98021 118669;118670;118671;118672;118673;118674;118675;118676;118677;118678 118677 10 TMMACGGSIQTSVNALSADVLGR 2 Oxidation (M) 2370.0978 0.097764849 2609 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 2 0 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 70.005 70.216 3 1.1952E-20 23671 20211116_3435_TMUAki_TMT10x_P_F7 142.93 132.46 13722000 23329000 682840 23502000 15199000 21218000 16497000 19672000 16892000 16456000 18522000 12781000 21769000 1765500 23930000 14646000 21721000 16678000 19982000 17225000 16204000 17817000 6 6 5 6 6 6 6 6 6 6 6 4778300 6892100 247920 7095100 4032800 8702200 5042200 6835700 5856100 5280100 5944500 4450900 6431800 616770 7247800 3907200 8724100 5086900 6997700 5925100 5220900 5731700 2 2 2 2 2 2 2 2 2 2 2 8943300 16437000 434920 16407000 11167000 12516000 11455000 12836000 11036000 11176000 12577000 8330100 15338000 1148700 16682000 10739000 12997000 11591000 12985000 11300000 10983000 12085000 4 4 3 4 4 4 4 4 4 4 4 6107500000 2790500000 3317000000 19198 2609 17634 98022;98023;98024 118679;118680;118681;118682;118683;118684 118680 2853;2854 6 TMMACGGSIQTSVNALSADVLGR Oxidation (M) 2354.1029 0.10285023 2609 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 1 0 By MS/MS By MS/MS 7.5 0.5 3 3 2 4 74.983 75.033 2;3 4.5637E-82 23845 20211116_3447_TMUAki_TMT10x_S_F8 260.08 244.92 11844000 21288000 211650 17148000 13107000 18868000 15089000 13705000 11807000 13726000 16288000 11030000 19849000 1052400 17812000 12629000 19000000 15101000 14195000 12315000 13404000 15574000 8 8 6 8 8 8 8 8 8 8 8 5968000 10150000 22272 8487300 6014100 12471000 7651100 7732300 6291400 7052600 8108000 5556800 9465200 495320 8835400 5807800 12353000 7633200 8080500 6524300 6915900 7765200 4 4 3 4 4 4 4 4 4 4 4 5876300 11138000 189380 8660500 7093000 6397100 7438200 5972300 5516100 6673200 8180100 5472800 10384000 557080 8976300 6821300 6647000 7467400 6114600 5790400 6488500 7808600 4 4 3 4 4 4 4 4 4 4 4 7368600000 3740900000 3627700000 19199 2609 17634 98025;98026;98027;98028;98029;98030 118685;118686;118687;118688;118689;118690;118691;118692;118693;118694 118694 2853;2854 10 TMMACGGSIQTSVNALSADVLGR Unmodified 2338.1079 0.1079356 2609 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 By MS/MS 1 0 1 1 77.912 77.859 3 9.6939E-16 27365 20211116_3439_TMUAki_TMT10x_S_F1 134.29 112.45 1320700 2316300 42440 2369400 1732200 1752300 2086200 1422900 1397000 1380100 1950000 1230100 2161600 154810 2404200 1672400 1815800 2076200 1462100 1471000 1349700 1864000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1320700 2316300 42440 2369400 1732200 1752300 2086200 1422900 1397000 1380100 1950000 1230100 2161600 154810 2404200 1672400 1815800 2076200 1462100 1471000 1349700 1864000 1 1 1 1 1 1 1 1 1 1 1 684120000 0 684120000 19200 2609 17634 98031 118695 118695 1 TMNLNPMILTNILSSPYFK Oxidation (M) 2212.1272 0.12719771 1949 Q5VTL8;Q5VTL8-2 PRPF38B Pre-mRNA-splicing factor 38B yes no 0 0 1 0 By MS/MS 6 0 1 1 81.386 81.392 3 1.2792E-05 26690 20211116_3445_TMUAki_TMT10x_S_F6 81.807 62.203 1078500 1659500 27569 1699400 1275800 1006800 1424100 580540 544950 642530 1124900 1004400 1548600 117870 1720500 1228700 1058800 1409500 613620 613440 624980 1067200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1078500 1659500 27569 1699400 1275800 1006800 1424100 580540 544950 642530 1124900 1004400 1548600 117870 1720500 1228700 1058800 1409500 613620 613440 624980 1067200 1 1 1 1 1 1 1 1 1 1 1 296130000 0 296130000 19201 1949 17635 98032 118696 118696 2530 1 TMPILSPGNTQTLTELELK Oxidation (M) 2101.0977 0.097671719 2701 Q9BW27;Q9BW27-3;Q9BW27-2 NUP85 Nuclear pore complex protein Nup85 yes no 0 0 1 0 By MS/MS 6 0 1 1 73.573 73.499 3 2.8992E-05 23476 20211116_3445_TMUAki_TMT10x_S_F6 81.723 63.806 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19202 2701 17636 98033 118697 118697 2900 1 TMPPTKPQPPARPPPPVLPANR Oxidation (M) 2374.2944 0.29435489 2301 Q8WUM4;Q8WUM4-2 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 1 2 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 38.402 38.464 4 1.0049E-10 8926 20211116_3444_TMUAki_TMT10x_S_F5 115.38 101.93 3775200 5936800 26200 7454200 9642400 9890300 5324100 6728000 7697200 5513700 5925400 3514800 5545300 355790 7533800 9134400 9854200 5699700 6963800 7663900 5435000 5770900 4 4 2 4 4 4 4 4 4 4 4 3455600 5419800 18768 6801000 9415600 9665500 5141400 6104300 7018300 5021800 5414600 3217100 5062400 323660 6883400 8917700 9589900 5496800 6353800 7000900 4949200 5272900 3 3 1 3 3 3 3 3 3 3 3 319640 517010 7432.2 653200 226750 224750 182700 623620 678950 491850 510810 297670 482930 32126 650350 216760 264350 202980 609980 663030 485800 497960 1 1 1 1 1 1 1 1 1 1 1 775580000 687930000 87656000 19203 2301 17637 98034;98035;98036 118698;118699;118700;118701 118701 2665 4 TMQGEGPQLLLSEAVSR Oxidation (M) 1830.9146 0.9145624 1047 P46379;P46379-2;P46379-3 BAG6 Large proline-rich protein BAG6 yes no 0 0 1 0 By MS/MS 4 0 1 1 62.259 62.122 3 0.0091301 19833 20211116_3442_TMUAki_TMT10x_S_F4 52.045 30.488 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19204 1047 17638 98037 118702 118702 1351 1 TMTDVVGNPEEERR Oxidation (M) 1647.7522 0.75224809 2475 Q96GM5;Q96GM5-2 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes no 0 0 1 1 By MS/MS 1.5 0.5 1 1 2 29.648 29.533 3 0.0012297 7392 20211116_3429_TMUAki_TMT10x_P_F2 68.044 56.832 78337 125760 0 109920 157410 152110 84910 78748 98852 83755 123990 72937 117290 7297.5 113880 149090 150710 90350 83918 100850 81593 118830 1 1 0 1 1 1 1 1 1 1 1 78337 125760 0 109920 157410 152110 84910 78748 98852 83755 123990 72937 117290 7297.5 113880 149090 150710 90350 83918 100850 81593 118830 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12136000 12136000 0 19205 2475 17639 98038;98039 118703 118703 2767 1 TMTELEIDMNQR 2 Oxidation (M) 1511.6596 0.65959326 1036 P45974;P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 2 0 By MS/MS By MS/MS 1.9 0.831 4 3 3 6 4 36.632 36.549 2;3 0.00027503 10647 20211116_3439_TMUAki_TMT10x_S_F1 83.226 69.068 957020 1505800 3715.8 1628500 1827200 1910300 1174300 1118300 1294000 1002600 1420500 891050 1405500 87291 1656800 1735400 1910900 1229000 1173500 1315700 983930 1366400 5 5 2 5 5 5 5 5 5 5 5 750270 1129500 1042.1 1228100 1599800 1697200 931270 846110 1006100 762190 1075400 698550 1054300 70755 1252900 1516900 1680900 981900 900710 1022700 747850 1035300 3 3 1 3 3 3 3 3 3 3 3 206750 376290 2673.8 400380 227440 213130 243010 272210 287940 240380 345090 192500 351210 16536 403950 218410 230000 247080 272830 292990 236080 331120 2 2 1 2 2 2 2 2 2 2 2 204680000 165690000 38989000 19206 1036 17640 98040;98041;98042;98043;98044;98045;98046;98047;98048;98049 118704;118705;118706;118707;118708;118709;118710 118708 1341;1342 7 TMTELEIDMNQR Oxidation (M) 1495.6647 0.66467864 1036 P45974;P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 1 0 By MS/MS 3 0 1 1 45.489 45.506 3 0.0070206 14171 20211116_3430_TMUAki_TMT10x_P_F3 60.301 38.744 900630 1411300 0 1399200 1866400 2433000 1352900 1781000 1378900 1279600 1399900 838380 1316800 62561 1443700 1775000 2400200 1400000 1828700 1402400 1270400 1349800 1 1 0 1 1 1 1 1 1 1 1 900630 1411300 0 1399200 1866400 2433000 1352900 1781000 1378900 1279600 1399900 838380 1316800 62561 1443700 1775000 2400200 1400000 1828700 1402400 1270400 1349800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 205510000 205510000 0 19207 1036 17640 98050 118711 118711 1341;1342 1 TMTVEVEGSTVNDQQLEEVVLPSEEEGGGAGTK Oxidation (M) 3434.5883 0.58826862 1501 Q02952;Q02952-3;Q02952-2 AKAP12 A-kinase anchor protein 12 yes no 0 0 1 0 By MS/MS 1 0 1 1 68.828 68.828 4 0.00145 21734 20211116_3428_TMUAki_TMT10x_P_F1 50.711 40.741 2770700 4478100 0 4535300 2632100 4400300 3397100 1882300 1975100 2290700 3114800 2579600 4178800 201850 4620700 2541300 4434400 3361800 2053100 2112000 2220400 2969400 1 1 0 1 1 1 1 1 1 1 1 2770700 4478100 0 4535300 2632100 4400300 3397100 1882300 1975100 2290700 3114800 2579600 4178800 201850 4620700 2541300 4434400 3361800 2053100 2112000 2220400 2969400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1640300000 1640300000 0 19208 1501 17641 98051 118712 118712 2038 1 TNCNVAVINVGAPAAGMNAAVR Unmodified 2169.0783 0.078290456 1487 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 56.205 56.054 3 6.9832E-15 16477 20211116_3428_TMUAki_TMT10x_P_F1 137.86 118.53 6069300 9749500 164410 11879000 7386300 7616300 6302200 5021000 4580600 4875200 7067800 5652100 9105300 648970 11905000 7063300 7963600 6396000 5231600 4823500 4767300 6741000 4 4 3 4 4 4 4 4 4 4 4 3019700 4555200 105960 5444700 4290800 5443100 3591000 2448800 2188600 2456200 3266100 2812400 4253800 366910 5491600 4103100 5477900 3635700 2641100 2326100 2398500 3117300 2 2 2 2 2 2 2 2 2 2 2 3049500 5194300 58454 6434600 3095400 2173200 2711200 2572200 2392000 2419000 3801700 2839600 4851500 282070 6413100 2960200 2485700 2760300 2590500 2497400 2368800 3623700 2 2 1 2 2 2 2 2 2 2 2 726260000 421540000 304720000 19209 1487 17642 98052;98053 118713;118714;118715;118716 118714 4 TNEAQAIETAR Unmodified 1202.5891 0.58912916 1294 P61088;Q5JXB2 UBE2N;UBE2NL Ubiquitin-conjugating enzyme E2 N;Putative ubiquitin-conjugating enzyme E2 N-like yes no 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 32.358 32.249 2 1.2561E-23 8376 20211116_3429_TMUAki_TMT10x_P_F2 251.87 198.55 2164400 3677700 0 3354700 5374200 3287400 2512500 1855800 2424700 1705400 3030500 2015000 3430500 186630 3444200 5078700 3321000 2695500 1954600 2492100 1671800 2904600 4 4 0 4 4 4 4 4 4 4 4 1486100 2443700 0 2211800 4546200 2649600 1626400 1214800 1610100 1110900 1983900 1383500 2279400 140750 2279300 4284100 2639900 1801900 1304400 1652000 1089300 1902200 2 2 0 2 2 2 2 2 2 2 2 678290 1234000 0 1142900 828000 637850 886110 640990 814620 594500 1046600 631450 1151100 45879 1164900 794580 681020 893570 650170 840090 582530 1002400 2 2 0 2 2 2 2 2 2 2 2 292810000 212160000 80645000 19210 1294 17643 98054;98055;98056;98057 118717;118718;118719;118720 118718 4 TNEGVIEFR Unmodified 1063.5298 0.52982336 1613 Q13247;Q13247-3 SRSF6 Serine/arginine-rich splicing factor 6 yes no 0 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 42.814 42.694 2 6.2317E-06 11194 20211116_3440_TMUAki_TMT10x_S_F2 168 135.16 10202000 16509000 77508 16816000 22800000 23947000 13837000 22695000 21724000 17293000 18553000 9499600 15406000 1037900 17240000 21637000 23927000 14749000 22977000 21643000 17112000 17995000 7 7 4 7 7 7 7 7 7 7 7 6363700 10308000 46871 10446000 18099000 19332000 9725800 13388000 13104000 10232000 11365000 5925200 9619000 681220 10779000 17143000 19013000 10408000 13817000 13122000 10123000 11017000 4 4 2 4 4 4 4 4 4 4 4 3838700 6200800 30637 6370400 4700300 4614300 4111500 9307600 8619500 7060800 7187900 3574400 5786700 356720 6460600 4493800 4914600 4340800 9159200 8520800 6988500 6978300 3 3 2 3 3 3 3 3 3 3 3 1153700000 661210000 492540000 19211 1613 17644 98058;98059;98060;98061;98062;98063 118721;118722;118723;118724;118725;118726;118727 118726 7 TNEKVELQELNDR Unmodified 1586.79 0.79001381 561 P08670;P17661 VIM;DES Vimentin;Desmin yes no 0 0 0 1 By MS/MS By MS/MS 3 0.894 2 1 2 2 3 40.335 40.283 3 1.2078E-06 13227 20211116_3441_TMUAki_TMT10x_S_F3 117.48 57.614 8464800 13508000 79864 14732000 25699000 19658000 12431000 13788000 18166000 10696000 15224000 7881900 12609000 984210 15016000 24311000 19590000 13481000 14223000 18126000 10574000 14777000 6 6 5 6 6 6 6 6 6 6 6 5877100 9277300 39449 9935400 23613000 17597000 10210000 9643900 12728000 7403600 10533000 5472200 8659100 739030 10204000 22304000 17275000 11135000 10140000 12760000 7323000 10229000 3 3 2 3 3 3 3 3 3 3 3 2587700 4230300 40416 4796300 2086200 2060500 2221700 4144600 5438700 3292700 4691000 2409700 3949400 245180 4812200 2006200 2314600 2346100 4083300 5365700 3250900 4548400 3 3 3 3 3 3 3 3 3 3 3 1000700000 790600000 210140000 19212 561 17645 98064;98065;98066;98067;98068 118728;118729;118730;118731;118732;118733 118731 6 TNEQMHQLVAAYK Oxidation (M) 1547.7402 0.74022685 548 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 1 0 By MS/MS 5 0 1 1 34.505 34.683 3 0.01653 7368 20211116_3444_TMUAki_TMT10x_S_F5 51.546 22.218 632320 1001300 6093.4 1217600 553150 593430 591450 782460 842510 686320 943020 588750 935100 50792 1217600 531310 647300 605700 783140 849690 674260 906580 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 632320 1001300 6093.4 1217600 553150 593430 591450 782460 842510 686320 943020 588750 935100 50792 1217600 531310 647300 605700 783140 849690 674260 906580 2 2 1 2 2 2 2 2 2 2 2 23841000 0 23841000 19213 548 17646 98069 118734;118735 118734 501 2 TNFFIQLVRPGVAQPEDTVQFR Unmodified 2561.3391 0.33905647 1850 Q16540 MRPL23 39S ribosomal protein L23, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 76.842 76.794 3 1.3851E-19 25386 20211116_3431_TMUAki_TMT10x_P_F4 150.09 135.16 11586000 19555000 58363 17354000 10778000 16013000 12389000 10743000 9653000 9821300 14052000 10788000 18239000 997910 17839000 10378000 16278000 12397000 11162000 10096000 9629900 13419000 4 4 3 4 4 4 4 4 4 4 4 8483700 14137000 58363 12395000 6298300 12743000 8448400 7976900 7327700 7580800 10059000 7899600 13185000 727140 12773000 6096700 12853000 8422500 8339000 7600600 7420100 9619100 3 3 3 3 3 3 3 3 3 3 3 3102000 5418200 0 4959400 4479900 3270500 3940100 2766500 2325300 2240500 3992600 2888200 5054000 270770 5066600 4281600 3424600 3974900 2822500 2495400 2209800 3799900 1 1 0 1 1 1 1 1 1 1 1 2140100000 1106700000 1033400000 19214 1850 17647 98070;98071;98072 118736;118737;118738;118739 118738 4 TNGKEPELLEPIPYEFMA Oxidation (M) 2093.0027 0.0027087015 1052 P46778 RPL21 60S ribosomal protein L21 yes yes 0 0 1 1 By MS/MS By MS/MS 3.91 1.08 1 3 4 2 1 5 6 77.121 77.082 2;3 1.3625E-07 28074 20211116_3441_TMUAki_TMT10x_S_F3 111.96 98.76 48532000 84841000 252740 66549000 52162000 85691000 60305000 62144000 64581000 62216000 67004000 45188000 79097000 2579600 69469000 50219000 85586000 60877000 64374000 65599000 60760000 64561000 12 12 5 12 12 12 12 12 12 12 12 30826000 51213000 130950 38523000 27577000 61420000 34969000 37768000 39987000 38945000 41323000 28702000 47739000 994000 40538000 26625000 60626000 35240000 39629000 40508000 37988000 39821000 6 6 2 6 6 6 6 6 6 6 6 17706000 33628000 121790 28026000 24586000 24271000 25336000 24376000 24594000 23271000 25681000 16486000 31358000 1585600 28931000 23594000 24960000 25637000 24745000 25091000 22773000 24740000 6 6 3 6 6 6 6 6 6 6 6 15905000000 8276400000 7628600000 19215 1052 17648 98073;98074;98075;98076;98077;98078;98079;98080;98081;98082;98083 118740;118741;118742;118743;118744;118745;118746;118747;118748;118749;118750;118751 118746 1361 12 TNGKEPELLEPIPYEFMA Unmodified 2077.0078 0.0077940794 1052 P46778 RPL21 60S ribosomal protein L21 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0 3 2 1 78.958 78.88 2;3 0.02677 27819 20211116_3430_TMUAki_TMT10x_P_F3 58.752 45.616 9095700 16525000 205610 16445000 12891000 11287000 13200000 8638100 9139900 10681000 12336000 8470600 15419000 998880 16705000 12381000 11757000 13247000 8977500 9589400 10347000 11801000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9095700 16525000 205610 16445000 12891000 11287000 13200000 8638100 9139900 10681000 12336000 8470600 15419000 998880 16705000 12381000 11757000 13247000 8977500 9589400 10347000 11801000 1 1 1 1 1 1 1 1 1 1 1 1578400000 789860000 788550000 19216 1052 17648 98084;98085;98086 118752;118753 118752 2 TNHFAIVNLR Unmodified 1183.6462 0.64619053 2972 Q9NVI1;Q9NVI1-2;Q9NVI1-1 FANCI Fanconi anemia group I protein yes no 0 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 3 1 40.972 40.906 3 8.8917E-06 10421 20211116_3440_TMUAki_TMT10x_S_F2 137.46 111.02 5304100 8084800 34342 8712900 10085000 8788400 5250300 5381900 4923000 5054400 6685100 4938900 7546300 538720 8845300 9550700 8871800 5568300 5634100 5085200 4949900 6394300 4 4 4 4 4 4 4 4 4 4 4 4712900 7196000 33405 7786200 9496100 8397400 4752100 4793600 4358300 4551700 5987800 4388500 6716900 488860 7910700 8988100 8436000 5056200 5048500 4508900 4455400 5725800 3 3 3 3 3 3 3 3 3 3 3 591180 888730 937.13 926640 589110 390970 498170 588270 564710 502730 697250 550460 829420 49857 934640 562630 435770 512130 585590 576290 494520 668510 1 1 1 1 1 1 1 1 1 1 1 444540000 370890000 73649000 19217 2972 17649 98087;98088;98089;98090 118754;118755;118756;118757;118758 118758 5 TNHIGHTGYLNTVTVSPDGSLCASGGK Unmodified 2742.3031 0.30314125 1405 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 6.38 1.98 2 2 5 4 6 7 44.904 45.112 3;4;5 4.4092E-42 13309 20211116_3435_TMUAki_TMT10x_P_F7 190.19 172.82 38997000 68119000 204400 82295000 43996000 57448000 38173000 39726000 37508000 40808000 44586000 36310000 63616000 2573000 82581000 42037000 59659000 39005000 41317000 38438000 39811000 42791000 20 20 8 20 20 20 20 20 20 20 20 20522000 33079000 141890 40631000 31520000 42700000 24288000 19130000 18606000 19680000 21210000 19108000 30894000 1859300 40948000 30041000 42842000 24838000 20656000 19269000 19198000 20380000 9 9 4 9 9 9 9 9 9 9 9 18476000 35041000 62509 41664000 12476000 14749000 13886000 20596000 18902000 21128000 23376000 17202000 32722000 713690 41634000 11996000 16817000 14166000 20661000 19169000 20613000 22412000 11 11 4 11 11 11 11 11 11 11 11 23777000000 15639000000 8138100000 19218 1405 17650 98091;98092;98093;98094;98095;98096;98097;98098;98099;98100;98101;98102;98103 118759;118760;118761;118762;118763;118764;118765;118766;118767;118768;118769;118770;118771;118772;118773;118774;118775;118776;118777;118778 118761 20 TNIIPVLEDAR Unmodified 1239.6823 0.68230126 19 A6NHQ2 FBLL1 rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.8 0.748 2 2 1 3 2 58.947 58.856 2 1.4736E-18 18486 20211116_3442_TMUAki_TMT10x_S_F4 222.18 0 32066000 54613000 79665 58702000 44293000 51577000 36602000 39652000 38938000 37366000 44476000 29854000 50975000 2556000 59490000 42259000 52714000 37601000 40849000 39707000 36587000 42733000 6 6 1 6 6 6 6 6 6 6 6 18004000 29599000 79665 33579000 31320000 38855000 25730000 20805000 20463000 19428000 23733000 16763000 27634000 1626600 34054000 29887000 38852000 26228000 22023000 21164000 19031000 22793000 3 3 1 3 3 3 3 3 3 3 3 14062000 25014000 0 25123000 12974000 12722000 10872000 18847000 18474000 17938000 20743000 13091000 23341000 929390 25436000 12373000 13862000 11373000 18826000 18542000 17556000 19940000 3 3 0 3 3 3 3 3 3 3 3 2792000000 1597100000 1194800000 19219 19 17651 98104;98105;98106;98107;98108 118779;118780;118781;118782;118783;118784 118784 6 TNIVTASVDAINFHDK Unmodified 1743.8792 0.87916317 64 O00154-4;O00154;O00154-6;O00154-7;O00154-5;O00154-2;O00154-3 ACOT7 Cytosolic acyl coenzyme A thioester hydrolase yes no 0 0 0 0 By MS/MS By MS/MS 5.36 1.82 1 2 2 3 2 1 6 5 62.176 62.351 3;4 7.3502E-38 18472 20211116_3434_TMUAki_TMT10x_P_F6 218.66 200.3 59402000 100630000 908340 98489000 71577000 87331000 68265000 69442000 65385000 67987000 78087000 55316000 93887000 5914100 100460000 68601000 89253000 69328000 71463000 67095000 66460000 74935000 11 11 9 11 11 11 11 11 11 11 11 27300000 43449000 145670 43986000 33813000 53670000 32969000 28809000 27772000 29858000 33762000 25420000 40545000 2486500 44980000 32409000 53519000 33325000 30577000 28693000 29118000 32384000 6 6 5 6 6 6 6 6 6 6 6 32103000 57177000 762670 54503000 37764000 33662000 35297000 40633000 37614000 38129000 44325000 29896000 53342000 3427600 55479000 36193000 35734000 36004000 40886000 38402000 37342000 42551000 5 5 4 5 5 5 5 5 5 5 5 16357000000 8177200000 8179300000 19220 64 17652 98109;98110;98111;98112;98113;98114;98115;98116;98117;98118;98119 118785;118786;118787;118788;118789;118790;118791;118792;118793;118794;118795;118796;118797 118789 13 TNLIFLSGNR Unmodified 1133.6193 0.61930707 2664 Q9BTE6-2;Q9BTE6;Q9BTE6-3 AARSD1 Alanyl-tRNA editing protein Aarsd1 yes no 0 0 0 0 By MS/MS 3 0 1 1 57.624 57.221 2 0.026175 20073 20211116_3441_TMUAki_TMT10x_S_F3 60.434 3.3305 6034700 10505000 111630 9806300 6271600 6280700 5659500 8051500 7828100 7398600 8222500 5619800 9800000 607680 10001000 6004800 6655700 5839800 8077300 7882800 7252700 7919800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6034700 10505000 111630 9806300 6271600 6280700 5659500 8051500 7828100 7398600 8222500 5619800 9800000 607680 10001000 6004800 6655700 5839800 8077300 7882800 7252700 7919800 2 2 2 2 2 2 2 2 2 2 2 114950000 0 114950000 19221 2664 17653 98120 118798;118799 118798 2 TNLIVNYLPQNMTQDELR Oxidation (M) 2177.0787 0.078667612 1825 Q15717;Q15717-2 ELAVL1 ELAV-like protein 1 yes no 0 0 1 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 67.833 68.024 3 7.3411E-06 21176 20211116_3445_TMUAki_TMT10x_S_F6 84.773 74.249 12820000 21826000 153950 21120000 15294000 20471000 14534000 14414000 13544000 14781000 17124000 11936000 20363000 998340 21586000 14639000 20758000 14751000 14972000 13949000 14421000 16408000 7 7 3 7 7 7 7 7 7 7 7 7087800 11496000 0 11255000 7416100 13860000 7921400 7334400 6869900 7652000 8591200 6597800 10726000 386660 11538000 7110300 13813000 7976000 7796000 7096000 7460300 8234300 3 3 0 3 3 3 3 3 3 3 3 5732400 10330000 153950 9865900 7877700 6610400 6612500 7080000 6674300 7129200 8532900 5338300 9636900 611680 10049000 7528600 6945600 6775400 7176200 6853200 6960700 8173900 4 4 3 4 4 4 4 4 4 4 4 5047800000 2162800000 2885000000 19222 1825 17654 98121;98122;98123;98124 118800;118801;118802;118803;118804;118805;118806 118803 2444 7 TNLIVNYLPQNMTQDELR Unmodified 2161.0838 0.08375299 1825 Q15717;Q15717-2 ELAVL1 ELAV-like protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.6 0.49 2 3 2 3 76.327 76.365 2;3 3.3027E-63 26743 20211116_3446_TMUAki_TMT10x_S_F7 268.21 252.25 15407000 25444000 186610 24831000 19877000 22482000 20302000 15202000 14148000 16248000 19064000 14346000 23739000 1484900 25339000 19079000 22884000 20380000 15855000 14837000 15826000 18238000 5 5 3 5 5 5 5 5 5 5 5 7964300 12429000 123200 12025000 8474400 14275000 10392000 8157100 6957900 8598400 9669800 7416300 11596000 769820 12330000 8180500 14266000 10334000 8615500 7325000 8379500 9244200 2 2 1 2 2 2 2 2 2 2 2 7442500 13014000 63415 12805000 11403000 8206500 9910200 7045300 7190500 7650000 9394000 6930100 12143000 715110 13010000 10899000 8617800 10046000 7239900 7512300 7446500 8993800 3 3 2 3 3 3 3 3 3 3 3 2932900000 1240800000 1692100000 19223 1825 17654 98125;98126;98127;98128;98129 118807;118808;118809;118810;118811 118811 5 TNLIVNYLPQNMTQEEFR Oxidation (M) 2225.0787 0.078667612 815 P26378;P26378-4;P26378-2;P26378-5;P26378-1;P26378-3 ELAVL4 ELAV-like protein 4 yes no 0 0 1 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 69.356 69.416 3 1.9316E-07 23851 20211116_3446_TMUAki_TMT10x_S_F7 101.8 92.271 11526000 20245000 354120 18794000 16867000 16374000 13954000 14548000 12979000 13103000 16192000 10734000 18885000 1341900 19240000 16119000 16789000 14277000 14840000 13361000 12857000 15520000 5 5 4 5 5 5 5 5 5 5 5 4260600 6388300 166290 6560300 4352400 8104400 5043400 6019200 5126800 4745400 5576400 3968300 5961600 509500 6703600 4200700 8114200 5082200 6187000 5228000 4687000 5365400 2 2 2 2 2 2 2 2 2 2 2 7264900 13857000 187840 12234000 12514000 8269500 8910900 8528400 7852300 8358000 10616000 6765600 12924000 832440 12536000 11919000 8674800 9194300 8652900 8132700 8169800 10155000 3 3 2 3 3 3 3 3 3 3 3 4345100000 1380700000 2964400000 19224 815 17655 98130;98131;98132 118812;118813;118814;118815;118816 118816 969 5 TNLPIFK Unmodified 831.48544 0.48543935 269;3186 O60493;O60493-3;Q9UMY4;Q9UMY4-1 SNX3;SNX12 Sorting nexin-3;Sorting nexin-12 no no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 56.914 56.742 2 0.0020561 17047 20211116_3440_TMUAki_TMT10x_S_F2 130.34 51.222 26851000 43160000 174270 47172000 39567000 29957000 26301000 33456000 31685000 29044000 38484000 25002000 40288000 2503600 47582000 37611000 31658000 27538000 33707000 32240000 28547000 36913000 5 5 3 5 5 5 5 5 5 5 5 5473700 8034400 73391 9487600 11757000 11849000 7181400 6789400 6774100 5841200 7627500 5097100 7502300 610210 9611600 11163000 11812000 7511100 7130000 6939600 5743900 7331500 1 1 1 1 1 1 1 1 1 1 1 21377000 35126000 100880 37684000 27810000 18107000 19119000 26666000 24911000 23202000 30856000 19905000 32786000 1893400 37971000 26449000 19846000 20027000 26577000 25300000 22803000 29582000 4 4 2 4 4 4 4 4 4 4 4 735610000 262450000 473160000 19225 269;3186 17656 98133;98134;98135 118817;118818;118819;118820;118821 118820 5 TNLYQDDAVTGEAAGLALGLVMLGSK Oxidation (M) 2622.3211 0.32108273 2575 Q99460;Q99460-2 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 1 0 By MS/MS 7.5 0.5 1 1 2 81.259 81.271 3 4.8695E-18 26856 20211116_3436_TMUAki_TMT10x_P_F8 137.32 129.13 2718400 4842000 27053 4088100 2690100 5891000 3111400 3730400 3755100 3970300 3917100 2531300 4515200 247990 4250800 2591500 5841600 3153900 3909100 3797700 3867700 3773700 3 3 2 3 3 3 3 3 3 3 3 2718400 4842000 27053 4088100 2690100 5891000 3111400 3730400 3755100 3970300 3917100 2531300 4515200 247990 4250800 2591500 5841600 3153900 3909100 3797700 3867700 3773700 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1162900000 1162900000 0 19226 2575 17657 98136;98137 118822;118823;118824 118824 2809 3 TNLYQDDAVTGEAAGLALGLVMLGSK Unmodified 2606.3262 0.32616811 2575 Q99460;Q99460-2 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 0 0 By MS/MS 7 0 1 1 82.634 82.643 3 1.7E-08 28939 20211116_3435_TMUAki_TMT10x_P_F7 89.773 81.02 523200 798570 2200.1 766720 500920 875000 618790 363170 413010 507460 623690 487160 745030 45115 786050 483400 873210 615140 399390 436650 489670 595130 1 1 1 1 1 1 1 1 1 1 1 523200 798570 2200.1 766720 500920 875000 618790 363170 413010 507460 623690 487160 745030 45115 786050 483400 873210 615140 399390 436650 489670 595130 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 55834000 55834000 0 19227 2575 17657 98138 118825 118825 1 TNNHIGGGAFSVDSPR Unmodified 1627.7703 0.77028142 3250 Q9Y2U8 LEMD3 Inner nuclear membrane protein Man1 yes yes 0 0 0 0 By MS/MS By matching 5 0 2 1 1 34.081 34.146 3 0.0045063 8492 20211116_3433_TMUAki_TMT10x_P_F5 58.123 45.547 335370 560110 11352 692170 968960 775690 487840 439380 484470 422400 554910 312350 523140 47258 698050 917680 777510 519890 463200 495510 413240 533120 1 1 1 1 1 1 1 1 1 1 1 335370 560110 11352 692170 968960 775690 487840 439380 484470 422400 554910 312350 523140 47258 698050 917680 777510 519890 463200 495510 413240 533120 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 79042000 67088000 11954000 19228 3250 17658 98139;98140 118826 118826 1 TNNIELHYCTGAYR Unmodified 1710.7784 0.77840327 2975 Q9NVM9;Q9NVM9-2 ASUN Protein asunder homolog yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 37.536 37.603 3 0.00037632 8827 20211116_3444_TMUAki_TMT10x_S_F5 79.471 72.094 1447300 2341100 15607 2633100 1782000 1603000 1496300 2108600 1925300 1595300 2177100 1347700 2185600 139230 2650200 1702400 1707900 1545900 2103000 1948800 1579200 2092300 4 4 4 4 4 4 4 4 4 4 4 438210 730890 13726 810950 804540 826410 568940 411820 350160 338120 587980 408120 682300 54254 821880 766340 831620 582650 437420 374240 333270 559840 2 2 2 2 2 2 2 2 2 2 2 1009100 1610200 1880.8 1822200 977470 776550 927320 1696700 1575100 1257200 1589100 939610 1503300 84973 1828300 936100 876270 963290 1665500 1574500 1246000 1532500 2 2 2 2 2 2 2 2 2 2 2 72850000 34422000 38427000 19229 2975 17659 98141;98142 118827;118828;118829;118830 118829 4 TNNPLPLEQR Unmodified 1180.62 0.62003536 3132 Q9UIA9 XPO7 Exportin-7 yes yes 0 0 0 0 By MS/MS 4 0 1 1 36.903 37.035 2 0.0017613 9578 20211116_3442_TMUAki_TMT10x_S_F4 84.817 55.043 203380 336560 0 381070 210200 161910 203540 224760 290940 179280 329400 189350 314210 15384 382330 201280 179870 209520 223990 293520 176970 316570 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 203380 336560 0 381070 210200 161910 203540 224760 290940 179280 329400 189350 314210 15384 382330 201280 179870 209520 223990 293520 176970 316570 1 1 0 1 1 1 1 1 1 1 1 12128000 0 12128000 19230 3132 17660 98143 118831 118831 1 TNPTEPVGVVCR Unmodified 1327.6554 0.65543458 1841 Q16222;Q16222-2;Q16222-3 UAP1 UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase yes no 0 0 0 0 By MS/MS 4 0 1 1 35.935 35.962 2 2.3436E-28 8765 20211116_3431_TMUAki_TMT10x_P_F4 236.42 205.8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19231 1841 17661 98144 118832 118832 1 TNREGLEYIPLR Unmodified 1459.7783 0.77832691 1797 Q15392;Q15392-2 DHCR24 Delta(24)-sterol reductase yes no 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 43.412 43.53 3 8.2056E-06 10855 20211116_3444_TMUAki_TMT10x_S_F5 103.67 73.234 2680000 4489300 27827 5483600 4886700 4680400 3179800 3439600 3825100 3476300 3853200 2495500 4192700 274000 5512000 4644100 4789700 3334600 3560900 3864200 3393600 3716200 2 2 1 2 2 2 2 2 2 2 2 1503000 2622300 27827 3103600 3954700 3765900 2274900 1937400 2181400 2107200 2088900 1399700 2448700 184880 3142100 3751400 3754500 2392500 2067200 2220000 2051000 2018000 1 1 1 1 1 1 1 1 1 1 1 1176900 1866900 0 2380100 931990 914480 904920 1502200 1643700 1369100 1764300 1095800 1744000 89120 2369900 892630 1035200 942190 1493700 1644100 1342600 1698200 1 1 0 1 1 1 1 1 1 1 1 444240000 191550000 252690000 19232 1797 17663 98145;98146 118833;118834 118834 2 TNRPPLSLSR Unmodified 1139.6411 0.64110515 1534 Q07020;Q07020-2 RPL18 60S ribosomal protein L18 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 1.5 2 2 1 1 5 1 31.497 31.501 3 1.4113E-09 8059 20211116_3429_TMUAki_TMT10x_P_F2 157.77 101.75 1203000 1927400 20927 1966300 2568300 2188100 1416700 1479600 1471700 1173100 1806300 1120300 1798600 137250 2006500 2434800 2199500 1499000 1531000 1506600 1158400 1732100 3 3 2 3 3 3 3 3 3 3 3 820600 1304300 20927 1306600 2239600 1890300 1099900 994900 996040 839760 1212300 764210 1217100 107410 1341500 2120100 1869600 1172100 1052100 1025500 826540 1162700 2 2 2 2 2 2 2 2 2 2 2 382400 623080 0 659710 328640 297860 316810 484740 475610 333370 594070 356050 581540 29841 665020 314750 329960 326890 478890 481110 331820 569410 1 1 0 1 1 1 1 1 1 1 1 130040000 105950000 24099000 19233 1534 17664 98147;98148;98149;98150;98151;98152 118835;118836;118837;118838;118839 118836 5 TNSTFNQVVLK Unmodified 1249.6667 0.6666512 1534 Q07020;Q07020-2 RPL18 60S ribosomal protein L18 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 3 2 1 51.093 51.18 2;3 2.775E-36 14091 20211116_3447_TMUAki_TMT10x_S_F8 260.98 194.91 4433800 6613500 52477 8755400 13354000 9952900 5598700 5541500 6132000 4511200 6202400 4128600 6179100 523370 8798600 12611000 9966400 6101000 5826000 6217400 4448300 5981100 2 2 1 2 2 2 2 2 2 2 2 4433800 6613500 52477 8755400 13354000 9952900 5598700 5541500 6132000 4511200 6202400 4128600 6179100 523370 8798600 12611000 9966400 6101000 5826000 6217400 4448300 5981100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 560860000 560860000 0 19234 1534 17665 98153;98154;98155 118840;118841;118842 118842 3 TNSTFNQVVLKR Unmodified 1405.7678 0.76776222 1534 Q07020;Q07020-2 RPL18 60S ribosomal protein L18 yes no 0 0 0 1 By MS/MS By MS/MS 2.75 1.2 2 1 2 3 3 5 41.787 41.77 3 3.8191E-31 13787 20211116_3441_TMUAki_TMT10x_S_F3 272.92 215.08 21132000 32576000 356450 41555000 51287000 37528000 24701000 31694000 27906000 21280000 31326000 19678000 30431000 2453500 41698000 48526000 38349000 26545000 32207000 28371000 21212000 30113000 8 8 6 8 8 8 8 8 8 8 8 12634000 19262000 173650 24086000 45444000 31686000 17697000 17523000 19603000 13130000 19656000 11765000 17992000 1615800 24345000 42883000 31492000 19460000 18399000 19861000 13004000 18959000 5 5 3 5 5 5 5 5 5 5 5 8497500 13314000 182810 17469000 5843100 5842600 7004600 14172000 8303700 8150300 11670000 7913400 12439000 837700 17354000 5642900 6856400 7084500 13808000 8510200 8208100 11153000 3 3 3 3 3 3 3 3 3 3 3 2056100000 785190000 1271000000 19235 1534 17666 98156;98157;98158;98159;98160;98161;98162;98163 118843;118844;118845;118846;118847;118848;118849;118850;118851 118849 9 TNVANFPGHSGPITSIAFSENGYYLATAADDSSVK Unmodified 3600.7009 0.70087104 3182 Q9UMS4 PRPF19 Pre-mRNA-processing factor 19 yes yes 0 0 0 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 2 2 75.755 75.749 4 2.7642E-23 26443 20211116_3446_TMUAki_TMT10x_S_F7 122.45 111.75 4830800 8911700 242320 6988700 6114100 8211600 6758900 6585900 6586300 7102000 7429000 4499400 8308300 601320 7283700 5890600 8253400 6816700 6793600 6737900 6915000 7140400 3 3 1 3 3 3 3 3 3 3 3 1398800 2375500 0 1943200 1301800 2733400 1526900 1679600 1714900 1865400 1848500 1302300 2214900 96985 2024700 1252700 2712200 1542800 1766400 1741100 1814200 1779000 1 1 0 1 1 1 1 1 1 1 1 3432000 6536200 242320 5045500 4812300 5478100 5232000 4906400 4871400 5236600 5580500 3197100 6093400 504330 5259000 4637900 5541200 5273900 5027200 4996800 5100800 5361300 2 2 1 2 2 2 2 2 2 2 2 3312000000 1222700000 2089300000 19236 3182 17667 98164;98165;98166;98167 118852;118853;118854 118853 3 TNVLYELAQYASEPSEQELLRK Unmodified 2580.3071 0.30714722 696 P16435 POR NADPH--cytochrome P450 reductase yes yes 0 0 0 1 By MS/MS 7 0 1 1 78.634 78.683 3 8.3662E-05 27732 20211116_3446_TMUAki_TMT10x_S_F7 67.364 47.467 2839600 4487500 25638 4621500 3222400 3294900 3630100 2419600 2211500 2267400 3163200 2644200 4187800 264680 4685300 3101500 3418700 3617000 2499700 2345700 2220700 3022000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2839600 4487500 25638 4621500 3222400 3294900 3630100 2419600 2211500 2267400 3163200 2644200 4187800 264680 4685300 3101500 3418700 3617000 2499700 2345700 2220700 3022000 1 1 1 1 1 1 1 1 1 1 1 653750000 0 653750000 19237 696 17668 98168 118855 118855 1 TNVNGGAIALGHPLGGSGSR Unmodified 1833.9446 0.94455739 1019 P42765 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 1 1 1 1 38.414 38.494 3 1.201E-09 11570 20211116_3439_TMUAki_TMT10x_S_F1 118.08 92.361 391060 545690 164.59 749280 425810 383740 315320 404510 526550 447900 536980 364100 509950 31391 744550 405410 413940 332160 411530 526800 435660 517680 2 2 1 2 2 2 2 2 2 2 2 78268 98606 164.59 122180 203030 164980 103900 93309 99358 78300 104610 72876 92098 8389.7 123620 192190 163820 110440 98038 101470 77091 100750 1 1 1 1 1 1 1 1 1 1 1 312790 447090 0 627100 222780 218760 211420 311200 427190 369600 432370 291220 417850 23001 620930 213220 250120 221730 313490 425340 358570 416930 1 1 0 1 1 1 1 1 1 1 1 70645000 17992000 52653000 19238 1019 17669 98169;98170 118856;118857 118857 2 TNVVTMPTAHPR Oxidation (M) 1338.6714 0.671419 1632 Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;Q13428-6;Q13428-7 TCOF1 Treacle protein yes no 0 0 1 0 By MS/MS 5 0 1 1 27.94 27.867 3 0.024387 5836 20211116_3433_TMUAki_TMT10x_P_F5 48.532 29.401 130980 241720 4887.5 184670 222780 266760 160320 149870 144150 139890 182760 121990 225330 16700 193650 212340 264070 165380 157980 148720 137040 175110 2 2 2 2 2 2 2 2 2 2 2 130980 241720 4887.5 184670 222780 266760 160320 149870 144150 139890 182760 121990 225330 16700 193650 212340 264070 165380 157980 148720 137040 175110 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11343000 11343000 0 19239 1632 17670 98171 118858;118859 118858 2182 2 TNYNDRYDEIR Unmodified 1457.6535 0.65352033 1358 P62424 RPL7A 60S ribosomal protein L7a yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 1.12 1 1 1 1 3 1 31.811 31.665 3 5.7592E-09 8160 20211116_3429_TMUAki_TMT10x_P_F2 157.56 125.06 1416300 2188100 37075 3211600 4341100 2508900 1814700 1856300 2625700 1356300 2601200 1319000 2045600 192940 3193600 4101200 2584500 1997900 1905400 2634800 1345200 2510100 3 3 3 3 3 3 3 3 3 3 3 767650 1237000 24239 1760000 3847200 1956200 1187700 1065800 1398400 809950 1401900 714940 1156200 129360 1761500 3623500 1960800 1350300 1120900 1413600 801580 1352200 2 2 2 2 2 2 2 2 2 2 2 648660 951110 12837 1451700 493860 552620 627000 790590 1227300 546350 1199400 604060 889360 63573 1432100 477660 623780 647620 784500 1221300 543660 1157900 1 1 1 1 1 1 1 1 1 1 1 569440000 487320000 82112000 19240 1358 17671 98172;98173;98174;98175 118860;118861;118862;118863 118861 4 TNYNDRYDEIRR Unmodified 1613.7546 0.75463136 1358 P62424 RPL7A 60S ribosomal protein L7a yes yes 0 0 0 2 By MS/MS By MS/MS 3.22 1.31 1 2 2 2 2 7 2 29.129 29.01 3;4 5.9299E-15 5933 20211116_3431_TMUAki_TMT10x_P_F4 180.48 144.83 1655800 2601900 31844 2963500 5696800 3668600 2230600 2297300 2871900 1830100 2709200 1541900 2429200 212330 3008300 5376400 3663000 2463700 2390900 2887800 1806600 2618500 9 9 5 9 9 9 9 9 9 9 9 1440300 2251700 28468 2508800 5505000 3465700 1976900 2027800 2479300 1634400 2339400 1341200 2102000 191650 2555500 5190800 3439300 2205200 2122500 2495300 1612500 2261000 7 7 3 7 7 7 7 7 7 7 7 215530 350170 3376.2 454740 191770 202930 253760 269500 392660 195710 369800 200700 327130 20683 452760 185640 223760 258460 268440 392580 194180 357440 2 2 2 2 2 2 2 2 2 2 2 461100000 356870000 104230000 19241 1358 17672 98176;98177;98178;98179;98180;98181;98182;98183;98184 118864;118865;118866;118867;118868;118869;118870;118871;118872 118867 9 TPAAAAAMNLASPR Oxidation (M) 1356.682 0.68198369 3216 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 0 0 1 0 By MS/MS By MS/MS 7.54 0.499 6 7 10 3 33.217 33.612 2;3 0.00025303 6838 20211116_3447_TMUAki_TMT10x_S_F8 74.475 59.273 549900 891810 10520 948450 872400 909920 640450 534330 595560 526320 698650 512040 832370 54386 962990 830940 920910 660380 561980 611510 514360 670770 9 9 5 9 9 9 9 9 9 9 9 407750 660770 9446 678070 739770 781360 500250 417170 466840 408290 499440 379680 616630 41734 692060 703520 781440 518910 442260 477550 399130 480780 8 8 4 8 8 8 8 8 8 8 8 142140 231050 1073.5 270380 132630 128570 140210 117160 128730 118020 199210 132360 215740 12652 270930 127430 139460 141470 119720 133960 115230 189990 1 1 1 1 1 1 1 1 1 1 1 47147000 21632000 25515000 19242 3216 17673 98185;98186;98187;98188;98189;98190;98191;98192;98193;98194;98195;98196;98197 118873;118874;118875;118876;118877;118878;118879;118880;118881;118882;118883;118884;118885;118886;118887;118888 118888 3196 16 TPAALAALSLTGSGTPPTAANYPSSSR Unmodified 2558.2976 0.29764517 3216 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 1 3 70.098 69.915 3 3.4407E-33 25270 20211116_3441_TMUAki_TMT10x_S_F3 168.65 154.92 9359800 14868000 237200 13390000 10922000 11703000 11485000 11332000 10259000 10286000 12323000 8716700 13868000 1018900 13740000 10501000 12018000 11582000 11509000 10563000 10089000 11824000 6 6 6 6 6 6 6 6 6 6 6 3875600 5579600 19528 4986300 3658500 5911400 4579600 4329700 3735700 4057900 5252600 3608700 5204100 336480 5142600 3532300 5929500 4571000 4473800 3891200 3974400 5020000 2 2 2 2 2 2 2 2 2 2 2 5484200 9288300 217670 8404100 7263700 5791900 6905300 7002400 6523000 6228200 7070300 5107900 8663700 682460 8596900 6968900 6088700 7011300 7035300 6672200 6114700 6803500 4 4 4 4 4 4 4 4 4 4 4 2221800000 1113900000 1107900000 19243 3216 17674 98198;98199;98200;98201 118889;118890;118891;118892;118893;118894;118895 118892 7 TPADCPVIAIDSFR Unmodified 1560.7606 0.76062794 2647 Q9BS26 ERP44 Endoplasmic reticulum resident protein 44 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 2 2 63.901 63.971 2 1.4671E-18 20114 20211116_3431_TMUAki_TMT10x_P_F4 162.49 114.66 9034100 15154000 26675 14538000 10913000 15524000 10637000 11723000 11268000 11006000 12574000 8410900 14138000 690690 14889000 10451000 15669000 10823000 12090000 11482000 10779000 12089000 3 3 1 3 3 3 3 3 3 3 3 6002400 9418800 26675 8967300 6770000 12205000 7082800 7807000 7218300 6953600 7961600 5588500 8787100 470190 9228500 6496800 12135000 7172300 8134000 7363900 6826400 7657200 2 2 1 2 2 2 2 2 2 2 2 3031700 5734800 0 5570300 4142600 3318600 3553700 3916500 4050200 4052800 4612400 2822500 5350600 220500 5660600 3954300 3533100 3650900 3955900 4118600 3952500 4432100 1 1 0 1 1 1 1 1 1 1 1 2264700000 1421700000 842990000 19244 2647 17675 98202;98203;98204;98205 118896;118897;118898 118896 3 TPAEIREEFER Unmodified 1375.6732 0.67319314 2970 Q9NVH1;Q9NVH1-3;Q9NVH1-2 DNAJC11 DnaJ homolog subfamily C member 11 yes no 0 0 0 1 By MS/MS 3 0 1 1 41.701 41.755 3 0.00031551 12588 20211116_3430_TMUAki_TMT10x_P_F3 86.803 56.867 791840 1242700 3585.8 1400200 1831900 1816600 1000200 947510 1077500 860390 1045400 737210 1160200 71241 1423600 1735000 1805500 1060400 1004600 1091700 843900 1009400 2 2 1 2 2 2 2 2 2 2 2 791840 1242700 3585.8 1400200 1831900 1816600 1000200 947510 1077500 860390 1045400 737210 1160200 71241 1423600 1735000 1805500 1060400 1004600 1091700 843900 1009400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36615000 36615000 0 19245 2970 17676 98206 118899;118900 118900 2 TPAEVVSTCDITFACVSDPK Unmodified 2196.0079 0.0078704339 1891 Q49A26;Q49A26-5;Q49A26-4;Q49A26-2;Q49A26-3 GLYR1 Putative oxidoreductase GLYR1 yes no 0 0 0 0 By MS/MS 6 0 1 1 69.279 69.194 3 0.004035 21726 20211116_3445_TMUAki_TMT10x_S_F6 56.327 49.051 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19246 1891 17677 98207 118901 118901 1 TPAILYTYSGLR Unmodified 1353.7293 0.72925145 2202 Q8N684;Q8N684-2;Q8N684-3 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 3 2 1 64.184 63.733 2 1.2517E-11 21737 20211116_3430_TMUAki_TMT10x_P_F3 131.09 103.35 2630900 4747000 100840 4397700 3208600 2674700 2883600 3442100 3113400 3349000 3452900 2450400 4428200 320190 4485300 3074500 2848300 2949100 3458200 3169400 3274600 3320400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2630900 4747000 100840 4397700 3208600 2674700 2883600 3442100 3113400 3349000 3452900 2450400 4428200 320190 4485300 3074500 2848300 2949100 3458200 3169400 3274600 3320400 1 1 1 1 1 1 1 1 1 1 1 441210000 0 441210000 19247 2202 17678 98208;98209;98210 118902;118903;118904 118903 3 TPAIPTAVNLADSR Unmodified 1424.7623 0.7623425 3216 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.88 0.331 1 7 4 4 53.539 53.689 2;3 7.1841E-10 15408 20211116_3445_TMUAki_TMT10x_S_F6 122.39 92.649 3375200 5594900 31015 6140900 6526700 8078300 4921300 4069000 4074600 3884800 4805100 3142900 5222700 352870 6255100 6219600 8020000 5049700 4333900 4208200 3801700 4612700 2 2 2 2 2 2 2 2 2 2 2 3375200 5594900 31015 6140900 6526700 8078300 4921300 4069000 4074600 3884800 4805100 3142900 5222700 352870 6255100 6219600 8020000 5049700 4333900 4208200 3801700 4612700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 796840000 796840000 0 19248 3216 17679 98211;98212;98213;98214;98215;98216;98217;98218 118905;118906;118907;118908;118909;118910;118911;118912 118912 8 TPALVFEHVNNTDFK Unmodified 1730.8628 0.86278482 1419 P68400;Q8NEV1 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 58.217 58.498 3 5.8155E-07 19296 20211116_3446_TMUAki_TMT10x_S_F7 114.31 93.522 19526000 34740000 607850 37114000 21880000 18510000 17413000 30309000 29438000 25830000 29084000 18186000 32425000 2216000 37416000 20904000 20270000 18269000 30086000 29410000 25411000 28067000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19526000 34740000 607850 37114000 21880000 18510000 17413000 30309000 29438000 25830000 29084000 18186000 32425000 2216000 37416000 20904000 20270000 18269000 30086000 29410000 25411000 28067000 3 3 2 3 3 3 3 3 3 3 3 1334900000 0 1334900000 19249 1419 17680 98219;98220;98221 118913;118914;118915;118916 118916 4 TPALVNAAVTYSKPR Unmodified 1586.878 0.87804096 374 O75964 ATP5L ATP synthase subunit g, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 51.858 51.881 3 1.1444E-23 15193 20211116_3431_TMUAki_TMT10x_P_F4 180.7 155.74 40401000 70580000 498080 71725000 65371000 72093000 44293000 62696000 55501000 51953000 57396000 37621000 65863000 4125300 73096000 62179000 73210000 46377000 63897000 56039000 51183000 55309000 12 12 9 12 12 12 12 12 12 12 12 21907000 36527000 226980 37896000 44800000 55709000 30385000 32756000 30104000 26562000 29458000 20399000 34089000 2334700 38830000 42607000 55138000 31565000 34277000 30615000 26197000 28437000 6 6 4 6 6 6 6 6 6 6 6 18495000 34052000 271100 33829000 20571000 16384000 13908000 29940000 25397000 25391000 27939000 17222000 31774000 1790600 34266000 19572000 18072000 14812000 29621000 25425000 24985000 26873000 6 6 5 6 6 6 6 6 6 6 6 4034300000 2231800000 1802400000 19250 374 17681 98222;98223;98224;98225;98226;98227 118917;118918;118919;118920;118921;118922;118923;118924;118925;118926;118927;118928 118919 12 TPAPATTTSHNPLANILSK Unmodified 1933.0269 0.026890038 1948 Q5VT52;Q5VT52-2;Q5VT52-3;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 56.973 56.738 3 4.0696E-05 17150 20211116_3440_TMUAki_TMT10x_S_F2 79.489 61.124 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19251 1948 17682 98228;98229 118929;118930 118930 2 TPAQLAGHMQTHLGGAAPPVPGDAPQPQPTC Oxidation (M) 3117.476 0.47603702 1257 P56270-2 yes yes 0 0 1 0 By MS/MS 6 0 1 1 45.265 45.339 4 1.8432E-06 11533 20211116_3434_TMUAki_TMT10x_P_F6 69.674 64.13 288300 533030 5869.7 524450 714730 991820 498200 571530 510960 525160 499720 268480 497350 35345 542620 680220 972120 517070 600910 518850 514810 482410 1 1 1 1 1 1 1 1 1 1 1 288300 533030 5869.7 524450 714730 991820 498200 571530 510960 525160 499720 268480 497350 35345 542620 680220 972120 517070 600910 518850 514810 482410 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 351230000 351230000 0 19252 1257 17683 98230 118931 118931 1703 1 TPAQLAGHMQTHLGGAAPPVPGDAPQPQPTC Unmodified 3101.4811 0.48112239 1257 P56270-2 yes yes 0 0 0 0 By MS/MS 8 0 1 1 52.927 53.03 4 1.6865E-08 15341 20211116_3436_TMUAki_TMT10x_P_F8 82.62 78.003 624440 1219100 0 1140600 789190 1570200 803990 994490 1024900 988310 947860 581350 1137200 45626 1175500 756530 1560100 821580 1040000 1030200 965490 916750 1 1 0 1 1 1 1 1 1 1 1 624440 1219100 0 1140600 789190 1570200 803990 994490 1024900 988310 947860 581350 1137200 45626 1175500 756530 1560100 821580 1040000 1030200 965490 916750 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 434010000 434010000 0 19253 1257 17683 98231 118932 118932 1 TPASPVVHIR Unmodified 1075.6138 0.61382777 677 P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes yes 0 0 0 0 By matching By MS/MS 2.5 0.5 1 1 1 1 32.28 32.046 3 0.00059909 9855 20211116_3441_TMUAki_TMT10x_S_F3 87.123 63.695 284670 475600 4971.8 457800 308530 256020 323430 248020 244530 239580 341880 265100 443720 28569 465280 296510 273090 324850 252330 255670 234340 326780 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 284670 475600 4971.8 457800 308530 256020 323430 248020 244530 239580 341880 265100 443720 28569 465280 296510 273090 324850 252330 255670 234340 326780 1 1 1 1 1 1 1 1 1 1 1 38306000 14298000 24007000 19254 677 17684 98232;98233 118933 118933 1 TPATAPVPAR Unmodified 979.54508 0.5450795 726 P18887 XRCC1 DNA repair protein XRCC1 yes yes 0 0 0 0 By MS/MS 5 0 1 1 30.774 30.71 2 0.0029216 7005 20211116_3433_TMUAki_TMT10x_P_F5 80.787 52.613 404130 768540 14390 623540 686380 1056100 593190 547260 596030 544640 650330 376400 716590 50869 652820 656660 1037800 606660 582020 608160 532030 625670 1 1 1 1 1 1 1 1 1 1 1 404130 768540 14390 623540 686380 1056100 593190 547260 596030 544640 650330 376400 716590 50869 652820 656660 1037800 606660 582020 608160 532030 625670 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22238000 22238000 0 19255 726 17685 98234 118934 118934 1 TPAVEGLTEAEEEELRAELTK Unmodified 2314.154 0.15400062 214 O43399;O43399-2;O43399-4;O43399-3;O43399-5;O43399-7;O43399-6 TPD52L2 Tumor protein D54 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 73.48 73.426 3 2.4427E-76 25558 20211116_3439_TMUAki_TMT10x_S_F1 272.71 252.62 18579000 29911000 79322 33074000 16721000 22719000 21009000 11903000 13182000 15066000 20730000 17299000 27922000 1517300 33362000 16141000 23540000 20844000 12743000 14021000 14584000 19764000 4 4 3 4 4 4 4 4 4 4 4 11128000 17334000 50739 18799000 9408900 15370000 11704000 6625100 7637200 8350000 11680000 10361000 16180000 874870 19023000 9077800 15673000 11626000 7228900 8090900 8084000 11142000 2 2 1 2 2 2 2 2 2 2 2 7451100 12577000 28583 14275000 7312200 7349300 9305400 5278000 5544800 6716100 9049900 6938000 11742000 642440 14339000 7063100 7867600 9218200 5513900 5929900 6500000 8621600 2 2 2 2 2 2 2 2 2 2 2 1696900000 1104200000 592750000 19256 214 17686 98235;98236 118935;118936;118937;118938 118937 4 TPCEEILVK Unmodified 1087.5583 0.5583463 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 49.786 49.75 2 8.295E-05 15548 20211116_3429_TMUAki_TMT10x_P_F2 104.17 71.946 12446000 19610000 18549 21944000 19890000 18009000 13512000 14431000 15354000 12616000 16416000 11589000 18307000 1126900 22163000 18911000 18509000 14096000 14798000 15577000 12396000 15803000 4 4 2 4 4 4 4 4 4 4 4 6081500 8899400 17450 9786400 12876000 12323000 7060300 6716600 7268400 5985600 7523000 5662600 8307400 609380 9959000 12200000 12271000 7472100 7090000 7394300 5876000 7249300 2 2 1 2 2 2 2 2 2 2 2 6364700 10711000 1099.6 12157000 7014200 5686400 6451200 7713900 8085200 6630000 8892600 5926000 9999900 517540 12204000 6710200 6237600 6623800 7708200 8182500 6519900 8553400 2 2 1 2 2 2 2 2 2 2 2 1391400000 888040000 503360000 19257 755 17687 98237;98238;98239;98240;98241 118939;118940;118941;118942;118943 118939 5 TPCNAGTFSQPEK Unmodified 1435.6402 0.64017845 234 O43684;O43684-2 BUB3 Mitotic checkpoint protein BUB3 yes no 0 0 0 0 By MS/MS 5 0.816 1 1 1 3 35.795 35.776 3 0.011115 9518 20211116_3431_TMUAki_TMT10x_P_F4 60.55 46.292 251480 392190 14415 490690 410160 468260 354670 203730 257580 209970 303690 234260 366320 36506 493290 392760 472470 359650 220680 267930 204810 291530 1 1 1 1 1 1 1 1 1 1 1 251480 392190 14415 490690 410160 468260 354670 203730 257580 209970 303690 234260 366320 36506 493290 392760 472470 359650 220680 267930 204810 291530 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10310000 10310000 0 19258 234 17688 98242;98243;98244 118944;118945;118946 118944 3 TPDTSTYCYETAEK Unmodified 1664.6876 0.68758215 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 41.809 41.944 3 1.7765E-06 12556 20211116_3430_TMUAki_TMT10x_P_F3 110.92 98.09 1305500 2208600 36.858 2786100 2869000 1885900 1291400 1634500 2183700 1518100 2124600 1215500 2063000 124850 2788000 2710900 1971100 1420100 1671000 2180400 1487500 2051300 3 3 1 3 3 3 3 3 3 3 3 580500 816030 36.858 1046100 2143900 1270900 644020 580400 839740 557090 772400 540500 762300 69140 1054300 2018000 1265400 737740 624260 843340 545040 747190 2 2 1 2 2 2 2 2 2 2 2 724960 1392500 0 1740000 725070 614940 647420 1054100 1343900 961010 1352100 674970 1300700 55710 1733700 692990 705720 682330 1046800 1337000 942410 1304100 1 1 0 1 1 1 1 1 1 1 1 96042000 38716000 57325000 19259 1057 17689 98245;98246 118947;118948;118949 118948 3 TPDVLKK Unmodified 799.48035 0.48035398 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 1 By MS/MS 6.86 0.639 2 4 1 7 35.086 35.52 3 0.050012 9467 20211116_3435_TMUAki_TMT10x_P_F7 57.047 18.256 285760 449170 10682 445920 467060 583060 445990 262320 281200 302790 387660 266150 419110 36186 457200 447960 578320 448380 284110 297060 294050 370660 1 1 1 1 1 1 1 1 1 1 1 285760 449170 10682 445920 467060 583060 445990 262320 281200 302790 387660 266150 419110 36186 457200 447960 578320 448380 284110 297060 294050 370660 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10331000 10331000 0 19260 897 17690 98247;98248;98249;98250;98251;98252;98253 118950;118951;118952;118953;118954;118955;118956 118952 7 TPEDGDYSYEIIEK Unmodified 1657.7359 0.73591255 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.816 3 3 3 6 3 59.526 59.305 2;3 5.3261E-33 20938 20211116_3441_TMUAki_TMT10x_S_F3 228.12 163.82 34160000 52273000 182080 60011000 46335000 53880000 37590000 35610000 34645000 33830000 41777000 31807000 48805000 3043800 60583000 44211000 54857000 38495000 37075000 35627000 33113000 40080000 9 9 5 9 9 9 9 9 9 9 9 23177000 33713000 38344 39822000 35877000 45026000 29310000 23597000 22733000 22878000 27659000 21580000 31480000 2006700 40271000 34229000 45067000 29870000 25052000 23589000 22374000 26530000 6 6 2 6 6 6 6 6 6 6 6 10982000 18560000 143740 20189000 10458000 8854400 8280200 12013000 11913000 10952000 14117000 10227000 17325000 1037100 20311000 9981700 9790400 8625300 12023000 12038000 10740000 13550000 3 3 3 3 3 3 3 3 3 3 3 3227300000 2534200000 693150000 19261 1057 17691 98254;98255;98256;98257;98258;98259;98260;98261;98262 118957;118958;118959;118960;118961;118962;118963;118964;118965 118965 9 TPEEGGYSYDISEK Unmodified 1573.6784 0.67839767 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 3 1 2 48.103 47.862 3 1.334E-06 16228 20211116_3441_TMUAki_TMT10x_S_F3 92.939 65.91 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19262 1057 17692 98263;98264;98265 118966;118967;118968 118967 3 TPEEIRK Unmodified 871.47633 0.47633123 1402 P63208;P63208-2 SKP1 S-phase kinase-associated protein 1 yes no 0 0 0 1 By MS/MS 4 0 1 1 30.492 30.526 3 0.083691 6566 20211116_3431_TMUAki_TMT10x_P_F4 43.124 2.1364 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19263 1402 17693 98266 118969 118969 1 TPEFLRK Unmodified 889.50215 0.50215205 821 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 1 By MS/MS 1 0 1 1 39.675 39.536 3 0.057128 11780 20211116_3439_TMUAki_TMT10x_S_F1 54.205 23.536 2338800 3640500 5848.8 4207200 1851900 1571000 2163700 1952700 2216400 2001900 2816400 2177700 3399100 186430 4212500 1783500 1771600 2180100 1967500 2273800 1953100 2698300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2338800 3640500 5848.8 4207200 1851900 1571000 2163700 1952700 2216400 2001900 2816400 2177700 3399100 186430 4212500 1783500 1771600 2180100 1967500 2273800 1953100 2698300 2 2 1 2 2 2 2 2 2 2 2 53284000 0 53284000 19264 821 17694 98267 118970;118971 118970 2 TPEILTVNSIGQLK Unmodified 1511.8559 0.85590853 2251 Q8NFH3 NUP43 Nucleoporin Nup43 yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 2 4 4 2 69.893 70.133 2;3 3.8433E-53 22313 20211116_3436_TMUAki_TMT10x_P_F8 279.53 249.27 23756000 38833000 175530 37808000 25773000 29048000 23204000 25393000 24209000 24389000 29260000 22120000 36231000 2078700 38512000 24653000 30050000 23702000 25972000 24764000 23861000 28070000 5 5 2 5 5 5 5 5 5 5 5 9146400 12782000 3810.9 12530000 8822100 14092000 9236500 8012400 7814500 7736800 10478000 8516100 11926000 744180 12824000 8468900 14123000 9303300 8445000 8106600 7567500 10025000 2 2 1 2 2 2 2 2 2 2 2 14610000 26051000 171720 25278000 16951000 14956000 13967000 17380000 16394000 16653000 18782000 13604000 24305000 1334500 25688000 16184000 15928000 14399000 17527000 16657000 16294000 18044000 3 3 1 3 3 3 3 3 3 3 3 2597700000 1389200000 1208500000 19265 2251 17695 98268;98269;98270;98271;98272;98273 118972;118973;118974;118975;118976;118977;118978;118979 118975 8 TPELNLDQFHDK Unmodified 1455.6994 0.69940789 834 P27824;P27824-2;P27824-3 CANX Calnexin yes no 0 0 0 0 By MS/MS By MS/MS 4.57 1.18 2 1 2 2 3 4 51.867 51.897 3 1.1375E-07 15373 20211116_3433_TMUAki_TMT10x_P_F5 133.14 102.31 48767000 77910000 380110 126110000 45733000 43072000 37684000 46313000 48517000 46359000 64103000 45406000 72878000 3921500 124010000 43643000 49074000 38980000 46925000 49437000 45275000 61355000 10 10 6 10 10 10 10 10 10 10 10 10429000 16194000 206880 24583000 22143000 20799000 13374000 11260000 11410000 10274000 13993000 9711900 15142000 1153300 24430000 21020000 21208000 13964000 11900000 11785000 10075000 13419000 3 3 2 3 3 3 3 3 3 3 3 38337000 61716000 173220 101530000 23590000 22273000 24309000 35053000 37107000 36086000 50109000 35694000 57736000 2768200 99577000 22624000 27866000 25017000 35026000 37651000 35200000 47936000 7 7 4 7 7 7 7 7 7 7 7 5901100000 2673900000 3227300000 19266 834 17696 98274;98275;98276;98277;98278;98279;98280 118980;118981;118982;118983;118984;118985;118986;118987;118988;118989 118981 10 TPELNLDQFHDKTPYTIMFGPDK Oxidation (M) 2722.2949 0.29486798 834 P27824;P27824-2;P27824-3 CANX Calnexin yes no 0 0 1 1 By MS/MS By MS/MS 5.8 2.48 1 1 2 1 4 1 68.505 68.678 4;5 1.1246E-15 23517 20211116_3446_TMUAki_TMT10x_S_F7 135.86 116.13 32031000 56930000 434600 41544000 38163000 73669000 43093000 47666000 44475000 46872000 45019000 29827000 53065000 3075800 43949000 36738000 72483000 43496000 49752000 45205000 45810000 43412000 8 8 6 8 8 8 8 8 8 8 8 27726000 48558000 296510 35486000 30066000 67002000 36647000 41543000 37841000 40665000 38459000 25817000 45261000 2537000 37596000 29007000 65741000 36865000 43497000 38467000 39752000 37081000 7 7 5 7 7 7 7 7 7 7 7 4305100 8372500 138090 6058200 8096700 6667600 6446200 6122700 6634200 6207200 6560200 4009500 7803800 538720 6353000 7730400 6742700 6630700 6255100 6738300 6058800 6330700 1 1 1 1 1 1 1 1 1 1 1 6079400000 4560600000 1518800000 19267 834 17697 98281;98282;98283;98284;98285 118990;118991;118992;118993;118994;118995;118996;118997 118997 1006 8 TPELNLDQFHDKTPYTIMFGPDK Unmodified 2706.3 0.29995335 834 P27824;P27824-2;P27824-3 CANX Calnexin yes no 0 0 0 1 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 75.792 75.807 4 3.664E-36 24072 20211116_3434_TMUAki_TMT10x_P_F6 183.09 164.84 74634000 121460000 1131400 104770000 98105000 93416000 100050000 39087000 31769000 46257000 82706000 69500000 113270000 7542000 107890000 94184000 94646000 99270000 42698000 37115000 44881000 78206000 12 12 11 12 12 12 12 12 12 12 12 36001000 57916000 774730 50117000 36480000 52767000 47129000 20875000 15800000 23644000 37565000 33526000 54013000 3713500 51718000 35294000 52876000 46278000 22917000 18217000 22978000 35564000 7 7 7 7 7 7 7 7 7 7 7 38633000 63539000 356680 54653000 61625000 40649000 52921000 18212000 15969000 22612000 45141000 35973000 59256000 3828500 56174000 58890000 41770000 52992000 19781000 18898000 21903000 42642000 5 5 4 5 5 5 5 5 5 5 5 13302000000 6406400000 6895700000 19268 834 17697 98286;98287;98288;98289;98290;98291 118998;118999;119000;119001;119002;119003;119004;119005;119006;119007;119008;119009 118999 12 TPELNLDQFHDKTPYTIMFGPDKCGEDYK Unmodified 3458.5799 0.57989296 834 P27824;P27824-2;P27824-3 CANX Calnexin yes no 0 0 0 2 By MS/MS 7 0 1 1 71.428 71.824 5 0.0038459 24395 20211116_3435_TMUAki_TMT10x_P_F7 48.088 42.841 8026200 15136000 67109 9530000 11166000 19065000 14760000 8369800 6406300 8778900 11299000 7473700 14102000 771950 10261000 10801000 18593000 14525000 9061800 7056500 8557100 10748000 2 2 2 2 2 2 2 2 2 2 2 8026200 15136000 67109 9530000 11166000 19065000 14760000 8369800 6406300 8778900 11299000 7473700 14102000 771950 10261000 10801000 18593000 14525000 9061800 7056500 8557100 10748000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1067300000 1067300000 0 19269 834 17698 98292 119010;119011 119011 2 TPEQCPSVVSLLSESYNPHVR Unmodified 2398.1587 0.15870885 2575 Q99460;Q99460-2 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 4 2 62.37 62.635 3 4.616E-28 19021 20211116_3445_TMUAki_TMT10x_S_F6 179.58 170.21 10509000 17363000 131950 16952000 12950000 18144000 12482000 13410000 12916000 13512000 14259000 9785400 16200000 996480 17341000 12411000 18304000 12699000 13877000 13168000 13192000 13713000 7 7 4 7 7 7 7 7 7 7 7 5809200 9177200 40341 8861500 7031400 12095000 7226100 6288000 6207700 6842000 7368800 5409200 8562100 533380 9110900 6749200 11992000 7288100 6702900 6401100 6659500 7072500 4 4 2 4 4 4 4 4 4 4 4 4699500 8186300 91609 8090600 5918900 6048900 5255500 7122200 6707900 6669700 6890000 4376200 7638300 463110 8229900 5662300 6312300 5410500 7173700 6767100 6532600 6640900 3 3 2 3 3 3 3 3 3 3 3 4345600000 2591900000 1753700000 19270 2575 17699 98293;98294;98295;98296;98297;98298 119012;119013;119014;119015;119016;119017;119018;119019 119017 8 TPETLLPFAEAEAFLK Unmodified 1775.9346 0.93455278 1883 Q3KQU3;Q3KQU3-2;Q3KQU3-4;Q3KQU3-3 MAP7D1 MAP7 domain-containing protein 1 yes no 0 0 0 0 By MS/MS 6 0 1 1 81.011 81.011 3 0.0029944 26532 20211116_3445_TMUAki_TMT10x_S_F6 60.158 42.457 2914300 4592300 35338 4550700 3170000 2739600 3465300 1350000 1685700 1920800 3028900 2713800 4285000 278130 4618300 3049100 2871500 3444500 1459800 1840400 1852500 2880300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2914300 4592300 35338 4550700 3170000 2739600 3465300 1350000 1685700 1920800 3028900 2713800 4285000 278130 4618300 3049100 2871500 3444500 1459800 1840400 1852500 2880300 1 1 1 1 1 1 1 1 1 1 1 186340000 0 186340000 19271 1883 17700 98299 119020 119020 1 TPETLLPFAEAEAFLKK Unmodified 1904.0295 0.0295158 1883 Q3KQU3;Q3KQU3-2;Q3KQU3-4;Q3KQU3-3 MAP7D1 MAP7 domain-containing protein 1 yes no 0 0 0 1 By MS/MS 8 0 1 1 79.365 79.335 3 0.068422 25531 20211116_3447_TMUAki_TMT10x_S_F8 37.171 19.682 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19272 1883 17701 98300 119021 119021 1 TPETVVPTALELQPSTSTDRPVTSEPTSQATR Unmodified 3395.7056 0.70562206 1720 Q14676;Q14676-2 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 0 1 By MS/MS 4 0 1 1 56.435 56.586 4 3.519E-06 17063 20211116_3431_TMUAki_TMT10x_P_F4 63.724 54.515 1097000 1867100 16779 1803000 1648100 2478000 1412700 1470300 1346100 1157500 1442400 1021600 1742000 114310 1854000 1575400 2460100 1443200 1536400 1375800 1143300 1388500 1 1 1 1 1 1 1 1 1 1 1 1097000 1867100 16779 1803000 1648100 2478000 1412700 1470300 1346100 1157500 1442400 1021600 1742000 114310 1854000 1575400 2460100 1443200 1536400 1375800 1143300 1388500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 335030000 335030000 0 19273 1720 17702 98301 119022 119022 1 TPFGAYGGLLK Unmodified 1122.6073 0.6073454 1019 P42765 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 67.626 67.353 2 6.2348E-14 24230 20211116_3441_TMUAki_TMT10x_S_F3 145.72 87.047 17381000 31715000 105030 24831000 24982000 34805000 21064000 28822000 23644000 26187000 25398000 16184000 29567000 1632200 25967000 23861000 34707000 21651000 29527000 24003000 25684000 24446000 4 4 3 4 4 4 4 4 4 4 4 11087000 19548000 38996 15462000 14822000 26664000 14473000 17432000 16380000 15843000 15815000 10323000 18225000 994660 16230000 14205000 26265000 14758000 18142000 16560000 15538000 15274000 3 3 2 3 3 3 3 3 3 3 3 6294200 12167000 66031 9368300 10159000 8140900 6590800 11390000 7264800 10345000 9582200 5861000 11342000 637500 9736500 9655700 8442200 6892800 11385000 7443400 10146000 9171900 1 1 1 1 1 1 1 1 1 1 1 1172500000 936130000 236400000 19274 1019 17703 98302;98303;98304;98305 119023;119024;119025;119026;119027 119027 5 TPFLGDMAHIR Oxidation (M) 1272.6285 0.62849155 2831 Q9H857;Q9H857-2;Q9H857-4;Q9H857-3 NT5DC2 5'-nucleotidase domain-containing protein 2 yes no 0 0 1 0 By MS/MS 6 0 1 1 39.348 39.364 3 0.039146 9199 20211116_3434_TMUAki_TMT10x_P_F6 43.549 26.773 886800 1307400 9337.4 1390300 1755700 1627900 1156400 1114200 1022100 916370 1150900 825760 1220300 94393 1416000 1668900 1632200 1200100 1152900 1050300 903120 1106300 1 1 1 1 1 1 1 1 1 1 1 886800 1307400 9337.4 1390300 1755700 1627900 1156400 1114200 1022100 916370 1150900 825760 1220300 94393 1416000 1668900 1632200 1200100 1152900 1050300 903120 1106300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 53370000 53370000 0 19275 2831 17704 98306 119028 119028 2966 1 TPFLLSGTSYK Unmodified 1212.639 0.63903946 1237 P55084;P55084-2 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 63.397 63.059 2 1.6507E-07 22498 20211116_3441_TMUAki_TMT10x_S_F3 140.49 111.34 17801000 31964000 398590 30802000 23396000 29991000 19256000 21188000 21627000 20457000 22825000 16578000 29821000 1925700 31493000 22353000 30405000 19822000 21965000 21940000 20009000 21982000 3 3 3 3 3 3 3 3 3 3 3 10131000 17105000 213690 17038000 14545000 21058000 12990000 11967000 11969000 11978000 13032000 9434700 15961000 1100900 17446000 13921000 21000000 13226000 12627000 12259000 11698000 12539000 2 2 2 2 2 2 2 2 2 2 2 7670000 14859000 184910 13764000 8850800 8932900 6265500 9220800 9657900 8479100 9793100 7142900 13860000 824760 14046000 8432700 9404700 6595500 9338300 9681600 8311700 9442800 1 1 1 1 1 1 1 1 1 1 1 2132400000 1449000000 683390000 19276 1237 17705 98307;98308;98309 119029;119030;119031 119031 3 TPFPPPR Unmodified 810.43882 0.43882351 820 P26640 VARS Valine--tRNA ligase yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 5 3 2 33.757 34.193 2 0.013903 7656 20211116_3436_TMUAki_TMT10x_P_F8 89.703 64.085 505370 860160 14970 757410 639190 786930 583110 490330 533590 543140 625310 470640 802230 55380 780380 612230 793180 592870 515080 548260 528280 600380 3 3 2 3 3 3 3 3 3 3 3 305730 497050 13093 446370 436860 571970 360260 283710 324140 324550 354200 284760 463610 39386 460830 417750 568460 368320 304230 332400 315290 340760 1 1 1 1 1 1 1 1 1 1 1 199630 363110 1876.6 311040 202320 214960 222850 206620 209450 218590 271110 185870 338620 15994 319550 194480 224720 224560 210860 215850 212990 259620 2 2 1 2 2 2 2 2 2 2 2 31161000 15416000 15745000 19277 820 17706 98310;98311;98312;98313;98314 119032;119033;119034;119035 119034 4 TPGAATASASGAAEDGACGCLPNPGTFEECHR Unmodified 3218.3452 0.34515878 457 O96008;O96008-2 TOMM40 Mitochondrial import receptor subunit TOM40 homolog yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 49.282 49.252 4 1.4368E-35 16791 20211116_3441_TMUAki_TMT10x_S_F3 164.62 158.11 4296600 7296500 36046 7601500 6715900 8325300 4925900 6998000 6536100 5895600 6464700 4000600 6809600 403860 7744100 6395400 8406800 5140000 7149100 6576400 5803400 6238500 8 8 4 8 8 8 8 8 8 8 8 2491900 4282100 32872 4459300 5099900 6822800 3698100 4039700 3760600 3381100 3747600 2320400 3996300 266540 4572100 4856300 6742300 3826400 4228100 3822600 3329300 3615600 4 4 3 4 4 4 4 4 4 4 4 1804600 3014400 3174.3 3142200 1615900 1502500 1227700 2958300 2775500 2514600 2717000 1680200 2813200 137320 3172000 1539100 1664500 1313500 2921000 2753800 2474100 2622800 4 4 1 4 4 4 4 4 4 4 4 1139600000 707060000 432510000 19278 457 17707 98315;98316;98317;98318 119036;119037;119038;119039;119040;119041;119042;119043 119040 8 TPGAATASASGAAEDGACGCLPNPGTFEECHRK Unmodified 3346.4401 0.44012179 457 O96008;O96008-2 TOMM40 Mitochondrial import receptor subunit TOM40 homolog yes no 0 0 0 1 By MS/MS By MS/MS 5.14 0.639 1 4 2 4 3 45.072 45.203 4;5 1.0027E-57 12715 20211116_3433_TMUAki_TMT10x_P_F5 202.85 196.95 10374000 17094000 93198 19796000 14779000 15400000 10366000 13010000 12617000 10400000 13469000 9659400 15960000 932560 19939000 14060000 15906000 10815000 13270000 12768000 10265000 12966000 10 10 5 10 10 10 10 10 10 10 10 5901400 9690800 84991 11338000 11247000 12118000 7573200 6872100 6462900 5821400 7268400 5495100 9048800 597960 11462000 10694000 12179000 7839600 7220400 6652100 5728700 6986600 5 5 3 5 5 5 5 5 5 5 5 4472600 7402900 8207.9 8458000 3531200 3282200 2792700 6137700 6154600 4578900 6200300 4164300 6911700 334600 8476700 3365800 3727100 2975500 6049600 6115700 4536200 5979800 5 5 2 5 5 5 5 5 5 5 5 5759400000 3592700000 2166700000 19279 457 17708 98319;98320;98321;98322;98323;98324;98325 119044;119045;119046;119047;119048;119049;119050;119051;119052;119053 119046 10 TPGASAALPGRPGGPPR Unmodified 1557.8376 0.83757312 2150 Q8IWY9;Q8IWY9-1 CDAN1 Codanin-1 yes no 0 0 0 1 By MS/MS By matching 1.33 0.471 2 1 2 1 32.19 32.126 3 1.8466E-07 8342 20211116_3429_TMUAki_TMT10x_P_F2 104.21 81.321 832510 1334400 0 1477000 1530300 1561500 946200 744830 841260 677550 1092100 774980 1245600 58103 1497900 1451300 1567200 987070 796500 869330 664500 1045800 2 2 0 2 2 2 2 2 2 2 2 832510 1334400 0 1477000 1530300 1561500 946200 744830 841260 677550 1092100 774980 1245600 58103 1497900 1451300 1567200 987070 796500 869330 664500 1045800 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 70140000 58244000 11896000 19280 2150 17709 98326;98327;98328 119054;119055 119055 2 TPGDFSYAYQKPEETTRSPDEEDYDYESYEK Unmodified 3738.5646 0.56455629 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 2 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 57.794 57.739 4 1.8749E-35 18024 20211116_3442_TMUAki_TMT10x_S_F4 172.83 163.74 10452000 18371000 39902 21722000 12341000 15100000 10332000 9878100 10903000 11757000 12334000 9732000 17155000 930170 21824000 11785000 15674000 10603000 10363000 11118000 11405000 11854000 3 3 3 3 3 3 3 3 3 3 3 4914900 8319300 21898 9792600 7664600 10939000 6841100 4598300 5155200 5489500 5406700 4576400 7768300 466400 9903100 7329800 10931000 6930100 5021900 5327200 5324700 5207800 2 2 2 2 2 2 2 2 2 2 2 5537000 10052000 18004 11929000 4676100 4161100 3491300 5279800 5747800 6267800 6927400 5155600 9386500 463780 11921000 4455000 4743300 3673200 5341300 5790500 6080800 6646100 1 1 1 1 1 1 1 1 1 1 1 3127700000 2302900000 824790000 19281 1057 17710 98329;98330;98331 119056;119057;119058 119058 3 TPGHPPPPEIPSELGACDFEKPESPR Unmodified 2840.3439 0.34394343 2338 Q92538;Q92538-2;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 yes no 0 0 0 1 By MS/MS 6 0 1 1 52.361 52.462 4 2.545E-05 14439 20211116_3434_TMUAki_TMT10x_P_F6 63.803 59.151 1606700 2835000 0 2781800 2711900 4342200 2188500 2131000 2350000 2038400 2070300 1495700 2645100 106010 2865000 2584400 4277600 2252200 2275500 2373800 1994600 2005800 1 1 0 1 1 1 1 1 1 1 1 1606700 2835000 0 2781800 2711900 4342200 2188500 2131000 2350000 2038400 2070300 1495700 2645100 106010 2865000 2584400 4277600 2252200 2275500 2373800 1994600 2005800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 269350000 269350000 0 19282 2338 17711 98332 119059 119059 1 TPGNNLHEVETAQGQR Unmodified 1749.8394 0.83942362 2214 Q8N9N8 EIF1AD Probable RNA-binding protein EIF1AD yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 30.59 30.348 3 1.9258E-29 9182 20211116_3441_TMUAki_TMT10x_S_F3 193.54 144.49 284740 355940 0 444460 345610 338380 242980 260400 299090 222940 323720 265060 332460 16782 445580 328310 349510 253570 267570 302700 219280 311520 2 2 0 2 2 2 2 2 2 2 2 172440 210610 0 248930 247560 256630 144070 123830 139030 119380 170870 160510 196670 9803.8 251350 234410 257980 151390 132470 142790 116780 163840 1 1 0 1 1 1 1 1 1 1 1 112300 145330 0 195530 98049 81753 98907 136570 160070 103560 152850 104540 135790 6978.7 194230 93897 91535 102170 135100 159910 102500 147670 1 1 0 1 1 1 1 1 1 1 1 51029000 23475000 27554000 19283 2214 17712 98333;98334 119060;119061 119061 2 TPGPGAQSALR Unmodified 1053.5567 0.55670682 1343 P62263 RPS14 40S ribosomal protein S14 yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 30.941 30.926 2 5.9781E-11 6728 20211116_3431_TMUAki_TMT10x_P_F4 166.66 125.43 1604200 2801000 10108 2448100 3072100 3457100 2056400 1467100 1927700 1327200 2072800 1493800 2612300 162980 2537400 2920700 3414900 2135100 1587900 1971900 1302000 1995100 2 2 2 2 2 2 2 2 2 2 2 1604200 2801000 10108 2448100 3072100 3457100 2056400 1467100 1927700 1327200 2072800 1493800 2612300 162980 2537400 2920700 3414900 2135100 1587900 1971900 1302000 1995100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 177970000 177970000 0 19284 1343 17713 98335;98336 119062;119063 119062 2 TPGQVLSLISSLGFNTPIAEK Unmodified 2171.1838 0.18378461 2479 Q96GX5;Q96GX5-2;Q96GX5-3 MASTL Serine/threonine-protein kinase greatwall yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.943 1 2 2 1 82.268 82.272 3 5.8734E-14 27037 20211116_3445_TMUAki_TMT10x_S_F6 127.58 110.09 1837700 3032200 31711 3252300 1872900 3009200 2173900 1750300 1649600 1855300 2669900 1711300 2830200 175080 3298700 1804800 3052300 2173100 1846300 1737400 1807700 2543900 4 4 2 4 4 4 4 4 4 4 4 1345500 2181200 31711 2448200 1310000 2522600 1592500 1405300 1262500 1372500 2034700 1253000 2036300 136890 2479800 1264800 2540200 1590400 1484200 1326200 1341800 1938900 3 3 2 3 3 3 3 3 3 3 3 492250 851050 0 804100 562890 486640 581360 345050 387150 482810 635190 458310 793940 38193 818880 539960 512160 582720 362090 411160 465860 605070 1 1 0 1 1 1 1 1 1 1 1 201150000 108040000 93110000 19285 2479 17714 98337;98338;98339 119064;119065;119066;119067 119067 4 TPGTGSLAAAVETASGR Unmodified 1544.7794 0.77944912 2472 Q96GD0 PDXP Pyridoxal phosphate phosphatase yes yes 0 0 0 0 By MS/MS By MS/MS 5.8 0.4 1 4 3 2 53.354 53.482 2;3 6.6767E-43 15239 20211116_3445_TMUAki_TMT10x_S_F6 228.66 195.98 18410000 29431000 105530 27954000 25316000 33904000 19709000 28922000 28527000 25629000 25787000 17141000 27456000 1591400 28711000 24131000 34060000 20558000 29559000 28538000 25166000 24960000 5 5 3 5 5 5 5 5 5 5 5 9149100 15303000 94709 14734000 17452000 26149000 13335000 15514000 15046000 13673000 13729000 8519100 14277000 923470 15242000 16634000 25696000 13795000 16256000 15185000 13430000 13285000 3 3 2 3 3 3 3 3 3 3 3 9260700 14128000 10825 13220000 7863400 7754800 6373700 13408000 13481000 11956000 12058000 8622000 13179000 667940 13469000 7497100 8364200 6763000 13304000 13353000 11737000 11676000 2 2 1 2 2 2 2 2 2 2 2 2340100000 1127300000 1212900000 19286 2472 17715 98340;98341;98342;98343;98344 119068;119069;119070;119071;119072 119072 5 TPGYVVTPHTMNLLK Oxidation (M) 1685.8811 0.88107742 1065 P47897;P47897-2 QARS Glutamine--tRNA ligase yes no 0 0 1 0 By MS/MS By MS/MS 1 0 2 1 1 47.712 47.591 3 1.4458E-06 13023 20211116_3428_TMUAki_TMT10x_P_F1 103.3 84.884 3179400 5480400 47329 5957700 4153100 5141800 3042600 6108000 6238700 4704200 5391100 2960700 5115500 321340 6031900 3957100 5310200 3243200 6119400 6176800 4652200 5226900 3 3 3 3 3 3 3 3 3 3 3 1023400 1709100 29898 1913300 2382400 3370900 1567800 2040600 2125300 1523200 1769500 953130 1595600 131750 1959300 2265700 3314300 1650100 2126400 2125200 1509000 1718000 1 1 1 1 1 1 1 1 1 1 1 2155900 3771200 17431 4044300 1770700 1770900 1474800 4067400 4113300 3180900 3621600 2007500 3520000 189590 4072600 1691400 1995900 1593100 3993000 4051700 3143200 3508900 2 2 2 2 2 2 2 2 2 2 2 396410000 280330000 116090000 19287 1065 17716 98345;98346 119073;119074;119075 119073 1386 3 TPHPVLTPVAANQAK Unmodified 1542.8518 0.85182621 941 P35658;P35658-3;P35658-4;P35658-2;P35658-5 NUP214 Nuclear pore complex protein Nup214 yes no 0 0 0 0 By MS/MS 1 0 1 1 37.268 37.182 3 3.9087E-05 10830 20211116_3439_TMUAki_TMT10x_S_F1 93.228 70.311 209140 347680 689.59 396350 166930 173280 169760 294370 346720 258550 318640 194730 324600 17391 397570 160170 193000 177520 292110 343990 253990 308250 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 209140 347680 689.59 396350 166930 173280 169760 294370 346720 258550 318640 194730 324600 17391 397570 160170 193000 177520 292110 343990 253990 308250 1 1 1 1 1 1 1 1 1 1 1 26792000 0 26792000 19288 941 17717 98347 119076 119076 1 TPHVLVLGSGVYR Unmodified 1396.7827 0.78268401 831 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 46.002 45.84 3 1.3484E-06 13918 20211116_3429_TMUAki_TMT10x_P_F2 115.05 101.62 6826300 10429000 107180 12538000 9852000 8454900 7138000 6673100 6372900 6077900 8719600 6356800 9739600 708210 12581000 9384800 8825100 7358600 6856900 6600100 5960500 8338800 6 6 6 6 6 6 6 6 6 6 6 2870100 4337400 20222 4966800 5987800 5898100 3918000 3046600 3081700 2829800 3809200 2672500 4049600 300460 5036400 5690600 5887100 4056500 3235000 3197500 2772600 3652000 3 3 3 3 3 3 3 3 3 3 3 3956300 6092000 86958 7571200 3864100 2556800 3220000 3626500 3291200 3248200 4910400 3684300 5690000 407750 7544400 3694200 2938000 3302100 3621900 3402600 3187900 4686800 3 3 3 3 3 3 3 3 3 3 3 679120000 437410000 241710000 19289 831 17718 98348;98349;98350;98351;98352 119077;119078;119079;119080;119081;119082;119083 119078 7 TPIGSFLGSLSLLPATK Unmodified 1700.9713 0.97127264 795 P24752;P24752-2 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.6 1.02 2 2 4 2 5 5 80.889 80.894 2;3 1.1567E-53 26473 20211116_3445_TMUAki_TMT10x_S_F6 275.85 242.8 37315000 56727000 142880 53510000 43811000 48101000 46230000 34134000 31216000 31794000 42841000 34742000 52920000 2937200 54735000 42052000 49021000 46302000 35340000 32826000 31148000 40967000 11 11 5 11 11 11 11 11 11 11 11 16289000 23763000 84744 23313000 14879000 25277000 17393000 15352000 14608000 14961000 19172000 15166000 22172000 1280800 23845000 14327000 25406000 17425000 16098000 15145000 14628000 18353000 5 5 2 5 5 5 5 5 5 5 5 21026000 32964000 58138 30197000 28931000 22824000 28837000 18782000 16608000 16832000 23669000 19576000 30748000 1656400 30891000 27725000 23615000 28877000 19242000 17681000 16520000 22614000 6 6 3 6 6 6 6 6 6 6 6 9799900000 4619900000 5180000000 19290 795 17719 98353;98354;98355;98356;98357;98358;98359;98360;98361;98362 119084;119085;119086;119087;119088;119089;119090;119091;119092;119093;119094 119093 11 TPIIIIPAATTSLITMLNAK Oxidation (M) 2097.2119 0.21191362 1990 Q6P1J9 CDC73 Parafibromin yes yes 0 0 1 0 By MS/MS 6.5 0.5 1 1 2 80.919 80.923 3 0.0019267 26120 20211116_3434_TMUAki_TMT10x_P_F6 59.281 47.842 4538000 7842600 12428 6702500 4339700 9825400 5382400 5177200 4805700 6254500 6274500 4225400 7313700 212790 6964900 4188000 9712400 5387200 5530600 4966300 6064000 6007300 2 2 1 2 2 2 2 2 2 2 2 4538000 7842600 12428 6702500 4339700 9825400 5382400 5177200 4805700 6254500 6274500 4225400 7313700 212790 6964900 4188000 9712400 5387200 5530600 4966300 6064000 6007300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 786990000 786990000 0 19291 1990 17720 98363;98364 119095;119096 119096 2542 2 TPIIIIPAATTSLITMLNAK Unmodified 2081.217 0.21699899 1990 Q6P1J9 CDC73 Parafibromin yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 82.71 82.718 3 3.2679E-19 29378 20211116_3446_TMUAki_TMT10x_S_F7 158.98 138.31 4887400 8246300 21894 7841200 6175000 4738600 6051800 2878600 2530700 3204500 5446200 4550800 7693100 304340 7981600 5919000 4977000 6036000 3030400 2832100 3116200 5163500 6 6 3 6 6 6 6 6 6 6 6 440400 676330 0 706840 462560 688460 551500 243670 249730 308900 463770 410050 631200 35888 718660 445700 692500 545420 272140 274860 299000 440760 1 1 0 1 1 1 1 1 1 1 1 4447000 7569900 21894 7134400 5712400 4050200 5500300 2634900 2280900 2895600 4982400 4140800 7061900 268450 7262900 5473300 4284500 5490600 2758200 2557200 2817200 4722800 5 5 3 5 5 5 5 5 5 5 5 459630000 127370000 332260000 19292 1990 17720 98365;98366;98367;98368;98369;98370 119097;119098;119099;119100;119101;119102;119103 119100 7 TPIVGQPSIPGGPVR Unmodified 1473.8304 0.83036248 41 CON__P12763 yes yes 0 0 0 0 By MS/MS By MS/MS 4.55 2.89 5 4 3 4 4 9 11 50.136 50.201 2;3 1.8361E-43 13620 20211116_3447_TMUAki_TMT10x_S_F8 264.84 233.46 + 99067000 171890000 1153400 195470000 166420000 173830000 111010000 182380000 241040000 156750000 171360000 92245000 160480000 9632800 197430000 158210000 178610000 119520000 184230000 237050000 154150000 167460000 29 29 18 29 29 29 29 29 29 29 29 44910000 72666000 843140 86940000 113720000 136640000 76009000 73834000 96043000 64067000 71425000 41821000 67859000 5328300 88428000 108130000 134720000 79691000 77946000 95958000 62974000 69663000 12 12 7 12 12 12 12 12 12 12 12 54157000 99229000 310280 108530000 52704000 37189000 34997000 108540000 145000000 92683000 99937000 50424000 92626000 4304500 109000000 50079000 43890000 39830000 106280000 141100000 91172000 97800000 17 17 11 17 17 17 17 17 17 17 17 52749000000 28247000000 24502000000 19293 41 17721 98371;98372;98373;98374;98375;98376;98377;98378;98379;98380;98381;98382;98383;98384;98385;98386;98387;98388;98389;98390 119104;119105;119106;119107;119108;119109;119110;119111;119112;119113;119114;119115;119116;119117;119118;119119;119120;119121;119122;119123;119124;119125;119126;119127;119128;119129;119130;119131;119132;119133;119134 119134 31 TPKEEAQSLEDLAGFK Unmodified 1761.8785 0.87849447 1039 P46013;P46013-2 MKI67 Antigen KI-67 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 3 1 69.272 69.175 3 1.0284E-21 22732 20211116_3442_TMUAki_TMT10x_S_F4 147.92 119.62 10680000 18389000 398310 17395000 11992000 20302000 13911000 10379000 9986700 10492000 12442000 9946900 17156000 1275000 17860000 11571000 20280000 13889000 11057000 10419000 10242000 11926000 2 2 2 2 2 2 2 2 2 2 2 10680000 18389000 398310 17395000 11992000 20302000 13911000 10379000 9986700 10492000 12442000 9946900 17156000 1275000 17860000 11571000 20280000 13889000 11057000 10419000 10242000 11926000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1002500000 1002500000 0 19294 1039 17722 98391;98392;98393;98394 119135;119136;119137;119138 119138 4 TPLFDQIIDMLR Oxidation (M) 1476.7647 0.76465068 1229 P54886;P54886-2 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes no 0 0 1 0 By MS/MS By MS/MS 7.75 0.433 1 3 2 2 80.406 80.419 2;3 0.0027871 26544 20211116_3436_TMUAki_TMT10x_P_F8 78.683 57.594 2133400 3219500 0 3008100 1717300 3815400 2124300 2421800 2516100 2733600 2569300 1985900 3003400 107920 3095800 1652800 3805700 2145600 2542000 2544500 2656900 2476800 1 1 0 1 1 1 1 1 1 1 1 2133400 3219500 0 3008100 1717300 3815400 2124300 2421800 2516100 2733600 2569300 1985900 3003400 107920 3095800 1652800 3805700 2145600 2542000 2544500 2656900 2476800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1252100000 1252100000 0 19295 1229 17723 98395;98396;98397;98398 119139;119140;119141 119139 1652 3 TPLHEIALSIK Unmodified 1220.7129 0.71287311 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 2.18 1 1 3 3 4 4 53.635 53.869 2;3 2.9502E-14 16771 20211116_3435_TMUAki_TMT10x_P_F7 183.64 136.57 67740000 110080000 1990400 126510000 95308000 112570000 74145000 102130000 85771000 84049000 100420000 63087000 102780000 7733400 127700000 90966000 115310000 76674000 103820000 87268000 82832000 96421000 13 13 8 13 13 13 13 13 13 13 13 40425000 61579000 733810 71696000 68416000 88330000 52757000 49476000 47118000 46704000 51789000 37645000 57497000 4355600 72676000 65246000 88086000 54158000 52181000 48347000 45728000 49814000 8 8 5 8 8 8 8 8 8 8 8 27315000 48503000 1256600 54819000 26892000 24242000 21387000 52653000 38653000 37345000 48635000 25442000 45282000 3377800 55021000 25720000 27220000 22517000 51642000 38921000 37104000 46607000 5 5 3 5 5 5 5 5 5 5 5 12195000000 8432500000 3762800000 19296 1546 17724 98399;98400;98401;98402;98403;98404;98405;98406 119142;119143;119144;119145;119146;119147;119148;119149;119150;119151;119152;119153;119154 119145 13 TPLLGDGPR Unmodified 924.50288 0.50288033 2750 Q9C0J8 WDR33 pre-mRNA 3' end processing protein WDR33 yes yes 0 0 0 0 By matching By MS/MS 3.5 0.5 1 1 1 1 38.815 38.927 2 0.080442 10467 20211116_3442_TMUAki_TMT10x_S_F4 49.423 19.85 442300 741640 2060 800290 404500 377600 403750 520590 548560 445470 652370 411840 692240 38060 805960 387960 413960 414070 519840 555410 438170 626110 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 442300 741640 2060 800290 404500 377600 403750 520590 548560 445470 652370 411840 692240 38060 805960 387960 413960 414070 519840 555410 438170 626110 1 1 1 1 1 1 1 1 1 1 1 22932000 4118300 18814000 19297 2750 17725 98407;98408 119155 119155 1 TPLPSAPVLPELTAIPLTAYGPMAAAAAAAAVVR Oxidation (M) 3286.7999 0.79992056 210 O43347 MSI1 RNA-binding protein Musashi homolog 1 yes yes 0 0 1 0 By MS/MS By MS/MS 3.44 0.831 1 4 3 1 3 6 82.012 81.992 3;4 1.6445E-23 27864 20211116_3442_TMUAki_TMT10x_S_F4 131.09 124.51 4626000 7248800 27272 7222800 5004900 7217800 5081000 4909100 4645300 4488100 5607400 4307400 6763800 173570 7370200 4802000 7301500 5136400 5095200 4779000 4400600 5379500 10 10 3 10 10 10 10 10 10 10 10 2395300 3750300 8880.3 3934700 2314800 4612200 2334300 2890400 2379900 2299600 2836600 2230300 3500100 63676 4011200 2220000 4618100 2368200 3008000 2435400 2270300 2722200 4 4 1 4 4 4 4 4 4 4 4 2230700 3498400 18392 3288100 2690100 2605600 2746700 2018700 2265400 2188400 2770900 2077200 3263600 109890 3359100 2581900 2683300 2768200 2087200 2343600 2130300 2657300 6 6 2 6 6 6 6 6 6 6 6 7127000000 3466300000 3660700000 19298 210 17726 98409;98410;98411;98412;98413;98414;98415;98416;98417 119156;119157;119158;119159;119160;119161;119162;119163;119164;119165 119162 166 10 TPLPSAPVLPELTAIPLTAYGPMAAAAAAAAVVR Unmodified 3270.805 0.80500594 210 O43347 MSI1 RNA-binding protein Musashi homolog 1 yes yes 0 0 0 0 By MS/MS 5 0.816 1 1 1 3 83.539 83.544 4 3.2188E-11 27296 20211116_3444_TMUAki_TMT10x_S_F5 95.878 88.767 1821100 2934500 0 3140100 2324000 1833300 2041400 1620400 1562600 1834600 2108600 1695400 2739000 128010 3169400 2219300 1943400 2070700 1664700 1630000 1782900 2017100 3 3 0 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1821100 2934500 0 3140100 2324000 1833300 2041400 1620400 1562600 1834600 2108600 1695400 2739000 128010 3169400 2219300 1943400 2070700 1664700 1630000 1782900 2017100 3 3 0 3 3 3 3 3 3 3 3 273350000 0 273350000 19299 210 17726 98418;98419;98420 119166;119167;119168 119167 3 TPLQVAK Unmodified 755.45414 0.45413923 362 O75832 PSMD10 26S proteasome non-ATPase regulatory subunit 10 yes yes 0 0 0 0 By MS/MS 7 0 1 1 37.833 38.271 2 0.060354 10887 20211116_3435_TMUAki_TMT10x_P_F7 63.486 19.351 614770 990540 0 1007500 1167300 1222000 746920 594800 630360 532150 772360 572390 924340 55676 1029800 1108500 1217600 776010 634530 651420 522310 740670 1 1 0 1 1 1 1 1 1 1 1 614770 990540 0 1007500 1167300 1222000 746920 594800 630360 532150 772360 572390 924340 55676 1029800 1108500 1217600 776010 634530 651420 522310 740670 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 84149000 84149000 0 19300 362 17727 98421 119169 119169 1 TPLRPLDPTR Unmodified 1164.6615 0.66150624 1511 Q04637;Q04637-3;Q04637-8;Q04637-5;Q04637-4;Q04637-9;Q04637-6;Q04637-7 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 34.772 34.766 3 0.00034317 9802 20211116_3439_TMUAki_TMT10x_S_F1 101.71 66.887 2214500 3408500 0 3873500 3556700 3187100 2393800 1885900 2022400 1923700 2676600 2061700 3182200 185870 3908500 3380000 3259900 2477400 1984200 2096900 1877200 2561800 2 2 0 2 2 2 2 2 2 2 2 1378400 2065200 0 2345000 2869100 2583100 1620600 1253400 1327800 1274300 1734300 1283300 1928100 119680 2376100 2718600 2586900 1700100 1342100 1378100 1243700 1660400 1 1 0 1 1 1 1 1 1 1 1 836080 1343300 0 1528400 687600 604000 773150 632450 694590 649430 942330 778470 1254100 66182 1532400 661390 672980 777340 642110 718850 633570 901360 1 1 0 1 1 1 1 1 1 1 1 317000000 176810000 140200000 19301 1511 17728 98422;98423 119170;119171 119171 2 TPLSAAAHTHPVYCVNVVGTQNAHNLITVSTDGK Unmodified 3571.7842 0.78416393 117 O14576;O14576-2;O14576-4;O14576-3;O14576-5 DYNC1I1 Cytoplasmic dynein 1 intermediate chain 1 yes no 0 0 0 0 By MS/MS 2 0 1 1 56.792 56.542 5 1.6448E-06 18269 20211116_3429_TMUAki_TMT10x_P_F2 66.479 0.78939 1680100 2564500 0 2699800 2207700 3674400 2069600 2034100 2260200 2124900 2140800 1564300 2393500 138720 2759300 2112800 3646300 2112400 2153700 2286800 2071500 2068800 1 1 0 1 1 1 1 1 1 1 1 1680100 2564500 0 2699800 2207700 3674400 2069600 2034100 2260200 2124900 2140800 1564300 2393500 138720 2759300 2112800 3646300 2112400 2153700 2286800 2071500 2068800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1725300000 1725300000 0 19302 117 17729 98424 119172 119172 1 TPLSEAEFEEIMNR Oxidation (M) 1680.7665 0.76650118 1856 Q16630;Q16630-2;Q16630-3 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes no 0 0 1 0 By MS/MS By MS/MS 2.5 0.957 2 4 4 2 5 7 58.756 58.527 2;3 5.8849E-14 17487 20211116_3428_TMUAki_TMT10x_P_F1 145 136.89 33639000 57701000 240640 55227000 39702000 52135000 36294000 43177000 40850000 43189000 45789000 31320000 53832000 2807700 56469000 37978000 53101000 37134000 44352000 41534000 42180000 44018000 14 14 8 14 14 14 14 14 14 14 14 17020000 28202000 123030 27852000 21022000 34560000 19464000 21527000 20103000 21766000 22693000 15847000 26315000 1397500 28539000 20113000 34501000 19844000 22552000 20515000 21248000 21811000 7 7 4 7 7 7 7 7 7 7 7 16618000 29498000 117610 27374000 18680000 17574000 16831000 21650000 20747000 21424000 23096000 15473000 27517000 1410200 27930000 17865000 18600000 17290000 21800000 21019000 20933000 22207000 7 7 4 7 7 7 7 7 7 7 7 5624000000 2359800000 3264200000 19303 1856 17730 98425;98426;98427;98428;98429;98430;98431;98432;98433;98434;98435;98436 119173;119174;119175;119176;119177;119178;119179;119180;119181;119182;119183;119184;119185;119186;119187 119175 2470 15 TPLSEAEFEEIMNR Unmodified 1664.7716 0.77158655 1856 Q16630;Q16630-2;Q16630-3 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes no 0 0 0 0 By MS/MS By MS/MS 2.17 0.986 4 3 4 1 5 7 71.536 71.371 2;3 3.426E-26 24900 20211116_3430_TMUAki_TMT10x_P_F3 199.12 148.93 43967000 73825000 565750 71252000 52891000 61269000 55706000 37708000 38617000 41856000 54953000 40941000 68877000 4259400 72721000 50817000 62503000 55828000 39652000 40614000 40708000 52505000 10 10 9 10 10 10 10 10 10 10 10 17317000 28433000 248520 27475000 18502000 31151000 20277000 14634000 15467000 16293000 20959000 16126000 26528000 1683900 28152000 17800000 31136000 20326000 15762000 16140000 15845000 20048000 3 3 3 3 3 3 3 3 3 3 3 26649000 45391000 317230 43777000 34389000 30119000 35428000 23074000 23150000 25562000 33994000 24815000 42349000 2575400 44569000 33017000 31367000 35502000 23890000 24474000 24863000 32457000 7 7 6 7 7 7 7 7 7 7 7 3043200000 727850000 2315400000 19304 1856 17730 98437;98438;98439;98440;98441;98442;98443;98444;98445;98446;98447;98448 119188;119189;119190;119191;119192;119193;119194;119195;119196;119197;119198;119199;119200;119201 119192 14 TPLVPGFECSGIVEALGDSVK Unmodified 2174.0929 0.092920692 2867 Q9HCJ6 VAT1L Synaptic vesicle membrane protein VAT-1 homolog-like yes yes 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 79.421 79.437 3 0.10098 25887 20211116_3445_TMUAki_TMT10x_S_F6 24.095 6.6065 2981700 5184800 0 4497200 3952900 3855000 4311500 3370200 3306300 3332800 4108800 2775400 4835400 155410 4626900 3792400 3956000 4323500 3449900 3436000 3256500 3938800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2981700 5184800 0 4497200 3952900 3855000 4311500 3370200 3306300 3332800 4108800 2775400 4835400 155410 4626900 3792400 3956000 4323500 3449900 3436000 3256500 3938800 1 1 0 1 1 1 1 1 1 1 1 1466500000 0 1466500000 19305 2867 17731 98449;98450 119202 119202 1 TPMENIGLQDSLLSR Oxidation (M) 1688.8403 0.84033482 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 1 0 By MS/MS By MS/MS 4.4 0.49 3 2 2 3 57.027 57.13 2;3 1.1014E-09 17701 20211116_3442_TMUAki_TMT10x_S_F4 126.88 105.65 23499000 39805000 662810 40011000 29456000 35631000 24924000 34998000 34171000 31886000 33636000 21884000 37143000 2547000 40738000 28163000 36554000 25805000 35522000 34340000 31270000 32464000 10 10 7 10 10 10 10 10 10 10 10 9491300 15444000 217910 15145000 13544000 21288000 11678000 13936000 14495000 13032000 12823000 8838500 14410000 983910 15563000 12949000 21142000 12030000 14513000 14564000 12765000 12422000 4 4 2 4 4 4 4 4 4 4 4 14008000 24361000 444900 24866000 15912000 14343000 13247000 21062000 19676000 18854000 20813000 13046000 22733000 1563100 25175000 15214000 15412000 13775000 21009000 19776000 18505000 20042000 6 6 5 6 6 6 6 6 6 6 6 4071700000 1866100000 2205600000 19306 799 17732 98451;98452;98453;98454;98455 119203;119204;119205;119206;119207;119208;119209;119210;119211;119212 119208 947 10 TPMENIGLQDSLLSR Unmodified 1672.8454 0.8454202 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 0 By MS/MS By MS/MS 4.75 0.433 1 3 1 3 66.477 66.444 2;3 2.6357E-37 20257 20211116_3444_TMUAki_TMT10x_S_F5 238.93 192.6 5564400 10486000 19674 9579400 7108600 5337500 5435300 8513100 7304200 6486600 8197000 5180900 9781300 469370 9773200 6773100 5770500 5658600 8434600 7380600 6418700 7879700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5564400 10486000 19674 9579400 7108600 5337500 5435300 8513100 7304200 6486600 8197000 5180900 9781300 469370 9773200 6773100 5770500 5658600 8434600 7380600 6418700 7879700 2 2 1 2 2 2 2 2 2 2 2 1436200000 0 1436200000 19307 799 17732 98456;98457;98458;98459 119213;119214;119215 119214 3 TPMGLLLEALGQEQEAGS Unmodified 1842.9033 0.90332901 293 O60831 PRAF2 PRA1 family protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 3.69 2.05 2 4 2 4 2 1 1 8 8 84.61 84.61 2;3 6.7308E-06 31058 20211116_3441_TMUAki_TMT10x_S_F3 86.378 76.456 3193100 5205200 20688 5018100 3763000 5218700 3984600 3428500 3262300 3645900 4364500 2973000 4856300 239940 5135500 3613100 5263900 4007800 3582700 3389600 3551900 4176200 13 13 8 13 13 13 13 13 13 13 13 1830000 2954800 8717.8 2790000 1846400 3685900 2305000 1903200 1916700 2083700 2585300 1703900 2756500 121900 2871300 1781500 3659700 2302100 2030400 1990600 2027600 2473200 7 7 4 7 7 7 7 7 7 7 7 1363100 2250500 11970 2228100 1916600 1532800 1679600 1525300 1345700 1562300 1779200 1269200 2099800 118040 2264200 1831600 1604200 1705700 1552300 1399000 1524300 1703000 6 6 4 6 6 6 6 6 6 6 6 499050000 306560000 192480000 19308 293 17733 98460;98461;98462;98463;98464;98465;98466;98467;98468;98469;98470;98471;98472;98473;98474;98475 119216;119217;119218;119219;119220;119221;119222;119223;119224;119225;119226;119227;119228;119229;119230;119231 119226 16 TPMSVLQQAGGSMMDGPGPR 3 Oxidation (M) 2063.9074 0.90744488 3216 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 0 0 3 0 By MS/MS By MS/MS 6 0 2 1 1 42.329 42.432 3 0.0043775 10899 20211116_3445_TMUAki_TMT10x_S_F6 53.625 46.423 704980 1130100 12608 1303500 1195300 1383600 897040 1160100 1321200 978860 1075300 656490 1055200 75771 1318800 1139300 1399600 938630 1185400 1316800 963480 1045000 2 2 1 2 2 2 2 2 2 2 2 387420 632730 12608 737450 946200 1121800 665540 638140 756710 570920 587390 360820 590800 51696 750670 900970 1108300 692590 671210 759830 560360 571880 1 1 1 1 1 1 1 1 1 1 1 317560 497400 0 566090 249060 261820 231500 522000 564490 407940 487950 295670 464380 24075 568110 238290 291340 246040 514180 556980 403120 473070 1 1 0 1 1 1 1 1 1 1 1 150680000 81721000 68960000 19309 3216 17734 98476;98477 119232;119233 119233 3197;3198;3199 2 TPNTFAVCTEHR Unmodified 1431.6565 0.65649722 1560 Q12756;Q12756-3;Q12756-2 KIF1A Kinesin-like protein KIF1A yes no 0 0 0 0 By MS/MS 5 0 1 1 33.077 33.022 3 0.00068565 7904 20211116_3433_TMUAki_TMT10x_P_F5 76.588 66.262 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19310 1560 17735 98478 119234 119234 1 TPPGLQHEYAAPADYFR Unmodified 1931.9166 0.91661131 2697 Q9BVL2;Q9BVL2-2;Q9BVL2-3 NUPL1 Nucleoporin p58/p45 yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 51.634 51.875 3 1.3098E-07 14173 20211116_3434_TMUAki_TMT10x_P_F6 104.03 92.413 10256000 18423000 118640 18523000 16066000 17834000 12306000 14812000 13969000 13384000 14607000 9549900 17191000 1013600 18879000 15316000 18143000 12730000 15170000 14161000 13131000 14071000 4 4 3 4 4 4 4 4 4 4 4 5625000 9874300 13273 10336000 10731000 13307000 8278300 8085600 7623500 7472500 7818500 5237300 9215500 521590 10556000 10227000 13255000 8505000 8466000 7791100 7323300 7536200 2 2 1 2 2 2 2 2 2 2 2 4630900 8548800 105360 8187600 5334800 4527300 4027300 6726700 6345900 5912000 6788500 4312600 7975500 491990 8323400 5088700 4887300 4225200 6703900 6370100 5807500 6534900 2 2 2 2 2 2 2 2 2 2 2 720000000 271900000 448100000 19311 2697 17736 98479;98480;98481 119235;119236;119237;119238 119235 4 TPPLITDYR Unmodified 1074.571 0.5709599 625 P11388;P11388-2;P11388-3;P11388-4 TOP2A DNA topoisomerase 2-alpha yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 48.125 48.274 2 0.0010677 13079 20211116_3445_TMUAki_TMT10x_S_F6 103.8 75.317 8991100 14990000 53846 18125000 16218000 16215000 11343000 12405000 12756000 11556000 13220000 8371600 13999000 847770 18241000 15428000 16551000 11804000 12779000 12932000 11321000 12739000 4 4 2 4 4 4 4 4 4 4 4 4885300 8247300 0 10172000 13157000 13059000 8462900 6906300 7172800 6449800 7333500 4548300 7702800 471830 10284000 12495000 12987000 8789800 7318700 7359300 6318000 7069400 2 2 0 2 2 2 2 2 2 2 2 4105800 6742300 53846 7953500 3060100 3156600 2880000 5498200 5583400 5106300 5886900 3823300 6295800 375930 7956600 2932900 3564200 3014400 5460300 5572600 5003200 5669500 2 2 2 2 2 2 2 2 2 2 2 991510000 583500000 408010000 19312 625 17737 98482;98483;98484;98485 119239;119240;119241;119242 119242 4 TPPLITDYREYHTDTTVK Unmodified 2149.0691 0.069148783 625 P11388;P11388-2;P11388-3;P11388-4 TOP2A DNA topoisomerase 2-alpha yes no 0 0 0 1 By MS/MS By MS/MS 6 0.707 1 2 1 1 3 48.818 49.047 4 0.00015031 13365 20211116_3445_TMUAki_TMT10x_S_F6 76.118 59.625 37464000 60697000 388950 59939000 42192000 51471000 41595000 51947000 61610000 48804000 53964000 34885000 56634000 3465400 61075000 40459000 52968000 42842000 52698000 61530000 47794000 52294000 5 5 4 5 5 5 5 5 5 5 5 5721900 9080200 731.72 8715000 11828000 11921000 6221800 7617900 8543900 6685300 7252300 5327700 8471500 560580 8964500 11200000 11850000 6676100 7934600 8544500 6567700 7036000 1 1 1 1 1 1 1 1 1 1 1 31742000 51617000 388220 51224000 30364000 39550000 35373000 44329000 53066000 42119000 46712000 29557000 48163000 2904800 52110000 29259000 41119000 36166000 44763000 52986000 41226000 45258000 4 4 3 4 4 4 4 4 4 4 4 2723600000 989510000 1734100000 19313 625 17738 98486;98487;98488;98489 119243;119244;119245 119245 3 TPPPELLQTLTAVGGIGQLTAAK Unmodified 2275.2787 0.27874763 1023 P42858 HTT Huntingtin yes yes 0 0 0 0 By matching By MS/MS 3 0 2 1 1 80.475 80.425 3 3.1866E-11 29399 20211116_3441_TMUAki_TMT10x_S_F3 110.26 92.338 2400500 3756100 0 4042700 2509800 2537700 3061900 1786300 1562000 1992700 2687400 2235100 3505900 194660 4081400 2420000 2661200 3030500 1860200 1694600 1937700 2557600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2400500 3756100 0 4042700 2509800 2537700 3061900 1786300 1562000 1992700 2687400 2235100 3505900 194660 4081400 2420000 2661200 3030500 1860200 1694600 1937700 2557600 1 1 0 1 1 1 1 1 1 1 1 1364500000 408950000 955500000 19314 1023 17739 98490;98491 119246 119246 1 TPPPVLIFAEK Unmodified 1210.6962 0.69616041 3143 Q9UJV9 DDX41 Probable ATP-dependent RNA helicase DDX41 yes yes 0 0 0 0 By MS/MS 7 0 1 1 71.057 71.453 2 0.0046359 24167 20211116_3435_TMUAki_TMT10x_P_F7 70.977 48.829 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19315 3143 17740 98492 119247 119247 1 TPQAPASANLVGPR Unmodified 1377.7365 0.7364621 3216 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 7.43 0.728 1 2 4 5 2 37.357 37.685 2;3 7.6449E-06 10356 20211116_3435_TMUAki_TMT10x_P_F7 104.49 79.637 4665800 7183200 115050 9938000 14088000 11907000 6565500 8125700 9640700 6587000 8494100 4344800 6713000 586130 9973300 13323000 11924000 7148200 8406400 9632500 6496600 8229400 9 9 6 9 9 9 9 9 9 9 9 3512400 5426100 97361 7434300 13284000 11190000 5837100 6088500 7174600 4949400 6427200 3270900 5070600 489920 7498500 12554000 11054000 6351600 6413800 7213800 4880800 6223300 7 7 5 7 7 7 7 7 7 7 7 1153300 1757100 17688 2503700 803300 716670 728420 2037200 2466100 1637600 2066800 1073900 1642400 96205 2474800 768720 870000 796580 1992700 2418600 1615800 2006100 2 2 1 2 2 2 2 2 2 2 2 308290000 265480000 42809000 19316 3216 17741 98493;98494;98495;98496;98497;98498;98499 119248;119249;119250;119251;119252;119253;119254 119252 7 TPQASTYSYETSDLCYTAEK Unmodified 2313.9947 0.99472279 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 54.731 54.897 3 1.1858E-07 16913 20211116_3442_TMUAki_TMT10x_S_F4 96.379 87.447 2360400 3915400 31448 4615200 2542000 3663400 2452700 3325400 3440500 3045600 3201600 2197800 3656100 199630 4644600 2435200 3783100 2523100 3389700 3448400 2986000 3095800 4 4 2 4 4 4 4 4 4 4 4 886370 1480200 6859.3 1793900 1341600 2351000 1397200 1221500 1285700 1175900 1341600 825300 1382400 79834 1816200 1287700 2335300 1410900 1297500 1314800 1150300 1292500 2 2 1 2 2 2 2 2 2 2 2 1474100 2435200 24589 2821300 1200400 1312400 1055500 2103900 2154800 1869700 1859900 1372500 2273700 119790 2828400 1147500 1447800 1112200 2092100 2133600 1835700 1803300 2 2 1 2 2 2 2 2 2 2 2 1029500000 602240000 427270000 19317 1057 17742 98500;98501;98502 119255;119256;119257;119258;119259 119257 5 TPQGAVPAYLLDR Unmodified 1399.746 0.74596415 434 O95478 NSA2 Ribosome biogenesis protein NSA2 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 1 3 55.947 56.019 2 1.389E-12 15920 20211116_3434_TMUAki_TMT10x_P_F6 139.46 89.423 2197900 4269300 47242 4250000 2306200 1941500 1834200 2794200 3050200 2538300 3217700 2046800 3983700 227760 4302500 2202300 2139400 1922800 2790300 3055800 2489600 3098800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2197900 4269300 47242 4250000 2306200 1941500 1834200 2794200 3050200 2538300 3217700 2046800 3983700 227760 4302500 2202300 2139400 1922800 2790300 3055800 2489600 3098800 1 1 1 1 1 1 1 1 1 1 1 427690000 0 427690000 19318 434 17743 98503;98504;98505;98506 119260;119261;119262;119263 119260 4 TPQRGDEEGLGGEEEEEEEEEEEDDSAEEGGAAR Unmodified 3692.4477 0.44774821 3240 Q9Y2K7;Q9Y2K7-5;Q9Y2K7-4;Q9Y2K7-2 KDM2A Lysine-specific demethylase 2A yes no 0 0 0 1 By MS/MS By MS/MS 1 0 4 2 2 39.025 38.969 3;4 3.1802E-74 11569 20211116_3439_TMUAki_TMT10x_S_F1 235.35 228.7 186560 346150 1695.5 538240 404840 406600 187600 306680 392790 219730 309460 173690 323720 16913 533550 382610 420090 208000 314250 387660 218180 301110 3 3 1 3 3 3 3 3 3 3 3 109960 204230 0 319340 372420 381680 161560 179970 241290 133330 168470 102360 191000 9601.9 318580 351590 380450 177370 191770 239400 132140 164770 2 2 0 2 2 2 2 2 2 2 2 76593 141920 1695.5 218890 32412 24924 26039 126700 151510 86401 140990 71328 132720 7311.5 214970 31020 39642 30629 122480 148270 86044 136330 1 1 1 1 1 1 1 1 1 1 1 219200000 130000000 89203000 19319 3240 17744 98507;98508;98509;98510 119264;119265;119266 119266 3 TPSALAILENANVLAR Unmodified 1651.9257 0.92571943 590 P09972 ALDOC Fructose-bisphosphate aldolase C yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 3 1 2 78.394 78.372 2;3 9.7263E-21 25635 20211116_3428_TMUAki_TMT10x_P_F1 161.21 126.32 7346200 12396000 0 11162000 8596500 10359000 8971300 7200100 7038000 7182800 9325200 6839500 11563000 569990 11462000 8248500 10531000 9020600 7479500 7325700 7015800 8924800 2 2 0 2 2 2 2 2 2 2 2 3921400 6397900 0 5747800 3901700 6576800 4602200 3946700 3795100 4065400 4900600 3650700 5967500 270640 5922000 3755200 6589700 4606600 4149100 3935400 3965600 4693200 1 1 0 1 1 1 1 1 1 1 1 3424800 5998400 0 5413800 4694800 3782100 4369100 3253400 3242900 3117300 4424600 3188800 5595000 299360 5539900 4493300 3941700 4413900 3330500 3390300 3050100 4231600 1 1 0 1 1 1 1 1 1 1 1 1144900000 708610000 436310000 19320 590 17745 98511;98512;98513 119267;119268;119269 119267 3 TPSGEFLER Unmodified 1034.5033 0.50327426 3196 Q9UNN5;Q9UNN5-2 FAF1 FAS-associated factor 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 38.315 38.472 2 0.0025935 10186 20211116_3442_TMUAki_TMT10x_S_F4 83.168 53.791 523790 837600 3169.9 1074100 477260 453930 564570 504900 555910 534260 723040 487730 782450 45729 1069800 460010 501830 567840 511650 571860 520580 692310 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 523790 837600 3169.9 1074100 477260 453930 564570 504900 555910 534260 723040 487730 782450 45729 1069800 460010 501830 567840 511650 571860 520580 692310 1 1 1 1 1 1 1 1 1 1 1 10800000 0 10800000 19321 3196 17746 98514;98515 119270;119271 119271 2 TPSLTVFLLGQSAR Unmodified 1488.83 0.83002813 796 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 0 0 0 0 By MS/MS 5 0 1 1 77.133 77.144 2 0.021432 24645 20211116_3444_TMUAki_TMT10x_S_F5 61.235 33.026 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19322 796 17747 98516 119272 119272 1 TPSNELYKPLR Unmodified 1316.7089 0.70885036 2301 Q8WUM4;Q8WUM4-2 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 38.976 39.321 3 2.3143E-05 9737 20211116_3436_TMUAki_TMT10x_P_F8 101.89 83.815 3395100 5634700 61655 6163900 8980400 7294600 4797300 4370600 4654700 3657600 5209500 3161600 5259800 417160 6267700 8509400 7295800 5080400 4569900 4761300 3601500 5008300 4 4 4 4 4 4 4 4 4 4 4 2656000 4458800 42605 4819500 8314100 6712100 4109700 3522200 3676300 2910800 4125500 2473300 4161900 339150 4919500 7868900 6649400 4375100 3723800 3774900 2868000 3965800 3 3 3 3 3 3 3 3 3 3 3 739060 1175900 19051 1344400 666230 582530 687580 848390 978430 746770 1084000 688280 1097900 78007 1348200 640500 646410 705330 846120 986400 733530 1042400 1 1 1 1 1 1 1 1 1 1 1 286090000 235150000 50935000 19323 2301 17748 98517;98518;98519 119273;119274;119275;119276 119275 4 TPSNELYKPLRAEGTNFR Unmodified 2092.0702 0.070151836 2301 Q8WUM4;Q8WUM4-2 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 2 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 42.923 43.097 4 3.57E-50 11324 20211116_3436_TMUAki_TMT10x_P_F8 227.09 202.04 9188100 15399000 144570 16802000 16673000 19230000 10613000 17837000 18217000 14402000 14050000 8555900 14374000 971430 17078000 15841000 19409000 11318000 18103000 18052000 14207000 13682000 6 6 4 6 6 6 6 6 6 6 6 5798500 9204100 84851 10234000 12966000 16313000 8371000 10868000 11553000 8854500 8451300 5399400 8592200 641430 10459000 12321000 16121000 8829800 11264000 11503000 8730700 8248600 3 3 2 3 3 3 3 3 3 3 3 3389600 6194700 59720 6567400 3706100 2917100 2242400 6968900 6664100 5547600 5598300 3156400 5781700 329990 6618900 3519700 3288000 2488000 6838500 6548200 5476600 5433400 3 3 2 3 3 3 3 3 3 3 3 1530300000 925950000 604350000 19324 2301 17749 98520;98521;98522;98523;98524;98525 119277;119278;119279;119280;119281;119282 119279 6 TPSSDVLVFDYTK Unmodified 1470.7242 0.72422566 1854;1553 Q16576;Q16576-2;Q09028;Q09028-3;Q09028-2;Q09028-4 RBBP7;RBBP4 Histone-binding protein RBBP7;Histone-binding protein RBBP4 no no 0 0 0 0 By MS/MS By MS/MS 4.9 1.58 2 2 4 4 4 4 9 11 64.633 64.65 2;3 7.1121E-19 20370 20211116_3444_TMUAki_TMT10x_S_F5 186.02 153.66 341800000 550310000 2620400 567620000 364830000 401900000 355400000 287250000 286830000 293170000 394360000 318250000 513560000 28148000 575360000 349540000 417080000 358870000 298020000 298610000 286080000 377090000 33 33 15 33 33 33 33 33 33 33 33 129720000 200400000 1100100 214400000 134870000 211930000 136400000 109260000 107980000 107820000 141560000 120780000 187050000 11232000 217700000 129380000 213740000 137400000 116230000 112280000 105360000 135520000 12 12 6 12 12 12 12 12 12 12 12 212080000 349910000 1520300 353220000 229960000 189980000 218990000 177990000 178850000 185350000 252800000 197460000 326510000 16916000 357670000 220160000 203340000 221470000 181790000 186330000 180720000 241570000 21 21 9 21 21 21 21 21 21 21 21 42055000000 19359000000 22696000000 19325 1854;1553 17750 98526;98527;98528;98529;98530;98531;98532;98533;98534;98535;98536;98537;98538;98539;98540;98541;98542;98543;98544;98545 119283;119284;119285;119286;119287;119288;119289;119290;119291;119292;119293;119294;119295;119296;119297;119298;119299;119300;119301;119302;119303;119304;119305;119306;119307;119308;119309;119310;119311;119312;119313;119314;119315;119316 119307 34 TPSTMENDSSNLDPSQAPSLAQPLVFSNSK Oxidation (M) 3177.4772 0.47720203 1685 Q14157;Q14157-1;Q14157-4;Q14157-3;Q14157-5 UBAP2L Ubiquitin-associated protein 2-like yes no 0 0 1 0 By MS/MS 6 0 1 1 69.629 69.584 4 0.0023438 21499 20211116_3434_TMUAki_TMT10x_P_F6 46.101 39.597 4495200 8796500 59082 6221600 5063800 11310000 6348600 6258700 5965900 6486700 6451800 4185700 8198500 413950 6605000 4889900 11094000 6360700 6625100 6103300 6325800 6208800 2 2 1 2 2 2 2 2 2 2 2 4495200 8796500 59082 6221600 5063800 11310000 6348600 6258700 5965900 6486700 6451800 4185700 8198500 413950 6605000 4889900 11094000 6360700 6625100 6103300 6325800 6208800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1244300000 1244300000 0 19326 1685 17751 98546 119317;119318 119318 2259 2 TPSTMENDSSNLDPSQAPSLAQPLVFSNSK Unmodified 3161.4823 0.48228741 1685 Q14157;Q14157-1;Q14157-4;Q14157-3;Q14157-5 UBAP2L Ubiquitin-associated protein 2-like yes no 0 0 0 0 By MS/MS By matching 6 0 2 1 1 73.232 73.162 4 0.0019244 23009 20211116_3434_TMUAki_TMT10x_P_F6 50.865 44.289 1946000 3800200 84112 3394900 2349200 3779000 2853900 2026400 2144200 2245400 2401800 1812600 3544500 245380 3497800 2270300 3786800 2846500 2155300 2221600 2184000 2309000 1 1 1 1 1 1 1 1 1 1 1 1946000 3800200 84112 3394900 2349200 3779000 2853900 2026400 2144200 2245400 2401800 1812600 3544500 245380 3497800 2270300 3786800 2846500 2155300 2221600 2184000 2309000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1254100000 407620000 846470000 19327 1685 17751 98547;98548 119319 119319 1 TPTAPAVNLAGAR Unmodified 1237.6779 0.67788459 3216 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 7.4 0.49 3 2 1 4 39.457 39.893 2 2.7824E-18 10407 20211116_3436_TMUAki_TMT10x_P_F8 157.25 105.52 384700 654990 0 778090 314530 244080 275190 439530 480260 355060 568140 358190 611640 29964 777100 300530 285980 287550 434500 482720 350250 545350 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 384700 654990 0 778090 314530 244080 275190 439530 480260 355060 568140 358190 611640 29964 777100 300530 285980 287550 434500 482720 350250 545350 2 2 0 2 2 2 2 2 2 2 2 68412000 0 68412000 19328 3216 17752 98549;98550;98551;98552;98553 119320;119321;119322;119323;119324 119320 5 TPTLASTPIPPTPQAPSPAVDAEIR Unmodified 2526.333 0.33296804 1080 P48681 NES Nestin yes yes 0 0 0 0 By MS/MS 6 0 1 1 64.337 64.344 3 0.0023738 19338 20211116_3434_TMUAki_TMT10x_P_F6 57.147 37.327 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19329 1080 17753 98554 119325 119325 1 TPTLYLDFK Unmodified 1096.5805 0.58046195 105 O00625 PIR Pirin yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 68.443 68.295 2 3.3007E-05 21633 20211116_3436_TMUAki_TMT10x_P_F8 120.12 88.747 3101000 5889200 93160 5120500 4695700 3660000 4505600 3609000 3269600 3639400 4577200 2888000 5492400 366250 5256200 4503300 3817500 4541900 3672900 3426700 3553200 4375000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3101000 5889200 93160 5120500 4695700 3660000 4505600 3609000 3269600 3639400 4577200 2888000 5492400 366250 5256200 4503300 3817500 4541900 3672900 3426700 3553200 4375000 1 1 1 1 1 1 1 1 1 1 1 279940000 0 279940000 19330 105 17754 98555;98556;98557 119326;119327;119328 119327 3 TPTQTNGSNVPFKPR Unmodified 1642.8427 0.84271808 1428 P78347;P78347-2;P78347-4;P78347-3 GTF2I General transcription factor II-I yes no 0 0 0 1 By MS/MS 2 0 1 1 36.595 36.364 3 3.5897E-24 10031 20211116_3429_TMUAki_TMT10x_P_F2 193.47 172.38 1097000 1743600 0 2060100 3740200 2875100 1603700 1655700 2238500 1204900 1756100 1021300 1628100 111760 2091500 3531500 2851200 1758100 1731500 2232400 1195300 1709000 2 2 0 2 2 2 2 2 2 2 2 1097000 1743600 0 2060100 3740200 2875100 1603700 1655700 2238500 1204900 1756100 1021300 1628100 111760 2091500 3531500 2851200 1758100 1731500 2232400 1195300 1709000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 113160000 113160000 0 19331 1428 17755 98558 119329;119330 119329 2 TPTSSPASSPLVAK Unmodified 1341.714 0.71399532 1724 Q14684;Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 0 0 By MS/MS 7 0 1 1 40.864 41.467 3 0.0012887 12348 20211116_3446_TMUAki_TMT10x_S_F7 67.019 43.793 422740 704680 0 716700 451390 398740 481730 431340 473380 430340 573890 393600 657590 33290 725550 433440 426560 486800 436880 485520 420330 550500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 422740 704680 0 716700 451390 398740 481730 431340 473380 430340 573890 393600 657590 33290 725550 433440 426560 486800 436880 485520 420330 550500 1 1 0 1 1 1 1 1 1 1 1 76178000 0 76178000 19332 1724 17756 98559 119331 119331 1 TPTYREPVSDYQVLR Unmodified 1822.9214 0.92136233 2094 Q7Z7C8;Q7Z7C8-2;Q7Z7C8-4 TAF8 Transcription initiation factor TFIID subunit 8 yes no 0 0 0 1 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 42.795 42.848 3 0.010168 10863 20211116_3445_TMUAki_TMT10x_S_F6 58.98 38.317 1892700 3175500 0 3301600 5034700 6454400 3108700 4232000 4362600 3266100 2953700 1762000 2963600 160180 3406500 4776400 6330900 3292800 4386100 4333300 3229600 2893000 1 1 0 1 1 1 1 1 1 1 1 1892700 3175500 0 3301600 5034700 6454400 3108700 4232000 4362600 3266100 2953700 1762000 2963600 160180 3406500 4776400 6330900 3292800 4386100 4333300 3229600 2893000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 114880000 114880000 0 19333 2094 17757 98560;98561;98562 119332;119333;119334 119334 3 TPVDVILASVG Unmodified 1069.6019 0.60192568 3077 Q9UBF2 COPG2 Coatomer subunit gamma-2 yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 1.12 2 2 2 2 4 4 81.754 81.762 2 0.00059386 28535 20211116_3435_TMUAki_TMT10x_P_F7 86.833 53.095 3767300 6055800 101870 6132300 4578700 6241400 5025000 4522100 4422800 5125300 5553300 3508400 5651000 406650 6252200 4406800 6313000 5055100 4702600 4565900 4980800 5322100 7 7 6 7 7 7 7 7 7 7 7 1785300 2719100 35779 2942200 1922400 3681000 2348000 2225500 2038600 2456300 2631700 1662400 2538000 171300 2996800 1855400 3671700 2349800 2343100 2108500 2389400 2520400 3 3 2 3 3 3 3 3 3 3 3 1982000 3336800 66088 3190100 2656300 2560500 2677100 2296600 2384300 2669000 2921600 1845900 3113000 235360 3255400 2551500 2641300 2705300 2359500 2457500 2591300 2801800 4 4 4 4 4 4 4 4 4 4 4 1393000000 638340000 754700000 19334 3077 17758 98563;98564;98565;98566;98567;98568;98569;98570 119335;119336;119337;119338;119339;119340 119336 6 TPVEEVPAAIAPFQGR Unmodified 1680.8835 0.88352026 1798 Q15393;Q15393-3 SF3B3 Splicing factor 3B subunit 3 yes no 0 0 0 0 By MS/MS By MS/MS 4.8 0.748 4 4 2 5 5 63.301 63.345 2;3 4.6749E-45 19323 20211116_3445_TMUAki_TMT10x_S_F6 208.74 167.3 46101000 80318000 1345800 79514000 55529000 74793000 51251000 62960000 62525000 63077000 63749000 42933000 74942000 5075400 81104000 53209000 76220000 52559000 64614000 63158000 61599000 61458000 12 12 7 12 12 12 12 12 12 12 12 20509000 34795000 673560 35261000 27210000 46186000 24471000 28383000 28946000 27908000 28529000 19100000 32469000 2324300 36102000 26055000 45977000 25104000 29742000 29237000 27276000 27533000 5 5 3 5 5 5 5 5 5 5 5 25592000 45523000 672280 44253000 28320000 28608000 26780000 34578000 33579000 35169000 35220000 23833000 42473000 2751200 45001000 27154000 30243000 27455000 34872000 33921000 34323000 33925000 7 7 4 7 7 7 7 7 7 7 7 8855700000 4864100000 3991600000 19335 1798 17759 98571;98572;98573;98574;98575;98576;98577;98578;98579;98580 119341;119342;119343;119344;119345;119346;119347;119348;119349;119350;119351;119352;119353;119354 119354 14 TPVEPEVAIHR Unmodified 1246.667 0.66698555 1278 P60866;P60866-2 RPS20 40S ribosomal protein S20 yes no 0 0 0 0 By MS/MS By MS/MS 3 1.29 1 1 2 1 1 3 3 34.623 34.571 3 1.7214E-11 8259 20211116_3431_TMUAki_TMT10x_P_F4 169.65 142.33 9874100 15313000 188140 16638000 10547000 12098000 8933600 6742300 6438100 6224800 10565000 9195000 14294000 982220 16812000 10082000 12484000 9068800 7109900 6805300 6100800 10064000 4 4 3 4 4 4 4 4 4 4 4 7185000 10475000 180730 11491000 7875700 9694900 6079600 4588500 4358600 4213900 7190600 6691300 9778200 773800 11624000 7517400 9872600 6207400 4911800 4609900 4130900 6848900 2 2 2 2 2 2 2 2 2 2 2 2689100 4838000 7410.9 5147300 2671000 2402600 2854000 2153800 2079500 2011000 3374700 2503700 4515500 208420 5188200 2564700 2611300 2861400 2198100 2195400 1969900 3215300 2 2 1 2 2 2 2 2 2 2 2 1083800000 688650000 395170000 19336 1278 17760 98581;98582;98583;98584;98585;98586 119355;119356;119357;119358;119359 119356 5 TPVIDADKPVSSQLR Unmodified 1624.8784 0.87843489 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 43.6 43.71 3 8.2852E-20 10905 20211116_3434_TMUAki_TMT10x_P_F6 175.61 155.87 4880600 8339200 32668 9792300 11186000 10603000 6181800 8686200 8813500 7020900 8648000 4544500 7786800 520310 9899300 10602000 10709000 6613600 8878400 8845200 6925600 8347500 4 4 3 4 4 4 4 4 4 4 4 2786000 4548700 22088 5285100 9239900 8771900 4351900 4872300 4999800 4026400 4926100 2594200 4247200 341960 5391800 8738100 8633500 4690000 5125300 5055500 3967300 4754300 2 2 2 2 2 2 2 2 2 2 2 2094600 3790500 10580 4507300 1946400 1831200 1829900 3813900 3813700 2994500 3721900 1950300 3539600 178360 4507500 1863800 2075100 1923700 3753200 3789700 2958400 3593200 2 2 1 2 2 2 2 2 2 2 2 684700000 464780000 219920000 19337 1695 17761 98587;98588 119360;119361;119362;119363 119360 4 TPVPSDIDISR Unmodified 1198.6194 0.61936665 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 45.645 45.808 2 5.9781E-11 12710 20211116_3431_TMUAki_TMT10x_P_F4 166.66 124.55 9408800 13661000 81588 16443000 21126000 16079000 10693000 11711000 13366000 10542000 13386000 8760800 12758000 983210 16572000 19997000 16305000 11474000 12092000 13481000 10344000 12913000 2 2 1 2 2 2 2 2 2 2 2 5542600 8216400 81588 9110300 18156000 13626000 7952600 7077200 8195500 6398800 7780400 5161300 7670100 712220 9298400 17158000 13456000 8607700 7505800 8312200 6277300 7518300 1 1 1 1 1 1 1 1 1 1 1 3866200 5445100 0 7332400 2970000 2453300 2740100 4633300 5170600 4143000 5605900 3599500 5087900 270990 7274000 2839600 2849200 2866700 4586200 5169300 4066500 5394300 1 1 0 1 1 1 1 1 1 1 1 1251700000 624970000 626730000 19338 629 17762 98589;98590 119364;119365 119364 2 TPVRGEEPVFMVTGR Oxidation (M) 1689.8508 0.85083993 7 A1L020 MEX3A RNA-binding protein MEX3A yes yes 0 0 1 1 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 39.478 39.533 3 4.6373E-05 10565 20211116_3433_TMUAki_TMT10x_P_F5 95.582 83.662 3646400 5855100 47834 6732800 8113800 8230000 5030700 7061800 7325300 5899100 5888400 3395300 5466700 377800 6828900 7703200 8265500 5335100 7204100 7300800 5809300 5724800 4 4 2 4 4 4 4 4 4 4 4 2758800 4443700 47834 5116400 7242400 7462000 4335000 5327900 5458100 4558800 4487700 2568900 4149000 309080 5207100 6872400 7409100 4584000 5501800 5469100 4484100 4359200 3 3 2 3 3 3 3 3 3 3 3 887590 1411400 0 1616400 871430 768020 695710 1733800 1867200 1340300 1400700 826400 1317800 68715 1621800 830840 856440 751140 1702300 1831700 1325200 1365600 1 1 0 1 1 1 1 1 1 1 1 442100000 350730000 91360000 19339 7 17763 98591;98592;98593 119366;119367;119368;119369 119366 7 4 TPVSEDMLGR Unmodified 1103.5281 0.52810881 753 P21281;P15313 ATP6V1B2;ATP6V1B1 V-type proton ATPase subunit B, brain isoform;V-type proton ATPase subunit B, kidney isoform yes no 0 0 0 0 By MS/MS 3 0 1 1 41.762 41.816 2 4.2652E-05 12639 20211116_3430_TMUAki_TMT10x_P_F3 102.55 69.733 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19340 753 17764 98594 119370 119370 1 TPYGASIFQSK Unmodified 1197.603 0.60298831 1512 Q04726;Q04726-3;Q04726-2;Q04726-7;Q04726-6;Q04726-5;Q04726-4;Q04727;Q04724;Q04725;Q04725-2;Q04727-2;Q04727-4;Q04727-3 TLE3;TLE4;TLE1;TLE2 Transducin-like enhancer protein 3;Transducin-like enhancer protein 4;Transducin-like enhancer protein 1;Transducin-like enhancer protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 3 1 2 55.408 55.108 2;3 5.9523E-05 18214 20211116_3439_TMUAki_TMT10x_S_F1 100.82 73.721 1247900 2051200 32803 2381700 1101500 1144200 1113800 1726300 1754800 1481200 1641800 1162200 1915200 131980 2387900 1058500 1255000 1149000 1718500 1753100 1456700 1587300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1247900 2051200 32803 2381700 1101500 1144200 1113800 1726300 1754800 1481200 1641800 1162200 1915200 131980 2387900 1058500 1255000 1149000 1718500 1753100 1456700 1587300 1 1 1 1 1 1 1 1 1 1 1 91680000 0 91680000 19341 1512 17765 98595;98596;98597 119371;119372;119373 119373 3 TPYLGDVAVVVHPGKK Unmodified 1678.9406 0.94064121 2617 Q9BPU6 DPYSL5 Dihydropyrimidinase-related protein 5 yes yes 0 0 0 1 By MS/MS By MS/MS 4.14 3.09 2 2 1 2 4 3 51.789 51.785 4 5.3298E-15 14890 20211116_3436_TMUAki_TMT10x_P_F8 142.97 122.51 44449000 77796000 504500 78769000 64902000 71500000 46739000 47124000 55110000 49158000 55853000 41387000 72595000 3905800 80180000 61785000 72740000 48618000 49204000 55725000 47927000 53857000 11 11 6 11 11 11 11 11 11 11 11 28050000 49419000 361540 49341000 50560000 56518000 33864000 29633000 35063000 31769000 34213000 26118000 46113000 2698700 50449000 48064000 56530000 35260000 31550000 35588000 30939000 33030000 6 6 3 6 6 6 6 6 6 6 6 16399000 28377000 142970 29428000 14341000 14982000 12875000 17491000 20047000 17389000 21640000 15270000 26483000 1207100 29732000 13721000 16210000 13358000 17654000 20137000 16987000 20826000 5 5 3 5 5 5 5 5 5 5 5 5319900000 3658900000 1660900000 19342 2617 17766 98598;98599;98600;98601;98602;98603;98604 119374;119375;119376;119377;119378;119379;119380;119381;119382;119383;119384 119379 11 TPYTDVNIVTIR Unmodified 1390.7456 0.7456298 1132 P50213;P50213-2 IDH3A Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 57.131 57.201 2 2.0718E-07 16792 20211116_3445_TMUAki_TMT10x_S_F6 108.53 89.422 2442900 3973100 0 3927800 3135700 4307200 2980100 2736700 2800600 2606500 2645100 2273900 3707200 131690 4015900 2997500 4329200 3025400 2857900 2851400 2551000 2556400 1 1 0 1 1 1 1 1 1 1 1 2442900 3973100 0 3927800 3135700 4307200 2980100 2736700 2800600 2606500 2645100 2273900 3707200 131690 4015900 2997500 4329200 3025400 2857900 2851400 2551000 2556400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 570690000 570690000 0 19343 1132 17767 98605;98606 119385;119386 119386 2 TPYTIMFGPDK Unmodified 1268.6111 0.61111015 834 P27824;P27824-2;P27824-3 CANX Calnexin yes no 0 0 0 0 By MS/MS By MS/MS 6.25 3.03 1 3 2 2 67.176 67.162 2;3 3.6661E-07 21094 20211116_3436_TMUAki_TMT10x_P_F8 113.47 88.087 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19344 834 17768 98607;98608;98609;98610 119387;119388;119389;119390 119388 4 TPYTIMFGPDK Oxidation (M) 1284.606 0.60602477 834 P27824;P27824-2;P27824-3 CANX Calnexin yes no 0 0 1 0 By MS/MS 7 0 1 1 57.638 58.161 3 0.0021267 19162 20211116_3446_TMUAki_TMT10x_S_F7 71.555 51.449 4197400 7363600 65357 8751000 3634500 3512400 4002400 4309700 3988900 4169900 5691300 3908700 6876200 401020 8751100 3498100 3919300 4040200 4337400 4119000 4078300 5437500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4197400 7363600 65357 8751000 3634500 3512400 4002400 4309700 3988900 4169900 5691300 3908700 6876200 401020 8751100 3498100 3919300 4040200 4337400 4119000 4078300 5437500 1 1 1 1 1 1 1 1 1 1 1 574140000 0 574140000 19345 834 17768 98611 119391 119391 1006 1 TQADLDSLVR Unmodified 1116.5775 0.57750184 2084 Q7Z4W1 DCXR L-xylulose reductase yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 48.194 48.005 2 0.0020201 15189 20211116_3430_TMUAki_TMT10x_P_F3 82.494 52.353 3370100 5583700 215550 6460100 5821600 5364900 4606300 4718100 4849800 4205800 5257300 3139500 5213500 514630 6512100 5564500 5518400 4743500 4814300 4937600 4128700 5058900 2 2 2 2 2 2 2 2 2 2 2 1594800 2563800 126360 3148200 3964500 3831800 2508900 2238800 2401000 2042800 2405500 1485800 2394500 283170 3180600 3772400 3825600 2617700 2350700 2447500 2003100 2320400 1 1 1 1 1 1 1 1 1 1 1 1775300 3019900 89198 3311900 1857100 1533200 2097400 2479300 2448700 2163000 2851800 1653700 2819000 231460 3331500 1792100 1692900 2125800 2463600 2490100 2125600 2738500 1 1 1 1 1 1 1 1 1 1 1 147220000 89214000 58002000 19346 2084 17769 98612;98613 119392;119393 119392 2 TQAFQVLLQPLACVLK Unmodified 1828.0281 0.028076012 2010 Q6PJG6 BRAT1 BRCA1-associated ATM activator 1 yes yes 0 0 0 0 By MS/MS 7 0 1 1 81.334 81.354 3 0.00034546 28403 20211116_3435_TMUAki_TMT10x_P_F7 73.208 52.827 1241500 1891200 4061.1 1714700 963870 1836100 1162300 854660 908000 952430 1260800 1156000 1764000 102830 1763600 929440 1840900 1160700 921420 947380 926160 1205300 1 1 1 1 1 1 1 1 1 1 1 1241500 1891200 4061.1 1714700 963870 1836100 1162300 854660 908000 952430 1260800 1156000 1764000 102830 1763600 929440 1840900 1160700 921420 947380 926160 1205300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 181920000 181920000 0 19347 2010 17770 98614 119394 119394 1 TQAIVCQQLDLTHLK Unmodified 1766.9349 0.93490391 1303 P61221 ABCE1 ATP-binding cassette sub-family E member 1 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 58.834 59.188 3 6.8947E-15 17820 20211116_3436_TMUAki_TMT10x_P_F8 156.67 134.8 36953000 57532000 244640 63975000 48561000 58564000 40720000 44242000 43395000 41662000 48325000 34407000 53708000 3197100 64729000 46364000 59673000 41797000 45628000 44204000 40796000 46465000 7 7 4 7 7 7 7 7 7 7 7 21266000 31812000 90369 35716000 33122000 43908000 27666000 24888000 24265000 23692000 28375000 19801000 29699000 1966300 36283000 31624000 43798000 28243000 26229000 24980000 23188000 27245000 4 4 2 4 4 4 4 4 4 4 4 15687000 25720000 154270 28259000 15440000 14656000 13054000 19354000 19130000 17970000 19950000 14606000 24009000 1230700 28446000 14740000 15875000 13554000 19399000 19224000 17608000 19220000 3 3 2 3 3 3 3 3 3 3 3 6588500000 3535100000 3053400000 19348 1303 17771 98615;98616;98617;98618 119395;119396;119397;119398;119399;119400;119401 119397 7 TQARPVGVK Unmodified 954.56106 0.56106391 431 O95433;O95433-2 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 27.926 27.808 3 0.031092 6099 20211116_3439_TMUAki_TMT10x_S_F1 60.167 48.531 68845 123970 0 82560 83109 118940 75354 60741 62283 61572 89723 64088 115520 4205.2 87694 79383 117620 76435 64720 64908 60100 85703 1 1 0 1 1 1 1 1 1 1 1 68845 123970 0 82560 83109 118940 75354 60741 62283 61572 89723 64088 115520 4205.2 87694 79383 117620 76435 64720 64908 60100 85703 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14489000 14489000 0 19349 431 17772 98619;98620;98621 119402;119403 119403 2 TQAVFNHTEDYVLLPDER Unmodified 2146.0331 0.033097627 1516 Q05048 CSTF1 Cleavage stimulation factor subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 2 4 58.531 58.378 3 2.5811E-12 20531 20211116_3441_TMUAki_TMT10x_S_F3 132.9 116.15 12139000 22366000 173180 21203000 18012000 27557000 15387000 21421000 21954000 19744000 18087000 11304000 20865000 1236300 21807000 17214000 27543000 15948000 22039000 21910000 19352000 17567000 6 6 4 6 6 6 6 6 6 6 6 8725300 16453000 156070 15591000 14446000 23389000 12199000 14969000 15229000 14203000 12705000 8125200 15349000 938150 16083000 13804000 23157000 12585000 15622000 15271000 13903000 12335000 4 4 3 4 4 4 4 4 4 4 4 3413800 5912800 17114 5611500 3565800 4167300 3188700 6451400 6725400 5541200 5381000 3178700 5516200 298150 5724400 3410400 4385800 3363600 6416800 6639500 5449300 5232500 2 2 1 2 2 2 2 2 2 2 2 3721000000 1918700000 1802300000 19350 1516 17773 98622;98623;98624;98625;98626;98627 119404;119405;119406;119407;119408;119409;119410 119408 7 TQDECILHFLR Unmodified 1430.6976 0.69763375 2379;2263 Q8TAQ2;Q8TAQ2-2;Q8TAQ2-3;Q92922 SMARCC2;SMARCC1 SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1 no no 0 0 0 0 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 56.252 56.358 3 1.3912E-08 17471 20211116_3442_TMUAki_TMT10x_S_F4 150.44 131.12 16655000 25894000 115760 29144000 26874000 28895000 19653000 19190000 17696000 18448000 22103000 15507000 24174000 1410300 29498000 25580000 29233000 20252000 19978000 18244000 18047000 21186000 7 7 3 7 7 7 7 7 7 7 7 11279000 16730000 115760 19626000 20246000 24667000 13994000 12973000 12041000 12246000 14354000 10502000 15622000 1071600 19893000 19257000 24556000 14461000 13759000 12417000 11990000 13775000 5 5 3 5 5 5 5 5 5 5 5 5376100 9164200 0 9517500 6628300 4227200 5658900 6216500 5655000 6201700 7749500 5004600 8552500 338710 9605300 6323000 4677400 5790600 6219700 5827500 6057500 7410800 2 2 0 2 2 2 2 2 2 2 2 3691700000 1995900000 1695800000 19351 2263;2379 17774 98628;98629;98630;98631;98632 119411;119412;119413;119414;119415;119416;119417 119416 7 TQDPAKAPNTPDILEIEFKK Unmodified 2254.1845 0.18451289 476 P00966 ASS1 Argininosuccinate synthase yes yes 0 0 0 2 By MS/MS 5.5 0.5 1 1 2 61.709 61.748 4 0.010878 18351 20211116_3444_TMUAki_TMT10x_S_F5 52.541 43.941 10113000 17659000 192600 14508000 14836000 15160000 12291000 20631000 19954000 18310000 18294000 9418000 16466000 1084100 15032000 14173000 15526000 12837000 20630000 19906000 17978000 17699000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10113000 17659000 192600 14508000 14836000 15160000 12291000 20631000 19954000 18310000 18294000 9418000 16466000 1084100 15032000 14173000 15526000 12837000 20630000 19906000 17978000 17699000 3 3 3 3 3 3 3 3 3 3 3 924140000 0 924140000 19352 476 17775 98633;98634 119418;119419;119420 119418 3 TQEEGEERAESEQEAYLRED Unmodified 2397.0204 0.020420269 2917 Q9NR28;Q9NR28-2;Q9NR28-3 DIABLO Diablo homolog, mitochondrial yes no 0 0 0 2 By MS/MS By MS/MS 1 0 3 2 1 36.991 36.971 3;4 1.1293E-71 10673 20211116_3439_TMUAki_TMT10x_S_F1 293.12 249.66 2457200 3952000 34456 6100200 3917800 4164200 1631200 3395600 3968000 2658100 3696600 2288100 3695700 256290 6042500 3701200 4344400 1846500 3469100 3924900 2626500 3574400 4 4 4 4 4 4 4 4 4 4 4 1297300 1993100 20578 2971800 3612000 3658100 1312600 1770500 2168900 1366800 1925400 1208100 1863400 159150 2972800 3406800 3641900 1478200 1883300 2160400 1351500 1864900 3 3 3 3 3 3 3 3 3 3 3 1159800 1958900 13878 3128400 305840 506140 318610 1625100 1799100 1291300 1771200 1080000 1832300 97131 3069700 294410 702520 368340 1585800 1764500 1274900 1709500 1 1 1 1 1 1 1 1 1 1 1 2384400000 1527600000 856720000 19353 2917 17776 98635;98636;98637 119421;119422;119423;119424 119424 4 TQEELTPFFK Unmodified 1238.6183 0.61830402 47 CON__P81644 yes yes 0 0 0 0 By MS/MS By MS/MS 5.14 0.833 2 2 3 4 3 64.362 64.415 2;3 8.9092E-11 19408 20211116_3444_TMUAki_TMT10x_S_F5 201.84 153.56 + 23287000 50336000 249910 39888000 30807000 40110000 26761000 67335000 79294000 57514000 44433000 21684000 46930000 2186800 41434000 29448000 41460000 28983000 66793000 77132000 56576000 43942000 7 7 5 7 7 7 7 7 7 7 7 10327000 20886000 88784 16030000 16517000 27755000 12608000 28707000 34832000 24733000 18944000 9615800 19471000 1022100 16871000 15744000 27573000 13681000 29021000 33900000 24319000 18766000 3 3 2 3 3 3 3 3 3 3 3 12960000 29450000 161130 23858000 14291000 12355000 14153000 38627000 44461000 32781000 25489000 12068000 27459000 1164700 24562000 13704000 13887000 15302000 37773000 43232000 32257000 25176000 4 4 3 4 4 4 4 4 4 4 4 2835100000 1879200000 955890000 19354 47 17777 98638;98639;98640;98641;98642;98643;98644 119425;119426;119427;119428;119429;119430;119431;119432;119433 119429 9 TQEELTPFFKK Unmodified 1366.7133 0.71326704 47 CON__P81644 yes yes 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 55.627 56.152 3 0.00087045 18313 20211116_3446_TMUAki_TMT10x_S_F7 80.96 47.074 + 10750000 20824000 0 17999000 9220200 8830300 8688200 40224000 47813000 29775000 22707000 10009000 19420000 824120 18424000 8824400 10267000 10052000 38999000 46039000 29510000 22682000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10750000 20824000 0 17999000 9220200 8830300 8688200 40224000 47813000 29775000 22707000 10009000 19420000 824120 18424000 8824400 10267000 10052000 38999000 46039000 29510000 22682000 1 1 0 1 1 1 1 1 1 1 1 1495900000 0 1495900000 19355 47 17778 98645;98646 119434;119435 119435 2 TQETPSAQMEGFLNR Oxidation (M) 1723.7835 0.78354822 1475 Q01082 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 0 0 1 0 By MS/MS 3.5 0.5 1 1 2 39.24 39.42 3 8.4601E-10 12967 20211116_3441_TMUAki_TMT10x_S_F3 108.52 98.601 172220 267470 0 313010 156110 120130 146960 176730 212570 154210 266510 160340 249750 12727 313220 149370 135550 151580 176150 215300 151530 255420 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 172220 267470 0 313010 156110 120130 146960 176730 212570 154210 266510 160340 249750 12727 313220 149370 135550 151580 176150 215300 151530 255420 1 1 0 1 1 1 1 1 1 1 1 36597000 0 36597000 19356 1475 17779 98647;98648 119436;119437 119436 2001 2 TQFLPPNLLALFAPR Acetyl (Protein N-term) 1738.977 0.97702672 560 P08621;P08621-2;P08621-3 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 1 0 0 0 By MS/MS 6 0 1 1 85.664 85.683 2 5.1302E-14 28378 20211116_3445_TMUAki_TMT10x_S_F6 111.06 91.27 140140 245690 0 204440 176890 158970 186130 161580 184870 168140 186260 130470 229100 9322.2 210790 169660 164810 188280 164350 188180 163940 179630 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 140140 245690 0 204440 176890 158970 186130 161580 184870 168140 186260 130470 229100 9322.2 210790 169660 164810 188280 164350 188180 163940 179630 1 1 0 1 1 1 1 1 1 1 1 26353000 0 26353000 19357 560 17780 98649 119438 119438 1 TQGFLALFSGDTGEIK Unmodified 1682.8516 0.85155143 3221 Q9Y230;Q9Y230-2 RUVBL2 RuvB-like 2 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 79.116 79.125 3 0.00043815 27487 20211116_3435_TMUAki_TMT10x_P_F7 70.334 50.496 65801000 106430000 161680 104600000 67423000 72773000 82030000 28635000 23122000 36878000 66399000 61254000 99299000 3841000 106370000 64909000 75108000 80620000 31588000 27636000 35677000 62713000 3 3 1 3 3 3 3 3 3 3 3 35820000 57079000 161680 55415000 32267000 50757000 44028000 16775000 14229000 22195000 36174000 33348000 53254000 2505000 56580000 31208000 51232000 43122000 18933000 16558000 21453000 34216000 2 2 1 2 2 2 2 2 2 2 2 29981000 49347000 0 49190000 35156000 22016000 38003000 11860000 8893400 14683000 30226000 27906000 46045000 1336000 49786000 33701000 23876000 37498000 12656000 11078000 14224000 28497000 1 1 0 1 1 1 1 1 1 1 1 3114800000 1940500000 1174300000 19358 3221 17781 98650;98651;98652 119439;119440;119441 119439 3 TQGFLALFSGDTGEIKSEVR Unmodified 2154.0957 0.095697884 3221 Q9Y230;Q9Y230-2 RUVBL2 RuvB-like 2 yes no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 76.817 76.848 3 4.6126E-19 26927 20211116_3446_TMUAki_TMT10x_S_F7 158.99 130.9 40989000 70877000 506900 54705000 50532000 78323000 55367000 59538000 53533000 54588000 59663000 38167000 66075000 3748700 57304000 48588000 77911000 55851000 61334000 54758000 53517000 57365000 7 7 5 7 7 7 7 7 7 7 7 27486000 47590000 436540 35882000 28328000 61023000 36103000 41494000 35932000 37689000 40150000 25595000 44363000 2615400 37808000 27379000 60177000 36209000 43060000 36712000 36965000 38601000 4 4 3 4 4 4 4 4 4 4 4 13504000 23286000 70360 18823000 22205000 17299000 19264000 18044000 17601000 16899000 19513000 12572000 21712000 1133300 19495000 21210000 17734000 19642000 18274000 18047000 16552000 18764000 3 3 2 3 3 3 3 3 3 3 3 6613200000 3436900000 3176300000 19359 3221 17782 98653;98654;98655;98656 119442;119443;119444;119445;119446;119447;119448 119446 7 TQGNVFATDAILATLMSCTR Oxidation (M) 2185.0507 0.050738302 185 O15371;O15371-2;O15371-3 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 0 0 1 0 By MS/MS By matching 2 0 2 1 1 78.945 78.917 3 0.0056503 27301 20211116_3429_TMUAki_TMT10x_P_F2 51.044 40.257 3421500 6027100 363210 5652100 3024200 5997600 4610500 2778900 2390700 2766100 3888600 3188400 5622500 616600 5797700 2961600 6016300 4524900 2987400 2582400 2702000 3704800 1 1 1 1 1 1 1 1 1 1 1 3421500 6027100 363210 5652100 3024200 5997600 4610500 2778900 2390700 2766100 3888600 3188400 5622500 616600 5797700 2961600 6016300 4524900 2987400 2582400 2702000 3704800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1737900000 796440000 941490000 19360 185 17783 98657;98658 119449 119449 138 1 TQGNVFATDAILATLMSCTR Unmodified 2169.0558 0.05582368 185 O15371;O15371-2;O15371-3 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 0 0 0 0 By MS/MS By MS/MS 2.8 0.4 1 4 3 2 80.798 80.757 2;3 1.4318E-58 29543 20211116_3441_TMUAki_TMT10x_S_F3 248.25 217.36 6902100 10556000 36765 12077000 7436300 7258500 8948000 2714500 2651600 3603200 7299100 6426100 9855500 380580 12141000 7165000 7589500 8802400 3015800 3137900 3482500 6897300 5 5 1 5 5 5 5 5 5 5 5 2902200 4287500 0 4806200 2574400 3969300 3576600 1145300 1370500 1603600 2991900 2702200 4002600 82307 4854000 2493400 4031900 3507200 1320700 1548300 1547300 2836000 2 2 0 2 2 2 2 2 2 2 2 3999900 6268400 36765 7270500 4861900 3289100 5371500 1569100 1281100 1999600 4307200 3723900 5852900 298270 7286800 4671700 3557700 5295200 1695100 1589600 1935100 4061300 3 3 1 3 3 3 3 3 3 3 3 4000500000 2208100000 1792400000 19361 185 17783 98659;98660;98661;98662;98663 119450;119451;119452;119453;119454 119453 5 TQHEILR Unmodified 895.48756 0.48756462 1090 P49257 LMAN1 Protein ERGIC-53 yes yes 0 0 0 0 By MS/MS 3 0 1 1 26.678 26.385 3 0.017086 7677 20211116_3441_TMUAki_TMT10x_S_F3 71.342 17.375 158740 281850 0 253840 218980 169820 190680 174970 313600 226920 218660 147760 262890 9454.9 259680 208970 178300 198700 179190 310290 219480 213870 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 158740 281850 0 253840 218980 169820 190680 174970 313600 226920 218660 147760 262890 9454.9 259680 208970 178300 198700 179190 310290 219480 213870 1 1 0 1 1 1 1 1 1 1 1 2150600 0 2150600 19362 1090 17784 98664 119455 119455 1 TQHLQELFSR Unmodified 1257.6466 0.64658446 3120 Q9UHI6 DDX20 Probable ATP-dependent RNA helicase DDX20 yes yes 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 41.856 42.119 3 1.3677E-07 12430 20211116_3446_TMUAki_TMT10x_S_F7 113.38 86.967 1991700 3154100 36832 3108600 3877600 3564900 2540600 2717000 2472100 2352800 2895400 1854800 2942900 225870 3181300 3686600 3584500 2644900 2794400 2532900 2312900 2780000 2 2 2 2 2 2 2 2 2 2 2 1129500 1776100 29151 1786700 2978400 2817200 1650600 1821500 1645800 1531200 1806700 1051900 1657300 146700 1837400 2824200 2784000 1743600 1893500 1680200 1507400 1737900 1 1 1 1 1 1 1 1 1 1 1 862260 1378000 7680.9 1321900 899160 747730 890010 895570 826290 821630 1088800 802910 1285600 79163 1343900 862390 800470 901280 900880 852710 805500 1042200 1 1 1 1 1 1 1 1 1 1 1 171950000 152270000 19685000 19363 3120 17785 98665;98666;98667 119456;119457;119458 119457 3 TQIAICPNNHEVHIYEK Unmodified 2065.0051 0.005108738 167 O15143 ARPC1B Actin-related protein 2/3 complex subunit 1B yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 42.43 42.541 4 9.692E-12 10589 20211116_3444_TMUAki_TMT10x_S_F5 139.11 123.69 4861100 9038900 24497 9339400 10991000 11203000 6784100 9550200 9335700 7324700 8083800 4526200 8435400 490570 9534300 10433000 11261000 7180400 9726800 9341400 7245400 7836900 4 4 3 4 4 4 4 4 4 4 4 2853700 5524500 21139 5577300 8820000 9253400 4984300 5881400 5493500 4402800 4770300 2657300 5155200 339860 5741000 8361800 9124200 5272100 6105700 5540800 4360900 4624100 2 2 2 2 2 2 2 2 2 2 2 2007300 3514400 3358.5 3762100 2170900 1949900 1799800 3668800 3842200 2921900 3313500 1868900 3280200 150710 3793400 2071100 2136800 1908300 3621100 3800600 2884500 3212700 2 2 1 2 2 2 2 2 2 2 2 540640000 267160000 273480000 19364 167 17786 98668;98669;98670 119459;119460;119461;119462 119461 4 TQIAPGSQTVLGIGPGPADLIDK Unmodified 2247.2111 0.21106199 3283 Q9Y3E5 PTRH2 Peptidyl-tRNA hydrolase 2, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 76.94 77.035 3 4.0783E-11 26579 20211116_3435_TMUAki_TMT10x_P_F7 107.08 90.419 6254400 9777400 37757 8697800 6180300 10729000 7025500 6588700 6325500 6804800 7911100 5823300 9119300 491390 8979800 5945500 10712000 7060400 6914400 6522000 6637000 7582400 3 3 2 3 3 3 3 3 3 3 3 3817900 6104200 16888 5522100 3632900 8545100 4536300 4414800 4350100 4641300 5180800 3554400 5693700 268370 5719800 3503100 8425900 4548300 4703900 4463100 4523600 4972100 2 2 1 2 2 2 2 2 2 2 2 2436600 3673100 20869 3175700 2547400 2183900 2489200 2173900 1975500 2163500 2730200 2268900 3425600 223010 3260000 2442400 2285700 2512100 2210500 2058900 2113400 2610400 1 1 1 1 1 1 1 1 1 1 1 1606000000 713530000 892480000 19365 3283 17787 98671;98672 119463;119464;119465 119463 3 TQIDHYVGIAR Unmodified 1271.6622 0.66223452 411 O95197-3;O95197;O95197-4;O95197-7;O95197-2 RTN3 Reticulon-3 yes no 0 0 0 0 By MS/MS 6 0 1 1 38.506 38.512 3 0.051923 8864 20211116_3434_TMUAki_TMT10x_P_F6 47.062 28.447 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19366 411 17788 98673 119466 119466 1 TQILAASYELHK Unmodified 1372.7351 0.73506511 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 50.613 50.959 3 5.0498E-06 15683 20211116_3435_TMUAki_TMT10x_P_F7 105.99 68.88 7308500 11318000 201200 12452000 11625000 13756000 8927700 10388000 10893000 9205100 10415000 6805700 10565000 762480 12642000 11085000 13857000 9257600 10696000 10979000 9038900 10061000 3 3 2 3 3 3 3 3 3 3 3 5439200 7959300 153050 8774800 9851600 11948000 7098900 7611200 7822500 6624900 7448200 5064900 7429900 563970 8941600 9380300 11879000 7367000 7927900 7913100 6510800 7196600 2 2 1 2 2 2 2 2 2 2 2 1869300 3358600 48145 3677000 1773600 1807700 1828800 2776900 3070500 2580200 2966400 1740900 3135100 198510 3700700 1704900 1978700 1890600 2768500 3065700 2528100 2864800 1 1 1 1 1 1 1 1 1 1 1 517910000 248300000 269610000 19367 1475 17789 98674;98675;98676 119467;119468;119469 119467 3 TQISLVR Unmodified 815.4865 0.48650199 881 P30876 POLR2B DNA-directed RNA polymerase II subunit RPB2 yes yes 0 0 0 0 By MS/MS 8 0 1 1 36.136 36.691 2 0.081014 8027 20211116_3447_TMUAki_TMT10x_S_F8 61.679 0.997 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19368 881 17790 98677 119470 119470 1 TQLEELEDELQATEDAK Unmodified 1960.9113 0.91131074 934;935 P35579;P35579-2;P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH9;MYH10 Myosin-9;Myosin-10 no no 0 0 0 0 By MS/MS By MS/MS 1.54 0.499 6 7 8 5 49.217 49.141 2;3 1.6312E-69 25517 20211116_3428_TMUAki_TMT10x_P_F1 305.51 292.89 43844000 72160000 379350 73503000 42062000 55057000 52061000 30448000 33274000 39527000 50370000 40825000 67338000 3808000 74615000 40595000 56673000 51704000 32472000 35279000 38230000 48061000 14 14 8 14 14 14 14 14 14 14 14 21846000 35765000 210330 36767000 19483000 33720000 24736000 15395000 17429000 19353000 25415000 20342000 33376000 1907700 37392000 18822000 34128000 24590000 16695000 18334000 18738000 24270000 8 8 5 8 8 8 8 8 8 8 8 21999000 36396000 169030 36737000 22579000 21336000 27325000 15054000 15846000 20174000 24955000 20484000 33963000 1900200 37223000 21774000 22545000 27114000 15776000 16946000 19492000 23791000 6 6 3 6 6 6 6 6 6 6 6 9396800000 4861200000 4535600000 19369 934;935 17791 98678;98679;98680;98681;98682;98683;98684;98685;98686;98687;98688;98689;98690 119471;119472;119473;119474;119475;119476;119477;119478;119479;119480;119481;119482;119483;119484;119485 119471 15 TQLIAHDKEVYDIAFSR Unmodified 2005.0269 0.026890038 1325 P61962 DCAF7 DDB1- and CUL4-associated factor 7 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 55.905 56.533 4 1.885E-11 17941 20211116_3435_TMUAki_TMT10x_P_F7 138.3 126.38 9430600 18122000 226270 14714000 13827000 15243000 11910000 13303000 12760000 12637000 14175000 8782500 16897000 1054300 15260000 13224000 15452000 12207000 13603000 12994000 12369000 13630000 2 2 2 2 2 2 2 2 2 2 2 3656300 6543600 84566 5362900 5905100 9039700 5212900 4365600 4490200 4842700 4685500 3405000 6101500 413440 5609400 5649800 8877200 5301500 4688800 4606500 4709900 4513900 1 1 1 1 1 1 1 1 1 1 1 5774300 11578000 141710 9351500 7922100 6203500 6696700 8937000 8269700 7794300 9489000 5377500 10796000 640870 9650300 7573800 6575300 6905500 8914400 8387400 7659400 9115900 1 1 1 1 1 1 1 1 1 1 1 1692600000 637960000 1054700000 19370 1325 17792 98691;98692 119486;119487 119486 2 TQLYEYLQNR Unmodified 1326.6568 0.65681479 3254 Q9Y2X3 NOP58 Nucleolar protein 58 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 55.323 55.655 2 2.9741E-14 18089 20211116_3446_TMUAki_TMT10x_S_F7 231.16 186.78 17955000 30840000 161840 32187000 26979000 33898000 21085000 31304000 28071000 26651000 26916000 16718000 28782000 1632700 32766000 25722000 34370000 21912000 31820000 28211000 26220000 26000000 6 6 3 6 6 6 6 6 6 6 6 9325400 15693000 147790 16568000 18112000 25163000 13775000 16526000 14667000 13960000 14017000 8683300 14647000 940990 16969000 17260000 24910000 14227000 17162000 14859000 13740000 13542000 3 3 2 3 3 3 3 3 3 3 3 8629200 15147000 14047 15619000 8867400 8735900 7310000 14778000 13404000 12691000 12899000 8034400 14136000 691720 15797000 8461500 9459900 7685000 14658000 13351000 12481000 12459000 3 3 1 3 3 3 3 3 3 3 3 3281700000 1743000000 1538600000 19371 3254 17793 98693;98694;98695;98696 119488;119489;119490;119491;119492;119493 119491 6 TQMAEVLPSPR Oxidation (M) 1243.6231 0.62307182 625 P11388;P11388-2;P11388-3;P11388-4 TOP2A DNA topoisomerase 2-alpha yes no 0 0 1 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 35.231 35.293 2 0.00069 8016 20211116_3445_TMUAki_TMT10x_S_F6 90.05 60.577 746080 1202900 1051.9 1487400 1743600 1383400 903400 911460 1156600 816750 1167400 694660 1123500 74044 1495800 1650600 1405200 968130 947700 1166000 801580 1125800 5 5 2 5 5 5 5 5 5 5 5 534020 811010 1051.9 990380 1541300 1243300 735390 652250 858860 591780 791390 497230 757430 59361 1001500 1457700 1237700 791900 691180 865950 580450 765520 2 2 2 2 2 2 2 2 2 2 2 212060 391880 0 497060 202320 140130 168010 259210 297750 224970 376020 197430 366060 14683 494310 192950 167440 176230 256520 300010 221130 360310 3 3 0 3 3 3 3 3 3 3 3 79857000 71223000 8633800 19372 625 17794 98697;98698;98699;98700;98701 119494;119495;119496;119497;119498 119498 647 5 TQMLDQEELLASTR Oxidation (M) 1649.7931 0.79305028 906 P33176 KIF5B Kinesin-1 heavy chain yes yes 0 0 1 0 By MS/MS By MS/MS 3 0 2 1 1 49.512 49.296 2;3 0.0012233 15718 20211116_3430_TMUAki_TMT10x_P_F3 73.037 57.886 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19373 906 17795 98702;98703 119499;119500 119499 1115 2 TQMNSFLLSTASQQEIATLDNK Oxidation (M) 2455.1901 0.19006855 2475 Q96GM5;Q96GM5-2 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes no 0 0 1 0 By MS/MS 6 0 1 1 72.161 72.105 3 0.0006515 22527 20211116_3434_TMUAki_TMT10x_P_F6 65.438 50.017 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19374 2475 17796 98704 119501 119501 2768 1 TQNLPNCQLISR Unmodified 1442.73 0.72999651 964 P37268;P37268-5;P37268-4;P37268-3;P37268-2 FDFT1 Squalene synthase yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 42.225 42.465 2 8.09E-31 11027 20211116_3436_TMUAki_TMT10x_P_F8 272.1 205.82 1182300 1881000 0 2897300 2084500 1519300 1081800 2761700 3086900 1869300 2232100 1100800 1759000 98770 2863300 1972700 1660700 1211800 2718500 3022300 1862400 2179700 3 3 0 3 3 3 3 3 3 3 3 460910 723110 0 1113800 1682200 1145200 702900 1059100 1222300 711570 890760 429090 676200 47028 1109200 1587800 1162800 780270 1070700 1209000 709270 869540 1 1 0 1 1 1 1 1 1 1 1 721420 1157900 0 1783500 402250 374120 378850 1702600 1864600 1157700 1341300 671690 1082800 51741 1754200 384880 497910 431500 1647700 1813300 1153100 1310100 2 2 0 2 2 2 2 2 2 2 2 212160000 132980000 79178000 19375 964 17797 98705;98706;98707 119502;119503;119504 119502 3 TQNVLGEK Unmodified 887.47125 0.47124585 783 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 36.51 36.568 2 0.0027134 8059 20211116_3444_TMUAki_TMT10x_S_F5 106.2 48.477 2150000 3729100 515.96 3273100 3042800 3624900 2523400 1935100 2109800 1834700 2807600 2001800 3477900 185050 3376500 2904100 3633100 2573900 2049700 2189200 1796000 2686800 2 2 1 2 2 2 2 2 2 2 2 1605900 2745900 515.96 2446300 2497200 3127600 1914600 1434500 1571400 1370200 2098300 1495200 2561100 146100 2526900 2379800 3106200 1961900 1542000 1632300 1340900 2007900 1 1 1 1 1 1 1 1 1 1 1 544170 983150 0 826810 545610 497240 608790 500580 538410 464530 709280 506620 916800 38953 849600 524340 526960 612040 507710 556880 455170 678930 1 1 0 1 1 1 1 1 1 1 1 166950000 127450000 39501000 19376 783 17798 98708;98709;98710 119505;119506 119506 2 TQPDGTSVPGEPASPISQR Unmodified 1922.9334 0.93338358 1741 Q14980;Q14980-2;Q14980-5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By MS/MS 4 0 1 1 39.132 39.313 3 3.4506E-05 10436 20211116_3442_TMUAki_TMT10x_S_F4 79.383 67.023 206460 330250 5573.5 409830 221460 173410 202720 248240 271070 221820 313930 192270 308460 22521 408930 212210 192930 208730 247830 274290 217730 301510 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 206460 330250 5573.5 409830 221460 173410 202720 248240 271070 221820 313930 192270 308460 22521 408930 212210 192930 208730 247830 274290 217730 301510 1 1 1 1 1 1 1 1 1 1 1 22214000 0 22214000 19377 1741 17799 98711 119507 119507 1 TQPMTAQAASYR Oxidation (M) 1339.619 0.61904908 2534 Q96PK6 RBM14 RNA-binding protein 14 yes yes 0 0 1 0 By MS/MS 4.5 0.5 1 1 2 28.917 28.904 2 0.0075845 6313 20211116_3433_TMUAki_TMT10x_P_F5 68.786 59.603 30865 56484 364.22 52804 96841 88987 45582 35428 51561 32935 48182 28741 52692 3822.4 54670 91590 87218 49101 38649 52073 32268 46584 1 1 1 1 1 1 1 1 1 1 1 30865 56484 364.22 52804 96841 88987 45582 35428 51561 32935 48182 28741 52692 3822.4 54670 91590 87218 49101 38649 52073 32268 46584 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10761000 10761000 0 19378 2534 17800 98712;98713 119508 119508 2791 1 TQQAAQANITLQEQIEAIHK Unmodified 2234.1655 0.16550878 1810 Q15459;Q15459-2 SF3A1 Splicing factor 3A subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.12 0.927 3 1 4 3 5 56.688 57.071 3;4 4.042E-18 18124 20211116_3435_TMUAki_TMT10x_P_F7 142.23 125.16 90995000 157540000 877670 158420000 96233000 126280000 78227000 109880000 115330000 118200000 123040000 84725000 147000000 6647500 161070000 91796000 130260000 81439000 111250000 115980000 115090000 118460000 18 18 12 18 17 18 18 17 18 18 18 17884000 30160000 419260 28711000 27804000 43375000 22924000 27012000 26829000 24673000 26183000 16655000 28137000 1988700 29611000 26561000 42916000 23629000 28219000 27101000 24193000 25278000 6 6 5 6 6 6 6 6 6 6 6 73110000 127380000 458410 129710000 68429000 82901000 55303000 82866000 88498000 93522000 96861000 68070000 118870000 4658800 131460000 65234000 87341000 57810000 83027000 88876000 90900000 93180000 12 12 7 12 11 12 12 11 12 12 12 11631000000 4269800000 7360800000 19379 1810 17801 98714;98715;98716;98717;98718;98719;98720;98721 119509;119510;119511;119512;119513;119514;119515;119516;119517;119518;119519;119520;119521;119522;119523 119511 15 TQQTSPDKVDYEYSELLLYQNQVLR Unmodified 3029.4982 0.49819547 2714 Q9BXJ9;Q9BXJ9-4 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes no 0 0 0 1 By MS/MS By MS/MS 5 0.632 1 3 1 3 2 76.272 76.279 3;4 1.4049E-29 25414 20211116_3433_TMUAki_TMT10x_P_F5 170.16 159.99 8598500 15770000 172940 12837000 10506000 13806000 11015000 9847900 10088000 10106000 11420000 8007300 14704000 900760 13317000 10097000 13916000 11117000 10220000 10351000 9859700 10975000 4 4 4 4 4 4 4 4 4 4 4 4372400 7662800 134280 6648200 4053500 8673200 5354600 3939400 4435100 4662400 5315600 4072100 7146400 483170 6884200 3927500 8604400 5334900 4265900 4583400 4523800 5100500 2 2 2 2 2 2 2 2 2 2 2 4226100 8107400 38669 6188800 6452400 5133000 5660000 5908500 5653200 5443900 6104500 3935200 7557900 417590 6433300 6169300 5311700 5782400 5954300 5767500 5335900 5874800 2 2 2 2 2 2 2 2 2 2 2 2471100000 1412600000 1058500000 19380 2714 17802 98722;98723;98724;98725;98726 119524;119525;119526;119527 119524 4 TQRPADVIFATVR Unmodified 1472.81 0.80996139 913 P33993;P33993-3 MCM7 DNA replication licensing factor MCM7 yes no 0 0 0 1 By MS/MS By MS/MS 4 3.1 3 3 1 3 5 5 47.538 47.518 2;3 3.0699E-33 13172 20211116_3436_TMUAki_TMT10x_P_F8 225.17 184.14 21994000 38727000 323630 39108000 31590000 35862000 23316000 33107000 30993000 27031000 32861000 20480000 36138000 2216700 39821000 30099000 36672000 24320000 33618000 31261000 26650000 31642000 12 12 9 12 12 12 12 12 12 12 12 10645000 17748000 63941 18249000 20024000 25928000 14413000 15900000 15017000 13048000 15098000 9911800 16562000 1060800 18696000 19062000 25715000 14932000 16587000 15254000 12861000 14562000 6 6 4 6 6 6 6 6 6 6 6 11349000 20979000 259690 20859000 11567000 9933900 8902400 17207000 15976000 13983000 17763000 10568000 19575000 1155900 21125000 11037000 10957000 9388400 17031000 16007000 13789000 17080000 6 6 5 6 6 6 6 6 6 6 6 6922600000 4110400000 2812200000 19381 913 17803 98727;98728;98729;98730;98731;98732;98733;98734;98735;98736 119528;119529;119530;119531;119532;119533;119534;119535;119536;119537;119538;119539;119540 119534 13 TQSPCFGDDDPAKKEPR Unmodified 1946.8792 0.87923952 1561 Q12765;Q12765-2;Q12765-3 SCRN1 Secernin-1 yes no 0 0 0 2 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 34.625 34.676 4 1.1372E-29 8613 20211116_3433_TMUAki_TMT10x_P_F5 195.96 171.17 1645800 2620500 22820 4183500 9248400 4862000 2593700 2943400 4270100 1989900 3570400 1532400 2451000 245750 4167600 8700600 4868100 3030800 3060900 4245900 1982700 3465900 4 4 3 4 4 4 4 4 4 4 4 1308200 2138500 12346 3377800 8960300 4623900 2288800 2418900 3516200 1605000 2902100 1218000 2000000 208690 3377000 8423400 4584200 2708500 2546300 3501700 1601000 2818600 2 2 1 2 2 2 2 2 2 2 2 337610 482030 10474 805680 288090 238000 304930 524530 753860 384920 668250 314430 451000 37058 790580 277290 283920 322320 514670 744240 381690 647290 2 2 2 2 2 2 2 2 2 2 2 506930000 468210000 38713000 19382 1561 17804 98737;98738;98739 119541;119542;119543;119544 119542 4 TQSSASLAASYAAQQHPQAAASYR Unmodified 2464.1731 0.17311336 2534 Q96PK6 RBM14 RNA-binding protein 14 yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 3.11 4 2 2 12 10 10 35.75 35.859 3;4 1.7481E-115 9424 20211116_3436_TMUAki_TMT10x_P_F8 317.58 302.82 5491500 9158300 42872 11345000 8818400 9531200 5992600 8005300 9022100 7049100 8574800 5112900 8553800 469920 11392000 8382700 9787300 6320100 8187600 9030000 6923900 8285600 26 26 9 26 26 26 26 26 26 26 26 2759100 4224400 26620 5362000 6701800 7345200 3907600 3824100 4403700 3237200 3949800 2568800 3946100 257190 5419400 6354400 7281300 4125100 4048200 4442200 3185800 3824300 12 12 3 12 12 12 12 12 12 12 12 2732500 4933800 16253 5982700 2116600 2186000 2085100 4181200 4618300 3811800 4625000 2544200 4607700 212730 5972500 2028400 2505900 2195000 4139400 4587700 3738000 4461300 14 14 6 14 14 14 14 14 14 14 14 4119900000 2598800000 1521100000 19383 2534 17805 98740;98741;98742;98743;98744;98745;98746;98747;98748;98749;98750;98751;98752;98753;98754;98755;98756;98757;98758;98759 119545;119546;119547;119548;119549;119550;119551;119552;119553;119554;119555;119556;119557;119558;119559;119560;119561;119562;119563;119564;119565;119566;119567;119568;119569;119570;119571;119572 119555 28 TQSSLVPALTDFVR Unmodified 1532.8199 0.81985737 300 O60888;O60888-3;O60888-2 CUTA Protein CutA yes no 0 0 0 0 By MS/MS By MS/MS 6.11 2.77 2 3 4 4 5 74.135 74.154 2;3 6.884E-51 24109 20211116_3436_TMUAki_TMT10x_P_F8 284.92 224.48 56626000 95464000 34037 87930000 61041000 74320000 63657000 51086000 46943000 50074000 68144000 52717000 89050000 3772300 90032000 58531000 76030000 63916000 53083000 49240000 48946000 65080000 14 14 2 14 14 14 14 14 14 14 14 33279000 55065000 30283 51762000 29954000 47776000 34527000 26178000 23632000 25920000 38362000 30982000 51369000 2138900 52980000 28799000 48432000 34446000 27699000 25041000 25325000 36550000 7 7 1 7 7 7 7 7 7 7 7 23347000 40399000 3754.7 36168000 31087000 26544000 29129000 24908000 23311000 24154000 29782000 21735000 37681000 1633400 37052000 29732000 27598000 29469000 25384000 24199000 23621000 28530000 7 7 1 7 7 7 7 7 7 7 7 10890000000 5649500000 5240100000 19384 300 17806 98760;98761;98762;98763;98764;98765;98766;98767;98768 119573;119574;119575;119576;119577;119578;119579;119580;119581;119582;119583;119584;119585;119586 119577 14 TQTLDQENQQLQDQLR Unmodified 1956.9501 0.95009628 2700 Q9BW19 KIFC1 Kinesin-like protein KIFC1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 48.351 47.998 3 7.0168E-07 16313 20211116_3441_TMUAki_TMT10x_S_F3 101.68 89.724 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19385 2700 17807 98769 119587 119587 1 TQTPPVSPAPQPTEERLPSSPVYEDAASFK Unmodified 3225.583 0.58298773 1699 Q14247;Q14247-3;Q14247-2 CTTN Src substrate cortactin yes no 0 0 0 1 By MS/MS By MS/MS 5 0.707 1 2 1 3 1 59.552 59.668 4 3.996E-06 17443 20211116_3434_TMUAki_TMT10x_P_F6 66.98 59.358 3481400 5398800 663.11 5678100 3995200 6289000 4563500 3949400 4051700 3839400 4822200 3241500 5038700 149050 5782000 3844900 6316600 4583400 4130200 4171700 3754300 4628000 3 3 1 3 3 3 3 3 3 3 3 1762300 3096700 663.11 2985700 2184600 4215200 2641900 2384000 2429900 2173100 2592200 1640800 2889100 149050 3072100 2106000 4177100 2649300 2510000 2487100 2131100 2495600 2 2 1 2 2 2 2 2 2 2 2 1719200 2302100 0 2692400 1810700 2073900 1921600 1565400 1621800 1666300 2230000 1600700 2149600 0 2709800 1738900 2139500 1934000 1620300 1684600 1623200 2132300 1 1 0 1 1 1 1 1 1 1 1 2619200000 1916300000 702910000 19386 1699 17808 98770;98771;98772;98773 119588;119589;119590 119588 3 TQTQRPNLIGLTSGDMDVNPR Oxidation (M) 2328.1492 0.14920679 3067 Q9P2N5 RBM27 RNA-binding protein 27 yes yes 0 0 1 1 By MS/MS By MS/MS 6 0 2 1 1 43.329 43.438 3 4.4028E-12 11052 20211116_3445_TMUAki_TMT10x_S_F6 121.47 111.9 2223600 3945100 0 4191900 4543500 5194700 3152800 3593600 3791200 3225900 3552000 2070000 3682200 166710 4274000 4318300 5194200 3290500 3723600 3820500 3165700 3433900 3 3 0 3 3 3 3 3 3 3 3 1725500 2978000 0 3312000 4105500 4710400 2805700 2612000 2835700 2361600 2711500 1606200 2780100 131700 3376100 3901000 4665200 2914900 2754100 2879100 2316700 2619500 2 2 0 2 2 2 2 2 2 2 2 498180 967120 0 879910 438030 484360 347070 981670 955540 864340 840520 463810 902100 35011 897900 417360 529010 375640 969490 941390 848990 814380 1 1 0 1 1 1 1 1 1 1 1 538470000 292300000 246170000 19387 3067 17809 98774;98775 119591;119592;119593 119593 3117 3 TQTSDPAMLPTMIGLLAEAGVR 2 Oxidation (M) 2303.1501 0.150118 201 O43175 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 0 0 2 0 By MS/MS By MS/MS 6 0 2 1 1 75.846 75.804 3 6.1601E-05 23954 20211116_3434_TMUAki_TMT10x_P_F6 67.827 55.406 5702700 9600400 286300 8805100 7136200 7637200 6846300 5756600 5873500 5677800 6465000 5311900 8955200 759690 9021400 6852600 7810000 6929600 5945400 6038900 5548500 6218200 3 3 3 3 3 3 3 3 3 3 3 1743800 2994200 85955 2794300 1798300 3208200 1951700 2013300 2029300 2026700 2138900 1624300 2793200 225450 2871000 1733400 3215900 1974100 2107700 2064900 1978800 2059900 1 1 1 1 1 1 1 1 1 1 1 3958800 6606200 200340 6010800 5337800 4429000 4894700 3743200 3844200 3651200 4326100 3687500 6162100 534240 6150400 5119200 4594100 4955500 3837700 3973900 3569700 4158300 2 2 2 2 2 2 2 2 2 2 2 2146400000 954440000 1191900000 19388 201 17810 98776;98777 119594;119595;119596 119594 160;161 3 TQTSDPAMLPTMIGLLAEAGVR Oxidation (M) 2287.1552 0.15520337 201 O43175 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 0 0 1 0 By MS/MS By MS/MS 7.4 0.49 3 2 2 3 80.372 80.385 2;3 3.9639E-11 26562 20211116_3436_TMUAki_TMT10x_P_F8 118.35 108.06 4827600 7385300 72402 6869800 5220400 6875100 6643100 3848000 3727100 4545400 5733800 4495200 6889400 439940 7044800 5043500 6935500 6573700 4086000 3990500 4410600 5469100 4 4 2 4 4 4 4 4 4 4 4 2279900 3000400 0 2854500 2105700 3614400 2740200 1780800 1590100 2174900 2573500 2122600 2799200 153310 2933700 2032800 3594000 2710700 1915000 1702800 2107800 2452100 2 2 0 2 2 2 2 2 2 2 2 2547600 4384900 72402 4015300 3114700 3260700 3902900 2067200 2137000 2370600 3160400 2372600 4090200 286630 4111100 3010700 3341500 3863000 2171100 2287700 2302700 3017000 2 2 2 2 2 2 2 2 2 2 2 3758700000 1586900000 2171900000 19389 201 17810 98778;98779;98780;98781;98782 119597;119598;119599;119600;119601 119598 160;161 5 TQTSDPAMLPTMIGLLAEAGVR Unmodified 2271.1603 0.16028875 201 O43175 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 0 By MS/MS By MS/MS 7.57 0.495 3 4 4 3 81.662 81.67 2;3 4.6157E-77 26480 20211116_3447_TMUAki_TMT10x_S_F8 276.18 216.28 6192400 9640300 70195 10694000 7192400 6533000 8863400 2443100 2265900 3046700 6799900 5766300 8999400 466980 10773000 6942600 6820100 8698900 2708500 2754800 2950700 6419300 6 6 5 6 6 6 6 6 6 6 6 3716800 5523700 2121 6209300 4028800 4498400 5334400 1476300 1249300 1734500 3986500 3460700 5156700 188660 6260500 3896000 4620300 5216200 1661200 1546800 1683400 3760900 3 3 2 3 3 3 3 3 3 3 3 2475600 4116600 68073 4484300 3163600 2034600 3529000 966820 1016600 1312200 2813400 2305500 3842600 278320 4512100 3046700 2199800 3482800 1047200 1207900 1267400 2658400 3 3 3 3 3 3 3 3 3 3 3 3711600000 2257800000 1453800000 19390 201 17810 98783;98784;98785;98786;98787;98788;98789 119602;119603;119604;119605;119606;119607;119608 119608 7 TQTVTISDNANAVK Unmodified 1460.7471 0.74708636 617 P11171;P11171-2;P11171-4;P11171-5;P11171-3;P11171-6 EPB41 Protein 4.1 yes no 0 0 0 0 By MS/MS 4 0 1 1 39.572 39.77 3 9.7947E-05 10663 20211116_3442_TMUAki_TMT10x_S_F4 88.507 60.844 1404200 1954400 9030.5 2534600 1336800 986040 1208000 1410800 1398800 1413100 1784900 1307500 1825800 123890 2521500 1279100 1109600 1237900 1413000 1428400 1380000 1709900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1404200 1954400 9030.5 2534600 1336800 986040 1208000 1410800 1398800 1413100 1784900 1307500 1825800 123890 2521500 1279100 1109600 1237900 1413000 1428400 1380000 1709900 2 2 2 2 2 2 2 2 2 2 2 29333000 0 29333000 19391 617 17811 98790 119609;119610 119610 2 TQVAGGQLSFK Unmodified 1134.6033 0.60332266 1040 P46060 RANGAP1 Ran GTPase-activating protein 1 yes yes 0 0 0 0 By MS/MS 8 0 2 2 47.501 47.409 2;3 3.2623E-17 12585 20211116_3447_TMUAki_TMT10x_S_F8 185.18 126.2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19392 1040 17812 98791;98792 119611;119612 119612 2 TQVDAQLQVVR Unmodified 1255.6884 0.68844927 1950 Q5VTR2 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 41.723 41.798 2 0.035278 11288 20211116_3442_TMUAki_TMT10x_S_F4 63.212 33.545 4481700 7237900 0 9515800 9292900 11890000 6045700 7824100 7740000 6731300 5781700 4172500 6762300 383940 9582300 8825300 11875000 6354700 8127500 7730500 6619200 5638000 1 1 0 1 1 1 1 1 1 1 1 4481700 7237900 0 9515800 9292900 11890000 6045700 7824100 7740000 6731300 5781700 4172500 6762300 383940 9582300 8825300 11875000 6354700 8127500 7730500 6619200 5638000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 245570000 245570000 0 19393 1950 17813 98793;98794 119613;119614 119614 2 TQVEASEESALNHLQNPGDAAEGR Unmodified 2522.1633 0.16333653 3332 Q9Y605 MRFAP1 MORF4 family-associated protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 48.327 48.126 3 1.6977E-60 15286 20211116_3430_TMUAki_TMT10x_P_F3 232.87 215.84 2321500 4197200 3058.1 4658900 2853900 3576200 2197500 2467000 2654600 2102900 2743000 2161500 3918200 192430 4704100 2719400 3685100 2277400 2553400 2683700 2068800 2643400 5 5 3 5 5 5 5 5 5 5 5 1360300 2328100 2023.9 2699500 2198400 2878400 1654000 1335400 1467200 1196700 1603500 1266500 2173700 123460 2730400 2094100 2886600 1700400 1431500 1505600 1174400 1542600 3 3 2 3 3 3 3 3 3 3 3 961290 1869100 1034.2 1959400 655520 697850 543470 1131600 1187400 906260 1139500 895000 1744400 68970 1973700 625310 798490 577050 1121900 1178100 894390 1100700 2 2 1 2 2 2 2 2 2 2 2 347830000 192000000 155820000 19394 3332 17814 98795;98796;98797 119615;119616;119617;119618;119619;119620 119617 6 TQVTVQYMQDR Oxidation (M) 1383.6453 0.64526383 885 P31153;P31153-2 MAT2A S-adenosylmethionine synthase isoform type-2 yes no 0 0 1 0 By MS/MS By MS/MS 4.43 1.12 1 2 3 6 2 5 9 33.505 33.517 2;3 2.389E-05 7042 20211116_3444_TMUAki_TMT10x_S_F5 113.27 77.729 4829100 7587300 42562 7689700 8717600 8423000 5722200 5795800 5909700 4929800 7237200 4496300 7080100 446030 7848500 8283000 8476500 5966700 5999400 6051000 4850400 6940300 13 13 6 13 13 13 13 13 13 13 13 3504700 5420700 9615 5331600 7300300 7276200 4372500 4422000 4423600 3707800 5385600 3263000 5057700 314100 5474500 6924400 7228400 4589900 4618600 4532100 3650700 5165500 5 5 2 5 5 5 5 5 5 5 5 1324500 2166600 32947 2358100 1417300 1146800 1349700 1373800 1486100 1222000 1851500 1233400 2022400 131930 2374000 1358600 1248100 1376800 1380800 1518800 1199700 1774800 8 8 4 8 8 8 8 8 8 8 8 557660000 415440000 142220000 19395 885 17815 98798;98799;98800;98801;98802;98803;98804;98805;98806;98807;98808;98809;98810;98811 119621;119622;119623;119624;119625;119626;119627;119628;119629;119630;119631;119632;119633 119632 1071 13 TQVTVQYMQDR Unmodified 1367.6503 0.65034921 885 P31153;P31153-2 MAT2A S-adenosylmethionine synthase isoform type-2 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.632 1 3 1 1 4 39.624 39.772 2;3 1.1163E-23 10542 20211116_3442_TMUAki_TMT10x_S_F4 252.51 206.51 2533600 3986400 7340.3 4647600 2389100 1622100 2230500 1922000 1865100 1873300 3339700 2358800 3722200 188750 4649400 2285600 1845800 2259400 1937600 1965800 1831600 3176100 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2533600 3986400 7340.3 4647600 2389100 1622100 2230500 1922000 1865100 1873300 3339700 2358800 3722200 188750 4649400 2285600 1845800 2259400 1937600 1965800 1831600 3176100 4 4 2 4 4 4 4 4 4 4 4 220950000 0 220950000 19396 885 17815 98812;98813;98814;98815;98816 119634;119635;119636;119637;119638 119635 5 TQYACPPFDLTECSFK Unmodified 1962.8492 0.84918495 630 P11717 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 0 0 0 0 By MS/MS 6 0 1 1 71.639 71.55 3 0.043653 22690 20211116_3445_TMUAki_TMT10x_S_F6 42.044 24.555 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19397 630 17816 98817 119639 119639 1 TQYNQVPSEDFER Unmodified 1611.7165 0.71651452 1423 P78310;P78310-7;P78310-2;P78310-6 CXADR Coxsackievirus and adenovirus receptor yes no 0 0 0 0 By MS/MS 3 0 1 1 40.171 40.224 2 5.3639E-18 12012 20211116_3430_TMUAki_TMT10x_P_F3 150.14 117.54 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19398 1423 17817 98818 119640 119640 1 TQYSSAMLESLLPGIR Unmodified 1764.908 0.90802046 1246 P55786;P55786-2 NPEPPS Puromycin-sensitive aminopeptidase yes no 0 0 0 0 By MS/MS By MS/MS 2 0 3 2 1 78.616 78.589 2 4.9091E-47 25883 20211116_3440_TMUAki_TMT10x_S_F2 253.15 211.75 3122700 4936600 0 5392800 3851000 2651800 4024100 1814000 1388600 2066600 3544300 2907300 4608100 243850 5428300 3695300 2851700 3991200 1894200 1604500 2007900 3352400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3122700 4936600 0 5392800 3851000 2651800 4024100 1814000 1388600 2066600 3544300 2907300 4608100 243850 5428300 3695300 2851700 3991200 1894200 1604500 2007900 3352400 1 1 0 1 1 1 1 1 1 1 1 1108300000 754100000 354150000 19399 1246 17818 98819;98820;98821 119641;119642 119642 2 TQYSSAMLESLLPGIR Oxidation (M) 1780.9029 0.90293508 1246 P55786;P55786-2 NPEPPS Puromycin-sensitive aminopeptidase yes no 0 0 1 0 By MS/MS By MS/MS 7.8 0.4 1 4 4 1 72.286 72.223 3 5.0549E-10 23142 20211116_3436_TMUAki_TMT10x_P_F8 115.26 103.09 6813600 11499000 69095 11096000 8280100 7315500 7972100 7634700 7087200 7559300 8836100 6344400 10729000 621270 11292000 7933900 7692900 8075200 7744100 7310800 7385900 8469700 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6813600 11499000 69095 11096000 8280100 7315500 7972100 7634700 7087200 7559300 8836100 6344400 10729000 621270 11292000 7933900 7692900 8075200 7744100 7310800 7385900 8469700 3 3 1 3 3 3 3 3 3 3 3 933750000 328860000 604890000 19400 1246 17818 98822;98823;98824;98825;98826 119643;119644;119645;119646;119647;119648 119645 1692 6 TRAEAEAAAVHGAR Unmodified 1408.7171 0.71712364 1940 Q5T8P6;Q5T8P6-2;Q5T8P6-3;Q5T8P6-5;Q5T8P6-4 RBM26 RNA-binding protein 26 yes no 0 0 0 1 By MS/MS 3 0 2 2 26.728 26.435 3;4 2.3656E-19 7667 20211116_3441_TMUAki_TMT10x_S_F3 174.59 136.19 134420 225230 4846.5 204060 165470 145890 174670 171600 139010 201830 180240 125200 210090 16096 208800 159180 152780 175590 174080 144440 195870 172590 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 134420 225230 4846.5 204060 165470 145890 174670 171600 139010 201830 180240 125200 210090 16096 208800 159180 152780 175590 174080 144440 195870 172590 2 2 2 2 2 2 2 2 2 2 2 24405000 0 24405000 19401 1940 17819 98827;98828 119649;119650 119649 2 TRDDEPVCGRPLGIR Unmodified 1739.8737 0.87370063 2878 Q9HDC9;Q9HDC9-2 APMAP Adipocyte plasma membrane-associated protein yes no 0 0 0 2 By MS/MS 4.5 0.5 2 2 4 31.628 31.61 3;4 3.8427E-35 7024 20211116_3431_TMUAki_TMT10x_P_F4 238.02 207.96 1716800 2757300 20747 3170000 5003200 4356000 2448800 2334600 2731300 2023900 2705400 1598500 2574400 195220 3222500 4733500 4319000 2626200 2466300 2765400 1989400 2610600 4 4 3 4 4 4 4 4 4 4 4 1716800 2757300 20747 3170000 5003200 4356000 2448800 2334600 2731300 2023900 2705400 1598500 2574400 195220 3222500 4733500 4319000 2626200 2466300 2765400 1989400 2610600 4 4 3 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 688240000 688240000 0 19402 2878 17820 98829;98830;98831;98832 119651;119652;119653;119654 119652 4 TRDDGDEEGLLTHSEEELEHSQDTDADDGALQ Unmodified 3526.4728 0.47278117 3158 Q9UKM9;Q9UKM9-2 RALY RNA-binding protein Raly yes no 0 0 0 1 By MS/MS By matching 1 0 2 1 1 57.298 57.147 4 1.9073E-69 16956 20211116_3428_TMUAki_TMT10x_P_F1 228.41 220.55 3029800 4737800 0 4707400 3024700 7123100 3170500 3308300 2949000 2922000 3934300 2820900 4420700 140270 4840600 2902700 7021800 3201500 3544600 3044700 2869700 3764800 2 2 0 2 2 2 2 2 2 2 2 3029800 4737800 0 4707400 3024700 7123100 3170500 3308300 2949000 2922000 3934300 2820900 4420700 140270 4840600 2902700 7021800 3201500 3544600 3044700 2869700 3764800 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3720200000 2221400000 1498800000 19403 3158 17821 98833;98834 119655;119656 119655 2 TRDELEVIHLIEEHR Unmodified 1887.9803 0.9802742 602 P10155;P10155-5;P10155-3;P10155-4 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes no 0 0 0 1 By MS/MS By MS/MS 1 0 4 2 2 55.294 55.144 4;5 3.3632E-19 16033 20211116_3428_TMUAki_TMT10x_P_F1 165.36 152.98 3002100 4862900 7748.3 5016100 3893100 5514100 3651600 4208700 3934900 3789300 4343400 2795300 4538100 264600 5113900 3727000 5557300 3725400 4332400 4005200 3718100 4177300 4 4 1 4 4 4 4 4 4 4 4 1815800 3033600 0 2937100 2652000 4482000 2518000 2746800 2511700 2342200 2672700 1690700 2830400 158380 3026300 2539200 4431700 2560900 2868200 2561200 2304200 2573300 2 2 0 2 2 2 2 2 2 2 2 1186300 1829200 7748.3 2079000 1241100 1032000 1133600 1461800 1423200 1447100 1670700 1104600 1707800 106220 2087700 1187700 1125600 1164500 1464200 1444000 1413900 1604000 2 2 1 2 2 2 2 2 2 2 2 2523300000 1885700000 637560000 19404 602 17822 98835;98836;98837;98838 119657;119658;119659;119660 119657 4 TRDFKPGDLIFAK Unmodified 1506.8195 0.81946344 336 O75475;O75475-2;O75475-3 PSIP1 PC4 and SFRS1-interacting protein yes no 0 0 0 2 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 55.486 55.317 4 5.4445E-05 18307 20211116_3439_TMUAki_TMT10x_S_F1 99.705 64.818 15237000 24964000 167520 26276000 16845000 17312000 14651000 19781000 19160000 17386000 20684000 14188000 23299000 1424800 26579000 16106000 18245000 15116000 19916000 19349000 17079000 19906000 5 5 3 5 5 5 5 5 5 5 5 2606400 3804400 0 4239300 3732400 5572300 3225300 3182800 3185600 2789800 3000600 2426700 3551600 225630 4314000 3565600 5540800 3296900 3344900 3236000 2740800 2900300 1 1 0 1 1 1 1 1 1 1 1 12630000 21160000 167520 22036000 13112000 11740000 11426000 16598000 15974000 14596000 17683000 11761000 19748000 1199200 22265000 12540000 12704000 11819000 16571000 16113000 14338000 17005000 4 4 3 4 4 4 4 4 4 4 4 1499900000 582510000 917440000 19405 336 17823 98839;98840;98841 119661;119662;119663;119664;119665 119662 5 TREEECHFYAGGQVYPGEASR Unmodified 2442.0659 0.065871094 1605 Q13162 PRDX4 Peroxiredoxin-4 yes yes 0 0 0 1 By MS/MS By MS/MS 3.33 1.35 2 2 4 3 4 8 7 35.177 35.161 3;4 1.1919E-67 8434 20211116_3431_TMUAki_TMT10x_P_F4 242.71 227.5 5467300 9411800 56717 10288000 8871300 8733200 6705900 6332500 6683600 5936200 7821800 5090900 8785500 300460 10410000 8454700 8938700 6914600 6547700 6840800 5813900 7510200 21 21 12 21 21 21 21 21 21 21 21 3076100 5283500 29270 5760400 6788300 6881300 4807400 3873400 3761700 3652500 4511800 2864400 4931800 106820 5859600 6460800 6873400 4947500 4083400 3899200 3576300 4329100 11 11 6 11 11 11 11 11 11 11 11 2391200 4128300 27447 4527600 2083100 1851900 1898600 2459100 2921900 2283700 3310000 2226500 3853600 193640 4550700 1993900 2065300 1967100 2464400 2941500 2237600 3181100 10 10 6 10 10 10 10 10 10 10 10 5542600000 4035500000 1507100000 19406 1605 17824 98842;98843;98844;98845;98846;98847;98848;98849;98850;98851;98852;98853;98854;98855;98856 119666;119667;119668;119669;119670;119671;119672;119673;119674;119675;119676;119677;119678;119679;119680;119681;119682;119683;119684;119685;119686 119674 21 TREEIQEVR Unmodified 1158.5993 0.59929991 557 P08559;P08559-3;P08559-4;P08559-2;P29803 PDHA1;PDHA2 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial;Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial yes no 0 0 0 1 By MS/MS By matching 1.33 0.471 2 1 2 1 25.334 25.289 3 0.00032549 6580 20211116_3429_TMUAki_TMT10x_P_F2 117.02 79.027 234410 380140 6193.2 353250 251900 329980 247540 171210 186760 178880 273050 218310 354610 25451 361920 241800 334020 249440 182310 195720 174390 260730 2 2 2 2 2 2 2 2 2 2 2 234410 380140 6193.2 353250 251900 329980 247540 171210 186760 178880 273050 218310 354610 25451 361920 241800 334020 249440 182310 195720 174390 260730 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10999000 7816300 3182500 19407 557 17825 98857;98858;98859 119687;119688 119688 2 TREGNDLYHEMIESGVINLK Oxidation (M) 2333.1322 0.13215975 518 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 1 1 By MS/MS By MS/MS 4.6 1.02 2 2 4 2 6 4 50.481 50.537 3;4 3.7726E-32 13716 20211116_3444_TMUAki_TMT10x_S_F5 189.55 172.27 32026000 57884000 886330 62207000 51902000 71430000 37834000 63478000 65287000 57752000 51110000 29824000 54028000 3229200 63294000 49449000 72021000 39963000 64770000 64714000 56639000 49743000 12 12 9 12 12 12 12 12 12 12 12 17258000 30660000 503340 35422000 35516000 54857000 23756000 32647000 35600000 32010000 27165000 16071000 28627000 1887900 36091000 33771000 54187000 25078000 34295000 35399000 31288000 26467000 6 6 5 6 6 6 6 6 6 6 6 14768000 27224000 382990 26785000 16387000 16573000 14079000 30831000 29687000 25742000 23945000 13753000 25401000 1341300 27204000 15677000 17834000 14885000 30475000 29315000 25351000 23277000 6 6 4 6 6 6 6 6 6 6 6 8866600000 5110000000 3756700000 19408 518 17826 98860;98861;98862;98863;98864;98865;98866;98867;98868;98869 119689;119690;119691;119692;119693;119694;119695;119696;119697;119698;119699;119700;119701;119702 119700 419 14 TREGNDLYHEMIESGVINLK Unmodified 2317.1372 0.13724512 518 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 1 By MS/MS 5.5 0.5 1 1 2 66.346 66.396 4 2.1733E-24 20182 20211116_3434_TMUAki_TMT10x_P_F6 169.25 144.46 10637000 17272000 257830 18381000 10736000 16709000 13205000 7958900 6338000 7978000 11789000 9906400 16120000 1111500 18648000 10371000 16928000 13053000 8534200 6941800 7791000 11203000 3 3 2 3 3 3 3 3 3 3 3 10637000 17272000 257830 18381000 10736000 16709000 13205000 7958900 6338000 7978000 11789000 9906400 16120000 1111500 18648000 10371000 16928000 13053000 8534200 6941800 7791000 11203000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1958000000 1958000000 0 19409 518 17826 98870;98871 119703;119704;119705 119704 3 TREPLILEEEREMER Oxidation (M) 1944.9575 0.95748984 3201 Q9UNX4 WDR3 WD repeat-containing protein 3 yes yes 0 0 1 2 By MS/MS By matching 1.75 0.829 2 1 1 2 2 34.849 34.731 4 0.0013392 7824 20211116_3428_TMUAki_TMT10x_P_F1 64.401 52.787 792560 1382400 0 1233500 1956500 1991400 1090000 1068900 1288200 1048600 1149300 737810 1289300 64036 1280300 1853000 1961200 1157100 1132800 1296900 1025000 1113000 2 2 0 2 2 2 2 2 2 2 2 792560 1382400 0 1233500 1956500 1991400 1090000 1068900 1288200 1048600 1149300 737810 1289300 64036 1280300 1853000 1961200 1157100 1132800 1296900 1025000 1113000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 504060000 388210000 115850000 19410 3201 17827 98872;98873;98874;98875 119706;119707 119706 3191 2 TRETVSIEVK Unmodified 1160.6401 0.6401021 1159 P51608;P51608-2 MECP2 Methyl-CpG-binding protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 35.287 35.317 3 2.601E-07 7480 20211116_3444_TMUAki_TMT10x_S_F5 107.12 56.025 2409700 3736400 28940 4032100 4620800 4131600 2764100 2225400 2313700 2117600 2935100 2243900 3487500 257720 4094000 4385700 4160100 2886900 2355700 2395500 2072600 2812100 2 2 2 2 2 2 2 2 2 2 2 2409700 3736400 28940 4032100 4620800 4131600 2764100 2225400 2313700 2117600 2935100 2243900 3487500 257720 4094000 4385700 4160100 2886900 2355700 2395500 2072600 2812100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 149330000 143550000 5787000 19411 1159 17828 98876;98877;98878;98879 119708;119709;119710 119710 3 TREVLIETAK Unmodified 1158.6608 0.66083754 1596 Q13126;Q13126-7;Q13126-4;Q13126-6;Q13126-5;Q13126-3;Q13126-2 MTAP S-methyl-5'-thioadenosine phosphorylase yes no 0 0 0 1 By MS/MS 5 0 1 1 36.624 36.786 3 0.072181 8233 20211116_3444_TMUAki_TMT10x_S_F5 47.712 28.441 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19412 1596 17829 98880 119711 119711 1 TRFPPEPNGILHIGHAK Unmodified 1883.0166 0.016600123 1065 P47897;P47897-2 QARS Glutamine--tRNA ligase yes no 0 0 0 1 By matching By MS/MS 1.67 0.471 1 2 2 1 40.741 40.669 5 0.00031092 10737 20211116_3440_TMUAki_TMT10x_S_F2 75.143 61.943 989300 1525700 45196 1738200 846960 949780 871810 1417600 1573700 1297900 1463600 921470 1424400 122150 1746500 815470 1026700 904750 1414100 1566300 1272600 1415300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 989300 1525700 45196 1738200 846960 949780 871810 1417600 1573700 1297900 1463600 921470 1424400 122150 1746500 815470 1026700 904750 1414100 1566300 1272600 1415300 2 2 2 2 2 2 2 2 2 2 2 241930000 171420000 70512000 19413 1065 17830 98881;98882;98883 119712;119713 119713 2 TRIEGLLAAFPK Unmodified 1314.766 0.76597131 1072 P48444 ARCN1 Coatomer subunit delta yes yes 0 0 0 1 By MS/MS By MS/MS 2.67 0.471 2 4 3 3 65.374 65.035 3;4 1.416E-07 21719 20211116_3429_TMUAki_TMT10x_P_F2 134.18 96.707 21219000 34602000 225080 33227000 26425000 35359000 26167000 25516000 24482000 26165000 28112000 19758000 32282000 2001800 34026000 25342000 35669000 26504000 26459000 25109000 25527000 27007000 7 7 4 7 7 7 7 7 7 7 7 12748000 20320000 222650 19538000 15449000 26476000 16648000 14993000 13965000 15307000 16463000 11871000 18957000 1298100 20091000 14856000 26286000 16741000 15833000 14413000 14937000 15804000 4 4 3 4 4 4 4 4 4 4 4 8471000 14282000 2430.6 13688000 10976000 8883400 9518800 10522000 10518000 10858000 11650000 7887000 13324000 703710 13935000 10486000 9383000 9762400 10625000 10696000 10591000 11203000 3 3 1 3 3 3 3 3 3 3 3 4875300000 2503700000 2371600000 19414 1072 17831 98884;98885;98886;98887;98888;98889 119714;119715;119716;119717;119718;119719;119720 119714 7 TRKPLEALYGYDYFAR Unmodified 1961.9999 0.99994701 2121 Q86WA6;Q86WA6-2 BPHL Valacyclovir hydrolase yes no 0 0 0 2 By MS/MS 3 0 1 1 58.814 58.404 4 0.0013098 20571 20211116_3441_TMUAki_TMT10x_S_F3 65.175 58.605 3447700 5783600 8957.5 5829900 3682100 2921800 3533700 3671900 3294200 3342600 4263500 3210300 5396900 297470 5900700 3527400 3172800 3584700 3685600 3396100 3278100 4082800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3447700 5783600 8957.5 5829900 3682100 2921800 3533700 3671900 3294200 3342600 4263500 3210300 5396900 297470 5900700 3527400 3172800 3584700 3685600 3396100 3278100 4082800 1 1 1 1 1 1 1 1 1 1 1 406900000 0 406900000 19415 2121 17832 98890 119721 119721 1 TRLEILEK Unmodified 1000.5917 0.59169534 2177 Q8N0X7 SPG20 Spartin yes yes 0 0 0 1 By MS/MS 6 0 1 1 43.02 43.185 3 0.0030542 11033 20211116_3445_TMUAki_TMT10x_S_F6 94.297 8.9193 1206800 1760900 0 1779300 1116200 901940 998830 1017400 938810 851040 1296800 1123600 1643200 89685 1800700 1066700 975550 1017400 1023600 970410 838020 1239900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1206800 1760900 0 1779300 1116200 901940 998830 1017400 938810 851040 1296800 1123600 1643200 89685 1800700 1066700 975550 1017400 1023600 970410 838020 1239900 1 1 0 1 1 1 1 1 1 1 1 52923000 0 52923000 19416 2177 17833 98891 119722 119722 1 TRPAANPIQFTLNK Unmodified 1569.8627 0.86272524 791 P23921 RRM1 Ribonucleoside-diphosphate reductase large subunit yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 49.641 49.606 3 1.4033E-06 14127 20211116_3431_TMUAki_TMT10x_P_F4 115.68 91.801 18355000 30570000 416010 34796000 22494000 24805000 16671000 18797000 18821000 17331000 23137000 17093000 28541000 1967400 35050000 21447000 25751000 17281000 19371000 19206000 16987000 22186000 5 5 5 5 5 5 5 5 5 5 5 8613700 13492000 228500 16065000 14763000 17677000 10483000 8300700 8546000 7727400 10343000 8021900 12599000 1013200 16231000 14062000 17698000 10798000 8895700 8842600 7570600 9921400 2 2 2 2 2 2 2 2 2 2 2 9741000 17078000 187510 18732000 7731200 7128600 6187900 10496000 10275000 9604000 12795000 9071200 15942000 954200 18819000 7385600 8053500 6483900 10475000 10364000 9416500 12264000 3 3 3 3 3 3 3 3 3 3 3 2403300000 1470100000 933270000 19417 791 17834 98892;98893;98894;98895 119723;119724;119725;119726;119727 119724 5 TRPEGEPSSLSPEELAFAR Unmodified 2072.0174 0.017447563 2644 Q9BRT9 GINS4 DNA replication complex GINS protein SLD5;DNA replication complex GINS protein SLD5, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 50.605 50.563 3 2.4014E-58 16209 20211116_3430_TMUAki_TMT10x_P_F3 250.39 204.78 12472000 20678000 447540 22405000 19660000 25136000 16032000 20553000 21558000 18905000 19955000 11616000 19301000 1543800 22776000 18786000 25336000 16623000 21079000 21633000 18531000 19299000 6 6 5 6 6 6 6 6 6 6 6 7616300 12569000 348270 14438000 14149000 20107000 11524000 12361000 12959000 11387000 12309000 7094000 11735000 1039600 14682000 13521000 19960000 11871000 12929000 13098000 11162000 11894000 4 4 3 4 4 4 4 4 4 4 4 4855700 8108600 99276 7967000 5511000 5029500 4507700 8192300 8598900 7517200 7646300 4521800 7565600 504270 8093700 5265000 5376000 4751500 8149500 8535100 7369500 7405600 2 2 2 2 2 2 2 2 2 2 2 2743000000 1511600000 1231400000 19418 2644 17835 98896;98897;98898;98899 119728;119729;119730;119731;119732;119733 119728 6 TRPFEYLR Unmodified 1080.5716 0.5716286 2346 Q92600;Q92600-3;Q92600-2 RQCD1 Cell differentiation protein RCD1 homolog yes no 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 36.868 37.048 3 0.0033215 8076 20211116_3447_TMUAki_TMT10x_S_F8 92.838 65.357 1293800 2218300 8330.6 2308600 2266000 2472000 1489800 2728000 2267900 2106200 2207300 1204600 2070200 120660 2351300 2153200 2514000 1575800 2742200 2271000 2082600 2131200 5 5 3 5 5 5 5 5 5 5 5 545810 920070 4910 931760 1515900 1813900 805710 1411500 1039400 1034200 995250 508240 858570 63414 962910 1436000 1784400 861630 1444100 1045600 1025600 961440 2 2 2 2 2 2 2 2 2 2 2 747960 1298200 3420.5 1376900 750050 658100 684060 1316600 1228600 1072000 1212100 696380 1211600 57242 1388300 717210 729570 714170 1298000 1225400 1057000 1169700 3 3 1 3 3 3 3 3 3 3 3 101540000 54729000 46806000 19419 2346 17836 98900;98901;98902;98903 119734;119735;119736;119737;119738 119738 5 TRPFFDNLLQDELQHLK Unmodified 2113.0956 0.095638305 3033 Q9NZJ4;Q9NZJ4-2 SACS Sacsin yes no 0 0 0 1 By MS/MS 7.5 0.5 1 1 2 75.986 76.001 4 2.9949E-08 26571 20211116_3446_TMUAki_TMT10x_S_F7 119.23 95.434 2164300 3684500 46581 3223300 2745200 2165800 2445600 2080000 1958500 2230100 2505900 2015500 3436300 230980 3305000 2627600 2269700 2481200 2123600 2033100 2171900 2400400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2164300 3684500 46581 3223300 2745200 2165800 2445600 2080000 1958500 2230100 2505900 2015500 3436300 230980 3305000 2627600 2269700 2481200 2123600 2033100 2171900 2400400 1 1 1 1 1 1 1 1 1 1 1 355290000 0 355290000 19420 3033 17837 98904;98905 119739 119739 1 TRPSSTVIK Unmodified 987.57129 0.57129425 1930 Q5SSJ5;Q5SSJ5-2;Q5SSJ5-3 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 29.058 29.098 3 0.0012059 7533 20211116_3439_TMUAki_TMT10x_S_F1 87.298 31.749 304310 554550 2656.9 435400 392670 487780 417600 383740 369050 346890 437290 283320 517010 23936 453370 376970 491350 420780 394310 379990 340310 419720 2 2 1 2 2 2 2 2 2 2 2 143080 246180 2656.9 197450 218070 286930 187160 184600 164360 150460 202830 133240 229530 15389 206210 208480 284480 190760 191830 169570 148350 194480 1 1 1 1 1 1 1 1 1 1 1 161230 308370 0 237940 174600 200850 230430 199140 204690 196430 234460 150080 287480 8547.4 247160 168490 206870 230020 202480 210420 191950 225250 1 1 0 1 1 1 1 1 1 1 1 12015000 6004800 6009800 19421 1930 17838 98906;98907 119740;119741 119741 2 TRPTTLGSSQFSGSGIDER Unmodified 1994.9657 0.96574634 2569 Q99081;Q99081-3 TCF12 Transcription factor 12 yes no 0 0 0 1 By MS/MS By matching 4.67 0.471 1 2 2 1 36.317 36.376 3 6.2608E-58 9306 20211116_3433_TMUAki_TMT10x_P_F5 238.79 193.68 221180 359790 0 453240 670010 609630 364280 339700 399970 247810 368160 205920 336070 21396 458120 634540 605340 386600 356260 404210 245810 356140 1 1 0 1 1 1 1 1 1 1 1 221180 359790 0 453240 670010 609630 364280 339700 399970 247810 368160 205920 336070 21396 458120 634540 605340 386600 356260 404210 245810 356140 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 209690000 171590000 38097000 19422 2569 17839 98908;98909;98910 119742 119742 1 TRPVVAAGAVGLAQR Unmodified 1464.8525 0.85249491 623 P11310;P11310-2 ACADM Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 3.1 1.37 2 1 3 2 2 6 4 35.41 35.385 3 8.5082E-34 8527 20211116_3431_TMUAki_TMT10x_P_F4 231.13 207.75 4591400 7519000 43783 8233000 7137400 6415300 4635100 5215500 5369600 4782100 6410400 4275300 7018700 448710 8321400 6782900 6620600 4855200 5350300 5467400 4688300 6151600 8 8 5 8 8 8 8 8 8 8 8 2726500 4396000 12857 4909800 5166500 4674500 2857700 3074400 3229700 2817300 3773600 2538700 4103900 269640 4969000 4896400 4740600 3030900 3198900 3288700 2762100 3623400 4 4 2 4 4 4 4 4 4 4 4 1865000 3123000 30926 3323200 1970900 1740800 1777400 2141000 2139900 1964800 2636800 1736600 2914800 179070 3352400 1886400 1880000 1824300 2151400 2178700 1926200 2528200 4 4 3 4 4 4 4 4 4 4 4 2369000000 1359900000 1009200000 19423 623 17840 98911;98912;98913;98914;98915;98916;98917;98918;98919;98920 119743;119744;119745;119746;119747;119748;119749;119750;119751;119752 119747 10 TRQELEK Unmodified 902.48214 0.48214489 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 1 By MS/MS 4 0 1 1 27.686 27.735 3 0.064399 5465 20211116_3431_TMUAki_TMT10x_P_F4 49.554 10.94 267700 413360 6016.9 317350 280030 495600 284590 176970 172820 273340 299430 249300 385350 27975 333200 268990 486730 284970 198900 185200 262990 284930 1 1 1 1 1 1 1 1 1 1 1 267700 413360 6016.9 317350 280030 495600 284590 176970 172820 273340 299430 249300 385350 27975 333200 268990 486730 284970 198900 185200 262990 284930 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1801100 1801100 0 19424 935 17841 98921 119753 119753 1 TRQGVDDAFYTLVR Unmodified 1639.8318 0.83181904 478 P01116-2 KRAS GTPase KRas;GTPase KRas, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 52.49 52.73 3 3.058E-24 16947 20211116_3446_TMUAki_TMT10x_S_F7 197.17 160.73 10038000 17552000 426430 18464000 13811000 15222000 10882000 14352000 13690000 12727000 14669000 9349800 16381000 1282500 18723000 13195000 15688000 11278000 14587000 13839000 12497000 14121000 4 4 4 4 4 4 4 4 4 4 4 4348700 7320000 186140 8234800 7541300 9916500 5961000 6425500 6459100 5528100 6290400 4050500 6833800 578730 8361400 7202500 9920100 6144600 6682300 6543300 5436000 6073400 2 2 2 2 2 2 2 2 2 2 2 5689500 10232000 240290 10229000 6269800 5305800 4920700 7926400 7230400 7198700 8379000 5299300 9547400 703770 10362000 5992400 5767800 5133300 7905000 7295400 7060600 8047400 2 2 2 2 2 2 2 2 2 2 2 1792000000 592200000 1199800000 19425 478 17842 98922;98923;98924 119754;119755;119756;119757 119757 4 TRQGVEDAFYTLVR Unmodified 1653.8475 0.84746911 477 P01111;P01112 NRAS;HRAS GTPase NRas;GTPase HRas;GTPase HRas, N-terminally processed yes no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 57.045 57.392 3 3.819E-30 18273 20211116_3435_TMUAki_TMT10x_P_F7 215.48 187.3 13509000 20489000 75808 17211000 16313000 21522000 15035000 17638000 14965000 15924000 19393000 12578000 19106000 1160400 17854000 15610000 21572000 15316000 18078000 15384000 15623000 18571000 4 4 2 4 4 4 4 4 4 4 4 9113900 13676000 75808 10976000 9777800 16287000 10207000 11185000 9870900 9711300 13002000 8486500 12751000 835550 11467000 9390800 16150000 10320000 11586000 10168000 9545300 12446000 2 2 2 2 2 2 2 2 2 2 2 4394800 6813500 0 6235300 6535600 5235700 4828400 6452800 5093800 6212500 6391100 4091400 6355500 324820 6386900 6219200 5422800 4995100 6492200 5216500 6077300 6125100 2 2 0 2 2 2 2 2 2 2 2 2275200000 1104800000 1170400000 19426 477 17843 98925;98926;98927;98928 119758;119759;119760;119761 119758 4 TRRDEPTGEVLSLVGK Unmodified 1755.9479 0.94791144 352 O75643;O75643-2 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 0 0 0 2 By MS/MS 6 0 1 1 49.472 49.572 4 0.0012894 13271 20211116_3434_TMUAki_TMT10x_P_F6 65.467 40.013 6217700 9101700 40475 10720000 13636000 10482000 10603000 3827800 4015600 4899600 7208700 5789600 8498900 657100 10819000 13001000 10544000 10710000 4259800 4486800 4741000 6855100 1 1 1 1 1 1 1 1 1 1 1 6217700 9101700 40475 10720000 13636000 10482000 10603000 3827800 4015600 4899600 7208700 5789600 8498900 657100 10819000 13001000 10544000 10710000 4259800 4486800 4741000 6855100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 578500000 578500000 0 19427 352 17844 98929 119762 119762 1 TRSNPENNVGLITLANDCEVLTTLTPDTGR Unmodified 3270.615 0.61503292 1232 P55036;P55036-2 PSMD4 26S proteasome non-ATPase regulatory subunit 4 yes no 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 73.888 73.814 3 7.1408E-69 23616 20211116_3445_TMUAki_TMT10x_S_F6 218.94 209.48 376770 616990 6855.1 552130 569990 405040 473480 338710 334130 306360 450730 350860 575470 40332 565650 544520 420210 481000 346750 350160 300540 431190 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 376770 616990 6855.1 552130 569990 405040 473480 338710 334130 306360 450730 350860 575470 40332 565650 544520 420210 481000 346750 350160 300540 431190 1 1 1 1 1 1 1 1 1 1 1 513170000 0 513170000 19428 1232 17845 98930;98931 119763;119764 119764 2 TRSQEQEVLER Unmodified 1373.6899 0.68990583 3160 Q9UKV3;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 0 0 0 1 By MS/MS By matching 2 0.816 1 1 1 2 1 28.13 27.96 3 2.1516E-08 6786 20211116_3429_TMUAki_TMT10x_P_F2 149.58 112.74 165660 263250 4933.7 251380 268850 314980 198250 141980 190170 146690 204760 154280 245600 19778 258230 256310 313070 204540 153230 194330 143070 197070 2 2 2 2 2 2 2 2 2 2 2 165660 263250 4933.7 251380 268850 314980 198250 141980 190170 146690 204760 154280 245600 19778 258230 256310 313070 204540 153230 194330 143070 197070 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11277000 10277000 999770 19429 3160 17846 98932;98933;98934 119765;119766 119766 2 TRTEELIVQTK Unmodified 1316.73 0.72997974 2732 Q9BYT8 NLN Neurolysin, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 37.727 37.767 3 1.0372E-05 9986 20211116_3433_TMUAki_TMT10x_P_F5 111.31 82.357 7002100 11101000 322540 11006000 10224000 11616000 8179000 7676300 7808500 6876500 9106600 6522000 10358000 926240 11244000 9771500 11707000 8391700 7979600 8006100 6748900 8744600 4 4 4 4 4 4 4 4 4 4 4 4994500 7871300 247590 7878400 8227400 10069000 6117900 5762000 5742800 4995800 6722600 4652200 7344800 690100 8069600 7850700 10026000 6304300 6052800 5893500 4910700 6454700 3 3 3 3 3 3 3 3 3 3 3 2007600 3229500 74956 3127400 1996700 1546400 2061100 1914300 2065700 1880700 2384100 1869800 3013100 236150 3174000 1920700 1681100 2087400 1926800 2112600 1838100 2290000 1 1 1 1 1 1 1 1 1 1 1 488000000 250290000 237710000 19430 2732 17847 98935;98936;98937 119767;119768;119769;119770 119767 4 TRTFNTSTGGLLLPSDTK Unmodified 1907.9953 0.99525556 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 51.397 51.227 3 2.0291E-23 14508 20211116_3428_TMUAki_TMT10x_P_F1 163.56 145.2 12005000 19121000 48881 25589000 17924000 15753000 11800000 11159000 13646000 11258000 14426000 11177000 17866000 1035800 25501000 17030000 16552000 12347000 11581000 13830000 10991000 13892000 6 6 3 6 6 6 6 6 6 6 6 7604900 11694000 34709 15879000 14303000 13232000 9343200 6808600 8167500 6925700 8524700 7080500 10928000 679080 15864000 13587000 13499000 9700100 7250200 8373200 6759200 8212400 3 3 2 3 3 3 3 3 3 3 3 4399800 7426800 14172 9710200 3621300 2521300 2456800 4350500 5478800 4332500 5901200 4096600 6938500 356750 9637300 3443200 3053000 2646500 4330400 5456500 4232100 5679600 3 3 1 3 3 3 3 3 3 3 3 2057400000 1574100000 483280000 19431 647 17848 98938;98939;98940;98941 119771;119772;119773;119774;119775;119776 119771 6 TRTFNTSTGGLLLPSDTKR Unmodified 2064.0964 0.096366586 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 2 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 43.807 43.754 4 3.5841E-24 11829 20211116_3431_TMUAki_TMT10x_P_F4 176.48 148.51 7336400 12562000 30478 13614000 12802000 12511000 7663200 15106000 15675000 11641000 12390000 6831000 11726000 696860 13798000 12147000 12872000 8289900 15124000 15479000 11512000 12054000 5 5 3 5 5 5 5 5 5 5 5 3534600 5626400 1159.6 6053100 8308600 9560100 5453000 6745800 7013500 5249400 5596600 3291000 5251600 351200 6197500 7894300 9459600 5728800 6955900 7016500 5188500 5442700 3 3 2 3 3 3 3 3 3 3 3 3801800 6935500 29318 7561300 4493600 2951000 2210200 8360600 8661200 6391900 6793300 3540000 6473900 345650 7600600 4252600 3412200 2561000 8168600 8462700 6323800 6611100 2 2 1 2 2 2 2 2 2 2 2 3093600000 2178500000 915080000 19432 647 17849 98942;98943;98944;98945;98946 119777;119778;119779;119780;119781 119779 5 TRTPASINATPANINLADLTR Unmodified 2209.1815 0.1814932 2047 Q7KZ85;Q7KZ85-2 SUPT6H Transcription elongation factor SPT6 yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 55.721 55.552 3 2.7863E-19 16589 20211116_3440_TMUAki_TMT10x_S_F2 149.93 139.59 7299800 12904000 126780 12497000 9786300 12260000 9187000 9167500 8812700 8719700 10111000 6797800 12039000 758190 12774000 9376200 12435000 9338500 9463500 9027900 8534600 9713200 4 4 4 4 4 4 4 4 4 4 4 4012800 6785500 40831 6443100 6224500 9333900 6539400 4721400 4627200 4358400 5348800 3736600 6330300 401720 6640400 5978700 9226800 6557500 5022300 4816700 4271600 5137500 2 2 2 2 2 2 2 2 2 2 2 3287000 6118200 85951 6053400 3561800 2926000 2647600 4446100 4185500 4361300 4761800 3061200 5708700 356470 6133300 3397500 3207800 2781000 4441200 4211200 4263000 4575700 2 2 2 2 2 2 2 2 2 2 2 1260400000 406300000 854120000 19433 2047 17850 98947;98948;98949 119782;119783;119784;119785 119785 4 TRTSQEELLAEVVQGQSR Unmodified 2030.0392 0.039245638 2011 Q6PJT7;Q6PJT7-5;Q6PJT7-2;Q6PJT7-9;Q6PJT7-4;Q6PJT7-3;Q6PJT7-10;Q6PJT7-11 ZC3H14 Zinc finger CCCH domain-containing protein 14 yes no 0 0 0 1 By matching By MS/MS 4.33 0.471 2 1 1 2 53.128 53.235 3 0.017559 14866 20211116_3444_TMUAki_TMT10x_S_F5 47.392 29.692 1712300 3247500 59527 3490200 1778400 1799100 1489800 2489700 2485400 2594100 2539600 1594800 3031200 198370 3518100 1701600 1952600 1557100 2499600 2486800 2529300 2448200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1712300 3247500 59527 3490200 1778400 1799100 1489800 2489700 2485400 2594100 2539600 1594800 3031200 198370 3518100 1701600 1952600 1557100 2499600 2486800 2529300 2448200 1 1 1 1 1 1 1 1 1 1 1 502880000 253700000 249180000 19434 2011 17851 98950;98951;98952 119786;119787 119787 2 TRVIWGK Unmodified 858.50757 0.50757178 714 P18077 RPL35A 60S ribosomal protein L35a yes yes 0 0 0 1 By MS/MS By MS/MS 3.33 1.25 1 1 1 2 1 27.509 27.311 3 0.10298 6438 20211116_3429_TMUAki_TMT10x_P_F2 38.322 13.648 1771100 2788300 17326 2936300 2517300 2168500 2160700 824580 644560 910520 1818600 1649200 2602300 169120 2973600 2405500 2226300 2163400 908770 763740 885720 1718000 3 3 1 3 3 3 3 3 3 3 3 1436800 2248100 17326 2414100 2097100 1860500 1792500 632160 474280 698660 1408400 1337900 2098300 143990 2442800 2004100 1901900 1793400 706720 573330 679610 1329800 2 2 1 2 2 2 2 2 2 2 2 334330 540240 0 522130 420260 308060 368120 192420 170290 211850 410150 311260 504040 25124 530740 401410 324430 370000 202050 190410 206110 388230 1 1 0 1 1 1 1 1 1 1 1 322440000 308080000 14363000 19435 714 17852 98953;98954;98955 119788;119789 119788 2 TSAALSTVGSAISR Unmodified 1319.7045 0.70449327 214 O43399;O43399-2;O43399-4;O43399-3;O43399-5;O43399-7;O43399-6 TPD52L2 Tumor protein D54 yes no 0 0 0 0 By MS/MS By MS/MS 5.25 3.31 3 1 4 3 5 47.181 47.124 2;3 1.4066E-60 12791 20211116_3428_TMUAki_TMT10x_P_F1 308.12 239.28 8625900 13818000 75633 16288000 16206000 17303000 10167000 14633000 14963000 12329000 13998000 8031300 12903000 783440 16458000 15385000 17504000 10777000 14943000 14978000 12136000 13533000 7 7 4 7 7 7 7 7 7 7 7 4955200 7654200 55805 9143300 13141000 14134000 7508100 8538000 8566100 7130800 8163100 4613500 7147700 486160 9297200 12456000 13965000 7943000 8921200 8653900 7022300 7887100 3 3 1 3 3 3 3 3 3 3 3 3670700 6163500 19828 7145100 3064600 3168700 2659000 6094800 6396900 5198000 5834500 3417800 5754900 297280 7160400 2928400 3539100 2834100 6022200 6324200 5113600 5645700 4 4 3 4 4 4 4 4 4 4 4 2660400000 1422300000 1238100000 19436 214 17853 98956;98957;98958;98959;98960;98961;98962;98963 119790;119791;119792;119793;119794;119795;119796;119797 119790 8 TSACGLFSVCYPR Unmodified 1516.6803 0.68026913 869;870 P30153;P30154;P30154-2;P30154-4;P30154-3 PPP2R1A;PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform no no 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 4 2 2 4 58.725 58.427 2;3 4.4065E-25 17761 20211116_3440_TMUAki_TMT10x_S_F2 222.34 197.51 22736000 40062000 249930 36475000 28904000 32232000 24689000 34079000 29755000 29994000 31487000 21170000 37368000 1977900 37400000 27609000 33139000 25421000 34434000 30110000 29462000 30321000 7 7 4 7 7 7 7 7 7 7 7 8028500 12811000 0 12121000 10521000 16510000 10176000 9686700 8510800 8871300 9963400 7473500 11951000 478790 12480000 10065000 16395000 10288000 10169000 8782700 8697800 9566300 2 2 0 2 2 2 2 2 2 2 2 14708000 27251000 249930 24353000 18383000 15722000 14513000 24392000 21244000 21123000 21523000 13696000 25417000 1499100 24920000 17544000 16743000 15132000 24265000 21328000 20765000 20754000 5 5 4 5 5 5 5 5 5 5 5 3263000000 1721100000 1541900000 19437 869;870 17854 98964;98965;98966;98967;98968;98969 119798;119799;119800;119801;119802;119803;119804 119802 7 TSALENYINR Acetyl (Protein N-term) 1221.599 0.59896556 443 O95777 LSM8 U6 snRNA-associated Sm-like protein LSm8 yes yes 1 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 62.856 62.519 2 3.7692E-09 19418 20211116_3440_TMUAki_TMT10x_S_F2 106.38 82.825 19747000 30212000 0 29868000 25660000 27024000 26267000 21115000 18783000 19734000 23811000 18386000 28189000 1600500 30452000 24611000 27573000 26381000 21725000 19614000 19330000 22814000 3 3 0 3 3 3 3 3 3 3 3 11571000 17651000 0 17312000 14072000 18745000 15887000 11945000 11075000 11399000 14168000 10773000 16469000 881080 17707000 13531000 18855000 15871000 12472000 11587000 11156000 13572000 2 2 0 2 2 2 2 2 2 2 2 8176000 12561000 0 12555000 11587000 8279100 10380000 9170200 7707400 8334600 9642900 7612600 11721000 719390 12745000 11080000 8718000 10509000 9253600 8026600 8174400 9242300 1 1 0 1 1 1 1 1 1 1 1 1014800000 676900000 337920000 19438 443 17855 98970;98971;98972;98973 119805;119806;119807;119808 119807 4 TSAPPQVFSITEHSPLSK Unmodified 1924.9894 0.9894419 2239 Q8NDH2 CCDC168 Coiled-coil domain-containing protein 168 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 66.337 66.028 3 0.10064 22683 20211116_3430_TMUAki_TMT10x_P_F3 23.799 5.697 21144000 31416000 113560 28087000 21709000 21410000 23665000 15645000 13429000 14594000 26490000 19687000 29302000 1730600 28789000 20862000 22093000 23585000 16166000 14573000 14296000 25149000 4 4 2 4 4 4 4 4 4 4 4 9495300 11188000 0 10836000 7758100 8882300 9568400 4888300 3708900 4440200 11855000 8840100 10438000 642800 11050000 7476500 9079400 9429600 5158200 4318600 4355000 11184000 1 1 0 1 1 1 1 1 1 1 1 11648000 20229000 113560 17251000 13951000 12528000 14096000 10757000 9720600 10154000 14634000 10847000 18864000 1087800 17739000 13386000 13014000 14155000 11008000 10255000 9941500 13965000 3 3 2 3 3 3 3 3 3 3 3 3376900000 769330000 2607600000 19439 2239 17856 98974;98975;98976 119809 119809 1 TSAQVVLDGLVDK Unmodified 1343.7296 0.72964538 1672 Q14008;Q14008-2;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 68.874 68.929 2;3 1.552E-09 21651 20211116_3445_TMUAki_TMT10x_S_F6 125.61 88.5 8371300 14326000 77579 14895000 9651600 10810000 9186200 8221400 8383700 8647600 10561000 7795100 13370000 784270 15094000 9247400 11206000 9317500 8502400 8641400 8428100 10121000 3 3 3 3 3 3 3 3 3 3 3 2995600 5201200 33028 5182000 3923900 5803300 3686000 2881400 2925700 3073800 3673100 2789400 4853200 292140 5297100 3758400 5808100 3727800 3082900 3036200 2994100 3520200 1 1 1 1 1 1 1 1 1 1 1 5375800 9125200 44551 9713300 5727800 5006800 5500200 5340000 5458000 5573800 6888200 5005700 8517000 492140 9797200 5489000 5398400 5589700 5419500 5605200 5434100 6600500 2 2 2 2 2 2 2 2 2 2 2 584130000 244840000 339290000 19440 1672 17857 98977;98978;98979 119810;119811;119812;119813 119813 4 TSASIILR Unmodified 859.51272 0.51271674 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 By MS/MS By MS/MS 5 2.61 2 2 2 2 2 5 5 39.189 39.339 2 0.00041809 11118 20211116_3435_TMUAki_TMT10x_P_F7 143.61 103.95 22225000 34683000 49121 32910000 32725000 32697000 26334000 28397000 25429000 26102000 29642000 20692000 32357000 1771800 33696000 31203000 33226000 27018000 29021000 26059000 25588000 28464000 14 14 7 14 14 14 14 14 14 14 14 9719200 14924000 30298 14121000 18071000 20227000 11642000 14288000 12171000 12355000 13227000 9048800 13923000 832940 14554000 17160000 20096000 12162000 14769000 12396000 12146000 12727000 5 5 2 5 5 5 5 5 5 5 5 12506000 19759000 18823 18789000 14654000 12470000 14692000 14109000 13258000 13748000 16415000 11643000 18434000 938840 19142000 14043000 13131000 14856000 14252000 13662000 13442000 15737000 9 9 5 9 9 9 9 9 9 9 9 3707800000 1756900000 1951000000 19441 712 17858 98980;98981;98982;98983;98984;98985;98986;98987;98988;98989 119814;119815;119816;119817;119818;119819;119820;119821;119822;119823;119824;119825;119826;119827 119816 14 TSATVGPK Unmodified 759.41267 0.41266834 690 P16104 H2AFX Histone H2AX yes yes 0 0 0 0 By MS/MS 5 0 1 1 30.66 30.596 2 0.0025934 6939 20211116_3433_TMUAki_TMT10x_P_F5 107.66 73.587 581990 975580 29446 856220 781130 959200 623120 479630 507320 480390 696690 542110 909880 78482 883460 746800 960040 636730 511880 527900 469140 666210 1 1 1 1 1 1 1 1 1 1 1 581990 975580 29446 856220 781130 959200 623120 479630 507320 480390 696690 542110 909880 78482 883460 746800 960040 636730 511880 527900 469140 666210 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25707000 25707000 0 19442 690 17859 98990 119828 119828 1 TSCALTIHAIGR Unmodified 1298.6765 0.67650438 1953 Q5VYK3 ECM29 Proteasome-associated protein ECM29 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 2 4 3 3 36.498 36.662 3 4.8066E-06 8961 20211116_3428_TMUAki_TMT10x_P_F1 106.79 90.153 1059800 1796300 7186.3 1866400 1986200 1805100 1174000 1627100 1584000 1260700 1646500 986730 1676400 96000 1898200 1883700 1838700 1246000 1652400 1595700 1246300 1586400 3 3 1 3 3 3 3 3 3 3 3 478590 873310 7186.3 916540 1415000 1308900 663710 728360 761750 657810 804410 445670 815050 59490 937830 1338300 1296200 715550 767740 772170 645360 774670 1 1 1 1 1 1 1 1 1 1 1 581200 922950 0 949880 571250 496170 510300 898780 822280 602840 842120 541060 861310 36510 960340 545460 542500 530460 884640 823580 600960 811740 2 2 0 2 2 2 2 2 2 2 2 240770000 137510000 103260000 19443 1953 17860 98991;98992;98993;98994;98995;98996 119829;119830;119831;119832;119833;119834 119829 6 TSDANETEDHLESLICK Unmodified 1960.8684 0.86840006 1554 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 1 1 1 1 2 2 58.073 57.866 3 6.3187E-36 20345 20211116_3441_TMUAki_TMT10x_S_F3 203.9 185.31 17195000 29635000 135140 30087000 22774000 32821000 19813000 20622000 21872000 21182000 23410000 16011000 27654000 1512000 30702000 21763000 32993000 20316000 21600000 22215000 20664000 22535000 7 7 4 7 7 7 7 7 7 7 7 10783000 17812000 91551 18249000 16396000 26839000 14726000 12841000 13625000 13375000 14438000 10040000 16622000 985490 18715000 15680000 26498000 14991000 13778000 13938000 13041000 13903000 4 4 2 4 4 4 4 4 4 4 4 6412400 11823000 43588 11838000 6378400 5982000 5086800 7781300 8247100 7806300 8971300 5970500 11032000 526500 11988000 6083100 6495700 5325200 7821500 8277400 7623000 8631800 3 3 2 3 3 3 3 3 3 3 3 1549900000 985180000 564730000 19444 1554 17861 98997;98998;98999;99000 119835;119836;119837;119838;119839;119840;119841 119840 7 TSDFNTFLAQEGCTK Unmodified 1717.7618 0.76175015 3117 Q9UHD1;Q9UHD1-2 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.11 0.737 2 4 3 4 5 62.482 62.53 2;3 2.5783E-33 19010 20211116_3445_TMUAki_TMT10x_S_F6 226.85 202 54254000 91653000 819660 96443000 58270000 76774000 58389000 63441000 58604000 61142000 72434000 50521000 85540000 5272700 97755000 55922000 79126000 59227000 65107000 60100000 59809000 69446000 14 14 11 14 14 14 14 14 14 14 14 24141000 38963000 461010 40836000 32925000 49949000 32670000 26745000 24954000 27129000 32013000 22481000 36363000 2551000 41664000 31591000 49801000 32913000 28375000 25974000 26480000 30663000 6 6 5 6 6 6 6 6 6 6 6 30112000 52691000 358650 55607000 25346000 26825000 25720000 36696000 33650000 34012000 40421000 28040000 49177000 2721700 56092000 24331000 29325000 26315000 36731000 34126000 33329000 38783000 8 8 6 8 8 8 8 8 8 8 8 7295400000 3824900000 3470500000 19445 3117 17862 99001;99002;99003;99004;99005;99006;99007;99008;99009 119842;119843;119844;119845;119846;119847;119848;119849;119850;119851;119852;119853;119854;119855 119855 14 TSDIFGSPVTATSR Unmodified 1437.71 0.70997257 2834 Q9H910;Q9H910-3;Q9H910-2 HN1L Hematological and neurological expressed 1-like protein yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 49.919 50.107 2;3 6.9875E-19 13581 20211116_3444_TMUAki_TMT10x_S_F5 171.6 140.21 6097600 10538000 118800 11398000 9796200 12122000 7100500 10326000 11092000 9202600 9864500 5678200 9836500 647720 11578000 9331200 12264000 7466900 10556000 11066000 9034000 9553900 3 3 2 3 3 3 3 3 3 3 3 3505400 5946000 114880 6127100 7635500 10079000 5512100 5706900 6218800 5192600 5522200 3264600 5548900 435210 6296900 7273600 9925700 5724100 6007700 6270900 5092500 5348700 2 2 1 2 2 2 2 2 2 2 2 2592200 4592300 3913.3 5271000 2160700 2043000 1588400 4619000 4872800 4010000 4342300 2413600 4287600 212510 5281100 2057600 2338300 1742800 4548100 4794700 3941500 4205200 1 1 1 1 1 1 1 1 1 1 1 617380000 345140000 272250000 19446 2834 17863 99010;99011;99012 119856;119857;119858;119859 119859 4 TSDLIVLGLPWK Unmodified 1340.7704 0.77038799 1600 Q13148 TARDBP TAR DNA-binding protein 43 yes yes 0 0 0 0 By MS/MS By MS/MS 3.83 2.97 1 3 2 3 3 79.738 79.727 2;3 2.8904E-16 26349 20211116_3440_TMUAki_TMT10x_S_F2 199.46 167.24 46240000 75666000 134830 71587000 54801000 54763000 64887000 20672000 15728000 26447000 49549000 43049000 70589000 3281300 73067000 52756000 56060000 63769000 22911000 19352000 25592000 46751000 4 4 1 4 4 4 4 4 4 4 4 27068000 43413000 0 40846000 29557000 38271000 40175000 12472000 9111200 15212000 27970000 25198000 40499000 1709600 41812000 28571000 38567000 39234000 14065000 11298000 14744000 26398000 2 2 0 2 2 2 2 2 2 2 2 19172000 32253000 134830 30741000 25244000 16492000 24712000 8200400 6617300 11235000 21579000 17850000 30090000 1571700 31255000 24185000 17494000 24534000 8846900 8054600 10848000 20353000 2 2 1 2 2 2 2 2 2 2 2 6416400000 2786200000 3630300000 19447 1600 17864 99013;99014;99015;99016;99017;99018 119860;119861;119862;119863 119862 4 TSEIYVHR Unmodified 1003.5087 0.50869399 2756 Q9GZR7;Q9GZR7-2 DDX24 ATP-dependent RNA helicase DDX24 yes no 0 0 0 0 By MS/MS 3 0 1 1 29.722 29.459 3 0.03181 8871 20211116_3441_TMUAki_TMT10x_S_F3 51.346 25.787 287430 474360 5445.2 448490 346060 308410 368910 306550 338710 311230 420340 267670 442530 29726 457270 332720 322790 372080 311920 348790 303770 402960 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 287430 474360 5445.2 448490 346060 308410 368910 306550 338710 311230 420340 267670 442530 29726 457270 332720 322790 372080 311920 348790 303770 402960 1 1 1 1 1 1 1 1 1 1 1 3829000 0 3829000 19448 2756 17865 99019 119864 119864 1 TSESTGSLPSPFLR Unmodified 1477.7413 0.7412727 432 O95456;O95456-2 PSMG1 Proteasome assembly chaperone 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.4 0.49 3 2 2 3 53.882 54.119 2;3 1.6034E-44 15111 20211116_3434_TMUAki_TMT10x_P_F6 276.58 228.3 4791200 8352700 3329.9 9244800 6664800 7137800 4726600 6706900 6665900 6115500 7066200 4461000 7797300 407110 9336700 6340800 7391800 4955800 6823200 6710800 5997100 6804100 2 2 1 2 2 2 2 2 2 2 2 2134700 3370700 0 3557500 4126400 4876900 2821000 2795900 2648000 2501100 2707400 1987500 3145900 185420 3635800 3922500 4840100 2924400 2938900 2703600 2454800 2609900 1 1 0 1 1 1 1 1 1 1 1 2656500 4982000 3329.9 5687300 2538400 2260900 1905600 3911000 4017900 3614400 4358800 2473500 4651400 221690 5700900 2418200 2551700 2031400 3884300 4007200 3542200 4194200 1 1 1 1 1 1 1 1 1 1 1 1037700000 347160000 690510000 19449 432 17866 99020;99021;99022;99023;99024 119865;119866;119867;119868 119865 4 TSFFQALGITTK Unmodified 1312.7027 0.70270235 508 P05388;P05388-2;Q8NHW5 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 0 0 0 0 By MS/MS By MS/MS 5.33 1.26 2 4 6 21 16 12 22 39 56.802 56.835 2;3 1.6031E-60 26171 20211116_3442_TMUAki_TMT10x_S_F4 331.8 296.18 300590000 508120000 2608900 440370000 325190000 458590000 305500000 323440000 260510000 303070000 361970000 279880000 473870000 25511000 454300000 311330000 463020000 309520000 335060000 270590000 296840000 346040000 37 37 22 37 37 37 37 37 37 37 37 141070000 236520000 1689500 205810000 131560000 292450000 129740000 158480000 107820000 146140000 169720000 131360000 220580000 12891000 213430000 126190000 289570000 131020000 167530000 112850000 143240000 161810000 12 12 9 12 12 12 12 12 12 12 12 159520000 271600000 919460 234550000 193630000 166150000 175760000 164960000 152690000 156930000 192250000 148520000 253290000 12620000 240870000 185140000 173450000 178500000 167540000 157750000 153590000 184230000 25 25 13 25 25 25 25 25 25 25 25 57388000000 30779000000 26609000000 19450 508 17867 99025;99026;99027;99028;99029;99030;99031;99032;99033;99034;99035;99036;99037;99038;99039;99040;99041;99042;99043;99044;99045;99046;99047;99048;99049;99050;99051;99052;99053;99054;99055;99056;99057;99058;99059;99060;99061;99062;99063;99064;99065;99066;99067;99068;99069;99070;99071;99072;99073;99074;99075;99076;99077;99078;99079;99080;99081;99082;99083;99084;99085 119869;119870;119871;119872;119873;119874;119875;119876;119877;119878;119879;119880;119881;119882;119883;119884;119885;119886;119887;119888;119889;119890;119891;119892;119893;119894;119895;119896;119897;119898;119899;119900;119901;119902;119903;119904;119905;119906;119907;119908;119909;119910;119911;119912;119913;119914;119915;119916;119917;119918;119919;119920;119921;119922;119923;119924;119925;119926;119927;119928;119929;119930;119931;119932 119895 64 TSFLDDAFRK Unmodified 1198.5982 0.59823728 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 56.131 56.472 3 1.9035E-08 17878 20211116_3435_TMUAki_TMT10x_P_F7 162.38 118.87 53635000 91461000 3064000 93153000 80819000 95502000 69440000 83112000 67106000 84444000 83848000 49963000 85349000 7675800 94947000 77392000 96868000 70959000 85168000 68965000 82417000 80367000 4 4 3 4 4 4 4 4 4 4 4 17538000 28364000 400210 34252000 37223000 48619000 27031000 27965000 28937000 26784000 29066000 16332000 26488000 2095500 34742000 35459000 48179000 28010000 29440000 29360000 26208000 28035000 2 2 1 2 2 2 2 2 2 2 2 36098000 63097000 2663800 58901000 43595000 46883000 42409000 55147000 38169000 57659000 54783000 33630000 58860000 5580300 60206000 41933000 48688000 42948000 55728000 39606000 56210000 52333000 2 2 2 2 2 2 2 2 2 2 2 3041300000 1629500000 1411800000 19451 1695 17868 99086;99087;99088;99089 119933;119934;119935;119936 119933 4 TSFTPVGDVFELNFMNVK Unmodified 2043.9976 0.99756374 495 P04844;P04844-2 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.8 3.43 3 2 3 2 80.576 80.567 3 1.2691E-23 26622 20211116_3436_TMUAki_TMT10x_P_F8 165.34 152.98 13624000 21281000 38330 20681000 15210000 13763000 15577000 4995700 3987100 6059000 13872000 12684000 19855000 655930 21037000 14582000 14250000 15422000 5553500 4914100 5873800 13076000 4 4 1 4 4 4 4 4 4 4 4 5929400 8263200 0 7926800 5536200 6868000 5521300 1279400 881640 2126200 5486000 5519400 7709200 299290 8094500 5295800 6936400 5457600 1608200 1263300 2041700 5149600 1 1 0 1 1 1 1 1 1 1 1 7695100 13018000 38330 12754000 9673700 6894700 10056000 3716200 3105400 3932800 8386300 7165000 12146000 356650 12943000 9286200 7313900 9964800 3945300 3650800 3832100 7926500 3 3 1 3 3 3 3 3 3 3 3 3204500000 1791700000 1412800000 19452 495 17869 99090;99091;99092;99093;99094 119937;119938;119939;119940;119941 119938 5 TSFTPVGDVFELNFMNVK Oxidation (M) 2059.9925 0.99247837 495 P04844;P04844-2 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 0 0 1 0 By MS/MS By MS/MS 7.67 0.471 2 4 3 3 79.317 79.323 2;3 4.1573E-08 27982 20211116_3446_TMUAki_TMT10x_S_F7 103.61 93.412 18262000 32072000 190340 25579000 24711000 31528000 26970000 24497000 23955000 24984000 26203000 17005000 29902000 1640100 26642000 23761000 31594000 27145000 25277000 24582000 24380000 25208000 5 5 2 5 5 5 5 5 5 5 5 6925700 11350000 56016 9409900 6459600 13045000 7880900 8580600 8612300 8664800 9214400 6449000 10584000 493710 9791000 6232900 12964000 7942300 8951900 8750900 8459000 8870100 2 2 1 2 2 2 2 2 2 2 2 11337000 20722000 134330 16169000 18251000 18483000 19089000 15917000 15342000 16319000 16989000 10556000 19319000 1146400 16851000 17528000 18629000 19203000 16325000 15831000 15921000 16338000 3 3 1 3 3 3 3 3 3 3 3 7708300000 3599600000 4108700000 19453 495 17869 99095;99096;99097;99098;99099;99100 119942;119943;119944;119945;119946 119944 398 5 TSFVNFTDICK Unmodified 1330.6227 0.62273747 738 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 65.933 66.522 2 1.7298E-15 20348 20211116_3447_TMUAki_TMT10x_S_F8 180.97 152.57 3148500 5339300 0 5379800 5267100 8247400 4743500 4495100 3058100 3937600 4531100 2931500 4982300 288920 5528300 5037100 8140700 4786700 4743000 3237200 3868700 4325400 1 1 0 1 1 1 1 1 1 1 1 3148500 5339300 0 5379800 5267100 8247400 4743500 4495100 3058100 3937600 4531100 2931500 4982300 288920 5528300 5037100 8140700 4786700 4743000 3237200 3868700 4325400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 663610000 663610000 0 19454 738 17870 99101;99102;99103 119947;119948;119949 119949 3 TSGNVEDDLIIFPDDCEFK Unmodified 2212.9834 0.98342982 1839 Q16186 ADRM1 Proteasomal ubiquitin receptor ADRM1 yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.943 2 1 2 1 60.927 60.91 3 9.2357E-09 27528 20211116_3439_TMUAki_TMT10x_S_F1 114.55 100.92 9713700 17071000 4946.1 15207000 10423000 13795000 11171000 8586600 8121100 8744800 11625000 9042400 15923000 574630 15624000 9996800 14023000 11198000 8997800 8519600 8534100 11106000 3 3 1 3 3 3 3 3 3 3 3 5347700 9095700 4946.1 7785900 4778200 8966900 5695200 4607100 4434000 4695500 6078800 4977800 8482400 255710 8053100 4592900 8964000 5689900 4906800 4624400 4582200 5813000 2 2 1 2 2 2 2 2 2 2 2 4365900 7975800 0 7421000 5644400 4827900 5476000 3979500 3687100 4049300 5546300 4064600 7440200 318920 7571100 5403900 5059300 5508000 4091000 3895200 3951900 5292700 1 1 0 1 1 1 1 1 1 1 1 2202400000 1202800000 999640000 19455 1839 17871 99104;99105;99106 119950;119951;119952 119952 3 TSGNVEDDLIIFPDDCEFKR Unmodified 2369.0845 0.084540851 1839 Q16186 ADRM1 Proteasomal ubiquitin receptor ADRM1 yes yes 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 70.59 70.374 3 2.53E-09 24330 20211116_3439_TMUAki_TMT10x_S_F1 116.73 86.962 6747900 12768000 119110 9589800 8182800 14081000 9685500 9730800 8677000 9469600 10028000 6283500 11902000 649940 10075000 7888400 13970000 9714600 10105000 8919400 9259300 9631600 3 3 2 3 3 3 3 3 3 3 3 4972200 9009900 75509 6588400 5123300 11424000 7109300 6761500 6055100 6590000 7064200 4629900 8398100 444110 6964600 4964400 11235000 7074700 7104800 6242000 6443200 6783400 2 2 1 2 2 2 2 2 2 2 2 1775600 3757700 43599 3001500 3059500 2657800 2576300 2969300 2621900 2879600 2963600 1653600 3503500 205830 3110300 2924000 2735800 2639900 3000600 2677500 2816100 2848300 1 1 1 1 1 1 1 1 1 1 1 980430000 561640000 418780000 19456 1839 17872 99107;99108 119953;119954;119955 119955 3 TSGSVYITLK Unmodified 1067.5863 0.58627561 962 P37108 SRP14 Signal recognition particle 14 kDa protein yes yes 0 0 0 0 By MS/MS By MS/MS 4 2.91 2 2 2 3 5 4 52.235 52.101 2;3 9.5628E-11 14855 20211116_3428_TMUAki_TMT10x_P_F1 200.6 131.18 31119000 53107000 123280 51245000 40280000 47044000 34160000 38097000 35492000 35415000 40746000 28975000 49548000 2724600 52347000 38469000 47983000 35011000 39105000 36235000 34699000 39144000 8 8 3 8 8 8 8 8 8 8 8 15438000 25696000 68600 24649000 22294000 31240000 18256000 18413000 17702000 17835000 19646000 14375000 23973000 1439300 25319000 21279000 31131000 18712000 19351000 18102000 17442000 18892000 3 3 2 3 3 3 3 3 3 3 3 15681000 27411000 54675 26596000 17986000 15803000 15904000 19684000 17790000 17581000 21099000 14600000 25575000 1285300 27028000 17190000 16852000 16299000 19754000 18133000 17257000 20251000 5 5 1 5 5 5 5 5 5 5 5 3270000000 2026100000 1243900000 19457 962 17873 99109;99110;99111;99112;99113;99114;99115;99116;99117 119956;119957;119958;119959;119960;119961;119962;119963;119964;119965 119956 10 TSGSVYITLKK Unmodified 1195.6812 0.68123863 962 P37108 SRP14 Signal recognition particle 14 kDa protein yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 46.772 46.71 3 1.5428E-11 12947 20211116_3440_TMUAki_TMT10x_S_F2 127.56 104.24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19458 962 17874 99118;99119;99120;99121;99122;99123 119966;119967;119968;119969;119970;119971 119969 6 TSGTEPADFALPSSR Unmodified 1534.7264 0.72635092 1573 Q12888;Q12888-3;Q12888-2 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 0 0 By MS/MS 4 0 1 1 47.415 47.589 2 4.2759E-32 13811 20211116_3442_TMUAki_TMT10x_S_F4 190.68 173.35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19459 1573 17875 99124 119972 119972 1 TSGTLISFIYPAQNPELLNK Unmodified 2205.1681 0.16813455 1630 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 79 78.973 3 2.3861E-32 27325 20211116_3429_TMUAki_TMT10x_P_F2 190.24 170.92 13186000 20251000 75327 20394000 15233000 16601000 15664000 11667000 11787000 13094000 15077000 12277000 18897000 1075300 20738000 14614000 17036000 15746000 12154000 12278000 12729000 14442000 4 4 1 4 4 4 4 4 4 4 4 3366200 5179800 0 5094400 2632500 5801200 3214800 2941900 3072000 3325600 3509200 3134000 4833000 233540 5213800 2536500 5802100 3226100 3146900 3147000 3232100 3371700 1 1 0 1 1 1 1 1 1 1 1 9819800 15071000 75327 15299000 12601000 10800000 12449000 8725500 8715300 9768000 11567000 9143200 14064000 841710 15524000 12078000 11233000 12520000 9007400 9130900 9496900 11070000 3 3 1 3 3 3 3 3 3 3 3 2808300000 1463500000 1344800000 19460 1630 17876 99125;99126 119973;119974;119975;119976 119973 4 TSGVPGNRPGSVIR Unmodified 1395.7583 0.75826017 261 O60271;O60271-2;O60271-9;O60271-4 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 yes no 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 29.872 29.765 3 7.2399E-14 7444 20211116_3429_TMUAki_TMT10x_P_F2 147.23 116.08 395900 660460 2508 687310 831390 846310 582380 494960 568120 403420 603600 368590 616380 35985 701650 790720 844460 603310 518240 579850 397780 581170 3 3 1 3 3 3 3 3 3 3 3 277850 466210 2508 479080 721970 706720 444750 366010 410980 288900 426640 258700 435070 28610 491240 685240 698260 464580 387020 420130 285340 411080 2 2 1 2 2 2 2 2 2 2 2 118040 194260 0 208230 109420 139590 137630 128960 157140 114520 176960 109890 181320 7375 210410 105480 146200 138730 131220 159710 112440 170090 1 1 0 1 1 1 1 1 1 1 1 43528000 32126000 11403000 19461 261 17877 99127;99128;99129;99130 119977;119978;119979 119978 3 TSGVPSGFNFTAPPVLGK Unmodified 1774.9254 0.92538508 941 P35658;P35658-3;P35658-4;P35658-2;P35658-5 NUP214 Nuclear pore complex protein Nup214 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 74.414 74.197 3 2.7521E-06 27048 20211116_3441_TMUAki_TMT10x_S_F3 95.767 82.566 7623900 13891000 74436 12390000 8495600 11663000 9790300 8843500 8489900 8668000 9959500 7098600 12956000 641670 12735000 8178300 11863000 9822700 9128500 8746000 8472800 9562000 2 2 1 2 2 2 2 2 2 2 2 3489200 6018500 74436 4850700 3658700 6965300 4624300 3682100 3203400 3894800 4461200 3249400 5611500 361030 5062600 3536900 6891600 4596200 3915800 3365700 3795100 4264600 1 1 1 1 1 1 1 1 1 1 1 4134700 7872300 0 7539000 4836900 4697600 5165900 5161500 5286500 4773200 5498300 3849200 7344500 280640 7672100 4641400 4971300 5226500 5212800 5380300 4677700 5297400 1 1 0 1 1 1 1 1 1 1 1 1149200000 451730000 697520000 19462 941 17878 99131;99132 119980;119981 119981 2 TSGVVTSCTGVLPQLSMVK Oxidation (M) 1979.0067 0.0067482219 1114 P49736 MCM2 DNA replication licensing factor MCM2 yes yes 0 0 1 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 63.386 63.189 3 2.1962E-06 19371 20211116_3428_TMUAki_TMT10x_P_F1 93.152 60.227 16183000 27659000 234270 25639000 17628000 27022000 18347000 22243000 20948000 19349000 21808000 15069000 25801000 1498800 26319000 16930000 27335000 18653000 22769000 21228000 19016000 21011000 7 7 6 7 7 7 7 7 7 7 7 9403700 15058000 129530 14001000 10153000 19144000 11282000 12142000 11874000 10575000 12281000 8756100 14047000 829390 14435000 9766500 19028000 11403000 12652000 12069000 10392000 11834000 4 4 3 4 4 4 4 4 4 4 4 6779300 12600000 104750 11638000 7474600 7877900 7065500 10101000 9074100 8774100 9527200 6312900 11754000 669410 11884000 7163100 8307300 7250500 10118000 9159600 8623900 9176500 3 3 3 3 3 3 3 3 3 3 3 3129200000 1977700000 1151500000 19463 1114 17879 99133;99134;99135;99136 119982;119983;119984;119985;119986;119987;119988 119982 1481 7 TSGVVTSCTGVLPQLSMVK Unmodified 1963.0118 0.0118336 1114 P49736 MCM2 DNA replication licensing factor MCM2 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 70.119 69.849 3 1.8341E-10 25236 20211116_3441_TMUAki_TMT10x_S_F3 108.56 91.276 6401800 10740000 29480 9695800 6797100 11662000 7990700 6655600 6700900 6701300 8120200 5960500 10017000 509780 9994400 6545700 11647000 8003000 7021000 6923800 6543000 7789300 2 2 1 2 2 2 2 2 2 2 2 6401800 10740000 29480 9695800 6797100 11662000 7990700 6655600 6700900 6701300 8120200 5960500 10017000 509780 9994400 6545700 11647000 8003000 7021000 6923800 6543000 7789300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 214480000 214480000 0 19464 1114 17879 99137;99138 119989;119990;119991 119991 3 TSIAIDTIINQK Unmodified 1315.7347 0.73473076 805 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 7.09 0.793 3 4 4 6 5 64.733 64.971 2;3 3.3242E-73 21963 20211116_3446_TMUAki_TMT10x_S_F7 339.98 281.17 69146000 114380000 491430 115020000 83518000 95632000 74759000 74774000 74907000 75429000 87687000 64382000 106730000 5999900 117000000 79865000 98150000 76294000 77097000 76652000 73640000 84193000 13 13 6 13 13 13 13 13 13 13 13 33093000 52125000 164520 52270000 43834000 61146000 38620000 34229000 34072000 35121000 40054000 30814000 48639000 2985000 53446000 41905000 61139000 39306000 36187000 35074000 34264000 38453000 7 7 4 7 7 7 7 7 7 7 7 36053000 62256000 326910 62746000 39684000 34486000 36139000 40544000 40834000 40308000 47633000 33569000 58094000 3014900 63554000 37960000 37012000 36988000 40910000 41578000 39376000 45740000 6 6 2 6 6 6 6 6 6 6 6 11165000000 5985400000 5179300000 19465 805 17880 99139;99140;99141;99142;99143;99144;99145;99146;99147;99148;99149 119992;119993;119994;119995;119996;119997;119998;119999;120000;120001;120002;120003;120004;120005 120002 14 TSIAIDTIINQKR Unmodified 1471.8358 0.83584179 805 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 56.213 56.022 3 1.8059E-14 18048 20211116_3429_TMUAki_TMT10x_P_F2 161.87 129.81 24950000 40108000 275080 41617000 37464000 42904000 27202000 44448000 37577000 35316000 37308000 23232000 37431000 2461700 42369000 35679000 43663000 28450000 44840000 37764000 34868000 35998000 5 5 4 5 5 5 5 5 5 5 5 14802000 22998000 169930 23876000 25957000 33528000 18714000 27567000 22516000 20977000 21444000 13783000 21463000 1541800 24440000 24717000 33426000 19479000 28132000 22702000 20759000 20720000 3 3 3 3 3 3 3 3 3 3 3 10148000 17110000 105150 17741000 11507000 9376600 8487700 16881000 15060000 14339000 15863000 9449100 15968000 919920 17929000 10962000 10237000 8970800 16708000 15062000 14109000 15278000 2 2 1 2 2 2 2 2 2 2 2 2195100000 1188400000 1006700000 19466 805 17881 99150;99151;99152;99153 120006;120007;120008;120009;120010 120008 5 TSIDAYDNFDNISLAQR Unmodified 1941.9068 0.90683448 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.6 1.08 3 4 4 4 8 7 66.562 66.415 2;3 1.1224E-206 21095 20211116_3431_TMUAki_TMT10x_P_F4 460.35 415.05 60106000 101950000 546100 98270000 68458000 94140000 72330000 64771000 64103000 66539000 75253000 55965000 95113000 4427600 100450000 65743000 95499000 72910000 67389000 65970000 64913000 72249000 20 20 9 20 20 20 20 20 20 20 20 35478000 59310000 283880 57235000 41083000 68201000 45817000 36947000 36738000 37876000 43411000 33034000 55335000 2249200 58700000 39510000 68100000 45945000 39170000 38009000 36953000 41670000 11 11 5 11 11 11 11 11 11 11 11 24627000 42636000 262220 41035000 27375000 25940000 26513000 27823000 27365000 28664000 31843000 22931000 39778000 2178400 41750000 26233000 27399000 26965000 28219000 27961000 27960000 30579000 9 9 4 9 9 9 9 9 9 9 9 21034000000 11980000000 9054000000 19467 1471 17882 99154;99155;99156;99157;99158;99159;99160;99161;99162;99163;99164;99165;99166;99167;99168 120011;120012;120013;120014;120015;120016;120017;120018;120019;120020;120021;120022;120023;120024;120025;120026;120027;120028;120029;120030 120018 20 TSIEDQDELSSLLQVPLVAGTVNR Unmodified 2583.3392 0.33917563 1258 P56537;P56537-2 EIF6 Eukaryotic translation initiation factor 6 yes no 0 0 0 0 By MS/MS By MS/MS 4.19 1.51 1 1 3 4 4 2 1 9 7 80.252 80.242 2;3 2.6021E-127 26830 20211116_3431_TMUAki_TMT10x_P_F4 343.55 315.58 82542000 151630000 677190 104220000 97679000 167610000 124350000 114410000 107020000 123130000 126760000 76850000 141310000 5810300 110620000 94295000 165640000 124200000 119270000 110330000 119900000 121670000 24 24 11 24 24 24 24 24 24 24 24 51612000 96964000 331530 63598000 52065000 122250000 71246000 75206000 71467000 83429000 81527000 48051000 90353000 2995200 68114000 50367000 119870000 71272000 79085000 73052000 81143000 78335000 13 13 7 13 13 13 13 13 13 13 13 30930000 54666000 345660 40626000 45614000 45357000 53103000 39207000 35550000 39700000 45237000 28799000 50957000 2815100 42508000 43928000 45777000 52930000 40189000 37278000 38752000 43338000 11 11 4 11 11 11 11 11 11 11 11 28913000000 13185000000 15728000000 19468 1258 17883 99169;99170;99171;99172;99173;99174;99175;99176;99177;99178;99179;99180;99181;99182;99183;99184 120031;120032;120033;120034;120035;120036;120037;120038;120039;120040;120041;120042;120043;120044;120045;120046;120047;120048;120049;120050;120051;120052;120053;120054;120055;120056 120039 26 TSIFWNDVKDPVSIEER Unmodified 2034.0058 0.0058202445 1249 P55884;P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 0 0 0 1 By MS/MS By MS/MS 5 1.49 2 2 1 2 2 4 5 68.048 68.099 3 4.4814E-22 20918 20211116_3444_TMUAki_TMT10x_S_F5 176.42 159.34 65833000 106110000 103940 106500000 69342000 69126000 77528000 35938000 30479000 40984000 70974000 61295000 99010000 5261000 108060000 66678000 71981000 76756000 38365000 34503000 39819000 67212000 11 11 4 11 11 11 11 11 11 11 11 27638000 42816000 94172 43672000 30565000 39766000 35760000 15438000 14211000 18056000 28807000 25733000 39955000 2315700 44434000 29437000 40205000 35334000 17002000 15918000 17527000 27337000 5 5 2 5 5 5 5 5 5 5 5 38195000 63291000 9763.9 62827000 38776000 29360000 41769000 20500000 16268000 22927000 42167000 35562000 59055000 2945300 63626000 37241000 31775000 41422000 21363000 18585000 22292000 39875000 6 6 2 6 6 6 6 6 6 6 6 7342900000 3530800000 3812200000 19469 1249 17884 99185;99186;99187;99188;99189;99190;99191;99192;99193 120057;120058;120059;120060;120061;120062;120063;120064;120065;120066;120067;120068 120064 12 TSILAAANPISGHYDR Unmodified 1684.8533 0.85328277 1716 Q14566 MCM6 DNA replication licensing factor MCM6 yes yes 0 0 0 0 By MS/MS By MS/MS 5.29 2.6 2 1 2 2 3 4 50.204 50.256 3 3.2213E-11 13681 20211116_3447_TMUAki_TMT10x_S_F8 137.17 123.01 17751000 30825000 141300 34559000 24283000 29675000 18768000 25409000 24053000 23192000 24798000 16528000 28777000 1522800 34919000 23142000 30436000 19489000 25983000 24265000 22742000 23899000 9 9 5 9 9 9 9 9 9 9 9 8405000 14437000 82510 15722000 15009000 20948000 11585000 11855000 11183000 10106000 11738000 7826100 13476000 813530 16026000 14307000 20813000 11918000 12460000 11414000 9942300 11306000 4 4 3 4 4 4 4 4 4 4 4 9346100 16388000 58789 18837000 9274000 8727100 7182700 13554000 12870000 13086000 13060000 8701600 15301000 709260 18893000 8835600 9622700 7571200 13523000 12851000 12800000 12593000 5 5 2 5 5 5 5 5 5 5 5 4809200000 2498500000 2310800000 19470 1716 17885 99194;99195;99196;99197;99198;99199;99200 120069;120070;120071;120072;120073;120074;120075;120076;120077 120077 9 TSISIPKPGQDGEIVITGQHR Unmodified 2232.1862 0.18624423 2212 Q8N9N2;Q8N9N2-2 ASCC1 Activating signal cointegrator 1 complex subunit 1 yes no 0 0 0 1 By matching By MS/MS 7.5 0.5 1 1 1 1 50.197 50.472 4 0.0001005 13829 20211116_3447_TMUAki_TMT10x_S_F8 69.133 58.345 1731000 3128400 28975 2952500 1842800 1720200 1660700 2864400 2583900 2333700 2776100 1612000 2918500 172080 3006100 1764100 1854100 1722700 2838700 2595100 2301000 2672000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1731000 3128400 28975 2952500 1842800 1720200 1660700 2864400 2583900 2333700 2776100 1612000 2918500 172080 3006100 1764100 1854100 1722700 2838700 2595100 2301000 2672000 1 1 1 1 1 1 1 1 1 1 1 652730000 320220000 332510000 19471 2212 17886 99201;99202 120078 120078 1 TSKAEELLAEEK Unmodified 1346.6929 0.69292553 87 O00429;O00429-2;O00429-4;O00429-3;O00429-5;O00429-9;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 1 By MS/MS 4 0 1 1 49.417 49.571 3 0.0020885 14638 20211116_3442_TMUAki_TMT10x_S_F4 72.662 44.365 4196800 6925400 72700 8709100 3879000 2688300 2695700 6640000 6601600 5338800 6370900 3908200 6468800 411240 8668700 3694000 3198800 2917200 6512700 6536900 5267700 6153000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4196800 6925400 72700 8709100 3879000 2688300 2695700 6640000 6601600 5338800 6370900 3908200 6468800 411240 8668700 3694000 3198800 2917200 6512700 6536900 5267700 6153000 1 1 1 1 1 1 1 1 1 1 1 111180000 0 111180000 19472 87 17887 99203 120079 120079 1 TSLALDESLFR Unmodified 1250.6507 0.65066678 2102 Q86U42;Q86U42-2;Q92843-2 PABPN1 Polyadenylate-binding protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 4.22 1.31 1 2 2 2 2 5 4 66.381 66.265 2 1.5685E-08 21251 20211116_3433_TMUAki_TMT10x_P_F5 156.26 109.18 174610000 296890000 748870 323050000 198030000 224840000 197550000 164090000 147010000 161740000 208330000 162570000 277130000 12050000 326250000 189770000 233750000 198850000 169830000 153940000 158060000 199070000 15 15 6 15 15 15 15 15 15 15 15 83361000 135120000 528720 147950000 94873000 143110000 99719000 78948000 70450000 80449000 98206000 77609000 126130000 6044700 149950000 91023000 144650000 99989000 83552000 73936000 78509000 93876000 7 7 3 7 7 7 7 7 7 7 7 91251000 161770000 220150 175100000 103160000 81731000 97836000 85146000 76556000 81294000 110130000 84960000 151000000 6004900 176290000 98750000 89098000 98859000 86283000 80005000 79555000 105200000 8 8 3 8 8 8 8 8 8 8 8 12486000000 6587900000 5898000000 19473 2102 17888 99204;99205;99206;99207;99208;99209;99210;99211;99212 120080;120081;120082;120083;120084;120085;120086;120087;120088;120089;120090;120091;120092;120093;120094 120085 15 TSLATILDGGEENLEK Unmodified 1688.8469 0.84685999 2155 Q8IXH7;Q8IXH7-4 NELFCD Negative elongation factor C/D yes no 0 0 0 0 By MS/MS By MS/MS 3.14 0.833 2 2 3 3 4 73.058 72.902 3 5.5934E-43 23761 20211116_3431_TMUAki_TMT10x_P_F4 228.19 205.18 12723000 20672000 68945 19109000 13455000 20685000 15146000 14233000 14349000 14665000 16817000 11846000 19284000 1110200 19628000 12947000 20831000 15250000 14810000 14720000 14305000 16146000 5 5 3 5 5 5 5 5 5 5 5 8595800 13563000 53540 12456000 7951900 16502000 10278000 9848000 10151000 10455000 11247000 8003800 12651000 739020 12846000 7685400 16412000 10300000 10367000 10371000 10186000 10816000 3 3 2 3 3 3 3 3 3 3 3 4126900 7109700 15405 6652600 5503000 4183600 4867400 4384900 4198200 4209800 5569500 3842600 6632400 371220 6782200 5261200 4418800 4949700 4442900 4348900 4118800 5330300 2 2 1 2 2 2 2 2 2 2 2 1599300000 809460000 789830000 19474 2155 17889 99213;99214;99215;99216;99217;99218;99219 120095;120096;120097;120098;120099;120100;120101;120102 120098 8 TSLEVPEINALLLVPK Unmodified 1735.0131 0.013137454 2119 Q86W42;Q86W42-3;Q86W42-2 THOC6 THO complex subunit 6 homolog yes no 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 80.176 80.187 3 0.00029363 27889 20211116_3435_TMUAki_TMT10x_P_F7 74.816 59.916 13067000 21272000 28986 19281000 13960000 19066000 15202000 13021000 12357000 13755000 15680000 12167000 19842000 1080900 19807000 13416000 19301000 15267000 13566000 12814000 13404000 15023000 4 4 2 4 4 4 4 4 4 4 4 6751700 10608000 28986 10536000 6006500 12187000 7768000 6752900 6609000 7514000 8049400 6286700 9897800 576340 10778000 5805400 12191000 7751400 7162900 6825300 7307200 7720400 2 2 2 2 2 2 2 2 2 2 2 6315400 10665000 0 8745600 7953200 6879500 7434200 6268200 5748400 6241400 7630400 5879900 9944200 504600 9029600 7610200 7109700 7515800 6403100 5988600 6096800 7302500 2 2 0 2 2 2 2 2 2 2 2 4596200000 2932400000 1663800000 19475 2119 17890 99220;99221;99222;99223;99224 120103;120104;120105;120106 120103 4 TSLVSTIAGILSTVTTSSSGTNPSSSASTTAMPVTQSVK Oxidation (M) 3771.8936 0.89355877 1677 Q14119 VEZF1 Vascular endothelial zinc finger 1 yes yes 0 0 1 0 By MS/MS 7 0 1 1 82.167 82.197 4 3.8184E-07 29158 20211116_3446_TMUAki_TMT10x_S_F7 64.127 53.224 162330 279090 0 266480 257070 230960 221210 199130 170760 182600 227820 151140 260370 0 272210 245590 236760 224690 203570 177950 179020 218010 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 162330 279090 0 266480 257070 230960 221210 199130 170760 182600 227820 151140 260370 0 272210 245590 236760 224690 203570 177950 179020 218010 1 1 0 1 1 1 1 1 1 1 1 122050000 0 122050000 19476 1677 17891 99225 120107 120107 2245 1 TSMTEEYRVPDGMVGLIIGR Oxidation (M) 2239.0977 0.097688494 2380 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 1 1 By MS/MS By MS/MS 5.7 0.9 1 3 4 2 5 5 64.634 64.75 3 4.3543E-10 21560 20211116_3445_TMUAki_TMT10x_S_F6 120.79 110.79 65039000 111500000 1157700 103680000 76022000 92254000 81448000 56477000 50068000 58855000 77924000 60565000 104020000 6470800 106150000 73090000 93883000 81361000 59299000 53297000 57383000 74308000 18 18 15 18 18 18 18 18 18 18 18 31785000 52708000 326990 48886000 32726000 58183000 38399000 28658000 25034000 29153000 37092000 29596000 49168000 2799000 50280000 31531000 58036000 38239000 30643000 26480000 28452000 35408000 9 9 6 9 9 9 9 9 9 9 9 33254000 58797000 830680 54794000 43296000 34071000 43049000 27819000 25035000 29702000 40832000 30969000 54849000 3671800 55872000 41558000 35847000 43122000 28656000 26817000 28931000 38900000 9 9 9 9 9 9 9 9 9 9 9 6747700000 3343800000 3403900000 19477 2380 17892 99226;99227;99228;99229;99230;99231;99232;99233;99234;99235 120108;120109;120110;120111;120112;120113;120114;120115;120116;120117;120118;120119;120120;120121;120122;120123;120124;120125 120120 2718;2719 18 TSMTEEYRVPDGMVGLIIGR Unmodified 2223.1028 0.10277387 2380 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 0 1 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 73.862 73.994 3 1.725E-06 25713 20211116_3446_TMUAki_TMT10x_S_F7 85.518 73.026 63639000 101180000 1555500 106010000 73348000 86591000 79836000 52182000 46406000 56666000 73594000 59266000 94433000 6861800 107520000 70587000 88638000 79607000 54926000 49638000 55158000 70152000 5 5 5 5 5 5 5 5 5 5 5 31735000 48423000 832040 52396000 31697000 51896000 39216000 26174000 22710000 27948000 36213000 29555000 45199000 3406000 53164000 30632000 52321000 38874000 27964000 24305000 27223000 34515000 3 3 3 3 3 3 3 3 3 3 3 31904000 52760000 723490 53614000 41651000 34695000 40620000 26008000 23696000 28718000 37381000 29711000 49234000 3455800 54352000 39954000 36317000 40732000 26963000 25332000 27936000 35636000 2 2 2 2 2 2 2 2 2 2 2 2414500000 1537400000 877090000 19478 2380 17892 99236;99237;99238 120126;120127;120128;120129;120130 120129 5 TSMTEEYRVPDGMVGLIIGR 2 Oxidation (M) 2255.0926 0.092603116 2380 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 2 1 By MS/MS 4 0 1 1 55.27 55.253 3 0.016267 16972 20211116_3442_TMUAki_TMT10x_S_F4 46.276 30.334 3015100 5292400 0 5828600 3070700 2982100 3073000 5834200 6377300 5141500 5633800 2807200 4940400 235530 5865700 2943400 3277700 3219300 5767200 6316800 5050000 5457700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3015100 5292400 0 5828600 3070700 2982100 3073000 5834200 6377300 5141500 5633800 2807200 4940400 235530 5865700 2943400 3277700 3219300 5767200 6316800 5050000 5457700 1 1 0 1 1 1 1 1 1 1 1 1475800000 0 1475800000 19479 2380 17892 99239 120131 120131 2718;2719 1 TSNASRPNFLAPLPHEVTQLR Unmodified 2347.2397 0.23967678 9 A1X283 SH3PXD2B SH3 and PX domain-containing protein 2B yes yes 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 49.658 49.5 4 3.3314E-14 14099 20211116_3440_TMUAki_TMT10x_S_F2 136.53 109.44 3225800 5545000 73130 6044000 5035700 6521000 4112000 5128200 4840800 4216700 4934700 3004100 5175900 360950 6137700 4809700 6582400 4241800 5257000 4896100 4155800 4757400 3 3 3 3 3 3 3 3 3 3 3 1905900 3347700 68826 3493700 3719200 5395000 2978700 3273600 3103800 2691600 2903300 1775100 3124300 247550 3582300 3551700 5331100 3064000 3418100 3145000 2652800 2806900 2 2 2 2 2 2 2 2 2 2 2 1320000 2197300 4303.4 2550300 1316500 1126000 1133300 1854600 1736900 1525000 2031300 1229100 2051600 113400 2555400 1258000 1251300 1177800 1839000 1751100 1503000 1950400 1 1 1 1 1 1 1 1 1 1 1 1107400000 719880000 387550000 19480 9 17893 99240;99241;99242 120132;120133;120134 120134 3 TSNLLLSHAGILK Unmodified 1365.798 0.79799972 751 P21127;Q9UQ88;P21127-4;P21127-5;P21127-10;P21127-6;Q9UQ88-4;P21127-8;Q9UQ88-3;P21127-3;Q9UQ88-10;P21127-12;Q9UQ88-2;P21127-2;P21127-9;Q9UQ88-5;Q9UQ88-9 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 55.889 55.61 3 2.1624E-05 18395 20211116_3430_TMUAki_TMT10x_P_F3 100.11 45.695 3431600 6034000 24190 5930500 5051700 6917000 4219700 6358900 5823300 4999500 5483900 3195200 5630000 320110 6072100 4823700 6973200 4373400 6452700 5842000 4938800 5300700 2 2 1 2 2 2 2 2 2 2 2 1857100 3113400 0 2892500 3286100 5299900 2648400 3235100 3169900 2474500 2766500 1729100 2904300 164360 3002500 3134200 5204300 2735900 3370600 3187700 2448100 2681200 1 1 0 1 1 1 1 1 1 1 1 1574400 2920600 24190 3038000 1765600 1617000 1571300 3123800 2653400 2525000 2717500 1466100 2725700 155750 3069700 1689500 1768800 1637500 3082100 2654300 2490700 2619400 1 1 1 1 1 1 1 1 1 1 1 810530000 677800000 132740000 19481 751 17894 99243;99244;99245 120135;120136 120135 2 TSPDAFVQLALQLAHYK Unmodified 1901.0047 0.0046980325 1135 P50416;P50416-2 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform yes no 0 0 0 0 By MS/MS By MS/MS 4.25 0.433 3 1 2 2 80.377 80.376 3 1.0716E-11 27242 20211116_3442_TMUAki_TMT10x_S_F4 138.39 120.29 10596000 16202000 30395 15325000 11049000 14237000 12430000 7644700 8114100 9117000 11084000 9865700 15114000 898290 15680000 10630000 14423000 12402000 8149400 8548900 8843500 10600000 3 3 2 3 3 3 3 3 3 3 3 5985300 9072900 1227.1 8555600 5630000 9258800 6174100 4487800 4824200 5717000 6563800 5573000 8464000 492390 8775200 5412000 9281700 6192400 4840500 5028600 5532900 6278000 1 1 1 1 1 1 1 1 1 1 1 4610400 7128700 29168 6769600 5418700 4978500 6255400 3156800 3289800 3400000 4519800 4292800 6650500 405890 6904700 5217600 5141300 6209600 3308800 3520300 3310600 4322000 2 2 1 2 2 2 2 2 2 2 2 3378400000 1434400000 1944000000 19482 1135 17895 99246;99247;99248;99249 120137;120138;120139;120140 120139 4 TSPERDPLILLSR Unmodified 1495.8358 0.83584179 2224 Q8NBL1 POGLUT1 Protein O-glucosyltransferase 1 yes yes 0 0 0 1 By MS/MS 6 0 1 1 51.994 52.126 3 0.0006115 14676 20211116_3445_TMUAki_TMT10x_S_F6 75.01 59.119 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19483 2224 17896 99250 120141 120141 1 TSPFELYQFFVR Unmodified 1532.7664 0.76636524 3257 Q9Y2Z4 YARS2 Tyrosine--tRNA ligase, mitochondrial yes yes 0 0 0 0 By MS/MS 4 0 1 1 80.537 80.523 2 0.018984 27288 20211116_3442_TMUAki_TMT10x_S_F4 64.82 37.078 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19484 3257 17897 99251 120142 120142 1 TSPGRPLGTTK Unmodified 1113.6142 0.6142217 2090 Q7Z6I8;Q7Z6I8-2 C5orf24 UPF0461 protein C5orf24 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 29.182 29.222 3 0.0048312 7610 20211116_3439_TMUAki_TMT10x_S_F1 64.121 35.944 253620 500090 540.18 385430 360790 400700 350210 265300 283840 257210 349930 236120 466210 19016 401530 345450 404220 353730 276330 294010 251540 335520 2 2 1 2 2 2 2 2 2 2 2 118450 235270 0 175220 195780 254340 153280 116270 145690 124720 163420 110260 219300 6887.8 184170 186390 251120 157470 125430 149180 121460 157100 1 1 0 1 1 1 1 1 1 1 1 135170 264820 540.18 210210 165010 146360 196930 149030 138150 132490 186510 125860 246900 12128 217350 159050 153100 196260 150890 144830 130080 178420 1 1 1 1 1 1 1 1 1 1 1 9808700 4176200 5632500 19485 2090 17898 99252;99253 120143;120144 120144 2 TSPKPAVVETVTTAKPQQIQALMDEVTK Unmodified 3009.6056 0.60563743 1254 P56192 MARS Methionine--tRNA ligase, cytoplasmic yes yes 0 0 0 2 By MS/MS By matching 1.75 0.433 1 3 3 1 74.562 74.472 4;5 9.9006E-18 25586 20211116_3429_TMUAki_TMT10x_P_F2 129.73 121.34 23626000 36810000 21098 33903000 27045000 44136000 33485000 18805000 17347000 21148000 28348000 21997000 34337000 1856900 34945000 26084000 43763000 33129000 20468000 18744000 20558000 27006000 5 5 1 5 5 5 5 5 5 5 5 23626000 36810000 21098 33903000 27045000 44136000 33485000 18805000 17347000 21148000 28348000 21997000 34337000 1856900 34945000 26084000 43763000 33129000 20468000 18744000 20558000 27006000 5 5 1 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2409700000 1744100000 665650000 19486 1254 17899 99254;99255;99256;99257 120145;120146;120147;120148;120149 120149 5 TSPNEGLSGNPADLERR Unmodified 1811.8762 0.87620306 737 P20020;P20020-5;P20020-2;P20020-6;P20020-4;P20020-1 ATP2B1 Plasma membrane calcium-transporting ATPase 1 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 35.403 35.295 3 5.9793E-11 8554 20211116_3431_TMUAki_TMT10x_P_F4 131.37 112.54 900510 1524700 40351 1932200 1842600 1470100 1239500 906080 947280 837480 1407800 838760 1424200 125460 1935500 1754000 1513500 1279800 947650 992820 820750 1343800 2 2 2 2 2 2 2 2 2 2 2 427740 713970 27040 893730 1363100 1102500 674390 539590 554770 467090 718010 398470 666880 73763 902170 1291300 1097600 716370 574850 575410 459180 687580 1 1 1 1 1 1 1 1 1 1 1 472770 810740 13312 1038500 479470 367610 565100 366490 392510 370380 689830 440290 757360 51696 1033300 462690 415850 563380 372800 417420 361570 656250 1 1 1 1 1 1 1 1 1 1 1 100540000 66387000 34149000 19487 737 17900 99258;99259 120150;120151 120150 2 TSPSGKPATLK Unmodified 1085.6081 0.60807369 829 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 32.871 32.876 3 1.0696E-05 7093 20211116_3428_TMUAki_TMT10x_P_F1 110.92 86.834 2197200 3879400 60968 3051600 3014500 3661700 2211300 2014100 2214100 2109600 2884600 2046300 3616800 250430 3180700 2874000 3655600 2285100 2133800 2276100 2056400 2761900 2 2 2 2 2 2 2 2 2 2 2 1068900 1776600 37795 1414000 1648900 2613700 618390 912310 1081900 1043500 1350200 995500 1656400 131960 1486000 1557500 2550400 695500 1017400 1089900 1013700 1294200 1 1 1 1 1 1 1 1 1 1 1 1128300 2102800 23173 1637600 1365600 1048000 1592900 1101800 1132200 1066100 1534300 1050800 1960400 118470 1694700 1316500 1105200 1589600 1116500 1186200 1042700 1467600 1 1 1 1 1 1 1 1 1 1 1 298810000 147800000 151010000 19488 829 17901 99260;99261 120152;120153 120152 2 TSPYDHMLPGAEHFAEYAGR Oxidation (M) 2263.9957 0.99566626 800 P25325;P25325-2 MPST 3-mercaptopyruvate sulfurtransferase yes no 0 0 1 0 By MS/MS 7 0 1 1 44.304 44.809 4 0.0097651 13297 20211116_3435_TMUAki_TMT10x_P_F7 44.029 33.544 1385300 2723900 10336 2466900 3100300 5079800 2756300 3844400 5310700 2545800 2391500 1289900 2540700 148500 2573900 2964700 4986000 2892900 3932200 5187400 2539900 2397400 1 1 1 1 1 1 1 1 1 1 1 1385300 2723900 10336 2466900 3100300 5079800 2756300 3844400 5310700 2545800 2391500 1289900 2540700 148500 2573900 2964700 4986000 2892900 3932200 5187400 2539900 2397400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 170500000 170500000 0 19489 800 17902 99262 120154 120154 948 1 TSQDFLFSQLQYLPFSNK Unmodified 2162.0684 0.068420501 2352 Q92621 NUP205 Nuclear pore complex protein Nup205 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 80.453 80.404 3 5.5969E-12 29400 20211116_3441_TMUAki_TMT10x_S_F3 123.41 103.83 6685500 11032000 44431 10958000 5879200 6972100 7161500 3851000 3979700 4579900 6406700 6225200 10294000 584390 11125000 5672100 7278500 7098700 4094800 4274000 4442900 6105200 2 2 2 2 2 2 2 2 2 2 2 2708000 4000600 33382 3825500 2099500 3357700 2645200 1790400 1752600 1871200 2448700 2521600 3732300 247100 3908000 2028900 3414200 2627000 1901800 1846700 1824200 2340600 1 1 1 1 1 1 1 1 1 1 1 3977600 7031300 11049 7132800 3779600 3614400 4516300 2060600 2227200 2708700 3958000 3703600 6561300 337290 7216900 3643300 3864300 4471700 2192900 2427300 2618800 3764600 1 1 1 1 1 1 1 1 1 1 1 1626900000 579240000 1047700000 19490 2352 17903 99263;99264 120155;120156 120156 2 TSQDYQALTVHDNLAMK Oxidation (M) 1949.9153 0.91529068 2619 Q9BPX3 NCAPG Condensin complex subunit 3 yes yes 0 0 1 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 45.884 46.023 3 0.00010946 11980 20211116_3444_TMUAki_TMT10x_S_F5 78.661 60.744 748310 1228000 25898 1701300 524130 495340 522480 940520 1030800 765940 1139100 696950 1147700 83036 1684100 504080 589010 545790 928560 1030200 755250 1095500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 748310 1228000 25898 1701300 524130 495340 522480 940520 1030800 765940 1139100 696950 1147700 83036 1684100 504080 589010 545790 928560 1030200 755250 1095500 1 1 1 1 1 1 1 1 1 1 1 235860000 142450000 93401000 19491 2619 17904 99265;99266;99267 120157;120158 120158 2869 2 TSQLIPEMQEAFFQCQVCAHTTR Unmodified 2781.2673 0.26728979 911 P33991 MCM4 DNA replication licensing factor MCM4 yes yes 0 0 0 0 By MS/MS 8 0 1 1 73.323 73.165 3 2.185E-08 23065 20211116_3447_TMUAki_TMT10x_S_F8 93.21 83.956 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19492 911 17905 99268 120159 120159 1 TSQQLQLIDEQDSYIQSR Unmodified 2151.0444 0.044390595 1608 Q13190;Q13190-3;Q13190-2;Q13190-4 STX5 Syntaxin-5 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 58.287 57.959 3 1.649E-10 20400 20211116_3441_TMUAki_TMT10x_S_F3 116.91 99.205 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19493 1608 17906 99269;99270 120160;120161 120161 2 TSQTVATFLDELAQK Unmodified 1650.8465 0.84646606 1190 P52888 THOP1 Thimet oligopeptidase yes yes 0 0 0 0 By MS/MS By matching 7 0 2 1 1 79.449 79.489 3 0.016361 27723 20211116_3435_TMUAki_TMT10x_P_F7 45.883 23.685 11173000 18072000 236730 16587000 11514000 22571000 13539000 11674000 11510000 12429000 14129000 10405000 16857000 1151700 17116000 11106000 22380000 13565000 12442000 11891000 12108000 13549000 2 2 2 2 2 2 2 2 2 2 2 11173000 18072000 236730 16587000 11514000 22571000 13539000 11674000 11510000 12429000 14129000 10405000 16857000 1151700 17116000 11106000 22380000 13565000 12442000 11891000 12108000 13549000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 831730000 592930000 238800000 19494 1190 17907 99271;99272 120162;120163 120163 2 TSRPENAIIYNNNEDFQVGQAK Unmodified 2507.2041 0.20407913 853 P29401;P29401-2 TKT Transketolase yes no 0 0 0 1 By MS/MS By MS/MS 5.33 0.667 1 4 4 4 5 48.128 48.28 3;4 1.3604E-55 12838 20211116_3444_TMUAki_TMT10x_S_F5 227.08 204.17 33554000 54159000 523080 64096000 54763000 62341000 35777000 46868000 48792000 40608000 44384000 31245000 50573000 3100900 64660000 52060000 63270000 37686000 48245000 48911000 39918000 42952000 16 16 11 16 16 16 16 16 16 16 16 24094000 37391000 319540 43301000 47494000 55737000 29863000 32143000 34546000 28162000 30223000 22436000 34912000 2172100 43943000 45113000 55483000 31358000 33752000 34786000 27669000 29289000 10 10 7 10 10 10 10 10 10 10 10 9459800 16767000 203540 20795000 7268800 6604700 5914600 14725000 14246000 12445000 14160000 8809400 15661000 928780 20717000 6947000 7786200 6328200 14493000 14125000 12249000 13662000 6 6 4 6 6 6 6 6 6 6 6 5315300000 2426900000 2888400000 19495 853 17908 99273;99274;99275;99276;99277;99278;99279;99280;99281 120164;120165;120166;120167;120168;120169;120170;120171;120172;120173;120174;120175;120176;120177;120178;120179 120176 16 TSSAETPTIPLGSAVEAIK Unmodified 1870.9888 0.9887732 1872 Q16891;Q16891-2;Q16891-4;Q16891-3 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 68.046 68.066 3 4.3949E-09 21229 20211116_3445_TMUAki_TMT10x_S_F6 118.24 101.55 30023000 52693000 403800 48859000 36883000 51904000 36876000 36622000 32817000 34827000 40096000 27956000 49154000 2896400 50161000 35386000 52345000 37280000 37952000 33821000 34088000 38454000 10 10 7 10 10 10 10 10 10 10 10 17654000 30430000 323450 28610000 21883000 38384000 24218000 22075000 19266000 20473000 23723000 16440000 28387000 1796900 29462000 21059000 38134000 24290000 23219000 19975000 20061000 22747000 6 6 5 6 6 6 6 6 6 6 6 12369000 22263000 80357 20249000 15000000 13520000 12658000 14547000 13550000 14354000 16373000 11517000 20766000 1099600 20699000 14326000 14211000 12990000 14733000 13846000 14027000 15707000 4 4 2 4 4 4 4 4 4 4 4 5118300000 2605300000 2513000000 19496 1872 17909 99282;99283;99284;99285;99286 120180;120181;120182;120183;120184;120185;120186;120187;120188;120189 120189 10 TSSAFVGK Unmodified 795.41267 0.41266834 2575 Q99460;Q99460-2 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 35.287 35.495 2 0.0057573 9484 20211116_3435_TMUAki_TMT10x_P_F7 94.302 59.495 309640 560850 144.83 494470 521840 592040 407480 259570 311060 285950 416470 288280 523080 25957 510590 497320 589640 416320 281480 324410 278190 398490 2 2 1 2 2 2 2 2 2 2 2 309640 560850 144.83 494470 521840 592040 407480 259570 311060 285950 416470 288280 523080 25957 510590 497320 589640 416320 281480 324410 278190 398490 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6234900 6234900 0 19497 2575 17910 99287;99288 120190;120191 120190 2 TSSGDASSLSIEETNK Unmodified 1624.7428 0.74278885 207 O43290 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 0 0 0 0 By MS/MS 3 0 2 2 39.229 39.277 3 0.0027562 11572 20211116_3430_TMUAki_TMT10x_P_F3 64.04 52.063 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19498 207 17911 99289;99290 120192;120193 120192 2 TSTILAAAR Unmodified 902.51853 0.5185304 928 P35249;P35249-2 RFC4 Replication factor C subunit 4 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 36.497 36.896 2 0.0018121 8740 20211116_3436_TMUAki_TMT10x_P_F8 93.267 76.34 472340 801690 655.29 877110 900520 693550 608060 491270 513080 455710 693180 439790 748340 44606 886720 856070 713320 629130 508640 532520 446540 663110 2 2 1 2 2 2 2 2 2 2 2 241490 412500 0 451030 640690 522440 380750 243820 247760 232350 344520 224840 385050 24450 458470 607710 521560 395690 261620 261300 227390 329350 1 1 0 1 1 1 1 1 1 1 1 230850 389180 655.29 426080 259830 171110 227310 247450 265330 223370 348660 214950 363290 20155 428260 248360 191760 233450 247020 271220 219140 333760 1 1 1 1 1 1 1 1 1 1 1 17562000 10670000 6891600 19499 928 17912 99291;99292 120194;120195 120194 2 TSTILGDITSIPELADYIK Unmodified 2049.0882 0.08815289 2406 Q96AC1;Q96AC1-2;Q96AC1-3 FERMT2 Fermitin family homolog 2 yes no 0 0 0 0 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 81.516 81.52 2;3 1.063E-40 28909 20211116_3446_TMUAki_TMT10x_S_F7 194.12 181.76 5369400 8451600 10930 8178100 5695300 8472700 6839700 4951900 4907200 5461200 6457800 4999400 7885200 444600 8366800 5489300 8534100 6818200 5227600 5131800 5312700 6181600 4 4 2 4 4 4 4 4 4 4 4 4397900 6911400 10930 6661600 4254900 7311100 5394200 3952200 3933000 4418400 5131000 4094900 6448100 364990 6823200 4108600 7332500 5366800 4201800 4107600 4296100 4912600 3 3 2 3 3 3 3 3 3 3 3 971450 1540200 0 1516600 1440400 1161600 1445500 999680 974150 1042700 1326800 904450 1437100 79612 1543500 1380700 1201600 1451400 1025900 1024200 1016600 1269000 1 1 0 1 1 1 1 1 1 1 1 847300000 481630000 365670000 19500 2406 17913 99293;99294;99295;99296;99297 120196;120197;120198;120199;120200;120201 120201 6 TSTPEDFIR Unmodified 1064.5138 0.51383895 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 43.559 43.232 2 0.072552 14380 20211116_3441_TMUAki_TMT10x_S_F3 51.066 20.881 2102000 3588200 122380 4543400 1768400 1751300 1414500 3720600 4272200 3270700 3720500 1958100 3351800 283650 4525800 1694100 2000600 1541700 3670000 4201600 3212900 3606100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2102000 3588200 122380 4543400 1768400 1751300 1414500 3720600 4272200 3270700 3720500 1958100 3351800 283650 4525800 1694100 2000600 1541700 3670000 4201600 3212900 3606100 1 1 1 1 1 1 1 1 1 1 1 39082000 0 39082000 19501 3293 17914 99298 120202 120202 1 TSTSAVPNLFVPLNTNPK Unmodified 1899.0102 0.010177341 938 P35611;P35611-2;P35611-4;P35611-6;P35611-3 ADD1 Alpha-adducin yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 71.147 70.873 3 1.7068E-08 24653 20211116_3430_TMUAki_TMT10x_P_F3 114.28 103.01 17154000 30064000 3811.5 27456000 19412000 25264000 20198000 19679000 18464000 19735000 22371000 15971000 28043000 1264400 28161000 18620000 25747000 20393000 20292000 18998000 19272000 21460000 7 7 1 7 7 7 7 7 7 7 7 7119700 11820000 3811.5 10487000 7727500 14086000 8730500 8456200 8058000 7939800 8971400 6628600 11025000 539600 10847000 7430900 14001000 8782500 8866400 8259500 7775700 8626100 3 3 1 3 3 3 3 3 3 3 3 10035000 18244000 0 16968000 11684000 11178000 11467000 11223000 10406000 11795000 13400000 9342200 17019000 724750 17314000 11189000 11746000 11610000 11426000 10739000 11496000 12834000 4 4 0 4 4 4 4 4 4 4 4 2420100000 1263500000 1156600000 19502 938 17915 99299;99300;99301;99302 120203;120204;120205;120206;120207;120208;120209 120204 7 TSTSNVEQYQAMVTSLEESLNK Oxidation (M) 2474.1483 0.14826332 641 P12270 TPR Nucleoprotein TPR yes yes 0 0 1 0 By MS/MS By matching 5.33 0.471 2 1 1 2 74.268 74.259 3 2.2516E-07 24582 20211116_3433_TMUAki_TMT10x_P_F5 86.648 72.338 1683500 3251200 0 2735900 1766600 3532600 2016500 2573400 2178000 2963900 2321400 1567400 3031800 121380 2839400 1699000 3528100 2037400 2676600 2213800 2878600 2234900 1 1 0 1 1 1 1 1 1 1 1 1683500 3251200 0 2735900 1766600 3532600 2016500 2573400 2178000 2963900 2321400 1567400 3031800 121380 2839400 1699000 3528100 2037400 2676600 2213800 2878600 2234900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 752250000 336170000 416080000 19503 641 17916 99303;99304;99305 120210 120210 679 1 TSTVDLPIENQLLWQIDR Unmodified 2140.1164 0.11643333 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 79.229 79.24 2;3 7.0661E-05 26641 20211116_3433_TMUAki_TMT10x_P_F5 83.729 44.51 2849900 4887900 49688 4342400 3140700 3118000 3732600 2534300 2645400 2857500 3543300 2653900 4558900 286660 4450200 3029400 3238900 3721500 2615900 2770700 2777500 3390300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2849900 4887900 49688 4342400 3140700 3118000 3732600 2534300 2645400 2857500 3543300 2653900 4558900 286660 4450200 3029400 3238900 3721500 2615900 2770700 2777500 3390300 1 1 1 1 1 1 1 1 1 1 1 393080000 0 393080000 19504 916 17917 99306;99307 120211;120212 120211 2 TSVLAAANPIESQWNPK Unmodified 1824.937 0.9370124 911 P33991 MCM4 DNA replication licensing factor MCM4 yes yes 0 0 0 0 By MS/MS By MS/MS 7.8 0.4 1 4 4 1 67.259 67.449 3;4 1.2082E-07 20712 20211116_3447_TMUAki_TMT10x_S_F8 105.39 78.954 9493800 16161000 292610 15541000 10917000 11456000 11163000 8959900 8401000 9156900 12438000 8841500 15078000 1036700 15837000 10489000 11866000 11225000 9241600 8810700 8935000 11874000 3 3 2 3 3 3 3 3 3 3 3 1699900 2799700 77742 2618600 2232200 3849600 2476100 2268600 2012600 1985500 2093900 1583400 2611700 220840 2702600 2151200 3810200 2484500 2377900 2070600 1950800 2017400 1 1 1 1 1 1 1 1 1 1 1 7793800 13362000 214870 12922000 8685000 7605900 8686900 6691300 6388400 7171400 10344000 7258100 12466000 815890 13134000 8337800 8055800 8740300 6863800 6740100 6984200 9856500 2 2 1 2 2 2 2 2 2 2 2 2430300000 1237000000 1193300000 19505 911 17918 99308;99309;99310;99311;99312 120213;120214;120215;120216;120217 120216 5 TSVPVLDAELFIPPK Unmodified 1624.9076 0.90760975 407 O95163 IKBKAP Elongator complex protein 1 yes yes 0 0 0 0 By MS/MS 7 0 1 1 78.952 79.001 3 0.00045452 27847 20211116_3446_TMUAki_TMT10x_S_F7 75.462 53.264 3081700 5514000 57512 5476800 4357400 3783900 4766700 2721200 2459000 2974600 4248800 2869800 5145000 326960 5564500 4191800 3935300 4742200 2827900 2666100 2894700 4043300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3081700 5514000 57512 5476800 4357400 3783900 4766700 2721200 2459000 2974600 4248800 2869800 5145000 326960 5564500 4191800 3935300 4742200 2827900 2666100 2894700 4043300 1 1 1 1 1 1 1 1 1 1 1 626200000 0 626200000 19506 407 17919 99313 120218 120218 1 TSVQTEDDQLIAGQSAR Unmodified 1817.8755 0.87553435 922 P35221;P35221-2;P35221-3;P26232;P26232-3;P26232-2;P26232-5;P26232-4;P26232-6 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 yes no 0 0 0 0 By MS/MS 2 0 1 1 40.893 40.622 3 6.4776E-08 11791 20211116_3429_TMUAki_TMT10x_P_F2 112.91 91.076 589610 961430 62722 1183700 2763000 2040100 1259100 1069200 1276200 751400 1166000 549450 897950 137780 1204600 2615300 2003600 1356300 1126600 1293700 746950 1128200 1 1 1 1 1 1 1 1 1 1 1 589610 961430 62722 1183700 2763000 2040100 1259100 1069200 1276200 751400 1166000 549450 897950 137780 1204600 2615300 2003600 1356300 1126600 1293700 746950 1128200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100900000 100900000 0 19507 922 17920 99314 120219 120219 1 TTAAHGLELR Unmodified 1067.5724 0.57235688 554 P08243;P08243-2;P08243-3 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 30.868 30.853 3 0.00037526 6709 20211116_3431_TMUAki_TMT10x_P_F4 96.24 62.279 2992700 4552300 0 3989500 3663200 4536000 3369500 1836100 1915800 2113400 3235800 2786200 4245700 220300 4117900 3502700 4526600 3388200 2011400 2059500 2052600 3080600 2 2 0 2 2 2 2 2 2 2 2 2992700 4552300 0 3989500 3663200 4536000 3369500 1836100 1915800 2113400 3235800 2786200 4245700 220300 4117900 3502700 4526600 3388200 2011400 2059500 2052600 3080600 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 71659000 71659000 0 19508 554 17921 99315;99316 120220;120221 120220 2 TTAAHSLVGTPYYMSPER Unmodified 1979.9411 0.9411115 2282 Q8TDX7 NEK7 Serine/threonine-protein kinase Nek7 yes yes 0 0 0 0 By MS/MS 7 0 1 1 44.138 44.643 3 0.053204 13194 20211116_3435_TMUAki_TMT10x_P_F7 38.824 25.594 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19509 2282 17922 99317 120222 120222 1 TTAAMWALQTVEK Unmodified 1448.7334 0.73335055 2023 Q6UW68 TMEM205 Transmembrane protein 205 yes yes 0 0 0 0 By MS/MS 8 0 1 1 71.663 71.726 3 0.094667 22996 20211116_3436_TMUAki_TMT10x_P_F8 35.037 19.498 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19510 2023 17923 99318 120223 120223 1 TTAARPTFEPAR Acetyl (Protein N-term) 1358.6943 0.69426293 3043 Q9P013 CWC15 Spliceosome-associated protein CWC15 homolog yes yes 1 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 32.899 32.754 2 6.2997E-09 7542 20211116_3431_TMUAki_TMT10x_P_F4 72.607 37.886 856910 1374500 12271 1769700 1665900 1356900 1012900 853530 884150 741260 1179400 797940 1284100 92306 1771300 1581600 1396400 1057500 889850 915570 728580 1128600 3 3 2 3 3 3 3 3 3 3 3 605090 936510 10549 1110500 1516700 1233900 887330 695190 719800 578970 835100 563470 874520 71261 1122400 1439000 1237300 927780 730530 743700 570240 802020 2 2 1 2 2 2 2 2 2 2 2 251810 438020 1722.8 659180 149220 122960 125520 158340 164340 162290 344270 234470 409550 21046 648840 142590 159130 129770 159320 171870 158340 326530 1 1 1 1 1 1 1 1 1 1 1 163600000 118500000 45096000 19511 3043 17924 99319;99320;99321 120224;120225;120226 120225 3 TTAEDGVPAPPLLDPIVQQFGQFSK Unmodified 2654.3592 0.35918279 2660 Q9BTC0 DIDO1 Death-inducer obliterator 1 yes yes 0 0 0 0 By MS/MS By MS/MS 7.25 0.433 3 1 1 3 80.816 80.837 3;4 1.4766E-11 28585 20211116_3446_TMUAki_TMT10x_S_F7 104.97 90.044 5501400 9095300 13563 8387700 6656900 7489300 7408400 5809900 5284400 5902000 7185900 5122400 8484300 481600 8593400 6402400 7647200 7409600 5994600 5536300 5760400 6873100 4 4 2 4 4 4 4 4 4 4 4 1616400 2302100 0 1900800 1080700 2387400 1441500 1281700 979900 1302500 1457600 1505100 2146600 125330 1974700 1045200 2377300 1429100 1359500 1034000 1271300 1391300 1 1 0 1 1 1 1 1 1 1 1 3884900 6793200 13563 6486900 5576100 5101900 5966900 4528200 4304500 4599500 5728300 3617300 6337700 356270 6618600 5357200 5270000 5980500 4635100 4502300 4489200 5481800 3 3 2 3 3 3 3 3 3 3 3 1525700000 398050000 1127600000 19512 2660 17925 99322;99323;99324;99325 120227;120228;120229 120228 3 TTAHFPHPPQCTLLVK Unmodified 1845.956 0.9559737 2206 Q8N766;Q8N766-4;Q8N766-3;Q8N766-2 EMC1 ER membrane protein complex subunit 1 yes no 0 0 0 0 By matching By MS/MS 2 0 2 1 1 45.8 45.639 4 0.0034208 12390 20211116_3440_TMUAki_TMT10x_S_F2 60.489 43.61 882680 1497900 0 1569400 790430 794540 691370 1520700 1330500 1243700 1375500 821830 1398000 67718 1584400 755140 873530 726250 1501200 1327200 1226000 1325500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 882680 1497900 0 1569400 790430 794540 691370 1520700 1330500 1243700 1375500 821830 1398000 67718 1584400 755140 873530 726250 1501200 1327200 1226000 1325500 1 1 0 1 1 1 1 1 1 1 1 564980000 280000000 284990000 19513 2206 17926 99326;99327 120230 120230 1 TTANAIYCPPK Unmodified 1234.6016 0.6016081 73 O00231;O00231-2 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 0 0 0 0 By MS/MS 7 0 4 4 40.212 40.845 3 0.020566 11773 20211116_3446_TMUAki_TMT10x_S_F7 59.57 37.697 566810 924800 19927 938330 661990 634820 774290 635840 699140 551860 829280 527910 862980 66896 951750 638770 665450 777200 643910 719160 542440 795950 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 566810 924800 19927 938330 661990 634820 774290 635840 699140 551860 829280 527910 862980 66896 951750 638770 665450 777200 643910 719160 542440 795950 1 1 1 1 1 1 1 1 1 1 1 38955000 0 38955000 19514 73 17927 99328;99329;99330;99331 120231;120232;120233;120234 120232 4 TTAPVPEPTKPGDPR Unmodified 1561.81 0.81002097 2115 Q86VM9 ZC3H18 Zinc finger CCCH domain-containing protein 18 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 35.052 35.121 3 0.00033361 7462 20211116_3444_TMUAki_TMT10x_S_F5 79.771 31.631 906610 1420500 0 1636700 2138100 1660500 1099400 1056200 1263700 947150 1287000 844100 1326300 86633 1654700 2023600 1676600 1174600 1101100 1279200 929530 1240800 2 2 0 2 2 2 2 2 2 2 2 705010 1062200 0 1253500 1940800 1501200 883200 781450 941520 731700 974080 656390 991860 70906 1269000 1834000 1497800 952980 829360 956440 716670 938650 1 1 0 1 1 1 1 1 1 1 1 201600 358320 0 383120 197290 159340 216180 274780 322190 215450 312920 187700 334450 15727 385750 189580 178720 221580 271770 322800 212860 302150 1 1 0 1 1 1 1 1 1 1 1 94031000 57463000 36568000 19515 2115 17928 99332;99333 120235;120236 120236 2 TTAQVLIR Unmodified 900.53927 0.53926584 680;28 C9JRZ8-2;C9JRZ8;P15121 AKR1B15;AKR1B1 Aldo-keto reductase family 1 member B15;Aldose reductase no no 0 0 0 0 By MS/MS By MS/MS 5.25 2.63 2 1 2 1 2 4 4 34.362 34.56 2 3.203E-09 7736 20211116_3447_TMUAki_TMT10x_S_F8 231.69 120.04 11310000 18012000 48249 18402000 12825000 13006000 12786000 12094000 12433000 11835000 14407000 10530000 16808000 939450 18664000 12295000 13562000 12961000 12335000 12734000 11569000 13837000 10 10 4 10 10 10 10 10 10 10 10 2890400 4404200 8945.6 4282900 4732200 5187200 3324700 3046900 3092100 2982600 3463700 2690900 4109100 225800 4391400 4499500 5180500 3438800 3204000 3169000 2915600 3329800 5 5 1 5 5 5 5 5 5 5 5 8419300 13608000 39303 14119000 8092700 7819000 9461500 9047000 9340900 8852000 10943000 7839400 12699000 713640 14273000 7795400 8381600 9521900 9130600 9564900 8653300 10507000 5 5 3 5 5 5 5 5 5 5 5 944450000 527310000 417140000 19516 28;680 17929 99334;99335;99336;99337;99338;99339;99340;99341 120237;120238;120239;120240;120241;120242;120243;120244;120245;120246 120246 10 TTAQVLIRFPMQR Oxidation (M) 1575.8555 0.85553137 680 P15121 AKR1B1 Aldose reductase yes yes 0 0 1 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 47.207 47.359 3 0.054879 12492 20211116_3444_TMUAki_TMT10x_S_F5 41.967 21.86 4712500 7769200 23382 8281900 8118100 7618500 5413800 6779900 6228000 5311700 6524200 4387900 7251400 457550 8402800 7717300 7783300 5658100 6891700 6310800 5248200 6284500 2 2 1 2 2 2 2 2 2 2 2 2546900 4103200 23382 4482500 5162100 5717500 3648100 3507300 2996900 2738200 3272500 2371600 3830100 269580 4564500 4913000 5698700 3759400 3654500 3087100 2706000 3148300 1 1 1 1 1 1 1 1 1 1 1 2165600 3666000 0 3799500 2956000 1901000 1765700 3272600 3231200 2573500 3251700 2016300 3421200 187980 3838300 2804300 2084600 1898700 3237200 3223800 2542200 3136100 1 1 0 1 1 1 1 1 1 1 1 536110000 372290000 163820000 19517 680 17930 99342;99343;99344 120247 120247 762 1 TTCLCPNFVNTGFIK Unmodified 1770.8433 0.84331171 2226 Q8NBQ5 HSD17B11 Estradiol 17-beta-dehydrogenase 11 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 70.094 69.738 3 2.0463E-06 25202 20211116_3441_TMUAki_TMT10x_S_F3 89.624 76.857 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19518 2226 17931 99345;99346 120248;120249 120249 2 TTCSCSLAVQLSK Unmodified 1453.6905 0.69049946 233 O43681 ASNA1 ATPase ASNA1 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 49.085 49.361 3 3.2753E-09 13830 20211116_3436_TMUAki_TMT10x_P_F8 125.03 93.805 7105900 11765000 126220 12680000 9414100 10406000 7477300 9933600 9101100 9351300 9878900 6617100 10982000 713460 12837000 8984000 10731000 7736100 10106000 9215300 9156900 9505700 3 3 2 3 3 3 3 3 3 3 3 2939800 4570800 64157 4603400 4827000 6285400 3634300 3258700 3021100 3311600 3494300 2737800 4265200 329950 4719000 4602200 6231400 3729800 3467600 3117000 3232100 3356200 1 1 1 1 1 1 1 1 1 1 1 4166100 7194300 62064 8076600 4587200 4121100 3843000 6674900 6080000 6039600 6384600 3879300 6716300 383510 8118000 4381800 4499700 4006300 6638700 6098300 5924800 6149500 2 2 1 2 2 2 2 2 2 2 2 808400000 444340000 364060000 19519 233 17932 99347;99348;99349;99350 120250;120251;120252 120250 3 TTDFSDFLSIVGCTK Unmodified 1689.792 0.79198764 3117 Q9UHD1 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 7.43 0.728 1 2 4 4 3 79.922 79.928 2;3 6.0183E-14 25793 20211116_3447_TMUAki_TMT10x_S_F8 148.18 129.23 18544000 31949000 206650 29655000 19698000 27660000 23961000 15742000 15305000 17732000 21557000 17267000 29803000 1658200 30385000 19001000 28034000 23814000 16667000 16171000 17236000 20602000 6 6 2 6 6 6 6 6 6 6 6 9546500 17430000 206650 16065000 9244700 17397000 11714000 7861600 8022200 9396100 11423000 8890300 16259000 973850 16505000 8938500 17426000 11638000 8520300 8443500 9113500 10914000 3 3 2 3 3 3 3 3 3 3 3 8997600 14519000 0 13590000 10453000 10263000 12247000 7880500 7283000 8336100 10134000 8377000 13544000 684340 13880000 10063000 10607000 12175000 8146200 7727700 8122700 9687700 3 3 0 3 3 3 3 3 3 3 3 5594300000 3343500000 2250900000 19520 3117 17933 99351;99352;99353;99354;99355;99356;99357 120253;120254;120255;120256;120257 120256 5 TTDGVYEGVAIGGDRYPGSTFMDHVLR Oxidation (M) 2928.3712 0.37122082 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 1 1 By MS/MS By MS/MS 5.6 1.02 1 1 2 1 3 2 55.313 55.53 4 1.4051E-05 16949 20211116_3433_TMUAki_TMT10x_P_F5 65.428 57.603 11923000 19589000 61376 19879000 15218000 20522000 13072000 14319000 14470000 14048000 14993000 11100000 18280000 956140 20269000 14533000 20727000 13415000 14863000 14678000 13731000 14447000 6 6 3 6 6 6 6 6 6 6 6 7476900 11795000 27327 12068000 11034000 16109000 8926200 9146400 8966400 8649800 8955700 6960800 11007000 559490 12352000 10519000 16005000 9165700 9635900 9119700 8468300 8639600 4 4 1 4 4 4 4 4 4 4 4 4445700 7794100 34050 7811000 4184200 4412400 4145600 5172600 5503800 5397800 6037500 4139600 7272800 396650 7916500 4013100 4721800 4249100 5227500 5558600 5262500 5807600 2 2 2 2 2 2 2 2 2 2 2 5234600000 3523900000 1710700000 19521 1200 17934 99358;99359;99360;99361;99362 120258;120259;120260;120261;120262;120263 120258 1612 6 TTDGVYEGVAIGGDRYPGSTFMDHVLR Unmodified 2912.3763 0.3763062 1200 P53396;P53396-2;P53396-3 ACLY ATP-citrate synthase yes no 0 0 0 1 By MS/MS By MS/MS 6.33 1.25 1 1 1 2 1 66.068 66.076 4 8.4101E-25 20087 20211116_3434_TMUAki_TMT10x_P_F6 154.86 141.63 4292200 7901500 65943 6773400 4921400 6419300 4664900 5714300 5190600 5636300 5833800 3997000 7368700 426120 6984300 4716400 6545500 4761500 5843100 5280400 5507900 5607800 2 2 2 2 2 2 2 2 2 2 2 1477700 2531700 30545 2394800 1790200 3027000 1755800 2074100 1645900 1586200 1747900 1376100 2361800 155350 2462200 1717500 3023300 1779400 2142300 1682900 1569200 1683000 1 1 1 1 1 1 1 1 1 1 1 2814500 5369800 35399 4378600 3131300 3392300 2909000 3640200 3544700 4050200 4085900 2620900 5006900 270770 4522100 2999000 3522200 2982100 3700900 3597500 3938700 3924800 1 1 1 1 1 1 1 1 1 1 1 2094400000 1621500000 472880000 19522 1200 17934 99363;99364;99365 120264;120265 120264 2 TTDGYLLR Unmodified 937.4869 0.48689592 1305 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 40.555 40.647 2 0.0028038 10661 20211116_3431_TMUAki_TMT10x_P_F4 101.41 62.576 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19523 1305 17935 99366;99367 120266;120267 120266 2 TTEGEEETESRVPGSTRPQR Unmodified 2245.0571 0.057080547 2324 Q8WXH0;Q8WXH0-2;Q8WXH0-6;Q8WXH0-11;Q8WXH0-12;Q8WXH0-5;Q8WXH0-10;Q8WXH0-4;Q8WXH0-3;Q8WXH0-13;Q8WXH0-7 SYNE2 Nesprin-2 yes no 0 0 0 2 By MS/MS 2 0 1 1 27.571 27.334 4 6.5623E-09 6516 20211116_3429_TMUAki_TMT10x_P_F2 112.74 92.898 39907 75070 3355.7 56755 73032 94265 49254 44362 53889 41587 59520 37182 69980 6899.8 59754 69632 92596 51347 47540 54820 40731 57242 1 1 1 1 1 1 1 1 1 1 1 39907 75070 3355.7 56755 73032 94265 49254 44362 53889 41587 59520 37182 69980 6899.8 59754 69632 92596 51347 47540 54820 40731 57242 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3978700 3978700 0 19524 2324 17936 99368 120268 120268 1 TTELQDELSHLR Unmodified 1440.7209 0.72087161 2763 Q9H019;Q9H019-2;Q9H019-3 MTFR1L Mitochondrial fission regulator 1-like yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 52.289 52.021 3 2.977E-12 16826 20211116_3430_TMUAki_TMT10x_P_F3 135.63 108.92 3248300 5777200 299490 6085700 4313400 4106400 3877400 5568400 4891600 4886500 6059200 3026700 5391900 563330 6157000 4143000 4338200 3987200 5567400 4973400 4800500 5808900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3248300 5777200 299490 6085700 4313400 4106400 3877400 5568400 4891600 4886500 6059200 3026700 5391900 563330 6157000 4143000 4338200 3987200 5567400 4973400 4800500 5808900 1 1 1 1 1 1 1 1 1 1 1 195300000 0 195300000 19525 2763 17937 99369;99370;99371 120269;120270 120269 2 TTEMETIYDLGTK Unmodified 1500.7018 0.70177565 3221 Q9Y230;Q9Y230-2 RUVBL2 RuvB-like 2 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 66.482 66.105 3 9.2839E-05 23719 20211116_3441_TMUAki_TMT10x_S_F3 91.858 76.47 5826000 9669200 67946 10133000 7267300 8882900 6576800 6341200 5577500 5706500 7742200 5425100 9024100 560810 10286000 6954600 9069300 6676300 6556600 5794700 5599400 7401600 2 2 1 2 2 2 2 2 2 2 2 3530400 5515300 67946 5716500 4477300 6628000 4300700 3619300 3151900 3159000 4473400 3287700 5147100 369280 5831200 4292700 6628400 4336100 3817900 3303600 3104200 4274400 1 1 1 1 1 1 1 1 1 1 1 2295600 4153900 0 4416900 2790000 2254900 2276100 2722000 2425700 2547400 3268800 2137400 3877000 191530 4455000 2661900 2441000 2340200 2738700 2491100 2495200 3127200 1 1 0 1 1 1 1 1 1 1 1 425820000 173720000 252100000 19526 3221 17938 99372;99373 120271;120272 120272 2 TTEPGVTGLLLAVEGPAAK Unmodified 1823.004 0.0040293305 1726 Q14690 PDCD11 Protein RRP5 homolog yes yes 0 0 0 0 By MS/MS 6 0 1 1 78.224 78.202 3 4.0933E-05 25033 20211116_3434_TMUAki_TMT10x_P_F6 78.661 65.257 2763700 4981600 136900 4378400 2750500 6266600 3677300 3448400 3728000 3436700 3602700 2574300 4646100 356530 4537500 2668900 6204200 3683200 3648000 3785900 3356900 3479300 1 1 1 1 1 1 1 1 1 1 1 2763700 4981600 136900 4378400 2750500 6266600 3677300 3448400 3728000 3436700 3602700 2574300 4646100 356530 4537500 2668900 6204200 3683200 3648000 3785900 3356900 3479300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 548840000 548840000 0 19527 1726 17939 99374 120273 120273 1 TTFEDLIQR Unmodified 1121.5717 0.57168818 401 O94979;O94979-9;O94979-6;O94979-3;O94979-10;O94979-4;O94979-2;O94979-8;O94979-7 SEC31A Protein transport protein Sec31A yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 57.883 57.915 2 8.1205E-05 17616 20211116_3431_TMUAki_TMT10x_P_F4 141.23 99.599 12455000 20321000 237170 21744000 16038000 20446000 13298000 16549000 16614000 15465000 17876000 11599000 18967000 1303800 22062000 15324000 20822000 13735000 16990000 16802000 15149000 17205000 2 2 2 2 2 2 2 2 2 2 2 6591700 10118000 131720 10821000 10645000 14637000 8339100 8637800 8642900 7715600 9158800 6138500 9444000 726020 11046000 10157000 14541000 8588700 9057500 8797700 7573500 8819200 1 1 1 1 1 1 1 1 1 1 1 5863700 10203000 105450 10923000 5393400 5809600 4959000 7911500 7971400 7749600 8716900 5460400 9522900 577830 11016000 5166900 6281100 5146100 7932900 8004200 7575400 8385800 1 1 1 1 1 1 1 1 1 1 1 905990000 667400000 238580000 19528 401 17940 99375;99376 120274;120275 120274 2 TTFEIEISR Unmodified 1094.5608 0.56078914 1967 Q69YN4;Q69YN4-4;Q69YN4-2;Q69YN4-3 KIAA1429 Protein virilizer homolog yes no 0 0 0 0 By MS/MS By matching 3.5 0.5 1 1 1 1 52.836 52.799 2 0.013794 17224 20211116_3430_TMUAki_TMT10x_P_F3 63.397 35.661 2313800 3481200 84754 3872600 3290300 4756500 2958400 2885300 2712900 2644100 2929800 2155000 3249800 284490 3936200 3151700 4749000 3010600 3020800 2778300 2592300 2819600 1 1 1 1 1 1 1 1 1 1 1 2313800 3481200 84754 3872600 3290300 4756500 2958400 2885300 2712900 2644100 2929800 2155000 3249800 284490 3936200 3151700 4749000 3010600 3020800 2778300 2592300 2819600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 212060000 102230000 109830000 19529 1967 17941 99377;99378 120276 120276 1 TTFGATSGCPSLTPGSCSLGTLR Unmodified 2327.0886 0.088580371 2573 Q99453 PHOX2B Paired mesoderm homeobox protein 2B yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 59.999 59.751 3 4.1913E-21 18301 20211116_3440_TMUAki_TMT10x_S_F2 153.36 131.3 6168100 10644000 61954 10362000 7164600 7758800 7068400 7818900 6733900 7156100 7981100 5743000 9930900 511680 10552000 6866500 8066100 7164500 7926900 6909400 7016300 7660500 4 4 1 4 4 4 4 4 4 4 4 1558100 2689800 0 2541400 1880400 3122000 1690400 2026800 1642500 1890800 1914000 1450300 2509300 88070 2611800 1795200 3120100 1723100 2111900 1682700 1852200 1838000 1 1 0 1 1 1 1 1 1 1 1 4610100 7954200 61954 7820500 5284300 4636800 5378000 5792200 5091400 5265300 6067100 4292700 7421600 423610 7940000 5071200 4946000 5441400 5815000 5226800 5164100 5822500 3 3 1 3 3 3 3 3 3 3 3 2631600000 1359500000 1272100000 19530 2573 17942 99379;99380 120277;120278;120279;120280 120279 4 TTGEGTSLRGDINVCIVGDPSTAK Unmodified 2447.1962 0.19621656 1716 Q14566 MCM6 DNA replication licensing factor MCM6 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0 4 2 2 53.287 53.474 3;4 1.5521E-48 14928 20211116_3444_TMUAki_TMT10x_S_F5 214.25 188.93 9981200 16972000 227560 17349000 14020000 13850000 10964000 11873000 11008000 10553000 13948000 9295200 15838000 1096200 17620000 13380000 14281000 11282000 12132000 11301000 10361000 13364000 5 5 5 5 5 5 5 5 5 5 5 3721500 6158600 139660 6497000 5827700 8148400 4857400 5011000 4446700 4143300 5716600 3466100 5747900 468190 6628800 5572000 8128700 4965100 5227200 4586800 4082300 5475200 2 2 2 2 2 2 2 2 2 2 2 6259800 10814000 87907 10852000 8192600 5701800 6106500 6861500 6561400 6409500 8231800 5829100 10091000 627980 10991000 7808300 6152300 6317200 6904300 6714500 6278500 7889300 3 3 3 3 3 3 3 3 3 3 3 1539300000 691920000 847390000 19531 1716 17943 99381;99382;99383;99384 120281;120282;120283;120284;120285;120286 120285 6 TTGFGMIYDSLDYAK Oxidation (M) 1696.7654 0.76543854 1371 P62847;P62847-2;P62847-3;P62847-4 RPS24 40S ribosomal protein S24 yes no 0 0 1 0 By MS/MS By MS/MS 5.87 1.15 2 4 4 4 1 8 7 71.007 71.081 2;3 1.9254E-23 24471 20211116_3446_TMUAki_TMT10x_S_F7 187.85 170.91 109030000 197060000 1254200 169650000 126860000 193030000 134300000 139130000 123030000 135300000 149080000 101520000 183770000 8977400 175360000 121890000 193990000 135490000 144060000 126580000 132300000 143000000 20 20 11 20 20 20 20 20 20 20 20 65841000 117210000 542540 103650000 73238000 145110000 84504000 83239000 74279000 80404000 88344000 61306000 109320000 4621400 107320000 70525000 143890000 84810000 87669000 76512000 78643000 84786000 11 11 4 11 11 11 11 11 11 11 11 43186000 79848000 711660 65998000 53624000 47913000 49796000 55889000 48754000 54897000 60733000 40215000 74455000 4356100 68037000 51362000 50106000 50678000 56392000 50069000 53656000 58216000 9 9 7 9 9 9 9 9 9 9 9 25487000000 12968000000 12520000000 19532 1371 17944 99385;99386;99387;99388;99389;99390;99391;99392;99393;99394;99395;99396;99397;99398;99399 120287;120288;120289;120290;120291;120292;120293;120294;120295;120296;120297;120298;120299;120300;120301;120302;120303;120304;120305;120306;120307 120305 1846 21 TTGFGMIYDSLDYAK Unmodified 1680.7705 0.77052392 1371 P62847;P62847-2;P62847-3;P62847-4 RPS24 40S ribosomal protein S24 yes no 0 0 0 0 By MS/MS By MS/MS 7.06 1.06 2 3 4 8 11 6 69.619 69.664 2;3 2.4997E-33 25135 20211116_3445_TMUAki_TMT10x_S_F6 227.2 211.66 99202000 168220000 1101600 173050000 105680000 91355000 117570000 36799000 24391000 43435000 98436000 92373000 156990000 9112300 174980000 101690000 96879000 115750000 40366000 31519000 42148000 92665000 12 12 8 12 12 12 12 12 12 12 12 46601000 75878000 517920 79825000 44072000 60131000 56373000 20181000 14312000 22613000 45816000 43394000 70817000 4243400 80861000 42595000 61575000 55236000 22607000 17519000 21985000 43222000 8 8 5 8 8 8 8 8 8 8 8 52600000 92345000 583720 93228000 61613000 31223000 61193000 16618000 10079000 20823000 52620000 48979000 86171000 4868900 94118000 59091000 35305000 60511000 17759000 14000000 20163000 49444000 4 4 3 4 4 4 4 4 4 4 4 13806000000 6677900000 7127700000 19533 1371 17944 99400;99401;99402;99403;99404;99405;99406;99407;99408;99409;99410;99411;99412;99413;99414;99415;99416 120308;120309;120310;120311;120312;120313;120314;120315;120316;120317;120318;120319;120320;120321;120322;120323;120324 120320 17 TTGFGMIYDSLDYAKK Oxidation (M) 1824.8604 0.86040156 1371 P62847;P62847-2;P62847-3;P62847-4 RPS24 40S ribosomal protein S24 yes no 0 0 1 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 63.743 64.064 3 3.1572E-05 19860 20211116_3436_TMUAki_TMT10x_P_F8 86.497 70.19 28597000 58268000 257090 48035000 41284000 62580000 37034000 45713000 37550000 40392000 41839000 26628000 54332000 2667000 49944000 39486000 62476000 37803000 47169000 38330000 39668000 40228000 5 5 2 5 5 5 5 5 5 5 5 17173000 35498000 189000 29205000 27123000 50520000 25231000 27657000 23186000 24582000 24582000 15991000 33100000 1641200 30557000 25964000 49638000 25628000 29181000 23726000 24135000 23670000 3 3 1 3 3 3 3 3 3 3 3 11424000 22770000 68086 18830000 14161000 12060000 11803000 18056000 14364000 15810000 17257000 10637000 21232000 1025700 19387000 13522000 12838000 12175000 17988000 14604000 15534000 16558000 2 2 1 2 2 2 2 2 2 2 2 3524400000 1734000000 1790400000 19534 1371 17945 99417;99418;99419;99420 120325;120326;120327;120328;120329 120327 1846 5 TTGFGMIYDSLDYAKK Unmodified 1808.8655 0.86548694 1371 P62847;P62847-2;P62847-3;P62847-4 RPS24 40S ribosomal protein S24 yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 71.267 71.212 3 2.3461E-15 22777 20211116_3436_TMUAki_TMT10x_P_F8 154.82 128.96 22496000 38470000 211630 36578000 26044000 27025000 28312000 10485000 7849800 12035000 23105000 20948000 35890000 2112000 37306000 25042000 27749000 27966000 11541000 9422600 11690000 21817000 3 3 3 3 3 3 3 3 3 3 3 16235000 27529000 129740 25818000 18095000 21997000 21555000 7262000 5407600 8398800 15998000 15117000 25681000 1493000 26402000 17445000 22314000 21183000 8161200 6583700 8155900 15105000 2 2 2 2 2 2 2 2 2 2 2 6261300 10941000 81886 10760000 7948700 5028100 6757300 3222600 2442200 3636200 7107100 5830500 10208000 619060 10904000 7596600 5435300 6782900 3380000 2838900 3534300 6711600 1 1 1 1 1 1 1 1 1 1 1 1405800000 717760000 687990000 19535 1371 17945 99421;99422 120330;120331;120332 120331 3 TTGIVETHFTFK Unmodified 1379.7085 0.70851601 563;1394;576 P08754;P04899;P04899-4;P04899-6;P04899-3;P04899-5;P04899-2;P09471;P09471-2;P63096;P63096-2 GNAI3;GNAI2;GNAO1;GNAI1 Guanine nucleotide-binding protein G(k) subunit alpha;Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(o) subunit alpha;Guanine nucleotide-binding protein G(i) subunit alpha-1 no no 0 0 0 0 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 52.027 52.265 3 1.6875E-09 16189 20211116_3435_TMUAki_TMT10x_P_F7 154.67 137.9 50272000 83932000 483530 90225000 67942000 85363000 53477000 64530000 65526000 64917000 68952000 46810000 78341000 4720900 91527000 64802000 86794000 55373000 66673000 66255000 63386000 66409000 9 9 4 9 9 9 9 9 9 9 9 24653000 40136000 477060 42675000 41782000 60290000 30221000 32674000 33333000 32059000 33353000 22958000 37461000 2683400 43619000 39798000 59712000 31355000 34596000 33775000 31336000 32174000 5 5 3 5 5 5 5 5 5 5 5 25619000 43796000 6467.1 47550000 26160000 25073000 23255000 31856000 32193000 32858000 35598000 23853000 40881000 2037500 47908000 25004000 27081000 24017000 32077000 32480000 32049000 34235000 4 4 1 4 4 4 4 4 4 4 4 4303500000 2295500000 2008000000 19536 563;576;1394 17946 99423;99424;99425;99426;99427;99428 120333;120334;120335;120336;120337;120338;120339;120340;120341 120336 9 TTGIVMDSGDGVTHTVPIYEGYALPHAILR Oxidation (M) 3198.6019 0.60194904 1276;1406 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 1 0 By MS/MS By MS/MS 6.45 1.24 2 2 2 3 12 40 78 17 79 77 60.574 60.638 3;4;5 3.6971E-58 1041 20211116_3446_TMUAki_TMT10x_S_F7 217.7 201.69 301100000 537820000 2338800 480060000 389080000 559810000 386350000 400890000 425840000 421400000 417020000 280370000 501630000 15241000 495010000 373060000 561800000 393260000 416230000 431180000 410720000 402550000 190 190 61 190 190 191 189 190 190 190 190 160550000 273170000 1637800 241310000 184790000 356030000 196610000 214880000 211620000 217150000 208950000 149490000 254780000 9373500 250140000 177540000 352450000 199280000 225670000 214540000 211990000 201650000 100 100 30 100 100 101 99 100 100 100 100 140560000 264650000 701050 238750000 204290000 203780000 189740000 186000000 214220000 204250000 208060000 130880000 246850000 5867600 244870000 195530000 209360000 193980000 190560000 216640000 198730000 200900000 90 90 31 90 90 90 90 90 90 90 90 907750000000 475280000000 432470000000 19537 1276;1406 17947 99429;99430;99431;99432;99433;99434;99435;99436;99437;99438;99439;99440;99441;99442;99443;99444;99445;99446;99447;99448;99449;99450;99451;99452;99453;99454;99455;99456;99457;99458;99459;99460;99461;99462;99463;99464;99465;99466;99467;99468;99469;99470;99471;99472;99473;99474;99475;99476;99477;99478;99479;99480;99481;99482;99483;99484;99485;99486;99487;99488;99489;99490;99491;99492;99493;99494;99495;99496;99497;99498;99499;99500;99501;99502;99503;99504;99505;99506;99507;99508;99509;99510;99511;99512;99513;99514;99515;99516;99517;99518;99519;99520;99521;99522;99523;99524;99525;99526;99527;99528;99529;99530;99531;99532;99533;99534;99535;99536;99537;99538;99539;99540;99541;99542;99543;99544;99545;99546;99547;99548;99549;99550;99551;99552;99553;99554;99555;99556;99557;99558;99559;99560;99561;99562;99563;99564;99565;99566;99567;99568;99569;99570;99571;99572;99573;99574;99575;99576;99577;99578;99579;99580;99581;99582;99583;99584 120342;120343;120344;120345;120346;120347;120348;120349;120350;120351;120352;120353;120354;120355;120356;120357;120358;120359;120360;120361;120362;120363;120364;120365;120366;120367;120368;120369;120370;120371;120372;120373;120374;120375;120376;120377;120378;120379;120380;120381;120382;120383;120384;120385;120386;120387;120388;120389;120390;120391;120392;120393;120394;120395;120396;120397;120398;120399;120400;120401;120402;120403;120404;120405;120406;120407;120408;120409;120410;120411;120412;120413;120414;120415;120416;120417;120418;120419;120420;120421;120422;120423;120424;120425;120426;120427;120428;120429;120430;120431;120432;120433;120434;120435;120436;120437;120438;120439;120440;120441;120442;120443;120444;120445;120446;120447;120448;120449;120450;120451;120452;120453;120454;120455;120456;120457;120458;120459;120460;120461;120462;120463;120464;120465;120466;120467;120468;120469;120470;120471;120472;120473;120474;120475;120476;120477;120478;120479;120480;120481;120482;120483;120484;120485;120486;120487;120488;120489;120490;120491;120492;120493;120494;120495;120496;120497;120498;120499;120500;120501;120502;120503;120504;120505;120506;120507;120508;120509;120510;120511;120512;120513;120514;120515;120516;120517;120518;120519;120520;120521;120522;120523;120524;120525;120526;120527;120528;120529;120530 120481 1725 189 TTGIVMDSGDGVTHTVPIYEGYALPHAILR Unmodified 3182.607 0.60703441 1276;1406 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS 6.47 1.41 2 1 2 3 4 17 47 12 46 42 61.857 61.878 3;4;5 2.7261E-82 24992 20211116_3441_TMUAki_TMT10x_S_F3 240.41 230.95 290720000 512340000 3692100 483240000 317650000 434420000 363610000 273340000 246210000 271550000 348390000 270700000 477960000 19136000 494310000 305870000 441950000 362790000 285990000 259240000 265290000 332920000 137 137 69 137 137 137 137 137 137 137 137 173360000 296550000 1913200 272380000 185270000 317580000 223170000 175890000 158380000 169390000 206170000 161430000 276620000 10827000 280250000 178670000 317550000 222390000 185790000 165660000 165700000 197410000 78 78 39 78 78 78 78 78 78 78 78 117350000 215790000 1778900 210860000 132370000 116840000 140440000 97456000 87825000 102170000 142220000 109280000 201340000 8308400 214060000 127200000 124400000 140410000 100210000 93579000 99587000 135510000 59 59 30 59 59 59 59 59 59 59 59 599580000000 304430000000 295150000000 19538 1276;1406 17947 99585;99586;99587;99588;99589;99590;99591;99592;99593;99594;99595;99596;99597;99598;99599;99600;99601;99602;99603;99604;99605;99606;99607;99608;99609;99610;99611;99612;99613;99614;99615;99616;99617;99618;99619;99620;99621;99622;99623;99624;99625;99626;99627;99628;99629;99630;99631;99632;99633;99634;99635;99636;99637;99638;99639;99640;99641;99642;99643;99644;99645;99646;99647;99648;99649;99650;99651;99652;99653;99654;99655;99656;99657;99658;99659;99660;99661;99662;99663;99664;99665;99666;99667;99668;99669;99670;99671;99672 120531;120532;120533;120534;120535;120536;120537;120538;120539;120540;120541;120542;120543;120544;120545;120546;120547;120548;120549;120550;120551;120552;120553;120554;120555;120556;120557;120558;120559;120560;120561;120562;120563;120564;120565;120566;120567;120568;120569;120570;120571;120572;120573;120574;120575;120576;120577;120578;120579;120580;120581;120582;120583;120584;120585;120586;120587;120588;120589;120590;120591;120592;120593;120594;120595;120596;120597;120598;120599;120600;120601;120602;120603;120604;120605;120606;120607;120608;120609;120610;120611;120612;120613;120614;120615;120616;120617;120618;120619;120620;120621;120622;120623;120624;120625;120626;120627;120628;120629;120630;120631;120632;120633;120634;120635;120636;120637;120638;120639;120640;120641;120642;120643;120644;120645;120646;120647;120648;120649;120650;120651;120652;120653;120654;120655;120656;120657;120658;120659;120660;120661;120662;120663;120664;120665;120666;120667 120613 137 TTGLVGLAVCNTPHER Unmodified 1723.8676 0.86755262 1861 Q16718 NDUFA5 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 yes yes 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 44.351 44.866 3 4.4867E-08 13358 20211116_3435_TMUAki_TMT10x_P_F7 118.21 105.22 4971500 8742400 89708 10771000 7962800 8400000 5272100 7061100 7653000 5772300 7404600 4628900 8165100 443130 10809000 7566700 8673600 5562100 7208200 7672600 5690700 7150600 3 3 1 3 3 3 3 3 3 3 3 3008000 5206100 0 5840900 6738100 7178100 4224600 4641800 4537700 3596900 4302900 2800000 4860300 207080 5933800 6391400 7173100 4426300 4816200 4594300 3555900 4158100 2 2 0 2 2 2 2 2 2 2 2 1963600 3536200 89708 4930000 1224700 1221900 1047500 2419300 3115300 2175500 3101700 1828900 3304900 236050 4875500 1175300 1500400 1135800 2392000 3078300 2134700 2992500 1 1 1 1 1 1 1 1 1 1 1 547690000 355530000 192160000 19539 1861 17948 99673;99674;99675 120668;120669;120670;120671 120670 4 TTGTPPDSSLVTYELHSRPEQDK Unmodified 2557.2296 0.22962518 1647 Q13561;Q13561-3;Q13561-2 DCTN2 Dynactin subunit 2 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 1.12 2 2 2 2 4 4 45.923 45.99 4 2.4206E-46 12715 20211116_3431_TMUAki_TMT10x_P_F4 215.58 174.32 16378000 27182000 106610 31739000 27022000 30342000 17951000 17376000 20426000 18661000 21509000 15250000 25381000 1261100 32036000 25678000 30705000 18760000 18359000 20710000 18173000 20715000 10 10 5 10 10 10 10 10 10 10 10 10498000 17380000 103480 20514000 23055000 26733000 15409000 12324000 14261000 12762000 14398000 9774900 16229000 1025900 20799000 21913000 26526000 15994000 13271000 14563000 12446000 13885000 7 7 4 7 7 7 7 7 7 7 7 5880100 9802300 3123.6 11225000 3966800 3608800 2542000 5051200 6164800 5899200 7110700 5474700 9151900 235240 11237000 3765200 4178600 2765100 5088300 6146700 5726600 6830200 3 3 1 3 3 3 3 3 3 3 3 4112100000 2733300000 1378800000 19540 1647 17949 99676;99677;99678;99679;99680;99681;99682;99683 120672;120673;120674;120675;120676;120677;120678;120679;120680;120681 120675 10 TTGTPPDSSLVTYELHSRPEQDKFSQAAK Unmodified 3189.5578 0.55783561 1647 Q13561;Q13561-3;Q13561-2 DCTN2 Dynactin subunit 2 yes no 0 0 0 2 By MS/MS 6 0 1 1 50.916 51.058 5 0.0051076 14272 20211116_3445_TMUAki_TMT10x_S_F6 43.835 37.186 1501500 2870600 0 2831100 1563900 1886300 1278800 4433200 3468100 3055000 2680000 1397900 2678400 115100 2876900 1491700 2037200 1379800 4337600 3404400 3040500 2609700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1501500 2870600 0 2831100 1563900 1886300 1278800 4433200 3468100 3055000 2680000 1397900 2678400 115100 2876900 1491700 2037200 1379800 4337600 3404400 3040500 2609700 1 1 0 1 1 1 1 1 1 1 1 222890000 0 222890000 19541 1647 17950 99684 120682 120682 1 TTGVVLDSGDGVTHAVPIYEGFAMPHSIMR 2 Oxidation (M) 3188.5271 0.52706953 1298;1005 P42025;P61163 ACTR1B;ACTR1A Beta-centractin;Alpha-centractin no no 0 0 2 0 By MS/MS By MS/MS 6.17 1.07 2 2 1 1 4 2 60.545 60.748 4 6.5885E-15 18244 20211116_3445_TMUAki_TMT10x_S_F6 103.21 92.405 17164000 30449000 308550 29332000 22154000 30617000 19983000 23641000 23131000 22631000 24169000 15984000 28408000 1717900 30022000 21202000 30955000 20480000 24359000 23431000 22145000 23283000 8 8 6 8 8 8 8 8 8 8 8 9132100 15023000 182580 15268000 11221000 21252000 11687000 12787000 11844000 11994000 12509000 8504100 14019000 942250 15648000 10781000 21091000 11835000 13404000 12066000 11746000 12046000 4 4 3 4 4 4 4 4 4 4 4 8032400 15425000 125970 14064000 10932000 9365500 8296300 10854000 11287000 10638000 11661000 7479500 14389000 775690 14374000 10421000 9864200 8645700 10954000 11365000 10398000 11237000 4 4 3 4 4 4 4 4 4 4 4 6834900000 4542700000 2292200000 19542 1005;1298 17951 99685;99686;99687;99688;99689;99690 120683;120684;120685;120686;120687;120688;120689;120690 120688 1298;1299 8 TTGVVLDSGDGVTHAVPIYEGFAMPHSIMR Oxidation (M) 3172.5322 0.53215491 1298;1005 P42025;P61163 ACTR1B;ACTR1A Beta-centractin;Alpha-centractin no no 0 0 1 0 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 64.221 64.565 4 2.4463E-20 21258 20211116_3435_TMUAki_TMT10x_P_F7 128.58 118.32 10307000 18992000 163410 17779000 12371000 15970000 12463000 9877200 9486200 10539000 12627000 9597900 17717000 1017300 18196000 11873000 16244000 12545000 10370000 9892300 10266000 12084000 6 6 4 6 6 6 6 6 6 6 6 5132300 9383100 103700 9059400 6272400 10566000 6904300 4771200 4592200 5236200 6158800 4779300 8754200 525550 9287500 6035600 10541000 6898700 5157400 4828500 5094800 5892600 3 3 2 3 3 3 3 3 3 3 3 5174700 9609300 59715 8719600 6098800 5403600 5559200 5106000 4894000 5302700 6468200 4818600 8963200 491750 8908700 5837500 5702600 5646500 5212300 5063800 5170800 6190900 3 3 2 3 3 3 3 3 3 3 3 2795700000 785520000 2010200000 19543 1005;1298 17951 99691;99692;99693 120691;120692;120693;120694;120695;120696 120691 1298;1299 6 TTGVVLDSGDGVTHAVPIYEGFAMPHSIMR Unmodified 3156.5372 0.53724029 1298;1005 P42025;P61163 ACTR1B;ACTR1A Beta-centractin;Alpha-centractin no no 0 0 0 0 By MS/MS 7 0 1 1 69.927 70.203 4 2.8865E-35 24156 20211116_3446_TMUAki_TMT10x_S_F7 166.35 159.07 1277000 2138100 56122 2101700 1905500 1249300 1523300 1329400 1243000 1175000 1470100 1189400 1994900 166980 2133900 1820900 1327100 1556500 1342900 1284900 1154000 1411100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1277000 2138100 56122 2101700 1905500 1249300 1523300 1329400 1243000 1175000 1470100 1189400 1994900 166980 2133900 1820900 1327100 1556500 1342900 1284900 1154000 1411100 1 1 1 1 1 1 1 1 1 1 1 776770000 0 776770000 19544 1005;1298 17951 99694 120697 120697 1 TTHFVEGGDAGNREDQINR Unmodified 2114.973 0.97295699 716 P18124 RPL7 60S ribosomal protein L7 yes yes 0 0 0 1 By MS/MS By MS/MS 2.45 1.37 4 2 2 2 1 7 4 30.23 30.153 3;4 7.0114E-65 9061 20211116_3441_TMUAki_TMT10x_S_F3 276.4 256.85 1351300 2291300 17961 3028700 5153500 3142300 1732500 1885400 2533600 1203000 2391600 1258200 2140800 163210 3039400 4855700 3165900 1961100 1959900 2537400 1203000 2311500 12 12 6 12 12 12 12 12 12 12 12 1042000 1766100 16166 2282100 4831000 2900900 1424800 1407800 1904400 927090 1784100 970280 1649800 147690 2300900 4547100 2883500 1638200 1492300 1912100 925250 1724800 8 8 5 8 8 8 8 8 8 8 8 309260 525270 1795.3 746560 322480 241400 307770 477610 629270 275910 607520 287920 490960 15524 738430 308570 282390 322910 467650 625330 277780 586730 4 4 1 4 4 4 4 4 4 4 4 1616100000 901630000 714480000 19545 716 17952 99695;99696;99697;99698;99699;99700;99701;99702;99703;99704;99705 120698;120699;120700;120701;120702;120703;120704;120705;120706;120707;120708;120709 120709 12 TTHVVNLGSNQYLFSVIVDPK Unmodified 2330.227 0.22704641 2545 Q96RS6;Q96RS6-2;Q96RS6-3 NUDCD1 NudC domain-containing protein 1 yes no 0 0 0 0 By MS/MS 2 0 1 1 74.508 74.364 3 1.879E-10 25535 20211116_3429_TMUAki_TMT10x_P_F2 113.17 97.043 4113500 6472300 44881 5700400 3807800 8903600 4922800 5608100 5242000 5428400 4910000 3829900 6036500 316840 5917800 3677800 8798700 4945000 5862900 5307100 5309100 4746700 2 2 1 2 2 2 2 2 2 2 2 4113500 6472300 44881 5700400 3807800 8903600 4922800 5608100 5242000 5428400 4910000 3829900 6036500 316840 5917800 3677800 8798700 4945000 5862900 5307100 5309100 4746700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 629270000 629270000 0 19546 2545 17953 99706 120710;120711 120711 2 TTIEAIHGLMSQVIK Unmodified 1639.8967 0.89672749 2377 Q92905 COPS5 COP9 signalosome complex subunit 5 yes yes 0 0 0 0 By MS/MS 3 0 1 1 75.11 74.923 3 0.00033774 27179 20211116_3441_TMUAki_TMT10x_S_F3 77.746 45.248 2519500 4434400 15263 4945800 2667600 2468000 3140700 2070400 1820100 2429900 2971200 2346000 4139600 225180 4972400 2570600 2658200 3120100 2135900 1950300 2358300 2830600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2519500 4434400 15263 4945800 2667600 2468000 3140700 2070400 1820100 2429900 2971200 2346000 4139600 225180 4972400 2570600 2658200 3120100 2135900 1950300 2358300 2830600 1 1 1 1 1 1 1 1 1 1 1 595300000 0 595300000 19547 2377 17954 99707 120712 120712 1 TTIENIQLPHTLLSR Unmodified 1734.9628 0.96283322 911 P33991 MCM4 DNA replication licensing factor MCM4 yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 3.2 2 1 3 2 4 59.962 60.042 3 2.9815E-24 18119 20211116_3436_TMUAki_TMT10x_P_F8 192.4 149.85 25567000 43168000 278640 42135000 29341000 42145000 29702000 30489000 29690000 30341000 32818000 23807000 40277000 2378200 43058000 28156000 42672000 30109000 31583000 30316000 29639000 31562000 9 9 6 9 9 9 9 9 9 9 9 15416000 25154000 108490 24357000 18586000 31996000 19524000 17927000 17720000 18736000 19563000 14354000 23468000 1380700 25019000 17848000 31808000 19699000 18961000 18171000 18265000 18815000 5 5 3 5 5 5 5 5 5 5 5 10152000 18015000 170150 17778000 10755000 10149000 10178000 12563000 11971000 11606000 13255000 9453300 16809000 997480 18039000 10308000 10864000 10410000 12622000 12145000 11374000 12747000 4 4 3 4 4 4 4 4 4 4 4 4136900000 2172000000 1965000000 19548 911 17955 99708;99709;99710;99711;99712;99713 120713;120714;120715;120716;120717;120718;120719;120720;120721;120722 120716 10 TTIFSPEGR Unmodified 1006.5084 0.50835964 809 P25789 PSMA4 Proteasome subunit alpha type-4 yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 41.644 41.746 2 0.00017728 11150 20211116_3431_TMUAki_TMT10x_P_F4 99.802 74.63 11381000 18297000 217800 20319000 15245000 12694000 12825000 15291000 14524000 11982000 18002000 10598000 17081000 1192100 20472000 14570000 13460000 13188000 15317000 14825000 11839000 17258000 4 4 3 4 4 4 4 4 4 4 4 2532400 3805100 44931 4852500 6306400 5501900 3884900 2753000 2874200 2831300 3834200 2358300 3554500 304690 4886100 5988700 5503200 4036000 2940100 3002300 2761900 3669000 1 1 1 1 1 1 1 1 1 1 1 8848600 14492000 172870 15466000 8938800 7191900 8939600 12538000 11650000 9150700 14168000 8240100 13526000 887410 15586000 8580900 7957200 9151700 12377000 11823000 9076600 13589000 3 3 2 3 3 3 3 3 3 3 3 200610000 94601000 106010000 19549 809 17956 99714;99715;99716 120723;120724;120725;120726;120727 120723 5 TTIIWDAHTGEAK Unmodified 1441.7201 0.72014333 2741 Q9BZK7;O60907;O60907-2;Q9BQ87 TBL1XR1;TBL1X;TBL1Y F-box-like/WD repeat-containing protein TBL1XR1;F-box-like/WD repeat-containing protein TBL1X;F-box-like/WD repeat-containing protein TBL1Y yes no 0 0 0 0 By MS/MS 4 0 1 1 45.502 45.704 3 0.019796 13030 20211116_3442_TMUAki_TMT10x_S_F4 54.524 39.963 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19550 2741 17957 99717 120728 120728 1 TTIPEEEEEEEEAAGVVVEEELFHQQGTPR Unmodified 3410.5638 0.56376843 748 P20700 LMNB1 Lamin-B1 yes yes 0 0 0 0 By MS/MS By MS/MS 1.86 0.694 21 33 12 45 21 46.318 46.246 3;4 7.6093E-57 27382 20211116_3439_TMUAki_TMT10x_S_F1 199.87 197.46 59709000 102760000 811700 96821000 70513000 88263000 78153000 59495000 60545000 65495000 76860000 55598000 95861000 5413900 99064000 67831000 89798000 78328000 62121000 62942000 63718000 73639000 96 101 30 100 95 101 97 97 95 93 99 27072000 44096000 228340 41831000 24088000 48290000 30941000 25459000 26098000 28631000 33297000 25206000 41138000 2062000 42931000 23267000 48283000 30876000 27131000 27017000 27831000 31897000 61 66 13 65 61 66 62 62 60 58 64 32637000 58661000 583360 54990000 46425000 39973000 47212000 34037000 34446000 36864000 43563000 30392000 54723000 3351900 56134000 44564000 41515000 47452000 34990000 35925000 35886000 41742000 35 35 17 35 34 35 35 35 35 35 35 48736000000 24351000000 24386000000 19551 748 17958 99718;99719;99720;99721;99722;99723;99724;99725;99726;99727;99728;99729;99730;99731;99732;99733;99734;99735;99736;99737;99738;99739;99740;99741;99742;99743;99744;99745;99746;99747;99748;99749;99750;99751;99752;99753;99754;99755;99756;99757;99758;99759;99760;99761;99762;99763;99764;99765;99766;99767;99768;99769;99770;99771;99772;99773;99774;99775;99776;99777;99778;99779;99780;99781;99782;99783 120729;120730;120731;120732;120733;120734;120735;120736;120737;120738;120739;120740;120741;120742;120743;120744;120745;120746;120747;120748;120749;120750;120751;120752;120753;120754;120755;120756;120757;120758;120759;120760;120761;120762;120763;120764;120765;120766;120767;120768;120769;120770;120771;120772;120773;120774;120775;120776;120777;120778;120779;120780;120781;120782;120783;120784;120785;120786;120787;120788;120789;120790;120791;120792;120793;120794;120795;120796;120797;120798;120799;120800;120801;120802;120803;120804;120805;120806;120807;120808;120809;120810;120811;120812;120813;120814;120815;120816;120817;120818;120819;120820;120821;120822;120823;120824;120825;120826;120827;120828;120829;120830;120831 120800 103 TTITMAHLLAAR Oxidation (M) 1313.7126 0.71255553 1901 Q52LJ0;Q52LJ0-1 FAM98B Protein FAM98B yes no 0 0 1 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 37.081 37.025 3 2.7291E-07 10829 20211116_3439_TMUAki_TMT10x_S_F1 121.58 96.799 4156900 7024100 20012 7535700 8117600 7411500 5098300 5694600 6132100 5049700 6340700 3870700 6556200 319470 7649600 7708800 7519400 5361300 5857200 6200600 4958400 6110100 6 6 3 6 6 6 6 6 6 6 6 2161000 3471800 11079 3969600 6400000 5668400 3146400 3246800 3286700 2642200 3429400 2012100 3241400 248270 4039900 6055500 5615400 3366000 3405300 3342500 2605400 3303800 3 3 2 3 3 3 3 3 3 3 3 1996000 3552300 8932.7 3566100 1717600 1743000 1951900 2447800 2845500 2407600 2911200 1858500 3314800 71201 3609800 1653300 1904000 1995300 2452000 2858000 2353000 2806300 3 3 1 3 3 3 3 3 3 3 3 421670000 272410000 149260000 19552 1901 17959 99784;99785;99786;99787 120832;120833;120834;120835;120836;120837 120835 2502 6 TTITMAHLLAAR Unmodified 1297.7176 0.71764091 1901 Q52LJ0;Q52LJ0-1 FAM98B Protein FAM98B yes no 0 0 0 0 By MS/MS By MS/MS 3.25 0.433 3 1 1 3 50.427 50.312 3 1.2085E-16 16178 20211116_3430_TMUAki_TMT10x_P_F3 181.66 143.57 1203600 1854400 5426.5 2186600 959850 833650 951980 1216900 1295800 1091900 1517600 1120700 1731600 101430 2187000 920480 941330 976690 1214100 1311100 1071500 1457100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1203600 1854400 5426.5 2186600 959850 833650 951980 1216900 1295800 1091900 1517600 1120700 1731600 101430 2187000 920480 941330 976690 1214100 1311100 1071500 1457100 1 1 1 1 1 1 1 1 1 1 1 258420000 0 258420000 19553 1901 17959 99788;99789;99790;99791 120838;120839;120840 120838 3 TTITMAHLLAAREDLSK Oxidation (M) 1885.9931 0.99314707 1901 Q52LJ0;Q52LJ0-1 FAM98B Protein FAM98B yes no 0 0 1 1 By MS/MS 7.5 0.5 1 1 2 45.274 45.498 4 0.00012072 13983 20211116_3446_TMUAki_TMT10x_S_F7 79.97 60.131 3147200 5358900 42174 5750000 4228100 3158100 2803600 6628200 5907500 4891900 5406100 2930700 5001900 315370 5799500 4020800 3455100 3014400 6512000 5856200 4849200 5230600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3147200 5358900 42174 5750000 4228100 3158100 2803600 6628200 5907500 4891900 5406100 2930700 5001900 315370 5799500 4020800 3455100 3014400 6512000 5856200 4849200 5230600 2 2 2 2 2 2 2 2 2 2 2 526090000 0 526090000 19554 1901 17960 99792;99793 120841;120842 120841 2502 2 TTITTTTTSSSGLGSPMIVGSPR Oxidation (M) 2267.1315 0.13149104 2551 Q96S97 MYADM Myeloid-associated differentiation marker yes yes 0 0 1 0 By MS/MS By MS/MS 8 0 2 1 1 49.537 49.533 3 2.1061E-15 13991 20211116_3436_TMUAki_TMT10x_P_F8 126.26 113.06 1603700 3000800 33160 3021700 2649700 3164600 1997500 2834200 2564300 2473500 2703300 1493500 2800100 176100 3083300 2526100 3207700 2077800 2887500 2588800 2430600 2603500 3 3 2 3 3 3 3 3 3 3 3 1031900 1974000 33160 1940400 2084600 2592500 1474900 1751700 1611400 1579600 1702000 961080 1841800 131200 1991700 1985500 2581900 1532200 1818300 1636500 1549800 1639100 2 2 2 2 2 2 2 2 2 2 2 571790 1026800 0 1081300 565030 572160 522630 1082500 952890 893850 1001300 532370 958300 44902 1091600 540550 625750 545660 1069200 952290 880750 964410 1 1 0 1 1 1 1 1 1 1 1 216750000 110250000 106500000 19555 2551 17961 99794;99795 120843;120844;120845 120844 2795 3 TTIVIAHR Unmodified 909.5396 0.53960019 550 P08183;P08183-2;P21439;P21439-3;P21439-2 ABCB1;ABCB4 Multidrug resistance protein 1;Multidrug resistance protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 30.472 30.538 3 0.00043059 8145 20211116_3439_TMUAki_TMT10x_S_F1 127.12 82.723 86277 150980 0 128520 109760 79009 105500 91262 81216 98925 113610 80329 140800 7062 131950 105110 83818 106480 92400 84835 96299 108590 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 86277 150980 0 128520 109760 79009 105500 91262 81216 98925 113610 80329 140800 7062 131950 105110 83818 106480 92400 84835 96299 108590 1 1 0 1 1 1 1 1 1 1 1 13609000 0 13609000 19556 550 17962 99796;99797 120846;120847 120847 2 TTIVICCSPSSYNESETK Unmodified 2074.9187 0.91872108 906 P33176 KIF5B Kinesin-1 heavy chain yes yes 0 0 0 0 By MS/MS By MS/MS 5.25 0.829 1 1 2 1 3 51.018 51.163 3 6.3922E-26 14013 20211116_3444_TMUAki_TMT10x_S_F5 179.81 170.28 7654200 13416000 103280 14308000 8095100 6878200 6568400 9535800 8562200 8774800 10263000 7127300 12522000 712000 14422000 7728200 7525000 6804200 9538400 8683700 8601300 9847900 5 5 4 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7654200 13416000 103280 14308000 8095100 6878200 6568400 9535800 8562200 8774800 10263000 7127300 12522000 712000 14422000 7728200 7525000 6804200 9538400 8683700 8601300 9847900 5 5 4 5 5 5 5 5 5 5 5 815020000 0 815020000 19557 906 17963 99798;99799;99800;99801 120848;120849;120850;120851;120852;120853 120850 6 TTIVICCSPSVFNEAETK Unmodified 2054.9653 0.96527734 262 O60282;O60282-2 KIF5C Kinesin heavy chain isoform 5C yes no 0 0 0 0 By MS/MS 6 0 1 1 65.18 65.135 3 3.2986E-12 20030 20211116_3445_TMUAki_TMT10x_S_F6 130.64 112.5 3712100 6590200 13689 6413200 5085600 4027500 4128200 4295700 3600500 4483200 4908400 3456000 6148700 295170 6519400 4850200 4256100 4221100 4359700 3732400 4370800 4694500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3712100 6590200 13689 6413200 5085600 4027500 4128200 4295700 3600500 4483200 4908400 3456000 6148700 295170 6519400 4850200 4256100 4221100 4359700 3732400 4370800 4694500 2 2 1 2 2 2 2 2 2 2 2 674750000 0 674750000 19558 262 17964 99802 120854;120855 120854 2 TTKPYPADIVVQFK Unmodified 1605.8766 0.87664397 1570 Q12860;Q12860-2;Q12860-3 CNTN1 Contactin-1 yes no 0 0 0 1 By MS/MS 2 0 1 1 61.763 61.484 3 9.0068E-05 20302 20211116_3429_TMUAki_TMT10x_P_F2 93.51 72.847 11362000 17285000 89864 16666000 11775000 18035000 11538000 11760000 10750000 10510000 14718000 10580000 16127000 1027000 17066000 11290000 18148000 11691000 12236000 11112000 10316000 14075000 2 2 1 2 2 2 2 2 2 2 2 11362000 17285000 89864 16666000 11775000 18035000 11538000 11760000 10750000 10510000 14718000 10580000 16127000 1027000 17066000 11290000 18148000 11691000 12236000 11112000 10316000 14075000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 650260000 650260000 0 19559 1570 17965 99803 120856;120857 120856 2 TTKQEPMLFALAICSQCSDISTK Oxidation (M) 2644.2547 0.25465942 602 P10155;P10155-5;P10155-3;P10155-4;P10155-2 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes no 0 0 1 1 By MS/MS 8 0 1 1 67.292 67.182 3 2.1993E-08 20605 20211116_3447_TMUAki_TMT10x_S_F8 96.181 83.985 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19560 602 17966 99804 120858 120858 585 1 TTKTPEDGDYSYEIIEK Unmodified 1987.9262 0.92623252 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 1 By MS/MS By MS/MS 4 0.707 1 2 1 3 1 52.096 52.175 3 2.1401E-21 15246 20211116_3431_TMUAki_TMT10x_P_F4 163.35 136.2 15336000 25995000 20753 25680000 38938000 45379000 24398000 31712000 34723000 25375000 27073000 14277000 24255000 1401800 26515000 36957000 44707000 25828000 32743000 34602000 25044000 26353000 6 6 2 6 6 6 6 6 6 6 6 12293000 20424000 6003.6 20522000 35832000 42664000 22493000 25050000 27412000 20095000 21008000 11444000 19058000 1134900 21260000 34008000 41702000 23666000 26210000 27444000 19830000 20464000 5 5 1 5 5 5 5 5 5 5 5 3042800 5570600 14750 5158100 3105900 2715300 1904400 6661500 7311600 5280300 6064900 2833300 5196400 266900 5254700 2948700 3005600 2161900 6532400 7157500 5213900 5889200 1 1 1 1 1 1 1 1 1 1 1 1857600000 1438000000 419550000 19561 1057 17967 99805;99806;99807;99808 120859;120860;120861;120862;120863;120864 120860 6 TTLAHVIAR Unmodified 980.57671 0.57671398 2305 Q8WVB6;Q8WVB6-2 CHTF18 Chromosome transmission fidelity protein 18 homolog yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 33.369 33.375 3 0.0048247 9294 20211116_3439_TMUAki_TMT10x_S_F1 64.841 45.57 461140 763570 13080 807610 732340 668410 562630 490260 474350 461920 612900 429460 712660 54220 818700 698720 685510 576840 506610 491350 452310 586950 2 2 2 2 2 2 2 2 2 2 2 229380 354920 8461.7 365350 475750 436740 284510 241660 217920 220790 294970 213640 331210 30354 373050 451880 436140 296530 254930 227350 216490 282160 1 1 1 1 1 1 1 1 1 1 1 231760 408650 4618 442250 256590 231670 278120 248600 256430 241140 317930 215820 381440 23866 445650 246850 249380 280310 251680 264000 235810 304790 1 1 1 1 1 1 1 1 1 1 1 19955000 7375500 12580000 19562 2305 17968 99809;99810 120865;120866 120866 2 TTLEVLQLFPINIK Unmodified 1627.9549 0.95489429 1939 Q5T4S7;Q5T4S7-3;Q5T4S7-4;Q5T4S7-2;Q5T4S7-5 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 0 0 By matching By MS/MS 3 0 2 1 1 81.134 81.084 3 0.01186 29683 20211116_3441_TMUAki_TMT10x_S_F3 53.377 28.524 4088100 7021200 0 7415500 4356900 3047200 5008100 2168800 2586400 2384600 4178700 3806100 6553000 298080 7471800 4191100 3354000 4970900 2255900 2793700 2320000 3981700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4088100 7021200 0 7415500 4356900 3047200 5008100 2168800 2586400 2384600 4178700 3806100 6553000 298080 7471800 4191100 3354000 4970900 2255900 2793700 2320000 3981700 1 1 0 1 1 1 1 1 1 1 1 548790000 356400000 192390000 19563 1939 17969 99811;99812 120867 120867 1 TTLLPGLLK Unmodified 954.61137 0.61136815 2941 Q9NSD9;Q9NSD9-2 FARSB Phenylalanine--tRNA ligase beta subunit yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 69.329 68.992 2 3.0778E-05 23886 20211116_3430_TMUAki_TMT10x_P_F3 109.21 77.842 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19564 2941 17970 99813;99814;99815 120868;120869;120870 120869 3 TTLPERPLTEVK Unmodified 1382.7769 0.77692993 2540 Q96QC0 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 yes yes 0 0 0 1 By MS/MS 6 0 1 1 41.348 41.377 3 0.031008 9993 20211116_3434_TMUAki_TMT10x_P_F6 55.291 36.511 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19565 2540 17971 99816 120871 120871 1 TTLPTFQSPEFSVTR Unmodified 1709.8625 0.86245047 3330 Q9Y5X3 SNX5 Sorting nexin-5 yes yes 0 0 0 0 By MS/MS 8 0 1 1 64.528 64.699 3 1.5269E-19 20101 20211116_3436_TMUAki_TMT10x_P_F8 168.67 149.43 2427300 3812400 28442 3310700 2851400 4786700 2651200 2764500 2602300 2860100 2621500 2260300 3555500 233690 3435000 2730700 4739900 2698200 2915700 2650300 2789400 2528200 1 1 1 1 1 1 1 1 1 1 1 2427300 3812400 28442 3310700 2851400 4786700 2651200 2764500 2602300 2860100 2621500 2260300 3555500 233690 3435000 2730700 4739900 2698200 2915700 2650300 2789400 2528200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 561620000 561620000 0 19566 3330 17972 99817 120872 120872 1 TTLQVDTLNAELAAER Unmodified 1743.9003 0.90029254 935 P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH10 Myosin-10 yes no 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 2 4 4 5 5 60.756 60.571 2;3 7.3215E-142 18722 20211116_3431_TMUAki_TMT10x_P_F4 402 348.43 33313000 54298000 2119600 59913000 47956000 69446000 36288000 43036000 39692000 40391000 46290000 31033000 50687000 4874200 60867000 45813000 69566000 37524000 45010000 40465000 39557000 44450000 10 10 7 10 10 10 10 10 10 10 10 22351000 35694000 1966000 41596000 36673000 59701000 25699000 31234000 27905000 28630000 32226000 20826000 33328000 3838800 42289000 35004000 59063000 26709000 33115000 28445000 28069000 30954000 6 6 4 6 6 6 6 6 6 6 6 10962000 18604000 153530 18317000 11283000 9745700 10589000 11802000 11787000 11760000 14064000 10208000 17358000 1035400 18578000 10809000 10503000 10814000 11895000 12020000 11488000 13496000 4 4 3 4 4 4 4 4 4 4 4 7610400000 4054400000 3556000000 19567 935 17973 99818;99819;99820;99821;99822;99823;99824;99825;99826;99827 120873;120874;120875;120876;120877;120878;120879;120880;120881;120882;120883 120877 11 TTLTAAITK Unmodified 918.5386 0.53859714 1097 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 6 2.92 1 1 2 1 3 46.992 46.928 2 8.7382E-08 12364 20211116_3447_TMUAki_TMT10x_S_F8 211.48 158.31 10347000 17255000 87553 14804000 11903000 11566000 9419100 8930600 8744000 7863400 12130000 9635000 16092000 955130 15227000 11356000 11923000 9663200 9181100 9045200 7723800 11596000 3 3 2 3 3 3 3 3 3 3 3 6060900 9614200 83666 8159800 6419100 7098400 4956100 5172400 4939000 4558700 7012800 5643900 8965600 585480 8411200 6123300 7253600 5103100 5337800 5098900 4477500 6700800 1 1 1 1 1 1 1 1 1 1 1 4286400 7640800 3887.2 6644200 5484000 4467800 4463000 3758200 3805000 3304700 5117000 3991000 7126000 369640 6816000 5232500 4669800 4560000 3843300 3946300 3246200 4895600 2 2 1 2 2 2 2 2 2 2 2 488700000 215610000 273090000 19568 1097 17974 99828;99829;99830;99831 120884;120885;120886;120887 120887 4 TTLVIMER Oxidation (M) 977.52157 0.52156686 1739 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 1 0 By MS/MS By MS/MS 4.38 1.32 1 1 2 2 2 3 5 37.593 37.61 2 0.011619 9592 20211116_3431_TMUAki_TMT10x_P_F4 87.754 62.304 12678000 19610000 46505 20456000 17105000 18099000 13576000 13138000 12912000 13228000 16288000 11805000 18302000 1123000 20774000 16313000 18472000 13935000 13611000 13285000 12916000 15608000 7 7 4 7 7 7 7 7 7 7 7 6416400 9874800 0 9872900 10304000 11593000 6721200 6458500 6165100 6612200 8046600 5974200 9214200 571280 10098000 9789100 11589000 6987700 6830300 6363000 6451500 7704000 2 2 0 2 2 2 2 2 2 2 2 6262000 9735600 46505 10583000 6801200 6505900 6855200 6679100 6747300 6616200 8241500 5830700 9087500 551700 10676000 6524300 6883200 6947300 6780300 6921900 6464300 7904000 5 5 4 5 5 5 5 5 5 5 5 1537200000 973770000 563440000 19569 1739 17975 99832;99833;99834;99835;99836;99837;99838;99839 120888;120889;120890;120891;120892;120893;120894 120888 2346 7 TTNAGPLHPYWPQHLR Acetyl (Protein N-term) 1928.9646 0.96456455 1773 Q15125 EBP 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase yes yes 1 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 48.615 48.612 3 2.8085E-08 13599 20211116_3436_TMUAki_TMT10x_P_F8 114.56 103.35 6988000 12503000 83472 13597000 9137400 10701000 7777200 8875200 8900000 8287700 9821600 6507200 11671000 687250 13750000 8732200 11039000 7994600 9098300 9037800 8118500 9446000 6 6 6 6 6 6 6 6 6 6 6 2876200 4985000 50781 5645200 5057900 7007700 4118000 3746400 3819800 3297900 4190100 2678400 4654000 316340 5732800 4829200 6981600 4217000 3960200 3912200 3239400 4030600 3 3 3 3 3 3 3 3 3 3 3 4111800 7518500 32691 7951500 4079500 3693600 3659200 5128800 5080200 4989900 5631500 3828700 7017200 370910 8017500 3903000 4057600 3777600 5138000 5125600 4879100 5415500 3 3 3 3 3 3 3 3 3 3 3 1583500000 783260000 800250000 19570 1773 17976 99840;99841 120895;120896;120897;120898;120899;120900 120897 6 TTNFAGILSQGLR Unmodified 1376.7412 0.74121312 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.82 0.936 1 3 4 3 5 6 67.505 67.239 2;3 1.7611E-22 24152 20211116_3441_TMUAki_TMT10x_S_F3 206.21 141.15 40825000 73005000 430370 68361000 55333000 64477000 48300000 61804000 54719000 54667000 62531000 38013000 68104000 3729600 70009000 52889000 65864000 49559000 62759000 55664000 53685000 60080000 10 10 6 10 10 10 10 10 10 10 10 15654000 26002000 90565 23631000 20736000 35209000 20749000 20631000 18816000 20004000 21824000 14576000 24254000 1385400 24448000 19884000 34827000 20986000 21693000 19333000 19562000 20959000 4 4 2 4 4 4 4 4 4 4 4 25170000 47003000 339800 44729000 34598000 29268000 27551000 41173000 35904000 34664000 40707000 23437000 43850000 2344300 45561000 33005000 31038000 28573000 41066000 36331000 34122000 39120000 6 6 4 6 6 6 6 6 6 6 6 10083000000 5213700000 4869000000 19571 586 17977 99842;99843;99844;99845;99846;99847;99848;99849;99850;99851;99852 120901;120902;120903;120904;120905;120906;120907;120908;120909;120910;120911;120912;120913 120908 13 TTNVLGAVNKPLSSAGK Unmodified 1655.9206 0.92063405 2945 Q9NTI5;Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 0 0 0 1 By MS/MS 3 0 1 1 50.442 50.342 3 2.2725E-21 16170 20211116_3430_TMUAki_TMT10x_P_F3 162.33 133.7 3820100 5925000 59555 7795700 16315000 15301000 7343500 9054900 9933200 6404600 7877600 3557300 5535600 545320 7933000 15422000 14985000 7998100 9442300 9919000 6364300 7662800 2 2 1 2 2 2 2 2 2 2 2 3820100 5925000 59555 7795700 16315000 15301000 7343500 9054900 9933200 6404600 7877600 3557300 5535600 545320 7933000 15422000 14985000 7998100 9442300 9919000 6364300 7662800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 311900000 311900000 0 19572 2945 17978 99853 120914;120915 120914 2 TTPDVIFVFGFR Unmodified 1397.7343 0.73433683 1371 P62847;P62847-2;P62847-3;P62847-4 RPS24 40S ribosomal protein S24 yes no 0 0 0 0 By matching By MS/MS 3 0 2 1 1 79.677 79.615 2 1.2712E-24 29053 20211116_3441_TMUAki_TMT10x_S_F3 254.83 209.15 3317800 5483800 18742 4807600 3978700 3118000 3829800 3019100 2527700 3153100 4052700 3089400 5114400 301790 4927100 3812300 3278400 3852200 3078600 2682600 3074000 3862300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3317800 5483800 18742 4807600 3978700 3118000 3829800 3019100 2527700 3153100 4052700 3089400 5114400 301790 4927100 3812300 3278400 3852200 3078600 2682600 3074000 3862300 1 1 1 1 1 1 1 1 1 1 1 857480000 418520000 438960000 19573 1371 17979 99854;99855 120916 120916 1 TTPEYVFHCQSAVMSATFAK Oxidation (M) 2290.0398 0.039839264 1629 Q13409;Q13409-3;Q13409-2;Q13409-6;Q13409-7;Q13409-5 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 yes no 0 0 1 0 By MS/MS 8 0 1 1 54.737 54.669 3 2.8608E-05 15513 20211116_3447_TMUAki_TMT10x_S_F8 79.568 70.163 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19574 1629 17980 99856 120917 120917 2179 1 TTPNSGDVQVTEDAVR Unmodified 1687.8013 0.80130678 932 P35269 GTF2F1 General transcription factor IIF subunit 1 yes yes 0 0 0 0 By MS/MS 2 0 1 1 38.021 37.781 3 2.0155E-07 10615 20211116_3429_TMUAki_TMT10x_P_F2 106.36 86.347 341630 505540 0 674320 891050 836440 554040 479930 515320 409350 520440 318090 472350 35928 678420 845910 834100 578410 503840 526120 402700 501890 1 1 0 1 1 1 1 1 1 1 1 341630 505540 0 674320 891050 836440 554040 479930 515320 409350 520440 318090 472350 35928 678420 845910 834100 578410 503840 526120 402700 501890 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 62538000 62538000 0 19575 932 17981 99857 120918 120918 1 TTPNSGDVQVTEDAVRR Unmodified 1843.9024 0.90241781 932 P35269 GTF2F1 General transcription factor IIF subunit 1 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 34.014 33.868 3 1.0309E-52 9004 20211116_3429_TMUAki_TMT10x_P_F2 258.38 225.82 1364500 2036500 12334 2576300 3283800 2770500 1742200 2025900 2454500 1404500 2294100 1270600 1902300 115040 2593000 3110600 2793700 1869800 2078800 2460100 1397300 2218000 4 4 2 4 4 4 4 4 4 4 4 924220 1356200 12334 1666800 2904300 2462300 1413400 1353900 1549300 1028800 1489700 860630 1266600 115040 1690400 2748000 2434500 1515800 1422700 1568100 1018200 1438900 3 3 2 3 3 3 3 3 3 3 3 440260 680320 0 909500 379510 308190 328780 672040 905190 375690 804420 409920 635670 0 902660 362620 359230 353990 656050 892070 379120 779110 1 1 0 1 1 1 1 1 1 1 1 351680000 224290000 127390000 19576 932 17982 99858;99859;99860 120919;120920;120921;120922 120919 4 TTPSVVAFTADGER Unmodified 1449.71 0.70997257 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 1.12 4 4 4 4 8 8 48.917 48.909 2;3 4.2203E-62 13106 20211116_3444_TMUAki_TMT10x_S_F5 315.67 287.5 54495000 89011000 167210 100980000 75907000 79256000 53517000 89776000 91112000 79361000 85998000 50738000 83101000 4273400 101850000 72203000 82317000 56619000 90435000 90864000 77938000 83117000 22 22 3 22 22 22 22 22 22 22 22 21304000 32778000 34879 37444000 48336000 53990000 30631000 32700000 33427000 28588000 31666000 19834000 30603000 1774400 38117000 45886000 53502000 32083000 34198000 33821000 28090000 30602000 11 11 2 11 11 11 11 11 11 11 11 33191000 56233000 132330 63537000 27571000 25267000 22886000 57076000 57685000 50774000 54332000 30904000 52498000 2499000 63730000 26317000 28815000 24537000 56237000 57043000 49848000 52516000 11 11 1 11 11 11 11 11 11 11 11 25993000000 13672000000 12321000000 19577 972 17983 99861;99862;99863;99864;99865;99866;99867;99868;99869;99870;99871;99872;99873;99874;99875;99876 120923;120924;120925;120926;120927;120928;120929;120930;120931;120932;120933;120934;120935;120936;120937;120938;120939;120940;120941;120942;120943;120944;120945 120944 23 TTPSYVAFTDTER Unmodified 1486.694 0.69398816 615;596;701 P0DMV8;P0DMV9;P0DMV8-2;P11142;P11142-2;P54652;P17066;P48741 HSPA1A;HSPA1B;HSPA8;HSPA2;HSPA6;HSPA7 Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 no no 0 0 0 0 By MS/MS By MS/MS 4.27 1.95 2 4 4 4 4 4 3 1 13 13 47.906 47.976 2;3 1.153E-53 12672 20211116_3444_TMUAki_TMT10x_S_F5 308.6 269.58 93226000 147210000 1167400 179830000 154780000 160630000 103710000 130070000 138730000 111790000 138720000 86801000 137490000 7852200 180860000 147120000 164140000 108950000 133240000 139600000 109930000 133820000 32 32 13 32 32 32 32 32 32 32 32 55035000 84854000 1094500 103430000 124260000 133350000 77749000 74455000 80661000 65963000 80858000 51246000 79247000 5376500 104650000 118000000 132670000 81386000 78418000 81938000 64773000 77994000 18 18 10 18 18 18 18 18 18 18 18 38190000 62357000 72919 76402000 30528000 27285000 25958000 55611000 58073000 45826000 57860000 35555000 58238000 2475800 76217000 29126000 31462000 27563000 54819000 57666000 45159000 55822000 14 14 3 14 14 14 14 14 14 14 14 119990000000 67725000000 52265000000 19578 596;615;701 17984 99877;99878;99879;99880;99881;99882;99883;99884;99885;99886;99887;99888;99889;99890;99891;99892;99893;99894;99895;99896;99897;99898;99899;99900;99901;99902 120946;120947;120948;120949;120950;120951;120952;120953;120954;120955;120956;120957;120958;120959;120960;120961;120962;120963;120964;120965;120966;120967;120968;120969;120970;120971;120972;120973;120974;120975;120976;120977;120978;120979 120975 34 TTPYQIACGISQGLADNTVIAK Unmodified 2320.1733 0.17329628 819 P26639 TARS Threonine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 By MS/MS By MS/MS 2.36 1.72 4 6 3 1 6 8 67.212 67.171 2;3 3.6919E-28 25701 20211116_3436_TMUAki_TMT10x_P_F8 179.41 160.09 36098000 61059000 147980 55145000 44952000 59496000 46165000 36950000 35563000 42760000 44486000 33609000 56952000 2797000 56740000 43112000 59836000 46435000 38880000 36960000 41522000 42637000 11 11 3 11 11 11 11 11 11 11 11 16317000 25919000 31379 24425000 15626000 34127000 19410000 16674000 16573000 19235000 20059000 15191000 24180000 1105600 25169000 15062000 33776000 19403000 17911000 17108000 18681000 19243000 4 4 1 4 4 4 4 4 4 4 4 19782000 35139000 116600 30720000 29327000 25369000 26754000 20276000 18990000 23524000 24426000 18418000 32772000 1691400 31571000 28050000 26060000 27032000 20969000 19852000 22841000 23395000 7 7 2 7 7 7 7 7 7 7 7 13732000000 8041500000 5690800000 19579 819 17985 99903;99904;99905;99906;99907;99908;99909;99910;99911;99912;99913;99914;99915;99916 120980;120981;120982;120983;120984;120985;120986;120987;120988;120989;120990;120991;120992;120993 120982 14 TTQIPQWCVEYMR Oxidation (M) 1726.7807 0.78071145 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 1 0 By MS/MS By MS/MS 7 0 4 2 2 55.253 55.88 2;3 0.0020168 18199 20211116_3446_TMUAki_TMT10x_S_F7 63.29 53.502 13639000 22939000 117190 22794000 16783000 20004000 16679000 13633000 11580000 13448000 17311000 12700000 21404000 1223500 23222000 16093000 20407000 16766000 14177000 12208000 13141000 16522000 5 5 4 5 5 5 5 5 5 5 5 7124000 11637000 42522 11541000 10481000 14567000 9740000 7214400 6654000 7310800 8828900 6633500 10858000 677280 11826000 10034000 14488000 9822900 7709000 6981500 7136200 8449600 3 3 3 3 3 3 3 3 3 3 3 6514800 11302000 74669 11253000 6301700 5436900 6939400 6418700 4926400 6136900 8482200 6066000 10546000 546210 11397000 6059000 5919600 6943300 6468100 5226000 6005200 8072400 2 2 1 2 2 2 2 2 2 2 2 2323500000 1340400000 983060000 19580 196 17986 99917;99918;99919;99920 120994;120995;120996;120997;120998 120997 152 5 TTQIPQWCVEYMR Unmodified 1710.7858 0.78579683 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 0 0 By MS/MS 8 0 1 1 62.726 62.731 2 6.2642E-22 18744 20211116_3447_TMUAki_TMT10x_S_F8 175.57 137.85 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19581 196 17986 99921 120999 120999 1 TTQIPQYLFEEGYTNK Unmodified 1930.9313 0.93125832 257 O60231 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 70.291 70.392 3 2.7817E-05 22256 20211116_3445_TMUAki_TMT10x_S_F6 88.19 69.115 8966800 15189000 74468 13774000 11178000 14260000 10975000 11640000 11030000 11315000 12334000 8349400 14167000 832580 14159000 10717000 14438000 11144000 11957000 11265000 11065000 11858000 3 3 2 3 3 3 3 3 3 3 3 3601700 6103100 61164 5440700 3725200 7571400 4422100 4567300 4705700 4345800 4639900 3354000 5692400 357340 5629000 3593100 7514300 4457900 4788700 4772500 4253500 4478000 1 1 1 1 1 1 1 1 1 1 1 5365100 9085700 13304 8333500 7453100 6688300 6552600 7072800 6324000 6969600 7694300 4995400 8475100 475250 8530000 7123800 6923800 6686600 7168600 6492200 6811100 7380000 2 2 1 2 2 2 2 2 2 2 2 1790300000 1251700000 538620000 19582 257 17987 99922;99923;99924;99925 121000;121001;121002;121003 121001 4 TTQITQYLAEAGYTSR Unmodified 1801.8846 0.88464248 1715 Q14562 DHX8 ATP-dependent RNA helicase DHX8 yes yes 0 0 0 0 By MS/MS 8 0 1 1 66.625 66.538 3 4.801E-08 20333 20211116_3447_TMUAki_TMT10x_S_F8 106.28 82.444 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19583 1715 17988 99926 121004 121004 1 TTQVPQFILDDFIQNDR Unmodified 2049.0167 0.016719282 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 By MS/MS By MS/MS 4.68 1.65 1 4 6 6 15 7 2 3 24 20 77.511 77.514 2;3 5.1001E-94 25823 20211116_3445_TMUAki_TMT10x_S_F6 352.27 323.2 71755000 119690000 370320 109780000 83863000 107630000 87265000 70157000 68115000 75221000 91099000 66807000 111640000 4635500 112660000 80467000 108930000 87746000 73374000 70948000 73256000 87169000 30 30 11 30 30 30 30 30 30 30 30 38969000 64106000 250760 58661000 38539000 69535000 43410000 38401000 36782000 40979000 49589000 36284000 59797000 2650000 60391000 37070000 69468000 43573000 40692000 38164000 39916000 47440000 14 14 4 14 14 14 14 14 14 14 14 32786000 55580000 119560 51120000 45323000 38092000 43855000 31756000 31332000 34242000 41510000 30524000 51845000 1985500 52271000 43397000 39467000 44173000 32682000 32784000 33340000 39728000 16 16 7 16 16 16 16 16 16 16 16 62615000000 30623000000 31992000000 19584 1546 17989 99927;99928;99929;99930;99931;99932;99933;99934;99935;99936;99937;99938;99939;99940;99941;99942;99943;99944;99945;99946;99947;99948;99949;99950;99951;99952;99953;99954;99955;99956;99957;99958;99959;99960;99961;99962;99963;99964;99965;99966;99967;99968;99969;99970 121005;121006;121007;121008;121009;121010;121011;121012;121013;121014;121015;121016;121017;121018;121019;121020;121021;121022;121023;121024;121025;121026;121027;121028;121029;121030;121031;121032;121033;121034;121035;121036;121037;121038;121039;121040;121041;121042;121043;121044;121045;121046;121047;121048;121049 121045 45 TTQVTQFILDNYIER Unmodified 1839.9367 0.93667805 2794 Q9H2U1;Q9H2U1-3;Q9H2U1-2 DHX36 ATP-dependent RNA helicase DHX36 yes no 0 0 0 0 By MS/MS 8 0 1 1 78.309 78.258 3 0.086073 25132 20211116_3447_TMUAki_TMT10x_S_F8 28.611 15.984 3294800 6085300 187770 5583300 4503300 4398100 4495700 3385400 2736800 3361600 4219200 3069200 5676400 465080 5713600 4329200 4530900 4506200 3492400 2913800 3284100 4024200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3294800 6085300 187770 5583300 4503300 4398100 4495700 3385400 2736800 3361600 4219200 3069200 5676400 465080 5713600 4329200 4530900 4506200 3492400 2913800 3284100 4024200 1 1 1 1 1 1 1 1 1 1 1 593190000 0 593190000 19585 2794 17990 99971 121050 121050 1 TTRKEQTADGVAVIPVLQR Unmodified 2081.1593 0.15930119 3157 Q9UKK9 NUDT5 ADP-sugar pyrophosphatase yes yes 0 0 0 2 By MS/MS By matching 8 0 2 1 1 43.297 43.39 4 4.7452E-08 11393 20211116_3436_TMUAki_TMT10x_P_F8 104.89 93.203 418730 830690 0 861260 1086000 1222700 731990 880880 908600 714210 828940 389810 775240 35144 881870 1031800 1215600 766470 907880 913790 704400 802120 1 1 0 1 1 1 1 1 1 1 1 418730 830690 0 861260 1086000 1222700 731990 880880 908600 714210 828940 389810 775240 35144 881870 1031800 1215600 766470 907880 913790 704400 802120 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 211920000 134080000 77842000 19586 3157 17991 99972;99973 121051 121051 1 TTSGALFPSLVPGSR Acetyl (Protein N-term) 1530.8042 0.80420731 1839 Q16186 ADRM1 Proteasomal ubiquitin receptor ADRM1 yes yes 1 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 78.146 78.124 2 1.2484E-09 25048 20211116_3447_TMUAki_TMT10x_S_F8 83.182 69.186 7483500 12483000 61222 11124000 8510300 11447000 8857200 7578000 7744500 7439000 9125000 6968000 11643000 650050 11449000 8169800 11555000 8931700 7895900 7976400 7271100 8759800 2 2 1 2 2 2 2 2 2 2 2 3676100 6563100 0 5577400 3537500 7227500 4314900 3625000 3789700 3485800 4464000 3422500 6120400 261010 5784200 3408700 7180100 4319800 3863300 3902300 3410200 4285400 1 1 0 1 1 1 1 1 1 1 1 3807400 5919700 61222 5546200 4972800 4219500 4542400 3953000 3954800 3953200 4661000 3545500 5522300 389040 5664500 4761000 4374400 4611800 4032600 4074100 3860900 4474400 1 1 1 1 1 1 1 1 1 1 1 2346700000 1103800000 1242800000 19587 1839 17992 99974;99975 121052;121053 121053 2 TTSPLEEEEREIK Unmodified 1559.7679 0.76788138 3160 Q9UKV3;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 0 0 0 1 By MS/MS By MS/MS 1.8 0.748 2 2 1 3 2 42.274 42.196 3 2.7794E-25 12630 20211116_3429_TMUAki_TMT10x_P_F2 219.35 163.12 4969100 7675300 55451 10917000 19921000 17949000 8797000 11686000 11860000 8012200 9861400 4626500 7174000 595460 11014000 18820000 17711000 9599600 12087000 11861000 7976500 9574800 5 5 2 5 5 5 5 5 5 5 5 4969100 7675300 55451 10917000 19921000 17949000 8797000 11686000 11860000 8012200 9861400 4626500 7174000 595460 11014000 18820000 17711000 9599600 12087000 11861000 7976500 9574800 5 5 2 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 377140000 377140000 0 19588 3160 17993 99976;99977;99978;99979;99980 121054;121055;121056;121057;121058;121059;121060 121057 7 TTSPPEVSGYSYEK Unmodified 1543.7042 0.70421849 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS 5 0.816 1 1 1 3 44.735 44.839 3 9.9511E-05 12574 20211116_3433_TMUAki_TMT10x_P_F5 88.282 72.391 3357000 5126900 66956 6223200 10060000 8898800 5174900 5157600 5304000 3951100 5593600 3126100 4788100 416500 6311300 9526300 8816400 5508500 5396600 5400600 3908500 5387000 2 2 1 2 2 2 2 2 2 2 2 3357000 5126900 66956 6223200 10060000 8898800 5174900 5157600 5304000 3951100 5593600 3126100 4788100 416500 6311300 9526300 8816400 5508500 5396600 5400600 3908500 5387000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 358260000 358260000 0 19589 1057 17994 99981;99982;99983 121061;121062 121061 2 TTSSAIYMNLASHIQPGTVNR Unmodified 2260.127 0.12701479 2325 Q8WXI9 GATAD2B Transcriptional repressor p66-beta yes yes 0 0 0 0 By MS/MS 3 0 2 2 58.76 58.35 3 1.9037E-26 20540 20211116_3441_TMUAki_TMT10x_S_F3 167.63 154.88 1030900 1758000 38933 1986800 1079300 963970 923550 1350200 1257600 1309400 1437200 960190 1641200 122430 1995400 1033300 1053800 955280 1352100 1271100 1280500 1380900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1030900 1758000 38933 1986800 1079300 963970 923550 1350200 1257600 1309400 1437200 960190 1641200 122430 1995400 1033300 1053800 955280 1352100 1271100 1280500 1380900 1 1 1 1 1 1 1 1 1 1 1 349210000 0 349210000 19590 2325 17995 99984;99985 121063;121064 121063 2 TTSSANNPNLMYQDECDRR Oxidation (M) 2286.9594 0.95935711 2368 Q92841;Q92841-3;Q92841-1;Q92841-2 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 1 1 By MS/MS By MS/MS 2.5 1.12 1 1 1 1 3 1 30.663 30.551 3 3.7842E-18 7730 20211116_3429_TMUAki_TMT10x_P_F2 155.96 146.78 255890 395130 8330.5 832980 1840100 709810 442430 349450 663550 225560 673540 238300 370330 48686 817010 1729600 722600 528700 369780 665730 225400 649430 3 3 2 3 3 3 3 3 3 3 3 158000 261860 8330.5 535540 1761800 648260 349950 217050 412340 150250 408580 147170 245370 43325 528690 1654300 643760 430730 240440 416620 149500 394250 2 2 2 2 2 2 2 2 2 2 2 97895 133260 0 297440 78318 61544 92473 132400 251210 75304 264960 91130 124960 5361.6 288320 75289 78840 97974 129330 249110 75898 255170 1 1 0 1 1 1 1 1 1 1 1 130070000 96637000 33429000 19591 2368 17996 99986;99987;99988;99989 121065;121066;121067 121065 2707 3 TTSSANNPNLMYQDECDRR Unmodified 2270.9644 0.96444249 2368 Q92841;Q92841-3;Q92841-1;Q92841-2 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 0 1 By MS/MS 4 0 1 1 33.202 33.228 3 3.5161E-12 7674 20211116_3431_TMUAki_TMT10x_P_F4 128.14 108.09 240540 343970 1221.6 686540 1388400 726630 442580 228240 306280 177670 433420 223980 322240 37158 676790 1307600 726570 494170 255700 322070 175600 414170 1 1 1 1 1 1 1 1 1 1 1 240540 343970 1221.6 686540 1388400 726630 442580 228240 306280 177670 433420 223980 322240 37158 676790 1307600 726570 494170 255700 322070 175600 414170 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 68758000 68758000 0 19592 2368 17996 99990 121068 121068 1 TTTGPPHLVPPQPLPR Unmodified 1706.9468 0.94678922 3202 Q9UNY4;Q9UNY4-2 TTF2 Transcription termination factor 2 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 42.999 42.901 3 0.00013254 13153 20211116_3439_TMUAki_TMT10x_S_F1 79.81 63.586 2701200 5213100 15689 5420900 6133400 7017500 3977800 5497200 5686900 4886600 5272000 2515000 4865100 260280 5539400 5826000 7016300 4200500 5647600 5695900 4797700 5098600 3 3 1 3 3 3 3 3 3 3 3 1663200 3456500 0 3480100 5148600 6058100 3183700 3551300 3761800 3188100 3535300 1548500 3225400 172590 3587200 4886400 5956300 3350000 3726400 3793700 3128600 3417300 1 1 0 1 1 1 1 1 1 1 1 1038000 1756500 15689 1940800 984780 959390 794150 1945800 1925000 1698500 1736800 966520 1639700 87683 1952300 939610 1060100 850520 1921200 1902200 1669100 1681200 2 2 1 2 2 2 2 2 2 2 2 153420000 99981000 53437000 19593 3202 17997 99991;99992 121069;121070;121071 121070 3 TTTHVPPELGQIMDSETFEK Oxidation (M) 2275.0678 0.067828154 363 O75844 ZMPSTE24 CAAX prenyl protease 1 homolog yes yes 0 0 1 0 By MS/MS 4 0 1 1 54.297 54.456 3 0.0027363 16201 20211116_3431_TMUAki_TMT10x_P_F4 60.062 45.753 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19594 363 17998 99993 121072 121072 283 1 TTTLSGTAPAAGVVPSR Unmodified 1584.8471 0.84713476 833 P27816;P27816-6;P27816-2;P27816-5;P27816-4 MAP4 Microtubule-associated protein 4 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 3 1 41.813 42.053 3 6.1298E-11 10852 20211116_3436_TMUAki_TMT10x_P_F8 125.98 111.04 2954800 5075800 77078 5473200 4748500 4839100 3523900 4480200 4373200 3678700 4378600 2751700 4737800 327950 5546000 4526000 4960800 3664800 4549300 4412000 3625800 4223700 4 4 3 4 4 4 4 4 4 4 4 1501400 2446200 30515 2709200 3363400 3497500 2162500 2292000 2185300 1844600 2238600 1398000 2283500 165010 2757100 3195700 3487300 2257000 2377800 2224100 1819900 2157800 2 2 1 2 2 2 2 2 2 2 2 1453400 2629600 46563 2763900 1385100 1341600 1361400 2188200 2187900 1834100 2140000 1353600 2454200 162940 2788900 1330300 1473500 1407800 2171500 2187900 1805900 2065800 2 2 2 2 2 2 2 2 2 2 2 251030000 175370000 75665000 19595 833 17999 99994;99995;99996;99997 121073;121074;121075;121076;121077 121075 5 TTTVNIGSISTADGSALVK Unmodified 1833.9684 0.96837211 2414 Q96B26 EXOSC8 Exosome complex component RRP43 yes yes 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 62.084 62.779 3 2.0748E-08 20497 20211116_3435_TMUAki_TMT10x_P_F7 105.77 78.745 2214100 4249100 59562 3945900 3532900 6027000 3807200 3581200 3140200 3420400 3516000 2062000 3963700 257550 4078000 3398000 5956500 3826800 3759800 3237100 3347200 3380100 1 1 1 1 1 1 1 1 1 1 1 2214100 4249100 59562 3945900 3532900 6027000 3807200 3581200 3140200 3420400 3516000 2062000 3963700 257550 4078000 3398000 5956500 3826800 3759800 3237100 3347200 3380100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 686440000 686440000 0 19596 2414 18001 99998;99999 121078;121079 121079 2 TTVISAVGTIVKK Unmodified 1315.8075 0.80750177 3122 Q9UHR5;Q9UHR5-2 SAP30BP SAP30-binding protein yes no 0 0 0 1 By MS/MS 4 0 1 1 58.892 59.023 3 3.3198E-12 18068 20211116_3431_TMUAki_TMT10x_P_F4 157.2 136.99 3898200 6167700 66561 6570300 6900800 9110600 5039700 5505000 5033100 4675300 5396000 3630100 5756600 427270 6712300 6574100 9043500 5209100 5754300 5133500 4600300 5194100 1 1 1 1 1 1 1 1 1 1 1 3898200 6167700 66561 6570300 6900800 9110600 5039700 5505000 5033100 4675300 5396000 3630100 5756600 427270 6712300 6574100 9043500 5209100 5754300 5133500 4600300 5194100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 475660000 475660000 0 19597 3122 18002 100000 121080 121080 1 TTVLAMDQVPR Oxidation (M) 1245.6387 0.63872189 1630 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 1 0 By MS/MS 4 0 1 1 36.499 36.631 2 0.0016041 9240 20211116_3442_TMUAki_TMT10x_S_F4 81.915 59.767 77394 105240 0 128930 68008 50467 65965 80727 87569 69037 98201 72048 98287 4711.9 128680 65056 56932 67687 80201 88519 67906 94401 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 77394 105240 0 128930 68008 50467 65965 80727 87569 69037 98201 72048 98287 4711.9 128680 65056 56932 67687 80201 88519 67906 94401 1 1 0 1 1 1 1 1 1 1 1 4933200 0 4933200 19598 1630 18003 100001 121081 121081 2180 1 TTVPEVEPPQDSHSRK Unmodified 1805.8908 0.89079049 995 P41219;P41219-2 PRPH Peripherin yes no 0 0 0 1 By MS/MS 4 0 1 1 31.949 31.979 4 1.3154E-10 7159 20211116_3431_TMUAki_TMT10x_P_F4 126.88 83.581 296470 479120 0 524760 876670 604580 410620 310180 424920 268560 394810 276040 447240 31998 533310 828830 604360 441320 328980 430590 264000 381790 1 1 0 1 1 1 1 1 1 1 1 296470 479120 0 524760 876670 604580 410620 310180 424920 268560 394810 276040 447240 31998 533310 828830 604360 441320 328980 430590 264000 381790 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72391000 72391000 0 19599 995 18004 100002 121082 121082 1 TTVVAQLK Unmodified 858.51747 0.51746776 1272 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E yes yes 0 0 0 0 By MS/MS 8 0 1 1 43.367 43.378 2 0.001025 10928 20211116_3447_TMUAki_TMT10x_S_F8 129.56 64.728 2094800 3685600 187.93 2862800 2585700 2530600 2219700 3466900 2968700 2770100 3147400 1950400 3436000 180720 2973700 2470100 2619500 2293900 3456800 2993700 2734100 3030700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2094800 3685600 187.93 2862800 2585700 2530600 2219700 3466900 2968700 2770100 3147400 1950400 3436000 180720 2973700 2470100 2619500 2293900 3456800 2993700 2734100 3030700 1 1 1 1 1 1 1 1 1 1 1 57341000 0 57341000 19600 1272 18005 100003 121083 121083 1 TTVVVHVDSK Acetyl (Protein N-term) 1125.603 0.60298831 3295 Q9Y4B6;Q9Y4B6-3;Q9Y4B6-2 VPRBP Protein VPRBP yes no 1 0 0 0 By MS/MS 3 0 1 1 38.427 38.469 2 0.0014874 11339 20211116_3430_TMUAki_TMT10x_P_F3 45.161 28.958 139180 185110 582.33 243850 264410 255810 157190 100660 109130 121830 169700 129590 172950 13836 244800 250870 256380 163560 110800 115270 118110 161830 1 1 1 1 1 1 1 1 1 1 1 139180 185110 582.33 243850 264410 255810 157190 100660 109130 121830 169700 129590 172950 13836 244800 250870 256380 163560 110800 115270 118110 161830 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4498500 4498500 0 19601 3295 18006 100004 121084 121084 1 TTYDSSLSSYTVPLEK Unmodified 1789.8622 0.8621757 2315 Q8WWM7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7-3;Q8WWM7-7 ATXN2L Ataxin-2-like protein yes no 0 0 0 0 By matching By MS/MS 5.5 0.5 1 1 1 1 63.98 64.036 3 7.6461E-08 19594 20211116_3445_TMUAki_TMT10x_S_F6 115.82 96.238 8262600 13871000 428700 13831000 7883800 7178600 7641500 10051000 9837500 9486300 10493000 7696500 12943000 1079300 14013000 7579200 7787900 7831700 10057000 9935200 9288100 10102000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8262600 13871000 428700 13831000 7883800 7178600 7641500 10051000 9837500 9486300 10493000 7696500 12943000 1079300 14013000 7579200 7787900 7831700 10057000 9935200 9288100 10102000 2 2 2 2 2 2 2 2 2 2 2 891090000 525960000 365130000 19602 2315 18007 100005;100006 121085;121086 121086 2 TTYLEFIQQNEERDGVR Acetyl (Protein N-term) 2139.0233 0.023261223 1808 Q15436 SEC23A Protein transport protein Sec23A yes yes 1 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 73.06 73.006 2 1.9094E-47 23377 20211116_3428_TMUAki_TMT10x_P_F1 168.98 144.47 3355900 5397800 150050 5267800 3926300 5045200 4090400 4010000 3636600 3967900 4254600 3125800 5036200 426060 5379900 3778000 5130200 4126400 4128100 3741400 3877000 4085200 4 4 4 4 4 4 4 4 4 4 4 1663400 2256800 21576 2363900 1456400 3007200 1840500 1840300 1632000 1724300 1903900 1548900 2106300 155120 2413700 1407400 2997600 1840400 1926500 1679000 1688800 1828200 2 2 2 2 2 2 2 2 2 2 2 1692500 3140900 128480 2903900 2469900 2038000 2249800 2169700 2004700 2243600 2350800 1576900 2929900 270950 2966200 2370500 2132500 2286000 2201600 2062400 2188200 2257000 2 2 2 2 2 2 2 2 2 2 2 1503200000 1009000000 494230000 19603 1808 18008 100007;100008 121087;121088;121089;121090 121088 4 TTYLVLDEADR Unmodified 1294.6405 0.64049603 710 P17844;P17844-2 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 53.546 53.417 2 1.5172E-24 18476 20211116_3441_TMUAki_TMT10x_S_F3 256.91 208.12 36434000 61993000 1772 62574000 44537000 52963000 36480000 42268000 43292000 39162000 47946000 33921000 57849000 2851100 63651000 42483000 54308000 37636000 43422000 43909000 38375000 46108000 9 9 1 9 9 9 9 9 9 9 9 16876000 27953000 1772 28293000 27222000 36094000 20066000 18371000 19666000 17794000 21324000 15713000 26084000 1474500 28956000 25918000 35891000 20716000 19556000 20083000 17403000 20519000 4 4 1 4 4 4 4 4 4 4 4 19557000 34041000 0 34281000 17314000 16868000 16414000 23897000 23626000 21367000 26622000 18208000 31765000 1376600 34695000 16565000 18416000 16920000 23866000 23826000 20973000 25589000 5 5 0 5 5 5 5 5 5 5 5 8169900000 4692400000 3477500000 19604 710 18009 100009;100010;100011;100012;100013;100014;100015;100016 121091;121092;121093;121094;121095;121096;121097;121098;121099 121098 9 TTYQALPCLPSMYGYPNR Oxidation (M) 2146.9816 0.9815961 1207 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 1 0 By MS/MS By matching 1.5 0.5 1 1 1 1 62.074 61.955 3 0.00013204 18888 20211116_3428_TMUAki_TMT10x_P_F1 72.421 65.363 1440400 2424400 0 2128900 1720900 3314800 1902600 1936500 1809600 2063100 1926600 1340900 2261100 89135 2210500 1652400 3272800 1917500 2042300 1849200 2009700 1854900 1 1 0 1 1 1 1 1 1 1 1 1440400 2424400 0 2128900 1720900 3314800 1902600 1936500 1809600 2063100 1926600 1340900 2261100 89135 2210500 1652400 3272800 1917500 2042300 1849200 2009700 1854900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1280800000 527200000 753640000 19605 1207 18010 100017;100018 121100 121100 1624 1 TVAGGAWTYNTTSAVTVK Unmodified 1825.921 0.92102798 1313 P61513 RPL37A 60S ribosomal protein L37a yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.28 3 1 1 3 5 3 58.063 58.113 2;3 4.4526E-90 17328 20211116_3428_TMUAki_TMT10x_P_F1 323.66 300.28 54097000 94388000 717760 97242000 65493000 76279000 60316000 62172000 65878000 65606000 73070000 50374000 88085000 5173100 98688000 62702000 78684000 61624000 64027000 67031000 63933000 70265000 13 13 9 13 13 13 13 13 13 13 13 20416000 33519000 152820 34791000 33811000 45115000 32389000 20388000 22803000 23106000 26095000 19011000 31281000 2002800 35557000 32392000 44768000 32632000 22058000 23734000 22454000 25071000 5 5 4 5 5 5 5 5 5 5 5 33681000 60870000 564940 62451000 31682000 31164000 27926000 41785000 43075000 42501000 46975000 31363000 56804000 3170300 63131000 30310000 33916000 28992000 41969000 43297000 41479000 45194000 8 8 5 8 8 8 8 8 8 8 8 9204300000 4947100000 4257200000 19606 1313 18011 100019;100020;100021;100022;100023;100024;100025;100026 121101;121102;121103;121104;121105;121106;121107;121108;121109;121110;121111;121112;121113;121114 121104 14 TVAIPSGENQINQIALNPTGTFLYAASGNAVR Unmodified 3286.6946 0.69460387 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4;Q7Z4S6-6 KIF21A Kinesin-like protein KIF21A yes no 0 0 0 0 By MS/MS By MS/MS 3 0 3 1 2 78.858 78.783 3;4 6.9621E-11 28763 20211116_3441_TMUAki_TMT10x_S_F3 97.639 90.193 5366100 9154600 104900 8082100 6165200 7206300 6978700 4554200 3611500 4771000 6311700 4996300 8538200 443660 8307700 5931100 7335700 6932000 4770700 3917300 4650600 6005100 3 3 2 3 3 3 3 3 3 3 3 2504700 3563800 0 3438100 1935500 3552300 2625300 1622200 1344100 1980900 2496200 2331200 3325000 89505 3518000 1866000 3568400 2587200 1757500 1464300 1919800 2372300 1 1 0 1 1 1 1 1 1 1 1 2861400 5590800 104900 4644000 4229700 3654000 4353400 2932000 2267400 2790100 3815500 2665100 5213200 354160 4789700 4065100 3767300 4344800 3013300 2452900 2730800 3632800 2 2 2 2 2 2 2 2 2 2 2 5394800000 1610000000 3784800000 19607 2082 18012 100027;100028;100029 121115;121116;121117 121116 3 TVALDGTLFQK Unmodified 1191.6499 0.6499385 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 3 2 1 64.453 64.991 2;3 1.7141E-19 21974 20211116_3446_TMUAki_TMT10x_S_F7 236.32 191.59 17415000 28957000 191710 29376000 21297000 25724000 18511000 21388000 22990000 22430000 23381000 16216000 27022000 1621100 29885000 20359000 26333000 19061000 21996000 23206000 21864000 22542000 3 3 2 3 3 3 3 3 3 3 3 6503800 10044000 155810 10674000 10106000 14637000 7987500 8183700 8708300 8439300 8481800 6056800 9374000 734870 10904000 9646300 14521000 8235100 8654000 8819600 8231700 8189100 1 1 1 1 1 1 1 1 1 1 1 10911000 18914000 35908 18703000 11191000 11087000 10524000 13204000 14282000 13991000 14899000 10159000 17648000 886240 18981000 10712000 11812000 10826000 13342000 14387000 13632000 14353000 2 2 1 2 2 2 2 2 2 2 2 1495500000 1043300000 452260000 19608 1723 18013 100030;100031;100032 121118;121119;121120;121121 121120 4 TVALWDLR Unmodified 972.53927 0.53926584 1854;1553 Q16576;Q16576-2;Q09028;Q09028-3;Q09028-2;Q09028-4 RBBP7;RBBP4 Histone-binding protein RBBP7;Histone-binding protein RBBP4 no no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 62.789 63.126 2 0.0014401 20611 20211116_3435_TMUAki_TMT10x_P_F7 121.85 65.948 37447000 66174000 1344100 62849000 53326000 60297000 49756000 34512000 30777000 36767000 47784000 34876000 61735000 4579600 64313000 51123000 61005000 50069000 36458000 32745000 35816000 45569000 4 4 4 4 4 4 4 4 4 4 4 21057000 35647000 981000 34847000 32272000 44762000 33075000 19366000 17280000 20759000 25790000 19613000 33259000 2817100 35755000 31023000 44419000 33018000 21013000 18573000 20217000 24615000 2 2 2 2 2 2 2 2 2 2 2 16390000 30528000 363090 28002000 21054000 15535000 16681000 15146000 13497000 16008000 21994000 15263000 28476000 1762500 28559000 20100000 16586000 17050000 15445000 14172000 15599000 20954000 2 2 2 2 2 2 2 2 2 2 2 3410200000 1947500000 1462800000 19609 1854;1553 18014 100033;100034;100035;100036 121122;121123;121124;121125 121122 4 TVAMHEVFLCR Oxidation (M) 1377.6533 0.65332609 3192 Q9UNH7;Q9UNH7-2 SNX6 Sorting nexin-6;Sorting nexin-6, N-terminally processed yes no 0 0 1 0 By MS/MS By MS/MS 5.67 0.943 2 1 1 2 35.956 36.234 3 1.0054E-05 9194 20211116_3433_TMUAki_TMT10x_P_F5 106.4 80.282 6214900 9987300 66678 10836000 10296000 10965000 7266000 8264500 8861900 7039800 8652000 5786800 9322400 446760 10997000 9797400 11102000 7578100 8502400 8938200 6925900 8352800 9 9 4 9 9 9 9 9 9 9 9 3807300 5894400 11702 6247100 8126600 8972100 4950000 4764200 4918300 3959800 5156700 3544900 5501500 228230 6388900 7712400 8877500 5186100 5032200 5013400 3900500 4967100 3 3 1 3 3 3 3 3 3 3 3 2407600 4092900 54975 4589200 2169100 1993100 2316100 3500300 3943600 3080000 3495300 2241900 3821000 218530 4607900 2085000 2224500 2392000 3470200 3924800 3025400 3385700 6 6 3 6 6 6 6 6 6 6 6 480940000 419000000 61935000 19610 3192 18015 100037;100038;100039 121126;121127;121128;121129;121130;121131;121132;121133;121134 121127 3183 9 TVAMHEVFLCR Unmodified 1361.6584 0.65841147 3192 Q9UNH7;Q9UNH7-2 SNX6 Sorting nexin-6;Sorting nexin-6, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 44.662 44.879 3 0.0033915 13759 20211116_3446_TMUAki_TMT10x_S_F7 64.121 44.99 5002800 8877700 303010 10081000 7774100 7535700 5504500 6935800 6550100 6265100 7879000 4660300 8288400 735970 10162000 7415500 7820400 5734500 7062100 6665000 6146500 7559500 3 3 3 3 3 3 3 3 3 3 3 2074800 3133700 47299 3844700 4465800 5022400 2581900 2825800 2529100 2238100 3252000 1932200 2926800 249580 3889600 4237500 4994500 2715800 2966300 2600900 2210100 3114700 1 1 1 1 1 1 1 1 1 1 1 2928000 5744000 255710 6236800 3308300 2513300 2922600 4110100 4021100 4027000 4627000 2728200 5361600 486390 6272000 3178000 2825900 3018700 4095800 4064200 3936400 4444800 2 2 2 2 2 2 2 2 2 2 2 526980000 268490000 258490000 19611 3192 18015 100040;100041;100042;100043 121135;121136;121137;121138 121137 4 TVAPMPPAQDHK Oxidation (M) 1306.634 0.63397086 766 P22102;P22102-2 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 0 0 1 0 By MS/MS 5 0 1 1 30.946 30.882 3 9.6088E-05 7059 20211116_3433_TMUAki_TMT10x_P_F5 93.623 79.944 442390 680950 0 683880 1079000 967990 547150 481150 631630 474320 640750 411900 635410 44118 701710 1021100 957660 585420 513570 639200 463530 617820 1 1 0 1 1 1 1 1 1 1 1 442390 680950 0 683880 1079000 967990 547150 481150 631630 474320 640750 411900 635410 44118 701710 1021100 957660 585420 513570 639200 463530 617820 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28185000 28185000 0 19612 766 18016 100044 121139 121139 888 1 TVAPMPPAQDHK Unmodified 1290.6391 0.63905624 766 P22102;P22102-2 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 23.893 23.975 3 0.029463 4203 20211116_3444_TMUAki_TMT10x_S_F5 45.28 27.954 241910 381540 3579.7 423990 260840 238290 262710 272900 325320 266330 355830 225260 356180 23657 426760 250370 254990 268320 275530 329300 260380 342310 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 241910 381540 3579.7 423990 260840 238290 262710 272900 325320 266330 355830 225260 356180 23657 426760 250370 254990 268320 275530 329300 260380 342310 1 1 1 1 1 1 1 1 1 1 1 23442000 0 23442000 19613 766 18016 100045;100046 121140;121141 121141 2 TVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRK Unmodified 3989.6319 0.63186059 2381 Q92973;Q92973-2;Q92973-3 TNPO1 Transportin-1 yes no 0 0 0 1 By matching By MS/MS 1 0 2 1 1 59.699 59.553 4 6.963E-39 19981 20211116_3439_TMUAki_TMT10x_S_F1 163.06 158.9 1174300 2298500 0 2522000 948210 609700 821650 670020 681740 847470 1372900 1093300 2145600 93294 2528500 905950 740430 835720 683490 724200 820370 1303000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1174300 2298500 0 2522000 948210 609700 821650 670020 681740 847470 1372900 1093300 2145600 93294 2528500 905950 740430 835720 683490 724200 820370 1303000 1 1 0 1 1 1 1 1 1 1 1 977940000 646290000 331650000 19614 2381 18017 100047;100048 121142 121142 1 TVASATTAIEIR Unmodified 1231.6772 0.67721588 2433 Q96D71;Q96D71-2;Q96D71-4;Q96D71-3 REPS1 RalBP1-associated Eps domain-containing protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 45.19 45.338 2 0.0032897 12815 20211116_3433_TMUAki_TMT10x_P_F5 74.6 0.93575 5761400 9952500 113520 11055000 10216000 8997200 7291200 7737300 8397500 6225500 9009900 5365300 9290800 645850 11170000 9728800 9264300 7583000 7885100 8516400 6142400 8672600 2 2 2 2 2 2 2 2 2 2 2 2682400 4529700 68549 5315600 6993700 6083900 3813800 3295100 3821500 2822500 4106100 2498100 4229600 346660 5378800 6630100 6087900 4035000 3476800 3897500 2776000 3952200 1 1 1 1 1 1 1 1 1 1 1 3079100 5422800 44969 5739700 3222200 2913200 3477400 4442300 4576000 3403000 4903700 2867200 5061200 299190 5790800 3098700 3176500 3548000 4408300 4618900 3366400 4720300 1 1 1 1 1 1 1 1 1 1 1 619570000 308210000 311370000 19615 2433 18018 100049;100050 121143;121144 121143 2 TVASPGVTVEEAVEQIDIGGVTLLR Unmodified 2552.3697 0.36974748 892 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 By MS/MS By MS/MS 4.12 1.36 1 2 2 1 2 3 5 81.093 81.078 3 1.1296E-49 27140 20211116_3431_TMUAki_TMT10x_P_F4 217.86 199.09 5126600 7820300 51673 7802200 5464000 8031700 6545400 5381800 5703200 5652600 6389300 4773400 7297100 379000 7964200 5266200 8108400 6556700 5613700 5863200 5509500 6142300 6 6 2 6 6 6 6 6 6 6 6 2481700 3603400 14609 3722100 2443800 4795900 2856900 2809600 2808900 2755300 3092000 2310500 3362800 182960 3804800 2352200 4774800 2874800 2955300 2869700 2693200 2974000 3 3 1 3 3 3 3 3 3 3 3 2644900 4216900 37064 4080100 3020200 3235800 3688500 2572200 2894300 2897300 3297300 2462800 3934300 196040 4159400 2914000 3333600 3681900 2658500 2993500 2816300 3168300 3 3 1 3 3 3 3 3 3 3 3 6224000000 2621800000 3602200000 19616 892 18019 100051;100052;100053;100054;100055;100056;100057;100058 121145;121146;121147;121148;121149;121150 121146 6 TVASQPISTQTLVEGENDEQSSTDQASAIK Unmodified 3133.4899 0.48987521 1939 Q5T4S7;Q5T4S7-3;Q5T4S7-4;Q5T4S7-2;Q5T4S7-5 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 59.1 58.772 4 0.003302 20706 20211116_3441_TMUAki_TMT10x_S_F3 43.807 33.385 3427500 5603000 42775 5607400 3779200 4736800 3797500 4943700 4567000 4310000 4701100 3191600 5228200 327130 5707200 3626600 4883900 3874800 4997100 4617200 4235500 4530800 3 3 2 3 3 3 3 3 3 3 3 1082700 1567800 21626 1628400 1382200 2261100 1398700 1328400 1185600 1185500 1434200 1008300 1463200 114110 1666400 1327000 2243500 1411300 1393400 1224300 1163700 1375800 1 1 1 1 1 1 1 1 1 1 1 2344700 4035200 21149 3979100 2397100 2475700 2398800 3615300 3381300 3124500 3266900 2183300 3765000 213020 4040800 2299600 2640400 2463600 3603600 3392900 3071800 3155000 2 2 1 2 2 2 2 2 2 2 2 695390000 422390000 273000000 19617 1939 18020 100059;100060 121151;121152;121153 121152 3 TVATPLNQVANPNSAIFGGAR Unmodified 2097.0967 0.096700937 1765 Q15056-2;Q15056 EIF4H Eukaryotic translation initiation factor 4H yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 2 4 3 3 64.803 64.464 2;3 3.561E-85 23065 20211116_3441_TMUAki_TMT10x_S_F3 296.44 256.88 24289000 40062000 240600 37857000 27798000 39227000 26682000 25819000 25083000 25731000 30917000 22616000 37374000 1778100 38796000 26633000 39576000 27073000 26925000 25795000 25134000 29644000 8 8 3 8 8 8 8 8 8 8 8 15100000 23836000 85061 21929000 17133000 29181000 17015000 16030000 15057000 15863000 18959000 14060000 22234000 969430 22614000 16430000 28984000 17204000 16957000 15542000 15499000 18168000 4 4 2 4 4 4 4 4 4 4 4 9189400 16226000 155540 15928000 10665000 10046000 9667000 9789100 10026000 9868600 11959000 8556400 15140000 808650 16182000 10203000 10592000 9868900 9968200 10252000 9634900 11476000 4 4 1 4 4 4 4 4 4 4 4 6460600000 3383300000 3077300000 19618 1765 18021 100061;100062;100063;100064;100065;100066 121154;121155;121156;121157;121158;121159;121160;121161 121161 8 TVATPLNQVANPNSAIFGGARPR Unmodified 2350.2506 0.25057582 1765 Q15056-2;Q15056 EIF4H Eukaryotic translation initiation factor 4H yes no 0 0 0 1 By MS/MS By MS/MS 4.38 1.15 1 2 3 5 2 8 5 55.881 55.921 3;4 1.8291E-68 18559 20211116_3430_TMUAki_TMT10x_P_F3 226.71 205.77 38789000 62911000 543210 66047000 40945000 48594000 39538000 40767000 40899000 40390000 49800000 36120000 58715000 3124200 66896000 39256000 50405000 40221000 41832000 41864000 39462000 47765000 13 13 9 13 13 13 13 13 13 13 13 14411000 20767000 352660 23376000 17622000 25915000 17574000 14260000 15454000 14740000 17478000 13420000 19387000 1568400 23701000 16917000 25982000 17763000 15101000 15886000 14376000 16798000 5 5 5 5 5 5 5 5 5 5 5 24378000 42145000 190550 42671000 23323000 22679000 21964000 26507000 25445000 25650000 32322000 22700000 39327000 1555800 43196000 22339000 24423000 22458000 26731000 25978000 25086000 30967000 8 8 4 8 8 8 8 8 8 8 8 23271000000 11178000000 12094000000 19619 1765 18022 100067;100068;100069;100070;100071;100072;100073;100074;100075;100076;100077;100078;100079 121162;121163;121164;121165;121166;121167;121168;121169;121170;121171;121172;121173;121174;121175;121176;121177;121178 121162 17 TVATPLNQVANPNSAIFGGARPREEVVQK Unmodified 3062.6261 0.62613037 1765 Q15056-2;Q15056 EIF4H Eukaryotic translation initiation factor 4H yes no 0 0 0 2 By MS/MS By MS/MS 2 0 3 1 2 55.86 55.639 4;5 3.8151E-122 16595 20211116_3440_TMUAki_TMT10x_S_F2 315.15 295.44 9093300 14086000 3138 15284000 12845000 9829400 7525700 10559000 11004000 9148100 11326000 8466100 13148000 723980 15426000 12177000 10366000 8019400 10657000 11053000 8992700 10915000 4 4 1 4 4 4 4 4 4 4 4 2677200 3887000 0 4367700 2940900 4795500 2937800 2890200 3673900 2738200 3330800 2492100 3628800 142400 4428200 2814400 4816100 3002800 3030200 3693200 2680600 3223700 1 1 0 1 1 1 1 1 1 1 1 6416100 10199000 3138 10916000 9904100 5033900 4588000 7669200 7329600 6409900 7994700 5974100 9519200 581590 10998000 9362900 5550300 5016600 7626800 7360300 6312100 7691600 3 3 1 3 3 3 3 3 3 3 3 1877800000 872030000 1005800000 19620 1765 18023 100080;100081;100082 121179;121180;121181;121182 121180 4 TVAVIGGISR Unmodified 971.57638 0.57637963 2677 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 43.727 43.665 2 0.00018247 11558 20211116_3436_TMUAki_TMT10x_P_F8 89.047 57.818 6027400 10006000 36351 9733400 8348700 7513200 6368900 7457800 7465200 6543100 8055500 5611900 9335300 509120 9915700 7953800 7789700 6597700 7558000 7567500 6428100 7752500 3 3 1 3 3 3 3 3 3 3 3 2113600 3337700 0 3167500 4296300 4107900 2638600 2372500 2471200 2163900 2750300 1967900 3113800 193090 3257500 4077000 4087900 2757900 2493600 2531200 2122000 2644400 1 1 0 1 1 1 1 1 1 1 1 3913800 6667900 36351 6565900 4052400 3405300 3730300 5085300 4994000 4379200 5305200 3644000 6221500 316030 6658300 3876800 3701800 3839800 5064400 5036300 4306000 5108100 2 2 1 2 2 2 2 2 2 2 2 208810000 77129000 131690000 19621 2677 18024 100083;100084;100085;100086 121183;121184;121185;121186 121184 4 TVAVITSDGR Unmodified 1017.5455 0.54547343 443 O95777 LSM8 U6 snRNA-associated Sm-like protein LSm8 yes yes 0 0 0 0 By MS/MS By MS/MS 4.25 0.829 1 1 2 2 2 36.304 36.286 2 0.00051295 8953 20211116_3431_TMUAki_TMT10x_P_F4 106.16 68.439 9512000 15216000 245080 16307000 14417000 14268000 10873000 9534900 9100200 9234500 12252000 8858400 14202000 1080200 16528000 13750000 14555000 11159000 9924300 9447300 9031300 11722000 4 4 3 4 4 4 4 4 4 4 4 6676500 10816000 202610 11897000 11299000 11706000 7768400 6717300 6162700 6132600 8582000 6218000 10097000 807090 12058000 10757000 11825000 8014700 7064000 6425600 6013500 8203900 2 2 2 2 2 2 2 2 2 2 2 2835500 4399400 42466 4409500 3118800 2562800 3104300 2817600 2937600 3101900 3670400 2640400 4105100 273100 4470100 2992300 2730400 3144400 2860300 3021800 3017800 3518000 2 2 1 2 2 2 2 2 2 2 2 338500000 232780000 105720000 19622 443 18025 100087;100088;100089;100090 121187;121188;121189;121190 121187 4 TVAVWDSETGER Unmodified 1348.6259 0.62590859 2436 Q96DI7;Q96DI7-2 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes no 0 0 0 0 By MS/MS 2 0 1 1 45.154 44.862 2 2.6523E-14 13517 20211116_3429_TMUAki_TMT10x_P_F2 145.46 120.56 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19623 2436 18026 100091 121191 121191 1 TVCGENLPPLTYDQLK Unmodified 1846.9135 0.91349976 1867 Q16850;Q16850-2 CYP51A1 Lanosterol 14-alpha demethylase yes no 0 0 0 0 By MS/MS 6 0 1 1 65.557 65.513 3 2.4081E-07 20176 20211116_3445_TMUAki_TMT10x_S_F6 103.39 77.797 2147100 4393500 54116 4086300 2684700 2626400 2302300 2424700 2348300 2507400 3023300 1999600 4098500 235970 4168600 2567900 2761100 2356700 2477900 2410900 2445400 2895500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2147100 4393500 54116 4086300 2684700 2626400 2302300 2424700 2348300 2507400 3023300 1999600 4098500 235970 4168600 2567900 2761100 2356700 2477900 2410900 2445400 2895500 1 1 1 1 1 1 1 1 1 1 1 506040000 0 506040000 19624 1867 18027 100092 121192 121192 1 TVDATGKEIELTHR Unmodified 1568.8158 0.81583463 212 O43395;O43395-3 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes no 0 0 0 1 By MS/MS By matching 4.67 0.471 1 2 2 1 36.406 36.465 4 2.8365E-09 9023 20211116_3431_TMUAki_TMT10x_P_F4 131.24 110.77 1071800 1589500 10061 1600700 2602000 2384600 1374000 1289200 1338500 1080600 1424400 998000 1483200 118220 1643900 2464600 2356300 1456800 1359800 1366300 1064000 1371400 2 2 1 2 2 2 2 2 2 2 2 1071800 1589500 10061 1600700 2602000 2384600 1374000 1289200 1338500 1080600 1424400 998000 1483200 118220 1643900 2464600 2356300 1456800 1359800 1366300 1064000 1371400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 188500000 147750000 40757000 19625 212 18028 100093;100094;100095 121193;121194 121193 2 TVDEACLLLAEYNGR Unmodified 1722.8247 0.82468476 2905 Q9NQG5 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B yes yes 0 0 0 0 By MS/MS By MS/MS 3.4 0.8 1 1 3 3 2 71.48 71.333 2;3 2.5726E-41 23614 20211116_3442_TMUAki_TMT10x_S_F4 225.15 191.28 3852700 6344000 138570 6194000 3964900 6814300 4622000 4529800 4567000 4582600 4988000 3588200 5919100 450120 6338800 3826700 6852300 4652200 4722400 4663500 4473400 4798700 3 3 3 3 3 3 3 3 3 3 3 2874000 4489800 94999 4442100 2569000 5663600 3352300 3185900 3338400 3280500 3526900 2676700 4189300 322540 4553300 2488700 5638700 3359000 3367100 3403500 3200000 3396400 2 2 2 2 2 2 2 2 2 2 2 978680 1854300 43566 1751900 1395900 1150700 1269600 1343800 1228600 1302100 1461200 911580 1729900 127590 1785500 1337900 1213700 1293200 1355300 1260000 1273400 1402300 1 1 1 1 1 1 1 1 1 1 1 1352200000 1017700000 334420000 19626 2905 18029 100096;100097;100098;100099;100100 121195;121196;121197;121198 121198 4 TVDFTQDSNYLLTGGQDK Unmodified 2000.9327 0.93271488 3284 Q9Y3F4;Q9Y3F4-2 STRAP Serine-threonine kinase receptor-associated protein yes no 0 0 0 0 By MS/MS By MS/MS 4.38 1.45 2 3 3 4 3 1 7 9 70.756 70.668 2;3 6.3039E-103 23138 20211116_3433_TMUAki_TMT10x_P_F5 348.08 324.47 103310000 177460000 772980 172270000 114350000 137870000 112070000 99312000 93762000 102370000 123910000 96196000 165570000 8425300 175590000 109610000 141710000 113230000 103010000 97258000 99852000 118600000 22 22 12 22 22 22 22 22 22 22 22 46658000 76871000 435470 76481000 49234000 85797000 57355000 43852000 42968000 46734000 55138000 43446000 71727000 4268100 78190000 47436000 85888000 57308000 46789000 44774000 45524000 52813000 10 10 7 10 10 10 10 10 10 10 10 56653000 100590000 337510 95786000 65119000 52074000 54712000 55459000 50795000 55634000 68769000 52749000 93841000 4157200 97403000 62178000 55821000 55920000 56222000 52484000 54328000 65783000 12 12 5 12 12 12 12 12 12 12 12 21339000000 11866000000 9473600000 19627 3284 18030 100101;100102;100103;100104;100105;100106;100107;100108;100109;100110;100111;100112;100113;100114;100115;100116 121199;121200;121201;121202;121203;121204;121205;121206;121207;121208;121209;121210;121211;121212;121213;121214;121215;121216;121217;121218;121219;121220;121221;121222 121206 24 TVDGPSGK Unmodified 759.37628 0.37628284 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS 2.67 1.49 2 1 1 1 1 4 2 30.356 30.252 2 0.00044143 9127 20211116_3441_TMUAki_TMT10x_S_F3 150.05 100.01 6558700 10192000 69534 7621200 5361100 8708600 3758300 3603200 3926500 3684200 6397700 6107300 9500300 587400 7972700 5104100 8690000 3901200 3923500 4074900 3594800 6095100 5 5 4 5 5 5 5 5 5 5 5 5011700 7701700 49377 5802300 3994900 7136700 2676700 2756700 3038200 2859800 4912400 4666700 7179400 442900 6073400 3800100 7089700 2795200 3027000 3141500 2788800 4680800 4 4 3 4 4 4 4 4 4 4 4 1547000 2489900 20156 1818900 1366200 1571900 1081600 846450 888310 824390 1485300 1440500 2320900 144510 1899200 1304100 1600300 1106000 896560 933340 806050 1414300 1 1 1 1 1 1 1 1 1 1 1 385720000 266370000 119350000 19628 489 18031 100117;100118;100119;100120;100121;100122 121223;121224;121225;121226;121227;121228 121228 6 TVDLKPDWGK Unmodified 1157.6081 0.60807369 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 1 By MS/MS 7.5 0.5 1 1 2 51.625 52.007 3 0.0020772 16152 20211116_3435_TMUAki_TMT10x_P_F7 78.903 50.576 8002200 11580000 71445 16727000 36373000 17951000 14532000 6676900 6979900 7196200 12170000 7451100 10825000 1091300 16719000 34329000 17958000 15649000 7373200 7615500 7006800 11580000 2 2 1 2 2 2 2 2 2 2 2 8002200 11580000 71445 16727000 36373000 17951000 14532000 6676900 6979900 7196200 12170000 7451100 10825000 1091300 16719000 34329000 17958000 15649000 7373200 7615500 7006800 11580000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 796450000 796450000 0 19629 897 18032 100123;100124 121229;121230 121229 2 TVDLQDAEEAVELVQYAYFK Unmodified 2330.1318 0.13180862 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 0 By MS/MS By MS/MS 3.71 1.39 2 1 2 1 1 2 5 82.81 82.808 3 1.3485E-32 27619 20211116_3440_TMUAki_TMT10x_S_F2 194.19 179.1 11614000 19292000 56041 16282000 12176000 15316000 13740000 9936900 11850000 12613000 14104000 10814000 17990000 943860 16808000 11713000 15542000 13797000 10455000 12218000 12208000 13536000 9 9 3 9 9 9 9 9 9 9 9 5030900 7963100 48201 6833200 4355200 8189300 4489900 4215500 5438000 5373300 6123500 4684400 7426200 422120 7071000 4180300 8169800 4576600 4521200 5515100 5200200 5885900 3 3 2 3 3 3 3 3 3 3 3 6583400 11329000 7839.9 9448700 7820900 7126900 9249900 5721400 6412400 7239700 7980500 6129500 10564000 521740 9737300 7532300 7372000 9220000 5933500 6703300 7008100 7649900 6 6 1 6 6 6 6 6 6 6 6 1458500000 739930000 718570000 19630 799 18033 100125;100126;100127;100128;100129;100130;100131 121231;121232;121233;121234;121235;121236;121237;121238;121239 121235 9 TVDLQDAEEAVELVQYAYFKK Unmodified 2458.2268 0.22677164 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 1 By MS/MS By MS/MS 5.38 1.22 3 1 2 2 4 4 81.065 81.072 3;4 1.2273E-14 27137 20211116_3431_TMUAki_TMT10x_P_F4 139.17 117.16 7196100 11528000 229980 11223000 7392700 11285000 8402400 6964400 6352700 7262100 8540900 6702000 10756000 813690 11471000 7127800 11395000 8406700 7307900 6630100 7080300 8171400 4 4 4 4 4 4 4 4 4 4 4 5054700 8035800 132460 8029100 4992500 9046500 5753400 5253800 4671900 5357800 6121800 4707400 7498200 541650 8206700 4814200 9068000 5762600 5536200 4851700 5228400 5860600 3 3 3 3 3 3 3 3 3 3 3 2141300 3492600 97515 3193500 2400200 2238300 2649000 1710600 1680800 1904300 2419100 1994500 3257800 272040 3264700 2313600 2327300 2644000 1771600 1778500 1851900 2310800 1 1 1 1 1 1 1 1 1 1 1 3290300000 2087900000 1202300000 19631 799 18034 100132;100133;100134;100135;100136;100137;100138;100139 121240;121241;121242;121243;121244 121240 5 TVDLSSHLAK Unmodified 1069.5768 0.57677356 494 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 39.518 39.608 3 3.6757E-06 9492 20211116_3434_TMUAki_TMT10x_P_F6 140.07 58.481 1443500 2242400 36480 2479900 2548500 2739100 1958100 1722300 1882000 1517700 1979400 1344300 2093200 169150 2517000 2431000 2751500 2014700 1796300 1921400 1490700 1906500 3 3 3 3 3 3 3 3 3 3 3 987950 1503700 26178 1674000 2085000 2335800 1511200 1131700 1257800 1015300 1334200 920070 1403700 121670 1705600 1986400 2311700 1555000 1207900 1293400 996370 1284700 1 1 1 1 1 1 1 1 1 1 1 455520 738660 10302 805860 463440 403250 446980 590670 624130 502470 645210 424210 689500 47478 811340 444580 439850 459740 588460 627940 494370 621760 2 2 2 2 2 2 2 2 2 2 2 129200000 70841000 58362000 19632 494 18035 100140;100141 121245;121246;121247 121245 3 TVDNFVALATGEK Unmodified 1363.6983 0.69834526 779 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 0 0 By MS/MS By MS/MS 5.89 1.37 4 4 4 4 3 9 10 71.664 71.721 2;3 1.7129E-53 22683 20211116_3445_TMUAki_TMT10x_S_F6 305.06 246.83 163820000 271690000 1571800 291360000 213440000 264440000 191400000 186690000 176460000 177930000 213870000 152540000 253590000 15189000 295450000 204160000 269310000 194830000 193470000 181500000 174140000 205160000 25 25 13 25 25 25 25 25 25 25 25 91253000 149770000 909840 162020000 130020000 191090000 119100000 104770000 98044000 99972000 117640000 84971000 139800000 8697200 164860000 124440000 190930000 120720000 110730000 101360000 97836000 112870000 13 13 8 13 13 13 13 13 13 13 13 72562000 121920000 662000 129340000 83418000 73358000 72301000 81918000 78412000 77961000 96233000 67565000 113800000 6491700 130590000 79727000 78378000 74109000 82738000 80136000 76304000 92281000 12 12 5 12 12 12 12 12 12 12 12 28097000000 14595000000 13502000000 19633 779 18036 100142;100143;100144;100145;100146;100147;100148;100149;100150;100151;100152;100153;100154;100155;100156;100157;100158;100159;100160 121248;121249;121250;121251;121252;121253;121254;121255;121256;121257;121258;121259;121260;121261;121262;121263;121264;121265;121266;121267;121268;121269;121270;121271;121272;121273;121274 121268 27 TVDSQGPTPVCTPTFLER Unmodified 2003.9622 0.96224087 2730 Q9BYG3 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes yes 0 0 0 0 By MS/MS 5 0 1 1 57.617 57.751 3 0.0019223 16693 20211116_3444_TMUAki_TMT10x_S_F5 60.561 49.087 10250000 16419000 59908 17864000 11282000 9882700 9620700 13636000 12902000 13259000 13810000 9543100 15327000 787090 18002000 10771000 10644000 9947100 13664000 13014000 12965000 13294000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10250000 16419000 59908 17864000 11282000 9882700 9620700 13636000 12902000 13259000 13810000 9543100 15327000 787090 18002000 10771000 10644000 9947100 13664000 13014000 12965000 13294000 2 2 1 2 2 2 2 2 2 2 2 632140000 0 632140000 19634 2730 18037 100161 121275;121276 121275 2 TVEAEAAHGTVTR Unmodified 1340.6684 0.66844211 364 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 27.592 27.436 2;3 1.0638E-36 8181 20211116_3441_TMUAki_TMT10x_S_F3 272.59 232.11 212650 386970 6843.5 369900 253480 393590 254050 198430 232020 232920 299990 198050 361020 22594 378920 243460 395120 256990 212630 239420 226060 287290 4 4 2 4 4 4 4 4 4 4 4 117490 217470 6843.5 214000 161650 281570 137230 125130 134520 135340 166630 109450 202910 15007 219570 154800 279160 140390 135420 138100 131760 159740 3 3 2 3 3 3 3 3 3 3 3 95157 169500 0 155900 91827 112030 116830 73301 97503 97582 133370 88599 158110 7586.7 159350 88660 115960 116600 77209 101310 94303 127550 1 1 0 1 1 1 1 1 1 1 1 56823000 19243000 37580000 19635 364 18038 100162;100163;100164;100165 121277;121278;121279;121280;121281 121280 5 TVEALYK Unmodified 822.44872 0.4487195 1466 Q00325-2;Q00325 SLC25A3 Phosphate carrier protein, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4.75 0.829 2 1 1 1 3 44.492 44.601 2 0.0071294 11280 20211116_3444_TMUAki_TMT10x_S_F5 117.17 52.393 5340600 8075000 0 9333200 10375000 9561000 6086900 5007800 5024800 4764900 6592400 4971400 7539500 367420 9435900 9830700 9623800 6365500 5314100 5214000 4663700 6310900 2 2 0 2 2 2 2 2 2 2 2 5340600 8075000 0 9333200 10375000 9561000 6086900 5007800 5024800 4764900 6592400 4971400 7539500 367420 9435900 9830700 9623800 6365500 5314100 5214000 4663700 6310900 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 112400000 112400000 0 19636 1466 18039 100166;100167;100168;100169 121282;121283;121284;121285;121286 121285 5 TVECEEGSEDDESLREMVELAAQR Oxidation (M) 2797.2018 0.20183181 3155 Q9UKF6 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 yes yes 0 0 1 1 By MS/MS 2 0 1 1 52.34 52.172 3 3.6589E-06 15190 20211116_3440_TMUAki_TMT10x_S_F2 82.635 75.442 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19637 3155 18040 100170 121287 121287 3167 1 TVEDYFCFCYGK Unmodified 1587.6374 0.63740126 1428 P78347;P78347-2;P78347-4;P78347-3;P78347-5 GTF2I General transcription factor II-I yes no 0 0 0 0 By matching By MS/MS 6.5 0.866 1 3 1 3 74.339 74.502 2;3 6.4049E-09 25947 20211116_3446_TMUAki_TMT10x_S_F7 152.28 118.87 10978000 19341000 37036 17321000 13706000 12035000 13098000 10739000 10053000 11225000 13483000 10221000 18040000 889230 17734000 13123000 12558000 13223000 10999000 10482000 10942000 12900000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10978000 19341000 37036 17321000 13706000 12035000 13098000 10739000 10053000 11225000 13483000 10221000 18040000 889230 17734000 13123000 12558000 13223000 10999000 10482000 10942000 12900000 3 3 1 3 3 3 3 3 3 3 3 1752800000 526740000 1226100000 19638 1428 18041 100171;100172;100173;100174 121288;121289;121290;121291 121289 4 TVEEAADLSLGYMK Unmodified 1525.7334 0.73341013 2054 Q7L266;Q7L266-2 ASRGL1 Isoaspartyl peptidase/L-asparaginase;Isoaspartyl peptidase/L-asparaginase alpha chain;Isoaspartyl peptidase/L-asparaginase beta chain yes no 0 0 0 0 By MS/MS 5 0 1 1 55.358 55.555 3 0.10309 16898 20211116_3433_TMUAki_TMT10x_P_F5 31.675 0.84697 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19639 2054 18042 100175 121292 121292 1 TVEEEDQIFLDGQENK Unmodified 1892.864 0.86396661 2483 Q96HA1;Q96HA1-2;Q96HA1-3;A8CG34;Q6PJE2;Q6PJE2-5;A8CG34-2 POM121;POM121C;POMZP3 Nuclear envelope pore membrane protein POM 121;Nuclear envelope pore membrane protein POM 121C;POM121 and ZP3 fusion protein yes no 0 0 0 0 By MS/MS 1 0 1 1 60.651 60.365 3 0.086895 20312 20211116_3439_TMUAki_TMT10x_S_F1 33.131 22.026 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19640 2483 18043 100176 121293 121293 1 TVEELLETGLIQVATK Unmodified 1742.9666 0.96658119 2107 Q86UP2;Q86UP2-3;Q86UP2-4;Q86UP2-2 KTN1 Kinectin yes no 0 0 0 0 By MS/MS By MS/MS 5.25 0.829 1 1 2 3 1 81.307 81.309 3 0.086011 27257 20211116_3431_TMUAki_TMT10x_P_F4 33.313 14.949 786540 1396700 0 1383400 1109200 943550 1014100 644760 732280 756840 868360 732270 1303200 60594 1405600 1060600 981640 1024900 673980 762130 734550 833470 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 786540 1396700 0 1383400 1109200 943550 1014100 644760 732280 756840 868360 732270 1303200 60594 1405600 1060600 981640 1024900 673980 762130 734550 833470 1 1 0 1 1 1 1 1 1 1 1 504410000 353740000 150670000 19641 2107 18044 100177;100178;100179;100180 121294;121295 121294 2 TVEEVLGHFGVNESTGLSLEQVKK Unmodified 2599.3493 0.34934639 697 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 0 1 By MS/MS By MS/MS 7 1 1 3 2 2 4 73.289 73.347 4;5 4.8141E-48 25424 20211116_3446_TMUAki_TMT10x_S_F7 200.9 182.81 30234000 49233000 976250 49158000 34353000 47181000 35158000 30515000 32097000 34455000 39148000 28158000 45940000 3446500 50125000 33017000 47812000 35526000 31985000 33038000 33488000 37547000 8 8 7 8 8 8 8 8 8 8 8 13622000 21949000 242170 21022000 13031000 26633000 14144000 12198000 14068000 15721000 16699000 12685000 20478000 1346800 21595000 12538000 26461000 14286000 13236000 14408000 15209000 16027000 3 3 3 3 3 3 3 3 3 3 3 16612000 27284000 734080 28137000 21322000 20548000 21014000 18317000 18029000 18734000 22450000 15473000 25462000 2099700 28530000 20479000 21351000 21239000 18749000 18629000 18279000 21520000 5 5 4 5 5 5 5 5 5 5 5 10910000000 2747800000 8162600000 19642 697 18045 100181;100182;100183;100184;100185;100186 121296;121297;121298;121299;121300;121301;121302;121303 121299 8 TVEGVLIVHEHR Unmodified 1387.7572 0.75719754 246 O43809 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 0 0 0 0 By MS/MS By MS/MS 4.43 0.728 1 2 4 5 2 34.667 34.713 3;4 6.3659E-09 8602 20211116_3433_TMUAki_TMT10x_P_F5 142.89 110.16 3194000 5271600 11956 5256100 5618500 6194800 3864600 3999900 4045700 3780100 4302500 2973400 4918900 233570 5377300 5338900 6203700 4017300 4171000 4117000 3700900 4142600 5 5 4 5 5 5 5 5 5 5 5 2467000 4061100 7857.2 3984700 4950200 5548600 3040000 3247000 3321200 3079700 3418400 2296500 3789200 170300 4093900 4694000 5504300 3192200 3412500 3369900 3014700 3294600 3 3 2 3 3 3 3 3 3 3 3 727000 1210500 4098.8 1271400 668280 646260 824600 752870 724510 700390 884180 676940 1129700 63271 1283400 644950 699330 825150 758510 747110 686200 847990 2 2 2 2 2 2 2 2 2 2 2 468880000 399730000 69144000 19643 246 18046 100187;100188;100189;100190;100191;100192;100193 121304;121305;121306;121307;121308;121309 121306 6 TVEHGFPNQPSALAFDPELR Unmodified 2224.0913 0.091281208 1788 Q15334 LLGL1 Lethal(2) giant larvae protein homolog 1 yes yes 0 0 0 0 By MS/MS 5 0 1 1 59.789 59.895 3 0.0054712 17574 20211116_3444_TMUAki_TMT10x_S_F5 52.19 34.489 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19644 1788 18047 100194 121310 121310 1 TVEICPFSFDSR Unmodified 1456.6657 0.66566492 3175 Q9ULW0;Q9ULW0-2 TPX2 Targeting protein for Xklp2 yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 66.84 66.868 2 2.2137E-12 21538 20211116_3433_TMUAki_TMT10x_P_F5 142.94 96.782 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19645 3175 18048 100195;100196;100197 121311;121312;121313 121311 3 TVEIVHIDIADR Unmodified 1379.7409 0.74087877 1084 P48739;P48739-2;P48739-3 PITPNB Phosphatidylinositol transfer protein beta isoform yes no 0 0 0 0 By MS/MS By MS/MS 2.88 1.36 2 1 2 2 1 3 5 52.58 52.525 3 2.6633E-12 15386 20211116_3431_TMUAki_TMT10x_P_F4 172.33 138.65 7909900 12169000 242580 12989000 11292000 13087000 9118900 10178000 9796800 9556400 10683000 7366500 11358000 901540 13194000 10785000 13261000 9384300 10477000 9968400 9358900 10278000 5 5 4 5 5 5 5 5 5 5 5 4668600 6646400 35804 7377100 7814500 9533700 5630200 5625900 5451600 5161200 6305200 4347000 6204500 436800 7506500 7438400 9491500 5819700 5903400 5584200 5059800 6055900 3 3 2 3 3 3 3 3 3 3 3 3241300 5522400 206770 5611900 3477100 3553400 3488700 4552400 4345200 4395200 4377800 3019500 5153300 464730 5688000 3346800 3769400 3564600 4573400 4384200 4299000 4222100 2 2 2 2 2 2 2 2 2 2 2 3447600000 2050500000 1397100000 19646 1084 18049 100198;100199;100200;100201;100202;100203;100204;100205 121314;121315;121316;121317;121318;121319 121316 6 TVELLSGVVDQTK Unmodified 1387.7559 0.75586013 3141 Q9UJS0;Q9UJS0-2 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes no 0 0 0 0 By MS/MS 5 0 1 1 66.869 66.982 2 4.6975E-18 21589 20211116_3433_TMUAki_TMT10x_P_F5 151.98 125.38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19647 3141 18050 100206 121320 121320 1 TVELSIPADPANLDSEAK Unmodified 1868.9367 0.93673763 1591 Q13085;Q13085-4;Q13085-3;Q13085-2 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 0 0 0 0 By MS/MS By MS/MS 3 0 3 1 2 68.483 68.084 3 1.3601E-07 24477 20211116_3441_TMUAki_TMT10x_S_F3 103.5 82.249 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19648 1591 18051 100207;100208;100209 121321;121322;121323 121322 3 TVENIKDPLFR Unmodified 1330.7245 0.72450043 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 51.479 51.901 3 5.9314E-05 16076 20211116_3435_TMUAki_TMT10x_P_F7 100.02 73.363 16059000 27038000 309670 31512000 32240000 33639000 20823000 27260000 23282000 22013000 25908000 14955000 25246000 1846600 31863000 30645000 33994000 21795000 27881000 23671000 21715000 24912000 3 3 3 3 3 3 3 3 3 3 3 10349000 16624000 202130 19922000 27133000 28618000 16574000 16536000 13995000 13132000 15859000 9637000 15524000 1281400 20221000 25763000 28346000 17284000 17320000 14416000 12966000 15240000 2 2 2 2 2 2 2 2 2 2 2 5710300 10414000 107540 11589000 5107900 5020500 4249600 10724000 9287200 8880700 10050000 5317600 9721800 565210 11642000 4882600 5647900 4511300 10561000 9254700 8749300 9671100 1 1 1 1 1 1 1 1 1 1 1 1065300000 780920000 284380000 19649 1695 18052 100210;100211;100212 121324;121325;121326 121325 3 TVENVTVFGTASASK Unmodified 1509.7675 0.76748745 2580 Q99536;Q99536-2;Q99536-3 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes no 0 0 0 0 By MS/MS By MS/MS 6.6 0.49 2 3 3 2 53.563 53.989 3 4.4355E-10 17474 20211116_3446_TMUAki_TMT10x_S_F7 116.86 101.6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19650 2580 18053 100213;100214;100215;100216;100217 121327;121328;121329;121330;121331 121331 5 TVEPLEYYR Unmodified 1168.5764 0.57643921 2414 Q96B26 EXOSC8 Exosome complex component RRP43 yes yes 0 0 0 0 By MS/MS 4 0 2 2 48.703 48.85 2 0.00025153 13904 20211116_3431_TMUAki_TMT10x_P_F4 96.367 59.392 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19651 2414 18054 100218;100219 121332;121333 121332 2 TVEPLEYYRR Unmodified 1324.6776 0.67755023 2414 Q96B26 EXOSC8 Exosome complex component RRP43 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.707 1 2 1 2 2 39.255 39.361 3 1.9325E-05 10633 20211116_3433_TMUAki_TMT10x_P_F5 135.55 88.704 6012700 9458200 41245 11389000 9701400 9485800 6407400 7753800 8385000 6997900 8887400 5598500 8832800 556970 11454000 9219800 9742000 6732800 7948300 8461600 6865700 8557800 5 5 2 5 5 5 5 5 5 5 5 2280400 3530500 17812 4465400 6362800 6534800 3319800 3419000 3548000 2940100 3534600 2123400 3297800 259140 4520400 6025300 6459600 3533600 3619100 3599100 2891200 3410100 2 2 1 2 2 2 2 2 2 2 2 3732300 5927800 23434 6924000 3338600 2951000 3087600 4334800 4837000 4057800 5352800 3475100 5535000 297830 6933900 3194500 3282500 3199200 4329200 4862600 3974500 5147700 3 3 1 3 3 3 3 3 3 3 3 292570000 236230000 56338000 19652 2414 18055 100220;100221;100222;100223 121334;121335;121336;121337;121338;121339 121336 6 TVEPPISQVGNVDTASELEK Unmodified 2112.0586 0.058643676 404 O95104;O95104-2;O95104-3 SCAF4 Splicing factor, arginine/serine-rich 15 yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 61.952 61.854 3 2.6116E-09 20913 20211116_3430_TMUAki_TMT10x_P_F3 106.39 90.444 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19653 404 18056 100224;100225;100226 121340;121341;121342 121340 3 TVESEAASYLDQISR Unmodified 1667.8002 0.80024414 1307 P61289;P61289-2;P61289-3 PSME3 Proteasome activator complex subunit 3 yes no 0 0 0 0 By MS/MS By MS/MS 2.88 1.28 3 4 4 4 2 8 9 69.589 69.407 2;3 5.0904E-100 22326 20211116_3431_TMUAki_TMT10x_P_F4 366.59 310.79 132870000 220290000 658300 212900000 147550000 167930000 140720000 132770000 134020000 136870000 162720000 123710000 205530000 10784000 217050000 141280000 173060000 142890000 136890000 137650000 133500000 156080000 25 25 9 25 25 25 25 25 25 25 25 45002000 71935000 243540 68257000 52039000 85603000 51305000 44869000 46549000 45225000 53983000 41901000 67110000 3793200 70153000 49876000 85222000 51932000 47686000 47827000 44155000 51845000 8 8 2 8 8 8 8 8 8 8 8 87866000 148360000 414760 144640000 95512000 82325000 89419000 87904000 87468000 91642000 108730000 81809000 138420000 6990700 146890000 91402000 87836000 90959000 89205000 89823000 89348000 104230000 17 17 7 17 17 17 17 17 17 17 17 20970000000 9966600000 11003000000 19654 1307 18057 100227;100228;100229;100230;100231;100232;100233;100234;100235;100236;100237;100238;100239;100240;100241;100242;100243 121343;121344;121345;121346;121347;121348;121349;121350;121351;121352;121353;121354;121355;121356;121357;121358;121359;121360;121361;121362;121363;121364;121365;121366;121367;121368 121350 26 TVESITDIR Unmodified 1032.5451 0.54513908 622 P11279 LAMP1 Lysosome-associated membrane glycoprotein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 44.563 44.533 2 6.9901E-05 14902 20211116_3441_TMUAki_TMT10x_S_F3 144.12 71.983 5565700 8867000 118510 9639800 10549000 9258800 6407300 8557300 8484200 6732700 8368400 5183000 8276800 637830 9773900 10017000 9440000 6780000 8681300 8536200 6650700 8076300 3 3 2 3 3 3 3 3 3 3 3 2668200 4252800 40682 4761000 7338700 6394300 3356000 3819700 4093800 3097100 4229000 2484600 3970200 320700 4845500 6938800 6355400 3635200 3991900 4137200 3054500 4075400 2 2 1 2 2 2 2 2 2 2 2 2897500 4614200 77829 4878800 3210000 2864500 3051300 4737600 4390400 3635700 4139400 2698400 4306500 317130 4928300 3078700 3084500 3144800 4689300 4399000 3596200 4000900 1 1 1 1 1 1 1 1 1 1 1 341300000 106310000 234990000 19655 622 18058 100244;100245;100246 121369;121370;121371 121371 3 TVEVAEGEAVR Unmodified 1158.5881 0.58806652 2105 Q86UE4 MTDH Protein LYRIC yes yes 0 0 0 0 By MS/MS 1 0 1 1 35.116 35.081 2 8.2999E-15 9969 20211116_3439_TMUAki_TMT10x_S_F1 167.93 118.22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19656 2105 18059 100247 121372 121372 1 TVEVPFKGDVEHTIR Unmodified 1725.905 0.90498399 3070 Q9P2T1;Q9P2T1-3;Q9P2T1-2 GMPR2 GMP reductase 2 yes no 0 0 0 1 By MS/MS 5.5 0.5 1 1 2 48.523 48.662 4 5.2091E-05 14057 20211116_3433_TMUAki_TMT10x_P_F5 95.236 73.363 4319700 7016000 63455 7707300 10277000 11195000 6500600 6692400 5908200 5674900 6447600 4022500 6549200 500460 7866100 9762600 11088000 6773000 7001200 6055600 5584300 6203100 3 3 2 3 3 3 3 3 3 3 3 4319700 7016000 63455 7707300 10277000 11195000 6500600 6692400 5908200 5674900 6447600 4022500 6549200 500460 7866100 9762600 11088000 6773000 7001200 6055600 5584300 6203100 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 663220000 663220000 0 19657 3070 18060 100248;100249 121373;121374;121375 121373 3 TVEYLHAQGVVHR Unmodified 1507.7896 0.7895603 1164 P51812 RPS6KA3 Ribosomal protein S6 kinase alpha-3 yes yes 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 32.893 32.853 4 0.0037182 7858 20211116_3433_TMUAki_TMT10x_P_F5 62.528 39.292 1328400 2314800 36997 2008400 2186600 2387400 1535600 984490 1031200 972880 1584000 1237100 2158900 156630 2076300 2082500 2377200 1576100 1071400 1090700 950640 1510900 1 1 1 1 1 1 1 1 1 1 1 1328400 2314800 36997 2008400 2186600 2387400 1535600 984490 1031200 972880 1584000 1237100 2158900 156630 2076300 2082500 2377200 1576100 1071400 1090700 950640 1510900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 60913000 60913000 0 19658 1164 18061 100250;100251 121376 121376 1 TVFAEHISDECKR Unmodified 1590.746 0.7460405 975 P39023 RPL3 60S ribosomal protein L3 yes yes 0 0 0 1 By matching By MS/MS 5 0 2 1 1 35.266 35.335 4 3.769E-06 7608 20211116_3444_TMUAki_TMT10x_S_F5 105.14 83.888 250550 441390 0 571160 231160 231390 207320 293880 337410 274310 350310 233250 412350 16239 568430 220770 258090 215560 295060 338030 268710 337530 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 250550 441390 0 571160 231160 231390 207320 293880 337410 274310 350310 233250 412350 16239 568430 220770 258090 215560 295060 338030 268710 337530 1 1 0 1 1 1 1 1 1 1 1 91099000 72347000 18752000 19659 975 18062 100252;100253 121377 121377 1 TVFDEAIR Unmodified 949.4869 0.48689592 1390 P63000;P63000-2;P60763;P15153 RAC1;RAC3;RAC2 Ras-related C3 botulinum toxin substrate 1;Ras-related C3 botulinum toxin substrate 3;Ras-related C3 botulinum toxin substrate 2 yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 47.923 47.91 2 0.00044443 13878 20211116_3442_TMUAki_TMT10x_S_F4 150.88 87.594 24269000 35667000 65796 41651000 40183000 38090000 25931000 31145000 30741000 26717000 33122000 22595000 33303000 2041000 42014000 38159000 38867000 27197000 31884000 31148000 26275000 31878000 4 4 2 4 4 4 4 4 4 4 4 13476000 19246000 0 22788000 31168000 29646000 17560000 17546000 17019000 14819000 18309000 12546000 17972000 1109800 23100000 29527000 29507000 18507000 18368000 17383000 14585000 17622000 2 2 0 2 2 2 2 2 2 2 2 10792000 16421000 65796 18862000 9015000 8443500 8371100 13599000 13722000 11898000 14813000 10049000 15331000 931190 18914000 8631800 9360200 8690500 13516000 13765000 11690000 14256000 2 2 2 2 2 2 2 2 2 2 2 3616700000 2056800000 1559900000 19660 1390 18063 100254;100255;100256;100257;100258;100259 121378;121379;121380;121381;121382;121383 121383 6 TVFEALQAPACHENLVK Unmodified 1925.9669 0.96693232 400 O94973;O94973-2;O94973-3 AP2A2 AP-2 complex subunit alpha-2 yes no 0 0 0 0 By MS/MS 7 0 2 2 58.7 59.216 3 0.00022855 19634 20211116_3446_TMUAki_TMT10x_S_F7 73.208 61.043 5060700 8184500 0 9015100 5632900 4732000 4673100 6378200 4834700 5869100 6751100 4711900 7640100 414310 9074200 5376100 5121900 4795300 6386600 4979400 5753000 6453200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5060700 8184500 0 9015100 5632900 4732000 4673100 6378200 4834700 5869100 6751100 4711900 7640100 414310 9074200 5376100 5121900 4795300 6386600 4979400 5753000 6453200 1 1 0 1 1 1 1 1 1 1 1 552350000 0 552350000 19661 400 18064 100260;100261 121384;121385 121384 2 TVFFESLER Unmodified 1126.5659 0.56587452 5 A0AVT1;A0AVT1-4;A0AVT1-3 UBA6 Ubiquitin-like modifier-activating enzyme 6 yes no 0 0 0 0 By MS/MS By MS/MS 4.86 0.833 3 2 2 3 4 62.562 62.567 2 0.0013064 18646 20211116_3444_TMUAki_TMT10x_S_F5 99.802 72.277 16853000 27717000 64574 27397000 20558000 23551000 19046000 22263000 21281000 21284000 23757000 15692000 25862000 1503400 27915000 19677000 24200000 19467000 22671000 21640000 20827000 22841000 4 4 3 4 4 4 4 4 4 4 4 5038800 7496500 0 8166300 6127500 10138000 6371900 6065200 6021900 6245800 6639500 4691600 6997600 427080 8313100 5881100 10115000 6439700 6377600 6163400 6092600 6385800 1 1 0 1 1 1 1 1 1 1 1 11814000 20221000 64574 19231000 14430000 13413000 12674000 16197000 15260000 15038000 17117000 11000000 18864000 1076300 19602000 13796000 14085000 13028000 16293000 15477000 14735000 16455000 3 3 3 3 3 3 3 3 3 3 3 1244900000 305230000 939690000 19662 5 18065 100262;100263;100264;100265;100266;100267;100268 121386;121387;121388;121389;121390;121391;121392 121391 7 TVFGVEPDLTR Unmodified 1232.6401 0.6401021 2511 Q96KP4;Q96KP4-2 CNDP2 Cytosolic non-specific dipeptidase yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 57.318 57.418 2 2.6511E-23 17869 20211116_3442_TMUAki_TMT10x_S_F4 245.5 197.33 19030000 32494000 162830 33703000 27974000 35267000 23703000 29347000 28261000 26697000 27724000 17719000 30325000 1808600 34321000 26723000 35698000 24408000 30057000 28532000 26183000 26761000 4 4 2 4 4 4 4 4 4 4 4 11028000 18230000 159760 19210000 19196000 28001000 16979000 17097000 16348000 15686000 15444000 10269000 17014000 1162600 19659000 18359000 27738000 17319000 17891000 16627000 15378000 14926000 2 2 1 2 2 2 2 2 2 2 2 8002000 14264000 3073.2 14493000 8778100 7266200 6724400 12250000 11912000 11011000 12280000 7450400 13311000 645980 14661000 8363400 7960100 7088800 12167000 11905000 10805000 11835000 2 2 1 2 2 2 2 2 2 2 2 2653200000 1579800000 1073400000 19663 2511 18066 100269;100270;100271;100272;100273;100274 121393;121394;121395;121396;121397;121398 121397 6 TVFSPTLPAAR Unmodified 1158.6397 0.63970816 2071 Q7Z2W4;Q7Z2W4-3;Q7Z2W4-2 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 0 0 0 0 By matching By MS/MS 2 0 2 1 1 51.149 50.944 2 0.041495 14734 20211116_3440_TMUAki_TMT10x_S_F2 56.632 21.825 3209900 5378500 42370 5348500 2787600 2841600 2428800 3780400 4291500 3534800 4380200 2989000 5018600 299690 5421000 2666500 3070600 2540100 3788900 4287500 3462400 4222700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3209900 5378500 42370 5348500 2787600 2841600 2428800 3780400 4291500 3534800 4380200 2989000 5018600 299690 5421000 2666500 3070600 2540100 3788900 4287500 3462400 4222700 1 1 1 1 1 1 1 1 1 1 1 255060000 180290000 74766000 19664 2071 18067 100275;100276 121399 121399 1 TVFVCDEDATLELK Unmodified 1638.7811 0.78108861 1058 P46926;P46926-2 GNPDA1 Glucosamine-6-phosphate isomerase 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.6 0.8 3 1 1 2 3 68.962 68.648 2;3 5.1478E-43 22539 20211116_3442_TMUAki_TMT10x_S_F4 248.41 215.18 7315200 12850000 38507 11386000 9489100 10679000 9187600 8191000 6732800 7812900 9412200 6811400 11985000 493210 11709000 9093400 10867000 9259200 8442300 7052000 7646100 8996700 3 3 2 3 3 3 3 3 3 3 3 2745900 4455200 4321.1 4258700 2936100 5010100 3465400 2779500 2587200 2841300 3449800 2556700 4156500 234340 4369700 2828800 5007500 3460300 2940500 2701000 2772400 3301200 1 1 1 1 1 1 1 1 1 1 1 4569300 8394800 34186 7127600 6553000 5669000 5722200 5411500 4145700 4971600 5962400 4254700 7828500 258870 7339000 6264500 5859400 5798900 5501800 4351000 4873700 5695500 2 2 1 2 2 2 2 2 2 2 2 1182500000 535860000 646610000 19665 1058 18068 100277;100278;100279;100280;100281 121400;121401;121402;121403;121404 121404 5 TVFVGNHPVSETEAYIAQR Unmodified 2117.0542 0.054167421 2220 Q8NB49;Q8NB49-2;Q8NB49-3;Q8NB49-4 ATP11C Phospholipid-transporting ATPase IG yes no 0 0 0 0 By MS/MS 6 0 1 1 50.602 50.744 3 1.8281E-08 14142 20211116_3445_TMUAki_TMT10x_S_F6 107.65 96.384 1138200 1838700 52718 2073300 1064500 1015500 1039600 1621700 1567600 1305400 1662500 1060200 1716600 142470 2082700 1023300 1113400 1072100 1608700 1575000 1287900 1600800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1138200 1838700 52718 2073300 1064500 1015500 1039600 1621700 1567600 1305400 1662500 1060200 1716600 142470 2082700 1023300 1113400 1072100 1608700 1575000 1287900 1600800 1 1 1 1 1 1 1 1 1 1 1 228420000 0 228420000 19666 2220 18069 100282 121405 121405 1 TVFVVDHCPYMAESCR Oxidation (M) 1985.8434 0.84338806 2975 Q9NVM9 ASUN Protein asunder homolog yes yes 0 0 1 0 By MS/MS 5 0 1 1 42.619 42.745 3 0.0083381 10580 20211116_3444_TMUAki_TMT10x_S_F5 52.862 43.815 382790 670030 0 761090 322480 278830 256920 722630 684660 542720 631560 356410 625550 30057 762790 307510 323770 277270 706940 675920 537470 610890 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 382790 670030 0 761090 322480 278830 256920 722630 684660 542720 631560 356410 625550 30057 762790 307510 323770 277270 706940 675920 537470 610890 1 1 0 1 1 1 1 1 1 1 1 56397000 0 56397000 19667 2975 18070 100283 121406 121406 3056 1 TVGAALDILCPSGPIK Unmodified 1610.8702 0.87017839 692 P16278;P16278-2;P16278-3 GLB1 Beta-galactosidase yes no 0 0 0 0 By MS/MS 8 0 1 1 75.58 75.474 3 1.2652E-05 23985 20211116_3447_TMUAki_TMT10x_S_F8 86.497 66.448 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19668 692 18071 100284 121407 121407 1 TVGALQVLGTEAQSSLLK Unmodified 1814.0149 0.014928368 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 6.44 2.91 2 7 6 3 80.198 80.173 2;3 1.2826E-102 24850 20211116_3447_TMUAki_TMT10x_S_F8 341.16 280.76 40792000 68917000 230220 65349000 43560000 67406000 53227000 42730000 47415000 52207000 54417000 37982000 64293000 3494700 66950000 42015000 67987000 53305000 44974000 48739000 50598000 52277000 12 12 8 12 12 12 12 12 12 12 12 20358000 34222000 31477 31786000 23355000 41012000 25802000 21235000 24263000 25834000 26535000 18955000 31924000 1649300 32737000 22451000 40767000 25996000 22726000 24832000 25042000 25527000 8 8 5 8 8 8 8 8 8 8 8 20434000 34695000 198750 33563000 20204000 26394000 27425000 21496000 23151000 26373000 27882000 19027000 32369000 1845400 34212000 19564000 27220000 27309000 22249000 23907000 25556000 26750000 4 4 3 4 4 4 4 4 4 4 4 12228000000 7580400000 4647400000 19669 1433 18072 100285;100286;100287;100288;100289;100290;100291;100292;100293 121408;121409;121410;121411;121412;121413;121414;121415;121416;121417;121418;121419;121420 121420 13 TVGATALPR Unmodified 884.50797 0.50796571 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 33.849 33.913 2 0.00064028 6942 20211116_3444_TMUAki_TMT10x_S_F5 116.25 75.062 1745700 2991100 26514 2972400 3607700 3278600 2225500 1942200 2297700 1792100 2597800 1625600 2791000 195520 3038300 3426100 3291100 2331900 2037600 2345000 1756400 2496800 2 2 2 2 2 2 2 2 2 2 2 1244100 2185300 19828 2126400 3041200 2835000 1659700 1459900 1737700 1318400 1910800 1158500 2038900 146790 2184000 2882600 2813500 1758200 1549400 1770500 1293500 1838000 1 1 1 1 1 1 1 1 1 1 1 501600 805860 6686.1 846080 566500 443620 565730 482320 559980 473660 687000 467090 752100 48726 854280 543570 477620 573700 488180 574450 462960 658800 1 1 1 1 1 1 1 1 1 1 1 225020000 155360000 69652000 19670 1146 18073 100294;100295 121421;121422 121422 2 TVGATVEFTVGDKPVSNFR Unmodified 2023.0375 0.037454724 22 A6NIH7 UNC119B Protein unc-119 homolog B yes yes 0 0 0 1 By MS/MS 8 0 1 1 58.318 58.296 3 7.0586E-18 16981 20211116_3447_TMUAki_TMT10x_S_F8 154.49 136.75 1856600 3337300 9202.5 3106600 2475100 1862100 2222000 2347200 2246500 2148400 2377500 1728800 3113200 171170 3166900 2367400 1984600 2267800 2356000 2289000 2106400 2289500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1856600 3337300 9202.5 3106600 2475100 1862100 2222000 2347200 2246500 2148400 2377500 1728800 3113200 171170 3166900 2367400 1984600 2267800 2356000 2289000 2106400 2289500 1 1 1 1 1 1 1 1 1 1 1 326210000 0 326210000 19671 22 18074 100296 121423 121423 1 TVGGKEDVIWELLNHAQEHFGK Unmodified 2506.2605 0.2604718 49 CON__Q29443;CON__Q0IIK2 yes no 0 0 0 1 By matching By MS/MS 1.5 0.5 1 1 1 1 76.899 76.878 5 3.2817E-14 25225 20211116_3440_TMUAki_TMT10x_S_F2 132.1 112.13 + 1405300 2118500 0 1991900 1646100 1676800 1860900 1173200 1056200 1332700 1553200 1308400 1976300 106640 2036300 1582900 1716300 1851400 1223000 1127300 1295000 1483000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1405300 2118500 0 1991900 1646100 1676800 1860900 1173200 1056200 1332700 1553200 1308400 1976300 106640 2036300 1582900 1716300 1851400 1223000 1127300 1295000 1483000 1 1 0 1 1 1 1 1 1 1 1 794780000 351140000 443640000 19672 49 18075 100297;100298 121424 121424 1 TVGTPIASVPGSTNTGTVPGSEKDSDSMETEEK Oxidation (M) 3323.5199 0.51985471 2575 Q99460;Q99460-2 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 1 1 By MS/MS 4 0 1 1 49.166 49.322 4 0.0004565 14172 20211116_3431_TMUAki_TMT10x_P_F4 60.348 49.641 268890 418010 0 464920 625540 904130 449350 548350 605400 420930 413940 250340 390220 24718 477550 595200 885980 469840 571670 602270 416360 405240 1 1 0 1 1 1 1 1 1 1 1 268890 418010 0 464920 625540 904130 449350 548350 605400 420930 413940 250340 390220 24718 477550 595200 885980 469840 571670 602270 416360 405240 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 312230000 312230000 0 19673 2575 18076 100299 121425 121425 2810 1 TVGVEPAADGK Unmodified 1042.5295 0.52948901 1053 P46779;P46779-2;P46779-3;P46779-4;P46779-5 RPL28 60S ribosomal protein L28 yes no 0 0 0 0 By MS/MS 2 0 1 1 33.429 33.511 2 7.0416E-08 7605 20211116_3440_TMUAki_TMT10x_S_F2 123.63 83.916 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19674 1053 18077 100300 121426 121426 1 TVGVEPAADGKGVVVVIK Unmodified 1737.0036 0.0036354 1053 P46779;P46779-2;P46779-3;P46779-4;P46779-5 RPL28 60S ribosomal protein L28 yes no 0 0 0 1 By MS/MS By MS/MS 7.6 0.49 2 3 2 3 63.545 63.982 3 1.3476E-10 19294 20211116_3447_TMUAki_TMT10x_S_F8 120.24 102.84 24462000 44424000 191680 29740000 41694000 58229000 34432000 48138000 40344000 40709000 38666000 22777000 41397000 2362200 31803000 39802000 57336000 35488000 49230000 40724000 40065000 37351000 4 4 3 4 4 4 4 4 4 4 4 17682000 31936000 93269 22153000 30709000 50805000 27365000 34211000 29401000 29942000 27394000 16464000 29763000 1649500 23720000 29361000 49617000 27996000 35493000 29750000 29419000 26489000 3 3 2 3 3 3 3 3 3 3 3 6779700 12488000 98413 7586900 10985000 7423200 7066300 13927000 10943000 10767000 11271000 6313300 11634000 712710 8083600 10441000 7718500 7492600 13737000 10975000 10646000 10863000 1 1 1 1 1 1 1 1 1 1 1 2163300000 1501100000 662160000 19675 1053 18078 100301;100302;100303;100304;100305 121427;121428;121429;121430;121431;121432 121431 6 TVIDYNGER Unmodified 1065.5091 0.50908792 533 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 35.323 35.193 2 0.00018443 11308 20211116_3441_TMUAki_TMT10x_S_F3 135.71 108.19 1739200 2883000 12183 3139100 3707400 2744700 2154100 2014800 2263500 1579900 2627800 1619400 2691100 170090 3178400 3515700 2804100 2269600 2072400 2310900 1560900 2523700 3 3 1 3 3 3 3 3 3 3 3 865010 1439700 12183 1652600 2718400 1941500 1188900 1131300 1189300 790360 1326000 805500 1344200 109030 1675200 2568800 1941800 1285900 1181000 1214700 785950 1274900 1 1 1 1 1 1 1 1 1 1 1 874210 1443300 0 1486400 989050 803280 965230 883500 1074200 789500 1301800 813880 1346900 61062 1503100 946900 862270 983690 891420 1096200 774940 1248800 2 2 0 2 2 2 2 2 2 2 2 86720000 37416000 49304000 19676 533 18079 100306;100307;100308 121433;121434;121435 121435 3 TVIEPMASEGLR Oxidation (M) 1317.6599 0.65985126 737 P20020;P20020-5;P20020-2;P20020-6;P20020-4;P20020-1 ATP2B1 Plasma membrane calcium-transporting ATPase 1 yes no 0 0 1 0 By MS/MS 3 0 1 1 37.597 37.623 2 0.0068073 11000 20211116_3430_TMUAki_TMT10x_P_F3 70.389 51.295 217290 313300 0 419170 559920 585460 284070 275500 346820 259050 367880 202310 292740 13325 422640 529900 579210 304510 295260 350830 253680 354230 3 3 0 3 3 3 3 3 3 3 3 217290 313300 0 419170 559920 585460 284070 275500 346820 259050 367880 202310 292740 13325 422640 529900 579210 304510 295260 350830 253680 354230 3 3 0 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9723700 9723700 0 19677 737 18080 100309 121436;121437;121438 121437 845 3 TVIESSPESPVTITEPYR Unmodified 2004.0052 0.0051515425 2287 Q8TEQ6 GEMIN5 Gem-associated protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 57.702 57.649 3 9.9087E-08 17988 20211116_3442_TMUAki_TMT10x_S_F4 102.03 78.928 9766200 16240000 31000 15891000 11208000 14428000 10375000 11981000 11328000 12284000 13435000 9092600 15152000 738920 16214000 10720000 14734000 10597000 12314000 11557000 11985000 12895000 2 2 1 2 2 2 2 2 2 2 2 4794300 7711100 31000 7670000 5913500 9898700 5889900 5940900 5616700 6058800 6537900 4464200 7195100 442050 7860900 5671400 9857700 5967200 6243500 5758700 5912500 6278300 1 1 1 1 1 1 1 1 1 1 1 4971900 8528800 0 8220700 5294700 4529800 4484900 6040000 5710800 6225700 6896700 4628400 7957100 296870 8353000 5048600 4876200 4629500 6070400 5798100 6072700 6616300 1 1 0 1 1 1 1 1 1 1 1 1453200000 1109800000 343430000 19678 2287 18081 100310;100311;100312 121439;121440 121440 2 TVIGELPPASSGSALAANVCK Unmodified 2041.0514 0.051390229 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 7 0.707 1 2 1 3 1 63.527 63.906 3 7.2535E-27 21414 20211116_3446_TMUAki_TMT10x_S_F7 175.21 149.62 22409000 39530000 293710 37769000 26988000 33426000 24859000 30692000 28083000 30109000 31506000 20867000 36879000 2163800 38590000 25839000 34259000 25427000 31326000 28550000 29430000 30287000 9 9 6 9 9 9 9 9 9 9 9 6347600 10998000 137220 11055000 8190600 14978000 8409200 8641700 8327200 8404900 8583700 5911200 10263000 678810 11333000 7867200 14874000 8515800 9098900 8484200 8218400 8272500 3 3 2 3 3 3 3 3 3 3 3 16061000 28532000 156490 26714000 18797000 18448000 16450000 22050000 19756000 21704000 22922000 14956000 26616000 1485000 27257000 17972000 19384000 16911000 22227000 20066000 21211000 22014000 6 6 4 6 6 6 6 6 6 6 6 2874400000 1881800000 992660000 19679 2116 18082 100313;100314;100315;100316 121441;121442;121443;121444;121445;121446;121447;121448;121449;121450 121447 10 TVIGELPPASSGSALAANVCKK Unmodified 2169.1464 0.14635325 2116 Q86VP6;Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 3 1 2 58.253 58.053 4 3.7202E-14 19317 20211116_3439_TMUAki_TMT10x_S_F1 125.88 115.2 25114000 42648000 422450 44089000 33389000 45551000 30760000 34326000 29983000 31975000 35740000 23387000 39801000 2559600 44898000 31973000 46061000 31315000 35396000 30740000 31325000 34298000 7 7 6 7 7 7 7 7 7 7 7 15815000 27012000 276110 27157000 23335000 36704000 22284000 22111000 19002000 20578000 22773000 14727000 25206000 1641700 27837000 22363000 36475000 22557000 23171000 19609000 20161000 21852000 4 4 3 4 4 4 4 4 4 4 4 9299300 15636000 146340 16932000 10055000 8846600 8476700 12215000 10980000 11397000 12966000 8659700 14595000 917940 17061000 9610100 9586700 8758300 12225000 11131000 11164000 12447000 3 3 3 3 3 3 3 3 3 3 3 1761500000 800910000 960560000 19680 2116 18083 100317;100318;100319 121451;121452;121453;121454;121455;121456;121457 121456 7 TVIGSVLLR Unmodified 956.60187 0.6018661 70 O00203;O00203-3 AP3B1 AP-3 complex subunit beta-1 yes no 0 0 0 0 By MS/MS 3 0 1 1 57.689 57.457 2 0.02909 19136 20211116_3430_TMUAki_TMT10x_P_F3 60.118 40.121 2141700 3592800 24283 3943700 3732800 5075700 3113300 2709000 2859300 2787300 2960700 1994300 3353800 222470 4015300 3565100 5047800 3182500 2876100 2923500 2718900 2853000 1 1 1 1 1 1 1 1 1 1 1 2141700 3592800 24283 3943700 3732800 5075700 3113300 2709000 2859300 2787300 2960700 1994300 3353800 222470 4015300 3565100 5047800 3182500 2876100 2923500 2718900 2853000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 219260000 219260000 0 19681 70 18084 100320 121458 121458 1 TVIIEQSWGSPK Unmodified 1343.7085 0.70851601 613 P10809;P10809-2 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 6.71 1.03 2 4 4 4 7 7 57.869 58.112 2;3 1.7643E-30 17374 20211116_3436_TMUAki_TMT10x_P_F8 266.26 217.2 150120000 230260000 441270 271610000 197330000 179450000 165000000 108360000 94539000 113930000 173140000 139760000 215010000 11937000 272790000 188320000 186900000 166880000 113930000 102050000 111040000 164590000 19 19 6 19 19 19 19 19 19 19 19 67862000 99418000 205610 118530000 121130000 122060000 88640000 52181000 46092000 54000000 77104000 63184000 92839000 6038500 119620000 115300000 122560000 90293000 56635000 49853000 52664000 73419000 9 9 4 9 9 9 9 9 9 9 9 82253000 130840000 235660 153080000 76207000 57390000 76363000 56182000 48447000 59934000 96034000 76579000 122170000 5898700 153170000 73021000 64340000 76586000 57295000 52197000 58380000 91168000 10 10 2 10 10 10 10 10 10 10 10 26220000000 13089000000 13131000000 19682 613 18085 100321;100322;100323;100324;100325;100326;100327;100328;100329;100330;100331;100332;100333;100334 121459;121460;121461;121462;121463;121464;121465;121466;121467;121468;121469;121470;121471;121472;121473;121474;121475;121476;121477;121478 121467 20 TVIIHDRPDITHPR Unmodified 1668.906 0.90598704 2986 Q9NWH9;Q9NWH9-3 SLTM SAFB-like transcription modulator yes no 0 0 0 1 By MS/MS 4.67 0.471 1 2 3 31.697 31.665 4;5 3.0069E-07 7383 20211116_3433_TMUAki_TMT10x_P_F5 120.54 91.214 661100 956150 5143.4 953480 1036300 1078500 697950 548430 605140 563100 787750 615580 892180 63592 974760 985360 1079100 722780 584800 626160 549350 754260 2 2 1 2 2 2 2 2 2 2 2 661100 956150 5143.4 953480 1036300 1078500 697950 548430 605140 563100 787750 615580 892180 63592 974760 985360 1079100 722780 584800 626160 549350 754260 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 89735000 89735000 0 19683 2986 18086 100335;100336;100337 121479;121480 121480 2 TVIKKDEQEHEFYK Unmodified 1792.8996 0.89956426 1032 P43686;P43686-2 PSMC4 26S protease regulatory subunit 6B yes no 0 0 0 2 By MS/MS 5 0 1 1 37.053 37.215 5 0.0025949 8427 20211116_3444_TMUAki_TMT10x_S_F5 63.894 49.639 431550 728980 9138.4 703190 471920 375450 472580 597830 611330 456720 624920 401880 680120 44860 714290 453070 407690 483620 592390 616330 451870 602420 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 431550 728980 9138.4 703190 471920 375450 472580 597830 611330 456720 624920 401880 680120 44860 714290 453070 407690 483620 592390 616330 451870 602420 1 1 1 1 1 1 1 1 1 1 1 30664000 0 30664000 19684 1032 18087 100338 121481 121481 1 TVINFTMPNTIK Unmodified 1377.7326 0.73262227 2476 Q96GQ7 DDX27 Probable ATP-dependent RNA helicase DDX27 yes yes 0 0 0 0 By MS/MS 3 0 1 1 68.944 68.661 3 0.0001832 23736 20211116_3430_TMUAki_TMT10x_P_F3 85.522 63.324 1537000 2128600 12984 2313100 1794800 2457800 1865600 1219900 1182200 1401600 1698200 1431200 1986900 143140 2348900 1723500 2467100 1867500 1308200 1250900 1361300 1622200 1 1 1 1 1 1 1 1 1 1 1 1537000 2128600 12984 2313100 1794800 2457800 1865600 1219900 1182200 1401600 1698200 1431200 1986900 143140 2348900 1723500 2467100 1867500 1308200 1250900 1361300 1622200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 235570000 235570000 0 19685 2476 18088 100339 121482 121482 1 TVINFTMPNTIK Oxidation (M) 1393.7275 0.72753689 2476 Q96GQ7 DDX27 Probable ATP-dependent RNA helicase DDX27 yes yes 0 0 1 0 By MS/MS 2 0 1 1 58.846 58.618 3 0.017047 17837 20211116_3440_TMUAki_TMT10x_S_F2 59.116 43.226 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19686 2476 18088 100340 121483 121483 2770 1 TVIPGMPTVIPPGLTR Oxidation (M) 1663.9331 0.93311299 1819;1820 Q15637;Q15637-6;Q15637-4;Q15637-2;Q15637-3;Q15637-7;Q15637-5 SF1 Splicing factor 1 no no 0 0 1 0 By MS/MS By MS/MS 2.36 0.481 7 4 5 6 63.947 63.622 2;3 3.9337E-05 21288 20211116_3429_TMUAki_TMT10x_P_F2 97.163 68.076 17974000 30058000 135630 29707000 23856000 34675000 21775000 25018000 24445000 23741000 24982000 16736000 28046000 1609400 30405000 22825000 34801000 22279000 25885000 24770000 23239000 24082000 9 9 5 9 9 9 9 9 9 9 9 12208000 20443000 124020 19811000 17055000 28112000 16028000 17121000 16709000 16064000 16909000 11367000 19073000 1166000 20379000 16333000 27880000 16333000 17931000 16976000 15732000 16305000 6 6 4 6 6 6 6 6 6 6 6 5766300 9614900 11607 9896300 6801200 6563300 5747600 7896500 7735500 7677000 8072400 5368600 8972800 443470 10026000 6491700 6921800 5946700 7954800 7794500 7506800 7776700 3 3 1 3 3 3 3 3 3 3 3 4046100000 2826900000 1219100000 19687 1819;1820 18089 100341;100342;100343;100344;100345;100346;100347;100348;100349;100350;100351 121484;121485;121486;121487;121488;121489;121490;121491;121492;121493;121494;121495 121487 2438 12 TVIPGMPTVIPPGLTR Unmodified 1647.9382 0.93819837 1819;1820 Q15637;Q15637-6;Q15637-4;Q15637-2;Q15637-3;Q15637-7;Q15637-5 SF1 Splicing factor 1 no no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 2 4 3 3 76.414 76.373 2;3 1.7139E-28 25139 20211116_3431_TMUAki_TMT10x_P_F4 180.18 121.2 24943000 41409000 229460 37975000 28975000 31686000 30421000 18262000 17511000 20231000 29740000 23225000 38626000 2269800 38889000 27829000 32366000 30382000 19304000 18813000 19678000 28311000 8 8 4 8 8 8 8 8 8 8 8 12594000 19596000 191960 18018000 11680000 19374000 14507000 9223700 9207700 10104000 14721000 11728000 18279000 1182000 18513000 11281000 19425000 14403000 9916600 9794800 9832100 14030000 4 4 3 4 4 4 4 4 4 4 4 12349000 21814000 37499 19957000 17295000 12312000 15914000 9038400 8303300 10127000 15020000 11498000 20348000 1087900 20376000 16548000 12940000 15979000 9387400 9018500 9845700 14281000 4 4 1 4 4 4 4 4 4 4 4 3372800000 1949100000 1423700000 19688 1819;1820 18089 100352;100353;100354;100355;100356;100357 121496;121497;121498;121499;121500;121501;121502;121503;121504 121499 9 TVITEEFKVPDK Unmodified 1404.75 0.75004648 2494 Q96I24;Q96I24-2 FUBP3 Far upstream element-binding protein 3 yes no 0 0 0 1 By matching By MS/MS 6 0 2 1 1 55.409 55.497 3 8.3907E-05 16086 20211116_3445_TMUAki_TMT10x_S_F6 97.203 59.25 8230600 12657000 116060 14936000 7013600 5975000 6241300 10752000 11248000 9728800 12273000 7664400 11819000 773490 14942000 6712600 6747000 6526200 10660000 11260000 9543800 11807000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8230600 12657000 116060 14936000 7013600 5975000 6241300 10752000 11248000 9728800 12273000 7664400 11819000 773490 14942000 6712600 6747000 6526200 10660000 11260000 9543800 11807000 1 1 1 1 1 1 1 1 1 1 1 1053000000 597350000 455630000 19689 2494 18090 100358;100359 121505 121505 1 TVITPDPNLSIDQVGVPR Unmodified 1920.0316 0.031641064 796 P24928;P24928-2 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 0 0 0 0 By MS/MS 6 0 1 1 66.991 66.924 2 2.9545E-52 20792 20211116_3445_TMUAki_TMT10x_S_F6 233.24 186.77 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19690 796 18091 100360 121506 121506 1 TVIVAALDGTFQR Unmodified 1389.7616 0.76161421 485 P04183 TK1 Thymidine kinase, cytosolic yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 1 3 70.145 70.06 2 5.5446E-23 24233 20211116_3439_TMUAki_TMT10x_S_F1 214.82 164.12 12494000 21768000 187960 18732000 13414000 14601000 14921000 10398000 9235900 10963000 13798000 11634000 20301000 1223900 19263000 12911000 15035000 14881000 10801000 9806600 10684000 13169000 3 3 3 3 3 3 3 3 3 3 3 4719700 7765200 72695 6685500 4191600 6914100 5830700 4019000 3594700 3994700 4782000 4395000 7241700 451650 6900000 4064700 6964500 5759400 4231600 3796900 3902400 4576200 1 1 1 1 1 1 1 1 1 1 1 7774300 14003000 115270 12047000 9222300 7687300 9090800 6379000 5641200 6968200 9015800 7239500 13059000 772240 12363000 8846400 8070800 9121300 6569400 6009700 6781200 8592700 2 2 2 2 2 2 2 2 2 2 2 1175600000 821570000 354020000 19691 485 18092 100361;100362;100363;100364 121507;121508;121509;121510;121511 121508 5 TVIVHGFTLGEK Unmodified 1299.7187 0.71868677 2942 Q9NSE4 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 0 0 0 0 By MS/MS 8 0 1 1 52.927 52.846 3 0.022524 14778 20211116_3447_TMUAki_TMT10x_S_F8 56.139 38.814 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19692 2942 18093 100365 121512 121512 1 TVIVNMVDVAK Unmodified 1187.6584 0.6583947 1231 P55010 EIF5 Eukaryotic translation initiation factor 5 yes yes 0 0 0 0 By MS/MS 7 0 1 1 63.443 64.115 2 0.00013821 21060 20211116_3435_TMUAki_TMT10x_P_F7 93.096 75.276 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19693 1231 18094 100366 121513 121513 1 TVKEEAEKPER Unmodified 1314.6779 0.67794416 666 P14314;P14314-2 PRKCSH Glucosidase 2 subunit beta yes no 0 0 0 2 By MS/MS 4.5 0.5 2 2 4 29.563 29.549 3;4 5.7344E-06 6200 20211116_3431_TMUAki_TMT10x_P_F4 119.25 97.953 952640 1537100 1191.6 1282200 1235200 1631300 1063900 682530 781330 801410 1156700 886950 1433300 75887 1331300 1179600 1619000 1079400 745380 820560 777800 1104200 3 3 2 3 3 3 3 3 3 3 3 952640 1537100 1191.6 1282200 1235200 1631300 1063900 682530 781330 801410 1156700 886950 1433300 75887 1331300 1179600 1619000 1079400 745380 820560 777800 1104200 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 68497000 68497000 0 19694 666 18095 100367;100368;100369;100370 121514;121515;121516 121515 3 TVKGPDGLTAFEATDNQAIK Unmodified 2075.0535 0.053498719 1268 P58546 MTPN Myotrophin yes yes 0 0 0 1 By MS/MS By MS/MS 5.78 0.916 1 2 4 2 6 3 56.563 56.76 3;4 8.1265E-32 16570 20211116_3445_TMUAki_TMT10x_S_F6 181.14 154.66 31407000 56431000 370540 45677000 44612000 51337000 33991000 43360000 50433000 41502000 47258000 29245000 52616000 2990100 47442000 42522000 51770000 35543000 44432000 50475000 40609000 45687000 8 8 5 8 8 8 8 8 8 8 8 13637000 23304000 287290 19447000 25309000 34956000 21165000 18404000 21493000 17531000 20265000 12698000 21731000 1464100 20344000 24174000 34282000 21695000 19521000 21808000 17158000 19587000 4 4 3 4 4 4 4 4 4 4 4 17770000 33128000 83255 26230000 19303000 16381000 12827000 24956000 28940000 23971000 26994000 16546000 30886000 1526000 27099000 18348000 17488000 13848000 24911000 28667000 23452000 26100000 4 4 2 4 4 4 4 4 4 4 4 5841200000 3834300000 2007000000 19695 1268 18096 100371;100372;100373;100374;100375;100376;100377;100378;100379 121517;121518;121519;121520;121521;121522;121523;121524;121525;121526 121522 10 TVLDPVTGDLSDTR Unmodified 1487.7468 0.74675201 1798 Q15393 SF3B3 Splicing factor 3B subunit 3 yes yes 0 0 0 0 By MS/MS By MS/MS 3.43 0.728 1 2 4 4 3 56.64 56.545 2;3 1.6098E-71 19741 20211116_3441_TMUAki_TMT10x_S_F3 317.44 278.13 17387000 27770000 48910 30526000 24649000 32439000 19786000 24708000 24340000 21854000 24162000 16188000 25923000 1399300 30975000 23503000 32755000 20465000 25426000 24556000 21461000 23314000 9 9 3 9 9 9 9 9 9 9 9 11401000 18012000 48910 19851000 19804000 27661000 15684000 16221000 16069000 14289000 15915000 10615000 16814000 1021800 20238000 18883000 27440000 16137000 17012000 16325000 14035000 15358000 6 6 3 6 6 6 6 6 6 6 6 5985300 9757900 0 10675000 4844200 4778000 4101400 8486800 8270600 7565000 8247000 5572100 9108600 377580 10737000 4619500 5314600 4328100 8414000 8230600 7426400 7956300 3 3 0 3 3 3 3 3 3 3 3 3688200000 2067100000 1621100000 19696 1798 18097 100380;100381;100382;100383;100384;100385;100386 121527;121528;121529;121530;121531;121532;121533;121534;121535 121533 9 TVLEHYALEDDPLAAFK Unmodified 1930.9676 0.96764382 1890 Q3ZCQ8-2;Q3ZCQ8;Q3ZCQ8-3 TIMM50 Mitochondrial import inner membrane translocase subunit TIM50 yes no 0 0 0 0 By MS/MS By MS/MS 2.8 0.748 2 2 1 2 3 77.09 77.013 3 1.1128E-15 28053 20211116_3441_TMUAki_TMT10x_S_F3 151.8 127.26 16099000 27058000 125240 25618000 21014000 20026000 21107000 12462000 12192000 12678000 17960000 14989000 25243000 1239300 26152000 20141000 20576000 21129000 13059000 12998000 12373000 17147000 4 4 2 4 4 4 4 4 4 4 4 4052300 6974800 0 5664300 3477100 6106300 4313800 3583700 3140800 3424000 4190200 3772200 6503400 216030 5877700 3347800 6136800 4295600 3766200 3283800 3350600 4009700 1 1 0 1 1 1 1 1 1 1 1 12047000 20083000 125240 19953000 17537000 13920000 16793000 8878600 9051600 9253600 13770000 11216000 18739000 1023200 20275000 16793000 14439000 16833000 9292700 9714600 9022100 13137000 3 3 2 3 3 3 3 3 3 3 3 3279700000 1262400000 2017300000 19697 1890 18098 100387;100388;100389;100390;100391 121536;121537;121538;121539 121538 4 TVLELQYVLDKLGDDEVR Unmodified 2104.1052 0.10519994 1709 Q14444;Q14444-2 CAPRIN1 Caprin-1 yes no 0 0 0 1 By matching By MS/MS 2 0 2 1 1 79.829 79.811 3 0.029904 26422 20211116_3440_TMUAki_TMT10x_S_F2 41.905 30.291 2130300 3785700 70799 3443800 2899500 3232100 3194700 2018700 2102400 2394400 2845800 1984000 3531200 253370 3534200 2791900 3278400 3191300 2124900 2213000 2323000 2722200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2130300 3785700 70799 3443800 2899500 3232100 3194700 2018700 2102400 2394400 2845800 1984000 3531200 253370 3534200 2791900 3278400 3191300 2124900 2213000 2323000 2722200 1 1 1 1 1 1 1 1 1 1 1 1209600000 792080000 417540000 19698 1709 18099 100392;100393 121540 121540 1 TVLEQVLPI Unmodified 1010.6012 0.60119739 804 P25685;P25685-2 DNAJB1 DnaJ homolog subfamily B member 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 1.12 2 2 2 2 4 4 80.367 80.351 2 0.0016361 27224 20211116_3442_TMUAki_TMT10x_S_F4 95.541 83.636 15837000 26525000 119480 24578000 20427000 25031000 21524000 16996000 16737000 18950000 21979000 14746000 24743000 1376400 25218000 19614000 25291000 21627000 17744000 17423000 18427000 21040000 7 7 3 7 7 7 7 7 7 7 7 7142600 11577000 22919 10201000 8142200 14336000 8758900 8004600 7729900 8357800 9827000 6649800 10797000 523710 10566000 7817200 14207000 8820400 8468700 7983300 8148100 9414800 3 3 1 3 3 3 3 3 3 3 3 8694800 14948000 96559 14377000 12285000 10694000 12765000 8991100 9007200 10592000 12152000 8096400 13946000 852650 14652000 11797000 11084000 12806000 9275400 9439300 10279000 11625000 4 4 2 4 4 4 4 4 4 4 4 6097800000 2598600000 3499200000 19699 804 18100 100394;100395;100396;100397;100398;100399;100400;100401 121541;121542;121543;121544;121545;121546;121547;121548 121546 8 TVLFTNAR Unmodified 920.50797 0.50796571 1010 P42285 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 0 0 0 0 By MS/MS 1 0 1 1 41.782 41.782 2 0.014029 10706 20211116_3428_TMUAki_TMT10x_P_F1 78.377 46.249 1484000 2323200 0 2748000 4564500 3970900 2171700 2305700 2546600 1839300 2321400 1381600 2169400 147570 2791700 4315300 3932400 2339600 2414400 2566300 1815500 2246300 1 1 0 1 1 1 1 1 1 1 1 1484000 2323200 0 2748000 4564500 3970900 2171700 2305700 2546600 1839300 2321400 1381600 2169400 147570 2791700 4315300 3932400 2339600 2414400 2566300 1815500 2246300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 41591000 41591000 0 19700 1010 18101 100402 121549 121549 1 TVLGTPEVLLGALPGAGGTQR Unmodified 2006.116 0.1160394 992 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 0 By MS/MS By MS/MS 2.57 2.26 2 4 1 3 4 78.204 78.168 2;3 2.6951E-67 25741 20211116_3440_TMUAki_TMT10x_S_F2 239.75 214.89 26436000 44935000 118750 34934000 30365000 43403000 34055000 31673000 28513000 31658000 33942000 24613000 41892000 2024600 36472000 29194000 43430000 34179000 32794000 29442000 30919000 32574000 7 7 2 7 7 7 7 7 7 7 7 15548000 25207000 118750 19581000 13878000 28276000 18102000 18724000 17020000 18280000 18811000 14476000 23500000 1146100 20503000 13406000 28055000 18108000 19506000 17426000 17871000 18091000 4 4 2 4 4 4 4 4 4 4 4 10888000 19728000 0 15354000 16487000 15126000 15953000 12949000 11492000 13378000 15130000 10137000 18392000 878470 15969000 15789000 15375000 16072000 13289000 12016000 13048000 14483000 3 3 0 3 3 3 3 3 3 3 3 7164700000 4196800000 2967800000 19701 992 18102 100403;100404;100405;100406;100407;100408;100409 121550;121551;121552;121553;121554;121555;121556;121557 121556 8 TVLIMELINNVAK Oxidation (M) 1472.8273 0.82725094 518 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 2.22 0.786 2 3 4 6 3 79.767 79.734 2;3 3.0028E-11 29103 20211116_3441_TMUAki_TMT10x_S_F3 148.91 126.08 30707000 53082000 406220 42034000 31239000 55512000 37691000 40586000 44301000 42606000 42347000 28592000 49490000 2700500 43864000 30125000 55386000 38099000 42078000 44710000 41528000 40911000 7 7 6 7 7 7 7 7 7 7 7 17373000 29787000 228200 23161000 15759000 36763000 19370000 22450000 24275000 22354000 23965000 16176000 27769000 1399100 24300000 15200000 36291000 19611000 23545000 24470000 21836000 23128000 4 4 3 4 4 4 4 4 4 4 4 13334000 23295000 178020 18873000 15480000 18750000 18321000 18136000 20026000 20252000 18382000 12416000 21720000 1301400 19564000 14925000 19095000 18488000 18533000 20240000 19692000 17783000 3 3 3 3 3 3 3 3 3 3 3 20737000000 14152000000 6585400000 19702 518 18103 100410;100411;100412;100413;100414;100415;100416;100417;100418 121558;121559;121560;121561;121562;121563;121564 121563 427 7 TVLIMELINNVAK Unmodified 1456.8323 0.83233632 518 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.816 4 4 4 6 6 81.391 81.371 2;3 3.5681E-79 27256 20211116_3431_TMUAki_TMT10x_P_F4 353.5 289.46 81823000 126660000 550630 121310000 78538000 86120000 92562000 27218000 22402000 39124000 76574000 76185000 118170000 6649700 123610000 75653000 88580000 90985000 31002000 27782000 37720000 72191000 15 15 7 15 15 15 15 15 15 15 15 51979000 79901000 179980 75395000 49625000 64140000 57827000 16593000 13730000 24931000 48068000 48395000 74539000 3938200 77065000 47767000 64967000 56863000 19520000 17116000 24006000 45306000 8 8 4 8 8 8 8 8 8 8 8 29844000 46763000 370660 45916000 28913000 21980000 34735000 10625000 8672100 14193000 28506000 27790000 43632000 2711600 46543000 27886000 23613000 34122000 11482000 10667000 13714000 26885000 7 7 3 7 7 7 7 7 7 7 7 12489000000 7089400000 5400100000 19703 518 18103 100419;100420;100421;100422;100423;100424;100425;100426;100427;100428;100429;100430 121565;121566;121567;121568;121569;121570;121571;121572;121573;121574;121575;121576;121577;121578;121579 121570 15 TVLPFSQEFQR Unmodified 1350.6932 0.6932003 2060 Q7L576;Q7L576-2;Q7L576-3 CYFIP1 Cytoplasmic FMR1-interacting protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 61.512 62.113 2 1.2933E-15 20740 20211116_3446_TMUAki_TMT10x_S_F7 200.71 164.01 10115000 17142000 48883 15247000 13587000 18315000 12736000 12727000 11496000 12694000 13647000 9418700 15988000 924560 15734000 13009000 18343000 12925000 13221000 11826000 12399000 13098000 3 3 2 3 3 3 3 3 3 3 3 6528300 10509000 16562 9577900 9047400 14072000 8856500 7362600 6914200 7722100 8290900 6078600 9802200 583700 9904000 8670700 13908000 8933400 7835200 7167800 7527000 7955300 2 2 1 2 2 2 2 2 2 2 2 3587100 6633200 32321 5669300 4540000 4242300 3879300 5364300 4582200 4971400 5356400 3340200 6185900 340860 5830400 4338500 4435000 3991200 5385700 4658300 4871600 5143200 1 1 1 1 1 1 1 1 1 1 1 1161400000 529020000 632390000 19704 2060 18104 100431;100432 121580;121581;121582 121582 3 TVLQEIKR Unmodified 985.59203 0.59202969 2146 Q8IWS0;Q8IWS0-5;Q8IWS0-3;Q8IWS0-2;Q8IWS0-4 PHF6 PHD finger protein 6 yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 39.278 39.624 3 0.012101 9304 20211116_3447_TMUAki_TMT10x_S_F8 70.908 34.527 2608900 3852200 27594 4618600 4951600 3932500 2898400 3024300 3101800 2748900 3519000 2429300 3597300 268130 4647300 4697400 4028000 3053600 3112500 3161400 2696100 3381800 3 3 2 3 3 3 3 3 3 3 3 1494500 2189600 3998 2564300 3642100 2837000 1675900 1724700 1734700 1559400 1962200 1391500 2044600 151020 2593600 3442600 2848300 1804500 1804700 1770300 1529800 1885800 2 2 1 2 2 2 2 2 2 2 2 1114400 1662500 23596 2054300 1309500 1095500 1222600 1299600 1367100 1189500 1556900 1037800 1552800 117120 2053700 1254800 1179700 1249100 1307700 1391200 1166300 1496000 1 1 1 1 1 1 1 1 1 1 1 130000000 70174000 59823000 19705 2146 18105 100433;100434;100435 121583;121584;121585 121585 3 TVLQIDDNVTSAVEGINR Unmodified 1942.996 0.99598384 1829 Q15785 TOMM34 Mitochondrial import receptor subunit TOM34 yes yes 0 0 0 0 By MS/MS By MS/MS 4.36 0.881 2 4 4 1 4 7 71.088 70.992 2;3 5.3108E-133 23450 20211116_3442_TMUAki_TMT10x_S_F4 378.5 297.16 16618000 28734000 164740 26484000 20677000 27175000 21124000 18641000 17781000 19702000 22177000 15473000 26804000 1461300 27187000 19839000 27450000 21300000 19415000 18391000 19198000 21257000 10 10 5 10 10 10 10 10 10 10 10 8894500 14708000 54860 13620000 9896100 18201000 11190000 9655400 9326500 10547000 11496000 8281200 13720000 698880 14040000 9518000 18067000 11226000 10275000 9646700 10264000 11023000 5 5 1 5 5 5 5 5 5 5 5 7723500 14026000 109880 12863000 10781000 8974000 9933100 8985600 8454100 9154900 10680000 7192000 13084000 762440 13147000 10321000 9382300 10074000 9140400 8744300 8934200 10234000 5 5 4 5 5 5 5 5 5 5 5 4980700000 2478700000 2502000000 19706 1829 18106 100436;100437;100438;100439;100440;100441;100442;100443;100444;100445;100446 121586;121587;121588;121589;121590;121591;121592;121593;121594;121595;121596;121597 121594 12 TVLQRPLSLIQGPPGTGK Unmodified 1861.0785 0.078531678 2376 Q92900;Q92900-2 UPF1 Regulator of nonsense transcripts 1 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 59.375 59.455 3;4 7.1466E-06 17374 20211116_3444_TMUAki_TMT10x_S_F5 90.422 66.59 24752000 47654000 279790 51355000 28768000 23914000 25500000 24685000 25001000 25759000 32936000 23047000 44480000 2069300 51719000 27499000 26072000 26021000 25091000 25737000 25113000 31527000 4 4 3 4 4 4 4 4 4 4 4 1627300 2816500 35668 3123800 2256300 3705100 2131700 1734300 1987700 2175300 2232000 1515500 2629200 176970 3173800 2162400 3694400 2164300 1875900 2037100 2106300 2145600 1 1 1 1 1 1 1 1 1 1 1 23125000 44837000 244120 48232000 26511000 20209000 23368000 22951000 23013000 23584000 30704000 21531000 41851000 1892300 48545000 25337000 22377000 23857000 23216000 23700000 23007000 29381000 3 3 2 3 3 3 3 3 3 3 3 3634900000 1241200000 2393700000 19707 2376 18107 100447;100448;100449;100450 121598;121599;121600;121601 121601 4 TVLQYRPVHIDPISR Unmodified 1792.9948 0.99480205 2161 Q8IXT5 RBM12B RNA-binding protein 12B yes yes 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 45.915 45.754 4 1.9985E-09 13855 20211116_3429_TMUAki_TMT10x_P_F2 126.07 107.26 4551600 7839400 53960 8236400 6735900 7563700 5198300 6600200 6463700 5757000 6997700 4238300 7316400 447740 8364300 6422600 7725200 5392400 6734000 6539300 5657300 6733900 3 3 2 3 3 3 3 3 3 3 3 2346100 4292300 53960 4530900 4670700 5798100 3105600 3706300 3661000 3169200 3863700 2184800 4006100 277350 4624300 4442400 5781500 3249100 3857800 3707300 3117300 3720900 2 2 2 2 2 2 2 2 2 2 2 2205600 3547100 0 3705500 2065200 1765700 2092700 2893900 2802700 2587800 3134000 2053500 3310400 170390 3740000 1980300 1943700 2143300 2876200 2832000 2540000 3013000 1 1 0 1 1 1 1 1 1 1 1 1101600000 685910000 415640000 19708 2161 18108 100451;100452 121602;121603;121604 121602 3 TVLSHQGAVCEFCQPR Unmodified 1887.872 0.87198608 843 P28340 POLD1 DNA polymerase delta catalytic subunit yes yes 0 0 0 0 By MS/MS 6 0 2 2 37.33 37.326 3 1.2356E-06 8400 20211116_3434_TMUAki_TMT10x_P_F6 97.933 84.216 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19709 843 18109 100453;100454 121605;121606 121606 2 TVLSNVQEELDR Unmodified 1401.71 0.70997257 202 O43237;O43237-2 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 57.191 56.873 2 5.2919E-46 17624 20211116_3442_TMUAki_TMT10x_S_F4 278.95 206.81 5361900 8620000 7012.8 8944200 6237200 7374600 5144500 6100200 6536000 5523600 7020500 4992400 8044600 443330 9078200 5952200 7580900 5318500 6249300 6605500 5418400 6757400 2 2 1 2 2 2 2 2 2 2 2 2370500 3603300 0 3976800 3484600 5073500 2857000 2740600 2951600 2421100 3018200 2207000 3363600 192130 4047000 3324100 5048400 2933700 2894700 3001000 2377700 2909400 1 1 0 1 1 1 1 1 1 1 1 2991400 5016700 7012.8 4967400 2752700 2301100 2287500 3359600 3584300 3102600 4002300 2785300 4680900 251200 5031200 2628100 2532500 2384800 3354700 3604500 3040700 3847900 1 1 1 1 1 1 1 1 1 1 1 363330000 158060000 205270000 19710 202 18110 100455;100456;100457 121607;121608;121609 121609 3 TVLSSAR Unmodified 732.413 0.41300269 1976 Q6GYQ0;Q6GYQ0-2;Q6GYQ0-4;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 yes no 0 0 0 0 By MS/MS 5 0 1 1 29.534 29.467 2 0.040275 6498 20211116_3433_TMUAki_TMT10x_P_F5 74.396 17.855 354440 553330 2006.6 488890 593710 642380 490750 476800 461910 403950 497900 330030 516080 34607 505600 566810 641230 502280 490950 472460 397520 479200 1 1 1 1 1 1 1 1 1 1 1 354440 553330 2006.6 488890 593710 642380 490750 476800 461910 403950 497900 330030 516080 34607 505600 566810 641230 502280 490950 472460 397520 479200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7320100 7320100 0 19711 1976 18111 100458 121610 121610 1 TVLTAADVLPDGPFPQDEK Unmodified 2012.0102 0.01023692 2815 Q9H6E4 CCDC134 Coiled-coil domain-containing protein 134 yes yes 0 0 0 0 By MS/MS 4 0 1 1 76.319 76.251 3 2.9433E-05 25567 20211116_3442_TMUAki_TMT10x_S_F4 81.643 66.051 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19712 2815 18112 100459 121611 121611 1 TVLVIAHR Unmodified 907.56034 0.56033563 1507 Q9NUT2;Q03519;Q9NRK6;Q9NUT2-5;Q9NUT2-4;Q9NUT2-2 ABCB8;TAP2;ABCB10 ATP-binding cassette sub-family B member 8, mitochondrial;Antigen peptide transporter 2;ATP-binding cassette sub-family B member 10, mitochondrial yes no 0 0 0 0 By matching By MS/MS 1 0 2 1 1 34.202 34.197 3 0.00094124 9596 20211116_3439_TMUAki_TMT10x_S_F1 108.46 83.538 127960 214840 4233.7 249100 135780 118970 131910 168700 163170 150790 143930 119180 200600 14664 249760 130350 130340 134980 168470 163950 148010 139440 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 127960 214840 4233.7 249100 135780 118970 131910 168700 163170 150790 143930 119180 200600 14664 249760 130350 130340 134980 168470 163950 148010 139440 1 1 1 1 1 1 1 1 1 1 1 25078000 10615000 14462000 19713 1507 18113 100460;100461 121612 121612 1 TVLVNADGEEVAMR Oxidation (M) 1518.7348 0.73480712 1505 Q03252 LMNB2 Lamin-B2 yes yes 0 0 1 0 By MS/MS 3 0 1 1 41.765 41.819 3 0.030206 12660 20211116_3430_TMUAki_TMT10x_P_F3 41.938 28.276 346320 525760 4527.6 658300 826140 667940 412610 332590 383750 305360 455940 322490 491080 39652 662360 782020 672330 439260 354270 394230 299360 437590 1 1 1 1 1 1 1 1 1 1 1 346320 525760 4527.6 658300 826140 667940 412610 332590 383750 305360 455940 322490 491080 39652 662360 782020 672330 439260 354270 394230 299360 437590 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 44465000 44465000 0 19714 1505 18114 100462 121613 121613 2045 1 TVLVNADGEEVAMR Unmodified 1502.7399 0.73989249 1505 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 49.425 49.068 2 5.469E-51 16774 20211116_3441_TMUAki_TMT10x_S_F3 287.29 248.33 1442000 2349200 0 2755300 1309500 777100 1048200 940760 864480 922250 1617200 1342400 2193600 83871 2752600 1246900 917360 1071200 947690 914210 901480 1536800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1442000 2349200 0 2755300 1309500 777100 1048200 940760 864480 922250 1617200 1342400 2193600 83871 2752600 1246900 917360 1071200 947690 914210 901480 1536800 1 1 0 1 1 1 1 1 1 1 1 146040000 0 146040000 19715 1505 18114 100463;100464 121614;121615 121615 2 TVLWNPEDLIPLPIPK Unmodified 1844.0448 0.044771933 3212 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 81.773 81.778 3 2.8325E-05 27123 20211116_3436_TMUAki_TMT10x_P_F8 87.932 69.52 1829300 2756600 8627.4 2930300 2054900 2326000 2057200 1271600 1254600 1549800 1879100 1703000 2572900 116410 2968100 1967900 2383200 2061700 1354400 1333600 1502200 1793300 2 2 1 2 2 2 2 2 2 2 2 1070700 1488100 0 1594000 1058100 1472400 1116300 711010 664280 829870 1097600 996520 1388900 42133 1616800 1013000 1490400 1115300 764890 710950 805590 1045400 1 1 0 1 1 1 1 1 1 1 1 758650 1268500 8627.4 1336300 996840 853600 940840 560600 590340 719970 781480 706440 1183900 74274 1351200 954940 892780 946420 589530 622690 696590 747950 1 1 1 1 1 1 1 1 1 1 1 422430000 281620000 140810000 19716 3212 18115 100465;100466 121616;121617 121616 2 TVMENFVAFVDK Oxidation (M) 1414.6803 0.68025235 38 CON__P02769 yes yes 0 0 1 0 By MS/MS By MS/MS 5.09 0.793 3 4 4 6 5 69.268 69.249 2;3 6.4925E-05 21547 20211116_3444_TMUAki_TMT10x_S_F5 97.299 78.028 + 18238000 28423000 40246 25348000 22043000 31061000 22636000 35762000 34508000 33240000 26494000 16981000 26510000 1508900 26162000 21147000 31396000 23297000 36048000 34302000 32568000 25806000 7 7 2 7 7 7 7 7 7 7 7 10317000 15525000 17532 13727000 12066000 22872000 14179000 20248000 19416000 18694000 14784000 9605400 14480000 837530 14267000 11620000 22677000 14434000 20673000 19358000 18322000 14405000 4 4 1 4 4 4 4 4 4 4 4 7921600 12898000 22714 11621000 9977000 8188900 8457600 15515000 15092000 14545000 11711000 7375700 12031000 671390 11895000 9527300 8718600 8863700 15375000 14944000 14246000 11401000 3 3 1 3 3 3 3 3 3 3 3 4317500000 2125600000 2191900000 19717 38 18116 100467;100468;100469;100470;100471;100472;100473;100474;100475;100476;100477 121618;121619;121620;121621;121622;121623;121624;121625;121626 121624 19 9 TVMENFVAFVDK Unmodified 1398.6853 0.68533773 38 CON__P02769 yes yes 0 0 0 0 By MS/MS 7 0.816 1 1 1 3 78.984 78.961 3 0.00055118 26007 20211116_3436_TMUAki_TMT10x_P_F8 78.763 48.596 + 3956600 6187400 66687 5718600 3481900 6435000 4834500 3014800 2842900 3486600 4377600 3684500 5771700 383530 5877700 3376700 6434500 4771400 3252000 3033800 3385700 4175400 1 1 1 1 1 1 1 1 1 1 1 3956600 6187400 66687 5718600 3481900 6435000 4834500 3014800 2842900 3486600 4377600 3684500 5771700 383530 5877700 3376700 6434500 4771400 3252000 3033800 3385700 4175400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 369220000 369220000 0 19718 38 18116 100478;100479;100480 121627;121628;121629 121629 3 TVMIGGK Unmodified 704.3891 0.38909613 620 P11216;P11217;P11217-2 PYGB;PYGM Glycogen phosphorylase, brain form;Glycogen phosphorylase, muscle form yes no 0 0 0 0 By MS/MS 7 0 1 1 38.537 39.196 2 0.081782 11437 20211116_3446_TMUAki_TMT10x_S_F7 61.561 37.205 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19719 620 18117 100481 121630 121630 1 TVNCLLVGAIAIPHCVLK Unmodified 1977.0904 0.090358692 1933 Q5SY16 NOL9 Polynucleotide 5'-hydroxyl-kinase NOL9 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 76.623 76.64 3 3.784E-08 25555 20211116_3433_TMUAki_TMT10x_P_F5 105.38 86.544 16756000 29445000 156350 25966000 21039000 25180000 21417000 18907000 17495000 18737000 21902000 15602000 27463000 1540500 26723000 20188000 25559000 21583000 19535000 18126000 18306000 20992000 5 5 4 5 5 5 5 5 5 5 5 7457500 12611000 11886 11570000 7302700 14082000 8793900 7551000 6908800 8070100 9065700 6943800 11764000 627190 11914000 7040400 14044000 8783700 8022500 7187500 7860300 8678600 2 2 2 2 2 2 2 2 2 2 2 9298600 16834000 144460 14396000 13736000 11098000 12623000 11356000 10587000 10667000 12836000 8658600 15699000 913290 14809000 13148000 11515000 12799000 11512000 10939000 10446000 12313000 3 3 2 3 3 3 3 3 3 3 3 1591700000 936390000 655300000 19720 1933 18118 100482;100483 121631;121632;121633;121634;121635 121631 5 TVNEDVEEMEIDEQTK Oxidation (M) 1923.8255 0.8255322 2929 Q9NRL2;Q9NRL2-2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 0 0 1 0 By MS/MS 1 0 1 1 46.881 46.881 3 4.6992E-05 12759 20211116_3428_TMUAki_TMT10x_P_F1 84.14 73.505 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19721 2929 18119 100484 121636 121636 3027 1 TVNELQNLSSAEVVVPR Unmodified 1853.9847 0.98469087 86 O00425;O00425-2 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 5.38 1 3 4 4 2 7 6 55.653 55.69 2;3 1.9867E-108 20057 20211116_3431_TMUAki_TMT10x_P_F4 370.65 305.25 42189000 72090000 731450 71141000 52932000 63709000 48916000 53026000 50392000 51078000 57065000 39285000 67264000 4020000 72531000 50677000 65120000 49873000 54394000 51437000 49966000 54842000 17 17 11 17 17 17 17 17 17 17 17 16994000 28919000 244220 27468000 23683000 37122000 23075000 21804000 21024000 20986000 22728000 15825000 26979000 1677100 28268000 22704000 36878000 23374000 22917000 21538000 20529000 21872000 7 7 4 7 7 7 7 7 7 7 7 25195000 43171000 487230 43673000 29249000 26586000 25841000 31222000 29368000 30093000 34337000 23460000 40285000 2342900 44263000 27972000 28243000 26499000 31477000 29899000 29436000 32970000 10 10 7 10 10 10 10 10 10 10 10 7683600000 3568600000 4115000000 19722 86 18120 100485;100486;100487;100488;100489;100490;100491;100492;100493;100494;100495;100496;100497 121637;121638;121639;121640;121641;121642;121643;121644;121645;121646;121647;121648;121649;121650;121651;121652;121653;121654 121637 18 TVNELQNLTAAEVVVPR Unmodified 1852.0054 0.005426314 3032 Q9NZI8;Q9NZI8-2 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.32 1.34 2 4 4 4 5 9 10 69.483 69.452 2;3 3.6078E-124 22537 20211116_3433_TMUAki_TMT10x_P_F5 380.66 337.14 129760000 216980000 998050 198840000 149240000 173240000 176690000 104240000 88887000 110010000 159200000 120820000 202400000 11294000 203750000 143820000 176510000 175070000 109640000 96765000 107210000 151400000 25 25 14 25 25 25 25 25 25 25 25 74398000 123780000 534310 114390000 80271000 118670000 98696000 60691000 51946000 62815000 91272000 69273000 115470000 6221600 117420000 77444000 119330000 97701000 64696000 56287000 61261000 86829000 14 14 7 14 14 14 14 14 14 14 14 55362000 93193000 463740 84451000 68973000 54565000 77997000 43553000 36941000 47198000 67931000 51550000 86926000 5072800 86325000 66380000 57183000 77373000 44947000 40477000 45946000 64572000 11 11 7 11 11 11 11 11 11 11 11 49678000000 26569000000 23109000000 19723 3032 18121 100498;100499;100500;100501;100502;100503;100504;100505;100506;100507;100508;100509;100510;100511;100512;100513;100514;100515;100516 121655;121656;121657;121658;121659;121660;121661;121662;121663;121664;121665;121666;121667;121668;121669;121670;121671;121672;121673;121674;121675;121676;121677;121678;121679;121680;121681;121682;121683 121663 29 TVNELQNLTSAEVIVPR Unmodified 1882.016 0.015991 3353 Q9Y6M1;Q9Y6M1-5;Q9Y6M1-6;Q9Y6M1-3;Q9Y6M1-4;Q9Y6M1-1 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 70.093 70.054 2;3 1.7774E-66 22890 20211116_3433_TMUAki_TMT10x_P_F5 264.87 220.33 17890000 29863000 37304 28122000 20850000 24052000 21039000 19607000 17976000 20781000 22796000 16657000 27859000 1509800 28751000 19996000 24654000 21236000 20195000 18592000 20247000 21842000 6 6 2 6 6 6 6 6 6 6 6 6013400 9321200 37304 8961700 6428900 10816000 7213700 6561200 5882700 6920500 6927500 5599400 8696400 539140 9195500 6186300 10809000 7234900 6896500 6079900 6744100 6650400 2 2 2 2 2 2 2 2 2 2 2 11876000 20542000 0 19161000 14421000 13236000 13825000 13046000 12093000 13860000 15869000 11058000 19162000 970620 19556000 13809000 13845000 14001000 13298000 12512000 13503000 15191000 4 4 0 4 4 4 4 4 4 4 4 946100000 318020000 628080000 19724 3353 18122 100517;100518;100519;100520 121684;121685;121686;121687;121688;121689;121690 121684 7 TVNTFSQSVSSLFGEDNVR Unmodified 2085.9967 0.99671212 2327 Q8WY22 BRI3BP BRI3-binding protein yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 76.329 76.38 3 8.5053E-18 26711 20211116_3446_TMUAki_TMT10x_S_F7 150.23 142.45 9187600 15218000 174900 11449000 10210000 25374000 12349000 29253000 13418000 19670000 15269000 8555800 14186000 931170 12154000 9854100 25078000 12447000 29260000 13669000 19605000 14673000 3 3 2 3 3 3 3 3 3 3 3 6644100 11002000 36012 8025100 7224700 21027000 9325800 20500000 9640300 13358000 10550000 6186500 10255000 584660 8591600 6981900 20607000 9359400 20655000 9825900 13341000 10149000 2 2 1 2 2 2 2 2 2 2 2 2543500 4215500 138890 3424100 2985700 4347700 3023300 8753700 3777500 6311500 4719400 2369300 3930500 346510 3562900 2872200 4471200 3088000 8604700 3843300 6264800 4523500 1 1 1 1 1 1 1 1 1 1 1 1567100000 861250000 705870000 19725 2327 18123 100521;100522;100523;100524 121691;121692;121693;121694 121694 4 TVNVVQFEPSK Unmodified 1246.6558 0.65575216 1001 P41250 GARS Glycine--tRNA ligase yes yes 0 0 0 0 By MS/MS By MS/MS 5.4 0.49 3 2 3 2 54.056 54.243 3 0.00030708 16354 20211116_3433_TMUAki_TMT10x_P_F5 82.543 51.315 1285300 2011300 3086.8 2268300 3437800 3501800 2195600 2192600 2161800 1815200 2012400 1196800 1877700 139580 2314300 3265300 3461900 2291000 2284000 2195500 1788400 1945900 1 1 1 1 1 1 1 1 1 1 1 1285300 2011300 3086.8 2268300 3437800 3501800 2195600 2192600 2161800 1815200 2012400 1196800 1877700 139580 2314300 3265300 3461900 2291000 2284000 2195500 1788400 1945900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 582820000 243950000 338870000 19726 1001 18124 100525;100526;100527;100528;100529 121695;121696;121697;121698 121695 4 TVPEAIK Acetyl (Protein N-term) 798.44872 0.4487195 3401 yes no 1 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 3 1 36.221 36.186 2 0.010416 8534 20211116_3428_TMUAki_TMT10x_P_F1 51.688 42.34 + 5401800 8565100 23165 9175500 10832000 10665000 7436500 6427500 6568700 5598900 7747000 5029400 7994500 491520 9339600 10299000 10678000 7693800 6724100 6762300 5502300 7436700 5 5 1 5 5 5 5 5 5 5 5 5217000 8259200 23165 8903900 10625000 10507000 7241100 6243400 6386100 5438200 7514900 4857300 7709100 481970 9061900 10101000 10509000 7495400 6538900 6574200 5344400 7214400 4 4 1 4 4 4 4 4 4 4 4 184830 305980 0 271550 207080 158100 195390 184100 182640 160670 232030 172040 285380 9559.3 277760 197870 168640 198410 185160 188120 157890 222300 1 1 0 1 1 1 1 1 1 1 1 290570000 283900000 6666900 19727 3401 18125 100530;100531;100532;100533 121699;121700 121699 2 TVPEELVKPEELSK Unmodified 1596.8611 0.86105349 3182 Q9UMS4 PRPF19 Pre-mRNA-processing factor 19 yes yes 0 0 0 1 By MS/MS By MS/MS 4.71 1.03 1 2 2 2 4 3 55.477 55.543 3 7.2383E-15 17088 20211116_3442_TMUAki_TMT10x_S_F4 159.13 135.96 94185000 155430000 1261100 201080000 156170000 160790000 98591000 146600000 163790000 127610000 146430000 87701000 145210000 9320300 201310000 148340000 165970000 105030000 149200000 163160000 125420000 141790000 13 13 9 13 13 13 13 13 13 13 13 44225000 70132000 478610 92641000 120410000 124730000 69271000 65317000 74983000 57343000 65288000 41177000 65525000 4648400 93399000 114160000 123760000 73115000 69170000 75688000 56332000 63281000 6 6 3 6 6 6 6 6 6 6 6 49960000 85302000 782520 108440000 35760000 36055000 29321000 81284000 88804000 70270000 81142000 46523000 79682000 4671900 107910000 34174000 42212000 31920000 80031000 87468000 69083000 78512000 7 7 6 7 7 7 7 7 7 7 7 11881000000 7090600000 4790100000 19728 3182 18126 100534;100535;100536;100537;100538;100539;100540 121701;121702;121703;121704;121705;121706;121707;121708;121709;121710;121711;121712;121713 121707 13 TVPEGDWFCPECRPK Unmodified 1876.8236 0.8236389 2929 Q9NRL2;Q9NRL2-2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 0 0 0 1 By MS/MS 5 0 1 1 53.403 53.603 3 0.0001452 16104 20211116_3433_TMUAki_TMT10x_P_F5 80.706 64.764 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19729 2929 18127 100541 121714 121714 1 TVPFCSTFAAFFTR Unmodified 1650.7864 0.78644876 853 P29401;P29401-2 TKT Transketolase yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 79.823 79.844 2 3.9211E-29 26028 20211116_3445_TMUAki_TMT10x_S_F6 200.93 163.37 23477000 39352000 0 36770000 27422000 25578000 25744000 19185000 15330000 20559000 26129000 21856000 36710000 1632900 37527000 26228000 26604000 25879000 19870000 16434000 20023000 24872000 3 3 0 3 3 3 3 3 3 3 3 6625400 11038000 0 10900000 6475900 9523600 7026500 5258200 4711400 5398000 7205900 6168500 10299000 491750 11109000 6219600 9691100 7026800 5565600 4982900 5266200 6874100 1 1 0 1 1 1 1 1 1 1 1 16851000 28315000 0 25870000 20946000 16055000 18718000 13927000 10618000 15161000 18923000 15688000 26412000 1141100 26418000 20008000 16913000 18852000 14304000 11451000 14756000 17998000 2 2 0 2 2 2 2 2 2 2 2 3850300000 1289100000 2561200000 19730 853 18128 100542;100543;100544;100545 121715;121716;121717;121718 121717 4 TVPFLPLLGGCIDDTILSR Unmodified 2086.1133 0.1132622 2096 Q7Z7H8;Q7Z7H8-2 MRPL10 39S ribosomal protein L10, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 3.67 2.87 2 4 1 2 5 4 81.857 81.854 2;3 2.0671E-63 27229 20211116_3440_TMUAki_TMT10x_S_F2 267.11 236.56 7877500 12464000 294810 11479000 8947400 10834000 9201600 6810100 6332700 7120200 9546700 7336600 11626000 897470 11771000 8600500 10986000 9231500 7136400 6682000 6941200 9109900 8 8 6 8 8 8 8 8 8 8 8 3749800 5472000 90778 5432100 3488500 6357600 3969200 3521700 3396100 3737200 4588900 3491900 5105800 369620 5558300 3361100 6355900 3983200 3730200 3522300 3641100 4389900 4 4 3 4 4 4 4 4 4 4 4 4127700 6991800 204030 6047300 5459000 4476400 5232400 3288400 2936700 3383000 4957800 3844600 6520600 527840 6212400 5239500 4630400 5248300 3406200 3159700 3300100 4720000 4 4 3 4 4 4 4 4 4 4 4 3106200000 1501400000 1604800000 19731 2096 18129 100546;100547;100548;100549;100550;100551;100552;100553;100554 121719;121720;121721;121722;121723;121724;121725;121726;121727 121726 9 TVPLAGHVGFDSLPDQLVNK Unmodified 2106.111 0.11095402 1681 Q14141;Q14141-2;Q14141-4;Q14141-3 SEPT6 Septin-6 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 68.82 69.008 3 4.1523E-14 23171 20211116_3435_TMUAki_TMT10x_P_F7 140.16 125.89 31662000 56302000 561360 52087000 36981000 53517000 38265000 33624000 32751000 35634000 40997000 29485000 52520000 3201300 53456000 35524000 53984000 38576000 35251000 33852000 34719000 39293000 8 8 7 8 8 8 8 8 8 8 8 19171000 32979000 335910 29890000 19429000 38900000 22577000 20579000 19039000 21046000 24243000 17852000 30761000 1884700 30846000 18728000 38661000 22627000 21862000 19708000 20536000 23225000 5 5 4 5 5 5 5 5 5 5 5 12491000 23324000 225450 22197000 17551000 14617000 15688000 13045000 13712000 14588000 16754000 11632000 21759000 1316600 22611000 16796000 15323000 15949000 13389000 14144000 14184000 16068000 3 3 3 3 3 3 3 3 3 3 3 4866900000 2473600000 2393400000 19732 1681 18130 100555;100556;100557;100558 121728;121729;121730;121731;121732;121733;121734;121735 121728 8 TVPLYESPR Unmodified 1060.5553 0.55530983 1847 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 39.921 40.03 2 3.0682E-05 10849 20211116_3433_TMUAki_TMT10x_P_F5 108.74 73.918 7249900 11934000 55539 13797000 17902000 12523000 9398100 14569000 15651000 10173000 12311000 6750500 11142000 764490 13925000 16952000 12882000 10171000 14577000 15530000 10116000 11979000 6 6 4 6 6 6 6 6 6 6 6 4087400 6893600 7005.4 7462900 15037000 10161000 6719300 8458100 8400000 5426700 6657000 3805500 6434600 461240 7613500 14207000 10146000 7302600 8594800 8410100 5424900 6475700 3 3 1 3 3 3 3 3 3 3 3 3162400 5040000 48534 6334100 2864800 2362700 2678800 6110400 7250700 4746100 5653900 2944900 4707700 303250 6311000 2745100 2736100 2868500 5982600 7119700 4691500 5503500 3 3 3 3 3 3 3 3 3 3 3 665710000 394280000 271430000 19733 1847 18131 100559;100560;100561;100562;100563 121736;121737;121738;121739;121740;121741;121742 121739 7 TVPPAVTGITFLSGGQSEEEASINLNAINK Unmodified 3056.5666 0.56660939 482 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 By MS/MS By MS/MS 6.56 1.15 1 6 21 37 49 35 78 71 88.862 88.835 3;4 2.739E-69 30013 20211116_3446_TMUAki_TMT10x_S_F7 227.66 213.65 113540000 181440000 1493500 176110000 113330000 162690000 133220000 91230000 91401000 103250000 126140000 105730000 169280000 9156900 179830000 109230000 164960000 132800000 96723000 96047000 100340000 120610000 200 200 98 200 199 200 200 200 199 199 200 66157000 100370000 919310 98512000 56435000 107520000 70957000 53195000 51526000 61424000 73578000 61603000 93651000 5572100 100760000 54517000 107760000 70613000 57073000 54051000 59651000 70295000 115 115 59 115 114 115 115 115 114 114 115 47386000 81067000 574200 77593000 56898000 55174000 62263000 38035000 39875000 41823000 52562000 44124000 75631000 3584800 79068000 54714000 57206000 62182000 39650000 41996000 40691000 50312000 85 85 39 85 85 85 85 85 85 85 85 42259000000 17077000000 25182000000 19734 482 18132 100564;100565;100566;100567;100568;100569;100570;100571;100572;100573;100574;100575;100576;100577;100578;100579;100580;100581;100582;100583;100584;100585;100586;100587;100588;100589;100590;100591;100592;100593;100594;100595;100596;100597;100598;100599;100600;100601;100602;100603;100604;100605;100606;100607;100608;100609;100610;100611;100612;100613;100614;100615;100616;100617;100618;100619;100620;100621;100622;100623;100624;100625;100626;100627;100628;100629;100630;100631;100632;100633;100634;100635;100636;100637;100638;100639;100640;100641;100642;100643;100644;100645;100646;100647;100648;100649;100650;100651;100652;100653;100654;100655;100656;100657;100658;100659;100660;100661;100662;100663;100664;100665;100666;100667;100668;100669;100670;100671;100672;100673;100674;100675;100676;100677;100678;100679;100680;100681;100682;100683;100684;100685;100686;100687;100688;100689;100690;100691;100692;100693;100694;100695;100696;100697;100698;100699;100700;100701;100702;100703;100704;100705;100706;100707;100708;100709;100710;100711;100712 121743;121744;121745;121746;121747;121748;121749;121750;121751;121752;121753;121754;121755;121756;121757;121758;121759;121760;121761;121762;121763;121764;121765;121766;121767;121768;121769;121770;121771;121772;121773;121774;121775;121776;121777;121778;121779;121780;121781;121782;121783;121784;121785;121786;121787;121788;121789;121790;121791;121792;121793;121794;121795;121796;121797;121798;121799;121800;121801;121802;121803;121804;121805;121806;121807;121808;121809;121810;121811;121812;121813;121814;121815;121816;121817;121818;121819;121820;121821;121822;121823;121824;121825;121826;121827;121828;121829;121830;121831;121832;121833;121834;121835;121836;121837;121838;121839;121840;121841;121842;121843;121844;121845;121846;121847;121848;121849;121850;121851;121852;121853;121854;121855;121856;121857;121858;121859;121860;121861;121862;121863;121864;121865;121866;121867;121868;121869;121870;121871;121872;121873;121874;121875;121876;121877;121878;121879;121880;121881;121882;121883;121884;121885;121886;121887;121888;121889;121890;121891;121892;121893;121894;121895;121896;121897;121898;121899;121900;121901;121902;121903;121904;121905;121906;121907;121908;121909;121910;121911;121912;121913;121914;121915;121916;121917;121918;121919;121920;121921;121922;121923;121924;121925;121926;121927;121928;121929;121930;121931;121932;121933;121934;121935;121936;121937;121938;121939;121940;121941;121942 121911 200 TVPQSSLTMGQLYEK Oxidation (M) 1696.8342 0.83418681 1274 P60520 GABARAPL2 Gamma-aminobutyric acid receptor-associated protein-like 2 yes yes 0 0 1 0 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 51.003 51.3 3 0.00048465 13891 20211116_3434_TMUAki_TMT10x_P_F6 74.783 49.848 10948000 19194000 25054 18331000 17367000 19176000 12702000 15013000 12295000 14277000 16639000 10193000 17907000 1012900 18774000 16536000 19390000 13115000 15452000 12680000 13974000 15916000 3 3 2 3 3 3 3 3 3 3 3 5852800 9691500 25054 10302000 11643000 14207000 8657300 6664700 6026100 6340400 8004900 5449700 9045500 589680 10525000 11090000 14063000 8856100 7147200 6315900 6205700 7660700 2 2 2 2 2 2 2 2 2 2 2 5094800 9502600 0 8029100 5723800 4968400 4044500 8348500 6268800 7936400 8633900 4743700 8861400 423210 8249400 5445500 5326300 4259200 8305300 6364000 7768000 8255600 1 1 0 1 1 1 1 1 1 1 1 1895300000 486490000 1408800000 19735 1274 18133 100713;100714 121943;121944;121945 121944 1714 3 TVPQSSLTMGQLYEK Unmodified 1680.8393 0.83927219 1274 P60520 GABARAPL2 Gamma-aminobutyric acid receptor-associated protein-like 2 yes yes 0 0 0 0 By MS/MS 7 0 1 1 58.741 59.256 3 0.0003131 19650 20211116_3446_TMUAki_TMT10x_S_F7 78.228 58.389 3899900 7410500 8386.1 6884300 3570300 3334000 3446000 4452000 4003000 4010100 4745500 3631200 6912800 326530 7007200 3420800 3640500 3519100 4456800 4074400 3934700 4554800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3899900 7410500 8386.1 6884300 3570300 3334000 3446000 4452000 4003000 4010100 4745500 3631200 6912800 326530 7007200 3420800 3640500 3519100 4456800 4074400 3934700 4554800 1 1 1 1 1 1 1 1 1 1 1 366510000 0 366510000 19736 1274 18133 100715 121946 121946 1 TVPVEAVTSK Unmodified 1029.5706 0.57062555 1699 Q14247;Q14247-3;Q14247-2 CTTN Src substrate cortactin yes no 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 2 2 43.335 43.445 2 1.1752E-08 12055 20211116_3433_TMUAki_TMT10x_P_F5 132.78 95.937 1723400 2915500 52320 3199900 1896300 1570000 1923700 1955600 2108000 1823700 2461700 1605000 2721600 194060 3219900 1822100 1708600 1955500 1964900 2149000 1786600 2363700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1723400 2915500 52320 3199900 1896300 1570000 1923700 1955600 2108000 1823700 2461700 1605000 2721600 194060 3219900 1822100 1708600 1955500 1964900 2149000 1786600 2363700 1 1 1 1 1 1 1 1 1 1 1 123940000 70868000 53071000 19737 1699 18134 100716;100717;100718;100719 121947;121948;121949 121947 3 TVPVFESVEAAVLLPEEPVSQLGVK Unmodified 2636.4313 0.4312851 1563 Q12788 TBL3 Transducin beta-like protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 5 2 1 1 1 1 81.233 81.219 3 4.4045E-13 28715 20211116_3430_TMUAki_TMT10x_P_F3 112.45 100.8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19738 1563 18135 100720;100721 121950;121951 121950 2 TVQDALESLVAR Unmodified 1300.6987 0.69867961 1729 Q14694;Q14694-3;Q14694-2 USP10 Ubiquitin carboxyl-terminal hydrolase 10 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 75.566 75.54 2 4.7913E-15 24264 20211116_3445_TMUAki_TMT10x_S_F6 187.31 141.71 27349000 43867000 182790 41933000 27792000 35169000 28752000 22448000 21373000 22699000 29297000 25466000 40925000 2375900 42814000 26679000 35959000 28886000 23473000 22348000 22159000 28017000 7 7 5 7 7 7 7 7 7 7 7 15412000 23718000 174920 22685000 14483000 23788000 16301000 12722000 12108000 12724000 16599000 14351000 22127000 1427700 23231000 13943000 23917000 16310000 13494000 12661000 12427000 15873000 4 4 4 4 4 4 4 4 4 4 4 11938000 20149000 7875.8 19249000 13309000 11380000 12451000 9725700 9265000 9975300 12698000 11115000 18798000 948110 19583000 12736000 12042000 12576000 9979400 9686800 9732100 12143000 3 3 1 3 3 3 3 3 3 3 3 2441200000 1441100000 1000100000 19739 1729 18136 100722;100723;100724;100725;100726;100727 121952;121953;121954;121955;121956;121957;121958;121959 121958 8 TVQDLTSVVQTLLQQMQDK Oxidation (M) 2190.1202 0.12019808 341 O75506 HSBP1 Heat shock factor-binding protein 1 yes yes 0 0 1 0 By MS/MS 2 0 1 1 81.858 81.857 3 0.00013994 28505 20211116_3429_TMUAki_TMT10x_P_F2 67.396 51.274 1153200 1520000 17860 1660500 887390 1354100 834460 666820 714430 728920 1121700 1073900 1418900 108530 1679500 850620 1382900 845480 714520 746510 709340 1069500 1 1 1 1 1 1 1 1 1 1 1 1153200 1520000 17860 1660500 887390 1354100 834460 666820 714430 728920 1121700 1073900 1418900 108530 1679500 850620 1382900 845480 714520 746510 709340 1069500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 194760000 194760000 0 19740 341 18137 100728 121960 121960 247 1 TVQGPPTSDDIFER Unmodified 1560.742 0.74200098 484 P04181 OAT Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form yes yes 0 0 0 0 By MS/MS 3 0 1 1 51.299 50.937 2 2.5314E-29 17542 20211116_3441_TMUAki_TMT10x_S_F3 207.25 172.02 1625700 2737400 25233 3512300 1058000 1086300 938950 1844900 1967500 1553700 2377300 1513900 2557100 150350 3492200 1013000 1273300 990490 1828700 1971100 1529400 2280600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1625700 2737400 25233 3512300 1058000 1086300 938950 1844900 1967500 1553700 2377300 1513900 2557100 150350 3492200 1013000 1273300 990490 1828700 1971100 1529400 2280600 1 1 1 1 1 1 1 1 1 1 1 170150000 0 170150000 19741 484 18138 100729 121961 121961 1 TVQIEASTVEIEER Unmodified 1602.8101 0.81008055 1752 Q15019;Q15019-2;Q15019-3 SEPT2 Septin-2 yes no 0 0 0 0 By MS/MS By MS/MS 1.91 0.793 4 4 3 6 5 51.555 51.371 2;3 6.9033E-72 16143 20211116_3429_TMUAki_TMT10x_P_F2 327.66 241.93 25427000 42264000 242440 42089000 34445000 44016000 28866000 36158000 33955000 32887000 36418000 23676000 39436000 2361200 42979000 32896000 44546000 29729000 37061000 34408000 32254000 35055000 13 13 7 13 13 13 13 13 13 13 13 15894000 25283000 114630 25947000 25021000 34646000 20444000 20511000 19071000 18929000 21371000 14799000 23595000 1478200 26553000 23878000 34441000 20934000 21520000 19543000 18552000 20545000 7 7 3 7 7 7 7 7 7 7 7 9533400 16981000 127810 16142000 9424800 9370200 8421500 15647000 14884000 13958000 15047000 8877300 15842000 883030 16426000 9017900 10105000 8794800 15542000 14865000 13702000 14510000 6 6 4 6 6 6 6 6 6 6 6 5387300000 3449300000 1938000000 19742 1752 18139 100730;100731;100732;100733;100734;100735;100736;100737;100738;100739;100740 121962;121963;121964;121965;121966;121967;121968;121969;121970;121971;121972;121973;121974 121966 13 TVQIPVYDFVSHSR Unmodified 1646.8417 0.84165545 2743 Q9BZX2 UCK2 Uridine-cytidine kinase 2 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 60.304 60.306 3 1.8808E-10 18330 20211116_3436_TMUAki_TMT10x_P_F8 123.29 89.112 2039300 3809800 3394.8 3143900 2489100 2657000 2195400 4532200 4088900 3849800 3533400 1898800 3552500 178540 3247000 2379500 2779000 2300900 4493000 4057100 3788000 3425700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2039300 3809800 3394.8 3143900 2489100 2657000 2195400 4532200 4088900 3849800 3533400 1898800 3552500 178540 3247000 2379500 2779000 2300900 4493000 4057100 3788000 3425700 1 1 1 1 1 1 1 1 1 1 1 464440000 0 464440000 19743 2743 18140 100741;100742 121975;121976 121975 2 TVQQHAGETDPVTTMR Oxidation (M) 1785.8316 0.83156105 1863 Q16775;Q16775-2 HAGH Hydroxyacylglutathione hydrolase, mitochondrial yes no 0 0 1 0 By MS/MS 3 0 1 1 28.423 28.149 3 0.0075441 8341 20211116_3441_TMUAki_TMT10x_S_F3 56.851 42.06 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19744 1863 18141 100743 121977 121977 2478 1 TVQTAAANAASTAASSAAQNAFK Unmodified 2151.0556 0.055623984 165 O15126 SCAMP1 Secretory carrier-associated membrane protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 61.772 61.573 3 5.6583E-28 20775 20211116_3439_TMUAki_TMT10x_S_F1 168.68 152.37 32337000 54122000 1177200 54872000 39685000 47924000 38692000 32760000 32445000 33553000 41788000 30118000 50504000 3881000 55822000 38098000 48909000 39106000 34097000 33612000 32737000 40022000 7 7 7 7 7 7 7 7 7 7 7 14285000 23532000 505130 24133000 18216000 28371000 19692000 14338000 14769000 14722000 17848000 13304000 21960000 1710100 24641000 17534000 28326000 19745000 15298000 15350000 14362000 17122000 3 3 3 3 3 3 3 3 3 3 3 18053000 30590000 672060 30739000 21469000 19552000 19000000 18421000 17676000 18832000 23940000 16814000 28544000 2170900 31181000 20564000 20583000 19360000 18799000 18262000 18375000 22900000 4 4 4 4 4 4 4 4 4 4 4 5006800000 2705200000 2301600000 19745 165 18142 100744;100745;100746;100747 121978;121979;121980;121981;121982;121983;121984 121981 7 TVSGVNGPLVILDHVK Unmodified 1646.9356 0.93555583 753 P21281 ATP6V1B2 V-type proton ATPase subunit B, brain isoform yes yes 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 64.792 64.981 3 1.0483E-10 19678 20211116_3447_TMUAki_TMT10x_S_F8 128.48 98.675 13770000 23926000 297640 25136000 14754000 14025000 14391000 18635000 18822000 19257000 20022000 12823000 22330000 1432800 25391000 14156000 15077000 14753000 18733000 18997000 18782000 19277000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13770000 23926000 297640 25136000 14754000 14025000 14391000 18635000 18822000 19257000 20022000 12823000 22330000 1432800 25391000 14156000 15077000 14753000 18733000 18997000 18782000 19277000 3 3 3 3 3 3 3 3 3 3 3 2057400000 0 2057400000 19746 753 18143 100748;100749 121985;121986;121987 121986 3 TVSKVDDFLANEAK Unmodified 1535.7831 0.78313752 1170 P52209;P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 1 By MS/MS By MS/MS 5.22 1.31 1 2 2 2 2 5 4 56.804 57.03 3 7.8048E-20 17784 20211116_3442_TMUAki_TMT10x_S_F4 178.14 124.81 90646000 157130000 897130 180020000 157400000 162260000 100920000 164790000 175120000 140890000 146800000 84404000 146710000 8914400 181770000 149540000 166450000 107610000 166700000 173900000 138580000 142490000 11 11 7 11 11 11 11 11 11 11 11 45564000 76754000 338730 88304000 121450000 129220000 76772000 78812000 84093000 67829000 71753000 42426000 71662000 5022900 89880000 115340000 127990000 80436000 82346000 84792000 66698000 69600000 7 7 4 7 7 7 7 7 7 7 7 45083000 80381000 558400 91721000 35949000 33037000 24144000 85976000 91026000 73058000 75052000 41979000 75046000 3891500 91892000 34191000 38465000 27178000 84356000 89110000 71884000 72894000 4 4 3 4 4 4 4 4 4 4 4 13964000000 7190100000 6774200000 19747 1170 18144 100750;100751;100752;100753;100754;100755;100756;100757;100758 121988;121989;121990;121991;121992;121993;121994;121995;121996;121997;121998;121999 121996 12 TVSLGAGAK Unmodified 802.45487 0.45486751 524 P06748;P06748-3;P06748-2 NPM1 Nucleophosmin yes no 0 0 0 0 By MS/MS By MS/MS 6.8 1.17 1 1 1 2 4 1 35.407 35.723 2 0.00017369 9447 20211116_3435_TMUAki_TMT10x_P_F7 136.27 56.329 1230500 2038300 19682 2187600 1642900 2075000 1521700 874820 1178400 979160 1542300 1145900 1902500 126140 2219500 1573400 2093900 1539200 953150 1226800 952000 1476500 4 4 4 4 4 4 4 4 4 4 4 1140700 1851200 16080 1988700 1559900 1976400 1408200 796230 1073600 899610 1399000 1062200 1727900 115430 2018900 1492800 1987600 1426000 872200 1118400 874350 1339500 3 3 3 3 3 3 3 3 3 3 3 89835 187120 3602.5 198960 83034 98642 113490 78589 104870 79545 143290 83672 174640 10710 200630 80601 106230 113260 80945 108430 77649 137040 1 1 1 1 1 1 1 1 1 1 1 81362000 69730000 11632000 19748 524 18145 100759;100760;100761;100762;100763 122000;122001;122002;122003;122004 122002 5 TVSLGAGAKDELHIVEAEAMNYEGSPIK Oxidation (M) 2944.4488 0.44880244 524 P06748;P06748-3;P06748-2 NPM1 Nucleophosmin yes no 0 0 1 1 By MS/MS By MS/MS 3.99 1.5 4 9 23 31 12 10 4 2 53 42 82.403 82.367 3;4;5;6 1.1662E-52 25631 20211116_3430_TMUAki_TMT10x_P_F3 214.16 201.23 714360000 1254200000 8932300 1021500000 829630000 1394300000 923480000 980650000 1067500000 1024800000 970610000 665170000 1169500000 57627000 1064100000 798050000 1388200000 936280000 1019000000 1076200000 999020000 939310000 190 190 98 190 190 190 190 189 189 189 190 384670000 655260000 5594300 535040000 354920000 887330000 450870000 506460000 551250000 532530000 495770000 358180000 610970000 31446000 559580000 342820000 873660000 455430000 534930000 554440000 519020000 479970000 116 116 59 116 116 116 116 116 116 116 116 329690000 598980000 3338000 486490000 474710000 507000000 472610000 474190000 516200000 492240000 474840000 306990000 558490000 26181000 504550000 455230000 514500000 480850000 484080000 521760000 480000000 459340000 74 74 39 74 74 74 74 73 73 73 74 315180000000 163000000000 152180000000 19749 524 18146 100764;100765;100766;100767;100768;100769;100770;100771;100772;100773;100774;100775;100776;100777;100778;100779;100780;100781;100782;100783;100784;100785;100786;100787;100788;100789;100790;100791;100792;100793;100794;100795;100796;100797;100798;100799;100800;100801;100802;100803;100804;100805;100806;100807;100808;100809;100810;100811;100812;100813;100814;100815;100816;100817;100818;100819;100820;100821;100822;100823;100824;100825;100826;100827;100828;100829;100830;100831;100832;100833;100834;100835;100836;100837;100838;100839;100840;100841;100842;100843;100844;100845;100846;100847;100848;100849;100850;100851;100852;100853;100854;100855;100856;100857;100858 122005;122006;122007;122008;122009;122010;122011;122012;122013;122014;122015;122016;122017;122018;122019;122020;122021;122022;122023;122024;122025;122026;122027;122028;122029;122030;122031;122032;122033;122034;122035;122036;122037;122038;122039;122040;122041;122042;122043;122044;122045;122046;122047;122048;122049;122050;122051;122052;122053;122054;122055;122056;122057;122058;122059;122060;122061;122062;122063;122064;122065;122066;122067;122068;122069;122070;122071;122072;122073;122074;122075;122076;122077;122078;122079;122080;122081;122082;122083;122084;122085;122086;122087;122088;122089;122090;122091;122092;122093;122094;122095;122096;122097;122098;122099;122100;122101;122102;122103;122104;122105;122106;122107;122108;122109;122110;122111;122112;122113;122114;122115;122116;122117;122118;122119;122120;122121;122122;122123;122124;122125;122126;122127;122128;122129;122130;122131;122132;122133;122134;122135;122136;122137;122138;122139;122140;122141;122142;122143;122144;122145;122146;122147;122148;122149;122150;122151;122152;122153;122154;122155;122156;122157;122158;122159;122160;122161;122162;122163;122164;122165;122166;122167;122168;122169;122170;122171;122172;122173;122174;122175;122176;122177;122178;122179;122180;122181;122182;122183;122184;122185;122186;122187;122188;122189;122190;122191;122192;122193;122194 122024 438 190 TVSLGAGAKDELHIVEAEAMNYEGSPIK Unmodified 2928.4539 0.45388781 524 P06748;P06748-3;P06748-2 NPM1 Nucleophosmin yes no 0 0 0 1 By MS/MS By MS/MS 4.22 1.64 2 9 13 18 10 11 4 2 31 38 84.186 84.158 3;4;5;6 1.5455E-77 25664 20211116_3442_TMUAki_TMT10x_S_F4 245.49 226.61 740360000 1245500000 12047000 1259600000 807420000 749470000 914360000 265610000 204640000 356330000 728980000 689400000 1162300000 67483000 1276400000 777260000 784100000 899920000 297190000 257840000 344270000 686990000 102 102 47 102 102 102 102 102 102 102 102 347040000 572390000 2766900 563280000 317400000 422110000 414780000 117760000 87555000 160790000 320140000 323130000 534070000 27714000 573170000 306740000 431890000 405510000 136370000 111640000 155270000 301630000 46 46 16 46 46 46 46 46 46 46 46 393320000 673140000 9280200 696370000 490020000 327350000 499590000 147850000 117080000 195540000 408830000 366270000 628200000 39769000 703250000 470510000 352220000 494410000 160810000 146200000 189010000 385360000 56 56 31 56 56 56 56 56 56 56 56 243880000000 123330000000 120560000000 19750 524 18146 100859;100860;100861;100862;100863;100864;100865;100866;100867;100868;100869;100870;100871;100872;100873;100874;100875;100876;100877;100878;100879;100880;100881;100882;100883;100884;100885;100886;100887;100888;100889;100890;100891;100892;100893;100894;100895;100896;100897;100898;100899;100900;100901;100902;100903;100904;100905;100906;100907;100908;100909;100910;100911;100912;100913;100914;100915;100916;100917;100918;100919;100920;100921;100922;100923;100924;100925;100926;100927 122195;122196;122197;122198;122199;122200;122201;122202;122203;122204;122205;122206;122207;122208;122209;122210;122211;122212;122213;122214;122215;122216;122217;122218;122219;122220;122221;122222;122223;122224;122225;122226;122227;122228;122229;122230;122231;122232;122233;122234;122235;122236;122237;122238;122239;122240;122241;122242;122243;122244;122245;122246;122247;122248;122249;122250;122251;122252;122253;122254;122255;122256;122257;122258;122259;122260;122261;122262;122263;122264;122265;122266;122267;122268;122269;122270;122271;122272;122273;122274;122275;122276;122277;122278;122279;122280;122281;122282;122283;122284;122285;122286;122287;122288;122289;122290;122291;122292;122293;122294;122295;122296 122254 102 TVSLLDENNVSSYLSK Unmodified 1767.8891 0.88905915 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 6.43 0.495 4 3 3 4 72.779 72.862 2;3 6.0265E-157 23209 20211116_3445_TMUAki_TMT10x_S_F6 392.99 343.54 60028000 101980000 557150 96792000 78722000 86939000 76523000 68061000 67889000 74836000 79641000 55894000 95142000 5525300 98963000 75446000 88751000 77469000 70355000 69861000 72809000 76463000 8 8 5 8 8 8 8 8 8 8 8 18202000 29602000 100760 29349000 21367000 37173000 22811000 19763000 20576000 21614000 22812000 16947000 27620000 1458200 30076000 20518000 36995000 22993000 21027000 21110000 21033000 21937000 3 3 1 3 3 3 3 3 3 3 3 41826000 72382000 456380 67443000 57356000 49767000 53712000 48298000 47313000 53221000 56829000 38947000 67522000 4067100 68887000 54929000 51756000 54475000 49327000 48750000 51776000 54526000 5 5 4 5 5 5 5 5 5 5 5 5306400000 2134300000 3172100000 19751 1433 18147 100928;100929;100930;100931;100932;100933;100934 122297;122298;122299;122300;122301;122302;122303;122304;122305 122301 9 TVSPDRLELEAAQK Unmodified 1555.8206 0.82058566 1739 Q14974 KPNB1 Importin subunit beta-1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 1.12 2 2 2 2 4 4 45.85 45.918 3 8.2438E-25 12667 20211116_3431_TMUAki_TMT10x_P_F4 198.74 173.72 39682000 59748000 524910 77996000 86125000 74199000 46992000 64206000 71687000 54189000 62140000 36951000 55819000 4392600 78223000 81626000 75599000 50477000 65484000 71510000 53336000 60239000 11 11 10 11 11 11 11 11 11 11 11 23327000 34528000 369940 44866000 72929000 62815000 34893000 37441000 42643000 31460000 35980000 21722000 32257000 2936500 45309000 68992000 62314000 37622000 39169000 42807000 30972000 34915000 6 6 5 6 6 6 6 6 6 6 6 16355000 25219000 154970 33130000 13195000 11384000 12099000 26765000 29044000 22728000 26159000 15229000 23562000 1456100 32914000 12634000 13285000 12855000 26316000 28703000 22364000 25324000 5 5 5 5 5 5 5 5 5 5 5 7628200000 4789300000 2838900000 19752 1739 18148 100935;100936;100937;100938;100939;100940;100941;100942 122306;122307;122308;122309;122310;122311;122312;122313;122314;122315;122316 122307 11 TVSQIISLQTLK Unmodified 1329.7868 0.78676633 377 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 70.472 70.058 3 6.2299E-13 25317 20211116_3441_TMUAki_TMT10x_S_F3 143.42 121.87 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19753 377 18149 100943 122317 122317 1 TVSQIISLQTLKK Unmodified 1457.8817 0.88172935 377 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 62.313 62.3 3 2.7966E-26 18526 20211116_3444_TMUAki_TMT10x_S_F5 236.4 189.1 61026000 102450000 739770 107720000 97225000 106340000 70028000 88740000 80807000 78106000 84261000 56826000 95620000 6181300 109500000 92580000 108020000 72789000 90795000 81858000 76720000 81176000 8 8 7 8 8 8 8 8 8 8 8 33825000 55067000 548630 58586000 67564000 82558000 46594000 48444000 44332000 42805000 45865000 31498000 51397000 3788100 59878000 64290000 81859000 48288000 50808000 45253000 42038000 44197000 4 4 4 4 4 4 4 4 4 4 4 27201000 47386000 191140 49130000 29661000 23782000 23435000 40296000 36476000 35300000 38395000 25328000 44223000 2393200 49619000 28290000 26163000 24500000 39987000 36605000 34682000 36979000 4 4 3 4 4 4 4 4 4 4 4 4294500000 2593800000 1700700000 19754 377 18150 100944;100945;100946;100947;100948;100949 122318;122319;122320;122321;122322;122323;122324;122325;122326 122325 9 TVSYLGLE Unmodified 880.4542 0.45419881 76 O00244 ATOX1 Copper transport protein ATOX1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 65.537 65.371 2 0.017135 21170 20211116_3442_TMUAki_TMT10x_S_F4 71.141 59.773 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19755 76 18151 100950 122327 122327 1 TVTAMDVVYALK Oxidation (M) 1325.6901 0.69008876 1366 P62805 HIST1H4A Histone H4 yes yes 0 0 1 0 By MS/MS By MS/MS 6.14 2.01 8 4 2 9 8 16 43 31 78 43 52.412 52.457 2;3 2.2644E-11 23361 20211116_3439_TMUAki_TMT10x_S_F1 163.38 106.34 1107700000 1753400000 9080300 1917600000 1075700000 1714100000 1086700000 1396900000 1761400000 1525100000 1412200000 1031400000 1636700000 74583000 1941600000 1031000000 1750900000 1122500000 1440200000 1749600000 1484200000 1373100000 116 116 61 116 115 115 115 115 115 115 116 564790000 856250000 5056000 973130000 651880000 1137900000 563380000 659540000 850080000 744060000 688400000 525850000 799410000 44599000 986960000 622600000 1138300000 584900000 697250000 846530000 723210000 669080000 73 73 42 73 73 73 72 73 73 73 73 542960000 897110000 4024300 944420000 423790000 576180000 523270000 737400000 911320000 781070000 723830000 505530000 837270000 29984000 954620000 408390000 612600000 537580000 742910000 903070000 761030000 704040000 43 43 19 43 42 42 43 42 42 42 43 322610000000 178870000000 143740000000 19756 1366 18152 100951;100952;100953;100954;100955;100956;100957;100958;100959;100960;100961;100962;100963;100964;100965;100966;100967;100968;100969;100970;100971;100972;100973;100974;100975;100976;100977;100978;100979;100980;100981;100982;100983;100984;100985;100986;100987;100988;100989;100990;100991;100992;100993;100994;100995;100996;100997;100998;100999;101000;101001;101002;101003;101004;101005;101006;101007;101008;101009;101010;101011;101012;101013;101014;101015;101016;101017;101018;101019;101020;101021;101022;101023;101024;101025;101026;101027;101028;101029;101030;101031;101032;101033;101034;101035;101036;101037;101038;101039;101040;101041;101042;101043;101044;101045;101046;101047;101048;101049;101050;101051;101052;101053;101054;101055;101056;101057;101058;101059;101060;101061;101062;101063;101064;101065;101066;101067;101068;101069;101070;101071 122328;122329;122330;122331;122332;122333;122334;122335;122336;122337;122338;122339;122340;122341;122342;122343;122344;122345;122346;122347;122348;122349;122350;122351;122352;122353;122354;122355;122356;122357;122358;122359;122360;122361;122362;122363;122364;122365;122366;122367;122368;122369;122370;122371;122372;122373;122374;122375;122376;122377;122378;122379;122380;122381;122382;122383;122384;122385;122386;122387;122388;122389;122390;122391;122392;122393;122394;122395;122396;122397;122398;122399;122400;122401;122402;122403;122404;122405;122406;122407;122408;122409;122410;122411;122412;122413;122414;122415;122416;122417;122418;122419;122420;122421;122422;122423;122424;122425;122426;122427;122428;122429;122430;122431;122432;122433;122434;122435;122436;122437;122438;122439;122440;122441;122442;122443;122444;122445;122446;122447;122448;122449;122450;122451;122452;122453;122454;122455;122456;122457;122458;122459;122460;122461;122462 122413 1833 135 TVTAMDVVYALK Unmodified 1309.6952 0.69517413 1366 P62805 HIST1H4A Histone H4 yes yes 0 0 0 0 By MS/MS By MS/MS 3.9 2.71 26 57 17 1 4 7 13 34 116 43 50.851 50.797 2;3 2.1686E-38 27343 20211116_3439_TMUAki_TMT10x_S_F1 280.71 212.72 1068200000 1578200000 1675700 2139000000 720060000 761670000 1156100000 282240000 229280000 400220000 921610000 994410000 1474800000 62051000 2122000000 695160000 827170000 1121200000 314680000 298370000 386020000 867610000 152 152 66 152 150 150 153 152 152 152 152 588900000 840290000 722230 1053400000 506270000 550320000 564020000 149670000 127250000 222330000 487840000 548270000 784880000 39917000 1052100000 486390000 582660000 555570000 174570000 161360000 214150000 459440000 102 102 40 102 102 102 102 102 102 102 102 479270000 737950000 953500 1085600000 213790000 211350000 592050000 132570000 102030000 177890000 433760000 446140000 689890000 22135000 1069900000 208770000 244520000 565590000 140120000 137010000 171870000 408170000 50 50 26 50 48 48 51 50 50 50 50 250670000000 134320000000 116340000000 19757 1366 18152 101072;101073;101074;101075;101076;101077;101078;101079;101080;101081;101082;101083;101084;101085;101086;101087;101088;101089;101090;101091;101092;101093;101094;101095;101096;101097;101098;101099;101100;101101;101102;101103;101104;101105;101106;101107;101108;101109;101110;101111;101112;101113;101114;101115;101116;101117;101118;101119;101120;101121;101122;101123;101124;101125;101126;101127;101128;101129;101130;101131;101132;101133;101134;101135;101136;101137;101138;101139;101140;101141;101142;101143;101144;101145;101146;101147;101148;101149;101150;101151;101152;101153;101154;101155;101156;101157;101158;101159;101160;101161;101162;101163;101164;101165;101166;101167;101168;101169;101170;101171;101172;101173;101174;101175;101176;101177;101178;101179;101180;101181;101182;101183;101184;101185;101186;101187;101188;101189;101190;101191;101192;101193;101194;101195;101196;101197;101198;101199;101200;101201;101202;101203;101204;101205;101206;101207;101208;101209;101210;101211;101212;101213;101214;101215;101216;101217;101218;101219;101220;101221;101222;101223;101224;101225;101226;101227;101228;101229;101230 122463;122464;122465;122466;122467;122468;122469;122470;122471;122472;122473;122474;122475;122476;122477;122478;122479;122480;122481;122482;122483;122484;122485;122486;122487;122488;122489;122490;122491;122492;122493;122494;122495;122496;122497;122498;122499;122500;122501;122502;122503;122504;122505;122506;122507;122508;122509;122510;122511;122512;122513;122514;122515;122516;122517;122518;122519;122520;122521;122522;122523;122524;122525;122526;122527;122528;122529;122530;122531;122532;122533;122534;122535;122536;122537;122538;122539;122540;122541;122542;122543;122544;122545;122546;122547;122548;122549;122550;122551;122552;122553;122554;122555;122556;122557;122558;122559;122560;122561;122562;122563;122564;122565;122566;122567;122568;122569;122570;122571;122572;122573;122574;122575;122576;122577;122578;122579;122580;122581;122582;122583;122584;122585;122586;122587;122588;122589;122590;122591;122592;122593;122594;122595;122596;122597;122598;122599;122600;122601;122602;122603;122604;122605;122606;122607;122608;122609;122610;122611;122612;122613;122614;122615;122616;122617;122618;122619;122620;122621;122622;122623;122624;122625;122626;122627;122628;122629;122630;122631;122632;122633;122634;122635;122636;122637;122638;122639;122640;122641;122642;122643;122644;122645;122646;122647;122648;122649 122591 187 TVTAMDVVYALKR Oxidation (M) 1481.7912 0.79119978 1366 P62805 HIST1H4A Histone H4 yes yes 0 0 1 1 By MS/MS By MS/MS 3.53 1.98 9 14 27 11 4 6 6 43 34 61.52 61.455 2;3 8.4046E-22 18303 20211116_3436_TMUAki_TMT10x_P_F8 169.41 135.98 1677700000 2990900000 29700000 2928500000 2320900000 3599000000 1948600000 3986200000 4179500000 3419700000 2933200000 1562200000 2790600000 154830000 3002000000 2216900000 3633800000 2065100000 4016400000 4110100000 3363200000 2868100000 87 87 52 87 87 87 87 87 87 87 87 755030000 1316900000 12231000 1311200000 1382500000 2493900000 1035300000 1732500000 1787500000 1479300000 1270700000 703060000 1228800000 77938000 1355800000 1317300000 2450600000 1091600000 1792300000 1767200000 1455200000 1241800000 48 48 30 48 48 48 48 48 48 48 48 922680000 1674000000 17469000 1617300000 938460000 1105100000 913280000 2253700000 2392100000 1940400000 1662400000 859160000 1561800000 76896000 1646200000 899650000 1183200000 973480000 2224100000 2342900000 1908000000 1626300000 39 39 22 39 39 39 39 39 39 39 39 553270000000 315290000000 237990000000 19758 1366 18153 101231;101232;101233;101234;101235;101236;101237;101238;101239;101240;101241;101242;101243;101244;101245;101246;101247;101248;101249;101250;101251;101252;101253;101254;101255;101256;101257;101258;101259;101260;101261;101262;101263;101264;101265;101266;101267;101268;101269;101270;101271;101272;101273;101274;101275;101276;101277;101278;101279;101280;101281;101282;101283;101284;101285;101286;101287;101288;101289;101290;101291;101292;101293;101294;101295;101296;101297;101298;101299;101300;101301;101302;101303;101304;101305;101306;101307 122650;122651;122652;122653;122654;122655;122656;122657;122658;122659;122660;122661;122662;122663;122664;122665;122666;122667;122668;122669;122670;122671;122672;122673;122674;122675;122676;122677;122678;122679;122680;122681;122682;122683;122684;122685;122686;122687;122688;122689;122690;122691;122692;122693;122694;122695;122696;122697;122698;122699;122700;122701;122702;122703;122704;122705;122706;122707;122708;122709;122710;122711;122712;122713;122714;122715;122716;122717;122718;122719;122720;122721;122722;122723;122724;122725;122726;122727;122728;122729;122730;122731;122732;122733;122734;122735;122736;122737;122738;122739 122697 1833 90 TVTAMDVVYALKR Unmodified 1465.7963 0.79628516 1366 P62805 HIST1H4A Histone H4 yes yes 0 0 0 1 By MS/MS By MS/MS 3.84 1.08 2 4 30 51 12 2 1 2 68 36 73.289 73.259 2;3 2.7151E-92 22580 20211116_3431_TMUAki_TMT10x_P_F4 369.05 294.79 953010000 1479600000 19522000 1854600000 1000800000 1186600000 1025400000 455420000 301010000 511730000 978040000 887450000 1382000000 92614000 1854100000 960480000 1230900000 1015200000 501620000 361950000 497200000 922520000 118 118 63 116 113 114 115 118 118 116 118 567430000 867940000 15902000 1117500000 665240000 936540000 639640000 288120000 186100000 317200000 586670000 528420000 810820000 59892000 1118300000 638040000 950360000 634850000 326540000 223380000 308380000 553540000 82 82 42 80 79 80 79 82 82 81 82 385590000 611620000 3619800 737100000 335560000 250070000 385780000 167290000 114910000 194530000 391380000 359030000 571180000 32722000 735820000 322440000 280580000 380300000 175080000 138570000 188820000 368990000 36 36 21 36 34 34 36 36 36 35 36 390780000000 197070000000 193710000000 19759 1366 18153 101308;101309;101310;101311;101312;101313;101314;101315;101316;101317;101318;101319;101320;101321;101322;101323;101324;101325;101326;101327;101328;101329;101330;101331;101332;101333;101334;101335;101336;101337;101338;101339;101340;101341;101342;101343;101344;101345;101346;101347;101348;101349;101350;101351;101352;101353;101354;101355;101356;101357;101358;101359;101360;101361;101362;101363;101364;101365;101366;101367;101368;101369;101370;101371;101372;101373;101374;101375;101376;101377;101378;101379;101380;101381;101382;101383;101384;101385;101386;101387;101388;101389;101390;101391;101392;101393;101394;101395;101396;101397;101398;101399;101400;101401;101402;101403;101404;101405;101406;101407;101408;101409;101410;101411 122740;122741;122742;122743;122744;122745;122746;122747;122748;122749;122750;122751;122752;122753;122754;122755;122756;122757;122758;122759;122760;122761;122762;122763;122764;122765;122766;122767;122768;122769;122770;122771;122772;122773;122774;122775;122776;122777;122778;122779;122780;122781;122782;122783;122784;122785;122786;122787;122788;122789;122790;122791;122792;122793;122794;122795;122796;122797;122798;122799;122800;122801;122802;122803;122804;122805;122806;122807;122808;122809;122810;122811;122812;122813;122814;122815;122816;122817;122818;122819;122820;122821;122822;122823;122824;122825;122826;122827;122828;122829;122830;122831;122832;122833;122834;122835;122836;122837;122838;122839;122840;122841;122842;122843;122844;122845;122846;122847;122848;122849;122850;122851;122852;122853;122854;122855;122856;122857;122858;122859;122860;122861;122862;122863;122864 122790 125 TVTATFGYPFR Unmodified 1258.6346 0.63462279 1853 Q16563;Q16563-2 SYPL1 Synaptophysin-like protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 61.725 61.396 2 1.1087E-15 21817 20211116_3441_TMUAki_TMT10x_S_F3 203.29 172.6 15113000 25753000 93654 25260000 16694000 26627000 18376000 16788000 17024000 17542000 19300000 14072000 24028000 1239500 25824000 16047000 26820000 18510000 17588000 17459000 17101000 18547000 4 4 2 4 4 4 4 4 4 4 4 10816000 17755000 66489 17571000 11821000 21316000 13004000 11788000 11683000 12167000 13329000 10070000 16566000 849880 17994000 11360000 21270000 13088000 12478000 12002000 11867000 12807000 3 3 1 3 3 3 3 3 3 3 3 4297400 7998000 27165 7689000 4873000 5310300 5372000 4999400 5340100 5374800 5970600 4001500 7461900 389660 7830300 4686600 5549500 5421900 5110000 5456400 5233900 5740100 1 1 1 1 1 1 1 1 1 1 1 1984300000 1139600000 844630000 19760 1853 18154 101412;101413;101414 122865;122866;122867;122868 122868 4 TVTEIDEKEYISLR Unmodified 1694.8727 0.87268081 1307 P61289;P61289-2;P61289-3 PSME3 Proteasome activator complex subunit 3 yes no 0 0 0 1 By MS/MS 3 0 1 1 54.537 54.157 3 2.9034E-06 18861 20211116_3441_TMUAki_TMT10x_S_F3 109.35 79.66 2735900 4678700 38394 4327700 3192800 3005400 2630200 3986500 3965100 4047000 4226200 2547700 4364400 269010 4420000 3049600 3165300 2738600 4005500 3984600 3950000 4068800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2735900 4678700 38394 4327700 3192800 3005400 2630200 3986500 3965100 4047000 4226200 2547700 4364400 269010 4420000 3049600 3165300 2738600 4005500 3984600 3950000 4068800 1 1 1 1 1 1 1 1 1 1 1 111890000 0 111890000 19761 1307 18155 101415 122869 122869 1 TVTGCFVR Unmodified 938.46439 0.46438634 2339 Q92541 RTF1 RNA polymerase-associated protein RTF1 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 35.599 35.894 2 0.0055908 7764 20211116_3447_TMUAki_TMT10x_S_F8 87.435 4.5216 273840 450320 817.36 426190 641860 536230 358420 254690 208580 198530 328330 254980 420100 28619 438140 608370 533160 373740 271480 223000 196210 313020 1 1 1 1 1 1 1 1 1 1 1 273840 450320 817.36 426190 641860 536230 358420 254690 208580 198530 328330 254980 420100 28619 438140 608370 533160 373740 271480 223000 196210 313020 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18811000 18811000 0 19762 2339 18156 101416;101417;101418 122870;122871;122872 122872 3 TVTIVVR Unmodified 786.49634 0.49633839 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 By MS/MS By MS/MS 4.41 2.25 2 2 3 2 2 2 2 2 9 8 38.007 38.115 2 0.001265 9417 20211116_3428_TMUAki_TMT10x_P_F1 143.02 53.116 28776000 42316000 110760 44054000 36469000 36608000 30105000 28485000 26711000 27841000 32404000 26790000 39492000 2180400 44708000 34788000 37571000 30765000 29352000 27525000 27217000 31083000 28 28 6 28 28 28 28 28 28 28 28 15663000 22233000 11763 23354000 21849000 24806000 14960000 15648000 14498000 15024000 17252000 14583000 20750000 1210700 23768000 20765000 24976000 15521000 16353000 14867000 14699000 16557000 11 11 2 11 11 11 11 11 11 11 11 13112000 20083000 98998 20699000 14620000 11802000 15145000 12837000 12213000 12816000 15152000 12208000 18742000 969660 20940000 14023000 12595000 15244000 12999000 12657000 12518000 14526000 17 17 4 17 17 17 17 17 17 17 17 4918600000 2381700000 2536900000 19763 1147 18157 101419;101420;101421;101422;101423;101424;101425;101426;101427;101428;101429;101430;101431;101432;101433;101434;101435 122873;122874;122875;122876;122877;122878;122879;122880;122881;122882;122883;122884;122885;122886;122887;122888;122889;122890;122891;122892;122893;122894;122895;122896;122897;122898;122899;122900 122873 28 TVTLGGDVFDPHGTLSGGAR Unmodified 1955.9701 0.97010344 423 O95347;O95347-2 SMC2 Structural maintenance of chromosomes protein 2 yes no 0 0 0 0 By MS/MS 6 0 1 1 56.102 56.181 3 6.2194E-09 15946 20211116_3434_TMUAki_TMT10x_P_F6 103.41 84.58 3514200 5890600 115530 6634500 5285100 7614800 4876200 4591400 3582600 3590600 4386400 3272900 5499400 423820 6730400 5064400 7629000 4927500 4790900 3729800 3548000 4206500 1 1 1 1 1 1 1 1 1 1 1 3514200 5890600 115530 6634500 5285100 7614800 4876200 4591400 3582600 3590600 4386400 3272900 5499400 423820 6730400 5064400 7629000 4927500 4790900 3729800 3548000 4206500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 795430000 795430000 0 19764 423 18158 101436 122901 122901 1 TVTLPENEDELESTNRR Unmodified 2001.9603 0.96032661 881 P30876 POLR2B DNA-directed RNA polymerase II subunit RPB2 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 41.222 41.09 3 7.3675E-53 11954 20211116_3429_TMUAki_TMT10x_P_F2 263.71 230.89 1468700 2341400 6589.9 3726300 3638400 3105200 1920900 3024700 3418800 2098600 2998100 1367500 2190000 147540 3694300 3445200 3199900 2084600 3051700 3397600 2087700 2905200 4 4 2 4 4 4 4 4 4 4 4 704540 1121000 763.12 1644100 3104500 2652200 1474700 1486400 1691800 1052000 1495500 655990 1048000 90370 1655400 2935600 2613500 1587800 1557100 1704600 1045300 1448700 2 2 1 2 2 2 2 2 2 2 2 764140 1220400 5826.8 2082200 533880 453060 446190 1538300 1727100 1046600 1502600 711470 1142000 57170 2038900 509510 586420 496820 1494600 1693000 1042400 1456500 2 2 1 2 2 2 2 2 2 2 2 603080000 440380000 162700000 19765 881 18159 101437;101438;101439;101440 122902;122903;122904;122905 122903 4 TVTNAVVTVPAYFNDSQR Unmodified 1980.9905 0.99050453 615 P11142;P11142-2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 0 By MS/MS By MS/MS 6.83 1.24 1 2 4 8 8 12 11 62.435 62.592 2;3 1.634E-170 18729 20211116_3447_TMUAki_TMT10x_S_F8 419.8 380.17 102090000 180810000 1968400 168310000 125840000 217010000 121620000 143980000 136800000 137960000 144800000 95068000 168670000 8911500 173310000 120650000 216430000 124060000 149900000 138790000 134980000 139440000 25 25 9 25 25 25 25 25 25 25 25 66830000 117880000 1599700 107040000 87755000 177490000 84242000 99501000 93668000 95845000 95291000 62236000 109950000 6582100 111020000 84140000 174710000 85925000 104990000 94936000 93757000 91873000 12 12 7 12 12 12 12 12 12 12 12 35260000 62931000 368730 61265000 38088000 39525000 37380000 44481000 43133000 42112000 49511000 32831000 58715000 2329500 62293000 36508000 41718000 38131000 44904000 43855000 41227000 47564000 13 13 2 13 13 13 13 13 13 13 13 136380000000 68930000000 67445000000 19766 615 18160 101441;101442;101443;101444;101445;101446;101447;101448;101449;101450;101451;101452;101453;101454;101455;101456;101457;101458;101459;101460;101461;101462;101463 122906;122907;122908;122909;122910;122911;122912;122913;122914;122915;122916;122917;122918;122919;122920;122921;122922;122923;122924;122925;122926;122927;122928;122929;122930;122931;122932;122933;122934;122935 122930 30 TVTPASSAK Unmodified 860.46035 0.46034682 1852 Q16555;Q16555-2 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 0 By MS/MS 5 0 1 1 30.502 30.434 2 0.00037538 6887 20211116_3433_TMUAki_TMT10x_P_F5 125.82 49.783 313180 505840 0 468050 536270 577400 340180 243010 264090 239860 352080 291570 471860 24438 481790 508970 573960 352960 263860 275120 234390 336920 1 1 0 1 1 1 1 1 1 1 1 313180 505840 0 468050 536270 577400 340180 243010 264090 239860 352080 291570 471860 24438 481790 508970 573960 352960 263860 275120 234390 336920 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12221000 12221000 0 19767 1852 18161 101464 122936 122936 1 TVTSATIVYHLAR Unmodified 1430.7882 0.78816332 2376 Q92900;Q92900-2 UPF1 Regulator of nonsense transcripts 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 46.114 45.95 3 3.2342E-22 13946 20211116_3429_TMUAki_TMT10x_P_F2 171.26 133.58 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19768 2376 18162 101465;101466;101467;101468 122937;122938;122939;122940 122937 4 TVVAPSAVAGK Unmodified 998.57605 0.57604528 2996 Q9NX14;Q9NX14-2 NDUFB11 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial yes no 0 0 0 0 By MS/MS 7 0 1 1 37.645 38.326 2 3.9763E-14 11090 20211116_3446_TMUAki_TMT10x_S_F7 153.97 94.817 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19769 2996 18163 101469 122941 122941 1 TVVEALFQR Unmodified 1061.5869 0.58694431 1267 P57740;P57740-3;P57740-2 NUP107 Nuclear pore complex protein Nup107 yes no 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 62.152 62.393 2 0.00044731 18641 20211116_3447_TMUAki_TMT10x_S_F8 87.308 65.801 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19770 1267 18164 101470;101471 122942;122943 122943 2 TVVGQITVDMMYGGMR 3 Oxidation (M) 1804.8158 0.81577633 330 O75390 CS Citrate synthase, mitochondrial yes yes 0 0 3 0 By MS/MS By MS/MS 6 0 3 1 2 48.798 48.925 2;3 0.00013726 13386 20211116_3445_TMUAki_TMT10x_S_F6 75.695 61.005 6210100 9112600 188960 8894800 6373700 9671100 5913100 13456000 14493000 11679000 10098000 5783100 8502300 630060 9101200 6107200 9889500 6287600 13436000 14213000 11479000 9877300 3 3 1 3 3 3 3 3 3 3 3 1931200 2441100 0 2941000 3103400 4667400 2387800 3420300 3961100 3353300 2753800 1797800 2279700 136130 2990800 2955100 4620300 2508100 3538500 3918000 3277700 2693800 1 1 0 1 1 1 1 1 1 1 1 4278900 6671600 188960 5953800 3270300 5003700 3525300 10035000 10532000 8325700 7344300 3985300 6222600 493930 6110400 3152100 5269100 3779400 9898000 10295000 8201700 7183500 2 2 1 2 2 2 2 2 2 2 2 1477000000 537300000 939690000 19771 330 18165 101472;101473;101474 122944;122945;122946;122947 122947 240;241;242 4 TVVGVPSGK Unmodified 842.48617 0.48616764 2480 Q96GY0 ZC2HC1A Zinc finger C2HC domain-containing protein 1A yes yes 0 0 0 0 By MS/MS 7 0 1 1 38.408 38.847 2 0.013274 10897 20211116_3435_TMUAki_TMT10x_P_F7 64.297 30.294 532310 822080 0 925940 956180 920930 626770 396680 430930 411060 553840 495630 767480 49326 937200 908500 926710 646930 430210 451330 400870 530470 1 1 0 1 1 1 1 1 1 1 1 532310 822080 0 925940 956180 920930 626770 396680 430930 411060 553840 495630 767480 49326 937200 908500 926710 646930 430210 451330 400870 530470 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9558600 9558600 0 19772 2480 18166 101475 122948 122948 1 TVVLHIDGLDDTSRR Unmodified 1695.8904 0.89039656 2979 Q9NVT9 ARMC1 Armadillo repeat-containing protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 44.73 44.878 4 1.1871E-10 12619 20211116_3433_TMUAki_TMT10x_P_F5 139.66 121.84 1361600 2185900 13294 2520900 2596900 2739600 1676400 1865000 1899500 1625700 1949600 1267900 2040900 142580 2551400 2467700 2757800 1755500 1933200 1924400 1597600 1879200 3 3 3 3 3 3 3 3 3 3 3 1008300 1620600 11053 1827500 2271400 2476400 1383500 1415900 1419500 1245600 1476500 938920 1512900 111590 1859500 2156300 2459000 1450800 1488000 1444500 1223500 1422600 2 2 2 2 2 2 2 2 2 2 2 353300 565310 2241.5 693420 325440 263200 293000 449090 479980 380080 473110 328970 527980 30990 691920 311370 298840 304680 445150 479870 374050 456600 1 1 1 1 1 1 1 1 1 1 1 459030000 259360000 199660000 19773 2979 18167 101476;101477;101478;101479 122949;122950;122951 122949 3 TVVSGLVNHVPLEQMQNR Oxidation (M) 2036.0473 0.047307904 1574 Q12904;Q12904-2 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 yes no 0 0 1 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 49.453 49.727 3 6.291E-06 15739 20211116_3446_TMUAki_TMT10x_S_F7 87.275 77.525 4899000 8969500 32753 8931300 7512400 9498700 5931200 11447000 10523000 8932300 8483300 4561600 8369300 454370 9122600 7164200 9685500 6241100 11465000 10432000 8827300 8246700 5 5 3 5 5 5 5 5 5 5 5 2052800 3444900 25936 3532000 4270100 6194900 3349800 4465100 3925200 3531300 3354700 1911600 3214800 225420 3636900 4072800 6107800 3463700 4599100 3947800 3487300 3253800 2 2 2 2 2 2 2 2 2 2 2 2846300 5524600 6816.5 5399200 3242300 3303800 2581500 6981600 6597800 5401000 5128700 2650000 5154500 228950 5485600 3091400 3577600 2777400 6865400 6484300 5340000 4992900 3 3 1 3 3 3 3 3 3 3 3 2318500000 1259900000 1058600000 19774 1574 18168 101480;101481;101482;101483 122952;122953;122954;122955;122956 122955 2120 5 TVVSGLVNHVPLEQMQNR Unmodified 2020.0524 0.052393282 1574 Q12904;Q12904-2 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 55.746 55.786 3 1.1199E-05 15932 20211116_3447_TMUAki_TMT10x_S_F8 82.482 66.083 8672500 14252000 138730 15207000 11303000 13983000 10288000 8851600 8878600 8986700 11033000 8076000 13302000 882130 15428000 10821000 14205000 10445000 9262700 9170600 8771400 10577000 3 3 2 3 3 3 3 3 3 3 3 5812200 9242800 98939 10031000 8663400 11375000 7404100 5996200 5731500 5974100 7350400 5412400 8627500 610990 10197000 8281000 11385000 7524400 6367300 5961500 5835500 7040500 2 2 1 2 2 2 2 2 2 2 2 2860400 5008900 39793 5176400 2639700 2608200 2884100 2855400 3147100 3012700 3682800 2663600 4674400 271140 5230500 2539600 2821000 2920800 2895400 3209200 2935900 3536000 1 1 1 1 1 1 1 1 1 1 1 1462000000 823110000 638880000 19775 1574 18168 101484;101485 122957;122958;122959 122959 3 TVVSGLVQFVPK Unmodified 1272.7442 0.74417324 1219 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 3 1 2 73.469 73.155 2;3 8.559E-06 26532 20211116_3441_TMUAki_TMT10x_S_F3 104.79 72.861 2354000 4372500 8161.1 4163400 2211500 3278900 3321200 3647400 4495400 3981400 3391100 2191900 4079300 200780 4248900 2148900 3403200 3347200 3699800 4482700 3874600 3305500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2354000 4372500 8161.1 4163400 2211500 3278900 3321200 3647400 4495400 3981400 3391100 2191900 4079300 200780 4248900 2148900 3403200 3347200 3699800 4482700 3874600 3305500 1 1 1 1 1 1 1 1 1 1 1 487560000 0 487560000 19776 1219 18169 101486;101487;101488 122960;122961;122962 122962 3 TVVSGLVQFVPKEELQDR Unmodified 2043.1001 0.10005498 1219 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 6.88 0.781 3 3 2 5 3 68.518 68.553 3 4.0722E-17 21704 20211116_3436_TMUAki_TMT10x_P_F8 141.07 120.07 19558000 34264000 52337 24370000 21077000 40600000 28585000 29949000 38332000 37069000 31033000 18208000 31935000 1387400 25803000 20382000 40120000 28904000 31201000 38311000 35910000 30162000 5 5 1 5 5 5 5 5 5 5 5 3841000 6602800 0 5031200 4894300 11049000 5741900 6341100 8309900 7504100 6713300 3575500 6155300 233590 5333600 4707800 10779000 5859500 6719600 8284900 7281000 6525500 1 1 0 1 1 1 1 1 1 1 1 15717000 27662000 52337 19339000 16182000 29551000 22843000 23608000 30022000 29565000 24320000 14633000 25780000 1153800 20470000 15674000 29342000 23044000 24481000 30026000 28629000 23637000 4 4 1 4 4 4 4 4 4 4 4 4196100000 1531800000 2664300000 19777 1219 18170 101489;101490;101491;101492;101493;101494;101495;101496 122963;122964;122965;122966;122967;122968;122969;122970 122966 8 TVVSGSCAAHSLLITTEGK Unmodified 1929.983 0.98297631 3056 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.14 2.75 3 2 2 3 4 51.823 51.905 3;4 3.2958E-41 14389 20211116_3447_TMUAki_TMT10x_S_F8 210.91 193 46119000 72996000 452050 89086000 60725000 79817000 41532000 51877000 45179000 52340000 56907000 42943000 68174000 4276200 89607000 57760000 81256000 43244000 54169000 46218000 51099000 54533000 12 12 8 12 12 12 12 12 12 12 12 23312000 34767000 121510 43458000 39961000 60705000 25528000 25071000 21712000 24649000 27013000 21706000 32474000 2133500 43978000 37952000 59978000 26531000 27276000 22443000 24091000 25894000 5 5 2 5 5 5 5 5 5 5 5 22806000 38230000 330540 45628000 20764000 19112000 16004000 26806000 23467000 27691000 29894000 21237000 35700000 2142700 45629000 19808000 21278000 16713000 26893000 23775000 27008000 28639000 7 7 6 7 7 7 7 7 7 7 7 5782800000 3520900000 2261900000 19778 3056 18171 101497;101498;101499;101500;101501;101502;101503 122971;122972;122973;122974;122975;122976;122977;122978;122979;122980;122981;122982 122982 12 TVVSHSLTTLGLEVAK Unmodified 1653.9301 0.93013611 1006 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 0 0 By MS/MS By MS/MS 6.86 2.03 1 2 4 3 4 59.36 59.556 3;4 7.0693E-22 18014 20211116_3436_TMUAki_TMT10x_P_F8 176.23 153.1 71325000 117190000 566640 115160000 88987000 124590000 78804000 104030000 91704000 99066000 95800000 66412000 109340000 5422500 117770000 85079000 125880000 80866000 106660000 92874000 96958000 92288000 13 13 5 13 13 13 13 13 13 13 13 36876000 56369000 546540 59278000 49218000 90304000 44977000 56120000 50193000 53809000 48013000 34338000 52609000 3569300 60732000 47108000 89314000 46005000 58715000 50757000 52648000 46384000 5 5 3 5 5 5 5 5 5 5 5 34449000 60821000 20101 55884000 39769000 34289000 33827000 47906000 41511000 45257000 47787000 32074000 56734000 1853100 57036000 37971000 36569000 34861000 47941000 42117000 44310000 45904000 8 8 2 8 8 8 8 8 8 8 8 9549200000 5701700000 3847500000 19779 1006 18172 101504;101505;101506;101507;101508;101509;101510 122983;122984;122985;122986;122987;122988;122989;122990;122991;122992;122993;122994;122995 122986 13 TVVTGIEMFHK Oxidation (M) 1276.6486 0.64855829 1097 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 48.394 48.695 3 7.537E-07 15333 20211116_3446_TMUAki_TMT10x_S_F7 129.69 97.844 24509000 39632000 285760 44313000 39348000 38749000 26668000 29800000 32174000 24655000 32456000 22822000 36999000 2477700 44793000 37425000 39617000 27884000 30596000 32500000 24291000 31300000 6 6 5 6 6 6 6 6 6 6 6 13207000 20459000 130400 22676000 27902000 27156000 16703000 15883000 16842000 12254000 17461000 12298000 19098000 1422300 23044000 26480000 27135000 17532000 16609000 17149000 12118000 16825000 3 3 3 3 3 3 3 3 3 3 3 11302000 19174000 155360 21637000 11446000 11593000 9965100 13917000 15332000 12400000 14995000 10524000 17900000 1055400 21749000 10945000 12482000 10352000 13988000 15351000 12173000 14475000 3 3 2 3 3 3 3 3 3 3 3 3062100000 1571200000 1490900000 19780 1097 18173 101511;101512;101513;101514;101515;101516 122996;122997;122998;122999;123000;123001;123002 123001 1458 7 TVVTGIEMFHK Unmodified 1260.6536 0.65364367 1097 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 55.667 56 3 4.0217E-10 17677 20211116_3435_TMUAki_TMT10x_P_F7 160.18 123 23355000 36320000 229670 46757000 23092000 22135000 18299000 14720000 12881000 14749000 24566000 21746000 33930000 1986900 46595000 22023000 23902000 18644000 15341000 13756000 14403000 23336000 4 4 1 4 3 4 4 4 4 4 4 8087600 11824000 0 17759000 6176600 10927000 4575200 4714800 4054800 4653400 7702800 7530100 11055000 608650 17596000 5878600 11414000 4708500 5105400 4277300 4547300 7317700 2 2 0 2 1 2 2 2 2 2 2 15268000 24497000 229670 28998000 16915000 11208000 13723000 10005000 8826200 10095000 16863000 14216000 22875000 1378200 28999000 16145000 12488000 13935000 10236000 9478600 9856100 16019000 2 2 1 2 2 2 2 2 2 2 2 3866500000 1872400000 1994100000 19781 1097 18173 101517;101518;101519;101520 123003;123004;123005;123006 123003 4 TVWDWELMNDIKPIWQRPSK Oxidation (M) 2557.2788 0.2787644 672 P14625 HSP90B1 Endoplasmin yes yes 0 0 1 2 By MS/MS By MS/MS 2 0 4 2 2 75.011 74.904 4;5 6.3243E-09 25738 20211116_3429_TMUAki_TMT10x_P_F2 111.18 96.771 17439000 28856000 175140 26159000 20151000 28559000 26113000 15642000 17117000 18192000 22621000 16239000 26915000 1642200 26913000 19482000 28655000 25897000 16632000 18003000 17662000 21651000 4 4 3 4 4 4 4 4 4 4 4 11408000 19712000 175140 17947000 13837000 22148000 17857000 9728400 9510400 11599000 14628000 10624000 18387000 1143100 18496000 13379000 22024000 17645000 10574000 10222000 11251000 13953000 3 3 3 3 3 3 3 3 3 3 3 6031000 9144000 0 8211900 6314500 6410900 8255400 5913800 7606500 6593000 7992700 5615400 8528800 499130 8416400 6103100 6631000 8252200 6058200 7780400 6411000 7698300 1 1 0 1 1 1 1 1 1 1 1 2412900000 1507300000 905590000 19782 672 18174 101521;101522;101523;101524 123007;123008;123009;123010 123009 747 4 TVYCNVHKHEPLVLFCESCDTLTCR Unmodified 3137.4191 0.41911576 1615 Q13263;Q13263-2 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 1 By MS/MS By MS/MS 7.4 0.49 3 2 2 3 51.696 52.027 4;5 8.839E-38 16058 20211116_3435_TMUAki_TMT10x_P_F7 180.56 173.29 15168000 30952000 395500 33594000 28276000 26440000 18197000 16369000 14043000 15035000 20963000 14126000 28891000 1549400 33978000 26881000 27150000 18857000 17111000 14713000 14739000 20008000 8 8 5 8 8 8 8 8 8 8 8 8136200 15714000 351040 16941000 16793000 21156000 10725000 8995700 8374700 8869900 10498000 7578000 14668000 1099900 17259000 15969000 21019000 11123000 9756200 8698000 8668000 10061000 4 4 3 4 4 4 4 4 4 4 4 7032100 15237000 44459 16653000 11482000 5283600 7472800 7373300 5668000 6165300 10465000 6547800 14223000 449500 16719000 10911000 6130800 7733800 7355000 6015400 6071200 9946700 4 4 2 4 4 4 4 4 4 4 4 6031800000 3638500000 2393300000 19783 1615 18175 101525;101526;101527;101528;101529 123011;123012;123013;123014;123015;123016;123017;123018 123013 8 TVYGGGCSEMLMAHAVTQLANR 2 Oxidation (M) 2397.0875 0.087534513 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 2 0 By MS/MS By MS/MS 4.62 3.16 2 2 1 3 3 5 45.172 45.172 3;4 1.2321E-26 11646 20211116_3447_TMUAki_TMT10x_S_F8 166.29 151.36 5188600 9512500 47318 9164700 6559000 8717300 6178700 9035600 9507300 7666100 8521000 4831300 8874900 467430 9367400 6280700 8915300 6390200 9129800 9491400 7543600 8250400 9 9 4 9 9 9 9 9 9 9 9 2307000 4351900 18652 3743900 3849400 5902800 3672600 3486800 3542100 2956600 3375100 2148100 4058500 216870 3894600 3686800 5825900 3730500 3651200 3603300 2909400 3261000 3 3 2 3 3 3 3 3 3 3 3 2881600 5160600 28665 5420900 2709600 2814500 2506100 5548800 5965200 4709500 5145900 2683200 4816400 250560 5472800 2593800 3089400 2659800 5478500 5888100 4634100 4989400 6 6 2 6 6 6 6 6 6 6 6 4296600000 2133200000 2163400000 19784 1429 18176 101530;101531;101532;101533;101534;101535;101536;101537 123019;123020;123021;123022;123023;123024;123025;123026;123027 123026 1930;1931 9 TVYGGGCSEMLMAHAVTQLANR Oxidation (M) 2381.0926 0.092619891 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 1 0 By MS/MS By MS/MS 5.82 2.79 2 1 4 4 6 5 56.311 56.402 3 1.1296E-27 14097 20211116_3447_TMUAki_TMT10x_S_F8 178.43 167.15 33890000 60143000 105330 58634000 42816000 51532000 38194000 28020000 23608000 29086000 39170000 31553000 56114000 1934000 59817000 40920000 52407000 38532000 29708000 25208000 28363000 37304000 15 15 5 15 15 15 15 15 15 15 15 18714000 32058000 34280 31695000 23517000 36348000 22539000 13761000 11221000 15121000 20147000 17423000 29912000 976730 32429000 22509000 36234000 22563000 15172000 12227000 14712000 19159000 7 7 1 7 7 7 7 7 7 7 7 15176000 28085000 71055 26940000 19298000 15184000 15655000 14259000 12387000 13965000 19022000 14130000 26202000 957300 27388000 18410000 16173000 15969000 14535000 12980000 13651000 18145000 8 8 4 8 8 8 8 8 8 8 8 18092000000 9093700000 8998400000 19785 1429 18176 101538;101539;101540;101541;101542;101543;101544;101545;101546;101547;101548 123028;123029;123030;123031;123032;123033;123034;123035;123036;123037;123038;123039;123040;123041;123042;123043;123044 123043 1930;1931 17 TVYGGGCSEMLMAHAVTQLANR Unmodified 2365.0977 0.097705269 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 2.8 2.64 2 2 1 3 2 64.58 64.383 3 1.2401E-55 19836 20211116_3428_TMUAki_TMT10x_P_F1 223.76 214.23 30182000 49546000 358030 52218000 34970000 35131000 35731000 20844000 17740000 21942000 33659000 28105000 46242000 2809700 52827000 33565000 36522000 35647000 21947000 19399000 21384000 31977000 9 9 6 9 9 9 9 9 9 9 9 16876000 26363000 136150 29238000 18413000 23938000 20160000 10213000 7707600 11238000 17137000 15714000 24610000 1491500 29545000 17703000 24405000 19972000 11107000 8720700 10933000 16239000 4 4 2 4 4 4 4 4 4 4 4 13306000 23183000 221880 22980000 16557000 11194000 15572000 10631000 10032000 10704000 16522000 12391000 21631000 1318100 23281000 15862000 12118000 15675000 10840000 10679000 10451000 15737000 5 5 4 5 5 5 5 5 5 5 5 7152900000 3571700000 3581200000 19786 1429 18176 101549;101550;101551;101552;101553 123045;123046;123047;123048;123049;123050;123051;123052;123053;123054 123046 10 TVYVELLPK Unmodified 1060.6168 0.61684746 1893 Q4G0J3;Q4G0J3-3 LARP7 La-related protein 7 yes no 0 0 0 0 By MS/MS 7 0 1 1 64.365 65.008 2 0.0064988 21437 20211116_3435_TMUAki_TMT10x_P_F7 70.256 29.067 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19787 1893 18177 101554 123055 123055 1 TVYVGNLNSQTTTADQLLEFFK Unmodified 2488.2486 0.24856971 2319 Q8WXA9;Q8WXA9-2 SREK1 Splicing regulatory glutamine/lysine-rich protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 2 1 80.701 80.701 3 1.4355E-26 26068 20211116_3447_TMUAki_TMT10x_S_F8 161.59 145.65 3377300 5407200 19494 5514900 4044800 5213800 4524000 3891500 3744700 3766000 4268300 3144600 5045900 292760 5614000 3890600 5300300 4539700 4019600 3862200 3683200 4101300 2 2 1 2 2 2 2 2 2 2 2 1756300 2675100 0 2989700 1738100 3268600 2170400 1820400 1750200 1623100 2023900 1635200 2497400 130600 3032000 1676500 3280100 2166000 1918000 1808700 1593300 1943900 1 1 0 1 1 1 1 1 1 1 1 1621000 2732100 19494 2525200 2306700 1945200 2353600 2071100 1994400 2142900 2244500 1509400 2548600 162160 2582000 2214200 2020200 2373800 2101600 2053600 2089900 2157400 1 1 1 1 1 1 1 1 1 1 1 1866400000 1484800000 381690000 19788 2319 18178 101555;101556;101557 123056;123057 123057 2 TVYVSVLPTTADF Unmodified 1411.7235 0.72349737 1002 P41252 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 By MS/MS By MS/MS 5.8 0.748 2 2 1 3 2 79.997 80.003 2 0.0029095 26953 20211116_3433_TMUAki_TMT10x_P_F5 67.563 41.179 13042000 21227000 383550 20395000 13372000 19053000 16080000 12632000 11133000 13342000 16438000 12146000 19804000 1139300 20845000 12910000 19348000 16016000 13188000 11730000 13001000 15692000 5 5 3 5 5 5 5 5 5 5 5 8390600 13246000 54885 12637000 7309100 13766000 9344600 8454300 7107600 8954500 10553000 7812500 12357000 427590 12952000 7059800 13835000 9302900 8878800 7450900 8724900 10074000 3 3 1 3 3 3 3 3 3 3 3 4651800 7981700 328670 7757300 6062500 5287000 6735500 4177200 4025000 4387200 5884100 4333700 7446900 711730 7892600 5849900 5513500 6713000 4309400 4279300 4276100 5618600 2 2 2 2 2 2 2 2 2 2 2 2170000000 984800000 1185200000 19789 1002 18179 101558;101559;101560;101561;101562 123058;123059;123060;123061;123062;123063 123058 6 TWFDKPNFNR Unmodified 1323.636 0.63601977 1940 Q5T8P6;Q5T8P6-2;Q5T8P6-3;Q5T8P6-5;Q5T8P6-4 RBM26 RNA-binding protein 26 yes no 0 0 0 1 By MS/MS 3 0 1 1 53.443 53.292 3 0.090858 17392 20211116_3430_TMUAki_TMT10x_P_F3 44.299 21.064 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19790 1940 18180 101563 123064 123064 1 TWGADVINMTTVPEVVLAK Unmodified 2043.0711 0.071063038 1596 Q13126;Q13126-7;Q13126-4;Q13126-6;Q13126-5;Q13126-3;Q13126-2 MTAP S-methyl-5'-thioadenosine phosphorylase yes no 0 0 0 0 By MS/MS 8 0 1 1 79.919 79.924 3 0.1039 26344 20211116_3436_TMUAki_TMT10x_P_F8 21.667 10.054 1653400 2611800 13770 2589000 1701100 2891100 1991800 1373200 1351700 1418800 1901800 1539600 2437000 150580 2647400 1639200 2892500 1985300 1474100 1422600 1383800 1817500 1 1 1 1 1 1 1 1 1 1 1 1653400 2611800 13770 2589000 1701100 2891100 1991800 1373200 1351700 1418800 1901800 1539600 2437000 150580 2647400 1639200 2892500 1985300 1474100 1422600 1383800 1817500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 362650000 362650000 0 19791 1596 18181 101564 123065 123065 1 TWNDPSVQQDIK Unmodified 1429.6838 0.68375782 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 By MS/MS 4 0 1 1 50.168 50.331 3 0.0058821 14519 20211116_3431_TMUAki_TMT10x_P_F4 61.11 38.231 9831900 14196000 119480 18473000 41047000 24801000 16845000 14241000 14524000 10947000 15613000 9154700 13262000 1287000 18638000 38752000 24638000 18280000 14914000 14916000 10827000 15028000 2 2 1 2 2 2 2 2 2 2 2 9831900 14196000 119480 18473000 41047000 24801000 16845000 14241000 14524000 10947000 15613000 9154700 13262000 1287000 18638000 38752000 24638000 18280000 14914000 14916000 10827000 15028000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 357030000 357030000 0 19792 614 18182 101565 123066;123067 123066 2 TWRPNHPQAFVGSVR Unmodified 1750.9016 0.90157036 3046 Q9P031 CCDC59 Thyroid transcription factor 1-associated protein 26 yes yes 0 0 0 1 By MS/MS By matching 4.67 0.471 1 2 2 1 35.438 35.491 4 1.6722E-14 8837 20211116_3433_TMUAki_TMT10x_P_F5 155.06 127.73 871170 1461700 10160 1680500 2328600 2029200 1239900 961510 967100 908430 1231500 811220 1364700 101510 1704200 2206000 2021700 1306100 1029900 1005200 889410 1179800 2 2 1 2 2 2 2 2 2 2 2 871170 1461700 10160 1680500 2328600 2029200 1239900 961510 967100 908430 1231500 811220 1364700 101510 1704200 2206000 2021700 1306100 1029900 1005200 889410 1179800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 158910000 145950000 12960000 19793 3046 18183 101566;101567;101568 123068;123069 123069 2 TWTLCGTPEYLAPEIILSK Unmodified 2191.1235 0.12349254 706;773 P17612;P17612-2;P22694-10;P22612;P22694;P22694-2;P22694-8;P22694-4;P22694-3;P22694-5;P22694-7;P22694-6;P22694-9 PRKACA;PRKACB;PRKACG cAMP-dependent protein kinase catalytic subunit alpha;cAMP-dependent protein kinase catalytic subunit beta;cAMP-dependent protein kinase catalytic subunit gamma no no 0 0 0 0 By MS/MS 8 0 1 1 80.098 80.085 3 9.9678E-07 25837 20211116_3447_TMUAki_TMT10x_S_F8 98.165 80.676 4296700 7165100 0 6271200 5679600 3992500 5832500 2343700 2071500 3048800 4585400 4000400 6682400 345660 6426800 5447700 4170800 5791700 2487200 2361200 2948500 4345600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4296700 7165100 0 6271200 5679600 3992500 5832500 2343700 2071500 3048800 4585400 4000400 6682400 345660 6426800 5447700 4170800 5791700 2487200 2361200 2948500 4345600 1 1 0 1 1 1 1 1 1 1 1 790790000 0 790790000 19794 706;773 18184 101569 123070 123070 1 TWTVVDAK Unmodified 918.48108 0.48108226 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 By MS/MS 6 0 1 1 50.372 50.514 2 0.0010722 14026 20211116_3445_TMUAki_TMT10x_S_F6 128.69 97.383 3309200 5512900 4201.5 6502500 3378800 2528300 3286300 3494400 3149000 3556700 4552300 3081200 5147800 279250 6504300 3237700 2842500 3334100 3506000 3259400 3471100 4348000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3309200 5512900 4201.5 6502500 3378800 2528300 3286300 3494400 3149000 3556700 4552300 3081200 5147800 279250 6504300 3237700 2842500 3334100 3506000 3259400 3471100 4348000 1 1 1 1 1 1 1 1 1 1 1 95987000 0 95987000 19795 648 18185 101570 123071 123071 1 TYADYESVNECMEGVCK Oxidation (M) 2069.8016 0.80164241 1454 P84090 ERH Enhancer of rudimentary homolog yes yes 0 0 1 0 By MS/MS By MS/MS 3.09 1.08 1 2 4 3 1 7 4 48.075 48.043 2;3;4 1.7426E-15 13518 20211116_3440_TMUAki_TMT10x_S_F2 146.78 136.72 26667000 44113000 131920 62773000 54920000 53967000 32062000 47376000 55859000 31626000 45494000 24829000 41232000 2502900 62589000 52079000 55373000 34453000 48030000 55418000 31536000 44207000 15 15 4 15 15 15 15 15 15 15 15 13234000 21401000 114750 30029000 45264000 45507000 23638000 21400000 24488000 14691000 20459000 12321000 20002000 1504100 30257000 42855000 44863000 25134000 22773000 24733000 14624000 19861000 9 9 2 9 9 9 9 9 9 9 9 13434000 22712000 17168 32744000 9656500 8460700 8423300 25977000 31371000 16935000 25034000 12508000 21230000 998820 32332000 9224000 10511000 9319000 25257000 30685000 16912000 24346000 6 6 2 6 6 6 6 6 6 6 6 7201300000 4769500000 2431800000 19796 1454 18186 101571;101572;101573;101574;101575;101576;101577;101578;101579;101580;101581 123072;123073;123074;123075;123076;123077;123078;123079;123080;123081;123082;123083;123084;123085;123086;123087 123085 1958 16 TYADYESVNECMEGVCK Unmodified 2053.8067 0.80672779 1454 P84090 ERH Enhancer of rudimentary homolog yes yes 0 0 0 0 By MS/MS By MS/MS 3.7 0.9 1 3 4 2 6 4 57.918 57.851 2;3 1.6938E-69 17614 20211116_3431_TMUAki_TMT10x_P_F4 305.11 301.58 40824000 68287000 294730 85288000 43722000 43707000 37166000 26962000 20279000 25994000 47431000 38012000 63783000 3071000 85186000 41771000 46714000 37519000 28229000 22333000 25427000 44915000 11 11 6 11 11 11 11 11 11 11 11 15422000 23977000 167590 29909000 27145000 29124000 23603000 10923000 9259200 10959000 17750000 14360000 22395000 1574800 30081000 25948000 29309000 23683000 12025000 10349000 10702000 16860000 6 6 4 6 6 6 6 6 6 6 6 25402000 44310000 127140 55379000 16576000 14583000 13563000 16039000 11020000 15035000 29682000 23652000 41387000 1496200 55104000 15823000 17405000 13836000 16204000 11984000 14725000 28055000 5 5 2 5 5 5 5 5 5 5 5 10483000000 6897900000 3585000000 19797 1454 18186 101582;101583;101584;101585;101586;101587;101588;101589;101590;101591 123088;123089;123090;123091;123092;123093;123094;123095;123096;123097;123098 123092 11 TYAEPLTAAMVEFYTMSQER Unmodified 2337.0657 0.065719664 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.707 1 2 1 1 3 81.299 81.314 3 5.5119E-07 26340 20211116_3447_TMUAki_TMT10x_S_F8 94.632 80.474 1618100 2498400 6988.6 2258000 1601900 2321600 1891900 1598800 1719700 1645100 1761700 1506500 2330400 126040 2321400 1542800 2344900 1898600 1663400 1758500 1604800 1698100 2 2 1 2 2 2 2 2 2 2 2 684350 1278800 6988.6 1138800 657520 1337900 873830 853850 903230 873570 1050500 637250 1192700 62874 1174600 636320 1339800 875960 893150 922820 852360 1008800 1 1 1 1 1 1 1 1 1 1 1 933750 1219700 0 1119200 944430 983700 1018100 744990 816430 771510 711230 869300 1137700 63171 1146800 906480 1005100 1022600 770300 835670 752410 689360 1 1 0 1 1 1 1 1 1 1 1 767910000 254560000 513350000 19798 1695 18187 101592;101593;101594;101595 123099;123100 123100 2 TYAIMISR Oxidation (M) 969.49535 0.49535211 1561 Q12765;Q12765-2 SCRN1 Secernin-1 yes no 0 0 1 0 By MS/MS By MS/MS 8 0 2 1 1 40.815 40.991 2 0.031503 9895 20211116_3447_TMUAki_TMT10x_S_F8 70.525 40.021 2962600 4903100 39515 5036900 3883200 4211600 3083300 5085900 5196700 4303100 4826900 2758600 4575600 275210 5116600 3704300 4361000 3234700 5103400 5181100 4234900 4667800 3 3 2 3 3 3 3 3 3 3 3 874570 1419400 0 1437400 1799500 2058100 1070300 1491300 1460400 1164800 1319600 814150 1324600 65334 1474400 1705800 2045600 1135800 1535100 1463700 1151000 1277300 1 1 0 1 1 1 1 1 1 1 1 2088000 3483600 39515 3599400 2083600 2153500 2013000 3594600 3736200 3138400 3507300 1944500 3251000 209880 3642200 1998500 2315400 2098900 3568400 3717400 3083900 3390400 2 2 2 2 2 2 2 2 2 2 2 166890000 91711000 75177000 19799 1561 18188 101596;101597 123101;123102 123101 2109 2 TYCYLLPTFAFAHK Unmodified 1730.849 0.84904901 3333 Q9Y606;Q9Y606-2 PUS1 tRNA pseudouridine synthase A, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 75.554 75.55 3 0.00012716 25112 20211116_3433_TMUAki_TMT10x_P_F5 84.297 70.432 9728000 16494000 22831 14111000 11843000 15540000 11741000 11520000 9219900 10912000 12312000 9057400 15381000 802900 14585000 11351000 15653000 11837000 11897000 9599700 10682000 11781000 3 3 1 3 3 3 3 3 3 3 3 6097700 10055000 0 8400900 6122200 11664000 7052600 7357800 6049400 6767600 7512900 5677100 9376100 451370 8735900 5890100 11585000 7074100 7680600 6250100 6633900 7202100 2 2 0 2 2 2 2 2 2 2 2 3630300 6438700 22831 5710000 5720700 3875600 4688200 4161900 3170500 4144600 4799200 3380300 6005300 351530 5849200 5460700 4067800 4762500 4216600 3349700 4048500 4579200 1 1 1 1 1 1 1 1 1 1 1 1365200000 784630000 580600000 19800 3333 18189 101598;101599;101600;101601 123103;123104;123105 123104 3 TYDAASYICEAAFDEVK Unmodified 1951.851 0.85095909 1006 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 0 0 By MS/MS By MS/MS 3.17 1.21 1 3 3 3 2 9 3 77.581 77.547 2;3 6.9014E-47 25692 20211116_3431_TMUAki_TMT10x_P_F4 244.18 229.21 62683000 109660000 1011000 105130000 66770000 106590000 78767000 58721000 57903000 68054000 76946000 58367000 102300000 5710000 107590000 64354000 107420000 78623000 62399000 60495000 66080000 73638000 13 13 5 13 13 13 13 13 13 13 13 48239000 81052000 1011000 77014000 45036000 87991000 58811000 44438000 44362000 50496000 57247000 44922000 75615000 4756500 79016000 43581000 87983000 58487000 47561000 46220000 49067000 54825000 11 11 5 11 11 11 11 11 11 11 11 14444000 28605000 0 28118000 21734000 18602000 19955000 14283000 13541000 17558000 19699000 13446000 26690000 953510 28577000 20773000 19441000 20136000 14838000 14275000 17013000 18812000 2 2 0 2 2 2 2 2 2 2 2 14927000000 10502000000 4425400000 19801 1006 18190 101602;101603;101604;101605;101606;101607;101608;101609;101610;101611;101612;101613 123106;123107;123108;123109;123110;123111;123112;123113;123114;123115;123116;123117;123118;123119 123111 14 TYDATTHFETTCDDIK Unmodified 1916.8098 0.80982255 1133 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 0 By MS/MS By MS/MS 3.44 1.22 1 3 4 4 4 9 7 44.933 44.932 3;4 1.2589E-29 15020 20211116_3441_TMUAki_TMT10x_S_F3 195.54 184.28 64500000 100730000 863460 151630000 158280000 133390000 84683000 99067000 110240000 72157000 104040000 60058000 94179000 6937700 150820000 149930000 136240000 90537000 101650000 110820000 71581000 100560000 21 21 14 21 21 21 21 21 21 21 21 34998000 54981000 334420 82828000 140450000 118240000 69011000 56649000 61195000 40369000 56073000 32585000 51407000 4190100 83061000 132860000 116890000 73494000 60218000 62416000 40097000 54250000 13 13 8 13 13 13 13 13 13 13 13 29502000 45745000 529040 68801000 17828000 15147000 15672000 42418000 49049000 31788000 47969000 27473000 42772000 2747600 67758000 17070000 19353000 17043000 41434000 48400000 31484000 46307000 8 8 6 8 8 8 8 8 8 8 8 9792700000 6600700000 3192000000 19802 1133 18191 101614;101615;101616;101617;101618;101619;101620;101621;101622;101623;101624;101625;101626;101627;101628;101629 123120;123121;123122;123123;123124;123125;123126;123127;123128;123129;123130;123131;123132;123133;123134;123135;123136;123137;123138;123139;123140 123134 21 TYDATTHFETTCDDIKNIYK Unmodified 2435.0951 0.095105537 1133 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 1 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 55.218 55.452 4 6.8471E-18 16076 20211116_3445_TMUAki_TMT10x_S_F6 142.3 133.01 6726500 15475000 258840 9830500 15071000 23309000 10920000 24589000 22116000 21578000 17218000 6265000 14419000 915780 10629000 14362000 22943000 11640000 24846000 21835000 21198000 16761000 3 3 3 3 3 3 3 3 3 3 3 2180200 4746600 144800 3035700 5657100 12103000 5630300 7089000 6705900 6286800 5166100 2031100 4422700 364400 3353300 5432400 11658000 5745700 7436700 6720400 6173000 5031200 1 1 1 1 1 1 1 1 1 1 1 4546300 10729000 114040 6794900 9414100 11206000 5289600 17500000 15410000 15291000 12052000 4233900 9996200 551380 7275700 8929900 11285000 5894400 17409000 15115000 15025000 11730000 2 2 2 2 2 2 2 2 2 2 2 2595400000 856390000 1739000000 19803 1133 18192 101630;101631;101632 123141;123142;123143 123143 3 TYDATTHFETTCDDIKNIYKR Unmodified 2591.1962 0.19621656 1133 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 2 By MS/MS 7.5 0.5 1 1 2 50.97 51.349 5 6.6488E-35 15819 20211116_3435_TMUAki_TMT10x_P_F7 189.77 175.01 1893700 3652600 15085 2700900 4195000 11504000 4717000 12165000 8920300 8129300 5311100 1763300 3404700 203290 2954200 4036400 11191000 4887500 12215000 8762900 8105800 5235200 1 1 1 1 1 1 1 1 1 1 1 1893700 3652600 15085 2700900 4195000 11504000 4717000 12165000 8920300 8129300 5311100 1763300 3404700 203290 2954200 4036400 11191000 4887500 12215000 8762900 8105800 5235200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1696800000 1696800000 0 19804 1133 18193 101633;101634 123144 123144 1 TYDSYLGDDYVR Unmodified 1465.6361 0.63613893 49 CON__Q29443;CON__Q0IIK2 yes no 0 0 0 0 By MS/MS 4 0 1 1 52.764 52.93 2 0.080293 15577 20211116_3431_TMUAki_TMT10x_P_F4 53.211 40.985 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19805 49 18194 101635 123145 123145 1 TYEAALETIQNMSK Unmodified 1597.7658 0.76577289 73 O00231;O00231-2 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 0 0 0 0 By MS/MS By MS/MS 6.6 0.49 2 3 2 3 74.286 74.362 2;3 2.7257E-29 25895 20211116_3446_TMUAki_TMT10x_S_F7 206.36 158.8 25488000 42667000 161240 42467000 28106000 26511000 28061000 14512000 13978000 17689000 26324000 23732000 39812000 2195400 43099000 26951000 27722000 28030000 15455000 15274000 17145000 25011000 6 6 4 6 6 6 6 6 6 6 6 8976000 13437000 38841 13614000 8548700 12140000 9179400 5200100 5394200 6090300 8368300 8357500 12539000 724710 13854000 8211800 12303000 9160900 5664000 5758800 5911400 7980500 2 2 1 2 2 2 2 2 2 2 2 16512000 29229000 122390 28853000 19557000 14370000 18881000 9311700 8583700 11599000 17955000 15374000 27272000 1470700 29245000 18739000 15419000 18869000 9791300 9515600 11234000 17031000 4 4 3 4 4 4 4 4 4 4 4 2912000000 1147600000 1764400000 19806 73 18195 101636;101637;101638;101639;101640 123146;123147;123148;123149;123150;123151 123151 6 TYEAALETIQNMSK Oxidation (M) 1613.7607 0.76068752 73 O00231;O00231-2 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 0 0 1 0 By MS/MS 6 0 1 1 60.574 60.58 3 0.00065458 18177 20211116_3445_TMUAki_TMT10x_S_F6 75.589 55.162 7402700 13520000 171380 12524000 9440200 7232600 7680500 9364700 8602800 8950100 10138000 6893800 12612000 779510 12768000 9016400 7742400 7911200 9401400 8766000 8758300 9732200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7402700 13520000 171380 12524000 9440200 7232600 7680500 9364700 8602800 8950100 10138000 6893800 12612000 779510 12768000 9016400 7742400 7911200 9401400 8766000 8758300 9732200 2 2 1 2 2 2 2 2 2 2 2 359990000 0 359990000 19807 73 18195 101641 123152;123153 123152 39 2 TYEEGLKHEANNPQLK Unmodified 1869.9221 0.92209062 897 P31948;P31948-2 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 1 By MS/MS By MS/MS 4.6 0.49 2 3 3 2 38.576 38.647 4;5 3.9832E-15 9014 20211116_3444_TMUAki_TMT10x_S_F5 151.9 124.25 5696800 9361300 55542 9448800 28615000 19079000 9680000 13823000 17666000 9188500 11795000 5304200 8735400 781780 9777100 26961000 18725000 11056000 14181000 17414000 9165000 11560000 6 6 3 6 6 6 6 6 6 6 6 4166100 7000000 36030 6619500 27023000 17613000 8306800 10356000 13408000 6863500 8637900 3878900 6530300 645810 6944300 25439000 17102000 9562500 10791000 13248000 6847200 8480300 4 4 2 4 4 4 4 4 4 4 4 1530700 2361300 19512 2829200 1592000 1466200 1373200 3467800 4257700 2325000 3157100 1425300 2205100 135970 2832900 1521600 1622700 1493600 3390600 4166200 2317800 3079600 2 2 1 2 2 2 2 2 2 2 2 1006400000 780170000 226230000 19808 897 18196 101642;101643;101644;101645;101646 123154;123155;123156;123157;123158;123159 123159 6 TYEIWHR Unmodified 1003.4876 0.48756462 1735 Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 0 0 By MS/MS 6 0 1 1 36.252 36.417 3 0.015514 8317 20211116_3445_TMUAki_TMT10x_S_F6 73.637 59.642 78138 108620 0 130730 76257 67128 77821 70796 57717 70411 94140 72752 101440 6195.2 130850 73142 72391 78233 71784 60890 68783 89686 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78138 108620 0 130730 76257 67128 77821 70796 57717 70411 94140 72752 101440 6195.2 130850 73142 72391 78233 71784 60890 68783 89686 1 1 0 1 1 1 1 1 1 1 1 4524100 0 4524100 19809 1735 18197 101647 123160 123160 1 TYEVSLR Unmodified 866.44978 0.44978213 1847 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 37.065 37.197 2 0.0067709 9770 20211116_3431_TMUAki_TMT10x_P_F4 112.37 38.179 414710 619020 0 671460 383750 359460 484130 283160 300170 315230 446300 386120 577810 32027 676630 370350 383730 480130 292700 318610 306550 426000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 414710 619020 0 671460 383750 359460 484130 283160 300170 315230 446300 386120 577810 32027 676630 370350 383730 480130 292700 318610 306550 426000 1 1 0 1 1 1 1 1 1 1 1 52954000 0 52954000 19810 1847 18198 101648;101649;101650 123161;123162;123163 123161 3 TYFPHFDLSHGSAQVK Unmodified 1832.8846 0.8845829 36 CON__P01966;P69905 HBA1 Hemoglobin subunit alpha yes no 0 0 0 0 By MS/MS By MS/MS 4.18 2.79 2 2 3 1 3 7 4 52.062 52.022 3;4;5 9.4667E-43 18259 20211116_3441_TMUAki_TMT10x_S_F3 224.59 192.32 + 25505000 40950000 576790 51765000 46803000 66944000 36612000 66155000 81772000 68867000 49900000 23750000 38251000 2660700 52271000 44637000 67244000 39068000 67382000 80082000 67147000 49123000 11 11 7 11 11 11 11 11 11 11 11 13554000 21703000 323000 26631000 35566000 57398000 25949000 35247000 44349000 37506000 25120000 12621000 20269000 1459600 27280000 33863000 56078000 27394000 37023000 43630000 36538000 24827000 6 6 3 6 6 6 6 6 6 6 6 11951000 19247000 253790 25133000 11237000 9545900 10662000 30907000 37422000 31360000 24780000 11129000 17982000 1201100 24991000 10775000 11166000 11674000 30360000 36451000 30609000 24296000 5 5 4 5 5 5 5 5 5 5 5 8363900000 5739700000 2624300000 19811 36 18199 101651;101652;101653;101654;101655;101656;101657;101658;101659;101660;101661 123164;123165;123166;123167;123168;123169;123170;123171;123172;123173;123174;123175 123173 12 TYFTDKK Unmodified 901.45453 0.45453316 834 P27824;P27824-2;P27824-3 CANX Calnexin yes no 0 0 0 1 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 36.719 37.024 3 0.064985 8362 20211116_3447_TMUAki_TMT10x_S_F8 51.066 22.554 2393300 4030300 20687 3589900 3519700 3440900 3132500 2660600 2986400 2553800 3345700 2228600 3759000 233160 3691200 3366400 3497000 3193200 2741300 3057300 2498600 3216300 5 5 4 5 5 5 5 5 5 5 5 842480 1340800 3005.1 1158600 1488400 1630800 1043200 812170 911160 852240 1024400 784450 1250400 81374 1201900 1416100 1613900 1077300 868270 936750 830700 984720 2 2 1 2 2 2 2 2 2 2 2 1550800 2689500 17682 2431300 2031300 1810100 2089400 1848400 2075200 1701500 2321300 1444100 2508600 151780 2489300 1950200 1883200 2115800 1873000 2120500 1667900 2231600 3 3 3 3 3 3 3 3 3 3 3 149430000 94928000 54506000 19812 834 18200 101662;101663;101664;101665 123176;123177;123178 123178 3 TYGGCEGPDAMYVK Oxidation (M) 1562.6381 0.63812954 1793 Q15369 TCEB1 Transcription elongation factor B polypeptide 1 yes yes 0 0 1 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 41.791 41.906 3 1.3781E-06 11265 20211116_3431_TMUAki_TMT10x_P_F4 113.24 100.1 3772600 6364300 20385 8746600 13839000 9683600 5639500 5341800 6832500 3727300 6505100 3512600 5947500 446460 8768700 13063000 9709600 6186100 5601900 6887100 3706800 6285400 4 4 1 4 4 4 4 4 4 4 4 2975800 5038200 0 6720900 13078000 9056300 4845100 4418700 5504800 2930000 5131600 2770500 4707400 361900 6772500 12331000 8977700 5365500 4682200 5558100 2922900 4961800 3 3 0 3 3 3 3 3 3 3 3 796870 1326100 20385 2025700 761390 627270 794370 923030 1327700 797280 1373500 742110 1240100 84567 1996300 732120 731930 820560 919790 1329000 783850 1323500 1 1 1 1 1 1 1 1 1 1 1 375850000 296790000 79055000 19813 1793 18201 101666;101667;101668 123179;123180;123181;123182 123180 2416 4 TYHALCNEEFTIFNR Unmodified 1913.873 0.87303193 2192 Q8N3U4;Q8N3U4-2 STAG2 Cohesin subunit SA-2 yes no 0 0 0 0 By MS/MS 5 0 1 1 56.803 56.996 3 3.3994E-07 17482 20211116_3433_TMUAki_TMT10x_P_F5 103.79 94.756 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19814 2192 18202 101669 123183 123183 1 TYHALSNLPK Unmodified 1142.6084 0.60840804 73 O00231;O00231-2 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 37.71 38.067 3 0.0010426 9095 20211116_3436_TMUAki_TMT10x_P_F8 81.017 55.358 1250800 1937200 6824.3 2104900 1851900 1641200 1443700 1091100 1158900 1055100 1451400 1164600 1808200 115430 2128600 1765600 1688200 1477000 1136100 1201800 1032000 1391000 2 2 1 2 2 2 2 2 2 2 2 540460 791830 0 897530 1142100 940670 622680 444010 456300 413450 565360 503190 739260 50185 908810 1081800 944470 653620 475590 475360 405060 542010 1 1 0 1 1 1 1 1 1 1 1 710300 1145300 6824.3 1207400 709790 700550 821060 647110 702610 641660 886000 661410 1068900 65242 1219800 683790 743740 823350 660470 726470 626900 849020 1 1 1 1 1 1 1 1 1 1 1 83265000 56668000 26597000 19815 73 18203 101670;101671 123184;123185 123184 2 TYHEVVDEIYFK Unmodified 1541.7402 0.74021007 1949 Q5VTL8;Q5VTL8-2 PRPF38B Pre-mRNA-splicing factor 38B yes no 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 58.947 59.077 3 4.4448E-06 18126 20211116_3431_TMUAki_TMT10x_P_F4 107.97 92.994 3590100 5848900 4309.9 5937600 4890500 7719500 4557700 4678800 4211400 4027200 4201000 3342800 5457900 319880 6077700 4681100 7685800 4629800 4891100 4299200 3960000 4052800 1 1 1 1 1 1 1 1 1 1 1 3590100 5848900 4309.9 5937600 4890500 7719500 4557700 4678800 4211400 4027200 4201000 3342800 5457900 319880 6077700 4681100 7685800 4629800 4891100 4299200 3960000 4052800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 351880000 351880000 0 19816 1949 18204 101672;101673 123186;123187 123187 2 TYIPPKGETK Unmodified 1132.6128 0.61282471 574 P09429;B2RPK0 HMGB1;HMGB1P1 High mobility group protein B1;Putative high mobility group protein B1-like 1 yes no 0 0 0 1 By MS/MS By MS/MS 6.5 1.12 1 1 1 1 2 2 34.918 35.207 3 0.005368 9343 20211116_3435_TMUAki_TMT10x_P_F7 67.153 49.289 1562300 2653600 25701 2708900 3237600 3012200 2070000 1935000 1929200 1687700 2163700 1454900 2476300 176620 2764200 3076600 3025700 2156300 2014400 1977100 1658500 2080000 8 8 6 8 8 8 8 8 8 8 8 1161700 1907700 19470 1969200 2754100 2620500 1599800 1411700 1404300 1230400 1540400 1081800 1780300 136440 2014300 2612900 2602200 1677100 1490900 1442000 1209200 1481700 6 6 4 6 6 6 6 6 6 6 6 400560 745890 6231.4 739680 483480 391740 470120 523390 524900 457230 623340 373010 695970 40178 749830 463630 423500 479260 523530 535090 449280 598270 2 2 2 2 2 2 2 2 2 2 2 51891000 32374000 19517000 19817 574 18205 101674;101675;101676;101677 123188;123189;123190;123191 123188 4 TYIPPKGETKK Unmodified 1260.7078 0.70778773 574 P09429;B2RPK0 HMGB1;HMGB1P1 High mobility group protein B1;Putative high mobility group protein B1-like 1 yes no 0 0 0 2 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 33.727 33.656 4 0.0004283 9359 20211116_3439_TMUAki_TMT10x_S_F1 88.552 74.295 4545800 7615500 4849.2 5448800 7472500 6659700 5595600 2745400 4238500 3529400 5352600 4231900 7098000 337460 5729800 7112500 6621800 5732000 3012400 4410900 3414700 5129000 3 3 2 3 3 3 3 3 3 3 3 3281700 5400500 134.56 3738000 5962300 5475800 3867900 2008900 3004700 2474700 3814100 3054900 5033000 224820 3956800 5658800 5393300 4006100 2231400 3123200 2397700 3654300 2 2 1 2 2 2 2 2 2 2 2 1264100 2215000 4714.7 1710700 1510100 1183900 1727700 736500 1233900 1054700 1538500 1177000 2064900 112640 1773000 1453700 1228500 1725900 780920 1287700 1017000 1474700 1 1 1 1 1 1 1 1 1 1 1 345460000 213780000 131680000 19818 574 18206 101678;101679;101680 123192;123193;123194 123194 3 TYIQCIAAISR Unmodified 1294.6704 0.67035637 2116 Q86VP6;Q86VP6-2;Q86VP6-3 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 1 3 58.448 58.149 2 2.2053E-05 20455 20211116_3441_TMUAki_TMT10x_S_F3 109.72 83.616 28253000 50105000 191520 51671000 48945000 65602000 43674000 37726000 30829000 31561000 42670000 26308000 46759000 1782000 52810000 46810000 65345000 44179000 39580000 32345000 31078000 40795000 4 4 3 4 4 4 4 4 4 4 4 24892000 43924000 145040 45660000 45675000 62355000 40890000 32834000 26241000 26995000 37910000 23178000 40992000 1461300 46708000 43684000 61830000 41273000 34699000 27751000 26605000 36209000 3 3 2 3 3 3 3 3 3 3 3 3361700 6180700 46482 6010300 3270600 3247400 2784500 4891800 4587500 4566200 4759800 3130400 5766600 320750 6102200 3126600 3515600 2905600 4880900 4594200 4473000 4586300 1 1 1 1 1 1 1 1 1 1 1 3500700000 1974700000 1526000000 19819 2116 18207 101681;101682;101683;101684 123195;123196;123197;123198;123199 123198 5 TYLLDGSCMVEESGTLESQLEATK Oxidation (M) 2676.2146 0.21462833 1663 Q13813;Q13813-3;Q13813-2 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 1 0 By MS/MS 3 0 1 1 74.837 74.651 3 7.7179E-19 27093 20211116_3441_TMUAki_TMT10x_S_F3 131.56 123.37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19820 1663 18208 101685 123200 123200 2232 1 TYLPSQVSR Unmodified 1049.5506 0.55055881 936 P35606;P35606-2 COPB2 Coatomer subunit beta' yes no 0 0 0 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 36.302 36.608 2 2.1679E-05 9908 20211116_3435_TMUAki_TMT10x_P_F7 156.46 128.03 563700 906230 4477.7 1133600 1779400 1185200 801710 743320 842030 651910 848490 524890 846460 66966 1141100 1681800 1194300 865580 775320 855080 640460 818300 4 4 3 4 4 4 4 4 4 4 4 462760 732340 4477.7 913980 1682200 1104200 696850 573750 660990 527440 674420 430910 684030 59618 922420 1588500 1101300 757260 608740 674490 517040 650170 3 3 3 3 3 3 3 3 3 3 3 100940 173890 0 219580 97166 80962 104860 169570 181030 124470 174070 93977 162430 7347.7 218710 93298 93020 108320 166580 180590 123420 168130 1 1 0 1 1 1 1 1 1 1 1 52090000 43950000 8139600 19821 936 18209 101686;101687;101688;101689 123201;123202;123203;123204 123202 4 TYLTITDTQLVNSLLEK Unmodified 1951.0514 0.051373454 1920 Q5JTH9;Q5JTH9-2;Q5JTH9-3 RRP12 RRP12-like protein yes no 0 0 0 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 2 2 80.101 80.106 3 1.2972E-07 25865 20211116_3447_TMUAki_TMT10x_S_F8 104.2 79.895 3016800 5082600 20913 4563400 3206800 4388000 3652400 2894900 2938500 3369600 3959900 2808600 4740700 207500 4689500 3083100 4447500 3659400 3032900 3056900 3271300 3788400 2 2 1 2 2 2 2 2 2 2 2 1500900 2336300 0 2222300 1364900 2600800 1632200 1358900 1428100 1591700 1923800 1397000 2179600 57769 2280800 1311300 2598200 1635300 1451300 1479400 1545000 1840400 1 1 0 1 1 1 1 1 1 1 1 1515800 2746300 20913 2341100 1841900 1787200 2020200 1536000 1510400 1777800 2036200 1411600 2561100 149730 2408700 1771800 1849200 2024100 1581600 1577500 1726400 1948000 1 1 1 1 1 1 1 1 1 1 1 1671500000 666270000 1005300000 19822 1920 18210 101690;101691;101692;101693 123205;123206 123206 2 TYNASITLQQQLK Unmodified 1506.8042 0.80420731 624 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 3 3 4 2 54.077 54.012 2;3 1.7183E-62 15776 20211116_3436_TMUAki_TMT10x_P_F8 299.29 246.58 18805000 30816000 387230 30677000 27674000 34954000 22467000 29409000 26409000 24917000 27426000 17512000 28754000 2044200 31370000 26428000 35220000 23183000 30046000 26730000 24520000 26425000 6 6 6 6 6 6 6 6 6 6 6 11715000 18497000 229500 18651000 19918000 28065000 15989000 18425000 16058000 15337000 16695000 10909000 17260000 1300000 19157000 19013000 27794000 16425000 19128000 16356000 15106000 16085000 3 3 3 3 3 3 3 3 3 3 3 7090500 12319000 157730 12026000 7756900 6888700 6478100 10984000 10351000 9579400 10731000 6603100 11493000 744180 12213000 7415100 7426700 6757800 10919000 10374000 9413600 10340000 3 3 3 3 3 3 3 3 3 3 3 2406200000 1480600000 925590000 19823 624 18211 101694;101695;101696;101697;101698;101699 123207;123208;123209;123210;123211;123212;123213;123214 123211 8 TYPVQEYFLEDCIQMTHFVPPPK Oxidation (M) 2854.3346 0.3346243 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 1 0 By MS/MS By MS/MS 6.18 1.03 4 2 4 1 7 4 76.715 76.75 3;4 1.4038E-15 26444 20211116_3435_TMUAki_TMT10x_P_F7 131.18 118.13 27140000 46771000 266840 39391000 29554000 49690000 32337000 33144000 30511000 34139000 35819000 25270000 43614000 2358600 40861000 28413000 49614000 32599000 34564000 31308000 33301000 34389000 12 12 6 12 12 12 12 12 12 12 12 19906000 34017000 187140 29135000 18494000 39709000 22624000 23735000 22230000 24513000 25147000 18535000 31723000 1712200 30225000 17842000 39441000 22720000 24961000 22736000 23909000 24169000 8 8 4 8 8 8 8 8 8 8 8 7234100 12754000 79696 10257000 11060000 9981200 9713800 9409600 8281300 9625400 10672000 6735600 11891000 646400 10636000 10571000 10172000 9879200 9602400 8572300 9391800 10221000 4 4 2 4 4 4 4 4 4 4 4 10182000000 6378800000 3803200000 19824 1546 18212 101700;101701;101702;101703;101704;101705;101706;101707;101708;101709;101710 123215;123216;123217;123218;123219;123220;123221;123222;123223;123224;123225;123226 123217 2085 12 TYPVQEYFLEDCIQMTHFVPPPKDK Oxidation (M) 3097.4565 0.45653035 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 1 1 By MS/MS By matching 6.5 0.5 1 1 1 1 70.843 70.938 5 0.013185 22095 20211116_3434_TMUAki_TMT10x_P_F6 43.162 37.369 3161100 4817400 0 4005800 3660800 6789300 3977400 3825100 3562100 3675000 3868900 2943200 4492100 259150 4185600 3517500 6678200 4005100 4034200 3652900 3595400 3722700 1 1 0 1 1 1 1 1 1 1 1 3161100 4817400 0 4005800 3660800 6789300 3977400 3825100 3562100 3675000 3868900 2943200 4492100 259150 4185600 3517500 6678200 4005100 4034200 3652900 3595400 3722700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 888150000 268540000 619610000 19825 1546 18213 101711;101712 123227 123227 2085 1 TYQELLVNQNPIAQPLASR Unmodified 2154.1433 0.14331678 2997 Q9NX24 NHP2 H/ACA ribonucleoprotein complex subunit 2 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 3 3 4 2 68.569 68.792 2;3 2.8511E-117 21801 20211116_3436_TMUAki_TMT10x_P_F8 362.62 325.64 13430000 23691000 2164.1 21229000 17533000 21881000 16954000 19960000 18093000 18678000 19028000 12504000 22097000 871500 21841000 16791000 22207000 17263000 20352000 18390000 18295000 18327000 6 6 1 6 6 6 6 6 6 6 6 6620900 10186000 0 9399900 6326400 12404000 7777200 8516700 7927500 7708300 8102900 6164100 9502000 462230 9689900 6097200 12363000 7817500 8831200 8064600 7561700 7811200 3 3 0 3 3 3 3 3 3 3 3 6808900 13504000 2164.1 11829000 11206000 9476900 9177200 11443000 10166000 10970000 10925000 6339800 12595000 409270 12151000 10694000 9843700 9445600 11521000 10326000 10733000 10516000 3 3 1 3 3 3 3 3 3 3 3 8640900000 5523300000 3117600000 19826 2997 18214 101713;101714;101715;101716;101717;101718 123228;123229;123230;123231;123232;123233 123230 6 TYQGLESLEEVCVYHSGVPIFHEGMK Oxidation (M) 3024.3997 0.39974375 3117 Q9UHD1;Q9UHD1-2 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 yes no 0 0 1 0 By MS/MS By MS/MS 5.14 1.46 1 2 1 1 2 3 4 68.178 68.241 4 4.0539E-18 21335 20211116_3445_TMUAki_TMT10x_S_F6 138.23 129.27 33080000 59242000 371110 52700000 39192000 51634000 42902000 41587000 39643000 43496000 44209000 30802000 55255000 2807800 54208000 37683000 52441000 43223000 42847000 40635000 42402000 42505000 12 12 6 12 12 12 12 12 12 12 12 10183000 16535000 114270 15337000 10447000 21705000 12285000 12490000 11383000 12886000 12800000 9481900 15424000 930080 15826000 10068000 21512000 12338000 13176000 11670000 12569000 12304000 3 3 2 3 3 3 3 3 3 3 3 22898000 42707000 256830 37363000 28746000 29928000 30617000 29097000 28261000 30610000 31409000 21320000 39830000 1877700 38383000 27615000 30929000 30885000 29672000 28965000 29833000 30201000 9 9 4 9 9 9 9 9 9 9 9 10127000000 4433400000 5693200000 19827 3117 18215 101719;101720;101721;101722;101723;101724;101725 123234;123235;123236;123237;123238;123239;123240;123241;123242;123243;123244;123245 123243 3141 12 TYQVKPIR Unmodified 1003.5815 0.581465 1141 P50579;P50579-3;P50579-2 METAP2 Methionine aminopeptidase 2 yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 33.405 33.411 3 0.0026862 8872 20211116_3429_TMUAki_TMT10x_P_F2 86.67 60.228 807350 1318000 8264.1 1381000 1161900 1010300 833220 692340 722690 674360 967290 751780 1230000 79602 1398900 1106300 1045000 858940 719440 748730 659360 925540 2 2 2 2 2 2 2 2 2 2 2 376190 599700 2750.1 619300 737900 674910 396490 353510 374730 351270 465580 350290 559660 38818 631240 699120 676900 419350 375580 385400 343160 446320 1 1 1 1 1 1 1 1 1 1 1 431150 718260 5514.1 761750 424000 335430 436740 338830 347970 323090 501710 401490 670380 40784 767660 407210 368090 439590 343860 363340 316190 479220 1 1 1 1 1 1 1 1 1 1 1 22374000 7960700 14413000 19828 1141 18216 101726;101727;101728 123246;123247;123248 123247 3 TYRPELIK Unmodified 1018.5811 0.58113065 2284 Q8TEA8 DTD1 D-tyrosyl-tRNA(Tyr) deacylase 1 yes yes 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 37.887 38.27 3 0.039858 10561 20211116_3435_TMUAki_TMT10x_P_F7 53.517 26.515 2375200 3749300 0 3845700 2943800 2652800 2482600 1686600 1784700 1714700 2636000 2211300 3498800 176030 3898600 2809200 2754300 2520800 1764400 1876400 1673500 2516500 2 2 0 2 2 2 2 2 2 2 2 1169500 1754900 0 1777400 1780100 1671100 1112400 744790 834380 772820 1246700 1088700 1637600 83948 1810100 1688700 1688100 1154600 804840 875630 753620 1189900 1 1 0 1 1 1 1 1 1 1 1 1205700 1994400 0 2068300 1163700 981720 1370300 941810 950370 941890 1389200 1122500 1861300 92080 2088500 1120600 1066200 1366100 959590 1000800 919900 1326600 1 1 0 1 1 1 1 1 1 1 1 41064000 32024000 9039900 19829 2284 18217 101729;101730;101731 123249 123249 1 TYSLGSALRPSTSR Unmodified 1494.7791 0.77905519 561 P08670 VIM Vimentin yes yes 0 0 0 1 By MS/MS By MS/MS 2.62 1.22 2 2 1 3 3 5 36.323 36.263 3 5.6366E-51 12308 20211116_3441_TMUAki_TMT10x_S_F3 278.64 220.47 13153000 20051000 72109 25387000 24701000 21644000 14081000 18816000 21096000 15335000 19932000 12246000 18729000 1216400 25466000 23416000 22217000 15056000 19169000 21113000 15121000 19263000 12 12 6 12 12 12 12 12 12 12 12 6660000 10054000 45114 13206000 19712000 17074000 9439100 9654600 11007000 7770500 10604000 6201200 9393300 734660 13307000 18643000 16989000 10160000 10134000 11114000 7666700 10242000 5 5 2 5 5 5 5 5 5 5 5 6492600 9996600 26994 12181000 4988900 4570000 4642300 9161200 10089000 7564800 9327900 6044900 9336000 481750 12158000 4772600 5228300 4895600 9035000 9998800 7453900 9021800 7 7 4 7 7 7 7 7 7 7 7 2351400000 1509300000 842110000 19830 561 18218 101732;101733;101734;101735;101736;101737;101738;101739 123250;123251;123252;123253;123254;123255;123256;123257;123258;123259;123260;123261;123262 123257 13 TYSMGGAYTAEQENEPTVGVIPR Oxidation (M) 2485.1431 0.14311836 416 O95239;O95239-2 KIF4A Chromosome-associated kinesin KIF4A yes no 0 0 1 0 By MS/MS 3.5 0.5 1 1 2 52.433 52.288 3 2.9148E-08 15799 20211116_3442_TMUAki_TMT10x_S_F4 99.93 92.397 876960 1699200 7629.5 1470200 1097000 1013800 735360 1763400 1553200 1477800 1486700 816590 1584700 82898 1509200 1043200 1077800 790130 1746500 1542000 1455100 1436200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 876960 1699200 7629.5 1470200 1097000 1013800 735360 1763400 1553200 1477800 1486700 816590 1584700 82898 1509200 1043200 1077800 790130 1746500 1542000 1455100 1436200 1 1 1 1 1 1 1 1 1 1 1 297030000 0 297030000 19831 416 18219 101740;101741 123263 123263 312 1 TYSTSFTPMYHAVTK Oxidation (M) 1748.808 0.80797206 466 P00390;P00390-2;P00390-3;P00390-5;P00390-4 GSR Glutathione reductase, mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 4.5 3.5 1 1 1 1 44.047 44.032 3 5.4995E-07 11574 20211116_3428_TMUAki_TMT10x_P_F1 114.64 99.096 1019500 1821500 15618 2285900 1829700 2144600 1010000 1910500 1979100 1462300 1607700 949350 1701400 110430 2297100 1734800 2188200 1097400 1940900 1957800 1446600 1562400 2 2 2 2 2 2 2 2 2 2 2 462190 791360 14505 1002800 1386100 1668300 697120 931510 941030 646400 697450 430450 739210 64776 1018100 1312600 1642000 750690 975750 938020 643060 680340 1 1 1 1 1 1 1 1 1 1 1 557290 1030100 1113.2 1283100 443660 476270 312880 979030 1038100 815890 910220 518900 962140 45649 1279000 422180 546250 346660 965160 1019800 803560 882020 1 1 1 1 1 1 1 1 1 1 1 171580000 125490000 46092000 19832 466 18220 101742;101743 123264;123265 123264 354 2 TYSVGVCTFAVGPEQGGCK Unmodified 2015.9081 0.90809681 630 P11717 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 0 0 0 0 By MS/MS 8 0 1 1 29.423 29.694 3 0.024385 5520 20211116_3447_TMUAki_TMT10x_S_F8 40.844 30.787 10757 16668 0 18032 18225 10480 9677.6 15475 16042 10843 19227 10016 15558 0 18187 17260 11255 10460 15343 16154 10781 18449 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10757 16668 0 18032 18225 10480 9677.6 15475 16042 10843 19227 10016 15558 0 18187 17260 11255 10460 15343 16154 10781 18449 1 1 0 1 1 1 1 1 1 1 1 1155200 0 1155200 19833 630 18221 101744 123266 123266 1 TYSYLTPDLWK Unmodified 1385.6867 0.68671794 687 P15880 RPS2 40S ribosomal protein S2 yes yes 0 0 0 0 By MS/MS By MS/MS 6.18 2.52 2 1 4 4 5 6 74.442 74.465 2;3 1.1286E-29 24101 20211116_3436_TMUAki_TMT10x_P_F8 262.63 205.04 94163000 160900000 396680 159560000 121400000 109380000 123720000 47434000 41691000 57913000 104070000 87672000 150130000 7846200 162120000 116440000 113130000 122830000 51668000 48216000 56130000 98461000 15 15 7 15 15 15 15 15 15 15 15 45277000 77904000 79144 76749000 64229000 73636000 73895000 20584000 18183000 27195000 48361000 42155000 72688000 3755900 78331000 61812000 74015000 72725000 23803000 22007000 26288000 45718000 6 6 2 6 6 6 6 6 6 6 6 48886000 82993000 317530 82810000 57175000 35739000 49822000 26851000 23508000 30718000 55708000 45518000 77441000 4090300 83789000 54632000 39113000 50107000 27864000 26209000 29842000 52743000 9 9 5 9 9 9 9 9 9 9 9 14816000000 9459300000 5357100000 19834 687 18222 101745;101746;101747;101748;101749;101750;101751;101752;101753;101754;101755 123267;123268;123269;123270;123271;123272;123273;123274;123275;123276;123277;123278;123279;123280;123281 123270 15 TYTAYVDLEK Unmodified 1201.5867 0.58666954 1219 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 56.088 56.24 2 2.3337E-10 16075 20211116_3444_TMUAki_TMT10x_S_F5 179.1 148.53 4302900 6583400 66673 7258600 7775700 8853600 5786800 4284900 4782300 4690800 5579700 4006900 6145600 467510 7381100 7409700 8818400 5942700 4599300 4937400 4564500 5357900 1 1 1 1 1 1 1 1 1 1 1 4302900 6583400 66673 7258600 7775700 8853600 5786800 4284900 4782300 4690800 5579700 4006900 6145600 467510 7381100 7409700 8818400 5942700 4599300 4937400 4564500 5357900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 485010000 485010000 0 19835 1219 18223 101756;101757;101758;101759 123282;123283;123284;123285 123285 4 TYTDELTPIESAVSVFK Unmodified 1898.9513 0.95132506 338 O75489 NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 6 0.707 1 2 1 1 3 79.629 79.634 2;3 2.1198E-15 25957 20211116_3445_TMUAki_TMT10x_S_F6 143.97 131.81 14175000 23072000 235990 21249000 16263000 16042000 16136000 7568900 6872200 7461000 13960000 13200000 21522000 1389200 21728000 15603000 16473000 16087000 8119900 7648100 7291300 13247000 4 4 2 4 4 4 4 4 4 4 4 3776700 6089500 0 5625700 2286400 3910700 2635200 1725300 1864400 1984200 3585000 3516200 5680400 259810 5746200 2199000 4040600 2630900 1872200 1991500 1927200 3405000 1 1 0 1 1 1 1 1 1 1 1 10399000 16982000 235990 15623000 13977000 12132000 13500000 5843600 5007700 5476800 10375000 9683800 15841000 1129400 15982000 13404000 12433000 13456000 6247800 5656600 5364100 9841900 3 3 2 3 3 3 3 3 3 3 3 2793600000 777510000 2016000000 19836 338 18224 101760;101761;101762;101763 123286;123287;123288;123289;123290 123288 5 TYTIANQFPLNK Unmodified 1408.7351 0.73506511 2941 Q9NSD9;Q9NSD9-2 FARSB Phenylalanine--tRNA ligase beta subunit yes no 0 0 0 0 By MS/MS 2 0 1 1 61.762 61.483 3 5.6877E-06 20240 20211116_3429_TMUAki_TMT10x_P_F2 103.91 89.464 7345900 12447000 255380 12665000 11182000 16231000 10303000 9620400 9272300 9433700 10177000 6841700 11615000 900760 12958000 10715000 16167000 10465000 10109000 9510200 9221200 9789300 2 2 2 2 2 2 2 2 2 2 2 7345900 12447000 255380 12665000 11182000 16231000 10303000 9620400 9272300 9433700 10177000 6841700 11615000 900760 12958000 10715000 16167000 10465000 10109000 9510200 9221200 9789300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 495580000 495580000 0 19837 2941 18225 101764 123291;123292 123292 2 TYTIRNEHVDYVDVGGAYVGPTQNR Unmodified 2823.3576 0.35761966 757 P21397 MAOA Amine oxidase [flavin-containing] A yes yes 0 0 0 1 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 47.513 47.728 4 5.8595E-87 12483 20211116_3434_TMUAki_TMT10x_P_F6 262.78 249.89 5791200 12351000 164150 12860000 9842400 9217600 7345600 10622000 11098000 9326100 11099000 5393400 11526000 523210 13029000 9384500 9646600 7697700 10690000 11126000 9161800 10707000 6 6 4 6 6 6 6 6 6 6 6 1664400 3121400 76048 3795900 4130900 4885700 3086200 2759000 2851900 2351900 2878900 1550300 2915100 243410 3841100 3939200 4862200 3177800 2900300 2912500 2313800 2776300 2 2 2 2 2 2 2 2 2 2 2 4126800 9229300 88098 9064400 5711500 4331900 4259400 7863400 8246200 6974200 8219900 3843100 8611300 279800 9188100 5445200 4784400 4519900 7790100 8213700 6848000 7930200 4 4 2 4 4 4 4 4 4 4 4 3263800000 1491800000 1771900000 19838 757 18226 101765;101766;101767;101768;101769 123293;123294;123295;123296;123297;123298 123294 6 TYTQLVR Unmodified 879.48142 0.48141661 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 35.033 35.352 2 0.038773 7428 20211116_3434_TMUAki_TMT10x_P_F6 75.213 52.477 622950 983340 4901.3 930390 966060 867430 717870 543180 582230 500910 753730 580050 917370 59107 951950 920240 880280 736940 567370 604340 490960 721790 3 3 2 3 3 3 3 3 3 3 3 458320 718520 908.21 661290 803480 739750 540100 387340 424490 368420 549100 426730 670240 41765 679840 763730 740850 558040 411040 441330 360590 525840 2 2 1 2 2 2 2 2 2 2 2 164640 264830 3993.1 269100 162580 127680 177770 155850 157740 132490 204630 153320 247130 17342 272110 156510 139430 178910 156330 163010 130360 195950 1 1 1 1 1 1 1 1 1 1 1 49574000 44848000 4726000 19839 352 18227 101770;101771;101772;101773 123299;123300 123299 2 TYYMSGGLQPVPIVFR Oxidation (M) 1842.9338 0.93384128 619 P11177;P11177-2 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes no 0 0 1 0 By MS/MS 3 0 1 1 71.128 70.714 3 0.0091513 25583 20211116_3441_TMUAki_TMT10x_S_F3 54.44 31.637 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19840 619 18228 101774 123301 123301 630 1 VAAAESMPLLLECAR Oxidation (M) 1645.8168 0.81676261 84 O00410;O00410-2;O00410-3 IPO5 Importin-5 yes no 0 0 1 0 By MS/MS By MS/MS 4 0.756 2 3 2 3 4 55.943 55.824 2;3 1.3628E-07 16737 20211116_3431_TMUAki_TMT10x_P_F4 106.35 93.757 11293000 19966000 18765 19972000 15423000 19330000 13400000 14666000 14355000 14000000 16029000 10513000 18630000 732140 20365000 14720000 19627000 13727000 15127000 14621000 13700000 15411000 4 4 1 4 4 4 4 4 4 4 4 6539300 10416000 0 10510000 10391000 14296000 8658500 7160900 7307000 7266200 8218700 6087600 9719200 453540 10772000 9910400 14170000 8831400 7643900 7525100 7092200 7900100 2 2 0 2 2 2 2 2 2 2 2 4754000 9549900 18765 9461700 5032200 5034100 4741200 7504900 7048200 6733500 7810100 4425500 8910800 278600 9592500 4810100 5457000 4895900 7482700 7096400 6608100 7510500 2 2 1 2 2 2 2 2 2 2 2 1946200000 965460000 980720000 19841 84 18229 101775;101776;101777;101778;101779;101780;101781 123302;123303;123304;123305;123306;123307;123308 123304 57 7 VAAAESMPLLLECAR Unmodified 1629.8218 0.82184798 84 O00410;O00410-2;O00410-3 IPO5 Importin-5 yes no 0 0 0 0 By MS/MS By MS/MS 5.33 0.667 1 4 4 5 4 70.446 70.434 2;3 1.7322E-51 22197 20211116_3445_TMUAki_TMT10x_S_F6 289.71 258.6 27837000 45437000 99166 46687000 32123000 32424000 31860000 21544000 18269000 21797000 32097000 25917000 42403000 2099300 47327000 30777000 33667000 31910000 22462000 19671000 21278000 30535000 10 10 2 10 10 10 10 10 10 10 10 10920000 16892000 18162 17284000 11205000 16939000 12790000 8221800 6628700 8067400 11888000 10166000 15764000 739690 17599000 10772000 17082000 12700000 8794600 7199800 7885400 11305000 4 4 1 4 4 4 4 4 4 4 4 16917000 28545000 81004 29403000 20918000 15485000 19069000 13323000 11640000 13730000 20210000 15751000 26639000 1359600 29727000 20004000 16585000 19209000 13667000 12471000 13393000 19230000 6 6 1 6 6 6 6 6 6 6 6 4504400000 1997700000 2506700000 19842 84 18229 101782;101783;101784;101785;101786;101787;101788;101789;101790 123309;123310;123311;123312;123313;123314;123315;123316;123317;123318;123319 123317 11 VAAALPGMESTQDR Oxidation (M) 1460.6929 0.6929423 742;743 P20340;P20340-3;P20340-2;P20340-4 RAB6A Ras-related protein Rab-6A no no 0 0 1 0 By MS/MS 3 0 1 1 38.586 38.315 3 0.036666 12342 20211116_3441_TMUAki_TMT10x_S_F3 45.207 32.007 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19843 742;743 18230 101791 123320 123320 852 1 VAAALTK Unmodified 672.41703 0.41702544 36 CON__P01966 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.756 2 3 2 3 4 39.486 39.778 2 0.006108 11219 20211116_3446_TMUAki_TMT10x_S_F7 105.12 0 + 17461000 28408000 134600 27829000 30338000 36296000 25649000 25235000 31430000 27623000 26406000 16259000 26506000 1707500 28558000 28977000 36205000 26441000 26287000 31544000 26880000 25629000 7 7 6 7 7 7 7 7 7 7 7 11858000 18807000 96458 18582000 25941000 30550000 18063000 16900000 21234000 18495000 17609000 11041000 17548000 1224300 19152000 24678000 30077000 18832000 17919000 21335000 17997000 17099000 4 4 3 4 4 4 4 4 4 4 4 5603300 9601800 38138 9247300 4397700 5746400 7585600 8335400 10196000 9128400 8797300 5217500 8958100 483210 9406500 4299200 6128100 7608500 8367900 10209000 8882600 8529800 3 3 3 3 3 3 3 3 3 3 3 602840000 431490000 171340000 19844 36 18231 101792;101793;101794;101795;101796;101797;101798 123321;123322;123323;123324;123325;123326;123327;123328 123326 8 VAAAPASGALRR Unmodified 1138.6571 0.65708956 518 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 1 By MS/MS 2 0 1 1 29.734 29.504 3 0.0028592 7371 20211116_3429_TMUAki_TMT10x_P_F2 69.342 44.216 193130 294070 9280.5 272500 295370 425990 213950 215160 208400 215830 244580 179890 274320 26093 281810 281730 419760 221110 229420 213540 210770 234820 1 1 1 1 1 1 1 1 1 1 1 193130 294070 9280.5 272500 295370 425990 213950 215160 208400 215830 244580 179890 274320 26093 281810 281730 419760 221110 229420 213540 210770 234820 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6413500 6413500 0 19845 518 18232 101799 123329 123329 1 VAAAVPVIISR Unmodified 1094.6812 0.68117905 1737 Q14919;Q14919-2 DRAP1 Dr1-associated corepressor yes no 0 0 0 0 By MS/MS 2 0 1 1 55.339 55.133 2 0.0034302 16407 20211116_3440_TMUAki_TMT10x_S_F2 75.378 52.72 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19846 1737 18233 101800 123330 123330 1 VAAFKEEHIYPTIIGTERDER Unmodified 2473.2601 0.26013745 3333 Q9Y606;Q9Y606-2 PUS1 tRNA pseudouridine synthase A, mitochondrial yes no 0 0 0 2 By MS/MS 7.5 0.5 1 1 2 50.828 51.022 5 1.8107E-07 16260 20211116_3446_TMUAki_TMT10x_S_F7 95.622 82.585 2157900 3724200 21066 3771600 2126600 1562300 1793000 2936900 2608100 2381500 2894900 2009400 3475200 198100 3811200 2031900 1758700 1861400 2900000 2627800 2348700 2783700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2157900 3724200 21066 3771600 2126600 1562300 1793000 2936900 2608100 2381500 2894900 2009400 3475200 198100 3811200 2031900 1758700 1861400 2900000 2627800 2348700 2783700 1 1 1 1 1 1 1 1 1 1 1 399320000 0 399320000 19847 3333 18234 101801;101802 123331 123331 1 VAAGLQIK Unmodified 798.49634 0.49633839 1739 Q14974 KPNB1 Importin subunit beta-1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 46.725 46.869 2 0.00045614 12816 20211116_3436_TMUAki_TMT10x_P_F8 154.11 62.529 30889000 50881000 275010 50284000 39985000 52169000 36522000 43233000 44257000 37313000 43304000 28763000 47476000 2936100 51369000 38269000 52829000 37467000 44230000 44652000 36686000 41803000 6 6 5 6 6 6 6 6 6 6 6 16751000 26803000 128950 26366000 24464000 37738000 22077000 23833000 24312000 20419000 22894000 15598000 25009000 1608400 27099000 23405000 37431000 22588000 24831000 24585000 20083000 22129000 3 3 2 3 3 3 3 3 3 3 3 14138000 24078000 146070 23918000 15521000 14431000 14445000 19400000 19945000 16894000 20409000 13165000 22467000 1327700 24270000 14864000 15398000 14879000 19399000 20067000 16603000 19674000 3 3 3 3 3 3 3 3 3 3 3 1424000000 740000000 683970000 19848 1739 18235 101803;101804;101805;101806;101807;101808 123332;123333;123334;123335;123336;123337 123334 6 VAAGRLPR Unmodified 838.51372 0.51371979 1114 P49736 MCM2 DNA replication licensing factor MCM2 yes yes 0 0 0 1 By MS/MS By MS/MS 1.67 0.943 2 1 1 2 28.153 28.093 3 0.013473 8447 20211116_3441_TMUAki_TMT10x_S_F3 66.799 29.154 280410 446090 3103.8 356190 329580 347500 346510 242310 264060 256440 339650 261110 415910 23214 369590 316620 352180 348040 252090 274920 249870 325300 3 3 1 3 3 3 3 3 3 3 3 103950 147350 0 120410 112830 172640 114040 89222 93292 87420 120350 96787 137390 8571.6 125520 108210 170770 114970 94871 96777 85453 115260 1 1 0 1 1 1 1 1 1 1 1 176460 298740 3103.8 235770 216750 174860 232470 153090 170770 169020 219300 164320 278520 14643 244060 208410 181410 233070 157220 178150 164410 210040 2 2 1 2 2 2 2 2 2 2 2 11339000 1459100 9880200 19849 1114 18236 101809;101810;101811 123338;123339 123339 2 VAAHPILR Unmodified 875.53412 0.53412088 3192 Q9UNH7;Q9UNH7-2 SNX6 Sorting nexin-6;Sorting nexin-6, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 29.989 30.021 3 0.0054554 6046 20211116_3428_TMUAki_TMT10x_P_F1 77.741 48.592 624450 1043800 2929.1 1039000 703640 684610 715370 440620 475790 682490 668920 581430 973970 53338 1055000 675010 713810 717600 467550 501370 656590 639310 3 3 2 3 3 3 3 3 3 3 3 190520 277500 0 279520 233570 296730 198650 135280 153970 234100 191460 177370 258940 14126 285270 222940 297600 201940 148650 159920 224560 183540 1 1 0 1 1 1 1 1 1 1 1 433930 766310 2929.1 759480 470070 387870 516720 305340 321820 448390 477460 404060 715030 39212 769720 452080 416210 515660 318900 341450 432030 455770 2 2 2 2 2 2 2 2 2 2 2 42410000 12455000 29955000 19850 3192 18237 101812;101813 123340;123341;123342 123340 3 VAAIEALNDGELQK Unmodified 1469.7726 0.77257283 1137 P50502;Q8IZP2 ST13;ST13P4 Hsc70-interacting protein;Putative protein FAM10A4 yes no 0 0 0 0 By MS/MS By MS/MS 4.33 1.18 1 2 3 4 2 6 6 64.316 64.286 2;3 3.1721E-60 20205 20211116_3431_TMUAki_TMT10x_P_F4 298.36 228.26 59520000 98445000 807620 103900000 93707000 107730000 73146000 89518000 88019000 79276000 86366000 55425000 91880000 5708800 105670000 89379000 109100000 75731000 91628000 88835000 77847000 83365000 13 13 10 13 13 13 13 13 13 13 13 30111000 49522000 510270 52766000 62804000 81794000 46956000 48354000 47687000 42275000 44881000 28040000 46221000 3412100 54035000 59851000 80784000 48481000 50668000 48382000 41539000 43382000 7 7 6 7 7 7 7 7 7 7 7 29410000 48923000 297350 51138000 30903000 25934000 26190000 41164000 40333000 37001000 41485000 27385000 45659000 2296700 51636000 29527000 28317000 27250000 40960000 40453000 36309000 39984000 6 6 4 6 6 6 6 6 6 6 6 11997000000 6540300000 5457200000 19851 1137 18238 101814;101815;101816;101817;101818;101819;101820;101821;101822;101823;101824;101825 123343;123344;123345;123346;123347;123348;123349;123350;123351;123352;123353;123354;123355;123356 123345 14 VAALQTAADAFYK Unmodified 1367.7085 0.70851601 2787 Q9H269;Q9H269-2 VPS16 Vacuolar protein sorting-associated protein 16 homolog yes no 0 0 0 0 By MS/MS 8 0 1 1 71.167 70.995 2 1.2101E-21 22185 20211116_3447_TMUAki_TMT10x_S_F8 167.3 120.41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19852 2787 18239 101826 123357 123357 1 VAASVLNPYVK Unmodified 1159.6601 0.66010926 1068 P48047 ATP5O ATP synthase subunit O, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 3 3 2 4 58.371 58.257 2;3 2.9807E-17 19530 20211116_3439_TMUAki_TMT10x_S_F1 186.78 147.76 5460600 9066200 0 9859900 8385100 9535700 6592300 8095900 8190800 7349600 8298700 5083800 8462700 417820 9997800 7990000 9702000 6830100 8281700 8266600 7208800 8002100 2 2 0 2 2 2 2 2 2 2 2 2690200 4502500 0 4789000 5717200 7015000 4232100 4375500 4421900 3809300 4301600 2504600 4202400 239970 4898600 5442900 6949800 4376300 4565000 4485900 3743700 4153300 1 1 0 1 1 1 1 1 1 1 1 2770400 4563700 0 5070900 2667900 2520800 2360300 3720400 3769000 3540300 3997100 2579100 4260300 177850 5099200 2547100 2752200 2453800 3716700 3780700 3465100 3848800 1 1 0 1 1 1 1 1 1 1 1 634330000 363090000 271240000 19853 1068 18240 101827;101828;101829;101830;101831;101832 123358;123359;123360;123361;123362;123363 123360 6 VACIGAWHPAR Unmodified 1236.6186 0.61859557 975 P39023;Q92901 RPL3;RPL3L 60S ribosomal protein L3;60S ribosomal protein L3-like yes no 0 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 40.216 40.091 3 2.9259E-11 11565 20211116_3429_TMUAki_TMT10x_P_F2 162.49 121.46 4259200 6508800 141960 8058500 9659800 7031200 5909500 5353000 5293300 4594500 6412700 3966800 6079200 559200 8096100 9176500 7188600 6171200 5504500 5451700 4518400 6151500 5 5 4 5 5 5 5 5 5 5 5 2672500 3948900 110160 5052800 8264400 5894100 4508000 3722800 3686400 3136400 4249100 2489200 3688900 402560 5089300 7836500 5903900 4743600 3877100 3806200 3087400 4081500 2 2 2 2 2 2 2 2 2 2 2 1586700 2559900 31800 3005700 1395500 1137100 1401500 1630100 1606800 1458000 2163700 1477600 2390300 156640 3006900 1340000 1284700 1427600 1627400 1645400 1431100 2070000 3 3 2 3 3 3 3 3 3 3 3 856780000 615190000 241590000 19854 975 18241 101833;101834;101835;101836;101837;101838 123364;123365;123366;123367;123368;123369 123365 6 VACITEQVLTLVNKR Unmodified 1742.9713 0.97128941 494 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 1 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 77.966 77.964 3 5.5222E-61 25275 20211116_3445_TMUAki_TMT10x_S_F6 303.36 284.9 29249000 48340000 486830 50795000 34298000 41035000 36086000 26309000 24591000 29372000 35248000 27237000 45115000 2949400 51500000 32961000 42075000 36155000 27584000 25899000 28560000 33673000 4 4 4 4 4 4 4 4 4 4 4 12340000 19184000 224820 20497000 14043000 22810000 14546000 11374000 10474000 11926000 14070000 11491000 17906000 1256400 20852000 13491000 22838000 14602000 12158000 10961000 11625000 13462000 2 2 2 2 2 2 2 2 2 2 2 16909000 29155000 262010 30298000 20256000 18225000 21540000 14935000 14118000 17446000 21178000 15746000 27209000 1692900 30648000 19470000 19237000 21552000 15426000 14938000 16935000 20211000 2 2 2 2 2 2 2 2 2 2 2 6316500000 2371900000 3944600000 19855 494 18242 101839;101840;101841;101842;101843 123370;123371;123372;123373;123374 123374 5 VACPQCNAEYLIVFPK Unmodified 1907.9274 0.92737569 3000 Q9NX47 MARCH5 E3 ubiquitin-protein ligase MARCH5 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 75.273 75.227 3 2.555E-07 23912 20211116_3447_TMUAki_TMT10x_S_F8 102.28 83.681 8264400 13484000 339550 13315000 8100100 12792000 9340700 7922500 6893900 7565600 9822500 7697500 12581000 999320 13587000 7818500 12955000 9334100 8290100 7224300 7403700 9384800 3 3 3 3 3 3 3 3 3 3 3 5826100 8824500 304920 9285200 5006200 9828200 6374600 5647300 4743300 5128200 6718900 5427000 8235900 755720 9448000 4853100 9884900 6344000 5937300 4967000 5029800 6420300 2 2 2 2 2 2 2 2 2 2 2 2438200 4659200 34631 4029600 3093800 2964200 2966100 2275200 2150600 2437400 3103600 2270500 4345100 243600 4139400 2965400 3069900 2990100 2352800 2257400 2373800 2964500 1 1 1 1 1 1 1 1 1 1 1 953460000 542230000 411230000 19856 3000 18243 101844;101845 123375;123376;123377 123377 3 VADEMDVMLGQEVGYSIR 2 Oxidation (M) 2042.9289 0.92889183 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 2 0 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 60.122 59.843 3 3.019E-15 18102 20211116_3428_TMUAki_TMT10x_P_F1 126.91 117.87 4751200 8006200 44318 6901300 6382600 11143000 5659900 8226700 7531100 7426700 7348100 4423800 7466500 419170 7181900 6101900 11025000 5836800 8487600 7573200 7286300 7094100 3 3 2 3 3 3 3 3 3 3 3 3413600 5880700 44318 4951400 5066800 9717900 4439900 6180300 5503000 5760600 5418200 3178700 5483800 347460 5188100 4845200 9526400 4569300 6449700 5548900 5643300 5229400 2 2 2 2 2 2 2 2 2 2 2 1337600 2125500 0 1949900 1315800 1425400 1219900 2046400 2028000 1666200 1929900 1245100 1982700 71701 1993800 1256700 1498400 1267400 2037900 2024300 1642900 1864700 1 1 0 1 1 1 1 1 1 1 1 901710000 624260000 277450000 19857 196 18244 101846;101847;101848 123378;123379;123380;123381 123378 153;154 4 VADGLPLAASMQEDEQSGR Oxidation (M) 1988.9109 0.91093358 331 O75396 SEC22B Vesicle-trafficking protein SEC22b yes yes 0 0 1 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 49.54 49.466 3 1.1298E-10 14122 20211116_3440_TMUAki_TMT10x_S_F2 115.26 94.88 2170300 3819600 47359 4266700 5500300 5824600 3476100 3192300 3745000 2970600 3425200 2021100 3565800 270710 4344500 5225900 5778500 3640100 3372000 3786800 2910400 3314100 1 1 1 1 1 1 1 1 1 1 1 2170300 3819600 47359 4266700 5500300 5824600 3476100 3192300 3745000 2970600 3425200 2021100 3565800 270710 4344500 5225900 5778500 3640100 3372000 3786800 2910400 3314100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 171310000 171310000 0 19858 331 18245 101849;101850 123382;123383 123383 244 2 VADGMVFGALLPCEECSGQLVFK Oxidation (M) 2542.1906 0.1906026 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 1 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 79.081 79.078 3 2.1173E-11 25358 20211116_3434_TMUAki_TMT10x_P_F6 113.99 101.55 7727900 11929000 45291 11245000 8879900 12950000 9959900 8952800 8158900 9986400 10380000 7195500 11128000 664080 11545000 8542100 12997000 9990500 9335200 8457900 9710700 9944000 3 3 1 3 3 3 3 3 3 3 3 4757800 7416600 45291 6872000 4856000 9152900 5366900 5415300 4917400 5987500 6185800 4430200 6918500 427640 7083100 4671100 9099700 5403300 5711700 5067300 5824100 5928000 2 2 1 2 2 2 2 2 2 2 2 2970200 4512400 0 4372600 4023900 3796700 4593000 3537400 3241500 3998900 4193700 2765300 4210000 236440 4462000 3871000 3897500 4587200 3623500 3390600 3886600 4016000 1 1 0 1 1 1 1 1 1 1 1 4767100000 2662000000 2105100000 19859 586 18246 101851;101852;101853 123384;123385;123386 123385 560 3 VADGMVFGALLPCEECSGQLVFK Unmodified 2526.1957 0.19568798 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.8 0.748 2 2 1 3 2 80.25 80.263 3 1.2806E-15 28362 20211116_3446_TMUAki_TMT10x_S_F7 132.13 121.34 16176000 26200000 240650 26996000 19495000 17587000 20439000 7933700 6918200 9637700 17227000 15062000 24451000 1477100 27343000 18722000 18280000 20264000 8604700 7995500 9342500 16299000 6 6 3 6 6 6 6 6 6 6 6 6294300 10708000 195450 10564000 6153100 9567900 8164700 3935700 3357200 4396100 6863800 5861300 9991600 600400 10772000 5955700 9682000 8027800 4299600 3750100 4274500 6512700 3 3 2 3 3 3 3 3 3 3 3 9881400 15492000 45200 16432000 13342000 8018800 12275000 3998000 3561000 5241600 10363000 9200600 14459000 876730 16571000 12766000 8597600 12237000 4305100 4245400 5068000 9786200 3 3 1 3 3 3 3 3 3 3 3 5601100000 2405600000 3195500000 19860 586 18246 101854;101855;101856;101857;101858 123387;123388;123389;123390;123391;123392 123391 6 VADIGLAAWGR Unmodified 1127.6087 0.60874239 786 P23526 AHCY Adenosylhomocysteinase yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 65.316 65.485 2 1.3782E-21 21564 20211116_3435_TMUAki_TMT10x_P_F7 211.85 182.05 34645000 57625000 91866 61067000 39827000 35225000 37674000 19491000 15894000 21786000 39537000 32257000 53783000 2832200 61669000 38126000 37125000 37652000 20680000 17961000 21183000 37408000 3 3 1 3 3 3 3 3 3 3 3 11426000 18042000 0 19046000 17760000 19314000 17566000 6043100 4702000 6504400 12312000 10638000 16839000 905050 19363000 17016000 19361000 17430000 6827800 5616400 6333500 11642000 1 1 0 1 1 1 1 1 1 1 1 23219000 39583000 91866 42021000 22066000 15911000 20108000 13448000 11192000 15282000 27225000 21620000 36945000 1927200 42306000 21110000 17764000 20222000 13852000 12345000 14850000 25767000 2 2 1 2 2 2 2 2 2 2 2 4388800000 1567600000 2821200000 19861 786 18247 101859;101860;101861;101862 123393;123394;123395;123396 123393 4 VADLTEQYNEQYGAVR Unmodified 1854.8748 0.87480607 2707 Q9BWF3 RBM4 RNA-binding protein 4 no no 0 0 0 0 By MS/MS By MS/MS 4.4 0.49 3 2 2 3 55.138 55.121 2;3 1.6494E-156 16918 20211116_3442_TMUAki_TMT10x_S_F4 384.15 360.4 1886200 3343000 94900 3838300 1854100 1669200 1827400 2342300 2598300 2319800 3017200 1756900 3121200 244370 3848300 1782900 1849400 1878800 2346800 2624500 2266500 2897600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1886200 3343000 94900 3838300 1854100 1669200 1827400 2342300 2598300 2319800 3017200 1756900 3121200 244370 3848300 1782900 1849400 1878800 2346800 2624500 2266500 2897600 1 1 1 1 1 1 1 1 1 1 1 404140000 0 404140000 19862 2707 18248 101863;101864;101865;101866;101867 123397;123398;123399;123400;123401 123400 5 VADMALHYANK Oxidation (M) 1247.5969 0.59685707 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 1 0 By MS/MS By MS/MS 5.25 0.433 3 1 2 2 39.187 39.193 3 0.00082716 9468 20211116_3444_TMUAki_TMT10x_S_F5 79.201 64.325 784790 1369600 16009 1302300 2118500 2402000 1126500 1251400 1489300 1183100 1265100 730830 1277700 98663 1349700 2007300 2353300 1205800 1328400 1491300 1158300 1227300 1 1 1 1 1 1 1 1 1 1 1 784790 1369600 16009 1302300 2118500 2402000 1126500 1251400 1489300 1183100 1265100 730830 1277700 98663 1349700 2007300 2353300 1205800 1328400 1491300 1158300 1227300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 74084000 74084000 0 19863 1146 18249 101868;101869;101870;101871 123402;123403;123404;123405 123405 1518 4 VADMALHYANK Unmodified 1231.6019 0.60194245 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 48.953 49.354 3 5.6149E-07 15589 20211116_3446_TMUAki_TMT10x_S_F7 132.76 89.136 7486700 11700000 0 13251000 12334000 8922500 8617600 5414000 4342000 5175000 8320900 6970700 10923000 666510 13344000 11731000 9277800 8803100 5674500 4745500 5064100 7903700 2 2 0 2 2 2 2 2 2 2 2 4044100 6335300 0 7215800 9199300 6678700 5086900 3151500 2377800 2962400 4503800 3765400 5914800 396590 7291100 8716600 6757700 5291000 3376500 2613000 2901000 4278800 1 1 0 1 1 1 1 1 1 1 1 3442600 5364300 0 6035100 3134300 2243800 3530700 2262600 1964100 2212700 3817100 3205300 5007900 269920 6052700 3014600 2520100 3512100 2298000 2132500 2163100 3624900 1 1 0 1 1 1 1 1 1 1 1 1328500000 1070700000 257800000 19864 1146 18249 101872;101873;101874 123406;123407 123407 2 VADPDHDHTGFLTEYVATR Unmodified 2142.997 0.99704647 845 P28482;P28482-2 MAPK1 Mitogen-activated protein kinase 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.4 0.49 3 2 2 3 49.845 49.81 3;4 2.5024E-31 14251 20211116_3431_TMUAki_TMT10x_P_F4 180.64 179.95 4448700 7399200 60501 8023200 6084800 6248500 4486800 6476500 6538800 5953000 6746600 4142100 6906600 383710 8114400 5793700 6480200 4698200 6557700 6569600 5835600 6501800 3 3 2 3 3 3 3 3 3 3 3 1193700 2014900 55915 2116700 2548400 3315900 1820100 1942400 2004200 1536200 1931100 1111800 1880500 170050 2170200 2428600 3273200 1890000 2032100 2028300 1517100 1865200 1 1 1 1 1 1 1 1 1 1 1 3255100 5384300 4585.2 5906500 3536300 2932700 2666700 4534000 4534600 4416800 4815500 3030300 5026100 213660 5944200 3365000 3207000 2808200 4525600 4541400 4318500 4636600 2 2 1 2 2 2 2 2 2 2 2 2395000000 1565200000 829790000 19865 845 18250 101875;101876;101877;101878;101879 123408;123409;123410;123411 123408 4 VADPTPFHIQAEVTMK Oxidation (M) 1798.8924 0.89237039 691 P16152;P16152-2 CBR1 Carbonyl reductase [NADPH] 1 yes no 0 0 1 0 By MS/MS 6 0 1 1 54.289 54.394 3 0.049377 15613 20211116_3445_TMUAki_TMT10x_S_F6 40.856 27.655 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19866 691 18251 101880 123412 123412 777 1 VADPVVTFCETVVETSSLK Unmodified 2080.0398 0.039822489 1757 Q15029;Q15029-2;Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 By MS/MS By MS/MS 7 0.707 1 2 1 2 2 79.562 79.573 3 1.4731E-31 25541 20211116_3434_TMUAki_TMT10x_P_F6 185.63 169.74 10859000 17777000 178050 17213000 11971000 18156000 13504000 10333000 10534000 12182000 13501000 10111000 16586000 985390 17614000 11521000 18262000 13526000 10956000 10951000 11821000 12933000 3 3 2 3 3 3 3 3 3 3 3 7523200 12199000 120500 11582000 6977700 14162000 8834100 6883100 7030800 8265700 9269200 7005000 11381000 632000 11898000 6738200 14104000 8807900 7407000 7311000 8015800 8872300 2 2 1 2 2 2 2 2 2 2 2 3335700 5578200 57545 5630500 4993100 3994500 4669900 3449800 3502800 3916000 4232300 3106300 5205200 353400 5715900 4783000 4158000 4717600 3549000 3640500 3805300 4060200 1 1 1 1 1 1 1 1 1 1 1 4134300000 2131400000 2002900000 19867 1757 18252 101881;101882;101883;101884 123413;123414;123415 123413 3 VAEAALQIFK Unmodified 1088.623 0.62299547 2945 Q9NTI5;Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 0 0 0 0 By MS/MS 8 0 1 1 74.356 74.221 2 0.00010812 23509 20211116_3447_TMUAki_TMT10x_S_F8 121.73 73.864 2850200 4863800 130010 5112000 2976400 2936300 3430700 2488500 2662200 2890400 3411400 2654800 4539400 359230 5165000 2873200 3115400 3432400 2564800 2768600 2806400 3267700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2850200 4863800 130010 5112000 2976400 2936300 3430700 2488500 2662200 2890400 3411400 2654800 4539400 359230 5165000 2873200 3115400 3432400 2564800 2768600 2806400 3267700 1 1 1 1 1 1 1 1 1 1 1 163750000 0 163750000 19868 2945 18253 101885 123416 123416 1 VAEEHAPSIVFIDEIDAIGTK Unmodified 2253.1529 0.15287841 1336 P62191;P62191-2 PSMC1 26S protease regulatory subunit 4 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 77.527 77.486 3 2.1756E-14 25459 20211116_3440_TMUAki_TMT10x_S_F2 136.04 120.28 5645300 10794000 0 8799400 7287900 8917500 7419000 6189400 5940600 6386300 7427400 5255800 10064000 427240 9119400 6987100 9016000 7472800 6436500 6161000 6229000 7118900 2 2 0 2 2 2 2 2 2 2 2 2272600 4527600 0 3367800 2482300 5052600 3295600 2827500 2745900 3203900 2941600 2115900 4220400 175640 3542900 2399600 4993300 3283300 2998400 2824500 3113600 2831600 1 1 0 1 1 1 1 1 1 1 1 3372700 6266100 0 5431500 4805500 3864900 4123400 3361900 3194600 3182400 4485900 3139900 5843900 251600 5576600 4587500 4022600 4189500 3438200 3336500 3115500 4287400 1 1 0 1 1 1 1 1 1 1 1 2752800000 2215200000 537630000 19869 1336 18254 101886;101887 123417 123417 1 VAEELALEQAKK Unmodified 1327.7347 0.73473076 3003 Q9NX63 CHCHD3 MICOS complex subunit MIC19 yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 51.391 51.498 3 3.5736E-07 15439 20211116_3442_TMUAki_TMT10x_S_F4 124.3 94.495 7680300 12644000 152120 13700000 7772700 6744500 7460100 9154100 8761200 7980100 10039000 7152300 11802000 779810 13797000 7454200 7354000 7623700 9150500 8901400 7842200 9644300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7680300 12644000 152120 13700000 7772700 6744500 7460100 9154100 8761200 7980100 10039000 7152300 11802000 779810 13797000 7454200 7354000 7623700 9150500 8901400 7842200 9644300 2 2 2 2 2 2 2 2 2 2 2 535370000 0 535370000 19870 3003 18255 101888;101889 123418;123419;123420 123418 3 VAEFHTELER Unmodified 1229.6041 0.60405094 1076 P48556 PSMD8 26S proteasome non-ATPase regulatory subunit 8 yes yes 0 0 0 0 By MS/MS By MS/MS 2.6 0.49 2 3 2 3 38.091 37.997 2;3 3.0219E-14 12220 20211116_3441_TMUAki_TMT10x_S_F3 219.03 163.57 1993400 2846600 1879 3299100 2832400 2596700 2148400 2077800 2313000 1879800 2520600 1855900 2657900 153800 3323200 2697100 2677000 2220100 2132800 2353300 1844000 2425100 3 3 1 3 3 3 3 3 3 3 3 1034200 1341600 0 1608600 2031700 1801900 1135900 1072100 1204500 963350 1303100 962860 1252900 83983 1625100 1924500 1807300 1201100 1123600 1225900 945340 1254000 1 1 0 1 1 1 1 1 1 1 1 959200 1505000 1879 1690500 800750 794830 1012500 1005700 1108500 916430 1217500 893050 1405000 69819 1698100 772630 869700 1019000 1009200 1127400 898710 1171100 2 2 1 2 2 2 2 2 2 2 2 364840000 161480000 203360000 19871 1076 18256 101890;101891;101892;101893;101894 123421;123422;123423;123424 123423 4 VAEIEHAEK Unmodified 1024.5189 0.51892433 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 34.336 34.105 3 0.0008247 10661 20211116_3441_TMUAki_TMT10x_S_F3 88.056 49.281 1616900 2598300 19449 2757100 2041500 2173000 1728100 1382200 1770600 1434300 2051000 1505600 2425100 158120 2792700 1950700 2231900 1770600 1446800 1809400 1398700 1969800 2 2 2 2 2 2 2 2 2 2 2 798690 1303200 293.21 1325900 1405100 1492400 845640 681710 859500 681730 1078400 743660 1216100 74984 1353500 1333300 1491900 887450 734030 881550 665820 1033500 1 1 1 1 1 1 1 1 1 1 1 818160 1295100 19156 1431200 636310 680570 882450 700470 911100 752590 972640 761930 1209000 83137 1439200 617470 740060 883120 712750 927820 732870 936370 1 1 1 1 1 1 1 1 1 1 1 86286000 43336000 42951000 19872 1429 18257 101895;101896 123425;123426 123426 2 VAEITELILK Unmodified 1127.6802 0.680176 1526 Q06265;Q06265-2;Q06265-3;Q06265-4 EXOSC9 Exosome complex component RRP45 yes no 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 79.153 79.152 2 8.8346E-09 25374 20211116_3434_TMUAki_TMT10x_P_F6 140.75 83.164 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19873 1526 18258 101897;101898 123427;123428 123428 2 VAEKLDEIYVAGLVAHSDLDER Unmodified 2441.2438 0.24381868 271;272 O60506;O60506-2;O60506-3;O60506-4 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 1 By MS/MS By MS/MS 3.64 1.55 1 2 2 3 1 2 5 6 76.521 76.473 3;4 1.573E-44 27846 20211116_3441_TMUAki_TMT10x_S_F3 206.09 172.79 86718000 148460000 1095700 127170000 99991000 145240000 112200000 107600000 105980000 107490000 113170000 80748000 138450000 6497300 131510000 96220000 146000000 112980000 111300000 108340000 104980000 108950000 18 18 9 18 18 18 18 18 18 18 18 47844000 80667000 652510 67973000 48841000 100360000 61220000 60474000 59382000 57471000 60238000 44550000 75224000 3244900 70724000 47160000 99344000 61394000 63409000 60522000 56253000 58083000 10 10 5 10 10 10 10 10 10 10 10 38874000 67792000 443170 59202000 51150000 44886000 50982000 47129000 46595000 50015000 52936000 36198000 63225000 3252400 60788000 49060000 46660000 51586000 47891000 47819000 48728000 50869000 8 8 4 8 8 8 8 8 8 8 8 29037000000 15713000000 13324000000 19874 271;272 18259 101899;101900;101901;101902;101903;101904;101905;101906;101907;101908;101909 123429;123430;123431;123432;123433;123434;123435;123436;123437;123438;123439;123440;123441;123442;123443;123444;123445;123446;123447 123440 19 VAELLLLHGAEPNCADPATLTRPVHDAAR Unmodified 3106.5982 0.59820106 1021 P42771;P42771-4;P42771-2;P42772 CDKN2A;CDKN2B Cyclin-dependent kinase inhibitor 2A;Cyclin-dependent kinase 4 inhibitor B yes no 0 0 0 1 By MS/MS By MS/MS 6.33 0.943 1 2 2 1 58.972 59.449 5 2.436E-25 19656 20211116_3446_TMUAki_TMT10x_S_F7 153.82 144.74 13409000 23208000 698790 23076000 18917000 23475000 16996000 17082000 14599000 14360000 16927000 12490000 21655000 1799900 23557000 18130000 23746000 17266000 17609000 15040000 14137000 16256000 4 4 3 4 4 4 4 4 4 4 4 8486500 14902000 612200 14821000 12871000 18915000 12739000 11477000 9552800 9418100 10878000 7906300 13904000 1335500 15187000 12375000 18850000 12830000 11983000 9904800 9283000 10453000 2 2 2 2 2 2 2 2 2 2 2 4922400 8306900 86589 8254600 6045800 4559600 4256700 5605300 5046300 4941700 6048100 4583600 7751000 464400 8369500 5754700 4896400 4435800 5626500 5134800 4853700 5803400 2 2 1 2 2 2 2 2 2 2 2 3521500000 2096900000 1424600000 19875 1021 18260 101910;101911;101912 123448;123449;123450;123451 123450 4 VAELSSDDFHLDR Unmodified 1502.7001 0.70013617 2375 Q92896;Q92896-2;Q92896-3 GLG1 Golgi apparatus protein 1 yes no 0 0 0 0 By MS/MS 3 0 1 1 52.024 51.657 3 2.4211E-06 17841 20211116_3441_TMUAki_TMT10x_S_F3 109.84 93.701 1069700 1996700 47034 2047600 1070400 1001400 978970 1667600 1492600 1627100 1579100 996350 1863400 132530 2069700 1026900 1099600 1013700 1660600 1499100 1590800 1520600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1069700 1996700 47034 2047600 1070400 1001400 978970 1667600 1492600 1627100 1579100 996350 1863400 132530 2069700 1026900 1099600 1013700 1660600 1499100 1590800 1520600 1 1 1 1 1 1 1 1 1 1 1 123300000 0 123300000 19876 2375 18261 101913 123452 123452 1 VAEQTPLSALYLASLIK Unmodified 1816.0346 0.034601177 880 P30837 ALDH1B1 Aldehyde dehydrogenase X, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3.75 2.52 1 4 4 3 7 5 80.88 80.861 2;3 9.3942E-53 26828 20211116_3440_TMUAki_TMT10x_S_F2 267.41 239.4 61386000 99104000 347020 96757000 52474000 83856000 71847000 48421000 53914000 56212000 67636000 57158000 92466000 4248800 98681000 50812000 85426000 71309000 51253000 56120000 54578000 64821000 15 15 6 15 15 15 15 15 15 15 15 35133000 55106000 289550 55404000 27395000 52542000 35373000 27845000 30486000 31198000 37898000 32714000 51421000 2155400 56458000 26483000 53148000 35312000 29658000 31492000 30331000 36329000 9 9 5 9 9 9 9 9 9 9 9 26253000 43998000 57470 41352000 25079000 31314000 36474000 20577000 23428000 25014000 29738000 24444000 41045000 2093400 42223000 24329000 32279000 35998000 21596000 24629000 24247000 28492000 6 6 1 6 6 6 6 6 6 6 6 17220000000 11488000000 5732300000 19877 880 18262 101914;101915;101916;101917;101918;101919;101920;101921;101922;101923;101924;101925 123453;123454;123455;123456;123457;123458;123459;123460;123461;123462;123463;123464;123465;123466;123467 123463 15 VAEQTPLTALYVANLIK Unmodified 1843.0455 0.045500215 500 P05091;P05091-2 ALDH2 Aldehyde dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 2.67 2.43 4 6 2 6 6 69.035 69.003 2;3 7.3014E-47 26395 20211116_3440_TMUAki_TMT10x_S_F2 243.4 195.46 43034000 71816000 213960 64610000 48642000 59889000 54824000 36660000 35285000 38967000 50729000 40068000 66985000 3429400 66351000 46781000 60780000 54682000 38515000 37299000 37962000 48458000 13 13 4 13 13 13 13 13 13 13 13 22939000 35269000 121980 32834000 20302000 36465000 24987000 19187000 18494000 20509000 25685000 21358000 32900000 1825300 33722000 19582000 36535000 24900000 20420000 19354000 19976000 24555000 6 6 1 6 6 6 6 6 6 6 6 20095000 36547000 91972 31776000 28339000 23425000 29837000 17473000 16790000 18458000 25043000 18709000 34085000 1604100 32628000 27199000 24245000 29782000 18095000 17945000 17986000 23903000 7 7 3 7 7 7 7 7 7 7 7 14596000000 7704500000 6891900000 19878 500 18263 101926;101927;101928;101929;101930;101931;101932;101933;101934;101935;101936;101937 123468;123469;123470;123471;123472;123473;123474;123475;123476;123477;123478;123479;123480 123479 13 VAFDPEQKPLHGVLK Unmodified 1676.925 0.92499115 1724 Q14684;Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 0 1 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 52.066 52.495 4 6.1579E-05 16306 20211116_3435_TMUAki_TMT10x_P_F7 93.909 76.97 20063000 36246000 399250 34935000 44550000 52180000 31962000 29575000 28927000 26560000 31401000 18683000 33816000 2322300 35990000 42421000 51585000 32985000 31120000 29649000 26064000 30215000 4 4 3 4 4 4 4 4 4 4 4 16702000 29585000 255910 27665000 41170000 48725000 29257000 24221000 23249000 21702000 25387000 15552000 27599000 1909700 28673000 39188000 47788000 30113000 25787000 23990000 21299000 24424000 3 3 2 3 3 3 3 3 3 3 3 3361600 6660800 143340 7270300 3380600 3454300 2705600 5354500 5678700 4858100 6014200 3131100 6217500 412560 7316800 3233200 3797100 2871700 5333300 5658900 4765100 5791300 1 1 1 1 1 1 1 1 1 1 1 2980700000 2640500000 340200000 19879 1724 18264 101938;101939;101940 123481;123482;123483;123484 123482 4 VAFERGEEPGK Unmodified 1217.6041 0.60405094 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 1 By MS/MS By MS/MS 4.25 0.829 1 1 2 2 2 34.747 34.799 3 7.4786E-09 8354 20211116_3431_TMUAki_TMT10x_P_F4 156.69 123.28 2919200 4441200 34740 4665800 6407100 5445200 3702800 3066500 2992900 2562200 3766000 2718300 4145000 318450 4755700 6077200 5445700 3875300 3222800 3103200 2523200 3608900 2 2 1 2 2 2 2 2 2 2 2 2919200 4441200 34740 4665800 6407100 5445200 3702800 3066500 2992900 2562200 3766000 2718300 4145000 318450 4755700 6077200 5445700 3875300 3222800 3103200 2523200 3608900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 230180000 209610000 20572000 19880 1546 18265 101941;101942;101943;101944 123485;123486;123487 123485 3 VAFGSLAANGPTTLVDK Unmodified 1659.8832 0.88318591 3162 Q9UKX7;Q9UKX7-2 NUP50 Nuclear pore complex protein Nup50 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 69.5 69.467 3 4.4666E-11 22081 20211116_3436_TMUAki_TMT10x_P_F8 130.06 97.782 12553000 21387000 295480 20186000 14690000 17464000 15065000 14224000 14778000 15264000 16997000 11690000 19952000 1346000 20638000 14113000 17886000 15253000 14657000 15125000 14865000 16327000 3 3 3 3 3 3 3 3 3 3 3 4227500 7285800 8207 6461000 4485600 8225600 4892200 4420300 4902700 4822600 5307600 3936300 6795400 361750 6676000 4311700 8185300 4941400 4698400 5001600 4693400 5107500 1 1 1 1 1 1 1 1 1 1 1 8325400 14101000 287270 13725000 10205000 9238500 10173000 9804100 9875400 10442000 11689000 7753900 13156000 984290 13962000 9801500 9701100 10312000 9958700 10124000 10172000 11220000 2 2 2 2 2 2 2 2 2 2 2 1159700000 686200000 473510000 19881 3162 18266 101945;101946 123488;123489;123490 123488 3 VAFHPARPFLLVASQR Unmodified 1808.021 0.020957219 1679 Q14137;Q14137-2 BOP1 Ribosome biogenesis protein BOP1 yes no 0 0 0 1 By matching By MS/MS 7.67 0.471 1 2 2 1 51.297 51.519 4 1.6753E-05 14293 20211116_3447_TMUAki_TMT10x_S_F8 97.291 81.35 2584800 4192300 12530 4304800 2704800 1758900 1967500 3960200 3470600 3206600 3551900 2406800 3912300 227660 4345600 2575700 1998400 2080800 3892800 3467900 3162800 3423900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2584800 4192300 12530 4304800 2704800 1758900 1967500 3960200 3470600 3206600 3551900 2406800 3912300 227660 4345600 2575700 1998400 2080800 3892800 3467900 3162800 3423900 2 2 2 2 2 2 2 2 2 2 2 644860000 396320000 248540000 19882 1679 18267 101947;101948;101949 123491;123492 123491 2 VAFRDCEGR Unmodified 1108.5084 0.50837642 1859 Q16658 FSCN1 Fascin yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 29.914 29.763 3 0.0054924 6275 20211116_3431_TMUAki_TMT10x_P_F4 69.346 49.584 1525800 2396500 0 2150600 1889600 2130300 1644800 1365300 1488600 1304200 1752700 1420600 2235300 121170 2211000 1805000 2154300 1676400 1424900 1530600 1276300 1682600 2 2 0 2 2 2 2 2 2 2 2 821700 1261300 0 1129400 1054800 1485300 932930 742570 833070 728780 969110 765030 1176400 64006 1166800 1007800 1474500 949590 792060 856700 712330 930650 1 1 0 1 1 1 1 1 1 1 1 704130 1135200 0 1021200 834860 645040 711870 622700 655530 575440 783580 655590 1058900 57159 1044200 797210 679830 726770 632830 673900 563950 751930 1 1 0 1 1 1 1 1 1 1 1 61649000 45940000 15709000 19883 1859 18268 101950;101951;101952 123493;123494 123493 2 VAFSVAR Unmodified 748.42317 0.42317345 975 P39023 RPL3 60S ribosomal protein L3 yes yes 0 0 0 0 By MS/MS By MS/MS 5.43 2.87 2 1 2 2 3 4 39.038 39.287 2 0.0014539 9728 20211116_3436_TMUAki_TMT10x_P_F8 146.01 44.285 12939000 21726000 13921 20485000 19932000 20701000 14584000 15246000 14645000 12435000 16761000 12047000 20268000 1094000 20989000 18972000 20953000 15075000 15692000 14971000 12260000 16103000 10 10 3 10 10 10 10 10 10 10 10 7309000 12014000 1937.6 11098000 14142000 16305000 8822000 8987900 8642600 6956100 9420300 6805000 11207000 647610 11464000 13423000 16125000 9221200 9446700 8827800 6877400 9063300 5 5 1 5 5 5 5 5 5 5 5 5629700 9711700 11983 9387500 5789600 4396200 5762300 6257800 6002500 5478800 7340800 5241600 9060800 446380 9525100 5549200 4828200 5853900 6245300 6143500 5382900 7040000 5 5 2 5 5 5 5 5 5 5 5 555390000 370580000 184810000 19884 975 18269 101953;101954;101955;101956;101957;101958;101959 123495;123496;123497;123498;123499;123500;123501;123502 123499 8 VAFTGSTEIGR Unmodified 1136.5826 0.58258722 500 P05091;P05091-2 ALDH2 Aldehyde dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 44.149 44.315 2 3.3673E-07 12383 20211116_3433_TMUAki_TMT10x_P_F5 114.5 95.714 1261400 2035100 19005 2560600 1162600 946520 1051200 1383300 1458500 1320300 1596600 1174600 1901000 120900 2551000 1113100 1073600 1084700 1382500 1470800 1292000 1535900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1261400 2035100 19005 2560600 1162600 946520 1051200 1383300 1458500 1320300 1596600 1174600 1901000 120900 2551000 1113100 1073600 1084700 1382500 1470800 1292000 1535900 1 1 1 1 1 1 1 1 1 1 1 168950000 0 168950000 19885 500 18270 101960;101961 123503;123504 123503 2 VAFTGSTEVGHLIQK Unmodified 1585.8464 0.84640648 880 P30837 ALDH1B1 Aldehyde dehydrogenase X, mitochondrial yes yes 0 0 0 0 By matching By MS/MS 7.5 0.5 1 1 1 1 55.71 56.048 3 0.0038104 16065 20211116_3447_TMUAki_TMT10x_S_F8 60.178 40.854 3248600 6284500 0 5951300 2962400 3481200 3026900 4699500 4762300 4466700 4694900 3024800 5862800 263510 6058000 2842000 3726200 3120700 4709600 4766500 4372000 4531100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3248600 6284500 0 5951300 2962400 3481200 3026900 4699500 4762300 4466700 4694900 3024800 5862800 263510 6058000 2842000 3726200 3120700 4709600 4766500 4372000 4531100 1 1 0 1 1 1 1 1 1 1 1 906870000 386020000 520860000 19886 880 18271 101962;101963 123505 123505 1 VAFTLLEK Unmodified 919.53787 0.53786886 192 O15498;O15498-2 YKT6 Synaptobrevin homolog YKT6 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 68.923 69.07 2 0.00046208 21929 20211116_3436_TMUAki_TMT10x_P_F8 155.75 94.966 30411000 52206000 270760 52140000 44049000 51207000 38688000 36138000 33598000 35241000 42867000 28317000 48713000 2821000 53182000 42109000 51885000 39365000 37477000 34731000 34455000 41066000 4 4 1 4 4 4 4 4 4 4 4 14762000 25165000 270760 25091000 23147000 35373000 20182000 19512000 18724000 18907000 21981000 13746000 23482000 1516500 25756000 22131000 35045000 20581000 20621000 19228000 18491000 21104000 2 2 1 2 2 2 2 2 2 2 2 15650000 27040000 0 27048000 20903000 15833000 18506000 16627000 14874000 16334000 20886000 14571000 25231000 1304600 27426000 19978000 16839000 18784000 16856000 15504000 15964000 19962000 2 2 0 2 2 2 2 2 2 2 2 1150400000 611920000 538500000 19887 192 18272 101964;101965;101966 123506;123507;123508;123509 123507 4 VAGGAAPSKPASAK Unmodified 1210.667 0.66698555 1740 Q14978;Q14978-2;Q14978-3 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 31.876 31.891 3 4.6736E-09 8694 20211116_3439_TMUAki_TMT10x_S_F1 121.79 101.58 633950 1097700 878.04 868890 667040 824700 728770 401150 462710 448810 730440 590240 1023400 49370 901910 640900 833350 727760 430670 491870 436370 696340 2 2 1 2 2 2 2 2 2 2 2 265560 446030 0 345890 342330 468290 307830 175530 181850 186950 275880 247230 415820 18622 361770 327090 462930 310150 193580 193850 182110 263220 1 1 0 1 1 1 1 1 1 1 1 368390 651710 878.04 523000 324710 356410 420940 225620 280860 261870 454560 343010 607630 30748 540140 313820 370420 417610 237080 298020 254260 433120 1 1 1 1 1 1 1 1 1 1 1 44356000 23865000 20491000 19888 1740 18273 101967;101968 123510;123511 123511 2 VAGHPLAQNER Unmodified 1190.6156 0.61561868 269 O60493;O60493-2;O60493-4 SNX3 Sorting nexin-3 yes no 0 0 0 0 By MS/MS By MS/MS 4 1 1 1 1 1 26.431 26.247 3 0.0026524 7709 20211116_3441_TMUAki_TMT10x_S_F3 68.536 49.059 112640 184470 2968.1 164420 126680 165480 120830 97339 102890 92745 154220 104900 172060 12302 169170 121500 166980 122320 102270 107280 90769 147180 2 2 2 2 2 2 2 2 2 2 2 56449 103230 607.55 82286 66758 99010 59138 59275 55888 50864 82486 52564 96245 5390.6 85674 63856 98940 60284 62020 57942 50023 78748 1 1 1 1 1 1 1 1 1 1 1 56194 81242 2360.5 82137 59919 66471 61696 38064 46999 41881 71735 52340 75811 6910.9 83496 57641 68044 62033 40248 49334 40746 68434 1 1 1 1 1 1 1 1 1 1 1 5470700 2944300 2526300 19889 269 18274 101969;101970 123512;123513 123513 2 VAGHPNIVINNAAGNFISPTER Unmodified 2290.1818 0.18182755 1860 Q16698;Q16698-2 DECR1 2,4-dienoyl-CoA reductase, mitochondrial yes no 0 0 0 0 By matching By MS/MS 8 0 2 1 1 53.278 53.289 3 3.9393E-14 14980 20211116_3447_TMUAki_TMT10x_S_F8 123.19 112.71 640980 1292100 3943.2 1359400 669060 827680 626960 768450 969330 950140 924710 596850 1205900 57210 1374100 640710 874650 648750 789740 969560 920470 893420 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 640980 1292100 3943.2 1359400 669060 827680 626960 768450 969330 950140 924710 596850 1205900 57210 1374100 640710 874650 648750 789740 969560 920470 893420 1 1 1 1 1 1 1 1 1 1 1 527650000 254590000 273060000 19890 1860 18275 101971;101972 123514 123514 1 VAGHSLGYGFVNYVTAK Unmodified 1781.9101 0.91006937 1825 Q15717;Q15717-2 ELAVL1 ELAV-like protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 60.961 60.689 3 4.7392E-22 18700 20211116_3431_TMUAki_TMT10x_P_F4 152.07 139.19 29145000 50068000 331570 48642000 34275000 45185000 33978000 32845000 32756000 34325000 36326000 27139000 46713000 2797200 49672000 32877000 45968000 34443000 34062000 33504000 33462000 34932000 7 7 7 7 7 7 7 7 7 7 7 15083000 25505000 135190 23911000 18683000 30876000 18919000 15857000 16558000 17229000 17826000 14045000 23793000 1426900 24610000 17928000 30688000 19105000 16921000 16994000 16770000 17157000 3 3 3 3 3 3 3 3 3 3 3 14062000 24563000 196370 24731000 15593000 14309000 15059000 16988000 16197000 17095000 18501000 13095000 22920000 1370300 25062000 14949000 15280000 15338000 17141000 16510000 16692000 17775000 4 4 4 4 4 4 4 4 4 4 4 7017000000 4414400000 2602600000 19891 1825 18276 101973;101974;101975;101976;101977 123515;123516;123517;123518;123519;123520;123521;123522 123518 8 VAGIESHSELQISR Unmodified 1524.7896 0.78961988 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.75 0.661 1 3 11 1 2 14 35.991 36.04 3 3.1844E-51 9316 20211116_3444_TMUAki_TMT10x_S_F5 282.12 249.39 14825000 25381000 328400 28703000 23047000 19851000 16683000 19714000 19382000 16806000 21718000 13805000 23695000 1595200 28915000 21955000 20766000 17339000 19963000 19683000 16534000 20879000 19 19 15 19 19 19 19 19 19 19 19 4793100 7928100 115880 8705900 11809000 10551000 6218000 6791200 6373500 5358000 6558500 4463600 7400700 596770 8854100 11189000 10550000 6604400 7051600 6483700 5291900 6321100 4 4 3 4 4 4 4 4 4 4 4 10032000 17453000 212530 19997000 11238000 9300200 10465000 12922000 13009000 11448000 15160000 9341800 16295000 998450 20061000 10766000 10216000 10734000 12912000 13199000 11242000 14557000 15 15 12 15 15 15 15 15 15 15 15 2885300000 1338100000 1547200000 19892 1741 18277 101978;101979;101980;101981;101982;101983;101984;101985;101986;101987;101988;101989;101990;101991;101992;101993 123523;123524;123525;123526;123527;123528;123529;123530;123531;123532;123533;123534;123535;123536;123537;123538;123539;123540;123541;123542;123543;123544;123545;123546;123547;123548;123549 123548 27 VAGIHKK Unmodified 751.47046 0.47045799 813 P26373;P26373-2 RPL13 60S ribosomal protein L13 yes no 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 29.534 29.417 3 0.0072971 5775 20211116_3428_TMUAki_TMT10x_P_F1 83.801 24.596 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19893 813 18278 101994;101995 123550;123551 123550 2 VAGMDVELTVEER Oxidation (M) 1462.6974 0.69735898 1342 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 1 0 By MS/MS By MS/MS 2.33 1.53 7 4 4 2 1 10 8 47.358 47.233 2;3 2.6901E-29 14929 20211116_3439_TMUAki_TMT10x_S_F1 240.15 209.45 85773000 141430000 421990 136670000 125770000 166270000 100180000 149060000 156910000 132370000 130020000 79858000 131960000 7106000 140200000 119910000 167170000 104710000 151930000 156190000 129970000 126260000 32 32 12 32 32 32 32 32 32 32 32 43508000 70754000 183090 70470000 76727000 116350000 56047000 71053000 75918000 63091000 62185000 40507000 66020000 3655500 72597000 73023000 114680000 58547000 74289000 75877000 61946000 60412000 17 17 4 17 17 17 17 17 17 17 17 42265000 70680000 238900 66199000 49040000 49923000 44133000 78009000 80990000 69281000 67839000 39352000 65936000 3450500 67607000 46889000 52494000 46164000 77636000 80314000 68023000 65849000 15 15 8 15 15 15 15 15 15 15 15 21250000000 12405000000 8844800000 19894 1342 18279 101996;101997;101998;101999;102000;102001;102002;102003;102004;102005;102006;102007;102008;102009;102010;102011;102012;102013 123552;123553;123554;123555;123556;123557;123558;123559;123560;123561;123562;123563;123564;123565;123566;123567;123568;123569;123570;123571;123572;123573;123574;123575;123576;123577;123578;123579;123580;123581;123582;123583;123584;123585 123572 1799 34 VAGMDVELTVEER Unmodified 1446.7024 0.70244436 1342 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.943 2 1 1 2 59.14 58.991 2 1.0636E-08 19904 20211116_3439_TMUAki_TMT10x_S_F1 121.68 104.77 15062000 24609000 104160 22566000 15990000 18971000 15954000 15357000 13282000 13816000 19129000 14025000 22955000 1350800 23112000 15337000 19466000 16102000 15751000 13836000 13557000 18272000 4 4 3 4 4 4 4 4 4 4 4 7747800 11381000 79043 10257000 8022700 12179000 8391600 6734900 5830800 6166100 9888900 7214500 10616000 719860 10572000 7706600 12167000 8413400 7105300 6187900 6045500 9413800 2 2 2 2 2 2 2 2 2 2 2 7314200 13228000 25117 12309000 7967700 6791100 7562000 8622600 7451000 7650100 9239800 6810400 12339000 630960 12540000 7630600 7299900 7688200 8645300 7648500 7511500 8857900 2 2 1 2 2 2 2 2 2 2 2 693200000 367220000 325980000 19895 1342 18279 102014;102015;102016 123586;123587;123588;123589;123590 123589 5 VAGQDGSVVQFK Unmodified 1233.6354 0.63535107 1323 P61956;P61956-2;P55854;Q6EEV6;P55854-2 SUMO2;SUMO3;SUMO4 Small ubiquitin-related modifier 2;Small ubiquitin-related modifier 3;Small ubiquitin-related modifier 4 yes no 0 0 0 0 By MS/MS By MS/MS 5 1 1 2 3 4 5 5 49.125 49.275 2;3 4.4538E-17 14309 20211116_3433_TMUAki_TMT10x_P_F5 215.79 178.6 41105000 66195000 335060 80427000 83991000 59186000 47570000 52148000 61084000 40055000 65741000 38275000 61820000 4238600 80726000 79634000 61447000 50575000 53014000 61716000 39618000 63274000 12 12 10 12 12 12 12 12 12 12 12 15484000 24809000 108780 29941000 57002000 38496000 21584000 19358000 22656000 14906000 24733000 14418000 23168000 1966600 30311000 53773000 38259000 23778000 20514000 23075000 14741000 23795000 5 5 5 5 5 5 5 5 5 5 5 25621000 41386000 226270 50486000 26989000 20690000 25987000 32791000 38428000 25149000 41009000 23857000 38652000 2271900 50416000 25861000 23188000 26797000 32500000 38641000 24876000 39480000 7 7 5 7 7 7 7 7 7 7 7 4562600000 2022400000 2540100000 19896 1323 18280 102017;102018;102019;102020;102021;102022;102023;102024;102025;102026 123591;123592;123593;123594;123595;123596;123597;123598;123599;123600;123601;123602;123603 123593 13 VAGTQACATETIDTSR Unmodified 1679.7785 0.77846285 2642 Q9BRR6;Q9BRR6-4;Q9BRR6-3;Q9BRR6-2 ADPGK ADP-dependent glucokinase yes no 0 0 0 0 By MS/MS 3 0 1 1 36.227 36.234 3 9.8247E-07 10455 20211116_3430_TMUAki_TMT10x_P_F3 99.711 85.994 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19897 2642 18281 102027 123604 123604 1 VAGYAALLEQYQK Unmodified 1452.7613 0.76127986 1230 P54920 NAPA Alpha-soluble NSF attachment protein yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 3 2 1 72.956 72.926 2;3 7.4993E-15 23496 20211116_3436_TMUAki_TMT10x_P_F8 175.65 135.94 20519000 33965000 1131200 35638000 21038000 35530000 25881000 20907000 19646000 23006000 24408000 19113000 31699000 2762700 36237000 20362000 35874000 25806000 22058000 20428000 22382000 23398000 3 3 3 3 3 3 3 3 3 3 3 15758000 24696000 996380 27087000 13952000 29673000 19907000 15597000 14455000 17367000 18352000 14680000 23053000 2209800 27503000 13588000 29753000 19712000 16621000 15082000 16888000 17583000 2 2 2 2 2 2 2 2 2 2 2 4760500 9269000 134860 8551200 7085100 5857700 5973900 5310400 5191100 5639200 6056100 4433500 8646300 552920 8734000 6773700 6121300 6093400 5436700 5346000 5494000 5815300 1 1 1 1 1 1 1 1 1 1 1 1420600000 931300000 489310000 19898 1230 18282 102028;102029;102030 123605;123606;123607 123606 3 VAHALAEGLGVIACIGEK Unmodified 1806.9662 0.96620404 1271 P60174;P60174-1;P60174-4 TPI1 Triosephosphate isomerase yes no 0 0 0 0 By MS/MS By MS/MS 4.38 2.97 8 13 1 1 6 11 23 17 60.772 60.737 2;3;4 3.7426E-50 25659 20211116_3436_TMUAki_TMT10x_P_F8 228.8 200.79 152190000 245290000 1628600 236270000 162670000 225790000 176190000 122750000 111020000 139010000 172360000 141720000 228850000 13621000 241520000 156370000 228350000 175990000 130490000 117970000 135100000 164370000 35 35 17 35 35 35 35 35 35 34 35 100420000 160010000 957490 154810000 100840000 175790000 114450000 81600000 74014000 93229000 115040000 93508000 149290000 8751400 158610000 97064000 175670000 114130000 88067000 78522000 90573000 109700000 20 20 6 20 20 20 20 20 20 19 20 51770000 85286000 671080 81463000 61828000 49994000 61736000 41153000 37006000 45784000 57325000 48207000 79567000 4869500 82906000 59309000 52673000 61860000 42426000 39451000 44524000 54670000 15 15 11 15 15 15 15 15 15 15 15 37540000000 23099000000 14441000000 19899 1271 18283 102031;102032;102033;102034;102035;102036;102037;102038;102039;102040;102041;102042;102043;102044;102045;102046;102047;102048;102049;102050;102051;102052;102053;102054;102055;102056;102057;102058;102059;102060;102061;102062;102063;102064;102065;102066;102067;102068;102069;102070 123608;123609;123610;123611;123612;123613;123614;123615;123616;123617;123618;123619;123620;123621;123622;123623;123624;123625;123626;123627;123628;123629;123630;123631;123632;123633;123634;123635;123636;123637;123638;123639;123640;123641;123642;123643;123644;123645;123646;123647;123648;123649 123629 42 VAHFLEK Unmodified 842.46504 0.46503826 936 P35606;P35606-2 COPB2 Coatomer subunit beta' yes no 0 0 0 0 By matching By MS/MS 6.67 0.471 1 2 1 2 41.51 42.042 3 0.015924 12489 20211116_3446_TMUAki_TMT10x_S_F7 73.039 37.159 3290100 4773400 734290 5983700 3070100 3990200 3890500 3273500 3729000 3255500 4277100 3068900 4458600 954030 5989100 3008900 4171800 3898400 3363900 3820100 3180300 4109000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3290100 4773400 734290 5983700 3070100 3990200 3890500 3273500 3729000 3255500 4277100 3068900 4458600 954030 5989100 3008900 4171800 3898400 3363900 3820100 3180300 4109000 2 2 2 2 2 2 2 2 2 2 2 125260000 78507000 46752000 19900 936 18284 102071;102072;102073 123650;123651;123652 123651 3 VAHLALK Unmodified 750.47521 0.47520902 1232 P55036;P55036-2 PSMD4 26S proteasome non-ATPase regulatory subunit 4 yes no 0 0 0 0 By MS/MS By MS/MS 4 3.29 2 1 2 1 4 36.834 36.976 3 0.0072376 8980 20211116_3428_TMUAki_TMT10x_P_F1 88.591 0 1868600 3127100 17873 3137000 2661000 2600100 2039100 2042800 2089400 1893200 2427600 1740000 2917900 182090 3191500 2536900 2669400 2102400 2100700 2135400 1855200 2331400 3 3 2 3 3 3 3 3 3 3 3 733100 1162700 2385.2 1199800 1414500 1591100 874990 816070 801660 713120 881850 682610 1085100 72545 1227200 1342800 1579300 913480 865760 821600 700710 848200 1 1 1 1 1 1 1 1 1 1 1 1135500 1964400 15488 1937200 1246600 1009000 1164100 1226800 1287700 1180100 1545800 1057400 1832900 109540 1964300 1194100 1090100 1188900 1234900 1313800 1154500 1483200 2 2 1 2 2 2 2 2 2 2 2 90056000 41945000 48111000 19901 1232 18285 102074;102075;102076;102077;102078 123653;123654;123655;123656 123653 4 VAHMEFCYQELCQLAAER Oxidation (M) 2269.9918 0.99184321 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 1 0 By MS/MS By matching 4.5 0.5 1 1 1 1 59.568 59.686 3 0.002628 18339 20211116_3431_TMUAki_TMT10x_P_F4 59.372 54.163 3656200 5523100 110300 5981000 4415400 7200700 3974300 4251800 4601400 4540400 4126500 3405100 5155400 416550 6087500 4229200 7194100 4073700 4480400 4636900 4422500 3995400 1 1 1 1 1 1 1 1 1 1 1 3656200 5523100 110300 5981000 4415400 7200700 3974300 4251800 4601400 4540400 4126500 3405100 5155400 416550 6087500 4229200 7194100 4073700 4480400 4636900 4422500 3995400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 827290000 532050000 295240000 19902 1475 18286 102079;102080 123657 123657 2002 1 VAHPIRPKPPSATSIPAILK Unmodified 2092.2521 0.25207937 3182 Q9UMS4 PRPF19 Pre-mRNA-processing factor 19 yes yes 0 0 0 2 By MS/MS By MS/MS 5 0.816 3 3 3 6 3 46.077 46.212 4;5 3.7415E-18 12239 20211116_3445_TMUAki_TMT10x_S_F6 150.59 140.1 31277000 52956000 292560 60221000 48918000 58491000 36329000 41183000 46954000 42438000 45615000 29123000 49440000 2935900 60896000 46594000 59304000 37837000 42783000 47255000 41395000 44045000 13 13 9 13 13 13 13 13 13 13 13 17390000 27372000 111060 32137000 39115000 43401000 24679000 22614000 24393000 21755000 24113000 16192000 25559000 1760300 32616000 37144000 43052000 25779000 24016000 24818000 21283000 23269000 8 8 6 8 8 8 8 8 8 8 8 13887000 25584000 181500 28085000 9802500 15090000 11650000 18569000 22561000 20682000 21502000 12931000 23882000 1175600 28280000 9450800 16252000 12058000 18768000 22437000 20112000 20775000 5 5 3 5 5 5 5 5 5 5 5 7663400000 5327500000 2335900000 19903 3182 18287 102081;102082;102083;102084;102085;102086;102087;102088;102089 123658;123659;123660;123661;123662;123663;123664;123665;123666;123667;123668;123669;123670 123669 13 VAHSFNCTPIEGMLSHQLK Oxidation (M) 2184.0456 0.045593344 3217 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 1 0 By MS/MS By MS/MS 5.92 2.62 2 1 2 3 5 6 7 46.264 46.399 3;4;5 2.6957E-12 12586 20211116_3436_TMUAki_TMT10x_P_F8 127.32 118.96 42298000 74102000 824410 78451000 61442000 74026000 44837000 71169000 69047000 62665000 66458000 39387000 69161000 4096400 79660000 58528000 75621000 47098000 72249000 69092000 61552000 64190000 21 21 15 21 21 21 21 21 21 21 21 17599000 30526000 283300 32553000 39133000 51424000 27415000 29496000 27789000 25987000 27942000 16388000 28492000 1682800 33348000 37235000 50731000 28433000 30991000 28260000 25525000 26950000 9 9 6 9 9 9 9 9 9 9 9 24698000 43575000 541100 45898000 22309000 22602000 17422000 41672000 41258000 36677000 38516000 23000000 40669000 2413600 46311000 21294000 24890000 18665000 41258000 40832000 36027000 37239000 12 12 9 12 12 12 12 12 12 12 12 16382000000 10239000000 6143100000 19904 3217 18288 102090;102091;102092;102093;102094;102095;102096;102097;102098;102099;102100;102101;102102 123671;123672;123673;123674;123675;123676;123677;123678;123679;123680;123681;123682;123683;123684;123685;123686;123687;123688;123689;123690;123691;123692 123677 3205 22 VAHSFNCTPIEGMLSHQLK Unmodified 2168.0507 0.050678722 3217 Q9UQ80;Q9UQ80-2 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 0 0 By MS/MS By MS/MS 4.22 3.19 3 2 1 3 5 4 56.403 56.401 3;4 6.1684E-18 16635 20211116_3436_TMUAki_TMT10x_P_F8 154.49 143.88 100540000 153530000 981250 181750000 115730000 119480000 107910000 62817000 50534000 66360000 107950000 93611000 143370000 8828000 182490000 110790000 124290000 108090000 66834000 55957000 64665000 102360000 17 17 11 17 17 17 17 17 17 17 17 52506000 77840000 561920 96343000 68596000 85497000 67545000 31953000 24408000 34513000 55714000 48892000 72702000 4992600 96817000 65773000 86564000 67233000 35266000 27829000 33602000 52776000 9 9 5 9 9 9 9 9 9 9 9 48030000 75690000 419330 85404000 47139000 33987000 40365000 30865000 26126000 31847000 52238000 44720000 70663000 3835400 85672000 45020000 37725000 40857000 31568000 28128000 31063000 49584000 8 8 6 8 8 8 8 8 8 8 8 22206000000 11441000000 10765000000 19905 3217 18288 102103;102104;102105;102106;102107;102108;102109;102110;102111 123693;123694;123695;123696;123697;123698;123699;123700;123701;123702;123703;123704;123705;123706;123707;123708;123709 123699 17 VAHTCLHPQESLPDTR Unmodified 1859.8948 0.89483001 275 O60563;O60563-2 CCNT1 Cyclin-T1 yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 31.883 31.868 4 2.6286E-07 7429 20211116_3433_TMUAki_TMT10x_P_F5 105.63 82.718 798610 1314000 0 1229400 1475900 1378900 919800 733650 855950 741270 1038100 743480 1225800 62614 1262400 1400300 1381000 960090 778720 880040 723650 995740 2 2 0 2 2 2 2 2 2 2 2 798610 1314000 0 1229400 1475900 1378900 919800 733650 855950 741270 1038100 743480 1225800 62614 1262400 1400300 1381000 960090 778720 880040 723650 995740 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 58288000 58288000 0 19906 275 18289 102112;102113 123710;123711 123711 2 VAIAALEVLEEENLAENADK Unmodified 2140.0899 0.089943804 484 P04181;P04181-2 OAT Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form yes no 0 0 0 0 By MS/MS By matching 1.75 0.829 2 1 1 1 3 80.69 80.669 3 6.6887E-25 26565 20211116_3428_TMUAki_TMT10x_P_F1 174.32 158.2 6674100 9957400 0 11087000 5767800 8780700 6298700 2690300 2512800 3247600 6433000 6213700 9295500 465250 11196000 5538900 8950600 6244100 3059400 2861100 3148800 6084400 1 1 0 1 1 1 1 1 1 1 1 6674100 9957400 0 11087000 5767800 8780700 6298700 2690300 2512800 3247600 6433000 6213700 9295500 465250 11196000 5538900 8950600 6244100 3059400 2861100 3148800 6084400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2765000000 1190600000 1574400000 19907 484 18290 102114;102115;102116;102117 123712 123712 1 VAIDVGYR Unmodified 891.48142 0.48141661 680 P15121 AKR1B1 Aldose reductase yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 1.12 2 2 2 2 4 4 44.596 44.727 2 0.00046735 13770 20211116_3430_TMUAki_TMT10x_P_F3 157.21 120.18 30377000 42798000 92344 48645000 44683000 45746000 31660000 31420000 29982000 30463000 35978000 28279000 39957000 2118100 49169000 42478000 46460000 32743000 32640000 30788000 29791000 34521000 6 6 2 6 6 6 6 6 6 6 6 20872000 29124000 70100 33407000 34239000 37305000 21104000 21956000 20905000 21102000 24277000 19429000 27192000 1370100 33836000 32465000 37418000 22087000 23073000 21395000 20645000 23314000 4 4 1 4 4 4 4 4 4 4 4 9505200 13674000 22244 15238000 10444000 8441100 10556000 9464300 9077200 9361000 11701000 8849900 12765000 748050 15333000 10014000 9041500 10656000 9568000 9392300 9146700 11207000 2 2 1 2 2 2 2 2 2 2 2 4043800000 2021500000 2022300000 19908 680 18291 102118;102119;102120;102121;102122;102123;102124;102125 123713;123714;123715;123716;123717;123718;123719;123720 123713 8 VAIEHLDK Unmodified 923.50763 0.50763136 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 0 By MS/MS 3 0.816 1 1 1 3 33.317 33.288 3 0.0027936 12304 20211116_3441_TMUAki_TMT10x_S_F3 89.247 41.424 2014800 3185300 10932 3328300 2049000 1593100 2235400 1916200 2009600 1768900 2448500 1876100 2972800 177710 3359300 1970000 1737300 2250700 1927500 2069900 1733700 2348400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2014800 3185300 10932 3328300 2049000 1593100 2235400 1916200 2009600 1768900 2448500 1876100 2972800 177710 3359300 1970000 1737300 2250700 1927500 2069900 1733700 2348400 2 2 2 2 2 2 2 2 2 2 2 116470000 0 116470000 19909 1079 18292 102126;102127;102128 123721;123722 123721 2 VAIEPGAPR Unmodified 908.50797 0.50796571 1473 Q00796 SORD Sorbitol dehydrogenase yes yes 0 0 0 0 By MS/MS By MS/MS 3.8 1.17 1 1 1 2 2 3 34.315 34.309 2 6.2549E-06 8431 20211116_3431_TMUAki_TMT10x_P_F4 169.06 140.16 4407100 6821000 6580.8 7023300 5550600 5585600 4900800 3864900 4406700 3854700 5650100 4103100 6365500 335860 7129100 5303000 5740300 4989800 4016100 4548800 3765100 5412000 5 5 2 5 5 5 5 5 5 5 5 2241700 3166800 0 3353300 3473600 3682700 2480200 1623000 2040800 1731500 2628600 2086900 2955700 162000 3412700 3303000 3685100 2554100 1757400 2116200 1686600 2517500 1 1 0 1 1 1 1 1 1 1 1 2165400 3654100 6580.8 3670000 2077000 1902900 2420700 2241900 2365900 2123200 3021500 2016200 3409800 173850 3716400 2000000 2055200 2435700 2258700 2432500 2078500 2894400 4 4 2 4 4 4 4 4 4 4 4 275640000 188020000 87627000 19910 1473 18293 102129;102130;102131;102132;102133 123723;123724;123725;123726;123727 123723 5 VAIEPGAPRENDEFCK Unmodified 1830.857 0.85704752 1473 Q00796 SORD Sorbitol dehydrogenase yes yes 0 0 0 1 By MS/MS 4 0 1 1 44.741 44.853 3 0.00079233 12281 20211116_3431_TMUAki_TMT10x_P_F4 66.673 45.372 1230800 1950900 0 2859000 4016500 3953600 2204200 2946900 3034700 2056600 2537600 1146000 1823800 140750 2868800 3805600 3937500 2356300 3020300 3033300 2045300 2463300 1 1 0 1 1 1 1 1 1 1 1 1230800 1950900 0 2859000 4016500 3953600 2204200 2946900 3034700 2056600 2537600 1146000 1823800 140750 2868800 3805600 3937500 2356300 3020300 3033300 2045300 2463300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 170110000 170110000 0 19911 1473 18294 102134 123728 123728 1 VAIFIEK Unmodified 818.49019 0.49019038 3056 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 61.094 61.697 2 0.005513 20059 20211116_3435_TMUAki_TMT10x_P_F7 108.09 26.128 16715000 26450000 193330 24249000 19946000 24630000 18696000 20066000 18900000 18201000 21836000 15564000 24673000 1611200 24899000 19106000 24965000 19036000 20577000 19323000 17853000 20974000 2 2 2 2 2 2 2 2 2 2 2 8349900 12135000 172730 11429000 11405000 15664000 9817100 9588100 8897300 8922200 10972000 7775900 11321000 896040 11773000 10907000 15559000 10012000 10035000 9165300 8741400 10520000 1 1 1 1 1 1 1 1 1 1 1 8364800 14316000 20596 12820000 8541000 8966000 8879000 10478000 10003000 9279100 10864000 7788600 13352000 715160 13127000 8199300 9405700 9023400 10541000 10157000 9111900 10454000 1 1 1 1 1 1 1 1 1 1 1 1068700000 528460000 540230000 19912 3056 18295 102135;102136 123729;123730 123729 2 VAIHEAMEQQTISIAK Oxidation (M) 1783.9138 0.91383411 912 P33992 MCM5 DNA replication licensing factor MCM5 yes yes 0 0 1 0 By matching By MS/MS 5 0 2 1 1 44.711 44.844 3 7.0204E-06 11472 20211116_3444_TMUAki_TMT10x_S_F5 98.694 85.926 1000100 1581800 0 2003800 691100 798610 785400 1638100 1579900 1414200 1306400 931080 1477600 60144 1996400 663830 906780 816330 1616500 1562800 1390400 1268700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1000100 1581800 0 2003800 691100 798610 785400 1638100 1579900 1414200 1306400 931080 1477600 60144 1996400 663830 906780 816330 1616500 1562800 1390400 1268700 1 1 0 1 1 1 1 1 1 1 1 256030000 148360000 107670000 19913 912 18296 102137;102138 123731 123731 1129 1 VAIHYINPPNPAK Unmodified 1432.7827 0.78268401 1431 P78406 RAE1 mRNA export factor yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 2.43 2 3 1 3 3 45.657 45.585 3;4 6.8446E-07 13829 20211116_3429_TMUAki_TMT10x_P_F2 118.28 99.967 11414000 19669000 242110 22750000 19992000 20659000 13737000 18801000 18002000 15624000 17687000 10630000 18364000 1264800 22960000 19025000 21133000 14393000 19114000 18116000 15390000 17071000 11 11 9 11 11 11 11 11 11 11 11 5921500 10116000 145530 11523000 15020000 16436000 9655800 9663400 9357700 8359100 8930800 5514600 9444300 753990 11730000 14276000 16289000 10065000 10128000 9517700 8217700 8628400 5 5 5 5 5 5 5 5 5 5 5 5492900 9552900 96573 11227000 4972100 4223100 4081300 9137200 8643900 7265200 8755800 5114900 8920100 510850 11230000 4749100 4844600 4327600 8986000 8598000 7172700 8443000 6 6 4 6 6 6 6 6 6 6 6 2161800000 1542000000 619840000 19914 1431 18297 102139;102140;102141;102142;102143;102144 123732;123733;123734;123735;123736;123737;123738;123739;123740;123741;123742 123735 11 VAILVDDMADTCGTICHAADK Unmodified 2275.0283 0.0282883 1279;633 P11908;P11908-2;P60891;P60891-2 PRPS2;PRPS1 Ribose-phosphate pyrophosphokinase 2;Ribose-phosphate pyrophosphokinase 1 no no 0 0 0 0 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 71.697 71.521 3 2.9254E-19 24880 20211116_3430_TMUAki_TMT10x_P_F3 144.72 138.62 14668000 24838000 296870 22844000 16444000 23268000 20500000 12506000 11030000 13540000 18377000 13660000 23169000 1504400 23451000 15886000 23436000 20289000 13289000 11897000 13181000 17500000 5 5 4 5 5 5 5 5 5 5 5 8920300 15064000 236340 13900000 10460000 17036000 13041000 7979800 7060200 8108300 11123000 8307500 14052000 981390 14310000 10109000 16959000 12908000 8574200 7588500 7913600 10604000 3 3 3 3 3 3 3 3 3 3 3 5747800 9774700 60527 8943200 5983300 6231500 7459200 4526400 3970000 5431900 7254300 5352100 9117700 522990 9141800 5777000 6477200 7381000 4715300 4308100 5267800 6896300 2 2 1 2 2 2 2 2 2 2 2 2064000000 1495000000 569040000 19915 633;1279 18298 102145;102146;102147;102148 123743;123744;123745;123746;123747;123748 123743 6 VAILVDDMADTCGTICHAADK Oxidation (M) 2291.0232 0.023202922 1279;633 P11908;P11908-2;P60891;P60891-2 PRPS2;PRPS1 Ribose-phosphate pyrophosphokinase 2;Ribose-phosphate pyrophosphokinase 1 no no 0 0 1 0 By MS/MS 4 0 1 1 56.763 56.716 3 2.5848E-10 17578 20211116_3442_TMUAki_TMT10x_S_F4 109.89 100.85 2022000 3746600 36150 3308900 2200000 2819300 2088900 4790900 4172800 4127800 3588300 1882800 3494400 184410 3399200 2107600 2946600 2189200 4751800 4133200 4058800 3479600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2022000 3746600 36150 3308900 2200000 2819300 2088900 4790900 4172800 4127800 3588300 1882800 3494400 184410 3399200 2107600 2946600 2189200 4751800 4133200 4058800 3479600 2 2 1 2 2 2 2 2 2 2 2 301140000 0 301140000 19916 633;1279 18298 102149 123749;123750 123749 658 2 VAIQLNDTHPALSIPELMR Unmodified 2117.1303 0.13030925 620 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 By MS/MS 7 0 1 1 71.975 72.183 3 1.5453E-13 24982 20211116_3446_TMUAki_TMT10x_S_F7 140.16 23.864 2023800 3340100 0 2885600 2354300 2097000 2545400 1857400 1744100 1943400 2452400 1884200 3115000 155480 2964100 2261100 2179600 2547100 1903100 1834500 1894500 2343800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2023800 3340100 0 2885600 2354300 2097000 2545400 1857400 1744100 1943400 2452400 1884200 3115000 155480 2964100 2261100 2179600 2547100 1903100 1834500 1894500 2343800 1 1 0 1 1 1 1 1 1 1 1 568630000 0 568630000 19917 620 18299 102150 123751 123751 1 VAIVKPGVPMEIVLNK Oxidation (M) 1722.0114 0.011363315 3301 Q9Y4L1 HYOU1 Hypoxia up-regulated protein 1 yes yes 0 0 1 1 By MS/MS 2 0 1 1 63.091 62.802 3 0.0006988 20835 20211116_3429_TMUAki_TMT10x_P_F2 70.281 57.144 11816000 18642000 186320 19834000 17981000 29726000 15227000 20962000 20840000 17312000 17174000 11003000 17399000 1239600 20298000 17183000 29476000 15763000 21646000 20825000 17058000 16681000 2 2 2 2 2 2 2 2 2 2 2 11816000 18642000 186320 19834000 17981000 29726000 15227000 20962000 20840000 17312000 17174000 11003000 17399000 1239600 20298000 17183000 29476000 15763000 21646000 20825000 17058000 16681000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1035100000 1035100000 0 19918 3301 18300 102151 123752;123753 123752 3267 2 VAIVKPGVPMEIVLNK Unmodified 1706.0164 0.016448693 3301 Q9Y4L1 HYOU1 Hypoxia up-regulated protein 1 yes yes 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 72.633 72.419 3 4.3127E-16 26262 20211116_3441_TMUAki_TMT10x_S_F3 159.34 147.82 5560300 8824800 22910 9524600 6619100 4311800 6420000 3164000 2508600 3558500 6119600 5177300 8237100 497160 9589300 6343000 4688300 6401400 3286700 2851400 3459200 5791600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5560300 8824800 22910 9524600 6619100 4311800 6420000 3164000 2508600 3558500 6119600 5177300 8237100 497160 9589300 6343000 4688300 6401400 3286700 2851400 3459200 5791600 1 1 1 1 1 1 1 1 1 1 1 629500000 0 629500000 19919 3301 18300 102152;102153 123754 123754 1 VALAGLLGFGLGK Unmodified 1214.7387 0.73869393 1913 Q56VL3 OCIAD2 OCIA domain-containing protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 80.545 80.556 2;3 4.5824E-24 25952 20211116_3434_TMUAki_TMT10x_P_F6 193.41 120.59 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19920 1913 18301 102154;102155 123755;123756 123755 2 VALAGTFHYYSCER Unmodified 1672.7668 0.76677595 1826 Q15738 NSDHL Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating yes yes 0 0 0 0 By MS/MS By MS/MS 6 2.92 1 1 2 1 3 48.892 48.936 3 8.1961E-20 13151 20211116_3447_TMUAki_TMT10x_S_F8 151.54 144.5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19921 1826 18302 102156;102157;102158;102159 123757;123758;123759;123760 123759 4 VALEIFQHSK Unmodified 1170.6397 0.63970816 3021 Q9NYK5;Q9NYK5-2 MRPL39 39S ribosomal protein L39, mitochondrial yes no 0 0 0 0 By MS/MS 8 0 1 1 55.663 55.796 3 0.0043022 16513 20211116_3436_TMUAki_TMT10x_P_F8 64.439 32.945 1945400 3132800 8849.1 3021500 3260000 4462000 2511100 2798700 2424600 2433000 2701100 1811500 2922900 187950 3111800 3107500 4419400 2583600 2918500 2480200 2391200 2597100 1 1 1 1 1 1 1 1 1 1 1 1945400 3132800 8849.1 3021500 3260000 4462000 2511100 2798700 2424600 2433000 2701100 1811500 2922900 187950 3111800 3107500 4419400 2583600 2918500 2480200 2391200 2597100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 260420000 260420000 0 19922 3021 18303 102160 123761 123761 1 VALGHGLK Unmodified 793.48102 0.48102268 1550 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 35.755 35.737 3 0.00065266 8253 20211116_3428_TMUAki_TMT10x_P_F1 117.93 55.217 2115000 3415600 10761 3378100 3031800 3152400 2558700 2244000 2448800 2179700 2693400 1969400 3187000 194230 3445500 2895600 3205000 2616800 2325500 2504700 2131400 2590600 3 3 2 3 3 3 3 3 3 3 3 1154800 1803800 10267 1814100 1967200 2299500 1452900 1208900 1341300 1174600 1451500 1075300 1683200 112690 1857300 1873700 2288100 1497200 1283100 1373400 1148600 1396800 2 2 1 2 2 2 2 2 2 2 2 960250 1611800 494.12 1563900 1064600 852960 1105800 1035100 1107500 1005000 1241800 894090 1503800 81534 1588200 1021900 916890 1119500 1042300 1131400 982800 1193800 1 1 1 1 1 1 1 1 1 1 1 133680000 54946000 78738000 19923 1550 18304 102161;102162 123762;123763;123764 123762 3 VALIGFPSVGK Unmodified 1086.6437 0.64373091 1233 P55039 DRG2 Developmentally-regulated GTP-binding protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 72.361 72.123 2 0.006351 26207 20211116_3441_TMUAki_TMT10x_S_F3 70.256 49.102 37591000 60850000 744990 55296000 50768000 44619000 49287000 41869000 40045000 45594000 51006000 35006000 56759000 3995400 56644000 48687000 46052000 49785000 42820000 41532000 44376000 48864000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37591000 60850000 744990 55296000 50768000 44619000 49287000 41869000 40045000 45594000 51006000 35006000 56759000 3995400 56644000 48687000 46052000 49785000 42820000 41532000 44376000 48864000 3 3 3 3 3 3 3 3 3 3 3 725860000 218820000 507040000 19924 1233 18305 102163;102164;102165;102166 123765;123766;123767;123768 123766 4 VALLDVFR Unmodified 931.5491 0.54910224 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 0 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 75.469 75.414 2 0.00054151 25958 20211116_3429_TMUAki_TMT10x_P_F2 138.55 113.55 27523000 47497000 89951 44701000 30672000 41926000 31007000 27996000 25336000 28394000 33005000 25627000 44310000 2341200 45758000 29419000 42569000 31258000 29180000 26295000 27714000 31601000 7 7 4 7 7 7 7 7 7 7 7 14047000 23941000 27065 22442000 17012000 28490000 16561000 13825000 12626000 14489000 16335000 13079000 22334000 1166300 23091000 16298000 28321000 16701000 14816000 13149000 14124000 15643000 3 3 1 3 3 3 3 3 3 3 3 13476000 23556000 62886 22259000 13660000 13436000 14446000 14172000 12710000 13905000 16670000 12548000 21976000 1174900 22667000 13121000 14249000 14558000 14364000 13146000 13591000 15958000 4 4 3 4 4 4 4 4 4 4 4 4091000000 2348700000 1742300000 19925 799 18306 102167;102168;102169;102170;102171;102172 123769;123770;123771;123772;123773;123774;123775 123770 7 VALNVSCANLLDK Unmodified 1415.7442 0.74424959 309 O75131 CPNE3 Copine-3 yes yes 0 0 0 0 By MS/MS 7 0 2 2 65.297 65.905 2 0.00065277 21808 20211116_3435_TMUAki_TMT10x_P_F7 81.525 58.205 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19926 309 18307 102173;102174 123776;123777 123776 2 VALPDGTTVTVR Unmodified 1227.6823 0.68230126 2515 Q96L92;Q96L92-3;Q96L92-2 SNX27 Sorting nexin-27 yes no 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 52.105 52.249 2 2.0469E-07 14713 20211116_3445_TMUAki_TMT10x_S_F6 135.87 109.46 9694700 15129000 100140 17224000 12649000 14216000 9622300 12801000 13117000 12032000 13267000 9027400 14125000 924820 17378000 12057000 14636000 10027000 13064000 13197000 11783000 12794000 3 3 2 3 3 3 3 3 3 3 3 3813700 6116900 85981 7260600 7869300 9639400 5258300 5225500 5159000 4719400 5547300 3551600 5712000 453120 7361800 7485000 9574000 5467200 5520500 5266500 4630100 5339300 1 1 1 1 1 1 1 1 1 1 1 5881000 9012100 14159 9963300 4779500 4576700 4364000 7575900 7957800 7313000 7719600 5475800 8412800 471700 10016000 4572300 5062100 4559600 7543400 7930000 7153100 7454200 2 2 1 2 2 2 2 2 2 2 2 628220000 451740000 176480000 19927 2515 18308 102175;102176;102177 123778;123779;123780 123779 3 VALQFPDQLLGDAVAVAAR Unmodified 1953.0684 0.068360922 2628 Q9BQC3;Q9BQC3-2 DPH2 Diphthamide biosynthesis protein 2 yes no 0 0 0 0 By MS/MS 8 0 1 1 80.672 80.676 3 8.8139E-05 26672 20211116_3436_TMUAki_TMT10x_P_F8 70.414 59.308 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19928 2628 18309 102178 123781 123781 1 VALRGEDVPLTEQTVSQVLQSAK Unmodified 2467.3282 0.32821702 1321 P61923;P61923-4;P61923-2;P61923-3 COPZ1 Coatomer subunit zeta-1 yes no 0 0 0 1 By MS/MS By MS/MS 6.57 1.12 3 4 3 4 6 8 74.21 74.212 3;4 7.0931E-46 24043 20211116_3436_TMUAki_TMT10x_P_F8 207.67 194.61 99812000 166840000 1208800 160620000 115490000 132340000 121750000 86933000 86345000 95097000 119710000 92942000 155660000 8880700 163880000 110950000 135540000 122070000 90924000 90575000 92541000 114440000 21 21 14 21 21 21 21 21 21 21 21 46738000 72983000 511090 71181000 45600000 74773000 54340000 38223000 37435000 43344000 53218000 43520000 68094000 4188400 72797000 43964000 75131000 54139000 40860000 39383000 42121000 50849000 8 8 7 8 8 8 8 8 8 8 8 53075000 93859000 697730 89439000 69890000 57563000 67408000 48710000 48910000 51754000 66489000 49422000 87564000 4692300 91078000 66986000 60408000 67932000 50063000 51191000 50420000 63595000 13 13 7 13 13 13 13 13 13 13 13 16337000000 6472700000 9864400000 19929 1321 18310 102179;102180;102181;102182;102183;102184;102185;102186;102187;102188;102189;102190;102191;102192 123782;123783;123784;123785;123786;123787;123788;123789;123790;123791;123792;123793;123794;123795;123796;123797;123798;123799;123800;123801;123802;123803;123804 123790 23 VALSECYTVASVAEMPQNYRPHPQR Oxidation (M) 2918.3803 0.38034572 1702 Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 0 0 1 1 By MS/MS 7 0 1 1 48.897 49.521 4 1.3794E-07 15118 20211116_3435_TMUAki_TMT10x_P_F7 84.166 72.866 740800 1121400 33370 1143600 1241500 1969900 993190 1196300 1135900 928270 1030700 690010 1046400 99529 1177500 1186200 1938500 1024800 1247400 1145600 917640 997550 1 1 1 1 1 1 1 1 1 1 1 740800 1121400 33370 1143600 1241500 1969900 993190 1196300 1135900 928270 1030700 690010 1046400 99529 1177500 1186200 1938500 1024800 1247400 1145600 917640 997550 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 390250000 390250000 0 19930 1702 18311 102193 123805 123805 2291 1 VALSEPQPERR Unmodified 1280.6837 0.68369824 2715 Q9BXP5;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3 SRRT Serrate RNA effector molecule homolog yes no 0 0 0 1 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 31.244 31.15 3 3.3881E-11 6830 20211116_3431_TMUAki_TMT10x_P_F4 166.65 129.7 847380 1454100 6014.3 1362800 1632300 1661200 1138900 1119700 1148500 973640 1258200 789000 1356500 81986 1401200 1552800 1661800 1181300 1161400 1171900 956930 1210400 2 2 1 2 2 2 2 2 2 2 2 614260 1059400 0 944070 1341000 1440900 848790 827100 834020 690310 904330 571900 988070 56239 978680 1273100 1423400 886240 867810 851610 679830 870200 1 1 0 1 1 1 1 1 1 1 1 233120 394720 6014.3 418700 291290 220380 290090 292620 314520 283330 353910 217100 368400 25747 422480 279640 238360 295070 293590 320300 277090 340190 1 1 1 1 1 1 1 1 1 1 1 118510000 69292000 49218000 19931 2715 18312 102194;102195;102196 123806;123807 123806 2 VALSSETEVALAR Unmodified 1344.7249 0.72489436 833 P27816;P27816-6;P27816-2 MAP4 Microtubule-associated protein 4 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 51.322 50.96 2 3.4375E-34 16464 20211116_3430_TMUAki_TMT10x_P_F3 238.51 220.62 1473900 2550600 0 2543400 1513200 1375100 1419200 2029400 1993000 1938100 2155400 1372300 2380000 121760 2577700 1448500 1487700 1462300 2027600 2008200 1896600 2074200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1473900 2550600 0 2543400 1513200 1375100 1419200 2029400 1993000 1938100 2155400 1372300 2380000 121760 2577700 1448500 1487700 1462300 2027600 2008200 1896600 2074200 1 1 0 1 1 1 1 1 1 1 1 103790000 0 103790000 19932 833 18313 102197;102198 123808;123809 123808 2 VALTGLTVAEYFR Unmodified 1438.782 0.78201531 518 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 78.24 78.189 2 5.0325E-25 27017 20211116_3429_TMUAki_TMT10x_P_F2 220.1 188.87 19998000 34302000 264840 28904000 18773000 34825000 26460000 20518000 24645000 25477000 26360000 18622000 31987000 1867300 29957000 18209000 34790000 26382000 21732000 25212000 24677000 25376000 3 3 2 3 3 3 3 3 3 3 3 13395000 22003000 92560 18322000 12465000 25513000 16532000 13676000 16166000 17004000 17316000 12473000 20517000 1163400 19059000 12058000 25282000 16545000 14602000 16503000 16469000 16668000 2 2 1 2 2 2 2 2 2 2 2 6602800 12300000 172280 10582000 6308800 9311400 9928200 6842400 8479300 8473000 9044400 6149100 11470000 703860 10898000 6150600 9508800 9836500 7130300 8709700 8208000 8707300 1 1 1 1 1 1 1 1 1 1 1 2494600000 1400400000 1094200000 19933 518 18314 102199;102200;102201 123810;123811;123812 123810 3 VALVYGQMNEPPGAR Oxidation (M) 1616.7981 0.79807608 518 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 6.33 0.667 1 4 4 4 5 46.124 46.403 2;3 4.1881E-06 11896 20211116_3434_TMUAki_TMT10x_P_F6 108.1 90.884 11678000 18978000 237900 22602000 18553000 18985000 13396000 16373000 16818000 14337000 17400000 10874000 17722000 1202900 22748000 17668000 19505000 13963000 16718000 16980000 14086000 16767000 10 10 6 10 10 10 10 10 10 10 10 5932900 9399200 88161 11267000 13166000 13907000 8129000 8617400 8896500 7142800 8663700 5524100 8777400 592810 11401000 12497000 13885000 8532700 8984300 9008900 7036700 8364800 6 6 3 6 6 6 6 6 6 6 6 5744700 9578900 149740 11336000 5386600 5078400 5266800 7755400 7921300 7194300 8735900 5350000 8944700 610040 11346000 5170900 5619600 5430800 7733300 7971300 7049400 8402000 4 4 3 4 4 4 4 4 4 4 4 3137700000 1632200000 1505400000 19934 518 18315 102202;102203;102204;102205;102206;102207;102208;102209;102210 123813;123814;123815;123816;123817;123818;123819;123820;123821;123822;123823 123815 428 11 VALVYGQMNEPPGAR Unmodified 1600.8032 0.80316145 518 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 7.4 0.49 3 2 1 4 53.562 54.173 2;3 6.5176E-24 17037 20211116_3435_TMUAki_TMT10x_P_F7 184.21 165.9 12806000 21112000 60305 19806000 19023000 20771000 14221000 16356000 15650000 15395000 17083000 11923000 19695000 1063300 20312000 18114000 21001000 14720000 16823000 15909000 15075000 16435000 4 4 1 4 4 4 4 4 4 4 4 6436000 10483000 0 9525400 11188000 15470000 9350600 8899700 8767100 8358300 8557600 5992000 9778300 534680 9874000 10677000 15245000 9562700 9364000 8937100 8185500 8261700 2 2 0 2 2 2 2 2 2 2 2 6369700 10628000 60305 10281000 7834900 5301400 4870100 7455800 6882700 7036300 8525600 5930700 9916200 528640 10438000 7436700 5756300 5157300 7459300 6972200 6889300 8173400 2 2 1 2 2 2 2 2 2 2 2 1291400000 777590000 513760000 19935 518 18315 102211;102212;102213;102214;102215 123824;123825;123826;123827;123828;123829;123830 123825 7 VAMANIQPQMLVAGATSIAR Oxidation (M) 2057.0762 0.076165191 717 P18206;P18206-2 VCL Vinculin yes no 0 0 1 0 By MS/MS 3 0 1 1 72.318 71.948 3 0.026923 26068 20211116_3441_TMUAki_TMT10x_S_F3 44.105 20.624 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19936 717 18316 102216 123831 123831 822 1 VAMFLTDSNNIK Unmodified 1351.6806 0.6805867 1760 Q15046;Q15046-2 KARS Lysine--tRNA ligase yes no 0 0 0 0 By MS/MS By MS/MS 8 0 3 2 1 67.633 67.673 2;3 1.0638E-16 21337 20211116_3436_TMUAki_TMT10x_P_F8 199.68 153.91 12437000 19267000 132740 20764000 15098000 16140000 13799000 8810200 7920000 9471600 13702000 11581000 17984000 1182900 21008000 14451000 16562000 13883000 9347300 8519700 9223200 13039000 3 3 2 3 3 3 3 3 3 3 3 8025100 12253000 82513 13307000 10872000 12704000 9567900 5721900 4935400 5970600 8977700 7472700 11438000 772940 13492000 10396000 12822000 9629900 6177500 5367100 5821000 8535300 2 2 1 2 2 2 2 2 2 2 2 4411500 7013700 50224 7456400 4225800 3435900 4231400 3088300 2984500 3501000 4724200 4107900 6546200 409950 7515400 4055100 3740500 4253200 3169900 3152500 3402200 4503400 1 1 1 1 1 1 1 1 1 1 1 1152100000 900180000 251910000 19937 1760 18317 102217;102218;102219 123832;123833;123834 123832 3 VAMQDATAQMAMLQFISSGLSK Unmodified 2327.1324 0.13235944 2605 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 81.981 81.98 3 1.0686E-26 27884 20211116_3442_TMUAki_TMT10x_S_F4 166.27 151.81 2846500 4252300 21869 5040500 3174500 1983200 3391300 965550 893690 1107900 2808900 2650500 3970800 260970 5040700 3050600 2186100 3351200 1037300 1086400 1076200 2650400 2 2 2 2 2 2 2 2 2 2 2 1097900 1563200 2421.7 1848400 957560 1027100 1295200 511230 467510 542080 1038000 1022300 1459700 91314 1853300 926790 1085400 1270500 546740 532070 528160 983700 1 1 1 1 1 1 1 1 1 1 1 1748600 2689100 19447 3192100 2216900 956190 2096100 454310 426190 565840 1770900 1628200 2511100 169650 3187500 2123800 1100700 2080800 490580 554360 548030 1666700 1 1 1 1 1 1 1 1 1 1 1 476470000 162180000 314300000 19938 2605 18318 102220;102221 123835;123836 123836 2 VAMQDATAQMAMLQFISSGLSK Oxidation (M) 2343.1273 0.12727406 2605 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 1 0 By MS/MS 3 0 1 1 81.028 80.991 3 1.1638E-19 29612 20211116_3441_TMUAki_TMT10x_S_F3 147.93 133.47 4951600 7647100 4525.2 8018300 6869000 3853500 6698500 1377800 1216900 1870600 4646800 4610000 7136900 394060 8091500 6579200 4126900 6633800 1540600 1599500 1806600 4376500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4951600 7647100 4525.2 8018300 6869000 3853500 6698500 1377800 1216900 1870600 4646800 4610000 7136900 394060 8091500 6579200 4126900 6633800 1540600 1599500 1806600 4376500 2 2 1 2 2 2 2 2 2 2 2 583130000 0 583130000 19939 2605 18318 102222 123837;123838 123837 2841 2 VAMSHFEPNEYIHYDLLEK Oxidation (M) 2350.094 0.093983325 2605 Q99798 ACO2 Aconitate hydratase, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 4.67 0.943 2 1 1 2 60.828 60.829 4 2.3399E-07 18310 20211116_3445_TMUAki_TMT10x_S_F6 101.38 75.516 6072100 10549000 56029 9922500 7595900 10625000 6936800 8236600 7652700 7833100 8306700 5654200 9841000 576980 10177000 7270200 10727000 7093000 8482900 7777100 7666800 7992900 2 2 2 2 2 2 2 2 2 2 2 3913700 6757200 50261 6452700 4781300 7865700 4582900 5182900 4988300 4886600 5253200 3644400 6304000 383470 6625500 4582600 7865600 4671500 5396100 5066400 4784700 5059400 1 1 1 1 1 1 1 1 1 1 1 2158400 3791800 5767.9 3469800 2814600 2759600 2354000 3053800 2664400 2946500 3053500 2009700 3537000 193510 3551900 2687600 2861700 2421400 3086800 2710800 2882100 2933500 1 1 1 1 1 1 1 1 1 1 1 1622700000 519390000 1103300000 19940 2605 18319 102223;102224;102225 123839;123840 123840 2842 2 VANDNAPEHALRPGFLSTFALATDQGSK Unmodified 2926.4573 0.45733371 3114 Q9UHA4 LAMTOR3 Ragulator complex protein LAMTOR3 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 63.797 64.349 4 9.1456E-18 21658 20211116_3446_TMUAki_TMT10x_S_F7 127.73 108.69 25209000 43333000 120940 40448000 29945000 44014000 30659000 28351000 27741000 33159000 31519000 23471000 40423000 1466400 41521000 28727000 44267000 30971000 29759000 28484000 32187000 30288000 4 4 2 4 4 4 4 4 4 4 4 14448000 23842000 0 22274000 14609000 31034000 18314000 14725000 15693000 20156000 17537000 13451000 22242000 397450 22965000 14091000 30709000 18301000 15957000 16145000 19461000 16860000 2 2 0 2 2 2 2 2 2 2 2 10761000 19490000 120940 18174000 15336000 12980000 12345000 13626000 12049000 13003000 13982000 10020000 18182000 1068900 18556000 14637000 13558000 12670000 13803000 12339000 12725000 13428000 2 2 2 2 2 2 2 2 2 2 2 2888300000 1647700000 1240600000 19941 3114 18320 102226;102227 123841;123842;123843;123844 123843 4 VANILHDDCAFLSAFGDVSKPER Unmodified 2560.238 0.2380218 2647 Q9BS26 ERP44 Endoplasmic reticulum resident protein 44 yes yes 0 0 0 1 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 76.538 76.549 4 1.155E-20 24384 20211116_3434_TMUAki_TMT10x_P_F6 148.95 142.07 21409000 36185000 278650 31858000 22389000 40160000 26977000 24565000 22288000 24256000 27624000 19935000 33748000 1962100 32930000 21594000 40050000 26979000 25753000 23069000 23702000 26482000 5 5 4 5 5 5 5 5 5 5 5 18562000 31505000 258680 27771000 17763000 36228000 23224000 21422000 18949000 20811000 23969000 17284000 29384000 1682500 28722000 17179000 36052000 23140000 22509000 19642000 20350000 22967000 4 4 3 4 4 4 4 4 4 4 4 2846900 4679800 19970 4086400 4625600 3932700 3753000 3142900 3339800 3444900 3654700 2650900 4364500 279550 4208400 4414500 3998100 3839600 3244400 3427000 3352000 3515800 1 1 1 1 1 1 1 1 1 1 1 3891400000 2684600000 1206800000 19942 2647 18321 102228;102229;102230 123845;123846;123847;123848;123849 123845 5 VANPSGNLTETYVQDR Unmodified 1762.8486 0.84859132 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 3.62 1 2 4 4 3 6 7 45.438 45.447 2;3 9.2421E-108 14055 20211116_3430_TMUAki_TMT10x_P_F3 366.5 326.45 21414000 34399000 244610 41827000 34261000 32090000 22837000 27857000 28480000 25054000 31474000 19940000 32126000 2093000 42001000 32575000 33197000 23936000 28452000 28833000 24584000 30269000 15 15 9 15 15 15 15 15 15 15 15 8141500 12614000 145110 15826000 22616000 21222000 12428000 10648000 11032000 8961900 11708000 7581500 11782000 998970 15999000 21437000 21049000 13096000 11309000 11308000 8822100 11273000 6 6 4 6 6 6 6 6 6 6 6 13272000 21785000 99505 26001000 11645000 10868000 10409000 17208000 17448000 16092000 19767000 12358000 20344000 1094000 26001000 11138000 12148000 10841000 17143000 17525000 15762000 18996000 9 9 5 9 9 9 9 9 9 9 9 5151100000 3295300000 1855900000 19943 755 18322 102231;102232;102233;102234;102235;102236;102237;102238;102239;102240;102241;102242;102243 123850;123851;123852;123853;123854;123855;123856;123857;123858;123859;123860;123861;123862;123863;123864 123852 15 VANTSTQTMGPRPAAAAAAATPAVR Oxidation (M) 2396.223 0.22304044 634 P11940 PABPC1 Polyadenylate-binding protein 1 yes yes 0 0 1 1 By MS/MS By MS/MS 1.5 0.5 2 2 3 1 33.878 33.769 3;4 5.0688E-17 7473 20211116_3428_TMUAki_TMT10x_P_F1 133.29 115.8 1189500 1886600 2938.5 2497900 2011800 1841200 1030800 996280 1145400 796260 1452200 1107500 1762700 103440 2495300 1903900 1897200 1100400 1049600 1171100 785910 1391400 5 5 3 5 5 5 5 5 5 5 5 787590 1223600 1333.6 1655100 1778300 1610900 821810 672200 764520 545810 923160 733260 1143400 70980 1657300 1680600 1622700 881840 727030 785910 538280 885630 3 3 1 3 3 3 3 3 3 3 3 401940 662960 1604.9 842820 233440 230310 209000 324080 380880 250440 529030 374260 619290 32459 837950 223320 274510 218600 322570 385220 247630 505750 2 2 2 2 2 2 2 2 2 2 2 431040000 344510000 86525000 19944 634 18323 102244;102245;102246;102247 123865;123866;123867;123868;123869 123865 662 5 VANTSTQTMGPRPAAAAAAATPAVR Unmodified 2380.2281 0.22812582 634 P11940 PABPC1 Polyadenylate-binding protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 37.695 37.549 3 2.5662E-105 10538 20211116_3429_TMUAki_TMT10x_P_F2 297.95 275.02 2204900 3651700 13179 4843500 3167500 2330800 2142000 1136200 1067300 1086400 2288100 2053000 3411900 205350 4819400 3012000 2502600 2193100 1214000 1176100 1063100 2169400 4 4 3 4 4 4 4 4 4 4 4 1215700 1942600 77.416 2754600 2394100 1608700 1384700 418290 408390 404110 1185300 1131900 1815700 114150 2735700 2270000 1682800 1427200 484940 485760 395260 1119400 2 2 1 2 2 2 2 2 2 2 2 989210 1709100 13101 2088900 773440 722030 757300 717860 658890 682270 1102700 921150 1596200 91200 2083700 741990 819770 765960 729020 690370 667810 1050000 2 2 2 2 2 2 2 2 2 2 2 156400000 113410000 42990000 19945 634 18323 102248;102249;102250;102251 123870;123871;123872;123873 123870 4 VANVPNTSLLVNIPQPTPASLK Unmodified 2272.2791 0.27908198 2129 Q86YP4;Q86YP4-2;Q86YP4-3 GATAD2A Transcriptional repressor p66-alpha yes no 0 0 0 0 By MS/MS By MS/MS 3 0 3 1 2 77.152 77.053 3 6.6173E-06 28042 20211116_3441_TMUAki_TMT10x_S_F3 83.395 74.349 3058600 5363400 97834 4420100 2600600 6077400 3550000 3379900 2914300 3008300 3753700 2848600 5001100 338340 4600700 2523400 6028400 3531600 3561400 3022400 2953400 3595100 1 1 1 1 1 1 1 1 1 1 1 3058600 5363400 97834 4420100 2600600 6077400 3550000 3379900 2914300 3008300 3753700 2848600 5001100 338340 4600700 2523400 6028400 3531600 3561400 3022400 2953400 3595100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 742090000 305270000 436820000 19946 2129 18324 102252;102253;102254 123874;123875 123875 2 VANVSLLALYK Unmodified 1189.7071 0.70705945 1344 P62266 RPS23 40S ribosomal protein S23 yes yes 0 0 0 0 By MS/MS By MS/MS 3.08 0.759 3 5 4 7 5 74.709 74.604 2;3 1.978E-17 24353 20211116_3431_TMUAki_TMT10x_P_F4 218.49 165.32 49125000 89546000 534150 76454000 69089000 84717000 54811000 70694000 59314000 57333000 67196000 45741000 83507000 4512300 79044000 65897000 85479000 56483000 72185000 60424000 56545000 64578000 12 12 9 12 12 12 12 12 12 12 12 22713000 40250000 301780 35064000 34187000 58089000 32270000 33256000 27718000 26263000 30101000 21150000 37538000 2325000 36482000 32750000 57199000 32692000 34857000 28482000 25938000 28964000 7 7 7 7 7 7 7 7 7 7 7 26412000 49296000 232370 41390000 34902000 26628000 22541000 37438000 31596000 31070000 37095000 24591000 45969000 2187300 42562000 33147000 28280000 23791000 37328000 31942000 30607000 35614000 5 5 2 5 5 5 5 5 5 5 5 9297500000 5189300000 4108200000 19947 1344 18325 102255;102256;102257;102258;102259;102260;102261;102262;102263;102264;102265;102266 123876;123877;123878;123879;123880;123881;123882;123883;123884;123885;123886;123887;123888 123882 13 VAPAPARPSGPSK Unmodified 1233.683 0.68296996 1072 P48444;P48444-2 ARCN1 Coatomer subunit delta yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 30.36 30.393 3 8.3297E-07 6156 20211116_3428_TMUAki_TMT10x_P_F1 118.76 94.509 695710 1389900 6242.2 1049400 976800 1016000 852510 894320 1104000 823440 1121100 647720 1295600 55598 1094100 933080 1034300 879020 913310 1112700 807130 1081000 2 2 1 2 2 2 2 2 2 2 2 255330 494060 6242.2 382370 472500 625510 392670 314020 378310 305730 370980 237780 460590 30027 401600 451430 615230 402030 334750 385240 298940 358100 1 1 1 1 1 1 1 1 1 1 1 440380 895820 0 667030 504290 390470 459840 580300 725710 517710 750120 409940 835040 25571 692500 481650 419110 476990 578560 727510 508200 722860 1 1 0 1 1 1 1 1 1 1 1 48893000 22719000 26175000 19948 1072 18326 102267;102268 123889;123890 123889 2 VAPAPAVVK Unmodified 850.52764 0.52763852 1358 P62424 RPL7A 60S ribosomal protein L7a yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.603 2 7 2 3 8 35.854 36.243 2 1.4761E-05 10198 20211116_3446_TMUAki_TMT10x_S_F7 151.51 71.913 5116900 9171100 44723 8369900 8672100 10009000 6362300 6912000 7059200 5652100 7208800 4764600 8554600 503230 8619800 8259200 10026000 6595900 7146300 7156300 5572000 6949400 14 14 7 14 14 14 14 14 14 14 14 3724000 6517400 27689 5879900 7175400 8778500 5078100 4935600 5026100 4058200 5112100 3467600 6079000 381250 6086800 6828900 8677800 5259000 5185800 5118600 3999600 4928800 3 3 2 3 3 3 3 3 3 3 3 1392900 2653700 17034 2490000 1496700 1231000 1284100 1976400 2033000 1593900 2096700 1297000 2475600 121980 2533000 1430300 1348500 1336900 1960400 2037700 1572400 2020700 11 11 5 11 11 11 11 11 11 11 11 476830000 389000000 87825000 19949 1358 18327 102269;102270;102271;102272;102273;102274;102275;102276;102277;102278;102279 123891;123892;123893;123894;123895;123896;123897;123898;123899;123900;123901;123902;123903;123904;123905;123906 123905 16 VAPAPAVVKK Unmodified 978.6226 0.62260154 1358 P62424 RPL7A 60S ribosomal protein L7a yes yes 0 0 0 1 By MS/MS 1 0 1 1 37.252 37.252 3 0.00078309 8871 20211116_3428_TMUAki_TMT10x_P_F1 80.688 64.017 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19950 1358 18328 102280 123907 123907 1 VAPARPPPKPR Unmodified 1184.7142 0.71421051 2552 Q96SB3 PPP1R9B Neurabin-2 yes yes 0 0 0 2 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 28.454 28.339 4 1.786E-05 5682 20211116_3431_TMUAki_TMT10x_P_F4 109.66 73.269 680620 928550 0 888780 654790 989460 624470 1165900 562990 582220 865290 633600 866290 41153 911010 626120 1005800 633110 1159000 586160 592670 825350 2 2 0 2 2 2 2 2 2 2 2 508750 658340 0 612990 459040 796780 420090 851390 394610 410980 609550 473580 614130 26662 631300 438200 801590 427360 849700 410180 419530 581350 1 1 0 1 1 1 1 1 1 1 1 171870 270210 0 275790 195760 192690 204390 314480 168380 171240 255740 160030 252150 14491 279710 187910 204160 205750 309310 175970 173140 244000 1 1 0 1 1 1 1 1 1 1 1 20893000 12750000 8143400 19951 2552 18329 102281;102282 123908;123909 123908 2 VAPEEHPTLLTEAPLNPK Unmodified 1955.0364 0.036392091 1414 P68133;P68032;P62736;P63267;P63267-2 ACTA1;ACTC1;ACTA2;ACTG2 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 58.41 58.168 3 0.032035 18916 20211116_3429_TMUAki_TMT10x_P_F2 43.408 31.262 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19952 1414 18330 102283;102284 123910;123911 123910 2 VAPEEHPVLLTEAPLNPK Unmodified 1953.0571 0.057127534 1276;1406 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS 6.2 1.39 4 5 7 6 22 45 128 6 87 136 35.342 35.451 2;3;4 3.6876E-70 16184 20211116_3445_TMUAki_TMT10x_S_F6 280.21 89.331 932710000 1591000000 12739000 1717200000 1164400000 1447900000 973450000 1153500000 1113500000 1074100000 1260100000 868470000 1485000000 77057000 1738900000 1111900000 1485000000 1001700000 1185100000 1131600000 1052300000 1211000000 265 266 108 266 266 265 265 265 265 266 265 434270000 733690000 7144000 803370000 695010000 1004900000 577470000 552840000 530720000 512830000 602800000 404370000 684870000 40935000 817660000 663610000 1001100000 590450000 583700000 544520000 502510000 579270000 116 116 51 116 116 116 116 116 116 116 116 498440000 857270000 5594500 913820000 469420000 442970000 395980000 600650000 582770000 561300000 657280000 464100000 800140000 36122000 921210000 448310000 483850000 411280000 601350000 587070000 549820000 631750000 149 150 57 150 150 149 149 149 149 150 149 830460000000 424320000000 406140000000 19953 1276;1406 18331 102285;102286;102287;102288;102289;102290;102291;102292;102293;102294;102295;102296;102297;102298;102299;102300;102301;102302;102303;102304;102305;102306;102307;102308;102309;102310;102311;102312;102313;102314;102315;102316;102317;102318;102319;102320;102321;102322;102323;102324;102325;102326;102327;102328;102329;102330;102331;102332;102333;102334;102335;102336;102337;102338;102339;102340;102341;102342;102343;102344;102345;102346;102347;102348;102349;102350;102351;102352;102353;102354;102355;102356;102357;102358;102359;102360;102361;102362;102363;102364;102365;102366;102367;102368;102369;102370;102371;102372;102373;102374;102375;102376;102377;102378;102379;102380;102381;102382;102383;102384;102385;102386;102387;102388;102389;102390;102391;102392;102393;102394;102395;102396;102397;102398;102399;102400;102401;102402;102403;102404;102405;102406;102407;102408;102409;102410;102411;102412;102413;102414;102415;102416;102417;102418;102419;102420;102421;102422;102423;102424;102425;102426;102427;102428;102429;102430;102431;102432;102433;102434;102435;102436;102437;102438;102439;102440;102441;102442;102443;102444;102445;102446;102447;102448;102449;102450;102451;102452;102453;102454;102455;102456;102457;102458;102459;102460;102461;102462;102463;102464;102465;102466;102467;102468;102469;102470;102471;102472;102473;102474;102475;102476;102477;102478;102479;102480;102481;102482;102483;102484;102485;102486;102487;102488;102489;102490;102491;102492;102493;102494;102495;102496;102497;102498;102499;102500;102501;102502;102503;102504;102505;102506;102507 123912;123913;123914;123915;123916;123917;123918;123919;123920;123921;123922;123923;123924;123925;123926;123927;123928;123929;123930;123931;123932;123933;123934;123935;123936;123937;123938;123939;123940;123941;123942;123943;123944;123945;123946;123947;123948;123949;123950;123951;123952;123953;123954;123955;123956;123957;123958;123959;123960;123961;123962;123963;123964;123965;123966;123967;123968;123969;123970;123971;123972;123973;123974;123975;123976;123977;123978;123979;123980;123981;123982;123983;123984;123985;123986;123987;123988;123989;123990;123991;123992;123993;123994;123995;123996;123997;123998;123999;124000;124001;124002;124003;124004;124005;124006;124007;124008;124009;124010;124011;124012;124013;124014;124015;124016;124017;124018;124019;124020;124021;124022;124023;124024;124025;124026;124027;124028;124029;124030;124031;124032;124033;124034;124035;124036;124037;124038;124039;124040;124041;124042;124043;124044;124045;124046;124047;124048;124049;124050;124051;124052;124053;124054;124055;124056;124057;124058;124059;124060;124061;124062;124063;124064;124065;124066;124067;124068;124069;124070;124071;124072;124073;124074;124075;124076;124077;124078;124079;124080;124081;124082;124083;124084;124085;124086;124087;124088;124089;124090;124091;124092;124093;124094;124095;124096;124097;124098;124099;124100;124101;124102;124103;124104;124105;124106;124107;124108;124109;124110;124111;124112;124113;124114;124115;124116;124117;124118;124119;124120;124121;124122;124123;124124;124125;124126;124127;124128;124129;124130;124131;124132;124133;124134;124135;124136;124137;124138;124139;124140;124141;124142;124143;124144;124145;124146;124147;124148;124149;124150;124151;124152;124153;124154;124155;124156;124157;124158;124159;124160;124161;124162;124163;124164;124165;124166;124167;124168;124169;124170;124171;124172;124173;124174;124175;124176;124177;124178;124179;124180;124181;124182;124183;124184;124185;124186;124187;124188;124189 124107 278 VAPLGEEFR Unmodified 1016.5291 0.52909508 42 CON__P15497 yes yes 0 0 0 0 By MS/MS By MS/MS 3.8 1.25 2 2 3 2 1 5 5 47.754 47.769 2;3 6.3472E-06 15321 20211116_3430_TMUAki_TMT10x_P_F3 173.28 128.89 + 28431000 46295000 248660 44916000 52071000 61765000 28750000 72716000 54746000 50675000 40827000 26473000 43193000 2715900 46171000 49344000 62129000 30723000 72720000 54015000 49994000 39816000 10 10 6 10 10 10 9 10 8 9 8 14116000 21291000 149130 20078000 40957000 48789000 16939000 33926000 29092000 21320000 19779000 13145000 19862000 1644500 20998000 38674000 47598000 18351000 34866000 28734000 20936000 19368000 5 5 4 5 5 5 4 5 4 4 4 14315000 25004000 99531 24838000 11114000 12977000 11810000 38790000 25654000 29354000 21048000 13328000 23331000 1071300 25173000 10670000 14531000 12372000 37854000 25281000 29058000 20447000 5 5 2 5 5 5 5 5 4 5 4 4250100000 2409100000 1841000000 19954 42 18332 102508;102509;102510;102511;102512;102513;102514;102515;102516;102517 124190;124191;124192;124193;124194;124195;124196;124197;124198 124191 9 VAPLGEEFREGAR Unmodified 1429.7314 0.73137672 42 CON__P15497 yes yes 0 0 0 1 By MS/MS By MS/MS 3 1.22 1 2 2 2 1 4 4 40.981 40.95 3 9.5218E-23 11749 20211116_3430_TMUAki_TMT10x_P_F3 194.3 154.14 + 13598000 21977000 137780 24467000 30419000 31933000 17431000 32284000 40634000 26564000 25800000 12661000 20516000 1351000 24896000 28840000 32078000 19079000 32635000 39796000 26179000 25347000 11 11 8 11 11 11 11 11 11 11 11 9405400 14748000 129950 17442000 25992000 28682000 14110000 22167000 27695000 18171000 17683000 8757800 13772000 1074400 17772000 24627000 28380000 15355000 22747000 27226000 17912000 17368000 8 8 6 8 8 8 8 8 8 8 8 4192800 7228800 7822.5 7024600 4427600 3250300 3320800 10117000 12938000 8392400 8117000 3903300 6744400 276620 7124200 4212700 3698300 3724000 9888300 12571000 8267600 7979400 3 3 2 3 3 3 3 3 3 3 3 3644300000 2617800000 1026400000 19955 42 18333 102518;102519;102520;102521;102522;102523;102524;102525 124199;124200;124201;124202;124203;124204;124205;124206;124207;124208;124209;124210 124201 12 VAPLMAK Oxidation (M) 744.4204 0.42039626 1 Q8NG57;Q3SY89;Q8IYF1;A6NLF2;A0A087WX78 TCEB3C;TCEB3CL;TCEB3B;TCEB3CL2 RNA polymerase II transcription factor SIII subunit A3;RNA polymerase II transcription factor SIII subunit A3-like-1;RNA polymerase II transcription factor SIII subunit A2;RNA polymerase II transcription factor SIII subunit A3-like-2 yes no 0 0 1 0 By MS/MS 3 0 1 1 29.255 28.981 3 0.03629 8632 20211116_3441_TMUAki_TMT10x_S_F3 54.765 8.3942 264360 477590 7895.4 437460 315420 316360 371240 317280 348750 343000 389250 246210 445490 29991 447310 304320 329780 372950 323310 357210 333930 374240 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 264360 477590 7895.4 437460 315420 316360 371240 317280 348750 343000 389250 246210 445490 29991 447310 304320 329780 372950 323310 357210 333930 374240 1 1 1 1 1 1 1 1 1 1 1 34725000 0 34725000 19956 1 18334 102526 124211 124211 0 1 VAPQNDSFGTQLPPMHQQQR Oxidation (M) 2294.0862 0.086212606 2408 Q96AE4-2 FUBP1 Far upstream element-binding protein 1 yes yes 0 0 1 0 By MS/MS By MS/MS 5.8 0.4 2 8 7 3 34.34 34.348 3 4.2191E-12 8666 20211116_3445_TMUAki_TMT10x_S_F6 124.84 115.19 973160 1484000 16267 1776300 2449100 2305800 1418200 1167500 1355300 1040600 1404300 906190 1385800 95800 1799300 2323200 2290700 1490500 1240700 1383300 1021500 1353200 14 14 5 14 14 14 14 14 14 14 14 937870 1419100 16267 1705700 2417100 2278800 1389500 1132800 1322500 1009000 1346400 873340 1325200 95800 1728400 2292500 2260400 1461100 1205900 1349200 990510 1298000 12 12 5 12 12 12 12 12 12 12 12 35285 64933 0 70537 32061 26965 28712 34708 32830 31616 57991 32853 60610 0 70912 30657 30332 29426 34806 34111 31006 55163 2 2 0 2 2 2 2 2 2 2 2 336220000 310360000 25855000 19957 2408 18335 102527;102528;102529;102530;102531;102532;102533;102534;102535;102536 124212;124213;124214;124215;124216;124217;124218;124219;124220;124221;124222;124223;124224;124225;124226;124227 124227 2743 16 VAPQNDSFGTQLPPMHQQQR Unmodified 2278.0913 0.091297983 2408 Q96AE4-2 FUBP1 Far upstream element-binding protein 1 yes yes 0 0 0 0 By MS/MS 7 0 2 2 42.195 42.771 3 6.3919E-11 12710 20211116_3446_TMUAki_TMT10x_S_F7 107.97 99.326 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19958 2408 18335 102537;102538 124228;124229 124228 2 VAPQNDSFGTQLPPMHQQQSR Oxidation (M) 2381.1182 0.11824102 2407 Q96AE4 FUBP1 Far upstream element-binding protein 1 yes yes 0 0 1 0 By MS/MS By MS/MS 6 0 3 2 1 36.501 36.577 3 7.7199E-14 8116 20211116_3434_TMUAki_TMT10x_P_F6 123.19 113.53 73507 92928 106.06 151000 110340 99096 68477 54342 72815 54970 101680 68442 86929 5021.1 149170 104740 103150 71782 57529 74911 53661 97196 3 3 1 3 3 3 3 3 3 3 3 28204 35874 106.06 62000 84549 68882 36238 24354 38249 25420 44519 26261 33572 3226.3 61508 79862 68747 39346 27040 39046 24782 42752 1 1 1 1 1 1 1 1 1 1 1 45303 57054 0 89003 25786 30214 32239 29989 34566 29551 57163 42180 53356 1794.9 87662 24878 34401 32436 30489 35865 28879 54444 2 2 0 2 2 2 2 2 2 2 2 24140000 13404000 10736000 19959 2407 18336 102539;102540;102541 124230;124231;124232;124233 124230 2742 4 VAPVLETSHVFCCPNR Unmodified 1884.8975 0.89747254 1977 Q6IA86;Q6IA86-5;Q6IA86-4;Q6IA86-2;Q6IA86-3;Q6IA86-6;Q6IA86-7 ELP2 Elongator complex protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 50.417 50.763 3 0.00028876 13898 20211116_3447_TMUAki_TMT10x_S_F8 74.966 63.591 31099000 65582000 307500 52407000 45839000 67651000 37889000 98965000 86768000 78128000 67428000 28957000 61145000 2859700 54623000 43757000 68682000 40361000 98417000 85446000 77162000 65644000 4 4 3 4 4 4 4 4 4 4 4 9993900 19485000 0 15952000 18541000 37043000 16633000 30276000 26509000 23910000 19317000 9303600 18168000 736690 16839000 17716000 36284000 17277000 30933000 26281000 23614000 18857000 1 1 0 1 1 1 1 1 1 1 1 21105000 46097000 307500 36455000 27298000 30608000 21255000 68689000 60259000 54218000 48110000 19653000 42977000 2123100 37784000 26041000 32398000 23084000 67484000 59165000 53548000 46786000 3 3 3 3 3 3 3 3 3 3 3 1398700000 359790000 1038900000 19960 1977 18337 102542;102543;102544 124234;124235;124236;124237 124236 4 VAPVLIR Unmodified 766.50651 0.50650915 872 P30419;P30419-2;O60551 NMT1;NMT2 Glycylpeptide N-tetradecanoyltransferase 1;Glycylpeptide N-tetradecanoyltransferase 2 yes no 0 0 0 0 By MS/MS By MS/MS 5.2 3.06 1 1 1 2 1 4 44.503 44.613 2 0.012165 13669 20211116_3446_TMUAki_TMT10x_S_F7 96.337 18.431 4883000 8033900 70267 7679500 5946000 6272100 5570800 6329400 5988700 5937300 6628100 4547100 7495100 485210 7838400 5696100 6477700 5683300 6420700 6096900 5814800 6374100 4 4 4 4 4 4 4 4 4 4 4 1249300 2206300 6389.8 2003900 2125600 2718600 1841100 1648800 1591600 1631300 1691900 1163300 2057900 121810 2069300 2031300 2701400 1874700 1729800 1633600 1594000 1629000 1 1 1 1 1 1 1 1 1 1 1 3633700 5827600 63877 5675600 3820400 3553600 3729700 4680700 4397200 4306000 4936300 3383800 5437200 363400 5769000 3664800 3776400 3808600 4690900 4463300 4220900 4745100 3 3 3 3 3 3 3 3 3 3 3 657900000 154350000 503560000 19961 872 18338 102545;102546;102547;102548;102549 124238;124239;124240;124241;124242 124241 5 VAQILKEPK Unmodified 1024.6281 0.62808085 1068 P48047 ATP5O ATP synthase subunit O, mitochondrial yes yes 0 0 0 1 By MS/MS 8 0 1 1 45.771 45.713 3 0.0027837 11888 20211116_3447_TMUAki_TMT10x_S_F8 71.03 33.919 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19962 1068 18339 102550 124243 124243 1 VAQLEQVYIR Unmodified 1217.6768 0.67682195 1355 P62318;P62318-2 SNRPD3 Small nuclear ribonucleoprotein Sm D3 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.957 1 2 2 1 3 3 56.178 56.382 2 4.1585E-14 16433 20211116_3445_TMUAki_TMT10x_S_F6 228.37 185.89 39238000 66538000 48709 72124000 51723000 59044000 42694000 55597000 58788000 50389000 53496000 36533000 62108000 3244700 72988000 49356000 60879000 44276000 56545000 58914000 49427000 51770000 5 5 1 5 5 5 5 5 5 5 5 15889000 26076000 48709 29619000 29099000 40399000 23445000 22520000 24849000 20150000 20841000 14795000 24345000 1527600 30128000 27761000 40089000 24120000 23728000 25076000 19778000 20229000 2 2 1 2 2 2 2 2 2 2 2 23349000 40462000 0 42504000 22624000 18645000 19249000 33077000 33939000 30239000 32655000 21738000 37763000 1717200 42860000 21595000 20790000 20156000 32817000 33838000 29650000 31541000 3 3 0 3 3 3 3 3 3 3 3 6191800000 2494800000 3697000000 19963 1355 18340 102551;102552;102553;102554;102555;102556 124244;124245;124246;124247;124248;124249 124248 6 VAQPGPLEPEEPR Unmodified 1417.7201 0.72014333 2491 Q96HY6;Q96HY6-2 DDRGK1 DDRGK domain-containing protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 3 1 39.129 39.067 2;3 3.4005E-14 11788 20211116_3429_TMUAki_TMT10x_P_F2 160.67 119.25 441950 789050 1578.9 915150 1410200 1315400 738660 720420 882130 601700 754510 411500 736740 50511 930690 1335300 1302000 788810 758950 886610 592550 731800 5 5 3 5 5 5 5 5 5 5 5 441950 789050 1578.9 915150 1410200 1315400 738660 720420 882130 601700 754510 411500 736740 50511 930690 1335300 1302000 788810 758950 886610 592550 731800 5 5 3 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 73034000 73034000 0 19964 2491 18341 102557;102558;102559;102560 124250;124251;124252;124253;124254;124255 124250 6 VAQPTITDNKDGTVTVR Unmodified 1813.9534 0.95339074 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 1 By MS/MS By MS/MS 5 1 1 1 1 1 40.804 40.969 3 6.6265E-36 10083 20211116_3445_TMUAki_TMT10x_S_F6 207.82 178.49 731050 1139900 4897.5 1550100 601530 506320 557790 1097500 1320800 833710 1268400 680720 1065200 63359 1536800 575970 593480 591690 1078100 1308500 825110 1225200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 731050 1139900 4897.5 1550100 601530 506320 557790 1097500 1320800 833710 1268400 680720 1065200 63359 1536800 575970 593480 591690 1078100 1308500 825110 1225200 2 2 2 2 2 2 2 2 2 2 2 112920000 0 112920000 19965 755 18342 102561;102562 124256;124257;124258 124258 3 VAQREEELEETGNQHNDVEIEEAGEEEEK Unmodified 3368.4764 0.47640999 2796 Q9H307 PNN Pinin yes yes 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 43.355 43.295 4 8.4271E-132 11277 20211116_3428_TMUAki_TMT10x_P_F1 332.94 321.55 7635200 10775000 0 20283000 8405600 7385900 5226000 2639700 5189400 3685000 7247200 7108500 10090000 571710 19827000 7975100 8213100 5466100 2954700 5353900 3555900 6927400 3 3 0 3 3 3 3 3 3 3 3 5324600 7455000 0 13778000 7836700 6727400 4522900 1788700 3669200 2474600 4968300 4957300 6980000 421230 13504000 7427300 7177300 4734600 2088400 3816200 2388600 4752500 2 2 0 2 2 2 2 2 2 2 2 2310600 3320000 0 6504300 568900 658500 703100 851040 1520200 1210400 2278900 2151300 3109800 150480 6323200 547780 1035800 731460 866320 1537700 1167300 2174900 1 1 0 1 1 1 1 1 1 1 1 1123300000 877000000 246280000 19966 2796 18343 102563;102564;102565 124259;124260;124261 124260 3 VARPLPAEEPER Unmodified 1362.7256 0.72556306 811 P26358;P26358-2 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 0 0 0 1 By MS/MS 3 0 1 1 31.207 30.954 3 6.7393E-15 9429 20211116_3441_TMUAki_TMT10x_S_F3 146.67 121.33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19967 811 18344 102566 124262 124262 1 VARPLPAEEPERAK Unmodified 1561.8576 0.85763986 811 P26358;P26358-2 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 0 0 0 2 By MS/MS 4.5 0.5 1 1 2 31.24 31.225 4 0.00015564 6875 20211116_3431_TMUAki_TMT10x_P_F4 92.269 77.108 800500 1297200 21190 1440300 2474700 1742000 1060700 916520 985190 797260 1170000 745500 1210900 109560 1463800 2338500 1737400 1147500 969940 1012100 783560 1123000 2 2 2 2 2 2 2 2 2 2 2 800500 1297200 21190 1440300 2474700 1742000 1060700 916520 985190 797260 1170000 745500 1210900 109560 1463800 2338500 1737400 1147500 969940 1012100 783560 1123000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 53425000 53425000 0 19968 811 18345 102567;102568 124263 124263 1 VASGNDHLVMLTADGDLYTLGCGEQGQLGR Oxidation (M) 3162.471 0.47101122 723 P18754;P18754-2 RCC1 Regulator of chromosome condensation yes no 0 0 1 0 By MS/MS 4 0 1 1 66.401 66.489 4 0.017909 21192 20211116_3431_TMUAki_TMT10x_P_F4 40.764 31.797 1641000 2650300 78066 2740800 1685900 3568400 2144200 2051300 2044400 2172200 2292300 1528500 2473400 209430 2802100 1632800 3550100 2147900 2165800 2093000 2116500 2203600 1 1 1 1 1 1 1 1 1 1 1 1641000 2650300 78066 2740800 1685900 3568400 2144200 2051300 2044400 2172200 2292300 1528500 2473400 209430 2802100 1632800 3550100 2147900 2165800 2093000 2116500 2203600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 949620000 949620000 0 19969 723 18346 102569 124264 124264 834 1 VASSDLVNMGISVVSYTLK Unmodified 1982.0394 0.039428559 373 O75955;O75955-2 FLOT1 Flotillin-1 yes no 0 0 0 0 By MS/MS 3 0 1 1 81.46 81.432 3 0.0040578 29801 20211116_3441_TMUAki_TMT10x_S_F3 56.017 36.439 852410 1540600 2318.1 1378400 1187200 841930 1104600 545170 517050 637650 1059000 793700 1436900 77520 1409700 1136400 884130 1106500 572040 570950 618950 1004800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 852410 1540600 2318.1 1378400 1187200 841930 1104600 545170 517050 637650 1059000 793700 1436900 77520 1409700 1136400 884130 1106500 572040 570950 618950 1004800 1 1 1 1 1 1 1 1 1 1 1 183710000 0 183710000 19970 373 18347 102570 124265 124265 1 VASVSQNAIVSAAGNIAR Unmodified 1726.9326 0.93259572 354 O75694;O75694-2 NUP155 Nuclear pore complex protein Nup155 yes no 0 0 0 0 By MS/MS By MS/MS 1.57 0.495 3 4 3 4 59.599 59.385 2;3 1.3836E-90 19447 20211116_3429_TMUAki_TMT10x_P_F2 331.7 297.83 9562600 15735000 86472 16100000 10957000 15241000 10805000 12395000 11737000 11575000 12988000 8904000 14683000 846680 16386000 10504000 15516000 10997000 12722000 11944000 11339000 12490000 6 6 3 6 6 6 6 6 6 6 6 5103600 7758000 49376 7968300 6403200 10816000 6374300 6172000 6085700 5946700 6711800 4752000 7239800 453850 8156700 6139800 10738000 6458300 6502900 6226000 5817100 6455200 3 3 1 3 3 3 3 3 3 3 3 4459000 7976600 37097 8131400 4553500 4425600 4430800 6223000 5651800 5628300 6276100 4151900 7443600 392830 8229100 4364400 4777500 4538600 6218600 5718400 5521400 6035000 3 3 2 3 3 3 3 3 3 3 3 2741700000 1812700000 928990000 19971 354 18348 102571;102572;102573;102574;102575;102576;102577 124266;124267;124268;124269;124270;124271;124272 124268 7 VATAQDDITGDGTTSNVLIIGELLK Unmodified 2543.333 0.33302762 982 P40227 CCT6A T-complex protein 1 subunit zeta yes yes 0 0 0 0 By MS/MS By MS/MS 4.03 1.49 1 4 6 8 6 3 2 13 17 80.658 80.65 2;3;4 3.9161E-113 26650 20211116_3440_TMUAki_TMT10x_S_F2 296.47 276.73 122750000 200710000 1073000 189190000 144460000 195280000 159450000 119500000 125830000 137020000 158260000 114290000 187240000 9987200 193910000 138890000 196860000 159910000 125850000 130640000 133100000 151670000 27 27 14 27 27 27 27 27 27 27 27 74767000 119540000 765380 112670000 69779000 135760000 85862000 69177000 75387000 82758000 95964000 69616000 111520000 5848800 115770000 67320000 135380000 85929000 74101000 77882000 80266000 91936000 16 16 9 16 16 16 16 16 16 16 16 47983000 81163000 307640 76522000 74684000 59525000 73588000 50325000 50447000 54262000 62299000 44675000 75717000 4138400 78139000 71569000 61481000 73984000 51750000 52754000 52833000 59731000 11 11 5 11 11 11 11 11 11 11 11 72453000000 32222000000 40231000000 19972 982 18349 102578;102579;102580;102581;102582;102583;102584;102585;102586;102587;102588;102589;102590;102591;102592;102593;102594;102595;102596;102597;102598;102599;102600;102601;102602;102603;102604;102605;102606;102607 124273;124274;124275;124276;124277;124278;124279;124280;124281;124282;124283;124284;124285;124286;124287;124288;124289;124290;124291;124292;124293;124294;124295;124296;124297;124298;124299;124300;124301;124302;124303;124304;124305;124306 124292 34 VATAYRPPALR Unmodified 1213.6931 0.69314072 2723 Q9BY44;Q9BY44-3;Q9BY44-4;Q9BY44-2 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes no 0 0 0 1 By MS/MS By MS/MS 2.5 1.12 1 1 1 1 3 1 36.64 36.527 3 0.037681 8981 20211116_3431_TMUAki_TMT10x_P_F4 50.484 28.977 9401500 8985300 9829.5 17194000 11897000 9935900 6188600 5401600 6674000 8167000 5552600 8753600 8414900 802650 16852000 11263000 10468000 6590900 5803600 6728600 7862400 5391100 3 3 2 3 3 3 3 3 3 3 3 6646400 6125000 9829.5 11329000 9548900 8386300 4564800 3808700 4482500 5393400 3759100 6188500 5734700 600840 11145000 9031200 8622000 4888300 4150900 4538100 5202200 3648600 2 2 2 2 2 2 2 2 2 2 2 2755100 2860300 0 5865300 2347900 1549700 1623800 1592900 2191500 2773500 1793500 2565100 2680200 201800 5706800 2231800 1845900 1702500 1652700 2190500 2660100 1742500 1 1 0 1 1 1 1 1 1 1 1 246060000 185780000 60281000 19973 2723 18350 102608;102609;102610;102611 124307;124308 124308 2 VATPVDWKDGDSVMVLPTIPEEEAK Oxidation (M) 2741.347 0.34696313 859 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 1 1 By matching By MS/MS 5.67 0.471 1 2 2 1 73.565 73.538 4 6.0718E-12 23425 20211116_3445_TMUAki_TMT10x_S_F6 116.94 105.73 1325500 2582100 31020 2260400 2183600 1707700 1697100 1695500 1571200 1674100 1893300 1234400 2408100 150820 2320500 2083400 1773500 1743000 1723800 1615400 1635900 1816400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1325500 2582100 31020 2260400 2183600 1707700 1697100 1695500 1571200 1674100 1893300 1234400 2408100 150820 2320500 2083400 1773500 1743000 1723800 1615400 1635900 1816400 1 1 1 1 1 1 1 1 1 1 1 2139100000 1436500000 702590000 19974 859 18351 102612;102613;102614 124309 124309 1027 1 VATVSLPR Unmodified 841.50215 0.50215205 33 CON__P00761 yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 2.69 2 2 2 2 4 4 40.247 40.476 2 0.00069124 9645 20211116_3447_TMUAki_TMT10x_S_F8 135.77 83.13 + 11782000 20847000 131770 22726000 25761000 25463000 14839000 19109000 21268000 15745000 18530000 10971000 19459000 1239200 23092000 24430000 25628000 15822000 19649000 21258000 15516000 17960000 9 9 5 9 9 9 9 9 9 9 9 6506200 11293000 117870 12961000 19940000 20879000 10340000 11043000 13132000 8710900 9854500 6058400 10544000 793560 13223000 18882000 20561000 11077000 11655000 13121000 8603600 9607700 3 3 1 3 3 3 3 3 3 3 3 5276200 9553600 13901 9764800 5820700 4583800 4498400 8065700 8136100 7034200 8675900 4912700 8915300 445590 9869300 5547900 5067500 4744700 7994000 8137100 6912500 8352600 6 6 4 6 6 6 6 6 6 6 6 1650200000 1049000000 601130000 19975 33 18352 102615;102616;102617;102618;102619;102620;102621;102622 124310;124311;124312;124313;124314;124315;124316;124317;124318;124319 124319 10 VATWFNQPAR Unmodified 1188.604 0.60399136 813 P26373;P26373-2 RPL13 60S ribosomal protein L13 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 54.034 53.756 2 1.5574E-06 17583 20211116_3430_TMUAki_TMT10x_P_F3 154.28 123.64 9401400 14321000 68163 16984000 16510000 13281000 10390000 8675000 7385000 7871700 12753000 8754100 13373000 932620 17083000 15680000 13655000 10766000 9028600 7834900 7721000 12136000 2 2 1 2 2 2 2 2 2 2 2 4129500 6162500 68163 7408700 12108000 9806700 6913800 4045600 3622700 3586700 5544300 3845500 5754900 517640 7505900 11484000 9713000 7182700 4390300 3897700 3521900 5288900 1 1 1 1 1 1 1 1 1 1 1 5271900 8158300 0 9575400 4401200 3474600 3475800 4629500 3762300 4285000 7208500 4908600 7617900 414990 9577200 4196200 3942000 3582900 4638300 3937300 4199200 6847100 1 1 0 1 1 1 1 1 1 1 1 651610000 322970000 328630000 19976 813 18353 102623;102624 124320;124321 124320 2 VATWFNQPARK Unmodified 1316.699 0.69895438 813 P26373;P26373-2 RPL13 60S ribosomal protein L13 yes no 0 0 0 1 By MS/MS By MS/MS 4 0.707 1 2 1 3 1 47.042 47.189 3 1.667E-07 13726 20211116_3442_TMUAki_TMT10x_S_F4 110.66 77.466 15422000 24719000 358850 38624000 58715000 35387000 25862000 12315000 14742000 12147000 22025000 14362000 23118000 2219400 38372000 55495000 35731000 27606000 13681000 15743000 11870000 21022000 4 4 4 4 4 4 4 4 4 4 4 15422000 24719000 358850 38624000 58715000 35387000 25862000 12315000 14742000 12147000 22025000 14362000 23118000 2219400 38372000 55495000 35731000 27606000 13681000 15743000 11870000 21022000 4 4 4 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 883620000 883620000 0 19977 813 18354 102625;102626;102627;102628 124322;124323;124324;124325;124326;124327 124327 6 VAVAIPNRPPDAVLTDTTSLNQAALYR Unmodified 2865.5349 0.53485575 1161 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 1 By MS/MS By MS/MS 3.8 3.43 3 2 3 2 69.505 69.458 3;4 1.0787E-42 21590 20211116_3447_TMUAki_TMT10x_S_F8 197.36 177.64 24144000 40653000 187480 36858000 25982000 34766000 27530000 27618000 27303000 28072000 29521000 22482000 37919000 2130800 37838000 24958000 35386000 27837000 28455000 27865000 27398000 28409000 11 11 6 11 11 11 11 11 11 11 11 12695000 21121000 56406 19051000 10469000 20812000 13248000 14279000 14464000 14755000 15123000 11820000 19700000 1021100 19607000 10108000 20946000 13330000 14862000 14685000 14391000 14569000 5 5 2 5 5 5 5 5 5 5 5 11450000 19532000 131080 17808000 15513000 13954000 14282000 13339000 12839000 13317000 14398000 10662000 18219000 1109700 18231000 14850000 14440000 14507000 13593000 13180000 13007000 13841000 6 6 4 6 6 6 6 6 6 6 6 5915200000 3853800000 2061400000 19978 1161 18355 102629;102630;102631;102632;102633 124328;124329;124330;124331;124332;124333;124334;124335;124336;124337;124338 124338 11 VAVCDIPPR Unmodified 1025.5328 0.53280025 1640;2673 Q13509;Q13509-2;Q9BUF5 TUBB3;TUBB6 Tubulin beta-3 chain;Tubulin beta-6 chain no no 0 0 0 0 By MS/MS By MS/MS 4.58 1.16 8 8 7 10 15 18 36.772 36.818 2 3.1655E-05 11038 20211116_3431_TMUAki_TMT10x_P_F4 113.5 106.28 28195000 44290000 241900 52379000 50715000 44266000 31278000 33867000 37827000 29872000 40297000 26252000 41358000 2562600 52742000 48135000 45362000 32946000 34839000 38284000 29339000 38797000 41 41 21 41 41 41 41 41 41 41 41 15138000 22914000 63833 27425000 38673000 33640000 18997000 17661000 19636000 15493000 21173000 14094000 21398000 1491200 27752000 36581000 33528000 20318000 18698000 20003000 15220000 20377000 15 15 7 15 15 15 15 15 15 15 15 13057000 21376000 178060 24954000 12042000 10626000 12281000 16206000 18191000 14379000 19124000 12158000 19960000 1071400 24990000 11554000 11834000 12627000 16141000 18281000 14119000 18420000 26 26 14 26 26 26 26 26 26 26 26 1532200000 707320000 824930000 19979 1640;2673 18356 102634;102635;102636;102637;102638;102639;102640;102641;102642;102643;102644;102645;102646;102647;102648;102649;102650;102651;102652;102653;102654;102655;102656;102657;102658;102659;102660;102661;102662;102663;102664;102665;102666 124339;124340;124341;124342;124343;124344;124345;124346;124347;124348;124349;124350;124351;124352;124353;124354;124355;124356;124357;124358;124359;124360;124361;124362;124363;124364;124365;124366;124367;124368;124369;124370;124371;124372;124373;124374;124375;124376;124377;124378;124379;124380;124381;124382;124383;124384;124385;124386;124387;124388;124389;124390;124391;124392;124393 124353 55 VAVEYLDPSPEVQK Unmodified 1572.8035 0.80353861 234 O43684;O43684-2 BUB3 Mitotic checkpoint protein BUB3 yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 61.146 61.025 3 3.0954E-14 19375 20211116_3442_TMUAki_TMT10x_S_F4 152.4 137.13 39278000 70847000 391740 66977000 49460000 67284000 45684000 63945000 57039000 52198000 57552000 36572000 66094000 3458700 68605000 47333000 68451000 46888000 64832000 57549000 51464000 55502000 7 7 4 7 7 7 7 7 7 7 7 18521000 32067000 323180 29961000 29097000 47404000 26638000 31535000 26158000 24314000 27543000 17247000 29914000 1984800 30975000 27857000 46860000 27134000 32647000 26681000 24043000 26527000 3 3 3 3 3 3 3 3 3 3 3 20758000 38781000 68561 37016000 20363000 19880000 19046000 32411000 30881000 27885000 30009000 19325000 36180000 1473800 37631000 19476000 21591000 19754000 32185000 30867000 27420000 28976000 4 4 1 4 4 4 4 4 4 4 4 3709400000 1926000000 1783400000 19980 234 18357 102667;102668;102669;102670;102671;102672 124394;124395;124396;124397;124398;124399;124400;124401 124399 8 VAVFFGGLSIK Unmodified 1136.6594 0.65938097 1665 Q13838;Q13838-2 DDX39B Spliceosome RNA helicase DDX39B yes no 0 0 0 0 By MS/MS By MS/MS 5.71 1.03 1 2 2 2 4 3 78.683 78.697 2 2.749E-16 25218 20211116_3434_TMUAki_TMT10x_P_F6 214.93 155.95 23251000 39750000 347700 36966000 27472000 41425000 31293000 24120000 22929000 27221000 30073000 21651000 37080000 2293900 37975000 26457000 41537000 31284000 25490000 23946000 26457000 28789000 5 5 4 5 5 5 5 5 5 5 5 13683000 22611000 272180 21171000 17139000 29888000 17987000 14581000 13545000 16241000 17181000 12742000 21093000 1436500 21830000 16472000 29566000 18063000 15648000 14103000 15793000 16462000 3 3 3 3 3 3 3 3 3 3 3 9568100 17139000 75521 15795000 10332000 11537000 13307000 9538500 9384700 10980000 12891000 8909300 15987000 857400 16145000 9985400 11971000 13220000 9842100 9843300 10664000 12327000 2 2 1 2 2 2 2 2 2 2 2 3355000000 1629800000 1725200000 19981 1665 18358 102673;102674;102675;102676;102677;102678;102679 124402;124403;124404;124405;124406 124404 5 VAVFFGGLSIKKDEEVLK Unmodified 1978.1139 0.11391413 1665 Q13838;Q13838-2 DDX39B Spliceosome RNA helicase DDX39B yes no 0 0 0 2 By MS/MS By MS/MS 2.8 0.748 2 2 1 2 3 74.173 74.013 4 5.3878E-31 25223 20211116_3429_TMUAki_TMT10x_P_F2 186.45 171.99 36463000 62488000 281790 52119000 41955000 60145000 43182000 41172000 43464000 46676000 44986000 33952000 58269000 3323800 54023000 40274000 60351000 43746000 42983000 44259000 45359000 43349000 6 6 5 6 6 6 6 6 6 6 6 21506000 36086000 127210 29817000 22045000 45575000 26028000 24043000 25876000 27655000 25613000 20025000 33649000 1870300 31097000 21243000 44973000 26189000 25640000 26322000 26860000 24716000 3 3 2 3 3 3 3 3 3 3 3 14956000 26402000 154570 22302000 19910000 14570000 17154000 17129000 17588000 19021000 19372000 13927000 24621000 1453400 22926000 19031000 15377000 17558000 17344000 17937000 18499000 18633000 3 3 3 3 3 3 3 3 3 3 3 3349600000 1635700000 1713800000 19982 1665 18359 102680;102681;102682;102683;102684 124407;124408;124409;124410;124411;124412 124408 6 VAVGQEQAFSVNTR Unmodified 1504.7634 0.76340513 1703 Q14315;Q14315-2 FLNC Filamin-C yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 45.066 45.22 3 9.3427E-05 12739 20211116_3433_TMUAki_TMT10x_P_F5 82.55 61.71 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19983 1703 18360 102685;102686 124413;124414 124413 2 VAVLGASGGIGQPLSLLLK Unmodified 1792.0822 0.082220072 989 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.71 1.15 2 4 11 11 13 20 21 54.152 54.164 2;3 2.4032E-103 25846 20211116_3434_TMUAki_TMT10x_P_F6 350.18 322.7 232910000 363610000 3372300 348110000 238000000 318870000 277770000 193470000 193430000 217040000 259250000 216870000 339230000 20707000 355790000 229300000 323830000 277060000 203740000 202810000 211010000 248050000 48 48 20 48 48 48 48 48 48 48 48 121920000 175500000 865040 172870000 105640000 190940000 121400000 100380000 98728000 112660000 130070000 113520000 163750000 9859900 176810000 101690000 191360000 121610000 106990000 102540000 109520000 124510000 29 29 12 29 29 29 29 29 29 29 29 110990000 188120000 2507200 175240000 132370000 127940000 156370000 93094000 94701000 104380000 129180000 103350000 175490000 10847000 178970000 127610000 132470000 155450000 96748000 100260000 101480000 123540000 19 19 8 19 19 19 19 19 19 19 19 65382000000 33429000000 31953000000 19984 989 18361 102687;102688;102689;102690;102691;102692;102693;102694;102695;102696;102697;102698;102699;102700;102701;102702;102703;102704;102705;102706;102707;102708;102709;102710;102711;102712;102713;102714;102715;102716;102717;102718;102719;102720;102721;102722;102723;102724;102725;102726;102727 124415;124416;124417;124418;124419;124420;124421;124422;124423;124424;124425;124426;124427;124428;124429;124430;124431;124432;124433;124434;124435;124436;124437;124438;124439;124440;124441;124442;124443;124444;124445;124446;124447;124448;124449;124450;124451;124452;124453;124454;124455;124456;124457;124458;124459;124460;124461;124462;124463;124464;124465;124466;124467;124468;124469;124470 124431 56 VAVQAISADEEAPDYGSGVR Unmodified 2032.9702 0.97016302 1560 Q12756;Q12756-3;Q12756-2 KIF1A Kinesin-like protein KIF1A yes no 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 53.392 53.123 3 1.7274E-07 15647 20211116_3440_TMUAki_TMT10x_S_F2 99.86 92.021 11218000 17632000 3585.7 25123000 11771000 11858000 9377200 15608000 19197000 13768000 17801000 10445000 16481000 843360 24902000 11221000 12983000 9940900 15625000 19050000 13522000 17215000 5 5 1 5 5 5 5 5 5 5 5 1693200 2566700 0 3461100 5145000 4976800 2316100 2585500 2788500 2268000 2624600 1576200 2398300 152920 3490400 4859900 4922800 2511800 2740000 2810400 2228100 2537000 1 1 0 1 1 1 1 1 1 1 1 9525100 15066000 3585.7 21662000 6626300 6881200 7061200 13022000 16409000 11500000 15176000 8868300 14083000 690440 21412000 6360800 8059800 7429100 12885000 16240000 11294000 14678000 4 4 1 4 4 4 4 4 4 4 4 468400000 181290000 287110000 19985 1560 18362 102728;102729;102730 124471;124472;124473;124474;124475 124472 5 VAVQGDVVR Unmodified 941.52943 0.52942943 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 1 1 1 1 3 1 34.481 34.372 2 0.00095455 10731 20211116_3441_TMUAki_TMT10x_S_F3 107.1 53.933 3412700 5859100 61592 5907200 6260100 7095800 4570800 4546800 5296200 4030400 4914100 3178000 5467300 370490 6040700 5963100 7098200 4747200 4736100 5342700 3957600 4752300 3 3 2 3 3 3 3 3 3 3 3 2408800 4066000 44342 4160700 5090300 6067500 3481700 3314200 3762000 2847100 3467000 2243100 3794400 268860 4266400 4842400 6001700 3624400 3494600 3804500 2799900 3353700 2 2 1 2 2 2 2 2 2 2 2 1003900 1793100 17250 1746500 1169900 1028300 1089200 1232600 1534200 1183300 1447000 934870 1673000 101630 1774300 1120700 1096500 1122800 1241400 1538200 1157700 1398600 1 1 1 1 1 1 1 1 1 1 1 154190000 100090000 54102000 19986 542 18363 102731;102732;102733;102734 124476;124477;124478 124478 3 VAVTPPGLAR Unmodified 979.58147 0.581465 842 P28331;P28331-3;P28331-4;P28331-5;P28331-2 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 0 0 0 0 By matching By MS/MS 8 0 2 1 1 42.719 42.849 2 0.00099962 10632 20211116_3447_TMUAki_TMT10x_S_F8 96.367 46.651 1127900 1953100 32589 1923500 1109200 981560 1069500 1194900 1193600 1048200 1465400 1050400 1822300 123620 1950300 1064500 1062800 1090800 1199700 1218500 1029800 1405200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1127900 1953100 32589 1923500 1109200 981560 1069500 1194900 1193600 1048200 1465400 1050400 1822300 123620 1950300 1064500 1062800 1090800 1199700 1218500 1029800 1405200 1 1 1 1 1 1 1 1 1 1 1 265990000 212210000 53784000 19987 842 18364 102735;102736 124479 124479 1 VAVVAGYGDVGK Unmodified 1133.6081 0.60807369 786 P23526;P23526-2 AHCY Adenosylhomocysteinase yes no 0 0 0 0 By MS/MS By MS/MS 5.79 0.939 1 5 4 4 9 5 51.486 51.762 2;3 6.5291E-12 14275 20211116_3444_TMUAki_TMT10x_S_F5 137.98 79.059 41151000 65438000 879880 75117000 52912000 52827000 39620000 40663000 37317000 36968000 49816000 38322000 61097000 4396300 75615000 50454000 54918000 40812000 41846000 38508000 36257000 47668000 10 10 9 10 10 10 10 10 10 10 10 16022000 24238000 255650 28912000 30667000 33645000 18532000 14959000 13886000 14251000 18045000 14920000 22634000 1771700 29235000 29116000 33563000 19289000 16131000 14478000 13947000 17278000 4 4 4 4 4 4 4 4 4 4 4 25129000 41200000 624220 46206000 22245000 19182000 21087000 25703000 23431000 22717000 31771000 23402000 38462000 2624600 46380000 21338000 21355000 21523000 25715000 24030000 22309000 30390000 6 6 5 6 6 6 6 6 6 6 6 3251000000 1861000000 1390000000 19988 786 18365 102737;102738;102739;102740;102741;102742;102743;102744;102745;102746;102747;102748;102749;102750 124480;124481;124482;124483;124484;124485;124486;124487;124488;124489;124490;124491;124492;124493;124494 124488 15 VAVVAGYGDVGKGCAQALR Unmodified 1889.9782 0.97816571 786 P23526;P23526-2 AHCY Adenosylhomocysteinase yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 50.308 50.177 3 1.4731E-50 16150 20211116_3439_TMUAki_TMT10x_S_F1 225.68 206.6 3568900 6681300 50107 4292300 8987100 11281000 5876000 15616000 12393000 10249000 8779900 3323200 6225500 397380 4652100 8540700 11158000 6324700 15497000 12194000 10231000 8581500 2 2 1 2 2 2 2 2 2 2 2 1863700 3243100 0 2066600 5822800 8650600 4472000 7813200 6221800 5121600 4331500 1735100 3021700 188870 2289800 5547900 8387800 4661000 7905600 6186000 5113000 4236900 1 1 0 1 1 1 1 1 1 1 1 1705200 3438300 50107 2225700 3164200 2630000 1404000 7802400 6171300 5127700 4448400 1588100 3203700 208500 2362200 2992800 2770600 1663800 7591800 6008500 5118200 4344500 1 1 1 1 1 1 1 1 1 1 1 821700000 504030000 317680000 19989 786 18366 102751;102752;102753 124495;124496;124497 124496 3 VAYCFEVAAQR Unmodified 1312.6234 0.62340617 2804 Q9H488;Q9H488-2 POFUT1 GDP-fucose protein O-fucosyltransferase 1 yes no 0 0 0 0 By matching By MS/MS 6.33 0.471 2 1 1 2 51.436 51.732 2 0.0040635 14525 20211116_3445_TMUAki_TMT10x_S_F6 73.067 53.969 2920200 5556500 0 4946300 3158700 2758700 2082100 5760100 5545100 5206100 4867200 2718900 5182500 242800 5056400 3001400 3012800 2275400 5688400 5465600 5107400 4716200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2920200 5556500 0 4946300 3158700 2758700 2082100 5760100 5545100 5206100 4867200 2718900 5182500 242800 5056400 3001400 3012800 2275400 5688400 5465600 5107400 4716200 1 1 0 1 1 1 1 1 1 1 1 190300000 91296000 99006000 19990 2804 18367 102754;102755;102756 124498;124499 124498 2 VAYIPDEMAAQQNPLQQPR Unmodified 2168.0684 0.068437276 86 O00425 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 64.2 64.242 3 8.5597E-24 19646 20211116_3445_TMUAki_TMT10x_S_F6 162.29 150.77 7161500 12708000 146960 12573000 8681900 11668000 8721800 9690000 8458300 8609600 9535600 6668900 11857000 723870 12822000 8332700 11898000 8836700 9919600 8654600 8453100 9165300 4 4 3 4 4 4 4 4 4 4 4 3712700 6563900 62368 6334100 4681800 8141700 4663200 4929200 4364700 4576700 5117200 3457200 6124000 351380 6505100 4490600 8110500 4721800 5163200 4480100 4484300 4913100 2 2 1 2 2 2 2 2 2 2 2 3448700 6143800 84596 6238500 4000100 3526000 4058600 4760900 4093500 4032900 4418400 3211700 5733100 372490 6317100 3842100 3787100 4114900 4756400 4174500 3968800 4252200 2 2 2 2 2 2 2 2 2 2 2 2099400000 1094200000 1005200000 19991 86 18368 102757;102758;102759;102760 124500;124501;124502;124503 124502 4 VAYVSFGPHAGK Unmodified 1231.635 0.63495714 1145 P50914 RPL14 60S ribosomal protein L14 yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 2.21 2 2 1 3 1 5 4 44.439 44.368 3 1.0883E-12 11720 20211116_3428_TMUAki_TMT10x_P_F1 176.8 156.02 13320000 20281000 80953 24308000 26699000 28979000 13849000 15698000 17126000 15187000 16820000 12403000 18939000 1355100 24583000 25281000 28936000 14821000 16616000 17268000 14854000 16235000 6 6 4 6 6 6 6 6 6 6 6 9833300 14522000 45930 17791000 23503000 26091000 11195000 11521000 12449000 11081000 12178000 9156100 13563000 1046300 18043000 22228000 25740000 12037000 12436000 12601000 10840000 11756000 4 4 3 4 4 4 4 4 4 4 4 3486600 5758900 35023 6516900 3196200 2888700 2654000 4176900 4676400 4106800 4641900 3246600 5376500 308810 6540500 3052600 3195600 2783100 4179700 4667700 4013800 4478900 2 2 1 2 2 2 2 2 2 2 2 1003800000 728230000 275530000 19992 1145 18369 102761;102762;102763;102764;102765;102766;102767;102768;102769 124504;124505;124506;124507;124508;124509;124510;124511;124512;124513 124504 10 VCADLIR Unmodified 845.44292 0.44292261 1278 P60866;P60866-2 RPS20 40S ribosomal protein S20 yes no 0 0 0 0 By MS/MS 3 0 1 1 40.729 40.784 2 0.083105 12235 20211116_3430_TMUAki_TMT10x_P_F3 61.357 16.636 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19993 1278 18370 102770 124514 124514 1 VCAHITNIPFSITK Unmodified 1599.8443 0.84429799 2949 Q9NTZ6 RBM12 RNA-binding protein 12 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 60.203 59.865 3 3.7954E-07 21127 20211116_3441_TMUAki_TMT10x_S_F3 102.73 89.527 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19994 2949 18371 102771;102772 124515;124516 124516 2 VCALLSCTSHK Unmodified 1274.6111 0.61112693 680 P15121 AKR1B1 Aldose reductase yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 44.579 44.574 3 1.2457E-11 13467 20211116_3429_TMUAki_TMT10x_P_F2 130.01 106.99 2630600 4546900 0 4825500 2490300 2125100 2115900 3194900 3292000 2752500 3796600 2449300 4243800 205100 4862700 2377700 2355500 2202200 3181100 3315500 2706400 3646800 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2630600 4546900 0 4825500 2490300 2125100 2115900 3194900 3292000 2752500 3796600 2449300 4243800 205100 4862700 2377700 2355500 2202200 3181100 3315500 2706400 3646800 2 2 0 2 2 2 2 2 2 2 2 49185000 0 49185000 19995 680 18372 102773;102774;102775 124517;124518;124519;124520 124518 4 VCALLSCTSHKDYPFHEEF Unmodified 2339.0351 0.035088237 680 P15121 AKR1B1 Aldose reductase yes yes 0 0 0 1 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 61.851 62.133 4 2.137E-06 20203 20211116_3435_TMUAki_TMT10x_P_F7 97.095 84.95 28187000 52248000 269820 36824000 43344000 69840000 40152000 57481000 43528000 53978000 46516000 26245000 48695000 2534600 39149000 41479000 68834000 40999000 58962000 44240000 52863000 44780000 8 8 4 8 8 8 8 8 8 8 8 14322000 25682000 188150 17640000 20859000 48183000 23653000 28976000 21985000 27007000 21627000 13336000 23934000 1378600 19021000 20078000 46770000 23794000 30371000 22426000 26457000 20874000 5 5 3 5 5 5 5 5 5 5 5 13865000 26566000 81669 19183000 22484000 21656000 16499000 28506000 21543000 26972000 24889000 12909000 24762000 1156000 20129000 21401000 22063000 17205000 28591000 21814000 26405000 23906000 3 3 1 3 3 3 3 3 3 3 3 6303900000 4644400000 1659400000 19996 680 18373 102776;102777;102778;102779;102780 124521;124522;124523;124524;124525;124526;124527 124523 7 VCASEKPPKDLGYIYFYQR Unmodified 2333.1514 0.15143862 1036 P45974;P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 2 By matching By MS/MS 2 0 2 1 1 58.625 58.382 4 0.0092877 17782 20211116_3440_TMUAki_TMT10x_S_F2 55.588 33.578 2310000 4864700 39936 4218100 4508100 4153800 2303400 7441500 6596600 6586400 5042800 2151100 4536900 259520 4347800 4269600 4309500 2584700 7374400 6467900 6467800 4912700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2310000 4864700 39936 4218100 4508100 4153800 2303400 7441500 6596600 6586400 5042800 2151100 4536900 259520 4347800 4269600 4309500 2584700 7374400 6467900 6467800 4912700 1 1 1 1 1 1 1 1 1 1 1 1531700000 637730000 893970000 19997 1036 18374 102781;102782 124528 124528 1 VCASVTFK Unmodified 910.45824 0.45823833 1234 P55060;P55060-3;P55060-4;P55060-2 CSE1L Exportin-2 yes no 0 0 0 0 By MS/MS By MS/MS 4.86 3.09 2 1 2 2 3 4 46.488 46.604 2 1.0525E-05 12196 20211116_3447_TMUAki_TMT10x_S_F8 203.57 150.11 35183000 52521000 217870 57676000 40034000 41744000 33027000 30753000 23472000 30128000 38519000 32759000 49027000 3016800 58236000 38212000 43262000 33571000 31803000 24831000 29451000 36692000 7 7 5 7 7 7 7 7 7 7 7 18461000 26553000 144250 29620000 22465000 28480000 15891000 15759000 12008000 16115000 19419000 17190000 24788000 1610000 29984000 21377000 28798000 16343000 16675000 12649000 15724000 18503000 3 3 2 3 3 3 3 3 3 3 3 16722000 25968000 73616 28055000 17569000 13264000 17135000 14994000 11464000 14013000 19100000 15570000 24239000 1406800 28253000 16835000 14464000 17228000 15128000 12182000 13726000 18189000 4 4 3 4 4 4 4 4 4 4 4 2739800000 1578000000 1161900000 19998 1234 18375 102783;102784;102785;102786;102787;102788;102789 124529;124530;124531;124532;124533;124534;124535 124535 7 VCDIAAELAR Unmodified 1116.5597 0.55974328 84 O00410;O00410-2;O00410-3 IPO5 Importin-5 yes no 0 0 0 0 By MS/MS 4 0 1 1 57.327 57.471 2 0.0027571 17439 20211116_3431_TMUAki_TMT10x_P_F4 81.099 47.142 6850000 9685500 104500 11456000 11112000 13833000 7366500 7938400 7614800 7479300 8178500 6378800 9044200 725000 11597000 10567000 13813000 7675700 8355000 7755900 7323600 7872100 1 1 1 1 1 1 1 1 1 1 1 6850000 9685500 104500 11456000 11112000 13833000 7366500 7938400 7614800 7479300 8178500 6378800 9044200 725000 11597000 10567000 13813000 7675700 8355000 7755900 7323600 7872100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 630910000 630910000 0 19999 84 18376 102790 124536 124536 1 VCDIILPR Unmodified 984.54264 0.54263666 2218 Q8NAV1 PRPF38A Pre-mRNA-splicing factor 38A yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 54.194 54.294 2 0.012274 16569 20211116_3433_TMUAki_TMT10x_P_F5 77.923 38.276 9553900 15551000 59461 16533000 16945000 19643000 11752000 16347000 15044000 13953000 14856000 8895900 14515000 934470 16843000 16120000 19745000 12294000 16715000 15154000 13726000 14337000 3 3 2 3 3 3 3 3 3 3 3 6366500 10459000 59461 11223000 13620000 16590000 8867500 11464000 10780000 10401000 10354000 5928300 9762600 684830 11476000 12944000 16454000 9302400 11883000 10868000 10202000 10002000 2 2 2 2 2 2 2 2 2 2 2 3187400 5091700 0 5309300 3325000 3053800 2884800 4883300 4263400 3552200 4501600 2967700 4751900 249640 5367300 3176000 3291300 2991900 4832800 4285400 3524100 4335100 1 1 0 1 1 1 1 1 1 1 1 575530000 303520000 272000000 20000 2218 18377 102791;102792;102793 124537;124538;124539;124540 124537 4 VCEDLDTSVNLAWTSGTNCTR Unmodified 2398.0529 0.052923146 1034 P45880;P45880-2;P45880-1 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 0 By MS/MS 4 0 1 1 69.088 68.91 3 1.106E-14 22592 20211116_3442_TMUAki_TMT10x_S_F4 138.49 116.33 5295900 8901800 106630 8644500 6547000 5510900 6092100 4984500 4584700 5171600 6756700 4931700 8305300 550540 8790100 6272200 5795600 6156600 5100100 4807100 5043100 6450700 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5295900 8901800 106630 8644500 6547000 5510900 6092100 4984500 4584700 5171600 6756700 4931700 8305300 550540 8790100 6272200 5795600 6156600 5100100 4807100 5043100 6450700 3 3 2 3 3 3 3 3 3 3 3 537940000 0 537940000 20001 1034 18378 102794 124541;124542;124543 124541 3 VCEEIAIIPSK Unmodified 1257.6639 0.663874 562 P08708 RPS17 40S ribosomal protein S17 yes yes 0 0 0 0 By MS/MS By MS/MS 4.83 0.687 2 3 1 1 5 61.337 61.32 2;3 0.00018414 18139 20211116_3444_TMUAki_TMT10x_S_F5 89.548 61.634 4716900 7958800 66918 7386200 5539600 5470300 4916100 7072900 6385500 6616500 6937500 4392400 7424300 464950 7546900 5300000 5726900 5064700 7096700 6451400 6480800 6675300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4716900 7958800 66918 7386200 5539600 5470300 4916100 7072900 6385500 6616500 6937500 4392400 7424300 464950 7546900 5300000 5726900 5064700 7096700 6451400 6480800 6675300 2 2 2 2 2 2 2 2 2 2 2 762590000 0 762590000 20002 562 18379 102795;102796;102797;102798;102799;102800 124544;124545;124546;124547;124548;124549 124547 6 VCEEIAIIPSKK Unmodified 1385.7588 0.75883702 562 P08708 RPS17 40S ribosomal protein S17 yes yes 0 0 0 1 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 53.525 53.846 3 1.9537E-05 14999 20211116_3434_TMUAki_TMT10x_P_F6 101.53 73.884 56456000 93968000 574870 82190000 90424000 89506000 64216000 109960000 81242000 83992000 89054000 52570000 87638000 5692100 84789000 86079000 91191000 67034000 109990000 82182000 83101000 85665000 7 7 7 7 7 7 7 7 7 7 7 12806000 21469000 245370 18200000 26580000 34816000 17068000 24478000 18926000 18748000 19909000 11926000 20020000 1483300 19046000 25262000 34211000 17867000 25238000 19208000 18547000 19175000 2 2 2 2 2 2 2 2 2 2 2 43649000 72499000 329510 63990000 63844000 54690000 47148000 85485000 62316000 65244000 69145000 40644000 67617000 4208800 65742000 60817000 56980000 49167000 84755000 62974000 64555000 66490000 5 5 5 5 5 5 5 5 5 5 5 4023900000 1860900000 2163100000 20003 562 18380 102801;102802;102803;102804;102805;102806 124550;124551;124552;124553;124554;124555;124556;124557 124551 8 VCEHLNLLEK Unmodified 1253.6438 0.64380726 220;3239 Q9Y2J2;Q9Y2J2-2;Q9Y2J2-4;Q9Y2J2-3;O43491;O43491-4;O43491-2;O43491-3 EPB41L3;EPB41L2 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed;Band 4.1-like protein 2 no no 0 0 0 0 By MS/MS 6 0 1 1 49.051 49.207 3 0.046518 13478 20211116_3445_TMUAki_TMT10x_S_F6 50.95 29.555 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20004 3239;220 18381 102807 124558 124558 1 VCEIHFHEINNK Unmodified 1538.73 0.72999651 210;2435 O43347;Q96DH6;Q96DH6-2;Q96DH6-3 MSI1;MSI2 RNA-binding protein Musashi homolog 1;RNA-binding protein Musashi homolog 2 no no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 37.987 38.001 4 7.9256E-05 9863 20211116_3433_TMUAki_TMT10x_P_F5 96.756 74.558 4299400 7192300 0 7475700 13410000 10087000 7426100 9233300 10934000 5192400 8066600 4002900 6712300 455910 7645500 12705000 10096000 7954000 9309900 10868000 5237600 7870300 2 2 0 2 2 2 2 2 2 2 2 4299400 7192300 0 7475700 13410000 10087000 7426100 9233300 10934000 5192400 8066600 4002900 6712300 455910 7645500 12705000 10096000 7954000 9309900 10868000 5237600 7870300 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 634500000 634500000 0 20005 210;2435 18382 102808;102809 124559;124560 124559 2 VCENIPIVLCGNK Unmodified 1514.7585 0.75851945 1368 P62826 RAN GTP-binding nuclear protein Ran yes yes 0 0 0 0 By MS/MS By MS/MS 6.62 1 2 4 4 3 6 7 62.526 62.795 2;3 1.1087E-22 21012 20211116_3446_TMUAki_TMT10x_S_F7 210.87 182.85 74687000 125840000 79912 142890000 97895000 122560000 81830000 87344000 76470000 84613000 98116000 69535000 117480000 5771300 144260000 93414000 125320000 83678000 90501000 78797000 82750000 93979000 14 14 3 14 14 14 14 14 14 14 14 43691000 72381000 79912 80930000 76021000 99369000 60019000 51325000 45981000 49777000 57157000 40678000 67571000 3712000 82234000 72466000 99014000 61282000 54562000 47788000 48679000 54791000 9 9 3 9 9 9 9 9 9 9 9 30996000 53458000 0 61959000 21874000 23194000 21812000 36019000 30489000 34835000 40959000 28857000 49914000 2059400 62028000 20948000 26308000 22396000 35939000 31009000 34071000 39188000 5 5 0 5 5 5 5 5 5 5 5 26595000000 15335000000 11260000000 20006 1368 18383 102810;102811;102812;102813;102814;102815;102816;102817;102818;102819;102820;102821;102822 124561;124562;124563;124564;124565;124566;124567;124568;124569;124570;124571;124572;124573;124574;124575;124576;124577 124575 17 VCENIPIVLCGNKVDIK Unmodified 1970.0329 0.032903393 1368 P62826 RAN GTP-binding nuclear protein Ran yes yes 0 0 0 1 By MS/MS By MS/MS 5.86 2.49 4 1 4 6 6 11 10 65.388 65.527 2;3;4 1.722E-29 19921 20211116_3447_TMUAki_TMT10x_S_F8 169.3 136.07 447120000 727560000 3359700 770920000 541930000 548430000 429270000 466960000 377950000 446750000 525150000 416320000 679060000 39244000 780080000 516850000 570600000 439730000 478280000 391970000 437150000 502030000 31 31 16 31 31 31 31 31 31 31 31 168030000 262140000 800080 277420000 214930000 315530000 190610000 166180000 140770000 160490000 187470000 156450000 244670000 14023000 282500000 205440000 315730000 193070000 176330000 147050000 156970000 179400000 16 16 6 16 16 16 16 16 16 16 16 279100000 465420000 2559700 493500000 326990000 232910000 238660000 300780000 237190000 286260000 337680000 259880000 434390000 25221000 497570000 311410000 254870000 246650000 301950000 244930000 280180000 322640000 15 15 10 15 15 15 15 15 15 15 15 84994000000 51102000000 33892000000 20007 1368 18384 102823;102824;102825;102826;102827;102828;102829;102830;102831;102832;102833;102834;102835;102836;102837;102838;102839;102840;102841;102842;102843 124578;124579;124580;124581;124582;124583;124584;124585;124586;124587;124588;124589;124590;124591;124592;124593;124594;124595;124596;124597;124598;124599;124600;124601;124602;124603;124604;124605;124606;124607;124608;124609;124610 124610 33 VCENIPIVLCGNKVDIKDR Unmodified 2241.161 0.16095745 1368 P62826 RAN GTP-binding nuclear protein Ran yes yes 0 0 0 2 By MS/MS By MS/MS 7.43 0.728 1 2 4 5 2 58.617 58.893 3;4 6.9661E-24 17713 20211116_3436_TMUAki_TMT10x_P_F8 175.01 157.43 51426000 91378000 840040 63038000 88542000 129450000 67995000 123260000 90069000 98306000 88916000 47887000 85159000 5299400 67304000 84415000 127640000 70728000 124880000 90623000 97039000 85810000 7 7 6 7 7 7 7 7 7 7 7 30092000 52086000 340070 35121000 56560000 101600000 49315000 72398000 52012000 57001000 51446000 28019000 48539000 2915600 38022000 54053000 98745000 50485000 74622000 52775000 56304000 49646000 4 4 3 4 4 4 4 4 4 4 4 21334000 39291000 499970 27917000 31982000 27855000 18680000 50859000 38057000 41305000 37470000 19868000 36620000 2383800 29282000 30362000 28898000 20243000 50263000 37848000 40734000 36164000 3 3 3 3 3 3 3 3 3 3 3 22885000000 12498000000 10387000000 20008 1368 18385 102844;102845;102846;102847;102848;102849;102850 124611;124612;124613;124614;124615;124616;124617;124618 124614 8 VCEPCYEQLNR Unmodified 1466.6282 0.62823356 146 O14964;O14964-2 HGS Hepatocyte growth factor-regulated tyrosine kinase substrate yes no 0 0 0 0 By MS/MS 4 0 1 1 38.869 39.05 2 2.5969E-14 10405 20211116_3442_TMUAki_TMT10x_S_F4 185.61 168.28 122700 174210 0 320610 74492 59338 80932 201660 258910 126460 220810 114220 163110 6144.7 312830 71370 79763 87266 195600 254260 126610 214180 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 122700 174210 0 320610 74492 59338 80932 201660 258910 126460 220810 114220 163110 6144.7 312830 71370 79763 87266 195600 254260 126610 214180 1 1 0 1 1 1 1 1 1 1 1 11188000 0 11188000 20009 146 18386 102851 124619 124619 1 VCEVCSAYLGLHDNDRR Unmodified 2062.9313 0.93129187 2486;2898 Q9Y383;Q96HJ9-2;Q9Y383-3;Q9Y383-2;Q9NQ29;Q9NQ29-2;Q9NQ29-3 LUC7L2;LUC7L Putative RNA-binding protein Luc7-like 2;Putative RNA-binding protein Luc7-like 1 no no 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 41.371 41.464 4 1.238E-15 10256 20211116_3445_TMUAki_TMT10x_S_F6 151.8 142.05 14167000 24215000 186400 26812000 30386000 27179000 17527000 22587000 22660000 19579000 22733000 13191000 22605000 1277300 27175000 28819000 27562000 18610000 23107000 22831000 19245000 21927000 9 9 5 9 9 9 9 9 9 9 9 8246600 14213000 142670 15558000 25263000 22320000 13122000 13219000 12539000 11111000 12988000 7679000 13267000 770820 15878000 23924000 22117000 13927000 13836000 12797000 10938000 12515000 4 4 2 4 4 4 4 4 4 4 4 5920100 10002000 43732 11255000 5123100 4858600 4405200 9368100 10122000 8468000 9745000 5512400 9337700 506440 11297000 4895900 5445500 4682900 9270300 10033000 8307400 9412300 5 5 3 5 5 5 5 5 5 5 5 3193300000 1647700000 1545600000 20010 2486;2898 18387 102852;102853;102854;102855 124620;124621;124622;124623;124624;124625;124626;124627;124628 124628 9 VCGDSDKGFVVINQK Unmodified 1664.8192 0.81920545 982 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 1 By MS/MS 6 0 1 1 49.845 49.945 3 0.0086578 13446 20211116_3434_TMUAki_TMT10x_P_F6 57.595 39.678 4377200 7999100 41265 8234800 12583000 13964000 7246500 8498300 7747300 6754800 7504000 4075900 7464900 516290 8469800 11934000 13750000 7645000 8864100 7851000 6668900 7246400 1 1 1 1 1 1 1 1 1 1 1 4377200 7999100 41265 8234800 12583000 13964000 7246500 8498300 7747300 6754800 7504000 4075900 7464900 516290 8469800 11934000 13750000 7645000 8864100 7851000 6668900 7246400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 452640000 452640000 0 20011 982 18388 102856 124629 124629 1 VCLLGCGISTGYGAAVNTAK Unmodified 2010.9867 0.98668148 631 P11766 ADH5 Alcohol dehydrogenase class-3 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 68.19 67.877 3 3.9688E-32 24432 20211116_3441_TMUAki_TMT10x_S_F3 184.22 172.53 17722000 31427000 256570 30138000 22385000 24733000 19792000 18127000 15552000 18062000 22449000 16502000 29320000 1685200 30756000 21408000 25382000 20080000 18762000 16252000 17643000 21443000 6 6 4 6 6 6 6 6 6 6 6 6481900 11513000 35696 10498000 7620700 12935000 8179700 6042600 5226600 6138400 7765700 6035000 10739000 522730 10818000 7319100 12872000 8176400 6494400 5536500 5991100 7412700 2 2 1 2 2 2 2 2 2 2 2 11240000 19914000 220880 19641000 14764000 11798000 11613000 12084000 10325000 11923000 14684000 10467000 18581000 1162500 19939000 14089000 12509000 11904000 12267000 10715000 11651000 14030000 4 4 3 4 4 4 4 4 4 4 4 4122200000 2329300000 1793000000 20012 631 18389 102857;102858;102859;102860 124630;124631;124632;124633;124634;124635 124635 6 VCNALALLQCVASHPETR Unmodified 2038.0088 0.0088139074 2346 Q92600;Q92600-3;Q92600-2 RQCD1 Cell differentiation protein RCD1 homolog yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 74.331 74.124 3 5.3262E-12 26955 20211116_3441_TMUAki_TMT10x_S_F3 124.26 99.467 2603700 4330000 0 3699700 2957800 4001800 3224300 2982600 2517400 3036400 3116200 2424100 4038000 194690 3823300 2841100 4035200 3234700 3085500 2613200 2963200 2987500 2 2 0 2 2 2 2 2 2 2 2 1503900 2384800 0 2216200 1516100 2747100 2005200 1656700 1326100 1797000 1687900 1400100 2224600 98919 2280700 1464300 2741300 1987400 1743600 1391600 1749300 1617000 1 1 0 1 1 1 1 1 1 1 1 1099900 1945200 0 1483500 1441700 1254700 1219000 1325900 1191300 1239300 1428300 1024100 1813400 95771 1542600 1376800 1293900 1247300 1341900 1221600 1213900 1370500 1 1 0 1 1 1 1 1 1 1 1 684110000 381760000 302350000 20013 2346 18390 102861;102862 124636;124637 124637 2 VCNICFDVLTLGGVS Unmodified 1652.7902 0.79021351 3068 Q9P2R3;Q9P2R3-2;Q9P2R3-4 ANKFY1 Rabankyrin-5 yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 81.795 81.817 2 0.035416 29021 20211116_3446_TMUAki_TMT10x_S_F7 49.5 37.326 1995200 3263100 0 3307000 2165100 2732800 2420600 1792400 1654300 1757200 2496000 1857500 3045000 134940 3362000 2080300 2798300 2418200 1868800 1746400 1717600 2381700 2 2 0 2 2 2 2 2 2 2 2 1033200 1815500 0 1723400 1160800 1982000 1294200 1024500 1001200 1048000 1319500 961880 1693700 74640 1768500 1115500 1981700 1296700 1090600 1042700 1022600 1263000 1 1 0 1 1 1 1 1 1 1 1 962010 1447600 0 1583600 1004300 750810 1126400 767960 653040 709130 1176500 895570 1351300 60303 1593500 964780 816640 1121500 778190 703650 695000 1118700 1 1 0 1 1 1 1 1 1 1 1 216070000 102940000 113140000 20014 3068 18391 102863;102864;102865 124638;124639 124639 2 VCNPIITK Unmodified 943.51609 0.51608756 615 P11142 HSPA8 Heat shock cognate 71 kDa protein yes yes 0 0 0 0 By MS/MS By MS/MS 5.78 2.66 2 2 2 3 4 5 45.723 45.865 2;3 0.00041201 12121 20211116_3445_TMUAki_TMT10x_S_F6 141.93 88.76 78819000 129810000 1018200 130710000 121410000 110140000 86641000 72167000 62922000 57318000 93168000 73387000 121130000 7044400 132970000 115530000 112620000 88967000 74847000 66123000 56591000 88940000 13 13 10 13 13 13 13 13 13 13 13 52435000 85661000 502270 84270000 92397000 90873000 58334000 48744000 42163000 36616000 59462000 48817000 79925000 4339400 86166000 87702000 91221000 60451000 51323000 44215000 36261000 56825000 6 6 3 6 6 6 6 6 6 6 6 26384000 44152000 515890 46438000 29009000 19268000 28306000 23423000 20759000 20702000 33706000 24570000 41207000 2705000 46807000 27829000 21398000 28516000 23524000 21909000 20330000 32115000 7 7 7 7 7 7 7 7 7 7 7 7269000000 4204000000 3065000000 20015 615 18392 102866;102867;102868;102869;102870;102871;102872;102873;102874 124640;124641;124642;124643;124644;124645;124646;124647;124648;124649;124650;124651;124652;124653 124649 14 VCNYGLTFTQK Unmodified 1329.6387 0.63872189 3228 Q9Y277;Q9Y277-2 VDAC3 Voltage-dependent anion-selective channel protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 4 2 4 2 57.032 56.958 2;3 1.8839E-14 16852 20211116_3428_TMUAki_TMT10x_P_F1 189.58 148.56 6802700 11196000 97630 12949000 12087000 13452000 8070300 7308400 6689700 7101500 8277300 6334700 10454000 728990 13094000 11495000 13534000 8353400 7734500 6922300 6944200 7935700 2 2 2 2 2 2 2 2 2 2 2 6802700 11196000 97630 12949000 12087000 13452000 8070300 7308400 6689700 7101500 8277300 6334700 10454000 728990 13094000 11495000 13534000 8353400 7734500 6922300 6944200 7935700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1059000000 850600000 208370000 20016 3228 18393 102875;102876;102877;102878;102879;102880 124654;124655;124656;124657;124658 124654 5 VCTLAIIDPGDSDIIR Unmodified 1756.9029 0.90293508 1378 P62888 RPL30 60S ribosomal protein L30 yes yes 0 0 0 0 By MS/MS By MS/MS 3.81 1.59 2 3 4 4 4 4 12 9 75.5 75.445 2;3 4.5784E-44 26420 20211116_3430_TMUAki_TMT10x_P_F3 237.87 185.08 89209000 149760000 1116400 139160000 97765000 145370000 104850000 93221000 81273000 93516000 110080000 83067000 139700000 8106200 142810000 93958000 146530000 105260000 97422000 84735000 91321000 105300000 28 28 17 28 28 28 28 28 28 28 28 58289000 96105000 772080 89397000 59519000 112540000 69313000 61168000 53808000 60514000 70897000 54277000 89651000 5283200 92020000 57344000 112070000 69315000 64764000 56025000 59128000 67863000 18 18 12 18 18 18 18 18 18 18 18 30920000 53651000 344330 49763000 38245000 32824000 35541000 32054000 27465000 33002000 39183000 28791000 50048000 2823000 50788000 36613000 34466000 35942000 32657000 28710000 32193000 37436000 10 10 5 10 10 10 10 10 10 10 10 42238000000 23143000000 19095000000 20017 1378 18394 102881;102882;102883;102884;102885;102886;102887;102888;102889;102890;102891;102892;102893;102894;102895;102896;102897;102898;102899;102900;102901 124659;124660;124661;124662;124663;124664;124665;124666;124667;124668;124669;124670;124671;124672;124673;124674;124675;124676;124677;124678;124679;124680;124681;124682;124683;124684;124685;124686;124687 124666 29 VCVETVESGAMTK Oxidation (M) 1425.648 0.64796594 1083 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 1 0 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 43.367 43.307 3 0.0019494 11810 20211116_3431_TMUAki_TMT10x_P_F4 63.989 58.266 2000600 3374000 98756 3616400 3291200 2987300 2130200 2460500 2514600 1884600 2907600 1863500 3149200 275980 3662800 3132600 3070200 2233300 2511000 2555300 1864300 2792700 2 2 2 2 2 2 2 2 2 2 2 1161800 1895600 75294 1966600 2488800 2323300 1419300 1472700 1508500 1134400 1696300 1082300 1769000 185080 2006600 2364100 2325700 1498400 1530100 1537400 1121800 1630500 1 1 1 1 1 1 1 1 1 1 1 838880 1478500 23461 1649800 802420 663990 710850 987850 1006100 750220 1211300 781260 1380200 90904 1656200 768510 744520 734970 980920 1017900 742500 1162100 1 1 1 1 1 1 1 1 1 1 1 209350000 186410000 22949000 20018 1083 18395 102902;102903;102904 124688;124689 124688 1410 2 VCYYYDGDIGNYYYGQGHPMKPHR Oxidation (M) 2968.2697 0.26973263 2362 Q92769 HDAC2 Histone deacetylase 2 yes yes 0 0 1 1 By MS/MS By MS/MS 8 0 4 2 2 47.548 47.554 4;5 2.0508E-11 13162 20211116_3436_TMUAki_TMT10x_P_F8 112.58 109.97 10154000 21097000 137870 20036000 11991000 21167000 11210000 13830000 14465000 13405000 13117000 9454600 19682000 784140 20532000 11483000 21329000 11513000 14419000 14525000 13110000 12695000 9 9 4 9 9 9 9 9 9 9 9 4629100 10947000 114960 9899000 7179400 15571000 6683200 6785800 7342900 6762600 5991700 4311000 10211000 367310 10257000 6878400 15315000 6825400 7342000 7393400 6605700 5821800 4 4 3 4 4 4 4 4 4 4 4 5524600 10150000 22914 10137000 4812100 5596600 4527300 7044200 7121700 6642400 7125400 5143700 9471000 416820 10274000 4604900 6014000 4687400 7076900 7131700 6503900 6873500 5 5 1 5 5 5 5 5 5 5 5 2857400000 1687700000 1169700000 20019 2362 18396 102905;102906;102907;102908 124690;124691;124692;124693;124694;124695;124696;124697;124698 124691 2701 9 VCYYYDGDIGNYYYGQGHPMKPHR Unmodified 2952.2748 0.27481801 2362 Q92769 HDAC2 Histone deacetylase 2 yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 49.651 49.644 4;5 1.5116E-16 13474 20211116_3447_TMUAki_TMT10x_S_F8 128.14 125.27 1950400 3431300 56152 4204600 2362700 2742800 2112800 2045900 2012400 1960000 2535100 1816400 3204700 219810 4212900 2262600 2868600 2153100 2112700 2070200 1917700 2429300 2 2 2 2 2 2 2 2 2 2 2 591460 1201500 17888 1267500 1001600 1645500 966800 867890 868880 722160 848170 550840 1121400 71451 1294100 960620 1635500 979460 917300 887490 711300 818840 1 1 1 1 1 1 1 1 1 1 1 1358900 2229800 38265 2937000 1361000 1097300 1146000 1178000 1143500 1237800 1686900 1265600 2083200 148360 2918800 1301900 1233100 1173600 1195400 1182700 1206400 1610500 1 1 1 1 1 1 1 1 1 1 1 445000000 145420000 299580000 20020 2362 18396 102909;102910 124699;124700 124700 2 VCYYYDGDVGNYYYGQGHPMKPHR Oxidation (M) 2954.2541 0.25408257 1645 Q13547 HDAC1 Histone deacetylase 1 yes yes 0 0 1 1 By MS/MS By MS/MS 8 0 2 1 1 44.901 44.964 5 0.0067564 11660 20211116_3447_TMUAki_TMT10x_S_F8 48.229 42.345 1493600 2380900 18390 2566600 1507900 1894900 1234400 2407300 2317300 2158700 2166900 1390700 2222300 123540 2595200 1439000 1983300 1300000 2414300 2304700 2118500 2095000 3 3 1 3 3 3 3 3 3 3 3 361190 638170 0 628710 665560 1017300 547860 685550 596090 578950 532160 336290 595440 31908 647870 635060 1005000 563360 710580 602040 569830 515330 1 1 0 1 1 1 1 1 1 1 1 1132400 1742700 18390 1937900 842350 877510 686580 1721800 1721200 1579700 1634700 1054400 1626900 91629 1947300 803890 978330 736600 1703700 1702600 1548700 1579600 2 2 1 2 2 2 2 2 2 2 2 393930000 239450000 154480000 20021 1645 18397 102911;102912 124701;124702;124703 124703 2215 3 VDAQFGGIDQR Unmodified 1204.5836 0.58364985 1219 P54577 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 44.381 44.231 2 3.2608E-06 13617 20211116_3430_TMUAki_TMT10x_P_F3 122.69 96.307 2304200 3754300 38383 5020100 4613600 3477100 2407000 3389000 3936700 2941900 4081600 2145200 3507900 199830 5008800 4366800 3635400 2604200 3436800 3943100 2891700 3932900 2 2 1 2 2 2 2 2 2 2 2 877190 1489500 0 1848700 3396400 2367600 1322700 1189200 1496000 1016600 1493200 816280 1391200 48692 1868400 3200600 2353500 1455400 1263400 1514200 999940 1440500 1 1 0 1 1 1 1 1 1 1 1 1427000 2264700 38383 3171300 1217200 1109500 1084300 2199900 2440700 1925400 2588300 1328900 2116600 151140 3140400 1166100 1282000 1148800 2173400 2428900 1891700 2492300 1 1 1 1 1 1 1 1 1 1 1 177160000 120260000 56900000 20022 1219 18398 102913;102914 124704;124705 124704 2 VDATEESDLAQQYGVR Unmodified 1779.8275 0.82752153 533 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 By MS/MS By MS/MS 2.08 0.828 4 4 5 6 7 54.988 54.78 2;3 1.499E-161 17500 20211116_3429_TMUAki_TMT10x_P_F2 415.92 384.73 49617000 84540000 1598200 99771000 66064000 77423000 53597000 63674000 59879000 55428000 72994000 46208000 78942000 5586500 100370000 63112000 79943000 55212000 65186000 61107000 54473000 70009000 18 18 10 18 18 18 18 18 18 18 18 22152000 35385000 492040 41014000 40446000 52861000 31537000 27091000 26713000 23793000 30635000 20629000 33039000 2458900 41620000 38581000 52541000 32305000 28746000 27526000 23374000 29431000 8 8 4 8 8 8 8 8 8 8 8 27465000 49155000 1106200 58757000 25618000 24562000 22060000 36583000 33166000 31634000 42359000 25579000 45902000 3127600 58752000 24531000 27402000 22907000 36440000 33581000 31100000 40578000 10 10 6 10 10 10 10 10 10 10 10 11503000000 7650500000 3852400000 20023 533 18399 102915;102916;102917;102918;102919;102920;102921;102922;102923;102924;102925;102926;102927 124706;124707;124708;124709;124710;124711;124712;124713;124714;124715;124716;124717;124718;124719;124720;124721;124722;124723;124724;124725 124710 20 VDAVHADVYR Unmodified 1143.5673 0.5672715 1746 Q15003;Q15003-2 NCAPH Condensin complex subunit 2 yes no 0 0 0 0 By matching By MS/MS 2.5 0.5 1 1 1 1 34.123 33.892 3 0.023876 10567 20211116_3441_TMUAki_TMT10x_S_F3 52.693 34.828 942510 1593100 9611.8 1529300 1179400 1220700 1275400 1619300 1755900 1294900 1446900 877640 1486300 90416 1560100 1133800 1271600 1303600 1616600 1754300 1278000 1405300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 942510 1593100 9611.8 1529300 1179400 1220700 1275400 1619300 1755900 1294900 1446900 877640 1486300 90416 1560100 1133800 1271600 1303600 1616600 1754300 1278000 1405300 1 1 1 1 1 1 1 1 1 1 1 43347000 15043000 28304000 20024 1746 18400 102928;102929 124726 124726 1 VDCDQHSDIAQR Unmodified 1442.6208 0.62083999 2647 Q9BS26 ERP44 Endoplasmic reticulum resident protein 44 yes yes 0 0 0 0 By MS/MS By matching 2.5 0.5 1 1 1 1 27.766 27.505 3 0.047302 6535 20211116_3429_TMUAki_TMT10x_P_F2 40.066 32.467 50563 85709 2461.2 86824 73481 106060 65727 58481 60068 69976 72163 47097 79980 6806.7 88783 70411 105790 66900 62205 61786 67868 69239 1 1 1 1 1 1 1 1 1 1 1 50563 85709 2461.2 86824 73481 106060 65727 58481 60068 69976 72163 47097 79980 6806.7 88783 70411 105790 66900 62205 61786 67868 69239 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3928600 2887500 1041100 20025 2647 18401 102930;102931 124727 124727 1 VDCTQHYELCSGNQVR Unmodified 1964.8469 0.84689354 2227 Q8NBS9;Q8NBS9-2 TXNDC5 Thioredoxin domain-containing protein 5 yes no 0 0 0 0 By MS/MS 4 0 2 2 34.819 34.843 3 8.7763E-10 8290 20211116_3431_TMUAki_TMT10x_P_F4 107.34 101.97 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20026 2227 18402 102932;102933 124728;124729 124728 2 VDDSSEDKTEFTVK Unmodified 1598.7312 0.73116153 1104 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 0 1 By MS/MS 3 0 1 1 46.423 46.421 3 0.00041521 14534 20211116_3430_TMUAki_TMT10x_P_F3 70.98 52.157 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20027 1104 18403 102934 124730 124730 1 VDEFPLCGHMVSDEYEQLSSEALEAAR Oxidation (M) 3097.3645 0.36448046 827 P27635 RPL10 60S ribosomal protein L10 yes yes 0 0 1 0 By MS/MS By MS/MS 1.88 0.781 3 3 2 4 4 64.425 64.354 3;4 2.7385E-35 25132 20211116_3428_TMUAki_TMT10x_P_F1 179.79 170.2 26586000 47657000 245200 38918000 33882000 48816000 35244000 39303000 38916000 41389000 37841000 24754000 44437000 1768400 40468000 32523000 48906000 35792000 40503000 39391000 40336000 36538000 14 14 6 14 14 14 14 14 14 14 14 10131000 18765000 54124 14337000 9894900 26104000 13514000 16059000 14751000 16448000 14582000 9432100 17493000 769710 15115000 9574400 25641000 13557000 16846000 14946000 16048000 14072000 6 6 2 6 6 6 6 6 6 6 6 16455000 28892000 191080 24581000 23987000 22712000 21730000 23244000 24165000 24941000 23260000 15322000 26943000 998740 25353000 22949000 23265000 22235000 23657000 24445000 24289000 22466000 8 8 4 8 8 8 8 8 8 8 8 18283000000 9341400000 8941500000 20028 827 18404 102935;102936;102937;102938;102939;102940;102941;102942 124731;124732;124733;124734;124735;124736;124737;124738;124739;124740;124741;124742;124743;124744 124731 995 14 VDEFPLCGHMVSDEYEQLSSEALEAAR Unmodified 3081.3696 0.36956584 827 P27635 RPL10 60S ribosomal protein L10 yes yes 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 78.251 78.224 3 3.7185E-52 25573 20211116_3428_TMUAki_TMT10x_P_F1 207.64 200.98 4220400 7287700 41739 6503900 4434300 7430900 5398200 3045500 2332500 3213800 5125600 3929800 6797200 375430 6704300 4277500 7414400 5330300 3322800 2606200 3131900 4858100 2 2 1 2 2 2 2 2 2 2 2 4220400 7287700 41739 6503900 4434300 7430900 5398200 3045500 2332500 3213800 5125600 3929800 6797200 375430 6704300 4277500 7414400 5330300 3322800 2606200 3131900 4858100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4521800000 3450100000 1071800000 20029 827 18404 102943;102944;102945;102946 124745;124746;124747 124745 3 VDENFDCVEADDVEGK Unmodified 1839.7469 0.74688795 142 O14929;O14929-2 HAT1 Histone acetyltransferase type B catalytic subunit yes no 0 0 0 0 By MS/MS 1 0 1 1 56.972 56.972 3 3.1175E-05 16908 20211116_3428_TMUAki_TMT10x_P_F1 86.488 75.218 5144000 8142900 94387 10023000 11695000 14604000 8586300 7862400 7934500 6336200 7876800 4790300 7605300 606180 10161000 11141000 14443000 8851800 8288500 8098500 6251100 7600300 2 2 2 2 2 2 2 2 2 2 2 5144000 8142900 94387 10023000 11695000 14604000 8586300 7862400 7934500 6336200 7876800 4790300 7605300 606180 10161000 11141000 14443000 8851800 8288500 8098500 6251100 7600300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 448380000 448380000 0 20030 142 18405 102947 124748;124749 124749 2 VDENHSEFTLYESR Unmodified 1724.7642 0.76419299 111 O14497;O14497-3;O14497-2 ARID1A AT-rich interactive domain-containing protein 1A yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 43.305 43.167 3 2.8297E-14 12857 20211116_3429_TMUAki_TMT10x_P_F2 153.09 137.25 4122100 6531700 64044 7678700 7924400 7811000 4937000 5900700 6119500 4935700 5758400 3838500 6099100 442380 7754500 7526300 7906200 5200700 6067000 6161000 4860300 5566100 5 5 4 5 5 5 5 5 5 5 5 2776200 4314800 52516 5003200 6850300 6778600 3971000 4059500 4104600 3398400 3819500 2585300 4028700 336170 5082000 6499200 6735000 4182700 4244900 4159800 3346300 3693300 3 3 3 3 3 3 3 3 3 3 3 1345900 2217000 11528 2675500 1074100 1032400 966030 1841200 2014900 1537400 1938900 1253200 2070400 106210 2672500 1027100 1171300 1018000 1822100 2001200 1514000 1872800 2 2 1 2 2 2 2 2 2 2 2 629420000 424540000 204870000 20031 111 18406 102948;102949;102950;102951 124750;124751;124752;124753;124754 124750 5 VDFETFLPMLQAVAK Unmodified 1707.8906 0.89057948 673 P14649 MYL6B Myosin light chain 6B yes yes 0 0 0 0 By MS/MS 2 0 1 1 82.537 82.525 3 0.0922 27496 20211116_3440_TMUAki_TMT10x_S_F2 32.932 13.093 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20032 673 18407 102952 124755 124755 1 VDFNVPMK Unmodified 948.47389 0.47388839 473 P00558;P07205 PGK1;PGK2 Phosphoglycerate kinase 1;Phosphoglycerate kinase 2 yes no 0 0 0 0 By MS/MS By matching 6.5 0.5 1 1 1 1 58.643 58.93 2 0.032213 17084 20211116_3434_TMUAki_TMT10x_P_F6 62.582 40.496 7000800 10433000 3994 13297000 17814000 13270000 10035000 5946500 5216000 5391000 8536500 6518500 9746300 735580 13362000 16886000 13355000 10437000 6398900 5635100 5288000 8132100 1 1 1 1 1 1 1 1 1 1 1 7000800 10433000 3994 13297000 17814000 13270000 10035000 5946500 5216000 5391000 8536500 6518500 9746300 735580 13362000 16886000 13355000 10437000 6398900 5635100 5288000 8132100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 752030000 431530000 320500000 20033 473 18408 102953;102954 124756 124756 1 VDFPQDQLTALTGR Unmodified 1559.7944 0.79437091 989 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.62 1 2 4 4 3 6 7 69.438 69.488 2;3 6.0534E-43 21474 20211116_3444_TMUAki_TMT10x_S_F5 259.75 223.43 102510000 163000000 1563500 175570000 123460000 153740000 115460000 102440000 100790000 108500000 128360000 95454000 152140000 9701000 177900000 118230000 156810000 117080000 106920000 104150000 105710000 122970000 25 25 17 25 25 25 25 25 25 25 25 59975000 91191000 973140 102490000 73260000 109730000 70382000 58110000 57806000 60656000 72375000 55848000 85133000 5733600 103870000 70210000 110180000 71152000 61763000 59875000 59135000 69367000 14 14 9 14 14 14 14 14 14 14 14 42534000 71808000 590350 73076000 50197000 44014000 45079000 44327000 42982000 47841000 55989000 39606000 67009000 3967400 74025000 48024000 46638000 45928000 45158000 44280000 46579000 53608000 11 11 8 11 11 11 11 11 11 11 11 21913000000 11260000000 10652000000 20034 989 18409 102955;102956;102957;102958;102959;102960;102961;102962;102963;102964;102965;102966;102967 124757;124758;124759;124760;124761;124762;124763;124764;124765;124766;124767;124768;124769;124770;124771;124772;124773;124774;124775;124776;124777;124778;124779;124780;124781;124782 124773 26 VDGEIILHLYDK Unmodified 1413.7504 0.75038083 554 P08243;P08243-2;P08243-3 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes no 0 0 0 0 By MS/MS 4 0 1 1 69.604 69.673 3 0.00092574 22444 20211116_3431_TMUAki_TMT10x_P_F4 72.705 52.042 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20035 554 18410 102968 124783 124783 1 VDGEVLR Unmodified 786.42357 0.42356738 3230 Q9Y282;Q9Y282-3 ERGIC3 Endoplasmic reticulum-Golgi intermediate compartment protein 3 yes no 0 0 0 0 By MS/MS 2 0 1 1 33.558 33.639 2 0.03159 7619 20211116_3440_TMUAki_TMT10x_S_F2 79.116 16.402 262660 439270 0 406590 280410 188890 327740 203200 239410 193120 304590 244550 409770 20146 413840 269940 206180 327230 205570 249740 189020 291810 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 262660 439270 0 406590 280410 188890 327740 203200 239410 193120 304590 244550 409770 20146 413840 269940 206180 327230 205570 249740 189020 291810 2 2 0 2 2 2 2 2 2 2 2 4143200 0 4143200 20036 3230 18411 102969 124784;124785 124784 2 VDGLLTCCSVLINK Unmodified 1590.8109 0.81094895 382 O94760;O94760-2 DDAH1 N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 73.32 73.257 3 9.2468E-24 23100 20211116_3447_TMUAki_TMT10x_S_F8 190.1 112.51 12529000 20170000 455650 22026000 14355000 21277000 14665000 13938000 12634000 14469000 15849000 11669000 18828000 1488900 22328000 13799000 21557000 14797000 14557000 13056000 14109000 15189000 3 3 3 3 3 3 3 3 3 3 3 9241400 14345000 351600 15344000 10683000 17785000 10859000 10437000 9563200 10676000 11619000 8607300 13389000 1114100 15620000 10269000 17803000 10965000 10989000 9858600 10417000 11144000 2 2 2 2 2 2 2 2 2 2 2 3287200 5825400 104050 6682200 3671100 3492000 3806400 3501300 3070900 3792900 4230200 3061500 5438900 374880 6708700 3529700 3754400 3831200 3568100 3197400 3692300 4044800 1 1 1 1 1 1 1 1 1 1 1 1666600000 945510000 721120000 20037 382 18412 102970;102971 124786;124787;124788 124788 3 VDHLTLACTPGSSPTLLR Unmodified 1937.004 0.0040461055 2499 Q96IR7 HPDL 4-hydroxyphenylpyruvate dioxygenase-like protein yes yes 0 0 0 0 By MS/MS 8 0 1 1 55.086 55.033 3 4.2737E-08 15634 20211116_3447_TMUAki_TMT10x_S_F8 103.28 89.617 4518800 7928700 139410 7556700 5249800 4754800 4291000 6783800 6587200 6212400 6446900 4208500 7397000 514800 7693500 5018100 5062300 4473700 6777800 6595900 6090900 6223400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4518800 7928700 139410 7556700 5249800 4754800 4291000 6783800 6587200 6212400 6446900 4208500 7397000 514800 7693500 5018100 5062300 4473700 6777800 6595900 6090900 6223400 2 2 2 2 2 2 2 2 2 2 2 328730000 0 328730000 20038 2499 18413 102972 124789;124790 124789 2 VDIDAPDVDVHGPDWHLK Unmodified 2026.9749 0.97485447 1555 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 0 By MS/MS 5 0.816 1 1 1 3 60.176 60.178 4 3.2155E-17 17707 20211116_3444_TMUAki_TMT10x_S_F5 142.94 115.91 9119600 15635000 19725 16702000 9467700 7826900 8564800 7995900 7404500 8306200 11243000 8491000 14593000 738390 16830000 9053900 8524700 8699000 8130400 7719800 8099500 10727000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9119600 15635000 19725 16702000 9467700 7826900 8564800 7995900 7404500 8306200 11243000 8491000 14593000 738390 16830000 9053900 8524700 8699000 8130400 7719800 8099500 10727000 2 2 1 2 2 2 2 2 2 2 2 2354300000 0 2354300000 20039 1555 18414 102973;102974;102975 124791;124792 124792 2 VDIDVPDVNIEGPDAK Unmodified 1694.8363 0.8362953 1555 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS 2 0 1 1 69.631 69.331 2 7.3139E-22 23490 20211116_3429_TMUAki_TMT10x_P_F2 159.5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20040 1555 18415 102976 124793 124793 1 VDIGDTIIYLVH Unmodified 1356.7289 0.7289171 3064 Q9P2J5;Q9P2J5-2;Q9P2J5-3 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 4.38 1.22 1 1 1 4 1 6 2 80.062 80.063 2 2.5106E-08 28254 20211116_3430_TMUAki_TMT10x_P_F3 123.92 86.441 9059700 14793000 126440 13172000 9140800 16065000 10955000 8169800 7977000 9438400 10978000 8435700 13797000 783420 13595000 8812300 16010000 10925000 8743000 8352000 9165700 10498000 4 4 3 4 4 4 4 4 4 4 4 9059700 14793000 126440 13172000 9140800 16065000 10955000 8169800 7977000 9438400 10978000 8435700 13797000 783420 13595000 8812300 16010000 10925000 8743000 8352000 9165700 10498000 4 4 3 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2980200000 2475200000 504970000 20041 3064 18416 102977;102978;102979;102980;102981;102982;102983;102984 124794;124795;124796;124797;124798;124799;124800 124795 7 VDILDPALLR Unmodified 1123.6601 0.66010926 711 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 0 0 By MS/MS By MS/MS 4.71 1.03 1 2 2 2 3 4 75.547 75.515 2 9.1994E-05 25085 20211116_3433_TMUAki_TMT10x_P_F5 124.74 105.97 27973000 45930000 273240 43704000 30453000 38528000 32874000 27400000 27215000 29906000 34094000 26047000 42850000 2602700 44665000 29277000 39319000 33043000 28495000 28178000 29104000 32677000 6 6 5 6 6 6 6 6 6 6 6 9080500 15664000 129480 14765000 9806500 17988000 10627000 9232100 9398200 10364000 11960000 8455800 14613000 883680 15174000 9431400 17929000 10698000 9862400 9705700 10075000 11458000 2 2 2 2 2 2 2 2 2 2 2 18892000 30266000 143750 28939000 20646000 20541000 22247000 18168000 17816000 19542000 22135000 17592000 28236000 1719000 29491000 19845000 21390000 22345000 18633000 18472000 19029000 21219000 4 4 3 4 4 4 4 4 4 4 4 1933500000 972510000 961030000 20042 711 18417 102985;102986;102987;102988;102989;102990;102991 124801;124802;124803;124804;124805;124806;124807;124808 124802 8 VDKGGDPALIR Unmodified 1139.6299 0.62987176 1107 P49591 SARS Serine--tRNA ligase, cytoplasmic yes yes 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 37.101 37.263 3 0.0043776 8445 20211116_3444_TMUAki_TMT10x_S_F5 66.023 46.891 693920 1162700 7484 1150900 948730 772620 897670 1173200 1225500 995920 1191300 646160 1084900 68074 1169300 908860 819430 923370 1167300 1231200 979970 1150300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 693920 1162700 7484 1150900 948730 772620 897670 1173200 1225500 995920 1191300 646160 1084900 68074 1169300 908860 819430 923370 1167300 1231200 979970 1150300 1 1 1 1 1 1 1 1 1 1 1 41747000 0 41747000 20043 1107 18418 102992;102993 124809;124810 124810 2 VDKGVVPLAGTDGETTTQGLDGLSER Unmodified 2614.3086 0.30860379 590 P09972 ALDOC Fructose-bisphosphate aldolase C yes yes 0 0 0 1 By MS/MS 5 0.816 1 1 1 3 61.145 61.136 3;4 3.3152E-12 18104 20211116_3444_TMUAki_TMT10x_S_F5 112.39 103.79 2494800 4607600 31084 3670500 3083900 3161500 2305400 5635500 4400300 4762700 4511800 2323100 4295900 244060 3803100 2939300 3307700 2444100 5578800 4388800 4687400 4348900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2494800 4607600 31084 3670500 3083900 3161500 2305400 5635500 4400300 4762700 4511800 2323100 4295900 244060 3803100 2939300 3307700 2444100 5578800 4388800 4687400 4348900 2 2 2 2 2 2 2 2 2 2 2 949740000 0 949740000 20044 590 18419 102994;102995;102996 124811;124812 124812 2 VDKGVVPLAGTNGETTTQGLDGLSER Unmodified 2613.3246 0.3245882 482 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 1 By MS/MS By MS/MS 5.11 0.737 2 4 3 5 4 57.883 57.984 3;4 4.4623E-49 17088 20211116_3445_TMUAki_TMT10x_S_F6 201.29 195.13 17217000 33855000 218710 25488000 28769000 44493000 25186000 44888000 42576000 38781000 33991000 16032000 31559000 1646100 26877000 27503000 44163000 26273000 45436000 42248000 38127000 33056000 14 14 7 14 14 14 14 14 14 14 14 10508000 20037000 175280 15696000 20303000 34751000 19262000 25096000 23482000 21632000 19269000 9785200 18681000 1112100 16605000 19448000 34009000 19724000 25900000 23555000 21270000 18718000 8 8 4 8 8 8 8 8 8 8 8 6708500 13818000 43431 9791300 8466100 9742500 5923400 19792000 19094000 17149000 14722000 6246400 12879000 534000 10272000 8055100 10154000 6549100 19536000 18693000 16857000 14337000 6 6 3 6 6 6 6 6 6 6 6 5386100000 3596000000 1790100000 20045 482 18420 102997;102998;102999;103000;103001;103002;103003;103004;103005 124813;124814;124815;124816;124817;124818;124819;124820;124821;124822;124823;124824;124825;124826 124825 14 VDLAVTRDEAAK Unmodified 1286.683 0.68302954 2983 Q9NW13;Q9NW13-2 RBM28 RNA-binding protein 28 yes no 0 0 0 1 By MS/MS 4 0 1 1 39.232 39.413 3 0.039767 10572 20211116_3442_TMUAki_TMT10x_S_F4 46.318 29.222 1008700 1697200 0 2211000 801910 688970 701610 1515500 1542000 1201400 1531200 939050 1585600 61954 2196600 765160 814330 742930 1489700 1531600 1186300 1477400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1008700 1697200 0 2211000 801910 688970 701610 1515500 1542000 1201400 1531200 939050 1585600 61954 2196600 765160 814330 742930 1489700 1531600 1186300 1477400 1 1 0 1 1 1 1 1 1 1 1 24721000 0 24721000 20046 2983 18421 103006 124827 124827 1 VDLGGFAGLFDLK Unmodified 1350.7184 0.71835242 766 P22102 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes yes 0 0 0 0 By MS/MS By MS/MS 5.75 2.8 3 1 4 4 6 6 81.251 81.259 2;3 3.5067E-25 26908 20211116_3436_TMUAki_TMT10x_P_F8 225.58 179.42 80826000 128410000 538480 125310000 79517000 110600000 83418000 67215000 65990000 76382000 93260000 75253000 119810000 6143200 127840000 76308000 112600000 83871000 70803000 68864000 74221000 89121000 11 11 6 11 11 11 11 11 11 11 11 36814000 56871000 361950 53254000 33307000 65307000 31815000 29876000 30333000 33868000 41252000 34275000 53053000 2783800 54763000 31884000 64991000 32304000 32284000 31311000 32913000 39456000 5 5 3 5 5 5 5 5 5 5 5 44012000 71541000 176530 72057000 46210000 45292000 51603000 37338000 35657000 42514000 52009000 40977000 66757000 3359400 73073000 44423000 47613000 51567000 38519000 37553000 41308000 49665000 6 6 3 6 6 6 6 6 6 6 6 9422100000 5831400000 3590700000 20047 766 18422 103007;103008;103009;103010;103011;103012;103013;103014;103015;103016;103017;103018 124828;124829;124830;124831;124832;124833;124834;124835;124836;124837;124838;124839;124840 124833 13 VDLPLAVLSK Unmodified 1053.6434 0.64339656 2822 Q9H773 DCTPP1 dCTP pyrophosphatase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 76.906 76.919 2 0.00026095 26549 20211116_3435_TMUAki_TMT10x_P_F7 115.78 84.409 68587000 113290000 1287100 108320000 80523000 80877000 79708000 38536000 28254000 39615000 64212000 63871000 105690000 7053000 110440000 77267000 83133000 79301000 41350000 32271000 38646000 60830000 3 3 3 3 3 3 3 3 3 3 3 38342000 62819000 864160 58957000 41343000 59086000 46076000 23051000 17808000 24085000 36422000 35707000 58603000 4026200 60421000 39813000 59375000 45614000 25286000 20014000 23480000 34559000 2 2 2 2 2 2 2 2 2 2 2 30245000 50471000 422890 49359000 39180000 21791000 33632000 15485000 10446000 15530000 27789000 28164000 47091000 3026800 50021000 37454000 23758000 33687000 16064000 12257000 15165000 26271000 1 1 1 1 1 1 1 1 1 1 1 2022400000 1372000000 650370000 20048 2822 18423 103019;103020;103021 124841;124842;124843 124841 3 VDLSLPNIGIK Unmodified 1167.6863 0.68632401 1506 Q03426 MVK Mevalonate kinase yes yes 0 0 0 0 By MS/MS 8 0 1 1 75.121 75.135 2 0.00061065 24407 20211116_3436_TMUAki_TMT10x_P_F8 85.67 71.463 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20049 1506 18424 103022 124844 124844 1 VDLTLDWLTETSEEAK Unmodified 1848.8993 0.89928949 1091 P49321;P49321-3;P49321-4 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 80.661 80.652 3 3.6993E-05 28008 20211116_3429_TMUAki_TMT10x_P_F2 83.54 71.564 3879500 5715700 68136 5989800 3502400 4856500 4416300 2378100 2275100 2929500 3865000 3612700 5334400 379860 6074300 3385300 4961700 4365600 2559500 2464700 2838400 3679200 2 2 2 2 2 2 2 2 2 2 2 2621400 3476500 38263 3662100 1878100 3432400 2630600 1318700 1236300 1687400 2328000 2441000 3244600 242580 3719400 1822100 3463400 2585900 1458500 1357500 1632900 2211900 1 1 1 1 1 1 1 1 1 1 1 1258200 2239200 29873 2327800 1624200 1424100 1785700 1059300 1038800 1242100 1537000 1171700 2089700 137280 2354900 1563200 1498300 1779800 1100900 1107200 1205600 1467200 1 1 1 1 1 1 1 1 1 1 1 1507300000 1186600000 320650000 20050 1091 18425 103023;103024;103025 124845;124846 124845 2 VDLVDENFTELRGEIAGPPDTPYEGGR Unmodified 2945.4043 0.40429509 1293 P61086;P61086-3 UBE2K Ubiquitin-conjugating enzyme E2 K yes no 0 0 0 1 By MS/MS 1 0 1 1 76.709 76.646 3 1.7352E-18 26878 20211116_3439_TMUAki_TMT10x_S_F1 139.16 123.04 3398400 5634600 30467 6017200 4878000 3912900 4418700 3146100 3453000 3373800 4354400 3164500 5259100 330870 6080000 4667500 4098800 4476200 3244200 3587100 3285600 4172600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3398400 5634600 30467 6017200 4878000 3912900 4418700 3146100 3453000 3373800 4354400 3164500 5259100 330870 6080000 4667500 4098800 4476200 3244200 3587100 3285600 4172600 1 1 1 1 1 1 1 1 1 1 1 594840000 0 594840000 20051 1293 18426 103026 124847 124847 1 VDNDENEHQLSLR Unmodified 1567.7227 0.72266253 524 P06748;P06748-3;P06748-2 NPM1 Nucleophosmin yes no 0 0 0 0 By MS/MS By MS/MS 2.2 1.17 2 1 1 1 3 2 33.315 33.23 3 5.2319E-54 8747 20211116_3429_TMUAki_TMT10x_P_F2 307.01 263.22 3992200 6098700 43452 7610000 11775000 6947100 5221400 3858100 4832100 3492900 5985700 3717200 5696400 450210 7646800 11127000 7048700 5626900 4067600 4973800 3426400 5738400 5 5 4 5 5 5 5 5 5 5 5 2837900 4201400 36675 5324900 10833000 5939400 3914600 2761400 3418300 2459600 4234200 2642400 3924600 351170 5362100 10214000 5941400 4317100 2959000 3528200 2414600 4059300 3 3 2 3 3 3 3 3 3 3 3 1154300 1897300 6776.3 2285100 941900 1007600 1306900 1096700 1413800 1033300 1751500 1074800 1771800 99040 2284700 912720 1107300 1309800 1108600 1445600 1011800 1679100 2 2 2 2 2 2 2 2 2 2 2 1864000000 1419400000 444550000 20052 524 18427 103027;103028;103029;103030;103031 124848;124849;124850;124851;124852 124849 5 VDNIQAGELTEGIWR Unmodified 1699.8529 0.85294842 1550 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 70.065 70.135 2 9.277E-23 22633 20211116_3431_TMUAki_TMT10x_P_F4 164.88 136.68 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20053 1550 18428 103032 124853 124853 1 VDNLTYR Unmodified 879.44503 0.4450311 1479;2639 Q9BRL6;Q9BRL6-2;Q01130;Q01130-2 SRSF8;SRSF2 Serine/arginine-rich splicing factor 8;Serine/arginine-rich splicing factor 2 no no 0 0 0 0 By MS/MS By MS/MS 3.25 0.829 1 1 2 1 3 36.681 36.571 2 0.0055512 9008 20211116_3431_TMUAki_TMT10x_P_F4 107.9 56.93 2930800 4667800 0 4683700 4081900 3796700 3249700 2655000 2746400 2490400 3742900 2728600 4355600 233140 4763700 3891300 3896900 3324200 2752200 2851400 2439100 3579800 2 2 0 2 2 2 2 2 2 2 2 1759900 2787000 0 2754000 2960400 2874200 1957600 1451100 1576500 1421500 2213900 1638600 2600400 161290 2813700 2813300 2888700 2026300 1546300 1643100 1389500 2115900 1 1 0 1 1 1 1 1 1 1 1 1170900 1880800 0 1929600 1121400 922510 1292100 1204000 1169900 1069000 1529000 1090000 1755100 71852 1950000 1078000 1008200 1297900 1205800 1208300 1049600 1463900 1 1 0 1 1 1 1 1 1 1 1 119220000 85496000 33723000 20054 2639;1479 18429 103033;103034;103035;103036 124854;124855;124856;124857 124854 4 VDPALFPPVPLFTAVPSR Unmodified 1922.0666 0.066570008 1660 Q13724;Q13724-2 MOGS Mannosyl-oligosaccharide glucosidase yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 80.938 80.911 3 7.3246E-07 29651 20211116_3441_TMUAki_TMT10x_S_F3 89.846 77.054 1691000 2385600 0 3044100 1560700 2723400 2030400 1355800 1381800 1479400 2029800 1574300 2228500 122140 3054200 1507200 2763500 2014900 1451200 1457100 1439700 1938000 1 1 0 1 1 1 1 1 1 1 1 1691000 2385600 0 3044100 1560700 2723400 2030400 1355800 1381800 1479400 2029800 1574300 2228500 122140 3054200 1507200 2763500 2014900 1451200 1457100 1439700 1938000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 790290000 790290000 0 20055 1660 18430 103037;103038;103039 124858;124859 124859 2 VDPVNFK Unmodified 817.4334 0.43340378 36 CON__P01966;P69905;P02008 HBA1;HBZ Hemoglobin subunit alpha;Hemoglobin subunit zeta yes no 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 49.135 49.302 2 0.0041712 14354 20211116_3433_TMUAki_TMT10x_P_F5 114.78 62.1 + 9657800 15601000 115710 16405000 22742000 24487000 16035000 32471000 35862000 29507000 22392000 8993200 14560000 1084700 16800000 21644000 24627000 17229000 32522000 35138000 28940000 22018000 4 4 3 4 4 4 4 4 4 4 4 5040900 7651700 25625 8088600 16873000 19655000 9678400 16634000 18434000 15220000 11186000 4693700 7141400 600440 8393800 15999000 19242000 10464000 17023000 18113000 14923000 11015000 2 2 1 2 2 2 2 2 2 2 2 4616900 7949100 90083 8316600 5868400 4832200 6356500 15837000 17428000 14287000 11206000 4299400 7418800 484250 8406300 5644600 5385000 6764900 15500000 17024000 14017000 11003000 2 2 2 2 2 2 2 2 2 2 2 881720000 507710000 374020000 20056 36 18431 103040;103041;103042;103043;103044 124860;124861;124862;124863;124864 124861 5 VDQFDPFTVPTISFICR Unmodified 2040.9979 0.9978981 1108 P49642 PRIM1 DNA primase small subunit yes yes 0 0 0 0 By MS/MS By MS/MS 6.6 2.8 1 4 4 1 80.734 80.736 2;3 1.072E-50 26717 20211116_3436_TMUAki_TMT10x_P_F8 230.36 207.13 3933800 6625500 64093 6436100 4666900 5671400 4774100 3668800 3733100 4210400 4967800 3663000 6181600 363250 6567800 4479300 5779800 4804700 3847400 3887100 4089700 4754100 4 4 2 4 4 4 4 4 4 4 4 2070000 3168700 22261 3069600 1751200 3084000 2058000 1554300 1662700 1804600 2270400 1927400 2956400 167060 3138700 1686900 3106500 2059200 1665000 1730400 1752200 2171300 2 2 1 2 2 2 2 2 2 2 2 1863800 3456800 41832 3366500 2915600 2587400 2716100 2114500 2070300 2405700 2697500 1735600 3225200 196190 3429100 2792400 2673300 2745500 2182400 2156700 2337500 2582700 2 2 1 2 2 2 2 2 2 2 2 2812700000 2039700000 773010000 20057 1108 18432 103045;103046;103047;103048;103049 124865;124866;124867;124868;124869;124870 124868 6 VDQSILTGESVSVIK Unmodified 1573.8563 0.85630246 697 P16615;P16615-5;P16615-2;P16615-3;O14983;O14983-3;O14983-2 ATP2A2;ATP2A1 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.11 0.737 2 4 3 4 5 67.382 67.354 2;3 8.4028E-42 20656 20211116_3444_TMUAki_TMT10x_S_F5 236.92 202.2 32170000 54223000 231700 53728000 36835000 46199000 36192000 35502000 34849000 36172000 41012000 29954000 50594000 2718500 54733000 35302000 47288000 36703000 36656000 35730000 35300000 39372000 9 9 6 9 9 9 9 9 9 9 9 14284000 23058000 48671 22895000 18251000 28982000 18932000 14773000 14789000 15167000 17336000 13298000 21515000 1083700 23459000 17506000 28830000 19039000 15749000 15317000 14797000 16645000 4 4 2 4 4 4 4 4 4 4 4 17887000 31165000 183030 30832000 18585000 17217000 17260000 20729000 20060000 21005000 23676000 16656000 29079000 1634800 31274000 17796000 18458000 17664000 20907000 20413000 20503000 22727000 5 5 4 5 5 5 5 5 5 5 5 3090800000 1260800000 1830000000 20058 697 18433 103050;103051;103052;103053;103054;103055;103056;103057;103058 124871;124872;124873;124874;124875;124876;124877;124878;124879;124880;124881;124882;124883 124881 13 VDREQLVQK Acetyl (Protein N-term) 1155.6248 0.62478638 1331 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 1 0 0 1 By MS/MS By MS/MS 2.43 1.18 2 2 1 2 3 4 37.98 37.924 2 1.1512E-06 9339 20211116_3428_TMUAki_TMT10x_P_F1 106.36 68.711 5881100 9398100 12325 10538000 12916000 9318800 7466200 6734400 7797900 5637200 8593100 5475400 8773600 523350 10651000 12244000 9510500 7868600 6944600 7946700 5550800 8264900 8 8 3 8 8 8 8 8 8 8 8 3359500 5178600 4761.4 5905700 10017000 7185900 4425200 3961400 4489900 3221500 4870300 3127600 4834900 315710 5992600 9460900 7169100 4783100 4168300 4578400 3176800 4686400 3 3 1 3 3 3 3 3 3 3 3 2521600 4219400 7563.8 4632000 2899000 2132900 3041000 2772900 3307900 2415700 3722800 2347800 3938700 207640 4658800 2782800 2341400 3085500 2776300 3368300 2374000 3578400 5 5 2 5 5 5 5 5 5 5 5 1046600000 662780000 383810000 20059 1331 18434 103059;103060;103061;103062;103063;103064;103065 124884;124885;124886;124887;124888;124889;124890;124891 124884 8 VDRQPSGDSGLAAETSAISQVPR Unmodified 2340.167 0.16696535 1899 Q4VC05-2 yes yes 0 0 0 1 By MS/MS 4 0 1 1 47.05 47.24 3 1.5429E-69 13668 20211116_3442_TMUAki_TMT10x_S_F4 251.34 217.04 834550 1564200 0 1760200 629080 612180 514300 2114300 1312400 1619300 1313600 777050 1460300 65751 1764700 600270 728220 552380 2059000 1300200 1601900 1267100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 834550 1564200 0 1760200 629080 612180 514300 2114300 1312400 1619300 1313600 777050 1460300 65751 1764700 600270 728220 552380 2059000 1300200 1601900 1267100 1 1 0 1 1 1 1 1 1 1 1 189140000 0 189140000 20060 1899 18435 103066 124892 124892 1 VDSAATSGYEIGNPPDYR Unmodified 1910.8646 0.86463532 794 P24666;P24666-4 ACP1 Low molecular weight phosphotyrosine protein phosphatase yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 50.508 50.565 3 1.935E-12 15097 20211116_3442_TMUAki_TMT10x_S_F4 134.93 120.37 6443100 10798000 56806 12759000 9655300 10300000 6775900 9849100 9988000 8181500 9590300 5999200 10083000 586750 12841000 9186100 10634000 7123000 9986700 10006000 8059100 9263700 5 5 4 5 5 5 5 5 5 5 5 2706300 4541300 22108 5471600 6413700 7346700 4189300 4269200 4275100 3373300 3956900 2519600 4241000 251540 5544200 6092200 7299500 4368300 4469200 4334100 3331500 3826900 2 2 1 2 2 2 2 2 2 2 2 3736800 6256500 34698 7287300 3241600 2952900 2586600 5579900 5712900 4808100 5633400 3479600 5841800 335210 7296600 3093900 3334600 2754700 5517500 5672300 4727700 5436800 3 3 3 3 3 3 3 3 3 3 3 897790000 749680000 148110000 20061 794 18436 103067;103068;103069;103070 124893;124894;124895;124896;124897;124898 124897 6 VDSGYRVHEELR Unmodified 1458.7215 0.72154031 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 1 By MS/MS 4 0 1 1 30.985 31.019 4 3.296E-09 6782 20211116_3431_TMUAki_TMT10x_P_F4 153.81 132.91 358770 550670 0 438090 496000 649100 397430 618200 389420 1439000 455120 334010 513420 25521 458030 472710 647550 408030 654670 398850 1371600 437000 1 1 0 1 1 1 1 1 1 1 1 358770 550670 0 438090 496000 649100 397430 618200 389420 1439000 455120 334010 513420 25521 458030 472710 647550 408030 654670 398850 1371600 437000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24255000 24255000 0 20062 1730 18437 103071 124899 124899 1 VDSLLENLEK Unmodified 1158.6132 0.61321864 545 P07910-2;P07910-4;P07910;P07910-3;O60812;B7ZW38;B2RXH8;P0DMR1 HNRNPC;HNRNPCL1;HNRNPCL3;HNRNPCL2;HNRNPCL4 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2;Heterogeneous nuclear ribonucleoprotein C-like 4 yes no 0 0 0 0 By MS/MS By matching 3.67 0.471 1 2 2 1 74.709 74.672 2 0.0028571 26185 20211116_3430_TMUAki_TMT10x_P_F3 78.136 33.156 15027000 23271000 1257000 24639000 16560000 31842000 18002000 18479000 17035000 18825000 20283000 14001000 21720000 2438800 25147000 15991000 31694000 18155000 19473000 17488000 18371000 19466000 1 1 1 1 1 1 1 1 1 1 1 15027000 23271000 1257000 24639000 16560000 31842000 18002000 18479000 17035000 18825000 20283000 14001000 21720000 2438800 25147000 15991000 31694000 18155000 19473000 17488000 18371000 19466000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 919660000 450260000 469410000 20063 545 18438 103072;103073;103074 124900;124901 124900 2 VDSPVTVCGDIHGQFYDLK Unmodified 2149.015 0.015004722 1273 P60510 PPP4C Serine/threonine-protein phosphatase 4 catalytic subunit yes yes 0 0 0 0 By MS/MS 6 0 1 1 62.722 62.701 3 1.4562E-10 19053 20211116_3445_TMUAki_TMT10x_S_F6 112.16 86.013 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20064 1273 18439 103075 124902 124902 1 VDTILEFSQNMNTK Oxidation (M) 1654.7872 0.78723662 153 O14980 XPO1 Exportin-1 yes yes 0 0 1 0 By MS/MS 6 0 1 1 67.957 67.931 3 0.00024838 20769 20211116_3434_TMUAki_TMT10x_P_F6 81.185 67.523 7461500 12003000 204430 11784000 9710200 18068000 10043000 11088000 11335000 10771000 10886000 6948900 11199000 840620 12131000 9331300 17862000 10209000 11616000 11459000 10532000 10515000 2 2 2 2 2 2 2 2 2 2 2 7461500 12003000 204430 11784000 9710200 18068000 10043000 11088000 11335000 10771000 10886000 6948900 11199000 840620 12131000 9331300 17862000 10209000 11616000 11459000 10532000 10515000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 763910000 763910000 0 20065 153 18440 103076 124903;124904 124904 119 2 VDVAVNCAGIAVASK Unmodified 1472.7657 0.76571331 2598 Q99714;Q99714-2 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 0 0 0 0 By MS/MS By MS/MS 7.2 0.4 4 1 2 3 59.197 59.696 2;3 6.0788E-19 19283 20211116_3435_TMUAki_TMT10x_P_F7 163.27 136.17 29614000 48374000 13688 50011000 33782000 36779000 31304000 28937000 25239000 28175000 34182000 27572000 45145000 2307600 50706000 32316000 38108000 31695000 29794000 26259000 27549000 32697000 5 5 2 5 5 5 5 5 5 5 5 12865000 20842000 0 21436000 15963000 21381000 14835000 10965000 9319000 10719000 13856000 11977000 19450000 918600 21826000 15266000 21551000 14936000 11666000 9882800 10479000 13226000 2 2 0 2 2 2 2 2 2 2 2 16748000 27532000 13688 28574000 17819000 15398000 16470000 17973000 15920000 17456000 20326000 15594000 25694000 1389000 28880000 17050000 16557000 16759000 18128000 16377000 17070000 19471000 3 3 2 3 3 3 3 3 3 3 3 2285700000 1191400000 1094300000 20066 2598 18441 103077;103078;103079;103080;103081 124905;124906;124907;124908;124909 124906 5 VDVEALENSAGATYIR Unmodified 1706.8475 0.84752869 381 O76094;O76094-2 SRP72 Signal recognition particle subunit SRP72 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 4 1 3 67.544 67.125 2;3 1.228E-29 23113 20211116_3430_TMUAki_TMT10x_P_F3 169.55 138.48 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20067 381 18442 103082;103083;103084;103085 124910;124911;124912;124913 124910 4 VDVFREDLCTK Unmodified 1380.6708 0.6707503 1527 Q06323;Q06323-2;Q06323-3 PSME1 Proteasome activator complex subunit 1 yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 53.404 53.585 3 0.00012827 15829 20211116_3431_TMUAki_TMT10x_P_F4 96.464 57.245 12901000 19418000 450000 27043000 26309000 28812000 16058000 14527000 14413000 13764000 17219000 12015000 18148000 1676800 27076000 24996000 28922000 16774000 15468000 14834000 13475000 16524000 2 2 2 2 2 2 2 2 2 2 2 12901000 19418000 450000 27043000 26309000 28812000 16058000 14527000 14413000 13764000 17219000 12015000 18148000 1676800 27076000 24996000 28922000 16774000 15468000 14834000 13475000 16524000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 838850000 838850000 0 20068 1527 18443 103086;103087 124914;124915 124914 2 VDVFTNLGYR Unmodified 1182.6033 0.60332266 2119 Q86W42;Q86W42-3;Q86W42-2 THOC6 THO complex subunit 6 homolog yes no 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 64.556 64.963 2 0.055078 20205 20211116_3436_TMUAki_TMT10x_P_F8 54.539 34.058 4009300 7091800 114440 6209900 4575900 9875300 5284100 5564100 5462100 5184000 5542600 3733900 6614100 446990 6452300 4412300 9737400 5328400 5863400 5551800 5078600 5344300 1 1 1 1 1 1 1 1 1 1 1 4009300 7091800 114440 6209900 4575900 9875300 5284100 5564100 5462100 5184000 5542600 3733900 6614100 446990 6452300 4412300 9737400 5328400 5863400 5551800 5078600 5344300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 718170000 718170000 0 20069 2119 18444 103088;103089 124916 124916 1 VDVGKDQEFTVK Unmodified 1363.6983 0.69834526 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 1 By MS/MS 5 0 1 1 48.193 48.364 3 0.077472 13978 20211116_3433_TMUAki_TMT10x_P_F5 38.357 24.587 2552500 3871900 72272 4819400 7147700 5699400 3401900 2763400 2915400 2804900 3604100 2377200 3616400 343340 4862900 6763800 5686000 3631500 2959000 3011600 2737700 3455400 1 1 1 1 1 1 1 1 1 1 1 2552500 3871900 72272 4819400 7147700 5699400 3401900 2763400 2915400 2804900 3604100 2377200 3616400 343340 4862900 6763800 5686000 3631500 2959000 3011600 2737700 3455400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 178550000 178550000 0 20070 755 18445 103090 124917 124917 1 VDVTEQPGLSGR Unmodified 1256.6361 0.63607935 2799 Q9H3N1 TMX1 Thioredoxin-related transmembrane protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 37.17 37.256 2 5.127E-07 10367 20211116_3442_TMUAki_TMT10x_S_F4 127.51 100.42 402900 672510 10296 783860 697170 555020 505270 342370 441190 380680 514060 375180 627940 42528 788380 663980 574760 520570 359980 454220 370210 493640 5 5 3 5 5 5 5 5 5 5 5 212210 318380 10296 398900 523900 387510 290220 153720 211400 175080 247250 197630 297380 27799 401080 496850 390210 304160 168730 219790 170110 237400 4 4 3 4 4 4 4 4 4 4 4 190700 354140 0 384970 173270 167510 215050 188650 229790 205600 266810 177550 330560 14729 387300 167140 184540 216400 191250 234440 200100 256240 1 1 0 1 1 1 1 1 1 1 1 20988000 5856900 15131000 20071 2799 18446 103091;103092 124918;124919;124920;124921;124922 124922 5 VDYSGGFEPFSVLR Unmodified 1571.762 0.76200815 1130 P49959;P49959-2;P49959-3 MRE11A Double-strand break repair protein MRE11A yes no 0 0 0 0 By MS/MS 7 0 2 2 77.168 77.235 2 5.2481E-20 27111 20211116_3446_TMUAki_TMT10x_S_F7 161.93 140.47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20072 1130 18447 103093;103094 124923;124924 124924 2 VEAAEIVEGEDSAYSVR Unmodified 1822.8585 0.85848731 1703 Q14315;Q14315-2 FLNC Filamin-C yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 58.687 58.687 3 5.451E-10 19576 20211116_3439_TMUAki_TMT10x_S_F1 109.04 88.378 2982100 4147700 24593 3972800 3490500 6237000 3307900 3867700 3563400 3813700 3905400 2776800 3869600 277280 4099100 3343800 6160900 3372800 4050400 3626100 3726900 3756800 1 1 1 1 1 1 1 1 1 1 1 2982100 4147700 24593 3972800 3490500 6237000 3307900 3867700 3563400 3813700 3905400 2776800 3869600 277280 4099100 3343800 6160900 3372800 4050400 3626100 3726900 3756800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 361470000 361470000 0 20073 1703 18448 103095;103096 124925;124926 124926 2 VEADRPGK Acetyl (Protein N-term) 912.46649 0.46649483 969 P38159;P38159-2;Q96E39;P38159-3;O75526 RBMX;RBMXL1;RBMXL2 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1;RNA-binding motif protein, X-linked-like-2 yes no 1 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 29.739 29.632 2 0.00098061 7385 20211116_3429_TMUAki_TMT10x_P_F2 91.041 86.685 1537200 2752400 10728 2278300 1965500 2298100 1900100 1131600 1337700 1276400 1949100 1431400 2566500 140760 2358000 1883400 2313700 1913400 1213800 1407200 1240600 1861300 4 4 2 4 4 4 4 4 4 4 4 987090 1729900 7830.1 1433300 1252400 1735600 1160300 717180 844470 803380 1254100 919120 1613100 91565 1487700 1198900 1726600 1172000 783160 887460 781070 1197100 2 2 1 2 2 2 2 2 2 2 2 550160 1022400 2897.6 844990 713090 562480 739810 414460 493270 472990 695030 512270 953350 49197 870330 684500 587120 741390 430620 519760 459540 664230 2 2 1 2 2 2 2 2 2 2 2 96218000 60342000 35876000 20074 969 18449 103097;103098;103099;103100 124927;124928;124929;124930 124928 4 VEADRPGK Unmodified 870.45593 0.45593014 969 P38159;P38159-2;Q96E39;P38159-3;O75526 RBMX;RBMXL1;RBMXL2 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1;RNA-binding motif protein, X-linked-like-2 yes no 0 0 0 1 By MS/MS 3 0 1 1 28.135 27.852 3 0.057417 8228 20211116_3441_TMUAki_TMT10x_S_F3 53.968 39.973 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20075 969 18449 103101 124931 124931 1 VEAKPEVQSQPPR Unmodified 1463.7732 0.77324153 3188 Q9UN86;Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 yes no 0 0 0 1 By MS/MS 4 0 1 1 32.364 32.394 3 4.594E-09 7326 20211116_3431_TMUAki_TMT10x_P_F4 125.28 113.59 2399000 3606000 12097 3646000 3983500 4307700 2625800 2073600 2576700 2134100 2914600 2233700 3364900 217880 3726600 3785200 4297400 2732900 2222800 2635500 2081700 2801100 3 3 2 3 3 3 3 3 3 3 3 2399000 3606000 12097 3646000 3983500 4307700 2625800 2073600 2576700 2134100 2914600 2233700 3364900 217880 3726600 3785200 4297400 2732900 2222800 2635500 2081700 2801100 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50459000 50459000 0 20076 3188 18450 103102 124932;124933;124934 124932 3 VEALTKEELEFEVPFR Unmodified 1934.9989 0.99894395 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 0 1 By MS/MS By MS/MS 3.8 0.748 2 2 1 4 1 76.091 76.06 3 5.1435E-30 26711 20211116_3430_TMUAki_TMT10x_P_F3 170.5 152.39 15502000 25948000 372630 24711000 14327000 24981000 19434000 14965000 16857000 17131000 18770000 14437000 24208000 1616100 25301000 13888000 25207000 19366000 15786000 17330000 16642000 18047000 3 3 3 3 3 3 3 3 3 3 3 11092000 18432000 334790 17024000 9574900 19064000 13072000 10950000 12331000 12356000 13204000 10330000 17194000 1210400 17497000 9289000 19113000 13054000 11585000 12608000 12010000 12710000 2 2 2 2 2 2 2 2 2 2 2 4410100 7515800 37840 7687700 4751700 5916100 6361900 4015200 4526100 4775100 5566100 4106500 7013700 405680 7804100 4598900 6093500 6312100 4201000 4721800 4632300 5337200 1 1 1 1 1 1 1 1 1 1 1 1252400000 948270000 304130000 20077 3317 18451 103103;103104;103105;103106;103107 124935;124936;124937;124938 124935 4 VEAMALKPDLVNVIK Unmodified 1638.9379 0.93786402 587 P09884 POLA1 DNA polymerase alpha catalytic subunit yes yes 0 0 0 1 By MS/MS 8 0 1 1 71.88 71.708 3 2.545E-14 22476 20211116_3447_TMUAki_TMT10x_S_F8 130.06 104.5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20078 587 18452 103108 124939 124939 1 VEAQVYILSKEEGGR Unmodified 1676.8733 0.87334951 1097 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 0 1 By matching By MS/MS 5 0 2 1 1 54.174 54.361 3 2.9616E-05 15353 20211116_3444_TMUAki_TMT10x_S_F5 97.579 67.029 3499300 6327600 25971 6275400 4828300 3765100 3454400 4319200 4684600 4254600 5076400 3258400 5904100 332930 6368100 4596600 4003000 3613800 4361500 4725900 4158000 4884900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3499300 6327600 25971 6275400 4828300 3765100 3454400 4319200 4684600 4254600 5076400 3258400 5904100 332930 6368100 4596600 4003000 3613800 4361500 4725900 4158000 4884900 1 1 1 1 1 1 1 1 1 1 1 913430000 389500000 523940000 20079 1097 18453 103109;103110 124940 124940 1 VEATALR Unmodified 758.42865 0.42865276 3389 yes no 0 0 0 0 By MS/MS 2 0 1 1 31.436 31.209 2 0.015053 8025 20211116_3429_TMUAki_TMT10x_P_F2 93.262 0 + 829670 1376100 20705 1356200 1432300 1679800 1047300 736700 794220 721500 1145900 772660 1283900 96521 1389700 1364900 1670100 1074600 796170 831540 705280 1094500 1 1 1 1 1 1 1 1 1 1 1 829670 1376100 20705 1356200 1432300 1679800 1047300 736700 794220 721500 1145900 772660 1283900 96521 1389700 1364900 1670100 1074600 796170 831540 705280 1094500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32887000 32887000 0 20080 3389 18454 103111 124941 124941 1 VECGPKYPEAPPSVR Unmodified 1684.8243 0.82429083 1833 Q15819 UBE2V2 Ubiquitin-conjugating enzyme E2 variant 2 yes yes 0 0 0 1 By MS/MS By MS/MS 5.33 0.745 1 2 3 5 1 38.138 38.172 3 1.0257E-06 8449 20211116_3434_TMUAki_TMT10x_P_F6 112.57 81.616 1672400 2607600 1246 3519100 5342800 4609600 2508800 3403600 3600800 2463300 3115700 1557100 2436500 177220 3541900 5050800 4601600 2726800 3493300 3598200 2444500 3020600 5 5 1 5 5 5 5 5 5 5 5 1218400 1904200 1246 2464200 4931800 4275100 2221800 2507800 2618600 1727400 2241300 1134400 1778900 140280 2501400 4659900 4203800 2407700 2615500 2633200 1719200 2173800 4 4 1 4 4 4 4 4 4 4 4 453990 703420 0 1054800 411010 334490 286940 895870 982270 735860 874450 422710 657680 36940 1040500 390970 397800 319070 877740 965040 725270 846890 1 1 0 1 1 1 1 1 1 1 1 309770000 248290000 61479000 20081 1833 18455 103112;103113;103114;103115;103116;103117 124942;124943;124944;124945;124946;124947 124944 6 VECTYISIDQVPR Unmodified 1578.7712 0.77119262 1561 Q12765;Q12765-2 SCRN1 Secernin-1 yes no 0 0 0 0 By MS/MS By MS/MS 4.25 0.661 1 4 3 4 4 57.714 57.808 2;3 9.9665E-36 17596 20211116_3431_TMUAki_TMT10x_P_F4 261.52 233.31 14163000 23868000 154980 25388000 16288000 18986000 14288000 17640000 17657000 17810000 19325000 13188000 22277000 1323500 25697000 15575000 19706000 14702000 18008000 17875000 17388000 18591000 6 6 4 6 6 6 6 6 6 6 6 4680300 7442300 8471.6 7854700 7477700 10290000 6228000 5260000 5359000 5690500 5974200 4357800 6946000 429260 8020300 7138700 10219000 6355800 5614700 5511800 5539900 5744100 2 2 1 2 2 2 2 2 2 2 2 9482300 16425000 146510 17534000 8810100 8696100 8060100 12380000 12298000 12120000 13351000 8829900 15331000 894230 17677000 8436300 9487000 8346100 12393000 12363000 11848000 12847000 4 4 3 4 4 4 4 4 4 4 4 1465000000 602920000 862100000 20082 1561 18456 103118;103119;103120;103121;103122;103123;103124;103125 124948;124949;124950;124951;124952;124953;124954;124955;124956 124950 9 VEDLTFTSPFCLQVK Unmodified 1782.8862 0.88622238 2612 Q99873;Q99873-2;Q99873-3;Q99873-5 PRMT1 Protein arginine N-methyltransferase 1 yes no 0 0 0 0 By MS/MS By MS/MS 7 0.775 3 4 3 6 4 79.204 79.225 2;3 8.4486E-20 27857 20211116_3446_TMUAki_TMT10x_S_F7 177.57 142.68 20300000 35043000 181000 33857000 20948000 27402000 25907000 14639000 13268000 17385000 22744000 18902000 32695000 1744300 34527000 20214000 28026000 25628000 15610000 14387000 16866000 21647000 4 4 2 4 4 4 4 4 4 4 4 9858700 15821000 0 15360000 9915900 15956000 10805000 6958800 6852800 8412100 10384000 9178500 14761000 701710 15711000 9522600 16016000 10791000 7572800 7269800 8155800 9908200 2 2 0 2 2 2 2 2 2 2 2 10442000 19223000 181000 18497000 11032000 11446000 15102000 7679900 6414700 8973400 12360000 9723500 17934000 1042600 18816000 10691000 12011000 14837000 8037200 7117000 8710600 11739000 2 2 2 2 2 2 2 2 2 2 2 6874700000 2998700000 3875900000 20083 2612 18457 103126;103127;103128;103129;103130;103131;103132;103133;103134;103135 124957;124958;124959;124960;124961;124962;124963 124963 7 VEDVSAVEIVGGATR Unmodified 1500.7784 0.77838649 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 0 By MS/MS By MS/MS 3.25 0.661 1 4 3 4 4 58.446 58.195 2;3 6.926E-35 20459 20211116_3441_TMUAki_TMT10x_S_F3 237.87 189.31 32494000 53741000 345550 57779000 38100000 46369000 35104000 34914000 31992000 35255000 41072000 30256000 50161000 2913600 58489000 36466000 47684000 35668000 36087000 33004000 34418000 39340000 10 10 6 10 10 10 10 10 10 10 10 14799000 23439000 54022 25430000 19336000 28548000 17151000 13719000 13236000 14930000 17660000 13779000 21878000 1222800 25849000 18481000 28557000 17390000 14733000 13794000 14531000 16899000 4 4 2 4 4 4 4 4 4 4 4 17695000 30302000 291530 32349000 18763000 17821000 17952000 21195000 18756000 20325000 23412000 16477000 28283000 1690800 32640000 17984000 19127000 18277000 21354000 19211000 19886000 22440000 6 6 4 6 6 6 6 6 6 6 6 2514000000 1169100000 1344900000 20084 2345 18458 103136;103137;103138;103139;103140;103141;103142;103143 124964;124965;124966;124967;124968;124969;124970;124971;124972;124973;124974 124969 11 VEEAEPEEFVVEK Unmodified 1532.7246 0.72461959 1607 Q13185 CBX3 Chromobox protein homolog 3 yes yes 0 0 0 0 By matching By MS/MS 1 0 2 1 1 59.383 59.236 3 0.021528 19870 20211116_3439_TMUAki_TMT10x_S_F1 47.666 26.109 2298000 4405600 67830 3994000 2514500 2561800 2543900 3812200 3795900 3317100 3426000 2140200 4109300 256770 4082200 2415800 2726200 2617600 3798000 3793800 3260100 3316300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2298000 4405600 67830 3994000 2514500 2561800 2543900 3812200 3795900 3317100 3426000 2140200 4109300 256770 4082200 2415800 2726200 2617600 3798000 3793800 3260100 3316300 1 1 1 1 1 1 1 1 1 1 1 499380000 393850000 105530000 20085 1607 18459 103144;103145 124975 124975 1 VEEAIVAR Unmodified 885.49198 0.4919813 1763 Q15050 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 37.363 37.23 2 0.0027005 8838 20211116_3440_TMUAki_TMT10x_S_F2 106.36 52.802 2027900 3256700 8940.7 3309200 2902500 3005600 2363700 2329400 2300100 2151000 2771100 1888300 3039000 188590 3367600 2770100 3065400 2423900 2397200 2359500 2108100 2658600 3 3 2 3 3 3 3 3 3 3 3 1071300 1811600 3012.7 1750000 1974700 2149100 1347900 1295200 1294300 1188200 1458200 997550 1690200 104280 1795600 1877900 2145500 1398300 1356700 1324900 1164800 1401600 1 1 1 1 1 1 1 1 1 1 1 956600 1445000 5928 1559200 927850 856540 1015900 1034200 1005800 962790 1312900 890730 1348800 84306 1572000 892230 919920 1025500 1040400 1034600 943260 1257000 2 2 1 2 2 2 2 2 2 2 2 61471000 36205000 25265000 20086 1763 18460 103146;103147;103148 124976;124977;124978 124977 3 VEEIAASK Unmodified 845.44945 0.44944778 1495 Q02543 RPL18A 60S ribosomal protein L18a yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 39.391 39.445 2 0.0078072 11611 20211116_3430_TMUAki_TMT10x_P_F3 88.37 45.455 297530 452200 3459.3 495300 617440 527870 331730 249890 283130 235340 360820 277050 422110 32371 502730 585060 529500 349920 267660 292920 230450 345660 1 1 1 1 1 1 1 1 1 1 1 297530 452200 3459.3 495300 617440 527870 331730 249890 283130 235340 360820 277050 422110 32371 502730 585060 529500 349920 267660 292920 230450 345660 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11040000 11040000 0 20087 1495 18461 103149;103150 124979;124980 124979 2 VEEISPNIR Unmodified 1055.5611 0.56112349 3116 Q9UHB9;Q9UHB9-4;Q9UHB9-2 SRP68 Signal recognition particle subunit SRP68 yes no 0 0 0 0 By MS/MS 3 0 1 1 40.142 40.196 2 0.001358 11950 20211116_3430_TMUAki_TMT10x_P_F3 99.136 53.163 235500 386630 6137.7 458840 692670 494480 314670 240390 254830 203150 353000 219320 361030 31648 463520 655030 495840 337100 256120 265340 199940 337490 1 1 1 1 1 1 1 1 1 1 1 235500 386630 6137.7 458840 692670 494480 314670 240390 254830 203150 353000 219320 361030 31648 463520 655030 495840 337100 256120 265340 199940 337490 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19717000 19717000 0 20088 3116 18462 103151 124981 124981 1 VEEQEPELTSTPNFVVEVIK Unmodified 2286.1631 0.16310875 1535 Q07021 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes yes 0 0 0 0 By MS/MS By matching 1 0 2 1 1 78.11 78.084 3 4.5883E-09 25519 20211116_3428_TMUAki_TMT10x_P_F1 108.18 100.19 3514300 5185900 109870 5624200 2535300 5474100 3473800 3230000 3225800 3281900 4080500 3273000 4840600 380050 5704400 2461200 5535500 3466900 3398900 3322900 3203100 3909800 1 1 1 1 1 1 1 1 1 1 1 3514300 5185900 109870 5624200 2535300 5474100 3473800 3230000 3225800 3281900 4080500 3273000 4840600 380050 5704400 2461200 5535500 3466900 3398900 3322900 3203100 3909800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1516200000 869710000 646500000 20089 1535 18463 103152;103153 124982 124982 1 VEEQEPELTSTPNFVVEVIKNDDGK Unmodified 2815.3763 0.376349 1535 Q07021 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes yes 0 0 0 1 By MS/MS 1 0 1 1 77.63 77.63 4 8.7965E-08 25327 20211116_3428_TMUAki_TMT10x_P_F1 92.242 79.809 1895100 3364600 62685 2938100 1841300 3594100 2023500 1953900 1972900 2111200 2387500 1765000 3137900 214780 3037300 1773900 3584100 2041500 2074100 2024000 2055500 2290300 1 1 1 1 1 1 1 1 1 1 1 1895100 3364600 62685 2938100 1841300 3594100 2023500 1953900 1972900 2111200 2387500 1765000 3137900 214780 3037300 1773900 3584100 2041500 2074100 2024000 2055500 2290300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 467240000 467240000 0 20090 1535 18464 103154 124983 124983 1 VEEQEPELTSTPNFVVEVIKNDDGKK Unmodified 2943.4713 0.47131202 1535 Q07021 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes yes 0 0 0 2 By MS/MS By MS/MS 3.78 1.47 1 1 1 3 2 1 3 6 73.842 73.782 4;5 2.2589E-49 26852 20211116_3441_TMUAki_TMT10x_S_F3 212.94 207.03 52262000 92454000 735350 78185000 57853000 73368000 65397000 55076000 54987000 57946000 64650000 48666000 86216000 5019200 80697000 55702000 74628000 65618000 57006000 56738000 56474000 62066000 14 14 12 14 14 14 14 14 14 14 14 13292000 22255000 204220 18418000 12923000 24594000 16620000 13144000 14125000 13596000 15360000 12378000 20752000 1287200 19153000 12496000 24417000 16588000 13955000 14523000 13260000 14779000 3 3 3 3 3 3 3 3 3 3 3 38970000 70198000 531130 59766000 44931000 48773000 48777000 41932000 40861000 44349000 49289000 36288000 65464000 3732100 61544000 43205000 50211000 49031000 43051000 42215000 43214000 47287000 11 11 9 11 11 11 11 11 11 11 11 10364000000 3603700000 6760800000 20091 1535 18465 103155;103156;103157;103158;103159;103160;103161;103162;103163 124984;124985;124986;124987;124988;124989;124990;124991;124992;124993;124994;124995;124996;124997 124989 14 VEESTQVGGDPFPAVFGDFLGR Unmodified 2323.1121 0.11207623 1703 Q14315;Q14315-2 FLNC Filamin-C yes no 0 0 0 0 By MS/MS 3 0 1 1 80.863 80.801 3 1.9374E-05 28558 20211116_3430_TMUAki_TMT10x_P_F3 76.049 64.769 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20092 1703 18466 103164 124998 124998 1 VEEVGPYTYR Unmodified 1211.5823 0.58225287 1676 Q14108;Q14108-2 SCARB2 Lysosome membrane protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 43.269 43.247 2 2.1581E-08 13130 20211116_3430_TMUAki_TMT10x_P_F3 169.09 145.13 2765100 4617900 10012 6129000 5422400 4527100 3247400 4388900 5486000 3661800 4401200 2574000 4314700 198260 6121900 5140100 4707600 3477000 4447500 5444600 3606200 4279300 4 4 1 4 4 4 4 4 4 4 4 1315700 2084700 0 2722900 4144500 3234600 1929000 1829100 2348100 1483300 1822700 1224600 1947600 85816 2740400 3914100 3232100 2085400 1920300 2351800 1462900 1774600 2 2 0 2 2 2 2 2 2 2 2 1449400 2533200 10012 3406100 1277900 1292400 1318400 2559800 3137800 2178500 2578500 1349500 2367000 112450 3381500 1226000 1475500 1391500 2527200 3092800 2143300 2504700 2 2 1 2 2 2 2 2 2 2 2 161290000 56463000 104830000 20093 1676 18467 103165;103166;103167 124999;125000;125001;125002 124999 4 VEFATLQEALAHALTEK Unmodified 1869.9836 0.98362824 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 79.705 79.71 3 0.010037 26312 20211116_3436_TMUAki_TMT10x_P_F8 49.141 38.096 16501000 24891000 0 25007000 14173000 29022000 17842000 14572000 13078000 15199000 19722000 15361000 23227000 969420 25563000 13658000 28993000 17759000 15564000 13749000 14818000 18819000 1 1 0 1 1 1 1 1 1 1 1 16501000 24891000 0 25007000 14173000 29022000 17842000 14572000 13078000 15199000 19722000 15361000 23227000 969420 25563000 13658000 28993000 17759000 15564000 13749000 14818000 18819000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 870810000 870810000 0 20094 1741 18468 103168;103169 125003;125004 125003 2 VEFMDDTSR Oxidation (M) 1114.4601 0.46008882 1374 P62857 RPS28 40S ribosomal protein S28 yes yes 0 0 1 0 By MS/MS By MS/MS 2 0.756 2 3 2 3 4 35.914 35.858 2 3.4251E-05 8041 20211116_3440_TMUAki_TMT10x_S_F2 155.95 141.44 2529300 3836300 14481 4467900 5082100 3699800 2892200 2202900 2475100 2086600 3281000 2355000 3582000 250970 4501900 4818200 3782900 3035300 2311800 2564800 2042700 3140200 6 6 4 6 6 6 6 6 6 6 6 1502100 2193200 3302.9 2515200 4161300 2879100 1860600 1326800 1543500 1233700 1917300 1398600 2047700 164860 2548600 3932400 2875700 1997700 1424500 1597300 1208800 1838000 2 2 2 2 2 2 2 2 2 2 2 1027200 1643100 11178 1952700 920760 820780 1031700 876110 931660 852850 1363800 956410 1534400 86117 1953300 885820 907220 1037600 887280 967510 833900 1302200 4 4 2 4 4 4 4 4 4 4 4 521410000 395240000 126170000 20095 1374 18469 103170;103171;103172;103173;103174;103175;103176 125005;125006;125007;125008;125009;125010 125010 1847 6 VEFMDDTSR Unmodified 1098.4652 0.4651742 1374 P62857 RPS28 40S ribosomal protein S28 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 45.4 45.216 2 3.3639E-05 13712 20211116_3429_TMUAki_TMT10x_P_F2 123.21 100.72 4183000 6623200 30433 8688000 3348100 2757600 3288000 4026700 4187800 3991900 6045500 3894600 6187900 318130 8628700 3207700 3203600 3366100 4028900 4286900 3900200 5774400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4183000 6623200 30433 8688000 3348100 2757600 3288000 4026700 4187800 3991900 6045500 3894600 6187900 318130 8628700 3207700 3203600 3366100 4028900 4286900 3900200 5774400 2 2 1 2 2 2 2 2 2 2 2 119210000 0 119210000 20096 1374 18469 103177;103178;103179;103180 125011;125012;125013 125011 3 VEGDLKGPEVDLK Unmodified 1397.7402 0.74021007 1555 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 1 By MS/MS 4 0 1 1 50.357 50.52 3 0.08469 14595 20211116_3431_TMUAki_TMT10x_P_F4 40.857 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20097 1555 18470 103181 125014 125014 1 VEGFPTIYFAPSGDK Unmodified 1626.793 0.79297392 654 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 76.64 76.722 2;3 2.1148E-14 26887 20211116_3446_TMUAki_TMT10x_S_F7 156.14 129.02 12178000 18891000 49702 20353000 11321000 10343000 14178000 6230500 6765600 7819700 11919000 11340000 17632000 1025200 20510000 10929000 11061000 14003000 6589900 7390100 7571600 11339000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12178000 18891000 49702 20353000 11321000 10343000 14178000 6230500 6765600 7819700 11919000 11340000 17632000 1025200 20510000 10929000 11061000 14003000 6589900 7390100 7571600 11339000 2 2 1 2 2 2 2 2 2 2 2 711830000 0 711830000 20098 654 18471 103182;103183 125015;125016;125017 125016 3 VEGHVFPEFK Unmodified 1187.5975 0.597509 146 O14964;O14964-2 HGS Hepatocyte growth factor-regulated tyrosine kinase substrate yes no 0 0 0 0 By MS/MS 5 0 1 1 50.598 50.792 3 0.007991 14963 20211116_3433_TMUAki_TMT10x_P_F5 65.5 48.869 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20099 146 18472 103184 125018 125018 1 VEGIVHPTTAEIDLKEDIGK Unmodified 2163.1423 0.14231373 3051 Q9P0M6 H2AFY2 Core histone macro-H2A.2 yes yes 0 0 0 1 By matching By MS/MS 4.33 1.25 1 1 1 1 2 61.5 61.364 4 1.1892E-09 19542 20211116_3442_TMUAki_TMT10x_S_F4 119.54 100.78 8724900 16232000 103570 15229000 9689100 10863000 8946400 11652000 11961000 12574000 12799000 8124300 15142000 800430 15542000 9275900 11353000 9206900 11835000 12066000 12242000 12321000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8724900 16232000 103570 15229000 9689100 10863000 8946400 11652000 11961000 12574000 12799000 8124300 15142000 800430 15542000 9275900 11353000 9206900 11835000 12066000 12242000 12321000 3 3 2 3 3 3 3 3 3 3 3 1259800000 352380000 907380000 20100 3051 18473 103185;103186;103187 125019;125020;125021 125020 3 VEGTEPTTAFNLFVGNLNFNK Unmodified 2311.1485 0.14846174 729 P19338 NCL Nucleolin yes yes 0 0 0 0 By MS/MS By MS/MS 3.59 2.79 9 8 2 2 3 5 12 17 73.858 73.842 2;3;4 1.1093E-101 27817 20211116_3429_TMUAki_TMT10x_P_F2 319.7 304.31 224300000 359770000 1379800 373950000 225510000 328230000 253620000 187470000 184830000 212540000 248550000 208840000 335760000 14313000 379810000 216900000 334040000 253660000 198460000 193300000 206550000 237800000 42 42 21 42 42 42 42 42 42 42 42 145370000 228540000 674590 239020000 136240000 246850000 143530000 122190000 123030000 140440000 155030000 135340000 213300000 9326400 243220000 130770000 248190000 144570000 131070000 127190000 136400000 148560000 15 15 6 15 15 15 15 15 15 15 15 78939000 131230000 705260 134930000 89271000 81386000 110100000 65277000 61798000 72107000 93528000 73501000 122460000 4987000 136590000 86125000 85851000 109090000 67387000 66108000 70142000 89241000 27 27 15 27 27 27 27 27 27 27 27 61174000000 34697000000 26477000000 20101 729 18474 103188;103189;103190;103191;103192;103193;103194;103195;103196;103197;103198;103199;103200;103201;103202;103203;103204;103205;103206;103207;103208;103209;103210;103211;103212;103213;103214;103215;103216 125022;125023;125024;125025;125026;125027;125028;125029;125030;125031;125032;125033;125034;125035;125036;125037;125038;125039;125040;125041;125042;125043;125044;125045;125046;125047;125048;125049;125050;125051;125052;125053;125054;125055;125056;125057;125058;125059;125060;125061;125062;125063;125064;125065;125066;125067;125068 125030 47 VEHTPDGVK Unmodified 980.49271 0.49270958 620 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 By MS/MS 3 0 1 1 30.159 29.896 3 0.07425 9017 20211116_3441_TMUAki_TMT10x_S_F3 44.309 23.338 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20102 620 18475 103217 125069 125069 1 VEIAGPGFINVHLR Unmodified 1520.8463 0.8463469 1218 P54136;P54136-2 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 61.148 61.212 3 1.0608E-29 18123 20211116_3447_TMUAki_TMT10x_S_F8 205.8 175.24 13923000 22893000 138640 20379000 17486000 28042000 17626000 17169000 14688000 16673000 16637000 12964000 21352000 1152000 21082000 16767000 27850000 17781000 17990000 15140000 16304000 15989000 5 5 4 5 5 5 5 5 5 5 5 10037000 16358000 138640 15018000 13430000 24194000 13012000 13640000 11431000 12143000 12358000 9346900 15258000 1008900 15553000 12875000 23844000 13171000 14356000 11731000 11922000 11892000 4 4 4 4 4 4 4 4 4 4 4 3885900 6535200 0 5361100 4056300 3847800 4614500 3529100 3256600 4529300 4279700 3616700 6093700 143120 5529500 3891600 4006100 4609500 3634100 3408800 4382300 4096800 1 1 0 1 1 1 1 1 1 1 1 2731700000 1464900000 1266800000 20103 1218 18476 103218;103219;103220;103221 125070;125071;125072;125073;125074;125075 125075 6 VEIAGPGFINVHLRK Unmodified 1648.9413 0.94130991 1218 P54136;P54136-2 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 55.406 55.205 4 3.4597E-07 18166 20211116_3430_TMUAki_TMT10x_P_F3 117.7 100.34 7795200 13058000 162000 12847000 11276000 10035000 8851200 8937500 8410600 8105400 11023000 7259300 12184000 842130 13079000 10760000 10372000 9091300 9117500 8668300 7950400 10552000 2 2 1 2 2 2 2 2 2 2 2 3351500 4848500 0 5708400 5779000 5632100 3690000 3004500 3052000 2979800 4058000 3120500 4527400 307980 5761700 5488400 5683300 3832400 3186600 3168500 2911200 3883400 1 1 0 1 1 1 1 1 1 1 1 4443800 8210000 162000 7138800 5496800 4402900 5161200 5933100 5358600 5125600 6964500 4138800 7656800 534150 7317500 5272000 4688500 5258900 5930900 5499800 5039200 6668700 1 1 1 1 1 1 1 1 1 1 1 1668700000 1380500000 288250000 20104 1218 18477 103222;103223 125076;125077 125076 2 VEILANDQGNR Unmodified 1227.6208 0.62076364 701 P17066;P48741 HSPA6;HSPA7 Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 yes no 0 0 0 0 By MS/MS By MS/MS 3.89 2.09 4 4 6 4 3 3 2 2 14 14 38.204 38.267 2;3 6.6466E-24 10128 20211116_3430_TMUAki_TMT10x_P_F3 254.57 0 59841000 95730000 639810 101360000 83778000 81738000 63425000 58536000 63498000 54652000 72443000 55716000 89347000 5089100 102720000 79810000 83959000 65401000 60570000 64912000 53536000 69606000 35 35 15 35 35 35 35 35 35 35 35 34571000 54708000 381110 57938000 57544000 60058000 38862000 34133000 36924000 31199000 41187000 32188000 51061000 3024000 58910000 54697000 60470000 40336000 35925000 37800000 30591000 39600000 19 19 8 19 19 19 19 19 19 19 19 25269000 41022000 258700 43425000 26235000 21680000 24563000 24403000 26573000 23453000 31256000 23528000 38286000 2065000 43806000 25113000 23489000 25065000 24645000 27112000 22945000 30006000 16 16 7 16 16 16 16 16 16 16 16 15266000000 7049400000 8216100000 20105 701 18478 103224;103225;103226;103227;103228;103229;103230;103231;103232;103233;103234;103235;103236;103237;103238;103239;103240;103241;103242;103243;103244;103245;103246;103247;103248;103249;103250;103251 125078;125079;125080;125081;125082;125083;125084;125085;125086;125087;125088;125089;125090;125091;125092;125093;125094;125095;125096;125097;125098;125099;125100;125101;125102;125103;125104;125105;125106;125107;125108;125109;125110 125083 33 VEITPESILSALSK Unmodified 1485.829 0.82902508 1948 Q5VT52;Q5VT52-2;Q5VT52-3;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 6.7 2 1 1 4 4 4 6 80.799 80.81 2;3 2.3323E-23 26142 20211116_3447_TMUAki_TMT10x_S_F8 190.66 157.57 14541000 24094000 241420 23196000 13995000 20492000 18874000 11543000 13977000 15320000 17885000 13540000 22479000 1399000 23687000 13555000 20842000 18738000 12301000 14572000 14807000 17132000 6 6 5 6 6 6 6 6 6 6 6 4769100 7810900 65117 7855500 4405100 8392700 5553400 3617900 4546200 5072900 5727700 4440800 7288600 427160 8018800 4255100 8409500 5541900 3962900 4711000 4894500 5488700 2 2 1 2 2 2 2 2 2 2 2 9771500 16283000 176300 15340000 9589900 12100000 13320000 7925000 9430800 10248000 12157000 9099600 15191000 971890 15668000 9299700 12432000 13196000 8337800 9861100 9912600 11643000 4 4 4 4 4 4 4 4 4 4 4 3368700000 1441900000 1926800000 20106 1948 18479 103252;103253;103254;103255;103256;103257;103258;103259;103260;103261 125111;125112;125113;125114;125115;125116;125117;125118 125118 8 VEITYTPSDGTQK Unmodified 1437.6987 0.69873919 364 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 0 0 0 0 By MS/MS 4 0 1 1 47.417 47.591 3 6.2977E-06 13843 20211116_3442_TMUAki_TMT10x_S_F4 101.89 85.751 2872200 5299600 0 5029200 3380600 3217100 2773400 5645900 5666200 4615200 5151500 2674300 4944000 240990 5122600 3225900 3443700 2934500 5587000 5619600 4549900 4985400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2872200 5299600 0 5029200 3380600 3217100 2773400 5645900 5666200 4615200 5151500 2674300 4944000 240990 5122600 3225900 3443700 2934500 5587000 5619600 4549900 4985400 1 1 0 1 1 1 1 1 1 1 1 102150000 0 102150000 20107 364 18480 103262 125119 125119 1 VEKEEAGGGISEEEAAQYDR Unmodified 2165.9713 0.97128523 3076 Q9UBE0;Q9UBE0-3;Q9UBE0-2 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed yes no 0 0 0 1 By MS/MS By MS/MS 1.67 0.745 3 2 1 3 3 40.534 40.402 3 1.9359E-64 12174 20211116_3439_TMUAki_TMT10x_S_F1 269.85 260.69 2117700 3427500 17021 5110300 9544900 7132200 3737300 5739800 8667700 3201600 5508400 1971800 3204500 280090 5124700 9006100 7109800 4247200 5830100 8490000 3231400 5411600 5 5 3 5 5 5 5 5 5 5 5 1130600 1809900 10818 2699900 8708300 6411400 3008500 3186400 4819200 1716200 2914700 1052600 1692200 195910 2746900 8206400 6230100 3405800 3358400 4755900 1736700 2870600 2 2 1 2 2 2 2 2 2 2 2 987160 1617500 6203 2410400 836630 720750 728740 2553400 3848500 1485400 2593700 919180 1512300 84186 2377800 799780 879660 841410 2471700 3734100 1494700 2540900 3 3 2 3 3 3 3 3 3 3 3 350940000 227980000 122950000 20108 3076 18481 103263;103264;103265;103266;103267;103268 125120;125121;125122;125123;125124;125125 125123 6 VEKIPGGIIEDSCVLR Unmodified 1783.9502 0.95021962 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 1 By MS/MS By MS/MS 6.2 1.17 1 2 2 4 1 4 6 62.022 62.232 3 1.1637E-10 30721 20211116_3446_TMUAki_TMT10x_S_F7 131.25 112.17 72119000 145490000 1254400 97817000 127150000 211010000 118550000 208610000 177650000 176380000 143880000 67157000 135580000 7725900 104850000 121760000 207920000 122530000 211250000 176940000 173590000 139840000 22 22 18 22 22 22 22 22 22 22 22 39175000 76310000 755080 49244000 72976000 149860000 79898000 111050000 95767000 93773000 74918000 36481000 71104000 4372000 53653000 70189000 145590000 81173000 114350000 95992000 92295000 72916000 7 7 6 7 7 7 7 7 7 7 7 32943000 69184000 499340 48574000 54173000 61143000 38653000 97552000 81880000 82604000 68959000 30676000 64479000 3353900 51197000 51574000 62332000 41357000 96900000 80949000 81291000 66923000 15 15 12 15 15 15 15 15 15 15 15 8407300000 4460100000 3947200000 20109 1094 18482 103269;103270;103271;103272;103273;103274;103275;103276;103277;103278 125126;125127;125128;125129;125130;125131;125132;125133;125134;125135;125136;125137;125138;125139;125140;125141;125142;125143;125144;125145;125146;125147;125148 125144 23 VELAQLQEEWNEHNAK Unmodified 1936.9279 0.92790427 2796 Q9H307 PNN Pinin yes yes 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 62.486 62.402 3 0.00052486 21209 20211116_3430_TMUAki_TMT10x_P_F3 67.646 55.5 3592300 5620700 0 5317400 4748300 8039000 5308400 5336300 4834600 4998100 5263400 3344600 5243600 291780 5486800 4565500 7961000 5340600 5551900 4954300 4895300 5064100 1 1 0 1 1 1 1 1 1 1 1 3592300 5620700 0 5317400 4748300 8039000 5308400 5336300 4834600 4998100 5263400 3344600 5243600 291780 5486800 4565500 7961000 5340600 5551900 4954300 4895300 5064100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1366600000 1366600000 0 20110 2796 18483 103279;103280 125149 125149 1 VELDNMPLR Oxidation (M) 1101.5488 0.54884425 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 1 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 41.496 41.479 2 0.014793 12344 20211116_3430_TMUAki_TMT10x_P_F3 69.598 41.424 4161200 7045700 30072 8602300 5136000 4765000 4063000 6029300 6734800 4907200 6925100 3874600 6580200 364900 8608500 4898000 5119300 4260100 6032700 6741300 4838800 6674500 4 4 3 4 4 4 4 4 4 4 4 740630 1211700 8039.6 1531700 2410500 1756700 1050700 798570 766610 643010 1196000 689660 1131900 92284 1543400 2277600 1754200 1128100 855630 807560 634410 1140400 1 1 1 1 1 1 1 1 1 1 1 3420600 5833900 22032 7070600 2725500 3008200 3012300 5230700 5968200 4264200 5729100 3184900 5448300 272620 7065100 2620400 3365100 3132000 5177100 5933700 4204400 5534100 3 3 2 3 3 3 3 3 3 3 3 620910000 277740000 343170000 20111 1779 18484 103281;103282;103283 125150;125151 125150 2396 2 VELDNMPLR Unmodified 1085.5539 0.55392962 1779 Q15233;Q15233-2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 53.089 53.11 2 6.4197E-06 15678 20211116_3431_TMUAki_TMT10x_P_F4 176.6 107.41 12651000 18943000 0 24316000 22236000 18638000 15088000 10074000 8981700 10097000 15242000 11778000 17696000 1026200 24341000 21131000 19145000 15489000 10675000 9626700 9860000 14510000 3 3 0 3 3 3 3 3 3 3 3 8533900 12400000 0 16238000 18786000 15739000 12149000 6781300 6199200 6835500 10055000 7945300 11585000 775660 16287000 17841000 15863000 12486000 7348400 6703800 6673700 9580600 2 2 0 2 2 2 2 2 2 2 2 4117200 6542600 0 8077200 3449600 2899200 2939100 3292700 2782400 3261100 5187200 3832800 6110700 250510 8054200 3289500 3281700 3003100 3327000 2922800 3186300 4929500 1 1 0 1 1 1 1 1 1 1 1 741590000 544170000 197430000 20112 1779 18484 103284;103285;103286;103287 125152;125153;125154;125155 125153 4 VELNALMTDETISNVPILILGNK Oxidation (M) 2512.3458 0.34584092 2919 Q9NR31;Q9NR31-2 SAR1A GTP-binding protein SAR1a yes no 0 0 1 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 80.642 80.659 3 1.6054E-15 28551 20211116_3446_TMUAki_TMT10x_S_F7 129.77 121.82 5805600 9848800 72391 8509700 5742200 8885200 7301100 4629400 5419500 5823400 6843800 5406000 9184900 532180 8781500 5548400 8932900 7266100 4957400 5646200 5638300 6557800 4 4 3 4 4 4 4 4 4 4 4 3077300 4825300 45422 4057800 2573900 5080200 3129500 2307500 2845900 3007600 3276000 2865600 4499700 290410 4209100 2484700 5050000 3136600 2507000 2922900 2908500 3146900 2 2 2 2 2 2 2 2 2 2 2 2728300 5023400 26969 4452000 3168300 3805000 4171600 2321900 2573600 2815800 3567800 2540400 4685200 241770 4572400 3063800 3882800 4129500 2450400 2723400 2729700 3410900 2 2 1 2 2 2 2 2 2 2 2 2221600000 798720000 1422900000 20113 2919 18485 103288;103289;103290 125156;125157;125158;125159 125158 3022 4 VELNALMTDETISNVPILILGNKIDR Oxidation (M) 2896.558 0.55795896 2919 Q9NR31;Q9NR31-2 SAR1A GTP-binding protein SAR1a yes no 0 0 1 1 By matching By MS/MS 7.33 0.471 2 1 1 2 79.724 79.743 4 0.0061177 25703 20211116_3447_TMUAki_TMT10x_S_F8 46.399 33.596 1521300 2590900 0 2131700 1780000 1607600 1879700 1746500 1599200 1624200 2149600 1416200 2415800 100110 2199300 1707300 1673100 1892700 1765000 1658700 1591300 2056600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1521300 2590900 0 2131700 1780000 1607600 1879700 1746500 1599200 1624200 2149600 1416200 2415800 100110 2199300 1707300 1673100 1892700 1765000 1658700 1591300 2056600 1 1 0 1 1 1 1 1 1 1 1 1553200000 441240000 1112000000 20114 2919 18486 103291;103292;103293 125160 125160 3022 1 VELSDVQNPAISITENVLHFK Unmodified 2352.2325 0.23252572 3047 Q9P035;Q9P035-2 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 1.26 1 2 2 4 3 6 6 79.172 79.182 3;4 6.7138E-27 27500 20211116_3435_TMUAki_TMT10x_P_F7 175.56 154.02 53048000 88613000 291230 83970000 62280000 76072000 66643000 45470000 40772000 49036000 63302000 49392000 82668000 4473800 85873000 59823000 77296000 66570000 47882000 43410000 47744000 60368000 10 10 5 10 10 10 10 10 10 10 10 26780000 44478000 191790 42607000 24965000 47078000 31720000 23028000 21347000 25231000 32103000 24936000 41495000 2317200 43665000 24115000 47144000 31501000 24693000 22553000 24551000 30636000 5 5 3 5 5 5 5 5 5 5 5 26267000 44135000 99440 41363000 37315000 28993000 34923000 22441000 19425000 23805000 31199000 24456000 41173000 2156600 42208000 35708000 30152000 35069000 23188000 20858000 23193000 29732000 5 5 2 5 5 5 5 5 5 5 5 21571000000 9126300000 12444000000 20115 3047 18487 103294;103295;103296;103297;103298;103299;103300;103301;103302;103303;103304;103305 125161;125162;125163;125164;125165;125166;125167;125168;125169;125170;125171 125163 11 VELTITPDFQWDEK Unmodified 1719.8356 0.83556702 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 By MS/MS 6 0 1 1 78.224 78.206 2 0.036068 25372 20211116_3445_TMUAki_TMT10x_S_F6 56.548 20.023 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20116 352 18488 103306 125172 125172 1 VELVPPTPAEIPR Unmodified 1416.7977 0.79766537 374 O75964 ATP5L ATP synthase subunit g, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4.55 0.988 2 3 4 2 5 6 61.947 61.888 2;3 2.7276E-14 19242 20211116_3431_TMUAki_TMT10x_P_F4 164.48 117.39 42203000 70783000 448860 70466000 51706000 71254000 46566000 52338000 48478000 51299000 54137000 39296000 66047000 3851000 71921000 49464000 72115000 47562000 54137000 49435000 50144000 52049000 13 13 6 13 13 13 13 13 13 13 13 27690000 45362000 222000 45125000 33269000 56794000 32961000 33974000 31694000 33979000 34299000 25782000 42327000 2434700 46226000 31896000 56625000 33411000 35694000 32391000 33186000 33006000 9 9 4 9 9 9 9 9 9 9 9 14513000 25421000 226860 25341000 18437000 14460000 13605000 18364000 16784000 17319000 19838000 13514000 23720000 1416300 25695000 17567000 15490000 14151000 18443000 17044000 16958000 19043000 4 4 2 4 4 4 4 4 4 4 4 5548100000 3002400000 2545700000 20117 374 18489 103307;103308;103309;103310;103311;103312;103313;103314;103315;103316;103317 125173;125174;125175;125176;125177;125178;125179;125180;125181;125182;125183;125184;125185;125186;125187;125188 125175 16 VENFEAAVHFYGK Unmodified 1509.7252 0.72522871 242 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha yes yes 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 62.689 63.073 3 1.9855E-09 21161 20211116_3446_TMUAki_TMT10x_S_F7 131.35 108.82 23415000 38014000 294580 42803000 24908000 29827000 25412000 18927000 18076000 21114000 25592000 21804000 35489000 2236700 43134000 23913000 30941000 25523000 19860000 18977000 20531000 24455000 4 4 4 4 4 4 4 4 4 4 4 12325000 19742000 190150 21740000 14006000 20457000 14091000 9743900 9518700 10950000 13068000 11477000 18429000 1222600 22018000 13444000 20679000 14147000 10484000 10010000 10644000 12496000 2 2 2 2 2 2 2 2 2 2 2 11090000 18272000 104430 21063000 10901000 9369800 11321000 9183600 8557400 10164000 12524000 10327000 17060000 1014100 21116000 10469000 10262000 11376000 9376000 8967400 9886700 11959000 2 2 2 2 2 2 2 2 2 2 2 1932500000 795690000 1136800000 20118 242 18490 103318;103319;103320 125189;125190;125191;125192 125192 4 VENGEGTIPVESSDIVPTWDGIR Unmodified 2469.2023 0.2023478 1242 P55265;P55265-5;P55265-4;P55265-3;P55265-2 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 75.746 75.559 3 0.00083274 27494 20211116_3441_TMUAki_TMT10x_S_F3 60.86 52.673 1087100 2337000 1572.8 2151000 1540500 1287700 1520700 1215400 1367200 1377300 1604100 1012200 2179900 97943 2194600 1476700 1363400 1538800 1244200 1406000 1338500 1540100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1087100 2337000 1572.8 2151000 1540500 1287700 1520700 1215400 1367200 1377300 1604100 1012200 2179900 97943 2194600 1476700 1363400 1538800 1244200 1406000 1338500 1540100 1 1 1 1 1 1 1 1 1 1 1 348550000 0 348550000 20119 1242 18491 103321;103322 125193;125194 125194 2 VENQENVSNLVIEDTELK Unmodified 2072.0273 0.027343548 1482 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.38 1 3 4 4 2 10 3 68.962 68.777 2;3 3.0064E-70 21699 20211116_3428_TMUAki_TMT10x_P_F1 283.21 248.33 21547000 35815000 117590 35499000 27289000 37908000 26558000 21996000 20588000 23101000 27695000 20063000 33418000 1841000 36273000 26145000 38112000 26792000 23201000 21458000 22516000 26496000 9 9 4 9 9 9 9 9 9 9 9 14527000 23705000 56160 23753000 18959000 30483000 19601000 14899000 13721000 15434000 18585000 13526000 22119000 1227200 24329000 18192000 30289000 19666000 15951000 14389000 15052000 17778000 6 6 3 6 6 6 6 6 6 6 6 7020700 12110000 61432 11746000 8329900 7424200 6956800 7097300 6867000 7666900 9109400 6537100 11299000 613820 11944000 7953500 7822600 7125600 7249600 7069500 7464400 8718100 3 3 1 3 3 3 3 3 3 3 3 5320200000 2796700000 2523500000 20120 1482 18492 103323;103324;103325;103326;103327;103328;103329;103330;103331;103332;103333;103334;103335 125195;125196;125197;125198;125199;125200;125201;125202;125203;125204;125205;125206;125207;125208;125209;125210 125197 16 VEPFLPGHYEVLDLKPNGK Unmodified 2151.1364 0.13644049 554 P08243;P08243-2;P08243-3 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes no 0 0 0 1 By MS/MS By matching 7.67 0.471 1 2 2 1 65.154 65.402 4 1.3813E-23 20439 20211116_3436_TMUAki_TMT10x_P_F8 163.18 147.48 9583800 15899000 64761 15682000 17371000 32672000 17843000 16302000 15268000 15139000 14927000 8923900 14835000 953100 16267000 16671000 31868000 17994000 17366000 15633000 14833000 14410000 2 2 1 2 2 2 2 2 2 2 2 9583800 15899000 64761 15682000 17371000 32672000 17843000 16302000 15268000 15139000 14927000 8923900 14835000 953100 16267000 16671000 31868000 17994000 17366000 15633000 14833000 14410000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3067200000 2263000000 804240000 20121 554 18493 103336;103337;103338 125211;125212 125212 2 VEPGLGADNSVVR Unmodified 1311.6783 0.67827852 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By matching By MS/MS 2.33 0.471 2 1 1 2 42.009 41.829 2 2.8057E-16 13785 20211116_3441_TMUAki_TMT10x_S_F3 179.72 139.48 2176000 3207100 9641.9 4675000 1688700 1337500 1960100 2611900 3126800 2172200 3089100 2026000 2998000 172290 4615600 1626000 1597100 2010100 2578100 3128600 2139600 2981100 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2176000 3207100 9641.9 4675000 1688700 1337500 1960100 2611900 3126800 2172200 3089100 2026000 2998000 172290 4615600 1626000 1597100 2010100 2578100 3128600 2139600 2981100 3 3 2 3 3 3 3 3 3 3 3 175530000 54789000 120740000 20122 755 18494 103339;103340;103341 125213;125214;125215 125214 3 VEPIHAVVLPR Unmodified 1228.7292 0.72919187 2198 Q8N5A5;Q8N5A5-4;Q8N5A5-3;Q8N5A5-2 ZGPAT Zinc finger CCCH-type with G patch domain-containing protein yes no 0 0 0 0 By MS/MS 7 0 1 1 43.764 44.312 3 0.00015485 13483 20211116_3446_TMUAki_TMT10x_S_F7 91.701 65.763 724030 1245000 0 1334800 651590 659520 511410 1060400 1006900 860380 1076500 674120 1162100 55824 1345300 621050 722530 541410 1051900 1005100 848530 1036300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 724030 1245000 0 1334800 651590 659520 511410 1060400 1006900 860380 1076500 674120 1162100 55824 1345300 621050 722530 541410 1051900 1005100 848530 1036300 1 1 0 1 1 1 1 1 1 1 1 60181000 0 60181000 20123 2198 18495 103342 125216 125216 1 VEPSDRYPQCLCLSPTYELALQTGK Unmodified 2924.4048 0.40482913 2959 Q9NUU7;Q9NUU7-2 DDX19A ATP-dependent RNA helicase DDX19A yes no 0 0 0 1 By MS/MS 7 0 1 1 69.148 69.636 4 1.3845E-07 23390 20211116_3435_TMUAki_TMT10x_P_F7 86.551 73.096 8448900 14179000 309960 13470000 8489000 16705000 9404100 8673400 8112600 9160200 10019000 7869100 13228000 756770 13840000 8181500 16638000 9451100 9238400 8377400 8926300 9605500 3 3 2 3 3 3 3 3 3 3 3 8448900 14179000 309960 13470000 8489000 16705000 9404100 8673400 8112600 9160200 10019000 7869100 13228000 756770 13840000 8181500 16638000 9451100 9238400 8377400 8926300 9605500 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1258900000 1258900000 0 20124 2959 18496 103343 125217;125218;125219 125218 3 VEQATKPSFESGR Unmodified 1434.7103 0.71030693 969 P38159;P38159-2 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.021 35.075 3 1.752E-06 7416 20211116_3444_TMUAki_TMT10x_S_F5 115.63 98.426 6196200 9165700 252710 11556000 11699000 7771100 5918100 4553700 5610000 4593400 7270000 5771100 8561500 818070 11564000 11087000 8077900 6295700 4793400 5779600 4484500 6961700 3 3 2 3 3 3 3 3 3 3 3 5393900 7933600 243060 10018000 10946000 7172200 4993200 3905100 4901800 4035900 6255000 5024000 7410700 743260 10031000 10360000 7408700 5373300 4139200 5038800 3936300 5992100 2 2 1 2 2 2 2 2 2 2 2 802300 1232000 9641.6 1537800 752650 598900 924930 648630 708170 557520 1015000 747090 1150800 74807 1533200 726590 669150 922480 654240 740820 548250 969610 1 1 1 1 1 1 1 1 1 1 1 270390000 216760000 53631000 20125 969 18497 103344;103345;103346 125220;125221 125221 2 VEQLFQVMNGILAQDSACSQR Unmodified 2393.1468 0.14676395 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By matching 3.67 0.471 1 2 2 1 81.839 81.82 3 5.6718E-14 28988 20211116_3430_TMUAki_TMT10x_P_F3 128.04 118.88 1516700 2671700 0 2425000 1491000 2837900 1808600 1477500 1508800 1656500 2265100 1412100 2492100 110640 2497500 1436700 2835000 1808600 1576300 1574900 1610500 2161700 2 2 0 2 2 2 2 2 2 2 2 1516700 2671700 0 2425000 1491000 2837900 1808600 1477500 1508800 1656500 2265100 1412100 2492100 110640 2497500 1436700 2835000 1808600 1576300 1574900 1610500 2161700 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 366260000 267940000 98314000 20126 1433 18498 103347;103348;103349 125222;125223 125222 2 VEQLFQVMNGILAQDSACSQR Oxidation (M) 2409.1417 0.14167857 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 0 By MS/MS 7 0 1 1 75.11 75.217 3 1.9874E-07 26271 20211116_3446_TMUAki_TMT10x_S_F7 89.756 78.651 1843500 2590500 0 2325300 2147600 1845100 1962500 1906000 1474900 1890000 2133300 1716000 2416200 96301 2383800 2050600 1910700 1985300 1934300 1545200 1846500 2037500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1843500 2590500 0 2325300 2147600 1845100 1962500 1906000 1474900 1890000 2133300 1716000 2416200 96301 2383800 2050600 1910700 1985300 1934300 1545200 1846500 2037500 1 1 0 1 1 1 1 1 1 1 1 506180000 0 506180000 20127 1433 18498 103350 125224 125224 1945 1 VEQLGAEGNVEESQK Unmodified 1615.7689 0.76894402 2486 Q9Y383;Q96HJ9-2;Q9Y383-3;Q9Y383-2 LUC7L2 Putative RNA-binding protein Luc7-like 2 yes no 0 0 0 0 By MS/MS 3 0 1 1 41.649 41.704 3 3.4987E-05 12572 20211116_3430_TMUAki_TMT10x_P_F3 94.203 69.41 503860 740810 17877 917470 1538100 1083700 688390 396410 597390 367430 584070 469280 691920 72921 925980 1454600 1078300 739880 436860 611250 360040 563840 1 1 1 1 1 1 1 1 1 1 1 503860 740810 17877 917470 1538100 1083700 688390 396410 597390 367430 584070 469280 691920 72921 925980 1454600 1078300 739880 436860 611250 360040 563840 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38530000 38530000 0 20128 2486 18499 103351 125225 125225 1 VEQVLSLEPQHELK Unmodified 1647.8832 0.88318591 418 O95292;O95292-2 VAPB Vesicle-associated membrane protein-associated protein B/C yes no 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 57.234 57.323 3 7.1509E-14 16504 20211116_3444_TMUAki_TMT10x_S_F5 141.85 120.09 17804000 30065000 696690 34238000 28634000 33019000 21592000 26151000 24513000 22757000 25962000 16582000 28070000 2277000 34615000 27321000 33558000 22360000 26834000 24861000 22366000 25000000 5 5 5 5 5 5 5 5 5 5 5 10530000 18037000 346080 19583000 22536000 26747000 16163000 16421000 15084000 13338000 15628000 9807200 16836000 1363700 19976000 21469000 26574000 16694000 17125000 15411000 13153000 15058000 3 3 3 3 3 3 3 3 3 3 3 7273400 12028000 350610 14654000 6098200 6271400 5428900 9730400 9429300 9419300 10334000 6774900 11233000 913310 14639000 5851700 6983700 5665600 9709300 9449700 9212200 9941200 2 2 2 2 2 2 2 2 2 2 2 4012000000 2094000000 1918100000 20129 418 18500 103352;103353;103354;103355;103356;103357 125226;125227;125228;125229;125230 125230 5 VERADGYEPPVQESV Unmodified 1673.7897 0.78967946 1305 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 0 1 By MS/MS By MS/MS 2.17 0.687 1 3 2 4 2 44.762 44.613 2;3 8.9642E-28 11874 20211116_3428_TMUAki_TMT10x_P_F1 202.27 190.71 3987700 6225300 4329.8 9350300 9539300 8762500 5167800 5594900 6698500 4304800 6205600 3712400 5820500 345540 9309400 9032700 8891700 5517900 5809800 6730100 4257500 6001600 7 7 1 7 7 7 7 7 7 7 7 3148500 4999800 4329.8 7293100 9058800 8364500 4764600 4471500 5236500 3465000 4908200 2931200 4673900 293420 7294200 8574700 8367700 5072100 4712600 5295000 3425600 4744900 5 5 1 5 5 5 5 5 5 5 5 839120 1225500 0 2057300 480530 397940 403200 1123500 1461900 839800 1297400 781210 1146600 52119 2015200 458000 524050 445800 1097100 1435100 831880 1256600 2 2 0 2 2 2 2 2 2 2 2 1228500000 984620000 243870000 20130 1305 18501 103358;103359;103360;103361;103362;103363 125231;125232;125233;125234;125235;125236;125237 125231 7 VESHFDLELR Unmodified 1243.6197 0.619701 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 By MS/MS 4 0 1 1 47.938 48.086 3 0.036898 13609 20211116_3431_TMUAki_TMT10x_P_F4 54.584 36.719 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20131 1997 18502 103364 125238 125238 1 VETFSGVYKK Unmodified 1156.6128 0.61282471 1332 P62081 RPS7 40S ribosomal protein S7 yes yes 0 0 0 1 By MS/MS By matching 5.67 3.3 1 2 2 1 46.284 46.313 3 2.6826E-08 12519 20211116_3428_TMUAki_TMT10x_P_F1 124.1 97.43 2230600 3906000 97868 4265200 7514300 5950300 3264100 3106000 3375900 2709300 3711800 2077600 3646100 350140 4351000 7104200 5893900 3536600 3289600 3441400 2662400 3570200 1 1 1 1 1 1 1 1 1 1 1 2230600 3906000 97868 4265200 7514300 5950300 3264100 3106000 3375900 2709300 3711800 2077600 3646100 350140 4351000 7104200 5893900 3536600 3289600 3441400 2662400 3570200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 348660000 297970000 50692000 20132 1332 18503 103365;103366;103367 125239;125240 125239 2 VETGILRPGMVVTFAPVNITTEVK Oxidation (M) 2586.4091 0.40910987 1520 Q05639 EEF1A2 Elongation factor 1-alpha 2 yes yes 0 0 1 1 By MS/MS By MS/MS 3.67 3.09 4 4 4 6 6 74.591 74.521 3;4 3.7145E-22 23599 20211116_3447_TMUAki_TMT10x_S_F8 141.45 126.68 134120000 222800000 1723300 183030000 152590000 251190000 166560000 213980000 212360000 211700000 194590000 124890000 207750000 11469000 190550000 146690000 250850000 169630000 219370000 213410000 206860000 188270000 20 20 13 20 20 20 20 20 20 20 20 72675000 116190000 508310 95996000 63278000 159670000 81915000 111550000 112390000 113200000 101700000 67662000 108350000 5240800 100310000 61100000 157650000 83059000 115900000 112630000 110490000 98439000 8 8 4 8 8 8 8 8 8 8 8 61449000 106600000 1215000 87033000 89314000 91518000 84641000 102430000 99970000 98504000 92891000 57223000 99399000 6228600 90237000 85589000 93201000 86574000 103480000 100780000 96366000 89828000 12 12 9 12 12 12 12 12 12 12 12 52978000000 30009000000 22968000000 20133 1520 18504 103368;103369;103370;103371;103372;103373;103374;103375;103376;103377;103378;103379 125241;125242;125243;125244;125245;125246;125247;125248;125249;125250;125251;125252;125253;125254;125255;125256;125257;125258;125259;125260 125259 2060 20 VETGILRPGMVVTFAPVNITTEVK Unmodified 2570.4142 0.41419525 1520 Q05639 EEF1A2 Elongation factor 1-alpha 2 yes yes 0 0 0 1 By MS/MS By MS/MS 2.25 0.75 3 6 7 5 11 71.544 71.482 3;4 3.7868E-48 26719 20211116_3429_TMUAki_TMT10x_P_F2 209.56 180.17 187950000 296080000 3101900 305720000 209180000 215790000 231890000 89300000 65535000 107490000 195430000 175020000 276310000 18185000 309860000 201290000 222540000 228880000 97722000 78560000 104230000 184510000 23 23 15 23 23 23 23 23 23 23 23 104120000 161020000 2650600 168870000 95277000 141910000 124990000 47109000 33256000 59212000 106760000 96963000 150270000 10950000 171320000 92262000 144100000 122390000 53044000 40455000 57331000 100710000 9 9 7 9 9 9 9 9 9 9 9 83835000 135070000 451280 136860000 113900000 73882000 106910000 42191000 32279000 48276000 88673000 78058000 126040000 7235400 138550000 109030000 78438000 106490000 44679000 38105000 46899000 83794000 14 14 8 14 14 14 14 14 14 14 14 31585000000 18688000000 12896000000 20134 1520 18504 103380;103381;103382;103383;103384;103385;103386;103387;103388;103389;103390;103391;103392;103393;103394;103395 125261;125262;125263;125264;125265;125266;125267;125268;125269;125270;125271;125272;125273;125274;125275;125276;125277;125278;125279;125280;125281;125282;125283 125266 23 VETGVLKPGMVVTFAPVNVTTEVK Oxidation (M) 2530.3717 0.37166174 1416 P68104;Q5VTE0 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 0 0 1 1 By MS/MS By MS/MS 3.19 2.66 38 23 8 2 1 5 6 15 51 47 67.865 67.833 2;3;4;5 2.2172E-59 22321 20211116_3428_TMUAki_TMT10x_P_F1 226.74 199.77 1047100000 1766700000 11840000 1499300000 1061500000 1920200000 1163800000 1626400000 1619900000 1588200000 1409800000 974990000 1647500000 87498000 1554700000 1020600000 1923600000 1189300000 1667300000 1620600000 1552700000 1366500000 165 166 91 166 166 166 166 166 166 166 165 644380000 1059300000 8312800 910870000 578940000 1428200000 717730000 983790000 985740000 938850000 850130000 600010000 987840000 54192000 947460000 558860000 1413100000 729060000 1021300000 986280000 918780000 824290000 75 76 41 76 76 76 76 76 76 76 76 402730000 707400000 3527600 588390000 482510000 491940000 446090000 642610000 634160000 649330000 559710000 374980000 659630000 33305000 607220000 461710000 510490000 460210000 645960000 634270000 633900000 542230000 90 90 50 90 90 90 90 90 90 90 89 436420000000 240330000000 196090000000 20135 1416 18505 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125284;125285;125286;125287;125288;125289;125290;125291;125292;125293;125294;125295;125296;125297;125298;125299;125300;125301;125302;125303;125304;125305;125306;125307;125308;125309;125310;125311;125312;125313;125314;125315;125316;125317;125318;125319;125320;125321;125322;125323;125324;125325;125326;125327;125328;125329;125330;125331;125332;125333;125334;125335;125336;125337;125338;125339;125340;125341;125342;125343;125344;125345;125346;125347;125348;125349;125350;125351;125352;125353;125354;125355;125356;125357;125358;125359;125360;125361;125362;125363;125364;125365;125366;125367;125368;125369;125370;125371;125372;125373;125374;125375;125376;125377;125378;125379;125380;125381;125382;125383;125384;125385;125386;125387;125388;125389;125390;125391;125392;125393;125394;125395;125396;125397;125398;125399;125400;125401;125402;125403;125404;125405;125406;125407;125408;125409;125410;125411;125412;125413;125414;125415;125416;125417;125418;125419;125420;125421;125422;125423;125424;125425;125426;125427;125428;125429;125430;125431;125432;125433;125434;125435;125436;125437;125438;125439;125440;125441;125442;125443;125444;125445;125446;125447;125448;125449;125450;125451 125293 1905 168 VETGVLKPGMVVTFAPVNVTTEVK Unmodified 2514.3767 0.37674711 1416 P68104;Q5VTE0 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 0 0 0 1 By MS/MS By MS/MS 2.68 2.01 52 72 34 7 2 3 4 16 83 107 71.6 71.562 2;3;4;5 1.4702E-70 26262 20211116_3429_TMUAki_TMT10x_P_F2 242.67 220.79 1305600000 2083800000 7937200 2186500000 1203700000 1209600000 1390400000 483250000 349310000 596620000 1208600000 1215600000 1944800000 93681000 2208700000 1159000000 1275400000 1368400000 531340000 431400000 578020000 1139300000 267 268 141 267 267 267 268 266 265 266 268 644290000 975440000 3724100 1030500000 558850000 755700000 695690000 237780000 163960000 285640000 579590000 599920000 910400000 42791000 1043300000 539430000 775170000 682050000 269320000 204810000 277000000 546250000 126 127 61 126 126 127 127 125 124 125 127 661290000 1108400000 4213200 1156000000 644890000 453870000 694710000 245470000 185350000 310980000 629050000 615720000 1034400000 50890000 1165400000 619550000 500260000 686310000 262020000 226590000 301020000 593080000 141 141 80 141 141 140 141 141 141 141 141 430860000000 245790000000 185070000000 20136 1416 18505 103494;103495;103496;103497;103498;103499;103500;103501;103502;103503;103504;103505;103506;103507;103508;103509;103510;103511;103512;103513;103514;103515;103516;103517;103518;103519;103520;103521;103522;103523;103524;103525;103526;103527;103528;103529;103530;103531;103532;103533;103534;103535;103536;103537;103538;103539;103540;103541;103542;103543;103544;103545;103546;103547;103548;103549;103550;103551;103552;103553;103554;103555;103556;103557;103558;103559;103560;103561;103562;103563;103564;103565;103566;103567;103568;103569;103570;103571;103572;103573;103574;103575;103576;103577;103578;103579;103580;103581;103582;103583;103584;103585;103586;103587;103588;103589;103590;103591;103592;103593;103594;103595;103596;103597;103598;103599;103600;103601;103602;103603;103604;103605;103606;103607;103608;103609;103610;103611;103612;103613;103614;103615;103616;103617;103618;103619;103620;103621;103622;103623;103624;103625;103626;103627;103628;103629;103630;103631;103632;103633;103634;103635;103636;103637;103638;103639;103640;103641;103642;103643;103644;103645;103646;103647;103648;103649;103650;103651;103652;103653;103654;103655;103656;103657;103658;103659;103660;103661;103662;103663;103664;103665;103666;103667;103668;103669;103670;103671;103672;103673;103674;103675;103676;103677;103678;103679;103680;103681;103682;103683 125452;125453;125454;125455;125456;125457;125458;125459;125460;125461;125462;125463;125464;125465;125466;125467;125468;125469;125470;125471;125472;125473;125474;125475;125476;125477;125478;125479;125480;125481;125482;125483;125484;125485;125486;125487;125488;125489;125490;125491;125492;125493;125494;125495;125496;125497;125498;125499;125500;125501;125502;125503;125504;125505;125506;125507;125508;125509;125510;125511;125512;125513;125514;125515;125516;125517;125518;125519;125520;125521;125522;125523;125524;125525;125526;125527;125528;125529;125530;125531;125532;125533;125534;125535;125536;125537;125538;125539;125540;125541;125542;125543;125544;125545;125546;125547;125548;125549;125550;125551;125552;125553;125554;125555;125556;125557;125558;125559;125560;125561;125562;125563;125564;125565;125566;125567;125568;125569;125570;125571;125572;125573;125574;125575;125576;125577;125578;125579;125580;125581;125582;125583;125584;125585;125586;125587;125588;125589;125590;125591;125592;125593;125594;125595;125596;125597;125598;125599;125600;125601;125602;125603;125604;125605;125606;125607;125608;125609;125610;125611;125612;125613;125614;125615;125616;125617;125618;125619;125620;125621;125622;125623;125624;125625;125626;125627;125628;125629;125630;125631;125632;125633;125634;125635;125636;125637;125638;125639;125640;125641;125642;125643;125644;125645;125646;125647;125648;125649;125650;125651;125652;125653;125654;125655;125656;125657;125658;125659;125660;125661;125662;125663;125664;125665;125666;125667;125668;125669;125670;125671;125672;125673;125674;125675;125676;125677;125678;125679;125680;125681;125682;125683;125684;125685;125686;125687;125688;125689;125690;125691;125692;125693;125694;125695;125696;125697;125698;125699;125700;125701;125702;125703;125704;125705;125706;125707;125708;125709;125710;125711;125712;125713;125714;125715;125716;125717;125718;125719;125720;125721;125722;125723;125724 125521 273 VETPVLPPVLVPR Unmodified 1414.8548 0.85478632 1452 P84022;Q15796;O15198;P84022-3;P84022-2;O15198-2;Q15796-2 SMAD3;SMAD2;SMAD9 Mothers against decapentaplegic homolog 3;Mothers against decapentaplegic homolog 2;Mothers against decapentaplegic homolog 9 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 71.499 71.84 2 2.0709E-12 22609 20211116_3447_TMUAki_TMT10x_S_F8 136.52 112.96 3432200 5635100 56319 4851700 3602900 6512600 4004700 4050400 4071100 4035800 4413200 3196100 5255200 339430 5029700 3468100 6476800 4043100 4242000 4150900 3942100 4246700 1 1 1 1 1 1 1 1 1 1 1 3432200 5635100 56319 4851700 3602900 6512600 4004700 4050400 4071100 4035800 4413200 3196100 5255200 339430 5029700 3468100 6476800 4043100 4242000 4150900 3942100 4246700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 370490000 370490000 0 20137 1452 18506 103684;103685;103686 125725;125726;125727 125727 3 VEVDGSIMEGGGQILR Oxidation (M) 1674.8247 0.82468476 88 O00442;O00442-2 RTCA RNA 3'-terminal phosphate cyclase yes no 0 0 1 0 By MS/MS 3 0 1 1 52.987 52.613 3 0.049371 18205 20211116_3441_TMUAki_TMT10x_S_F3 40.857 20.272 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20138 88 18507 103687 125728 125728 70 1 VEVERDNLAEDIMR Oxidation (M) 1703.8148 0.81484835 561 P08670 VIM Vimentin yes yes 0 0 1 1 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 42.998 42.875 3 4.2652E-06 11159 20211116_3428_TMUAki_TMT10x_P_F1 105.46 85.451 5254800 9439200 8830.2 10159000 13131000 14442000 7747200 12571000 12872000 9723800 10422000 4891800 8810500 433100 10377000 12448000 14406000 8298500 12791000 12784000 9614100 10129000 6 6 2 6 6 6 6 6 6 6 6 3228000 5781000 0 6282400 11309000 12483000 6189700 7935200 7906800 6160900 6732900 3004700 5396200 269130 6466400 10708000 12232000 6599400 8244400 7927100 6090200 6531300 3 3 0 3 3 3 3 3 3 3 3 2026700 3658200 8830.2 3876400 1822100 1959300 1557500 4636100 4965100 3562900 3688600 1887100 3414300 163970 3910500 1740400 2174400 1699200 4546400 4856700 3523900 3597800 3 3 2 3 3 3 3 3 3 3 3 2116400000 1350600000 765870000 20139 561 18508 103688;103689;103690;103691;103692;103693 125729;125730;125731;125732;125733;125734 125729 523 6 VEVERDNLAEDIMR Unmodified 1687.8199 0.81993373 561 P08670 VIM Vimentin yes yes 0 0 0 1 By MS/MS By MS/MS 1.8 0.748 2 2 1 3 2 52.482 52.482 3 1.4502E-52 17088 20211116_3439_TMUAki_TMT10x_S_F1 264.92 222.13 3811700 6222800 24571 6469900 6434300 6805500 5570700 3736500 3136000 3270300 4544000 3549200 5807400 375650 6587900 6149300 6843300 5620400 3939900 3346900 3213200 4339900 1 1 1 1 1 1 1 1 1 1 1 3811700 6222800 24571 6469900 6434300 6805500 5570700 3736500 3136000 3270300 4544000 3549200 5807400 375650 6587900 6149300 6843300 5620400 3939900 3346900 3213200 4339900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 808330000 808330000 0 20140 561 18508 103694;103695;103696;103697;103698 125735;125736;125737;125738;125739 125738 5 VEVGTEVTDYR Unmodified 1266.6092 0.6091959 1591 Q13085;Q13085-4;Q13085-3;Q13085-2 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 0 0 0 0 By matching By MS/MS 3 0 2 1 1 43.98 43.833 2 1.852E-06 14652 20211116_3441_TMUAki_TMT10x_S_F3 130.79 68.071 633030 946260 0 1154800 566420 429520 518520 841860 774700 698750 833600 589300 883740 36415 1152500 540920 491570 536390 830850 779010 688330 802320 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 633030 946260 0 1154800 566420 429520 518520 841860 774700 698750 833600 589300 883740 36415 1152500 540920 491570 536390 830850 779010 688330 802320 1 1 0 1 1 1 1 1 1 1 1 84253000 42309000 41944000 20141 1591 18509 103699;103700 125740 125740 1 VEVRPMMYVALTYDHR Oxidation (M) 1994.9706 0.97063749 960 P36957;P36957-2 DLST Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial yes no 0 0 1 1 By MS/MS 8 0 1 1 51.894 51.986 4 0.035104 14980 20211116_3436_TMUAki_TMT10x_P_F8 41.86 29.945 1901900 3320300 0 2965600 3615100 4519200 2269500 2592100 2553500 2525400 2561500 1770700 3096900 158600 3073700 3431000 4464700 2381200 2730700 2585600 2469200 2470700 1 1 0 1 1 1 1 1 1 1 1 1901900 3320300 0 2965600 3615100 4519200 2269500 2592100 2553500 2525400 2561500 1770700 3096900 158600 3073700 3431000 4464700 2381200 2730700 2585600 2469200 2470700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 201440000 201440000 0 20142 960 18510 103701 125741 125741 1215 1 VEVSVSCR Unmodified 934.45422 0.45421558 2130 Q86YQ8 CPNE8 Copine-8 yes yes 0 0 0 0 By MS/MS 3 0 1 1 33.837 33.598 2 0.061249 10455 20211116_3441_TMUAki_TMT10x_S_F3 62.464 39.393 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20143 2130 18511 103702 125742 125742 1 VEVTEFEDIK Unmodified 1207.5972 0.59723423 1478 Q01105;Q01105-2;Q01105-3;Q01105-4;P0DME0 SET;SETSIP Protein SET;Protein SETSIP yes no 0 0 0 0 By MS/MS By MS/MS 2.65 1.23 4 4 4 4 1 9 8 63.181 63.004 2;3 2.5778E-19 20134 20211116_3442_TMUAki_TMT10x_S_F4 253.98 170.97 261200000 395100000 1124600 517060000 291550000 299840000 227150000 264440000 312240000 276270000 328930000 243200000 369130000 21186000 515630000 277870000 318060000 236410000 271000000 314510000 269340000 316790000 20 20 11 20 20 20 20 20 20 20 20 90840000 135980000 735660 172970000 177310000 183770000 106640000 92493000 108930000 94945000 112710000 84585000 127020000 9268300 174010000 168270000 184500000 111930000 98721000 110850000 92627000 108610000 10 10 7 10 10 10 10 10 10 10 10 170360000 259120000 388970 344090000 114240000 116070000 120510000 171950000 203300000 181330000 216210000 158610000 242110000 11917000 341620000 109600000 133560000 124480000 172280000 203660000 176710000 208170000 10 10 4 10 10 10 10 10 10 10 10 38352000000 21797000000 16555000000 20144 1478 18512 103703;103704;103705;103706;103707;103708;103709;103710;103711;103712;103713;103714;103715;103716;103717;103718;103719 125743;125744;125745;125746;125747;125748;125749;125750;125751;125752;125753;125754;125755;125756;125757;125758;125759;125760;125761;125762;125763;125764 125763 22 VEVTEFEDIKSGYR Unmodified 1670.8152 0.81516593 1478 Q01105;Q01105-2;Q01105-3;Q01105-4;P0DME0 SET;SETSIP Protein SET;Protein SETSIP yes no 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 59.644 59.654 3 2.1159E-23 18306 20211116_3431_TMUAki_TMT10x_P_F4 184.51 151.52 8636800 15918000 91663 13849000 14535000 26156000 13491000 29142000 27506000 23394000 18383000 8042200 14845000 859790 14458000 13914000 25954000 14173000 29307000 27046000 23085000 18016000 3 3 2 3 3 3 3 3 3 3 3 5534400 9358500 65218 7949000 9926300 20775000 10083000 18592000 17341000 14930000 11511000 5153400 8727200 556840 8400600 9524100 20324000 10444000 18903000 17117000 14732000 11285000 2 2 1 2 2 2 2 2 2 2 2 3102400 6559200 26446 5899600 4608600 5381100 3407900 10550000 10165000 8464000 6871900 2888800 6118000 302950 6057400 4390300 5630000 3728800 10404000 9928700 8352300 6731000 1 1 1 1 1 1 1 1 1 1 1 912110000 441360000 470750000 20145 1478 18513 103720;103721 125765;125766;125767 125766 3 VEVYPVELLLVR Unmodified 1427.8388 0.8388019 1163 P51784 USP11 Ubiquitin carboxyl-terminal hydrolase 11 yes yes 0 0 0 0 By MS/MS 6 0 1 1 79.937 79.929 2 0.001933 26094 20211116_3445_TMUAki_TMT10x_S_F6 78.655 50.913 2353500 4109500 59665 3721800 3307100 2752800 3530800 2133800 2240000 2445000 3271800 2191800 3833100 264080 3809800 3180200 2850200 3529800 2210100 2371900 2375100 3124200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2353500 4109500 59665 3721800 3307100 2752800 3530800 2133800 2240000 2445000 3271800 2191800 3833100 264080 3809800 3180200 2850200 3529800 2210100 2371900 2375100 3124200 1 1 1 1 1 1 1 1 1 1 1 357590000 0 357590000 20146 1163 18514 103722 125768 125768 1 VEWSAFLEAADNLR Unmodified 1619.7944 0.79437091 3131 Q9UI30 TRMT112 Multifunctional methyltransferase subunit TRM112-like protein yes yes 0 0 0 0 By MS/MS 5 0.816 1 1 1 3 80.023 80.019 2 2.052E-13 25824 20211116_3444_TMUAki_TMT10x_S_F5 126.1 77.305 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20147 3131 18515 103723;103724;103725 125769;125770;125771 125770 3 VEYHFLSPYVSPK Unmodified 1564.7926 0.79257999 480 P02786 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 3.09 2 1 1 2 3 3 59.064 59.031 3 1.1383E-11 17707 20211116_3436_TMUAki_TMT10x_P_F8 143.42 109.74 23769000 43032000 281080 45297000 32751000 35633000 27460000 30704000 28125000 28451000 29796000 22133000 40162000 2358300 45906000 31287000 36786000 28151000 31399000 28642000 27880000 28691000 5 5 5 5 5 5 5 5 5 5 5 9179600 17361000 54914 18318000 14620000 21718000 12989000 11234000 10724000 10995000 10947000 8547500 16204000 888430 18670000 13981000 21679000 13191000 11944000 11017000 10748000 10553000 2 2 2 2 2 2 2 2 2 2 2 14589000 25670000 226160 26979000 18131000 13916000 14471000 19470000 17400000 17456000 18849000 13585000 23958000 1469900 27236000 17306000 15107000 14960000 19455000 17625000 17131000 18138000 3 3 3 3 3 3 3 3 3 3 3 5004300000 3405900000 1598400000 20148 480 18516 103726;103727;103728;103729;103730;103731 125772;125773;125774;125775;125776;125777;125778 125774 7 VEYLDDRNTFR Unmodified 1426.6841 0.68409218 491 P04637;P04637-4;P04637-7;P04637-8;P04637-9;P04637-5;P04637-6;P04637-2;P04637-3 TP53 Cellular tumor antigen p53 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 42.863 42.843 3 2.9177E-11 11890 20211116_3442_TMUAki_TMT10x_S_F4 167.71 133.32 2355500 4030400 76012 5250300 3138200 2819100 2267700 3741800 3949000 3040100 3854500 2193800 3765300 277090 5233600 2991800 3042600 2397800 3736900 3940500 2998000 3721200 3 3 3 3 3 3 3 3 3 3 3 516720 783670 15311 1076500 1543800 1385500 753600 679360 798420 623190 774070 481240 732340 71494 1082200 1461300 1376500 807110 724680 809430 610950 747470 1 1 1 1 1 1 1 1 1 1 1 1838800 3246700 60701 4173800 1594400 1433600 1514100 3062500 3150600 2416900 3080500 1712500 3033000 205600 4151500 1530500 1666000 1590700 3012200 3131100 2387000 2973800 2 2 2 2 2 2 2 2 2 2 2 228090000 42801000 185290000 20149 491 18517 103732;103733;103734;103735 125779;125780;125781;125782 125782 4 VEYSEEELK Unmodified 1124.5237 0.52373493 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 0 By MS/MS By MS/MS 2.25 0.829 1 1 2 2 2 45.092 44.983 2 7.2128E-06 12043 20211116_3428_TMUAki_TMT10x_P_F1 159.37 117.26 6571700 10932000 26309 14020000 10616000 6833500 5229200 10013000 11402000 7499200 10900000 6119000 10212000 615590 13978000 10045000 7476200 5777000 9944500 11312000 7427700 10530000 3 3 2 3 3 3 3 3 3 3 3 1552200 2360800 16642 3252600 6600200 3377100 2023700 1462900 1815900 1198600 2020600 1445300 2206200 214890 3257100 6214500 3389700 2285600 1576100 1863700 1181500 1942900 1 1 1 1 1 1 1 1 1 1 1 5019500 8570900 9667.1 10768000 4016200 3456300 3205500 8549800 9586000 6300600 8879000 4673700 8005800 400690 10720000 3830400 4086500 3491400 8368500 9447800 6246200 8587100 2 2 1 2 2 2 2 2 2 2 2 257690000 102040000 155650000 20150 647 18518 103736;103737;103738;103739 125783;125784;125785;125786 125783 4 VEYTLGEESEAPGQR Unmodified 1663.7689 0.76894402 1511 Q04637;Q04637-3;Q04637-8;Q04637-5;Q04637-4;Q04637-9;Q04637-6;Q04637-7 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 44.508 44.506 3 0.00060011 12025 20211116_3440_TMUAki_TMT10x_S_F2 72.615 57.584 3719900 5966200 64693 7309900 6395200 5895900 4405700 4323000 4869700 4060100 5475100 3464100 5572100 404530 7341300 6085800 6058200 4587300 4466800 4955200 3976100 5262900 2 2 1 2 2 2 2 2 2 2 2 2478900 3760100 64693 4733900 5207400 4599100 3055600 2479300 3086100 2438800 3480200 2308500 3512200 304020 4758500 4942900 4646000 3212900 2626500 3152200 2383500 3345000 1 1 1 1 1 1 1 1 1 1 1 1241100 2206100 0 2576100 1187800 1296700 1350100 1843700 1783600 1621300 1994900 1155600 2059900 100510 2582700 1142900 1412200 1374400 1840300 1803000 1592600 1917800 1 1 0 1 1 1 1 1 1 1 1 218180000 129860000 88323000 20151 1511 18519 103740;103741 125787;125788 125788 2 VFADYEAYMQCQAQVDQLYR Oxidation (M) 2513.0991 0.099145057 620 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 1 0 By MS/MS 3 0 1 1 75.425 75.286 3 0.00089609 26368 20211116_3430_TMUAki_TMT10x_P_F3 61.561 56.851 1014900 1808000 54072 1655300 1087000 2207900 1357400 1233300 1230000 1251100 1584700 945370 1686500 135550 1707700 1052300 2193200 1358800 1303700 1269500 1221200 1517700 1 1 1 1 1 1 1 1 1 1 1 1014900 1808000 54072 1655300 1087000 2207900 1357400 1233300 1230000 1251100 1584700 945370 1686500 135550 1707700 1052300 2193200 1358800 1303700 1269500 1221200 1517700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 116460000 116460000 0 20152 620 18520 103742 125789 125789 633 1 VFAETHYPDIYTR Unmodified 1610.7729 0.77290718 136;2573 O14813;Q99453 PHOX2A;PHOX2B Paired mesoderm homeobox protein 2A;Paired mesoderm homeobox protein 2B no no 0 0 0 0 By MS/MS By MS/MS 5.5 1.12 2 2 2 2 4 4 50.234 50.433 3 9.7601E-10 13685 20211116_3444_TMUAki_TMT10x_S_F5 136.3 121.83 15489000 25824000 68444 30439000 20552000 23430000 15612000 20517000 20436000 18746000 21513000 14421000 24114000 1245200 30622000 19575000 24236000 16244000 20954000 20617000 18381000 20719000 8 8 2 8 8 8 8 8 8 8 8 6079000 10094000 0 12579000 12094000 15533000 8047300 7810500 8351800 7295600 7925400 5659500 9428200 501230 12701000 11489000 15468000 8383800 8315500 8468100 7146500 7658600 3 3 0 3 3 3 3 3 3 3 3 9410400 15730000 68444 17860000 8458200 7897100 7564900 12706000 12084000 11450000 13587000 8761800 14686000 743980 17921000 8086100 8767700 7860000 12638000 12149000 11234000 13061000 5 5 2 5 5 5 5 5 5 5 5 2597500000 1237300000 1360200000 20153 136;2573 18521 103743;103744;103745;103746;103747;103748;103749;103750 125790;125791;125792;125793;125794;125795;125796;125797;125798 125795 9 VFAETHYPDIYTREELALK Unmodified 2294.1583 0.15829814 136;2573 O14813;Q99453 PHOX2A;PHOX2B Paired mesoderm homeobox protein 2A;Paired mesoderm homeobox protein 2B no no 0 0 0 1 By MS/MS By MS/MS 5.22 1.31 1 2 2 2 2 5 4 61.072 61.209 4 2.8246E-18 18420 20211116_3445_TMUAki_TMT10x_S_F6 158.45 139.16 76683000 128210000 1113500 133490000 89181000 121460000 86038000 80736000 73610000 76183000 91610000 71404000 119650000 7115800 135630000 85470000 123570000 87052000 84006000 76068000 74592000 87816000 11 11 9 11 11 11 11 11 11 11 11 44459000 73737000 565170 75410000 49836000 87325000 51830000 45496000 41425000 43639000 50349000 41398000 68811000 4069400 76991000 47855000 87286000 52147000 48313000 42915000 42697000 48294000 6 6 5 6 6 6 6 6 6 6 6 32224000 54472000 548370 58081000 39345000 34139000 34208000 35240000 32185000 32544000 41261000 30006000 50841000 3046400 58639000 37615000 36280000 34905000 35693000 33153000 31895000 39522000 5 5 4 5 5 5 5 5 5 5 5 10705000000 6094000000 4611200000 20154 136;2573 18522 103751;103752;103753;103754;103755;103756;103757;103758;103759 125799;125800;125801;125802;125803;125804;125805;125806;125807;125808;125809 125807 11 VFASELNAGIIK Unmodified 1260.7078 0.70778773 3064 Q9P2J5;Q9P2J5-2;Q9P2J5-3 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 7.43 0.495 4 3 4 3 68.351 68.58 2;3 6.1393E-20 23415 20211116_3446_TMUAki_TMT10x_S_F7 234.99 172.33 34980000 59205000 312720 59067000 46402000 60495000 43870000 55266000 55533000 53877000 53007000 32572000 55244000 3284800 60289000 44443000 61423000 44993000 56413000 55895000 52676000 51212000 6 6 4 6 6 6 6 6 6 6 6 13710000 23531000 41862 22976000 22934000 36281000 21106000 20971000 20571000 20367000 19767000 12766000 21955000 1275900 23677000 21945000 35796000 21487000 22076000 20922000 19916000 19093000 2 2 1 2 2 2 2 2 2 2 2 21270000 35674000 270860 36091000 23468000 24214000 22764000 34296000 34962000 33510000 33240000 19806000 33289000 2008800 36612000 22498000 25627000 23505000 34337000 34973000 32760000 32119000 4 4 3 4 4 4 4 4 4 4 4 4329200000 2199700000 2129500000 20155 3064 18523 103760;103761;103762;103763;103764;103765;103766 125810;125811;125812;125813;125814;125815;125816;125817 125814 8 VFASLPQVER Unmodified 1144.6241 0.6240581 307 O75083;O75083-3 WDR1 WD repeat-containing protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 56.071 56.513 2 0.00010432 17897 20211116_3435_TMUAki_TMT10x_P_F7 122.44 97.592 35231000 57373000 89952 63687000 42359000 41728000 32543000 46817000 42282000 41877000 47791000 32804000 53559000 3055400 64196000 40371000 43979000 33824000 47196000 42784000 41102000 45931000 4 4 3 4 4 4 4 4 4 4 4 6512200 10618000 20994 11062000 14528000 17239000 9444300 10279000 10275000 9013100 9743100 6063700 9909400 671740 11346000 13804000 17025000 9871300 10764000 10398000 8854800 9415300 1 1 1 1 1 1 1 1 1 1 1 28719000 46755000 68958 52624000 27830000 24489000 23099000 36538000 32007000 32863000 38048000 26740000 43649000 2383600 52850000 26567000 26954000 23953000 36432000 32386000 32248000 36516000 3 3 2 3 3 3 3 3 3 3 3 1692800000 875930000 816900000 20156 307 18524 103767;103768;103769 125818;125819;125820;125821 125818 4 VFCVEEEDSESSLQK Unmodified 1784.7775 0.77745979 1724 Q14684;Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 0 0 By MS/MS 3 0 1 1 57.673 57.27 3 2.8901E-05 20136 20211116_3441_TMUAki_TMT10x_S_F3 95.651 82.237 1151600 2386800 35507 2281000 1331700 1273700 1197600 1777700 1719100 1635900 1792900 1072500 2226700 131090 2319400 1275700 1371000 1237900 1777800 1728700 1603500 1727300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1151600 2386800 35507 2281000 1331700 1273700 1197600 1777700 1719100 1635900 1792900 1072500 2226700 131090 2319400 1275700 1371000 1237900 1777800 1728700 1603500 1727300 1 1 1 1 1 1 1 1 1 1 1 143590000 0 143590000 20157 1724 18525 103770 125822 125822 1 VFDFAGEEVR Unmodified 1167.556 0.55603812 3100 Q9UEE9;Q9UEE9-2 CFDP1 Craniofacial development protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.33 1.15 3 2 2 2 4 5 60.786 60.586 2 2.7E-08 21440 20211116_3441_TMUAki_TMT10x_S_F3 166.07 136.73 41961000 71179000 162120 72219000 55211000 67877000 45639000 64167000 58113000 56861000 60399000 39068000 66421000 3409600 73537000 52682000 69333000 47180000 65209000 58656000 55834000 58194000 9 9 3 9 9 9 9 9 9 9 9 19305000 31032000 125460 32665000 29252000 44109000 24910000 28825000 26926000 25982000 27076000 17974000 28962000 1648900 33380000 27933000 43886000 25557000 29994000 27310000 25493000 26115000 4 4 2 4 4 4 4 4 4 4 4 22656000 40147000 36662 39554000 25959000 23768000 20729000 35342000 31187000 30878000 33323000 21093000 37459000 1760700 40157000 24749000 25447000 21624000 35216000 31346000 30341000 32079000 5 5 1 5 5 5 5 5 5 5 5 3332100000 1933400000 1398700000 20158 3100 18526 103771;103772;103773;103774;103775;103776;103777;103778;103779 125823;125824;125825;125826;125827;125828;125829;125830;125831;125832;125833;125834 125832 12 VFDFTFSPEEMK Oxidation (M) 1491.6592 0.65918256 669 P14550 AKR1A1 Alcohol dehydrogenase [NADP(+)] yes yes 0 0 1 0 By MS/MS By MS/MS 5.5 0.806 1 4 4 1 4 6 76.449 76.445 2;3 1.5719E-05 25490 20211116_3433_TMUAki_TMT10x_P_F5 109.29 91.426 20649000 33123000 164250 29887000 25061000 35986000 26192000 28381000 28099000 28409000 28333000 19227000 30895000 1806700 30809000 24060000 36113000 26568000 29241000 28511000 27745000 27325000 8 8 5 8 8 8 8 8 8 8 8 10080000 16669000 87483 14770000 10942000 23186000 12940000 14634000 14477000 14372000 14373000 9385500 15547000 843950 15328000 10542000 22909000 13069000 15303000 14657000 14047000 13869000 4 4 2 4 4 4 4 4 4 4 4 10569000 16454000 76767 15117000 14119000 12800000 13252000 13747000 13623000 14037000 13960000 9841400 15348000 962790 15481000 13518000 13204000 13499000 13938000 13855000 13697000 13456000 4 4 3 4 4 4 4 4 4 4 4 2888900000 1024800000 1864100000 20159 669 18527 103780;103781;103782;103783;103784;103785;103786;103787;103788;103789 125835;125836;125837;125838;125839;125840;125841;125842;125843 125836 731 9 VFDFTFSPEEMK Unmodified 1475.6643 0.66426794 669 P14550 AKR1A1 Alcohol dehydrogenase [NADP(+)] yes yes 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 78.748 78.744 2 9.9516E-06 25335 20211116_3444_TMUAki_TMT10x_S_F5 110.38 80.908 6234600 9635000 76277 9343400 7421800 5148000 7448600 3314400 3211300 3972600 6488500 5805200 8989400 559860 9489600 7118700 5462100 7422900 3482100 3568700 3852700 6157800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6234600 9635000 76277 9343400 7421800 5148000 7448600 3314400 3211300 3972600 6488500 5805200 8989400 559860 9489600 7118700 5462100 7422900 3482100 3568700 3852700 6157800 2 2 1 2 2 2 2 2 2 2 2 830120000 0 830120000 20160 669 18527 103790;103791 125844;125845 125844 2 VFDGIPPPYDK Unmodified 1246.6234 0.6233894 983 P40429;Q6NVV1 RPL13A;RPL13AP3 60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3 yes no 0 0 0 0 By MS/MS By MS/MS 5.57 0.495 3 4 3 4 63.439 63.477 2;3 0.00024673 20035 20211116_3433_TMUAki_TMT10x_P_F5 96.331 59.14 34671000 58606000 211080 63136000 40307000 46315000 35177000 34966000 38117000 36756000 42790000 32283000 54703000 3109000 63838000 38530000 47965000 36041000 36177000 38814000 35824000 41133000 10 10 8 10 10 10 10 10 10 10 10 16487000 27074000 58543 29085000 24031000 31780000 19894000 16794000 18045000 17223000 20130000 15351000 25270000 1497700 29570000 22939000 31872000 20339000 17844000 18513000 16804000 19354000 5 5 4 5 5 5 5 5 5 5 5 18184000 31532000 152540 34051000 16277000 14536000 15283000 18171000 20071000 19533000 22660000 16932000 29432000 1611200 34268000 15590000 16093000 15702000 18333000 20302000 19021000 21779000 5 5 4 5 5 5 5 5 5 5 5 3701100000 1698700000 2002400000 20161 983 18528 103792;103793;103794;103795;103796;103797;103798 125846;125847;125848;125849;125850;125851;125852;125853;125854;125855 125846 10 VFDGIPPPYDKK Unmodified 1374.7184 0.71835242 983 P40429;Q6NVV1 RPL13A;RPL13AP3 60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3 yes no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 55.571 55.905 3 0.0016966 17678 20211116_3435_TMUAki_TMT10x_P_F7 75.479 56.883 39505000 68076000 404330 75378000 88041000 94839000 55287000 78372000 75748000 64401000 69465000 36786000 63549000 4331800 76673000 83619000 95045000 58426000 80096000 75942000 63473000 67205000 8 8 8 8 8 8 8 8 8 8 8 22976000 39356000 288920 44360000 72034000 79899000 42614000 47746000 45711000 37716000 40149000 21395000 36742000 2861200 45432000 68347000 78481000 44860000 49867000 46171000 37248000 38902000 4 4 4 4 4 4 4 4 4 4 4 16529000 28720000 115410 31018000 16007000 14940000 12672000 30626000 30037000 26685000 29316000 15391000 26807000 1470600 31241000 15271000 16565000 13566000 30229000 29772000 26224000 28303000 4 4 4 4 4 4 4 4 4 4 4 2846400000 1818100000 1028300000 20162 983 18529 103799;103800;103801;103802 125856;125857;125858;125859;125860;125861;125862;125863 125858 8 VFDKDGNGYISAAELR Unmodified 1753.8635 0.8635131 599 P0DP25;P0DP24;P0DP23 yes no 0 0 0 1 By MS/MS By MS/MS 5.56 1.26 1 1 1 4 2 6 3 56.46 56.647 2;3 4.8792E-41 16193 20211116_3434_TMUAki_TMT10x_P_F6 232.53 211.23 168390000 306460000 1448600 210020000 264860000 351360000 215710000 305550000 292140000 281880000 276080000 156790000 285600000 15397000 223180000 252730000 348200000 223740000 312270000 293290000 276280000 266820000 15 15 7 15 15 15 15 15 15 15 15 80296000 143250000 628360 105810000 163560000 247470000 144290000 138360000 134250000 127360000 127750000 74762000 133530000 7579300 112700000 156330000 240920000 147050000 145850000 136790000 124840000 123430000 11 11 5 11 11 11 11 11 11 11 11 88096000 163210000 820260 104210000 101300000 103890000 71428000 167190000 157890000 154520000 148330000 82029000 152070000 7817400 110480000 96402000 107280000 76691000 166420000 156500000 151440000 143390000 4 4 2 4 4 4 4 4 4 4 4 19053000000 12975000000 6077900000 20163 599 18530 103803;103804;103805;103806;103807;103808;103809;103810;103811 125864;125865;125866;125867;125868;125869;125870;125871;125872;125873;125874;125875;125876;125877;125878 125872 15 VFDMLNR Unmodified 893.44292 0.44292261 1277;1697 P60842;P60842-2;Q14240;Q14240-2 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 57.784 58.412 2 0.022622 19235 20211116_3446_TMUAki_TMT10x_S_F7 81.613 41.656 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20164 1277;1697 18531 103812;103813 125879;125880 125880 2 VFDMLNRR Oxidation (M) 1065.5389 0.53894826 1277;1697 P60842;P60842-2;Q14240;Q14240-2 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 0 0 1 1 By MS/MS By MS/MS 4.25 3.27 2 1 1 3 1 29.993 30.046 3 0.022937 8293 20211116_3428_TMUAki_TMT10x_P_F1 56.547 34.399 2407700 3880700 29871 3814900 5177400 4842900 2773700 3427000 3736200 2880500 3538000 2242000 3620900 263270 3911800 4905500 4838400 2969000 3539400 3751800 2835800 3419100 3 3 2 3 3 3 3 3 3 3 3 1832900 2857700 21183 2841600 4468200 4323800 2202100 2448800 2701800 2118900 2579200 1706800 2666400 205640 2922200 4228500 4271300 2367700 2574500 2722400 2083000 2491800 2 2 1 2 2 2 2 2 2 2 2 574810 1023100 8687.7 973220 709180 519020 571550 978180 1034400 761630 958870 535270 954430 57634 989580 677060 567080 601270 964890 1029400 752760 927320 1 1 1 1 1 1 1 1 1 1 1 481060000 351240000 129820000 20165 1277;1697 18532 103814;103815;103816;103817 125881;125882;125883 125881 1735 3 VFDMLNRR Unmodified 1049.544 0.54403364 1277;1697 P60842;P60842-2;Q14240;Q14240-2 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 47.681 47.498 3 0.00075852 14926 20211116_3430_TMUAki_TMT10x_P_F3 123.72 80.474 4693200 7538700 36006 9137000 10731000 6278500 5146900 2862000 2237400 2814500 6170300 4369900 7040400 477280 9165600 10149000 6495700 5422700 3080900 2543100 2750700 5830600 4 4 2 4 4 4 4 4 4 4 4 2577700 3996200 18947 4815600 8577500 5169200 3752400 1556100 1183000 1561500 3361900 2400100 3731900 291520 4860100 8102800 5163100 3979000 1764700 1393200 1524800 3175700 2 2 1 2 2 2 2 2 2 2 2 2115500 3542500 17059 4321500 2153600 1109300 1394600 1305900 1054400 1253000 2808400 1969800 3308500 185760 4305600 2046500 1332600 1443700 1316200 1149800 1225900 2654900 2 2 1 2 2 2 2 2 2 2 2 627250000 329390000 297860000 20166 1277;1697 18532 103818;103819;103820;103821 125884;125885;125886;125887 125885 4 VFDPVPVGVTK Unmodified 1156.6492 0.64921022 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 2 4 3 3 63.094 63.374 2;3 2.7261E-05 20764 20211116_3435_TMUAki_TMT10x_P_F7 106.4 88.887 79591000 138040000 1658200 124530000 118970000 149720000 104970000 108680000 95755000 100570000 112800000 74120000 128760000 8695600 128380000 113820000 150040000 106920000 112320000 98422000 98556000 108290000 5 5 5 5 5 5 5 5 5 5 5 49646000 84595000 996520 75126000 76309000 119960000 74558000 67365000 59377000 63609000 67985000 46233000 78900000 5418200 77980000 73185000 118260000 75249000 71034000 61376000 62279000 65316000 3 3 3 3 3 3 3 3 3 3 3 29945000 53450000 661690 49407000 42663000 29759000 30410000 41312000 36377000 36961000 44818000 27887000 49859000 3277500 50395000 40640000 31788000 31672000 41290000 37046000 36277000 42973000 2 2 2 2 2 2 2 2 2 2 2 3263400000 1831300000 1432100000 20167 1546 18533 103822;103823;103824;103825;103826;103827 125888;125889;125890;125891;125892;125893;125894 125890 7 VFDVIIR Unmodified 860.51199 0.51198846 637 P12081;P12081-4 HARS Histidine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By matching By MS/MS 7 0 2 1 1 63.115 63.679 2 0.01871 21441 20211116_3446_TMUAki_TMT10x_S_F7 89.369 30.682 3458200 5673100 0 6007700 3045200 3121800 3589300 2927000 2742600 3053800 3981000 3219900 5294800 278390 6062100 2933400 3354000 3586100 2989600 2871100 2977300 3802000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3458200 5673100 0 6007700 3045200 3121800 3589300 2927000 2742600 3053800 3981000 3219900 5294800 278390 6062100 2933400 3354000 3586100 2989600 2871100 2977300 3802000 1 1 0 1 1 1 1 1 1 1 1 551210000 209730000 341480000 20168 637 18534 103828;103829 125895 125895 1 VFEFGGPEVLK Unmodified 1220.6441 0.64412484 1547 Q08257;Q08257-3 CRYZ Quinone oxidoreductase yes no 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 73.004 72.961 2 6.9009E-08 23251 20211116_3445_TMUAki_TMT10x_S_F6 141.95 92.141 19800000 34258000 165620 32220000 25842000 25851000 24426000 23581000 23108000 24087000 26077000 18437000 31959000 1864500 32919000 24752000 26677000 24809000 24105000 23672000 23504000 25064000 4 4 3 4 4 4 4 4 4 4 4 4677900 8005000 87799 7620100 5584200 9103300 6182700 5454200 5760100 5789300 5888800 4356300 7468100 482350 7823100 5374700 9100400 6227000 5739600 5882900 5640300 5676700 1 1 1 1 1 1 1 1 1 1 1 15122000 26253000 77821 24600000 20258000 16747000 18243000 18127000 17348000 18298000 20188000 14080000 24491000 1382100 25096000 19378000 17576000 18582000 18366000 17789000 17864000 19387000 3 3 2 3 3 3 3 3 3 3 3 1453100000 503760000 949300000 20169 1547 18535 103830;103831;103832 125896;125897;125898;125899 125899 4 VFEGNRPTNSIVFTK Unmodified 1707.8944 0.8944193 522;55 CON__Q3ZBD7;P06744;P06744-2 GPI Glucose-6-phosphate isomerase no no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 52.413 52.179 3 3.6379E-19 16445 20211116_3429_TMUAki_TMT10x_P_F2 161.14 132.16 + 22011000 37295000 363770 45307000 27756000 31696000 20895000 25871000 28476000 26229000 29935000 20497000 34830000 2179600 45451000 26459000 32999000 21788000 26609000 28689000 25602000 28832000 5 5 4 5 5 5 5 5 5 5 5 9612500 15634000 135380 18604000 19880000 22092000 12803000 11284000 12328000 11389000 12256000 8950700 14599000 1002200 18822000 18888000 22048000 13342000 12021000 12560000 11118000 11825000 2 2 1 2 2 2 2 2 2 2 2 12398000 21661000 228390 26703000 7876200 9604300 8092100 14588000 16148000 14841000 17679000 11546000 20231000 1177400 26630000 7571300 10951000 8446200 14588000 16129000 14484000 17007000 3 3 3 3 3 3 3 3 3 3 3 1876100000 855170000 1020900000 20170 55;522 18536 103833;103834;103835;103836 125900;125901;125902;125903;125904;125905 125901 6 VFEHFLENLDK Unmodified 1389.6929 0.69286595 1108 P49642 PRIM1 DNA primase small subunit yes yes 0 0 0 0 By MS/MS By MS/MS 5.17 1.07 2 2 1 1 4 2 74.012 73.993 3 4.9386E-06 23332 20211116_3444_TMUAki_TMT10x_S_F5 115.33 77.963 6537600 10611000 28672 10211000 7441500 8755200 7926400 6585900 6557900 6562200 7825300 6087300 9899800 575410 10423000 7148800 8960200 7972400 6804800 6776400 6410000 7509600 3 3 2 3 3 3 3 3 3 3 3 2728600 4292600 0 4046600 2989200 4931300 3491900 2719900 2878500 2589600 3148100 2540500 4004600 223880 4158800 2878500 4919400 3496700 2873100 2964800 2534500 3028500 1 1 0 1 1 1 1 1 1 1 1 3809000 6318400 28672 6164200 4452200 3823900 4434500 3866000 3679300 3972600 4677200 3546800 5895200 351520 6264400 4270300 4040800 4475700 3931700 3811500 3875500 4481100 2 2 2 2 2 2 2 2 2 2 2 892970000 384700000 508270000 20171 1108 18537 103837;103838;103839;103840;103841;103842 125906;125907;125908;125909;125910;125911 125911 6 VFEPNEEALGVVLHK Unmodified 1679.8883 0.88827129 225 O43615 TIMM44 Mitochondrial import inner membrane translocase subunit TIM44 yes yes 0 0 0 0 By MS/MS 6 0 1 1 68.198 68.121 3 0.00072375 21255 20211116_3445_TMUAki_TMT10x_S_F6 70.197 52.28 16527000 27862000 417800 30193000 17235000 18580000 19510000 13831000 13761000 14559000 18462000 15392000 26007000 1769500 30464000 16608000 19538000 19493000 14324000 14418000 14189000 17664000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16527000 27862000 417800 30193000 17235000 18580000 19510000 13831000 13761000 14559000 18462000 15392000 26007000 1769500 30464000 16608000 19538000 19493000 14324000 14418000 14189000 17664000 3 3 3 3 3 3 3 3 3 3 3 604610000 0 604610000 20172 225 18538 103843 125912;125913;125914 125912 3 VFESIGK Unmodified 778.4225 0.42250475 924 P35232;P35232-2 PHB Prohibitin yes no 0 0 0 0 By matching By MS/MS 6.33 0.471 2 1 1 2 51.414 51.656 2 0.006242 14501 20211116_3445_TMUAki_TMT10x_S_F6 104.45 45.242 3970700 6605400 49090 6449200 3180400 3406200 4276600 3847400 4298300 3887400 5094600 3697500 6162900 363880 6544800 3080100 3667700 4281300 3890700 4400100 3795000 4890000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3970700 6605400 49090 6449200 3180400 3406200 4276600 3847400 4298300 3887400 5094600 3697500 6162900 363880 6544800 3080100 3667700 4281300 3890700 4400100 3795000 4890000 1 1 1 1 1 1 1 1 1 1 1 353590000 129860000 223730000 20173 924 18539 103844;103845;103846 125915 125915 1 VFEVMLATDR Oxidation (M) 1195.5907 0.59070906 764 P22061;P22061-2 PCMT1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes no 0 0 1 0 By MS/MS 4 0 1 1 57.113 57.258 2 0.016003 17316 20211116_3431_TMUAki_TMT10x_P_F4 65.404 49.742 7966300 12831000 170990 13489000 12025000 16175000 10891000 8612600 8614200 8181700 10302000 7418700 11975000 876660 13754000 11512000 16143000 11036000 9125500 8923000 8008400 9885900 1 1 1 1 1 1 1 1 1 1 1 7966300 12831000 170990 13489000 12025000 16175000 10891000 8612600 8614200 8181700 10302000 7418700 11975000 876660 13754000 11512000 16143000 11036000 9125500 8923000 8008400 9885900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1303000000 1303000000 0 20174 764 18540 103847 125916 125916 882 1 VFEVMLATDR Unmodified 1179.5958 0.59579444 764 P22061;P22061-2 PCMT1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes no 0 0 0 0 By matching By MS/MS 4.33 0.471 2 1 1 2 69.035 69.009 2 0.0056337 21342 20211116_3444_TMUAki_TMT10x_S_F5 75.652 55.323 7848300 12780000 39514 12141000 8715500 7128600 8098500 6985800 6048600 6628500 9295500 7307300 11923000 638460 12356000 8339700 7568100 8183400 7099200 6358400 6488500 8866600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7848300 12780000 39514 12141000 8715500 7128600 8098500 6985800 6048600 6628500 9295500 7307300 11923000 638460 12356000 8339700 7568100 8183400 7099200 6358400 6488500 8866600 2 2 1 2 2 2 2 2 2 2 2 1018800000 309190000 709630000 20175 764 18540 103848;103849;103850 125917;125918 125918 2 VFEVNASNLEK Unmodified 1248.635 0.63501672 3064 Q9P2J5 LARS Leucine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 By matching By MS/MS 4.5 0.5 2 2 1 3 57.931 57.998 2;3 3.6934E-07 16783 20211116_3444_TMUAki_TMT10x_S_F5 113.38 72.262 1722700 2823600 0 2988900 1939800 1684200 1605300 2693100 2728300 2411100 2730900 1603900 2635400 131790 3018000 1850600 1818900 1680600 2678800 2726500 2366400 2634300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1722700 2823600 0 2988900 1939800 1684200 1605300 2693100 2728300 2411100 2730900 1603900 2635400 131790 3018000 1850600 1818900 1680600 2678800 2726500 2366400 2634300 1 1 0 1 1 1 1 1 1 1 1 492600000 169180000 323430000 20176 3064 18541 103851;103852;103853;103854 125919;125920 125920 2 VFEVSLADLQNDEVAFR Unmodified 1950.9687 0.96870646 1305 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 0 0 By MS/MS By MS/MS 1.83 0.799 5 4 3 6 6 73.279 73.225 2;3 2.6478E-69 27519 20211116_3429_TMUAki_TMT10x_P_F2 299.04 257.04 17099000 29281000 77869 25800000 18095000 28432000 21213000 16970000 16209000 18515000 20676000 15920000 27310000 1358900 26606000 17424000 28545000 21199000 17879000 16867000 18019000 19808000 11 11 5 11 11 11 11 11 11 11 11 12629000 20568000 39679 18629000 11919000 22894000 14779000 12132000 11848000 13642000 14865000 11758000 19185000 928840 19205000 11493000 22817000 14750000 12923000 12289000 13261000 14246000 8 8 2 8 8 8 8 8 8 8 8 4469700 8713800 38189 7171400 6176200 5539000 6434300 4838300 4360700 4873600 5811300 4162000 8125100 430060 7400600 5930800 5727700 6448900 4955700 4578500 4758300 5561100 3 3 3 3 3 3 3 3 3 3 3 5873300000 3021100000 2852200000 20177 1305 18542 103855;103856;103857;103858;103859;103860;103861;103862;103863;103864;103865;103866 125921;125922;125923;125924;125925;125926;125927;125928;125929;125930;125931;125932;125933;125934 125926 14 VFEVSLADLQNDEVAFRK Unmodified 2079.0637 0.063669474 1305 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 0 1 By MS/MS By MS/MS 5.06 1.89 2 2 2 3 3 2 2 9 7 77.44 77.421 3;4 1.6845E-79 25062 20211116_3445_TMUAki_TMT10x_S_F6 302.34 285.27 114680000 200240000 945480 168590000 125800000 156100000 138710000 121980000 107620000 119820000 140590000 106780000 186720000 10232000 174040000 120990000 159030000 139060000 125680000 112020000 117110000 134600000 13 13 9 13 13 13 13 13 13 13 13 40999000 70234000 169580 58276000 35296000 73740000 44828000 44408000 38649000 41504000 49048000 38174000 65491000 3341200 60527000 34085000 73508000 44782000 46544000 39958000 40655000 46993000 6 6 4 6 6 6 6 6 6 6 6 73680000 130000000 775890 110310000 90507000 82364000 93878000 77576000 68974000 78317000 91545000 68608000 121230000 6890900 113510000 86903000 85523000 94277000 79138000 72060000 76458000 87612000 7 7 5 7 7 7 7 7 7 7 7 29414000000 14948000000 14466000000 20178 1305 18543 103867;103868;103869;103870;103871;103872;103873;103874;103875;103876;103877;103878;103879;103880;103881;103882 125935;125936;125937;125938;125939;125940;125941;125942;125943;125944;125945;125946;125947;125948;125949;125950 125947 16 VFFVHEGYQGLVDGGDHIK Unmodified 2116.0378 0.037789075 552 P08237;P08237-3;P08237-2 PFKM ATP-dependent 6-phosphofructokinase, muscle type yes no 0 0 0 0 By MS/MS 7 0 1 1 59.332 59.848 4 1.4744E-08 19844 20211116_3446_TMUAki_TMT10x_S_F7 112.56 97.306 11578000 20211000 75537 21203000 13776000 10686000 12684000 9794300 9224000 10201000 14463000 10781000 18862000 1030000 21404000 13184000 11515000 12816000 10015000 9721100 9945900 13790000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11578000 20211000 75537 21203000 13776000 10686000 12684000 9794300 9224000 10201000 14463000 10781000 18862000 1030000 21404000 13184000 11515000 12816000 10015000 9721100 9945900 13790000 2 2 1 2 2 2 2 2 2 2 2 674700000 0 674700000 20179 552 18544 103883 125951;125952 125951 2 VFFYNPTTR Unmodified 1143.5713 0.57129425 132 O14776;O14776-2 TCERG1 Transcription elongation regulator 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 58.993 58.688 2 0.0002179 19610 20211116_3430_TMUAki_TMT10x_P_F3 133.98 104.5 10997000 18601000 123300 17796000 15428000 21505000 13670000 16604000 15259000 15377000 15650000 10240000 17354000 1088700 18267000 14756000 21569000 14007000 17092000 15468000 15068000 15085000 3 3 3 3 3 3 3 3 3 3 3 6869100 11452000 89863 10805000 10649000 17526000 9795000 10724000 10041000 9954800 9775500 6396500 10683000 706190 11169000 10195000 17287000 9987800 11224000 10195000 9754100 9438300 2 2 2 2 2 2 2 2 2 2 2 4127600 7149400 33436 6990600 4778900 3979100 3875100 5879800 5218300 5422200 5874900 3843500 6670600 382490 7097700 4561500 4282100 4019500 5868500 5273200 5314400 5646900 1 1 1 1 1 1 1 1 1 1 1 788320000 534120000 254210000 20180 132 18545 103884;103885;103886 125953;125954;125955 125954 3 VFGAPNVVEDEIDQYLSK Unmodified 2021.9946 0.99458686 2264 Q8TAT6;Q8TAT6-2 NPLOC4 Nuclear protein localization protein 4 homolog yes no 0 0 0 0 By MS/MS By MS/MS 3.17 1.07 2 2 1 1 2 4 80.932 80.911 3 8.1848E-41 28117 20211116_3429_TMUAki_TMT10x_P_F2 207.92 193.61 20666000 31426000 258110 31157000 24976000 27170000 27833000 16826000 17393000 19298000 25356000 19242000 29323000 1777500 31745000 24020000 27693000 27760000 17704000 18434000 18745000 24213000 8 8 5 8 8 8 8 8 8 8 8 7088600 10559000 128770 10671000 6508900 11849000 7880500 6275100 5646500 6546700 8821300 6601200 9852700 699580 10896000 6283300 11873000 7852600 6669500 5954800 6382700 8411300 2 2 2 2 2 2 2 2 2 2 2 13578000 20868000 129340 20487000 18467000 15321000 19953000 10551000 11746000 12751000 16534000 12641000 19470000 1077900 20850000 17737000 15819000 19907000 11034000 12479000 12363000 15802000 6 6 3 6 6 6 6 6 6 6 6 5574000000 2826400000 2747600000 20181 2264 18546 103887;103888;103889;103890;103891;103892 125956;125957;125958;125959;125960;125961;125962;125963 125956 8 VFGFSLITNK Unmodified 1124.623 0.62299547 469 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 77.203 77.203 2 4.2846E-06 25797 20211116_3433_TMUAki_TMT10x_P_F5 143.21 96.292 37053000 63381000 14921 59320000 48118000 56867000 48289000 37503000 27854000 36151000 43585000 34499000 59126000 3178700 60766000 46139000 57649000 48340000 39067000 29789000 35362000 41558000 3 3 1 3 3 3 3 3 3 3 3 23236000 38144000 0 34744000 27455000 44592000 30684000 22684000 18212000 23063000 27833000 21635000 35579000 1923400 35832000 26402000 44328000 30569000 24181000 19415000 22508000 26551000 2 2 0 2 2 2 2 2 2 2 2 13817000 25237000 14921 24576000 20663000 12275000 17605000 14819000 9641300 13088000 15753000 12865000 23546000 1255300 24934000 19737000 13321000 17771000 14887000 10374000 12854000 15007000 1 1 1 1 1 1 1 1 1 1 1 2606700000 1672800000 933930000 20182 469 18547 103893;103894;103895;103896 125964;125965;125966 125965 3 VFGGTVHK Unmodified 843.46029 0.46028724 1128 P49915;P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 0 0 By MS/MS 1 0 1 1 35.48 35.446 3 0.027526 10143 20211116_3439_TMUAki_TMT10x_S_F1 53.775 35.044 377270 606080 8580.6 651100 391740 322520 392250 355940 345870 359710 469070 351340 565700 39478 656140 376150 349580 396410 360320 358270 351150 448680 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 377270 606080 8580.6 651100 391740 322520 392250 355940 345870 359710 469070 351340 565700 39478 656140 376150 349580 396410 360320 358270 351150 448680 1 1 1 1 1 1 1 1 1 1 1 19395000 0 19395000 20183 1128 18548 103897 125967 125967 1 VFGNEIK Unmodified 805.4334 0.43340378 729 P19338 NCL Nucleolin yes yes 0 0 0 0 By MS/MS By MS/MS 5.29 1.03 2 2 2 1 3 4 47.518 47.717 2 0.0012849 12866 20211116_3445_TMUAki_TMT10x_S_F6 139.31 31.64 39658000 61828000 522110 67641000 67848000 62688000 49127000 46104000 48819000 42889000 55475000 36929000 57714000 4084100 68521000 64612000 63795000 50801000 47616000 49915000 42020000 53308000 7 7 5 7 7 7 7 7 7 7 7 23412000 35041000 294000 38480000 52338000 48398000 29599000 26819000 29127000 25434000 31632000 21801000 32710000 2570300 39162000 49627000 48208000 31198000 28315000 29741000 24897000 30437000 4 4 3 4 4 4 4 4 4 4 4 16246000 26787000 228110 29161000 15510000 14289000 19528000 19285000 19692000 17456000 23842000 15128000 25004000 1513800 29359000 14985000 15587000 19603000 19301000 20173000 17123000 22871000 3 3 2 3 3 3 3 3 3 3 3 2639600000 1528800000 1110800000 20184 729 18549 103898;103899;103900;103901;103902;103903;103904 125968;125969;125970;125971;125972;125973;125974 125974 7 VFGNEIKLEKPK Unmodified 1400.8028 0.80275075 729 P19338 NCL Nucleolin yes yes 0 0 0 2 By MS/MS By MS/MS 5 3.29 2 1 2 3 2 50.035 50.105 4 1.068E-07 14233 20211116_3436_TMUAki_TMT10x_P_F8 137.84 123.58 68537000 99443000 302530 100890000 195170000 152330000 82109000 138290000 156110000 108330000 119180000 63809000 92796000 6677700 103600000 184250000 151690000 91489000 140410000 154260000 107040000 116120000 6 6 4 6 6 6 6 6 6 6 6 44295000 63256000 10409 60473000 167200000 133930000 66381000 83602000 96189000 65573000 76184000 41235000 59014000 4343400 62987000 157720000 130780000 73528000 87001000 95841000 64785000 74111000 4 4 2 4 4 4 4 4 4 4 4 24242000 36187000 292120 40422000 27973000 18396000 15728000 54685000 59918000 42760000 43000000 22574000 33782000 2334300 40608000 26532000 20915000 17962000 53412000 58423000 42253000 42005000 2 2 2 2 2 2 2 2 2 2 2 12917000000 8355800000 4561100000 20185 729 18550 103905;103906;103907;103908;103909 125975;125976;125977;125978;125979;125980 125978 6 VFHAGFGVVLGEDK Unmodified 1473.7616 0.76161421 1218 P54136;P54136-2 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.943 1 2 1 2 60.904 61.506 3 9.0221E-06 19956 20211116_3435_TMUAki_TMT10x_P_F7 101.32 86.348 19330000 33031000 325580 31301000 25997000 32058000 24528000 18642000 16468000 18054000 24163000 18001000 30815000 1999400 32066000 24910000 32311000 24707000 19613000 17379000 17657000 23071000 3 3 3 3 3 3 3 3 3 3 3 12894000 21434000 229180 20890000 18231000 25481000 16990000 12588000 11053000 11526000 15690000 12008000 19998000 1357400 21418000 17463000 25385000 17115000 13417000 11669000 11301000 14992000 2 2 2 2 2 2 2 2 2 2 2 6436200 11598000 96392 10411000 7766000 6577800 7538200 6054300 5415600 6527900 8473100 5993500 10817000 642070 10648000 7446500 6925700 7592600 6196200 5710800 6356000 8079100 1 1 1 1 1 1 1 1 1 1 1 1524500000 893590000 630900000 20186 1218 18551 103910;103911;103912 125981;125982;125983;125984 125981 4 VFHLLGVDTLVVTNAAGGLNPK Unmodified 2234.2423 0.24230254 469 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 78.359 78.323 3 8.1463E-11 27584 20211116_3430_TMUAki_TMT10x_P_F3 114.99 104 4700700 7534000 121340 6221700 4822400 6305500 5515600 4527400 4505300 4697700 5669600 4377700 7025100 504510 6441100 4648800 6378500 5527200 4697900 4668900 4581000 5433200 2 2 2 2 2 2 2 2 2 2 2 1871000 2891200 10695 2525800 1760900 3443200 2119500 1867300 1909800 1999900 2351900 1742200 2696400 163540 2616300 1698100 3415700 2124600 1982100 1967700 1947800 2255100 1 1 1 1 1 1 1 1 1 1 1 2829700 4642800 110640 3695900 3061600 2862300 3396100 2660000 2595500 2697800 3317800 2635500 4328700 340960 3824800 2950700 2962800 3402500 2715900 2701100 2633200 3178200 1 1 1 1 1 1 1 1 1 1 1 2700300000 1702300000 997960000 20187 469 18552 103913;103914;103915 125985;125986 125985 2 VFHLPTTTFIGGQESALPLR Unmodified 2183.1739 0.17388863 1491 Q02218;Q02218-2;Q02218-3 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 74.441 74.234 3 3.6787E-32 26967 20211116_3441_TMUAki_TMT10x_S_F3 185.33 174.38 5693100 9630300 141080 8942400 6647700 8892400 7695900 6582700 6861000 6894700 7719900 5301600 8983500 582040 9170500 6406800 9010200 7725700 6818700 7046900 6720900 7420500 5 5 4 5 5 5 5 5 5 5 5 2483200 3865700 74746 3560400 2540800 4741600 3169900 2756500 2963300 2898300 3356700 2312400 3606000 241530 3671400 2454300 4713000 3176000 2907000 3037700 2824800 3225900 2 2 1 2 2 2 2 2 2 2 2 3209900 5764600 66336 5382000 4106900 4150800 4526100 3826200 3897700 3996400 4363200 2989200 5377500 340510 5499100 3952500 4297200 4549600 3911700 4009300 3896100 4194600 3 3 3 3 3 3 3 3 3 3 3 532860000 270340000 262520000 20188 1491 18553 103916;103917 125987;125988;125989;125990;125991 125989 5 VFIGNLNTALVK Unmodified 1287.7551 0.75507227 3158 Q9UKM9;Q9UKM9-2 RALY RNA-binding protein Raly yes no 0 0 0 0 By MS/MS By MS/MS 3.57 0.495 3 4 3 4 72.701 72.557 2;3 2.536E-19 25298 20211116_3430_TMUAki_TMT10x_P_F3 225.01 0 42486000 74307000 261080 67089000 56136000 70932000 48828000 66568000 64794000 58688000 62950000 39559000 69310000 3678300 69009000 53640000 71925000 50405000 67666000 65153000 57642000 60783000 10 10 4 10 10 10 10 10 10 10 10 16303000 28221000 86663 24856000 24587000 42371000 22679000 25482000 25517000 22301000 23303000 15180000 26320000 1499900 25857000 23529000 41705000 23192000 26666000 25757000 21911000 22548000 4 4 2 4 4 4 4 4 4 4 4 26183000 46086000 174420 42233000 31549000 28561000 26149000 41086000 39277000 36387000 39648000 24379000 42989000 2178400 43152000 30111000 30221000 27213000 41001000 39396000 35731000 38235000 6 6 2 6 6 6 6 6 6 6 6 6514100000 3666100000 2848000000 20189 3158 18554 103918;103919;103920;103921;103922;103923;103924 125992;125993;125994;125995;125996;125997;125998;125999;126000;126001 125992 10 VFIGNLNTLVVK Unmodified 1315.7864 0.7863724 545 P07910-2;P07910-4;P07910;P07910-3;O60812;B7ZW38;B2RXH8;P0DMR1 HNRNPC;HNRNPCL1;HNRNPCL3;HNRNPCL2;HNRNPCL4 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2;Heterogeneous nuclear ribonucleoprotein C-like 4 yes no 0 0 0 0 By MS/MS By MS/MS 4.91 1.28 1 2 5 6 6 2 7 15 63.021 63.034 2;3 1.4128E-69 24655 20211116_3444_TMUAki_TMT10x_S_F5 310.49 254.96 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20190 545 18555 103925;103926;103927;103928;103929;103930;103931;103932;103933;103934;103935;103936;103937;103938;103939;103940;103941;103942;103943;103944;103945;103946 126002;126003;126004;126005;126006;126007;126008;126009;126010;126011;126012;126013;126014;126015;126016;126017;126018;126019;126020;126021;126022;126023 126013 22 VFIGNLNTLVVKK Unmodified 1443.8813 0.88133542 545 P07910-2;P07910-4;P07910;P07910-3;O60812;B7ZW38;B2RXH8;P0DMR1 HNRNPC;HNRNPCL1;HNRNPCL3;HNRNPCL2;HNRNPCL4 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2;Heterogeneous nuclear ribonucleoprotein C-like 4 yes no 0 0 0 1 By MS/MS By MS/MS 5.6 1.02 2 2 4 2 5 5 68.431 68.497 3;4 1.4773E-25 21945 20211116_3431_TMUAki_TMT10x_P_F4 228.8 187.26 96072000 166310000 2253900 174400000 142030000 167000000 109810000 146770000 131310000 131900000 140690000 89469000 155210000 10684000 177230000 135510000 170130000 113740000 149800000 132980000 129430000 135430000 15 15 13 15 15 15 15 15 15 15 15 37431000 62620000 1045200 67159000 73521000 110290000 52979000 57697000 52983000 53419000 57329000 34860000 58448000 4582900 68837000 70042000 108510000 54813000 61188000 54055000 52348000 55169000 6 6 6 6 6 6 6 6 6 6 6 58641000 103690000 1208700 107240000 68513000 56718000 56831000 89068000 78330000 78481000 83359000 54610000 96763000 6101400 108400000 65472000 61624000 58923000 88609000 78925000 77085000 80258000 9 9 7 9 9 9 9 9 9 9 9 17358000000 8554100000 8803500000 20191 545 18556 103947;103948;103949;103950;103951;103952;103953;103954;103955;103956 126024;126025;126026;126027;126028;126029;126030;126031;126032;126033;126034;126035;126036;126037;126038 126024 15 VFIMDNCEELIPEYLNFIR Oxidation (M) 2430.16 0.1599544 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 1 0 By MS/MS By MS/MS 3.83 1.5 4 4 5 3 2 8 10 81.155 81.146 2;3 4.9696E-50 27170 20211116_3431_TMUAki_TMT10x_P_F4 222.74 82.599 22659000 38721000 110910 33421000 25375000 43463000 29122000 29956000 31823000 32454000 31047000 21097000 36111000 1567700 34619000 24419000 43355000 29428000 31214000 32229000 31593000 29974000 15 15 8 15 15 15 15 15 15 15 15 15661000 26271000 106530 23366000 15525000 33030000 18207000 20097000 21678000 21893000 20217000 14582000 24503000 1122100 24187000 14952000 32762000 18435000 21140000 21850000 21308000 19548000 9 9 5 9 9 9 9 9 9 9 9 6998600 12451000 4384.1 10054000 9849600 10434000 10916000 9858900 10145000 10561000 10830000 6515900 11609000 445610 10432000 9467000 10593000 10993000 10074000 10379000 10285000 10426000 6 6 3 6 6 6 6 6 6 6 6 11797000000 6795200000 5002000000 20192 544 18557 103957;103958;103959;103960;103961;103962;103963;103964;103965;103966;103967;103968;103969;103970;103971;103972;103973;103974 126039;126040;126041;126042;126043;126044;126045;126046;126047;126048;126049;126050;126051;126052;126053;126054;126055;126056;126057 126045 489 19 VFIMDSCDELIPEYLNFIR Oxidation (M) 2389.1334 0.1334053 553 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 1 0 By MS/MS By MS/MS 4.13 1.7 1 4 4 4 4 4 2 11 12 81.393 81.387 2;3 2.2589E-70 26386 20211116_3444_TMUAki_TMT10x_S_F5 284.12 253.12 46238000 75544000 498650 70878000 52633000 81292000 59161000 52898000 47678000 60563000 63040000 43052000 70473000 3414400 72792000 50636000 81534000 59313000 55445000 49552000 58833000 60337000 26 26 6 26 26 26 26 26 26 26 26 25906000 40726000 378500 39002000 25596000 54335000 28022000 30608000 26555000 35531000 34928000 24123000 37995000 1976500 40139000 24617000 53874000 28252000 32465000 27377000 34499000 33434000 13 13 4 13 13 13 13 13 13 13 13 20332000 34818000 120150 31876000 27037000 26957000 31139000 22289000 21123000 25031000 28113000 18930000 32478000 1437900 32653000 26019000 27660000 31061000 22980000 22175000 24334000 26903000 13 13 2 13 13 13 13 13 13 13 13 32601000000 17468000000 15133000000 20193 553 18558 103975;103976;103977;103978;103979;103980;103981;103982;103983;103984;103985;103986;103987;103988;103989;103990;103991;103992;103993;103994;103995;103996;103997 126058;126059;126060;126061;126062;126063;126064;126065;126066;126067;126068;126069;126070;126071;126072;126073;126074;126075;126076;126077;126078;126079;126080;126081;126082;126083 126079 511 26 VFIMDSCDELIPEYLNFIR Unmodified 2373.1385 0.13849068 553 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 0 By MS/MS 4 0 2 2 82.338 82.346 2;3 3.8018E-63 27668 20211116_3431_TMUAki_TMT10x_P_F4 258.78 227.5 2542900 3824100 67839 4043800 2449200 3843400 3037200 1287400 1312700 1743500 2875300 2368000 3569100 243810 4106800 2365400 3870300 2996700 1451600 1466400 1684000 2725400 3 3 2 3 3 3 3 3 3 3 3 2542900 3824100 67839 4043800 2449200 3843400 3037200 1287400 1312700 1743500 2875300 2368000 3569100 243810 4106800 2365400 3870300 2996700 1451600 1466400 1684000 2725400 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 641230000 641230000 0 20194 553 18558 103998;103999 126084;126085;126086 126086 3 VFIPHGLIMDR Oxidation (M) 1312.6962 0.69617719 470 P00492 HPRT1 Hypoxanthine-guanine phosphoribosyltransferase yes yes 0 0 1 0 By MS/MS By MS/MS 4 3.29 2 1 2 2 3 53.282 53.192 3 0.00017767 17360 20211116_3439_TMUAki_TMT10x_S_F1 89.9 65.87 8255400 12569000 50274 13470000 12388000 14536000 9173900 11619000 11486000 10238000 11439000 7686400 11731000 712670 13694000 11796000 14677000 9545100 11919000 11583000 10056000 11036000 5 5 2 5 5 5 5 5 5 5 5 5667000 8295300 19182 8694500 9579500 12020000 6877400 7673200 7558800 6881400 7495600 5276100 7741900 469870 8891300 9113800 11942000 7138400 7997200 7657700 6753300 7232600 3 3 1 3 3 3 3 3 3 3 3 2588400 4273300 31092 4775400 2808800 2516700 2296500 3945400 3927600 3357100 3943400 2410300 3989300 242800 4802400 2681900 2735300 2406700 3921700 3924900 3302900 3803600 2 2 1 2 2 2 2 2 2 2 2 2665900000 1348600000 1317300000 20195 470 18559 104000;104001;104002;104003;104004 126087;126088;126089;126090;126091 126090 360 5 VFIPHGLIMDR Unmodified 1296.7013 0.70126256 470 P00492 HPRT1 Hypoxanthine-guanine phosphoribosyltransferase yes yes 0 0 0 0 By MS/MS By MS/MS 4 3.29 2 1 2 2 3 59.009 58.977 3 1.7838E-12 18042 20211116_3440_TMUAki_TMT10x_S_F2 143.28 120.8 2000000 3222700 1364.3 3298100 2173500 2164400 2236100 1913100 1618500 1806000 2390000 1862200 3007400 167420 3342300 2085500 2269300 2245800 1954600 1700900 1768200 2281700 3 3 1 3 3 3 3 3 3 3 3 728820 1097800 0 1133500 903460 1087300 977790 548650 370330 550000 814610 678590 1024500 61047 1153200 868030 1098400 969120 585050 419090 537100 772070 1 1 0 1 1 1 1 1 1 1 1 1271200 2124900 1364.3 2164500 1270000 1077200 1258300 1364500 1248100 1256000 1575400 1183600 1982900 106370 2189100 1217500 1170900 1276700 1369600 1281800 1231100 1509600 2 2 1 2 2 2 2 2 2 2 2 918740000 543880000 374860000 20196 470 18559 104005;104006;104007;104008;104009 126092;126093;126094;126095 126094 4 VFITDDFHDMMPK 2 Oxidation (M) 1626.7058 0.70581517 672 P14625 HSP90B1 Endoplasmin yes yes 0 0 2 0 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 53.172 53.309 3 4.4189E-05 14896 20211116_3444_TMUAki_TMT10x_S_F5 98.182 88.695 22516000 37324000 144160 39604000 30465000 36944000 24888000 39854000 41393000 35529000 34361000 20965000 34836000 2002500 40202000 29072000 37865000 26048000 40244000 41138000 34878000 33364000 6 6 3 6 6 6 6 6 6 6 6 8876700 14264000 21581 15238000 15443000 22111000 12875000 14372000 15273000 12948000 13367000 8264700 13314000 782310 15579000 14740000 21928000 13268000 14960000 15365000 12704000 12954000 2 2 1 2 2 2 2 2 2 2 2 13639000 23060000 122580 24367000 15022000 14832000 12013000 25482000 26119000 22581000 20994000 12700000 21522000 1220200 24623000 14333000 15938000 12780000 25284000 25773000 22173000 20411000 4 4 2 4 4 4 4 4 4 4 4 2445500000 673020000 1772500000 20197 672 18560 104010;104011;104012;104013;104014 126096;126097;126098;126099;126100;126101;126102 126101 745;746 7 VFITDDFHDMMPK Oxidation (M) 1610.7109 0.71090055 672 P14625 HSP90B1 Endoplasmin yes yes 0 0 1 0 By MS/MS By MS/MS 5 0.707 1 2 1 1 3 60.702 60.695 3 7.202E-05 19272 20211116_3442_TMUAki_TMT10x_S_F4 94.191 74.353 10921000 19081000 261840 19793000 13048000 10763000 10961000 11325000 9536400 10848000 14959000 10171000 17807000 1179300 20007000 12474000 11535000 11184000 11472000 9956400 10614000 14263000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10921000 19081000 261840 19793000 13048000 10763000 10961000 11325000 9536400 10848000 14959000 10171000 17807000 1179300 20007000 12474000 11535000 11184000 11472000 9956400 10614000 14263000 3 3 3 3 3 3 3 3 3 3 3 1024800000 0 1024800000 20198 672 18560 104015;104016;104017;104018 126103;126104;126105;126106 126104 745;746 4 VFITDDFHDMMPK Unmodified 1594.716 0.71598593 672 P14625 HSP90B1 Endoplasmin yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 71.694 71.621 3 0.00010522 22354 20211116_3434_TMUAki_TMT10x_P_F6 84.718 67.436 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20199 672 18560 104019;104020 126107;126108 126107 2 VFLDPNILSDDGTVALR Unmodified 1843.968 0.96797818 1070 P48147 PREP Prolyl endopeptidase yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 1.11 2 1 2 1 3 3 79.293 79.27 2;3 2.2058E-15 26798 20211116_3442_TMUAki_TMT10x_S_F4 154.07 111.32 4576200 8095900 23254 8474900 6813200 5345300 6397200 5119400 4668000 4692100 6218100 4261000 7555800 425860 8572200 6523400 5633400 6457200 5203700 4879500 4600200 5950400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4576200 8095900 23254 8474900 6813200 5345300 6397200 5119400 4668000 4692100 6218100 4261000 7555800 425860 8572200 6523400 5633400 6457200 5203700 4879500 4600200 5950400 2 2 1 2 2 2 2 2 2 2 2 1017600000 0 1017600000 20200 1070 18561 104021;104022;104023;104024;104025;104026 126109;126110;126111;126112;126113 126112 5 VFLENVIR Unmodified 988.57057 0.57056597 1366 P62805 HIST1H4A Histone H4 yes yes 0 0 0 0 By MS/MS By MS/MS 6.81 1.21 2 2 2 2 5 21 96 36 80 86 56.673 56.713 2 4.9408E-05 19784 20211116_3433_TMUAki_TMT10x_P_F5 197.84 152.44 2419700000 3923800000 6428300 3779600000 2726400000 4535500000 2848700000 3674600000 3366500000 3568900000 3103300000 2252400000 3660800000 133460000 3877300000 2612900000 4554500000 2899200000 3776400000 3392800000 3490000000 3001800000 129 129 44 129 129 129 129 129 129 129 129 1360700000 2139100000 5149400 2095200000 1813900000 3111900000 1656200000 1937100000 1972900000 1911200000 1844400000 1266600000 1995800000 79535000 2155800000 1732800000 3081100000 1698000000 2028000000 1988700000 1867600000 1783200000 61 61 23 61 61 61 61 61 61 61 61 1059100000 1784700000 1279000 1684300000 912500000 1423600000 1192500000 1737500000 1393600000 1657800000 1258900000 985870000 1664900000 53930000 1721500000 880120000 1473400000 1201200000 1748400000 1404100000 1622400000 1218500000 68 68 21 68 68 68 68 68 68 68 68 877270000000 442800000000 434480000000 20201 1366 18562 104027;104028;104029;104030;104031;104032;104033;104034;104035;104036;104037;104038;104039;104040;104041;104042;104043;104044;104045;104046;104047;104048;104049;104050;104051;104052;104053;104054;104055;104056;104057;104058;104059;104060;104061;104062;104063;104064;104065;104066;104067;104068;104069;104070;104071;104072;104073;104074;104075;104076;104077;104078;104079;104080;104081;104082;104083;104084;104085;104086;104087;104088;104089;104090;104091;104092;104093;104094;104095;104096;104097;104098;104099;104100;104101;104102;104103;104104;104105;104106;104107;104108;104109;104110;104111;104112;104113;104114;104115;104116;104117;104118;104119;104120;104121;104122;104123;104124;104125;104126;104127;104128;104129;104130;104131;104132;104133;104134;104135;104136;104137;104138;104139;104140;104141;104142;104143;104144;104145;104146;104147;104148;104149;104150;104151;104152;104153;104154;104155;104156;104157;104158;104159;104160;104161;104162;104163;104164;104165;104166;104167;104168;104169;104170;104171;104172;104173;104174;104175;104176;104177;104178;104179;104180;104181;104182;104183;104184;104185;104186;104187;104188;104189;104190;104191;104192 126114;126115;126116;126117;126118;126119;126120;126121;126122;126123;126124;126125;126126;126127;126128;126129;126130;126131;126132;126133;126134;126135;126136;126137;126138;126139;126140;126141;126142;126143;126144;126145;126146;126147;126148;126149;126150;126151;126152;126153;126154;126155;126156;126157;126158;126159;126160;126161;126162;126163;126164;126165;126166;126167;126168;126169;126170;126171;126172;126173;126174;126175;126176;126177;126178;126179;126180;126181;126182;126183;126184;126185;126186;126187;126188;126189;126190;126191;126192;126193;126194;126195;126196;126197;126198;126199;126200;126201;126202;126203;126204;126205;126206;126207;126208;126209;126210;126211;126212;126213;126214;126215;126216;126217;126218;126219;126220;126221;126222;126223;126224;126225;126226;126227;126228;126229;126230;126231;126232;126233;126234;126235;126236;126237;126238;126239;126240;126241;126242;126243;126244;126245;126246;126247;126248;126249;126250;126251;126252;126253;126254;126255;126256;126257;126258;126259;126260;126261;126262;126263 126118 150 VFLENVIRDAVTYTEHAK Unmodified 2104.0953 0.095303954 1366 P62805 HIST1H4A Histone H4 yes yes 0 0 0 1 By MS/MS By MS/MS 4.63 2.78 11 13 11 2 2 3 9 20 33 38 58.802 58.769 3;4;5 1.893E-58 26037 20211116_3440_TMUAki_TMT10x_S_F2 254.44 221.13 431860000 695770000 2935900 633540000 759500000 533730000 485750000 525450000 384720000 401550000 522550000 402090000 649000000 38168000 646730000 721310000 549690000 503900000 530950000 400700000 397280000 499820000 89 90 52 89 90 89 89 90 90 90 90 178980000 287620000 1187200 271930000 173930000 340740000 193770000 223300000 164840000 167180000 212610000 166650000 268320000 14132000 279550000 167320000 340240000 194620000 231290000 170660000 165590000 203620000 33 33 17 33 33 33 33 33 33 33 33 252880000 408150000 1748700 361610000 585570000 192990000 291980000 302150000 219880000 234360000 309940000 235440000 380680000 24035000 367180000 553990000 209450000 309280000 299660000 230040000 231680000 296200000 56 57 35 56 57 56 56 57 57 57 57 159200000000 56629000000 102570000000 20202 1366 18563 104193;104194;104195;104196;104197;104198;104199;104200;104201;104202;104203;104204;104205;104206;104207;104208;104209;104210;104211;104212;104213;104214;104215;104216;104217;104218;104219;104220;104221;104222;104223;104224;104225;104226;104227;104228;104229;104230;104231;104232;104233;104234;104235;104236;104237;104238;104239;104240;104241;104242;104243;104244;104245;104246;104247;104248;104249;104250;104251;104252;104253;104254;104255;104256;104257;104258;104259;104260;104261;104262;104263 126264;126265;126266;126267;126268;126269;126270;126271;126272;126273;126274;126275;126276;126277;126278;126279;126280;126281;126282;126283;126284;126285;126286;126287;126288;126289;126290;126291;126292;126293;126294;126295;126296;126297;126298;126299;126300;126301;126302;126303;126304;126305;126306;126307;126308;126309;126310;126311;126312;126313;126314;126315;126316;126317;126318;126319;126320;126321;126322;126323;126324;126325;126326;126327;126328;126329;126330;126331;126332;126333;126334;126335;126336;126337;126338;126339;126340;126341;126342;126343;126344;126345;126346;126347;126348;126349;126350;126351;126352;126353 126315 90 VFLHLADIYAK Unmodified 1288.718 0.71795849 1726 Q14690 PDCD11 Protein RRP5 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 2.4 0.49 3 2 2 3 70.09 69.733 3 1.3937E-11 24247 20211116_3430_TMUAki_TMT10x_P_F3 128.17 89.017 10912000 17273000 42113 16839000 11381000 17800000 12753000 10105000 10870000 11465000 12249000 10160000 16116000 875700 17224000 10945000 17901000 12806000 10703000 11190000 11141000 11773000 3 3 1 3 3 3 3 3 3 3 3 8609100 13273000 42113 13013000 9006300 15475000 10084000 7711900 8544600 9036600 9392300 8016100 12385000 736830 13331000 8663900 15439000 10124000 8272400 8790100 8771000 9034200 2 2 1 2 2 2 2 2 2 2 2 2303300 3999400 0 3826000 2375100 2324700 2669300 2393200 2325600 2428400 2856700 2144200 3731200 138870 3893000 2281300 2462400 2681500 2430900 2399800 2370300 2739300 1 1 0 1 1 1 1 1 1 1 1 874130000 426940000 447190000 20203 1726 18564 104264;104265;104266;104267;104268 126354;126355;126356;126357;126358;126359 126356 6 VFLLGEEVAQYDGAYK Unmodified 1800.8934 0.89341625 619 P11177;P11177-2;P11177-3 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4 1.15 3 1 1 1 2 4 78.946 78.908 3 7.4811E-07 27820 20211116_3430_TMUAki_TMT10x_P_F3 101.36 83.44 8024700 12603000 0 12682000 11303000 8991900 10910000 6480900 6359100 6613500 8767400 7470800 11760000 593000 12877000 10820000 9331500 10946000 6720000 6753900 6453700 8383100 3 3 0 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8024700 12603000 0 12682000 11303000 8991900 10910000 6480900 6359100 6613500 8767400 7470800 11760000 593000 12877000 10820000 9331500 10946000 6720000 6753900 6453700 8383100 3 3 0 3 3 3 3 3 3 3 3 2774100000 281770000 2492300000 20204 619 18565 104269;104270;104271;104272;104273;104274 126360;126361;126362;126363 126360 4 VFLSGMPELR Oxidation (M) 1163.6009 0.60087982 2717 Q9BXS5;Q9BXS5-2;Q9Y6Q5;Q9Y6Q5-2 AP1M1;AP1M2 AP-1 complex subunit mu-1;AP-1 complex subunit mu-2 yes no 0 0 1 0 By MS/MS 7 0 1 1 54.623 55.344 2 0.016756 17477 20211116_3435_TMUAki_TMT10x_P_F7 64.42 33.131 3233400 5700300 118230 5699700 5665400 8200500 4483500 5529500 5649100 5192100 5100000 3011500 5319000 412320 5852100 5409700 8139900 4645700 5746700 5676500 5084800 4936800 1 1 1 1 1 1 1 1 1 1 1 3233400 5700300 118230 5699700 5665400 8200500 4483500 5529500 5649100 5192100 5100000 3011500 5319000 412320 5852100 5409700 8139900 4645700 5746700 5676500 5084800 4936800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 391510000 391510000 0 20205 2717 18566 104275 126364 126364 2919 1 VFNDCRDIIQR Unmodified 1434.7038 0.70378176 1393 P63092;Q5JWF2;P63092-4;Q5JWF2-2;P63092-3;P63092-2;P38405;P38405-2;P38405-3 GNAS;GNAL Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(olf) subunit alpha yes no 0 0 0 1 By MS/MS By MS/MS 5.25 0.433 3 1 1 3 40.564 40.708 3 4.6153E-06 9933 20211116_3444_TMUAki_TMT10x_S_F5 105.65 82.181 558200 861760 5381 1079000 589470 466290 524040 786950 800300 747040 874890 519780 804930 51731 1076300 563890 520030 543530 782740 804730 731240 841660 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 558200 861760 5381 1079000 589470 466290 524040 786950 800300 747040 874890 519780 804930 51731 1076300 563890 520030 543530 782740 804730 731240 841660 1 1 1 1 1 1 1 1 1 1 1 459060000 0 459060000 20206 1393 18567 104276;104277;104278;104279 126365;126366;126367 126366 3 VFNELLVLLPDTAK Unmodified 1570.897 0.89704506 2106 Q86UK7;Q86UK7-2;Q86UK7-3 ZNF598 Zinc finger protein 598 yes no 0 0 0 0 By MS/MS By MS/MS 7.75 0.433 1 3 3 1 81.373 81.381 3 0.00016326 26954 20211116_3436_TMUAki_TMT10x_P_F8 79.022 61.696 799350 1322300 0 1328600 853040 642000 911400 490150 508670 628810 888670 744090 1233800 43468 1344700 817870 692970 908950 510170 548600 608420 845510 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 799350 1322300 0 1328600 853040 642000 911400 490150 508670 628810 888670 744090 1233800 43468 1344700 817870 692970 908950 510170 548600 608420 845510 1 1 0 1 1 1 1 1 1 1 1 198240000 57674000 140560000 20207 2106 18568 104280;104281;104282;104283 126368;126369;126370 126368 3 VFNLYPR Unmodified 907.49159 0.49158736 1852 Q16555;Q16555-2 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 55.733 55.473 2 0.0057785 18291 20211116_3430_TMUAki_TMT10x_P_F3 106.76 77.423 8023100 14934000 48959 13842000 14485000 16716000 9887900 16475000 14919000 12047000 13855000 7470600 13931000 791420 14241000 13775000 16846000 10426000 16630000 14920000 11948000 13398000 4 4 3 4 4 4 4 4 4 4 4 3980500 6992000 16222 6343800 9502400 12867000 6174000 7411600 7328500 5736300 6488400 3706300 6521900 412590 6615000 9028100 12583000 6472300 7760800 7375200 5671400 6285100 2 2 1 2 2 2 2 2 2 2 2 4042600 7941600 32736 7498400 4982300 3848800 3713900 9063100 7590400 6310500 7366700 3764300 7408700 378830 7626400 4747300 4263200 3953500 8869200 7544300 6276600 7113400 2 2 2 2 2 2 2 2 2 2 2 1310000000 808280000 501710000 20208 1852 18569 104284;104285;104286;104287 126371;126372;126373;126374 126372 4 VFNPYTEFK Unmodified 1143.5601 0.56006086 2421 Q96C19 EFHD2 EF-hand domain-containing protein D2 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 64.078 64.437 2 0.0001677 20036 20211116_3436_TMUAki_TMT10x_P_F8 100.25 77.226 7263600 13188000 0 13300000 8673700 6871800 7517300 8938900 7451900 7260100 9449600 6762700 12307000 559150 13464000 8283600 7443500 7683600 8933900 7654800 7159800 9053800 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7263600 13188000 0 13300000 8673700 6871800 7517300 8938900 7451900 7260100 9449600 6762700 12307000 559150 13464000 8283600 7443500 7683600 8933900 7654800 7159800 9053800 2 2 0 2 2 2 2 2 2 2 2 918260000 297760000 620500000 20209 2421 18570 104288;104289;104290;104291 126375;126376;126377 126375 3 VFNTTPDDLDLHVIYDVSHNIAK Unmodified 2625.3075 0.30748157 3285 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog yes yes 0 0 0 0 By MS/MS By MS/MS 6.38 1.32 1 1 2 2 2 5 3 77.577 77.586 4 1.5762E-36 27263 20211116_3446_TMUAki_TMT10x_S_F7 189.78 171.99 64229000 113260000 543910 102970000 79813000 122890000 85486000 78351000 72597000 80216000 83801000 59803000 105650000 5513800 106070000 76669000 122970000 86017000 81966000 74816000 78266000 80493000 11 11 8 11 11 11 11 11 11 11 11 42084000 71662000 332150 66515000 47045000 93749000 56003000 51015000 46244000 52383000 52767000 39182000 66849000 3331700 68627000 45319000 92865000 56036000 54066000 47704000 51104000 50701000 7 7 4 7 7 7 7 7 7 7 7 22145000 41602000 211760 36455000 32768000 29145000 29483000 27336000 26352000 27833000 31034000 20621000 38800000 2182100 37445000 31350000 30101000 29980000 27899000 27112000 27162000 29792000 4 4 4 4 4 4 4 4 4 4 4 14673000000 9048700000 5624500000 20210 3285 18571 104292;104293;104294;104295;104296;104297;104298;104299 126378;126379;126380;126381;126382;126383;126384;126385;126386;126387;126388 126386 11 VFNVFCLYGNVEK Unmodified 1587.7755 0.77554972 677 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 0 By MS/MS By MS/MS 2.82 1.02 4 6 33 1 1 28 17 82.705 82.665 2;3 3.9648E-65 27802 20211116_3430_TMUAki_TMT10x_P_F3 327.32 289.64 276330000 482290000 3230500 436160000 379570000 446510000 364500000 303540000 247560000 322020000 360300000 257310000 449860000 26498000 448370000 363710000 451020000 366900000 316380000 260960000 313740000 344080000 42 42 30 42 42 42 42 42 42 42 42 119050000 193090000 762830 181450000 127310000 251810000 135340000 126100000 105090000 135130000 145940000 110850000 180130000 10281000 186990000 122290000 249360000 135920000 134820000 109690000 131610000 139520000 25 25 18 25 25 25 25 25 25 25 25 157290000 289200000 2467600 254700000 252260000 194700000 229160000 177440000 142460000 186880000 214360000 146470000 269730000 16216000 261380000 241420000 201660000 230980000 181560000 151280000 182130000 204560000 17 17 12 17 17 17 17 17 17 17 17 61119000000 27830000000 33289000000 20211 677 18572 104300;104301;104302;104303;104304;104305;104306;104307;104308;104309;104310;104311;104312;104313;104314;104315;104316;104317;104318;104319;104320;104321;104322;104323;104324;104325;104326;104327;104328;104329;104330;104331;104332;104333;104334;104335;104336;104337;104338;104339;104340;104341;104342;104343;104344 126389;126390;126391;126392;126393;126394;126395;126396;126397;126398;126399;126400;126401;126402;126403;126404;126405;126406;126407;126408;126409;126410;126411;126412;126413;126414;126415;126416;126417;126418;126419;126420;126421;126422;126423;126424;126425;126426;126427;126428;126429;126430;126431;126432;126433;126434;126435;126436;126437;126438;126439;126440;126441 126396 53 VFNYNTLER Unmodified 1154.572 0.57202253 936 P35606;P35606-2 COPB2 Coatomer subunit beta' yes no 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 50.5 50.646 2 3.0441E-05 14101 20211116_3445_TMUAki_TMT10x_S_F6 107.56 81.487 8645200 14415000 133340 16224000 21311000 24153000 13753000 13064000 12241000 11297000 12917000 8050500 13457000 1018400 16542000 20252000 23867000 14299000 13789000 12544000 11106000 12440000 3 3 3 3 3 3 3 3 3 3 3 8645200 14415000 133340 16224000 21311000 24153000 13753000 13064000 12241000 11297000 12917000 8050500 13457000 1018400 16542000 20252000 23867000 14299000 13789000 12544000 11106000 12440000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 568630000 568630000 0 20212 936 18573 104345;104346;104347 126442;126443;126444;126445 126445 4 VFPGSTTEDYNLIVIER Unmodified 1951.9891 0.98910755 1615 Q13263;Q13263-2 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 0 By MS/MS By MS/MS 4.3 1.57 4 4 4 5 4 2 11 12 76.177 76.135 2;3 1.8093E-80 25447 20211116_3442_TMUAki_TMT10x_S_F4 322.79 296.85 52784000 88426000 633840 79404000 64188000 79284000 68300000 55535000 56424000 59763000 67373000 49148000 82477000 4644300 81640000 61657000 80243000 68697000 57789000 58310000 58193000 64653000 25 25 11 25 25 25 25 25 25 25 25 25306000 40661000 316590 37889000 25932000 45870000 30237000 24845000 25085000 27398000 30017000 23562000 37931000 2044500 38969000 24969000 45765000 30286000 26398000 25920000 26653000 28803000 12 12 5 12 12 12 12 12 12 12 12 27479000 47765000 317250 41514000 38256000 33414000 38063000 30690000 31340000 32364000 37356000 25587000 44547000 2599800 42672000 36688000 34478000 38411000 31391000 32390000 31540000 35850000 13 13 6 13 13 13 13 13 13 13 13 28266000000 14501000000 13765000000 20213 1615 18574 104348;104349;104350;104351;104352;104353;104354;104355;104356;104357;104358;104359;104360;104361;104362;104363;104364;104365;104366;104367;104368;104369;104370 126446;126447;126448;126449;126450;126451;126452;126453;126454;126455;126456;126457;126458;126459;126460;126461;126462;126463;126464;126465;126466;126467;126468;126469;126470;126471;126472;126473;126474 126466 29 VFPSHFTQQR Unmodified 1245.6255 0.62545508 2092 Q7Z6Z7;Q7Z6Z7-2;Q7Z6Z7-3 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 0 0 0 0 By MS/MS 2 0 1 1 34.638 34.731 3 0.04869 8060 20211116_3440_TMUAki_TMT10x_S_F2 50.13 35.895 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20214 2092 18575 104371 126475 126475 1 VFQEFLK Unmodified 909.496 0.49600404 3372 yes no 0 0 0 0 By MS/MS 7 0 1 1 64.449 65.092 2 0.0074784 21499 20211116_3435_TMUAki_TMT10x_P_F7 101.33 0 + 4387900 7035100 26427 7481000 6893300 9756300 5418600 5466300 5419400 5602400 5953900 4085800 6566200 423510 7634400 6574200 9702300 5573400 5778300 5532200 5466000 5726900 1 1 1 1 1 1 1 1 1 1 1 4387900 7035100 26427 7481000 6893300 9756300 5418600 5466300 5419400 5602400 5953900 4085800 6566200 423510 7634400 6574200 9702300 5573400 5778300 5532200 5466000 5726900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 240630000 240630000 0 20215 3372 18576 104372 126476 126476 1 VFQFLNAK Unmodified 965.53345 0.53345218 1448 P83731 RPL24 60S ribosomal protein L24 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.667 1 4 4 5 4 70.076 69.825 2;3 0.00018696 25294 20211116_3441_TMUAki_TMT10x_S_F3 139.28 66.795 75948000 131150000 238250 127510000 130590000 161110000 109010000 100100000 85334000 85891000 106790000 70711000 122360000 6606200 130840000 124650000 160690000 110970000 104430000 88610000 84471000 102350000 8 8 4 8 8 8 8 8 8 8 8 62357000 106480000 192550 104230000 116180000 150290000 98901000 78426000 66890000 68608000 85499000 58057000 99348000 5464400 107180000 110930000 148650000 100230000 83071000 70111000 67410000 81901000 5 5 3 5 5 5 5 5 5 5 5 13591000 24666000 45694 23282000 14415000 10822000 10112000 21677000 18444000 17283000 21293000 12654000 23011000 1141800 23663000 13713000 12038000 10740000 21360000 18500000 17061000 20452000 3 3 1 3 3 3 3 3 3 3 3 5898200000 4297900000 1600200000 20216 1448 18577 104373;104374;104375;104376;104377;104378;104379;104380;104381 126477;126478;126479;126480;126481;126482;126483;126484;126485;126486 126484 10 VFQGTDEQLNDLYHNHQR Unmodified 2213.025 0.024992557 2370 Q92878;Q92878-2;Q92878-3 RAD50 DNA repair protein RAD50 yes no 0 0 0 0 By matching By MS/MS 4 0.816 1 1 1 1 2 46.084 46.202 4 1.9272E-23 13223 20211116_3442_TMUAki_TMT10x_S_F4 162.14 143.47 1722700 3047300 23194 3710200 1721400 1697000 1456100 2842400 2728800 2593700 2912600 1604100 2845900 155460 3708100 1644700 1878700 1530200 2824700 2726900 2543400 2804000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1722700 3047300 23194 3710200 1721400 1697000 1456100 2842400 2728800 2593700 2912600 1604100 2845900 155460 3708100 1644700 1878700 1530200 2824700 2726900 2543400 2804000 2 2 1 2 2 2 2 2 2 2 2 449380000 73542000 375840000 20217 2370 18578 104382;104383;104384 126487;126488 126487 2 VFQNEVLGTLQR Unmodified 1402.7569 0.75686319 1599 Q13144 EIF2B5 Translation initiation factor eIF-2B subunit epsilon yes yes 0 0 0 0 By MS/MS By MS/MS 7.25 0.433 3 1 2 2 61.774 62.25 2 1.4708E-14 19126 20211116_3436_TMUAki_TMT10x_P_F8 147.19 88.205 3935300 7325100 0 6522100 4984900 5105400 4510600 7149200 6442900 6454000 6007600 3663600 6832100 272130 6689200 4763400 5334400 4659900 7144900 6454500 6332000 5808800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3935300 7325100 0 6522100 4984900 5105400 4510600 7149200 6442900 6454000 6007600 3663600 6832100 272130 6689200 4763400 5334400 4659900 7144900 6454500 6332000 5808800 1 1 0 1 1 1 1 1 1 1 1 313270000 0 313270000 20218 1599 18579 104385;104386;104387;104388 126489;126490;126491;126492 126490 4 VFQSLPHENKPLTLSNYQTNK Unmodified 2457.2652 0.26522283 483 P04080 CSTB Cystatin-B yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.707 2 4 2 4 4 54.409 54.191 4;5 1.315E-34 16023 20211116_3440_TMUAki_TMT10x_S_F2 179.95 160.05 90688000 160620000 481730 182930000 136160000 175110000 105010000 113090000 109420000 105910000 120660000 84441000 149960000 8290700 184930000 129780000 177480000 108290000 117890000 111520000 103730000 116050000 15 15 8 15 15 15 15 15 15 15 15 59693000 103850000 434770 117840000 110940000 150820000 87306000 76759000 72082000 69876000 76254000 55582000 96956000 5959800 119730000 105800000 149950000 89322000 81575000 74145000 68528000 73431000 9 9 5 9 9 9 9 9 9 9 9 30995000 56768000 46952 65085000 25221000 24283000 17708000 36328000 37340000 36033000 44403000 28858000 53002000 2330900 65200000 23984000 27526000 18963000 36319000 37379000 35204000 42615000 6 6 3 6 6 6 6 6 6 6 6 15401000000 9988600000 5412800000 20219 483 18580 104389;104390;104391;104392;104393;104394;104395;104396 126493;126494;126495;126496;126497;126498;126499;126500;126501;126502;126503;126504;126505;126506;126507 126506 15 VFQTEAELQEVISDLQSK Unmodified 2063.0423 0.04226533 2370 Q92878;Q92878-2;Q92878-3 RAD50 DNA repair protein RAD50 yes no 0 0 0 0 By MS/MS 1.5 0.5 1 1 2 81.649 81.648 3 8.2902E-05 26939 20211116_3428_TMUAki_TMT10x_P_F1 76.573 58.209 3747200 5623800 80728 5396100 3305700 6032700 3707200 3480800 3347900 3984900 4685800 3489600 5246800 379720 5530500 3184700 6049100 3728200 3683000 3469100 3871100 4478800 2 2 2 2 2 2 2 2 2 2 2 3747200 5623800 80728 5396100 3305700 6032700 3707200 3480800 3347900 3984900 4685800 3489600 5246800 379720 5530500 3184700 6049100 3728200 3683000 3469100 3871100 4478800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1605000000 1605000000 0 20220 2370 18581 104397;104398 126508 126508 1 VFSANSTAACTELAKR Unmodified 1724.8516 0.85156821 1714 Q14558;Q14558-2 PRPSAP1 Phosphoribosyl pyrophosphate synthase-associated protein 1 yes no 0 0 0 1 By MS/MS 8 0 1 1 44.408 44.378 3 1.8767E-10 11337 20211116_3447_TMUAki_TMT10x_S_F8 126.26 107.53 751900 1197800 14366 1386100 600130 598340 500580 1334000 1101600 947720 1229600 700200 1118300 73600 1389000 573800 674670 531570 1307600 1098900 941500 1182200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 751900 1197800 14366 1386100 600130 598340 500580 1334000 1101600 947720 1229600 700200 1118300 73600 1389000 573800 674670 531570 1307600 1098900 941500 1182200 1 1 1 1 1 1 1 1 1 1 1 72818000 0 72818000 20221 1714 18582 104399 126509 126509 1 VFSATLGLVDIVK Unmodified 1360.7966 0.79660274 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 3 1 2 79.78 79.762 2;3 2.6732E-22 26370 20211116_3440_TMUAki_TMT10x_S_F2 199.7 135.88 19718000 31235000 127690 32787000 22360000 23842000 25979000 15392000 15904000 16980000 22868000 18360000 29152000 1784800 33205000 21539000 24651000 25851000 16124000 16868000 16518000 21844000 3 3 2 3 3 3 3 3 3 3 3 4909100 7389200 66635 8751700 4308600 7593400 5675000 3952000 4227600 4306000 5271300 4571400 6900000 460690 8814700 4169700 7725300 5640100 4212500 4401200 4190900 5052700 1 1 1 1 1 1 1 1 1 1 1 14808000 23846000 61051 24035000 18052000 16249000 20304000 11440000 11677000 12674000 17596000 13789000 22252000 1324100 24390000 17369000 16925000 20211000 11911000 12467000 12327000 16791000 2 2 1 2 2 2 2 2 2 2 2 2940400000 1065100000 1875200000 20222 586 18583 104400;104401;104402 126510;126511;126512 126511 3 VFSDEVQQQAQLSTIR Unmodified 1847.9377 0.93774068 3224 Q9Y262;Q9Y262-2 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.806 1 4 4 1 5 5 58.704 58.753 2;3 7.8257E-93 18444 20211116_3442_TMUAki_TMT10x_S_F4 336.93 309.96 30992000 53707000 310310 54968000 42204000 61230000 38907000 39275000 35281000 36099000 42821000 28859000 50119000 2944000 56081000 40399000 61497000 39525000 40945000 36318000 35387000 41074000 10 10 8 10 10 10 10 10 10 10 10 23813000 41049000 198190 41485000 35392000 54820000 33020000 30738000 26886000 27658000 32803000 22173000 38304000 2249500 42490000 33884000 54484000 33428000 32375000 27830000 27139000 31460000 7 7 5 7 7 7 7 7 7 7 7 7179000 12658000 112120 13483000 6812000 6409700 5886900 8537500 8394900 8441200 10018000 6685200 11814000 694540 13591000 6515200 7013900 6097300 8570100 8488200 8248100 9613900 3 3 3 3 3 3 3 3 3 3 3 6275100000 3292300000 2982800000 20223 3224 18584 104403;104404;104405;104406;104407;104408;104409;104410;104411;104412 126513;126514;126515;126516;126517;126518;126519;126520;126521;126522;126523 126520 11 VFSDIGAIQSLKR Unmodified 1432.8038 0.80381338 2017 Q6SZW1;Q6SZW1-2 SARM1 Sterile alpha and TIR motif-containing protein 1 yes no 0 0 0 1 By MS/MS 3 0 1 1 64.746 64.294 3 4.3827E-06 22988 20211116_3441_TMUAki_TMT10x_S_F3 107.6 83.266 2999200 5077300 10257 5158200 3385000 3143700 2795200 4121000 3648600 4143600 4068500 2792600 4738000 263620 5226300 3231500 3348800 2892500 4141300 3689400 4045900 3911800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2999200 5077300 10257 5158200 3385000 3143700 2795200 4121000 3648600 4143600 4068500 2792600 4738000 263620 5226300 3231500 3348800 2892500 4141300 3689400 4045900 3911800 1 1 1 1 1 1 1 1 1 1 1 291140000 0 291140000 20224 2017 18585 104413 126524 126524 1 VFSGLVSTGLK Unmodified 1106.6336 0.63356015 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 2.65 1.03 3 4 6 4 10 7 67.772 67.563 2;3 1.3037E-15 23244 20211116_3430_TMUAki_TMT10x_P_F3 200.56 159.99 247380000 434890000 2986100 418350000 320110000 392750000 285540000 285770000 272840000 261140000 329350000 230350000 405740000 22845000 427570000 306160000 399290000 291050000 295220000 280130000 256060000 315970000 21 21 15 21 21 21 21 21 21 21 21 131950000 225030000 1342900 214990000 206140000 283920000 173280000 151300000 144070000 140560000 170960000 122860000 209940000 12604000 221060000 196870000 282010000 176580000 160210000 148800000 137720000 164090000 12 12 10 12 12 12 12 12 12 12 12 115430000 209860000 1643200 203360000 113970000 108830000 112260000 134470000 128770000 120580000 158390000 107480000 195800000 10241000 206500000 109280000 117270000 114470000 135010000 131330000 118340000 151880000 9 9 5 9 9 9 9 9 9 9 9 30065000000 16056000000 14009000000 20225 653 18586 104414;104415;104416;104417;104418;104419;104420;104421;104422;104423;104424;104425;104426;104427;104428;104429;104430 126525;126526;126527;126528;126529;126530;126531;126532;126533;126534;126535;126536;126537;126538;126539;126540;126541;126542;126543;126544;126545;126546;126547;126548;126549 126530 25 VFSIGPVFR Unmodified 1020.5757 0.57565135 678 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 3.71 1.03 1 2 2 2 4 3 69.507 69.363 2 2.7088E-06 22241 20211116_3431_TMUAki_TMT10x_P_F4 191.63 149.15 57893000 92183000 49119 92862000 69488000 89985000 69218000 70652000 62778000 69898000 74864000 53901000 86019000 4551100 94644000 66594000 91414000 70026000 72788000 64576000 68297000 71845000 8 8 2 8 8 8 8 8 8 8 8 34895000 55254000 49119 55831000 41092000 67773000 43803000 42039000 38293000 42404000 45494000 32490000 51560000 2837400 57094000 39460000 67727000 44119000 44052000 39454000 41399000 43664000 5 5 2 5 5 5 5 5 5 5 5 22998000 36929000 0 37031000 28396000 22212000 25415000 28613000 24484000 27494000 29370000 21411000 34459000 1713800 37549000 27135000 23686000 25906000 28735000 25123000 26898000 28181000 3 3 0 3 3 3 3 3 3 3 3 9302600000 4848500000 4454100000 20226 678 18587 104431;104432;104433;104434;104435;104436;104437 126550;126551;126552;126553;126554;126555;126556;126557 126552 8 VFSLSSEFK Unmodified 1042.5335 0.53351176 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 65.776 66.048 2 1.5005E-10 20603 20211116_3436_TMUAki_TMT10x_P_F8 220.51 175.43 17406000 30688000 221680 30036000 25973000 34967000 18946000 27122000 23202000 23434000 25913000 16209000 28633000 1769700 30761000 24741000 35141000 19716000 27861000 23514000 23039000 24914000 5 5 5 5 5 5 5 5 5 5 5 9780800 17021000 113620 16519000 16765000 27361000 11675000 15476000 11733000 12982000 14148000 9107700 15881000 1014600 17050000 15954000 26938000 12111000 16260000 12019000 12782000 13573000 3 3 3 3 3 3 3 3 3 3 3 7625400 13667000 108050 13516000 9208200 7605300 7270300 11646000 11469000 10452000 11765000 7100800 12752000 755070 13711000 8787100 8203200 7605900 11601000 11495000 10257000 11340000 2 2 2 2 2 2 2 2 2 2 2 2392600000 1405000000 987610000 20227 352 18588 104438;104439;104440;104441;104442 126558;126559;126560;126561;126562;126563 126560 6 VFSWGFGGYGR Unmodified 1231.5774 0.57744226 3056 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.71 1.03 1 2 2 2 3 4 73.862 73.807 2 9.468E-30 24630 20211116_3442_TMUAki_TMT10x_S_F4 264.95 241.4 78100000 125780000 1441200 132860000 100810000 97899000 103340000 54327000 45528000 62210000 91371000 72727000 117390000 7804600 134520000 96789000 100910000 102900000 57671000 50473000 60432000 86723000 12 12 10 12 12 12 12 12 12 12 12 37698000 58469000 635560 62176000 43839000 61071000 53341000 25211000 20807000 28748000 42081000 35102000 54572000 3472200 63151000 42291000 61478000 52602000 27548000 23346000 27931000 39935000 5 5 4 5 5 5 5 5 5 5 5 40403000 67307000 805650 70689000 56969000 36828000 50001000 29117000 24721000 33461000 49291000 37625000 62818000 4332400 71369000 54498000 39433000 50300000 30123000 27127000 32501000 46788000 7 7 6 7 7 7 7 7 7 7 7 5723200000 2726200000 2997000000 20228 3056 18589 104443;104444;104445;104446;104447;104448;104449 126564;126565;126566;126567;126568;126569;126570;126571;126572;126573;126574;126575 126571 12 VFTSWTGGGAAASR Unmodified 1366.663 0.6629628 43 CON__P15636 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 53.096 52.833 2 2.2683E-60 17205 20211116_3430_TMUAki_TMT10x_P_F3 303.36 267.92 + 7288900 12668000 60844 15980000 16658000 12291000 9318500 6387300 6886900 6402100 11723000 6786200 11833000 677270 16013000 15784000 12616000 9760600 6792600 7284300 6252000 11160000 3 3 1 3 3 3 3 3 3 3 3 2203700 4222700 0 5281600 12374000 9068400 5986700 2178500 2505900 2197900 4349600 2051100 3944200 218950 5369900 11697000 8849900 6298800 2563300 2767000 2145800 4138900 1 1 0 1 1 1 1 1 1 1 1 5085100 8445700 60844 10699000 4283900 3222400 3331800 4208800 4381100 4204200 7373900 4735100 7889200 458320 10643000 4086800 3766000 3461800 4229300 4517300 4106200 7020600 2 2 1 2 2 2 2 2 2 2 2 617950000 457920000 160030000 20229 43 18590 104450;104451;104452 126576;126577;126578;126579 126576 4 VFTTQELVQAFTHAPATLEADR Unmodified 2444.2336 0.23358835 431 O95433;O95433-2 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.3 1.49 2 1 2 2 3 6 4 78.892 78.896 3 9.2732E-56 27817 20211116_3446_TMUAki_TMT10x_S_F7 227.4 199.1 34494000 60788000 250060 53102000 35830000 51257000 42413000 26427000 24912000 28039000 38571000 32116000 56693000 2249800 54688000 34512000 51773000 42135000 28171000 26594000 27318000 36785000 8 8 3 8 8 8 8 8 8 8 8 21903000 37422000 35257 34076000 21783000 35761000 25753000 16329000 15785000 18781000 24527000 20392000 34907000 1053200 35024000 20968000 35891000 25606000 17657000 16805000 18242000 23390000 5 5 1 5 5 5 5 5 5 5 5 12591000 23366000 214800 19027000 14047000 15495000 16660000 10098000 9127000 9258000 14044000 11724000 21786000 1196600 19664000 13543000 15882000 16529000 10514000 9789300 9076500 13395000 3 3 2 3 3 3 3 3 3 3 3 21371000000 11359000000 10012000000 20230 431 18591 104453;104454;104455;104456;104457;104458;104459;104460;104461;104462 126580;126581;126582;126583;126584;126585;126586;126587;126588 126587 9 VFTTQELVQAFTHAPATLEADRGGK Unmodified 2686.3715 0.37147881 431 O95433;O95433-2 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 yes no 0 0 0 1 By MS/MS By MS/MS 4.86 3.09 2 1 2 2 3 4 77.407 77.407 4 7.6563E-73 25218 20211116_3428_TMUAki_TMT10x_P_F1 244.22 222 95707000 158340000 761380 136650000 109860000 146810000 109870000 100210000 91129000 101220000 111380000 89117000 147670000 6210500 141090000 105370000 147890000 110870000 104270000 94247000 98812000 106820000 12 12 6 12 12 12 12 12 12 12 12 61649000 100690000 741500 90463000 55916000 108650000 67755000 65622000 58431000 62127000 73697000 57407000 93913000 5212500 93281000 53952000 108590000 67819000 68787000 60394000 60821000 70620000 7 7 5 7 7 7 7 7 7 7 7 34057000 57652000 19871 46182000 53942000 38166000 42117000 34591000 32697000 39089000 37682000 31710000 53753000 998000 47804000 51418000 39295000 43047000 35485000 33853000 37991000 36196000 5 5 1 5 5 5 5 5 5 5 5 24523000000 11835000000 12687000000 20231 431 18592 104463;104464;104465;104466;104467;104468;104469 126589;126590;126591;126592;126593;126594;126595;126596;126597;126598;126599;126600 126589 12 VFTTVGSAEKR Unmodified 1193.6404 0.64043645 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 1 By MS/MS By MS/MS 5.33 3.09 2 2 2 4 2 36.906 37.136 3 1.7428E-14 8607 20211116_3436_TMUAki_TMT10x_P_F8 182.93 142.43 2143700 3699100 17600 3571500 2941000 2603400 2265600 2190600 1869400 1953800 2742700 1996100 3451100 199270 3638100 2803700 2702600 2321100 2241000 1950100 1918000 2618700 6 6 3 6 6 6 6 6 6 6 6 858070 1494400 3814.3 1350600 1740300 1636500 1066500 780720 681090 750150 1029500 798950 1393900 84379 1392300 1651800 1630300 1105100 836060 722120 733890 982310 3 3 1 3 3 3 3 3 3 3 3 1285700 2204600 13786 2220900 1200700 966880 1199000 1409900 1188300 1203700 1713200 1197100 2057200 114890 2245800 1151800 1072300 1216000 1404900 1228000 1184100 1636400 3 3 2 3 3 3 3 3 3 3 3 158450000 92920000 65531000 20232 1092 18593 104470;104471;104472;104473;104474;104475 126601;126602;126603;126604;126605;126606;126607 126604 7 VFVDLLPATQCTK Unmodified 1490.7803 0.78030075 1745 Q14CX7;Q14CX7-2 NAA25 N-alpha-acetyltransferase 25, NatB auxiliary subunit yes no 0 0 0 0 By MS/MS 1 0 1 1 75.363 75.286 3 0.094581 26305 20211116_3439_TMUAki_TMT10x_S_F1 35.054 19.788 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20233 1745 18594 104476 126608 126608 1 VFVGGLSPDTSEEQIK Unmodified 1704.857 0.85703074 151;152 O14979;O14979-3;O14979-2 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like no no 0 0 0 0 By MS/MS By MS/MS 4.35 1.23 1 4 4 4 4 9 8 64.113 64.023 2;3 1.388E-107 20347 20211116_3433_TMUAki_TMT10x_P_F5 362.64 329.8 124830000 212830000 952570 229330000 142010000 167070000 124270000 114470000 127230000 121010000 150690000 116230000 198660000 11008000 231860000 135750000 172860000 127070000 119230000 130140000 117920000 144640000 25 25 15 25 25 25 25 25 25 25 25 63859000 106320000 487740 112820000 91298000 124620000 81226000 61915000 65536000 63751000 76990000 59461000 99236000 5932700 114810000 87304000 124820000 82432000 66170000 67764000 62187000 73915000 14 14 9 14 14 14 14 14 14 14 14 60973000 106510000 464830 116510000 50711000 42444000 43040000 52551000 61696000 57263000 73705000 56773000 99421000 5075200 117050000 48441000 48035000 44636000 53061000 62375000 55732000 70728000 11 11 6 11 11 11 11 11 11 11 11 27953000000 15509000000 12443000000 20234 151;152 18595 104477;104478;104479;104480;104481;104482;104483;104484;104485;104486;104487;104488;104489;104490;104491;104492;104493 126609;126610;126611;126612;126613;126614;126615;126616;126617;126618;126619;126620;126621;126622;126623;126624;126625;126626;126627;126628;126629;126630;126631;126632;126633 126619 25 VFVGYNSTGAELR Unmodified 1411.7096 0.70957864 759 P21579 SYT1 Synaptotagmin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 52.958 53.283 2 1.9739E-22 14789 20211116_3434_TMUAki_TMT10x_P_F6 204.69 170.3 8805400 15263000 126320 16264000 19188000 19935000 12565000 12386000 13442000 11058000 13182000 8199500 14245000 981250 16576000 18238000 19912000 13118000 12935000 13627000 10854000 12724000 4 4 3 4 4 4 4 4 4 4 4 7097900 12191000 122420 13123000 17280000 18424000 11024000 9673100 10897000 8630400 10605000 6609600 11379000 833260 13401000 16418000 18245000 11506000 10245000 11081000 8471800 10240000 3 3 2 3 3 3 3 3 3 3 3 1707500 3072000 3896.1 3141300 1907500 1511000 1540300 2713300 2544300 2427400 2576300 1589900 2866800 147990 3175400 1820000 1666900 1612700 2689400 2545600 2382500 2484200 1 1 1 1 1 1 1 1 1 1 1 1871100000 977070000 893990000 20235 759 18596 104494;104495;104496;104497;104498 126634;126635;126636;126637 126634 4 VFVLDEADVMIATQGHQDQSIR Oxidation (M) 2487.2064 0.20638732 2959 Q9NUU7;Q9UMR2;Q9UMR2-2;Q9UMR2-4;Q9NUU7-2;Q9UMR2-3 DDX19A;DDX19B ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B yes no 0 0 1 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 2 3 65.882 65.575 3 1.3885E-17 21265 20211116_3442_TMUAki_TMT10x_S_F4 135.81 126.25 3010900 5164100 0 4694800 3096100 5736700 3448400 3074600 3266800 3380600 3723900 2803100 4816900 215270 4838200 2975200 5720100 3473800 3269600 3347500 3289000 3578200 2 2 0 2 2 2 2 2 2 2 2 3010900 5164100 0 4694800 3096100 5736700 3448400 3074600 3266800 3380600 3723900 2803100 4816900 215270 4838200 2975200 5720100 3473800 3269600 3347500 3289000 3578200 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1874500000 1006500000 867980000 20236 2959 18597 104499;104500;104501;104502;104503 126638;126639;126640 126640 3048 3 VFVLDEADVMIATQGHQDQSIR Unmodified 2471.2115 0.2114727 2959 Q9NUU7;Q9UMR2;Q9UMR2-2;Q9UMR2-4;Q9NUU7-2;Q9UMR2-3 DDX19A;DDX19B ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B yes no 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 75.069 74.941 3 2.5491E-07 27306 20211116_3441_TMUAki_TMT10x_S_F3 84.762 53.465 5734300 11128000 114590 9830000 8952800 7091300 8059400 7045600 5929600 6889300 8077700 5340000 10379000 616930 10079000 8568200 7392100 8155800 7161100 6201800 6734800 7725700 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5734300 11128000 114590 9830000 8952800 7091300 8059400 7045600 5929600 6889300 8077700 5340000 10379000 616930 10079000 8568200 7392100 8155800 7161100 6201800 6734800 7725700 3 3 2 3 3 3 3 3 3 3 3 853690000 0 853690000 20237 2959 18597 104504;104505 126641;126642;126643 126643 3 VFVLPCIQQIQR Unmodified 1499.8283 0.82825399 373 O75955;O75955-2 FLOT1 Flotillin-1 yes no 0 0 0 0 By MS/MS 5 0 1 1 74.255 74.265 3 2.6893E-05 23472 20211116_3444_TMUAki_TMT10x_S_F5 89.827 67.352 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20238 373 18598 104506 126644 126644 1 VFYELQHSDKPVGTK Unmodified 1746.8941 0.89408495 2387 Q93009;Q93009-3 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes no 0 0 0 1 By MS/MS By matching 7 0 2 1 1 47.311 47.85 4 6.6955E-24 14426 20211116_3435_TMUAki_TMT10x_P_F7 190.19 170.43 2095800 3524300 15410 3989300 7193900 6602100 3499400 3893000 4229000 3286100 3474800 1951500 3290300 259520 4076000 6805900 6503700 3765400 4076700 4243600 3234400 3375400 1 1 1 1 1 1 1 1 1 1 1 2095800 3524300 15410 3989300 7193900 6602100 3499400 3893000 4229000 3286100 3474800 1951500 3290300 259520 4076000 6805900 6503700 3765400 4076700 4243600 3234400 3375400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517740000 337870000 179870000 20239 2387 18599 104507;104508 126645 126645 1 VFYVASFPVALPLQPPTLR Unmodified 2114.1928 0.19283315 2527 Q96NU1;Q96NU1-1;Q96NU1-2;Q96NU1-6;Q96NU1-4;Q96NU1-5 SAMD11 Sterile alpha motif domain-containing protein 11 yes no 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 2 3 81.459 81.47 3 1.2339E-17 26354 20211116_3447_TMUAki_TMT10x_S_F8 145.62 132.99 4724700 8549500 21233 8655900 6749600 7403300 7457200 4543900 6520600 5556400 5985600 4398500 7978000 190440 8804200 6484000 7555000 7498200 4794600 6655600 5385000 5790700 6 6 1 6 6 6 6 6 6 6 6 1554200 2783400 0 2721400 1859000 3115500 2083300 1591800 1814300 1822900 1593300 1446600 2597000 65895 2786600 1783800 3115300 2093100 1702300 1849700 1770800 1543800 2 2 0 2 2 2 2 2 2 2 2 3170500 5766100 21233 5934500 4890600 4287800 5373900 2952100 4706300 3733500 4392300 2951900 5381000 124550 6017700 4700200 4439700 5405000 3092300 4805900 3614200 4246800 4 4 1 4 4 4 4 4 4 4 4 2038300000 1015400000 1022900000 20240 2527 18600 104509;104510;104511;104512;104513 126646;126647;126648;126649;126650;126651 126650 6 VGAAEIISR Unmodified 914.51853 0.5185304 345 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.29 1.03 2 2 2 1 3 4 39.948 39.996 2 0.0014741 10657 20211116_3442_TMUAki_TMT10x_S_F4 97.635 32.981 28800000 46987000 10301 40925000 36262000 40004000 31222000 21665000 24465000 23090000 31656000 26811000 43821000 1884700 42164000 34603000 40398000 31724000 22996000 25440000 22492000 30315000 6 6 2 6 6 6 6 6 6 6 6 23034000 37168000 565.63 31813000 29736000 35156000 24243000 16562000 18945000 17853000 24539000 21443000 34661000 1470500 32882000 28339000 35191000 24714000 17816000 19703000 17383000 23499000 3 3 1 3 3 3 3 3 3 3 3 5766200 9819700 9735.8 9111900 6525800 4847200 6979500 5103200 5520100 5236900 7117000 5368300 9160200 414260 9281900 6263800 5206900 7010700 5179700 5736300 5109100 6816100 3 3 1 3 3 3 3 3 3 3 3 1198500000 534250000 664260000 20241 345 18601 104514;104515;104516;104517;104518;104519;104520 126652;126653;126654;126655;126656;126657;126658 126657 7 VGAEDADGIDMAYR Oxidation (M) 1497.6406 0.64057238 1104 P49588;P49588-2 AARS Alanine--tRNA ligase, cytoplasmic yes no 0 0 1 0 By MS/MS By MS/MS 1.67 0.667 4 4 1 5 4 42.76 42.648 2;3 2.7776E-13 11204 20211116_3440_TMUAki_TMT10x_S_F2 141.89 110.02 6032700 9665600 89576 11545000 13912000 12649000 8271100 10717000 11476000 8094800 10805000 5617400 9026100 656140 11661000 13201000 12775000 8783900 10915000 11511000 8013800 10444000 8 8 4 8 8 8 8 8 8 8 8 4440900 6815900 72804 7958100 12402000 11374000 6953500 7500500 7430800 5790000 7561300 4135300 6364200 533560 8089000 11758000 11289000 7352900 7770300 7543400 5725300 7290000 4 4 3 4 4 4 4 4 4 4 4 1591800 2849700 16772 3586700 1510300 1275600 1317600 3216100 4045300 2304900 3243900 1482100 2661800 122580 3572400 1442800 1485700 1431000 3144700 3967600 2288600 3154100 4 4 1 4 4 4 4 4 4 4 4 720170000 556440000 163730000 20242 1104 18602 104521;104522;104523;104524;104525;104526;104527;104528;104529 126659;126660;126661;126662;126663;126664;126665;126666;126667 126666 1470 9 VGAGAGAAPFREVDEISPEDDQR Unmodified 2385.1197 0.1196808 2562 Q96T37;Q96T37-4;Q96T37-2;Q96T37-3 RBM15 Putative RNA-binding protein 15 yes no 0 0 0 1 By MS/MS By MS/MS 2.25 0.829 1 1 2 1 3 50.936 50.762 3 6.102E-11 14667 20211116_3440_TMUAki_TMT10x_S_F2 106.35 96.949 3390900 6134400 13829 6286700 4783500 6323500 3842200 5462700 5735500 4880300 5137900 3157200 5724600 287350 6403300 4562100 6420400 4005100 5580100 5730800 4790400 4974900 2 2 1 2 2 2 2 2 2 2 2 1924200 3452600 13829 3498800 3347500 5077100 2634000 3141600 3338200 2720900 2811700 1791800 3221800 192350 3589700 3192600 5031400 2730900 3279300 3346500 2674700 2728700 1 1 1 1 1 1 1 1 1 1 1 1466700 2681800 0 2788000 1436100 1246400 1208200 2321100 2397300 2159400 2326200 1365400 2502800 94992 2813600 1369500 1389000 1274200 2300800 2384300 2115700 2246200 1 1 0 1 1 1 1 1 1 1 1 387250000 166880000 220370000 20243 2562 18603 104530;104531;104532;104533 126668;126669;126670 126669 3 VGASASDGSVCVLDLRK Unmodified 1732.8778 0.87778296 2741 Q9BZK7;O60907;O60907-2 TBL1XR1;TBL1X F-box-like/WD repeat-containing protein TBL1XR1;F-box-like/WD repeat-containing protein TBL1X yes no 0 0 0 1 By MS/MS 7 0 1 1 51.348 52.021 3 4.8842E-15 16121 20211116_3435_TMUAki_TMT10x_P_F7 126.63 106.79 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20244 2741 18604 104534 126671 126671 1 VGDAIPAVEVFEGEPGNK Unmodified 1826.905 0.90504357 860 P30044;P30044-2;P30044-3 PRDX5 Peroxiredoxin-5, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 3.09 1.24 1 3 3 2 2 6 5 74.023 73.92 2;3 1.5412E-63 26913 20211116_3441_TMUAki_TMT10x_S_F3 272.92 255.89 53199000 84824000 880430 94585000 52511000 76874000 56750000 47922000 47693000 51031000 62183000 49539000 79186000 4974800 95538000 50494000 78756000 57062000 50278000 49430000 49712000 59537000 19 19 11 19 19 19 19 19 19 19 19 36135000 56984000 775930 64503000 34564000 60528000 38437000 33036000 32549000 34584000 42177000 33650000 53200000 3492200 65213000 33273000 61289000 38604000 35022000 33712000 33713000 40389000 12 12 7 12 12 12 12 12 12 12 12 17064000 27840000 104500 30082000 17946000 16346000 18312000 14886000 15145000 16447000 20006000 15889000 25986000 1482600 30325000 17221000 17467000 18458000 15256000 15718000 15999000 19149000 7 7 4 7 7 7 7 7 7 7 7 7045300000 3717800000 3327600000 20245 860 18605 104535;104536;104537;104538;104539;104540;104541;104542;104543;104544;104545 126672;126673;126674;126675;126676;126677;126678;126679;126680;126681;126682;126683;126684;126685;126686;126687;126688;126689;126690 126687 19 VGDAIPAVEVFEGEPGNKVNLAELFK Unmodified 2741.4276 0.42759671 860 P30044;P30044-2;P30044-3 PRDX5 Peroxiredoxin-5, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 6.17 1.07 1 2 3 4 2 79.83 79.845 3;4 2.7201E-17 28202 20211116_3446_TMUAki_TMT10x_S_F7 128.97 116.78 20528000 35316000 116720 22906000 26046000 45748000 31329000 32960000 31229000 33551000 32064000 19112000 32907000 1630300 24586000 25098000 44909000 31499000 34174000 31804000 32743000 30905000 7 7 2 7 7 7 7 7 7 7 7 15391000 25832000 35703 16701000 16527000 36310000 22371000 24159000 22767000 24858000 23472000 14330000 24070000 1131900 17976000 15984000 35507000 22399000 25197000 23169000 24249000 22621000 5 5 1 5 5 5 5 5 5 5 5 5136200 9483700 81016 6204900 9518900 9438700 8957900 8800900 8462600 8692800 8591400 4782400 8837000 498390 6610000 9113800 9401700 9100400 8977100 8635500 8494300 8283800 2 2 1 2 2 2 2 2 2 2 2 6437500000 3744800000 2692800000 20246 860 18606 104546;104547;104548;104549;104550;104551 126691;126692;126693;126694;126695;126696;126697 126696 7 VGDDVEFEVSSDR Unmodified 1452.6369 0.63686721 346 O75534;O75534-2;O75534-3;O75534-4 CSDE1 Cold shock domain-containing protein E1 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 49.895 49.764 2 3.1344E-11 13981 20211116_3428_TMUAki_TMT10x_P_F1 143 122.69 3139200 5296700 0 5657800 3932000 4500800 3239000 3852600 3707200 3307000 3925400 2922800 4943700 260640 5729000 3752100 4641900 3336200 3933400 3758700 3252300 3779900 2 2 0 2 2 2 2 2 2 2 2 1703700 2705400 0 2914200 2548600 3315200 2031500 2114000 2129600 1824600 2116500 1586300 2525200 149470 2964200 2430500 3325600 2090700 2201300 2161700 1793900 2042100 1 1 0 1 1 1 1 1 1 1 1 1435500 2591300 0 2743500 1383400 1185600 1207500 1738600 1577600 1482500 1808900 1336500 2418500 111170 2764800 1321600 1316300 1245400 1732100 1596900 1458400 1737800 1 1 0 1 1 1 1 1 1 1 1 266990000 149320000 117670000 20247 346 18607 104552;104553 126698;126699 126698 2 VGDDVEFEVSSDRR Unmodified 1608.738 0.73797824 346 O75534;O75534-2;O75534-3;O75534-4 CSDE1 Cold shock domain-containing protein E1 yes no 0 0 0 1 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 41.096 40.99 3 4.8439E-51 10630 20211116_3440_TMUAki_TMT10x_S_F2 282.12 245.55 13916000 22206000 134440 23754000 16938000 16862000 13006000 12821000 13125000 11903000 16839000 12958000 20726000 1278800 24021000 16147000 17512000 13402000 13212000 13479000 11663000 16129000 13 13 7 13 13 13 13 13 13 13 13 6192900 9462200 39430 10501000 10261000 10500000 6472400 5753200 5824000 5200600 7350500 5766400 8833100 597380 10639000 9745300 10590000 6743300 6072500 6007400 5101900 7043500 7 7 3 7 7 7 7 7 7 7 7 7722900 12744000 95010 13253000 6676800 6361300 6533600 7067900 7301300 6702700 9488800 7191200 11893000 681450 13382000 6402100 6921500 6658500 7139500 7471800 6561200 9085700 6 6 4 6 6 6 6 6 6 6 6 2632100000 1733500000 898550000 20248 346 18608 104554;104555;104556;104557;104558;104559 126700;126701;126702;126703;126704;126705;126706;126707;126708;126709;126710;126711;126712 126711 13 VGDFGDAINWPTPGEIAHK Unmodified 2022.9799 0.97993984 2013 Q6PKG0;Q6PKG0-3 LARP1 La-related protein 1 yes no 0 0 0 0 By MS/MS 7 0 1 1 72.729 72.901 3 0.062733 25288 20211116_3446_TMUAki_TMT10x_S_F7 36.679 20.373 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20249 2013 18609 104560 126713 126713 1 VGDGDLSAEEIPENEVSLRR Unmodified 2184.0659 0.065854319 1724 Q14684;Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 0 1 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 51.169 50.976 3 7.0483E-42 14434 20211116_3428_TMUAki_TMT10x_P_F1 214.24 189.64 6379700 11266000 83271 12305000 10047000 14020000 8610000 12251000 10840000 9349100 10399000 5940400 10516000 618190 12505000 9600300 14137000 8877700 12459000 10915000 9250300 10045000 7 7 3 7 7 7 7 7 7 7 7 4069000 7215300 60836 7693800 7958000 12096000 6851700 8070900 7297600 6315800 6879100 3788800 6734500 416020 7880900 7604300 11960000 7021600 8356500 7389700 6240600 6649000 4 4 2 4 4 4 4 4 4 4 4 2310700 4050500 22435 4610900 2089400 1923800 1758300 4180300 3542400 3033300 3519500 2151600 3781700 202170 4624100 1996000 2176300 1856000 4102000 3524900 3009700 3395900 3 3 1 3 3 3 3 3 3 3 3 1351000000 814560000 536400000 20250 1724 18610 104561;104562;104563;104564;104565 126714;126715;126716;126717;126718;126719;126720;126721 126714 8 VGDNDFLEVR Unmodified 1162.5619 0.56185177 67 O00178 GTPBP1 GTP-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 53.949 53.671 2 0.0087923 18647 20211116_3441_TMUAki_TMT10x_S_F3 69.672 48.801 5494300 8028700 1104.9 8010300 6598400 7937100 5430700 7732400 7963400 7292600 7607600 5115800 7491600 471000 8172000 6297500 8085700 5648100 7858900 7978000 7140500 7349700 2 2 1 2 2 2 2 2 2 2 2 2998500 3845700 1104.9 3625800 3824000 5481200 3179500 3922500 3846000 3486800 4042000 2791900 3587700 261190 3742200 3650500 5434500 3279400 4053800 3890400 3423400 3893100 1 1 1 1 1 1 1 1 1 1 1 2495800 4183000 0 4384500 2774400 2455900 2251300 3809800 4117400 3805800 3565500 2323800 3903900 209810 4429900 2647000 2651300 2368700 3805100 4087500 3717100 3456600 1 1 0 1 1 1 1 1 1 1 1 205830000 131360000 74465000 20251 67 18611 104566;104567 126722;126723 126723 2 VGDPQELNGITR Unmodified 1297.6626 0.66262845 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 2 3 43.619 43.628 2 6.2679E-24 13234 20211116_3430_TMUAki_TMT10x_P_F3 243.91 189.19 3552600 5274400 0 7105500 6731100 5274000 3357000 4715000 5959300 3605900 5267600 3307600 4928400 312330 7092100 6367600 5473200 3662200 4788900 5924200 3567400 5102900 4 4 0 4 4 4 4 4 4 4 4 1810900 2409100 0 3297400 5544700 4119600 2145100 2196800 2848600 1679200 2513600 1686000 2251300 184530 3313500 5229900 4102900 2375400 2315100 2855300 1661300 2435100 2 2 0 2 2 2 2 2 2 2 2 1741600 2865200 0 3808100 1186500 1154400 1211900 2518200 3110700 1926800 2754000 1621600 2677100 127810 3778600 1137700 1370300 1286800 2473800 3068900 1906100 2667800 2 2 0 2 2 2 2 2 2 2 2 492490000 327490000 165000000 20252 1092 18612 104568;104569;104570;104571;104572 126724;126725;126726;126727 126724 4 VGDVYIPR Unmodified 917.49707 0.49706667 1479;2639 Q9BRL6;Q9BRL6-2;Q01130;Q01130-2 SRSF8;SRSF2 Serine/arginine-rich splicing factor 8;Serine/arginine-rich splicing factor 2 no no 0 0 0 0 By MS/MS By MS/MS 3.22 1.31 1 2 2 2 2 5 4 45.98 45.975 2 0.003345 13039 20211116_3433_TMUAki_TMT10x_P_F5 101.28 25.25 48296000 71202000 17630 86942000 84046000 70927000 54792000 59096000 65372000 54053000 67526000 44963000 66498000 3863700 87344000 79810000 72978000 57435000 60530000 66119000 52999000 65073000 7 7 2 7 7 7 7 7 7 7 7 22828000 34008000 0 39617000 58613000 50269000 30396000 26120000 28398000 23680000 30838000 21253000 31754000 2089700 40179000 55472000 50011000 32245000 27702000 29064000 23228000 29672000 3 3 0 3 3 3 3 3 3 3 3 25468000 37194000 17630 47324000 25432000 20658000 24396000 32976000 36975000 30373000 36688000 23710000 34744000 1774000 47164000 24338000 22967000 25189000 32828000 37055000 29771000 35401000 4 4 2 4 4 4 4 4 4 4 4 6572700000 3911400000 2661200000 20253 2639;1479 18613 104573;104574;104575;104576;104577;104578;104579;104580;104581 126728;126729;126730;126731;126732;126733;126734 126730 7 VGDYVYFENSSSNPYLIR Unmodified 2122.0007 0.0007348666 1621 Q13330;Q13330-3;Q9BTC8;Q9BTC8-2;Q13330-2 MTA1;MTA3 Metastasis-associated protein MTA1;Metastasis-associated protein MTA3 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 73.516 73.464 3 1.9905E-12 23100 20211116_3434_TMUAki_TMT10x_P_F6 134.76 124.1 1895700 2889800 56801 2843000 1920900 3605000 2276300 2568900 1933100 2280100 2471100 1765500 2696300 210460 2915000 1854200 3602200 2279700 2655600 2000700 2238800 2367200 1 1 1 1 1 1 1 1 1 1 1 1895700 2889800 56801 2843000 1920900 3605000 2276300 2568900 1933100 2280100 2471100 1765500 2696300 210460 2915000 1854200 3602200 2279700 2655600 2000700 2238800 2367200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 438950000 438950000 0 20254 1621 18614 104582;104583 126735;126736 126735 2 VGDYVYFENSSSNPYLVR Unmodified 2107.9851 0.9850848 384 O94776 MTA2 Metastasis-associated protein MTA2 yes yes 0 0 0 0 By MS/MS By MS/MS 6.11 0.737 2 4 3 4 5 70.44 70.486 2;3 2.7653E-90 21851 20211116_3434_TMUAki_TMT10x_P_F6 328.08 293.7 23880000 40891000 242520 36555000 27733000 36181000 27753000 29123000 27855000 28980000 31638000 22236000 38139000 1988200 37593000 26596000 36723000 28154000 29962000 28468000 28310000 30403000 12 12 6 12 12 12 12 12 12 12 12 9018600 14755000 6998 13808000 9068500 17406000 10473000 9679600 8769700 9863000 11411000 8396500 13765000 552060 14207000 8724800 17336000 10497000 10237000 9090000 9625200 10926000 5 5 1 5 5 5 5 5 5 5 5 14862000 26136000 235530 22748000 18664000 18775000 17280000 19443000 19085000 19117000 20227000 13839000 24375000 1436100 23386000 17871000 19387000 17656000 19725000 19378000 18684000 19477000 7 7 5 7 7 7 7 7 7 7 7 6063000000 2193100000 3870000000 20255 384 18615 104584;104585;104586;104587;104588;104589;104590;104591;104592 126737;126738;126739;126740;126741;126742;126743;126744;126745;126746;126747;126748;126749 126738 13 VGEATETALTCLVEK Unmodified 1619.8076 0.80763771 697 P16615;P16615-5;P16615-2;P16615-3;P16615-4;Q93084;Q93084-2;Q93084-4;Q93084-3;Q93084-7;Q93084-6;Q93084-5 ATP2A2;ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 0 0 0 0 By MS/MS By MS/MS 4.33 1.33 1 5 4 4 3 1 10 8 74.138 74.089 2;3 1.4463E-43 24721 20211116_3442_TMUAki_TMT10x_S_F4 267.43 211.07 95129000 161050000 1390500 155780000 113170000 142400000 111440000 97469000 87233000 97815000 121910000 88583000 150260000 9217800 159100000 108530000 144880000 112380000 101380000 91034000 95517000 116530000 22 22 15 22 22 22 22 22 22 22 22 48402000 78731000 522970 76737000 54592000 92611000 59352000 48197000 44913000 49792000 59918000 45070000 73457000 4465500 78663000 52489000 92369000 59508000 51293000 46855000 48564000 57336000 12 12 7 12 12 12 12 12 12 12 12 46727000 82318000 867540 79047000 58573000 49785000 52091000 49271000 42320000 48022000 61992000 43513000 76799000 4752300 80435000 56046000 52511000 52875000 50084000 44179000 46953000 59192000 10 10 8 10 10 10 10 10 10 10 10 11784000000 6610400000 5173300000 20256 697 18616 104593;104594;104595;104596;104597;104598;104599;104600;104601;104602;104603;104604;104605;104606;104607;104608;104609;104610 126750;126751;126752;126753;126754;126755;126756;126757;126758;126759;126760;126761;126762;126763;126764;126765;126766;126767;126768;126769;126770;126771;126772;126773 126768 24 VGEFCHNR Unmodified 1017.445 0.44504788 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.25 0.829 1 1 2 3 1 28.58 28.475 2;3 0.00018979 5712 20211116_3431_TMUAki_TMT10x_P_F4 139.14 106.82 1194900 1934600 442.63 1565800 1418400 2055100 1323600 1052200 1115200 1046200 1551300 1112400 1803900 85995 1630700 1356600 2040900 1341100 1120200 1159100 1022000 1483000 4 4 1 4 4 4 4 4 4 4 4 930030 1503700 442.63 1268700 1159900 1692800 1037500 870510 914830 859760 1199600 865850 1402200 67806 1317300 1108300 1679800 1055000 926250 946150 840130 1148400 3 3 1 3 3 3 3 3 3 3 3 264820 430940 0 297020 258540 362320 286090 181670 200390 186460 351760 246550 401610 18190 313450 248350 361020 286100 193970 212980 181910 334640 1 1 0 1 1 1 1 1 1 1 1 110940000 66632000 44312000 20257 769 18617 104611;104612;104613;104614 126774;126775;126776;126777 126775 4 VGEFSGANK Unmodified 907.43995 0.43994572 607 P10599;P10599-2 TXN Thioredoxin yes no 0 0 0 0 By MS/MS By MS/MS 4.4 0.49 3 2 2 3 38.015 38.105 2;3 0.00015833 10163 20211116_3433_TMUAki_TMT10x_P_F5 137.06 98.931 7683000 13000000 0 11856000 11196000 11698000 8799000 5315000 6173500 5698200 9238900 7153300 12126000 650830 12173000 10673000 11783000 8969300 5737600 6504100 5549400 8817600 5 5 0 5 5 5 5 5 5 5 5 6147400 10247000 0 9126100 9336500 10443000 6828400 4053200 4797500 4486800 7240000 5723600 9557200 523320 9409000 8887200 10414000 6994600 4456500 5056200 4364200 6908500 2 2 0 2 2 2 2 2 2 2 2 1535600 2752700 0 2729500 1859800 1255100 1970700 1261800 1376000 1211400 1999000 1429700 2568500 127520 2764100 1785800 1369700 1974700 1281100 1447900 1185200 1909000 3 3 0 3 3 3 3 3 3 3 3 372440000 250900000 121540000 20258 607 18618 104615;104616;104617;104618;104619 126778;126779;126780;126781;126782 126779 5 VGEIFSAAGAAFTK Unmodified 1367.7085 0.70851601 2159 Q8IXM2;Q8IXM2-2;Q8IXM2-3 BAP18 Chromatin complexes subunit BAP18 yes no 0 0 0 0 By MS/MS 2 0 1 1 77.497 77.447 2 8.9858E-19 26732 20211116_3429_TMUAki_TMT10x_P_F2 169.23 138.97 3631500 5917400 0 5546300 3563300 7164200 4692000 4122800 4109600 4086000 4772900 3381200 5520200 293680 5708600 3444600 7130300 4682200 4344200 4229800 3992100 4583700 1 1 0 1 1 1 1 1 1 1 1 3631500 5917400 0 5546300 3563300 7164200 4692000 4122800 4109600 4086000 4772900 3381200 5520200 293680 5708600 3444600 7130300 4682200 4344200 4229800 3992100 4583700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 430860000 430860000 0 20259 2159 18619 104620 126783 126783 1 VGEIVVFR Unmodified 917.53345 0.53345218 1411 P67812;P67812-4;P67812-3;P67812-2 SEC11A Signal peptidase complex catalytic subunit SEC11A yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 57.144 57.207 2 0.0074872 16405 20211116_3434_TMUAki_TMT10x_P_F6 89.296 54.488 12500000 19396000 93329 21640000 14342000 18612000 13615000 12438000 11647000 12464000 15336000 11639000 18107000 1097000 21873000 13736000 19009000 13787000 12958000 12066000 12172000 14680000 2 2 1 2 2 2 2 2 2 2 2 5421000 8000000 93329 9041400 8246400 11144000 6547000 5577000 5413100 5840900 6700600 5048200 7468700 575990 9181600 7870000 11098000 6694600 5959100 5602200 5693700 6424000 1 1 1 1 1 1 1 1 1 1 1 7078800 11396000 0 12599000 6095900 7467900 7067800 6860800 6234100 6623300 8635300 6590600 10638000 521040 12691000 5866100 7910600 7092600 6999100 6463800 6478400 8255900 1 1 0 1 1 1 1 1 1 1 1 814770000 317800000 496980000 20260 1411 18620 104621;104622;104623;104624 126784;126785;126786;126787 126784 4 VGENADSQIK Unmodified 1059.5197 0.51965261 534 P07305;P07305-2 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes no 0 0 0 0 By matching By MS/MS 2.5 0.5 1 1 1 1 34.602 34.371 2 2.5939E-08 10762 20211116_3441_TMUAki_TMT10x_S_F3 166.66 110.11 906850 1677300 19241 1504600 1181900 978050 1267700 970890 897140 968270 1263100 844510 1564500 96969 1539300 1136600 1028700 1270000 987420 941890 945770 1207100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 906850 1677300 19241 1504600 1181900 978050 1267700 970890 897140 968270 1263100 844510 1564500 96969 1539300 1136600 1028700 1270000 987420 941890 945770 1207100 1 1 1 1 1 1 1 1 1 1 1 49014000 21667000 27347000 20261 534 18621 104625;104626 126788 126788 1 VGEPVALSEEER Unmodified 1313.6463 0.64630969 1633 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 41.673 41.525 2 5.7356E-24 10588 20211116_3428_TMUAki_TMT10x_P_F1 245.08 199.4 3142200 4698700 0 6630900 9155900 6711700 3803100 3575200 4377100 2995800 4544300 2925400 4391600 305200 6629400 8641900 6762000 4155300 3775900 4433800 2949700 4378600 4 4 0 4 4 4 4 4 4 4 4 2718800 4068000 0 5759100 8872600 6430900 3475700 3115200 3800000 2612500 3935600 2531200 3802200 281120 5765900 8369800 6435400 3817800 3319600 3856400 2572200 3792300 3 3 0 3 3 3 3 3 3 3 3 423420 630700 0 871810 283290 280800 327410 459970 577170 383260 608730 394180 589410 24086 863530 272150 326540 337530 456330 577360 377470 586250 1 1 0 1 1 1 1 1 1 1 1 334020000 258530000 75485000 20262 1633 18622 104627;104628;104629;104630 126789;126790;126791;126792;126793 126789 5 VGEPVALSEEERLK Unmodified 1554.8253 0.82533668 1633 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 47.973 47.957 3 2.8784E-37 16274 20211116_3441_TMUAki_TMT10x_S_F3 241.07 210.18 19268000 30460000 205710 38080000 36239000 33915000 20069000 29279000 32274000 24747000 27898000 17942000 28451000 2019000 38247000 34354000 34703000 21581000 29867000 32144000 24356000 27048000 5 5 3 5 5 5 5 5 5 5 5 11456000 18136000 114000 23048000 29502000 28087000 14732000 17164000 19539000 14766000 15988000 10667000 16942000 1300900 23241000 27923000 28057000 15864000 17931000 19541000 14520000 15533000 3 3 1 3 3 3 3 3 3 3 3 7812000 12323000 91713 15032000 6737900 5828200 5337800 12114000 12735000 9981400 11910000 7274500 11509000 718100 15006000 6431000 6646300 5716600 11936000 12603000 9836300 11515000 2 2 2 2 2 2 2 2 2 2 2 2719100000 1600300000 1118800000 20263 1633 18623 104631;104632;104633;104634 126794;126795;126796;126797;126798 126797 5 VGEQAQVVIIDMNDPSNPIR Oxidation (M) 2210.1001 0.10013134 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 1 0 By MS/MS By MS/MS 3 0 2 1 1 59.96 59.622 3 7.8337E-08 21057 20211116_3441_TMUAki_TMT10x_S_F3 99.846 89.03 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20264 1471 18624 104635;104636 126799;126800 126800 1985 2 VGERQPLLGPPESMR Oxidation (M) 1680.8617 0.86173896 2588 Q99613;Q99613-2;B5ME19 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 0 0 1 1 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 35.661 35.762 3 3.4953E-05 7769 20211116_3444_TMUAki_TMT10x_S_F5 97.291 80.378 1655300 2533600 30537 3333500 4139700 3702700 2263300 2709700 2639500 1995100 2628100 1541400 2367100 197010 3349700 3923800 3727000 2405500 2783800 2668400 1977900 2535600 4 4 3 4 4 4 4 4 4 4 4 1356600 2041700 28276 2737900 3863500 3483500 2039400 2317000 2227500 1666300 2207100 1263400 1907700 173930 2755000 3660300 3476600 2169900 2395100 2257100 1654200 2129800 2 2 2 2 2 2 2 2 2 2 2 298680 491970 2260.9 595610 276260 219150 223830 392730 412050 328740 420940 278090 459450 23079 594670 263480 250370 235610 388620 411270 323700 405790 2 2 1 2 2 2 2 2 2 2 2 259720000 181970000 77747000 20265 2588 18625 104637;104638;104639 126801;126802;126803;126804 126803 2821 4 VGERQPLLGPPESMR Unmodified 1664.8668 0.86682434 2588 Q99613;Q99613-2;B5ME19 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 0 0 0 1 By MS/MS 6 0 2 2 40.815 40.979 3 2.1822E-14 10167 20211116_3445_TMUAki_TMT10x_S_F6 132.25 115.72 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20266 2588 18625 104640;104641 126805;126806 126805 2 VGEVCHITCKPEYAYGSAGSPPK Unmodified 2506.1621 0.16207966 1497 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 0 0 0 1 By MS/MS 7.4 0.49 3 2 5 44.931 45.223 4;5 2.1666E-07 13838 20211116_3446_TMUAki_TMT10x_S_F7 92.309 78.293 5567700 9737500 109320 13082000 3409500 3844500 2862500 7385400 7633900 6989500 8049600 5184800 9098600 522450 12972000 3261400 4565900 3079900 7318400 7572200 6842600 7752300 6 6 5 6 6 6 6 6 6 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5567700 9737500 109320 13082000 3409500 3844500 2862500 7385400 7633900 6989500 8049600 5184800 9098600 522450 12972000 3261400 4565900 3079900 7318400 7572200 6842600 7752300 6 6 5 6 6 6 6 6 6 6 6 1003300000 0 1003300000 20267 1497 18626 104642;104643;104644;104645;104646 126807;126808;126809;126810;126811;126812 126810 6 VGEVIVTK Unmodified 843.50657 0.50656873 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5.14 0.833 2 2 3 4 3 46.553 46.713 2 0.0010722 13361 20211116_3433_TMUAki_TMT10x_P_F5 128.69 65.2 58499000 93580000 320160 102340000 69083000 70822000 65167000 46879000 52584000 51352000 67376000 54468000 87352000 4865800 103310000 66133000 73555000 65917000 49006000 54571000 49969000 64537000 8 8 3 8 8 8 8 8 8 8 8 29154000 44988000 0 49388000 42815000 47069000 31279000 21726000 25885000 24542000 32630000 27142000 41995000 2286800 50039000 40742000 47524000 32164000 23453000 26809000 23853000 31268000 3 3 0 3 3 3 3 3 3 3 3 29346000 48591000 320160 52953000 26268000 23754000 33888000 25154000 26700000 26810000 34746000 27325000 45357000 2579000 53276000 25391000 26031000 33753000 25553000 27762000 26115000 33269000 5 5 3 5 5 5 5 5 5 5 5 1885300000 1082700000 802650000 20268 613 18627 104647;104648;104649;104650;104651;104652;104653 126813;126814;126815;126816;126817;126818;126819;126820;126821;126822 126815 10 VGEVIVTKDDAMLLK Oxidation (M) 1645.8961 0.89605879 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 1 1 By MS/MS By MS/MS 5.47 1.39 2 3 4 5 4 1 10 9 61.2 61.305 2;3;4 2.3243E-09 18103 20211116_3434_TMUAki_TMT10x_P_F6 107.09 84.447 284710000 486000000 3836800 446410000 370380000 463170000 295030000 576060000 572710000 505040000 456430000 265120000 453350000 27639000 458460000 353430000 473350000 311800000 577880000 566360000 496180000 443900000 22 22 18 22 22 22 22 22 22 22 22 104350000 165310000 1222300 155420000 170710000 249600000 126200000 186740000 176160000 162870000 151990000 97167000 154220000 10529000 160660000 162620000 247050000 131890000 192320000 176170000 160050000 147370000 11 11 8 11 11 11 11 11 11 11 11 180360000 320690000 2614500 290990000 199680000 213570000 168830000 389330000 396550000 342170000 304440000 167950000 299130000 17110000 297800000 190810000 226290000 179910000 385560000 390190000 336130000 296530000 11 11 10 11 11 11 11 11 11 11 11 50292000000 28689000000 21603000000 20269 613 18628 104654;104655;104656;104657;104658;104659;104660;104661;104662;104663;104664;104665;104666;104667;104668;104669;104670;104671;104672 126823;126824;126825;126826;126827;126828;126829;126830;126831;126832;126833;126834;126835;126836;126837;126838;126839;126840;126841;126842;126843;126844;126845;126846;126847;126848 126831 610 26 VGEVIVTKDDAMLLK Unmodified 1629.9011 0.90114416 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 5.77 1.48 1 2 2 4 2 2 7 6 67.369 67.435 3;4 2.5186E-19 22922 20211116_3446_TMUAki_TMT10x_S_F7 166.9 132.22 315610000 481750000 4503200 560480000 369270000 336080000 330720000 153960000 114870000 169860000 317820000 293890000 449820000 30202000 562860000 353320000 352120000 330800000 166200000 133510000 165240000 300300000 19 19 17 19 19 19 19 19 19 19 19 180710000 269390000 2695900 312730000 257270000 248870000 216600000 87061000 65634000 97578000 180820000 168270000 251530000 17655000 315020000 245770000 253840000 217160000 96999000 77465000 94866000 170860000 10 10 8 10 10 10 10 10 10 10 10 134900000 212360000 1807300 247750000 112000000 87209000 114120000 66895000 49238000 72286000 137000000 125620000 198290000 12548000 247840000 107550000 98289000 113640000 69201000 56044000 70376000 129440000 9 9 9 9 9 9 9 9 9 9 9 30226000000 15646000000 14580000000 20270 613 18628 104673;104674;104675;104676;104677;104678;104679;104680;104681;104682;104683;104684;104685 126849;126850;126851;126852;126853;126854;126855;126856;126857;126858;126859;126860;126861;126862;126863;126864;126865;126866;126867;126868 126866 20 VGEVTYVELFK Unmodified 1282.6809 0.68090428 3065 Q9P2K5;Q9P2K5-2 MYEF2 Myelin expression factor 2 yes no 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 75.456 75.432 2 4.2493E-14 25006 20211116_3433_TMUAki_TMT10x_P_F5 152.97 120.13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20271 3065 18629 104686;104687;104688 126869;126870;126871 126869 3 VGEVTYVELLMDAEGK Oxidation (M) 1767.8601 0.86006721 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 1 0 By MS/MS By MS/MS 2.33 0.933 9 15 16 2 1 24 19 50.46 50.382 2;3 3.5342E-09 26589 20211116_3442_TMUAki_TMT10x_S_F4 108.7 81.911 81805000 139370000 564370 130630000 88453000 127360000 104670000 72405000 77066000 86774000 100250000 76171000 130020000 6551900 133830000 85241000 128710000 104470000 76820000 80432000 84157000 95991000 30 30 18 30 30 30 30 30 30 30 30 54410000 87688000 236570 82687000 50941000 91730000 64045000 42999000 44111000 51872000 61475000 50661000 81803000 4472800 84843000 49175000 91796000 63662000 46443000 46364000 50295000 58765000 21 21 11 21 21 21 21 21 21 21 21 27396000 51687000 327810 47940000 37512000 35626000 40630000 29406000 32954000 34903000 38776000 25511000 48215000 2079200 48987000 36067000 36914000 40812000 30377000 34068000 33861000 37226000 9 9 7 9 9 9 9 9 9 9 9 15763000000 9355500000 6407400000 20272 1171 18630 104689;104690;104691;104692;104693;104694;104695;104696;104697;104698;104699;104700;104701;104702;104703;104704;104705;104706;104707;104708;104709;104710;104711;104712;104713;104714;104715;104716;104717;104718;104719;104720;104721;104722;104723;104724;104725;104726;104727;104728;104729;104730;104731 126872;126873;126874;126875;126876;126877;126878;126879;126880;126881;126882;126883;126884;126885;126886;126887;126888;126889;126890;126891;126892;126893;126894;126895;126896;126897;126898;126899;126900;126901;126902;126903;126904;126905;126906;126907;126908;126909;126910;126911;126912;126913;126914;126915 126914 1560 44 VGEVTYVELLMDAEGK Unmodified 1751.8652 0.86515259 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS By MS/MS 1.4 0.49 3 2 2 3 80.01 79.988 2;3 1.4474E-21 28237 20211116_3439_TMUAki_TMT10x_S_F1 177.1 142.57 22767000 35171000 236410 40089000 23599000 20851000 27435000 9133800 6512500 10921000 23157000 21200000 32837000 2095500 40263000 22737000 22165000 26980000 9931400 8131500 10593000 21824000 5 5 4 5 5 5 5 5 5 5 5 10131000 15580000 189030 17007000 9423500 11496000 11262000 3690700 2925100 4610200 8961600 9434500 14543000 1006200 17167000 9093400 11876000 11069000 4173900 3554800 4464600 8458100 2 2 2 2 2 2 2 2 2 2 2 12636000 19591000 47373 23083000 14175000 9355300 16173000 5443000 3587500 6311300 14195000 11766000 18293000 1089300 23096000 13643000 10289000 15911000 5757500 4576800 6128200 13365000 3 3 2 3 3 3 3 3 3 3 3 4027400000 2124000000 1903500000 20273 1171 18630 104732;104733;104734;104735;104736 126916;126917;126918;126919;126920 126919 5 VGFAEAAR Unmodified 819.4239 0.42390173 536 P07339 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.816 1 1 1 1 2 35.459 35.447 2 0.0023363 8620 20211116_3431_TMUAki_TMT10x_P_F4 110.81 54.686 2477100 4092600 25015 4140100 3958300 4206600 3023500 3543700 3706000 3085700 3703700 2306600 3819000 249430 4221200 3773500 4266400 3136800 3622700 3740300 3032600 3572900 3 3 3 3 3 3 3 3 3 3 3 1363100 2243900 5664.7 2214800 2701800 3139700 1830500 2012300 2141800 1759400 2001700 1269300 2093700 137040 2275400 2569000 3116200 1912000 2095300 2160400 1728800 1935400 1 1 1 1 1 1 1 1 1 1 1 1114000 1848700 19350 1925300 1256600 1066900 1192900 1531400 1564200 1326300 1701900 1037300 1725300 112390 1945800 1204400 1150200 1224800 1527400 1579900 1303800 1637500 2 2 2 2 2 2 2 2 2 2 2 139680000 103650000 36027000 20274 536 18631 104737;104738;104739 126921;126922;126923 126921 3 VGGGGVGGGLLENANPLIYQR Unmodified 2040.0752 0.075237214 3276 Q9Y3D0 FAM96B Mitotic spindle-associated MMXD complex subunit MIP18 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 3 2 1 70.458 70.414 3 2.3443E-32 22473 20211116_3436_TMUAki_TMT10x_P_F8 174.87 162.9 1792300 3182100 0 2521800 2389200 2042400 2237400 2279700 2072000 2270800 2061800 1668400 2966700 110490 2612100 2284000 2115500 2272300 2305600 2114800 2218100 1989300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1792300 3182100 0 2521800 2389200 2042400 2237400 2279700 2072000 2270800 2061800 1668400 2966700 110490 2612100 2284000 2115500 2272300 2305600 2114800 2218100 1989300 1 1 0 1 1 1 1 1 1 1 1 935370000 518670000 416700000 20275 3276 18632 104740;104741;104742 126924;126925 126924 2 VGGHAAEYGAEALER Unmodified 1528.727 0.72701962 36 CON__P01966 yes yes 0 0 0 0 By MS/MS By MS/MS 3 1.27 4 9 6 10 2 1 12 20 32.644 32.646 2;3 1.1627E-60 11816 20211116_3441_TMUAki_TMT10x_S_F3 300.95 101.74 + 34271000 55693000 430480 67477000 72486000 69992000 47022000 86696000 98329000 76790000 67070000 31912000 52012000 2979000 68043000 68883000 71524000 50616000 87007000 96678000 75405000 65668000 41 41 16 41 41 41 41 41 41 41 41 16539000 26608000 263500 32925000 57183000 56541000 30254000 40767000 43524000 34399000 30725000 15401000 24852000 1884600 33496000 54165000 55789000 32506000 42055000 43243000 33859000 30036000 13 13 7 13 13 13 13 13 13 13 13 17732000 29085000 166980 34551000 15303000 13452000 16768000 45929000 54805000 42391000 36345000 16511000 27160000 1094400 34546000 14718000 15735000 18110000 44952000 53435000 41547000 35632000 28 28 9 28 28 28 28 28 28 28 28 47551000000 29806000000 17746000000 20276 36 18633 104743;104744;104745;104746;104747;104748;104749;104750;104751;104752;104753;104754;104755;104756;104757;104758;104759;104760;104761;104762;104763;104764;104765;104766;104767;104768;104769;104770;104771;104772;104773;104774 126926;126927;126928;126929;126930;126931;126932;126933;126934;126935;126936;126937;126938;126939;126940;126941;126942;126943;126944;126945;126946;126947;126948;126949;126950;126951;126952;126953;126954;126955;126956;126957;126958;126959;126960;126961;126962;126963;126964;126965;126966;126967;126968;126969;126970;126971 126958 46 VGGNIEVLGFNAR Unmodified 1344.715 0.71499837 1735 Q14839;Q14839-2;Q8TDI0 CHD4;CHD5 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 1.12 2 2 2 2 4 4 61.351 61.56 2 5.4218E-30 19976 20211116_3435_TMUAki_TMT10x_P_F7 252.51 217.58 101330000 171800000 1027400 170400000 112420000 160920000 113290000 126090000 116840000 115070000 133690000 94351000 160300000 9271300 173790000 107860000 163740000 114980000 129630000 119310000 112830000 128440000 13 13 9 13 13 13 13 13 13 13 13 49860000 84023000 308830 79981000 60500000 109610000 60758000 62132000 57667000 55958000 62794000 46426000 78388000 4440300 82323000 58027000 108770000 61521000 65382000 58984000 54906000 60416000 7 7 5 7 7 7 7 7 7 7 7 51466000 87777000 718560 90415000 51921000 51311000 52531000 63958000 59175000 59107000 70896000 47925000 81916000 4831000 91467000 49836000 54969000 53458000 64244000 60325000 57927000 68028000 6 6 4 6 6 6 6 6 6 6 6 6632100000 3390100000 3242000000 20277 1735 18634 104775;104776;104777;104778;104779;104780;104781;104782 126972;126973;126974;126975;126976;126977;126978;126979;126980;126981;126982;126983;126984 126975 13 VGGPVYR Unmodified 746.40752 0.40752338 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 31.751 31.736 2 0.053127 7407 20211116_3433_TMUAki_TMT10x_P_F5 67.413 52.631 753820 1207100 0 1115100 1295700 1324000 850640 704630 765520 673730 939450 701840 1126000 64745 1147200 1230800 1322000 883480 746750 788680 659270 900870 1 1 0 1 1 1 1 1 1 1 1 753820 1207100 0 1115100 1295700 1324000 850640 704630 765520 673730 939450 701840 1126000 64745 1147200 1230800 1322000 883480 746750 788680 659270 900870 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 46855000 46855000 0 20278 157 18635 104783;104784 126985 126985 1 VGGRLEDTK Unmodified 973.51926 0.51925868 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 1 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 31.427 31.332 3 0.0057437 9552 20211116_3441_TMUAki_TMT10x_S_F3 68.525 42.111 2398100 3826500 11891 3413000 3213600 3518700 2545200 1873200 2056500 1864600 2819900 2232900 3569000 219990 3512600 3065200 3541100 2601500 1987300 2140600 1821400 2696600 3 3 2 3 3 3 3 3 3 3 3 1728900 2727900 11891 2431100 2382400 2956100 1802800 1388700 1521900 1378400 2036500 1609900 2544300 163580 2508900 2270500 2943800 1850300 1490700 1578800 1346700 1948600 2 2 2 2 2 2 2 2 2 2 2 669140 1098600 0 981880 831220 562640 742360 484490 534640 486190 783390 623030 1024700 56419 1003700 794690 597290 751230 496590 561820 474770 748010 1 1 0 1 1 1 1 1 1 1 1 102050000 75892000 26161000 20279 1079 18636 104785;104786;104787 126986;126987;126988 126988 3 VGGTSDVEVNEK Unmodified 1232.5885 0.58846046 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 37.137 36.894 2;3 3.0966E-18 11739 20211116_3441_TMUAki_TMT10x_S_F3 196.76 133.28 1344200 2224100 13652 2060900 1702800 1812700 1494100 1241400 1400600 1160000 1629900 1251700 2074700 126350 2110300 1628100 1849100 1523600 1288500 1437100 1136200 1565200 2 2 1 2 2 2 2 2 2 2 2 604210 1032200 13652 964880 955390 1106800 737210 621340 720000 554170 788510 562680 962900 67735 991210 911410 1107900 758660 654230 735660 544000 758530 1 1 1 1 1 1 1 1 1 1 1 740010 1191900 0 1096000 747370 705860 756920 620030 680560 605800 841430 689000 1111800 58614 1119000 716670 741220 764910 634310 701410 592240 806720 1 1 0 1 1 1 1 1 1 1 1 251930000 175560000 76368000 20280 613 18637 104788;104789;104790 126989;126990;126991 126991 3 VGGTSDVEVNEKK Unmodified 1360.6834 0.68342347 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 34.91 34.965 3 3.4348E-12 7341 20211116_3444_TMUAki_TMT10x_S_F5 157.09 127.75 6011000 9334300 75365 8724300 6854900 8011800 5821700 3465800 4375900 3754700 5831100 5597300 8707600 569840 8932600 6550700 8103700 5914500 3761900 4566600 3655200 5580000 3 3 2 3 3 3 3 3 3 3 3 5358300 8272200 59223 7705800 6239500 7502400 5125800 3106200 3938700 3364700 5165900 4989500 7716700 501210 7898200 5957600 7556700 5220800 3387800 4102400 3275500 4945300 2 2 1 2 2 2 2 2 2 2 2 652710 1062200 16142 1018500 615410 509410 695980 359620 437230 390070 665250 607860 990940 68636 1034500 593090 546990 693740 374110 464220 379710 634690 1 1 1 1 1 1 1 1 1 1 1 415590000 348050000 67545000 20281 613 18638 104791;104792;104793 126992;126993;126994 126994 3 VGGTSDVEVNEKKDR Unmodified 1631.8115 0.81147753 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 2 By MS/MS 4.5 0.5 1 1 2 32.298 32.283 4 6.4668E-15 7598 20211116_3433_TMUAki_TMT10x_P_F5 158.81 125.12 177530 336260 4506.2 264040 592180 842510 397210 615150 631480 496420 465610 165330 313490 24725 283120 563180 817500 420350 633360 626290 489720 454300 1 1 1 1 1 1 1 1 1 1 1 177530 336260 4506.2 264040 592180 842510 397210 615150 631480 496420 465610 165330 313490 24725 283120 563180 817500 420350 633360 626290 489720 454300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 133170000 133170000 0 20282 613 18639 104794;104795 126995 126995 1 VGGVGPADTHEPLRPEAEPGELERER Unmodified 2796.3791 0.37908339 2027 Q6WCQ1;Q6WCQ1-3;Q6WCQ1-2 MPRIP Myosin phosphatase Rho-interacting protein yes no 0 0 0 2 By MS/MS 1.5 0.5 1 1 2 37.915 37.795 5 2.802E-12 10591 20211116_3429_TMUAki_TMT10x_P_F2 115.11 92.466 1008800 1574500 15530 1762100 2369600 2369800 1343600 1356200 1421900 958210 1531100 939340 1469900 105980 1793500 2246500 2353900 1418900 1418100 1447000 952230 1473600 2 2 1 2 2 2 2 2 2 2 2 1008800 1574500 15530 1762100 2369600 2369800 1343600 1356200 1421900 958210 1531100 939340 1469900 105980 1793500 2246500 2353900 1418900 1418100 1447000 952230 1473600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 180190000 180190000 0 20283 2027 18640 104796;104797 126996;126997 126997 2 VGGVQSLGGTGALR Unmodified 1270.6993 0.69934831 703 P17174;P17174-2 GOT1 Aspartate aminotransferase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 44.345 44.317 2 4.3556E-43 11815 20211116_3436_TMUAki_TMT10x_P_F8 250.51 172.39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20284 703 18641 104798;104799;104800 126998;126999;127000 126998 3 VGHFDPVTR Unmodified 1026.5247 0.52467841 3189 Q9UNE7;Q9UNE7-2 STUB1 E3 ubiquitin-protein ligase CHIP yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 32.51 32.553 3 0.003963 8064 20211116_3433_TMUAki_TMT10x_P_F5 68.847 49.06 739990 1233500 10942 1124400 1110800 1197300 834130 694350 783770 752900 925030 688950 1150600 59705 1155900 1057600 1204000 859000 733110 804570 732910 887970 4 4 3 4 4 4 4 4 4 4 4 588560 940730 0 830380 918110 1020600 635520 544520 578420 583250 715040 547870 877390 36376 857760 872110 1017300 657650 578810 595790 568040 685550 1 1 0 1 1 1 1 1 1 1 1 151430 292780 10942 294020 192650 176760 198610 149840 205350 169650 209990 141080 273190 23329 298100 185530 186700 201350 154290 208780 164870 202430 3 3 3 3 3 3 3 3 3 3 3 44554000 38814000 5739900 20285 3189 18642 104801;104802 127001;127002;127003;127004 127001 4 VGHSELVGEIIR Unmodified 1307.7197 0.7197494 971 P38606;P38606-2 ATP6V1A V-type proton ATPase catalytic subunit A yes no 0 0 0 0 By MS/MS By MS/MS 4.83 1.07 1 1 2 2 4 2 44.806 44.91 3 6.3102E-12 12609 20211116_3433_TMUAki_TMT10x_P_F5 161.99 134.73 3260700 5402800 196520 6031800 5551400 5904200 3716600 4531400 4373800 4101400 4531900 3037500 5043700 485570 6107100 5288700 5991900 3886200 4663600 4426500 4023300 4366900 3 3 3 3 3 3 3 3 3 3 3 1591700 2736900 65928 2946300 3520600 4253800 2260400 2374900 2187800 1972600 2385000 1482500 2554600 220420 3010400 3348000 4210600 2356500 2497400 2235900 1943100 2294600 2 2 2 2 2 2 2 2 2 2 2 1669000 2665900 130590 3085500 2030800 1650500 1456200 2156600 2186100 2128700 2147000 1555000 2489100 265150 3096600 1940700 1781300 1529700 2166300 2190600 2080200 2072300 1 1 1 1 1 1 1 1 1 1 1 1337500000 965750000 371770000 20286 971 18643 104803;104804;104805;104806;104807;104808 127005;127006;127007 127006 3 VGHSIRHPDVEVDGFSELR Unmodified 2148.0712 0.071214468 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 1 By MS/MS 6 0 1 1 41.974 42.139 4 0.027444 10659 20211116_3445_TMUAki_TMT10x_S_F6 42.639 25.151 441530 723910 11935 824960 373740 387330 401860 614540 614070 477980 696290 411200 675860 46780 827920 359780 426680 412720 609270 618340 472450 669140 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 441530 723910 11935 824960 373740 387330 401860 614540 614070 477980 696290 411200 675860 46780 827920 359780 426680 412720 609270 618340 472450 669140 1 1 1 1 1 1 1 1 1 1 1 30689000 0 30689000 20287 586 18644 104809 127008 127008 1 VGIFTGAR Unmodified 819.46029 0.46028724 552 P08237;P08237-3;P08237-2 PFKM ATP-dependent 6-phosphofructokinase, muscle type yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 44.922 44.85 2 0.0019675 13600 20211116_3429_TMUAki_TMT10x_P_F2 116.9 79.875 1269500 2174100 9248.3 2589600 1284500 990610 1102900 1808400 1645300 1536600 2021400 1182100 2030200 114080 2588500 1227600 1126200 1145000 1789300 1663500 1511900 1938300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1269500 2174100 9248.3 2589600 1284500 990610 1102900 1808400 1645300 1536600 2021400 1182100 2030200 114080 2588500 1227600 1126200 1145000 1789300 1663500 1511900 1938300 1 1 1 1 1 1 1 1 1 1 1 158080000 98519000 59557000 20288 552 18645 104810;104811;104812;104813 127009;127010 127009 2 VGIGAFPTEQDNEIGELLQTR Unmodified 2286.1492 0.14919002 874 P30520 ADSS Adenylosuccinate synthetase isozyme 2 yes yes 0 0 0 0 By MS/MS By MS/MS 4 1.1 1 2 2 3 2 78.609 78.604 3 2.0413E-10 26524 20211116_3442_TMUAki_TMT10x_S_F4 112.44 101.39 7111700 11844000 100530 10691000 7577600 13147000 8678800 8873000 8341700 8155000 9647600 6622500 11047000 689830 11024000 7299500 13145000 8735300 9215600 8547400 7994100 9266300 3 3 3 3 3 3 3 3 3 3 3 5063300 8191200 77927 7483300 5053800 10721000 6235000 6660700 5994400 5905200 6825900 4715000 7640600 492280 7732600 4880300 10631000 6255200 6954500 6138300 5798400 6558900 2 2 2 2 2 2 2 2 2 2 2 2048400 3652700 22603 3207400 2523800 2425800 2443800 2212300 2347300 2249800 2821800 1907400 3406700 197550 3291900 2419300 2514600 2480100 2261200 2409100 2195700 2707400 1 1 1 1 1 1 1 1 1 1 1 3072700000 1817200000 1255600000 20289 874 18646 104814;104815;104816;104817;104818 127011;127012;127013 127013 3 VGIGPGSVCTTR Unmodified 1202.6078 0.60775611 3070 Q9P2T1;Q9P2T1-3;Q9P2T1-2 GMPR2 GMP reductase 2 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 37.296 37.68 2 4.3302E-24 8468 20211116_3447_TMUAki_TMT10x_S_F8 248.15 211.95 673130 1069400 0 1196300 1490000 1161200 787280 808160 923340 736270 989740 626660 998330 55605 1210900 1410300 1177200 839530 837350 935750 722040 952710 4 4 0 4 4 4 4 4 4 4 4 426200 655440 0 747380 1235700 967440 548470 502000 573080 467630 620750 396780 611940 39183 759250 1167100 961530 593030 532860 583630 458130 597340 3 3 0 3 3 3 3 3 3 3 3 246930 413950 0 448890 254330 193800 238810 306160 350260 268640 369000 229890 386390 16422 451660 243210 215690 246500 304490 352120 263910 355380 1 1 0 1 1 1 1 1 1 1 1 73370000 54247000 19123000 20290 3070 18647 104819;104820;104821 127014;127015;127016;127017 127017 4 VGIIPPK Unmodified 722.46906 0.46906101 1357 P62333 PSMC6 26S protease regulatory subunit 10B yes yes 0 0 0 0 By MS/MS 8 0 1 1 47.419 47.523 2 0.041148 13125 20211116_3436_TMUAki_TMT10x_P_F8 68.033 31.477 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20291 1357 18648 104822 127018 127018 1 VGILDVDLCGPSIPR Unmodified 1609.8498 0.84977729 3331 Q9Y5Y2 NUBP2 Cytosolic Fe-S cluster assembly factor NUBP2 yes yes 0 0 0 0 By MS/MS 5.67 0.471 1 2 3 76.089 76.044 2;3 3.2925E-14 24512 20211116_3445_TMUAki_TMT10x_S_F6 153.74 42.901 8617600 13964000 35909 14339000 10042000 7803000 10105000 5430000 4984900 6505300 9239600 8023100 13031000 638600 14504000 9624000 8299000 10088000 5672800 5446300 6309100 8781400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8617600 13964000 35909 14339000 10042000 7803000 10105000 5430000 4984900 6505300 9239600 8023100 13031000 638600 14504000 9624000 8299000 10088000 5672800 5446300 6309100 8781400 2 2 1 2 2 2 2 2 2 2 2 593660000 0 593660000 20292 3331 18649 104823;104824;104825 127019;127020;127021 127021 3 VGILLDEASGVNK Unmodified 1313.7191 0.7190807 1486 Q01780;Q01780-2 EXOSC10 Exosome component 10 yes no 0 0 0 0 By MS/MS 6 0 1 1 68.828 68.752 3 2.6135E-05 21582 20211116_3445_TMUAki_TMT10x_S_F6 99.589 69.782 1785800 2967300 61047 3056200 2037500 1838500 1793400 2082600 2092400 2024500 2345000 1663200 2769100 208480 3093400 1951200 1953500 1841100 2103400 2124600 1979700 2254300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1785800 2967300 61047 3056200 2037500 1838500 1793400 2082600 2092400 2024500 2345000 1663200 2769100 208480 3093400 1951200 1953500 1841100 2103400 2124600 1979700 2254300 1 1 1 1 1 1 1 1 1 1 1 283110000 0 283110000 20293 1486 18650 104826 127022 127022 1 VGINYQPPTVVPGGDLAK Unmodified 1823.9781 0.97814893 1417;2044;2007 P68363;P68363-2;P68366;P68366-2;Q71U36;Q71U36-2;Q9BQE3;P0DPH8;P0DPH7;P0DPH7-2;Q9NY65;Q9NY65-2;Q6PEY2 TUBA1B;TUBA4A;TUBA1A;TUBA1C;TUBA8;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-8 chain;Tubulin alpha-3E chain no no 0 0 0 0 By MS/MS By MS/MS 6.25 1.83 4 3 2 3 4 10 42 13 41 40 50.015 50.078 2;3;4 4.7854E-31 21055 20211116_3433_TMUAki_TMT10x_P_F5 190.1 173.08 222770000 384450000 2338300 378590000 266910000 346200000 247790000 275320000 256440000 266080000 294420000 207430000 358710000 19259000 386160000 255540000 353090000 252610000 283230000 261850000 260250000 282840000 107 107 53 107 107 107 107 107 107 107 107 107930000 178620000 1030500 178990000 136670000 229720000 136370000 132530000 121620000 128070000 138910000 100500000 166670000 9012400 183330000 131080000 228710000 137880000 139510000 124990000 125270000 133470000 56 56 21 56 56 56 56 56 56 56 56 114840000 205840000 1307900 199600000 130240000 116470000 111420000 142800000 134810000 138000000 155510000 106930000 192040000 10247000 202820000 124460000 124370000 114730000 143710000 136860000 134980000 149370000 51 51 32 51 51 51 51 51 51 51 51 367340000000 180300000000 187050000000 20294 1417;2044;2007 18651 104827;104828;104829;104830;104831;104832;104833;104834;104835;104836;104837;104838;104839;104840;104841;104842;104843;104844;104845;104846;104847;104848;104849;104850;104851;104852;104853;104854;104855;104856;104857;104858;104859;104860;104861;104862;104863;104864;104865;104866;104867;104868;104869;104870;104871;104872;104873;104874;104875;104876;104877;104878;104879;104880;104881;104882;104883;104884;104885;104886;104887;104888;104889;104890;104891;104892;104893;104894;104895;104896;104897;104898;104899;104900;104901;104902;104903;104904;104905;104906;104907 127023;127024;127025;127026;127027;127028;127029;127030;127031;127032;127033;127034;127035;127036;127037;127038;127039;127040;127041;127042;127043;127044;127045;127046;127047;127048;127049;127050;127051;127052;127053;127054;127055;127056;127057;127058;127059;127060;127061;127062;127063;127064;127065;127066;127067;127068;127069;127070;127071;127072;127073;127074;127075;127076;127077;127078;127079;127080;127081;127082;127083;127084;127085;127086;127087;127088;127089;127090;127091;127092;127093;127094;127095;127096;127097;127098;127099;127100;127101;127102;127103;127104;127105;127106;127107;127108;127109;127110;127111;127112;127113;127114;127115;127116;127117;127118;127119;127120;127121;127122;127123;127124;127125;127126;127127;127128;127129;127130;127131;127132;127133;127134;127135 127033 113 VGIVAWHPTAR Unmodified 1205.6669 0.66692597 3174 Q9ULV4;Q9ULV4-2;Q9ULV4-3 CORO1C Coronin-1C yes no 0 0 0 0 By MS/MS By matching 3 0 2 1 1 43.428 43.288 3 0.00022866 13220 20211116_3430_TMUAki_TMT10x_P_F3 86.276 61.423 440810 650060 6545.1 808540 962470 954930 598920 454400 413630 412170 578190 410490 607170 49952 815840 914120 952540 620780 486000 434740 404290 552670 1 1 1 1 1 1 1 1 1 1 1 440810 650060 6545.1 808540 962470 954930 598920 454400 413630 412170 578190 410490 607170 49952 815840 914120 952540 620780 486000 434740 404290 552670 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 63826000 34355000 29471000 20295 3174 18652 104908;104909 127136 127136 1 VGKDELFALEQSCAQVVLQAANER Unmodified 2674.3385 0.33846413 1859 Q16658 FSCN1 Fascin yes yes 0 0 0 1 By MS/MS By MS/MS 5.62 1.71 2 6 7 12 12 8 11 28 30 76.069 76.053 3;4 1.9215E-60 25386 20211116_3445_TMUAki_TMT10x_S_F6 234.64 226.04 203030000 335330000 2116200 301190000 224710000 263190000 250160000 156540000 147590000 178180000 231140000 189050000 312770000 17184000 309110000 216130000 268070000 249240000 165190000 157600000 173130000 220380000 63 64 29 64 63 64 64 63 64 63 63 84895000 135480000 874880 123320000 68704000 131480000 90358000 66071000 61851000 73781000 97140000 79050000 126380000 7000600 126790000 66456000 131970000 89640000 70708000 65423000 71741000 92615000 28 29 15 29 28 29 29 28 29 28 28 118140000 199840000 1241400 177870000 156000000 131720000 159800000 90468000 85740000 104400000 134000000 110000000 186390000 10183000 182320000 149670000 136100000 159600000 94481000 92179000 101390000 127770000 35 35 14 35 35 35 35 35 35 35 35 94840000000 41738000000 53102000000 20296 1859 18653 104910;104911;104912;104913;104914;104915;104916;104917;104918;104919;104920;104921;104922;104923;104924;104925;104926;104927;104928;104929;104930;104931;104932;104933;104934;104935;104936;104937;104938;104939;104940;104941;104942;104943;104944;104945;104946;104947;104948;104949;104950;104951;104952;104953;104954;104955;104956;104957;104958;104959;104960;104961;104962;104963;104964;104965;104966;104967 127137;127138;127139;127140;127141;127142;127143;127144;127145;127146;127147;127148;127149;127150;127151;127152;127153;127154;127155;127156;127157;127158;127159;127160;127161;127162;127163;127164;127165;127166;127167;127168;127169;127170;127171;127172;127173;127174;127175;127176;127177;127178;127179;127180;127181;127182;127183;127184;127185;127186;127187;127188;127189;127190;127191;127192;127193;127194;127195;127196;127197;127198;127199;127200;127201;127202;127203;127204;127205 127191 69 VGKGEPGAAPLSAPAFSLVFPFLK Unmodified 2399.3253 0.32530389 2350 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 1 By MS/MS By MS/MS 6 0 4 2 2 80.34 80.335 3;4 3.4119E-11 25870 20211116_3434_TMUAki_TMT10x_P_F6 108.64 87.439 19046000 31249000 116500 28591000 24423000 26073000 24007000 20344000 17478000 20896000 22018000 17733000 29148000 1474400 29318000 23396000 26588000 24171000 20990000 18228000 20385000 21100000 7 7 3 7 7 7 7 7 7 7 7 6098000 9510200 7482.5 8472200 6244100 12027000 7114100 6154900 5644200 6430400 6723500 5677400 8870200 454060 8769500 6005500 11902000 7125200 6562500 5844700 6268900 6452500 3 3 1 3 3 3 3 3 3 3 3 12949000 21739000 109020 20119000 18179000 14045000 16893000 14189000 11834000 14465000 15295000 12055000 20278000 1020300 20548000 17391000 14686000 17046000 14427000 12383000 14116000 14647000 4 4 2 4 4 4 4 4 4 4 4 4146000000 1882200000 2263800000 20297 2350 18654 104968;104969;104970;104971 127206;127207;127208;127209;127210;127211;127212 127206 7 VGLADLHPDVFATAPR Unmodified 1677.8839 0.88385462 2728 Q9BYD3;Q9BYD3-2 MRPL4 39S ribosomal protein L4, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 60.992 61.171 3 7.7767E-11 18421 20211116_3445_TMUAki_TMT10x_S_F6 131.72 119.09 13290000 22964000 170080 21064000 14360000 18368000 14302000 14475000 14151000 12962000 15840000 12375000 21421000 1275300 21582000 13778000 18790000 14506000 14868000 14463000 12721000 15228000 4 4 4 4 4 4 4 4 4 4 4 6104400 10217000 30502 9388400 6520600 10208000 6351100 6435700 6217900 5627900 7054000 5684000 9530300 540350 9648500 6249800 10264000 6446900 6709600 6361100 5529800 6778800 2 2 2 2 2 2 2 2 2 2 2 7185400 12747000 139570 11675000 7839700 8159100 7951000 8039000 7933300 7333700 8785900 6691400 11890000 734960 11934000 7528400 8526200 8058600 8158400 8101800 7191600 8449100 2 2 2 2 2 2 2 2 2 2 2 1541500000 490450000 1051000000 20298 2728 18655 104972;104973;104974 127213;127214;127215;127216 127215 4 VGLIAAR Unmodified 698.44391 0.44390889 1384 P62917 RPL8 60S ribosomal protein L8 yes yes 0 0 0 0 By MS/MS By MS/MS 5 2.92 2 1 1 2 2 4 4 38.567 38.779 2 0.0015323 8906 20211116_3447_TMUAki_TMT10x_S_F8 136.44 76.626 12291000 19679000 25514 19620000 15526000 19085000 12747000 14313000 15185000 13419000 15714000 11444000 18363000 968730 20012000 14811000 19368000 13150000 14767000 15360000 13142000 15142000 9 9 5 9 9 9 9 9 9 9 9 7148500 11157000 14907 11006000 10952000 14867000 7743200 8300400 8998200 7823300 9067500 6655200 10410000 550270 11296000 10414000 14760000 8060900 8756400 9101700 7660300 8745000 4 4 2 4 4 4 4 4 4 4 4 5142700 8522100 10607 8614500 4574400 4217100 5003600 6013000 6186900 5595600 6646000 4788400 7952400 418460 8715900 4396900 4607700 5089500 6010500 6258600 5482100 6397000 5 5 3 5 5 5 5 5 5 5 5 1269700000 707640000 562110000 20299 1384 18656 104975;104976;104977;104978;104979;104980;104981;104982 127217;127218;127219;127220;127221;127222;127223;127224;127225 127224 9 VGLKAPGIIPR Unmodified 1119.7128 0.71281353 805 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 47.115 47.139 3 0.00084359 12400 20211116_3444_TMUAki_TMT10x_S_F5 81.017 73.418 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20300 805 18657 104983;104984;104985;104986;104987 127226;127227;127228;127229;127230 127230 5 VGLNFSPGQSFPASQAHLR Unmodified 2012.0228 0.022807713 30 CON__ENSEMBL:ENSBTAP00000024146 yes yes 0 0 0 0 By MS/MS 3 0 1 1 56.247 55.852 3 0.0010722 19519 20211116_3441_TMUAki_TMT10x_S_F3 65.374 46.779 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20301 30 18658 104988 127231 127231 1 VGLPLLSPEFLLTGVLK Unmodified 1795.0859 0.085908466 1720 Q14676;Q14676-2;Q14676-3;Q14676-4 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 83.522 83.523 3 1.3747E-05 27256 20211116_3444_TMUAki_TMT10x_S_F5 90.367 71.043 1158100 1834400 48453 1879200 1530300 1445400 1360900 1280100 1266700 1310800 1535900 1078700 1711900 144440 1907500 1465900 1495500 1386400 1310700 1302300 1278900 1473300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1158100 1834400 48453 1879200 1530300 1445400 1360900 1280100 1266700 1310800 1535900 1078700 1711900 144440 1907500 1465900 1495500 1386400 1310700 1302300 1278900 1473300 2 2 1 2 2 2 2 2 2 2 2 79547000 0 79547000 20302 1720 18659 104989;104990;104991 127232;127233;127234 127234 3 VGLQVVAVK Unmodified 911.5804 0.58040237 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4 2.73 4 2 2 2 2 2 6 8 54.106 54.089 2;3 6.209E-06 15616 20211116_3428_TMUAki_TMT10x_P_F1 166.96 132.88 155350000 233770000 1997100 274270000 142780000 182290000 138040000 129350000 126450000 131420000 171850000 144650000 218280000 13890000 275570000 136860000 190190000 139910000 134250000 130760000 128270000 164370000 20 20 13 20 20 20 20 20 20 20 20 62800000 91141000 1033300 115020000 60645000 106490000 41546000 50135000 49149000 51505000 65463000 58477000 85134000 5694500 115530000 57703000 107740000 43376000 53859000 50247000 50246000 62645000 7 7 5 7 7 7 7 7 7 7 7 92549000 142630000 963780 159250000 82136000 75805000 96496000 79218000 77302000 79917000 106390000 86178000 133150000 8195600 160040000 79160000 82449000 96535000 80392000 80513000 78023000 101730000 13 13 8 13 13 13 13 13 13 13 13 15705000000 8845900000 6858800000 20303 613 18660 104992;104993;104994;104995;104996;104997;104998;104999;105000;105001;105002;105003;105004;105005 127235;127236;127237;127238;127239;127240;127241;127242;127243;127244;127245;127246;127247;127248;127249;127250;127251;127252;127253;127254;127255 127235 21 VGLQVVAVKAPGFGDNRK Unmodified 1854.0476 0.0475659 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 2 By MS/MS 4 0 1 1 53.03 53.196 4 1.1057E-08 15701 20211116_3431_TMUAki_TMT10x_P_F4 119.4 100.99 6144400 9868100 23711 10140000 10372000 15245000 8279000 11287000 10783000 9043800 9166100 5721300 9209000 590730 10401000 9894400 15126000 8584700 11609000 10803000 8925000 8892200 1 1 1 1 1 1 1 1 1 1 1 6144400 9868100 23711 10140000 10372000 15245000 8279000 11287000 10783000 9043800 9166100 5721300 9209000 590730 10401000 9894400 15126000 8584700 11609000 10803000 8925000 8892200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1328900000 1328900000 0 20304 613 18661 105006 127256 127256 1 VGLTNYAAAYCTGLLLAR Unmodified 1926.0033 0.003317824 1051 P46777 RPL5 60S ribosomal protein L5 yes yes 0 0 0 0 By MS/MS By MS/MS 4.6 0.8 3 6 14 2 15 10 76.506 76.499 2;3 5.337E-90 26012 20211116_3433_TMUAki_TMT10x_P_F5 321.34 291.79 99138000 160780000 1631100 153640000 110250000 145390000 111240000 87579000 70977000 92619000 111930000 92315000 150000000 8342800 157120000 105810000 147320000 111540000 92112000 75422000 90249000 106700000 19 19 13 19 19 19 19 19 19 19 19 56436000 88811000 952250 83010000 57086000 104550000 65095000 49736000 40415000 51482000 63795000 52552000 82848000 5167100 85415000 54969000 103940000 64846000 53387000 43025000 50208000 60817000 7 7 4 7 7 7 7 7 7 7 7 42701000 71968000 678840 70633000 53169000 40843000 46149000 37842000 30562000 41137000 48132000 39763000 67148000 3175700 71706000 50836000 43378000 46695000 38725000 32397000 40040000 45887000 12 12 9 12 12 12 12 12 12 12 12 31568000000 17001000000 14567000000 20305 1051 18662 105007;105008;105009;105010;105011;105012;105013;105014;105015;105016;105017;105018;105019;105020;105021;105022;105023;105024;105025;105026;105027;105028;105029;105030;105031 127257;127258;127259;127260;127261;127262;127263;127264;127265;127266;127267;127268;127269;127270;127271;127272;127273;127274;127275;127276;127277;127278;127279;127280;127281;127282;127283;127284 127263 28 VGLVLGR Unmodified 712.45956 0.45955895 3365 yes no 0 0 0 0 By MS/MS By MS/MS 4 3.12 2 3 3 3 5 44.977 44.916 2 0.0063581 11986 20211116_3428_TMUAki_TMT10x_P_F1 106.84 0 + 14387000 23326000 49320 23007000 16665000 16391000 14608000 16764000 15798000 15478000 19023000 13396000 21764000 1238800 23394000 15929000 17115000 14962000 16987000 16134000 15169000 18251000 9 9 5 9 9 9 9 9 9 9 9 3752900 5387100 24463 5590000 5714700 6752900 3781100 4222100 3918100 3754000 5047300 3494500 5027500 361410 5705800 5432400 6750800 3940600 4406500 4020000 3685600 4834000 2 2 2 2 2 2 2 2 2 2 2 10634000 17938000 24858 17417000 10951000 9638300 10827000 12542000 11880000 11724000 13976000 9901400 16737000 877390 17688000 10496000 10364000 11021000 12580000 12114000 11484000 13417000 7 7 3 7 7 7 7 7 7 7 7 662310000 229500000 432800000 20306 3365 18663 105032;105033;105034;105035;105036;105037;105038;105039 127285;127286;127287;127288;127289 127285 5 VGMGSGSICITQEVLACGRPQATAVYK Oxidation (M) 2868.3932 0.39321859 640 P12268 IMPDH2 Inosine-5'-monophosphate dehydrogenase 2 yes yes 0 0 1 1 By MS/MS 2 0 1 1 61.988 61.709 4 6.2406E-07 20360 20211116_3429_TMUAki_TMT10x_P_F2 81.974 69.045 1881400 3336900 16837 2999200 2183500 4049900 2702900 2411100 1945600 2290500 2545000 1751900 3112400 175900 3099200 2107700 4024100 2691100 2530500 2033700 2242000 2436600 1 1 1 1 1 1 1 1 1 1 1 1881400 3336900 16837 2999200 2183500 4049900 2702900 2411100 1945600 2290500 2545000 1751900 3112400 175900 3099200 2107700 4024100 2691100 2530500 2033700 2242000 2436600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1126800000 1126800000 0 20307 640 18664 105040 127290 127290 673 1 VGMVETNSQDRPVDDVK Unmodified 1887.8996 0.89964061 3273 Q9Y3C6 PPIL1 Peptidyl-prolyl cis-trans isomerase-like 1 yes yes 0 0 0 1 By MS/MS 4 0 1 1 41.031 41.093 3 0.00014348 10812 20211116_3431_TMUAki_TMT10x_P_F4 76.85 59.971 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20308 3273 18665 105041 127291 127291 1 VGNLGLATSFFNER Unmodified 1523.7732 0.77324153 104 O00571;O00571-2 DDX3X ATP-dependent RNA helicase DDX3X yes no 0 0 0 0 By MS/MS By MS/MS 3.92 3.1 4 4 1 4 7 6 75.294 75.256 2;3 2.7406E-60 23877 20211116_3447_TMUAki_TMT10x_S_F8 300.75 274.69 54572000 95745000 165330 87309000 61211000 86445000 65505000 56815000 55117000 59968000 70322000 50808000 89308000 4001400 89653000 58767000 87452000 65898000 59356000 57066000 58438000 67367000 17 17 5 17 17 17 17 17 17 17 17 31943000 53793000 55177 47755000 32780000 59782000 36651000 33096000 31294000 33769000 40038000 29740000 50172000 2211300 49324000 31506000 59560000 36809000 35016000 32381000 32953000 38353000 9 9 2 9 9 9 9 9 9 9 9 22629000 41951000 110160 39554000 28431000 26663000 28854000 23720000 23822000 26198000 30284000 21068000 39136000 1790100 40329000 27261000 27892000 29090000 24339000 24685000 25485000 29014000 8 8 3 8 8 8 8 8 8 8 8 19181000000 10649000000 8531400000 20309 104 18666 105042;105043;105044;105045;105046;105047;105048;105049;105050;105051;105052;105053;105054 127292;127293;127294;127295;127296;127297;127298;127299;127300;127301;127302;127303;127304;127305;127306;127307;127308 127308 17 VGNLTVVGKEPESILQVLSQMEK Oxidation (M) 2513.3411 0.34108989 703 P17174;P17174-2 GOT1 Aspartate aminotransferase, cytoplasmic yes no 0 0 1 1 By MS/MS 8 0 1 1 78.186 78.135 4 3.6001E-07 25067 20211116_3447_TMUAki_TMT10x_S_F8 83.602 68.512 4760700 7794200 68865 6599400 5729100 5032500 5747700 4661800 4445300 4841800 5116000 4433200 7268400 472440 6793400 5497900 5215100 5788800 4763900 4603100 4721400 4914400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4760700 7794200 68865 6599400 5729100 5032500 5747700 4661800 4445300 4841800 5116000 4433200 7268400 472440 6793400 5497900 5215100 5788800 4763900 4603100 4721400 4914400 1 1 1 1 1 1 1 1 1 1 1 720230000 0 720230000 20310 703 18667 105055 127309 127309 786 1 VGNNFHNLQEIR Unmodified 1439.727 0.72696004 3179 Q9UM13 ANAPC10 Anaphase-promoting complex subunit 10 yes yes 0 0 0 0 By MS/MS 6 0 1 1 37.554 37.55 3 0.0011407 8480 20211116_3434_TMUAki_TMT10x_P_F6 69.229 30.892 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20311 3179 18668 105056 127310 127310 1 VGNNFLR Unmodified 818.43989 0.43988615 2971 Q9NVH2;Q9NVH2-3;Q9NVH2-2 INTS7 Integrator complex subunit 7 yes no 0 0 0 0 By MS/MS 5 0 1 1 29.059 28.989 2 0.1096 6290 20211116_3433_TMUAki_TMT10x_P_F5 52.231 0 230580 383660 2733.1 369260 329940 414230 303710 204150 230010 210550 279970 214710 357950 23055 378400 315860 414500 307160 218360 238990 205370 268530 1 1 1 1 1 1 1 1 1 1 1 230580 383660 2733.1 369260 329940 414230 303710 204150 230010 210550 279970 214710 357950 23055 378400 315860 414500 307160 218360 238990 205370 268530 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14699000 14699000 0 20312 2971 18669 105057 127311 127311 1 VGNPFELDTQQGPQVDKEQFER Unmodified 2560.2194 0.21939485 880 P30837 ALDH1B1 Aldehyde dehydrogenase X, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 62.22 62.296 3 4.7834E-20 18891 20211116_3445_TMUAki_TMT10x_S_F6 156.87 141.61 9259800 15153000 100380 15958000 9475000 9909300 8727600 7489200 7948600 8580100 10812000 8622100 14142000 807450 16133000 9068700 10414000 8867700 7769300 8222000 8334800 10341000 3 3 2 3 3 3 3 3 3 3 3 2923200 4912500 48309 5128600 3101600 4687000 2953300 2256000 2436100 2571000 3383700 2722100 4584700 289870 5210200 2973100 4747400 2987400 2425900 2534600 2498000 3234800 1 1 1 1 1 1 1 1 1 1 1 6336600 10240000 52066 10830000 6373400 5222300 5774200 5233200 5512400 6009000 7427800 5900000 9557300 517580 10922000 6095600 5666300 5880300 5343400 5687400 5836800 7106100 2 2 1 2 2 2 2 2 2 2 2 1825800000 676240000 1149500000 20313 880 18670 105058;105059;105060 127312;127313;127314 127314 3 VGNPWDPNVLYGPLHTK Unmodified 1905.9737 0.97373226 1098 P49419-2;P49419 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS 2.88 2.09 2 2 3 1 5 3 52.939 52.834 3 5.0366E-13 21895 20211116_3440_TMUAki_TMT10x_S_F2 140.89 123.41 49995000 87560000 602630 87441000 54691000 58808000 61937000 37876000 33491000 43108000 56564000 46554000 81702000 4171400 88784000 52647000 61206000 61566000 39723000 36135000 41886000 53851000 13 13 7 13 13 13 13 13 13 13 13 14545000 23810000 245860 23144000 15927000 24734000 19218000 10531000 10856000 12884000 16133000 13544000 22215000 1343900 23682000 15362000 24780000 19063000 11494000 11597000 12486000 15400000 6 6 3 6 6 6 6 6 6 6 6 35450000 63750000 356770 64296000 38764000 34074000 42719000 27345000 22636000 30225000 40430000 33010000 59488000 2827500 65102000 37285000 36425000 42503000 28229000 24538000 29400000 38451000 7 7 4 7 7 7 7 7 7 7 7 5553900000 2610100000 2943900000 20314 1098 18671 105061;105062;105063;105064;105065;105066;105067;105068 127315;127316;127317;127318;127319;127320;127321;127322;127323;127324;127325;127326;127327 127323 13 VGNVEYFGLGNSPGFPLQYYPYYGK Unmodified 2828.3486 0.34861811 498 P05026;P05026-2 ATP1B1 Sodium/potassium-transporting ATPase subunit beta-1 yes no 0 0 0 0 By MS/MS 3 0 1 1 80.097 80.046 3 9.7414E-09 29242 20211116_3441_TMUAki_TMT10x_S_F3 89.946 81.127 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20315 498 18672 105069 127328 127328 1 VGPADDGPAPSGEEEGEGGGEAGGKEPAADAAPGPSAAFR Unmodified 3633.6092 0.6091555 3159 Q9UKN8 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 0 0 0 1 By MS/MS 3 0 1 1 48.701 48.348 4 4.9694E-54 16460 20211116_3441_TMUAki_TMT10x_S_F3 192.02 186.65 565810 1130400 7983.6 1300600 379370 301830 169040 1031200 1051600 846400 922940 526880 1055400 51739 1299900 358950 385480 209790 1006100 1026600 834250 894310 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 565810 1130400 7983.6 1300600 379370 301830 169040 1031200 1051600 846400 922940 526880 1055400 51739 1299900 358950 385480 209790 1006100 1026600 834250 894310 1 1 1 1 1 1 1 1 1 1 1 141580000 0 141580000 20316 3159 18673 105070 127329 127329 1 VGPDVVTDPAFLVTR Unmodified 1584.8512 0.8511575 2961 Q9NV31 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 71.723 71.782 2 0.00017263 23547 20211116_3433_TMUAki_TMT10x_P_F5 87.241 61.582 3250700 5396400 31488 5189400 3288600 5635900 3809300 3627900 3216600 3326100 4054400 3027000 5034600 299380 5315300 3168300 5668800 3818400 3780900 3328000 3260900 3885200 1 1 1 1 1 1 1 1 1 1 1 3250700 5396400 31488 5189400 3288600 5635900 3809300 3627900 3216600 3326100 4054400 3027000 5034600 299380 5315300 3168300 5668800 3818400 3780900 3328000 3260900 3885200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 685410000 685410000 0 20317 2961 18674 105071;105072 127330 127330 1 VGPGAGESPGTPPFR Unmodified 1424.7048 0.70482762 2287 Q8TEQ6 GEMIN5 Gem-associated protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 2 2 42.902 43.016 2 5.8E-21 11888 20211116_3433_TMUAki_TMT10x_P_F5 179.72 162.48 2266100 3920500 7334.2 4761200 4261100 4191400 2574800 4187400 4168800 3092000 3848900 2110000 3661400 222650 4789400 4043800 4305000 2749200 4224900 4160000 3064900 3722800 2 2 2 2 2 2 2 2 2 2 2 1253700 2075800 29.105 2483900 3539700 3575000 2038500 2311500 2183400 1687200 1982500 1167400 1938500 135990 2521500 3356300 3546200 2150700 2395300 2207800 1673500 1918700 1 1 1 1 1 1 1 1 1 1 1 1012300 1844700 7305.1 2277300 721430 616480 536320 1875900 1985400 1404800 1866300 942630 1722900 86663 2267900 687530 758780 598550 1829600 1952200 1391400 1804100 1 1 1 1 1 1 1 1 1 1 1 293490000 196810000 96676000 20318 2287 18675 105073;105074;105075;105076 127331;127332;127333;127334 127332 4 VGPGDRPLYLHVQGQTR Unmodified 1892.0017 0.0016783401 2095 Q7Z7F0;Q7Z7F0-3;Q7Z7F0-2;Q7Z7F0-4 KIAA0907 UPF0469 protein KIAA0907 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 36.16 36.13 4 0.00023461 8424 20211116_3428_TMUAki_TMT10x_P_F1 77.39 54.511 1044100 1727100 19664 2134600 1685400 1748400 1165600 1197000 1376900 1117100 1436100 972280 1613100 113870 2143100 1604100 1792600 1216000 1242500 1393600 1094300 1383500 2 2 2 2 2 2 2 2 2 2 2 505630 807210 16122 1012700 1272800 1239500 690390 605530 735370 532280 699510 470910 753980 67690 1022000 1206700 1234500 732140 645460 744880 522870 675910 1 1 1 1 1 1 1 1 1 1 1 538440 919920 3541.7 1121900 412570 508910 475180 591480 641500 584790 736550 501360 859140 46178 1121100 397380 558110 483870 597010 648710 571410 707580 1 1 1 1 1 1 1 1 1 1 1 128080000 89448000 38632000 20319 2095 18676 105077;105078 127335;127336 127335 2 VGQAVDVVGQAGKPK Unmodified 1451.8096 0.80962704 1609 Q13200;Q13200-3;Q13200-2 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 2 4 3 3 44.685 44.899 3;4 3.7016E-19 12064 20211116_3436_TMUAki_TMT10x_P_F8 160.81 138.17 11211000 18852000 87920 18343000 17271000 17565000 13740000 12754000 13637000 11933000 15085000 10438000 17589000 1030600 18737000 16472000 17834000 14119000 13186000 13929000 11688000 14508000 6 6 3 6 6 6 6 6 6 6 6 6276900 10423000 0 10091000 11727000 12651000 7587800 6988300 7741500 6616400 8075400 5843900 9724300 531090 10356000 11136000 12602000 7917800 7379800 7880800 6477200 7779700 3 3 0 3 3 3 3 3 3 3 3 4933600 8429300 87920 8252300 5544200 4914300 6152600 5765800 5895400 5316600 7010100 4594300 7864800 499520 8381300 5336600 5231300 6201000 5805800 6048300 5211000 6727900 3 3 3 3 3 3 3 3 3 3 3 1188300000 801340000 386960000 20320 1609 18677 105079;105080;105081;105082;105083;105084 127337;127338;127339;127340;127341;127342 127338 6 VGQEIEVRPGIVSK Unmodified 1509.8515 0.85149185 993 P41091 EIF2S3 Eukaryotic translation initiation factor 2 subunit 3 yes yes 0 0 0 1 By MS/MS By MS/MS 5.71 1.03 1 2 2 2 4 3 46.29 46.54 3 3.5552E-06 14450 20211116_3446_TMUAki_TMT10x_S_F7 106.6 85.644 60129000 94618000 258310 108120000 91866000 90281000 67041000 70022000 75169000 65896000 81150000 55987000 88339000 5476200 109080000 87464000 92618000 69552000 72092000 76328000 64527000 78097000 9 9 5 9 9 9 9 9 9 9 9 29646000 46565000 210710 52501000 63433000 66829000 38214000 34790000 36796000 32629000 39263000 27605000 43473000 3109100 53355000 60200000 66477000 40037000 36925000 37584000 31956000 37799000 5 5 3 5 5 5 5 5 5 5 5 30483000 48053000 47601 55623000 28433000 23453000 28826000 35231000 38373000 33267000 41887000 28381000 44866000 2367100 55729000 27264000 26141000 29515000 35168000 38745000 32571000 40298000 4 4 2 4 4 4 4 4 4 4 4 4340000000 2780200000 1559800000 20321 993 18678 105085;105086;105087;105088;105089;105090;105091 127343;127344;127345;127346;127347;127348;127349;127350 127350 8 VGQGYPHDPPK Unmodified 1193.5829 0.58292157 1292 P61081 UBE2M NEDD8-conjugating enzyme Ubc12 yes yes 0 0 0 0 By MS/MS 5 0 1 1 32.034 31.974 3 0.0031782 7500 20211116_3433_TMUAki_TMT10x_P_F5 65.395 40.604 685360 999490 17354 1033700 1230600 1103200 727650 526250 635130 575280 737890 638270 932750 80632 1053100 1168400 1106700 761520 565640 653830 559820 708630 1 1 1 1 1 1 1 1 1 1 1 685360 999490 17354 1033700 1230600 1103200 727650 526250 635130 575280 737890 638270 932750 80632 1053100 1168400 1106700 761520 565640 653830 559820 708630 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 44974000 44974000 0 20322 1292 18679 105092 127351 127351 1 VGQISFDLPR Unmodified 1130.6084 0.60840804 3305 Q9Y4W6 AFG3L2 AFG3-like protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 61.386 61.989 2 0.0061892 20176 20211116_3435_TMUAki_TMT10x_P_F7 74.6 35.378 14893000 24589000 4616 24829000 18487000 21788000 15530000 18672000 17388000 18191000 18959000 13866000 22945000 1245200 25268000 17649000 22314000 15965000 19127000 17664000 17786000 18241000 2 2 1 2 2 2 2 2 2 2 2 6488800 11052000 4616 10790000 9633700 14125000 7969700 7752100 7488900 8011400 7931400 6041800 10312000 586320 11076000 9195700 14041000 8156200 8211100 7655400 7813600 7637500 1 1 1 1 1 1 1 1 1 1 1 8404000 13537000 0 14040000 8853300 7662800 7560100 10920000 9899400 10179000 11028000 7824600 12633000 658910 14192000 8453600 8272900 7808600 10916000 10009000 9972100 10603000 1 1 0 1 1 1 1 1 1 1 1 741820000 310310000 431510000 20323 3305 18680 105093;105094 127352;127353 127352 2 VGQLSEGAIAAIMQK Oxidation (M) 1530.8076 0.80757813 828 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 0 0 1 0 By MS/MS By MS/MS 7.5 0.5 2 2 3 1 66.924 67.166 3 1.1988E-06 20597 20211116_3447_TMUAki_TMT10x_S_F8 106.42 90.668 2343500 4859400 55703 4062900 2827100 3183800 3072900 3727200 3808800 3411900 3608900 2182400 4531300 252980 4187900 2720300 3309800 3126900 3752700 3835500 3345200 3487600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2343500 4859400 55703 4062900 2827100 3183800 3072900 3727200 3808800 3411900 3608900 2182400 4531300 252980 4187900 2720300 3309800 3126900 3752700 3835500 3345200 3487600 1 1 1 1 1 1 1 1 1 1 1 945560000 370150000 575410000 20324 828 18681 105095;105096;105097;105098 127354;127355;127356 127356 1000 3 VGQTIER Unmodified 801.43447 0.43446642 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 1 1 1 1 3 1 29.557 29.442 2 0.04011 8859 20211116_3441_TMUAki_TMT10x_S_F3 74.486 13.591 1337100 2043300 958.6 1794700 1541000 1874000 1431700 990950 1040300 983210 1458000 1245000 1905600 108560 1849700 1474500 1884400 1445900 1051900 1090300 960570 1393500 3 3 1 3 3 3 3 3 3 3 3 862330 1298200 958.6 1192700 1017100 1360300 879470 676440 711490 669260 955460 802920 1211000 74501 1226700 971800 1360100 894080 722050 739820 653930 914140 2 2 1 2 2 2 2 2 2 2 2 474810 745020 0 602020 523950 513700 552250 314520 328840 313950 502520 442040 694640 34055 622940 502710 524290 551780 329810 350480 306640 479380 1 1 0 1 1 1 1 1 1 1 1 36718000 19027000 17690000 20325 1171 18682 105099;105100;105101;105102 127357;127358;127359 127359 3 VGRPIVEALR Unmodified 1108.6717 0.671677 1265 P57678 GEMIN4 Gem-associated protein 4 yes yes 0 0 0 1 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 38.315 38.515 3 0.00049215 9285 20211116_3436_TMUAki_TMT10x_P_F8 97.452 66.888 1528600 2457500 53941 2665500 1736700 1899800 1659700 1761700 2002400 1636000 2000600 1423600 2293900 179920 2693100 1666600 1979600 1698100 1794300 2022000 1602900 1930000 3 3 3 3 3 3 3 3 3 3 3 367950 555820 10410 592790 726120 778570 426220 469800 523910 417440 459840 342670 518770 45223 604910 689330 774760 451040 491680 526440 409850 445570 1 1 1 1 1 1 1 1 1 1 1 1160600 1901700 43532 2072700 1010600 1121300 1233400 1291900 1478500 1218500 1540800 1081000 1775100 134690 2088200 977260 1204800 1247100 1302700 1495600 1193100 1484400 2 2 2 2 2 2 2 2 2 2 2 93362000 27151000 66212000 20326 1265 18683 105103;105104;105105 127360;127361;127362 127360 3 VGRPSNIGQAQPIIDQLAEEAR Unmodified 2361.2401 0.24007071 3124 Q9UHX1-6;Q9UHX1-5;Q9UHX1-4;Q9UHX1-2;Q9UHX1;Q9UHX1-3 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 0 0 0 1 By MS/MS By MS/MS 5.67 0.943 1 3 3 2 3 6 61.675 61.831 3;4 5.0815E-27 18596 20211116_3445_TMUAki_TMT10x_S_F6 175.34 152.9 39249000 68803000 534170 65054000 49419000 65835000 47775000 60053000 55247000 55994000 57709000 36547000 64186000 3712500 66643000 47365000 66890000 48777000 61228000 55965000 54854000 55593000 15 15 12 15 15 15 15 15 15 15 15 13774000 23822000 94620 22572000 19308000 35229000 19210000 22190000 20637000 20039000 20737000 12825000 22224000 1261900 23305000 18514000 34816000 19534000 23155000 20935000 19660000 20001000 6 6 4 6 6 6 6 6 6 6 6 25475000 44981000 439550 42482000 30111000 30606000 28565000 37863000 34610000 35955000 36972000 23722000 41962000 2450600 43337000 28851000 32075000 29243000 38073000 35029000 35194000 35592000 9 9 8 9 9 9 9 9 9 9 9 10790000000 4713200000 6077300000 20327 3124 18684 105106;105107;105108;105109;105110;105111;105112;105113;105114 127363;127364;127365;127366;127367;127368;127369;127370;127371;127372;127373;127374;127375;127376;127377 127373 15 VGRRPDQQLQGEGK Unmodified 1566.8227 0.82265134 2232 Q8NC51;Q8NC51-3;Q8NC51-2;Q8NC51-4 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 0 0 0 2 By MS/MS 5 0 1 1 29.799 29.732 4 4.0498E-05 6575 20211116_3433_TMUAki_TMT10x_P_F5 99.927 78.054 300710 453000 7996.5 454990 492260 551150 351420 286780 336620 281520 379070 280050 422700 35066 465460 468950 549600 363360 304760 344610 275160 364360 1 1 1 1 1 1 1 1 1 1 1 300710 453000 7996.5 454990 492260 551150 351420 286780 336620 281520 379070 280050 422700 35066 465460 468950 549600 363360 304760 344610 275160 364360 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23087000 23087000 0 20328 2232 18685 105115 127378 127378 1 VGSAADIPINISETDLSLLTATVVPPSGR Unmodified 2892.5444 0.54441738 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 7 0.816 2 2 2 4 2 81.494 81.503 3;4 5.835E-65 28434 20211116_3435_TMUAki_TMT10x_P_F7 233.54 210.79 2959400 6731500 95130 6411600 4644600 6846000 4941500 3490900 4913300 4427100 5753600 2756000 6280000 244160 6570000 4465400 6872000 4995900 3682800 5029500 4285100 5524200 6 7 3 7 7 7 7 6 7 7 7 2632000 4951900 95130 4977000 2858700 5810200 3240600 3319400 3361100 3100800 3877900 2451200 4620800 244160 5088100 2755200 5811600 3270800 3494100 3432400 3037400 3724900 5 5 3 5 5 5 5 5 5 5 5 327310 1779500 0 1434500 1785900 1035800 1700900 171500 1552100 1326200 1875700 304760 1659200 0 1481900 1710200 1060400 1725100 188670 1597000 1247700 1799400 1 2 0 2 2 2 2 1 2 2 2 4887500000 2558500000 2329000000 20329 755 18686 105116;105117;105118;105119;105120;105121 127379;127380;127381;127382;127383;127384;127385 127380 7 VGSAADIPINISETDLSLLTATVVPPSGREEPCLLKR Unmodified 3918.0772 0.077217634 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 2 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 79.083 79.111 4 3.7879E-74 27482 20211116_3435_TMUAki_TMT10x_P_F7 228.53 219.98 3529000 5645700 19163 4472800 4146800 3982800 3835700 2573400 2207300 2695600 3466000 3285200 5263600 219820 4638600 3963000 4056000 3856600 2691200 2361500 2627600 3304600 2 2 1 2 2 2 2 2 2 2 2 1438900 1973500 19163 1855400 1178900 2184500 1471600 1169800 1117400 1263800 1540900 1339900 1841000 133510 1906000 1138900 2182300 1466400 1243300 1167200 1230400 1473400 1 1 1 1 1 1 1 1 1 1 1 2090100 3672200 0 2617500 2967900 1798300 2364100 1403600 1090000 1431800 1925100 1945300 3422600 86309 2732500 2824100 1873700 2390200 1447900 1194200 1397200 1831200 1 1 0 1 1 1 1 1 1 1 1 3013200000 1811000000 1202200000 20330 755 18687 105122;105123;105124 127386;127387 127386 2 VGSEIER Unmodified 788.40283 0.40283194 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 30.266 30.212 2 0.0474 7635 20211116_3429_TMUAki_TMT10x_P_F2 70.525 21.769 1845400 2966400 5686.4 2685000 2337000 2790900 2120700 1454300 1585300 1433100 2380300 1718200 2766900 155570 2760600 2235100 2806600 2145800 1545500 1664400 1400500 2271600 4 4 1 4 4 4 4 4 4 4 4 1379700 2196800 5686.4 2031600 1816300 2381800 1589700 1102100 1229700 1090700 1828300 1284600 2049200 120500 2089500 1735900 2376100 1613200 1184800 1288000 1065700 1745100 3 3 1 3 3 3 3 3 3 3 3 465750 769600 0 653380 520630 409140 530990 352200 355640 342420 552070 433630 717690 35072 671110 499190 430590 532640 360670 376440 334830 526480 1 1 0 1 1 1 1 1 1 1 1 63377000 43667000 19711000 20331 1171 18688 105125;105126;105127 127388;127389;127390 127388 3 VGSHITGGDIYGIVSENSLIK Unmodified 2158.127 0.12699801 971 P38606;P38606-2 ATP6V1A V-type proton ATPase catalytic subunit A yes no 0 0 0 0 By MS/MS By MS/MS 7.25 0.433 3 1 3 1 68.91 69.309 3 8.8387E-27 23754 20211116_3446_TMUAki_TMT10x_S_F7 174.19 156.41 2759400 5041500 68191 5108100 3774100 3361700 3475800 3232400 2748700 3145900 4023400 2569700 4704500 306530 5180300 3615400 3529500 3518800 3290400 2873400 3076000 3841800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2759400 5041500 68191 5108100 3774100 3361700 3475800 3232400 2748700 3145900 4023400 2569700 4704500 306530 5180300 3615400 3529500 3518800 3290400 2873400 3076000 3841800 1 1 1 1 1 1 1 1 1 1 1 1682700000 1062200000 620490000 20332 971 18689 105128;105129;105130;105131 127391;127392;127393 127393 3 VGSLDNVGHLPAGGAVK Unmodified 1589.8526 0.85255449 833 P27816;P27816-6;P27816-2;P27816-5;P27816-4 MAP4 Microtubule-associated protein 4 yes no 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 48.417 48.899 3 0.030732 15405 20211116_3446_TMUAki_TMT10x_S_F7 40.014 25.323 1627100 2610800 43672 3879400 1246600 1191300 1083600 1710200 1897700 1769800 2397200 1515300 2440900 170270 3827800 1193800 1391100 1132900 1714400 1912700 1726000 2297000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1627100 2610800 43672 3879400 1246600 1191300 1083600 1710200 1897700 1769800 2397200 1515300 2440900 170270 3827800 1193800 1391100 1132900 1714400 1912700 1726000 2297000 1 1 1 1 1 1 1 1 1 1 1 266190000 0 266190000 20333 833 18690 105132;105133 127394;127395 127395 2 VGSLGLPAHPR Unmodified 1102.6247 0.6247268 1548 Q08378;Q08378-2;Q08378-4 GOLGA3 Golgin subfamily A member 3 yes no 0 0 0 0 By MS/MS By matching 1 0 2 1 1 36.878 36.849 3 0.0024431 8730 20211116_3428_TMUAki_TMT10x_P_F1 69.786 57.92 492920 771400 2944 815020 1044800 1007300 638070 538150 536950 473390 680640 458980 719960 51340 831250 991790 1003700 665360 568890 555780 465000 652140 1 1 1 1 1 1 1 1 1 1 1 492920 771400 2944 815020 1044800 1007300 638070 538150 536950 473390 680640 458980 719960 51340 831250 991790 1003700 665360 568890 555780 465000 652140 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 55648000 32759000 22890000 20334 1548 18691 105134;105135 127396 127396 1 VGSLNCIVAVSQNMGIGK Oxidation (M) 1861.939 0.93900301 464 P00374 DHFR Dihydrofolate reductase yes yes 0 0 1 0 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 66.497 66.221 3 1.3505E-06 22218 20211116_3429_TMUAki_TMT10x_P_F2 99.044 78.394 18095000 30157000 315270 26233000 20695000 33997000 20627000 21405000 19205000 20151000 22283000 16851000 28125000 1808000 27155000 19859000 33872000 20882000 22361000 19710000 19732000 21401000 5 5 4 5 5 5 5 5 5 5 5 13807000 22585000 204080 19706000 14705000 28994000 16189000 16509000 14714000 15696000 17079000 12857000 21063000 1325000 20446000 14148000 28683000 16298000 17391000 15117000 15363000 16403000 4 4 3 4 4 4 4 4 4 4 4 4288700 7572400 111180 6526600 5990100 5003100 4437800 4896000 4491800 4455000 5204000 3994000 7061900 483010 6709300 5711300 5188400 4584300 4970200 4592500 4369200 4998100 1 1 1 1 1 1 1 1 1 1 1 1386200000 1029200000 356960000 20335 464 18692 105136;105137;105138 127397;127398;127399;127400;127401 127397 350 5 VGSLNCIVAVSQNMGIGK Unmodified 1845.9441 0.94408839 464 P00374 DHFR Dihydrofolate reductase yes yes 0 0 0 0 By MS/MS 4 0 1 1 77.31 77.327 2 6.6602E-09 25598 20211116_3431_TMUAki_TMT10x_P_F4 120.53 97.3 3237100 4673600 0 5436600 2721800 2892700 3368800 1158200 1085000 1341700 2732900 3013700 4363800 210320 5454300 2622800 3064900 3312600 1270600 1262200 1302800 2585300 1 1 0 1 1 1 1 1 1 1 1 3237100 4673600 0 5436600 2721800 2892700 3368800 1158200 1085000 1341700 2732900 3013700 4363800 210320 5454300 2622800 3064900 3312600 1270600 1262200 1302800 2585300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 425560000 425560000 0 20336 464 18692 105139 127402 127402 1 VGSPERPLSDLGLISYR Unmodified 1857.9949 0.99486163 417 O95251;O95251-2;O95251-4;O95251-3;O95251-5 KAT7 Histone acetyltransferase KAT7 yes no 0 0 0 1 By MS/MS 8 0 1 1 60.108 60.11 3 3.334E-15 17706 20211116_3447_TMUAki_TMT10x_S_F8 142.26 128.1 2742800 4878400 23977 4324700 3812800 3024500 3133600 4169900 2954900 3902200 4098600 2554000 4550000 264730 4431600 3640200 3187100 3208600 4173800 3054500 3822100 3918400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2742800 4878400 23977 4324700 3812800 3024500 3133600 4169900 2954900 3902200 4098600 2554000 4550000 264730 4431600 3640200 3187100 3208600 4173800 3054500 3822100 3918400 1 1 1 1 1 1 1 1 1 1 1 570770000 0 570770000 20337 417 18693 105140 127403 127403 1 VGTAQLALVAR Unmodified 1097.6557 0.65569258 3127;3128 Q9UI10;Q9UI10-2;Q9UI10-3 EIF2B4 Translation initiation factor eIF-2B subunit delta no no 0 0 0 0 By MS/MS 1 0 1 1 51.087 50.816 2 0.0031459 16412 20211116_3439_TMUAki_TMT10x_S_F1 76.416 61.168 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20338 3127;3128 18694 105141 127404 127404 1 VGTFFSEVKPAGPTVEQQGEMAR Oxidation (M) 2480.2006 0.20057366 1229 P54886;P54886-2 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes no 0 0 1 1 By MS/MS By MS/MS 6.75 0.433 1 3 1 3 58.503 58.954 3;4 1.4586E-07 19483 20211116_3446_TMUAki_TMT10x_S_F7 95.206 86.605 14690000 24417000 121520 23492000 17305000 22757000 15075000 22389000 21282000 20210000 20347000 13678000 22780000 1244600 24020000 16536000 23220000 15600000 22717000 21346000 19828000 19657000 5 5 2 5 5 5 5 5 5 5 5 6695300 10671000 54556 9720400 9043900 14146000 8066800 9093200 8764400 8212400 8656800 6233600 9953800 538730 10050000 8644000 14024000 8255200 9474000 8881900 8056900 8354200 2 2 1 2 2 2 2 2 2 2 2 7995100 13746000 66965 13772000 8260700 8611100 7008500 13296000 12518000 11998000 11691000 7444500 12826000 705820 13970000 7891800 9196000 7345000 13243000 12465000 11771000 11303000 3 3 1 3 3 3 3 3 3 3 3 2586400000 883510000 1702800000 20339 1229 18695 105142;105143;105144;105145 127405;127406;127407;127408;127409 127408 1649 5 VGTGEPCCDWVGDEGAGHFVK Unmodified 2275.9627 0.96265158 1170 P52209;P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 By MS/MS By MS/MS 4 1 1 2 3 4 5 5 55.27 55.293 3;4 7.8757E-14 18231 20211116_3430_TMUAki_TMT10x_P_F3 123 114.29 82790000 141500000 795520 169770000 123240000 118430000 104320000 58231000 49350000 63670000 99426000 77088000 132140000 7803900 170430000 117710000 122460000 105110000 62406000 54387000 61959000 94362000 19 19 11 19 19 19 19 19 19 19 19 49335000 78333000 660000 97637000 89525000 95681000 80317000 34760000 28793000 37081000 57018000 45939000 73166000 5025200 98213000 85634000 96225000 80355000 38485000 32548000 36119000 54129000 11 11 6 11 11 11 11 11 11 11 11 33454000 63169000 135510 72133000 33712000 22746000 24007000 23472000 20557000 26589000 42408000 31149000 58977000 2778700 72216000 32081000 26235000 24752000 23921000 21839000 25840000 40233000 8 8 5 8 8 8 8 8 8 8 8 15133000000 8335300000 6797300000 20340 1170 18696 105146;105147;105148;105149;105150;105151;105152;105153;105154;105155 127410;127411;127412;127413;127414;127415;127416;127417;127418;127419;127420;127421;127422;127423;127424;127425;127426;127427;127428 127411 19 VGTSFSIPVVSDVR Unmodified 1461.7827 0.78274359 2383 Q92979 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 1 3 67.031 67.306 2;3 1.4252E-29 22403 20211116_3435_TMUAki_TMT10x_P_F7 212.27 154.68 9545300 16152000 36566 15259000 11491000 14680000 11169000 10990000 10109000 10544000 12466000 8887900 15068000 851680 15622000 11013000 14908000 11313000 11347000 10414000 10316000 11953000 2 2 1 2 2 2 2 2 2 2 2 5013500 8018400 36566 8190100 5769300 10041000 6212600 5642800 5169200 5542600 6565700 4668300 7482600 460320 8370800 5545300 10016000 6246300 5956200 5354000 5417300 6290500 1 1 1 1 1 1 1 1 1 1 1 4531900 8133700 0 7069400 5722200 4639300 4956500 5347500 4939300 5001500 5900500 4219600 7585600 391370 7250800 5467400 4892000 5067100 5390900 5059800 4899000 5662300 1 1 0 1 1 1 1 1 1 1 1 2763300000 970400000 1792900000 20341 2383 18697 105156;105157;105158;105159 127429;127430;127431 127429 3 VGTVIGSNKLEQMPSKEDAIEHFMK 2 Oxidation (M) 2819.3834 0.38336541 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 2 2 By MS/MS 1 0 1 1 55.01 54.71 5 3.0106E-05 18006 20211116_3439_TMUAki_TMT10x_S_F1 65.753 54.442 1317200 2226200 0 2576700 1151000 1432300 1175800 2942100 3318500 2802600 2191200 1226400 2078600 90934 2586800 1103200 1563700 1257700 2911000 3242200 2742900 2148600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1317200 2226200 0 2576700 1151000 1432300 1175800 2942100 3318500 2802600 2191200 1226400 2078600 90934 2586800 1103200 1563700 1257700 2911000 3242200 2742900 2148600 1 1 0 1 1 1 1 1 1 1 1 475750000 0 475750000 20342 586 18698 105160 127432 127432 561;562 1 VGVASSEELAR Unmodified 1116.5775 0.57750184 441 O95721 SNAP29 Synaptosomal-associated protein 29 yes yes 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 34.991 35.084 2 2.8951E-07 11571 20211116_3441_TMUAki_TMT10x_S_F3 116.12 88.281 175670 294820 16642 330120 183340 183020 200620 168350 187740 172020 260490 163690 275230 30182 332080 177240 195200 202190 172020 194130 167860 249030 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 175670 294820 16642 330120 183340 183020 200620 168350 187740 172020 260490 163690 275230 30182 332080 177240 195200 202190 172020 194130 167860 249030 1 1 1 1 1 1 1 1 1 1 1 3039000 0 3039000 20343 441 18699 105161;105162 127433;127434 127434 2 VGVIGFPNVGK Unmodified 1085.6233 0.62332982 2698 Q9BVP2;Q9BVP2-2 GNL3 Guanine nucleotide-binding protein-like 3 yes no 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 65.436 65.085 2 2.5884E-11 23312 20211116_3441_TMUAki_TMT10x_S_F3 174.16 141.32 22655000 37797000 136760 35906000 28863000 37762000 26997000 26931000 25128000 27027000 29700000 21094000 35262000 2019100 36792000 27632000 38112000 27424000 27931000 25808000 26392000 28509000 5 5 3 5 5 5 5 5 5 5 5 13589000 22620000 136760 21623000 18741000 29149000 18036000 15442000 15353000 15982000 17169000 12653000 21103000 1326200 22242000 17961000 28923000 18249000 16409000 15801000 15587000 16506000 3 3 3 3 3 3 3 3 3 3 3 9066000 15177000 0 14283000 10121000 8613100 8960600 11488000 9775100 11045000 12531000 8440700 14158000 692840 14549000 9670900 9188800 9175000 11522000 10007000 10805000 12003000 2 2 0 2 2 2 2 2 2 2 2 1644200000 1077500000 566770000 20344 2698 18700 105163;105164;105165 127435;127436;127437;127438;127439 127438 5 VGVKPVGSDPDFQPELSGAGSR Unmodified 2198.0968 0.096760517 213 O43396 TXNL1 Thioredoxin-like protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 5.6 0.49 2 3 3 2 52.066 52.21 3;4 3.7007E-35 14394 20211116_3444_TMUAki_TMT10x_S_F5 186.7 178.31 34213000 59769000 256310 66273000 43313000 55159000 34832000 48030000 49324000 43114000 48971000 31855000 55796000 2901000 66984000 41313000 56718000 36224000 49046000 49532000 42310000 47251000 9 9 4 9 9 9 9 9 9 9 9 16434000 29560000 245090 31890000 31374000 42482000 24389000 22985000 24513000 21668000 24350000 15303000 27592000 1733200 32527000 29918000 42187000 25108000 24314000 24927000 21216000 23495000 5 5 2 5 5 5 5 5 5 5 5 17779000 30209000 11215 34383000 11938000 12677000 10443000 25045000 24810000 21446000 24621000 16552000 28204000 1167900 34457000 11395000 14531000 11115000 24732000 24605000 21093000 23757000 4 4 2 4 4 4 4 4 4 4 4 3937800000 2315700000 1622200000 20345 213 18701 105166;105167;105168;105169;105170 127440;127441;127442;127443;127444;127445;127446;127447;127448 127445 9 VGVLTVSDSCFR Unmodified 1338.6602 0.66018561 2913 Q9NQX3;Q9NQX3-2 GPHN Gephyrin;Molybdopterin adenylyltransferase;Molybdopterin molybdenumtransferase yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 56.347 56.976 2 6.0494E-15 18113 20211116_3435_TMUAki_TMT10x_P_F7 183.95 91.753 8741000 14000000 75074 15822000 12159000 13500000 9522300 9766700 8942500 9140000 11036000 8139300 13071000 842530 15977000 11597000 13812000 9778800 10100000 9197100 8952400 10581000 2 2 2 2 2 2 2 2 2 2 2 4859800 7722800 46607 8345700 8316300 10272000 6292300 5209600 4781100 5139000 6339800 4525300 7208600 494760 8498800 7926000 10232000 6441600 5550100 4985400 5021900 6067600 1 1 1 1 1 1 1 1 1 1 1 3881200 6277400 28467 7476100 3842700 3227600 3230000 4557100 4161400 4001100 4695900 3614000 5862000 347770 7478600 3670900 3580000 3337200 4549600 4211700 3930600 4513400 1 1 1 1 1 1 1 1 1 1 1 1532600000 943380000 589190000 20346 2913 18702 105171;105172;105173 127449;127450;127451 127450 3 VGVNGFGR Unmodified 804.42424 0.42423608 489 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes yes 0 0 0 0 By MS/MS By MS/MS 5.3 2.45 2 1 1 2 2 2 5 5 34.81 34.986 2 0.00041595 8760 20211116_3428_TMUAki_TMT10x_P_F1 143.02 107.82 24426000 39383000 54930 40338000 29601000 28951000 24556000 23028000 25405000 21825000 28955000 22742000 36752000 1886500 40914000 28242000 30063000 25199000 23676000 25935000 21365000 27822000 13 13 1 13 13 13 13 13 13 13 13 10693000 16367000 0 16370000 17180000 18074000 11209000 9462600 10788000 8954900 11682000 9954800 15272000 843430 16726000 16314000 18114000 11669000 10040000 11025000 8766700 11241000 5 5 0 5 5 5 5 5 5 5 5 13734000 23016000 54930 23967000 12421000 10877000 13347000 13565000 14618000 12870000 17274000 12787000 21480000 1043100 24188000 11928000 11949000 13530000 13636000 14909000 12599000 16581000 8 8 1 8 8 8 8 8 8 8 8 6946000000 4057500000 2888600000 20347 489 18703 105174;105175;105176;105177;105178;105179;105180;105181;105182;105183 127452;127453;127454;127455;127456;127457;127458;127459;127460;127461;127462;127463;127464;127465 127452 14 VGVTVAQTTMEPHLLEACVR Oxidation (M) 2226.1137 0.11367291 1065 P47897;P47897-2 QARS Glutamine--tRNA ligase yes no 0 0 1 0 By MS/MS 6 0 1 1 52.909 53.029 3 8.6238E-07 15002 20211116_3445_TMUAki_TMT10x_S_F6 90.22 77.665 836120 1468100 60985 1590900 886630 1054400 829200 1540800 1472000 1460000 1380600 778960 1370400 126860 1606300 852390 1118200 864000 1539600 1466200 1429200 1334600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 836120 1468100 60985 1590900 886630 1054400 829200 1540800 1472000 1460000 1380600 778960 1370400 126860 1606300 852390 1118200 864000 1539600 1466200 1429200 1334600 1 1 1 1 1 1 1 1 1 1 1 480630000 0 480630000 20348 1065 18704 105184 127466 127466 1387 1 VGWEQLLTTIAR Unmodified 1385.7667 0.76669959 235;644 O43707;O43707-2;O43707-3;P12814;P12814-2;P12814-3;P12814-4 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 no no 0 0 0 0 By MS/MS By MS/MS 3.17 2.27 1 2 2 1 4 2 79.703 79.677 2 6.3065E-20 27608 20211116_3429_TMUAki_TMT10x_P_F2 234.9 202.01 44280000 70064000 316430 72017000 48497000 53454000 54609000 21236000 19403000 26828000 46817000 41229000 65384000 3711100 73053000 46654000 54876000 53983000 23385000 22253000 25971000 44314000 6 6 3 6 6 6 6 6 6 6 6 30597000 45806000 316430 48362000 30941000 42250000 37169000 14638000 13961000 19044000 31530000 28489000 42751000 2626100 49065000 29830000 42798000 36658000 16408000 15841000 18418000 29872000 4 4 3 4 4 4 4 4 4 4 4 13683000 24258000 0 23654000 17556000 11203000 17440000 6598700 5442900 7783600 15287000 12739000 22633000 1085000 23988000 16824000 12078000 17324000 6976900 6411500 7553000 14442000 2 2 0 2 2 2 2 2 2 2 2 7677700000 4896400000 2781300000 20349 235;644 18705 105185;105186;105187;105188;105189;105190 127467;127468;127469;127470;127471;127472 127467 6 VGWSTMQASLDLGTDK Oxidation (M) 1723.8087 0.80870034 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 1 0 By MS/MS By MS/MS 5.67 0.471 2 4 3 3 62.587 62.638 2;3 1.9004E-09 19071 20211116_3445_TMUAki_TMT10x_S_F6 116.71 91.496 28483000 43724000 292740 53128000 35746000 42625000 30284000 23805000 22630000 23005000 33445000 26522000 40834000 2599300 53378000 34147000 43649000 30767000 25129000 23741000 22501000 31928000 4 4 1 4 4 4 4 4 4 4 4 21483000 32819000 292740 39065000 29915000 37917000 24369000 18597000 17945000 17484000 25582000 20004000 30647000 2085300 39394000 28556000 38264000 24810000 19850000 18809000 17122000 24442000 3 3 1 3 3 3 3 3 3 3 3 7000100 10905000 0 14064000 5831600 4708600 5915300 5207700 4684600 5521400 7863100 6517400 10187000 513930 13984000 5590500 5385100 5957600 5279000 4932400 5379500 7486900 1 1 0 1 1 1 1 1 1 1 1 2339200000 1671300000 667850000 20350 2334 18706 105191;105192;105193;105194;105195;105196 127473;127474;127475;127476;127477;127478;127479 127479 2684 7 VGWSTMQASLDLGTDK Unmodified 1707.8138 0.81378572 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 By MS/MS By MS/MS 6.6 0.49 2 3 2 3 74.05 74.088 2;3 3.2708E-52 25764 20211116_3446_TMUAki_TMT10x_S_F7 261.41 228.18 26004000 38552000 206910 52918000 22210000 19523000 25299000 11718000 10787000 13147000 23856000 24212000 36027000 2117700 52471000 21375000 21773000 25051000 12351000 12073000 12781000 22609000 6 6 4 6 6 6 6 6 6 6 6 7551000 11461000 175440 13815000 7611500 10240000 8537000 4769200 4701700 5447300 7933800 7032100 10703000 790380 13874000 7332100 10530000 8492300 5145400 5065700 5292200 7553400 2 2 2 2 2 2 2 2 2 2 2 18453000 27091000 31476 39103000 14599000 9282500 16762000 6949100 6085300 7699700 15922000 17180000 25324000 1327300 38597000 14043000 11243000 16559000 7205600 7007000 7489000 15055000 4 4 2 4 4 4 4 4 4 4 4 2598000000 368370000 2229600000 20351 2334 18706 105197;105198;105199;105200;105201 127480;127481;127482;127483;127484;127485;127486 127484 7 VGWSTMQASLDLGTDKFGFGFGGTGKK Oxidation (M) 2807.3589 0.35886522 2334 Q92499;Q92499-2;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 1 2 By MS/MS By MS/MS 3.6 0.49 2 3 4 1 73.868 73.798 4;5 3.8665E-18 24053 20211116_3431_TMUAki_TMT10x_P_F4 136.53 128.13 130190000 233460000 1124800 180640000 165260000 208850000 141170000 74787000 63171000 82911000 144230000 121220000 217640000 11461000 188440000 157870000 208010000 142040000 83047000 70556000 80641000 136630000 9 9 7 9 9 9 9 9 9 9 9 100230000 174330000 872400 141620000 108190000 179200000 106430000 57317000 51405000 65148000 107010000 93328000 162550000 8363100 147340000 103690000 177500000 106340000 64661000 56676000 63304000 101510000 7 7 5 7 7 7 7 7 7 7 7 29951000 59122000 252390 39028000 57066000 29649000 34743000 17470000 11767000 17763000 37219000 27889000 55092000 3098100 41094000 54172000 30509000 35697000 18386000 13879000 17336000 35116000 2 2 2 2 2 2 2 2 2 2 2 9681300000 6888000000 2793300000 20352 2334 18707 105202;105203;105204;105205;105206 127487;127488;127489;127490;127491;127492;127493;127494;127495 127493 2684 9 VGYELKDEIER Unmodified 1349.6827 0.68269519 2317 Q8WWY3;Q8WWY3-2;Q8WWY3-4;Q8WWY3-3 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 49.686 49.594 3 5.458E-05 14665 20211116_3442_TMUAki_TMT10x_S_F4 94.688 62.529 7655800 11164000 28178 13271000 12265000 12531000 8574100 8615000 9189400 7961100 9735900 7128500 10425000 724970 13378000 11669000 12724000 8909100 8937300 9341100 7802100 9375000 3 3 2 3 3 3 3 3 3 3 3 5388900 7301200 20573 8690100 9885100 10446000 6222500 5737700 6276100 5135700 6534700 5017700 6818000 528370 8793500 9387400 10428000 6504900 6053300 6391700 5040600 6295800 2 2 1 2 2 2 2 2 2 2 2 2266900 3863200 7604 4580600 2379500 2085400 2351600 2877300 2913300 2825300 3201200 2110700 3607400 196600 4585000 2281300 2296200 2404200 2883900 2949400 2761500 3079200 1 1 1 1 1 1 1 1 1 1 1 548830000 394500000 154330000 20353 2317 18708 105207;105208;105209;105210 127496;127497;127498;127499 127499 4 VGYERDFLR Unmodified 1153.588 0.58800695 414 O95232 LUC7L3 Luc7-like protein 3 yes yes 0 0 0 1 By MS/MS 5 1 1 1 2 40.488 40.652 3 0.049129 11100 20211116_3442_TMUAki_TMT10x_S_F4 55.249 31.159 923650 1383800 0 1643300 953640 672720 812790 1161200 1098800 1035000 1225600 860000 1292200 75939 1643600 910780 756170 840670 1152200 1109800 1016000 1178400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 923650 1383800 0 1643300 953640 672720 812790 1161200 1098800 1035000 1225600 860000 1292200 75939 1643600 910780 756170 840670 1152200 1109800 1016000 1178400 1 1 0 1 1 1 1 1 1 1 1 38318000 0 38318000 20354 414 18709 105211;105212 127500;127501 127500 2 VGYTPDWIFLLR Unmodified 1478.7922 0.79218606 1471 Q00610;Q00610-2;P53675;P53675-2 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 0 By MS/MS 3 0 1 1 80.631 80.593 2 0.0041578 29489 20211116_3441_TMUAki_TMT10x_S_F3 72.006 44.908 2345400 4188800 22189 4260000 3392100 2355800 3444400 1623900 1418400 1969900 3092400 2183900 3908900 229790 4312400 3255200 2500900 3428400 1698400 1591000 1909600 2931300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2345400 4188800 22189 4260000 3392100 2355800 3444400 1623900 1418400 1969900 3092400 2183900 3908900 229790 4312400 3255200 2500900 3428400 1698400 1591000 1909600 2931300 1 1 1 1 1 1 1 1 1 1 1 330700000 0 330700000 20355 1471 18710 105213 127502 127502 1 VGYYVNNEYTETELRENPPVKPDFSK Unmodified 3087.4825 0.48254541 3233 Q9Y294 ASF1A Histone chaperone ASF1A yes yes 0 0 0 2 By MS/MS By MS/MS 6.5 0.5 2 2 1 3 60.421 60.685 4;5 1.3177E-23 20179 20211116_3446_TMUAki_TMT10x_S_F7 154.88 144.64 12982000 21951000 114070 24951000 12036000 23961000 12844000 15723000 11305000 14819000 16680000 12088000 20494000 1131000 25228000 11566000 24286000 12938000 16375000 11759000 14510000 15924000 3 3 2 3 3 3 3 3 3 3 3 6877400 11590000 79104 12023000 7771400 15084000 8786100 7945800 7895900 8043500 9093600 6404200 10816000 656430 12281000 7481900 15017000 8831500 8441900 8114200 7851600 8735200 1 1 1 1 1 1 1 1 1 1 1 6104700 10361000 34963 12928000 4264800 8877100 4057800 7777500 3408900 6775700 7586600 5684000 9677500 474580 12947000 4083700 9268600 4106700 7933200 3644600 6658800 7189200 2 2 1 2 2 2 2 2 2 2 2 3097100000 953560000 2143600000 20356 3233 18711 105214;105215;105216;105217 127503;127504;127505 127505 3 VHAAVQPGSLDSESGIFACAFDQSESR Unmodified 2864.3035 0.30353518 228 O43660;O43660-2 PLRG1 Pleiotropic regulator 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 65.685 65.664 3 1.623E-14 21285 20211116_3442_TMUAki_TMT10x_S_F4 116.55 112.28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20357 228 18712 105218;105219 127506;127507 127507 2 VHACGVNPVETYIR Unmodified 1613.7984 0.79841043 1547 Q08257;Q08257-3 CRYZ Quinone oxidoreductase yes no 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 42.236 42.482 3 4.1357E-14 12428 20211116_3435_TMUAki_TMT10x_P_F7 149.69 137.78 10113000 16774000 152320 19167000 17105000 17738000 11429000 15556000 16459000 13235000 16791000 9417100 15661000 853350 19364000 16266000 18110000 12046000 15857000 16536000 13021000 16187000 14 14 11 14 14 14 14 14 14 14 14 4976700 7870400 37917 8735400 12685000 13397000 7270600 7893300 8777300 6983500 8399200 4633800 7347100 360710 8920100 12027000 13237000 7704600 8275900 8850000 6857900 8114100 4 4 2 4 4 4 4 4 4 4 4 5136300 8903800 114400 10432000 4419500 4341000 4158800 7662700 7681600 6251200 8391400 4783300 8313900 492640 10443000 4238000 4872700 4341100 7581100 7685700 6163400 8072900 10 10 9 10 10 10 10 10 10 10 10 1404600000 931250000 473320000 20358 1547 18713 105220;105221;105222;105223;105224;105225 127508;127509;127510;127511;127512;127513;127514;127515;127516;127517;127518;127519;127520;127521 127511 14 VHAENGELVAEGAK Unmodified 1422.7103 0.71030693 2617 Q9BPU6 DPYSL5 Dihydropyrimidinase-related protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 34.889 34.657 3 3.8085E-07 9383 20211116_3429_TMUAki_TMT10x_P_F2 119.32 92.717 894720 1445000 3705.7 1511700 1500300 1311000 1097900 781900 978920 760850 1151300 833100 1348600 85632 1534500 1428700 1336000 1131000 821050 1007200 743950 1105300 2 2 1 2 2 2 2 2 2 2 2 493760 773090 3705.7 824500 1099500 961320 623950 447180 528940 415260 630350 459770 721560 52873 839540 1042500 959330 654830 479650 545860 406880 604930 1 1 1 1 1 1 1 1 1 1 1 400960 671910 0 687220 400880 349660 473950 334720 449990 345590 520940 373330 627020 32759 694950 386190 376700 476180 341400 461350 337070 500340 1 1 0 1 1 1 1 1 1 1 1 239650000 131740000 107910000 20359 2617 18714 105226;105227 127522;127523 127522 2 VHAIPLR Unmodified 804.49701 0.49700709 1376;1377 P62879;P16520;P16520-2;P62873;P62873-2 GNB2;GNB3;GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 no no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 31.874 31.89 2 0.077188 8693 20211116_3439_TMUAki_TMT10x_S_F1 59.564 32.502 1645800 2667100 16927 3017300 2398100 1879900 1944000 1101600 896910 1157700 1880500 1532500 2490000 161230 3036400 2289000 1967700 1963200 1161000 993170 1128400 1783600 2 2 1 2 2 2 2 2 2 2 2 745980 1139800 16927 1303200 1312000 1158100 885450 486600 395950 463990 825780 694700 1064100 85548 1315800 1248300 1173600 905300 527950 439480 454090 783290 1 1 1 1 1 1 1 1 1 1 1 899830 1527400 0 1714100 1086200 721800 1058600 614960 500960 693750 1054700 837820 1425900 75685 1720600 1040700 794130 1057900 633000 553690 674300 1000300 1 1 0 1 1 1 1 1 1 1 1 50025000 30640000 19385000 20360 1377;1376 18715 105228;105229 127524 127524 1 VHCCLYFISPTGHSLRPLDLEFMK Unmodified 2919.4234 0.4233965 3111 Q9UH03;Q9UH03-2 SEPT3 Neuronal-specific septin-3 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 66.408 66.021 5 0.0085089 23804 20211116_3441_TMUAki_TMT10x_S_F3 46.027 3.4142 4348800 7919500 52973 6701300 5139100 7080100 5648700 5458900 4636600 5921700 5604300 4049300 7385200 382680 6928100 4941200 7152900 5671800 5645900 4795600 5764400 5376300 2 2 1 2 2 2 2 2 2 2 2 2386900 3937200 52973 3525600 2499400 4534500 2740100 2812500 2442600 3102600 3017200 2222800 3672300 248840 3640800 2405800 4518500 2757600 2955100 2518300 3018200 2892800 1 1 1 1 1 1 1 1 1 1 1 1961900 3982300 0 3175700 2639700 2545600 2908600 2646500 2194000 2819100 2587100 1826400 3712900 133850 3287300 2535300 2634400 2914200 2690800 2277200 2746200 2483500 1 1 0 1 1 1 1 1 1 1 1 1778600000 477570000 1301000000 20361 3111 18716 105230;105231 127525;127526 127526 2 VHCLNTLFSR Unmodified 1245.6288 0.6288259 810 P26196 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 45.291 45.253 3 6.8784E-07 15261 20211116_3441_TMUAki_TMT10x_S_F3 153.1 128.81 1937200 3562500 59155 3892700 2766000 2741400 2149000 3007800 2983400 2579100 3254300 1804100 3325400 220550 3930700 2639800 2869800 2237900 3031800 3008200 2536500 3131000 3 3 1 3 3 3 3 3 3 3 3 549640 924730 0 1005900 1214200 1407500 901180 801110 835180 776980 898900 511720 863180 49664 1026500 1156000 1395500 928430 844390 854800 759830 865170 1 1 0 1 1 1 1 1 1 1 1 1387600 2637800 59155 2886800 1551800 1333900 1247800 2206700 2148200 1802100 2355400 1292400 2462300 170890 2904200 1483800 1474300 1309500 2187400 2153400 1776700 2265800 2 2 1 2 2 2 2 2 2 2 2 505650000 159160000 346490000 20362 810 18717 105232;105233;105234;105235 127527;127528;127529;127530 127529 4 VHDLALR Unmodified 822.47119 0.47118627 2486 Q9Y383;Q96HJ9-2;Q9Y383-3;Q9Y383-2 LUC7L2 Putative RNA-binding protein Luc7-like 2 yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 32.554 32.537 3 0.00062711 7409 20211116_3431_TMUAki_TMT10x_P_F4 134.66 83.091 1213800 1704200 1334.5 1701800 1342800 1628300 1089900 746620 884260 870070 1031500 1130100 1590200 102820 1735200 1281200 1643600 1112400 807300 913800 844670 990500 2 2 1 2 2 2 2 2 2 2 2 1213800 1704200 1334.5 1701800 1342800 1628300 1089900 746620 884260 870070 1031500 1130100 1590200 102820 1735200 1281200 1643600 1112400 807300 913800 844670 990500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 115340000 115340000 0 20363 2486 18718 105236;105237 127531;127532 127531 2 VHELNEEIGK Unmodified 1166.5932 0.5931519 2486;2898 Q9Y383;Q96HJ9-2;Q9Y383-3;Q9Y383-2;Q9NQ29;Q9NQ29-2;Q9NQ29-3 LUC7L2;LUC7L Putative RNA-binding protein Luc7-like 2;Putative RNA-binding protein Luc7-like 1 no no 0 0 0 0 By MS/MS By MS/MS 3.5 1.12 1 1 1 1 1 3 37.648 37.607 3 8.0194E-05 9569 20211116_3431_TMUAki_TMT10x_P_F4 117.52 66.913 2328900 3592900 6930.5 3563500 4092600 3553000 2577400 2749600 2981900 2423100 3250400 2168500 3352500 224250 3637300 3886500 3602200 2706100 2826300 3025400 2380000 3127200 3 3 3 3 3 3 3 3 3 3 3 1458600 2113500 3516.3 2088800 3118000 2720200 1599900 1589600 1731500 1437100 1877000 1358200 1972000 147450 2142100 2951700 2706800 1706300 1668700 1760900 1409800 1806200 1 1 1 1 1 1 1 1 1 1 1 870290 1479400 3414.1 1474700 974660 832850 977500 1160000 1250400 986030 1373300 810350 1380500 76797 1495200 934830 895390 999820 1157700 1264500 970170 1321000 2 2 2 2 2 2 2 2 2 2 2 170370000 109490000 60877000 20364 2486;2898 18719 105238;105239;105240;105241 127533;127534;127535;127536 127533 4 VHFEESSKLEDLLR Unmodified 1700.8733 0.87334951 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 1 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 59.381 59.446 4 7.2774E-30 18265 20211116_3431_TMUAki_TMT10x_P_F4 213.52 190.04 13718000 21919000 258190 23242000 14549000 21538000 14952000 15700000 17066000 18617000 18696000 12774000 20458000 1350300 23591000 13974000 21916000 15211000 16344000 17327000 18062000 17985000 6 6 5 6 6 6 6 6 6 6 6 6050200 9413300 59258 9174500 8311100 13044000 7713900 6828800 7106100 7844900 7919300 5633500 8782700 549200 9434300 7955100 12910000 7836900 7287100 7284700 7619900 7614300 3 3 2 3 3 3 3 3 3 3 3 7667400 12506000 198930 14067000 6238300 8493700 7238300 8870800 9960300 10772000 10776000 7140600 11675000 801060 14157000 6018700 9005100 7374100 9057100 10043000 10442000 10370000 3 3 3 3 3 3 3 3 3 3 3 5093100000 2592100000 2501000000 20365 647 18720 105242;105243;105244;105245;105246;105247 127537;127538;127539;127540;127541;127542 127537 6 VHFTAER Unmodified 858.4348 0.43480077 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 29.237 29.224 3 0.045052 6062 20211116_3431_TMUAki_TMT10x_P_F4 49.65 23.047 115940 212580 4357.3 166010 195570 360260 366150 1326800 1475800 645280 377300 107990 198190 14789 175550 192070 376750 396840 1279800 1413900 658290 397970 1 1 1 1 1 1 1 1 1 1 1 115940 212580 4357.3 166010 195570 360260 366150 1326800 1475800 645280 377300 107990 198190 14789 175550 192070 376750 396840 1279800 1413900 658290 397970 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14303000 14303000 0 20366 2048 18721 105248;105249 127543 127543 1 VHGLALQISENLFSNK Unmodified 1768.9472 0.94718315 2018 Q6UB35;Q6UB35-2 MTHFD1L Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 72.511 72.3 3 1.5941E-10 24590 20211116_3429_TMUAki_TMT10x_P_F2 121.95 106.57 15529000 26995000 1048800 25812000 19565000 26563000 21438000 20162000 18088000 19516000 22447000 14467000 25184000 2321400 26428000 18870000 26870000 21543000 20803000 18703000 19087000 21519000 4 4 4 4 4 4 4 4 4 4 4 7447100 12370000 475050 12587000 8213400 16048000 10206000 10048000 8907600 9701900 10742000 6937500 11543000 1070900 12877000 7954300 16000000 10208000 10509000 9183900 9489600 10306000 2 2 2 2 2 2 2 2 2 2 2 8081500 14625000 573750 13225000 11351000 10515000 11231000 10113000 9180700 9813800 11705000 7529000 13641000 1250500 13550000 10916000 10870000 11335000 10294000 9519000 9597000 11213000 2 2 2 2 2 2 2 2 2 2 2 1422900000 958610000 464310000 20367 2018 18722 105250;105251;105252;105253 127544;127545;127546;127547 127544 4 VHGPGIQSGTTNKPNKFTVETR Unmodified 2367.2295 0.22950602 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 2 By MS/MS By MS/MS 3.33 1.25 1 1 1 1 2 35.888 35.788 5 3.895E-14 11320 20211116_3441_TMUAki_TMT10x_S_F3 130.71 115.79 1177100 2003700 18680 2486700 2073700 2123800 1130300 1688000 2122900 1568900 1969600 1096100 1871500 123290 2497300 1965500 2176100 1226500 1734700 2110800 1537200 1904800 3 3 2 3 3 3 3 3 3 3 3 390870 668340 11227 867140 1395400 1409300 458290 566670 676530 599110 672920 364020 624370 56937 878690 1315100 1383300 520610 619650 678570 583780 649250 1 1 1 1 1 1 1 1 1 1 1 786210 1335400 7453.2 1619500 678300 714470 671970 1121400 1446300 969780 1296700 732060 1247100 66357 1618600 650400 792820 705910 1115100 1432200 953380 1255500 2 2 1 2 2 2 2 2 2 2 2 257480000 131370000 126110000 20368 755 18723 105254;105255;105256 127548;127549;127550 127549 3 VHIDIGADGR Unmodified 1051.5411 0.54105675 893 P31942;P31942-2;P31942-3;P31942-4;P31942-5;P31942-6 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes no 0 0 0 0 By MS/MS By MS/MS 4.04 1.95 3 4 3 9 3 2 2 2 11 17 32.911 32.995 2;3 4.1323E-09 10489 20211116_3439_TMUAki_TMT10x_S_F1 132.39 82.973 10148000 16685000 204470 17738000 14438000 13699000 11427000 12956000 12768000 12024000 13894000 9450500 15573000 1060300 17961000 13780000 14188000 11790000 13182000 12970000 11781000 13368000 30 30 18 30 30 30 30 30 30 30 30 3962200 6362100 46629 6636400 7635800 8142100 4883600 4935800 4783200 4542500 5189000 3689600 5937600 419130 6773300 7255100 8129700 5094500 5168500 4884900 4452700 4993100 11 11 8 11 11 11 11 11 11 11 11 6186100 10323000 157840 11102000 6802600 5557200 6543600 8020100 7984500 7481300 8704900 5761000 9635700 641210 11188000 6524900 6058700 6695600 8013900 8085400 7328800 8375000 19 19 10 19 19 19 19 19 19 19 19 4260000000 2155100000 2104900000 20369 893 18724 105257;105258;105259;105260;105261;105262;105263;105264;105265;105266;105267;105268;105269;105270;105271;105272;105273;105274;105275;105276;105277;105278;105279;105280;105281;105282;105283;105284 127551;127552;127553;127554;127555;127556;127557;127558;127559;127560;127561;127562;127563;127564;127565;127566;127567;127568;127569;127570;127571;127572;127573;127574;127575;127576;127577;127578;127579;127580;127581;127582;127583;127584;127585;127586 127563 36 VHIEIGPDGR Unmodified 1091.5724 0.57235688 894;1181;1247 P52597;P31943;P55795 HNRNPF;HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 no no 0 0 0 0 By MS/MS By MS/MS 4.03 1.76 2 4 5 13 2 2 2 2 12 20 33.126 33.157 2;3 1.4696E-09 9179 20211116_3431_TMUAki_TMT10x_P_F4 186.76 172.86 33816000 51425000 320390 55106000 43445000 41538000 34596000 34613000 35709000 32735000 42687000 31487000 47999000 3110100 55755000 41446000 42998000 35589000 35485000 36527000 32048000 40962000 40 40 18 40 40 40 40 40 40 40 40 15268000 22403000 148680 23410000 24497000 25101000 16116000 13897000 14597000 13485000 17529000 14217000 20908000 1461400 23836000 23283000 25215000 16738000 14683000 15021000 13187000 16819000 17 17 10 17 17 17 17 17 17 17 17 18548000 29022000 171700 31696000 18948000 16438000 18480000 20716000 21112000 19250000 25157000 17270000 27090000 1648700 31918000 18164000 17783000 18851000 20803000 21506000 18861000 24143000 23 23 8 23 23 23 23 23 23 23 23 13801000000 7689700000 6111700000 20370 1181;894;1247 18725 105285;105286;105287;105288;105289;105290;105291;105292;105293;105294;105295;105296;105297;105298;105299;105300;105301;105302;105303;105304;105305;105306;105307;105308;105309;105310;105311;105312;105313;105314;105315;105316 127587;127588;127589;127590;127591;127592;127593;127594;127595;127596;127597;127598;127599;127600;127601;127602;127603;127604;127605;127606;127607;127608;127609;127610;127611;127612;127613;127614;127615;127616;127617;127618;127619;127620;127621;127622;127623;127624;127625;127626;127627;127628;127629;127630 127594 44 VHIGQVIMSIR Oxidation (M) 1267.7071 0.70707622 827 P27635;Q96L21 RPL10;RPL10L 60S ribosomal protein L10;60S ribosomal protein L10-like yes no 0 0 1 0 By MS/MS By MS/MS 2.5 0.866 1 3 3 1 5 3 47.755 47.575 2;3 2.3007E-08 16037 20211116_3441_TMUAki_TMT10x_S_F3 143.73 116.48 2832800 4709300 10724 5154100 3842200 4213100 2719800 4439700 4200900 3885000 4320000 2637700 4395900 255850 5212600 3656300 4355200 2863400 4485900 4213100 3817100 4163700 5 5 4 5 5 5 5 5 5 5 5 1057400 1754400 2769.3 1811900 2300600 2778900 1473600 1667800 1507100 1502100 1574700 984530 1637200 104510 1858800 2185100 2746300 1539000 1746800 1534100 1473800 1517000 2 2 1 2 2 2 2 2 2 2 2 1775400 2954900 7954.6 3342300 1541500 1434200 1246300 2771900 2693800 2382900 2745300 1653200 2758700 151330 3353800 1471100 1608800 1324400 2739100 2679000 2343300 2646700 3 3 3 3 3 3 3 3 3 3 3 2467000000 1306600000 1160400000 20371 827 18726 105317;105318;105319;105320;105321;105322;105323;105324 127631;127632;127633;127634;127635;127636;127637 127636 998 7 VHIGQVIMSIR Unmodified 1251.7122 0.7121616 827 P27635;Q96L21 RPL10;RPL10L 60S ribosomal protein L10;60S ribosomal protein L10-like yes no 0 0 0 0 By MS/MS By MS/MS 4 0.756 2 3 2 4 3 53.714 53.714 2;3 5.0897E-16 15816 20211116_3431_TMUAki_TMT10x_P_F4 199.68 171.57 6629500 11139000 227080 12650000 9344900 10554000 8081800 7230200 6560500 6618300 8842500 6174500 10399000 799300 12767000 8942300 10806000 8216700 7500600 6821800 6489000 8459400 6 6 6 6 6 6 6 6 6 6 6 4060900 6566100 92757 7878200 6771100 8546400 5729100 4687500 4245100 4115300 5336900 3781800 6131800 461080 7954400 6471800 8578600 5819800 4943500 4422300 4042800 5114500 3 3 3 3 3 3 3 3 3 3 3 2568600 4572700 134320 4772300 2573800 2007300 2352700 2542800 2315400 2503000 3505600 2392700 4267600 338220 4813100 2470500 2227500 2396900 2557100 2399400 2446200 3344900 3 3 3 3 3 3 3 3 3 3 3 1986100000 1050300000 935740000 20372 827 18726 105325;105326;105327;105328;105329;105330;105331 127638;127639;127640;127641;127642;127643;127644 127639 7 VHILDTESFETTFGPK Unmodified 1819.8992 0.89922991 1664 Q13823 GNL2 Nucleolar GTP-binding protein 2 yes yes 0 0 0 0 By MS/MS 6 0 1 1 66.908 66.882 3 2.1569E-15 20386 20211116_3434_TMUAki_TMT10x_P_F6 138.87 127.43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20373 1664 18727 105332 127645 127645 1 VHILGSFQNIK Unmodified 1254.7085 0.70845643 2935 Q9NRX1 PNO1 RNA-binding protein PNO1 yes yes 0 0 0 0 By MS/MS By matching 3 0 2 1 1 53.997 53.72 3 0.00014346 17581 20211116_3430_TMUAki_TMT10x_P_F3 92.538 60.696 1847200 2714300 0 3325700 3610700 4400100 2487100 2591700 2436500 2137500 2754200 1719700 2535000 155910 3365700 3432500 4375600 2580000 2712800 2492200 2106300 2647000 1 1 0 1 1 1 1 1 1 1 1 1847200 2714300 0 3325700 3610700 4400100 2487100 2591700 2436500 2137500 2754200 1719700 2535000 155910 3365700 3432500 4375600 2580000 2712800 2492200 2106300 2647000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 277890000 169820000 108080000 20374 2935 18728 105333;105334 127646 127646 1 VHILYVGSMPLK Oxidation (M) 1371.7584 0.75844309 3268 Q9Y3B2 EXOSC1 Exosome complex component CSL4 yes yes 0 0 1 0 By MS/MS By MS/MS 3 0 2 1 1 52.949 52.575 3 0.00049032 17111 20211116_3430_TMUAki_TMT10x_P_F3 79.741 54.949 1843900 3225600 50700 3178300 1819800 1573600 1372700 2965900 2683600 2667900 2750800 1717200 3009600 199790 3221800 1736700 1733300 1456300 2936300 2675200 2617900 2651500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1843900 3225600 50700 3178300 1819800 1573600 1372700 2965900 2683600 2667900 2750800 1717200 3009600 199790 3221800 1736700 1733300 1456300 2936300 2675200 2617900 2651500 1 1 1 1 1 1 1 1 1 1 1 435020000 0 435020000 20375 3268 18729 105335;105336 127647;127648 127647 3242 2 VHIPNDDAQFDASHCDSDKGEFGGFGSVTGK Unmodified 3293.432 0.43198317 1854 Q16576;Q16576-2 RBBP7 Histone-binding protein RBBP7 yes no 0 0 0 1 By MS/MS By matching 6 0 2 1 1 56.145 56.221 5 2.3266E-06 15970 20211116_3434_TMUAki_TMT10x_P_F6 71.881 65.628 12931000 20976000 21131 21522000 16706000 28051000 16624000 14564000 13703000 14660000 14977000 12040000 19575000 1141500 22015000 16018000 27871000 16776000 15491000 14113000 14314000 14408000 2 2 1 2 2 2 2 2 2 2 2 12931000 20976000 21131 21522000 16706000 28051000 16624000 14564000 13703000 14660000 14977000 12040000 19575000 1141500 22015000 16018000 27871000 16776000 15491000 14113000 14314000 14408000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4917100000 2755300000 2161800000 20376 1854 18730 105337;105338 127649;127650 127650 2 VHKEDDGVPVICQVEHPAVTGNLQTQR Unmodified 3025.504 0.50396633 2724 Q9BY67;Q9BY67-2;Q9BY67-5;Q9BY67-4;Q9BY67-3 CADM1 Cell adhesion molecule 1 yes no 0 0 0 1 By matching By MS/MS 5.5 0.5 1 1 1 1 44.664 44.808 5 6.7993E-09 11794 20211116_3445_TMUAki_TMT10x_S_F6 94.96 76.557 660950 1143400 21637 1283600 564770 553420 503300 1033200 969650 842670 978090 615570 1067400 73614 1288700 541290 619610 528170 1020500 966340 830840 943270 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 660950 1143400 21637 1283600 564770 553420 503300 1033200 969650 842670 978090 615570 1067400 73614 1288700 541290 619610 528170 1020500 966340 830840 943270 1 1 1 1 1 1 1 1 1 1 1 386490000 181770000 204720000 20377 2724 18731 105339;105340 127651 127651 1 VHLFDIITQYR Unmodified 1403.7561 0.75613491 2521 Q96MW5 COG8 Conserved oligomeric Golgi complex subunit 8 yes yes 0 0 0 0 By MS/MS 3 0 1 1 70.617 70.204 3 1.0294E-06 25402 20211116_3441_TMUAki_TMT10x_S_F3 125.54 99.602 490950 833740 21682 859410 597820 528880 610940 581230 600170 544120 635840 457290 778070 62407 869990 574860 560350 618680 587200 612310 532950 612270 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 490950 833740 21682 859410 597820 528880 610940 581230 600170 544120 635840 457290 778070 62407 869990 574860 560350 618680 587200 612310 532950 612270 1 1 1 1 1 1 1 1 1 1 1 176670000 0 176670000 20378 2521 18732 105341 127652 127652 1 VHLFQYPCSK Unmodified 1277.6227 0.62267789 2861 Q9HC35;Q9HC35-2 EML4 Echinoderm microtubule-associated protein-like 4 yes no 0 0 0 0 By MS/MS 2 0 1 1 47.96 47.68 3 0.043933 14662 20211116_3429_TMUAki_TMT10x_P_F2 51.927 37.236 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20379 2861 18733 105342 127653 127653 1 VHLVGIDIFTGK Unmodified 1297.7394 0.73942221 1404 P63241;P63241-2;Q6IS14;Q9GZV4 EIF5A;EIF5AL1;EIF5A2 Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like;Eukaryotic translation initiation factor 5A-2 yes no 0 0 0 0 By MS/MS By MS/MS 3.24 1.89 6 19 28 2 1 2 3 5 52 14 64.853 64.83 2;3 8.3748E-24 21594 20211116_3428_TMUAki_TMT10x_P_F1 239.31 212.64 440610000 695200000 2749100 705350000 479210000 599070000 478530000 398990000 395430000 416010000 466830000 410250000 648730000 36445000 717260000 459430000 612360000 482860000 416270000 408450000 405600000 448130000 63 63 25 63 63 63 63 63 63 63 63 246270000 373070000 265240 367580000 264680000 410360000 261080000 212940000 219350000 222240000 247970000 229280000 348090000 18179000 376020000 253540000 410970000 263720000 226740000 225990000 216670000 238320000 51 51 17 51 51 51 51 51 51 51 51 194340000 322130000 2483900 337770000 214530000 188720000 217450000 186050000 176080000 193780000 218870000 180970000 300640000 18266000 341250000 205890000 201390000 219140000 189530000 182460000 188930000 209810000 12 12 8 12 12 12 12 12 12 12 12 123090000000 68275000000 54813000000 20380 1404 18734 105343;105344;105345;105346;105347;105348;105349;105350;105351;105352;105353;105354;105355;105356;105357;105358;105359;105360;105361;105362;105363;105364;105365;105366;105367;105368;105369;105370;105371;105372;105373;105374;105375;105376;105377;105378;105379;105380;105381;105382;105383;105384;105385;105386;105387;105388;105389;105390;105391;105392;105393;105394;105395;105396;105397;105398;105399;105400;105401;105402;105403;105404;105405;105406;105407;105408 127654;127655;127656;127657;127658;127659;127660;127661;127662;127663;127664;127665;127666;127667;127668;127669;127670;127671;127672;127673;127674;127675;127676;127677;127678;127679;127680;127681;127682;127683;127684;127685;127686;127687;127688;127689;127690;127691;127692;127693;127694;127695;127696;127697;127698;127699;127700;127701;127702;127703;127704;127705;127706;127707;127708;127709;127710;127711;127712;127713;127714;127715;127716;127717;127718;127719;127720;127721;127722;127723;127724;127725;127726;127727;127728;127729;127730;127731 127655 78 VHLVGIDIFTGKK Unmodified 1425.8344 0.83438523 1404 P63241;P63241-2;Q6IS14;Q9GZV4 EIF5A;EIF5AL1;EIF5A2 Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like;Eukaryotic translation initiation factor 5A-2 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 3 3 2 4 61.048 60.884 3;4 9.3631E-12 20536 20211116_3430_TMUAki_TMT10x_P_F3 147.87 139.76 23679000 42759000 612360 30108000 41642000 73501000 38689000 69307000 63509000 59634000 42439000 22052000 39851000 2783500 32258000 39891000 72107000 40166000 70389000 62775000 58640000 41591000 8 8 7 8 8 8 8 8 8 8 8 12340000 21376000 349530 15568000 26127000 52701000 25180000 38168000 35730000 32024000 21692000 11492000 19924000 1540000 16847000 25049000 51071000 25917000 39356000 35389000 31530000 21360000 4 4 3 4 4 4 4 4 4 4 4 11339000 21383000 262830 14541000 15515000 20800000 13509000 31139000 27779000 27610000 20746000 10560000 19927000 1243500 15411000 14842000 21036000 14249000 31033000 27386000 27111000 20231000 4 4 4 4 4 4 4 4 4 4 4 5800300000 2912700000 2887500000 20381 1404 18735 105409;105410;105411;105412;105413;105414 127732;127733;127734;127735;127736;127737;127738;127739;127740 127732 9 VHMFEAHSDYIR Oxidation (M) 1519.6878 0.68779734 936 P35606;P35606-2 COPB2 Coatomer subunit beta' yes no 0 0 1 0 By MS/MS By matching 4.67 0.471 1 2 2 1 32.743 32.787 4 0.00012399 7490 20211116_3431_TMUAki_TMT10x_P_F4 92.112 76.222 1490200 2354900 63178 2428200 2575900 3150300 1922100 1982200 1863000 1729100 2101000 1388000 2197700 197630 2482800 2457300 3138600 1982000 2066700 1906300 1699100 2019400 2 2 2 2 2 2 2 2 2 2 2 1490200 2354900 63178 2428200 2575900 3150300 1922100 1982200 1863000 1729100 2101000 1388000 2197700 197630 2482800 2457300 3138600 1982000 2066700 1906300 1699100 2019400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 116430000 112630000 3804000 20382 936 18736 105415;105416;105417 127741;127742 127741 1198 2 VHNDAQSFDYDHDAFLGAEEAK Unmodified 2478.0724 0.07239626 252 O43852;O43852-3;O43852-4;O43852-2;O43852-10;O43852-6;O43852-5;O43852-13;O43852-14;O43852-11;O43852-9;O43852-12;O43852-7;O43852-8 CALU Calumenin yes no 0 0 0 0 By MS/MS By MS/MS 3 1.35 2 2 3 2 2 6 5 51.112 51.058 3;4 2.0302E-55 15997 20211116_3429_TMUAki_TMT10x_P_F2 219.22 209.94 46619000 77835000 697100 90507000 60766000 69274000 46402000 43364000 49830000 46642000 54346000 43411000 72676000 4548100 91120000 57936000 71299000 47925000 45495000 50703000 45418000 52285000 17 17 12 17 17 17 17 17 17 17 17 24676000 41390000 331220 46663000 42309000 53076000 31645000 24896000 28252000 26055000 28370000 22978000 38641000 2547500 47327000 40317000 53042000 32552000 26770000 28894000 25399000 27364000 9 9 7 9 9 9 9 9 9 9 9 21942000 36445000 365880 43845000 18457000 16198000 14757000 18468000 21578000 20587000 25975000 20432000 34035000 2000600 43793000 17619000 18258000 15373000 18726000 21809000 20019000 24921000 8 8 5 8 8 8 8 8 8 8 8 10159000000 6486900000 3671700000 20383 252 18737 105418;105419;105420;105421;105422;105423;105424;105425;105426;105427;105428 127743;127744;127745;127746;127747;127748;127749;127750;127751;127752;127753;127754;127755;127756;127757;127758;127759 127746 17 VHPALNVSTR Unmodified 1092.604 0.60399136 1204 P53609;P53609-2 PGGT1B Geranylgeranyl transferase type-1 subunit beta yes no 0 0 0 0 By MS/MS 1 0 1 1 30.723 30.772 3 0.0022366 8260 20211116_3439_TMUAki_TMT10x_S_F1 74.944 49.006 172450 289400 0 314960 210290 164180 233210 165440 154280 167480 492340 160550 270140 12472 317260 202060 176580 232910 168210 172400 163490 464470 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 172450 289400 0 314960 210290 164180 233210 165440 154280 167480 492340 160550 270140 12472 317260 202060 176580 232910 168210 172400 163490 464470 1 1 0 1 1 1 1 1 1 1 1 7611500 0 7611500 20384 1204 18738 105429 127760 127760 1 VHPAVVIR Unmodified 889.54977 0.54977095 1369 P62829 RPL23 60S ribosomal protein L23 yes yes 0 0 0 0 By MS/MS By MS/MS 3.55 2.84 5 1 1 1 1 2 8 3 31.133 31.145 2;3 0.00016851 6409 20211116_3428_TMUAki_TMT10x_P_F1 153.15 116.05 2124100 3176100 56330 3084500 2293300 2270900 2090800 1700700 1648600 1688600 2465200 1978100 2963300 219360 3141000 2196500 2350800 2117700 1757600 1725500 1649700 2352800 5 5 4 5 5 5 5 5 5 5 5 941400 1268600 27567 1146800 1186100 1259800 846060 751030 645980 690830 1211800 876740 1183300 107170 1180200 1130400 1265000 869780 787470 686010 677180 1151400 2 2 2 2 2 2 2 2 2 2 2 1182700 1907400 28763 1937700 1107200 1011100 1244700 949670 1002600 997770 1253500 1101300 1779900 112190 1960800 1066100 1085800 1247900 970100 1039500 972490 1201400 3 3 2 3 3 3 3 3 3 3 3 2355500000 1050000000 1305500000 20385 1369 18739 105430;105431;105432;105433;105434;105435;105436;105437;105438;105439;105440 127761;127762;127763;127764;127765;127766;127767;127768;127769;127770 127761 10 VHPEIINENGNPSYK Unmodified 1709.8373 0.83729835 452 O95881 TXNDC12 Thioredoxin domain-containing protein 12 yes yes 0 0 0 0 By MS/MS 5 0 1 1 39.987 40.111 3 1.3866E-09 9616 20211116_3444_TMUAki_TMT10x_S_F5 123.38 100.15 1387600 2296500 0 2935100 1106500 1192700 1084200 2434900 3055300 2113400 2439500 1291700 2145300 78376 2923100 1058300 1350400 1162000 2403400 3000200 2077300 2372300 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1387600 2296500 0 2935100 1106500 1192700 1084200 2434900 3055300 2113400 2439500 1291700 2145300 78376 2923100 1058300 1350400 1162000 2403400 3000200 2077300 2372300 2 2 0 2 2 2 2 2 2 2 2 77485000 0 77485000 20386 452 18740 105441 127771;127772 127772 2 VHPVSTMIK Unmodified 1010.5583 0.55828672 462 P00338;P00338-3;P00338-4 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 36.792 36.762 3 0.0004008 8580 20211116_3428_TMUAki_TMT10x_P_F1 103.55 78.771 2979300 4630600 108050 5121300 3871300 3011400 2832800 2160900 2106000 2007500 3989300 2774800 4322700 360190 5158300 3692400 3178900 2905300 2235300 2241200 1966900 3790000 2 2 2 2 2 2 2 2 2 2 2 1303000 1748700 28855 1992800 2411600 1938000 1437800 827570 818720 768400 1796400 1213400 1632700 150450 2014900 2289600 1952800 1490200 895690 894690 752900 1702600 1 1 1 1 1 1 1 1 1 1 1 1676300 2881900 79190 3128500 1459700 1073400 1395000 1333300 1287300 1239100 2192900 1561400 2690000 209750 3143400 1402800 1226100 1415000 1339700 1346500 1214000 2087400 1 1 1 1 1 1 1 1 1 1 1 533550000 342310000 191240000 20387 462 18741 105442;105443 127773;127774 127773 2 VHQLYETIQR Unmodified 1285.6779 0.67788459 1647 Q13561;Q13561-3;Q13561-2 DCTN2 Dynactin subunit 2 yes no 0 0 0 0 By MS/MS 6.33 0.471 2 1 3 36.427 36.638 2;3 1.2214E-08 8284 20211116_3434_TMUAki_TMT10x_P_F6 131.52 106.59 1262000 1991200 26933 1984600 2133000 2252100 1542200 1041200 1108600 1020400 1475300 1175300 1858000 141930 2029100 2032000 2250600 1581800 1119100 1159800 997390 1411800 4 4 4 4 4 4 4 4 4 4 4 1262000 1991200 26933 1984600 2133000 2252100 1542200 1041200 1108600 1020400 1475300 1175300 1858000 141930 2029100 2032000 2250600 1581800 1119100 1159800 997390 1411800 4 4 4 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 47093000 47093000 0 20388 1647 18742 105444;105445;105446 127775;127776;127777;127778;127779 127776 5 VHSFPTLK Unmodified 927.5178 0.51780212 533 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 0 By MS/MS By MS/MS 2.8 2.64 2 2 1 2 3 41.112 41.015 3 0.00079517 11953 20211116_3429_TMUAki_TMT10x_P_F2 113.26 74.48 7936200 12235000 138290 13539000 14187000 11665000 8367600 7895700 8115700 6919000 10275000 7390400 11421000 862970 13692000 13464000 11915000 8784000 8188800 8343900 6797700 9844700 5 5 4 5 5 5 5 5 5 5 5 3951800 6215100 126890 6813700 10524000 8454200 4636800 4485900 4654800 3686100 5486900 3680500 5801600 537940 6933400 9950400 8422200 5011700 4737200 4764200 3633000 5267200 2 2 2 2 2 2 2 2 2 2 2 3984400 6019500 11402 6725500 3662700 3210900 3730800 3409900 3460800 3232800 4787800 3709900 5619400 325030 6758700 3513600 3492400 3772400 3451600 3579700 3164700 4577500 3 3 2 3 3 3 3 3 3 3 3 1439900000 1109700000 330170000 20389 533 18743 105447;105448;105449;105450;105451 127780;127781;127782;127783;127784;127785 127781 6 VHSPPASLVPR Unmodified 1158.6509 0.65094155 2663 Q9BTE3;Q9BTE3-2;Q9BTE3-3 MCMBP Mini-chromosome maintenance complex-binding protein yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 33.71 33.715 3 0.00018397 7402 20211116_3428_TMUAki_TMT10x_P_F1 89.561 68.113 696110 1102200 2539 1292900 1114100 1022500 833350 816220 834590 694810 1006700 648120 1029200 60553 1301500 1061000 1053700 860020 836650 855100 683590 965780 2 2 1 2 2 2 2 2 2 2 2 324110 501340 0 580080 715920 663550 435590 351990 343360 301700 447620 301730 468100 26978 587460 679060 663830 453640 372100 357040 296730 428570 1 1 0 1 1 1 1 1 1 1 1 372000 600870 2539 712810 398190 358910 397770 464230 491230 393110 559070 346390 561090 33575 713990 381950 389830 406390 464560 498060 386860 537210 1 1 1 1 1 1 1 1 1 1 1 82335000 43016000 39320000 20390 2663 18744 105452;105453 127786;127787 127786 2 VHSPSGALEECYVTEIDQDK Unmodified 2276.0267 0.026691621 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 55.331 55.101 3 4.3691E-42 18172 20211116_3439_TMUAki_TMT10x_S_F1 214.5 205.45 7201900 11673000 60128 15750000 6938900 6813900 5757500 4595300 4456300 5328900 7292300 6705800 10908000 613560 15646000 6625000 7442900 5861500 4806100 4691100 5174200 6946900 4 4 2 4 4 4 4 4 4 4 4 2848500 4234400 0 5865000 2879800 3884900 2383100 1503700 1277200 1903600 2501500 2652100 3957200 211800 5838500 2747200 4026300 2409000 1661000 1391200 1842700 2375200 1 1 0 1 1 1 1 1 1 1 1 4353300 7439000 60128 9884900 4059100 2929000 3374400 3091600 3179100 3425300 4790800 4053700 6950600 401770 9807500 3877800 3416500 3452600 3145100 3299900 3331600 4571700 3 3 2 3 3 3 3 3 3 3 3 1235200000 549380000 685800000 20391 755 18745 105454;105455;105456;105457 127788;127789;127790;127791;127792 127789 5 VHSPSGALEECYVTEIDQDKYAVR Unmodified 2765.2967 0.29665889 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 1 By MS/MS 4 0.816 1 1 1 3 55.962 56.006 4 2.1077E-11 18589 20211116_3430_TMUAki_TMT10x_P_F3 113.59 100.93 21408000 37801000 670090 35840000 30993000 48641000 30577000 19985000 18078000 22368000 27162000 19938000 35265000 2518200 36893000 29746000 48118000 30650000 21837000 19261000 21747000 25921000 6 6 5 6 6 6 6 6 6 6 6 21408000 37801000 670090 35840000 30993000 48641000 30577000 19985000 18078000 22368000 27162000 19938000 35265000 2518200 36893000 29746000 48118000 30650000 21837000 19261000 21747000 25921000 6 6 5 6 6 6 6 6 6 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3383700000 3383700000 0 20392 755 18746 105458;105459;105460 127793;127794;127795;127796;127797;127798 127794 6 VHTPSGAVEECYVSELDSDKHTIR Unmodified 2728.2763 0.2762578 1703 Q14315;Q14315-2 FLNC Filamin-C yes no 0 0 0 1 By MS/MS By MS/MS 3 0 2 1 1 47.715 47.529 5 2.359E-11 14972 20211116_3430_TMUAki_TMT10x_P_F3 112.45 99.522 2169100 3827700 20557 4661200 3245300 3809300 2450800 3281900 3352300 3264300 3436100 2019700 3574800 200080 4683600 3092100 3921300 2555400 3362900 3373900 3188800 3312100 3 3 2 3 3 3 3 3 3 3 3 729230 1250300 7806.2 1471300 1733100 2429000 1260100 1050200 1087000 1081500 1111300 679050 1167500 81794 1499700 1650400 2384500 1297600 1138300 1114200 1054900 1071300 1 1 1 1 1 1 1 1 1 1 1 1439900 2577400 12751 3189900 1512200 1380200 1190700 2231700 2265300 2182900 2324800 1340700 2407300 118280 3183900 1441700 1536800 1257900 2224600 2259600 2133900 2240800 2 2 1 2 2 2 2 2 2 2 2 373490000 246730000 126760000 20393 1703 18747 105461;105462 127799;127800;127801 127799 3 VHTVMTLEQQDMVCYTAQTLVR 2 Oxidation (M) 2654.2502 0.25024275 1575 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 2 0 By MS/MS By MS/MS 6 0.632 1 3 1 3 2 53.211 53.34 3;4 2.1479E-14 15151 20211116_3445_TMUAki_TMT10x_S_F6 132.6 119.66 5430200 9946200 10799 8524600 7350100 11441000 6347100 9997500 9415800 8538100 8431300 5055900 9275500 456890 8840600 7021100 11443000 6585600 10194000 9409800 8398900 8163800 5 5 3 5 5 5 5 5 5 5 5 4369100 7766100 8587.9 6637000 6046500 10017000 5303900 7355700 6932500 6191600 6327300 4067900 7242400 369750 6901100 5778000 9936400 5469300 7578200 6959900 6095000 6122500 3 3 2 3 3 3 3 3 3 3 3 1061100 2180100 2210.6 1887600 1303500 1423500 1043100 2641800 2483300 2346500 2104000 987940 2033100 87135 1939400 1243100 1506200 1116300 2615700 2449900 2303900 2041400 2 2 1 2 2 2 2 2 2 2 2 4642000000 3330500000 1311500000 20394 1575 18748 105463;105464;105465;105466;105467 127802;127803;127804;127805;127806;127807 127806 2124;2125 6 VHTVMTLEQQDMVCYTAQTLVR Oxidation (M) 2638.2553 0.25532812 1575 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 1 0 By MS/MS By MS/MS 7 0.707 2 4 2 3 5 60.486 60.839 3 4.1368E-45 20451 20211116_3446_TMUAki_TMT10x_S_F7 213.03 199.02 11378000 18474000 101300 16973000 12031000 15590000 12434000 12183000 10639000 11556000 14185000 10594000 17232000 876770 17401000 11549000 15891000 12535000 12540000 11028000 11312000 13574000 11 11 5 11 11 11 11 11 11 11 11 5720800 8654600 20609 8024200 5680000 10014000 6511600 5616800 4897900 5588600 6867900 5326300 8073300 385030 8260300 5464800 9979700 6511600 5931800 5123300 5459300 6564300 5 5 1 5 5 5 5 5 5 5 5 5657100 9819000 80689 8948700 6351400 5576300 5921900 6566400 5741500 5967300 7317000 5267900 9158900 491740 9140200 6084000 5911000 6023700 6608400 5904800 5852700 7009700 6 6 4 6 6 6 6 6 6 6 6 6586500000 3243300000 3343200000 20395 1575 18748 105468;105469;105470;105471;105472;105473;105474;105475 127808;127809;127810;127811;127812;127813;127814;127815;127816;127817;127818;127819 127817 2124;2125 12 VHTVMTLEQQDMVCYTAQTLVR Unmodified 2622.2604 0.2604135 1575 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 68.292 68.503 3 1.004E-44 21641 20211116_3436_TMUAki_TMT10x_P_F8 205.02 188.53 5504100 9554300 90743 8425600 6513600 9007100 7077100 6534000 6060400 6438800 7367200 5125100 8910900 499860 8683900 6261600 9084400 7117700 6765300 6256300 6292400 7066400 5 5 4 5 5 5 5 5 5 5 5 3181700 5222500 24053 4869900 3538100 6416100 4268300 3767800 3797100 3881200 4116100 2962200 4871800 236010 5016100 3408700 6381400 4276700 3967900 3894800 3785900 3960800 3 3 2 3 3 3 3 3 3 3 3 2322400 4331800 66690 3555700 2975500 2591000 2808800 2766200 2263300 2557600 3251100 2162900 4039100 263840 3667800 2852900 2703000 2841000 2797400 2361400 2506500 3105600 2 2 2 2 2 2 2 2 2 2 2 2524900000 1494600000 1030300000 20396 1575 18748 105476;105477;105478;105479 127820;127821;127822;127823;127824 127822 5 VHVGDEDFVHLR Unmodified 1421.7052 0.70516197 483 P04080 CSTB Cystatin-B yes yes 0 0 0 0 By MS/MS By MS/MS 2.82 1.04 2 4 7 3 1 10 7 41.735 41.691 3;4 4.6898E-17 13805 20211116_3441_TMUAki_TMT10x_S_F3 210.35 186.06 10482000 17017000 111240 18873000 19285000 19391000 12372000 12758000 12683000 11740000 14830000 9760200 15886000 1050000 19130000 18321000 19573000 12921000 13276000 12965000 11508000 14240000 21 21 11 21 21 21 21 21 21 21 21 7266200 11947000 79927 12935000 16382000 16720000 9552400 8722600 8872700 7973200 10273000 6765900 11152000 771220 13183000 15538000 16620000 10025000 9249700 9105900 7817900 9866700 14 14 7 14 14 14 14 14 14 14 14 3215700 5070200 31316 5937400 2903000 2671300 2819700 4035900 3810200 3767000 4557100 2994300 4734300 278750 5947000 2782500 2953500 2895200 4026500 3859300 3690200 4373000 7 7 4 7 7 7 7 7 7 7 7 4503700000 2667400000 1836300000 20397 483 18749 105480;105481;105482;105483;105484;105485;105486;105487;105488;105489;105490;105491;105492;105493;105494;105495;105496 127825;127826;127827;127828;127829;127830;127831;127832;127833;127834;127835;127836;127837;127838;127839;127840;127841;127842;127843;127844;127845;127846;127847 127845 23 VHVQFFDDSPTR Unmodified 1446.6892 0.68917755 1183 P52701;P52701-2 MSH6 DNA mismatch repair protein Msh6 yes no 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 46.759 46.888 3 7.1569E-16 13470 20211116_3442_TMUAki_TMT10x_S_F4 194.96 179.1 6057600 9908900 136890 11200000 10336000 10282000 7526600 8652400 8127600 7404000 8593500 5641200 9250900 689720 11321000 9848400 10495000 7800000 8842100 8258700 7282600 8275400 5 5 5 5 5 5 5 5 5 5 5 3679300 5936500 105570 6673000 7856900 8492500 5481600 5473100 5081600 4653200 5368600 3426600 5542100 461940 6782700 7480200 8471500 5672100 5692500 5197300 4578300 5170100 3 3 3 3 3 3 3 3 3 3 3 2378300 3972400 31319 4527300 2479200 1789800 2044900 3179300 3046000 2750800 3224800 2214600 3708800 227780 4538400 2368200 2023400 2128000 3149600 3061300 2704300 3105300 2 2 2 2 2 2 2 2 2 2 2 2015400000 1478600000 536860000 20398 1183 18750 105497;105498;105499;105500;105501 127848;127849;127850;127851;127852 127851 5 VHVVIGPK Unmodified 847.52797 0.52797287 2304 Q8WUY3;Q8WUY3-4;Q8WUY3-2;Q8WUY3-3 PRUNE2 Protein prune homolog 2 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 37.48 37.437 3 0.0039763 10882 20211116_3439_TMUAki_TMT10x_S_F1 81.784 67.266 907350 1464500 27316 1442400 1091000 1233300 969340 977350 919670 858210 1141400 845040 1366400 103260 1469900 1044700 1263500 988070 1003100 945650 843080 1094200 2 2 2 2 2 2 2 2 2 2 2 394570 621880 11042 638540 627900 776020 483470 458170 432770 369410 504230 367460 580340 46271 652300 599100 774940 496390 479220 445020 364440 484200 1 1 1 1 1 1 1 1 1 1 1 512790 842600 16274 803830 463100 457250 485870 519190 486910 488800 637190 477580 786090 56984 817600 445600 488580 491680 523840 500630 478640 610020 1 1 1 1 1 1 1 1 1 1 1 104280000 62075000 42208000 20399 2304 18751 105502;105503 127853;127854 127854 2 VHYENNSPFLTITSMTR Oxidation (M) 2024.9626 0.96257522 494 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 1 0 By MS/MS By MS/MS 7 0.707 1 2 1 3 1 51.151 51.49 3 0.0011192 15895 20211116_3435_TMUAki_TMT10x_P_F7 62.278 53.228 5653100 9271700 50384 9578800 8102700 9415300 7449200 7369500 7438100 6834800 8127500 5263900 8652600 538450 9747800 7755100 9555800 7589800 7580000 7592000 6697300 7819000 3 3 2 3 3 3 3 3 3 3 3 3946300 5881300 50384 5906600 6051300 7768000 6000800 4445800 4244700 4261600 5353700 3674800 5487900 403610 6051700 5804000 7724000 6035100 4682300 4434400 4169700 5130200 2 2 2 2 2 2 2 2 2 2 2 1706800 3390400 0 3672300 2051400 1647400 1448400 2923700 3193500 2573200 2773800 1589100 3164700 134840 3696100 1951100 1831800 1554700 2897700 3157500 2527600 2688800 1 1 0 1 1 1 1 1 1 1 1 3526900000 2486100000 1040800000 20400 494 18752 105504;105505;105506;105507 127855;127856;127857 127855 397 3 VIAALLQTMEDQGNQR Unmodified 1785.9043 0.90433206 84 O00410;O00410-2;O00410-3 IPO5 Importin-5 yes no 0 0 0 0 By MS/MS By MS/MS 7.22 0.786 2 3 4 4 5 80.513 80.522 2;3 2.6184E-69 26015 20211116_3447_TMUAki_TMT10x_S_F8 308.12 286.57 10541000 16400000 23192 16016000 11585000 11913000 12439000 7477500 6736900 8308200 12144000 9813500 15301000 613620 16305000 11124000 12290000 12396000 7851300 7295100 8080000 11548000 6 6 1 6 6 6 6 6 6 6 6 4626400 6605900 0 6279700 3952000 6561500 4985400 3014200 2871000 3260000 4345400 4306900 6162800 279960 6433600 3809200 6587300 4937400 3251000 3065600 3173800 4146200 3 3 0 3 3 3 3 3 3 3 3 5914100 9793600 23192 9736300 7633000 5351500 7453200 4463300 3866000 5048200 7798900 5506600 9138300 333660 9871100 7314500 5702300 7458400 4600300 4229500 4906300 7401600 3 3 1 3 3 3 3 3 3 3 3 5483300000 2108300000 3375100000 20401 84 18753 105508;105509;105510;105511;105512;105513;105514;105515;105516 127858;127859;127860;127861;127862;127863;127864;127865 127864 8 VIAALLQTMEDQGNQR Oxidation (M) 1801.8992 0.89924668 84 O00410;O00410-2;O00410-3 IPO5 Importin-5 yes no 0 0 1 0 By MS/MS By MS/MS 6.2 0.748 1 2 2 2 3 67.385 67.673 3 1.692E-06 20978 20211116_3444_TMUAki_TMT10x_S_F5 94.717 81 6654900 10830000 92771 10446000 7479800 10970000 8321500 7510900 6483600 7567500 8375800 6196900 10104000 624650 10692000 7197100 11066000 8339900 7812800 6743600 7388500 8021300 2 2 1 2 2 2 2 2 2 2 2 3549600 5897300 92771 5458500 3940000 7609100 4759000 4209400 3438800 4042900 4564400 3305700 5501200 386210 5631700 3804100 7542600 4743600 4446400 3596100 3955400 4368300 1 1 1 1 1 1 1 1 1 1 1 3105300 4932300 0 4987700 3539800 3361200 3562500 3301500 3044900 3524600 3811400 2891200 4602600 238430 5060100 3393000 3523200 3596400 3366400 3147500 3433100 3653000 1 1 0 1 1 1 1 1 1 1 1 2222500000 859830000 1362700000 20402 84 18753 105517;105518;105519;105520;105521 127866;127867;127868;127869 127868 58 4 VIAATNRVDILDPALLR Unmodified 1849.0785 0.078531678 711 P17980 PSMC3 26S protease regulatory subunit 6A yes yes 0 0 0 1 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 67.929 68.041 3 1.8922E-43 23393 20211116_3439_TMUAki_TMT10x_S_F1 233.09 205.04 61441000 98636000 676890 93218000 74885000 88450000 69009000 70330000 65189000 68746000 77351000 57210000 92018000 5687800 95409000 71682000 89994000 70188000 72374000 66917000 67206000 74241000 9 9 6 9 9 9 9 9 9 9 9 25299000 38859000 385210 37146000 26718000 49059000 29003000 29085000 26792000 28082000 30124000 23558000 36253000 2393300 38195000 25694000 48795000 29231000 30549000 27471000 27468000 28957000 4 4 3 4 4 4 4 4 4 4 4 36142000 59777000 291680 56071000 48167000 39391000 40006000 41246000 38397000 40664000 47227000 33653000 55765000 3294400 57214000 45988000 41199000 40956000 41825000 39446000 39739000 45285000 5 5 3 5 5 5 5 5 5 5 5 13010000000 7619100000 5391000000 20403 711 18754 105522;105523;105524;105525;105526;105527 127870;127871;127872;127873;127874;127875;127876;127877;127878 127874 9 VIAAVSHELITSTTR Unmodified 1596.8835 0.88352026 1023 P42858 HTT Huntingtin yes yes 0 0 0 0 By MS/MS 1 0 1 1 59.917 59.624 3 0.017068 20012 20211116_3439_TMUAki_TMT10x_S_F1 48.351 23.56 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20404 1023 18755 105528 127879 127879 1 VIADNVK Unmodified 757.4334 0.43340378 1271 P60174;P60174-1;P60174-4 TPI1 Triosephosphate isomerase yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 37.707 37.813 2 0.0083013 9505 20211116_3442_TMUAki_TMT10x_S_F4 100.45 32.029 12030000 19545000 241760 22480000 16364000 15935000 11756000 12807000 16810000 12029000 18426000 11203000 18249000 1283400 22628000 15590000 16567000 12322000 13156000 16937000 11780000 17725000 4 4 4 4 4 4 4 4 4 4 4 5974100 9254900 24474 8832200 11761000 11717000 7537200 4533300 5144300 4287500 6746100 5562700 8634200 599150 9083300 11172000 11597000 7792100 4964400 5395000 4197500 6458200 1 1 1 1 1 1 1 1 1 1 1 6055600 10291000 217290 13648000 4603600 4217500 4219200 8273600 11666000 7741100 11680000 5640000 9614800 684220 13545000 4417700 4969400 4530300 8191400 11542000 7582300 11267000 3 3 3 3 3 3 3 3 3 3 3 384910000 172160000 212740000 20405 1271 18756 105529;105530;105531 127880;127881;127882 127882 3 VIAGLYQR Unmodified 918.5287 0.52870115 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS 1 0 1 1 45.914 45.914 2 0.024335 12378 20211116_3428_TMUAki_TMT10x_P_F1 67.889 42.945 1358500 2181600 0 2399600 3956500 3862900 2300300 2364000 2332500 2041200 2215300 1264900 2036500 148890 2454500 3752000 3811300 2420900 2469600 2367300 2006800 2140700 1 1 0 1 1 1 1 1 1 1 1 1358500 2181600 0 2399600 3956500 3862900 2300300 2364000 2332500 2041200 2215300 1264900 2036500 148890 2454500 3752000 3811300 2420900 2469600 2367300 2006800 2140700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 132340000 132340000 0 20406 1433 18757 105532 127883 127883 1 VIAINVDDPDAANYNDINDVK Unmodified 2287.0968 0.096820096 1777 Q15181 PPA1 Inorganic pyrophosphatase yes yes 0 0 0 0 By MS/MS By MS/MS 2.89 1.29 2 1 3 2 1 4 5 71.326 71.193 3;4 2.3162E-26 24697 20211116_3430_TMUAki_TMT10x_P_F3 164.97 155.41 59419000 98565000 134730 100170000 59227000 70122000 63295000 44240000 49434000 51320000 66244000 55322000 91978000 4561500 101630000 56869000 72708000 63561000 46499000 51494000 49830000 63383000 16 16 6 16 16 16 16 16 16 16 16 28737000 45582000 34952 45149000 27470000 44998000 30918000 20258000 23002000 23249000 30527000 26756000 42532000 2259200 46088000 26419000 45294000 30936000 21935000 24014000 22583000 29215000 8 8 3 8 8 8 8 8 8 8 8 30682000 52983000 99778 55023000 31758000 25125000 32378000 23982000 26431000 28071000 35717000 28566000 49446000 2302300 55542000 30450000 27414000 32626000 24563000 27479000 27247000 34168000 8 8 3 8 8 8 8 8 8 8 8 9425600000 3865400000 5560200000 20407 1777 18758 105533;105534;105535;105536;105537;105538;105539;105540;105541 127884;127885;127886;127887;127888;127889;127890;127891;127892;127893;127894;127895;127896;127897;127898;127899 127888 16 VIAINVDDPDAANYNDINDVKR Unmodified 2443.1979 0.19793112 1777 Q15181 PPA1 Inorganic pyrophosphatase yes yes 0 0 0 1 By MS/MS By MS/MS 4.92 0.954 1 3 4 4 7 5 61.989 62.005 3;4 1.8308E-55 19604 20211116_3433_TMUAki_TMT10x_P_F5 224.19 216.48 44431000 78030000 755960 62032000 58630000 90051000 58491000 79380000 68546000 69490000 68761000 41372000 72751000 4152800 64832000 56231000 89770000 59648000 80951000 69301000 68275000 66325000 12 12 9 12 12 12 12 12 12 12 12 23375000 38656000 454620 32352000 30624000 61821000 35514000 39695000 35562000 36309000 33476000 21767000 36047000 2378000 33891000 29508000 60664000 35769000 41374000 36102000 35601000 32358000 8 8 6 8 8 8 8 8 8 8 8 21056000 39374000 301340 29680000 28006000 28230000 22977000 39686000 32983000 33181000 35285000 19605000 36704000 1774800 30941000 26723000 29105000 23879000 39577000 33199000 32674000 33967000 4 4 3 4 4 4 4 4 4 4 4 13152000000 6932000000 6220200000 20408 1777 18759 105542;105543;105544;105545;105546;105547;105548;105549;105550;105551;105552;105553 127900;127901;127902;127903;127904;127905;127906;127907;127908;127909;127910;127911;127912;127913 127906 14 VICILSHPIK Unmodified 1178.6845 0.68454987 1133 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 56.207 55.938 3 0.00011524 19540 20211116_3441_TMUAki_TMT10x_S_F3 113.93 82.555 34946000 59845000 617530 65859000 58356000 65810000 41842000 35050000 33634000 36861000 44667000 32542000 55864000 3639800 66761000 55566000 66354000 43051000 37243000 34967000 35926000 42747000 6 6 4 6 6 6 6 6 6 6 6 22276000 38670000 359540 43060000 47101000 54205000 32578000 22547000 22443000 23878000 27772000 20742000 36100000 2405500 43785000 44812000 53822000 33491000 24562000 23464000 23266000 26625000 3 3 2 3 3 3 3 3 3 3 3 12670000 21174000 257990 22798000 11255000 11604000 9263700 12503000 11191000 12983000 16895000 11799000 19764000 1234200 22976000 10755000 12532000 9560400 12681000 11503000 12660000 16121000 3 3 2 3 3 3 3 3 3 3 3 3381700000 1995800000 1385900000 20409 1133 18760 105554;105555;105556;105557 127914;127915;127916;127917;127918;127919 127918 6 VIDFDENTALDDAEEESFRK Unmodified 2342.055 0.055014861 1701 Q14257;Q14257-2 RCN2 Reticulocalbin-2 yes no 0 0 0 1 By MS/MS By MS/MS 2.45 1.37 4 2 2 2 1 5 6 71.074 70.943 3;4 1.5318E-80 22822 20211116_3440_TMUAki_TMT10x_S_F2 306.82 270.37 150320000 252410000 1118800 237280000 170070000 200180000 168040000 121900000 136470000 139700000 175670000 139960000 235470000 12432000 242580000 163000000 204460000 169580000 128430000 141600000 135700000 168250000 20 20 14 20 20 20 20 20 20 20 20 57511000 95246000 574250 89292000 56418000 99971000 64907000 48161000 51410000 55386000 67684000 53549000 88853000 4819400 91673000 54314000 100020000 64977000 51798000 53469000 53795000 64789000 7 7 4 7 7 7 7 7 7 7 7 92805000 157170000 544510 147990000 113650000 100210000 103140000 73741000 85055000 84313000 107980000 86408000 146620000 7612400 150910000 108680000 104440000 104610000 76627000 88134000 81909000 103460000 13 13 10 13 13 13 13 13 13 13 13 31813000000 17506000000 14307000000 20410 1701 18761 105558;105559;105560;105561;105562;105563;105564;105565;105566;105567;105568 127920;127921;127922;127923;127924;127925;127926;127927;127928;127929;127930;127931;127932;127933;127934;127935;127936;127937;127938;127939 127930 20 VIDGLETLDELEKLPVNEK Unmodified 2153.1467 0.1467304 2790 Q9H2H8;Q9H2H8-2 PPIL3 Peptidyl-prolyl cis-trans isomerase-like 3 yes no 0 0 0 1 By matching By MS/MS 1.75 0.829 2 1 1 1 3 78.583 78.545 3 1.75E-17 27637 20211116_3439_TMUAki_TMT10x_S_F1 145.69 128.2 5820300 10377000 138750 9110800 9136400 7707500 8170600 7927700 7600800 8266200 8946000 5420300 9677800 658300 9363000 8744500 7943400 8320700 8059400 7805200 8059200 8588200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5820300 10377000 138750 9110800 9136400 7707500 8170600 7927700 7600800 8266200 8946000 5420300 9677800 658300 9363000 8744500 7943400 8320700 8059400 7805200 8059200 8588200 2 2 2 2 2 2 2 2 2 2 2 1972900000 849870000 1123100000 20411 2790 18762 105569;105570;105571;105572 127940;127941;127942 127940 3 VIDGPHSGR Unmodified 936.47773 0.47772821 78 O00267;O00267-2 SUPT5H Transcription elongation factor SPT5 yes no 0 0 0 0 By MS/MS 3 0 1 1 26.966 26.673 3 0.088937 7796 20211116_3441_TMUAki_TMT10x_S_F3 31.843 31.843 56406 107730 2172.1 92306 69280 67682 75260 50501 51206 53387 72223 52536 100470 6881.1 94889 66711 70082 75282 52299 53892 52021 69021 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 56406 107730 2172.1 92306 69280 67682 75260 50501 51206 53387 72223 52536 100470 6881.1 94889 66711 70082 75282 52299 53892 52021 69021 1 1 1 1 1 1 1 1 1 1 1 1383000 0 1383000 20412 78 18763 105573 127943 127943 1 VIDPATATSVDLR Unmodified 1356.7249 0.72489436 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 By MS/MS By MS/MS 4.17 0.799 3 4 5 6 6 55.011 55.02 2;3 2.3064E-23 16640 20211116_3433_TMUAki_TMT10x_P_F5 217.14 154.59 38579000 65842000 844780 69115000 58931000 78462000 46954000 70976000 67311000 62918000 62650000 35926000 61450000 4091800 70418000 56244000 79187000 48884000 72300000 67422000 61781000 60580000 14 14 9 14 14 14 14 14 14 14 14 20880000 35290000 469900 37137000 43239000 61488000 33107000 39392000 36651000 33106000 34310000 19444000 32936000 2377800 38120000 41227000 60641000 34221000 40978000 37048000 32592000 33170000 8 8 4 8 8 8 8 8 8 8 8 17699000 30552000 374880 31978000 15691000 16973000 13847000 31584000 30660000 29813000 28340000 16482000 28514000 1713900 32298000 15017000 18545000 14663000 31322000 30373000 29189000 27410000 6 6 5 6 6 6 6 6 6 6 6 10572000000 5283700000 5288000000 20413 1147 18764 105574;105575;105576;105577;105578;105579;105580;105581;105582;105583;105584;105585 127944;127945;127946;127947;127948;127949;127950;127951;127952;127953;127954;127955;127956;127957;127958;127959;127960;127961 127949 18 VIDPVAPR Unmodified 865.50215 0.50215205 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 0 By MS/MS By MS/MS 4.44 1.64 1 2 2 2 2 4 5 39.82 39.801 2 0.001839 10403 20211116_3431_TMUAki_TMT10x_P_F4 116.88 99.942 8687100 13360000 78129 14573000 13563000 13967000 9778500 10946000 10825000 10030000 11710000 8089100 12470000 859830 14772000 12915000 14199000 10149000 11255000 10998000 9833900 11269000 6 6 5 6 6 6 6 6 6 6 6 5540900 8177700 37219 9161200 10300000 11179000 6391600 6602900 6426400 5998500 6967800 5159400 7634300 559220 9306600 9779900 11161000 6688700 6926200 6555400 5883400 6704900 3 3 2 3 3 3 3 3 3 3 3 3146200 5181900 40910 5411900 3263400 2788600 3386900 4343500 4398800 4031900 4742200 2929700 4836200 300610 5465600 3134600 3037600 3460300 4328400 4443000 3950600 4564000 3 3 3 3 3 3 3 3 3 3 3 896680000 561250000 335430000 20414 542 18765 105586;105587;105588;105589;105590;105591;105592;105593;105594 127962;127963;127964;127965;127966;127967;127968;127969 127963 8 VIEDGPEPRPNLR Unmodified 1490.7841 0.78414057 263 O60306 AQR Intron-binding protein aquarius yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 36.671 36.424 3 0.00016171 11558 20211116_3441_TMUAki_TMT10x_S_F3 89.46 67.131 748720 1163900 17152 1288500 716550 751260 789670 789190 960410 793280 1077500 697260 1086500 77609 1297600 689940 799320 802460 800610 973740 774590 1035800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 748720 1163900 17152 1288500 716550 751260 789670 789190 960410 793280 1077500 697260 1086500 77609 1297600 689940 799320 802460 800610 973740 774590 1035800 1 1 1 1 1 1 1 1 1 1 1 43760000 0 43760000 20415 263 18766 105595;105596 127970;127971 127971 2 VIEDGPEPRPNLRGESR Unmodified 1919.9813 0.98133683 263 O60306 AQR Intron-binding protein aquarius yes yes 0 0 0 2 By MS/MS 4 0 1 1 32.96 32.987 4 0.00087524 7566 20211116_3431_TMUAki_TMT10x_P_F4 65.105 45.527 473960 689560 2172.4 890300 1494500 1182200 682570 602740 682980 520650 822200 441320 644180 55613 898440 1412700 1173400 734830 639610 699740 511880 788840 1 1 1 1 1 1 1 1 1 1 1 473960 689560 2172.4 890300 1494500 1182200 682570 602740 682980 520650 822200 441320 644180 55613 898440 1412700 1173400 734830 639610 699740 511880 788840 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 40766000 40766000 0 20416 263 18767 105597 127972 127972 1 VIEDRDSQLR Unmodified 1229.6364 0.6364137 2184 Q8N1F7;Q8N1F7-2 NUP93 Nuclear pore complex protein Nup93 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 31.242 31.003 3 9.5976E-10 7945 20211116_3429_TMUAki_TMT10x_P_F2 160.91 128.75 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20417 2184 18768 105598;105599 127973;127974 127973 2 VIEDVAFACALTSSVPTTK Unmodified 2008.0187 0.018693117 1712 Q14527;Q14527-2 HLTF Helicase-like transcription factor yes no 0 0 0 0 By MS/MS 8 0 1 1 79.114 79.085 3 0.10483 25437 20211116_3447_TMUAki_TMT10x_S_F8 21.056 9.0795 5301000 9193400 3105 8557500 6822600 4706300 6818800 4040800 3236200 4257900 6493500 4935800 8576100 463690 8717400 6541900 5017000 6805900 4148500 3564600 4149600 6163200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5301000 9193400 3105 8557500 6822600 4706300 6818800 4040800 3236200 4257900 6493500 4935800 8576100 463690 8717400 6541900 5017000 6805900 4148500 3564600 4149600 6163200 1 1 1 1 1 1 1 1 1 1 1 953930000 0 953930000 20418 1712 18769 105600 127975 127975 1 VIEEEWQQVDR Unmodified 1429.6838 0.68375782 1006 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 56.043 55.892 2 7.6052E-16 16411 20211116_3428_TMUAki_TMT10x_P_F1 202.96 174.56 7495900 12556000 131630 16161000 11420000 11981000 9314500 6245700 5649900 6195200 9639700 6980200 11730000 769990 16170000 10903000 12334000 9444800 6638100 6049800 6052600 9175600 2 2 1 2 2 2 2 2 2 2 2 4125600 6502200 0 8699900 8957800 9377000 7272400 3175800 2484000 3045200 5047800 3841100 6075500 380610 8730300 8544800 9371600 7316600 3537900 2827500 2979500 4790100 1 1 0 1 1 1 1 1 1 1 1 3370300 6053700 131630 7460800 2462300 2603700 2042200 3070000 3166000 3150000 4591900 3139000 5654000 389380 7439300 2358400 2962500 2128200 3100200 3222300 3073200 4385500 1 1 1 1 1 1 1 1 1 1 1 952710000 696430000 256280000 20419 1006 18770 105601;105602;105603 127976;127977;127978 127976 3 VIEPFSR Unmodified 846.45995 0.45995289 73 O00231;O00231-2 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 45.685 45.805 2 0.058364 12073 20211116_3445_TMUAki_TMT10x_S_F6 64.567 36.144 7209700 10730000 14217 12110000 11673000 10035000 7407400 8127200 8530100 6950200 8782500 6713100 10017000 671390 12225000 11086000 10308000 7771400 8324200 8637800 6836400 8464300 2 2 1 2 2 2 2 2 2 2 2 3699200 5368200 14217 6283000 8198200 7127700 4487000 4136500 4456500 3289800 4235400 3444500 5012500 382950 6357700 7768400 7141900 4744400 4331300 4527200 3247900 4092600 1 1 1 1 1 1 1 1 1 1 1 3510500 5361700 0 5826600 3474700 2907000 2920400 3990800 4073600 3660400 4547000 3268600 5004800 288440 5867600 3317600 3165900 3027000 3993000 4110500 3588500 4371700 1 1 0 1 1 1 1 1 1 1 1 314440000 149730000 164700000 20420 73 18771 105604;105605 127979 127979 1 VIEPGCVR Unmodified 928.48004 0.4800364 298 O60884 DNAJA2 DnaJ homolog subfamily A member 2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.25 0.829 1 1 2 2 2 35.394 35.375 2 0.0020398 8567 20211116_3431_TMUAki_TMT10x_P_F4 114.43 69.9 4806100 7833200 52186 7968200 7221200 6982700 5839900 5259300 5416200 4498900 6117700 4475000 7309700 441740 8104600 6889900 7135500 5982800 5411500 5553500 4425200 5879800 4 4 3 4 4 4 4 4 4 4 4 2761000 4566700 22302 4561900 5104200 5362700 3532300 3173800 3323800 2731000 3508800 2570700 4261200 243330 4666200 4853500 5364600 3658700 3324100 3397100 2685500 3379100 2 2 1 2 2 2 2 2 2 2 2 2045100 3266500 29883 3406200 2117000 1620000 2307600 2085400 2092400 1767900 2608900 1904400 3048500 198410 3438300 2036400 1771000 2324100 2087300 2156400 1739700 2500700 2 2 2 2 2 2 2 2 2 2 2 242990000 185040000 57949000 20421 298 18772 105606;105607;105608;105609 127980;127981;127982;127983 127980 4 VIEPQYFGLAYLFR Unmodified 1714.9083 0.90827845 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 By MS/MS 4 0 1 1 81.218 81.203 2 5.2602E-06 27566 20211116_3442_TMUAki_TMT10x_S_F4 87.878 39.438 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20422 1018 18773 105610 127984 127984 1 VIESTQDLGNDLAGVMALQR Oxidation (M) 2145.0736 0.073582234 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 1 0 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 72.673 72.633 3 0.0042927 26335 20211116_3441_TMUAki_TMT10x_S_F3 55.575 44.135 6156900 11069000 177620 9963000 7176500 8449600 8139400 5508100 4946100 6080000 7529500 5734000 10324000 690270 10219000 6916200 8635100 8107000 5765900 5263300 5914500 7183400 2 2 2 2 2 2 2 2 2 2 2 3106600 5416200 105850 5442600 3264900 4959700 4255700 2148100 1774200 2469700 3492200 2893300 5054000 358420 5543300 3161900 5019200 4188100 2335500 1974500 2398800 3315600 1 1 1 1 1 1 1 1 1 1 1 3050300 5652800 71771 4520400 3911600 3489900 3883800 3360000 3171900 3610300 4037300 2840700 5270400 331840 4676100 3754300 3615900 3918900 3430300 3288800 3515700 3867900 1 1 1 1 1 1 1 1 1 1 1 971290000 425210000 546080000 20423 1475 18774 105611;105612;105613 127985;127986;127987 127986 2003 3 VIFFLPWQK Unmodified 1176.6696 0.66955173 1028 P43304;P43304-2 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 8 0 3 2 1 80.61 80.611 2 3.3247E-05 26671 20211116_3436_TMUAki_TMT10x_P_F8 121.29 83.734 2327300 3972800 898.93 3841100 3288800 2055400 3264200 1490600 1127500 1808600 2817400 2167000 3706500 207250 3901200 3152900 2191300 3246100 1553500 1300500 1753300 2665500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2327300 3972800 898.93 3841100 3288800 2055400 3264200 1490600 1127500 1808600 2817400 2167000 3706500 207250 3901200 3152900 2191300 3246100 1553500 1300500 1753300 2665500 1 1 1 1 1 1 1 1 1 1 1 735880000 365120000 370760000 20424 1028 18775 105614;105615;105616 127988;127989 127988 2 VIFGLFGK Unmodified 879.52182 0.52182486 779 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 1.49 2 2 2 2 4 6 6 65.808 65.805 2 8.4766E-05 26168 20211116_3431_TMUAki_TMT10x_P_F4 168.43 103.57 363370000 612370000 1341200 662890000 474070000 472870000 458700000 277020000 224980000 306680000 420100000 338320000 571590000 29708000 669840000 454050000 489050000 458850000 292430000 246030000 298300000 399210000 8 8 5 8 8 8 8 8 8 8 8 165490000 262760000 326650 296240000 199110000 291630000 201460000 121660000 103930000 134760000 184910000 154080000 245310000 13431000 299780000 190920000 293560000 201200000 132670000 112870000 131080000 175870000 5 5 3 5 5 5 5 5 5 5 5 197890000 349600000 1014600 366650000 274970000 181240000 257240000 155360000 121050000 171910000 235180000 184240000 326280000 16278000 370060000 263130000 195490000 257640000 159760000 133160000 167220000 223340000 3 3 2 3 3 3 3 3 3 3 3 24674000000 9140200000 15534000000 20425 779 18776 105617;105618;105619;105620;105621;105622;105623;105624;105625;105626;105627;105628 127990;127991;127992;127993;127994;127995;127996;127997;127998;127999 127991 10 VIFLENYR Unmodified 1052.5655 0.56548059 620;521 P11216;P11217;P11217-2;P06737;P06737-2 PYGB;PYGM;PYGL Glycogen phosphorylase, brain form;Glycogen phosphorylase, muscle form;Glycogen phosphorylase, liver form no no 0 0 0 0 By MS/MS 8 0 1 1 61.741 61.929 2 0.004012 18947 20211116_3436_TMUAki_TMT10x_P_F8 95.352 63.132 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20426 620;521 18777 105629 128000 128000 1 VIFLQGGGCGQFSAVPLNLIGLK Unmodified 2387.3035 0.30352259 3335 Q9Y617;Q9Y617-2 PSAT1 Phosphoserine aminotransferase yes no 0 0 0 0 By MS/MS By MS/MS 6.43 0.728 1 2 4 4 3 81.332 81.349 3;4 5.8764E-29 28803 20211116_3446_TMUAki_TMT10x_S_F7 178.72 168.12 7735100 12290000 55980 11923000 10550000 12087000 11463000 8399700 7541400 10094000 10050000 7201400 11467000 585800 12192000 10132000 12220000 11458000 8777000 7932700 9788200 9617100 8 8 4 8 8 8 8 8 8 8 8 2793300 4416700 39073 4313300 3683700 6684000 4251900 2832600 2913300 3725000 3697500 2601100 4120800 280470 4443000 3548800 6576400 4241800 3101100 3050200 3601200 3542600 3 3 3 3 3 3 3 3 3 3 3 4941800 7873700 16907 7609500 6866100 5403000 7210700 5567100 4628100 6368700 6352400 4600300 7346000 305330 7748600 6583700 5644000 7216200 5676000 4882500 6187000 6074500 5 5 1 5 5 5 5 5 5 5 5 2952400000 1205700000 1746700000 20427 3335 18778 105630;105631;105632;105633;105634;105635;105636 128001;128002;128003;128004;128005;128006;128007;128008 128006 8 VIFPAAEDKDQDLITIIGKEDAVR Unmodified 2655.4119 0.41194665 1467 Q00341;Q00341-2 HDLBP Vigilin yes no 0 0 0 2 By MS/MS 5 0.816 1 1 1 3 77.026 76.997 4 1.839E-29 25875 20211116_3442_TMUAki_TMT10x_S_F4 175.47 162.67 14307000 24357000 26624 20942000 20685000 17469000 17816000 13081000 12289000 14044000 17033000 13321000 22715000 1161900 21554000 19754000 17912000 18050000 13550000 12912000 13676000 16284000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14307000 24357000 26624 20942000 20685000 17469000 17816000 13081000 12289000 14044000 17033000 13321000 22715000 1161900 21554000 19754000 17912000 18050000 13550000 12912000 13676000 16284000 3 3 1 3 3 3 3 3 3 3 3 2781200000 0 2781200000 20428 1467 18779 105637;105638;105639 128009;128010;128011 128009 3 VIFPAPTPK Unmodified 968.5695 0.56950333 1630 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 By MS/MS 2 0 1 1 56.574 56.323 2 3.2377E-05 18168 20211116_3429_TMUAki_TMT10x_P_F2 117.04 53.556 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20429 1630 18780 105640 128012 128012 1 VIFRYCAGSCPR 2 Carbamidomethyl (C) 1598.7446 0.74460072 274 O60542 PSPN Persephin yes yes 0 2 0 1 By MS/MS 6 0 1 1 83.539 83.553 2 0.053328 27563 20211116_3445_TMUAki_TMT10x_S_F6 42.109 13.71 88511 178960 1655.9 165850 141960 138030 136480 133190 149050 132700 160280 82425 166940 9629.9 169700 136080 142220 139110 135640 151480 129620 154270 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 88511 178960 1655.9 165850 141960 138030 136480 133190 149050 132700 160280 82425 166940 9629.9 169700 136080 142220 139110 135640 151480 129620 154270 1 1 1 1 1 1 1 1 1 1 1 15398000 0 15398000 20430 274 18781 105641 128013 128013 2;3 1 VIGELVGHTER Unmodified 1208.6513 0.65133548 2287 Q8TEQ6 GEMIN5 Gem-associated protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.745 3 2 1 3 3 42.179 42.308 3 6.4162E-13 11226 20211116_3431_TMUAki_TMT10x_P_F4 144.7 124.22 1538900 2521700 8820.3 2729300 1656100 1339500 1384900 2118200 2143100 1855300 2308500 1432900 2353800 136190 2748900 1581600 1467800 1442400 2106500 2152900 1822900 2221800 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1538900 2521700 8820.3 2729300 1656100 1339500 1384900 2118200 2143100 1855300 2308500 1432900 2353800 136190 2748900 1581600 1467800 1442400 2106500 2152900 1822900 2221800 3 3 2 3 3 3 3 3 3 3 3 208470000 27984000 180480000 20431 2287 18782 105642;105643;105644;105645;105646;105647 128014;128015;128016;128017;128018;128019 128015 6 VIGHYAGEDATDAFR Unmodified 1620.7532 0.75323437 450 O95864;O95864-3 FADS2 Fatty acid desaturase 2 yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 45.481 45.466 3 5.4467E-30 12581 20211116_3431_TMUAki_TMT10x_P_F4 203.29 186.12 8389100 13521000 88134 15453000 11639000 11499000 9108900 7975600 7105900 6860600 10417000 7811600 12624000 805630 15569000 11100000 11879000 9309800 8253500 7434200 6746400 9946700 4 4 3 4 4 4 4 4 4 4 4 4855900 7587900 62987 8651700 8507000 8950900 6268000 4594200 4050300 3969900 5928100 4521800 7084300 512420 8755500 8104400 9002200 6406400 4872200 4284100 3902900 5660500 2 2 2 2 2 2 2 2 2 2 2 3533200 5933300 25147 6801200 3131900 2548000 2840900 3381400 3055600 2890800 4489200 3289800 5539600 293200 6813400 2996100 2876800 2903500 3381300 3150000 2843500 4286200 2 2 1 2 2 2 2 2 2 2 2 1458200000 1101200000 356970000 20432 450 18783 105648;105649;105650;105651;105652;105653 128020;128021;128022;128023;128024;128025 128021 6 VIGIDHIK Unmodified 893.53345 0.53345218 764 P22061;P22061-2 PCMT1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 6.25 0.433 3 1 1 3 43.941 44.2 3 0.00015838 11123 20211116_3434_TMUAki_TMT10x_P_F6 163.9 111.9 4695300 6991600 13854 7048500 7281300 7569800 5283000 5098000 4928500 5190900 5670600 4371700 6524100 416350 7194400 6930800 7623900 5452300 5310800 5055800 5065900 5447200 3 3 1 3 3 3 3 3 3 3 3 3712800 5387100 13854 5553400 6162100 6656400 4176500 4016700 3863100 4107600 4433700 3457000 5027400 344320 5670100 5858800 6653800 4330600 4219800 3964000 4007900 4259400 2 2 1 2 2 2 2 2 2 2 2 982490 1604400 0 1495100 1119200 913330 1106500 1081300 1065400 1083400 1236900 914700 1496700 72033 1524300 1072000 970100 1121700 1091000 1091800 1058000 1187800 1 1 0 1 1 1 1 1 1 1 1 1069500000 495900000 573570000 20433 764 18784 105654;105655;105656;105657 128026;128027;128028;128029 128027 4 VIGLSSDLQQVGGASAR Unmodified 1656.8795 0.87949752 81 O00303 EIF3F Eukaryotic translation initiation factor 3 subunit F yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 4 4 4 4 57.856 58.194 2;3 9.4327E-53 19157 20211116_3446_TMUAki_TMT10x_S_F7 267.37 205.69 81593000 132380000 2829600 147690000 119030000 130520000 99837000 91673000 89143000 90564000 114970000 75990000 123580000 9729100 149330000 113810000 133150000 101940000 95134000 92072000 88495000 110100000 11 11 9 11 11 11 11 11 11 11 11 40843000 64038000 1159300 69854000 77314000 90642000 60160000 45128000 41656000 43724000 55750000 38037000 59776000 4884600 71163000 73765000 90035000 61347000 48138000 43688000 42761000 53343000 6 6 5 6 6 6 6 6 6 6 6 40750000 68343000 1670300 77837000 41719000 39881000 39677000 46545000 47487000 46840000 59217000 37954000 63806000 4844600 78168000 40046000 43119000 40595000 46996000 48385000 45734000 56761000 5 5 4 5 5 5 5 5 5 5 5 7994700000 4660600000 3334100000 20434 81 18785 105658;105659;105660;105661;105662;105663;105664;105665 128030;128031;128032;128033;128034;128035;128036;128037;128038;128039;128040 128040 11 VIGMHYFSPVDK Oxidation (M) 1407.6857 0.68567208 992 P40939 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 1 0 By MS/MS By MS/MS 7 0 4 3 1 48.364 48.847 3 0.00048541 14804 20211116_3435_TMUAki_TMT10x_P_F7 79.82 56.903 5317900 8833100 78128 8445100 4891800 4969900 4124000 8264700 8202200 6818300 7490900 4952100 8240700 507740 8590800 4675900 5351400 4349500 8193400 8140600 6718700 7248200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5317900 8833100 78128 8445100 4891800 4969900 4124000 8264700 8202200 6818300 7490900 4952100 8240700 507740 8590800 4675900 5351400 4349500 8193400 8140600 6718700 7248200 2 2 2 2 2 2 2 2 2 2 2 508390000 0 508390000 20435 992 18786 105666;105667;105668;105669 128041;128042;128043;128044;128045 128042 1278 5 VIGNQSLVNELAFTAR Unmodified 1730.9315 0.93153309 1584 Q13011 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 6.2 2.64 1 2 2 1 4 72.922 72.979 2;3 1.1974E-28 25304 20211116_3446_TMUAki_TMT10x_S_F7 185.95 119.68 34211000 54662000 1330100 57472000 41690000 47183000 45118000 27019000 23673000 29776000 40188000 31864000 51016000 4158800 58279000 40139000 48249000 44922000 28572000 25608000 28967000 38256000 5 5 4 5 5 5 5 5 5 5 5 16557000 25070000 963470 27685000 19031000 29770000 24149000 13847000 12070000 14724000 19288000 15423000 23403000 2305300 28090000 18435000 29841000 23854000 14909000 13064000 14344000 18383000 2 2 2 2 2 2 2 2 2 2 2 17654000 29592000 366610 29787000 22659000 17413000 20969000 13172000 11603000 15051000 20900000 16440000 27613000 1853500 30189000 21705000 18408000 21068000 13663000 12544000 14623000 19874000 3 3 2 3 3 3 3 3 3 3 3 4213700000 1895700000 2318000000 20436 1584 18787 105670;105671;105672;105673;105674 128046;128047;128048;128049;128050;128051 128049 6 VIGQDSSEIHFK Unmodified 1358.683 0.68302954 1398 P63165;G2XKQ0 SUMO1 Small ubiquitin-related modifier 1;Small ubiquitin-related modifier yes no 0 0 0 0 By MS/MS 5 0 1 1 47.56 47.732 3 0.001206 13729 20211116_3433_TMUAki_TMT10x_P_F5 68.171 44.935 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20437 1398 18788 105675 128052 128052 1 VIGSELVQK Unmodified 971.56515 0.56514624 945 P35998;P35998-2 PSMC2 26S protease regulatory subunit 7 yes no 0 0 0 0 By MS/MS 6 0 1 1 51.469 51.601 2 0.0014008 14500 20211116_3445_TMUAki_TMT10x_S_F6 98.582 35.017 2923700 4899900 46018 5607500 2900200 2556600 2720300 3184800 3297400 3167000 3904500 2722600 4574800 284960 5624900 2779100 2806800 2786600 3205800 3350800 3093800 3747700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2923700 4899900 46018 5607500 2900200 2556600 2720300 3184800 3297400 3167000 3904500 2722600 4574800 284960 5624900 2779100 2806800 2786600 3205800 3350800 3093800 3747700 1 1 1 1 1 1 1 1 1 1 1 123780000 0 123780000 20438 945 18789 105676 128053 128053 1 VIGSGCNLDSAR Unmodified 1247.5928 0.59283433 462;531 P07195;P07864;Q6ZMR3;P00338;P00338-3;P00338-4;P00338-2;P00338-5 LDHB;LDHC;LDHAL6A;LDHA L-lactate dehydrogenase B chain;L-lactate dehydrogenase C chain;L-lactate dehydrogenase A-like 6A;L-lactate dehydrogenase A chain no no 0 0 0 0 By MS/MS By MS/MS 3.64 1.43 1 2 1 4 2 1 4 7 34.87 34.854 2 2.5158E-48 9540 20211116_3433_TMUAki_TMT10x_P_F5 304.24 232.2 14508000 27377000 14590 26087000 29590000 17704000 17113000 15114000 17151000 11507000 22705000 13507000 25541000 1273900 26579000 28049000 18494000 18012000 15389000 17644000 11387000 21730000 11 11 2 11 11 11 11 11 11 11 11 5470800 9593900 14590 9134100 19411000 11183000 6718000 5236300 6128500 4359400 7656100 5093700 8950400 633000 9381400 18292000 11132000 7459800 5597700 6314600 4293700 7338300 4 4 2 4 4 4 4 4 4 4 4 9037300 17783000 0 16953000 10178000 6521200 10395000 9877600 11022000 7147700 15049000 8413700 16590000 640890 17197000 9756800 7362200 10552000 9791800 11329000 7093300 14392000 7 7 0 7 7 7 7 7 7 7 7 4605100000 2657800000 1947400000 20439 531;462 18790 105677;105678;105679;105680;105681;105682;105683;105684;105685;105686;105687 128054;128055;128056;128057;128058;128059;128060;128061;128062;128063;128064;128065 128056 12 VIGSNFAPTVERDEFLVAEK Unmodified 2220.1426 0.14264808 2429 Q96CW5;Q96CW5-2;Q96CW5-3 TUBGCP3 Gamma-tubulin complex component 3 yes no 0 0 0 1 By MS/MS 6.5 0.5 1 1 2 70.065 70.158 3 1.5156E-07 22149 20211116_3445_TMUAki_TMT10x_S_F6 96.455 80.149 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20440 2429 18791 105688;105689 128066;128067 128066 2 VIGTLLGTVDK Unmodified 1114.6598 0.65977491 81 O00303 EIF3F Eukaryotic translation initiation factor 3 subunit F yes yes 0 0 0 0 By MS/MS By MS/MS 6.75 2.22 1 3 4 4 4 74.301 74.306 2;3 1.0334E-15 25353 20211116_3435_TMUAki_TMT10x_P_F7 204.34 136.78 70782000 118590000 423100 113870000 83484000 111780000 76926000 72677000 75074000 76125000 85005000 65906000 110640000 6166100 116470000 79891000 113130000 78315000 75970000 76808000 74205000 81694000 10 10 6 10 10 10 10 10 10 10 10 44115000 71995000 268470 70760000 54676000 84516000 49733000 45656000 47426000 46751000 51001000 41076000 67174000 3846200 72480000 52304000 84378000 50634000 48414000 48475000 45614000 49088000 5 5 3 5 5 5 5 5 5 5 5 26667000 46593000 154630 43114000 28808000 27269000 27192000 27021000 27648000 29374000 34004000 24830000 43463000 2319900 43992000 27587000 28751000 27681000 27556000 28333000 28591000 32606000 5 5 3 5 5 5 5 5 5 5 5 4937900000 2933000000 2005000000 20441 81 18792 105690;105691;105692;105693;105694;105695;105696;105697 128068;128069;128070;128071;128072;128073;128074;128075;128076;128077;128078 128069 11 VIHDNFGIVEGLMTTVHAITATQK Oxidation (M) 2610.3476 0.34757225 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 1 0 By MS/MS By MS/MS 2.93 1.79 30 71 74 19 3 17 109 105 65.304 65.246 2;3;4;5 4.8999E-48 25353 20211116_3440_TMUAki_TMT10x_S_F2 200.23 186.07 880330000 1453900000 9776600 1130900000 866410000 1622900000 963460000 1126600000 1180100000 1211600000 1158500000 819730000 1355400000 53828000 1183900000 833670000 1611800000 978910000 1173000000 1190300000 1179900000 1118200000 286 289 151 288 288 289 287 287 287 287 288 555530000 873950000 6155200 681870000 447750000 1157400000 531410000 667520000 722760000 737160000 703680000 517300000 814770000 26467000 716300000 431780000 1138800000 540580000 705500000 726230000 717080000 679410000 150 152 80 151 151 152 150 150 151 150 151 324800000 579930000 3621400 449010000 418660000 465470000 432050000 459060000 457370000 474480000 454810000 302430000 540640000 27361000 467560000 401890000 473030000 438330000 467530000 464100000 462770000 438820000 136 137 71 137 137 137 137 137 136 137 137 546170000000 312130000000 234040000000 20442 489 18793 105698;105699;105700;105701;105702;105703;105704;105705;105706;105707;105708;105709;105710;105711;105712;105713;105714;105715;105716;105717;105718;105719;105720;105721;105722;105723;105724;105725;105726;105727;105728;105729;105730;105731;105732;105733;105734;105735;105736;105737;105738;105739;105740;105741;105742;105743;105744;105745;105746;105747;105748;105749;105750;105751;105752;105753;105754;105755;105756;105757;105758;105759;105760;105761;105762;105763;105764;105765;105766;105767;105768;105769;105770;105771;105772;105773;105774;105775;105776;105777;105778;105779;105780;105781;105782;105783;105784;105785;105786;105787;105788;105789;105790;105791;105792;105793;105794;105795;105796;105797;105798;105799;105800;105801;105802;105803;105804;105805;105806;105807;105808;105809;105810;105811;105812;105813;105814;105815;105816;105817;105818;105819;105820;105821;105822;105823;105824;105825;105826;105827;105828;105829;105830;105831;105832;105833;105834;105835;105836;105837;105838;105839;105840;105841;105842;105843;105844;105845;105846;105847;105848;105849;105850;105851;105852;105853;105854;105855;105856;105857;105858;105859;105860;105861;105862;105863;105864;105865;105866;105867;105868;105869;105870;105871;105872;105873;105874;105875;105876;105877;105878;105879;105880;105881;105882;105883;105884;105885;105886;105887;105888;105889;105890;105891;105892;105893;105894;105895;105896;105897;105898;105899;105900;105901;105902;105903;105904;105905;105906;105907;105908;105909;105910;105911 128079;128080;128081;128082;128083;128084;128085;128086;128087;128088;128089;128090;128091;128092;128093;128094;128095;128096;128097;128098;128099;128100;128101;128102;128103;128104;128105;128106;128107;128108;128109;128110;128111;128112;128113;128114;128115;128116;128117;128118;128119;128120;128121;128122;128123;128124;128125;128126;128127;128128;128129;128130;128131;128132;128133;128134;128135;128136;128137;128138;128139;128140;128141;128142;128143;128144;128145;128146;128147;128148;128149;128150;128151;128152;128153;128154;128155;128156;128157;128158;128159;128160;128161;128162;128163;128164;128165;128166;128167;128168;128169;128170;128171;128172;128173;128174;128175;128176;128177;128178;128179;128180;128181;128182;128183;128184;128185;128186;128187;128188;128189;128190;128191;128192;128193;128194;128195;128196;128197;128198;128199;128200;128201;128202;128203;128204;128205;128206;128207;128208;128209;128210;128211;128212;128213;128214;128215;128216;128217;128218;128219;128220;128221;128222;128223;128224;128225;128226;128227;128228;128229;128230;128231;128232;128233;128234;128235;128236;128237;128238;128239;128240;128241;128242;128243;128244;128245;128246;128247;128248;128249;128250;128251;128252;128253;128254;128255;128256;128257;128258;128259;128260;128261;128262;128263;128264;128265;128266;128267;128268;128269;128270;128271;128272;128273;128274;128275;128276;128277;128278;128279;128280;128281;128282;128283;128284;128285;128286;128287;128288;128289;128290;128291;128292;128293;128294;128295;128296;128297;128298;128299;128300;128301;128302;128303;128304;128305;128306;128307;128308;128309;128310;128311;128312;128313;128314;128315;128316;128317;128318;128319;128320;128321;128322;128323;128324;128325;128326;128327;128328;128329;128330;128331;128332;128333;128334;128335;128336;128337;128338;128339;128340;128341;128342;128343;128344;128345;128346;128347;128348;128349;128350;128351;128352;128353;128354;128355;128356;128357;128358;128359;128360;128361;128362;128363;128364;128365;128366;128367 128243 391 289 VIHDNFGIVEGLMTTVHAITATQK Unmodified 2594.3527 0.35265763 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS 3.73 1.1 1 3 19 30 4 2 23 36 79.579 79.541 2;3;4;5 8.4053E-88 26555 20211116_3431_TMUAki_TMT10x_P_F4 275.2 264.51 263220000 397010000 1793800 386970000 245780000 233850000 282060000 83731000 61596000 108040000 213580000 245090000 370410000 20545000 393190000 236600000 244300000 277390000 93435000 77704000 104520000 201330000 80 80 42 80 80 80 80 79 80 79 80 132150000 191050000 1036100 195610000 113020000 149240000 135250000 42811000 31453000 52870000 108310000 123050000 178290000 10617000 198540000 108960000 152500000 132810000 49199000 39267000 51221000 102100000 37 37 15 37 37 37 37 37 37 37 37 131070000 205960000 757700 191360000 132760000 84610000 146820000 40920000 30143000 55170000 105270000 122040000 192120000 9927800 194650000 127640000 91797000 144580000 44236000 38437000 53295000 99224000 43 43 27 43 43 43 43 42 43 42 43 79520000000 37063000000 42457000000 20443 489 18793 105912;105913;105914;105915;105916;105917;105918;105919;105920;105921;105922;105923;105924;105925;105926;105927;105928;105929;105930;105931;105932;105933;105934;105935;105936;105937;105938;105939;105940;105941;105942;105943;105944;105945;105946;105947;105948;105949;105950;105951;105952;105953;105954;105955;105956;105957;105958;105959;105960;105961;105962;105963;105964;105965;105966;105967;105968;105969;105970 128368;128369;128370;128371;128372;128373;128374;128375;128376;128377;128378;128379;128380;128381;128382;128383;128384;128385;128386;128387;128388;128389;128390;128391;128392;128393;128394;128395;128396;128397;128398;128399;128400;128401;128402;128403;128404;128405;128406;128407;128408;128409;128410;128411;128412;128413;128414;128415;128416;128417;128418;128419;128420;128421;128422;128423;128424;128425;128426;128427;128428;128429;128430;128431;128432;128433;128434;128435;128436;128437;128438;128439;128440;128441;128442;128443;128444;128445;128446;128447 128381 80 VIHELANER Unmodified 1079.5724 0.57235688 1500 Q02880;Q02880-2 TOP2B DNA topoisomerase 2-beta yes no 0 0 0 0 By MS/MS 3 0 1 1 33.039 32.8 3 0.024044 10125 20211116_3441_TMUAki_TMT10x_S_F3 52.725 34.861 393730 645640 0 679280 396440 329260 403690 426370 450330 392530 512140 366580 602580 30064 685360 380130 359200 410540 427590 458280 384760 492130 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 393730 645640 0 679280 396440 329260 403690 426370 450330 392530 512140 366580 602580 30064 685360 380130 359200 410540 427590 458280 384760 492130 1 1 0 1 1 1 1 1 1 1 1 12078000 0 12078000 20444 1500 18794 105971 128448 128448 1 VIHLSNLPHSGYSDSAVLK Unmodified 2036.0691 0.069089203 1026 P43243;P43243-2 MATR3 Matrin-3 yes no 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 51.143 50.886 4 3.3391E-12 17531 20211116_3441_TMUAki_TMT10x_S_F3 126.07 108.16 3835600 6055900 7100.8 6602800 4577300 5538600 3598600 3678600 3736000 3972600 4471200 3571100 5652900 307060 6681400 4362900 5666200 3705600 3842900 3820800 3867700 4290500 2 2 1 2 2 2 2 2 2 2 2 2231000 3272600 0 3651500 3211900 4222800 2339800 2108900 2033700 2311200 2446400 2077000 3055100 170760 3706900 3056000 4219100 2409500 2256900 2097000 2248900 2347200 1 1 0 1 1 1 1 1 1 1 1 1604600 2783400 7100.8 2951300 1365400 1315800 1258800 1569700 1702200 1661400 2024800 1494100 2597800 136300 2974500 1307000 1447000 1296100 1585900 1723700 1618800 1943200 1 1 1 1 1 1 1 1 1 1 1 728630000 345040000 383590000 20445 1026 18795 105972;105973;105974 128449;128450 128450 2 VIHLVER Unmodified 864.51814 0.51813647 1047 P46379;P46379-2;P46379-3;P46379-4;P46379-5 BAG6 Large proline-rich protein BAG6 yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 34.795 34.864 3 0.0079782 8726 20211116_3433_TMUAki_TMT10x_P_F5 86.472 37.114 1104200 1634900 37144 1729700 1342500 1825500 1235800 1158400 1240800 1128500 1356500 1028400 1525900 129500 1759400 1286800 1838800 1259200 1210500 1266200 1103300 1305000 2 2 2 2 2 2 2 2 2 2 2 636170 908520 25350 980430 880090 1274700 723760 664700 708930 645140 784030 592530 848020 79784 999520 841480 1266700 741860 706020 724530 630880 754000 1 1 1 1 1 1 1 1 1 1 1 468030 726350 11794 749320 462360 550790 511990 493660 531830 483320 572510 435870 677850 49715 759840 445290 572070 517350 504490 541620 472460 551020 1 1 1 1 1 1 1 1 1 1 1 168000000 79030000 88965000 20446 1047 18796 105975;105976 128451;128452 128451 2 VIHSILNSPYAK Unmodified 1340.7452 0.74523587 778 P23258;Q9NRH3 TUBG1;TUBG2 Tubulin gamma-1 chain;Tubulin gamma-2 chain yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 52.241 51.994 3 1.3712E-07 17947 20211116_3441_TMUAki_TMT10x_S_F3 131.43 114.86 3995800 6651900 91547 7069400 5484300 6392600 4357600 6174600 5889100 5291800 5466400 3721200 6208500 437450 7172300 5235800 6549200 4526400 6262500 5909100 5204600 5286300 2 2 2 2 2 2 2 2 2 2 2 1788600 2753000 52314 2888400 3396300 4475300 2450200 2809800 2464000 2287600 2390800 1665700 2569400 219560 2960800 3235900 4423800 2535200 2925200 2503500 2255700 2308600 1 1 1 1 1 1 1 1 1 1 1 2207200 3898900 39233 4181000 2087900 1917300 1907400 3364800 3425100 3004200 3075600 2055400 3639100 217890 4211500 1999900 2125400 1991200 3337300 3405600 2948900 2977700 1 1 1 1 1 1 1 1 1 1 1 320270000 189870000 130400000 20447 778 18797 105977;105978 128453;128454 128454 2 VIIIGSGVSGLAAAR Unmodified 1382.8245 0.82454882 265 O60341;O60341-2 KDM1A Lysine-specific histone demethylase 1A yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 64.817 64.784 2 9.497E-31 20945 20211116_3442_TMUAki_TMT10x_S_F4 217.74 165.06 11441000 20010000 342850 19767000 14379000 18825000 13496000 14622000 13733000 12975000 15130000 10655000 18670000 1309200 20169000 13786000 19141000 13743000 15030000 14010000 12740000 14552000 2 2 2 2 2 2 2 2 2 2 2 5733100 10131000 202000 9646300 7673200 12929000 8158900 7333900 7093900 7022000 7523000 5339600 9451100 690740 9924100 7381900 12843000 8217500 7729600 7278700 6870900 7243900 1 1 1 1 1 1 1 1 1 1 1 5707700 9879400 140860 10121000 6705800 5896000 5337400 7288300 6638800 5952900 7607200 5315500 9219400 618460 10245000 6404000 6298400 5525800 7300000 6731200 5868900 7308400 1 1 1 1 1 1 1 1 1 1 1 1518200000 792790000 725410000 20448 265 18798 105979;105980;105981 128455;128456;128457 128457 3 VIILGDSGVGK Unmodified 1056.6179 0.61791009 1151 P51149 RAB7A Ras-related protein Rab-7a yes yes 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 58.839 59.463 2 5.1877E-16 19102 20211116_3435_TMUAki_TMT10x_P_F7 211.52 114.09 16370000 25789000 293010 28581000 22857000 23847000 17156000 18887000 19333000 17577000 21626000 15245000 24075000 1721100 28889000 21790000 24475000 17768000 19415000 19654000 17220000 20791000 2 2 2 2 2 2 2 2 2 2 2 8094900 12222000 109470 14091000 14595000 16098000 9751500 8955300 8789700 8285800 10109000 7538000 11411000 864190 14273000 13880000 16115000 10115000 9445600 9030900 8120000 9710700 1 1 1 1 1 1 1 1 1 1 1 8275400 13568000 183530 14490000 8261200 7749400 7404900 9932100 10543000 9290800 11517000 7706600 12664000 856940 14617000 7910800 8359500 7653000 9969000 10623000 9100300 11080000 1 1 1 1 1 1 1 1 1 1 1 1393200000 682390000 710840000 20449 1151 18799 105982;105983;105984 128458;128459;128460 128458 3 VIISAPSADAPMFVMGVNHEK Unmodified 2212.102 0.10204559 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS 6.09 2.2 3 3 4 6 7 12 11 73.293 73.346 2;3;4 1.703E-68 23873 20211116_3446_TMUAki_TMT10x_S_F7 254.58 234.14 195090000 284610000 1347300 307390000 160530000 144170000 202300000 54050000 41509000 62286000 159980000 181650000 265650000 16072000 309530000 155000000 154920000 198040000 59749000 53468000 60493000 150660000 29 29 18 29 29 29 29 29 29 29 29 95861000 133340000 801140 145220000 75672000 89513000 103410000 27057000 21135000 31447000 75802000 89260000 124460000 8129900 146480000 73285000 93223000 100890000 30793000 27041000 30532000 71431000 16 16 10 16 16 16 16 16 16 16 16 99227000 151270000 546140 162160000 84856000 54661000 98897000 26993000 20374000 30839000 84182000 92390000 141190000 7941800 163050000 81711000 61694000 97151000 28956000 26427000 29961000 79232000 13 13 8 13 13 13 13 13 13 13 13 61766000000 31867000000 29899000000 20450 489 18800 105985;105986;105987;105988;105989;105990;105991;105992;105993;105994;105995;105996;105997;105998;105999;106000;106001;106002;106003;106004;106005;106006;106007 128461;128462;128463;128464;128465;128466;128467;128468;128469;128470;128471;128472;128473;128474;128475;128476;128477;128478;128479;128480;128481;128482;128483;128484;128485;128486;128487;128488;128489;128490;128491;128492;128493;128494 128487 34 VIISAPSADAPMFVMGVNHEK 2 Oxidation (M) 2244.0919 0.091874835 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 2 0 By MS/MS By MS/MS 6.27 1.26 3 4 7 7 5 13 13 54.221 54.422 2;3;4;5 1.3674E-19 18771 20211116_3446_TMUAki_TMT10x_S_F7 153.04 145.15 147100000 247590000 1756100 222960000 178240000 323920000 170820000 293470000 294170000 262870000 218270000 136980000 230940000 12369000 230700000 170790000 323070000 177480000 299000000 291170000 257990000 212910000 39 39 24 39 39 39 39 39 39 39 39 98262000 163190000 995740 150900000 130080000 251450000 120010000 179520000 177690000 161600000 137400000 91497000 152230000 7855700 156320000 124510000 248340000 124050000 185610000 176810000 158560000 133790000 24 24 14 24 24 24 24 24 24 24 24 48841000 84400000 760310 72055000 48159000 72466000 50808000 113950000 116480000 101270000 80873000 45480000 78708000 4513300 74386000 46275000 74731000 53432000 113380000 114360000 99429000 79117000 15 15 10 15 15 15 15 15 15 15 15 128310000000 66343000000 61970000000 20451 489 18800 106008;106009;106010;106011;106012;106013;106014;106015;106016;106017;106018;106019;106020;106021;106022;106023;106024;106025;106026;106027;106028;106029;106030;106031;106032;106033 128495;128496;128497;128498;128499;128500;128501;128502;128503;128504;128505;128506;128507;128508;128509;128510;128511;128512;128513;128514;128515;128516;128517;128518;128519;128520;128521;128522;128523;128524;128525;128526;128527;128528;128529;128530;128531;128532;128533;128534;128535 128528 389;390 41 VIISAPSADAPMFVMGVNHEK Oxidation (M) 2228.097 0.096960213 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 1 0 By MS/MS By MS/MS 6.57 1.47 1 4 6 9 8 16 12 62.625 62.863 2;3;4 1.8301E-26 18611 20211116_3434_TMUAki_TMT10x_P_F6 167.99 160.21 187180000 300210000 3406700 288910000 179340000 244110000 208920000 124460000 103550000 140550000 193480000 174300000 280080000 17277000 294860000 172880000 248760000 207110000 133060000 113150000 136610000 183860000 33 33 22 33 33 33 33 33 33 33 33 100400000 156410000 2031900 150420000 101210000 163540000 118690000 68160000 55815000 76166000 101560000 93495000 145930000 9747000 154070000 97596000 163650000 117530000 74354000 61157000 74058000 96552000 18 18 12 18 18 18 18 18 18 18 18 86778000 143790000 1374800 138490000 78129000 80577000 90231000 56301000 47738000 64384000 91921000 80808000 134160000 7530200 140790000 75286000 85113000 89577000 58710000 51992000 62548000 87305000 15 15 10 15 15 15 15 15 15 15 15 93680000000 59643000000 34037000000 20452 489 18800 106034;106035;106036;106037;106038;106039;106040;106041;106042;106043;106044;106045;106046;106047;106048;106049;106050;106051;106052;106053;106054;106055;106056;106057;106058;106059;106060;106061 128536;128537;128538;128539;128540;128541;128542;128543;128544;128545;128546;128547;128548;128549;128550;128551;128552;128553;128554;128555;128556;128557;128558;128559;128560;128561;128562;128563;128564;128565;128566;128567;128568;128569;128570 128538 389;390 35 VIISAPSADAPMFVMGVNHEKYDNSLK 2 Oxidation (M) 2964.4361 0.43612926 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 2 1 By MS/MS By MS/MS 7.07 1.76 2 2 9 16 6 23 64.767 64.889 4;5 2.8666E-33 30540 20211116_3446_TMUAki_TMT10x_S_F7 170.55 162.25 57054000 107750000 1590100 69263000 89985000 240010000 85230000 369060000 337670000 258320000 153650000 53135000 100400000 5109400 75931000 86253000 236870000 94516000 364970000 325930000 256850000 153560000 38 40 24 40 39 40 40 39 40 40 39 35192000 62830000 710860 38273000 54133000 183970000 60001000 234120000 209170000 159160000 93778000 32772000 58535000 2666000 42958000 52091000 179550000 65173000 233270000 202180000 158540000 94037000 7 7 4 7 7 7 7 7 7 7 7 21862000 44918000 879280 30990000 35852000 56042000 25229000 134930000 128500000 99155000 59875000 20362000 41861000 2443400 32973000 34162000 57319000 29343000 131710000 123760000 98314000 59522000 31 33 20 33 32 33 33 32 33 33 32 50546000000 26618000000 23928000000 20453 489 18801 106062;106063;106064;106065;106066;106067;106068;106069;106070;106071;106072;106073;106074;106075;106076;106077;106078;106079;106080;106081;106082;106083;106084;106085;106086;106087;106088;106089;106090 128571;128572;128573;128574;128575;128576;128577;128578;128579;128580;128581;128582;128583;128584;128585;128586;128587;128588;128589;128590;128591;128592;128593;128594;128595;128596;128597;128598;128599;128600;128601;128602;128603;128604;128605;128606;128607;128608;128609;128610 128587 389;390 40 VIISAPSADAPMFVMGVNHEKYDNSLK Oxidation (M) 2948.4412 0.44121464 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 1 1 By MS/MS By MS/MS 6 2.57 2 1 4 3 5 5 66.887 67.091 4;5 8.0021E-33 19973 20211116_3428_TMUAki_TMT10x_P_F1 162.11 154.83 51404000 103050000 794670 44336000 73058000 168650000 87533000 117790000 63538000 107820000 78639000 47865000 95940000 4061100 50929000 70431000 162850000 87169000 122030000 66221000 105440000 75391000 13 13 7 12 13 12 12 13 12 12 12 35023000 69847000 596890 30199000 46714000 138300000 71851000 79185000 47562000 77589000 56704000 32610000 65026000 2387800 35225000 45428000 132900000 70815000 83445000 49773000 75844000 54418000 6 6 2 6 6 6 6 6 6 6 6 16381000 33206000 197780 14137000 26344000 30345000 15681000 38602000 15976000 30230000 21934000 15254000 30914000 1673300 15703000 25003000 29951000 16354000 38581000 16448000 29597000 20973000 7 7 5 6 7 6 6 7 6 6 6 26012000000 16504000000 9508200000 20454 489 18801 106091;106092;106093;106094;106095;106096;106097;106098;106099;106100 128611;128612;128613;128614;128615;128616;128617;128618;128619;128620;128621;128622;128623 128611 389;390 13 VIISAPSADAPMFVMGVNHEKYDNSLK Unmodified 2932.4463 0.44630002 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 1 By MS/MS By MS/MS 5 3.29 2 1 2 3 2 70.022 70.06 4;5 3.0432E-77 23583 20211116_3435_TMUAki_TMT10x_P_F7 242.9 231.48 22478000 43907000 148960 20517000 33672000 46783000 44470000 16255000 10042000 19544000 28798000 20930000 40883000 2111600 22976000 32564000 45353000 43477000 18167000 12388000 18952000 27200000 6 6 5 6 6 6 6 6 6 6 6 15489000 30157000 75954 13609000 21085000 37001000 35279000 10999000 6825500 13519000 19323000 14422000 28078000 1385700 15402000 20575000 35667000 34162000 12571000 8632400 13099000 18253000 4 4 3 4 4 4 4 4 4 4 4 6989100 13750000 73005 6908200 12587000 9781700 9190300 5256600 3216000 6024900 9475300 6508100 12805000 725890 7573800 11988000 9686100 9314800 5595900 3755300 5852600 8946700 2 2 2 2 2 2 2 2 2 2 2 7919100000 5255500000 2663600000 20455 489 18801 106101;106102;106103;106104;106105 128624;128625;128626;128627;128628;128629 128625 6 VIKDFMIQGGDFTR Oxidation (M) 1641.8185 0.81847717 779 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 1 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 58.288 58.589 3 4.4523E-05 17087 20211116_3447_TMUAki_TMT10x_S_F8 98.582 87.677 12791000 26397000 0 15403000 25504000 56853000 23154000 73549000 69726000 59528000 39605000 11909000 24591000 906200 17110000 24389000 55737000 25051000 73517000 67827000 58716000 39138000 4 4 0 4 4 4 4 4 4 4 4 6661300 13724000 0 8349200 15767000 39807000 15990000 37401000 36468000 30890000 19306000 6201800 12786000 606660 9367600 15119000 38559000 16841000 37953000 35595000 30437000 19155000 2 2 0 2 2 2 2 2 2 2 2 6130200 12674000 0 7053600 9737400 17046000 7164600 36148000 33258000 28638000 20300000 5707600 11805000 299540 7742200 9270300 17178000 8209600 35564000 32233000 28279000 19983000 2 2 0 2 2 2 2 2 2 2 2 2224900000 1350200000 874620000 20456 779 18802 106106;106107;106108;106109 128630;128631;128632;128633;128634 128633 917 5 VILDLTPNYR Unmodified 1202.6659 0.66592292 551 P08195;P08195-3;P08195-2;P08195-4 SLC3A2 4F2 cell-surface antigen heavy chain yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 63.564 63.774 2 2.523E-06 19131 20211116_3447_TMUAki_TMT10x_S_F8 150.36 124.79 40659000 71075000 90959 69023000 50829000 55909000 49579000 59137000 56615000 58256000 59787000 37857000 66313000 3432200 70364000 48701000 57837000 50573000 59937000 57401000 56932000 57576000 7 7 3 7 7 7 7 7 7 7 7 6095000 10935000 26938 11284000 9076300 14860000 9522300 8181500 7331400 8081500 8697800 5675200 10205000 572180 11540000 8715700 14768000 9567800 8652500 7602800 7896900 8348100 1 1 1 1 1 1 1 1 1 1 1 34564000 60140000 64021 57739000 41753000 41049000 40057000 50955000 49284000 50175000 51089000 32182000 56108000 2860000 58823000 39985000 43070000 41006000 51284000 49798000 49036000 49228000 6 6 2 6 6 6 6 6 6 6 6 1532200000 626510000 905690000 20457 551 18803 106110;106111;106112;106113 128635;128636;128637;128638;128639;128640;128641;128642 128640 8 VILGSEAAQQHPEEVR Unmodified 1761.901 0.90096124 3013 Q9NY33;Q9NY33-4;Q9NY33-2 DPP3 Dipeptidyl peptidase 3 yes no 0 0 0 0 By MS/MS By MS/MS 2.25 0.829 1 5 1 1 3 5 35.671 35.637 3 4.4445E-54 11806 20211116_3441_TMUAki_TMT10x_S_F3 276.47 240.18 3499500 6055700 33980 6558700 6797500 6958400 4107200 6892400 6984300 5421200 6169000 3258200 5652500 313320 6661400 6448700 7062600 4395900 6967000 6950500 5355300 5976200 10 10 4 10 10 10 10 10 10 10 10 1888900 2900900 0 3235700 5098000 5420700 2825300 3332200 3339400 2629600 2965300 1758400 2708100 156270 3310000 4828100 5340600 3000600 3472300 3361500 2597100 2872100 2 2 0 2 2 2 2 2 2 2 2 1610600 3154700 33980 3323000 1699500 1537700 1281900 3560200 3644900 2791700 3203700 1499800 2944300 157050 3351500 1620600 1722000 1395200 3494700 3589000 2758200 3104100 8 8 4 8 8 8 8 8 8 8 8 1108600000 781510000 327120000 20458 3013 18804 106114;106115;106116;106117;106118;106119;106120;106121 128643;128644;128645;128646;128647;128648;128649;128650;128651;128652;128653;128654 128652 12 VILHLKEDQTEYLEER Unmodified 2014.0371 0.037120373 553;544 P07900;P07900-2;Q58FF6;P08238;Q58FF7 HSP90AA1;HSP90AB4P;HSP90AB1;HSP90AB3P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 no no 0 0 0 1 By MS/MS By MS/MS 4.17 1.96 4 6 9 9 5 4 8 1 19 27 50.428 50.454 2;3;4 6.1499E-61 17295 20211116_3429_TMUAki_TMT10x_P_F2 294.97 268.82 770420000 1365200000 9354900 1330000000 1167100000 1448300000 928440000 1145300000 1124700000 1083000000 1111300000 717380000 1273800000 66437000 1361100000 1113400000 1461300000 960310000 1177800000 1135100000 1060300000 1072400000 96 96 54 96 96 96 96 96 96 96 96 403140000 706270000 3565000 684780000 727340000 1046100000 575460000 595910000 601180000 562590000 568100000 375380000 658950000 35076000 705510000 693710000 1033300000 592450000 627600000 609300000 550830000 549040000 43 43 25 43 43 43 43 43 43 43 43 367280000 658970000 5789900 645230000 439810000 402130000 352980000 549350000 523480000 520390000 543200000 342000000 614840000 31361000 655580000 419730000 427960000 367860000 550240000 525790000 509430000 523390000 53 53 29 53 53 53 53 53 53 53 53 248180000000 134680000000 113500000000 20459 544;553 18805 106122;106123;106124;106125;106126;106127;106128;106129;106130;106131;106132;106133;106134;106135;106136;106137;106138;106139;106140;106141;106142;106143;106144;106145;106146;106147;106148;106149;106150;106151;106152;106153;106154;106155;106156;106157;106158;106159;106160;106161;106162;106163;106164;106165;106166;106167 128655;128656;128657;128658;128659;128660;128661;128662;128663;128664;128665;128666;128667;128668;128669;128670;128671;128672;128673;128674;128675;128676;128677;128678;128679;128680;128681;128682;128683;128684;128685;128686;128687;128688;128689;128690;128691;128692;128693;128694;128695;128696;128697;128698;128699;128700;128701;128702;128703;128704;128705;128706;128707;128708;128709;128710;128711;128712;128713;128714;128715;128716;128717;128718;128719;128720;128721;128722;128723;128724;128725;128726;128727;128728;128729;128730;128731;128732;128733;128734;128735;128736;128737;128738;128739;128740;128741;128742;128743;128744;128745;128746;128747;128748;128749;128750;128751;128752;128753 128661 99 VILHLKEDQTEYLEERR Unmodified 2170.1382 0.1382314 553;544 P07900;P07900-2;P08238;Q58FF7 HSP90AA1;HSP90AB1;HSP90AB3P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 no no 0 0 0 2 By MS/MS By MS/MS 5 1.7 2 4 5 5 5 4 2 13 14 48.978 49.088 3;4;5 1.8972E-93 13899 20211116_3431_TMUAki_TMT10x_P_F4 340.2 301.83 129940000 223160000 2484400 213760000 223570000 271910000 156080000 266250000 244250000 211430000 210590000 121010000 208200000 13672000 219610000 212810000 273290000 164570000 269350000 243430000 208760000 204190000 36 36 28 36 36 36 36 36 36 36 36 65732000 108870000 880870 106050000 141010000 199890000 99056000 134390000 121450000 105620000 101870000 61208000 101580000 6670400 109790000 134200000 196370000 103360000 139090000 121880000 104340000 98874000 19 19 13 19 19 19 19 19 19 19 19 64211000 114290000 1603500 107710000 82557000 72021000 57021000 131850000 122800000 105810000 108720000 59798000 106620000 7002100 109810000 78610000 76916000 61210000 130260000 121550000 104410000 105320000 17 17 15 17 17 17 17 17 17 17 17 54644000000 31634000000 23010000000 20460 544;553 18806 106168;106169;106170;106171;106172;106173;106174;106175;106176;106177;106178;106179;106180;106181;106182;106183;106184;106185;106186;106187;106188;106189;106190;106191;106192;106193;106194 128754;128755;128756;128757;128758;128759;128760;128761;128762;128763;128764;128765;128766;128767;128768;128769;128770;128771;128772;128773;128774;128775;128776;128777;128778;128779;128780;128781;128782;128783;128784;128785;128786;128787;128788;128789 128759 36 VILHVDQSR Unmodified 1065.5931 0.59309232 2341 Q92547 TOPBP1 DNA topoisomerase 2-binding protein 1 yes yes 0 0 0 0 By MS/MS 5 0 1 1 33.26 33.437 3 0.0078869 6910 20211116_3444_TMUAki_TMT10x_S_F5 61.765 33.882 203740 345830 139.28 379630 205820 139700 200530 259040 247560 235760 276210 189700 322820 17050 381310 197230 159800 205140 256660 250810 231210 265560 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 203740 345830 139.28 379630 205820 139700 200530 259040 247560 235760 276210 189700 322820 17050 381310 197230 159800 205140 256660 250810 231210 265560 1 1 1 1 1 1 1 1 1 1 1 5031900 0 5031900 20461 2341 18807 106195 128790 128790 1 VILKPDK Unmodified 811.51674 0.51673948 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 1 By MS/MS By MS/MS 7.75 0.433 1 3 2 2 39.983 40.324 3 0.015654 9752 20211116_3447_TMUAki_TMT10x_S_F8 72.547 19.377 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20462 1997 18808 106196;106197;106198;106199 128791;128792;128793;128794 128794 4 VILLDGSEYTCDVEKR Unmodified 1895.9299 0.92987811 3239 Q9Y2J2;Q9Y2J2-2;Q9Y2J2-4;Q9Y2J2-3 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed yes no 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 59.474 59.62 3 2.1374E-07 18586 20211116_3433_TMUAki_TMT10x_P_F5 110.97 89.739 6482900 11013000 45728 11225000 8778600 11207000 7083500 8257800 7715600 7926200 8544200 6036600 10277000 612250 11436000 8377400 11351000 7293300 8534900 7851100 7754800 8216700 2 2 2 2 2 2 2 2 2 2 2 3667800 6197000 5101.1 6071900 5798400 8344700 4635900 4941500 4719600 4690600 4820200 3415100 5782000 338680 6237200 5530900 8284400 4765800 5188400 4801300 4591400 4646700 1 1 1 1 1 1 1 1 1 1 1 2815200 4815500 40627 5153000 2980100 2861900 2447600 3316300 2996000 3235700 3724000 2621500 4494600 273570 5198800 2846600 3067100 2527500 3346500 3049800 3163400 3569900 1 1 1 1 1 1 1 1 1 1 1 525670000 245910000 279760000 20463 3239 18809 106200;106201 128795;128796 128795 2 VILQDFTGVPAVVDFAAMR Oxidation (M) 2064.0714 0.071397389 758 P21399 ACO1 Cytoplasmic aconitate hydratase yes yes 0 0 1 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 80.291 80.304 3 0.00016089 26538 20211116_3436_TMUAki_TMT10x_P_F8 65.022 54.206 1870500 3084600 104980 2513200 2086900 2881600 2205200 1826100 1793800 2129400 2277600 1742400 2876100 255950 2609800 2010300 2889200 2217900 1919000 1860000 2067200 2182100 2 2 2 2 2 2 2 2 2 2 2 1055500 1592400 54557 1188100 1006200 1955500 1165800 942050 991110 1174600 1217700 983140 1484400 137660 1252100 972080 1922000 1168700 1015900 1024000 1137600 1167700 1 1 1 1 1 1 1 1 1 1 1 815090 1492200 50422 1325100 1080700 926190 1039400 884100 802660 954870 1059800 759300 1391700 118290 1357700 1038200 967200 1049100 903130 836050 929660 1014400 1 1 1 1 1 1 1 1 1 1 1 1855100000 1031600000 823470000 20464 758 18810 106202;106203;106204;106205 128797;128798 128797 876 2 VILQPDVHPGNCWAFQGPQGFAVVR Unmodified 2791.4017 0.40167351 3112 Q9UH99;Q9UH99-2;Q9UH99-3 SUN2 SUN domain-containing protein 2 yes no 0 0 0 0 By MS/MS 3 0 1 1 75.83 75.643 3 6.1837E-08 27528 20211116_3441_TMUAki_TMT10x_S_F3 90.308 82.087 4925000 9104800 76671 7612700 6875100 5198600 6525700 3981700 3257200 3910300 5645700 4586200 8490100 507080 7835500 6588000 5417600 6536400 4107600 3541400 3821900 5372300 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4925000 9104800 76671 7612700 6875100 5198600 6525700 3981700 3257200 3910300 5645700 4586200 8490100 507080 7835500 6588000 5417600 6536400 4107600 3541400 3821900 5372300 3 3 3 3 3 3 3 3 3 3 3 221440000 0 221440000 20465 3112 18811 106206 128799;128800;128801 128800 3 VILTSPLIRDELEK Unmodified 1624.94 0.93997251 2556 Q96SI9;Q96SI9-2 STRBP Spermatid perinuclear RNA-binding protein yes no 0 0 0 1 By MS/MS 6 0 1 1 67.11 67.043 3 7.8965E-10 20840 20211116_3445_TMUAki_TMT10x_S_F6 117.08 95.035 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20466 2556 18812 106207 128802 128802 1 VILTSPLIRDELEKK Unmodified 1753.0349 0.034935528 2556 Q96SI9;Q96SI9-2 STRBP Spermatid perinuclear RNA-binding protein yes no 0 0 0 2 By matching By MS/MS 7.5 0.5 1 1 1 1 61.249 61.607 4 5.7752E-14 18354 20211116_3447_TMUAki_TMT10x_S_F8 145.86 120.8 8383300 13627000 93836 12557000 9370500 9795300 8372300 11203000 10669000 10856000 11646000 7806300 12711000 796310 12845000 8965500 10181000 8615700 11309000 10788000 10617000 11204000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8383300 13627000 93836 12557000 9370500 9795300 8372300 11203000 10669000 10856000 11646000 7806300 12711000 796310 12845000 8965500 10181000 8615700 11309000 10788000 10617000 11204000 2 2 2 2 2 2 2 2 2 2 2 1353700000 409090000 944570000 20467 2556 18813 106208;106209 128803;128804 128803 2 VIMDYESLEK Unmodified 1225.59 0.59004036 469 P00491 PNP Purine nucleoside phosphorylase yes yes 0 0 0 0 By MS/MS 4 0 1 1 63.986 64.092 2 8.5429E-05 20181 20211116_3431_TMUAki_TMT10x_P_F4 125.97 77.173 3033900 4597100 0 5308200 5120000 5452600 3699500 2349600 2363600 2384300 3615400 2824700 4292300 268630 5367200 4872800 5476100 3785500 2546500 2507400 2327200 3448900 1 1 0 1 1 1 1 1 1 1 1 3033900 4597100 0 5308200 5120000 5452600 3699500 2349600 2363600 2384300 3615400 2824700 4292300 268630 5367200 4872800 5476100 3785500 2546500 2507400 2327200 3448900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 193580000 193580000 0 20468 469 18814 106210 128805 128805 1 VIMVTGDHPITAK Oxidation (M) 1396.7384 0.73843593 497;1224 P05023;P05023-3;P05023-4;P05023-2;P13637;P13637-2;P13637-3;P50993;Q13733;P20648;P54707;P54707-2 ATP1A1;ATP1A3;ATP1A2;ATP1A4;ATP4A;ATP12A Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4;Potassium-transporting ATPase alpha chain 1;Potassium-transporting ATPase alpha chain 2 no no 0 0 1 0 By MS/MS 6 0.816 1 1 1 3 41.463 41.771 3 6.3543E-05 10535 20211116_3445_TMUAki_TMT10x_S_F6 95.183 73.31 2732000 4379100 17313 5381400 2367300 2314100 2444700 2776700 2877000 2489400 3539600 2543800 4090000 232020 5373200 2272500 2557100 2489100 2791200 2931400 2443100 3394000 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2732000 4379100 17313 5381400 2367300 2314100 2444700 2776700 2877000 2489400 3539600 2543800 4090000 232020 5373200 2272500 2557100 2489100 2791200 2931400 2443100 3394000 4 4 2 4 4 4 4 4 4 4 4 191110000 0 191110000 20469 497;1224 18815 106211;106212;106213 128806;128807;128808;128809 128807 402 4 VIMVTGDHPITAK Unmodified 1380.7435 0.74352131 497;1224 P05023;P05023-3;P05023-4;P05023-2;P13637;P13637-2;P13637-3;P50993;Q13733;P20648;P54707;P54707-2 ATP1A1;ATP1A3;ATP1A2;ATP1A4;ATP4A;ATP12A Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4;Potassium-transporting ATPase alpha chain 1;Potassium-transporting ATPase alpha chain 2 no no 0 0 0 0 By MS/MS 7 0 1 1 46.67 47.161 3 0.0066306 14717 20211116_3446_TMUAki_TMT10x_S_F7 59.607 41.876 3756600 6503100 88.614 7278800 4276000 2662600 2879600 4087800 3883600 3201500 4684100 3497800 6071000 318810 7301700 4065000 3029200 3025000 4057700 3935400 3163300 4493800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3756600 6503100 88.614 7278800 4276000 2662600 2879600 4087800 3883600 3201500 4684100 3497800 6071000 318810 7301700 4065000 3029200 3025000 4057700 3935400 3163300 4493800 1 1 1 1 1 1 1 1 1 1 1 250200000 0 250200000 20470 497;1224 18815 106214 128810 128810 1 VINAAHSFYNGTTTLPISDEDRTPR Unmodified 2774.3624 0.36237069 1128 P49915;P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 0 1 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 53.215 53.483 4 4.4782E-60 15013 20211116_3447_TMUAki_TMT10x_S_F8 222.57 213.48 19367000 33927000 124380 32231000 27338000 38734000 23764000 29184000 25974000 25655000 26466000 18033000 31651000 1484400 33098000 26126000 38844000 24360000 30049000 26345000 25202000 25515000 8 8 4 8 8 8 8 8 8 8 8 13219000 22523000 67753 22008000 20137000 32661000 18414000 19665000 17035000 17289000 17153000 12309000 21014000 951010 22648000 19267000 32324000 18726000 20578000 17395000 16983000 16543000 5 5 3 5 5 5 5 5 5 5 5 6148000 11404000 56631 10223000 7201600 6073300 5350200 9519400 8938900 8366600 9312900 5724400 10637000 533400 10450000 6859300 6520400 5634800 9470300 8950000 8218700 8972200 3 3 1 3 3 3 3 3 3 3 3 7759300000 4601900000 3157400000 20471 1128 18816 106215;106216;106217;106218;106219 128811;128812;128813;128814;128815;128816;128817;128818 128818 8 VINEEYK Unmodified 893.44945 0.44944778 1854;1553 Q16576;Q16576-2;Q09028;Q09028-3;Q09028-2 RBBP7;RBBP4 Histone-binding protein RBBP7;Histone-binding protein RBBP4 no no 0 0 0 0 By MS/MS By MS/MS 3.25 0.433 3 1 2 2 38.897 38.87 2 0.017914 10628 20211116_3430_TMUAki_TMT10x_P_F3 85.064 35.025 3252800 5531800 21623 5673900 3498500 3001900 3463400 2498500 2987100 2658000 4198600 3028700 5162300 276790 5738300 3353900 3211700 3500200 2570500 3102700 2589300 4012700 4 4 1 4 4 4 4 4 4 4 4 496000 794490 0 777720 733610 752240 512700 314280 340750 347910 560550 461800 741280 42329 794210 697730 758060 526280 342650 361980 338410 533940 2 2 0 2 2 2 2 2 2 2 2 2756800 4737300 21623 4896100 2764900 2249700 2950700 2184300 2646400 2310100 3638100 2566900 4421000 234460 4944100 2656200 2453600 2973900 2227900 2740700 2250900 3478800 2 2 1 2 2 2 2 2 2 2 2 96517000 6621300 89896000 20472 1854;1553 18817 106220;106221;106222;106223 128819;128820;128821;128822 128821 4 VINEPTAAALAYGLDK Unmodified 1644.8723 0.87228688 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5.94 1.27 3 4 4 5 2 9 9 73.279 73.313 2;3 1.1109E-59 23391 20211116_3445_TMUAki_TMT10x_S_F6 279.29 248.96 129570000 203580000 950110 236040000 134470000 156620000 137640000 103200000 104120000 111710000 147480000 120640000 190080000 10743000 237320000 129020000 163250000 138410000 107870000 108930000 108750000 140930000 22 22 10 22 22 22 22 22 22 22 22 63455000 98616000 346770 113040000 68632000 104530000 72537000 53258000 53800000 56369000 72079000 59079000 92073000 4847900 114170000 65874000 105860000 72793000 56830000 56200000 54925000 68966000 11 11 5 11 11 11 11 11 11 11 11 66117000 104960000 603340 123000000 65842000 52095000 65106000 49938000 50319000 55342000 75401000 61565000 98010000 5895000 123150000 63141000 57396000 65620000 51044000 52728000 53827000 71960000 11 11 5 11 11 11 11 11 11 11 11 33858000000 17155000000 16704000000 20473 972 18818 106224;106225;106226;106227;106228;106229;106230;106231;106232;106233;106234;106235;106236;106237;106238;106239;106240;106241 128823;128824;128825;128826;128827;128828;128829;128830;128831;128832;128833;128834;128835;128836;128837;128838;128839;128840;128841;128842;128843;128844;128845;128846 128843 24 VINEPTAAALAYGLDKSEDK Unmodified 2104.0688 0.068814432 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 6.12 1.39 2 2 3 4 12 2 10 15 49.624 49.681 3;4 4.1664E-53 21259 20211116_3434_TMUAki_TMT10x_P_F6 238.03 218.99 222160000 387170000 991690 330940000 285430000 322910000 247660000 215520000 239490000 247670000 281670000 206860000 361060000 19681000 341470000 272760000 327050000 252940000 225510000 245490000 240570000 270410000 26 26 16 26 26 26 26 26 26 26 26 94408000 158030000 367140 136990000 123340000 198900000 112900000 87480000 98055000 99558000 112260000 87905000 147380000 8496300 142160000 118020000 196300000 114610000 94929000 100910000 96736000 107850000 10 10 8 10 10 10 10 10 10 10 10 127750000 229140000 624540 193950000 162090000 124010000 134760000 128040000 141430000 148120000 169410000 118950000 213680000 11185000 199310000 154740000 130740000 138330000 130580000 144580000 143830000 162560000 16 16 8 16 16 16 16 16 16 16 16 57652000000 31631000000 26021000000 20474 972 18819 106242;106243;106244;106245;106246;106247;106248;106249;106250;106251;106252;106253;106254;106255;106256;106257;106258;106259;106260;106261;106262;106263;106264;106265;106266 128847;128848;128849;128850;128851;128852;128853;128854;128855;128856;128857;128858;128859;128860;128861;128862;128863;128864;128865;128866;128867;128868;128869;128870;128871;128872;128873;128874;128875 128851 29 VINEPTAAAMAYGLHK Unmodified 1684.8607 0.86067633 1081 P48723 HSPA13 Heat shock 70 kDa protein 13 yes yes 0 0 0 0 By MS/MS 8 0 1 1 58.362 58.527 3 0.045064 17551 20211116_3436_TMUAki_TMT10x_P_F8 37.042 19.553 6766800 10783000 99318 11376000 10249000 13997000 9186900 8709100 7877500 7930900 9288400 6301300 10064000 702340 11603000 9806200 13978000 9333600 9098400 8121400 7777800 8916500 1 1 1 1 1 1 1 1 1 1 1 6766800 10783000 99318 11376000 10249000 13997000 9186900 8709100 7877500 7930900 9288400 6301300 10064000 702340 11603000 9806200 13978000 9333600 9098400 8121400 7777800 8916500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 348430000 348430000 0 20475 1081 18820 106267 128876 128876 1 VINIDFRDPEESKWK Unmodified 1874.9527 0.95266246 1070 P48147 PREP Prolyl endopeptidase yes yes 0 0 0 2 By MS/MS By MS/MS 7 0 2 1 1 61.253 61.856 4 0.036861 20661 20211116_3446_TMUAki_TMT10x_S_F7 45.14 23.337 18457000 31908000 156610 29151000 24599000 30206000 23120000 22500000 18785000 20000000 25090000 17186000 29764000 1655600 29950000 23552000 30534000 23395000 23191000 19524000 19636000 24009000 4 4 1 4 4 4 4 4 4 4 4 9865700 17060000 156610 15009000 14364000 21967000 14653000 13545000 10650000 11357000 13586000 9187000 15911000 1022200 15561000 13789000 21760000 14724000 14132000 11114000 11182000 13015000 2 2 1 2 2 2 2 2 2 2 2 8591500 14848000 0 14142000 10235000 8239300 8467500 8954800 8135000 8643000 11505000 7998700 13852000 633450 14389000 9762700 8773800 8671000 9059200 8410100 8454100 10994000 2 2 0 2 2 2 2 2 2 2 2 1530000000 1009100000 520870000 20476 1070 18821 106268;106269 128877;128878 128877 2 VINQILTEMDGMSTK Unmodified 1678.827 0.82699294 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 By MS/MS By MS/MS 7.25 0.433 3 1 2 2 79.763 79.776 2;3 1.3472E-06 27763 20211116_3435_TMUAki_TMT10x_P_F7 95.428 81.399 4399700 7773000 216170 8041400 4790100 5269300 6790800 3819200 3877600 4053400 5526700 4098200 7254000 571690 8143200 4656300 5506500 6693400 3963300 4130800 3949100 5280400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4399700 7773000 216170 8041400 4790100 5269300 6790800 3819200 3877600 4053400 5526700 4098200 7254000 571690 8143200 4656300 5506500 6693400 3963300 4130800 3949100 5280400 1 1 1 1 1 1 1 1 1 1 1 947720000 0 947720000 20477 1235 18822 106270;106271;106272;106273 128879;128880;128881 128879 3 VINQYQVVKPTAER Unmodified 1643.8995 0.89950468 1729 Q14694;Q14694-3;Q14694-2 USP10 Ubiquitin carboxyl-terminal hydrolase 10 yes no 0 0 0 1 By MS/MS By MS/MS 8 0 3 2 1 42.856 42.989 3 2.6645E-24 11255 20211116_3436_TMUAki_TMT10x_P_F8 179.39 160.18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20478 1729 18823 106274;106275;106276 128882;128883;128884 128883 3 VIPAADLSQQISTAGTEASGTGNMK Oxidation (M) 2462.1959 0.19588221 620 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 1 0 By MS/MS By MS/MS 6 0 3 1 2 63.378 63.37 3;4 1.0927E-07 19317 20211116_3445_TMUAki_TMT10x_S_F6 83.064 70.262 7346800 13022000 137590 12578000 8540000 9133400 7638600 9647100 8608800 9042400 10496000 6841600 12149000 746610 12812000 8173700 9528500 7825400 9764500 8782500 8856200 10066000 3 3 2 3 3 3 3 3 3 3 3 2322900 3699600 0 3609600 2692400 4327800 3142200 2946600 2551700 2673800 3016600 2162800 3451800 190330 3699500 2592400 4333600 3145400 3057500 2638200 2622700 2895600 1 1 0 1 1 1 1 1 1 1 1 5023900 9322100 137590 8968900 5847500 4805600 4496500 6700500 6057100 6368600 7478900 4678700 8697200 556280 9112400 5581300 5195000 4679900 6707000 6144200 6233600 7170600 2 2 2 2 2 2 2 2 2 2 2 1500200000 532510000 967670000 20479 620 18824 106277;106278;106279 128885;128886;128887 128887 634 3 VIPAADLSQQISTAGTEASGTGNMK Unmodified 2446.201 0.20096759 620 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 By MS/MS 6 0 1 1 67.264 67.238 3 0.050556 20531 20211116_3434_TMUAki_TMT10x_P_F6 39.593 29.67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20480 620 18824 106280 128888 128888 1 VIPELNGK Unmodified 868.50182 0.5018177 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 2 3 51.756 51.895 2 0.00042436 14517 20211116_3445_TMUAki_TMT10x_S_F6 159.04 87.019 69891000 113600000 1833600 113480000 89963000 97720000 79359000 80292000 84106000 74213000 92870000 65090000 106000000 7784400 115540000 86105000 100130000 81198000 82332000 85666000 72730000 89317000 9 9 9 9 9 9 9 9 9 9 9 29094000 46219000 880120 44993000 52902000 60052000 35940000 33429000 34847000 30482000 37492000 27096000 43123000 3565800 46212000 50352000 59650000 37309000 35244000 35593000 29892000 36085000 4 4 4 4 4 4 4 4 4 4 4 40797000 67385000 953440 68487000 37061000 37667000 43418000 46863000 49259000 43730000 55378000 37993000 62882000 4218600 69330000 35754000 40481000 43889000 47089000 50074000 42838000 53232000 5 5 5 5 5 5 5 5 5 5 5 5636100000 2953300000 2682700000 20481 489 18825 106281;106282;106283;106284;106285 128889;128890;128891;128892;128893;128894;128895;128896;128897 128897 9 VIPELNGKLTGMAFRVPTANVSVVDLTCR Oxidation (M) 3172.6737 0.67367419 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 1 2 By MS/MS 5 0 1 1 76.163 76.174 4 0.0040893 24284 20211116_3444_TMUAki_TMT10x_S_F5 43.807 33.264 1536100 2671400 31438 2298300 5772200 1624200 1940600 2475400 1768200 1949300 2658000 1430500 2491300 215980 2360900 5440300 1715300 2163500 2458100 1838000 1925500 2536500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1536100 2671400 31438 2298300 5772200 1624200 1940600 2475400 1768200 1949300 2658000 1430500 2491300 215980 2360900 5440300 1715300 2163500 2458100 1838000 1925500 2536500 1 1 1 1 1 1 1 1 1 1 1 233210000 0 233210000 20482 489 18826 106286 128898 128898 388 1 VIPEYCR Unmodified 935.45349 0.4534873 1072 P48444 ARCN1 Coatomer subunit delta yes yes 0 0 0 0 By MS/MS 4 0 1 1 38.51 38.691 2 0.027421 10208 20211116_3442_TMUAki_TMT10x_S_F4 81.381 64.454 497920 834640 25986 947320 519540 394340 497340 579010 634890 470640 678780 463800 779230 65802 950190 499170 439990 509890 576140 641430 464110 653430 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 497920 834640 25986 947320 519540 394340 497340 579010 634890 470640 678780 463800 779230 65802 950190 499170 439990 509890 576140 641430 464110 653430 1 1 1 1 1 1 1 1 1 1 1 10997000 0 10997000 20483 1072 18827 106287 128899 128899 1 VIPGAAEK Unmodified 783.44905 0.44905385 1752 Q15019;Q15019-2 SEPT2 Septin-2 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 39.044 39.224 2 0.018594 10679 20211116_3433_TMUAki_TMT10x_P_F5 69.105 15.939 901660 1354100 0 1661200 846080 677340 968950 941260 1156500 791720 1311700 839480 1264700 67923 1658300 813960 756650 982220 939210 1173800 779400 1260600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 901660 1354100 0 1661200 846080 677340 968950 941260 1156500 791720 1311700 839480 1264700 67923 1658300 813960 756650 982220 939210 1173800 779400 1260600 1 1 0 1 1 1 1 1 1 1 1 10201000 0 10201000 20484 1752 18828 106288;106289 128900;128901 128900 2 VIPLDRDNK Unmodified 1068.5928 0.59275797 1847 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 37.251 37.317 3 0.00060009 8636 20211116_3444_TMUAki_TMT10x_S_F5 102.06 74.947 1332100 2094200 29605 2209600 1588200 1399000 1504700 1168900 1199800 1106800 1616000 1240500 1954600 141620 2233900 1522600 1470000 1521200 1198200 1248700 1083600 1546000 2 2 2 2 2 2 2 2 2 2 2 401940 584960 14634 662130 590660 650350 471350 313480 335450 319040 461130 374360 546120 49606 669860 564240 655690 480140 335890 351670 311370 440950 1 1 1 1 1 1 1 1 1 1 1 930160 1509300 14971 1547500 997580 748600 1033400 855420 864380 787800 1154900 866190 1408500 92013 1564100 958330 814300 1041100 862320 897060 772190 1105100 1 1 1 1 1 1 1 1 1 1 1 79188000 12429000 66759000 20485 1847 18829 106290;106291 128902;128903 128903 2 VIPPGVR Unmodified 736.45956 0.45955895 1967 Q69YN4;Q69YN4-4;Q69YN4-2;Q69YN4-3 KIAA1429 Protein virilizer homolog yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 35.602 36.03 2 0.029047 8265 20211116_3436_TMUAki_TMT10x_P_F8 80.498 68.009 675340 1038400 9229.6 1070400 962710 1032300 769380 658790 674670 612500 866460 628880 969070 68617 1089200 918790 1045600 787590 687280 697310 600100 829900 3 3 3 3 3 3 3 3 3 3 3 473420 705120 8266.4 734480 751440 845760 564860 471880 483580 441750 593470 440870 658070 50848 748880 716320 846340 580200 497750 499410 432680 569100 2 2 2 2 2 2 2 2 2 2 2 201920 333290 963.15 335930 211270 186590 204520 186910 191100 170740 272990 188010 311010 17769 340290 202470 199300 207390 189540 197900 167420 260810 1 1 1 1 1 1 1 1 1 1 1 40978000 21377000 19602000 20486 1967 18830 106292;106293;106294 128904;128905;128906 128905 3 VIPSPFK Unmodified 786.46398 0.46397563 915 P34897;P34897-3;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 57.494 57.336 2 0.023524 17303 20211116_3440_TMUAki_TMT10x_S_F2 84.244 43.323 23511000 39230000 1072800 38481000 32317000 38623000 24224000 35179000 33949000 31130000 36293000 21899000 36603000 3072400 39312000 30849000 39261000 25296000 35821000 34195000 30570000 34938000 5 5 5 5 5 5 5 5 5 5 5 7740500 12100000 269050 11931000 13942000 18908000 7827600 10125000 10066000 8896700 10948000 7209200 11290000 979340 12288000 13231000 18634000 8328900 10701000 10173000 8739600 10534000 2 2 2 2 2 2 2 2 2 2 2 15770000 27131000 803800 26550000 18375000 19715000 16397000 25054000 23884000 22233000 25345000 14690000 25314000 2093000 27024000 17618000 20626000 16967000 25120000 24022000 21830000 24404000 3 3 3 3 3 3 3 3 3 3 3 1687300000 1059500000 627770000 20487 915 18831 106295;106296;106297;106298 128907;128908;128909;128910;128911;128912 128909 6 VIPVTSR Unmodified 770.46504 0.46503826 731 P19387 POLR2C DNA-directed RNA polymerase II subunit RPB3 yes yes 0 0 0 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 32.896 33.207 2 0.019392 8459 20211116_3435_TMUAki_TMT10x_P_F7 88.643 51.614 706580 1213600 5898.4 1110500 930640 931260 783540 499960 573350 513360 827850 657910 1132000 63188 1137500 888740 950070 795970 530490 601510 500830 790720 5 5 2 5 5 5 5 5 5 5 5 421250 711560 0 657240 629920 690870 449870 319420 370850 319610 502670 392190 663760 33820 674830 599210 693390 463290 343510 385410 312140 480830 3 3 0 3 3 3 3 3 3 3 3 285330 502010 5898.4 453300 300720 240390 333670 180540 202500 193750 325180 265720 468250 29369 462690 289530 256680 332670 186980 216110 188680 309890 2 2 2 2 2 2 2 2 2 2 2 16136000 10952000 5183800 20488 731 18832 106299;106300;106301;106302 128913;128914;128915;128916;128917 128914 5 VIQAQTAFSANPANPAILSEASAPIPHDGNLYPR Unmodified 3529.7954 0.79538054 101 O00560;O00560-2 SDCBP Syntenin-1 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 73.783 73.72 4 1.6985E-17 23302 20211116_3447_TMUAki_TMT10x_S_F8 120.33 113.45 1726100 2918500 0 2646500 1933500 2464300 2137600 1630800 1471800 1742500 2352900 1606900 2722200 112010 2716300 1856800 2503000 2137000 1703500 1557700 1697200 2242500 2 2 0 2 2 2 2 2 2 2 2 937290 1658200 0 1557800 980470 1667700 1052200 911100 832240 1004700 1472900 872450 1546900 45566 1598000 939800 1675100 1056700 967330 879020 977370 1401000 1 1 0 1 1 1 1 1 1 1 1 788780 1260300 0 1088700 953020 796670 1085400 719720 639550 737840 879970 734420 1175400 66448 1118400 917050 827870 1080300 736190 678680 719870 841440 1 1 0 1 1 1 1 1 1 1 1 1803500000 1143500000 660000000 20489 101 18833 106303;106304 128918;128919 128919 2 VIQCFAETGQVQK Unmodified 1506.7501 0.75006325 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS By MS/MS 6.75 0.433 1 3 2 2 54.551 55.204 2;3 2.6586E-22 17994 20211116_3446_TMUAki_TMT10x_S_F7 199.8 169.24 16833000 23371000 0 25776000 39143000 38188000 18067000 22622000 21900000 18317000 24597000 15673000 21816000 1625300 26311000 36996000 37788000 19546000 23657000 22208000 18067000 23644000 2 2 0 2 2 2 2 2 2 2 2 15359000 20917000 0 22798000 38051000 37129000 17026000 20584000 19734000 16536000 22240000 14301000 19525000 1532000 23340000 35952000 36568000 18453000 21642000 20046000 16317000 21376000 1 1 0 1 1 1 1 1 1 1 1 1473600 2453900 0 2977400 1091700 1059600 1040500 2038100 2166400 1780600 2357300 1371900 2291700 93281 2971800 1044000 1219700 1093000 2015100 2161500 1749600 2268100 1 1 0 1 1 1 1 1 1 1 1 1899600000 1543900000 355700000 20490 1471 18834 106305;106306;106307;106308 128920;128921;128922 128922 3 VIQEGLEGLVLK Unmodified 1296.7653 0.76530261 1129 P49916;P49916-3;P49916-4;P49916-2 LIG3 DNA ligase 3 yes no 0 0 0 0 By MS/MS 5 0 1 1 77.448 77.468 2 1.4465E-11 25903 20211116_3433_TMUAki_TMT10x_P_F5 128.85 89.825 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20491 1129 18835 106309 128923 128923 1 VIQEIVDK Unmodified 942.5386 0.53859714 1148;1149 P51114;P51114-2;P51114-3;P51116 FXR1;FXR2 Fragile X mental retardation syndrome-related protein 1;Fragile X mental retardation syndrome-related protein 2 no no 0 0 0 0 By MS/MS 4 0 1 1 58.072 58 2 0.020935 18155 20211116_3442_TMUAki_TMT10x_S_F4 71.349 38.229 6064400 10184000 35786 10884000 6750700 6000200 6605800 6188200 6547900 6680400 8157200 5646800 9505700 545750 10981000 6471400 6418100 6706300 6297000 6721000 6504100 7819100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6064400 10184000 35786 10884000 6750700 6000200 6605800 6188200 6547900 6680400 8157200 5646800 9505700 545750 10981000 6471400 6418100 6706300 6297000 6721000 6504100 7819100 1 1 1 1 1 1 1 1 1 1 1 157520000 0 157520000 20492 1148;1149 18836 106310 128924 128924 1 VIQGDGVDINTLQEIVEGMK Unmodified 2157.0987 0.098734352 1031 P43490 NAMPT Nicotinamide phosphoribosyltransferase yes yes 0 0 0 0 By MS/MS By MS/MS 6.67 1.25 1 1 1 2 1 81.498 81.51 3 2.3071E-07 26349 20211116_3444_TMUAki_TMT10x_S_F5 99.059 88.272 4054300 7041000 40129 7234700 5111900 5002700 5136600 3410000 3065700 3805400 5159200 3774900 6570700 351160 7333500 4902200 5198300 5144900 3559200 3283700 3700300 4912000 3 3 2 3 3 3 3 3 3 3 3 1052600 2012000 12393 1988700 1155600 2045600 1392500 1047300 1034100 1259800 1466200 980160 1877300 100260 2031300 1114800 2057900 1389000 1121500 1083000 1221700 1401000 1 1 1 1 1 1 1 1 1 1 1 3001700 5029000 27735 5246100 3956300 2957100 3744100 2362700 2031600 2545600 3693000 2794800 4693400 250900 5302300 3787400 3140400 3755800 2437700 2200700 2478600 3511000 2 2 1 2 2 2 2 2 2 2 2 18046000000 463340000 17582000000 20493 1031 18837 106311;106312;106313 128925;128926;128927 128926 3 VIQVAAGSSNLKR Unmodified 1341.7728 0.7728476 500 P05091;P05091-2 ALDH2 Aldehyde dehydrogenase, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 2.67 1.11 1 2 1 2 2 4 39.785 39.675 3 1.5614E-11 12918 20211116_3441_TMUAki_TMT10x_S_F3 145.1 97.901 4231700 7066700 106780 6884300 6984400 7586300 5117400 4943200 5269000 4653000 5562200 3940700 6593300 464310 7046500 6654900 7625700 5293100 5150600 5364100 4556300 5356600 4 4 3 4 4 4 4 4 4 4 4 2476200 4162100 68663 4071700 5107200 5800000 3189700 2929700 3268700 2788300 3281300 2305900 3883400 281540 4186000 4851300 5737600 3338200 3119300 3322300 2729000 3164900 2 2 1 2 2 2 2 2 2 2 2 1755500 2904600 38116 2812600 1877300 1786200 1927600 2013600 2000300 1864700 2280900 1634800 2710000 182770 2860500 1803600 1888100 1954900 2031300 2041800 1827300 2191600 2 2 2 2 2 2 2 2 2 2 2 367240000 170690000 196550000 20494 500 18838 106314;106315;106316;106317;106318;106319 128928;128929;128930;128931;128932 128931 5 VIRDFNTNK Unmodified 1105.588 0.58800695 815;1825 Q15717;Q15717-2;P26378;P26378-4;P26378-2;P26378-5;P26378-1;P26378-3;Q12926;Q12926-2 ELAVL1;ELAVL4;ELAVL2 ELAV-like protein 1;ELAV-like protein 4;ELAV-like protein 2 no no 0 0 0 1 By MS/MS 8 0 1 1 35.01 35.305 3 0.038701 8081 20211116_3436_TMUAki_TMT10x_P_F8 50.978 32.81 499530 850410 18049 746010 626440 766790 561460 326240 376000 355390 548900 465240 793140 60012 768740 600120 769970 567170 354810 396770 345890 524150 1 1 1 1 1 1 1 1 1 1 1 499530 850410 18049 746010 626440 766790 561460 326240 376000 355390 548900 465240 793140 60012 768740 600120 769970 567170 354810 396770 345890 524150 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7934700 7934700 0 20495 1825;815 18839 106320 128933 128933 1 VIREPKPR Unmodified 993.60835 0.60834846 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 2 By MS/MS By MS/MS 1.4 0.49 3 2 3 2 26.603 26.55 3;4 0.007863 6100 20211116_3439_TMUAki_TMT10x_S_F1 82.75 64.488 1533200 2520800 51683 2175000 1528500 1950000 2163800 1296700 1392900 1399500 1728400 1427900 2350900 175210 2239900 1484700 1985700 2137700 1354400 1462700 1362600 1656900 5 5 5 5 5 5 5 5 5 5 5 790920 1238500 25836 1072600 855190 1244400 1353700 765690 726480 762850 873410 736620 1155100 90551 1108500 834100 1246400 1327700 802580 771740 745150 838000 3 3 3 3 3 3 3 3 3 3 3 742280 1282300 25848 1102400 673310 705530 810020 530990 666450 636700 854980 691330 1195900 84664 1131400 650600 739300 810040 551840 690970 617480 818930 2 2 2 2 2 2 2 2 2 2 2 71489000 23912000 47577000 20496 1092 18840 106321;106322;106323;106324;106325 128934;128935;128936;128937;128938 128938 5 VIRPLDQPSSFDATPYIK Unmodified 2046.0786 0.078591257 2116 Q86VP6 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 6.5 2.5 1 2 3 3 3 62.837 63.048 3;4 6.2688E-18 21379 20211116_3439_TMUAki_TMT10x_S_F1 157.47 145.55 70960000 123130000 881630 130050000 82423000 102770000 78520000 81306000 71006000 82492000 90376000 66074000 114920000 6431500 131780000 78958000 105900000 79618000 83785000 73253000 80517000 86583000 11 11 8 11 11 11 11 11 11 11 11 29886000 48589000 310650 51133000 38564000 62460000 38242000 34163000 29534000 33915000 37081000 27829000 45348000 2824900 52154000 36984000 62295000 38538000 36155000 30695000 33133000 35537000 6 6 5 6 6 6 6 6 6 6 6 41075000 74540000 570980 78916000 43858000 40312000 40278000 47143000 41472000 48577000 53295000 38246000 69570000 3606500 79621000 41974000 43602000 41080000 47630000 42558000 47384000 51045000 5 5 3 5 5 5 5 5 5 5 5 18277000000 9642600000 8634500000 20497 2116 18841 106326;106327;106328;106329;106330;106331 128939;128940;128941;128942;128943;128944;128945;128946;128947;128948;128949 128945 11 VIRQPVGR Unmodified 923.56648 0.56648364 757 P21397;P21397-2 MAOA Amine oxidase [flavin-containing] A yes no 0 0 0 1 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 27.992 27.818 3 0.0022919 8310 20211116_3441_TMUAki_TMT10x_S_F3 98.457 53.496 595980 790250 0 683500 546780 657040 496920 384280 390690 423710 631290 554900 736990 46663 704420 522890 664850 503370 405650 410650 412190 601530 3 3 0 3 3 3 3 3 3 3 3 487170 646160 0 557240 410340 562930 391240 306670 300400 336710 514440 453590 602600 38507 574840 392920 567370 395040 325640 317180 327610 489630 2 2 0 2 2 2 2 2 2 2 2 108810 144090 0 126260 136440 94107 105690 77605 90286 86998 116850 101310 134390 8156 129590 129970 97482 108330 80017 93468 84579 111900 1 1 0 1 1 1 1 1 1 1 1 20756000 11266000 9489400 20498 757 18842 106332;106333;106334 128950;128951 128951 2 VISELNGKNIEDVIAQGIGK Unmodified 2096.1477 0.14773345 507 P05387 RPLP2 60S acidic ribosomal protein P2 yes yes 0 0 0 1 By MS/MS 7 0 1 1 77.969 78.043 3 4.8685E-18 27011 20211116_3435_TMUAki_TMT10x_P_F7 145.05 125.49 3491000 5826800 0 4118900 3225900 7390500 4320700 4474100 4151800 4539000 4320600 3250400 5430700 277070 4371500 3120100 7261600 4320200 4698100 4237100 4430400 4162700 1 1 0 1 1 1 1 1 1 1 1 3491000 5826800 0 4118900 3225900 7390500 4320700 4474100 4151800 4539000 4320600 3250400 5430700 277070 4371500 3120100 7261600 4320200 4698100 4237100 4430400 4162700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 631150000 631150000 0 20499 507 18843 106335 128952 128952 1 VISFEEQVASIR Unmodified 1376.73 0.72997974 2659 Q9BT78;Q9BT78-2 COPS4 COP9 signalosome complex subunit 4 yes no 0 0 0 0 By MS/MS By MS/MS 3.83 1.07 1 1 2 2 4 2 66.374 66.287 2 2.464E-16 20156 20211116_3444_TMUAki_TMT10x_S_F5 202.31 154.44 25295000 44535000 472150 43090000 29709000 37412000 30523000 24744000 23750000 25751000 31937000 23556000 41550000 2599000 43976000 28535000 38178000 30708000 25827000 24748000 25108000 30555000 5 5 5 5 5 5 5 5 5 5 5 13674000 23996000 373690 23501000 17506000 26280000 18207000 12850000 12638000 13999000 17393000 12735000 22389000 1535600 24052000 16826000 26299000 18259000 13777000 13269000 13625000 16631000 3 3 3 3 3 3 3 3 3 3 3 11621000 20539000 98460 19589000 12203000 11132000 12316000 11893000 11112000 11752000 14544000 10821000 19162000 1063400 19924000 11710000 11879000 12449000 12050000 11479000 11483000 13924000 2 2 2 2 2 2 2 2 2 2 2 2862000000 1665200000 1196800000 20500 2659 18844 106336;106337;106338;106339;106340;106341 128953;128954;128955;128956;128957 128957 5 VISGVLQLGNIVFKK Unmodified 1613.9869 0.98686312 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 78.92 78.929 3 1.9321E-19 25970 20211116_3436_TMUAki_TMT10x_P_F8 170.56 145.12 25496000 38510000 41692 33680000 22585000 37635000 27004000 21418000 22342000 23604000 21289000 23739000 35916000 1985100 34760000 21761000 37732000 27016000 22660000 22896000 22963000 20569000 3 3 1 3 3 3 3 3 3 3 3 16987000 24451000 0 21353000 13467000 28465000 16493000 14424000 15688000 15806000 12608000 15816000 22804000 1255300 22109000 12982000 28244000 16547000 15415000 15885000 15380000 12258000 1 1 0 1 1 1 1 1 1 1 1 8509700 14059000 41692 12327000 9117700 9170700 10511000 6994300 6654900 7798100 8680300 7923500 13112000 729810 12651000 8778500 9488400 10469000 7245200 7010800 7583000 8310900 2 2 1 2 2 2 2 2 2 2 2 5939300000 3460900000 2478400000 20501 934 18845 106342;106343;106344 128958;128959;128960 128958 3 VISHYAGQDATDPFVAFHINK Unmodified 2329.1491 0.14913044 267 O60427 FADS1 Fatty acid desaturase 1 yes yes 0 0 0 0 By matching By MS/MS 8 0 2 1 1 63.281 63.369 4 2.5408E-19 18996 20211116_3447_TMUAki_TMT10x_S_F8 149.47 135.46 3391100 6090100 113730 5770300 4548800 4346700 4284000 4070500 3746100 4077400 4482400 3158300 5681600 403350 5887900 4361800 4509700 4342700 4152700 3860700 3981900 4301200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3391100 6090100 113730 5770300 4548800 4346700 4284000 4070500 3746100 4077400 4482400 3158300 5681600 403350 5887900 4361800 4509700 4342700 4152700 3860700 3981900 4301200 1 1 1 1 1 1 1 1 1 1 1 2077600000 1097900000 979680000 20502 267 18846 106345;106346 128961 128961 1 VITALVER Unmodified 899.54402 0.54401687 1184 P52732 KIF11 Kinesin-like protein KIF11 yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 51.905 52.037 2 0.013061 14235 20211116_3434_TMUAki_TMT10x_P_F6 76.825 40.43 2478300 4011400 0 4225600 2411100 2109900 2119200 3153000 3221800 3104100 3540800 2307500 3743900 200680 4264000 2304200 2303300 2199000 3151700 3240700 3033600 3405800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2478300 4011400 0 4225600 2411100 2109900 2119200 3153000 3221800 3104100 3540800 2307500 3743900 200680 4264000 2304200 2303300 2199000 3151700 3240700 3033600 3405800 1 1 0 1 1 1 1 1 1 1 1 128220000 0 128220000 20503 1184 18847 106347;106348 128962;128963 128962 2 VITEEEK Unmodified 846.43346 0.43346336 813 P26373;P26373-2 RPL13 60S ribosomal protein L13 yes no 0 0 0 0 By MS/MS 2 0 1 1 34.134 34.215 2 0.0073925 7877 20211116_3440_TMUAki_TMT10x_S_F2 133.81 39.551 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20504 813 18848 106349 128964 128964 1 VITEYLNAQESAK Unmodified 1464.746 0.74602373 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 60.733 60.779 3 0.00029459 19013 20211116_3433_TMUAki_TMT10x_P_F5 84.734 63.781 18317000 30164000 0 29961000 24864000 34039000 21215000 42444000 36883000 32203000 29618000 17053000 28145000 1296800 30641000 23728000 34614000 22195000 42424000 36579000 31873000 28797000 4 4 0 4 4 4 4 4 4 4 4 9354600 14328000 0 14461000 14518000 24035000 13073000 18852000 16725000 15039000 14449000 8708500 13370000 653960 14886000 13872000 23778000 13449000 19314000 16774000 14845000 14009000 2 2 0 2 2 2 2 2 2 2 2 8962600 15836000 0 15501000 10345000 10004000 8142600 23593000 20158000 17165000 15170000 8344100 14776000 642870 15755000 9856500 10836000 8746500 23109000 19804000 17029000 14788000 2 2 0 2 2 2 2 2 2 2 2 1240000000 436940000 803060000 20505 2048 18849 106350;106351;106352;106353 128965;128966;128967;128968;128969 128965 5 VITFANQDDYISFR Unmodified 1687.8206 0.82058566 2467 Q96G21 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes yes 0 0 0 0 By MS/MS 6 0 1 1 73.424 73.368 2 3.9364E-10 23041 20211116_3434_TMUAki_TMT10x_P_F6 124.04 105.77 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20506 2467 18850 106354 128970 128970 1 VITFIDLAGHEK Unmodified 1341.7293 0.72925145 67 O00178 GTPBP1 GTP-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 65.353 65.686 3 2.5524E-09 21684 20211116_3435_TMUAki_TMT10x_P_F7 151.7 119.69 14580000 24487000 216340 25371000 19291000 26592000 17797000 18426000 17033000 17876000 19225000 13577000 22852000 1450900 25839000 18471000 26832000 18107000 19130000 17439000 17482000 18478000 6 6 4 6 6 6 6 6 6 6 6 9526300 15651000 122970 16021000 13227000 21439000 12646000 12173000 11137000 11634000 12188000 8870600 14605000 930740 16399000 12674000 21298000 12811000 12829000 11433000 11385000 11725000 4 4 2 4 4 4 4 4 4 4 4 5053900 8836300 93370 9350700 6064300 5153300 5151100 6252200 5895800 6241900 7036700 4706400 8247100 520180 9440200 5797400 5533500 5295800 6301000 6005900 6096600 6752700 2 2 2 2 2 2 2 2 2 2 2 1324800000 747110000 577690000 20507 67 18851 106355;106356;106357 128971;128972;128973;128974;128975;128976 128974 6 VITIANR Unmodified 785.47594 0.4759373 2617 Q9BPU6 DPYSL5 Dihydropyrimidinase-related protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.894 2 1 2 3 2 36.691 36.969 2 0.0018681 8157 20211116_3447_TMUAki_TMT10x_S_F8 132.53 29.726 2462600 3833400 774.93 3552900 3266200 3368900 2600500 2067400 2221600 2074800 2830800 2292700 3575900 191860 3641600 3113500 3414200 2660900 2167900 2298300 2026000 2711900 5 5 1 5 5 5 5 5 5 5 5 1578000 2463200 774.93 2286100 2318300 2705900 1697500 1369000 1507600 1375800 1820800 1469100 2297800 125920 2351000 2206300 2700600 1748400 1459600 1553100 1343400 1746700 3 3 1 3 3 3 3 3 3 3 3 884600 1370200 0 1266800 947860 663080 903010 698380 714020 699000 1010000 823590 1278100 65948 1290600 907190 713530 912460 708300 745170 682650 965160 2 2 0 2 2 2 2 2 2 2 2 558640000 341760000 216880000 20508 2617 18852 106358;106359;106360;106361;106362 128977;128978;128979;128980;128981 128981 5 VITIMQNPR Oxidation (M) 1086.5856 0.5855641 1345 P62269 RPS18 40S ribosomal protein S18 yes yes 0 0 1 0 By MS/MS By MS/MS 5.4 2.76 2 1 2 2 3 6 4 36.953 37.128 2;3 9.1452E-05 10095 20211116_3435_TMUAki_TMT10x_P_F7 95.815 74.945 2914500 4826700 32029 5272400 5724800 5175700 3576500 3982700 3903900 3333900 4368400 2713900 4505500 305780 5345800 5436800 5251800 3750200 4090100 3973700 3282800 4199600 10 10 7 10 10 10 10 10 10 10 10 1565600 2539600 10417 2913100 4373900 4020900 2284700 2125100 2158500 1753700 2390300 1457800 2371100 174940 2962100 4141800 3985300 2422800 2245200 2209600 1728000 2298700 5 5 4 5 5 5 5 5 5 5 5 1348900 2287100 21612 2359300 1350900 1154700 1291800 1857500 1745400 1580300 1978100 1256100 2134400 130850 2383800 1295100 1266500 1327400 1844900 1764100 1554800 1901000 5 5 3 5 5 5 5 5 5 5 5 745910000 524090000 221820000 20509 1345 18853 106363;106364;106365;106366;106367;106368;106369;106370;106371;106372 128982;128983;128984;128985;128986;128987;128988;128989;128990;128991;128992 128986 1805 11 VITIMQNPR Unmodified 1070.5906 0.59064948 1345 P62269 RPS18 40S ribosomal protein S18 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 2.5 3 2 1 4 2 47.726 47.526 2 5.7813E-06 13245 20211116_3440_TMUAki_TMT10x_S_F2 182.09 139.06 8762200 14772000 179290 17284000 16378000 11972000 9409200 8411700 7247300 7514200 11845000 8159800 13793000 1000200 17376000 15540000 12444000 9841600 8705200 7630600 7375700 11284000 3 3 3 3 3 3 3 3 3 3 3 4217700 6689700 123090 8243100 11992000 9089200 6251700 3820500 3261500 3441800 5648800 3928100 6248000 573280 8312300 11361000 9088800 6548900 4138900 3533600 3377000 5375200 1 1 1 1 1 1 1 1 1 1 1 4544400 8082200 56197 9041100 4386400 2883100 3157500 4591200 3985700 4072400 6196500 4231700 7545200 426930 9063600 4178400 3355300 3292600 4566300 4097000 3998700 5909100 2 2 2 2 2 2 2 2 2 2 2 385540000 186510000 199030000 20510 1345 18853 106373;106374;106375;106376;106377;106378 128993;128994;128995;128996;128997;128998 128998 6 VIVDFSSPNIAK Unmodified 1288.7027 0.70270235 1218 P54136;P54136-2 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 7.43 0.495 4 3 3 4 65.18 65.429 2;3 1.4402E-22 19852 20211116_3447_TMUAki_TMT10x_S_F8 218.49 162.93 4925000 7888900 0 7931900 6992200 9289400 5925600 7395300 7232600 6717900 7311000 4585400 7361300 396500 8109100 6674900 9337200 6106800 7594400 7303500 6588900 7050200 2 2 0 2 2 2 2 2 2 2 2 2730800 4258700 0 4322100 4476300 6861200 3688900 4398000 4306100 3951900 4386100 2542400 3974000 211330 4442800 4269700 6777800 3802100 4582600 4356600 3878000 4228600 1 1 0 1 1 1 1 1 1 1 1 2194200 3630200 0 3609700 2515900 2428200 2236700 2997300 2926500 2766000 2924900 2043000 3387300 185170 3666300 2405300 2559400 2304700 3011800 2946900 2710900 2821600 1 1 0 1 1 1 1 1 1 1 1 1466300000 1149000000 317340000 20511 1218 18854 106379;106380;106381;106382;106383;106384;106385 128999;129000;129001;129002;129003;129004 129004 6 VIVEHAR Unmodified 822.47119 0.47118627 1613 Q13247;Q13247-3;Q13247-2;Q08170 SRSF6;SRSF4 Serine/arginine-rich splicing factor 6;Serine/arginine-rich splicing factor 4 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 1.12 1 1 1 1 3 1 26.418 26.283 2 0.001265 7926 20211116_3441_TMUAki_TMT10x_S_F3 143.02 89.309 983640 1556600 1722.8 1312000 1191500 1563700 1025500 823750 892010 844160 1132500 915810 1451500 74385 1359500 1137800 1560900 1044800 875480 921840 823610 1085000 5 5 1 5 5 5 5 5 5 5 5 793500 1227100 1722.8 1042700 957060 1376800 814460 679160 723030 680660 918850 738770 1144300 58723 1081800 913670 1366300 830770 725780 746510 664700 880320 4 4 1 4 4 4 4 4 4 4 4 190140 329510 0 269270 234460 186940 211060 144580 168980 163500 213600 177040 307240 15662 277720 224180 194570 214010 149710 175330 158900 204670 1 1 0 1 1 1 1 1 1 1 1 48875000 37884000 10991000 20512 1613 18855 106386;106387;106388;106389 129005;129006;129007;129008;129009 129009 5 VIVPNMEFR Oxidation (M) 1119.5747 0.57466507 1234 P55060;P55060-3;P55060-4 CSE1L Exportin-2 yes no 0 0 1 0 By MS/MS By MS/MS 5.29 1.03 2 2 2 1 3 4 47.281 47.482 2 0.015336 12388 20211116_3434_TMUAki_TMT10x_P_F6 68.95 48.668 25164000 42233000 260330 44966000 34588000 38584000 26927000 39216000 40654000 34268000 37351000 23432000 39418000 2395700 45584000 32983000 39715000 28139000 39692000 40641000 33672000 36134000 8 8 5 8 8 8 8 8 8 8 8 9606400 15987000 143530 16794000 19366000 24429000 13262000 14890000 15693000 13693000 14632000 8945600 14920000 1066900 17190000 18425000 24202000 13847000 15585000 15821000 13422000 14148000 3 3 3 3 3 3 3 3 3 3 3 15558000 26247000 116800 28172000 15221000 14155000 13665000 24326000 24961000 20575000 22719000 14486000 24498000 1328800 28394000 14559000 15514000 14292000 24107000 24820000 20249000 21986000 5 5 2 5 5 5 5 5 5 5 5 3376200000 2263400000 1112800000 20513 1234 18856 106390;106391;106392;106393;106394;106395;106396 129010;129011;129012;129013;129014;129015;129016 129012 1665 7 VIVPNMEFR Unmodified 1103.5798 0.57975044 1234 P55060;P55060-3;P55060-4 CSE1L Exportin-2 yes no 0 0 0 0 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 59.609 59.905 2 6.9901E-05 19293 20211116_3435_TMUAki_TMT10x_P_F7 144.12 110.12 35192000 57658000 304830 64409000 44876000 47337000 41813000 30256000 25961000 29654000 42380000 32769000 53826000 3322300 64975000 42970000 48893000 42082000 31606000 27687000 28987000 40375000 5 5 4 5 5 5 5 5 5 5 5 20128000 33044000 194250 36261000 29184000 36232000 28308000 17889000 15610000 17245000 24563000 18743000 30846000 1961600 36765000 27971000 36500000 28367000 19095000 16754000 16869000 23418000 3 3 2 3 3 3 3 3 3 3 3 15063000 24614000 110580 28147000 15693000 11105000 13505000 12367000 10351000 12409000 17817000 14026000 22980000 1360700 28211000 14999000 12392000 13715000 12512000 10933000 12118000 16957000 2 2 2 2 2 2 2 2 2 2 2 3611900000 1833900000 1778000000 20514 1234 18856 106397;106398;106399;106400;106401;106402 129017;129018;129019;129020;129021;129022 129018 6 VIVVGNPANTNCLTASK Unmodified 1756.9142 0.91416847 988 P40925;P40925-3;P40925-2 MDH1 Malate dehydrogenase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 3.5 2.97 3 4 3 6 4 56.872 56.792 2;3 1.825E-61 16851 20211116_3428_TMUAki_TMT10x_P_F1 295.86 269.19 47513000 80171000 423680 86732000 66269000 76735000 52229000 70732000 69610000 65288000 69966000 44241000 74832000 4360600 87868000 63204000 78654000 54251000 72055000 70068000 63988000 67483000 16 16 9 16 16 16 16 16 16 16 16 21546000 34834000 259970 38177000 42446000 53797000 31176000 31183000 32030000 28649000 31338000 20063000 32516000 2239500 38945000 40426000 53333000 32238000 32770000 32523000 28084000 30252000 8 8 4 8 8 8 8 8 8 8 8 25967000 45337000 163710 48555000 23823000 22938000 21054000 39549000 37579000 36639000 38628000 24178000 42316000 2121100 48923000 22778000 25321000 22012000 39285000 37545000 35903000 37230000 8 8 5 8 8 8 8 8 8 8 8 11127000000 7145700000 3981400000 20515 988 18857 106403;106404;106405;106406;106407;106408;106409;106410;106411;106412 129023;129024;129025;129026;129027;129028;129029;129030;129031;129032;129033;129034;129035;129036;129037;129038;129039 129025 17 VIVVGSR Unmodified 728.45447 0.45447358 1547 Q08257;Q08257-2 CRYZ Quinone oxidoreductase yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 36.099 36.082 2 0.046687 10360 20211116_3439_TMUAki_TMT10x_S_F1 70.912 25.195 1492400 2288900 20658 2433700 2020700 2117100 1747400 1584800 1651400 1597300 1926500 1389700 2136300 150380 2467800 1931900 2164300 1783800 1638500 1693900 1559500 1849900 2 2 2 2 2 2 2 2 2 2 2 743450 1084400 15690 1161100 1141800 1437200 902460 815340 799820 771490 926950 692340 1012200 81839 1183300 1089800 1433200 924750 859060 822680 755280 890260 1 1 1 1 1 1 1 1 1 1 1 748930 1204500 4968.3 1272500 878870 679830 844980 769420 851550 825850 999530 697370 1124100 68542 1284500 842150 731130 859070 779460 871270 804240 959630 1 1 1 1 1 1 1 1 1 1 1 75426000 33692000 41735000 20516 1547 18858 106413;106414 129040;129041 129041 2 VIYVLPMLTIKEDK Oxidation (M) 1676.9423 0.9422807 3064 Q9P2J5;Q9P2J5-2 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 1 1 By MS/MS By MS/MS 2 0 2 1 1 73.567 73.383 3 0.00077935 25078 20211116_3429_TMUAki_TMT10x_P_F2 77.912 61.605 11027000 17409000 232860 16163000 11721000 23664000 13044000 14354000 14289000 14614000 13976000 10269000 16239000 1140900 16689000 11286000 23436000 13201000 15072000 14471000 14262000 13492000 3 3 3 3 3 3 3 3 3 3 3 11027000 17409000 232860 16163000 11721000 23664000 13044000 14354000 14289000 14614000 13976000 10269000 16239000 1140900 16689000 11286000 23436000 13201000 15072000 14471000 14262000 13492000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 777760000 777760000 0 20517 3064 18859 106415;106416 129042;129043;129044;129045 129044 3111 4 VIYVLPMLTIKEDK Unmodified 1660.9474 0.94736607 3064 Q9P2J5;Q9P2J5-2 LARS Leucine--tRNA ligase, cytoplasmic yes no 0 0 0 1 By MS/MS 3 0 1 1 78.303 78.218 3 0.00092298 27534 20211116_3430_TMUAki_TMT10x_P_F3 75.764 48.115 4591900 6896300 24042 6992200 5097200 6976300 5464300 3147300 2794300 3800300 5179800 4275700 6435300 410180 7126200 4898100 7021900 5440800 3412700 3044200 3684700 4922900 1 1 1 1 1 1 1 1 1 1 1 4591900 6896300 24042 6992200 5097200 6976300 5464300 3147300 2794300 3800300 5179800 4275700 6435300 410180 7126200 4898100 7021900 5440800 3412700 3044200 3684700 4922900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 663830000 663830000 0 20518 3064 18859 106417 129046 129046 1 VKADRDESSPYAAMLAAQDVAQR Oxidation (M) 2507.2074 0.20744995 1343 P62263 RPS14 40S ribosomal protein S14 yes yes 0 0 1 2 By MS/MS By MS/MS 4.94 1.09 1 6 3 5 1 8 8 40.386 40.505 3;4 9.2543E-46 9541 20211116_3445_TMUAki_TMT10x_S_F6 203.06 187.8 17446000 31362000 150310 34360000 24571000 28600000 17029000 31028000 31368000 26132000 27235000 16244000 29275000 1333700 34755000 23374000 29546000 18111000 31278000 31138000 25724000 26401000 26 26 13 26 26 26 26 26 26 26 26 6488800 11629000 55062 12760000 14582000 19813000 9626500 11319000 11367000 9886300 9319000 6041800 10855000 602780 13043000 13858000 19559000 10078000 11895000 11415000 9714500 9053100 9 9 4 9 9 9 9 9 9 9 9 10957000 19733000 95245 21600000 9989100 8786600 7402300 19708000 20001000 16246000 17916000 10202000 18420000 730910 21712000 9516200 9986900 8033800 19383000 19722000 16009000 17348000 17 17 9 17 17 17 17 17 17 17 17 21480000000 14805000000 6674100000 20519 1343 18860 106418;106419;106420;106421;106422;106423;106424;106425;106426;106427;106428;106429;106430;106431;106432;106433 129047;129048;129049;129050;129051;129052;129053;129054;129055;129056;129057;129058;129059;129060;129061;129062;129063;129064;129065;129066;129067;129068;129069;129070;129071;129072;129073 129069 1804 27 VKADRDESSPYAAMLAAQDVAQR Unmodified 2491.2125 0.21253533 1343 P62263 RPS14 40S ribosomal protein S14 yes yes 0 0 0 2 By MS/MS By MS/MS 6.45 0.988 2 4 3 2 4 7 51.636 51.876 3;4 9.3844E-93 16625 20211116_3446_TMUAki_TMT10x_S_F7 303.76 282.82 58795000 95871000 295640 112160000 83484000 75086000 62712000 50413000 47271000 47064000 72235000 54745000 89519000 3403300 112720000 79536000 78225000 64220000 52402000 49652000 46103000 68910000 16 16 7 16 16 16 16 16 16 16 16 33190000 52740000 175580 63234000 58052000 59622000 44944000 30132000 27132000 26564000 40320000 30904000 49251000 1998900 63714000 55341000 60299000 45722000 32018000 28849000 26091000 38487000 8 8 3 8 8 8 8 8 8 8 8 25604000 43131000 120060 48928000 25431000 15464000 17769000 20281000 20139000 20500000 31915000 23840000 40268000 1404400 49005000 24195000 17926000 18498000 20384000 20802000 20012000 30422000 8 8 4 8 8 8 8 8 8 8 8 19792000000 9734800000 10058000000 20520 1343 18860 106434;106435;106436;106437;106438;106439;106440;106441;106442;106443;106444 129074;129075;129076;129077;129078;129079;129080;129081;129082;129083;129084;129085;129086;129087;129088;129089;129090 129089 17 VKAEMETLVR Oxidation (M) 1190.6329 0.63290823 2617 Q9BPU6 DPYSL5 Dihydropyrimidinase-related protein 5 yes yes 0 0 1 1 By MS/MS 4.5 0.5 1 1 2 33.958 33.943 3 0.065872 7949 20211116_3431_TMUAki_TMT10x_P_F4 43.502 24.405 2253400 3732600 35124 4040400 5162500 4786700 3020700 2595600 2600400 2605100 3361700 2098400 3484000 260300 4111300 4898300 4781100 3163000 2749900 2690900 2543900 3219400 2 2 2 2 2 2 2 2 2 2 2 2253400 3732600 35124 4040400 5162500 4786700 3020700 2595600 2600400 2605100 3361700 2098400 3484000 260300 4111300 4898300 4781100 3163000 2749900 2690900 2543900 3219400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 184860000 184860000 0 20521 2617 18861 106445;106446 129091 129091 2867 1 VKAEPAKIEAFR Unmodified 1357.7718 0.77178497 473 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 2 By MS/MS By MS/MS 5.88 2.89 2 1 1 4 5 3 39.642 39.795 3;4 1.9034E-07 9283 20211116_3447_TMUAki_TMT10x_S_F8 135.02 111.65 16080000 24506000 130610 25019000 32690000 22422000 15279000 19342000 25141000 17551000 24856000 14972000 22869000 1614800 25437000 30905000 22932000 16535000 19767000 25126000 17215000 23987000 8 8 3 7 8 8 7 8 8 8 8 5672800 8574700 26631 6990700 20099000 13967000 5221300 6251600 8148400 5855700 8036700 5281500 7995200 627420 7337200 18891000 13625000 5985800 6733800 8149200 5735300 7756200 5 5 1 4 5 5 4 5 5 5 5 10407000 15932000 103980 18028000 12590000 8454600 10057000 13090000 16992000 11696000 16820000 9690900 14874000 987370 18100000 12015000 9307600 10549000 13033000 16977000 11480000 16231000 3 3 2 3 3 3 3 3 3 3 3 2001500000 1358500000 643010000 20522 473 18862 106447;106448;106449;106450;106451;106452;106453;106454 129092;129093;129094;129095;129096;129097;129098;129099;129100 129098 9 VKAEPFIK Unmodified 930.55385 0.55385327 1231 P55010 EIF5 Eukaryotic translation initiation factor 5 yes yes 0 0 0 1 By MS/MS 8 0 1 1 43.848 43.859 3 0.010981 11110 20211116_3447_TMUAki_TMT10x_S_F8 67.113 17.745 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20523 1231 18863 106455 129101 129101 1 VKAETYHCCLEITK 2 Carbamidomethyl (C) 1864.8812 0.88115378 2117 Q86VV8;Q86VV8-4;Q86VV8-3 RTTN Rotatin yes no 0 2 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 49.768 49.515 4 0.021827 14102 20211116_3440_TMUAki_TMT10x_S_F2 57.679 25.879 11876000 18200000 20609 19953000 12715000 13949000 9945400 10012000 7901600 9840400 12979000 11058000 16990000 973780 20142000 12121000 14493000 10170000 10373000 8308100 9617700 12363000 3 3 2 3 3 3 3 3 3 3 3 5843200 8649600 15283 9703600 8338300 9982300 6014400 4839000 3611700 4674700 6372500 5440700 8074900 533630 9829000 7937600 10037000 6147800 5174600 3877400 4572300 6061800 1 1 1 1 1 1 1 1 1 1 1 6033200 9550900 5326 10249000 4376600 3967100 3931100 5173300 4289900 5165700 6606600 5617300 8914600 440150 10313000 4182900 4456000 4021900 5198800 4430700 5045400 6301400 2 2 1 2 2 2 2 2 2 2 2 2192200000 1346000000 846180000 20524 2117 18864 106456;106457;106458 129102;129103;129104 129103 17;18 3 VKDEPQRR Unmodified 1026.557 0.55704117 505;94 P05204;O00479 HMGN2;HMGN4 Non-histone chromosomal protein HMG-17;High mobility group nucleosome-binding domain-containing protein 4 no no 0 0 0 2 By MS/MS By MS/MS 4.75 0.433 1 3 3 1 23.758 23.754 3;4 0.067094 4397 20211116_3433_TMUAki_TMT10x_P_F5 56.432 36.645 1593400 2496200 31764 2085700 1675400 2718900 1730200 1527400 1541200 1463900 1846800 1483900 2327700 161930 2166300 1609700 2704000 1746300 1611200 1587000 1432300 1772100 4 4 3 4 4 4 4 4 4 4 4 1285500 2031500 15589 1626600 1369500 2371900 1389500 1203600 1255400 1155200 1477900 1197000 1894100 121350 1699200 1314500 2344100 1404200 1281200 1290900 1130200 1418800 3 3 2 3 3 3 3 3 3 3 3 307950 464640 16175 459100 305900 347010 340730 323830 285810 308650 368870 286850 433540 40577 467070 295170 359900 342100 329960 296110 302070 353270 1 1 1 1 1 1 1 1 1 1 1 85578000 68021000 17557000 20525 505;94 18865 106459;106460;106461;106462 129105;129106;129107 129106 3 VKDFATVYVEAIK Unmodified 1481.813 0.81298108 42 CON__P15497 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 3 1 69.383 69.352 3 1.5166E-06 22021 20211116_3436_TMUAki_TMT10x_P_F8 116.43 79.661 + 13070000 23421000 204970 18908000 19141000 26642000 17861000 28701000 33328000 28005000 24019000 12171000 21838000 1359700 19724000 18334000 26710000 18663000 29057000 32898000 27380000 23458000 3 3 3 3 3 3 3 3 3 3 3 4473200 7306700 80054 6391900 8407100 16605000 7330800 10712000 13621000 11275000 8232400 4165500 6814500 500560 6738200 8038900 16153000 7687000 11205000 13390000 10989000 8108300 1 1 1 1 1 1 1 1 1 1 1 8597000 16115000 124920 12516000 10734000 10037000 10530000 17989000 19708000 16730000 15786000 8005600 15023000 859110 12986000 10295000 10557000 10976000 17851000 19508000 16392000 15350000 2 2 2 2 2 2 2 2 2 2 2 1528600000 1129400000 399200000 20526 42 18866 106463;106464;106465;106466 129108;129109;129110;129111;129112 129110 5 VKDFATVYVEAIKDSGR Unmodified 1896.9945 0.99452728 42 CON__P15497 yes yes 0 0 0 2 By MS/MS By matching 2 0 2 1 1 70.143 69.92 4 2.5721E-07 23709 20211116_3429_TMUAki_TMT10x_P_F2 105.67 92.633 + 1425900 2677000 37480 2149600 2829400 8213300 3295800 7535800 8921400 6401300 3920700 1328000 2496000 172810 2320900 2727000 7977900 3492900 7662100 8652400 6298600 3936900 1 1 1 1 1 1 1 1 1 1 1 1425900 2677000 37480 2149600 2829400 8213300 3295800 7535800 8921400 6401300 3920700 1328000 2496000 172810 2320900 2727000 7977900 3492900 7662100 8652400 6298600 3936900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1180400000 565000000 615430000 20527 42 18867 106467;106468 129113 129113 1 VKDILQNVFKLEK Unmodified 1572.9239 0.92392852 1041 P46063 RECQL ATP-dependent DNA helicase Q1 yes yes 0 0 0 2 By MS/MS 4 0 1 1 74.439 74.477 4 5.805E-07 24415 20211116_3431_TMUAki_TMT10x_P_F4 120.3 106.51 6716700 10805000 83001 10144000 11392000 17584000 9875700 9588700 9621500 9610400 8569700 6254600 10080000 699700 10507000 10890000 17274000 10089000 10153000 9762100 9385100 8299500 1 1 1 1 1 1 1 1 1 1 1 6716700 10805000 83001 10144000 11392000 17584000 9875700 9588700 9621500 9610400 8569700 6254600 10080000 699700 10507000 10890000 17274000 10089000 10153000 9762100 9385100 8299500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 807200000 807200000 0 20528 1041 18868 106469 129114 129114 1 VKEDENVPFLLVGNK Unmodified 1699.9145 0.91448604 621 P11233 RALA Ras-related protein Ral-A yes yes 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 64.914 64.951 3 6.5738E-07 20002 20211116_3445_TMUAki_TMT10x_S_F6 115.82 89.692 15760000 26234000 73135 25808000 19349000 27303000 18392000 18819000 17368000 18709000 19843000 14673000 24477000 1226400 26381000 18520000 27532000 18674000 19559000 17801000 18277000 19065000 6 6 2 6 6 6 6 6 6 6 6 11038000 17598000 73135 17677000 14184000 22555000 13781000 13044000 11801000 12789000 13400000 10277000 16421000 914180 18101000 13587000 22463000 13939000 13735000 12149000 12501000 12877000 4 4 2 4 4 4 4 4 4 4 4 4721600 8636100 0 8130900 5165600 4748900 4610400 5774500 5567100 5920000 6443100 4395600 8056500 312260 8279900 4933500 5069500 4735200 5823700 5652700 5775800 6188300 2 2 0 2 2 2 2 2 2 2 2 2518200000 1046700000 1471500000 20529 621 18869 106470;106471;106472;106473 129115;129116;129117;129118;129119;129120 129120 6 VKEDPDGEHAR Unmodified 1251.5844 0.58437813 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 1 By MS/MS 3 0 2 2 26.006 25.706 3;4 4.9827E-06 7400 20211116_3441_TMUAki_TMT10x_S_F3 118.77 108.99 220120 393120 7666.8 307020 255130 264250 280360 159000 177720 175450 277890 205010 366500 25885 318660 245720 269480 279880 167460 188850 170680 264970 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 220120 393120 7666.8 307020 255130 264250 280360 159000 177720 175450 277890 205010 366500 25885 318660 245720 269480 279880 167460 188850 170680 264970 2 2 2 2 2 2 2 2 2 2 2 11510000 0 11510000 20530 1171 18870 106474;106475 129121;129122 129121 2 VKEDPDGEHARR Unmodified 1407.6855 0.68548916 1171 P52272;P52272-2 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 2 By MS/MS 3 0 2 2 24.855 24.551 3;4 0.0016485 6942 20211116_3441_TMUAki_TMT10x_S_F3 78.324 56.451 198140 380860 2335.2 287570 244770 261090 262300 219550 208110 256210 255820 184500 355040 8026.8 299560 235270 266680 263470 226420 215780 248720 245300 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 198140 380860 2335.2 287570 244770 261090 262300 219550 208110 256210 255820 184500 355040 8026.8 299560 235270 266680 263470 226420 215780 248720 245300 3 3 1 3 3 3 3 3 3 3 3 9958300 0 9958300 20531 1171 18871 106476;106477 129123;129124;129125 129124 3 VKEDRFENNELFAK Unmodified 1737.8686 0.86859848 279 O60610;O60610-2;O60610-3 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 2 By MS/MS By matching 6 0 2 1 1 46.552 46.675 4 2.0913E-06 12087 20211116_3434_TMUAki_TMT10x_P_F6 115.8 89.072 1687300 2972000 11348 4080300 5502600 5478400 3004400 3070300 2908600 2363100 2867600 1571200 2777300 203900 4105200 5214000 5440600 3175200 3222000 2961800 2337100 2767500 1 1 1 1 1 1 1 1 1 1 1 1687300 2972000 11348 4080300 5502600 5478400 3004400 3070300 2908600 2363100 2867600 1571200 2777300 203900 4105200 5214000 5440600 3175200 3222000 2961800 2337100 2767500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 337820000 180080000 157730000 20532 279 18872 106478;106479 129126 129126 1 VKEEDESANSLRPGALFFSR Unmodified 2251.1233 0.12330962 726 P18887 XRCC1 DNA repair protein XRCC1 yes yes 0 0 0 2 By MS/MS By MS/MS 6.2 0.748 1 2 2 2 3 53.961 54.279 4 7.628E-51 15573 20211116_3445_TMUAki_TMT10x_S_F6 220.74 200.08 43069000 69456000 1028400 70679000 53716000 75822000 37654000 63955000 49134000 43840000 65091000 40108000 64815000 4270300 71523000 51157000 76658000 38795000 65022000 49395000 43292000 62297000 6 6 4 5 5 6 4 6 4 5 6 18094000 28818000 203920 24295000 31524000 46380000 18698000 26671000 19816000 18019000 27197000 16848000 26874000 1765200 24863000 29909000 45443000 19077000 27853000 20088000 17955000 26007000 3 3 2 2 3 3 2 3 2 3 3 24975000 40638000 824460 46384000 22192000 29442000 18957000 37284000 29318000 25821000 37895000 23261000 37941000 2505100 46660000 21248000 31215000 19718000 37169000 29307000 25337000 36290000 3 3 2 3 2 3 2 3 2 2 3 6521300000 2877100000 3644200000 20533 726 18873 106480;106481;106482;106483;106484 129127;129128;129129;129130;129131;129132 129130 6 VKEESQLPGTGGPEDVLQPVQR Unmodified 2362.2129 0.21285291 1501 Q02952;Q02952-3;Q02952-2 AKAP12 A-kinase anchor protein 12 yes no 0 0 0 1 By MS/MS By MS/MS 4.71 1.03 2 4 4 4 7 7 52.437 52.539 3;4 3.5533E-27 14479 20211116_3434_TMUAki_TMT10x_P_F6 176.7 153.04 41919000 73771000 315020 80970000 65299000 81938000 49683000 69417000 67227000 62339000 64359000 39030000 68864000 3692600 82109000 62212000 83132000 51755000 70998000 67523000 61175000 62173000 22 22 11 22 22 22 22 22 22 22 22 23350000 38947000 73988 43588000 47644000 63641000 36057000 37529000 36487000 33805000 35334000 21739000 36359000 1982000 44439000 45373000 63009000 37193000 39363000 37060000 33169000 34121000 11 11 3 11 11 11 11 11 11 11 11 18568000 34824000 241030 37382000 17655000 18297000 13626000 31888000 30740000 28534000 29025000 17290000 32504000 1710600 37670000 16839000 20122000 14562000 31635000 30463000 28006000 28052000 11 11 8 11 11 11 11 11 11 11 11 8943300000 5015700000 3927600000 20534 1501 18874 106485;106486;106487;106488;106489;106490;106491;106492;106493;106494;106495;106496;106497;106498 129133;129134;129135;129136;129137;129138;129139;129140;129141;129142;129143;129144;129145;129146;129147;129148;129149;129150;129151;129152;129153;129154;129155 129142 23 VKEGMNIVEAMER 2 Oxidation (M) 1536.7276 0.72761325 1385 P62937;P62937-2 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 0 0 2 1 By MS/MS By MS/MS 4.38 1.32 1 1 2 2 2 4 4 34.634 34.625 3 0.0057747 6809 20211116_3444_TMUAki_TMT10x_S_F5 62.68 49.874 5715400 9976500 65940 8495900 12663000 13707000 8428400 10710000 12419000 10197000 10326000 5321900 9303600 604190 8849700 12038000 13575000 8894200 11025000 12385000 9980100 10026000 10 10 4 10 10 10 10 10 10 10 10 3155400 5257900 65143 4429000 9578400 9989200 5337600 5639200 6403600 5337500 5367600 2938500 4903100 408820 4660000 9081400 9735600 5668900 5944000 6431200 5225300 5210000 4 4 3 4 4 4 4 4 4 4 4 2559900 4718600 797.34 4066900 3084400 3718200 3090800 5070600 6015000 4859500 4958300 2383400 4400500 195370 4189700 2956500 3839700 3225300 5080900 5953800 4754700 4815800 6 6 1 6 6 6 6 6 6 6 6 3248000000 2751700000 496290000 20535 1385 18875 106499;106500;106501;106502;106503;106504;106505;106506 129156;129157;129158;129159;129160;129161;129162;129163;129164;129165 129163 1858;1859 10 VKEGMNIVEAMER Oxidation (M) 1520.7327 0.73269863 1385 P62937;P62937-2 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 0 0 1 1 By MS/MS By MS/MS 4.41 1.1 1 5 8 8 5 14 13 45.298 45.371 2;3 5.0369E-05 13606 20211116_3442_TMUAki_TMT10x_S_F4 98.943 81.827 151520000 243790000 1383300 250600000 266130000 227650000 175570000 151520000 124470000 144530000 209850000 141080000 227510000 14267000 254830000 252910000 231620000 181240000 157690000 131890000 141440000 199790000 25 25 19 25 25 25 25 25 25 25 25 70800000 108460000 352730 110760000 191080000 169260000 115060000 69484000 57757000 66836000 94050000 65917000 101210000 6965800 113710000 181270000 166580000 118910000 75602000 62553000 65384000 89603000 12 12 10 12 12 12 12 12 12 12 12 80723000 135330000 1030500 139840000 75050000 58393000 60505000 82038000 66712000 77689000 115800000 75167000 126300000 7301700 141120000 71640000 65042000 62325000 82087000 69338000 76055000 110190000 13 13 9 13 13 13 13 13 13 13 13 24913000000 16964000000 7948700000 20536 1385 18875 106507;106508;106509;106510;106511;106512;106513;106514;106515;106516;106517;106518;106519;106520;106521;106522;106523;106524;106525;106526;106527;106528;106529;106530;106531;106532;106533 129166;129167;129168;129169;129170;129171;129172;129173;129174;129175;129176;129177;129178;129179;129180;129181;129182;129183;129184;129185;129186 129179 1858;1859 21 VKEGMNIVEAMER Unmodified 1504.7378 0.737784 1385 P62937;P62937-2 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 0 0 0 1 By MS/MS By MS/MS 4.87 1.15 2 4 4 4 1 7 8 57.594 57.664 2;3 3.8714E-19 16898 20211116_3445_TMUAki_TMT10x_S_F6 185.67 152.47 177010000 292660000 1261800 297340000 247850000 159330000 206000000 69312000 51658000 79104000 192080000 164820000 273100000 16366000 300940000 236640000 168810000 206360000 75308000 64290000 76854000 180950000 20 20 10 20 20 20 20 20 20 20 20 68663000 111140000 279400 112890000 140480000 98139000 123080000 27051000 19917000 30675000 72704000 63931000 103710000 6575100 114820000 134250000 99290000 122570000 31199000 26650000 29809000 68501000 9 9 3 9 9 9 9 9 9 9 9 108350000 181530000 982380 184450000 107370000 61196000 82912000 42261000 31741000 48429000 119380000 100890000 169390000 9791000 186120000 102390000 69519000 83795000 44108000 37640000 47044000 112450000 11 11 7 11 11 11 11 11 11 11 11 26242000000 14917000000 11324000000 20537 1385 18875 106534;106535;106536;106537;106538;106539;106540;106541;106542;106543;106544;106545;106546;106547;106548 129187;129188;129189;129190;129191;129192;129193;129194;129195;129196;129197;129198;129199;129200;129201;129202;129203;129204;129205;129206;129207 129203 21 VKEPSVQEATSTSDILK Unmodified 1830.9575 0.95747307 2165 Q8IYB3;Q8IYB3-2 SRRM1 Serine/arginine repetitive matrix protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 5.25 0.829 1 1 2 3 1 50.087 50.238 3 1.023E-21 13561 20211116_3434_TMUAki_TMT10x_P_F6 171.98 144.33 8918000 14539000 70451 20603000 16894000 17620000 10399000 13156000 15059000 11877000 14053000 8303700 13590000 867680 20546000 16036000 18034000 11032000 13564000 15080000 11653000 13588000 5 5 2 5 5 5 5 5 5 5 5 5552900 9045500 70451 12512000 14973000 15613000 8658400 8292000 9365900 7283000 8643900 5170800 8453400 652170 12566000 14202000 15550000 9134700 8770100 9471600 7154600 8360800 3 3 2 3 3 3 3 3 3 3 3 3365100 5494000 0 8091000 1920900 2006800 1740500 4864400 5692700 4594300 5409400 3132900 5136200 215510 7979800 1834500 2483900 1897200 4793500 5608300 4498200 5227000 2 2 0 2 2 2 2 2 2 2 2 1606400000 1309800000 296620000 20538 2165 18876 106549;106550;106551;106552 129208;129209;129210;129211;129212 129210 5 VKFDDGAVFLAACSSGDTDEVLK Unmodified 2443.1577 0.15770579 149 O14974;O14974-4;O14974-3;O14974-2 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 0 0 0 1 By MS/MS 3.5 0.5 1 1 2 74.447 74.267 3 1.7053E-07 24777 20211116_3442_TMUAki_TMT10x_S_F4 93.093 80.897 1504300 2592100 0 2478500 1859900 1700200 1752600 1396200 1295200 1546300 1773000 1400600 2418300 127490 2524800 1780500 1773200 1769200 1439400 1354600 1504000 1695600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1504300 2592100 0 2478500 1859900 1700200 1752600 1396200 1295200 1546300 1773000 1400600 2418300 127490 2524800 1780500 1773200 1769200 1439400 1354600 1504000 1695600 1 1 0 1 1 1 1 1 1 1 1 280840000 0 280840000 20539 149 18877 106553;106554 129213 129213 1 VKFDYVPTDTTPR Unmodified 1537.7777 0.77765821 3358 Q9Y6X9;Q9Y6X9-2 MORC2 MORC family CW-type zinc finger protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 48.197 48.422 3 0.00047732 15236 20211116_3446_TMUAki_TMT10x_S_F7 77.746 59.15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20540 3358 18878 106555;106556;106557 129214;129215;129216 129216 3 VKFTLAK Unmodified 805.50617 0.5061748 1054 P46781 RPS9 40S ribosomal protein S9 yes yes 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 46.303 46.46 3 0.0052997 13365 20211116_3442_TMUAki_TMT10x_S_F4 94.302 27.62 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20541 1054 18879 106558;106559 129217;129218 129218 2 VKGDVDISLPK Unmodified 1169.6656 0.66558856 1555 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 1 By MS/MS 6 0 1 1 50.686 50.828 3 0.00069828 14144 20211116_3445_TMUAki_TMT10x_S_F6 82.202 11.639 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20542 1555 18880 106560 129219 129219 1 VKGDVDVSVPK Unmodified 1141.6343 0.63428844 1555 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 1 By MS/MS By matching 6 0 2 1 1 42.057 42.16 3 0.00068767 10363 20211116_3434_TMUAki_TMT10x_P_F6 81.494 58.664 1152100 1805500 19408 1996000 2148800 2481800 1628400 1369500 1482700 1239200 1558600 1072900 1685500 127570 2030000 2048500 2473300 1674400 1444700 1517500 1215700 1501200 1 1 1 1 1 1 1 1 1 1 1 1152100 1805500 19408 1996000 2148800 2481800 1628400 1369500 1482700 1239200 1558600 1072900 1685500 127570 2030000 2048500 2473300 1674400 1444700 1517500 1215700 1501200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 115250000 72158000 43095000 20543 1555 18881 106561;106562 129220 129220 1 VKGGGHVAQIYAIR Unmodified 1467.831 0.83103118 1340 P62249 RPS16 40S ribosomal protein S16 yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.957 1 2 2 1 4 2 35.737 35.586 3;4 0.00011519 8583 20211116_3431_TMUAki_TMT10x_P_F4 92.856 73.198 2550200 4357500 19137 4357800 5545000 5479900 3286700 3804900 3891500 3430200 4034900 2374600 4066000 269880 4462500 5261100 5475700 3470700 3941900 3937500 3365600 3887900 4 4 3 4 4 4 4 4 4 4 4 1508400 2656300 17294 2667700 4612000 4614800 2395000 2260700 2504800 2106800 2404100 1404600 2478700 184640 2749800 4367500 4528200 2548700 2412700 2539900 2064000 2322300 2 2 2 2 2 2 2 2 2 2 2 1041800 1701200 1843.8 1690100 932970 865150 891700 1544300 1386600 1323400 1630800 969980 1587300 85237 1712600 893570 947500 921970 1529200 1397700 1301600 1565700 2 2 1 2 2 2 2 2 2 2 2 433850000 339050000 94798000 20544 1340 18882 106563;106564;106565;106566;106567;106568 129221;129222;129223;129224 129222 4 VKGHFGPINSVAFHPDGK Unmodified 1905.985 0.98496564 1623 Q13347 EIF3I Eukaryotic translation initiation factor 3 subunit I yes yes 0 0 0 1 By MS/MS By matching 2 0 2 1 1 44.025 43.887 5 2.4296E-08 13085 20211116_3429_TMUAki_TMT10x_P_F2 115.34 93.142 674600 1044700 0 1149900 1894100 2513900 1342500 1726900 1698100 1251500 1333500 627970 975230 54863 1186100 1801100 2459200 1401600 1781300 1699000 1241900 1297700 1 1 0 1 1 1 1 1 1 1 1 674600 1044700 0 1149900 1894100 2513900 1342500 1726900 1698100 1251500 1333500 627970 975230 54863 1186100 1801100 2459200 1401600 1781300 1699000 1241900 1297700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 291010000 237930000 53078000 20545 1623 18883 106569;106570 129225 129225 1 VKGNVFK Unmodified 790.47012 0.47012364 1456 P84098 RPL19 60S ribosomal protein L19 yes yes 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 37.289 37.156 3 0.076495 8815 20211116_3440_TMUAki_TMT10x_S_F2 44.395 12.459 3646400 6276700 59800 5737900 4045300 4361200 4240400 4097600 4770000 3753700 5032100 3395600 5854800 363630 5871100 3887300 4521900 4307400 4169100 4838800 3680200 4846200 3 3 3 3 3 3 3 3 3 3 3 800770 1363700 22487 1281600 1743900 1791900 1173500 1090000 1171200 885940 1218300 745760 1272200 100560 1320900 1659200 1778200 1220100 1137500 1193300 873670 1173800 1 1 1 1 1 1 1 1 1 1 1 2845700 4913000 37312 4456300 2301400 2569400 3066900 3007600 3598800 2867700 3813800 2649900 4582600 263080 4550200 2228100 2743700 3087300 3031600 3645500 2806500 3672400 2 2 2 2 2 2 2 2 2 2 2 98004000 46743000 51261000 20546 1456 18884 106571;106572;106573 129226;129227 129226 2 VKILFIR Unmodified 887.59566 0.59565851 510 P05556-4;P05556-3 ITGB1 Integrin beta-1 yes no 0 0 0 1 By MS/MS 1 0 1 1 31.967 31.997 3 0.092883 8721 20211116_3439_TMUAki_TMT10x_S_F1 44.721 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20547 510 18885 106574 129228 129228 1 VKIPEGTILTMDMLTVK 2 Oxidation (M) 1920.0312 0.031172058 2921 Q9NR45 NANS Sialic acid synthase yes yes 0 0 2 1 By MS/MS 7 0 1 1 63.039 63.711 3 0.004937 20895 20211116_3435_TMUAki_TMT10x_P_F7 60.768 42.172 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20548 2921 18886 106575 129229 129229 3023;3024 1 VKKDDEEEDPLDQLISR Unmodified 2028.0011 0.0011287971 3020 Q9NYJ1;Q9NYJ1-2 COA4 Cytochrome c oxidase assembly factor 4 homolog, mitochondrial yes no 0 0 0 2 By MS/MS 4 0 1 1 56.413 56.565 4 0.026483 17014 20211116_3431_TMUAki_TMT10x_P_F4 45.916 34.645 5689200 9570500 92861 9533000 9935100 13334000 7519100 7790300 8127200 7292900 8101800 5297900 8930200 617680 9784800 9471100 13225000 7772100 8185500 8240500 7143200 7816300 1 1 1 1 1 1 1 1 1 1 1 5689200 9570500 92861 9533000 9935100 13334000 7519100 7790300 8127200 7292900 8101800 5297900 8930200 617680 9784800 9471100 13225000 7772100 8185500 8240500 7143200 7816300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 414230000 414230000 0 20549 3020 18887 106576 129230 129230 1 VKLPSGSK Unmodified 814.49125 0.49125301 1384 P62917 RPL8 60S ribosomal protein L8 yes yes 0 0 0 1 By MS/MS 2 0 1 1 34.971 34.746 3 0.073728 9403 20211116_3429_TMUAki_TMT10x_P_F2 49.35 25.32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20550 1384 18888 106577 129231 129231 1 VKLTAELIEQAAQYTNAVR Unmodified 2117.1481 0.14806781 584 P09661 SNRPA1 U2 small nuclear ribonucleoprotein A' yes yes 0 0 0 1 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 78.336 78.268 3 2.6874E-41 28526 20211116_3441_TMUAki_TMT10x_S_F3 214.26 197.96 20281000 32064000 43473 24303000 26491000 37327000 25460000 25991000 24006000 25314000 26957000 18883000 29890000 1692100 25536000 25370000 36968000 25834000 26978000 24590000 24751000 25913000 3 3 1 3 3 3 3 3 3 3 3 12225000 17741000 43473 14724000 12026000 25824000 15577000 14999000 13596000 14549000 15939000 11383000 16543000 1025900 15400000 11621000 25380000 15553000 15783000 14001000 14227000 15303000 2 2 1 2 2 2 2 2 2 2 2 8055900 14324000 0 9579000 14466000 11503000 9882600 10992000 10410000 10766000 11018000 7500100 13348000 666230 10136000 13749000 11588000 10280000 11195000 10589000 10524000 10610000 1 1 0 1 1 1 1 1 1 1 1 7230600000 3965100000 3265500000 20551 584 18889 106578;106579;106580 129232;129233;129234 129234 3 VKPAPDETSFSEALLK Unmodified 1730.9091 0.90906631 1575 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 0 1 By MS/MS By MS/MS 6.69 1.31 2 1 2 6 5 5 11 60.564 60.722 2;3 1.0224E-14 19610 20211116_3435_TMUAki_TMT10x_P_F7 140.31 107.08 349390000 594830000 4371300 593090000 424660000 575560000 377470000 365720000 433770000 412770000 442630000 325340000 555030000 23120000 604910000 406170000 582710000 387090000 383830000 439140000 401200000 426710000 20 20 7 20 20 20 20 20 20 20 20 173400000 340100000 4226600 311680000 266600000 411760000 251810000 205510000 248110000 225920000 247620000 161480000 317240000 18405000 321470000 255430000 408660000 256080000 219960000 252550000 219810000 238890000 6 6 3 6 6 6 6 6 6 6 6 175990000 254730000 144700 281410000 158060000 163800000 125660000 160210000 185670000 186850000 195010000 163860000 237790000 4714900 283440000 150740000 174050000 131010000 163870000 186590000 181390000 187830000 14 14 4 14 14 14 14 14 14 14 14 26917000000 14940000000 11977000000 20552 1575 18890 106581;106582;106583;106584;106585;106586;106587;106588;106589;106590;106591;106592;106593;106594;106595;106596 129235;129236;129237;129238;129239;129240;129241;129242;129243;129244;129245;129246;129247;129248;129249;129250;129251;129252;129253 129237 19 VKPAPDETSFSEALLKR Unmodified 1887.0102 0.010177341 1575 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 0 2 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 53.158 53.4 4 9.6425E-43 16611 20211116_3435_TMUAki_TMT10x_P_F7 221.13 205.24 91016000 148900000 458010 129960000 144740000 275950000 125740000 316400000 231890000 203360000 167210000 84740000 138870000 7693900 136100000 138260000 273020000 131830000 316260000 228970000 203270000 163310000 10 10 6 10 10 10 10 10 10 10 10 64506000 103790000 310690 85653000 116840000 242520000 103980000 242550000 174870000 149220000 120260000 60056000 96784000 5339500 91007000 111660000 237390000 108340000 243810000 172860000 149580000 117700000 6 6 2 6 6 6 6 6 6 6 6 26509000 45102000 147320 44306000 27893000 33427000 21759000 73843000 57016000 54142000 46958000 24684000 42082000 2354500 45093000 26599000 35632000 23483000 72449000 56104000 53689000 45610000 4 4 4 4 4 4 4 4 4 4 4 12995000000 7183800000 5811300000 20553 1575 18891 106597;106598;106599;106600;106601;106602 129254;129255;129256;129257;129258;129259;129260;129261;129262;129263 129257 10 VKPFMTGAAEQIK Oxidation (M) 1434.7541 0.754086 656 P13693;P13693-2;Q56UQ5 TPT1 Translationally-controlled tumor protein;TPT1-like protein yes no 0 0 1 1 By MS/MS 8 0 1 1 44.514 44.67 3 0.00025941 11974 20211116_3436_TMUAki_TMT10x_P_F8 83.692 62.739 1149800 1650400 4130.7 2257500 2394300 2414100 1314100 1466000 1930300 1366700 1546500 1070600 1542300 116610 2262500 2268900 2428300 1408500 1535400 1923100 1338900 1503800 1 1 1 1 1 1 1 1 1 1 1 1149800 1650400 4130.7 2257500 2394300 2414100 1314100 1466000 1930300 1366700 1546500 1070600 1542300 116610 2262500 2268900 2428300 1408500 1535400 1923100 1338900 1503800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72303000 72303000 0 20554 656 18892 106603 129264 129264 718 1 VKPFMTGAAEQIKHILANFK Oxidation (M) 2258.2245 0.22454399 656 P13693;P13693-2;Q56UQ5 TPT1 Translationally-controlled tumor protein;TPT1-like protein yes no 0 0 1 2 By MS/MS By MS/MS 7 0 2 1 1 74.019 74.195 5 9.4525E-13 25330 20211116_3435_TMUAki_TMT10x_P_F7 129.98 121.69 24392000 37883000 4705 42788000 20738000 34000000 21665000 21913000 25162000 24102000 22690000 22709000 35368000 1674700 43173000 19888000 34908000 22036000 22955000 25358000 23449000 21965000 5 5 1 5 5 5 5 5 5 5 5 16120000 22460000 4705 24763000 12334000 24011000 12767000 13557000 15060000 15129000 14148000 15008000 20966000 1144400 25089000 11828000 24272000 12998000 14358000 15188000 14711000 13676000 3 3 1 3 3 3 3 3 3 3 3 8271900 15423000 0 18024000 8403600 9989700 8898300 8356100 10103000 8973100 8541700 7700700 14401000 530250 18084000 8060000 10636000 9037300 8596800 10170000 8738100 8288200 2 2 0 2 2 2 2 2 2 2 2 3586100000 1683300000 1902800000 20555 656 18893 106604;106605 129265;129266;129267;129268;129269 129265 718 5 VKPFVVR Unmodified 843.53306 0.53305825 3301 Q9Y4L1;Q9Y4L1-2 HYOU1 Hypoxia up-regulated protein 1 yes no 0 0 0 1 By MS/MS By MS/MS 3.33 1.11 2 1 2 1 2 4 38.799 38.825 3 0.02212 12705 20211116_3441_TMUAki_TMT10x_S_F3 73.616 64.844 7503400 11934000 148400 11982000 11484000 11495000 8994400 9027000 8738100 9043800 10565000 6987600 11136000 816140 12213000 10958000 11685000 9245600 9303100 8965500 8831900 10135000 5 5 5 5 5 5 5 5 5 5 5 3900700 5962600 50582 6177700 7213400 7873000 4855200 4850000 4625800 4716300 5508600 3632300 5564500 416930 6312400 6860300 7848000 5041000 5079700 4747300 4611700 5286600 1 1 1 1 1 1 1 1 1 1 1 3602700 5971400 97815 5804200 4271100 3622300 4139200 4177000 4112300 4327400 5056000 3355200 5571400 399210 5900400 4097900 3837200 4204600 4223400 4218200 4220200 4848100 4 4 4 4 4 4 4 4 4 4 4 420220000 232130000 188090000 20556 3301 18894 106606;106607;106608;106609;106610;106611 129270;129271;129272;129273;129274;129275 129273 6 VKPPVRNPQNSTVLAR Unmodified 1775.0166 0.016600123 1632 Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;Q13428-6;Q13428-7;Q13428-5 TCOF1 Treacle protein yes no 0 0 0 2 By MS/MS 4.5 0.5 1 1 2 32.635 32.618 4 1.2051E-46 7706 20211116_3433_TMUAki_TMT10x_P_F5 244.05 204.32 1877400 2802500 30669 2862600 3986900 3585400 2264200 1668200 2135700 1579400 2367400 1748200 2615200 213770 2926900 3781400 3564900 2382800 1790200 2186500 1546200 2276500 2 2 2 2 2 2 2 2 2 2 2 1877400 2802500 30669 2862600 3986900 3585400 2264200 1668200 2135700 1579400 2367400 1748200 2615200 213770 2926900 3781400 3564900 2382800 1790200 2186500 1546200 2276500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 338370000 338370000 0 20557 1632 18895 106612;106613 129276;129277 129277 2 VKPQPPLSDAYLSGMPAK Oxidation (M) 1913.9921 0.99208444 1047 P46379;P46379-2;P46379-3;P46379-4;P46379-5 BAG6 Large proline-rich protein BAG6 yes no 0 0 1 1 By MS/MS 1 0 1 1 52.19 51.909 3 8.2541E-05 16862 20211116_3439_TMUAki_TMT10x_S_F1 78.021 62.256 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20558 1047 18896 106614 129278 129278 1352 1 VKPTLIAVRPPVPLPAPSHPASTNEPIVLED Unmodified 3253.8074 0.80744878 384 O94776;O94776-2 MTA2 Metastasis-associated protein MTA2 yes no 0 0 0 2 By MS/MS By MS/MS 2.5 2.5 3 2 1 4 2 68.59 68.491 4;5 4.4838E-27 21527 20211116_3428_TMUAki_TMT10x_P_F1 150.95 141.49 29644000 50520000 236840 48251000 32301000 45507000 31525000 29295000 27580000 31268000 36682000 27602000 47132000 2029900 49343000 30958000 46165000 31896000 30662000 28554000 30456000 35104000 11 11 5 11 11 11 11 11 11 11 11 14881000 23893000 198380 22517000 13359000 26951000 15763000 13349000 12639000 14229000 15940000 13856000 22290000 1302200 23134000 12875000 26877000 15766000 14285000 13112000 13861000 15274000 6 6 3 6 6 6 6 6 6 6 6 14763000 26627000 38453 25734000 18942000 18556000 15763000 15946000 14941000 17038000 20743000 13746000 24842000 727700 26209000 18083000 19288000 16130000 16377000 15442000 16596000 19830000 5 5 2 5 5 5 5 5 5 5 5 10732000000 7183700000 3548500000 20559 384 18897 106615;106616;106617;106618;106619;106620 129279;129280;129281;129282;129283;129284;129285;129286;129287;129288;129289 129282 11 VKPYLPQICGTVLWR Unmodified 1829.0022 0.002195612 345 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 0 1 By MS/MS 7 0 1 1 70.204 70.481 3 1.5958E-09 24246 20211116_3446_TMUAki_TMT10x_S_F7 126.77 86.704 13768000 24057000 588380 24825000 17435000 12779000 14883000 10658000 10400000 12890000 16137000 12824000 22450000 1741200 25091000 16689000 13713000 15091000 11011000 10980000 12497000 15390000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13768000 24057000 588380 24825000 17435000 12779000 14883000 10658000 10400000 12890000 16137000 12824000 22450000 1741200 25091000 16689000 13713000 15091000 11011000 10980000 12497000 15390000 3 3 3 3 3 3 3 3 3 3 3 553800000 0 553800000 20560 345 18898 106621 129290;129291;129292 129291 3 VKTDTVLILCR Unmodified 1316.7486 0.74860669 2855 Q9HB71;Q9HB71-3 CACYBP Calcyclin-binding protein yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 51.728 51.548 3 0.00093023 14926 20211116_3440_TMUAki_TMT10x_S_F2 80.31 62.149 9301200 18077000 82158 16067000 16162000 18799000 10548000 13104000 13486000 12004000 12659000 8660900 16860000 943790 16574000 15361000 18855000 11084000 13578000 13561000 11770000 12237000 3 3 3 3 3 3 3 3 3 3 3 6807200 13288000 58229 11653000 13702000 16175000 8594500 9295800 9780600 8861600 9066800 6338600 12393000 715200 12071000 13013000 16045000 9021500 9785500 9872800 8672500 8768500 2 2 2 2 2 2 2 2 2 2 2 2493900 4789100 23930 4414400 2459800 2624100 1953800 3808200 3705100 3142900 3592300 2322300 4467300 228590 4503100 2347300 2810300 2062500 3792200 3688700 3097000 3468800 1 1 1 1 1 1 1 1 1 1 1 700780000 564460000 136320000 20561 2855 18899 106622;106623;106624;106625 129293;129294;129295;129296 129296 4 VKTPQPK Unmodified 796.48069 0.48068833 694 P16402 HIST1H1D Histone H1.3 yes yes 0 0 0 1 By MS/MS 1 0 1 1 30.448 30.448 3 0.067171 6181 20211116_3428_TMUAki_TMT10x_P_F1 51.059 17.263 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20562 694 18900 106626 129297 129297 1 VKVDEVGGEALGR Unmodified 1327.7096 0.70957864 53 CON__Q3SX09;CON__P02070 yes no 0 0 0 1 By MS/MS By MS/MS 4.17 0.687 1 3 2 3 3 40.71 40.713 3 8.9213E-10 13420 20211116_3441_TMUAki_TMT10x_S_F3 138.01 117.35 + 10634000 16256000 278340 19586000 37936000 30836000 18647000 37933000 53013000 30372000 26502000 9903000 15181000 1523400 19914000 35907000 30879000 20987000 37984000 51487000 29974000 26386000 5 5 5 5 5 5 5 5 5 5 5 7415400 11154000 261420 13150000 34892000 28225000 14551000 24824000 34804000 19800000 17274000 6906400 10416000 1243300 13499000 32961000 27748000 16450000 25260000 33899000 19544000 17206000 3 3 3 3 3 3 3 3 3 3 3 3218100 5101400 16921 6436300 3043700 2610600 4095600 13110000 18209000 10572000 9228400 2996500 4765200 280130 6414600 2945900 3131400 4536300 12723000 17588000 10430000 9180300 2 2 2 2 2 2 2 2 2 2 2 2980200000 2090000000 890220000 20563 53 18901 106627;106628;106629;106630;106631;106632 129298;129299;129300;129301;129302;129303;129304 129302 7 VKVEEEEEEKVAEEEETSVK Unmodified 2348.1119 0.11186104 3254 Q9Y2X3 NOP58 Nucleolar protein 58 yes yes 0 0 0 2 By MS/MS By MS/MS 1 0 2 1 1 51.823 51.682 4 2.4636E-13 16811 20211116_3439_TMUAki_TMT10x_S_F1 138.66 124.93 11112000 21085000 17363 21911000 16664000 21949000 11885000 23770000 26390000 20989000 20205000 10346000 19677000 618120 22295000 15856000 22399000 12755000 23993000 25993000 20614000 19683000 3 3 1 3 3 3 3 3 3 3 3 4512400 8308500 17363 8376300 11798000 16944000 8615900 10278000 10623000 8423200 8086800 4201600 7753000 492330 8668500 11234000 16583000 8968000 10731000 10630000 8303000 7879500 1 1 1 1 1 1 1 1 1 1 1 6599300 12776000 0 13534000 4865800 5005400 3269500 13492000 15767000 12566000 12118000 6144200 11924000 125790 13626000 4622300 5816000 3786700 13262000 15364000 12311000 11803000 2 2 0 2 2 2 2 2 2 2 2 2718700000 2223400000 495340000 20564 3254 18902 106633;106634 129305;129306;129307 129306 3 VKVEPSHDASK Unmodified 1195.6197 0.619701 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 29.193 29.18 4 0.00025961 6365 20211116_3433_TMUAki_TMT10x_P_F5 91.858 72.726 273500 478570 3688 400900 335520 511750 272650 221950 241180 232630 321860 254680 446270 26981 416130 320350 507990 278870 240610 249600 226750 307990 1 1 1 1 1 1 1 1 1 1 1 273500 478570 3688 400900 335520 511750 272650 221950 241180 232630 321860 254680 446270 26981 416130 320350 507990 278870 240610 249600 226750 307990 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19155000 19155000 0 20565 755 18903 106635;106636 129308 129308 1 VKVETYNDESR Unmodified 1338.6416 0.64155866 828 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 32.214 32.199 3 1.3187E-05 7261 20211116_3431_TMUAki_TMT10x_P_F4 107.93 78.015 1579600 2513400 0 2580500 2736800 2854700 1821300 1344600 1439000 1351600 1987400 1470700 2345600 140020 2631900 2600600 2857300 1883400 1443500 1500100 1319800 1900200 1 1 0 1 1 1 1 1 1 1 1 1579600 2513400 0 2580500 2736800 2854700 1821300 1344600 1439000 1351600 1987400 1470700 2345600 140020 2631900 2600600 2857300 1883400 1443500 1500100 1319800 1900200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 115860000 115860000 0 20566 828 18904 106637;106638 129309 129309 1 VKVGVNGFGR Unmodified 1031.5876 0.58761301 489 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 38.534 38.419 3 0.0011367 12383 20211116_3441_TMUAki_TMT10x_S_F3 82.261 68.266 2808800 4604700 19977 3129300 5237900 5397900 3365500 4343700 4943900 3949900 4224300 2615400 4291100 273190 3330500 4975700 5335400 3560600 4457800 4935000 3873900 4097300 2 2 1 2 2 2 2 2 2 2 2 1776800 2744900 19977 1820400 3926900 4315800 2423600 2764000 3162600 2436100 2639800 1654500 2557800 196040 1959700 3728700 4207800 2559800 2878800 3166500 2392800 2562700 1 1 1 1 1 1 1 1 1 1 1 1032000 1859800 0 1308900 1311100 1082200 941930 1579700 1781300 1513800 1584600 960810 1733300 77152 1370800 1247000 1127600 1000700 1579100 1768500 1481100 1534700 1 1 0 1 1 1 1 1 1 1 1 404030000 311800000 92231000 20567 489 18905 106639;106640 129310;129311 129311 2 VKWGDIEFPPPFGR Unmodified 1643.846 0.84601255 1200 P53396;P53396-2 ACLY ATP-citrate synthase yes no 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 76.793 76.709 3 2.9867E-09 25184 20211116_3440_TMUAki_TMT10x_S_F2 128.73 109.41 19166000 29053000 63273 28482000 21741000 22702000 23750000 12641000 11349000 14108000 20846000 17845000 27107000 1557500 29010000 20893000 23258000 23602000 13405000 12426000 13718000 19815000 4 4 1 4 4 4 4 4 4 4 4 9673800 13912000 63273 13345000 9494300 14082000 12302000 6141900 5332400 6697500 10090000 9007800 12979000 856720 13665000 9177900 14122000 12116000 6662000 5898600 6518200 9586300 2 2 1 2 2 2 2 2 2 2 2 9492200 15141000 0 15137000 12247000 8619600 11449000 6499500 6017000 7410300 10756000 8837200 14128000 700770 15345000 11715000 9135500 11486000 6742500 6527100 7199800 10229000 2 2 0 2 2 2 2 2 2 2 2 1747200000 633100000 1114100000 20568 1200 18906 106641;106642;106643 129312;129313;129314;129315 129314 4 VLAAVYK Unmodified 762.46398 0.46397563 482;590 P04075;P04075-2;P05062;P09972 ALDOA;ALDOB;ALDOC Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase B;Fructose-bisphosphate aldolase C no no 0 0 0 0 By MS/MS 1 0 1 1 51.885 51.604 2 0.0091846 16725 20211116_3439_TMUAki_TMT10x_S_F1 99.511 10.884 3662200 6141400 42642 6271800 2728800 3736700 3626200 4310200 3692200 3827900 4381400 3410200 5731000 330290 6351100 2641600 3975900 3633300 4338900 3777700 3758400 4205200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3662200 6141400 42642 6271800 2728800 3736700 3626200 4310200 3692200 3827900 4381400 3410200 5731000 330290 6351100 2641600 3975900 3633300 4338900 3777700 3758400 4205200 1 1 1 1 1 1 1 1 1 1 1 84501000 0 84501000 20569 482;590 18907 106644 129316 129316 1 VLAEDEELYGDFEDLETGDVHK Unmodified 2522.1337 0.13365911 1728 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 77.998 77.972 3 1.129E-10 25463 20211116_3428_TMUAki_TMT10x_P_F1 112.44 103.84 10574000 16568000 81825 14273000 10008000 15428000 11650000 8908300 8721400 9977200 12783000 9846200 15451000 945000 14740000 9642400 15499000 11641000 9418400 9144800 9700200 12206000 3 3 3 3 3 3 3 3 3 3 3 6707300 10450000 22611 9019200 5664800 11307000 7139700 5680400 5414600 6506500 8013800 6245400 9745900 562560 9336300 5470200 11252000 7111600 6084100 5676200 6320500 7650200 2 2 2 2 2 2 2 2 2 2 2 3866800 6117800 59214 5254100 4343100 4120600 4510700 3227900 3306700 3470700 4769600 3600800 5705300 382440 5404100 4172200 4247600 4529400 3334200 3468600 3379700 4555700 1 1 1 1 1 1 1 1 1 1 1 1644400000 763800000 880560000 20570 1728 18908 106645;106646 129317;129318;129319 129317 3 VLAELYVSDREGSDATGDGTK Unmodified 2182.039 0.038970866 244 O43776;O43776-2 NARS Asparagine--tRNA ligase, cytoplasmic yes no 0 0 0 1 By MS/MS By MS/MS 2.25 0.433 3 1 3 1 57.787 57.545 3 2.2868E-19 18650 20211116_3429_TMUAki_TMT10x_P_F2 151.82 128.25 9802100 16144000 209260 16478000 16474000 25445000 14660000 14870000 14730000 14451000 14504000 9128300 15065000 1101100 16921000 15763000 25131000 14968000 15640000 14974000 14130000 13999000 3 3 3 3 3 3 3 3 3 3 3 9802100 16144000 209260 16478000 16474000 25445000 14660000 14870000 14730000 14451000 14504000 9128300 15065000 1101100 16921000 15763000 25131000 14968000 15640000 14974000 14130000 13999000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1238200000 1238200000 0 20571 244 18909 106647;106648;106649;106650 129320;129321;129322;129323;129324 129320 5 VLAGETLSVNDPPDVLDR Unmodified 1908.9793 0.97927114 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 0 By MS/MS By MS/MS 2.81 1.12 4 8 12 4 3 21 10 64.31 64.177 2;3 1.2418E-63 21780 20211116_3440_TMUAki_TMT10x_S_F2 273.72 243.39 92857000 158970000 1736900 156960000 102220000 146180000 115640000 86309000 76559000 88394000 113940000 86469000 148330000 8992200 160110000 98425000 148240000 115390000 90837000 80922000 86244000 108750000 34 34 18 34 34 34 34 34 34 34 34 52506000 92988000 710190 90788000 56554000 105560000 70070000 51943000 45237000 50254000 63116000 48892000 86759000 4867000 92995000 54596000 105420000 69599000 55468000 47742000 49151000 60333000 21 21 11 21 21 21 21 21 21 21 21 40351000 65983000 1026700 66176000 45665000 40615000 45569000 34366000 31322000 38139000 50820000 37577000 61570000 4125200 67115000 43829000 42812000 45787000 35369000 33180000 37093000 48420000 13 13 7 13 13 13 13 13 13 13 13 33895000000 19915000000 13980000000 20572 1576 18910 106651;106652;106653;106654;106655;106656;106657;106658;106659;106660;106661;106662;106663;106664;106665;106666;106667;106668;106669;106670;106671;106672;106673;106674;106675;106676;106677;106678;106679;106680;106681 129325;129326;129327;129328;129329;129330;129331;129332;129333;129334;129335;129336;129337;129338;129339;129340;129341;129342;129343;129344;129345;129346;129347;129348;129349;129350;129351;129352;129353;129354;129355;129356;129357;129358;129359;129360;129361 129354 37 VLAGETLSVNDPPDVLDRQK Unmodified 2165.1328 0.13281167 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 1 By MS/MS 5 0 1 1 60.852 60.944 3 1.7765E-11 18008 20211116_3444_TMUAki_TMT10x_S_F5 122.14 112.22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20573 1576 18911 106682 129362 129362 1 VLAGLIR Unmodified 740.49086 0.49085908 2117 Q86VV8;Q86VV8-4;Q86VV8-3;Q86VV8-2 RTTN Rotatin yes no 0 0 0 0 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 3 4 57.274 57.039 2 0.0094501 17162 20211116_3440_TMUAki_TMT10x_S_F2 99.228 0 14836000 23849000 0 24373000 20594000 20437000 14721000 16389000 16416000 15219000 18922000 13811000 22256000 993770 24768000 19578000 20971000 15291000 16833000 16715000 14912000 18175000 5 5 0 5 5 5 5 5 5 5 5 6531000 10442000 0 10827000 13428000 13947000 7839200 7366600 7315900 6726000 8440000 6079900 9745300 504460 11065000 12726000 13868000 8227700 7802700 7505500 6595300 8107000 2 2 0 2 2 2 2 2 2 2 2 8304700 13407000 0 13545000 7166200 6489800 6881500 9022800 9100000 8492800 10482000 7731000 12511000 489300 13703000 6852200 7103500 7063700 9030100 9209600 8316300 10068000 3 3 0 3 3 3 3 3 3 3 3 2480200000 1269700000 1210500000 20574 2117 18912 106683;106684;106685;106686;106687;106688;106689 129363;129364;129365;129366;129367;129368 129366 6 VLAGQTLDINMAGEPKPDRPK Oxidation (M) 2265.1787 0.17871601 3158 Q9UKM9;Q9UKM9-2 RALY RNA-binding protein Raly yes no 0 0 1 2 By MS/MS By MS/MS 6.56 0.831 1 3 4 1 5 4 46.882 47.163 4;5 1.9076E-26 14716 20211116_3446_TMUAki_TMT10x_S_F7 170.53 131.14 25930000 42957000 417770 47059000 49106000 57965000 32270000 54118000 57757000 44606000 42589000 24146000 40099000 2422800 47882000 46684000 58292000 34402000 54933000 57104000 43957000 41554000 9 9 5 9 9 9 9 9 9 9 9 15994000 25704000 209230 27964000 40183000 49085000 24581000 32577000 34684000 26387000 25484000 14893000 23993000 1447700 28684000 38149000 48331000 26062000 33770000 34517000 26026000 24868000 5 5 2 5 5 5 5 5 5 5 5 9936100 17253000 208540 19095000 8922700 8879800 7688700 21541000 23073000 18219000 17105000 9252800 16106000 975120 19197000 8535200 9960800 8339800 21163000 22588000 17931000 16686000 4 4 3 4 4 4 4 4 4 4 4 11063000000 6392900000 4670600000 20575 3158 18913 106690;106691;106692;106693;106694;106695;106696;106697;106698 129369;129370;129371;129372;129373;129374;129375;129376;129377 129377 3168 9 VLAGQTLDINMAGEPKPDRPK Unmodified 2249.1838 0.18380139 3158 Q9UKM9;Q9UKM9-2 RALY RNA-binding protein Raly yes no 0 0 0 2 By MS/MS By MS/MS 7.4 0.49 3 2 2 3 52.775 53.119 4;5 9.7744E-76 14913 20211116_3447_TMUAki_TMT10x_S_F8 265.64 219.02 38230000 63778000 750180 72863000 51485000 44014000 39264000 30884000 27088000 29992000 48196000 35599000 59546000 3672800 73259000 49079000 46323000 40090000 32037000 28839000 29328000 45839000 7 7 6 7 7 7 7 7 7 7 7 13578000 23499000 519680 26904000 29051000 26577000 20356000 13415000 12416000 12864000 18312000 12646000 21940000 1826700 27201000 27669000 26799000 20857000 14287000 13187000 12586000 17482000 3 3 3 3 3 3 3 3 3 3 3 24652000 40279000 230500 45959000 22433000 17437000 18908000 17470000 14672000 17128000 29884000 22952000 37606000 1846000 46058000 21411000 19524000 19232000 17750000 15651000 16742000 28357000 4 4 3 4 4 4 4 4 4 4 4 5921700000 2567700000 3354000000 20576 3158 18913 106699;106700;106701;106702;106703 129378;129379;129380;129381;129382;129383;129384 129384 7 VLALSVETDYTFPLAEK Unmodified 1894.9928 0.99279594 508 P05388;P05388-2 RPLP0 60S acidic ribosomal protein P0 yes no 0 0 0 0 By MS/MS 4 0 1 1 79.619 79.629 3 0.00013223 26533 20211116_3431_TMUAki_TMT10x_P_F4 74.89 56.752 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20577 508 18914 106704 129385 129385 1 VLAMSGDPNYLHR Oxidation (M) 1487.7191 0.71909747 869 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 1 0 By MS/MS By MS/MS 5.67 1.11 1 2 1 2 4 2 38.214 38.432 3 7.4494E-10 8876 20211116_3444_TMUAki_TMT10x_S_F5 137.4 122.83 6420800 8938700 69785 10746000 18973000 17667000 9366400 12522000 13214000 9166600 10201000 5978000 8347500 661220 10938000 17948000 17455000 10122000 12891000 13167000 9090900 9934200 8 8 6 8 8 8 8 8 8 8 8 5667200 7706800 59639 9240000 18239000 16867000 8734100 11048000 11847000 7947800 8831000 5276200 7197000 590320 9432100 17246000 16581000 9452700 11434000 11809000 7890000 8612300 6 6 5 6 6 6 6 6 6 6 6 753600 1231800 10145 1505600 734820 800190 632250 1474400 1366900 1218800 1370400 701740 1150500 70896 1506100 702570 873840 669430 1457400 1358500 1200900 1321900 2 2 1 2 2 2 2 2 2 2 2 690120000 576400000 113720000 20578 869 18915 106705;106706;106707;106708;106709;106710 129386;129387;129388;129389;129390;129391;129392;129393 129392 1043 8 VLAMSGDPNYLHR Unmodified 1471.7242 0.72418285 869 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 0 0 By MS/MS By MS/MS 6.8 0.748 2 2 1 2 3 46.539 46.785 3 2.7277E-15 14561 20211116_3446_TMUAki_TMT10x_S_F7 175.74 135.83 4094200 7748000 113080 8408000 4949900 3714100 3793300 5714000 5919700 5549400 6553400 3812900 7232200 456800 8460800 4724000 4118100 3974000 5703700 5951700 5426600 6302200 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4094200 7748000 113080 8408000 4949900 3714100 3793300 5714000 5919700 5549400 6553400 3812900 7232200 456800 8460800 4724000 4118100 3974000 5703700 5951700 5426600 6302200 3 3 3 3 3 3 3 3 3 3 3 371960000 99139000 272820000 20579 869 18915 106711;106712;106713;106714;106715 129394;129395;129396;129397;129398 129396 5 VLANPGNSQVAR Unmodified 1224.6575 0.65748349 1739 Q14974 KPNB1 Importin subunit beta-1 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 33.522 33.586 2 6.9856E-24 8258 20211116_3433_TMUAki_TMT10x_P_F5 242.35 184.88 584750 882210 0 842440 980680 923830 677700 520870 590680 465440 709620 544370 823050 42131 863450 931930 927060 700570 548260 608940 456850 680860 2 2 0 2 2 2 2 2 2 2 2 479800 711560 0 700230 876730 842260 561170 435340 502170 383780 584350 446660 663920 34966 717280 832040 840140 583890 461620 516370 376940 561150 1 1 0 1 1 1 1 1 1 1 1 104950 170650 0 142200 103960 81564 116530 85530 88511 81663 125270 97710 159130 7165.3 146170 99894 86922 116680 86645 92575 79916 119710 1 1 0 1 1 1 1 1 1 1 1 39406000 28814000 10592000 20580 1739 18916 106716;106717 129399;129400 129399 2 VLAPILPDNFSTPTGSR Unmodified 1783.9468 0.9468488 2907 Q9NQS7;Q9NQS7-2 INCENP Inner centromere protein yes no 0 0 0 0 By MS/MS 8 0 1 1 73.586 73.618 3 1.1998E-06 23780 20211116_3436_TMUAki_TMT10x_P_F8 93.51 85.285 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20581 2907 18917 106718 129401 129401 1 VLAQNSGFDLQETLVK Unmodified 1760.9309 0.93086439 982 P40227;P40227-2 CCT6A T-complex protein 1 subunit zeta yes no 0 0 0 0 By MS/MS By MS/MS 5.88 1.05 1 6 4 4 1 9 7 72.531 72.608 2;3 5.3199E-162 22768 20211116_3434_TMUAki_TMT10x_P_F6 426.61 378.72 118510000 198470000 626730 197450000 146210000 193620000 141280000 144390000 138650000 141380000 154430000 110340000 185190000 9845900 201450000 140050000 196370000 143480000 149200000 141730000 138200000 148480000 17 17 5 17 17 17 17 17 17 17 17 63290000 103160000 305030 104100000 75742000 133890000 80618000 74328000 71164000 73287000 79356000 58926000 96258000 5025500 106580000 72722000 133220000 81227000 78547000 73102000 71619000 76298000 10 10 2 10 10 10 10 10 10 10 10 55221000 95315000 321700 93354000 70470000 59727000 60661000 70061000 67488000 68092000 75069000 51417000 88932000 4820400 94872000 67325000 63153000 62255000 70653000 68628000 66584000 72182000 7 7 3 7 7 7 7 7 7 7 7 33681000000 16977000000 16704000000 20582 982 18918 106719;106720;106721;106722;106723;106724;106725;106726;106727;106728;106729;106730;106731;106732;106733;106734 129402;129403;129404;129405;129406;129407;129408;129409;129410;129411;129412;129413;129414;129415;129416;129417;129418;129419;129420;129421 129410 20 VLAQQGEYSEAIPILR Unmodified 1785.9625 0.96249887 1704 Q14318;Q14318-2;Q14318-3 FKBP8 Peptidyl-prolyl cis-trans isomerase FKBP8 yes no 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 69.222 69.31 3 2.1236E-06 21421 20211116_3434_TMUAki_TMT10x_P_F6 91.695 70.138 4141200 6232000 0 5543800 4527500 6869300 5024600 3903400 3853200 4380200 5882000 3855600 5812500 324910 5724000 4352100 6849600 5034400 4132700 4043200 4258300 5611400 1 1 0 1 1 1 1 1 1 1 1 4141200 6232000 0 5543800 4527500 6869300 5024600 3903400 3853200 4380200 5882000 3855600 5812500 324910 5724000 4352100 6849600 5034400 4132700 4043200 4258300 5611400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 767170000 767170000 0 20583 1704 18919 106735;106736 129422;129423 129423 2 VLAQYYTVTDEHHR Unmodified 1730.8376 0.8376327 3002 Q9NX58 LYAR Cell growth-regulating nucleolar protein yes yes 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 39.132 39.275 4 0.026718 9269 20211116_3445_TMUAki_TMT10x_S_F6 44.132 36.221 1355900 2226700 50636 2327100 1391300 1259300 1591400 1438900 1487400 1366600 1867600 1262900 2078100 160100 2351000 1342100 1352800 1600500 1451800 1531200 1337700 1789800 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1355900 2226700 50636 2327100 1391300 1259300 1591400 1438900 1487400 1366600 1867600 1262900 2078100 160100 2351000 1342100 1352800 1600500 1451800 1531200 1337700 1789800 3 3 3 3 3 3 3 3 3 3 3 58683000 0 58683000 20584 3002 18920 106737;106738 129424;129425;129426 129426 3 VLATAFDTTLGGR Unmodified 1320.7038 0.70376498 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 0 By MS/MS By MS/MS 7 1 1 2 3 4 5 5 67.403 67.534 2;3 4.7884E-44 22986 20211116_3446_TMUAki_TMT10x_S_F7 289.67 239.54 66336000 115160000 710450 112320000 85600000 101340000 78772000 82830000 73340000 83262000 92018000 61769000 107450000 6148400 114620000 81930000 103500000 80091000 85163000 75512000 81301000 88188000 13 13 8 13 13 13 13 13 13 13 13 30023000 48938000 166560 48319000 38365000 61222000 39049000 35766000 31401000 35440000 39266000 27954000 45662000 2654400 49530000 36806000 61001000 39337000 37639000 32559000 34626000 37635000 7 7 4 7 7 7 7 7 7 7 7 36314000 66223000 543890 64003000 47235000 40115000 39723000 47064000 41939000 47822000 52752000 33814000 61785000 3494000 65093000 45124000 42496000 40754000 47523000 42952000 46675000 50553000 6 6 4 6 6 6 6 6 6 6 6 13907000000 8515300000 5391700000 20585 916 18921 106739;106740;106741;106742;106743;106744;106745;106746;106747;106748 129427;129428;129429;129430;129431;129432;129433;129434;129435;129436;129437;129438;129439;129440;129441 129436 15 VLATETVSHK Unmodified 1083.5924 0.59242362 2211 Q8N999;Q8N999-3 C12orf29 Uncharacterized protein C12orf29 yes no 0 0 0 0 By MS/MS 5 0 1 1 33.991 34.168 3 0.0058178 7173 20211116_3444_TMUAki_TMT10x_S_F5 66.321 46.157 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20586 2211 18922 106749 129442 129442 1 VLATVTKPVGGDK Unmodified 1283.7449 0.74490152 1499 Q02878 RPL6 60S ribosomal protein L6 yes yes 0 0 0 1 By MS/MS By MS/MS 5 2.9 1 1 2 1 2 3 46.628 46.806 3 1.0444E-08 14737 20211116_3439_TMUAki_TMT10x_S_F1 119.62 83.97 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20587 1499 18923 106750;106751;106752;106753;106754 129443;129444;129445;129446;129447 129445 5 VLAVNQENEHLMEDYEK Oxidation (M) 2075.947 0.94698474 235 O43707;O43707-2 ACTN4 Alpha-actinin-4 yes no 0 0 1 0 By MS/MS 3 0 1 1 46.972 46.97 3 0.00024303 14769 20211116_3430_TMUAki_TMT10x_P_F3 72.433 62.057 1301100 2185400 8922.3 2668700 4323600 4015100 2130500 2213500 2482000 1693900 1990100 1211500 2041000 158520 2708500 4091100 3966800 2286600 2325900 2492100 1675800 1935000 1 1 1 1 1 1 1 1 1 1 1 1301100 2185400 8922.3 2668700 4323600 4015100 2130500 2213500 2482000 1693900 1990100 1211500 2041000 158520 2708500 4091100 3966800 2286600 2325900 2492100 1675800 1935000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 62778000 62778000 0 20588 235 18924 106755 129448 129448 190 1 VLCELADLQDK Unmodified 1302.649 0.64895222 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 1.12 4 4 4 4 7 9 72.565 72.438 2;3 8.1989E-12 23422 20211116_3440_TMUAki_TMT10x_S_F2 141.95 105.99 59958000 92377000 578710 124100000 64379000 63967000 54951000 40403000 44170000 45774000 62969000 55831000 86316000 5509500 123460000 61523000 68344000 55898000 42429000 46074000 44484000 60162000 14 14 12 14 14 14 14 14 14 14 14 30879000 46825000 366500 63779000 39556000 44458000 30280000 20148000 22280000 23177000 31594000 28754000 43756000 3006900 63579000 37716000 45937000 30952000 21802000 23347000 22511000 30189000 7 7 6 7 7 7 7 7 7 7 7 29080000 45552000 212210 60320000 24823000 19508000 24670000 20255000 21889000 22597000 31375000 27077000 42560000 2502600 59883000 23807000 22408000 24946000 20626000 22727000 21973000 29973000 7 7 6 7 7 7 7 7 7 7 7 5676200000 2823600000 2852600000 20589 712 18925 106756;106757;106758;106759;106760;106761;106762;106763;106764;106765;106766;106767;106768;106769;106770;106771 129449;129450;129451;129452;129453;129454;129455;129456;129457;129458;129459;129460;129461;129462;129463;129464;129465;129466 129459 18 VLCLAVAVGHVK Unmodified 1264.7326 0.73256269 1381 P62906 RPL10A 60S ribosomal protein L10a yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 60.627 60.738 3 5.5921E-06 17943 20211116_3444_TMUAki_TMT10x_S_F5 104.22 81.104 9918900 16483000 85061 16899000 11153000 13283000 10686000 7683900 7145900 7872100 9663000 9235000 15382000 775120 17157000 10678000 13629000 10754000 8100700 7514000 7680600 9243600 2 2 1 2 2 2 2 2 2 2 2 6233700 9690700 0 9794200 7248600 10661000 7106900 4577800 4101900 4810200 5666000 5803100 9042900 387250 9997300 6937400 10670000 7123300 4968400 4360000 4688400 5417400 1 1 0 1 1 1 1 1 1 1 1 3685200 6792300 85061 7105100 3904000 2621900 3578700 3106100 3044000 3061900 3997000 3431900 6339100 387870 7159300 3740300 2958500 3630500 3132300 3154000 2992200 3826200 1 1 1 1 1 1 1 1 1 1 1 1008500000 702510000 305980000 20590 1381 18926 106772;106773;106774 129467;129468;129469 129469 3 VLCPIIQTADYPINLAAIK Unmodified 2112.1653 0.16529777 2080;308 O75122;O75122-3;Q7Z460;Q7Z460-3;Q7Z460-2;Q7Z460-4;Q7Z460-5 CLASP2;CLASP1 CLIP-associating protein 2;CLIP-associating protein 1 no no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 79.788 79.77 3 7.2327E-24 27651 20211116_3429_TMUAki_TMT10x_P_F2 165.02 150.09 11007000 17630000 73010 14655000 12030000 12718000 12113000 8527700 8184900 9426200 11738000 10248000 16440000 880030 15132000 11534000 12981000 12161000 8908700 8624700 9169100 11213000 3 3 2 3 3 3 3 3 3 3 3 3831900 6335100 44721 4980100 3536200 5873800 3826900 2986900 2983900 3203900 4053300 3568200 5906200 355230 5189600 3400700 5863800 3840500 3189100 3110500 3120100 3876900 1 1 1 1 1 1 1 1 1 1 1 7175000 11295000 28289 9674800 8494200 6844000 8286100 5540800 5201000 6222300 7685000 6680000 10534000 524800 9942000 8133700 7117500 8320400 5719700 5514300 6048900 7336500 2 2 1 2 2 2 2 2 2 2 2 2338800000 1160500000 1178300000 20591 308;2080 18927 106775;106776 129470;129471;129472 129470 3 VLDALFPCVQGGTTAIPGAFGCGK Unmodified 2435.1977 0.19773689 971 P38606;P38606-2 ATP6V1A V-type proton ATPase catalytic subunit A yes no 0 0 0 0 By MS/MS By MS/MS 3 0 4 2 2 80.274 80.217 3;4 2.1888E-11 29294 20211116_3441_TMUAki_TMT10x_S_F3 107.47 100.74 12813000 21027000 49456 19958000 15159000 17608000 15665000 11102000 10496000 11778000 15209000 11930000 19616000 1100200 20400000 14548000 17936000 15704000 11637000 11072000 11476000 14526000 6 6 2 6 6 6 6 6 6 6 6 6748800 10622000 38476 10493000 6489500 11037000 7616400 6007700 5567100 6341000 7932600 6284100 9911100 587360 10722000 6252800 11097000 7603300 6372000 5837200 6179200 7579000 3 3 1 3 3 3 3 3 3 3 3 6064500 10405000 10980 9464600 8669100 6570500 8049000 5094500 4929100 5437500 7276300 5646400 9705200 512840 9678600 8295000 6838900 8100300 5264500 5234300 5296400 6946500 3 3 1 3 3 3 3 3 3 3 3 6086300000 2917700000 3168600000 20592 971 18928 106777;106778;106779;106780 129473;129474;129475;129476;129477;129478 129476 6 VLDAMLPYLINYYGNPHSR Oxidation (M) 2251.1096 0.10957381 3343 Q9Y697;Q9Y697-2;Q9Y697-3 NFS1 Cysteine desulfurase, mitochondrial yes no 0 0 1 0 By MS/MS 2 0 1 1 75.918 75.865 3 4.5607E-05 24801 20211116_3440_TMUAki_TMT10x_S_F2 78.088 62.496 1581300 2506900 29979 2061700 1891000 1678500 1944000 1705100 1441600 1589600 2020200 1472600 2337500 163380 2129000 1816300 1734200 1953500 1728800 1509100 1557200 1930900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1581300 2506900 29979 2061700 1891000 1678500 1944000 1705100 1441600 1589600 2020200 1472600 2337500 163380 2129000 1816300 1734200 1953500 1728800 1509100 1557200 1930900 1 1 1 1 1 1 1 1 1 1 1 409720000 0 409720000 20593 3343 18929 106781 129479 129479 3293 1 VLDAPGGGSVLVMEHMDMR 3 Oxidation (M) 2060.9329 0.93293135 2849 Q9HA64 FN3KRP Ketosamine-3-kinase yes yes 0 0 3 0 By MS/MS 3 0 1 1 45.792 45.451 3 0.0022406 15292 20211116_3441_TMUAki_TMT10x_S_F3 59.281 49.224 301020 529190 0 582930 288620 337150 260720 719370 712110 583250 580170 280270 493990 22895 587220 275920 367220 279890 708040 700020 575240 563750 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 301020 529190 0 582930 288620 337150 260720 719370 712110 583250 580170 280270 493990 22895 587220 275920 367220 279890 708040 700020 575240 563750 1 1 0 1 1 1 1 1 1 1 1 57157000 0 57157000 20594 2849 18930 106782 129480 129480 2974;2975;2976 1 VLDDGELLVQQTK Unmodified 1456.7773 0.77732386 1048 P46459;P46459-2 NSF Vesicle-fusing ATPase yes no 0 0 0 0 By MS/MS 2 0 1 1 66.32 66.094 3 2.1867E-06 20925 20211116_3440_TMUAki_TMT10x_S_F2 110.98 96.287 2043000 3434200 51919 3412400 2379700 2111000 2262700 2382100 2190300 2254400 2736100 1902600 3204400 222480 3463300 2282000 2236900 2299000 2404400 2250800 2207000 2622500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2043000 3434200 51919 3412400 2379700 2111000 2262700 2382100 2190300 2254400 2736100 1902600 3204400 222480 3463300 2282000 2236900 2299000 2404400 2250800 2207000 2622500 1 1 1 1 1 1 1 1 1 1 1 152480000 0 152480000 20595 1048 18931 106783 129481 129481 1 VLDETARER Unmodified 1087.5622 0.56218613 1505 Q03252 LMNB2 Lamin-B2 yes yes 0 0 0 1 By MS/MS 3 0 1 1 29.628 29.365 3 0.086552 8808 20211116_3441_TMUAki_TMT10x_S_F3 46.033 24.526 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20596 1505 18932 106784 129482 129482 1 VLDFEHFLPMLQTVAK Oxidation (M) 1902.9914 0.99135615 1275 P60660;P60660-2 MYL6 Myosin light polypeptide 6 yes no 0 0 1 0 By MS/MS By MS/MS 4.77 2.94 2 4 1 2 4 6 7 64.478 64.453 3;4 2.3408E-06 26015 20211116_3436_TMUAki_TMT10x_P_F8 101.2 76.149 102900000 175070000 689260 152570000 117930000 166750000 128410000 117560000 121050000 125820000 129680000 95812000 163280000 8689800 157450000 113340000 167900000 129470000 122260000 123770000 122550000 124830000 12 12 6 12 12 12 12 12 12 12 12 44744000 78389000 77120 67120000 43492000 93494000 53114000 54805000 54669000 58271000 57301000 41660000 73103000 3490300 69664000 41931000 92750000 53421000 57778000 55641000 56767000 55194000 5 5 1 5 5 5 5 5 5 5 5 58158000 96684000 612140 85448000 74438000 73258000 75294000 62755000 66377000 67553000 72379000 54152000 90175000 5199400 87783000 71406000 75147000 76053000 64479000 68131000 65778000 69636000 7 7 5 7 7 7 7 7 7 7 7 17895000000 8901000000 8993500000 20597 1275 18933 106785;106786;106787;106788;106789;106790;106791;106792;106793;106794;106795;106796;106797 129483;129484;129485;129486;129487;129488;129489;129490;129491;129492;129493;129494 129487 1715 12 VLDFEHFLPMLQTVAK Unmodified 1886.9964 0.99644153 1275 P60660;P60660-2 MYL6 Myosin light polypeptide 6 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 2.69 2 2 2 2 5 3 80.511 80.492 3 2.5294E-15 26664 20211116_3440_TMUAki_TMT10x_S_F2 151.22 130.84 39306000 64010000 275570 69621000 46100000 41360000 46473000 17533000 14346000 21006000 39673000 36599000 59749000 3589800 70206000 44228000 43343000 46125000 19133000 16899000 20372000 37487000 8 8 5 8 8 8 8 8 8 8 8 20273000 32304000 229360 34719000 19952000 26480000 22674000 8502000 7316600 10243000 19558000 18877000 30152000 1879300 35125000 19213000 27080000 22382000 9603700 8549700 9932300 18488000 4 4 3 4 4 4 4 4 4 4 4 19033000 31706000 46206 34902000 26148000 14880000 23799000 9030900 7029800 10763000 20116000 17722000 29597000 1710500 35081000 25015000 16262000 23744000 9529100 8349700 10440000 19000000 4 4 2 4 4 4 4 4 4 4 4 12997000000 7375600000 5621700000 20598 1275 18933 106798;106799;106800;106801;106802;106803;106804;106805 129495;129496;129497;129498;129499;129500;129501;129502;129503 129502 9 VLDHAMIGPEGTDNCHK Oxidation (M) 1908.8458 0.8458309 2328 Q8WYA6;Q8WYA6-4;Q8WYA6-3;Q8WYA6-2 CTNNBL1 Beta-catenin-like protein 1 yes no 0 0 1 0 By MS/MS 4 0 1 1 35.272 35.297 4 0.00038121 8530 20211116_3431_TMUAki_TMT10x_P_F4 67.707 55.731 821010 1225100 0 1296800 1740500 1614500 1037200 795780 944700 858060 1029700 764290 1143500 61461 1322600 1649900 1606700 1086000 852280 968130 835460 990660 1 1 0 1 1 1 1 1 1 1 1 821010 1225100 0 1296800 1740500 1614500 1037200 795780 944700 858060 1029700 764290 1143500 61461 1322600 1649900 1606700 1086000 852280 968130 835460 990660 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 87994000 87994000 0 20599 2328 18934 106806 129504 129504 2674 1 VLDLAEQV Unmodified 885.48075 0.48074791 2495 Q96I25 RBM17 Splicing factor 45 yes yes 0 0 0 0 By MS/MS 2 0 1 1 74.62 74.476 2 0.10251 25558 20211116_3429_TMUAki_TMT10x_P_F2 47.743 35.838 1053400 1582900 0 1621100 1059600 1923000 1115100 988450 912580 994130 1177600 980580 1477100 61402 1655600 1015700 1919400 1122000 1052300 946660 970680 1127800 1 1 0 1 1 1 1 1 1 1 1 1053400 1582900 0 1621100 1059600 1923000 1115100 988450 912580 994130 1177600 980580 1477100 61402 1655600 1015700 1919400 1122000 1052300 946660 970680 1127800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 162240000 162240000 0 20600 2495 18935 106807 129505 129505 1 VLDLDLFR Unmodified 989.55458 0.55458155 1107 P49591 SARS Serine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 78.154 78.155 2 0.00067033 25368 20211116_3445_TMUAki_TMT10x_S_F6 136.16 83.472 25143000 40241000 7079.2 38605000 32422000 42944000 31982000 28605000 27360000 29222000 33168000 23409000 37543000 1963200 39564000 31062000 43158000 32320000 29825000 28243000 28514000 31816000 6 6 1 6 6 6 6 6 6 6 6 14633000 23150000 7079.2 22449000 17782000 30969000 18741000 16565000 15663000 17144000 18911000 13624000 21599000 1169200 23079000 17069000 30700000 18865000 17586000 16184000 16720000 18142000 4 4 1 4 4 4 4 4 4 4 4 10510000 17090000 0 16156000 14640000 11974000 13240000 12040000 11698000 12078000 14257000 9784500 15944000 794060 16485000 13993000 12458000 13456000 12239000 12059000 11794000 13674000 2 2 0 2 2 2 2 2 2 2 2 3622900000 1575500000 2047400000 20601 1107 18936 106808;106809;106810;106811;106812;106813 129506;129507;129508;129509;129510;129511;129512 129512 7 VLDLSGNALEALPPGQGLGPAEPPGLPQLQSLNLSGNR Unmodified 3789.0061 0.0061016011 2188 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 0 0 0 0 By MS/MS By MS/MS 6 2.92 1 1 2 2 2 80.743 80.752 4 0.00023333 26786 20211116_3436_TMUAki_TMT10x_P_F8 58.122 50.933 11951000 19362000 94695 18728000 10807000 13042000 15164000 9187100 9902200 10413000 13235000 11128000 18064000 1063100 19065000 10477000 13550000 14991000 9572100 10422000 10119000 12664000 4 4 4 4 4 4 4 4 4 4 4 2485700 4013500 13429 3744800 2356700 4248500 2452100 1954700 2230100 2203200 2602200 2314500 3744000 216790 3846800 2262900 4245500 2475400 2110600 2291700 2141500 2498700 2 2 2 2 2 2 2 2 2 2 2 9465500 15348000 81265 14983000 8450200 8793200 12712000 7232400 7672000 8209300 10633000 8813900 14320000 846270 15218000 8214500 9304700 12516000 7461400 8130600 7977400 10165000 2 2 2 2 2 2 2 2 2 2 2 5274700000 2801600000 2473200000 20602 2188 18937 106814;106815;106816;106817 129513;129514;129515;129516 129514 4 VLDNYLTSPLPEEVDETSAEDEGVSQRK Unmodified 3119.4782 0.47824789 80 O00299 CLIC1 Chloride intracellular channel protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 1.86 1.12 4 1 1 1 4 3 69.344 69.157 3;4 9.1277E-64 21877 20211116_3428_TMUAki_TMT10x_P_F1 219.18 206.62 28145000 47394000 267080 45155000 31414000 38584000 31178000 26451000 26845000 27516000 33877000 26207000 44216000 2443900 46125000 30120000 39439000 31503000 27538000 27749000 26830000 32462000 11 11 7 11 11 11 11 11 11 11 11 12609000 21724000 136460 20652000 13559000 22799000 14960000 12681000 13298000 12917000 14844000 11740000 20267000 1071900 21176000 13037000 22866000 15050000 13411000 13656000 12606000 14271000 5 5 3 5 5 5 5 5 5 5 5 15537000 25671000 130620 24503000 17856000 15785000 16217000 13769000 13546000 14599000 19034000 14467000 23949000 1372000 24949000 17083000 16574000 16453000 14126000 14093000 14224000 18191000 6 6 4 6 6 6 6 6 6 6 6 6166600000 2867800000 3298800000 20603 80 18938 106818;106819;106820;106821;106822;106823;106824 129517;129518;129519;129520;129521;129522;129523;129524;129525;129526;129527;129528 129519 12 VLDPFTIKPLDR Unmodified 1412.8028 0.80275075 853 P29401;P29401-2 TKT Transketolase yes no 0 0 0 1 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 67.568 67.641 3 1.3179E-07 21226 20211116_3428_TMUAki_TMT10x_P_F1 134.68 105.96 46333000 81140000 212480 59663000 72489000 110500000 64015000 89286000 79892000 85730000 75160000 43138000 75632000 3993600 63143000 69279000 108960000 65867000 91744000 80414000 83875000 72650000 5 5 2 5 5 5 5 5 5 5 5 29839000 48829000 19090 37711000 38758000 80533000 44135000 50716000 47882000 48580000 44118000 27780000 45522000 2249000 39897000 37276000 78730000 44602000 53005000 48414000 47533000 42675000 3 3 1 3 3 3 3 3 3 3 3 16494000 32310000 193390 21952000 33731000 29972000 19880000 38570000 32010000 37150000 31042000 15359000 30110000 1744600 23246000 32003000 30232000 21265000 38739000 31999000 36341000 29975000 2 2 1 2 2 2 2 2 2 2 2 5373000000 3607400000 1765600000 20604 853 18939 106825;106826;106827;106828;106829;106830 129529;129530;129531;129532;129533;129534 129529 6 VLDPFTIKPLDRK Unmodified 1540.8977 0.89771377 853 P29401;P29401-2 TKT Transketolase yes no 0 0 0 2 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 60.426 60.187 4 3.0945E-19 18451 20211116_3440_TMUAki_TMT10x_S_F2 192.14 170.69 35282000 54754000 320430 60785000 47804000 57933000 35214000 46981000 43549000 41595000 44971000 32853000 51114000 3384200 61542000 45539000 58948000 36636000 48158000 43990000 40845000 43338000 7 7 6 7 7 7 7 7 7 7 7 23424000 35074000 154280 38697000 35916000 47982000 26923000 30369000 28444000 26430000 29117000 21811000 32742000 2245900 39361000 34220000 47913000 27826000 31648000 28894000 25975000 28067000 4 4 3 4 4 4 4 4 4 4 4 11858000 19680000 166150 22088000 11888000 9950900 8291700 16612000 15106000 15165000 15855000 11042000 18372000 1138400 22182000 11319000 11036000 8809600 16511000 15096000 14870000 15271000 3 3 3 3 3 3 3 3 3 3 3 5377600000 3456600000 1921100000 20605 853 18940 106831;106832;106833;106834;106835 129535;129536;129537;129538;129539;129540;129541 129539 7 VLDSFCEGLK Unmodified 1166.5642 0.56415996 53 CON__Q3SX09 yes yes 0 0 0 0 By MS/MS 4 0 1 1 64.642 64.741 2 1.4895E-06 20454 20211116_3431_TMUAki_TMT10x_P_F4 154.56 112.45 + 5034100 8097200 4109 8424300 11797000 14694000 8153200 9599100 9161300 9986500 8072500 4686800 7556700 449660 8664800 11215000 14468000 8491900 10028000 9237300 9737300 7821000 2 2 1 2 2 2 2 2 2 2 2 5034100 8097200 4109 8424300 11797000 14694000 8153200 9599100 9161300 9986500 8072500 4686800 7556700 449660 8664800 11215000 14468000 8491900 10028000 9237300 9737300 7821000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 304040000 304040000 0 20606 53 18941 106836 129542;129543 129543 2 VLDSGAPIKIPVGPETLGR Unmodified 1918.0888 0.088762013 518 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 6.27 2.56 2 1 3 5 7 4 66.12 66.271 2;3;4 2.9571E-56 20729 20211116_3436_TMUAki_TMT10x_P_F8 249.41 216 83318000 147620000 2388100 127620000 110990000 158630000 105270000 126670000 115970000 120460000 122490000 77594000 137670000 9452500 132070000 106420000 158970000 107410000 130210000 117740000 117900000 117960000 20 20 17 20 20 20 20 20 20 20 20 48419000 84361000 2212800 75408000 65010000 117050000 67664000 73855000 67676000 71367000 72265000 45099000 78684000 6282500 78184000 62534000 115700000 68496000 77196000 69011000 69803000 69570000 12 12 11 12 12 12 12 12 12 12 12 34899000 63256000 175240 52208000 45980000 41580000 37602000 52812000 48289000 49092000 50223000 32495000 58983000 3170000 53882000 43885000 43267000 38910000 53018000 48727000 48099000 48388000 8 8 6 8 8 8 8 8 8 8 8 30948000000 18549000000 12399000000 20607 518 18942 106837;106838;106839;106840;106841;106842;106843;106844;106845;106846;106847 129544;129545;129546;129547;129548;129549;129550;129551;129552;129553;129554;129555;129556;129557;129558;129559;129560;129561;129562;129563 129554 20 VLEALLPLK Unmodified 994.64267 0.64266828 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 3.09 1 1 1 2 1 78.78 78.786 2;3 0.00026345 25766 20211116_3428_TMUAki_TMT10x_P_F1 95.815 68.853 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20608 1092 18943 106848;106849;106850 129564;129565;129566 129564 3 VLECDIIK Unmodified 988.52632 0.52631789 2707 Q9BWF3;Q9BWF3-3;Q9BWF3-4;Q9BWF3-2;Q9BQ04 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 0 0 0 0 By MS/MS 4 0 1 1 55.854 55.837 2 0.011162 17224 20211116_3442_TMUAki_TMT10x_S_F4 79.474 15.994 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20609 2707 18944 106851 129567 129567 1 VLECLASGIVMPDGSGIYDPCEK Oxidation (M) 2525.1488 0.14879737 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 1 0 By MS/MS By MS/MS 4.33 1.11 2 1 2 1 2 4 78.952 78.923 3;4 4.8837E-11 25711 20211116_3445_TMUAki_TMT10x_S_F6 104.06 83.617 16106000 27114000 275570 23460000 17228000 26436000 19405000 15953000 14339000 17420000 21701000 14998000 25287000 1603100 24235000 16590000 26512000 19412000 16793000 15070000 16953000 20706000 5 5 4 5 5 5 5 5 5 5 5 9361400 15082000 59807 13164000 8727900 18089000 10449000 9342800 8207000 9793700 12759000 8716800 14066000 818260 13639000 8415300 17928000 10440000 9954000 8608800 9546500 12167000 3 3 2 3 3 3 3 3 3 3 3 6744100 12032000 215760 10296000 8499900 8346800 8955400 6610000 6131600 7626300 8942400 6281100 11220000 784810 10597000 8174700 8584300 8972700 6838700 6461200 7406400 8539400 2 2 2 2 2 2 2 2 2 2 2 6516600000 1919800000 4596900000 20610 1576 18945 106852;106853;106854;106855;106856;106857 129568;129569;129570;129571;129572 129572 2133 5 VLECLASGIVMPDGSGIYDPCEK Unmodified 2509.1539 0.15388274 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 0 By MS/MS 7 0 1 1 80.029 80.061 3 0.0043233 27833 20211116_3435_TMUAki_TMT10x_P_F7 49.577 40.413 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20611 1576 18945 106858 129573 129573 1 VLEDEEGSKDIELSDDPYDCIR Unmodified 2596.1487 0.14865725 1756 Q15024 EXOSC7 Exosome complex component RRP42 yes yes 0 0 0 1 By MS/MS 1 0 1 1 63.884 63.884 3 1.4191E-10 19700 20211116_3428_TMUAki_TMT10x_P_F1 113.51 106.12 3037500 5146300 43333 5182700 4141600 7199800 4495800 3794100 3337500 4056700 4064500 2828600 4802200 307680 5314800 3982700 7133700 4505900 4037300 3471800 3951200 3898400 1 1 1 1 1 1 1 1 1 1 1 3037500 5146300 43333 5182700 4141600 7199800 4495800 3794100 3337500 4056700 4064500 2828600 4802200 307680 5314800 3982700 7133700 4505900 4037300 3471800 3951200 3898400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1113100000 1113100000 0 20612 1756 18946 106859 129574 129574 1 VLEDNKLPGAICSLTCGGADIGTAMAK Oxidation (M) 2777.3398 0.33978603 1098 P49419-2;P49419;P49419-4 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 0 0 1 1 By MS/MS By matching 7.33 0.471 2 1 2 1 70.928 71.161 4 0.0032093 22794 20211116_3436_TMUAki_TMT10x_P_F8 53.089 42.4 4594200 7371000 106250 7271700 5156200 9684500 5951300 4724700 4766100 5664300 6053700 4278500 6877600 487790 7461500 4970400 9605700 5958400 5082200 4946300 5493300 5799900 2 2 2 2 2 2 2 2 2 2 2 4594200 7371000 106250 7271700 5156200 9684500 5951300 4724700 4766100 5664300 6053700 4278500 6877600 487790 7461500 4970400 9605700 5958400 5082200 4946300 5493300 5799900 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2151500000 1319100000 832330000 20613 1098 18947 106860;106861;106862 129575;129576 129576 1461 2 VLEDNKLPGAICSLTCGGADIGTAMAKDER Unmodified 3161.5155 0.51551857 1098 P49419-2;P49419;P49419-4 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 0 0 0 2 By MS/MS 7 0 1 1 72.285 72.626 4 5.6545E-06 24656 20211116_3435_TMUAki_TMT10x_P_F7 65.244 57.869 4780500 8533700 87637 7653500 5083500 7599900 6449700 2853500 2580100 3612800 5331600 4451800 7959600 482250 7869200 4913900 7639000 6351000 3163500 2891800 3497100 5058000 1 1 1 1 1 1 1 1 1 1 1 4780500 8533700 87637 7653500 5083500 7599900 6449700 2853500 2580100 3612800 5331600 4451800 7959600 482250 7869200 4913900 7639000 6351000 3163500 2891800 3497100 5058000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 920050000 920050000 0 20614 1098 18948 106863 129577 129577 1 VLEDSDLKKSDIDEIVLVGGSTR Unmodified 2487.3068 0.30681287 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 2 By MS/MS By MS/MS 4.17 1.07 2 2 1 1 3 3 69.067 68.933 4 3.1448E-36 24879 20211116_3441_TMUAki_TMT10x_S_F3 188.39 170.33 28243000 53017000 322940 35690000 54843000 76249000 43466000 104250000 84869000 77997000 61467000 26299000 49406000 2755500 38240000 52316000 75805000 45966000 103790000 83698000 77257000 60019000 9 9 6 9 9 9 9 9 9 9 9 12293000 22496000 51201 15561000 17676000 43954000 22352000 42482000 34426000 32270000 24979000 11447000 20965000 1124400 16790000 17068000 42993000 22802000 42962000 34159000 31937000 24389000 4 4 3 4 4 4 4 4 4 4 4 15949000 30522000 271740 20129000 37167000 32295000 21114000 61765000 50443000 45727000 36488000 14852000 28441000 1631100 21451000 35248000 32812000 23164000 60831000 49539000 45320000 35630000 5 5 3 5 5 5 5 5 5 5 5 7148600000 3662300000 3486300000 20615 614 18949 106864;106865;106866;106867;106868;106869 129578;129579;129580;129581;129582;129583;129584;129585;129586 129582 9 VLEEANQAINPK Unmodified 1324.6987 0.69867961 2368 Q92841;Q92841-3;Q92841-1;Q92841-2 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 51.991 51.968 3 4.163E-09 15630 20211116_3442_TMUAki_TMT10x_S_F4 146.16 108.14 5192200 8781100 67972 8817600 6678000 6212700 5662400 7954100 7551300 6296800 7985800 4834900 8193800 507680 8953900 6381300 6528900 5855200 7949700 7614900 6218000 7690200 3 3 2 3 3 3 3 3 3 3 3 1390800 2279700 11632 2217500 2507700 2972000 1901100 2008400 2054900 1688900 2010000 1295000 2127000 141790 2277800 2390000 2959500 1964900 2081100 2082200 1662600 1940300 1 1 1 1 1 1 1 1 1 1 1 3801500 6501400 56340 6600200 4170300 3240800 3761300 5945700 5496400 4607900 5975900 3539900 6066800 365890 6676100 3991300 3569500 3890300 5868600 5532700 4555400 5749900 2 2 1 2 2 2 2 2 2 2 2 761590000 174010000 587580000 20616 2368 18950 106870;106871;106872 129587;129588;129589;129590 129590 4 VLEEGSVEAR Unmodified 1087.551 0.55095274 2427 Q96CT7 CCDC124 Coiled-coil domain-containing protein 124 yes yes 0 0 0 0 By MS/MS By MS/MS 1.4 0.49 3 2 3 2 35.597 35.614 2 4.4678E-07 8526 20211116_3428_TMUAki_TMT10x_P_F1 111.61 62.165 657730 1082300 7226.8 1202500 661240 565190 690990 503150 606760 532340 779080 612460 1010300 61029 1208700 635200 613700 696740 515570 627080 518710 746220 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 657730 1082300 7226.8 1202500 661240 565190 690990 503150 606760 532340 779080 612460 1010300 61029 1208700 635200 613700 696740 515570 627080 518710 746220 2 2 1 2 2 2 2 2 2 2 2 52216000 0 52216000 20617 2427 18951 106873;106874;106875;106876;106877 129591;129592;129593;129594;129595 129592 5 VLEEVCASPQGPGALFVQSHLEDLKK Unmodified 2850.4586 0.45857926 1920 Q5JTH9;Q5JTH9-2;Q5JTH9-3 RRP12 RRP12-like protein yes no 0 0 0 1 By MS/MS By MS/MS 6.67 0.943 2 1 2 1 74.268 74.234 4 8.9401E-09 23990 20211116_3436_TMUAki_TMT10x_P_F8 96.303 84.681 11208000 18189000 215210 17493000 12910000 22206000 13856000 14443000 10790000 13307000 15848000 10437000 16970000 1134100 17965000 12414000 22157000 13911000 15042000 11291000 13043000 15132000 3 3 2 3 3 3 3 3 3 3 3 8602200 13622000 215210 13492000 9463100 18639000 10808000 11075000 8350000 10238000 11966000 8011100 12710000 925810 13850000 9120500 18500000 10817000 11617000 8730600 10033000 11431000 2 2 2 2 2 2 2 2 2 2 2 2605700 4566800 0 4000800 3447100 3567800 3048000 3367600 2440500 3069400 3882300 2426000 4259200 208320 4115000 3293900 3656900 3093800 3425100 2560500 3010000 3700500 1 1 0 1 1 1 1 1 1 1 1 1480700000 867300000 613430000 20618 1920 18952 106878;106879;106880 129596;129597;129598 129597 3 VLEGHTDFINGLVFDPK Unmodified 1899.9731 0.97306355 2252 Q8NFH4 NUP37 Nucleoporin Nup37 yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 75.126 75.094 3 9.9112E-07 24152 20211116_3445_TMUAki_TMT10x_S_F6 101.42 88.794 10694000 17015000 234810 16082000 13253000 15447000 12489000 13122000 12455000 13314000 13759000 9958100 15873000 1032800 16463000 12696000 15723000 12707000 13464000 12718000 12995000 13232000 3 3 2 3 3 3 3 3 3 3 3 3333100 5112200 132150 5330000 3259300 6939400 3899500 4485300 4433600 4545800 4775900 3104400 4771000 398460 5446100 3149300 6915000 3938500 4686000 4499200 4437200 4596600 1 1 1 1 1 1 1 1 1 1 1 7360900 11902000 102660 10752000 9994000 8507200 8589600 8636400 8021300 8768000 8982800 6853700 11102000 634330 11017000 9546500 8808000 8768600 8778300 8219300 8557800 8635600 2 2 1 2 2 2 2 2 2 2 2 2208900000 657540000 1551400000 20619 2252 18953 106881;106882;106883 129599;129600;129601 129601 3 VLEGMEVVR Oxidation (M) 1046.543 0.54303059 779 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 1 0 By MS/MS By MS/MS 2.93 1.1 2 2 6 3 1 8 6 36.105 36.101 2 0.0012278 12469 20211116_3441_TMUAki_TMT10x_S_F3 110.22 64.197 13830000 21165000 116750 23756000 23596000 22863000 15728000 15190000 15883000 13620000 18627000 12878000 19759000 1351100 24038000 22431000 23174000 16369000 15784000 16249000 13367000 17884000 18 18 12 18 18 18 18 18 18 18 18 9313000 13701000 64828 15466000 18695000 18624000 10951000 10213000 10422000 8987600 12031000 8671600 12791000 933730 15701000 17733000 18589000 11497000 10772000 10683000 8828200 11556000 12 12 8 12 12 12 12 12 12 12 12 4516900 7464100 51924 8289200 4900500 4239500 4776600 4976500 5460500 4632600 6596200 4205900 6967900 417390 8337500 4698100 4585300 4872800 5012300 5565500 4538600 6327900 6 6 4 6 6 6 6 6 6 6 6 1399600000 702970000 696610000 20620 779 18954 106884;106885;106886;106887;106888;106889;106890;106891;106892;106893;106894;106895;106896;106897 129602;129603;129604;129605;129606;129607;129608;129609;129610;129611;129612;129613;129614;129615;129616;129617;129618;129619 129617 919 18 VLEGMEVVR Unmodified 1030.5481 0.54811597 779 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 1.12 2 2 2 2 4 4 52.649 52.63 2 3.0695E-05 16694 20211116_3429_TMUAki_TMT10x_P_F2 108.81 67.233 30951000 49170000 175200 56863000 43809000 34697000 32541000 21218000 18043000 19739000 34703000 28819000 45910000 2882400 57135000 41732000 36411000 33148000 22209000 19581000 19339000 32961000 5 5 3 5 5 5 5 5 5 5 5 14402000 22279000 147020 25695000 26411000 23657000 17614000 9729600 8137900 8713300 15127000 13411000 20801000 1499200 25941000 25112000 23913000 18033000 10565000 8941600 8551800 14376000 2 2 2 2 2 2 2 2 2 2 2 16549000 26891000 28186 31168000 17398000 11039000 14927000 11489000 9905200 11026000 19576000 15409000 25108000 1383100 31194000 16620000 12498000 15115000 11644000 10640000 10787000 18585000 3 3 1 3 3 3 3 3 3 3 3 3951200000 1706600000 2244600000 20621 779 18954 106898;106899;106900;106901;106902;106903;106904;106905 129620;129621;129622;129623;129624;129625;129626;129627 129620 8 VLEGSELELAK Unmodified 1186.6445 0.64451877 1741 Q14980;Q14980-2;Q14980-4;Q14980-3;Q14980-5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By MS/MS 3 1 1 1 2 60.645 60.769 2 3.216E-14 18812 20211116_3431_TMUAki_TMT10x_P_F4 182.16 128 8174100 12709000 25070 13612000 13605000 17426000 10258000 9944000 9039200 9395300 10398000 7610300 11862000 670290 13880000 12955000 17349000 10542000 10472000 9297400 9198500 9988100 3 3 1 3 3 3 3 3 3 3 3 8174100 12709000 25070 13612000 13605000 17426000 10258000 9944000 9039200 9395300 10398000 7610300 11862000 670290 13880000 12955000 17349000 10542000 10472000 9297400 9198500 9988100 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 466260000 466260000 0 20622 1741 18955 106906;106907 129628;129629;129630;129631 129631 4 VLELDPALAPVVSR Unmodified 1477.8504 0.85042922 66 O00170 AIP AH receptor-interacting protein yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 74.871 74.848 2 2.6321E-25 24804 20211116_3433_TMUAki_TMT10x_P_F5 199.21 147.49 14396000 22022000 31376 22082000 14787000 22603000 16082000 13744000 12504000 12600000 17311000 13404000 20549000 1186200 22531000 14210000 22795000 16134000 14387000 13048000 12353000 16550000 4 4 1 4 4 4 4 4 4 4 4 10695000 16417000 0 16710000 10365000 18631000 12140000 10162000 9366200 9507100 13340000 9958200 15320000 840120 17055000 9980400 18671000 12136000 10740000 9790900 9312100 12746000 3 3 0 3 3 3 3 3 3 3 3 3700400 5605100 31376 5372500 4421600 3972000 3941400 3581700 3137700 3092800 3970400 3445700 5229200 346130 5476300 4229400 4124100 3998200 3646700 3256800 3040800 3804300 1 1 1 1 1 1 1 1 1 1 1 2167900000 1307300000 860660000 20623 66 18956 106908;106909;106910 129632;129633;129634;129635 129632 4 VLELEGEKGEWGFK Unmodified 1619.8195 0.81952302 1300 P61201;P61201-2 COPS2 COP9 signalosome complex subunit 2 yes no 0 0 0 1 By MS/MS 5 0 1 1 67.782 67.883 3 0.078163 21962 20211116_3433_TMUAki_TMT10x_P_F5 40.315 27.278 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20624 1300 18957 106911 129636 129636 1 VLELEPNNFEATNELRK Unmodified 2015.0324 0.032369346 2818 Q9H6T3;Q9H6T3-3;Q9H6T3-2 RPAP3 RNA polymerase II-associated protein 3 yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 61.472 61.597 3 9.4654E-36 19151 20211116_3431_TMUAki_TMT10x_P_F4 204.13 179.94 12703000 21425000 404110 22591000 17366000 22506000 16265000 13027000 12747000 13323000 15981000 11831000 19996000 1495100 22963000 16648000 22720000 16447000 13732000 13236000 13000000 15316000 4 4 4 4 4 4 4 4 4 4 4 9752000 16087000 270140 17376000 14340000 19704000 13738000 10037000 9639400 9858200 12284000 9082100 15015000 1124500 17670000 13751000 19712000 13840000 10687000 10080000 9635400 11768000 3 3 3 3 3 3 3 3 3 3 3 2951300 5338300 133970 5215000 3025500 2802100 2526800 2989900 3107400 3464600 3696900 2748900 4980800 370580 5292800 2896600 3007600 2607000 3044700 3156700 3364100 3548100 1 1 1 1 1 1 1 1 1 1 1 1693700000 1170300000 523350000 20625 2818 18958 106912;106913;106914 129637;129638;129639;129640 129637 4 VLELNASDER Unmodified 1144.5724 0.57241646 928 P35249;P35249-2 RFC4 Replication factor C subunit 4 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 43.759 43.789 2 3.1614E-09 14625 20211116_3441_TMUAki_TMT10x_S_F3 157.75 106.63 4398500 7392000 66335 8419400 5053200 4921800 4304200 5592600 5886000 5046500 6027700 4095900 6901300 435660 8464300 4830400 5244800 4454100 5636000 5923800 4951200 5810300 4 4 4 4 4 4 4 4 4 4 4 919300 1347600 20539 1693800 1999300 1874200 1099900 1004800 1138300 1036700 1169800 856120 1258700 110480 1706200 1895700 1878600 1163900 1066500 1157500 1011200 1127500 1 1 1 1 1 1 1 1 1 1 1 3479200 6044400 45796 6725500 3053800 3047600 3204300 4587800 4747600 4009800 4857900 3239800 5642600 325170 6758000 2934700 3366200 3290200 4569500 4766300 3940000 4682800 3 3 3 3 3 3 3 3 3 3 3 137820000 68819000 69001000 20626 928 18959 106915;106916;106917;106918 129641;129642;129643;129644;129645;129646 129646 6 VLELVSITANK Unmodified 1185.6969 0.69688869 915 P34897;P34897-3;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.14 3 4 1 1 4 4 7 7 74.373 74.374 2;3 5.4637E-30 23541 20211116_3447_TMUAki_TMT10x_S_F8 270.06 218.28 77246000 116200000 385270 121810000 94343000 111650000 86256000 78466000 80202000 78570000 91820000 71922000 108450000 6379200 123710000 90240000 113620000 87729000 81457000 82269000 76731000 88216000 11 11 6 11 11 11 11 11 11 11 11 37454000 54744000 238790 57323000 45368000 69135000 40967000 38215000 39227000 38867000 43017000 34873000 51092000 3213000 58473000 43390000 69007000 41731000 40434000 40117000 37933000 41380000 5 5 3 5 5 5 5 5 5 5 5 39793000 61461000 146470 64483000 48975000 42512000 45289000 40251000 40975000 39703000 48803000 37049000 57361000 3166200 65241000 46850000 44613000 45998000 41022000 42152000 38798000 46836000 6 6 3 6 6 6 6 6 6 6 6 15516000000 8750300000 6765700000 20627 915 18960 106919;106920;106921;106922;106923;106924;106925;106926;106927;106928;106929;106930;106931;106932 129647;129648;129649;129650;129651;129652;129653;129654;129655;129656;129657;129658;129659 129659 13 VLENAEGAR Unmodified 957.48796 0.48795855 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 32.591 32.482 2 1.5421E-07 6971 20211116_3428_TMUAki_TMT10x_P_F1 205.91 139.46 4349800 7318000 7231.7 6060700 5492700 6141200 5155200 3310900 3731900 3667800 5210400 4050000 6823800 358700 6272900 5257000 6187600 5202700 3519800 3911300 3567400 4980500 4 4 2 4 4 4 4 4 4 4 4 2691700 4340500 5752.2 3614400 3484800 4611200 3114200 1942700 2213500 2150200 3148200 2506200 4047400 221030 3753500 3331200 4576100 3150400 2116100 2324500 2091400 3008000 2 2 1 2 2 2 2 2 2 2 2 1658100 2977500 1479.4 2446300 2007900 1530000 2041000 1368100 1518300 1517600 2062200 1543800 2776400 137670 2519400 1925800 1611500 2052400 1403700 1586800 1476000 1972500 2 2 1 2 2 2 2 2 2 2 2 227630000 167970000 59657000 20628 972 18961 106933;106934;106935;106936 129660;129661;129662;129663 129660 4 VLEQLEDLDSR Unmodified 1315.662 0.66195975 811 P26358;P26358-2;P26358-3 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 67.916 67.71 2 1.9661E-11 23264 20211116_3439_TMUAki_TMT10x_S_F1 175.54 126.11 4081800 6841100 62266 6768800 4207000 3922900 4115500 3995900 4300800 4450600 5072200 3801000 6383200 398190 6867900 4035400 4173500 4185000 4072600 4394600 4327900 4869100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4081800 6841100 62266 6768800 4207000 3922900 4115500 3995900 4300800 4450600 5072200 3801000 6383200 398190 6867900 4035400 4173500 4185000 4072600 4394600 4327900 4869100 1 1 1 1 1 1 1 1 1 1 1 447980000 0 447980000 20629 811 18962 106937;106938 129664;129665 129665 2 VLEQLTGQTPVFSK Unmodified 1545.8403 0.84025847 1383 P62913;P62913-2 RPL11 60S ribosomal protein L11 yes no 0 0 0 0 By MS/MS By MS/MS 6.1 2.64 4 3 4 9 8 12 74.282 74.303 2;3 6.4381E-43 23092 20211116_3428_TMUAki_TMT10x_P_F1 258.65 216.95 226000000 391340000 3033800 382280000 283450000 403440000 262680000 290390000 267280000 274080000 300870000 210430000 365130000 18518000 390940000 271310000 407150000 267670000 300460000 272900000 268360000 289200000 27 27 10 27 27 27 27 27 27 27 27 141430000 242950000 1892200 239410000 195140000 326050000 187010000 185940000 169520000 175850000 191780000 131680000 226690000 12536000 245780000 186910000 323670000 189580000 195820000 174020000 172160000 184320000 12 12 2 12 12 12 12 12 12 12 12 84572000 148390000 1141500 142870000 88312000 77389000 75664000 104450000 97751000 98238000 109090000 78750000 138440000 5982100 145170000 84402000 83486000 78094000 104640000 98881000 96200000 104890000 15 15 8 15 15 15 15 15 15 15 15 55777000000 33177000000 22600000000 20630 1383 18963 106939;106940;106941;106942;106943;106944;106945;106946;106947;106948;106949;106950;106951;106952;106953;106954;106955;106956;106957;106958 129666;129667;129668;129669;129670;129671;129672;129673;129674;129675;129676;129677;129678;129679;129680;129681;129682;129683;129684;129685;129686;129687;129688;129689;129690;129691;129692;129693 129666 28 VLESTMVCVDNSEYMR 2 Oxidation (M) 1963.8325 0.83254861 1232 P55036;P55036-2 PSMD4 26S proteasome non-ATPase regulatory subunit 4 yes no 0 0 2 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 49.047 49.135 3 0.0067347 15685 20211116_3430_TMUAki_TMT10x_P_F3 56.339 48.535 6641500 10849000 64337 12289000 10441000 11920000 7934400 8095200 7670400 7799500 8848400 6184400 10129000 663810 12429000 9952400 12080000 8171100 8414800 7856700 7629600 8499300 4 4 4 4 4 4 4 4 4 4 4 4361900 6969900 51086 8075400 8244400 9800300 5757900 5673200 5450000 5216300 5658400 4061800 6507800 463620 8185900 7845700 9784800 5960900 5962800 5565300 5113300 5452000 3 3 3 3 3 3 3 3 3 3 3 2279600 3879500 13251 4213400 2196900 2119700 2176500 2421900 2220500 2583200 3190000 2122600 3621300 200190 4243400 2106700 2295300 2210200 2452000 2291400 2516200 3047200 1 1 1 1 1 1 1 1 1 1 1 1052500000 761130000 291360000 20631 1232 18964 106959;106960;106961 129694;129695;129696;129697 129695 1657;1658 4 VLEVPPVVYSR Unmodified 1256.7129 0.71287311 64 O00154-4;O00154;O00154-6;O00154-7;O00154-5;O00154-2;O00154-3 ACOT7 Cytosolic acyl coenzyme A thioester hydrolase yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 62.738 63.03 2 1.1121E-08 18744 20211116_3434_TMUAki_TMT10x_P_F6 157.49 98.571 42958000 71772000 1016800 76152000 53410000 68022000 49658000 52538000 53622000 51711000 57693000 40005000 66988000 4572800 77256000 51174000 69450000 50689000 54174000 54522000 50538000 55529000 6 6 5 6 6 6 6 6 6 6 6 22945000 36730000 522690 38479000 30833000 47738000 28491000 27689000 27124000 26994000 29483000 21368000 34279000 2499900 39270000 29537000 47611000 28979000 29143000 27737000 26392000 28368000 3 3 3 3 3 3 3 3 3 3 3 20013000 35043000 494160 37673000 22577000 20284000 21168000 24849000 26498000 24718000 28211000 18637000 32709000 2073000 37986000 21637000 21839000 21710000 25030000 26785000 24146000 27161000 3 3 2 3 3 3 3 3 3 3 3 5671400000 2953400000 2718100000 20632 64 18965 106962;106963;106964;106965 129698;129699;129700;129701;129702;129703 129699 6 VLFASQEIPASPFR Unmodified 1560.83 0.83002813 328 O75369;O75369-8;O75369-6;O75369-3;O75369-2;O75369-9;O75369-5;O75369-4;O75369-7 FLNB Filamin-B yes no 0 0 0 0 By MS/MS By MS/MS 2 0 4 2 2 74.244 74.125 2;3 1.3623E-13 24132 20211116_3440_TMUAki_TMT10x_S_F2 147.26 107.95 2665300 4624700 53341 4017000 3729400 4066900 3377600 3105100 2874100 3018400 3705500 2482100 4313000 285590 4141700 3570300 4118400 3428800 3203000 2975400 2951500 3548800 2 2 2 2 2 2 2 2 2 2 2 686970 1032300 35264 986560 688820 1331400 850750 785420 793860 802440 988700 639900 963090 89845 1014800 666680 1322800 852720 826630 817020 783000 947740 1 1 1 1 1 1 1 1 1 1 1 1978300 3592300 18077 3030400 3040600 2735600 2526800 2319600 2080200 2216000 2716800 1842200 3349900 195740 3126800 2903700 2795700 2576100 2376300 2158400 2168500 2601100 1 1 1 1 1 1 1 1 1 1 1 581160000 439760000 141400000 20633 328 18966 106966;106967;106968;106969 129704;129705;129706 129705 3 VLFDPFELDTSVTPGR Unmodified 1791.9043 0.90431529 1781 Q15269 PWP2 Periodic tryptophan protein 2 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 3 2 1 80.193 80.187 2;3 2.9783E-45 25817 20211116_3434_TMUAki_TMT10x_P_F6 213.99 171.25 2541200 4621400 37030 4672800 3263900 4011700 3384600 2837200 2705000 2906500 3174700 2366100 4312500 216130 4753500 3132300 4101300 3405800 2946000 2798300 2835800 3048000 2 2 1 2 2 2 2 2 2 2 2 1485700 2463000 0 2209200 1509500 2752300 1796600 1496000 1413000 1543900 1725100 1383100 2297300 84330 2279800 1452100 2742100 1795500 1585900 1465300 1505900 1654400 1 1 0 1 1 1 1 1 1 1 1 1055400 2158400 37030 2463700 1754400 1259400 1588000 1341200 1292000 1362600 1449600 982990 2015100 131800 2473800 1680200 1359100 1610400 1360100 1333000 1329900 1393500 1 1 1 1 1 1 1 1 1 1 1 839310000 325460000 513850000 20634 1781 18967 106970;106971;106972 129707;129708;129709 129708 3 VLFEQAFGFHGK Unmodified 1378.7034 0.70337105 2169 Q8IZ40 RCOR2 REST corepressor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 66.545 66.355 3 3.2622E-09 21007 20211116_3440_TMUAki_TMT10x_S_F2 149.26 125.88 28083000 45966000 242690 49500000 26865000 31557000 26782000 17029000 15270000 16385000 28685000 26150000 42904000 2511700 49980000 25771000 32928000 26814000 18028000 16514000 16029000 27256000 4 4 3 4 4 4 4 4 4 4 4 16626000 27159000 169730 28259000 14799000 22617000 14206000 10104000 9372200 8931700 16785000 15481000 25346000 1511000 28667000 14185000 23108000 14291000 10870000 10009000 8771500 15962000 2 2 2 2 2 2 2 2 2 2 2 11458000 18807000 72965 21241000 12066000 8939300 12576000 6925000 5897800 7453400 11900000 10669000 17558000 1000700 21313000 11585000 9820300 12523000 7158300 6505100 7257700 11293000 2 2 1 2 2 2 2 2 2 2 2 3477300000 2054200000 1423100000 20635 2169 18968 106973;106974;106975;106976 129710;129711;129712;129713 129713 4 VLFICTANVTDTIPEPLRDR Unmodified 2329.21 0.21001614 955 P36776;P36776-3;P36776-2 LONP1 Lon protease homolog, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 76.599 76.613 3 2.1106E-09 25027 20211116_3436_TMUAki_TMT10x_P_F8 117.26 106.44 15622000 25088000 72819 23129000 16645000 25780000 19172000 14430000 12146000 14923000 17719000 14545000 23402000 1256000 23773000 16020000 25844000 19097000 15259000 12862000 14554000 16921000 4 4 3 4 4 4 4 4 4 4 4 11638000 19001000 60996 17549000 11292000 21185000 14126000 11312000 9026700 11422000 13419000 10836000 17724000 895520 18059000 10895000 21136000 14022000 12003000 9562100 11151000 12809000 3 3 2 3 3 3 3 3 3 3 3 3983600 6086900 11824 5580500 5352700 4594800 5046300 3117800 3119700 3500800 4300500 3709200 5677900 360470 5714000 5125500 4708500 5075000 3255900 3300000 3403300 4112000 1 1 1 1 1 1 1 1 1 1 1 4483500000 2922300000 1561300000 20636 955 18969 106977;106978;106979 129714;129715;129716;129717 129716 4 VLFLIPK Unmodified 828.54731 0.54731133 3348 Q9Y6E0;Q9Y6E0-2;Q9P289;Q9P289-2;O00506;O00506-3;O00506-2 STK24;STK26;STK25 Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit;Serine/threonine-protein kinase 26;Serine/threonine-protein kinase 25 yes no 0 0 0 0 By matching By MS/MS 5.33 0.471 2 1 1 2 77.035 77.031 2 0.0025901 24921 20211116_3445_TMUAki_TMT10x_S_F6 124.12 107.2 15616000 25939000 154700 24308000 21238000 16408000 17697000 15286000 14820000 15825000 18543000 14541000 24198000 1512100 24795000 20284000 17177000 18047000 15614000 15335000 15434000 17772000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15616000 25939000 154700 24308000 21238000 16408000 17697000 15286000 14820000 15825000 18543000 14541000 24198000 1512100 24795000 20284000 17177000 18047000 15614000 15335000 15434000 17772000 2 2 1 2 2 2 2 2 2 2 2 795440000 456010000 339430000 20637 3348 18970 106980;106981;106982 129718;129719;129720 129719 3 VLFLLGADGGCITR Unmodified 1490.7915 0.79153413 842 P28331;P28331-3;P28331-4;P28331-5;P28331-2 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 0 0 0 0 By matching By MS/MS 3 0 2 1 1 78.532 78.454 2 1.9035E-09 28624 20211116_3441_TMUAki_TMT10x_S_F3 136.86 97.842 8263800 13969000 26876 13538000 10410000 9054300 9913300 5315100 4962200 5557300 9426200 7694600 13033000 740230 13774000 9970400 9416400 9928200 5600000 5423300 5417600 8954900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8263800 13969000 26876 13538000 10410000 9054300 9913300 5315100 4962200 5557300 9426200 7694600 13033000 740230 13774000 9970400 9416400 9928200 5600000 5423300 5417600 8954900 1 1 1 1 1 1 1 1 1 1 1 2057900000 779860000 1278000000 20638 842 18971 106983;106984 129721 129721 1 VLFPGNSTQYNILEGLEK Unmodified 2021.047 0.046956778 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.73 1.91 1 1 5 4 6 5 79.221 79.233 2;3 5.4884E-50 25482 20211116_3447_TMUAki_TMT10x_S_F8 224.43 161.11 76156000 115770000 121290 115750000 62529000 106070000 84090000 54219000 69069000 71465000 78062000 70906000 108030000 4543600 117950000 60475000 107490000 83704000 58259000 71243000 69085000 75025000 13 13 1 13 13 13 13 13 13 13 13 44604000 65772000 121290 64899000 37425000 68192000 42549000 32237000 41746000 40116000 43541000 41530000 61369000 2227500 66319000 36005000 68458000 42867000 34827000 42568000 38854000 41947000 7 7 1 7 7 7 7 7 7 7 7 31551000 49999000 0 50856000 25104000 37874000 41541000 21982000 27324000 31349000 34521000 29376000 46657000 2316000 51627000 24471000 39027000 40837000 23432000 28675000 30231000 33078000 6 6 0 6 6 6 6 6 6 6 6 23976000000 10121000000 13855000000 20639 1057 18972 106985;106986;106987;106988;106989;106990;106991;106992;106993;106994;106995 129722;129723;129724;129725;129726;129727;129728;129729;129730;129731;129732;129733;129734;129735;129736 129735 15 VLFRPSDTANSSNQDALSSNTSLK Unmodified 2551.2514 0.25142326 2195 Q8N4V1;Q8N4V1-2 MMGT1 Membrane magnesium transporter 1 yes no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 52.818 53.123 3 1.7346E-48 14923 20211116_3447_TMUAki_TMT10x_S_F8 213.72 187.58 3807400 7035500 51337 7566900 4523200 5468700 3367700 5876200 6375700 5290800 5644700 3545400 6566900 369180 7650600 4310800 5709700 3569500 5936400 6328600 5191400 5467800 3 3 2 3 3 3 3 3 3 3 3 1338800 2121800 23586 2452200 2382900 3182800 1897100 1984100 1937800 1646300 1657600 1246700 1981100 147600 2489300 2274000 3170400 1951000 2067700 1959600 1621700 1607700 1 1 1 1 1 1 1 1 1 1 1 2468600 4913700 27751 5114700 2140300 2285900 1470600 3892100 4437900 3644500 3987100 2298600 4585800 221580 5161300 2036800 2539300 1618500 3868700 4369000 3569600 3860100 2 2 1 2 2 2 2 2 2 2 2 716620000 433540000 283080000 20640 2195 18973 106996;106997 129737;129738;129739 129739 3 VLFSSNGGVVK Unmodified 1105.6132 0.61315906 818 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.8 2.64 2 2 1 3 2 55.282 55.093 2 1.4035E-47 17630 20211116_3429_TMUAki_TMT10x_P_F2 302.3 233.52 18067000 27739000 1475.5 29186000 37294000 37399000 21071000 26976000 31337000 23117000 26208000 16821000 25889000 1515300 29795000 35335000 37359000 22539000 27837000 31249000 22737000 25441000 5 5 2 5 5 5 5 5 5 5 5 11832000 17911000 1376 19253000 32036000 32580000 16286000 18063000 20613000 15270000 17200000 11016000 16718000 1090200 19746000 30311000 32042000 17477000 19014000 20660000 15028000 16698000 3 3 1 3 3 3 3 3 3 3 3 6235300 9827200 99.411 9933500 5257300 4819200 4785000 8912700 10724000 7847500 9008400 5805000 9170300 425090 10050000 5024000 5317000 5062200 8823300 10589000 7708200 8743200 2 2 1 2 2 2 2 2 2 2 2 2774400000 1730300000 1044200000 20641 818 18974 106998;106999;107000;107001;107002 129740;129741;129742;129743;129744;129745 129741 6 VLGATLLPDLIQK Unmodified 1379.8388 0.8388019 1246 P55786;P55786-2 NPEPPS Puromycin-sensitive aminopeptidase yes no 0 0 0 0 By MS/MS By MS/MS 2.8 2.64 2 2 1 3 2 79.281 79.262 2;3 5.3381E-25 25978 20211116_3428_TMUAki_TMT10x_P_F1 202.56 152.75 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20642 1246 18975 107003;107004;107005;107006;107007 129746;129747;129748;129749;129750 129746 5 VLGDLIFNQPDRR Unmodified 1541.8314 0.83142511 2307 Q8WVC6;Q8WVC6-2 DCAKD Dephospho-CoA kinase domain-containing protein yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 61.333 61.582 3 1.9345E-23 18283 20211116_3447_TMUAki_TMT10x_S_F8 216.34 173.56 4645200 7759800 48346 7382500 5721000 5227500 5578000 6252700 5558900 5711500 6530400 4325300 7239300 410100 7525800 5482600 5481400 5664900 6289400 5690500 5600400 6269600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4645200 7759800 48346 7382500 5721000 5227500 5578000 6252700 5558900 5711500 6530400 4325300 7239300 410100 7525800 5482600 5481400 5664900 6289400 5690500 5600400 6269600 2 2 1 2 2 2 2 2 2 2 2 822390000 0 822390000 20643 2307 18976 107008;107009;107010 129751;129752;129753 129752 3 VLGENYTLEDEEDSQICTVGR Unmodified 2426.0907 0.09074844 1757 Q15029;Q15029-2;Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 2 4 63.437 63.239 3 8.3077E-56 21456 20211116_3439_TMUAki_TMT10x_S_F1 233.31 223.35 10698000 17839000 34794 16351000 12659000 19062000 12872000 14321000 13147000 13806000 14857000 9959700 16640000 742720 16827000 12132000 19145000 13054000 14784000 13423000 13505000 14279000 7 7 1 7 7 7 7 7 7 7 7 5934900 9654100 34794 8896900 7418300 13957000 8266100 7722300 7251400 7886700 8406100 5525300 9005500 424310 9205400 7128600 13766000 8308900 8171100 7462500 7695800 8073300 4 4 1 4 4 4 4 4 4 4 4 4763300 8184900 0 7454500 5240500 5104800 4605700 6598700 5895400 5919700 6451200 4434400 7634700 318420 7621200 5003500 5379000 4744900 6613400 5960800 5809400 6206000 3 3 0 3 3 3 3 3 3 3 3 4422600000 2227400000 2195200000 20644 1757 18977 107011;107012;107013;107014;107015;107016 129754;129755;129756;129757;129758;129759;129760;129761;129762 129758 9 VLGETANILETGETLEPAGAHLVLEEK Unmodified 2832.4757 0.47566911 1501 Q02952;Q02952-3;Q02952-2 AKAP12 A-kinase anchor protein 12 yes no 0 0 0 0 By MS/MS By MS/MS 1.8 0.4 1 4 3 2 78.196 78.163 3;4 4.9047E-18 25561 20211116_3428_TMUAki_TMT10x_P_F1 135.01 121.96 10839000 16837000 45680 14406000 10105000 18680000 11858000 11659000 10824000 11990000 12840000 10092000 15701000 814410 14932000 9728600 18609000 11904000 12218000 11129000 11697000 12324000 4 4 2 4 4 4 4 4 4 4 4 8970300 13725000 24930 11467000 7712800 16534000 9350300 9810200 9005700 10036000 10559000 8351400 12799000 632810 11934000 7430500 16380000 9388100 10320000 9231900 9792000 10138000 3 3 1 3 3 3 3 3 3 3 3 1868700 3111400 20750 2938800 2392400 2146500 2507700 1848400 1818600 1954600 2280400 1740100 2902600 181600 2998400 2298100 2228900 2516300 1897500 1896700 1904600 2185600 1 1 1 1 1 1 1 1 1 1 1 4774500000 3254200000 1520300000 20645 1501 18978 107017;107018;107019;107020;107021 129763;129764;129765;129766 129763 4 VLGGINR Unmodified 727.43407 0.43407249 2037 Q6ZWJ1 STXBP4 Syntaxin-binding protein 4 yes yes 0 0 0 0 By MS/MS 8 0 1 1 34.199 34.775 2 0.10137 7267 20211116_3447_TMUAki_TMT10x_S_F8 58.551 13.101 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20646 2037 18979 107022 129767 129767 1 VLGGNQTLTVNVEGTK Unmodified 1628.8733 0.87334951 2075 Q7Z3B4;Q7Z3B4-2;Q7Z3B4-3 NUP54 Nucleoporin p54 yes no 0 0 0 0 By MS/MS 6 0 1 1 56.839 56.903 3 0.060623 16652 20211116_3445_TMUAki_TMT10x_S_F6 38.546 20.629 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20647 2075 18980 107023 129768 129768 1 VLGILAMIDEGETDWK Oxidation (M) 1804.8917 0.89170169 1777 Q15181 PPA1 Inorganic pyrophosphatase yes yes 0 0 1 0 By MS/MS 3 0 1 1 80.879 80.817 3 0.0018643 28565 20211116_3430_TMUAki_TMT10x_P_F3 65.374 53.398 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20648 1777 18981 107024 129769 129769 2380 1 VLGIQVDTDGSGR Unmodified 1315.6732 0.67319314 912 P33992 MCM5 DNA replication licensing factor MCM5 yes yes 0 0 0 0 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 51.944 51.903 2 3.4018E-23 15593 20211116_3442_TMUAki_TMT10x_S_F4 216.35 185.09 10934000 17743000 36295 19012000 16438000 18732000 12469000 13305000 14675000 12334000 14465000 10181000 16561000 1000400 19302000 15663000 18978000 12924000 13773000 14825000 12086000 13961000 4 4 2 4 4 4 4 4 4 4 4 7085000 11201000 33756 12298000 12597000 14603000 8632700 8315900 9155600 7565800 9147500 6597100 10456000 695150 12503000 11981000 14593000 8980000 8749900 9291100 7420100 8824500 2 2 1 2 2 2 2 2 2 2 2 3848800 6542300 2539 6714000 3841100 4128800 3836300 4989300 5519400 4768200 5317700 3583500 6105300 305210 6798600 3682000 4384900 3943700 5022700 5534200 4666000 5136000 2 2 1 2 2 2 2 2 2 2 2 1467200000 700890000 766300000 20649 912 18982 107025;107026;107027;107028;107029 129770;129771;129772;129773;129774;129775 129774 6 VLGLVLLR Unmodified 881.60622 0.60622319 674 P14678;P63162;P14678-2;P14678-3;P63162-2 SNRPB;SNRPN Small nuclear ribonucleoprotein-associated proteins B and B';Small nuclear ribonucleoprotein-associated protein N yes no 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 75.707 75.691 2 0.00054254 25089 20211116_3433_TMUAki_TMT10x_P_F5 138.53 138.53 18276000 33404000 0 22823000 24845000 38414000 26726000 33161000 31546000 30552000 26480000 17015000 31129000 1412600 24263000 23857000 38054000 27160000 33903000 31702000 29946000 25701000 7 7 0 7 7 7 7 7 7 7 7 8015000 14263000 0 9343300 9922700 22208000 12850000 14589000 13777000 13167000 10973000 7462000 13291000 601890 10072000 9582100 21659000 12910000 15175000 13875000 12918000 10672000 3 3 0 3 3 3 3 3 3 3 3 10261000 19140000 0 13479000 14922000 16206000 13877000 18572000 17769000 17384000 15507000 9552900 17839000 810760 14192000 14275000 16395000 14251000 18728000 17827000 17027000 15029000 4 4 0 4 4 4 4 4 4 4 4 3149000000 1530300000 1618700000 20650 674 18983 107030;107031;107032;107033;107034;107035 129776;129777;129778;129779;129780;129781;129782 129777 7 VLGMDPLPSK Oxidation (M) 1071.5634 0.56343168 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 1 0 By MS/MS 5 0 1 1 52.441 52.641 3 0.048208 15711 20211116_3433_TMUAki_TMT10x_P_F5 50.297 34.406 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20651 1576 18984 107036 129783 129783 2135 1 VLGMDPLPSK Unmodified 1055.5685 0.56851706 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 61.647 62.342 2 1.1461E-08 20880 20211116_3446_TMUAki_TMT10x_S_F7 133.57 106.46 5715200 8466200 72957 10278000 10946000 9498400 7691400 3615200 3396800 4083800 7087000 5322000 7906600 615090 10345000 10418000 9592200 7839000 3986600 3774500 3969200 6722400 1 1 1 1 1 1 1 1 1 1 1 5715200 8466200 72957 10278000 10946000 9498400 7691400 3615200 3396800 4083800 7087000 5322000 7906600 615090 10345000 10418000 9592200 7839000 3986600 3774500 3969200 6722400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 546540000 546540000 0 20652 1576 18984 107037;107038 129784;129785 129785 2 VLGPCSDILKR Unmodified 1256.6911 0.69109181 611 P10644 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed yes yes 0 0 0 1 By MS/MS 1 0 1 1 48.598 48.347 3 0.086828 15404 20211116_3439_TMUAki_TMT10x_S_F1 40.616 17.24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20653 611 18985 107039 129786 129786 1 VLGPYTFSICDTSNFSDYIR Unmodified 2354.0889 0.088897947 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By MS/MS 1 0 1 1 79.926 79.926 3 3.1064E-05 26238 20211116_3428_TMUAki_TMT10x_P_F1 78.917 68.86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20654 769 18986 107040 129787 129787 1 VLGQLHGGPSSCSATGTNR Unmodified 1897.9065 0.90645733 43 CON__P15636 yes yes 0 0 0 0 By MS/MS By MS/MS 2 1.41 2 1 2 1 33.898 33.91 3 4.5087E-58 7519 20211116_3428_TMUAki_TMT10x_P_F1 238.3 228.51 + 613120 930030 3976 1155100 1328900 1259200 701760 827880 1184400 757930 1014300 570820 868660 54093 1164000 1258000 1266700 759560 861410 1177800 743110 983770 4 4 2 4 4 4 4 4 4 4 4 332760 493870 1830.2 629090 1085400 1035700 501070 458200 597540 413610 568040 309800 461340 34545 638310 1025800 1017100 541790 493680 602620 405790 548880 2 2 1 2 2 2 2 2 2 2 2 280360 436160 2145.8 526000 243510 223490 200690 369680 586900 344310 446300 261020 407320 19548 525730 232210 249620 217770 367730 575180 337320 434890 2 2 1 2 2 2 2 2 2 2 2 155180000 115520000 39667000 20655 43 18987 107041;107042;107043 129788;129789;129790;129791 129788 4 VLGQLTETGVVSPEQFMK Oxidation (M) 1978.0081 0.0081284304 2444 Q96EK6 GNPNAT1 Glucosamine 6-phosphate N-acetyltransferase yes yes 0 0 1 0 By MS/MS 7 0 1 1 72.786 73.066 3 0.043267 24873 20211116_3435_TMUAki_TMT10x_P_F7 40.968 28.767 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20656 2444 18988 107044 129792 129792 2756 1 VLGQVSCELVSPK Unmodified 1414.749 0.74900062 1526 Q06265;Q06265-2 EXOSC9 Exosome complex component RRP45 yes no 0 0 0 0 By matching By MS/MS 6.5 0.5 1 1 1 1 61.494 61.754 3 0.0005779 20621 20211116_3446_TMUAki_TMT10x_S_F7 78.486 69.623 2895000 5195500 25021 4690800 3516800 2937500 2700800 4280400 3667900 4187000 3996600 2695700 4846100 272040 4794800 3353100 3130900 2812100 4281400 3700800 4093100 3845200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2895000 5195500 25021 4690800 3516800 2937500 2700800 4280400 3667900 4187000 3996600 2695700 4846100 272040 4794800 3353100 3130900 2812100 4281400 3700800 4093100 3845200 1 1 1 1 1 1 1 1 1 1 1 567700000 199180000 368520000 20657 1526 18989 107045;107046 129793 129793 1 VLGSEPAPVSAETLLSQAVEQLR Unmodified 2393.2802 0.28020419 2277 Q8TD55;Q8TD55-2 PLEKHO2 Pleckstrin homology domain-containing family O member 2 yes no 0 0 0 0 By MS/MS 6 0 1 1 80.857 80.846 3 5.2627E-06 26076 20211116_3434_TMUAki_TMT10x_P_F6 81.48 70.209 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20658 2277 18990 107047 129794 129794 1 VLGSQEALHPVHYEEK Unmodified 1834.9214 0.92136233 757 P21397;P21397-2 MAOA Amine oxidase [flavin-containing] A yes no 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 3 1 39.86 39.916 4 9.2819E-43 10645 20211116_3433_TMUAki_TMT10x_P_F5 224.86 195.88 5658000 9620400 51868 11528000 12630000 11381000 6783400 8060000 9237700 7326500 8715000 5268600 8984000 521360 11623000 11966000 11529000 7262400 8340500 9271900 7185700 8423200 5 5 4 5 5 5 5 5 5 5 5 3528800 6143000 44178 7203900 10762000 9673100 5019400 5114900 5869900 4632600 5449800 3286000 5736100 341320 7311200 10178000 9599600 5418000 5416100 5919500 4544300 5270300 3 3 2 3 3 3 3 3 3 3 3 2129300 3477400 7689.9 4323700 1867800 1707900 1764000 2945100 3367800 2693900 3265100 1982600 3247900 180040 4312000 1788800 1929100 1844400 2924400 3352300 2641400 3152900 2 2 2 2 2 2 2 2 2 2 2 1636700000 1347400000 289300000 20659 757 18991 107048;107049;107050;107051 129795;129796;129797;129798;129799 129796 5 VLGTAFDPFLGGK Unmodified 1320.7078 0.70778773 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 0 By MS/MS By MS/MS 2.98 1.89 10 21 25 1 1 4 4 37 29 48.826 48.775 2;3 1.8625E-29 27643 20211116_3439_TMUAki_TMT10x_S_F1 240.1 185.11 300200000 494480000 844140 461630000 327830000 452290000 354880000 275170000 267860000 305530000 360750000 279500000 461280000 23757000 473120000 314920000 457360000 355860000 289620000 279610000 297150000 345130000 44 44 23 44 44 44 44 44 44 44 44 176620000 285350000 363310 269110000 161840000 311400000 192660000 155230000 152950000 176760000 207810000 164440000 266200000 13439000 276310000 155890000 311110000 192590000 166350000 159280000 171750000 198770000 27 27 16 27 27 27 27 27 27 27 27 123580000 209140000 480830 192530000 165980000 140900000 162220000 119940000 114920000 128770000 152940000 115060000 195080000 10319000 196810000 159020000 146250000 163280000 123270000 120330000 125400000 146360000 17 17 7 17 17 17 17 17 17 17 17 40584000000 22002000000 18582000000 20660 2345 18992 107052;107053;107054;107055;107056;107057;107058;107059;107060;107061;107062;107063;107064;107065;107066;107067;107068;107069;107070;107071;107072;107073;107074;107075;107076;107077;107078;107079;107080;107081;107082;107083;107084;107085;107086;107087;107088;107089;107090;107091;107092;107093;107094;107095;107096;107097;107098;107099;107100;107101;107102;107103;107104;107105;107106;107107;107108;107109;107110;107111;107112;107113;107114;107115;107116;107117 129800;129801;129802;129803;129804;129805;129806;129807;129808;129809;129810;129811;129812;129813;129814;129815;129816;129817;129818;129819;129820;129821;129822;129823;129824;129825;129826;129827;129828;129829;129830;129831;129832;129833;129834;129835;129836;129837;129838;129839;129840;129841;129842;129843;129844;129845;129846;129847;129848;129849;129850;129851;129852;129853;129854;129855;129856;129857;129858;129859;129860;129861;129862;129863;129864;129865;129866;129867 129840 68 VLGTEAVQDPTKVEAHVR Unmodified 1948.0378 0.037789075 212 O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 42.843 42.977 4 9.693E-12 11813 20211116_3433_TMUAki_TMT10x_P_F5 123.08 106.96 12185000 18751000 112860 22381000 18068000 17504000 12608000 15974000 16507000 14530000 16910000 11345000 17510000 1126700 22503000 17189000 18098000 13195000 16275000 16637000 14250000 16300000 5 5 3 5 5 5 5 5 5 5 5 5430400 8128000 35380 9388800 12397000 12326000 7405100 6877800 7430800 6486900 7847200 5056100 7589000 534860 9533000 11761000 12253000 7773100 7256100 7573200 6351500 7557000 2 2 1 2 2 2 2 2 2 2 2 6754300 10623000 77483 12993000 5670600 5177900 5203400 9096200 9076200 8042800 9062600 6289300 9920800 591860 12970000 5428600 5845000 5422400 9019100 9063500 7898400 8742800 3 3 2 3 3 3 3 3 3 3 3 2044300000 1395200000 649060000 20661 212 18993 107118;107119;107120;107121 129868;129869;129870;129871;129872 129869 5 VLGTEELYGYLK Unmodified 1383.7286 0.72858275 736 P19784 CSNK2A2 Casein kinase II subunit alpha' yes yes 0 0 0 0 By MS/MS 6.33 0.471 2 1 3 75.677 75.682 2;3 1.5935E-15 26392 20211116_3446_TMUAki_TMT10x_S_F7 171.85 132.71 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20662 736 18994 107122;107123;107124 129873;129874;129875 129875 3 VLGTEELYGYLKK Unmodified 1511.8235 0.82354577 736 P19784 CSNK2A2 Casein kinase II subunit alpha' yes yes 0 0 0 1 By MS/MS By MS/MS 5 3.29 2 1 2 2 3 68.399 68.423 3 5.2401E-19 21612 20211116_3436_TMUAki_TMT10x_P_F8 182.02 145.17 44203000 76197000 961020 68079000 56669000 75597000 53680000 60169000 58843000 59305000 60522000 41165000 71069000 4727700 70138000 54319000 76203000 54766000 61928000 59696000 57956000 58332000 8 8 7 8 8 8 8 8 8 8 8 18870000 32495000 383470 29740000 25136000 46047000 25969000 26384000 26555000 26583000 26253000 17573000 30311000 2009600 30778000 24145000 45462000 26316000 27823000 26979000 25955000 25335000 3 3 3 3 3 3 3 3 3 3 3 25333000 43702000 577550 38340000 31533000 29550000 27712000 33785000 32288000 32721000 34269000 23592000 40759000 2718100 39360000 30174000 30741000 28450000 34105000 32717000 32001000 32997000 5 5 4 5 5 5 5 5 5 5 5 3827300000 2030800000 1796500000 20663 736 18995 107125;107126;107127;107128;107129 129876;129877;129878;129879;129880;129881;129882;129883 129877 8 VLGTPVETIELTEDRR Unmodified 1826.9738 0.97379183 831 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 57.568 57.427 3 9.808E-47 19114 20211116_3430_TMUAki_TMT10x_P_F3 241.89 194.97 20542000 32175000 416300 34083000 28101000 37148000 24684000 26026000 24067000 24521000 27522000 19130000 30030000 2191500 34681000 26883000 37405000 25197000 26978000 24633000 24011000 26443000 7 7 6 7 7 7 7 7 7 7 7 15297000 23600000 247630 24566000 22717000 32676000 19681000 19451000 18275000 18451000 20597000 14245000 22025000 1597500 25114000 21720000 32491000 20079000 20414000 18735000 18061000 19797000 5 5 4 5 5 5 5 5 5 5 5 5244900 8574400 168670 9516800 5384300 4471800 5002100 6574500 5792100 6070200 6925300 4884700 8004400 593990 9566700 5163300 4914000 5118300 6563300 5898100 5949200 6645500 2 2 2 2 2 2 2 2 2 2 2 2103900000 1432200000 671720000 20664 831 18996 107130;107131;107132;107133 129884;129885;129886;129887;129888;129889;129890 129884 7 VLGVPIIVQASQAEK Unmodified 1550.9032 0.90319307 1711 Q14498;Q14498-2;Q14498-3 RBM39 RNA-binding protein 39 yes no 0 0 0 0 By MS/MS By MS/MS 5.18 3.19 4 3 4 6 5 72.526 72.565 2;3 3.2207E-61 22844 20211116_3447_TMUAki_TMT10x_S_F8 311.76 275.82 90933000 147810000 1521800 144930000 104220000 151950000 103360000 109160000 107720000 113870000 113640000 84677000 137920000 8934700 148160000 99988000 153120000 105020000 112890000 109610000 111020000 109430000 22 22 17 22 22 21 22 20 22 21 21 54052000 85228000 1081800 84420000 60862000 113430000 64179000 65329000 64540000 69668000 67282000 50336000 79524000 5501600 86613000 58501000 112680000 64937000 68578000 65740000 67862000 64819000 12 12 11 12 12 12 12 11 12 12 12 36881000 62586000 439950 60513000 43358000 38527000 39179000 43835000 43180000 44201000 46354000 34342000 58392000 3433200 61551000 41487000 40436000 40083000 44312000 43866000 43154000 44615000 10 10 6 10 10 9 10 9 10 9 9 17183000000 9979500000 7203400000 20665 1711 18997 107134;107135;107136;107137;107138;107139;107140;107141;107142;107143;107144 129891;129892;129893;129894;129895;129896;129897;129898;129899;129900;129901;129902;129903;129904;129905;129906;129907;129908;129909;129910;129911;129912 129912 22 VLGYIQLGQK Unmodified 1117.6495 0.64954457 880 P30837 ALDH1B1 Aldehyde dehydrogenase X, mitochondrial yes yes 0 0 0 0 By MS/MS 3 0 1 1 66.96 66.67 2 2.7801E-08 22893 20211116_3430_TMUAki_TMT10x_P_F3 125.58 99.142 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20666 880 18998 107145 129913 129913 1 VLHEAEGHIVTCETNTGEVYR Unmodified 2413.1332 0.13322238 1355 P62318;P62318-2 SNRPD3 Small nuclear ribonucleoprotein Sm D3 yes no 0 0 0 0 By MS/MS By MS/MS 3.12 1.13 3 4 5 11 1 9 15 36.88 36.864 3;4 4.5898E-83 11760 20211116_3429_TMUAki_TMT10x_P_F2 288 265.99 12963000 23622000 314170 26153000 22711000 23738000 16525000 19197000 20815000 16690000 21687000 12072000 22051000 1189300 26466000 21638000 24230000 17219000 19672000 21019000 16404000 20893000 35 35 17 35 35 35 35 35 35 35 35 7242100 12932000 105980 14603000 17097000 18514000 11329000 10905000 11117000 9029800 12004000 6743900 12073000 626830 14838000 16254000 18448000 11786000 11416000 11351000 8896300 11552000 12 12 7 12 12 12 12 12 12 12 12 5721000 10690000 208190 11550000 5614200 5224600 5196500 8291600 9697500 7660400 9682800 5328200 9978100 562480 11628000 5383900 5781600 5432200 8256600 9668000 7507600 9341100 23 23 10 23 23 23 23 23 23 23 23 15243000000 10238000000 5004500000 20667 1355 18999 107146;107147;107148;107149;107150;107151;107152;107153;107154;107155;107156;107157;107158;107159;107160;107161;107162;107163;107164;107165;107166;107167;107168;107169 129914;129915;129916;129917;129918;129919;129920;129921;129922;129923;129924;129925;129926;129927;129928;129929;129930;129931;129932;129933;129934;129935;129936;129937;129938;129939;129940;129941;129942;129943;129944;129945;129946;129947;129948;129949;129950;129951;129952 129917 39 VLHGEQYLELYKPLPR Unmodified 1954.0676 0.06763264 1161 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 3.2 3 1 2 3 3 57.479 57.4 3;4 1.2855E-42 17036 20211116_3436_TMUAki_TMT10x_P_F8 224.67 197.26 20371000 33436000 200420 34763000 27986000 29617000 23585000 26974000 26240000 26160000 26408000 18968000 31205000 1832900 35293000 26726000 30430000 24236000 27535000 26585000 25583000 25470000 4 4 2 4 4 4 4 4 4 4 4 8610400 14087000 62255 14352000 11000000 15839000 9941000 11868000 10785000 10491000 10449000 8017300 13146000 766200 14645000 10522000 15955000 10165000 12226000 10923000 10303000 10090000 2 2 1 2 2 2 2 2 2 2 2 11761000 19349000 138170 20411000 16986000 13778000 13644000 15106000 15455000 15669000 15959000 10951000 18059000 1066700 20648000 16204000 14475000 14071000 15308000 15662000 15280000 15379000 2 2 1 2 2 2 2 2 2 2 2 9035700000 4419400000 4616400000 20668 1161 19000 107170;107171;107172;107173;107174;107175 129953;129954;129955;129956;129957 129955 5 VLHMDRNPYYGGESASITPLEDLYK Oxidation (M) 2883.3749 0.37490921 1133 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 1 1 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 62.33 62.386 4 7.461E-08 18902 20211116_3445_TMUAki_TMT10x_S_F6 92.426 78.695 6292100 12216000 140480 11720000 8561900 11602000 7504900 11468000 10411000 9704000 9804400 5859600 11397000 684370 11990000 8191500 11824000 7757800 11614000 10443000 9550100 9476700 3 3 3 3 3 3 3 3 3 3 3 2239200 4059300 33776 4385900 2830800 6334700 3001900 4278800 3813000 3551400 3235300 2085200 3789000 225410 4480400 2720600 6287000 3061100 4432400 3823000 3498500 3138900 1 1 1 1 1 1 1 1 1 1 1 4052900 8156900 106710 7334100 5731100 5267700 4503000 7189100 6598000 6152600 6569000 3774400 7608200 458960 7509200 5470900 5537000 4696700 7181400 6619600 6051600 6337800 2 2 2 2 2 2 2 2 2 2 2 2897100000 1775200000 1121900000 20669 1133 19001 107176;107177;107178 129958;129959;129960 129959 1497 3 VLHMDRNPYYGGESASITPLEDLYKR Oxidation (M) 3039.476 0.47602024 1133 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 1 2 By MS/MS By MS/MS 7.17 0.687 1 3 2 3 3 56.049 56.41 4;5 2.3017E-17 16183 20211116_3447_TMUAki_TMT10x_S_F8 131.26 124.6 50696000 93117000 1503200 87676000 66069000 89767000 55420000 71057000 73757000 69133000 70703000 47214000 86868000 5819300 89859000 63173000 90899000 57339000 73132000 74124000 67599000 68299000 9 9 9 9 9 9 9 9 9 9 9 21766000 42412000 771180 33182000 30578000 60145000 27156000 35322000 38013000 33652000 30473000 20272000 39540000 2646700 34906000 29281000 59051000 28061000 37116000 37929000 32935000 29629000 4 4 4 4 4 4 4 4 4 4 4 28930000 50706000 732010 54494000 35491000 29622000 28263000 35735000 35744000 35482000 40230000 26942000 47328000 3172600 54953000 33893000 31849000 29278000 36017000 36195000 34664000 38670000 5 5 5 5 5 5 5 5 5 5 5 18218000000 9638400000 8579100000 20670 1133 19002 107179;107180;107181;107182;107183;107184 129961;129962;129963;129964;129965;129966;129967 129966 1497 7 VLHMDRNPYYGGESASITPLEDLYKR Unmodified 3023.4811 0.48110562 1133 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 2 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 61.04 61.389 5 4.1786E-49 18738 20211116_3436_TMUAki_TMT10x_P_F8 205.13 194.63 59746000 99846000 2243600 104060000 79369000 76433000 68361000 43568000 38269000 46698000 67743000 55646000 93183000 7319100 105450000 75962000 78830000 68986000 46049000 41295000 45479000 64436000 8 8 8 8 8 8 8 8 8 8 8 27478000 43726000 950840 48984000 32144000 47506000 34966000 21624000 18549000 21969000 31151000 25592000 40821000 3229600 49579000 30950000 47905000 34812000 23303000 20036000 21442000 29660000 3 3 3 3 3 3 3 3 3 3 3 32268000 56120000 1292700 55078000 47225000 28927000 33395000 21944000 19720000 24730000 36591000 30055000 52362000 4089500 55871000 45012000 30925000 34174000 22747000 21259000 24037000 34776000 5 5 5 5 5 5 5 5 5 5 5 9758500000 5859100000 3899400000 20671 1133 19002 107185;107186;107187;107188 129968;129969;129970;129971;129972;129973;129974;129975 129970 8 VLHMDRNPYYGGESSSITPLEELYKR Oxidation (M) 3069.4866 0.48658493 884 P31150 GDI1 Rab GDP dissociation inhibitor alpha yes yes 0 0 1 2 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 55.663 55.992 5 3.296E-09 16543 20211116_3436_TMUAki_TMT10x_P_F8 100.81 87.618 16229000 28962000 5752.8 32160000 19627000 22911000 15670000 28242000 29177000 25620000 26049000 15110000 27036000 1343300 32444000 18717000 24030000 16520000 28367000 28981000 25130000 25225000 3 3 1 3 3 3 3 3 3 3 3 2523000 3906700 5752.8 3796500 3334200 6369900 3186000 3923600 3537200 3388100 3363300 2349200 3645000 225900 3919400 3193700 6275500 3250300 4096700 3577000 3331000 3249800 1 1 1 1 1 1 1 1 1 1 1 13706000 25055000 0 28363000 16293000 16541000 12484000 24318000 25640000 22232000 22686000 12761000 23391000 1117400 28525000 15523000 17755000 13270000 24270000 25404000 21799000 21975000 2 2 0 2 2 2 2 2 2 2 2 2391300000 796830000 1594500000 20672 884 19003 107189;107190 129976;129977;129978 129976 1069 3 VLHMVGDKPVFSFQPR Oxidation (M) 1871.9716 0.97162377 2883 Q9NP81;Q9NP81-2 SARS2 Serine--tRNA ligase, mitochondrial yes no 0 0 1 1 By MS/MS 3 0 1 1 52.526 52.159 4 0.013737 18116 20211116_3441_TMUAki_TMT10x_S_F3 51.606 39.321 991080 1739500 14778 1869700 1151600 884740 847490 1734800 1535800 1336600 1697100 922900 1623600 98188 1883500 1097500 981180 896860 1709000 1538000 1321800 1632100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 991080 1739500 14778 1869700 1151600 884740 847490 1734800 1535800 1336600 1697100 922900 1623600 98188 1883500 1097500 981180 896860 1709000 1538000 1321800 1632100 1 1 1 1 1 1 1 1 1 1 1 125850000 0 125850000 20673 2883 19004 107191 129979 129979 3001 1 VLIAAHGNSLR Unmodified 1149.6618 0.66184059 722 P18669;P15259 PGAM1;PGAM2 Phosphoglycerate mutase 1;Phosphoglycerate mutase 2 yes no 0 0 0 0 By MS/MS By MS/MS 2.46 1.39 4 4 2 1 2 7 6 33.674 33.63 2;3 1.8468E-16 9343 20211116_3429_TMUAki_TMT10x_P_F2 211.84 176.57 18715000 31499000 97313 29413000 23378000 24187000 20784000 17216000 17693000 16690000 23301000 17425000 29384000 1525600 30075000 22344000 24806000 21122000 17840000 18334000 16322000 22304000 13 13 7 13 13 13 13 13 13 13 13 8966800 14323000 17247 13345000 13037000 15138000 9733700 7632800 7766800 7415700 10375000 8347600 13361000 635710 13710000 12406000 15142000 9985100 8132700 8080000 7251500 9927600 6 6 1 6 6 6 6 6 6 6 6 9748600 17176000 80065 16068000 10341000 9049200 11050000 9583300 9926600 9274700 12926000 9077500 16023000 889890 16366000 9938000 9663700 11137000 9707500 10254000 9070900 12377000 7 7 6 7 7 7 7 7 7 7 7 4236400000 2527300000 1709100000 20674 722 19005 107192;107193;107194;107195;107196;107197;107198;107199;107200;107201;107202;107203;107204 129980;129981;129982;129983;129984;129985;129986;129987;129988;129989;129990;129991;129992;129993;129994 129982 15 VLIEGSINSVR Unmodified 1185.6717 0.67173657 1269 P59998;P59998-3;P59998-2 ARPC4 Actin-related protein 2/3 complex subunit 4 yes no 0 0 0 0 By MS/MS By MS/MS 6.6 0.49 2 3 3 2 51.167 51.412 2 1.5582E-14 14357 20211116_3445_TMUAki_TMT10x_S_F6 191.4 143.66 24679000 44405000 64451 41799000 40862000 39967000 28567000 37983000 34243000 31930000 37445000 22977000 41425000 2123200 42799000 38861000 40785000 29795000 38537000 34702000 31434000 36023000 4 4 1 4 4 4 4 4 4 4 4 10882000 18918000 0 18003000 25649000 27775000 16549000 15590000 14801000 13727000 15865000 10132000 17649000 1025500 18577000 24360000 27419000 17208000 16410000 15172000 13484000 15271000 2 2 0 2 2 2 2 2 2 2 2 13796000 25487000 64451 23796000 15212000 12193000 12018000 22393000 19442000 18203000 21581000 12845000 23776000 1097700 24222000 14502000 13366000 12587000 22127000 19530000 17950000 20752000 2 2 1 2 2 2 2 2 2 2 2 1632500000 501480000 1131000000 20675 1269 19006 107205;107206;107207;107208;107209 129995;129996;129997;129998;129999;130000 129999 6 VLIGGDETPEGQR Unmodified 1369.6838 0.68375782 283 O60701;O60701-3;O60701-2 UGDH UDP-glucose 6-dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS 2.33 0.667 1 4 4 4 5 42.098 41.918 2;3 1.1365E-35 12499 20211116_3430_TMUAki_TMT10x_P_F3 259.34 238.64 3306700 5139200 25693 6108600 5464000 4890500 3438300 4208600 4833200 3500800 4844200 3078900 4799100 309980 6145100 5188600 5041900 3636700 4292300 4856300 3448200 4672700 6 6 4 6 6 6 6 6 6 6 6 1679100 2507200 7802.3 3029100 4053700 3660400 2071300 2023300 2298000 1693500 2367900 1563400 2341500 161410 3062800 3836300 3653200 2211700 2129900 2330400 1667500 2282000 3 3 1 3 3 3 3 3 3 3 3 1627600 2632000 17891 3079500 1410300 1230100 1367000 2185300 2535200 1807300 2476300 1515600 2457600 148570 3082400 1352300 1388700 1425000 2162400 2525900 1780700 2390600 3 3 3 3 3 3 3 3 3 3 3 363370000 201520000 161850000 20676 283 19007 107210;107211;107212;107213;107214;107215;107216;107217;107218 130001;130002;130003;130004;130005;130006;130007;130008 130003 8 VLIGVGK Unmodified 684.45341 0.45341094 1798 Q15393;Q15393-3 SF3B3 Splicing factor 3B subunit 3 yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 51.116 50.946 2 0.0024249 15932 20211116_3429_TMUAki_TMT10x_P_F2 126.05 63.707 20923000 32259000 47264 32043000 25663000 28680000 22829000 22765000 22191000 22486000 24940000 19482000 30100000 1800900 32654000 24536000 29292000 23285000 23436000 22701000 21973000 23974000 4 4 2 4 4 4 4 4 4 4 4 12133000 18113000 0 18092000 16846000 21019000 14123000 12561000 12629000 12664000 13912000 11296000 16901000 1027700 18502000 16081000 21042000 14421000 13201000 12959000 12365000 13381000 2 2 0 2 2 2 2 2 2 2 2 8790700 14146000 47264 13951000 8817300 7661400 8706100 10204000 9561500 9821600 11028000 8185300 13199000 773230 14152000 8454500 8250000 8863300 10235000 9741800 9608000 10593000 2 2 2 2 2 2 2 2 2 2 2 1786700000 1044200000 742450000 20677 1798 19008 107219;107220;107221;107222 130009;130010;130011;130012 130010 4 VLIIGGGDGGVLR Unmodified 1224.719 0.71902112 735 P19623 SRM Spermidine synthase yes yes 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 2 3 63.32 63.575 2 7.2121E-23 19072 20211116_3447_TMUAki_TMT10x_S_F8 213.63 169.86 25947000 41662000 339990 45513000 31403000 37313000 28087000 26227000 24759000 25743000 31581000 24162000 38889000 2544500 46036000 30048000 38269000 28560000 27210000 25575000 25162000 30254000 4 4 4 4 4 4 4 4 4 4 4 14247000 21634000 91764 24202000 18079000 26100000 15926000 14366000 13145000 13933000 16925000 13266000 20197000 1320400 24537000 17287000 26208000 16181000 15185000 13628000 13625000 16210000 2 2 2 2 2 2 2 2 2 2 2 11700000 20027000 248220 21311000 13324000 11214000 12162000 11861000 11614000 11810000 14656000 10896000 18692000 1224100 21499000 12761000 12061000 12380000 12025000 11947000 11537000 14044000 2 2 2 2 2 2 2 2 2 2 2 2746700000 1480900000 1265800000 20678 735 19009 107223;107224;107225;107226;107227 130013;130014;130015;130016 130016 4 VLIIGSGGR Unmodified 870.5287 0.52870115 766 P22102;P22102-2 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 46.295 46.145 2 3.9406E-06 14056 20211116_3429_TMUAki_TMT10x_P_F2 187.8 123.04 17917000 29400000 80929 32246000 27126000 26401000 18394000 23032000 23659000 21986000 24154000 16682000 27444000 1597300 32607000 25789000 27180000 19277000 23556000 23856000 21516000 23285000 6 6 3 6 6 6 6 6 6 6 6 8472300 13342000 32546 14149000 17703000 18741000 10511000 10955000 10716000 10046000 11195000 7888300 12453000 801440 14446000 16791000 18634000 11044000 11504000 10910000 9849200 10784000 3 3 1 3 3 3 3 3 3 3 3 9444600 16058000 48382 18097000 9422900 7659100 7882500 12078000 12943000 11940000 12959000 8794000 14991000 795900 18161000 8997200 8545700 8232800 12053000 12946000 11667000 12500000 3 3 2 3 3 3 3 3 3 3 3 1361900000 882970000 478930000 20679 766 19010 107228;107229;107230;107231;107232;107233 130017;130018;130019;130020;130021;130022 130018 6 VLIPIHEANR Unmodified 1160.6666 0.66659162 2525 Q96N67;Q96N67-3;Q96N67-2;Q96N67-4;Q96N67-5;Q96N67-6 DOCK7 Dedicator of cytokinesis protein 7 yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 2 4 2 4 38.769 38.933 3 0.00067865 9362 20211116_3445_TMUAki_TMT10x_S_F6 83.883 62.936 200020 299650 2756.8 371410 184840 175510 173870 207020 228220 193780 254790 186260 279870 18940 370900 177120 191590 178620 208500 230740 189800 244960 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 200020 299650 2756.8 371410 184840 175510 173870 207020 228220 193780 254790 186260 279870 18940 370900 177120 191590 178620 208500 230740 189800 244960 1 1 1 1 1 1 1 1 1 1 1 16507000 0 16507000 20680 2525 19011 107234;107235;107236;107237;107238;107239 130023;130024;130025;130026;130027;130028 130025 6 VLIPSYAAGSIIGK Unmodified 1387.8075 0.80750177 3200;1153 Q9UNW9;P51513-2;P51513;P51513-5 NOVA2;NOVA1 RNA-binding protein Nova-2;RNA-binding protein Nova-1 no no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 74.328 74.207 3 2.0595E-06 24291 20211116_3431_TMUAki_TMT10x_P_F4 109.22 64.911 9497100 14549000 47073 16444000 9625400 12273000 10549000 7711700 7720800 7785700 10063000 8843000 13583000 832450 16579000 9255300 12658000 10565000 8073100 8061500 7600900 9634600 4 4 3 4 4 4 4 4 4 4 4 4906600 7605000 37376 8456300 5167200 8084600 5642300 4259300 4048700 4172600 5281900 4568800 7099500 445270 8561100 4968800 8173000 5649100 4521000 4232400 4078700 5057000 2 2 2 2 2 2 2 2 2 2 2 4590500 6944200 9696.8 7987500 4458200 4188700 4907000 3452400 3672100 3613100 4780800 4274200 6483500 387180 8018000 4286500 4484900 4915700 3552100 3829100 3522100 4577600 2 2 1 2 2 2 2 2 2 2 2 932180000 619220000 312960000 20681 3200;1153 19012 107240;107241;107242;107243 130029;130030;130031;130032 130030 4 VLISDSLDPCCR Unmodified 1433.6643 0.66428471 201 O43175 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 0 By MS/MS By MS/MS 4.17 0.687 1 3 2 2 4 57.569 57.568 2;3 2.1321E-16 16574 20211116_3444_TMUAki_TMT10x_S_F5 204.52 195.31 18029000 30425000 208050 32369000 26410000 35997000 22687000 37644000 33479000 31297000 30508000 16788000 28397000 1788100 32938000 25241000 36484000 23541000 38000000 33481000 30828000 29521000 7 7 5 7 7 7 7 7 7 7 7 8458900 13589000 103260 14145000 16201000 25391000 13585000 18381000 16234000 14806000 14299000 7876800 12682000 900230 14559000 15475000 25015000 13998000 18935000 16331000 14608000 13854000 3 3 2 3 3 3 3 3 3 3 3 9569700 16836000 104790 18224000 10209000 10606000 9102600 19263000 17245000 16491000 16208000 8911000 15715000 887870 18380000 9766300 11469000 9543100 19065000 17150000 16220000 15667000 4 4 3 4 4 4 4 4 4 4 4 2587100000 1178400000 1408700000 20682 201 19013 107244;107245;107246;107247;107248;107249 130033;130034;130035;130036;130037;130038;130039;130040 130039 8 VLISDSLDPCCRK Unmodified 1561.7592 0.75924773 201 O43175 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 1 By MS/MS By MS/MS 6 0.756 2 3 2 4 3 50.133 50.398 3;4 9.5892E-20 16016 20211116_3446_TMUAki_TMT10x_S_F7 196.15 176.83 43164000 65996000 470990 83856000 85445000 76957000 52134000 52385000 60456000 52178000 64795000 40193000 61648000 4603800 84182000 81119000 78272000 54881000 54496000 61294000 50969000 62371000 7 7 6 7 7 7 7 7 7 7 7 24780000 36179000 285490 46570000 68569000 63252000 38421000 30062000 34500000 28999000 36722000 23075000 33798000 2933800 47024000 65007000 62662000 40427000 32208000 35348000 28366000 35356000 4 4 4 4 4 4 4 4 4 4 4 18384000 29817000 185490 37286000 16876000 13706000 13713000 22323000 25957000 23179000 28073000 17119000 27850000 1670000 37158000 16112000 15611000 14454000 22287000 25946000 22603000 27015000 3 3 2 3 3 3 3 3 3 3 3 8013600000 4303400000 3710200000 20683 201 19014 107250;107251;107252;107253;107254;107255;107256 130041;130042;130043;130044;130045;130046;130047 130047 7 VLISSLK Unmodified 758.49019 0.49019038 2202 Q8N684;Q8N684-2;Q8N684-3 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes no 0 0 0 0 By MS/MS 2 0 1 1 55.819 55.613 2 0.021178 16603 20211116_3440_TMUAki_TMT10x_S_F2 82.671 31.099 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20684 2202 19015 107257 130048 130048 1 VLISSLQDCLHGIESK Unmodified 1797.9295 0.92948418 1856 Q16630;Q16630-2;Q16630-3 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes no 0 0 0 0 By MS/MS By MS/MS 5.56 2.59 2 1 1 3 2 4 5 73.44 73.463 3 4.7521E-47 23682 20211116_3436_TMUAki_TMT10x_P_F8 246.03 235.38 67691000 111240000 725640 108730000 74463000 109080000 73990000 73542000 61901000 79776000 82281000 63032000 103790000 5576800 111110000 71430000 110300000 74701000 76752000 64225000 77656000 78742000 11 11 8 11 11 11 11 11 11 11 11 32742000 53430000 391020 50464000 33999000 68177000 35914000 36856000 32219000 38164000 38922000 30489000 49845000 3079800 51956000 32671000 67658000 36215000 39093000 33177000 37219000 37339000 7 7 5 7 7 7 7 7 7 7 7 34949000 57810000 334630 58270000 40464000 40901000 38075000 36685000 29681000 41612000 43359000 32543000 53945000 2497000 59153000 38759000 42644000 38486000 37659000 31048000 40438000 41404000 4 4 3 4 4 4 4 4 4 4 4 12956000000 5357300000 7598800000 20685 1856 19016 107258;107259;107260;107261;107262;107263;107264;107265;107266 130049;130050;130051;130052;130053;130054;130055;130056;130057;130058;130059;130060;130061 130054 13 VLISTDVWAR Unmodified 1158.6397 0.63970816 973 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 0 0 0 0 By MS/MS 1 0 1 1 64.952 64.952 2 0.014459 20096 20211116_3428_TMUAki_TMT10x_P_F1 62.823 29.702 7717300 12723000 58371 12498000 8377700 13952000 10310000 8748100 7811200 6861200 10007000 7186000 11871000 703460 12787000 8085000 14007000 10280000 9100700 8133900 6778800 9585100 1 1 1 1 1 1 1 1 1 1 1 7717300 12723000 58371 12498000 8377700 13952000 10310000 8748100 7811200 6861200 10007000 7186000 11871000 703460 12787000 8085000 14007000 10280000 9100700 8133900 6778800 9585100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 103540000 103540000 0 20686 973 19017 107267 130062 130062 1 VLITTDLLAR Unmodified 1113.6758 0.67575932 1277;1697 P60842;Q14240;Q14240-2 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS 5 2.42 2 1 1 2 2 2 2 6 6 67.949 67.991 2 8.8441E-19 20824 20211116_3447_TMUAki_TMT10x_S_F8 245.16 219.33 73699000 123890000 559130 120360000 91313000 104360000 81706000 78706000 73208000 75209000 92987000 68622000 115590000 6464600 122800000 87321000 106730000 83117000 81213000 75550000 73597000 89089000 9 9 5 9 9 9 9 9 9 9 9 33142000 53971000 332390 52262000 41501000 64180000 39311000 35882000 33249000 33529000 39948000 30859000 50354000 2860500 53614000 39738000 64012000 39802000 37840000 34328000 32843000 38329000 4 4 2 4 4 4 4 4 4 4 4 40556000 69917000 226740 68097000 49812000 40180000 42394000 42824000 39959000 41680000 53039000 37763000 65233000 3604100 69181000 47583000 42714000 43315000 43373000 41222000 40754000 50760000 5 5 3 5 5 5 5 5 5 5 5 24999000000 14828000000 10171000000 20687 1277;1697 19018 107268;107269;107270;107271;107272;107273;107274;107275;107276;107277;107278;107279 130063;130064;130065;130066;130067;130068;130069;130070;130071;130072;130073;130074 130073 12 VLIVSEDPELPYMRPPLSK Oxidation (M) 2198.1657 0.1656917 448 O95831;O95831-3;O95831-6;O95831-4 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 0 0 1 1 By MS/MS By MS/MS 6.6 0.49 2 3 3 2 66.48 66.855 3;4 9.912E-05 22249 20211116_3435_TMUAki_TMT10x_P_F7 75.682 62.269 25645000 42557000 135020 40163000 29969000 48639000 30011000 37557000 35031000 36447000 34907000 23878000 39701000 2220600 41269000 28739000 48778000 30595000 38712000 35414000 35641000 33677000 8 8 5 8 8 8 8 8 8 8 8 18592000 30327000 101640 28174000 20894000 39998000 22513000 25965000 24314000 25863000 25041000 17311000 28290000 1639300 29071000 20079000 39703000 22807000 27105000 24682000 25263000 24133000 6 6 4 6 6 6 6 6 6 6 6 7052600 12230000 33386 11990000 9074500 8640400 7498400 11592000 10717000 10584000 9866600 6566400 11411000 581280 12198000 8659400 9075200 7788000 11607000 10732000 10378000 9544300 2 2 1 2 2 2 2 2 2 2 2 3532400000 2754300000 778030000 20688 448 19019 107280;107281;107282;107283;107284 130075;130076;130077;130078;130079;130080;130081;130082;130083 130079 330 9 VLIVSEDPELPYMRPPLSK Unmodified 2182.1708 0.17077708 448 O95831;O95831-3;O95831-6;O95831-4 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 0 0 0 1 By MS/MS 7.67 0.471 1 2 3 74.989 75.055 3;4 5.0058E-24 24385 20211116_3436_TMUAki_TMT10x_P_F8 172.66 150.22 13212000 19554000 71100 19725000 11977000 16943000 14723000 7833000 6877500 8547900 13280000 12302000 18246000 1103200 20069000 11555000 17227000 14547000 8445200 7567200 8318900 12613000 4 4 2 4 4 4 4 4 4 4 4 13212000 19554000 71100 19725000 11977000 16943000 14723000 7833000 6877500 8547900 13280000 12302000 18246000 1103200 20069000 11555000 17227000 14547000 8445200 7567200 8318900 12613000 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1579900000 1579900000 0 20689 448 19019 107285;107286;107287 130084;130085;130086;130087 130085 4 VLKDQPPNSVEGLLNALR Unmodified 1962.0898 0.089824645 2958 Q9NUQ9;Q9NUQ9-2 FAM49B Protein FAM49B yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 75.388 75.35 3 2.114E-31 24300 20211116_3428_TMUAki_TMT10x_P_F1 191.64 170.18 5670900 10664000 35574 7264300 8006900 13843000 8727300 10538000 10342000 10457000 9116100 5280300 9937900 511370 7749200 7696000 13622000 8864800 10878000 10407000 10216000 8831900 3 3 2 3 3 3 3 3 3 3 3 3844500 6863700 8190.8 4630100 4707000 10262000 5983500 6746900 6759500 6681200 5662800 3579500 6396200 313790 4965400 4544300 10028000 6026600 7035200 6803800 6527900 5496700 2 2 1 2 2 2 2 2 2 2 2 1826400 3800300 27383 2634200 3299900 3581200 2743800 3790900 3582600 3775500 3453300 1700700 3541700 197580 2783800 3151800 3594600 2838200 3843300 3603400 3688000 3335300 1 1 1 1 1 1 1 1 1 1 1 1485500000 944270000 541260000 20690 2958 19020 107288;107289;107290 130088;130089;130090;130091 130089 4 VLKPEWFR Unmodified 1073.6022 0.60220045 2057 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme yes yes 0 0 0 1 By MS/MS 3 0 1 1 55.668 55.472 3 0.036352 18289 20211116_3430_TMUAki_TMT10x_P_F3 59.931 34.372 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20691 2057 19021 107291 130092 130092 1 VLLAAAVCTK Unmodified 1044.6002 0.60015154 1072 P48444 ARCN1 Coatomer subunit delta yes yes 0 0 0 0 By MS/MS 3 0 1 1 59.344 58.926 3 0.099214 20781 20211116_3441_TMUAki_TMT10x_S_F3 37.556 21.665 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20692 1072 19022 107292 130093 130093 1 VLLALHDR Unmodified 935.55525 0.55525025 3079 Q9UBL3;Q9UBL3-3;Q9UBL3-2 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 yes no 0 0 0 0 By MS/MS 7 0 1 1 40.212 40.845 3 0.00076393 12033 20211116_3446_TMUAki_TMT10x_S_F7 114.28 105.42 123600 202100 5815.5 217390 144230 112600 149790 154290 179850 162500 167370 115130 188640 15956 219120 138790 122110 152580 155020 181210 158370 161840 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 123600 202100 5815.5 217390 144230 112600 149790 154290 179850 162500 167370 115130 188640 15956 219120 138790 122110 152580 155020 181210 158370 161840 1 1 1 1 1 1 1 1 1 1 1 59337000 0 59337000 20693 3079 19023 107293 130094 130094 1 VLLATLSIPITPER Unmodified 1521.913 0.91302948 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.667 1 4 4 5 4 78.866 78.822 2;3 5.4395E-37 26231 20211116_3431_TMUAki_TMT10x_P_F4 241.03 197.23 20892000 33216000 226670 30626000 22406000 29944000 25364000 19197000 17734000 20852000 24065000 19452000 30984000 1691300 31416000 21554000 30306000 25337000 20110000 18600000 20297000 23019000 8 8 5 8 8 8 8 8 8 8 8 11022000 16804000 129990 15853000 10039000 18701000 12754000 9733700 9216300 10459000 11906000 10261000 15677000 769270 16283000 9685300 18674000 12686000 10371000 9626300 10184000 11402000 4 4 2 4 4 4 4 4 4 4 4 9869900 16411000 96678 14772000 12367000 11243000 12610000 9463100 8517300 10393000 12160000 9190400 15308000 922060 15133000 11869000 11632000 12651000 9739100 8973300 10112000 11617000 4 4 3 4 4 4 4 4 4 4 4 8201500000 3885800000 4315700000 20694 1684 19024 107294;107295;107296;107297;107298;107299;107300;107301;107302 130095;130096;130097;130098;130099;130100;130101;130102;130103 130098 9 VLLATLSIPITPERTDIAR Unmodified 2078.2099 0.20993978 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 76.761 76.701 3 3.9093E-12 25323 20211116_3431_TMUAki_TMT10x_P_F4 125.73 108.65 7730300 13330000 29258 10225000 9453700 16044000 10034000 12889000 8634800 10203000 11417000 7197800 12427000 686060 10737000 9080600 15915000 10104000 13184000 8944400 10075000 10928000 2 2 1 2 2 2 2 2 2 2 2 5034500 8298500 0 6241100 5206500 12464000 6283100 9415800 5454600 7039200 7211500 4687500 7735700 413560 6605400 5018900 12245000 6291300 9656000 5647700 6972800 6902300 1 1 0 1 1 1 1 1 1 1 1 2695800 5032000 29258 3983600 4247200 3579800 3750600 3473600 3180300 3163600 4206000 2510300 4691400 272500 4132000 4061700 3669400 3812700 3527800 3296700 3102500 4025600 1 1 1 1 1 1 1 1 1 1 1 2063500000 1001000000 1062400000 20695 1684 19025 107303;107304;107305 130104;130105 130104 2 VLLDIFTGVR Unmodified 1131.6652 0.66519463 1129 P49916;P49916-3 LIG3 DNA ligase 3 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 80.271 80.215 2 4.4175E-11 29326 20211116_3441_TMUAki_TMT10x_S_F3 210.37 137.33 5101000 8723900 5624.8 8325800 6698600 8159900 6818500 5441100 5078200 5590600 6422900 4749300 8138900 418140 8519300 6424200 8261900 6856200 5673800 5290000 5453900 6154300 2 2 1 2 2 2 2 2 2 2 2 2482100 3791100 0 3628200 2428800 4767000 2808900 2572100 2464400 2557500 2778500 2310800 3536900 172650 3729900 2336300 4736700 2818700 2725400 2533300 2498400 2670600 1 1 0 1 1 1 1 1 1 1 1 2618900 4932900 5624.8 4697600 4269800 3392900 4009600 2869000 2613700 3033100 3644400 2438500 4602000 245490 4789500 4087900 3525100 4037500 2948400 2756700 2955600 3483700 1 1 1 1 1 1 1 1 1 1 1 1087500000 642830000 444620000 20696 1129 19026 107306;107307 130106;130107 130107 2 VLLEAGEGLVTITPTTGSDGRPDAR Unmodified 2524.3133 0.31329523 3013 Q9NY33;Q9NY33-4 DPP3 Dipeptidyl peptidase 3 yes no 0 0 0 1 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 69.463 69.447 3 3.6981E-30 22367 20211116_3431_TMUAki_TMT10x_P_F4 177.32 166.49 15026000 26446000 197490 26025000 18340000 22467000 18175000 16535000 15351000 16456000 19931000 13992000 24675000 1423700 26527000 17590000 22974000 18357000 17109000 15903000 16075000 19085000 9 9 8 9 9 9 9 9 9 9 9 6378300 10987000 119700 11158000 7323000 13362000 8241600 7246200 6819300 7018700 8557600 5939700 10253000 653590 11404000 7052000 13339000 8267800 7669300 7061400 6864200 8201400 4 4 4 4 4 4 4 4 4 4 4 8648000 15459000 77789 14868000 11017000 9105000 9933500 9289100 8531800 9437300 11373000 8052300 14422000 770090 15123000 10538000 9635200 10089000 9439600 8841900 9210900 10884000 5 5 4 5 5 5 5 5 5 5 5 4400700000 1577400000 2823300000 20697 3013 19027 107308;107309;107310;107311;107312 130108;130109;130110;130111;130112;130113;130114;130115;130116 130109 9 VLLESEQFLTELTR Unmodified 1676.8985 0.89850163 962 P37108 SRP14 Signal recognition particle 14 kDa protein yes yes 0 0 0 0 By MS/MS By MS/MS 3.88 1.84 3 4 4 4 4 4 2 12 13 81.042 81.032 2;3 1.198E-74 27488 20211116_3442_TMUAki_TMT10x_S_F4 335.32 276.34 123850000 201230000 1358700 190440000 118400000 165260000 132610000 101580000 95131000 113270000 143120000 115320000 187730000 10317000 194670000 113890000 167750000 132610000 106840000 100120000 110140000 136580000 28 28 17 28 27 27 28 28 28 28 28 74318000 116670000 886580 107550000 59143000 113540000 72707000 59437000 58704000 68500000 83539000 69198000 108830000 6028600 110450000 57055000 114080000 72608000 63433000 61216000 66527000 79818000 14 14 9 14 14 14 14 14 14 14 14 49535000 84562000 472080 82887000 59255000 51727000 59903000 42141000 36426000 44772000 59581000 46122000 78899000 4288600 84211000 56833000 53674000 60002000 43408000 38907000 43618000 56759000 14 14 8 14 13 13 14 14 14 14 14 35117000000 15348000000 19769000000 20698 962 19028 107313;107314;107315;107316;107317;107318;107319;107320;107321;107322;107323;107324;107325;107326;107327;107328;107329;107330;107331;107332;107333;107334;107335;107336;107337 130117;130118;130119;130120;130121;130122;130123;130124;130125;130126;130127;130128;130129;130130;130131;130132;130133;130134;130135;130136;130137;130138;130139;130140;130141;130142;130143;130144;130145 130138 29 VLLGETGK Unmodified 815.47527 0.4752686 1348 P62280 RPS11 40S ribosomal protein S11 yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 46.816 46.953 2 0.0020138 13410 20211116_3433_TMUAki_TMT10x_P_F5 119.29 61.827 16398000 27673000 118680 27235000 21106000 22863000 18101000 23720000 27254000 19693000 24000000 15269000 25821000 1520300 27750000 20168000 23580000 18801000 23953000 27211000 19399000 23252000 4 4 3 4 4 4 4 4 4 4 4 6685300 11351000 20717 10369000 11560000 14343000 7886600 9926500 11147000 8126500 8973000 6224700 10588000 626100 10706000 10992000 14268000 8292700 10262000 11121000 8010900 8723200 2 2 1 2 2 2 2 2 2 2 2 9713000 16323000 97963 16866000 9546300 8519900 10215000 13794000 16107000 11567000 15027000 9044500 15233000 894240 17043000 9176200 9312900 10509000 13692000 16090000 11388000 14529000 2 2 2 2 2 2 2 2 2 2 2 947770000 331460000 616300000 20699 1348 19029 107338;107339;107340;107341 130146;130147;130148;130149;130150 130146 5 VLLGETGKEK Unmodified 1072.6128 0.61282471 1348 P62280 RPS11 40S ribosomal protein S11 yes yes 0 0 0 1 By MS/MS 7 0 1 1 40.317 40.95 3 0.0076921 12125 20211116_3446_TMUAki_TMT10x_S_F7 66.262 21.126 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20700 1348 19030 107342 130151 130151 1 VLLGLSEPIFQLPR Unmodified 1580.929 0.92901389 2142 Q8IWA4 MFN1 Mitofusin-1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 80.269 80.246 2 6.9005E-06 27214 20211116_3442_TMUAki_TMT10x_S_F4 106.16 61.519 1750000 2677000 0 2966700 2352400 1819800 2325000 1192400 1412400 1541800 2149900 1629200 2499000 118430 2988900 2252600 1910500 2331500 1254500 1503000 1491400 2051100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1750000 2677000 0 2966700 2352400 1819800 2325000 1192400 1412400 1541800 2149900 1629200 2499000 118430 2988900 2252600 1910500 2331500 1254500 1503000 1491400 2051100 1 1 0 1 1 1 1 1 1 1 1 594070000 0 594070000 20701 2142 19031 107343 130152 130152 1 VLLGQDEPLIHVFAK Unmodified 1677.9454 0.94539224 2658 Q9BT73 PSMG3 Proteasome assembly chaperone 3 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 75.828 75.871 3 9.1521E-10 26526 20211116_3446_TMUAki_TMT10x_S_F7 129.38 99.32 14229000 23972000 25484 22377000 16553000 22192000 17044000 15244000 13497000 15919000 17814000 13249000 22362000 1194800 22938000 15883000 22463000 17153000 15870000 14039000 15520000 17051000 4 4 1 4 4 4 4 4 4 4 4 6590200 11447000 0 10738000 7352500 13878000 8128600 7209300 6487600 7562600 8427400 6135800 10678000 525670 11052000 7067400 13794000 8153900 7677000 6740700 7371500 8069500 2 2 0 2 2 2 2 2 2 2 2 7639000 12525000 25484 11639000 9200000 8314200 8915200 8034400 7009300 8356700 9386300 7112800 11684000 669130 11886000 8815100 8668800 8998900 8192600 7298500 8148300 8981000 2 2 1 2 2 2 2 2 2 2 2 2851300000 1592400000 1258900000 20702 2658 19032 107344;107345;107346;107347 130153;130154;130155;130156 130155 4 VLLGSVSGLAGGFVGTPADLVNVR Unmodified 2297.2743 0.27433095 3095 Q9UBX3;Q9UBX3-2 SLC25A10 Mitochondrial dicarboxylate carrier yes no 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 2 3 80.277 80.261 2;3 4.0086E-48 27183 20211116_3442_TMUAki_TMT10x_S_F4 202.22 184.11 4139800 7194500 21160 7144000 5114000 5435500 5189600 3646900 3681800 4078600 4926700 3854600 6713000 363520 7266000 4905900 5602600 5213400 3811100 3855700 3965500 4714100 3 3 2 3 3 3 3 3 3 3 3 1494500 2367000 7328.1 2343700 1510400 2478000 1785400 1282500 1319200 1435100 1573100 1391500 2208500 130950 2394600 1455600 2489300 1782200 1368800 1371500 1395300 1509600 1 1 1 1 1 1 1 1 1 1 1 2645300 4827500 13832 4800300 3603600 2957500 3404200 2364400 2362600 2643500 3353600 2463100 4504500 232570 4871400 3450300 3113300 3431200 2442200 2484200 2570300 3204400 2 2 1 2 2 2 2 2 2 2 2 5195400000 2073400000 3122000000 20703 3095 19033 107348;107349;107350;107351;107352 130157;130158;130159;130160 130158 4 VLLGVGDPK Unmodified 896.53312 0.53311783 103 O00567 NOP56 Nucleolar protein 56 yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 54.848 55.152 2 0.00038113 15550 20211116_3434_TMUAki_TMT10x_P_F6 90.37 44.019 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20704 103 19034 107353;107354 130161;130162 130161 2 VLLHMLSHPLPR Unmodified 1411.8122 0.81221 2117 Q86VV8;Q86VV8-4;Q86VV8-3 RTTN Rotatin yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 44.678 44.646 3 0.11101 13794 20211116_3430_TMUAki_TMT10x_P_F3 24.696 9.7103 13661000 21217000 54483 22586000 14637000 13180000 13305000 16793000 18575000 14714000 19106000 12719000 19802000 1118900 22804000 13999000 14088000 13729000 16829000 18685000 14456000 18415000 5 5 3 5 5 5 5 5 5 5 5 1676200 2464700 14075 2952300 3821100 3849100 2157600 2101600 2305200 1890400 2625600 1560800 2301700 182130 2990800 3622900 3826600 2280100 2218700 2350000 1854900 2522900 1 1 1 1 1 1 1 1 1 1 1 11984000 18752000 40407 19634000 10815000 9331000 11148000 14691000 16270000 12824000 16481000 11158000 17501000 936800 19813000 10376000 10262000 11449000 14611000 16335000 12601000 15892000 4 4 2 4 4 4 4 4 4 4 4 339420000 90172000 249250000 20705 2117 19035 107355;107356;107357 130163 130163 1 VLLLPPDVSALATQAEIESIVKPK Unmodified 2530.4622 0.4621913 2903 Q9NQC3;Q9NQC3-4;Q9NQC3-6 RTN4 Reticulon-4 yes no 0 0 0 1 By matching By MS/MS 1.5 0.5 1 1 1 1 80.619 80.61 4 2.1011E-07 26699 20211116_3440_TMUAki_TMT10x_S_F2 88.755 85.467 2956900 5318600 142650 5365700 4261900 3475000 4312300 2453100 2529700 2559300 3680000 2754200 4963000 396370 5442300 4096400 3633700 4316300 2548900 2692300 2495100 3514400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2956900 5318600 142650 5365700 4261900 3475000 4312300 2453100 2529700 2559300 3680000 2754200 4963000 396370 5442300 4096400 3633700 4316300 2548900 2692300 2495100 3514400 1 1 1 1 1 1 1 1 1 1 1 1149400000 343580000 805840000 20706 2903 19036 107358;107359 130164 130164 1 VLLLSSPGLEELYR Unmodified 1587.8872 0.88720866 2181 Q8N163;Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.667 1 4 4 5 4 78.628 78.642 2;3 4.3208E-51 25846 20211116_3436_TMUAki_TMT10x_P_F8 289.22 234.82 36993000 63058000 347200 55479000 42098000 55669000 46882000 41230000 38457000 41744000 45426000 34446000 58811000 3345800 57136000 40499000 56375000 47044000 42664000 39740000 40748000 43605000 7 7 4 7 7 7 7 7 7 7 7 18986000 30505000 200090 28229000 18155000 34606000 22268000 20123000 18849000 20731000 22912000 17679000 28456000 1677500 29055000 17519000 34535000 22267000 21209000 19470000 20222000 21976000 4 4 3 4 4 4 4 4 4 4 4 18008000 32553000 147110 27250000 23943000 21063000 24614000 21107000 19608000 21012000 22514000 16768000 30355000 1668300 28082000 22981000 21840000 24777000 21456000 20270000 20525000 21629000 3 3 1 3 3 3 3 3 3 3 3 11316000000 6521500000 4794200000 20707 2181 19037 107360;107361;107362;107363;107364;107365;107366;107367;107368 130165;130166;130167;130168;130169;130170;130171 130167 7 VLLPEYGGTK Unmodified 1075.5914 0.59136099 1316 P61604 HSPE1 10 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 6.36 1.23 1 2 2 4 2 6 5 55.623 55.919 2;3 1.7136E-08 16197 20211116_3445_TMUAki_TMT10x_S_F6 171.56 128.32 81865000 121640000 695600 159650000 128210000 116600000 84642000 107590000 118040000 91377000 114650000 76227000 113640000 7865600 159540000 121870000 121240000 89168000 109360000 118500000 89911000 110700000 14 14 10 14 14 14 14 14 14 14 14 38426000 54191000 284710 69028000 91635000 84551000 51208000 46797000 51601000 40250000 49650000 35779000 50621000 4068700 69604000 86857000 84329000 54069000 49290000 52409000 39580000 47956000 7 7 6 7 7 7 7 7 7 7 7 43439000 67445000 410880 90619000 36575000 32048000 33434000 60788000 66439000 51126000 65001000 40448000 63020000 3797000 89933000 35010000 36907000 35100000 60066000 66095000 50330000 62748000 7 7 4 7 7 7 7 7 7 7 7 20474000000 11623000000 8850700000 20708 1316 19038 107369;107370;107371;107372;107373;107374;107375;107376;107377;107378;107379 130172;130173;130174;130175;130176;130177;130178;130179;130180;130181;130182;130183;130184;130185 130182 14 VLLPFTR Unmodified 844.51707 0.51707383 2286 Q8TEM1;Q8TEM1-2 NUP210 Nuclear pore membrane glycoprotein 210 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 61.789 61.606 2 0.0063864 21919 20211116_3441_TMUAki_TMT10x_S_F3 107.22 102.37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20709 2286 19039 107380;107381;107382;107383 130186;130187;130188;130189 130188 4 VLLSALER Unmodified 899.54402 0.54401687 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 59.165 59.429 2 0.0012148 17447 20211116_3447_TMUAki_TMT10x_S_F8 126.04 76.386 14808000 25794000 0 21573000 21657000 22710000 9854300 19355000 12354000 14877000 20024000 13785000 24052000 979600 21834000 20446000 22990000 10192000 19155000 12475000 14714000 19079000 4 4 0 3 4 4 3 3 3 4 4 2850600 4624000 0 0 9534300 10862000 0 0 0 356850 7187300 2652700 4297400 142120 0 8890000 10151000 0 0 0 333820 6710800 1 1 0 0 1 1 0 0 0 1 1 11958000 21170000 0 21573000 12122000 11848000 9854300 19355000 12354000 14520000 12836000 11132000 19755000 837480 21834000 11556000 12839000 10192000 19155000 12475000 14380000 12368000 3 3 0 3 3 3 3 3 3 3 3 2716100000 1192900000 1523200000 20710 629 19040 107384;107385;107386;107387;107388;107389 130190;130191;130192;130193;130194 130194 5 VLLSEFRPSGELFAIK Unmodified 1805.0087 0.0087207779 1844 Q16512;Q16512-2 PKN1 Serine/threonine-protein kinase N1 yes no 0 0 0 1 By MS/MS 3 0 1 1 77.579 77.481 3 2.07E-05 28235 20211116_3441_TMUAki_TMT10x_S_F3 94.922 81.205 3845200 7079100 49401 6007800 5472300 4943200 4653500 2892800 2973800 3497800 4576100 3580600 6601500 387620 6188700 5229500 5055400 4711100 3062800 3155700 3391200 4364800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3845200 7079100 49401 6007800 5472300 4943200 4653500 2892800 2973800 3497800 4576100 3580600 6601500 387620 6188700 5229500 5055400 4711100 3062800 3155700 3391200 4364800 1 1 1 1 1 1 1 1 1 1 1 646730000 0 646730000 20711 1844 19041 107390 130195 130195 1 VLLSICSLLCDPNPDDPLVPEIAR Unmodified 2705.3768 0.37682347 1291 P61077;P61077-3;P61077-2;P62837;P62837-2 UBE2D3;UBE2D2 Ubiquitin-conjugating enzyme E2 D3;Ubiquitin-conjugating enzyme E2 D2 yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 82.52 82.528 3 2.571E-13 27700 20211116_3431_TMUAki_TMT10x_P_F4 121.47 108.91 415760 658860 16490 752670 353180 753410 484270 367380 369690 446990 613620 387230 615130 48961 761230 342940 758810 480820 395390 389760 433270 584390 1 1 1 1 1 1 1 1 1 1 1 415760 658860 16490 752670 353180 753410 484270 367380 369690 446990 613620 387230 615130 48961 761230 342940 758810 480820 395390 389760 433270 584390 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 135290000 135290000 0 20712 1291 19042 107391;107392;107393 130196;130197;130198 130197 3 VLLTTQGVDMISK Oxidation (M) 1419.7643 0.76431633 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 1 0 By MS/MS 7.25 0.433 3 1 4 66.653 66.736 3 0.0014302 30935 20211116_3446_TMUAki_TMT10x_S_F7 69.456 51.188 2302700 4007400 38436 3865700 2499100 2325000 2301900 3323200 3102500 2950400 3205900 2144300 3738800 224910 3930600 2393500 2486000 2370000 3317300 3124900 2896900 3089500 6 6 4 6 6 6 6 6 6 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2302700 4007400 38436 3865700 2499100 2325000 2301900 3323200 3102500 2950400 3205900 2144300 3738800 224910 3930600 2393500 2486000 2370000 3317300 3124900 2896900 3089500 6 6 4 6 6 6 6 6 6 6 6 63939000 0 63939000 20713 1695 19043 107394;107395;107396;107397 130199;130200;130201;130202;130203;130204;130205 130202 2284 7 VLLVGLK Unmodified 740.51601 0.5160112 3076 Q9UBE0;Q9UBE0-3;Q9UBE0-2 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 65.428 65.2 2 0.0063576 22323 20211116_3430_TMUAki_TMT10x_P_F3 106.84 72.132 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20714 3076 19044 107398;107399 130206;130207 130206 2 VLMATNRPDTLDPALMRPGR Oxidation (M) 2239.1565 0.15654078 945 P35998;P35998-2 PSMC2 26S protease regulatory subunit 7 yes no 0 0 1 2 By MS/MS By MS/MS 2 0 3 2 1 46.391 46.188 4 0.0032772 13875 20211116_3429_TMUAki_TMT10x_P_F2 58.073 50.664 6392900 10505000 125630 11338000 9385200 10301000 7593300 6782500 6431100 6354700 8349100 5953300 9804900 681860 11492000 8961100 10479000 7760000 7060800 6661500 6224000 7994700 4 4 3 4 4 4 4 4 4 4 4 4217500 6673600 78861 7160000 7425800 8600000 5757000 4420600 4182100 4059400 5477400 3927400 6229000 460950 7291500 7082500 8578300 5878100 4694700 4369400 3979500 5243700 2 2 1 2 2 2 2 2 2 2 2 2175400 3830900 46766 4177800 1959500 1701200 1836300 2361900 2249100 2295300 2871800 2025900 3575900 220920 4200500 1878600 1900700 1881800 2366100 2292100 2244400 2751000 2 2 2 2 2 2 2 2 2 2 2 773690000 612310000 161380000 20715 945 19045 107400;107401;107402 130208;130209;130210;130211 130208 1206;1207 4 VLMATNRPDTLDPALMRPGR 2 Oxidation (M) 2255.1515 0.1514554 945 P35998;P35998-2 PSMC2 26S protease regulatory subunit 7 yes no 0 0 2 2 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 41.116 41.081 4 0.019773 12405 20211116_3439_TMUAki_TMT10x_S_F1 43.115 30.323 2851300 4590000 36423 5185500 6294800 6791000 3863900 5424400 5294600 4470000 4732200 2655000 4285200 307920 5272000 5976200 6788400 4090700 5555600 5303800 4404900 4582400 4 4 2 4 4 4 4 4 4 4 4 2207600 3440300 35534 3915600 5646600 6134200 3305600 4151100 4042000 3407400 3663100 2055700 3212000 254630 3994200 5356900 6067700 3498300 4298400 4066400 3358500 3545400 2 2 1 2 2 2 2 2 2 2 2 643640 1149700 888.68 1269900 648240 656750 558260 1273300 1252600 1062600 1069100 599290 1073200 53284 1277800 619290 720730 592470 1257200 1237400 1046500 1037000 2 2 1 2 2 2 2 2 2 2 2 648550000 358520000 290030000 20716 945 19045 107403;107404;107405 130212 130212 1206;1207 1 VLMATNRPDTLDPALMRPGR Unmodified 2223.1616 0.16162616 945 P35998;P35998-2 PSMC2 26S protease regulatory subunit 7 yes no 0 0 0 2 By MS/MS 3 0 1 1 52.456 52.089 4 1.4663E-06 17981 20211116_3441_TMUAki_TMT10x_S_F3 92.897 75.408 3177900 5884800 43065 6640700 3177100 3151400 3421000 3881000 4208700 3633700 5010700 2959200 5494000 300830 6669000 3054900 3442000 3481700 3901700 4275600 3559000 4808800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3177900 5884800 43065 6640700 3177100 3151400 3421000 3881000 4208700 3633700 5010700 2959200 5494000 300830 6669000 3054900 3442000 3481700 3901700 4275600 3559000 4808800 2 2 1 2 2 2 2 2 2 2 2 118470000 0 118470000 20717 945 19045 107406 130213;130214 130213 2 VLMTQQPRPVL Unmodified 1280.7275 0.72747731 2891 Q9NPE3 NOP10 H/ACA ribonucleoprotein complex subunit 3 yes yes 0 0 0 1 By MS/MS 2 0 1 1 54.802 54.553 2 0.0090131 17445 20211116_3429_TMUAki_TMT10x_P_F2 72.275 45.677 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20718 2891 19046 107407 130215 130215 1 VLMTQQPRPVL Oxidation (M) 1296.7224 0.72239194 2891 Q9NPE3 NOP10 H/ACA ribonucleoprotein complex subunit 3 yes yes 0 0 1 1 By MS/MS By MS/MS 8 0 2 1 1 46.93 47.049 2 0.00016603 12418 20211116_3447_TMUAki_TMT10x_S_F8 88.177 74.91 758580 1475800 8900.8 1333400 1720000 2468500 1098600 1543200 1630800 1224700 1247200 706380 1376600 84653 1387300 1634200 2424000 1163300 1606200 1622100 1209200 1215000 1 1 1 1 1 1 1 1 1 1 1 758580 1475800 8900.8 1333400 1720000 2468500 1098600 1543200 1630800 1224700 1247200 706380 1376600 84653 1387300 1634200 2424000 1163300 1606200 1622100 1209200 1215000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 198820000 198820000 0 20719 2891 19046 107408;107409 130216;130217 130217 3008 2 VLNEAVGALMYHTITLTR Oxidation (M) 2017.0666 0.066646362 1624 Q13363;Q13363-2 CTBP1 C-terminal-binding protein 1 yes no 0 0 1 0 By MS/MS 2 0 1 1 70.605 70.322 3 0.007539 23887 20211116_3429_TMUAki_TMT10x_P_F2 52.185 35.246 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20720 1624 19047 107410 130218 130218 2175 1 VLNGPEGDGVPEAVVTLNNQIK Unmodified 2262.1856 0.18557552 1422 Q5JPE7;Q15155;P69849;Q5JPE7-2;Q5JPE7-3 NOMO2;NOMO1;NOMO3 Nodal modulator 2;Nodal modulator 1;Nodal modulator 3 yes no 0 0 0 0 By MS/MS By MS/MS 4.75 0.433 1 3 3 1 74.188 74.216 3 1.1526E-35 23461 20211116_3444_TMUAki_TMT10x_S_F5 193.72 171.71 1917400 2740200 0 2727900 2248800 2150000 2326400 1733100 1790500 1696800 2137400 1785200 2556800 143930 2775200 2156900 2216600 2339100 1782000 1857300 1658600 2051100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1917400 2740200 0 2727900 2248800 2150000 2326400 1733100 1790500 1696800 2137400 1785200 2556800 143930 2775200 2156900 2216600 2339100 1782000 1857300 1658600 2051100 1 1 0 1 1 1 1 1 1 1 1 1086200000 811830000 274410000 20721 1422 19048 107411;107412;107413;107414 130219;130220 130220 2 VLNNMEIGTSLFDEEGAK Oxidation (M) 1981.9303 0.93027204 473 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 1 0 By MS/MS By MS/MS 3.19 1.3 3 4 10 4 4 1 17 9 72.841 72.716 2;3 1.1365E-30 22615 20211116_3433_TMUAki_TMT10x_P_F5 184.21 170.53 106860000 184840000 693570 175580000 125730000 199990000 126270000 140860000 153320000 148260000 144890000 99495000 172440000 8137400 180140000 120560000 200910000 128890000 146420000 154500000 144490000 140030000 34 34 15 34 34 34 34 34 34 34 34 72272000 120070000 409470 118880000 85660000 160310000 91630000 89071000 98027000 94163000 94091000 67290000 112040000 5125300 121980000 82264000 159150000 92831000 94309000 99306000 91755000 90888000 24 24 9 24 24 24 24 24 24 24 24 34587000 64764000 284090 56708000 40074000 39688000 34637000 51790000 55295000 54094000 50798000 32205000 60402000 3012200 58166000 38292000 41753000 36058000 52115000 55190000 52736000 49143000 10 10 6 10 10 10 10 10 10 10 10 45369000000 25760000000 19609000000 20722 473 19049 107415;107416;107417;107418;107419;107420;107421;107422;107423;107424;107425;107426;107427;107428;107429;107430;107431;107432;107433;107434;107435;107436;107437;107438;107439;107440 130221;130222;130223;130224;130225;130226;130227;130228;130229;130230;130231;130232;130233;130234;130235;130236;130237;130238;130239;130240;130241;130242;130243;130244;130245;130246;130247;130248;130249;130250;130251;130252;130253;130254;130255;130256;130257;130258;130259 130247 370 39 VLNNMEIGTSLFDEEGAK Unmodified 1965.9354 0.93535742 473 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.52 1.33 1 4 6 5 3 2 11 10 77.609 77.572 2;3 8.964E-58 27262 20211116_3430_TMUAki_TMT10x_P_F3 249.66 215.79 100940000 163950000 925910 167190000 108160000 111250000 119600000 52679000 45738000 67015000 104560000 93988000 153000000 9048900 169500000 104030000 115470000 118430000 56945000 51850000 64859000 99040000 17 17 10 17 17 17 17 17 17 17 17 46299000 72975000 442570 73675000 44862000 63453000 54449000 22126000 19188000 29438000 44239000 43111000 68097000 4085400 74958000 43274000 64343000 53638000 24800000 21952000 28449000 41900000 8 8 3 8 8 8 8 8 8 8 8 54639000 90979000 483340 93520000 63294000 47797000 65148000 30553000 26550000 37577000 60316000 50877000 84902000 4963500 94543000 60756000 51125000 64790000 32145000 29898000 36410000 57139000 9 9 7 9 9 9 9 9 9 9 9 20505000000 9233500000 11272000000 20723 473 19049 107441;107442;107443;107444;107445;107446;107447;107448;107449;107450;107451;107452;107453;107454;107455;107456;107457;107458;107459;107460;107461 130260;130261;130262;130263;130264;130265;130266;130267;130268;130269;130270;130271;130272;130273;130274;130275;130276;130277;130278;130279;130280;130281;130282 130264 23 VLNPPGGK Unmodified 780.44939 0.4493882 2834 Q9H910;Q9H910-3;Q9H910-2 HN1L Hematological and neurological expressed 1-like protein yes no 0 0 0 0 By MS/MS 7 0 1 1 38.141 38.579 2 0.0546 10784 20211116_3435_TMUAki_TMT10x_P_F7 63.306 30.836 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20724 2834 19050 107462 130283 130283 1 VLNPQKQQLRMR Unmodified 1509.8562 0.85620008 241 O43747;O43747-2 AP1G1 AP-1 complex subunit gamma-1 yes no 0 0 0 2 By MS/MS 6 0 1 1 51.447 51.548 3 0.07463 14055 20211116_3434_TMUAki_TMT10x_P_F6 48.004 12.267 8569400 14702000 66223 15605000 17114000 19563000 10817000 9259500 11540000 10699000 11778000 7979000 13722000 844050 15915000 16253000 19454000 11324000 9977500 11717000 10390000 11354000 2 2 1 2 2 2 2 2 2 2 2 8569400 14702000 66223 15605000 17114000 19563000 10817000 9259500 11540000 10699000 11778000 7979000 13722000 844050 15915000 16253000 19454000 11324000 9977500 11717000 10390000 11354000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 895060000 895060000 0 20725 241 19051 107463 130284;130285 130284 2 VLNQQLTNHIRDTLPGLR Unmodified 2087.16 0.1599699 1518 Q05193;Q05193-5;Q05193-3;Q05193-2 DNM1 Dynamin-1 yes no 0 0 0 1 By MS/MS 4 0 1 1 57.212 57.147 4 5.7071E-05 17789 20211116_3442_TMUAki_TMT10x_S_F4 80.638 60.542 2414500 4188400 2957.4 4538600 2516800 2290300 2170900 3234000 3063500 2766500 3482100 2248100 3909600 204370 4571700 2404700 2493100 2247700 3226500 3092400 2721200 3346100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2414500 4188400 2957.4 4538600 2516800 2290300 2170900 3234000 3063500 2766500 3482100 2248100 3909600 204370 4571700 2404700 2493100 2247700 3226500 3092400 2721200 3346100 1 1 1 1 1 1 1 1 1 1 1 735860000 0 735860000 20726 1518 19052 107464 130286 130286 1 VLNSYWVGEDSTYK Unmodified 1659.7781 0.77805214 1308 P61313 RPL15 60S ribosomal protein L15 yes yes 0 0 0 0 By MS/MS By MS/MS 6.33 0.745 1 2 3 4 2 66.371 66.63 2;3 5.5661E-37 22651 20211116_3446_TMUAki_TMT10x_S_F7 240.65 224.4 70456000 123390000 108550 138630000 108820000 131380000 89307000 67933000 58718000 71921000 88273000 65598000 115200000 5919100 140240000 103820000 132870000 90661000 72391000 62123000 70077000 84239000 10 10 5 10 10 10 10 10 10 10 10 51481000 89307000 76691 98034000 92797000 121960000 75051000 60414000 52887000 62708000 67527000 47931000 83365000 4449300 99752000 88506000 121390000 76370000 64599000 55293000 61150000 64688000 6 6 3 6 6 6 6 6 6 6 6 18975000 34086000 31859 40593000 16020000 9424900 14256000 7519700 5830500 9212500 20746000 17667000 31830000 1469900 40485000 15312000 11481000 14292000 7792400 6829400 8927700 19551000 4 4 2 4 4 4 4 4 4 4 4 4527000000 3107900000 1419100000 20727 1308 19053 107465;107466;107467;107468;107469;107470 130287;130288;130289;130290;130291;130292;130293;130294;130295;130296 130295 10 VLNTNIDGR Unmodified 1000.5302 0.53015772 1345 P62269 RPS18 40S ribosomal protein S18 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 38.053 38.063 2 1.1337E-05 9903 20211116_3431_TMUAki_TMT10x_P_F4 159.1 109.66 5845700 10095000 67680 10498000 11192000 10946000 6899500 7333200 9066200 6554400 8935500 5443300 9421100 610010 10688000 10627000 11042000 7290000 7614900 9123900 6433500 8623800 7 7 5 7 7 7 7 7 7 7 7 3971200 6843500 32115 7034500 9288000 9275400 5082800 4956400 6043500 4528000 5859100 3697700 6386400 421040 7196300 8801100 9213900 5405300 5244500 6099700 4440000 5657700 4 4 2 4 4 4 4 4 4 4 4 1874500 3251400 35565 3463300 1904300 1670500 1816700 2376800 3022700 2026400 3076500 1745600 3034700 188970 3491400 1825900 1828200 1884700 2370400 3024200 1993500 2966100 3 3 3 3 3 3 3 3 3 3 3 410990000 232340000 178650000 20728 1345 19054 107471;107472;107473;107474;107475;107476 130297;130298;130299;130300;130301;130302;130303 130299 7 VLPAQATEYAFAFIQVPQDDDARTDAVDSVVR Unmodified 3506.7318 0.73177723 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 6 0.816 1 1 1 2 1 79.666 79.675 3;4 7.5803E-21 25575 20211116_3434_TMUAki_TMT10x_P_F6 135.39 126.4 7551600 12476000 75182 12650000 7235600 10974000 7939400 4999500 3942400 5276400 7296800 7030700 11642000 552380 12868000 6951000 11149000 7892700 5393000 4304600 5141800 6935100 4 4 2 4 4 4 4 4 4 4 4 6658500 10902000 44283 11196000 6047500 9968900 6561000 4107400 3032000 4347600 6183300 6199000 10174000 447830 11382000 5805300 10100000 6519000 4479200 3350700 4236200 5867300 2 2 1 2 2 2 2 2 2 2 2 893090 1574600 30899 1454000 1188100 1005500 1378400 892060 910430 928750 1113500 831770 1468800 104540 1485100 1145700 1049500 1373700 913810 953890 905550 1067800 2 2 1 2 2 2 2 2 2 2 2 2507800000 1757100000 750670000 20729 2048 19055 107477;107478;107479 130304;130305;130306;130307 130304 4 VLPAVGISYVVYENMK Oxidation (M) 1796.9383 0.93825795 1983 Q6NUK1;Q6NUK1-2 SLC25A24 Calcium-binding mitochondrial carrier protein SCaMC-1 yes no 0 0 1 0 By MS/MS 1 0 1 1 77.662 77.61 3 0.00019698 27262 20211116_3439_TMUAki_TMT10x_S_F1 77.754 64.009 2494100 3957500 78172 3506200 2997600 3388700 3006000 2808400 2869300 3178400 3159300 2322800 3691100 286680 3607000 2879100 3446400 3044500 2895800 2935200 3089000 3038700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2494100 3957500 78172 3506200 2997600 3388700 3006000 2808400 2869300 3178400 3159300 2322800 3691100 286680 3607000 2879100 3446400 3044500 2895800 2935200 3089000 3038700 1 1 1 1 1 1 1 1 1 1 1 333120000 0 333120000 20730 1983 19056 107480 130308 130308 2538 1 VLPDPEVISDLVFLK Unmodified 1682.9495 0.94947456 2369 Q92859;Q92859-3;Q92859-2;Q92859-4 NEO1 Neogenin yes no 0 0 0 0 By matching By MS/MS 6 0 2 1 1 82.427 82.429 3 0.0033893 27123 20211116_3445_TMUAki_TMT10x_S_F6 60.657 45.685 270760 490030 0 410400 377880 253020 368590 271190 268080 267780 405150 252030 456960 14753 421940 361500 267880 371250 274710 281990 261670 386590 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 270760 490030 0 410400 377880 253020 368590 271190 268080 267780 405150 252030 456960 14753 421940 361500 267880 371250 274710 281990 261670 386590 1 1 0 1 1 1 1 1 1 1 1 51319000 13829000 37490000 20731 2369 19057 107481;107482 130309 130309 1 VLPFFERPDFQLFTGNK Unmodified 2054.0625 0.062547262 2484 Q96HE7 ERO1L ERO1-like protein alpha yes yes 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 79.032 78.996 3 6.1538E-08 26297 20211116_3431_TMUAki_TMT10x_P_F4 115.8 82.869 15498000 22863000 69466 24851000 13226000 24861000 16714000 12552000 13396000 14695000 16418000 14430000 21341000 1244900 25212000 12769000 25050000 16669000 13447000 13881000 14264000 15744000 3 3 2 3 3 3 3 3 3 3 3 15498000 22863000 69466 24851000 13226000 24861000 16714000 12552000 13396000 14695000 16418000 14430000 21341000 1244900 25212000 12769000 25050000 16669000 13447000 13881000 14264000 15744000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1830000000 1830000000 0 20732 2484 19058 107483;107484;107485 130310;130311;130312;130313 130311 4 VLPGVDALSNI Unmodified 1096.6128 0.61282471 473 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.04 1.58 2 2 9 12 23 12 13 3 44 32 64.845 64.863 1;2 1.4579E-11 28158 20211116_3430_TMUAki_TMT10x_P_F3 176.66 150.28 84834000 142270000 991380 136970000 101790000 134670000 110940000 85339000 82004000 96290000 109300000 78992000 132730000 6066800 140080000 97846000 136230000 111160000 89584000 85660000 93591000 104590000 59 59 34 59 59 59 59 59 59 59 59 49364000 83994000 519930 78589000 52325000 94108000 63822000 48952000 46515000 56614000 64070000 45965000 78355000 2995600 80787000 50476000 93899000 63601000 52279000 48701000 54976000 61262000 39 39 22 39 39 39 39 39 39 39 39 35470000 58275000 471440 58386000 49460000 40561000 47119000 36388000 35489000 39676000 45232000 33027000 54377000 3071200 59289000 47370000 42327000 47557000 37306000 36959000 38614000 43332000 20 20 12 20 20 20 20 20 20 20 20 75010000000 38962000000 36047000000 20733 473 19059 107486;107487;107488;107489;107490;107491;107492;107493;107494;107495;107496;107497;107498;107499;107500;107501;107502;107503;107504;107505;107506;107507;107508;107509;107510;107511;107512;107513;107514;107515;107516;107517;107518;107519;107520;107521;107522;107523;107524;107525;107526;107527;107528;107529;107530;107531;107532;107533;107534;107535;107536;107537;107538;107539;107540;107541;107542;107543;107544;107545;107546;107547;107548;107549;107550;107551;107552;107553;107554;107555;107556;107557;107558;107559;107560;107561 130314;130315;130316;130317;130318;130319;130320;130321;130322;130323;130324;130325;130326;130327;130328;130329;130330;130331;130332;130333;130334;130335;130336;130337;130338;130339;130340;130341;130342;130343;130344;130345;130346;130347;130348;130349;130350;130351;130352;130353;130354;130355;130356;130357;130358;130359;130360;130361;130362;130363;130364;130365;130366;130367;130368;130369;130370;130371;130372;130373;130374;130375;130376;130377;130378;130379;130380;130381;130382;130383;130384;130385;130386;130387 130317 74 VLPIEQSLSTLYQSVK Unmodified 1803.9982 0.99821567 219 O43490;O43490-5;O43490-3;O43490-4;O43490-6;O43490-7;O43490-2 PROM1 Prominin-1 yes no 0 0 0 0 By MS/MS 2 0 1 1 80.283 80.264 3 0.00014058 26576 20211116_3440_TMUAki_TMT10x_S_F2 77.726 56.773 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20734 219 19060 107562 130388 130388 1 VLPLEALVTDAGEVTEAGK Unmodified 1911.0201 0.020073325 2350 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 80.672 80.649 3 1.9342E-42 28007 20211116_3429_TMUAki_TMT10x_P_F2 218.28 202.16 16407000 26390000 77267 27529000 17425000 19939000 18881000 11002000 12324000 13781000 18651000 15276000 24629000 1359600 27890000 16743000 20580000 18872000 11720000 13049000 13344000 17796000 7 7 4 7 7 7 7 7 7 7 7 7762100 11631000 61820 12608000 6938500 11316000 7452700 4801800 5541200 6217600 8703000 7227700 10857000 689610 12774000 6669600 11461000 7473500 5253300 5833100 6014100 8297600 3 3 3 3 3 3 3 3 3 3 3 8644600 14759000 15448 14921000 10486000 8623200 11428000 6200400 6782700 7563100 9948200 8048400 13772000 670020 15116000 10074000 9118800 11399000 6467200 7215900 7330400 9498600 4 4 1 4 4 4 4 4 4 4 4 5521400000 2946300000 2575100000 20735 2350 19061 107563;107564;107565;107566;107567;107568 130389;130390;130391;130392;130393;130394;130395 130389 7 VLPPPAGYVPIR Unmodified 1277.7496 0.74959297 345 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 1.4 0.49 3 2 2 3 60.684 60.431 2 2.1161E-15 19695 20211116_3429_TMUAki_TMT10x_P_F2 194.44 152.47 11026000 19724000 156950 19887000 14807000 19523000 13303000 13950000 13608000 13913000 15996000 10267000 18405000 1069600 20271000 14167000 19786000 13582000 14463000 13915000 13589000 15357000 4 4 2 4 4 4 4 4 4 4 4 6394300 11002000 114870 10894000 8963600 14454000 8513200 7949700 7690100 8014100 8961500 5954400 10266000 655800 11174000 8589300 14359000 8633400 8412900 7904500 7824300 8605500 2 2 1 2 2 2 2 2 2 2 2 4631700 8721300 42082 8993100 5843500 5068600 4790200 6000000 5917900 5898700 7034600 4312700 8138900 413780 9096600 5577400 5426500 4948900 6050300 6010700 5765200 6751400 2 2 1 2 2 2 2 2 2 2 2 2172100000 1200200000 971930000 20736 345 19062 107569;107570;107571;107572;107573 130396;130397;130398;130399;130400;130401;130402 130398 7 VLPQLISTITASVQNPALR Unmodified 2020.1681 0.16807497 2350 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 81.629 81.64 3 1.8109E-31 28902 20211116_3446_TMUAki_TMT10x_S_F7 182.49 172.29 1761800 2702100 42905 2933100 1828400 2439400 2368900 1481200 1564600 1802600 2249200 1640600 2522200 177870 2968500 1768700 2494000 2349700 1564000 1651200 1747300 2148500 4 4 3 4 4 4 4 4 4 4 4 571980 834210 19628 979800 552640 1099800 682100 524830 515750 554920 783310 532710 778950 65442 991070 534340 1100000 679970 563530 541460 540730 747350 1 1 1 1 1 1 1 1 1 1 1 1189800 1867900 23277 1953300 1275800 1339600 1686800 956380 1048900 1247700 1465800 1107900 1743300 112430 1977500 1234400 1394000 1669800 1000400 1109800 1206500 1401100 3 3 2 3 3 3 3 3 3 3 3 1401400000 455810000 945580000 20737 2350 19063 107574;107575;107576;107577 130403;130404;130405;130406 130406 4 VLPSFWIPSLTPEAK Unmodified 1683.9236 0.92359417 3259 Q9Y314 NOSIP Nitric oxide synthase-interacting protein yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 80.509 80.459 3 0.00053509 29418 20211116_3441_TMUAki_TMT10x_S_F3 73.887 60.686 7187700 10832000 107090 11467000 8226100 8053300 8964700 3601600 3128100 4688300 7651200 6692000 10109000 550460 11602000 7902300 8314700 8874000 3919100 3598200 4534000 7240800 2 2 1 2 2 2 2 2 2 2 2 2841400 4138800 107090 3901200 2817000 4209500 3229300 1776100 1616300 2242800 2989700 2646400 3861000 335030 4001200 2717900 4214600 3204100 1942600 1763600 2171200 2841500 1 1 1 1 1 1 1 1 1 1 1 4346300 6692900 0 7565700 5409100 3843800 5735400 1825500 1511800 2445400 4661600 4045600 6248500 215430 7601000 5184300 4100000 5669900 1976500 1834600 2362800 4399300 1 1 0 1 1 1 1 1 1 1 1 1271400000 717970000 553470000 20738 3259 19064 107578;107579 130407;130408 130408 2 VLPSITTEILK Unmodified 1212.7329 0.73293985 924 P35232;P35232-2 PHB Prohibitin yes no 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 75.573 75.6 2;3 1.7068E-27 24031 20211116_3434_TMUAki_TMT10x_P_F6 231.23 176.68 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20739 924 19065 107580;107581;107582;107583;107584 130409;130410;130411;130412;130413 130409 5 VLPSIVNEVLK Unmodified 1209.7333 0.7332742 2593 Q99623;Q99623-2 PHB2 Prohibitin-2 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 3 1 78.553 78.58 2;3 4.3039E-15 27644 20211116_3446_TMUAki_TMT10x_S_F7 175.86 98.187 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20740 2593 19066 107585;107586;107587;107588 130414;130415;130416;130417 130417 4 VLPTIPK Unmodified 766.49528 0.49527576 936 P35606;P35606-2 COPB2 Coatomer subunit beta' yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 54.227 54.079 2 0.029633 15665 20211116_3428_TMUAki_TMT10x_P_F1 80.18 32.273 8072100 13079000 7763.6 12986000 10736000 11786000 8932800 8756600 8853300 8848600 10669000 7515900 12204000 700750 13236000 10248000 12012000 9152800 9058700 9074600 8638200 10236000 2 2 1 2 2 2 2 2 2 2 2 4665500 7419800 7763.6 7473600 7495900 8698200 5577700 4839900 4996000 5166100 6144000 4344100 6923600 433680 7638800 7139700 8699000 5740000 5125400 5148800 5032000 5891300 1 1 1 1 1 1 1 1 1 1 1 3406600 5659400 0 5512200 3240000 3087400 3355100 3916700 3857200 3682500 4525300 3171700 5280200 267070 5597500 3108700 3313400 3412800 3933300 3925800 3606200 4344700 1 1 0 1 1 1 1 1 1 1 1 453140000 320030000 133100000 20741 936 19067 107589;107590 130418;130419 130418 2 VLQALEGLK Unmodified 969.58588 0.58588168 974 P39019 RPS19 40S ribosomal protein S19 yes yes 0 0 0 0 By MS/MS By MS/MS 7 1.07 1 1 2 3 5 2 73.366 73.42 2;3 6.1294E-06 25447 20211116_3446_TMUAki_TMT10x_S_F7 163.32 82.104 38685000 65205000 886820 69143000 62459000 66566000 48798000 50167000 51730000 44824000 54899000 36026000 60858000 4366700 70220000 59599000 67604000 50303000 51674000 52611000 43997000 52861000 5 5 5 5 5 5 5 5 5 5 5 24338000 39912000 678990 41192000 48131000 55168000 35944000 30422000 31796000 27019000 33616000 22666000 37247000 2983800 42142000 45885000 54783000 36969000 32078000 32593000 26528000 32371000 3 3 3 3 3 3 3 3 3 3 3 14347000 25293000 207830 27950000 14329000 11398000 12854000 19745000 19934000 17805000 21284000 13360000 23611000 1382900 28079000 13714000 12820000 13335000 19596000 20018000 17469000 20490000 2 2 2 2 2 2 2 2 2 2 2 5591800000 3192100000 2399700000 20742 974 19068 107591;107592;107593;107594;107595;107596;107597 130420;130421;130422;130423;130424;130425;130426 130425 7 VLQAQGSSDPEEESVLYSNR Unmodified 2207.0342 0.03421984 1829 Q15785 TOMM34 Mitochondrial import receptor subunit TOM34 yes yes 0 0 0 0 By MS/MS By MS/MS 1.71 0.7 3 3 1 4 3 53.296 53.084 2;3 6.1297E-65 16869 20211116_3429_TMUAki_TMT10x_P_F2 275.83 263.67 4580200 7600200 101200 8092200 4987600 5781800 4592800 6601900 6136700 5644800 6291600 4265200 7093600 458290 8186100 4777200 6051000 4727200 6642300 6181000 5552400 6064500 5 5 3 5 5 5 5 5 5 5 5 1180000 2087700 3890.3 2030900 1969900 2895200 1630300 1799500 1698800 1517600 1636400 1098600 1947800 100450 2088800 1879700 2871500 1673600 1876400 1723000 1493800 1580500 2 2 1 2 2 2 2 2 2 2 2 3400300 5512500 97305 6061300 3017700 2886500 2962500 4802400 4437900 4127100 4655200 3166600 5145800 357840 6097300 2897400 3179500 3053600 4765900 4458000 4058600 4484000 3 3 2 3 3 3 3 3 3 3 3 1596000000 1035200000 560830000 20743 1829 19069 107598;107599;107600;107601;107602;107603;107604 130427;130428;130429;130430;130431;130432;130433 130429 7 VLQATVVAVGSGSK Unmodified 1314.7507 0.75071518 1316 P61604 HSPE1 10 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 2.6 1.7 4 4 5 1 1 6 9 57.504 57.296 2;3 8.0919E-51 17221 20211116_3440_TMUAki_TMT10x_S_F2 282.89 213.47 205400000 320740000 739720 357670000 267920000 271510000 211340000 227910000 224140000 215860000 245600000 191230000 299420000 15328000 360990000 255350000 280930000 217730000 233570000 228220000 211320000 236250000 18 18 6 18 18 18 18 18 18 18 18 89272000 131610000 157140 142320000 138300000 164380000 95001000 92253000 97995000 89295000 103070000 83112000 122850000 6919500 144760000 131450000 164480000 98721000 97348000 99742000 87332000 99267000 7 7 2 7 7 7 7 7 7 7 7 116130000 189130000 582580 215360000 129610000 107130000 116340000 135660000 126140000 126570000 142530000 108120000 176580000 8408100 216230000 123900000 116450000 119010000 136220000 128480000 123990000 136990000 11 11 4 11 11 11 11 11 11 11 11 40328000000 21066000000 19262000000 20744 1316 19070 107605;107606;107607;107608;107609;107610;107611;107612;107613;107614;107615;107616;107617;107618;107619 130434;130435;130436;130437;130438;130439;130440;130441;130442;130443;130444;130445;130446;130447;130448;130449;130450;130451;130452 130446 19 VLQDMGLPTGAEGR Oxidation (M) 1458.7137 0.71367774 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 1 0 By MS/MS By MS/MS 3.09 0.793 3 4 4 6 5 45.304 45.2 2;3 5.3079E-09 13984 20211116_3430_TMUAki_TMT10x_P_F3 133.02 112.5 11662000 17989000 185810 22222000 22945000 22126000 13990000 17673000 21587000 13713000 18072000 10859000 16802000 1164200 22370000 21778000 22446000 14894000 18075000 21504000 13556000 17542000 12 12 10 12 12 12 12 12 12 12 12 6908300 11012000 139370 13329000 19047000 18573000 10283000 10474000 12931000 8440900 10808000 6433300 10284000 872240 13512000 18051000 18415000 10971000 10998000 12964000 8327600 10492000 8 8 7 8 8 8 8 8 8 8 8 4753800 6977000 46443 8893900 3898300 3553500 3706800 7198700 8655900 5272500 7264400 4425500 6517500 291980 8858000 3727200 4031300 3923200 7077500 8539900 5228800 7050800 4 4 3 4 4 4 4 4 4 4 4 2241500000 1274300000 967180000 20745 1576 19071 107620;107621;107622;107623;107624;107625;107626;107627;107628;107629;107630 130453;130454;130455;130456;130457;130458;130459;130460;130461;130462;130463;130464;130465;130466 130457 2136 14 VLQDMGLPTGAEGR Unmodified 1442.7188 0.71876312 1576 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 59.87 60.01 2 1.4753E-29 18462 20211116_3431_TMUAki_TMT10x_P_F4 203.93 162.9 7737100 12736000 189550 15800000 9972900 8984900 7610700 5700900 5341800 6184400 9808800 7205500 11895000 849430 15800000 9514600 9499800 7773100 5976500 5692200 6020100 9323900 3 3 3 3 3 3 3 3 3 3 3 2927100 4590400 21989 5450700 5243600 5395600 4041600 2073300 2002300 2131400 3650700 2725500 4286600 295610 5499000 4998900 5425400 4099300 2277400 2184700 2079300 3470700 1 1 1 1 1 1 1 1 1 1 1 4810100 8145200 167560 10349000 4729300 3589300 3569100 3627700 3339500 4053000 6158100 4479900 7608600 553820 10301000 4515600 4074400 3673800 3699200 3507400 3940800 5853200 2 2 2 2 2 2 2 2 2 2 2 964760000 428610000 536160000 20746 1576 19071 107631;107632;107633;107634 130467;130468;130469;130470;130471 130467 5 VLQEALCVISGVPGLK Unmodified 1681.9437 0.94367768 2350 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 0 By MS/MS 2 0 1 1 81.392 81.385 3 0.032463 28329 20211116_3429_TMUAki_TMT10x_P_F2 39.91 26.809 795920 1233200 0 1343800 835100 1285400 838100 775260 780130 910850 1041900 740880 1151100 41293 1362200 799160 1301600 848170 818040 805470 884000 997020 1 1 0 1 1 1 1 1 1 1 1 795920 1233200 0 1343800 835100 1285400 838100 775260 780130 910850 1041900 740880 1151100 41293 1362200 799160 1301600 848170 818040 805470 884000 997020 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 327210000 327210000 0 20747 2350 19072 107635 130472 130472 1 VLQGDLVMNVYR Unmodified 1405.7388 0.73877028 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS 7 0 1 1 64.498 65.141 2 0.093101 21491 20211116_3435_TMUAki_TMT10x_P_F7 50.786 17.144 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20748 1092 19073 107636 130473 130473 1 VLQGDLVMNVYR Oxidation (M) 1421.7337 0.7336849 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 1 0 By MS/MS 6.25 0.433 3 1 4 57.34 57.552 2;3 0.00038983 16951 20211116_3445_TMUAki_TMT10x_S_F6 93.325 59.321 6684500 11887000 133870 11060000 7856200 6626300 6101400 11327000 10324000 9689100 10255000 6225000 11088000 695370 11275000 7496900 7129600 6411400 11230000 10316000 9530400 9894500 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6684500 11887000 133870 11060000 7856200 6626300 6101400 11327000 10324000 9689100 10255000 6225000 11088000 695370 11275000 7496900 7129600 6411400 11230000 10316000 9530400 9894500 3 3 3 3 3 3 3 3 3 3 3 934380000 0 934380000 20749 1092 19073 107637;107638;107639;107640 130474;130475;130476;130477 130475 1437 4 VLQGMVDDGSDDRPAGTR Oxidation (M) 1903.8694 0.86940312 1904 Q53GG5-2;Q53GG5 PDLIM3 PDZ and LIM domain protein 3 yes no 0 0 1 1 By MS/MS By MS/MS 2.25 0.829 1 1 2 3 1 33.511 33.389 3 1.1337E-06 10397 20211116_3441_TMUAki_TMT10x_S_F3 100.58 84.821 557670 827410 0 939110 1006000 941420 656060 628780 725220 522070 750790 519110 772480 35473 950200 954740 951890 685910 651880 735660 514280 723460 3 3 0 3 3 3 3 3 3 3 3 399480 531660 0 600780 855500 805390 508960 405840 432210 341870 465000 371830 496350 23654 611080 810550 798880 532000 430880 444230 336520 447550 2 2 0 2 2 2 2 2 2 2 2 158190 295760 0 338330 150550 136030 147100 222940 293000 180210 285790 147280 276130 11819 339120 144190 153010 153910 221000 291440 177760 275910 1 1 0 1 1 1 1 1 1 1 1 119910000 92099000 27807000 20750 1904 19074 107641;107642;107643;107644 130478;130479;130480 130480 2503 3 VLQGMVDDGSDDRPAGTR Unmodified 1887.8745 0.8744885 1904 Q53GG5-2;Q53GG5 PDLIM3 PDZ and LIM domain protein 3 yes no 0 0 0 1 By MS/MS By matching 3.33 0.471 2 1 1 2 42.036 42.021 3 1.8124E-23 12565 20211116_3430_TMUAki_TMT10x_P_F3 165.3 154.04 213510 359540 546.77 503900 796670 552760 315610 266320 232890 190980 315490 198810 336030 26379 504600 751820 553670 342730 282970 243470 189620 301780 1 1 1 1 1 1 1 1 1 1 1 213510 359540 546.77 503900 796670 552760 315610 266320 232890 190980 315490 198810 336030 26379 504600 751820 553670 342730 282970 243470 189620 301780 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 135140000 56147000 78997000 20751 1904 19074 107645;107646;107647 130481 130481 1 VLQHYQESDKGEELGPGNVQK Unmodified 2354.1503 0.15025265 3346 Q9Y6C9 MTCH2 Mitochondrial carrier homolog 2 yes yes 0 0 0 1 By MS/MS 6 0 1 1 42.861 42.914 4 5.2128E-08 10576 20211116_3434_TMUAki_TMT10x_P_F6 100.28 82.687 4193000 6590800 54595 9474100 17268000 15809000 6868400 7770200 8625300 5807900 7627200 3904200 6160700 538380 9556200 16297000 15534000 7565100 8247200 8662500 5753200 7388600 3 3 1 3 3 3 3 3 3 3 3 4193000 6590800 54595 9474100 17268000 15809000 6868400 7770200 8625300 5807900 7627200 3904200 6160700 538380 9556200 16297000 15534000 7565100 8247200 8662500 5753200 7388600 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 357160000 357160000 0 20752 3346 19075 107648 130482;130483;130484 130483 3 VLQLINDNTATALSYGVFR Unmodified 2094.111 0.11095402 3301 Q9Y4L1;Q9Y4L1-2 HYOU1 Hypoxia up-regulated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 80.257 80.226 3 3.8243E-25 26794 20211116_3431_TMUAki_TMT10x_P_F4 179.09 167.82 5109700 9260400 0 7413800 7466500 8589700 6908300 6479700 6545400 6832300 7088300 4756700 8634000 343220 7711300 7137800 8630600 7025300 6705100 6694000 6658200 6821000 3 3 0 3 3 3 3 3 3 3 3 1957600 3190600 0 2976500 2097100 3923000 2372200 2126900 2328100 2372700 2502400 1822300 2976400 114480 3065800 2014500 3897800 2390500 2260400 2376600 2307100 2408500 1 1 0 1 1 1 1 1 1 1 1 3152100 6069800 0 4437300 5369300 4666600 4536000 4352800 4217300 4459600 4585900 2934400 5657700 228740 4645500 5123300 4732800 4634800 4444700 4317400 4351100 4412500 2 2 0 2 2 2 2 2 2 2 2 4174800000 2394600000 1780200000 20753 3301 19076 107649;107650;107651;107652 130485;130486;130487 130485 3 VLQLYPNNK Unmodified 1087.6026 0.60259438 1497 Q02790 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 1.2 0.4 4 1 3 2 54.179 54.011 2;3 4.0226E-06 15638 20211116_3428_TMUAki_TMT10x_P_F1 187.55 146.52 16139000 23042000 223480 29525000 35949000 29538000 18554000 19613000 21901000 16738000 23377000 15027000 21525000 1604500 29662000 34031000 29867000 19834000 20356000 22187000 16466000 22506000 6 6 4 6 6 6 6 6 6 6 6 11637000 16143000 117760 20534000 31412000 25797000 14477000 13518000 15193000 11409000 16326000 10834000 15079000 1132200 20716000 29686000 25680000 15593000 14301000 15465000 11230000 15714000 3 3 1 3 3 3 3 3 3 3 3 4501600 6899200 105720 8990900 4537300 3740700 4077000 6094500 6708400 5328800 7051400 4192200 6445500 472240 8945900 4345400 4187500 4241000 6054800 6721600 5235900 6791600 3 3 3 3 3 3 3 3 3 3 3 1516200000 1151500000 364650000 20754 1497 19077 107653;107654;107655;107656;107657 130488;130489;130490;130491;130492;130493 130488 6 VLQPTVFPVVPR Unmodified 1350.8024 0.80235682 905 P33121;P33121-2;P33121-3 ACSL1 Long-chain-fatty-acid--CoA ligase 1 yes no 0 0 0 0 By MS/MS 3.67 0.471 1 2 3 68.099 67.781 2 3.5967E-19 24424 20211116_3441_TMUAki_TMT10x_S_F3 219.5 165.3 5307700 9301100 45149 9126900 7235400 6112600 6088700 6832000 5630800 6827600 7730400 4942300 8678300 509120 9278200 6911600 6429200 6221900 6909900 5822900 6668400 7392200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5307700 9301100 45149 9126900 7235400 6112600 6088700 6832000 5630800 6827600 7730400 4942300 8678300 509120 9278200 6911600 6429200 6221900 6909900 5822900 6668400 7392200 2 2 2 2 2 2 2 2 2 2 2 757930000 0 757930000 20755 905 19078 107658;107659;107660 130494;130495;130496 130494 3 VLQQFAACFLETLPAQEEQTPK Unmodified 2547.2679 0.26792494 1593 Q13111;Q13111-3 CHAF1A Chromatin assembly factor 1 subunit A yes no 0 0 0 0 By MS/MS By MS/MS 7.4 0.49 3 2 4 1 81.475 81.489 3;4 1.2183E-07 27013 20211116_3436_TMUAki_TMT10x_P_F8 93.851 80.663 7048600 11411000 36008 11202000 6807300 8090900 7626900 3622900 3450200 4513500 7044900 6562600 10647000 546140 11396000 6545500 8333900 7564100 3935600 3820300 4371400 6684700 6 6 3 6 6 6 6 6 6 6 6 5372500 8649700 36008 8437900 4781200 6910900 5582900 2959500 2818700 3647700 5405100 5002100 8070300 410340 8600200 4602800 7045800 5535400 3229100 3080200 3534200 5134100 5 5 3 5 5 5 5 5 5 5 5 1676100 2761200 0 2763700 2026200 1180000 2044000 663340 631530 865790 1639800 1560500 2576500 135800 2795600 1942700 1288100 2028700 706570 740060 837230 1550600 1 1 0 1 1 1 1 1 1 1 1 1220300000 985530000 234800000 20756 1593 19079 107661;107662;107663;107664;107665 130497;130498;130499;130500;130501;130502 130499 6 VLQQGHFEDDDPDGFLG Unmodified 1887.8275 0.82752153 2016 Q6SPF0 SAMD1 Atherin yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 67.806 67.806 2 1.7855E-10 23322 20211116_3439_TMUAki_TMT10x_S_F1 124.1 102.73 788160 1422200 21075 1198100 854580 1770200 1038000 1079200 1081300 1057800 1033400 734010 1326200 85915 1246600 825300 1752500 1044700 1131500 1096500 1034000 998360 1 1 1 1 1 1 1 1 1 1 1 788160 1422200 21075 1198100 854580 1770200 1038000 1079200 1081300 1057800 1033400 734010 1326200 85915 1246600 825300 1752500 1044700 1131500 1096500 1034000 998360 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 452530000 452530000 0 20757 2016 19080 107666;107667 130503;130504 130504 2 VLQSALAAIR Unmodified 1040.6342 0.63422886 1575 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.957 1 2 2 1 4 2 66.314 66.115 2 2.0349E-08 22188 20211116_3429_TMUAki_TMT10x_P_F2 169.77 111.58 38982000 70584000 586940 67219000 65440000 84531000 49694000 60009000 56677000 53163000 58773000 36300000 65849000 4071100 69071000 62381000 84496000 51446000 62045000 57428000 52203000 56631000 9 9 7 9 9 9 9 9 9 9 9 27448000 49139000 531760 47537000 51364000 73204000 38762000 42181000 39811000 36197000 41317000 25561000 45846000 3106200 48992000 48965000 72295000 40009000 44273000 40509000 35599000 39811000 6 6 6 6 6 6 6 6 6 6 6 11534000 21445000 55186 19682000 14076000 11327000 10932000 17828000 16865000 16965000 17456000 10739000 20004000 964930 20079000 13416000 12201000 11437000 17772000 16919000 16605000 16821000 3 3 1 3 3 3 3 3 3 3 3 4780100000 2916100000 1863900000 20758 1575 19081 107668;107669;107670;107671;107672;107673 130505;130506;130507;130508;130509;130510;130511;130512;130513 130506 9 VLQSEFCNAVR Unmodified 1321.6449 0.6448699 2955 Q9NUP9 LIN7C Protein lin-7 homolog C yes yes 0 0 0 0 By MS/MS 6 0 1 1 51.057 51.158 2 0.00015993 13919 20211116_3434_TMUAki_TMT10x_P_F6 90.964 66.042 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20759 2955 19082 107674 130514 130514 1 VLQSPATTVVR Unmodified 1169.6768 0.67682195 2272 Q8TCS8 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 42.032 42.096 2 2.108E-07 10972 20211116_3436_TMUAki_TMT10x_P_F8 118.81 89.915 754390 1362800 6581 1450600 704920 662880 698210 1131200 1079000 900180 1169500 702460 1272000 67985 1461800 676140 734410 720370 1119600 1084200 888680 1125400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 754390 1362800 6581 1450600 704920 662880 698210 1131200 1079000 900180 1169500 702460 1272000 67985 1461800 676140 734410 720370 1119600 1084200 888680 1125400 1 1 1 1 1 1 1 1 1 1 1 38705000 0 38705000 20760 2272 19083 107675;107676 130515;130516 130515 2 VLQVSFK Unmodified 819.48544 0.48543935 815;1717 P26378;P26378-4;P26378-2;P26378-5;P26378-1;P26378-3;Q12926;Q12926-2;Q14576-2;Q14576 ELAVL4;ELAVL2;ELAVL3 ELAV-like protein 4;ELAV-like protein 2;ELAV-like protein 3 no no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 57.637 57.478 2 0.0017591 17371 20211116_3440_TMUAki_TMT10x_S_F2 150.84 73.99 22607000 34061000 238690 33495000 36136000 35414000 24593000 29300000 26805000 26206000 29246000 21051000 31781000 2286200 34239000 34373000 35821000 25618000 30006000 27259000 25721000 28137000 3 3 3 3 3 3 3 3 3 3 3 14420000 22059000 174750 21301000 26752000 27661000 16573000 18303000 16445000 16517000 18257000 13428000 20581000 1531100 21879000 25406000 27576000 17339000 19028000 16800000 16205000 17555000 2 2 2 2 2 2 2 2 2 2 2 8186600 12002000 63948 12194000 9383700 7753000 8020500 10997000 10359000 9688800 10989000 7623000 11200000 755090 12360000 8967100 8245100 8279200 10978000 10459000 9516500 10581000 1 1 1 1 1 1 1 1 1 1 1 1655200000 940510000 714650000 20761 815;1717 19084 107677;107678;107679 130517;130518;130519 130519 3 VLQYHKPVQASYFETLR Unmodified 2078.0949 0.094910023 455 O95989 NUDT3 Diphosphoinositol polyphosphate phosphohydrolase 1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 53.387 53.147 4 2.9045E-15 17347 20211116_3430_TMUAki_TMT10x_P_F3 147.17 119.91 6061100 10363000 115640 10858000 8871200 11768000 8217900 8065000 7610400 7239500 8081500 5644100 9672000 620920 11056000 8494900 11850000 8351100 8362100 7785500 7104500 7781400 3 3 2 3 3 3 3 3 3 3 3 4131600 6824100 7480.7 7190100 7266200 9840800 6424500 5592100 5144900 5012800 5506800 3846700 6369000 364690 7348900 6944600 9766200 6521100 5882800 5302900 4919600 5301000 2 2 1 2 2 2 2 2 2 2 2 1929600 3539300 108160 3667900 1605100 1927600 1793300 2472900 2465500 2226700 2574700 1797400 3303000 256230 3706700 1550300 2083300 1830000 2479400 2482700 2184900 2480400 1 1 1 1 1 1 1 1 1 1 1 1299400000 770220000 529180000 20762 455 19085 107680;107681;107682;107683 130520;130521 130520 2 VLRDNIQGITK Unmodified 1255.7248 0.72483478 1366 P62805 HIST1H4A Histone H4 yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 3 2 1 43.684 43.777 3 1.9327E-08 11632 20211116_3436_TMUAki_TMT10x_P_F8 150.69 109.24 3589900 5304400 46057 7819000 4979400 4151300 3591500 3238800 3582900 2842600 4584500 3342800 4959000 359970 7744200 4742300 4434800 3715300 3327200 3680900 2792600 4391400 2 2 1 2 2 2 2 2 2 2 2 1493400 2135900 46057 3175500 3377900 2832600 1733500 1566700 1708300 1353000 1893200 1390900 1996900 193130 3160900 3200300 2878400 1843600 1650400 1745500 1330200 1820600 1 1 1 1 1 1 1 1 1 1 1 2096400 3168500 0 4643500 1601500 1318700 1858000 1672100 1874600 1489600 2691300 1952000 2962100 166830 4583200 1542000 1556400 1871700 1676800 1935300 1462400 2570900 1 1 0 1 1 1 1 1 1 1 1 292580000 153360000 139230000 20763 1366 19086 107684;107685;107686 130522;130523;130524 130522 3 VLRDNIQGITKPAIR Unmodified 1692.9999 0.99988743 1366 P62805 HIST1H4A Histone H4 yes yes 0 0 0 2 By MS/MS By MS/MS 3 1.15 2 3 4 5 1 8 7 45.598 45.548 2;3;4 1.6746E-110 12585 20211116_3431_TMUAki_TMT10x_P_F4 342.32 296.42 154870000 242300000 2450700 316140000 358410000 321960000 191450000 195040000 251150000 179290000 220460000 144210000 226370000 16861000 317390000 339540000 324780000 204770000 204240000 251810000 175750000 213620000 20 20 9 20 20 20 20 20 20 20 20 123860000 190160000 2373900 253930000 333140000 299380000 170440000 154820000 203160000 143580000 176020000 115330000 177680000 14440000 255230000 315420000 298940000 182400000 164370000 204290000 140690000 170640000 12 12 7 12 12 12 12 12 12 12 12 31011000 52140000 76873 62209000 25266000 22576000 21012000 40221000 47994000 35707000 44433000 28873000 48690000 2421700 62160000 24115000 25840000 22371000 39868000 47518000 35060000 42973000 8 8 2 8 8 8 8 8 8 8 8 66452000000 37526000000 28926000000 20764 1366 19087 107687;107688;107689;107690;107691;107692;107693;107694;107695;107696;107697;107698;107699;107700;107701 130525;130526;130527;130528;130529;130530;130531;130532;130533;130534;130535;130536;130537;130538;130539;130540;130541;130542;130543;130544;130545 130537 21 VLRHEEFEEGCK Unmodified 1531.7089 0.70892672 2862 Q9HC38-2;Q9HC38-3 GLOD4 Glyoxalase domain-containing protein 4 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 33.705 33.599 4 1.4223E-06 7793 20211116_3431_TMUAki_TMT10x_P_F4 119.74 102.38 1162000 1824500 14793 1944400 2356400 1939500 1260500 1086100 1404700 1101200 1564200 1082100 1702900 126850 1975000 2232800 1956900 1340300 1147800 1428400 1074900 1504000 2 2 2 2 2 2 2 2 2 2 2 866850 1325800 10059 1432600 2061500 1687900 961930 776730 1037500 823900 1107600 807190 1237600 97975 1457800 1949700 1683300 1035600 837120 1054700 802720 1066300 1 1 1 1 1 1 1 1 1 1 1 295180 498620 4733.3 511790 294890 251590 298550 309320 367140 277310 456590 274870 465310 28879 517290 283130 273650 304760 310630 373680 272150 437690 1 1 1 1 1 1 1 1 1 1 1 98392000 85870000 12522000 20765 2862 19088 107702;107703 130546;130547 130546 2 VLRPPGGGSNFSLGFDEPTEQPVRK Unmodified 2683.3718 0.37181317 3151 Q9UK76;Q9UK76-2 HN1 Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed yes no 0 0 0 2 By MS/MS By MS/MS 5.7 3.1 3 2 5 5 5 56.169 56.266 3;4;5 3.217E-38 16646 20211116_3436_TMUAki_TMT10x_P_F8 195.36 174.92 143970000 242270000 1261600 239580000 160530000 206210000 148460000 135960000 139180000 133830000 168700000 134050000 226050000 12707000 244100000 153660000 210550000 150930000 141710000 143050000 130790000 161830000 23 23 14 23 23 23 23 23 23 23 23 78291000 130890000 739120 130190000 91790000 145010000 88927000 73873000 76702000 72955000 91225000 72900000 122130000 7087900 133090000 87967000 145210000 89974000 78671000 79081000 71290000 87552000 14 14 7 14 14 14 14 14 14 14 14 65674000 111380000 522450 109390000 68740000 61206000 59531000 62084000 62481000 60874000 77479000 61150000 103920000 5618800 111020000 65688000 65345000 60957000 63043000 63967000 59502000 74276000 9 9 7 9 9 9 9 9 9 9 9 54876000000 26959000000 27917000000 20766 3151 19089 107704;107705;107706;107707;107708;107709;107710;107711;107712;107713 130548;130549;130550;130551;130552;130553;130554;130555;130556;130557;130558;130559;130560;130561;130562;130563;130564;130565;130566;130567;130568;130569;130570 130561 23 VLRPQVTAVAQQNQGEVPEPQDMK Oxidation (M) 2677.3494 0.34936316 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 1 1 By matching By MS/MS 4.33 0.471 2 1 1 2 45.911 46.071 4 3.4182E-17 11935 20211116_3444_TMUAki_TMT10x_S_F5 137.72 110.4 1010200 1914100 451.35 2289000 816600 852910 731040 2163400 2196100 1732400 1831100 940530 1787500 74935 2287200 780440 986920 791350 2120600 2157100 1709800 1777700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1010200 1914100 451.35 2289000 816600 852910 731040 2163400 2196100 1732400 1831100 940530 1787500 74935 2287200 780440 986920 791350 2120600 2157100 1709800 1777700 2 2 1 2 2 2 2 2 2 2 2 470790000 187380000 283410000 20767 1695 19090 107714;107715;107716 130571;130572 130571 2285 2 VLSAADK Unmodified 702.3912 0.39120462 36 CON__P01966 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 36.737 36.807 2 0.0080795 8553 20211116_3444_TMUAki_TMT10x_S_F5 102.72 46.708 + 2179200 3727100 67081 3719000 4174500 5170400 3478200 2863800 3660800 3015900 3554700 2029500 3477800 271130 3816200 3989300 5125900 3570100 3032700 3712500 2939200 3432400 2 2 2 2 2 2 2 2 2 2 2 1690100 2944000 64960 3016500 3686000 4709900 2870100 2421000 3147400 2483200 2922600 1574100 2747300 228610 3097500 3517800 4642200 2962600 2578800 3181900 2422700 2826300 1 1 1 1 1 1 1 1 1 1 1 489110 783140 2121.3 702480 488510 460500 608040 442890 513370 532640 632120 455430 730450 42519 718730 471540 483650 607580 453880 530620 516510 606110 1 1 1 1 1 1 1 1 1 1 1 130720000 100520000 30195000 20768 36 19091 107717;107718;107719;107720 130573;130574;130575;130576 130576 4 VLSAPPHFHFGQTNR Unmodified 1706.8641 0.86412223 821 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 By MS/MS By MS/MS 4.23 2.02 2 4 5 4 3 4 2 2 12 14 42.176 42.238 3;4 6.3877E-30 13916 20211116_3441_TMUAki_TMT10x_S_F3 204.18 183.72 26900000 43560000 339240 51186000 46678000 48103000 28876000 38384000 41248000 33508000 39396000 25048000 40674000 2564800 51634000 44324000 48976000 30604000 39371000 41355000 32927000 38061000 41 41 25 41 41 41 41 41 41 41 41 13578000 21344000 111540 25688000 34338000 36476000 17806000 18922000 20502000 16727000 19426000 12643000 19932000 1300600 26060000 32512000 36099000 19009000 20059000 20701000 16427000 18772000 20 20 10 20 20 20 20 20 20 20 20 13322000 22216000 227690 25499000 12340000 11627000 11070000 19462000 20746000 16781000 19970000 12405000 20742000 1264200 25574000 11812000 12876000 11595000 19312000 20654000 16500000 19289000 21 21 15 21 21 21 21 21 21 21 21 13317000000 7814800000 5502300000 20769 821 19092 107721;107722;107723;107724;107725;107726;107727;107728;107729;107730;107731;107732;107733;107734;107735;107736;107737;107738;107739;107740;107741;107742;107743;107744;107745;107746 130577;130578;130579;130580;130581;130582;130583;130584;130585;130586;130587;130588;130589;130590;130591;130592;130593;130594;130595;130596;130597;130598;130599;130600;130601;130602;130603;130604;130605;130606;130607;130608;130609;130610;130611;130612;130613;130614;130615;130616;130617;130618;130619 130602 43 VLSAVGSAQLLMSQK Oxidation (M) 1546.8389 0.83887826 3238 Q9Y2H0;Q9Y2H0-1;Q9Y2H0-3 DLGAP4 Disks large-associated protein 4 yes no 0 0 1 0 By MS/MS 2 0 1 1 64.551 64.253 3 0.001256 21424 20211116_3429_TMUAki_TMT10x_P_F2 66.673 52.32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20770 3238 19093 107747 130620 130620 3223 1 VLSDVDAFIAYVGTDQK Unmodified 1839.9254 0.92544466 2852 Q9HAV4 XPO5 Exportin-5 yes yes 0 0 0 0 By MS/MS 4 0 1 1 81.313 81.321 3 0.00042968 27251 20211116_3431_TMUAki_TMT10x_P_F4 63.918 42.077 2048600 3149400 0 3271500 1834500 3382000 2191900 1516000 1509700 1887100 2316000 1907300 2939100 149110 3330500 1766900 3396600 2183600 1646600 1594300 1827700 2209200 1 1 0 1 1 1 1 1 1 1 1 2048600 3149400 0 3271500 1834500 3382000 2191900 1516000 1509700 1887100 2316000 1907300 2939100 149110 3330500 1766900 3396600 2183600 1646600 1594300 1827700 2209200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 610050000 610050000 0 20771 2852 19094 107748 130621 130621 1 VLSEDAIR Unmodified 901.4869 0.48689592 790 P23919;P23919-2 DTYMK Thymidylate kinase yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 40.121 40.006 2 0.01507 13152 20211116_3441_TMUAki_TMT10x_S_F3 77.318 25.887 5029900 8221900 16942 8852400 7640500 7005000 5783200 5610900 5958300 5233100 6871300 4683400 7674200 456620 8958700 7279600 7218800 5968700 5763800 6086300 5126500 6600200 4 4 1 4 4 4 4 4 4 4 4 2439300 3858500 0 4059700 4817700 4589700 2908200 2633400 2536300 2358400 3071600 2271200 3601100 223240 4135200 4570600 4599000 3038200 2768000 2615500 2314600 2946500 2 2 0 2 2 2 2 2 2 2 2 2590600 4363400 16942 4792700 2822800 2415300 2875000 2977500 3422000 2874700 3799700 2412200 4073100 233380 4823500 2708900 2619800 2930500 2995800 3470800 2811900 3653700 2 2 1 2 2 2 2 2 2 2 2 258870000 137980000 120890000 20772 790 19095 107749;107750;107751;107752 130622;130623;130624 130624 3 VLSGDLGQLPTGIRDFVEHSAR Unmodified 2366.2343 0.23425705 1865 Q16822;Q16822-2 PCK2 Phosphoenolpyruvate carboxykinase [GTP], mitochondrial yes no 0 0 0 1 By MS/MS 8 0 1 1 75.085 75.099 4 5.9196E-20 24379 20211116_3436_TMUAki_TMT10x_P_F8 156.74 141.81 1357200 2437700 0 2092400 1662700 2636600 1951400 1395900 1318200 1514200 1511900 1263700 2273300 0 2167100 1601500 2624600 1944700 1485500 1375600 1474000 1452500 1 1 0 1 1 1 1 1 1 1 1 1357200 2437700 0 2092400 1662700 2636600 1951400 1395900 1318200 1514200 1511900 1263700 2273300 0 2167100 1601500 2624600 1944700 1485500 1375600 1474000 1452500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 522530000 522530000 0 20773 1865 19096 107753 130625 130625 1 VLSGEFQIVNPHLLK Unmodified 1692.9563 0.95629128 791 P23921 RRM1 Ribonucleoside-diphosphate reductase large subunit yes yes 0 0 0 0 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 69.608 69.608 3 2.6643E-10 24089 20211116_3439_TMUAki_TMT10x_S_F1 120.53 85.177 7249400 11883000 156750 11136000 7373200 12317000 7750300 6147200 5642300 6352400 8109200 6751000 11085000 748850 11431000 7088800 12336000 7776500 6567600 5919900 6195600 7746300 2 2 2 2 2 2 2 2 2 2 2 7249400 11883000 156750 11136000 7373200 12317000 7750300 6147200 5642300 6352400 8109200 6751000 11085000 748850 11431000 7088800 12336000 7776500 6567600 5919900 6195600 7746300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 747990000 747990000 0 20774 791 19097 107754;107755;107756;107757 130626;130627;130628;130629;130630 130628 5 VLSGTIHAGQPVK Unmodified 1305.7405 0.74048484 1757 Q15029;Q15029-2;Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 By MS/MS By MS/MS 5 3.29 2 1 2 3 2 39.139 39.319 3 7.8447E-07 9088 20211116_3447_TMUAki_TMT10x_S_F8 117.79 88.249 3158900 5207700 14544 5816600 5106000 5041900 3256100 3796600 4180800 3361700 4465600 2941400 4861700 300990 5879300 4850100 5156100 3428100 3909900 4222900 3301100 4299000 4 4 3 4 4 4 4 4 4 4 4 1516600 2343500 6532.1 2667200 3500700 3581900 1719000 1723700 1871700 1523800 1959200 1412100 2188000 157880 2711800 3312100 3550800 1841600 1840300 1900500 1496400 1887200 2 2 1 2 2 2 2 2 2 2 2 1642300 2864200 8012.1 3149400 1605300 1460000 1537000 2072900 2309100 1837900 2506500 1529200 2673700 143110 3167500 1538000 1605300 1586600 2069600 2322400 1804700 2411800 2 2 2 2 2 2 2 2 2 2 2 406930000 266890000 140040000 20775 1757 19098 107758;107759;107760;107761;107762 130631;130632;130633;130634 130634 4 VLSIGDGIAR Unmodified 999.57129 0.57129425 805 P25705;P25705-2;P25705-3 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.5 1.12 2 2 2 2 4 4 52.483 52.676 2 8.2909E-11 15443 20211116_3431_TMUAki_TMT10x_P_F4 203.02 153.58 69100000 114040000 608510 124180000 98640000 104140000 79793000 97367000 94169000 84033000 99959000 64341000 106450000 6344500 125670000 94120000 107170000 82368000 98939000 95377000 82620000 96248000 10 10 5 10 10 10 10 10 10 10 10 28489000 46448000 229610 50943000 57859000 63155000 39001000 39574000 37638000 34405000 40137000 26527000 43357000 2878000 51835000 55011000 63054000 40504000 41272000 38439000 33815000 38641000 5 5 2 5 5 5 5 5 5 5 5 40611000 67594000 378900 73242000 40781000 40982000 40792000 57793000 56531000 49628000 59822000 37814000 63093000 3466500 73837000 39109000 44117000 41864000 57667000 56938000 48805000 57607000 5 5 3 5 5 5 5 5 5 5 5 6263900000 2823200000 3440700000 20776 805 19099 107763;107764;107765;107766;107767;107768;107769;107770 130635;130636;130637;130638;130639;130640;130641;130642;130643;130644;130645 130635 11 VLSIQSHVIR Unmodified 1150.6822 0.68224168 109 O00764;O00764-2 PDXK Pyridoxal kinase yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 39.933 40.005 3 3.0043E-09 11668 20211116_3429_TMUAki_TMT10x_P_F2 141.27 116.18 268870 440000 13044 490030 292330 243750 257590 377000 380440 329060 390610 250440 410760 34776 492690 280220 266500 266900 375140 382020 323350 376490 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 268870 440000 13044 490030 292330 243750 257590 377000 380440 329060 390610 250440 410760 34776 492690 280220 266500 266900 375140 382020 323350 376490 1 1 1 1 1 1 1 1 1 1 1 23548000 0 23548000 20777 109 19100 107771;107772 130646;130647 130646 2 VLSKPPEGVVSEVEMLSSQER Oxidation (M) 2315.1679 0.16787655 1501 Q02952;Q02952-3;Q02952-2 AKAP12 A-kinase anchor protein 12 yes no 0 0 1 1 By MS/MS By MS/MS 4.6 0.49 2 3 3 2 69.047 69.125 3 3.0737E-05 22369 20211116_3433_TMUAki_TMT10x_P_F5 78.324 62.932 20281000 32595000 167600 29082000 20743000 45605000 24649000 30881000 31730000 29337000 28495000 18884000 30402000 1782200 30163000 19994000 45109000 25017000 32095000 31855000 28716000 27588000 7 7 4 7 7 7 7 7 7 7 7 20281000 32595000 167600 29082000 20743000 45605000 24649000 30881000 31730000 29337000 28495000 18884000 30402000 1782200 30163000 19994000 45109000 25017000 32095000 31855000 28716000 27588000 7 7 4 7 7 7 7 7 7 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2576100000 2576100000 0 20778 1501 19101 107773;107774;107775;107776;107777 130648;130649;130650;130651;130652;130653;130654;130655;130656 130653 2039 9 VLSKPPEGVVSEVEMLSSQER Unmodified 2299.173 0.17296193 1501 Q02952;Q02952-3;Q02952-2 AKAP12 A-kinase anchor protein 12 yes no 0 0 0 1 By MS/MS By MS/MS 4.57 0.904 1 2 3 1 4 3 72.135 71.765 3 4.0961E-24 23148 20211116_3431_TMUAki_TMT10x_P_F4 159.73 136.55 2485000 4072800 43907 4159500 3359200 2511200 2951100 1811400 1445000 1851700 2812200 2314100 3800700 259180 4212600 3213300 2644200 2968100 1878200 1584400 1806900 2670500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2485000 4072800 43907 4159500 3359200 2511200 2951100 1811400 1445000 1851700 2812200 2314100 3800700 259180 4212600 3213300 2644200 2968100 1878200 1584400 1806900 2670500 1 1 1 1 1 1 1 1 1 1 1 186640000 0 186640000 20779 1501 19101 107778;107779;107780;107781;107782;107783;107784 130657;130658;130659;130660;130661;130662;130663 130658 7 VLSLNFSECHTK Unmodified 1433.6973 0.6972994 3188 Q9UN86;Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 50.847 51.43 3 9.1649E-17 16451 20211116_3446_TMUAki_TMT10x_S_F7 202.32 178.94 7730500 12697000 95527 14062000 9542100 11737000 7257300 8772500 8741900 8520500 9613800 7198600 11853000 755310 14214000 9097800 12033000 7526800 9061300 8859400 8332000 9247100 2 2 2 2 2 2 2 2 2 2 2 3639500 5102600 58472 5694800 5220800 7360200 3977100 3760000 3446800 3737800 4067700 3389200 4763500 378380 5792700 4978200 7314400 4082800 4003900 3551800 3651500 3904800 1 1 1 1 1 1 1 1 1 1 1 4091000 7594300 37055 8367100 4321300 4376400 3280100 5012500 5295100 4782700 5546100 3809400 7089100 376930 8421500 4119600 4718900 3444000 5057400 5307600 4680500 5342400 1 1 1 1 1 1 1 1 1 1 1 1104100000 515940000 588200000 20780 3188 19102 107785;107786 130664;130665 130665 2 VLSNRPIMFR Oxidation (M) 1247.6809 0.68086147 1616 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 0 0 1 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 39.267 39.354 3 0.0020173 9344 20211116_3444_TMUAki_TMT10x_S_F5 72.582 43.855 3632800 6104200 29501 6225600 8993100 9624400 4990800 5424400 6264100 4897800 5519400 3382700 5696400 403750 6393400 8524200 9500600 5311100 5711300 6290500 4805100 5347400 3 3 3 3 3 3 3 3 3 3 3 3396500 5671200 23288 5811400 8715000 9443100 4794400 5041500 5878400 4609700 5115200 3162600 5292300 377780 5973000 8259200 9297000 5101800 5335000 5905700 4519900 4958100 2 2 2 2 2 2 2 2 2 2 2 236360 433080 6213.3 414240 278120 181300 196360 382920 385740 288070 404180 220120 404040 25971 420440 264990 203600 209320 376310 384790 285250 389330 1 1 1 1 1 1 1 1 1 1 1 886180000 799190000 86991000 20781 1616 19103 107787;107788;107789;107790 130666;130667;130668;130669 130669 2170 4 VLSNRPIMFR Unmodified 1231.6859 0.68594685 1616 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.816 2 2 2 4 2 44.683 44.804 3 7.4565E-09 12542 20211116_3433_TMUAki_TMT10x_P_F5 173.28 135.72 6450500 11804000 90318 13646000 12169000 8015100 6291700 6425800 5628200 5882500 9525200 6006700 11021000 698080 13706000 11526000 8476800 6668700 6597300 5893100 5767600 9068000 5 5 4 5 5 5 5 5 5 5 5 2476000 4338100 19500 5107600 7568700 5924900 3883800 2426900 2232700 2343600 3648100 2305500 4050800 293800 5168400 7165700 5906800 4081100 2641600 2393900 2292400 3475400 2 2 1 2 2 2 2 2 2 2 2 3974500 7466000 70818 8538000 4600200 2090200 2407800 3998900 3395500 3538900 5877100 3701200 6970600 404280 8538000 4360100 2570000 2587600 3955700 3499200 3475200 5592600 3 3 3 3 3 3 3 3 3 3 3 577030000 324990000 252040000 20782 1616 19103 107791;107792;107793;107794;107795;107796 130670;130671;130672;130673;130674;130675 130671 6 VLSPEAVR Unmodified 869.49707 0.49706667 397 O94925-3;O94925 GLS Glutaminase kidney isoform, mitochondrial yes no 0 0 0 0 By MS/MS 4 0 1 1 35.638 35.745 2 0.0040046 8966 20211116_3442_TMUAki_TMT10x_S_F4 99.375 43.871 149720 255500 1375.3 253980 134750 114850 143950 103700 131160 101440 177900 139420 238400 13485 257130 129520 125340 145140 105930 135650 99163 170160 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 149720 255500 1375.3 253980 134750 114850 143950 103700 131160 101440 177900 139420 238400 13485 257130 129520 125340 145140 105930 135650 99163 170160 1 1 1 1 1 1 1 1 1 1 1 40353000 0 40353000 20783 397 19104 107797 130676 130676 1 VLSRPNAQELPSMYQR Oxidation (M) 1903.9574 0.95743026 2593 Q99623;Q99623-2 PHB2 Prohibitin-2 yes no 0 0 1 1 By MS/MS By MS/MS 5.85 2.78 4 1 3 3 9 13 7 33.658 33.842 2;3 2.0615E-10 8386 20211116_3436_TMUAki_TMT10x_P_F8 125.5 106.21 20042000 34298000 46342 41805000 36944000 40202000 22593000 38762000 40535000 30989000 32032000 18660000 32032000 1482400 42093000 35054000 41022000 24222000 39251000 40151000 30586000 31163000 32 32 9 32 32 32 32 32 32 32 32 11744000 19001000 14228 23523000 31135000 34480000 17275000 21554000 22805000 17041000 17459000 10933000 17747000 1058600 23842000 29496000 34160000 18419000 22432000 22769000 16829000 17007000 19 19 4 19 19 19 19 19 19 19 19 8298000 15297000 32114 18281000 5808800 5721800 5317400 17208000 17730000 13948000 14573000 7726300 14285000 423790 18251000 5557700 6861800 5803600 16819000 17382000 13757000 14156000 13 13 5 13 13 13 13 13 13 13 13 5816800000 4130300000 1686500000 20784 2593 19105 107798;107799;107800;107801;107802;107803;107804;107805;107806;107807;107808;107809;107810;107811;107812;107813;107814;107815;107816;107817 130677;130678;130679;130680;130681;130682;130683;130684;130685;130686;130687;130688;130689;130690;130691;130692;130693;130694;130695;130696;130697;130698;130699;130700;130701;130702;130703;130704;130705;130706;130707;130708;130709 130692 2828 33 VLSRPNAQELPSMYQR Unmodified 1887.9625 0.96251564 2593 Q99623;Q99623-2 PHB2 Prohibitin-2 yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 45.624 45.464 3 4.2889E-47 13729 20211116_3429_TMUAki_TMT10x_P_F2 250.27 228.22 10695000 16628000 88528 20057000 13042000 12574000 10800000 7963900 7606700 7556100 12064000 9957800 15529000 923830 20107000 12450000 13167000 10973000 8317600 8036400 7396500 11500000 4 4 2 4 4 4 4 4 4 4 4 5510600 7865700 45115 10121000 8967000 9417400 7649900 4101200 4400700 3983700 5866100 5131100 7348000 526700 10155000 8566200 9517800 7727900 4434600 4671100 3895500 5613400 2 2 1 2 2 2 2 2 2 2 2 5184000 8762600 43413 9935500 4075400 3156200 3149800 3862700 3206000 3572500 6198000 4826700 8180800 397130 9951600 3883300 3649400 3245200 3883000 3365200 3501000 5886300 2 2 1 2 2 2 2 2 2 2 2 1254000000 572330000 681650000 20785 2593 19105 107818;107819 130710;130711;130712;130713 130710 4 VLSSIEQK Unmodified 902.5073 0.50729701 896 P31947;P31947-2 SFN 14-3-3 protein sigma yes no 0 0 0 0 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 45.204 45.352 2 4.3624E-05 12775 20211116_3433_TMUAki_TMT10x_P_F5 198.07 0 16120000 26190000 219090 23792000 20608000 24349000 19289000 13244000 14534000 13605000 19784000 15011000 24429000 1603500 24449000 19740000 24521000 19487000 14037000 15180000 13273000 18922000 3 3 3 3 3 3 3 3 3 3 3 11426000 18555000 210950 16373000 15461000 20149000 13190000 9264200 10365000 9520700 13901000 10640000 17306000 1200400 16914000 14780000 20049000 13411000 9976200 10793000 9287900 13300000 2 2 2 2 2 2 2 2 2 2 2 4694100 7634600 8141.9 7418600 5147400 4199700 6098700 3979500 4169600 4084700 5882800 4370700 7123000 403110 7535300 4959900 4472000 6076700 4060400 4387100 3985000 5621900 1 1 1 1 1 1 1 1 1 1 1 1061900000 514240000 547640000 20786 896 19106 107820;107821;107822;107823;107824 130714;130715;130716;130717;130718;130719 130715 6 VLSVPESTPFTAVLK Unmodified 1586.892 0.89195969 1324 P61960 UFM1 Ubiquitin-fold modifier 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.86 3.31 4 1 2 4 3 77.792 77.772 2;3 1.1973E-29 25521 20211116_3436_TMUAki_TMT10x_P_F8 206.1 178.84 34358000 58325000 746450 53198000 39074000 54796000 43413000 31346000 31830000 36170000 42877000 31995000 54404000 3485400 54657000 37612000 55197000 43451000 33198000 33280000 35126000 41020000 5 5 4 5 5 5 5 5 5 5 5 20780000 34587000 298540 30322000 20448000 38388000 25439000 19032000 19349000 22344000 25361000 19349000 32257000 1871600 31355000 19742000 38174000 25354000 20427000 20165000 21686000 24279000 3 3 2 3 3 3 3 3 3 3 3 13578000 23738000 447900 22876000 18626000 16408000 17975000 12313000 12481000 13826000 17516000 12646000 22147000 1613800 23302000 17870000 17023000 18097000 12771000 13116000 13441000 16741000 2 2 2 2 2 2 2 2 2 2 2 5538400000 3802000000 1736400000 20787 1324 19107 107825;107826;107827;107828;107829;107830;107831 130720;130721;130722;130723;130724;130725;130726 130723 7 VLTAEELNAAQTSVAYGCIK Unmodified 2137.0725 0.072519601 1218 P54136;P54136-2 RARS Arginine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 2 3 72.789 72.864 2;3 4.3112E-62 25293 20211116_3446_TMUAki_TMT10x_S_F7 232.37 207.52 15565000 27941000 184390 25021000 18865000 22548000 18737000 14297000 13216000 16935000 20750000 14493000 26061000 1395300 25695000 18089000 22938000 18842000 15031000 13954000 16431000 19783000 4 4 3 4 4 4 4 4 4 4 4 6008500 9421000 11041 9533600 5709700 10573000 7002700 5360300 4757800 5725400 7369900 5593700 8791200 391070 9733400 5500500 10590000 6966100 5724000 5031200 5576700 7028600 2 2 1 2 2 2 2 2 2 2 2 9556000 18520000 173350 15488000 13155000 11975000 11734000 8936600 8458300 11209000 13380000 8898900 17270000 1004200 15962000 12588000 12348000 11876000 9307500 8922900 10854000 12755000 2 2 2 2 2 2 2 2 2 2 2 3181300000 1566000000 1615300000 20788 1218 19108 107832;107833;107834;107835;107836 130727;130728;130729;130730;130731;130732;130733 130732 7 VLTEDEMGHPEIGDAIAR Oxidation (M) 1967.9259 0.92585536 667 P14324;P14324-2 FDPS Farnesyl pyrophosphate synthase yes no 0 0 1 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 47.478 47.394 3 1.319E-23 14951 20211116_3430_TMUAki_TMT10x_P_F3 164.63 158.46 18997000 32629000 745560 33294000 31048000 31295000 19096000 30332000 37526000 26636000 28661000 17693000 30449000 1901800 33889000 29511000 31983000 20565000 30777000 37055000 26166000 27923000 8 8 5 8 8 8 8 8 8 8 8 9401500 16025000 663230 15158000 24049000 23216000 13173000 13251000 19875000 12816000 13851000 8758600 14950000 1327900 15645000 22826000 22930000 14138000 13963000 19713000 12535000 13548000 4 4 3 4 4 4 4 4 4 4 4 9595600 16604000 82330 18136000 6998600 8079200 5923200 17081000 17651000 13820000 14810000 8934600 15499000 573910 18244000 6684700 9053100 6427400 16815000 17343000 13631000 14375000 4 4 2 4 4 4 4 4 4 4 4 12638000000 7916000000 4721500000 20789 667 19109 107837;107838;107839;107840;107841;107842;107843;107844 130734;130735;130736;130737;130738;130739;130740;130741 130736 730 8 VLTEDEMGHPEIGDAIAR Unmodified 1951.9309 0.93094074 667 P14324;P14324-2 FDPS Farnesyl pyrophosphate synthase yes no 0 0 0 0 By MS/MS By MS/MS 2.67 1.15 2 2 2 3 5 4 53.887 53.708 3 3.777E-59 18587 20211116_3441_TMUAki_TMT10x_S_F3 256.71 232.43 24288000 39127000 383550 44904000 30514000 31604000 25115000 25468000 22053000 24185000 30839000 22617000 36531000 2419300 45203000 29143000 32879000 25663000 26166000 22881000 23673000 29477000 11 11 8 11 11 11 11 11 11 11 11 10649000 15667000 136220 19032000 17337000 20036000 13992000 10891000 9191800 10463000 12843000 9916100 14631000 1102500 19193000 16547000 20143000 14219000 11522000 9690700 10236000 12276000 4 4 3 4 4 4 4 4 4 4 4 13640000 23460000 247320 25873000 13177000 11569000 11123000 14577000 12861000 13722000 17996000 12701000 21899000 1316800 26010000 12596000 12735000 11444000 14644000 13190000 13437000 17201000 7 7 5 7 7 7 7 7 7 7 7 6252900000 3088800000 3164100000 20790 667 19109 107845;107846;107847;107848;107849;107850;107851;107852;107853 130742;130743;130744;130745;130746;130747;130748;130749;130750;130751;130752;130753;130754 130752 13 VLTEIIASR Unmodified 1000.5917 0.59169534 564 P08758 ANXA5 Annexin A5 yes yes 0 0 0 0 By MS/MS By MS/MS 6.33 0.745 1 2 3 3 3 59.678 60.01 2 7.8027E-05 19856 20211116_3446_TMUAki_TMT10x_S_F7 142.04 116.87 57689000 97729000 160540 98817000 76886000 100900000 67852000 70934000 63438000 67320000 74021000 53709000 91196000 4462200 100760000 73457000 101990000 69161000 73525000 65106000 65897000 71078000 7 7 3 7 7 7 7 7 7 7 7 36238000 60515000 105170 61340000 51629000 79094000 46482000 43874000 37382000 41223000 45162000 33737000 56470000 2752500 62784000 49344000 78690000 47136000 46306000 38704000 40369000 43326000 4 4 1 4 4 4 4 4 4 4 4 21451000 37214000 55370 37477000 25257000 21810000 21370000 27060000 26056000 26097000 28859000 19972000 34726000 1709800 37979000 24112000 23303000 22025000 27219000 26402000 25528000 27753000 3 3 2 3 3 3 3 3 3 3 3 3654100000 1867200000 1786900000 20791 564 19110 107854;107855;107856;107857;107858;107859 130755;130756;130757;130758;130759;130760 130759 6 VLTELLEQER Unmodified 1228.6663 0.66631685 1632 Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;Q13428-6;Q13428-7 TCOF1 Treacle protein yes no 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 69.319 69.066 2 3.3208E-05 23353 20211116_3429_TMUAki_TMT10x_P_F2 135.72 104.45 33258000 52825000 182240 54775000 39460000 50519000 40182000 24203000 24231000 27290000 36907000 30966000 49299000 2760300 55678000 37849000 51137000 40227000 26028000 25799000 26526000 35210000 5 5 3 5 5 5 5 5 5 5 5 29472000 45986000 63242 48485000 35606000 45965000 36168000 20061000 19540000 22555000 31552000 27440000 42919000 2334500 49249000 34142000 46400000 36143000 21779000 21033000 21926000 30065000 4 4 2 4 4 4 4 4 4 4 4 3786100 6838900 119000 6289800 3854100 4553800 4014100 4141500 4691000 4735200 5354700 3526100 6379400 425750 6429500 3706700 4737000 4084200 4249400 4766200 4600200 5145000 1 1 1 1 1 1 1 1 1 1 1 1588600000 1287300000 301360000 20792 1632 19111 107860;107861;107862;107863;107864 130761;130762;130763;130764;130765;130766 130762 6 VLTFDLTKYPDANPNPNEQ Unmodified 2175.0484 0.048413341 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 1 By MS/MS By MS/MS 6 1.22 1 2 2 2 1 5 3 74.107 74.153 3 2.7888E-08 25782 20211116_3446_TMUAki_TMT10x_S_F7 106.67 98.674 30038000 52099000 494720 47300000 34064000 52803000 34878000 35281000 33797000 35179000 37274000 27971000 48596000 2866600 48675000 32704000 53059000 35302000 36753000 34553000 34362000 35850000 9 9 8 9 9 9 9 9 9 9 9 17514000 30452000 315620 28145000 18572000 37773000 20149000 20306000 19765000 20101000 21005000 16308000 28407000 1619800 29019000 17857000 37494000 20344000 21521000 20168000 19640000 20224000 5 5 4 5 5 5 5 5 5 5 5 12524000 21647000 179110 19156000 15492000 15030000 14729000 14975000 14032000 15077000 16269000 11663000 20189000 1246800 19656000 14846000 15565000 14958000 15232000 14385000 14721000 15625000 4 4 4 4 4 4 4 4 4 4 4 5244600000 2452800000 2791800000 20793 1723 19112 107865;107866;107867;107868;107869;107870;107871;107872 130767;130768;130769;130770;130771;130772;130773;130774;130775;130776;130777 130777 11 VLTIDPTEFK Unmodified 1161.6281 0.62814043 1207 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 By MS/MS 6 0 1 1 72.25 72.194 2 2.7578E-07 22563 20211116_3434_TMUAki_TMT10x_P_F6 117.31 90.928 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20794 1207 19113 107873 130778 130778 1 VLTLSDDLER Unmodified 1159.6085 0.60846762 1231 P55010 EIF5 Eukaryotic translation initiation factor 5 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.957 1 2 2 1 3 3 57.749 57.453 2 1.4133E-07 17887 20211116_3442_TMUAki_TMT10x_S_F4 121.8 91.128 18909000 31429000 79467 31337000 31822000 39465000 24254000 27462000 27994000 23677000 27638000 17607000 29326000 1798900 32096000 30325000 39433000 25114000 28414000 28303000 23280000 26672000 4 4 3 4 4 4 4 4 4 4 4 14465000 23411000 66618 23582000 26658000 35330000 19995000 20947000 21246000 18007000 21319000 13469000 21846000 1408400 24221000 25396000 34944000 20669000 21936000 21562000 17708000 20564000 3 3 2 3 3 3 3 3 3 3 3 4444500 8017800 12849 7754200 5164100 4134700 4259900 6514600 6747900 5669800 6318400 4138400 7480500 390540 7875000 4929600 4488900 4445300 6478200 6740800 5572200 6108400 1 1 1 1 1 1 1 1 1 1 1 1593300000 1277700000 315620000 20795 1231 19114 107874;107875;107876;107877;107878;107879 130779;130780;130781;130782;130783;130784;130785 130785 7 VLTPEEQLADK Unmodified 1241.6503 0.65033243 360 O75822;O75822-2;O75822-3 EIF3J Eukaryotic translation initiation factor 3 subunit J yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 52.297 52.463 2;3 0.00017723 17137 20211116_3430_TMUAki_TMT10x_P_F3 89.266 49.265 1819700 3025300 33708 3463900 4259900 4146700 2494000 2279400 2405000 2168700 2626200 1694600 2824600 216460 3513000 4042300 4140300 2619400 2408500 2458400 2122600 2526500 1 1 1 1 1 1 1 1 1 1 1 1819700 3025300 33708 3463900 4259900 4146700 2494000 2279400 2405000 2168700 2626200 1694600 2824600 216460 3513000 4042300 4140300 2619400 2408500 2458400 2122600 2526500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 191530000 191530000 0 20796 360 19115 107880;107881;107882 130786;130787;130788 130786 3 VLTPEEQLADKLR Unmodified 1510.8355 0.83550744 360 O75822;O75822-2;O75822-3 EIF3J Eukaryotic translation initiation factor 3 subunit J yes no 0 0 0 1 By MS/MS By MS/MS 5 0.894 2 1 2 3 2 59.279 59.333 3 3.7922E-19 18404 20211116_3433_TMUAki_TMT10x_P_F5 185.95 153.47 25433000 47119000 444500 37138000 50800000 87568000 42404000 94689000 78794000 73393000 59206000 23684000 43929000 2853500 39346000 48524000 86257000 44578000 95276000 77871000 72557000 57720000 9 9 8 9 9 9 9 9 9 9 9 14031000 25132000 278910 20777000 30145000 66115000 29443000 50536000 42250000 39333000 31696000 13066000 23435000 1624200 22182000 28902000 64207000 30299000 51833000 42047000 38876000 30903000 5 5 4 5 5 5 5 5 5 5 5 11402000 21987000 165590 16361000 20656000 21453000 12961000 44153000 36543000 34060000 27509000 10618000 20495000 1229200 17164000 19622000 22051000 14279000 43444000 35824000 33680000 26817000 4 4 4 4 4 4 4 4 4 4 4 3089400000 1757800000 1331600000 20797 360 19116 107883;107884;107885;107886;107887 130789;130790;130791;130792;130793;130794;130795;130796;130797 130791 9 VLTPELYAELR Unmodified 1302.7184 0.71835242 642 P12277 CKB Creatine kinase B-type yes yes 0 0 0 0 By MS/MS By MS/MS 4.05 1.86 3 2 3 3 5 3 2 9 12 67.785 67.749 2;3 1.1341E-18 20725 20211116_3444_TMUAki_TMT10x_S_F5 225.87 150.65 125610000 205490000 1286300 203060000 149430000 180760000 143230000 136780000 129790000 133760000 151970000 116960000 191730000 11501000 206990000 143170000 184540000 145190000 141200000 133410000 130760000 145910000 18 18 11 18 18 18 18 18 18 18 18 58962000 91694000 583390 92537000 62361000 107820000 69162000 60754000 57832000 58787000 68209000 54902000 85564000 5205700 94572000 59983000 107840000 69448000 64087000 59698000 57495000 65477000 8 8 5 8 8 8 8 8 8 8 8 66648000 113790000 702870 110520000 87066000 72945000 74068000 76029000 71954000 74973000 83758000 62060000 106170000 6295700 112420000 83187000 76699000 75744000 77114000 73712000 73266000 80433000 10 10 6 10 10 10 10 10 10 10 10 42542000000 20931000000 21611000000 20798 642 19117 107888;107889;107890;107891;107892;107893;107894;107895;107896;107897;107898;107899;107900;107901;107902;107903;107904;107905;107906;107907;107908 130798;130799;130800;130801;130802;130803;130804;130805;130806;130807;130808;130809;130810;130811;130812;130813;130814;130815;130816;130817;130818;130819;130820;130821;130822;130823;130824 130818 27 VLTPTQVK Unmodified 884.53312 0.53311783 867 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 2 3 42.281 42.573 2 0.00047912 10501 20211116_3447_TMUAki_TMT10x_S_F8 160.54 81.392 7366700 11922000 17699 12562000 11232000 12580000 9262000 8264900 9015700 7433300 9414600 6858900 11127000 634410 12771000 10718000 12717000 9490200 8596000 9196900 7294000 9069500 4 4 1 4 4 4 4 4 4 4 4 4828600 7669500 17699 8070600 8744800 10547000 6687600 5499600 6060400 4910100 6050500 4495800 7158000 440860 8242100 8332300 10479000 6871700 5828700 6192500 4819700 5837000 2 2 1 2 2 2 2 2 2 2 2 2538100 4252900 0 4491800 2486700 2032600 2574400 2765200 2955300 2523200 3364000 2363100 3969300 193550 4528700 2385500 2238800 2618500 2767300 3004400 2474200 3232500 2 2 0 2 2 2 2 2 2 2 2 719940000 387010000 332940000 20799 867 19118 107909;107910;107911;107912;107913 130825;130826;130827;130828 130828 4 VLTSGIFETK Unmodified 1093.6019 0.60192568 1393 P63092;Q5JWF2;P63092-4;Q5JWF2-2;P63092-3;P63092-2 GNAS Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 63.196 63.57 2 1.5339E-12 19662 20211116_3436_TMUAki_TMT10x_P_F8 191.45 136.67 26575000 43158000 211300 49496000 38507000 39671000 29980000 38542000 38830000 34973000 38029000 24745000 40295000 2492500 49900000 36716000 40995000 31129000 39137000 39087000 34303000 36710000 4 4 2 4 4 4 4 4 4 4 4 8562300 13941000 0 15932000 17585000 20683000 11735000 12861000 13439000 11625000 11308000 7972200 13016000 808200 16184000 16712000 20602000 12262000 13434000 13522000 11404000 10975000 1 1 0 1 1 1 1 1 1 1 1 18013000 29217000 211300 33564000 20923000 18988000 18245000 25681000 25391000 23348000 26721000 16773000 27279000 1684300 33716000 20004000 20393000 18868000 25703000 25565000 22899000 25735000 3 3 2 3 3 3 3 3 3 3 3 2020600000 1086300000 934330000 20800 1393 19119 107914;107915;107916;107917 130829;130830;130831;130832;130833 130830 5 VLTVINQTQK Unmodified 1142.6659 0.66592292 1020 P42766 RPL35 60S ribosomal protein L35 yes yes 0 0 0 0 By MS/MS By MS/MS 3.46 3.05 5 4 4 7 6 52.303 52.16 2;3 6.9391E-44 16977 20211116_3439_TMUAki_TMT10x_S_F1 310.5 188.37 15588000 25082000 7185.1 25551000 21689000 20635000 16562000 15960000 17654000 15644000 19920000 14512000 23406000 1199300 25960000 20656000 21219000 17101000 16454000 17993000 15292000 19146000 7 7 1 7 7 7 7 7 7 7 7 7306600 11416000 0 11514000 13727000 13633000 8029200 7420000 8274100 7211700 8961700 6802400 10653000 601470 11771000 13013000 13618000 8449900 7851500 8431100 7051900 8623700 3 3 0 3 3 3 3 3 3 3 3 8281100 13666000 7185.1 14038000 7961500 7001800 8532400 8540000 9380000 8432100 10959000 7709900 12753000 597840 14189000 7642700 7601500 8651200 8602100 9561400 8239700 10523000 4 4 1 4 4 4 4 4 4 4 4 2295000000 950160000 1344900000 20801 1020 19120 107918;107919;107920;107921;107922;107923;107924;107925;107926;107927;107928;107929;107930 130834;130835;130836;130837;130838;130839;130840;130841;130842;130843;130844;130845 130842 12 VLVAQHDVYK Unmodified 1170.6397 0.63970816 659 P13804;P13804-2 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 38.917 38.922 3 0.036262 9027 20211116_3434_TMUAki_TMT10x_P_F6 45.908 29.191 1447100 2869300 0 2358500 6796500 8936400 3349000 6182200 5967000 5422600 3449200 1347100 2675400 155480 2540500 6427600 8636200 3658400 6401900 5866500 5327300 3405300 1 1 0 1 1 1 1 1 1 1 1 1447100 2869300 0 2358500 6796500 8936400 3349000 6182200 5967000 5422600 3449200 1347100 2675400 155480 2540500 6427600 8636200 3658400 6401900 5866500 5327300 3405300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 48823000 48823000 0 20802 659 19121 107931;107932 130846;130847 130846 2 VLVASATMDTAR Oxidation (M) 1249.6336 0.63363651 257 O60231 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 yes yes 0 0 1 0 By MS/MS By MS/MS 6 0 2 1 1 36.906 36.986 2 0.00011272 8454 20211116_3434_TMUAki_TMT10x_P_F6 100.02 73.055 726260 1260100 552.76 1332800 1437600 1477100 930360 1013000 1056500 870280 972760 676140 1176100 60838 1356700 1365100 1485400 974130 1049100 1066300 855840 940980 3 3 1 3 3 3 3 3 3 3 3 670890 1153100 552.76 1205300 1363300 1432900 875640 937350 967240 791590 871180 624600 1076200 56556 1229400 1294300 1434600 916530 973680 976580 779120 843370 2 2 1 2 2 2 2 2 2 2 2 55362 106940 0 127500 74348 44155 54718 75652 89292 78683 101580 51543 99864 4282 127370 70758 50831 57600 75419 89762 76721 97609 1 1 0 1 1 1 1 1 1 1 1 28849000 21574000 7274800 20803 257 19122 107933;107934 130848;130849;130850 130849 204 3 VLVATNVAAR Unmodified 1012.6029 0.60292873 2621 Q9BQ39 DDX50 ATP-dependent RNA helicase DDX50 yes yes 0 0 0 0 By MS/MS 1.33 0.471 2 1 3 40.693 40.648 2 9.1901E-09 12316 20211116_3439_TMUAki_TMT10x_S_F1 139.78 101.01 414940 696390 13038 751190 407730 348940 387250 589690 554720 485400 580110 386450 650020 46452 756450 391230 385700 399060 584290 557900 478370 558830 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 414940 696390 13038 751190 407730 348940 387250 589690 554720 485400 580110 386450 650020 46452 756450 391230 385700 399060 584290 557900 478370 558830 1 1 1 1 1 1 1 1 1 1 1 62211000 0 62211000 20804 2621 19123 107935;107936;107937 130851;130852 130851 2 VLVAVKR Unmodified 783.53306 0.53305825 968 P38117 ETFB Electron transfer flavoprotein subunit beta yes yes 0 0 0 1 By MS/MS 4 0 1 1 36.524 36.551 3 0.0089425 8989 20211116_3431_TMUAki_TMT10x_P_F4 80.555 9.1772 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20805 968 19124 107938 130853 130853 1 VLVDGEEHVGFLK Unmodified 1440.7613 0.76127986 2886 Q9NPA0 EMC7 ER membrane protein complex subunit 7 yes yes 0 0 0 0 By MS/MS By MS/MS 3.75 0.829 2 1 1 2 2 59.007 58.9 3 0.00013671 17161 20211116_3444_TMUAki_TMT10x_S_F5 86.772 70.882 12093000 19226000 4674.4 20527000 14311000 16127000 12470000 14370000 14014000 13940000 15451000 11260000 17945000 1000500 20784000 13674000 16661000 12793000 14686000 14241000 13632000 14860000 3 3 1 3 3 3 3 3 3 3 3 4659500 7199900 4674.4 7754800 6579800 9215600 5889700 5090400 5185600 4871000 5689500 4338500 6720300 417560 7893800 6292000 9205400 5988400 5377200 5324100 4766300 5472900 1 1 1 1 1 1 1 1 1 1 1 7433600 12026000 0 12773000 7731600 6911900 6579900 9279400 8828700 9068600 9761300 6921200 11224000 582960 12890000 7382000 7456100 6804100 9308800 8916400 8865500 9387500 2 2 0 2 2 2 2 2 2 2 2 1115700000 659710000 455950000 20806 2886 19125 107939;107940;107941;107942 130854;130855;130856 130856 3 VLVDQTTGLSR Unmodified 1187.651 0.65100113 1825 Q15717;Q15717-2 ELAVL1 ELAV-like protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 44.759 44.896 2 5.1646E-15 11686 20211116_3445_TMUAki_TMT10x_S_F6 197.21 141.31 10332000 16398000 14301 20722000 18189000 15744000 11439000 15147000 16095000 11638000 15612000 9619800 15317000 970330 20760000 17271000 16333000 12100000 15326000 16153000 11511000 15075000 5 5 2 5 5 5 5 5 5 5 5 4454000 6873700 7892.7 8754100 12811000 11193000 6120700 6572000 6615100 5099400 6593600 4147100 6420900 490420 8834200 12116000 11148000 6573600 6871100 6707400 5041000 6361300 2 2 1 2 2 2 2 2 2 2 2 5877600 9523800 6408.3 11968000 5378200 4551200 5318500 8575200 9480300 6538800 9018500 5472700 8895900 479900 11926000 5155300 5184400 5526800 8454600 9446100 6470000 8714100 3 3 1 3 3 3 3 3 3 3 3 1137500000 606390000 531150000 20807 1825 19126 107943;107944;107945;107946;107947;107948 130857;130858;130859;130860;130861 130861 5 VLVDVER Unmodified 828.47052 0.47051757 560 P08621;P08621-2;P08621-4 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 42.202 42.144 2 0.0025497 13908 20211116_3441_TMUAki_TMT10x_S_F3 124.59 21.821 11128000 16638000 27362 17561000 14125000 15605000 11261000 12630000 12354000 11225000 13593000 10361000 15528000 896480 17821000 13467000 15951000 11606000 12949000 12564000 11021000 13074000 6 6 2 6 6 6 6 6 6 6 6 6376000 9149900 10125 9818800 9456500 11529000 7039600 7137600 6909000 6232200 7708200 5936000 8540400 495380 9995100 9001600 11541000 7262900 7451500 7062800 6124000 7411100 3 3 1 3 3 3 3 3 3 3 3 4752300 7488000 17237 7742200 4668700 4075700 4221500 5492000 5444600 4992700 5884400 4424900 6988100 401100 7825600 4465800 4410000 4343300 5497400 5501100 4896700 5662900 3 3 1 3 3 3 3 3 3 3 3 1809200000 927760000 881480000 20808 560 19127 107949;107950;107951;107952;107953;107954;107955;107956 130862;130863;130864;130865;130866;130867;130868 130868 7 VLVEATYNPNMPFK Oxidation (M) 1637.8123 0.81232916 2152 Q8IX12;Q8IX12-2 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 0 0 1 0 By MS/MS By MS/MS 7.5 0.5 2 2 3 1 63.141 63.474 2;3 4.8955E-07 19612 20211116_3436_TMUAki_TMT10x_P_F8 101.6 86.056 2877400 5115000 0 4583700 3967900 4515000 3295800 4856100 4700800 4291500 4463100 2678700 4770800 195320 4712600 3783900 4611500 3421700 4903200 4712400 4214600 4312800 2 2 0 2 2 2 2 2 2 2 2 800280 1374700 0 1132800 1124400 2112400 999810 1666400 1692800 1505700 1359500 745090 1281900 65168 1187300 1074600 2081500 1042100 1712000 1679900 1477100 1321800 1 1 0 1 1 1 1 1 1 1 1 2077100 3740200 0 3450900 2843500 2402700 2296000 3189600 3008100 2785800 3103600 1933600 3488900 130160 3525300 2709300 2530000 2379600 3191200 3032400 2737400 2991000 1 1 0 1 1 1 1 1 1 1 1 967980000 340870000 627120000 20809 2152 19128 107957;107958;107959;107960 130869;130870;130871;130872 130871 2614 4 VLVEDTK Unmodified 802.44363 0.44363412 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 40.24 40.293 2 0.034964 11992 20211116_3430_TMUAki_TMT10x_P_F3 77.282 31.565 402420 626610 9526.6 692240 697150 754350 494760 334610 368450 364120 536720 374770 584940 46370 702490 663950 755220 508530 362270 386330 354400 512550 1 1 1 1 1 1 1 1 1 1 1 402420 626610 9526.6 692240 697150 754350 494760 334610 368450 364120 536720 374770 584940 46370 702490 663950 755220 508530 362270 386330 354400 512550 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6555700 6555700 0 20810 3293 19129 107961 130873 130873 1 VLVEGPLNNLR Unmodified 1222.7034 0.70337105 2376 Q92900;Q92900-2 UPF1 Regulator of nonsense transcripts 1 yes no 0 0 0 0 By MS/MS By matching 7 0 2 1 1 58.664 59.287 2 0.0045929 19099 20211116_3435_TMUAki_TMT10x_P_F7 74.165 60.17 6072400 9497600 447530 10195000 7559700 14127000 8191300 8715000 7741700 8063500 8475700 5657400 8864900 941360 10410000 7291600 14027000 8261800 9114400 7921600 7902100 8153500 1 1 1 1 1 1 1 1 1 1 1 6072400 9497600 447530 10195000 7559700 14127000 8191300 8715000 7741700 8063500 8475700 5657400 8864900 941360 10410000 7291600 14027000 8261800 9114400 7921600 7902100 8153500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 649020000 431950000 217070000 20811 2376 19130 107962;107963 130874 130874 1 VLVFVMGK Unmodified 891.5252 0.52519568 920 P35080 PFN2 Profilin-2 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 75.735 75.745 2 0.00088231 24103 20211116_3444_TMUAki_TMT10x_S_F5 132.22 104.69 4982600 7956700 0 7826300 6247600 4258100 5055100 3489200 3119600 3886600 5216000 4638200 7424000 300450 7940000 5952000 4540700 5130000 3598300 3332700 3779500 4966800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4982600 7956700 0 7826300 6247600 4258100 5055100 3489200 3119600 3886600 5216000 4638200 7424000 300450 7940000 5952000 4540700 5130000 3598300 3332700 3779500 4966800 1 1 0 1 1 1 1 1 1 1 1 180710000 0 180710000 20812 920 19131 107964;107965 130875;130876 130876 2 VLVHRPHGPELDADPYDPGEEDPAQSR Unmodified 2995.406 0.40602642 2694 Q9BVI4 NOC4L Nucleolar complex protein 4 homolog yes yes 0 0 0 1 By MS/MS By MS/MS 2.86 0.833 3 2 2 3 4 42.186 42.059 4;5 5.9095E-33 13886 20211116_3441_TMUAki_TMT10x_S_F3 168.54 162.31 4489000 7564300 77168 8558500 7092900 7417800 4637100 6799900 7192000 5815600 6776100 4180100 7062000 463690 8643800 6742800 7613200 4911100 6915400 7190000 5720300 6549500 10 10 8 10 10 10 10 10 10 10 10 2142700 3382200 34711 4095200 4901900 5441800 2812000 3109900 3329900 2579500 3117500 1995300 3158600 248640 4147600 4649700 5408300 2977600 3263700 3357400 2541200 3013900 3 3 3 3 3 3 3 3 3 3 3 2346300 4182200 42458 4463300 2191000 1976000 1825100 3690000 3862100 3236000 3658600 2184800 3903400 215050 4496200 2093100 2204900 1933500 3651600 3832700 3179200 3535600 7 7 5 7 7 7 7 7 7 7 7 1129700000 651600000 478100000 20813 2694 19132 107966;107967;107968;107969;107970;107971;107972 130877;130878;130879;130880;130881;130882;130883;130884;130885;130886 130883 10 VLVLVPTR Unmodified 895.58549 0.58548775 2476 Q96GQ7 DDX27 Probable ATP-dependent RNA helicase DDX27 yes yes 0 0 0 0 By MS/MS 3 0 1 1 56.985 56.59 2 0.024245 19835 20211116_3441_TMUAki_TMT10x_S_F3 67.981 41.019 6846100 11223000 0 12084000 7146900 5905200 6258700 9126900 8641000 8011600 9137500 6372800 10476000 380070 12175000 6818000 6469400 6468700 9083600 8704100 7870500 8799200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6846100 11223000 0 12084000 7146900 5905200 6258700 9126900 8641000 8011600 9137500 6372800 10476000 380070 12175000 6818000 6469400 6468700 9083600 8704100 7870500 8799200 1 1 0 1 1 1 1 1 1 1 1 229290000 0 229290000 20814 2476 19133 107973 130887 130887 1 VLVMANDPNYLHR Oxidation (M) 1556.7769 0.7769467 870 P30154;P30154-2;P30154-4;P30154-5;P30154-3 PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform yes no 0 0 1 0 By MS/MS 6 0 1 1 41.854 42.019 3 0.00056214 10563 20211116_3445_TMUAki_TMT10x_S_F6 72.705 58.031 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20815 870 19134 107974 130888 130888 1045 1 VLVNDAQK Unmodified 885.49198 0.4919813 1615 Q13263;Q13263-2 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 37.393 37.532 2 0.0010722 9464 20211116_3442_TMUAki_TMT10x_S_F4 128.69 63.649 1578500 2845900 0 2910100 1604500 1201100 1386600 1887200 2305500 1730800 2337500 1469600 2655700 115390 2938700 1531900 1344500 1446300 1879500 2306400 1696800 2253900 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1578500 2845900 0 2910100 1604500 1201100 1386600 1887200 2305500 1730800 2337500 1469600 2655700 115390 2938700 1531900 1344500 1446300 1879500 2306400 1696800 2253900 2 2 0 2 2 2 2 2 2 2 2 90514000 0 90514000 20816 1615 19135 107975;107976 130889;130890 130889 2 VLVNDAQKVTEGQQER Unmodified 1812.933 0.93298965 1615 Q13263;Q13263-2 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 41.799 41.944 3 3.6725E-07 11466 20211116_3433_TMUAki_TMT10x_P_F5 104.61 77.801 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20817 1615 19136 107977;107978 130891;130892 130891 2 VLVPATDR Unmodified 869.49707 0.49706667 1272 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 1.11 2 1 2 1 5 1 33.729 33.763 2 0.0027005 8356 20211116_3444_TMUAki_TMT10x_S_F5 106.36 72.806 2491400 4133500 23927 4289700 4121200 4350900 3315800 3355500 3079200 2790100 3646600 2319900 3857600 251680 4366100 3932800 4406300 3398200 3445000 3163100 2748200 3500200 4 4 4 4 4 4 4 4 4 4 4 1695300 2789900 15568 2857100 3445100 3642100 2397500 2531500 2192900 1988800 2541900 1578600 2603500 179570 2921700 3278000 3637000 2480400 2613700 2252200 1964700 2441300 3 3 3 3 3 3 3 3 3 3 3 796040 1343600 8358.9 1432600 676110 708760 918310 824030 886330 801260 1104800 741260 1254100 72108 1444400 654880 769280 917830 831320 910840 783490 1059000 1 1 1 1 1 1 1 1 1 1 1 153500000 89512000 63987000 20818 1272 19137 107979;107980;107981;107982;107983;107984 130893;130894;130895;130896;130897;130898 130898 6 VLVPGGR Unmodified 696.42826 0.42825883 601 P0DPD7 yes yes 0 0 0 0 By MS/MS 8 0 1 1 33.968 34.545 2 0.089314 7186 20211116_3447_TMUAki_TMT10x_S_F8 60.404 36.608 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20819 601 19138 107985 130899 130899 1 VLVPGIPGHHAAIKPAPPQTEQVESK Unmodified 2699.4759 0.47588431 1767 Q15061 WDR43 WD repeat-containing protein 43 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 46.018 45.98 5 3.51E-12 11982 20211116_3447_TMUAki_TMT10x_S_F8 113.26 105.46 10267000 17671000 77573 20458000 10783000 10208000 7617500 19000000 18505000 15755000 16506000 9559300 16499000 872490 20520000 10261000 11229000 8229300 18777000 18278000 15521000 15984000 5 5 2 5 5 5 5 5 5 5 5 1147300 1799300 26470 1999900 2229700 2714300 1563100 1647900 1630200 1415700 1448800 1068500 1679700 134950 2036800 2122800 2697200 1622500 1722300 1649100 1392200 1403300 1 1 1 1 1 1 1 1 1 1 1 9119300 15872000 51104 18458000 8553400 7493900 6054400 17352000 16875000 14339000 15057000 8490900 14819000 737540 18483000 8137900 8532100 6606900 17055000 16629000 14129000 14581000 4 4 1 4 4 4 4 4 4 4 4 2190700000 1400200000 790440000 20820 1767 19139 107986;107987;107988;107989 130900;130901;130902;130903;130904 130904 5 VLVQNAAGSQEK Unmodified 1242.6568 0.65681479 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS 6 0 1 1 37.173 37.168 3 0.013216 8332 20211116_3434_TMUAki_TMT10x_P_F6 61.212 43.886 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20821 3293 19140 107990 130905 130905 1 VLVSGLPPSGSWQDLK Unmodified 1681.9039 0.90392136 1611 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 yes yes 0 0 0 0 By MS/MS By MS/MS 4.75 3.27 1 1 2 2 2 75.349 75.356 3 5.0986E-15 24367 20211116_3428_TMUAki_TMT10x_P_F1 141.85 118.48 7242000 11223000 214760 11635000 7665700 12660000 8993600 5908400 5487400 6959100 8793800 6744600 10474000 806490 11856000 7396600 12682000 8944600 6379500 5853300 6753400 8380700 3 3 3 3 3 3 3 3 3 3 3 7242000 11223000 214760 11635000 7665700 12660000 8993600 5908400 5487400 6959100 8793800 6744600 10474000 806490 11856000 7396600 12682000 8944600 6379500 5853300 6753400 8380700 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1065100000 1065100000 0 20822 1611 19141 107991;107992;107993;107994 130906;130907;130908;130909;130910 130907 5 VLVTGATGLLGR Unmodified 1155.6976 0.69755739 3036 Q9NZL9;Q9NZL9-2;Q9NZL9-3;Q9NZL9-4;Q9NZL9-5 MAT2B Methionine adenosyltransferase 2 subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 62.454 62.243 2 3.0617E-19 19390 20211116_3431_TMUAki_TMT10x_P_F4 222.28 149.67 24702000 38761000 135520 39951000 30211000 39168000 28330000 32405000 30740000 31387000 33418000 23000000 36172000 2131400 40661000 28921000 39798000 28909000 33258000 31262000 30696000 32154000 6 6 2 6 6 6 6 6 6 6 6 13180000 20008000 0 20560000 16862000 27245000 16314000 16811000 16672000 15761000 17397000 12271000 18672000 1074500 21035000 16150000 27109000 16587000 17587000 16971000 15436000 16760000 3 3 0 3 3 3 3 3 3 3 3 11522000 18753000 135520 19392000 13349000 11922000 12016000 15595000 14068000 15626000 16020000 10728000 17501000 1057000 19626000 12771000 12689000 12322000 15671000 14291000 15260000 15394000 3 3 2 3 3 3 3 3 3 3 3 3248300000 1547500000 1700800000 20823 3036 19142 107995;107996;107997;107998;107999;108000 130911;130912;130913;130914;130915;130916 130913 6 VLVTTNVCAR Unmodified 1131.607 0.60702783 2959 Q9NUU7;Q9UMR2;Q9UMR2-2;Q9UMR2-4;Q9NUU7-2;Q9UMR2-3 DDX19A;DDX19B ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B yes no 0 0 0 0 By MS/MS By MS/MS 3.2 2.48 1 2 1 1 2 3 40.444 40.493 2 1.7317E-08 12317 20211116_3439_TMUAki_TMT10x_S_F1 171.46 150.56 2180700 3759400 34138 3758300 2691600 2098600 1897800 3161300 3178600 2523900 3212000 2030600 3507900 210860 3809400 2562400 2264100 2006200 3141500 3178800 2491200 3097500 4 4 3 4 4 4 4 4 4 4 4 354830 529770 8145.5 624060 791900 615740 422170 271430 253430 262690 454130 330440 494690 43130 629860 750510 620050 442340 293080 272330 256920 431870 1 1 1 1 1 1 1 1 1 1 1 1825800 3229700 25993 3134300 1899700 1482800 1475700 2889800 2925100 2261200 2757900 1700200 3013300 167730 3179500 1811900 1644100 1563900 2848400 2906500 2234300 2665600 3 3 2 3 3 3 3 3 3 3 3 175150000 10957000 164200000 20824 2959 19143 108001;108002;108003;108004;108005 130917;130918;130919;130920;130921 130919 5 VLVTVFR Unmodified 832.51707 0.51707383 407 O95163 IKBKAP Elongator complex protein 1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 59.057 58.647 2 0.086742 20664 20211116_3441_TMUAki_TMT10x_S_F3 60.799 46.813 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20825 407 19144 108006 130922 130922 1 VLVVGAGGIGCELLK Unmodified 1483.8432 0.84323535 3087 Q9UBT2 UBA2 SUMO-activating enzyme subunit 2 yes yes 0 0 0 0 By MS/MS By MS/MS 5 3.29 4 2 4 5 5 76.764 76.757 2;3 1.7948E-43 26926 20211116_3439_TMUAki_TMT10x_S_F1 265.12 219.96 52487000 85913000 693730 78835000 61204000 84055000 64087000 58846000 50418000 59192000 66898000 48874000 80139000 4897400 81003000 58785000 84741000 64432000 61113000 52474000 57796000 64024000 9 9 5 9 9 9 9 9 9 9 9 28358000 45505000 663960 42448000 29018000 57846000 35578000 31078000 27724000 33494000 35774000 26409000 42450000 2915100 43750000 28025000 57379000 35503000 33021000 28834000 32613000 34261000 5 5 3 5 5 5 5 5 5 5 5 24129000 40408000 29767 36387000 32186000 26208000 28508000 27768000 22694000 25697000 31124000 22466000 37690000 1982400 37252000 30760000 27362000 28929000 28092000 23641000 25183000 29763000 4 4 2 4 4 4 4 4 4 4 4 9660300000 5799200000 3861100000 20826 3087 19145 108007;108008;108009;108010;108011;108012;108013;108014;108015;108016 130923;130924;130925;130926;130927;130928;130929;130930;130931 130928 9 VLVVHDGFEGLAK Unmodified 1382.7558 0.75580056 552 P08237;P08237-3;P08237-2 PFKM ATP-dependent 6-phosphofructokinase, muscle type yes no 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 57.081 57.384 3 8.2406E-12 18808 20211116_3446_TMUAki_TMT10x_S_F7 148.13 131.9 27436000 47139000 50117 47232000 36281000 40110000 29478000 39003000 36368000 34197000 38388000 25546000 43986000 2392600 48072000 34616000 41276000 30470000 39567000 36768000 33596000 36969000 6 6 3 6 6 6 6 6 6 6 6 9102700 15196000 527.03 14909000 16802000 22027000 12200000 13875000 13197000 11974000 12865000 8475200 14179000 828810 15337000 15993000 21818000 12647000 14462000 13370000 11773000 12420000 2 2 1 2 2 2 2 2 2 2 2 18334000 31943000 49590 32323000 19479000 18083000 17278000 25127000 23171000 22223000 25524000 17071000 29808000 1563800 32735000 18624000 19458000 17823000 25105000 23398000 21824000 24549000 4 4 2 4 4 4 4 4 4 4 4 3643200000 1671500000 1971800000 20827 552 19146 108017;108018;108019;108020;108021;108022 130932;130933;130934;130935;130936;130937;130938 130938 7 VLVVSAK Unmodified 714.46398 0.46397563 2798 Q9H3K6;Q9H3K6-2 BOLA2 BolA-like protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 4 3.29 2 1 2 2 3 45.573 45.496 2 0.001289 12197 20211116_3428_TMUAki_TMT10x_P_F1 148.21 64.919 24611000 39267000 311110 41082000 34753000 32711000 28091000 23659000 21838000 22437000 31225000 22917000 36647000 2413900 41657000 33171000 33637000 28648000 24475000 22823000 21964000 29831000 6 6 5 6 6 6 6 6 6 6 6 12445000 19301000 164760 20369000 21055000 21522000 15775000 10373000 9550000 10214000 15240000 11588000 18013000 1247400 20722000 20062000 21603000 16085000 11105000 10190000 9982500 14525000 2 2 1 2 2 2 2 2 2 2 2 12166000 19966000 146350 20713000 13699000 11190000 12315000 13285000 12288000 12223000 15985000 11329000 18633000 1166500 20935000 13109000 12034000 12563000 13370000 12633000 11981000 15306000 4 4 4 4 4 4 4 4 4 4 4 1395600000 660560000 735030000 20828 2798 19147 108023;108024;108025;108026;108027 130939;130940;130941;130942;130943;130944;130945 130940 7 VLVYELLLGK Unmodified 1145.706 0.70599682 2528 Q96P11;Q96P11-2;Q96P11-4 NSUN5 Probable 28S rRNA (cytosine-C(5))-methyltransferase yes no 0 0 0 0 By MS/MS 3 0 1 1 80.88 80.842 2 3.2288E-05 29562 20211116_3441_TMUAki_TMT10x_S_F3 103.55 75.372 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20829 2528 19148 108028 130946 130946 1 VLVYGGR Unmodified 762.43882 0.43882351 573 P09417;P09417-2 QDPR Dihydropteridine reductase yes no 0 0 0 0 By MS/MS By MS/MS 5.43 2.87 2 1 2 2 3 4 38.375 38.644 2 0.0013109 9599 20211116_3428_TMUAki_TMT10x_P_F1 139.01 103.38 6250800 9828800 30837 10207000 9476200 9772800 7292000 7391500 7364200 6745300 8476100 5820100 9172800 562180 10379000 9031200 9929100 7513000 7616000 7528100 6614400 8142100 7 7 4 7 7 7 7 7 7 7 7 3416800 5391700 10158 5521800 6599500 7329200 4325900 4176000 4202100 3862000 4736600 3181300 5031500 315090 5651000 6270000 7284100 4503000 4395600 4299300 3784800 4552700 3 3 1 3 3 3 3 3 3 3 3 2834000 4437100 20679 4684800 2876600 2443600 2966000 3215500 3162100 2883200 3739500 2638900 4141200 247080 4728300 2761200 2645000 3010000 3220400 3228800 2829600 3589500 4 4 3 4 4 4 4 4 4 4 4 377150000 192820000 184330000 20830 573 19149 108029;108030;108031;108032;108033;108034;108035 130947;130948;130949;130950;130951;130952;130953 130947 7 VLVYNNTSIVQDEILAHR Unmodified 2083.1062 0.10620299 170 O15160;O15160-2 POLR1C DNA-directed RNA polymerases I and III subunit RPAC1 yes no 0 0 0 0 By MS/MS By MS/MS 5.75 0.829 2 1 1 2 2 64.181 64.824 3 8.2838E-41 21386 20211116_3435_TMUAki_TMT10x_P_F7 207.79 185.59 4361700 7726400 131630 6940300 5837700 10217000 6139300 6277100 5460000 6039000 5575700 4062200 7206600 504960 7184800 5613000 10118000 6190600 6573900 5588400 5907900 5375100 2 2 2 2 2 2 2 2 2 2 2 4361700 7726400 131630 6940300 5837700 10217000 6139300 6277100 5460000 6039000 5575700 4062200 7206600 504960 7184800 5613000 10118000 6190600 6573900 5588400 5907900 5375100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 875860000 875860000 0 20831 170 19150 108036;108037;108038;108039 130954;130955;130956;130957;130958 130955 5 VLYAYGYYTGEPSKR Unmodified 1765.8675 0.86753585 139 O14880 MGST3 Microsomal glutathione S-transferase 3 yes yes 0 0 0 1 By MS/MS 2 0 1 1 54.001 53.806 3 1.9067E-06 15863 20211116_3440_TMUAki_TMT10x_S_F2 91.812 72.489 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20832 139 19151 108040 130959 130959 1 VLYCGVCSLPTEYCEYMPDVAK Oxidation (M) 2669.1522 0.15216818 222 O43583 DENR Density-regulated protein yes yes 0 0 1 0 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 75.08 75.148 3 1.9814E-10 24157 20211116_3445_TMUAki_TMT10x_S_F6 105.38 93.297 12638000 21164000 82136 18283000 15117000 16645000 14722000 13581000 10738000 14271000 15681000 11766000 19737000 970270 18830000 14477000 16989000 14830000 13983000 11273000 13909000 14974000 7 7 3 7 7 7 7 7 7 7 7 2780500 3988600 0 3822800 2446300 4826600 3025400 2645100 2378700 2840800 3425900 2587900 3721200 104720 3926600 2352300 4806100 3018500 2805300 2485400 2766400 3272400 2 2 0 2 2 2 2 2 2 2 2 9857100 17175000 82136 14460000 12670000 11818000 11696000 10936000 8358900 11430000 12255000 9178000 16016000 865550 14904000 12125000 12183000 11812000 11178000 8788000 11143000 11701000 5 5 3 5 5 5 5 5 5 5 5 2673200000 842790000 1830400000 20833 222 19152 108041;108042;108043 130960;130961;130962;130963;130964;130965;130966 130962 175 7 VLYMDKENK Oxidation (M) 1154.5642 0.56415996 1951 Q5VVM6;Q5VVM6-2 CCDC30 Coiled-coil domain-containing protein 30 yes no 0 0 1 1 By MS/MS 2 0 1 1 77.521 77.49 3 0.049354 25436 20211116_3440_TMUAki_TMT10x_S_F2 48.796 8.5187 21378000 36024000 0 25948000 25333000 33176000 27892000 31726000 28417000 35513000 28071000 19901000 33576000 1392300 27291000 24326000 33319000 28174000 32444000 28875000 34528000 27090000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21378000 36024000 0 25948000 25333000 33176000 27892000 31726000 28417000 35513000 28071000 19901000 33576000 1392300 27291000 24326000 33319000 28174000 32444000 28875000 34528000 27090000 1 1 0 1 1 1 1 1 1 1 1 2246500000 0 2246500000 20834 1951 19153 108044 130967 130967 2531 1 VLYPNDNFFEGK Unmodified 1441.6878 0.68778057 620;521 P11216;P11217;P11217-2;P06737;P06737-2 PYGB;PYGM;PYGL Glycogen phosphorylase, brain form;Glycogen phosphorylase, muscle form;Glycogen phosphorylase, liver form no no 0 0 0 0 By MS/MS By MS/MS 6.2 0.748 2 4 4 5 5 69.692 69.802 2;3 4.3025E-17 23504 20211116_3435_TMUAki_TMT10x_P_F7 215.89 190.46 50974000 88243000 333580 85831000 62040000 76322000 60172000 64091000 59970000 62719000 68607000 47461000 82331000 4310500 87590000 59435000 78064000 61126000 65740000 61325000 61311000 65916000 12 12 6 12 12 12 12 12 12 12 12 21442000 34339000 0 34953000 25942000 44852000 27665000 26020000 25325000 25555000 27661000 19963000 32044000 1535300 35763000 24898000 44659000 27899000 27392000 25949000 24978000 26611000 5 5 0 5 5 5 5 5 5 5 5 29532000 53904000 333580 50878000 36098000 31470000 32507000 38072000 34646000 37164000 40947000 27499000 50287000 2775200 51828000 34537000 33405000 33227000 38348000 35376000 36333000 39305000 7 7 6 7 7 7 7 7 7 7 7 5992100000 2017400000 3974700000 20835 620;521 19154 108045;108046;108047;108048;108049;108050;108051;108052;108053;108054 130968;130969;130970;130971;130972;130973;130974;130975;130976;130977;130978;130979;130980;130981 130972 14 VLYTCFQSIQAQK Unmodified 1584.797 0.79701344 1049 P46736;P46736-2;P46736-3;P46736-5;P46736-4 BRCC3 Lys-63-specific deubiquitinase BRCC36 yes no 0 0 0 0 By MS/MS 3 0 1 1 66.165 65.875 3 0.00013671 22563 20211116_3430_TMUAki_TMT10x_P_F3 86.772 70.14 2218300 3921900 0 3949100 2529800 5239500 3219100 3110500 3019700 2792800 2666700 2065400 3659700 182510 4046100 2442700 5210200 3223100 3260500 3068300 2740700 2583400 1 1 0 1 1 1 1 1 1 1 1 2218300 3921900 0 3949100 2529800 5239500 3219100 3110500 3019700 2792800 2666700 2065400 3659700 182510 4046100 2442700 5210200 3223100 3260500 3068300 2740700 2583400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 271490000 271490000 0 20836 1049 19155 108055 130982 130982 1 VLYVQDSLEGEAR Unmodified 1477.7413 0.7412727 1070 P48147 PREP Prolyl endopeptidase yes yes 0 0 0 0 By MS/MS 2 0 1 1 56.874 56.624 2 2.808E-08 18290 20211116_3429_TMUAki_TMT10x_P_F2 118.31 101.73 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20837 1070 19156 108056 130983 130983 1 VMAGALEGDLFIGPK Unmodified 1516.796 0.79595081 1005 P42025 ACTR1B Beta-centractin yes yes 0 0 0 0 By MS/MS 6 0 1 1 77.804 77.784 3 0.00026892 25201 20211116_3445_TMUAki_TMT10x_S_F6 71.558 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20838 1005 19157 108057 130984 130984 1 VMATTGGTNLRDDIMR Oxidation (M) 1765.8451 0.84510262 810 P26196 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 0 0 1 1 By MS/MS By MS/MS 5.25 0.433 3 1 3 1 39.605 39.659 3 0.000333 10640 20211116_3433_TMUAki_TMT10x_P_F5 77.42 62.734 3195300 5370300 31114 6264700 5462500 5007900 3586500 4410000 4545000 3511900 4942900 2975200 5014400 311960 6309100 5191500 5165800 3765700 4487100 4595900 3466900 4755900 4 4 3 4 4 4 4 4 4 4 4 1438700 2318900 27180 2708700 4067200 3841600 2288400 2173900 2014000 1592200 2294300 1339800 2165300 181420 2752700 3856800 3806200 2405700 2277000 2070800 1579000 2204500 2 2 2 2 2 2 2 2 2 2 2 1756600 3051400 3934.5 3556000 1395300 1166400 1298100 2236100 2531000 1919700 2648600 1635500 2849200 130540 3556400 1334700 1359700 1360000 2210100 2525100 1887900 2551400 2 2 1 2 2 2 2 2 2 2 2 211120000 170440000 40682000 20839 810 19158 108058;108059;108060;108061 130985;130986;130987;130988;130989 130985 962;963 5 VMATTGGTNLRDDIMR Unmodified 1749.8502 0.850188 810 P26196 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 0 0 0 1 By MS/MS 6 0 1 1 46.678 46.842 3 0.00040897 12538 20211116_3445_TMUAki_TMT10x_S_F6 75.018 52.786 2153300 3697100 73828 4301200 2023600 1555700 1690300 2214300 2176500 2258600 2887800 2005500 3452100 245510 4304200 1936400 1769000 1747000 2219400 2218200 2204000 2763800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2153300 3697100 73828 4301200 2023600 1555700 1690300 2214300 2176500 2258600 2887800 2005500 3452100 245510 4304200 1936400 1769000 1747000 2219400 2218200 2204000 2763800 1 1 1 1 1 1 1 1 1 1 1 157500000 0 157500000 20840 810 19158 108062 130990 130990 1 VMDRPGNYVEPTIVTGLGHDASIAHTETFAPILYVFK Oxidation (M) 4074.0561 0.056088261 1098 P49419-2;P49419 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 0 0 1 1 By MS/MS By matching 8 0 2 1 1 77.868 77.846 5 6.3876E-07 25562 20211116_3436_TMUAki_TMT10x_P_F8 70.982 54.396 1943400 2915000 0 2604200 1412400 3787100 1720000 2140600 1950300 2131000 2187700 1809200 2718900 118470 2696400 1359700 3748100 1735700 2259200 1982400 2081600 2103000 1 1 0 1 1 1 1 1 1 1 1 1943400 2915000 0 2604200 1412400 3787100 1720000 2140600 1950300 2131000 2187700 1809200 2718900 118470 2696400 1359700 3748100 1735700 2259200 1982400 2081600 2103000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2157300000 1128400000 1028900000 20841 1098 19159 108063;108064 130991 130991 1462 1 VMEGTVAAQDEFYR Oxidation (M) 1630.7297 0.72972174 1000 P41240 CSK Tyrosine-protein kinase CSK yes yes 0 0 1 0 By MS/MS 2.5 0.5 1 1 2 46.416 46.269 3 0.00019624 14472 20211116_3430_TMUAki_TMT10x_P_F3 81.904 69.738 4248900 6879500 74999 7974600 11385000 12024000 6534000 6184800 6385300 5393300 6089500 3956700 6423400 522100 8118600 10799000 11868000 6876700 6559300 6492000 5300000 5883400 2 2 2 2 2 2 2 2 2 2 2 4248900 6879500 74999 7974600 11385000 12024000 6534000 6184800 6385300 5393300 6089500 3956700 6423400 522100 8118600 10799000 11868000 6876700 6559300 6492000 5300000 5883400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 288390000 288390000 0 20842 1000 19160 108065;108066 130992;130993 130993 1286 2 VMEHFIK Oxidation (M) 918.46332 0.4633237 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 1 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 35.631 35.693 3 0.010894 7666 20211116_3444_TMUAki_TMT10x_S_F5 80.229 34.511 5523600 8541900 42636 8309200 7863000 8130900 6590700 5764600 6447900 5888000 6895200 5143300 7969600 524550 8490500 7509600 8241000 6747400 5984200 6581800 5745500 6637700 7 7 6 7 7 7 7 7 7 7 7 3249100 4927400 14940 4821300 5398400 5920400 3711600 3335800 3821900 3473500 3975900 3025300 4597400 313400 4942500 5134800 5905400 3856500 3526200 3888800 3386700 3830600 3 3 3 3 3 3 3 3 3 3 3 2274500 3614500 27696 3487900 2464600 2210500 2879100 2428800 2626000 2414500 2919300 2118000 3372200 211150 3548000 2374900 2335600 2890900 2458000 2693000 2358700 2807100 4 4 3 4 4 4 4 4 4 4 4 600470000 440330000 160140000 20843 614 19161 108067;108068;108069;108070;108071 130994;130995;130996;130997;130998;130999;131000 130998 615 7 VMEHFIK Unmodified 902.46841 0.46840908 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 4 2 2 4 43.497 44.011 3 0.0015529 12961 20211116_3435_TMUAki_TMT10x_P_F7 114.78 59.179 7370900 10689000 91122 12117000 9639600 7762900 8092300 3561700 3012600 4239200 7823200 6863200 9979100 663240 12195000 9205400 8082500 8132000 3853600 3457800 4112400 7397800 2 2 1 2 2 2 2 2 2 2 2 4868600 6903900 0 7925500 8101200 6021600 5284000 2060600 1762500 2637000 5020200 4532600 6445900 384360 7984700 7692800 6162800 5398000 2312200 2062700 2551600 4741900 1 1 0 1 1 1 1 1 1 1 1 2502300 3784900 91122 4191400 1538500 1741400 2808300 1501200 1250100 1602300 2803000 2330600 3533300 278880 4210600 1512600 1919700 2734000 1541400 1395000 1560700 2655900 1 1 1 1 1 1 1 1 1 1 1 731490000 523740000 207750000 20844 614 19161 108072;108073;108074;108075;108076;108077 131001;131002;131003;131004;131005;131006 131002 6 VMEKPSPLLVGR Oxidation (M) 1340.7486 0.74860669 1616;3188 Q13283;Q13283-2;Q9UN86;Q9UN86-2 G3BP1;G3BP2 Ras GTPase-activating protein-binding protein 1;Ras GTPase-activating protein-binding protein 2 no no 0 0 1 1 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 42.254 42.444 3 0.00011966 10958 20211116_3428_TMUAki_TMT10x_P_F1 95.66 78.635 9412400 16734000 77793 13791000 18131000 19686000 12260000 17986000 20231000 15867000 16752000 8764400 15604000 969020 14365000 17242000 19653000 12990000 18309000 20109000 15584000 16268000 7 7 5 7 7 7 7 7 7 7 7 4742000 8023200 51004 6920400 13552000 14185000 7589700 8690900 9771700 7527400 8263500 4415600 7482300 558130 7246500 12847000 13879000 8077800 9078700 9792000 7399600 8018200 3 3 2 3 3 3 3 3 3 3 3 4670500 8711300 26789 6870700 4579600 5501300 4670300 9294900 10459000 8339600 8488600 4348900 8121700 410890 7118800 4395100 5774100 4911700 9230300 10317000 8184300 8249600 4 4 3 4 4 4 4 4 4 4 4 1169200000 776040000 393200000 20845 1616;3188 19162 108078;108079;108080;108081;108082;108083 131007;131008;131009;131010 131007 2171 4 VMEKPSPLLVGR Unmodified 1324.7537 0.75369207 1616;3188 Q13283;Q13283-2;Q9UN86;Q9UN86-2 G3BP1;G3BP2 Ras GTPase-activating protein-binding protein 1;Ras GTPase-activating protein-binding protein 2 no no 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 49.512 49.376 3 0.00065407 15357 20211116_3429_TMUAki_TMT10x_P_F2 80.746 58.548 3293300 5815600 14321 4634200 7335500 6334600 5010200 2370600 2410000 2491000 4104900 3066500 5422100 342990 4836500 6976100 6259300 5123200 2614000 2625700 2427900 3907400 1 1 1 1 1 1 1 1 1 1 1 3293300 5815600 14321 4634200 7335500 6334600 5010200 2370600 2410000 2491000 4104900 3066500 5422100 342990 4836500 6976100 6259300 5123200 2614000 2625700 2427900 3907400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 706140000 706140000 0 20846 1616;3188 19162 108084;108085 131011 131011 1 VMEMYQPSAVVLQCGADSLSGDR 2 Oxidation (M) 2544.1295 0.12945891 2362 Q92769;Q92769-3 HDAC2 Histone deacetylase 2 yes no 0 0 2 0 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 62.464 62.435 3 0.0016716 18659 20211116_3444_TMUAki_TMT10x_S_F5 58.938 46.445 4207100 6388400 1558.3 7122600 5084900 6686100 4584600 5830400 5431500 4848500 5522500 3916600 5963800 276350 7207800 4857500 6819000 4702700 5941800 5491800 4775700 5324600 3 3 1 3 3 3 3 3 3 3 3 2967400 4116300 1558.3 5172300 3794000 5438600 3434000 3988600 3624800 3142700 3739600 2762500 3844900 197100 5206000 3624900 5491500 3508000 4103100 3683300 3104200 3603900 2 2 1 2 2 2 2 2 2 2 2 1239700 2272100 0 1950200 1290800 1247500 1150600 1841900 1806700 1705700 1782900 1154100 2118900 79249 2001800 1232600 1327500 1194700 1838600 1808500 1671500 1720600 1 1 0 1 1 1 1 1 1 1 1 1284500000 691030000 593440000 20847 2362 19163 108086;108087;108088 131012;131013;131014 131014 2702;2703 3 VMEMYQPSAVVLQCGADSLSGDR Oxidation (M) 2528.1345 0.13454429 2362 Q92769;Q92769-3 HDAC2 Histone deacetylase 2 yes no 0 0 1 0 By MS/MS 6 0 1 1 69.464 69.418 3 2.7102E-05 21464 20211116_3434_TMUAki_TMT10x_P_F6 73.153 60.339 1056900 1746600 42639 1796800 1131000 2179800 1337700 1388500 1100600 1269300 1253000 984370 1630000 128400 1835200 1092200 2179200 1338700 1448100 1135500 1244600 1204000 1 1 1 1 1 1 1 1 1 1 1 1056900 1746600 42639 1796800 1131000 2179800 1337700 1388500 1100600 1269300 1253000 984370 1630000 128400 1835200 1092200 2179200 1338700 1448100 1135500 1244600 1204000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 618780000 618780000 0 20848 2362 19163 108089 131015 131015 2702;2703 1 VMENSSGTPDILTR Oxidation (M) 1534.7297 0.72972174 2473 Q96GD4;Q96GD4-4;Q96GD4-2;Q96GD4-5;Q96GD4-3 AURKB Aurora kinase B yes no 0 0 1 0 By MS/MS 3 0 1 1 42.391 42.446 2 0.082337 12958 20211116_3430_TMUAki_TMT10x_P_F3 44.426 32.212 116030 190240 953.73 271530 346100 341970 181900 182980 223490 144650 186020 108040 177820 13730 272320 327790 340460 194380 192920 224210 142850 180610 1 1 1 1 1 1 1 1 1 1 1 116030 190240 953.73 271530 346100 341970 181900 182980 223490 144650 186020 108040 177820 13730 272320 327790 340460 194380 192920 224210 142850 180610 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16295000 16295000 0 20849 2473 19164 108090 131016 131016 2765 1 VMFSSFGQIEECR Oxidation (M) 1604.6963 0.69631312 2371 Q92879;Q92879-4;Q92879-5;Q92879-2;Q92879-3;Q92879-6 CELF1 CUGBP Elav-like family member 1 yes no 0 0 1 0 By MS/MS By MS/MS 4.5 0.5 2 2 1 3 59.801 59.816 2;3 1.9145E-12 18644 20211116_3433_TMUAki_TMT10x_P_F5 139.98 124.39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20850 2371 19165 108091;108092;108093;108094 131017;131018;131019;131020 131017 2710 4 VMGLVPAK Unmodified 813.47825 0.47824549 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS 2 0 1 1 54.584 54.388 2 0.0058054 16087 20211116_3440_TMUAki_TMT10x_S_F2 94.163 8.8568 6099000 10427000 0 10117000 5829400 4709400 5605400 5025600 4117700 5128400 7118300 5678600 9728500 479440 10262000 5582400 5138200 5651500 5096800 4360700 5004400 6773900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6099000 10427000 0 10117000 5829400 4709400 5605400 5025600 4117700 5128400 7118300 5678600 9728500 479440 10262000 5582400 5138200 5651500 5096800 4360700 5004400 6773900 1 1 0 1 1 1 1 1 1 1 1 250140000 0 250140000 20851 1092 19166 108095 131021 131021 1 VMGLVPAK Oxidation (M) 829.47316 0.47316011 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 1 0 By MS/MS 8 0 1 1 45.855 45.797 2 0.028723 11918 20211116_3447_TMUAki_TMT10x_S_F8 68.485 53.403 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20852 1092 19166 108096 131022 131022 1438 1 VMIPQDEYPEINFVGLLIGPR Oxidation (M) 2415.2508 0.25081832 1819;1820 Q15637;Q15637-6;Q15637-4;Q15637-2;Q15637-3;Q15637-7;Q15637-5 SF1 Splicing factor 1 no no 0 0 1 0 By MS/MS By MS/MS 6.29 1.28 2 2 2 6 2 7 7 81.788 81.799 2;3;4 6.6597E-35 28977 20211116_3446_TMUAki_TMT10x_S_F7 182.82 170.07 9530100 16292000 116590 14855000 11485000 15824000 11689000 10934000 11400000 12196000 13832000 8873700 15197000 846660 15270000 11020000 15950000 11837000 11401000 11696000 11859000 13268000 15 15 10 15 15 15 15 15 15 15 15 5369600 8727800 85477 8209200 5407800 10598000 5834100 6129700 6446100 6727200 7420200 5000000 8142000 490300 8447100 5198900 10549000 5914500 6475600 6565600 6545600 7127800 9 9 7 9 9 9 9 9 9 9 9 4160500 7564400 31110 6645400 6077500 5225700 5854800 4803900 4953600 5468700 6411500 3873700 7054900 356360 6823100 5820700 5401700 5922500 4925500 5130600 5313600 6139800 6 6 3 6 6 6 6 6 6 6 6 6837800000 3133300000 3704500000 20853 1819;1820 19167 108097;108098;108099;108100;108101;108102;108103;108104;108105;108106;108107;108108;108109;108110 131023;131024;131025;131026;131027;131028;131029;131030;131031;131032;131033;131034;131035;131036;131037;131038;131039 131038 2439 17 VMIPQDEYPEINFVGLLIGPR Unmodified 2399.2559 0.2559037 1819;1820 Q15637;Q15637-6;Q15637-4;Q15637-2;Q15637-3;Q15637-7;Q15637-5 SF1 Splicing factor 1 no no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 82.395 82.408 3 1.0364E-26 27374 20211116_3436_TMUAki_TMT10x_P_F8 173.21 161.42 1694100 2649800 21137 2543900 1746500 2722400 2013500 1567600 1665300 1775400 2009500 1577500 2472100 160880 2605300 1682600 2736400 2017600 1658300 1721600 1725400 1927800 3 3 3 3 3 3 3 3 3 3 3 1261200 1888300 11996 1856100 1170800 2183100 1342600 1209000 1261200 1323100 1430700 1174400 1761800 114470 1900700 1127600 2181900 1350300 1281800 1292600 1287500 1374900 2 2 2 2 2 2 2 2 2 2 2 432910 761490 9140.9 687760 575740 539290 670910 358630 404100 452360 578790 403150 710270 46410 704620 554990 554500 667300 376550 428970 437940 552930 1 1 1 1 1 1 1 1 1 1 1 588090000 196060000 392020000 20854 1819;1820 19167 108111;108112;108113;108114 131040;131041;131042 131041 3 VMLEDGR Unmodified 818.39564 0.39563807 1619 Q13310;Q13310-2;Q13310-3 PABPC4 Polyadenylate-binding protein 4 yes no 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 35.503 35.379 2 0.051472 8249 20211116_3440_TMUAki_TMT10x_S_F2 68.312 27.74 4341500 7103300 15616 6545800 6913500 8330200 5400700 5165400 5561800 5172500 6251500 4042500 6626100 405890 6743800 6591600 8305100 5562200 5411700 5675600 5051400 6009200 4 4 2 4 4 4 4 4 4 4 4 3306600 5385000 9145 4897400 5767700 7358000 4225800 3970000 4334100 4055600 4792500 3078800 5022900 313200 5067400 5491900 7268000 4370300 4209900 4420700 3957400 4608900 2 2 1 2 2 2 2 2 2 2 2 1035000 1718400 6470.7 1648300 1145800 972210 1174900 1195400 1227700 1116900 1459000 963690 1603100 92683 1676400 1099700 1037100 1191900 1201800 1254900 1094000 1400300 2 2 1 2 2 2 2 2 2 2 2 88395000 49700000 38695000 20855 1619 19168 108115;108116;108117 131043 131043 1 VMLGETNPADSKPGTIR Oxidation (M) 1800.904 0.90399771 770;684 P15531;P15531-2;P22392-2;P22392;O60361 NME1;NME2;NME2P1 Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase no no 0 0 1 1 By MS/MS By MS/MS 5.68 1.22 1 3 5 7 5 1 11 11 41.808 41.984 2;3;4 9.1287E-40 11423 20211116_3433_TMUAki_TMT10x_P_F5 200.19 174.75 52799000 88700000 377750 103430000 147030000 143110000 73463000 106030000 130900000 73074000 97745000 49161000 82821000 5660700 105060000 139140000 142510000 80142000 108690000 129480000 72726000 95318000 29 29 17 29 29 29 29 29 29 29 29 32308000 52610000 208510 61587000 129900000 126320000 56132000 67419000 86433000 45216000 61069000 30083000 49124000 4022200 63163000 122710000 123370000 61733000 70855000 85705000 45075000 59696000 13 13 7 13 13 13 13 13 13 13 13 20490000 36090000 169230 41838000 17134000 16789000 17331000 38615000 44465000 27858000 36676000 19078000 33697000 1638500 41901000 16433000 19140000 18409000 37838000 43772000 27651000 35621000 16 16 10 16 16 16 16 16 16 16 16 25261000000 17949000000 7311700000 20856 684;770 19169 108118;108119;108120;108121;108122;108123;108124;108125;108126;108127;108128;108129;108130;108131;108132;108133;108134;108135;108136;108137;108138;108139 131044;131045;131046;131047;131048;131049;131050;131051;131052;131053;131054;131055;131056;131057;131058;131059;131060;131061;131062;131063;131064;131065;131066;131067;131068;131069;131070;131071;131072;131073;131074 131049 771 31 VMLGETNPADSKPGTIR Unmodified 1784.9091 0.90908309 770;684 P15531;P15531-2;P22392-2;P22392;O60361 NME1;NME2;NME2P1 Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase no no 0 0 0 1 By MS/MS By MS/MS 6.54 0.929 2 4 5 2 6 7 45.781 46.024 3;4 3.0364E-47 12967 20211116_3433_TMUAki_TMT10x_P_F5 246.47 226.24 42954000 69812000 431860 86966000 96345000 73866000 59697000 33343000 29439000 32491000 56723000 39995000 65206000 4348600 87312000 91461000 75147000 61532000 35920000 32241000 31767000 53874000 11 11 8 11 11 11 11 11 11 11 11 28151000 45704000 318220 55830000 86461000 65401000 50155000 21817000 20041000 21321000 36631000 26211000 42684000 3154700 56384000 81990000 65057000 51840000 24367000 22295000 20844000 34823000 7 7 6 7 7 7 7 7 7 7 7 14803000 24108000 113640 31136000 9884000 8464500 9542100 11526000 9398000 11169000 20092000 13783000 22522000 1193900 30929000 9470900 10090000 9692300 11553000 9946600 10923000 19051000 4 4 2 4 4 4 4 4 4 4 4 17002000000 10767000000 6234600000 20857 684;770 19169 108140;108141;108142;108143;108144;108145;108146;108147;108148;108149;108150;108151;108152 131075;131076;131077;131078;131079;131080;131081;131082;131083;131084;131085;131086 131075 12 VMNETVALK Oxidation (M) 1019.5321 0.53213155 3388 yes no 0 0 1 0 By MS/MS 4 0 1 1 64.095 63.938 2 0.064631 20583 20211116_3442_TMUAki_TMT10x_S_F4 63.419 21.99 + 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20858 3388 19170 108153 131087 131087 3314 1 VMPAPPPK Oxidation (M) 851.45751 0.45751004 788 P23588;P23588-2 EIF4B Eukaryotic translation initiation factor 4B yes no 0 0 1 0 By MS/MS By MS/MS 6 0.894 2 1 2 2 3 33.578 33.8 2;3 0.026795 9096 20211116_3435_TMUAki_TMT10x_P_F7 70.268 55.186 140930 254650 2125.8 247250 140160 131230 148000 160410 148730 140920 236790 131220 237590 11559 251030 134580 141500 149740 161040 154400 138430 225690 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 140930 254650 2125.8 247250 140160 131230 148000 160410 148730 140920 236790 131220 237590 11559 251030 134580 141500 149740 161040 154400 138430 225690 2 2 1 2 2 2 2 2 2 2 2 21445000 13067000 8377700 20859 788 19171 108154;108155;108156;108157;108158 131088;131089;131090 131088 931 3 VMPAPPPK Unmodified 835.4626 0.46259542 788 P23588;P23588-2 EIF4B Eukaryotic translation initiation factor 4B yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 2 4 1 5 40.442 40.846 2;3 0.0029517 11867 20211116_3446_TMUAki_TMT10x_S_F7 103.29 81.779 2465100 3808000 4732.5 4172800 2819400 2264300 2430800 1719300 1706800 1672400 2805800 2295100 3554600 193040 4202700 2692500 2412200 2463600 1774200 1807100 1635300 2672600 4 4 1 4 4 4 4 4 4 4 4 780890 1253400 0 1314400 1334500 1310000 943560 657220 644030 628930 967090 727040 1169700 66928 1336600 1269400 1320100 968260 700320 679760 615410 922920 1 1 0 1 1 1 1 1 1 1 1 1684200 2554700 4732.5 2858400 1484900 954270 1487300 1062100 1062800 1043500 1838700 1568100 2384900 126120 2866100 1423100 1092000 1495400 1073900 1127300 1019900 1749700 3 3 1 3 3 3 3 3 3 3 3 286970000 75559000 211410000 20860 788 19171 108159;108160;108161;108162;108163;108164 131091;131092;131093;131094;131095;131096 131092 6 VMPFSTACNTPLSNFESHQNYK Oxidation (M) 2587.1472 0.14715788 1002 P41252 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 0 0 1 0 By MS/MS 8 0 1 1 59.609 59.611 3 1.3547E-19 17498 20211116_3447_TMUAki_TMT10x_S_F8 145.88 138.44 2965800 5498100 27526 5619700 3927100 3762900 3381000 3901100 4294600 4657700 4538200 2761600 5130800 285000 5696700 3753400 3951100 3486300 3982100 4337700 4517800 4370300 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2965800 5498100 27526 5619700 3927100 3762900 3381000 3901100 4294600 4657700 4538200 2761600 5130800 285000 5696700 3753400 3951100 3486300 3982100 4337700 4517800 4370300 3 3 3 3 3 3 3 3 3 3 3 331140000 0 331140000 20861 1002 19172 108165 131097;131098;131099 131098 1297 3 VMPNAIVQSVGVSSGK Unmodified 1571.8341 0.83412723 448 O95831;O95831-3;O95831-2;O95831-5 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 0 0 0 0 By MS/MS 2 0 1 1 62.453 62.174 3 0.00034546 20590 20211116_3429_TMUAki_TMT10x_P_F2 73.208 59.302 5166500 8810900 4697.9 8101600 9277100 15237000 8044600 8779900 7601500 7920900 7634600 4810600 8218800 490290 8421800 8864700 14938000 8210700 9227000 7753800 7771300 7363800 1 1 1 1 1 1 1 1 1 1 1 5166500 8810900 4697.9 8101600 9277100 15237000 8044600 8779900 7601500 7920900 7634600 4810600 8218800 490290 8421800 8864700 14938000 8210700 9227000 7753800 7771300 7363800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 291620000 291620000 0 20862 448 19173 108166 131100 131100 1 VMPNAIVQSVGVSSGK Oxidation (M) 1587.829 0.82904185 448 O95831;O95831-3;O95831-2;O95831-5 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 0 0 1 0 By MS/MS 1 0 1 1 55.54 55.239 3 0.0034489 18195 20211116_3439_TMUAki_TMT10x_S_F1 59.502 44.115 1138200 1944900 43679 2256300 1204600 1157200 1007100 2034600 1907000 1699500 1828600 1060100 1816000 136000 2263400 1152700 1266400 1059700 2014300 1897900 1673700 1766400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1138200 1944900 43679 2256300 1204600 1157200 1007100 2034600 1907000 1699500 1828600 1060100 1816000 136000 2263400 1152700 1266400 1059700 2014300 1897900 1673700 1766400 1 1 1 1 1 1 1 1 1 1 1 193150000 0 193150000 20863 448 19173 108167 131101 131101 331 1 VMQPLVQQPILPVVK Oxidation (M) 1704.0008 0.0007986285 1940 Q5T8P6;Q5T8P6-2 RBM26 RNA-binding protein 26 yes no 0 0 1 0 By MS/MS By MS/MS 2 0 2 1 1 68.884 68.642 3 1.3193E-06 23196 20211116_3429_TMUAki_TMT10x_P_F2 95.651 80.449 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20864 1940 19174 108168;108169 131102;131103 131102 2525 2 VMQPQILEVNFNPDCER Oxidation (M) 2103.9718 0.9717597 1688 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes yes 0 0 1 0 By MS/MS 5 0 1 1 64.818 64.875 3 6.2207E-07 19627 20211116_3444_TMUAki_TMT10x_S_F5 99.813 94.09 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20865 1688 19175 108170 131104 131104 2260 1 VMQVLNADAIVVK Unmodified 1398.7905 0.7904715 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 3 2 1 73.275 73.307 2;3 7.6564E-24 23152 20211116_3447_TMUAki_TMT10x_S_F8 186.46 157.38 13024000 21752000 129510 21938000 16016000 23387000 16330000 10869000 10740000 12399000 15579000 12127000 20297000 1236000 22389000 15373000 23454000 16375000 11729000 11342000 12046000 14879000 4 4 2 4 4 4 4 4 4 4 4 13024000 21752000 129510 21938000 16016000 23387000 16330000 10869000 10740000 12399000 15579000 12127000 20297000 1236000 22389000 15373000 23454000 16375000 11729000 11342000 12046000 14879000 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 842910000 842910000 0 20866 2048 19176 108171;108172;108173 131105;131106;131107;131108;131109 131109 5 VMTIAPGLFGTPLLTSLPEK Oxidation (M) 2100.1541 0.15406439 2598 Q99714 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes yes 0 0 1 0 By MS/MS 3 0 1 1 80.033 79.96 3 6.498E-05 28231 20211116_3430_TMUAki_TMT10x_P_F3 71.742 59.766 1529400 2791600 4053.8 2943700 1448500 3343500 1921100 1911000 1972000 1845500 2398400 1424000 2605500 129440 2998300 1401100 3349300 1925500 2013300 2019000 1805100 2300400 1 1 1 1 1 1 1 1 1 1 1 1529400 2791600 4053.8 2943700 1448500 3343500 1921100 1911000 1972000 1845500 2398400 1424000 2605500 129440 2998300 1401100 3349300 1925500 2013300 2019000 1805100 2300400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 826400000 826400000 0 20867 2598 19177 108174 131110 131110 2837 1 VMTIAPGLFGTPLLTSLPEK Unmodified 2084.1591 0.15914976 2598 Q99714 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes yes 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 81.08 81.065 3 2.4597E-09 27533 20211116_3442_TMUAki_TMT10x_S_F4 114.4 98.979 2189700 3617900 45028 4871800 1737500 2045300 3100600 595060 679040 1310100 1885000 2039100 3380600 217170 4839200 1703000 2225300 2998800 699610 839570 1250100 1781000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2189700 3617900 45028 4871800 1737500 2045300 3100600 595060 679040 1310100 1885000 2039100 3380600 217170 4839200 1703000 2225300 2998800 699610 839570 1250100 1781000 1 1 1 1 1 1 1 1 1 1 1 1096100000 0 1096100000 20868 2598 19177 108175;108176 131111;131112 131112 2 VMTIPYQPMPASSPVICAGGQDR Unmodified 2474.1756 0.17562124 1791 Q15365 PCBP1 Poly(rC)-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 2 1 1 2 69.956 69.871 3 9.2891E-13 21753 20211116_3447_TMUAki_TMT10x_S_F8 116.94 101.98 9180800 16518000 554290 16872000 10797000 15443000 12098000 10670000 9758000 10897000 12777000 8552400 15414000 1300400 17166000 10419000 15713000 12131000 11096000 10137000 10633000 12232000 5 5 5 5 5 5 5 5 5 5 5 5590400 9980000 299930 10272000 6038900 11135000 7443700 6486900 6411400 6714600 7773700 5207500 9313500 749290 10471000 5843800 11186000 7445100 6836900 6616000 6548500 7456800 3 3 3 3 3 3 3 3 3 3 3 3590400 6537800 254360 6600200 4758300 4307400 4654600 4182700 3346600 4182000 5003600 3344900 6100700 551080 6694600 4575300 4526700 4686300 4259000 3520700 4084400 4775500 2 2 2 2 2 2 2 2 2 2 2 1742100000 1069500000 672620000 20869 1791 19178 108177;108178;108179 131113;131114;131115;131116;131117;131118 131118 6 VMTIPYQPMPASSPVICAGGQDR 2 Oxidation (M) 2506.1655 0.16545048 1791 Q15365 PCBP1 Poly(rC)-binding protein 1 yes yes 0 0 2 0 By MS/MS By MS/MS 7 0.707 2 4 2 4 4 55.681 56.062 2;3 3.0678E-15 17758 20211116_3435_TMUAki_TMT10x_P_F7 125.39 104.14 12974000 22824000 56127 22016000 16947000 27523000 16309000 20588000 20559000 18077000 18968000 12080000 21294000 1125700 22599000 16233000 27543000 16708000 21207000 20673000 17758000 18347000 11 11 4 11 11 11 11 11 11 11 11 10129000 17780000 55497 17067000 13618000 24819000 13642000 15841000 16242000 13926000 14791000 9431100 16588000 893760 17578000 13059000 24605000 13917000 16501000 16358000 13680000 14313000 8 8 3 8 8 8 8 8 8 8 8 2845500 5043800 629.99 4948600 3328800 2703600 2666500 4747500 4317400 4150800 4177200 2649400 4706000 231980 5021500 3174400 2938700 2790500 4705900 4315000 4078400 4034000 3 3 1 3 3 3 3 3 3 3 3 10277000000 5267000000 5009800000 20870 1791 19178 108180;108181;108182;108183;108184;108185;108186;108187 131119;131120;131121;131122;131123;131124;131125;131126;131127;131128;131129;131130 131123 2409;2410 12 VMTIPYQPMPASSPVICAGGQDR Oxidation (M) 2490.1705 0.17053586 1791 Q15365 PCBP1 Poly(rC)-binding protein 1 yes yes 0 0 1 0 By MS/MS By MS/MS 7.67 0.471 2 4 3 3 62.702 62.955 3 3.1971E-13 19270 20211116_3447_TMUAki_TMT10x_S_F8 121.47 115.94 24655000 41020000 143360 37203000 28205000 38014000 27761000 31900000 30433000 31358000 31983000 22955000 38262000 2007700 38235000 27027000 38539000 28265000 32726000 30898000 30648000 30805000 8 8 4 8 8 8 8 8 8 8 8 10782000 16836000 125580 14372000 12333000 23626000 12924000 15626000 15075000 15022000 13913000 10039000 15700000 878270 14974000 11838000 23318000 13146000 16273000 15201000 14696000 13457000 3 3 2 3 3 3 3 3 3 3 3 13873000 24185000 17779 22831000 15872000 14388000 14836000 16274000 15358000 16336000 18070000 12917000 22562000 1129400 23261000 15190000 15220000 15119000 16453000 15697000 15952000 17348000 5 5 2 5 5 5 5 5 5 5 5 6736100000 3758600000 2977500000 20871 1791 19178 108188;108189;108190;108191;108192;108193 131131;131132;131133;131134;131135;131136;131137 131137 2409;2410 7 VMVELLGSYTEDNASQAR Oxidation (M) 1997.9364 0.93642005 2056 Q7L2H7;Q7L2H7-2 EIF3M Eukaryotic translation initiation factor 3 subunit M yes no 0 0 1 0 By MS/MS By MS/MS 3.62 0.857 1 2 4 1 5 3 60.98 60.841 2;3 4.3875E-63 18886 20211116_3431_TMUAki_TMT10x_P_F4 268.95 257.85 16912000 29802000 157310 25711000 21011000 29298000 21041000 20663000 19931000 20231000 22465000 15747000 27793000 1515900 26572000 20151000 29432000 21307000 21431000 20414000 19777000 21593000 10 10 3 10 10 10 10 10 10 10 10 12825000 22044000 103380 19062000 15614000 24878000 15910000 15423000 14890000 15530000 16792000 11941000 20558000 1124500 19744000 14980000 24773000 16091000 16161000 15260000 15163000 16140000 7 7 2 7 7 7 7 7 7 7 7 4086600 7757800 53932 6648500 5397000 4420200 5131200 5239700 5040800 4701200 5672900 3805300 7234700 391400 6827600 5170400 4658900 5215900 5269900 5154500 4613600 5452900 3 3 1 3 3 3 3 3 3 3 3 3882800000 2627400000 1255500000 20872 2056 19179 108194;108195;108196;108197;108198;108199;108200;108201 131138;131139;131140;131141;131142;131143;131144;131145;131146;131147;131148 131144 2571 11 VMVELLGSYTEDNASQAR Unmodified 1981.9415 0.94150543 2056 Q7L2H7;Q7L2H7-2 EIF3M Eukaryotic translation initiation factor 3 subunit M yes no 0 0 0 0 By MS/MS 4 0 1 1 75.348 75.378 3 8.0615E-17 24788 20211116_3431_TMUAki_TMT10x_P_F4 144.97 127.06 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20873 2056 19179 108202 131149 131149 1 VMVLDFVTPTPLGTR Oxidation (M) 1660.8858 0.88582845 1871 Q16881;Q16881-3;Q16881-4;Q16881-5;Q16881-2;Q16881-6 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 0 0 1 0 By MS/MS By MS/MS 2.8 2.64 4 4 2 5 5 77.321 77.292 2;3 3.6371E-10 27135 20211116_3439_TMUAki_TMT10x_S_F1 118.51 94.981 24600000 43697000 132800 34084000 34095000 49730000 33623000 43320000 41804000 43206000 38602000 22905000 40738000 2142500 35684000 32678000 49552000 34383000 44365000 42057000 42202000 37337000 8 8 3 8 8 8 8 8 8 8 8 11869000 20774000 0 14768000 12663000 28360000 14837000 21525000 19997000 20646000 17440000 11050000 19362000 900540 15694000 12190000 27900000 15096000 22204000 20027000 20201000 16902000 4 4 0 4 4 4 4 4 4 4 4 12731000 22923000 132800 19315000 21432000 21370000 18786000 21794000 21806000 22559000 21162000 11855000 21376000 1241900 19990000 20488000 21653000 19288000 22161000 22029000 22001000 20434000 4 4 3 4 4 4 4 4 4 4 4 7896600000 4191400000 3705200000 20874 1871 19180 108203;108204;108205;108206;108207;108208;108209;108210;108211;108212 131150;131151;131152;131153;131154;131155;131156;131157;131158;131159 131156 2485 10 VMVLDFVTPTPLGTR Unmodified 1644.8909 0.89091383 1871 Q16881;Q16881-3;Q16881-4;Q16881-5;Q16881-2;Q16881-6 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 2.75 0.433 1 3 3 1 79.145 79.083 2;3 1.6993E-15 28864 20211116_3441_TMUAki_TMT10x_S_F3 159.52 146.51 7987800 12154000 61685 12161000 8131500 11776000 10225000 5388000 4710800 6362900 9152500 7437600 11341000 692990 12400000 7851300 11877000 10091000 5829700 5191400 6174100 8691600 2 2 1 2 2 2 2 2 2 2 2 6391400 9952900 0 10310000 6332300 10065000 8283200 4277100 3597400 5026300 7564500 5950800 9288400 500310 10489000 6118800 10138000 8155000 4663200 4005500 4878100 7174400 1 1 0 1 1 1 1 1 1 1 1 1596400 2201200 61685 1850400 1799200 1711400 1941700 1110800 1113500 1336500 1588000 1486800 2052700 192680 1910400 1732500 1738600 1936500 1166500 1185800 1296000 1517200 1 1 1 1 1 1 1 1 1 1 1 2709000000 1876200000 832740000 20875 1871 19180 108213;108214;108215;108216 131160;131161 131161 2 VMVQINTSGEESK Oxidation (M) 1436.6817 0.68170891 393 O94903 PROSC Proline synthase co-transcribed bacterial homolog protein yes yes 0 0 1 0 By MS/MS 4 0 1 1 42.211 42.427 3 0.00057247 11713 20211116_3442_TMUAki_TMT10x_S_F4 78.486 58.059 897170 1672200 81165 2500900 769030 927780 744520 1323100 1391600 1206200 1364600 835960 1563400 148230 2469300 741690 1051100 776510 1321800 1386500 1182900 1317200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 897170 1672200 81165 2500900 769030 927780 744520 1323100 1391600 1206200 1364600 835960 1563400 148230 2469300 741690 1051100 776510 1321800 1386500 1182900 1317200 1 1 1 1 1 1 1 1 1 1 1 67112000 0 67112000 20876 393 19181 108217 131162 131162 301 1 VMVQPINLIFR Oxidation (M) 1344.7588 0.75877744 1349 P62304 SNRPE Small nuclear ribonucleoprotein E yes yes 0 0 1 0 By MS/MS By MS/MS 3.2 1.17 1 2 2 4 1 5 5 74.629 74.561 2;3 1.1386E-10 26093 20211116_3430_TMUAki_TMT10x_P_F3 162.49 155.9 50881000 91233000 327390 74530000 60210000 84836000 64286000 62940000 64928000 61874000 66781000 47375000 85068000 4307600 77367000 57831000 85298000 65015000 65066000 66091000 60473000 64364000 9 9 3 9 9 9 9 9 9 9 9 22644000 39704000 0 31106000 22697000 50557000 29274000 29441000 29691000 27452000 29116000 21082000 37016000 1684800 32631000 21916000 49829000 29363000 30940000 30167000 26893000 28105000 3 3 0 3 3 3 3 3 3 3 3 28237000 51530000 327390 43424000 37513000 34280000 35012000 33499000 35237000 34422000 37665000 26293000 48052000 2622900 44736000 35916000 35468000 35652000 34126000 35924000 33580000 36259000 6 6 3 6 6 6 6 6 6 6 6 17023000000 8380400000 8642800000 20877 1349 19182 108218;108219;108220;108221;108222;108223;108224;108225;108226;108227 131163;131164;131165;131166;131167;131168;131169;131170;131171 131164 1807 9 VMVQPINLIFR Unmodified 1328.7639 0.76386282 1349 P62304 SNRPE Small nuclear ribonucleoprotein E yes yes 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 78.427 78.427 2 1.8086E-19 25165 20211116_3444_TMUAki_TMT10x_S_F5 236.21 216.44 40291000 69283000 401450 63081000 45084000 49849000 51385000 22690000 18388000 26622000 42842000 37518000 64626000 3780400 64593000 43411000 50988000 50771000 24558000 21018000 25838000 40571000 6 6 5 6 6 6 6 6 6 6 6 24761000 41963000 364480 38583000 24627000 36551000 32607000 14603000 12199000 17384000 25951000 23058000 39143000 2390700 39570000 23836000 36868000 32026000 16038000 13791000 16863000 24608000 4 4 4 4 4 4 4 4 4 4 4 15530000 27321000 36973 24497000 20456000 13298000 18777000 8086700 6189000 9238100 16892000 14460000 25483000 1389700 25023000 19574000 14121000 18745000 8519400 7226900 8974900 15964000 2 2 1 2 2 2 2 2 2 2 2 7187200000 3849500000 3337700000 20878 1349 19182 108228;108229;108230;108231;108232 131172;131173;131174;131175;131176;131177 131176 6 VMVTNVTSLLK Oxidation (M) 1219.6846 0.68460945 3293 Q9Y490;Q9Y4G6 TLN1;TLN2 Talin-1;Talin-2 yes no 0 0 1 0 By MS/MS By MS/MS 2 0 2 1 1 66.175 65.864 2 0.00043847 22090 20211116_3429_TMUAki_TMT10x_P_F2 94.801 56.444 3028100 5397900 41593 4734800 5463900 8599800 4396300 5568200 5914100 5239100 4890600 2819700 5034300 323930 4934900 5214700 8454400 4562100 5804500 5913900 5130300 4749400 1 1 1 1 1 1 1 1 1 1 1 3028100 5397900 41593 4734800 5463900 8599800 4396300 5568200 5914100 5239100 4890600 2819700 5034300 323930 4934900 5214700 8454400 4562100 5804500 5913900 5130300 4749400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 594040000 594040000 0 20879 3293 19183 108233;108234 131178;131179 131178 3263 2 VNAEGSVDSVFSQVCTHLDALK Unmodified 2375.1427 0.14272443 474 P00568 AK1 Adenylate kinase isoenzyme 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.71 1.03 1 2 2 2 3 4 77.654 77.66 3 3.3632E-36 27292 20211116_3446_TMUAki_TMT10x_S_F7 197.68 174.35 29131000 48357000 342840 46897000 31712000 38490000 32611000 22770000 24308000 25472000 33997000 27126000 45117000 2747400 47820000 30449000 39376000 32775000 24025000 25436000 24766000 32496000 9 9 8 9 9 9 9 9 9 9 9 14789000 23372000 214330 22885000 12240000 23260000 14581000 11381000 12258000 12889000 16005000 13772000 21807000 1390200 23387000 11808000 23405000 14596000 12216000 12705000 12526000 15323000 4 4 4 4 4 4 4 4 4 4 4 14342000 24985000 128510 24012000 19472000 15230000 18030000 11389000 12049000 12583000 17992000 13354000 23310000 1357300 24434000 18641000 15971000 18179000 11809000 12731000 12240000 17173000 5 5 4 5 5 5 5 5 5 5 5 8187900000 3477900000 4710000000 20880 474 19184 108235;108236;108237;108238;108239;108240;108241 131180;131181;131182;131183;131184;131185;131186;131187;131188 131187 9 VNAELQAR Unmodified 899.48248 0.48247924 448 O95831;O95831-3;O95831-2;O95831-5 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 0 0 0 0 By MS/MS 3 0 1 1 32.372 32.127 2 0.023394 9898 20211116_3441_TMUAki_TMT10x_S_F3 68.846 35.451 248040 457010 3771 418150 272400 240080 312810 275110 286140 278790 335150 230980 426290 24420 426660 262440 256340 314360 278050 294010 272130 321790 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 248040 457010 3771 418150 272400 240080 312810 275110 286140 278790 335150 230980 426290 24420 426660 262440 256340 314360 278050 294010 272130 321790 1 1 1 1 1 1 1 1 1 1 1 20738000 0 20738000 20881 448 19185 108242 131189 131189 1 VNAMTFTFDNVLPGK Oxidation (M) 1668.8181 0.81814282 1422 Q5JPE7;Q15155;P69849;Q5JPE7-2;Q5JPE7-3 NOMO2;NOMO1;NOMO3 Nodal modulator 2;Nodal modulator 1;Nodal modulator 3 yes no 0 0 1 0 By MS/MS By MS/MS 8 0 2 1 1 72.896 72.928 3 0.00011394 23491 20211116_3436_TMUAki_TMT10x_P_F8 82.102 65.569 3281600 6287500 147300 5430700 3347500 6982400 4529600 3208400 3320600 3396300 4029300 3056600 5863700 410270 5624000 3248400 6932700 4495300 3458200 3456200 3309300 3865000 1 1 1 1 1 1 1 1 1 1 1 3281600 6287500 147300 5430700 3347500 6982400 4529600 3208400 3320600 3396300 4029300 3056600 5863700 410270 5624000 3248400 6932700 4495300 3458200 3456200 3309300 3865000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 703910000 703910000 0 20882 1422 19186 108243;108244 131190;131191 131190 1915 2 VNAQDYKGQTAIHEACFGGR Carbamidomethyl (C) 2278.0549 0.054912477 18 A6NGH8 ANKRD61 Ankyrin repeat domain-containing protein 61 yes yes 0 1 0 1 By MS/MS By MS/MS 1.86 0.833 3 2 2 4 3 32.085 31.955 4;5 0.0074813 8218 20211116_3429_TMUAki_TMT10x_P_F2 53.779 24.966 1198700 2010200 15338 2472400 2613100 2308200 1543200 1632500 1850700 1475300 1923100 1116100 1877400 125150 2487200 2479100 2346400 1630800 1689200 1871900 1447300 1852900 9 9 6 9 9 9 9 9 9 9 9 712350 1196600 10684 1477000 2214500 1956600 1136500 1029300 1157300 902780 1106800 663290 1117600 82087 1494200 2096400 1942900 1209800 1089600 1174700 886910 1069300 5 5 3 5 5 5 5 5 5 5 5 486300 813550 4654.3 995380 398680 351600 406770 603140 693420 572490 816260 452830 759810 43060 992980 382730 403550 421050 599620 697250 560390 783610 4 4 3 4 4 4 4 4 4 4 4 821330000 535840000 285500000 20883 18 19187 108245;108246;108247;108248;108249;108250;108251 131192;131193;131194;131195;131196;131197 131193 1 6 VNATGPQFVSGVIVK Unmodified 1514.8457 0.84567819 1893 Q4G0J3;Q4G0J3-3;Q4G0J3-2 LARP7 La-related protein 7 yes no 0 0 0 0 By MS/MS 2 0 1 1 62.996 62.707 3 3.7809E-07 20817 20211116_3429_TMUAki_TMT10x_P_F2 116.86 95.305 3194100 4996800 37710 4706700 4945000 7457800 4257200 4664100 4237600 4077200 4275800 2974300 4661400 324480 4863300 4726500 7365100 4353600 4865600 4313300 4006200 4123500 1 1 1 1 1 1 1 1 1 1 1 3194100 4996800 37710 4706700 4945000 7457800 4257200 4664100 4237600 4077200 4275800 2974300 4661400 324480 4863300 4726500 7365100 4353600 4865600 4313300 4006200 4123500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 543750000 543750000 0 20884 1893 19188 108252 131198 131198 1 VNAVPRPIPEKK Unmodified 1346.8034 0.80341945 2876 Q9HD45 TM9SF3 Transmembrane 9 superfamily member 3 yes yes 0 0 0 2 By MS/MS By MS/MS 2 0.816 1 1 1 1 2 36.023 35.855 4 1.0636E-06 9843 20211116_3429_TMUAki_TMT10x_P_F2 120.87 98.844 1819400 2977300 19230 2754800 2944300 3109500 2221100 1977800 1887200 1837200 2288900 1694200 2777300 179140 2831400 2805800 3120400 2280500 2063800 1948800 1800100 2195600 2 2 1 2 2 2 2 2 2 2 2 1399000 2320000 19230 2143200 2541500 2764700 1772900 1563100 1498900 1461300 1760300 1302800 2164200 149910 2208200 2418800 2751200 1830100 1646800 1546200 1431400 1690000 1 1 1 1 1 1 1 1 1 1 1 420400 657290 0 611600 402780 344750 448190 414680 388250 375840 528620 391390 613150 29225 623170 386990 369240 450390 416930 402580 368660 505600 1 1 0 1 1 1 1 1 1 1 1 142050000 93943000 48108000 20885 2876 19189 108253;108254;108255 131199;131200 131199 2 VNDQEGREEFYVHYVGFNR Unmodified 2357.0825 0.082507436 2826 Q9H7Z6;Q9H7Z6-2 KAT8 Histone acetyltransferase KAT8 yes no 0 0 0 1 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 49.834 49.991 4 6.3977E-06 13515 20211116_3444_TMUAki_TMT10x_S_F5 86.8 70.115 4811900 8181000 131330 9470600 6923000 7910700 5500200 6298100 6226200 5905900 6744300 4481400 7638500 550900 9547200 6610300 8118800 5676000 6473200 6320700 5784100 6489900 2 2 2 2 2 2 2 2 2 2 2 2195700 3568300 81065 4028700 4289700 5070800 3005100 2697400 2871400 2600800 2992800 2045000 3331400 286920 4093000 4085800 5048200 3111200 2859500 2931400 2544100 2883300 1 1 1 1 1 1 1 1 1 1 1 2616200 4612600 50264 5441900 2633300 2839900 2495100 3600700 3354800 3305000 3751500 2436400 4307200 263990 5454200 2524500 3070700 2564700 3613700 3389400 3240100 3606700 1 1 1 1 1 1 1 1 1 1 1 1536700000 832660000 704050000 20886 2826 19190 108256;108257;108258 131201;131202 131202 2 VNDTIQIDLETGK Unmodified 1444.7409 0.74093835 1362 P62701 RPS4X 40S ribosomal protein S4, X isoform yes yes 0 0 0 0 By MS/MS By MS/MS 2.81 1.42 5 1 4 4 2 7 9 61.734 61.639 2;3 1.3871E-65 21868 20211116_3441_TMUAki_TMT10x_S_F3 332.53 276.1 91559000 148870000 483230 159940000 102980000 133160000 103820000 88164000 82792000 86903000 111300000 85251000 138950000 7797100 161990000 98768000 136290000 104610000 91872000 86158000 84926000 106480000 18 18 8 18 18 18 18 18 18 18 18 52540000 81829000 410350 90383000 64119000 98335000 63086000 51777000 48043000 49676000 64589000 48921000 76387000 4605000 91720000 61460000 98640000 63580000 54930000 50121000 48603000 61794000 10 10 5 10 10 10 10 10 10 10 10 39018000 67041000 72880 69561000 38863000 34822000 40732000 36387000 34749000 37226000 46707000 36330000 62566000 3192100 70267000 37308000 37653000 41033000 36942000 36037000 36323000 44687000 8 8 3 8 8 8 8 8 8 8 8 7115600000 4351300000 2764400000 20887 1362 19191 108259;108260;108261;108262;108263;108264;108265;108266;108267;108268;108269;108270;108271;108272;108273;108274 131203;131204;131205;131206;131207;131208;131209;131210;131211;131212;131213;131214;131215;131216;131217;131218;131219;131220;131221;131222;131223;131224;131225 131217 23 VNDTIQIDLETGKITDFIK Unmodified 2162.1471 0.14706475 1362 P62701 RPS4X 40S ribosomal protein S4, X isoform yes yes 0 0 0 1 By MS/MS By matching 4 0 2 1 1 77.99 77.974 3 0.00012641 25884 20211116_3431_TMUAki_TMT10x_P_F4 73.294 65.072 4756600 8490500 0 6832200 4598600 10745000 5497000 5654700 5026800 5843300 6137300 4428600 7916300 352910 7145600 4429400 10591000 5514300 6011800 5173900 5699100 5886100 1 1 0 1 1 1 1 1 1 1 1 4756600 8490500 0 6832200 4598600 10745000 5497000 5654700 5026800 5843300 6137300 4428600 7916300 352910 7145600 4429400 10591000 5514300 6011800 5173900 5699100 5886100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1698800000 1371300000 327490000 20888 1362 19192 108275;108276 131226 131226 1 VNEAREELMR Oxidation (M) 1261.6085 0.60848439 1301 P61204;P84077;P61204-2 ARF3;ARF1 ADP-ribosylation factor 3;ADP-ribosylation factor 1 yes no 0 0 1 1 By MS/MS By MS/MS 3 0.707 1 2 1 3 1 31.314 31.24 3 0.002608 9525 20211116_3441_TMUAki_TMT10x_S_F3 68.107 51.854 548160 796550 0 917960 1197500 1115900 716590 563060 638970 530020 719100 510210 743720 31840 930850 1134700 1112100 749610 599390 656280 519010 691210 1 1 0 1 1 1 1 1 1 1 1 548160 796550 0 917960 1197500 1115900 716590 563060 638970 530020 719100 510210 743720 31840 930850 1134700 1112100 749610 599390 656280 519010 691210 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 208950000 208950000 0 20889 1301 19193 108277;108278;108279;108280 131227;131228 131228 1756 2 VNEAREELMR Unmodified 1245.6136 0.61356977 1301 P61204;P84077;P61204-2 ARF3;ARF1 ADP-ribosylation factor 3;ADP-ribosylation factor 1 yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 34.585 34.478 3 0.0014892 8208 20211116_3431_TMUAki_TMT10x_P_F4 81.002 58.282 2861400 4252100 21956 4657600 4008800 3008400 3059300 1959100 1903500 1761700 3117900 2664400 3969200 273760 4698200 3821300 3142900 3117100 2038900 2030100 1728700 2970200 2 2 2 2 2 2 2 2 2 2 2 947700 1412000 12731 1725300 2148600 1679900 1187600 871570 882260 786780 1239000 882500 1318800 107250 1737300 2036800 1696000 1245400 924410 923560 771900 1184200 1 1 1 1 1 1 1 1 1 1 1 1913700 2840000 9224.9 2932300 1860300 1328500 1871800 1087600 1021200 974910 1879000 1781900 2650400 166500 2960900 1784600 1446900 1871700 1114500 1106600 956790 1786000 1 1 1 1 1 1 1 1 1 1 1 81237000 55787000 25450000 20890 1301 19193 108281;108282 131229;131230 131229 2 VNESSHYDLAFTDVHFKPGQIR Unmodified 2559.2506 0.2506354 848 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 52.765 52.94 5 3.1812E-06 17004 20211116_3446_TMUAki_TMT10x_S_F7 82.267 70.31 8541500 14367000 192340 14789000 10102000 11438000 9412700 10944000 9816000 10011000 11638000 7954500 13407000 909260 15007000 9680800 11847000 9596300 11124000 10033000 9815900 11171000 3 3 3 3 3 3 3 3 3 3 3 2877900 4704800 50190 4718900 3787800 5535300 3620000 3982200 3507700 3422000 3623700 2680000 4390200 298110 4825300 3630700 5553800 3677200 4110400 3577500 3365200 3492100 1 1 1 1 1 1 1 1 1 1 1 5663700 9661900 142150 10070000 6314400 5902200 5792700 6962100 6308200 6589200 8014700 5274500 9017100 611150 10182000 6050000 6293700 5919100 7014000 6455500 6450700 7678600 2 2 2 2 2 2 2 2 2 2 2 1131900000 292930000 838980000 20891 848 19194 108283;108284;108285 131231;131232;131233 131232 3 VNESSLNWPQLENIGNFIK Unmodified 2201.1117 0.1116823 1802 Q15417;Q15417-2 CNN3 Calponin-3 yes no 0 0 0 0 By matching By MS/MS 8 0 2 1 1 79.654 79.65 3 9.0787E-10 25674 20211116_3447_TMUAki_TMT10x_S_F8 120.9 103.62 2891700 5602200 44179 5221700 3152900 3637500 4872100 2073200 1941000 2331600 3587100 2692800 5226000 284570 5330200 3069000 3768200 4761400 2194500 2161300 2266500 3409300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2891700 5602200 44179 5221700 3152900 3637500 4872100 2073200 1941000 2331600 3587100 2692800 5226000 284570 5330200 3069000 3768200 4761400 2194500 2161300 2266500 3409300 1 1 1 1 1 1 1 1 1 1 1 2102700000 909710000 1193000000 20892 1802 19195 108286;108287 131234 131234 1 VNFAMNVGK Unmodified 978.49569 0.49568646 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 By MS/MS By MS/MS 2.8 2.64 2 2 1 3 2 54.768 54.582 2 2.4423E-05 17434 20211116_3429_TMUAki_TMT10x_P_F2 155.75 113.16 60034000 95021000 94061 112030000 71982000 53978000 58229000 22933000 19039000 30327000 60634000 55893000 88728000 4598200 112220000 68638000 57872000 58570000 25105000 22560000 29314000 57204000 5 5 2 5 5 5 5 5 5 5 5 26256000 39630000 30210 46655000 41748000 35005000 30333000 9650700 8237400 12760000 24554000 24445000 37006000 2215900 46926000 39731000 35810000 30681000 11185000 9926000 12334000 23181000 2 2 1 2 2 2 2 2 2 2 2 33778000 55390000 63850 65370000 30234000 18973000 27896000 13282000 10802000 17567000 36081000 31448000 51723000 2382300 65289000 28907000 22062000 27889000 13920000 12634000 16980000 34023000 3 3 1 3 3 3 3 3 3 3 3 2586300000 1617700000 968540000 20893 670;671 19196 108288;108289;108290;108291;108292 131235;131236;131237;131238;131239;131240 131236 6 VNFAMNVGK Oxidation (M) 994.4906 0.49060109 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 1 0 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 45.413 45.549 2 0.0003057 14269 20211116_3439_TMUAki_TMT10x_S_F1 98.629 75.61 2081100 3312300 0 3446900 5122900 4321900 2663000 2269200 2204000 1906300 2844900 1937700 3091300 215080 3520000 4850300 4302800 2815600 2399900 2285000 1876700 2724500 1 1 0 1 1 1 1 1 1 1 1 2081100 3312300 0 3446900 5122900 4321900 2663000 2269200 2204000 1906300 2844900 1937700 3091300 215080 3520000 4850300 4302800 2815600 2399900 2285000 1876700 2724500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 732030000 732030000 0 20894 670;671 19196 108293;108294;108295 131241;131242;131243 131242 741 3 VNFHMFDVGGQRDER Oxidation (M) 1821.8217 0.82166506 1393 P63092;Q5JWF2;P63092-4;Q5JWF2-2;P63092-3;P63092-2;P38405;P38405-2 GNAS;GNAL Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(olf) subunit alpha yes no 0 0 1 1 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 39.576 39.641 4 0.011225 9691 20211116_3444_TMUAki_TMT10x_S_F5 55.815 50.521 1351500 2316200 27236 2583500 2101100 1732400 1567200 1806800 1848100 1505800 2103200 1258500 2162300 147930 2604000 2002900 1819000 1626300 1824200 1876800 1483100 2021000 2 2 2 2 2 2 2 2 2 2 2 398590 639290 7034 777590 1141800 967780 589280 619400 637960 479610 645780 371180 597040 50011 786340 1081400 966350 628130 643160 647160 474170 622720 1 1 1 1 1 1 1 1 1 1 1 952860 1677000 20202 1806000 959260 764610 977950 1187400 1210100 1026200 1457400 887360 1565300 97916 1817700 921480 852660 998190 1181100 1229700 1008900 1398200 1 1 1 1 1 1 1 1 1 1 1 263450000 77633000 185810000 20895 1393 19197 108296;108297 131244;131245 131245 1872 2 VNFHMFDVGGQRDER Unmodified 1805.8268 0.82675044 1393 P63092;Q5JWF2;P63092-4;Q5JWF2-2;P63092-3;P63092-2;P38405;P38405-2 GNAS;GNAL Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(olf) subunit alpha yes no 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 48.103 48.251 4 4.9823E-14 13112 20211116_3445_TMUAki_TMT10x_S_F6 144.4 133.59 3886600 6195200 20118 7535000 6234500 6499300 4326600 4598800 4152300 3943800 5533400 3618800 5785800 351430 7576800 5929700 6642300 4483000 4752000 4280900 3878700 5295100 4 4 2 4 4 4 4 4 4 4 4 2203600 3291100 6291.2 4124000 4623100 5227300 2828900 2677000 2514200 2269200 3236500 2051700 3074100 210690 4164900 4387400 5199800 2953600 2838200 2597200 2233000 3099800 2 2 1 2 2 2 2 2 2 2 2 1683000 2904000 13827 3411000 1611300 1272100 1497700 1921800 1638100 1674700 2296900 1567100 2711700 140730 3412000 1542300 1442400 1529400 1913800 1683700 1645700 2195300 2 2 1 2 2 2 2 2 2 2 2 838790000 423700000 415090000 20896 1393 19197 108298;108299;108300;108301 131246;131247;131248 131248 3 VNFLPEIITLSK Unmodified 1372.7966 0.79660274 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.43 3.11 1 3 3 4 3 80.036 80.025 2;3 3.9305E-12 26419 20211116_3436_TMUAki_TMT10x_P_F8 132.47 107.62 37016000 56217000 46326 59199000 40922000 46769000 44269000 26718000 26826000 29646000 42275000 34465000 52468000 3061000 59996000 39318000 47961000 44189000 28264000 28602000 28833000 40303000 4 4 1 4 4 4 4 4 4 4 4 17549000 26136000 0 27453000 16641000 27205000 18332000 12344000 13221000 14518000 19747000 16340000 24393000 1361800 27910000 15993000 27396000 18348000 13365000 13906000 14089000 18848000 2 2 0 2 2 2 2 2 2 2 2 19467000 30081000 46326 31745000 24281000 19564000 25938000 14374000 13605000 15128000 22528000 18126000 28075000 1699300 32086000 23325000 20565000 25842000 14899000 14697000 14744000 21455000 2 2 1 2 2 2 2 2 2 2 2 5144300000 2711000000 2433400000 20897 1695 19198 108302;108303;108304;108305;108306;108307;108308 131249;131250;131251;131252;131253 131251 5 VNFPENGFLSPDK Unmodified 1462.7092 0.70924429 889 P31689 DNAJA1 DnaJ homolog subfamily A member 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.17 0.687 1 3 2 2 4 67.346 67.497 2;3 6.8009E-09 21028 20211116_3445_TMUAki_TMT10x_S_F6 128.68 102.08 34575000 64671000 674020 51275000 45739000 80438000 48852000 68687000 66052000 70452000 57479000 32197000 60295000 3588000 53692000 43971000 79882000 49923000 70482000 66140000 68734000 55713000 5 5 4 5 5 5 5 5 5 5 5 15188000 29948000 248440 20039000 22152000 55576000 27808000 40979000 37399000 41007000 28905000 14143000 27907000 1588200 21675000 21398000 54097000 28208000 42402000 37326000 40049000 28146000 2 2 2 2 2 2 2 2 2 2 2 19387000 34723000 425580 31236000 23586000 24862000 21044000 27708000 28654000 29445000 28574000 18054000 32388000 1999700 32017000 22573000 25785000 21715000 28080000 28815000 28686000 27567000 3 3 2 3 3 3 3 3 3 3 3 2436700000 949730000 1486900000 20898 889 19199 108309;108310;108311;108312;108313;108314 131254;131255;131256;131257;131258;131259 131258 6 VNFPENGFLSPDKLSLLEK Unmodified 2146.131 0.13102076 889 P31689 DNAJA1 DnaJ homolog subfamily A member 1 yes yes 0 0 0 1 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 78.196 78.198 3 2.027E-12 27482 20211116_3439_TMUAki_TMT10x_S_F1 133.09 122.62 72112000 131400000 800290 74720000 98254000 108190000 92588000 77231000 78493000 81828000 97314000 67140000 122400000 6013500 80730000 94047000 107460000 93776000 80223000 81137000 79728000 93293000 6 6 3 6 6 6 6 6 6 6 6 15992000 27979000 286760 17976000 14759000 29592000 19352000 18890000 17503000 17850000 20967000 14893000 26070000 1559600 19219000 14284000 29190000 19332000 19715000 18010000 17476000 20119000 2 2 1 2 2 2 2 2 2 2 2 56119000 103420000 513530 56744000 83495000 78597000 73237000 58341000 60989000 63978000 76347000 52248000 96331000 4453900 61512000 79763000 78266000 74444000 60508000 63127000 62252000 73174000 4 4 2 4 4 4 4 4 4 4 4 16581000000 8677700000 7903300000 20899 889 19200 108315;108316;108317;108318;108319;108320 131260;131261;131262;131263;131264;131265 131262 6 VNFTVDQIR Unmodified 1090.5771 0.57710791 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.71 1.03 1 2 2 2 4 3 51.234 51.513 2 5.5625E-06 14003 20211116_3434_TMUAki_TMT10x_P_F6 182.76 117.53 89077000 144450000 367000 174160000 161680000 147870000 86836000 147340000 143880000 111520000 136840000 82933000 134900000 7023100 175180000 153090000 152250000 93761000 148760000 143630000 110390000 132220000 9 9 3 9 9 9 9 9 9 9 9 44075000 66003000 231230 82022000 123700000 120340000 58018000 70153000 67166000 54903000 63631000 41035000 61648000 4388700 83118000 116930000 119100000 62568000 73403000 67805000 54249000 61492000 5 5 2 5 5 5 5 5 5 5 5 45002000 78451000 135770 92142000 37980000 27535000 28818000 77184000 76718000 56615000 73210000 41898000 73254000 2634400 92067000 36154000 33152000 31193000 75354000 75826000 56141000 70732000 4 4 1 4 4 4 4 4 4 4 4 9990500000 5419700000 4570800000 20900 653 19201 108321;108322;108323;108324;108325;108326;108327 131266;131267;131268;131269;131270;131271;131272;131273;131274 131269 9 VNGGLNLSR Unmodified 928.50903 0.50902834 183 O15355 PPM1G Protein phosphatase 1G yes yes 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 34.992 35.352 2 0.039939 9488 20211116_3435_TMUAki_TMT10x_P_F7 57.859 29.752 128590 195780 731.44 213480 242960 309460 141610 207900 237040 186600 206490 119730 182750 12944 217970 230460 307050 151900 215870 235880 183120 200140 1 1 1 1 1 1 1 1 1 1 1 128590 195780 731.44 213480 242960 309460 141610 207900 237040 186600 206490 119730 182750 12944 217970 230460 307050 151900 215870 235880 183120 200140 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10369000 10369000 0 20901 183 19202 108328;108329 131275 131275 1 VNGRPLEMIEPR Oxidation (M) 1425.7398 0.73983291 1340 P62249 RPS16 40S ribosomal protein S16 yes yes 0 0 1 1 By MS/MS By MS/MS 4.75 1.48 1 2 2 2 4 1 7 5 35.709 35.697 2;3 9.1778E-07 8162 20211116_3445_TMUAki_TMT10x_S_F6 120.59 101.01 6748800 10322000 179110 12016000 11577000 12996000 7644900 7403200 9246700 7900500 9223200 6284700 9637500 746280 12154000 11010000 13054000 8009700 7824200 9336000 7695600 8898000 13 13 6 13 13 13 13 13 13 13 13 3991100 5859800 149730 6797300 9330600 10411000 5114600 4473200 5791100 4991000 5425600 3717100 5471300 534950 6922200 8849100 10250000 5429400 4863200 5848900 4853200 5245200 5 5 3 5 5 5 5 5 5 5 5 2757700 4461800 29387 5219100 2246500 2585100 2530300 2930000 3455600 2909500 3797500 2567600 4166200 211330 5231500 2160500 2803700 2580400 2961000 3487100 2842400 3652800 8 8 3 8 8 8 8 8 8 8 8 1263000000 1161000000 102020000 20902 1340 19203 108330;108331;108332;108333;108334;108335;108336;108337;108338;108339;108340;108341 131276;131277;131278;131279;131280;131281;131282;131283;131284;131285;131286 131282 1796 11 VNGRPLEMIEPR Unmodified 1409.7449 0.74491829 1340 P62249 RPS16 40S ribosomal protein S16 yes yes 0 0 0 1 By MS/MS By MS/MS 5.5 1.12 2 2 2 2 4 4 43.07 43.297 3 2.9343E-09 10710 20211116_3434_TMUAki_TMT10x_P_F6 153.39 110.08 16294000 26068000 124040 32254000 25681000 21250000 17388000 13898000 13043000 13577000 20658000 15172000 24348000 1525400 32303000 24419000 22161000 17937000 14492000 13730000 13274000 19693000 10 10 6 10 10 10 10 10 10 10 10 8600600 13574000 37809 17031000 19357000 15968000 11647000 7103100 6767800 6869400 10519000 8007800 12679000 836400 17114000 18364000 16133000 12066000 7662400 7231700 6718600 10031000 5 5 2 5 5 5 5 5 5 5 5 7693600 12494000 86228 15223000 6324800 5281800 5740700 6794900 6275700 6708100 10140000 7164100 11669000 688950 15189000 6054400 6027900 5870100 6829700 6498100 6555000 9661700 5 5 4 5 5 5 5 5 5 5 5 2231200000 1337800000 893400000 20903 1340 19203 108342;108343;108344;108345;108346;108347;108348;108349 131287;131288;131289;131290;131291;131292;131293;131294;131295;131296 131290 10 VNGVDDAANFR Unmodified 1176.5523 0.55234972 245 O43795;O43795-2 MYO1B Unconventional myosin-Ib yes no 0 0 0 0 By MS/MS 3 0 1 1 37.613 37.639 2 0.0075689 10949 20211116_3430_TMUAki_TMT10x_P_F3 67.548 49.145 104670 161150 0 186430 206850 209900 135430 103810 100640 103220 151220 97446 150460 9068.2 188750 196470 210000 140030 110880 105700 100840 144310 1 1 0 1 1 1 1 1 1 1 1 104670 161150 0 186430 206850 209900 135430 103810 100640 103220 151220 97446 150460 9068.2 188750 196470 210000 140030 110880 105700 100840 144310 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10984000 10984000 0 20904 245 19204 108350 131297 131297 1 VNHVDPEEEIVEHGAMEER Oxidation (M) 2233.991 0.99097482 2542 Q96R06 SPAG5 Sperm-associated antigen 5 yes yes 0 0 1 0 By MS/MS By MS/MS 1 0 3 1 2 38.566 38.491 3;4 1.1093E-12 9341 20211116_3428_TMUAki_TMT10x_P_F1 135.38 122.72 1682800 2358300 48599 3111400 3034300 2842300 1816700 2590200 2594300 1995100 2787800 1567200 2203400 158960 3116900 2881500 2906500 1930500 2628400 2612100 1973000 2683300 4 4 2 4 4 4 4 4 4 4 4 1025300 1474500 48599 1870900 2568700 2353400 1475600 1672300 1566800 1165200 1695000 954970 1377400 151910 1887800 2438500 2352500 1556800 1719500 1594500 1158800 1631100 2 2 2 2 2 2 2 2 2 2 2 657590 883800 0 1240500 465550 488900 341050 917850 1027500 829950 1092800 612250 826010 7054.9 1229100 442990 554060 373700 908920 1017600 814190 1052200 2 2 0 2 2 2 2 2 2 2 2 1050600000 749740000 300890000 20905 2542 19205 108351;108352;108353 131298;131299;131300;131301 131298 2793 4 VNHVDPEEEIVEHGAMEER Unmodified 2217.9961 0.99606019 2542 Q96R06 SPAG5 Sperm-associated antigen 5 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 42.598 42.508 4 5.8735E-05 11023 20211116_3428_TMUAki_TMT10x_P_F1 77.959 71.797 1223000 2050400 9023.6 2434500 2048700 2083000 1354800 1666900 1695500 1493400 1692100 1138700 1914700 114880 2451200 1947100 2134400 1421100 1710600 1709800 1465700 1632400 2 2 1 2 2 2 2 2 2 2 2 683210 1170800 9023.6 1423300 1578100 1675100 907740 980410 971930 835560 972270 636200 1093400 77585 1437900 1496800 1675400 957800 1027500 985980 822020 937900 1 1 1 1 1 1 1 1 1 1 1 539790 879610 0 1011200 470670 407880 447070 686480 723520 657830 719870 502540 821270 37296 1013200 450290 458990 463280 683050 723830 643650 694540 1 1 0 1 1 1 1 1 1 1 1 166150000 120420000 45728000 20906 2542 19205 108354;108355 131302;131303 131302 2 VNIAFNYDMPEDSDTYLHR Unmodified 2299.0215 0.021546663 1665 Q13838;Q13838-2 DDX39B Spliceosome RNA helicase DDX39B yes no 0 0 0 0 By MS/MS By MS/MS 4.15 1.1 1 2 6 2 2 9 4 70.106 70.002 3 5.6648E-32 23488 20211116_3441_TMUAki_TMT10x_S_F3 194.05 176.47 28352000 49656000 318930 48509000 35370000 43764000 35149000 28059000 25510000 27909000 35690000 26400000 46330000 2564600 49498000 33916000 44523000 35366000 29316000 26735000 27263000 34113000 14 14 7 15 15 15 14 14 14 14 15 16633000 28998000 288750 27592000 20775000 31683000 21995000 16331000 14122000 15922000 19816000 15488000 27053000 1665800 28309000 19965000 31680000 22003000 17367000 14913000 15567000 18940000 8 8 6 9 9 9 8 8 8 8 9 11720000 20658000 30184 20918000 14595000 12080000 13153000 11728000 11388000 11987000 15873000 10911000 19277000 898820 21189000 13951000 12844000 13363000 11949000 11822000 11696000 15174000 6 6 1 6 6 6 6 6 6 6 6 9247900000 3907200000 5340700000 20907 1665 19206 108356;108357;108358;108359;108360;108361;108362;108363;108364;108365;108366;108367;108368 131304;131305;131306;131307;131308;131309;131310;131311;131312;131313;131314;131315;131316;131317;131318;131319;131320;131321;131322 131317 19 VNIAFNYDMPEDSDTYLHR Oxidation (M) 2315.0165 0.016461285 1665 Q13838;Q13838-2 DDX39B Spliceosome RNA helicase DDX39B yes no 0 0 1 0 By MS/MS By MS/MS 4 1.11 5 5 2 1 6 7 60.133 60.048 3;4 3.6681E-31 21144 20211116_3441_TMUAki_TMT10x_S_F3 177.67 161.78 34549000 62915000 260420 55499000 43780000 69724000 42606000 55090000 51785000 50954000 49121000 32170000 58678000 2906300 57355000 41958000 69824000 43563000 56626000 52186000 49935000 47467000 13 13 8 13 13 13 13 13 13 13 13 20536000 37127000 232890 32249000 27720000 53669000 28068000 32423000 31553000 30673000 27826000 19122000 34625000 1962400 33564000 26598000 52876000 28560000 33985000 31815000 30029000 26958000 7 7 4 7 7 7 7 7 7 7 7 14013000 25788000 27526 23250000 16060000 16055000 14539000 22667000 20233000 20281000 21295000 13047000 24053000 943900 23791000 15360000 16948000 15003000 22641000 20372000 19906000 20509000 6 6 4 6 6 6 6 6 6 6 6 21614000000 14011000000 7602800000 20908 1665 19206 108369;108370;108371;108372;108373;108374;108375;108376;108377;108378;108379;108380;108381 131323;131324;131325;131326;131327;131328;131329;131330;131331;131332;131333;131334;131335;131336;131337 131332 2235 15 VNIEGGAIALGHPLGASGCR Unmodified 1947.9949 0.9948784 2706 Q9BWD1;Q9BWD1-2 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes no 0 0 0 0 By MS/MS By MS/MS 5.62 2.34 1 2 3 2 4 4 52.93 52.993 3 3.3546E-25 15361 20211116_3436_TMUAki_TMT10x_P_F8 177.09 166.24 21631000 37480000 509430 41509000 30650000 38551000 24853000 28996000 28469000 27410000 30580000 20144000 34988000 2343800 42017000 29270000 39241000 25624000 29916000 28879000 26835000 29434000 11 11 8 11 11 11 11 11 11 11 11 12582000 20563000 335810 23132000 21683000 29218000 16950000 16529000 15687000 15178000 17317000 11718000 19197000 1475900 23508000 20692000 29104000 17402000 17406000 16072000 14880000 16654000 6 6 5 6 6 6 6 6 6 6 6 9048900 16917000 173620 18377000 8966600 9333400 7902600 12467000 12782000 12231000 13264000 8426400 15791000 867850 18509000 8578600 10137000 8222600 12510000 12807000 11955000 12780000 5 5 3 5 5 5 5 5 5 5 5 6151500000 3795500000 2356000000 20909 2706 19207 108382;108383;108384;108385;108386;108387;108388;108389 131338;131339;131340;131341;131342;131343;131344;131345;131346;131347;131348;131349 131343 12 VNIFGVESGKK Unmodified 1176.6503 0.65027285 2758 Q9GZS3 WDR61 WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed yes yes 0 0 0 1 By MS/MS 1 0 1 1 51.331 51.331 3 0.0011467 14573 20211116_3428_TMUAki_TMT10x_P_F1 79.875 60.604 2980000 4625100 0 5759400 8886500 6644500 4210600 3603500 3957600 3230200 4736800 2774400 4319900 293580 5808600 8400900 6646100 4507600 3806100 4064900 3170200 4545300 1 1 0 1 1 1 1 1 1 1 1 2980000 4625100 0 5759400 8886500 6644500 4210600 3603500 3957600 3230200 4736800 2774400 4319900 293580 5808600 8400900 6646100 4507600 3806100 4064900 3170200 4545300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 396870000 396870000 0 20910 2758 19208 108390 131350 131350 1 VNIIGEVVDQGSTNLK Unmodified 1684.8996 0.89956426 3103 Q9UEY8;Q9UEY8-2 ADD3 Gamma-adducin yes no 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 73.819 73.788 3 0.00017669 23331 20211116_3444_TMUAki_TMT10x_S_F5 78.441 60.077 1395500 2445700 0 2335100 1882900 1408400 1596900 1552600 1652000 1580000 1882900 1299300 2281700 114700 2376200 1797700 1495200 1636500 1572100 1686400 1541900 1809200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1395500 2445700 0 2335100 1882900 1408400 1596900 1552600 1652000 1580000 1882900 1299300 2281700 114700 2376200 1797700 1495200 1636500 1572100 1686400 1541900 1809200 1 1 0 1 1 1 1 1 1 1 1 511570000 0 511570000 20911 3103 19209 108391;108392 131351 131351 1 VNIIPLIAK Unmodified 979.643 0.64300263 1838 Q16181;Q16181-2;Q6ZU15 SEPT7;SEPT14 Septin-7;Septin-14 yes no 0 0 0 0 By MS/MS By MS/MS 3.13 0.618 2 9 4 7 8 72.74 72.568 2;3 1.0685E-05 24694 20211116_3430_TMUAki_TMT10x_P_F3 155.75 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20912 1838 19210 108393;108394;108395;108396;108397;108398;108399;108400;108401;108402;108403;108404;108405;108406;108407 131352;131353;131354;131355;131356;131357;131358;131359;131360;131361;131362;131363;131364;131365;131366 131352 15 VNILEVASGAVLR Unmodified 1339.7823 0.78234966 1563 Q12788 TBL3 Transducin beta-like protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 77.922 77.872 2 6.2041E-06 26888 20211116_3429_TMUAki_TMT10x_P_F2 110.38 78.237 3104400 5075700 4417.1 4479500 2960000 5901400 3641800 3629700 3203800 3645800 3990300 2890600 4733900 259470 4633200 2855600 5873200 3644800 3805600 3306400 3560000 3825000 1 1 1 1 1 1 1 1 1 1 1 3104400 5075700 4417.1 4479500 2960000 5901400 3641800 3629700 3203800 3645800 3990300 2890600 4733900 259470 4633200 2855600 5873200 3644800 3805600 3306400 3560000 3825000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 335290000 335290000 0 20913 1563 19211 108408;108409;108410 131367;131368;131369 131368 3 VNIVFNYDMPEDSDTYLHR Oxidation (M) 2343.0478 0.047761414 63 O00148 DDX39A ATP-dependent RNA helicase DDX39A yes yes 0 0 1 0 By MS/MS By MS/MS 4.56 1.07 2 2 3 2 4 5 64.034 64.002 3 4.3945E-13 19161 20211116_3444_TMUAki_TMT10x_S_F5 138.55 129.29 27543000 45865000 1005400 47997000 32933000 42553000 33499000 30915000 29001000 30716000 34666000 25652000 42805000 3242400 48733000 31649000 43424000 33811000 32014000 29901000 30007000 33266000 11 11 9 11 11 11 11 11 11 11 11 15220000 25709000 635380 25866000 17638000 30348000 19933000 17568000 15728000 17615000 19042000 14176000 23990000 1878300 26443000 17008000 30353000 19968000 18508000 16302000 17202000 18267000 6 6 5 6 6 6 6 6 6 6 6 12323000 20156000 369980 22131000 15294000 12205000 13566000 13347000 13273000 13101000 15624000 11477000 18815000 1364100 22289000 14641000 13072000 13842000 13506000 13599000 12805000 14999000 5 5 4 5 5 5 5 5 5 5 5 5550700000 2551300000 2999500000 20914 63 19212 108411;108412;108413;108414;108415;108416;108417;108418;108419 131370;131371;131372;131373;131374;131375;131376;131377;131378;131379;131380;131381 131380 30 12 VNIVFNYDMPEDSDTYLHR Unmodified 2327.0528 0.052846792 63 O00148 DDX39A ATP-dependent RNA helicase DDX39A yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 69.339 69.388 3 0.0025365 22329 20211116_3431_TMUAki_TMT10x_P_F4 58.869 48.235 14482000 20346000 13995 25135000 11299000 13838000 11602000 6795300 6482800 8172800 13551000 13484000 19003000 1089900 25135000 10837000 14636000 11594000 7305600 7069900 7925200 12854000 3 3 1 3 3 3 3 3 3 3 3 6967300 8780400 13995 10983000 5588800 7276800 5735200 2461200 2453700 3044100 5566300 6487400 8201300 571370 10994000 5363300 7533500 5708200 2762900 2750300 2949000 5273300 1 1 1 1 1 1 1 1 1 1 1 7514900 11566000 0 14152000 5709800 6561000 5866800 4334100 4029000 5128700 7984900 6996500 10802000 518520 14141000 5473600 7102100 5885800 4542800 4319600 4976300 7580300 2 2 0 2 2 2 2 2 2 2 2 1504500000 712730000 791810000 20915 63 19212 108420;108421 131382;131383;131384 131382 3 VNIVPVIAK Unmodified 951.6117 0.6117025 1752 Q15019;Q15019-2;Q15019-3 SEPT2 Septin-2 yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 61.42 61.156 2 2.0406E-05 18878 20211116_3440_TMUAki_TMT10x_S_F2 145.63 66.165 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20916 1752 19213 108422;108423;108424 131385;131386;131387 131387 3 VNLAELFK Unmodified 932.53312 0.53311783 860 P30044;P30044-2;P30044-3 PRDX5 Peroxiredoxin-5, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.38 2.69 2 1 1 2 2 5 3 76.312 76.319 2 0.00043419 24847 20211116_3436_TMUAki_TMT10x_P_F8 148.05 93.505 78914000 115490000 1114200 142140000 73465000 82006000 78935000 54159000 57353000 61282000 80610000 73485000 107860000 7504600 142220000 70647000 86626000 79113000 56683000 60116000 59558000 77041000 7 7 7 7 7 7 7 7 7 7 7 35521000 50941000 287400 62067000 31813000 48049000 33359000 24460000 25885000 27701000 35105000 33076000 47575000 3160900 62323000 30560000 49283000 33525000 26157000 26988000 26920000 33579000 3 3 3 3 3 3 3 3 3 3 3 43393000 64547000 826780 80069000 41653000 33958000 45577000 29698000 31468000 33581000 45505000 40409000 60287000 4343700 79897000 40087000 37342000 45588000 30527000 33129000 32637000 43462000 4 4 4 4 4 4 4 4 4 4 4 7433900000 3699700000 3734200000 20917 860 19214 108425;108426;108427;108428;108429;108430;108431;108432 131388;131389;131390;131391;131392;131393;131394;131395 131391 8 VNLEVIKPWITK Unmodified 1438.8548 0.85478632 2165 Q8IYB3;Q8IYB3-2 SRRM1 Serine/arginine repetitive matrix protein 1 yes no 0 0 0 1 By MS/MS By matching 4 0 2 1 1 74.218 74.181 3 0.044869 24318 20211116_3431_TMUAki_TMT10x_P_F4 43.914 23.532 6310300 9631700 152210 11302000 7619600 11983000 8143200 5300500 5781100 6035100 7459700 5876600 8993700 683360 11422000 7328400 12016000 8159500 5748500 6044200 5864000 7144100 1 1 1 1 1 1 1 1 1 1 1 6310300 9631700 152210 11302000 7619600 11983000 8143200 5300500 5781100 6035100 7459700 5876600 8993700 683360 11422000 7328400 12016000 8159500 5748500 6044200 5864000 7144100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 614280000 292850000 321430000 20918 2165 19215 108433;108434 131396 131396 1 VNLFTDFDK Unmodified 1097.5393 0.53932542 1249 P55884;P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 71.726 71.813 2 6.7835E-05 22755 20211116_3445_TMUAki_TMT10x_S_F6 144.65 101.83 85723000 140440000 262900 150160000 91894000 100870000 81858000 64310000 67041000 71325000 96341000 79812000 131080000 6677700 151760000 87826000 104980000 83098000 67442000 69891000 69371000 92029000 8 8 3 8 8 8 8 8 8 8 8 34436000 53990000 108800 58886000 42763000 59877000 38837000 26669000 26481000 29120000 39123000 32063000 50397000 2912400 59742000 40900000 60191000 39217000 28865000 27929000 28339000 37349000 4 4 2 4 4 4 4 4 4 4 4 51287000 86445000 154090 91271000 49131000 40996000 43021000 37641000 40560000 42205000 57218000 47750000 80681000 3765300 92018000 46926000 44789000 43882000 38577000 41961000 41032000 54680000 4 4 1 4 4 4 4 4 4 4 4 6828700000 3689400000 3139300000 20919 1249 19216 108435;108436;108437;108438;108439;108440 131397;131398;131399;131400;131401;131402;131403;131404 131402 8 VNLLEMDDKILVDFR Unmodified 1818.955 0.95497065 130 O14757;O14757-2 CHEK1 Serine/threonine-protein kinase Chk1 yes no 0 0 0 1 By MS/MS 2 0.816 1 1 1 3 50.465 50.214 4 0.023602 17196 20211116_3441_TMUAki_TMT10x_S_F3 48.704 9.9051 6078700 13625000 96122 9282800 6884200 5162200 5811500 7962800 7147500 6631700 8401400 5660600 12697000 604830 9715000 6579800 5576000 5992300 7914900 7257400 6531700 8065700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6078700 13625000 96122 9282800 6884200 5162200 5811500 7962800 7147500 6631700 8401400 5660600 12697000 604830 9715000 6579800 5576000 5992300 7914900 7257400 6531700 8065700 2 2 2 2 2 2 2 2 2 2 2 1409700000 0 1409700000 20920 130 19217 108441;108442;108443 131405 131405 1 VNLLSFTGSTQVGK Unmodified 1449.7827 0.78274359 1098 P49419-2;P49419;P49419-4 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS 2.82 0.716 4 5 2 6 5 69.939 69.688 2;3 4.6572E-43 22410 20211116_3431_TMUAki_TMT10x_P_F4 263.74 225.65 56019000 94035000 318090 86576000 66379000 86166000 64061000 58350000 55702000 58014000 67550000 52157000 87716000 4465500 88843000 63568000 87181000 64842000 60720000 57453000 56674000 64796000 12 12 6 12 12 12 12 12 12 12 12 33121000 53415000 169080 49443000 37067000 60946000 40501000 33877000 32609000 33739000 38781000 30838000 49827000 2692900 50892000 35621000 60770000 40658000 35806000 33739000 32957000 37220000 7 7 3 7 7 7 7 7 7 7 7 22898000 40619000 149010 37134000 29313000 25220000 23560000 24473000 23093000 24276000 28769000 21319000 37889000 1772600 37950000 27948000 26411000 24184000 24914000 23715000 23717000 27577000 5 5 3 5 5 5 5 5 5 5 5 8038300000 3500700000 4537600000 20921 1098 19218 108444;108445;108446;108447;108448;108449;108450;108451;108452;108453;108454 131406;131407;131408;131409;131410;131411;131412;131413;131414;131415;131416;131417;131418;131419;131420 131414 15 VNLLSVLEAAK Unmodified 1155.6863 0.68632401 2646 Q9BRX8;Q9BRX8-2 FAM213A Redox-regulatory protein FAM213A yes no 0 0 0 0 By MS/MS By MS/MS 5.14 3.31 2 1 4 3 4 79.46 79.444 2;3 3.4291E-14 28003 20211116_3439_TMUAki_TMT10x_S_F1 180.97 131.25 30131000 48121000 325270 49882000 28842000 35018000 32960000 18877000 21609000 22642000 32928000 28057000 44908000 2696200 50541000 27772000 36228000 32866000 20120000 22881000 21958000 31414000 6 6 3 6 6 6 6 6 6 6 6 16760000 26208000 140260 27019000 14596000 23372000 16471000 10381000 12343000 12597000 17915000 15605000 24458000 1421200 27452000 14046000 23743000 16481000 11277000 12935000 12212000 17110000 3 3 1 3 3 3 3 3 3 3 3 13371000 21913000 185010 22863000 14246000 11646000 16490000 8496000 9265300 10045000 15013000 12451000 20451000 1275000 23089000 13726000 12485000 16385000 8843500 9945900 9746500 14304000 3 3 2 3 3 3 3 3 3 3 3 4580100000 2649900000 1930200000 20922 2646 19219 108455;108456;108457;108458;108459;108460;108461 131421;131422;131423;131424;131425;131426 131424 6 VNLQMVYDSPLCR Unmodified 1593.7643 0.76433311 3231 Q9Y285;Q9Y285-2 FARSA Phenylalanine--tRNA ligase alpha subunit yes no 0 0 0 0 By MS/MS 8 0 1 1 67.323 67.444 2 2.5358E-05 21225 20211116_3436_TMUAki_TMT10x_P_F8 91.961 74.525 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20923 3231 19220 108462 131427 131427 1 VNLQNNPGAMEHFHMK 2 Oxidation (M) 1897.8563 0.85633601 1157 P51572-2;P51572 BCAP31 B-cell receptor-associated protein 31 yes no 0 0 2 0 By MS/MS 5 0 1 1 33.078 33.023 4 0.0060612 7937 20211116_3433_TMUAki_TMT10x_P_F5 55.975 44.713 2263700 3110200 0 3557700 5615000 4744900 2789000 2443800 2965000 2001200 2756700 2107100 2903800 151720 3615600 5307500 4708900 2982200 2587600 3001200 1972700 2665700 2 2 0 2 2 2 2 2 2 2 2 2263700 3110200 0 3557700 5615000 4744900 2789000 2443800 2965000 2001200 2756700 2107100 2903800 151720 3615600 5307500 4708900 2982200 2587600 3001200 1972700 2665700 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 226270000 226270000 0 20924 1157 19221 108463 131428;131429 131429 1541;1542 2 VNLQNNPGAMEHFHMK Unmodified 1865.8665 0.86650677 1157 P51572-2;P51572 BCAP31 B-cell receptor-associated protein 31 yes no 0 0 0 0 By MS/MS 7 0 1 1 44.088 44.593 4 7.6329E-08 13200 20211116_3435_TMUAki_TMT10x_P_F7 116.96 105.52 1963500 3480400 87017 4036300 4255400 4435900 2686700 1890200 2324300 1834600 2792500 1828900 3249700 275990 4084400 4046100 4437200 2796100 2048600 2397100 1794100 2679400 1 1 1 1 1 1 1 1 1 1 1 1963500 3480400 87017 4036300 4255400 4435900 2686700 1890200 2324300 1834600 2792500 1828900 3249700 275990 4084400 4046100 4437200 2796100 2048600 2397100 1794100 2679400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 390480000 390480000 0 20925 1157 19221 108464 131430 131430 1 VNMPPAVDPAEFFVLMER Unmodified 2061.0064 0.0063542914 2731 Q9BYN8 MRPS26 28S ribosomal protein S26, mitochondrial yes yes 0 0 0 0 By MS/MS 7 0 1 1 81.752 81.782 3 0.00013404 29001 20211116_3446_TMUAki_TMT10x_S_F7 72.359 59.159 715220 1263000 0 1402800 977560 793590 1093200 643090 547490 740280 935570 665810 1179100 46181 1412100 939150 842650 1086000 664350 594630 719000 890500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 715220 1263000 0 1402800 977560 793590 1093200 643090 547490 740280 935570 665810 1179100 46181 1412100 939150 842650 1086000 664350 594630 719000 890500 1 1 0 1 1 1 1 1 1 1 1 155070000 0 155070000 20926 2731 19222 108465 131431 131431 1 VNNASLIGLGYTQTLRPGVK Unmodified 2100.1691 0.1691376 3228 Q9Y277;Q9Y277-2 VDAC3 Voltage-dependent anion-selective channel protein 3 yes no 0 0 0 1 By MS/MS By MS/MS 4.33 0.667 1 4 4 5 4 61.01 61.035 3;4 2.4678E-71 18884 20211116_3431_TMUAki_TMT10x_P_F4 281.36 254.21 88574000 151030000 461920 153360000 103050000 138670000 102480000 107870000 95543000 104640000 113620000 82469000 140940000 7268100 156070000 98778000 141490000 103760000 111140000 98144000 102330000 109040000 15 15 9 15 15 15 15 15 15 15 15 52282000 87762000 192150 89199000 63439000 104230000 66293000 64012000 56738000 62343000 65148000 48680000 81897000 4419300 91121000 60896000 104350000 66799000 67063000 58438000 60956000 62586000 9 9 5 9 9 9 9 9 9 9 9 36292000 63269000 269770 64162000 39613000 34448000 36183000 43862000 38805000 42294000 48471000 33790000 59040000 2848700 64949000 37883000 37138000 36962000 44074000 39706000 41371000 46459000 6 6 4 6 6 6 6 6 6 6 6 14309000000 7252500000 7056000000 20927 3228 19223 108466;108467;108468;108469;108470;108471;108472;108473;108474 131432;131433;131434;131435;131436;131437;131438;131439;131440;131441;131442;131443;131444;131445;131446 131436 15 VNNPDNHAHYTEADDDDFEPHAIIR Unmodified 2904.2699 0.26992687 3300 Q9Y4K4 MAP4K5 Mitogen-activated protein kinase kinase kinase kinase 5 yes yes 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 39.43 39.329 5 8.4356E-17 12837 20211116_3441_TMUAki_TMT10x_S_F3 126.32 125.65 506080 815720 5382.7 995480 384790 358810 422080 655230 677730 569630 731790 471240 761820 43561 993340 370100 411460 434100 648670 680200 559850 704260 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 506080 815720 5382.7 995480 384790 358810 422080 655230 677730 569630 731790 471240 761820 43561 993340 370100 411460 434100 648670 680200 559850 704260 2 2 1 2 2 2 2 2 2 2 2 135840000 0 135840000 20928 3300 19224 108475;108476 131447;131448 131448 2 VNNSSLIGLGYTQTLKPGIK Unmodified 2102.1736 0.17355427 760 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 4 0.816 4 4 4 6 6 64.623 64.521 3;4 2.5604E-41 20771 20211116_3442_TMUAki_TMT10x_S_F4 201.27 184.77 318580000 545060000 2654300 547160000 320620000 453170000 351980000 354990000 370810000 380660000 392460000 296630000 508600000 26463000 556640000 308220000 465250000 355970000 366650000 377180000 370710000 377920000 29 29 20 29 29 29 29 29 29 29 29 154400000 248680000 1606800 253740000 173270000 280810000 186340000 167470000 173880000 175650000 182070000 143770000 232060000 13516000 258900000 166500000 281850000 187950000 176240000 177730000 171210000 175380000 13 13 9 13 13 13 13 13 13 13 13 164180000 296380000 1047500 293420000 147350000 172370000 165640000 187520000 196930000 205010000 210390000 152860000 276540000 12947000 297730000 141720000 183400000 168030000 190420000 199450000 199500000 202540000 16 16 11 16 16 16 16 16 16 16 16 39325000000 21344000000 17981000000 20929 760 19225 108477;108478;108479;108480;108481;108482;108483;108484;108485;108486;108487;108488 131449;131450;131451;131452;131453;131454;131455;131456;131457;131458;131459;131460;131461;131462;131463;131464;131465;131466;131467;131468;131469;131470;131471;131472;131473;131474;131475;131476;131477 131469 29 VNNSSLIGVGYTQTLRPGVK Unmodified 2102.1484 0.14840216 1034 P45880;P45880-2;P45880-1 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 3.41 0.984 1 3 6 10 2 8 14 52.324 52.256 2;3;4 1.4018E-116 16413 20211116_3431_TMUAki_TMT10x_P_F4 370.14 336.27 195120000 338680000 1405100 355280000 240060000 266220000 197480000 273330000 268610000 257450000 265190000 181680000 316090000 15915000 359940000 229090000 276860000 204740000 277070000 270030000 252090000 255930000 32 32 19 32 32 32 32 32 32 32 32 75977000 125130000 385930 130220000 115340000 159260000 99818000 99761000 97549000 93707000 91476000 70737000 116780000 5537100 132920000 110160000 159120000 101990000 104250000 99123000 91768000 88432000 12 12 6 12 12 12 12 12 12 12 12 119150000 213560000 1019100 225060000 124720000 106960000 97663000 173570000 171060000 163740000 173710000 110940000 199310000 10377000 227020000 118930000 117750000 102750000 172820000 170910000 160320000 167490000 20 20 13 20 20 20 20 20 20 20 20 57672000000 27174000000 30498000000 20930 1034 19226 108489;108490;108491;108492;108493;108494;108495;108496;108497;108498;108499;108500;108501;108502;108503;108504;108505;108506;108507;108508;108509;108510 131478;131479;131480;131481;131482;131483;131484;131485;131486;131487;131488;131489;131490;131491;131492;131493;131494;131495;131496;131497;131498;131499;131500;131501;131502;131503;131504;131505;131506;131507;131508;131509;131510;131511;131512;131513 131488 36 VNNSTMLGASGDYADFQYLK Oxidation (M) 2208.9997 0.99974859 836 P28070 PSMB4 Proteasome subunit beta type-4 yes yes 0 0 1 0 By MS/MS 6 0 1 1 67.853 67.786 3 1.3756E-06 21155 20211116_3445_TMUAki_TMT10x_S_F6 83.063 72.276 1616300 2873100 12402 2786600 2064000 1935900 2065100 1918100 2037800 2119900 2241500 1505100 2680600 151830 2836200 1979900 2024300 2093800 1957100 2081500 2062100 2156000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1616300 2873100 12402 2786600 2064000 1935900 2065100 1918100 2037800 2119900 2241500 1505100 2680600 151830 2836200 1979900 2024300 2093800 1957100 2081500 2062100 2156000 1 1 1 1 1 1 1 1 1 1 1 625110000 0 625110000 20931 836 19227 108511 131514 131514 1010 1 VNPALAELNLR Unmodified 1208.6877 0.68772099 651 P13489 RNH1 Ribonuclease inhibitor yes yes 0 0 0 0 By MS/MS By MS/MS 6 0.707 1 2 1 2 2 58.239 58.445 2 3.8063E-06 17324 20211116_3445_TMUAki_TMT10x_S_F6 121.36 71.321 23416000 38951000 420480 44093000 30337000 34110000 25250000 28921000 27207000 28414000 30961000 21805000 36365000 2422900 44469000 28985000 35248000 25939000 29652000 27726000 27772000 29751000 3 3 2 3 3 3 3 3 3 3 3 10227000 16501000 118010 18410000 15770000 21324000 13558000 11844000 10862000 12103000 12185000 9523400 15404000 1035500 18690000 15072000 21331000 13785000 12528000 11215000 11810000 11713000 1 1 1 1 1 1 1 1 1 1 1 13189000 22450000 302470 25682000 14567000 12786000 11692000 17077000 16345000 16311000 18776000 12282000 20960000 1387400 25779000 13913000 13917000 12154000 17124000 16511000 15961000 18037000 2 2 1 2 2 2 2 2 2 2 2 1440900000 448370000 992520000 20932 651 19228 108512;108513;108514;108515 131515;131516;131517;131518 131517 4 VNPCIGGVILFHETLYQK Unmodified 2087.0874 0.087381804 482 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 By matching By MS/MS 2 0 2 1 1 73.38 73.243 3 1.0459E-12 23737 20211116_3440_TMUAki_TMT10x_S_F2 137.73 118.69 5269400 9428900 139680 8987800 4905800 6833400 6160200 4030400 3620100 5090500 6170300 4907300 8796500 561950 9168000 4743900 7031300 6104400 4271000 3884500 4927900 5873300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5269400 9428900 139680 8987800 4905800 6833400 6160200 4030400 3620100 5090500 6170300 4907300 8796500 561950 9168000 4743900 7031300 6104400 4271000 3884500 4927900 5873300 1 1 1 1 1 1 1 1 1 1 1 2386500000 1545200000 841300000 20933 482 19229 108516;108517 131519 131519 1 VNPDLQVEVKPSIR Unmodified 1592.8886 0.88860564 2513 Q96KR1 ZFR Zinc finger RNA-binding protein yes yes 0 0 0 1 By MS/MS 6 0 1 1 49.517 49.617 3 0.00047646 13292 20211116_3434_TMUAki_TMT10x_P_F6 68.576 39.249 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20934 2513 19230 108518 131520 131520 1 VNPDTGYINYDQLEENAR Unmodified 2109.9603 0.96032661 914 P34896;P34896-2;P34896-4;P34896-3 SHMT1 Serine hydroxymethyltransferase, cytosolic yes no 0 0 0 0 By MS/MS By matching 3.33 0.943 1 2 2 1 58.706 58.634 3 5.4896E-07 19104 20211116_3429_TMUAki_TMT10x_P_F2 100.97 94.844 3876900 6471600 0 5627900 5138600 8676600 5428400 5130200 4971900 5045900 5636200 3609400 6035500 293540 5846600 4931500 8571400 5477000 5392500 5101600 4931600 5416500 2 2 0 2 2 2 2 2 2 2 2 3876900 6471600 0 5627900 5138600 8676600 5428400 5130200 4971900 5045900 5636200 3609400 6035500 293540 5846600 4931500 8571400 5477000 5392500 5101600 4931600 5416500 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 953010000 657710000 295310000 20935 914 19231 108519;108520;108521 131521;131522 131521 2 VNPFRPGDSEPPPAPGAQR Unmodified 1987.9864 0.98642221 1837 Q15942 ZYX Zyxin yes yes 0 0 0 1 By MS/MS By MS/MS 5.83 0.687 2 3 1 3 3 39.66 39.815 3 9.3868E-32 9171 20211116_3445_TMUAki_TMT10x_S_F6 193.19 175.09 4034200 7115900 47764 7886900 7636600 7618200 4755600 6308200 6509900 5174400 6382600 3756400 6642800 394900 7987500 7250500 7748000 5028800 6445900 6541400 5100300 6161000 11 11 3 11 11 11 11 11 11 11 11 2423200 4135700 17294 4591500 6158800 6474300 3656600 3709600 3856200 3080000 3797700 2256200 3860800 250290 4680100 5842200 6417300 3846100 3892400 3912200 3034000 3665300 5 5 2 5 5 5 5 5 5 5 5 1611100 2980200 30470 3295400 1477800 1143900 1099000 2598600 2653700 2094500 2585000 1500200 2782100 144620 3307400 1408300 1330700 1182700 2553600 2629200 2066300 2495800 6 6 1 6 6 6 6 6 6 6 6 621510000 523500000 98019000 20936 1837 19232 108522;108523;108524;108525;108526;108527 131523;131524;131525;131526;131527;131528;131529;131530;131531;131532;131533;131534 131530 12 VNPILGPQMFQPILPYVFK Oxidation (M) 2216.2068 0.20676866 3130 Q9UI26;Q9UI26-2 IPO11 Importin-11 yes no 0 0 1 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 80.942 80.937 3 2.1053E-08 26489 20211116_3445_TMUAki_TMT10x_S_F6 105.39 93.95 5793900 9566500 30130 8355100 6180200 9420000 7622300 6599700 7034900 7321800 7690200 5394900 8922100 505920 8625100 5963400 9467400 7638000 6874100 7205700 7121100 7398200 3 3 1 3 3 3 3 3 3 3 3 2078800 3132100 0 2574300 2017400 4043600 2084900 2267300 2570700 2508100 2534500 1935600 2920500 169510 2687600 1935900 3988800 2126300 2402100 2592700 2439600 2446100 1 1 0 1 1 1 1 1 1 1 1 3715100 6434400 30130 5780800 4162900 5376500 5537400 4332400 4464100 4813700 5155700 3459300 6001600 336410 5937500 4027500 5478700 5511800 4472000 4613000 4681500 4952100 2 2 1 2 2 2 2 2 2 2 2 1328700000 401890000 926810000 20937 3130 19233 108528;108529;108530 131535;131536;131537;131538 131537 3150 4 VNPILGPQMFQPILPYVFK Unmodified 2200.2119 0.21185404 3130 Q9UI26;Q9UI26-2 IPO11 Importin-11 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 82.345 82.366 3 6.8759E-09 29220 20211116_3446_TMUAki_TMT10x_S_F7 116.35 105.08 3890700 6387000 140160 6908500 4070400 4609600 4759900 2241900 2000900 2564400 4070300 3623700 5961700 455710 6976600 3928700 4784500 4706700 2408500 2229800 2491200 3862400 3 3 3 3 3 3 3 3 3 3 3 2023900 3261300 119460 3576400 1943400 3299900 2562900 1442600 1445700 1580500 2362100 1885400 3044300 278000 3622100 1886200 3337100 2532700 1564600 1552100 1537900 2250300 2 2 2 2 2 2 2 2 2 2 2 1866800 3125700 20702 3332100 2127000 1309700 2197000 799250 555270 983920 1708200 1738300 2917400 177710 3354500 2042500 1447500 2174000 843910 677650 953340 1612100 1 1 1 1 1 1 1 1 1 1 1 452240000 260630000 191610000 20938 3130 19233 108531;108532 131539;131540;131541 131541 3 VNPIQGLASK Unmodified 1025.5869 0.58694431 650 P13073 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 2 1 52.753 52.753 2 8.3693E-05 14731 20211116_3447_TMUAki_TMT10x_S_F8 126.29 98.672 13480000 21245000 115750 22362000 23603000 23312000 14262000 20062000 19893000 17089000 19476000 12551000 19828000 1332000 22749000 22402000 23617000 15130000 20473000 19976000 16812000 18801000 4 4 2 4 4 4 4 4 4 4 4 7933100 11405000 36566 12507000 17295000 16731000 8473500 10012000 10116000 8598400 10294000 7386500 10646000 788010 12745000 16362000 16633000 9107100 10476000 10226000 8455900 9924400 2 2 1 2 2 2 2 2 2 2 2 5546400 9840000 79188 9855200 6307700 6581100 5788900 10050000 9776900 8490100 9182200 5164800 9181900 544020 10004000 6039900 6984300 6022500 9996600 9750700 8356200 8876100 2 2 1 2 2 2 2 2 2 2 2 862770000 602190000 260580000 20939 650 19234 108533;108534;108535 131542;131543;131544;131545 131544 4 VNPLGGAVALGHPLGCTGAR Unmodified 1916.005 0.0050491585 569 P09110;P09110-2 ACAA1 3-ketoacyl-CoA thiolase, peroxisomal yes no 0 0 0 0 By MS/MS 3 0 1 1 53.912 53.531 3 1.2278E-07 18580 20211116_3441_TMUAki_TMT10x_S_F3 96.016 81.663 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20940 569 19235 108536 131546 131546 1 VNPSRLPVVIGGLLDVDCSEDVIK Unmodified 2593.3785 0.37853803 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 78.595 78.644 3 3.9649E-11 27291 20211116_3435_TMUAki_TMT10x_P_F7 103.63 89.617 8535100 14146000 80479 13992000 8172200 11460000 9379400 7025400 6683200 7724300 10638000 7947500 13199000 767980 14247000 7870400 11731000 9367300 7387700 7057400 7515200 10140000 2 2 1 2 2 2 2 2 2 2 2 4703700 7297100 80479 7311100 3773100 7448200 4418200 3844800 3612900 4049300 5778600 4380200 6809000 451940 7459600 3638900 7498300 4422900 4097100 3787600 3946400 5507300 1 1 1 1 1 1 1 1 1 1 1 3831400 6849300 0 6680500 4399100 4011800 4961200 3180600 3070300 3674900 4859900 3567300 6390500 316040 6787200 4231500 4232900 4944500 3290600 3269800 3568800 4632800 1 1 0 1 1 1 1 1 1 1 1 2037000000 710440000 1326600000 20941 1471 19236 108537;108538 131547;131548 131547 2 VNPTVFFDIAVDGEPLGR Acetyl (Protein N-term) 1987.0051 0.005091963 1385 P62937 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes yes 1 0 0 0 By MS/MS By MS/MS 2.43 1.18 2 2 1 2 3 4 84.997 84.993 2 1.2093E-70 31211 20211116_3441_TMUAki_TMT10x_S_F3 212.9 180.65 2509700 4700700 22905 4189600 3273800 4046800 3278100 2489500 2472900 2760900 3288600 2336900 4384400 178560 4308000 3140000 4096500 3300000 2617900 2580000 2685200 3147100 8 8 4 8 8 8 8 8 8 8 8 1349500 2586400 2114.3 2247800 1573500 2702800 1747900 1380600 1373100 1501900 1675900 1256500 2412200 57285 2323800 1512900 2695700 1752300 1474000 1424000 1461900 1607300 3 3 1 3 3 3 3 3 3 3 3 1160200 2114300 20791 1941800 1700300 1344000 1530200 1108900 1099900 1258900 1612700 1080400 1972200 121280 1984200 1627200 1400800 1547700 1143900 1155900 1223400 1539800 5 5 3 5 5 5 5 5 5 5 5 503640000 348220000 155420000 20942 1385 19237 108539;108540;108541;108542;108543;108544;108545 131549;131550;131551;131552;131553;131554;131555;131556;131557 131554 9 VNPTVFFDIAVDGEPLGR Unmodified 1944.9945 0.99452728 1385 P62937 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 1.65 1 4 3 5 9 4 4 14 16 81.404 81.398 2;3 4.0026E-90 27311 20211116_3442_TMUAki_TMT10x_S_F4 324.84 310.28 78074000 124450000 462720 115990000 88560000 122760000 99413000 80540000 82454000 87594000 100080000 72692000 116100000 6140500 119020000 85164000 123700000 99746000 84230000 85251000 85258000 95996000 29 29 17 29 29 29 29 29 29 29 29 43224000 65492000 262400 63277000 38945000 79387000 50007000 45972000 45946000 49622000 55576000 40244000 61102000 3291100 64950000 37605000 79129000 50020000 48537000 47262000 48313000 53314000 12 12 6 12 12 12 12 12 12 12 12 34850000 58960000 200320 52710000 49615000 43377000 49406000 34568000 36508000 37971000 44502000 32447000 54993000 2849400 54074000 47559000 44567000 49726000 35693000 37989000 36945000 42682000 17 17 11 17 17 17 17 17 17 17 17 50610000000 24933000000 25677000000 20943 1385 19237 108546;108547;108548;108549;108550;108551;108552;108553;108554;108555;108556;108557;108558;108559;108560;108561;108562;108563;108564;108565;108566;108567;108568;108569;108570;108571;108572;108573;108574;108575 131558;131559;131560;131561;131562;131563;131564;131565;131566;131567;131568;131569;131570;131571;131572;131573;131574;131575;131576;131577;131578;131579;131580;131581;131582;131583;131584;131585;131586;131587;131588;131589;131590;131591;131592 131580 35 VNQAIWLLCTGAR Unmodified 1500.7871 0.78711746 1055 P46782 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.816 4 4 4 6 6 73.194 73.139 2;3 3.4072E-25 24296 20211116_3442_TMUAki_TMT10x_S_F4 225.93 192.71 56416000 91915000 436800 91550000 61746000 70287000 62313000 36934000 31020000 40196000 59106000 52528000 85765000 4652000 93104000 59213000 72166000 62208000 39333000 33923000 39123000 56148000 15 15 7 15 15 15 15 15 15 15 15 30990000 49083000 249250 48434000 34281000 49597000 38192000 19749000 16968000 21796000 31110000 28855000 45797000 2658200 49474000 32971000 49783000 37878000 21647000 18693000 21202000 29573000 8 8 5 8 8 8 8 8 8 8 8 25426000 42832000 187550 43116000 27465000 20691000 24121000 17185000 14052000 18400000 27996000 23673000 39968000 1993800 43630000 26242000 22383000 24330000 17686000 15231000 17920000 26575000 7 7 2 7 7 7 7 7 7 7 7 11868000000 5734300000 6133800000 20944 1055 19238 108576;108577;108578;108579;108580;108581;108582;108583;108584;108585;108586;108587 131593;131594;131595;131596;131597;131598;131599;131600;131601;131602;131603;131604;131605;131606;131607;131608;131609 131605 17 VNQIGSVTEAIQACK Unmodified 1616.8192 0.81920545 568 P09104;P09104-2 ENO2 Gamma-enolase yes no 0 0 0 0 By MS/MS By MS/MS 7.53 0.618 1 5 9 4 11 59.821 60.044 2;3 3.5906E-72 19529 20211116_3435_TMUAki_TMT10x_P_F7 326.05 285.06 38758000 66476000 280480 69104000 57891000 68051000 45275000 51351000 46284000 46412000 52699000 36089000 62039000 3597100 70296000 55199000 69016000 46615000 52905000 47269000 45532000 50638000 23 23 12 23 23 23 23 23 23 23 23 24320000 40276000 136100 41679000 41484000 56425000 33623000 30844000 27919000 28079000 31334000 22645000 37587000 2288400 42641000 39582000 55997000 34339000 32568000 28773000 27537000 30121000 5 5 2 5 5 5 5 5 5 5 5 14438000 26200000 144380 27425000 16406000 11627000 11653000 20508000 18365000 18333000 21365000 13444000 24452000 1308700 27656000 15618000 13018000 12276000 20338000 18496000 17995000 20517000 18 18 10 18 18 18 18 18 18 18 18 7003500000 5604300000 1399200000 20945 568 19239 108588;108589;108590;108591;108592;108593;108594;108595;108596;108597;108598;108599;108600;108601;108602 131610;131611;131612;131613;131614;131615;131616;131617;131618;131619;131620;131621;131622;131623;131624;131625;131626;131627;131628;131629;131630;131631;131632;131633;131634 131613 25 VNQIGSVTESLQACK Unmodified 1632.8141 0.81412007 520 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 0 By MS/MS By MS/MS 6.35 1.09 1 4 8 6 4 12 11 56.334 56.581 2;3 1.5346E-135 16410 20211116_3447_TMUAki_TMT10x_S_F8 412.13 0 214360000 328820000 1567400 407570000 339350000 371960000 221420000 305020000 259780000 254350000 281530000 199590000 307120000 19388000 409690000 322360000 379620000 231950000 311980000 263370000 250500000 270910000 26 26 13 26 25 26 26 26 26 26 26 128080000 189280000 1052700 232250000 275340000 312160000 166580000 177170000 157710000 147850000 169170000 119250000 176780000 12807000 235100000 261230000 310040000 174380000 186070000 161240000 145600000 162830000 14 14 7 14 13 14 14 14 14 14 14 86283000 139540000 514640 175320000 64016000 59800000 54835000 127850000 102070000 106500000 112370000 80336000 130340000 6581300 174600000 61134000 69575000 57564000 125910000 102140000 104900000 108080000 12 12 6 12 12 12 12 12 12 12 12 94693000000 55406000000 39287000000 20946 520 19240 108603;108604;108605;108606;108607;108608;108609;108610;108611;108612;108613;108614;108615;108616;108617;108618;108619;108620;108621;108622;108623;108624;108625 131635;131636;131637;131638;131639;131640;131641;131642;131643;131644;131645;131646;131647;131648;131649;131650;131651;131652;131653;131654;131655;131656;131657;131658;131659;131660;131661;131662;131663 131663 29 VNQPASFAVQLNGAR Unmodified 1570.8216 0.82158871 1703 Q14315;Q14315-2 FLNC Filamin-C yes no 0 0 0 0 By MS/MS 1 0 1 1 52.143 51.862 2 8.0863E-20 16843 20211116_3439_TMUAki_TMT10x_S_F1 150.29 108.41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20947 1703 19241 108626 131664 131664 1 VNQPASFAVSLNGAK Unmodified 1501.7889 0.7888916 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 57.184 57.01 3 1.6853E-14 18959 20211116_3439_TMUAki_TMT10x_S_F1 151.22 132.49 12788000 22126000 156320 22637000 17259000 18439000 14131000 17905000 18931000 17227000 18452000 11907000 20648000 1215300 22994000 16476000 19032000 14646000 18211000 19032000 16852000 17815000 4 4 2 4 4 4 4 4 4 4 4 3738100 6705200 60946 7036200 7327300 9520800 5475900 4685100 5711900 4635100 5227900 3481000 6257900 416980 7191800 6982900 9437200 5658600 5006000 5783400 4529000 5058200 1 1 1 1 1 1 1 1 1 1 1 9049500 15421000 95376 15601000 9931200 8918400 8654900 13220000 13220000 12592000 13224000 8426200 14390000 798360 15803000 9492800 9594300 8987100 13205000 13249000 12324000 12757000 3 3 1 3 3 3 3 3 3 3 3 1765100000 923380000 841710000 20948 755 19242 108627;108628;108629 131665;131666;131667;131668 131666 4 VNQWTTNVVEQTLSQLTK Unmodified 2088.0851 0.085133198 1400 P63172 DYNLT1 Dynein light chain Tctex-type 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 80.899 80.863 3 8.7855E-18 29564 20211116_3441_TMUAki_TMT10x_S_F3 154.49 139.01 6762200 10177000 75848 10349000 6590000 7977400 8151800 3480200 3102600 4278400 7193300 6296800 9496800 621080 10510000 6362100 8172100 8030800 3789300 3522400 4145600 6812500 3 3 2 3 3 3 3 3 3 3 3 3777800 5318100 31208 5448500 3306600 5540600 4382200 2224400 2098700 2685100 3788400 3517700 4962800 327860 5550500 3198900 5564200 4318100 2442800 2295000 2603400 3602200 2 2 1 2 2 2 2 2 2 2 2 2984400 4858900 44639 4900900 3283400 2436800 3769700 1255800 1003800 1593300 3404900 2779100 4534000 293220 4959900 3163200 2607900 3712700 1346500 1227500 1542200 3210300 1 1 1 1 1 1 1 1 1 1 1 1396000000 994170000 401780000 20949 1400 19243 108630;108631;108632 131669;131670;131671 131671 3 VNSDSGIPGLAASVLVVSHGAYMR Oxidation (M) 2415.2216 0.22164345 2901 Q9NQ88 TIGAR Fructose-2,6-bisphosphatase TIGAR yes yes 0 0 1 0 By MS/MS 2 0 1 1 72.484 72.371 3 0.012497 23377 20211116_3440_TMUAki_TMT10x_S_F2 42.472 32.275 2414200 3767300 23050 4265600 2999400 2501300 2532400 2299500 2272600 2252000 2827000 2248000 3517200 229830 4290000 2865600 2652500 2585100 2346800 2343000 2201400 2710000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2414200 3767300 23050 4265600 2999400 2501300 2532400 2299500 2272600 2252000 2827000 2248000 3517200 229830 4290000 2865600 2652500 2585100 2346800 2343000 2201400 2710000 1 1 1 1 1 1 1 1 1 1 1 427460000 0 427460000 20950 2901 19244 108633 131672 131672 3015 1 VNTFSALLLEPYKPPSAQ Unmodified 1974.0462 0.046228496 233 O43681 ASNA1 ATPase ASNA1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.6 0.49 2 3 2 3 79.015 78.962 3 1.1003E-09 28794 20211116_3441_TMUAki_TMT10x_S_F3 121.26 110 10695000 17514000 82368 16950000 12958000 14257000 12302000 9089700 9748500 10662000 13227000 9957700 16340000 874940 17292000 12406000 14574000 12434000 9549600 10153000 10348000 12652000 3 3 1 3 3 3 3 3 3 3 3 4109600 6530400 82368 6557900 3586800 6865000 4352800 3816000 4124400 4254600 5009500 3827100 6093700 410160 6692800 3463400 6906200 4368100 4046800 4237300 4137200 4805100 1 1 1 1 1 1 1 1 1 1 1 6585300 10984000 0 10392000 9371600 7392200 7949000 5273700 5624100 6407100 8217200 6130600 10247000 464780 10599000 8942300 7668200 8065400 5502800 5915300 6210800 7846600 2 2 0 2 2 2 2 2 2 2 2 5230300000 2341500000 2888800000 20951 233 19245 108634;108635;108636;108637;108638 131673;131674;131675;131676 131675 4 VNTHGIFTISTASMVEK Oxidation (M) 1849.9244 0.9243988 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 1 0 By MS/MS By MS/MS 8 0 2 1 1 53.122 53.133 3 0.00017335 14864 20211116_3447_TMUAki_TMT10x_S_F8 75.682 59.74 5440000 9569600 96913 10938000 7706800 10179000 5282300 7931600 7952500 7444900 8443900 5065900 8934600 573080 11051000 7334600 10366000 5567500 8163100 7990900 7291100 8130400 2 2 2 2 2 2 2 2 2 2 2 3137000 4891000 39220 6132900 6157300 7760600 3342500 4254800 4262600 3998300 4431200 2921100 4568500 338930 6193200 5835500 7726800 3566100 4495200 4302200 3915500 4269400 1 1 1 1 1 1 1 1 1 1 1 2303000 4678600 57693 4805300 1549500 2418600 1939800 3676700 3689900 3446600 4012700 2144700 4366100 234150 4857500 1499000 2639400 2001400 3667900 3688800 3375600 3860900 1 1 1 1 1 1 1 1 1 1 1 1268500000 863970000 404510000 20952 2345 19246 108639;108640 131677;131678 131678 2694 2 VNTLIRPDGEK Unmodified 1240.6776 0.67755023 1364 P62750 RPL23A 60S ribosomal protein L23a yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 39.55 39.644 3 4.5642E-05 9521 20211116_3444_TMUAki_TMT10x_S_F5 100.73 66.475 13340000 21938000 256950 23640000 23273000 18845000 15561000 11493000 14256000 11563000 17195000 12423000 20477000 1483700 23925000 22137000 19329000 16147000 12058000 14664000 11291000 16496000 7 7 6 7 7 7 7 7 7 7 7 8002600 13032000 164570 14085000 18374000 14546000 9518500 7103700 8582300 6960600 10339000 7452500 12164000 962110 14301000 17405000 14623000 10089000 7593900 8834300 6804000 9919400 3 3 3 3 3 3 3 3 3 3 3 5337300 8905700 92380 9555800 4899200 4299300 6042700 4389300 5673400 4602800 6855500 4970300 8312400 521590 9624000 4731900 4706100 6058100 4464500 5829800 4486600 6576600 4 4 3 4 4 4 4 4 4 4 4 992440000 718450000 273990000 20953 1364 19247 108641;108642;108643;108644;108645;108646 131679;131680;131681;131682;131683;131684;131685 131683 7 VNVAGLVLAGSADFK Unmodified 1459.8035 0.80347903 1360 P62495;P62495-2 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 0 0 0 0 By MS/MS 1 0 1 1 78.516 78.516 2 3.2718E-09 25685 20211116_3428_TMUAki_TMT10x_P_F1 125.53 76.887 8472400 13739000 34579 13768000 8205200 14272000 9934900 5956900 6891900 6808600 9763600 7888900 12820000 730900 14051000 7913100 14322000 9892800 6501800 7246300 6614600 9329700 1 1 1 1 1 1 1 1 1 1 1 8472400 13739000 34579 13768000 8205200 14272000 9934900 5956900 6891900 6808600 9763600 7888900 12820000 730900 14051000 7913100 14322000 9892800 6501800 7246300 6614600 9329700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 396110000 396110000 0 20954 1360 19248 108647 131686 131686 1 VNVDIINFGEEEVNTEK Unmodified 1947.9426 0.94255129 1232 P55036;P55036-2;A2A3N6 PSMD4;PIPSL 26S proteasome non-ATPase regulatory subunit 4;Putative PIP5K1A and PSMD4-like protein yes no 0 0 0 0 By MS/MS By MS/MS 2.38 1.41 3 2 1 1 1 4 4 76.52 76.455 3 8.3305E-16 26753 20211116_3439_TMUAki_TMT10x_S_F1 153.97 127.83 26319000 44169000 254900 51300000 18171000 31457000 19326000 20988000 13050000 20314000 29986000 24505000 41241000 1975100 51534000 17460000 31627000 19345000 21356000 14019000 19868000 28402000 6 6 2 6 3 4 5 5 5 5 6 12603000 20091000 108730 25613000 4909400 19963000 6526800 8433400 4691000 7564700 13512000 11733000 18767000 827430 25655000 4751800 19693000 6475600 8638600 5165600 7423900 12762000 3 3 1 3 1 2 2 2 3 2 3 13716000 24078000 146170 25687000 13262000 11493000 12800000 12555000 8358600 12750000 16473000 12772000 22474000 1147700 25879000 12708000 11934000 12870000 12717000 8853600 12444000 15640000 3 3 1 3 2 2 3 3 2 3 3 5713900000 4050800000 1663100000 20955 1232 19249 108648;108649;108650;108651;108652;108653;108654;108655 131687;131688;131689;131690;131691;131692;131693;131694;131695 131691 9 VNVGAGSHPNK Unmodified 1078.552 0.55195579 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS 5 0 1 1 29.07 29 3 0.012085 6330 20211116_3433_TMUAki_TMT10x_P_F5 58.511 37.886 161870 280610 4128.8 256760 317890 334570 200120 177730 195680 172080 221510 150750 261750 19453 264780 302100 332510 209010 188450 200180 168300 212880 1 1 1 1 1 1 1 1 1 1 1 161870 280610 4128.8 256760 317890 334570 200120 177730 195680 172080 221510 150750 261750 19453 264780 302100 332510 209010 188450 200180 168300 212880 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7597200 7597200 0 20956 755 19250 108656 131696 131696 1 VNVPVIGGHAGK Unmodified 1146.6509 0.65094155 989 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 41.246 41.294 3 0.0018147 10602 20211116_3436_TMUAki_TMT10x_P_F8 69.864 35.786 45127000 70925000 1972400 70052000 62134000 74178000 47147000 49914000 50565000 50458000 57049000 42033000 66177000 5817800 71588000 59320000 74768000 48713000 51990000 51522000 49257000 54832000 6 6 6 6 6 6 6 6 6 6 6 30602000 46430000 1174300 46331000 46731000 60507000 33268000 33004000 33670000 33321000 37818000 28502000 43324000 3857500 47484000 44541000 60148000 34461000 34954000 34383000 32530000 36353000 4 4 4 4 4 4 4 4 4 4 4 14525000 24495000 798060 23721000 15403000 13671000 13879000 16910000 16896000 17136000 19231000 13530000 22853000 1960300 24104000 14779000 14620000 14251000 17036000 17139000 16727000 18479000 2 2 2 2 2 2 2 2 2 2 2 2573300000 1632300000 941050000 20957 989 19251 108657;108658;108659;108660 131697;131698;131699;131700;131701 131700 5 VNVTGIYR Unmodified 920.50797 0.50796571 911 P33991 MCM4 DNA replication licensing factor MCM4 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 41.871 42.001 2 0.0024257 10304 20211116_3447_TMUAki_TMT10x_S_F8 109.71 73.013 2903900 4706000 2424.8 4994500 5375900 4991800 3423200 3713900 3982100 3224900 4406400 2703800 4392200 273010 5074800 5105400 5056700 3591700 3825900 4041700 3169700 4237600 2 2 1 2 2 2 2 2 2 2 2 1686900 2719600 0 2917400 4375600 4038000 2299500 2168800 2372300 1835200 2538100 1570600 2538500 172890 2979000 4143100 4002500 2443200 2289400 2416100 1806100 2443300 1 1 0 1 1 1 1 1 1 1 1 1217000 1986300 2424.8 2077100 1000200 953820 1123700 1545100 1609800 1389700 1868300 1133200 1853800 100120 2095800 962320 1054300 1148400 1536400 1625600 1363600 1794300 1 1 1 1 1 1 1 1 1 1 1 153150000 90850000 62298000 20958 911 19252 108661;108662 131702;131703 131703 2 VNVTVDYIRPASPATETVPAFSER Unmodified 2618.334 0.33403068 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 5.83 0.687 2 3 1 2 4 62.038 62.159 3;4 1.3419E-60 18794 20211116_3445_TMUAki_TMT10x_S_F6 235.23 221.91 52373000 98383000 1007500 71395000 82198000 113010000 67818000 124470000 106350000 94928000 89759000 48772000 91701000 4688300 75363000 78514000 112820000 70736000 125090000 105920000 93928000 87100000 11 11 9 11 11 11 11 11 11 11 11 19307000 36980000 377880 27665000 25635000 57403000 30091000 45026000 39163000 35585000 32937000 17979000 34471000 2033400 29325000 24714000 56366000 30570000 46122000 39224000 35143000 31966000 5 5 4 5 5 5 5 5 5 5 5 33066000 61403000 629610 43731000 56563000 55612000 37728000 79440000 67188000 59342000 56822000 30792000 57230000 2654900 46038000 53800000 56456000 40166000 78965000 66696000 58785000 55135000 6 6 5 6 6 6 6 6 6 6 6 12666000000 4006100000 8660300000 20959 2048 19253 108663;108664;108665;108666;108667;108668 131704;131705;131706;131707;131708;131709;131710;131711;131712;131713;131714 131709 11 VNYGAYINDFK Unmodified 1302.6245 0.62445203 692 P16278;P16278-2;P16278-3 GLB1 Beta-galactosidase yes no 0 0 0 0 By MS/MS 7 0 1 1 64.855 65.469 2 8.5712E-05 21637 20211116_3435_TMUAki_TMT10x_P_F7 98.249 59.892 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20960 692 19254 108669 131715 131715 1 VPADTEVVCAPPTAYIDFAR Unmodified 2191.062 0.061954915 1271 P60174;P60174-1 TPI1 Triosephosphate isomerase yes no 0 0 0 0 By MS/MS By MS/MS 5.37 1.45 2 4 7 12 9 15 18 31 53.313 53.36 2;3 2.0185E-64 24810 20211116_3433_TMUAki_TMT10x_P_F5 273.07 227.81 402280000 661160000 2451300 593800000 461610000 598800000 479690000 423730000 392260000 449780000 495030000 374540000 616680000 28984000 610610000 442930000 605770000 482910000 440440000 406530000 438200000 474360000 65 65 31 65 65 65 65 65 65 65 65 201810000 321740000 1553000 294560000 191810000 365930000 218720000 210410000 198050000 221890000 240280000 187910000 300110000 13328000 303490000 184580000 364890000 219810000 222120000 203880000 216240000 230480000 33 33 12 33 33 33 33 33 33 33 33 200460000 339420000 898330 299240000 269800000 232860000 260970000 213330000 194220000 227890000 254750000 186630000 316570000 15656000 307120000 258350000 240880000 263110000 218320000 202650000 221960000 243880000 32 32 19 32 32 32 32 32 32 32 32 106600000000 55333000000 51262000000 20961 1271 19255 108670;108671;108672;108673;108674;108675;108676;108677;108678;108679;108680;108681;108682;108683;108684;108685;108686;108687;108688;108689;108690;108691;108692;108693;108694;108695;108696;108697;108698;108699;108700;108701;108702;108703;108704;108705;108706;108707;108708;108709;108710;108711;108712;108713;108714;108715;108716;108717;108718 131716;131717;131718;131719;131720;131721;131722;131723;131724;131725;131726;131727;131728;131729;131730;131731;131732;131733;131734;131735;131736;131737;131738;131739;131740;131741;131742;131743;131744;131745;131746;131747;131748;131749;131750;131751;131752;131753;131754;131755;131756;131757;131758;131759;131760;131761;131762;131763;131764;131765;131766;131767;131768;131769;131770;131771;131772;131773;131774;131775;131776;131777;131778;131779;131780;131781;131782;131783;131784;131785;131786;131787;131788;131789 131731 74 VPAFLDLFMQSLFKPGAR Oxidation (M) 2052.0867 0.086653523 2155 Q8IXH7;Q8IXH7-4 NELFCD Negative elongation factor C/D yes no 0 0 1 1 By MS/MS 8 0 1 1 80.581 80.571 3 0.0056655 26027 20211116_3447_TMUAki_TMT10x_S_F8 58.83 39.452 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20962 2155 19256 108719 131790 131790 2615 1 VPAINVNDSVTK Unmodified 1255.6772 0.67721588 786 P23526;P23526-2 AHCY Adenosylhomocysteinase yes no 0 0 0 0 By MS/MS By MS/MS 5.6 0.49 2 3 3 2 51.472 51.583 2;3 1.4853E-16 14078 20211116_3434_TMUAki_TMT10x_P_F6 208.84 178.68 8104400 12481000 222450 14793000 13732000 14098000 8812500 10053000 10397000 9153600 11036000 7547700 11654000 956060 14917000 13056000 14314000 9245200 10399000 10530000 8977000 10626000 3 3 2 3 3 3 3 3 3 3 3 5063900 7673400 140040 9131400 11046000 11284000 6119100 6274300 6718300 5704700 6731700 4716000 7165600 632140 9244800 10476000 11250000 6483000 6615000 6809000 5594900 6493400 2 2 1 2 2 2 2 2 2 2 2 3040500 4807100 82412 5661500 2685900 2813200 2693400 3779100 3678500 3449000 4304000 2831700 4488700 323920 5672700 2580600 3063300 2762200 3783700 3721300 3382000 4132600 1 1 1 1 1 1 1 1 1 1 1 841150000 547640000 293510000 20963 786 19257 108720;108721;108722;108723;108724 131791;131792;131793;131794;131795 131792 5 VPAPSIEDICHVLSTVCKK Unmodified 2152.102 0.10204559 991 P40938;P40938-2 RFC3 Replication factor C subunit 3 yes no 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 76.305 76.217 4 5.5115E-41 24894 20211116_3440_TMUAki_TMT10x_S_F2 206.98 194.31 31194000 51352000 789590 51523000 36146000 41420000 34546000 29819000 20759000 30535000 36786000 29051000 47918000 3351500 52399000 34663000 42559000 34699000 30924000 22291000 29792000 34990000 7 7 6 7 7 7 7 7 7 7 7 10661000 16870000 134290 16173000 10071000 19229000 11829000 9373200 6562600 9597900 11508000 9927500 15739000 1000800 16594000 9708900 19179000 11744000 10034000 7082200 9364600 10948000 2 2 2 2 2 2 2 2 2 2 2 20533000 34482000 655300 35350000 26075000 22192000 22717000 20445000 14197000 20937000 25278000 19123000 32179000 2350800 35805000 24955000 23380000 22955000 20890000 15209000 20428000 24042000 5 5 4 5 5 5 5 5 5 5 5 3558900000 1556200000 2002700000 20964 991 19258 108725;108726;108727 131796;131797;131798;131799;131800;131801;131802 131800 7 VPEEDLKR Unmodified 984.52401 0.52400971 2609 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 34.231 34.085 3 0.009144 10599 20211116_3441_TMUAki_TMT10x_S_F3 76.221 38.663 2654700 4273500 10542 4085400 4429400 4330000 3441000 2525800 2598900 2579000 3455600 2471700 3986900 233620 4184700 4221500 4355500 3516000 2660700 2711200 2516600 3307000 3 3 2 3 3 3 3 3 3 3 3 1873600 2960500 2728.2 2918000 3559200 3522400 2416400 1786700 1832600 1841100 2443800 1744300 2762300 160320 2988800 3382800 3512100 2492800 1905800 1911600 1795800 2338500 2 2 1 2 2 2 2 2 2 2 2 781160 1313000 7814 1167400 870220 807510 1024600 739050 766320 737940 1011800 727390 1224600 73293 1195900 838770 843300 1023200 754840 799620 720750 968470 1 1 1 1 1 1 1 1 1 1 1 177260000 152470000 24784000 20965 2609 19259 108728;108729;108730 131803;131804 131804 2 VPEGPIPPSTPK Unmodified 1217.6656 0.66558856 692 P16278;P16278-2;P16278-3 GLB1 Beta-galactosidase yes no 0 0 0 0 By MS/MS 1 0 1 1 61.55 61.264 3 0.085595 20713 20211116_3439_TMUAki_TMT10x_S_F1 30.828 0 1676300 2715000 17134 2875100 2124900 1947000 1894400 3120200 2484200 2620500 2326500 1560900 2533900 161230 2907900 2032700 2067100 1951900 3098200 2495900 2579900 2249200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1676300 2715000 17134 2875100 2124900 1947000 1894400 3120200 2484200 2620500 2326500 1560900 2533900 161230 2907900 2032700 2067100 1951900 3098200 2495900 2579900 2249200 1 1 1 1 1 1 1 1 1 1 1 552370000 0 552370000 20966 692 19260 108731 131805 131805 1 VPEIEVTVEGPNNNNPQTSAVR Unmodified 2363.1717 0.17171637 1428 P78347;P78347-2;P78347-4;P78347-3 GTF2I General transcription factor II-I yes no 0 0 0 0 By MS/MS By MS/MS 2.83 1.07 1 1 2 2 4 2 56.78 56.628 3 3.5356E-35 17586 20211116_3442_TMUAki_TMT10x_S_F4 182.15 166.99 7581900 13235000 78141 12325000 9727100 15625000 9473400 10912000 11240000 10374000 10637000 7059500 12346000 564900 12687000 9320400 15609000 9677200 11316000 11336000 10154000 10280000 7 7 3 7 7 7 7 7 7 7 7 5664900 8952700 78141 8476800 7187400 13202000 7357000 7836400 7826500 7375300 7196300 5275100 8352100 453480 8752000 6899600 13037000 7468200 8224500 7919200 7222100 6961500 5 5 3 5 5 5 5 5 5 5 5 1916900 4282100 0 3847900 2539700 2423400 2116500 3075500 3413300 2998600 3440800 1784400 3994000 111420 3934900 2420900 2571300 2209100 3091800 3416600 2931700 3318300 2 2 0 2 2 2 2 2 2 2 2 3672600000 2115900000 1556700000 20967 1428 19261 108732;108733;108734;108735;108736;108737 131806;131807;131808;131809;131810;131811;131812;131813 131813 8 VPFCPMVGSEVYSTEIK Oxidation (M) 1957.9165 0.91653623 3225 Q9Y265;Q9Y265-2 RUVBL1 RuvB-like 1 yes no 0 0 1 0 By MS/MS By MS/MS 6.17 0.687 1 3 2 4 2 68.701 68.855 3 6.3746E-08 23582 20211116_3446_TMUAki_TMT10x_S_F7 112.96 100.8 25708000 43024000 426480 41073000 27712000 45970000 29612000 29792000 27568000 28604000 34856000 23940000 40139000 2556900 42112000 26645000 46165000 29874000 31072000 28394000 27985000 33398000 7 7 7 7 7 7 7 7 7 7 7 20120000 32517000 350560 32100000 21217000 38415000 22362000 21575000 20329000 20867000 26507000 18737000 30341000 2010200 32872000 20394000 38367000 22560000 22764000 20990000 20409000 25380000 5 5 5 5 5 5 5 5 5 5 5 5587900 10507000 75918 8972500 6495000 7554700 7249400 8217800 7239000 7737600 8348100 5203400 9798100 546730 9240600 6251300 7798600 7313700 8307500 7404200 7576800 8018700 2 2 2 2 2 2 2 2 2 2 2 3955300000 2463700000 1491700000 20968 3225 19262 108738;108739;108740;108741;108742;108743 131814;131815;131816;131817;131818;131819;131820;131821 131820 3217 8 VPFCPMVGSEVYSTEIK Unmodified 1941.9216 0.92162161 3225 Q9Y265;Q9Y265-2 RUVBL1 RuvB-like 1 yes no 0 0 0 0 By MS/MS 7 0 1 1 75.095 75.202 3 1.122E-15 26254 20211116_3446_TMUAki_TMT10x_S_F7 140.84 128.48 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20969 3225 19262 108744 131822 131822 1 VPFLDHR Unmodified 882.47119 0.47118627 554 P08243;P08243-2;P08243-3 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 41.627 41.897 3 0.0008977 10239 20211116_3434_TMUAki_TMT10x_P_F6 126.2 36.531 336330 569390 6425.2 604480 602020 626530 562340 519520 637220 533460 511760 313200 531440 37095 614520 576600 634500 574800 534030 640530 520430 497560 3 3 2 3 3 3 3 3 3 3 3 119960 178630 3025.6 186860 343730 377630 229400 194020 213580 190000 206400 111720 166710 15900 192900 326890 368810 238180 206420 217720 185730 199330 1 1 1 1 1 1 1 1 1 1 1 216370 390760 3399.6 417620 258290 248890 332940 325490 423630 343450 305370 201480 364720 21195 421620 249710 265680 336620 327610 422810 334690 298240 2 2 1 2 2 2 2 2 2 2 2 203920000 79043000 124870000 20970 554 19263 108745;108746;108747;108748 131823;131824;131825;131826 131823 4 VPFLVAETPR Unmodified 1127.6339 0.63389451 1597 Q13131;Q13131-2 PRKAA1 5'-AMP-activated protein kinase catalytic subunit alpha-1 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 3 2 1 61.443 62.046 2 0.00035719 20746 20211116_3446_TMUAki_TMT10x_S_F7 112.11 90.644 4559700 7909200 107490 8137000 6055800 5162800 4902600 6128700 5658800 5773300 6331700 4246400 7381000 499160 8240500 5784100 5464700 5056700 6171800 5747600 5653100 6087100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4559700 7909200 107490 8137000 6055800 5162800 4902600 6128700 5658800 5773300 6331700 4246400 7381000 499160 8240500 5784100 5464700 5056700 6171800 5747600 5653100 6087100 1 1 1 1 1 1 1 1 1 1 1 812350000 565360000 246990000 20971 1597 19264 108749;108750;108751 131827;131828 131828 2 VPFLVLECPNLK Unmodified 1427.7847 0.78465784 2931 Q9NRP0;Q9NRP0-2 OSTC Oligosaccharyltransferase complex subunit OSTC yes no 0 0 0 0 By MS/MS By MS/MS 2.71 2.25 4 6 2 2 6 8 61.116 61.068 2;3 1.9371E-09 25875 20211116_3440_TMUAki_TMT10x_S_F2 157.99 132.06 45055000 74043000 113790 66150000 47685000 71287000 52963000 41520000 38974000 43385000 53876000 41947000 69060000 3309600 68119000 45826000 71637000 53014000 43773000 40791000 42295000 51511000 9 9 3 9 9 9 9 9 9 9 9 33421000 54664000 84344 48318000 31453000 56651000 36526000 30379000 28620000 31779000 38969000 31115000 50983000 2339100 49865000 30260000 56608000 36540000 32255000 29829000 30979000 37272000 6 6 2 6 6 6 6 6 6 6 6 11634000 19379000 29447 17833000 16232000 14636000 16438000 11141000 10354000 11606000 14907000 10832000 18077000 970530 18254000 15566000 15029000 16475000 11518000 10961000 11315000 14239000 3 3 1 3 3 3 3 3 3 3 3 6626000000 4397500000 2228500000 20972 2931 19265 108752;108753;108754;108755;108756;108757;108758;108759;108760;108761;108762;108763;108764;108765 131829;131830;131831;131832;131833;131834;131835;131836;131837;131838;131839;131840 131837 12 VPGLYVIDSIVR Unmodified 1329.7656 0.76563696 3208;404 O95104;O95104-2;O95104-3;Q9UPN6;Q9UPN6-2 SCAF4;SCAF8 Splicing factor, arginine/serine-rich 15;Protein SCAF8 no no 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 78.81 78.788 2 9.8265E-06 27756 20211116_3439_TMUAki_TMT10x_S_F1 110.53 79.815 7372400 12728000 135660 11167000 8548700 11051000 9016100 6971300 7005100 8096200 9331200 6865400 11871000 754120 11501000 8216900 11173000 9058700 7327500 7297100 7860900 8929400 2 2 2 2 2 2 2 2 2 2 2 4545400 7569000 131720 6758000 4524800 7747900 5279200 4301600 4362900 4713800 5460200 4233200 7059600 499320 6966400 4365500 7754500 5287100 4559800 4517500 4586700 5233200 1 1 1 1 1 1 1 1 1 1 1 2826900 5159400 3935.8 4408800 4023900 3302900 3736900 2669700 2642300 3382500 3871000 2632200 4811500 254810 4534200 3851300 3418700 3771600 2767700 2779500 3274200 3696200 1 1 1 1 1 1 1 1 1 1 1 1580100000 522900000 1057200000 20973 404;3208 19266 108766;108767;108768 131841;131842 131842 2 VPITAVIAAK Unmodified 981.62227 0.62226719 848 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 62.546 62.257 2 8.5688E-09 19345 20211116_3440_TMUAki_TMT10x_S_F2 141.48 118.05 10803000 16412000 19050 15438000 14951000 21008000 12906000 12728000 12594000 12839000 14955000 10059000 15311000 947840 15901000 14283000 20872000 13188000 13362000 12910000 12535000 14353000 2 2 1 2 2 2 2 2 2 2 2 10803000 16412000 19050 15438000 14951000 21008000 12906000 12728000 12594000 12839000 14955000 10059000 15311000 947840 15901000 14283000 20872000 13188000 13362000 12910000 12535000 14353000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 381810000 381810000 0 20974 848 19267 108769;108770 131843;131844;131845 131845 3 VPITYLELLN Unmodified 1173.6645 0.66452593 3262 Q9Y371;Q9Y371-2;Q9Y371-3 SH3GLB1 Endophilin-B1 yes no 0 0 0 0 By MS/MS By MS/MS 6.38 1.32 1 1 2 2 2 3 5 81.992 81.994 2 0.00016157 29060 20211116_3446_TMUAki_TMT10x_S_F7 91.065 55.965 1897600 3443400 101950 3165000 2257500 3359100 2434300 1949100 1930900 2041700 2391900 1767600 3212000 257380 3251400 2175200 3378300 2444400 2055700 2002800 1990300 2293100 3 3 3 3 3 3 3 3 3 3 3 1431400 2676300 87555 2383200 1683000 2797000 1743500 1513500 1426400 1489400 1733400 1333400 2496200 203790 2458200 1620600 2795000 1755500 1602900 1475900 1455700 1662700 2 2 2 2 2 2 2 2 2 2 2 466200 767090 14394 781780 574420 562110 690830 435610 504480 552290 658410 434190 715830 53582 793220 554580 583350 688890 452770 526840 534590 630380 1 1 1 1 1 1 1 1 1 1 1 256040000 139490000 116560000 20975 3262 19268 108771;108772;108773;108774;108775;108776;108777;108778 131846;131847;131848;131849;131850 131850 5 VPLEVQEADEAKLQQTEAELR Unmodified 2395.2231 0.22308324 820 P26640 VARS Valine--tRNA ligase yes yes 0 0 0 1 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 67.597 67.421 3 4.6498E-55 22734 20211116_3429_TMUAki_TMT10x_P_F2 219.04 204.58 10363000 20694000 45620 12053000 15627000 32830000 17887000 20884000 19029000 19156000 18518000 9648900 19278000 909040 13217000 15039000 31895000 18060000 21785000 19291000 18780000 17879000 5 5 2 5 5 5 5 5 5 5 5 8575900 17392000 45620 9807100 12551000 29898000 15692000 17024000 15802000 15848000 15425000 7985000 16201000 758210 10841000 12113000 28930000 15757000 17923000 16058000 15526000 14892000 4 4 2 4 4 4 4 4 4 4 4 1787200 3301900 0 2246300 3076500 2931900 2194300 3860400 3226900 3308100 3092400 1663900 3077000 150830 2376400 2926700 2965400 2303900 3861600 3232900 3253600 2987300 1 1 0 1 1 1 1 1 1 1 1 2365800000 1672700000 693090000 20976 820 19269 108779;108780;108781 131851;131852;131853;131854;131855 131853 5 VPLFSPNFSEK Unmodified 1263.6499 0.6499385 2622 Q9BQ52;Q9BQ52-4;Q9BQ52-3 ELAC2 Zinc phosphodiesterase ELAC protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 3 2 1 68.806 68.783 2;3 4.2104E-07 21765 20211116_3436_TMUAki_TMT10x_P_F8 111.61 88.535 11874000 19496000 100690 20036000 14670000 16684000 13136000 14703000 13864000 14666000 15879000 11056000 18194000 1062800 20352000 14030000 17159000 13427000 15048000 14144000 14325000 15255000 3 3 2 3 3 3 3 3 3 3 3 3330400 5288100 57671 5945800 3884700 6494900 3817400 3463800 3166700 3626900 3425400 3101300 4936800 337620 6027400 3726700 6514600 3855600 3679600 3259200 3535500 3296400 1 1 1 1 1 1 1 1 1 1 1 8543600 14208000 43019 14091000 10786000 10189000 9318900 11239000 10698000 11039000 12453000 7954800 13257000 725230 14325000 10304000 10644000 9571900 11368000 10885000 10790000 11959000 2 2 1 2 2 2 2 2 2 2 2 697650000 360490000 337170000 20977 2622 19270 108782;108783;108784 131856;131857;131858;131859 131857 4 VPLSEFDFSWSK Unmodified 1440.6925 0.6925316 2976 Q9NVP1 DDX18 ATP-dependent RNA helicase DDX18 yes yes 0 0 0 0 By MS/MS 7 0 1 1 78.858 78.907 2 0.0026739 27792 20211116_3446_TMUAki_TMT10x_S_F7 72.652 55.267 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20978 2976 19271 108785 131860 131860 1 VPLVAEKPLKEPK Unmodified 1446.881 0.88100107 1001 P41250 GARS Glycine--tRNA ligase yes yes 0 0 0 2 By MS/MS By MS/MS 5.33 3.09 1 1 1 1 2 47.479 47.556 4 0.0022075 15100 20211116_3439_TMUAki_TMT10x_S_F1 73.887 58.362 16493000 26627000 454910 27948000 20826000 22407000 19914000 24089000 25254000 23625000 26449000 15360000 24851000 1852000 28335000 19974000 23207000 20413000 24393000 25500000 23092000 25478000 4 4 4 4 4 4 4 4 4 4 4 2634500 4253900 70270 4660300 6446600 7463000 3781000 3625600 3518500 3328200 3957400 2453500 3970900 337300 4767500 6118600 7343700 3966500 3871100 3606500 3262800 3803900 1 1 1 1 1 1 1 1 1 1 1 13859000 22373000 384640 23287000 14379000 14944000 16133000 20463000 21736000 20296000 22492000 12907000 20880000 1514700 23568000 13855000 15863000 16447000 20522000 21894000 19829000 21674000 3 3 3 3 3 3 3 3 3 3 3 771480000 357050000 414430000 20979 1001 19272 108786;108787;108788 131861;131862;131863 131861 3 VPLVAPEDLRDDIIENAPTTHTEEYSGEEK Unmodified 3366.6103 0.61032469 128 O14744;O14744-5;O14744-2;O14744-3 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed yes no 0 0 0 1 By MS/MS By MS/MS 2.46 1.28 4 3 3 2 1 7 6 68.414 68.238 4;5 5.9247E-36 21707 20211116_3440_TMUAki_TMT10x_S_F2 177.85 169.23 76442000 130100000 818530 131520000 88468000 120710000 88742000 76073000 70899000 84054000 91839000 71180000 121400000 6592300 133910000 84872000 122640000 89448000 79837000 73651000 81763000 87945000 18 18 13 18 18 18 18 18 18 18 18 37050000 64770000 238310 62820000 39219000 78150000 45225000 36235000 35217000 40925000 42821000 34497000 60430000 2672100 64454000 37760000 77727000 45250000 39097000 36535000 39777000 41072000 9 9 5 9 9 9 9 9 9 9 9 39392000 65329000 580220 68704000 49249000 42565000 43517000 39838000 35682000 43129000 49018000 36682000 60972000 3920300 69460000 47111000 44913000 44199000 40741000 37116000 41986000 46873000 9 9 8 9 9 9 9 9 9 9 9 15320000000 9238800000 6081300000 20980 128 19273 108789;108790;108791;108792;108793;108794;108795;108796;108797;108798;108799;108800;108801 131864;131865;131866;131867;131868;131869;131870;131871;131872;131873;131874;131875;131876;131877;131878;131879;131880;131881 131879 18 VPNACLFTINKEDHTLGNIIK Unmodified 2396.2522 0.2522153 1177 P52435 POLR2J DNA-directed RNA polymerase II subunit RPB11-a yes yes 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 66.503 66.235 4 5.1961E-07 22290 20211116_3429_TMUAki_TMT10x_P_F2 83.251 67.128 11660000 19070000 0 18084000 13472000 18078000 14212000 11138000 10582000 11992000 13865000 10856000 17790000 909570 18518000 12931000 18261000 14265000 11700000 11040000 11677000 13274000 3 3 0 3 3 3 3 3 3 3 3 6895200 11099000 0 10302000 8529400 13151000 8713000 6787500 6564700 7225600 8019400 6419700 10354000 551710 10608000 8180200 13078000 8761900 7235300 6824100 7038800 7691000 2 2 0 2 2 2 2 2 2 2 2 4764400 7970100 0 7782500 4942400 4927200 5498800 4350600 4017000 4766100 5846100 4435800 7436300 357860 7910000 4750400 5182600 5502700 4465000 4216300 4637700 5582900 1 1 0 1 1 1 1 1 1 1 1 1652800000 980690000 672130000 20981 1177 19274 108802;108803 131882;131883;131884 131883 3 VPPAINQFTQALDR Unmodified 1568.8311 0.83109076 1358 P62424 RPL7A 60S ribosomal protein L7a yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 2 4 3 3 72.051 71.988 2;3 2.4784E-14 23043 20211116_3436_TMUAki_TMT10x_P_F8 158.05 127.8 10220000 17113000 85368 16727000 10520000 14393000 11936000 8716800 8751800 9859400 11786000 9516400 15967000 922130 17057000 10128000 14679000 11935000 9183300 9150500 9582100 11276000 6 6 5 6 6 6 6 6 6 6 6 5492800 8887900 17201 8363600 5207500 9318000 6115000 4493800 4571600 4983200 5942200 5114400 8291400 458480 8583500 5016500 9325300 6107400 4827100 4767000 4846700 5689800 3 3 2 3 3 3 3 3 3 3 3 4727200 8225000 68167 8363700 5312700 5075100 5821100 4223000 4180200 4876200 5843800 4402000 7675400 463650 8473400 5111000 5353900 5827300 4356200 4383500 4735400 5585800 3 3 3 3 3 3 3 3 3 3 3 2434700000 1219500000 1215200000 20982 1358 19275 108804;108805;108806;108807;108808;108809 131885;131886;131887;131888;131889;131890;131891;131892 131888 8 VPPATAFEGHMLLSGLEPFR Oxidation (M) 2184.1038 0.10376015 2597 Q99707;Q99707-2 MTR Methionine synthase yes no 0 0 1 0 By MS/MS 8 0 1 1 73.408 73.25 3 0.0027923 23111 20211116_3447_TMUAki_TMT10x_S_F8 57.366 40.288 2506600 4401600 52586 4227100 3206100 2784400 3141900 2514600 2238900 2410100 3013200 2334300 4106600 266620 4303100 3075800 2919500 3162400 2567200 2344700 2358200 2882700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2506600 4401600 52586 4227100 3206100 2784400 3141900 2514600 2238900 2410100 3013200 2334300 4106600 266620 4303100 3075800 2919500 3162400 2567200 2344700 2358200 2882700 1 1 1 1 1 1 1 1 1 1 1 265890000 0 265890000 20983 2597 19276 108810 131893 131893 2834 1 VPPFPLPLEPCTQEFLWR Unmodified 2225.1343 0.134332 1564 Q12789;Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 yes no 0 0 0 0 By MS/MS 2 0 1 1 81.243 81.229 3 0.060532 26968 20211116_3440_TMUAki_TMT10x_S_F2 37.237 26.293 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20984 1564 19277 108811 131894 131894 1 VPPFVDLNVNSNEGK Unmodified 1627.8206 0.82058566 2976 Q9NVP1 DDX18 ATP-dependent RNA helicase DDX18 yes yes 0 0 0 0 By MS/MS 6 0 1 1 67.726 67.7 3 0.10567 20720 20211116_3434_TMUAki_TMT10x_P_F6 30.172 13.948 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20985 2976 19278 108812 131895 131895 1 VPPPPPIAR Unmodified 942.56509 0.56508666 545 P07910-2;P07910-4;P07910;P07910-3 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 0 0 0 0 By MS/MS By MS/MS 5.44 2.42 3 2 2 2 2 2 8 6 11 16 39.439 39.612 2;3 6.1465E-06 9780 20211116_3446_TMUAki_TMT10x_S_F7 170.31 120.19 48347000 74020000 1101800 78931000 75827000 76172000 54085000 57192000 61236000 58685000 64659000 45020000 69087000 4678800 80135000 72190000 77343000 56219000 59151000 62105000 57253000 62268000 46 46 22 46 46 46 46 46 46 46 46 26870000 38973000 878650 43898000 51579000 55478000 31870000 31762000 35461000 33156000 35504000 25023000 36385000 3113200 44609000 48996000 55270000 33469000 33532000 35920000 32324000 34248000 15 15 11 15 15 15 15 15 15 15 15 21477000 35047000 223150 35033000 24248000 20695000 22214000 25430000 25775000 25529000 29154000 19997000 32703000 1565600 35526000 23194000 22073000 22750000 25620000 26185000 24929000 28019000 31 31 11 31 31 31 31 31 31 31 31 23320000000 15171000000 8149100000 20986 545 19279 108813;108814;108815;108816;108817;108818;108819;108820;108821;108822;108823;108824;108825;108826;108827;108828;108829;108830;108831;108832;108833;108834;108835;108836;108837;108838;108839 131896;131897;131898;131899;131900;131901;131902;131903;131904;131905;131906;131907;131908;131909;131910;131911;131912;131913;131914;131915;131916;131917;131918;131919;131920;131921;131922;131923;131924;131925;131926;131927;131928;131929;131930;131931;131932;131933;131934;131935;131936;131937;131938;131939;131940;131941;131942;131943;131944;131945;131946;131947 131928 52 VPPVPDYVAHPER Unmodified 1474.7569 0.75686319 3328 Q9Y5U2;Q9Y5U2-2 TSSC4 Protein TSSC4 yes no 0 0 0 0 By MS/MS By matching 4.5 0.5 1 1 1 1 43.48 43.597 3 0.095162 11743 20211116_3431_TMUAki_TMT10x_P_F4 28.089 11.064 1970300 2916600 0 3743600 4717100 4110800 2353000 2567700 2669900 2106600 2719400 1834400 2724600 185500 3766200 4462500 4130500 2520200 2674700 2704000 2076400 2621800 1 1 0 1 1 1 1 1 1 1 1 1970300 2916600 0 3743600 4717100 4110800 2353000 2567700 2669900 2106600 2719400 1834400 2724600 185500 3766200 4462500 4130500 2520200 2674700 2704000 2076400 2621800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 227860000 154270000 73585000 20987 3328 19280 108840;108841 131948 131948 1 VPQIEVETHK Unmodified 1178.6295 0.62953741 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 41.674 41.748 3 6.595E-05 11059 20211116_3431_TMUAki_TMT10x_P_F4 88.338 61.208 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20988 1695 19281 108842 131949 131949 1 VPSENVLGEVGSGFK Unmodified 1517.7726 0.77257283 1115 P49748;P49748-2;P49748-3 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS 6 0 1 1 67.296 67.229 3 3.4675E-05 20916 20211116_3445_TMUAki_TMT10x_S_F6 85.28 64.44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20989 1115 19282 108843 131950 131950 1 VPSTEAEALASSLMGLFEK Oxidation (M) 1994.9871 0.98705864 1133 P50395 GDI2 Rab GDP dissociation inhibitor beta yes yes 0 0 1 0 By MS/MS By MS/MS 5.29 2.28 2 1 2 1 2 4 2 7 7 81.326 81.328 2;3 9.0082E-18 26911 20211116_3436_TMUAki_TMT10x_P_F8 149.52 132.03 56363000 94886000 620900 96762000 56494000 77847000 68708000 45366000 48091000 54007000 65174000 52482000 88546000 4960800 98298000 54495000 79743000 68417000 48023000 50432000 52390000 62342000 16 16 8 16 16 16 16 16 16 16 16 25600000 43909000 364240 43872000 21882000 43210000 26393000 21345000 23450000 26758000 30886000 23838000 40972000 2262500 44750000 21108000 43569000 26445000 22968000 24249000 25910000 29565000 7 7 4 7 7 7 7 7 7 7 7 30762000 50977000 256650 52890000 34612000 34637000 42315000 24020000 24641000 27249000 34287000 28644000 47574000 2698300 53548000 33388000 36173000 41972000 25055000 26184000 26480000 32777000 9 9 4 9 9 9 9 9 9 9 9 12377000000 5534600000 6842100000 20990 1133 19283 108844;108845;108846;108847;108848;108849;108850;108851;108852;108853;108854;108855;108856;108857 131951;131952;131953;131954;131955;131956;131957;131958;131959;131960;131961;131962;131963;131964;131965;131966 131956 1492 16 VPSTEAEALASSLMGLFEK Unmodified 1978.9921 0.99214402 1133 P50395 GDI2 Rab GDP dissociation inhibitor beta yes yes 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 83.219 83.239 3 1.0059E-17 29561 20211116_3446_TMUAki_TMT10x_S_F7 148.36 133.75 1238900 1899000 10707 2170600 1328700 1158100 1500000 965540 957990 953610 1382400 1153600 1773000 113950 2180100 1279000 1237900 1495800 991060 1013400 931840 1320400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1238900 1899000 10707 2170600 1328700 1158100 1500000 965540 957990 953610 1382400 1153600 1773000 113950 2180100 1279000 1237900 1495800 991060 1013400 931840 1320400 2 2 2 2 2 2 2 2 2 2 2 118330000 0 118330000 20991 1133 19283 108858;108859 131967;131968 131968 2 VPSTETEALASNLMGMFEK Unmodified 2053.97 0.97002836 884 P31150 GDI1 Rab GDP dissociation inhibitor alpha yes yes 0 0 0 0 By MS/MS 8 0 1 1 80.985 80.99 3 0.0049989 26814 20211116_3436_TMUAki_TMT10x_P_F8 54.253 38.832 1213400 1948800 21102 2561800 1171100 1541600 1517400 830970 736410 918760 1393700 1130000 1820800 119670 2554900 1132900 1617500 1496900 883370 806670 893690 1324100 1 1 1 1 1 1 1 1 1 1 1 1213400 1948800 21102 2561800 1171100 1541600 1517400 830970 736410 918760 1393700 1130000 1820800 119670 2554900 1132900 1617500 1496900 883370 806670 893690 1324100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 260110000 260110000 0 20992 884 19284 108860 131969 131969 1 VPTANVSVVDLTCR Unmodified 1529.7872 0.78717704 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS 6.24 1.45 2 4 4 5 13 46 4 35 43 38.055 38.142 2;3 6.4381E-43 17469 20211116_3436_TMUAki_TMT10x_P_F8 258.65 239.3 162030000 277430000 1369800 292540000 230040000 282700000 195440000 178890000 166850000 174680000 219940000 150860000 258930000 11365000 297220000 219620000 286270000 199170000 187000000 172880000 170780000 210520000 67 67 32 67 67 67 67 67 67 67 67 114830000 194190000 728380 205730000 189280000 239500000 152300000 127680000 118890000 123930000 158180000 106900000 181240000 8126500 209570000 180450000 239390000 155380000 135350000 123810000 121190000 151380000 38 38 18 38 38 38 38 38 38 38 38 47204000 83245000 641470 86811000 40764000 43202000 43147000 51211000 47961000 50753000 61752000 43956000 77690000 3238300 87657000 39177000 46881000 43790000 51650000 49071000 49587000 59143000 29 29 14 29 29 29 29 29 29 29 29 241700000000 130460000000 111230000000 20993 489 19285 108861;108862;108863;108864;108865;108866;108867;108868;108869;108870;108871;108872;108873;108874;108875;108876;108877;108878;108879;108880;108881;108882;108883;108884;108885;108886;108887;108888;108889;108890;108891;108892;108893;108894;108895;108896;108897;108898;108899;108900;108901;108902;108903;108904;108905;108906;108907;108908;108909;108910;108911;108912;108913;108914;108915;108916;108917;108918;108919;108920;108921;108922;108923;108924;108925;108926;108927;108928;108929;108930;108931;108932;108933;108934;108935;108936;108937;108938 131970;131971;131972;131973;131974;131975;131976;131977;131978;131979;131980;131981;131982;131983;131984;131985;131986;131987;131988;131989;131990;131991;131992;131993;131994;131995;131996;131997;131998;131999;132000;132001;132002;132003;132004;132005;132006;132007;132008;132009;132010;132011;132012;132013;132014;132015;132016;132017;132018;132019;132020;132021;132022;132023;132024;132025;132026;132027;132028;132029;132030;132031;132032;132033;132034;132035;132036;132037;132038;132039;132040;132041;132042;132043;132044;132045;132046;132047;132048;132049;132050;132051;132052;132053 132012 84 VPTANVSVVDLTCRLEK Unmodified 1900.0088 0.0087971324 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 1 By MS/MS By MS/MS 6.33 2.27 2 1 2 4 6 8 7 65.614 65.802 2;3;4 3.3458E-51 19769 20211116_3436_TMUAki_TMT10x_P_F8 271.08 235.56 396650000 552080000 981750 850970000 337300000 254370000 261440000 173200000 164090000 174610000 335730000 369280000 516270000 26299000 838100000 321140000 294110000 266120000 180240000 177290000 170470000 318560000 21 21 10 21 20 21 20 21 21 21 21 140870000 193680000 823560 283930000 117260000 158470000 101230000 69020000 65678000 73324000 120240000 131170000 181070000 11874000 281410000 112070000 167160000 102400000 74818000 70308000 71435000 114300000 11 11 6 11 10 11 10 11 11 11 11 255780000 358390000 158180 567040000 220040000 95901000 160210000 104180000 98415000 101280000 215500000 238110000 335200000 14425000 556690000 209070000 126940000 163720000 105420000 106980000 99037000 204260000 10 10 4 10 10 10 10 10 10 10 10 94820000000 49161000000 45659000000 20994 489 19286 108939;108940;108941;108942;108943;108944;108945;108946;108947;108948;108949;108950;108951;108952;108953 132054;132055;132056;132057;132058;132059;132060;132061;132062;132063;132064;132065;132066;132067;132068;132069;132070;132071;132072;132073;132074;132075 132064 22 VPTANVSVVDLTCRLEKPAK Unmodified 2196.1936 0.19363779 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 2 By MS/MS By MS/MS 3 2.45 3 4 2 2 7 4 60.847 60.664 3;4;5 4.2703E-64 18332 20211116_3428_TMUAki_TMT10x_P_F1 266.62 238.29 438560000 766950000 2379600 592070000 568150000 747080000 470710000 586440000 530490000 554190000 575810000 408330000 715000000 36327000 618680000 542230000 747900000 484410000 603390000 538680000 542580000 554060000 24 24 10 24 24 24 24 24 24 24 24 224110000 374000000 2084200 299140000 339160000 539700000 307320000 294790000 272870000 281710000 283270000 208670000 348700000 19937000 314060000 324390000 529470000 312330000 311690000 279480000 275670000 272940000 14 14 6 14 14 14 14 14 14 14 14 214450000 392960000 295400 292930000 228990000 207370000 163390000 291650000 257620000 272480000 292540000 199670000 366300000 16390000 304620000 217840000 218430000 172080000 291700000 259200000 266910000 281120000 10 10 4 10 10 10 10 10 10 10 10 58687000000 34648000000 24038000000 20995 489 19287 108954;108955;108956;108957;108958;108959;108960;108961;108962;108963;108964 132076;132077;132078;132079;132080;132081;132082;132083;132084;132085;132086;132087;132088;132089;132090;132091;132092;132093;132094;132095;132096;132097;132098;132099;132100 132077 25 VPTHVPVCVLGNYR Unmodified 1609.8399 0.83988131 1887 Q3YEC7;Q3YEC7-2;Q3YEC7-4;Q3YEC7-5;Q3YEC7-6;Q3YEC7-3 RABL6 Rab-like protein 6 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 50.487 50.222 3 0.001415 15704 20211116_3429_TMUAki_TMT10x_P_F2 65.295 51.891 1667500 2688200 0 2925500 2879200 4140300 2237200 2679400 2402000 2069500 2310700 1552500 2509200 142390 2985900 2743800 4110100 2308000 2779700 2433200 2046300 2231800 1 1 0 1 1 1 1 1 1 1 1 1667500 2688200 0 2925500 2879200 4140300 2237200 2679400 2402000 2069500 2310700 1552500 2509200 142390 2985900 2743800 4110100 2308000 2779700 2433200 2046300 2231800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 320650000 320650000 0 20996 1887 19288 108965;108966 132101;132102 132101 2 VPTISINKTDGCHAYLSK Unmodified 2003.0146 0.014610792 1482 Q01518;Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 yes no 0 0 0 1 By MS/MS 2 0 1 1 51.234 50.975 4 0.0072931 16021 20211116_3429_TMUAki_TMT10x_P_F2 56.708 40.024 6354000 10906000 116370 10991000 16202000 20824000 10572000 14110000 13628000 11741000 10901000 5917100 10177000 773170 11354000 15401000 20457000 11113000 14614000 13634000 11565000 10600000 2 2 2 2 2 2 2 2 2 2 2 6354000 10906000 116370 10991000 16202000 20824000 10572000 14110000 13628000 11741000 10901000 5917100 10177000 773170 11354000 15401000 20457000 11113000 14614000 13634000 11565000 10600000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 398590000 398590000 0 20997 1482 19289 108967 132103;132104 132104 2 VPTKRPTDYFAEMAK Oxidation (M) 1768.8818 0.8818057 2610 Q99848 EBNA1BP2 Probable rRNA-processing protein EBP2 yes yes 0 0 1 2 By MS/MS 8 0 1 1 44.587 44.557 4 0.016032 11395 20211116_3447_TMUAki_TMT10x_S_F8 50.608 32.908 936810 1651700 24157 1803500 829780 710050 638780 1786200 2007300 1487300 1589300 872440 1541800 98683 1812800 792300 814990 700290 1752800 1967300 1464900 1546100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 936810 1651700 24157 1803500 829780 710050 638780 1786200 2007300 1487300 1589300 872440 1541800 98683 1812800 792300 814990 700290 1752800 1967300 1464900 1546100 1 1 1 1 1 1 1 1 1 1 1 135230000 0 135230000 20998 2610 19290 108968 132105 132105 2858 1 VPTLAVPAISLPDDVRR Unmodified 1818.0363 0.036332512 811 P26358;P26358-2 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 68.287 68.193 3 8.1121E-12 23440 20211116_3439_TMUAki_TMT10x_S_F1 139.71 121.79 12005000 19280000 45129 18551000 13565000 14877000 12547000 9821900 9171700 9866600 13719000 11178000 17987000 970900 18922000 12979000 15269000 12676000 10243000 9639700 9634400 13094000 5 5 2 5 5 5 5 5 5 5 5 4796300 7662200 0 7490200 5362500 8124800 5240200 3984300 3748600 3939900 5541100 4465400 7149000 354850 7662900 5135500 8144800 5275600 4258600 3942400 3849700 5289800 2 2 0 2 2 2 2 2 2 2 2 7209000 11618000 45129 11061000 8202900 6752600 7307200 5837600 5423100 5926800 8178300 6712300 10838000 616050 11259000 7843100 7124300 7400500 5984100 5697300 5784700 7804000 3 3 2 3 3 3 3 3 3 3 3 611470000 317330000 294130000 20999 811 19291 108969;108970 132106;132107;132108;132109;132110 132108 5 VPTTEKPTVTVNFR Unmodified 1587.8621 0.86205654 1511 Q04637;Q04637-3;Q04637-8;Q04637-5;Q04637-4;Q04637-9;Q04637-6;Q04637-7 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 1 By MS/MS By MS/MS 4 3.29 2 1 2 3 2 48.278 48.153 3 3.8274E-14 13528 20211116_3440_TMUAki_TMT10x_S_F2 137.39 116.15 19296000 28820000 125480 36185000 32097000 29233000 18230000 17126000 12694000 16219000 22009000 17966000 26920000 1802100 36290000 30429000 29938000 19045000 17997000 13487000 15877000 20943000 5 5 3 5 5 5 5 5 5 5 5 13934000 19896000 8063.1 25070000 28267000 25080000 13667000 12061000 9103900 11578000 15456000 12973000 18585000 1269600 25210000 26731000 25256000 14485000 12905000 9686800 11328000 14713000 3 3 1 3 3 3 3 3 3 3 3 5362000 8924200 117420 11115000 3830100 4153400 4563100 5065200 3590300 4640100 6553100 4993400 8335400 532520 11080000 3698000 4681100 4560100 5091200 3800200 4549300 6229800 2 2 2 2 2 2 2 2 2 2 2 1547800000 641060000 906760000 21000 1511 19292 108971;108972;108973;108974;108975 132111;132112;132113;132114;132115;132116;132117;132118 132118 8 VPTTEKPTVTVNFRK Unmodified 1715.957 0.95701956 1511 Q04637;Q04637-3;Q04637-8;Q04637-5;Q04637-4;Q04637-9;Q04637-6;Q04637-7 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 0 0 0 2 By MS/MS 3 0 1 1 45.801 45.46 4 1.7721E-06 15265 20211116_3441_TMUAki_TMT10x_S_F3 111.34 94.6 2861800 3905900 27752 5083200 2273200 1776200 2133100 2242100 1622500 2187100 2863300 2664900 3649000 254890 5053100 2177800 2023900 2155200 2254400 1717000 2138300 2723700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2861800 3905900 27752 5083200 2273200 1776200 2133100 2242100 1622500 2187100 2863300 2664900 3649000 254890 5053100 2177800 2023900 2155200 2254400 1717000 2138300 2723700 1 1 1 1 1 1 1 1 1 1 1 154310000 0 154310000 21001 1511 19293 108976 132119 132119 1 VPVDEFDGKVTYGQK Unmodified 1680.8359 0.83590137 2334 Q92499;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 55.381 55.469 3 0.024952 16064 20211116_3445_TMUAki_TMT10x_S_F6 44.567 31.163 10404000 17035000 40152 17364000 12042000 14224000 9898200 9228500 10178000 9085300 11998000 9687100 15896000 834500 17644000 11489000 14572000 10161000 9630700 10406000 8879100 11518000 2 2 1 2 2 2 2 2 2 2 2 4651300 7532000 40152 7736600 7751500 9406000 4863600 4115000 4791800 3895800 5151800 4331200 7028900 466470 7903100 7362300 9360300 5082100 4444300 4890800 3813800 4958600 1 1 1 1 1 1 1 1 1 1 1 5753000 9502700 0 9627900 4290600 4818300 5034700 5113500 5385900 5189500 6846600 5355900 8867500 368030 9741300 4127000 5211800 5078800 5186400 5515700 5065200 6559500 1 1 0 1 1 1 1 1 1 1 1 822380000 399720000 422660000 21002 2334 19294 108977;108978 132120;132121 132121 2 VPVHDVTDASK Unmodified 1166.5932 0.5931519 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS 5 0 1 1 33.9 34.077 3 0.0030323 7171 20211116_3444_TMUAki_TMT10x_S_F5 66.267 48.402 253850 412200 2565.4 462030 267070 277270 261040 337190 341590 291210 385310 236380 384810 23622 465060 256080 295210 267600 338430 345540 286310 370340 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 253850 412200 2565.4 462030 267070 277270 261040 337190 341590 291210 385310 236380 384810 23622 465060 256080 295210 267600 338430 345540 286310 370340 1 1 1 1 1 1 1 1 1 1 1 11896000 0 11896000 21003 755 19295 108979 132122 132122 1 VPVLQLDSGNYLFSTSAICR Unmodified 2239.1307 0.13070318 1254 P56192;P56192-2 MARS Methionine--tRNA ligase, cytoplasmic yes no 0 0 0 0 By MS/MS 3 0 1 1 79.081 79.01 3 0.0076063 28827 20211116_3441_TMUAki_TMT10x_S_F3 48.146 30.658 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21004 1254 19296 108980 132123 132123 1 VPVNLLR Unmodified 809.51232 0.51232281 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 51.649 51.507 2 0.0047662 16228 20211116_3429_TMUAki_TMT10x_P_F2 111.81 54.361 7025100 10958000 0 11303000 10395000 11170000 7487800 7743300 7836600 7484900 9278500 6540400 10226000 550690 11504000 9889200 11310000 7758000 8038000 8008300 7320800 8906000 3 3 0 3 3 3 3 3 3 3 3 3954500 6348800 0 6098700 7489100 8512200 4766700 4697900 4944900 4379200 5253500 3681700 5923100 340150 6275400 7110000 8437100 4983000 4959500 5033800 4290100 5058300 2 2 0 2 2 2 2 2 2 2 2 3070600 4609200 0 5204100 2906100 2657400 2721100 3045300 2891700 3105700 4025000 2858700 4303100 210540 5229000 2779200 2872900 2775100 3078500 2974500 3030700 3847600 1 1 0 1 1 1 1 1 1 1 1 547900000 355130000 192770000 21005 1695 19297 108981;108982;108983;108984 132124;132125;132126;132127 132125 4 VPVPDERFDFLCQYHKPASK Unmodified 2432.1947 0.19470042 2947 Q9NTK5;Q9NTK5-3 OLA1 Obg-like ATPase 1 yes no 0 0 0 2 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 57.703 57.657 5 9.1711E-07 17148 20211116_3428_TMUAki_TMT10x_P_F1 94.837 87.254 29339000 51335000 292340 52917000 37989000 52663000 34132000 40327000 34510000 37933000 36243000 27316000 47907000 2462400 53869000 36323000 53388000 34835000 41553000 35153000 37146000 34908000 5 5 2 5 5 5 5 5 5 5 5 15157000 26735000 292340 26304000 24130000 38534000 21433000 21488000 18212000 20825000 18080000 14113000 24945000 1368900 27048000 23068000 38118000 21782000 22688000 18664000 20367000 17446000 3 3 2 3 3 3 3 3 3 3 3 14181000 24600000 0 26613000 13859000 14129000 12699000 18839000 16299000 17108000 18162000 13204000 22962000 1093500 26821000 13255000 15270000 13053000 18865000 16490000 16780000 17463000 2 2 0 2 2 2 2 2 2 2 2 4473300000 3638400000 834950000 21006 2947 19298 108985;108986;108987 132128;132129;132130;132131;132132 132128 5 VPVPEDKYTAQVDAEEKEDVK Unmodified 2388.1697 0.16965069 372 O75947 ATP5H ATP synthase subunit d, mitochondrial yes yes 0 0 0 2 By MS/MS By matching 4 0 2 1 1 51.948 52.07 4 4.6394E-05 15266 20211116_3431_TMUAki_TMT10x_P_F4 77.847 70.631 5136700 8624800 103860 9579900 10594000 10994000 7248000 5277500 5044600 4903500 6268900 4783500 8051500 599090 9726800 10080000 10985000 7458600 5643100 5271900 4804400 6009500 1 1 1 1 1 1 1 1 1 1 1 5136700 8624800 103860 9579900 10594000 10994000 7248000 5277500 5044600 4903500 6268900 4783500 8051500 599090 9726800 10080000 10985000 7458600 5643100 5271900 4804400 6009500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1557700000 913810000 643880000 21007 372 19299 108988;108989 132133 132133 1 VPVTYLELLS Unmodified 1132.638 0.63797683 2922 Q9NR46;Q9NR46-2 SH3GLB2 Endophilin-B2 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 81.919 81.929 2 0.0041317 26534 20211116_3434_TMUAki_TMT10x_P_F6 78.496 54.541 2951300 4730600 105910 4724400 4034000 5344500 4198600 4018100 4293800 4469700 4327100 2748600 4414100 350560 4829400 3878000 5376600 4253100 4165800 4365200 4346800 4173200 4 4 3 4 4 4 4 4 4 4 4 1689900 2588400 68996 2670600 2173000 3644500 2412400 2364400 2373000 2523400 2332800 1574000 2415600 211180 2733200 2093800 3624000 2433200 2473300 2414400 2457900 2251600 2 2 2 2 2 2 2 2 2 2 2 1261300 2142200 36915 2053700 1860900 1700000 1786200 1653700 1920800 1946300 1994300 1174600 1998600 139390 2096100 1784200 1752600 1819900 1692400 1950800 1888800 1921600 2 2 1 2 2 2 2 2 2 2 2 269360000 108450000 160910000 21008 2922 19300 108990;108991;108992;108993 132134;132135;132136;132137 132134 4 VPVVFVTNAGNILQHSK Unmodified 1822.0101 0.010117761 2719 Q9BXW7;Q9BXW7-2 CECR5 Cat eye syndrome critical region protein 5 yes no 0 0 0 0 By MS/MS 4 0.816 1 1 1 3 70.757 70.569 3 2.6869E-30 23245 20211116_3442_TMUAki_TMT10x_S_F4 170.11 153.97 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21009 2719 19301 108994;108995;108996 132138;132139;132140 132139 3 VPYPVFESNPEFLYVEGLPEGIPFR Unmodified 2894.4531 0.45308318 1428 P78347;P78347-2;P78347-4;P78347-3 GTF2I General transcription factor II-I yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 81.75 81.758 3 2.5622E-17 27424 20211116_3431_TMUAki_TMT10x_P_F4 134.81 123.51 1237600 2095800 43989 2027600 1402000 1668600 1638400 1025100 1281100 1475400 1616900 1152700 1955400 106450 2067900 1352900 1707500 1638500 1088200 1330900 1422400 1549300 3 3 2 3 3 3 3 3 3 3 3 479740 798060 29167 670660 389040 770770 541150 375590 470760 462830 615950 446900 744200 65686 694680 378620 770160 538770 404430 487150 448430 589690 1 1 1 1 1 1 1 1 1 1 1 757860 1297800 14822 1356900 1012900 897780 1097300 649500 810370 1012600 1000900 705750 1211200 40768 1373200 974250 937340 1099700 683770 843730 973970 959640 2 2 1 2 2 2 2 2 2 2 2 897480000 587530000 309950000 21010 1428 19302 108997;108998 132141;132142;132143 132141 3 VQADVPPEILNNVGALHFR Unmodified 2088.1116 0.11162272 2006 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 3 2 1 71.119 71.438 3 2.5034E-09 24135 20211116_3435_TMUAki_TMT10x_P_F7 119.68 108.21 16120000 22825000 264330 26613000 17451000 23573000 18424000 18088000 15092000 15912000 22071000 15011000 21313000 1601400 26836000 16774000 24079000 18535000 18603000 15747000 15630000 21075000 2 2 2 2 2 2 2 2 2 2 2 7794800 10562000 6112.6 11900000 7846200 14764000 8587500 8582500 7196000 7330500 11373000 7257800 9860100 652660 12088000 7542300 14725000 8628900 9000500 7529800 7210900 10842000 1 1 1 1 1 1 1 1 1 1 1 8325100 12264000 258210 14713000 9605000 8809400 9836900 9505900 7896300 8581500 10698000 7753500 11453000 948780 14748000 9231200 9354200 9905800 9602100 8217400 8419200 10233000 1 1 1 1 1 1 1 1 1 1 1 2109600000 986060000 1123500000 21011 2006 19303 108999;109000;109001 132144;132145;132146 132144 3 VQAEAERLDQEEAQYQR Unmodified 2061.9716 0.97156 1710 Q14457 BECN1 Beclin-1 yes yes 0 0 0 1 By MS/MS 1 0 1 1 43.262 43.262 3 9.0267E-16 11283 20211116_3428_TMUAki_TMT10x_P_F1 142.58 129.95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21012 1710 19304 109002 132147 132147 1 VQAHAAAALINFTEDCPK Unmodified 1954.9571 0.95709591 84 O00410;O00410-2;O00410-3 IPO5 Importin-5 yes no 0 0 0 0 By MS/MS By MS/MS 6.62 1 2 4 4 3 6 7 59.605 59.86 3;4 7.7191E-18 17434 20211116_3434_TMUAki_TMT10x_P_F6 155.22 142.38 61475000 100120000 1179500 107850000 69394000 90063000 66167000 63398000 56924000 63907000 74364000 57247000 93447000 6154300 109220000 66519000 92249000 66999000 65819000 58934000 62394000 71197000 14 14 9 14 14 14 14 14 14 14 14 29998000 45971000 464500 51278000 36276000 61099000 35604000 30454000 26290000 31643000 34876000 27934000 42916000 2928900 52084000 34789000 60950000 35861000 32545000 27458000 30855000 33378000 6 6 4 6 6 6 6 6 6 6 6 31477000 54144000 714980 56576000 33118000 28964000 30563000 32944000 30634000 32264000 39488000 29313000 50531000 3225400 57132000 31730000 31299000 31137000 33274000 31476000 31538000 37819000 8 8 5 8 8 8 8 8 8 8 8 18937000000 8618700000 10318000000 21013 84 19305 109003;109004;109005;109006;109007;109008;109009;109010;109011;109012;109013;109014;109015 132148;132149;132150;132151;132152;132153;132154;132155;132156;132157;132158;132159;132160;132161;132162 132149 15 VQANLGAPDINIEGLDAK Unmodified 1836.9581 0.95814177 1555 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 70.766 70.749 3 6.8072E-05 22366 20211116_3445_TMUAki_TMT10x_S_F6 77.795 64.595 4569400 7288900 32996 6888300 4660500 6514800 5475700 4965200 4791500 4868300 5885800 4254700 6799800 400470 7049900 4490500 6625100 5490400 5123600 4943300 4758700 5644000 2 2 1 2 2 2 2 2 2 2 2 2027000 3055100 32996 3015300 1883100 3706700 2354500 2289500 2118700 2092500 2607300 1887500 2850600 196790 3089200 1819500 3701700 2356300 2393400 2183000 2051700 2500000 1 1 1 1 1 1 1 1 1 1 1 2542500 4233800 0 3873100 2777300 2808100 3121200 2675700 2672800 2775900 3278500 2367200 3949200 203680 3960700 2671000 2923400 3134100 2730100 2760300 2706900 3143900 1 1 0 1 1 1 1 1 1 1 1 982610000 606460000 376150000 21014 1555 19306 109016;109017;109018;109019 132163;132164 132164 2 VQAQGHTLQVAGLR Unmodified 1476.8161 0.8161094 2171 Q8IZ83;Q8IZ83-3 ALDH16A1 Aldehyde dehydrogenase family 16 member A1 yes no 0 0 0 0 By matching By MS/MS 1 0 2 1 1 36.76 36.73 3 2.5037E-06 10648 20211116_3439_TMUAki_TMT10x_S_F1 106.55 83.829 349200 595980 7721.4 650830 344770 284630 325230 535290 575930 425300 569140 325200 556320 36085 654600 330560 318180 338680 528300 574700 419900 549240 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 349200 595980 7721.4 650830 344770 284630 325230 535290 575930 425300 569140 325200 556320 36085 654600 330560 318180 338680 528300 574700 419900 549240 1 1 1 1 1 1 1 1 1 1 1 44012000 24552000 19460000 21015 2171 19307 109020;109021 132165 132165 1 VQAQVIQETIVPK Unmodified 1451.8348 0.83477916 1810 Q15459 SF3A1 Splicing factor 3A subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.4 0.49 3 2 3 2 58.896 59.412 2;3 9.2527E-19 17316 20211116_3434_TMUAki_TMT10x_P_F6 162.36 111.48 4664900 7324900 78695 7541600 5060300 4287600 4185100 7068300 6573900 6017100 6489600 4344100 6835800 465630 7629700 4834800 4631100 4364800 7014700 6580300 5920000 6262900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4664900 7324900 78695 7541600 5060300 4287600 4185100 7068300 6573900 6017100 6489600 4344100 6835800 465630 7629700 4834800 4631100 4364800 7014700 6580300 5920000 6262900 1 1 1 1 1 1 1 1 1 1 1 423460000 0 423460000 21016 1810 19308 109022;109023;109024;109025;109026 132166;132167;132168;132169;132170 132167 5 VQASLAANTFTITGHAETK Unmodified 1959.0062 0.0061545955 740 P20290;P20290-2 BTF3 Transcription factor BTF3 yes no 0 0 0 0 By MS/MS By MS/MS 4.94 2.48 2 2 2 1 2 2 2 4 8 9 53.229 53.257 3;4 1.3785E-50 15448 20211116_3436_TMUAki_TMT10x_P_F8 221.51 203.71 131660000 216210000 771020 221340000 129180000 163720000 116530000 107620000 105130000 106440000 138880000 122580000 201760000 9976200 224580000 123510000 169080000 118510000 112210000 108650000 104000000 132920000 26 26 14 26 26 26 26 26 26 26 26 64873000 100840000 308140 105780000 66088000 104140000 59789000 50352000 51438000 50819000 64350000 60397000 94111000 4624300 107540000 63159000 104980000 60717000 53923000 53153000 49614000 61676000 11 11 4 11 11 11 11 11 11 11 11 66787000 115370000 462890 115560000 63095000 59583000 56737000 57265000 53692000 55618000 74525000 62186000 107650000 5352000 117040000 60346000 64100000 57789000 58290000 55495000 54387000 71247000 15 15 10 15 15 15 15 15 15 15 15 20370000000 10356000000 10014000000 21017 740 19309 109027;109028;109029;109030;109031;109032;109033;109034;109035;109036;109037;109038;109039;109040;109041;109042;109043 132171;132172;132173;132174;132175;132176;132177;132178;132179;132180;132181;132182;132183;132184;132185;132186;132187;132188;132189;132190;132191;132192;132193;132194;132195;132196;132197 132180 27 VQAVVAVAR Unmodified 911.55525 0.55525025 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 0 By MS/MS 8 0 1 1 39.893 40.127 2 0.077862 9517 20211116_3447_TMUAki_TMT10x_S_F8 49.96 12.801 1021700 1916000 4334.3 1645600 1358000 1248300 921540 2859400 2296500 2140400 1955700 951350 1786800 93456 1692000 1291400 1332400 1000100 2804400 2264100 2120000 1897100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1021700 1916000 4334.3 1645600 1358000 1248300 921540 2859400 2296500 2140400 1955700 951350 1786800 93456 1692000 1291400 1332400 1000100 2804400 2264100 2120000 1897100 1 1 1 1 1 1 1 1 1 1 1 79581000 0 79581000 21018 1475 19310 109044 132198 132198 1 VQCCLYFIAPSGHGLKPLDIEFMK Oxidation (M) 2838.3907 0.39069939 1838 Q16181;Q16181-2 SEPT7 Septin-7 yes no 0 0 1 1 By MS/MS 3 0 1 1 76.222 76.104 4 0.0054246 26687 20211116_3430_TMUAki_TMT10x_P_F3 50.851 37.794 1692600 2901900 0 2581600 1540700 3930000 1831600 1659500 1417000 1799000 1897400 1576000 2706600 134430 2676500 1484400 3869400 1829800 1806000 1476800 1751200 1815400 1 1 0 1 1 1 1 1 1 1 1 1692600 2901900 0 2581600 1540700 3930000 1831600 1659500 1417000 1799000 1897400 1576000 2706600 134430 2676500 1484400 3869400 1829800 1806000 1476800 1751200 1815400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 393220000 393220000 0 21019 1838 19311 109045 132199 132199 2452 1 VQDDEVGDGTTSVTVLAAELLR Unmodified 2287.1543 0.15433498 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 0 By MS/MS By MS/MS 2.41 1.24 11 10 9 4 3 14 23 63.426 63.379 2;3 2.337E-144 28363 20211116_3439_TMUAki_TMT10x_S_F1 384.31 351.69 102350000 172630000 303510 149490000 123180000 151890000 127360000 105650000 103750000 112770000 129110000 95295000 160990000 6799900 154180000 118180000 153550000 128240000 109960000 107480000 109840000 123760000 51 51 22 51 51 51 51 51 51 51 51 51491000 82414000 79205 71175000 48217000 88740000 54868000 51163000 49461000 54937000 59603000 47941000 76859000 3303100 73667000 46376000 88475000 55140000 54028000 50915000 53499000 57183000 17 17 5 17 17 17 17 17 17 17 17 50861000 90212000 224300 78317000 74967000 63153000 72497000 54487000 54285000 57828000 69507000 47354000 84133000 3496900 80509000 71802000 65077000 73102000 55936000 56563000 56341000 66579000 34 34 17 34 34 34 34 34 34 34 34 84512000000 42285000000 42227000000 21020 1429 19312 109046;109047;109048;109049;109050;109051;109052;109053;109054;109055;109056;109057;109058;109059;109060;109061;109062;109063;109064;109065;109066;109067;109068;109069;109070;109071;109072;109073;109074;109075;109076;109077;109078;109079;109080;109081;109082 132200;132201;132202;132203;132204;132205;132206;132207;132208;132209;132210;132211;132212;132213;132214;132215;132216;132217;132218;132219;132220;132221;132222;132223;132224;132225;132226;132227;132228;132229;132230;132231;132232;132233;132234;132235;132236;132237;132238;132239;132240;132241;132242;132243;132244;132245;132246;132247;132248;132249;132250;132251;132252;132253;132254;132255 132222 56 VQDGKPVILLFR Unmodified 1383.8238 0.82382054 2928 Q9NRG9;Q9NRG9-2 AAAS Aladin yes no 0 0 0 1 By MS/MS By MS/MS 3 0 2 1 1 64.327 63.958 3 0.0010512 22850 20211116_3441_TMUAki_TMT10x_S_F3 74.475 52.389 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21021 2928 19313 109083;109084 132256;132257 132257 2 VQDLFCSVGLNVNNPHFLIMQGR Oxidation (M) 2673.3156 0.31556061 423 O95347;O95347-2 SMC2 Structural maintenance of chromosomes protein 2 yes no 0 0 1 0 By MS/MS 4 0 1 1 77.702 77.653 3 0.0029242 26154 20211116_3442_TMUAki_TMT10x_S_F4 54.235 48.42 1308500 2253400 33168 2148000 1819500 1936900 1929800 1748300 1543300 1690700 1911600 1218600 2102300 146550 2195600 1749400 1982000 1939700 1785300 1600000 1653600 1832700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1308500 2253400 33168 2148000 1819500 1936900 1929800 1748300 1543300 1690700 1911600 1218600 2102300 146550 2195600 1749400 1982000 1939700 1785300 1600000 1653600 1832700 1 1 1 1 1 1 1 1 1 1 1 1041900000 0 1041900000 21022 423 19314 109085 132258 132258 315 1 VQDLSAGGQGSLTDSGPERRPEGPGAQAPSSPR Unmodified 3260.577 0.57700793 981 P40222 TXLNA Alpha-taxilin yes yes 0 0 0 2 By MS/MS 4.5 0.5 1 1 2 37.66 37.671 4 7.4703E-134 9465 20211116_3431_TMUAki_TMT10x_P_F4 310.96 289.93 251990 516240 4677.9 437860 911440 1330800 586600 841150 749670 538030 528300 234660 481410 34487 465580 866050 1289700 617050 870860 747670 537960 516480 1 1 1 1 1 1 1 1 1 1 1 251990 516240 4677.9 437860 911440 1330800 586600 841150 749670 538030 528300 234660 481410 34487 465580 866050 1289700 617050 870860 747670 537960 516480 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 324370000 324370000 0 21023 981 19315 109086;109087 132259 132259 1 VQDTSNTGLGEDIIHQLSK Unmodified 2054.028 0.02801225 2141 Q8IWA0 WDR75 WD repeat-containing protein 75 yes yes 0 0 0 0 By MS/MS 5 0 1 1 66.167 66.281 3 8.0515E-05 21304 20211116_3433_TMUAki_TMT10x_P_F5 71.872 55.929 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21024 2141 19316 109088 132260 132260 1 VQEAIIHFR Unmodified 1111.6138 0.61382777 3145 Q9UJX3;Q9UJX3-2 ANAPC7 Anaphase-promoting complex subunit 7 yes no 0 0 0 0 By MS/MS 7 0 1 1 44.909 45.434 3 6.922E-05 13985 20211116_3446_TMUAki_TMT10x_S_F7 135.63 105.32 586200 1003700 39925 1038200 622060 564100 628280 951510 865930 752450 983210 546100 936710 86311 1049600 599030 612620 644320 941920 874700 743080 944840 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 586200 1003700 39925 1038200 622060 564100 628280 951510 865930 752450 983210 546100 936710 86311 1049600 599030 612620 644320 941920 874700 743080 944840 1 1 1 1 1 1 1 1 1 1 1 71489000 0 71489000 21025 3145 19317 109089 132261 132261 1 VQEGETIEDGARR Unmodified 1458.7063 0.70628418 954 P36639;P36639-4;P36639-3;P36639-2 NUDT1 7,8-dihydro-8-oxoguanine triphosphatase yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 30.151 30.183 3 1.9237E-09 8026 20211116_3439_TMUAki_TMT10x_S_F1 134.88 104.9 238360 446780 5767.4 398580 373910 351000 303560 233330 259230 220950 322970 221980 416710 27035 409310 357100 357870 310220 242800 267920 216300 309590 2 2 2 2 2 2 2 2 2 2 2 103070 194250 1755.5 158280 208150 197610 130660 106230 117840 95287 145630 95983 181120 11653 164600 197740 196830 136190 112290 121430 93513 139630 1 1 1 1 1 1 1 1 1 1 1 135290 252530 4011.9 240300 165760 153390 172900 127090 141400 125670 177340 125990 235600 15382 244710 159360 161040 174040 130500 146500 122790 169960 1 1 1 1 1 1 1 1 1 1 1 30579000 14382000 16197000 21026 954 19318 109090;109091 132262;132263 132263 2 VQELGLSAPLTVLPTITCGHTIEILR Unmodified 2830.5627 0.5626504 598 P35520;P0DN79;P35520-2 CBS Cystathionine beta-synthase yes no 0 0 0 0 By MS/MS 3.25 2.77 1 2 1 4 78.999 78.985 3;4 1.3598E-17 27321 20211116_3429_TMUAki_TMT10x_P_F2 130.78 119.16 11353000 16905000 188520 16419000 9877500 20592000 11502000 10866000 11594000 11742000 13209000 10572000 15772000 989660 16847000 9516300 20502000 11585000 11565000 11848000 11432000 12692000 6 6 3 6 6 6 6 6 6 6 6 11353000 16905000 188520 16419000 9877500 20592000 11502000 10866000 11594000 11742000 13209000 10572000 15772000 989660 16847000 9516300 20502000 11585000 11565000 11848000 11432000 12692000 6 6 3 6 6 6 6 6 6 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5346900000 5346900000 0 21027 598 19319 109092;109093;109094;109095 132264;132265;132266;132267;132268;132269 132265 6 VQENCIDLVGR Unmodified 1301.6398 0.63978452 345 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 45.97 45.807 2 5.0577E-08 14247 20211116_3430_TMUAki_TMT10x_P_F3 146.9 112.18 3689200 5922000 55613 7481800 5750000 5973300 3827200 5947000 5832000 5027000 5757500 3435400 5531700 386550 7499900 5468400 6177600 4044700 6020300 5842700 4947500 5556400 2 2 2 2 2 2 2 2 2 2 2 1681400 2520800 40693 3330700 4181100 4372500 2404000 2710500 2626600 2217500 2569000 1565900 2355200 212340 3356300 3966800 4352800 2538300 2824900 2660400 2186000 2480000 1 1 1 1 1 1 1 1 1 1 1 2007800 3401100 14920 4151000 1568900 1600800 1423300 3236600 3205300 2809500 3188500 1869500 3176400 174220 4143600 1501600 1824800 1506500 3195400 3182300 2761500 3076300 1 1 1 1 1 1 1 1 1 1 1 499230000 354360000 144870000 21028 345 19320 109096;109097;109098 132270;132271;132272 132270 3 VQEQELKSEFEQNLSEK Unmodified 2064.0011 0.0011287971 1872 Q16891;Q16891-2;Q16891-4;Q16891-3 IMMT MICOS complex subunit MIC60 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 65.61 65.228 3 1.7987E-39 21793 20211116_3429_TMUAki_TMT10x_P_F2 189.87 170.48 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21029 1872 19321 109099;109100;109101;109102 132273;132274;132275;132276 132274 4 VQEQVHTLLSQDQAQAAR Unmodified 2021.029 0.029015303 1536 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.816 1 1 1 2 1 45.848 45.988 3 1.2448E-17 11910 20211116_3444_TMUAki_TMT10x_S_F5 152.01 121.01 1055300 1957800 22766 2486400 963560 836780 594700 1871600 2030100 1571000 1611000 982720 1828800 107420 2474600 916020 977470 666950 1841700 1987600 1546700 1567000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1055300 1957800 22766 2486400 963560 836780 594700 1871600 2030100 1571000 1611000 982720 1828800 107420 2474600 916020 977470 666950 1841700 1987600 1546700 1567000 1 1 1 1 1 1 1 1 1 1 1 465110000 265790000 199320000 21030 1536 19322 109103;109104;109105 132277;132278 132278 2 VQETGDIVISNAYVDLAPTSGTSAK Unmodified 2535.2704 0.27042737 1161 P51659;P51659-3;P51659-2 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 0 0 0 0 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 74.029 74.009 3;4 1.2141E-17 24672 20211116_3442_TMUAki_TMT10x_S_F4 138.08 124.25 20445000 34755000 170530 31325000 21499000 24881000 21028000 18877000 17370000 19612000 23446000 19036000 32417000 1656400 32102000 20599000 25610000 21241000 19518000 18046000 19124000 22430000 8 8 3 8 8 8 8 8 8 8 8 8777200 15083000 0 13091000 6252600 12483000 7522700 7623500 7389300 7963400 9833300 8171300 14066000 543480 13487000 6017600 12645000 7560000 8006400 7609900 7763500 9410100 3 3 0 3 3 3 3 3 3 3 3 11667000 19672000 170530 18234000 15247000 12398000 13505000 11254000 9980400 11649000 13613000 10864000 18351000 1112900 18616000 14582000 12964000 13681000 11512000 10437000 11361000 13020000 5 5 3 5 5 5 5 5 5 5 5 2861700000 1292100000 1569600000 21031 1161 19323 109106;109107;109108;109109;109110 132279;132280;132281;132282;132283;132284;132285;132286 132282 8 VQGFQVEYKDFPK Unmodified 1583.7984 0.79839365 445 O95793;O95793-2;O95793-3 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes no 0 0 0 1 By MS/MS 8 0 1 1 59.052 59.229 3 0.00014772 17849 20211116_3436_TMUAki_TMT10x_P_F8 84.468 65.393 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21032 445 19324 109111 132287 132287 1 VQGGALEDSQLVAGVAFK Unmodified 1787.9418 0.94176342 2609 Q99832;Q99832-3;Q99832-4 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 By MS/MS By MS/MS 5.67 0.943 1 3 3 2 5 4 72.073 72.09 2;3 5.1614E-47 22622 20211116_3444_TMUAki_TMT10x_S_F5 214.23 189.44 58880000 98652000 619570 92789000 68663000 100110000 75512000 62667000 54587000 65366000 74680000 54825000 92031000 5256500 95184000 66024000 100690000 75589000 65686000 57161000 63729000 71419000 16 16 9 16 16 16 16 16 16 16 16 38444000 64393000 573580 61020000 43424000 77600000 50501000 41400000 36711000 43398000 49176000 35798000 60073000 3595400 62737000 41836000 77217000 50428000 43979000 38393000 42302000 47052000 11 11 7 11 11 11 11 11 11 11 11 20436000 34259000 45989 31769000 25239000 22508000 25011000 21267000 17875000 21969000 25504000 19028000 31958000 1661100 32447000 24188000 23473000 25161000 21707000 18768000 21427000 24366000 5 5 2 5 5 5 5 5 5 5 5 5544000000 3117000000 2427000000 21033 2609 19325 109112;109113;109114;109115;109116;109117;109118;109119;109120 132288;132289;132290;132291;132292;132293;132294;132295;132296;132297;132298;132299;132300;132301;132302;132303;132304;132305 132302 18 VQGGALEDSQLVAGVAFKK Unmodified 1916.0367 0.036726442 2609 Q99832;Q99832-3;Q99832-4 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 1 By MS/MS By MS/MS 7.33 0.667 1 4 4 5 4 64.65 64.921 3;4 2.8847E-41 19640 20211116_3447_TMUAki_TMT10x_S_F8 214.24 203.77 104540000 178060000 934600 174970000 136930000 167100000 122030000 141340000 122580000 129440000 140640000 97336000 166130000 9604900 178600000 130950000 170140000 124580000 144650000 125320000 126910000 135110000 13 13 6 13 13 13 13 13 13 13 13 54619000 90034000 468580 87630000 70893000 117700000 70292000 72289000 63595000 67187000 70723000 50858000 84002000 4988900 90016000 67975000 117030000 71124000 75637000 65243000 65829000 68003000 7 7 3 7 7 7 7 7 7 7 7 49916000 88023000 466030 87345000 66032000 49402000 51737000 69055000 58988000 62254000 69913000 46479000 82133000 4615900 88587000 62972000 53109000 53451000 69015000 60081000 61081000 67104000 6 6 3 6 6 6 6 6 6 6 6 19598000000 12043000000 7555600000 21034 2609 19326 109121;109122;109123;109124;109125;109126;109127;109128;109129 132306;132307;132308;132309;132310;132311;132312;132313;132314;132315;132316;132317;132318 132316 13 VQGSDSDEEVVVATTR Unmodified 1690.801 0.80097243 820 P26640;P26640-2 VARS Valine--tRNA ligase yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.667 4 4 1 5 4 40.941 40.85 2;3 5.3904E-93 12444 20211116_3439_TMUAki_TMT10x_S_F1 342.48 262.03 8937700 14130000 85590 18366000 18793000 13852000 9884000 10324000 11870000 9037100 13131000 8321800 13201000 870900 18370000 17795000 14311000 10553000 10636000 12034000 8879100 12628000 12 12 5 12 12 12 12 12 12 12 12 4198100 6241400 62220 8434500 14459000 10042000 5784500 4418700 5076900 3939800 5869000 3909000 5832100 511040 8473700 13647000 10005000 6299100 4762100 5223900 3867500 5637100 5 5 2 5 5 5 5 5 5 5 5 4739600 7888800 23370 9931400 4333900 3810000 4099500 5905000 6793200 5097300 7261800 4412800 7368700 359860 9895900 4147900 4306000 4254000 5873900 6809700 5011600 6990700 7 7 3 7 7 7 7 7 7 7 7 1277900000 823610000 454320000 21035 820 19327 109130;109131;109132;109133;109134;109135;109136;109137;109138 132319;132320;132321;132322;132323;132324;132325;132326;132327;132328;132329;132330;132331 132327 13 VQHVIHYQVPR Unmodified 1374.7521 0.75205258 2756 Q9GZR7;Q9GZR7-2 DDX24 ATP-dependent RNA helicase DDX24 yes no 0 0 0 0 By MS/MS By matching 1 0 2 1 1 32.839 32.844 4 0.00025902 7063 20211116_3428_TMUAki_TMT10x_P_F1 87.789 71.898 1458000 2166800 0 1725800 2228800 2362400 1856200 1697400 1650300 1452900 1873200 1357100 2020200 82509 1801200 2124500 2352400 1895900 1752000 1695800 1429100 1800100 2 2 0 2 2 2 2 2 2 2 2 1458000 2166800 0 1725800 2228800 2362400 1856200 1697400 1650300 1452900 1873200 1357100 2020200 82509 1801200 2124500 2352400 1895900 1752000 1695800 1429100 1800100 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31598000 18883000 12716000 21036 2756 19328 109139;109140 132332;132333 132332 2 VQIAVANAQELLQR Unmodified 1551.8733 0.87328993 3323 Q9Y5L4 TIMM13 Mitochondrial import inner membrane translocase subunit Tim13 yes yes 0 0 0 0 By MS/MS By MS/MS 4 3.46 4 3 3 4 69.472 69.533 2;3 4.5261E-30 24057 20211116_3439_TMUAki_TMT10x_S_F1 206.18 174.11 25569000 35894000 177320 40501000 20501000 26888000 26642000 7109800 6100700 8821100 20170000 23808000 33510000 2208600 40789000 19822000 27787000 26067000 8278200 7604500 8544600 19022000 3 3 2 3 3 3 3 3 3 3 3 25569000 35894000 177320 40501000 20501000 26888000 26642000 7109800 6100700 8821100 20170000 23808000 33510000 2208600 40789000 19822000 27787000 26067000 8278200 7604500 8544600 19022000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1188500000 1188500000 0 21037 3323 19329 109141;109142;109143;109144;109145;109146;109147 132334;132335;132336;132337;132338;132339;132340 132339 7 VQIFEYNENTR Unmodified 1411.6732 0.67319314 2441 Q96EE3-1;Q96EE3 SEH1L Nucleoporin SEH1 yes no 0 0 0 0 By MS/MS 4 0 1 1 52.572 52.651 2 6.2228E-05 15906 20211116_3442_TMUAki_TMT10x_S_F4 100.55 76.219 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21038 2441 19330 109148 132341 132341 1 VQIQESVR Unmodified 957.52434 0.52434406 259 O60256;O60256-3 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 yes no 0 0 0 0 By MS/MS 3 0 1 1 34.277 34.037 2 0.10113 10619 20211116_3441_TMUAki_TMT10x_S_F3 48.036 23.113 736960 1182900 1856.9 1311300 813930 737430 781370 684840 722190 728170 965830 686200 1104300 63908 1320100 779720 785460 792450 700250 745940 709380 924160 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 736960 1182900 1856.9 1311300 813930 737430 781370 684840 722190 728170 965830 686200 1104300 63908 1320100 779720 785460 792450 700250 745940 709380 924160 1 1 1 1 1 1 1 1 1 1 1 10941000 0 10941000 21039 259 19331 109149 132342 132342 1 VQIQSNRENLEQAFEVAER Unmodified 2259.1244 0.12437225 3206 Q9UPN3;Q9UPN3-2;Q9UPN3-4;Q9UPN3-3 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 0 0 0 1 By MS/MS 4 0 1 1 56.238 56.191 3 0.0090029 17379 20211116_3442_TMUAki_TMT10x_S_F4 50.924 34.43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21040 3206 19332 109150 132343 132343 1 VQISPDSGGLPER Unmodified 1353.6888 0.6888432 2380 Q92945 KHSRP Far upstream element-binding protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 43.606 43.565 2 1.0796E-19 11811 20211116_3431_TMUAki_TMT10x_P_F4 197.3 150.1 7518500 11115000 519.13 17183000 15993000 11823000 7695600 11361000 13783000 9159100 12282000 6999800 10394000 661760 17021000 15121000 12364000 8428300 11509000 13703000 9036000 11894000 7 7 1 7 7 7 7 7 7 7 7 3551200 4879100 0 7447900 12924000 9439000 4769300 4954700 6006800 4179900 5469700 3306300 4562300 392650 7446400 12185000 9392200 5302400 5240700 6037700 4114200 5293000 3 3 0 3 3 3 3 3 3 3 3 3967300 6235600 519.13 9735100 3069600 2383700 2926300 6406500 7776600 4979200 6812200 3693600 5831600 269120 9574300 2936600 2972200 3125900 6268000 7664900 4921800 6601400 4 4 1 4 4 4 4 4 4 4 4 1543800000 1069700000 474090000 21041 2380 19333 109151;109152;109153;109154;109155;109156 132344;132345;132346;132347;132348;132349;132350 132346 7 VQLDTIQGELNAPTQFK Unmodified 1900.9894 0.9894419 2075 Q7Z3B4;Q7Z3B4-2;Q7Z3B4-3 NUP54 Nucleoporin p54 yes no 0 0 0 0 By MS/MS 6 0 1 1 71.703 71.647 3 1.6359E-08 22357 20211116_3434_TMUAki_TMT10x_P_F6 119.4 100.33 2428700 3879600 46909 3621900 2785000 5255900 3082600 2898400 2952400 3012900 3207200 2261700 3619200 250060 3737500 2680700 5200600 3107200 3069300 3018300 2937800 3086000 1 1 1 1 1 1 1 1 1 1 1 2428700 3879600 46909 3621900 2785000 5255900 3082600 2898400 2952400 3012900 3207200 2261700 3619200 250060 3737500 2680700 5200600 3107200 3069300 3018300 2937800 3086000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 533700000 533700000 0 21042 2075 19334 109157 132351 132351 1 VQLGGSDQLGNIMSGYEFINK Oxidation (M) 2285.0998 0.099796984 3257 Q9Y2Z4 YARS2 Tyrosine--tRNA ligase, mitochondrial yes yes 0 0 1 0 By MS/MS 7 0 1 1 74.886 75.024 3 3.1237E-10 26190 20211116_3446_TMUAki_TMT10x_S_F7 107.45 89.536 1859600 3280100 0 3075200 2549300 2387300 2438500 1724000 1967100 1979800 2450300 1731500 3059900 163750 3141400 2441600 2459600 2464700 1794000 2039000 1923100 2348800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1859600 3280100 0 3075200 2549300 2387300 2438500 1724000 1967100 1979800 2450300 1731500 3059900 163750 3141400 2441600 2459600 2464700 1794000 2039000 1923100 2348800 1 1 0 1 1 1 1 1 1 1 1 247380000 0 247380000 21043 3257 19335 109158 132352 132352 3236 1 VQLNVFDEQGEEDSYDLK Unmodified 2126.9644 0.96440894 279 O60610;O60610-2;O60610-3 DIAPH1 Protein diaphanous homolog 1 yes no 0 0 0 0 By MS/MS 1 0 1 1 73.198 73.198 3 5.0324E-06 23493 20211116_3428_TMUAki_TMT10x_P_F1 90.385 82.582 3239000 5041000 11914 4399600 3135200 5934300 3649700 2842400 3049300 3178300 3669000 3015900 4701400 278180 4556600 3019900 5881300 3656500 3056100 3150400 3090300 3520200 1 1 1 1 1 1 1 1 1 1 1 3239000 5041000 11914 4399600 3135200 5934300 3649700 2842400 3049300 3178300 3669000 3015900 4701400 278180 4556600 3019900 5881300 3656500 3056100 3150400 3090300 3520200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 956830000 956830000 0 21044 279 19336 109159 132353 132353 1 VQLTTCIHHIIK Unmodified 1461.8126 0.81260393 425 O95373 IPO7 Importin-7 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 45.415 45.254 4 3.1119E-07 12341 20211116_3440_TMUAki_TMT10x_S_F2 123.2 93.516 1803200 2753200 19211 3329000 2367000 2029600 1826400 1784200 1331500 1500200 2089400 1679100 2571200 168340 3336000 2256700 2142200 1865600 1817900 1403100 1476900 1992100 2 2 1 2 2 2 2 2 2 2 2 820290 1306700 19211 1457100 1613100 1394800 1056700 899300 676520 762060 952600 763920 1219800 97015 1474900 1533900 1413700 1089200 935250 714680 749920 910390 1 1 1 1 1 1 1 1 1 1 1 982920 1446600 0 1871900 753960 634710 769740 884860 654930 738190 1136800 915140 1351400 71329 1861100 722880 728540 776410 882650 688400 727000 1081700 1 1 0 1 1 1 1 1 1 1 1 239010000 151130000 87878000 21045 425 19337 109160;109161 132354;132355 132355 2 VQLVGLDEESSEFICR Unmodified 1879.8986 0.89857798 1325 P61962 DCAF7 DDB1- and CUL4-associated factor 7 yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.667 4 4 1 5 4 71.961 71.844 2;3 4.0255E-10 22929 20211116_3428_TMUAki_TMT10x_P_F1 123.1 86.65 24785000 41856000 457590 38762000 27240000 35216000 29787000 21015000 18536000 22637000 29360000 23080000 39044000 2412500 39709000 26204000 35775000 29733000 22132000 19734000 22041000 27987000 10 10 6 10 10 10 10 10 10 10 10 14406000 23516000 247980 22140000 13172000 23859000 16614000 11459000 10092000 12090000 16615000 13414000 21938000 1307100 22709000 12725000 23921000 16471000 12295000 10784000 11782000 15826000 5 5 2 5 5 5 5 5 5 5 5 10379000 18339000 209600 16622000 14067000 11357000 13173000 9556400 8444200 10547000 12744000 9665700 17106000 1105400 16999000 13478000 11854000 13262000 9836800 8950000 10260000 12161000 5 5 4 5 5 5 5 5 5 5 5 8182800000 4833000000 3349800000 21046 1325 19338 109162;109163;109164;109165;109166;109167;109168;109169;109170 132356;132357;132358;132359;132360;132361;132362;132363;132364;132365 132357 10 VQLVVGDGR Unmodified 941.52943 0.52942943 764 P22061;P22061-2 PCMT1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes no 0 0 0 0 By MS/MS By MS/MS 4.71 1.03 1 2 2 2 4 3 43.039 43.165 2 0.0003961 10783 20211116_3444_TMUAki_TMT10x_S_F5 124.74 64.669 20917000 32643000 311310 36371000 28539000 29806000 22800000 24409000 25704000 23026000 27102000 19477000 30473000 2014100 36743000 27232000 30648000 23517000 25048000 26072000 22545000 26101000 6 6 5 6 6 6 6 6 6 6 6 11107000 16998000 109010 17975000 19544000 21076000 13391000 11701000 12743000 10934000 13376000 10342000 15865000 1023600 18315000 18584000 21069000 13885000 12347000 13015000 10710000 12884000 3 3 2 3 3 3 3 3 3 3 3 9809600 15645000 202300 18396000 8994600 8729800 9409200 12708000 12962000 12092000 13726000 9135300 14608000 990410 18428000 8647200 9578900 9632500 12701000 13058000 11835000 13217000 3 3 3 3 3 3 3 3 3 3 3 869400000 466840000 402550000 21047 764 19339 109171;109172;109173;109174;109175;109176;109177 132366;132367;132368;132369;132370;132371;132372 132371 7 VQPGDRVNVTGIYR Unmodified 1572.8372 0.83723877 911 P33991 MCM4 DNA replication licensing factor MCM4 yes yes 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 38.468 38.813 3 7.5961E-24 9480 20211116_3436_TMUAki_TMT10x_P_F8 194 141.72 2261300 3710400 36536 4607700 3341400 2933800 2192800 2496500 2749100 2178900 3139200 2105800 3465600 236650 4612200 3177200 3082200 2301500 2550800 2786300 2141100 3016200 4 4 4 4 4 4 4 4 4 4 4 1042600 1704700 17525 2134500 2321400 2194800 1294500 1043000 1258600 982430 1360000 970900 1592300 120680 2148100 2201100 2206300 1365600 1116700 1285600 961990 1308800 2 2 2 2 2 2 2 2 2 2 2 1218700 2005700 19011 2473200 1019900 739070 898300 1453500 1490500 1196500 1779200 1134900 1873300 115970 2464100 976060 875940 935880 1434100 1500700 1179100 1707400 2 2 2 2 2 2 2 2 2 2 2 475770000 332510000 143260000 21048 911 19340 109178;109179;109180 132373;132374;132375;132376 132374 4 VQPGHCYHLYNGLR Unmodified 1712.8205 0.82054285 2794 Q9H2U1;Q9H2U1-3;Q9H2U1-2 DHX36 ATP-dependent RNA helicase DHX36 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 34.329 34.323 4 5.3326E-19 7645 20211116_3428_TMUAki_TMT10x_P_F1 166.24 151.14 468510 800200 5714.1 886670 855010 751350 574630 553070 632530 496440 689780 436260 746990 47927 896410 813010 769310 599320 570640 642990 487180 663630 2 2 1 2 2 2 2 2 2 2 2 200850 351970 5714.1 394880 610040 537720 292410 271240 315800 226190 303380 187060 328590 27708 401950 577290 532990 313930 287880 319810 222760 293050 1 1 1 1 1 1 1 1 1 1 1 267660 448230 0 491790 244970 213630 282220 281830 316730 270250 386390 249210 418410 20218 494470 235720 236320 285390 282760 323180 264420 370580 1 1 0 1 1 1 1 1 1 1 1 120100000 89320000 30783000 21049 2794 19341 109181;109182 132377;132378 132377 2 VQPYLDEFQK Unmodified 1265.6292 0.62920306 42 CON__P15497 yes yes 0 0 0 0 By MS/MS By MS/MS 5.25 0.433 3 1 2 2 61.424 61.553 2;3 1.5016E-07 18590 20211116_3445_TMUAki_TMT10x_S_F6 121.5 77.694 + 19360000 31840000 634330 34771000 28201000 43619000 24881000 31648000 33937000 28410000 28424000 18031000 29721000 2320100 35397000 26996000 43621000 25692000 32685000 33933000 27880000 27590000 3 3 3 3 3 3 3 3 3 3 3 15686000 25292000 595870 27708000 24971000 40643000 21814000 24968000 24983000 22262000 22342000 14610000 23609000 1985800 28290000 23900000 40254000 22390000 26096000 25184000 21854000 21634000 2 2 2 2 2 2 2 2 2 2 2 3674400 6548400 38454 7062100 3230300 2976100 3066300 6679700 8953600 6147500 6082000 3421500 6112300 334250 7107100 3095500 3367200 3301200 6588700 8749200 6025900 5956000 1 1 1 1 1 1 1 1 1 1 1 654120000 416160000 237960000 21050 42 19342 109183;109184;109185;109186 132379;132380;132381;132382;132383 132383 5 VQPYLDEFQKK Unmodified 1393.7242 0.72416608 42 CON__P15497 yes yes 0 0 0 1 By MS/MS 7 0 1 1 54.682 55.403 3 0.00079923 17514 20211116_3435_TMUAki_TMT10x_P_F7 81.239 52.942 + 4359800 7458700 134870 6624500 12842000 15781000 7711500 11159000 13761000 8317100 8557600 4060400 6956600 605960 6953900 12193000 15408000 8277600 11494000 13550000 8240000 8416200 1 1 1 1 1 1 1 1 1 1 1 4359800 7458700 134870 6624500 12842000 15781000 7711500 11159000 13761000 8317100 8557600 4060400 6956600 605960 6953900 12193000 15408000 8277600 11494000 13550000 8240000 8416200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 721300000 721300000 0 21051 42 19343 109187 132384 132384 1 VQQTVQDLFGR Unmodified 1289.6728 0.67279921 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 1.12 2 2 2 2 4 4 65.601 65.773 2 1.6071E-47 22211 20211116_3446_TMUAki_TMT10x_S_F7 300.33 254.31 64908000 109850000 216960 114940000 88126000 101770000 61788000 97806000 107130000 87571000 99619000 60435000 102520000 5608200 116260000 83831000 104400000 64648000 98762000 106740000 85948000 96332000 8 8 4 7 8 8 7 7 8 8 8 26910000 44931000 195230 43000000 56037000 71759000 35308000 35244000 43826000 32040000 41586000 25056000 41918000 2599800 43991000 53207000 70509000 36355000 37006000 44133000 31424000 40186000 5 5 3 4 5 5 4 4 5 5 5 37998000 64919000 21727 71945000 32090000 30013000 26480000 62562000 63304000 55531000 58033000 35379000 60602000 3008400 72272000 30624000 33893000 28293000 61756000 62602000 54524000 56146000 3 3 1 3 3 3 3 3 3 3 3 33547000000 20349000000 13198000000 21052 972 19344 109188;109189;109190;109191;109192;109193;109194;109195 132385;132386;132387;132388;132389;132390;132391;132392;132393 132392 9 VQREPLLTLVK Unmodified 1294.7973 0.79727144 1609 Q13200;Q13200-3;Q13200-2 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 0 1 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 53.892 53.828 3 6.3057E-08 15516 20211116_3428_TMUAki_TMT10x_P_F1 121.21 55.861 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21053 1609 19345 109196;109197;109198 132394;132395;132396 132394 3 VQRPCTSTPMIDSFVR Oxidation (M) 1908.9186 0.91860192 1729 Q14694;Q14694-3;Q14694-2 USP10 Ubiquitin carboxyl-terminal hydrolase 10 yes no 0 0 1 1 By MS/MS By MS/MS 2.75 3.03 3 1 2 2 43.832 43.77 3 5.2384E-05 11024 20211116_3447_TMUAki_TMT10x_S_F8 85.576 66.377 1704900 3039200 42061 3418200 2785100 3416600 2012200 3635900 3743800 2897000 2975600 1587800 2837300 195680 3460400 2653600 3485600 2135000 3663500 3705600 2859800 2894200 3 3 3 3 3 3 3 3 3 3 3 801060 1461100 24518 1617400 2048000 2656700 1419400 1694200 1740500 1406300 1400900 746050 1364000 106730 1654500 1949400 2620700 1482600 1762500 1744600 1385400 1361900 1 1 1 1 1 1 1 1 1 1 1 903850 1578100 17543 1800800 737110 759910 592720 1941700 2003300 1490700 1574600 841710 1473400 88950 1805800 704210 864910 652430 1901000 1961000 1474400 1532300 2 2 2 2 2 2 2 2 2 2 2 373810000 198990000 174820000 21054 1729 19346 109199;109200;109201;109202 132397;132398;132399;132400 132400 2322 4 VQSLQATFGTFESILR Unmodified 1795.9468 0.9468488 1536 Q07065 CKAP4 Cytoskeleton-associated protein 4 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.667 4 4 1 4 5 80.282 80.244 2;3 1.7144E-69 29321 20211116_3441_TMUAki_TMT10x_S_F3 310.81 256.03 24949000 40495000 55648 38417000 31225000 39153000 33091000 25339000 23186000 26677000 33699000 23226000 37779000 1484000 39349000 29955000 39531000 33161000 26500000 24394000 25999000 32183000 8 8 1 8 8 8 8 8 8 8 8 14582000 23347000 55648 20349000 14620000 25108000 17205000 14711000 12759000 15478000 19250000 13574000 21774000 841250 21043000 14059000 25051000 17179000 15505000 13405000 15085000 18369000 4 4 1 4 4 4 4 4 4 4 4 10368000 17148000 0 18067000 16604000 14046000 15886000 10628000 10427000 11199000 14449000 9652300 16004000 642720 18306000 15895000 14480000 15983000 10995000 10989000 10914000 13814000 4 4 0 4 4 4 4 4 4 4 4 16217000000 8936700000 7280000000 21055 1536 19347 109203;109204;109205;109206;109207;109208;109209;109210;109211 132401;132402;132403;132404;132405;132406;132407;132408;132409 132409 9 VQSPKPLFR Unmodified 1070.6237 0.62366417 2225 Q8NBM8 PCYOX1L Prenylcysteine oxidase-like yes yes 0 0 0 1 By MS/MS 3.5 0.5 1 1 2 39.283 39.464 3 0.025047 13127 20211116_3441_TMUAki_TMT10x_S_F3 61.815 36.157 643350 1042700 5078.7 1119200 700950 589420 678830 779290 749090 723190 904700 599060 973210 58878 1128400 671850 637410 691900 781070 764520 708620 867910 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 643350 1042700 5078.7 1119200 700950 589420 678830 779290 749090 723190 904700 599060 973210 58878 1128400 671850 637410 691900 781070 764520 708620 867910 1 1 1 1 1 1 1 1 1 1 1 23845000 0 23845000 21056 2225 19348 109212;109213 132410;132411 132410 2 VQSTAFFSGDQASTDKEEDYIR Unmodified 2493.1296 0.12957679 1942 Q5TBB1;Q5TBB1-2 RNASEH2B Ribonuclease H2 subunit B yes no 0 0 0 1 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 57.639 57.707 3 2.2723E-55 17983 20211116_3442_TMUAki_TMT10x_S_F4 219.64 210.15 13468000 22811000 119400 24950000 18694000 26083000 16454000 20636000 19428000 18930000 19084000 12540000 21293000 1177400 25319000 17868000 26379000 16899000 21206000 19622000 18558000 18421000 4 4 2 4 4 4 4 4 4 4 4 8243400 13112000 89867 14942000 13584000 20925000 12538000 12328000 11455000 11408000 11108000 7675200 12242000 727970 15203000 12996000 20755000 12739000 12941000 11689000 11179000 10726000 2 2 1 2 2 2 2 2 2 2 2 5224200 9698500 29534 10008000 5110700 5157700 3915600 8308200 7972500 7522500 7976200 4864400 9050900 449460 10115000 4871500 5624300 4159900 8264700 7933200 7379200 7694200 2 2 1 2 2 2 2 2 2 2 2 2078300000 876940000 1201300000 21057 1942 19349 109214;109215;109216 132412;132413;132414;132415 132415 4 VQSVETVEGCTHEVALPAEEDYLPLKPR Unmodified 3165.5652 0.56522918 1010 P42285 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 0 0 0 1 By MS/MS By MS/MS 4.71 1.03 1 2 2 2 4 3 64.007 63.984 4 5.7504E-42 19178 20211116_3434_TMUAki_TMT10x_P_F6 185.17 176.2 39442000 70903000 559190 68095000 47610000 65040000 46418000 41072000 40674000 43128000 50516000 36727000 66149000 3258400 69621000 45643000 65908000 46968000 43030000 41979000 42036000 48426000 14 14 7 14 14 14 14 14 14 14 14 22950000 41398000 462950 39968000 27348000 47685000 29230000 24010000 24179000 25144000 29552000 21372000 38624000 1896100 40990000 26296000 47571000 29394000 25641000 25009000 24510000 28342000 9 9 5 9 9 9 9 9 9 9 9 16492000 29505000 96235 28128000 20262000 17355000 17188000 17061000 16495000 17984000 20964000 15356000 27526000 1362200 28631000 19347000 18338000 17574000 17389000 16970000 17526000 20084000 5 5 2 5 5 5 5 5 5 5 5 8668200000 4671400000 3996800000 21058 1010 19350 109217;109218;109219;109220;109221;109222;109223 132416;132417;132418;132419;132420;132421;132422;132423;132424;132425;132426;132427;132428;132429 132423 14 VQTERPQPQTLQLDFLMK Oxidation (M) 2187.1358 0.13578856 82 O00399 DCTN6 Dynactin subunit 6 yes yes 0 0 1 1 By MS/MS 8 0 1 1 62.398 62.403 3 0.00011595 18631 20211116_3447_TMUAki_TMT10x_S_F8 77.39 59.473 1837100 3435300 0 3032800 2442600 2365300 2283800 2769200 2766900 2398400 3005900 1710500 3204000 155180 3112400 2337700 2459800 2339800 2784100 2802200 2357700 2892300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1837100 3435300 0 3032800 2442600 2365300 2283800 2769200 2766900 2398400 3005900 1710500 3204000 155180 3112400 2337700 2459800 2339800 2784100 2802200 2357700 2892300 1 1 0 1 1 1 1 1 1 1 1 451500000 0 451500000 21059 82 19351 109224 132430 132430 50 1 VQTGEEGMPLSTIR Oxidation (M) 1532.7505 0.75045718 1469 Q00534 CDK6 Cyclin-dependent kinase 6 yes yes 0 0 1 0 By MS/MS By MS/MS 2.75 0.433 1 3 2 2 39.446 39.405 2;3 0.0016284 11166 20211116_3430_TMUAki_TMT10x_P_F3 63.212 50.681 650020 1106500 7839.7 1282200 923730 802300 583100 952350 1132900 801170 1134100 605270 1033100 62093 1288400 877440 850300 626290 956190 1128500 788700 1094000 3 3 1 3 3 3 3 3 3 3 3 193920 291710 0 366510 442400 379360 232510 198980 206870 171770 275220 180530 272470 16619 368810 418730 381620 246020 210590 214000 168880 263380 2 2 0 2 2 2 2 2 2 2 2 456110 814780 7839.7 915660 481330 422940 350590 753380 926040 629410 858920 424740 760650 45474 919630 458710 468680 380270 745590 914520 619820 830640 1 1 1 1 1 1 1 1 1 1 1 80962000 23328000 57634000 21060 1469 19352 109225;109226;109227;109228 132431;132432;132433 132432 1971 3 VQTLQFHPFEAQTLISGSYDK Unmodified 2408.2012 0.20122559 1653 Q13610 PWP1 Periodic tryptophan protein 1 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 73.107 73.122 3 3.2973E-35 23569 20211116_3436_TMUAki_TMT10x_P_F8 191.22 175.97 22172000 34784000 49628 36536000 19953000 24273000 22856000 13774000 14162000 16171000 21489000 20644000 32464000 1789400 36966000 19203000 25249000 22763000 14606000 15048000 15695000 20502000 5 5 3 5 5 5 5 5 5 5 5 12525000 18598000 28595 19393000 8790000 15260000 10759000 6837900 7185400 8424800 10969000 11662000 17357000 961210 19666000 8476100 15612000 10700000 7424800 7600500 8162800 10464000 2 2 1 2 2 2 2 2 2 2 2 9646600 16186000 21033 17143000 11163000 9013200 12096000 6936300 6976300 7746100 10520000 8982000 15107000 828210 17300000 10727000 9636800 12062000 7181400 7447000 7531900 10039000 3 3 2 3 3 3 3 3 3 3 3 2721100000 1258200000 1462900000 21061 1653 19353 109229;109230;109231 132434;132435;132436;132437;132438 132434 5 VQTLSNQPLLK Unmodified 1239.7187 0.71868677 2181 Q8N163;Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 1 1 1 1 53.502 53.408 3 4.8437E-05 17510 20211116_3439_TMUAki_TMT10x_S_F1 99.522 49.239 3272600 5262700 64350 5683800 4832700 5923600 3682700 4672300 4604200 4264900 4699100 3047600 4912200 353150 5772200 4608800 5991700 3824200 4801400 4647100 4182100 4530100 2 2 2 2 2 2 2 2 2 2 2 2045700 3030400 50436 3422800 3627900 4710500 2501700 2888000 2694800 2587400 2804400 1905200 2829200 238770 3483400 3453400 4678300 2602500 3019300 2737000 2539400 2702000 1 1 1 1 1 1 1 1 1 1 1 1226900 2232300 13914 2261000 1204700 1213200 1181000 1784200 1909400 1677500 1894700 1142500 2083100 114380 2288900 1155400 1313400 1221700 1782100 1910100 1642700 1828200 1 1 1 1 1 1 1 1 1 1 1 406540000 301500000 105040000 21062 2181 19354 109232;109233 132439;132440 132440 2 VQVALEELQDLK Unmodified 1383.7609 0.76094551 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4 1 1 1 1 1 78.528 78.458 2;3 1.033E-07 28576 20211116_3441_TMUAki_TMT10x_S_F3 138.63 103.18 4011400 7409600 129210 7146400 4570900 4822500 5348700 3701000 3815600 4126700 5475900 3736000 6913000 460830 7274300 4410200 5031000 5337300 3832300 4007700 4012800 5231000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4011400 7409600 129210 7146400 4570900 4822500 5348700 3701000 3815600 4126700 5475900 3736000 6913000 460830 7274300 4410200 5031000 5337300 3832300 4007700 4012800 5231000 1 1 1 1 1 1 1 1 1 1 1 356870000 0 356870000 21063 1695 19355 109234;109235 132441;132442 132442 2 VQVEYKGETK Unmodified 1179.6136 0.61355299 615 P11142;P11142-2;P54652 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 4.29 1.67 1 1 1 2 2 3 4 36.619 36.591 3 0.00021445 8087 20211116_3444_TMUAki_TMT10x_S_F5 110.31 91.174 33564000 50720000 513690 51862000 31188000 38410000 33573000 21055000 22060000 24094000 34027000 31254000 47331000 3054300 52626000 29984000 39570000 33573000 22374000 23370000 23407000 32454000 6 6 4 6 6 6 6 6 6 6 6 17967000 25835000 72234 26902000 14776000 21184000 12257000 10967000 11207000 12758000 16882000 16728000 24110000 1339700 27284000 14097000 21704000 12532000 11720000 11648000 12386000 16110000 2 2 1 2 2 2 2 2 2 2 2 15597000 24885000 441460 24959000 16412000 17227000 21316000 10088000 10853000 11336000 17145000 14526000 23221000 1714600 25342000 15887000 17866000 21041000 10654000 11722000 11020000 16344000 4 4 3 4 4 4 4 4 4 4 4 2613400000 1766200000 847250000 21064 615 19356 109236;109237;109238;109239;109240;109241;109242 132443;132444;132445;132446;132447;132448;132449;132450 132449 8 VQVQDNEGCPVEALVK Unmodified 1783.8774 0.87744861 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 59.127 59.053 3 3.5486E-15 18056 20211116_3431_TMUAki_TMT10x_P_F4 147.51 134.67 10638000 17880000 248020 19327000 16935000 21575000 14354000 14570000 13996000 13236000 15325000 9906800 16689000 1194300 19648000 16188000 21683000 14683000 15128000 14302000 12982000 14742000 4 4 3 4 4 4 4 4 4 4 4 8082700 13205000 224300 14442000 14304000 19097000 12144000 10809000 10642000 9977800 11523000 7527400 12326000 959320 14716000 13674000 18981000 12384000 11384000 10923000 9779100 11089000 3 3 2 3 3 3 3 3 3 3 3 2555400 4675400 23729 4884900 2631100 2478500 2210000 3761000 3354600 3257800 3801800 2379500 4363400 235030 4932600 2513700 2702200 2299100 3744200 3378500 3202400 3653700 1 1 1 1 1 1 1 1 1 1 1 2590400000 2020400000 569990000 21065 755 19357 109243;109244;109245 132451;132452;132453;132454 132453 4 VQVQVVER Unmodified 955.54508 0.5450795 373 O75955;O75955-2 FLOT1 Flotillin-1 yes no 0 0 0 0 By MS/MS By MS/MS 3.2 1.17 2 1 1 1 2 3 35.572 35.506 2 0.0016486 8655 20211116_3431_TMUAki_TMT10x_P_F4 119.21 67.356 3677100 5811200 5019.3 6365200 4657300 4989200 3700100 3959000 4018000 3584100 4792100 3423600 5424600 298210 6433900 4440200 5144400 3813000 4066000 4101100 3515900 4598800 3 3 1 3 3 3 3 3 3 3 3 1827800 2902900 0 3084600 2807700 3327100 1951400 2027400 2042300 1762200 2320500 1701800 2709400 158400 3137600 2670200 3345300 2027000 2118900 2083600 1732000 2229900 1 1 0 1 1 1 1 1 1 1 1 1849300 2908400 5019.3 3280600 1849600 1662100 1748700 1931600 1975700 1822000 2471600 1721700 2715200 139810 3296300 1770000 1799200 1786000 1947000 2017600 1783900 2368900 2 2 1 2 2 2 2 2 2 2 2 195860000 134680000 61177000 21066 373 19358 109246;109247;109248;109249;109250 132455;132456;132457 132455 3 VQVSVLK Unmodified 771.48544 0.48543935 476 P00966 ASS1 Argininosuccinate synthase yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 46.997 47.017 2 0.049051 12434 20211116_3447_TMUAki_TMT10x_S_F8 69.628 26.504 12408000 20590000 307730 24364000 24243000 24426000 15802000 18181000 17757000 15857000 19854000 11556000 19226000 1481300 24590000 23052000 24740000 16530000 18731000 18054000 15583000 19088000 2 2 2 2 2 2 2 2 2 2 2 6347700 11353000 101430 12783000 18113000 19143000 10531000 9714500 9692500 8435100 10700000 5911000 10598000 785570 13034000 17183000 18897000 11052000 10315000 9932800 8290800 10290000 1 1 1 1 1 1 1 1 1 1 1 6060700 9237000 206310 11582000 6130200 5283300 5271200 8466400 8064500 7422400 9154900 5644600 8627800 695720 11556000 5868900 5842300 5478200 8416200 8120700 7292100 8797600 1 1 1 1 1 1 1 1 1 1 1 315940000 143990000 171950000 21067 476 19359 109251;109252 132458;132459 132459 2 VQVVGTYR Unmodified 920.50797 0.50796571 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 0 By MS/MS By MS/MS 7.4 0.8 1 1 3 4 1 34.103 34.417 2 0.00098653 7362 20211116_3447_TMUAki_TMT10x_S_F8 130.28 95.03 1831500 2977000 19844 3079400 2784600 2741300 2202600 1464000 1408600 1445900 2229800 1705400 2778200 174940 3129200 2656000 2784800 2240000 1552400 1496900 1412900 2125600 7 7 4 7 7 7 7 7 7 7 7 1440500 2253000 14757 2355500 2313000 2405400 1780500 1138700 1061400 1119900 1725600 1341300 2102600 136660 2396500 2204800 2419000 1811600 1221100 1134800 1094500 1644100 5 5 2 5 5 5 5 5 5 5 5 390960 724040 5087 723920 471580 335900 422080 325290 347230 326050 504200 364060 675610 38283 732730 451230 365890 428410 331290 362090 318400 481530 2 2 2 2 2 2 2 2 2 2 2 121440000 89732000 31712000 21068 799 19360 109253;109254;109255;109256;109257 132460;132461;132462;132463;132464;132465;132466;132467 132467 8 VQYAPERPGPQPTAETTR Unmodified 1996.9967 0.99665254 1096 P49407;P49407-2 ARRB1 Beta-arrestin-1 yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 32.81 32.793 3 1.8481E-31 7808 20211116_3433_TMUAki_TMT10x_P_F5 192.6 163.65 163330 253330 635.5 365670 703130 530730 269860 267000 339750 243550 293250 152080 236810 21694 367570 663340 524560 298550 284080 340930 238830 284330 1 1 1 1 1 1 1 1 1 1 1 163330 253330 635.5 365670 703130 530730 269860 267000 339750 243550 293250 152080 236810 21694 367570 663340 524560 298550 284080 340930 238830 284330 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 67294000 67294000 0 21069 1096 19361 109258;109259 132468 132468 1 VQYTETEPYHNYR Unmodified 1698.7638 0.76379906 2115 Q86VM9 ZC3H18 Zinc finger CCCH domain-containing protein 18 yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 34.007 34.058 3 1.0749E-09 8145 20211116_3431_TMUAki_TMT10x_P_F4 135.81 125.27 2112000 3214400 4125.8 3452000 4449600 4136100 2504900 2264900 2568300 1948900 2628200 1965900 3000300 144310 3515100 4213500 4129300 2644500 2387800 2612200 1916400 2533500 4 4 1 4 4 4 4 4 4 4 4 1962400 2970900 4125.8 3173700 4298800 4009300 2356000 2102700 2378500 1807100 2416300 1826700 2772900 134030 3235900 4069000 3990100 2492100 2225300 2420100 1777100 2329800 3 3 1 3 3 3 3 3 3 3 3 149550 243490 0 278340 150850 126730 148870 162190 189810 141780 211880 139230 227330 10279 279230 144460 139260 152380 162500 192090 139310 203710 1 1 0 1 1 1 1 1 1 1 1 290650000 279460000 11186000 21070 2115 19362 109260;109261;109262 132469;132470;132471;132472 132470 4 VRAEVEQK Unmodified 957.52434 0.52434406 2152 Q8IX12;Q8IX12-2 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 0 0 0 1 By MS/MS 4 0 1 1 29.435 29.474 3 0.029726 6172 20211116_3431_TMUAki_TMT10x_P_F4 57.55 6.4903 401420 629550 0 599880 675650 697460 460910 311850 343840 331500 498680 373750 587320 34797 615530 642300 695840 475120 337120 360420 322950 476270 1 1 0 1 1 1 1 1 1 1 1 401420 629550 0 599880 675650 697460 460910 311850 343840 331500 498680 373750 587320 34797 615530 642300 695840 475120 337120 360420 322950 476270 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9928400 9928400 0 21071 2152 19363 109263 132473 132473 1 VRAPMVNPTLGVHEADLLK Oxidation (M) 2075.1197 0.11974457 1630 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 1 1 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 51.999 52.429 4 2.2229E-07 15134 20211116_3436_TMUAki_TMT10x_P_F8 101.64 74.829 15331000 25732000 187960 27041000 20462000 26576000 17455000 20553000 19462000 18780000 21993000 14275000 24016000 1422800 27487000 19549000 26967000 17925000 21148000 19802000 18414000 21138000 3 3 2 3 3 3 3 3 3 3 3 9195900 14383000 187960 15704000 14624000 20170000 11497000 10880000 10749000 10447000 12557000 8563700 13426000 1013600 15994000 13954000 20064000 11802000 11518000 11032000 10221000 12057000 2 2 2 2 2 2 2 2 2 2 2 6135100 11349000 0 11337000 5838200 6405300 5957800 9673700 8713800 8332500 9436300 5711600 10590000 409230 11492000 5594800 6902900 6122300 9630400 8769900 8193200 9080500 1 1 0 1 1 1 1 1 1 1 1 1910600000 1300800000 609760000 21072 1630 19364 109264;109265;109266 132474;132475;132476 132475 2181 3 VRDALTAEK Unmodified 1001.5506 0.55055881 2855 Q9HB71;Q9HB71-2 CACYBP Calcyclin-binding protein yes no 0 0 0 1 By MS/MS 5 0 1 1 33.242 33.42 3 0.00079899 6845 20211116_3444_TMUAki_TMT10x_S_F5 97.214 48.418 255320 469520 0 396400 302780 252280 323110 262160 274700 253860 365540 237710 437840 20439 407400 290740 266110 325180 265800 284800 248270 349810 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 255320 469520 0 396400 302780 252280 323110 262160 274700 253860 365540 237710 437840 20439 407400 290740 266110 325180 265800 284800 248270 349810 1 1 0 1 1 1 1 1 1 1 1 8341500 0 8341500 21073 2855 19365 109267 132477 132477 1 VRDGFCFR Unmodified 1055.4971 0.49708345 2081 Q7Z478 DHX29 ATP-dependent RNA helicase DHX29 yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 35.34 35.765 3 0.007367 8280 20211116_3436_TMUAki_TMT10x_P_F8 78.516 55.803 723600 1088000 30847 1209400 1360800 1415700 862280 901540 953360 953600 1062600 673960 1015600 94995 1228300 1293900 1418000 903540 944130 969770 929190 1021700 4 4 3 4 4 4 4 4 4 4 4 573160 850860 25928 950310 1221500 1273900 713970 699680 741830 729470 805720 533840 794310 78095 967290 1159800 1264900 751600 741250 755730 711210 775270 3 3 2 3 3 3 3 3 3 3 3 150440 237090 4918.7 259110 139280 141850 148320 201860 211540 224130 256870 140110 221320 16900 261020 134070 153080 151930 202880 214050 217980 246390 1 1 1 1 1 1 1 1 1 1 1 11830000 6708800 5121700 21074 2081 19366 109268;109269 132478;132479;132480;132481 132479 4 VRDKLNNLVLFDK Unmodified 1572.8988 0.8987764 1372 P62851 RPS25 40S ribosomal protein S25 yes yes 0 0 0 2 By MS/MS By matching 2 0 2 1 1 59.818 59.57 4 0.00031367 19546 20211116_3429_TMUAki_TMT10x_P_F2 85.837 38.636 1150600 1721300 0 1413500 1791100 3556000 1759800 3195200 2531500 2073600 1808400 1071000 1605000 66873 1495800 1714200 3482300 1810600 3233300 2516000 2071400 1766900 1 1 0 1 1 1 1 1 1 1 1 1150600 1721300 0 1413500 1791100 3556000 1759800 3195200 2531500 2073600 1808400 1071000 1605000 66873 1495800 1714200 3482300 1810600 3233300 2516000 2071400 1766900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 888390000 556550000 331840000 21075 1372 19367 109270;109271 132482 132482 1 VRDTYLDTQVVGQTGVIR Unmodified 2019.0749 0.074902863 78 O00267;O00267-2 SUPT5H Transcription elongation factor SPT5 yes no 0 0 0 1 By MS/MS 6 0 1 1 51.092 51.234 3 1.8463E-40 14309 20211116_3445_TMUAki_TMT10x_S_F6 188.9 166.54 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21076 78 19368 109272 132483 132483 1 VRDVFEAK Unmodified 962.51853 0.5185304 640 P12268 IMPDH2 Inosine-5'-monophosphate dehydrogenase 2 yes yes 0 0 0 1 By MS/MS 6 0 1 1 39.859 39.876 3 0.021302 9415 20211116_3434_TMUAki_TMT10x_P_F6 64.191 39.34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21077 640 19369 109273 132484 132484 1 VREAAEK Unmodified 801.43447 0.43446642 972 P38646 HSPA9 Stress-70 protein, mitochondrial yes yes 0 0 0 1 By MS/MS 3 0 1 1 26.987 26.694 3 0.046833 7800 20211116_3441_TMUAki_TMT10x_S_F3 57.047 12.653 147280 213030 2455.5 179350 160980 195020 154610 112740 110060 110630 160710 137150 198660 14691 185580 154340 195860 155780 118720 115710 108130 153460 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 147280 213030 2455.5 179350 160980 195020 154610 112740 110060 110630 160710 137150 198660 14691 185580 154340 195860 155780 118720 115710 108130 153460 1 1 1 1 1 1 1 1 1 1 1 4100800 0 4100800 21078 972 19370 109274 132485 132485 1 VREEEIEVDSR Unmodified 1359.663 0.66302238 1740 Q14978;Q14978-2;Q14978-3 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 0 0 0 1 By MS/MS By MS/MS 2.22 1.4 4 2 1 1 1 6 3 32.301 32.246 2;3 6.6138E-36 8803 20211116_3439_TMUAki_TMT10x_S_F1 278.99 202.77 6371600 10282000 98551 10082000 7746700 9209400 7050900 4952600 5638100 6521900 7299100 5933300 9593300 631210 10286000 7415900 9340100 7144700 5297300 5856500 6305000 6989700 7 7 4 7 7 7 7 7 7 7 7 4249400 6706900 73779 6525600 5676000 7292200 4784400 3228000 3784900 4633100 4734900 3957100 6257600 437790 6681400 5424200 7290200 4868700 3529100 3928000 4467100 4538200 4 4 2 4 4 4 4 4 4 4 4 2122200 3575000 24772 3556200 2070700 1917200 2266500 1724600 1853100 1888700 2564100 1976100 3335800 193420 3604700 1991600 2049900 2276000 1768100 1928600 1837900 2451500 3 3 2 3 3 3 3 3 3 3 3 3267500000 1618500000 1649100000 21079 1740 19371 109275;109276;109277;109278;109279;109280;109281;109282;109283 132486;132487;132488;132489;132490;132491;132492;132493 132492 8 VREEHQGENLDENLVPVAAAEGRPR Unmodified 2784.3903 0.39031678 3161 Q9UKV5 AMFR E3 ubiquitin-protein ligase AMFR yes yes 0 0 0 2 By MS/MS By matching 2.5 0.5 1 1 1 1 38.467 38.207 5 3.6533E-05 10816 20211116_3429_TMUAki_TMT10x_P_F2 67.989 54.258 607100 922300 0 983310 1159000 1063200 692510 605840 650000 552110 767210 565150 860830 42970 1000000 1098600 1067900 725520 637450 667290 541430 736480 1 1 0 1 1 1 1 1 1 1 1 607100 922300 0 983310 1159000 1063200 692510 605840 650000 552110 767210 565150 860830 42970 1000000 1098600 1067900 725520 637450 667290 541430 736480 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 77828000 42643000 35185000 21080 3161 19372 109284;109285 132494 132494 1 VREEIAEYQLR Unmodified 1404.7361 0.73612775 1100 P49454 CENPF Centromere protein F yes yes 0 0 0 1 By MS/MS 3.5 0.5 1 1 2 42.185 42.134 3 0.076287 11539 20211116_3442_TMUAki_TMT10x_S_F4 39.947 23.373 1773000 2907500 1063.8 2614400 1960100 1612100 2033600 2532600 2372400 1758100 2392000 1650800 2711900 150600 2672900 1881400 1724800 2069400 2505300 2399400 1749000 2306800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1773000 2907500 1063.8 2614400 1960100 1612100 2033600 2532600 2372400 1758100 2392000 1650800 2711900 150600 2672900 1881400 1724800 2069400 2505300 2399400 1749000 2306800 1 1 1 1 1 1 1 1 1 1 1 96345000 0 96345000 21081 1100 19373 109286;109287 132495 132495 1 VREEILAK Unmodified 956.56548 0.56548059 2772 Q9H0D6;Q9H0D6-2 XRN2 5'-3' exoribonuclease 2 yes no 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 37.309 37.384 3 0.0040161 8449 20211116_3444_TMUAki_TMT10x_S_F5 89.047 46.449 2150800 3292600 0 3355900 3212900 3357100 2416600 2342800 2443400 2088400 2755700 2002500 3072600 173930 3419100 3059400 3397200 2493800 2425600 2495700 2050100 2648600 2 2 0 2 2 2 2 2 2 2 2 1273800 1864800 0 1929900 2235400 2583800 1445400 1417900 1459600 1240100 1613700 1185900 1740300 108820 1974000 2122900 2565700 1507800 1495100 1489800 1218500 1551900 1 1 0 1 1 1 1 1 1 1 1 877040 1427800 0 1426000 977470 773330 971280 924930 983810 848280 1141900 816540 1332200 65106 1445200 936500 831490 985920 930460 1005900 831630 1096700 1 1 0 1 1 1 1 1 1 1 1 79655000 48005000 31650000 21082 2772 19374 109288;109289 132496;132497 132497 2 VREEVPLELVEAHVK Unmodified 1745.9676 0.96758424 2379 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 54.684 54.814 4 5.1818E-30 16852 20211116_3442_TMUAki_TMT10x_S_F4 210.1 182.76 23299000 36191000 310070 45113000 48549000 49090000 27802000 27893000 32504000 27233000 31761000 21695000 33804000 2547500 45452000 46046000 49288000 29431000 29410000 32835000 26624000 30662000 7 7 6 7 7 7 7 7 7 7 7 17214000 26227000 237320 33931000 43329000 43976000 22847000 19423000 25461000 20151000 24426000 16029000 24502000 1987300 34221000 41044000 43628000 24326000 21009000 25751000 19650000 23595000 4 4 3 4 4 4 4 4 4 4 4 6085100 9963900 72750 11182000 5219700 5114000 4955300 8470600 7043500 7082300 7335300 5666300 9301900 560180 11231000 5002700 5659600 5104900 8401300 7084600 6974100 7067100 3 3 3 3 3 3 3 3 3 3 3 3665500000 1823800000 1841700000 21083 2379 19375 109290;109291;109292;109293 132498;132499;132500;132501;132502;132503;132504 132503 7 VREEVPLELVEAHVKK Unmodified 1874.0625 0.062547262 2379 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 0 0 0 2 By MS/MS By MS/MS 6 0 2 1 1 51.826 51.943 5 1.8789E-07 14680 20211116_3445_TMUAki_TMT10x_S_F6 113.29 96.603 2636900 4631800 0 4725800 4064700 4734800 2855700 3720300 3752800 3568500 3754800 2454900 4322400 205440 4814600 3864900 4800100 2987700 3829200 3778600 3491500 3622100 2 2 0 2 2 2 2 2 2 2 2 1351300 2409700 0 2495400 2841500 3653000 1921700 1946500 1965000 1906600 2058400 1258000 2248900 111270 2557000 2700000 3611700 1998700 2064000 2000500 1863700 1982800 1 1 0 1 1 1 1 1 1 1 1 1285600 2222100 0 2230400 1223200 1081700 934070 1773800 1787800 1662000 1696400 1196900 2073500 94170 2257600 1164800 1188400 989010 1765200 1778200 1627800 1639300 1 1 0 1 1 1 1 1 1 1 1 556890000 288030000 268860000 21084 2379 19376 109294;109295 132505;132506 132506 2 VREEYPDR Unmodified 1062.5094 0.50942227 1640 Q13509;Q13509-2 TUBB3 Tubulin beta-3 chain yes no 0 0 0 1 By MS/MS By MS/MS 2.43 1.29 2 2 2 1 4 3 26.071 25.923 2;3 0.00024711 7873 20211116_3441_TMUAki_TMT10x_S_F3 156.83 115.94 2733900 4668200 34297 3644900 2959600 3353700 3035000 2450200 2627500 2500200 3467800 2545800 4352100 259540 3786300 2841600 3414200 3062000 2538300 2720700 2439700 3319300 7 7 5 7 7 7 7 7 7 7 7 1009500 1449200 26831 1253600 973800 1468000 891730 830250 804100 790840 1159700 940180 1351500 107050 1295900 933210 1468000 906100 875140 834480 774000 1107700 4 4 3 4 4 4 4 4 4 4 4 1724400 3219100 7466.4 2391200 1985800 1885700 2143300 1620000 1823400 1709300 2308100 1605600 3000600 152490 2490400 1908400 1946300 2155900 1663200 1886200 1665700 2211600 3 3 2 3 3 3 3 3 3 3 3 111760000 68781000 42979000 21085 1640 19377 109296;109297;109298;109299;109300;109301;109302 132507;132508;132509;132510;132511 132511 5 VREEYPDRIMNTFSVVPSPK Oxidation (M) 2379.1893 0.18928069 1640 Q13509;Q13509-2 TUBB3 Tubulin beta-3 chain yes no 0 0 1 2 By MS/MS 7 0 1 1 50.156 50.806 4 5.3646E-06 15586 20211116_3435_TMUAki_TMT10x_P_F7 82.265 66.844 1467800 2857500 34422 2365600 2231400 4016200 2111400 3513100 3373500 2310500 2364500 1367000 2664500 164470 2472700 2138600 3978300 2187000 3561200 3340900 2306100 2312200 1 1 1 1 1 1 1 1 1 1 1 1467800 2857500 34422 2365600 2231400 4016200 2111400 3513100 3373500 2310500 2364500 1367000 2664500 164470 2472700 2138600 3978300 2187000 3561200 3340900 2306100 2312200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 545000000 545000000 0 21086 1640 19378 109303 132512 132512 2204 1 VREFSITDVVPYPISLR Unmodified 1990.0888 0.088762013 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 1 By MS/MS By MS/MS 2.43 0.728 1 2 4 3 4 77.056 76.993 3 9.8357E-36 25214 20211116_3440_TMUAki_TMT10x_S_F2 202.53 171.3 27868000 42918000 196730 40941000 28135000 41123000 31135000 27203000 24162000 26941000 31523000 25948000 40040000 2353100 41909000 27055000 41569000 31209000 28353000 25147000 26323000 30181000 7 7 4 7 7 7 7 7 7 7 7 20885000 31539000 151540 29955000 18735000 33899000 22662000 20903000 18350000 20080000 23322000 19446000 29423000 1734500 30729000 18065000 33999000 22649000 21884000 19033000 19645000 22344000 5 5 3 5 5 5 5 5 5 5 5 6982700 11379000 45199 10987000 9400000 7224100 8472900 6300300 5811800 6861700 8200900 6501700 10616000 618660 11180000 8990300 7570700 8560500 6469100 6113700 6678400 7837100 2 2 1 2 2 2 2 2 2 2 2 12271000000 6778500000 5492100000 21087 916 19379 109304;109305;109306;109307;109308;109309;109310 132513;132514;132515;132516;132517;132518;132519;132520;132521 132518 9 VREFTMAEIEHFVDPSEKDHPK Oxidation (M) 2656.2592 0.25915117 1001 P41250 GARS Glycine--tRNA ligase yes yes 0 0 1 2 By MS/MS 6 0 1 1 55.553 55.642 6 0.02409 16125 20211116_3445_TMUAki_TMT10x_S_F6 41.084 31.114 1773900 3064000 9149.6 2872000 1970500 2236700 1678500 4096500 3785400 3707600 3376100 1651700 2858300 158350 2934000 1882700 2359600 1783100 4059600 3744300 3637100 3269400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1773900 3064000 9149.6 2872000 1970500 2236700 1678500 4096500 3785400 3707600 3376100 1651700 2858300 158350 2934000 1882700 2359600 1783100 4059600 3744300 3637100 3269400 1 1 1 1 1 1 1 1 1 1 1 316760000 0 316760000 21088 1001 19380 109311 132522 132522 1293 1 VRELFVQSEIFPLETPAFAIK Unmodified 2433.3308 0.3307832 1128 P49915 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 0 0 0 1 By MS/MS 2 0 1 1 79.477 79.453 3 3.5978E-07 26274 20211116_3440_TMUAki_TMT10x_S_F2 86.539 64.736 2257900 3561200 0 2950900 3136900 2321400 2449000 1963600 1857800 2192800 2767300 2102200 3320700 185020 3044100 2989500 2395700 2501800 2021300 1948200 2132200 2641400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2257900 3561200 0 2950900 3136900 2321400 2449000 1963600 1857800 2192800 2767300 2102200 3320700 185020 3044100 2989500 2395700 2501800 2021300 1948200 2132200 2641400 1 1 0 1 1 1 1 1 1 1 1 453380000 0 453380000 21089 1128 19381 109312 132523 132523 1 VRELISDNQYR Unmodified 1391.7157 0.71572665 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 1 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 38.691 38.739 3 3.6275E-08 8763 20211116_3434_TMUAki_TMT10x_P_F6 142.12 115.6 3443600 5458900 41082 6941100 6614800 5465200 3708300 3712200 4202700 3438700 5203600 3206600 5099300 368200 6954300 6272000 5619200 3928700 3854600 4289400 3369600 4988700 3 3 3 3 3 3 3 3 3 3 3 1840500 3073400 40428 3572300 5275600 4274600 2557200 2223600 2472600 1936400 2624400 1714000 2869700 238380 3619600 4992600 4265300 2733400 2355700 2524500 1903000 2526900 2 2 2 2 2 2 2 2 2 2 2 1603100 2385500 653.45 3368800 1339200 1190600 1151100 1488600 1730100 1502300 2579200 1492600 2229600 129820 3334700 1279400 1353900 1195400 1498800 1764900 1466600 2461800 1 1 1 1 1 1 1 1 1 1 1 368300000 249790000 118510000 21090 799 19382 109313;109314;109315 132524;132525;132526 132525 3 VREQLGPVTQEFWDNLEK Unmodified 2187.096 0.096032235 42 CON__P15497 yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 73.341 73.386 3 8.1368E-06 24300 20211116_3433_TMUAki_TMT10x_P_F5 88.781 71.187 + 2347100 4253300 82071 3480400 2751600 4723800 3413000 2319200 2378300 2611800 3343800 2186000 3965900 276740 3623700 2659900 4681600 3395300 2488100 2499000 2538800 3195700 1 1 1 1 1 1 1 1 1 1 1 2347100 4253300 82071 3480400 2751600 4723800 3413000 2319200 2378300 2611800 3343800 2186000 3965900 276740 3623700 2659900 4681600 3395300 2488100 2499000 2538800 3195700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1169700000 1169700000 0 21091 42 19383 109316;109317 132527 132527 1 VREVSQPDWTPPPEVTLVLTK Unmodified 2390.2846 0.28456129 654 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 1 By MS/MS By MS/MS 7.33 0.471 4 2 2 4 74.364 74.437 3;4 8.7984E-11 23613 20211116_3447_TMUAki_TMT10x_S_F8 119.27 105.25 32336000 52318000 382730 50840000 35697000 38419000 38132000 20239000 19698000 23785000 34844000 30110000 48812000 2959000 51784000 34304000 39496000 37981000 21601000 21383000 23083000 33143000 10 10 6 10 10 10 10 10 10 10 10 15461000 25209000 240450 23846000 15488000 23530000 18343000 9820200 9274500 11373000 15989000 14398000 23518000 1472600 24419000 14935000 23683000 18176000 10723000 10070000 11044000 15216000 4 4 3 4 4 4 4 4 4 4 4 16874000 27109000 142280 26994000 20209000 14889000 19790000 10419000 10423000 12412000 18855000 15712000 25295000 1486400 27365000 19370000 15814000 19806000 10879000 11313000 12040000 17928000 6 6 3 6 6 6 6 6 6 6 6 6278300000 2317000000 3961200000 21092 654 19384 109318;109319;109320;109321;109322;109323 132528;132529;132530;132531;132532;132533;132534;132535;132536;132537 132537 10 VREWYGYHFPELVK Unmodified 1821.9202 0.92024012 103 O00567 NOP56 Nucleolar protein 56 yes yes 0 0 0 1 By MS/MS 2 0 1 1 61.17 60.9 4 0.010531 20050 20211116_3429_TMUAki_TMT10x_P_F2 58.831 41.55 2354000 3398000 29237 3786100 2778300 4247600 3208800 1885100 2222200 2178100 2496600 2192100 3172200 228360 3842000 2676500 4245600 3201800 2044600 2313600 2115200 2399900 1 1 1 1 1 1 1 1 1 1 1 2354000 3398000 29237 3786100 2778300 4247600 3208800 1885100 2222200 2178100 2496600 2192100 3172200 228360 3842000 2676500 4245600 3201800 2044600 2313600 2115200 2399900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 319010000 319010000 0 21093 103 19385 109324 132538 132538 1 VREYELR Unmodified 963.51378 0.51377937 1383 P62913;P62913-2 RPL11 60S ribosomal protein L11 yes no 0 0 0 1 By MS/MS By MS/MS 4 0.816 1 1 1 2 1 31.138 31.044 3 0.0030485 6792 20211116_3431_TMUAki_TMT10x_P_F4 106.91 54.274 2191200 3440900 23784 3427300 2953000 2752400 2389800 1718400 1763400 1692700 2589100 2040400 3210700 214500 3487200 2818700 2822400 2434200 1798600 1850700 1654200 2472000 4 4 4 4 4 4 4 4 4 4 4 1028300 1582000 19704 1529500 1799100 1752500 1111400 856050 860940 839940 1217800 957570 1476000 114410 1567400 1709000 1751400 1155500 915130 899480 820990 1163700 2 2 2 2 2 2 2 2 2 2 2 1163000 1858900 4080 1897700 1153900 999970 1278500 862380 902450 852750 1371300 1082900 1734700 100090 1919800 1109800 1071000 1278700 883460 951170 833240 1308300 2 2 2 2 2 2 2 2 2 2 2 266890000 135070000 131830000 21094 1383 19386 109325;109326;109327 132539;132540;132541;132542 132539 4 VRFQEAEERPK Unmodified 1387.7208 0.72081203 2345 Q92598;Q92598-2;Q92598-3;Q92598-4 HSPH1 Heat shock protein 105 kDa yes no 0 0 0 2 By MS/MS 4.5 0.5 2 2 4 31.275 31.26 3;4 2.23E-06 6872 20211116_3431_TMUAki_TMT10x_P_F4 125.54 102.17 4964000 7183500 30861 8409900 9340800 7184800 4830400 2876000 4507200 3756000 5515600 4622200 6707600 496770 8474500 8844600 7298100 5125500 3167900 4635300 3632000 5289500 4 4 3 4 4 4 4 4 4 4 4 4964000 7183500 30861 8409900 9340800 7184800 4830400 2876000 4507200 3756000 5515600 4622200 6707600 496770 8474500 8844600 7298100 5125500 3167900 4635300 3632000 5289500 4 4 3 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 369320000 369320000 0 21095 2345 19387 109328;109329;109330;109331 132543;132544;132545 132543 3 VRGDINVLLCGDPGTAK Unmodified 1783.9251 0.9250675 1114 P49736 MCM2 DNA replication licensing factor MCM2 yes yes 0 0 0 1 By MS/MS 7 0 1 1 55.782 56.308 3 0.00059885 18356 20211116_3446_TMUAki_TMT10x_S_F7 64.346 48.457 8447700 15882000 31739 15023000 12082000 11030000 8297000 17996000 16668000 15065000 14295000 7865800 14817000 780850 15327000 11491000 11639000 8873000 17857000 16506000 14834000 13863000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8447700 15882000 31739 15023000 12082000 11030000 8297000 17996000 16668000 15065000 14295000 7865800 14817000 780850 15327000 11491000 11639000 8873000 17857000 16506000 14834000 13863000 1 1 1 1 1 1 1 1 1 1 1 1245800000 0 1245800000 21096 1114 19388 109332 132546 132546 1 VRGGVPLVK Unmodified 923.59164 0.59163576 2588 Q99613;Q99613-2;B5ME19 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 35.712 35.58 3 0.00074286 11623 20211116_3441_TMUAki_TMT10x_S_F3 98.582 82.249 2784400 4399800 1719.5 4373600 3462100 3446100 2786200 2382100 2532300 2469700 3374000 2592400 4105400 226100 4449700 3301700 3544000 2853700 2478200 2617200 2408400 3228700 3 3 1 3 3 3 3 3 3 3 3 1467000 2232200 0 2277000 2075200 2420600 1468800 1174200 1256400 1263500 1786300 1365900 2083000 124750 2321900 1974200 2429100 1515000 1259500 1306300 1230400 1706700 1 1 0 1 1 1 1 1 1 1 1 1317400 2167600 1719.5 2096600 1386900 1025500 1317400 1207800 1275900 1206200 1587800 1226500 2022300 101350 2127800 1327500 1114900 1338700 1218800 1310900 1178100 1522000 2 2 1 2 2 2 2 2 2 2 2 144300000 71448000 72854000 21097 2588 19389 109333;109334;109335 132547;132548;132549 132549 3 VRGLPWSCSADEVQR Unmodified 1758.8472 0.84715153 894 P31943 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 45.059 45.284 3 2.676E-53 13866 20211116_3446_TMUAki_TMT10x_S_F7 296.27 265.27 8615200 14710000 109050 17962000 14451000 12317000 9400700 9866400 10115000 8681400 12528000 8022200 13739000 865810 18010000 13733000 12841000 9821700 10120000 10345000 8527500 12010000 7 7 5 7 7 7 7 7 7 7 7 4515300 7358400 35507 9229000 10202000 9526600 6601500 4854900 5123900 4312800 6309800 4204200 6873200 456810 9287400 9691700 9581700 6838700 5155600 5319400 4234400 6050100 3 3 2 3 3 3 3 3 3 3 3 4099900 7352000 73544 8732900 4248800 2790400 2799200 5011500 4991500 4368600 6217800 3818000 6865400 409000 8722600 4041800 3259100 2983000 4964000 5025600 4293100 5960200 4 4 3 4 4 4 4 4 4 4 4 2856300000 1749000000 1107300000 21098 894 19390 109336;109337;109338;109339;109340;109341 132550;132551;132552;132553;132554;132555;132556 132554 7 VRIDQYQGADAVGLEEK Unmodified 1889.9483 0.94830537 213 O43396 TXNL1 Thioredoxin-like protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.25 0.433 3 1 2 2 51.574 51.72 3 9.1963E-11 14221 20211116_3444_TMUAki_TMT10x_S_F5 125.18 105.85 8459300 15765000 0 18425000 7067300 6573700 6418200 15221000 16185000 12012000 14595000 7875700 14721000 588600 18431000 6754100 7622100 6846500 14943000 15982000 11864000 14129000 3 3 0 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8459300 15765000 0 18425000 7067300 6573700 6418200 15221000 16185000 12012000 14595000 7875700 14721000 588600 18431000 6754100 7622100 6846500 14943000 15982000 11864000 14129000 3 3 0 3 3 3 3 3 3 3 3 843860000 0 843860000 21099 213 19391 109342;109343;109344;109345 132557;132558;132559;132560;132561 132560 5 VRIEGDNENKLPR Unmodified 1538.8165 0.81650333 1148 P51114;P51114-2;P51114-3 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 0 0 0 2 By MS/MS 4.5 0.5 1 1 2 33.82 33.805 4 1.2262E-11 8162 20211116_3433_TMUAki_TMT10x_P_F5 151.99 95.789 741740 1173200 3150.5 1222300 1943000 1433700 1009500 682100 689590 619280 957220 690650 1094900 81256 1246700 1839800 1430700 1062900 729560 725040 607410 915110 1 1 1 1 1 1 1 1 1 1 1 741740 1173200 3150.5 1222300 1943000 1433700 1009500 682100 689590 619280 957220 690650 1094900 81256 1246700 1839800 1430700 1062900 729560 725040 607410 915110 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 146970000 146970000 0 21100 1148 19392 109346;109347 132562 132562 1 VRIQETQAELPR Unmodified 1438.7892 0.78922595 1716 Q14566 MCM6 DNA replication licensing factor MCM6 yes yes 0 0 0 1 By MS/MS 5 0 1 1 35.587 35.762 3 1.1844E-08 7844 20211116_3444_TMUAki_TMT10x_S_F5 140.82 119.27 351690 547900 0 654990 378310 269130 322010 417280 442120 345180 543280 327440 511650 27125 654860 361170 301300 333290 414630 448120 340090 520950 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 351690 547900 0 654990 378310 269130 322010 417280 442120 345180 543280 327440 511650 27125 654860 361170 301300 333290 414630 448120 340090 520950 1 1 0 1 1 1 1 1 1 1 1 24829000 0 24829000 21101 1716 19393 109348 132563 132563 1 VRIQTQPGYANTLR Unmodified 1615.8794 0.87943794 1466 Q00325-2;Q00325 SLC25A3 Phosphate carrier protein, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 36.863 36.624 3 1.6238E-19 11631 20211116_3441_TMUAki_TMT10x_S_F3 176.25 147.44 806330 1115500 0 1456900 1312000 1135400 750630 881280 1132900 775220 1091200 750700 1042100 64996 1457300 1243300 1170800 802580 905670 1134300 761490 1053900 2 2 0 2 2 2 2 2 2 2 2 453690 605470 0 838040 992500 899040 508690 520550 663750 442710 642790 422360 565840 36702 839420 938940 903610 546090 546030 667720 435580 620730 1 1 0 1 1 1 1 1 1 1 1 352640 509980 0 618830 319510 236410 241930 360730 469150 332510 448390 328340 476270 28294 617900 304380 267220 256490 359640 466600 325910 433180 1 1 0 1 1 1 1 1 1 1 1 85643000 51185000 34458000 21102 1466 19394 109349;109350 132564;132565 132565 2 VRKPEDPEECPEEVYDPR Unmodified 2243.0165 0.016461285 2761 Q9GZU8 FAM192A Protein FAM192A yes yes 0 0 0 2 By MS/MS 3 1 1 1 2 39.186 39.078 4 1.2647E-05 11143 20211116_3429_TMUAki_TMT10x_P_F2 88.486 75.166 3469800 5537500 101360 6592300 9253400 9037200 5214800 4664200 4829200 3700900 5140000 3231500 5171100 456920 6687300 8776800 8957400 5488800 4934100 4940700 3654100 4948800 5 5 4 5 5 5 5 5 5 5 5 3469800 5537500 101360 6592300 9253400 9037200 5214800 4664200 4829200 3700900 5140000 3231500 5171100 456920 6687300 8776800 8957400 5488800 4934100 4940700 3654100 4948800 5 5 4 5 5 5 5 5 5 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 265690000 265690000 0 21103 2761 19395 109351;109352 132566;132567;132568;132569;132570 132567 5 VRLDDDDEGVPSSALR Unmodified 1742.8435 0.84350594 1470 Q00535;Q00535-2 CDK5 Cyclin-dependent-like kinase 5 yes no 0 0 0 1 By MS/MS 2 0 1 1 43.777 43.484 3 2.5674E-05 12985 20211116_3429_TMUAki_TMT10x_P_F2 93.152 61.513 768240 1134500 0 1437200 2063600 2183200 1137700 1034700 1068400 856000 1077100 715210 1059700 69263 1455900 1954600 2152300 1200300 1104600 1090300 843370 1038800 1 1 0 1 1 1 1 1 1 1 1 768240 1134500 0 1437200 2063600 2183200 1137700 1034700 1068400 856000 1077100 715210 1059700 69263 1455900 1954600 2152300 1200300 1104600 1090300 843370 1038800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 79398000 79398000 0 21104 1470 19396 109353 132571 132571 1 VRLGDVISIQPCPDVK Unmodified 1794.9662 0.96620404 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 1 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 60.612 60.904 3 1.7209E-05 19745 20211116_3435_TMUAki_TMT10x_P_F7 96.163 74.606 42081000 72015000 614580 68749000 58866000 77371000 51951000 61567000 52981000 53832000 58658000 39184000 67185000 4108600 70495000 56295000 77934000 53090000 63164000 54055000 52894000 56409000 8 8 6 8 8 8 8 8 8 8 8 29859000 50836000 603240 48971000 42217000 66255000 40841000 44706000 38663000 38658000 42101000 27806000 47428000 3195100 50349000 40481000 65946000 41431000 46361000 39551000 38004000 40507000 6 6 5 6 6 6 6 6 6 6 6 12222000 21179000 11344 19778000 16649000 11116000 11110000 16861000 14317000 15175000 16557000 11378000 19757000 913530 20146000 15814000 11988000 11659000 16803000 14505000 14890000 15902000 2 2 1 2 2 2 2 2 2 2 2 6573200000 3261500000 3311700000 21105 1235 19397 109354;109355;109356;109357;109358 132572;132573;132574;132575;132576;132577;132578;132579 132575 8 VRLTLPHSIR Unmodified 1190.7248 0.7247752 377 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 0 0 0 1 By MS/MS 5 0 1 1 36.965 37.127 4 0.097271 8459 20211116_3444_TMUAki_TMT10x_S_F5 39.657 27.041 94130 139840 0 131580 116990 73789 80076 169880 141990 131400 138980 87626 130460 5790.8 133950 111100 80895 85072 166720 141640 129910 134170 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 94130 139840 0 131580 116990 73789 80076 169880 141990 131400 138980 87626 130460 5790.8 133950 111100 80895 85072 166720 141640 129910 134170 1 1 0 1 1 1 1 1 1 1 1 38134000 0 38134000 21106 377 19398 109359 132580 132580 1 VRPASTGGLSLLPPPPGGK Unmodified 1800.0258 0.025767826 2981 Q9NVZ3;Q9NVZ3-4;Q9NVZ3-2 NECAP2 Adaptin ear-binding coat-associated protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 53.295 53.402 3 0.00014843 15728 20211116_3431_TMUAki_TMT10x_P_F4 71.558 50.605 8096800 13621000 239710 15114000 11997000 14225000 9759900 12005000 11298000 10240000 11541000 7540700 12715000 949310 15300000 11462000 14496000 10064000 12265000 11435000 10073000 11125000 4 4 4 4 4 4 4 4 4 4 4 4946600 7738100 178940 8478400 8127400 10583000 6532400 6686400 6391800 5430500 6492100 4607100 7223200 621420 8628500 7763700 10564000 6705100 6957300 6512300 5355500 6259600 2 2 2 2 2 2 2 2 2 2 2 3150200 5882900 60772 6635500 3869700 3641500 3227500 5318700 4905900 4809100 5048700 2933600 5492200 327890 6671300 3698000 3932100 3359300 5307800 4922500 4717800 4865900 2 2 2 2 2 2 2 2 2 2 2 704370000 460470000 243900000 21107 2981 19399 109360;109361 132581;132582;132583;132584 132581 4 VRPCVVYGGADIGQQIR Unmodified 1886.9785 0.97850006 104 O00571;O00571-2;O15523;O15523-2 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 0 1 By MS/MS By MS/MS 5 3.29 2 1 2 2 3 45.566 45.639 3 2.4638E-60 11837 20211116_3447_TMUAki_TMT10x_S_F8 281.07 254.1 31249000 49101000 346420 57752000 44155000 44085000 33922000 35801000 29060000 27766000 37590000 29097000 45849000 2308200 58101000 42087000 45568000 34793000 36577000 30079000 27449000 35998000 7 7 2 7 7 7 7 7 7 7 7 20314000 30449000 301880 36159000 34604000 35815000 26252000 22606000 18088000 16900000 22918000 18916000 28434000 1569900 36480000 32985000 36210000 26813000 23480000 18930000 16740000 21959000 3 3 1 3 3 3 3 3 3 3 3 10935000 18652000 44540 21593000 9551800 8270800 7669600 13194000 10972000 10866000 14672000 10181000 17415000 738220 21621000 9101700 9358100 7980300 13097000 11149000 10709000 14039000 4 4 1 4 4 4 4 4 4 4 4 15822000000 9914900000 5906900000 21108 104 19400 109362;109363;109364;109365;109366 132585;132586;132587;132588;132589;132590;132591 132591 7 VRPGFCFHLCSR Unmodified 1534.7286 0.72855672 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 39.762 39.846 4 3.3231E-09 9541 20211116_3444_TMUAki_TMT10x_S_F5 153.75 134.65 1249900 2223700 4139.5 2436700 2519400 2196200 1330600 1877800 1552300 1404300 1921600 1163700 2075700 113810 2467200 2385400 2245000 1418700 1911100 1582600 1391000 1842300 5 5 3 5 5 5 5 5 5 5 5 603500 1063400 1276.7 1143600 1626400 1746000 867520 956270 807730 729720 928650 561930 992580 65550 1170000 1540400 1723800 917790 1005300 828640 722010 892090 2 2 2 2 2 2 2 2 2 2 2 646420 1160200 2862.8 1293100 893060 450200 463060 921570 744540 674540 992970 601810 1083100 48257 1297200 844920 521220 500900 905810 753940 668960 950190 3 3 1 3 3 3 3 3 3 3 3 232070000 172490000 59577000 21109 1546 19401 109367;109368;109369;109370 132592;132593;132594;132595;132596 132594 5 VRPLLPSELER Unmodified 1307.7561 0.75613491 415 O95235 KIF20A Kinesin-like protein KIF20A yes yes 0 0 0 1 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 45.124 45.379 3 2.8452E-08 11886 20211116_3445_TMUAki_TMT10x_S_F6 146.08 113.81 4623600 7776400 7141.5 9384000 5876100 5815600 4261600 5192700 5415000 4883800 6200300 4305000 7262200 397370 9406300 5593500 6130600 4442800 5301800 5486200 4782500 5956900 3 3 2 3 3 3 3 3 3 3 3 1621400 2477700 3681 3235600 3413900 3635700 2113900 1797500 2045900 1745600 2070600 1509700 2314800 162960 3253300 3240900 3637800 2210100 1918800 2085200 1707000 1996700 1 1 1 1 1 1 1 1 1 1 1 3002200 5298700 3460.5 6148400 2462200 2179800 2147700 3395200 3369000 3138200 4129700 2795300 4947400 234420 6153000 2352500 2492800 2232700 3383000 3401000 3075500 3960200 2 2 1 2 2 2 2 2 2 2 2 924400000 440060000 484340000 21110 415 19402 109371;109372;109373 132597;132598;132599 132598 3 VRPVLPGEPTPPPGLLLFPSGPGGPSDPPTR Unmodified 3100.671 0.6709553 2700 Q9BW19 KIFC1 Kinesin-like protein KIFC1 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 76.728 76.67 4 2.1889E-06 26391 20211116_3429_TMUAki_TMT10x_P_F2 72.728 69.308 5319300 9445900 115570 7779700 6415900 10747000 7993400 8686100 7906400 9077600 8795200 4953600 8807800 564070 8098600 6198500 10719000 8022900 8947100 8078700 8849600 8456900 2 2 2 2 2 2 2 2 2 2 2 3328200 5620700 102320 4388900 3300300 7714100 4491600 5383000 5065700 5870400 5627800 3099600 5240100 370900 4614100 3200700 7601100 4511500 5605300 5148300 5713300 5411500 1 1 1 1 1 1 1 1 1 1 1 1991100 3825200 13250 3390800 3115600 3032500 3501800 3303100 2840600 3207200 3167400 1854000 3567700 193170 3484500 2997900 3117500 3511400 3341800 2930400 3136300 3045400 1 1 1 1 1 1 1 1 1 1 1 3411600000 1813100000 1598500000 21111 2700 19403 109374;109375 132600;132601 132600 2 VRPYQVELVR Unmodified 1257.7194 0.71935547 2847 Q9H9T3;Q9H9T3-4;Q9H9T3-5;Q9H9T3-2 ELP3 Elongator complex protein 3 yes no 0 0 0 1 By MS/MS 8 0 1 1 38.14 38.413 3 7.928E-05 9426 20211116_3436_TMUAki_TMT10x_P_F8 120.04 85.149 480740 707970 6803 778360 903320 944400 593040 528640 538060 497310 662080 447670 660880 52115 791570 858760 942510 616070 557530 554190 486990 634850 1 1 1 1 1 1 1 1 1 1 1 480740 707970 6803 778360 903320 944400 593040 528640 538060 497310 662080 447670 660880 52115 791570 858760 942510 616070 557530 554190 486990 634850 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32150000 32150000 0 21112 2847 19404 109376 132602 132602 1 VRTDITYPAGFMDVISIDK Oxidation (M) 2156.0824 0.082356006 1362 P62701 RPS4X 40S ribosomal protein S4, X isoform yes yes 0 0 1 1 By MS/MS By MS/MS 6.57 0.728 1 1 5 3 4 72.514 72.671 3;4 4.0543E-12 23581 20211116_3435_TMUAki_TMT10x_P_F7 126.8 111.21 47701000 85301000 476450 77391000 57949000 70023000 55494000 61392000 58763000 59427000 67277000 44417000 79565000 4458900 79400000 55526000 71595000 56519000 62796000 59940000 58121000 64636000 11 11 8 11 11 11 11 11 11 11 11 16640000 29716000 233980 27797000 17124000 33870000 19583000 20069000 20570000 20838000 22259000 15495000 27721000 1566300 28584000 16493000 33820000 19766000 21124000 20943000 20320000 21421000 4 4 2 4 4 4 4 4 4 4 4 31061000 55584000 242470 49595000 40825000 36153000 35911000 41323000 38193000 38589000 45018000 28922000 51844000 2892700 50817000 39033000 37775000 36753000 41672000 38997000 37801000 43216000 7 7 6 7 7 7 7 7 7 7 7 8884200000 3616000000 5268100000 21113 1362 19405 109377;109378;109379;109380;109381;109382;109383 132603;132604;132605;132606;132607;132608;132609;132610;132611;132612;132613;132614 132604 1827 12 VRTDITYPAGFMDVISIDK Unmodified 2140.0874 0.087441384 1362 P62701 RPS4X 40S ribosomal protein S4, X isoform yes yes 0 0 0 1 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 77.376 77.423 3 1.0287E-31 25346 20211116_3436_TMUAki_TMT10x_P_F8 192.6 176.07 27106000 42664000 162170 47928000 28024000 33482000 29777000 15595000 15551000 17676000 27354000 25239000 39830000 2304800 48307000 26917000 34598000 29672000 16821000 16861000 17178000 26022000 3 3 2 3 3 3 3 3 3 3 3 19047000 29348000 83915 33518000 18975000 26577000 20513000 10809000 10460000 12248000 18759000 17735000 27400000 1549900 33796000 18231000 27149000 20416000 11829000 11376000 11903000 17840000 2 2 1 2 2 2 2 2 2 2 2 8058700 13317000 78252 14410000 9048000 6904600 9264300 4785600 5090300 5428100 8595000 7504000 12430000 754910 14511000 8685900 7449300 9256700 4991800 5485500 5274900 8182800 1 1 1 1 1 1 1 1 1 1 1 3193400000 2119400000 1074000000 21114 1362 19405 109384;109385;109386 132615;132616;132617 132616 3 VRVDSTAK Unmodified 874.48723 0.48723027 1429 P78371;P78371-2 CCT2 T-complex protein 1 subunit beta yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 29.094 29.081 3 0.039657 6355 20211116_3433_TMUAki_TMT10x_P_F5 53.597 29.625 789340 1230700 4055.2 1028300 887370 1334300 772230 685930 717300 698560 887040 734960 1147700 67652 1067900 848010 1325800 787630 730510 738160 681730 850440 2 2 1 2 2 2 2 2 2 2 2 789340 1230700 4055.2 1028300 887370 1334300 772230 685930 717300 698560 887040 734960 1147700 67652 1067900 848010 1325800 787630 730510 738160 681730 850440 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17646000 17646000 0 21115 1429 19406 109387;109388 132618 132618 1 VRVELSNGEK Unmodified 1129.6091 0.60913632 1457 P84103;P84103-2 SRSF3 Serine/arginine-rich splicing factor 3 yes no 0 0 0 1 By MS/MS By MS/MS 3.89 1.52 1 1 1 2 3 1 5 4 34.298 34.274 2;3 1.0016E-09 8396 20211116_3433_TMUAki_TMT10x_P_F5 182.92 133.5 29343000 42386000 402340 47018000 26696000 37731000 27515000 19846000 28819000 23569000 30650000 27322000 39568000 2470900 47500000 25623000 38608000 27907000 21192000 29327000 22865000 29510000 10 10 6 10 10 10 10 10 10 10 10 19472000 27681000 384330 30752000 18670000 28491000 18057000 12985000 19121000 15628000 19811000 18133000 25841000 1914200 31121000 17906000 28816000 18381000 14064000 19430000 15154000 19090000 5 5 3 5 5 5 5 5 5 5 5 9871500 14705000 18010 16266000 8026200 9239400 9458300 6860600 9698400 7940600 10839000 9189400 13727000 556640 16379000 7716600 9792500 9526500 7127700 9896400 7710700 10420000 5 5 3 5 5 5 5 5 5 5 5 4160500000 3161100000 999360000 21116 1457 19407 109389;109390;109391;109392;109393;109394;109395;109396;109397 132619;132620;132621;132622;132623;132624;132625;132626;132627;132628 132622 10 VRVELSNGEKR Unmodified 1285.7102 0.71024735 1457 P84103;P84103-2 SRSF3 Serine/arginine-rich splicing factor 3 yes no 0 0 0 2 By MS/MS By MS/MS 4.83 2.23 2 1 1 2 2 4 8 4 28.367 28.456 3;4 3.0939E-14 7002 20211116_3433_TMUAki_TMT10x_P_F5 184.31 139.15 12707000 20258000 33303 17261000 16931000 24369000 14406000 14710000 14064000 14374000 16191000 11831000 18892000 1131700 17927000 16173000 24170000 14734000 15433000 14398000 14052000 15553000 11 11 4 11 11 11 11 11 11 11 11 12146000 19380000 33303 16462000 16360000 23717000 13786000 13956000 13307000 13692000 15460000 11309000 18072000 1087300 17108000 15623000 23495000 14103000 14674000 13635000 13384000 14847000 9 9 4 9 9 9 9 9 9 9 9 560420 878870 0 798960 571490 651880 619940 754000 757320 681230 731110 521810 819780 44382 818520 549180 675460 630550 759280 763500 668320 706090 2 2 0 2 2 2 2 2 2 2 2 1316900000 878340000 438600000 21117 1457 19408 109398;109399;109400;109401;109402;109403;109404;109405;109406;109407;109408;109409 132629;132630;132631;132632;132633;132634;132635;132636;132637;132638;132639 132634 11 VRVELSTGMPR Oxidation (M) 1259.6656 0.66560534 1855 Q16629;Q16629-3;Q16629-2;Q16629-4 SRSF7 Serine/arginine-rich splicing factor 7 yes no 0 0 1 1 By MS/MS By MS/MS 4.12 2.39 3 2 2 2 3 1 3 7 9 32.576 32.643 2;3 0.00027338 7670 20211116_3431_TMUAki_TMT10x_P_F4 90.434 59.61 8748000 13899000 60188 13400000 12656000 14048000 10008000 11587000 11882000 10472000 11326000 8145000 12967000 751990 13715000 12067000 14216000 10348000 11872000 11986000 10274000 10943000 14 14 7 14 14 14 14 14 14 14 14 4648900 7185000 31032 6944000 7992700 9520100 5140200 6252500 6604500 5731500 5987400 4328600 6703400 438790 7139600 7592500 9466100 5408400 6506400 6632900 5619100 5794900 6 6 2 6 6 6 6 6 6 6 6 4099100 6713600 29156 6456200 4663400 4528200 4868000 5334300 5277600 4741000 5338900 3816400 6263600 313210 6575700 4474400 4750000 4939800 5365100 5353300 4654700 5148300 8 8 5 8 8 8 8 8 8 8 8 2734700000 1855700000 879000000 21118 1855 19409 109410;109411;109412;109413;109414;109415;109416;109417;109418;109419;109420;109421;109422;109423;109424;109425 132640;132641;132642;132643;132644;132645;132646;132647;132648;132649;132650;132651;132652;132653 132643 2469 14 VRVELSTGMPR Unmodified 1243.6707 0.67069072 1855 Q16629;Q16629-3;Q16629-2;Q16629-4 SRSF7 Serine/arginine-rich splicing factor 7 yes no 0 0 0 1 By MS/MS By MS/MS 4.07 2.22 2 2 1 5 1 1 2 4 10 38.658 38.742 3 1.3223E-07 11228 20211116_3429_TMUAki_TMT10x_P_F2 140 94.172 19480000 31659000 196110 38188000 22695000 18076000 19195000 18962000 22748000 17929000 25691000 18139000 29566000 1838100 38196000 21684000 19675000 19763000 19203000 23091000 17553000 24692000 11 11 10 11 11 11 11 11 11 11 11 4399200 6474300 26220 7489500 9101200 8079800 5772400 4193600 4466100 3751600 5732900 4096300 6045000 450340 7577700 8644200 8107500 5988800 4446600 4645600 3682200 5491100 4 4 3 4 4 4 4 4 4 4 4 15081000 25185000 169890 30699000 13593000 9995700 13422000 14768000 18282000 14178000 19958000 14043000 23521000 1387800 30619000 13040000 11567000 13774000 14757000 18445000 13871000 19201000 7 7 7 7 7 7 7 7 7 7 7 677640000 342980000 334660000 21119 1855 19409 109426;109427;109428;109429;109430;109431;109432;109433;109434;109435;109436;109437;109438;109439 132654;132655;132656;132657;132658;132659;132660;132661;132662;132663;132664;132665;132666 132655 13 VRVQTGEEGMPLSTIR Oxidation (M) 1787.92 0.91998213 1469 Q00534 CDK6 Cyclin-dependent kinase 6 yes yes 0 0 1 1 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 37.283 37.388 3 9.3836E-08 8451 20211116_3444_TMUAki_TMT10x_S_F5 117.13 100.19 1052100 1656600 14310 2055500 2081200 2073600 1243000 1613500 1803300 1402200 1771600 979710 1547300 112530 2069000 1975100 2100900 1322000 1657400 1808900 1378200 1709900 3 3 2 3 3 3 3 3 3 3 3 712370 1033000 10591 1365900 1801600 1828600 1000900 1089900 1205700 944030 1211900 663360 965150 84186 1376900 1708000 1817700 1063500 1141100 1217900 928000 1168900 1 1 1 1 1 1 1 1 1 1 1 339750 623630 3719.8 689580 279520 244970 242110 523600 597570 458170 559670 316350 582160 28344 692180 267150 283240 258540 516340 591020 450170 541070 2 2 1 2 2 2 2 2 2 2 2 204410000 130520000 73889000 21120 1469 19410 109440;109441;109442 132667;132668 132668 1971 2 VRVTELEDEVR Unmodified 1343.7045 0.70449327 2682 Q9BV38 WDR18 WD repeat-containing protein 18 yes yes 0 0 0 1 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 41.641 41.54 3 2.6515E-11 12339 20211116_3429_TMUAki_TMT10x_P_F2 168.82 141.2 5595200 8144000 290630 9756000 8503100 7966400 6494100 6625900 6581000 5531900 8107300 5211800 7605200 772370 9812100 8120100 8195900 6695000 6771700 6745400 5447900 7773600 7 7 6 7 7 7 7 7 7 7 7 3076600 4155200 81235 4973500 6276200 5881900 3781500 3572700 3575100 2907800 4512900 2865200 3880300 372500 5029600 5959900 5884200 3959800 3729200 3679400 2867300 4324400 4 4 3 4 4 4 4 4 4 4 4 2518600 3988700 209400 4782500 2226900 2084500 2712600 3053200 3005900 2624100 3594500 2346600 3724900 399870 4782600 2160200 2311700 2735200 3042500 3066000 2580500 3449200 3 3 3 3 3 3 3 3 3 3 3 400590000 213020000 187560000 21121 2682 19411 109443;109444;109445;109446;109447 132669;132670;132671;132672;132673;132674;132675 132671 7 VRYSLDPENPTK Unmodified 1417.7201 0.72014333 721 P18621;P18621-3 RPL17 60S ribosomal protein L17 yes no 0 0 0 1 By MS/MS By MS/MS 5.5 0.957 1 2 2 1 4 2 40.447 40.54 3 6.6783E-08 9798 20211116_3444_TMUAki_TMT10x_S_F5 138.01 117.06 20225000 28608000 85728 46441000 41722000 32081000 20108000 33777000 47352000 25693000 36085000 18831000 26761000 1935100 45903000 39459000 33605000 22370000 34014000 46581000 25426000 35158000 9 9 5 9 9 9 9 9 9 9 9 8375400 11253000 19654 17531000 32562000 25355000 13025000 14080000 18679000 10488000 13447000 7797700 10524000 947810 17558000 30725000 25094000 14408000 14777000 18570000 10391000 13134000 4 4 2 4 4 4 4 4 4 4 4 11849000 17355000 66074 28910000 9160100 6725100 7082900 19697000 28673000 15205000 22637000 11033000 16237000 987250 28345000 8733600 8511000 7961500 19238000 28011000 15035000 22024000 5 5 3 5 5 5 5 5 5 5 5 2849800000 1911400000 938430000 21122 721 19412 109448;109449;109450;109451;109452;109453 132676;132677;132678;132679;132680;132681;132682;132683;132684;132685;132686 132682 11 VSAEAEVAPVSPEVTQEVVEEHCASPEDK Unmodified 3121.4398 0.43975389 1057 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.17 1.07 2 2 1 1 2 4 58.84 58.626 4 3.4218E-25 19609 20211116_3439_TMUAki_TMT10x_S_F1 148 135.56 9082400 15806000 131950 15362000 10131000 12396000 9251200 12317000 12824000 12344000 12737000 8457200 14747000 834370 15659000 9696100 12809000 9540500 12527000 12886000 12054000 12289000 7 7 4 7 7 7 7 7 7 7 7 2745800 4120800 43560 4093100 3353100 5881800 3378400 3716800 3571600 3414200 3666600 2556900 3845000 267200 4204300 3217800 5833000 3431500 3879200 3628400 3346900 3534100 2 2 1 2 2 2 2 2 2 2 2 6336600 11685000 88392 11269000 6777700 6514100 5872800 8599700 9252100 8929500 9070100 5900300 10902000 567170 11454000 6478400 6976200 6109000 8648200 9258100 8707400 8755200 5 5 3 5 5 5 5 5 5 5 5 5419000000 2104900000 3314100000 21123 1057 19413 109454;109455;109456;109457;109458;109459 132687;132688;132689;132690;132691;132692;132693 132689 7 VSALDLAVLDQVEAR Unmodified 1597.8675 0.86753585 1647 Q13561;Q13561-3;Q13561-2 DCTN2 Dynactin subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.14 1.12 3 1 2 1 3 4 77.999 77.954 2;3 1.1575E-23 25660 20211116_3440_TMUAki_TMT10x_S_F2 189.33 162.21 10833000 18760000 134580 16930000 14479000 13953000 14329000 10114000 10134000 11200000 14250000 10088000 17498000 1045700 17356000 13886000 14312000 14413000 10509000 10639000 10894000 13619000 4 4 3 4 4 4 4 4 4 4 4 1358700 1987500 4323.6 1926000 1314200 2321500 1476700 1200100 1344500 1315400 1545700 1265100 1854300 116050 1975100 1264500 2315400 1485300 1280300 1380800 1280000 1484800 1 1 1 1 1 1 1 1 1 1 1 9474500 16773000 130260 15004000 13165000 11632000 12852000 8913700 8789600 9884500 12704000 8822500 15644000 929630 15381000 12622000 11997000 12927000 9229100 9258600 9613800 12134000 3 3 2 3 3 3 3 3 3 3 3 4457700000 1868400000 2589300000 21124 1647 19414 109460;109461;109462;109463;109464;109465;109466 132694;132695;132696;132697;132698 132696 5 VSASPLLYTLIEK Unmodified 1432.8177 0.81773211 480 P02786 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes yes 0 0 0 0 By MS/MS By MS/MS 3.8 3.25 5 1 1 3 4 6 78.876 78.863 2;3 1.8902E-14 25338 20211116_3447_TMUAki_TMT10x_S_F8 169.21 134.95 34740000 61128000 487260 59306000 36315000 46672000 42543000 29460000 29557000 33866000 41321000 32346000 57032000 2882800 60441000 34976000 47939000 42425000 30954000 31055000 32893000 39497000 7 7 3 7 7 7 7 7 7 7 7 12467000 21645000 95092 21695000 11535000 20788000 14354000 9472400 10088000 11217000 14279000 11607000 20198000 915540 22115000 11124000 20979000 14280000 10254000 10598000 10884000 13645000 2 2 1 2 2 2 2 2 2 2 2 22274000 39482000 392170 37611000 24780000 25885000 28189000 19988000 19469000 22648000 27042000 20740000 36834000 1967300 38326000 23851000 26960000 28145000 20700000 20457000 22010000 25852000 5 5 2 5 5 5 5 5 5 5 5 8033400000 3596900000 4436400000 21125 480 19415 109467;109468;109469;109470;109471;109472;109473;109474;109475;109476 132699;132700;132701;132702;132703;132704;132705;132706 132706 8 VSCLGVTDDGMAVATGSWDSFLK Oxidation (M) 2431.1036 0.10356173 1376;1377 P62879;P62879-2;P62873 GNB2;GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 no no 0 0 1 0 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 78.579 78.593 3 1.285E-15 27689 20211116_3446_TMUAki_TMT10x_S_F7 132.01 123.08 9991800 17565000 69048 15615000 12436000 14865000 12657000 8463200 8227700 10012000 13247000 9303000 16383000 811710 16056000 11926000 15046000 12689000 8974200 8742200 9714200 12623000 5 5 3 5 5 5 5 5 5 5 5 5246900 9212800 69048 8610100 5798600 9987800 6428400 4530700 4545200 5841300 7070700 4885900 8594300 507080 8846900 5580000 9967300 6429300 4921100 4796000 5650900 6742700 3 3 3 3 3 3 3 3 3 3 3 4744900 8352000 0 7004800 6637000 4877000 6228200 3932500 3682500 4170400 6176100 4417100 7788300 304630 7209400 6346100 5078300 6260100 4053100 3946200 4063300 5880700 2 2 0 2 2 2 2 2 2 2 2 4239400000 1874000000 2365500000 21126 1377;1376 19416 109477;109478;109479;109480;109481 132707;132708;132709;132710;132711 132711 1849 5 VSCLGVTDDGMAVATGSWDSFLK Unmodified 2415.1086 0.10864711 1376;1377 P62879;P62879-2;P62873 GNB2;GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 no no 0 0 0 0 By MS/MS By MS/MS 7 0.707 1 2 1 2 2 79.831 79.834 3 4.9922E-21 28200 20211116_3446_TMUAki_TMT10x_S_F7 152 141.31 6077800 10872000 40934 10763000 8805400 5322000 8403200 3275300 2981600 3738300 7399800 5659400 10144000 580250 10906000 8435400 5711400 8376900 3447200 3427300 3631900 7001600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6077800 10872000 40934 10763000 8805400 5322000 8403200 3275300 2981600 3738300 7399800 5659400 10144000 580250 10906000 8435400 5711400 8376900 3447200 3427300 3631900 7001600 2 2 2 2 2 2 2 2 2 2 2 2228600000 365490000 1863100000 21127 1377;1376 19416 109482;109483;109484;109485 132712;132713;132714 132713 3 VSEEIEDIIK Unmodified 1173.6129 0.61288429 317 O75223;O75223-3 GGCT Gamma-glutamylcyclotransferase yes no 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 1 4 69.66 69.442 2 1.0455E-08 25088 20211116_3441_TMUAki_TMT10x_S_F3 136.33 66.943 20801000 31858000 246270 37424000 22307000 21773000 19740000 15622000 16430000 15784000 22970000 19370000 29748000 1975100 37552000 21339000 23008000 20055000 16198000 17091000 15408000 21956000 5 5 5 5 5 5 5 5 5 5 5 6867700 10161000 87055 11875000 10082000 11795000 7780300 5360800 5478400 5342100 7217000 6395100 9488100 695530 11992000 9614700 11876000 7941000 5774600 5735800 5218100 6908200 2 2 2 2 2 2 2 2 2 2 2 13933000 21697000 159210 25550000 12225000 9978800 11959000 10261000 10951000 10441000 15753000 12974000 20260000 1279600 25560000 11725000 11133000 12114000 10424000 11356000 10190000 15048000 3 3 3 3 3 3 3 3 3 3 3 914830000 305580000 609240000 21128 317 19417 109486;109487;109488;109489;109490 132715;132716;132717;132718;132719;132720;132721 132721 7 VSEEIFFGR Unmodified 1082.5397 0.53965977 3305 Q9Y4W6 AFG3L2 AFG3-like protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 61.322 61.197 2 0.00025273 18957 20211116_3431_TMUAki_TMT10x_P_F4 96.311 59.805 37018000 48956000 0 65390000 32976000 32043000 39362000 25636000 28789000 33561000 42696000 34464000 45743000 2595300 65049000 31752000 34556000 39265000 26625000 30244000 32451000 40756000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37018000 48956000 0 65390000 32976000 32043000 39362000 25636000 28789000 33561000 42696000 34464000 45743000 2595300 65049000 31752000 34556000 39265000 26625000 30244000 32451000 40756000 1 1 0 1 1 1 1 1 1 1 1 944850000 0 944850000 21129 3305 19418 109491;109492 132722;132723 132722 2 VSELHLEVK Unmodified 1052.5866 0.58660996 3190 Q9UNF0;Q9UNF0-2 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 yes no 0 0 0 0 By MS/MS 4 0 1 1 45.955 46.157 3 0.0037089 13226 20211116_3442_TMUAki_TMT10x_S_F4 70.028 40.219 1390800 2408100 13068 2516300 1318500 1376200 1220200 1437600 1558100 1571000 1796400 1295100 2247400 126470 2542300 1262600 1473700 1253300 1462500 1578800 1528800 1725600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1390800 2408100 13068 2516300 1318500 1376200 1220200 1437600 1558100 1571000 1796400 1295100 2247400 126470 2542300 1262600 1473700 1253300 1462500 1578800 1528800 1725600 1 1 1 1 1 1 1 1 1 1 1 41042000 0 41042000 21130 3190 19419 109493 132724 132724 1 VSEQGLIEILK Unmodified 1227.7075 0.70745338 127 O14737 PDCD5 Programmed cell death protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.756 2 3 2 4 3 75.219 75.198 2;3 1.128E-18 23819 20211116_3444_TMUAki_TMT10x_S_F5 225.93 168.89 37124000 60439000 223500 61661000 39740000 49163000 41693000 33191000 33849000 35092000 44234000 34568000 56401000 3288400 62631000 38165000 50496000 41946000 34609000 35147000 34195000 42350000 8 8 6 8 8 8 8 8 8 8 8 14929000 23168000 124010 24019000 15313000 25804000 17228000 13398000 13234000 14144000 17092000 13901000 21622000 1330000 24470000 14736000 25899000 17251000 14271000 13775000 13783000 16369000 3 3 2 3 3 3 3 3 3 3 3 22195000 37271000 99494 37642000 24427000 23359000 24466000 19792000 20615000 20949000 27142000 20667000 34779000 1958300 38161000 23428000 24597000 24695000 20338000 21372000 20412000 25981000 5 5 4 5 5 5 5 5 5 5 5 2946300000 1479600000 1466700000 21131 127 19420 109494;109495;109496;109497;109498;109499;109500 132725;132726;132727;132728;132729;132730;132731;132732;132733 132731 9 VSEQGLIEILKK Unmodified 1355.8024 0.8024164 127 O14737 PDCD5 Programmed cell death protein 5 yes yes 0 0 0 1 By MS/MS By MS/MS 6.88 0.781 3 3 2 5 3 72.55 72.645 3 4.2981E-12 23384 20211116_3435_TMUAki_TMT10x_P_F7 171.87 108.95 96076000 158670000 1812300 163610000 128330000 158230000 109290000 116120000 116580000 117510000 125880000 89467000 148070000 9804500 166480000 122660000 160580000 112080000 120230000 118610000 114710000 121140000 11 11 9 11 11 11 11 11 11 11 11 49897000 80112000 621820 83135000 76140000 111840000 65691000 60381000 60598000 61742000 63732000 46461000 74764000 4782300 85027000 72762000 111010000 67022000 64029000 61982000 60244000 61383000 6 6 4 6 6 6 6 6 6 6 6 46178000 78554000 1190500 80475000 52190000 46390000 43600000 55736000 55980000 55771000 62145000 43006000 73306000 5022200 81453000 49898000 49571000 45057000 56198000 56627000 54468000 59758000 5 5 5 5 5 5 5 5 5 5 5 8873200000 4636500000 4236700000 21132 127 19421 109501;109502;109503;109504;109505;109506;109507;109508 132734;132735;132736;132737;132738;132739;132740;132741;132742;132743;132744;132745;132746 132736 13 VSEQQLLEDCGIHLGVHR Unmodified 2089.0375 0.037471499 2017 Q6SZW1;Q6SZW1-2 SARM1 Sterile alpha and TIR motif-containing protein 1 yes no 0 0 0 0 By matching By MS/MS 4 0.816 1 1 1 1 2 52.218 52.264 4 5.2557E-08 15734 20211116_3442_TMUAki_TMT10x_S_F4 103.5 82.763 4960300 8864100 200260 9509100 5365200 4808900 4987700 7706200 7103700 6652600 7322900 4620000 8273600 603550 9585000 5147000 5254000 5144500 7657400 7142000 6540600 7057400 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4960300 8864100 200260 9509100 5365200 4808900 4987700 7706200 7103700 6652600 7322900 4620000 8273600 603550 9585000 5147000 5254000 5144500 7657400 7142000 6540600 7057400 3 3 3 3 3 3 3 3 3 3 3 1001800000 213070000 788740000 21133 2017 19422 109509;109510;109511 132747;132748;132749 132747 3 VSFCAPGPPGR Unmodified 1143.5495 0.54951295 2163 Q8IY67-2;Q8IY67 RAVER1 Ribonucleoprotein PTB-binding 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 2 1 43.98 44.03 2 4.2546E-07 11601 20211116_3428_TMUAki_TMT10x_P_F1 111.46 102.68 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21134 2163 19423 109512;109513;109514 132750;132751;132752 132750 3 VSFELFADK Unmodified 1054.5335 0.53351176 1385 P62937 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 5.56 1.17 1 3 3 2 4 5 72.598 72.621 2;3 4.2742E-06 23022 20211116_3445_TMUAki_TMT10x_S_F6 186.76 117.38 147970000 226690000 2590800 288430000 130690000 160680000 159540000 109850000 103860000 115250000 160760000 137790000 211750000 13899000 287980000 126160000 170430000 158590000 114420000 110120000 112330000 153320000 13 13 7 13 12 13 12 13 13 13 13 51345000 77455000 180190 98991000 48691000 80111000 48715000 37355000 33891000 41423000 53314000 47806000 72354000 3971800 99183000 46680000 81816000 48951000 40259000 35816000 40288000 50829000 4 4 1 4 3 4 3 4 4 4 4 96622000 149230000 2410700 189440000 81995000 80568000 110820000 72498000 69971000 73823000 107450000 89981000 139400000 9927300 188800000 79483000 88612000 109640000 74158000 74301000 72045000 102490000 9 9 6 9 9 9 9 9 9 9 9 23172000000 10490000000 12682000000 21135 1385 19424 109515;109516;109517;109518;109519;109520;109521;109522;109523 132753;132754;132755;132756;132757;132758;132759;132760;132761;132762;132763;132764;132765;132766;132767 132763 15 VSFELFADKVPK Unmodified 1378.7497 0.74965254 1385 P62937 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 3.65 2.93 28 13 1 2 4 8 13 36 33 77.177 77.182 2;3;4 4.1225E-15 22056 20211116_3436_TMUAki_TMT10x_P_F8 182.71 157.48 1344900000 2203400000 15042000 1987000000 1698500000 2122300000 1562900000 1751800000 1592200000 1672200000 1756400000 1252300000 2055200000 125240000 2044400000 1625800000 2145400000 1593300000 1797400000 1624300000 1636500000 1689300000 80 80 42 80 80 80 80 80 80 80 80 598760000 943830000 2930300 848210000 755510000 1267000000 741820000 744720000 717540000 734070000 755450000 557520000 880340000 53077000 878330000 724150000 1253100000 752430000 783220000 732380000 717370000 727580000 39 39 19 39 39 39 39 39 39 39 39 746180000 1259500000 12112000 1138800000 942980000 855340000 821100000 1007100000 874660000 938150000 1001000000 694820000 1174800000 72158000 1166000000 901600000 892250000 840900000 1014200000 891950000 919090000 961690000 41 41 23 41 41 41 41 41 41 41 41 281750000000 152150000000 129590000000 21136 1385 19425 109524;109525;109526;109527;109528;109529;109530;109531;109532;109533;109534;109535;109536;109537;109538;109539;109540;109541;109542;109543;109544;109545;109546;109547;109548;109549;109550;109551;109552;109553;109554;109555;109556;109557;109558;109559;109560;109561;109562;109563;109564;109565;109566;109567;109568;109569;109570;109571;109572;109573;109574;109575;109576;109577;109578;109579;109580;109581;109582;109583;109584;109585;109586;109587;109588;109589;109590;109591;109592 132768;132769;132770;132771;132772;132773;132774;132775;132776;132777;132778;132779;132780;132781;132782;132783;132784;132785;132786;132787;132788;132789;132790;132791;132792;132793;132794;132795;132796;132797;132798;132799;132800;132801;132802;132803;132804;132805;132806;132807;132808;132809;132810;132811;132812;132813;132814;132815;132816;132817;132818;132819;132820;132821;132822;132823;132824;132825;132826;132827;132828;132829;132830;132831;132832;132833;132834;132835;132836;132837;132838;132839;132840;132841;132842;132843;132844;132845;132846;132847;132848;132849;132850;132851;132852;132853;132854;132855;132856;132857;132858;132859;132860 132810 93 VSFGVDEEERVR Unmodified 1420.6947 0.69465686 2641 Q9BRQ6 CHCHD6 MICOS complex subunit MIC25 yes yes 0 0 0 1 By MS/MS 3 0 1 1 40.123 39.836 3 0.042927 12972 20211116_3441_TMUAki_TMT10x_S_F3 44.829 22.956 518590 819750 7666.1 1072200 456330 412920 475860 643260 681280 571140 814540 482920 765860 49267 1066100 438510 466500 488020 640240 688830 560770 781630 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 518590 819750 7666.1 1072200 456330 412920 475860 643260 681280 571140 814540 482920 765860 49267 1066100 438510 466500 488020 640240 688830 560770 781630 1 1 1 1 1 1 1 1 1 1 1 32098000 0 32098000 21137 2641 19426 109593 132861 132861 1 VSFSYAGLSGDDPDLGPAHVVTVIAR Unmodified 2642.334 0.33403068 2668 Q9BTV4 TMEM43 Transmembrane protein 43 yes yes 0 0 0 0 By MS/MS 7 0 1 1 75.733 75.84 3 1.6603E-08 26529 20211116_3446_TMUAki_TMT10x_S_F7 90.062 82.616 1320600 2525900 52540 2209500 1735400 1647900 1771800 1337500 1268800 1614600 1955700 1230000 2355800 164260 2268000 1668100 1706500 1779800 1383800 1337200 1565500 1865400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1320600 2525900 52540 2209500 1735400 1647900 1771800 1337500 1268800 1614600 1955700 1230000 2355800 164260 2268000 1668100 1706500 1779800 1383800 1337200 1565500 1865400 1 1 1 1 1 1 1 1 1 1 1 652740000 0 652740000 21138 2668 19427 109594 132862 132862 1 VSFYQLSHFLQCK Unmodified 1655.813 0.81299786 697 P16615;P16615-5;P16615-2;P16615-3;P16615-4 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 76.182 76.2 3 8.3544E-10 25423 20211116_3433_TMUAki_TMT10x_P_F5 136.99 104.38 6157900 10865000 214800 11412000 7278500 9165100 7578000 4773500 4102000 5328000 7560800 5735200 10141000 726410 11570000 6999500 9376700 7563400 5091600 4447900 5180800 7186600 2 2 2 2 2 2 2 2 2 2 2 3372300 5887400 128560 6314200 4268700 6614400 4325500 2584800 2334600 2995400 4045300 3140900 5495200 411960 6415900 4102300 6629200 4323000 2843700 2522900 2908600 3849400 1 1 1 1 1 1 1 1 1 1 1 2785600 4978000 86236 5097800 3009800 2550700 3252500 2188700 1767300 2332600 3515500 2594300 4645500 314460 5154000 2897200 2747500 3240400 2247900 1925000 2272200 3337200 1 1 1 1 1 1 1 1 1 1 1 824320000 548710000 275610000 21139 697 19428 109595;109596 132863;132864 132863 2 VSGGLEVLAEK Unmodified 1100.6077 0.60773933 977 P39687;O43423 ANP32A;ANP32C Acidic leucine-rich nuclear phosphoprotein 32 family member A;Acidic leucine-rich nuclear phosphoprotein 32 family member C yes no 0 0 0 0 By MS/MS By MS/MS 4.38 1 3 4 4 2 7 6 59.575 59.578 2;3 8.6473E-15 18749 20211116_3442_TMUAki_TMT10x_S_F4 195.27 156.12 133890000 202600000 1108300 225930000 171330000 182000000 143640000 132780000 130220000 135370000 163260000 124670000 189140000 12120000 228180000 163620000 187010000 146740000 137570000 134230000 132110000 156460000 18 18 13 18 18 18 18 18 18 18 18 66872000 99050000 537390 108530000 111790000 124020000 76058000 65026000 63022000 66194000 77547000 62267000 92460000 6529900 110280000 106310000 124060000 78614000 69126000 65200000 64601000 74357000 10 10 8 10 10 10 10 10 10 10 10 67021000 103550000 570950 117400000 59549000 57978000 67584000 67757000 67197000 69180000 85709000 62404000 96677000 5590000 117900000 57310000 62950000 68121000 68440000 69035000 67506000 82108000 8 8 5 8 8 8 8 8 8 8 8 14274000000 7961600000 6312300000 21140 977 19429 109597;109598;109599;109600;109601;109602;109603;109604;109605;109606;109607;109608;109609 132865;132866;132867;132868;132869;132870;132871;132872;132873;132874;132875;132876;132877;132878;132879;132880;132881;132882;132883 132877 19 VSGISFPTTELLR Unmodified 1418.7769 0.77692993 2705 Q9BW92 TARS2 Threonine--tRNA ligase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 71.982 71.918 2 8.2495E-23 23105 20211116_3436_TMUAki_TMT10x_P_F8 212.89 164.93 18378000 31725000 175170 28382000 18278000 26703000 19613000 17888000 17203000 18161000 22417000 17113000 29590000 1684100 29165000 17570000 27108000 19750000 18640000 17792000 17726000 21464000 6 6 5 6 6 6 6 6 6 6 6 12783000 21863000 102460 19968000 10940000 20577000 13024000 12430000 12297000 12527000 15294000 11903000 20393000 1128100 20513000 10548000 20741000 13079000 13052000 12648000 12231000 14661000 4 4 3 4 4 4 4 4 4 4 4 5595300 9862300 72709 8414100 7337600 6126100 6588700 5457800 4906500 5634200 7123000 5210300 9197200 556050 8651900 7021200 6367000 6670300 5588100 5143800 5495400 6802700 2 2 2 2 2 2 2 2 2 2 2 1553600000 849380000 704240000 21141 2705 19430 109610;109611;109612;109613 132884;132885;132886;132887;132888;132889 132887 6 VSGQAEVDDILAAVRPTTR Unmodified 1997.0542 0.054167421 2493 Q96I15;Q96I15-2 SCLY Selenocysteine lyase yes no 0 0 0 1 By MS/MS 5 0 1 1 67.975 68.005 3 2.7081E-05 20914 20211116_3444_TMUAki_TMT10x_S_F5 83.251 55.281 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21142 2493 19431 109614 132890 132890 1 VSGSPEQAVEENLSSYSLDRR Unmodified 2322.1088 0.10878177 3345 Q9Y6A5 TACC3 Transforming acidic coiled-coil-containing protein 3 yes yes 0 0 0 1 By MS/MS By MS/MS 4 0.816 2 2 2 4 2 59.047 58.974 3 1.1023E-34 19730 20211116_3430_TMUAki_TMT10x_P_F3 181.54 162.47 4287300 7942700 50632 7804900 4978200 5941400 4608600 5969800 5928000 6283900 5951900 3992200 7410900 411660 7944100 4767000 6168300 4734900 6077700 5973800 6124200 5740900 3 3 2 3 3 3 3 3 3 3 3 1227100 2027700 24228 1942500 1616300 2746300 1758500 1624900 1617700 1657100 1637100 1142800 1891700 129770 1999700 1554800 2723000 1772000 1709700 1652600 1617100 1578700 1 1 1 1 1 1 1 1 1 1 1 3060100 5915000 26404 5862400 3361900 3195100 2850100 4344900 4310300 4626800 4314800 2849500 5519200 281890 5944400 3212300 3445300 2962900 4368000 4321300 4507200 4162200 2 2 1 2 2 2 2 2 2 2 2 1114000000 822540000 291460000 21143 3345 19432 109615;109616;109617;109618;109619;109620 132891;132892;132893;132894;132895;132896 132891 6 VSGVDGYETEGIR Unmodified 1380.6521 0.65212334 1716 Q14566 MCM6 DNA replication licensing factor MCM6 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 43.238 43.039 2 0.0036492 12779 20211116_3429_TMUAki_TMT10x_P_F2 70.345 53.771 5050400 8136100 30228 11273000 10512000 8482400 5515800 7817800 9534600 6485400 8633200 4702500 7603600 503370 11237000 9953900 8798400 5980500 7942300 9492000 6388900 8356100 4 4 1 4 4 4 4 4 4 4 4 2391200 3277300 0 4757800 8114500 6585000 3377900 3190300 4176500 2503700 3621700 2226400 3063600 268340 4776500 7660800 6519300 3698700 3394500 4194200 2473600 3510900 2 2 0 2 2 2 2 2 2 2 2 2659200 4858800 30228 6515000 2397000 1897400 2138000 4627500 5358200 3981700 5011500 2476100 4540000 235030 6460300 2293100 2279100 2281900 4547800 5297800 3915400 4845100 2 2 1 2 2 2 2 2 2 2 2 402570000 190880000 211680000 21144 1716 19433 109621;109622;109623;109624 132897;132898;132899;132900 132899 4 VSHIDVITAEMAK Oxidation (M) 1428.7283 0.72826518 3219 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 1 0 By MS/MS 5 0 1 1 43.963 44.087 3 0.0032535 12273 20211116_3433_TMUAki_TMT10x_P_F5 66.004 47.224 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21145 3219 19434 109625 132901 132901 3210 1 VSHIDVITAEMAK Unmodified 1412.7334 0.73335055 3219 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 53.081 53.19 3 3.1124E-05 14759 20211116_3434_TMUAki_TMT10x_P_F6 99.011 77.138 11149000 17171000 40999 20614000 17304000 18163000 12885000 10400000 10379000 10461000 13687000 10381000 16036000 1039100 20749000 16482000 18480000 13223000 10968000 10786000 10215000 13101000 4 4 2 4 4 4 4 4 4 4 4 8667700 13422000 27514 16240000 15108000 16319000 10948000 8097900 8024900 8038900 10768000 8070600 12535000 824770 16370000 14383000 16435000 11232000 8646500 8389200 7853700 10302000 3 3 1 3 3 3 3 3 3 3 3 2481200 3749400 13485 4373600 2195800 1843900 1937500 2302400 2353800 2422500 2919000 2310300 3500900 214280 4379900 2099700 2044700 1991600 2321400 2396400 2361000 2798300 1 1 1 1 1 1 1 1 1 1 1 619150000 425760000 193390000 21146 3219 19434 109626;109627 132902;132903;132904;132905 132903 4 VSHLLGINVTDFTR Unmodified 1570.8467 0.84674083 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS 2.62 2.12 2 4 1 1 4 4 65.425 65.229 2;3 6.8982E-33 21856 20211116_3429_TMUAki_TMT10x_P_F2 225.15 185.15 33541000 57663000 490570 56381000 41907000 53312000 40236000 45464000 43240000 44642000 46620000 31232000 53801000 2977000 57562000 40154000 54324000 40993000 46596000 43978000 43634000 44868000 11 11 5 11 11 11 11 11 11 11 11 13625000 22672000 126180 21638000 17226000 30925000 18265000 17749000 16832000 17088000 18423000 12687000 21151000 1115600 22286000 16548000 30636000 18428000 18691000 17243000 16716000 17723000 5 5 2 5 5 5 5 5 5 5 5 19916000 34991000 364390 34743000 24681000 22387000 21971000 27714000 26408000 27554000 28197000 18545000 32650000 1861400 35277000 23606000 23688000 22565000 27904000 26735000 26918000 27145000 6 6 3 6 6 6 6 6 6 6 6 8764100000 4904100000 3859900000 21147 934 19435 109628;109629;109630;109631;109632;109633;109634;109635 132906;132907;132908;132909;132910;132911;132912;132913;132914;132915;132916;132917 132909 12 VSHVSTGGGASLELLEGK Unmodified 1739.9054 0.90537792 473 P00558;P00558-2;P07205 PGK1;PGK2 Phosphoglycerate kinase 1;Phosphoglycerate kinase 2 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 1.12 2 2 2 2 4 4 52.234 52.461 3 2.7398E-31 16254 20211116_3435_TMUAki_TMT10x_P_F7 185.14 159.76 66783000 108030000 396550 120920000 92315000 115930000 69624000 93479000 97222000 90463000 87827000 62181000 100850000 5850000 122370000 87943000 117910000 72664000 96086000 97366000 88475000 85014000 15 15 6 15 15 15 15 15 15 15 15 37855000 60095000 100880 64662000 65441000 90083000 47442000 54573000 54854000 51228000 48200000 35245000 56092000 3256600 66023000 62278000 89405000 49293000 57178000 55244000 50169000 46703000 8 8 1 8 8 8 8 8 8 8 8 28928000 47935000 295670 56260000 26874000 25847000 22182000 38906000 42368000 39235000 39626000 26936000 44759000 2593400 56351000 25665000 28501000 23370000 38908000 42121000 38306000 38311000 7 7 5 7 7 7 7 7 7 7 7 10126000000 5961500000 4164800000 21148 473 19436 109636;109637;109638;109639;109640;109641;109642;109643 132918;132919;132920;132921;132922;132923;132924;132925;132926;132927;132928;132929;132930;132931;132932 132921 15 VSHYIINSLPNRR Unmodified 1567.8583 0.85830857 1046 P46109 CRKL Crk-like protein yes yes 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 37.955 38.101 3;4 3.9172E-06 9993 20211116_3433_TMUAki_TMT10x_P_F5 100.54 60.497 1623900 2943600 20099 3099300 1529300 1330700 1201000 3109900 3301900 2451400 2805600 1512100 2747300 152040 3124300 1459400 1504700 1300400 3052400 3249600 2421300 2721800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1623900 2943600 20099 3099300 1529300 1330700 1201000 3109900 3301900 2451400 2805600 1512100 2747300 152040 3124300 1459400 1504700 1300400 3052400 3249600 2421300 2721800 2 2 2 2 2 2 2 2 2 2 2 159680000 0 159680000 21149 1046 19437 109644;109645 132933;132934;132935 132933 3 VSHYIINSSGPRPPVPPSPAQPPPGVSPSR Unmodified 3073.6098 0.60975203 1044;1045 P46108;P46108-2 CRK Adapter molecule crk no no 0 0 0 1 By MS/MS 5 0 1 1 47.973 48.145 4 2.2746E-20 12864 20211116_3444_TMUAki_TMT10x_S_F5 133.56 123.23 1722300 3052600 17991 3532100 1541100 1363400 1193300 2034100 2042700 1931200 2238700 1603700 2850200 148930 3537000 1469500 1537800 1254900 2031200 2047900 1890300 2153500 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1722300 3052600 17991 3532100 1541100 1363400 1193300 2034100 2042700 1931200 2238700 1603700 2850200 148930 3537000 1469500 1537800 1254900 2031200 2047900 1890300 2153500 2 2 1 2 2 2 2 2 2 2 2 297010000 0 297010000 21150 1044;1045 19438 109646 132936;132937 132937 2 VSIAQWPALTFTPLVDK Unmodified 1885.0349 0.034935528 2066 Q7LBC6 KDM3B Lysine-specific demethylase 3B yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 80.67 80.633 3 0.0097566 26975 20211116_3431_TMUAki_TMT10x_P_F4 50.957 38.792 1220800 1855500 55085 1823300 1238000 1209600 1497600 804950 942430 852320 1289700 1137100 1731200 152790 1853100 1196900 1261000 1488300 840250 995380 830470 1233400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1220800 1855500 55085 1823300 1238000 1209600 1497600 804950 942430 852320 1289700 1137100 1731200 152790 1853100 1196900 1261000 1488300 840250 995380 830470 1233400 1 1 1 1 1 1 1 1 1 1 1 257860000 0 257860000 21151 2066 19439 109647;109648 132938;132939 132938 2 VSILESLDKWER Unmodified 1473.7827 0.78274359 611 P10644;P10644-2 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed yes no 0 0 0 1 By MS/MS 7 0 1 1 72.345 72.552 3 5.7235E-15 25132 20211116_3446_TMUAki_TMT10x_S_F7 149.96 128.12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21152 611 19440 109649 132940 132940 1 VSISEGDDKIEYR Unmodified 1509.7311 0.73110195 765 P22087 FBL rRNA 2'-O-methyltransferase fibrillarin yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 1 1 1 1 2 44.113 43.955 3 1.344E-11 14631 20211116_3441_TMUAki_TMT10x_S_F3 146.34 115.34 1081300 1718400 0 1871500 939710 1014200 1006400 2541000 1985400 1593500 1696700 1006700 1604100 68945 1885600 901500 1120400 1047600 2478100 1966700 1595300 1645700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1081300 1718400 0 1871500 939710 1014200 1006400 2541000 1985400 1593500 1696700 1006700 1604100 68945 1885600 901500 1120400 1047600 2478100 1966700 1595300 1645700 1 1 0 1 1 1 1 1 1 1 1 142810000 0 142810000 21153 765 19441 109650;109651;109652 132941;132942 132942 2 VSIVTPEDILR Unmodified 1240.7027 0.70270235 1220 P54578;P54578-2;P54578-3 USP14 Ubiquitin carboxyl-terminal hydrolase 14 yes no 0 0 0 0 By MS/MS 5 0 1 1 69.053 69.076 2 0.00016133 21353 20211116_3444_TMUAki_TMT10x_S_F5 90.827 59.373 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21154 1220 19442 109653 132943 132943 1 VSLDVNHFAPDELTVK Unmodified 1782.9152 0.91521432 492 P04792 HSPB1 Heat shock protein beta-1 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 64.611 65.254 3 1.2775E-05 22095 20211116_3446_TMUAki_TMT10x_S_F7 86.488 68.35 10835000 17580000 223500 16842000 13385000 24115000 14555000 14367000 13279000 13665000 14907000 10090000 16401000 1142300 17342000 12877000 23899000 14663000 15078000 13622000 13375000 14330000 2 2 2 2 2 2 2 2 2 2 2 10835000 17580000 223500 16842000 13385000 24115000 14555000 14367000 13279000 13665000 14907000 10090000 16401000 1142300 17342000 12877000 23899000 14663000 15078000 13622000 13375000 14330000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 652910000 652910000 0 21155 492 19443 109654;109655 132944;132945;132946 132946 3 VSLEDLYNGK Unmodified 1136.5714 0.57135383 298 O60884 DNAJA2 DnaJ homolog subfamily A member 2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 3 3 2 4 63.43 63.438 2;3 1.0783E-08 19041 20211116_3444_TMUAki_TMT10x_S_F5 135.43 95.427 14762000 25311000 88882 25983000 17686000 22383000 17197000 19081000 19669000 18412000 19002000 13745000 23620000 1285200 26405000 16947000 22950000 17546000 19547000 19878000 18010000 18351000 3 3 2 3 3 3 3 3 3 3 3 6232000 10612000 16963 10193000 9503600 13587000 9164400 7426000 7406000 7832400 7404000 5802700 9900200 578300 10479000 9105000 13494000 9259100 7873400 7611200 7632800 7142400 1 1 1 1 1 1 1 1 1 1 1 8530500 14699000 71919 15789000 8182200 8795600 8033100 11655000 12264000 10580000 11598000 7942700 13720000 706850 15926000 7842000 9456000 8287000 11674000 12267000 10377000 11209000 2 2 1 2 2 2 2 2 2 2 2 1027800000 308690000 719130000 21156 298 19444 109656;109657;109658;109659;109660;109661 132947;132948;132949;132950;132951 132950 5 VSLEEIYSGCTK Unmodified 1384.6544 0.65443153 804 P25685;P25685-2;Q9UDY4 DNAJB1;DNAJB4 DnaJ homolog subfamily B member 1;DnaJ homolog subfamily B member 4 yes no 0 0 0 0 By MS/MS 5 0 1 1 61.003 61.171 2 5.4986E-06 19197 20211116_3433_TMUAki_TMT10x_P_F5 105.46 67.104 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21157 804 19445 109662 132952 132952 1 VSLEEIYSGCTKK Unmodified 1512.7494 0.74939455 804 P25685;P25685-2 DNAJB1 DnaJ homolog subfamily B member 1 yes no 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 53.864 54.381 3 0.00021929 17605 20211116_3446_TMUAki_TMT10x_S_F7 85.909 67.545 3842900 7786900 46028 7879500 5109400 4084500 3637000 8949200 7932900 7158000 7590700 3578500 7266300 379240 7975100 4864900 4504400 3899200 8799800 7870200 7064700 7333100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3842900 7786900 46028 7879500 5109400 4084500 3637000 8949200 7932900 7158000 7590700 3578500 7266300 379240 7975100 4864900 4504400 3899200 8799800 7870200 7064700 7333100 1 1 1 1 1 1 1 1 1 1 1 253720000 0 253720000 21158 804 19446 109663;109664 132953;132954 132954 2 VSLEETAQLPSAPQGSR Unmodified 1768.8955 0.89554151 2640 Q9BRP8;Q9BRP8-2 WIBG Partner of Y14 and mago yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 50.722 50.856 3 1.4312E-05 15181 20211116_3442_TMUAki_TMT10x_S_F4 89.877 75.187 15344000 23803000 166720 27414000 29438000 32163000 20106000 21158000 22409000 18761000 23930000 14287000 22224000 1548400 27783000 27997000 32226000 20954000 21996000 22750000 18421000 23037000 4 4 3 4 4 4 4 4 4 4 4 10667000 15477000 73283 18754000 25194000 28131000 16216000 14996000 15981000 13189000 16621000 9932300 14454000 1079700 19041000 23931000 27784000 16911000 15855000 16291000 12956000 16014000 2 2 1 2 2 2 2 2 2 2 2 4676200 8325100 93433 8660000 4243800 4032600 3889600 6162800 6427600 5571300 7309500 4354700 7769400 468710 8741800 4065900 4441500 4042500 6140700 6459200 5465600 7023900 2 2 2 2 2 2 2 2 2 2 2 1339200000 927680000 411570000 21159 2640 19447 109665;109666;109667 132955;132956;132957;132958;132959 132958 5 VSLERLDLDLTADSQPPVFK Unmodified 2242.1845 0.18451289 1615 Q13263;Q13263-2 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 0 1 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 77.151 77.142 3 2.0286E-32 25520 20211116_3431_TMUAki_TMT10x_P_F4 193.9 176.53 24246000 41111000 366490 36793000 35949000 36002000 30611000 28889000 27523000 27768000 32770000 22578000 38345000 2510800 37828000 34357000 36566000 31234000 29698000 28321000 27166000 31450000 6 6 5 6 6 6 6 6 6 6 6 8949000 14705000 164020 13245000 8435000 16784000 9743400 10203000 9618500 9396400 11282000 8333600 13716000 887590 13669000 8130700 16732000 9810900 10682000 9849700 9210300 10832000 2 2 2 2 2 2 2 2 2 2 2 15297000 26406000 202480 23548000 27514000 19218000 20868000 18687000 17904000 18371000 21488000 14244000 24629000 1623200 24160000 26226000 19833000 21423000 19017000 18471000 17955000 20617000 4 4 3 4 4 4 4 4 4 4 4 5685000000 2958600000 2726400000 21160 1615 19448 109668;109669;109670;109671;109672;109673 132960;132961;132962;132963;132964;132965 132960 6 VSNFKPGVYAVSVTGR Unmodified 1679.8995 0.89950468 1407 P63272 SUPT4H1 Transcription elongation factor SPT4 yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 52.209 52.392 3 1.1291E-10 15596 20211116_3433_TMUAki_TMT10x_P_F5 131.54 115.99 27703000 41624000 321190 55310000 53523000 55921000 31500000 29128000 32232000 27405000 33761000 25797000 38891000 2941800 55468000 50785000 56329000 33126000 30915000 32813000 26836000 32521000 4 4 3 4 4 4 4 4 4 4 4 27703000 41624000 321190 55310000 53523000 55921000 31500000 29128000 32232000 27405000 33761000 25797000 38891000 2941800 55468000 50785000 56329000 33126000 30915000 32813000 26836000 32521000 4 4 3 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1744300000 1744300000 0 21161 1407 19449 109674;109675 132966;132967;132968;132969 132968 4 VSNIFDDPLNAFGGQ Unmodified 1592.7471 0.74708636 1960 Q9Y4E1;Q641Q2;Q9Y4E1-5;Q9Y4E1-3;Q9Y4E1-6;Q9Y4E1-2;Q9Y4E1-1;Q641Q2-2;Q5SRD0 FAM21C;FAM21A;FAM21D WASH complex subunit FAM21C;WASH complex subunit FAM21A;Putative WASH complex subunit FAM21 yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 81.875 81.891 2 3.0898E-06 26863 20211116_3445_TMUAki_TMT10x_S_F6 107.18 88.864 1967700 3205600 35715 3096800 2411700 2877000 2807500 1988800 1993400 2232500 2705100 1832400 2990700 202640 3163600 2324500 2924500 2801900 2074200 2088800 2170300 2587500 3 3 3 3 3 3 3 3 3 3 3 636670 1017500 8380.8 926720 604910 1178600 799590 637170 662890 737660 841370 592870 949070 60150 955590 585410 1173000 796640 678160 686690 716290 806110 1 1 1 1 1 1 1 1 1 1 1 1331000 2188100 27334 2170100 1806800 1698400 2008000 1351600 1330500 1494800 1863700 1239500 2041700 142490 2208100 1739100 1751500 2005300 1396000 1402100 1454000 1781400 2 2 2 2 2 2 2 2 2 2 2 326490000 94328000 232160000 21162 1960 19450 109676;109677;109678 132970;132971 132971 2 VSNLQYLHSYLTYIK Unmodified 1840.9723 0.97233527 3116 Q9UHB9;Q9UHB9-4;Q9UHB9-2;Q9UHB9-3 SRP68 Signal recognition particle subunit SRP68 yes no 0 0 0 0 By MS/MS By MS/MS 4.25 0.433 3 1 1 3 73.121 73.068 3 1.2587E-06 22986 20211116_3444_TMUAki_TMT10x_S_F5 96.163 76.585 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21163 3116 19451 109679;109680;109681;109682 132972;132973;132974;132975 132975 4 VSPCLPVLSR Unmodified 1126.6169 0.61686423 282 O60684 KPNA6 Importin subunit alpha-7 yes yes 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 54.315 54.13 2 0.00031443 15673 20211116_3428_TMUAki_TMT10x_P_F1 113.74 88.921 25057000 40309000 178460 44751000 38631000 43065000 28431000 32775000 31923000 30407000 34111000 23331000 37629000 2333400 45315000 36789000 43745000 29481000 33772000 32401000 29795000 32838000 7 7 4 7 7 7 7 7 7 7 7 15126000 23647000 46016 26526000 28461000 34990000 20897000 19914000 18648000 17938000 20172000 14084000 22076000 1383900 26984000 27096000 34785000 21523000 20949000 19124000 17601000 19412000 4 4 2 4 4 4 4 4 4 4 4 9930900 16663000 132450 18226000 10171000 8074900 7534400 12861000 13275000 12469000 13939000 9247600 15554000 949480 18331000 9693700 8959800 7958100 12823000 13277000 12194000 13426000 3 3 2 3 3 3 3 3 3 3 3 1502700000 972180000 530530000 21164 282 19452 109683;109684;109685;109686 132976;132977;132978;132979;132980;132981;132982 132976 7 VSPDMAIFITMNPGYAGR Oxidation (M) 1954.9281 0.92810397 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 1 0 By MS/MS 1 0 1 1 75.083 75.006 3 0.0035924 26164 20211116_3439_TMUAki_TMT10x_S_F1 57.788 46.175 1549000 2881900 7432.7 2548500 1804400 1800600 1758200 1487600 1481300 1502600 2007800 1442300 2687900 138930 2612200 1729400 1873400 1777300 1528800 1537800 1466900 1920600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1549000 2881900 7432.7 2548500 1804400 1800600 1758200 1487600 1481300 1502600 2007800 1442300 2687900 138930 2612200 1729400 1873400 1777300 1528800 1537800 1466900 1920600 1 1 1 1 1 1 1 1 1 1 1 436180000 0 436180000 21165 1695 19453 109687 132983 132983 2286 1 VSPEEVTIYNHPGIQAELR Unmodified 2151.096 0.096032235 2286 Q8TEM1;Q8TEM1-2 NUP210 Nuclear pore membrane glycoprotein 210 yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 54.16 54.25 3 7.452E-24 16063 20211116_3431_TMUAki_TMT10x_P_F4 164.57 150.93 5256800 8605400 142360 8784200 7156200 9670500 5721700 6944100 7119300 6971900 7197000 4895600 8030400 584540 8962000 6833600 9735700 5922000 7198700 7184300 6808000 6940300 4 4 3 4 4 4 4 4 4 4 4 3143800 4860100 21564 4876300 5009800 7077100 3958100 3873200 4077600 3683200 3984700 2927300 4535000 296320 5006400 4777800 7001900 4073600 4094000 4139800 3605100 3846800 2 2 1 2 2 2 2 2 2 2 2 2113000 3745400 120790 3907900 2146400 2593400 1763500 3070800 3041700 3288700 3212300 1968300 3495400 288230 3955600 2055800 2733800 1848400 3104600 3044500 3202900 3093500 2 2 2 2 2 2 2 2 2 2 2 1467200000 920250000 546950000 21166 2286 19454 109688;109689;109690 132984;132985;132986;132987;132988 132984 5 VSPETVDSVIMGNVLQSSSDAIYLAR Oxidation (M) 2766.3746 0.37457486 1019 P42765 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes yes 0 0 1 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 79.178 79.178 3 7.1817E-39 25779 20211116_3445_TMUAki_TMT10x_S_F6 180.66 165.15 8868000 14532000 62305 11783000 9761800 13100000 11259000 9803900 9606800 10562000 11399000 8256400 13550000 672750 12234000 9392900 13190000 11291000 10157000 9909200 10284000 10941000 6 6 3 6 6 6 6 6 6 6 6 3282300 5117900 3101.7 4251000 2740800 5525000 3570500 3577600 3524000 3559300 3717700 3055700 4772300 215770 4417000 2645700 5506200 3576900 3735200 3593900 3476900 3580400 2 2 1 2 2 2 2 2 2 2 2 5585700 9414100 59204 7531600 7021100 7575100 7688900 6226300 6082800 7003000 7681200 5200600 8777400 456980 7817100 6747200 7684000 7714500 6421800 6315200 6807500 7360300 4 4 2 4 4 4 4 4 4 4 4 3235100000 1323300000 1911900000 21167 1019 19455 109691;109692;109693;109694;109695 132989;132990;132991;132992;132993;132994;132995 132994 1320 7 VSPETVDSVIMGNVLQSSSDAIYLAR Unmodified 2750.3797 0.37966024 1019 P42765 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 81.032 81.035 3 1.4878E-61 26523 20211116_3445_TMUAki_TMT10x_S_F6 231.89 203.24 2868100 4888300 39026 4821600 3290900 4081800 3615300 2538400 2246100 2808500 3744900 2670600 4561100 263550 4912400 3165000 4169200 3607800 2666900 2398100 2731800 3566100 4 4 3 4 4 4 4 4 4 4 4 1683600 2914600 7328.9 2856800 1832800 2793500 2106200 1435000 1294800 1631400 2222500 1567500 2719400 131970 2917600 1763700 2819200 2097000 1533500 1385600 1585200 2115200 2 2 1 2 2 2 2 2 2 2 2 1184500 1973700 31698 1964700 1458100 1288300 1509100 1103400 951280 1177100 1522400 1103100 1841600 131580 1994800 1401300 1350000 1510800 1133400 1012400 1146600 1450900 2 2 2 2 2 2 2 2 2 2 2 993050000 679760000 313300000 21168 1019 19455 109696;109697;109698 132996;132997;132998;132999 132998 4 VSPLTPK Unmodified 740.44324 0.44324019 2066 Q7LBC6;Q7LBC6-2;Q7LBC6-3 KDM3B Lysine-specific demethylase 3B yes no 0 0 0 0 By MS/MS 7 0 1 1 38.519 39.179 2 0.035378 11341 20211116_3446_TMUAki_TMT10x_S_F7 77.058 41.424 190290 326090 2713.3 321640 211890 169900 199670 178580 189010 159160 241140 177200 304260 18608 326170 203030 182640 202840 180550 194600 156250 231010 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 190290 326090 2713.3 321640 211890 169900 199670 178580 189010 159160 241140 177200 304260 18608 326170 203030 182640 202840 180550 194600 156250 231010 1 1 1 1 1 1 1 1 1 1 1 5774000 0 5774000 21169 2066 19456 109699 133000 133000 1 VSQFLVDGVCTVANCVGK Unmodified 1951.9496 0.94956769 2177 Q8N0X7 SPG20 Spartin yes yes 0 0 0 0 By MS/MS 2 0 1 1 79.013 78.989 3 0.099261 26057 20211116_3440_TMUAki_TMT10x_S_F2 28.813 18.179 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21170 2177 19457 109700 133001 133001 1 VSQMAQYFEPLTLAAVGAASK Unmodified 2181.114 0.11399049 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By matching By MS/MS 3.33 0.471 2 1 1 2 80.781 80.742 3 3.3984E-10 29518 20211116_3441_TMUAki_TMT10x_S_F3 106.35 90.048 11841000 19033000 50172 19391000 15316000 10272000 15063000 5273100 4828000 6931900 11767000 11024000 17762000 930540 19621000 14673000 10915000 14975000 5663300 5605700 6701700 11137000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11841000 19033000 50172 19391000 15316000 10272000 15063000 5273100 4828000 6931900 11767000 11024000 17762000 930540 19621000 14673000 10915000 14975000 5663300 5605700 6701700 11137000 3 3 2 3 3 3 3 3 3 3 3 2840900000 926140000 1914800000 21171 3293 19458 109701;109702;109703 133002;133003;133004 133002 3 VSQMLILTPFQGQGHGAQLLETVHR Oxidation (M) 2775.449 0.44901763 142 O14929;O14929-2 HAT1 Histone acetyltransferase type B catalytic subunit yes no 0 0 1 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 62.888 62.712 4 7.8675E-17 19562 20211116_3440_TMUAki_TMT10x_S_F2 123.65 104.86 27619000 45116000 128760 39586000 28014000 31857000 30958000 22576000 26412000 28073000 33585000 25713000 42077000 1545000 40659000 26906000 32722000 31108000 23586000 27323000 27191000 32176000 5 5 2 5 5 5 5 5 5 5 5 7846500 15457000 109570 12149000 9170300 14670000 10480000 7046200 9300600 8276900 9688600 7306700 14410000 470550 12666000 8832500 14618000 10526000 7585700 9527200 8033000 9334200 2 2 1 2 2 2 2 2 2 2 2 19773000 29659000 19192 27436000 18843000 17187000 20478000 15529000 17112000 19796000 23896000 18406000 27667000 1074500 27993000 18073000 18104000 20582000 16001000 17796000 19158000 22842000 3 3 1 3 3 3 3 3 3 3 3 5498600000 3491700000 2006900000 21172 142 19459 109704;109705;109706 133005;133006;133007;133008;133009 133008 101 5 VSQMLILTPFQGQGHGAQLLETVHR Unmodified 2759.4541 0.45410301 142 O14929;O14929-2 HAT1 Histone acetyltransferase type B catalytic subunit yes no 0 0 0 0 By matching By MS/MS 4 0 2 1 1 70.268 70.215 4 3.7324E-17 23185 20211116_3442_TMUAki_TMT10x_S_F4 133.76 120.7 6753900 12196000 0 11209000 9110300 6733700 7666000 7410900 6891800 7350700 8625700 6287800 11376000 504800 11438000 8693400 7151200 7827500 7499000 7106700 7181500 8267300 3 3 0 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6753900 12196000 0 11209000 9110300 6733700 7666000 7410900 6891800 7350700 8625700 6287800 11376000 504800 11438000 8693400 7151200 7827500 7499000 7106700 7181500 8267300 3 3 0 3 3 3 3 3 3 3 3 1590600000 992900000 597710000 21173 142 19459 109707;109708 133010;133011;133012 133011 3 VSQPIEGHAASFAQFK Unmodified 1715.8631 0.86311917 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS By MS/MS 7 0.707 2 4 2 4 4 50.115 50.428 3;4 4.5982E-36 15462 20211116_3435_TMUAki_TMT10x_P_F7 213.71 182.62 48395000 83071000 714570 97235000 72442000 81297000 49029000 69322000 71704000 60543000 70474000 45065000 77567000 4871700 97957000 68906000 83534000 51659000 70824000 71911000 59491000 68022000 10 10 7 10 10 10 10 10 10 10 10 23451000 37677000 355530 43939000 51593000 63017000 32515000 32370000 32725000 28971000 33407000 21837000 35180000 2536100 44668000 49003000 62332000 33986000 34357000 33307000 28435000 32206000 5 5 3 5 5 5 5 5 5 5 5 24944000 45394000 359030 53296000 20849000 18280000 16514000 36952000 38979000 31572000 37067000 23228000 42387000 2335600 53289000 19903000 21202000 17673000 36467000 38603000 31057000 35816000 5 5 4 5 5 5 5 5 5 5 5 7807700000 4566200000 3241500000 21174 1471 19460 109709;109710;109711;109712;109713;109714;109715;109716 133013;133014;133015;133016;133017;133018;133019;133020;133021;133022 133014 10 VSQWWER Unmodified 989.47191 0.47191456 3047 Q9P035 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes yes 0 0 0 0 By MS/MS 7 0 1 1 50.957 51.63 2 0.040451 15938 20211116_3435_TMUAki_TMT10x_P_F7 74.301 35.483 4085900 6293800 78292 7723800 8781400 8208600 6943700 3820000 3555700 3292700 5426300 3804900 5878200 477480 7785800 8378600 8233900 7034500 4089600 3831900 3237500 5176700 1 1 1 1 1 1 1 1 1 1 1 4085900 6293800 78292 7723800 8781400 8208600 6943700 3820000 3555700 3292700 5426300 3804900 5878200 477480 7785800 8378600 8233900 7034500 4089600 3831900 3237500 5176700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 297780000 297780000 0 21175 3047 19461 109717 133023 133023 1 VSRDTLYEAVR Unmodified 1307.6834 0.68336389 1381 P62906 RPL10A 60S ribosomal protein L10a yes yes 0 0 0 1 By MS/MS By MS/MS 4.83 0.687 2 3 1 5 1 38.056 38.088 2;3 2.6515E-11 8788 20211116_3444_TMUAki_TMT10x_S_F5 168.82 127.77 8805100 12967000 175120 18247000 20087000 17034000 9816900 12543000 13079000 9783200 12119000 8199700 12120000 1050500 18224000 19013000 17327000 10596000 12897000 13129000 9668500 11720000 8 8 7 8 8 8 8 8 8 8 8 6337700 9223800 108500 12875000 18329000 15758000 8390300 9059900 9460200 7100400 8543400 5901900 8620400 793830 12920000 17332000 15725000 9063500 9490900 9544800 7015300 8269900 6 6 5 6 6 6 6 6 6 6 6 2467300 3743600 66612 5372300 1757500 1275600 1426600 3482800 3618600 2682800 3575600 2297800 3499300 256700 5304300 1680900 1601800 1532200 3405700 3583800 2653200 3450600 2 2 2 2 2 2 2 2 2 2 2 1166100000 808660000 357480000 21176 1381 19462 109718;109719;109720;109721;109722;109723 133024;133025;133026;133027;133028;133029;133030;133031;133032 133032 9 VSRPENEQLR Unmodified 1226.6367 0.63674805 2237 Q8ND56;Q8ND56-3;Q8ND56-2 LSM14A Protein LSM14 homolog A yes no 0 0 0 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 27.317 27.056 3 0.0002328 7986 20211116_3441_TMUAki_TMT10x_S_F3 108.98 89.198 188620 333560 0 274080 208720 297400 219730 158150 196860 176080 214170 175590 311020 12304 284150 200170 298410 221590 168360 201890 171230 206070 2 2 0 2 2 2 2 2 2 2 2 96863 161830 0 144220 121110 164790 98758 78351 102880 96988 109660 90165 150940 5328.5 148680 115370 164670 101470 84583 104730 93956 105570 1 1 0 1 1 1 1 1 1 1 1 91753 171730 0 129860 87604 132610 120970 79803 93976 79095 104510 85427 160080 6975.8 135480 84800 133740 120120 83782 97159 77277 100500 1 1 0 1 1 1 1 1 1 1 1 7089600 1431400 5658200 21177 2237 19463 109724;109725 133033;133034 133034 2 VSSAEGAAKEEPK Unmodified 1301.6463 0.64630969 501 P05114 HMGN1 Non-histone chromosomal protein HMG-14 yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 32.789 32.682 3 1.0629E-05 7504 20211116_3431_TMUAki_TMT10x_P_F4 101.75 74.967 1722400 2896100 13021 2336600 2125300 3384100 2358700 2066100 2385200 2142300 2369700 1603800 2700300 160570 2438900 2044500 3353300 2381100 2169500 2424800 2089100 2286400 2 2 2 2 2 2 2 2 2 2 2 1049800 1706300 4510.5 1402500 1343200 2057500 1296100 768530 963660 955220 1128800 977520 1591100 95349 1462000 1287000 2026700 1306900 852030 1000800 925230 1083800 1 1 1 1 1 1 1 1 1 1 1 672540 1189700 8510.3 934130 782180 1326600 1062500 1297600 1421500 1187100 1240900 626260 1109200 65225 976890 757550 1326600 1074200 1317400 1424000 1163900 1202600 1 1 1 1 1 1 1 1 1 1 1 87872000 63772000 24100000 21178 501 19464 109726;109727 133035;133036 133035 2 VSSFEEK Unmodified 824.3916 0.39159855 989 P40926;P40926-2 MDH2 Malate dehydrogenase, mitochondrial yes no 0 0 0 0 By MS/MS 4 0 1 1 38.723 38.904 2 0.05915 10339 20211116_3442_TMUAki_TMT10x_S_F4 65.038 18.472 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21179 989 19465 109728 133037 133037 1 VSSQSFSEIER Unmodified 1267.6044 0.60444487 2203 Q8N6H7;Q8N6H7-2 ARFGAP2 ADP-ribosylation factor GTPase-activating protein 2 yes no 0 0 0 0 By MS/MS 3 0 1 1 41.36 41.415 2 2.4823E-06 12507 20211116_3430_TMUAki_TMT10x_P_F3 127.17 100.78 291220 439180 0 595400 1010200 712490 395860 336390 404910 313450 416920 271100 410380 27165 598130 952720 710170 433940 360310 411950 307080 401820 1 1 0 1 1 1 1 1 1 1 1 291220 439180 0 595400 1010200 712490 395860 336390 404910 313450 416920 271100 410380 27165 598130 952720 710170 433940 360310 411950 307080 401820 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27797000 27797000 0 21180 2203 19466 109729 133038 133038 1 VSSVFKDEATVR Unmodified 1336.6987 0.69867961 1040 P46060 RANGAP1 Ran GTPase-activating protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 43.55 43.77 3 3.7135E-10 11249 20211116_3445_TMUAki_TMT10x_S_F6 159.58 131 9090200 13466000 42764 15888000 17624000 15473000 9485200 11090000 11344000 9361600 12464000 8464000 12574000 891690 16031000 16695000 15690000 10104000 11445000 11499000 9214300 11989000 4 4 3 4 4 4 4 4 4 4 4 5694000 8389800 41178 9869600 14280000 12722000 6401900 7085700 7135000 5898300 7625100 5301900 7834100 630690 10007000 13497000 12657000 6928300 7453100 7243900 5809500 7340400 2 2 2 2 2 2 2 2 2 2 2 3396200 5076200 1586.3 6018600 3344400 2751600 3083300 4004600 4209400 3463300 4839000 3162100 4740200 261000 6024500 3199000 3032800 3176100 3992100 4255400 3404700 4648500 2 2 1 2 2 2 2 2 2 2 2 1455100000 986560000 468510000 21181 1040 19467 109730;109731;109732;109733;109734 133039;133040;133041;133042;133043 133042 5 VSTALSCLLGLPLR Unmodified 1498.8541 0.85413439 88 O00442;O00442-2 RTCA RNA 3'-terminal phosphate cyclase yes no 0 0 0 0 By MS/MS By matching 7 0 2 1 1 80.363 80.393 2 1.9831E-13 27949 20211116_3435_TMUAki_TMT10x_P_F7 141.25 120.25 2978600 4541000 131270 4432400 2723500 5721300 3690500 2786200 2378200 3042700 3326000 2774400 4236800 365720 4548800 2643700 5683000 3652300 2988700 2510500 2961000 3179100 1 1 1 1 1 1 1 1 1 1 1 2978600 4541000 131270 4432400 2723500 5721300 3690500 2786200 2378200 3042700 3326000 2774400 4236800 365720 4548800 2643700 5683000 3652300 2988700 2510500 2961000 3179100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 676170000 316810000 359360000 21182 88 19468 109735;109736 133044 133044 1 VSTAVLSITAK Unmodified 1088.6441 0.64412484 2575 Q99460;Q99460-2 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 2 4 3 3 59.857 59.667 2;3 5.3162E-19 18228 20211116_3440_TMUAki_TMT10x_S_F2 232.41 165.37 16687000 27490000 127930 23669000 20442000 23051000 20144000 21332000 19230000 21149000 22484000 15538000 25637000 1549900 24407000 19600000 23483000 20420000 21770000 19719000 20662000 21588000 5 5 4 5 5 5 5 5 5 5 5 4676600 6960200 27992 6211200 5504500 9660800 6214400 5525000 4789900 5739600 5722800 4354600 6491800 425400 6440900 5297500 9536000 6222300 5832600 4968300 5596800 5491700 1 1 1 1 1 1 1 1 1 1 1 12010000 20530000 99937 17457000 14937000 13391000 13930000 15807000 14441000 15409000 16761000 11183000 19145000 1124500 17966000 14303000 13947000 14198000 15938000 14751000 15066000 16097000 4 4 3 4 4 4 4 4 4 4 4 965820000 287930000 677890000 21183 2575 19469 109737;109738;109739;109740;109741;109742 133045;133046;133047;133048;133049;133050;133051 133049 7 VSTLPAITLK Unmodified 1041.6434 0.64339656 536 P07339 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 4 2 2 63.493 63.229 2;3 2.3552E-09 19694 20211116_3440_TMUAki_TMT10x_S_F2 179.8 104.49 16353000 26207000 514510 27593000 24212000 26013000 19891000 21974000 22206000 20441000 23059000 15230000 24460000 1945300 28028000 23138000 26507000 20474000 22499000 22520000 20027000 22217000 4 4 4 4 4 4 4 4 4 4 4 8361700 12480000 258290 14248000 14473000 17778000 11131000 11306000 11754000 10554000 12080000 7787500 11652000 1019600 14463000 13809000 17748000 11485000 11799000 11942000 10338000 11643000 2 2 2 2 2 2 2 2 2 2 2 7991300 13728000 256210 13346000 9738800 8234600 8759400 10668000 10452000 9887100 10979000 7442600 12808000 925790 13565000 9328900 8758800 8988600 10700000 10578000 9688400 10575000 2 2 2 2 2 2 2 2 2 2 2 1623300000 1040800000 582520000 21184 536 19470 109743;109744;109745;109746 133052;133053;133054;133055 133055 4 VSTQKTSEITPQK Unmodified 1445.7726 0.77257283 2330 Q8WZ42-9;Q8WZ42-7;Q8WZ42-12;Q8WZ42;Q8WZ42-3;Q8WZ42-10;Q8WZ42-5;Q8WZ42-11;Q8WZ42-4;Q8WZ42-2;Q8WZ42-8;Q8WZ42-13 TTN Titin yes no 0 0 0 1 By MS/MS By MS/MS 5.25 0.829 1 1 2 3 1 53.97 54.111 4 0.077823 15539 20211116_3445_TMUAki_TMT10x_S_F6 39.394 11.981 8176300 13133000 0 13961000 11571000 10979000 9724900 9669400 9960500 9030400 10256000 7612700 12257000 700260 14139000 11046000 11339000 9968200 9878200 10133000 8845900 9884500 2 2 0 2 2 2 2 2 2 2 2 4376600 6838900 0 7320800 8164800 8030100 5959100 5264200 5332200 4662600 5293300 4074900 6383300 393370 7445000 7771900 8074700 6140500 5473900 5450700 4578500 5107500 1 1 0 1 1 1 1 1 1 1 1 3799600 6293700 0 6639900 3405800 2949000 3765800 4405200 4628200 4367800 4962800 3537800 5874000 306890 6694100 3274500 3264600 3827700 4404300 4682600 4267400 4777100 1 1 0 1 1 1 1 1 1 1 1 2415300000 1556000000 859290000 21185 2330 19471 109747;109748;109749;109750 133056 133056 1 VSTVFWK Unmodified 865.46979 0.46978929 1684 Q14152;Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A yes no 0 0 0 0 By MS/MS 3 0 1 1 62.234 61.96 2 0.0074808 20964 20211116_3430_TMUAki_TMT10x_P_F3 132.09 84.187 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21186 1684 19472 109751 133057 133057 1 VSVEYTEK Unmodified 953.47058 0.47057715 2383 Q92979 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 39.276 39.457 2 0.0029408 10580 20211116_3442_TMUAki_TMT10x_S_F4 103.42 66.26 448430 679200 2587.3 790770 483670 359350 445610 478850 462050 444000 580490 417560 634180 40083 792380 462960 395380 454500 479790 473540 435060 556310 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 448430 679200 2587.3 790770 483670 359350 445610 478850 462050 444000 580490 417560 634180 40083 792380 462960 395380 454500 479790 473540 435060 556310 1 1 1 1 1 1 1 1 1 1 1 21420000 0 21420000 21187 2383 19473 109752 133058 133058 1 VSVFFGGLSIK Unmodified 1152.6543 0.6542956 63 O00148;O00148-2;O00148-3 DDX39A ATP-dependent RNA helicase DDX39A yes no 0 0 0 0 By MS/MS By MS/MS 6 0 3 1 2 78.54 78.519 2 0.00012426 25535 20211116_3445_TMUAki_TMT10x_S_F6 94.465 49.153 4007800 6598600 1466.2 6491700 4870400 8748000 5442200 5045000 4362600 5357700 4932300 3731700 6156800 345720 6663900 4684400 8689500 5456900 5325700 4505600 5219800 4740400 1 1 1 1 1 1 1 1 1 1 1 4007800 6598600 1466.2 6491700 4870400 8748000 5442200 5045000 4362600 5357700 4932300 3731700 6156800 345720 6663900 4684400 8689500 5456900 5325700 4505600 5219800 4740400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 734380000 427820000 306550000 21188 63 19474 109753;109754;109755 133059;133060 133060 2 VSVGEFVGEGEGK Unmodified 1292.6248 0.62484596 445 O95793;O95793-2;O95793-3 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 56.901 56.762 3 6.352E-06 17602 20211116_3442_TMUAki_TMT10x_S_F4 96.059 74.808 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21189 445 19475 109756;109757 133061;133062 133062 2 VSVHVIEGDHR Unmodified 1246.6418 0.64183343 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 3.8 1.17 1 1 1 2 4 1 30.84 30.726 3;4 6.4049E-07 6966 20211116_3433_TMUAki_TMT10x_P_F5 131.54 114.31 1423700 2120900 16546 2096300 1575300 1906300 1565000 1133600 1192500 1588000 1499700 1325700 1978900 124170 2137400 1510500 1936300 1576400 1205100 1240400 1532200 1437200 5 5 3 5 5 5 5 5 5 5 5 664320 921040 8853.1 992900 802550 1089700 708440 569440 588060 772390 718090 618580 859700 61827 1009300 767470 1092500 719790 611300 608130 746000 688690 3 3 2 3 3 3 3 3 3 3 3 759410 1199800 7692.9 1103400 772780 816540 856550 564150 604470 815610 781630 707080 1119200 62344 1128200 743030 843860 856650 593850 632270 786200 748520 2 2 1 2 2 2 2 2 2 2 2 262670000 231030000 31632000 21190 1092 19476 109758;109759;109760;109761;109762 133063;133064;133065;133066;133067 133064 5 VSVIQFLEAPIGDEDAEEAAAEK Unmodified 2430.1802 0.18021537 1686 Q14160;Q14160-3;Q14160-2 SCRIB Protein scribble homolog yes no 0 0 0 0 By matching By MS/MS 1 0 2 1 1 80.191 80.173 3 1.7653E-07 28292 20211116_3439_TMUAki_TMT10x_S_F1 88.79 78.869 2182300 3946300 9559.6 3728100 2895000 2177100 2823900 1821600 1880700 2382800 2884300 2032100 3681500 199820 3795500 2774700 2305500 2838900 1886800 1990100 2304000 2751300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2182300 3946300 9559.6 3728100 2895000 2177100 2823900 1821600 1880700 2382800 2884300 2032100 3681500 199820 3795500 2774700 2305500 2838900 1886800 1990100 2304000 2751300 1 1 1 1 1 1 1 1 1 1 1 780950000 361600000 419350000 21191 1686 19478 109763;109764 133068 133068 1 VSVNGAVVLEEPVGELR Unmodified 1765.9574 0.95741349 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 0 By MS/MS By MS/MS 3.17 0.687 1 3 2 3 3 66.331 66.089 2;3 2.5273E-53 20958 20211116_3431_TMUAki_TMT10x_P_F4 274.45 224.41 9442800 15503000 63934 14027000 10588000 17473000 11388000 12374000 11509000 11531000 12737000 8792200 14460000 805430 14466000 10173000 17473000 11513000 12813000 11746000 11297000 12249000 6 6 3 6 6 6 6 6 6 6 6 8026700 12957000 45120 11680000 8471100 15814000 9606700 10165000 9518000 9582500 10623000 7473500 12086000 660670 12068000 8150300 15728000 9682400 10603000 9726100 9382800 10214000 5 5 2 5 5 5 5 5 5 5 5 1416100 2545200 18814 2346800 2116900 1658600 1781300 2208700 1990700 1948800 2113700 1318700 2374200 144750 2397800 2022500 1744500 1830800 2210100 2020400 1914000 2035200 1 1 1 1 1 1 1 1 1 1 1 1643200000 1288100000 355110000 21192 157 19479 109765;109766;109767;109768;109769;109770 133069;133070;133071;133072;133073;133074;133075;133076 133073 8 VSVPSNLSYGEWLHGFEK Unmodified 2048.0003 0.0003409361 2107 Q86UP2;Q86UP2-3;Q86UP2-4;Q86UP2-2 KTN1 Kinectin yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 3 1 74.272 74.306 3 1.5857E-24 23549 20211116_3447_TMUAki_TMT10x_S_F8 178.06 154.73 6903400 11611000 230830 12397000 7887600 9277500 8518100 4749200 3826100 4759800 7489800 6429500 10837000 801250 12545000 7592900 9541900 8462100 5057500 4227800 4648200 7111700 2 2 2 2 2 2 2 2 2 2 2 3149100 5290300 69087 5466300 3295800 5227400 3682100 2502400 1914300 2382900 3331600 2932600 4937100 327520 5560500 3174000 5278800 3660000 2678200 2075100 2332200 3170000 1 1 1 1 1 1 1 1 1 1 1 3754400 6320800 161740 6930800 4591900 4050100 4836000 2246800 1911900 2376800 4158200 3496900 5900300 473730 6984400 4418800 4263100 4802100 2379300 2152700 2316000 3941800 1 1 1 1 1 1 1 1 1 1 1 1909300000 1375500000 533830000 21193 2107 19480 109771;109772;109773;109774 133077;133078;133079 133079 3 VSVVPDEVATIAAEVTSFSNR Unmodified 2190.1168 0.11682726 2250 Q8NFF5;Q8NFF5-3;Q8NFF5-2;Q8NFF5-4;Q8NFF5-5 FLAD1 FAD synthase;Molybdenum cofactor biosynthesis protein-like region;FAD synthase region yes no 0 0 0 0 By MS/MS By MS/MS 4.8 2.07 3 2 2 2 2 2 2 7 8 81.66 81.661 3 3.7379E-76 28920 20211116_3446_TMUAki_TMT10x_S_F7 267.6 245.97 10725000 17719000 284040 18227000 12309000 15953000 13536000 9542100 9613100 10850000 13644000 9987800 16536000 1154500 18525000 11849000 16248000 13544000 10064000 10094000 10543000 13037000 13 13 11 13 13 13 13 13 13 13 13 5794900 9355100 82829 9542600 6249200 10495000 7517900 5083800 5129300 5749700 7194700 5396100 8730000 542440 9736100 6027500 10511000 7485500 5461900 5396000 5588000 6876500 6 6 4 6 6 6 6 6 6 6 6 4929800 8363900 201210 8684500 6059700 5457600 6017800 4458300 4483900 5100800 6449000 4591700 7805600 612070 8788700 5821400 5736400 6058800 4602600 4698400 4955200 6160300 7 7 7 7 7 7 7 7 7 7 7 6277700000 2944000000 3333700000 21194 2250 19481 109775;109776;109777;109778;109779;109780;109781;109782;109783;109784;109785;109786;109787;109788;109789 133080;133081;133082;133083;133084;133085;133086;133087;133088;133089;133090;133091;133092;133093;133094 133092 15 VSYARPSSASIR Unmodified 1292.6837 0.68369824 815;1717 P26378;P26378-4;P26378-2;P26378-5;P26378-1;P26378-3;Q12926;Q12926-2;Q14576-2;Q14576 ELAVL4;ELAVL2;ELAVL3 ELAV-like protein 4;ELAV-like protein 2;ELAV-like protein 3 no no 0 0 0 1 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 30.931 30.824 3 5.0142E-06 6346 20211116_3428_TMUAki_TMT10x_P_F1 110.98 89.112 1139800 1695200 45391 1868400 3331700 2250000 1242600 1568800 1651600 1002500 1547900 1061600 1582400 167500 1899600 3144800 2253300 1382300 1612500 1658600 1002500 1496500 4 4 4 4 4 4 4 4 4 4 4 734830 1046900 38190 1122300 2848100 1922800 866990 1071100 1133100 655840 890090 684490 977120 126110 1151600 2683400 1890300 991260 1119600 1132500 657640 866160 2 2 2 2 2 2 2 2 2 2 2 405010 648330 7201.6 746080 483550 327150 375570 497690 518450 346710 657860 377150 605330 41390 747950 461370 362950 391020 492890 526130 344830 630290 2 2 2 2 2 2 2 2 2 2 2 138960000 98261000 40695000 21195 815;1717 19482 109790;109791;109792;109793 133095;133096;133097;133098 133095 4 VSYARPSSASIRDANLYVSGLPK Unmodified 2450.2918 0.29177193 815;1717 P26378;P26378-4;P26378-2;P26378-5;P26378-1;P26378-3;Q12926;Q12926-2;Q14576-2;Q14576 ELAVL4;ELAVL2;ELAVL3 ELAV-like protein 4;ELAV-like protein 2;ELAV-like protein 3 no no 0 0 0 2 By MS/MS By matching 3 0 2 1 1 53.383 53.121 4 1.0221E-10 17350 20211116_3430_TMUAki_TMT10x_P_F3 104.81 90.502 1523100 2509300 21130 2167800 2338400 3354400 1953400 2373700 1801500 1667700 2085200 1418300 2340100 157390 2253400 2233800 3322000 1996900 2441700 1849400 1657900 2002700 1 1 1 1 1 1 1 1 1 1 1 1523100 2509300 21130 2167800 2338400 3354400 1953400 2373700 1801500 1667700 2085200 1418300 2340100 157390 2253400 2233800 3322000 1996900 2441700 1849400 1657900 2002700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 332660000 186280000 146390000 21196 815;1717 19483 109794;109795 133099 133099 1 VSYARPSSEVIKDANLYISGLPR Unmodified 2534.3493 0.34928681 1825 Q15717;Q15717-2 ELAVL1 ELAV-like protein 1 yes no 0 0 0 2 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 64.753 64.441 4 1.7056E-84 21479 20211116_3429_TMUAki_TMT10x_P_F2 290.59 271.56 7260700 14140000 34497 8647000 10719000 22491000 13007000 17311000 16060000 14601000 13772000 6760600 13173000 682540 9416400 10338000 21942000 13168000 17781000 16123000 14372000 13356000 2 2 2 2 2 2 2 2 2 2 2 5432500 10846000 32232 5745200 7995400 20276000 10976000 14699000 13394000 11786000 10847000 5058400 10102000 516330 6438600 7743200 19634000 11053000 15139000 13430000 11631000 10542000 1 1 1 1 1 1 1 1 1 1 1 1828100 3293300 2264.5 2901900 2723700 2215300 2030600 2611800 2666000 2815400 2925200 1702200 3071600 166220 2977800 2594300 2308000 2115600 2641600 2693600 2741300 2813900 1 1 1 1 1 1 1 1 1 1 1 5933500000 2646600000 3287000000 21197 1825 19484 109796;109797;109798;109799 133100;133101 133100 2 VSYFAVFDGHGGIR Unmodified 1523.7521 0.75211216 2771 Q9H0C8 ILKAP Integrin-linked kinase-associated serine/threonine phosphatase 2C yes yes 0 0 0 0 By MS/MS By MS/MS 2.8 2.64 2 2 1 3 2 61.385 61.356 3 1.6481E-09 20772 20211116_3439_TMUAki_TMT10x_S_F1 131.36 112.26 13175000 21972000 136460 20463000 16301000 23792000 15345000 17903000 16419000 15717000 17244000 12268000 20496000 1186400 21032000 15609000 23900000 15648000 18434000 16686000 15440000 16610000 6 6 4 6 6 6 6 6 6 6 6 7780900 12658000 51306 11319000 9907400 18232000 9816600 10971000 9681300 9199600 9921400 7244600 11806000 646090 11745000 9495500 17984000 9958000 11468000 9863500 9057800 9563400 3 3 2 3 3 3 3 3 3 3 3 5394000 9313500 85149 9144900 6393100 5559700 5528100 6932100 6737600 6517000 7323100 5023000 8689900 540320 9287600 6113400 5915800 5690100 6966400 6822200 6381900 7046200 3 3 2 3 3 3 3 3 3 3 3 1550700000 941240000 609500000 21198 2771 19485 109800;109801;109802;109803;109804 133102;133103;133104;133105;133106;133107;133108;133109 133107 8 VSYGIGDEEHDQEGR Unmodified 1689.7231 0.72305646 829 P27695 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 2.4 1.5 2 1 1 1 2 3 33.445 33.387 3 4.4555E-61 7428 20211116_3428_TMUAki_TMT10x_P_F1 300.51 285.53 1267000 1990200 35584 2712300 4330700 2293200 1605100 1454000 2064000 1155500 2055900 1180000 1859800 181120 2709700 4086100 2343200 1784800 1511800 2079400 1140800 1983500 5 5 5 5 5 5 5 5 5 5 5 643250 998180 16578 1376900 3719100 1728100 943500 837160 1182300 619650 1057000 599050 932830 111860 1383200 3497300 1718800 1109600 889620 1187900 614150 1023500 2 2 2 2 2 2 2 2 2 2 2 623770 992050 19006 1335300 611640 565120 661550 616860 881660 535850 998910 580930 926970 69258 1326500 588870 624370 675240 622150 891470 526680 959980 3 3 3 3 3 3 3 3 3 3 3 710120000 577220000 132900000 21199 829 19486 109805;109806;109807;109808;109809 133110;133111;133112;133113;133114 133110 5 VSYIPDEQIAQGPENGR Unmodified 1871.9014 0.90135517 3032 Q9NZI8 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 4 2 51.897 51.778 2;3 1.3107E-60 16756 20211116_3430_TMUAki_TMT10x_P_F3 292.12 246.76 5164700 8378400 23746 9985200 8209700 10117000 6501300 7609400 7609100 6549300 7650200 4808800 7823900 463330 10075000 7828400 10242000 6718200 7831500 7693900 6440100 7378600 4 4 2 4 4 4 4 4 4 4 4 3720300 6070700 23746 6900600 6943200 8958500 5296600 5155400 5236900 4461500 5300800 3464100 5667700 367130 7011900 6617000 8914000 5456800 5412800 5332500 4385900 5111500 3 3 2 3 3 3 3 3 3 3 3 1444400 2307600 0 3084700 1266500 1158400 1204700 2454000 2372200 2087800 2349500 1344700 2156200 96193 3063200 1211400 1328000 1261400 2418700 2361400 2054200 2267100 1 1 0 1 1 1 1 1 1 1 1 1523500000 999260000 524260000 21200 3032 19487 109810;109811;109812;109813;109814;109815 133115;133116;133117;133118;133119 133116 5 VSYIPDEQIAQGPENGRR Unmodified 2028.0025 0.0024662011 3032 Q9NZI8 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 1.12 2 2 2 2 4 4 43.447 43.487 3 1.833E-50 12079 20211116_3442_TMUAki_TMT10x_S_F4 230.07 192.49 12533000 21135000 80291 24697000 26847000 29250000 16444000 25555000 29998000 19603000 21891000 11668000 19734000 1009800 25011000 25465000 29434000 17643000 25991000 29637000 19391000 21369000 10 10 5 10 10 10 10 10 10 10 10 7448200 12149000 13489 13785000 23804000 25441000 13765000 15296000 17650000 10950000 12521000 6932600 11342000 555420 14122000 22553000 24971000 14608000 15934000 17604000 10873000 12237000 5 5 1 5 5 5 5 5 5 5 5 5084900 8986300 66802 10911000 3042900 3808500 2678400 10259000 12348000 8653500 9370500 4735100 8392400 454350 10889000 2912500 4462900 3035200 10057000 12033000 8517600 9131500 5 5 4 5 5 5 5 5 5 5 5 4955800000 2972000000 1983800000 21201 3032 19488 109816;109817;109818;109819;109820;109821;109822;109823 133120;133121;133122;133123;133124;133125;133126;133127;133128;133129;133130 133128 11 VSYLVFDEADR Unmodified 1312.6299 0.62993134 2125 Q86XP3;Q86XP3-2 DDX42 ATP-dependent RNA helicase DDX42 yes no 0 0 0 0 By matching By MS/MS 2.5 0.5 1 1 1 1 64.538 64.163 2 2.9731E-05 22895 20211116_3441_TMUAki_TMT10x_S_F3 104.82 83.317 2509700 4278500 0 4117200 2596100 2622400 2705000 3195800 2702400 2953600 3418600 2336800 3991700 204740 4189200 2491700 2776600 2738000 3213100 2774800 2894600 3275700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2509700 4278500 0 4117200 2596100 2622400 2705000 3195800 2702400 2953600 3418600 2336800 3991700 204740 4189200 2491700 2776600 2738000 3213100 2774800 2894600 3275700 1 1 0 1 1 1 1 1 1 1 1 496850000 274720000 222120000 21202 2125 19489 109824;109825 133131 133131 1 VTAEVVLAHLGGGSTSR Unmodified 1652.8846 0.8845829 494 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 2.36 2 1 2 1 4 2 57.362 57.211 3 1.4585E-11 16907 20211116_3428_TMUAki_TMT10x_P_F1 137.44 120.37 5328800 8685600 68301 8157600 5581400 7289300 5383500 6813300 6564600 6271100 6959600 4961900 8102600 484080 8346400 5349300 7468800 5507600 6935100 6640700 6147000 6701400 3 3 1 3 3 3 3 3 3 3 3 2052100 3256700 0 2766600 2236000 3846400 2273700 2559600 2419200 2268400 2547400 1910600 3037000 157430 2873200 2143900 3822900 2308800 2658600 2459300 2227400 2453400 1 1 0 1 1 1 1 1 1 1 1 3276600 5428900 68301 5391000 3345400 3443000 3109800 4253800 4145400 4002700 4412200 3051300 5065600 326650 5473200 3205400 3645800 3198800 4276500 4181400 3919500 4248000 2 2 1 2 2 2 2 2 2 2 2 505510000 278720000 226790000 21203 494 19490 109826;109827;109828;109829;109830;109831 133132;133133;133134;133135;133136;133137;133138 133132 7 VTAIHIDPATHR Unmodified 1329.7153 0.71533272 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 2 4 4 2 30 30.017 3;4 7.2794E-14 7878 20211116_3433_TMUAki_TMT10x_P_F5 179.72 164.18 5545400 9095900 100120 8343800 7757200 7850400 6287600 5912400 5950900 6219800 6667800 5163700 8484700 529640 8557800 7403600 7984300 6444200 6118300 6094200 6061900 6410000 7 7 4 7 7 7 7 7 7 7 7 2885500 4757400 16644 4321000 4705900 5247500 3302500 3424800 3267600 3554700 3531800 2686300 4437500 225820 4452800 4474400 5247700 3422100 3577900 3335100 3466400 3398900 4 4 1 4 4 4 4 4 4 4 4 2660000 4338500 83480 4022800 3051300 2602900 2985100 2487600 2683300 2665100 3135900 2477300 4047100 303810 4105000 2929200 2736600 3022100 2540400 2759100 2595600 3011100 3 3 3 3 3 3 3 3 3 3 3 2081200000 1338000000 743260000 21204 1092 19491 109832;109833;109834;109835;109836;109837 133139;133140;133141;133142;133143;133144;133145 133141 7 VTAQGPGLEPSGNIANK Unmodified 1651.8529 0.85294842 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS 5 0 1 1 46.861 47.02 3 0.094532 13444 20211116_3433_TMUAki_TMT10x_P_F5 30.712 18.796 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21205 755 19492 109838 133146 133146 1 VTARPSQPPLPR Unmodified 1317.7517 0.75171823 3173 Q9ULV3;Q9ULV3-5;Q9ULV3-3;Q9ULV3-4;Q9ULV3-2 CIZ1 Cip1-interacting zinc finger protein yes no 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 32.181 32.069 3 0.0027119 8341 20211116_3429_TMUAki_TMT10x_P_F2 69.148 42.634 736000 1103900 32289 1174900 1063900 1336300 855550 584730 683440 594290 934430 685530 1030300 95704 1195900 1016900 1334500 873390 632730 711720 580020 893640 1 1 1 1 1 1 1 1 1 1 1 736000 1103900 32289 1174900 1063900 1336300 855550 584730 683440 594290 934430 685530 1030300 95704 1195900 1016900 1334500 873390 632730 711720 580020 893640 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 47515000 47515000 0 21206 3173 19493 109839;109840 133147 133147 1 VTAVCGVVLPGQLPAPGELGGNR Unmodified 2260.1998 0.1997858 2950 Q9NU22 MDN1 Midasin yes yes 0 0 0 0 By MS/MS 2 0 1 1 74.019 73.929 3 0.006261 24097 20211116_3440_TMUAki_TMT10x_S_F2 43.888 13.806 2338600 4405300 0 3806500 3195700 3029300 3653000 2406000 2573800 2765600 3175100 2177500 4108300 201390 3913900 3075400 3120000 3648100 2488500 2687000 2686200 3044300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2338600 4405300 0 3806500 3195700 3029300 3653000 2406000 2573800 2765600 3175100 2177500 4108300 201390 3913900 3075400 3120000 3648100 2488500 2687000 2686200 3044300 1 1 0 1 1 1 1 1 1 1 1 302220000 0 302220000 21207 2950 19494 109841 133148 133148 1 VTAVIPCFPYAR Unmodified 1392.7224 0.72239194 1279;633 P11908;P11908-2;P60891;P60891-2;P21108 PRPS2;PRPS1;PRPS1L1 Ribose-phosphate pyrophosphokinase 2;Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 3 no no 0 0 0 0 By MS/MS By MS/MS 2.93 0.799 5 5 4 8 6 65.549 65.357 2;3 1.8277E-11 23304 20211116_3429_TMUAki_TMT10x_P_F2 160.59 144.36 39778000 68531000 343940 64120000 47456000 53623000 44433000 46854000 40850000 46086000 52201000 37038000 63930000 3457400 65568000 45430000 55123000 45117000 47957000 42118000 45041000 50005000 13 13 5 13 13 13 13 13 13 13 13 13973000 23056000 106690 21692000 15428000 27351000 17792000 16523000 14608000 16295000 17286000 13010000 21509000 1186000 22310000 14853000 27271000 17825000 17339000 15095000 15924000 16592000 6 6 3 6 6 6 6 6 6 6 6 25805000 45474000 237250 42428000 32028000 26272000 26641000 30331000 26243000 29791000 34915000 24028000 42421000 2271400 43257000 30578000 27852000 27292000 30618000 27023000 29118000 33412000 7 7 2 7 7 7 7 7 7 7 7 11608000000 6065100000 5543000000 21208 633;1279 19495 109842;109843;109844;109845;109846;109847;109848;109849;109850;109851;109852;109853;109854;109855 133149;133150;133151;133152;133153;133154;133155;133156;133157;133158;133159;133160;133161;133162;133163 133149 15 VTDALNATR Unmodified 959.50361 0.50360861 613 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 36.826 36.988 2 0.00025636 9281 20211116_3431_TMUAki_TMT10x_P_F4 96.143 51.736 1139700 2036500 0 1595500 1393000 1124000 1463400 1350200 1335600 1216800 1568900 1061000 1898600 73880 1651700 1335900 1179200 1476700 1357400 1372600 1193900 1506200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1139700 2036500 0 1595500 1393000 1124000 1463400 1350200 1335600 1216800 1568900 1061000 1898600 73880 1651700 1335900 1179200 1476700 1357400 1372600 1193900 1506200 1 1 0 1 1 1 1 1 1 1 1 62935000 0 62935000 21209 613 19496 109856;109857;109858;109859 133164;133165;133166;133167 133164 4 VTDDLVCLVYK Unmodified 1323.6744 0.67443869 1101 P49458 SRP9 Signal recognition particle 9 kDa protein yes yes 0 0 0 0 By MS/MS By MS/MS 5.36 1.23 1 3 3 4 3 8 6 76.97 76.976 2;3 1.3212E-18 25440 20211116_3431_TMUAki_TMT10x_P_F4 223.84 160.55 222320000 360730000 567640 381390000 244470000 306070000 248930000 207760000 190880000 223380000 264790000 206990000 336680000 17347000 386490000 234430000 314240000 250470000 216660000 199350000 217520000 253150000 17 17 5 17 17 17 17 17 17 17 17 101570000 165710000 403590 171720000 117740000 187670000 120380000 95225000 91805000 100080000 118420000 94566000 154650000 8143100 175000000 112930000 188130000 121090000 101630000 95591000 97546000 113410000 9 9 3 9 9 9 9 9 9 9 9 120750000 195020000 164050 209670000 126730000 118390000 128540000 112530000 99078000 123300000 146370000 112420000 182030000 9204200 211490000 121500000 126110000 129380000 115030000 103760000 119980000 139740000 8 8 2 8 8 8 8 8 8 8 8 20674000000 10457000000 10218000000 21210 1101 19497 109860;109861;109862;109863;109864;109865;109866;109867;109868;109869;109870;109871;109872;109873 133168;133169;133170;133171;133172;133173;133174;133175;133176;133177;133178;133179;133180;133181;133182;133183;133184 133169 17 VTDDLVCLVYKTDQAQDVK Unmodified 2209.0936 0.093648974 1101 P49458 SRP9 Signal recognition particle 9 kDa protein yes yes 0 0 0 1 By MS/MS By MS/MS 6 0.894 2 1 2 3 2 76.854 76.856 3;4 1.4692E-12 24480 20211116_3434_TMUAki_TMT10x_P_F6 135.27 124.93 22570000 37521000 522270 36903000 24613000 36296000 25727000 24111000 21779000 22619000 26934000 21018000 35008000 2356200 37682000 23658000 36740000 25915000 25085000 22512000 22153000 25822000 4 4 3 4 4 4 4 4 4 4 4 16785000 28179000 367650 26042000 17182000 30847000 19329000 19518000 17460000 17419000 20175000 15631000 26286000 1709400 26790000 16549000 30874000 19436000 20353000 17941000 17098000 19378000 3 3 2 3 3 3 3 3 3 3 3 5784800 9341600 154620 10861000 7431500 5449400 6397700 4593000 4319100 5200700 6758100 5387400 8722400 646770 10892000 7109000 5866100 6479200 4731300 4571400 5054300 6443800 1 1 1 1 1 1 1 1 1 1 1 1793800000 1109300000 684530000 21211 1101 19498 109874;109875;109876;109877;109878 133185;133186;133187;133188;133189;133190 133186 6 VTDETSGCSLTCAQFHPDGLIFGTGTMDSQIK Oxidation (M) 3488.5534 0.55342022 3182 Q9UMS4 PRPF19 Pre-mRNA-processing factor 19 yes yes 0 0 1 0 By MS/MS By MS/MS 5.71 1.03 1 2 2 2 4 3 71.199 71.289 4 3.1536E-27 22579 20211116_3445_TMUAki_TMT10x_S_F6 143.54 136.97 16771000 28697000 417970 26774000 20266000 32878000 21358000 22030000 19915000 23729000 22897000 15618000 26770000 1499600 27541000 19483000 32873000 21563000 22997000 20429000 23105000 21995000 10 10 6 10 10 10 10 10 10 10 10 10044000 16684000 246890 15672000 10539000 22401000 12264000 13456000 11474000 13351000 13463000 9353700 15564000 774320 16160000 10164000 22204000 12325000 14129000 11778000 13044000 12926000 6 6 4 6 6 6 6 6 6 6 6 6726600 12012000 171080 11102000 9726900 10477000 9094800 8574500 8440500 10378000 9433900 6264100 11205000 725310 11381000 9318900 10669000 9238000 8868000 8650600 10061000 9069800 4 4 2 4 4 4 4 4 4 4 4 9329500000 5339000000 3990500000 21212 3182 19499 109879;109880;109881;109882;109883;109884;109885 133191;133192;133193;133194;133195;133196;133197;133198;133199;133200 133199 3178 10 VTDETSGCSLTCAQFHPDGLIFGTGTMDSQIK Unmodified 3472.5585 0.55850559 3182 Q9UMS4 PRPF19 Pre-mRNA-processing factor 19 yes yes 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 75.639 75.676 4 3.5276E-46 24379 20211116_3445_TMUAki_TMT10x_S_F6 194.66 183.66 20802000 34071000 265120 35128000 23211000 21729000 23615000 11885000 9197700 14356000 22246000 19370000 31796000 1660100 35562000 22276000 22742000 23487000 12655000 10451000 13919000 21056000 9 9 5 9 9 9 9 9 9 9 9 7413600 11067000 34408 11018000 5743500 9678700 7770100 4184900 3259700 4930900 7103000 6903000 10326000 375480 11223000 5560200 9819100 7636000 4554500 3649900 4785000 6733100 3 3 2 3 3 3 3 3 3 3 3 13388000 23004000 230720 24111000 17468000 12051000 15845000 7700400 5938000 9424600 15143000 12467000 21470000 1284600 24338000 16716000 12923000 15851000 8100400 6801000 9133600 14323000 6 6 3 6 6 6 6 6 6 6 6 6099600000 2694800000 3404800000 21213 3182 19499 109886;109887;109888;109889;109890;109891 133201;133202;133203;133204;133205;133206;133207;133208;133209 133207 9 VTDFGDKVEDPTFLNQLQSGVNR Unmodified 2578.2663 0.26634504 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 1 By MS/MS By MS/MS 6.83 0.687 2 3 1 4 2 73.493 73.614 3;4 4.6111E-28 23492 20211116_3445_TMUAki_TMT10x_S_F6 173.47 147.06 39387000 65084000 470330 63214000 44475000 56386000 52267000 35923000 34656000 39652000 49731000 36676000 60723000 3648600 64519000 42861000 57404000 52064000 37668000 36562000 38572000 47507000 6 6 3 6 6 6 6 6 6 6 6 15122000 24246000 57392 22910000 16522000 28144000 19169000 13495000 13537000 14283000 18469000 14080000 22619000 1272200 23545000 15909000 28020000 19131000 14483000 14193000 13917000 17664000 3 3 1 3 3 3 3 3 3 3 3 24266000 40838000 412940 40304000 27953000 28242000 33098000 22428000 21119000 25369000 31262000 22596000 38104000 2376400 40974000 26953000 29384000 32933000 23185000 22369000 24655000 29843000 3 3 2 3 3 3 3 3 3 3 3 5398900000 3330500000 2068300000 21214 1695 19500 109892;109893;109894;109895;109896;109897 133210;133211;133212;133213;133214;133215;133216 133214 7 VTDGALVVVDCVSGVCVQTETVLR Unmodified 2575.2986 0.29857315 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 By MS/MS 5 0 1 1 97.487 97.448 3 0.00053871 31732 20211116_3444_TMUAki_TMT10x_S_F5 65.425 54.37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21215 653 19501 109898 133217 133217 1 VTEAPCYPGAPSTEASGQTGPQEPTSARA Unmodified 2916.3196 0.31957918 981 P40222 TXLNA Alpha-taxilin yes yes 0 0 0 1 By MS/MS 4 0 2 2 44.831 44.943 3;4 1.9515E-33 12336 20211116_3431_TMUAki_TMT10x_P_F4 163.16 155.35 1390000 2155800 10603 2210900 2294100 2758900 2079000 1950000 1573400 1383000 2061600 1294100 2011800 118820 2259800 2193700 2758600 2104400 2006500 1640100 1374000 1973600 3 3 1 3 3 3 3 3 3 3 3 1390000 2155800 10603 2210900 2294100 2758900 2079000 1950000 1573400 1383000 2061600 1294100 2011800 118820 2259800 2193700 2758600 2104400 2006500 1640100 1374000 1973600 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 630170000 630170000 0 21216 981 19502 109899;109900 133218;133219;133220 133218 3 VTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLR Unmodified 3873.8102 0.81022307 1600 Q13148 TARDBP TAR DNA-binding protein 43 yes yes 0 0 0 0 By MS/MS By MS/MS 2.46 1.34 4 4 1 3 1 7 6 80.833 80.822 3;4 1.7269E-31 28060 20211116_3429_TMUAki_TMT10x_P_F2 153.86 148.7 30982000 49748000 318340 51445000 35197000 46853000 40029000 27704000 30151000 33683000 42934000 28849000 46427000 1810700 52294000 33881000 47584000 40045000 29313000 31559000 32651000 41021000 14 14 4 14 14 14 14 14 14 14 14 15464000 25239000 220110 28383000 15228000 29771000 19918000 14442000 16083000 17886000 24815000 14400000 23562000 506940 28754000 14731000 29899000 19840000 15561000 16840000 17327000 23668000 7 7 2 7 7 7 7 7 7 7 7 15518000 24510000 98228 23063000 19969000 17082000 20112000 13262000 14068000 15797000 18119000 14449000 22865000 1303700 23540000 19150000 17685000 20205000 13752000 14720000 15324000 17353000 7 7 2 7 7 7 7 7 7 7 7 30859000000 21269000000 9589400000 21217 1600 19503 109901;109902;109903;109904;109905;109906;109907;109908;109909;109910;109911;109912;109913 133221;133222;133223;133224;133225;133226;133227;133228;133229;133230;133231;133232;133233;133234 133223 14 VTEEDIVELFCVCGALKR Unmodified 2137.0548 0.054761047 2725 Q9BY77;Q9BY77-2 POLDIP3 Polymerase delta-interacting protein 3 yes no 0 0 0 1 By MS/MS 7 0 1 1 79.097 79.146 3 0.00010937 27452 20211116_3435_TMUAki_TMT10x_P_F7 72.433 36.774 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21218 2725 19504 109914 133235 133235 1 VTEGLTDVILYHQPDDK Unmodified 1941.9684 0.96837211 271;272 O60506;O60506-2;O60506-3;O60506-4;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 3 19 5 1 24 6 69.128 69.069 3;4 1.8385E-15 21951 20211116_3429_TMUAki_TMT10x_P_F2 146.16 128.88 65088000 110570000 880980 125470000 73220000 84421000 71681000 63222000 63538000 68179000 78142000 60608000 103230000 6087200 126330000 70206000 88058000 72538000 65498000 65514000 66383000 74929000 38 38 23 38 38 38 38 38 37 37 37 24910000 41854000 217330 46751000 32839000 49036000 31955000 25423000 25632000 26593000 29840000 23195000 39073000 2243100 47382000 31470000 49283000 32264000 27075000 26502000 25924000 28655000 29 29 17 29 29 29 29 29 28 28 28 40178000 68715000 663650 78714000 40381000 35385000 39726000 37799000 37906000 41585000 48302000 37414000 64156000 3844100 78947000 38736000 38775000 40274000 38423000 39012000 40459000 46274000 9 9 6 9 9 9 9 9 9 9 9 10238000000 5039900000 5198200000 21219 271;272 19505 109915;109916;109917;109918;109919;109920;109921;109922;109923;109924;109925;109926;109927;109928;109929;109930;109931;109932;109933;109934;109935;109936;109937;109938;109939;109940;109941;109942;109943;109944 133236;133237;133238;133239;133240;133241;133242;133243;133244;133245;133246;133247;133248;133249;133250;133251;133252;133253;133254;133255;133256;133257;133258;133259;133260;133261;133262;133263;133264;133265;133266;133267;133268;133269;133270;133271;133272;133273;133274;133275;133276;133277;133278;133279 133236 44 VTEGLTDVILYHQPDDKK Unmodified 2070.0633 0.063335123 271;272 O60506;O60506-2;O60506-3;O60506-4;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 1 By MS/MS By MS/MS 5.33 0.943 1 2 2 1 59.456 59.523 4 5.2457E-07 18285 20211116_3431_TMUAki_TMT10x_P_F4 101.15 90.49 13354000 22651000 194960 27641000 19270000 20944000 15746000 12828000 11830000 13089000 16632000 12435000 21154000 1371700 27746000 18401000 21567000 16035000 13460000 12377000 12772000 15896000 3 3 3 3 3 3 3 3 3 3 3 7850800 12978000 100180 16084000 13391000 16767000 10869000 7928700 7146600 7674200 9773100 7310700 12121000 821850 16200000 12782000 16841000 11041000 8499800 7526500 7505500 9346500 2 2 2 2 2 2 2 2 2 2 2 5503000 9672700 94784 11557000 5879500 4176400 4877100 4899400 4683700 5414500 6859100 5124500 9032700 549850 11547000 5618100 4726100 4993500 4960300 4850600 5266900 6549400 1 1 1 1 1 1 1 1 1 1 1 1681600000 1279800000 401830000 21220 271;272 19506 109945;109946;109947 133280;133281;133282 133280 3 VTEGLTDVILYHQPDDKKK Unmodified 2198.1583 0.15829814 271;272 O60506;O60506-2;O60506-3;O60506-4;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 2 By MS/MS 7 0 1 1 54.487 55.007 5 4.8777E-12 17883 20211116_3446_TMUAki_TMT10x_S_F7 125.12 112.09 7894400 14684000 81080 11093000 9723500 9794800 6872100 25568000 22808000 21388000 16597000 7351000 13688000 755680 11551000 9256500 10413000 7613100 25074000 22285000 21061000 16203000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7894400 14684000 81080 11093000 9723500 9794800 6872100 25568000 22808000 21388000 16597000 7351000 13688000 755680 11551000 9256500 10413000 7613100 25074000 22285000 21061000 16203000 2 2 2 2 2 2 2 2 2 2 2 1045000000 0 1045000000 21221 271;272 19507 109948 133283;133284 133284 2 VTEGLVDVILYHQPDDK Unmodified 1939.9891 0.98910755 211 O43390;O43390-3 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 0 By MS/MS By MS/MS 4.35 1.8 1 3 3 3 4 3 3 11 9 76.327 76.307 3;4 6.3336E-22 26795 20211116_3430_TMUAki_TMT10x_P_F3 172.91 154.08 99202000 158540000 657670 167230000 104180000 124510000 114250000 72970000 74232000 85383000 104440000 92366000 147970000 8247100 169350000 100140000 128320000 114130000 77164000 78341000 82878000 99810000 21 21 11 21 21 21 21 21 21 21 21 50389000 80240000 353380 84433000 51500000 80448000 57870000 35620000 36035000 41443000 50621000 46919000 74888000 4422500 85780000 49556000 81193000 57691000 38652000 38133000 40235000 48381000 10 10 7 10 10 10 10 10 10 10 10 48813000 78302000 304290 82797000 52681000 44062000 56383000 37351000 38197000 43940000 53815000 45448000 73081000 3824700 83570000 50588000 47126000 56435000 38512000 40209000 42643000 51430000 11 11 4 11 11 11 11 11 11 11 11 17814000000 10552000000 7261700000 21222 211 19508 109949;109950;109951;109952;109953;109954;109955;109956;109957;109958;109959;109960;109961;109962;109963;109964;109965;109966;109967;109968 133285;133286;133287;133288;133289;133290;133291;133292;133293;133294;133295;133296;133297;133298;133299;133300;133301;133302;133303;133304;133305;133306 133287 22 VTEGLVDVILYHQPDDKK Unmodified 2068.0841 0.084070566 211 O43390;O43390-3 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 1 By MS/MS By MS/MS 5.75 1.3 1 1 2 1 3 68.559 68.729 4 8.7395E-13 23519 20211116_3446_TMUAki_TMT10x_S_F7 138.55 121.33 23322000 38854000 280720 42338000 28571000 32222000 25888000 23445000 23878000 25312000 29148000 21717000 36268000 2268700 42794000 27344000 33253000 26337000 24336000 24567000 24644000 27955000 5 5 5 5 5 5 5 5 5 5 5 9159800 14597000 94745 16138000 10864000 17390000 9559900 8489800 8385900 9202400 11020000 8529400 13626000 871570 16373000 10390000 17439000 9728900 9102400 8676100 8958200 10549000 1 1 1 1 1 1 1 1 1 1 1 14162000 24257000 185980 26200000 17707000 14832000 16328000 14955000 15492000 16110000 18128000 13188000 22642000 1397100 26421000 16955000 15814000 16608000 15234000 15891000 15686000 17406000 4 4 4 4 4 4 4 4 4 4 4 2504200000 906610000 1597600000 21223 211 19509 109969;109970;109971;109972 133307;133308;133309;133310;133311 133311 5 VTEGLVDVILYHQPDDKKK Unmodified 2196.179 0.17903358 211 O43390;O43390-3 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 2 By MS/MS By MS/MS 7 0 2 1 1 62.192 62.777 5 2.427E-17 21096 20211116_3446_TMUAki_TMT10x_S_F7 143.39 137.94 6328200 13161000 81437 6978800 14337000 22900000 11857000 22874000 21611000 21351000 13779000 5892600 12257000 694960 7794200 13688000 22346000 12459000 23212000 21281000 20915000 13535000 2 2 1 2 2 2 2 2 2 2 2 3472000 6755500 0 3845400 8600500 16563000 7983100 11880000 11668000 11219000 6868700 3232600 6292700 341930 4318700 8229900 15984000 8244000 12295000 11539000 10984000 6774500 1 1 0 1 1 1 1 1 1 1 1 2856200 6405200 81437 3133400 5736100 6336500 3873700 10994000 9942800 10132000 6910500 2660000 5964500 353030 3475600 5458100 6362300 4214500 10917000 9741900 9930500 6760200 1 1 1 1 1 1 1 1 1 1 1 3678900000 1973600000 1705300000 21224 211 19510 109973;109974 133312;133313 133313 2 VTEGSFVYK Unmodified 1028.5179 0.51786169 1133 P50395 GDI2 Rab GDP dissociation inhibitor beta yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 49.721 49.821 2 3.2552E-05 13512 20211116_3444_TMUAki_TMT10x_S_F5 117.89 31.096 4946600 7170400 3063.6 9852000 30309000 16987000 9756000 9020800 10971000 5853200 10764000 4605800 6700800 768170 9967900 28545000 16686000 11008000 9479000 11100000 5847000 10390000 1 1 1 1 1 1 1 1 1 1 1 4946600 7170400 3063.6 9852000 30309000 16987000 9756000 9020800 10971000 5853200 10764000 4605800 6700800 768170 9967900 28545000 16686000 11008000 9479000 11100000 5847000 10390000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 565790000 565790000 0 21225 1133 19511 109975;109976 133314;133315 133315 2 VTEGSFVYKGGK Unmodified 1270.6558 0.65575216 1133 P50395 GDI2 Rab GDP dissociation inhibitor beta yes yes 0 0 0 1 By MS/MS 8 0 1 1 44.418 44.389 3 1.3479E-06 11340 20211116_3447_TMUAki_TMT10x_S_F8 119.39 102.17 2142700 3686600 47624 3453800 2943400 2163600 2371800 3655800 3920800 3050900 3841100 1995400 3439100 233240 3520600 2810800 2317200 2483700 3623600 3918200 3004600 3707800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2142700 3686600 47624 3453800 2943400 2163600 2371800 3655800 3920800 3050900 3841100 1995400 3439100 233240 3520600 2810800 2317200 2483700 3623600 3918200 3004600 3707800 2 2 2 2 2 2 2 2 2 2 2 46101000 0 46101000 21226 1133 19512 109977 133316;133317 133317 2 VTEGTIREEQEYEEEVEEEPRPAAK Unmodified 2946.3731 0.37305454 220 O43491;O43491-4 EPB41L2 Band 4.1-like protein 2 yes no 0 0 0 2 By MS/MS By MS/MS 1 0 3 1 2 50.156 49.981 4;5 1.7363E-60 13947 20211116_3428_TMUAki_TMT10x_P_F1 233.43 223.31 26625000 47828000 120360 51649000 47442000 52223000 27179000 51912000 65768000 44527000 46939000 24790000 44643000 2469300 52429000 44978000 53159000 29823000 52575000 64551000 43791000 45863000 5 5 3 5 5 5 5 5 5 5 5 12610000 21583000 62588 26452000 34657000 41750000 18873000 21717000 24224000 18421000 21160000 11741000 20158000 1408400 26871000 32837000 41138000 20135000 22992000 24300000 18127000 20507000 2 2 1 2 2 2 2 2 2 2 2 14016000 26245000 57768 25196000 12785000 10473000 8306000 30195000 41544000 26105000 25779000 13049000 24485000 1060900 25558000 12141000 12020000 9688300 29583000 40250000 25664000 25356000 3 3 2 3 3 3 3 3 3 3 3 2295200000 1336400000 958820000 21227 220 19513 109978;109979;109980 133318;133319;133320;133321 133319 4 VTELALTASDR Unmodified 1174.6194 0.61936665 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 49.111 49.087 2 3.4459E-11 16765 20211116_3441_TMUAki_TMT10x_S_F3 172.26 134.02 40885000 59955000 488770 76123000 53726000 50458000 42354000 44377000 43307000 46265000 54528000 38071000 56004000 3978200 76132000 51256000 52850000 43586000 45483000 44414000 45107000 52253000 7 7 5 7 7 7 7 7 7 7 7 13412000 19358000 224340 23840000 24814000 27725000 15255000 15274000 15348000 15043000 17645000 12490000 18080000 1480700 24063000 23566000 27725000 15976000 16151000 15691000 14702000 16950000 2 2 2 2 2 2 2 2 2 2 2 27473000 40596000 264420 52283000 28912000 22733000 27100000 29103000 27960000 31222000 36883000 25582000 37924000 2497400 52070000 27690000 25124000 27610000 29332000 28723000 30406000 35303000 5 5 3 5 5 5 5 5 5 5 5 2062700000 1080700000 982010000 21228 1433 19514 109981;109982;109983;109984;109985 133322;133323;133324;133325;133326;133327;133328;133329 133325 8 VTENYLCKPEDNIYSIDFTR Unmodified 2476.158 0.15804014 22 A6NIH7 UNC119B Protein unc-119 homolog B yes yes 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 68.085 68.275 3 8.9962E-25 23319 20211116_3446_TMUAki_TMT10x_S_F7 174.63 160.8 24313000 41771000 365830 41381000 30520000 41571000 31337000 29703000 28045000 32974000 32599000 22640000 38976000 2355300 42246000 29301000 42071000 31642000 30896000 28837000 32070000 31306000 5 5 4 5 5 5 5 5 5 5 5 13806000 22345000 76794 21711000 14525000 28971000 17305000 15576000 15094000 17478000 17034000 12854000 20848000 1137900 22302000 13996000 28765000 17339000 16569000 15521000 16992000 16372000 3 3 2 3 3 3 3 3 3 3 3 10508000 19427000 289030 19670000 15995000 12600000 14033000 14127000 12951000 15496000 15565000 9786000 18128000 1217400 19944000 15305000 13306000 14303000 14327000 13316000 15078000 14934000 2 2 2 2 2 2 2 2 2 2 2 3976400000 1968200000 2008200000 21229 22 19515 109986;109987;109988;109989 133330;133331;133332;133333;133334 133334 5 VTFQFSYGTK Unmodified 1176.5815 0.58152458 3310 Q9Y512 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 2.83 0.373 1 5 4 2 61.571 61.243 2 1.4161E-08 21737 20211116_3441_TMUAki_TMT10x_S_F3 126.19 87.891 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21230 3310 19516 109990;109991;109992;109993;109994;109995 133335;133336;133337;133338;133339;133340 133340 6 VTFQGVGDEEDEDEIIVPK Unmodified 2118.0005 0.0004600951 430 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 71.931 71.81 3 2.5219E-08 24631 20211116_3429_TMUAki_TMT10x_P_F2 102.37 86.423 9138100 14905000 0 13948000 9697900 15821000 11446000 9874000 9488700 10316000 10796000 8507200 13905000 611840 14325000 9332700 15868000 11458000 10353000 9785100 10057000 10374000 4 4 0 4 4 4 4 4 4 4 4 7200300 11579000 0 10755000 7336200 13306000 8959500 7539100 7545500 8004100 8475800 6703300 10802000 488410 11068000 7067900 13268000 8959300 7970200 7771200 7798000 8147500 3 3 0 3 3 3 3 3 3 3 3 1937800 3325700 0 3193200 2361700 2514800 2486500 2335000 1943200 2311900 2319700 1804000 3102800 123430 3256800 2264800 2599700 2498800 2382400 2014000 2258800 2226100 1 1 0 1 1 1 1 1 1 1 1 3556800000 3110500000 446320000 21231 430 19517 109996;109997;109998 133341;133342;133343;133344 133343 4 VTFQTPLRDPQTHR Unmodified 1694.8853 0.8852516 3345 Q9Y6A5 TACC3 Transforming acidic coiled-coil-containing protein 3 yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 3 2 1 36.109 36.109 3;4 2.6561E-09 8364 20211116_3428_TMUAki_TMT10x_P_F1 131.86 95.013 1111700 1679200 26334 1934300 2818200 2385800 1409500 1353500 1481000 1098800 1562900 1035300 1567800 140610 1962100 2668400 2379500 1505600 1420600 1506400 1083700 1505100 2 2 2 2 2 2 2 2 2 2 2 1111700 1679200 26334 1934300 2818200 2385800 1409500 1353500 1481000 1098800 1562900 1035300 1567800 140610 1962100 2668400 2379500 1505600 1420600 1506400 1083700 1505100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 204680000 204680000 0 21232 3345 19518 109999;110000;110001 133345;133346;133347;133348 133345 4 VTFSCAAGFGQR Unmodified 1299.603 0.60300508 1694 Q14203;Q14203-6;Q14203-3;Q14203-4;Q14203-5;Q14203-2 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 50.361 50.233 2 0.00041964 14390 20211116_3440_TMUAki_TMT10x_S_F2 88.056 65.003 1637700 3044200 0 3361700 1612900 1589000 1522300 2037700 2178400 2055900 2581800 1524500 2841700 89033 3380500 1541200 1738100 1569100 2049700 2201700 2007100 2478000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1637700 3044200 0 3361700 1612900 1589000 1522300 2037700 2178400 2055900 2581800 1524500 2841700 89033 3380500 1541200 1738100 1569100 2049700 2201700 2007100 2478000 1 1 0 1 1 1 1 1 1 1 1 190810000 0 190810000 21233 1694 19519 110002;110003 133349;133350 133350 2 VTFSEDDEIINPEDVDPSVGR Unmodified 2332.0707 0.070664925 1581 Q12972;Q12972-2 PPP1R8 Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 73.057 73.003 3 7.2874E-05 25381 20211116_3439_TMUAki_TMT10x_S_F1 65.954 59.517 8443200 12476000 46680 13198000 8496500 8898400 9487300 4922100 4472100 5184400 8386700 7861600 11644000 729170 13349000 8173600 9241000 9416300 5213000 4908000 5052600 7969200 2 2 1 2 2 2 2 2 2 2 2 5012400 7156300 46680 8267800 4867800 5702500 5905800 2278400 2156900 2374600 4834600 4667300 6681700 457040 8317600 4696400 5890600 5820100 2492200 2453400 2315200 4580900 1 1 1 1 1 1 1 1 1 1 1 3430800 5319800 0 4930300 3628700 3195900 3581500 2643700 2315200 2809800 3552100 3194300 4962500 272130 5031300 3477200 3350300 3596100 2720800 2454600 2737400 3388300 1 1 0 1 1 1 1 1 1 1 1 2443400000 1498000000 945360000 21234 1581 19520 110004;110005 133351;133352 133352 2 VTFVNFTVTR Unmodified 1182.6397 0.63970816 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 63.214 63.319 2 0.0031499 19837 20211116_3431_TMUAki_TMT10x_P_F4 77.14 26.533 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21235 1695 19521 110006 133353 133353 1 VTGEADVEFATHEDAVAAMAK Oxidation (M) 2176.9947 0.99466321 1247 P55795 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2 yes yes 0 0 1 0 By MS/MS By MS/MS 2.6 1.11 2 3 2 3 7 3 52.595 52.499 3;4 1.7298E-26 15922 20211116_3442_TMUAki_TMT10x_S_F4 168.64 15.275 25073000 43092000 892220 42496000 33715000 50489000 30629000 43827000 44586000 41234000 38712000 23351000 40207000 2712000 43514000 32301000 50792000 31661000 44819000 44539000 40378000 37526000 14 14 11 14 14 14 14 14 14 14 14 15214000 25256000 461410 24923000 22009000 38449000 20166000 26088000 26274000 24660000 22951000 14169000 23565000 1467300 25651000 21082000 38057000 20741000 27105000 26344000 24143000 22243000 8 8 5 8 8 8 8 8 8 8 8 9858400 17836000 430810 17573000 11707000 12040000 10462000 17740000 18312000 16574000 15761000 9182400 16642000 1244700 17863000 11220000 12735000 10921000 17714000 18195000 16235000 15283000 6 6 6 6 6 6 6 6 6 6 6 3979000000 3241900000 737070000 21236 1247 19522 110007;110008;110009;110010;110011;110012;110013;110014;110015;110016 133354;133355;133356;133357;133358;133359;133360;133361;133362;133363;133364;133365;133366;133367;133368;133369 133369 1694 16 VTGEADVEFATHEDAVAAMAK Unmodified 2160.9997 0.99974859 1247 P55795 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2 yes yes 0 0 0 0 By MS/MS 3 0 1 1 60.68 60.414 3 7.4921E-08 20330 20211116_3430_TMUAki_TMT10x_P_F3 88.574 72.938 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21237 1247 19522 110017 133370 133370 1 VTGEADVEFATHEDAVAAMSK Oxidation (M) 2192.9896 0.98957783 894 P31943 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes yes 0 0 1 0 By MS/MS By MS/MS 2.56 1.17 7 5 9 5 1 12 15 59.988 59.874 3;4 2.516E-26 16526 20211116_3430_TMUAki_TMT10x_P_F3 163.53 68.899 122590000 195250000 1990000 205970000 172280000 257970000 142270000 209090000 210760000 191820000 181770000 114150000 182220000 11350000 210140000 164510000 258500000 148000000 214540000 210390000 188050000 176250000 32 32 14 32 32 32 32 32 32 32 32 81618000 126000000 1589600 135010000 130530000 212810000 105500000 133550000 134690000 122400000 118130000 76002000 117610000 8408900 138260000 124590000 210220000 109230000 139450000 135160000 120000000 114470000 19 19 10 19 19 19 19 19 19 19 19 40973000 69242000 400450 70963000 41753000 45161000 36766000 75538000 76074000 69421000 63643000 38152000 64617000 2940700 71886000 39924000 48282000 38771000 75086000 75231000 68052000 61779000 13 13 4 13 13 13 13 13 13 13 13 36061000000 21524000000 14536000000 21238 894 19523 110018;110019;110020;110021;110022;110023;110024;110025;110026;110027;110028;110029;110030;110031;110032;110033;110034;110035;110036;110037;110038;110039;110040;110041;110042;110043;110044 133371;133372;133373;133374;133375;133376;133377;133378;133379;133380;133381;133382;133383;133384;133385;133386;133387;133388;133389;133390;133391;133392;133393;133394;133395;133396;133397;133398;133399;133400;133401;133402;133403;133404;133405;133406;133407 133383 1095 37 VTGEADVEFATHEDAVAAMSK Unmodified 2176.9947 0.99466321 894 P31943 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 2.81 1.05 2 6 9 2 2 9 12 84.959 84.849 3 1.917E-45 20812 20211116_3441_TMUAki_TMT10x_S_F3 217.42 9.2549 20323000 31876000 94024 36056000 21434000 22485000 21853000 9516000 7620300 11355000 20334000 18922000 29760000 1631900 36284000 20559000 23452000 21704000 10385000 8826300 11014000 19222000 17 17 10 17 17 17 17 17 17 17 17 10772000 16355000 12007 18281000 11584000 15609000 13017000 4959600 3919500 5802300 10428000 10029000 15268000 769490 18474000 11135000 15827000 12847000 5605200 4616500 5632100 9857900 8 8 6 8 8 8 8 8 8 8 8 9551000 15521000 82017 17774000 9849800 6876500 8836200 4556500 3700800 5552700 9906400 8893500 14492000 862450 17811000 9423700 7625400 8857000 4779600 4209800 5382000 9364200 9 9 4 9 9 9 9 9 9 9 9 4627700000 2824900000 1802900000 21239 894 19523 110045;110046;110047;110048;110049;110050;110051;110052;110053;110054;110055;110056;110057;110058;110059;110060;110061;110062;110063;110064;110065 133408;133409;133410;133411;133412;133413;133414;133415;133416;133417;133418;133419;133420;133421;133422;133423;133424;133425;133426;133427;133428;133429;133430;133431 133423 24 VTGEADVEFATHEEAVAAMSK Oxidation (M) 2207.0052 0.005227897 1181 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 0 0 1 0 By MS/MS By MS/MS 2 0.816 4 4 4 6 6 56.01 55.78 3;4 1.1364E-26 18381 20211116_3439_TMUAki_TMT10x_S_F1 172.5 157.24 52546000 89928000 466700 86129000 66557000 99911000 59235000 82866000 84636000 77250000 75305000 48928000 83898000 4874700 88340000 63655000 100550000 61254000 84944000 84660000 75678000 72933000 25 25 18 25 25 25 25 25 25 25 25 32690000 53376000 220000 52383000 45541000 77244000 40496000 47541000 49528000 45367000 44037000 30438000 49802000 3017400 53881000 43548000 76490000 41620000 49770000 49796000 44397000 42651000 13 13 9 13 13 13 13 13 13 13 13 19856000 36552000 246710 33746000 21016000 22667000 18739000 35325000 35108000 31884000 31269000 18489000 34096000 1857300 34459000 20106000 24060000 19634000 35174000 34864000 31281000 30283000 12 12 9 12 12 12 12 12 12 12 12 10124000000 6330500000 3793900000 21240 1181 19524 110066;110067;110068;110069;110070;110071;110072;110073;110074;110075;110076;110077 133432;133433;133434;133435;133436;133437;133438;133439;133440;133441;133442;133443;133444;133445;133446;133447;133448;133449;133450;133451;133452;133453;133454;133455;133456 133446 1592 25 VTGEADVEFATHEEAVAAMSK Unmodified 2191.0103 0.010313275 1181 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.866 3 1 1 3 61.617 61.359 3 2.1167E-26 18958 20211116_3440_TMUAki_TMT10x_S_F2 166.25 152.24 8930300 14795000 34353 15500000 10788000 11557000 10757000 6737700 5318500 6802100 10172000 8314200 13808000 669250 15704000 10337000 11909000 10744000 7095600 5820800 6640600 9662300 4 4 2 4 4 4 4 4 4 4 4 4745400 7623900 13716 8183100 5626500 7984800 6646100 3280200 2645700 3253800 5259900 4418300 7116000 387030 8305700 5419400 8040900 6564300 3571700 2959400 3178900 4993200 2 2 1 2 2 2 2 2 2 2 2 4184900 7170700 20637 7316800 5161500 3572500 4110500 3457500 2672700 3548300 4912000 3895900 6691600 282230 7398000 4917500 3867800 4179900 3523900 2861400 3461700 4669100 2 2 1 2 2 2 2 2 2 2 2 1230200000 592650000 637520000 21241 1181 19524 110078;110079;110080;110081 133457;133458;133459;133460;133461;133462 133459 6 VTGEVHIGGVMLK Oxidation (M) 1354.7279 0.72787125 2406 Q96AC1;Q96AC1-2;Q96AC1-3 FERMT2 Fermitin family homolog 2 yes no 0 0 1 0 By matching By MS/MS 7 0 2 1 1 48.599 49.153 3 0.0011634 15532 20211116_3446_TMUAki_TMT10x_S_F7 72.265 50.219 4736500 7626000 38584 7866200 4237100 4446600 3810100 7557700 6544600 6178400 6956700 4409400 7116800 298040 7956700 4046300 4810700 3971800 7485800 6552900 6090900 6698100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4736500 7626000 38584 7866200 4237100 4446600 3810100 7557700 6544600 6178400 6956700 4409400 7116800 298040 7956700 4046300 4810700 3971800 7485800 6552900 6090900 6698100 2 2 1 2 2 2 2 2 2 2 2 381060000 200800000 180260000 21242 2406 19525 110082;110083 133463;133464 133463 2732 2 VTGEVLDILTR Unmodified 1214.6871 0.68705229 373 O75955;O75955-2 FLOT1 Flotillin-1 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 75.273 75.303 2 9.5543E-05 23898 20211116_3444_TMUAki_TMT10x_S_F5 97.284 70.322 4683600 7617900 0 7284000 4964100 8581400 5432200 4928800 4608600 4883100 6045300 4360800 7107000 380870 7473900 4770900 8580100 5460100 5194200 4775500 4771000 5787200 2 2 0 2 2 2 2 2 2 2 2 4683600 7617900 0 7284000 4964100 8581400 5432200 4928800 4608600 4883100 6045300 4360800 7107000 380870 7473900 4770900 8580100 5460100 5194200 4775500 4771000 5787200 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 287790000 287790000 0 21243 373 19526 110084;110085 133465;133466;133467 133467 3 VTGGAASK Unmodified 689.3708 0.37080353 1020 P42766 RPL35 60S ribosomal protein L35 yes yes 0 0 0 0 By MS/MS 5 0 1 1 29.135 29.065 2 0.057477 6354 20211116_3433_TMUAki_TMT10x_P_F5 57.249 29.075 214200 300230 0 236250 295760 328750 178240 183280 202110 157180 252780 199390 279900 11823 246910 280170 325930 187680 192910 206370 154590 242280 1 1 0 1 1 1 1 1 1 1 1 214200 300230 0 236250 295760 328750 178240 183280 202110 157180 252780 199390 279900 11823 246910 280170 325930 187680 192910 206370 154590 242280 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5319200 5319200 0 21244 1020 19527 110086 133468 133468 1 VTGPQATTGTPLVTMRPASQAGK Oxidation (M) 2284.1845 0.18452967 1160 P51610;P51610-2;P51610-4 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 1 1 By matching By MS/MS 2 0 2 1 1 39.244 39.157 3 3.9677E-07 9704 20211116_3440_TMUAki_TMT10x_S_F2 83.245 62.2 274090 436450 3841.9 607850 175690 202790 178090 486900 680490 368240 480840 255220 407900 23011 601950 168630 237960 196070 477160 663210 364530 470030 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 274090 436450 3841.9 607850 175690 202790 178090 486900 680490 368240 480840 255220 407900 23011 601950 168630 237960 196070 477160 663210 364530 470030 2 2 1 2 2 2 2 2 2 2 2 72560000 60501000 12058000 21245 1160 19528 110087;110088 133469;133470 133469 1543 2 VTGPTATVYGCGTLVDLCQGPHLR Unmodified 2571.2574 0.25737703 2705 Q9BW92 TARS2 Threonine--tRNA ligase, mitochondrial yes yes 0 0 0 0 By MS/MS 4.5 3.5 1 1 2 62.134 61.999 3 6.004E-45 20997 20211116_3439_TMUAki_TMT10x_S_F1 196.89 173.9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21246 2705 19529 110089;110090 133471;133472 133471 2 VTGQNQEQFLLLAK Unmodified 1587.8621 0.86205654 3094 Q9UBW8 COPS7A COP9 signalosome complex subunit 7a yes yes 0 0 0 0 By MS/MS 7 0 1 1 67.066 67.604 2 5.1441E-20 22538 20211116_3435_TMUAki_TMT10x_P_F7 161.99 121.99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21247 3094 19530 110091 133473 133473 1 VTGTLETK Unmodified 847.4651 0.46509784 1034 P45880;P45880-2;P45880-1 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 0 By MS/MS 4 0 1 1 33.147 33.218 2 0.011979 8145 20211116_3442_TMUAki_TMT10x_S_F4 78.334 32.617 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21248 1034 19531 110092 133474 133474 1 VTHAVVTVPAYFNDAQR Unmodified 1886.9639 0.96389585 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 0 By MS/MS By MS/MS 5.44 2.54 2 1 2 2 2 5 4 50.748 50.884 3 2.2433E-29 13996 20211116_3447_TMUAki_TMT10x_S_F8 184.99 157.34 67185000 126220000 2112400 117100000 101350000 141770000 82739000 147040000 133580000 123270000 115960000 62569000 117740000 7039300 120470000 96821000 143020000 86472000 148520000 133040000 121370000 112410000 22 22 16 22 22 22 22 22 22 22 22 34215000 63041000 1195200 57892000 65972000 105440000 54064000 72251000 65198000 63135000 58047000 31866000 58805000 3968200 60134000 63026000 103730000 55807000 74862000 65587000 62037000 56217000 11 11 8 11 11 11 11 11 11 11 11 32970000 63176000 917200 59205000 35378000 36336000 28675000 74785000 68378000 60133000 57910000 30703000 58935000 3071100 60337000 33795000 39291000 30666000 73658000 67454000 59333000 56188000 11 11 8 11 11 11 11 11 11 11 11 20944000000 11876000000 9067800000 21249 614 19532 110093;110094;110095;110096;110097;110098;110099;110100;110101 133475;133476;133477;133478;133479;133480;133481;133482;133483;133484;133485;133486;133487;133488;133489;133490;133491;133492;133493;133494;133495;133496;133497 133495 23 VTIAQGGVLPNIQAVLLPK Unmodified 1930.1615 0.16153303 592;2391 Q6FI13;P0C0S8;Q99878;Q9BTM1;Q16777;Q96KK5;P20671;Q93077;Q7L7L0;P04908 HIST2H2AA3;HIST1H2AG;HIST1H2AJ;H2AFJ;HIST2H2AC;HIST1H2AH;HIST1H2AD;HIST1H2AC;HIST3H2A;HIST1H2AB Histone H2A type 2-A;Histone H2A type 1;Histone H2A type 1-J;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-H;Histone H2A type 1-D;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E no no 0 0 0 0 By MS/MS By MS/MS 5.06 1.67 8 46 94 149 152 129 161 34 399 374 56.47 56.499 2;3;4 1.0741E-71 26270 20211116_3440_TMUAki_TMT10x_S_F2 295.62 267.44 4843000000 7838400000 43713000 7241800000 5230700000 7718000000 5928800000 4997400000 4814400000 5135800000 5861400000 4509000000 7311800000 282790000 7437100000 5030900000 7772100000 5942800000 5222400000 4983800000 5010200000 5621900000 924 928 296 927 922 928 923 923 924 925 924 3192600000 5008400000 29372000 4602200000 3067700000 5826300000 3666900000 3268400000 3167700000 3351000000 3736900000 2972500000 4671800000 172180000 4742000000 2954900000 5802500000 3672800000 3454600000 3264700000 3269300000 3587200000 504 507 147 507 504 507 505 504 504 505 504 1650300000 2830000000 14340000 2639600000 2163100000 1891700000 2261800000 1729000000 1646700000 1784800000 2124500000 1536500000 2640000000 110610000 2695100000 2076000000 1969600000 2270100000 1767800000 1719100000 1740900000 2034600000 420 421 149 420 418 421 418 419 420 420 420 2364900000000 1268600000000 1096200000000 21250 592;2391 19533 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134035 965 VTIAQGGVLPNIQAVLLPKK Unmodified 2058.2565 0.25649604 592;2391 Q6FI13;P0C0S8;Q99878;Q9BTM1;Q16777;Q96KK5;P20671;Q93077;Q7L7L0;P04908 HIST2H2AA3;HIST1H2AG;HIST1H2AJ;H2AFJ;HIST2H2AC;HIST1H2AH;HIST1H2AD;HIST1H2AC;HIST3H2A;HIST1H2AB Histone H2A type 2-A;Histone H2A type 1;Histone H2A type 1-J;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-H;Histone H2A type 1-D;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E no no 0 0 0 1 By MS/MS By MS/MS 6.09 0.793 3 4 4 6 5 77.67 77.688 3;4 4.5884E-18 26873 20211116_3435_TMUAki_TMT10x_P_F7 141.86 137.69 110240000 176330000 1286600 183360000 136610000 118440000 113550000 85699000 82082000 89046000 118620000 102640000 164560000 8618900 185590000 130420000 123920000 115410000 88886000 86178000 86829000 113300000 13 13 7 13 13 13 13 13 13 13 13 41513000 64244000 873150 66111000 38629000 67872000 45147000 31833000 30038000 32684000 44925000 38659000 59954000 3208700 67338000 37256000 68225000 44986000 34210000 31748000 31886000 42877000 6 6 5 6 6 6 6 6 6 6 6 68725000 112080000 413470 117250000 97984000 50564000 68407000 53866000 52044000 56362000 73699000 63984000 104610000 5410300 118250000 93163000 55699000 70428000 54676000 54430000 54943000 70424000 7 7 2 7 7 7 7 7 7 7 7 24609000000 10345000000 14264000000 21251 592;2391 19534 110875;110876;110877;110878;110879;110880;110881;110882;110883;110884;110885 134463;134464;134465;134466;134467;134468;134469;134470;134471;134472;134473;134474;134475 134468 13 VTIAQGYDALSSMANIAGYK Unmodified 2072.0248 0.024841127 1630 Q13423 NNT NAD(P) transhydrogenase, mitochondrial yes yes 0 0 0 0 By MS/MS 3 0 1 1 79.572 79.521 3 6.2822E-05 29028 20211116_3441_TMUAki_TMT10x_S_F3 70.414 59.755 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21252 1630 19535 110886 134476 134476 1 VTIDPENNLISIWNNGK Unmodified 1925.9847 0.98469087 625 P11388;P11388-2;P11388-3;P11388-4 TOP2A DNA topoisomerase 2-alpha yes no 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 78.732 78.781 3 7.049E-11 27771 20211116_3446_TMUAki_TMT10x_S_F7 123.72 101.88 3202500 5237100 32901 5385600 3449000 3041200 4194600 2272200 2008300 2675700 4046500 2982100 4887300 299630 5448600 3327800 3225500 4148100 2361100 2211100 2596600 3840400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3202500 5237100 32901 5385600 3449000 3041200 4194600 2272200 2008300 2675700 4046500 2982100 4887300 299630 5448600 3327800 3225500 4148100 2361100 2211100 2596600 3840400 1 1 1 1 1 1 1 1 1 1 1 607900000 0 607900000 21253 625 19536 110887;110888 134477;134478 134477 2 VTIEHAR Unmodified 824.45045 0.45045083 1612 Q13243;Q13243-3;Q13243-2 SRSF5 Serine/arginine-rich splicing factor 5 yes no 0 0 0 0 By MS/MS 3 0 1 1 26.89 26.597 3 0.047198 7710 20211116_3441_TMUAki_TMT10x_S_F3 48.346 34.571 44956 89670 0 66133 64851 47588 73076 41319 55362 46680 67656 41858 83583 3908.7 68851 62383 49482 73146 42487 57532 45369 64884 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 44956 89670 0 66133 64851 47588 73076 41319 55362 46680 67656 41858 83583 3908.7 68851 62383 49482 73146 42487 57532 45369 64884 1 1 0 1 1 1 1 1 1 1 1 4481300 0 4481300 21254 1612 19537 110889 134479 134479 1 VTILGHVQR Unmodified 1021.6033 0.60326308 1487 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 35.602 35.515 3 0.00033998 9746 20211116_3429_TMUAki_TMT10x_P_F2 108.3 59.516 2775700 4166800 102350 5428800 4438300 4053100 2848800 4015100 4027900 3707700 4546600 2585100 3892700 338750 5428600 4221200 4213100 3009200 4075000 4064500 3633800 4369800 3 3 2 3 3 3 3 3 3 3 3 1191900 1753000 10405 2032200 3019800 2633000 1502300 1566200 1662600 1366500 1661400 1109700 1636800 124070 2062500 2857400 2621300 1608200 1640300 1684400 1342800 1602800 2 2 1 2 2 2 2 2 2 2 2 1583800 2413800 91944 3396600 1418500 1420100 1346400 2448900 2365200 2341200 2885100 1475400 2256000 214680 3366100 1363900 1591800 1401000 2434700 2380100 2291000 2767100 1 1 1 1 1 1 1 1 1 1 1 114390000 82441000 31948000 21255 1487 19538 110890;110891;110892 134480;134481;134482 134481 3 VTITGSPAATQAAQYLISQR Unmodified 2075.1011 0.10111761 3200 Q9UNW9 NOVA2 RNA-binding protein Nova-2 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 71.574 71.277 3 2.5742E-18 25745 20211116_3441_TMUAki_TMT10x_S_F3 148.85 132.06 7151500 12185000 283210 10798000 7800400 9869900 8468900 6309400 6397400 7311900 8568400 6660900 11365000 865940 11100000 7513300 10032000 8491300 6624600 6676000 7099900 8198400 3 3 3 3 3 3 3 3 3 3 3 2745800 4402600 155940 4156200 2516700 4930600 3131700 2396400 2460200 2893800 3316700 2557800 4107200 369760 4269000 2438000 4918300 3123700 2579300 2562600 2805700 3173000 1 1 1 1 1 1 1 1 1 1 1 4405700 7782800 127280 6641600 5283700 4939200 5337200 3913000 3937200 4418200 5251700 4103100 7257900 496180 6830700 5075300 5113700 5367600 4045400 4113300 4294200 5025400 2 2 2 2 2 2 2 2 2 2 2 916460000 440200000 476260000 21256 3200 19539 110893;110894;110895 134483;134484;134485;134486 134485 4 VTITGTPAATQAAQYLITQR Unmodified 2103.1324 0.13241774 1153 P51513;P51513-5 NOVA1 RNA-binding protein Nova-1 yes no 0 0 0 0 By MS/MS 3 0 1 1 71.414 71 3 2.6355E-05 25738 20211116_3441_TMUAki_TMT10x_S_F3 78.456 55.23 1812300 3761900 32554 3351500 3146700 2172000 2420700 2310400 1898400 2359400 2762500 1687700 3508700 199280 3430400 3000900 2288600 2477200 2343600 1984800 2302300 2638200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1812300 3761900 32554 3351500 3146700 2172000 2420700 2310400 1898400 2359400 2762500 1687700 3508700 199280 3430400 3000900 2288600 2477200 2343600 1984800 2302300 2638200 1 1 1 1 1 1 1 1 1 1 1 210560000 0 210560000 21257 1153 19540 110896 134487 134487 1 VTLATLK Unmodified 744.47454 0.47454032 524 P06748;P06748-3;P06748-2 NPM1 Nucleophosmin yes no 0 0 0 0 By MS/MS By MS/MS 4.14 3.09 2 2 1 2 4 3 51.759 51.64 2 0.0011414 14799 20211116_3436_TMUAki_TMT10x_P_F8 140.98 20.339 24153000 43736000 290730 36399000 46362000 55991000 28282000 58701000 51016000 43329000 46323000 22491000 40783000 2561500 37944000 44016000 55892000 30336000 59086000 50739000 42951000 44831000 6 6 4 6 6 6 6 6 6 6 6 11570000 20959000 208770 17161000 30698000 41583000 17679000 28087000 21692000 21329000 22483000 10774000 19542000 1409000 18140000 29119000 40553000 18738000 29036000 21920000 21110000 21664000 3 3 2 3 3 3 3 3 3 3 3 12583000 22778000 81956 19238000 15664000 14407000 10603000 30614000 29325000 22000000 23840000 11717000 21241000 1152500 19804000 14897000 15339000 11599000 30050000 28819000 21841000 23168000 3 3 2 3 3 3 3 3 3 3 3 3518700000 2203900000 1314800000 21258 524 19541 110897;110898;110899;110900;110901;110902;110903 134488;134489;134490;134491;134492;134493;134494 134491 7 VTLDWAKPK Unmodified 1056.5968 0.59678072 729 P19338 NCL Nucleolin yes yes 0 0 0 1 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 53.571 53.426 3 0.023919 15392 20211116_3428_TMUAki_TMT10x_P_F1 56.783 23.374 19076000 27611000 0 41395000 40522000 29559000 21919000 17427000 14295000 16195000 22667000 17760000 25816000 1672400 41079000 38373000 30570000 22970000 18294000 15173000 15867000 21607000 3 3 0 3 3 3 3 3 3 3 3 11679000 16271000 0 24525000 34470000 25262000 16657000 10686000 8856200 9926100 13487000 10874000 15214000 1223000 24447000 32599000 25362000 17586000 11578000 9515400 9725700 12867000 2 2 0 2 2 2 2 2 2 2 2 7397300 11340000 0 16870000 6052500 4297000 5261500 6740700 5438400 6268600 9179900 6886500 10602000 449450 16632000 5774100 5207900 5383800 6716000 5657600 6141700 8739700 1 1 0 1 1 1 1 1 1 1 1 577440000 467210000 110240000 21259 729 19542 110904;110905;110906 134495;134496;134497 134495 3 VTLEYRPVIDK Unmodified 1331.7449 0.74490152 882 P31040;P31040-3;P31040-2 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 50.655 51.238 3 0.052097 16354 20211116_3446_TMUAki_TMT10x_S_F7 44.829 15.925 11027000 18781000 170640 21214000 17017000 17737000 11403000 13913000 13961000 12373000 15902000 10268000 17534000 1154600 21418000 16185000 18198000 11940000 14293000 14160000 12148000 15280000 2 2 1 2 2 2 2 2 2 2 2 5330900 9037500 0 10183000 11313000 12645000 6380600 6392400 6670700 5912300 6928400 4963600 8437200 523240 10344000 10724000 12589000 6739000 6800500 6782700 5794000 6675600 1 1 0 1 1 1 1 1 1 1 1 5695900 9743600 170640 11031000 5703100 5092600 5022800 7521100 7290600 6460800 8973500 5304700 9096600 631360 11074000 5461600 5608900 5200600 7492600 7377400 6353600 8604300 1 1 1 1 1 1 1 1 1 1 1 494830000 227800000 267030000 21260 882 19543 110907;110908 134498;134499 134499 2 VTLGTQPTVLR Unmodified 1183.6925 0.69247202 1847 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 47.481 47.423 2 1.0859E-18 12972 20211116_3428_TMUAki_TMT10x_P_F1 226.39 178.36 12520000 19772000 140580 24573000 21632000 20650000 13364000 17522000 18149000 15104000 18833000 11659000 18467000 1263100 24671000 20540000 21208000 14136000 17901000 18279000 14851000 18146000 6 6 4 6 6 6 6 6 6 6 6 6474200 9601700 31557 11931000 16852000 16055000 8635600 8838200 9134800 7726200 9176300 6028100 8968100 677980 12068000 15952000 15939000 9204500 9317000 9272700 7591600 8850800 3 3 1 3 3 3 3 3 3 3 3 6046200 10170000 109020 12642000 4779400 4595100 4728100 8683800 9014700 7377900 9656600 5630400 9498900 585130 12602000 4588000 5269400 4931300 8583700 9006100 7259400 9295500 3 3 3 3 3 3 3 3 3 3 3 1463300000 890570000 572780000 21261 1847 19544 110909;110910;110911;110912 134500;134501;134502;134503;134504;134505 134500 6 VTLLEGDHVR Unmodified 1137.6142 0.6142217 346 O75534;O75534-2;O75534-3;O75534-4 CSDE1 Cold shock domain-containing protein E1 yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 38.726 38.83 3 0.00030321 10111 20211116_3431_TMUAki_TMT10x_P_F4 99.174 44.831 1159800 1678300 59399 1840400 1803000 1649300 1377200 1347700 1531400 1286600 1584600 1080300 1566600 160520 1863200 1721700 1685300 1424000 1383700 1553000 1259100 1526900 3 3 3 3 3 3 3 3 3 3 3 657930 917660 45237 1026000 1272900 1183600 785570 668400 716980 587070 808500 612940 856680 105320 1041400 1211000 1184500 820200 703150 735650 576710 777090 1 1 1 1 1 1 1 1 1 1 1 501830 760650 14162 814350 530150 465750 591600 679320 814380 699510 776090 467360 709970 55200 821770 510730 500770 603770 680520 817380 682340 749850 2 2 2 2 2 2 2 2 2 2 2 208270000 155620000 52653000 21262 346 19545 110913;110914 134506;134507;134508 134506 3 VTLMQLPTRQEIR Oxidation (M) 1599.8767 0.87666075 1249 P55884;P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 0 0 1 1 By MS/MS 1 0 1 1 42.186 42.186 3 0.059551 10801 20211116_3428_TMUAki_TMT10x_P_F1 41.293 14.544 1020300 1502500 9906 1744000 2388500 2552200 1527900 1605500 1702500 1200500 1553000 950060 1402900 112980 1774200 2269200 2528900 1600200 1668000 1719100 1189100 1502700 1 1 1 1 1 1 1 1 1 1 1 1020300 1502500 9906 1744000 2388500 2552200 1527900 1605500 1702500 1200500 1553000 950060 1402900 112980 1774200 2269200 2528900 1600200 1668000 1719100 1189100 1502700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 185030000 185030000 0 21263 1249 19546 110915 134509 134509 1698 1 VTLSFPSTLQTGTGTLK Unmodified 1749.9513 0.95126548 1246 P55786;P55786-2;A6NEC2;A6NEC2-3 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 0 0 0 0 By MS/MS By MS/MS 3 0 4 3 1 72.414 72.142 2;3 8.211E-46 25170 20211116_3430_TMUAki_TMT10x_P_F3 218.06 172.07 11617000 16673000 22156 20558000 10563000 13249000 11716000 7298300 8480700 8584800 11671000 10814000 15572000 693700 20589000 10140000 13814000 11724000 7759200 8882500 8331300 11160000 3 3 1 3 3 3 3 3 3 3 3 8009300 11012000 0 13740000 7222500 10665000 8074100 4774400 5775800 5950700 7841000 7455200 10285000 377700 13778000 6928800 10923000 8074300 5186800 6049700 5763300 7499900 2 2 0 2 2 2 2 2 2 2 2 3607600 5660900 22156 6818400 3340100 2583500 3642200 2523900 2705000 2634100 3829700 3359200 5286600 316000 6810800 3211600 2891800 3649600 2572500 2832800 2568100 3659600 1 1 1 1 1 1 1 1 1 1 1 3173900000 1395900000 1778000000 21264 1246 19547 110916;110917;110918;110919 134510;134511;134512;134513 134512 4 VTLTSEEEAR Unmodified 1133.5564 0.55643205 462 P00338;P00338-3;P00338-4 LDHA L-lactate dehydrogenase A chain yes no 0 0 0 0 By MS/MS By MS/MS 2.6 1.2 2 3 3 1 1 4 6 33.261 33.242 2 1.8027E-43 7797 20211116_3428_TMUAki_TMT10x_P_F1 301.87 233.09 15909000 25479000 35712 24103000 18376000 15724000 15586000 10866000 12968000 10866000 17853000 14812000 23769000 1290300 24561000 17545000 16427000 15874000 11293000 13480000 10612000 17070000 9 9 4 9 9 9 9 9 9 9 9 5935500 9372400 27964 8707700 9137500 8491200 5667500 4005600 4723900 3894900 6464400 5526300 8742900 498480 8927000 8671700 8562800 5901000 4295700 4908800 3808600 6182100 4 4 3 4 4 4 4 4 4 4 4 9973300 16106000 7747.6 15395000 9238300 7233200 9918300 6860100 8243900 6970700 11388000 9285900 15026000 791830 15634000 8873600 7863800 9973200 6997000 8571600 6803400 10888000 5 5 1 5 5 5 5 5 5 5 5 2955200000 1543500000 1411600000 21265 462 19548 110920;110921;110922;110923;110924;110925;110926;110927;110928;110929 134514;134515;134516;134517;134518;134519;134520;134521;134522;134523;134524 134514 11 VTLVFEHVDQDLR Unmodified 1569.8151 0.81510635 632 P11802 CDK4 Cyclin-dependent kinase 4 yes yes 0 0 0 0 By matching By MS/MS 2.5 0.5 1 1 1 1 63.248 62.882 3 6.8171E-05 22430 20211116_3441_TMUAki_TMT10x_S_F3 94.717 72.519 1707800 3128300 68141 2790300 2086600 1663000 1807300 1790400 1455900 1625700 2268700 1590700 2917800 210400 2853600 1997800 1766500 1837000 1809000 1525400 1594500 2163400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1707800 3128300 68141 2790300 2086600 1663000 1807300 1790400 1455900 1625700 2268700 1590700 2917800 210400 2853600 1997800 1766500 1837000 1809000 1525400 1594500 2163400 1 1 1 1 1 1 1 1 1 1 1 679120000 360500000 318630000 21266 632 19549 110930;110931 134525 134525 1 VTMNDEDMDTYVFAVGTR 2 Oxidation (M) 2094.8874 0.88742095 2402 Q96A33;Q96A33-2 CCDC47 Coiled-coil domain-containing protein 47 yes no 0 0 2 0 By MS/MS 3 0 1 1 57.556 57.153 3 0.0023804 20050 20211116_3441_TMUAki_TMT10x_S_F3 60.334 49.7 1749200 2997600 5997.4 2921500 2125000 1759000 1609200 2983300 3047300 2560500 2694400 1628800 2796800 155880 2968400 2025000 1891200 1703800 2958800 3024600 2518100 2610100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1749200 2997600 5997.4 2921500 2125000 1759000 1609200 2983300 3047300 2560500 2694400 1628800 2796800 155880 2968400 2025000 1891200 1703800 2958800 3024600 2518100 2610100 1 1 1 1 1 1 1 1 1 1 1 229670000 0 229670000 21267 2402 19550 110932 134526 134526 2727;2728 1 VTNEFVHINNLK Unmodified 1426.7569 0.75686319 107 O00743;O00743-2;O00743-3 PPP6C Serine/threonine-protein phosphatase 6 catalytic subunit;Serine/threonine-protein phosphatase 6 catalytic subunit, N-terminally processed yes no 0 0 0 0 By MS/MS 6 0 1 1 51.813 51.914 3 0.0016049 14246 20211116_3434_TMUAki_TMT10x_P_F6 71.548 56.346 3016100 4502500 0 4982000 5940000 6736200 4091100 3824300 3706500 3299000 4033600 2808200 4203100 280090 5074800 5648400 6688700 4234500 4019500 3799200 3243600 3881000 1 1 0 1 1 1 1 1 1 1 1 3016100 4502500 0 4982000 5940000 6736200 4091100 3824300 3706500 3299000 4033600 2808200 4203100 280090 5074800 5648400 6688700 4234500 4019500 3799200 3243600 3881000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 218740000 218740000 0 21268 107 19551 110933 134527 134527 1 VTNGAFTGEISPGMIK Oxidation (M) 1636.8131 0.81305744 1271 P60174;P60174-1 TPI1 Triosephosphate isomerase yes no 0 0 1 0 By MS/MS By MS/MS 6.09 0.793 3 4 4 6 5 57.598 57.895 2;3 2.0935E-22 18949 20211116_3446_TMUAki_TMT10x_S_F7 179.6 147.11 49726000 80590000 350430 88826000 60596000 75810000 46825000 69030000 67309000 61148000 69330000 46299000 75230000 4181600 89840000 57750000 77881000 48851000 70291000 67651000 60045000 66817000 13 13 4 13 13 13 13 13 13 13 13 21773000 33760000 120850 36025000 36149000 53228000 24460000 28833000 29010000 26252000 29140000 20272000 31510000 1934700 36849000 34363000 52616000 25563000 30469000 29318000 25745000 28106000 7 7 2 7 7 7 7 7 7 7 7 27953000 46830000 229590 52800000 24447000 22582000 22366000 40197000 38300000 34897000 40190000 26027000 43720000 2246900 52991000 23387000 25265000 23289000 39822000 38333000 34300000 38711000 6 6 2 6 6 6 6 6 6 6 6 10625000000 6275600000 4349100000 21269 1271 19552 110934;110935;110936;110937;110938;110939;110940;110941;110942;110943;110944 134528;134529;134530;134531;134532;134533;134534;134535;134536;134537;134538;134539;134540 134539 1712 13 VTNGAFTGEISPGMIK Unmodified 1620.8181 0.81814282 1271 P60174;P60174-1 TPI1 Triosephosphate isomerase yes no 0 0 0 0 By MS/MS By MS/MS 7.17 0.687 1 3 2 2 4 63.664 63.889 2;3 3.9834E-52 20933 20211116_3435_TMUAki_TMT10x_P_F7 258 210.07 42294000 70517000 137970 77118000 50513000 47083000 46837000 28157000 24126000 29660000 47254000 39378000 65824000 3326400 77758000 48323000 49392000 46998000 29628000 26359000 28906000 44868000 7 7 2 7 7 7 7 7 7 7 7 19786000 32834000 24329 36160000 28533000 32203000 26347000 14096000 11705000 14604000 21663000 18422000 30650000 1615100 36595000 27294000 32643000 26386000 15260000 12902000 14242000 20590000 3 3 1 3 3 3 3 3 3 3 3 22508000 37682000 113640 40959000 21981000 14880000 20490000 14061000 12421000 15057000 25590000 20956000 35174000 1711300 41163000 21029000 16748000 20612000 14368000 13456000 14664000 24278000 4 4 1 4 4 4 4 4 4 4 4 5063600000 1864300000 3199200000 21270 1271 19552 110945;110946;110947;110948;110949;110950 134541;134542;134543;134544;134545;134546;134547;134548 134543 8 VTNLSEDTRETDLQELFRPFGSISR Unmodified 2909.4519 0.45191398 359 O75821 EIF3G Eukaryotic translation initiation factor 3 subunit G yes yes 0 0 0 2 By MS/MS By MS/MS 6 1.41 2 2 2 2 2 5 5 75.094 75.102 4 6.3167E-87 26140 20211116_3446_TMUAki_TMT10x_S_F7 264.98 245.25 83578000 136820000 435010 124910000 99530000 130340000 98842000 91495000 85272000 89727000 103040000 77819000 127620000 5515400 128360000 95416000 131570000 99876000 94933000 87974000 87705000 98845000 20 20 10 20 20 20 20 20 20 20 20 49496000 79077000 274270 72558000 44307000 89576000 55885000 52249000 49137000 53659000 59615000 46087000 73763000 2974100 74736000 42781000 89366000 55872000 55050000 50655000 52348000 57184000 11 11 5 11 11 11 11 11 11 11 11 34082000 57742000 160740 52356000 55223000 40759000 42958000 39245000 36135000 36068000 43421000 31733000 53859000 2541200 53619000 52634000 42204000 44004000 39883000 37318000 35357000 41661000 9 9 5 9 9 9 9 9 9 9 9 21834000000 11444000000 10390000000 21271 359 19553 110951;110952;110953;110954;110955;110956;110957;110958;110959;110960 134549;134550;134551;134552;134553;134554;134555;134556;134557;134558;134559;134560;134561;134562;134563;134564;134565;134566;134567;134568 134565 20 VTNRDIICQIAYAR Unmodified 1691.8777 0.87772338 1051 P46777 RPL5 60S ribosomal protein L5 yes yes 0 0 0 1 By MS/MS By MS/MS 2.89 2.77 4 3 2 5 4 51.027 50.874 2;3 8.8482E-38 16403 20211116_3439_TMUAki_TMT10x_S_F1 252.52 237.13 47660000 78249000 772040 88391000 76215000 91753000 54500000 67860000 56027000 57045000 64832000 44381000 73052000 4962600 89508000 72572000 92728000 56465000 69877000 57243000 56159000 62269000 11 11 6 11 11 11 11 11 11 11 11 33701000 54518000 692660 61787000 59915000 80418000 44433000 47270000 38543000 39506000 44498000 31383000 50899000 3716300 62798000 57096000 80030000 45698000 49501000 39680000 38903000 42742000 6 6 3 6 6 6 6 6 6 6 6 13959000 23730000 79380 26605000 16300000 11336000 10067000 20590000 17483000 17539000 20334000 12998000 22154000 1246300 26710000 15476000 12698000 10767000 20376000 17563000 17255000 19527000 5 5 3 5 5 5 5 5 5 5 5 16290000000 9954300000 6335900000 21272 1051 19554 110961;110962;110963;110964;110965;110966;110967;110968;110969 134569;134570;134571;134572;134573;134574;134575;134576;134577;134578;134579;134580 134576 12 VTPDIEESLLEPENEK Unmodified 1840.8942 0.89420411 1683 Q14151 SAFB2 Scaffold attachment factor B2 yes yes 0 0 0 0 By MS/MS By MS/MS 1.75 0.433 1 3 1 3 69.963 69.736 3 2.6752E-05 24152 20211116_3439_TMUAki_TMT10x_S_F1 88.73 61.701 18856000 32933000 128740 31367000 21368000 23730000 21024000 18930000 18432000 19253000 23595000 17557000 30725000 1528100 31996000 20475000 24538000 21263000 19499000 19048000 18790000 22601000 5 5 2 5 5 5 5 5 5 5 5 3390800 6694300 0 6160500 4338300 8151200 4615700 3970300 4104600 4259300 4308300 3157100 6244500 292860 6352200 4166600 8087100 4651600 4256400 4205300 4148000 4149800 1 1 0 1 1 1 1 1 1 1 1 15466000 26239000 128740 25206000 17029000 15579000 16408000 14960000 14327000 14994000 19287000 14400000 24480000 1235300 25644000 16308000 16451000 16612000 15242000 14842000 14642000 18452000 4 4 2 4 4 4 4 4 4 4 4 1532400000 672270000 860080000 21273 1683 19555 110970;110971;110972;110973 134581;134582;134583;134584;134585;134586;134587 134583 7 VTPNEGLTVSFPFGK Unmodified 1591.8246 0.8246084 1726 Q14690 PDCD11 Protein RRP5 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 75.491 75.435 3 1.4523E-06 23922 20211116_3447_TMUAki_TMT10x_S_F8 103.39 82.724 13259000 22440000 213240 19724000 14978000 20012000 16345000 16182000 16729000 17451000 16708000 12346000 20929000 1263700 20318000 14405000 20283000 16520000 16684000 17001000 16991000 16118000 4 4 3 4 4 4 4 4 4 4 4 4143900 7292500 132890 6156000 4236400 9135600 5405900 5225200 5386000 5624500 5421600 3859400 6800500 468700 6404900 4099500 9035100 5421700 5522000 5481500 5476700 5229000 1 1 1 1 1 1 1 1 1 1 1 9114800 15148000 80354 13568000 10742000 10876000 10939000 10956000 11343000 11827000 11286000 8486900 14128000 795030 13913000 10306000 11248000 11098000 11162000 11520000 11515000 10889000 3 3 2 3 3 3 3 3 3 3 3 2195800000 826980000 1368800000 21274 1726 19556 110974;110975;110976;110977 134588;134589;134590;134591;134592 134592 5 VTPQREEGEVTVCFK Unmodified 1777.8669 0.86688392 3144 Q9UJW0;Q9UJW0-2;Q9UJW0-3 DCTN4 Dynactin subunit 4 yes no 0 0 0 1 By MS/MS By MS/MS 5.17 0.687 1 3 2 3 3 45.118 45.251 3 1.0757E-23 11628 20211116_3444_TMUAki_TMT10x_S_F5 181.81 160.26 17765000 27261000 103380 29393000 25753000 26503000 18816000 18388000 18118000 17009000 21476000 16541000 25446000 1509200 29792000 24514000 26995000 19427000 19063000 18582000 16669000 20613000 5 5 2 5 5 5 5 5 5 5 5 10795000 15966000 71343 17573000 18063000 20128000 12009000 11573000 11567000 10503000 12812000 10051000 14904000 911940 17852000 17162000 20155000 12485000 12166000 11831000 10302000 12321000 3 3 1 3 3 3 3 3 3 3 3 6970200 11295000 32032 11820000 7690400 6374900 6806200 6814800 6550900 6505800 8664100 6490100 10541000 597300 11940000 7352300 6840100 6942200 6897400 6750600 6366600 8292500 2 2 1 2 2 2 2 2 2 2 2 1210500000 707020000 503500000 21275 3144 19557 110978;110979;110980;110981;110982;110983 134593;134594;134595;134596;134597;134598;134599;134600;134601 134598 9 VTPRGPK Unmodified 753.44972 0.44972255 3381 yes no 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 29.617 29.502 3 0.066862 7374 20211116_3429_TMUAki_TMT10x_P_F2 48.504 8.8408 + 392240 638690 3819.1 543660 562640 770290 460130 445110 523580 453230 497530 365230 595610 37219 564730 537060 763430 474050 469210 528960 442310 480750 2 2 1 2 2 2 2 2 2 2 2 392240 638690 3819.1 543660 562640 770290 460130 445110 523580 453230 497530 365230 595610 37219 564730 537060 763430 474050 469210 528960 442310 480750 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9979900 9979900 0 21276 3381 19558 110984;110985 134602;134603 134603 2 VTPSTVLLQVLEDTCR Unmodified 1829.9557 0.95569893 2736 Q9BZE9;Q9BZE9-2 ASPSCR1 Tether containing UBX domain for GLUT4 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 80.569 80.565 3 4.4594E-15 26048 20211116_3447_TMUAki_TMT10x_S_F8 144.18 124.86 890260 1257900 17181 1197600 1056400 1003600 905050 761730 793000 906420 869300 829050 1173500 92147 1223100 1010100 1028900 922470 791010 814350 879290 836220 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 890260 1257900 17181 1197600 1056400 1003600 905050 761730 793000 906420 869300 829050 1173500 92147 1223100 1010100 1028900 922470 791010 814350 879290 836220 1 1 1 1 1 1 1 1 1 1 1 778500000 503420000 275080000 21277 2736 19559 110986;110987;110988;110989 134604;134605;134606 134606 3 VTPTRTEIIILATR Unmodified 1582.9406 0.94064121 783 P23396;P23396-2 RPS3 40S ribosomal protein S3 yes no 0 0 0 1 By MS/MS By MS/MS 4 2.35 2 3 4 2 1 2 2 7 9 53.754 53.641 2;3 8.2766E-30 18662 20211116_3441_TMUAki_TMT10x_S_F3 218.06 182.74 70143000 113320000 829970 108830000 87410000 105600000 73130000 94007000 91408000 81339000 90866000 65315000 105720000 6674500 111290000 83494000 107520000 75491000 95785000 92172000 79962000 87672000 14 14 10 14 14 14 14 14 14 14 14 34187000 54835000 272710 51615000 46999000 74363000 41317000 46163000 45187000 40968000 44827000 31832000 51155000 3111700 53223000 44929000 73719000 42327000 48203000 45788000 40225000 43254000 7 7 3 7 7 7 7 7 7 7 7 35957000 58482000 557260 57214000 40411000 31236000 31813000 47843000 46220000 40371000 46039000 33483000 54565000 3562800 58069000 38565000 33797000 33165000 47582000 46384000 39736000 44417000 7 7 7 7 7 7 7 7 7 7 7 19967000000 11606000000 8361200000 21278 783 19560 110990;110991;110992;110993;110994;110995;110996;110997;110998;110999;111000;111001;111002;111003;111004;111005 134607;134608;134609;134610;134611;134612;134613;134614;134615;134616;134617;134618;134619;134620;134621;134622;134623;134624;134625 134620 19 VTPVDYLLGVADLTGELMR Oxidation (M) 2077.0765 0.076542347 2587 Q99598 TSNAX Translin-associated protein X yes yes 0 0 1 0 By MS/MS 6 0 1 1 82.576 82.586 3 0.006348 27172 20211116_3445_TMUAki_TMT10x_S_F6 51.611 33.473 442610 712060 0 724010 481170 417940 621880 323320 310050 388810 602090 412020 664470 25111 733190 464120 442530 613790 335460 339430 377030 571780 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 442610 712060 0 724010 481170 417940 621880 323320 310050 388810 602090 412020 664470 25111 733190 464120 442530 613790 335460 339430 377030 571780 1 1 0 1 1 1 1 1 1 1 1 49785000 0 49785000 21279 2587 19561 111006 134626 134626 2819 1 VTQDELK Unmodified 831.4338 0.43379771 729 P19338 NCL Nucleolin yes yes 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 35.833 35.763 2 0.023306 8429 20211116_3440_TMUAki_TMT10x_S_F2 84.476 20.99 169700 278540 0 271180 146560 139710 190380 122350 131590 129650 203170 157990 259880 12398 275200 141540 150040 189000 125490 138980 126320 193780 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 169700 278540 0 271180 146560 139710 190380 122350 131590 129650 203170 157990 259880 12398 275200 141540 150040 189000 125490 138980 126320 193780 1 1 0 1 1 1 1 1 1 1 1 16005000 0 16005000 21280 729 19562 111007;111008 134627 134627 1 VTQDELKEVFEDAAEIR Unmodified 1990.9848 0.98475045 729 P19338 NCL Nucleolin yes yes 0 0 0 1 By MS/MS By MS/MS 2.39 1.06 15 37 24 5 2 2 47 38 49.767 49.696 2;3 1.3636E-43 26980 20211116_3429_TMUAki_TMT10x_P_F2 234.51 199.41 465310000 815670000 2895200 581000000 684440000 912610000 585280000 699570000 556250000 678940000 676930000 433260000 760230000 41820000 614250000 653850000 904460000 597960000 721410000 571440000 663940000 649270000 96 96 51 96 96 96 96 96 96 96 96 217510000 374440000 1411700 266220000 246730000 553560000 240420000 337210000 220280000 316200000 308420000 202520000 348990000 17960000 283530000 236410000 541340000 243570000 353140000 228110000 309680000 294790000 53 53 25 53 53 53 53 53 53 53 53 247800000 441230000 1483500 314770000 437710000 359050000 344870000 362360000 335960000 362740000 368510000 230730000 411250000 23860000 330710000 417440000 363120000 354390000 368270000 343330000 354250000 354480000 43 43 26 43 43 43 43 43 43 43 43 133820000000 77185000000 56636000000 21281 729 19563 111009;111010;111011;111012;111013;111014;111015;111016;111017;111018;111019;111020;111021;111022;111023;111024;111025;111026;111027;111028;111029;111030;111031;111032;111033;111034;111035;111036;111037;111038;111039;111040;111041;111042;111043;111044;111045;111046;111047;111048;111049;111050;111051;111052;111053;111054;111055;111056;111057;111058;111059;111060;111061;111062;111063;111064;111065;111066;111067;111068;111069;111070;111071;111072;111073;111074;111075;111076;111077;111078;111079;111080;111081;111082;111083;111084;111085;111086;111087;111088;111089;111090;111091;111092;111093 134628;134629;134630;134631;134632;134633;134634;134635;134636;134637;134638;134639;134640;134641;134642;134643;134644;134645;134646;134647;134648;134649;134650;134651;134652;134653;134654;134655;134656;134657;134658;134659;134660;134661;134662;134663;134664;134665;134666;134667;134668;134669;134670;134671;134672;134673;134674;134675;134676;134677;134678;134679;134680;134681;134682;134683;134684;134685;134686;134687;134688;134689;134690;134691;134692;134693;134694;134695;134696;134697;134698;134699;134700;134701;134702;134703;134704;134705;134706;134707;134708;134709;134710;134711;134712;134713;134714;134715;134716;134717;134718;134719;134720;134721;134722;134723;134724;134725;134726;134727;134728;134729;134730;134731;134732;134733;134734;134735;134736;134737;134738;134739;134740;134741 134657 114 VTQLDPKEEEVSLQGINTR Unmodified 2155.1121 0.11207623 3356 Q9Y6W5;Q9Y6W5-2 WASF2 Wiskott-Aldrich syndrome protein family member 2 yes no 0 0 0 1 By MS/MS 4 0 1 1 56.475 56.62 3 0.00064971 17084 20211116_3431_TMUAki_TMT10x_P_F4 66.76 49.06 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21282 3356 19564 111094 134742 134742 1 VTQSAYAQIVQFGMNEK Oxidation (M) 1928.9302 0.93021246 3305 Q9Y4W6 AFG3L2 AFG3-like protein 2 yes yes 0 0 1 0 By MS/MS 8 0 1 1 68.348 68.226 3 0.00020265 21036 20211116_3447_TMUAki_TMT10x_S_F8 68.243 49.878 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21283 3305 19565 111095 134743 134743 3269 1 VTQSNFAVGYK Unmodified 1212.6139 0.61388734 760 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6 2.92 1 1 2 2 2 48.725 48.931 2 4.2575E-35 15612 20211116_3439_TMUAki_TMT10x_S_F1 245.58 201.13 8506700 12485000 31209 16514000 25711000 14742000 10266000 9773200 13101000 8544700 12803000 7920200 11665000 899090 16536000 24262000 15016000 11308000 10151000 13193000 8395800 12360000 4 4 1 4 4 4 4 4 4 4 4 5969900 8434400 31209 11462000 23343000 12584000 7653400 6462300 9052600 5847500 8666900 5558300 7881500 710160 11496000 21986000 12613000 8626900 6861000 9134600 5736300 8372600 2 2 1 2 2 2 2 2 2 2 2 2536800 4050900 0 5051700 2367800 2157600 2612400 3310900 4048300 2697200 4136300 2361800 3783700 188930 5039600 2275200 2402500 2681600 3289700 4058700 2659500 3987400 2 2 0 2 2 2 2 2 2 2 2 802810000 576050000 226760000 21284 760 19566 111096;111097;111098;111099 134744;134745;134746;134747;134748 134746 5 VTRLHEGMEYTFRVSAENK Oxidation (M) 2282.1114 0.11136472 2330 Q8WZ42-9;Q8WZ42-7;Q8WZ42-12;Q8WZ42;Q8WZ42-3;Q8WZ42-10;Q8WZ42-5;Q8WZ42-11;Q8WZ42-4;Q8WZ42-2;Q8WZ42-8;Q8WZ42-13 TTN Titin yes no 0 0 1 2 By MS/MS 2 0 1 1 46.678 46.624 4 0.01317 12899 20211116_3440_TMUAki_TMT10x_S_F2 44.816 21.914 821820 1423500 29652 1596000 944990 732040 664200 1023100 1072200 1072800 1260000 765420 1328900 97494 1603100 900840 805590 701040 1027000 1079600 1045700 1209700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 821820 1423500 29652 1596000 944990 732040 664200 1023100 1072200 1072800 1260000 765420 1328900 97494 1603100 900840 805590 701040 1027000 1079600 1045700 1209700 1 1 1 1 1 1 1 1 1 1 1 127030000 0 127030000 21285 2330 19567 111100 134749 134749 2675 1 VTSAHKGPDETLR Unmodified 1409.7263 0.72629134 767 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 0 1 By MS/MS 4.67 0.471 1 2 3 29.412 29.378 3;4 2.7613E-07 6455 20211116_3433_TMUAki_TMT10x_P_F5 120.66 97.806 836050 1384000 6594 1295200 1357500 1870600 883500 800710 827290 798810 1002000 778490 1291100 82001 1336200 1290100 1846100 919220 868050 850290 780240 961210 3 3 2 3 3 3 3 3 3 3 3 836050 1384000 6594 1295200 1357500 1870600 883500 800710 827290 798810 1002000 778490 1291100 82001 1336200 1290100 1846100 919220 868050 850290 780240 961210 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 62874000 62874000 0 21286 767 19568 111101;111102;111103 134750;134751;134752 134751 3 VTSAVEALLSADSASR Unmodified 1575.8104 0.8104149 1036 P45974;P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 0 By MS/MS 6 0 1 1 77.453 77.422 2 7.1221E-06 25057 20211116_3445_TMUAki_TMT10x_S_F6 89.231 66.589 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21287 1036 19569 111104 134753 134753 1 VTSIADRLNVDFALIHK Unmodified 1911.0578 0.057796236 1279 P60891;P60891-2 PRPS1 Ribose-phosphate pyrophosphokinase 1 yes no 0 0 0 1 By matching By MS/MS 2 0 2 1 1 70.005 69.782 4 6.368E-11 22399 20211116_3440_TMUAki_TMT10x_S_F2 131.82 81.15 5772000 10073000 105320 8239100 9274900 8990000 7545100 10573000 9063800 9556200 9029400 5374900 9392400 601150 8546000 8854500 9147700 7790800 10640000 9153200 9375000 8711400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5772000 10073000 105320 8239100 9274900 8990000 7545100 10573000 9063800 9556200 9029400 5374900 9392400 601150 8546000 8854500 9147700 7790800 10640000 9153200 9375000 8711400 2 2 1 2 2 2 2 2 2 2 2 2019000000 933840000 1085200000 21288 1279 19570 111105;111106 134754;134755 134755 2 VTSLTACLVDQSLR Unmodified 1561.8134 0.81339179 487 P04216 THY1 Thy-1 membrane glycoprotein yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 69.867 69.699 2;3 1.3187E-29 22183 20211116_3436_TMUAki_TMT10x_P_F8 205.97 174.9 3905400 6706400 147620 6524600 5078300 4561100 4865800 4657200 4498100 4507400 5227900 3637500 6257100 477800 6639700 4873000 4769900 4935300 4725800 4618000 4408300 5020500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3905400 6706400 147620 6524600 5078300 4561100 4865800 4657200 4498100 4507400 5227900 3637500 6257100 477800 6639700 4873000 4769900 4935300 4725800 4618000 4408300 5020500 2 2 2 2 2 2 2 2 2 2 2 467590000 0 467590000 21289 487 19571 111107;111108;111109;111110 134756;134757;134758;134759;134760 134757 5 VTSSIPVFDLQDGGRK Unmodified 1717.8999 0.89989861 2076 Q7Z3K3;Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-6;Q7Z3K3-3 POGZ Pogo transposable element with ZNF domain yes no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 58.595 58.942 3 3.0163E-07 17774 20211116_3436_TMUAki_TMT10x_P_F8 106.6 68.303 12358000 20367000 205900 22691000 14324000 16326000 12716000 16106000 15963000 15296000 17727000 11508000 19013000 1244000 22889000 13706000 17019000 13083000 16362000 16160000 14973000 17046000 3 3 3 3 3 3 3 3 3 3 3 3253000 4660300 26755 5336900 5029500 7184500 4117400 4217800 3965400 3946200 4381000 3029100 4351100 319510 5424400 4801200 7138500 4219400 4429900 4055500 3865200 4213300 1 1 1 1 1 1 1 1 1 1 1 9105200 15706000 179140 17354000 9294100 9141200 8598700 11888000 11998000 11350000 13346000 8479200 14662000 924480 17465000 8905000 9880800 8863600 11933000 12105000 11107000 12833000 2 2 2 2 2 2 2 2 2 2 2 1575100000 821810000 753290000 21290 2076 19572 111111;111112 134761;134762;134763 134761 3 VTSVVFHPSQDLVFSASPDATIR Unmodified 2472.2649 0.26488848 3182 Q9UMS4 PRPF19 Pre-mRNA-processing factor 19 yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 2.62 1 1 1 1 2 68.637 68.946 3 1.4352E-12 21292 20211116_3447_TMUAki_TMT10x_S_F8 111.97 96.553 1290200 2477300 3640.8 2262300 1695900 1498200 1447700 1387600 1296900 1428700 1684700 1201300 2310800 116040 2311700 1620100 1570900 1476800 1417600 1339800 1393700 1613200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1290200 2477300 3640.8 2262300 1695900 1498200 1447700 1387600 1296900 1428700 1684700 1201300 2310800 116040 2311700 1620100 1570900 1476800 1417600 1339800 1393700 1613200 1 1 1 1 1 1 1 1 1 1 1 440850000 0 440850000 21291 3182 19573 111113;111114;111115 134764;134765;134766 134766 3 VTTMDAELEFAIQPNTTGK Oxidation (M) 2080.9987 0.99868596 682;926 P15311;P26038;P35241;P35241-5;P35241-3 EZR;MSN;RDX Ezrin;Moesin;Radixin no no 0 0 1 0 By MS/MS By MS/MS 3.33 1.11 2 1 2 1 2 4 66.2 66.113 3 9.8358E-18 21469 20211116_3442_TMUAki_TMT10x_S_F4 148.52 133.24 19700000 32901000 496680 31614000 21730000 35195000 23766000 26829000 25063000 25389000 27030000 18346000 30695000 2117500 32396000 20917000 35446000 24041000 27657000 25510000 24856000 26014000 8 8 7 8 8 8 8 8 8 8 8 12711000 20821000 256030 20093000 13618000 26983000 15459000 16929000 15875000 16063000 17169000 11837000 19426000 1298100 20653000 13119000 26838000 15598000 17694000 16178000 15724000 16522000 5 5 4 5 5 5 5 5 5 5 5 6988300 12080000 240650 11521000 8112300 8212200 8306800 9899600 9188400 9326200 9861200 6508600 11270000 819400 11743000 7797900 8608000 8443000 9962900 9332900 9132100 9491900 3 3 3 3 3 3 3 3 3 3 3 5006900000 2478500000 2528400000 21292 682;926 19574 111116;111117;111118;111119;111120;111121 134767;134768;134769;134770;134771;134772;134773;134774;134775;134776 134774 767 10 VTTMDAELEFAIQPNTTGK Unmodified 2065.0038 0.003771334 682;926 P15311;P26038;P35241;P35241-5;P35241-3 EZR;MSN;RDX Ezrin;Moesin;Radixin no no 0 0 0 0 By MS/MS 5 0 1 1 75.928 75.939 3 0.0021547 24165 20211116_3444_TMUAki_TMT10x_S_F5 59.585 41.722 5451800 9412800 100140 9157100 6836600 7353000 7013000 6414700 5404000 6776000 7576700 5077000 8782200 564720 9332800 6565700 7581000 7054500 6580200 5645100 6602900 7241700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5451800 9412800 100140 9157100 6836600 7353000 7013000 6414700 5404000 6776000 7576700 5077000 8782200 564720 9332800 6565700 7581000 7054500 6580200 5645100 6602900 7241700 2 2 2 2 2 2 2 2 2 2 2 174900000 0 174900000 21293 682;926 19574 111122 134777;134778 134777 2 VTTQTSLPLFR Unmodified 1261.703 0.7030367 1651 Q13596;Q13596-2;Q13596-3 SNX1 Sorting nexin-1 yes no 0 0 0 0 By MS/MS 3 0 1 1 59.698 59.28 2 2.3311E-06 20961 20211116_3441_TMUAki_TMT10x_S_F3 128.03 93.957 2467600 4240300 42905 4545500 2639200 2508200 2279600 3101200 3332900 3216400 3587600 2297900 3957800 246970 4585100 2524200 2694200 2363700 3126600 3353600 3136600 3453000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2467600 4240300 42905 4545500 2639200 2508200 2279600 3101200 3332900 3216400 3587600 2297900 3957800 246970 4585100 2524200 2694200 2363700 3126600 3353600 3136600 3453000 1 1 1 1 1 1 1 1 1 1 1 128400000 0 128400000 21294 1651 19575 111123 134779 134779 1 VTTVTEIGKDVIGLR Unmodified 1599.9196 0.91957142 1207 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 1 By MS/MS By MS/MS 4.38 3.16 3 1 2 2 4 4 69.151 69.205 2;3 5.0632E-30 21926 20211116_3436_TMUAki_TMT10x_P_F8 208.66 176.03 42219000 75538000 479590 55759000 60845000 95203000 60317000 75052000 66514000 69726000 66540000 39313000 70411000 4160200 58870000 58354000 94101000 61401000 77166000 67396000 68318000 64188000 8 8 6 8 8 8 8 8 8 8 8 26438000 46247000 410920 35230000 36441000 72001000 41502000 46195000 40575000 42033000 40613000 24619000 43112000 2704500 37268000 35093000 70502000 41804000 48145000 41320000 41223000 39177000 5 5 4 5 5 5 5 5 5 5 5 15781000 29290000 68669 20529000 24404000 23202000 18815000 28858000 25939000 27693000 25927000 14694000 27298000 1455700 21602000 23261000 23599000 19597000 29020000 26076000 27095000 25011000 3 3 2 3 3 3 3 3 3 3 3 5974900000 4263100000 1711800000 21295 1207 19576 111124;111125;111126;111127;111128;111129;111130;111131 134780;134781;134782;134783;134784;134785;134786;134787;134788;134789;134790 134784 11 VTTVVATPGQGPDRPQEVSYTDTK Unmodified 2545.266 0.26601069 1124 P49841;P49841-2 GSK3B Glycogen synthase kinase-3 beta yes no 0 0 0 1 By MS/MS 5 0 1 1 46.263 46.421 4 4.0272E-05 13227 20211116_3433_TMUAki_TMT10x_P_F5 71.651 57.037 1091200 2160900 58283 2173300 3026100 3822500 1924600 2464800 2545600 2156000 2059100 1016500 2016400 171890 2240900 2877400 3761900 2029000 2565300 2545200 2118400 2001400 1 1 1 1 1 1 1 1 1 1 1 1091200 2160900 58283 2173300 3026100 3822500 1924600 2464800 2545600 2156000 2059100 1016500 2016400 171890 2240900 2877400 3761900 2029000 2565300 2545200 2118400 2001400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 320400000 320400000 0 21296 1124 19577 111132 134791 134791 1 VTVAGGVHISGLHTESAPR Unmodified 1886.9963 0.99625861 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 38.384 38.28 4 8.6259E-07 11305 20211116_3430_TMUAki_TMT10x_P_F3 99.413 81.274 130170 175740 2773.3 183240 150680 200190 110310 116870 124330 130760 146540 121220 164010 13664 186660 143630 201020 114440 123440 126660 127130 140670 1 1 1 1 1 1 1 1 1 1 1 130170 175740 2773.3 183240 150680 200190 110310 116870 124330 130760 146540 121220 164010 13664 186660 143630 201020 114440 123440 126660 127130 140670 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 47297000 47297000 0 21297 1092 19578 111133;111134 134792 134792 1 VTVAGLAGKDPVQCSR Unmodified 1656.8617 0.86173896 2578 Q99497 PARK7 Protein deglycase DJ-1 yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 2.87 4 4 2 2 5 7 47.105 47.131 3;4 4.9314E-37 12754 20211116_3428_TMUAki_TMT10x_P_F1 218.36 199.58 42011000 65409000 400030 90885000 95744000 86115000 44101000 71429000 77828000 59219000 69382000 39119000 61129000 4558800 90847000 90527000 87693000 48478000 73000000 77401000 58339000 67192000 12 12 8 12 12 12 12 12 12 12 12 23603000 35857000 247920 49517000 83812000 73917000 33952000 39883000 43786000 32980000 38710000 21979000 33509000 3022900 49916000 79124000 73032000 37351000 42062000 43934000 32494000 37499000 6 6 5 6 6 6 6 6 6 6 6 18408000 29552000 152110 41367000 11933000 12198000 10149000 31546000 34042000 26239000 30673000 17140000 27620000 1535900 40931000 11403000 14661000 11128000 30938000 33466000 25845000 29693000 6 6 3 6 6 6 6 6 6 6 6 15449000000 10213000000 5236600000 21298 2578 19579 111135;111136;111137;111138;111139;111140;111141;111142;111143;111144;111145;111146 134793;134794;134795;134796;134797;134798;134799;134800;134801;134802;134803;134804;134805;134806 134793 14 VTVLFAGQHIAK Unmodified 1282.7398 0.73975656 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 2.83 1.07 1 1 2 2 4 2 54.142 54.038 3 1.6472E-15 17677 20211116_3430_TMUAki_TMT10x_P_F3 188.29 121.6 45388000 73411000 766660 75742000 74015000 86367000 51504000 57225000 56840000 53836000 64467000 42264000 68509000 4639400 77264000 70434000 86675000 53585000 59551000 57862000 52718000 61953000 10 10 7 10 10 10 10 10 10 10 10 31699000 50018000 231740 52239000 60774000 72691000 38436000 38359000 39200000 36554000 44680000 29515000 46680000 3012200 53441000 57710000 72020000 40179000 40679000 40040000 35775000 42932000 7 7 4 7 7 7 7 7 7 7 7 13689000 23393000 534920 23503000 13241000 13676000 13068000 18866000 17640000 17282000 19787000 12749000 21829000 1627100 23822000 12724000 14655000 13406000 18872000 17822000 16943000 19021000 3 3 3 3 3 3 3 3 3 3 3 4565700000 3013500000 1552200000 21299 755 19580 111147;111148;111149;111150;111151;111152 134807;134808;134809;134810;134811;134812;134813;134814;134815;134816 134809 10 VTVLGHVQR Unmodified 1007.5876 0.58761301 552 P08237;P08237-3 PFKM ATP-dependent 6-phosphofructokinase, muscle type no no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 32.638 32.653 3 2.2752E-06 8987 20211116_3439_TMUAki_TMT10x_S_F1 162.49 126.59 438120 733450 8088 703440 580220 648340 458790 457320 493440 414090 530950 407990 684270 45851 718920 553780 659590 472790 473320 501800 406200 511020 2 2 2 2 2 2 2 2 2 2 2 233150 373510 3679.1 358400 348770 442470 232610 217850 228950 195790 258780 217110 348470 24378 367950 331720 440530 241900 232170 234130 192130 248710 1 1 1 1 1 1 1 1 1 1 1 204970 359930 4408.9 345030 231450 205860 226180 239470 264490 218300 272160 190880 335800 21473 350960 222060 219060 230890 241150 267670 214070 262310 1 1 1 1 1 1 1 1 1 1 1 65304000 42108000 23196000 21300 552 19581 111153;111154 134817;134818 134818 2 VTVLTHCNTGALATAGYGTALGVIR Unmodified 2515.3217 0.32169185 2681 Q9BV20 MRI1 Methylthioribose-1-phosphate isomerase yes yes 0 0 0 0 By MS/MS 4 0 1 1 65.395 65.229 3 1.287E-48 21119 20211116_3442_TMUAki_TMT10x_S_F4 208.69 179.73 2863700 5215300 0 5349000 4093600 3452000 3396500 3776100 3326700 3364500 3795100 2666200 4866900 231220 5419100 3906100 3641000 3479500 3810600 3404000 3302900 3646500 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2863700 5215300 0 5349000 4093600 3452000 3396500 3776100 3326700 3364500 3795100 2666200 4866900 231220 5419100 3906100 3641000 3479500 3810600 3404000 3302900 3646500 2 2 0 2 2 2 2 2 2 2 2 735730000 0 735730000 21301 2681 19582 111155 134819;134820 134819 2 VTVPLVR Unmodified 782.50142 0.50142377 3158 Q9UKM9;Q9UKM9-2 RALY RNA-binding protein Raly yes no 0 0 0 0 By MS/MS By MS/MS 4.86 3.09 2 1 2 2 3 4 45.047 45.114 2 0.0018308 12088 20211116_3436_TMUAki_TMT10x_P_F8 132.96 33.576 30027000 44483000 133010 46956000 48886000 48376000 33339000 36599000 39758000 35719000 40837000 27958000 41517000 2739900 47749000 46483000 48930000 34829000 37779000 40205000 34921000 39361000 8 8 3 8 8 8 8 8 8 8 8 17916000 25835000 84709 27790000 36614000 37407000 21680000 22355000 24911000 21852000 24930000 16682000 24114000 1769900 28356000 34734000 37176000 22872000 23474000 25202000 21362000 24048000 3 3 1 3 3 3 3 3 3 3 3 12112000 18648000 48298 19166000 12272000 10969000 11659000 14244000 14847000 13867000 15907000 11277000 17403000 970000 19393000 11749000 11754000 11957000 14306000 15003000 13559000 15312000 5 5 2 5 5 5 5 5 5 5 5 2433600000 1376700000 1056900000 21302 3158 19583 111156;111157;111158;111159;111160;111161;111162 134821;134822;134823;134824;134825;134826;134827;134828 134824 8 VTVVCEPEDYVVVSTEMQSSESK Oxidation (M) 2617.1775 0.17751454 892 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 1 0 By MS/MS By MS/MS 2 0 2 1 1 65.716 65.45 3 8.5476E-08 21955 20211116_3429_TMUAki_TMT10x_P_F2 95.624 88.173 5251000 8483100 58420 9148400 5312300 8050900 5375300 5103700 5882200 5851400 6639200 4889500 7918100 354260 9269500 5097700 8203200 5464800 5360200 5988800 5684000 6381200 5 5 2 5 5 5 5 5 5 5 5 3429500 5519000 58420 5958600 3439500 6227000 3559000 3203100 3896400 3823900 4335200 3193600 5151500 220140 6051700 3304500 6259100 3614300 3427900 3964700 3709000 4168400 3 3 2 3 3 3 3 3 3 3 3 1821500 2964000 0 3189800 1872900 1823900 1816300 1900600 1985900 2027600 2304000 1695900 2766600 134120 3217700 1793200 1944100 1850500 1932300 2024100 1975000 2212800 2 2 0 2 2 2 2 2 2 2 2 840950000 486430000 354530000 21303 892 19584 111163;111164 134829;134830;134831;134832;134833 134830 1086 5 VTVVCEPEDYVVVSTEMQSSESK Unmodified 2601.1826 0.18259992 892 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 By MS/MS 2 0 1 1 72.806 72.692 3 0.0035362 23525 20211116_3440_TMUAki_TMT10x_S_F2 52.898 44.079 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21304 892 19584 111165 134834 134834 1 VTVVDVNESR Unmodified 1116.5775 0.57750184 283 O60701;O60701-2 UGDH UDP-glucose 6-dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.957 1 2 2 1 2 4 35.654 35.586 2 4.0689E-10 12296 20211116_3441_TMUAki_TMT10x_S_F3 196.52 158.96 9077800 14265000 135250 16167000 14839000 15861000 11012000 11393000 11785000 10021000 12853000 8453100 13318000 932950 16355000 14139000 16076000 11394000 11768000 11993000 9843100 12366000 8 8 6 8 8 8 8 8 8 8 8 6048000 9322900 69847 10667000 11934000 13005000 8028700 7532500 7993800 6640100 8613500 5631700 8704300 627950 10822000 11348000 12982000 8347000 7908000 8155800 6521900 8289900 3 3 2 3 3 3 3 3 3 3 3 3029700 4942600 65403 5500400 2904800 2855400 2983300 3860000 3791100 3380400 4239300 2821400 4614000 305000 5532400 2790900 3094600 3047000 3859500 3837300 3321200 4075600 5 5 4 5 5 5 5 5 5 5 5 812930000 449800000 363130000 21305 283 19585 111166;111167;111168;111169;111170;111171 134835;134836;134837;134838;134839;134840;134841;134842 134840 8 VTWAHPEFGQVLASCSFDR Unmodified 2206.0266 0.026572462 2441 Q96EE3-1;Q96EE3 SEH1L Nucleoporin SEH1 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 67.139 67.335 3 2.2675E-41 21187 20211116_3436_TMUAki_TMT10x_P_F8 213.36 198.16 8781900 14164000 0 13420000 10436000 12158000 11040000 6841700 6482900 7303300 10472000 8176300 13214000 683450 13725000 10018000 12344000 11025000 7238300 6936200 7113800 9978500 4 4 0 4 4 4 4 4 4 4 4 4418900 7320400 0 7008000 5036600 8245500 5961800 3483600 3434100 3715100 5350600 4114000 6829500 320180 7189900 4849000 8216600 5920700 3789100 3672200 3618800 5102200 2 2 0 2 2 2 2 2 2 2 2 4363000 6843800 0 6412300 5399900 3912300 5077700 3358100 3048800 3588200 5121500 4062300 6384400 363270 6534700 5168700 4127300 5104600 3449100 3264000 3495000 4876300 2 2 0 2 2 2 2 2 2 2 2 2405900000 1525300000 880630000 21306 2441 19586 111172;111173;111174 134843;134844;134845;134846 134844 4 VTYHPDGPEGQAYDVDFTPPFR Unmodified 2507.1394 0.13935361 1760 Q15046;Q15046-2 KARS Lysine--tRNA ligase yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.943 2 1 2 1 63.758 63.743 3 8.7811E-45 20004 20211116_3431_TMUAki_TMT10x_P_F4 206.74 190.42 10878000 18370000 128900 17883000 12225000 20345000 13531000 13375000 12162000 13395000 13143000 10129000 17139000 962420 18315000 11758000 20418000 13615000 13951000 12467000 13081000 12648000 7 7 4 7 7 7 7 7 7 7 7 8047000 13759000 63431 12857000 8842900 17193000 10174000 10149000 9337800 10220000 9413200 7492400 12835000 658990 13245000 8511200 17089000 10225000 10676000 9538900 9978600 9078300 5 5 2 5 5 5 5 5 5 5 5 2830700 4610500 65470 5026000 3382300 3152300 3356900 3226100 2823900 3174600 3730000 2636200 4303600 303430 5070000 3246400 3328600 3389900 3274800 2928300 3102600 3570100 2 2 2 2 2 2 2 2 2 2 2 2771000000 1880200000 890820000 21307 1760 19587 111175;111176;111177 134847;134848;134849;134850;134851;134852;134853 134848 7 VTYHPDGPEGQAYDVDFTPPFRR Unmodified 2663.2405 0.24046464 1760 Q15046;Q15046-2 KARS Lysine--tRNA ligase yes no 0 0 0 1 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 55.077 55.203 4 9.4175E-57 15919 20211116_3445_TMUAki_TMT10x_S_F6 222.06 217.31 34753000 61625000 0 53066000 49072000 67895000 47173000 43643000 40575000 41105000 46726000 32355000 57471000 2039700 54962000 46979000 67707000 47744000 45521000 41785000 40250000 44885000 8 8 0 8 8 8 8 8 8 8 8 20757000 35626000 0 31843000 32550000 54056000 30893000 28541000 25062000 23976000 28344000 19325000 33228000 1644200 33084000 31153000 53126000 31242000 30169000 25867000 23605000 27240000 5 5 0 5 5 5 5 5 5 5 5 13996000 26000000 0 21223000 16522000 13839000 16280000 15102000 15514000 17129000 18383000 13030000 24243000 395420 21878000 15826000 14582000 16502000 15352000 15918000 16645000 17644000 3 3 0 3 3 3 3 3 3 3 3 4192700000 2756300000 1436500000 21308 1760 19588 111178;111179;111180 134854;134855;134856;134857;134858;134859;134860;134861 134859 8 VTYKAPVPTGEVYFADSFDR Unmodified 2261.1004 0.10044891 834 P27824;P27824-2 CANX Calnexin yes no 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 66.511 66.804 3 2.9824E-18 20707 20211116_3445_TMUAki_TMT10x_S_F6 151.01 142.52 30647000 58220000 585010 35751000 61682000 68486000 46480000 62579000 59439000 57156000 54386000 28539000 54242000 3503200 38548000 58796000 67617000 48342000 63762000 59722000 56045000 52620000 7 7 6 7 7 7 7 7 7 7 7 8651700 15622000 180940 10899000 10755000 22161000 13643000 14946000 14773000 14332000 13689000 8056900 14559000 915380 11621000 10396000 21719000 13722000 15542000 14941000 14022000 13238000 2 2 2 2 2 2 2 2 2 2 2 21995000 42598000 404060 24852000 50927000 46325000 32837000 47633000 44666000 42824000 40697000 20482000 39683000 2587800 26928000 48400000 45898000 34620000 48220000 44781000 42022000 39382000 5 5 4 5 5 5 5 5 5 5 5 5370200000 2142000000 3228200000 21309 834 19589 111181;111182;111183 134862;134863;134864;134865;134866;134867;134868 134865 7 VTYLVHNFEEGGGVAMGMYNQDK 2 Oxidation (M) 2590.1468 0.14682353 364 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 0 0 2 0 By MS/MS By MS/MS 5.75 1.09 1 2 1 1 3 61.796 61.997 3;4 7.0498E-12 20725 20211116_3446_TMUAki_TMT10x_S_F7 119.06 110.77 9733600 16708000 460570 17110000 13528000 15363000 12213000 16822000 16314000 14914000 15569000 9066300 15592000 1289400 17401000 12966000 15791000 12584000 16973000 16391000 14645000 15042000 3 3 3 3 3 3 3 3 3 3 3 3023000 4676000 104860 5293300 5088100 7861800 4380600 5167500 4824200 4624200 4711400 2815500 4365500 377280 5394800 4867300 7790100 4494200 5373700 4884400 4538600 4548400 1 1 1 1 1 1 1 1 1 1 1 6710500 12032000 355710 11817000 8439600 7500700 7832800 11654000 11490000 10290000 10858000 6250800 11226000 912070 12006000 8098600 8000800 8090100 11599000 11506000 10106000 10494000 2 2 2 2 2 2 2 2 2 2 2 2058600000 756920000 1301700000 21310 364 19590 111184;111185;111186;111187 134869;134870;134871;134872 134872 287;288 4 VTYLVHNFEEGGGVAMGMYNQDK Oxidation (M) 2574.1519 0.15190891 364 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 0 0 1 0 By MS/MS 6.5 0.5 1 1 2 68.916 68.88 3 6.4107E-06 22799 20211116_3435_TMUAki_TMT10x_P_F7 80.224 67.743 1545700 2836500 0 2427500 1634100 3120400 1708100 1553500 1450700 1576600 1843600 1438900 2645300 95430 2515700 1566500 3100900 1720800 1659300 1501000 1538800 1766300 1 1 0 1 1 1 1 1 1 1 1 1545700 2836500 0 2427500 1634100 3120400 1708100 1553500 1450700 1576600 1843600 1438900 2645300 95430 2515700 1566500 3100900 1720800 1659300 1501000 1538800 1766300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 434890000 434890000 0 21311 364 19590 111188;111189 134873;134874 134874 287;288 2 VTYMEEERNFTTEQVTAMLLSK 2 Oxidation (M) 2651.2459 0.24586887 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 2 1 By MS/MS By MS/MS 5.2 0.748 1 2 2 2 3 68.384 68.352 3;4 2.503E-05 20994 20211116_3434_TMUAki_TMT10x_P_F6 75.797 61.184 20027000 34899000 277180 30607000 24662000 36077000 24865000 31144000 30861000 31457000 29842000 18649000 32548000 1936100 31609000 23665000 36305000 25396000 31923000 31097000 30710000 28819000 7 7 6 7 7 7 7 7 7 7 7 9048500 14722000 55815 13454000 10218000 20356000 11656000 12614000 12401000 12762000 13076000 8425100 13732000 771050 13918000 9834400 20138000 11771000 13220000 12607000 12458000 12594000 3 3 2 3 3 3 3 3 3 3 3 10979000 20177000 221360 17152000 14443000 15721000 13209000 18530000 18461000 18695000 16765000 10224000 18816000 1165000 17690000 13831000 16167000 13625000 18703000 18490000 18252000 16225000 4 4 4 4 4 4 4 4 4 4 4 2675200000 1137000000 1538200000 21312 916 19591 111190;111191;111192;111193;111194 134875;134876;134877;134878;134879;134880;134881 134876 1155;1158 7 VTYTPMAPGSYLISIK Oxidation (M) 1755.9117 0.91170885 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 1 0 By MS/MS By MS/MS 2.67 0.667 4 4 1 5 4 72.62 72.409 2;3 4.4175E-15 25178 20211116_3430_TMUAki_TMT10x_P_F3 144.18 114.12 26212000 46225000 64407 40471000 29731000 49923000 33344000 32841000 31652000 35298000 34347000 24404000 43112000 1902300 41835000 28577000 49892000 33581000 34326000 32370000 34372000 33050000 9 9 3 9 9 9 9 9 9 9 9 15234000 26512000 8996.9 22989000 16144000 34193000 18696000 18299000 17838000 19813000 18999000 14183000 24726000 1112700 23869000 15533000 33785000 18804000 19453000 18225000 19288000 18292000 5 5 1 5 5 5 5 5 5 5 5 10978000 19713000 55410 17482000 13587000 15730000 14649000 14542000 13815000 15485000 15347000 10221000 18386000 789670 17966000 13045000 16106000 14777000 14873000 14145000 15084000 14758000 4 4 2 4 4 4 4 4 4 4 4 8238000000 4838600000 3399400000 21313 755 19592 111195;111196;111197;111198;111199;111200;111201;111202;111203 134882;134883;134884;134885;134886;134887;134888;134889;134890;134891 134884 873 10 VTYTPMAPGSYLISIK Unmodified 1739.9168 0.91679423 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 4 2 1 5 77.461 77.378 2;3 1.0329E-14 28213 20211116_3441_TMUAki_TMT10x_S_F3 134.49 101.08 7198900 12191000 278800 11655000 8189500 8981800 8953300 5828700 5051700 6032700 8424000 6705000 11374000 870540 11888000 7888600 9244100 8921000 6091500 5429600 5883500 8022000 2 2 2 2 2 2 2 2 2 2 2 2803100 4714500 39660 4375200 3211600 4856900 3487900 2809500 2318300 2663800 3451300 2610200 4397900 275080 4494600 3088800 4872100 3487300 2955500 2449800 2607600 3294300 1 1 1 1 1 1 1 1 1 1 1 4395900 7476700 239140 7280200 4977900 4124900 5465400 3019200 2733400 3368900 4972700 4094800 6975900 595470 7393700 4799800 4372000 5433700 3136000 2979800 3275800 4727700 1 1 1 1 1 1 1 1 1 1 1 1345300000 436800000 908450000 21314 755 19592 111204;111205;111206;111207;111208;111209 134892;134893;134894;134895;134896 134893 5 VVACNLYPFVK Unmodified 1308.69 0.69002918 892 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 0 0 By MS/MS By MS/MS 2.8 0.4 1 4 2 3 69.935 69.614 2;3 2.4169E-23 25115 20211116_3441_TMUAki_TMT10x_S_F3 246.57 202.76 24775000 41805000 78257 42353000 33419000 36766000 26554000 33085000 29612000 30039000 33810000 23067000 39011000 2095800 43085000 31866000 37717000 27389000 33733000 30141000 29463000 32485000 7 7 1 7 7 7 7 7 7 7 7 10138000 16684000 78257 16692000 15183000 23424000 13668000 12963000 11730000 11649000 12680000 9439800 15568000 932410 17128000 14521000 23212000 13883000 13668000 12052000 11432000 12202000 3 3 1 3 3 3 3 3 3 3 3 14637000 25121000 0 25661000 18236000 13342000 12887000 20123000 17882000 18389000 21130000 13627000 23442000 1163300 25956000 17344000 14504000 13506000 20065000 18089000 18031000 20283000 4 4 0 4 4 4 4 4 4 4 4 4426000000 2132600000 2293400000 21315 892 19593 111210;111211;111212;111213;111214 134897;134898;134899;134900;134901;134902;134903 134901 7 VVAEVGDIPTVLVQNK Unmodified 1679.9458 0.94578617 3167 Q9ULC3 RAB23 Ras-related protein Rab-23 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 75.389 75.52 3 0.022914 25897 20211116_3435_TMUAki_TMT10x_P_F7 46.319 27.486 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21316 3167 19594 111215;111216 134904;134905 134904 2 VVAEVYDQERFDNSDLSA Unmodified 2055.9385 0.93852854 3124 Q9UHX1-6;Q9UHX1-5;Q9UHX1-4;Q9UHX1-2;Q9UHX1;Q9UHX1-3 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 0 0 0 1 By MS/MS 1 0 2 2 63.975 63.723 2;3 1.0985E-39 21665 20211116_3439_TMUAki_TMT10x_S_F1 184.98 169.59 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21317 3124 19595 111217;111218 134906;134907 134906 2 VVALIGVATAADTLVTK Unmodified 1640.9713 0.97127264 2952 Q9NUJ1;Q9NUJ1-2;Q9NUJ1-3 ABHD10 Mycophenolic acid acyl-glucuronide esterase, mitochondrial yes no 0 0 0 0 By MS/MS 3 0 1 1 80.468 80.405 3 9.9112E-07 28417 20211116_3430_TMUAki_TMT10x_P_F3 101.42 90.316 2212800 3353900 0 3148400 1974200 3661200 2199800 1886000 2023500 2176400 2500000 2060300 3128800 169500 3234100 1897900 3658300 2214100 2015800 2083200 2113600 2396900 1 1 0 1 1 1 1 1 1 1 1 2212800 3353900 0 3148400 1974200 3661200 2199800 1886000 2023500 2176400 2500000 2060300 3128800 169500 3234100 1897900 3658300 2214100 2015800 2083200 2113600 2396900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 321010000 321010000 0 21318 2952 19596 111219 134908 134908 1 VVANSKESYELR Unmodified 1393.7201 0.72014333 931 P35268 RPL22 60S ribosomal protein L22 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0 2 1 1 37.094 37.163 3 1.3316E-07 8361 20211116_3444_TMUAki_TMT10x_S_F5 134.61 104.61 1664500 3104400 35521 2523800 3301600 3004300 2129700 2823500 3122000 2348100 2823500 1550000 2894600 194030 2622900 3138500 3026900 2252200 2865600 3122100 2312800 2733000 3 3 3 3 3 3 3 3 3 3 3 709970 1273600 17471 1108500 1942200 1932200 1097600 1177000 1314400 995280 1143600 661180 1187800 92402 1154900 1842100 1900600 1164200 1229400 1321600 979530 1108500 1 1 1 1 1 1 1 1 1 1 1 954490 1830800 18050 1415300 1359400 1072100 1032100 1646500 1807700 1352800 1679900 888860 1706700 101630 1468000 1296400 1126200 1088000 1636300 1800500 1333300 1624500 2 2 2 2 2 2 2 2 2 2 2 107880000 69742000 38139000 21319 931 19597 111220;111221 134909;134910;134911 134910 3 VVAPTISSPVCQEQLVEAGR Unmodified 2139.0994 0.099403054 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 2 2 60.673 60.761 3 2.7896E-32 17918 20211116_3444_TMUAki_TMT10x_S_F5 188.71 181.08 23041000 36836000 89783 39334000 27976000 23519000 22300000 23252000 21502000 21769000 27054000 21453000 34381000 1888900 39714000 26676000 24929000 22892000 23610000 22107000 21322000 25926000 7 7 4 7 7 7 7 7 7 7 7 6280100 9221800 13169 10244000 8142900 9759000 6817400 6280900 6014800 5505700 6995200 5846500 8608700 435590 10371000 7767300 9893600 6959700 6538300 6189000 5409100 6717700 2 2 1 2 2 2 2 2 2 2 2 16761000 27614000 76614 29090000 19833000 13760000 15483000 16971000 15488000 16264000 20059000 15606000 25773000 1453300 29343000 18909000 15036000 15933000 17072000 15918000 15913000 19208000 5 5 3 5 5 5 5 5 5 5 5 2875000000 1152600000 1722400000 21320 3293 19598 111222;111223;111224;111225 134912;134913;134914;134915;134916;134917;134918;134919 134915 8 VVAQSTNSEEIIEGEYNTVMLAIGR Oxidation (M) 2738.3433 0.34327473 1871 Q16881;Q16881-3;Q16881-4;Q16881-5;Q16881-2;Q16881-6;Q16881-7 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 0 0 1 0 By MS/MS By matching 1.67 0.943 2 1 2 1 97.727 97.735 3 6.516E-06 33010 20211116_3428_TMUAki_TMT10x_P_F1 78.236 69.139 72369 121180 1913.7 116100 63433 138420 81726 63086 79627 75625 81533 67392 113060 6976.8 119130 61354 137940 81876 68318 81166 73343 78593 2 2 1 2 2 2 2 2 2 2 2 72369 121180 1913.7 116100 63433 138420 81726 63086 79627 75625 81533 67392 113060 6976.8 119130 61354 137940 81876 68318 81166 73343 78593 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2724300 1770500 953730 21321 1871 19599 111226;111227;111228 134920;134921;134922 134921 2487 3 VVCVYGGTGISEQIAELKR Unmodified 2078.083 0.083024708 2049 Q7L014 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 0 0 0 1 By MS/MS By MS/MS 5 3.29 2 1 2 3 2 66.629 66.709 3 1.073E-79 20407 20211116_3447_TMUAki_TMT10x_S_F8 300.37 284.75 27433000 47035000 207890 44014000 34747000 43025000 31586000 34417000 29250000 33682000 36579000 25544000 43877000 2517100 45100000 33247000 43699000 32132000 35405000 30119000 32925000 35060000 6 6 3 6 6 6 6 6 6 6 6 13690000 22814000 165320 20955000 17322000 28728000 18039000 17348000 15122000 17232000 17714000 12748000 21281000 1297300 21625000 16635000 28531000 18170000 18209000 15603000 16835000 17008000 3 3 2 3 3 3 3 3 3 3 3 13742000 24221000 42565 23059000 17424000 14297000 13547000 17068000 14128000 16449000 18865000 12796000 22596000 1219800 23475000 16612000 15167000 13962000 17196000 14516000 16091000 18052000 3 3 1 3 3 3 3 3 3 3 3 4679300000 3123600000 1555700000 21322 2049 19600 111229;111230;111231;111232;111233 134923;134924;134925;134926;134927;134928 134928 6 VVDALGNAIDGKGPIGSK Unmodified 1709.9312 0.93119874 805 P25705;P25705-2 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 3 6 4 5 62.991 63.35 3;4 4.453E-12 20719 20211116_3435_TMUAki_TMT10x_P_F7 131.18 113.04 87954000 148390000 1460800 150790000 135920000 178220000 109360000 134890000 133020000 117960000 122900000 81904000 138470000 9216200 154070000 129740000 178890000 113050000 138830000 133930000 115900000 118870000 6 6 5 6 6 6 6 6 6 6 6 61090000 101730000 1218000 102670000 112310000 151680000 85727000 99481000 95844000 82349000 85943000 56889000 94925000 6808200 105410000 107080000 150330000 88660000 103270000 96711000 81132000 83212000 5 5 4 5 5 5 5 5 5 5 5 26865000 46660000 242750 48120000 23617000 26539000 23637000 35414000 37171000 35610000 36961000 25016000 43545000 2408000 48664000 22661000 28567000 24394000 35564000 37216000 34770000 35661000 1 1 1 1 1 1 1 1 1 1 1 6116500000 4134900000 1981600000 21323 805 19601 111234;111235;111236;111237;111238;111239;111240;111241;111242 134929;134930;134931;134932;134933;134934;134935;134936;134937 134929 9 VVDELNLLHTELAK Unmodified 1592.8774 0.87737225 2243 Q8NEU8;Q8NEU8-2;Q8NEU8-3 APPL2 DCC-interacting protein 13-beta yes no 0 0 0 0 By MS/MS 3 0 1 1 73.547 73.358 3 0.055483 25572 20211116_3430_TMUAki_TMT10x_P_F3 41.378 25.488 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21324 2243 19602 111243 134938 134938 1 VVDLEGSLK Unmodified 958.53351 0.53351176 2188 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 0 0 0 0 By MS/MS 4 0 1 1 56.941 57.085 2 9.0374E-05 17274 20211116_3431_TMUAki_TMT10x_P_F4 103.82 60.61 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21325 2188 19603 111244 134939 134939 1 VVDLLAPYAK Unmodified 1087.6277 0.6277465 518 P06576 ATP5B ATP synthase subunit beta, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 6.07 2.25 2 1 3 4 4 8 6 72.787 72.834 2;3 6.8178E-09 25353 20211116_3439_TMUAki_TMT10x_S_F1 177.32 127.5 65418000 107200000 759560 111340000 81610000 98252000 71589000 85703000 79984000 78813000 88004000 60915000 100040000 6204700 113100000 78036000 100620000 73400000 87564000 81288000 77257000 84646000 12 12 8 12 12 12 12 12 12 12 12 28335000 46323000 356880 46786000 41790000 62116000 37018000 37973000 35378000 33644000 38068000 26385000 43226000 2847400 47926000 39971000 61792000 37748000 39697000 36158000 33037000 36639000 5 5 3 5 5 5 5 5 5 5 5 37083000 60873000 402680 64554000 39820000 36135000 34571000 47730000 44607000 45169000 49936000 34530000 56815000 3357200 65171000 38065000 38826000 35652000 47867000 45130000 44220000 48006000 7 7 5 7 7 7 7 7 7 7 7 14975000000 8804300000 6171200000 21326 518 19604 111245;111246;111247;111248;111249;111250;111251;111252;111253;111254;111255;111256;111257;111258 134940;134941;134942;134943;134944;134945;134946;134947;134948;134949;134950;134951;134952;134953;134954 134947 15 VVDLLVIK Unmodified 897.5899 0.58990443 1260 P56556 NDUFA6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 75.585 75.606 2 0.0015808 24585 20211116_3436_TMUAki_TMT10x_P_F8 146.35 110.16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21327 1260 19605 111259;111260;111261 134955;134956;134957 134956 3 VVDLMAHMASK Unmodified 1200.5995 0.59949961 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 2 1 1 2 60.273 60.273 3 1.9775E-14 20346 20211116_3439_TMUAki_TMT10x_S_F1 147.71 112.16 2874500 4481500 21098 6045200 5848700 3189200 3411100 1164300 956180 1262000 2949900 2676600 4187600 299630 6014000 5548000 3379600 3511500 1288900 1150900 1228500 2783900 1 1 1 1 1 1 1 1 1 1 1 2874500 4481500 21098 6045200 5848700 3189200 3411100 1164300 956180 1262000 2949900 2676600 4187600 299630 6014000 5548000 3379600 3511500 1288900 1150900 1228500 2783900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 501820000 501820000 0 21328 489 19606 111262;111263;111264 134958;134959;134960 134959 3 VVDLMAHMASK 2 Oxidation (M) 1232.5893 0.58932885 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 2 0 By MS/MS By MS/MS 6.29 1.03 2 2 2 1 3 4 35.298 35.578 3 0.0032712 8874 20211116_3433_TMUAki_TMT10x_P_F5 67.456 53.037 3174100 4686800 23394 4964600 6460400 5896900 3725000 3379100 4017700 3163700 4000200 2955300 4374400 300950 5059000 6125200 5893300 3930500 3556300 4073900 3098700 3859400 7 7 3 7 7 7 7 7 7 7 7 2731100 3923400 18672 4221500 6079800 5456300 3227900 2876500 3416100 2646800 3332300 2542800 3662000 262250 4304000 5757200 5424400 3429100 3047900 3464000 2594400 3217100 4 4 2 4 4 4 4 4 4 4 4 443030 763500 4721.9 743090 380610 440590 497150 502660 601670 516930 667900 412530 712350 38698 755000 368060 468900 501430 508360 609870 504280 642240 3 3 1 3 3 3 3 3 3 3 3 326820000 237030000 89792000 21329 489 19606 111265;111266;111267;111268;111269;111270;111271 134961;134962;134963;134964;134965;134966;134967 134961 392;393 7 VVDLMAHMASK Oxidation (M) 1216.5944 0.59441423 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 1 0 By MS/MS By MS/MS 6.75 0.433 1 3 2 2 42.606 43.149 3 0.0022638 12782 20211116_3435_TMUAki_TMT10x_P_F7 70.728 56.822 3730600 5562300 95545 6638400 5202400 5678700 4210300 3631800 3625600 3409000 4881800 3474300 5194200 418920 6681900 4969200 5798300 4304400 3789200 3758500 3338600 4670400 3 3 2 3 3 3 3 3 3 3 3 1843800 2690200 72501 3350400 3537800 3993000 2462600 1830500 1938500 1788700 2422600 1717300 2512700 244160 3381000 3369500 3979600 2537900 1969000 2012200 1748700 2322000 1 1 1 1 1 1 1 1 1 1 1 1886800 2872100 23044 3288000 1664700 1685700 1747700 1801300 1687000 1620300 2459100 1756900 2681500 174760 3300900 1599600 1818700 1766500 1820100 1746300 1589900 2348300 2 2 1 2 2 2 2 2 2 2 2 417140000 253360000 163780000 21330 489 19606 111272;111273;111274;111275 134968;134969;134970;134971 134969 392;393 4 VVDLMAHMASKE 2 Oxidation (M) 1361.6319 0.63192195 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 2 1 By MS/MS By MS/MS 4.95 1.88 1 1 2 4 3 4 2 2 9 10 34.573 34.666 3 0.0007295 10325 20211116_3446_TMUAki_TMT10x_S_F7 78.324 71.887 43407000 76952000 536500 77797000 73739000 70509000 48442000 58165000 71228000 50856000 59720000 40417000 71808000 4106900 79197000 70077000 72002000 51165000 59543000 71057000 49970000 57966000 36 36 18 36 36 36 36 36 36 36 36 22478000 36229000 192980 35884000 45305000 48347000 26150000 27436000 33454000 24724000 28998000 20928000 33805000 2049100 36819000 42950000 48015000 27753000 28869000 33556000 24258000 28111000 15 15 8 15 15 15 15 15 15 15 15 20929000 40723000 343530 41913000 28434000 22162000 22292000 30730000 37775000 26132000 30722000 19489000 38003000 2057800 42379000 27127000 23988000 23413000 30674000 37501000 25712000 29854000 21 21 10 21 21 21 21 21 21 21 21 13015000000 9312700000 3701800000 21331 489 19607 111276;111277;111278;111279;111280;111281;111282;111283;111284;111285;111286;111287;111288;111289;111290;111291;111292;111293;111294 134972;134973;134974;134975;134976;134977;134978;134979;134980;134981;134982;134983;134984;134985;134986;134987;134988;134989;134990;134991;134992;134993;134994;134995;134996;134997;134998;134999;135000;135001;135002;135003;135004;135005;135006;135007;135008 135004 392;393 37 VVDLMAHMASKE Oxidation (M) 1345.637 0.63700733 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 1 1 By MS/MS By MS/MS 5.35 1.27 2 5 7 7 4 1 12 14 45.291 45.468 3 5.9022E-06 12244 20211116_3433_TMUAki_TMT10x_P_F5 103.46 91.614 141890000 213120000 1708400 240150000 215590000 184150000 154530000 112530000 99635000 112010000 164000000 132120000 198970000 13413000 242250000 205220000 189450000 158240000 118010000 106050000 109420000 156210000 28 28 16 28 28 28 28 28 28 28 28 77660000 113850000 701730 132950000 151500000 131790000 96373000 58728000 53335000 59338000 88824000 72308000 106310000 7345400 134270000 143870000 132690000 99305000 63416000 57402000 57927000 84587000 14 14 6 14 14 14 14 14 14 14 14 64231000 99272000 1006700 107200000 64092000 52364000 58158000 53798000 46300000 52676000 75173000 59812000 92661000 6068100 107980000 61354000 56759000 58936000 54592000 48646000 51492000 71623000 14 14 10 14 14 14 14 14 14 14 14 27303000000 16867000000 10436000000 21332 489 19607 111295;111296;111297;111298;111299;111300;111301;111302;111303;111304;111305;111306;111307;111308;111309;111310;111311;111312;111313;111314;111315;111316;111317;111318;111319;111320 135009;135010;135011;135012;135013;135014;135015;135016;135017;135018;135019;135020;135021;135022;135023;135024;135025;135026;135027;135028;135029;135030;135031;135032;135033;135034;135035 135013 392;393 27 VVDLMAHMASKE Unmodified 1329.6421 0.64209271 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 1 By MS/MS By MS/MS 6 1.88 1 1 1 2 4 4 4 9 8 62.266 62.416 2;3 2.8902E-11 19135 20211116_3436_TMUAki_TMT10x_P_F8 177.76 152.92 434010000 663660000 2670900 868100000 601500000 474620000 426050000 281620000 287790000 312310000 487350000 404100000 620030000 38187000 864460000 572330000 503420000 435930000 296160000 305910000 303710000 463950000 20 20 9 19 20 20 19 19 20 20 20 195660000 284320000 775810 374160000 393120000 327210000 237640000 128750000 136370000 139250000 215400000 182170000 265640000 18122000 373830000 372980000 331760000 244920000 140410000 145970000 135530000 205350000 11 11 4 10 11 11 10 10 11 11 11 238350000 379340000 1895100 493940000 208370000 147410000 188410000 152870000 151410000 173060000 271940000 221930000 354390000 20065000 490630000 199340000 171670000 191010000 155750000 159930000 168190000 258600000 9 9 5 9 9 9 9 9 9 9 9 40066000000 22271000000 17795000000 21333 489 19607 111321;111322;111323;111324;111325;111326;111327;111328;111329;111330;111331;111332;111333;111334;111335;111336;111337 135036;135037;135038;135039;135040;135041;135042;135043;135044;135045;135046;135047;135048;135049;135050;135051;135052;135053;135054;135055 135045 20 VVDPFSKK Unmodified 918.51747 0.51746776 1305 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 47.53 47.438 3 0.0056799 13038 20211116_3436_TMUAki_TMT10x_P_F8 73.721 34.703 4476300 7409800 68370 8307800 4404400 3960400 4643700 4532400 4535900 4350200 6248800 4168400 6917500 433830 8346900 4233300 4315600 4694500 4573900 4680000 4256100 5975000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4476300 7409800 68370 8307800 4404400 3960400 4643700 4532400 4535900 4350200 6248800 4168400 6917500 433830 8346900 4233300 4315600 4694500 4573900 4680000 4256100 5975000 1 1 1 1 1 1 1 1 1 1 1 311720000 0 311720000 21334 1305 19608 111338;111339;111340;111341 135056;135057;135058;135059 135057 4 VVDRDSEEAEIIR Unmodified 1529.7686 0.76855009 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 37.035 36.979 3 9.0314E-15 8917 20211116_3428_TMUAki_TMT10x_P_F1 170.26 139.03 2708900 4367100 46085 5288700 7239900 7118700 4071600 6091200 6719300 4660100 5425200 2522200 4078400 288180 5357600 6862300 7116100 4377600 6202100 6674000 4610200 5273500 4 4 3 4 4 4 4 4 4 4 4 1631400 2638000 18383 3426700 6183400 6160700 3099100 4171500 4608000 2987800 3508500 1518800 2464500 173330 3481000 5849700 6062800 3351600 4306200 4582800 2966800 3418600 2 2 1 2 2 2 2 2 2 2 2 1077500 1729100 27702 1862000 1056500 958000 972420 1919800 2111300 1672300 1916700 1003400 1613900 114850 1876600 1012600 1053300 1026000 1895900 2091200 1643500 1855000 2 2 2 2 2 2 2 2 2 2 2 661970000 461340000 200630000 21335 586 19609 111342;111343;111344;111345 135060;135061;135062;135063 135060 4 VVDRDSEEAEIIRK Unmodified 1657.8635 0.8635131 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 2 By MS/MS By MS/MS 3 1.41 1 1 1 1 1 3 2 38.033 37.969 4 2.2533E-30 12156 20211116_3441_TMUAki_TMT10x_S_F3 217.48 176.24 18004000 28067000 1596700 30197000 25436000 26101000 19926000 15584000 15454000 14350000 20798000 16775000 26197000 3084800 30594000 24348000 26606000 20362000 16339000 16107000 14065000 19898000 5 5 5 5 5 5 5 5 5 5 5 9774000 14160000 590630 15186000 17265000 15316000 7882500 7921900 9000500 7741700 11331000 9104900 13217000 1465700 15422000 16355000 15429000 8520800 8422200 9190300 7568400 10859000 3 3 3 3 3 3 3 3 3 3 3 8230100 13907000 1006000 15011000 8171200 10785000 12044000 7662200 6453800 6607800 9466700 7670500 12981000 1619100 15172000 7993200 11177000 11841000 7916400 6917200 6497000 9039000 2 2 2 2 2 2 2 2 2 2 2 888760000 603280000 285480000 21336 586 19610 111346;111347;111348;111349;111350 135064;135065;135066;135067;135068 135067 5 VVDSMEDEVQRR Oxidation (M) 1477.6831 0.6831059 3231 Q9Y285;Q9Y285-2 FARSA Phenylalanine--tRNA ligase alpha subunit yes no 0 0 1 1 By MS/MS By MS/MS 1 0 2 1 1 28.647 28.687 3 2.3189E-06 7344 20211116_3439_TMUAki_TMT10x_S_F1 115 95.166 137100 271220 3400.7 250820 303990 242970 184330 130430 159120 138460 213300 127680 253000 12927 257200 288680 245470 192450 138540 164900 134900 204080 3 3 2 3 3 3 3 3 3 3 3 92099 161870 3400.7 161830 243590 198950 128460 82895 117060 99316 139030 85778 151040 12927 165650 230880 197780 135970 90631 120370 96320 133440 2 2 2 2 2 2 2 2 2 2 2 45004 109350 0 88992 60396 44012 55868 47539 42058 39143 74264 41904 101960 0 91552 57796 47690 56478 47905 44534 38575 70642 1 1 0 1 1 1 1 1 1 1 1 15352000 11236000 4115300 21337 3231 19611 111351;111352 135069;135070;135071 135071 3220 3 VVEELTR Unmodified 844.46543 0.46543219 1847 Q16531;Q16531-2 DDB1 DNA damage-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 39.432 39.327 2 0.0061233 12949 20211116_3441_TMUAki_TMT10x_S_F3 105.04 62.946 3244700 5384600 17138 5384100 4771500 4600300 3856800 3234800 3529200 2937900 4497400 3021100 5024400 284800 5481000 4551800 4704100 3949800 3348900 3639100 2881500 4308500 4 4 1 4 4 4 4 4 4 4 4 1547200 2466500 0 2469600 2850500 3118900 1885700 1578500 1696300 1370300 2157300 1440500 2301500 134530 2528900 2708100 3102700 1957300 1676400 1750300 1346900 2066800 2 2 0 2 2 2 2 2 2 2 2 1697500 2918100 17138 2914500 1921100 1481300 1971100 1656300 1832900 1567600 2340100 1580600 2722900 150270 2952100 1843700 1601400 1992500 1672500 1888700 1534600 2241700 2 2 1 2 2 2 2 2 2 2 2 160050000 84396000 75652000 21338 1847 19612 111353;111354;111355;111356 135072;135073;135074;135075 135075 4 VVEEPYTVR Unmodified 1090.5659 0.56587452 312 O75153 CLUH Clustered mitochondria protein homolog yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 38.761 38.631 2 0.013203 10857 20211116_3430_TMUAki_TMT10x_P_F3 64.42 38.684 1270300 1990200 122030 2192400 1435600 1397400 1593100 1142400 1282400 1057700 1681900 1183700 1857800 221360 2210400 1387800 1466900 1598100 1171800 1332400 1036500 1610100 2 2 2 2 2 2 2 2 2 2 2 158940 239710 13371 256940 323040 286570 176500 137540 168600 115890 181100 148090 223730 27937 261350 306870 286770 186450 146710 172310 114080 174310 1 1 1 1 1 1 1 1 1 1 1 1111400 1750500 108660 1935500 1112500 1110800 1416700 1004900 1113800 941810 1500800 1035600 1634000 193420 1949100 1081000 1180100 1411700 1025100 1160000 922420 1435800 1 1 1 1 1 1 1 1 1 1 1 26916000 4956700 21960000 21339 312 19613 111357;111358 135076;135077 135076 2 VVEGSFVYK Unmodified 1026.5386 0.53859714 884 P31150 GDI1 Rab GDP dissociation inhibitor alpha yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 53.476 53.61 2 6.3944E-06 15294 20211116_3445_TMUAki_TMT10x_S_F6 175.44 144.37 12053000 20005000 45066 23631000 16640000 15878000 13969000 14368000 13020000 13370000 16849000 11222000 18680000 1073900 23736000 15889000 16620000 14280000 14655000 13423000 13099000 16135000 3 3 2 3 3 3 3 3 3 3 3 3815800 6165100 39773 6904400 8515300 8934700 4581000 5440100 4778900 4403100 5569400 3553200 5755400 419240 7021800 8068300 8898300 4858600 5676500 4881100 4343000 5348100 1 1 1 1 1 1 1 1 1 1 1 8236700 13840000 5293.2 16727000 8125200 6943700 9388500 8928200 8240700 8967100 11280000 7669000 12925000 654630 16714000 7820800 7721900 9421600 8978600 8541600 8756100 10787000 2 2 1 2 2 2 2 2 2 2 2 1236300000 498500000 737820000 21340 884 19614 111359;111360;111361;111362 135078;135079;135080;135081 135081 4 VVEGTPLIDGR Unmodified 1154.6295 0.62953741 1732 Q14739 LBR Lamin-B receptor yes yes 0 0 0 0 By MS/MS 3 0 1 1 47.798 47.774 2 0.001266 15095 20211116_3430_TMUAki_TMT10x_P_F3 83.278 60.448 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21341 1732 19615 111363 135082 135082 1 VVEHNIR Unmodified 865.477 0.47699993 74 O00232;O00232-2 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes no 0 0 0 0 By MS/MS 3 0 1 1 26.538 26.245 3 0.0052037 7596 20211116_3441_TMUAki_TMT10x_S_F3 94.407 74.93 59051 106300 2115.2 102460 65906 52779 71304 53520 48545 54928 63694 54998 99177 6963 104050 63458 56848 71340 54420 50920 53587 60974 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 59051 106300 2115.2 102460 65906 52779 71304 53520 48545 54928 63694 54998 99177 6963 104050 63458 56848 71340 54420 50920 53587 60974 1 1 1 1 1 1 1 1 1 1 1 1973800 0 1973800 21342 74 19616 111364 135083 135083 1 VVEIAPAAHLDPQLR Unmodified 1627.9046 0.90459006 628 P11498;P11498-2 PC Pyruvate carboxylase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 2 2 52.958 53.14 3 2.9241E-05 14827 20211116_3444_TMUAki_TMT10x_S_F5 95.57 80.426 6829200 10811000 166750 12209000 10889000 12176000 7980600 8466200 8735600 8221900 9915600 6359900 10093000 778440 12356000 10377000 12323000 8270500 8787800 8895800 8040000 9528700 3 3 3 3 3 3 3 3 3 3 3 4366300 7016800 115620 7998800 8436000 10220000 6154400 5445400 5755000 5546400 6453100 4066300 6551100 526750 8123900 8038400 10167000 6349600 5780400 5897000 5412700 6203500 2 2 2 2 2 2 2 2 2 2 2 2462800 3794600 51134 4210100 2452600 1956600 1826100 3020900 2980600 2675600 3462500 2293500 3542300 251700 4232000 2339000 2156200 1920800 3007400 2998800 2627300 3325200 1 1 1 1 1 1 1 1 1 1 1 863550000 625150000 238390000 21343 628 19617 111365;111366;111367;111368 135084;135085;135086;135087 135086 4 VVENLQDDFDFNYK Unmodified 1744.7944 0.79443049 986 P40763;P40763-2;P40763-3 STAT3 Signal transducer and activator of transcription 3 yes no 0 0 0 0 By MS/MS 4 0 1 1 76.392 76.415 3 0.089298 25214 20211116_3431_TMUAki_TMT10x_P_F4 34.485 17.606 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21344 986 19618 111369 135088 135088 1 VVESPDFSKDEDYLGK Unmodified 1826.8574 0.85742467 3359 Q9Y6Y8 SEC23IP SEC23-interacting protein yes yes 0 0 0 1 By MS/MS 4 0 1 1 59.599 59.729 3 5.1498E-05 18380 20211116_3431_TMUAki_TMT10x_P_F4 83.966 74.386 2934100 4779000 0 5936200 5795600 6912200 4424300 2870000 3934900 3275900 3886300 2731800 4463700 268880 5988800 5521700 6890700 4544300 3134200 4022800 3182700 3750400 1 1 0 1 1 1 1 1 1 1 1 2934100 4779000 0 5936200 5795600 6912200 4424300 2870000 3934900 3275900 3886300 2731800 4463700 268880 5988800 5521700 6890700 4544300 3134200 4022800 3182700 3750400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 671370000 671370000 0 21345 3359 19619 111370 135089 135089 1 VVEVGSK Unmodified 716.40685 0.40685468 670;671 P14618;P14618-3;P14618-2 PKM Pyruvate kinase PKM no no 0 0 0 0 By MS/MS By MS/MS 4.5 2.06 1 1 1 2 2 1 1 1 5 5 34.578 34.664 2 0.0046945 9073 20211116_3431_TMUAki_TMT10x_P_F4 112.17 39.132 10582000 16996000 193030 15408000 11509000 12998000 11544000 7815000 8733500 8472900 11963000 9853900 15853000 1070200 15795000 11048000 13274000 11620000 8227000 9122400 8248000 11440000 7 7 7 7 7 7 7 7 7 7 7 5763900 9107900 82539 7974900 6464200 8628500 6177300 3750200 4352700 4270700 6067000 5367400 8494400 564600 8225500 6195900 8640200 6224400 4074700 4568800 4149500 5799600 3 3 3 3 3 3 3 3 3 3 3 4817600 7887600 110490 7432800 5045100 4369900 5366300 4064800 4380800 4202200 5895800 4486500 7358300 505570 7569000 4852200 4633800 5396000 4152300 4553600 4098400 5640600 4 4 4 4 4 4 4 4 4 4 4 469930000 195920000 274010000 21346 670;671 19620 111371;111372;111373;111374;111375;111376;111377;111378;111379;111380 135090;135091;135092;135093;135094;135095;135096;135097 135090 8 VVEVLAGHGHLYSR Unmodified 1535.8209 0.82086043 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 4.83 2.91 1 1 1 1 2 2 4 41.457 41.517 4 2.9137E-09 11837 20211116_3435_TMUAki_TMT10x_P_F7 127.3 104.82 6809400 11202000 54873 12550000 10198000 10626000 7421400 8992900 8798600 8486100 10026000 6340600 10458000 586620 12679000 9711200 10907000 7715700 9210600 8934300 8308900 9633700 9 9 5 9 9 9 9 9 9 9 9 2769100 4458000 14082 5703800 6076700 6759000 3618300 3494100 3382400 3304400 4013300 2578300 4164400 214050 5746600 5765400 6747200 3791400 3711700 3473700 3235100 3852000 4 4 2 4 4 4 4 4 4 4 4 4040300 6744100 40791 6845900 4121000 3866500 3803100 5498800 5416200 5181700 6012700 3762300 6293300 372570 6932200 3945800 4159400 3924200 5499000 5460600 5073800 5781700 5 5 3 5 5 5 5 5 5 5 5 2824800000 1969700000 855050000 21347 1092 19621 111381;111382;111383;111384;111385;111386 135098;135099;135100;135101;135102;135103;135104;135105;135106 135098 9 VVFELFSDVCPK Unmodified 1438.7166 0.71663786 1631 Q13427;Q13427-2 PPIG Peptidyl-prolyl cis-trans isomerase G yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 54.384 54.468 2;3 2.5831E-06 28205 20211116_3446_TMUAki_TMT10x_S_F7 119.34 103.33 2615100 4371200 1935.4 4220000 4561700 2621400 3434900 2052000 1789300 2416300 3025400 2434400 4078200 187890 4291900 4342000 2756300 3492100 2126000 1936200 2344900 2880300 2 2 1 2 2 2 2 2 2 2 2 82855 117070 1935.4 135530 88903 119910 87233 63036 57630 80343 93379 77161 109310 8757.7 136720 85319 121840 87655 67479 61193 77755 88973 1 1 1 1 1 1 1 1 1 1 1 2532200 4254100 0 4084500 4472800 2501500 3347600 1989000 1731700 2336000 2932000 2357300 3968900 179130 4155200 4256700 2634500 3404400 2058500 1875000 2267100 2791300 1 1 0 1 1 1 1 1 1 1 1 523190000 5858000 517330000 21348 1631 19622 111387;111388;111389 135107;135108;135109 135108 3 VVFEQTK Unmodified 849.45962 0.45961853 1271 P60174;P60174-1;P60174-4 TPI1 Triosephosphate isomerase yes no 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 43.017 43.158 2 0.0013506 11672 20211116_3431_TMUAki_TMT10x_P_F4 138.55 64.912 17248000 29170000 272120 28576000 28739000 24207000 21593000 17512000 18858000 16058000 24174000 16062000 27217000 1825000 29129000 27392000 24780000 22191000 18100000 19493000 15743000 23155000 5 5 4 5 5 5 5 5 5 5 5 8770800 14158000 171460 14216000 17026000 17637000 11549000 8601000 9485600 8028300 12123000 8167800 13211000 1002600 14549000 16198000 17553000 11937000 9183800 9833800 7864500 11613000 2 2 2 2 2 2 2 2 2 2 2 8477600 15012000 100660 14360000 11713000 6570200 10044000 8911200 9372200 8029500 12051000 7894100 14005000 822440 14579000 11194000 7226400 10254000 8915800 9659000 7878400 11542000 3 3 2 3 3 3 3 3 3 3 3 907460000 492640000 414820000 21349 1271 19623 111390;111391;111392;111393;111394;111395 135110;135111;135112;135113;135114;135115 135110 6 VVFQEFR Unmodified 923.4865 0.48650199 934 P35579;P35579-2 MYH9 Myosin-9 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 52.894 52.993 2 0.030973 14662 20211116_3434_TMUAki_TMT10x_P_F6 79.451 57.749 10808000 16419000 153140 17876000 20376000 27055000 13797000 15387000 14903000 12944000 15294000 10064000 15326000 1095700 18271000 19376000 26733000 14373000 16160000 15127000 12742000 14741000 3 3 2 3 3 3 3 3 3 3 3 10808000 16419000 153140 17876000 20376000 27055000 13797000 15387000 14903000 12944000 15294000 10064000 15326000 1095700 18271000 19376000 26733000 14373000 16160000 15127000 12742000 14741000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 489340000 489340000 0 21350 934 19624 111396;111397 135116;135117;135118;135119 135116 4 VVFRDPYR Unmodified 1050.5611 0.56106391 1384 P62917 RPL8 60S ribosomal protein L8 yes yes 0 0 0 1 By MS/MS By MS/MS 5 2.89 3 1 1 2 1 4 7 5 38.259 38.447 2;3 0.00022109 9436 20211116_3428_TMUAki_TMT10x_P_F1 143.28 102.71 5021700 8442200 47209 9384700 11142000 9193500 5604000 7776100 7390300 5885800 7905500 4676000 7881000 535010 9504500 10546000 9345700 6029200 7921100 7458500 5826300 7610200 10 10 7 10 10 10 10 10 10 10 10 2565400 4174300 18455 4720000 8599200 7382100 3715600 3932200 3789100 2984100 3949700 2388700 3897100 303360 4816400 8123000 7278700 4026500 4143700 3857300 2953500 3805100 6 6 3 6 6 6 6 6 6 6 6 2456300 4267800 28754 4664800 2542700 1811400 1888300 3843900 3601200 2901700 3955800 2287300 3983800 231650 4688100 2423400 2067000 2002700 3777500 3601200 2872800 3805000 4 4 4 4 4 4 4 4 4 4 4 3280000000 2043400000 1236600000 21351 1384 19625 111398;111399;111400;111401;111402;111403;111404;111405;111406;111407;111408;111409 135120;135121;135122;135123;135124;135125;135126;135127;135128;135129;135130 135120 11 VVFVFGPDK Unmodified 1006.5488 0.54876789 859 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 2 1 69.739 69.696 2 3.3383E-05 22113 20211116_3428_TMUAki_TMT10x_P_F1 121.96 83.663 9564500 14838000 189840 16647000 11298000 12868000 9586000 9665100 8484700 9095300 11036000 8906900 13852000 994170 16798000 10802000 13270000 9778900 9971400 8770500 8906400 10567000 2 2 2 2 2 2 2 2 2 2 2 4902500 7588600 128370 8396900 6147900 9289000 5346900 5081400 4523600 5050400 5754000 4565600 7084000 543520 8522500 5882600 9313400 5440000 5377800 4681700 4933800 5512600 1 1 1 1 1 1 1 1 1 1 1 4662100 7249400 61469 8249700 5150200 3579300 4239000 4583800 3961100 4044800 5282000 4341300 6768200 450640 8275600 4919100 3957000 4338900 4593600 4088800 3972600 5054500 1 1 1 1 1 1 1 1 1 1 1 837670000 490340000 347330000 21352 859 19626 111410;111411;111412 135131;135132;135133 135131 3 VVFVFGPDKK Unmodified 1134.6437 0.64373091 859 P30041 PRDX6 Peroxiredoxin-6 yes yes 0 0 0 1 By MS/MS By MS/MS 4 2.94 1 1 1 2 1 59.541 59.453 3 1.0856E-07 17887 20211116_3428_TMUAki_TMT10x_P_F1 116.77 99.74 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21353 859 19627 111413;111414;111415 135134;135135;135136 135134 3 VVGAMQLYSVDR Oxidation (M) 1352.6758 0.67583567 1471 Q00610;Q00610-2;P53675;P53675-2 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 1 0 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 47.787 47.928 2 9.6479E-07 12578 20211116_3434_TMUAki_TMT10x_P_F6 123.35 95.613 3134700 5503900 22342 5692700 5447400 7401900 4077000 5799500 5985700 4781100 5180000 2918800 5136500 303680 5819700 5189500 7399200 4266300 5946900 5977300 4711500 5021900 3 3 2 3 3 3 3 3 3 3 3 2094300 3648400 14733 3819800 4539600 6430800 3317300 3705000 3958500 2972100 3422900 1950000 3405000 212180 3923800 4322400 6328900 3448600 3882700 3980000 2932900 3318500 2 2 1 2 2 2 2 2 2 2 2 1040500 1855500 7609.5 1872900 907790 971160 759760 2094500 2027200 1809000 1757100 968830 1731500 91495 1895900 867170 1070200 817630 2064300 1997300 1778500 1703400 1 1 1 1 1 1 1 1 1 1 1 574280000 363370000 210910000 21354 1471 19628 111416;111417;111418 135137;135138;135139 135137 1986 3 VVGAMQLYSVDR Unmodified 1336.6809 0.68092105 1471 Q00610;Q00610-2;P53675;P53675-2 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 57.814 58.064 2 0.076627 19133 20211116_3446_TMUAki_TMT10x_S_F7 45.908 30.246 6032500 10417000 0 11087000 5531100 6124700 5014300 15281000 10651000 9029900 9664200 5615900 9722400 377250 11189000 5283000 6751200 5287800 14888000 10554000 9076600 9353300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6032500 10417000 0 11087000 5531100 6124700 5014300 15281000 10651000 9029900 9664200 5615900 9722400 377250 11189000 5283000 6751200 5287800 14888000 10554000 9076600 9353300 1 1 0 1 1 1 1 1 1 1 1 683340000 0 683340000 21355 1471 19628 111419;111420;111421 135140;135141 135141 2 VVGAMQLYSVDRK Oxidation (M) 1480.7708 0.77079869 1471 Q00610;Q00610-2;P53675;P53675-2 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 1 1 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 44.342 44.426 3 3.8648E-09 11765 20211116_3436_TMUAki_TMT10x_P_F8 122.39 100.16 12329000 19781000 110080 22586000 27216000 29165000 16207000 23535000 24363000 18650000 19655000 11480000 18468000 1301500 22942000 25824000 29179000 17268000 24066000 24261000 18416000 19107000 8 8 4 8 8 8 8 8 8 8 8 8978200 14358000 90829 16712000 23871000 25953000 13222000 17416000 17432000 13857000 14184000 8360100 13407000 1019900 17021000 22626000 25678000 14099000 18031000 17434000 13680000 13783000 5 5 2 5 5 5 5 5 5 5 5 3350700 5422200 19247 5874200 3344800 3211700 2984700 6119100 6931100 4793300 5471900 3119900 5061200 281660 5921000 3198300 3501500 3168500 6035000 6826800 4736000 5323800 3 3 2 3 3 3 3 3 3 3 3 1442800000 986140000 456650000 21356 1471 19629 111422;111423;111424;111425;111426;111427 135142;135143;135144;135145;135146;135147;135148;135149;135150 135145 1986 9 VVGAMQLYSVDRK Unmodified 1464.7759 0.77588407 1471 Q00610;Q00610-2;P53675;P53675-2 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 1 By MS/MS By MS/MS 3.25 2.77 1 2 1 3 1 52.26 52.119 3 2.4838E-08 15078 20211116_3436_TMUAki_TMT10x_P_F8 107.65 86.808 53725000 85989000 903190 89443000 74809000 89096000 58698000 44805000 47321000 52453000 63908000 50030000 80249000 5591200 90997000 71380000 89791000 60031000 48019000 49227000 50913000 61136000 3 3 3 3 3 3 3 3 3 3 3 42810000 68701000 713960 69961000 64622000 80794000 49726000 35147000 37988000 42359000 51452000 39866000 64110000 4520100 71445000 61631000 80614000 50855000 38254000 39638000 41073000 49217000 2 2 2 2 2 2 2 2 2 2 2 10915000 17287000 189230 19481000 10187000 8301100 8972700 9658700 9332700 10094000 12455000 10165000 16139000 1071100 19552000 9749000 9176700 9176000 9764800 9589500 9840800 11919000 1 1 1 1 1 1 1 1 1 1 1 2285500000 1608700000 676850000 21357 1471 19629 111428;111429;111430;111431 135151;135152;135153 135152 3 VVGAQSLK Unmodified 800.4756 0.47560295 1170 P52209;P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 By MS/MS By MS/MS 7 0.632 1 3 1 1 4 37.452 37.834 2 0.013892 11128 20211116_3435_TMUAki_TMT10x_P_F7 78.516 22.986 3947200 6643300 62690 6210200 7874100 7644700 5208100 4541200 6660500 4109500 5696900 3675700 6197200 440670 6387400 7486800 7629700 5467100 4760900 6678200 4031300 5525400 4 4 4 4 4 4 4 4 4 4 4 2622100 4208500 2009.9 4008600 6224400 6299700 3532700 3029000 4582300 2675200 3637800 2441500 3926200 269720 4137800 5900700 6202900 3756600 3234200 4582300 2627300 3538500 1 1 1 1 1 1 1 1 1 1 1 1325100 2434700 60680 2201600 1649700 1345100 1675400 1512200 2078200 1434300 2059000 1234200 2271000 170960 2249600 1586100 1426900 1710500 1526700 2095900 1404000 1986900 3 3 3 3 3 3 3 3 3 3 3 86674000 44466000 42208000 21358 1170 19630 111432;111433;111434;111435;111436 135154;135155;135156;135157;135158 135154 5 VVGAVIDQGLITR Unmodified 1339.7823 0.78234966 60 E9PRG8 C11orf98 Uncharacterized protein C11orf98 yes yes 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 62.738 63.121 2 1.3227E-05 20652 20211116_3435_TMUAki_TMT10x_P_F7 102.05 76.611 47392000 70952000 0 76083000 53478000 62762000 52407000 36936000 35099000 41413000 55013000 44122000 66225000 3390100 77056000 51209000 64179000 52679000 38991000 37171000 40262000 52453000 4 4 0 4 4 4 4 4 4 4 4 27988000 42140000 0 44825000 32649000 45557000 33514000 21895000 21685000 25858000 31797000 26055000 39331000 1833500 45550000 31291000 45833000 33583000 23574000 22937000 25091000 30361000 2 2 0 2 2 2 2 2 2 2 2 19405000 28813000 0 31258000 20828000 17205000 18893000 15041000 13414000 15555000 23216000 18067000 26895000 1556600 31506000 19918000 18345000 19096000 15417000 14234000 15171000 22092000 2 2 0 2 2 2 2 2 2 2 2 1639600000 801240000 838340000 21359 60 19631 111437;111438;111439 135159;135160;135161;135162 135160 4 VVGCSCVVVK Unmodified 1105.5624 0.56238582 801 P25398 RPS12 40S ribosomal protein S12 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 44.218 44.507 2 7.4544E-10 13205 20211116_3435_TMUAki_TMT10x_P_F7 193.41 141.42 7117500 10729000 0 13203000 7920000 6212600 5868300 3340400 3979500 3511900 6729800 6626600 10021000 544190 13190000 7538800 6695700 6001300 3546400 4228700 3422900 6406800 4 4 0 4 4 4 4 4 4 4 4 4145800 6038700 0 7411600 6144600 5009400 3630900 1889800 2364500 2034400 3712200 3860100 5639900 362150 7428200 5827900 5181300 3775200 2083200 2508700 1981000 3539300 2 2 0 2 2 2 2 2 2 2 2 2971700 4690700 0 5791400 1775400 1203200 2237400 1450600 1615100 1477500 3017500 2766500 4381000 182040 5761800 1710800 1514300 2226100 1463200 1720100 1441900 2867500 2 2 0 2 2 2 2 2 2 2 2 678510000 431810000 246700000 21360 801 19632 111440;111441;111442;111443 135163;135164;135165;135166 135163 4 VVGDRENGSDNLPSSAGSGDKPLSDPAPF Unmodified 2884.3475 0.34750849 214 O43399;O43399-2;O43399-4;O43399-3;O43399-5;O43399-7;O43399-6 TPD52L2 Tumor protein D54 yes no 0 0 0 2 By matching By MS/MS 3 0 2 1 1 57.667 57.35 3 9.8887E-25 20114 20211116_3441_TMUAki_TMT10x_S_F3 145.2 136.6 687750 1165100 11382 1304600 600600 590930 480610 866490 867410 849000 906830 640450 1087700 66407 1310300 573560 652210 505750 866560 866910 829900 873570 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 687750 1165100 11382 1304600 600600 590930 480610 866490 867410 849000 906830 640450 1087700 66407 1310300 573560 652210 505750 866560 866910 829900 873570 1 1 1 1 1 1 1 1 1 1 1 462500000 224830000 237670000 21361 214 19633 111444;111445 135167 135167 1 VVGDVAYDEAK Unmodified 1164.5663 0.56626845 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS 3 0 1 1 46.847 46.845 2 8.5169E-16 14707 20211116_3430_TMUAki_TMT10x_P_F3 182.71 133.29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21362 629 19634 111446 135168 135168 1 VVGFHVLGPNAGEVTQGFAAALK Unmodified 2281.2219 0.22190145 1871 Q16881;Q16881-3;Q16881-4;Q16881-5;Q16881-2;Q16881-6;Q16881-7 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 2.77 0.89 1 4 5 3 7 6 76.692 76.621 3;4 3.5765E-37 25053 20211116_3440_TMUAki_TMT10x_S_F2 196.62 182.01 136020000 227940000 724430 211720000 202130000 230430000 206570000 168290000 154640000 178920000 193790000 126640000 212630000 10336000 217420000 193900000 232190000 207690000 174560000 160980000 174300000 185730000 14 14 8 14 14 14 14 14 14 14 14 66879000 101790000 294960 95316000 72420000 134430000 86151000 76321000 70797000 83614000 86255000 62269000 94956000 3764000 98280000 69767000 133230000 86193000 80749000 73244000 81361000 82729000 7 7 4 7 7 7 7 7 7 7 7 69137000 126150000 429470 116410000 129710000 95996000 120410000 91973000 83839000 95303000 107530000 64373000 117680000 6571700 119140000 124130000 98963000 121500000 93814000 87733000 92941000 103000000 7 7 4 7 7 7 7 7 7 7 7 51812000000 25143000000 26669000000 21363 1871 19635 111447;111448;111449;111450;111451;111452;111453;111454;111455;111456;111457;111458;111459 135169;135170;135171;135172;135173;135174;135175;135176;135177;135178;135179;135180;135181;135182;135183;135184 135177 16 VVGGFDR Unmodified 748.38679 0.38678794 1042 P46087;P46087-2;P46087-4;P46087-3 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 0 0 0 0 By MS/MS 4 0 1 1 36.4 36.428 2 0.03661 8938 20211116_3431_TMUAki_TMT10x_P_F4 71.359 49.813 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21364 1042 19636 111460 135185 135185 1 VVGIIKR Unmodified 783.53306 0.53305825 3241 Q9Y2L1;Q9Y2L1-2 DIS3 Exosome complex exonuclease RRP44 yes no 0 0 0 1 By MS/MS 4 0 1 1 38.132 38.173 3 0.0071639 9643 20211116_3431_TMUAki_TMT10x_P_F4 84.064 45.826 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21365 3241 19637 111461 135186 135186 1 VVGLVVGPK Unmodified 866.55894 0.55893865 7 A1L020;Q6ZN04;Q5U5Q3 MEX3A;MEX3B;MEX3C RNA-binding protein MEX3A;RNA-binding protein MEX3B;RNA-binding E3 ubiquitin-protein ligase MEX3C no no 0 0 0 0 By MS/MS 2 0 1 1 56.807 56.556 2 0.0001914 18236 20211116_3429_TMUAki_TMT10x_P_F2 135.35 124.48 4982300 7842300 0 6671000 6559900 10400000 6478800 7192700 6790400 6139700 6353000 4638500 7313300 361990 6944100 6283200 10293000 6585600 7443400 6878900 6039800 6142000 1 1 0 1 1 1 1 1 1 1 1 4982300 7842300 0 6671000 6559900 10400000 6478800 7192700 6790400 6139700 6353000 4638500 7313300 361990 6944100 6283200 10293000 6585600 7443400 6878900 6039800 6142000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 375140000 375140000 0 21366 7 19638 111462 135187 135187 1 VVGNPCPICR Unmodified 1170.5638 0.5637828 3338 Q9Y676 MRPS18B 28S ribosomal protein S18b, mitochondrial yes yes 0 0 0 0 By MS/MS 8 0 2 2 34.273 34.568 2 0.0019599 7843 20211116_3436_TMUAki_TMT10x_P_F8 81.191 66.673 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21367 3338 19639 111463;111464 135188;135189 135188 2 VVGQTTPESFEK Unmodified 1320.6561 0.65614609 1501 Q02952;Q02952-3;Q02952-2 AKAP12 A-kinase anchor protein 12 yes no 0 0 0 0 By MS/MS 4 0 1 1 47.009 47.145 2 0.059093 13230 20211116_3431_TMUAki_TMT10x_P_F4 57.225 33.195 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21368 1501 19640 111465 135190 135190 1 VVGWSGPVPRPR Unmodified 1305.7306 0.73058886 1160 P51610;P51610-2;P51610-4;P51610-3 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 0 1 By MS/MS By matching 5 0 2 1 1 43.307 43.425 3 3.8589E-07 12027 20211116_3433_TMUAki_TMT10x_P_F5 121.68 101.89 1183700 1817000 10164 2121700 3340200 2810300 1845300 1153500 1341100 1246000 1713400 1102300 1696600 137820 2153200 3165800 2783200 1934300 1259200 1399600 1213100 1641300 1 1 1 1 1 1 1 1 1 1 1 1183700 1817000 10164 2121700 3340200 2810300 1845300 1153500 1341100 1246000 1713400 1102300 1696600 137820 2153200 3165800 2783200 1934300 1259200 1399600 1213100 1641300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 327550000 276800000 50745000 21369 1160 19641 111466;111467 135191 135191 1 VVHFLGR Unmodified 826.48136 0.48135703 1060 P46976;P46976-2 GYG1 Glycogenin-1 yes no 0 0 0 0 By MS/MS 2 0.816 1 1 1 3 39.073 38.973 3 0.0046301 9647 20211116_3440_TMUAki_TMT10x_S_F2 96.048 61.875 75171 110150 1725.9 134580 74853 55111 94641 97793 92017 117900 107580 70005 102870 7836.2 134380 72374 62004 94883 97877 94279 114310 103300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 75171 110150 1725.9 134580 74853 55111 94641 97793 92017 117900 107580 70005 102870 7836.2 134380 72374 62004 94883 97877 94279 114310 103300 1 1 1 1 1 1 1 1 1 1 1 56447000 0 56447000 21370 1060 19642 111468;111469;111470 135192 135192 1 VVHIIQAR Unmodified 934.57123 0.57123467 802 P25440;P25440-4;P25440-3;P25440-2 BRD2 Bromodomain-containing protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 33.278 33.278 3 0.0032354 7309 20211116_3428_TMUAki_TMT10x_P_F1 85.813 72.094 384220 565210 0 670560 563440 550940 419120 209840 215960 245450 401100 357730 527800 32110 674850 536470 560970 426380 231640 235160 238250 381200 1 1 0 1 1 1 1 1 1 1 1 384220 565210 0 670560 563440 550940 419120 209840 215960 245450 401100 357730 527800 32110 674850 536470 560970 426380 231640 235160 238250 381200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17639000 17639000 0 21371 802 19643 111471;111472 135193;135194 135193 2 VVHIIQSR Unmodified 950.56615 0.56614929 1766;299 Q15059;Q58F21;Q58F21-5;Q58F21-4;Q58F21-3;Q58F21-2;O60885;O60885-2;O60885-3 BRD3;BRDT;BRD4 Bromodomain-containing protein 3;Bromodomain testis-specific protein;Bromodomain-containing protein 4 no no 0 0 0 0 By MS/MS By MS/MS 1 0 4 2 2 32.623 32.638 2;3 0.00028972 8974 20211116_3439_TMUAki_TMT10x_S_F1 134.15 115.61 721190 1129800 610.82 1217700 819610 762690 741780 663120 708370 665400 904230 671480 1054500 58658 1229200 783760 802800 755460 679310 729060 649770 866210 3 3 2 3 3 3 3 3 3 3 3 183740 280780 184.26 282280 296660 306680 218870 159430 162870 184790 210020 171080 262000 16986 288230 282510 307610 224350 170290 169810 179430 201140 1 1 1 1 1 1 1 1 1 1 1 537450 849000 426.56 935410 522950 456010 522910 503690 545510 480620 694210 500400 792530 41672 941000 501250 495200 531110 509020 559250 470350 665070 2 2 1 2 2 2 2 2 2 2 2 99898000 58781000 41117000 21372 1766;299 19644 111473;111474;111475;111476 135195;135196;135197 135196 3 VVHIMDFQR Oxidation (M) 1159.5808 0.58081308 1026 P43243;P43243-2 MATR3 Matrin-3 yes no 0 0 1 0 By MS/MS By matching 6 0.707 1 2 1 3 1 37.127 37.271 3 0.00027507 9806 20211116_3433_TMUAki_TMT10x_P_F5 113.18 96.338 929100 1563600 0 1661500 2620700 2377900 1389900 1425200 1413800 1141100 1481400 865060 1459400 97428 1698800 2481700 2356800 1475000 1488600 1439700 1126200 1426900 3 3 0 3 3 3 3 3 3 3 3 929100 1563600 0 1661500 2620700 2377900 1389900 1425200 1413800 1141100 1481400 865060 1459400 97428 1698800 2481700 2356800 1475000 1488600 1439700 1126200 1426900 3 3 0 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 248220000 247340000 882120 21373 1026 19645 111477;111478;111479;111480 135198;135199;135200 135198 1327 3 VVHIMDFQR Unmodified 1143.5859 0.58589846 1026 P43243;P43243-2 MATR3 Matrin-3 yes no 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 46.02 46.355 3 1.1321E-05 13887 20211116_3435_TMUAki_TMT10x_P_F7 128.36 98.888 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21374 1026 19645 111481;111482 135201;135202 135201 2 VVHLGVGTPGR Unmodified 1090.6247 0.6247268 2626 Q9BQ75;Q9BQ75-2 CMSS1 Protein CMSS1 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 34.93 34.93 3 1.1296E-07 9891 20211116_3439_TMUAki_TMT10x_S_F1 114.89 96.835 270450 416890 9496.2 458090 557160 528330 326770 247920 293780 277330 373580 251890 389160 35288 465470 529010 527600 342480 267100 303150 269640 357910 1 1 1 1 1 1 1 1 1 1 1 270450 416890 9496.2 458090 557160 528330 326770 247920 293780 277330 373580 251890 389160 35288 465470 529010 527600 342480 267100 303150 269640 357910 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 108910000 108910000 0 21375 2626 19646 111483;111484 135203;135204 135204 2 VVHSYEELEENYTR Unmodified 1766.8111 0.81114318 628 P11498;P11498-2 PC Pyruvate carboxylase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 47.065 47.011 3 9.0089E-20 14802 20211116_3430_TMUAki_TMT10x_P_F3 150.22 141.62 637220 1095000 0 1208900 614690 512270 557420 1035600 971810 788450 972370 593190 1022100 37660 1214800 586990 576600 581240 1019100 970540 780220 938000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 637220 1095000 0 1208900 614690 512270 557420 1035600 971810 788450 972370 593190 1022100 37660 1214800 586990 576600 581240 1019100 970540 780220 938000 1 1 0 1 1 1 1 1 1 1 1 72648000 0 72648000 21376 628 19647 111485;111486 135205;135206 135205 2 VVIARPTPPQAR Unmodified 1303.7725 0.77245367 1047 P46379;P46379-2;P46379-3;P46379-4;P46379-5 BAG6 Large proline-rich protein BAG6 yes no 0 0 0 1 By MS/MS By MS/MS 2.5 1.12 1 1 1 1 3 1 33.594 33.485 3 3.7048E-12 10368 20211116_3441_TMUAki_TMT10x_S_F3 172.51 146.47 1868400 2785800 6953.6 2931400 3189800 2832700 1902400 1583100 1723300 1511100 2288900 1739600 2600000 163380 2978800 3025500 2863800 1991400 1670500 1781100 1478800 2190500 3 3 2 3 3 3 3 3 3 3 3 1469800 2178100 42.839 2261800 2832900 2462300 1507900 1244600 1360800 1184700 1805100 1368400 2032700 124480 2304500 2681900 2468700 1594200 1325100 1406600 1159500 1727600 2 2 1 2 2 2 2 2 2 2 2 398620 607770 6910.8 669610 356900 370370 394510 338500 362540 326420 483810 371210 567340 38905 674270 343570 395050 397210 345410 374530 319300 462960 1 1 1 1 1 1 1 1 1 1 1 149030000 110370000 38656000 21377 1047 19648 111487;111488;111489;111490 135207;135208;135209 135209 3 VVIDAFR Unmodified 818.46504 0.46503826 95 O00487 PSMD14 26S proteasome non-ATPase regulatory subunit 14 yes yes 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 53.457 53.766 2 0.0025686 15246 20211116_3445_TMUAki_TMT10x_S_F6 124.37 70.664 2721100 4381500 0 5136600 2701800 2350200 2441000 3386400 3492500 3293200 3960600 2533500 4091200 208390 5145200 2583000 2589400 2522200 3388000 3523700 3220100 3806200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2721100 4381500 0 5136600 2701800 2350200 2441000 3386400 3492500 3293200 3960600 2533500 4091200 208390 5145200 2583000 2589400 2522200 3388000 3523700 3220100 3806200 1 1 0 1 1 1 1 1 1 1 1 1471900000 0 1471900000 21378 95 19649 111491;111492 135210 135210 1 VVIEDEQLVLGASQEPVGR Unmodified 2037.0742 0.074234161 1979 Q6IBS0 TWF2 Twinfilin-2 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 70.44 70.365 3 2.6512E-12 22328 20211116_3428_TMUAki_TMT10x_P_F1 126.25 111.09 2127500 4033400 51730 3628300 2602000 3700400 2848500 2889500 2515000 2401500 3052600 1981300 3762100 231240 3731200 2504300 3747000 2866200 2964200 2592300 2365600 2928100 2 2 2 2 2 2 2 2 2 2 2 921300 1695200 26678 1509700 1128500 2131200 1303800 1296800 1232600 1069100 1309000 858020 1581100 104150 1562500 1088100 2114000 1311100 1353700 1259800 1053500 1260400 1 1 1 1 1 1 1 1 1 1 1 1206200 2338300 25052 2118700 1473600 1569200 1544700 1592800 1282400 1332500 1743700 1123300 2181000 127100 2168700 1416200 1633000 1555000 1610400 1332500 1312100 1667800 1 1 1 1 1 1 1 1 1 1 1 1098900000 756600000 342300000 21379 1979 19650 111493;111494 135211;135212 135211 2 VVIGMDVAASEFFR Oxidation (M) 1555.7705 0.77046434 520 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 1 0 By MS/MS By MS/MS 4.74 1.57 2 4 4 5 4 4 12 11 72.766 72.753 2;3 4.9982E-14 22718 20211116_3444_TMUAki_TMT10x_S_F5 147.33 126.95 112700000 190070000 863870 157690000 123240000 205890000 133840000 152620000 170920000 162750000 154370000 104940000 177240000 9119500 163880000 118410000 205580000 136360000 158160000 171670000 158530000 149420000 30 30 15 30 30 30 30 30 30 30 30 68955000 112720000 702160 97726000 69315000 147390000 75574000 88540000 100800000 97996000 92008000 64205000 105120000 5726500 101500000 66626000 145760000 77112000 93274000 101130000 95318000 89029000 16 16 10 16 16 16 16 16 16 16 16 43749000 77356000 161710 59967000 53920000 58506000 58269000 64076000 70118000 64754000 62359000 40731000 72117000 3393000 62383000 51786000 59817000 59244000 64887000 70539000 63214000 60396000 14 14 5 14 14 14 14 14 14 14 14 65065000000 31119000000 33945000000 21380 520 19651 111495;111496;111497;111498;111499;111500;111501;111502;111503;111504;111505;111506;111507;111508;111509;111510;111511;111512;111513;111514;111515;111516;111517 135213;135214;135215;135216;135217;135218;135219;135220;135221;135222;135223;135224;135225;135226;135227;135228;135229;135230;135231;135232;135233;135234;135235;135236;135237;135238;135239;135240;135241;135242;135243;135244;135245 135238 429 33 VVIGMDVAASEFFR Unmodified 1539.7755 0.77554972 520 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 0 By MS/MS By MS/MS 5.5 1.5 1 1 1 1 79.383 79.423 2 9.5025E-14 26461 20211116_3431_TMUAki_TMT10x_P_F4 136.5 123.46 3061200 5053500 0 4381200 3800700 2962100 4357500 2004300 2178600 2720700 3606500 2850000 4712900 236010 4495800 3656500 3083600 4323400 2107600 2362300 2627700 3434800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3061200 5053500 0 4381200 3800700 2962100 4357500 2004300 2178600 2720700 3606500 2850000 4712900 236010 4495800 3656500 3083600 4323400 2107600 2362300 2627700 3434800 1 1 0 1 1 1 1 1 1 1 1 771590000 0 771590000 21381 520 19651 111518;111519 135246;135247 135246 2 VVIGMDVAASEFYR Oxidation (M) 1571.7654 0.76537896 661 P13929;P13929-3;P13929-2 ENO3 Beta-enolase yes no 0 0 1 0 By MS/MS 5 0 1 1 62.534 62.614 2 5.5773E-06 18695 20211116_3444_TMUAki_TMT10x_S_F5 93.448 78.782 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21382 661 19652 111520 135248 135248 723 1 VVIIGAGKPAAVVLQTK Unmodified 1663.0396 0.039626976 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 1 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 63.512 63.539 3 3.0565E-29 20398 20211116_3442_TMUAki_TMT10x_S_F4 185.61 177.89 145360000 229220000 3167600 247510000 184860000 196780000 162200000 168340000 168890000 168420000 189180000 135360000 213950000 15326000 250450000 176860000 202960000 165910000 172600000 172240000 164490000 181870000 13 13 10 13 13 13 13 13 13 13 13 54558000 84968000 415680 91754000 84538000 112700000 70000000 65152000 64799000 60252000 67392000 50801000 79309000 5186900 93438000 80709000 112450000 71604000 68495000 66241000 59047000 64930000 5 5 3 5 5 5 5 5 5 5 5 90801000 144250000 2751900 155760000 100320000 84082000 92195000 103190000 104090000 108170000 121790000 84564000 134650000 10139000 157010000 96153000 90507000 94311000 104100000 106000000 105440000 116940000 8 8 7 8 8 8 8 8 8 8 8 13793000000 7373000000 6419700000 21383 1730 19653 111521;111522;111523;111524;111525;111526 135249;135250;135251;135252;135253;135254;135255;135256;135257;135258;135259;135260;135261 135254 13 VVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYK Unmodified 4123.1102 0.11018952 649 P13051;P13051-2 UNG Uracil-DNA glycosylase yes no 0 0 0 1 By MS/MS By MS/MS 3 0 2 1 1 69.235 68.877 5 1.4383E-16 24914 20211116_3441_TMUAki_TMT10x_S_F3 108.6 99.911 7261500 12957000 147430 12534000 8022900 9433600 7866700 5355900 5533400 5656700 7805000 6762000 12089000 720480 12771000 7695800 9710000 7915500 5660300 5812000 5512200 7458900 3 3 2 3 3 3 3 3 3 3 3 2641400 5236300 43692 5054000 2484900 4761000 3060300 2175300 2231200 2216400 2786700 2459700 4885400 257520 5164400 2399800 4810200 3048500 2343400 2325800 2162900 2671000 1 1 1 1 1 1 1 1 1 1 1 4620100 7721000 103740 7480500 5538000 4672600 4806300 3180700 3302200 3440300 5018300 4302300 7203600 462960 7606300 5296100 4899800 4867000 3316900 3486100 3349300 4787900 2 2 1 2 2 2 2 2 2 2 2 1538100000 492250000 1045900000 21384 649 19654 111527;111528 135262;135263;135264 135264 3 VVINVPIFK Unmodified 1027.643 0.64300263 1074 P48506 GCLC Glutamate--cysteine ligase catalytic subunit yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 74.871 74.797 2 2.8904E-05 27255 20211116_3441_TMUAki_TMT10x_S_F3 133.6 116.82 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21385 1074 19655 111529;111530 135265;135266 135266 2 VVLAEVIQAFSAPENAVR Unmodified 1912.0418 0.04181182 2592 Q99622 C12orf57 Protein C10 yes yes 0 0 0 0 By MS/MS By MS/MS 4.35 2.83 3 5 1 2 2 4 9 8 81.918 81.918 2;3 3.712E-71 27111 20211116_3436_TMUAki_TMT10x_P_F8 294.83 265.88 11082000 17755000 51597 16262000 11202000 17102000 12581000 8114500 9300400 9783600 12886000 10318000 16562000 708230 16708000 10773000 17169000 12588000 8753800 9732400 9486400 12320000 16 16 5 16 16 16 16 16 16 16 16 7255000 11282000 13161 10339000 6315000 12280000 7242400 5236500 6228600 6504600 8201300 6754600 10524000 398580 10643000 6074000 12232000 7266400 5717600 6450900 6300500 7850400 10 10 2 10 10 10 10 10 10 10 10 3826800 6472700 38436 5923000 4886900 4822100 5338900 2878000 3071800 3279000 4685000 3563300 6037700 309650 6064800 4698700 4936600 5321700 3036200 3281500 3186000 4469500 6 6 3 6 6 6 6 6 6 6 6 6794700000 3514800000 3279900000 21386 2592 19656 111531;111532;111533;111534;111535;111536;111537;111538;111539;111540;111541;111542;111543;111544;111545;111546;111547 135267;135268;135269;135270;135271;135272;135273;135274;135275;135276;135277;135278;135279;135280;135281;135282;135283 135276 17 VVLAYEPVWAIGTGK Unmodified 1601.8817 0.88172935 1271 P60174;P60174-1;P60174-4 TPI1 Triosephosphate isomerase yes no 0 0 0 0 By MS/MS By MS/MS 2.66 1.81 16 30 15 5 3 4 41 32 54.358 54.306 2;3 1.4248E-33 27197 20211116_3429_TMUAki_TMT10x_P_F2 231.92 205.8 306740000 470140000 1602300 514440000 349700000 323440000 364880000 134850000 105390000 173540000 310110000 285600000 438860000 23774000 518830000 335670000 337050000 361280000 147790000 125830000 167900000 292810000 66 66 42 66 66 66 66 66 66 66 66 161920000 240670000 765940 263930000 164980000 219890000 197610000 68600000 56723000 90807000 157110000 150760000 224660000 11479000 266960000 159010000 223330000 194370000 78048000 67433000 87772000 148450000 38 38 20 38 38 38 38 38 38 38 38 144820000 229470000 836380 250510000 184710000 103550000 167270000 66254000 48667000 82735000 153000000 134840000 214200000 12295000 251880000 176660000 113720000 166910000 69738000 58402000 80124000 144360000 28 28 22 28 28 28 28 28 28 28 28 50132000000 28843000000 21290000000 21387 1271 19657 111548;111549;111550;111551;111552;111553;111554;111555;111556;111557;111558;111559;111560;111561;111562;111563;111564;111565;111566;111567;111568;111569;111570;111571;111572;111573;111574;111575;111576;111577;111578;111579;111580;111581;111582;111583;111584;111585;111586;111587;111588;111589;111590;111591;111592;111593;111594;111595;111596;111597;111598;111599;111600;111601;111602;111603;111604;111605;111606;111607;111608;111609;111610;111611;111612;111613;111614;111615;111616;111617;111618;111619;111620 135284;135285;135286;135287;135288;135289;135290;135291;135292;135293;135294;135295;135296;135297;135298;135299;135300;135301;135302;135303;135304;135305;135306;135307;135308;135309;135310;135311;135312;135313;135314;135315;135316;135317;135318;135319;135320;135321;135322;135323;135324;135325;135326;135327;135328;135329;135330;135331;135332;135333;135334;135335;135336;135337;135338;135339;135340;135341;135342;135343;135344;135345;135346;135347;135348;135349;135350;135351;135352;135353;135354;135355;135356;135357;135358;135359;135360;135361;135362 135306 79 VVLDDKDYFLFR Unmodified 1528.7926 0.79257999 1316 P61604 HSPE1 10 kDa heat shock protein, mitochondrial yes yes 0 0 0 1 By MS/MS By MS/MS 5.75 1.97 2 2 2 4 4 6 14 6 24 16 64.407 64.407 2;3 3.2808E-22 24194 20211116_3442_TMUAki_TMT10x_S_F4 218.11 187.54 1011000000 1697100000 11987000 1448300000 1227000000 1725500000 1296000000 1219400000 1165000000 1285900000 1355100000 941360000 1582600000 87282000 1499200000 1178300000 1729400000 1307000000 1267400000 1197700000 1253200000 1301300000 57 57 31 57 57 57 57 57 57 57 57 544290000 880020000 6517600 756290000 562620000 1106700000 663930000 644650000 625300000 680300000 704640000 506810000 820690000 48076000 785520000 542190000 1095500000 666960000 679830000 640650000 662950000 677290000 33 33 17 33 33 33 33 33 33 33 33 466720000 817050000 5469400 692000000 664400000 618760000 632110000 574790000 539720000 605640000 650440000 434550000 761920000 39205000 713690000 636100000 633880000 640000000 587550000 557040000 590230000 624030000 24 24 14 24 24 24 24 24 24 24 24 176220000000 90509000000 85708000000 21388 1316 19658 111621;111622;111623;111624;111625;111626;111627;111628;111629;111630;111631;111632;111633;111634;111635;111636;111637;111638;111639;111640;111641;111642;111643;111644;111645;111646;111647;111648;111649;111650;111651;111652;111653;111654;111655;111656;111657;111658;111659;111660 135363;135364;135365;135366;135367;135368;135369;135370;135371;135372;135373;135374;135375;135376;135377;135378;135379;135380;135381;135382;135383;135384;135385;135386;135387;135388;135389;135390;135391;135392;135393;135394;135395;135396;135397;135398;135399;135400;135401;135402;135403;135404;135405;135406;135407;135408;135409;135410;135411;135412;135413;135414;135415;135416;135417;135418;135419 135402 57 VVLDDKDYFLFRDGDILGK Unmodified 2227.1525 0.15248448 1316 P61604 HSPE1 10 kDa heat shock protein, mitochondrial yes yes 0 0 0 2 By MS/MS By MS/MS 6 0.894 2 1 2 3 2 77.172 77.201 4 1.0588E-23 24594 20211116_3434_TMUAki_TMT10x_P_F6 169.84 146.11 13919000 25543000 76629 19104000 21730000 24365000 18336000 23684000 20295000 19967000 21724000 12960000 23810000 1299900 20023000 20752000 24481000 18837000 24004000 20611000 19654000 20913000 2 2 1 2 2 2 2 2 2 2 2 7532900 13275000 76629 10350000 7090600 16371000 9110300 13634000 11633000 10301000 11549000 7014500 12376000 689750 10855000 6854200 16245000 9213500 13900000 11722000 10198000 11143000 1 1 1 1 1 1 1 1 1 1 1 6385800 12268000 0 8754700 14639000 7993200 9225400 10051000 8661300 9666000 10176000 5945500 11435000 610140 9168100 13898000 8236100 9623400 10103000 8889800 9456200 9769100 1 1 0 1 1 1 1 1 1 1 1 5749200000 2705600000 3043600000 21389 1316 19659 111661;111662;111663;111664;111665 135420;135421 135420 2 VVLDVGSGTGILCMFAAK Unmodified 1836.9478 0.94777678 2612 Q99873;Q99873-2;Q99873-3;Q99873-5 PRMT1 Protein arginine N-methyltransferase 1 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 80.672 80.622 3 2.6203E-15 29463 20211116_3441_TMUAki_TMT10x_S_F3 129.38 86.565 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21390 2612 19660 111666;111667 135422;135423 135423 2 VVLDVGSGTGILCMFAAK Oxidation (M) 1852.9427 0.9426914 2612 Q99873;Q99873-2;Q99873-3;Q99873-5 PRMT1 Protein arginine N-methyltransferase 1 yes no 0 0 1 0 By MS/MS 2 0 1 1 78.929 78.905 3 0.0058025 26023 20211116_3440_TMUAki_TMT10x_S_F2 55.833 36.014 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21391 2612 19660 111668 135424 135424 2860 1 VVLEGPAPWGFR Unmodified 1326.7085 0.70845643 2916 Q9NR12;Q9NR12-6;Q9NR12-2;Q9NR12-3;Q9NR12-5;Q9NR12-4 PDLIM7 PDZ and LIM domain protein 7 yes no 0 0 0 0 By MS/MS 1 0 1 1 71.814 71.814 2 1.5868E-05 22963 20211116_3428_TMUAki_TMT10x_P_F1 103.19 75.024 3770600 6444000 0 5455400 3719500 6949600 4402800 3134000 3088200 3777900 4466100 3510600 6009200 290780 5657600 3582200 6901900 4389500 3398300 3248200 3663200 4265600 1 1 0 1 1 1 1 1 1 1 1 3770600 6444000 0 5455400 3719500 6949600 4402800 3134000 3088200 3777900 4466100 3510600 6009200 290780 5657600 3582200 6901900 4389500 3398300 3248200 3663200 4265600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 256620000 256620000 0 21392 2916 19661 111669 135425 135425 1 VVLEHEEVR Unmodified 1108.5877 0.58767259 3339 Q9Y678 COPG1 Coatomer subunit gamma-1 yes yes 0 0 0 0 By MS/MS 2 1 1 1 2 32.27 32.163 3 0.00082935 9907 20211116_3441_TMUAki_TMT10x_S_F3 87.895 43.76 712680 1171600 0 1138100 812660 838220 792200 1055500 1184900 947760 1216700 663570 1093100 59324 1158900 778620 877300 816780 1058900 1189300 930070 1172700 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 712680 1171600 0 1138100 812660 838220 792200 1055500 1184900 947760 1216700 663570 1093100 59324 1158900 778620 877300 816780 1058900 1189300 930070 1172700 2 2 0 2 2 2 2 2 2 2 2 32797000 0 32797000 21393 3339 19662 111670;111671 135426;135427 135427 2 VVLENEAVR Unmodified 1027.5662 0.56620887 3077 Q9UBF2;Q9UBF2-2 COPG2 Coatomer subunit gamma-2 yes no 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 2 3 39.151 39.036 2 0.00032044 12747 20211116_3441_TMUAki_TMT10x_S_F3 93.178 40.696 1149000 1956900 3433.9 2069800 2206300 2046600 1420000 1692100 1866300 1379600 2041300 1069800 1826400 110440 2103200 2095800 2078400 1495300 1729000 1885300 1360300 1963800 2 2 1 2 2 2 2 2 2 2 2 794830 1316500 0 1440500 1899800 1741200 1154400 1131600 1234900 911970 1450600 740040 1228900 78544 1465300 1802700 1741600 1212400 1174700 1260500 899720 1392700 1 1 0 1 1 1 1 1 1 1 1 354160 640420 3433.9 629280 306480 305350 265650 560530 631340 467640 590740 329780 597540 31895 637910 293050 336790 282920 554250 624830 460550 571120 1 1 1 1 1 1 1 1 1 1 1 152430000 111470000 40956000 21394 3077 19663 111672;111673;111674;111675;111676 135428;135429 135429 2 VVLIGDSGVGK Unmodified 1042.6023 0.60226003 1836 Q15907;P62491;P62491-2;Q15907-2 RAB11B;RAB11A Ras-related protein Rab-11B;Ras-related protein Rab-11A yes no 0 0 0 0 By MS/MS By MS/MS 6.6 0.49 2 3 3 2 55.508 55.741 2 3.0542E-08 15770 20211116_3434_TMUAki_TMT10x_P_F6 152.28 35.972 17481000 27434000 271110 31228000 23291000 22204000 17666000 20983000 20534000 18610000 23124000 16278000 25613000 1744200 31454000 22205000 23149000 18302000 21324000 20856000 18273000 22227000 3 3 2 3 3 3 3 3 3 3 3 5249700 8001400 0 8740600 9810800 10873000 5958400 6315800 5874800 5330100 6798900 4887700 7468900 459990 8896500 9307600 10843000 6242700 6621900 6013100 5246300 6530100 1 1 0 1 1 1 1 1 1 1 1 12231000 19432000 271110 22487000 13480000 11331000 11707000 14667000 14659000 13280000 16325000 11391000 18144000 1284200 22558000 12898000 12306000 12059000 14703000 14843000 13027000 15697000 2 2 2 2 2 2 2 2 2 2 2 1828100000 662000000 1166100000 21395 1836 19664 111677;111678;111679;111680;111681 135430;135431;135432;135433;135434 135430 5 VVLIGGKPDR Unmodified 1052.6342 0.63422886 1329;1330 P61978-2;P61978;P61978-3 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 0 0 0 1 By MS/MS By MS/MS 4.14 3.09 2 2 1 2 3 4 41.179 41.264 3 0.00029897 10513 20211116_3436_TMUAki_TMT10x_P_F8 104.22 82.176 21623000 33226000 15426 35575000 25380000 26358000 23023000 13195000 16907000 17466000 23990000 20132000 31012000 1612300 35989000 24262000 27125000 23288000 14208000 17719000 16883000 22923000 7 7 2 7 7 7 7 7 7 7 7 11361000 16754000 15426 17856000 17228000 16966000 11677000 7172500 9503900 9290800 12283000 10578000 15637000 1015000 18125000 16379000 17119000 12068000 7850200 9862300 8986600 11763000 3 3 2 3 3 3 3 3 3 3 3 10262000 16472000 0 17719000 8152600 9392200 11346000 6022300 7403300 8175600 11707000 9553500 15375000 597280 17864000 7882800 10006000 11220000 6357600 7856800 7896000 11160000 4 4 0 4 4 4 4 4 4 4 4 2723500000 1733300000 990220000 21396 1329;1330 19665 111682;111683;111684;111685;111686;111687;111688 135435;135436;135437;135438;135439;135440;135441 135437 7 VVLLGEFLHPCEDDIVCK Unmodified 2142.0489 0.048947388 3011 Q9NY12;Q9NY12-2 GAR1 H/ACA ribonucleoprotein complex subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS 5 1.07 3 2 1 1 2 5 78.07 78.077 3 9.6922E-05 25044 20211116_3444_TMUAki_TMT10x_S_F5 73.208 61.735 16885000 29646000 382680 23315000 18103000 45313000 23354000 27606000 27754000 26218000 25489000 15724000 27639000 1743800 24561000 17511000 44407000 23551000 28920000 27962000 25663000 24659000 2 2 1 2 2 2 2 2 2 2 2 16885000 29646000 382680 23315000 18103000 45313000 23354000 27606000 27754000 26218000 25489000 15724000 27639000 1743800 24561000 17511000 44407000 23551000 28920000 27962000 25663000 24659000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6325100000 1880400000 4444700000 21397 3011 19666 111689;111690;111691;111692;111693;111694;111695 135442;135443;135444;135445 135445 4 VVLLGEGCVGK Unmodified 1129.6165 0.61652988 3165 Q9UL25 RAB21 Ras-related protein Rab-21 yes yes 0 0 0 0 By MS/MS 6 0 1 1 57.722 57.777 2 0.0042666 17012 20211116_3445_TMUAki_TMT10x_S_F6 72.325 47.402 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21398 3165 19667 111696 135446 135446 1 VVLLHGPPGTGK Unmodified 1173.687 0.68699271 1821 Q15645 TRIP13 Pachytene checkpoint protein 2 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 3.25 2.77 1 2 1 2 2 44.158 44.061 3 2.5703E-07 13217 20211116_3429_TMUAki_TMT10x_P_F2 122.69 102.36 6072500 9139700 37936 11273000 11866000 11715000 6956500 6618000 6985800 6699200 8606500 5654000 8536300 566340 11357000 11253000 11793000 7313900 6988400 7163100 6539500 8252200 4 4 1 4 4 4 4 4 4 4 4 4742900 7013600 37936 8737300 10642000 10449000 5720900 5119100 5526600 5198300 6708000 4416100 6550900 479060 8817300 10081000 10419000 6054200 5476100 5672700 5073700 6434400 3 3 1 3 3 3 3 3 3 3 3 1329600 2126100 0 2536100 1223500 1266700 1235600 1499000 1459200 1500900 1898500 1237900 1985400 87278 2539300 1172100 1374000 1259700 1512400 1490300 1465800 1817800 1 1 0 1 1 1 1 1 1 1 1 841370000 662450000 178920000 21399 1821 19668 111697;111698;111699;111700 135447;135448;135449;135450;135451 135448 5 VVLPCSVQEYQVGQLYSVAEASK Unmodified 2553.2785 0.27848963 1084 P48739;P48739-2;P48739-3 PITPNB Phosphatidylinositol transfer protein beta isoform yes no 0 0 0 0 By MS/MS By matching 7.33 0.471 2 1 2 1 78.122 78.162 3 2.5431E-11 25644 20211116_3436_TMUAki_TMT10x_P_F8 112.54 103.01 2941000 4981100 17177 4425600 3123300 5712500 3834100 3477100 3263400 3311700 3819900 2738000 4645800 205300 4573300 3010000 5689900 3834300 3643200 3364600 3241200 3667700 2 2 1 2 2 2 2 2 2 2 2 2941000 4981100 17177 4425600 3123300 5712500 3834100 3477100 3263400 3311700 3819900 2738000 4645800 205300 4573300 3010000 5689900 3834300 3643200 3364600 3241200 3667700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4101900000 2658700000 1443200000 21400 1084 19669 111701;111702;111703 135452;135453 135453 2 VVLPTFILEPR Unmodified 1282.7649 0.76490868 2737 Q9BZF1;Q9BZF1-3;Q9BZF1-2 OSBPL8 Oxysterol-binding protein-related protein 8 yes no 0 0 0 0 By MS/MS 2 0 1 1 78.6 78.57 2 0.00018398 27177 20211116_3429_TMUAki_TMT10x_P_F2 98.048 69.874 6619000 11684000 69236 9540500 5755800 12924000 7268000 6837000 6948400 7416800 8203400 6163500 10894000 601200 9934900 5561200 12820000 7283300 7275900 7127300 7219700 7874700 1 1 1 1 1 1 1 1 1 1 1 6619000 11684000 69236 9540500 5755800 12924000 7268000 6837000 6948400 7416800 8203400 6163500 10894000 601200 9934900 5561200 12820000 7283300 7275900 7127300 7219700 7874700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 904000000 904000000 0 21401 2737 19670 111704 135454 135454 1 VVLPYLVPK Unmodified 1026.6478 0.64775366 2350 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 0 By MS/MS 4 0 1 1 72.926 72.792 2 0.00032592 24184 20211116_3442_TMUAki_TMT10x_S_F4 92.925 67.752 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21402 2350 19671 111705 135455 135455 1 VVLQELRR Unmodified 1011.6189 0.61891314 1627;1833 Q13404;Q13404-7;Q13404-2;Q13404-1;Q13404-8;Q13404-6;Q15819 UBE2V1;UBE2V2 Ubiquitin-conjugating enzyme E2 variant 1;Ubiquitin-conjugating enzyme E2 variant 2 no no 0 0 0 1 By MS/MS By MS/MS 4 3.29 2 1 2 2 3 37.658 37.733 3 0.0026083 11192 20211116_3439_TMUAki_TMT10x_S_F1 97.635 56.208 766060 1203500 28374 1392200 932380 1134800 986140 934250 1096500 918500 1044800 713490 1123700 92285 1403100 897080 1167500 1000900 959540 1108800 897700 1009500 2 2 2 2 2 2 2 2 2 2 2 298720 442910 22901 526550 568770 663880 410320 389530 412440 348930 412340 278310 413590 49891 533310 542770 661680 424560 408680 419490 342450 397770 1 1 1 1 1 1 1 1 1 1 1 467350 760560 5473.1 865630 363600 470950 575810 544720 684050 569570 632450 435190 710070 42394 869760 354300 505770 576330 550850 689340 555250 611700 1 1 1 1 1 1 1 1 1 1 1 112600000 56534000 56065000 21403 1627;1833 19672 111706;111707;111708;111709;111710 135456;135457;135458 135457 3 VVLTAEVSGGSR Unmodified 1173.6354 0.63535107 2579 Q99523;Q99523-2 SORT1 Sortilin yes no 0 0 0 0 By MS/MS 6 0.816 1 1 1 3 42.254 42.399 2 4.1276E-05 10582 20211116_3444_TMUAki_TMT10x_S_F5 101.3 84.368 768900 1309800 1947.1 1420600 671400 622380 663030 990510 951750 863750 1080800 715930 1222600 64196 1429500 643680 691550 681920 984710 960190 848810 1038600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 768900 1309800 1947.1 1420600 671400 622380 663030 990510 951750 863750 1080800 715930 1222600 64196 1429500 643680 691550 681920 984710 960190 848810 1038600 1 1 1 1 1 1 1 1 1 1 1 60518000 0 60518000 21404 2579 19673 111711;111712;111713 135459;135460 135459 2 VVLVLAGR Unmodified 825.54362 0.54362294 1310 P61353 RPL27 60S ribosomal protein L27 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.707 1 2 1 3 1 54.961 55.119 2 0.00067434 16449 20211116_3431_TMUAki_TMT10x_P_F4 136.08 86.87 3218400 5348800 0 5973100 6952100 7540300 3727300 3656600 3192500 3273400 4005400 2996400 4993300 288990 6072900 6583000 7497600 3932800 3902300 3300100 3212700 3838700 1 1 0 1 1 1 1 1 1 1 1 3218400 5348800 0 5973100 6952100 7540300 3727300 3656600 3192500 3273400 4005400 2996400 4993300 288990 6072900 6583000 7497600 3932800 3902300 3300100 3212700 3838700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 619920000 619920000 0 21405 1310 19674 111714;111715;111716;111717 135461;135462;135463;135464 135463 4 VVLVTGAGAGLGR Unmodified 1168.6928 0.69280637 1161 P51659 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 53.025 52.789 2 3.4135E-25 18253 20211116_3441_TMUAki_TMT10x_S_F3 225.91 195.56 16832000 26164000 38748 35183000 26825000 20579000 16950000 20279000 21768000 19023000 26097000 15672000 24447000 1415200 35037000 25465000 21859000 17858000 20596000 22088000 18630000 25041000 4 4 2 4 4 4 4 4 4 4 4 3971000 6188800 0 8454200 14120000 9678200 5441900 5253200 5492800 4819900 6140500 3696900 5783200 405370 8482900 13317000 9684500 5975300 5551500 5608700 4725200 5903500 1 1 0 1 1 1 1 1 1 1 1 12861000 19975000 38748 26729000 12704000 10901000 11508000 15026000 16275000 14203000 19957000 11975000 18664000 1009800 26554000 12148000 12174000 11883000 15044000 16479000 13905000 19138000 3 3 2 3 3 3 3 3 3 3 3 940630000 259990000 680640000 21406 1161 19675 111718;111719;111720;111721 135465;135466;135467;135468;135469 135469 5 VVMALGDYMGASCHACIGGTNVR 2 Oxidation (M) 2470.0862 0.086154305 1277 P60842;P60842-2 EIF4A1 Eukaryotic initiation factor 4A-I yes no 0 0 2 0 By MS/MS 2 0 1 1 48.323 48.233 3 0.001533 13554 20211116_3440_TMUAki_TMT10x_S_F2 61.345 57.625 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21407 1277 19676 111722 135470 135470 1736;1737 1 VVNAVLTQIDQIKR Unmodified 1595.9359 0.93589019 1821 Q15645 TRIP13 Pachytene checkpoint protein 2 homolog yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 74.114 73.995 3 3.2361E-37 24102 20211116_3431_TMUAki_TMT10x_P_F4 240.2 208.13 15679000 24812000 130430 25296000 20549000 28477000 19285000 19145000 18779000 19554000 20306000 14600000 23154000 1489200 25819000 19679000 28605000 19612000 19948000 19181000 19080000 19541000 5 5 4 5 5 5 5 5 5 5 5 11483000 17402000 107260 17548000 15400000 24270000 15075000 13856000 13338000 13898000 14096000 10693000 16239000 1106800 17992000 14765000 24076000 15254000 14615000 13672000 13572000 13575000 3 3 3 3 3 3 3 3 3 3 3 4196100 7409900 23170 7747100 5148700 4207400 4210700 5288500 5441100 5655700 6209800 3907200 6915500 382360 7826600 4914600 4528800 4358200 5333400 5508800 5508500 5966500 2 2 1 2 2 2 2 2 2 2 2 4024600000 3095200000 929400000 21408 1821 19677 111723;111724;111725;111726 135471;135472;135473;135474;135475 135473 5 VVNDDCTHEADVYIENGIIQQVGR Unmodified 2743.2872 0.28715684 2617 Q9BPU6 DPYSL5 Dihydropyrimidinase-related protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.957 1 2 2 1 3 3 66.844 66.608 3 9.2627E-49 22848 20211116_3430_TMUAki_TMT10x_P_F3 214.92 206.13 18450000 30960000 340740 27831000 16599000 28657000 24165000 21198000 22502000 22480000 22702000 17181000 28877000 1526500 28626000 16126000 28975000 24065000 21967000 22971000 21902000 21894000 12 12 10 12 12 12 12 12 12 12 12 9325900 15056000 159580 13579000 8754600 17519000 10430000 10645000 10970000 11642000 10939000 8684500 14043000 909130 14016000 8445800 17450000 10508000 11200000 11136000 11330000 10554000 8 8 7 8 8 8 8 8 8 8 8 9123600 15904000 181160 14252000 7844400 11138000 13736000 10553000 11531000 10838000 11763000 8496400 14834000 617360 14610000 7680700 11526000 13556000 10767000 11836000 10573000 11340000 4 4 3 4 4 4 4 4 4 4 4 5702900000 2800400000 2902600000 21409 2617 19678 111727;111728;111729;111730;111731;111732 135476;135477;135478;135479;135480;135481;135482;135483;135484;135485;135486;135487 135478 12 VVNGKVEYFLK Unmodified 1294.7285 0.72852317 1607 Q13185 CBX3 Chromobox protein homolog 3 yes yes 0 0 0 1 By MS/MS By MS/MS 1.75 0.433 1 3 3 1 59.913 59.723 3 1.8768E-11 18314 20211116_3440_TMUAki_TMT10x_S_F2 127.37 83.745 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21410 1607 19679 111733;111734;111735;111736 135488;135489;135490;135491 135491 4 VVNIIPVIAK Unmodified 1064.6958 0.69576648 3111 Q9UH03;Q9UH03-2 SEPT3 Neuronal-specific septin-3 yes no 0 0 0 0 By MS/MS 3 0 1 1 73.572 73.258 2 7.6024E-09 26577 20211116_3441_TMUAki_TMT10x_S_F3 144.12 128.49 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21411 3111 19680 111737 135492 135492 1 VVNIVPVIAK Unmodified 1050.6801 0.68011642 3118 Q9UHD8-5;Q9UHD8;Q9UHD8-2;Q9UHD8-7;Q9UHD8-3;Q9UHD8-4;Q9UHD8-9;Q9UHD8-8 SEPT9 Septin-9 yes no 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 67.573 67.3 2;3 9.8062E-09 23118 20211116_3430_TMUAki_TMT10x_P_F3 138.1 119.29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21412 3118 19681 111738;111739;111740 135493;135494;135495 135494 3 VVNPLFEK Unmodified 944.53312 0.53311783 1358 P62424 RPL7A 60S ribosomal protein L7a yes yes 0 0 0 0 By MS/MS By MS/MS 6.8 0.748 2 2 1 2 3 58.615 58.952 2 0.00043998 18892 20211116_3435_TMUAki_TMT10x_P_F7 149.65 112.63 40499000 66166000 570070 73466000 68964000 72778000 48338000 57248000 60372000 51598000 59482000 37713000 61767000 4287600 74421000 65642000 73835000 50482000 58821000 60860000 50626000 57407000 5 5 5 5 5 5 5 5 5 5 5 23145000 36527000 350440 40611000 51760000 57259000 32533000 32073000 34601000 28504000 33349000 21553000 34099000 2646300 41390000 49168000 56739000 34069000 33774000 35066000 27986000 32210000 3 3 3 3 3 3 3 3 3 3 3 17353000 29639000 219640 32855000 17204000 15519000 15805000 25175000 25771000 23093000 26132000 16159000 27669000 1641300 33031000 16474000 17096000 16413000 25047000 25794000 22640000 25198000 2 2 2 2 2 2 2 2 2 2 2 2419300000 1327300000 1092000000 21413 1358 19682 111741;111742;111743;111744;111745 135496;135497;135498;135499;135500;135501 135497 6 VVNVANVGAVPSGQDNIHR Unmodified 1945.013 0.012971308 70 O00203;O00203-3 AP3B1 AP-3 complex subunit beta-1 yes no 0 0 0 0 By MS/MS 5 0 1 1 43.483 43.586 3 0.0023617 12086 20211116_3433_TMUAki_TMT10x_P_F5 62.226 50.787 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21414 70 19683 111746 135502 135502 1 VVPAYVPTPIHPIFGGATHSAFGLK Unmodified 2575.3951 0.39511479 2483 Q96HA1;Q96HA1-2;Q96HA1-3 POM121 Nuclear envelope pore membrane protein POM 121 yes no 0 0 0 0 By MS/MS 6 0 1 1 70.802 70.75 4 1.0888E-05 21978 20211116_3434_TMUAki_TMT10x_P_F6 76.733 68.239 4983800 8563900 0 8587200 6025500 10121000 5702500 5751300 4357300 5321100 6154500 4639900 7991100 366750 8781600 5765500 10118000 5759600 6055200 4555400 5214600 5881400 1 1 0 1 1 1 1 1 1 1 1 4983800 8563900 0 8587200 6025500 10121000 5702500 5751300 4357300 5321100 6154500 4639900 7991100 366750 8781600 5765500 10118000 5759600 6055200 4555400 5214600 5881400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 291900000 291900000 0 21415 2483 19684 111747 135503 135503 1 VVPGFIVQGGDPTGTGSGGESIYGAPFKDEFHSR Unmodified 3464.6637 0.66369767 2025 Q6UX04;Q6UX04-2 CWC27 Peptidyl-prolyl cis-trans isomerase CWC27 homolog yes no 0 0 0 1 By MS/MS 7.5 0.5 1 1 2 72.768 72.793 4 2.0812E-16 22964 20211116_3447_TMUAki_TMT10x_S_F8 110.31 105.18 2323200 3631400 113880 4140800 3008100 2646000 2858600 1806400 1796600 2056700 2734700 2164000 3390400 308340 4166000 2887500 2768900 2874500 1886500 1907500 1998400 2609000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2323200 3631400 113880 4140800 3008100 2646000 2858600 1806400 1796600 2056700 2734700 2164000 3390400 308340 4166000 2887500 2768900 2874500 1886500 1907500 1998400 2609000 1 1 1 1 1 1 1 1 1 1 1 2231000000 0 2231000000 21416 2025 19685 111748;111749 135504 135504 1 VVPGYGHAVLR Unmodified 1166.656 0.65602693 330 O75390 CS Citrate synthase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 2.8 3 2 1 1 2 1 11 9 12 32.284 32.414 2;3 4.1405E-23 10854 20211116_3439_TMUAki_TMT10x_S_F1 238.7 191.63 21375000 34102000 288470 36113000 27678000 26802000 22359000 21494000 22483000 19917000 26529000 19904000 31828000 2071700 36560000 26419000 27760000 22962000 22074000 23011000 19517000 25466000 28 28 16 28 28 28 28 28 28 28 28 10127000 15236000 45035 16054000 16603000 16366000 10289000 10004000 10507000 9072700 12133000 9429000 14220000 932150 16325000 15762000 16510000 10773000 10464000 10737000 8899300 11654000 12 12 5 12 12 12 12 12 12 12 12 11248000 18866000 243430 20059000 11075000 10436000 12070000 11490000 11976000 10845000 14396000 10475000 17608000 1139500 20235000 10658000 11249000 12188000 11610000 12273000 10618000 13812000 16 16 11 16 16 16 16 16 16 16 16 4399200000 2230100000 2169100000 21417 330 19686 111750;111751;111752;111753;111754;111755;111756;111757;111758;111759;111760;111761;111762;111763;111764;111765;111766;111767;111768;111769;111770 135505;135506;135507;135508;135509;135510;135511;135512;135513;135514;135515;135516;135517;135518;135519;135520;135521;135522;135523;135524;135525;135526;135527;135528;135529;135530;135531;135532;135533;135534;135535;135536;135537 135521 33 VVPGYGHAVLRK Unmodified 1294.751 0.75098995 330 O75390 CS Citrate synthase, mitochondrial yes yes 0 0 0 1 By matching By MS/MS 2.5 0.5 1 1 1 1 36.78 36.541 4 0.00017697 11662 20211116_3441_TMUAki_TMT10x_S_F3 87.789 72.587 405430 648410 5033.2 645540 452440 427380 438190 511360 482120 537870 531400 377530 605020 38962 655500 433770 450730 446580 516470 490300 524220 511100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 405430 648410 5033.2 645540 452440 427380 438190 511360 482120 537870 531400 377530 605020 38962 655500 433770 450730 446580 516470 490300 524220 511100 1 1 1 1 1 1 1 1 1 1 1 67119000 17935000 49183000 21418 330 19687 111771;111772 135538 135538 1 VVPIASLTPYQSK Unmodified 1401.7868 0.78676633 828 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 64.921 64.652 3 3.8278E-09 21552 20211116_3429_TMUAki_TMT10x_P_F2 122.33 111.16 12226000 20520000 1155 24710000 14352000 16615000 13640000 13865000 14985000 13156000 15961000 11383000 19163000 979080 24792000 13739000 17364000 13914000 14215000 15220000 12878000 15367000 3 3 1 3 3 3 3 3 3 3 3 4097400 6524000 0 8042700 7403200 9326300 5961600 4599900 5178100 4622900 5057200 3814900 6093300 357990 8116800 7060500 9315600 6098300 4916100 5297800 4514000 4882300 1 1 0 1 1 1 1 1 1 1 1 8128500 13996000 1155 16668000 6948300 7288900 7678100 9265300 9806700 8533000 10904000 7568200 13070000 621090 16675000 6678400 8048300 7816000 9298600 9922400 8363900 10485000 2 2 1 2 2 2 2 2 2 2 2 1718600000 940820000 777760000 21419 828 19688 111773;111774 135539;135540;135541 135539 3 VVPLADIITPNQFEAELLSGR Unmodified 2281.2318 0.23179744 109 O00764;O00764-2;O00764-3 PDXK Pyridoxal kinase yes no 0 0 0 0 By matching By MS/MS 4.14 1.81 2 1 1 1 1 1 1 6 81.505 81.504 3 1.8346E-09 26439 20211116_3444_TMUAki_TMT10x_S_F5 102.07 81.977 1905400 3152000 0 3689800 2307900 1725800 2521600 1167100 1108900 1358800 1993700 1773800 2943100 128110 3696900 2216000 1866800 2502900 1220600 1221300 1319200 1895900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1905400 3152000 0 3689800 2307900 1725800 2521600 1167100 1108900 1358800 1993700 1773800 2943100 128110 3696900 2216000 1866800 2502900 1220600 1221300 1319200 1895900 1 1 0 1 1 1 1 1 1 1 1 1912900000 183580000 1729300000 21420 109 19689 111775;111776;111777;111778;111779;111780;111781 135542 135542 1 VVPLYGR Unmodified 802.47012 0.47012364 2614 Q99942 RNF5 E3 ubiquitin-protein ligase RNF5 yes yes 0 0 0 0 By MS/MS 8 0 1 1 43.037 43.212 2 0.032194 11352 20211116_3436_TMUAki_TMT10x_P_F8 74.597 39.892 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21421 2614 19690 111782 135543 135543 1 VVQETVLVEER Unmodified 1299.7034 0.70343063 3239 Q9Y2J2;Q9Y2J2-2;Q9Y2J2-4 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed yes no 0 0 0 0 By MS/MS 3 0 1 1 47.842 47.818 2 0.0018895 15113 20211116_3430_TMUAki_TMT10x_P_F3 81.002 58.916 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21422 3239 19691 111783 135544 135544 1 VVQLDVR Unmodified 827.4865 0.48650199 448 O95831;O95831-3;O95831-6;O95831-4 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 0 0 0 0 By MS/MS 4 0 1 1 42.289 42.504 2 0.086742 11729 20211116_3442_TMUAki_TMT10x_S_F4 60.799 10.759 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21423 448 19692 111784 135545 135545 1 VVQLHEYSEELEK Unmodified 1601.7937 0.7937022 1723 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.957 1 2 2 1 3 3 51.106 51.105 3 1.2549E-14 14795 20211116_3431_TMUAki_TMT10x_P_F4 160.84 137.82 19078000 31754000 477630 36148000 26875000 26518000 20820000 23232000 23928000 21837000 26473000 17767000 29646000 2136000 36423000 25646000 27535000 21532000 23745000 24297000 21385000 25458000 6 6 6 6 6 6 6 6 6 6 6 6337900 10355000 195950 12059000 14207000 14355000 9126500 7848100 8362700 6994700 8328200 5902700 9668900 818290 12216000 13507000 14336000 9499400 8282200 8539900 6866500 8035000 2 2 2 2 2 2 2 2 2 2 2 12740000 21399000 281680 24089000 12668000 12163000 11694000 15384000 15566000 14843000 18144000 11864000 19978000 1317700 24206000 12139000 13198000 12032000 15463000 15757000 14519000 17423000 4 4 4 4 4 4 4 4 4 4 4 1435400000 813980000 621430000 21424 1723 19693 111785;111786;111787;111788;111789;111790 135546;135547;135548;135549;135550;135551;135552 135548 7 VVQMLGSLGGQINK Oxidation (M) 1458.7864 0.78644876 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 0 By MS/MS By MS/MS 1 0 3 1 2 59.098 58.949 3 0.00072066 17727 20211116_3428_TMUAki_TMT10x_P_F1 74.678 58.105 2759500 4856500 37229 4788700 5259500 7842600 4354000 5710000 5638000 4937100 4928100 2569700 4531400 298490 4935700 5022600 7753200 4503500 5890100 5654300 4853600 4775900 1 1 1 1 1 1 1 1 1 1 1 2759500 4856500 37229 4788700 5259500 7842600 4354000 5710000 5638000 4937100 4928100 2569700 4531400 298490 4935700 5022600 7753200 4503500 5890100 5654300 4853600 4775900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 445110000 330990000 114120000 21425 1433 19694 111791;111792;111793 135553;135554 135553 1946 2 VVQMLGSLGGQINK Unmodified 1442.7915 0.79153413 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 74.353 74.257 3 1.2112E-10 24736 20211116_3442_TMUAki_TMT10x_S_F4 140.31 113.21 13029000 22306000 280510 22316000 14627000 19109000 16979000 9954700 9657800 12441000 15421000 12133000 20814000 1364000 22718000 14101000 19459000 16873000 10658000 10350000 12048000 14698000 5 5 5 5 5 5 5 5 5 5 5 7862600 13049000 117880 12543000 10078000 13974000 11604000 6149800 6159800 7975100 9300800 7321700 12174000 792750 12853000 9708600 13972000 11522000 6702200 6616200 7713700 8874900 3 3 3 3 3 3 3 3 3 3 3 5166100 9256600 162630 9773800 4549000 5135000 5375200 3804900 3498000 4465700 6120700 4811300 8639300 571230 9865000 4392400 5487400 5351000 3955400 3733900 4334200 5823200 2 2 2 2 2 2 2 2 2 2 2 1120000000 663440000 456530000 21426 1433 19694 111794;111795;111796;111797;111798 135555;135556;135557;135558;135559;135560 135559 6 VVQNDAYTAPALPSSIR Unmodified 1800.937 0.9370124 2725 Q9BY77;Q9BY77-2 POLDIP3 Polymerase delta-interacting protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 6.29 0.452 5 2 3 4 55.081 55.435 2;3 1.9509E-77 15666 20211116_3434_TMUAki_TMT10x_P_F6 293.95 256.77 19535000 32354000 240280 31706000 29333000 44040000 24447000 36646000 30321000 27653000 29860000 18188000 30187000 1713300 32575000 28000000 43938000 25235000 37363000 30573000 27377000 28819000 6 6 3 6 6 6 6 6 6 6 6 13387000 21684000 150690 21549000 23287000 37691000 18677000 25363000 20990000 19388000 20756000 12464000 20233000 1121500 22234000 22205000 37124000 19258000 26230000 21244000 19181000 20029000 4 4 1 4 4 4 4 4 4 4 4 6147800 10669000 89597 10157000 6046100 6349200 5770200 11283000 9331600 8264700 9104200 5724900 9953600 591770 10341000 5795800 6813900 5977700 11132000 9329400 8196100 8789500 2 2 2 2 2 2 2 2 2 2 2 1646600000 830720000 815890000 21427 2725 19695 111799;111800;111801;111802;111803;111804;111805 135561;135562;135563;135564;135565;135566;135567;135568;135569 135563 9 VVQVSAGDSHTAALTDDGR Unmodified 1897.913 0.91298249 723 P18754;P18754-2 RCC1 Regulator of chromosome condensation yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 4 2 37.78 37.724 3 5.0537E-41 12058 20211116_3441_TMUAki_TMT10x_S_F3 206.74 189.34 1761000 2855400 31705 3465500 2893800 2710100 1894300 1920900 2146800 1939400 2366100 1639900 2666700 173390 3481000 2751100 2789700 1981500 1993400 2180700 1893300 2275700 5 5 3 5 5 5 5 5 5 5 5 1064100 1565100 27464 1982800 2113300 2098000 1205700 1020600 1140600 1051500 1270900 991000 1461900 128510 1995000 2005200 2106000 1268500 1092900 1167800 1025700 1221900 2 2 2 2 2 2 2 2 2 2 2 696900 1290300 4241.1 1482800 780450 612080 688530 900350 1006200 887850 1095300 648870 1204700 44880 1486000 745900 683730 713050 900490 1012900 867630 1053800 3 3 1 3 3 3 3 3 3 3 3 319020000 232710000 86306000 21428 723 19696 111806;111807;111808;111809;111810;111811 135570;135571;135572;135573;135574;135575 135573 6 VVSEDFLQDVSASTK Unmodified 1623.7992 0.79918151 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.56 1.22 4 4 4 3 1 7 9 71.656 71.521 2;3 1.1467E-60 22364 20211116_3444_TMUAki_TMT10x_S_F5 301.16 260.43 124910000 214090000 1383800 211790000 156490000 208350000 155320000 151480000 147330000 152770000 169350000 116310000 199760000 11097000 216170000 150040000 211190000 157370000 156920000 151010000 149150000 162680000 26 26 16 26 26 26 26 26 26 26 26 67875000 115210000 789230 115300000 88342000 149280000 95867000 81000000 80875000 84752000 91916000 63199000 107500000 6052800 118130000 84905000 148450000 96385000 85913000 83324000 82619000 88327000 13 13 9 13 13 13 13 13 13 13 13 57037000 98884000 594530 96493000 68146000 59069000 59457000 70481000 66450000 68016000 77431000 53109000 92260000 5044400 98048000 65134000 62740000 60981000 71011000 67686000 66529000 74355000 13 13 7 13 13 13 13 13 13 13 13 14372000000 7409200000 6963100000 21429 586 19697 111812;111813;111814;111815;111816;111817;111818;111819;111820;111821;111822;111823;111824;111825;111826;111827 135576;135577;135578;135579;135580;135581;135582;135583;135584;135585;135586;135587;135588;135589;135590;135591;135592;135593;135594;135595;135596;135597;135598;135599;135600;135601 135598 26 VVSHPTLPVTITAHEDR Unmodified 1870.9901 0.9901106 1586 Q13033;Q13033-2 STRN3 Striatin-3 yes no 0 0 0 0 By MS/MS 6 0 1 1 39.32 39.33 4 1.6792E-07 9163 20211116_3434_TMUAki_TMT10x_P_F6 103.5 90.087 439450 589540 0 749800 919030 987670 593180 800930 693950 571490 591110 409150 550700 40215 757160 872830 987300 621850 816880 697910 567600 573410 1 1 0 1 1 1 1 1 1 1 1 439450 589540 0 749800 919030 987670 593180 800930 693950 571490 591110 409150 550700 40215 757160 872830 987300 621850 816880 697910 567600 573410 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 70607000 70607000 0 21430 1586 19698 111828 135602 135602 1 VVSNTIEPLTLFHK Unmodified 1596.8875 0.88754301 1435 P78559;P78559-2 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 68.271 68.176 3 6.7878E-16 21414 20211116_3428_TMUAki_TMT10x_P_F1 160.27 133.67 7626400 12058000 30640 11559000 8932000 10259000 7861100 7712300 6733500 7791300 9003600 7101000 11249000 659490 11808000 8538100 10474000 7995000 7972200 6980100 7606200 8615100 2 2 1 2 2 2 2 2 2 2 2 3322900 5388300 30640 4835700 3929900 6362400 3825900 3719300 3297900 3483900 3885800 3094200 5025800 312550 4995100 3767400 6328000 3869800 3907800 3399000 3412200 3730300 1 1 1 1 1 1 1 1 1 1 1 4303500 6669300 0 6723500 5002100 3896200 4035300 3993100 3435600 4307500 5117700 4006800 6223300 346940 6813000 4770600 4145700 4125100 4064400 3581000 4194000 4884800 1 1 0 1 1 1 1 1 1 1 1 1055100000 583970000 471110000 21431 1435 19699 111829;111830;111831;111832 135603;135604;135605;135606 135603 4 VVSQEEIVR Unmodified 1057.5768 0.57677356 550 P08183;P08183-2 ABCB1 Multidrug resistance protein 1 yes no 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 36.186 36.285 2 0.00044838 11834 20211116_3441_TMUAki_TMT10x_S_F3 87.258 49.531 117500 204470 3148.3 220810 145530 124310 177320 131010 155050 121390 182550 109420 190850 13068 222670 140530 132740 177510 132570 159690 118960 175250 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 117500 204470 3148.3 220810 145530 124310 177320 131010 155050 121390 182550 109420 190850 13068 222670 140530 132740 177510 132570 159690 118960 175250 1 1 1 1 1 1 1 1 1 1 1 18988000 0 18988000 21432 550 19700 111833;111834 135607;135608 135608 2 VVSQYHELVVQAR Unmodified 1526.8205 0.82052608 1872 Q16891;Q16891-2;Q16891-4;Q16891-3 IMMT MICOS complex subunit MIC60 yes no 0 0 0 0 By MS/MS By MS/MS 5.33 2.36 1 2 1 2 40.515 40.873 3 3.8301E-19 12018 20211116_3435_TMUAki_TMT10x_P_F7 161.87 141.76 816510 1244200 0 1345100 785030 627700 808050 974100 920400 878110 1053800 760130 1161400 52853 1354400 752360 691500 821920 970040 936170 861560 1012500 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 816510 1244200 0 1345100 785030 627700 808050 974100 920400 878110 1053800 760130 1161400 52853 1354400 752360 691500 821920 970040 936170 861560 1012500 2 2 0 2 2 2 2 2 2 2 2 58470000 0 58470000 21433 1872 19701 111835;111836;111837 135609;135610;135611 135609 3 VVSQYSSLLSPMSVNAVMK 2 Oxidation (M) 2071.033 0.032962972 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 2 0 By MS/MS By MS/MS 2.18 0.575 1 7 3 7 4 68.288 68.033 2;3;4 7.4281E-15 22845 20211116_3429_TMUAki_TMT10x_P_F2 126.34 99.195 38641000 64960000 391910 61651000 43189000 71948000 43538000 55836000 55974000 51707000 53418000 35981000 60602000 3313100 63282000 41437000 72298000 44529000 57460000 56309000 50670000 51610000 16 16 11 16 16 16 16 16 16 16 16 28957000 47133000 316630 45134000 29555000 58254000 33065000 36868000 36051000 34228000 37575000 26963000 43973000 2605500 46382000 28440000 58055000 33448000 38485000 36599000 33537000 36200000 10 10 7 10 10 10 10 10 10 10 10 9684800 17826000 75285 16517000 13634000 13694000 10473000 18968000 19923000 17479000 15844000 9018000 16629000 707630 16901000 12997000 14243000 11081000 18975000 19710000 17132000 15410000 6 6 4 6 6 6 6 6 6 6 6 12739000000 7662600000 5076600000 21434 1147 19702 111838;111839;111840;111841;111842;111843;111844;111845;111846;111847;111848 135612;135613;135614;135615;135616;135617;135618;135619;135620;135621;135622;135623;135624;135625;135626;135627;135628 135619 1528;1529 17 VVSQYSSLLSPMSVNAVMK Oxidation (M) 2055.038 0.03804835 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 1 0 By MS/MS By MS/MS 2.62 0.857 1 2 4 1 5 3 75.517 75.419 3;4 2.8169E-12 26758 20211116_3430_TMUAki_TMT10x_P_F3 125.18 108.87 33282000 59279000 662430 54021000 38249000 53015000 39740000 30639000 28546000 32009000 42163000 30993000 55294000 3263100 55466000 36741000 53568000 39886000 32322000 30014000 31205000 40251000 13 13 8 13 13 13 13 13 13 13 13 19855000 35138000 414370 32414000 20755000 38600000 24070000 18457000 17701000 19008000 25601000 18490000 32777000 1972800 33352000 20005000 38488000 24045000 19799000 18567000 18542000 24451000 7 7 5 7 7 7 7 7 7 7 7 13427000 24141000 248060 21607000 17494000 14416000 15670000 12183000 10845000 13000000 16562000 12503000 22517000 1290300 22114000 16736000 15079000 15841000 12524000 11447000 12663000 15800000 6 6 3 6 6 6 6 6 6 6 6 9743300000 5220100000 4523200000 21435 1147 19702 111849;111850;111851;111852;111853;111854;111855;111856 135629;135630;135631;135632;135633;135634;135635;135636;135637;135638;135639;135640;135641 135631 1528;1529 13 VVSQYSSLLSPMSVNAVMK Unmodified 2039.0431 0.043133728 1147 P50991;P50991-2 CCT4 T-complex protein 1 subunit delta yes no 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 78.21 78.181 3 2.1373E-12 25958 20211116_3431_TMUAki_TMT10x_P_F4 129.11 116.94 12945000 21200000 212210 21530000 16529000 15379000 16503000 11880000 13620000 12821000 16695000 12054000 19783000 1243200 21849000 15856000 15968000 16652000 12283000 14091000 12483000 16010000 4 4 3 4 4 4 4 4 4 4 4 4122600 6490700 13167 6730400 4394900 6462300 5292100 2854600 2746600 3300500 4674100 3838700 6057400 357880 6845200 4237400 6518800 5242300 3097800 2974000 3205100 4449300 1 1 1 1 1 1 1 1 1 1 1 8822300 14709000 199050 14800000 12135000 8916700 11211000 9025100 10873000 9520800 12021000 8215300 13725000 885330 15004000 11619000 9449100 11410000 9185500 11117000 9278100 11560000 3 3 2 3 3 3 3 3 3 3 3 2099100000 856980000 1242100000 21436 1147 19702 111857;111858;111859 135642;135643;135644;135645 135642 4 VVSSIEQK Unmodified 888.49165 0.49164694 1395 P63104 YWHAZ 14-3-3 protein zeta/delta yes yes 0 0 0 0 By MS/MS 4 0 1 1 39.646 39.844 2 0.00044499 10640 20211116_3442_TMUAki_TMT10x_S_F4 151.04 88.571 1650700 2936400 32487 2782200 1893200 1621900 2114700 1329900 1490700 1455800 2166500 1537200 2739400 170520 2831900 1822800 1717300 2114200 1370700 1567800 1416600 2069100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1650700 2936400 32487 2782200 1893200 1621900 2114700 1329900 1490700 1455800 2166500 1537200 2739400 170520 2831900 1822800 1717300 2114200 1370700 1567800 1416600 2069100 2 2 2 2 2 2 2 2 2 2 2 60166000 0 60166000 21437 1395 19703 111860 135646;135647 135646 2 VVSSLQQEIWEEEDLNRK Unmodified 2201.0964 0.096426166 1080 P48681 NES Nestin yes yes 0 0 0 1 By MS/MS 2 0 1 1 66.728 66.512 3 2.0738E-06 21041 20211116_3440_TMUAki_TMT10x_S_F2 99.044 75.715 1989800 3742800 44785 3813600 2327200 1899700 2398700 2155300 1904400 1984800 2505900 1853000 3492700 211430 3856900 2236000 2059100 2414100 2173300 1980400 1945500 2398700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1989800 3742800 44785 3813600 2327200 1899700 2398700 2155300 1904400 1984800 2505900 1853000 3492700 211430 3856900 2236000 2059100 2414100 2173300 1980400 1945500 2398700 1 1 1 1 1 1 1 1 1 1 1 118440000 0 118440000 21438 1080 19704 111861 135648 135648 1 VVSVQLGDGTR Unmodified 1129.6091 0.60913632 2186 Q8N1G0;Q8N1G0-2 ZNF687 Zinc finger protein 687 yes no 0 0 0 0 By MS/MS 5 0 1 1 43.372 43.505 2 0.0010517 10918 20211116_3444_TMUAki_TMT10x_S_F5 84.06 59.166 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21439 2186 19705 111862 135649 135649 1 VVTATLWGEDADKFDGSR Unmodified 1965.9432 0.94321999 828 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 0 0 0 1 By MS/MS 5 0 2 2 64.862 64.999 3 2.9403E-15 20758 20211116_3433_TMUAki_TMT10x_P_F5 131.45 126.58 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21440 828 19706 111863;111864 135650;135651 135650 2 VVTATLWGEDADKFDGSRQPVLAIK Unmodified 2715.4232 0.42318003 828 P27694 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 0 0 0 2 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 71.723 71.851 4 2.7641E-22 23076 20211116_3436_TMUAki_TMT10x_P_F8 142.42 115.94 23429000 40028000 244660 40058000 30364000 32688000 29291000 13979000 12553000 16744000 25703000 21816000 37351000 2247200 40754000 29101000 33335000 29249000 15240000 13970000 16239000 24388000 3 3 2 3 3 3 3 3 3 3 3 14483000 25590000 156860 25048000 18424000 25550000 19653000 8926600 8515600 11262000 16275000 13486000 23876000 1381700 25599000 17705000 25624000 19526000 9984800 9425900 10903000 15459000 2 2 1 2 2 2 2 2 2 2 2 8946100 14439000 87807 15010000 11941000 7137800 9637900 5052000 4037700 5481700 9428700 8330400 13475000 865470 15155000 11397000 7710200 9723200 5254700 4544000 5336000 8928600 1 1 1 1 1 1 1 1 1 1 1 4381900000 2034100000 2347800000 21441 828 19707 111865;111866;111867;111868 135652;135653;135654 135653 3 VVTDTDETELAR Unmodified 1347.6518 0.65178899 504 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 40.358 40.273 2 5.2328E-60 10131 20211116_3428_TMUAki_TMT10x_P_F1 323.8 268.25 2259200 3980600 4886.3 3942300 6760400 3884400 2808600 2274700 3107500 2060200 3611700 2103400 3714200 225340 4023700 6381200 3924500 3064800 2387600 3166200 2021000 3468400 4 4 1 4 4 4 4 4 4 4 4 1453800 2604800 0 2499500 5848800 3217300 1813300 1473000 2011400 1316700 2342300 1353500 2430100 161340 2568100 5505300 3194100 2056400 1581000 2049300 1292400 2249300 2 2 0 2 2 2 2 2 2 2 2 805430 1375800 4886.3 1442800 911570 667100 995290 801770 1096100 743510 1269300 749900 1284000 63998 1455600 875880 730480 1008300 806650 1116900 728550 1219100 2 2 1 2 2 2 2 2 2 2 2 363230000 271260000 91970000 21442 504 19708 111869;111870;111871;111872 135655;135656;135657;135658 135655 4 VVTGVANALAHR Unmodified 1206.6833 0.68330431 53 CON__Q3SX09 yes yes 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 43.594 43.502 3 4.3232E-12 13440 20211116_3439_TMUAki_TMT10x_S_F1 131.17 107.14 + 1223100 2007900 26248 2373500 2426600 2328200 1586000 1873200 2014500 1748600 1982200 1139100 1875000 142720 2394900 2307200 2364400 1665900 1923800 2029600 1712900 1913100 3 3 3 3 3 3 3 3 3 3 3 862750 1422000 19774 1743700 2118100 2033800 1255400 1320700 1433500 1242800 1433400 803450 1328100 107540 1760400 2010500 2038000 1324100 1376400 1450500 1217000 1382700 2 2 2 2 2 2 2 2 2 2 2 360380 585900 6474.6 629830 308440 294450 330540 552510 581040 505800 548770 335600 546870 35184 634410 296690 326450 341880 547330 579010 495920 530380 1 1 1 1 1 1 1 1 1 1 1 405840000 337300000 68537000 21443 53 19709 111873;111874;111875;111876 135659;135660;135661;135662 135661 4 VVTKPGHIINPIKAEDVGYR Unmodified 2205.227 0.22698683 2695 Q9BVJ6;Q9BVJ6-3;Q9BVJ6-2 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 0 0 0 2 By MS/MS 2 0 1 1 46.525 46.233 5 0.0805 14034 20211116_3429_TMUAki_TMT10x_P_F2 35.703 26.172 1981300 3409600 0 3339200 4666000 5716000 3284200 3595000 3144700 2845100 3082800 1844600 3181200 173490 3447000 4437400 5628800 3399200 3739700 3203100 2809600 2975800 1 1 0 1 1 1 1 1 1 1 1 1981300 3409600 0 3339200 4666000 5716000 3284200 3595000 3144700 2845100 3082800 1844600 3181200 173490 3447000 4437400 5628800 3399200 3739700 3203100 2809600 2975800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 355140000 355140000 0 21444 2695 19710 111877 135663 135663 1 VVTLMDMTLITGEPK Oxidation (M) 1662.8572 0.85723044 3405 yes yes 0 0 1 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 2 3 47.405 47.192 4 0.034146 15983 20211116_3441_TMUAki_TMT10x_S_F3 40.941 11.586 + 39755000 56675000 493360 66401000 50155000 41707000 38278000 38601000 36892000 35543000 48117000 37017000 52921000 3661100 66684000 47806000 43942000 39405000 39312000 37990000 34839000 46069000 6 6 4 6 6 6 6 6 6 6 6 13203000 17949000 74293 21625000 23430000 22999000 13862000 14727000 14296000 13369000 15437000 12293000 16762000 1153800 21822000 22220000 23159000 14575000 15350000 14565000 13113000 14856000 2 2 1 2 2 2 2 2 2 2 2 26552000 38726000 419070 44776000 26724000 18708000 24416000 23874000 22596000 22174000 32680000 24725000 36158000 2507300 44862000 25586000 20782000 24831000 23962000 23425000 21726000 31213000 4 4 3 4 4 4 4 4 4 4 4 3181100000 1460500000 1720700000 21445 3405 19711 111878;111879;111880;111881;111882 135664 135664 3323;3324 1 VVTMEVEAR Oxidation (M) 1048.5223 0.52229515 2608 Q99829 CPNE1 Copine-1 yes yes 0 0 1 0 By MS/MS By MS/MS 2.17 1.07 2 2 1 1 3 3 33.044 33.028 2 0.001205 9137 20211116_3430_TMUAki_TMT10x_P_F3 110.67 93.711 2441100 3801300 2953 4229500 4726400 4122500 2765000 2096000 2431300 2037300 3186500 2272800 3548600 219380 4283000 4481600 4160800 2896900 2231600 2514900 1992100 3050500 6 6 1 6 6 6 6 6 6 6 6 1976700 3014000 2953 3400500 4198400 3738300 2285000 1640700 1950800 1611600 2562300 1840400 2813800 184170 3446800 3976800 3740400 2407400 1773100 2020900 1575200 2452800 3 3 1 3 3 3 3 3 3 3 3 464380 787300 0 829050 527990 384120 480050 455370 480520 425600 624170 432350 734790 35213 836170 504780 420360 489460 458510 493920 416890 597670 3 3 0 3 3 3 3 3 3 3 3 178710000 151050000 27658000 21446 2608 19712 111883;111884;111885;111886;111887;111888 135665;135666;135667;135668;135669 135666 2844 5 VVTMEVEAR Unmodified 1032.5274 0.52738052 2608 Q99829 CPNE1 Copine-1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.8 0.748 2 2 1 2 3 41.713 41.533 2 0.00030582 13692 20211116_3441_TMUAki_TMT10x_S_F3 129.42 91.863 8680800 12862000 14148 15432000 10658000 9172800 9440300 6406800 6075200 6364100 10543000 8082300 12011000 706340 15468000 10186000 9668500 9535100 6652300 6486200 6217300 10033000 4 4 2 4 4 4 4 4 4 4 4 2597700 3503100 0 4162200 4635700 4270600 3057100 1888200 1850400 1818900 3043800 2418500 3271200 209430 4201200 4403000 4290400 3146100 2038000 1977600 1779300 2899300 1 1 0 1 1 1 1 1 1 1 1 6083000 9358600 14148 11269000 6022000 4902200 6383200 4518500 4224800 4545200 7499700 5663800 8739800 496910 11266000 5782900 5378100 6389100 4614300 4508600 4438000 7133300 3 3 2 3 3 3 3 3 3 3 3 485450000 149720000 335720000 21447 2608 19712 111889;111890;111891;111892;111893 135670;135671;135672;135673;135674;135675 135674 6 VVTQNICQYR Unmodified 1279.6343 0.63430521 2181 Q8N163;Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 38.823 39.214 2 1.2402E-40 9691 20211116_3436_TMUAki_TMT10x_P_F8 263.55 216.47 795030 1219400 3323.5 1707500 1653200 1176400 819060 1060300 1318900 808540 1324700 740260 1139600 79818 1699500 1564300 1228600 889890 1076400 1320100 800040 1277700 2 2 1 2 2 2 2 2 2 2 2 276280 416900 0 582760 1209100 775390 379410 333750 428440 274880 445200 257240 389630 34759 585670 1138400 768110 429750 359860 434320 270890 428950 1 1 0 1 1 1 1 1 1 1 1 518740 802470 3323.5 1124800 444100 401000 439650 726550 890420 533660 879530 483030 749990 45059 1113900 425910 460470 460140 716500 885730 529140 848790 1 1 1 1 1 1 1 1 1 1 1 93294000 56576000 36718000 21448 2181 19713 111894;111895;111896 135676;135677;135678 135677 3 VVTTNYKPVANHQYNIEYER Unmodified 2437.2026 0.20262257 662 P13984 GTF2F2 General transcription factor IIF subunit 2 yes yes 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 42.698 42.92 4 2.0411E-41 10727 20211116_3447_TMUAki_TMT10x_S_F8 207.07 188.77 2978200 5030600 12287 5275400 6644000 7345200 4169900 5583500 5891300 5088900 4228200 2772500 4695000 238140 5395400 6304400 7315600 4412300 5751000 5859000 4990400 4130300 3 3 2 3 3 3 3 3 3 3 3 2398700 4079400 2259.2 4140400 6092000 6818900 3745700 4546600 4821700 4177400 3213000 2232800 3806700 181130 4259600 5777800 6730300 3955400 4726300 4801100 4095100 3149300 2 2 1 2 2 2 2 2 2 2 2 579540 951210 10028 1135000 551990 526330 424210 1036900 1069500 911470 1015200 539680 888260 57008 1135800 526670 585210 456950 1024700 1057900 895360 981000 1 1 1 1 1 1 1 1 1 1 1 1090200000 959750000 130450000 21449 662 19714 111897;111898;111899 135679;135680;135681 135681 3 VVTTPAFMCETALHYIHDGIGAMVR Oxidation (M) 2804.3448 0.34481183 2 P0DPI2;A0A0B4J2D5;P0DPI2-2;A0A0B4J2D5-2 yes no 0 0 1 0 By MS/MS 1 0 1 1 73.624 73.624 4 0.0075908 23704 20211116_3428_TMUAki_TMT10x_P_F1 43.523 35.235 1679800 2978200 36127 2703500 1907500 3709400 2004000 2384900 2390600 2566100 2286500 1564400 2777900 176130 2792400 1833600 3687000 2039700 2497000 2411400 2498800 2208900 1 1 1 1 1 1 1 1 1 1 1 1679800 2978200 36127 2703500 1907500 3709400 2004000 2384900 2390600 2566100 2286500 1564400 2777900 176130 2792400 1833600 3687000 2039700 2497000 2411400 2498800 2208900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 571940000 571940000 0 21450 2 19715 111900 135682 135682 2;3 1 VVTTPAFMCETALHYIHDGIGAMVR 2 Oxidation (M) 2820.3397 0.33972645 2 P0DPI2;A0A0B4J2D5;P0DPI2-2;A0A0B4J2D5-2 yes no 0 0 2 0 By MS/MS By MS/MS 8 0 2 1 1 63.391 63.479 4 0.0034657 19561 20211116_3436_TMUAki_TMT10x_P_F8 50.426 42.337 6868500 11614000 186830 10434000 8777100 16066000 8691100 12841000 10814000 10819000 10001000 6396600 10833000 770300 10812000 8425100 15947000 8886000 13158000 10879000 10650000 9672700 3 3 3 3 3 3 3 3 3 3 3 4875100 8128000 123870 7270400 6359100 13498000 6362000 8842300 7688100 7694400 6780900 4540100 7581100 540400 7570700 6104900 13262000 6494200 9190900 7731100 7562000 6569400 2 2 2 2 2 2 2 2 2 2 2 1993400 3486300 62966 3164100 2418000 2568400 2329100 3999100 3125500 3125000 3220100 1856500 3251900 229900 3241800 2320100 2685400 2391800 3967600 3148100 3088000 3103400 1 1 1 1 1 1 1 1 1 1 1 1604600000 647100000 957520000 21451 2 19715 111901;111902 135683;135684;135685 135683 2;3 3 VVTVFSVADGYSENNVFYGHHAK Unmodified 2539.2132 0.21318726 307 O75083;O75083-3 WDR1 WD repeat-containing protein 1 yes no 0 0 0 0 By MS/MS 7 0 1 1 62.618 63.289 4 3.7784E-08 20767 20211116_3435_TMUAki_TMT10x_P_F7 99.86 86.931 5383700 8726900 0 7645600 6124900 11687000 5788600 6367900 5248800 6279200 5260400 5012400 8139100 415030 7936600 5861700 11537000 5872500 6740200 5363800 6136200 5074200 1 1 0 1 1 1 1 1 1 1 1 5383700 8726900 0 7645600 6124900 11687000 5788600 6367900 5248800 6279200 5260400 5012400 8139100 415030 7936600 5861700 11537000 5872500 6740200 5363800 6136200 5074200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2229300000 2229300000 0 21452 307 19716 111903 135686 135686 1 VVTVHLEK Unmodified 923.54402 0.54401687 3226 Q9Y266 NUDC Nuclear migration protein nudC yes yes 0 0 0 0 By MS/MS By MS/MS 5 1.22 1 2 2 2 1 4 4 40.231 40.273 3 0.00016621 9699 20211116_3444_TMUAki_TMT10x_S_F5 151.44 71.003 15422000 21429000 135060 26376000 13937000 16636000 13516000 9984800 10299000 10427000 14777000 14360000 20014000 1358300 26412000 13359000 17398000 13632000 10501000 10777000 10165000 14117000 7 7 4 7 7 7 7 7 7 7 7 10299000 13887000 94011 17213000 9777900 12986000 8834000 6323400 6494100 6642600 9494200 9589700 12970000 924420 17262000 9356900 13341000 8937600 6775000 6815500 6474400 9065900 3 3 2 3 3 3 3 3 3 3 3 5123100 7542400 41049 9162600 4159000 3649000 4681700 3661500 3804400 3784100 5283200 4770300 7043900 433900 9150500 4002400 4057700 4694400 3725800 3961200 3690700 5050700 4 4 2 4 4 4 4 4 4 4 4 3110800000 2061700000 1049100000 21453 3226 19717 111904;111905;111906;111907;111908;111909;111910;111911 135687;135688;135689;135690;135691;135692;135693;135694 135693 8 VVTVVTTK Unmodified 845.52222 0.52221879 2049 Q7L014 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 0 0 0 0 By matching By MS/MS 7.67 0.471 1 2 1 2 43.627 43.871 2 0.0012536 11100 20211116_3447_TMUAki_TMT10x_S_F8 125.31 74.683 4878000 7536700 46016 8256300 4859200 4063500 4928200 4970800 5259400 4863800 6247400 4542100 7035200 431200 8309200 4662700 4418700 5005500 5005000 5371100 4754600 5996000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4878000 7536700 46016 8256300 4859200 4063500 4928200 4970800 5259400 4863800 6247400 4542100 7035200 431200 8309200 4662700 4418700 5005500 5005000 5371100 4754600 5996000 3 3 2 3 3 3 3 3 3 3 3 224480000 96044000 128440000 21454 2049 19718 111912;111913;111914 135695;135696;135697 135697 3 VVTVVTTKK Unmodified 973.61718 0.61718181 2049 Q7L014 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 0 0 0 1 By MS/MS 3 0 1 1 40.489 40.197 3 0.056199 13116 20211116_3441_TMUAki_TMT10x_S_F3 50.194 37.969 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21455 2049 19719 111915 135698 135698 1 VVTYGMANLLTGPK Oxidation (M) 1478.7803 0.78030075 2580 Q99536;Q99536-2;Q99536-3 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes no 0 0 1 0 By MS/MS 2 0 1 1 60.575 60.304 2 0.00041092 19802 20211116_3429_TMUAki_TMT10x_P_F2 82.489 52.235 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21456 2580 19720 111916 135699 135699 2817 1 VVTYGMANLLTGPK Unmodified 1462.7854 0.78538612 2580 Q99536;Q99536-2;Q99536-3 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 74.435 74.261 3 1.8452E-06 26990 20211116_3441_TMUAki_TMT10x_S_F3 110.51 87.274 10324000 17163000 244310 17942000 12124000 9063000 12018000 5886700 4584400 6390700 11347000 9614400 16018000 1085000 18116000 11636000 9709100 11966000 6160600 5229100 6220700 10737000 4 4 3 4 4 4 4 4 4 4 4 1736900 2926300 48604 2923300 2071200 2929100 2259100 1329800 1145600 1560700 2021100 1617600 2730500 193980 2982600 1993600 2947600 2247300 1439700 1245300 1514800 1922600 1 1 1 1 1 1 1 1 1 1 1 8587100 14236000 195710 15018000 10053000 6134000 9758600 4556900 3438800 4830000 9325900 7996700 13287000 891060 15133000 9642500 6761500 9718300 4720900 3983800 4705900 8814100 3 3 2 3 3 3 3 3 3 3 3 681480000 154320000 527160000 21457 2580 19720 111917;111918;111919 135700;135701;135702;135703 135701 4 VVTYGMANLLTGPKR Oxidation (M) 1634.8814 0.88141177 2580 Q99536;Q99536-2;Q99536-3 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes no 0 0 1 1 By MS/MS 4 0 1 1 49.733 49.865 3 0.00042461 14750 20211116_3442_TMUAki_TMT10x_S_F4 76.156 61.595 1775200 2887400 0 3015200 2101500 1789700 1297200 3525500 3172600 2953500 2996300 1652800 2694700 140180 3048700 1994000 1937800 1416000 3479800 3139300 2908100 2895900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1775200 2887400 0 3015200 2101500 1789700 1297200 3525500 3172600 2953500 2996300 1652800 2694700 140180 3048700 1994000 1937800 1416000 3479800 3139300 2908100 2895900 1 1 0 1 1 1 1 1 1 1 1 234760000 0 234760000 21458 2580 19721 111920 135704 135704 2817 1 VVVAENFDEIVNNENK Unmodified 1831.8952 0.89520716 868 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 By MS/MS By MS/MS 2.87 1.14 3 16 19 4 3 2 37 10 64.536 64.44 2;3 1.2014E-107 24687 20211116_3441_TMUAki_TMT10x_S_F3 364.2 339.34 129850000 200070000 1538000 235560000 121110000 135200000 120700000 77796000 95164000 94380000 136630000 120910000 186820000 10450000 236300000 116170000 142630000 121660000 82491000 99402000 91493000 130520000 46 46 26 46 46 46 46 46 46 46 46 58258000 87501000 460620 101750000 58239000 80801000 54983000 34627000 42990000 42308000 60625000 54246000 81701000 4975900 102480000 55771000 82569000 55571000 37766000 44886000 41004000 57937000 35 35 19 35 35 35 35 35 35 35 35 71593000 112570000 1077400 133810000 62872000 54398000 65717000 43169000 52174000 52072000 76009000 66666000 105120000 5473900 133820000 60403000 60063000 66092000 44725000 54516000 50490000 72586000 11 11 7 11 11 11 11 11 11 11 11 25082000000 13261000000 11821000000 21459 868 19722 111921;111922;111923;111924;111925;111926;111927;111928;111929;111930;111931;111932;111933;111934;111935;111936;111937;111938;111939;111940;111941;111942;111943;111944;111945;111946;111947;111948;111949;111950;111951;111952;111953;111954;111955;111956;111957;111958;111959;111960;111961;111962;111963;111964;111965;111966;111967 135705;135706;135707;135708;135709;135710;135711;135712;135713;135714;135715;135716;135717;135718;135719;135720;135721;135722;135723;135724;135725;135726;135727;135728;135729;135730;135731;135732;135733;135734;135735;135736;135737;135738;135739;135740;135741;135742;135743;135744;135745;135746;135747;135748;135749;135750;135751;135752;135753;135754;135755;135756;135757;135758;135759;135760;135761;135762;135763 135756 59 VVVFIKPTCPYCR Unmodified 1637.8422 0.8421895 943 P35754 GLRX Glutaredoxin-1 yes yes 0 0 0 1 By MS/MS 6 0 1 1 55.837 55.909 3 0.083563 16263 20211116_3445_TMUAki_TMT10x_S_F6 36.445 23.032 5085200 8940000 0 10272000 5310300 4468300 4453700 6429200 6357000 6163600 7717700 4734300 8347000 368080 10298000 5066600 4954000 4621300 6429900 6432100 6030600 7402900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5085200 8940000 0 10272000 5310300 4468300 4453700 6429200 6357000 6163600 7717700 4734300 8347000 368080 10298000 5066600 4954000 4621300 6429900 6432100 6030600 7402900 1 1 0 1 1 1 1 1 1 1 1 637840000 0 637840000 21460 943 19723 111968 135764 135764 1 VVVHPLVLLSVVDHFNR Unmodified 1942.1153 0.11525153 1162 P51665 PSMD7 26S proteasome non-ATPase regulatory subunit 7 yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 3 3 2 4 76.189 76.176 3;4 2.6909E-43 24148 20211116_3434_TMUAki_TMT10x_P_F6 229.9 223.14 10709000 21969000 4411.7 18998000 14511000 17217000 15577000 12922000 11927000 14235000 16804000 9969200 20488000 669130 19565000 13923000 17552000 15632000 13394000 12466000 13848000 16060000 6 6 2 6 6 6 6 6 6 6 6 1255600 1931100 766.07 1936800 1231700 2383300 1451500 1247100 1205200 1185400 1499800 1168900 1801900 78927 1982100 1184900 2374900 1453200 1323400 1247300 1160300 1437700 2 2 1 2 2 2 2 2 2 2 2 9453600 20038000 3645.6 17062000 13279000 14833000 14126000 11675000 10722000 13049000 15304000 8800300 18686000 590210 17583000 12738000 15178000 14179000 12070000 11219000 12688000 14622000 4 4 1 4 4 4 4 4 4 4 4 4531400000 1956500000 2574800000 21461 1162 19724 111969;111970;111971;111972;111973;111974 135765;135766;135767;135768;135769;135770 135766 6 VVVHQETEIADE Unmodified 1367.6569 0.65687437 617 P11171;P11171-2;P11171-4;P11171-5;P11171-3;P11171-6 EPB41 Protein 4.1 yes no 0 0 0 0 By MS/MS By MS/MS 1.6 0.49 2 3 2 3 38.194 38.127 2 1.6348E-05 11244 20211116_3439_TMUAki_TMT10x_S_F1 102.61 80.523 630240 1009000 13520 1306000 1300200 1214600 731980 800670 1002700 669860 1019700 586910 942580 74234 1309900 1233200 1233700 780570 831040 1008800 659610 983140 4 4 4 4 4 4 4 4 4 4 4 360870 575420 9895.1 747130 1057100 989300 508290 445750 593040 399200 588980 336080 537570 48892 753690 1000400 980680 546900 479250 599460 391800 568300 2 2 2 2 2 2 2 2 2 2 2 269370 433550 3624.5 558820 243070 225260 223690 354920 409680 270660 430720 250840 405010 25342 556260 232800 252970 233670 351790 409390 267820 414850 2 2 2 2 2 2 2 2 2 2 2 309030000 210610000 98417000 21462 617 19725 111975;111976;111977;111978;111979 135771;135772;135773;135774;135775 135773 5 VVVLGLLPR Unmodified 964.64334 0.64333698 1770 Q15102 PAFAH1B3 Platelet-activating factor acetylhydrolase IB subunit gamma yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 1.12 2 2 2 2 4 4 71.304 71.242 2 2.8995E-05 23603 20211116_3442_TMUAki_TMT10x_S_F4 133.47 123.48 21198000 36192000 167070 33920000 28855000 37218000 25024000 27158000 24691000 24786000 27802000 19738000 33763000 1924200 34814000 27575000 37486000 25573000 28049000 25243000 24305000 26724000 6 6 3 6 6 6 6 6 6 6 6 12423000 20235000 88011 19076000 16081000 28579000 16152000 15214000 13915000 14118000 15334000 11567000 18877000 1075800 19684000 15421000 28227000 16311000 16110000 14305000 13834000 14749000 3 3 1 3 3 3 3 3 3 3 3 8775000 15958000 79057 14844000 12774000 8639700 8872000 11944000 10775000 10668000 12468000 8171000 14886000 848460 15129000 12154000 9258500 9262200 11939000 10939000 10472000 11975000 3 3 2 3 3 3 3 3 3 3 3 4696200000 2905900000 1790300000 21463 1770 19726 111980;111981;111982;111983;111984;111985;111986;111987 135776;135777;135778;135779;135780;135781;135782;135783 135781 8 VVVLMGSTSDLGHCEK Oxidation (M) 1746.8281 0.82805557 767 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 1 0 By MS/MS By MS/MS 6.17 1.07 2 2 1 1 2 4 45.341 45.505 3 1.469E-07 14031 20211116_3446_TMUAki_TMT10x_S_F7 110.38 97.617 9159600 15400000 165020 17676000 21512000 24217000 12232000 19975000 19931000 15557000 16513000 8529700 14379000 1086200 17970000 20404000 24172000 13131000 20391000 19818000 15376000 16035000 6 6 6 6 6 6 6 6 6 6 6 5433500 8659300 111280 10219000 18325000 20616000 9604900 11729000 11692000 8927400 9233100 5059900 8085800 734740 10470000 17358000 20161000 10263000 12290000 11716000 8834400 8982900 3 3 3 3 3 3 3 3 3 3 3 3726100 6741100 53738 7457200 3187400 3601900 2626700 8246700 8238700 6629400 7279500 3469800 6292800 351460 7499300 3045400 4011600 2867500 8101800 8101900 6541200 7052000 3 3 3 3 3 3 3 3 3 3 3 1189300000 664820000 524470000 21464 767 19727 111988;111989;111990;111991;111992;111993 135784;135785;135786;135787;135788;135789 135789 892 6 VVVLMGSTSDLGHCEK Unmodified 1730.8331 0.83314095 767 P22234;P22234-2 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 0 0 0 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 2 2 53.856 54.108 3 3.4101E-21 16908 20211116_3435_TMUAki_TMT10x_P_F7 162.29 143.22 10815000 17662000 126510 19054000 17435000 23486000 12225000 13522000 13043000 12438000 14434000 10070000 16486000 1090900 19407000 16593000 23429000 12698000 14219000 13283000 12192000 13881000 4 4 3 4 4 4 4 4 4 4 4 8462900 13394000 106680 14610000 15199000 21145000 9828200 10834000 10271000 9867300 11387000 7880500 12502000 879070 14917000 14444000 20906000 10264000 11507000 10470000 9676800 10950000 3 3 2 3 3 3 3 3 3 3 3 2351900 4268300 19828 4444200 2235200 2341400 2396500 2688000 2772000 2570800 3047000 2190000 3983400 211830 4490000 2148400 2522800 2434000 2712000 2813300 2515700 2930800 1 1 1 1 1 1 1 1 1 1 1 1462800000 1077500000 385300000 21465 767 19727 111994;111995;111996;111997 135790;135791;135792;135793;135794 135790 5 VVVNFAPTIQEIK Unmodified 1456.829 0.8289655 2074 Q7Z3B1;Q7Z3B1-2 NEGR1 Neuronal growth regulator 1 yes no 0 0 0 0 By MS/MS 8 0 1 1 72.906 72.748 3 1.0209E-05 22895 20211116_3447_TMUAki_TMT10x_S_F8 89.629 64.838 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21466 2074 19728 111998 135795 135795 1 VVVPATEEEAEVDEFPTDGEMSAQEEDRRK Oxidation (M) 3407.5311 0.5310881 100 O00541 PES1 Pescadillo homolog yes yes 0 0 1 2 By MS/MS 1.5 0.5 2 2 4 52.041 51.914 4;5 4.0063E-15 14846 20211116_3428_TMUAki_TMT10x_P_F1 113.13 108.3 3377800 6204200 49436 6392300 4930700 8669600 4307400 5110200 5773800 4790700 4754300 3145200 5789900 316100 6542000 4713000 8611500 4447200 5365800 5773500 4692000 4617900 4 4 2 4 4 4 4 4 4 4 4 3377800 6204200 49436 6392300 4930700 8669600 4307400 5110200 5773800 4790700 4754300 3145200 5789900 316100 6542000 4713000 8611500 4447200 5365800 5773500 4692000 4617900 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3128500000 3128500000 0 21467 100 19729 111999;112000;112001;112002 135796;135797;135798;135799 135797 76 4 VVVPATEEEAEVDEFPTDGEMSAQEEDRRK Unmodified 3391.5362 0.53617347 100 O00541 PES1 Pescadillo homolog yes yes 0 0 0 2 By MS/MS 1 0 1 1 55.477 55.477 4 9.6044E-27 16259 20211116_3428_TMUAki_TMT10x_P_F1 148.95 141.16 1295500 2130900 0 2490200 1504100 2042600 1670300 916030 762220 972200 1393500 1206200 1989700 106950 2508400 1446200 2083100 1657500 989890 837570 947190 1324700 1 1 0 1 1 1 1 1 1 1 1 1295500 2130900 0 2490200 1504100 2042600 1670300 916030 762220 972200 1393500 1206200 1989700 106950 2508400 1446200 2083100 1657500 989890 837570 947190 1324700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 743660000 743660000 0 21468 100 19729 112003 135800 135800 1 VVVPIYCTSFLAVEEDKQQK Unmodified 2352.2035 0.20353377 2149 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein yes yes 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 74.753 74.807 3 2.6403E-11 25546 20211116_3435_TMUAki_TMT10x_P_F7 120.24 107.81 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21469 2149 19730 112004;112005 135801;135802 135801 2 VVVPPLPGK Unmodified 904.57459 0.57458871 269 O60493;O60493-2;O60493-4 SNX3 Sorting nexin-3 yes no 0 0 0 0 By MS/MS 2 0 1 1 57.848 57.626 2 0.0025102 17438 20211116_3440_TMUAki_TMT10x_S_F2 84.244 77.879 2569600 4997300 18557 5044800 3045400 2949100 2877100 3575100 3726300 3833600 3989100 2392700 4663200 237000 5111800 2917000 3147700 2953500 3611100 3763000 3733500 3840000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2569600 4997300 18557 5044800 3045400 2949100 2877100 3575100 3726300 3833600 3989100 2392700 4663200 237000 5111800 2917000 3147700 2953500 3611100 3763000 3733500 3840000 1 1 1 1 1 1 1 1 1 1 1 237410000 0 237410000 21470 269 19731 112006 135803 135803 1 VVVQVLAEEPEAVLK Unmodified 1621.9291 0.92907347 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 3.94 1.3 3 3 4 4 2 8 8 77.629 77.598 2;3 1.0014E-37 25711 20211116_3431_TMUAki_TMT10x_P_F4 250.51 219.94 82925000 140250000 419310 131410000 86504000 113590000 91692000 73300000 72370000 79890000 94626000 77211000 130840000 6885800 134420000 83072000 115910000 92138000 76757000 75260000 77753000 90593000 15 15 7 15 15 15 15 15 15 15 15 46184000 76703000 296450 71815000 42786000 75296000 50636000 39918000 40569000 43807000 51133000 43003000 71554000 3859800 73660000 41228000 75697000 50640000 42488000 42087000 42624000 48999000 8 8 3 8 8 8 8 8 8 8 8 36741000 63548000 122860 59594000 43717000 38293000 41056000 33382000 31802000 36083000 43494000 34209000 59283000 3026000 60756000 41844000 40214000 41498000 34269000 33173000 35129000 41595000 7 7 4 7 7 7 7 7 7 7 7 18720000000 11274000000 7446600000 21471 1092 19732 112007;112008;112009;112010;112011;112012;112013;112014;112015;112016;112017;112018;112019;112020;112021;112022 135804;135805;135806;135807;135808;135809;135810;135811;135812;135813;135814;135815;135816;135817;135818;135819 135808 16 VVVSGGR Unmodified 672.39187 0.39187332 659 P13804;P13804-2 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 2.75 1.79 2 1 1 3 1 27.508 27.527 2 0.007587 5904 20211116_3433_TMUAki_TMT10x_P_F5 101.21 101.21 862770 1425500 4336 1182200 958830 1425300 969230 709540 731330 783010 1112200 803310 1329200 71475 1226900 919540 1420900 975230 759730 767930 761700 1061100 4 4 2 4 4 4 4 4 4 4 4 813410 1338000 1720.5 1087400 895860 1372300 889830 669490 696440 746350 1054300 757340 1247600 64755 1131300 858590 1364600 896920 718460 729670 725760 1006000 3 3 1 3 3 3 3 3 3 3 3 49360 87481 2615.5 94805 62973 52999 79403 40051 34893 36661 57945 45978 81656 6720.5 95574 60953 56280 78304 41273 38263 35945 55184 1 1 1 1 1 1 1 1 1 1 1 21030000 20227000 802930 21472 659 19733 112023;112024;112025;112026 135820;135821;135822 135822 3 VVVSGLPPSGSWQDLK Unmodified 1667.8883 0.88827129 1543 Q07955;Q07955-3;Q07955-2 SRSF1 Serine/arginine-rich splicing factor 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.67 3.3 4 2 3 4 5 71.254 71.176 2;3 2.5086E-30 22660 20211116_3436_TMUAki_TMT10x_P_F8 181.31 149.88 55894000 95369000 1355700 95392000 63365000 71324000 68498000 47494000 42305000 50291000 64408000 52053000 88989000 6002200 96954000 60968000 73609000 68401000 49575000 44969000 49002000 61447000 11 11 11 11 11 11 11 11 11 11 11 23127000 37751000 493410 39800000 26713000 40028000 29891000 19477000 17003000 21461000 26537000 21537000 35233000 2427400 40461000 25723000 40302000 29754000 20900000 18200000 20878000 25304000 4 4 4 4 4 4 4 4 4 4 4 32768000 57618000 862340 55592000 36652000 31296000 38607000 28017000 25302000 28831000 37870000 30517000 53756000 3574700 56493000 35245000 33307000 38647000 28676000 26768000 28124000 36143000 7 7 7 7 7 7 7 7 7 7 7 4611000000 1640600000 2970400000 21473 1543 19734 112027;112028;112029;112030;112031;112032;112033;112034;112035 135823;135824;135825;135826;135827;135828;135829;135830;135831;135832;135833;135834;135835;135836;135837 135828 15 VVVSPTK Unmodified 728.44324 0.44324019 729 P19338 NCL Nucleolin yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.816 1 1 1 2 1 35.244 35.564 2 0.060366 7596 20211116_3434_TMUAki_TMT10x_P_F6 63.48 16.413 553330 967880 8660.9 910090 1005100 1050600 719090 554830 610050 609250 754530 515270 902920 60274 934620 957050 1050400 740980 590760 630520 592780 723400 3 3 3 3 3 3 3 3 3 3 3 433600 742010 7039.8 682830 842970 931450 552060 421350 463950 469510 556260 403780 692160 48243 704500 801390 922100 572460 455580 479120 456570 533740 2 2 2 2 2 2 2 2 2 2 2 119730 225860 1621.1 227260 162110 119110 167030 133480 146100 139730 198270 111490 210760 12031 230120 155660 128340 168520 135180 151400 136210 189650 1 1 1 1 1 1 1 1 1 1 1 29583000 20320000 9262600 21474 729 19735 112036;112037;112038 135838;135839;135840 135838 3 VVVTMEHSAK Unmodified 1099.5696 0.56957969 1248 P55809;P55809-2 OXCT1 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 35.625 35.692 3 4.999E-07 7729 20211116_3444_TMUAki_TMT10x_S_F5 155.15 131.3 1388700 2114400 6281.7 2512100 1929700 1680900 1506100 1055200 1011000 977920 1551700 1292900 1974400 114210 2522200 1839100 1749600 1534600 1102100 1069400 958270 1480100 2 2 1 2 2 2 2 2 2 2 2 867060 1302000 0 1567700 1431900 1344000 1002500 690800 691570 633760 988170 807210 1215900 65446 1577200 1361200 1368300 1029700 733610 727690 621310 944070 1 1 0 1 1 1 1 1 1 1 1 521590 812390 6281.7 944350 497830 336910 503650 364380 319430 344160 563490 485700 758540 48765 944990 477870 381310 504870 368490 341690 336960 536020 1 1 1 1 1 1 1 1 1 1 1 101720000 70146000 31578000 21475 1248 19736 112039;112040 135841;135842 135842 2 VVVVDDLLATGGTMNAACELLGR Oxidation (M) 2389.1981 0.19813082 541 P07741 APRT Adenine phosphoribosyltransferase yes yes 0 0 1 0 By MS/MS By MS/MS 4.75 0.829 2 1 1 1 3 79.313 79.319 3 2.3878E-07 26421 20211116_3431_TMUAki_TMT10x_P_F4 83.905 68.269 4830600 7790700 24252 7773300 6054100 6233500 6221300 4051900 3856800 4707200 6061000 4497900 7269400 438830 7908300 5810500 6396200 6228600 4249400 4105300 4570300 5778600 3 3 2 3 3 3 3 3 3 3 3 1416400 2209900 0 2306000 1405200 2660300 1781900 1337300 1324900 1671800 1879700 1318800 2062400 115880 2351000 1356800 2658600 1773600 1436500 1387500 1619000 1796100 1 1 0 1 1 1 1 1 1 1 1 3414200 5580800 24252 5467300 4648800 3573100 4439400 2714600 2531900 3035400 4181300 3179100 5207000 322950 5557300 4453700 3737600 4455000 2812900 2717800 2951300 3982400 2 2 2 2 2 2 2 2 2 2 2 3947400000 1503100000 2444300000 21476 541 19737 112041;112042;112043;112044 135843;135844;135845;135846 135843 474 4 VVVVDDLLATGGTMNAACELLGR Unmodified 2373.2032 0.2032162 541 P07741 APRT Adenine phosphoribosyltransferase yes yes 0 0 0 0 By MS/MS 7 0 1 1 80.653 80.687 3 1.4439E-11 28538 20211116_3446_TMUAki_TMT10x_S_F7 116.45 111.2 2057300 3598500 101710 3350900 4038400 1990500 2741500 1629500 1399800 1890500 2658400 1916300 3356900 293100 3415600 3845800 2103600 2807100 1682800 1527500 1835600 2525500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2057300 3598500 101710 3350900 4038400 1990500 2741500 1629500 1399800 1890500 2658400 1916300 3356900 293100 3415600 3845800 2103600 2807100 1682800 1527500 1835600 2525500 1 1 1 1 1 1 1 1 1 1 1 1105500000 0 1105500000 21477 541 19737 112045 135847 135847 1 VVVVDSRPWLEGR Unmodified 1510.8256 0.82561145 3127;3128 Q9UI10;Q9UI10-2;Q9UI10-3 EIF2B4 Translation initiation factor eIF-2B subunit delta no no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 53.654 53.664 3 0.00088925 15643 20211116_3436_TMUAki_TMT10x_P_F8 69.345 45.969 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21478 3127;3128 19738 112046;112047 135848;135849 135848 2 VVWVEESDKR Unmodified 1245.6354 0.63535107 104 O00571;O00571-2 DDX3X ATP-dependent RNA helicase DDX3X yes no 0 0 0 1 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 43.528 43.652 3 1.647E-05 11839 20211116_3431_TMUAki_TMT10x_P_F4 136.49 105.62 7371400 11557000 26579 12783000 12729000 9713900 8854100 7177800 6912100 6790000 10059000 6863300 10789000 662830 12908000 12106000 10028000 9123600 7414300 7228500 6647500 9606400 3 3 1 3 3 3 3 3 3 3 3 3913300 5894800 26579 7198500 9416700 7137600 5808900 3169400 3210400 3301000 5263000 3643700 5505400 397340 7250600 8938200 7185900 6000400 3426600 3452600 3218500 5013400 2 2 1 2 2 2 2 2 2 2 2 3458100 5662400 0 5584200 3311900 2576300 3045200 4008400 3701700 3489000 4796400 3219700 5283400 265490 5657300 3167600 2842300 3123100 3987600 3776000 3429000 4593000 1 1 0 1 1 1 1 1 1 1 1 572820000 289090000 283730000 21479 104 19739 112048;112049;112050;112051 135850;135851;135852 135851 3 VVYENAYGQFIGPHR Unmodified 1748.8635 0.86345352 1871 Q16881;Q16881-3;Q16881-4;Q16881-5;Q16881-2;Q16881-6;Q16881-7 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 0 0 0 0 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 52.038 52.276 3 9.175E-44 15050 20211116_3436_TMUAki_TMT10x_P_F8 260.67 243.73 15563000 25692000 217590 26896000 20351000 24477000 16959000 26096000 24876000 23775000 24716000 14492000 23978000 1455800 27317000 19434000 25121000 17625000 26382000 24955000 23316000 23847000 8 8 5 8 8 8 8 8 8 8 8 5519900 9353300 126710 9965400 9720600 14668000 8029600 9225500 8715400 8403600 8623100 5140500 8729900 634570 10193000 9285800 14531000 8254400 9629900 8833100 8241300 8321300 3 3 3 3 3 3 3 3 3 3 3 10043000 16339000 90875 16931000 10630000 9808400 8929500 16871000 16161000 15371000 16093000 9351100 15248000 821220 17124000 10148000 10590000 9370300 16752000 16122000 15074000 15526000 5 5 2 5 5 5 5 5 5 5 5 6386700000 3720000000 2666700000 21480 1871 19740 112052;112053;112054;112055;112056;112057 135853;135854;135855;135856;135857;135858;135859;135860 135855 8 VVYGGGAAEISCALAVSQEADK Unmodified 2194.0576 0.057597819 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 0 By MS/MS 6 0 1 1 74.011 73.937 3 2.5858E-17 23655 20211116_3445_TMUAki_TMT10x_S_F6 127.5 112.25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21481 1079 19741 112058 135861 135861 1 VVYGGGAAEISCALAVSQEADKCPTLEQYAMR Oxidation (M) 3459.6109 0.61087552 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 1 1 By MS/MS By MS/MS 6.36 0.881 2 4 4 1 6 5 78.248 78.26 3;4 1.1833E-15 25411 20211116_3433_TMUAki_TMT10x_P_F5 116.72 106.84 38122000 65968000 475460 57818000 41003000 66992000 51566000 42412000 44264000 50312000 51122000 35497000 61525000 3106500 59697000 39590000 67129000 51527000 44598000 45594000 48812000 49103000 16 16 8 16 16 16 16 16 16 16 16 17505000 29559000 291830 26992000 17695000 35946000 20977000 18887000 19509000 21853000 22175000 16300000 27572000 1380700 27852000 17060000 35683000 21061000 20152000 20006000 21220000 21309000 7 7 5 7 7 7 7 7 7 7 7 20617000 36409000 183630 30826000 23308000 31047000 30590000 23525000 24755000 28459000 28947000 19196000 33953000 1725900 31845000 22530000 31446000 30467000 24446000 25588000 27591000 27794000 9 9 3 9 9 9 9 9 9 9 9 24326000000 13183000000 11143000000 21482 1079 19742 112059;112060;112061;112062;112063;112064;112065;112066;112067;112068;112069 135862;135863;135864;135865;135866;135867;135868;135869;135870;135871;135872;135873;135874;135875;135876;135877 135862 1409 16 VVYIFGPPVK Unmodified 1117.6536 0.65356732 1128 P49915;P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 72.78 72.646 2 1.3557E-08 23652 20211116_3431_TMUAki_TMT10x_P_F4 127.84 99.675 6934300 11417000 210760 12043000 7994600 6949200 7548900 7515800 7852200 8366900 9203300 6458100 10655000 786170 12165000 7667100 7406300 7689900 7638400 8022900 8136500 8836200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6934300 11417000 210760 12043000 7994600 6949200 7548900 7515800 7852200 8366900 9203300 6458100 10655000 786170 12165000 7667100 7406300 7689900 7638400 8022900 8136500 8836200 2 2 2 2 2 2 2 2 2 2 2 336540000 0 336540000 21483 1128 19743 112070;112071 135878;135879;135880 135878 3 VVYIFGPPVKEPPTDVTPTFLTTGVLSTLR Unmodified 3243.7795 0.7795027 1128 P49915;P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 0 1 By MS/MS By MS/MS 5.17 0.687 1 3 2 3 3 80.554 80.557 3;4 6.7334E-27 27160 20211116_3433_TMUAki_TMT10x_P_F5 148.19 137.29 8671000 14693000 19444 12289000 10072000 11662000 11112000 7771000 7238300 8282900 9837800 8073000 13701000 439730 12697000 9678500 11832000 11097000 8112800 7625400 8068400 9409700 6 6 3 6 6 6 6 6 6 6 6 3677000 5819000 19444 5161100 3661800 7015300 4427800 3157500 3076100 3319800 4252700 3423800 5427300 322760 5339300 3531500 6945600 4409400 3409900 3230300 3235600 4066000 3 3 3 3 3 3 3 3 3 3 3 4994000 8873700 0 7127700 6409800 4647000 6683800 4613500 4162100 4963100 5585000 4649100 8273500 116970 7357700 6146900 4886400 6687300 4702900 4395100 4832800 5343600 3 3 0 3 3 3 3 3 3 3 3 7125500000 2718500000 4407000000 21484 1128 19744 112072;112073;112074;112075;112076;112077 135881;135882;135883;135884;135885;135886;135887 135881 7 VWAHYEEQPVEEVMPVLEEK Unmodified 2440.1621 0.16206289 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 74.63 74.538 3;4 2.1957E-05 23965 20211116_3428_TMUAki_TMT10x_P_F1 81.356 66.742 4191900 6450800 326310 7181100 4461500 4749800 5317100 3863300 3441100 3790500 5425700 3905500 6022000 655420 7238000 4319200 4968900 5290600 3970500 3653200 3705000 5172500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4191900 6450800 326310 7181100 4461500 4749800 5317100 3863300 3441100 3790500 5425700 3905500 6022000 655420 7238000 4319200 4968900 5290600 3970500 3653200 3705000 5172500 1 1 1 1 1 1 1 1 1 1 1 217080000 0 217080000 21485 2048 19745 112078;112079 135888;135889 135888 2 VWAHYEEQPVEEVMPVLEEK Oxidation (M) 2456.157 0.15697751 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 1 0 By MS/MS 2 0 1 1 64.399 64.102 3 1.1657E-07 21362 20211116_3429_TMUAki_TMT10x_P_F2 96.544 77.154 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21486 2048 19745 112080 135890 135890 2561 1 VWDAVSGDELMTLAHK Oxidation (M) 1786.856 0.85598488 3284 Q9Y3F4;Q9Y3F4-2 STRAP Serine-threonine kinase receptor-associated protein yes no 0 0 1 0 By MS/MS By MS/MS 5.33 1.15 3 2 2 2 5 4 68.387 68.449 3 1.6543E-05 22900 20211116_3435_TMUAki_TMT10x_P_F7 93.823 79.565 40634000 65407000 426960 62011000 48732000 61958000 46524000 34813000 34360000 42005000 49931000 37833000 61019000 3332300 63501000 46661000 62512000 46930000 36981000 36040000 40728000 47684000 8 8 5 8 8 8 8 8 8 8 8 23994000 37614000 317430 33643000 29501000 45737000 30325000 22664000 20279000 24392000 28890000 22342000 35083000 2202700 34783000 28316000 45329000 30405000 24260000 21376000 23751000 27602000 5 5 3 5 5 5 5 5 5 5 5 16640000 27793000 109530 28368000 19231000 16221000 16199000 12149000 14081000 17613000 21041000 15491000 25936000 1129700 28718000 18345000 17183000 16525000 12722000 14664000 16977000 20082000 3 3 2 3 3 3 3 3 3 3 3 4359800000 2661200000 1698500000 21487 3284 19746 112081;112082;112083;112084;112085;112086;112087;112088;112089 135891;135892;135893;135894;135895;135896;135897;135898;135899;135900 135895 3247 10 VWDAVSGDELMTLAHK Unmodified 1770.8611 0.86107026 3284 Q9Y3F4;Q9Y3F4-2 STRAP Serine-threonine kinase receptor-associated protein yes no 0 0 0 0 By MS/MS By MS/MS 5.33 1.41 1 2 2 1 3 4 5 75.705 75.673 3 1.8338E-21 23981 20211116_3444_TMUAki_TMT10x_S_F5 170.42 142.77 23486000 37406000 224800 39633000 26054000 27336000 28671000 14640000 12624000 15536000 25029000 21869000 34912000 2178100 40091000 25060000 28321000 28449000 15552000 13986000 15136000 23761000 8 8 5 8 8 8 8 8 8 8 8 15736000 23669000 158540 25850000 16718000 21408000 20045000 9569300 8010400 9967800 16025000 14653000 22094000 1461300 26151000 16123000 21817000 19786000 10339000 8960200 9718700 15211000 5 5 4 5 5 5 5 5 5 5 5 7749600 13737000 66251 13783000 9335700 5927600 8626800 5070500 4614100 5567800 9004400 7216100 12818000 716810 13940000 8937000 6503900 8663400 5213500 5025400 5417300 8550300 3 3 1 3 3 3 3 3 3 3 3 3286800000 2184000000 1102800000 21488 3284 19746 112090;112091;112092;112093;112094;112095;112096;112097;112098 135901;135902;135903;135904;135905;135906;135907;135908;135909;135910;135911 135909 11 VWDLFPEADKVR Unmodified 1473.7616 0.76161421 2588 Q99613;Q99613-2;B5ME19 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 0 0 0 1 By MS/MS By MS/MS 7 0 3 1 2 70.76 71.054 3 0.00079886 23992 20211116_3435_TMUAki_TMT10x_P_F7 77.644 56.981 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21489 2588 19747 112099;112100;112101 135912;135913;135914 135912 3 VWDPDNPLTDR Unmodified 1326.6204 0.62042929 384 O94776;O94776-2 MTA2 Metastasis-associated protein MTA2 yes no 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 2 3 59.547 59.484 2 2.2455E-11 20982 20211116_3441_TMUAki_TMT10x_S_F3 135.8 96.248 6111200 9615400 6168.6 10015000 8191200 10544000 7902400 5419300 5425300 5356200 7386400 5689700 8973700 475690 10197000 7842900 10594000 7954100 5766800 5697300 5233800 7064700 2 2 1 2 2 2 2 2 2 2 2 6111200 9615400 6168.6 10015000 8191200 10544000 7902400 5419300 5425300 5356200 7386400 5689700 8973700 475690 10197000 7842900 10594000 7954100 5766800 5697300 5233800 7064700 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 822360000 822360000 0 21490 384 19748 112102;112103;112104;112105;112106 135915;135916;135917;135918;135919 135918 5 VWDVRPFAPK Unmodified 1213.6608 0.66077796 2436 Q96DI7;Q96DI7-2 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes no 0 0 0 1 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 58.04 57.744 3 0.0018654 19236 20211116_3430_TMUAki_TMT10x_P_F3 79.659 61.85 17023000 26680000 78857 31529000 21268000 17583000 17655000 12392000 10493000 12459000 20589000 15850000 24914000 1446900 31614000 20300000 18656000 17875000 12864000 11346000 12165000 19549000 3 3 1 3 3 3 3 3 3 3 3 5793000 8890100 78857 11020000 12098000 11249000 9068500 3945300 3153800 4106000 7025100 5394500 8303400 642080 11095000 11529000 11281000 9173900 4384700 3604700 4003600 6657000 1 1 1 1 1 1 1 1 1 1 1 11230000 17790000 0 20509000 9169800 6333700 8586300 8447000 7339000 8352800 13564000 10455000 16610000 804860 20519000 8771400 7374200 8701300 8478800 7741600 8161700 12892000 2 2 0 2 2 2 2 2 2 2 2 1310000000 878750000 431240000 21491 2436 19749 112107;112108;112109 135920;135921;135922 135920 3 VWLDPNETNEIANANSR Unmodified 1941.9181 0.91806787 1456 P84098 RPL19 60S ribosomal protein L19 yes yes 0 0 0 0 By MS/MS By MS/MS 3.71 1.03 2 4 4 4 7 7 61.966 61.869 2;3 5.7078E-60 19253 20211116_3431_TMUAki_TMT10x_P_F4 277.54 253.2 81762000 140600000 461940 132850000 104580000 141340000 96580000 106840000 97073000 100110000 107320000 76127000 131170000 6806500 136200000 100060000 142690000 98399000 110170000 99098000 98054000 103210000 23 23 10 23 23 23 23 23 23 23 23 45600000 75539000 393460 72942000 68365000 108190000 66117000 60727000 55205000 56181000 59350000 42458000 70476000 4102200 75124000 65495000 106970000 66845000 64002000 56786000 55056000 57124000 13 13 6 13 13 13 13 13 13 13 13 36162000 65063000 68488 59907000 36218000 33155000 30464000 46115000 41868000 43934000 47975000 33668000 60692000 2704300 61080000 34564000 35717000 31554000 46168000 42312000 42998000 46090000 10 10 4 10 10 10 10 10 10 10 10 14390000000 7936200000 6453500000 21492 1456 19750 112110;112111;112112;112113;112114;112115;112116;112117;112118;112119;112120;112121;112122;112123 135923;135924;135925;135926;135927;135928;135929;135930;135931;135932;135933;135934;135935;135936;135937;135938;135939;135940;135941;135942;135943;135944;135945;135946 135932 24 VWQLGSSSPNFTLEGHEK Unmodified 2014.9749 0.97485447 936 P35606;P35606-2 COPB2 Coatomer subunit beta' yes no 0 0 0 0 By MS/MS By MS/MS 7.25 0.433 3 1 3 1 60.571 61.175 3 2.4751E-15 18694 20211116_3436_TMUAki_TMT10x_P_F8 130.27 104.68 3058500 5754400 48026 5708400 3510300 2671700 2693100 3059000 2585700 3016800 4073800 2848100 5369300 304660 5781400 3348200 2917800 2771100 3089300 2688000 2948100 3883800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3058500 5754400 48026 5708400 3510300 2671700 2693100 3059000 2585700 3016800 4073800 2848100 5369300 304660 5781400 3348200 2917800 2771100 3089300 2688000 2948100 3883800 1 1 1 1 1 1 1 1 1 1 1 1250300000 794860000 455470000 21493 936 19751 112124;112125;112126;112127 135947;135948;135949 135948 3 VWQVTIGTR Unmodified 1058.5873 0.58727866 1405 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 3.11 2.02 2 2 2 2 1 4 5 55.063 54.895 2 4.6546E-06 19081 20211116_3441_TMUAki_TMT10x_S_F3 185.58 101.83 83919000 129320000 803590 149810000 115050000 111780000 100390000 51069000 42716000 52632000 87623000 78139000 120750000 7723900 150820000 109970000 114850000 100810000 55034000 47574000 51339000 83136000 13 13 3 13 13 13 13 13 13 13 13 60584000 92251000 750020 108080000 91597000 96585000 79958000 37348000 31869000 38293000 63400000 56413000 86140000 5934600 108970000 87566000 97773000 80225000 40991000 35644000 37360000 60183000 9 9 2 9 9 9 9 9 9 9 9 23335000 37072000 53567 41731000 23450000 15191000 20433000 13721000 10847000 14339000 24223000 21726000 34609000 1789300 41846000 22399000 17079000 20587000 14043000 11929000 13978000 22953000 4 4 1 4 4 4 4 4 4 4 4 9612600000 5592700000 4020000000 21494 1405 19752 112128;112129;112130;112131;112132;112133;112134;112135;112136 135950;135951;135952;135953;135954;135955;135956;135957;135958;135959;135960;135961;135962;135963;135964 135962 15 VWYHVCSSR Unmodified 1192.5448 0.54476192 2334 Q92499;Q92499-3 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 36.02 35.789 3 0.00084769 9821 20211116_3429_TMUAki_TMT10x_P_F2 87.258 75.627 529330 785480 10289 1038600 1605900 1342000 733320 926990 876690 724210 850000 492940 733890 68553 1046200 1518500 1339100 793900 957380 884660 715660 820790 1 1 1 1 1 1 1 1 1 1 1 529330 785480 10289 1038600 1605900 1342000 733320 926990 876690 724210 850000 492940 733890 68553 1046200 1518500 1339100 793900 957380 884660 715660 820790 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 44329000 44329000 0 21495 2334 19753 112137;112138;112139 135965;135966;135967 135966 3 VWYVSNIDGTHIAK Unmodified 1601.8202 0.82019173 522 P06744;P06744-2 GPI Glucose-6-phosphate isomerase yes no 0 0 0 0 By MS/MS By MS/MS 6.33 2.36 1 2 2 1 58.144 58.11 3 1.3446E-09 17373 20211116_3436_TMUAki_TMT10x_P_F8 133.14 112.18 25310000 40866000 282660 49014000 37313000 47854000 33572000 25452000 20206000 21929000 29975000 23566000 38163000 2273300 49410000 35684000 48319000 33835000 26903000 21487000 21563000 28613000 4 4 2 4 4 4 4 4 4 4 4 20133000 31367000 167780 37195000 31980000 43644000 29166000 20708000 15950000 17197000 23358000 18745000 29291000 1734800 37630000 30587000 43549000 29323000 22107000 17068000 16940000 22304000 3 3 1 3 3 3 3 3 3 3 3 5177100 9498500 114880 11819000 5332200 4209700 4405900 4743700 4255500 4732400 6616700 4821300 8871800 538460 11780000 5096500 4769900 4512800 4795800 4419600 4622400 6309800 1 1 1 1 1 1 1 1 1 1 1 1922800000 1206900000 715900000 21496 522 19754 112140;112141;112142 135968;135969;135970;135971 135969 4 VYAAATEDMDCLTFGSPVLMR 2 Oxidation (M) 2378.0593 0.059254077 978 P39748;P39748-2 FEN1 Flap endonuclease 1 yes no 0 0 2 0 By MS/MS By MS/MS 4 0 2 1 1 69.513 69.462 3 8.8799E-05 22850 20211116_3442_TMUAki_TMT10x_S_F4 65.022 55.273 4922200 7812800 17576 7519400 5072000 7921000 5122700 5481300 6015000 5599900 5891900 4583200 7289000 426560 7697700 4865600 7989800 5221100 5699700 6075900 5464300 5687500 2 2 2 2 2 2 2 2 2 2 2 2469300 3844500 7127.4 4227700 2689100 5269500 2581300 2930500 3174600 2981600 3136700 2299200 3588800 214440 4301400 2576200 5251400 2642300 3099100 3202300 2909900 3027000 1 1 1 1 1 1 1 1 1 1 1 2452900 3968300 10449 3291700 2382900 2651500 2541400 2550800 2840400 2618300 2755200 2284000 3700300 212120 3396300 2289500 2738400 2578800 2600500 2873600 2554400 2660500 1 1 1 1 1 1 1 1 1 1 1 2013200000 1158100000 855120000 21497 978 19755 112143;112144 135972;135973 135973 1257;1258 2 VYAAATEDMDCLTFGSPVLMR Oxidation (M) 2362.0643 0.064339455 978 P39748;P39748-2 FEN1 Flap endonuclease 1 yes no 0 0 1 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 75.725 75.745 3 1.2848E-14 24063 20211116_3444_TMUAki_TMT10x_S_F5 138.05 132.79 3545200 6140000 0 5120300 3925200 5024700 4281600 3763300 3801600 3804900 4581900 3300600 5725500 263230 5294100 3770300 5096400 4309500 3891200 3916200 3714300 4395800 2 2 0 2 2 2 2 2 2 2 2 1755200 2885400 0 2367500 1595700 2915500 1927600 1730700 1632300 1695500 2146400 1634200 2690400 135500 2460000 1537900 2909700 1928800 1818400 1691800 1657300 2054700 1 1 0 1 1 1 1 1 1 1 1 1790000 3254600 0 2752800 2329500 2109200 2354000 2032700 2169200 2109400 2435500 1666400 3035000 127730 2834100 2232400 2186700 2380700 2072800 2224400 2057000 2341200 1 1 0 1 1 1 1 1 1 1 1 783900000 453080000 330820000 21498 978 19755 112145;112146;112147 135974;135975;135976 135976 1257;1258 3 VYAILTHGIFSGPAISR Unmodified 1800.9887 0.98865404 1279;633 P11908;P11908-2;P60891;P60891-2;P21108 PRPS2;PRPS1;PRPS1L1 Ribose-phosphate pyrophosphokinase 2;Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 3 no no 0 0 0 0 By MS/MS By MS/MS 5.71 1.03 1 2 2 2 4 3 74.226 74.272 3 3.63E-47 25708 20211116_3446_TMUAki_TMT10x_S_F7 238.64 221.89 36088000 61893000 725990 55825000 40726000 58460000 42658000 41908000 37397000 40198000 45826000 33607000 57730000 3666700 57419000 39139000 59021000 43006000 43393000 38574000 39330000 43946000 8 8 7 8 8 8 8 8 8 8 8 19496000 32823000 479410 30641000 19880000 38974000 23207000 21575000 18960000 20644000 23725000 18156000 30619000 2068500 31538000 19175000 38799000 23235000 22786000 19643000 20200000 22739000 4 4 4 4 4 4 4 4 4 4 4 16592000 29070000 246580 25184000 20846000 19486000 19451000 20332000 18437000 19554000 22101000 15450000 27111000 1598200 25881000 19964000 20222000 19771000 20606000 18931000 19129000 21207000 4 4 3 4 4 4 4 4 4 4 4 10303000000 4771100000 5531800000 21499 633;1279 19756 112148;112149;112150;112151;112152;112153;112154 135977;135978;135979;135980;135981;135982;135983;135984 135984 8 VYALPEDLVEVKPK Unmodified 1598.892 0.89195969 658 P13797;P13797-3;P13797-2 PLS3 Plastin-3 yes no 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 67.172 67.385 3 4.8788E-14 20986 20211116_3445_TMUAki_TMT10x_S_F6 151.54 55.91 52275000 89171000 1420500 94633000 70209000 87692000 64494000 66817000 67840000 68742000 74526000 48684000 83226000 5909000 96051000 67262000 89294000 65821000 69047000 69106000 67057000 71685000 8 8 8 8 8 8 8 8 8 8 8 26426000 43236000 1079100 46493000 38026000 59897000 36861000 33157000 33965000 34704000 37194000 24613000 40356000 3359100 47401000 36497000 59591000 37361000 35108000 34794000 33830000 35780000 4 4 4 4 4 4 4 4 4 4 4 25849000 45934000 341380 48139000 32183000 27795000 27632000 33660000 33875000 34037000 37332000 24071000 42870000 2549900 48650000 30765000 29703000 28460000 33939000 34311000 33227000 35906000 4 4 4 4 4 4 4 4 4 4 4 4845000000 2218400000 2626600000 21500 658 19757 112155;112156;112157;112158 135985;135986;135987;135988;135989;135990;135991;135992 135989 8 VYAPAGPATVEPAK Unmodified 1369.7242 0.72416608 3414 yes no 0 0 0 0 By MS/MS By MS/MS 2.86 2.18 6 6 7 3 13 9 64.726 64.518 2;3 0.0030927 21495 20211116_3429_TMUAki_TMT10x_P_F2 68.893 22.892 + 187380000 307800000 2053600 322670000 201640000 308530000 207560000 218110000 228560000 228760000 239160000 174470000 287260000 16629000 327920000 193550000 313150000 210880000 226640000 231970000 222980000 230380000 29 29 18 29 29 29 29 29 29 29 29 110380000 173490000 994950 183920000 141570000 232800000 141670000 122290000 130560000 132600000 136340000 102780000 161930000 9855400 187620000 135760000 231660000 143360000 130230000 133510000 129080000 131350000 16 16 9 16 16 16 16 16 16 16 16 76993000 134300000 1058700 138760000 60065000 75728000 65889000 95812000 97998000 96165000 102820000 71693000 125340000 6773400 140300000 57781000 81486000 67523000 96412000 98462000 93905000 99036000 13 13 9 13 13 13 13 13 13 13 13 54834000000 34572000000 20263000000 21501 3414 19758 112159;112160;112161;112162;112163;112164;112165;112166;112167;112168;112169;112170;112171;112172;112173;112174;112175;112176;112177;112178;112179;112180 135993;135994;135995;135996;135997;135998;135999;136000;136001;136002;136003;136004;136005;136006;136007 135997 15 VYATILNAGTNTDGFK Unmodified 1683.8468 0.84680041 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS 8 0 1 1 70.12 70.201 3 3.0505E-21 22378 20211116_3436_TMUAki_TMT10x_P_F8 164.15 144.54 2843800 4694900 107130 4440300 3239000 4803900 2715000 2228600 2191600 2516400 3297500 2648700 4379900 341140 4553200 3099000 4813600 2765100 2404400 2291700 2445800 3146700 1 1 1 1 1 1 1 1 1 1 1 2843800 4694900 107130 4440300 3239000 4803900 2715000 2228600 2191600 2516400 3297500 2648700 4379900 341140 4553200 3099000 4813600 2765100 2404400 2291700 2445800 3146700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 720390000 720390000 0 21502 1092 19759 112181 136008 136008 1 VYAVATSTNTPCAR Unmodified 1509.7246 0.72457678 1558 Q10570 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 36.708 37.182 3 4.899E-10 8289 20211116_3447_TMUAki_TMT10x_S_F8 118.88 99.75 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21503 1558 19760 112182;112183 136009;136010 136010 2 VYDETTVDPNDEEVAYDEATDEFASYFNK Unmodified 3375.4103 0.41028748 2848 Q9H9Y2 RPF1 Ribosome production factor 1 yes yes 0 0 0 0 By MS/MS 1 0 1 1 80.667 80.667 3 2.4733E-18 26570 20211116_3428_TMUAki_TMT10x_P_F1 125.82 121.83 789820 1234200 13357 1146800 695550 1320700 930330 726610 720050 674760 1010900 735500 1151300 76609 1178700 673630 1321400 924890 767200 752050 661150 966150 1 1 1 1 1 1 1 1 1 1 1 789820 1234200 13357 1146800 695550 1320700 930330 726610 720050 674760 1010900 735500 1151300 76609 1178700 673630 1321400 924890 767200 752050 661150 966150 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 574750000 574750000 0 21504 2848 19761 112184 136011 136011 1 VYEAVELLK Unmodified 1062.5961 0.59611202 2287 Q8TEQ6 GEMIN5 Gem-associated protein 5 yes yes 0 0 0 0 By MS/MS 6 0 1 1 71.628 71.538 2 3.2272E-05 22685 20211116_3445_TMUAki_TMT10x_S_F6 116.52 59.418 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21505 2287 19762 112185 136012 136012 1 VYEFLDKLDVVR Unmodified 1494.8082 0.80823006 203 O43242;O43242-2 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes no 0 0 0 1 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 77.371 77.377 3 0.0010517 27181 20211116_3446_TMUAki_TMT10x_S_F7 78.505 55.588 27527000 45669000 178160 44809000 34069000 24150000 31223000 22983000 19347000 24273000 32765000 25632000 42610000 2539900 45464000 32606000 25851000 31452000 23465000 20678000 23653000 31192000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27527000 45669000 178160 44809000 34069000 24150000 31223000 22983000 19347000 24273000 32765000 25632000 42610000 2539900 45464000 32606000 25851000 31452000 23465000 20678000 23653000 31192000 3 3 3 3 3 3 3 3 3 3 3 2082700000 0 2082700000 21506 203 19763 112186;112187;112188 136013;136014;136015;136016 136014 4 VYEGERPLTK Unmodified 1190.6295 0.62953741 614 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.304 35.358 3 1.6958E-06 8848 20211116_3433_TMUAki_TMT10x_P_F5 147.62 122.49 15348000 25700000 253150 24605000 32879000 30865000 20348000 16526000 18995000 16219000 21275000 14292000 23977000 1747000 25272000 31226000 30735000 21253000 17517000 19464000 15853000 20452000 7 7 6 7 7 7 7 7 7 7 7 13688000 22842000 232640 21752000 30715000 29371000 18034000 14589000 16844000 14367000 18848000 12746000 21310000 1583200 22381000 29146000 29119000 18919000 15573000 17259000 14040000 18120000 5 5 4 5 5 5 5 5 5 5 5 1660500 2858400 20519 2853000 2164200 1493900 2313900 1937100 2151200 1852300 2427100 1546300 2667200 163840 2890600 2080100 1615700 2334200 1944600 2205400 1812500 2332700 2 2 2 2 2 2 2 2 2 2 2 879880000 735110000 144770000 21507 614 19764 112189;112190;112191 136017;136018;136019;136020;136021;136022;136023 136019 7 VYEIQDIYENSWTK Unmodified 1786.8414 0.84138068 3224 Q9Y262;Q9Y262-2 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 0 0 0 0 By MS/MS 6 0 1 1 76.91 76.88 3 0.015255 24519 20211116_3434_TMUAki_TMT10x_P_F6 50.108 38.417 3081600 5229400 0 4790100 3074700 5661200 3566100 3288200 2894000 3556900 3681200 2869000 4877900 223880 4930700 2958400 5660200 3570700 3471000 3001500 3462800 3526700 1 1 0 1 1 1 1 1 1 1 1 3081600 5229400 0 4790100 3074700 5661200 3566100 3288200 2894000 3556900 3681200 2869000 4877900 223880 4930700 2958400 5660200 3570700 3471000 3001500 3462800 3526700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 228300000 228300000 0 21508 3224 19765 112192 136024 136024 1 VYELQASR Unmodified 964.49779 0.49779495 3224 Q9Y262;Q9Y262-2 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 0 0 0 0 By MS/MS 4 0 1 1 35.693 35.8 2 0.03038 9081 20211116_3442_TMUAki_TMT10x_S_F4 62.969 29.53 240570 419010 0 446450 239320 208420 267000 156160 183740 172660 273850 223980 391080 18039 449950 230050 225830 266800 161910 193760 167950 261380 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 240570 419010 0 446450 239320 208420 267000 156160 183740 172660 273850 223980 391080 18039 449950 230050 225830 266800 161910 193760 167950 261380 1 1 0 1 1 1 1 1 1 1 1 8254300 0 8254300 21509 3224 19766 112193 136025 136025 1 VYENYPTYDLTER Unmodified 1661.7573 0.7573167 942 P35659;P35659-2 DEK Protein DEK yes no 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 54.896 54.779 2 9.0598E-62 18004 20211116_3430_TMUAki_TMT10x_P_F3 292.33 269.69 4430500 8119600 15984 8494800 4616100 5627800 3701400 7704300 6946500 6600300 7235400 4125100 7577800 359680 8596700 4402400 5956800 3902800 7695300 6935100 6491700 6970700 3 3 1 3 3 3 3 3 3 3 3 912390 1570500 15984 1555300 1818800 2595000 1436000 1534100 1421500 1410400 1336800 849650 1465400 103240 1603300 1735300 2555600 1476100 1609600 1443800 1382600 1292200 1 1 1 1 1 1 1 1 1 1 1 3518100 6549100 0 6939500 2797300 3032800 2265400 6170200 5524900 5189900 5898500 3275500 6112500 256440 6993500 2667200 3401100 2426600 6085700 5491300 5109100 5678500 2 2 0 2 2 2 2 2 2 2 2 879920000 394960000 484960000 21510 942 19767 112194;112195;112196;112197;112198 136026;136027;136028;136029;136030;136031 136027 6 VYENYPTYDLTERK Unmodified 1789.8523 0.85227972 942 P35659;P35659-2 DEK Protein DEK yes no 0 0 0 1 By MS/MS By MS/MS 4.75 0.433 1 3 2 2 49.676 49.863 3 8.3461E-19 13509 20211116_3444_TMUAki_TMT10x_S_F5 162.41 137.98 9396200 16287000 116060 22311000 12303000 11989000 8072500 12261000 13574000 11061000 13858000 8749600 15220000 927890 22181000 11697000 12857000 8579800 12417000 13579000 10853000 13359000 3 3 3 3 3 3 3 3 3 3 3 3102800 5538100 38821 6959000 7721600 8092300 4671000 4145600 4368900 3747500 4274300 2889300 5173000 358110 7015900 7329500 8085300 4888100 4402200 4454400 3676400 4126200 1 1 1 1 1 1 1 1 1 1 1 6293400 10749000 77242 15352000 4581500 3897000 3401500 8115600 9205500 7313900 9583400 5860400 10047000 569780 15165000 4368000 4771400 3691700 8014500 9124400 7176200 9233100 2 2 2 2 2 2 2 2 2 2 2 691010000 428140000 262860000 21511 942 19768 112199;112200;112201;112202 136032;136033;136034;136035;136036 136034 5 VYFLPITPHYVTQVIR Unmodified 1945.0826 0.082554423 831 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 74.424 74.406 3 0.0004065 23870 20211116_3445_TMUAki_TMT10x_S_F6 71.316 48.303 13979000 23839000 763010 25088000 16451000 23521000 17913000 14543000 16065000 15371000 18804000 13022000 22249000 1904700 25482000 15857000 23857000 18036000 15264000 16522000 14978000 18055000 5 5 5 5 5 5 5 5 5 5 5 9040900 14698000 572500 16044000 9682900 17841000 11737000 9046000 9498900 9455100 11261000 8422200 13720000 1292100 16299000 9370700 17867000 11728000 9653400 9823900 9217400 10808000 3 3 3 3 3 3 3 3 3 3 3 4938600 9141000 190510 9044000 6767900 5679800 6176400 5496700 6566500 5916400 7543600 4599700 8529200 612610 9182900 6486100 5989600 6308000 5610500 6697900 5761000 7246700 2 2 2 2 2 2 2 2 2 2 2 1959300000 895570000 1063700000 21512 831 19769 112203;112204;112205;112206 136037;136038;136039;136040;136041 136041 5 VYFQSPPGAAGEGPGGADDEGPVRR Unmodified 2485.1622 0.16221432 2423 Q96C90 PPP1R14B Protein phosphatase 1 regulatory subunit 14B yes yes 0 0 0 1 By MS/MS By MS/MS 4.29 1.03 2 2 2 1 3 4 46.617 46.682 3 4.0887E-38 13376 20211116_3442_TMUAki_TMT10x_S_F4 189.62 171.56 40453000 76228000 520200 85248000 68946000 63602000 50646000 36701000 33830000 35751000 52666000 37669000 71163000 4118500 86006000 65673000 65525000 51809000 38644000 35820000 34956000 50222000 14 14 11 14 14 14 14 14 14 14 14 20355000 37127000 198460 41837000 53386000 52628000 41974000 18714000 17800000 18348000 26360000 18953000 34661000 2215900 42509000 50906000 52186000 42424000 20728000 19470000 17934000 25164000 8 8 5 8 8 8 8 8 8 8 8 20098000 39102000 321740 43411000 15560000 10975000 8672500 17986000 16030000 17404000 26306000 18716000 36502000 1902600 43497000 14766000 13338000 9384800 17916000 16350000 17022000 25058000 6 6 6 6 6 6 6 6 6 6 6 5032200000 3005700000 2026500000 21513 2423 19770 112207;112208;112209;112210;112211;112212;112213 136042;136043;136044;136045;136046;136047;136048;136049;136050;136051;136052;136053;136054;136055 136051 14 VYGPGVAK Unmodified 789.43849 0.43848916 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 7 0.894 2 1 2 3 2 37.41 37.673 2 0.00042628 8584 20211116_3447_TMUAki_TMT10x_S_F8 145.87 91.462 2498700 4457600 22252 3971200 3789700 3970100 3185500 2128000 2311000 2140700 3136300 2326600 4157600 235530 4085600 3619300 4003200 3235700 2257000 2418600 2090200 3000000 5 5 2 5 5 5 5 5 5 5 5 1664900 2854400 9638.4 2589200 2765600 3180100 2037100 1467300 1604300 1449300 2013800 1550100 2662500 153200 2669000 2633400 3164700 2091000 1577700 1665600 1416200 1929900 3 3 1 3 3 3 3 3 3 3 3 833830 1603100 12613 1381900 1024200 790070 1148400 660760 706730 691460 1122600 776470 1495100 82327 1416600 985830 838470 1144700 679260 753060 674050 1070000 2 2 1 2 2 2 2 2 2 2 2 158890000 128950000 29939000 21514 755 19771 112214;112215;112216;112217;112218 136056;136057;136058;136059;136060 136060 5 VYHIECFR Unmodified 1122.528 0.52804923 1311 P61371 ISL1 Insulin gene enhancer protein ISL-1 yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 37.657 37.821 3 0.0074826 8852 20211116_3434_TMUAki_TMT10x_P_F6 67.494 33.092 554970 917470 0 786920 572020 427240 670000 406320 410870 421170 644960 516600 855610 30332 806630 549910 456960 666470 414620 437640 410720 614920 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 554970 917470 0 786920 572020 427240 670000 406320 410870 421170 644960 516600 855610 30332 806630 549910 456960 666470 414620 437640 410720 614920 1 1 0 1 1 1 1 1 1 1 1 12276000 0 12276000 21515 1311 19772 112219;112220 136061;136062 136061 2 VYIVHGVQEDLR Unmodified 1426.7569 0.75686319 1756 Q15024 EXOSC7 Exosome complex component RRP42 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 1 3 44.894 45.039 3 1.1387E-06 12599 20211116_3433_TMUAki_TMT10x_P_F5 118.76 97.698 5035400 8679600 77946 10748000 7548800 5813100 5226400 5080300 5428300 4705900 7352600 4689000 8106800 525310 10745000 7184500 6210000 5429000 5191100 5581900 4611500 7033200 3 3 3 3 3 3 3 3 3 3 3 1530000 2635500 32829 3347400 4140300 3122000 2170800 1381000 1474200 1298100 2290500 1424800 2461800 194000 3361200 3922400 3155300 2283300 1489500 1559200 1271200 2184300 1 1 1 1 1 1 1 1 1 1 1 3505400 6044200 45117 7400700 3408500 2691200 3055600 3699300 3954200 3407800 5062100 3264200 5644900 331310 7383700 3262100 3054700 3145700 3701600 4022700 3340300 4848900 2 2 2 2 2 2 2 2 2 2 2 284460000 217270000 67187000 21516 1756 19773 112221;112222;112223;112224 136063;136064;136065;136066;136067 136063 5 VYLLYRPGHYDILYK Unmodified 1912.0247 0.024705193 2463 Q96FW1;Q96FW1-2 OTUB1 Ubiquitin thioesterase OTUB1 yes no 0 0 0 1 By MS/MS By MS/MS 4.14 0.639 1 4 2 4 3 63.916 63.914 3;4 3.6362E-14 20045 20211116_3431_TMUAki_TMT10x_P_F4 146.47 136.01 39245000 68130000 522060 66334000 51875000 73098000 49932000 47007000 43046000 47098000 47859000 36544000 63566000 3826600 67900000 49717000 73464000 50536000 49113000 44264000 45995000 46019000 10 10 8 10 10 10 10 10 10 10 10 24413000 41678000 302110 40780000 30476000 57312000 33673000 30070000 27397000 29684000 28565000 22733000 38887000 2316200 41913000 29315000 56753000 33795000 31936000 28188000 29007000 27520000 6 6 5 6 6 6 6 6 6 6 6 14831000 26452000 219960 25554000 21400000 15786000 16258000 16938000 15649000 17414000 19294000 13811000 24679000 1510400 25987000 20402000 16710000 16742000 17178000 16076000 16988000 18499000 4 4 3 4 4 4 4 4 4 4 4 6391900000 4268600000 2123300000 21517 2463 19774 112225;112226;112227;112228;112229;112230;112231 136068;136069;136070;136071;136072;136073;136074;136075;136076;136077;136078 136070 11 VYNEAGVTFT Unmodified 1099.5186 0.51858998 463 P00367;P00367-3;P00367-2 GLUD1 Glutamate dehydrogenase 1, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 60.656 60.482 2 0.0042171 18725 20211116_3431_TMUAki_TMT10x_P_F4 78.334 63.817 13734000 23877000 271320 24701000 17386000 24354000 16860000 16606000 16611000 15650000 18840000 12789000 22283000 1381100 25136000 16670000 24658000 17122000 17247000 16989000 15324000 18105000 5 5 4 5 5 5 5 5 5 5 5 8059500 13305000 132680 13618000 11362000 18205000 10419000 9831100 9536600 9032900 10877000 7504700 12416000 776600 13939000 10875000 18075000 10591000 10394000 9788100 8854900 10451000 3 3 2 3 3 3 3 3 3 3 3 5674000 10572000 138640 11083000 6023800 6149200 6440900 6775200 7074800 6616700 7963500 5284100 9866900 604520 11197000 5794800 6582800 6531100 6852200 7201200 6468700 7654500 2 2 2 2 2 2 2 2 2 2 2 1626600000 857110000 769500000 21518 463 19775 112232;112233;112234;112235 136079;136080;136081;136082;136083 136081 5 VYNVTQHAVGIVVNK Unmodified 1639.9046 0.90459006 1052 P46778 RPL21 60S ribosomal protein L21 yes yes 0 0 0 0 By MS/MS By MS/MS 2.85 1.79 2 5 4 1 1 8 5 54.872 54.679 2;3;4 2.2641E-43 17454 20211116_3429_TMUAki_TMT10x_P_F2 262 231.43 83034000 145410000 1171000 172310000 112690000 122790000 83133000 110050000 102210000 101620000 111620000 77320000 135780000 8255500 173140000 107370000 127860000 86461000 112290000 103480000 99592000 107390000 18 18 14 18 18 18 18 18 18 18 18 33200000 55733000 879270 64487000 68064000 83853000 46515000 44866000 41524000 41917000 42022000 30919000 52037000 4005200 65459000 64771000 83353000 48154000 47496000 42480000 41060000 40522000 10 10 7 10 10 10 10 10 10 10 10 49834000 89678000 291710 107820000 44625000 38936000 36618000 65188000 60686000 59700000 69602000 46402000 83747000 4250400 107680000 42599000 44505000 38307000 64790000 61000000 58532000 66867000 8 8 7 8 8 8 8 8 8 8 8 25256000000 15991000000 9265200000 21519 1052 19776 112236;112237;112238;112239;112240;112241;112242;112243;112244;112245;112246;112247;112248 136084;136085;136086;136087;136088;136089;136090;136091;136092;136093;136094;136095;136096;136097;136098;136099;136100;136101;136102 136089 19 VYNYNHLMPTR Oxidation (M) 1422.6714 0.671419 1310 P61353 RPL27 60S ribosomal protein L27 yes yes 0 0 1 0 By MS/MS By MS/MS 3.85 2.74 4 2 1 1 1 1 3 7 6 32.55 32.573 3 7.4331E-06 9521 20211116_3439_TMUAki_TMT10x_S_F1 110.93 95.545 5176200 8129400 60662 9635700 11443000 10475000 6290700 5353200 6188200 5904000 7162100 4819600 7591200 516730 9736100 10843000 10504000 6647200 5717700 6334500 5743400 6878900 13 13 8 13 13 13 13 13 13 13 13 3445700 5181400 40160 6232600 9682800 8328700 4796800 3442800 3988900 3800600 4711700 3208200 4838700 354610 6315400 9160300 8245600 5096100 3757700 4119000 3697100 4522800 7 7 3 7 7 7 7 7 7 7 7 1730500 2948000 20502 3403100 1760700 2146200 1493800 1910400 2199300 2103400 2450400 1611400 2752500 162120 3420800 1682700 2258700 1551100 1960000 2215400 2046300 2356100 6 6 5 6 6 6 6 6 6 6 6 1962500000 1634900000 327620000 21520 1310 19777 112249;112250;112251;112252;112253;112254;112255;112256;112257;112258;112259;112260;112261 136103;136104;136105;136106;136107;136108;136109;136110;136111;136112;136113;136114;136115 136111 1769 13 VYNYNHLMPTR Unmodified 1406.6765 0.67650438 1310 P61353 RPL27 60S ribosomal protein L27 yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 41.384 41.379 3 2.4545E-11 12565 20211116_3439_TMUAki_TMT10x_S_F1 165.3 148.92 18510000 29206000 125310 29169000 39974000 29762000 25407000 26466000 23976000 20310000 29306000 17235000 27252000 1873500 29769000 37965000 30209000 26489000 26891000 24643000 20090000 28106000 7 7 6 7 7 7 7 7 7 7 7 12195000 19053000 40627 18718000 32401000 24133000 17572000 17302000 15682000 13510000 19798000 11354000 17777000 1253400 19200000 30692000 24098000 18541000 17822000 16182000 13351000 18971000 3 3 2 3 3 3 3 3 3 3 3 6315100 10153000 84680 10451000 7573000 5629300 7835100 9164800 8294100 6800400 9508600 5880700 9474900 620110 10569000 7273100 6111600 7948000 9069000 8460800 6739000 9135000 4 4 4 4 4 4 4 4 4 4 4 2508500000 1914800000 593730000 21521 1310 19777 112262;112263;112264;112265;112266;112267 136116;136117;136118;136119;136120;136121;136122 136119 7 VYQWDDPDPR Unmodified 1289.5677 0.56766543 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 3.75 0.433 1 3 2 2 49.234 48.881 2 5.8151E-05 16688 20211116_3441_TMUAki_TMT10x_S_F3 131.06 92.099 1996900 3132500 0 5032900 1150700 994560 1024000 1477000 1807000 1475200 2766500 1859300 2930100 147480 4939800 1099700 1273100 1069600 1477300 1838100 1440800 2639000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1996900 3132500 0 5032900 1150700 994560 1024000 1477000 1807000 1475200 2766500 1859300 2930100 147480 4939800 1099700 1273100 1069600 1477300 1838100 1440800 2639000 1 1 0 1 1 1 1 1 1 1 1 315230000 0 315230000 21522 1092 19778 112268;112269;112270;112271 136123;136124;136125;136126 136125 4 VYRIEGDETSTEAATR Unmodified 1796.8541 0.85407063 1176 P52434;P52434-3;P52434-4 POLR2H DNA-directed RNA polymerases I, II, and III subunit RPABC3 yes no 0 0 0 1 By MS/MS By MS/MS 2.25 0.829 1 1 2 3 1 34.512 34.391 3 2.3947E-35 10725 20211116_3441_TMUAki_TMT10x_S_F3 200.33 166.15 1119100 1758200 2083.2 2151900 2661500 2183400 1480700 1610100 1692500 1230900 1775900 1041900 1642100 111790 2167900 2522100 2209500 1570200 1654600 1715500 1217800 1710600 3 3 1 3 3 3 3 3 3 3 3 606630 873670 0 1128200 2048500 1649900 849990 942970 948730 682450 979560 564790 816180 65951 1140800 1933800 1632800 927910 986620 961940 677250 943990 2 2 0 2 2 2 2 2 2 2 2 512450 884520 2083.2 1023700 613010 533520 630680 667150 743740 548440 796360 477150 825880 45835 1027100 588360 576750 642310 668020 753550 540530 766590 1 1 1 1 1 1 1 1 1 1 1 223160000 165940000 57222000 21523 1176 19779 112272;112273;112274;112275 136127;136128;136129 136129 3 VYSLDDIRR Unmodified 1135.5986 0.59857163 1716 Q14566 MCM6 DNA replication licensing factor MCM6 yes yes 0 0 0 1 By MS/MS 5 1 1 1 2 40.251 40.414 3 7.6053E-06 9954 20211116_3445_TMUAki_TMT10x_S_F6 158.57 118.63 381660 597910 3666.8 802080 262380 270590 289280 439180 597560 470380 569750 355390 558680 33389 795890 252480 312240 301570 438960 593440 458110 550480 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 381660 597910 3666.8 802080 262380 270590 289280 439180 597560 470380 569750 355390 558680 33389 795890 252480 312240 301570 438960 593440 458110 550480 1 1 1 1 1 1 1 1 1 1 1 40980000 0 40980000 21524 1716 19780 112276;112277 136130;136131 136131 2 VYSLFLDESR Unmodified 1227.6136 0.61355299 3221 Q9Y230;Q9Y230-2 RUVBL2 RuvB-like 2 yes no 0 0 0 0 By MS/MS By MS/MS 4.1 1.3 1 3 2 2 2 5 5 69.978 69.907 2 1.0203E-12 23014 20211116_3442_TMUAki_TMT10x_S_F4 195.57 135.21 21793000 36268000 39410 34750000 29624000 34429000 25209000 25772000 24945000 26292000 28421000 20291000 33836000 1820300 35553000 28287000 34899000 25794000 26656000 25512000 25657000 27309000 5 5 2 5 5 5 5 5 5 5 5 11028000 18800000 39410 17923000 14126000 23391000 14292000 13480000 13135000 13630000 14236000 10268000 17539000 958990 18428000 13549000 23269000 14453000 14210000 13452000 13306000 13699000 3 3 2 3 3 3 3 3 3 3 3 10766000 17467000 0 16826000 15498000 11038000 10917000 12292000 11810000 12662000 14185000 10023000 16296000 861330 17124000 14738000 11630000 11341000 12446000 12060000 12351000 13610000 2 2 0 2 2 2 2 2 2 2 2 3691500000 2538100000 1153400000 21525 3221 19781 112278;112279;112280;112281;112282;112283;112284;112285;112286;112287 136132;136133;136134;136135;136136;136137;136138;136139 136137 8 VYSVLSDREQR Unmodified 1350.6892 0.68917755 2326 Q8WXX5 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 37.041 37.097 3 5.9456E-07 8286 20211116_3444_TMUAki_TMT10x_S_F5 134.99 111.24 1681500 2521400 0 2997600 3308300 2349500 1746600 1912600 2278500 1673900 2397700 1565500 2354500 137700 3014700 3131300 2423700 1869800 1959500 2298900 1644600 2309300 2 2 0 2 2 2 2 2 2 2 2 928720 1245300 0 1501600 2521000 1772000 1042400 964240 1182900 920500 1195700 864610 1162900 84299 1517800 2379100 1770300 1139000 1019800 1197700 900810 1153100 1 1 0 1 1 1 1 1 1 1 1 752810 1276200 0 1496000 787340 577530 704250 948390 1095600 753390 1202000 700870 1191600 53396 1496900 752230 653340 730810 939700 1101200 743840 1156200 1 1 0 1 1 1 1 1 1 1 1 197070000 126690000 70385000 21526 2326 19782 112288;112289;112290 136140;136141 136141 2 VYSYALALK Unmodified 1026.575 0.57498264 3157 Q9UKK9 NUDT5 ADP-sugar pyrophosphatase yes yes 0 0 0 0 By MS/MS 3 0 1 1 65.727 65.269 2 0.0021478 23382 20211116_3441_TMUAki_TMT10x_S_F3 82.426 49.585 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21527 3157 19783 112291 136142 136142 1 VYSYFECR Unmodified 1122.4804 0.48043033 1031 P43490 NAMPT Nicotinamide phosphoribosyltransferase yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 52.005 52.136 2 0.0039345 14299 20211116_3434_TMUAki_TMT10x_P_F6 95.741 78.815 5313400 9077100 70501 8626900 5036100 4498200 4152500 7498700 6795400 6285300 8590600 4947900 8468200 502340 8770900 4810900 4904600 4340000 7436400 6861200 6188500 8231500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5313400 9077100 70501 8626900 5036100 4498200 4152500 7498700 6795400 6285300 8590600 4947900 8468200 502340 8770900 4810900 4904600 4340000 7436400 6861200 6188500 8231500 1 1 1 1 1 1 1 1 1 1 1 102420000 0 102420000 21528 1031 19784 112292;112293 136143;136144 136143 2 VYTITPLLSDNREK Unmodified 1647.8832 0.88318591 900 P32121;P32121-5;P32121-2;P32121-3;P32121-4 ARRB2 Beta-arrestin-2 yes no 0 0 0 1 By MS/MS 7 0 1 1 55.971 56.497 3 1.1738E-09 18467 20211116_3446_TMUAki_TMT10x_S_F7 112.72 91.166 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21529 900 19785 112294 136145 136145 1 VYTLSVSGDR Unmodified 1095.556 0.55603812 234 O43684;O43684-2 BUB3 Mitotic checkpoint protein BUB3 yes no 0 0 0 0 By MS/MS By MS/MS 5 1.22 1 2 2 2 1 3 5 43.773 43.922 2 9.8263E-31 12249 20211116_3433_TMUAki_TMT10x_P_F5 243.38 186.2 10539000 16822000 37587 18762000 10262000 9021500 11067000 10801000 11175000 11255000 13853000 9813100 15704000 854710 18858000 9859000 9831400 11187000 10906000 11459000 10974000 13281000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10539000 16822000 37587 18762000 10262000 9021500 11067000 10801000 11175000 11255000 13853000 9813100 15704000 854710 18858000 9859000 9831400 11187000 10906000 11459000 10974000 13281000 3 3 2 3 3 3 3 3 3 3 3 1166100000 0 1166100000 21530 234 19786 112295;112296;112297;112298;112299;112300;112301;112302 136146;136147;136148;136149;136150;136151;136152;136153;136154 136147 9 VYTLSVSGDRLIVGTAGR Unmodified 1863.0214 0.021410729 234 O43684;O43684-2 BUB3 Mitotic checkpoint protein BUB3 yes no 0 0 0 1 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 59.491 59.282 3 2.8295E-15 20908 20211116_3441_TMUAki_TMT10x_S_F3 131.98 97.022 8929000 15227000 72529 15415000 12708000 18438000 11278000 10598000 10121000 9725700 11040000 8313900 14209000 800040 15758000 12150000 18421000 11479000 11145000 10380000 9534600 10621000 2 2 1 2 2 2 2 2 2 2 2 8929000 15227000 72529 15415000 12708000 18438000 11278000 10598000 10121000 9725700 11040000 8313900 14209000 800040 15758000 12150000 18421000 11479000 11145000 10380000 9534600 10621000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 797570000 589600000 207970000 21531 234 19787 112303;112304;112305;112306 136155;136156;136157 136157 3 VYTPVGK Unmodified 762.42759 0.42759012 1246 P55786;P55786-2 NPEPPS Puromycin-sensitive aminopeptidase yes no 0 0 0 0 By MS/MS 7 0 2 2 36.97 37.655 2 0.046687 10685 20211116_3446_TMUAki_TMT10x_S_F7 70.912 50.631 178540 312730 0 267200 186500 147490 172580 142080 157570 143770 235660 166220 291640 11852 274020 178270 157510 175320 144780 163730 140340 224910 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 178540 312730 0 267200 186500 147490 172580 142080 157570 143770 235660 166220 291640 11852 274020 178270 157510 175320 144780 163730 140340 224910 1 1 0 1 1 1 1 1 1 1 1 6845700 0 6845700 21532 1246 19788 112307;112308 136158;136159 136158 2 VYVAESLISSAGEGLFSK Unmodified 1855.9567 0.95674479 2292 Q8WTS6 SETD7 Histone-lysine N-methyltransferase SETD7 yes yes 0 0 0 0 By matching By MS/MS 8 0 2 1 1 80.152 80.147 3 4.7218E-05 25881 20211116_3447_TMUAki_TMT10x_S_F8 79.514 61.376 1904600 3591900 8462.5 2752500 2703200 3143000 2514800 3364700 2493300 3094100 3041800 1773500 3348500 176980 2873100 2587700 3182800 2560100 3401700 2556900 3033000 2917400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1904600 3591900 8462.5 2752500 2703200 3143000 2514800 3364700 2493300 3094100 3041800 1773500 3348500 176980 2873100 2587700 3182800 2560100 3401700 2556900 3033000 2917400 1 1 1 1 1 1 1 1 1 1 1 470650000 247500000 223150000 21533 2292 19789 112309;112310 136160 136160 1 VYVGNLGNNGNKTELER Unmodified 1875.9439 0.94388869 1457 P84103;P84103-2 SRSF3 Serine/arginine-rich splicing factor 3 yes no 0 0 0 1 By MS/MS By MS/MS 6.14 0.833 2 2 3 3 4 43.753 44.076 3;4 3.3914E-54 11021 20211116_3434_TMUAki_TMT10x_P_F6 276.38 251.02 21366000 30082000 431050 49908000 60021000 46944000 25914000 44236000 60017000 31465000 40276000 19897000 28144000 2676400 49470000 56717000 47945000 29125000 44731000 58864000 31257000 39464000 9 9 6 9 9 9 9 9 9 9 9 11527000 15644000 91441 26403000 54105000 41211000 20263000 23650000 32313000 16351000 21039000 10733000 14638000 1608200 26397000 51031000 40675000 22696000 24713000 31946000 16270000 20645000 4 4 2 4 4 4 4 4 4 4 4 9839400 14439000 339610 23505000 5915900 5732800 5651000 20586000 27704000 15114000 19236000 9163900 13507000 1068200 23073000 5685800 7270300 6428600 20017000 26918000 14986000 18819000 5 5 4 5 5 5 5 5 5 5 5 5744800000 4074200000 1670500000 21534 1457 19790 112311;112312;112313;112314;112315;112316;112317 136161;136162;136163;136164;136165;136166;136167;136168;136169;136170 136162 10 VYVGNLGTGAGKGELER Unmodified 1718.8951 0.89514758 1855 Q16629;Q16629-3;Q16629-2;Q16629-4 SRSF7 Serine/arginine-rich splicing factor 7 yes no 0 0 0 1 By MS/MS By MS/MS 6.5 1.12 2 2 2 2 4 4 46.901 47.109 3 1.2316E-36 14172 20211116_3435_TMUAki_TMT10x_P_F7 216.71 201.33 52262000 80880000 428700 106770000 127960000 127410000 70737000 101620000 119970000 77971000 86418000 48662000 75567000 5541300 107400000 121260000 127940000 76268000 103920000 118710000 77125000 84403000 10 10 6 10 10 10 10 10 10 10 10 36475000 53962000 294950 72596000 116230000 116630000 61327000 68979000 81753000 53263000 57548000 33962000 50422000 4168400 73402000 110070000 115030000 65709000 72068000 81417000 52667000 56264000 6 6 3 6 6 6 6 6 6 6 6 15788000 26918000 133740 34171000 11724000 10775000 9410400 32644000 38219000 24708000 28870000 14701000 25145000 1372900 33998000 11191000 12911000 10558000 31849000 37289000 24458000 28139000 4 4 3 4 4 4 4 4 4 4 4 17161000000 10603000000 6557400000 21535 1855 19791 112318;112319;112320;112321;112322;112323;112324;112325 136171;136172;136173;136174;136175;136176;136177;136178;136179;136180 136174 10 VYVIEPHSMEFAPCQVEAR Oxidation (M) 2277.0558 0.05582368 2286 Q8TEM1;Q8TEM1-2 NUP210 Nuclear pore membrane glycoprotein 210 yes no 0 0 1 0 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 52.205 52.337 3 8.8335E-18 15763 20211116_3442_TMUAki_TMT10x_S_F4 149.73 132.65 2265300 3857900 43412 4442500 2619800 2518400 2155200 3933200 4127400 3568800 3765000 2109400 3602000 222320 4462000 2502300 2716000 2271400 3916700 4099800 3500500 3643200 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2265300 3857900 43412 4442500 2619800 2518400 2155200 3933200 4127400 3568800 3765000 2109400 3602000 222320 4462000 2502300 2716000 2271400 3916700 4099800 3500500 3643200 3 3 2 3 3 3 3 3 3 3 3 555820000 0 555820000 21536 2286 19792 112326;112327;112328 136181;136182;136183;136184 136182 2655 4 VYVPALIFGQLLTSSNYDDDEK Unmodified 2486.2217 0.22168626 1500 Q02880;Q02880-2 TOP2B DNA topoisomerase 2-beta yes no 0 0 0 0 By MS/MS By MS/MS 6.5 1.87 1 2 2 3 5 3 82.606 82.613 3;4 9.037E-36 26857 20211116_3447_TMUAki_TMT10x_S_F8 194.92 182.62 17288000 27647000 186310 25500000 19046000 23571000 21980000 12318000 14015000 15640000 20015000 16098000 25789000 1598600 26137000 18345000 23879000 21895000 13192000 14819000 15138000 19122000 14 14 10 14 14 14 14 14 14 14 14 7934600 12476000 105550 11718000 7281800 13250000 8728600 5619900 6829500 7342900 9056300 7388700 11639000 741700 12031000 7024600 13232000 8719400 6150600 7110000 7100500 8667300 7 7 5 7 7 7 7 7 7 7 7 9352900 15170000 80763 13781000 11764000 10321000 13252000 6698100 7185100 8297400 10959000 8708900 14150000 856900 14106000 11320000 10647000 13176000 7040900 7709000 8037800 10455000 7 7 5 7 7 7 7 7 7 7 7 1511500000 921670000 589870000 21537 1500 19793 112329;112330;112331;112332;112333;112334;112335;112336 136185;136186;136187;136188;136189;136190;136191;136192;136193;136194;136195;136196;136197;136198 136196 14 VYYFNHITNASQWERPSGNSSSGGK Unmodified 2785.2845 0.28445472 1642 Q13526 PIN1 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 yes yes 0 0 0 1 By MS/MS 3 0 1 1 51.382 51.02 4 7.6374E-23 17577 20211116_3441_TMUAki_TMT10x_S_F3 154.1 144.45 1013600 1790600 30991 2483300 907000 797560 876770 726120 836470 888700 1229400 943980 1673400 111420 2459200 870790 914870 889680 746740 866670 861250 1173800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1013600 1790600 30991 2483300 907000 797560 876770 726120 836470 888700 1229400 943980 1673400 111420 2459200 870790 914870 889680 746740 866670 861250 1173800 1 1 1 1 1 1 1 1 1 1 1 205570000 0 205570000 21538 1642 19794 112337 136199 136199 1 WAELLPLLQQCQVVR Unmodified 1852.0029 0.0029238935 651 P13489 RNH1 Ribonuclease inhibitor yes yes 0 0 0 0 By MS/MS 4 0 1 1 80.304 80.28 3 9.7279E-11 27212 20211116_3442_TMUAki_TMT10x_S_F4 139.78 133.62 1324600 2672000 61486 2015100 1624700 1661200 1797500 919110 908300 1394400 1483500 1233800 2490800 171330 2096900 1565900 1697500 1786700 986170 983360 1342300 1413300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1324600 2672000 61486 2015100 1624700 1661200 1797500 919110 908300 1394400 1483500 1233800 2490800 171330 2096900 1565900 1697500 1786700 986170 983360 1342300 1413300 1 1 1 1 1 1 1 1 1 1 1 678240000 0 678240000 21539 651 19795 112338 136200 136200 1 WAEQYLK Unmodified 936.47052 0.47051757 858 P30040 ERP29 Endoplasmic reticulum resident protein 29 yes yes 0 0 0 0 By MS/MS 6 0 1 1 55.587 55.674 2 0.064556 15768 20211116_3434_TMUAki_TMT10x_P_F6 64.207 22.228 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21540 858 19796 112339 136201 136201 1 WAEYHADIYDK Unmodified 1409.6252 0.62518031 2936 Q9NRX4;Q9NRX4-2 PHPT1 14 kDa phosphohistidine phosphatase yes no 0 0 0 0 By MS/MS By MS/MS 5 0.707 1 2 1 3 1 50.665 50.826 3 4.8623E-05 14709 20211116_3431_TMUAki_TMT10x_P_F4 92.925 78.235 12002000 20195000 264160 23543000 19847000 19330000 15197000 14007000 13271000 12957000 16366000 11177000 18857000 1351100 23718000 18929000 19833000 15598000 14479000 13695000 12698000 15692000 4 4 4 4 4 4 4 4 4 4 4 5983700 9814000 136230 11429000 13893000 14125000 9233600 7963000 7114500 6951400 8204100 5572500 9163500 733840 11586000 13213000 14085000 9544100 8377000 7369200 6830800 7880400 2 2 2 2 2 2 2 2 2 2 2 6018400 10381000 127930 12114000 5953400 5205700 5963100 6044100 6156800 6005700 8161800 5604700 9693200 617280 12133000 5716400 5748200 6054100 6101800 6326100 5867000 7811400 2 2 2 2 2 2 2 2 2 2 2 690470000 447100000 243370000 21541 2936 19797 112340;112341;112342;112343 136202;136203;136204;136205;136206 136202 5 WAGLSIGQEIEVSLYTFDK Unmodified 2155.0837 0.083736214 1048 P46459 NSF Vesicle-fusing ATPase yes yes 0 0 0 0 By MS/MS 6 0 1 1 88.379 88.357 3 0.064562 29089 20211116_3434_TMUAki_TMT10x_P_F6 32.091 13.016 73714 124220 369.96 122660 82802 149340 96233 89306 86130 100490 107460 68638 115910 3091 125640 79755 149140 96598 94165 88822 97682 103000 2 2 1 2 2 2 2 2 2 2 2 73714 124220 369.96 122660 82802 149340 96233 89306 86130 100490 107460 68638 115910 3091 125640 79755 149140 96598 94165 88822 97682 103000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2497200 2497200 0 21542 1048 19798 112344 136207;136208 136207 2 WALSQSNPSALR Unmodified 1328.6837 0.68369824 1235 P55072 VCP Transitional endoplasmic reticulum ATPase yes yes 0 0 0 0 By MS/MS By MS/MS 3 2.61 2 1 1 1 2 3 50.71 50.449 2 6.631E-36 14208 20211116_3428_TMUAki_TMT10x_P_F1 251.87 218.64 10476000 18292000 35429 18300000 10239000 8365900 8703700 16699000 15906000 14783000 15662000 9754000 17069000 886930 18520000 9780200 9322600 9131700 16500000 15858000 14516000 15116000 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10476000 18292000 35429 18300000 10239000 8365900 8703700 16699000 15906000 14783000 15662000 9754000 17069000 886930 18520000 9780200 9322600 9131700 16500000 15858000 14516000 15116000 4 4 2 4 4 4 4 4 4 4 4 677930000 0 677930000 21543 1235 19799 112345;112346;112347;112348;112349 136209;136210;136211;136212;136213;136214 136209 6 WAPDGSCILTNSADNILR Unmodified 2001.9578 0.95782419 2678 Q9BUR4 WRAP53 Telomerase Cajal body protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 76.195 76.154 3 0.0086225 24583 20211116_3445_TMUAki_TMT10x_S_F6 49.924 37.156 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21544 2678 19800 112350;112351 136215;136216 136216 2 WATHGEPSPVNSHPQR Unmodified 1798.8499 0.84992873 1525 Q06210;Q06210-2 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 29.5 29.486 4 4.1301E-05 6494 20211116_3433_TMUAki_TMT10x_P_F5 85.473 79.206 206700 320410 0 339030 566200 476050 280540 256260 268370 210180 339000 192460 299050 21735 346600 535690 471580 299130 270260 276060 207170 324830 1 1 0 1 1 1 1 1 1 1 1 206700 320410 0 339030 566200 476050 280540 256260 268370 210180 339000 192460 299050 21735 346600 535690 471580 299130 270260 276060 207170 324830 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21802000 21802000 0 21545 1525 19801 112352;112353 136217 136217 1 WCEYGLTFTEK Unmodified 1432.6333 0.63330216 1034 P45880;P45880-2;P45880-1 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 5.93 1.16 2 3 4 4 1 7 7 69.959 70.071 2;3 1.535E-18 21779 20211116_3444_TMUAki_TMT10x_S_F5 221.52 185.57 143770000 224690000 2397300 267340000 142600000 146310000 151110000 80945000 60633000 89432000 144700000 133880000 209820000 13171000 267910000 137030000 155050000 150030000 85852000 68626000 86995000 136980000 18 18 12 18 18 18 18 18 18 18 18 70506000 108910000 956760 128400000 68155000 91406000 74809000 41408000 31602000 45249000 68717000 65651000 101700000 6151700 129060000 65539000 94277000 74196000 44739000 35357000 44035000 65140000 9 9 5 9 9 9 9 9 9 9 9 73267000 115780000 1440500 138940000 74443000 54903000 76305000 39537000 29031000 44183000 75979000 68227000 108120000 7019200 138850000 71487000 60770000 75838000 41113000 33268000 42960000 71841000 9 9 7 9 9 9 9 9 9 9 9 9879800000 4048800000 5831000000 21546 1034 19802 112354;112355;112356;112357;112358;112359;112360;112361;112362;112363;112364;112365;112366;112367 136218;136219;136220;136221;136222;136223;136224;136225;136226;136227;136228;136229;136230;136231;136232;136233;136234;136235;136236;136237 136229 20 WCNEHLK Unmodified 985.44399 0.44398525 755;1703;328 P21333;P21333-2;Q14315;Q14315-2;O75369;O75369-8;O75369-6;O75369-3;O75369-2;O75369-9;O75369-5;O75369-4 FLNA;FLNC;FLNB Filamin-A;Filamin-C;Filamin-B no no 0 0 0 0 By matching By MS/MS 5 0 2 1 1 35.133 35.202 3 0.028348 7550 20211116_3444_TMUAki_TMT10x_S_F5 59.8 38.898 533740 893150 0 974590 557880 429760 580060 529230 499290 483110 753290 496950 833710 43053 980350 535380 473660 584720 531690 520480 473730 718810 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 533740 893150 0 974590 557880 429760 580060 529230 499290 483110 753290 496950 833710 43053 980350 535380 473660 584720 531690 520480 473730 718810 1 1 0 1 1 1 1 1 1 1 1 43119000 30435000 12684000 21547 755;1703;328 19803 112368;112369 136238 136238 1 WDESWVQTVLPLVMDT Oxidation (M) 1933.9132 0.91316541 2655 Q9BT22;Q9BT22-2 ALG1 Chitobiosyldiphosphodolichol beta-mannosyltransferase yes no 0 0 1 0 By MS/MS 6 0 1 1 84.86 84.877 2 0.039681 28057 20211116_3445_TMUAki_TMT10x_S_F6 54.471 39.499 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21548 2655 19804 112370 136239 136239 2882 1 WDETKGEDNIDFMPTILSR Oxidation (M) 2282.0525 0.052512441 912 P33992 MCM5 DNA replication licensing factor MCM5 yes yes 0 0 1 1 By MS/MS 6 0 1 1 67.124 67.099 3 0.0052996 20474 20211116_3434_TMUAki_TMT10x_P_F6 57.989 49.802 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21549 912 19805 112371 136240 136240 1137 1 WDPTANEDPEWILVEK Unmodified 1940.9156 0.91560825 1701 Q14257;Q14257-2 RCN2 Reticulocalbin-2 yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 3 1 79.117 79.099 2;3 1.2227E-14 25940 20211116_3428_TMUAki_TMT10x_P_F1 132.47 109.59 3006500 5046400 0 4969700 3952600 3168300 4134800 3080400 2953700 2885800 3793300 2798800 4708500 197260 5048400 3790200 3336800 4148000 3130500 3086400 2826400 3633300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3006500 5046400 0 4969700 3952600 3168300 4134800 3080400 2953700 2885800 3793300 2798800 4708500 197260 5048400 3790200 3336800 4148000 3130500 3086400 2826400 3633300 1 1 0 1 1 1 1 1 1 1 1 1929600000 1198600000 730950000 21550 1701 19806 112372;112373;112374;112375 136241;136242 136241 2 WDQSTFLGR Unmodified 1108.5302 0.53015772 2710 Q9BWM7 SFXN3 Sideroflexin-3 yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 54.286 54.594 2 0.00042448 15275 20211116_3434_TMUAki_TMT10x_P_F6 88.364 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21551 2710 19807 112376;112377 136243;136244 136243 2 WDTCAPEVILHAVGGK Unmodified 1751.8665 0.86648999 449 O95861;O95861-4;O95861-2;O95861-3 BPNT1 3'(2'),5'-bisphosphate nucleotidase 1 yes no 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 75.901 76.008 3 1.4312E-07 26574 20211116_3446_TMUAki_TMT10x_S_F7 110.77 96.088 4193800 7136700 7035.7 6405800 5736100 4954400 5215900 4234600 3408400 4763100 5637600 3904700 6656600 355350 6564900 5486000 5120600 5262000 4357600 3625700 4630100 5369400 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4193800 7136700 7035.7 6405800 5736100 4954400 5215900 4234600 3408400 4763100 5637600 3904700 6656600 355350 6564900 5486000 5120600 5262000 4357600 3625700 4630100 5369400 2 2 1 2 2 2 2 2 2 2 2 253940000 0 253940000 21552 449 19808 112378;112379 136245;136246;136247 136245 3 WDYLTQVEK Unmodified 1180.5764 0.57643921 2855 Q9HB71;Q9HB71-3 CACYBP Calcyclin-binding protein yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 66.695 66.858 2 0.056454 20812 20211116_3445_TMUAki_TMT10x_S_F6 54.419 22.198 18012000 29852000 46266 32854000 25131000 28306000 20760000 15528000 13079000 15525000 20948000 16771000 27866000 1537600 33237000 23984000 28830000 21049000 16433000 13921000 15162000 19964000 3 3 1 3 3 3 3 3 3 3 3 13235000 21830000 46266 23765000 21031000 24472000 17357000 11346000 9385000 11377000 15149000 12323000 20377000 1156400 24118000 20070000 24592000 17552000 12199000 10101000 11110000 14435000 2 2 1 2 2 2 2 2 2 2 2 4777200 8021700 0 9089200 4100600 3834500 3402700 4182700 3693600 4147800 5799600 4448000 7489100 381150 9118500 3913900 4238300 3497000 4234100 3819600 4052400 5529500 1 1 0 1 1 1 1 1 1 1 1 2011700000 1472300000 539330000 21553 2855 19809 112380;112381;112382 136248;136249 136249 2 WEFKHPQPFLR Unmodified 1483.7725 0.77245367 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 1 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 50.437 50.249 4 5.1242E-09 17261 20211116_3441_TMUAki_TMT10x_S_F3 158.3 115.51 2958700 5298700 4525.7 4697300 5318300 4528400 3727700 4201400 2714800 3502100 4530400 2754600 4942000 254250 4832000 5057900 4616300 3833000 4267300 2870600 3449200 4314200 3 3 1 3 3 3 3 3 3 3 3 1012400 1861100 0 1708300 2457000 2997100 2049400 1482600 960360 1237600 1627100 942570 1736000 96216 1772800 2345100 2939800 2066400 1576500 1048300 1218800 1549000 1 1 0 1 1 1 1 1 1 1 1 1946300 3437600 4525.7 2989000 2861400 1531300 1678300 2718800 1754500 2264500 2903400 1812000 3206000 158040 3059200 2712800 1676600 1766600 2690800 1822300 2230400 2765200 2 2 1 2 2 2 2 2 2 2 2 702180000 373750000 328420000 21554 542 19810 112383;112384;112385 136250;136251;136252 136252 3 WFCHIQHYPGIR Unmodified 1612.7721 0.7721361 209 O43324 EEF1E1 Eukaryotic translation elongation factor 1 epsilon-1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 45.994 46.152 4 6.8801E-06 12813 20211116_3431_TMUAki_TMT10x_P_F4 104.43 89.558 1084500 1755400 9493.2 1994600 1759500 1728200 1235100 1316800 1322400 1220400 1558300 1009800 1638900 108210 2014000 1674500 1767800 1282900 1356700 1349900 1195900 1496000 2 2 2 2 2 2 2 2 2 2 2 583660 929140 1247.8 1060600 1169800 1299900 829960 684390 707660 618680 785010 543460 867480 57761 1076300 1113200 1295700 855840 724930 728020 606940 754880 1 1 1 1 1 1 1 1 1 1 1 500790 826240 8245.4 934020 589760 428260 405110 632450 614730 601730 773330 466350 771370 50449 937670 561350 472070 427060 631810 621840 588940 741090 1 1 1 1 1 1 1 1 1 1 1 392000000 216220000 175780000 21555 209 19811 112386;112387;112388 136253;136254 136253 2 WFEENASQSTVK Unmodified 1424.6572 0.65720872 1575 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 5 0 2 1 1 53.346 53.536 3 0.00032867 14978 20211116_3444_TMUAki_TMT10x_S_F5 82.362 68.934 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21556 1575 19812 112389;112390 136255;136256 136256 2 WFGFLEAQQAFQSVGTK Unmodified 1942.9577 0.95774784 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 80.443 80.439 3 5.1951E-08 27283 20211116_3442_TMUAki_TMT10x_S_F4 114.63 95.304 4950900 8325400 101470 8105200 6624300 8748800 6968800 5201000 3673900 5196600 6531400 4610500 7767700 528470 8293800 6366500 8793300 6948700 5467000 3983200 5075500 6212100 2 2 2 2 2 2 2 2 2 2 2 2703400 4573800 53670 4330200 3663700 6147000 4064400 3002800 2184700 3008300 3643200 2517600 4266900 287600 4461900 3526300 6079400 4043500 3211900 2356600 2937900 3469300 1 1 1 1 1 1 1 1 1 1 1 2247400 3751600 47804 3774900 2960600 2601800 2904400 2198200 1489200 2188300 2888200 2092900 3500700 240870 3831800 2840300 2713900 2905200 2255100 1626600 2137600 2742800 1 1 1 1 1 1 1 1 1 1 1 1467100000 845830000 621260000 21557 542 19813 112391;112392;112393 136257;136258;136259 136259 3 WFHPNITGVEAENLLLTR Unmodified 2109.1007 0.10072368 1523 Q06124;Q06124-3;Q06124-1 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 76.463 76.429 3 1.3669E-40 24929 20211116_3436_TMUAki_TMT10x_P_F8 200.67 182.71 4121200 6715900 27092 6312800 4213600 6156700 4658800 3554900 3427500 3898900 4770500 3837100 6265100 323860 6466300 4050100 6223200 4664200 3756000 3588400 3793700 4560400 2 2 1 2 2 2 2 2 2 2 2 2424700 3542800 27092 3290000 1812800 4049800 2396300 1607500 1802600 2027400 2372700 2257900 3304800 217700 3385600 1754500 4023900 2381800 1770200 1880100 1962700 2271200 1 1 1 1 1 1 1 1 1 1 1 1696500 3173100 0 3022800 2400800 2107000 2262500 1947400 1624900 1871500 2397900 1579200 2960300 106160 3080700 2295600 2199300 2282400 1985800 1708300 1830900 2289200 1 1 0 1 1 1 1 1 1 1 1 2065100000 873350000 1191800000 21558 1523 19814 112394;112395 136260;136261 136260 2 WFLTCINQPQFR Unmodified 1608.7871 0.78711746 821 P26641;P26641-2 EEF1G Elongation factor 1-gamma yes no 0 0 0 0 By MS/MS By MS/MS 5.56 1.06 3 5 4 4 8 8 77.312 77.325 2;3 2.7831E-24 25849 20211116_3433_TMUAki_TMT10x_P_F5 251.53 224.85 151700000 251120000 622210 250100000 150670000 157380000 159160000 71075000 53444000 83109000 143600000 141230000 234320000 11039000 253830000 144590000 164100000 157730000 76980000 62195000 80673000 135730000 17 17 9 17 17 17 17 17 17 17 17 78819000 124510000 364340 118270000 75395000 106960000 84586000 40582000 30513000 47753000 74021000 73384000 116160000 5941100 120930000 72488000 108170000 83644000 44826000 34952000 46342000 70058000 11 11 6 11 11 11 11 11 11 11 11 72878000 126610000 257860 131830000 75276000 50421000 74579000 30492000 22931000 35357000 69578000 67849000 118160000 5098400 132900000 72097000 55939000 74086000 32154000 27243000 34331000 65676000 6 6 3 6 6 6 6 6 6 6 6 24837000000 12311000000 12526000000 21559 821 19815 112396;112397;112398;112399;112400;112401;112402;112403;112404;112405;112406;112407;112408;112409;112410;112411 136262;136263;136264;136265;136266;136267;136268;136269;136270;136271;136272;136273;136274;136275;136276;136277;136278;136279;136280;136281 136264 20 WFNGQPIHAELSPVTDFR Unmodified 2113.0381 0.038123426 597 Q01081;P0DN76;Q01081-2;Q01081-4 U2AF1 Splicing factor U2AF 35 kDa subunit yes no 0 0 0 0 By MS/MS By MS/MS 7.17 0.687 1 3 2 3 3 68.619 68.754 2;3 2.4714E-40 23075 20211116_3435_TMUAki_TMT10x_P_F7 194.86 175.66 203290000 339800000 64975 305950000 240200000 360490000 234870000 206040000 202320000 220050000 251750000 189250000 316950000 12760000 315330000 229970000 360410000 237510000 217700000 209010000 214340000 241320000 9 9 1 9 9 9 9 9 9 9 9 155500000 255580000 0 228890000 175700000 308290000 182360000 157420000 154920000 164090000 196460000 144770000 238380000 10706000 236580000 168470000 305770000 183780000 167870000 160280000 159980000 188230000 5 5 0 5 5 5 5 5 5 5 5 47787000 84227000 64975 77064000 64502000 52203000 52504000 48621000 47403000 55965000 55289000 44489000 78566000 2053900 78752000 61497000 54634000 53726000 49835000 48727000 54356000 53091000 4 4 1 4 4 4 4 4 4 4 4 12102000000 6194300000 5907400000 21560 597 19816 112412;112413;112414;112415;112416;112417 136282;136283;136284;136285;136286;136287;136288;136289;136290;136291 136284 10 WFQQKYDGIILPGK Unmodified 1691.9035 0.90352742 1383 P62913;P62913-2 RPL11 60S ribosomal protein L11 yes no 0 0 0 1 By MS/MS By MS/MS 3.8 0.4 1 4 3 2 71.463 71.379 3;4 1.9153E-09 23062 20211116_3431_TMUAki_TMT10x_P_F4 133.14 112.4 34299000 55953000 163990 47840000 33488000 54951000 38010000 30486000 30068000 36392000 36170000 31935000 52180000 2708200 49484000 32216000 54992000 38073000 32408000 31153000 35299000 34703000 6 6 3 6 6 6 6 6 6 6 6 17832000 28727000 19655 24621000 20057000 33747000 23418000 16775000 16942000 19579000 20260000 16601000 26790000 1268400 25544000 19300000 33435000 23378000 17996000 17637000 19007000 19441000 3 3 1 3 3 3 3 3 3 3 3 16467000 27226000 144340 23219000 13432000 21204000 14591000 13711000 13126000 16813000 15911000 15334000 25389000 1439800 23940000 12916000 21557000 14695000 14412000 13516000 16293000 15262000 3 3 2 3 3 3 3 3 3 3 3 3807300000 2192900000 1614400000 21561 1383 19817 112418;112419;112420;112421;112422 136292;136293;136294;136295;136296;136297 136293 6 WFVTCVR Unmodified 966.47456 0.47455709 820 P26640 VARS Valine--tRNA ligase yes yes 0 0 0 0 By MS/MS 4 0 1 1 57.267 57.411 2 0.0074363 17407 20211116_3431_TMUAki_TMT10x_P_F4 132.96 107.4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21562 820 19818 112423 136298 136298 1 WGDAGAEYVVESTGVFTTMEK Oxidation (M) 2292.0256 0.025628988 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 1 0 By MS/MS By MS/MS 4.41 1.33 2 9 17 37 26 28 3 63 59 84.297 84.29 2;3;4 9.8857E-19 26209 20211116_3433_TMUAki_TMT10x_P_F5 146.79 132.34 171380000 301990000 877640 233890000 183450000 253030000 213590000 142920000 132580000 178290000 208100000 159560000 281540000 12635000 243700000 176550000 254120000 212570000 151930000 141100000 172670000 198400000 112 112 54 112 112 112 112 112 112 112 112 77669000 132320000 482550 102530000 69999000 145430000 90738000 62675000 55796000 81453000 92507000 72314000 123350000 5861600 107340000 67611000 143650000 89873000 68462000 59595000 78778000 88101000 56 56 31 56 56 56 56 56 56 56 56 93709000 169680000 395080 131360000 113450000 107600000 122850000 80246000 76785000 96837000 115590000 87242000 158180000 6773300 136360000 108940000 110470000 122690000 83466000 81508000 93892000 110300000 56 56 23 56 56 56 56 56 56 56 56 71218000000 36885000000 34333000000 21563 489 19819 112424;112425;112426;112427;112428;112429;112430;112431;112432;112433;112434;112435;112436;112437;112438;112439;112440;112441;112442;112443;112444;112445;112446;112447;112448;112449;112450;112451;112452;112453;112454;112455;112456;112457;112458;112459;112460;112461;112462;112463;112464;112465;112466;112467;112468;112469;112470;112471;112472;112473;112474;112475;112476;112477;112478;112479;112480;112481;112482;112483;112484;112485;112486;112487;112488;112489;112490;112491;112492;112493;112494;112495;112496;112497;112498;112499;112500;112501;112502;112503;112504;112505;112506;112507;112508;112509;112510;112511;112512;112513;112514;112515;112516;112517;112518;112519;112520;112521;112522;112523;112524;112525;112526;112527;112528;112529;112530;112531;112532;112533;112534;112535;112536;112537;112538;112539;112540;112541;112542;112543;112544;112545 136299;136300;136301;136302;136303;136304;136305;136306;136307;136308;136309;136310;136311;136312;136313;136314;136315;136316;136317;136318;136319;136320;136321;136322;136323;136324;136325;136326;136327;136328;136329;136330;136331;136332;136333;136334;136335;136336;136337;136338;136339;136340;136341;136342;136343;136344;136345;136346;136347;136348;136349;136350;136351;136352;136353;136354;136355;136356;136357;136358;136359;136360;136361;136362;136363;136364;136365;136366;136367;136368;136369;136370;136371;136372;136373;136374;136375;136376;136377;136378;136379;136380;136381;136382;136383;136384;136385;136386;136387;136388;136389;136390;136391;136392;136393;136394;136395;136396;136397;136398;136399;136400;136401;136402;136403;136404;136405;136406;136407;136408;136409;136410;136411;136412;136413;136414;136415;136416;136417;136418;136419;136420;136421;136422;136423;136424;136425;136426;136427;136428;136429;136430;136431;136432;136433;136434;136435;136436;136437;136438;136439 136347 387 141 WGDAGAEYVVESTGVFTTMEK Unmodified 2276.0307 0.030714366 489 P04406;P04406-2 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 0 By MS/MS By MS/MS 4.58 1.61 1 9 11 22 17 14 8 3 44 41 87.138 87.126 2;3 2.1302E-67 25534 20211116_3434_TMUAki_TMT10x_P_F6 243.49 215.83 138640000 246040000 5081600 224580000 159640000 154200000 177430000 89761000 81305000 101660000 161300000 129120000 229500000 15792000 229580000 153800000 159980000 176070000 94871000 89759000 98799000 153120000 65 65 40 65 65 65 65 65 65 65 65 59913000 99647000 1623300 92023000 60150000 87231000 71198000 38374000 33911000 44189000 65519000 55796000 92953000 6369000 94345000 58044000 88063000 70487000 41656000 37252000 42918000 62225000 39 39 26 39 39 39 39 39 39 39 39 78731000 146390000 3458200 132560000 99492000 66971000 106240000 51387000 47394000 57474000 95779000 73329000 136550000 9423400 135230000 95753000 71921000 105590000 53216000 52507000 55881000 90896000 26 26 14 26 26 26 26 26 26 26 26 30780000000 12240000000 18541000000 21564 489 19819 112546;112547;112548;112549;112550;112551;112552;112553;112554;112555;112556;112557;112558;112559;112560;112561;112562;112563;112564;112565;112566;112567;112568;112569;112570;112571;112572;112573;112574;112575;112576;112577;112578;112579;112580;112581;112582;112583;112584;112585;112586;112587;112588;112589;112590;112591;112592;112593;112594;112595;112596;112597;112598;112599;112600;112601;112602;112603;112604;112605;112606;112607;112608;112609;112610;112611;112612;112613;112614;112615;112616;112617;112618;112619;112620;112621;112622;112623;112624;112625;112626;112627;112628;112629;112630 136440;136441;136442;136443;136444;136445;136446;136447;136448;136449;136450;136451;136452;136453;136454;136455;136456;136457;136458;136459;136460;136461;136462;136463;136464;136465;136466;136467;136468;136469;136470;136471;136472;136473;136474;136475;136476;136477;136478;136479;136480;136481;136482;136483;136484;136485;136486;136487;136488;136489;136490;136491;136492;136493;136494;136495;136496;136497;136498;136499;136500;136501;136502;136503;136504;136505;136506;136507;136508;136509;136510;136511;136512;136513;136514;136515;136516;136517;136518;136519;136520;136521;136522;136523;136524;136525;136526;136527;136528;136529;136530;136531;136532;136533;136534;136535;136536 136484 97 WGDEHIPGSPYR Unmodified 1412.6473 0.64731274 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 44.228 44.38 3 1.1425E-05 12372 20211116_3433_TMUAki_TMT10x_P_F5 99.506 73.947 8927300 14770000 41695 17892000 14580000 14282000 10165000 10672000 11600000 9227400 12982000 8311900 13794000 789640 17978000 13867000 14692000 10586000 10990000 11787000 9071500 12481000 5 5 1 5 5 5 5 5 5 5 5 3932100 6470400 41695 8153100 10312000 10446000 6213500 4889800 5527800 4274700 5953100 3661300 6043900 427960 8232900 9785000 10375000 6495700 5233600 5668700 4200200 5729600 2 2 1 2 2 2 2 2 2 2 2 4995200 8299600 0 9738500 4268100 3837000 3951800 5782400 6072400 4952700 7029400 4650600 7749800 361680 9745000 4081700 4316600 4090700 5756100 6118800 4871300 6751300 3 3 0 3 3 3 3 3 3 3 3 1065300000 473490000 591760000 21565 755 19820 112631;112632;112633;112634;112635 136537;136538;136539;136540;136541;136542;136543 136540 7 WGDIEFPPPFGR Unmodified 1416.6826 0.68263561 1200 P53396;P53396-2 ACLY ATP-citrate synthase yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 79.122 79.145 2 0.00037528 27892 20211116_3446_TMUAki_TMT10x_S_F7 89.609 75.374 32374000 51389000 650640 51230000 35085000 41688000 39054000 24760000 21530000 27196000 37002000 30149000 47951000 3328400 52131000 33781000 42677000 38865000 26102000 23219000 26461000 35216000 5 5 5 5 5 5 5 5 5 5 5 17409000 26914000 518520 26566000 16453000 27245000 20164000 13479000 12179000 15267000 19601000 16214000 25112000 1913200 27136000 15901000 27404000 20012000 14453000 13003000 14837000 18678000 3 3 3 3 3 3 3 3 3 3 3 14965000 24475000 132120 24664000 18632000 14443000 18891000 11281000 9351600 11929000 17402000 13935000 22838000 1415200 24995000 17880000 15273000 18853000 11649000 10217000 11624000 16538000 2 2 2 2 2 2 2 2 2 2 2 2265400000 591810000 1673600000 21566 1200 19821 112636;112637;112638 136544;136545;136546;136547;136548 136547 5 WGDPVTR Unmodified 829.40825 0.40825167 1048 P46459;P46459-2 NSF Vesicle-fusing ATPase yes no 0 0 0 0 By MS/MS 4 0 1 1 37.809 37.966 2 0.079765 9990 20211116_3442_TMUAki_TMT10x_S_F4 58.981 42.827 392150 621860 5924.5 673200 429240 332300 408900 394620 356970 355140 562850 365180 580460 38553 678050 411430 360950 414220 396900 372730 348470 536590 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 392150 621860 5924.5 673200 429240 332300 408900 394620 356970 355140 562850 365180 580460 38553 678050 411430 360950 414220 396900 372730 348470 536590 1 1 1 1 1 1 1 1 1 1 1 11854000 0 11854000 21567 1048 19822 112639 136549 136549 1 WGDYDSHDIER Unmodified 1391.5742 0.57420737 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 By MS/MS 2 0 1 1 40.154 39.894 3 5.5247E-12 11477 20211116_3429_TMUAki_TMT10x_P_F2 138.63 133.65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21568 1997 19823 112640 136550 136550 1 WGLGGTCVNVGCIPK Unmodified 1616.7803 0.78031752 1871 Q16881;Q16881-3;Q16881-4;Q16881-5;Q16881-2;Q16881-6;Q16881-7;Q9NNW7;Q9NNW7-2 TXNRD1;TXNRD2 Thioredoxin reductase 1, cytoplasmic;Thioredoxin reductase 2, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 2.33 0.667 1 4 4 5 4 68.249 67.97 2;3 1.538E-33 23446 20211116_3430_TMUAki_TMT10x_P_F3 231.42 192.64 73031000 118450000 264240 120920000 89188000 106500000 94541000 52800000 40218000 62201000 80765000 67998000 110540000 6231500 122970000 85649000 108180000 93935000 56675000 44730000 60362000 76656000 13 13 8 13 13 13 13 13 13 13 13 47883000 75588000 176720 78417000 55557000 82978000 64982000 33022000 25933000 40420000 50080000 44584000 70542000 4011200 79867000 53503000 83129000 64212000 36317000 28948000 39171000 47563000 8 8 5 8 8 8 8 8 8 8 8 25147000 42863000 87517 42503000 33632000 23521000 29559000 19778000 14285000 21782000 30685000 23415000 39994000 2220300 43101000 32146000 25048000 29723000 20358000 15782000 21190000 29093000 5 5 3 5 5 5 5 5 5 5 5 8189000000 4496900000 3692200000 21569 1871 19824 112641;112642;112643;112644;112645;112646;112647;112648;112649 136551;136552;136553;136554;136555;136556;136557;136558;136559;136560;136561;136562;136563 136556 13 WGPNHAADPIITR Unmodified 1446.7368 0.73679645 2704 Q9BW91;Q9BW91-2 NUDT9 ADP-ribose pyrophosphatase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 40.246 40.343 3 0.010769 9805 20211116_3445_TMUAki_TMT10x_S_F6 56.29 35.986 2551800 4478300 19487 4890900 5390300 6603700 3552000 3237000 3386600 3423200 3912700 2376100 4180300 269480 4986000 5123500 6546100 3693900 3466600 3471200 3335600 3758100 2 2 2 2 2 2 2 2 2 2 2 1952300 3509000 13716 3813000 4717400 6091900 2919300 2628800 2739600 2865800 3137900 1817900 3275400 213370 3902500 4478900 5987600 3049600 2854600 2809100 2789100 3014700 1 1 1 1 1 1 1 1 1 1 1 599460 969310 5771.2 1077900 672920 511820 632630 608170 647020 557360 774780 558200 904870 56107 1083500 644570 558480 644260 611970 662140 546440 743450 1 1 1 1 1 1 1 1 1 1 1 154360000 92058000 62300000 21570 2704 19825 112650;112651 136564;136565 136565 2 WGRDDIENIAR Unmodified 1343.6582 0.65821178 260 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 0 0 0 1 By MS/MS By MS/MS 4.33 0.745 1 2 3 4 2 44.332 44.449 3 9.7157E-15 11351 20211116_3444_TMUAki_TMT10x_S_F5 160.56 123.89 6127000 9172000 46567 11788000 14019000 11600000 8335000 4453600 4561500 4517800 7171000 5705100 8568200 657320 11838000 13301000 11668000 8634900 4890700 4898300 4409700 6836800 3 3 1 3 3 3 3 3 3 3 3 6127000 9172000 46567 11788000 14019000 11600000 8335000 4453600 4561500 4517800 7171000 5705100 8568200 657320 11838000 13301000 11668000 8634900 4890700 4898300 4409700 6836800 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1848600000 1161000000 687610000 21571 260 19826 112652;112653;112654;112655;112656;112657 136566;136567;136568;136569;136570 136570 5 WGTLTDCVVMR Oxidation (M) 1352.6217 0.62169161 1168;1169 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 1 0 By MS/MS By MS/MS 7 0 2 1 1 56.583 57.212 2 0.10603 18184 20211116_3435_TMUAki_TMT10x_P_F7 50.04 38.447 23670000 35248000 44946 46328000 24043000 22825000 21049000 16195000 14212000 17207000 26348000 22039000 32932000 1913600 46129000 22975000 24553000 21296000 16831000 15188000 16764000 25042000 3 3 1 3 3 3 3 3 3 3 3 7781600 10651000 0 12988000 12171000 12662000 9276300 5884300 5138700 5736700 8365600 7245100 9947500 673540 13080000 11595000 12767000 9432600 6320400 5523400 5608800 7970100 1 1 0 1 1 1 1 1 1 1 1 15888000 24597000 44946 33340000 11873000 10163000 11773000 10311000 9073400 11471000 17983000 14793000 22984000 1240100 33049000 11380000 11786000 11863000 10511000 9664800 11155000 17071000 2 2 1 2 2 2 2 2 2 2 2 2337400000 1282200000 1055100000 21572 1168;1169 19827 112658;112659 136571 136571 1556 1 WGTLTDCVVMR Unmodified 1336.6268 0.62677699 1168;1169 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 63.896 64.077 2 8.2669E-15 19286 20211116_3447_TMUAki_TMT10x_S_F8 168 146.25 3508700 5115900 50614 5470000 4012700 5553300 4264400 2580900 2230500 2314400 3589300 3267300 4775000 345120 5556500 3857000 5585400 4249500 2766100 2406400 2271400 3420400 1 1 1 1 1 1 1 1 1 1 1 3508700 5115900 50614 5470000 4012700 5553300 4264400 2580900 2230500 2314400 3589300 3267300 4775000 345120 5556500 3857000 5585400 4249500 2766100 2406400 2271400 3420400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 368210000 368210000 0 21573 1168;1169 19827 112660;112661 136572;136573 136573 2 WGTLTDCVVMRDPQTK Unmodified 1905.9077 0.90770288 1168;1169 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 0 1 By MS/MS By MS/MS 7.33 0.745 1 2 3 3 3 58.782 59.027 3;4 4.013E-43 17235 20211116_3447_TMUAki_TMT10x_S_F8 233.14 209.29 102610000 157990000 675080 227770000 111410000 75139000 104220000 30899000 25370000 39694000 98956000 95544000 147680000 9225700 225150000 106690000 84967000 103650000 33912000 31871000 38405000 93182000 7 7 6 7 7 7 7 7 7 7 7 40176000 60169000 167830 88039000 63826000 45372000 51463000 13886000 11906000 17314000 36678000 37408000 56248000 3784700 87208000 60896000 48146000 51623000 15810000 14722000 16769000 34615000 3 3 2 3 3 3 3 3 3 3 3 62434000 97820000 507250 139730000 47587000 29767000 52755000 17013000 13464000 22380000 62278000 58136000 91433000 5441000 137940000 45789000 36821000 52025000 18102000 17149000 21636000 58566000 4 4 4 4 4 4 4 4 4 4 4 9867400000 5076900000 4790500000 21574 1168;1169 19828 112662;112663;112664;112665;112666;112667 136574;136575;136576;136577;136578;136579;136580 136578 7 WGTLTDCVVMRDPQTK Oxidation (M) 1921.9026 0.9026175 1168;1169 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 1 1 By MS/MS By MS/MS 7.38 0.696 1 3 4 3 5 53.097 53.332 3;4 3.1413E-05 14918 20211116_3447_TMUAki_TMT10x_S_F8 92.265 73.19 76024000 133430000 637680 157860000 98512000 94798000 70972000 74663000 66556000 73689000 101670000 70788000 124590000 6934100 158380000 93786000 100010000 73293000 76899000 69148000 72009000 96992000 12 12 7 12 12 12 12 12 12 12 12 28374000 48296000 83746 56884000 58322000 61803000 38349000 25426000 22735000 25466000 35676000 26418000 45097000 2660300 57498000 55413000 61840000 39460000 27688000 24271000 24870000 34014000 4 4 2 4 4 4 4 4 4 4 4 47650000 85133000 553930 100980000 40189000 32995000 32623000 49238000 43821000 48223000 65996000 44370000 79497000 4273800 100880000 38373000 38171000 33834000 49211000 44877000 47139000 62978000 8 8 5 8 8 8 8 8 8 8 8 8342300000 3921500000 4420800000 21575 1168;1169 19828 112668;112669;112670;112671;112672;112673;112674;112675 136581;136582;136583;136584;136585;136586;136587;136588;136589;136590;136591;136592 136589 1556 12 WGTLTDCVVMRDPQTKR Unmodified 2062.0088 0.0088139074 1168;1169 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 0 2 By MS/MS By matching 2 0.816 1 1 1 2 1 51.718 51.51 4 1.5303E-07 16196 20211116_3429_TMUAki_TMT10x_P_F2 112.12 97.193 9246400 12001000 74690 13393000 15367000 15606000 11766000 6419200 5075600 6002400 9649500 8608800 11203000 787360 13597000 14640000 15555000 11916000 6977700 5618600 5879500 9167000 2 2 1 2 2 2 2 2 2 2 2 9246400 12001000 74690 13393000 15367000 15606000 11766000 6419200 5075600 6002400 9649500 8608800 11203000 787360 13597000 14640000 15555000 11916000 6977700 5618600 5879500 9167000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1426000000 1256900000 169110000 21576 1168;1169 19829 112676;112677;112678 136593;136594 136594 2 WGTLTDCVVMRDPQTKR Oxidation (M) 2078.0037 0.0037285295 1168;1169 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 1 2 By MS/MS By MS/MS 4.5 3.5 1 1 1 1 46.592 46.536 4 0.0033248 12692 20211116_3436_TMUAki_TMT10x_P_F8 60.209 44.267 2679300 4504000 15635 4417500 4670100 5979500 3660000 5140900 4135900 4375200 4328600 2494700 4202400 252480 4536000 4452700 5976300 3780100 5246300 4193600 4304600 4169700 2 2 1 2 2 2 2 2 2 2 2 1629700 2686300 15635 2615000 3463800 4917200 2777500 3108000 2463300 2493500 2554900 1517600 2506300 175370 2707200 3304900 4826600 2843500 3232900 2523000 2460600 2461800 1 1 1 1 1 1 1 1 1 1 1 1049600 1817700 0 1802500 1206300 1062300 882570 2032900 1672600 1881700 1773700 977140 1696000 77107 1828900 1147800 1149700 936610 2013400 1670600 1844000 1707900 1 1 0 1 1 1 1 1 1 1 1 659190000 283300000 375890000 21577 1168;1169 19829 112679;112680 136595;136596 136595 1556 2 WGYSSTAITR Unmodified 1140.5564 0.55637247 604 P10253 GAA Lysosomal alpha-glucosidase;76 kDa lysosomal alpha-glucosidase;70 kDa lysosomal alpha-glucosidase yes yes 0 0 0 0 By MS/MS 1 0 1 1 44.942 44.942 2 0.0011908 11993 20211116_3428_TMUAki_TMT10x_P_F1 93.467 73.871 846160 1410000 15515 1785500 2472800 2258000 1386000 1068400 1022800 895120 1344100 787980 1317100 107400 1802100 2344700 2244400 1451500 1141100 1067800 881360 1286600 1 1 1 1 1 1 1 1 1 1 1 846160 1410000 15515 1785500 2472800 2258000 1386000 1068400 1022800 895120 1344100 787980 1317100 107400 1802100 2344700 2244400 1451500 1141100 1067800 881360 1286600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 93108000 93108000 0 21578 604 19830 112681 136597 136597 1 WHEEVEIYR Unmodified 1259.5935 0.59348625 42 CON__P15497 yes yes 0 0 0 0 By MS/MS By MS/MS 2.56 1.07 2 2 3 2 5 4 41.769 41.704 3 2.0993E-06 12335 20211116_3430_TMUAki_TMT10x_P_F3 160.59 143.15 + 5216100 8178300 40664 8155800 7387600 7141900 5904100 7407800 7686000 7154400 7776200 4856700 7631100 461940 8306600 7046200 7344200 6121500 7510700 7744400 6997800 7498600 9 9 6 9 9 9 9 9 9 9 9 1768000 2614400 16490 2627800 4184000 4307100 2776200 2632800 2672900 2558000 2507300 1646300 2439500 192010 2704900 3977200 4246600 2886400 2759100 2717800 2501300 2423800 3 3 2 3 3 3 3 3 3 3 3 3448100 5563900 24174 5528000 3203600 2834800 3127900 4775000 5013100 4596400 5268900 3210400 5191600 269930 5601700 3069100 3097600 3235100 4751600 5026600 4496500 5074800 6 6 4 6 6 6 6 6 6 6 6 909460000 450300000 459160000 21579 42 19831 112682;112683;112684;112685;112686;112687;112688;112689;112690 136598;136599;136600;136601;136602;136603;136604;136605;136606;136607;136608 136601 11 WHPGAHVGVGK Unmodified 1143.5938 0.59376103 3052 Q9P0M9 MRPL27 39S ribosomal protein L27, mitochondrial yes yes 0 0 0 0 By MS/MS 1 0 1 1 33.143 33.154 4 0.0091397 9195 20211116_3439_TMUAki_TMT10x_S_F1 61.161 43.931 529400 880430 6307.2 776050 665170 519920 702180 581870 486530 458150 688440 492980 821150 51671 795240 639110 546850 703640 584780 511560 452550 657870 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 529400 880430 6307.2 776050 665170 519920 702180 581870 486530 458150 688440 492980 821150 51671 795240 639110 546850 703640 584780 511560 452550 657870 1 1 1 1 1 1 1 1 1 1 1 21171000 0 21171000 21580 3052 19832 112691 136609 136609 1 WIDDVRTER Unmodified 1188.5887 0.58873523 742;743 P20340;Q9NRW1;Q9NRW1-2;P20340-2;P20340-4;Q9H0N0 RAB6A;RAB6B;RAB6C Ras-related protein Rab-6A;Ras-related protein Rab-6B;Ras-related protein Rab-6C no no 0 0 0 1 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 38.568 38.541 3 0.0011567 12820 20211116_3441_TMUAki_TMT10x_S_F3 88.496 64.939 3137900 5306700 17127 5561100 3926300 3095100 3514700 3748400 2576400 3514100 4945200 2921700 4952700 278800 5618400 3754800 3319900 3557500 3771100 2746100 3441700 4697200 3 3 2 3 3 3 3 3 3 3 3 376810 631860 0 610500 646150 633830 406600 267110 330290 337650 452000 350780 589510 26658 624670 612990 636020 422600 292200 343670 326860 432260 1 1 0 1 1 1 1 1 1 1 1 2761100 4674900 17127 4950600 3280100 2461300 3108000 3481300 2246100 3176400 4493200 2571000 4363200 252140 4993800 3141800 2683900 3134900 3478900 2402500 3114800 4264900 2 2 2 2 2 2 2 2 2 2 2 62931000 7689000 55242000 21581 742;743 19833 112692;112693;112694 136610;136611 136611 2 WIFVGGK Unmodified 805.44866 0.44865992 233 O43681 ASNA1 ATPase ASNA1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 66.921 66.612 2 0.0024249 23967 20211116_3441_TMUAki_TMT10x_S_F3 126.05 89.651 5116000 8846600 3514.4 9490800 5969600 4267400 5284400 3872900 3213000 4158300 6213100 4763600 8257200 439380 9558600 5706900 4660700 5331900 3966200 3465800 4049500 5900700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5116000 8846600 3514.4 9490800 5969600 4267400 5284400 3872900 3213000 4158300 6213100 4763600 8257200 439380 9558600 5706900 4660700 5331900 3966200 3465800 4049500 5900700 1 1 1 1 1 1 1 1 1 1 1 616890000 130520000 486360000 21582 233 19834 112695;112696;112697;112698 136612;136613 136613 2 WIGLDLSNGKPR Unmodified 1354.7357 0.73573382 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 1 By MS/MS By MS/MS 2.5 0.957 1 2 2 1 3 3 58.796 58.567 3 5.9571E-17 19078 20211116_3429_TMUAki_TMT10x_P_F2 211.26 181.46 37274000 57447000 394770 63870000 51270000 50222000 41452000 30317000 27961000 31263000 42662000 34706000 53628000 3393600 64500000 48920000 51557000 42143000 31857000 29558000 30494000 40700000 5 5 4 5 5 5 5 5 5 5 5 22054000 32466000 181250 36606000 37096000 38930000 28702000 17722000 15893000 17887000 24347000 20534000 30309000 1947400 37086000 35353000 39039000 29156000 19094000 17029000 17462000 23225000 3 3 2 3 3 3 3 3 3 3 3 15220000 24981000 213520 27264000 14174000 11292000 12751000 12595000 12068000 13377000 18316000 14173000 23319000 1446200 27414000 13567000 12518000 12987000 12764000 12529000 13032000 17475000 2 2 2 2 2 2 2 2 2 2 2 5806500000 2926800000 2879700000 21583 712 19835 112699;112700;112701;112702;112703;112704 136614;136615;136616;136617;136618;136619 136615 6 WIRLFSQFCNK Unmodified 1497.7551 0.75508905 1973 Q6GMV2 SMYD5 SET and MYND domain-containing protein 5 yes yes 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 35.818 35.812 3 0.10438 9019 20211116_3433_TMUAki_TMT10x_P_F5 34.887 3.6595 1887600 2730400 4489.7 3910600 7010400 4945000 2767300 2325700 2966000 1923000 2911000 1757400 2552100 219430 3921500 6614700 4915000 3035000 2484700 3006700 1894600 2809800 2 2 1 2 2 2 2 2 2 2 2 1887600 2730400 4489.7 3910600 7010400 4945000 2767300 2325700 2966000 1923000 2911000 1757400 2552100 219430 3921500 6614700 4915000 3035000 2484700 3006700 1894600 2809800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 302560000 302560000 0 21584 1973 19836 112705;112706 136620 136620 1 WISLTNFISEATVEK Unmodified 1736.8985 0.89850163 3258 Q9Y312 AAR2 Protein AAR2 homolog yes yes 0 0 0 0 By MS/MS 8 0 1 1 80.735 80.732 3 0.07804 26090 20211116_3447_TMUAki_TMT10x_S_F8 35.832 18.952 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21585 3258 19837 112707 136621 136621 1 WITAKEDDLNSFNATDLK Unmodified 2080.0113 0.011299553 589 P09960;P09960-2;P09960-4;P09960-3 LTA4H Leukotriene A-4 hydrolase yes no 0 0 0 1 By MS/MS 6 0 1 1 71.113 71.024 3 1.1712E-05 22443 20211116_3445_TMUAki_TMT10x_S_F6 82.859 72.802 6289700 10154000 26739 10448000 7555800 5192500 5901400 3685400 3160800 4230200 7407500 5856500 9475800 564110 10559000 7204900 5580100 5987700 3839500 3486200 4109000 7014300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6289700 10154000 26739 10448000 7555800 5192500 5901400 3685400 3160800 4230200 7407500 5856500 9475800 564110 10559000 7204900 5580100 5987700 3839500 3486200 4109000 7014300 1 1 1 1 1 1 1 1 1 1 1 443490000 0 443490000 21586 589 19838 112708 136622 136622 1 WIVPGGGMEPEEEPGGAAVR Oxidation (M) 2052.9575 0.95748984 2470 Q96G61;Q8NFP7 NUDT11;NUDT10 Diphosphoinositol polyphosphate phosphohydrolase 3-beta;Diphosphoinositol polyphosphate phosphohydrolase 3-alpha yes no 0 0 1 0 By matching By MS/MS 3.5 0.5 1 1 1 1 57.835 57.682 3 6.0656E-05 18028 20211116_3442_TMUAki_TMT10x_S_F4 72.489 58.81 3023400 5280300 96521 4691500 4377000 3297600 2943200 4755000 3840600 4281700 4524100 2815800 4924900 357440 4806800 4166500 3478100 3088100 4746900 3892200 4201200 4343000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3023400 5280300 96521 4691500 4377000 3297600 2943200 4755000 3840600 4281700 4524100 2815800 4924900 357440 4806800 4166500 3478100 3088100 4746900 3892200 4201200 4343000 2 2 1 2 2 2 2 2 2 2 2 542360000 294060000 248300000 21587 2470 19839 112709;112710 136623;136624 136624 2764 2 WIYEDVER Unmodified 1108.5189 0.51892433 252 O43852;O43852-3;O43852-10;O43852-6;O43852-5;O43852-13;O43852-14;O43852-11 CALU Calumenin yes no 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 54.991 54.801 2 0.00030509 19098 20211116_3441_TMUAki_TMT10x_S_F3 187.34 161.44 34651000 58235000 232140 65339000 45655000 44139000 35306000 33420000 29742000 32870000 45430000 32265000 54366000 3189800 65838000 43526000 46032000 36181000 34504000 31057000 32125000 43339000 9 9 6 9 9 9 9 9 9 9 9 12388000 19644000 63194 22501000 21702000 25052000 15881000 10935000 9986300 11238000 15023000 11535000 18341000 1216400 22791000 20666000 25047000 16231000 11839000 10596000 10963000 14337000 3 3 3 3 3 3 3 3 3 3 3 22263000 38590000 168940 42838000 23953000 19086000 19424000 22486000 19756000 21632000 30407000 20730000 36025000 1973400 43046000 22860000 20985000 19950000 22665000 20461000 21162000 29003000 6 6 3 6 6 6 6 6 6 6 6 3806600000 2138500000 1668100000 21588 252 19840 112711;112712;112713;112714;112715;112716;112717;112718 136625;136626;136627;136628;136629;136630;136631;136632;136633;136634 136631 10 WKCEQLIR Unmodified 1131.5859 0.58589846 1727 Q14691 GINS1 DNA replication complex GINS protein PSF1 yes yes 0 0 0 1 By MS/MS 3 0 1 1 40.784 40.838 3 0.096992 12257 20211116_3430_TMUAki_TMT10x_P_F3 44.447 17.476 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21589 1727 19841 112719 136635 136635 1 WKDSDEADLVLAK Unmodified 1488.746 0.74602373 1607 Q13185 CBX3 Chromobox protein homolog 3 yes yes 0 0 0 1 By MS/MS By MS/MS 4.71 1.03 1 2 2 2 4 3 59.828 59.844 3 1.4283E-09 18910 20211116_3442_TMUAki_TMT10x_S_F4 136.17 97.802 174710000 268340000 2076400 331920000 240690000 252180000 181080000 126120000 116230000 133290000 209440000 162680000 250630000 16485000 332930000 229380000 257780000 184790000 134810000 123860000 129890000 199150000 9 9 6 9 9 8 8 8 8 8 9 114120000 174040000 1250500 209740000 196860000 215760000 139710000 89233000 79614000 90649000 132100000 106260000 162530000 11412000 211540000 187370000 216590000 142840000 97154000 85486000 88474000 125800000 6 6 4 6 6 6 6 6 6 6 6 60591000 94306000 825850 122180000 43829000 36423000 41376000 36888000 36616000 42645000 77344000 56423000 88101000 5072100 121390000 42013000 41195000 41948000 37654000 38377000 41413000 73350000 3 3 2 3 3 2 2 2 2 2 3 13405000000 7645200000 5759700000 21590 1607 19842 112720;112721;112722;112723;112724;112725;112726 136636;136637;136638;136639;136640;136641;136642;136643;136644 136642 9 WKDTDEADLVLAK Unmodified 1502.7617 0.76167379 1035 P45973 CBX5 Chromobox protein homolog 5 yes yes 0 0 0 1 By MS/MS By MS/MS 5 1.22 1 2 2 2 1 5 3 60.763 60.858 3 1.5206E-09 19304 20211116_3442_TMUAki_TMT10x_S_F4 135.85 100.19 129500000 196190000 923450 239320000 203880000 203670000 160820000 102360000 93937000 107050000 146750000 120580000 183230000 12232000 240560000 194430000 207410000 163310000 109320000 100370000 104360000 139930000 10 10 6 10 10 10 10 10 10 10 10 96842000 144630000 664020 170740000 179890000 180290000 132530000 75768000 71704000 82228000 113850000 90171000 135050000 9452400 172490000 171310000 180730000 135030000 82504000 77104000 80042000 108520000 7 7 4 7 7 7 7 7 7 7 7 32660000 51558000 259430 68572000 23985000 23379000 28291000 26591000 22233000 24826000 32895000 30411000 48173000 2779400 68077000 23119000 26677000 28284000 26821000 23262000 24319000 31402000 3 3 2 3 3 3 3 3 3 3 3 10761000000 6809400000 3951900000 21591 1035 19843 112727;112728;112729;112730;112731;112732;112733;112734 136645;136646;136647;136648;136649;136650;136651;136652;136653;136654 136652 10 WKEPGSGGPQNLSGPGGR Unmodified 1779.8652 0.86524444 2782 Q9H0W8;Q9H0W8-2 SMG9 Protein SMG9 yes no 0 0 0 1 By MS/MS By matching 8 0 2 1 1 38.41 38.766 3 6.1237E-58 9464 20211116_3436_TMUAki_TMT10x_P_F8 247.36 221.29 173230 261710 4934 406760 739220 520420 339540 176510 190760 176170 297440 161330 244750 26888 406410 699050 515430 360700 196810 204360 172070 283630 1 1 1 1 1 1 1 1 1 1 1 173230 261710 4934 406760 739220 520420 339540 176510 190760 176170 297440 161330 244750 26888 406410 699050 515430 360700 196810 204360 172070 283630 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28281000 12806000 15475000 21592 2782 19844 112735;112736 136655 136655 1 WKPPMIDNPSYQGIWKPR Oxidation (M) 2228.1201 0.12007892 834 P27824;P27824-2;P27824-3 CANX Calnexin yes no 0 0 1 2 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 60.026 60.082 4 8.8145E-13 18645 20211116_3433_TMUAki_TMT10x_P_F5 138.91 131.63 31618000 52738000 681880 55428000 38668000 40229000 44533000 14852000 12452000 18157000 32861000 29445000 49220000 3355600 56128000 37265000 41350000 43872000 16481000 14796000 17597000 31068000 4 4 4 4 4 4 4 4 4 4 4 19063000 30730000 495740 34080000 24439000 30649000 30331000 9306100 7393900 10890000 19670000 17753000 28687000 2117800 34479000 23612000 30955000 29748000 10586000 8961300 10571000 18594000 2 2 2 2 2 2 2 2 2 2 2 12555000 22009000 186140 21348000 14229000 9580100 14202000 5546300 5058400 7266700 13191000 11691000 20534000 1237800 21649000 13654000 10395000 14124000 5894200 5834800 7026100 12473000 2 2 2 2 2 2 2 2 2 2 2 4613100000 2253200000 2359900000 21593 834 19845 112737;112738;112739 136656;136657;136658;136659 136656 1007 4 WKPPMIDNPSYQGIWKPR Unmodified 2212.1252 0.12516429 834 P27824;P27824-2;P27824-3 CANX Calnexin yes no 0 0 0 2 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 63.541 63.558 4 3.5994E-50 19000 20211116_3434_TMUAki_TMT10x_P_F6 227 207.79 58218000 90136000 817140 106940000 66848000 53263000 75884000 25865000 22108000 25946000 57416000 54213000 84169000 5709100 107100000 64374000 56955000 74836000 27683000 26097000 25337000 54294000 8 8 8 8 8 8 8 8 8 8 8 32858000 49955000 477330 58957000 39763000 37566000 48109000 13816000 12026000 13991000 31289000 30597000 46647000 3265700 59191000 38366000 39056000 47245000 15251000 14497000 13657000 29587000 4 4 4 4 4 4 4 4 4 4 4 25360000 40180000 339810 47980000 27085000 15696000 27776000 12049000 10082000 11956000 26127000 23615000 37522000 2443400 47914000 26008000 17900000 27590000 12432000 11600000 11680000 24707000 4 4 4 4 4 4 4 4 4 4 4 4354500000 1615800000 2738600000 21594 834 19845 112740;112741;112742 136660;136661;136662;136663;136664;136665;136666;136667 136662 8 WKRPPENEAPPVPFLHAQR Unmodified 2268.1916 0.19160438 2395 Q969N2;Q969N2-2;Q969N2-4;Q969N2-5 PIGT GPI transamidase component PIG-T yes no 0 0 0 2 By MS/MS By matching 3 0 2 1 1 46.909 46.735 5 0.0037508 14702 20211116_3430_TMUAki_TMT10x_P_F3 59.512 49.347 1637500 2579800 64042 3172100 3568000 3805800 2266500 1981300 1873300 1713400 2213600 1525200 2409400 222490 3203700 3392300 3797000 2354900 2098500 1935000 1684400 2124800 2 2 2 2 2 2 2 2 2 2 2 1637500 2579800 64042 3172100 3568000 3805800 2266500 1981300 1873300 1713400 2213600 1525200 2409400 222490 3203700 3392300 3797000 2354900 2098500 1935000 1684400 2124800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 329900000 159130000 170770000 21595 2395 19846 112743;112744 136668;136669 136668 2 WLAGDVPAAR Unmodified 1054.556 0.55597854 395 O94906;O94906-2 PRPF6 Pre-mRNA-processing factor 6 yes no 0 0 0 0 By MS/MS 6 0 1 1 51.141 51.283 2 0.00010076 14329 20211116_3445_TMUAki_TMT10x_S_F6 96.936 70.243 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21596 395 19847 112745 136670 136670 1 WLAIDANAR Unmodified 1028.5403 0.54032847 1739 Q14974 KPNB1 Importin subunit beta-1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 55.018 55.372 2 0.0001476 17460 20211116_3435_TMUAki_TMT10x_P_F7 137.62 105.78 100570000 150100000 30168 174060000 115970000 114630000 98971000 83678000 79676000 90255000 117180000 93637000 140150000 7853800 174990000 110720000 119750000 100680000 86837000 83232000 87876000 111880000 7 7 1 7 7 7 7 7 7 7 7 40339000 57689000 30168 67715000 56963000 65879000 41894000 33249000 31204000 35706000 44561000 37558000 53867000 3312900 68345000 54222000 66493000 42952000 35525000 32687000 34771000 42573000 3 3 1 3 3 3 3 3 3 3 3 60233000 92411000 0 106350000 59003000 48756000 57078000 50430000 48471000 54549000 72618000 56079000 86281000 4540900 106650000 56498000 53259000 57730000 51312000 50545000 53106000 69304000 4 4 0 4 4 4 4 4 4 4 4 2488100000 1177600000 1310500000 21597 1739 19848 112746;112747;112748;112749 136671;136672;136673;136674;136675;136676;136677 136673 7 WLAIDANARR Unmodified 1184.6414 0.6414395 1739 Q14974 KPNB1 Importin subunit beta-1 yes yes 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 43.89 43.732 3 5.5114E-05 11645 20211116_3440_TMUAki_TMT10x_S_F2 123.75 97.365 1028400 1587000 22931 1703000 1404600 740740 778200 1293800 1223400 1072700 1404700 957760 1481300 111900 1714700 1332400 826400 835900 1280900 1231500 1056800 1349400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1028400 1587000 22931 1703000 1404600 740740 778200 1293800 1223400 1072700 1404700 957760 1481300 111900 1714700 1332400 826400 835900 1280900 1231500 1056800 1349400 1 1 1 1 1 1 1 1 1 1 1 86614000 0 86614000 21598 1739 19849 112750;112751 136678 136678 1 WLAPDGLIFPDR Unmodified 1398.7296 0.7295858 2612 Q99873;Q99873-2;Q99873-3 PRMT1 Protein arginine N-methyltransferase 1 yes no 0 0 0 0 By MS/MS By MS/MS 6 1.1 1 2 2 3 2 78.795 78.809 2 1.981E-16 27762 20211116_3446_TMUAki_TMT10x_S_F7 205.53 153.68 63144000 98640000 415380 107450000 61049000 62839000 70060000 32547000 26507000 38740000 62338000 58794000 92074000 5294400 108330000 58769000 66087000 69246000 34806000 30144000 37580000 59026000 4 4 2 4 4 4 4 4 4 4 4 31147000 47987000 236510 49943000 26371000 38451000 30614000 15839000 13184000 18493000 30011000 29001000 44784000 2493600 50640000 25391000 39372000 30291000 17325000 14772000 17952000 28430000 2 2 1 2 2 2 2 2 2 2 2 31997000 50653000 178880 57511000 34679000 24388000 39446000 16708000 13324000 20247000 32327000 29793000 47290000 2800900 57691000 33379000 26715000 38954000 17481000 15372000 19628000 30596000 2 2 1 2 2 2 2 2 2 2 2 7958000000 3235600000 4722400000 21599 2612 19850 112752;112753;112754;112755;112756 136679;136680;136681;136682;136683 136683 5 WLCPLSGK Unmodified 959.48987 0.48987281 2715 Q9BXP5;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3 SRRT Serrate RNA effector molecule homolog yes no 0 0 0 0 By MS/MS 3 0 1 1 62.353 62.079 2 0.092611 21040 20211116_3430_TMUAki_TMT10x_P_F3 49.833 14.733 3547600 5954900 30565 6280100 5643700 6845400 4133200 3507700 3220200 3665500 4546400 3303400 5557800 351960 6392200 5375300 6863700 4243200 3739600 3363000 3573400 4344700 1 1 1 1 1 1 1 1 1 1 1 3547600 5954900 30565 6280100 5643700 6845400 4133200 3507700 3220200 3665500 4546400 3303400 5557800 351960 6392200 5375300 6863700 4243200 3739600 3363000 3573400 4344700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 322010000 322010000 0 21600 2715 19851 112757 136684 136684 1 WLDLKDNPLDPVLAK Unmodified 1735.9509 0.95087155 2409 Q96AG4 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 0 0 0 1 By MS/MS By MS/MS 7 0.707 2 4 2 5 3 78.216 78.22 3 4.2666E-14 25669 20211116_3436_TMUAki_TMT10x_P_F8 144.05 122.21 111400000 189130000 639870 127440000 144300000 166810000 147330000 76351000 62362000 91764000 129340000 103720000 176250000 9299400 134950000 138410000 165470000 146660000 82655000 69537000 88986000 122690000 7 7 3 7 7 7 7 7 7 7 7 60477000 101040000 206380 68030000 64075000 105420000 79969000 41122000 34149000 51240000 68077000 56306000 94154000 4458000 72292000 61798000 103650000 78867000 45358000 37949000 49627000 64621000 4 4 2 4 4 4 4 4 4 4 4 50923000 88097000 433500 59406000 80226000 61387000 67365000 35229000 28213000 40523000 61258000 47416000 82096000 4841400 62660000 76615000 61827000 67792000 37297000 31588000 39359000 58071000 3 3 1 3 3 3 3 3 3 3 3 12533000000 6051300000 6481800000 21601 2409 19852 112758;112759;112760;112761;112762;112763;112764;112765 136685;136686;136687;136688;136689;136690;136691;136692;136693 136690 9 WLGPILGYDTD Unmodified 1248.6027 0.60265396 2597 Q99707;Q99707-2 MTR Methionine synthase yes no 0 0 0 0 By MS/MS By MS/MS 4.4 1.02 1 2 1 1 2 3 82.368 82.362 2 0.0018879 28052 20211116_3442_TMUAki_TMT10x_S_F4 80.18 68.133 1828500 2888700 7619.9 2860000 2069300 2527400 2181200 1786700 1756100 1833200 2240400 1702400 2695400 150150 2914800 1986700 2578600 2193500 1855400 1822300 1788500 2146200 3 3 1 3 3 3 3 3 3 3 3 791320 1176000 0 1229400 740320 1267300 826280 789510 713630 756320 913910 736750 1097600 59447 1251000 711660 1278000 830140 825840 738030 740030 875420 1 1 0 1 1 1 1 1 1 1 1 1037100 1712700 7619.9 1630600 1329000 1260100 1354900 997210 1042500 1076900 1326400 965680 1597800 90700 1663700 1275000 1300600 1363400 1029500 1084300 1048500 1270800 2 2 1 2 2 2 2 2 2 2 2 173890000 61494000 112400000 21602 2597 19853 112766;112767;112768;112769;112770 136694;136695 136694 2 WLHEINQNCDDVCR Unmodified 1857.7887 0.78865038 1784 Q15286;Q15286-2 RAB35 Ras-related protein Rab-35 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 43.891 43.894 3 4.0807E-20 12245 20211116_3442_TMUAki_TMT10x_S_F4 178.58 170.67 5024700 8309300 55879 10375000 12131000 10377000 6187100 7127500 7601500 5842600 7811700 4678700 7761100 537610 10439000 11483000 10498000 6630400 7372300 7678800 5759100 7529200 6 6 4 6 6 6 6 6 6 6 6 3350400 5447100 34217 6957500 10669000 9174900 5000300 4648200 5123600 3872200 5120100 3119700 5088300 407960 7024300 10089000 9108300 5372200 4931200 5206900 3813800 4939200 4 4 3 4 4 4 4 4 4 4 4 1674400 2862200 21662 3417800 1461300 1202100 1186800 2479300 2477900 1970400 2691700 1559000 2672800 129650 3414400 1393800 1390000 1258100 2441100 2471900 1945300 2590000 2 2 1 2 2 2 2 2 2 2 2 1155200000 783390000 371860000 21603 1784 19854 112771;112772;112773;112774 136696;136697;136698;136699;136700;136701 136701 6 WLHNEDQMAVEK Oxidation (M) 1514.6824 0.68237762 966 P37837 TALDO1 Transaldolase yes yes 0 0 1 0 By MS/MS By MS/MS 4 0 2 1 1 38.934 39.05 3 0.00010254 10034 20211116_3442_TMUAki_TMT10x_S_F4 93.011 78.981 2740000 4688600 1156.3 5369600 7710900 6235300 5254800 2311700 2071400 2141200 3679700 2551200 4377500 292790 5442700 7331600 6210500 5360000 2543200 2303700 2098200 3499900 3 3 1 3 3 3 3 3 3 3 3 2408200 4156400 0 4670800 7418500 6004400 4941900 2026800 1741600 1867100 3177000 2242300 3880300 268780 4748600 7050900 5945200 5043200 2256700 1962800 1830100 3020300 1 1 0 1 1 1 1 1 1 1 1 331840 532170 1156.3 698800 292420 230900 312870 284850 329790 274030 502740 308950 497200 24010 694130 280710 265300 316810 286570 340900 268070 479620 2 2 1 2 2 2 2 2 2 2 2 209930000 184760000 25174000 21604 966 19855 112775;112776 136702;136703;136704 136704 1223 3 WLHNEDQMAVEK Unmodified 1498.6875 0.68746299 966 P37837 TALDO1 Transaldolase yes yes 0 0 0 0 By MS/MS 4 0 1 1 45.981 46.106 3 0.017913 12843 20211116_3431_TMUAki_TMT10x_P_F4 53.034 37.144 2549000 4008800 118860 5650600 6311600 5136900 4027300 2502000 2400700 2281400 3685700 2374200 3746700 374800 5640900 6001600 5205600 4154200 2670200 2559100 2237200 3515600 1 1 1 1 1 1 1 1 1 1 1 2549000 4008800 118860 5650600 6311600 5136900 4027300 2502000 2400700 2281400 3685700 2374200 3746700 374800 5640900 6001600 5205600 4154200 2670200 2559100 2237200 3515600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 242590000 242590000 0 21605 966 19855 112777 136705 136705 1 WLITLNK Unmodified 886.52764 0.52763852 519 P06730;P06730-2;P06730-3 EIF4E Eukaryotic translation initiation factor 4E yes no 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 71.024 70.881 2 0.0018888 22861 20211116_3431_TMUAki_TMT10x_P_F4 132.29 37.878 32598000 54041000 436930 55729000 39233000 42694000 37503000 27516000 24441000 28663000 38270000 30354000 50432000 3135600 56539000 37597000 43957000 37727000 28777000 25927000 27947000 36490000 5 5 4 5 5 5 5 5 5 5 5 15932000 25624000 68405 26871000 23076000 28977000 21360000 12664000 11397000 13473000 17850000 14834000 23915000 1417600 27357000 22083000 29024000 21448000 13723000 12259000 13125000 17019000 2 2 1 2 2 2 2 2 2 2 2 16666000 28417000 368520 28858000 16157000 13717000 16143000 14853000 13045000 15190000 20420000 15520000 26518000 1718000 29182000 15514000 14934000 16280000 15054000 13668000 14821000 19470000 3 3 3 3 3 3 3 3 3 3 3 1995700000 863420000 1132300000 21606 519 19856 112778;112779;112780;112781;112782;112783 136706;136707;136708;136709;136710;136711 136707 6 WLKEDKLECSEELGDLVK Unmodified 2190.0878 0.087835314 1471 Q00610;Q00610-2;P53675;P53675-2 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 0 0 0 2 By MS/MS By MS/MS 6.25 0.829 1 1 2 3 1 67.22 67.475 4 8.8682E-12 22483 20211116_3435_TMUAki_TMT10x_P_F7 128.14 99.727 61596000 121480000 1039400 78612000 101120000 147820000 104910000 66173000 52814000 75935000 88913000 57358000 113190000 6423700 84260000 97100000 144490000 104600000 71693000 57290000 73760000 84654000 6 6 5 6 6 6 6 6 6 6 6 50303000 97595000 810550 62903000 82648000 131870000 90654000 53298000 42633000 60935000 70989000 46842000 90937000 5173700 67653000 79484000 128320000 90049000 58384000 46479000 59197000 67603000 5 5 4 5 5 5 5 5 5 5 5 11292000 23886000 228870 15709000 18467000 15952000 14255000 12875000 10181000 15001000 17924000 10516000 22258000 1250000 16607000 17615000 16167000 14553000 13309000 10810000 14563000 17051000 1 1 1 1 1 1 1 1 1 1 1 6149100000 4718500000 1430600000 21607 1471 19857 112784;112785;112786;112787 136712;136713;136714;136715;136716;136717 136715 6 WLLLCNPGLADTIVEK Unmodified 1840.9757 0.97570609 620 P11216 PYGB Glycogen phosphorylase, brain form yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 80.028 80.032 3 0.00060463 26435 20211116_3436_TMUAki_TMT10x_P_F8 65.172 45.849 1956500 2763500 0 2615600 1538000 2791600 1808000 944900 1100200 1286500 1913100 1821600 2578100 149520 2681400 1481100 2791500 1797900 1064100 1179000 1242400 1820300 1 1 0 1 1 1 1 1 1 1 1 1956500 2763500 0 2615600 1538000 2791600 1808000 944900 1100200 1286500 1913100 1821600 2578100 149520 2681400 1481100 2791500 1797900 1064100 1179000 1242400 1820300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 397580000 397580000 0 21608 620 19858 112788;112789 136718;136719 136718 2 WLLLTGISAQQNR Unmodified 1498.8256 0.82561145 1471 Q00610;Q00610-2 CLTC Clathrin heavy chain 1 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 76.418 76.513 2 1.7529E-29 26351 20211116_3435_TMUAki_TMT10x_P_F7 241.13 216.35 12670000 22902000 4081.3 20617000 15875000 19658000 16539000 9796500 9421600 11766000 15460000 11796000 21361000 1047000 21179000 15235000 19864000 16521000 10517000 10111000 11410000 14727000 3 3 1 3 3 3 3 3 3 3 3 8121900 13509000 0 12806000 9003600 15078000 10376000 6521700 6057600 7611600 9281600 7561800 12603000 633610 13148000 8664200 15028000 10320000 7095300 6466000 7389000 8853800 2 2 0 2 2 2 2 2 2 2 2 4548000 9392500 4081.3 7810200 6871400 4579600 6162500 3274800 3364000 4154100 6178200 4234600 8758300 413400 8031200 6571100 4835400 6201300 3421700 3644600 4020900 5872800 1 1 1 1 1 1 1 1 1 1 1 1118100000 606670000 511380000 21609 1471 19859 112790;112791 136720;136721;136722 136720 3 WLPAGDALLQMITIHLPSPVTAQK Oxidation (M) 2615.4145 0.4145296 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 1 0 By MS/MS By MS/MS 4.25 0.661 1 4 3 4 4 80.264 80.257 3;4 8.7084E-38 25895 20211116_3444_TMUAki_TMT10x_S_F5 184.2 170.47 51173000 83122000 233240 70664000 49545000 67226000 56386000 31925000 28550000 39146000 51315000 47647000 77515000 3902600 72917000 47679000 67904000 55976000 34457000 31071000 37935000 48797000 11 11 5 11 11 11 11 11 11 11 11 23629000 37681000 69781 32002000 19004000 40056000 22463000 14073000 12784000 17164000 23327000 22001000 35139000 1878100 33169000 18308000 39726000 22305000 15712000 13803000 16636000 22177000 4 4 2 4 4 4 4 4 4 4 4 27544000 45441000 163460 38662000 30541000 27170000 33924000 17852000 15766000 21982000 27987000 25646000 42376000 2024500 39748000 29372000 28178000 33671000 18745000 17268000 21299000 26620000 7 7 3 7 7 7 7 7 7 7 7 20339000000 8412500000 11927000000 21610 653 19860 112792;112793;112794;112795;112796;112797;112798;112799 136723;136724;136725;136726;136727;136728;136729;136730;136731;136732;136733 136731 714 11 WLPAGDALLQMITIHLPSPVTAQK Unmodified 2599.4196 0.41961498 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 81.853 81.871 4 3.116E-22 29020 20211116_3446_TMUAki_TMT10x_S_F7 141.64 125.69 1796200 2898500 6723 2639800 1741900 1300200 1908400 979980 929220 1148900 1568800 1672300 2703700 132790 2691300 1673400 1400000 1896700 1017600 1010900 1115100 1493600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1796200 2898500 6723 2639800 1741900 1300200 1908400 979980 929220 1148900 1568800 1672300 2703700 132790 2691300 1673400 1400000 1896700 1017600 1010900 1115100 1493600 2 2 1 2 2 2 2 2 2 2 2 218100000 0 218100000 21611 653 19860 112800;112801 136734;136735 136735 2 WLPLEANPEVTNQFLK Unmodified 1897.9938 0.993799 683 P15374 UCHL3 Ubiquitin carboxyl-terminal hydrolase isozyme L3 yes yes 0 0 0 0 By MS/MS By MS/MS 7.86 0.35 1 6 5 2 79.191 79.194 2;3 2.626E-21 26065 20211116_3436_TMUAki_TMT10x_P_F8 174.84 148.8 11711000 19454000 361010 18218000 11110000 17832000 13528000 7193400 6646500 9595600 12908000 10907000 18148000 1247400 18667000 10732000 17951000 13382000 7922600 7285000 9272600 12258000 3 3 2 3 3 3 3 3 3 3 3 11711000 19454000 361010 18218000 11110000 17832000 13528000 7193400 6646500 9595600 12908000 10907000 18148000 1247400 18667000 10732000 17951000 13382000 7922600 7285000 9272600 12258000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4001500000 3348800000 652690000 21612 683 19861 112802;112803;112804;112805;112806;112807;112808 136736;136737;136738;136739;136740;136741 136737 6 WLQDLQEENESLK Unmodified 1630.7839 0.7838658 2107 Q86UP2;Q86UP2-3;Q86UP2-4;Q86UP2-2 KTN1 Kinectin yes no 0 0 0 0 By MS/MS 2 0 1 1 73.341 73.156 3 2.2783E-08 25004 20211116_3429_TMUAki_TMT10x_P_F2 107.99 85.796 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21613 2107 19862 112809 136742 136742 1 WLSCETQLPVSFR Unmodified 1621.7923 0.79226242 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 By MS/MS By MS/MS 2.6 2.73 3 1 1 3 2 73.69 73.666 2;3 3.6768E-19 25678 20211116_3439_TMUAki_TMT10x_S_F1 192.44 175.87 21604000 36621000 142130 33167000 26793000 31061000 25220000 15791000 14028000 18503000 25197000 20117000 34158000 1970500 34048000 25658000 31429000 25318000 16907000 15157000 17960000 23961000 5 5 4 5 5 5 5 5 5 5 5 11941000 19383000 29919 18291000 12738000 21073000 14421000 8967800 8224100 10256000 13058000 11118000 18082000 1003300 18779000 12256000 21024000 14348000 9767300 8809400 9963800 12447000 3 3 2 3 3 3 3 3 3 3 3 9663100 17238000 112210 14876000 14055000 9988100 10799000 6823700 5804200 8247000 12139000 8998100 16076000 967230 15269000 13402000 10406000 10969000 7140100 6348100 7995800 11514000 2 2 2 2 2 2 2 2 2 2 2 1605100000 1202700000 402400000 21614 352 19863 112810;112811;112812;112813;112814 136743;136744;136745;136746;136747;136748;136749 136747 7 WLSTRPEVASIEPLGLDEQQCSQK Unmodified 2770.3596 0.3595935 2286 Q8TEM1;Q8TEM1-2 NUP210 Nuclear pore membrane glycoprotein 210 yes no 0 0 0 1 By MS/MS 5.5 0.5 1 1 2 68.468 68.44 4 0.0029938 21107 20211116_3444_TMUAki_TMT10x_S_F5 57.432 42.342 2004900 3567200 111110 3896900 2101600 2373100 2136900 2211300 2094800 2368400 2867000 1867600 3329800 271130 3929400 2022800 2507900 2164400 2261200 2160300 2306600 2741700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2004900 3567200 111110 3896900 2101600 2373100 2136900 2211300 2094800 2368400 2867000 1867600 3329800 271130 3929400 2022800 2507900 2164400 2261200 2160300 2306600 2741700 1 1 1 1 1 1 1 1 1 1 1 532320000 0 532320000 21615 2286 19864 112815;112816 136750 136750 1 WMDEAQALDTADRFINSK Oxidation (M) 2125.9739 0.97386819 2714 Q9BXJ9;Q9BXJ9-4 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes no 0 0 1 1 By MS/MS By MS/MS 5 1 1 1 1 1 74.813 74.801 3 0.0045323 24554 20211116_3431_TMUAki_TMT10x_P_F4 60.669 6.3141 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21616 2714 19865 112817;112818 136751;136752 136751 2915 2 WNFTTPRDEYIEQLK Unmodified 1938.9476 0.94757708 1672 Q14008;Q14008-2;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 1 By MS/MS 6 0 1 1 65.53 65.486 3 0.10911 20223 20211116_3445_TMUAki_TMT10x_S_F6 30.739 0.68032 4013300 6335000 1855.7 6319800 3766400 3223200 3729600 2411100 2308500 2926700 4118000 3736800 5911200 331000 6402000 3610600 3456400 3741000 2507800 2474900 2837200 3916500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4013300 6335000 1855.7 6319800 3766400 3223200 3729600 2411100 2308500 2926700 4118000 3736800 5911200 331000 6402000 3610600 3456400 3741000 2507800 2474900 2837200 3916500 1 1 1 1 1 1 1 1 1 1 1 351550000 0 351550000 21617 1672 19866 112819 136753 136753 1 WNLDELPK Unmodified 1013.5182 0.51819605 710 P17844;P17844-2 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 0 By MS/MS 5 0 1 1 64.377 64.515 2 0.0046681 20573 20211116_3433_TMUAki_TMT10x_P_F5 92.062 68.506 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21618 710 19867 112820 136754 136754 1 WNLDELPKFEK Unmodified 1417.7242 0.72416608 710 P17844;P17844-2 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 1 By MS/MS By MS/MS 6.8 0.748 2 2 1 3 2 68.392 68.564 3 1.699E-06 23407 20211116_3446_TMUAki_TMT10x_S_F7 123.02 102.72 73084000 118440000 962940 120150000 84860000 104490000 78682000 60276000 49146000 61934000 83771000 68056000 110520000 7121500 122220000 81271000 106420000 79219000 63566000 52519000 60420000 79739000 6 6 6 6 6 6 6 6 6 6 6 43869000 69338000 687890 70697000 53355000 77006000 48578000 37982000 30862000 38132000 49637000 40851000 64704000 4411000 72121000 51081000 77182000 48976000 40592000 32838000 37236000 47302000 4 4 4 4 4 4 4 4 4 4 4 29215000 49099000 275050 49451000 31505000 27483000 30104000 22294000 18284000 23802000 34134000 27204000 45816000 2710600 50095000 30190000 29236000 30243000 22974000 19680000 23184000 32437000 2 2 2 2 2 2 2 2 2 2 2 4874400000 2922800000 1951600000 21619 710 19868 112821;112822;112823;112824;112825 136755;136756;136757;136758;136759;136760 136760 6 WNPEALPSNTGEVNFQSGIIAAR Unmodified 2470.2241 0.2240863 933 P35573;P35573-2;P35573-3 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 74.79 74.966 3 4.2757E-28 26115 20211116_3446_TMUAki_TMT10x_S_F7 171.42 161.27 6795900 12634000 23374 10900000 9536200 11986000 9942900 10762000 10754000 10699000 9973300 6327300 11783000 560250 11259000 9151300 12116000 10089000 11002000 10877000 10452000 9645000 3 3 2 3 3 3 3 3 3 3 3 2457500 4923500 4431.6 4393000 3232000 6580900 3802400 4001000 4042000 4080700 3810000 2288200 4592100 218720 4551800 3113600 6511300 3834600 4200500 4093300 3982200 3682500 1 1 1 1 1 1 1 1 1 1 1 4338400 7710700 18943 6507300 6304200 5405300 6140500 6760900 6711800 6618700 6163300 4039100 7190400 341530 6707000 6037700 5605000 6254800 6801300 6783700 6470000 5962500 2 2 1 2 2 2 2 2 2 2 2 1628300000 573540000 1054800000 21620 933 19869 112826;112827 136761;136762;136763 136762 3 WNPTAGVAFEYDPDNALR Unmodified 2034.9436 0.94355434 731 P19387 POLR2C DNA-directed RNA polymerase II subunit RPB3 yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 76.312 76.295 2;3 2.067E-07 25456 20211116_3433_TMUAki_TMT10x_P_F5 104.97 95.189 3144300 5466900 20370 4826600 4620700 3944800 3872100 3689900 3267900 3418800 4100900 2927600 5098800 279420 4955900 4411600 4067400 3948100 3756400 3380500 3350100 3930200 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3144300 5466900 20370 4826600 4620700 3944800 3872100 3689900 3267900 3418800 4100900 2927600 5098800 279420 4955900 4411600 4067400 3948100 3756400 3380500 3350100 3930200 2 2 1 2 2 2 2 2 2 2 2 462660000 0 462660000 21621 731 19870 112828;112829;112830 136764;136765;136766 136764 3 WNPTQNVR Unmodified 1013.5043 0.50427732 1099;2041 P49427;Q712K3 CDC34;UBE2R2 Ubiquitin-conjugating enzyme E2 R1;Ubiquitin-conjugating enzyme E2 R2 no no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 36.237 36.657 2 0.0051287 8655 20211116_3436_TMUAki_TMT10x_P_F8 89.752 83.842 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21622 1099;2041 19871 112831;112832 136767;136768 136767 2 WNSPAEEGSSDCEVFSK Unmodified 1927.7894 0.78942146 916 P34932 HSPA4 Heat shock 70 kDa protein 4 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.745 1 2 3 3 3 57.224 57.09 2;3 1.2476E-22 18931 20211116_3430_TMUAki_TMT10x_P_F3 178.51 168.45 18462000 31181000 44694 39212000 25549000 25883000 20620000 16943000 16722000 16958000 24223000 17189000 29125000 1250800 39236000 24371000 26989000 21053000 17678000 17449000 16562000 23135000 7 7 2 7 7 7 7 7 7 7 7 10187000 16864000 16472 20971000 20012000 21284000 16535000 9547200 9534800 9438600 13681000 9485500 15751000 651460 21108000 19101000 21400000 16737000 10296000 10153000 9222700 13069000 4 4 1 4 4 4 4 4 4 4 4 8274100 14317000 28222 18242000 5537300 4598500 4085300 7395400 7187700 7519600 10543000 7703600 13374000 599380 18128000 5269800 5589100 4315900 7381700 7295500 7338900 10066000 3 3 1 3 3 3 3 3 3 3 3 3630100000 2170900000 1459200000 21623 916 19872 112833;112834;112835;112836;112837;112838 136769;136770;136771;136772;136773;136774;136775;136776;136777 136770 9 WNTDNTLGTEIAIEDQICQGLK Unmodified 2518.201 0.20096759 1034 P45880;P45880-2;P45880-1 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 1.38 1 2 3 3 2 1 5 7 79.384 79.363 2;3 4.8027E-45 25837 20211116_3445_TMUAki_TMT10x_S_F6 212.18 198.45 49459000 82627000 662210 78087000 59752000 52431000 61326000 30625000 22318000 33469000 52484000 46054000 77083000 4607500 79599000 57356000 54506000 60915000 32323000 25482000 32570000 49696000 13 13 6 13 13 13 13 13 13 13 13 19331000 30408000 344790 29610000 19328000 26838000 22955000 11544000 8793200 12759000 19070000 18001000 28371000 1877700 30222000 18642000 27168000 22656000 12545000 9929900 12411000 18078000 5 5 2 5 5 5 5 5 5 5 5 30128000 52219000 317420 48477000 40424000 25593000 38370000 19081000 13525000 20710000 33415000 28053000 48712000 2729800 49376000 38714000 27338000 38259000 19778000 15552000 20159000 31618000 8 8 4 8 8 8 8 8 8 8 8 20956000000 10541000000 10415000000 21624 1034 19873 112839;112840;112841;112842;112843;112844;112845;112846;112847;112848;112849;112850 136778;136779;136780;136781;136782;136783;136784;136785;136786;136787;136788;136789;136790;136791;136792;136793 136793 16 WNTDNTLGTEITVEDQLAR Unmodified 2175.0444 0.044390595 760 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.62 1 2 4 4 3 6 7 71.841 71.681 2;3 1.6769E-192 24414 20211116_3429_TMUAki_TMT10x_P_F2 445.61 410.02 31686000 55485000 414260 52827000 38293000 48246000 40913000 34625000 34782000 38386000 42496000 29505000 51763000 2618900 54011000 36800000 49127000 41173000 36005000 35927000 37334000 40755000 16 16 8 16 16 16 16 16 16 16 16 16842000 28613000 139770 26387000 17810000 31097000 22659000 17611000 17021000 19702000 22121000 15682000 26691000 1245000 27147000 17201000 31086000 22556000 18649000 17744000 19155000 21181000 8 8 2 8 8 8 8 8 8 8 8 14844000 26872000 274490 26439000 20483000 17149000 18255000 17014000 17761000 18684000 20375000 13823000 25073000 1374000 26864000 19599000 18041000 18618000 17355000 18183000 18179000 19574000 8 8 6 8 8 8 8 8 8 8 8 9212800000 4918600000 4294100000 21625 760 19874 112851;112852;112853;112854;112855;112856;112857;112858;112859;112860;112861;112862;112863 136794;136795;136796;136797;136798;136799;136800;136801;136802;136803;136804;136805;136806;136807;136808;136809;136810;136811;136812 136796 19 WNVSRPSLLADSK Unmodified 1471.7783 0.77832691 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 52.121 51.91 3 0.013816 15092 20211116_3440_TMUAki_TMT10x_S_F2 57.148 33.076 8427400 13340000 31213 16387000 12519000 12071000 8881500 9300700 8830600 8488100 10606000 7847000 12459000 785080 16438000 11914000 12501000 9197500 9571700 9048800 8323400 10176000 2 2 2 2 2 2 2 2 2 2 2 4843100 7094600 19952 9245100 9153200 9510100 6276300 4770100 4841700 4497600 5724900 4509500 6628000 480480 9283600 8705400 9565400 6472300 5081000 5019700 4403800 5495200 1 1 1 1 1 1 1 1 1 1 1 3584300 6245100 11260 7141900 3365600 2560400 2605200 4530600 3988900 3990500 4880800 3337500 5830700 304600 7154100 3208600 2935300 2725100 4490800 4029100 3919600 4680700 1 1 1 1 1 1 1 1 1 1 1 456800000 347130000 109670000 21626 1997 19875 112864;112865 136813;136814 136814 2 WPEVDDDSIEDLGEVKK Unmodified 1972.9266 0.92656687 222 O43583 DENR Density-regulated protein yes yes 0 0 0 1 By MS/MS 3 0 1 1 70.92 70.671 3 1.1783E-10 24394 20211116_3430_TMUAki_TMT10x_P_F3 122.01 111.81 2745800 4537800 48564 4441000 3389900 4678500 3546600 2090100 1879500 2323100 3139900 2557000 4233800 281930 4541000 3257200 4693300 3537700 2262700 2029800 2259200 2989900 1 1 1 1 1 1 1 1 1 1 1 2745800 4537800 48564 4441000 3389900 4678500 3546600 2090100 1879500 2323100 3139900 2557000 4233800 281930 4541000 3257200 4693300 3537700 2262700 2029800 2259200 2989900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 863460000 863460000 0 21627 222 19876 112866 136815 136815 1 WPGDILAYK Unmodified 1061.5546 0.55458155 3106 Q9UG63;Q9UG63-2 ABCF2 ATP-binding cassette sub-family F member 2 yes no 0 0 0 0 By MS/MS 8 0 1 1 74.247 74.269 2 3.1337E-05 24050 20211116_3436_TMUAki_TMT10x_P_F8 111.95 76.652 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21628 3106 19877 112867 136816 136816 1 WQDIQNDPR Unmodified 1170.5418 0.54178503 1735 Q14839;Q14839-2;Q8TDI0 CHD4;CHD5 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5 yes no 0 0 0 0 By MS/MS 3 0 1 1 39.456 39.51 2 0.10154 11728 20211116_3430_TMUAki_TMT10x_P_F3 56.258 29.874 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21629 1735 19878 112868 136817 136817 1 WQFDIECDK Unmodified 1239.523 0.52302343 1614 Q13257 MAD2L1 Mitotic spindle assembly checkpoint protein MAD2A yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 65.135 65.161 2 5.27E-06 21068 20211116_3442_TMUAki_TMT10x_S_F4 183.67 138.04 36452000 56365000 0 63463000 35149000 30809000 36558000 15000000 13813000 18150000 35206000 33937000 52621000 2571800 63753000 33710000 33045000 36304000 16143000 15807000 17596000 33300000 5 5 0 5 5 5 5 5 5 5 5 14724000 22352000 0 24937000 14813000 16914000 14743000 6291900 5660000 7417200 13481000 13709000 20866000 1146700 25137000 14197000 17487000 14677000 6966900 6433000 7197700 12763000 2 2 0 2 2 2 2 2 2 2 2 21728000 34013000 0 38526000 20336000 13895000 21814000 8707800 8152900 10733000 21725000 20229000 31755000 1425100 38616000 19513000 15558000 21627000 9175900 9373600 10399000 20537000 3 3 0 3 3 3 3 3 3 3 3 3009500000 1500000000 1509600000 21630 1614 19879 112869;112870;112871;112872;112873;112874 136818;136819;136820;136821;136822;136823;136824 136822 7 WQHDLFDSGFGGGAGVETGGK Unmodified 2120.9552 0.95518166 2113 Q86V81 ALYREF THO complex subunit 4 yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.957 1 2 2 1 2 4 65.156 65.264 3 6.5538E-35 20097 20211116_3445_TMUAki_TMT10x_S_F6 183.24 172.9 42394000 65803000 245860 89873000 37636000 38616000 37789000 29180000 26004000 28383000 43920000 39474000 61491000 3508800 89219000 36095000 42289000 37959000 30120000 27606000 27753000 41813000 9 9 5 9 9 9 9 9 9 9 9 15651000 22444000 177430 32640000 13095000 18692000 13061000 8713200 7688100 8626700 14114000 14574000 20980000 1403000 32369000 12565000 19678000 13084000 9360000 8284500 8428900 13417000 3 3 2 3 3 3 3 3 3 3 3 26743000 43359000 68433 57233000 24541000 19924000 24728000 20467000 18316000 19756000 29805000 24900000 40511000 2105800 56849000 23530000 22611000 24875000 20760000 19322000 19324000 28396000 6 6 3 6 6 6 6 6 6 6 6 4110100000 1096500000 3013700000 21631 2113 19880 112875;112876;112877;112878;112879;112880 136825;136826;136827;136828;136829;136830;136831;136832;136833;136834;136835 136831 11 WQLSVATEQPELEGPR Unmodified 1838.9163 0.91627696 2918 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 0 By MS/MS By MS/MS 4 0.707 2 4 2 2 6 64.872 64.805 2;3 1.524E-107 20436 20211116_3431_TMUAki_TMT10x_P_F4 361.51 322.25 40850000 68901000 346550 66141000 46260000 47710000 46155000 37873000 35446000 40575000 49810000 38036000 64281000 3478000 67394000 44354000 49520000 46491000 39084000 37039000 39517000 47605000 15 15 10 15 15 15 15 15 15 15 15 10200000 15247000 44170 15956000 10460000 16733000 12257000 7667400 7295500 8460300 11310000 9497100 14229000 795020 16239000 10071000 16795000 12186000 8277000 7781400 8230100 10786000 3 3 1 3 3 3 3 3 3 3 3 30650000 53654000 302380 50185000 35800000 30977000 33897000 30205000 28151000 32115000 38501000 28539000 50052000 2683000 51155000 34283000 32725000 34305000 30807000 29257000 31286000 36820000 12 12 9 12 12 12 12 12 12 12 12 5572200000 2350400000 3221800000 21632 2918 19881 112881;112882;112883;112884;112885;112886;112887;112888 136836;136837;136838;136839;136840;136841;136842;136843;136844;136845;136846;136847;136848;136849;136850;136851 136838 16 WQMNPYDR Oxidation (M) 1124.4709 0.47092828 2334 Q92499;Q92499-2 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 1 0 By MS/MS By MS/MS 5.57 0.904 1 2 3 1 3 4 37.285 37.453 2 0.0038431 9446 20211116_3431_TMUAki_TMT10x_P_F4 106.94 89.575 5397700 8915000 49623 12414000 13810000 7780300 6253000 3286600 3285800 2956200 7110100 5026000 8331700 593740 12348000 13053000 8110900 6646000 3558500 3608300 2900800 6740500 8 8 5 8 8 8 8 8 8 8 8 3337100 5501800 37709 7618000 12437000 6856800 5070100 2093400 2013300 1888100 4461200 3107500 5141700 439260 7610800 11742000 6925200 5433400 2362600 2268800 1852400 4227800 3 3 3 3 3 3 3 3 3 3 3 2060600 3413200 11914 4795800 1372700 923420 1182900 1193300 1272500 1068200 2648900 1918600 3190000 154480 4736900 1311000 1185600 1212600 1195900 1339500 1048400 2512700 5 5 2 5 5 5 5 5 5 5 5 872650000 651090000 221560000 21633 2334 19882 112889;112890;112891;112892;112893;112894;112895 136852;136853;136854;136855;136856;136857;136858;136859 136852 2685 8 WQMNPYDR Unmodified 1108.476 0.47601365 2334 Q92499;Q92499-2 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 46.919 47.246 2 0.00042369 14268 20211116_3435_TMUAki_TMT10x_P_F7 145.16 107.61 37811000 63162000 139690 79177000 44981000 33599000 30790000 28501000 25650000 25630000 45315000 35204000 58997000 3084600 78961000 42764000 36925000 31815000 29149000 27017000 25150000 43105000 9 9 3 9 9 9 9 9 9 9 9 10376000 16626000 60192 20726000 23613000 18290000 14791000 8184400 7468800 7094600 12041000 9661600 15529000 1057900 20818000 22420000 18556000 15237000 8798700 8080900 6973900 11474000 3 3 1 3 3 3 3 3 3 3 3 27434000 46536000 79495 58451000 21368000 15309000 16000000 20316000 18181000 18535000 33274000 25543000 43467000 2026700 58143000 20344000 18369000 16578000 20350000 18936000 18176000 31631000 6 6 2 6 6 6 6 6 6 6 6 1350000000 789140000 560820000 21634 2334 19882 112896;112897;112898;112899 136860;136861;136862;136863;136864;136865;136866;136867;136868 136862 9 WQNNLLPSR Unmodified 1126.5883 0.5883413 1339 P62244 RPS15A 40S ribosomal protein S15a yes yes 0 0 0 0 By MS/MS By MS/MS 2.8 2.64 2 2 1 3 2 51.817 51.693 2 6.1218E-06 16210 20211116_3429_TMUAki_TMT10x_P_F2 162.97 126.41 18964000 33376000 79950 36352000 46195000 44455000 26734000 29116000 27035000 25474000 31301000 17658000 31155000 1979300 36996000 43806000 44444000 28144000 30269000 27641000 25029000 30063000 6 6 2 6 6 6 6 6 6 6 6 13181000 22820000 10306 24577000 40822000 40832000 23339000 20203000 18754000 17635000 21455000 12273000 21300000 1446200 25192000 38701000 40131000 24446000 21505000 19376000 17329000 20613000 4 4 1 4 4 4 4 4 4 4 4 5782600 10557000 69643 11775000 5372900 3623400 3394900 8913600 8280500 7838700 9846800 5384700 9855100 533170 11805000 5105900 4313000 3698300 8763500 8265700 7700000 9450300 2 2 1 2 2 2 2 2 2 2 2 1982200000 1461300000 520970000 21635 1339 19883 112900;112901;112902;112903;112904 136869;136870;136871;136872;136873;136874 136870 6 WQPDTEEEYEDSSGNVVNKK Unmodified 2353.0346 0.03461377 1572 Q12874 SF3A3 Splicing factor 3A subunit 3 yes yes 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 50.642 50.541 3 7.0325E-11 15095 20211116_3442_TMUAki_TMT10x_S_F4 107.45 85.65 1086200 1607500 0 2994400 4868200 3623400 2442200 1325100 1379300 1070400 1749400 1011300 1505100 132850 2966200 4606200 3600800 2571200 1455700 1462800 1055900 1676200 1 1 0 1 1 1 1 1 1 1 1 1086200 1607500 0 2994400 4868200 3623400 2442200 1325100 1379300 1070400 1749400 1011300 1505100 132850 2966200 4606200 3600800 2571200 1455700 1462800 1055900 1676200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 237600000 237600000 0 21636 1572 19884 112905;112906;112907 136875;136876;136877 136877 3 WQTMIEAHVDVK Oxidation (M) 1471.7129 0.71294946 1305 P61247 RPS3A 40S ribosomal protein S3a yes yes 0 0 1 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 50.144 50.311 3 0.00085211 14708 20211116_3433_TMUAki_TMT10x_P_F5 77.527 50.929 5784900 9784700 20879 10139000 7581000 8429900 6422200 6829600 6059700 6329700 7481700 5386400 9131500 524220 10293000 7241100 8657300 6563700 7009600 6231000 6202500 7173300 2 2 2 2 2 2 2 2 2 2 2 2744800 4809100 4057.8 4813400 4767700 6017100 3594700 3325800 2867700 3361400 3783600 2555700 4487500 259680 4928200 4542200 5995100 3685100 3518300 2981700 3281400 3621600 1 1 1 1 1 1 1 1 1 1 1 3040000 4975600 16821 5325600 2813300 2412700 2827500 3503800 3191900 2968300 3698000 2830700 4644100 264540 5364700 2698900 2662100 2878600 3491300 3249300 2921100 3551700 1 1 1 1 1 1 1 1 1 1 1 1123900000 682910000 441020000 21637 1305 19885 112908;112909;112910;112911 136878;136879 136878 1758 2 WRADPWAR Unmodified 1056.5253 0.52534711 265 O60341;O60341-2 KDM1A Lysine-specific histone demethylase 1A yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 41.75 41.638 3 0.0080882 10763 20211116_3440_TMUAki_TMT10x_S_F2 69.825 56.246 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21638 265 19886 112912;112913 136880;136881 136881 2 WREEQMER Oxidation (M) 1178.5139 0.51385572 580 P09496-2;P09496;P09496-4;P09496-3 CLTA Clathrin light chain A yes no 0 0 1 1 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 27.121 26.861 3 0.019151 7933 20211116_3441_TMUAki_TMT10x_S_F3 62.546 33.819 139480 233430 411.51 230840 218960 181350 146800 97437 85136 93551 152050 129860 217800 11275 234940 208040 185910 150770 103190 91684 91527 144600 2 2 1 2 2 2 2 2 2 2 2 86594 127440 411.51 127870 157100 138980 84329 56045 42166 52746 83817 80631 118910 8550.3 130580 148830 139040 88038 61069 46220 51650 79566 1 1 1 1 1 1 1 1 1 1 1 52885 105990 0 102970 61860 42362 62472 41392 42970 40805 68229 49227 98889 2724.8 104360 59213 46872 62732 42116 45464 39877 65036 1 1 0 1 1 1 1 1 1 1 1 9458700 4478100 4980600 21639 580 19887 112914;112915 136882 136882 548 1 WREFSTNNPFK Unmodified 1424.6837 0.68369824 1735 Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 0 1 By MS/MS By MS/MS 3 0 3 2 1 55.335 54.948 3 1.8407E-07 18055 20211116_3430_TMUAki_TMT10x_P_F3 111.94 99.771 6817100 11780000 158280 14731000 5853600 4492500 5680800 4952900 4387600 5437200 8387400 6348600 11003000 699200 14667000 5617900 5218500 5731200 5027000 4662100 5290300 7967200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6817100 11780000 158280 14731000 5853600 4492500 5680800 4952900 4387600 5437200 8387400 6348600 11003000 699200 14667000 5617900 5218500 5731200 5027000 4662100 5290300 7967200 2 2 2 2 2 2 2 2 2 2 2 396140000 0 396140000 21640 1735 19888 112916;112917;112918 136883;136884;136885;136886 136883 4 WRPDEEILK Unmodified 1184.619 0.61897272 602 P10155;P10155-5;P10155-3;P10155-4 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes no 0 0 0 1 By matching By MS/MS 4.5 0.5 1 1 1 1 50.452 50.626 3 0.00054766 13858 20211116_3444_TMUAki_TMT10x_S_F5 104.82 67.178 2136100 3555500 18720 4636900 1766600 1413200 1574800 2494000 2195500 2222600 3276900 1989100 3321700 189370 4605800 1690200 1662800 1626600 2473000 2244800 2181800 3127700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2136100 3555500 18720 4636900 1766600 1413200 1574800 2494000 2195500 2222600 3276900 1989100 3321700 189370 4605800 1690200 1662800 1626600 2473000 2244800 2181800 3127700 1 1 1 1 1 1 1 1 1 1 1 363300000 216550000 146750000 21641 602 19889 112919;112920 136887 136887 1 WRPGGIEAR Unmodified 1040.5516 0.55156186 3046 Q9P031 CCDC59 Thyroid transcription factor 1-associated protein 26 yes yes 0 0 0 1 By MS/MS 1 0 1 1 33.106 33.117 3 0.019313 9176 20211116_3439_TMUAki_TMT10x_S_F1 58.592 24.205 356650 577890 2889.9 595940 379680 277360 389370 298010 277890 292740 435790 332090 539300 32584 601920 364480 302670 391000 301800 293180 286130 415500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 356650 577890 2889.9 595940 379680 277360 389370 298010 277890 292740 435790 332090 539300 32584 601920 364480 302670 391000 301800 293180 286130 415500 1 1 1 1 1 1 1 1 1 1 1 9054700 0 9054700 21642 3046 19890 112921 136888 136888 1 WSEPNEEELIK Unmodified 1372.6511 0.65106071 978 P39748;P39748-2 FEN1 Flap endonuclease 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.17 0.687 1 3 2 4 2 59.307 59.016 2;3 3.9229E-38 20792 20211116_3441_TMUAki_TMT10x_S_F3 290.51 246.74 20867000 33713000 36111 45564000 32299000 30043000 23466000 14307000 14017000 16597000 24855000 19427000 31502000 1645500 45414000 30732000 31210000 23972000 15409000 15058000 16115000 23641000 5 5 1 5 5 5 5 5 5 5 5 13291000 20993000 0 28127000 27748000 25996000 19424000 8797200 8921400 10511000 15534000 12373000 19615000 1059800 28159000 26381000 26228000 19813000 9863700 9770200 10195000 14780000 3 3 0 3 3 3 3 3 3 3 3 7575800 12720000 36111 17437000 4550600 4047200 4042200 5510100 5095200 6086300 9321200 7053900 11887000 585700 17255000 4350500 4981800 4159400 5545700 5287400 5920400 8861000 2 2 1 2 2 2 2 2 2 2 2 1912600000 1258100000 654480000 21643 978 19891 112922;112923;112924;112925;112926;112927 136889;136890;136891;136892;136893;136894;136895 136895 7 WSFVESLEPSHVVQVR Unmodified 1897.9686 0.96864688 2635 Q9BRJ2 MRPL45 39S ribosomal protein L45, mitochondrial yes yes 0 0 0 0 By MS/MS 7 0 1 1 69.616 69.892 3 9.7736E-07 24019 20211116_3446_TMUAki_TMT10x_S_F7 99.747 81.382 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21644 2635 19892 112928 136896 136896 1 WSGPLSLQEVDEQPQHPLHVTYAGAAVDELGK Unmodified 3470.7106 0.71064786 867 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 0 0 0 0 By MS/MS By MS/MS 5.2 1.25 1 2 3 2 2 5 5 69.757 69.791 4;5 9.3055E-46 23449 20211116_3435_TMUAki_TMT10x_P_F7 187.04 170.37 42125000 67088000 349330 73045000 46526000 49096000 44563000 22934000 20006000 30119000 41505000 39225000 62623000 3279000 73739000 44577000 50905000 44544000 24853000 22190000 29120000 39373000 11 11 7 11 11 11 11 11 11 11 11 11442000 17586000 64050 18506000 9803500 18297000 10327000 5758400 4967100 7580200 10336000 10654000 16413000 957070 18811000 9415200 18371000 10282000 6542100 5478200 7328100 9804200 3 3 2 3 3 3 3 3 3 3 3 30684000 49503000 285280 54539000 36722000 30799000 34236000 17175000 15039000 22539000 31170000 28571000 46210000 2321900 54928000 35161000 32534000 34262000 18311000 16712000 21792000 29569000 8 8 5 8 8 8 8 8 8 8 8 14658000000 6324600000 8333300000 21645 867 19893 112929;112930;112931;112932;112933;112934;112935;112936;112937;112938 136897;136898;136899;136900;136901;136902;136903;136904;136905;136906;136907 136899 11 WSGYMEGAVEAGER Oxidation (M) 1556.6566 0.6565568 757 P21397;P21397-2 MAOA Amine oxidase [flavin-containing] A yes no 0 0 1 0 By MS/MS By MS/MS 3 0 4 2 2 44.517 44.367 2;3 2.8038E-13 13641 20211116_3430_TMUAki_TMT10x_P_F3 141.71 121.57 1299500 2040500 18371 2562500 1987800 1945600 1501500 1636200 1690600 1493100 1897400 1210100 1905900 134500 2568100 1894900 2013100 1554300 1674900 1719000 1464100 1823900 2 2 2 2 2 2 2 2 2 2 2 589890 942960 10600 1160900 1233400 1268700 864060 503970 544850 503160 788330 549330 880700 67797 1170600 1174000 1268600 885880 550970 576900 491440 752940 1 1 1 1 1 1 1 1 1 1 1 709620 1097500 7771 1401500 754460 676910 637390 1132300 1145800 989920 1109000 660780 1025200 66702 1397500 720940 744520 668390 1124000 1142100 972670 1071000 1 1 1 1 1 1 1 1 1 1 1 141160000 91081000 50076000 21646 757 19894 112939;112940;112941;112942 136908;136909;136910;136911 136908 875 4 WSLQSEAHR Unmodified 1112.5363 0.53630573 1859 Q16658 FSCN1 Fascin yes yes 0 0 0 0 By MS/MS 5 0 1 1 33.422 33.6 3 0.00048482 6941 20211116_3444_TMUAki_TMT10x_S_F5 99.855 53.839 325040 549200 5498 546150 364320 314740 344300 385250 415280 367320 483450 302690 512450 32622 553920 349160 336490 352480 387600 421790 359480 464250 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 325040 549200 5498 546150 364320 314740 344300 385250 415280 367320 483450 302690 512450 32622 553920 349160 336490 352480 387600 421790 359480 464250 1 1 1 1 1 1 1 1 1 1 1 9653800 0 9653800 21647 1859 19895 112943 136912 136912 1 WSLQSEAHRR Unmodified 1268.6374 0.63741675 1859 Q16658 FSCN1 Fascin yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 4 2 2 29.781 29.814 3;4 0.00054405 7887 20211116_3439_TMUAki_TMT10x_S_F1 96.957 65.821 778730 1235400 4561.6 1249200 1135700 1077700 833360 681610 761120 690460 948980 725050 1152800 65759 1270800 1081100 1099600 858880 713270 784140 673970 909630 5 5 1 5 5 5 5 5 5 5 5 449670 684060 4561.6 718940 795690 792740 486600 390480 446330 397290 558370 418690 638430 42363 732080 755190 794000 508490 417520 459800 387740 535170 3 3 1 3 3 3 3 3 3 3 3 329060 551310 0 530250 340000 284960 346760 291130 314790 293160 390600 306360 514350 23396 538760 325910 305570 350390 295750 324340 286240 374460 2 2 0 2 2 2 2 2 2 2 2 29522000 20022000 9500100 21648 1859 19896 112944;112945;112946;112947 136913;136914;136915;136916;136917 136917 5 WSNAGELMELIRR Unmodified 1573.8035 0.8034958 1119 P49770 EIF2B2 Translation initiation factor eIF-2B subunit beta yes yes 0 0 0 1 By MS/MS 2 0 1 1 71.332 71.074 3 1.4406E-12 24184 20211116_3429_TMUAki_TMT10x_P_F2 128.71 94.841 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21649 1119 19897 112948 136918 136918 1 WSPIASTLPELVQR Unmodified 1595.8671 0.86714192 1647 Q13561;Q13561-3;Q13561-2 DCTN2 Dynactin subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 77.213 77.186 2 0.037754 25125 20211116_3428_TMUAki_TMT10x_P_F1 51.264 20.467 13942000 18853000 101480 21372000 12732000 13353000 13786000 5624600 5986600 7649000 13185000 12982000 17601000 1233500 21505000 12241000 13924000 13688000 6169300 6687100 7387000 12496000 2 2 2 2 2 2 2 2 2 2 2 9625700 12316000 39472 14543000 7212800 9788200 8788700 2786400 3423800 4503300 8335000 8962800 11500000 801030 14608000 6958000 10108000 8666300 3237800 3892100 4327400 7888500 1 1 1 1 1 1 1 1 1 1 1 4315900 6537200 62004 6829000 5519100 3564800 4997600 2838200 2562800 3145700 4850100 4019000 6101000 432450 6897300 5282600 3816600 5021200 2931500 2794900 3059600 4607900 1 1 1 1 1 1 1 1 1 1 1 836970000 410590000 426390000 21650 1647 19898 112949;112950 136919 136919 1 WSSLACNIALDAVK Unmodified 1546.7814 0.78136338 1094 P49368;P49368-2 CCT3 T-complex protein 1 subunit gamma yes no 0 0 0 0 By MS/MS 1 0 1 1 77.973 77.973 2 9.5083E-19 25458 20211116_3428_TMUAki_TMT10x_P_F1 168.61 139.52 5361100 9537000 114540 8964500 7303600 11607000 7320700 3975500 3661600 4642100 6307200 4992600 8896900 578430 9225200 7010400 11490000 7311500 4447100 3979000 4506300 6002400 1 1 1 1 1 1 1 1 1 1 1 5361100 9537000 114540 8964500 7303600 11607000 7320700 3975500 3661600 4642100 6307200 4992600 8896900 578430 9225200 7010400 11490000 7311500 4447100 3979000 4506300 6002400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1058100000 1058100000 0 21651 1094 19899 112951 136920 136920 1 WSTLVEDYGMELRK Oxidation (M) 1741.8345 0.83452116 74 O00232;O00232-2 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes no 0 0 1 1 By MS/MS 6 0 1 1 70.66 70.608 3 0.019938 21916 20211116_3434_TMUAki_TMT10x_P_F6 49.333 32.649 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21652 74 19900 112952 136921 136921 44 1 WSTLVEDYGMELRK Unmodified 1725.8396 0.83960654 74 O00232;O00232-2 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes no 0 0 0 1 By MS/MS 7 0 2 2 74.231 74.369 3 5.9973E-14 25888 20211116_3446_TMUAki_TMT10x_S_F7 130.24 108.36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21653 74 19900 112953;112954 136922;136923 136922 2 WSVHIAMHPQVNIYSVTR Oxidation (M) 2153.084 0.084027761 1859 Q16658 FSCN1 Fascin yes yes 0 0 1 0 By MS/MS By MS/MS 4.67 1.7 2 2 2 3 3 50.801 50.958 4 4.6705E-12 17599 20211116_3441_TMUAki_TMT10x_S_F3 127.62 108.29 20200000 33093000 287690 36942000 32662000 31463000 21784000 24967000 23906000 22564000 27093000 18809000 30894000 2032900 37333000 31056000 32245000 22731000 25641000 24341000 22136000 26037000 9 9 7 9 9 9 9 9 9 9 9 10599000 16582000 137900 19024000 22395000 22688000 13235000 12158000 11774000 10909000 13619000 9869500 15482000 1088100 19289000 21246000 22650000 13858000 12855000 12108000 10706000 13081000 4 4 2 4 4 4 4 4 4 4 4 9600100 16511000 149790 17919000 10267000 8775700 8549700 12809000 12132000 11655000 13474000 8939800 15412000 944850 18044000 9810100 9594700 8873000 12785000 12233000 11431000 12956000 5 5 5 5 5 5 5 5 5 5 5 2316600000 1166200000 1150400000 21654 1859 19901 112955;112956;112957;112958;112959;112960 136924;136925;136926;136927;136928;136929;136930;136931 136927 2477 8 WSYGAGIVLR Unmodified 1120.6029 0.60292873 3310 Q9Y512 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 0 0 0 0 By MS/MS 3 0 1 1 63.173 62.729 2 0.085887 22340 20211116_3441_TMUAki_TMT10x_S_F3 57.249 25.877 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21655 3310 19902 112961 136932 136932 1 WTCCALLAGSEYLK Unmodified 1670.7796 0.77964882 185 O15371;O15371-2;O15371-3 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 0 0 0 0 By MS/MS 1 0 1 1 77.108 77.045 3 0.00024703 27018 20211116_3439_TMUAki_TMT10x_S_F1 74.789 53.949 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21656 185 19903 112962 136933 136933 1 WTELAGCTADFR Unmodified 1425.6347 0.63469914 1577 Q12907 LMAN2 Vesicular integral-membrane protein VIP36 yes yes 0 0 0 0 By MS/MS 6 0 1 1 63.011 63.028 2 6.601E-07 18819 20211116_3434_TMUAki_TMT10x_P_F6 123.51 102.05 3336800 5749400 192.28 5544900 4722900 6478700 4292800 3548900 2952800 3277100 4102700 3106900 5364000 296230 5685100 4517700 6476600 4335400 3748000 3103500 3211800 3922100 1 1 1 1 1 1 1 1 1 1 1 3336800 5749400 192.28 5544900 4722900 6478700 4292800 3548900 2952800 3277100 4102700 3106900 5364000 296230 5685100 4517700 6476600 4335400 3748000 3103500 3211800 3922100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 616720000 616720000 0 21657 1577 19904 112963 136934 136934 1 WTEYGLTFTEK Unmodified 1373.6503 0.65033243 760 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.09 0.793 3 4 4 6 5 70.999 71.102 2;3 1.5172E-24 24487 20211116_3446_TMUAki_TMT10x_S_F7 256.91 214.52 131900000 217040000 1355100 217680000 142300000 156560000 155600000 91799000 81265000 101670000 146190000 122810000 202530000 11269000 221110000 136790000 161810000 154830000 96898000 88230000 98888000 139010000 15 15 8 15 15 15 15 15 15 15 15 72467000 114700000 997730 117250000 77114000 108300000 89650000 50550000 43640000 56020000 77982000 67479000 107040000 6755900 119300000 74300000 109590000 88856000 54474000 47628000 54487000 74163000 9 9 6 9 9 9 9 9 9 9 9 59432000 102340000 357340 100430000 65186000 48256000 65947000 41249000 37626000 45648000 68204000 55333000 95486000 4513200 101810000 62490000 52221000 65976000 42425000 40602000 44401000 64847000 6 6 2 6 6 6 6 6 6 6 6 11639000000 5637900000 6000800000 21658 760 19905 112964;112965;112966;112967;112968;112969;112970;112971;112972;112973;112974 136935;136936;136937;136938;136939;136940;136941;136942;136943;136944;136945;136946;136947;136948;136949 136948 15 WTGMIIGPPR Oxidation (M) 1142.5906 0.59064948 1627;1833 Q13404;Q13404-7;Q13404-2;Q13404-1;Q13404-8;Q15819 UBE2V1;UBE2V2 Ubiquitin-conjugating enzyme E2 variant 1;Ubiquitin-conjugating enzyme E2 variant 2 no no 0 0 1 0 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 3 4 53.935 53.756 2 0.00055316 15458 20211116_3428_TMUAki_TMT10x_P_F1 111.17 86.169 31777000 49715000 133500 57006000 38404000 40707000 33110000 30543000 28065000 28258000 39433000 29587000 46416000 2617500 57396000 36683000 42246000 33706000 31499000 29175000 27692000 37687000 8 8 3 8 8 8 8 8 8 8 8 14160000 21832000 78683 24273000 22629000 29023000 18315000 15800000 14670000 14597000 18859000 13184000 20380000 1292700 24662000 21589000 28977000 18690000 16695000 15233000 14306000 18063000 4 4 2 4 4 4 4 4 4 4 4 17617000 27883000 54820 32732000 15775000 11683000 14796000 14743000 13394000 13661000 20574000 16403000 26036000 1324800 32735000 15094000 13269000 15016000 14803000 13943000 13386000 19625000 4 4 1 4 4 4 4 4 4 4 4 3677000000 1974900000 1702100000 21659 1627;1833 19906 112975;112976;112977;112978;112979;112980;112981 136950;136951;136952;136953;136954;136955;136956 136950 2178 7 WTGMIIGPPR Unmodified 1126.5957 0.59573486 1627;1833 Q13404;Q13404-7;Q13404-2;Q13404-1;Q13404-8;Q15819 UBE2V1;UBE2V2 Ubiquitin-conjugating enzyme E2 variant 1;Ubiquitin-conjugating enzyme E2 variant 2 no no 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 63.92 63.722 2 0.00012184 22807 20211116_3441_TMUAki_TMT10x_S_F3 121.09 97.568 43378000 67846000 883720 74757000 48175000 47557000 48373000 32062000 26960000 32070000 50209000 40395000 63333000 4390400 75369000 46245000 49778000 48394000 33381000 29189000 31321000 47715000 6 6 4 6 6 6 6 6 6 6 6 17650000 26009000 453100 29082000 19250000 25213000 22006000 12806000 10593000 12693000 20243000 16438000 24281000 1908000 29394000 18554000 25645000 21824000 13643000 11618000 12401000 19229000 2 2 2 2 2 2 2 2 2 2 2 25727000 41837000 430630 45675000 28925000 22344000 26368000 19256000 16367000 19377000 29966000 23957000 39052000 2482400 45976000 27690000 24132000 26570000 19738000 17571000 18920000 28486000 4 4 2 4 4 4 4 4 4 4 4 2922700000 1605000000 1317700000 21660 1627;1833 19906 112982;112983;112984;112985;112986 136957;136958;136959;136960;136961;136962;136963 136961 7 WTLGFCDER Unmodified 1182.5128 0.51279309 422 O95336 PGLS 6-phosphogluconolactonase yes yes 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 61.165 61.171 2 0.061327 18433 20211116_3445_TMUAki_TMT10x_S_F6 53.404 41.178 4858700 7870200 24851 7964100 5076600 4061100 4565400 5194100 4468200 4385100 6101000 4524100 7344100 429030 8059700 4856300 4403400 4654600 5199600 4607800 4316100 5834900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4858700 7870200 24851 7964100 5076600 4061100 4565400 5194100 4468200 4385100 6101000 4524100 7344100 429030 8059700 4856300 4403400 4654600 5199600 4607800 4316100 5834900 1 1 1 1 1 1 1 1 1 1 1 163820000 0 163820000 21661 422 19907 112987;112988 136964;136965 136965 2 WTNQLNSLNQAVVSK Unmodified 1700.8846 0.8845829 1300 P61201;P61201-2 COPS2 COP9 signalosome complex subunit 2 yes no 0 0 0 0 By MS/MS 2 0 1 1 66.194 65.967 3 1.1893E-09 20878 20211116_3440_TMUAki_TMT10x_S_F2 125.89 97.61 4435800 7785800 122080 8485700 3979500 4280900 4257400 4537400 3729100 4487900 5843500 4131100 7267600 475150 8544500 3830100 4626200 4287600 4598900 3891800 4385100 5571600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4435800 7785800 122080 8485700 3979500 4280900 4257400 4537400 3729100 4487900 5843500 4131100 7267600 475150 8544500 3830100 4626200 4287600 4598900 3891800 4385100 5571600 2 2 2 2 2 2 2 2 2 2 2 234810000 0 234810000 21662 1300 19908 112989 136966;136967 136967 2 WTSQDSLLGMEFSGR Oxidation (M) 1728.7777 0.77773456 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 1 0 By MS/MS By MS/MS 5.14 0.639 1 4 2 4 3 66.931 66.978 2;3 8.6928E-07 20813 20211116_3445_TMUAki_TMT10x_S_F6 110.6 96.439 25693000 43269000 175840 42305000 28134000 36267000 28891000 24823000 24148000 25985000 31285000 23922000 40371000 2069700 43135000 26989000 37062000 29119000 25850000 25028000 25330000 29958000 8 8 3 8 8 8 8 8 8 8 8 12690000 21089000 0 20515000 14083000 23702000 15166000 12262000 12187000 13246000 15576000 11813000 19676000 820430 21017000 13514000 23692000 15235000 13074000 12649000 12896000 14920000 4 4 0 4 4 4 4 4 4 4 4 13004000 22180000 175840 21789000 14050000 12565000 13724000 12560000 11961000 12739000 15709000 12109000 20695000 1249300 22119000 13474000 13369000 13884000 12776000 12379000 12434000 15038000 4 4 3 4 4 4 4 4 4 4 4 3200700000 1543400000 1657300000 21663 1092 19909 112990;112991;112992;112993;112994;112995;112996 136968;136969;136970;136971;136972;136973;136974;136975;136976;136977 136977 1439 10 WTSQDSLLGMEFSGR Unmodified 1712.7828 0.78281994 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 74.809 74.845 2 7.7398E-50 23623 20211116_3434_TMUAki_TMT10x_P_F6 261.02 222.45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21664 1092 19909 112997;112998;112999 136978;136979;136980 136978 3 WTTDEQLLAVQAIR Unmodified 1642.8679 0.8678702 2169 Q8IZ40 RCOR2 REST corepressor 2 yes yes 0 0 0 0 By MS/MS 6 0 1 1 72.62 72.536 3 0.0046743 23089 20211116_3445_TMUAki_TMT10x_S_F6 63.79 29.843 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21665 2169 19910 113000 136981 136981 1 WTTSQLLQHPFVTVDSNKPIR Unmodified 2466.3019 0.30194269 2789 Q9H2G2;Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase yes no 0 0 0 1 By MS/MS 4 0 1 1 62.802 62.654 4 3.6102E-07 20072 20211116_3442_TMUAki_TMT10x_S_F4 89.028 72.722 6228200 10666000 144580 10449000 8060800 6806700 6854400 5819600 4636200 6411800 7999900 5799800 9952100 637760 10621000 7705000 7136700 6947100 5984500 4932900 6237700 7613100 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6228200 10666000 144580 10449000 8060800 6806700 6854400 5819600 4636200 6411800 7999900 5799800 9952100 637760 10621000 7705000 7136700 6947100 5984500 4932900 6237700 7613100 2 2 1 2 2 2 2 2 2 2 2 668560000 0 668560000 21666 2789 19911 113001 136982;136983 136983 2 WVGGPEIELIAIATGGR Unmodified 1737.9414 0.94136949 1079 P48643;P48643-2 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 4 4 4 4 81.136 81.149 2;3 6.7794E-51 28293 20211116_3435_TMUAki_TMT10x_P_F7 234.87 208.35 21426000 35112000 372910 30612000 23943000 28625000 34636000 15026000 14910000 19412000 25086000 19951000 32747000 1992800 31517000 23238000 28978000 33963000 16095000 16393000 18778000 23885000 13 13 9 13 13 13 13 13 13 13 13 8960900 14724000 88375 13062000 9545200 16405000 14692000 6591600 6285600 8058600 10568000 8343600 13732000 760320 13493000 9282400 16286000 14374000 7241100 6914400 7810000 10062000 6 6 4 6 6 6 6 6 6 6 6 12465000 20389000 284540 17549000 14398000 12219000 19944000 8434100 8624500 11353000 14518000 11608000 19014000 1232500 18024000 13956000 12692000 19590000 8853600 9478400 10968000 13823000 7 7 5 7 7 7 7 7 7 7 7 4522100000 1929900000 2592200000 21667 1079 19912 113002;113003;113004;113005;113006;113007;113008;113009 136984;136985;136986;136987;136988;136989;136990;136991;136992;136993;136994;136995;136996;136997 136987 14 WVGGQHPCFIIAEIGQNHQGDLDVAKR Unmodified 3044.5039 0.50390675 2921 Q9NR45 NANS Sialic acid synthase yes yes 0 0 0 1 By MS/MS 8 0 1 1 60.295 60.297 5 1.3213E-12 17703 20211116_3447_TMUAki_TMT10x_S_F8 109.97 93.169 3192600 5561300 52000 4745900 4226600 3616500 3492200 3923900 3004200 3774900 4243600 2973000 5186200 327630 4882300 4037400 3760800 3565500 3969600 3121600 3692900 4055300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3192600 5561300 52000 4745900 4226600 3616500 3492200 3923900 3004200 3774900 4243600 2973000 5186200 327630 4882300 4037400 3760800 3565500 3969600 3121600 3692900 4055300 1 1 1 1 1 1 1 1 1 1 1 1501000000 0 1501000000 21668 2921 19913 113010 136998 136998 1 WVGTIHGAAGTVYEDLR Unmodified 1843.9217 0.92169668 108 O00762;O00762-2 UBE2C Ubiquitin-conjugating enzyme E2 C yes no 0 0 0 0 By MS/MS By MS/MS 5.71 1.03 1 2 2 2 4 3 59.673 59.938 3 1.703E-29 17905 20211116_3445_TMUAki_TMT10x_S_F6 188.44 174.18 47912000 78470000 450880 81000000 53713000 61313000 51468000 44004000 37711000 39628000 56633000 44614000 73230000 3757300 82160000 51470000 63287000 51897000 45483000 39638000 38883000 54046000 11 11 9 11 11 11 11 11 11 11 11 22363000 36028000 109390 36233000 26185000 38308000 25852000 22270000 18840000 19522000 26865000 20822000 33619000 1956700 36980000 25102000 38537000 26023000 23370000 19758000 19180000 25667000 5 5 4 5 5 5 5 5 5 5 5 25549000 42442000 341490 44767000 27528000 23005000 25616000 21733000 18872000 20106000 29768000 23791000 39612000 1800600 45180000 26368000 24750000 25874000 22112000 19880000 19703000 28379000 6 6 5 6 6 6 6 6 6 6 6 7447000000 3429600000 4017400000 21669 108 19914 113011;113012;113013;113014;113015;113016;113017 136999;137000;137001;137002;137003;137004;137005;137006;137007;137008;137009;137010 137007 12 WVHAEMVNK Oxidation (M) 1128.5386 0.53861391 1041 P46063 RECQL ATP-dependent DNA helicase Q1 yes yes 0 0 1 0 By MS/MS 6 0 1 1 35.44 35.606 3 0.028573 8130 20211116_3445_TMUAki_TMT10x_S_F6 50.04 21.872 127190 205970 3250.2 231800 132680 97337 124420 94374 86344 103060 146220 118450 192280 13651 232640 127210 107390 125450 96362 91631 100290 139200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 127190 205970 3250.2 231800 132680 97337 124420 94374 86344 103060 146220 118450 192280 13651 232640 127210 107390 125450 96362 91631 100290 139200 1 1 1 1 1 1 1 1 1 1 1 2329900 0 2329900 21670 1041 19915 113018 137011 137011 1348 1 WVNSHLAR Unmodified 981.51445 0.51444807 1475;154 Q01082;Q01082-3;Q01082-2;P11277;P11277-2;P11277-3;O15020;O15020-2 SPTBN1;SPTB;SPTBN2 Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, erythrocytic;Spectrin beta chain, non-erythrocytic 2 no no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 32.779 32.795 3 0.0083561 9052 20211116_3439_TMUAki_TMT10x_S_F1 69.812 51.992 460650 750620 30973 753350 679590 633950 618660 529080 492890 493740 606510 429140 700420 70123 766560 651970 650830 626830 542170 510960 483670 581560 2 2 2 2 2 2 2 2 2 2 2 203000 315020 7801.2 318160 402550 361540 300980 220380 208540 198790 256170 189070 293960 26895 325000 383910 362460 307750 230540 217890 195040 245650 1 1 1 1 1 1 1 1 1 1 1 257640 435600 23172 435190 277040 272410 317680 308700 284340 294950 350340 240070 406460 43228 441560 268060 288370 319080 311630 293070 288630 335920 1 1 1 1 1 1 1 1 1 1 1 30661000 19380000 11281000 21671 1475;154 19916 113019;113020 137012;137013 137013 2 WVPEITHHCPK Unmodified 1402.6816 0.68158975 1281 P60953;P60953-1 CDC42 Cell division control protein 42 homolog yes no 0 0 0 0 By MS/MS By MS/MS 7 0.816 2 2 2 5 1 37.565 37.793 3;4 8.4575E-06 8584 20211116_3434_TMUAki_TMT10x_P_F6 112.15 94.339 3582200 5354700 5172.4 5846400 6739900 5324100 4005900 2579400 2710100 2569700 3993900 3335000 4998400 295580 5921800 6390800 5394400 4166200 2760800 2859300 2510100 3813000 8 8 3 8 8 8 8 8 8 8 8 3053200 4521000 5172.4 4985700 6226200 4886900 3403300 2153400 2262200 2120400 3327300 2842500 4220300 260990 5052000 5896600 4923100 3564400 2326400 2389100 2072200 3176800 7 7 3 7 7 7 7 7 7 7 7 529030 833770 0 860690 513710 437200 602590 426020 447950 449370 666540 492500 778100 34581 869810 494220 471260 601800 434410 470230 437920 636220 1 1 0 1 1 1 1 1 1 1 1 260790000 234940000 25846000 21672 1281 19917 113021;113022;113023;113024;113025;113026 137014;137015;137016;137017;137018;137019;137020;137021;137022 137015 9 WVPSLNEVPLHYLKPNSFVK Unmodified 2366.2787 0.27868805 2663 Q9BTE3;Q9BTE3-2 MCMBP Mini-chromosome maintenance complex-binding protein yes no 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 76.099 76.098 4 7.7715E-13 24167 20211116_3444_TMUAki_TMT10x_S_F5 131.54 115.6 23371000 37875000 792570 39491000 24724000 25374000 24831000 12901000 12305000 15098000 22749000 21767000 35347000 2695200 39962000 23757000 26439000 24794000 13812000 13437000 14655000 21622000 5 5 5 5 5 5 5 5 5 5 5 9696100 15512000 294750 16256000 9113400 13710000 10785000 4051700 3581400 5217100 8614400 9030300 14478000 1070400 16494000 8798200 13906000 10629000 4641800 4137300 5047200 8154200 2 2 2 2 2 2 2 2 2 2 2 13675000 22363000 497820 23235000 15611000 11664000 14046000 8849000 8723900 9881300 14135000 12736000 20870000 1624800 23469000 14959000 12533000 14165000 9170000 9300000 9608100 13468000 3 3 3 3 3 3 3 3 3 3 3 3516400000 1831900000 1684500000 21673 2663 19918 113027;113028;113029;113030 137023;137024;137025;137026;137027 137027 5 WVTYFNKPDIDAWELRK Unmodified 2180.1055 0.10547471 747 P20674 COX5A Cytochrome c oxidase subunit 5A, mitochondrial yes yes 0 0 0 2 By MS/MS By MS/MS 2.8 0.748 2 2 1 2 3 74.813 74.683 4 2.9963E-60 25494 20211116_3429_TMUAki_TMT10x_P_F2 284.15 269.22 106230000 163350000 932440 176160000 113000000 72804000 119180000 19690000 14789000 24459000 88189000 98913000 152470000 9634200 177260000 108550000 79350000 117340000 22842000 22218000 23692000 82801000 5 5 4 5 5 5 5 5 5 5 5 38272000 59121000 180830 61719000 30409000 30137000 42124000 6520600 5354900 7866600 31089000 35636000 55176000 3231400 62308000 29463000 32119000 40977000 7861900 7969800 7627500 29194000 2 2 2 2 2 2 2 2 2 2 2 67954000 104230000 751610 114440000 82590000 42667000 77057000 13169000 9434500 16593000 57100000 63276000 97293000 6402800 114950000 79089000 47231000 76358000 14980000 14248000 16064000 53607000 3 3 2 3 3 3 3 3 3 3 3 11592000000 5428400000 6164000000 21674 747 19919 113031;113032;113033;113034;113035 137028;137029;137030;137031;137032 137028 5 WVYGPGGAR Unmodified 961.477 0.47699993 369 O75935;O75935-3;O75935-2 DCTN3 Dynactin subunit 3 yes no 0 0 0 0 By MS/MS By MS/MS 4 3.29 2 1 2 2 3 43.397 43.355 2 0.00014827 11384 20211116_3428_TMUAki_TMT10x_P_F1 137.59 119.45 7680300 12308000 133110 15175000 10272000 9057100 7771400 8336100 8628300 7578800 10673000 7151900 11496000 769560 15187000 9792800 9587900 8040100 8489300 8812800 7433100 10233000 5 5 4 5 5 5 5 5 5 5 5 2201100 3325000 52692 4100700 5385900 4903400 2891100 2052100 2272500 1846200 2776800 2049900 3105500 276200 4140600 5104700 4881700 3043900 2224200 2356800 1811600 2663000 1 1 1 1 1 1 1 1 1 1 1 5479100 8983100 80422 11075000 4886200 4153600 4880300 6284000 6355800 5732600 7896500 5102000 8390000 493360 11047000 4688100 4706200 4996300 6265100 6456000 5621500 7569800 4 4 3 4 4 4 4 4 4 4 4 251490000 105170000 146320000 21675 369 19920 113036;113037;113038;113039;113040 137033;137034;137035;137036;137037;137038 137033 6 WWEEERYPEGIK Unmodified 1620.7573 0.75725712 624 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.25 0.829 1 1 2 3 1 57.52 57.579 3 1.9873E-07 17692 20211116_3433_TMUAki_TMT10x_P_F5 131.26 121.16 27809000 44617000 354740 51597000 42676000 45884000 40388000 21147000 19370000 23669000 34334000 25896000 41658000 2794100 52059000 40881000 46540000 40436000 22825000 21156000 23013000 32658000 5 5 3 5 5 5 5 5 5 5 5 20970000 33153000 235820 38932000 35950000 41072000 34260000 16146000 14731000 18030000 26210000 19526000 30957000 2117800 39341000 34439000 41149000 34236000 17730000 16248000 17531000 24928000 4 4 2 4 4 4 4 4 4 4 4 6839500 11464000 118920 12665000 6726600 4812000 6127100 5001500 4638900 5639400 8124400 6369100 10701000 676280 12718000 6441900 5390800 6200300 5094700 4908100 5481500 7729400 1 1 1 1 1 1 1 1 1 1 1 1642800000 1316800000 325960000 21676 624 19921 113041;113042;113043;113044 137039;137040;137041;137042;137043 137041 5 WYHPGCFVK Unmodified 1192.5488 0.54878467 586 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 1.37 2 2 1 1 3 3 48.913 48.719 3 0.00058859 15456 20211116_3430_TMUAki_TMT10x_P_F3 96.253 79.311 18712000 32109000 300620 34301000 32084000 32276000 23013000 21453000 17712000 19113000 24489000 17425000 29970000 1974800 34808000 30551000 32762000 23653000 22288000 18491000 18764000 23414000 4 4 3 4 4 4 4 4 4 4 4 10593000 17750000 265670 19233000 22941000 26076000 16814000 12481000 10320000 10815000 13719000 9864800 16568000 1298700 19618000 21859000 25837000 17175000 13326000 10904000 10631000 13129000 2 2 2 2 2 2 2 2 2 2 2 8119400 14360000 34950 15068000 9142200 6199700 6198100 8972300 7391300 8298800 10770000 7559800 13402000 676090 15189000 8691200 6925200 6477900 8962400 7587000 8132800 10285000 2 2 1 2 2 2 2 2 2 2 2 2468700000 1550900000 917800000 21677 586 19922 113045;113046;113047;113048;113049;113050 137044;137045;137046;137047;137048;137049 137045 6 WYQMGAYQPFFR Oxidation (M) 1608.7184 0.71836919 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 1 0 By MS/MS By MS/MS 4 0 2 1 1 69.7 69.648 2 0.00059499 22947 20211116_3442_TMUAki_TMT10x_S_F4 88.37 74.707 4352100 8056900 20225 6797000 6647200 7394900 5438400 4673900 3845900 4412100 5938000 4051700 7513200 330440 7032000 6339200 7435400 5530300 4881600 4056500 4319900 5663400 2 2 1 2 2 2 2 2 2 2 2 2462300 4191100 0 3649400 3187800 5410100 3418300 2512200 2038800 2335900 3095300 2292000 3908700 132930 3787600 3057100 5337700 3412600 2695200 2172000 2288600 2953200 1 1 0 1 1 1 1 1 1 1 1 1889800 3865700 20225 3147600 3459400 1984800 2020100 2161700 1807100 2076200 2842700 1759700 3604400 197510 3244400 3282100 2097700 2117700 2186400 1884500 2031300 2710100 1 1 1 1 1 1 1 1 1 1 1 879210000 590210000 289000000 21678 1730 19923 113051;113052 137050;137051 137051 2328 2 YAACNAVGQMATDFAPGFQK Unmodified 2145.9612 0.96119501 84 O00410;O00410-2;O00410-3 IPO5 Importin-5 yes no 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 1 2 2 1 74.003 73.966 3 0.046387 23445 20211116_3447_TMUAki_TMT10x_S_F8 35.852 25.217 41886000 70981000 1419800 77282000 39498000 72768000 56966000 31668000 28086000 41264000 49369000 39009000 66256000 4519000 78327000 38382000 73486000 55976000 34559000 30591000 39906000 46966000 4 4 3 4 4 4 4 4 4 4 4 34503000 58971000 1419800 64571000 31851000 65295000 48308000 26178000 23068000 36060000 41188000 32137000 55047000 4146700 65488000 31040000 65594000 47359000 28886000 25215000 34811000 39172000 3 3 3 3 3 3 3 3 3 3 3 7382700 12010000 0 12711000 7647400 7473300 8658300 5489500 5017700 5204300 8181000 6872100 11209000 372310 12839000 7342200 7891800 8616900 5672900 5376200 5094600 7794000 1 1 0 1 1 1 1 1 1 1 1 3558600000 2171600000 1386900000 21679 84 19924 113053;113054;113055 137052;137053;137054;137055 137055 4 YAACNAVGQMATDFAPGFQK Oxidation (M) 2161.9561 0.95610963 84 O00410;O00410-2;O00410-3 IPO5 Importin-5 yes no 0 0 1 0 By MS/MS By MS/MS 6.8 0.4 1 4 3 2 60.458 61.066 3;4 2.8137E-09 20304 20211116_3446_TMUAki_TMT10x_S_F7 113.29 103.09 21444000 36343000 29928 37679000 24471000 39430000 24894000 27110000 28358000 26413000 26952000 19966000 33917000 1747000 38370000 23470000 39783000 25336000 28164000 28648000 25825000 26043000 6 6 1 6 6 6 6 6 6 6 6 13233000 21134000 0 22803000 15955000 30969000 16598000 16621000 17436000 15550000 16059000 12321000 19726000 1060200 23267000 15310000 30723000 16828000 17591000 17653000 15231000 15534000 3 3 0 3 3 3 3 3 3 3 3 8210800 15209000 29928 14876000 8516000 8460400 8296800 10489000 10922000 10863000 10893000 7645100 14191000 686760 15104000 8160100 9060200 8508500 10573000 10995000 10594000 10509000 3 3 1 3 3 3 3 3 3 3 3 5437700000 3422800000 2014900000 21680 84 19924 113056;113057;113058;113059;113060 137056;137057;137058;137059;137060;137061;137062 137060 59 7 YAACNAVGQMATDFAPGFQKK Oxidation (M) 2290.0511 0.051072653 84 O00410;O00410-2;O00410-3 IPO5 Importin-5 yes no 0 0 1 1 By MS/MS By MS/MS 3.8 3.43 3 2 3 2 54.914 54.864 4;5 8.3734E-08 15999 20211116_3428_TMUAki_TMT10x_P_F1 97.32 84.827 17590000 32487000 384270 29856000 24831000 33412000 19951000 33471000 32216000 29766000 27258000 16381000 30304000 1912600 30697000 23710000 33820000 20872000 33918000 32062000 29224000 26449000 7 7 6 7 7 7 7 7 7 7 7 7463000 13055000 175920 12180000 12166000 22431000 11099000 14052000 13933000 12710000 10587000 6950100 12178000 848560 12641000 11650000 22031000 11402000 14670000 13931000 12469000 10317000 3 3 3 3 3 3 3 3 3 3 3 10127000 19432000 208360 17675000 12665000 10981000 8851200 19419000 18284000 17056000 16671000 9431100 18126000 1064000 18056000 12060000 11789000 9469500 19247000 18131000 16755000 16132000 4 4 3 4 4 4 4 4 4 4 4 2999800000 1996000000 1003900000 21681 84 19925 113061;113062;113063;113064;113065 137063;137064;137065;137066;137067;137068;137069 137065 59 7 YAACNAVGQMATDFAPGFQKK Unmodified 2274.0562 0.05615803 84 O00410;O00410-2;O00410-3 IPO5 Importin-5 yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 66.873 66.609 4 7.4357E-14 22389 20211116_3429_TMUAki_TMT10x_P_F2 125.73 116.32 19957000 31491000 710160 27960000 23153000 21369000 23406000 16059000 10404000 14292000 21418000 18587000 29371000 2361200 28674000 22250000 22057000 23326000 16542000 11544000 14031000 20320000 3 3 3 3 3 3 3 3 3 3 3 6158200 10613000 138520 7908300 6652000 10001000 7968900 4763600 2877700 4535800 6954300 5734900 9892900 646570 8290100 6419700 9941100 7856700 5100700 3295000 4439300 6582300 1 1 1 1 1 1 1 1 1 1 1 13799000 20878000 571630 20051000 16501000 11369000 15437000 11295000 7526100 9755900 14464000 12852000 19478000 1714600 20384000 15830000 12116000 15469000 11442000 8248900 9591500 13738000 2 2 2 2 2 2 2 2 2 2 2 2047500000 1210000000 837490000 21682 84 19925 113066;113067 137070;137071;137072 137070 3 YAALSVDGEDENEGEDYAE Unmodified 2074.8127 0.8127189 788 P23588;P23588-2 EIF4B Eukaryotic translation initiation factor 4B yes no 0 0 0 0 By MS/MS By MS/MS 1 0 4 3 1 63.642 63.377 2;3 6.4256E-22 19649 20211116_3428_TMUAki_TMT10x_P_F1 151.15 149.9 3773800 6795100 0 6396000 3981300 3537300 3328200 3847500 3742100 3242400 4817800 3513700 6339000 306910 6510400 3800500 3786900 3422900 3878100 3827000 3191600 4614300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3773800 6795100 0 6396000 3981300 3537300 3328200 3847500 3742100 3242400 4817800 3513700 6339000 306910 6510400 3800500 3786900 3422900 3878100 3827000 3191600 4614300 1 1 0 1 1 1 1 1 1 1 1 472040000 0 472040000 21683 788 19926 113068;113069;113070;113071 137073;137074;137075;137076 137075 4 YAALYQPLFDK Unmodified 1327.6812 0.68123863 2602 Q99733;Q99733-2 NAP1L4 Nucleosome assembly protein 1-like 4 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 4 4 4 4 73.775 73.713 2;3 3.4819E-14 23279 20211116_3447_TMUAki_TMT10x_S_F8 180.67 165.52 65180000 104510000 249320 114420000 64548000 69785000 63526000 41862000 45339000 48835000 66918000 60688000 97556000 5214700 115360000 61854000 73219000 63927000 44180000 47686000 47408000 63886000 12 12 8 12 12 12 12 12 12 12 12 30204000 47063000 136910 51126000 32177000 43718000 30877000 18593000 20392000 22250000 29236000 28121000 43930000 2370000 51760000 30810000 44429000 31063000 20282000 21518000 21580000 27929000 5 5 2 5 5 5 5 5 5 5 5 34976000 57447000 112410 63298000 32370000 26068000 32649000 23269000 24947000 26585000 37682000 32566000 53626000 2844700 63604000 31044000 28789000 32864000 23899000 26168000 25828000 35957000 7 7 6 7 7 7 7 7 7 7 7 5315700000 2978700000 2337000000 21684 2602 19927 113072;113073;113074;113075;113076;113077;113078;113079 137077;137078;137079;137080;137081;137082;137083;137084;137085;137086;137087;137088;137089 137087 13 YAAQENLEYNVEPQEISHPDVGR Unmodified 2657.2358 0.23577319 398 O94952;O94952-1 FBXO21 F-box only protein 21 yes no 0 0 0 0 By MS/MS 3 0 1 1 52.351 51.983 3 3.2872E-18 17945 20211116_3441_TMUAki_TMT10x_S_F3 134.81 126.86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21685 398 19928 113080 137090 137090 1 YAAVTQFEATDARR Unmodified 1597.7849 0.78486885 1246 P55786;A6NEC2 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 0 0 0 1 By MS/MS By MS/MS 5 0.707 1 2 1 1 3 40.431 40.575 3 8.9637E-25 9879 20211116_3444_TMUAki_TMT10x_S_F5 198.72 147.28 2962300 4697000 49115 5652100 2719500 2490900 2164100 4110600 4423100 3780400 4453700 2758600 4386400 287970 5651300 2596600 2769000 2294100 4087700 4402000 3705800 4295300 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2962300 4697000 49115 5652100 2719500 2490900 2164100 4110600 4423100 3780400 4453700 2758600 4386400 287970 5651300 2596600 2769000 2294100 4087700 4402000 3705800 4295300 2 2 2 2 2 2 2 2 2 2 2 571110000 0 571110000 21686 1246 19929 113081;113082;113083;113084 137091;137092;137093;137094 137093 4 YADLPGIAR Unmodified 974.51853 0.5185304 1647 Q13561;Q13561-3;Q13561-2 DCTN2 Dynactin subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 3 1 48.709 48.889 2 0.0016206 13037 20211116_3444_TMUAki_TMT10x_S_F5 95.741 72.722 4385800 7219200 37525 8829400 4117900 4090400 3531900 5634500 6081500 5074600 6883500 4083900 6742300 394840 8822900 3936000 4494000 3692100 5634100 6103700 4979200 6615500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4385800 7219200 37525 8829400 4117900 4090400 3531900 5634500 6081500 5074600 6883500 4083900 6742300 394840 8822900 3936000 4494000 3692100 5634100 6103700 4979200 6615500 1 1 1 1 1 1 1 1 1 1 1 441230000 0 441230000 21687 1647 19930 113085;113086;113087;113088 137095;137096;137097;137098 137098 4 YADLSDAANRNHEALR Unmodified 1814.866 0.86597272 995 P41219;P41219-2 PRPH Peripherin yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 33.824 33.809 4 0.00073842 7944 20211116_3431_TMUAki_TMT10x_P_F4 70.451 57.573 3195200 5376100 20023 4507800 4588300 5460600 3389700 2771000 2893900 2667200 3782200 2975200 5013200 303080 4674300 4370600 5443700 3485700 2950000 2997200 2609200 3621000 2 2 2 2 2 2 2 2 2 2 2 3195200 5376100 20023 4507800 4588300 5460600 3389700 2771000 2893900 2667200 3782200 2975200 5013200 303080 4674300 4370600 5443700 3485700 2950000 2997200 2609200 3621000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 93795000 93795000 0 21688 995 19931 113089;113090 137099 137099 1 YADLTEDQLPSCESLK Unmodified 1867.851 0.85095909 722 P18669 PGAM1 Phosphoglycerate mutase 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.55 0.988 2 3 4 2 5 6 62.375 62.24 2;3 3.0967E-52 19867 20211116_3442_TMUAki_TMT10x_S_F4 262.24 241.94 76526000 124670000 546690 176690000 79157000 87273000 69235000 60435000 63527000 63961000 86351000 71255000 116520000 6490700 175240000 75657000 93820000 70570000 62906000 65687000 62322000 82593000 17 17 10 17 17 17 17 17 17 17 17 37188000 56838000 174170 78384000 52218000 63373000 43102000 31912000 32037000 31736000 42832000 34626000 53117000 3266200 78218000 49838000 64779000 43855000 34029000 33459000 31002000 40984000 9 9 4 9 9 9 9 9 9 9 9 39338000 67831000 372510 98302000 26939000 23901000 26132000 28522000 31490000 32225000 43520000 36629000 63408000 3224400 97020000 25819000 29041000 26715000 28877000 32228000 31320000 41610000 8 8 6 8 8 8 8 8 8 8 8 9373100000 4719800000 4653300000 21689 722 19932 113091;113092;113093;113094;113095;113096;113097;113098;113099;113100;113101 137100;137101;137102;137103;137104;137105;137106;137107;137108;137109;137110;137111;137112;137113;137114;137115;137116 137112 17 YADLTEDQLPSCESLKDTIAR Unmodified 2424.1479 0.14786939 722 P18669 PGAM1 Phosphoglycerate mutase 1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.91 1.5 1 4 4 4 5 4 12 10 65.052 65.075 2;3;4 6.3118E-80 19630 20211116_3434_TMUAki_TMT10x_P_F6 244 185.51 244940000 464250000 1645700 320300000 314330000 455700000 298390000 377960000 323660000 364360000 352040000 228050000 432650000 19222000 338950000 300860000 454140000 304280000 387800000 329170000 356410000 338720000 36 36 21 36 36 36 36 36 36 36 36 121540000 222250000 636750 154900000 158950000 304650000 182440000 179740000 157390000 176120000 169650000 113150000 207130000 8501900 165020000 152860000 298310000 183050000 188940000 161650000 172160000 163270000 19 19 8 19 19 19 19 19 19 19 19 123400000 242000000 1008900 165400000 155390000 151050000 115950000 198220000 166270000 188240000 182400000 114900000 225520000 10720000 173930000 148000000 155820000 121230000 198860000 167520000 184260000 175450000 17 17 13 17 17 17 17 17 17 17 17 61252000000 34238000000 27014000000 21690 722 19933 113102;113103;113104;113105;113106;113107;113108;113109;113110;113111;113112;113113;113114;113115;113116;113117;113118;113119;113120;113121;113122;113123 137117;137118;137119;137120;137121;137122;137123;137124;137125;137126;137127;137128;137129;137130;137131;137132;137133;137134;137135;137136;137137;137138;137139;137140;137141;137142;137143;137144;137145;137146;137147;137148;137149;137150;137151;137152;137153 137133 37 YADPLVSMDVTGNGK Oxidation (M) 1581.7345 0.73447277 3382 yes no 0 0 1 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 73.007 72.86 2 0.10281 26780 20211116_3430_TMUAki_TMT10x_P_F3 42.001 8.7761 + 5688500 10794000 79.468 8088500 6816500 9912100 6488600 8527100 7765600 8582900 9090800 5296500 10062000 478370 8469900 6527200 9954200 6638400 8741300 7891300 8380200 8728600 2 2 1 2 2 2 2 2 2 2 2 2363000 4351400 79.468 3197400 2023300 5178500 2426900 3462600 3299900 3244900 3563100 2200200 4056000 191220 3373000 1950200 5114700 2467600 3600600 3328200 3178100 3429100 1 1 1 1 1 1 1 1 1 1 1 3325500 6442300 0 4891100 4793200 4733600 4061700 5064500 4465700 5338000 5527700 3096300 6005500 287150 5097000 4577000 4839500 4170700 5140700 4563000 5202100 5299500 1 1 0 1 1 1 1 1 1 1 1 1698100000 658660000 1039400000 21691 3382 19934 113124;113125 137154;137155 137154 3311 2 YADTLFDILVAGSMLAPGGTR Oxidation (M) 2183.0933 0.093255043 3349 Q9Y6E2;Q9Y6E2-2 BZW2 Basic leucine zipper and W2 domain-containing protein 2 yes no 0 0 1 0 By MS/MS By MS/MS 4.6 2.8 2 1 2 2 3 82.812 82.807 3 2.9484E-10 27617 20211116_3440_TMUAki_TMT10x_S_F2 108.25 92.402 1089800 1882300 0 1692300 1462900 1455800 1631900 1262400 1387700 1471700 1734000 1014700 1755700 11621 1736300 1406800 1493400 1638900 1299500 1434700 1428700 1662000 2 2 0 2 2 2 2 2 2 2 2 165180 273950 0 248430 165060 336170 204080 190340 222700 238970 220760 153790 255530 11621 256560 159120 333780 205540 202340 225680 231390 213010 1 1 0 1 1 1 1 1 1 1 1 924660 1608400 0 1443800 1297800 1119700 1427800 1072100 1165000 1232700 1513300 860950 1500200 0 1479700 1247700 1159600 1433400 1097200 1209000 1197300 1449000 1 1 0 1 1 1 1 1 1 1 1 929050000 342290000 586760000 21692 3349 19935 113126;113127;113128;113129;113130 137156;137157 137157 3297 2 YADVIVHR Unmodified 971.51886 0.51886475 3241 Q9Y2L1;Q9Y2L1-2 DIS3 Exosome complex exonuclease RRP44 yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 34.144 34.195 3 0.0044686 8167 20211116_3431_TMUAki_TMT10x_P_F4 80.438 35.991 1180000 1981400 15485 1925500 1875700 1977800 1470100 1788900 1649700 1512800 1770300 1098800 1848700 118120 1969000 1789000 2007400 1517900 1820100 1674700 1488800 1704000 3 3 2 3 3 3 3 3 3 3 3 752250 1229200 8061.4 1269100 1430000 1591200 1020400 1024100 991020 926300 1099100 700450 1147100 75485 1296700 1361100 1588400 1055600 1066900 1013300 908710 1056900 2 2 1 2 2 2 2 2 2 2 2 427790 752230 7423.6 656320 445690 386590 449610 764780 658640 586470 671190 398370 701550 42636 672290 427900 418960 462330 753150 661350 580120 647080 1 1 1 1 1 1 1 1 1 1 1 135780000 117520000 18268000 21693 3241 19936 113131;113132;113133 137158;137159;137160 137158 3 YAEAVTR Unmodified 808.40792 0.40791731 473 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 30.345 30.184 2 0.014773 9129 20211116_3441_TMUAki_TMT10x_S_F3 93.561 28.803 1091700 1917000 8926.7 1583700 1447000 1771100 1411700 989570 1042500 1050700 1414300 1016600 1787500 102300 1642000 1387000 1775200 1422300 1047400 1089900 1023700 1352800 3 3 2 3 3 3 3 3 3 3 3 647800 1086700 2342.1 952580 868720 1250500 809130 574840 611870 629080 831370 603170 1013500 57475 985720 831520 1240400 817740 620180 638890 612160 795200 2 2 1 2 2 2 2 2 2 2 2 443940 830290 6584.6 631100 578230 520570 602550 414730 430640 421650 582970 413400 774010 44823 656240 555450 534770 604600 427220 451030 411520 557650 1 1 1 1 1 1 1 1 1 1 1 78297000 23074000 55223000 21694 473 19937 113134;113135;113136 137161;137162 137162 2 YAEERDRAEAEAR Unmodified 1564.723 0.72299688 934;935 P35579;P35579-2;P35580;P35580-2;P35580-5;P35580-3;P35580-4 MYH9;MYH10 Myosin-9;Myosin-10 no no 0 0 0 2 By MS/MS By matching 1.5 0.5 2 2 3 1 25.322 25.228 3;4 2.1629E-11 6167 20211116_3429_TMUAki_TMT10x_P_F2 145.52 117.87 274160 460510 5935.6 395260 404400 563760 384120 333980 340280 298450 338480 255300 429470 25688 410360 387490 558760 389330 350100 348030 292950 326570 3 3 1 3 3 3 3 3 3 3 3 274160 460510 5935.6 395260 404400 563760 384120 333980 340280 298450 338480 255300 429470 25688 410360 387490 558760 389330 350100 348030 292950 326570 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39801000 26563000 13237000 21695 934;935 19938 113137;113138;113139;113140 137163;137164;137165 137165 3 YAELLVSQGVVNQPEYEEEISKYDK Unmodified 2929.4233 0.42329919 1491 Q02218;Q02218-2 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 0 0 0 1 By MS/MS 4 0 1 1 75.089 75.118 4 3.0842E-29 24721 20211116_3431_TMUAki_TMT10x_P_F4 162.01 147.7 1984000 3695500 12078 3015800 1464600 3392800 2438300 2205100 1922500 1996200 2209900 1847400 3445800 168470 3130200 1429600 3406400 2406400 2295700 1988600 1958200 2123000 1 1 1 1 1 1 1 1 1 1 1 1984000 3695500 12078 3015800 1464600 3392800 2438300 2205100 1922500 1996200 2209900 1847400 3445800 168470 3130200 1429600 3406400 2406400 2295700 1988600 1958200 2123000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 499860000 499860000 0 21696 1491 19939 113141 137166 137166 1 YAEQLPVAQIIHQKPK Unmodified 1862.0414 0.04141789 2353 Q92643;Q92643-2 PIGK GPI-anchor transamidase yes no 0 0 0 1 By MS/MS By matching 1 0 2 1 1 53.076 52.932 4 1.7754E-05 15240 20211116_3428_TMUAki_TMT10x_P_F1 96.993 85.553 2264600 3494300 41381 3730900 3862900 5491900 3443900 3492100 3134200 3160500 3007500 2108900 3261400 248710 3815800 3695900 5441200 3505600 3641600 3197600 3100400 2905100 1 1 1 1 1 1 1 1 1 1 1 2264600 3494300 41381 3730900 3862900 5491900 3443900 3492100 3134200 3160500 3007500 2108900 3261400 248710 3815800 3695900 5441200 3505600 3641600 3197600 3100400 2905100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 504780000 368790000 135990000 21697 2353 19940 113142;113143 137167 137167 1 YAESLGQYAAASQSCNFALR Unmodified 2206.0113 0.011316328 1745 Q14CX7;Q14CX7-2 NAA25 N-alpha-acetyltransferase 25, NatB auxiliary subunit yes no 0 0 0 0 By MS/MS 8 0 1 1 64.979 65.149 3 8.7138E-08 20268 20211116_3436_TMUAki_TMT10x_P_F8 99.092 87.652 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21698 1745 19941 113144 137168 137168 1 YAEYFLRPMLQYVCDNSPEVR Oxidation (M) 2665.2305 0.23049358 84 O00410;O00410-2;O00410-3 IPO5 Importin-5 yes no 0 0 1 1 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 68.734 68.904 3 7.4019E-14 21234 20211116_3447_TMUAki_TMT10x_S_F8 130.36 115.75 3911800 7084300 43849 6273000 4497600 6635800 4645700 4448900 3339900 4649100 4911900 3642100 6607300 309160 6462200 4314700 6688600 4664200 4639700 3510700 4532300 4689700 2 2 1 2 2 2 2 2 2 2 2 2089900 3419400 0 3226600 2017200 4366300 2397400 2244000 1558000 2208200 2416400 1945400 3190000 108030 3322300 1939600 4330100 2385900 2387600 1652200 2158100 2304400 1 1 0 1 1 1 1 1 1 1 1 1821800 3664800 43849 3046400 2480400 2269500 2248300 2204900 1781900 2440900 2495600 1696600 3417400 201130 3139900 2375100 2358500 2278300 2252100 1858500 2374200 2385300 1 1 1 1 1 1 1 1 1 1 1 1364800000 781950000 582880000 21699 84 19942 113145;113146 137169;137170 137170 60 2 YAEYSFTSLPVPESNLR Unmodified 1971.9578 0.95780742 1945 Q5UIP0;Q5UIP0-2 RIF1 Telomere-associated protein RIF1 yes no 0 0 0 0 By MS/MS 6 0 1 1 71.597 71.541 3 0.0095985 22299 20211116_3434_TMUAki_TMT10x_P_F6 51.235 39.796 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21700 1945 19943 113147 137171 137171 1 YAFGQETNVPLNNFSADQVTR Unmodified 2370.124 0.1240379 232 O43678 NDUFA2 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 yes yes 0 0 0 0 By MS/MS 6 0 1 1 66.42 66.364 3 7.8564E-06 20585 20211116_3445_TMUAki_TMT10x_S_F6 80.98 70.641 2711500 4838400 40616 4153500 3272900 3338800 3153200 3513600 3206200 3522000 3535900 2525000 4512200 270520 4273400 3137700 3455600 3206300 3563800 3271100 3439400 3400700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2711500 4838400 40616 4153500 3272900 3338800 3153200 3513600 3206200 3522000 3535900 2525000 4512200 270520 4273400 3137700 3455600 3206300 3563800 3271100 3439400 3400700 2 2 2 2 2 2 2 2 2 2 2 651040000 0 651040000 21701 232 19944 113148 137172;137173 137173 2 YAFPVSNNLPLFAFEYK Unmodified 2019.0142 0.014200086 1654 Q13614;Q13614-2 MTMR2 Myotubularin-related protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 80.715 80.665 3 3.2598E-05 28537 20211116_3430_TMUAki_TMT10x_P_F3 82.259 63.471 5048300 7744800 57270 7204300 5201800 7156700 5439700 3729600 3839300 4213300 5432100 4700900 7224700 470670 7387100 4996900 7216700 5455700 3979500 4032400 4095000 5190800 3 3 2 3 3 3 3 3 3 3 3 3539500 5450200 37541 4874300 3210500 5639000 3589700 2694500 2738000 3061600 3816100 3295900 5083500 320440 5024700 3090000 5631300 3595000 2899200 2861000 2975000 3647900 2 2 1 2 2 2 2 2 2 2 2 1508800 2294600 19728 2330100 1991300 1517600 1850000 1035100 1101300 1151700 1615900 1405000 2141200 150230 2362400 1907000 1585300 1860700 1080300 1171400 1120000 1542900 1 1 1 1 1 1 1 1 1 1 1 611250000 306490000 304760000 21702 1654 19945 113149;113150 137174;137175;137176 137174 3 YAFSGVAFTGAK Unmodified 1217.6081 0.60807369 790 P23919;P23919-2 DTYMK Thymidylate kinase yes no 0 0 0 0 By MS/MS By MS/MS 2.25 0.433 3 1 2 2 62.135 61.856 2;3 1.9551E-12 19222 20211116_3440_TMUAki_TMT10x_S_F2 143.24 109.86 9402800 14957000 0 14959000 13269000 18978000 11288000 9203800 9850200 10310000 11782000 8754300 13957000 755880 15321000 12668000 18866000 11509000 9884200 10152000 10024000 11306000 2 2 0 2 2 2 2 2 2 2 2 9402800 14957000 0 14959000 13269000 18978000 11288000 9203800 9850200 10310000 11782000 8754300 13957000 755880 15321000 12668000 18866000 11509000 9884200 10152000 10024000 11306000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 689840000 689840000 0 21703 790 19946 113151;113152;113153;113154 137177;137178;137179;137180 137179 4 YAGEPVPFIEPPESFEFYAQQLR Unmodified 2713.3064 0.30641894 1018 P42704 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 1.11 2 1 2 1 3 3 80.295 80.298 3 4.7258E-28 26234 20211116_3445_TMUAki_TMT10x_S_F6 170.53 149.52 6911300 8815500 0 10366000 6717600 7192500 7806400 4890900 5000600 4949300 6902700 6434600 8231600 199360 10419000 6464300 7471300 7774500 5090600 5277500 4831300 6599900 5 5 0 5 5 5 5 5 5 5 5 2448200 2272500 0 3663300 1676900 2657900 2178800 1560500 1456800 1616200 2239100 2279500 2125700 0 3623900 1620500 2745000 2161400 1643700 1541400 1576200 2135800 1 1 0 1 1 1 1 1 1 1 1 4463100 6543000 0 6703200 5040700 4534700 5627600 3330400 3543900 3333100 4663600 4155100 6105900 199360 6794600 4843800 4726300 5613100 3446900 3736200 3255100 4464100 4 4 0 4 4 4 4 4 4 4 4 4984600000 1861000000 3123500000 21704 1018 19947 113155;113156;113157;113158;113159;113160 137181;137182;137183;137184;137185;137186 137184 6 YAGGNPVCVRPTPK Unmodified 1514.7664 0.76638202 1747 Q15004 KIAA0101 PCNA-associated factor yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 36.204 36.175 3 1.4905E-09 8416 20211116_3428_TMUAki_TMT10x_P_F1 134.88 118.22 1163800 1923200 7393.4 2086000 1284000 1054000 875110 617090 656630 508250 1062400 1083700 1795200 104120 2101100 1221300 1127600 902280 646200 691960 500870 1012300 2 2 1 2 2 2 2 2 2 2 2 660600 1006600 7393.4 1151800 864450 726430 424000 329720 350760 258830 545650 615140 939830 64514 1158400 818250 757360 450840 353140 366960 255710 520340 1 1 1 1 1 1 1 1 1 1 1 503230 916580 0 934150 419560 327570 451110 287370 305870 249420 516710 468550 855340 39609 942680 403030 370220 451430 293070 325000 245160 491930 1 1 0 1 1 1 1 1 1 1 1 61717000 30531000 31187000 21705 1747 19948 113161;113162 137187;137188 137187 2 YAGLQGLMSVLAEIRPK Oxidation (M) 1861.0132 0.013154229 933 P35573;P35573-2;P35573-3 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes no 0 0 1 1 By MS/MS By matching 4 0 2 1 1 78.169 78.153 3 2.7549E-05 25923 20211116_3431_TMUAki_TMT10x_P_F4 87.251 67.145 3200400 5919600 203610 5188700 3321700 7068900 4224000 3728000 4111900 5209800 4552900 2981400 5520900 456790 5373100 3220000 7010300 4233900 4003300 4203700 5027200 4378400 1 1 1 1 1 1 1 1 1 1 1 3200400 5919600 203610 5188700 3321700 7068900 4224000 3728000 4111900 5209800 4552900 2981400 5520900 456790 5373100 3220000 7010300 4233900 4003300 4203700 5027200 4378400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1192500000 594560000 597900000 21706 933 19949 113163;113164 137189 137189 1169 1 YAGLSTCFR Unmodified 1073.4964 0.49641475 1107 P49591 SARS Serine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 By MS/MS 8 0 1 1 46.22 46.349 2 7.7885E-05 12665 20211116_3436_TMUAki_TMT10x_P_F8 142.08 111.44 8024000 11955000 168960 12743000 19331000 20894000 11218000 13079000 13008000 11190000 12014000 7472400 11158000 981060 13067000 18342000 20607000 11859000 13635000 13120000 11007000 11620000 2 2 2 2 2 2 2 2 2 2 2 8024000 11955000 168960 12743000 19331000 20894000 11218000 13079000 13008000 11190000 12014000 7472400 11158000 981060 13067000 18342000 20607000 11859000 13635000 13120000 11007000 11620000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 121780000 121780000 0 21707 1107 19950 113165 137190;137191 137191 2 YAGPEDDAAITLAFSK Unmodified 1667.8043 0.80426689 1500 Q02880;Q02880-2 TOP2B DNA topoisomerase 2-beta yes no 0 0 0 0 By MS/MS By MS/MS 3.78 0.916 1 2 4 2 4 5 74.49 74.428 2;3 3.686E-43 24819 20211116_3442_TMUAki_TMT10x_S_F4 235.73 217.1 54834000 92299000 1780400 96356000 60955000 74801000 66859000 55225000 52985000 59855000 69572000 51069000 86140000 6285500 97690000 58702000 77092000 67080000 57276000 55099000 58267000 66600000 13 13 12 13 13 13 13 13 13 13 13 16556000 27656000 434290 28433000 18607000 31694000 21262000 17042000 16874000 18112000 20389000 15418000 25809000 1800400 29000000 17934000 31758000 21293000 18098000 17483000 17645000 19560000 4 4 3 4 4 4 4 4 4 4 4 38279000 64643000 1346100 67923000 42347000 43107000 45597000 38184000 36112000 41743000 49183000 35651000 60331000 4485100 68690000 40768000 45334000 45787000 39177000 37616000 40622000 47040000 9 9 9 9 9 9 9 9 9 9 9 3822500000 2038100000 1784400000 21708 1500 19951 113166;113167;113168;113169;113170;113171;113172;113173;113174 137192;137193;137194;137195;137196;137197;137198;137199;137200;137201;137202;137203;137204 137202 13 YAGSALQYEDVSTAVQNLQK Unmodified 2184.0699 0.069877064 2882 Q9NP79;Q9NP79-2 VTA1 Vacuolar protein sorting-associated protein VTA1 homolog yes no 0 0 0 0 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 70.444 70.588 3 3.8852E-18 23856 20211116_3435_TMUAki_TMT10x_P_F7 142.94 126.51 54933000 108230000 142390 71530000 84314000 121360000 75488000 100140000 92679000 101790000 89220000 51144000 100850000 3322000 76310000 80590000 120090000 77565000 102930000 93410000 99346000 86175000 8 8 1 8 8 8 8 8 8 8 8 24496000 45788000 142390 32382000 34523000 72068000 40504000 45078000 39835000 45240000 37959000 22806000 42675000 1987200 34575000 33241000 70363000 40751000 47199000 40488000 44177000 36676000 5 5 1 5 5 5 5 5 5 5 5 30437000 62438000 0 39148000 49791000 49297000 34985000 55058000 52844000 56551000 51261000 28338000 58174000 1334800 41734000 47349000 49724000 36814000 55733000 52922000 55169000 49499000 3 3 0 3 3 3 3 3 3 3 3 5571200000 2599800000 2971400000 21709 2882 19952 113175;113176;113177;113178;113179;113180 137205;137206;137207;137208;137209;137210;137211;137212;137213;137214 137208 10 YAHGLISDYIPK Unmodified 1375.7136 0.71360139 1942 Q5TBB1;Q5TBB1-2 RNASEH2B Ribonuclease H2 subunit B yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 54.363 54.754 3 2.7098E-06 17176 20211116_3435_TMUAki_TMT10x_P_F7 113.63 92.378 5468400 9800100 125840 10242000 9812700 12073000 7568800 9120600 8108700 7681500 7647000 5092500 9146200 631480 10445000 9360000 12120000 7811400 9379100 8209200 7561400 7391100 2 2 2 2 2 2 2 2 2 2 2 3369400 6067400 103480 6133900 7171800 9913900 5453700 5870500 4698500 4604200 4319700 3138000 5661800 429050 6309400 6839700 9775600 5598400 6134800 4799500 4548900 4178800 1 1 1 1 1 1 1 1 1 1 1 2098900 3732700 22353 4108600 2640900 2158800 2115000 3250100 3410200 3077300 3327300 1954500 3484400 202440 4135800 2520300 2344000 2213000 3244200 3409700 3012500 3212300 1 1 1 1 1 1 1 1 1 1 1 1304700000 534870000 769790000 21710 1942 19953 113181;113182;113183 137215;137216 137215 2 YAHLSARPADEIAVDR Unmodified 1782.9013 0.90129559 1859 Q16658 FSCN1 Fascin yes yes 0 0 0 1 By MS/MS 5 0 1 1 35.197 35.372 4 0.043127 7683 20211116_3444_TMUAki_TMT10x_S_F5 41.524 20.684 769360 1245600 0 1364500 849380 777230 746770 1062000 1127500 985210 1161500 716250 1162700 52241 1374800 811020 834410 774630 1063100 1131600 965370 1119400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 769360 1245600 0 1364500 849380 777230 746770 1062000 1127500 985210 1161500 716250 1162700 52241 1374800 811020 834410 774630 1063100 1131600 965370 1119400 1 1 0 1 1 1 1 1 1 1 1 31648000 0 31648000 21711 1859 19954 113184 137217 137217 1 YAHVVLR Unmodified 856.49192 0.49192172 1345 P62269 RPS18 40S ribosomal protein S18 yes yes 0 0 0 0 By MS/MS By MS/MS 5 2.61 2 1 1 2 1 3 6 4 30.37 30.519 2;3 0.00064871 6558 20211116_3428_TMUAki_TMT10x_P_F1 133.99 71.274 5101400 7781400 257230 8143800 5807000 6135600 5832800 4893400 4828200 5202800 6443400 4751800 7262200 671210 8252400 5584100 6346500 5884000 5047200 5013100 5068600 6165700 6 6 5 6 6 6 6 6 6 6 6 2045300 2635700 22995 2617300 2378200 2833700 1905400 1669500 1634900 2024900 2520300 1904500 2459300 194310 2674600 2269800 2847300 1949100 1766900 1706500 1963000 2403800 3 3 2 3 3 3 3 3 3 3 3 3056100 5145700 234240 5526500 3428700 3301800 3927400 3223900 3193300 3177900 3923100 2847300 4802900 476890 5577800 3314400 3499100 3934900 3280400 3306700 3105600 3761800 3 3 3 3 3 3 3 3 3 3 3 2081400000 1067600000 1013700000 21712 1345 19955 113185;113186;113187;113188;113189;113190;113191;113192;113193;113194 137218;137219;137220;137221;137222;137223;137224;137225;137226 137218 9 YAHVVLRK Unmodified 984.58688 0.58688473 1345 P62269 RPS18 40S ribosomal protein S18 yes yes 0 0 0 1 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 32.538 32.301 3;4 0.0024268 9897 20211116_3441_TMUAki_TMT10x_S_F3 94.006 74.903 2534900 3624000 16955 3764400 2901000 3386000 2479300 2526700 2511400 2549300 2863800 2360100 3382100 203980 3824700 2770300 3453500 2537900 2613000 2566100 2488800 2751700 3 3 1 3 3 3 3 3 3 3 3 1380300 1663000 0 1741900 1621000 2096800 1293000 1430200 1262700 1372200 1437400 1285000 1552100 93618 1776700 1544500 2099200 1327800 1486000 1292100 1342600 1381200 1 1 0 1 1 1 1 1 1 1 1 1154500 1961000 16955 2022500 1280000 1289200 1186300 1096500 1248700 1177000 1426400 1075100 1830000 110360 2048000 1225800 1354200 1210100 1127000 1273900 1146200 1370500 2 2 1 2 2 2 2 2 2 2 2 138770000 77776000 60996000 21713 1345 19956 113195;113196;113197 137227;137228;137229 137228 3 YAIAVNDLGTEYVHR Unmodified 1719.858 0.8580338 397 O94925-3;O94925 GLS Glutaminase kidney isoform, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 54.07 54.191 3 2.0763E-20 16338 20211116_3433_TMUAki_TMT10x_P_F5 154.1 133.25 5994300 9684600 32417 11957000 7267500 7222600 6826300 5618200 5017200 5207700 7335600 5581400 9045200 533550 11967000 6958500 7613900 6891300 5780900 5265600 5103100 7004600 2 2 1 2 2 2 2 2 2 2 2 3014400 4401400 32417 5807800 4270700 4656000 3860800 2657500 2402200 2589800 3664300 2807000 4112200 297720 5808400 4086600 4769400 3892400 2800800 2552400 2532100 3495800 1 1 1 1 1 1 1 1 1 1 1 2979900 5283200 0 6149500 2996800 2566600 2965500 2960800 2615000 2618000 3671200 2774500 4933000 235820 6158700 2871900 2844500 2998800 2980100 2713100 2571000 3508800 1 1 0 1 1 1 1 1 1 1 1 1391900000 905310000 486540000 21714 397 19957 113198;113199;113200;113201;113202 137230;137231;137232;137233 137231 4 YAICSALAASALPALVMSK Oxidation (M) 1952.0111 0.011105318 953 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 1 0 By MS/MS By MS/MS 4.89 0.809 3 5 21 7 22 14 74.932 74.941 2;3;4 3.972E-17 26679 20211116_3442_TMUAki_TMT10x_S_F4 148.18 130.82 109970000 196170000 393750 167190000 127850000 203440000 134300000 134140000 108950000 135180000 142380000 102390000 182940000 7786200 173150000 122700000 203460000 135110000 139910000 113130000 131980000 136310000 30 30 13 30 30 30 30 30 30 30 30 70065000 127200000 285330 109770000 73692000 154990000 85106000 87367000 69829000 86856000 91279000 65235000 118620000 4623400 113890000 70926000 153580000 85257000 92226000 72468000 84849000 87390000 22 22 10 22 22 22 22 22 22 22 22 39907000 68975000 108420 57421000 54154000 48454000 49197000 46775000 39122000 48328000 51101000 37154000 64318000 3162800 59261000 51779000 49877000 49850000 47689000 40666000 47135000 48924000 8 8 3 8 8 8 8 8 8 8 8 57470000000 28624000000 28846000000 21715 953 19958 113203;113204;113205;113206;113207;113208;113209;113210;113211;113212;113213;113214;113215;113216;113217;113218;113219;113220;113221;113222;113223;113224;113225;113226;113227;113228;113229;113230;113231;113232;113233;113234;113235;113236;113237;113238 137234;137235;137236;137237;137238;137239;137240;137241;137242;137243;137244;137245;137246;137247;137248;137249;137250;137251;137252;137253;137254;137255;137256;137257;137258;137259;137260;137261;137262;137263;137264;137265;137266;137267;137268;137269;137270;137271;137272;137273;137274;137275 137266 1210 42 YAICSALAASALPALVMSK Unmodified 1936.0162 0.016190696 953 P36578 RPL4 60S ribosomal protein L4 yes yes 0 0 0 0 By MS/MS By MS/MS 5.47 1.14 1 3 5 6 4 13 6 70.423 70.435 2;3 2.8011E-63 26240 20211116_3445_TMUAki_TMT10x_S_F6 263.59 232.4 205070000 385990000 6100600 401120000 317860000 292460000 250630000 189080000 113110000 143940000 264020000 190980000 360230000 24002000 406510000 303440000 302320000 253490000 196110000 126450000 142440000 250010000 22 22 19 22 22 22 22 22 22 22 22 93252000 155360000 2600700 166000000 129930000 188260000 125400000 91885000 53286000 67605000 114100000 86845000 145000000 10553000 168930000 124620000 188240000 125210000 97559000 59523000 67027000 108180000 14 14 12 14 14 14 14 14 14 14 14 111820000 230630000 3499900 235120000 187930000 104210000 125230000 97194000 59827000 76333000 149920000 104140000 215220000 13450000 237580000 178820000 114080000 128280000 98550000 66923000 75410000 141830000 8 8 7 8 8 8 8 8 8 8 8 38797000000 17677000000 21120000000 21716 953 19958 113239;113240;113241;113242;113243;113244;113245;113246;113247;113248;113249;113250;113251;113252;113253;113254;113255;113256;113257 137276;137277;137278;137279;137280;137281;137282;137283;137284;137285;137286;137287;137288;137289;137290;137291;137292;137293;137294;137295;137296;137297;137298 137296 23 YAILNEPFKGEMNR Oxidation (M) 1696.8243 0.82429083 1735 Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 1 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 51.142 51.493 3 0.0055866 14437 20211116_3445_TMUAki_TMT10x_S_F6 61.409 45.52 34022000 58099000 598820 61908000 53403000 69841000 41277000 55722000 63207000 53218000 52344000 31682000 54227000 3587700 63006000 50932000 70342000 43182000 57292000 62958000 52078000 50831000 6 6 4 6 6 6 6 6 6 6 6 20795000 34110000 387740 36518000 42075000 56885000 30447000 32770000 37196000 31849000 30847000 19365000 31837000 2356900 37389000 40073000 56152000 31701000 34508000 37320000 31144000 29953000 3 3 2 3 3 3 3 3 3 3 3 13227000 23989000 211070 25390000 11328000 12956000 10830000 22952000 26012000 21368000 21497000 12317000 22390000 1230800 25617000 10860000 14190000 11481000 22784000 25638000 20935000 20877000 3 3 2 3 3 3 3 3 3 3 3 4134000000 2105500000 2028500000 21717 1735 19959 113258;113259;113260;113261 137299;137300;137301;137302;137303;137304 137302 2335 6 YAILNEPFKGEMNR Unmodified 1680.8294 0.8293762 1735 Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 56.205 56.253 3 9.3057E-14 16649 20211116_3436_TMUAki_TMT10x_P_F8 143.46 123.71 15602000 25238000 129790 28613000 19617000 21733000 17202000 12044000 9846800 12557000 18125000 14528000 23563000 1453100 28848000 18755000 22347000 17347000 12750000 10633000 12242000 17228000 3 3 2 3 3 3 3 3 3 3 3 9693400 15526000 83883 17285000 14666000 17490000 12090000 8091800 7021300 8341300 11407000 9026000 14494000 933850 17513000 14001000 17594000 12241000 8708900 7520400 8136300 10869000 2 2 1 2 2 2 2 2 2 2 2 5909000 9712200 45908 11327000 4950900 4243300 5112100 3952400 2825500 4215300 6717500 5502200 9068500 519270 11336000 4754000 4753200 5106200 4041100 3112600 4106000 6359600 1 1 1 1 1 1 1 1 1 1 1 1323700000 760740000 562930000 21718 1735 19959 113262;113263;113264 137305;137306;137307;137308 137305 4 YAINPHLTEDQRFPQLR Unmodified 2097.0756 0.075571565 3176 Q9ULX3 NOB1 RNA-binding protein NOB1 yes yes 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 49.245 49.451 4 4.2591E-29 13940 20211116_3436_TMUAki_TMT10x_P_F8 183.31 145.54 4678100 8023000 7035.7 8449000 8369600 8809700 5177200 6550900 4858100 5226600 7175000 4355700 7487900 211660 8594700 7944300 8901700 5408500 6734900 5038500 5159100 6849700 3 3 1 3 3 3 3 3 3 3 3 3425600 5897800 0 5818400 6799300 7598000 4045500 4361300 3431700 3661500 5122600 3189400 5503000 96808 5967900 6449200 7557900 4228500 4576600 3578000 3604900 4889200 2 2 0 2 2 2 2 2 2 2 2 1252500 2125200 7035.7 2630700 1570300 1211600 1131800 2189700 1426400 1565100 2052400 1166300 1984900 114850 2626800 1495100 1343800 1180000 2158300 1460500 1554300 1960500 1 1 1 1 1 1 1 1 1 1 1 1143700000 911920000 231820000 21719 3176 19960 113265;113266;113267 137309;137310;137311 137310 3 YAIPTIDAEAYAIGKK Unmodified 1722.9192 0.91923707 2089 Q7Z6E9;Q7Z6E9-2;Q7Z6E9-4 RBBP6 E3 ubiquitin-protein ligase RBBP6 yes no 0 0 0 1 By MS/MS 8 0 1 1 67.002 67.141 3 0.0096831 21093 20211116_3436_TMUAki_TMT10x_P_F8 54.598 43.328 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21720 2089 19961 113268 137312 137312 1 YALPLVGHR Unmodified 1024.5818 0.58179936 654 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 3.09 2 2 2 3 3 42.974 42.923 3 1.161E-05 10699 20211116_3447_TMUAki_TMT10x_S_F8 122.13 106.5 2299600 3326500 26322 3915300 3939000 3500600 2853100 2236600 2804000 2658700 3063400 2141300 3106200 238080 3946500 3751200 3563300 2949300 2350500 2864000 2579300 2947100 5 5 4 5 5 5 5 5 5 5 5 1439900 2009300 22873 2324200 3187400 2505000 1809500 1491900 1921000 1743600 1902800 1340800 1876000 165170 2351500 3022900 2518000 1910900 1575500 1948800 1692600 1836100 3 3 3 3 3 3 3 3 3 3 3 859720 1317300 3448.9 1591100 751600 995540 1043700 744750 883030 915110 1160600 800510 1230200 72910 1594900 728220 1045300 1038400 774970 915210 886720 1111000 2 2 1 2 2 2 2 2 2 2 2 654480000 468840000 185640000 21721 654 19962 113269;113270;113271;113272;113273;113274 137313;137314;137315;137316;137317;137318 137318 6 YALSVGYR Unmodified 927.48142 0.48141661 669 P14550 AKR1A1 Alcohol dehydrogenase [NADP(+)] yes yes 0 0 0 0 By MS/MS By MS/MS 5 3.29 2 1 2 2 3 43.522 43.653 2 0.00044122 11533 20211116_3436_TMUAki_TMT10x_P_F8 149.99 102.08 7456600 12137000 133190 13506000 14380000 13023000 8800100 12999000 11536000 9559700 12010000 6943800 11330000 839290 13675000 13656000 13297000 9302800 13115000 11633000 9478200 11571000 5 5 5 5 5 5 5 5 5 5 5 3646100 5720700 81881 6590000 10074000 9723600 5523300 6670200 5769600 4752600 5918400 3395500 5341300 468620 6708300 9550000 9643900 5848100 6878500 5864100 4720700 5704700 2 2 2 2 2 2 2 2 2 2 2 3810500 6416500 51305 6916100 4306100 3299700 3276800 6329100 5766900 4807100 6091600 3548300 5989100 370670 6966200 4106200 3652700 3454700 6236600 5769400 4757500 5866300 3 3 3 3 3 3 3 3 3 3 3 435870000 238050000 197820000 21722 669 19963 113275;113276;113277;113278;113279 137319;137320;137321;137322;137323;137324 137320 6 YALTGDEVKK Unmodified 1122.5921 0.59208927 1362 P62701;Q8TD47 RPS4X;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2 no no 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 40.212 40.309 3 2.3516E-05 9805 20211116_3444_TMUAki_TMT10x_S_F5 100.55 74.04 4311000 7041300 30415 6911000 7797900 6734500 5281400 3758900 4042000 3526900 5143900 4014200 6569800 434600 7056900 7415600 6804700 5450400 3965100 4205400 3454100 4928000 3 3 3 3 3 3 3 3 3 3 3 2729800 4379600 16007 4226100 6327900 5478800 3492400 2495100 2738600 2338600 3141200 2541900 4086000 291630 4340900 5997100 5437100 3667400 2682700 2833300 2290500 3017700 1 1 1 1 1 1 1 1 1 1 1 1581200 2661800 14408 2684900 1470000 1255700 1789100 1263800 1303400 1188300 2002700 1472400 2483800 142960 2716000 1418400 1367500 1783000 1282300 1372100 1163700 1910300 2 2 2 2 2 2 2 2 2 2 2 376890000 289920000 86974000 21723 1362 19964 113280;113281;113282;113283 137325;137326;137327;137328;137329 137327 5 YALYDASFETK Unmodified 1306.6081 0.60813326 1282 P60981;P60981-2 DSTN Destrin yes no 0 0 0 0 By MS/MS By MS/MS 5.12 1.49 1 4 4 4 3 7 9 60.913 61.067 2;3 5.3663E-30 18362 20211116_3445_TMUAki_TMT10x_S_F6 270.19 243.09 148650000 252840000 574980 251690000 206640000 299400000 163980000 259440000 216320000 213590000 219340000 138400000 235920000 12815000 257560000 197040000 301160000 170190000 264430000 217880000 210490000 211490000 18 18 8 18 18 18 18 18 18 18 18 77230000 129200000 210290 125130000 132620000 234990000 104110000 144430000 119100000 118010000 114420000 71906000 120540000 6800600 129580000 126420000 230580000 107560000 150630000 120340000 116340000 110520000 9 9 4 9 9 9 9 9 9 9 9 71416000 123640000 364690 126560000 74021000 64403000 59875000 115010000 97218000 95577000 104920000 66496000 115380000 6014100 127980000 70622000 70581000 62630000 113800000 97542000 94146000 100970000 9 9 4 9 9 9 9 9 9 9 9 12982000000 6397800000 6583900000 21724 1282 19965 113284;113285;113286;113287;113288;113289;113290;113291;113292;113293;113294;113295;113296;113297;113298;113299 137330;137331;137332;137333;137334;137335;137336;137337;137338;137339;137340;137341;137342;137343;137344;137345;137346;137347;137348 137346 19 YALYDATYETK Unmodified 1336.6187 0.61869795 787;3229 P23528;Q9Y281;Q9Y281-3 CFL1;CFL2 Cofilin-1;Cofilin-2 no no 0 0 0 0 By MS/MS By MS/MS 4.15 1.65 2 1 4 4 4 4 1 12 8 54.94 55 2;3 1.2049E-37 15506 20211116_3444_TMUAki_TMT10x_S_F5 278.16 210.26 199970000 303730000 1761200 413570000 316820000 343690000 197010000 268970000 290830000 226430000 280210000 186190000 283820000 18795000 413110000 300810000 352760000 209010000 275970000 291380000 222900000 270630000 30 30 16 30 30 30 30 30 30 30 30 102800000 152340000 1027700 205060000 244060000 278280000 132760000 137430000 150130000 115540000 138790000 95719000 142340000 10981000 206570000 231250000 275810000 141020000 146180000 151570000 113740000 134230000 16 16 9 16 16 16 16 16 16 16 16 97170000 151390000 733510 208510000 72761000 65410000 64254000 131540000 140700000 110900000 141420000 90476000 141480000 7814200 206540000 69559000 76949000 67987000 129790000 139820000 109160000 136400000 14 14 7 14 14 14 14 14 14 14 14 39774000000 23668000000 16105000000 21725 787;3229 19966 113300;113301;113302;113303;113304;113305;113306;113307;113308;113309;113310;113311;113312;113313;113314;113315;113316;113317;113318;113319 137349;137350;137351;137352;137353;137354;137355;137356;137357;137358;137359;137360;137361;137362;137363;137364;137365;137366;137367;137368;137369;137370;137371;137372;137373;137374;137375;137376;137377;137378;137379;137380 137374 32 YAMAWGVVER Oxidation (M) 1196.5648 0.56482866 1446 P83111 LACTB Serine beta-lactamase-like protein LACTB, mitochondrial yes yes 0 0 1 0 By matching By MS/MS 5 0 2 1 1 50.882 51.073 3 0.04197 14000 20211116_3444_TMUAki_TMT10x_S_F5 43.282 16.609 869040 1438900 56960 1732800 779430 752790 949770 887170 869780 893430 1146700 809580 1343700 123880 1732300 755090 830360 952010 895420 898180 872310 1097600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 869040 1438900 56960 1732800 779430 752790 949770 887170 869780 893430 1146700 809580 1343700 123880 1732300 755090 830360 952010 895420 898180 872310 1097600 1 1 1 1 1 1 1 1 1 1 1 183380000 108530000 74842000 21726 1446 19967 113320;113321 137381 137381 1951 1 YAPLHLVPLIER Unmodified 1419.8238 0.82382054 2060 Q7L576;Q96F07;Q7L576-2;Q7L576-3;Q96F07-2 CYFIP1;CYFIP2 Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 5 3.29 2 1 2 3 2 61.824 61.803 3 3.7366E-09 18318 20211116_3447_TMUAki_TMT10x_S_F8 147.63 125.54 7309400 11456000 174480 11158000 8029600 10318000 8098100 7883000 7170500 7174200 8405500 6806800 10689000 751350 11391000 7709600 10508000 8181900 8116600 7379200 7035900 8070200 5 5 3 5 5 5 5 5 5 5 5 3091500 4772400 96958 4794400 3712300 6232100 3885000 3516400 3088400 3090800 3627200 2879200 4453200 355360 4911100 3569700 6199100 3907000 3699600 3195900 3036200 3482300 2 2 2 2 2 2 2 2 2 2 2 4217900 6683700 77526 6363400 4317300 4085900 4213100 4366600 4082100 4083400 4778300 3927600 6235400 395980 6480300 4139900 4309300 4274900 4417000 4183300 3999800 4587900 3 3 1 3 3 3 3 3 3 3 3 3817500000 2059100000 1758400000 21727 2060 19968 113322;113323;113324;113325;113326 137382;137383;137384;137385;137386;137387 137387 6 YAPSEAGLHEMDIR Oxidation (M) 1603.7301 0.73005609 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 1 0 By MS/MS By MS/MS 3.5 0.957 1 2 2 1 3 3 35.347 35.32 3 1.5312E-09 9658 20211116_3429_TMUAki_TMT10x_P_F2 131.96 92.925 2293400 3335000 68700 4388900 4428600 3941000 2690700 2459800 3003000 2305600 3126000 2135800 3115900 278240 4396300 4206400 4009100 2829900 2571100 3045800 2258100 3011700 6 6 5 6 6 6 6 6 6 6 6 1624600 2230900 45886 2957900 3834800 3406900 2035000 1617900 2034400 1582700 2073400 1513000 2084300 202580 2972900 3634100 3402800 2158300 1734200 2071100 1547200 1998900 3 3 2 3 3 3 3 3 3 3 3 668750 1104200 22814 1431100 593800 534060 655770 841950 968620 722860 1052600 622840 1031500 75656 1423400 572300 606320 671620 836930 974690 710890 1012800 3 3 3 3 3 3 3 3 3 3 3 331650000 188620000 143030000 21728 755 19969 113327;113328;113329;113330;113331;113332 137388;137389;137390;137391;137392;137393 137388 874 6 YAPSEAGLHEMDIR Unmodified 1587.7351 0.73514147 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 43.901 43.757 3 5.4867E-19 14617 20211116_3441_TMUAki_TMT10x_S_F3 162.41 111.56 2282600 3580800 34494 4440900 3699100 3324600 2455000 2123000 2169600 1972200 2882300 2125600 3344500 241230 4453000 3517700 3428700 2546400 2214700 2245000 1932300 2758300 3 3 3 3 3 3 3 3 3 3 3 1487100 2265300 26777 2844900 2992700 2785800 1904200 1339000 1369000 1288400 1836900 1384800 2116000 169330 2860500 2843800 2809100 1971800 1432900 1432700 1260400 1757500 2 2 2 2 2 2 2 2 2 2 2 795550 1315500 7716.8 1596000 706430 538780 550810 784000 800620 683800 1045400 740800 1228500 71900 1592500 673910 619600 574580 781750 812250 671960 1000900 1 1 1 1 1 1 1 1 1 1 1 116680000 72116000 44560000 21729 755 19969 113333;113334;113335;113336 137394;137395;137396;137397;137398 137397 5 YAPSGFYIASGDVSGK Unmodified 1617.7675 0.76748745 307 O75083 WDR1 WD repeat-containing protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.7 0.9 1 3 4 2 7 3 61.671 62.104 2;3 1.5331E-46 20192 20211116_3435_TMUAki_TMT10x_P_F7 243.7 214.61 37893000 67214000 315700 70590000 50436000 62540000 44310000 46356000 42243000 45300000 51775000 35284000 62731000 3525500 71655000 48220000 63845000 45202000 47917000 43404000 44286000 49650000 7 7 4 7 7 7 7 7 7 7 7 20983000 36169000 172710 36799000 32579000 46637000 29189000 26122000 23034000 24928000 27559000 19538000 33752000 2047800 37644000 31162000 46443000 29595000 27558000 23863000 24395000 26445000 4 4 3 4 4 4 4 4 4 4 4 16911000 31045000 142990 33791000 17857000 15904000 15121000 20234000 19210000 20372000 24216000 15746000 28979000 1477700 34011000 17058000 17402000 15607000 20359000 19541000 19891000 23205000 3 3 1 3 3 3 3 3 3 3 3 5666300000 3452400000 2213900000 21730 307 19970 113337;113338;113339;113340;113341;113342;113343;113344;113345;113346 137399;137400;137401;137402;137403;137404;137405;137406;137407;137408;137409 137402 11 YAPTEAQLNAVDALIDSMSLAK Unmodified 2320.1621 0.16206289 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 5.3 2.15 2 1 1 2 3 4 4 3 9 11 82.095 82.098 3;4 3.0185E-83 27242 20211116_3436_TMUAki_TMT10x_P_F8 282.72 267.46 58403000 90686000 233430 91604000 68787000 63848000 74844000 29205000 22576000 35256000 61471000 54376000 84623000 4638800 92971000 66089000 65977000 73983000 31623000 26635000 34184000 58095000 28 28 13 28 28 28 28 28 28 28 28 26774000 40560000 64692 41359000 25906000 38395000 33273000 14806000 11693000 18162000 27975000 24928000 37850000 2046600 42092000 25015000 38767000 32697000 16345000 13417000 17599000 26483000 13 13 5 13 13 13 13 13 13 13 13 31629000 50126000 168740 50244000 42881000 25452000 41571000 14399000 10884000 17094000 33496000 29449000 46774000 2592200 50879000 41074000 27210000 41286000 15278000 13217000 16584000 31612000 15 15 8 15 15 15 15 15 15 15 15 11043000000 5085700000 5957500000 21731 648 19971 113347;113348;113349;113350;113351;113352;113353;113354;113355;113356;113357;113358;113359;113360;113361;113362;113363;113364;113365;113366 137410;137411;137412;137413;137414;137415;137416;137417;137418;137419;137420;137421;137422;137423;137424;137425;137426;137427;137428;137429;137430;137431;137432;137433;137434;137435;137436;137437 137421 28 YAPTEAQLNAVDALIDSMSLAK Oxidation (M) 2336.157 0.15697751 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 1 0 By MS/MS By MS/MS 5.73 1.77 3 1 2 3 3 3 10 5 80.015 80.009 2;3 4.5755E-20 25537 20211116_3444_TMUAki_TMT10x_S_F5 155.53 139.59 58982000 98257000 482200 83651000 79301000 120430000 91508000 93739000 84456000 93236000 89008000 54920000 91630000 4774300 86919000 76357000 119820000 91964000 96639000 86389000 91079000 85722000 18 18 9 18 18 18 18 18 18 18 18 31788000 47002000 382070 39694000 35469000 79655000 47951000 47578000 45561000 46538000 46365000 29600000 43830000 2402000 41609000 34343000 77961000 47912000 49962000 46484000 45494000 44701000 10 10 5 10 10 10 10 10 10 10 10 27195000 51256000 100130 43956000 43832000 40780000 43557000 46160000 38894000 46698000 42643000 25320000 47800000 2372300 45311000 42013000 41861000 44052000 46677000 39905000 45585000 41020000 8 8 4 8 8 8 8 8 8 8 8 29725000000 15527000000 14198000000 21732 648 19971 113367;113368;113369;113370;113371;113372;113373;113374;113375;113376;113377;113378;113379;113380;113381 137438;137439;137440;137441;137442;137443;137444;137445;137446;137447;137448;137449;137450;137451;137452;137453;137454;137455;137456 137450 700 19 YAPTEAQLNAVDALIDSMSLAKK Unmodified 2448.257 0.25702591 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 1 By MS/MS 1 0 1 1 79.942 79.942 4 0.0096132 26396 20211116_3428_TMUAki_TMT10x_P_F1 43.38 19.285 2579900 3876900 6250.4 3826900 2750400 4455700 2661000 1890900 1746400 2165300 2784900 2402200 3617400 222100 3917000 2635300 4442700 2675500 2060200 1853500 2103400 2654400 1 1 1 1 1 1 1 1 1 1 1 2579900 3876900 6250.4 3826900 2750400 4455700 2661000 1890900 1746400 2165300 2784900 2402200 3617400 222100 3917000 2635300 4442700 2675500 2060200 1853500 2103400 2654400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1776800000 1776800000 0 21733 648 19972 113382 137457 137457 1 YAQAGFEGFK Unmodified 1116.524 0.52400971 352 O75643;O75643-2 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 0 0 0 0 By MS/MS By MS/MS 6.25 0.433 3 1 2 2 53.754 54.056 2;3 7.2732E-09 15086 20211116_3434_TMUAki_TMT10x_P_F6 177.06 152.29 17376000 27129000 74883 34250000 32144000 32780000 19741000 29377000 29606000 23355000 28048000 16179000 25341000 1660900 34415000 30511000 33409000 20978000 29860000 29632000 23058000 27105000 5 5 3 5 5 5 5 5 5 5 5 9927900 15211000 32065 18797000 26451000 27531000 14819000 17154000 16864000 13541000 15454000 9243900 14207000 1063400 19053000 25071000 27275000 15703000 17857000 17017000 13374000 14951000 3 3 2 3 3 3 3 3 3 3 3 7448500 11918000 42818 15453000 5693400 5249700 4922500 12223000 12742000 9813900 12594000 6935300 11134000 597510 15362000 5440000 6134100 5275500 12003000 12615000 9684000 12154000 2 2 1 2 2 2 2 2 2 2 2 924990000 680520000 244460000 21734 352 19973 113383;113384;113385;113386 137458;137459;137460;137461;137462;137463 137458 6 YASFQVENDQER Unmodified 1484.6532 0.65318598 1214 P53992 SEC24C Protein transport protein Sec24C yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 4 2 2 41.069 40.942 2;3 2.9175E-48 13570 20211116_3441_TMUAki_TMT10x_S_F3 302.38 266 909440 1395500 2499.8 1736500 1546100 1330800 950270 974730 1182400 924160 1275700 846730 1303400 78727 1741400 1467100 1372700 1002200 1007500 1196000 904670 1227700 3 3 1 3 3 3 3 3 3 3 3 526210 807920 2499.8 954990 1212200 1014200 635490 521450 603780 493620 682460 489950 754420 52996 964750 1147800 1018500 673780 554210 618420 483240 655910 2 2 1 2 2 2 2 2 2 2 2 383230 587550 0 781500 333920 316570 314780 453280 578610 430540 593200 356780 548970 25731 776600 319340 354250 328460 453290 577610 421430 571790 1 1 0 1 1 1 1 1 1 1 1 110370000 34090000 76277000 21735 1214 19974 113387;113388;113389;113390 137464;137465;137466 137466 3 YASICQQNGIVPIVEPEILPDGDHDLK Unmodified 3019.4961 0.49608698 482;590 P04075;P04075-2;P09972 ALDOA;ALDOC Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase C no no 0 0 0 0 By MS/MS By MS/MS 4.43 0.904 1 3 2 1 3 4 76.598 76.563 3;4 4.1074E-18 24402 20211116_3444_TMUAki_TMT10x_S_F5 134.76 120.35 16318000 25703000 15631 24931000 15665000 21229000 14940000 12851000 11669000 13675000 16777000 15192000 23981000 1208800 25433000 14993000 21667000 15091000 13513000 12196000 13321000 16026000 4 4 1 4 4 4 4 4 4 4 4 10076000 14827000 0 15315000 9124500 15534000 9080000 8103800 7248300 8520000 10232000 9381400 13837000 768790 15593000 8744400 15645000 9155800 8626800 7560000 8304000 9778000 2 2 0 2 2 2 2 2 2 2 2 6241500 10876000 15631 9615800 6540500 5694800 5859800 4746800 4421000 5154600 6545200 5810800 10143000 440030 9840000 6248900 6022000 5934900 4886200 4636000 5017400 6248100 2 2 1 2 2 2 2 2 2 2 2 8974900000 5310100000 3664800000 21736 482;590 19975 113391;113392;113393;113394;113395;113396;113397 137467;137468;137469;137470 137470 4 YASICQQNGIVPIVEPEILPDGDHDLKR Unmodified 3175.5972 0.59719801 482;590 P04075;P04075-2;P09972 ALDOA;ALDOC Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase C no no 0 0 0 1 By MS/MS By MS/MS 5.38 1.55 1 3 3 5 8 4 2 14 12 69.217 69.232 3;4;5 3.0837E-42 22071 20211116_3431_TMUAki_TMT10x_P_F4 187.72 178.39 111210000 178140000 1402900 165700000 110500000 150720000 115880000 103960000 93186000 110100000 123250000 103560000 166180000 7221300 169700000 106150000 153410000 116560000 108240000 96861000 107280000 117960000 41 41 24 41 41 41 41 41 41 41 41 57235000 87857000 796200 81239000 51458000 93603000 63608000 52932000 47094000 55512000 63138000 53297000 81956000 3592500 83530000 49688000 93680000 63374000 55947000 49202000 54110000 60410000 22 22 13 22 22 22 22 22 22 22 22 53979000 90283000 606700 84464000 59042000 57113000 52275000 51029000 46092000 54587000 60110000 50263000 84222000 3628800 86169000 56462000 59733000 53187000 52296000 47659000 53166000 57552000 19 19 11 19 19 19 19 19 19 19 19 93423000000 47274000000 46149000000 21737 482;590 19976 113398;113399;113400;113401;113402;113403;113404;113405;113406;113407;113408;113409;113410;113411;113412;113413;113414;113415;113416;113417;113418;113419;113420;113421;113422;113423 137471;137472;137473;137474;137475;137476;137477;137478;137479;137480;137481;137482;137483;137484;137485;137486;137487;137488;137489;137490;137491;137492;137493;137494;137495;137496;137497;137498;137499;137500;137501;137502;137503;137504;137505;137506;137507;137508;137509;137510;137511 137475 41 YASPEMCFVFSDR Oxidation (M) 1623.6698 0.66976402 875 P30566;P30566-2 ADSL Adenylosuccinate lyase yes no 0 0 1 0 By MS/MS By MS/MS 4 0 2 1 1 56.783 56.928 2 0.00057064 17254 20211116_3431_TMUAki_TMT10x_P_F4 85.622 72.81 2320700 4020300 0 3945300 3082500 6042100 3195800 3153700 2840500 3263100 3370400 2160600 3751100 178620 4061500 2956900 5961000 3224700 3355500 2924000 3182400 3234900 1 1 0 1 1 1 1 1 1 1 1 2320700 4020300 0 3945300 3082500 6042100 3195800 3153700 2840500 3263100 3370400 2160600 3751100 178620 4061500 2956900 5961000 3224700 3355500 2924000 3182400 3234900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 645700000 645700000 0 21738 875 19977 113424;113425 137512;137513 137512 1049 2 YATLATVSR Unmodified 980.5291 0.52909508 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 38.817 39.256 2 0.00041245 10765 20211116_3446_TMUAki_TMT10x_S_F7 88.921 68.639 454740 810820 14204 814650 1194300 1221700 623150 767180 730190 568850 731830 423510 756590 61297 836890 1131600 1209200 665260 797010 738220 563740 705920 1 1 1 1 1 1 1 1 1 1 1 454740 810820 14204 814650 1194300 1221700 623150 767180 730190 568850 731830 423510 756590 61297 836890 1131600 1209200 665260 797010 738220 563740 705920 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29017000 29017000 0 21739 1695 19978 113426;113427;113428;113429 137514;137515;137516;137517 137516 4 YATTGKCELENCQPFVVETLHGK Unmodified 2680.2625 0.26252199 1524 Q06203 PPAT Amidophosphoribosyltransferase yes yes 0 0 0 1 By MS/MS 7 0 1 1 55.808 56.537 4 3.442E-11 17948 20211116_3435_TMUAki_TMT10x_P_F7 114.39 100.08 2170500 3550000 7897.8 3520000 3140500 4563600 3129600 2729500 2540000 2456500 2910300 2021000 3312400 200890 3608700 3011400 4543500 3156800 2859500 2622900 2410400 2796000 1 1 1 1 1 1 1 1 1 1 1 2170500 3550000 7897.8 3520000 3140500 4563600 3129600 2729500 2540000 2456500 2910300 2021000 3312400 200890 3608700 3011400 4543500 3156800 2859500 2622900 2410400 2796000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 809910000 809910000 0 21740 1524 19979 113430 137518 137518 1 YAVDDVPFSIPAASEIADLSNIINK Unmodified 2661.3538 0.35376306 2751 Q9GZL7 WDR12 Ribosome biogenesis protein WDR12 yes yes 0 0 0 0 By MS/MS By MS/MS 5.62 1.44 1 3 1 4 3 1 6 7 82.257 82.26 3;4 1.9392E-39 27020 20211116_3445_TMUAki_TMT10x_S_F6 198.61 187.92 9072700 14977000 67395 13655000 9199800 12993000 11022000 8014500 8963700 10459000 11380000 8447800 13970000 632160 14014000 8868200 13166000 11021000 8473000 9294800 10114000 10903000 11 11 6 11 11 11 11 11 11 11 11 4607200 7683200 21293 6841700 4267800 7973100 4960700 4156000 4955700 5612800 5662600 4289800 7166100 239450 7056000 4109800 7966900 4995500 4461700 5066900 5421700 5440600 6 6 2 6 6 6 6 6 6 6 6 4465600 7293800 46103 6813100 4932100 5020200 6060800 3858500 4008000 4846100 5717400 4158000 6804100 392710 6957600 4758500 5198700 6025200 4011300 4227900 4692300 5462500 5 5 4 5 5 5 5 5 5 5 5 2298800000 891830000 1406900000 21741 2751 19980 113431;113432;113433;113434;113435;113436;113437;113438;113439;113440;113441;113442;113443 137519;137520;137521;137522;137523;137524;137525;137526;137527;137528;137529 137527 11 YAVLYQPLFDK Unmodified 1355.7125 0.71253876 1240 P55209;P55209-2;P55209-3 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.32 2.3 5 13 7 2 3 4 23 11 51.669 51.612 2;3 9.4876E-19 24922 20211116_3428_TMUAki_TMT10x_P_F1 227.88 186.85 416910000 676810000 2100800 707120000 378910000 355180000 392020000 156210000 209200000 229890000 384790000 388180000 631650000 33965000 713980000 363650000 379070000 391300000 171070000 227050000 221490000 365760000 32 32 19 32 32 32 32 32 32 32 32 153750000 240340000 305840 243500000 134830000 182590000 143190000 57877000 79374000 86492000 134110000 143140000 224280000 11401000 247270000 129420000 186960000 142830000 65996000 85484000 83294000 127670000 21 21 12 21 21 21 21 21 21 21 21 263160000 436470000 1795000 463630000 244090000 172590000 248830000 98330000 129820000 143400000 250680000 245040000 407370000 22564000 466710000 234230000 192100000 248470000 105070000 141570000 138190000 238080000 11 11 7 11 11 11 11 11 11 11 11 43737000000 24519000000 19218000000 21742 1240 19981 113444;113445;113446;113447;113448;113449;113450;113451;113452;113453;113454;113455;113456;113457;113458;113459;113460;113461;113462;113463;113464;113465;113466;113467;113468;113469;113470;113471;113472;113473;113474;113475;113476;113477 137530;137531;137532;137533;137534;137535;137536;137537;137538;137539;137540;137541;137542;137543;137544;137545;137546;137547;137548;137549;137550;137551;137552;137553;137554;137555;137556;137557;137558;137559;137560;137561;137562;137563;137564;137565;137566 137531 37 YAVLYQPLFDKR Unmodified 1511.8136 0.81364979 1240 P55209;P55209-2 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 65.004 64.824 3 0.0024253 23238 20211116_3441_TMUAki_TMT10x_S_F3 71.632 46.779 15143000 26706000 443540 24296000 24156000 40189000 21817000 35412000 27824000 25683000 25284000 14103000 24910000 1795000 25194000 23130000 39855000 22438000 35954000 27954000 25484000 24470000 2 2 2 2 2 2 2 2 2 2 2 11171000 19745000 319600 17954000 18115000 34587000 17636000 23455000 18113000 16667000 16943000 10403000 18418000 1321200 18692000 17377000 33959000 17928000 24206000 18364000 16557000 16381000 1 1 1 1 1 1 1 1 1 1 1 3972000 6960400 123940 6341600 6041100 5602200 4181100 11957000 9711600 9016300 8341200 3699200 6492500 473790 6502100 5753300 5895600 4509500 11748000 9589300 8926900 8088800 1 1 1 1 1 1 1 1 1 1 1 1128700000 677840000 450830000 21743 1240 19982 113478;113479;113480 137567;137568;137569 137568 3 YAVPSAGLR Unmodified 932.50797 0.50796571 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 2 3 38.464 38.841 2 0.00010403 11166 20211116_3435_TMUAki_TMT10x_P_F7 139.88 88.091 4459000 7030200 47705 7933700 9667000 7434400 5522600 6077200 6154800 4909700 6652500 4151900 6563300 453310 8022400 9165700 7573900 5838100 6212400 6251400 4843100 6402100 6 6 2 6 6 6 6 6 6 6 6 1980100 3174600 39701 3663700 7281100 5462100 3032100 3160300 3173000 2444700 3161600 1843800 2964000 261280 3729900 6876200 5401700 3302100 3307900 3221500 2417100 3050200 2 2 1 2 2 2 2 2 2 2 2 2479000 3855600 8003.3 4270000 2385900 1972300 2490500 2916900 2981700 2464900 3490900 2308100 3599300 192030 4292500 2289500 2172200 2536000 2904500 3030000 2426000 3351800 4 4 1 4 4 4 4 4 4 4 4 169420000 107650000 61764000 21744 1433 19983 113481;113482;113483;113484;113485 137570;137571;137572;137573;137574;137575 137570 6 YAVTTGDHGIIR Unmodified 1301.6728 0.67279921 1207 P53621;P53621-2 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 35.493 35.547 3 2.7779E-20 7619 20211116_3444_TMUAki_TMT10x_S_F5 234.3 198.65 1675900 2477500 31045 2797800 3931000 3393300 2142500 2706700 2579500 2057500 2834900 1560700 2313000 199460 2840500 3726100 3404700 2280200 2767200 2614100 2036200 2726800 3 3 3 3 3 3 3 3 3 3 3 1328000 1961100 30364 2080700 3634600 3106700 1865000 2216900 2025300 1659500 2246300 1236700 1830300 170700 2129600 3442400 3081600 1989300 2282200 2061200 1643700 2160000 2 2 2 2 2 2 2 2 2 2 2 347900 516460 680.63 717030 296400 286640 277430 489830 554180 397960 588660 323940 482660 28757 710890 283770 323120 290970 485020 552890 392460 566790 1 1 1 1 1 1 1 1 1 1 1 228080000 189620000 38463000 21745 1207 19984 113486;113487;113488 137576;137577;137578 137578 3 YAWQGVALLPFVDER Unmodified 1762.9043 0.90425571 2772 Q9H0D6;Q9H0D6-2 XRN2 5'-3' exoribonuclease 2 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 2 4 3 3 80.065 80.074 2;3 2.0051E-14 25846 20211116_3447_TMUAki_TMT10x_S_F8 156.36 131.85 4266700 6871600 53966 6731400 4811800 5729100 5409500 2793200 2602100 3011800 4752500 3972800 6411400 367720 6862100 4629200 5832300 5368900 2994700 2846400 2932500 4518000 3 3 2 3 3 3 3 3 3 3 3 2711600 4410500 23717 4381700 2906700 4234900 3450500 1728600 1666300 1906100 2972500 2524600 4115400 205690 4469900 2799300 4267000 3416300 1889300 1819600 1854300 2827100 2 2 1 2 2 2 2 2 2 2 2 1555200 2461100 30249 2349700 1905100 1494200 1959000 1064600 935850 1105700 1779900 1448300 2296000 162030 2392200 1829900 1565300 1952600 1105300 1026800 1078200 1690900 1 1 1 1 1 1 1 1 1 1 1 2402700000 1532300000 870390000 21746 2772 19985 113489;113490;113491;113492;113493;113494 137579;137580;137581 137581 3 YAYYDTER Unmodified 1079.456 0.45598972 81 O00303 EIF3F Eukaryotic translation initiation factor 3 subunit F yes yes 0 0 0 0 By MS/MS 3 0 1 1 35.947 35.707 2 0.0043214 11316 20211116_3441_TMUAki_TMT10x_S_F3 98.458 71.328 378460 623320 5677.2 726750 424630 292060 403400 382780 447700 353860 604130 352430 582010 37314 727600 406970 326380 411670 383740 459070 346790 577940 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 378460 623320 5677.2 726750 424630 292060 403400 382780 447700 353860 604130 352430 582010 37314 727600 406970 326380 411670 383740 459070 346790 577940 1 1 1 1 1 1 1 1 1 1 1 13307000 0 13307000 21747 81 19986 113495 137582 137582 1 YCAQDAFFQVK Unmodified 1375.6231 0.62307182 1584 Q13011 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 61.954 62.43 2;3 5.7485E-13 20325 20211116_3435_TMUAki_TMT10x_P_F7 145.25 117.63 9003700 15149000 1648500 17364000 9024500 14705000 11317000 17411000 15993000 17771000 16467000 8395600 14144000 2283100 17518000 8810600 15205000 11504000 17576000 16082000 17341000 15871000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9003700 15149000 1648500 17364000 9024500 14705000 11317000 17411000 15993000 17771000 16467000 8395600 14144000 2283100 17518000 8810600 15205000 11504000 17576000 16082000 17341000 15871000 2 2 2 2 2 2 2 2 2 2 2 396930000 0 396930000 21748 1584 19987 113496;113497 137583;137584;137585 137583 3 YCESFREQQVDGDLLLR Unmodified 2127.0055 0.0055026685 2017 Q6SZW1;Q6SZW1-2 SARM1 Sterile alpha and TIR motif-containing protein 1 yes no 0 0 0 1 By MS/MS 4 0 1 1 56.434 56.387 3 0.000174 17459 20211116_3442_TMUAki_TMT10x_S_F4 74.618 70.227 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21749 2017 19988 113498 137586 137586 1 YCFGVEDTLK Unmodified 1230.5591 0.55907458 1360 P62495;P62495-2 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 59.821 59.826 2 2.1929E-12 18622 20211116_3433_TMUAki_TMT10x_P_F5 186.16 141.81 11558000 18680000 0 24702000 9106300 6881500 9357800 7218500 6853000 7517000 12084000 10761000 17453000 794770 24508000 8729500 8117200 9401300 7331200 7267000 7329200 11495000 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11558000 18680000 0 24702000 9106300 6881500 9357800 7218500 6853000 7517000 12084000 10761000 17453000 794770 24508000 8729500 8117200 9401300 7331200 7267000 7329200 11495000 2 2 0 2 2 2 2 2 2 2 2 1013100000 0 1013100000 21750 1360 19989 113499;113500;113501;113502;113503;113504 137587;137588;137589;137590;137591 137588 5 YCFPNYVGRPK Unmodified 1399.6707 0.67069072 1298;1005 P42025;P61163 ACTR1B;ACTR1A Beta-centractin;Alpha-centractin no no 0 0 0 1 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 46.624 46.513 3 8.6801E-15 13316 20211116_3442_TMUAki_TMT10x_S_F4 190.96 169.09 21861000 40012000 261420 46649000 35538000 34678000 22572000 32916000 28283000 28058000 34057000 20357000 37360000 2206800 46942000 33763000 36027000 23750000 33410000 28728000 27603000 32675000 4 4 3 4 4 4 4 4 4 4 4 9098400 16014000 64826 18147000 24736000 25477000 14966000 13792000 11608000 11468000 14393000 8471600 14950000 992920 18472000 23474000 25239000 15587000 14542000 12055000 11296000 13799000 2 2 1 2 2 2 2 2 2 2 2 12763000 23999000 196600 28502000 10802000 9201600 7606100 19124000 16675000 16590000 19664000 11885000 22410000 1213900 28470000 10289000 10787000 8163100 18868000 16673000 16307000 18876000 2 2 2 2 2 2 2 2 2 2 2 2569900000 1344700000 1225200000 21751 1005;1298 19990 113505;113506;113507;113508 137592;137593;137594;137595 137595 4 YCLPFLQPGR Unmodified 1249.6278 0.62776327 1010 P42285 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 68.312 68.083 2 2.7027E-08 24479 20211116_3441_TMUAki_TMT10x_S_F3 166.05 146.26 35710000 61493000 244680 57431000 43185000 52457000 41944000 38753000 32333000 37685000 46502000 33251000 57364000 3208200 58801000 41386000 53438000 42313000 40061000 33817000 36849000 44420000 8 8 5 8 8 8 8 8 8 8 8 18023000 29390000 110220 27491000 19673000 34414000 22436000 19629000 16375000 18151000 22514000 16781000 27417000 1552500 28283000 18935000 34299000 22425000 20659000 17142000 17788000 21528000 4 4 3 4 4 4 4 4 4 4 4 17687000 32103000 134470 29940000 23513000 18043000 19508000 19124000 15959000 19534000 23988000 16470000 29948000 1655700 30518000 22451000 19139000 19888000 19402000 16675000 19061000 22892000 4 4 2 4 4 4 4 4 4 4 4 2513500000 1448900000 1064600000 21752 1010 19991 113509;113510;113511;113512;113513 137596;137597;137598;137599;137600;137601;137602;137603 137600 8 YCNSLPDIPFDPK Unmodified 1564.7232 0.7231798 2207 Q8N7H5;Q8N7H5-3;Q8N7H5-2 PAF1 RNA polymerase II-associated factor 1 homolog yes no 0 0 0 0 By matching By MS/MS 6 0 2 1 1 70.285 70.214 3 0.00063296 22181 20211116_3445_TMUAki_TMT10x_S_F6 77.912 64.484 2639800 4615500 0 4268900 2762100 2721300 2731100 2401800 2375900 2775300 2747400 2457900 4305500 213040 4356300 2647100 2860500 2760900 2469300 2445800 2695100 2638900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2639800 4615500 0 4268900 2762100 2721300 2731100 2401800 2375900 2775300 2747400 2457900 4305500 213040 4356300 2647100 2860500 2760900 2469300 2445800 2695100 2638900 1 1 0 1 1 1 1 1 1 1 1 542520000 237760000 304760000 21753 2207 19992 113514;113515 137604 137604 1 YCPNSVLVIIDVKPK Unmodified 1743.9593 0.95932774 1162 P51665 PSMD7 26S proteasome non-ATPase regulatory subunit 7 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 71.26 71.062 3 2.3252E-07 22893 20211116_3440_TMUAki_TMT10x_S_F2 119.56 101.86 19292000 32174000 164100 28449000 24739000 27494000 23036000 21316000 18917000 21805000 24411000 17963000 30008000 1708200 29272000 23680000 27929000 23328000 21999000 19620000 21275000 23378000 4 4 3 4 4 4 4 4 4 4 4 6387900 9868800 0 8704100 7171200 12611000 8126900 6735500 5633400 6604100 7711300 5946800 9204300 420140 9020300 6892300 12474000 8116300 7140800 5913800 6455300 7374500 1 1 0 1 1 1 1 1 1 1 1 12904000 22305000 164100 19745000 17568000 14884000 14909000 14581000 13283000 15201000 16700000 12016000 20803000 1288100 20252000 16788000 15455000 15212000 14859000 13706000 14820000 16004000 3 3 3 3 3 3 3 3 3 3 3 955480000 550100000 405380000 21754 1162 19993 113516;113517 137605;137606;137607;137608 137608 4 YCTFNDDIQGTAAVALAGLLAAQK Unmodified 2510.2475 0.24752385 780 P23368;P23368-2 ME2 NAD-dependent malic enzyme, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 3.62 2.29 4 2 1 1 5 3 81.829 81.818 3;4 6.0436E-51 27204 20211116_3440_TMUAki_TMT10x_S_F2 218.72 204.41 10123000 16821000 86555 16287000 10766000 12666000 11909000 8201300 7035200 9174500 11765000 9425300 15694000 875270 16599000 10353000 13027000 11869000 8593000 7538200 8920200 11203000 6 6 4 6 6 6 6 6 6 6 6 4297500 6570600 6182.9 6445700 3826900 6594000 3971800 3518800 3013600 3926100 4642000 4001000 6130600 304420 6586700 3670100 6639300 3991600 3745100 3165500 3817700 4427600 3 3 2 3 3 3 3 3 3 3 3 5825100 10251000 80372 9841800 6938900 6072500 7937000 4682400 4021600 5248400 7123400 5424300 9563400 570850 10013000 6683200 6387500 7877400 4847900 4372700 5102500 6775600 3 3 2 3 3 3 3 3 3 3 3 2269000000 1268500000 1000500000 21755 780 19994 113518;113519;113520;113521;113522;113523;113524;113525 137609;137610;137611;137612;137613;137614 137612 6 YDAFGEDSSSAMGVENR Oxidation (M) 1849.7425 0.74247127 3254 Q9Y2X3 NOP58 Nucleolar protein 58 yes yes 0 0 1 0 By MS/MS By MS/MS 2.14 0.833 2 2 3 4 3 43.946 43.817 2;3 9.2098E-16 13097 20211116_3429_TMUAki_TMT10x_P_F2 153.22 148.75 2927000 4577900 40878 5850400 5612700 5674300 3629700 5184400 5594700 3698700 5007200 2725600 4276400 305420 5875900 5333500 5780500 3846300 5251400 5584800 3673600 4848400 6 6 3 6 6 6 6 6 6 6 6 1545900 2327100 19795 2801300 4367200 4586000 2650100 2697800 2930800 1865300 2591200 1439500 2173200 179390 2851000 4145000 4519400 2786600 2813300 2957300 1856100 2510100 3 3 1 3 3 3 3 3 3 3 3 1381100 2250800 21084 3049100 1245500 1088400 979610 2486600 2663900 1833400 2416000 1286000 2103200 126030 3024900 1188400 1261100 1059700 2438100 2627500 1817500 2338300 3 3 2 3 3 3 3 3 3 3 3 884910000 659700000 225210000 21756 3254 19995 113526;113527;113528;113529;113530;113531;113532 137615;137616;137617;137618;137619;137620;137621 137616 3233 7 YDDMAAAMK Oxidation (M) 1030.41 0.4099675 895;1331 P31946;P31946-2;P61981 YWHAB;YWHAG 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed no no 0 0 1 0 By MS/MS 4 0 1 1 37.878 38.036 2 0.083609 10081 20211116_3442_TMUAki_TMT10x_S_F4 54.157 25.989 365380 608150 6575.2 589800 379840 287240 451850 214830 221360 234080 430130 340250 567400 36623 598470 366420 309660 447440 222660 242690 227830 408470 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 365380 608150 6575.2 589800 379840 287240 451850 214830 221360 234080 430130 340250 567400 36623 598470 366420 309660 447440 222660 242690 227830 408470 1 1 1 1 1 1 1 1 1 1 1 13110000 0 13110000 21757 895;1331 19996 113533 137622 137622 1097;1098 1 YDECLAVYR Unmodified 1187.5281 0.5281088 381 O76094;O76094-2 SRP72 Signal recognition particle subunit SRP72 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 46.762 46.589 2 0.00081485 14571 20211116_3430_TMUAki_TMT10x_P_F3 111.17 86.169 2797800 4324500 16388 5761500 4643400 4431000 2905400 3129200 3190800 2918000 3825800 2604900 4040600 238300 5756300 4407300 4566800 3046800 3240900 3256100 2858600 3670900 2 2 1 2 2 2 2 2 2 2 2 1475100 2219500 0 3076400 3714800 3479300 1993700 1659800 1596900 1502200 1989400 1373200 2074300 118880 3083900 3516400 3478800 2100000 1774600 1655900 1473600 1906900 1 1 0 1 1 1 1 1 1 1 1 1322700 2105000 16388 2685100 928600 951690 911700 1469400 1593900 1415800 1836400 1231700 1966300 119410 2672400 890950 1088100 946780 1466300 1600300 1385000 1764000 1 1 1 1 1 1 1 1 1 1 1 161490000 113380000 48103000 21758 381 19997 113534;113535;113536 137623;137624;137625 137623 3 YDEELEGERPHSFR Unmodified 1762.7911 0.79107644 207 O43290 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 35.081 34.994 4 0.00011763 9518 20211116_3429_TMUAki_TMT10x_P_F2 92.65 69.194 1393900 2220400 0 2700700 2361300 2119400 1690000 1403500 1513700 1383300 1894600 1297700 2073700 117270 2712500 2246500 2178800 1743800 1462500 1561200 1351900 1815800 3 3 0 3 3 3 3 3 3 3 3 711440 1127800 0 1332200 1760400 1609400 1010000 811630 915980 779250 998360 662390 1053100 70235 1348700 1668900 1604500 1060800 864510 938890 762390 960530 2 2 0 2 2 2 2 2 2 2 2 682430 1092600 0 1368500 600890 509950 679990 591840 597770 604080 896220 635340 1020600 47038 1363800 577610 574300 683060 597980 622320 589470 855310 1 1 0 1 1 1 1 1 1 1 1 278760000 221200000 57554000 21759 207 19998 113537;113538;113539 137626;137627;137628 137627 3 YDGFDCVYGLELNKDER Unmodified 2091.9208 0.92076999 3337 Q9Y657 SPIN1 Spindlin-1 yes yes 0 0 0 1 By MS/MS 4 0 1 1 65.882 65.716 3 0.00015342 21311 20211116_3442_TMUAki_TMT10x_S_F4 76.123 64.509 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21760 3337 19999 113540 137629 137629 1 YDGFRESEFEK Unmodified 1405.615 0.61500956 1550 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 0 1 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 46.536 46.472 3 5.355E-07 12927 20211116_3431_TMUAki_TMT10x_P_F4 135.63 112.71 24813000 37483000 603390 56143000 51475000 46500000 28644000 38682000 43843000 32614000 41589000 23107000 35046000 2992900 55813000 48819000 47790000 30719000 39542000 43858000 32102000 40189000 7 7 7 7 7 7 7 7 7 7 7 14051000 20637000 302130 29275000 45623000 39903000 22875000 21953000 24110000 18014000 22320000 13086000 19289000 1888700 29414000 43192000 39591000 24431000 23108000 24411000 17756000 21587000 4 4 4 4 4 4 4 4 4 4 4 10761000 16846000 301260 26868000 5852400 6597100 5768200 16729000 19733000 14600000 19268000 10022000 15757000 1104200 26399000 5627700 8198700 6287600 16434000 19447000 14347000 18602000 3 3 3 3 3 3 3 3 3 3 3 1732300000 1121300000 610990000 21761 1550 20000 113541;113542;113543;113544;113545 137630;137631;137632;137633;137634;137635;137636 137633 7 YDGHLPIEIK Unmodified 1183.6237 0.62372375 1031 P43490 NAMPT Nicotinamide phosphoribosyltransferase yes yes 0 0 0 0 By MS/MS By MS/MS 5 0.894 2 1 2 3 2 53.057 53.183 3 0.00049042 15889 20211116_3433_TMUAki_TMT10x_P_F5 91.549 56.742 6998300 10880000 46896 13302000 14436000 14516000 8907200 8650100 9303700 8361500 9392000 6516000 10161000 669080 13417000 13702000 14581000 9336300 9082300 9450700 8178100 9057400 4 4 2 4 4 4 4 4 4 4 4 5551200 8570400 46896 10352000 13068000 13251000 7777700 6728700 7346700 6438100 7314100 5168800 8003800 565310 10478000 12398000 13174000 8152600 7161800 7491700 6299800 7056700 3 3 2 3 3 3 3 3 3 3 3 1447100 2309500 0 2949400 1368000 1264400 1129400 1921400 1957000 1923300 2077900 1347300 2157400 103770 2938500 1304700 1406800 1183700 1920500 1958900 1878400 2000700 1 1 0 1 1 1 1 1 1 1 1 1319800000 1020200000 299580000 21762 1031 20001 113546;113547;113548;113549;113550 137637;137638;137639;137640 137638 4 YDGIILPGK Unmodified 974.54368 0.54368251 1383 P62913;P62913-2 RPL11 60S ribosomal protein L11 yes no 0 0 0 0 By MS/MS By MS/MS 7 0.953 1 2 4 4 3 8 53.396 53.628 2 0.00088192 30796 20211116_3446_TMUAki_TMT10x_S_F7 109.21 87.067 41103000 65158000 392220 70896000 55165000 75242000 47353000 50064000 68122000 55333000 56913000 38272000 60821000 3742200 71985000 52707000 75817000 49084000 52330000 67995000 53824000 55248000 16 16 13 16 16 16 16 16 16 16 16 25124000 38669000 94806 41780000 43006000 56633000 31550000 30862000 41236000 33005000 34167000 23392000 36094000 2201600 42625000 40939000 56198000 32902000 32743000 41276000 32146000 33178000 3 3 2 3 3 3 3 3 3 3 3 15979000 26489000 297410 29116000 12159000 18609000 15803000 19202000 26886000 22329000 22746000 14880000 24727000 1540700 29360000 11768000 19619000 16182000 19587000 26720000 21679000 22070000 13 13 11 13 13 13 13 13 13 13 13 3277000000 2563900000 713090000 21763 1383 20002 113551;113552;113553;113554;113555;113556;113557;113558;113559;113560;113561 137641;137642;137643;137644;137645;137646;137647;137648;137649;137650;137651;137652;137653;137654;137655;137656;137657 137650 17 YDGLVGMFDPK Oxidation (M) 1256.5747 0.57472465 637;1106 P49590;P49590-2;P12081;P12081-4;P12081-3;P12081-2 HARS2;HARS Probable histidine--tRNA ligase, mitochondrial;Histidine--tRNA ligase, cytoplasmic no no 0 0 1 0 By MS/MS 5 0 1 1 63.359 63.427 3 0.024781 19069 20211116_3444_TMUAki_TMT10x_S_F5 51.286 35.747 2029400 3461200 3707.8 3249600 2068800 2017100 1969900 3106900 2778100 2696600 2758300 1889600 3228900 172260 3311600 1981400 2155400 2028300 3091600 2790200 2650500 2661500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2029400 3461200 3707.8 3249600 2068800 2017100 1969900 3106900 2778100 2696600 2758300 1889600 3228900 172260 3311600 1981400 2155400 2028300 3091600 2790200 2650500 2661500 1 1 1 1 1 1 1 1 1 1 1 162130000 0 162130000 21764 1106;637 20003 113562 137658 137658 670 1 YDGQVAVFGSDLQEK Unmodified 1654.7839 0.7838658 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.43 1.05 2 1 3 1 4 3 63.231 63.131 2;3 6.8366E-19 19764 20211116_3431_TMUAki_TMT10x_P_F4 161.2 121.65 43671000 69065000 151990 77452000 61297000 73590000 50550000 47176000 46897000 47307000 56510000 40661000 64476000 3739500 78363000 58496000 74613000 51724000 49302000 48211000 46197000 54215000 7 7 2 7 7 7 7 7 7 7 7 28231000 44263000 151990 47728000 48644000 61686000 38920000 30920000 31053000 30447000 36074000 26285000 41315000 2538400 48654000 46392000 61289000 39743000 32976000 32113000 29755000 34644000 5 5 2 5 5 5 5 5 5 5 5 15441000 24801000 0 29724000 12653000 11904000 11629000 16256000 15844000 16860000 20436000 14376000 23161000 1201000 29709000 12104000 13324000 11980000 16327000 16097000 16442000 19571000 2 2 0 2 2 2 2 2 2 2 2 4976300000 3983000000 993290000 21765 769 20004 113563;113564;113565;113566;113567;113568;113569 137659;137660;137661;137662;137663;137664;137665;137666;137667 137662 9 YDLDFKSPDDPSR Unmodified 1553.6998 0.69980182 520 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 1 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 50.114 50.153 3 4.8447E-09 14868 20211116_3442_TMUAki_TMT10x_S_F4 124.42 80.604 24489000 40838000 367730 54359000 44777000 44247000 27305000 39110000 42065000 33584000 39467000 22804000 38157000 2640900 54349000 42516000 45584000 29067000 39858000 42056000 33027000 38153000 6 6 3 6 6 6 6 6 6 6 6 11675000 18816000 304930 25820000 36841000 35922000 20351000 18873000 20156000 16092000 19072000 10872000 17583000 1594100 25997000 34928000 35588000 21499000 19966000 20476000 15831000 18432000 3 3 2 3 3 3 3 3 3 3 3 12814000 22022000 62792 28539000 7936300 8325100 6954200 20237000 21909000 17492000 20395000 11932000 20573000 1046700 28352000 7588400 9995600 7568200 19893000 21580000 17197000 19721000 3 3 1 3 3 3 3 3 3 3 3 3652100000 2422400000 1229700000 21766 520 20005 113570;113571;113572;113573;113574;113575 137668;137669;137670;137671;137672;137673 137672 6 YDLTVPFAR Unmodified 1080.5604 0.56039521 637;1106 P49590;P49590-2;P12081;P12081-4;P12081-3;P12081-2 HARS2;HARS Probable histidine--tRNA ligase, mitochondrial;Histidine--tRNA ligase, cytoplasmic no no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 61.62 61.926 2 0.00012975 20128 20211116_3435_TMUAki_TMT10x_P_F7 138.54 82.869 33538000 57187000 264340 57358000 44614000 51795000 38930000 40628000 36366000 37789000 44699000 31229000 53362000 3147300 58419000 42649000 52857000 39706000 41787000 37404000 37024000 42862000 4 4 3 4 4 4 4 4 4 4 4 17636000 30206000 15106 29319000 24484000 37527000 23366000 22024000 19503000 20294000 23424000 16421000 28182000 1537400 30096000 23447000 37375000 23640000 23123000 20149000 19891000 22475000 2 2 1 2 2 2 2 2 2 2 2 15902000 26981000 249230 28039000 20130000 14268000 15564000 18604000 16863000 17495000 21275000 14808000 25180000 1609900 28323000 19202000 15482000 16066000 18664000 17255000 17132000 20387000 2 2 2 2 2 2 2 2 2 2 2 2968600000 1518000000 1450600000 21767 1106;637 20006 113576;113577;113578;113579 137674;137675;137676;137677 137675 4 YDPSLTFSENVDLTEPIISR Unmodified 2295.1271 0.12705759 1114 P49736 MCM2 DNA replication licensing factor MCM2 yes yes 0 0 0 0 By MS/MS 4 0 1 1 78.218 78.235 3 3.2576E-05 26003 20211116_3431_TMUAki_TMT10x_P_F4 77.391 67.052 2004200 3441200 0 3002300 1990500 4299800 2479700 2575700 2464200 2734100 3066400 1865500 3209400 94547 3113300 1916200 4261600 2489200 2710500 2529000 2663800 2939400 1 1 0 1 1 1 1 1 1 1 1 2004200 3441200 0 3002300 1990500 4299800 2479700 2575700 2464200 2734100 3066400 1865500 3209400 94547 3113300 1916200 4261600 2489200 2710500 2529000 2663800 2939400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 660260000 660260000 0 21768 1114 20007 113580 137678 137678 1 YDPTIEDSYR Unmodified 1257.5513 0.55134667 1304 P61224;P61224-2;P61224-3;P62834;A6NIZ1 RAP1B;RAP1A Ras-related protein Rap-1b;Ras-related protein Rap-1A;Ras-related protein Rap-1b-like protein yes no 0 0 0 0 By MS/MS 3 0 1 1 42.738 42.784 2 7.1451E-05 13053 20211116_3430_TMUAki_TMT10x_P_F3 128.58 98.503 757580 1126700 0 1676700 2917800 2317700 1220500 1174700 1451100 982960 1285900 705290 1053400 81831 1681200 2754300 2295900 1333900 1246300 1460300 967910 1245500 2 2 0 2 2 2 2 2 2 2 2 757580 1126700 0 1676700 2917800 2317700 1220500 1174700 1451100 982960 1285900 705290 1053400 81831 1681200 2754300 2295900 1333900 1246300 1460300 967910 1245500 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23970000 23970000 0 21769 1304 20008 113581 137679;137680 137679 2 YDPTIEDSYRK Unmodified 1385.6463 0.64630969 1304 P61224;P61224-2;P61224-3;P62834 RAP1B;RAP1A Ras-related protein Rap-1b;Ras-related protein Rap-1A yes no 0 0 0 1 By MS/MS 4 0 1 1 39.756 39.954 3 8.2603E-07 10751 20211116_3442_TMUAki_TMT10x_S_F4 133.05 115.32 611100 879180 5138 1421300 613170 431190 604040 709800 812710 475410 1070700 569030 822390 55482 1396900 588020 506600 619640 700600 826820 473970 1024800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 611100 879180 5138 1421300 613170 431190 604040 709800 812710 475410 1070700 569030 822390 55482 1396900 588020 506600 619640 700600 826820 473970 1024800 1 1 1 1 1 1 1 1 1 1 1 59099000 0 59099000 21770 1304 20009 113582 137681 137681 1 YDQATDTILTVTENIFSSMGDAGEMVR 2 Oxidation (M) 2995.3427 0.34268239 3293 Q9Y490 TLN1 Talin-1 yes yes 0 0 2 0 By MS/MS By matching 3.33 0.471 2 1 2 1 81.842 81.818 3 0.0079697 28993 20211116_3430_TMUAki_TMT10x_P_F3 43.291 34.582 857240 1315200 0 1154600 768930 1519300 887180 686400 720220 959000 1091800 798020 1226600 50680 1194600 739010 1506600 888550 748080 753190 925380 1041700 2 2 0 2 2 2 2 2 2 2 2 857240 1315200 0 1154600 768930 1519300 887180 686400 720220 959000 1091800 798020 1226600 50680 1194600 739010 1506600 888550 748080 753190 925380 1041700 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 396410000 304690000 91726000 21771 3293 20010 113583;113584;113585 137682;137683 137682 3264;3265 2 YDVGAIR Unmodified 792.413 0.41300269 1122 P49792;Q7Z3J3;Q99666;O14715;Q99666-2 RANBP2;RGPD4;RGPD5;RGPD8 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 no no 0 0 0 0 By MS/MS 4 0 1 1 35.61 35.717 2 0.10088 9014 20211116_3442_TMUAki_TMT10x_S_F4 54.205 8.1893 236730 393040 16493 367920 230740 195940 258660 195800 217840 177130 252540 220540 366650 34914 374540 222950 210210 259650 198520 224630 173760 242540 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 236730 393040 16493 367920 230740 195940 258660 195800 217840 177130 252540 220540 366650 34914 374540 222950 210210 259650 198520 224630 173760 242540 1 1 1 1 1 1 1 1 1 1 1 5363400 0 5363400 21772 1122 20011 113586 137684 137684 1 YDWDLLAAR Unmodified 1121.5506 0.55055881 1757 Q15029;Q15029-2;Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 2 3 69.04 68.913 2 3.0682E-05 22130 20211116_3431_TMUAki_TMT10x_P_F4 108.74 86.972 11600000 18095000 90609 19137000 13364000 16088000 13672000 8556700 8181700 9478800 13754000 10802000 16888000 1070900 19404000 12827000 16408000 13682000 9107600 8761400 9219500 13095000 2 2 2 2 2 2 2 2 2 2 2 6629800 10070000 31877 10507000 7710000 11647000 8257900 4904700 4987100 5361000 7647700 6173200 9397700 594490 10705000 7408400 11644000 8246400 5340700 5311000 5217000 7295100 1 1 1 1 1 1 1 1 1 1 1 4970600 8024900 58731 8630700 5654100 4440400 5413700 3652100 3194600 4117800 6105800 4628600 7490400 476410 8699200 5418900 4764400 5435200 3766900 3450400 4002500 5799900 1 1 1 1 1 1 1 1 1 1 1 1399400000 358520000 1040900000 21773 1757 20012 113587;113588;113589;113590;113591 137685;137686;137687 137685 3 YDYNSGEELESYK Unmodified 1595.6627 0.66274761 3284 Q9Y3F4;Q9Y3F4-2 STRAP Serine-threonine kinase receptor-associated protein yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 3 3 4 2 53.474 53.248 2;3 4.0648E-30 17408 20211116_3430_TMUAki_TMT10x_P_F3 253.79 213.63 10303000 16175000 63994 25454000 27512000 24701000 14442000 16208000 17129000 12389000 17253000 9593100 15127000 1110700 25301000 26053000 25019000 15416000 16793000 17313000 12257000 16639000 7 7 3 7 7 7 7 7 7 7 7 6992000 10796000 61293 18215000 24840000 22139000 12256000 10824000 11973000 8375600 12002000 6510400 10102000 858270 18117000 23503000 22057000 13081000 11503000 12194000 8280900 11577000 5 5 2 5 5 5 5 5 5 5 5 3310900 5378400 2701.3 7239900 2672800 2561700 2185800 5384200 5156200 4013800 5251100 3082600 5025600 252390 7184500 2549700 2961700 2334500 5290800 5118900 3976600 5062600 2 2 1 2 2 2 2 2 2 2 2 1087800000 853940000 233810000 21774 3284 20013 113592;113593;113594;113595;113596;113597 137688;137689;137690;137691;137692;137693;137694 137691 7 YDYNSGEELESYKGHFGPIHCVR Unmodified 2756.2289 0.22891368 3284 Q9Y3F4;Q9Y3F4-2 STRAP Serine-threonine kinase receptor-associated protein yes no 0 0 0 1 By MS/MS By MS/MS 6 1 1 1 1 1 50.151 50.568 5 3.3623E-15 15527 20211116_3435_TMUAki_TMT10x_P_F7 127.01 112.08 4200800 8017900 25480 7138800 6325200 9746400 5818200 8900100 7816400 7237400 7073800 3911500 7478200 391700 7383800 6053000 9749100 5990000 9042000 7838000 7136900 6846900 2 2 1 2 2 2 2 2 2 2 2 2285200 4120300 0 3048000 4007300 7796300 3523000 5575200 4968200 4421200 3897600 2127600 3840700 203500 3256200 3829600 7599500 3643600 5746100 4953100 4365500 3793000 1 1 0 1 1 1 1 1 1 1 1 1915700 3897600 25480 4090800 2317800 1950100 2295100 3324900 2848200 2816100 3176200 1783900 3637600 188200 4127600 2223400 2149600 2346400 3295900 2885000 2771300 3053800 1 1 1 1 1 1 1 1 1 1 1 754390000 517040000 237350000 21775 3284 20014 113598;113599 137695;137696 137695 2 YDYQRQPDSGISSIR Unmodified 1783.8489 0.84892567 494 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 37.484 37.545 3 6.4723E-44 8495 20211116_3444_TMUAki_TMT10x_S_F5 268.93 262.73 3260500 5167400 18787 7311100 9631700 7789400 4569300 6646800 7935400 4480000 5993300 3035900 4829700 364730 7314300 9108400 7880100 5003800 6750800 7856700 4464700 5841700 5 5 2 5 5 5 5 5 5 5 5 2250300 3507300 16019 5013000 8823200 7076200 3936100 4484500 5286000 3066800 4098000 2095300 3278300 282830 5038600 8337500 7023300 4289900 4647900 5276400 3053600 3990000 3 3 1 3 3 3 3 3 3 3 3 1010200 1660100 2768.2 2298100 808510 713150 633210 2162300 2649400 1413200 1895300 940620 1551400 81897 2275700 770890 856830 713880 2102900 2580300 1411100 1851700 2 2 1 2 2 2 2 2 2 2 2 440050000 325370000 114690000 21776 494 20015 113600;113601;113602 137697;137698;137699;137700;137701 137700 5 YEAAGTLVTLSSAPTAIK Unmodified 1791.9618 0.96183016 1206 P53618 COPB1 Coatomer subunit beta yes yes 0 0 0 0 By MS/MS 1 0 1 1 69.22 69.031 3 0.00010798 23804 20211116_3439_TMUAki_TMT10x_S_F1 71.601 54.721 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21777 1206 20016 113603 137702 137702 1 YEDAYQYQNIFGPLVK Unmodified 1946.9414 0.94142907 2376 Q92900;Q92900-2 UPF1 Regulator of nonsense transcripts 1 yes no 0 0 0 0 By MS/MS By MS/MS 7.4 0.49 3 2 2 3 78.406 78.423 2;3 6.86E-10 27637 20211116_3446_TMUAki_TMT10x_S_F7 120.96 105.39 19089000 30678000 202980 27980000 19896000 27944000 22783000 15557000 17171000 19020000 21316000 17774000 28616000 1705800 28734000 19157000 28192000 22785000 16547000 17862000 18434000 20434000 4 4 3 4 4 4 4 4 4 4 4 11388000 17950000 58088 17028000 10661000 20036000 12744000 9652400 10517000 11789000 13311000 10603000 16746000 910850 17481000 10273000 19992000 12749000 10402000 10896000 11426000 12754000 3 3 2 3 3 3 3 3 3 3 3 7701000 12728000 144890 10952000 9235300 7908300 10038000 5905000 6654000 7230900 8004500 7171500 11870000 795000 11253000 8884200 8199200 10036000 6144600 6965400 7007400 7679900 1 1 1 1 1 1 1 1 1 1 1 3195200000 1682000000 1513200000 21778 2376 20017 113604;113605;113606;113607;113608 137703;137704;137705;137706;137707 137707 5 YEDFSNLGTTHLLR Unmodified 1664.8158 0.81583463 774 P22695 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 6.12 0.781 2 3 3 4 4 56.971 57.169 3 7.42E-15 17560 20211116_3433_TMUAki_TMT10x_P_F5 158.52 134.23 25846000 43663000 276590 42486000 30434000 37383000 25501000 36569000 35518000 32275000 34450000 24067000 40738000 2406200 43349000 29071000 38380000 26434000 37094000 35657000 31698000 33266000 9 9 6 9 9 9 9 9 9 9 9 9016900 14853000 87402 14463000 13644000 21906000 11718000 13730000 13317000 12696000 12583000 8396000 13858000 857530 14894000 13037000 21674000 12036000 14342000 13452000 12442000 12161000 4 4 2 4 4 4 4 4 4 4 4 16829000 28810000 189190 28023000 16790000 15477000 13782000 22839000 22201000 19578000 21867000 15671000 26879000 1548700 28456000 16034000 16706000 14398000 22752000 22205000 19256000 21105000 5 5 4 5 5 5 5 5 5 5 5 2906100000 1212100000 1694100000 21779 774 20018 113609;113610;113611;113612;113613;113614;113615;113616 137708;137709;137710;137711;137712;137713;137714;137715;137716;137717;137718;137719 137708 12 YEEIVKEVSTYIK Unmodified 1599.8396 0.83958976 1416 P68104;Q5VTE0 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 77.571 77.594 3 1.1194E-11 25430 20211116_3436_TMUAki_TMT10x_P_F8 148.7 129.49 17294000 34093000 295280 20662000 26869000 49733000 29921000 42004000 43765000 42982000 32762000 16105000 31762000 1843100 22462000 25858000 48698000 30619000 43126000 43528000 41938000 31945000 4 4 4 4 4 4 4 4 4 4 4 10028000 19992000 94432 11426000 15854000 37645000 19682000 26220000 26931000 26739000 19947000 9338000 18622000 1001000 12654000 15303000 36476000 19989000 27251000 26833000 26093000 19459000 2 2 2 2 2 2 2 2 2 2 2 7266300 14102000 200850 9235600 11015000 12088000 10238000 15784000 16834000 16243000 12815000 6767100 13140000 842120 9808200 10555000 12222000 10630000 15876000 16695000 15845000 12486000 2 2 2 2 2 2 2 2 2 2 2 3052500000 1838400000 1214100000 21780 1416 20019 113617;113618;113619;113620 137720;137721;137722;137723 137721 4 YEEIVKEVSTYIKK Unmodified 1727.9346 0.93455278 1416 P68104;Q5VTE0 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 0 0 0 2 By MS/MS By MS/MS 5 2.93 1 2 2 2 3 4 74.613 74.604 4 1.011E-18 25616 20211116_3429_TMUAki_TMT10x_P_F2 165.02 140.32 52115000 106290000 188580 60696000 93991000 163780000 88684000 152620000 152820000 142390000 103410000 48520000 99010000 4410400 66682000 89957000 160240000 92219000 155430000 150910000 139490000 101290000 9 9 3 9 9 9 9 9 9 9 9 32542000 66881000 182920 38642000 67201000 131360000 67773000 93092000 91808000 87189000 64671000 30298000 62302000 3024800 42802000 64440000 127240000 69459000 96404000 91384000 85397000 63226000 5 5 2 5 5 5 5 5 5 5 5 19573000 39410000 5662.6 22054000 26790000 32415000 20911000 59527000 61010000 55203000 38740000 18222000 36708000 1385600 23880000 25518000 32993000 22759000 59025000 59522000 54092000 38061000 4 4 1 4 4 4 4 4 4 4 4 9183300000 4996700000 4186600000 21781 1416 20020 113621;113622;113623;113624;113625;113626;113627 137724;137725;137726;137727;137728;137729;137730;137731;137732 137725 9 YEEVSVSGFEEFHR Unmodified 1713.7635 0.76346471 2633 Q9BRA2 TXNDC17 Thioredoxin domain-containing protein 17 yes yes 0 0 0 0 By MS/MS By MS/MS 3.27 1.6 2 2 2 2 2 1 6 5 54.393 54.291 3 1.0986E-33 17792 20211116_3430_TMUAki_TMT10x_P_F3 232.6 219.47 42204000 75749000 733290 75772000 63077000 84117000 51337000 68203000 66633000 63794000 66652000 39301000 70682000 3986400 77423000 60220000 84821000 53160000 70015000 67119000 62486000 64296000 14 14 8 14 14 14 14 14 14 14 14 24652000 43370000 215900 43070000 41843000 63083000 34082000 37936000 36483000 35851000 37496000 22954000 40468000 2038900 44259000 39931000 62465000 35051000 39778000 37046000 35100000 36140000 8 8 4 8 8 8 8 8 8 8 8 17553000 32379000 517390 32701000 21234000 21034000 17255000 30266000 30150000 27942000 29156000 16347000 30214000 1947500 33164000 20288000 22355000 18110000 30237000 30073000 27385000 28156000 6 6 4 6 6 6 6 6 6 6 6 9504500000 5609600000 3894900000 21782 2633 20021 113628;113629;113630;113631;113632;113633;113634;113635;113636;113637;113638 137733;137734;137735;137736;137737;137738;137739;137740;137741;137742;137743;137744;137745;137746;137747;137748 137736 16 YEFTDALLCHDDELEGRR Unmodified 2238.0011 0.0011455721 2197 Q8N543;Q8N543-2 OGFOD1 Prolyl 3-hydroxylase OGFOD1 yes no 0 0 0 1 By matching By MS/MS 2.5 0.5 1 1 1 1 57.383 57.055 4 2.4193E-06 20030 20211116_3441_TMUAki_TMT10x_S_F3 97.129 86.79 2459000 4314800 97109 4679200 2797300 2215300 2763000 3050500 2588400 2908600 3317800 2290300 4027500 299110 4710900 2687200 2427500 2799100 3055200 2666800 2846600 3178000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2459000 4314800 97109 4679200 2797300 2215300 2763000 3050500 2588400 2908600 3317800 2290300 4027500 299110 4710900 2687200 2427500 2799100 3055200 2666800 2846600 3178000 1 1 1 1 1 1 1 1 1 1 1 819780000 442630000 377140000 21783 2197 20022 113639;113640 137749 137749 1 YEGSGEDGGAAAQSLYIANHAY Unmodified 2242.9767 0.97670496 590 P09972 ALDOC Fructose-bisphosphate aldolase C yes yes 0 0 0 0 By MS/MS 3 0 1 1 58.894 58.483 3 0.10483 20597 20211116_3441_TMUAki_TMT10x_S_F3 27.18 23.212 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21784 590 20023 113641 137750 137750 1 YEIMDGAPVKGESIPIR Oxidation (M) 1889.9557 0.95569893 334 O75436 VPS26A Vacuolar protein sorting-associated protein 26A yes yes 0 0 1 1 By MS/MS 4.5 0.5 1 1 2 50.449 50.607 3 0.021061 13778 20211116_3444_TMUAki_TMT10x_S_F5 44.391 26.026 4758200 8321100 0 9080000 4174900 4118100 3207200 7909700 8098900 7043000 7365900 4430200 7767300 376300 9135300 3978100 4586500 3455200 7824700 7999100 6914300 7128300 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4758200 8321100 0 9080000 4174900 4118100 3207200 7909700 8098900 7043000 7365900 4430200 7767300 376300 9135300 3978100 4586500 3455200 7824700 7999100 6914300 7128300 2 2 0 2 2 2 2 2 2 2 2 591830000 0 591830000 21785 334 20024 113642;113643 137751;137752 137752 245 2 YEISSVPTFLFFK Unmodified 1576.8177 0.81773211 376 O76003 GLRX3 Glutaredoxin-3 yes yes 0 0 0 0 By MS/MS By MS/MS 2.75 0.661 3 4 1 4 4 80.714 80.683 2;3 5.5218E-30 28514 20211116_3430_TMUAki_TMT10x_P_F3 252.42 193.74 68151000 101200000 647270 118450000 60221000 63407000 70266000 30093000 35789000 39262000 66680000 63456000 94494000 5677700 118800000 58004000 67241000 69682000 32552000 39014000 37968000 63368000 9 9 5 9 9 9 9 9 9 9 9 30159000 45164000 213820 53488000 22686000 36101000 25885000 13634000 15634000 16215000 28087000 28081000 42174000 2475200 53718000 21838000 37345000 25771000 15073000 16795000 15730000 26709000 4 4 3 4 4 4 4 4 4 4 4 37992000 56035000 433450 64962000 37536000 27306000 44382000 16459000 20156000 23047000 38594000 35375000 52320000 3202600 65078000 36167000 29896000 43910000 17479000 22219000 22237000 36659000 5 5 2 5 5 5 5 5 5 5 5 9529900000 4737100000 4792800000 21786 376 20025 113644;113645;113646;113647;113648;113649;113650;113651 137753;137754;137755;137756;137757;137758;137759;137760;137761 137756 9 YELGRPAANTK Unmodified 1218.6357 0.63568542 1338 P62241 RPS8 40S ribosomal protein S8 yes yes 0 0 0 1 By MS/MS 5 0 1 1 33.009 32.954 3 0.05491 7898 20211116_3433_TMUAki_TMT10x_P_F5 43.798 29.803 1138700 1870500 0 1793800 2472100 2780100 1530900 1781200 1599100 1373800 1586600 1060100 1745100 93799 1850100 2345400 2748900 1604200 1849300 1623400 1358500 1530900 1 1 0 1 1 1 1 1 1 1 1 1138700 1870500 0 1793800 2472100 2780100 1530900 1781200 1599100 1373800 1586600 1060100 1745100 93799 1850100 2345400 2748900 1604200 1849300 1623400 1358500 1530900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 104860000 104860000 0 21787 1338 20026 113652 137762 137762 1 YELISETGGSHDK Unmodified 1434.6627 0.66268803 1576;2556 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3;Q96SI9;Q96SI9-2 ILF3;STRBP Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein no no 0 0 0 0 By MS/MS 4 0 1 1 39.796 39.994 3 0.038855 10773 20211116_3442_TMUAki_TMT10x_S_F4 46.276 29.702 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21788 1576;2556 20027 113653 137763 137763 1 YELISETGGSHDKR Unmodified 1590.7638 0.76379906 1576;2556 Q12906-7;Q12906;Q12906-4;Q12906-6;Q12906-5;Q12906-2;Q12906-3;Q96SI9;Q96SI9-2 ILF3;STRBP Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein no no 0 0 0 1 By MS/MS 5 0 1 1 34.224 34.402 4 5.5299E-14 7252 20211116_3444_TMUAki_TMT10x_S_F5 147.52 128.79 405230 726600 0 813900 467470 412700 446880 557860 614950 472990 693360 377300 678320 33389 818150 447650 448440 459570 557320 621030 465440 666430 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 405230 726600 0 813900 467470 412700 446880 557860 614950 472990 693360 377300 678320 33389 818150 447650 448440 459570 557320 621030 465440 666430 2 2 0 2 2 2 2 2 2 2 2 37971000 0 37971000 21789 1576;2556 20028 113654 137764;137765 137765 2 YELTGKFER Unmodified 1141.5768 0.57677356 548 P08133;P08133-2 ANXA6 Annexin A6 yes no 0 0 0 1 By MS/MS 7 0 1 1 42.957 43.506 3 0.068048 13176 20211116_3446_TMUAki_TMT10x_S_F7 50.09 19.835 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21790 548 20029 113655 137766 137766 1 YESLTDPSKLDSGK Unmodified 1538.7464 0.74641766 553;544;1914 P07900;P07900-2;P08238;Q58FF7;Q58FF8 HSP90AA1;HSP90AB1;HSP90AB3P;HSP90AB2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 2 no no 0 0 0 1 By MS/MS By MS/MS 5.71 1.03 1 2 2 2 3 4 49.658 49.869 3 5.4005E-14 13767 20211116_3445_TMUAki_TMT10x_S_F6 150.59 118.31 41691000 63069000 287760 95749000 186950000 112560000 68061000 93099000 141320000 59724000 106280000 38819000 58972000 5545600 95623000 176270000 113200000 77521000 94640000 139320000 59704000 103610000 11 11 7 11 11 11 11 11 11 11 11 18846000 28041000 148700 44260000 166730000 91355000 44605000 42238000 62128000 27545000 45955000 17547000 26226000 3608800 44711000 156800000 89058000 52173000 44983000 61864000 27507000 44832000 6 6 3 6 6 6 6 6 6 6 6 22845000 35028000 139060 51489000 20214000 21209000 23456000 50861000 79188000 32179000 60324000 21272000 32746000 1936800 50912000 19469000 24141000 25348000 49657000 77452000 32197000 58776000 5 5 4 5 5 5 5 5 5 5 5 5896200000 3217000000 2679100000 21791 544;553;1914 20030 113656;113657;113658;113659;113660;113661;113662 137767;137768;137769;137770;137771;137772;137773;137774;137775;137776;137777;137778 137776 12 YESSALPSGQLTSLSEYASR Unmodified 2145.0226 0.022592521 1578 Q12931;Q12931-2 TRAP1 Heat shock protein 75 kDa, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 5.38 0.696 1 3 4 4 4 64.71 64.72 2;3 8.3795E-118 19867 20211116_3445_TMUAki_TMT10x_S_F6 360.25 327.02 40627000 68273000 254330 67110000 46467000 66314000 46985000 42620000 40064000 43739000 48476000 37825000 63702000 2770000 68534000 44550000 67073000 47417000 44562000 41359000 42672000 46503000 16 16 7 16 16 16 16 16 16 16 16 28746000 46194000 158560 46025000 31999000 53747000 34517000 29184000 27230000 29918000 33330000 26763000 43103000 1729400 47081000 30726000 53726000 34655000 30934000 28237000 29190000 31963000 11 11 4 11 11 11 11 11 11 11 11 11880000 22080000 95772 21085000 14468000 12567000 12468000 13436000 12834000 13821000 15146000 11062000 20599000 1040600 21453000 13824000 13347000 12763000 13629000 13122000 13482000 14540000 5 5 3 5 5 5 5 5 5 5 5 10989000000 5875000000 5113600000 21792 1578 20031 113663;113664;113665;113666;113667;113668;113669;113670 137779;137780;137781;137782;137783;137784;137785;137786;137787;137788;137789;137790;137791;137792;137793;137794 137794 16 YESSTASALVA Unmodified 1097.5241 0.52406928 1347 P62277 RPS13 40S ribosomal protein S13 yes yes 0 0 0 0 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 51.184 50.944 2 4.4173E-07 17529 20211116_3441_TMUAki_TMT10x_S_F3 138.9 112.82 7750500 11846000 15550 13697000 13141000 15007000 9094800 9673600 10968000 8953500 10205000 7216200 11061000 682620 13862000 12496000 15088000 9494800 10083000 11049000 8774100 9868000 3 3 1 3 3 3 3 3 3 3 3 6461800 9629000 0 11032000 12091000 13943000 8180500 8175500 9222900 7444100 8350500 6016200 8990100 564630 11199000 11491000 13895000 8534600 8581400 9306200 7300400 8082400 2 2 0 2 2 2 2 2 2 2 2 1288700 2217100 15550 2664300 1050200 1063900 914270 1498200 1745200 1509400 1854500 1200000 2070500 117990 2662600 1004500 1192300 960220 1501700 1742900 1473700 1785600 1 1 1 1 1 1 1 1 1 1 1 904490000 613590000 290910000 21793 1347 20032 113671;113672;113673 137795;137796;137797 137797 3 YETSSTSAGDRYDSLLGR Unmodified 1976.9076 0.90756276 149 O14974;O14974-4;O14974-3;O14974-2;O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 0 0 0 1 By MS/MS By MS/MS 4 0 2 1 1 44.056 44.211 3 1.5784E-17 12093 20211116_3431_TMUAki_TMT10x_P_F4 152.94 133.69 13978000 22111000 90561 30296000 24579000 23022000 13916000 22813000 24858000 18295000 22201000 13016000 20662000 1376200 30220000 23304000 23897000 15012000 23070000 24716000 18054000 21499000 4 4 2 4 4 4 4 4 4 4 4 6477200 10099000 90561 13413000 18641000 17845000 8748900 10535000 11816000 8808200 10067000 6031600 9435500 791760 13516000 17630000 17742000 9486500 11029000 11824000 8673700 9765700 2 2 2 2 2 2 2 2 2 2 2 7500900 12012000 0 16883000 5938800 5176700 5167200 12278000 13042000 9486900 12134000 6983900 11227000 584420 16704000 5674000 6155400 5525400 12041000 12891000 9380400 11733000 2 2 0 2 2 2 2 2 2 2 2 1038500000 832400000 206100000 21794 149 20033 113674;113675 137798;137799;137800;137801 137799 4 YETVIMPVFGIATPFHIATIK Oxidation (M) 2363.2599 0.25992644 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 1 0 By MS/MS By matching 3.5 0.5 1 1 1 1 78.682 78.622 3 0.0057036 27693 20211116_3430_TMUAki_TMT10x_P_F3 49.188 37.939 3165000 5352200 0 4155600 2837600 6785000 3922000 3495900 3526000 4773400 4254400 2945800 4989700 115340 4363200 2738800 6676000 3909300 3758700 3630300 4609300 4081500 1 1 0 1 1 1 1 1 1 1 1 3165000 5352200 0 4155600 2837600 6785000 3922000 3495900 3526000 4773400 4254400 2945800 4989700 115340 4363200 2738800 6676000 3909300 3758700 3630300 4609300 4081500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 870610000 360980000 509630000 21795 3317 20034 113676;113677 137802 137802 3277 1 YEWDVAEAR Unmodified 1137.5091 0.50908792 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 49.043 48.9 2 3.4013E-05 16695 20211116_3441_TMUAki_TMT10x_S_F3 125.04 108.84 9516300 14030000 0 22479000 17623000 13471000 11851000 6216500 6348900 6673200 11493000 8860300 13123000 859130 22201000 16750000 14116000 12152000 6700300 6882200 6498600 10928000 3 3 0 3 3 3 3 3 3 3 3 6609300 9791500 0 15687000 16160000 12123000 10247000 4473300 4485900 4695800 7959200 6153700 9158600 649420 15534000 15344000 12398000 10525000 4940900 4939000 4577000 7570500 2 2 0 2 2 2 2 2 2 2 2 2907000 4238700 0 6792200 1462900 1348800 1603700 1743200 1863000 1977400 3534200 2706600 3964700 209700 6667400 1405500 1718700 1627400 1759500 1943200 1921600 3357600 1 1 0 1 1 1 1 1 1 1 1 1324400000 1061300000 263090000 21796 653 20035 113678;113679;113680;113681;113682;113683 137803;137804;137805;137806;137807;137808 137808 6 YEYHWADGTNIK Unmodified 1495.6732 0.67319314 2065 Q7L9L4;Q9H8S9;Q7L9L4-2;Q9H8S9-2 MOB1B;MOB1A MOB kinase activator 1B;MOB kinase activator 1A yes no 0 0 0 0 By MS/MS 5 0 1 1 48.142 48.313 3 0.090618 14016 20211116_3433_TMUAki_TMT10x_P_F5 29.616 21.103 2060000 3097100 27033 3384900 4224200 4832900 2913100 2904900 2946900 2687400 2970600 1918300 2891000 226290 3454500 4019000 4790800 3024500 3044300 2997400 2633600 2864900 1 1 1 1 1 1 1 1 1 1 1 2060000 3097100 27033 3384900 4224200 4832900 2913100 2904900 2946900 2687400 2970600 1918300 2891000 226290 3454500 4019000 4790800 3024500 3044300 2997400 2633600 2864900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 207440000 207440000 0 21797 2065 20036 113684 137809 137809 1 YEYQPFAGK Unmodified 1101.5131 0.51311067 307 O75083 WDR1 WD repeat-containing protein 1 yes yes 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 51.302 51.452 2 0.0021478 14047 20211116_3434_TMUAki_TMT10x_P_F6 82.426 54.544 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21798 307 20037 113685;113686 137810;137811 137811 2 YFAGNLASGGAAGATSLCFVYPLDFAR Unmodified 2795.3377 0.33773584 639;638 P12235;P12236 SLC25A4;SLC25A6 ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS 3.88 0.331 1 7 5 3 81.823 81.813 2;3;4 7.4783E-52 27315 20211116_3442_TMUAki_TMT10x_S_F4 210.43 199.49 7070400 11890000 47256 11658000 8338200 14222000 9630900 6247200 7396500 7653700 10584000 6582800 11094000 390410 11948000 8024400 14151000 9632200 6796300 7735500 7417100 10111000 7 7 1 7 7 7 7 7 7 7 7 5585100 9152500 47256 9318100 6433800 12384000 7435100 4768800 6077400 6061500 8670000 5200000 8540800 276680 9540200 6192000 12256000 7447400 5271700 6334100 5866800 8283400 5 5 1 5 5 5 5 5 5 5 5 1485300 2737900 0 2339700 1904400 1837900 2195800 1478300 1319100 1592200 1913500 1382800 2553300 113740 2407500 1832400 1895200 2184900 1524600 1401400 1550300 1827500 2 2 0 2 2 2 2 2 2 2 2 12187000000 8262800000 3923800000 21799 638;639 20038 113687;113688;113689;113690;113691;113692;113693;113694 137812;137813;137814;137815;137816;137817;137818;137819;137820 137818 9 YFAQEALTVLSLA Unmodified 1424.7551 0.75513185 869 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 0 0 By MS/MS By MS/MS 6.43 1.29 1 3 1 2 3 4 84.652 84.663 2 2.2525E-05 28274 20211116_3436_TMUAki_TMT10x_P_F8 101.65 86.495 1114300 1912500 18295 1629100 1299600 1506000 1350400 1383700 1434400 1387100 1491500 1037700 1783500 108360 1680100 1248300 1539100 1369700 1413100 1457600 1354500 1437000 3 3 2 3 3 3 3 3 3 3 3 204260 307800 2538 264110 170640 432210 249250 254370 279170 268410 243880 190210 287050 18829 275040 165750 425940 249640 268020 281440 261570 236350 1 1 1 1 1 1 1 1 1 1 1 910070 1604700 15757 1365000 1129000 1073800 1101200 1129300 1155200 1118700 1247600 847450 1496400 89531 1405100 1082500 1113100 1120100 1145100 1176100 1093000 1200700 2 2 1 2 2 2 2 2 2 2 2 87021000 28373000 58648000 21800 869 20039 113695;113696;113697;113698;113699;113700;113701 137821;137822;137823;137824;137825;137826;137827 137823 7 YFCHCCSVEIVPR Unmodified 1725.7426 0.74255181 2685 Q9BV68 RNF126 E3 ubiquitin-protein ligase RNF126 yes yes 0 0 0 0 By MS/MS 7 0 1 1 44.475 45 3 0.00017921 13794 20211116_3446_TMUAki_TMT10x_S_F7 82.774 70.414 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21801 2685 20040 113702 137828 137828 1 YFDEHYEYR Unmodified 1320.5411 0.54111633 910 P33552 CKS2 Cyclin-dependent kinases regulatory subunit 2 yes yes 0 0 0 0 By MS/MS By MS/MS 2.75 0.829 2 1 1 1 3 39.301 39.294 3 1.1102E-05 11405 20211116_3429_TMUAki_TMT10x_P_F2 114.97 107.04 4633900 7858300 43135 8525400 4467500 3473200 4628300 4438200 4895900 3969200 5723600 4314300 7335100 348190 8574600 4285500 3871600 4694500 4449700 4998400 3895900 5495700 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4633900 7858300 43135 8525400 4467500 3473200 4628300 4438200 4895900 3969200 5723600 4314300 7335100 348190 8574600 4285500 3871600 4694500 4449700 4998400 3895900 5495700 3 3 2 3 3 3 3 3 3 3 3 169370000 0 169370000 21802 910 20041 113703;113704;113705;113706 137829;137830;137831;137832 137829 4 YFDGSGGNNHAVEHYR Unmodified 1821.7819 0.78190874 1036 P45974;P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 0 0 0 0 By MS/MS 4 0 1 1 30.97 31.004 4 3.1392E-05 6768 20211116_3431_TMUAki_TMT10x_P_F4 89.506 84.211 671520 1077700 19518 1645400 2911900 1753800 871810 733500 991440 685330 1095800 625330 1007800 96132 1640100 2741400 1757100 994690 795820 1007100 671310 1053800 2 2 1 2 2 2 2 2 2 2 2 671520 1077700 19518 1645400 2911900 1753800 871810 733500 991440 685330 1095800 625330 1007800 96132 1640100 2741400 1757100 994690 795820 1007100 671310 1053800 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 48770000 48770000 0 21803 1036 20042 113707 137833;137834 137833 2 YFDLGLPNRDQTDDQVTIDSALATQK Unmodified 2923.4199 0.41994515 1083 P48735;P48735-2 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 5.07 1.16 1 4 4 3 2 7 7 75.823 75.821 3;4 9.562E-74 24049 20211116_3444_TMUAki_TMT10x_S_F5 243.35 216.51 110160000 189390000 1021000 179590000 123600000 141460000 127940000 77203000 79417000 90797000 124400000 102570000 176690000 8083100 183330000 118620000 145020000 128040000 82144000 84513000 88117000 118610000 19 19 10 19 19 19 19 19 19 19 19 49108000 76623000 657900 75895000 40561000 70699000 50014000 35949000 35896000 39540000 52878000 45724000 71495000 3839800 77399000 39122000 71563000 49800000 38412000 37738000 38469000 50484000 8 8 4 8 8 8 8 8 8 8 8 61053000 112770000 363080 103690000 83035000 70761000 77923000 41254000 43521000 51256000 71526000 56848000 105190000 4243300 105930000 79502000 73455000 78243000 43732000 46774000 49648000 68131000 11 11 6 11 11 11 11 11 11 11 11 19440000000 8462900000 10977000000 21804 1083 20043 113708;113709;113710;113711;113712;113713;113714;113715;113716;113717;113718;113719;113720;113721 137835;137836;137837;137838;137839;137840;137841;137842;137843;137844;137845;137846;137847;137848;137849;137850;137851;137852;137853 137847 19 YFDPANGK Unmodified 910.41848 0.418482 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 By MS/MS 5 0 1 1 44.564 44.688 2 0.012708 12511 20211116_3433_TMUAki_TMT10x_P_F5 77.318 55.811 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21805 653 20044 113722 137854 137854 1 YFDRVDENNPEYLR Unmodified 1828.838 0.83802663 938 P35611;P35611-2;P35611-4;P35611-6;P35611-3;P35611-5 ADD1 Alpha-adducin yes no 0 0 0 1 By MS/MS By MS/MS 3 0 2 1 1 47.408 47.221 3 0.012425 14908 20211116_3430_TMUAki_TMT10x_P_F3 56.397 48.422 2495700 4134800 82331 5084900 4120400 4286600 2803000 4469400 4259100 3757800 3957200 2324400 3861800 306400 5108400 3922700 4420300 2957100 4513600 4258500 3699400 3826700 2 2 2 2 2 2 2 2 2 2 2 1255500 2007400 55483 2752400 2819400 3355800 1839100 2420400 2308500 1933400 2105400 1169400 1875900 177700 2764300 2682100 3360400 1931300 2493500 2320700 1908300 2037300 1 1 1 1 1 1 1 1 1 1 1 1240300 2127400 26847 2332500 1301000 930830 963870 2049000 1950600 1824400 1851800 1155000 1985900 128700 2344100 1240700 1059800 1025900 2020100 1937800 1791100 1789400 1 1 1 1 1 1 1 1 1 1 1 147470000 73137000 74328000 21806 938 20045 113723;113724 137855 137855 1 YFDSGDYNMAK Oxidation (M) 1325.5234 0.52341736 1256;243 P56211;P56211-2;O43768;O43768-3;O43768-6;O43768-5;O43768-2;O43768-9;O43768-7;O43768-4 ARPP19;ENSA cAMP-regulated phosphoprotein 19;Alpha-endosulfine no no 0 0 1 0 By MS/MS 4 0 1 1 46.533 46.658 3 0.010214 13036 20211116_3431_TMUAki_TMT10x_P_F4 64.103 50.197 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21807 1256;243 20046 113725 137856 137856 193 1 YFDTVPVAAAMCVLK Oxidation (M) 1699.8314 0.83135004 1798 Q15393 SF3B3 Splicing factor 3B subunit 3 yes yes 0 0 1 0 By MS/MS By MS/MS 7.75 0.433 1 3 1 3 75.835 75.895 3 2.863E-05 24712 20211116_3436_TMUAki_TMT10x_P_F8 95.651 81.745 12271000 17829000 136560 16853000 11926000 19726000 12590000 12969000 12207000 12749000 15463000 11427000 16633000 582890 17304000 11461000 19767000 12724000 13521000 12551000 12460000 14816000 3 3 2 3 3 3 3 3 3 3 3 9929300 13326000 65217 13096000 8860800 17130000 9753600 10105000 9753800 9950900 12547000 9245700 12434000 312120 13437000 8522600 17044000 9846800 10624000 10022000 9724900 12017000 2 2 1 2 2 2 2 2 2 2 2 2341700 4503100 71347 3756400 3065600 2596400 2836400 2864100 2453200 2797700 2916000 2180900 4199100 270780 3867600 2938000 2722600 2877200 2896500 2528900 2735100 2798600 1 1 1 1 1 1 1 1 1 1 1 1266600000 881330000 385240000 21808 1798 20047 113726;113727;113728;113729 137857;137858;137859;137860;137861 137858 2422 5 YFFFDDGNGLK Unmodified 1321.5979 0.59790293 1285 P61009 SPCS3 Signal peptidase complex subunit 3 yes yes 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 1 3 77.236 77.257 2 2.1955E-14 27110 20211116_3446_TMUAki_TMT10x_S_F7 187.85 140.96 7042500 11309000 0 11442000 7481200 6963900 8526400 4089800 4141800 4773700 7381500 6555800 10553000 418240 11597000 7188500 7306000 8458300 4323700 4520400 4634000 7020400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7042500 11309000 0 11442000 7481200 6963900 8526400 4089800 4141800 4773700 7381500 6555800 10553000 418240 11597000 7188500 7306000 8458300 4323700 4520400 4634000 7020400 1 1 0 1 1 1 1 1 1 1 1 1154600000 0 1154600000 21809 1285 20048 113730;113731;113732;113733 137862;137863;137864 137864 3 YFGDIISVGQR Unmodified 1253.6404 0.64043645 2424 Q96CN7 ISOC1 Isochorismatase domain-containing protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 64.51 64.815 2 3.6087E-19 19623 20211116_3447_TMUAki_TMT10x_S_F8 234.26 204.09 24974000 42737000 121630 38532000 29483000 44684000 30329000 33422000 33620000 33516000 34284000 23253000 39862000 2090500 39698000 28288000 44888000 30822000 34553000 34082000 32729000 33052000 5 5 3 5 5 5 5 5 5 5 5 15142000 25164000 56704 22504000 19002000 33911000 20127000 20281000 20222000 19798000 20094000 14098000 23471000 1212100 23317000 18242000 33536000 20360000 21294000 20563000 19356000 19388000 3 3 2 3 3 3 3 3 3 3 3 9832300 17573000 64929 16028000 10482000 10773000 10202000 13141000 13398000 13718000 14189000 9155300 16392000 878410 16381000 10047000 11352000 10462000 13259000 13519000 13374000 13664000 2 2 1 2 2 2 2 2 2 2 2 2759700000 1705700000 1054000000 21810 2424 20049 113734;113735;113736;113737 137865;137866;137867;137868;137869 137869 5 YFGGTEDR Unmodified 943.40356 0.40356022 1859 Q16658 FSCN1 Fascin yes yes 0 0 0 0 By MS/MS By MS/MS 2.4 1.02 1 2 1 1 2 3 34.239 34.163 2 0.00045473 10801 20211116_3441_TMUAki_TMT10x_S_F3 153.73 114.18 5112300 9053000 10596 7960200 8727000 8419100 6916100 4782700 5487200 4749000 7152500 4759800 8443300 448250 8204800 8320600 8466800 7065800 5045200 5703900 4639500 6848200 5 5 2 5 5 5 5 5 5 5 5 2699000 4638900 7636.8 4159500 6090500 5992300 3660000 2592800 2975900 2584900 3837100 2512900 4326800 254690 4304600 5777700 5915200 3818400 2807500 3088000 2524800 3674900 2 2 1 2 2 2 2 2 2 2 2 2413300 4414100 2958.9 3800700 2636500 2426800 3256100 2189900 2511300 2164100 3315400 2246900 4116500 193560 3900100 2543000 2551700 3247400 2237800 2615900 2114700 3173400 3 3 1 3 3 3 3 3 3 3 3 272450000 97813000 174640000 21811 1859 20050 113738;113739;113740;113741;113742 137870;137871;137872;137873;137874 137874 5 YFGGTEDRLSCFAQTVSPAEK Unmodified 2362.09 0.089960579 1859 Q16658 FSCN1 Fascin yes yes 0 0 0 1 By MS/MS By MS/MS 6.67 0.471 2 4 3 3 63.174 63.547 3;4 9.0978E-35 20788 20211116_3435_TMUAki_TMT10x_P_F7 183.65 167.34 80775000 130750000 714280 124830000 108620000 110350000 81233000 83828000 68469000 71231000 95196000 75213000 121980000 7557600 127550000 103490000 112720000 83435000 86192000 71162000 70086000 91004000 11 11 8 11 11 11 11 11 11 11 11 52420000 82870000 400980 80043000 48448000 86346000 54955000 53739000 44959000 45981000 59958000 48810000 77316000 4469200 81951000 46630000 86842000 55093000 56051000 46708000 45227000 57375000 7 7 4 7 7 7 7 7 7 7 7 28354000 47881000 313300 44783000 60172000 24007000 26278000 30089000 23510000 25250000 35237000 26403000 44666000 3088400 45594000 56863000 25875000 28342000 30140000 24454000 24860000 33629000 4 4 4 4 4 4 4 4 4 4 4 7408900000 3625000000 3783900000 21812 1859 20051 113743;113744;113745;113746;113747;113748 137875;137876;137877;137878;137879;137880;137881;137882;137883;137884;137885 137878 11 YFHVVIAGPQDSPFEGGTFK Unmodified 2195.0688 0.068754852 1294 P61088 UBE2N Ubiquitin-conjugating enzyme E2 N yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 2.84 3 1 2 1 2 3 7 5 71.369 71.328 3;4 8.3756E-19 24689 20211116_3439_TMUAki_TMT10x_S_F1 156.67 139.99 83711000 143190000 835610 127560000 88659000 135300000 106400000 96066000 94765000 100900000 106810000 77946000 133560000 7193900 131350000 85483000 136480000 106640000 99798000 97344000 98342000 102660000 23 23 15 23 23 23 23 23 23 23 23 44038000 72864000 627830 64038000 41041000 83548000 51309000 52792000 50743000 53426000 54894000 41007000 67957000 4060400 66244000 39640000 83219000 51491000 55246000 51794000 52152000 52826000 13 13 10 13 13 13 13 13 13 13 13 39673000 70328000 207780 63517000 47617000 51752000 55088000 43275000 44022000 47471000 51911000 36939000 65598000 3133600 65103000 45843000 53256000 55145000 44552000 45549000 46190000 49833000 10 10 5 10 10 10 10 10 10 10 10 18510000000 11354000000 7156600000 21813 1294 20052 113749;113750;113751;113752;113753;113754;113755;113756;113757;113758;113759;113760 137886;137887;137888;137889;137890;137891;137892;137893;137894;137895;137896;137897;137898;137899;137900;137901;137902;137903;137904;137905;137906;137907;137908 137899 23 YFILPDSLPLDTLLVDVEPK Unmodified 2286.2399 0.23990251 1353 P62314 SNRPD1 Small nuclear ribonucleoprotein Sm D1 yes yes 0 0 0 0 By MS/MS By MS/MS 5 1.41 2 1 1 2 83.562 83.572 3 0.038446 28570 20211116_3442_TMUAki_TMT10x_S_F4 37.552 27.803 1939900 2679200 6715.4 2208900 1722700 2691400 2114600 1636300 1764100 1876700 1771200 1806300 2498200 40009 2293900 1662100 2688400 2113600 1724200 1810200 1822900 1708400 3 3 1 3 3 3 3 3 3 3 3 1053800 1154100 0 985020 497270 1596200 829390 609630 693510 670610 587770 981240 1076300 0 1026000 485160 1566200 819720 671440 707720 652440 570270 1 1 0 1 1 1 1 1 1 1 1 886070 1525000 6715.4 1223900 1225400 1095200 1285200 1026700 1070600 1206100 1183400 825070 1421900 40009 1267900 1176900 1122100 1293900 1052700 1102500 1170500 1138100 2 2 1 2 2 2 2 2 2 2 2 259240000 139270000 119970000 21814 1353 20053 113761;113762;113763 137909;137910;137911 137910 3 YFIRDEFLR Unmodified 1257.6506 0.6506072 1393 P63092;Q5JWF2;P63092-4;Q5JWF2-2;P63092-3;P63092-2 GNAS Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas yes no 0 0 0 1 By MS/MS By MS/MS 7.43 0.728 1 2 4 3 4 54.487 54.707 2;3 3.6544E-11 17654 20211116_3446_TMUAki_TMT10x_S_F7 230.06 190.28 34331000 53666000 31612 54680000 49385000 56575000 43968000 42954000 41392000 41949000 47516000 31964000 50080000 2885000 55739000 47206000 57212000 44802000 44330000 42439000 41011000 45647000 7 7 2 7 7 7 7 7 7 7 7 17599000 25625000 0 26803000 21508000 35269000 20328000 21908000 21380000 21568000 22933000 16386000 23915000 1447200 27387000 20589000 35107000 20714000 22939000 21760000 21078000 22074000 3 3 0 3 3 3 3 3 3 3 3 16732000 28041000 31612 27877000 27878000 21306000 23640000 21046000 20011000 20381000 24583000 15578000 26165000 1437800 28352000 26617000 22105000 24088000 21391000 20679000 19933000 23573000 4 4 2 4 4 4 4 4 4 4 4 8147500000 4024800000 4122700000 21815 1393 20054 113764;113765;113766;113767;113768;113769;113770 137912;137913;137914;137915;137916;137917;137918;137919 137917 8 YFLHDDRDDGVDYWAK Unmodified 2013.8857 0.88570511 3018 Q9NYF8;Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 yes no 0 0 0 1 By matching By MS/MS 3.67 0.471 1 2 2 1 58.963 58.893 4 0.006223 18515 20211116_3442_TMUAki_TMT10x_S_F4 59.261 50.552 2074400 3404800 46236 3631400 2410300 1650900 1719200 2280500 2352800 2232400 2725200 1931800 3177900 219780 3659000 2296500 1818100 1799600 2285400 2379000 2182200 2617300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2074400 3404800 46236 3631400 2410300 1650900 1719200 2280500 2352800 2232400 2725200 1931800 3177900 219780 3659000 2296500 1818100 1799600 2285400 2379000 2182200 2617300 1 1 1 1 1 1 1 1 1 1 1 561780000 337370000 224410000 21816 3018 20055 113771;113772;113773 137920 137920 1 YFLQATHVQPDDIGAHMNVGR Oxidation (M) 2384.1332 0.1331628 2038 Q6ZXV5;Q6ZXV5-2 TMTC3 Transmembrane and TPR repeat-containing protein 3 yes no 0 0 1 0 By MS/MS 7 0 1 1 46.631 47.121 4 0.0021126 14658 20211116_3446_TMUAki_TMT10x_S_F7 58.712 47.924 2061000 3637500 28184 3625800 2057000 1944000 1590500 2942700 2545700 2224800 2919200 1919200 3394100 197080 3674600 1962300 2106600 1667300 2920100 2561300 2202500 2804500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2061000 3637500 28184 3625800 2057000 1944000 1590500 2942700 2545700 2224800 2919200 1919200 3394100 197080 3674600 1962300 2106600 1667300 2920100 2561300 2202500 2804500 1 1 1 1 1 1 1 1 1 1 1 235280000 0 235280000 21817 2038 20056 113774 137921 137921 2558 1 YFLVGAGAIGCELLK Unmodified 1609.8538 0.85380004 769 P22314;P22314-2 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.6 2.24 4 4 2 5 5 79.496 79.468 2;3 6.1984E-24 27533 20211116_3429_TMUAki_TMT10x_P_F2 193.96 176.16 87800000 152930000 153330 125780000 106820000 150650000 115420000 94426000 81180000 101400000 106810000 81747000 142600000 7140100 130610000 102620000 150680000 115560000 99052000 84994000 98748000 102240000 10 10 3 10 10 10 10 10 10 10 10 51535000 85285000 121250 71790000 56017000 105580000 66468000 55648000 47135000 58038000 61004000 47982000 79530000 4071000 74696000 53958000 104350000 66277000 59170000 49290000 56585000 58419000 5 5 2 5 5 5 5 5 5 5 5 36264000 67641000 32085 53994000 50805000 45070000 48949000 38779000 34045000 43364000 45806000 33764000 63065000 3069100 55913000 48658000 46324000 49286000 39882000 35704000 42163000 43824000 5 5 1 5 5 5 5 5 5 5 5 10657000000 6352900000 4303700000 21818 769 20057 113775;113776;113777;113778;113779;113780;113781;113782;113783;113784 137922;137923;137924;137925;137926;137927;137928;137929;137930;137931;137932;137933 137923 12 YFNSYTLTGR Unmodified 1220.5826 0.58258722 2501 Q96IX5 USMG5 Up-regulated during skeletal muscle growth protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 53.3 53.029 2 1.1327E-08 16819 20211116_3429_TMUAki_TMT10x_P_F2 174.8 155.7 4419300 7561300 26127 7898400 6795000 7530600 5172000 6926700 6713800 5618100 6428800 4114800 7056700 408050 8028300 6475100 7680800 5378700 7033900 6752600 5540800 6210500 2 2 1 2 2 2 2 2 2 2 2 2143500 3611000 26127 3777700 4446100 5310400 3157100 3077200 3019600 2553600 3140200 1996000 3370100 234310 3865000 4232400 5265100 3265600 3225700 3082300 2515600 3025500 1 1 1 1 1 1 1 1 1 1 1 2275800 3950200 0 4120700 2348900 2220200 2014800 3849500 3694200 3064400 3288600 2118800 3686600 173740 4163300 2242800 2415600 2113200 3808200 3670300 3025200 3185000 1 1 0 1 1 1 1 1 1 1 1 548630000 239670000 308960000 21819 2501 20058 113785;113786 137934;137935 137934 2 YFPSSLSPVTPSESLPRPR Unmodified 2116.0953 0.095303954 3054 Q9P0U4;Q9P0U4-2 CXXC1 CXXC-type zinc finger protein 1 yes no 0 0 0 1 By MS/MS 2 0 1 1 59.522 59.29 3 2.1661E-15 18113 20211116_3440_TMUAki_TMT10x_S_F2 127.83 116.36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21820 3054 20059 113787 137936 137936 1 YFPTQALNFAFK Unmodified 1445.7343 0.73433683 639;502;638 P05141;Q9H0C2;P12235;P12236 SLC25A5;SLC25A31;SLC25A4;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS 4.38 0.696 1 3 4 5 3 78.724 78.73 2;3 1.7799E-30 26563 20211116_3442_TMUAki_TMT10x_S_F4 266.17 215.36 68215000 114240000 251700 120690000 57702000 88387000 78184000 41424000 46972000 55487000 74465000 63511000 106630000 5014000 122190000 55810000 90980000 77268000 44908000 50127000 53612000 70982000 7 7 4 7 7 7 7 7 7 7 7 35927000 58186000 119800 60651000 35131000 57640000 37675000 21288000 23901000 29125000 36951000 33446000 54303000 2350300 61655000 33709000 58089000 37656000 23713000 25381000 28122000 35242000 4 4 1 4 4 4 4 4 4 4 4 32288000 56058000 131910 60040000 22571000 30747000 40509000 20136000 23071000 26362000 37513000 30065000 52323000 2663800 60532000 22101000 32891000 39612000 21195000 24746000 25490000 35741000 3 3 3 3 3 3 3 3 3 3 3 7686700000 4099400000 3587400000 21821 502;638;639 20060 113788;113789;113790;113791;113792;113793;113794;113795 137937;137938;137939;137940;137941;137942;137943;137944 137942 8 YFPTQALNFAFKDK Unmodified 1688.8562 0.85624288 639;502;638 P05141;Q9H0C2;P12235;P12236 SLC25A5;SLC25A31;SLC25A4;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 0 0 0 1 By MS/MS 3 0 1 1 75.446 75.307 3 1.5838E-06 26347 20211116_3430_TMUAki_TMT10x_P_F3 94.007 66.978 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21822 502;638;639 20061 113796 137945 137945 1 YFPTQALNFAFKDKYK Unmodified 1980.0145 0.014534437 639;502;638 P05141;Q9H0C2;P12235;P12236 SLC25A5;SLC25A31;SLC25A4;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 0 0 0 2 By MS/MS 6 0 1 1 69.759 69.713 4 3.2128E-07 21553 20211116_3434_TMUAki_TMT10x_P_F6 110.38 100.97 12557000 22682000 131520 18159000 17256000 31156000 20985000 19988000 15089000 17886000 17307000 11692000 21148000 1149300 19039000 16642000 30687000 20908000 20823000 15687000 17555000 16627000 2 2 1 2 2 2 2 2 2 2 2 12557000 22682000 131520 18159000 17256000 31156000 20985000 19988000 15089000 17886000 17307000 11692000 21148000 1149300 19039000 16642000 30687000 20908000 20823000 15687000 17555000 16627000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 919580000 919580000 0 21823 502;638;639 20062 113797 137946;137947 137946 2 YFPYYGK Unmodified 936.43815 0.43815481 1225 P54709 ATP1B3 Sodium/potassium-transporting ATPase subunit beta-3 yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 57.128 56.892 2 0.005781 18391 20211116_3429_TMUAki_TMT10x_P_F2 106.75 85.242 8610100 14140000 14018 16533000 12269000 13520000 9224400 10503000 11529000 10034000 11211000 8016600 13203000 739880 16653000 11686000 13892000 9587200 10817000 11616000 9818900 10824000 2 2 1 2 2 2 2 2 2 2 2 4384900 6927700 14018 8142500 8733600 9864500 5786700 5299000 5739600 5124700 5647700 4082900 6468800 437510 8246600 8300900 9840500 6022300 5612800 5837800 5012300 5450900 1 1 1 1 1 1 1 1 1 1 1 4225200 7212500 0 8390800 3535100 3655900 3437700 5203900 5789000 4909100 5563000 3933700 6734400 302370 8406000 3384600 4051200 3564900 5204000 5778400 4806600 5373400 1 1 0 1 1 1 1 1 1 1 1 605230000 359740000 245490000 21824 1225 20063 113798;113799 137948;137949 137948 2 YFQFQEEGKEGENR Unmodified 1759.7802 0.7801774 168 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 0 0 0 1 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 44.672 44.797 3 1.2139E-23 12279 20211116_3431_TMUAki_TMT10x_P_F4 190.82 176.03 12453000 18923000 47626 23268000 24283000 23547000 14731000 18122000 18541000 15165000 17208000 11595000 17673000 1171500 23435000 23042000 23849000 15559000 18610000 18648000 14933000 16641000 5 5 2 5 5 5 5 5 5 5 5 8281300 12582000 25471 15732000 20687000 20509000 11716000 12054000 12268000 10143000 11365000 7710400 11752000 827500 15898000 19608000 20408000 12371000 12625000 12425000 9984800 10992000 3 3 1 3 3 3 3 3 3 3 3 4171900 6341000 22155 7536700 3595900 3038600 3014200 6067300 6272800 5022000 5842800 3884500 5921300 343990 7536900 3433700 3441000 3188800 5984700 6223700 4947900 5649600 2 2 1 2 2 2 2 2 2 2 2 2340900000 1636900000 704050000 21825 168 20064 113800;113801;113802;113803;113804 137950;137951;137952;137953;137954 137951 5 YFQHLLGK Unmodified 1004.5444 0.54435122 3301 Q9Y4L1;Q9Y4L1-2 HYOU1 Hypoxia up-regulated protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 54.754 54.474 3 0.016341 18980 20211116_3441_TMUAki_TMT10x_S_F3 64.265 42.178 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21826 3301 20065 113805;113806 137955;137956 137956 2 YFQIGTIVDNPADFYHSR Unmodified 2142.0171 0.017053633 1924 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 2 3 72.859 72.91 3 8.7855E-18 23490 20211116_3436_TMUAki_TMT10x_P_F8 154.49 147.22 11905000 21014000 368990 17593000 12896000 24743000 15616000 14840000 14782000 15806000 16039000 11087000 19596000 1269400 18296000 12451000 24543000 15672000 15617000 15119000 15397000 15434000 5 5 3 5 5 5 5 5 5 5 5 10015000 17276000 282720 14425000 9948500 22256000 12890000 12315000 12748000 13515000 13223000 9326300 16110000 1017400 15034000 9625300 21967000 12917000 13059000 12992000 13150000 12741000 4 4 2 4 4 4 4 4 4 4 4 1890700 3737800 86271 3168500 2947500 2486500 2726000 2524800 2033500 2290800 2816900 1761000 3485700 251950 3262400 2825900 2576000 2755200 2558100 2126800 2246900 2693100 1 1 1 1 1 1 1 1 1 1 1 2244500000 1768500000 475970000 21827 1924 20066 113807;113808;113809;113810;113811 137957;137958;137959;137960;137961;137962;137963 137959 7 YFQINQDEEEEEDED Unmodified 1930.7228 0.72284126 931 P35268 RPL22 60S ribosomal protein L22 yes yes 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 4 2 3 3 63.176 63 2;3 6.4726E-10 19285 20211116_3428_TMUAki_TMT10x_P_F1 137.95 132.45 20126000 32966000 304560 34982000 19403000 30695000 19227000 25396000 25265000 23886000 26138000 18741000 30769000 1773800 35481000 18613000 31416000 19698000 26043000 25469000 23390000 25188000 10 10 5 10 10 10 10 10 10 10 10 11628000 17190000 273660 17891000 11103000 22058000 12611000 12783000 12499000 12201000 13343000 10829000 16043000 1202200 18264000 10700000 22006000 12710000 13447000 12751000 11940000 12846000 4 4 3 4 4 4 4 4 4 4 4 8497900 15776000 30897 17091000 8299800 8637200 6615500 12613000 12765000 11685000 12795000 7912000 14726000 571610 17217000 7912700 9409800 6988800 12596000 12719000 11451000 12342000 6 6 2 6 6 6 6 6 6 6 6 7169800000 4011300000 3158500000 21828 931 20067 113812;113813;113814;113815;113816;113817 137964;137965;137966;137967;137968;137969;137970;137971;137972;137973 137964 10 YFSLIPTGFADEDINKR Unmodified 1984.9894 0.9894419 2859 Q9HBU6 ETNK1 Ethanolamine kinase 1 yes yes 0 0 0 1 By MS/MS 7.5 0.5 1 1 2 75.031 75.116 3 3.4128E-05 25748 20211116_3435_TMUAki_TMT10x_P_F7 82.837 72.737 7413600 11958000 169160 11288000 6908800 12932000 7718800 7665900 7251100 7388000 8516600 6904000 11155000 765220 11587000 6655100 12955000 7772700 8051700 7442100 7227000 8176400 2 2 2 2 2 2 2 2 2 2 2 7413600 11958000 169160 11288000 6908800 12932000 7718800 7665900 7251100 7388000 8516600 6904000 11155000 765220 11587000 6655100 12955000 7772700 8051700 7442100 7227000 8176400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1299500000 1299500000 0 21829 2859 20068 113818;113819 137974;137975 137975 2 YFSLPFCVGSKK Unmodified 1431.7221 0.72205759 2876 Q9HD45 TM9SF3 Transmembrane 9 superfamily member 3 yes yes 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 67.46 67.414 3 0.0037703 20970 20211116_3445_TMUAki_TMT10x_S_F6 64.534 44.956 21496000 36563000 138660 36379000 29888000 38394000 25959000 25655000 23109000 23429000 28550000 20016000 34116000 2029000 37156000 28568000 38702000 26449000 26660000 23827000 22974000 27373000 2 2 2 2 2 2 2 2 2 2 2 12413000 21607000 38482 21849000 17413000 29198000 16686000 15007000 13909000 13619000 16866000 11558000 20163000 1135000 22383000 16681000 28973000 16878000 15933000 14376000 13359000 16178000 1 1 1 1 1 1 1 1 1 1 1 9083600 14955000 100180 14530000 12475000 9195500 9272900 10648000 9200000 9809900 11685000 8458500 13953000 893960 14773000 11887000 9729500 9571100 10728000 9450800 9615400 11195000 1 1 1 1 1 1 1 1 1 1 1 1461500000 858040000 603470000 21830 2876 20069 113820;113821 137976 137976 1 YFSNRPGPTPGCQLPRPNCPVETLK Unmodified 2884.4113 0.41125191 1142 P50613 CDK7 Cyclin-dependent kinase 7 yes yes 0 0 0 2 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 49.489 49.396 4 2.0354E-22 16818 20211116_3441_TMUAki_TMT10x_S_F3 147.17 128.61 8105300 13782000 36598 14750000 9162100 12096000 8750800 7999500 7699600 8402700 10044000 7546800 12863000 686030 14939000 8774700 12394000 8865300 8352100 7962200 8189900 9616300 4 4 2 4 4 4 4 4 4 4 4 4024200 6728000 0 7133700 5455800 8290400 5152200 4008000 3877400 4287400 4938200 3746700 6279500 318820 7266200 5221400 8278100 5202500 4299500 4038000 4175800 4730900 2 2 0 2 2 2 2 2 2 2 2 4081100 7053500 36598 7616100 3706300 3805500 3598600 3991500 3822200 4115200 5105600 3800200 6583800 367210 7673000 3553300 4116000 3662800 4052600 3924200 4014000 4885400 2 2 2 2 2 2 2 2 2 2 2 889740000 359030000 530720000 21831 1142 20070 113822;113823;113824 137977;137978;137979;137980 137979 4 YFTCDEGHGIFVR Unmodified 1599.714 0.71401209 1694 Q14203;Q14203-6;Q14203-3;Q14203-4 DCTN1 Dynactin subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 50.449 50.603 3 4.4845E-12 14868 20211116_3433_TMUAki_TMT10x_P_F5 153.75 141.37 18278000 29138000 275940 34399000 26030000 26372000 18618000 22299000 21997000 20629000 23408000 17021000 27208000 1863900 34601000 24788000 27270000 19377000 22827000 22280000 20216000 22537000 6 6 5 6 6 6 6 6 6 6 6 8388200 13077000 204680 15486000 16838000 18612000 10609000 10269000 10120000 9595800 10707000 7811800 12211000 1004500 15675000 16001000 18580000 11072000 10842000 10338000 9399500 10311000 3 3 3 3 3 3 3 3 3 3 3 9890000 16061000 71260 18913000 9192400 7760800 8009200 12029000 11876000 11033000 12700000 9208900 14997000 859320 18926000 8787500 8690000 8305600 11985000 11942000 10816000 12226000 3 3 2 3 3 3 3 3 3 3 3 883830000 418150000 465680000 21832 1694 20071 113825;113826;113827;113828 137981;137982;137983;137984;137985;137986 137981 6 YFTLGLPTGSTPLGCYKK Unmodified 2002.0234 0.023384564 1058 P46926;P46926-2;Q8TDQ7;Q8TDQ7-3;Q8TDQ7-2 GNPDA1;GNPDA2 Glucosamine-6-phosphate isomerase 1;Glucosamine-6-phosphate isomerase 2 yes no 0 0 0 1 By MS/MS 6 0 1 1 72.207 72.117 3 8.2436E-12 22960 20211116_3445_TMUAki_TMT10x_S_F6 123.97 109.27 9103900 14558000 210190 15208000 8476700 10360000 10832000 7102500 5659700 8267900 10362000 8478200 13586000 941880 15396000 8199800 10780000 10704000 7420600 6151000 8026900 9850500 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9103900 14558000 210190 15208000 8476700 10360000 10832000 7102500 5659700 8267900 10362000 8478200 13586000 941880 15396000 8199800 10780000 10704000 7420600 6151000 8026900 9850500 2 2 2 2 2 2 2 2 2 2 2 871150000 0 871150000 21833 1058 20072 113829 137987;137988 137988 2 YFTWDPSRFPQPR Unmodified 1695.8158 0.81577505 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 1 By MS/MS By MS/MS 3.43 0.904 1 3 2 1 4 3 63.973 63.826 3 1.5298E-12 21768 20211116_3430_TMUAki_TMT10x_P_F3 130.69 112.59 36934000 55271000 93109 58047000 43667000 41966000 41926000 27757000 25542000 28868000 41362000 34386000 51585000 2752300 58781000 41800000 43424000 42111000 28971000 27263000 28148000 39411000 7 7 4 7 7 7 7 7 7 7 7 16581000 22121000 0 22332000 15336000 22853000 18540000 10806000 10431000 11801000 16413000 15435000 20642000 917170 22775000 14757000 22978000 18387000 11624000 11178000 11485000 15648000 2 2 0 2 2 2 2 2 2 2 2 20353000 33150000 93109 35715000 28331000 19112000 23387000 16951000 15111000 17066000 24950000 18951000 30942000 1835100 36006000 27043000 20446000 23724000 17347000 16084000 16663000 23763000 5 5 4 5 5 5 5 5 5 5 5 5113600000 2086100000 3027500000 21834 1730 20073 113830;113831;113832;113833;113834;113835;113836 137989;137990;137991;137992;137993;137994;137995;137996;137997 137991 9 YFVEAGAMAVR Oxidation (M) 1228.591 0.59104341 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 1 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 47.327 47.607 2 4.5937E-06 14784 20211116_3446_TMUAki_TMT10x_S_F7 123.21 89.119 14555000 24559000 48212 24448000 21787000 28770000 16750000 23956000 21937000 21627000 21751000 13552000 22916000 1194900 25013000 20757000 28935000 17415000 24530000 22083000 21218000 20988000 6 6 2 6 6 6 6 6 6 6 6 8640100 13897000 0 14005000 16289000 22646000 11410000 13414000 11882000 12169000 12497000 8043900 12968000 712010 14409000 15488000 22329000 11843000 14067000 12089000 11936000 12037000 3 3 0 3 3 3 3 3 3 3 3 5915300 10662000 48212 10443000 5498600 6124800 5340700 10542000 10055000 9458700 9254000 5507800 9948200 482910 10604000 5268200 6605100 5571500 10463000 9994600 9282500 8951800 3 3 2 3 3 3 3 3 3 3 3 4251700000 2536500000 1715200000 21835 712 20074 113837;113838;113839;113840;113841;113842 137998;137999;138000;138001;138002;138003 138003 815 6 YFVEAGAMAVR Unmodified 1212.5961 0.59612879 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 By MS/MS By MS/MS 7.33 0.745 1 2 3 3 3 55.831 56.153 2 2.5436E-05 18284 20211116_3446_TMUAki_TMT10x_S_F7 107.56 84.007 80965000 137050000 806950 144930000 95563000 105090000 91598000 68079000 63347000 75657000 96433000 75392000 127910000 7669000 146700000 91579000 108680000 92244000 71313000 66855000 73578000 92001000 7 7 7 7 7 7 7 7 7 7 7 37236000 63767000 75238 66692000 52969000 68216000 48407000 28094000 27895000 33930000 42549000 34671000 59512000 3377600 67853000 50679000 68499000 48705000 30764000 29796000 32898000 40591000 2 2 2 2 2 2 2 2 2 2 2 43729000 73278000 731710 78241000 42594000 36871000 43191000 39985000 35453000 41727000 53885000 40721000 68395000 4291500 78850000 40900000 40183000 43539000 40549000 37059000 40681000 51410000 5 5 5 5 5 5 5 5 5 5 5 3477700000 1260800000 2216900000 21836 712 20074 113843;113844;113845;113846;113847;113848 138004;138005;138006;138007;138008;138009;138010;138011;138012 138011 9 YFVEAGAMAVRR Oxidation (M) 1384.6922 0.69215444 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 1 1 By MS/MS By MS/MS 1.4 0.49 3 2 2 3 39.98 39.896 3 0.0024028 11578 20211116_3429_TMUAki_TMT10x_P_F2 65.395 48.07 3772400 5748600 71706 6491900 7281300 7658000 4244900 5601400 5147800 4464200 5555400 3512900 5366800 414480 6587700 6908700 7683300 4492500 5764800 5212000 4406800 5346500 5 5 4 5 5 5 5 5 5 5 5 2902600 4326000 51879 4883300 6429500 6892500 3498000 4308600 3866100 3330400 4252400 2702800 4038700 324140 4972500 6093400 6839600 3712900 4481900 3930700 3292900 4090200 3 3 2 3 3 3 3 3 3 3 3 869840 1422600 19827 1608500 851790 765450 746900 1292700 1281700 1133800 1303000 810060 1328100 90341 1615200 815300 843650 779650 1283000 1281300 1113900 1256300 2 2 2 2 2 2 2 2 2 2 2 303210000 191060000 112150000 21837 712 20075 113849;113850;113851;113852;113853 138013;138014;138015;138016;138017;138018 138015 815 6 YFVEAGAMAVRR Unmodified 1368.6972 0.69723982 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 1 By MS/MS 2 0 1 1 46.251 46.197 3 0.012413 12723 20211116_3440_TMUAki_TMT10x_S_F2 62.089 53.131 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21838 712 20075 113854 138019 138019 1 YFVISNTTGYNDR Unmodified 1548.7209 0.72087161 1093 P49354;P49354-2 FNTA Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha yes no 0 0 0 0 By MS/MS By MS/MS 8 0 3 2 1 54.918 54.973 2 2.5356E-74 15605 20211116_3447_TMUAki_TMT10x_S_F8 301.11 285.48 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21839 1093 20076 113855;113856;113857 138020;138021;138022 138022 3 YGAAMALGICCAGTGNK Unmodified 1713.7637 0.76368118 2575 Q99460;Q99460-2 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 59.786 59.655 3 8.1668E-05 18223 20211116_3440_TMUAki_TMT10x_S_F2 79.652 67.486 20449000 33626000 440780 33216000 36051000 45357000 31262000 17384000 17112000 18485000 27600000 19043000 31375000 2324600 34097000 34474000 44829000 31523000 19120000 18400000 18008000 26300000 2 2 2 2 2 2 2 2 2 2 2 20449000 33626000 440780 33216000 36051000 45357000 31262000 17384000 17112000 18485000 27600000 19043000 31375000 2324600 34097000 34474000 44829000 31523000 19120000 18400000 18008000 26300000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1078200000 1078200000 0 21840 2575 20077 113858;113859;113860 138023;138024;138025 138025 3 YGAAMALGICCAGTGNK Oxidation (M) 1729.7586 0.7585958 2575 Q99460;Q99460-2 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 0 0 1 0 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 51.9 51.837 3 1.6819E-05 14920 20211116_3436_TMUAki_TMT10x_P_F8 87.566 76.191 10148000 15980000 349210 15415000 10811000 12012000 8447100 10923000 9175600 9972900 12815000 9451500 14909000 1176100 15715000 10327000 12422000 8714400 11132000 9431800 9779300 12250000 3 3 3 3 3 3 3 3 3 3 3 4211800 5620800 39492 5686900 5623600 6942700 3900200 4325200 4011500 3817500 5319900 3921900 5245100 405760 5815700 5351200 6936500 4049700 4514500 4122600 3749300 5091400 1 1 1 1 1 1 1 1 1 1 1 5936400 10359000 309720 9728200 5187000 5068800 4546900 6597900 5164100 6155400 7495300 5529600 9663500 770320 9899200 4976200 5485500 4664700 6617900 5309300 6029900 7158300 2 2 2 2 2 2 2 2 2 2 2 669660000 559070000 110590000 21841 2575 20077 113861;113862;113863 138026;138027;138028 138026 2811 3 YGAFVKPAVVTVGDFPEEDYGLDEI Unmodified 2729.3112 0.31122955 2570 Q99426;Q99426-2 TBCB Tubulin-folding cofactor B yes no 0 0 0 1 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 80.174 80.145 3 1.2495E-07 26757 20211116_3431_TMUAki_TMT10x_P_F4 85.35 82.297 11151000 17090000 151940 15458000 10328000 16667000 12767000 9265700 9143500 10144000 12749000 10383000 15941000 986640 15903000 9969200 16738000 12710000 9820500 9588400 9870600 12187000 6 6 3 6 6 6 6 6 6 6 6 8800700 12824000 31369 11522000 7093800 13548000 9079400 6740900 6898200 7662400 9475200 8194000 11962000 667060 11877000 6849200 13524000 9038300 7224800 7204600 7445500 9060600 4 4 1 4 4 4 4 4 4 4 4 2349900 4265800 120570 3935400 3234400 3118800 3687300 2524800 2245300 2481200 3273800 2188900 3979200 319580 4025800 3120000 3214200 3671900 2595700 2383800 2425000 3126300 2 2 2 2 2 2 2 2 2 2 2 4540000000 3445300000 1094700000 21842 2570 20078 113864;113865;113866;113867;113868;113869 138029;138030;138031;138032;138033;138034;138035 138031 7 YGAHNYHPLPVALER Unmodified 1735.8794 0.87943794 484 P04181 OAT Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form yes yes 0 0 0 0 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 37.317 37.185 4 0.0012259 8656 20211116_3440_TMUAki_TMT10x_S_F2 65.092 44.429 2393900 3387300 67129 3933600 3806200 3245400 2549000 2630200 2738700 2125000 3602500 2229400 3162700 280810 3964100 3622100 3334800 2657200 2690200 2808500 2096200 3448500 4 4 4 4 4 4 4 4 4 4 4 1578000 2082500 52422 2359100 3070100 2507300 1781200 1658300 1716800 1325900 2371000 1469700 1944300 200580 2389300 2914500 2526100 1872200 1718900 1772600 1308600 2267000 2 2 2 2 2 2 2 2 2 2 2 815840 1304700 14708 1574600 736140 738070 767770 971920 1021900 799060 1231500 759740 1218500 80230 1574700 707540 808750 784990 971210 1035900 787530 1181500 2 2 2 2 2 2 2 2 2 2 2 71615000 44864000 26751000 21843 484 20079 113870;113871;113872 138036;138037;138038;138039 138038 4 YGAIRDIDLK Unmodified 1162.6346 0.63462279 1543 Q07955;Q07955-3;Q07955-2 SRSF1 Serine/arginine-rich splicing factor 1 yes no 0 0 0 1 By MS/MS By MS/MS 6 0.756 2 3 2 4 3 48.69 48.998 2;3 6.0721E-05 14168 20211116_3433_TMUAki_TMT10x_P_F5 93.561 44.563 30763000 42789000 102310 57771000 63808000 41539000 30169000 50769000 52600000 36721000 46710000 28643000 39983000 2981200 57635000 60334000 43526000 33055000 50732000 52321000 36442000 45241000 6 6 4 6 6 6 6 6 6 6 6 12367000 14987000 5995.8 21508000 43177000 28361000 15766000 19887000 20273000 13234000 16099000 11514000 14008000 1339900 21583000 40703000 28279000 17565000 20448000 20279000 13199000 15660000 2 2 1 2 2 2 2 2 2 2 2 18396000 27803000 96314 36263000 20631000 13178000 14403000 30882000 32327000 23487000 30610000 17130000 25975000 1641400 36052000 19631000 15247000 15490000 30284000 32042000 23244000 29582000 4 4 3 4 4 4 4 4 4 4 4 3636300000 1415000000 2221300000 21844 1543 20080 113873;113874;113875;113876;113877;113878;113879 138040;138041;138042;138043;138044;138045;138046;138047 138040 8 YGALALQEIFDGIQPK Unmodified 1761.9301 0.93013611 1234 P55060;P55060-3;P55060-4 CSE1L Exportin-2 yes no 0 0 0 0 By MS/MS 8 0 1 1 80.588 80.58 3 0.00013558 26030 20211116_3447_TMUAki_TMT10x_S_F8 78.069 60.269 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21845 1234 20081 113880 138048 138048 1 YGALVICETSEQK Unmodified 1496.7181 0.71809442 1033 P43897;P43897-2 TSFM Elongation factor Ts, mitochondrial yes no 0 0 0 0 By MS/MS 5 0 1 1 55.036 55.235 3 0.0739 16768 20211116_3433_TMUAki_TMT10x_P_F5 39.219 23.081 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21846 1033 20082 113881 138049 138049 1 YGASLRK Unmodified 793.44464 0.44463717 1313 P61513 RPL37A 60S ribosomal protein L37a yes yes 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 31.139 31.163 3 0.063718 6458 20211116_3428_TMUAki_TMT10x_P_F1 51.572 37.578 1802600 3026700 3763.5 2550300 2098500 2196100 1937300 1338700 1540100 1393900 2152800 1678300 2822400 140300 2630100 2007200 2239900 1961200 1406000 1605900 1359000 2057800 2 2 1 2 2 2 2 2 2 2 2 836090 1386700 3763.5 1105100 1109600 1420200 903170 621050 691990 632870 1009800 778510 1292800 76655 1152000 1059000 1409400 920380 672120 724500 617610 964280 1 1 1 1 1 1 1 1 1 1 1 966550 1640000 0 1445200 988900 775960 1034100 717660 848130 760990 1143000 899820 1529600 63646 1478100 948250 830460 1040900 733910 881430 741440 1093500 1 1 0 1 1 1 1 1 1 1 1 74008000 48150000 25858000 21847 1313 20083 113882;113883 138050;138051 138050 2 YGCLAGVR Unmodified 894.43817 0.43817159 3056 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 36.378 36.684 2 0.0023834 10005 20211116_3435_TMUAki_TMT10x_P_F7 110.23 82.745 2267800 3736100 11428 3665400 4478400 4187200 2612800 2617500 2554000 2249900 2986900 2111600 3485900 225860 3752100 4247600 4198200 2746000 2729500 2616200 2212500 2868000 5 5 3 5 5 5 5 5 5 5 5 1719400 2755700 4421 2732100 3826000 3664200 2041600 1798600 1813300 1617100 2126600 1600900 2571300 172400 2802800 3623700 3633400 2157100 1917400 1865900 1586900 2041700 4 4 2 4 4 4 4 4 4 4 4 548430 980370 7007.2 933290 652400 523070 571220 818910 740660 632720 860340 510700 914610 53455 949300 623940 564820 588900 812110 750320 625620 826240 1 1 1 1 1 1 1 1 1 1 1 77238000 63215000 14023000 21848 3056 20084 113884;113885;113886;113887 138052;138053;138054;138055 138052 4 YGDFFIR Unmodified 916.4443 0.44430282 3224 Q9Y262;Q9Y262-2 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 0 0 0 0 By MS/MS 7 0 1 1 59.043 59.775 2 0.070421 19262 20211116_3435_TMUAki_TMT10x_P_F7 63.306 28.106 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21849 3224 20085 113888 138056 138056 1 YGDFRADDADEFGYSR Unmodified 1882.7758 0.77582031 2048 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 50.553 50.456 3 3.988E-21 15015 20211116_3442_TMUAki_TMT10x_S_F4 165.44 161.2 54420000 79192000 487670 110530000 64763000 65099000 54099000 46396000 48453000 46021000 61824000 50671000 74012000 4840700 109870000 61842000 68701000 55257000 48105000 50015000 44962000 59225000 8 8 5 8 8 8 8 8 8 8 8 28905000 41668000 398500 57934000 46818000 50850000 37565000 25710000 24915000 24329000 32815000 26915000 38941000 2922600 57847000 44677000 51675000 38196000 27368000 26181000 23817000 31410000 5 5 4 5 5 5 5 5 5 5 5 25515000 37524000 89166 52599000 17945000 14248000 16533000 20686000 23538000 21693000 29009000 23756000 35070000 1918000 52021000 17165000 17026000 17061000 20737000 23834000 21145000 27815000 3 3 1 3 3 3 3 3 3 3 3 4112900000 2558700000 1554200000 21850 2048 20086 113889;113890;113891;113892;113893;113894 138057;138058;138059;138060;138061;138062;138063;138064 138064 8 YGDGGSTFQSTTGHCVHMR Oxidation (M) 2112.8742 0.87417092 894 P31943 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes yes 0 0 1 0 By MS/MS 4.5 0.5 2 2 4 29.343 29.327 3;4 1.2341E-17 6418 20211116_3433_TMUAki_TMT10x_P_F5 145.48 141.5 292500 419440 1469.3 654740 922570 851340 362430 270440 361890 251540 376440 272340 392260 18769 654260 870470 842110 396900 303710 368710 246440 362690 4 4 1 4 4 4 4 4 4 4 4 292500 419440 1469.3 654740 922570 851340 362430 270440 361890 251540 376440 272340 392260 18769 654260 870470 842110 396900 303710 368710 246440 362690 4 4 1 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 166810000 166810000 0 21851 894 20087 113895;113896;113897;113898 138065;138066;138067;138068 138068 1096 4 YGDSEFTVQSTTGHCVHMR Oxidation (M) 2226.9423 0.94225048 1181 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 0 0 1 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 32.832 32.816 3;4 2.2573E-08 7522 20211116_3431_TMUAki_TMT10x_P_F4 105.9 100.19 663170 931800 1224.8 1210800 1254100 1360600 711740 656000 785850 632190 878270 617330 870510 45531 1217700 1187700 1361000 752600 701820 799500 618410 844370 5 5 1 5 5 5 5 5 5 5 5 473120 619860 0 835630 1080800 1201300 541520 435060 575500 444040 615940 440390 579200 31055 842710 1021700 1184000 578540 481280 585420 433310 592920 2 2 0 2 2 2 2 2 2 2 2 190050 311940 1224.8 375160 173290 159310 170210 220940 210350 188150 262330 176950 291310 14476 375030 166020 176990 174060 220550 214080 185110 251450 3 3 1 3 3 3 3 3 3 3 3 265370000 232190000 33175000 21852 1181 20088 113899;113900;113901;113902;113903 138069;138070;138071;138072;138073 138069 1593 5 YGEAGEGPGWGGAHPR Unmodified 1596.707 0.70695288 820 P26640 VARS Valine--tRNA ligase yes yes 0 0 0 0 By MS/MS By MS/MS 3 1.41 1 1 1 1 1 3 2 33.581 33.472 3 1.0974E-43 7781 20211116_3431_TMUAki_TMT10x_P_F4 236.22 216.21 1210300 1995100 21281 2490200 3594700 2284800 1893200 1073100 1200800 1007800 1838200 1127100 1863500 153570 2502300 3405300 2313100 1987900 1150300 1274500 986950 1753500 3 3 3 3 3 3 3 3 3 3 3 970740 1579400 20695 1945500 3361100 2129100 1644300 868550 986470 819910 1435800 904010 1475100 133250 1961600 3180900 2129300 1737300 945240 1048300 802780 1371100 2 2 2 2 2 2 2 2 2 2 2 239590 415680 586.06 544660 233540 155760 248940 204550 214310 187880 402450 223080 388360 20325 540720 224350 183760 250630 205010 226210 184180 382400 1 1 1 1 1 1 1 1 1 1 1 351520000 305730000 45791000 21853 820 20089 113904;113905;113906;113907;113908 138074;138075;138076;138077 138075 4 YGEGHQAWIIGIVEK Unmodified 1698.873 0.87295558 1127 P49903;P49903-2;P49903-3 SEPHS1 Selenide, water dikinase 1 yes no 0 0 0 0 By MS/MS 7 0 1 1 63.888 64.531 3 0.071863 21280 20211116_3435_TMUAki_TMT10x_P_F7 31.801 11.137 13951000 22940000 0 24123000 15611000 27762000 17018000 13532000 14780000 14962000 16787000 12989000 21410000 1082400 24580000 14998000 27738000 17119000 14519000 15205000 14554000 16132000 1 1 0 1 1 1 1 1 1 1 1 13951000 22940000 0 24123000 15611000 27762000 17018000 13532000 14780000 14962000 16787000 12989000 21410000 1082400 24580000 14998000 27738000 17119000 14519000 15205000 14554000 16132000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 614610000 614610000 0 21854 1127 20090 113909 138078 138078 1 YGEPGEVFINK Unmodified 1251.6136 0.61355299 777 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 0 By MS/MS By MS/MS 4.5 1.17 1 2 5 4 4 8 8 56.246 56.296 2;3 5.5224E-30 16902 20211116_3431_TMUAki_TMT10x_P_F4 269.99 212.81 89790000 146090000 840280 173250000 141280000 161510000 89764000 142670000 141150000 126980000 132580000 83604000 136420000 8264100 174650000 134180000 164840000 95336000 145540000 141040000 124660000 128160000 19 19 6 19 19 19 19 19 19 19 19 51398000 81697000 362360 95991000 111470000 132720000 65297000 80447000 82367000 70350000 73056000 47858000 76286000 5176600 97466000 105730000 131760000 69176000 84128000 82717000 69123000 70762000 13 13 5 13 13 13 13 13 13 13 13 38391000 64395000 477920 77258000 29809000 28793000 24467000 62225000 58784000 56631000 59524000 35746000 60136000 3087500 77183000 28450000 33073000 26160000 61412000 58327000 55539000 57398000 6 6 1 6 6 6 6 6 6 6 6 15934000000 9497400000 6436500000 21855 777 20091 113910;113911;113912;113913;113914;113915;113916;113917;113918;113919;113920;113921;113922;113923;113924;113925 138079;138080;138081;138082;138083;138084;138085;138086;138087;138088;138089;138090;138091;138092;138093;138094;138095;138096;138097;138098;138099;138100;138101 138082 23 YGEPSEVFINR Unmodified 1309.6303 0.63026569 2323 Q8WXF1;Q8WXF1-2 PSPC1 Paraspeckle component 1 yes no 0 0 0 0 By MS/MS By MS/MS 3.62 0.857 1 2 4 1 4 4 49.538 49.551 2;3 1.4168E-29 14560 20211116_3442_TMUAki_TMT10x_S_F4 258.95 232.85 20673000 34314000 136800 39256000 29463000 33229000 22312000 28041000 29237000 26831000 29305000 19248000 32037000 1801800 39608000 28069000 34106000 23221000 28736000 29443000 26254000 28267000 8 8 4 8 8 8 8 8 8 8 8 9814300 15966000 24706 18263000 19916000 24417000 14092000 13718000 14165000 13098000 13959000 9138100 14906000 956400 18561000 18950000 24255000 14601000 14469000 14400000 12817000 13472000 4 4 2 4 4 4 4 4 4 4 4 10859000 18348000 112100 20994000 9547100 8811500 8220100 14323000 15072000 13733000 15346000 10110000 17131000 845360 21048000 9118400 9851800 8619500 14267000 15043000 13437000 14795000 4 4 2 4 4 4 4 4 4 4 4 4010700000 2269000000 1741800000 21856 2323 20092 113926;113927;113928;113929;113930;113931;113932;113933 138102;138103;138104;138105;138106;138107;138108;138109 138107 8 YGEPTLRR Unmodified 990.52468 0.52467841 1609 Q13200;Q13200-3;Q13200-2 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 0 0 0 1 By MS/MS 5 0 1 1 29.462 29.393 3 0.0094004 6452 20211116_3433_TMUAki_TMT10x_P_F5 75.761 55.432 279230 434610 0 408960 474100 525220 335650 264540 288920 262400 352180 259960 405440 22545 420760 450890 522030 346260 282060 298220 256360 337780 1 1 0 1 1 1 1 1 1 1 1 279230 434610 0 408960 474100 525220 335650 264540 288920 262400 352180 259960 405440 22545 420760 450890 522030 346260 282060 298220 256360 337780 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12037000 12037000 0 21857 1609 20093 113934 138110 138110 1 YGETANECGEAFFFYGK Unmodified 1988.8251 0.82507869 1091 P49321;P49321-3;P49321-2 NASP Nuclear autoantigenic sperm protein yes no 0 0 0 0 By MS/MS By MS/MS 4.48 1.53 3 4 4 5 5 2 11 12 74.35 74.286 2;3 4.5706E-43 26046 20211116_3430_TMUAki_TMT10x_P_F3 231.66 216.39 84646000 150620000 518080 122990000 99552000 145700000 107760000 103260000 93409000 106910000 111200000 78813000 140440000 6412900 127760000 95653000 146080000 108440000 107240000 96287000 104260000 106720000 26 26 12 26 26 26 26 26 26 26 26 41399000 72708000 184370 59021000 44997000 91323000 51362000 51365000 47230000 52613000 53366000 38546000 67794000 2786800 61661000 43304000 90143000 51638000 54278000 48447000 51333000 51290000 12 12 6 12 12 12 12 12 12 12 12 43247000 77915000 333720 63969000 54555000 54381000 56402000 51894000 46179000 54297000 57835000 40266000 72651000 3626200 66100000 52349000 55935000 56798000 52959000 47841000 52930000 55430000 14 14 6 14 14 14 14 14 14 14 14 17295000000 8276900000 9017700000 21858 1091 20094 113935;113936;113937;113938;113939;113940;113941;113942;113943;113944;113945;113946;113947;113948;113949;113950;113951;113952;113953;113954;113955;113956;113957 138111;138112;138113;138114;138115;138116;138117;138118;138119;138120;138121;138122;138123;138124;138125;138126;138127;138128;138129;138130;138131;138132;138133;138134;138135;138136;138137 138114 27 YGEVEEMNVCDNLGDHLVGNVYVK Oxidation (M) 2768.2422 0.24218048 597 Q01081;P0DN76;Q01081-2;Q01081-4 U2AF1 Splicing factor U2AF 35 kDa subunit yes no 0 0 1 0 By MS/MS By MS/MS 3.43 0.904 1 3 2 1 4 3 64.299 64.07 3;4 5.6288E-08 21895 20211116_3430_TMUAki_TMT10x_P_F3 95.996 93.073 47268000 82322000 294670 71960000 51902000 89806000 56182000 61480000 59271000 60083000 61732000 44009000 76777000 3181300 74409000 49853000 89751000 56860000 63896000 60250000 58738000 59475000 15 15 5 15 15 15 15 15 15 15 15 33871000 58696000 173370 51031000 34792000 73486000 40689000 43071000 41403000 42515000 43710000 31535000 54741000 2282400 52938000 33488000 72794000 40987000 45310000 42171000 41545000 42094000 10 10 4 10 10 10 10 10 10 10 10 13397000 23626000 121310 20928000 17110000 16321000 15492000 18409000 17868000 17569000 18022000 12474000 22035000 898890 21472000 16365000 16958000 15873000 18587000 18079000 17193000 17381000 5 5 1 5 5 5 5 5 5 5 5 6366900000 4343500000 2023400000 21859 597 20095 113958;113959;113960;113961;113962;113963;113964 138138;138139;138140;138141;138142;138143;138144;138145;138146;138147;138148;138149;138150;138151;138152;138153 138144 576 16 YGEVEEMNVCDNLGDHLVGNVYVK Unmodified 2752.2473 0.24726586 597 Q01081;P0DN76;Q01081-2;Q01081-4 U2AF1 Splicing factor U2AF 35 kDa subunit yes no 0 0 0 0 By MS/MS 2 0 1 1 69.717 69.533 3 2.6864E-13 22269 20211116_3440_TMUAki_TMT10x_S_F2 121.26 113.73 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21860 597 20095 113965 138154 138154 1 YGEYFPGTGDLR Unmodified 1373.6252 0.62518031 2362;1645 Q13547;Q92769;Q92769-3 HDAC1;HDAC2 Histone deacetylase 1;Histone deacetylase 2 no no 0 0 0 0 By MS/MS By MS/MS 4.22 1.31 1 2 2 2 2 5 4 56.984 56.938 2 2.838E-16 19948 20211116_3441_TMUAki_TMT10x_S_F3 199.81 163.47 35207000 60989000 115290 68293000 44176000 50122000 36690000 38467000 36486000 35367000 45288000 32781000 56937000 2952800 68882000 42164000 51920000 37601000 39606000 37440000 34669000 43415000 8 8 4 8 8 8 8 8 8 8 8 16303000 27681000 96065 31042000 25325000 34422000 21775000 17319000 17345000 16405000 20233000 15180000 25842000 1505000 31481000 24195000 34474000 22136000 18444000 17942000 16060000 19428000 4 4 2 4 4 4 4 4 4 4 4 18904000 33308000 19228 37251000 18851000 15701000 14914000 21148000 19141000 18962000 25055000 17601000 31095000 1447700 37402000 17968000 17446000 15465000 21162000 19498000 18609000 23987000 4 4 2 4 4 4 4 4 4 4 4 12967000000 7369400000 5597900000 21861 1645;2362 20096 113966;113967;113968;113969;113970;113971;113972;113973;113974 138155;138156;138157;138158;138159;138160;138161;138162;138163 138159 9 YGFGEAGKPK Unmodified 1052.5291 0.52909508 1635 Q13451 FKBP5 Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 37.703 38.086 3 0.013454 10471 20211116_3435_TMUAki_TMT10x_P_F7 60.598 45.337 1596500 2630200 19934 2459100 3036400 2765600 2046600 1980900 2211100 1663400 2289000 1486500 2453600 153430 2525300 2886600 2780900 2132800 2044200 2245000 1637600 2205700 3 3 2 3 3 3 3 3 3 3 3 1076700 1751400 14914 1668900 2429600 2226400 1435000 1085500 1147600 999630 1393000 1002500 1633900 104430 1716700 2304400 2208100 1498700 1158600 1188800 979830 1336200 2 2 1 2 2 2 2 2 2 2 2 519800 878810 5019.7 790210 606790 539240 611600 895480 1063400 663760 895920 484020 819690 48992 808650 582240 572830 634110 885550 1056200 657810 869450 1 1 1 1 1 1 1 1 1 1 1 81115000 58031000 23084000 21862 1635 20097 113975;113976;113977 138164;138165 138164 2 YGFNEGHSFR Unmodified 1212.5312 0.53122035 3044 Q9P015 MRPL15 39S ribosomal protein L15, mitochondrial yes yes 0 0 0 0 By MS/MS 5 0 1 1 34.062 34.24 3 0.00015178 7195 20211116_3444_TMUAki_TMT10x_S_F5 110.18 87.6 343550 523960 12655 655570 288650 267390 314660 296240 330670 274160 458230 319970 489400 39508 653690 278190 296990 318310 299080 340230 268670 438090 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 343550 523960 12655 655570 288650 267390 314660 296240 330670 274160 458230 319970 489400 39508 653690 278190 296990 318310 299080 340230 268670 438090 1 1 1 1 1 1 1 1 1 1 1 19370000 0 19370000 21863 3044 20098 113978 138166 138166 1 YGGDEIPFSPYR Unmodified 1399.6408 0.64083038 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 59.332 59.379 2 1.7739E-15 18227 20211116_3431_TMUAki_TMT10x_P_F4 195.36 71.494 12608000 23283000 83747 21719000 14205000 17612000 14379000 16135000 17702000 15369000 17999000 11740000 21719000 1123000 22206000 13628000 18162000 14679000 16456000 17874000 15041000 17353000 4 4 2 4 4 4 4 4 4 4 4 2993800 5463700 0 4528600 4236200 7274800 5115800 4188700 4577000 3830800 4306900 2787500 5094700 262290 4727000 4083800 7172300 5126500 4403800 4670300 3756100 4163100 1 1 0 1 1 1 1 1 1 1 1 9614400 17819000 83747 17190000 9968400 10337000 9262700 11946000 13125000 11538000 13692000 8952400 16625000 860710 17479000 9544200 10990000 9552000 12053000 13204000 11285000 13190000 3 3 2 3 3 3 3 3 3 3 3 1321000000 602340000 718630000 21864 755 20099 113979;113980;113981 138167;138168;138169;138170 138167 4 YGGISTASVDFEQPTR Unmodified 1726.8162 0.81622856 1461 P98175;P98175-2;P98175-5;P98175-3;P98175-4 RBM10 RNA-binding protein 10 yes no 0 0 0 0 By MS/MS 4 0 1 1 54.416 54.574 2 6.3249E-77 16248 20211116_3431_TMUAki_TMT10x_P_F4 289.75 272.81 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21865 1461 20100 113982 138171 138171 1 YGGISTASVDFEQPTRDGLGSDNIGSR Unmodified 2798.3107 0.31072905 1461 P98175;P98175-2;P98175-5;P98175-3;P98175-4 RBM10 RNA-binding protein 10 yes no 0 0 0 1 By MS/MS 5 0 1 1 57.753 57.887 3 7.057E-60 16743 20211116_3444_TMUAki_TMT10x_S_F5 205.73 194.74 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21866 1461 20101 113983 138172 138172 1 YGGMFCNVEGAFESK Oxidation (M) 1710.7018 0.70179243 1692 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 yes yes 0 0 1 0 By MS/MS 5 0 1 1 61.409 61.576 3 0.00064124 19418 20211116_3433_TMUAki_TMT10x_P_F5 71.692 61.353 2667400 4801500 105550 5315500 3951300 5940900 3682300 3400700 3401300 3422400 3981500 2484400 4482200 337490 5395700 3788300 5956600 3740500 3586400 3493100 3341600 3822900 1 1 1 1 1 1 1 1 1 1 1 2667400 4801500 105550 5315500 3951300 5940900 3682300 3400700 3401300 3422400 3981500 2484400 4482200 337490 5395700 3788300 5956600 3740500 3586400 3493100 3341600 3822900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 240460000 240460000 0 21867 1692 20102 113984 138173 138173 2273 1 YGGPPPDSVYSGQQPSVGTEIFVGK Unmodified 2565.2387 0.23873331 271;272 O60506;O60506-2;O60506-3;O60506-4 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 0 By MS/MS By MS/MS 6.2 0.748 2 4 4 5 5 70.793 70.9 3;4 7.3323E-23 22398 20211116_3445_TMUAki_TMT10x_S_F6 152.13 130.32 50371000 86749000 586080 82890000 54384000 78886000 61118000 57296000 54072000 56717000 62581000 46903000 80932000 4375000 84774000 52339000 80125000 61424000 59327000 55620000 55417000 60106000 23 23 12 23 23 23 23 23 23 23 23 28213000 47561000 119000 46456000 28497000 55663000 34395000 31022000 29028000 30745000 34621000 26269000 44375000 2107200 47608000 27473000 55584000 34414000 32777000 29964000 30039000 33225000 13 13 5 13 13 13 13 13 13 13 13 22158000 39188000 467080 36434000 25887000 23223000 26723000 26274000 25045000 25972000 27959000 20634000 36556000 2267800 37166000 24867000 24541000 27010000 26550000 25656000 25378000 26881000 10 10 7 10 10 10 10 10 10 10 10 10613000000 4900600000 5712300000 21868 271;272 20103 113985;113986;113987;113988;113989;113990;113991;113992;113993;113994 138174;138175;138176;138177;138178;138179;138180;138181;138182;138183;138184;138185;138186;138187;138188;138189;138190;138191;138192;138193;138194;138195;138196 138190 23 YGGPPPDSVYSGVQPGIGTEVFVGK Unmodified 2506.238 0.23800503 211 O43390;O43390-2;O43390-4 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 0 By MS/MS By MS/MS 6.75 0.901 2 3 8 3 10 6 71.779 71.833 2;3;4 6.6609E-48 25700 20211116_3435_TMUAki_TMT10x_P_F7 199.37 181.27 86130000 141420000 1456900 136210000 93136000 131410000 105340000 80897000 82525000 88647000 102830000 80200000 131940000 6876900 139250000 89643000 133030000 105510000 85032000 85674000 86258000 98571000 32 32 17 32 32 32 32 32 32 32 32 46533000 74884000 852970 70382000 44083000 88879000 55570000 46590000 44620000 49500000 55210000 43330000 69858000 3857500 72396000 42581000 88453000 55427000 49591000 46248000 48225000 52931000 19 19 11 19 19 19 19 19 19 19 19 39597000 66531000 603920 65830000 49052000 42529000 49771000 34307000 37905000 39147000 47624000 36870000 62078000 3019400 66858000 47062000 44578000 50080000 35441000 39426000 38033000 45640000 13 13 6 13 13 13 13 13 13 13 13 28811000000 13158000000 15653000000 21869 211 20104 113995;113996;113997;113998;113999;114000;114001;114002;114003;114004;114005;114006;114007;114008;114009;114010 138197;138198;138199;138200;138201;138202;138203;138204;138205;138206;138207;138208;138209;138210;138211;138212;138213;138214;138215;138216;138217;138218;138219;138220;138221;138222;138223;138224;138225;138226;138227;138228;138229;138230 138210 34 YGGPQHIVGSPFK Unmodified 1385.7092 0.70918471 1703 Q14315;Q14315-2 FLNC Filamin-C yes no 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 45.44 45.329 3 0.015403 12127 20211116_3428_TMUAki_TMT10x_P_F1 52.576 31.346 2953800 4468900 56893 6240900 7826200 6091800 4917000 2822700 2655100 2779100 3993200 2750700 4176500 366160 6239400 7434400 6141700 5069600 3033600 2847600 2716000 3810700 1 1 1 1 1 1 1 1 1 1 1 2953800 4468900 56893 6240900 7826200 6091800 4917000 2822700 2655100 2779100 3993200 2750700 4176500 366160 6239400 7434400 6141700 5069600 3033600 2847600 2716000 3810700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 106040000 88265000 17776000 21870 1703 20105 114011;114012;114013 138231;138232 138231 2 YGGPYHIGGSPFK Unmodified 1378.667 0.66698555 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 48.893 48.683 3 9.0607E-06 15035 20211116_3429_TMUAki_TMT10x_P_F2 101.57 80.728 22044000 40931000 90298 41641000 30053000 32211000 25763000 37338000 40938000 33210000 34451000 20526000 38196000 1969900 42290000 28710000 33511000 26827000 37580000 40753000 32604000 33435000 5 5 2 5 5 5 5 5 5 5 5 4404000 8039400 0 7997300 10119000 13678000 6885900 7235300 8057200 6535900 6336900 4100400 7501500 430210 8246500 9620100 13439000 7190000 7660500 8084600 6412100 6166200 1 1 0 1 1 1 1 1 1 1 1 17640000 32892000 90298 33644000 19934000 18533000 18877000 30103000 32881000 26674000 28115000 16425000 30694000 1539700 34043000 19090000 20072000 19637000 29920000 32669000 26192000 27269000 4 4 2 4 4 4 4 4 4 4 4 1672000000 963940000 708010000 21871 755 20106 114014;114015;114016 138233;138234;138235;138236;138237 138233 5 YGHAACFGLQPGCLR Unmodified 1705.7817 0.7817145 1190 P52888 THOP1 Thimet oligopeptidase yes yes 0 0 0 0 By MS/MS 2 0 1 1 45.107 44.814 3 0.052345 13544 20211116_3429_TMUAki_TMT10x_P_F2 36.181 22.465 2843300 6278100 31781 6270200 6028900 10287000 4428400 6212400 5880100 4121400 4341300 2647600 5858100 309960 6457200 5742500 10140000 4620500 6459400 5863900 4111300 4235500 1 1 1 1 1 1 1 1 1 1 1 2843300 6278100 31781 6270200 6028900 10287000 4428400 6212400 5880100 4121400 4341300 2647600 5858100 309960 6457200 5742500 10140000 4620500 6459400 5863900 4111300 4235500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 123740000 123740000 0 21872 1190 20107 114017 138238 138238 1 YGIFQYDGPL Unmodified 1171.555 0.55497548 2838 Q9H993 ARMT1 Protein-glutamate O-methyltransferase yes yes 0 0 0 0 By MS/MS 5.5 0.5 1 1 2 80.315 80.32 2 0.00054031 26245 20211116_3445_TMUAki_TMT10x_S_F6 105.12 90.034 2181300 3978000 0 3770200 2960000 2394600 2939900 2065200 2009000 2523800 2768600 2031000 3711100 187000 3840400 2837400 2516900 2954300 2130100 2111500 2446000 2647300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2181300 3978000 0 3770200 2960000 2394600 2939900 2065200 2009000 2523800 2768600 2031000 3711100 187000 3840400 2837400 2516900 2954300 2130100 2111500 2446000 2647300 1 1 0 1 1 1 1 1 1 1 1 602440000 0 602440000 21873 2838 20108 114018;114019 138239 138239 1 YGIICMEDLIHEIYTVGKR Oxidation (M) 2325.1497 0.14972406 716 P18124 RPL7 60S ribosomal protein L7 yes yes 0 0 1 1 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 72.993 73.032 4 1.0365E-17 25187 20211116_3446_TMUAki_TMT10x_S_F7 149.86 142.35 37547000 63261000 229860 52592000 40624000 65384000 48876000 48803000 46352000 53172000 48686000 34960000 58989000 3234000 54598000 39164000 65447000 49067000 50587000 47348000 51750000 46894000 8 8 5 8 8 8 8 8 8 8 8 17035000 27606000 116810 23601000 16674000 37820000 20792000 22476000 21256000 24640000 22091000 15862000 25744000 1474500 24573000 16095000 37307000 20889000 23691000 21634000 23975000 21284000 4 4 3 4 4 4 4 4 4 4 4 20512000 35655000 113050 28991000 23950000 27564000 28084000 26327000 25095000 28532000 26595000 19099000 33245000 1759500 30025000 23069000 28140000 28178000 26896000 25714000 27775000 25609000 4 4 2 4 4 4 4 4 4 4 4 11018000000 6228200000 4790200000 21874 716 20109 114020;114021;114022;114023;114024;114025 138240;138241;138242;138243;138244;138245;138246;138247 138246 820 8 YGIKPEWMMIHR 2 Oxidation (M) 1591.7639 0.76393918 1735 Q14839;Q14839-2;Q8TDI0 CHD4;CHD5 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5 yes no 0 0 2 1 By MS/MS 1 0 1 1 42.539 42.539 4 0.0023782 11009 20211116_3428_TMUAki_TMT10x_P_F1 65.395 44.442 532940 1001000 23214 1035300 1486700 1558400 849840 833610 830690 759960 882660 496400 934170 79178 1061600 1410900 1539000 894730 881930 847770 745250 849860 1 1 1 1 1 1 1 1 1 1 1 532940 1001000 23214 1035300 1486700 1558400 849840 833610 830690 759960 882660 496400 934170 79178 1061600 1410900 1539000 894730 881930 847770 745250 849860 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 103840000 103840000 0 21875 1735 20110 114026 138248 138248 2336;2337 1 YGINNIR Unmodified 848.45045 0.45045083 3231 Q9Y285;Q9Y285-2 FARSA Phenylalanine--tRNA ligase alpha subunit yes no 0 0 0 0 By MS/MS 6.33 0.471 2 1 3 33.21 33.618 2 0.023322 7113 20211116_3434_TMUAki_TMT10x_P_F6 81.1 45.294 130360 192880 0 221570 292790 258760 156920 120740 144930 137900 155830 121370 180080 12190 224570 277270 258210 165910 130240 148360 133970 149990 1 1 0 1 1 1 1 1 1 1 1 130360 192880 0 221570 292790 258760 156920 120740 144930 137900 155830 121370 180080 12190 224570 277270 258210 165910 130240 148360 133970 149990 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12761000 12761000 0 21876 3231 20111 114027;114028;114029 138249;138250;138251 138250 3 YGINTTDIFQTVDLWEGK Unmodified 2099.0211 0.021135958 965 P37802;P37802-2 TAGLN2 Transgelin-2 yes no 0 0 0 0 By MS/MS By MS/MS 6.25 0.829 1 1 2 2 2 80.791 80.807 3 9.1826E-09 28590 20211116_3446_TMUAki_TMT10x_S_F7 117.65 100.77 11401000 18404000 36122 17209000 13246000 12648000 14548000 8252500 8053200 9841700 13197000 10615000 17168000 923880 17572000 12731000 13067000 14487000 8659900 8659400 9546400 12571000 3 3 1 3 3 3 3 3 3 3 3 3112000 4755200 0 4091200 3118900 4335900 3454800 1963900 2153800 2510400 3610400 2897100 4434600 194930 4224200 2994900 4348700 3446500 2132800 2299800 2429300 3437700 1 1 0 1 1 1 1 1 1 1 1 8289300 13649000 36122 13117000 10127000 8311900 11093000 6288600 5899300 7331300 9586200 7718300 12734000 728950 13348000 9735700 8718600 11041000 6527100 6359700 7117200 9133400 2 2 1 2 2 2 2 2 2 2 2 2597000000 854170000 1742900000 21877 965 20112 114030;114031;114032;114033 138252;138253;138254 138254 3 YGISGELAMRPLASLSGGQK Oxidation (M) 2050.0517 0.05172458 2957 Q9NUQ8;Q9NUQ8-2 ABCF3 ATP-binding cassette sub-family F member 3 yes no 0 0 1 1 By MS/MS 2 0 1 1 57.495 57.273 3 0.0014581 17286 20211116_3440_TMUAki_TMT10x_S_F2 64.705 51.504 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21878 2957 20113 114034 138255 138255 3043 1 YGISSMIQSQEKPDR Oxidation (M) 1753.8305 0.83049842 678 P14868 DARS Aspartate--tRNA ligase, cytoplasmic yes yes 0 0 1 1 By MS/MS By MS/MS 5 0 2 1 1 38.02 38.088 3 0.00079318 9956 20211116_3433_TMUAki_TMT10x_P_F5 74.587 67.296 1214500 2046900 0 2377900 2954400 3220800 1600100 2897100 2852800 1807200 2303800 1130600 1911200 94697 2415100 2796800 3221800 1732600 2929300 2828000 1809900 2239400 2 2 0 2 2 2 2 2 2 2 2 755160 1302600 0 1513200 2525500 2822100 1254000 2142400 1923600 1253400 1523400 703020 1216200 73955 1548400 2388700 2779000 1359200 2185900 1913400 1260700 1481900 1 1 0 1 1 1 1 1 1 1 1 459320 744370 0 864750 428910 398660 346040 754720 929230 553790 780420 427540 695020 20743 866710 408070 442880 373390 743370 914530 549140 757450 1 1 0 1 1 1 1 1 1 1 1 296090000 174840000 121260000 21879 678 20114 114035;114036 138256 138256 759 1 YGIVDYMIEQSGPPSK Oxidation (M) 1798.8448 0.8447515 654 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 1 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 60.051 60.139 3 1.6643E-07 17680 20211116_3444_TMUAki_TMT10x_S_F5 108.89 97.623 15657000 27371000 59256 25905000 20065000 27615000 18998000 20345000 20000000 19979000 21513000 14579000 25535000 1386700 26557000 19214000 27863000 19358000 21042000 20357000 19527000 20706000 6 6 4 6 6 6 6 6 6 6 6 8514600 13907000 7736.8 13179000 11346000 19386000 11256000 10086000 10152000 9897600 11053000 7927900 12974000 735000 13589000 10876000 19158000 11388000 10718000 10408000 9674200 10635000 3 3 2 3 3 3 3 3 3 3 3 7142500 13464000 51519 12726000 8719700 8228300 7742800 10260000 9848100 10081000 10460000 6650700 12561000 651690 12967000 8338700 8705500 7970100 10323000 9948300 9853000 10071000 3 3 2 3 3 3 3 3 3 3 3 2593000000 1368100000 1225000000 21880 654 20115 114037;114038;114039;114040 138257;138258;138259;138260;138261;138262 138260 716 6 YGIVDYMIEQSGPPSK Unmodified 1782.8498 0.84983687 654 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 76.453 76.475 3 6.1529E-11 26785 20211116_3446_TMUAki_TMT10x_S_F7 133.66 121.3 6556900 10889000 134150 10155000 8593800 5675500 7960400 4296100 2875500 4206300 7250500 6106100 10158000 697160 10345000 8232300 6027100 7950300 4434900 3303100 4111800 6858900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6556900 10889000 134150 10155000 8593800 5675500 7960400 4296100 2875500 4206300 7250500 6106100 10158000 697160 10345000 8232300 6027100 7950300 4434900 3303100 4111800 6858900 1 1 1 1 1 1 1 1 1 1 1 1240200000 239760000 1000400000 21881 654 20115 114041;114042;114043 138263;138264 138264 2 YGKDATNVGDEGGFAPNILENK Unmodified 2308.0972 0.097154447 520 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 1 By MS/MS By MS/MS 5.56 0.831 1 3 4 1 4 5 60.998 61.047 3;4 2.2471E-27 18345 20211116_3445_TMUAki_TMT10x_S_F6 177.87 161.15 34381000 71256000 573620 51437000 57154000 91407000 54569000 67022000 63754000 69256000 60562000 32015000 66416000 3573900 54472000 54764000 90106000 55771000 69441000 64344000 67547000 58521000 12 12 7 12 12 12 12 12 12 12 12 19655000 38740000 485050 28964000 42796000 71158000 40929000 37019000 35832000 37524000 31939000 18304000 36112000 2301100 30870000 41011000 69121000 41456000 39376000 36538000 36627000 30930000 7 7 5 7 7 7 7 7 7 7 7 14725000 32516000 88562 22473000 14358000 20249000 13640000 30003000 27922000 31732000 28624000 13711000 30303000 1272800 23602000 13753000 20985000 14315000 30065000 27805000 30920000 27590000 5 5 2 5 5 5 5 5 5 5 5 5365200000 2804500000 2560700000 21882 520 20116 114044;114045;114046;114047;114048;114049;114050;114051;114052 138265;138266;138267;138268;138269;138270;138271;138272;138273;138274;138275;138276;138277 138273 13 YGKDATNVGDEGGFAPNILENKEGLELLK Unmodified 3090.551 0.55095932 520 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 2 By MS/MS By MS/MS 6.07 1.28 2 3 3 4 2 5 9 74.447 74.465 4;5 1.6148E-42 24105 20211116_3436_TMUAki_TMT10x_P_F8 191.51 179.54 129400000 277180000 2050900 135280000 236090000 405960000 243630000 361430000 316610000 330800000 270860000 120480000 258110000 12326000 152080000 226590000 395870000 248990000 368800000 317280000 324340000 262710000 21 21 12 21 21 21 21 21 21 21 21 67234000 140600000 1489700 64713000 106380000 273120000 151060000 185550000 162070000 165420000 135300000 62606000 130910000 6682300 74494000 103170000 263420000 151230000 192470000 163450000 162390000 131350000 9 9 5 9 9 9 9 9 9 9 9 62163000 136580000 561230 70568000 129710000 132830000 92573000 175870000 154540000 165380000 135560000 57879000 127200000 5644200 77585000 123430000 132450000 97761000 176330000 153830000 161950000 131360000 12 12 7 12 12 12 12 12 12 12 12 29733000000 13613000000 16120000000 21883 520 20117 114053;114054;114055;114056;114057;114058;114059;114060;114061;114062;114063;114064;114065;114066 138278;138279;138280;138281;138282;138283;138284;138285;138286;138287;138288;138289;138290;138291;138292;138293;138294;138295;138296;138297;138298 138286 21 YGKIETIEVMEDR Unmodified 1581.7709 0.77085827 1168;1169 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 0 1 By MS/MS By MS/MS 3.27 1.6 2 2 2 2 2 1 6 5 54.108 54.05 3 1.3504E-11 17240 20211116_3429_TMUAki_TMT10x_P_F2 146.27 129.05 149340000 237660000 1083100 277270000 202200000 184080000 155130000 105170000 84381000 108960000 172460000 139050000 221910000 13704000 277810000 192740000 191510000 157550000 111020000 92064000 106260000 163640000 17 17 12 16 16 17 16 17 17 17 17 70766000 112520000 760550 123210000 120560000 133680000 91118000 53300000 42320000 54626000 81070000 65895000 105030000 7095300 124240000 114900000 133730000 92385000 58288000 46564000 53296000 77006000 8 8 6 7 7 8 7 8 8 8 8 78574000 125140000 322500 154060000 81641000 50403000 64007000 51868000 42060000 54336000 91389000 73160000 116880000 6608900 153570000 77841000 57774000 65168000 52736000 45500000 52965000 86633000 9 9 6 9 9 9 9 9 9 9 9 13414000000 8014200000 5400300000 21884 1168;1169 20118 114067;114068;114069;114070;114071;114072;114073;114074;114075;114076;114077 138299;138300;138301;138302;138303;138304;138305;138306;138307;138308;138309;138310;138311;138312;138313;138314;138315 138300 17 YGKIETIEVMEDR Oxidation (M) 1597.7658 0.76577289 1168;1169 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 1 1 By MS/MS By MS/MS 3.56 1.07 2 2 3 2 5 4 45.587 45.595 2;3 0.00023945 12638 20211116_3431_TMUAki_TMT10x_P_F4 98.04 89.815 39998000 61605000 491730 67378000 71595000 83665000 47193000 70899000 74163000 59079000 60188000 37244000 57506000 3978600 68573000 68049000 83941000 49980000 72376000 73772000 58186000 58494000 13 13 5 13 13 13 13 13 13 13 13 27976000 42130000 415300 46664000 57930000 71352000 35829000 48728000 51161000 40642000 41311000 26050000 39328000 2961300 47654000 55005000 70657000 37973000 50443000 51028000 40027000 40156000 8 8 3 8 8 8 8 8 8 8 8 12022000 19476000 76438 20714000 13665000 12313000 11364000 22171000 23001000 18436000 18877000 11194000 18178000 1017300 20919000 13045000 13284000 12007000 21933000 22744000 18160000 18337000 5 5 2 5 5 5 5 5 5 5 5 13410000000 8220600000 5189100000 21885 1168;1169 20118 114078;114079;114080;114081;114082;114083;114084;114085;114086 138316;138317;138318;138319;138320;138321;138322;138323;138324;138325;138326;138327;138328 138321 1554 13 YGLAAAVFTR Unmodified 1067.5764 0.57637963 880 P30837 ALDH1B1 Aldehyde dehydrogenase X, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 60.794 60.521 2 0.00020572 20382 20211116_3430_TMUAki_TMT10x_P_F3 117.89 84.374 18488000 33362000 735260 25709000 20597000 33580000 22835000 30312000 17890000 24623000 26921000 17219000 31102000 2247500 26886000 19850000 33650000 22892000 30814000 18737000 24283000 25690000 3 3 3 3 3 3 3 3 3 3 3 9173000 14506000 422600 13057000 9928600 21345000 6513800 16209000 4454700 11910000 12619000 8544100 13530000 1164900 13547000 9459700 21118000 6722100 16611000 4911700 11809000 11921000 2 2 2 2 2 2 2 2 2 2 2 9314600 18856000 312670 12652000 10668000 12235000 16321000 14103000 13435000 12713000 14302000 8675200 17571000 1082600 13339000 10390000 12532000 16170000 14203000 13825000 12473000 13770000 1 1 1 1 1 1 1 1 1 1 1 1346000000 487280000 858730000 21886 880 20119 114087;114088;114089 138329;138330;138331 138329 3 YGLECLFR Unmodified 1056.5063 0.50625115 2013 Q6PKG0;Q6PKG0-3;Q659C4;Q659C4-2;Q659C4-7;Q659C4-6;Q659C4-5 LARP1;LARP1B La-related protein 1;La-related protein 1B yes no 0 0 0 0 By MS/MS 8 0 1 1 67.061 66.973 2 0.10249 20487 20211116_3447_TMUAki_TMT10x_S_F8 47.749 30.806 5088200 8659300 23712 8580300 5787600 4940700 5641700 4119400 3369700 4482100 5695500 4737800 8079700 453740 8704500 5547200 5239300 5659900 4240600 3610000 4362500 5422300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5088200 8659300 23712 8580300 5787600 4940700 5641700 4119400 3369700 4482100 5695500 4737800 8079700 453740 8704500 5547200 5239300 5659900 4240600 3610000 4362500 5422300 1 1 1 1 1 1 1 1 1 1 1 312840000 0 312840000 21887 2013 20120 114090 138332 138332 1 YGLFKEENPYAR Unmodified 1485.7252 0.72522871 1211 P53801 PTTG1IP Pituitary tumor-transforming gene 1 protein-interacting protein yes yes 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 50.051 50.618 3 2.9958E-07 15534 20211116_3435_TMUAki_TMT10x_P_F7 126.1 100.44 16434000 28954000 306950 27620000 26842000 31905000 21317000 33322000 32913000 30659000 27495000 15304000 27012000 1774400 28335000 25616000 32270000 22270000 33728000 32784000 30053000 26691000 4 4 3 4 4 4 4 4 4 4 4 8049000 13075000 90596 12426000 15182000 20929000 12326000 16310000 15817000 14775000 12561000 7494900 12198000 831730 12850000 14489000 20693000 12760000 16770000 15823000 14493000 12218000 2 2 1 2 2 2 2 2 2 2 2 8384900 15879000 216350 15194000 11661000 10976000 8990500 17012000 17096000 15884000 14933000 7808800 14815000 942680 15485000 11127000 11577000 9510000 16958000 16961000 15560000 14473000 2 2 2 2 2 2 2 2 2 2 2 857480000 457310000 400170000 21888 1211 20121 114091;114092 138333;138334;138335;138336 138334 4 YGLFPANYVELRQ Unmodified 1568.7987 0.798728 1699 Q14247;Q14247-3 CTTN Src substrate cortactin yes no 0 0 0 1 By MS/MS By MS/MS 5.67 3.3 1 2 2 1 71.079 71.11 2 2.7339E-12 22265 20211116_3447_TMUAki_TMT10x_S_F8 132.32 101.25 7615900 12666000 56459 11963000 7584600 13963000 9195900 7267900 6817700 7746000 9579800 7091500 11816000 683590 12284000 7316400 13951000 9170000 7741700 7137900 7545400 9155700 2 2 2 2 2 2 2 2 2 2 2 7615900 12666000 56459 11963000 7584600 13963000 9195900 7267900 6817700 7746000 9579800 7091500 11816000 683590 12284000 7316400 13951000 9170000 7741700 7137900 7545400 9155700 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 946210000 946210000 0 21889 1699 20122 114093;114094;114095 138337;138338;138339 138339 3 YGLIGLNGIGK Unmodified 1103.6339 0.63389451 3106 Q9UG63;Q9UG63-2 ABCF2 ATP-binding cassette sub-family F member 2 yes no 0 0 0 0 By MS/MS 2 0 1 1 67.856 67.654 2 4.1481E-07 21510 20211116_3440_TMUAki_TMT10x_S_F2 111.82 57.271 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21890 3106 20123 114096 138340 138340 1 YGLLVGGAASHR Unmodified 1199.6411 0.64110515 1782 Q15274 QPRT Nicotinate-nucleotide pyrophosphorylase [carboxylating] yes yes 0 0 0 0 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 39.176 39.219 3 2.1548E-07 9701 20211116_3440_TMUAki_TMT10x_S_F2 125.72 107.58 1532200 2409400 5469.9 2538200 2726800 2617000 1791700 1464700 1663600 1417700 2033000 1426500 2248700 125000 2581400 2589900 2635200 1862400 1546000 1711100 1386600 1949700 2 2 1 2 2 2 2 2 2 2 2 1260000 1964800 0 2064400 2448900 2362000 1526000 1059700 1310400 1081800 1634600 1173000 1833700 97255 2103500 2323400 2358600 1589500 1143800 1354100 1055600 1566800 1 1 0 1 1 1 1 1 1 1 1 272220 444650 5469.9 473720 277860 254970 265730 405020 353150 335940 398400 253500 415010 27745 477950 266450 276610 272880 402160 357050 330950 382920 1 1 1 1 1 1 1 1 1 1 1 151400000 121630000 29768000 21891 1782 20124 114097;114098;114099 138341;138342;138343 138343 3 YGMNPHQTPAQLYTLQPK Oxidation (M) 2102.0255 0.025509829 892 P31939;P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 0 0 1 0 By MS/MS 4.5 3.5 1 1 2 46.466 46.466 3 8.0034E-08 12785 20211116_3436_TMUAki_TMT10x_P_F8 104.78 86.642 2005500 3262800 30051 4056500 5712700 6973100 2857200 3656100 3944100 3149100 2923300 1867400 3047500 230130 4125900 5406600 6849300 3081100 3869500 3928700 3096500 2851600 2 2 1 2 2 2 2 2 2 2 2 2005500 3262800 30051 4056500 5712700 6973100 2857200 3656100 3944100 3149100 2923300 1867400 3047500 230130 4125900 5406600 6849300 3081100 3869500 3928700 3096500 2851600 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 456830000 456830000 0 21892 892 20125 114100;114101 138344;138345;138346 138346 1087 3 YGMPPQDAFTTQWLVR Oxidation (M) 1924.9142 0.91416847 1735 Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 1 0 By MS/MS 8 0 1 1 72.296 72.123 3 0.0097337 22634 20211116_3447_TMUAki_TMT10x_S_F8 50.966 39.527 1718300 2931000 118300 3078400 2167700 2155200 2120500 2156600 2148800 2246500 2358700 1600800 2735500 259010 3116300 2084500 2252500 2154300 2195300 2192300 2190400 2268900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1718300 2931000 118300 3078400 2167700 2155200 2120500 2156600 2148800 2246500 2358700 1600800 2735500 259010 3116300 2084500 2252500 2154300 2195300 2192300 2190400 2268900 1 1 1 1 1 1 1 1 1 1 1 531280000 0 531280000 21893 1735 20126 114102 138347 138347 2338 1 YGNQLVR Unmodified 848.45045 0.45045083 913 P33993;P33993-2 MCM7 DNA replication licensing factor MCM7 yes no 0 0 0 0 By MS/MS 5 0 1 1 31.298 31.44 2 0.044779 6062 20211116_3444_TMUAki_TMT10x_S_F5 71.949 41.281 159390 257760 2524 258680 163940 154880 195390 140220 151350 139880 226180 148420 240520 15630 262280 158130 163860 195190 143300 158550 136630 215870 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 159390 257760 2524 258680 163940 154880 195390 140220 151350 139880 226180 148420 240520 15630 262280 158130 163860 195190 143300 158550 136630 215870 2 2 2 2 2 2 2 2 2 2 2 3220500 0 3220500 21894 913 20127 114103 138348;138349 138348 2 YGPFVADFADKLNEQK Unmodified 1840.8996 0.89956426 793 P24539 ATP5F1 ATP synthase F(0) complex subunit B1, mitochondrial yes yes 0 0 0 1 By MS/MS 7 0 1 1 73.918 74.133 3 2.903E-07 25351 20211116_3435_TMUAki_TMT10x_P_F7 106.19 90.765 6613800 12401000 173550 9373000 8608000 14810000 9371600 8013900 6986100 7758900 9032900 6159400 11561000 738000 9857200 8283500 14599000 9392300 8483300 7284200 7588300 8650400 2 2 2 2 2 2 2 2 2 2 2 6613800 12401000 173550 9373000 8608000 14810000 9371600 8013900 6986100 7758900 9032900 6159400 11561000 738000 9857200 8283500 14599000 9392300 8483300 7284200 7588300 8650400 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 666270000 666270000 0 21895 793 20128 114104 138350;138351 138350 2 YGPIADVSIVYDQQSR Unmodified 1809.8897 0.88972785 1389 P62995;P62995-3 TRA2B Transformer-2 protein homolog beta yes no 0 0 0 0 By MS/MS By MS/MS 4.25 1.16 1 2 4 3 2 5 7 66.814 66.734 2;3 2.1856E-107 20355 20211116_3444_TMUAki_TMT10x_S_F5 356.01 323.75 38929000 68509000 369300 62131000 50257000 59259000 48083000 46495000 43115000 46507000 51653000 36247000 63902000 3501600 63791000 48141000 60259000 48732000 47918000 44382000 45421000 49564000 15 15 9 15 15 15 15 15 15 15 15 14230000 23866000 89429 22982000 16356000 30025000 17538000 16810000 15493000 17080000 18269000 13250000 22266000 1174800 23613000 15710000 29856000 17664000 17767000 15950000 16670000 17537000 5 5 2 5 5 5 5 5 5 5 5 24698000 44643000 279870 39149000 33901000 29233000 30545000 29685000 27622000 29428000 33385000 22998000 41636000 2326900 40178000 32431000 30403000 31068000 30151000 28433000 28751000 32026000 10 10 7 10 10 10 10 10 10 10 10 13189000000 5565000000 7624400000 21896 1389 20129 114105;114106;114107;114108;114109;114110;114111;114112;114113;114114;114115;114116 138352;138353;138354;138355;138356;138357;138358;138359;138360;138361;138362;138363;138364;138365;138366;138367 138364 16 YGPIADVSIVYDQQSRR Unmodified 1965.9908 0.99083888 1389 P62995;P62995-3 TRA2B Transformer-2 protein homolog beta yes no 0 0 0 1 By MS/MS By MS/MS 7 0 3 1 2 56.684 57.313 3 1.9677E-05 18263 20211116_3435_TMUAki_TMT10x_P_F7 91.07 71.938 4522000 7787200 25800 6712300 7909800 12675000 7567900 7130300 6289600 6108700 7219900 4210600 7262200 446390 7012700 7577200 12420000 7654700 7498800 6487600 6008100 6936000 1 1 1 1 1 1 1 1 1 1 1 4522000 7787200 25800 6712300 7909800 12675000 7567900 7130300 6289600 6108700 7219900 4210600 7262200 446390 7012700 7577200 12420000 7654700 7498800 6487600 6008100 6936000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1473400000 563480000 909890000 21897 1389 20130 114117;114118;114119 138368;138369 138368 2 YGPLLDLPELPFPELER Unmodified 1997.051 0.050979523 2561 Q96T23;Q96T23-2 RSF1 Remodeling and spacing factor 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.76 1.63 2 2 4 2 4 3 9 8 81.555 81.555 2;3 6.9493E-46 27339 20211116_3431_TMUAki_TMT10x_P_F4 218.85 190.09 11485000 18479000 221620 18007000 12928000 18218000 14503000 11849000 11170000 12316000 14474000 10695000 17241000 1072400 18407000 12442000 18403000 14525000 12382000 11626000 12009000 13860000 15 15 8 15 15 15 15 15 15 15 15 6339400 10112000 133060 9789300 6398200 12007000 7706600 6472500 6147300 6932500 7700800 5903000 9434000 579920 10043000 6171300 11971000 7700500 6873900 6377200 6751700 7380600 7 7 5 7 7 7 7 7 7 7 7 5145700 8367100 88553 8218000 6530200 6210800 6796300 5376300 5022200 5383400 6772800 4791600 7806800 492440 8364200 6271200 6432300 6824900 5508600 5249000 5257400 6479300 8 8 3 8 8 8 8 8 8 8 8 2867700000 1461100000 1406600000 21898 2561 20131 114120;114121;114122;114123;114124;114125;114126;114127;114128;114129;114130;114131;114132;114133;114134;114135;114136 138370;138371;138372;138373;138374;138375;138376;138377;138378;138379;138380;138381;138382;138383;138384;138385 138374 16 YGPLPGPAVPR Unmodified 1122.6186 0.61857879 155 O15027;O15027-5;O15027-2;O15027-4;O15027-3 SEC16A Protein transport protein Sec16A yes no 0 0 0 0 By MS/MS 8 0 1 1 48.304 48.408 2 0.0041217 13490 20211116_3436_TMUAki_TMT10x_P_F8 75.213 45.64 3111600 5052400 42127 5466000 7765600 8848800 4987400 11828000 6279600 4647400 5354100 2897500 4715900 362420 5597600 7378700 8872900 5244200 11660000 6299100 4834700 5193600 1 1 1 1 1 1 1 1 1 1 1 3111600 5052400 42127 5466000 7765600 8848800 4987400 11828000 6279600 4647400 5354100 2897500 4715900 362420 5597600 7378700 8872900 5244200 11660000 6299100 4834700 5193600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 341650000 341650000 0 21899 155 20132 114137 138386 138386 1 YGPLSGVNVVYDQR Unmodified 1565.7838 0.78380622 1650 Q13595;Q13595-4;Q13595-3;Q13595-2 TRA2A Transformer-2 protein homolog alpha yes no 0 0 0 0 By MS/MS By MS/MS 6.33 0.667 1 4 4 5 4 59.249 59.598 2;3 4.7602E-43 19165 20211116_3435_TMUAki_TMT10x_P_F7 263.44 227.02 32900000 57202000 263430 54932000 46470000 60107000 41152000 45295000 40893000 40186000 45932000 30634000 53367000 2922500 56278000 44424000 60581000 42012000 46647000 41792000 39458000 44153000 11 11 6 11 11 11 11 11 11 11 11 20988000 35510000 128320 33854000 30988000 47795000 29380000 28380000 25384000 24600000 28214000 19541000 33128000 1762500 34862000 29665000 47394000 29762000 29721000 26099000 24181000 27129000 7 7 3 7 7 7 7 7 7 7 7 11912000 21693000 135110 21078000 15482000 12312000 11772000 16915000 15509000 15586000 17718000 11092000 20239000 1160000 21416000 14760000 13187000 12250000 16926000 15693000 15277000 17023000 4 4 3 4 4 4 4 4 4 4 4 7586800000 4488800000 3098000000 21900 1650 20133 114138;114139;114140;114141;114142;114143;114144;114145;114146 138387;138388;138389;138390;138391;138392;138393;138394;138395;138396;138397;138398 138390 12 YGPPPSYPNLK Unmodified 1231.6237 0.62372375 1633 Q13435 SF3B2 Splicing factor 3B subunit 2 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 50.789 50.783 3 0.00056268 14465 20211116_3436_TMUAki_TMT10x_P_F8 81.017 62.856 7425300 11221000 41115 14287000 13490000 12784000 8352900 11548000 12008000 10145000 11051000 6913500 10482000 676500 14336000 12804000 13089000 8854400 11761000 12022000 9966200 10690000 4 4 2 4 4 4 4 4 4 4 4 3812100 5776500 33363 7827200 10513000 9975900 5669100 6050500 6366600 5229400 6140800 3549400 5397800 404210 7872300 9958200 9942000 6025300 6325200 6438400 5141100 5930800 2 2 1 2 2 2 2 2 2 2 2 3613100 5444300 7752 6459500 2977000 2808400 2683700 5497400 5641300 4916000 4910300 3364000 5083900 272290 6463400 2846000 3146700 2829100 5436300 5583700 4825100 4759400 2 2 1 2 2 2 2 2 2 2 2 1351000000 885880000 465080000 21901 1633 20134 114147;114148 138399;138400;138401;138402 138400 4 YGPPSRR Unmodified 831.43514 0.43513512 1543 Q07955;Q07955-3;Q07955-2 SRSF1 Serine/arginine-rich splicing factor 1 yes no 0 0 0 1 By MS/MS 2 0 1 1 23.923 23.696 3 0.10883 5110 20211116_3429_TMUAki_TMT10x_P_F2 36.988 36.988 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21902 1543 20135 114149 138403 138403 1 YGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSK Oxidation (M) 3799.7981 0.79808266 677 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 1 0 By MS/MS By MS/MS 7.17 0.687 1 3 2 3 3 61.659 61.979 4;5 7.4804E-11 18900 20211116_3436_TMUAki_TMT10x_P_F8 83.198 72.294 57469000 103650000 718800 84711000 76680000 113960000 75353000 87923000 89733000 89737000 84808000 53511000 96642000 3480000 88194000 73501000 113700000 76949000 90762000 90484000 87567000 81963000 14 14 6 14 14 14 14 14 14 14 14 26283000 46415000 361650 39181000 27895000 66063000 33645000 40203000 40583000 39594000 35747000 24473000 43283000 2053400 40884000 26900000 65061000 34041000 42162000 40811000 38694000 34633000 8 8 4 8 8 8 8 8 8 8 8 31186000 57231000 357150 45530000 48786000 47893000 41709000 47721000 49150000 50143000 49061000 29038000 53359000 1426600 47310000 46602000 48640000 42907000 48600000 49673000 48872000 47330000 6 6 2 6 6 6 6 6 6 6 6 25392000000 13111000000 12281000000 21903 677 20136 114150;114151;114152;114153;114154;114155 138404;138405;138406;138407;138408;138409;138410;138411;138412;138413;138414;138415;138416;138417 138408 758 14 YGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSK Unmodified 3783.8032 0.80316804 677 P14866;P14866-2 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 0 By MS/MS By MS/MS 7.25 0.661 1 4 3 5 3 66.616 66.873 4;5 9.246E-17 22739 20211116_3446_TMUAki_TMT10x_S_F7 113.7 108.03 61238000 108560000 545780 115680000 74388000 81831000 80983000 38282000 32482000 43045000 64123000 57017000 101330000 4786500 117000000 71485000 84473000 80298000 41262000 36290000 41844000 60877000 19 19 9 19 19 19 19 19 19 19 19 37468000 65419000 338400 68763000 39581000 59693000 48274000 25771000 21600000 27723000 38459000 34884000 61055000 2825500 69778000 38150000 60608000 47686000 27973000 23740000 26995000 36578000 12 12 4 12 12 12 12 12 12 12 12 23770000 43143000 207380 46917000 34808000 22138000 32709000 12510000 10882000 15322000 25664000 22133000 40271000 1961100 47226000 33335000 23864000 32612000 13289000 12550000 14849000 24299000 7 7 5 7 7 7 7 7 7 7 7 14190000000 9210800000 4979300000 21904 677 20136 114156;114157;114158;114159;114160;114161;114162;114163 138418;138419;138420;138421;138422;138423;138424;138425;138426;138427;138428;138429;138430;138431;138432;138433;138434;138435;138436 138431 19 YGPSLMPGGNK Oxidation (M) 1135.5332 0.53319418 1170 P52209;P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 1 0 By MS/MS By MS/MS 6.86 0.639 2 4 1 4 3 38.42 38.737 2;3 0.00070866 11202 20211116_3435_TMUAki_TMT10x_P_F7 89.698 73.554 15938000 25266000 57541 22089000 25700000 29784000 18879000 14277000 17335000 15543000 18496000 14840000 23564000 1368200 22874000 24465000 29519000 19459000 15336000 17744000 15128000 17807000 7 7 3 7 7 7 7 7 7 7 7 15634000 24757000 54920 21479000 25395000 29515000 18540000 13893000 16905000 15212000 18005000 14556000 23089000 1340500 22264000 24172000 29221000 19114000 14954000 17308000 14803000 17335000 5 5 1 5 5 5 5 5 5 5 5 304280 508850 2621 609810 305440 269000 339330 383210 430300 330940 491470 283340 475190 27686 609880 293880 297630 345240 382290 435940 325370 472210 2 2 2 2 2 2 2 2 2 2 2 477980000 452550000 25431000 21905 1170 20137 114164;114165;114166;114167;114168;114169;114170 138437;138438;138439;138440;138441;138442;138443 138439 1559 7 YGPSLMPGGNK Unmodified 1119.5383 0.53827956 1170 P52209;P52209-2 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 0 0 0 0 By MS/MS By MS/MS 8 0 3 2 1 48.24 48.278 2;3 4.2809E-14 12893 20211116_3447_TMUAki_TMT10x_S_F8 152.86 116.02 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21906 1170 20137 114171;114172;114173 138444;138445;138446 138446 3 YGQFSGLNPGGRPITPPR Unmodified 1912.9908 0.9907793 1333 P62136;P62136-2;P62136-3 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.957 1 2 2 1 2 4 47.311 47.332 3 3.5865E-50 13627 20211116_3442_TMUAki_TMT10x_S_F4 221.24 202.16 15397000 24896000 158980 28088000 18387000 20997000 15557000 20760000 21449000 18571000 21098000 14337000 23243000 1406000 28323000 17565000 21823000 16110000 21054000 21550000 18228000 20364000 7 7 4 7 7 7 7 7 7 7 7 4681900 7957200 15713 8695700 8707800 11270000 6616100 6096300 6690300 6134600 6630100 4359100 7427700 423870 8857400 8295500 11206000 6822600 6460600 6800800 5989800 6397700 2 2 1 2 2 2 2 2 2 2 2 10716000 16939000 143270 19392000 9679400 9727500 8940700 14664000 14759000 12436000 14468000 9978100 15815000 982080 19466000 9269500 10617000 9287700 14593000 14750000 12238000 13966000 5 5 3 5 5 5 5 5 5 5 5 4317400000 2304600000 2012800000 21907 1333 20138 114174;114175;114176;114177;114178;114179 138447;138448;138449;138450;138451;138452;138453;138454 138451 8 YGQHPNIITLK Unmodified 1282.7034 0.70337105 1164;1803 P51812;Q15349;Q15349-3;Q15349-2;Q9UK32;Q9UK32-2;Q15418;Q15418-2;Q15418-3;Q15418-4 RPS6KA3;RPS6KA2;RPS6KA6;RPS6KA1 Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-2;Ribosomal protein S6 kinase alpha-6;Ribosomal protein S6 kinase alpha-1 no no 0 0 0 0 By MS/MS By MS/MS 3.33 3.3 2 1 2 1 44.631 44.526 3 0.0024992 13885 20211116_3439_TMUAki_TMT10x_S_F1 69.451 41.83 1755900 3073000 81514 3818300 3687500 3733000 2135000 2707800 3031300 2299800 2662600 1635600 2870200 248600 3841300 3501600 3785100 2274500 2792600 3031500 2262900 2580000 2 2 2 2 2 2 2 2 2 2 2 1051700 1879400 63304 2356700 3070000 3088500 1559800 1734200 1933400 1405300 1580800 979750 1755500 174460 2381400 2909500 3070700 1672700 1821700 1938000 1386100 1535900 1 1 1 1 1 1 1 1 1 1 1 704190 1193600 18210 1461600 617450 644500 575150 973640 1097900 894470 1081800 655810 1114700 74139 1459900 592080 714370 601790 970950 1093500 876850 1044100 1 1 1 1 1 1 1 1 1 1 1 151960000 113970000 37992000 21908 1164;1803 20139 114180;114181;114182 138455;138456;138457 138457 3 YGQHPPDAVDEPQMLTNEK Oxidation (M) 2183.9793 0.9793475 811 P26358;P26358-2;P26358-3 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 0 0 1 0 By MS/MS 3 0 1 1 41.597 41.29 4 0.0077597 13612 20211116_3441_TMUAki_TMT10x_S_F3 50.358 16.316 576180 917210 0 995290 546720 427210 449390 896460 958310 777880 916840 536440 856140 41990 1001300 521420 480800 476680 884230 951180 764600 885730 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 576180 917210 0 995290 546720 427210 449390 896460 958310 777880 916840 536440 856140 41990 1001300 521420 480800 476680 884230 951180 764600 885730 1 1 0 1 1 1 1 1 1 1 1 51571000 0 51571000 21909 811 20140 114183 138458 138458 964 1 YGQISEVVVVK Unmodified 1219.6812 0.68123863 1673 Q14011;Q14011-2 CIRBP Cold-inducible RNA-binding protein yes no 0 0 0 0 By MS/MS By MS/MS 5.75 0.924 1 4 4 3 5 7 58.496 58.703 2;3 1.7208E-18 17372 20211116_3445_TMUAki_TMT10x_S_F6 219.5 140.98 67712000 105680000 157320 114300000 86531000 94820000 71510000 70917000 71445000 68253000 85281000 63045000 98640000 5669900 115700000 82579000 97261000 73319000 73230000 73177000 66769000 81839000 11 11 4 11 11 11 11 11 11 11 11 30818000 47031000 89544 50668000 48021000 61820000 36783000 30814000 32698000 29821000 38250000 28695000 43898000 2771800 51600000 45760000 61593000 37772000 32864000 33640000 29165000 36727000 5 5 2 5 5 5 5 5 5 5 5 36894000 58647000 67775 63627000 38510000 33001000 34727000 40103000 38747000 38432000 47031000 34350000 54742000 2898000 64100000 36818000 35668000 35547000 40366000 39537000 37603000 45112000 6 6 2 6 6 6 6 6 6 6 6 9181500000 4312400000 4869100000 21910 1673 20141 114184;114185;114186;114187;114188;114189;114190;114191;114192;114193;114194;114195 138459;138460;138461;138462;138463;138464;138465;138466;138467;138468;138469 138466 11 YGSDIVPFSK Unmodified 1111.555 0.55497548 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 5.86 0.833 3 2 2 3 4 58.868 59.2 2 0.00021074 19032 20211116_3435_TMUAki_TMT10x_P_F7 117.7 95.55 66817000 110890000 394070 141950000 94418000 102070000 65366000 100920000 116210000 91648000 100050000 62214000 103590000 6063900 142020000 89811000 106420000 69396000 102390000 115430000 89890000 97018000 7 7 5 7 7 7 7 7 7 7 7 26253000 40126000 263890 52146000 65420000 71531000 39776000 40387000 44486000 36476000 38202000 24446000 37487000 2933800 52639000 62097000 70976000 41833000 42517000 44827000 35785000 37046000 4 4 3 4 4 4 4 4 4 4 4 40564000 70764000 130190 89803000 28998000 30541000 25590000 60530000 71729000 55172000 61851000 37768000 66102000 3130100 89383000 27714000 35443000 27563000 59869000 70602000 54105000 59971000 3 3 2 3 3 3 3 3 3 3 3 6235800000 3598200000 2637600000 21911 648 20142 114196;114197;114198;114199;114200;114201;114202 138470;138471;138472;138473;138474;138475;138476;138477;138478;138479 138474 10 YGSDIVPFSKVDEEQMK Unmodified 1970.9295 0.92954376 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 1 By MS/MS By MS/MS 5 0.632 1 3 1 3 2 61.356 61.439 3;4 1.7365E-08 18224 20211116_3444_TMUAki_TMT10x_S_F5 119.96 105.71 14114000 23572000 94500 25971000 16341000 9487600 10469000 9932700 7810800 10483000 16960000 13142000 22004000 1289400 26079000 15527000 10692000 10844000 10093000 8387100 10215000 16078000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14114000 23572000 94500 25971000 16341000 9487600 10469000 9932700 7810800 10483000 16960000 13142000 22004000 1289400 26079000 15527000 10692000 10844000 10093000 8387100 10215000 16078000 3 3 3 3 3 3 3 3 3 3 3 1108600000 438230000 670380000 21912 648 20143 114203;114204;114205;114206;114207 138480;138481;138482;138483;138484 138482 5 YGSDIVPFSKVDEEQMK Oxidation (M) 1986.9245 0.92445838 648 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 1 1 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 57.019 57.136 3 0.00044039 17518 20211116_3433_TMUAki_TMT10x_P_F5 70.96 61.43 30856000 55322000 426410 54781000 49754000 67571000 35874000 76108000 73174000 59721000 51919000 28733000 51619000 3220000 56116000 47383000 68240000 38269000 76460000 72056000 59002000 50743000 8 8 7 8 8 8 8 8 8 8 8 16577000 29735000 354350 29860000 33894000 55138000 26795000 42047000 41917000 32699000 27998000 15437000 27746000 1947100 30831000 32342000 54318000 28019000 43131000 41488000 32321000 27440000 4 4 4 4 4 4 4 4 4 4 4 14279000 25587000 72058 24922000 15860000 12432000 9078400 34061000 31257000 27022000 23921000 13295000 23873000 1272900 25284000 15041000 13922000 10250000 33329000 30568000 26681000 23303000 4 4 3 4 4 4 4 4 4 4 4 4375800000 2422500000 1953200000 21913 648 20143 114208;114209;114210;114211 138485;138486;138487;138488;138489;138490;138491;138492 138485 701 8 YGSIAGLAELGHDVIK Unmodified 1641.8726 0.87262123 1125 P49848;P49848-3;P49848-4;P49848-2 TAF6 Transcription initiation factor TFIID subunit 6 yes no 0 0 0 0 By MS/MS 6 0 1 1 71.616 71.56 3 0.00030611 22300 20211116_3434_TMUAki_TMT10x_P_F6 74.428 48.386 3735000 6318200 54360 4883900 4497200 7443600 5660800 3511900 2892100 3565800 4577400 3478000 5890200 370990 5122000 4344700 7336800 5595400 3770700 3123200 3480400 4363500 1 1 1 1 1 1 1 1 1 1 1 3735000 6318200 54360 4883900 4497200 7443600 5660800 3511900 2892100 3565800 4577400 3478000 5890200 370990 5122000 4344700 7336800 5595400 3770700 3123200 3480400 4363500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 470570000 470570000 0 21914 1125 20144 114212 138493 138493 1 YGSVAFPNFEQGVACLR Unmodified 1913.9094 0.90941744 61 O00116 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 74.692 74.692 2;3 4.392E-10 26169 20211116_3439_TMUAki_TMT10x_S_F1 121.28 103.84 1805500 2533900 25618 2809800 1566800 2665200 1886400 1476000 1245500 1414200 1868000 1681300 2365400 170220 2844800 1511900 2697400 1876900 1558900 1317300 1383700 1782700 1 1 1 1 1 1 1 1 1 1 1 1805500 2533900 25618 2809800 1566800 2665200 1886400 1476000 1245500 1414200 1868000 1681300 2365400 170220 2844800 1511900 2697400 1876900 1558900 1317300 1383700 1782700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 527330000 527330000 0 21915 61 20145 114213;114214 138494;138495 138495 2 YGVFPLR Unmodified 850.47012 0.47012364 625;1500 Q02880;Q02880-2;P11388;P11388-2;P11388-3;P11388-4 TOP2B;TOP2A DNA topoisomerase 2-beta;DNA topoisomerase 2-alpha no no 0 0 0 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 54.512 54.288 2 0.039443 17300 20211116_3429_TMUAki_TMT10x_P_F2 74.849 46.337 22927000 34383000 254630 42247000 26317000 28742000 22546000 22921000 23629000 22690000 26796000 21348000 32112000 1959700 42341000 25140000 29983000 23100000 23591000 24103000 22170000 25751000 5 5 3 5 5 5 5 5 5 5 5 11169000 15828000 162420 20062000 15630000 18816000 11465000 10824000 11099000 10568000 12481000 10400000 14785000 984090 20149000 14881000 19066000 11835000 11401000 11357000 10332000 11997000 2 2 1 2 2 2 2 2 2 2 2 11758000 18555000 92212 22185000 10687000 9926100 11081000 12096000 12530000 12122000 14315000 10948000 17328000 975620 22193000 10258000 10917000 11264000 12190000 12747000 11838000 13754000 3 3 2 3 3 3 3 3 3 3 3 2393000000 1332600000 1060500000 21916 1500;625 20146 114215;114216;114217;114218;114219 138496;138497;138498;138499;138500 138497 5 YGVIILDEAHER Unmodified 1413.7252 0.72522871 196 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 0 0 0 0 By MS/MS By MS/MS 2.93 1.33 3 2 4 3 2 7 7 50.155 50.148 2;3 4.2675E-18 17234 20211116_3441_TMUAki_TMT10x_S_F3 194.12 172.61 15163000 23913000 272790 26006000 22212000 25317000 16589000 20076000 20497000 18491000 20934000 14119000 22321000 1477900 26372000 21164000 25716000 17242000 20629000 20696000 18125000 20181000 11 11 8 11 11 11 11 11 11 11 11 8273800 12913000 125000 14267000 15880000 19148000 10512000 10828000 11521000 10223000 11858000 7703900 12054000 821880 14532000 15094000 19019000 10975000 11411000 11689000 10009000 11428000 6 6 4 6 6 6 6 6 6 6 6 6888900 11000000 147790 11739000 6331800 6169200 6077000 9248100 8975400 8268500 9076500 6415000 10267000 656070 11840000 6070800 6697600 6267200 9218100 9007700 8115800 8752600 5 5 4 5 5 5 5 5 5 5 5 10751000000 6337000000 4414000000 21917 196 20147 114220;114221;114222;114223;114224;114225;114226;114227;114228;114229;114230;114231;114232;114233 138501;138502;138503;138504;138505;138506;138507;138508;138509;138510;138511;138512;138513;138514 138512 14 YGVIIVGNPK Unmodified 1058.6124 0.61243078 2376 Q92900;Q92900-2 UPF1 Regulator of nonsense transcripts 1 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 55.426 55.276 2 8.5101E-10 18231 20211116_3439_TMUAki_TMT10x_S_F1 165.11 130.01 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21918 2376 20148 114234;114235 138515;138516 138516 2 YGVNPGPIVGTTR Unmodified 1329.7041 0.70409934 1006;1007 P42166;P42167;P42167-2;P42167-3 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 0 0 By MS/MS By MS/MS 5.47 2.78 4 3 4 4 8 7 44.828 44.973 2;3 4.9321E-30 13743 20211116_3446_TMUAki_TMT10x_S_F7 252.97 201.4 27701000 47223000 487800 54087000 41750000 45379000 29436000 42313000 47580000 38281000 42535000 25795000 44090000 2830800 54563000 39744000 46698000 31064000 43055000 47431000 37554000 41188000 20 20 12 20 20 20 20 20 20 20 20 11362000 19798000 268720 22285000 27810000 31844000 17377000 17862000 19890000 15870000 17487000 10581000 18483000 1389700 22702000 26418000 31536000 18250000 18807000 20040000 15582000 16944000 9 9 6 9 9 9 9 9 9 9 9 16339000 27425000 219080 31802000 13940000 13536000 12059000 24450000 27690000 22411000 25047000 15214000 25607000 1441100 31861000 13327000 15161000 12814000 24247000 27392000 21972000 24244000 11 11 6 11 11 11 11 11 11 11 11 9628100000 5848100000 3780000000 21919 1006;1007 20149 114236;114237;114238;114239;114240;114241;114242;114243;114244;114245;114246;114247;114248;114249;114250 138517;138518;138519;138520;138521;138522;138523;138524;138525;138526;138527;138528;138529;138530;138531;138532;138533;138534;138535;138536 138531 20 YGVNPGPIVGTTRK Unmodified 1457.7991 0.79906235 1006;1007 P42166;P42167;P42167-2;P42167-3 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 41.148 40.973 3 8.0014E-10 10494 20211116_3440_TMUAki_TMT10x_S_F2 137.93 104.25 5204100 7769500 35096 10110000 9562400 7786900 5434700 6143100 7919200 5380800 7111400 4845500 7258600 497050 10114000 9065400 8039100 5805400 6306100 7919000 5286600 6885100 4 4 3 4 4 4 4 4 4 4 4 2692400 3885800 20145 5175000 7417200 6150100 3537400 3228800 4070100 2720900 3729700 2506800 3630700 280020 5202900 7013800 6139500 3807500 3415100 4105200 2678300 3608500 2 2 1 2 2 2 2 2 2 2 2 2511700 3883700 14952 4934900 2145200 1636800 1897300 2914300 3849100 2659900 3381700 2338700 3627800 217040 4910900 2051600 1899600 1997900 2891000 3813800 2608300 3276600 2 2 2 2 2 2 2 2 2 2 2 445990000 245530000 200470000 21920 1006;1007 20150 114251;114252;114253 138537;138538;138539;138540 138539 4 YGVSGYPTLK Unmodified 1083.5601 0.56006086 868 P30101 PDIA3 Protein disulfide-isomerase A3 yes yes 0 0 0 0 By MS/MS By MS/MS 5.12 3.22 3 2 3 5 3 51.763 51.649 2;3 7.7723E-09 14779 20211116_3436_TMUAki_TMT10x_P_F8 176.78 134.8 28102000 42650000 103360 60741000 47618000 43293000 29772000 42347000 48377000 34348000 43789000 26166000 39864000 2630600 60427000 45212000 45159000 31708000 42864000 48238000 33875000 42384000 7 7 4 7 7 7 7 7 7 7 7 10844000 16606000 0 23504000 34500000 29953000 16802000 16432000 19294000 13547000 16761000 10096000 15521000 1183200 23587000 32632000 29813000 18045000 17303000 19429000 13350000 16247000 2 2 0 2 2 2 2 2 2 2 2 17258000 26044000 103360 37237000 13118000 13340000 12970000 25915000 29083000 20801000 27028000 16070000 24344000 1447400 36840000 12579000 15346000 13663000 25561000 28809000 20526000 26137000 5 5 4 5 5 5 5 5 5 5 5 4705600000 3046800000 1658800000 21921 868 20151 114254;114255;114256;114257;114258;114259;114260;114261 138541;138542;138543;138544;138545;138546;138547;138548;138549;138550 138544 10 YHAASAEEQATIER Unmodified 1574.7325 0.73249893 3246 Q9Y2R9 MRPS7 28S ribosomal protein S7, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 30.8 30.561 3 1.5262E-23 7724 20211116_3429_TMUAki_TMT10x_P_F2 184.11 147.66 221790 385650 3123.4 371790 331780 322220 264840 215230 230420 199020 317180 206500 359800 19328 379520 316410 328900 271070 223740 238990 195040 303290 2 2 1 2 2 2 2 2 2 2 2 124150 214940 3123.4 205460 221250 233010 156420 128090 133280 116660 183040 115620 200530 14564 210680 210710 233320 161340 135180 138370 114410 175030 1 1 1 1 1 1 1 1 1 1 1 97638 170700 0 166330 110530 89203 108410 87140 97132 82360 134140 90883 159270 4764.2 168840 105700 95585 109730 88559 100620 80634 128250 1 1 0 1 1 1 1 1 1 1 1 32889000 20276000 12613000 21922 3246 20152 114262;114263 138551;138552 138551 2 YHFEDVGGVQGAR Unmodified 1433.6688 0.66877646 2877 Q9HD47;Q9HD47-4;Q9HD47-2;Q9HD47-3 RANGRF Ran guanine nucleotide release factor yes no 0 0 0 0 By MS/MS 4 0 1 1 37.838 37.872 3 0.00071094 9524 20211116_3431_TMUAki_TMT10x_P_F4 68.809 58.438 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21923 2877 20153 114264 138553 138553 1 YHFLEER Unmodified 992.47158 0.4715802 2496 Q96I59;Q96I59-2 NARS2 Probable asparagine--tRNA ligase, mitochondrial yes no 0 0 0 0 By MS/MS 4 0 1 1 36.428 36.456 3 0.013939 8950 20211116_3431_TMUAki_TMT10x_P_F4 68.787 51.691 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21924 2496 20154 114265 138554 138554 1 YHFNMGLLMGEAR 2 Oxidation (M) 1569.7068 0.70681823 1065 P47897;P47897-2 QARS Glutamine--tRNA ligase yes no 0 0 2 0 By MS/MS 7 0 1 1 42.965 43.514 3 0.0082035 13182 20211116_3446_TMUAki_TMT10x_S_F7 59.227 50.498 612640 1120000 3853.9 1241000 618520 577700 557060 1078900 1095500 887780 1060800 570460 1045600 54466 1247500 591750 640690 584930 1065900 1089700 874920 1024400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 612640 1120000 3853.9 1241000 618520 577700 557060 1078900 1095500 887780 1060800 570460 1045600 54466 1247500 591750 640690 584930 1065900 1089700 874920 1024400 1 1 1 1 1 1 1 1 1 1 1 58594000 0 58594000 21925 1065 20155 114266 138555 138555 1388;1389 1 YHGNVMLLR Oxidation (M) 1117.5702 0.57024839 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 1 0 By MS/MS By MS/MS 2.33 1.89 2 1 1 2 33.985 33.982 3 0.004385 7565 20211116_3428_TMUAki_TMT10x_P_F1 66.692 34.372 842020 1208400 12106 1306200 1119800 834920 842080 534260 597040 515200 921240 784090 1127900 84981 1318600 1067500 872870 861100 557800 629610 503960 878650 2 2 2 2 2 2 2 2 2 2 2 372260 518940 5915 556100 713600 544620 394580 259020 250050 248250 429160 346660 484370 41156 564510 676570 549110 412450 277440 267060 242900 408450 1 1 1 1 1 1 1 1 1 1 1 469750 689420 6190.7 750090 406180 290300 447500 275240 346990 266950 492070 437430 643530 43825 754050 390880 323760 448650 280350 362550 261060 470200 1 1 1 1 1 1 1 1 1 1 1 61751000 34899000 26852000 21926 1092 20156 114267;114268;114269 138556;138557;138558 138556 1440 3 YHGNVMLLR Unmodified 1101.5753 0.57533377 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 37.764 37.942 3 0.00034929 11245 20211116_3439_TMUAki_TMT10x_S_F1 107.57 72.279 4373900 6877800 11785 6816700 6569300 6624600 4520500 3392800 3794400 3779300 5198900 4071900 6417500 314270 6955600 6242300 6688000 4670000 3624200 3941800 3675200 4971700 3 3 2 3 3 3 3 3 3 3 3 4062000 6338600 8921.2 6245700 6263700 6358900 4216800 2991400 3390600 3418800 4759700 3781500 5914300 285830 6379900 5949100 6395300 4358800 3224200 3534100 3321400 4549100 2 2 1 2 2 2 2 2 2 2 2 311940 539140 2863.3 570940 305650 265790 303640 401390 403810 360550 439210 290460 503190 28442 575640 293200 292640 311200 400040 407680 353810 422600 1 1 1 1 1 1 1 1 1 1 1 136570000 110040000 26531000 21927 1092 20156 114270;114271;114272;114273 138559;138560;138561 138561 3 YHIQVCTTTPCMLR Oxidation (M) 1794.8215 0.82153041 733 P19404 NDUFV2 NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial yes yes 0 0 1 0 By MS/MS 1 0 1 1 40.935 40.773 3 0.0040163 12313 20211116_3439_TMUAki_TMT10x_S_F1 64.394 53.926 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21928 733 20157 114274 138562 138562 841 1 YHLMQFAEVTR Unmodified 1393.6813 0.6812554 1922 Q5JVF3;Q5JVF3-3;Q5JVF3-2;Q5JVF3-4 PCID2 PCI domain-containing protein 2 yes no 0 0 0 0 By MS/MS 8 0 1 1 50.457 50.544 3 0.0089974 14347 20211116_3436_TMUAki_TMT10x_P_F8 64.64 45.508 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21929 1922 20158 114275 138563 138563 1 YHLMQFAEVTR Oxidation (M) 1409.6762 0.67617003 1922 Q5JVF3;Q5JVF3-3;Q5JVF3-2;Q5JVF3-4 PCID2 PCI domain-containing protein 2 yes no 0 0 1 0 By MS/MS 7 0 2 2 39.747 40.379 3 6.1038E-05 11870 20211116_3446_TMUAki_TMT10x_S_F7 89.403 61.661 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21930 1922 20158 114276;114277 138564;138565 138564 2516 2 YHPDKNPNEGEK Unmodified 1426.6477 0.64770667 889 P31689;P31689-2 DNAJA1 DnaJ homolog subfamily A member 1 yes no 0 0 0 1 By MS/MS 4.5 0.5 1 1 2 29.192 29.179 4 9.0969E-09 6027 20211116_3431_TMUAki_TMT10x_P_F4 142.08 112.75 236810 397010 3850.8 344650 284270 352160 228290 146270 179900 168080 216820 220520 370260 23887 355410 271400 353670 232990 159760 186440 163260 208010 1 1 1 1 1 1 1 1 1 1 1 236810 397010 3850.8 344650 284270 352160 228290 146270 179900 168080 216820 220520 370260 23887 355410 271400 353670 232990 159760 186440 163260 208010 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32093000 32093000 0 21931 889 20159 114278;114279 138566 138566 1 YHPFLYDR Unmodified 1109.5294 0.52942943 20 A6NHR9;A6NHR9-2 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 0 0 By MS/MS 7 0 1 1 38.584 39.023 3 0.036306 10988 20211116_3435_TMUAki_TMT10x_P_F7 48.796 17.424 390930 653490 9668.3 739230 1000100 910360 578470 497190 473200 394020 535540 364060 610090 49953 750640 948930 907580 605560 523280 488220 389070 514690 1 1 1 1 1 1 1 1 1 1 1 390930 653490 9668.3 739230 1000100 910360 578470 497190 473200 394020 535540 364060 610090 49953 750640 948930 907580 605560 523280 488220 389070 514690 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15530000 15530000 0 21932 20 20160 114280 138567 138567 1 YHPGYFGK Unmodified 967.4552 0.45520186 1050 P46776 RPL27A 60S ribosomal protein L27a yes yes 0 0 0 0 By MS/MS By MS/MS 4.25 2.83 3 2 1 1 1 1 3 7 5 37.26 37.341 2;3 0.0010431 10629 20211116_3429_TMUAki_TMT10x_P_F2 105.12 86.371 18548000 29137000 312640 28364000 26603000 24665000 19108000 18055000 20157000 16934000 24119000 17271000 27185000 1759700 28555000 25327000 25206000 19806000 18657000 20601000 16584000 23144000 16 16 11 15 16 16 16 16 16 16 16 10016000 15325000 259600 11985000 18070000 18020000 10279000 10104000 10683000 8988900 12765000 9327900 14287000 1146800 12173000 17144000 17808000 10847000 10639000 10925000 8825000 12250000 10 10 8 9 10 10 10 10 10 10 10 8531900 13812000 53039 16378000 8532700 6644500 8828400 7951400 9473700 7944700 11354000 7943300 12898000 612900 16382000 8182800 7398800 8959500 8018200 9676300 7759400 10894000 6 6 3 6 6 6 6 6 6 6 6 3944900000 2590300000 1354600000 21933 1050 20161 114281;114282;114283;114284;114285;114286;114287;114288;114289;114290;114291;114292 138568;138569;138570;138571;138572;138573;138574;138575;138576;138577;138578;138579;138580;138581;138582;138583 138569 16 YHPIDIETSVSR Unmodified 1415.7045 0.70449327 3057 Q9P265 DIP2B Disco-interacting protein 2 homolog B yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 39.668 39.79 3 0.00016517 10485 20211116_3431_TMUAki_TMT10x_P_F4 87.216 66.244 1046500 1470900 5493.3 1772500 1878200 1960000 1380900 1417300 1432100 1238000 1395200 974410 1373600 103530 1789800 1788800 1972900 1428300 1463000 1453400 1216500 1347000 2 2 2 2 2 2 2 2 2 2 2 765000 1040700 338.47 1295200 1622600 1712900 1082500 1086900 1074100 933610 992920 712300 972050 75750 1309600 1542200 1705100 1126000 1132100 1090200 918130 960350 1 1 1 1 1 1 1 1 1 1 1 281460 430190 5154.8 477340 255670 247080 298470 330400 358020 304350 402280 262110 401590 27778 480190 246530 267790 302360 330950 363180 298320 386700 1 1 1 1 1 1 1 1 1 1 1 179100000 151440000 27665000 21934 3057 20162 114293;114294 138584;138585 138584 2 YHPLSSCLTAR Unmodified 1303.6343 0.63430521 2564 Q96T76;Q96T76-9;Q96T76-8;Q96T76-5 MMS19 MMS19 nucleotide excision repair protein homolog yes no 0 0 0 0 By MS/MS 1 0 1 1 34.421 34.421 3 0.00060947 7757 20211116_3428_TMUAki_TMT10x_P_F1 80.737 55.351 278240 433200 2239.6 441180 529050 468520 291840 231880 250180 212290 342150 259080 404250 28668 449920 501450 470290 307140 247120 259600 208140 327210 1 1 1 1 1 1 1 1 1 1 1 278240 433200 2239.6 441180 529050 468520 291840 231880 250180 212290 342150 259080 404250 28668 449920 501450 470290 307140 247120 259600 208140 327210 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42643000 42643000 0 21935 2564 20163 114295 138586 138586 1 YHQIGSGK Unmodified 888.44537 0.44536545 151;152 O14979;O14979-3;O14979-2 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like no no 0 0 0 0 By MS/MS 3 0 1 1 28.924 28.651 3 0.093505 8539 20211116_3441_TMUAki_TMT10x_S_F3 30.564 15.125 611060 970900 8673.5 759880 584430 722620 627680 447540 411480 432330 663870 569030 905170 58372 789550 561990 732280 627730 468450 437030 422860 632600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 611060 970900 8673.5 759880 584430 722620 627680 447540 411480 432330 663870 569030 905170 58372 789550 561990 732280 627730 468450 437030 422860 632600 2 2 2 2 2 2 2 2 2 2 2 6956100 0 6956100 21936 151;152 20164 114296 138587;138588 138587 2 YHSDEYIK Unmodified 1053.4767 0.47672516 2362 Q92769;Q92769-3 HDAC2 Histone deacetylase 2 yes no 0 0 0 0 By MS/MS By MS/MS 3 0.816 1 1 1 2 1 33.449 33.304 3 0.00098551 7750 20211116_3431_TMUAki_TMT10x_P_F4 107.01 66.02 3175200 5247800 12543 5124400 5707100 5779100 3880800 3470200 3930600 3207800 4359200 2956500 4896300 307990 5246200 5426900 5795100 4033500 3636900 4011800 3143700 4191900 4 4 3 4 4 4 4 4 4 4 4 2681100 4414200 5540.3 4289900 5184200 5349000 3320100 2950600 3353200 2737000 3647600 2496400 4118400 260090 4401000 4924100 5330000 3466200 3114600 3420300 2681900 3509600 3 3 2 3 3 3 3 3 3 3 3 494120 833570 7003 834470 522940 430140 560750 519570 577400 470840 711590 460130 777820 47896 845190 502790 465140 567330 522290 591440 461860 682290 1 1 1 1 1 1 1 1 1 1 1 92031000 70506000 21525000 21937 2362 20165 114297;114298;114299 138589;138590;138591;138592 138590 4 YHTEIVFAR Unmodified 1134.5822 0.58219329 497 P05023;P05023-3;P05023-4 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes no 0 0 0 0 By MS/MS By MS/MS 5.11 1.92 1 2 1 2 2 8 1 2 7 12 36.508 36.609 2;3 2.3524E-06 8212 20211116_3445_TMUAki_TMT10x_S_F6 175.51 136.49 12564000 18259000 343730 20598000 15966000 15836000 13322000 11330000 11730000 11321000 15389000 11700000 17046000 1372100 20777000 15261000 16325000 13602000 11747000 12133000 11057000 14732000 28 28 21 28 28 28 28 28 28 28 28 6185500 8448500 104550 9502500 9741500 9969400 6442700 5229000 5297400 4956900 7090600 5760100 7887300 654070 9626700 9263600 10021000 6672100 5547500 5502900 4852300 6784500 9 9 6 9 9 9 9 9 9 9 9 6378200 9810100 239180 11095000 6224400 5866800 6879500 6100900 6432800 6364600 8298900 5940300 9158700 718070 11150000 5997200 6304500 6930100 6199000 6630000 6205100 7947900 19 19 15 19 19 19 19 19 19 19 19 2107600000 1377500000 730100000 21938 497 20166 114300;114301;114302;114303;114304;114305;114306;114307;114308;114309;114310;114311;114312;114313;114314;114315;114316;114317;114318 138593;138594;138595;138596;138597;138598;138599;138600;138601;138602;138603;138604;138605;138606;138607;138608;138609;138610;138611;138612;138613;138614;138615;138616;138617;138618;138619;138620;138621 138614 29 YHTINGHNAEVR Unmodified 1409.68 0.68000985 772 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 0 By MS/MS By MS/MS 4.3 0.781 2 3 5 7 3 24.84 24.764 3;4 6.1689E-08 4449 20211116_3433_TMUAki_TMT10x_P_F5 136.93 110.81 1425600 2297300 39572 1916700 1691500 2456500 1526900 1397500 1455100 1511100 1857400 1327700 2142200 156350 1990300 1620100 2445400 1555200 1477700 1497800 1471100 1779300 8 8 5 8 8 8 8 8 8 8 8 1311500 2105400 35559 1730800 1526400 2322900 1356900 1258800 1312100 1332400 1691300 1221400 1963100 144380 1801000 1461500 2306000 1383900 1335800 1350300 1298200 1619800 6 6 4 6 6 6 6 6 6 6 6 114120 191960 4013.3 185900 165060 133560 169990 138700 143030 178720 166090 106290 179090 11968 189300 158640 139410 171330 141960 147510 172900 159500 2 2 1 2 2 2 2 2 2 2 2 134300000 107210000 27093000 21939 772 20167 114319;114320;114321;114322;114323;114324;114325;114326;114327;114328 138622;138623;138624;138625;138626;138627;138628;138629;138630 138625 9 YHTINGHNCEVK Unmodified 1470.6674 0.66739625 1168;1169 P51991;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 0 0 By MS/MS 5 0 2 2 28.603 28.533 3;4 3.9768E-12 6124 20211116_3433_TMUAki_TMT10x_P_F5 168.61 151.39 426380 726780 8495.3 635740 710330 913790 481380 608790 533980 556080 537140 397070 677820 47244 659150 675850 906900 501880 632790 541050 545270 518060 3 3 3 3 3 3 3 3 3 3 3 426380 726780 8495.3 635740 710330 913790 481380 608790 533980 556080 537140 397070 677820 47244 659150 675850 906900 501880 632790 541050 545270 518060 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25446000 25446000 0 21940 1168;1169 20168 114329;114330 138631;138632;138633 138633 3 YHTSQSGDEMTSLSEYVSR Oxidation (M) 2191.9328 0.93279124 553 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 1 0 By MS/MS By MS/MS 4.72 1.81 1 3 4 8 4 6 4 2 17 15 35.936 36 3;4 1.3691E-50 10328 20211116_3433_TMUAki_TMT10x_P_F5 221.47 209.51 11355000 17563000 183010 24196000 20952000 18931000 12647000 14353000 17414000 13805000 16097000 10573000 16413000 1028500 24137000 19884000 19507000 13410000 14807000 17460000 13506000 15569000 42 42 23 42 42 42 42 42 42 42 42 5761900 8766800 100670 12030000 16532000 14862000 8771000 6805500 8228000 6356700 7408900 5364900 8192600 618660 12084000 15657000 14785000 9285800 7312500 8365300 6226800 7172500 20 20 11 20 20 20 20 20 20 20 20 5593500 8796300 82332 12166000 4420100 4068400 3876000 7547200 9185500 7448600 8688400 5208400 8220500 409890 12052000 4227500 4722300 4124400 7494900 9094700 7278800 8396800 22 22 12 22 22 22 22 22 22 22 22 5369000000 3805200000 1563800000 21941 553 20169 114331;114332;114333;114334;114335;114336;114337;114338;114339;114340;114341;114342;114343;114344;114345;114346;114347;114348;114349;114350;114351;114352;114353;114354;114355;114356;114357;114358;114359;114360;114361;114362 138634;138635;138636;138637;138638;138639;138640;138641;138642;138643;138644;138645;138646;138647;138648;138649;138650;138651;138652;138653;138654;138655;138656;138657;138658;138659;138660;138661;138662;138663;138664;138665;138666;138667;138668;138669;138670;138671;138672;138673;138674;138675;138676;138677;138678;138679;138680 138642 512 47 YHTSQSGDEMTSLSEYVSR Unmodified 2175.9379 0.93787661 553 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 0 By MS/MS By MS/MS 5.14 0.99 4 6 2 2 8 6 45.048 45.231 3;4 9.1643E-64 14800 20211116_3435_TMUAki_TMT10x_P_F7 265.22 249.98 25328000 39055000 88071 47647000 37157000 37569000 28123000 21404000 22084000 22183000 29715000 23580000 36474000 1700500 47850000 35372000 38531000 28811000 22601000 23001000 21633000 28428000 15 15 3 15 15 15 15 15 15 15 15 16144000 24000000 78776 29839000 28172000 30890000 20456000 13228000 14357000 14304000 18704000 15029000 22416000 1043500 30044000 26797000 31007000 20964000 14372000 15027000 13926000 17909000 9 9 2 9 9 9 9 9 9 9 9 9184200 15055000 9295.2 17808000 8985300 6679200 7666900 8176700 7726900 7878300 11010000 8550600 14058000 656970 17807000 8575800 7524500 7847700 8229000 7974600 7706700 10520000 6 6 1 6 6 6 6 6 6 6 6 8265000000 5103700000 3161300000 21942 553 20169 114363;114364;114365;114366;114367;114368;114369;114370;114371;114372;114373;114374;114375;114376 138681;138682;138683;138684;138685;138686;138687;138688;138689;138690;138691;138692;138693;138694;138695;138696 138689 16 YHTVNGHNCEVR Unmodified 1484.6579 0.6578942 583 P09651;P09651-2;P09651-3 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes no 0 0 0 0 By MS/MS 3 0 1 1 25.3 24.999 3 2.5229E-06 7067 20211116_3441_TMUAki_TMT10x_S_F3 114.24 106.02 43815 58601 0 67067 52287 31978 51464 29765 34645 34929 44696 40796 54713 0 67297 50115 34692 51725 30530 36338 33900 42806 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 43815 58601 0 67067 52287 31978 51464 29765 34645 34929 44696 40796 54713 0 67297 50115 34692 51725 30530 36338 33900 42806 2 2 0 2 2 2 2 2 2 2 2 2900100 0 2900100 21943 583 20170 114377 138697;138698 138697 2 YHVLVNLGK Unmodified 1041.5971 0.59711507 352 O75643;O75643-2 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 47.606 47.42 3 0.0094139 14976 20211116_3430_TMUAki_TMT10x_P_F3 60.91 30.021 2013100 3485000 57017 4203300 2820400 2946900 2310700 2519700 2722400 2583600 2992200 1874800 3254600 231350 4218500 2695000 3070000 2383300 2585300 2761200 2520700 2878100 2 2 2 2 2 2 2 2 2 2 2 666620 1075800 20620 1310900 1533600 1579600 934330 830580 896620 861810 910140 620840 1004700 86627 1324800 1456600 1575700 977900 883210 914290 840400 877560 1 1 1 1 1 1 1 1 1 1 1 1346500 2409200 36396 2892300 1286900 1367300 1376400 1689100 1825800 1721800 2082100 1254000 2249800 144720 2893700 1238400 1494200 1405400 1702100 1846900 1680300 2000600 1 1 1 1 1 1 1 1 1 1 1 123760000 65929000 57830000 21944 352 20171 114378;114379 138699;138700 138699 2 YHVPVVVVPEGSASDTHEQAILR Unmodified 2502.2867 0.28668655 495 P04844;P04844-2 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS 5.71 1.03 1 2 2 2 4 3 50.293 50.567 4 9.5012E-21 15606 20211116_3435_TMUAki_TMT10x_P_F7 147.53 136.72 14096000 24042000 297860 25496000 21626000 28229000 17978000 21937000 21226000 18523000 21283000 13126000 22440000 1376400 25948000 20658000 28448000 18527000 22520000 21454000 18232000 20529000 11 11 8 11 11 11 11 11 11 11 11 8729700 14437000 92699 15536000 16193000 22543000 13368000 13063000 12732000 11304000 13015000 8128300 13475000 739380 15877000 15456000 22320000 13687000 13708000 12991000 11113000 12547000 7 7 4 7 7 7 7 7 7 7 7 5366300 9605700 205160 9959200 5433200 5686800 4610300 8874200 8493900 7219000 8267600 4998000 8964500 637040 10071000 5201300 6128500 4839700 8812300 8463100 7118700 7982500 4 4 4 4 4 4 4 4 4 4 4 3542200000 2229400000 1312800000 21945 495 20172 114380;114381;114382;114383;114384;114385;114386 138701;138702;138703;138704;138705;138706;138707;138708;138709;138710;138711 138706 11 YIAENGTDPINNQPLSEEQLIDIK Unmodified 2713.3447 0.34465494 3182 Q9UMS4 PRPF19 Pre-mRNA-processing factor 19 yes yes 0 0 0 0 By MS/MS By MS/MS 2.33 0.943 2 3 3 1 4 5 77.008 76.939 3;4 2.9296E-29 28011 20211116_3441_TMUAki_TMT10x_S_F3 164.65 144.56 38750000 64494000 444640 59144000 42602000 67145000 48373000 48037000 45395000 48262000 51099000 36083000 60160000 3363600 60834000 41016000 67480000 48673000 49812000 46515000 47126000 49117000 10 10 7 10 10 10 10 10 10 10 10 24444000 38984000 324390 36512000 24653000 49113000 30515000 31484000 29793000 31334000 32179000 22762000 36367000 2014400 37611000 23800000 48860000 30624000 32896000 30425000 30609000 30968000 6 6 3 6 6 6 6 6 6 6 6 14306000 25510000 120250 22632000 17949000 18031000 17859000 16553000 15603000 16928000 18921000 13322000 23793000 1349200 23223000 17216000 18620000 18050000 16916000 16089000 16517000 18149000 4 4 4 4 4 4 4 4 4 4 4 10276000000 5714400000 4561800000 21946 3182 20173 114387;114388;114389;114390;114391;114392;114393;114394;114395 138712;138713;138714;138715;138716;138717;138718;138719;138720;138721 138718 10 YIAIASTTVETTDPEK Unmodified 1737.8673 0.86726108 884 P31150 GDI1 Rab GDP dissociation inhibitor alpha yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 59.456 59.465 3 0.013723 18777 20211116_3442_TMUAki_TMT10x_S_F4 45.723 32.523 8991600 13804000 136030 15048000 9026800 12061000 8848700 10167000 10559000 9877000 11182000 8373000 12885000 864930 15219000 8658600 12429000 9037800 10424000 10689000 9658300 10767000 3 3 2 3 3 3 3 3 3 3 3 3881600 5636600 0 6315400 4453000 7150000 4162900 4352000 4323800 4486800 4542900 3614100 5262100 322010 6407300 4262000 7169600 4242800 4570100 4399500 4376500 4375600 1 1 0 1 1 1 1 1 1 1 1 5110000 8167100 136030 8732400 4573800 4911300 4685800 5814800 6234800 5390100 6638700 4759000 7622900 542920 8811400 4396600 5259300 4795100 5853800 6289400 5281800 6391600 2 2 2 2 2 2 2 2 2 2 2 797600000 507110000 290490000 21947 884 20174 114396;114397 138722;138723;138724 138723 3 YIAIASTTVETTDPEKEVEPALELLEPIDQK Unmodified 3441.7654 0.76542835 884 P31150 GDI1 Rab GDP dissociation inhibitor alpha yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 79.742 79.72 4 2.1047E-20 26369 20211116_3440_TMUAki_TMT10x_S_F2 131.38 120.37 5668700 9148000 108870 7740000 7719900 9140700 8238600 6777900 5847500 7011300 7571200 5278800 8530800 591710 8016500 7421300 9172500 8255600 7017500 6114600 6838000 7250300 3 3 2 3 3 3 3 3 3 3 3 2000700 2939200 69747 2706700 1896200 4319300 2770300 2646600 2323300 2944000 2612500 1863300 2741700 229410 2801900 1844400 4263200 2750500 2784200 2393400 2863000 2511200 1 1 1 1 1 1 1 1 1 1 1 3668000 6208800 39127 5033300 5823700 4821500 5468400 4131200 3524200 4067300 4958800 3415500 5789100 362300 5214600 5576900 4909300 5505200 4233300 3721200 3974900 4739100 2 2 1 2 2 2 2 2 2 2 2 6498700000 4433000000 2065700000 21948 884 20175 114398;114399;114400;114401 138725;138726;138727 138727 3 YIAIVSTTVETKEPEK Unmodified 1806.9615 0.96149581 1133 P50395;P50395-2 GDI2 Rab GDP dissociation inhibitor beta yes no 0 0 0 1 By MS/MS By MS/MS 6.11 1.37 3 4 4 4 4 9 10 59.083 59.267 3;4 1.7859E-36 18198 20211116_3431_TMUAki_TMT10x_P_F4 217.37 184.64 238240000 380440000 2029100 437380000 310530000 290650000 239930000 190200000 187710000 196460000 265350000 221840000 355210000 21765000 439990000 296040000 302890000 245450000 198640000 196010000 191620000 253570000 27 27 17 27 27 27 27 27 27 27 27 113790000 176940000 1157500 200370000 175800000 200620000 123950000 89603000 89316000 96217000 122210000 105950000 165190000 10854000 202760000 167300000 201870000 127370000 96903000 93547000 93698000 116870000 12 12 7 12 12 12 12 12 12 12 12 124450000 203500000 871680 237010000 134730000 90024000 115980000 100600000 98398000 100240000 143150000 115880000 190010000 10911000 237220000 128750000 101010000 118080000 101740000 102460000 97917000 136700000 15 15 10 15 15 15 15 15 15 15 15 32423000000 17826000000 14597000000 21949 1133 20176 114402;114403;114404;114405;114406;114407;114408;114409;114410;114411;114412;114413;114414;114415;114416;114417;114418;114419;114420 138728;138729;138730;138731;138732;138733;138734;138735;138736;138737;138738;138739;138740;138741;138742;138743;138744;138745;138746;138747;138748;138749;138750;138751;138752;138753;138754 138728 27 YIANLGHGLYPDMDPEHVGAFVDAVHK Oxidation (M) 2980.4178 0.41777708 512 P06132 UROD Uroporphyrinogen decarboxylase yes yes 0 0 1 0 By matching By MS/MS 6 0 2 1 1 64.177 64.164 5 3.3052E-18 19650 20211116_3445_TMUAki_TMT10x_S_F6 136.4 122.81 7126100 12432000 62207 11860000 9810000 8449200 8336300 9608700 8794900 8881600 9564200 6634800 11598000 597310 12089000 9367200 8843900 8547200 9689200 8954500 8704200 9202500 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7126100 12432000 62207 11860000 9810000 8449200 8336300 9608700 8794900 8881600 9564200 6634800 11598000 597310 12089000 9367200 8843900 8547200 9689200 8954500 8704200 9202500 3 3 1 3 3 3 3 3 3 3 3 1386300000 876240000 510090000 21950 512 20177 114421;114422 138755;138756;138757 138755 416 3 YIANTVELR Unmodified 1077.5819 0.58185893 495 P04844;P04844-2 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 45.775 45.935 2 6.1134E-06 11911 20211116_3444_TMUAki_TMT10x_S_F5 162.59 114.74 8037800 13138000 167440 15806000 12025000 11703000 8752300 10442000 9840100 9202100 11781000 7485200 12269000 876380 15875000 11458000 12147000 9082600 10644000 10032000 9038300 11305000 3 3 2 3 3 3 3 3 3 3 3 3105600 4783400 60649 5833500 7309800 6993100 4262000 3902400 3532100 3265700 4519600 2892100 4467400 372880 5894300 6936000 6983100 4459900 4104600 3660300 3215600 4329300 1 1 1 1 1 1 1 1 1 1 1 4932200 8354400 106790 9972300 4715000 4709600 4490300 6540100 6308000 5936400 7261400 4593100 7801600 503500 9980400 4521700 5163600 4622700 6539100 6371600 5822700 6975300 2 2 1 2 2 2 2 2 2 2 2 403410000 129150000 274260000 21951 495 20178 114423;114424;114425;114426 138758;138759;138760;138761 138761 4 YIASVQGSTPSPR Unmodified 1361.6939 0.69392858 1122 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 2 1 36.818 37.281 2;3 3.3379E-41 10235 20211116_3435_TMUAki_TMT10x_P_F7 247.3 210.91 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21952 1122 20179 114427;114428;114429 138762;138763;138764 138763 3 YICDNQDTISSK Unmodified 1442.6348 0.63475872 38 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 42.58 42.714 3 2.4402E-07 11910 20211116_3442_TMUAki_TMT10x_S_F4 123.64 68.187 + 1424600 2080900 9951.6 2338200 3178900 2127300 1833300 2360200 2893300 2034700 2305000 1326600 1942600 151960 2364100 3014900 2185400 1962800 2378200 2876100 2000600 2241800 3 3 3 3 3 3 3 3 3 3 3 697930 983740 7601.3 1116000 2390600 1579900 1183400 1120400 1372500 944540 1112700 649900 918430 88655 1136100 2262300 1570600 1269400 1157100 1378800 929730 1081400 2 2 2 2 2 2 2 2 2 2 2 726710 1097100 2350.4 1222200 788330 547350 649880 1239800 1520700 1090100 1192300 676660 1024200 63303 1227900 752550 614800 693400 1221100 1497300 1070900 1160400 1 1 1 1 1 1 1 1 1 1 1 107170000 34793000 72379000 21953 38 20180 114430;114431 138765;138766;138767 138767 3 YIDQEELNK Unmodified 1150.5506 0.55061839 553;544;1914 P07900;P07900-2;Q14568;P08238;Q58FF8 HSP90AA1;HSP90AA2P;HSP90AB1;HSP90AB2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 no no 0 0 0 0 By MS/MS By MS/MS 3 1.05 1 2 2 4 5 4 45.892 45.893 2;3 1.8696E-07 14269 20211116_3430_TMUAki_TMT10x_P_F3 203.19 133.28 39818000 66286000 129930 66246000 87413000 53174000 48882000 36775000 42951000 33013000 54711000 37073000 61852000 3812800 67389000 82837000 54608000 51414000 38105000 44372000 32397000 52413000 9 9 4 9 9 9 9 9 9 9 9 21019000 33667000 17638 33667000 64352000 35894000 24152000 19254000 23288000 18023000 28667000 19571000 31415000 2306500 34379000 60691000 36055000 26574000 20379000 23920000 17653000 27487000 4 4 1 4 4 4 4 4 4 4 4 18798000 32619000 112300 32579000 23061000 17280000 24729000 17521000 19664000 14991000 26044000 17502000 30436000 1506300 33010000 22146000 18553000 24840000 17726000 20452000 14745000 24926000 5 5 3 5 5 5 5 5 5 5 5 3169700000 1984800000 1184900000 21954 544;553;1914 20181 114432;114433;114434;114435;114436;114437;114438;114439;114440 138768;138769;138770;138771;138772;138773;138774;138775;138776;138777 138770 10 YIDSADLEPITSQEEPVR Unmodified 2060.9902 0.99022976 709 P17812;P17812-2 CTPS1 CTP synthase 1 yes no 0 0 0 0 By MS/MS By MS/MS 1.88 0.781 3 3 2 5 3 63.21 62.974 2;3 1.8453E-78 20885 20211116_3429_TMUAki_TMT10x_P_F2 282.62 248.76 14977000 26058000 177320 23936000 17551000 20953000 16928000 18787000 17870000 18365000 20592000 13946000 24307000 1382300 24524000 16820000 21481000 17232000 19198000 18235000 17954000 19780000 6 6 2 6 6 6 6 6 6 6 6 4790800 8093400 177320 7927300 5686800 10614000 6909900 6606000 5850400 5876100 7028500 4462100 7551400 575000 8139100 5494300 10557000 6912300 6897000 6040000 5769000 6743600 2 2 2 2 2 2 2 2 2 2 2 10186000 17964000 0 16009000 11864000 10339000 10018000 12181000 12020000 12489000 13563000 9483500 16755000 807290 16385000 11325000 10924000 10320000 12301000 12195000 12185000 13036000 4 4 0 4 4 4 4 4 4 4 4 2813100000 883680000 1929400000 21955 709 20182 114441;114442;114443;114444;114445;114446;114447;114448 138778;138779;138780;138781;138782;138783;138784;138785;138786;138787 138782 10 YIDSADLEPITSQEEPVRYHEAWQK Unmodified 3003.425 0.42503053 709 P17812;P17812-2 CTPS1 CTP synthase 1 yes no 0 0 0 1 By MS/MS 3.5 0.5 1 1 2 60.964 60.893 4 1.0833E-07 18815 20211116_3431_TMUAki_TMT10x_P_F4 89.946 78.161 10592000 20113000 352220 20392000 18286000 23102000 16605000 10304000 10675000 10509000 12686000 9865000 18769000 1296700 20824000 17511000 23080000 16748000 11128000 11191000 10255000 12175000 2 2 1 2 2 2 2 2 2 2 2 10592000 20113000 352220 20392000 18286000 23102000 16605000 10304000 10675000 10509000 12686000 9865000 18769000 1296700 20824000 17511000 23080000 16748000 11128000 11191000 10255000 12175000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1469500000 1469500000 0 21956 709 20183 114449;114450 138788;138789 138788 2 YIEACAR Unmodified 881.40654 0.40653711 283 O60701;O60701-3 UGDH UDP-glucose 6-dehydrogenase yes no 0 0 0 0 By MS/MS 3 0 1 1 32.548 32.303 2 0.007649 9940 20211116_3441_TMUAki_TMT10x_S_F3 124.12 104.2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21957 283 20184 114451 138790 138790 1 YIEIFPSRR Unmodified 1179.64 0.64004252 1569 Q12849;Q12849-5 GRSF1 G-rich sequence factor 1 yes no 0 0 0 1 By MS/MS 2 0 1 1 47.228 47.156 3 0.001232 13121 20211116_3440_TMUAki_TMT10x_S_F2 79.16 48.935 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21958 1569 20185 114452 138791 138791 1 YIESPVLFLR Unmodified 1235.6914 0.69140938 1688 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 75.116 75.073 2 9.0546E-11 24354 20211116_3436_TMUAki_TMT10x_P_F8 201.57 127.31 12532000 20109000 190750 19981000 13836000 21400000 15687000 14219000 12578000 14216000 15373000 11670000 18763000 1211000 20414000 13323000 21552000 15718000 14819000 13031000 13884000 14743000 3 3 2 3 3 3 3 3 3 3 3 9440600 14744000 136030 14849000 9979500 17839000 11590000 10706000 9141500 10479000 11301000 8790900 13758000 892950 15185000 9616000 17829000 11596000 11239000 9483700 10243000 10835000 2 2 1 2 2 2 2 2 2 2 2 3091200 5364600 54727 5132400 3856400 3560800 4096700 3512400 3436200 3736800 4072000 2878600 5004900 318000 5228800 3707000 3723400 4122400 3580300 3547200 3640400 3908500 1 1 1 1 1 1 1 1 1 1 1 1152900000 674250000 478650000 21959 1688 20186 114453;114454 138792;138793;138794 138792 3 YIETSELCGGAR Unmodified 1354.6187 0.61871473 87 O00429;O00429-2;O00429-4;O00429-3;O00429-5;O00429-9;O00429-8;O00429-6;O00429-7 DNM1L Dynamin-1-like protein yes no 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 43.705 43.746 2 2.1321E-16 13424 20211116_3430_TMUAki_TMT10x_P_F3 204.52 183.78 753960 1053700 1974.4 1542600 2583200 1934300 1065200 806050 946480 711910 1107000 702030 985070 89968 1545000 2438900 1921000 1156200 873660 973770 699160 1062900 1 1 1 1 1 1 1 1 1 1 1 753960 1053700 1974.4 1542600 2583200 1934300 1065200 806050 946480 711910 1107000 702030 985070 89968 1545000 2438900 1921000 1156200 873660 973770 699160 1062900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 71100000 71100000 0 21960 87 20187 114455;114456 138795;138796 138795 2 YIFDLFYK Unmodified 1107.5641 0.56408361 996 P41223;P41223-2 BUD31 Protein BUD31 homolog yes no 0 0 0 0 By MS/MS 2 0 1 1 80.364 80.348 2 0.015616 27873 20211116_3429_TMUAki_TMT10x_P_F2 73.26 40.139 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21961 996 20188 114457 138797 138797 1 YIFDNVAK Unmodified 968.49673 0.49673232 1787 Q15293;Q15293-2 RCN1 Reticulocalbin-1 yes no 0 0 0 0 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 56.149 56.594 2 0.0032559 17943 20211116_3435_TMUAki_TMT10x_P_F7 101.54 67.991 19796000 29775000 33461 34914000 35129000 36672000 26199000 26932000 28107000 24813000 28393000 18432000 27803000 1853200 35281000 33458000 37032000 27100000 27810000 28521000 24321000 27381000 3 3 2 3 3 3 3 3 3 3 3 12282000 18822000 23777 21460000 27961000 30438000 20083000 16240000 17371000 14522000 17253000 11435000 17573000 1226100 21840000 26611000 30135000 20699000 17177000 17787000 14254000 16647000 2 2 1 2 2 2 2 2 2 2 2 7513900 10954000 9683.9 13454000 7168200 6234800 6115300 10692000 10736000 10291000 11140000 6996200 10230000 627140 13441000 6847300 6897100 6401100 10634000 10734000 10067000 10734000 1 1 1 1 1 1 1 1 1 1 1 1790100000 1138600000 651490000 21962 1787 20189 114458;114459;114460;114461 138798;138799;138800;138801 138799 4 YIFTMLSSLAR Unmodified 1300.6849 0.6849438 625 P11388;P11388-2;P11388-3;P11388-4 TOP2A DNA topoisomerase 2-alpha yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 80.789 80.79 2 2.2903E-06 26146 20211116_3447_TMUAki_TMT10x_S_F8 128.27 96.049 3097200 5187700 14399 4945700 3032500 3387200 3213700 2276700 1903300 2567900 3105200 2883900 4839800 269300 5039200 2913100 3521800 3209700 2379600 2036200 2496000 2958300 2 2 2 2 2 2 2 2 2 2 2 1101700 1693300 11419 1647500 951500 1827600 1141900 927780 799560 1003400 1178600 1025900 1579800 99880 1686700 917820 1830500 1137800 990980 841840 976870 1125200 1 1 1 1 1 1 1 1 1 1 1 1995500 3494400 2979.9 3298100 2081000 1559600 2071700 1349000 1103700 1564500 1926600 1858000 3259900 169420 3352500 1995300 1691300 2072000 1388600 1194400 1519100 1833100 1 1 1 1 1 1 1 1 1 1 1 571520000 263690000 307830000 21963 625 20190 114462;114463 138802;138803 138803 2 YIGEVGDIVVGR Unmodified 1275.6823 0.68230126 1667 Q13868;Q13868-3;Q13868-2 EXOSC2 Exosome complex component RRP4 yes no 0 0 0 0 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 62.867 62.849 2 1.6063E-05 19664 20211116_3431_TMUAki_TMT10x_P_F4 102.95 75.213 8176400 14064000 277.21 13223000 10845000 15892000 10666000 13728000 13391000 13004000 12096000 7612400 13120000 633650 13589000 10389000 15977000 10913000 14045000 13457000 12730000 11708000 2 2 1 2 2 2 2 2 2 2 2 4300800 7371700 0 6794100 5902900 11589000 6397700 7203500 6834900 6912100 6112000 4003800 6876400 297140 7043600 5667100 11412000 6477100 7536700 6908600 6762700 5918400 1 1 0 1 1 1 1 1 1 1 1 3875700 6692700 277.21 6429100 4941900 4303100 4268600 6524200 6555700 6092000 5983500 3608600 6244100 336510 6545600 4721600 4564700 4435800 6508300 6548900 5967600 5789800 1 1 1 1 1 1 1 1 1 1 1 998270000 633340000 364930000 21964 1667 20191 114464;114465;114466;114467 138804;138805;138806;138807 138805 4 YIHLENLLAR Unmodified 1240.6928 0.69280637 1881 Q2TAY7 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 2.87 2 2 2 2 4 58.659 58.612 3 5.9441E-10 17512 20211116_3436_TMUAki_TMT10x_P_F8 185.6 160.21 8356200 14085000 225060 14990000 11456000 14528000 10179000 10760000 10574000 10700000 11400000 7782200 13146000 945950 15222000 10966000 14744000 10404000 11128000 10770000 10453000 10971000 6 6 6 6 6 6 6 6 6 6 6 4393800 7270400 162580 7604700 7033900 10452000 6140500 5565300 5558200 5714800 5810600 4092300 6785300 552770 7777000 6731800 10362000 6257200 5909500 5689000 5575300 5597400 3 3 3 3 3 3 3 3 3 3 3 3962400 6814100 62481 7385600 4422000 4076800 4038800 5194500 5016100 4985200 5589100 3689900 6360400 393180 7444700 4234200 4382400 4147000 5218800 5080600 4877500 5373900 3 3 3 3 3 3 3 3 3 3 3 4747800000 2425700000 2322100000 21965 1881 20192 114468;114469;114470;114471;114472;114473 138808;138809;138810;138811;138812;138813;138814 138810 7 YIHPDDELVLEDELQR Unmodified 1982.9585 0.9585357 1086 P49005 POLD2 DNA polymerase delta subunit 2 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 61.276 61.133 3 1.7948E-11 20610 20211116_3439_TMUAki_TMT10x_S_F1 138.87 118.21 10173000 16959000 32373 16877000 13419000 18622000 13484000 11315000 11755000 12394000 13984000 9471400 15825000 794960 17249000 12862000 18699000 13621000 11905000 12114000 12061000 13421000 3 3 1 3 3 3 3 3 3 3 3 7464500 11926000 0 12269000 9931800 15439000 9867500 8007200 8272100 8928200 10132000 6949200 11130000 529320 12540000 9513400 15366000 9963000 8543800 8551300 8681800 9716600 2 2 0 2 2 2 2 2 2 2 2 2708600 5033200 32373 4607300 3487400 3182700 3616700 3307400 3483100 3466100 3852000 2522200 4695000 265640 4709000 3349100 3333000 3657700 3361200 3562400 3378700 3704400 1 1 1 1 1 1 1 1 1 1 1 1626400000 954790000 671600000 21966 1086 20193 114474;114475 138815;138816;138817 138817 3 YIIEELNVR Unmodified 1147.6237 0.62372375 1002 P41252 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 61.549 61.609 2 0.0013143 19133 20211116_3431_TMUAki_TMT10x_P_F4 99.7 18.058 26887000 42522000 525240 44526000 34725000 45077000 31855000 36342000 34450000 36234000 35648000 25038000 39685000 2739000 45290000 33250000 45691000 32542000 37387000 34976000 35392000 34351000 4 4 3 4 4 4 4 4 4 4 4 14854000 22428000 39688 23183000 19631000 32393000 19139000 19764000 17921000 19281000 18953000 13830000 20931000 1246000 23734000 18808000 32148000 19402000 20717000 18322000 18851000 18252000 2 2 1 2 2 2 2 2 2 2 2 12033000 20094000 485550 21343000 15094000 12684000 12716000 16578000 16529000 16953000 16695000 11208000 18755000 1493000 21556000 14442000 13543000 13140000 16670000 16655000 16541000 16100000 2 2 2 2 2 2 2 2 2 2 2 2465600000 1379700000 1085900000 21967 1002 20194 114476;114477;114478;114479 138818;138819;138820;138821 138818 4 YIIHKYPSLELER Unmodified 1659.8984 0.89844205 1930 Q5SSJ5;Q5SSJ5-2;Q5SSJ5-3 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 49.077 49.074 4 1.1639E-11 13779 20211116_3436_TMUAki_TMT10x_P_F8 150.22 124.89 2334800 3680400 35170 4068500 3888200 4345100 2695000 4640800 3761100 3552400 3416600 2174200 3435600 248100 4127300 3700300 4416100 2829000 4671000 3767400 3514300 3306500 2 2 2 2 2 2 2 2 2 2 2 1062200 1747100 33712 1967700 2586400 3107900 1599500 2091600 1806900 1692800 1488300 989220 1631000 140830 2008800 2457200 3072900 1680400 2166000 1817800 1669700 1445600 1 1 1 1 1 1 1 1 1 1 1 1272600 1933300 1458.1 2100900 1301800 1237200 1095500 2549200 1954200 1859600 1928300 1184900 1804600 107280 2118500 1243100 1343200 1148600 2505000 1949600 1844600 1860900 1 1 1 1 1 1 1 1 1 1 1 510480000 295180000 215310000 21968 1930 20195 114480;114481 138822;138823 138822 2 YIIIGDMGVGK Oxidation (M) 1180.6162 0.61619553 1295 P61106 RAB14 Ras-related protein Rab-14 yes yes 0 0 1 0 By MS/MS 7 0 1 1 59.163 59.894 2 0.1102 19319 20211116_3435_TMUAki_TMT10x_P_F7 49.442 34.291 3127100 5053300 0 5047000 5430700 7862600 4618800 4397900 4141100 4445100 4478800 2911400 4715200 254600 5191300 5184400 7758400 4712700 4647800 4245800 4339400 4310100 1 1 0 1 1 1 1 1 1 1 1 3127100 5053300 0 5047000 5430700 7862600 4618800 4397900 4141100 4445100 4478800 2911400 4715200 254600 5191300 5184400 7758400 4712700 4647800 4245800 4339400 4310100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 411570000 411570000 0 21969 1295 20196 114482 138824 138824 1745 1 YIIIGDMGVGK Unmodified 1164.6213 0.62128091 1295 P61106 RAB14 Ras-related protein Rab-14 yes yes 0 0 0 0 By MS/MS 8 0 1 1 70.183 70.264 2 2.8846E-14 22392 20211116_3436_TMUAki_TMT10x_P_F8 157.96 89.221 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21970 1295 20196 114483 138825 138825 1 YIIIGDTGVGK Unmodified 1134.6285 0.62847478 1287;2297 P61019;Q8WUD1 RAB2A;RAB2B Ras-related protein Rab-2A;Ras-related protein Rab-2B no no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 60.813 61.416 2 4.3473E-19 20472 20211116_3446_TMUAki_TMT10x_S_F7 233.46 167.19 12273000 20021000 0 23299000 18859000 19861000 13257000 14737000 10771000 13471000 16449000 11426000 18694000 991550 23486000 17935000 20330000 13663000 15204000 11268000 13209000 15692000 2 2 0 2 2 2 2 2 2 2 2 6195700 9811000 0 11512000 12361000 14945000 8263200 7192600 5401700 6997500 8397400 5768300 9161100 533160 11675000 11745000 14839000 8507400 7698300 5726900 6842100 8007900 1 1 0 1 1 1 1 1 1 1 1 6077000 10210000 0 11787000 6498200 4916100 4993400 7544400 5369200 6474000 8051200 5657900 9532900 458390 11811000 6189600 5491100 5155300 7505900 5540900 6367000 7683700 1 1 0 1 1 1 1 1 1 1 1 1312900000 754460000 558480000 21971 1287;2297 20197 114484;114485;114486 138826;138827;138828 138828 3 YILAATLDNTLK Unmodified 1334.7446 0.74456717 1326 P61964 WDR5 WD repeat-containing protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 5.67 3.3 2 4 3 3 75.368 75.326 2;3 1.9782E-24 24444 20211116_3436_TMUAki_TMT10x_P_F8 253.29 205 16538000 26173000 115300 24295000 17894000 22846000 18123000 16498000 15585000 17698000 18827000 15398000 24415000 1335300 24896000 17160000 23221000 18292000 17131000 16082000 17236000 18061000 5 5 2 5 5 5 5 5 5 5 5 8090800 12461000 0 11744000 7744500 14336000 9124800 7927800 7560700 8852600 9037000 7532500 11625000 571050 12070000 7454300 14301000 9135000 8411500 7812600 8607800 8671900 2 2 0 2 2 2 2 2 2 2 2 8446900 13712000 115300 12551000 10150000 8510300 8998300 8570600 8024600 8845600 9790000 7865200 12790000 764260 12826000 9705900 8920300 9157400 8719200 8269000 8627800 9389400 3 3 2 3 3 3 3 3 3 3 3 1874000000 1007300000 866640000 21972 1326 20198 114487;114488;114489;114490;114491;114492 138829;138830;138831;138832;138833;138834;138835 138830 7 YILPDEPAIIVHPNWAAK Unmodified 2046.0938 0.093847391 2152 Q8IX12;Q8IX12-2 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 0 0 0 0 By MS/MS 7.67 0.471 1 2 3 72.748 72.882 3 9.6299E-11 23513 20211116_3436_TMUAki_TMT10x_P_F8 120.7 104.31 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21973 2152 20199 114493;114494;114495 138836;138837;138838 138838 3 YILVTGGVISGIGK Unmodified 1375.8075 0.80750177 709;2926 P17812;Q9NRF8 CTPS1;CTPS2 CTP synthase 1;CTP synthase 2 no no 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 4 1 75.268 75.26 2;3 2.5465E-53 24695 20211116_3431_TMUAki_TMT10x_P_F4 280.19 246.39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21974 709;2926 20200 114496;114497;114498;114499;114500 138839;138840;138841;138842;138843 138841 5 YIMLNPSSR Oxidation (M) 1095.5383 0.53827956 624 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 1 0 By MS/MS 8 0 1 1 41.688 41.903 2 0.010857 10887 20211116_3436_TMUAki_TMT10x_P_F8 74.301 52.773 800240 1256900 7284.2 1509700 2142300 2086400 1185000 1208500 1215200 1043000 1269700 745160 1173800 91930 1530900 2030500 2070100 1253000 1268000 1236900 1025500 1223100 1 1 1 1 1 1 1 1 1 1 1 800240 1256900 7284.2 1509700 2142300 2086400 1185000 1208500 1215200 1043000 1269700 745160 1173800 91930 1530900 2030500 2070100 1253000 1268000 1236900 1025500 1223100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 98496000 98496000 0 21975 624 20201 114501 138844 138844 641 1 YIMVPSGNMGVFDPTEIHNR 2 Oxidation (M) 2308.0616 0.061637339 3042 Q9P003 CNIH4 Protein cornichon homolog 4 yes yes 0 0 2 0 By MS/MS 6.5 0.5 1 1 2 58.589 58.87 3 1.2179E-06 17473 20211116_3445_TMUAki_TMT10x_S_F6 87.676 76.561 1263900 2440200 0 1980100 1669000 1676000 1441200 3188800 2591800 2516100 2115000 1176600 2275200 92079 2048000 1593400 1760100 1509400 3145600 2569500 2485000 2055000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1263900 2440200 0 1980100 1669000 1676000 1441200 3188800 2591800 2516100 2115000 1176600 2275200 92079 2048000 1593400 1760100 1509400 3145600 2569500 2485000 2055000 1 1 0 1 1 1 1 1 1 1 1 801110000 0 801110000 21976 3042 20202 114502;114503 138845 138845 3089;3090 1 YINENLIVNTDELGR Unmodified 1761.8897 0.88972785 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 By MS/MS By MS/MS 3.8 0.748 4 4 2 5 5 66.972 66.82 2;3 4.5609E-72 21701 20211116_3442_TMUAki_TMT10x_S_F4 323.54 184.22 35503000 56267000 43149 57128000 37162000 49044000 40736000 32656000 32935000 36837000 42731000 33053000 52506000 2507200 58098000 35692000 50093000 40892000 34154000 34195000 35805000 40918000 11 11 2 11 11 11 11 11 11 11 11 16569000 25230000 24192 25169000 18566000 30407000 19869000 15485000 15356000 16963000 19756000 15425000 23542000 1140000 25759000 17818000 30318000 19946000 16541000 15975000 16506000 18922000 5 5 1 5 5 5 5 5 5 5 5 18934000 31037000 18957 31959000 18596000 18637000 20866000 17171000 17579000 19875000 22975000 17628000 28964000 1367200 32339000 17875000 19775000 20945000 17613000 18219000 19299000 21996000 6 6 1 6 6 6 6 6 6 6 6 14484000000 7157400000 7326500000 21977 712 20203 114504;114505;114506;114507;114508;114509;114510;114511;114512;114513 138846;138847;138848;138849;138850;138851;138852;138853;138854;138855;138856 138853 11 YINENLIVNTDELGRDCLINAAK Unmodified 2647.3276 0.32756509 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 1.5 2 4 4 4 4 2 12 8 74.331 74.288 3;4 1.4348E-84 23814 20211116_3445_TMUAki_TMT10x_S_F6 288.95 273.05 165380000 275590000 2115400 246330000 206510000 247300000 192410000 180810000 156110000 172880000 206830000 154000000 257050000 15694000 253060000 197730000 250370000 194780000 186950000 162200000 169170000 197950000 36 36 27 35 35 36 36 36 36 36 36 82195000 135080000 1142400 123750000 80345000 154360000 98571000 91559000 81516000 87151000 102580000 76538000 126000000 7605700 127510000 77549000 153950000 98504000 96128000 84423000 85298000 98304000 19 19 13 19 19 19 19 19 19 19 19 83184000 140510000 972980 122570000 126170000 92937000 93837000 89251000 74594000 85730000 104250000 77458000 131040000 8088700 125550000 120180000 96424000 96278000 90825000 77781000 83874000 99646000 17 17 14 16 16 17 17 17 17 17 17 20631000000 11129000000 9502100000 21978 712 20204 114514;114515;114516;114517;114518;114519;114520;114521;114522;114523;114524;114525;114526;114527;114528;114529;114530;114531;114532;114533 138857;138858;138859;138860;138861;138862;138863;138864;138865;138866;138867;138868;138869;138870;138871;138872;138873;138874;138875;138876;138877;138878;138879;138880;138881;138882;138883;138884;138885;138886;138887;138888;138889;138890;138891;138892;138893 138890 37 YIPFTHGK Unmodified 961.50215 0.50215205 177 O15258 RER1 Protein RER1 yes yes 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 42.358 42.25 3 0.00053399 11074 20211116_3440_TMUAki_TMT10x_S_F2 121.96 86.732 5655600 8776200 81502 9805300 8960300 8365600 6565400 5705500 6505800 6020700 7421200 5266400 8193000 583060 9908800 8535700 8551300 6783000 5944700 6653600 5867100 7130600 4 4 3 4 4 4 4 4 4 4 4 3200600 4897200 71212 5511800 6649800 6002900 3798900 3196100 3756500 3434300 4164800 2980600 4571900 380020 5586900 6308800 6022000 4001100 3398300 3837900 3344300 4005000 2 2 2 2 2 2 2 2 2 2 2 2455000 3879000 10289 4293500 2310400 2362600 2766600 2509500 2749300 2586400 3256400 2285900 3621100 203040 4321900 2226900 2529300 2781900 2546300 2815700 2522900 3125600 2 2 1 2 2 2 2 2 2 2 2 491020000 302290000 188740000 21979 177 20205 114534;114535;114536;114537 138894;138895;138896;138897 138897 4 YIPLPQR Unmodified 885.50724 0.50723743 2315 Q8WWM7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7-3 ATXN2L Ataxin-2-like protein yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 45.847 45.886 2 0.018534 12434 20211116_3436_TMUAki_TMT10x_P_F8 84.609 84.609 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21980 2315 20206 114538;114539 138898;138899 138898 2 YIPPHLR Unmodified 894.50757 0.50757178 104 O00571;O15523;O15523-2;O15523-3 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 0 0 By MS/MS By MS/MS 5.88 2.89 2 1 1 4 5 3 32.712 32.921 2;3 0.011556 7357 20211116_3436_TMUAki_TMT10x_P_F8 94.95 36.289 1943900 2853200 2250.1 3052100 2272000 2359700 1982100 1383500 1576000 1616200 2140600 1809600 2663100 111890 3089300 2167700 2424700 2013100 1462800 1641100 1568900 2047500 5 5 2 5 5 5 5 5 5 5 5 1182500 1673500 455.36 1877500 1503400 1728100 1178500 764160 918490 924080 1247700 1100700 1562300 72824 1898700 1431400 1748000 1204400 830380 957460 895920 1193400 2 2 1 2 2 2 2 2 2 2 2 761490 1179800 1794.7 1174600 768610 631590 803570 619300 657510 692160 892860 708830 1100800 39070 1190600 736290 676640 808750 632460 683640 673000 854020 3 3 1 3 3 3 3 3 3 3 3 68726000 41892000 26834000 21981 104 20207 114540;114541;114542;114543;114544;114545;114546;114547 138900;138901;138902;138903;138904;138905;138906 138902 7 YIQELWR Unmodified 1006.5236 0.52361577 1308 P61313;P61313-2 RPL15 60S ribosomal protein L15 yes no 0 0 0 0 By MS/MS By MS/MS 6.8 0.748 2 2 1 3 2 59.787 60.085 2 0.0020135 19933 20211116_3446_TMUAki_TMT10x_S_F7 172.03 122.01 59062000 100540000 429590 114140000 70232000 73077000 74135000 40654000 35663000 46040000 70049000 54996000 93863000 5435400 114860000 67465000 76250000 73804000 43131000 39184000 44743000 66510000 6 6 5 6 6 6 6 6 6 6 6 27873000 46399000 155770 51248000 46133000 50128000 43784000 20415000 17761000 22410000 32017000 25953000 43313000 2693700 51923000 44184000 50469000 43729000 22316000 19713000 21805000 30444000 3 3 2 3 3 3 3 3 3 3 3 31189000 54138000 273810 62889000 24099000 22948000 30352000 20239000 17902000 23630000 38032000 29042000 50549000 2741700 62942000 23281000 25781000 30075000 20816000 19471000 22938000 36065000 3 3 3 3 3 3 3 3 3 3 3 4753000000 2819500000 1933500000 21982 1308 20208 114548;114549;114550;114551;114552 138907;138908;138909;138910;138911;138912 138912 6 YIQHTYR Unmodified 979.48756 0.48756462 1179 P52565;P52565-2 ARHGDIA Rho GDP-dissociation inhibitor 1 yes no 0 0 0 0 By MS/MS 4.5 0.5 1 1 2 27.736 27.724 3 0.030023 5867 20211116_3433_TMUAki_TMT10x_P_F5 58.782 47.916 343530 438990 1393.2 506440 427690 576440 388190 280520 324880 291180 373760 319870 409870 30958 512930 409180 576270 393860 300470 335010 283940 359040 2 2 2 2 2 2 2 2 2 2 2 343530 438990 1393.2 506440 427690 576440 388190 280520 324880 291180 373760 319870 409870 30958 512930 409180 576270 393860 300470 335010 283940 359040 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5967600 5967600 0 21983 1179 20209 114553;114554 138913;138914 138914 2 YIQHTYRK Unmodified 1107.5825 0.58252764 1179 P52565;P52565-2 ARHGDIA Rho GDP-dissociation inhibitor 1 yes no 0 0 0 1 By MS/MS 2 0 2 2 29.08 28.846 3;4 0.0027975 7074 20211116_3429_TMUAki_TMT10x_P_F2 96.668 61.865 548520 1008600 775.04 877360 891870 1223300 699610 570920 669570 558790 646770 510680 940650 43684 909500 849900 1210200 718770 613030 681680 546240 624620 3 3 1 3 3 3 3 3 3 3 3 548520 1008600 775.04 877360 891870 1223300 699610 570920 669570 558790 646770 510680 940650 43684 909500 849900 1210200 718770 613030 681680 546240 624620 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33726000 33726000 0 21984 1179 20210 114555;114556 138915;138916;138917 138916 3 YIQPWESEFIDSQR Unmodified 1796.837 0.836964 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 73.003 72.849 3 3.3632E-19 24213 20211116_3442_TMUAki_TMT10x_S_F4 169.17 154.82 13849000 23612000 155560 21988000 15992000 18504000 16455000 12895000 12003000 13755000 17301000 12895000 22026000 1246100 22494000 15350000 18940000 16529000 13420000 12593000 13399000 16525000 8 8 6 8 8 8 8 8 8 8 8 5834300 8786500 26741 8402400 5676900 9849800 6617400 5378700 4784000 5314400 6351200 5431900 8197300 429340 8620600 5463500 9844600 6606400 5692400 5002700 5192900 6078200 3 3 1 3 3 3 3 3 3 3 3 8014700 14826000 128820 13586000 10315000 8654300 9837300 7516300 7218600 8440900 10950000 7463500 13829000 816750 13874000 9886200 9095100 9922300 7727200 7590700 8205800 10447000 5 5 5 5 5 5 5 5 5 5 5 1819200000 789970000 1029300000 21985 1997 20211 114557;114558;114559;114560;114561 138918;138919;138920;138921;138922;138923;138924;138925;138926 138925 9 YIQQTKPLTLER Unmodified 1488.83 0.83002813 246 O43809 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 0 0 0 1 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 44.292 44.376 3 1.899E-16 11800 20211116_3436_TMUAki_TMT10x_P_F8 199.13 177.27 11517000 19568000 127220 21104000 33319000 30171000 15429000 21202000 25185000 16477000 19660000 10724000 18265000 1372200 21557000 31505000 29976000 16888000 21868000 24998000 16287000 19136000 5 5 4 5 5 5 5 5 5 5 5 8635200 14583000 75644 15687000 30682000 27805000 13102000 16053000 19129000 12450000 14713000 8040700 13612000 1088600 16107000 28981000 27315000 14395000 16807000 19040000 12308000 14330000 3 3 2 3 3 3 3 3 3 3 3 2881800 4984800 51580 5417100 2636700 2365700 2327600 5148500 6056100 4027500 4946200 2683600 4652900 283560 5450200 2523600 2660700 2492500 5060600 5958500 3979600 4805800 2 2 2 2 2 2 2 2 2 2 2 2586000000 1974400000 611610000 21986 246 20212 114562;114563;114564;114565;114566;114567 138927;138928;138929;138930;138931;138932 138929 6 YIQSTGSSDDSALALLADITSK Unmodified 2255.1169 0.11688684 1186 P52739;P52739-2 ZNF131 Zinc finger protein 131 yes no 0 0 0 0 By MS/MS 6 0 1 1 80.997 80.997 3 0.0051229 26505 20211116_3445_TMUAki_TMT10x_S_F6 48.773 27.158 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21987 1186 20213 114568 138933 138933 1 YISLIYTNYEAGKDDYVK Unmodified 2154.0521 0.052101735 571 P09211 GSTP1 Glutathione S-transferase P yes yes 0 0 0 1 By MS/MS By MS/MS 5.46 2.47 4 2 1 2 4 8 5 13 13 71.214 71.266 2;3;4 1.1864E-56 24045 20211116_3435_TMUAki_TMT10x_P_F7 255.78 226.44 340390000 578970000 1816200 549050000 391770000 583710000 444210000 330530000 308360000 360850000 401640000 316930000 540130000 28188000 562750000 376910000 586820000 443630000 349750000 322960000 351170000 384560000 27 27 10 27 27 27 27 27 27 27 27 219060000 371550000 1307600 350620000 233510000 436930000 276170000 216960000 200960000 235450000 254330000 203960000 346610000 17945000 360460000 224940000 434840000 275570000 232250000 209630000 229190000 243690000 16 16 5 16 16 16 16 16 16 16 16 121340000 207420000 508590 198430000 158260000 146790000 168040000 113570000 107400000 125400000 147310000 112970000 193510000 10242000 202300000 151970000 151980000 168060000 117500000 113330000 121980000 140870000 11 11 5 11 11 11 11 11 11 11 11 56566000000 30178000000 26388000000 21988 571 20214 114569;114570;114571;114572;114573;114574;114575;114576;114577;114578;114579;114580;114581;114582;114583;114584;114585;114586;114587;114588;114589;114590;114591;114592;114593;114594 138934;138935;138936;138937;138938;138939;138940;138941;138942;138943;138944;138945;138946;138947;138948;138949;138950;138951;138952;138953;138954;138955;138956;138957;138958;138959;138960;138961;138962;138963;138964;138965;138966 138947 33 YISPDQLADLYK Unmodified 1424.7187 0.71874635 520 P06733;P06733-2 ENO1 Alpha-enolase yes no 0 0 0 0 By MS/MS By MS/MS 6.47 1.51 5 3 4 4 9 29 93 27 103 71 48.715 48.752 2;3 1.4964E-24 24215 20211116_3436_TMUAki_TMT10x_P_F8 254.34 187.65 487570000 812930000 4317100 773160000 552260000 692450000 545400000 503120000 487980000 505830000 579890000 453970000 758400000 40569000 790350000 529310000 706150000 551810000 521170000 502210000 493900000 556550000 161 161 65 161 161 161 161 161 161 161 161 242310000 389530000 3160800 372450000 257610000 446370000 279740000 244650000 243500000 248760000 284500000 225620000 363410000 21306000 382280000 247630000 445640000 281470000 259050000 250760000 242780000 273180000 108 108 47 108 108 108 108 108 108 108 108 245260000 423390000 1156300 400710000 294650000 246080000 265660000 258470000 244480000 257070000 295390000 228350000 394990000 19263000 408080000 281690000 260500000 270330000 262130000 251450000 251130000 283380000 53 53 18 53 53 53 53 53 53 53 53 268630000000 136680000000 131960000000 21989 520 20215 114595;114596;114597;114598;114599;114600;114601;114602;114603;114604;114605;114606;114607;114608;114609;114610;114611;114612;114613;114614;114615;114616;114617;114618;114619;114620;114621;114622;114623;114624;114625;114626;114627;114628;114629;114630;114631;114632;114633;114634;114635;114636;114637;114638;114639;114640;114641;114642;114643;114644;114645;114646;114647;114648;114649;114650;114651;114652;114653;114654;114655;114656;114657;114658;114659;114660;114661;114662;114663;114664;114665;114666;114667;114668;114669;114670;114671;114672;114673;114674;114675;114676;114677;114678;114679;114680;114681;114682;114683;114684;114685;114686;114687;114688;114689;114690;114691;114692;114693;114694;114695;114696;114697;114698;114699;114700;114701;114702;114703;114704;114705;114706;114707;114708;114709;114710;114711;114712;114713;114714;114715;114716;114717;114718;114719;114720;114721;114722;114723;114724;114725;114726;114727;114728;114729;114730;114731;114732;114733;114734;114735;114736;114737;114738;114739;114740;114741;114742;114743;114744;114745;114746;114747;114748;114749;114750;114751;114752;114753;114754;114755;114756;114757;114758;114759;114760;114761;114762;114763;114764;114765;114766;114767;114768 138967;138968;138969;138970;138971;138972;138973;138974;138975;138976;138977;138978;138979;138980;138981;138982;138983;138984;138985;138986;138987;138988;138989;138990;138991;138992;138993;138994;138995;138996;138997;138998;138999;139000;139001;139002;139003;139004;139005;139006;139007;139008;139009;139010;139011;139012;139013;139014;139015;139016;139017;139018;139019;139020;139021;139022;139023;139024;139025;139026;139027;139028;139029;139030;139031;139032;139033;139034;139035;139036;139037;139038;139039;139040;139041;139042;139043;139044;139045;139046;139047;139048;139049;139050;139051;139052;139053;139054;139055;139056;139057;139058;139059;139060;139061;139062;139063;139064;139065;139066;139067;139068;139069;139070;139071;139072;139073;139074;139075;139076;139077;139078;139079;139080;139081;139082;139083;139084;139085;139086;139087;139088;139089;139090;139091;139092;139093;139094;139095;139096;139097;139098;139099;139100;139101;139102;139103;139104;139105;139106;139107;139108;139109;139110;139111;139112;139113;139114;139115;139116;139117;139118;139119;139120;139121;139122;139123;139124;139125;139126;139127;139128;139129;139130;139131;139132;139133;139134;139135;139136;139137;139138;139139;139140;139141;139142;139143;139144;139145;139146;139147;139148;139149;139150;139151;139152;139153;139154;139155 139071 189 YISSQIERPIR Unmodified 1360.7463 0.7462985 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 1 By MS/MS By MS/MS 7.5 0.601 1 7 10 14 4 30.48 30.759 3 1.0402E-16 8345 20211116_3436_TMUAki_TMT10x_P_F8 216.03 180.32 5668000 8957700 83357 10089000 10390000 9459800 6693300 6170700 6654900 10801000 8024300 5278000 8362700 597430 10203000 9873100 9601900 6981400 6578500 6820500 10358000 7698300 15 15 12 15 15 15 15 15 15 15 15 3636100 5564200 55656 6192600 8399800 7662600 4469100 3834000 4246500 8058900 4939300 3385900 5194400 410550 6295100 7958000 7629400 4731800 4217800 4354400 7696700 4743300 10 10 8 10 10 10 10 10 10 10 10 2031900 3393500 27701 3895900 1989800 1797200 2224200 2336700 2408400 2741900 3085000 1892000 3168400 186880 3907600 1915100 1972400 2249500 2360700 2466100 2661200 2955000 5 5 4 5 5 5 5 5 5 5 5 361970000 259120000 102850000 21990 352 20216 114769;114770;114771;114772;114773;114774;114775;114776;114777;114778;114779;114780;114781;114782;114783;114784;114785;114786 139156;139157;139158;139159;139160;139161;139162;139163;139164;139165;139166;139167;139168;139169;139170;139171;139172;139173;139174;139175;139176;139177;139178 139169 23 YITDWQNVFR Unmodified 1340.6513 0.65133548 322 O75340;O75340-2 PDCD6 Programmed cell death protein 6 yes no 0 0 0 0 By MS/MS 2 0 1 1 76.044 75.99 2 0.0099848 24865 20211116_3440_TMUAki_TMT10x_S_F2 67.414 56.192 3798900 6364900 39487 6248700 4174200 4092400 4887400 3088300 3203200 3920400 4735600 3537400 5938700 357010 6350600 4022800 4279500 4868000 3215500 3386800 3794600 4520800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3798900 6364900 39487 6248700 4174200 4092400 4887400 3088300 3203200 3920400 4735600 3537400 5938700 357010 6350600 4022800 4279500 4868000 3215500 3386800 3794600 4520800 1 1 1 1 1 1 1 1 1 1 1 254350000 0 254350000 21991 322 20217 114787 139179 139179 1 YITGDQLGALYQDFVR Unmodified 1857.9261 0.92611336 568 P09104;P09104-2 ENO2 Gamma-enolase yes no 0 0 0 0 By MS/MS By MS/MS 6.93 1.06 2 3 4 6 10 5 75.548 75.563 2;3 1.3595E-107 26210 20211116_3436_TMUAki_TMT10x_P_F8 362.88 346.63 91492000 151960000 249190 148130000 104480000 139910000 123450000 79406000 74080000 93281000 111010000 85184000 141780000 6750800 151270000 100610000 141680000 122700000 84203000 78834000 90531000 105950000 13 13 7 13 13 13 13 13 13 13 13 50292000 81483000 197330 79556000 53137000 92274000 61960000 44779000 42641000 52600000 59491000 46827000 76025000 4246700 81486000 51175000 92151000 61789000 48159000 44823000 51050000 56868000 8 8 6 8 8 8 8 8 8 8 8 41200000 70477000 51858 68577000 51338000 47636000 61488000 34626000 31439000 40681000 51522000 38356000 65755000 2504100 69780000 49438000 49528000 60909000 36044000 34011000 39482000 49080000 5 5 1 5 5 5 5 5 5 5 5 25353000000 12546000000 12808000000 21992 568 20218 114788;114789;114790;114791;114792;114793;114794;114795;114796;114797;114798;114799;114800;114801;114802 139180;139181;139182;139183;139184;139185;139186;139187;139188;139189;139190;139191;139192;139193;139194 139188 15 YIVPMLTVDGK Unmodified 1234.6631 0.66314572 669 P14550 AKR1A1 Alcohol dehydrogenase [NADP(+)] yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 72.861 72.893 2 4.44E-14 22975 20211116_3447_TMUAki_TMT10x_S_F8 152.28 120.34 4768200 7401100 0 7956500 5591500 6826900 5799200 2563100 1882200 3059700 5262400 4439300 6908100 356030 8060800 5363300 6928600 5750300 2836000 2206200 2967800 4971900 1 1 0 1 1 1 1 1 1 1 1 4768200 7401100 0 7956500 5591500 6826900 5799200 2563100 1882200 3059700 5262400 4439300 6908100 356030 8060800 5363300 6928600 5750300 2836000 2206200 2967800 4971900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 228630000 228630000 0 21993 669 20219 114803;114804 139195;139196 139196 2 YIVPMLTVDGK Oxidation (M) 1250.6581 0.65806035 669 P14550 AKR1A1 Alcohol dehydrogenase [NADP(+)] yes yes 0 0 1 0 By MS/MS 7 0 1 1 63.829 64.278 2 0.053448 21637 20211116_3446_TMUAki_TMT10x_S_F7 57.59 32.667 9620100 16977000 142600 16517000 11430000 10764000 9337500 15059000 16424000 14023000 14361000 8958400 15840000 955820 16797000 10915000 11417000 9800200 15063000 16325000 13739000 13917000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9620100 16977000 142600 16517000 11430000 10764000 9337500 15059000 16424000 14023000 14361000 8958400 15840000 955820 16797000 10915000 11417000 9800200 15063000 16325000 13739000 13917000 2 2 2 2 2 2 2 2 2 2 2 1624200000 0 1624200000 21994 669 20219 114805 139197;139198 139197 732 2 YIVQVSPLGIR Unmodified 1243.7289 0.72885752 1558 Q10570 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 0 0 0 0 By MS/MS 3 0 1 1 64.844 64.386 2 1.0978E-11 23022 20211116_3441_TMUAki_TMT10x_S_F3 140.75 108.82 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21995 1558 20220 114806 139199 139199 1 YIYDQCPAVAGYGPIEQLPDYNR Unmodified 2701.2483 0.24825214 891 P31930 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 6.17 0.687 1 3 2 4 2 74.854 74.871 2;3 9.7416E-69 23675 20211116_3434_TMUAki_TMT10x_P_F6 238.83 226.21 9173300 15987000 280290 16184000 10108000 14203000 11467000 9739900 9285000 10259000 12147000 8543100 14918000 1012000 16467000 9741400 14491000 11493000 10144000 9642900 9997700 11630000 8 8 7 8 8 8 8 8 8 8 8 4450300 7508300 154510 7934400 4213400 8540500 4965700 4806000 4359600 4832800 5630000 4144700 7007600 486830 8073400 4066800 8579200 4978800 5075700 4506800 4718800 5391700 4 4 3 4 4 4 4 4 4 4 4 4722900 8478200 125790 8249600 5894300 5662600 6501800 4933800 4925300 5425800 6517400 4398400 7910200 525200 8393400 5674600 5911800 6514500 5067900 5136200 5278800 6237800 4 4 4 4 4 4 4 4 4 4 4 3122400000 1514200000 1608100000 21996 891 20221 114807;114808;114809;114810;114811;114812 139200;139201;139202;139203;139204;139205;139206;139207;139208;139209 139204 10 YKAEDEK Unmodified 881.41306 0.41306227 615 P11142 HSPA8 Heat shock cognate 71 kDa protein yes yes 0 0 0 1 By MS/MS By MS/MS 3.5 1.12 1 1 1 1 3 1 30.234 30.083 3 0.010949 9092 20211116_3441_TMUAki_TMT10x_S_F3 87.308 25.308 2264000 3170100 9003.7 2504100 1733000 3254700 1802500 1133100 1127900 936690 1899500 2108000 2955600 188650 2612900 1664000 3221700 1803900 1253200 1204400 922910 1808500 3 3 3 3 3 3 3 3 3 3 3 1302900 1747700 720.77 1344500 905070 1853200 732900 568040 559920 481580 1007000 1213200 1629300 103120 1407700 863540 1827600 747060 639810 593060 473900 957560 1 1 1 1 1 1 1 1 1 1 1 961020 1422400 8282.9 1159600 827970 1401500 1069600 565050 568010 455110 892550 894870 1326300 85531 1205200 800470 1394000 1056800 613430 611320 449010 850960 2 2 2 2 2 2 2 2 2 2 2 75402000 46271000 29131000 21997 615 20222 114813;114814;114815;114816 139210;139211;139212;139213 139213 4 YKAEDEVQR Unmodified 1136.5462 0.54620171 596 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B no no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 29.65 29.538 3 0.00084415 6199 20211116_3431_TMUAki_TMT10x_P_F4 96.113 69.702 638600 1032300 0 854510 734190 864490 819610 451310 509310 450220 705260 594570 962570 49987 884450 705840 870780 817290 479680 538670 439750 674280 2 2 0 2 2 2 2 2 2 2 2 355860 566220 0 475860 405580 557580 369500 260210 304390 249170 404560 331330 528010 28606 493060 387880 556300 374670 279240 316070 243810 387160 1 1 0 1 1 1 1 1 1 1 1 282740 466070 0 378640 328610 306910 450110 191100 204920 201050 300700 263240 434560 21380 391380 317970 314480 442620 200440 222600 195940 287110 1 1 0 1 1 1 1 1 1 1 1 27896000 12082000 15814000 21998 596 20223 114817;114818 139214;139215 139214 2 YKAEDEVQRER Unmodified 1421.6899 0.68990583 596 P0DMV8;P0DMV9;P0DMV8-2 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B yes no 0 0 0 2 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 28.133 28.075 3;4 5.6239E-08 8350 20211116_3441_TMUAki_TMT10x_S_F3 146.67 122.4 585200 883560 6896 753940 812910 874790 596620 476620 608890 483880 684020 544930 823970 57815 780110 774410 874780 616870 504910 621570 472290 657520 4 4 3 4 4 4 4 4 4 4 4 465460 689080 3194.4 591800 597320 722580 422300 367430 463830 390500 527960 433410 642620 43096 612560 568510 720070 438800 392190 472330 380430 507320 3 3 2 3 3 3 3 3 3 3 3 119730 194480 3701.5 162150 215590 152200 174320 109190 145060 93388 156060 111510 181350 14719 167550 205900 154700 178070 112710 149240 91859 150210 1 1 1 1 1 1 1 1 1 1 1 50715000 33648000 17067000 21999 596 20224 114819;114820;114821 139216;139217;139218;139219 139219 4 YKDAIHFYNK Unmodified 1297.6455 0.64552182 897 P31948;P31948-2;P31948-3 STIP1 Stress-induced-phosphoprotein 1 yes no 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 44.024 44.008 4 0.0049347 11537 20211116_3428_TMUAki_TMT10x_P_F1 71.555 48.638 12360000 19837000 0 18539000 21895000 22277000 14619000 14735000 16818000 12549000 15365000 11507000 18505000 946390 19060000 20797000 22294000 15277000 15297000 16962000 12346000 14867000 4 4 0 4 4 4 4 4 4 4 4 9166200 14912000 0 13617000 18649000 19608000 11226000 10925000 12360000 9343900 11415000 8533600 13910000 766800 14072000 17687000 19411000 11810000 11499000 12491000 9190900 11041000 2 2 0 2 2 2 2 2 2 2 2 3193800 4924900 0 4921900 3245700 2668900 3392700 3810100 4457800 3205300 3949400 2973100 4595500 179580 4987700 3110300 2883500 3466700 3798100 4470400 3155400 3825600 2 2 0 2 2 2 2 2 2 2 2 648840000 529590000 119250000 22000 897 20225 114822;114823;114824;114825 139220;139221;139222;139223 139220 4 YKDDPVDLRLDIER Unmodified 1745.8948 0.89481323 3252 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 0 2 By matching By MS/MS 3 0 2 1 1 52.029 51.782 4 0.00029343 17878 20211116_3441_TMUAki_TMT10x_S_F3 83.106 66.027 3354900 4995800 106310 5492200 3793200 2686200 2878000 4105700 3789400 3522900 4246400 3124500 4663500 383360 5526000 3620500 2941500 2995400 4085300 3831400 3464700 4082200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3354900 4995800 106310 5492200 3793200 2686200 2878000 4105700 3789400 3522900 4246400 3124500 4663500 383360 5526000 3620500 2941500 2995400 4085300 3831400 3464700 4082200 1 1 1 1 1 1 1 1 1 1 1 422150000 206430000 215730000 22001 3252 20226 114826;114827 139224 139224 1 YKDNPFSLGESFGSR Unmodified 1702.7951 0.79509919 2203 Q8N6H7;Q8N6H7-2;Q8N6H7-3 ARFGAP2 ADP-ribosylation factor GTPase-activating protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 58.46 58.542 3 1.0637E-19 17553 20211116_3436_TMUAki_TMT10x_P_F8 174.4 160.14 21696000 35857000 251120 33778000 26855000 35645000 25135000 27235000 25858000 27154000 29865000 20202000 33451000 1907300 34634000 25709000 36008000 25608000 28113000 26416000 26523000 28686000 4 4 2 4 4 4 4 4 4 4 4 9594900 15803000 251120 14894000 12276000 22128000 12511000 12663000 12022000 12530000 13540000 8935700 14742000 1067100 15367000 11792000 21884000 12663000 13349000 12305000 12243000 13014000 2 2 2 2 2 2 2 2 2 2 2 12102000 20054000 0 18884000 14579000 13517000 12624000 14572000 13836000 14624000 16326000 11266000 18708000 840210 19267000 13917000 14125000 12945000 14764000 14111000 14280000 15672000 2 2 0 2 2 2 2 2 2 2 2 1348000000 695650000 652380000 22002 2203 20227 114828;114829 139225;139226;139227;139228 139225 4 YKDSAQRDDMIFEDCGDVPSEPK Oxidation (M) 2717.1585 0.15851043 498 P05026;P05026-2 ATP1B1 Sodium/potassium-transporting ATPase subunit beta-1 yes no 0 0 1 2 By MS/MS By MS/MS 3 0 2 1 1 47.455 47.268 4 4.8331E-11 14921 20211116_3430_TMUAki_TMT10x_P_F3 108.5 87.489 1168000 2218600 2902.6 2026700 1810500 2664000 1456300 2330600 2762300 2597300 2062900 1087500 2069500 92588 2090600 1726200 2667100 1536100 2394400 2728200 2525600 2011600 2 2 1 2 2 2 2 2 2 2 2 742920 1349200 0 1275100 1558300 2234700 1177900 1320900 1624200 1534600 1265200 691610 1258700 57059 1320400 1483600 2196800 1228500 1395500 1620100 1490000 1231600 1 1 0 1 1 1 1 1 1 1 1 425130 869360 2902.6 751550 252220 429320 278330 1009700 1138000 1062600 797640 395860 810760 35529 770210 242670 470290 307570 998920 1108000 1035600 779990 1 1 1 1 1 1 1 1 1 1 1 298340000 192210000 106130000 22003 498 20228 114830;114831 139229;139230 139229 403 2 YKEALLGR Unmodified 948.53927 0.53926584 1179 P52565;P52565-2 ARHGDIA Rho GDP-dissociation inhibitor 1 yes no 0 0 0 1 By MS/MS By MS/MS 5.67 3.3 1 2 1 2 39.907 40.018 3 0.0062004 9454 20211116_3447_TMUAki_TMT10x_S_F8 80.755 59.058 4137100 7991200 111460 4995600 9809100 10327000 6806900 10656000 11059000 9203000 8931500 3852800 7445400 526310 5387700 9336700 10199000 7193100 10775000 10989000 9048000 8681700 6 6 6 6 6 6 6 6 6 6 6 1538800 2941400 52198 1813900 5424800 5713000 3227900 3870400 4002700 3372000 3202700 1433200 2740400 230650 1988400 5149500 5538100 3413100 4013200 4009800 3313800 3114300 2 2 2 2 2 2 2 2 2 2 2 2598300 5049700 59264 3181800 4384300 4614400 3578900 6786100 7056600 5831000 5728700 2419700 4705000 295660 3399300 4187200 4661300 3780000 6761400 6979600 5734200 5567400 4 4 4 4 4 4 4 4 4 4 4 208420000 138580000 69832000 22004 1179 20229 114832;114833;114834 139231;139232;139233;139234;139235;139236 139235 6 YKEETIEK Unmodified 1038.5233 0.523341 1306 P61254 RPL26 60S ribosomal protein L26 yes yes 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 34.894 34.948 3 0.010658 8436 20211116_3431_TMUAki_TMT10x_P_F4 72.2 38.938 5091500 7981600 48176 7685200 6947800 7121200 5529200 3975300 4511200 3843900 6106800 4741000 7446600 480620 7852600 6628300 7218700 5651200 4196600 4690600 3759600 5841600 4 4 3 4 4 4 4 4 4 4 4 3414100 5282700 1365.9 5199100 5503000 5816100 3936900 2770300 3191900 2630400 4086000 3178700 4929000 301180 5319100 5236500 5818600 4052200 2966100 3311600 2574800 3913900 2 2 1 2 2 2 2 2 2 2 2 1677500 2698900 46810 2486000 1444800 1305100 1592300 1205000 1319300 1213500 2020800 1562300 2517600 179440 2533500 1391800 1400200 1599000 1230500 1379000 1184800 1927600 2 2 2 2 2 2 2 2 2 2 2 143010000 110440000 32569000 22005 1306 20230 114835;114836;114837 139237;139238;139239;139240 139237 4 YKEEYAVLISEAQAIK Unmodified 1853.9775 0.97748023 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 1 By MS/MS By MS/MS 6.42 0.862 2 4 5 1 7 5 76.015 76.046 3;4 1.6541E-13 24559 20211116_3445_TMUAki_TMT10x_S_F6 141 121.93 40332000 67097000 320150 64315000 39998000 70194000 44310000 43451000 34971000 43036000 48294000 37555000 62599000 3587900 65897000 38476000 70546000 44431000 45515000 36458000 42048000 46175000 13 13 9 13 13 13 13 13 13 13 13 24682000 39209000 196290 38563000 22548000 50032000 27113000 25624000 20254000 25167000 28361000 22982000 36583000 2152300 39558000 21744000 49714000 27051000 27271000 21193000 24598000 27108000 8 8 5 8 8 8 8 8 8 8 8 15650000 27889000 123860 25752000 17449000 20162000 17197000 17827000 14716000 17869000 19933000 14573000 26015000 1435600 26339000 16732000 20832000 17380000 18244000 15265000 17450000 19067000 5 5 4 5 5 5 5 5 5 5 5 5535200000 2814000000 2721200000 22006 1695 20231 114838;114839;114840;114841;114842;114843;114844;114845;114846;114847;114848;114849 139241;139242;139243;139244;139245;139246;139247;139248;139249;139250;139251;139252;139253;139254 139250 14 YKETDLLILFK Unmodified 1381.7857 0.7857037 509 P05455 SSB Lupus La protein yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 76.999 76.965 3 6.8833E-05 25177 20211116_3436_TMUAki_TMT10x_P_F8 99.531 73.412 25621000 40139000 768310 39392000 24616000 36851000 30124000 20690000 20017000 24786000 28731000 23861000 37451000 2826100 40201000 23788000 37335000 29955000 21975000 21115000 24038000 27446000 2 2 2 2 2 2 2 2 2 2 2 13908000 21248000 385850 20500000 12901000 25066000 16043000 11580000 11523000 13679000 15041000 12952000 19824000 1498500 21034000 12473000 24951000 15968000 12517000 12045000 13273000 14401000 1 1 1 1 1 1 1 1 1 1 1 11713000 18891000 382470 18892000 11715000 11785000 14081000 9110300 8493600 11107000 13690000 10909000 17627000 1327600 19166000 11315000 12384000 13987000 9457500 9069700 10766000 13046000 1 1 1 1 1 1 1 1 1 1 1 1509000000 974160000 534800000 22007 509 20232 114850;114851 139255;139256 139255 2 YKEVAELTR Unmodified 1107.5924 0.59242362 1475 Q01082;Q01082-3;Q01082-2 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 1 By MS/MS 6 0 1 1 38.813 38.819 3 0.07707 8982 20211116_3434_TMUAki_TMT10x_P_F6 40.377 25.234 743850 1085700 0 1055800 1415200 1376200 948000 727950 872780 736540 920280 692540 1013000 63324 1084000 1344700 1367600 983700 773110 892880 718990 886290 1 1 0 1 1 1 1 1 1 1 1 743850 1085700 0 1055800 1415200 1376200 948000 727950 872780 736540 920280 692540 1013000 63324 1084000 1344700 1367600 983700 773110 892880 718990 886290 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 53384000 53384000 0 22008 1475 20233 114852 139257 139257 1 YKFEVYEK Unmodified 1104.5492 0.54916182 464 P00374;P00374-2 DHFR Dihydrofolate reductase yes no 0 0 0 1 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 47.674 48.006 3 0.0043366 13024 20211116_3445_TMUAki_TMT10x_S_F6 87.298 46.246 28959000 43757000 297370 50349000 39081000 36939000 28466000 23393000 25822000 22760000 32106000 26965000 40854000 2759300 50698000 37219000 38154000 29348000 24449000 26608000 22255000 30777000 5 5 4 5 5 5 5 5 5 5 5 17712000 26427000 119030 29297000 28773000 28473000 16821000 14897000 16163000 14317000 19209000 16492000 24670000 1673800 29673000 27291000 28752000 17667000 15814000 16580000 14006000 18436000 3 3 2 3 3 3 3 3 3 3 3 11248000 17329000 178340 21052000 10308000 8466400 11645000 8496100 9659700 8443500 12897000 10474000 16184000 1085500 21025000 9928200 9402000 11681000 8635200 10029000 8248500 12341000 2 2 2 2 2 2 2 2 2 2 2 1084100000 517870000 566220000 22009 464 20234 114853;114854;114855;114856 139258;139259;139260;139261;139262 139261 5 YKFEVYEKND Unmodified 1333.619 0.6190323 464 P00374;P00374-2 DHFR Dihydrofolate reductase yes no 0 0 0 2 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 48.393 48.52 3 0.083934 15302 20211116_3446_TMUAki_TMT10x_S_F7 52.495 35.276 4164300 7430100 28827 6481200 8182900 9542100 5654100 8052400 6783500 6427300 6786100 3877500 6929500 428400 6724700 7784300 9498600 5902400 8213700 6851700 6344200 6546200 2 2 2 2 2 2 2 2 2 2 2 2556500 4313900 711.16 3947600 5326000 7081000 3852800 4710200 3933200 3674700 3892900 2380400 4023900 251410 4100000 5069800 6967100 3987600 4877700 3996400 3631500 3756600 1 1 1 1 1 1 1 1 1 1 1 1607700 3116200 28116 2533600 2856900 2461100 1801300 3342200 2850200 2752600 2893100 1497100 2905600 176990 2624700 2714500 2531500 1914800 3336000 2855300 2712700 2789600 1 1 1 1 1 1 1 1 1 1 1 236230000 113960000 122270000 22010 464 20235 114857;114858;114859 139263;139264 139264 2 YKGQHVPGSPFQFTVGPLGEGGAHK Unmodified 2594.303 0.30300532 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 1 By MS/MS 2.5 0.5 1 1 2 53.05 52.772 5 1.3471E-05 18302 20211116_3441_TMUAki_TMT10x_S_F3 77.19 57.468 1566800 2701500 0 2593800 1899800 1584500 1554600 2601200 2352900 2017600 2490700 1458700 2520400 120050 2638600 1812000 1699300 1619700 2575900 2363600 1994500 2398400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1566800 2701500 0 2593800 1899800 1584500 1554600 2601200 2352900 2017600 2490700 1458700 2520400 120050 2638600 1812000 1699300 1619700 2575900 2363600 1994500 2398400 1 1 0 1 1 1 1 1 1 1 1 1570300000 0 1570300000 22011 755 20236 114860;114861 139265 139265 1 YKGQSGIIYCFSQK Unmodified 1677.8185 0.81847717 1041 P46063 RECQL ATP-dependent DNA helicase Q1 yes yes 0 0 0 1 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 53.642 53.404 3 9.3506E-14 17446 20211116_3430_TMUAki_TMT10x_P_F3 143.38 115.52 10009000 16772000 93368 16857000 14423000 16637000 10166000 18315000 15790000 15463000 16007000 9319800 15651000 974320 17187000 13728000 17000000 10709000 18452000 15825000 15220000 15435000 4 4 3 4 4 4 4 4 4 4 4 3329400 4934200 11808 5010900 8328600 10652000 5381900 6000700 4679700 4754400 4887600 3100100 4604400 357050 5190900 7912500 10399000 5591500 6298500 4798900 4694700 4708500 1 1 1 1 1 1 1 1 1 1 1 6679400 11838000 81560 11846000 6094700 5985600 4784400 12315000 11110000 10709000 11120000 6219700 11046000 617260 11997000 5815600 6601400 5117400 12153000 11026000 10525000 10726000 3 3 2 3 3 3 3 3 3 3 3 469400000 224690000 244710000 22012 1041 20237 114862;114863;114864 139266;139267;139268;139269 139266 4 YKLPVHTEISWK Unmodified 1499.8136 0.81364979 2287 Q8TEQ6 GEMIN5 Gem-associated protein 5 yes yes 0 0 0 1 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 52.252 52.032 4 0.0029688 15091 20211116_3440_TMUAki_TMT10x_S_F2 70.412 54.471 9577100 16170000 428710 18650000 11530000 11709000 10099000 11258000 10337000 10468000 13241000 8920400 15097000 1220900 18747000 11046000 12347000 10326000 11446000 10608000 10256000 12683000 4 4 4 4 4 4 4 4 4 4 4 2761000 4404900 31813 5505200 5069000 5423200 3467400 2926300 2763900 2776100 3477400 2571000 4114400 290880 5537200 4822000 5473700 3579100 3096800 2867900 2717500 3332500 2 2 2 2 2 2 2 2 2 2 2 6816100 11765000 396890 13145000 6461300 6286100 6631300 8331800 7572900 7692000 9763400 6349500 10983000 930030 13210000 6223700 6872900 6746700 8348900 7740600 7538800 9350500 2 2 2 2 2 2 2 2 2 2 2 644690000 170820000 473880000 22013 2287 20238 114865;114866;114867 139270;139271;139272 139272 3 YKPAVNQIECHPYLTQEK Unmodified 2217.0888 0.088838367 680 P15121 AKR1B1 Aldose reductase yes yes 0 0 0 1 By MS/MS By MS/MS 5.89 2.47 1 1 2 2 3 3 6 45.693 45.809 4;5 1.6229E-31 11690 20211116_3434_TMUAki_TMT10x_P_F6 194.37 177.69 55799000 102780000 1204200 127370000 98813000 100490000 59079000 100680000 93770000 88127000 85960000 51960000 95994000 5950800 127800000 93794000 104040000 63077000 101980000 93600000 86586000 83164000 15 15 12 15 15 15 15 15 15 15 15 23613000 44151000 220560 51677000 78359000 78381000 44594000 43102000 41831000 37113000 34520000 21985000 41225000 2639100 52587000 74279000 77410000 46914000 45425000 42417000 36493000 33527000 5 5 4 5 5 5 5 5 5 5 5 32186000 58627000 983680 75696000 20454000 22112000 14484000 57581000 51940000 51014000 51440000 29975000 54769000 3311700 75215000 19515000 26628000 16164000 56557000 51183000 50094000 49638000 10 10 8 10 10 10 10 10 10 10 10 22481000000 13812000000 8669000000 22014 680 20239 114868;114869;114870;114871;114872;114873;114874;114875;114876 139273;139274;139275;139276;139277;139278;139279;139280;139281;139282;139283;139284;139285;139286;139287 139273 15 YKPESEELTAER Unmodified 1450.694 0.69398816 533 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 1 By MS/MS By MS/MS 4.25 0.829 1 1 2 2 2 34.985 34.966 3 4.2206E-09 10989 20211116_3441_TMUAki_TMT10x_S_F3 150.29 118.13 6698500 10304000 217080 13482000 23917000 13569000 9117700 8460700 10028000 6420300 10843000 6238000 9626900 924700 13531000 22569000 13703000 10050000 8799000 10191000 6354400 10435000 6 6 4 6 6 6 6 6 6 6 6 5206100 7864200 197480 10239000 22292000 12269000 7350800 6722000 7806400 5090200 8333500 4848300 7347000 790560 10309000 21007000 12249000 8251600 7065600 7940400 5038600 8022700 3 3 2 3 3 3 3 3 3 3 3 1492500 2440100 19600 3242900 1624000 1299900 1766900 1738700 2221700 1330100 2509600 1389700 2279900 134140 3222500 1561400 1454000 1798900 1733400 2250500 1315800 2412000 3 3 2 3 3 3 3 3 3 3 3 608360000 410730000 197630000 22015 533 20240 114877;114878;114879;114880 139288;139289;139290;139291 139290 4 YKPLDLRPK Unmodified 1128.6655 0.66552898 1020 P42766 RPL35 60S ribosomal protein L35 yes yes 0 0 0 2 By MS/MS 2 0 1 1 40.436 40.165 3 0.008105 11592 20211116_3429_TMUAki_TMT10x_P_F2 67.207 38.463 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22016 1020 20241 114881 139292 139292 1 YKPVCNQVECHPYFNQR Unmodified 2238.0099 0.0098765399 1191 Q04828;P52895 AKR1C1;AKR1C2 Aldo-keto reductase family 1 member C1;Aldo-keto reductase family 1 member C2 yes no 0 0 0 1 By MS/MS 1 0 1 1 38.004 37.919 4 9.9673E-11 11144 20211116_3439_TMUAki_TMT10x_S_F1 126.63 117.35 206440 319760 0 447400 271290 207020 187480 421200 484040 355060 403720 192210 298850 17100 443810 257960 230540 203730 415460 476600 349500 391940 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 206440 319760 0 447400 271290 207020 187480 421200 484040 355060 403720 192210 298850 17100 443810 257960 230540 203730 415460 476600 349500 391940 1 1 0 1 1 1 1 1 1 1 1 44290000 0 44290000 22017 1191 20242 114882 139293 139293 1 YKPVCNQVECHPYFNR Unmodified 2109.9513 0.95129903 1011 P42330;P42330-2 AKR1C3 Aldo-keto reductase family 1 member C3 yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 38.153 38.11 4 8.7152E-15 9208 20211116_3428_TMUAki_TMT10x_P_F1 141.75 122.92 314870 540640 0 664420 802740 826450 488060 1069400 1037100 853890 704810 293170 504930 11172 671490 761720 837400 528520 1068600 1019300 842830 690190 2 2 0 2 2 2 2 2 2 2 2 174180 277530 0 341280 617620 628930 336030 684700 606250 474620 359280 162170 259200 0 347960 585130 624220 363930 687060 596170 472190 354230 1 1 0 1 1 1 1 1 1 1 1 140700 263110 0 323130 185110 197530 152040 384680 430870 379270 345530 131000 245730 11172 323530 176590 213180 164580 381510 423100 370640 335960 1 1 0 1 1 1 1 1 1 1 1 110750000 61619000 49131000 22018 1011 20243 114883;114884 139294;139295 139294 2 YKPVTNQVECHPYLTQEK Unmodified 2233.0838 0.08375299 28 C9JRZ8-2;C9JRZ8;O60218 AKR1B15;AKR1B10 Aldo-keto reductase family 1 member B15;Aldo-keto reductase family 1 member B10 yes no 0 0 0 1 By MS/MS 8 0 1 1 46.201 46.122 4 9.9956E-06 12028 20211116_3447_TMUAki_TMT10x_S_F8 88.385 64.098 315650 608110 9845.7 714780 258630 285130 212930 540550 541910 496730 540180 293970 567830 34547 715230 247440 322710 228550 535390 536840 486930 521140 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 315650 608110 9845.7 714780 258630 285130 212930 540550 541910 496730 540180 293970 567830 34547 715230 247440 322710 228550 535390 536840 486930 521140 1 1 1 1 1 1 1 1 1 1 1 112950000 0 112950000 22019 28 20244 114885 139296 139296 1 YKPYEEALLQAEAPR Unmodified 1776.9046 0.90464964 1753 Q15020;Q15020-4;Q15020-2 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 0 0 0 1 By MS/MS By MS/MS 5 1.22 1 2 2 2 1 5 3 56.899 56.934 3 1.4834E-19 17402 20211116_3433_TMUAki_TMT10x_P_F5 172.24 146.65 42019000 68124000 190460 72839000 58947000 72575000 53131000 60827000 57799000 56452000 56796000 39124000 63584000 3804500 73971000 56380000 73687000 54342000 62306000 58561000 55314000 54820000 7 7 4 7 7 7 7 7 7 7 7 25137000 39642000 115920 42065000 38062000 56858000 38434000 36011000 33556000 33854000 33168000 23405000 36999000 2307800 42963000 36508000 56542000 38815000 37601000 34337000 33152000 32008000 4 4 2 4 4 4 4 4 4 4 4 16881000 28482000 74539 30774000 20885000 15717000 14697000 24815000 24243000 22599000 23628000 15719000 26585000 1496800 31008000 19872000 17145000 15527000 24705000 24223000 22162000 22812000 3 3 2 3 3 3 3 3 3 3 3 5495500000 3586100000 1909400000 22020 1753 20245 114886;114887;114888;114889;114890;114891;114892;114893 139297;139298;139299;139300;139301;139302;139303;139304;139305 139298 9 YKQDVYLLPK Unmodified 1265.702 0.70197407 253 Q96HN2;O43865;Q96HN2-2;O43865-2;Q96HN2-4;Q96HN2-3 AHCYL2;AHCYL1 Putative adenosylhomocysteinase 3;Putative adenosylhomocysteinase 2 yes no 0 0 0 1 By MS/MS 4.5 3.5 1 1 2 53.186 53.238 3 8.8262E-05 15447 20211116_3436_TMUAki_TMT10x_P_F8 87.618 46.078 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22021 253 20246 114894;114895 139306;139307 139307 2 YKRPGYGAYDAFK Unmodified 1534.7569 0.75686319 504 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 0 0 0 2 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 40.785 40.66 4 0.0019788 11819 20211116_3429_TMUAki_TMT10x_P_F2 74.987 48.455 8065300 12585000 0 13202000 13018000 9260000 9238800 12204000 9897400 7733900 11816000 7509100 11745000 670560 13366000 12383000 9742800 9589300 12126000 10108000 7737500 11339000 3 3 0 3 3 3 3 3 3 3 3 1645500 2660700 0 2735700 6924400 5803800 3313700 4362000 3490200 2326700 2630700 1531900 2483000 182310 2831500 6546900 5690900 3555500 4446800 3512500 2356200 2564300 1 1 0 1 1 1 1 1 1 1 1 6419800 9924100 0 10467000 6094000 3456200 5925100 7842000 6407200 5407300 9185000 5977100 9262200 488250 10534000 5836400 4051900 6033800 7679000 6595700 5381300 8774400 2 2 0 2 2 2 2 2 2 2 2 554390000 383700000 170690000 22022 504 20247 114896;114897;114898;114899 139308;139309;139310 139308 3 YKTPQPIGEVYFAETFDSGR Unmodified 2304.1063 0.10626257 148 O14967 CLGN Calmegin yes yes 0 0 0 1 By MS/MS By MS/MS 7 0 3 1 2 67.995 68.338 3 6.2305E-11 23338 20211116_3446_TMUAki_TMT10x_S_F7 112.36 102.3 2389000 4100700 5574.1 4467300 3061700 3575100 2623300 4208200 3805600 5475400 4011300 2224400 3827800 212680 4518200 2925000 3711300 2720400 4284600 3827100 5295300 3863200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2389000 4100700 5574.1 4467300 3061700 3575100 2623300 4208200 3805600 5475400 4011300 2224400 3827800 212680 4518200 2925000 3711300 2720400 4284600 3827100 5295300 3863200 1 1 1 1 1 1 1 1 1 1 1 418590000 0 418590000 22023 148 20248 114900;114901;114902 139311;139312;139313 139313 3 YKVCNYGLTFTQK Unmodified 1620.797 0.79701344 3228 Q9Y277;Q9Y277-2 VDAC3 Voltage-dependent anion-selective channel protein 3 yes no 0 0 0 1 By MS/MS 4 0 1 1 53.664 53.828 3 0.0031319 15925 20211116_3431_TMUAki_TMT10x_P_F4 63.16 51.546 3635600 6866600 111690 6041700 8205700 11509000 6933300 6833400 5189100 5613000 5247100 3385900 6404200 469510 6303500 7842800 11283000 7045300 7147200 5357400 5532200 5059900 1 1 1 1 1 1 1 1 1 1 1 3635600 6866600 111690 6041700 8205700 11509000 6933300 6833400 5189100 5613000 5247100 3385900 6404200 469510 6303500 7842800 11283000 7045300 7147200 5357400 5532200 5059900 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 265830000 265830000 0 22024 3228 20249 114903 139314 139314 1 YKVDFIEEK Unmodified 1169.5968 0.5968403 3021 Q9NYK5;Q9NYK5-2 MRPL39 39S ribosomal protein L39, mitochondrial yes no 0 0 0 1 By MS/MS 6 0 1 1 51.852 51.984 3 0.05961 14618 20211116_3445_TMUAki_TMT10x_S_F6 52.391 34.254 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22025 3021 20250 114904 139315 139315 1 YKVEGFPTIYFAPSGDK Unmodified 1917.9513 0.95126548 654 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 1 By MS/MS By MS/MS 3.56 2.95 3 3 1 2 5 4 69.77 69.801 3;4 5.5346E-11 22048 20211116_3428_TMUAki_TMT10x_P_F1 131.48 116.06 46960000 76241000 100710 70374000 47752000 60102000 53271000 31302000 35124000 36069000 47798000 43720000 71119000 3370000 72054000 45891000 61214000 53184000 33422000 36976000 35031000 45717000 9 9 2 9 9 9 9 9 9 9 9 24684000 38787000 89078 35423000 22111000 37897000 25454000 16592000 18513000 19176000 24693000 22980000 36180000 1595000 36412000 21258000 37975000 25429000 18022000 19357000 18622000 23629000 5 5 1 5 5 5 5 5 5 5 5 22276000 37454000 11632 34950000 25641000 22205000 27817000 14710000 16610000 16894000 23105000 20740000 34939000 1775000 35641000 24633000 23239000 27755000 15400000 17619000 16409000 22088000 4 4 1 4 4 4 4 4 4 4 4 6799300000 4152000000 2647400000 22026 654 20251 114905;114906;114907;114908;114909;114910;114911;114912;114913 139316;139317;139318;139319;139320;139321;139322;139323;139324;139325;139326;139327 139316 12 YKVEGFPTIYFAPSGDKK Unmodified 2046.0462 0.046228496 654 P13667 PDIA4 Protein disulfide-isomerase A4 yes yes 0 0 0 2 By MS/MS 3 0 1 1 63.437 62.993 4 1.285E-05 22455 20211116_3441_TMUAki_TMT10x_S_F3 88.264 74.809 3817400 6438900 85273 6015300 4647000 4588500 4670300 4521400 4557200 4802000 5401100 3555000 6006600 407580 6145200 4461500 4761000 4732600 4608800 4671100 4678300 5184100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3817400 6438900 85273 6015300 4647000 4588500 4670300 4521400 4557200 4802000 5401100 3555000 6006600 407580 6145200 4461500 4761000 4732600 4608800 4671100 4678300 5184100 1 1 1 1 1 1 1 1 1 1 1 912730000 0 912730000 22027 654 20252 114914 139328 139328 1 YKVEYPIMYSTDPENGHIFNCIQR Oxidation (M) 2989.3739 0.37386335 139 O14880 MGST3 Microsomal glutathione S-transferase 3 yes yes 0 0 1 1 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 58.362 58.778 4 1.5844E-11 18874 20211116_3435_TMUAki_TMT10x_P_F7 114.63 111.7 22779000 40187000 289280 36992000 27320000 39852000 25798000 28596000 26605000 31395000 30381000 21211000 37487000 2177400 38007000 26172000 40169000 26273000 29727000 27165000 30547000 29191000 6 6 4 6 6 6 6 6 6 6 6 10560000 19234000 207490 16368000 10835000 25041000 12189000 14259000 13467000 15724000 13784000 9833500 17936000 1038500 17030000 10434000 24732000 12333000 15085000 13656000 15297000 13287000 3 3 2 3 3 3 3 3 3 3 3 12219000 20954000 81785 20624000 16485000 14812000 13609000 14338000 13139000 15671000 16598000 11377000 19551000 1138900 20977000 15738000 15437000 13940000 14641000 13510000 15250000 15904000 3 3 2 3 3 3 3 3 3 3 3 3840200000 1719800000 2120300000 22028 139 20253 114915;114916;114917 139329;139330;139331;139332;139333;139334 139331 99 6 YKVPDGKPENEFAFNAEFK Unmodified 2229.0742 0.074234161 1777 Q15181 PPA1 Inorganic pyrophosphatase yes yes 0 0 0 2 By MS/MS By MS/MS 6.14 2.23 1 2 2 2 3 4 58.852 59.027 4 2.263E-17 17200 20211116_3447_TMUAki_TMT10x_S_F8 147.9 128.52 169420000 248290000 2371600 310390000 149760000 173670000 159960000 95403000 102990000 109040000 163970000 157760000 231910000 15364000 310220000 143960000 183590000 159960000 101360000 109440000 105930000 156290000 8 8 6 8 8 8 8 8 8 8 8 82913000 119910000 2019800 146020000 81142000 114450000 80366000 49699000 52827000 55704000 83109000 77215000 111990000 8731600 146650000 77906000 117080000 80707000 53978000 56022000 54156000 79235000 4 4 4 4 4 4 4 4 4 4 4 86508000 128370000 351870 164370000 68617000 59221000 79593000 45704000 50167000 53336000 80864000 80545000 119920000 6632400 163570000 66050000 66513000 79249000 47379000 53414000 51776000 77056000 4 4 2 4 4 4 4 4 4 4 4 26333000000 13834000000 12498000000 22029 1777 20254 114918;114919;114920;114921;114922;114923;114924 139335;139336;139337;139338;139339;139340;139341;139342 139342 8 YKWCEYGLTFTEK Unmodified 1723.7916 0.79159371 1034 P45880;P45880-2;P45880-1 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 1 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 64.431 64.595 3 1.9879E-09 22075 20211116_3439_TMUAki_TMT10x_S_F1 134.24 121.14 109990000 196390000 889620 145120000 147740000 170040000 156760000 89478000 67293000 94170000 129960000 102420000 183060000 10309000 152040000 141930000 169880000 155770000 95181000 74598000 91778000 123420000 11 11 8 11 11 11 11 11 11 11 11 71771000 126750000 567650 94562000 90525000 132560000 113520000 57347000 42242000 61226000 83474000 66829000 118150000 6594400 99311000 87402000 131010000 111740000 62219000 47556000 59637000 79248000 7 7 5 7 7 7 7 7 7 7 7 38222000 69638000 321970 50554000 57218000 37474000 43246000 32130000 25051000 32944000 46482000 35591000 64909000 3715000 52726000 54530000 38863000 44033000 32962000 27042000 32141000 44176000 4 4 3 4 4 4 4 4 4 4 4 6772100000 3423400000 3348700000 22030 1034 20255 114925;114926;114927;114928;114929;114930 139343;139344;139345;139346;139347;139348;139349;139350;139351;139352;139353 139350 11 YLAADKDGNVTCER Unmodified 1610.7359 0.73586975 1859 Q16658 FSCN1 Fascin yes yes 0 0 0 1 By MS/MS By MS/MS 4.25 0.829 1 1 2 2 2 36.329 36.387 3 9.3387E-24 8974 20211116_3431_TMUAki_TMT10x_P_F4 192.78 179.63 8307000 13791000 0 12376000 25764000 14103000 10234000 7046200 9155900 6681800 11603000 7734300 12864000 887420 12752000 24311000 14102000 11159000 7509300 9448600 6540800 11117000 3 3 0 3 3 3 3 3 3 3 3 6280300 10249000 0 9426400 23282000 12364000 7568100 5272200 6925800 5068500 8774700 5847200 9560700 715630 9718600 21926000 12255000 8478400 5712200 7139500 4958500 8407400 2 2 0 2 2 2 2 2 2 2 2 2026700 3542100 0 2950100 2482300 1738800 2665600 1774000 2230100 1613400 2828000 1887000 3302900 171790 3033200 2384600 1846900 2680800 1797100 2309000 1582300 2709600 1 1 0 1 1 1 1 1 1 1 1 1041800000 836360000 205420000 22031 1859 20256 114931;114932;114933;114934 139354;139355;139356;139357 139354 4 YLAEFATGNDR Unmodified 1255.5833 0.5833155 1342 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 0 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 52.669 52.765 2 1.474E-18 15916 20211116_3442_TMUAki_TMT10x_S_F4 222.18 95.849 20802000 35100000 0 38839000 32972000 40087000 25526000 30501000 34967000 30324000 31475000 19367000 32766000 1630100 39377000 31411000 40546000 26574000 31490000 35036000 29623000 30470000 5 5 0 5 5 5 5 5 5 5 5 11814000 19264000 0 21688000 25379000 32406000 18523000 16858000 18679000 17134000 18337000 10998000 17985000 929890 22114000 24146000 32002000 19152000 17933000 18983000 16722000 17700000 3 3 0 3 3 3 3 3 3 3 3 8988100 15835000 0 17151000 7593700 7681100 7003000 13643000 16288000 13190000 13137000 8368600 14781000 700180 17263000 7264700 8543100 7421800 13557000 16053000 12901000 12771000 2 2 0 2 2 2 2 2 2 2 2 4191100000 2746500000 1444600000 22032 1342 20257 114935;114936;114937;114938;114939 139358;139359;139360;139361;139362 139361 5 YLAEFATGNDRK Unmodified 1383.6783 0.67827852 1342 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 0 1 By MS/MS By MS/MS 5.53 1.86 1 1 2 2 4 3 2 9 6 46.71 46.869 2;3 8.874E-59 12146 20211116_3434_TMUAki_TMT10x_P_F6 321.7 272.9 189850000 303100000 1603100 385040000 441930000 419900000 234390000 334400000 302790000 253060000 306440000 176770000 283130000 19327000 387540000 418530000 423700000 250720000 341870000 305180000 250510000 295500000 14 14 8 14 14 14 14 14 14 14 14 109520000 180370000 311320 219800000 349520000 365610000 176760000 200480000 177420000 149130000 172390000 101960000 168450000 11356000 223630000 330720000 359750000 188350000 210630000 180280000 147770000 166450000 8 8 3 8 8 8 8 8 8 8 8 80339000 122730000 1291700 165240000 92416000 54297000 57624000 133910000 125380000 103930000 134060000 74812000 114680000 7970700 163910000 87812000 63947000 62367000 131240000 124890000 102740000 129050000 6 6 5 6 6 6 6 6 6 6 6 36706000000 21276000000 15430000000 22033 1342 20258 114940;114941;114942;114943;114944;114945;114946;114947;114948;114949;114950;114951;114952;114953;114954 139363;139364;139365;139366;139367;139368;139369;139370;139371;139372;139373;139374;139375;139376;139377 139367 15 YLAEFATGNDRKEAAENSLVAYK Unmodified 2559.2605 0.26053138 1342 P62258;P62258-2 YWHAE 14-3-3 protein epsilon yes no 0 0 0 2 By MS/MS By MS/MS 6.17 1.34 1 1 1 2 1 1 5 61.311 61.504 4 2.1074E-36 18242 20211116_3447_TMUAki_TMT10x_S_F8 191.99 161.78 37023000 77413000 577210 38118000 106680000 101370000 51582000 161550000 134780000 101450000 90084000 34476000 72088000 3167900 42608000 100940000 100720000 57778000 159420000 131890000 101560000 88284000 8 8 5 8 8 8 8 8 8 8 8 14458000 30127000 0 15320000 25897000 62499000 28609000 60858000 51754000 40364000 35135000 13461000 28057000 0 17380000 24899000 60723000 29594000 61345000 51048000 40266000 34408000 2 2 0 2 2 2 2 2 2 2 2 22566000 47286000 577210 22798000 80787000 38869000 22973000 100690000 83023000 61087000 54948000 21015000 44031000 3167900 25227000 76040000 39995000 28184000 98073000 80838000 61292000 53876000 6 6 5 6 6 6 6 6 6 6 6 8854200000 3653100000 5201100000 22034 1342 20259 114955;114956;114957;114958;114959;114960 139378;139379;139380;139381;139382;139383;139384;139385 139385 8 YLAEKYEWDVAEAR Unmodified 1741.8312 0.83115034 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 1 By MS/MS By MS/MS 3.77 1.89 2 2 2 2 2 2 1 7 6 60.08 60.048 3 3.1167E-19 17568 20211116_3444_TMUAki_TMT10x_S_F5 172.91 144.1 198050000 324770000 1492900 328860000 238650000 263830000 244740000 121140000 99470000 130850000 214630000 184410000 303060000 18084000 334230000 229050000 269570000 243440000 130650000 111640000 127400000 203480000 17 17 12 17 17 17 17 17 17 17 17 121360000 195890000 1243200 198070000 163810000 208670000 178060000 74572000 59271000 78377000 129710000 113010000 182790000 11694000 202070000 157490000 208910000 176190000 82701000 67996000 76391000 122950000 9 9 7 9 9 9 9 9 9 9 9 76686000 128880000 249670 130790000 74838000 55159000 66681000 46563000 40199000 52477000 84912000 71403000 120270000 6389700 132160000 71557000 60665000 67244000 47953000 43641000 51008000 80527000 8 8 5 8 8 8 8 8 8 8 8 21639000000 11598000000 10040000000 22035 653 20260 114961;114962;114963;114964;114965;114966;114967;114968;114969;114970;114971;114972;114973 139386;139387;139388;139389;139390;139391;139392;139393;139394;139395;139396;139397;139398;139399;139400;139401;139402;139403 139402 18 YLAEVAAGDDKK Unmodified 1278.6456 0.6455814 1395 P63104;P63104-2 YWHAZ 14-3-3 protein zeta/delta yes no 0 0 0 1 By MS/MS By MS/MS 4.5 1.12 2 2 2 2 4 4 46.163 46.228 3 4.5397E-09 12808 20211116_3431_TMUAki_TMT10x_P_F4 150.21 129.36 56901000 89391000 679260 94250000 90101000 82672000 68832000 52846000 58526000 53746000 72529000 52983000 83430000 5598500 95634000 85886000 84264000 70613000 55263000 60488000 52454000 69533000 9 9 7 9 9 9 9 9 9 9 9 32716000 49457000 463230 52399000 62369000 59780000 37494000 30541000 32754000 30112000 39953000 30464000 46160000 3482000 53358000 59200000 59788000 39185000 32514000 33785000 29426000 38318000 5 5 4 5 5 5 5 5 5 5 5 24185000 39934000 216030 41851000 27732000 22892000 31339000 22306000 25772000 23634000 32576000 22519000 37270000 2116500 42276000 26686000 24477000 31427000 22748000 26704000 23028000 31215000 4 4 3 4 4 4 4 4 4 4 4 5344200000 3126800000 2217400000 22036 1395 20261 114974;114975;114976;114977;114978;114979;114980;114981 139404;139405;139406;139407;139408;139409;139410;139411;139412 139405 9 YLAEVACGDDR Unmodified 1267.5503 0.55030081 825 P27348 YWHAQ 14-3-3 protein theta yes yes 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 45.031 44.908 2 3.665E-19 12159 20211116_3440_TMUAki_TMT10x_S_F2 234.2 222.33 5850500 9201600 8401.5 11022000 13575000 11883000 7080100 8785300 9173400 7474200 9733400 5446800 8592900 520870 11128000 12849000 11983000 7586100 9049400 9260600 7353700 9372100 5 5 1 5 5 5 5 5 5 5 5 3362300 5297000 0 6291100 11631000 9813300 4789100 4918200 5153400 4263600 5502600 3130100 4946400 326360 6400500 10976000 9669900 5226800 5227900 5239200 4191000 5297400 3 3 0 3 3 3 3 3 3 3 3 2488200 3904600 8401.5 4730700 1944500 2069600 2290900 3867100 4020000 3210700 4230800 2316700 3646500 194510 4728000 1873000 2312900 2359200 3821400 4021500 3162700 4074800 2 2 1 2 2 2 2 2 2 2 2 778940000 506510000 272420000 22037 825 20262 114982;114983;114984;114985;114986 139413;139414;139415;139416;139417 139416 5 YLAEVACGDDRK Unmodified 1395.6453 0.64526383 825 P27348 YWHAQ 14-3-3 protein theta yes yes 0 0 0 1 By MS/MS By MS/MS 4.29 1.03 2 2 2 1 3 4 41.001 41.033 3 1.401E-15 10860 20211116_3431_TMUAki_TMT10x_P_F4 193.49 127.86 40209000 61278000 904300 81386000 63457000 44514000 40620000 31517000 39150000 31069000 49818000 37445000 57254000 4500800 81055000 60326000 47330000 42351000 32687000 40271000 30362000 47728000 11 11 10 11 11 11 11 11 11 11 11 15802000 23639000 406070 31834000 43402000 28319000 16869000 12731000 15238000 12024000 19387000 14717000 22088000 2073900 31844000 40973000 28716000 18448000 13710000 15721000 11773000 18573000 5 5 4 5 5 5 5 5 5 5 5 24406000 37639000 498230 49552000 20055000 16195000 23751000 18786000 23912000 19044000 30432000 22728000 35165000 2426800 49211000 19353000 18614000 23903000 18978000 24550000 18589000 29154000 6 6 6 6 6 6 6 6 6 6 6 3137400000 1709400000 1428000000 22038 825 20263 114987;114988;114989;114990;114991;114992;114993 139418;139419;139420;139421;139422;139423;139424;139425;139426;139427;139428;139429 139420 12 YLAEVASGEKK Unmodified 1193.6292 0.62920306 1515 Q04917 YWHAH 14-3-3 protein eta yes yes 0 0 0 1 By MS/MS By MS/MS 6 0.707 1 2 1 2 2 44.541 44.761 3 0.00025563 11362 20211116_3434_TMUAki_TMT10x_P_F6 90.731 64.601 5506100 8864600 235100 9220600 8811300 8390800 6505300 7331800 7442900 6229400 7534600 5128500 8272900 721900 9368900 8405000 8575400 6748200 7475000 7534100 6129400 7265600 3 3 3 3 3 3 3 3 3 3 3 2137000 3214800 117570 3537800 4987500 5047400 2842900 2747300 2955200 2186600 2888900 1990600 3001000 326670 3608900 4735500 4997200 2999300 2892600 2999200 2158700 2788900 1 1 1 1 1 1 1 1 1 1 1 3369100 5649800 117530 5682700 3823800 3343400 3662400 4584500 4487600 4042800 4645800 3137800 5272000 395230 5760000 3669500 3578300 3748900 4582400 4534900 3970800 4476700 2 2 2 2 2 2 2 2 2 2 2 520690000 335630000 185050000 22039 1515 20264 114994;114995;114996;114997 139430;139431;139432 139430 3 YLAEVATGEK Unmodified 1079.5499 0.5498901 1331 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 4 0.577 1 4 1 3 3 50.819 50.971 2;3 8.9471E-09 14785 20211116_3431_TMUAki_TMT10x_P_F4 140.45 80.295 8437500 12580000 0 16031000 12919000 10558000 8547700 8028900 8905700 7799200 10765000 7855800 11751000 720800 16029000 12275000 11036000 8910000 8284000 9110300 7626500 10327000 3 3 0 3 3 3 3 3 3 3 3 4024300 5688600 0 7853700 8644300 7338200 4463300 3574600 4127600 3461600 5012300 3747000 5316100 395160 7851400 8183300 7422900 4735500 3821000 4245200 3385500 4807800 1 1 0 1 1 1 1 1 1 1 1 4413200 6891400 0 8177300 4274700 3219600 4084500 4454300 4778100 4337500 5752800 4108900 6435200 325640 8177200 4091500 3613400 4174500 4463000 4865200 4241100 5519400 2 2 0 2 2 2 2 2 2 2 2 590420000 246840000 343580000 22040 1331 20265 114998;114999;115000;115001;115002;115003 139433;139434;139435;139436;139437;139438 139435 6 YLAEVATGEKR Unmodified 1235.651 0.65100113 1331 P61981 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 0 0 0 1 By MS/MS By MS/MS 5.62 0.992 1 3 2 2 4 4 40.905 41.125 3 4.7846E-16 11148 20211116_3433_TMUAki_TMT10x_P_F5 206.97 177.53 24395000 34735000 86310 34750000 49212000 47560000 30597000 31015000 32172000 29211000 33920000 22713000 32412000 2123900 35641000 46703000 47289000 32058000 32315000 32723000 28603000 32667000 6 6 2 6 6 6 6 6 6 6 6 18383000 26233000 74065 26537000 42479000 41926000 23448000 23401000 24210000 22306000 25780000 17116000 24479000 1752100 27281000 40245000 41346000 24803000 24695000 24652000 21830000 24821000 4 4 1 4 4 4 4 4 4 4 4 6012300 8502200 12244 8212800 6733300 5633900 7148800 7613700 7961900 6904700 8139600 5596900 7932400 371820 8360300 6457800 5943000 7254700 7619900 8070600 6772700 7846500 2 2 1 2 2 2 2 2 2 2 2 2682900000 1667500000 1015500000 22041 1331 20266 115004;115005;115006;115007;115008;115009;115010;115011 139439;139440;139441;139442;139443;139444;139445;139446;139447;139448 139440 10 YLAGADPSTVEMCYPPIIQSGGNYNLK Oxidation (M) 2973.3888 0.38884472 3317 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 1 0 By MS/MS 7 0 1 1 76.645 76.727 3 1.0139E-24 26909 20211116_3446_TMUAki_TMT10x_S_F7 148.89 140.07 678040 1229300 46502 1069100 1016200 916200 852720 904400 809770 784980 1054200 631670 1146500 104290 1099700 973070 942530 872170 916550 834350 771570 1009400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 678040 1229300 46502 1069100 1016200 916200 852720 904400 809770 784980 1054200 631670 1146500 104290 1099700 973070 942530 872170 916550 834350 771570 1009400 1 1 1 1 1 1 1 1 1 1 1 921760000 0 921760000 22042 3317 20267 115012 139449 139449 3278 1 YLAIAPPIIK Unmodified 1097.6849 0.68486744 1847 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 2.38 0.696 1 3 4 4 4 74.648 74.481 2;3 8.4583E-09 25117 20211116_3430_TMUAki_TMT10x_P_F3 141.78 121.08 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22043 1847 20268 115013;115014;115015;115016;115017;115018;115019;115020 139450;139451;139452;139453;139454;139455;139456;139457 139451 8 YLANIEQQHGNSGR Unmodified 1585.7597 0.75971673 3162 Q9UKX7;Q9UKX7-2 NUP50 Nuclear pore complex protein Nup50 yes no 0 0 0 0 By MS/MS 5 0 1 1 32.797 32.961 3 7.5011E-05 6688 20211116_3444_TMUAki_TMT10x_S_F5 91.812 73.477 68518 116030 4173.4 124030 74701 62008 85399 73723 67799 67993 87191 63828 108300 9656.7 125040 72148 67258 85520 74193 70432 66642 83510 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 68518 116030 4173.4 124030 74701 62008 85399 73723 67799 67993 87191 63828 108300 9656.7 125040 72148 67258 85520 74193 70432 66642 83510 1 1 1 1 1 1 1 1 1 1 1 4447000 0 4447000 22044 3162 20269 115021 139458 139458 1 YLAPSGPSGTLK Unmodified 1189.6343 0.63428844 1859 Q16658 FSCN1 Fascin yes yes 0 0 0 0 By MS/MS By MS/MS 6.2 2.64 2 4 4 5 5 47.725 47.968 2;3 1.0195E-19 13232 20211116_3436_TMUAki_TMT10x_P_F8 232.88 193.86 38115000 59934000 407900 72722000 71739000 64733000 42517000 49297000 55502000 41670000 54043000 35491000 55973000 3896900 73166000 68070000 66091000 45057000 50672000 55844000 41011000 52179000 13 13 7 13 13 13 13 13 13 13 13 19999000 30370000 243150 36572000 55184000 50504000 25346000 27175000 30265000 23259000 28023000 18623000 28361000 2334800 37080000 52174000 50066000 27422000 28689000 30495000 22877000 27103000 7 7 4 7 7 7 7 7 7 7 7 18116000 29565000 164750 36150000 16556000 14229000 17171000 22122000 25237000 18411000 26020000 16868000 27612000 1562100 36086000 15895000 16025000 17635000 21983000 25349000 18134000 25076000 6 6 3 6 6 6 6 6 6 6 6 6422100000 4209900000 2212300000 22045 1859 20270 115022;115023;115024;115025;115026;115027;115028;115029;115030;115031 139459;139460;139461;139462;139463;139464;139465;139466;139467;139468;139469;139470;139471;139472 139465 14 YLAVESPFLK Unmodified 1165.6383 0.63831118 1135 P50416;P50416-2 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform yes no 0 0 0 0 By MS/MS 7.5 0.5 1 1 2 70.936 71.332 2 1.0679E-08 22888 20211116_3436_TMUAki_TMT10x_P_F8 135.71 99.316 6400200 11470000 133300 10350000 6749400 13199000 8422600 5971100 6074500 7137800 8032400 5960200 10698000 659740 10680000 6521800 13108000 8383200 6470700 6352000 6923100 7688000 1 1 1 1 1 1 1 1 1 1 1 6400200 11470000 133300 10350000 6749400 13199000 8422600 5971100 6074500 7137800 8032400 5960200 10698000 659740 10680000 6521800 13108000 8383200 6470700 6352000 6923100 7688000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 304350000 304350000 0 22046 1135 20271 115032;115033 139473;139474 139474 2 YLDEDTIYHLQPSGR Unmodified 1805.8584 0.85842773 885 P31153;P31153-2 MAT2A S-adenosylmethionine synthase isoform type-2 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 1.12 2 2 2 2 4 4 53.993 54.018 3 1.5284E-33 15151 20211116_3444_TMUAki_TMT10x_S_F5 220.14 195.58 43347000 72454000 335720 76919000 62146000 73313000 50889000 55481000 55234000 50380000 57488000 40360000 67624000 3872400 78101000 59307000 74508000 52342000 57156000 56081000 49414000 55387000 13 13 8 13 13 13 13 13 13 13 13 22430000 37288000 143340 37636000 39661000 54828000 31245000 29102000 29550000 27071000 29419000 20884000 34795000 2082300 38627000 37816000 54216000 32081000 30827000 30132000 26523000 28383000 6 6 3 6 6 6 6 6 6 6 6 20917000 35166000 192380 39283000 22485000 18485000 19644000 26378000 25683000 23309000 28069000 19476000 32829000 1790100 39474000 21491000 20292000 20261000 26329000 25949000 22891000 27004000 7 7 5 7 7 7 7 7 7 7 7 9245800000 5631100000 3614700000 22047 885 20272 115034;115035;115036;115037;115038;115039;115040;115041 139475;139476;139477;139478;139479;139480;139481;139482;139483;139484;139485;139486;139487 139486 13 YLDLHDCYLK Unmodified 1338.6278 0.62782285 1572 Q12874 SF3A3 Splicing factor 3A subunit 3 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 54.719 55.24 3 0.0015747 17452 20211116_3435_TMUAki_TMT10x_P_F7 72.434 38.548 9954100 15688000 90487 18192000 8931300 8168000 6934500 12616000 11981000 11715000 13504000 9268900 14648000 895270 18232000 8519000 9039300 7294600 12575000 12022000 11478000 12979000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9954100 15688000 90487 18192000 8931300 8168000 6934500 12616000 11981000 11715000 13504000 9268900 14648000 895270 18232000 8519000 9039300 7294600 12575000 12022000 11478000 12979000 2 2 2 2 2 2 2 2 2 2 2 273000000 0 273000000 22048 1572 20273 115042;115043 139488;139489;139490 139488 3 YLDPEYIDR Unmodified 1182.5557 0.55570376 369 O75935;O75935-3;O75935-2 DCTN3 Dynactin subunit 3 yes no 0 0 0 0 By MS/MS 3 0 1 1 53.499 53.126 2 0.0036898 18412 20211116_3441_TMUAki_TMT10x_S_F3 78.113 48.737 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22049 369 20274 115044 139491 139491 1 YLDPSFFQHR Unmodified 1308.6251 0.62512073 2876 Q9HD45 TM9SF3 Transmembrane 9 superfamily member 3 yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 55.747 55.786 3 1.1763E-06 16471 20211116_3436_TMUAki_TMT10x_P_F8 147.78 130.75 2728400 4971500 6799.5 5241600 4271500 4668800 3264300 4236000 3166100 3598600 4026400 2540400 4639900 252690 5319600 4070700 4781800 3360800 4309600 3255700 3540900 3857500 2 2 1 2 2 2 2 2 2 2 2 1285500 2144000 6799.5 2047800 2155100 3161800 1764000 1747900 1329800 1513300 1633800 1197000 2000200 125100 2112600 2057000 3120600 1796300 1841500 1382700 1487600 1566600 1 1 1 1 1 1 1 1 1 1 1 1442800 2827500 0 3193700 2116400 1506900 1500400 2488100 1836200 2085400 2392600 1343400 2639700 127590 3207000 2013700 1661200 1564500 2468100 1873100 2053300 2290800 1 1 0 1 1 1 1 1 1 1 1 993700000 464410000 529290000 22050 2876 20275 115045;115046;115047 139492;139493;139494 139492 3 YLDQMEDLYEDFHIVK Oxidation (M) 2072.9401 0.94010844 233 O43681 ASNA1 ATPase ASNA1 yes yes 0 0 1 0 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 72.074 71.906 3 8.8827E-11 24486 20211116_3429_TMUAki_TMT10x_P_F2 130.29 121.01 34212000 61044000 273030 51988000 41039000 63500000 42445000 44023000 45294000 46527000 45138000 31857000 56926000 2684600 53848000 39399000 63542000 43068000 45818000 45948000 45337000 43548000 11 11 6 11 11 11 11 11 11 11 11 19269000 33034000 47466 28254000 20818000 42839000 23028000 24633000 25306000 26154000 23743000 17942000 30807000 1188600 29379000 20018000 42333000 23314000 26010000 25589000 25480000 22953000 5 5 2 5 5 5 5 5 5 5 5 14943000 28009000 225560 23734000 20221000 20661000 19416000 19390000 19988000 20373000 21395000 13915000 26120000 1496000 24469000 19380000 21210000 19755000 19808000 20359000 19857000 20596000 6 6 4 6 6 6 6 6 6 6 6 3228400000 1807500000 1420900000 22051 233 20276 115048;115049;115050;115051;115052 139495;139496;139497;139498;139499;139500;139501;139502;139503;139504;139505 139499 185 11 YLEAGAAGLR Unmodified 1019.54 0.53999412 3035 Q9NZL4;Q9NZL4-3;Q9NZL4-2 HSPBP1 Hsp70-binding protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 43.545 43.719 2 9.5637E-05 11861 20211116_3431_TMUAki_TMT10x_P_F4 97.431 68.282 3839700 6942600 191610 7796400 4032900 3960500 3575100 7965800 7817600 6453100 6391700 3576600 6481300 499620 7835900 3867000 4361300 3781700 7851700 7716800 6364700 6210000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3839700 6942600 191610 7796400 4032900 3960500 3575100 7965800 7817600 6453100 6391700 3576600 6481300 499620 7835900 3867000 4361300 3781700 7851700 7716800 6364700 6210000 2 2 2 2 2 2 2 2 2 2 2 328300000 0 328300000 22052 3035 20277 115053;115054;115055 139506;139507;139508 139506 3 YLECSALTQR Unmodified 1239.5918 0.59177169 1390 P63000;P63000-2;P60763;P15153 RAC1;RAC3;RAC2 Ras-related C3 botulinum toxin substrate 1;Ras-related C3 botulinum toxin substrate 3;Ras-related C3 botulinum toxin substrate 2 yes no 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 43.745 43.848 2 3.5222E-41 11944 20211116_3431_TMUAki_TMT10x_P_F4 276.39 226.27 4908900 6635300 0 9610800 17242000 13655000 6913700 6724600 6842100 5264500 7475300 4569600 6202600 453960 9654900 16264000 13506000 7550700 7143200 6986200 5201800 7191500 2 2 0 2 2 2 2 2 2 2 2 4908900 6635300 0 9610800 17242000 13655000 6913700 6724600 6842100 5264500 7475300 4569600 6202600 453960 9654900 16264000 13506000 7550700 7143200 6986200 5201800 7191500 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 600700000 600700000 0 22053 1390 20278 115056;115057;115058 139509;139510;139511;139512 139509 4 YLEDRGEVTFEK Unmodified 1484.7147 0.7147236 798 P25098 ADRBK1 Beta-adrenergic receptor kinase 1 yes yes 0 0 0 1 By MS/MS 3.5 0.5 1 1 2 47.937 47.849 3 0.00021269 13949 20211116_3442_TMUAki_TMT10x_S_F4 88.706 72.575 4806700 7333800 48619 8503700 4558700 4244100 4406800 5036700 4767600 4698500 6091200 4475900 6847600 440350 8528900 4370200 4604200 4489100 5070800 4881400 4602700 5835000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4806700 7333800 48619 8503700 4558700 4244100 4406800 5036700 4767600 4698500 6091200 4475900 6847600 440350 8528900 4370200 4604200 4489100 5070800 4881400 4602700 5835000 2 2 2 2 2 2 2 2 2 2 2 500760000 0 500760000 22054 798 20279 115059;115060 139513;139514 139514 2 YLEEIATQMR Unmodified 1252.6122 0.61217279 1487 Q01813;Q01813-2 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 0 0 0 0 By MS/MS 5 0 1 1 62.772 62.852 2 5.8025E-07 18792 20211116_3444_TMUAki_TMT10x_S_F5 107.15 77.094 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22055 1487 20280 115061 139515 139515 1 YLELLER Unmodified 934.51238 0.51238239 312 O75153 CLUH Clustered mitochondria protein homolog yes yes 0 0 0 0 By MS/MS 4 0 1 1 61.847 61.709 2 0.075196 19665 20211116_3442_TMUAki_TMT10x_S_F4 62.573 32.069 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22056 312 20281 115062 139516 139516 1 YLENQTFR Unmodified 1069.5193 0.51925868 62 O00139;O00139-2;O00139-1;O00139-5;O00139-4 KIF2A Kinesin-like protein KIF2A yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 39.708 39.761 2 0.0024257 11834 20211116_3430_TMUAki_TMT10x_P_F3 109.71 78.425 329160 483040 3634.5 595770 953270 719030 420040 386760 440110 319360 502130 306510 451150 39418 601660 900860 717430 454570 407980 449060 314680 482470 1 1 1 1 1 1 1 1 1 1 1 329160 483040 3634.5 595770 953270 719030 420040 386760 440110 319360 502130 306510 451150 39418 601660 900860 717430 454570 407980 449060 314680 482470 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16944000 16944000 0 22057 62 20282 115063;115064 139517;139518 139517 2 YLENYDAIR Unmodified 1155.556 0.55603811 683 P15374 UCHL3 Ubiquitin carboxyl-terminal hydrolase isozyme L3 yes yes 0 0 0 0 By MS/MS By matching 3.5 0.5 1 1 1 1 48.292 48.354 2 0.059636 15366 20211116_3430_TMUAki_TMT10x_P_F3 53.756 14.608 2725600 4249600 0 4713500 6670300 7713400 3905100 4420800 4821300 3959500 4161800 2537800 3967100 275770 4820700 6325900 7598800 4134100 4647100 4841400 3886100 4035200 1 1 0 1 1 1 1 1 1 1 1 2725600 4249600 0 4713500 6670300 7713400 3905100 4420800 4821300 3959500 4161800 2537800 3967100 275770 4820700 6325900 7598800 4134100 4647100 4841400 3886100 4035200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 376720000 253470000 123250000 22058 683 20283 115065;115066 139519 139519 1 YLEPLYNDYRK Unmodified 1472.73 0.72997974 2218 Q8NAV1 PRPF38A Pre-mRNA-splicing factor 38A yes yes 0 0 0 1 By MS/MS By matching 7 0 2 1 1 52.055 52.652 3 0.055378 16387 20211116_3435_TMUAki_TMT10x_P_F7 44.922 25.956 5277100 8750400 0 9594300 9506300 11276000 6945100 6320400 6144400 6397100 6690100 4912900 8168300 428310 9753300 9046200 11272000 7153800 6678600 6305300 6244600 6436800 1 1 0 1 1 1 1 1 1 1 1 5277100 8750400 0 9594300 9506300 11276000 6945100 6320400 6144400 6397100 6690100 4912900 8168300 428310 9753300 9046200 11272000 7153800 6678600 6305300 6244600 6436800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 921150000 611880000 309270000 22059 2218 20284 115067;115068 139520 139520 1 YLEVSEPQDIECCGALEYYDK Unmodified 2580.1036 0.10362131 185 O15371;O15371-2;O15371-3 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 0 0 0 0 By MS/MS By MS/MS 2.54 1.22 3 4 3 2 1 8 5 74.982 74.882 2;3;4 7.1285E-44 25694 20211116_3429_TMUAki_TMT10x_P_F2 200.44 186.18 39872000 67738000 478090 59442000 48276000 61583000 48326000 39088000 36223000 40153000 50904000 37127000 63176000 3751900 61259000 46311000 62099000 48642000 40909000 37901000 39172000 48651000 16 16 11 16 16 16 16 16 16 16 16 20825000 35136000 181940 30131000 20583000 39467000 24799000 18996000 17557000 19157000 24908000 19391000 32767000 1822900 31232000 19849000 39170000 24710000 20352000 18439000 18703000 23800000 8 8 5 8 8 8 8 8 8 8 8 19047000 32602000 296150 29311000 27692000 22116000 23527000 20091000 18666000 20996000 25996000 17736000 30409000 1929000 30027000 26463000 22929000 23932000 20557000 19462000 20469000 24850000 8 8 6 8 8 8 8 8 8 8 8 9164200000 5002500000 4161700000 22060 185 20285 115069;115070;115071;115072;115073;115074;115075;115076;115077;115078;115079;115080;115081 139521;139522;139523;139524;139525;139526;139527;139528;139529;139530;139531;139532;139533;139534;139535;139536;139537;139538;139539 139524 19 YLFNCGEGVQR Unmodified 1341.6136 0.61356977 2622 Q9BQ52;Q9BQ52-4 ELAC2 Zinc phosphodiesterase ELAC protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 47.868 47.994 2 2.6766E-23 12995 20211116_3445_TMUAki_TMT10x_S_F6 245.38 216.47 4961200 8696100 24976 10212000 6215300 6822100 4643400 7992200 7344900 6806600 7825000 4619500 8120100 447540 10260000 5921200 7185200 4875800 8031400 7371000 6696500 7533700 3 3 2 3 3 3 3 3 3 3 3 1671600 2703200 0 3047900 3523500 4522600 2577100 2587500 2443600 2235700 2479000 1556400 2523700 159900 3107100 3354400 4472900 2659400 2717900 2493100 2198000 2390300 1 1 0 1 1 1 1 1 1 1 1 3289700 5992900 24976 7163800 2691800 2299400 2066400 5404700 4901200 4570900 5346000 3063200 5596400 287640 7152800 2566800 2712300 2216500 5313400 4877900 4498600 5143400 2 2 2 2 2 2 2 2 2 2 2 297590000 128610000 168980000 22061 2622 20286 115082;115083 139540;139541;139542 139541 3 YLFPVPK Unmodified 862.49528 0.49527576 2467 Q96G21 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes yes 0 0 0 0 By MS/MS 3 0 1 1 64.01 63.724 2 0.011682 21689 20211116_3430_TMUAki_TMT10x_P_F3 94.669 66.14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22062 2467 20287 115084 139543 139543 1 YLFTGLK Unmodified 840.47454 0.47454032 1220 P54578;P54578-2;P54578-3 USP14 Ubiquitin carboxyl-terminal hydrolase 14 yes no 0 0 0 0 By MS/MS By MS/MS 2.86 0.833 3 2 2 4 3 64.338 64.141 2 0.0041837 20147 20211116_3431_TMUAki_TMT10x_P_F4 114.72 59.956 32773000 57041000 596890 56912000 49278000 60151000 39417000 54180000 50848000 47303000 48747000 30519000 53225000 3457000 58117000 47035000 60944000 40852000 55182000 51154000 46482000 47090000 4 4 3 4 4 4 4 4 4 4 4 15524000 27841000 449780 26458000 28728000 42970000 24048000 26055000 25312000 23484000 22738000 14457000 25973000 1891100 27336000 27456000 42377000 24676000 27268000 25604000 23041000 22014000 2 2 2 2 2 2 2 2 2 2 2 17250000 29200000 147100 30454000 20549000 17181000 15370000 28125000 25536000 23819000 26009000 16062000 27251000 1565900 30781000 19579000 18567000 16176000 27915000 25551000 23440000 25075000 2 2 1 2 2 2 2 2 2 2 2 2167000000 1102000000 1064900000 22063 1220 20288 115085;115086;115087;115088;115089;115090;115091 139544;139545;139546;139547;139548;139549;139550 139547 7 YLGEGPR Unmodified 790.39735 0.39735263 1032 P43686;P43686-2 PSMC4 26S protease regulatory subunit 6B yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 33 33.026 2 0.0060775 7581 20211116_3431_TMUAki_TMT10x_P_F4 105.27 63.04 897890 1433600 0 1395400 1780400 1667000 1065700 837540 964610 784840 1183100 835960 1337500 78795 1430300 1688600 1662900 1115200 891840 993500 768680 1134500 1 1 0 1 1 1 1 1 1 1 1 897890 1433600 0 1395400 1780400 1667000 1065700 837540 964610 784840 1183100 835960 1337500 78795 1430300 1688600 1662900 1115200 891840 993500 768680 1134500 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33035000 33035000 0 22064 1032 20289 115092;115093 139551;139552 139551 2 YLGFGTPSNLGK Unmodified 1252.6452 0.64518747 378 O76031 CLPX ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial yes yes 0 0 0 0 By MS/MS 2 0 1 1 62.116 61.879 2 1.6599E-15 19168 20211116_3440_TMUAki_TMT10x_S_F2 171.33 131.06 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22065 378 20290 115094 139553 139553 1 YLGGSMDLSTFDFR Oxidation (M) 1623.7239 0.72390808 454 O95983;O95983-2 MBD3 Methyl-CpG-binding domain protein 3 yes no 0 0 1 0 By MS/MS By MS/MS 6 0 2 1 1 69.839 69.774 2 6.4707E-06 21971 20211116_3445_TMUAki_TMT10x_S_F6 111.61 92.827 9007300 16185000 28982 13735000 11725000 14202000 10846000 12102000 12734000 12419000 13000000 8385800 15093000 668710 14192000 11213000 14392000 11106000 12420000 12881000 12116000 12532000 4 4 1 4 4 4 4 4 4 4 4 2124700 3755100 0 3307900 2408900 5276100 2681000 2702100 2857900 2788300 3132200 1978100 3502200 145440 3435600 2314300 5195700 2710700 2879800 2909400 2719700 3013000 1 1 0 1 1 1 1 1 1 1 1 6882600 12429000 28982 10427000 9316100 8925900 8165300 9400100 9875800 9630400 9867900 6407700 11591000 523280 10757000 8898500 9196400 8395500 9540400 9971800 9396100 9519400 3 3 1 3 3 3 3 3 3 3 3 1072300000 502200000 570080000 22066 454 20291 115095;115096 139554;139555;139556;139557 139557 333 4 YLGINSDGLVVGR Unmodified 1361.7303 0.73031409 1706 Q14331 FRG1 Protein FRG1 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.707 1 2 1 2 2 61.844 62.244 2 3.7849E-25 20806 20211116_3446_TMUAki_TMT10x_S_F7 224.58 180.77 17706000 28361000 56492 29318000 22997000 33047000 21154000 21200000 19889000 20548000 22095000 16486000 26467000 1518000 29897000 22003000 33169000 21515000 22133000 20368000 20095000 21246000 5 5 2 5 5 5 5 5 5 5 5 13245000 20676000 56492 21862000 17292000 27631000 16491000 15790000 14770000 14971000 16524000 12332000 19297000 1140200 22306000 16559000 27527000 16716000 16627000 15164000 14655000 15886000 4 4 2 4 4 4 4 4 4 4 4 4461600 7685300 0 7455700 5705900 5415300 4663200 5410700 5119300 5577400 5571500 4154100 7170300 377770 7591700 5444200 5642500 4798700 5506400 5204100 5440300 5360600 1 1 0 1 1 1 1 1 1 1 1 2446800000 1437900000 1008900000 22067 1706 20292 115097;115098;115099;115100 139558;139559;139560;139561;139562;139563 139562 6 YLGLLENVR Unmodified 1075.6026 0.60259438 245 O43795;O43795-2;Q9UBC5 MYO1B;MYO1A Unconventional myosin-Ib;Unconventional myosin-Ia yes no 0 0 0 0 By MS/MS 7 0 1 1 63.936 64.58 2 0.0027202 21289 20211116_3435_TMUAki_TMT10x_P_F7 82.563 43.239 6779400 11401000 0 9862700 7995000 15088000 8465800 9134300 8757200 8478500 9000800 6311200 10632000 431520 10248000 7668200 14914000 8571600 9567900 8904800 8307500 8675200 1 1 0 1 1 1 1 1 1 1 1 6779400 11401000 0 9862700 7995000 15088000 8465800 9134300 8757200 8478500 9000800 6311200 10632000 431520 10248000 7668200 14914000 8571600 9567900 8904800 8307500 8675200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 561150000 561150000 0 22068 245 20293 115101 139564 139564 1 YLHDESGLNR Unmodified 1202.568 0.56799978 1752 Q15019;Q15019-2;Q15019-3 SEPT2 Septin-2 yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 31.47 31.36 3 3.2247E-05 9591 20211116_3441_TMUAki_TMT10x_S_F3 125.75 96.66 1009400 1580900 81.838 1470200 1443600 1567400 1093500 897940 963550 915450 1237700 939790 1474700 78301 1509100 1374700 1575700 1123500 947280 995660 893360 1185500 2 2 1 2 2 2 2 2 2 2 2 728360 1186600 81.838 1066300 1115400 1323300 815480 667830 727670 690340 927810 678170 1106800 65882 1100100 1061900 1317500 840140 712760 751220 673290 888830 1 1 1 1 1 1 1 1 1 1 1 281080 394260 0 403940 328270 244160 278060 230110 235880 225110 309910 261620 367930 12418 409010 312750 258270 283370 234520 244440 220060 296670 1 1 0 1 1 1 1 1 1 1 1 42847000 15098000 27749000 22069 1752 20294 115102;115103 139565;139566 139566 2 YLHDESGLNRR Unmodified 1358.6691 0.66911081 1752 Q15019;Q15019-2;Q15019-3 SEPT2 Septin-2 yes no 0 0 0 1 By MS/MS 4.5 0.5 2 2 4 28.473 28.46 3;4 3.3087E-06 5732 20211116_3431_TMUAki_TMT10x_P_F4 120.06 73.6 511350 855010 5244 716190 730730 884400 596440 513420 518260 489300 632120 476130 797290 47301 742950 697400 882260 609590 540010 534700 478870 606260 3 3 1 3 3 3 3 3 3 3 3 511350 855010 5244 716190 730730 884400 596440 513420 518260 489300 632120 476130 797290 47301 742950 697400 882260 609590 540010 534700 478870 606260 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 46837000 46837000 0 22070 1752 20295 115104;115105;115106;115107 139567;139568 139568 2 YLHENLPIPQR Unmodified 1378.7357 0.73573382 1229 P54886;P54886-2 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes no 0 0 0 0 By MS/MS By MS/MS 5.14 1.81 1 1 1 2 2 3 4 42.92 43.073 3 0.00095849 12577 20211116_3435_TMUAki_TMT10x_P_F7 78.653 66.384 6754600 11454000 252170 12276000 10186000 11300000 7109600 12660000 11324000 10047000 11475000 6290800 10691000 813100 12451000 9702700 11603000 7502900 12725000 11341000 9920500 11065000 6 6 4 6 6 6 6 6 6 6 6 2451500 3986900 1938.6 4239600 5985700 6873700 3405300 4839400 4199800 3438800 3956200 2282400 3721100 229570 4346600 5673000 6794200 3613700 4981100 4229100 3416200 3824000 2 2 1 2 2 2 2 2 2 2 2 4303100 7466900 250230 8036700 4200200 4426400 3704300 7820300 7124500 6608600 7518700 4008400 6969500 583530 8104500 4029700 4808300 3889200 7743600 7112300 6504300 7240800 4 4 3 4 4 4 4 4 4 4 4 1663600000 1156100000 507550000 22071 1229 20296 115108;115109;115110;115111;115112;115113;115114 139569;139570;139571;139572;139573;139574 139570 6 YLHVGYIVPPAPEK Unmodified 1581.8555 0.8555146 286 O60749;O60749-2 SNX2 Sorting nexin-2 yes no 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 56.454 56.51 3 7.4694E-05 16725 20211116_3436_TMUAki_TMT10x_P_F8 91.858 74.915 18774000 35621000 416690 35129000 30330000 38933000 25983000 29277000 29468000 27964000 28857000 17483000 33236000 2106700 35929000 28998000 39210000 26691000 30215000 29804000 27365000 27856000 6 6 6 6 6 6 6 6 6 6 6 9940400 19177000 312020 18876000 19149000 28559000 16199000 15872000 15800000 14616000 15034000 9257800 17893000 1243900 19422000 18306000 28212000 16573000 16740000 16064000 14326000 14526000 3 3 3 3 3 3 3 3 3 3 3 8833500 16444000 104670 16254000 11181000 10374000 9784200 13405000 13668000 13348000 13824000 8225700 15343000 862790 16507000 10692000 10999000 10118000 13474000 13740000 13039000 13330000 3 3 3 3 3 3 3 3 3 3 3 1829500000 955930000 873580000 22072 286 20297 115115;115116;115117 139575;139576;139577;139578;139579;139580;139581 139576 7 YLIANATNPESK Unmodified 1319.6721 0.67213051 825 P27348 YWHAQ 14-3-3 protein theta yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 48.951 49.505 3 7.7526E-08 15630 20211116_3446_TMUAki_TMT10x_S_F7 107.18 86.794 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22073 825 20298 115118;115119 139582;139583 139583 2 YLIATSEQPIAALHR Unmodified 1681.9152 0.91515474 1107 P49591 SARS Serine--tRNA ligase, cytoplasmic yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 54.556 54.812 3 8.4196E-25 16090 20211116_3436_TMUAki_TMT10x_P_F8 197.36 175.05 15992000 27811000 277560 26247000 22470000 34403000 21493000 23345000 23125000 21304000 21715000 14892000 25945000 1675000 27008000 21538000 34296000 21903000 24233000 23404000 20891000 20991000 5 5 4 5 5 5 5 5 5 5 5 12023000 20602000 179940 19618000 17696000 30060000 16954000 17176000 16733000 15898000 15933000 11195000 19221000 1243700 20239000 16960000 29689000 17229000 18075000 17004000 15580000 15395000 3 3 2 3 3 3 3 3 3 3 3 3969400 7208400 97623 6629000 4773800 4343800 4538500 6169300 6391900 5405800 5781600 3696600 6724100 431340 6769500 4577300 4607100 4673300 6157500 6399900 5311100 5596200 2 2 2 2 2 2 2 2 2 2 2 1516100000 1059500000 456620000 22074 1107 20299 115120;115121;115122 139584;139585;139586;139587;139588 139586 5 YLIATSEQPIAALHRDEWLRPEDLPIK Unmodified 3173.6873 0.68733364 1107 P49591 SARS Serine--tRNA ligase, cytoplasmic yes yes 0 0 0 2 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 73.027 73.043 5 1.3547E-63 25322 20211116_3446_TMUAki_TMT10x_S_F7 222.72 203 16971000 26822000 195050 26493000 24958000 21858000 23939000 11796000 9709500 14118000 20421000 15802000 25026000 1576500 26981000 23909000 22327000 23895000 12570000 10880000 13692000 19367000 4 4 2 4 4 4 4 4 4 4 4 6023700 9329500 77340 8578900 6804300 10897000 8278600 5213300 4763100 5946900 7134700 5608600 8702600 497050 8839600 6560400 10831000 8211400 5609400 5083600 5777800 6809200 2 2 1 2 2 2 2 2 2 2 2 10947000 17492000 117710 17914000 18154000 10960000 15660000 6582400 4946400 8170800 13286000 10194000 16324000 1079500 18142000 17349000 11496000 15683000 6961000 5796900 7914600 12558000 2 2 1 2 2 2 2 2 2 2 2 6821700000 2714200000 4107500000 22075 1107 20300 115123;115124;115125 139589;139590;139591;139592 139591 4 YLIEIAK Unmodified 848.50076 0.50075507 1213 P53990;P53990-2;P53990-4;P53990-3;P53990-5;P53990-6 IST1 IST1 homolog yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 60.819 61.218 2 0.0016255 20394 20211116_3446_TMUAki_TMT10x_S_F7 135.35 65.083 18489000 28569000 43087 30109000 24499000 26959000 18915000 25255000 24877000 23225000 24355000 17215000 26664000 1607800 30560000 23349000 27620000 19663000 25703000 25029000 22766000 23510000 3 3 1 3 3 3 3 3 3 3 3 7721400 11768000 0 12115000 12802000 16906000 9047200 11078000 10528000 10220000 9749400 7189200 10982000 691980 12406000 12179000 16797000 9419100 11532000 10618000 10017000 9429000 1 1 0 1 1 1 1 1 1 1 1 10768000 16801000 43087 17994000 11697000 10053000 9868300 14177000 14349000 13005000 14605000 10026000 15682000 915840 18154000 11170000 10824000 10244000 14171000 14410000 12750000 14081000 2 2 1 2 2 2 2 2 2 2 2 1184500000 541570000 642940000 22076 1213 20301 115126;115127;115128 139593;139594;139595 139595 3 YLILPVHSNIPMMDQK 2 Oxidation (M) 1929.9692 0.9692405 2055 Q7L2E3;Q7L2E3-2;Q7L2E3-3 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 0 0 2 0 By MS/MS 8 0 1 1 56.804 56.766 3 0.00011511 16355 20211116_3447_TMUAki_TMT10x_S_F8 79.466 64.304 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22077 2055 20302 115129 139596 139596 2568;2569 1 YLIPNATQPESK Unmodified 1359.7034 0.70343063 895 P31946;P31946-2 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 5.91 0.793 4 4 3 5 6 50.368 50.643 2;3 4.0511E-22 13672 20211116_3434_TMUAki_TMT10x_P_F6 209.97 169.96 25912000 41654000 210050 57798000 49334000 45443000 29738000 40941000 45254000 35113000 44150000 24128000 38928000 2593200 57639000 46818000 46955000 31669000 41679000 45320000 34533000 42624000 9 9 7 9 9 9 9 9 9 9 9 11432000 18273000 98016 24152000 37901000 34362000 19028000 17734000 19096000 15171000 18184000 10644000 17073000 1361400 24377000 35870000 34002000 20290000 18793000 19391000 14922000 17570000 4 4 3 4 4 4 4 4 4 4 4 14480000 23381000 112040 33646000 11432000 11081000 10710000 23207000 26159000 19942000 25966000 13483000 21855000 1231800 33262000 10949000 12953000 11379000 22886000 25929000 19611000 25054000 5 5 4 5 5 5 5 5 5 5 5 3884600000 1861800000 2022800000 22078 895 20303 115130;115131;115132;115133;115134;115135;115136;115137;115138;115139;115140 139597;139598;139599;139600;139601;139602;139603;139604;139605;139606 139600 10 YLIVDEGHR Unmodified 1100.5615 0.56145784 2939 Q9NRZ9;Q9NRZ9-4;Q9NRZ9-3;Q9NRZ9-2 HELLS Lymphoid-specific helicase yes no 0 0 0 0 By MS/MS By MS/MS 3.33 1.11 2 1 2 1 2 4 36.979 36.963 3 4.9377E-05 9393 20211116_3431_TMUAki_TMT10x_P_F4 138.4 102.9 2338500 3769400 51765 3882700 3642200 3397300 2862300 2952700 2819000 2578000 3365000 2177800 3517600 258940 3945700 3475800 3480800 2942800 3013300 2889100 2533300 3229200 7 7 6 7 7 7 7 7 7 7 7 1203300 1915100 26347 1997600 2484400 2278200 1653500 1528700 1409900 1277600 1806700 1120600 1787300 142260 2036300 2362900 2286700 1713100 1584600 1459100 1258100 1730500 2 2 2 2 2 2 2 2 2 2 2 1135200 1854200 25418 1885100 1157800 1119000 1208900 1424000 1409000 1300400 1558400 1057200 1730300 116680 1909400 1112900 1194100 1229700 1428800 1430000 1275200 1498700 5 5 4 5 5 5 5 5 5 5 5 241920000 136640000 105280000 22079 2939 20304 115141;115142;115143;115144;115145;115146 139607;139608;139609;139610;139611;139612;139613 139608 7 YLKPSQAAQAIENCDR Unmodified 1862.8945 0.89449566 2135 Q8IUH3;Q8IUH3-2;Q8IUH3-3 RBM45 RNA-binding protein 45 yes no 0 0 0 1 By MS/MS 7 0 1 1 46.142 46.707 3 1.0915E-06 14031 20211116_3435_TMUAki_TMT10x_P_F7 101.9 92.108 924160 1556900 0 1638300 1615900 2365900 1288800 1510400 1361300 1367300 1373200 860420 1453100 79002 1676500 1540700 2346100 1326600 1574600 1382200 1341200 1324300 1 1 0 1 1 1 1 1 1 1 1 924160 1556900 0 1638300 1615900 2365900 1288800 1510400 1361300 1367300 1373200 860420 1453100 79002 1676500 1540700 2346100 1326600 1574600 1382200 1341200 1324300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 253090000 253090000 0 22080 2135 20305 115147 139614 139614 1 YLLADCNEAFIK Unmodified 1455.7068 0.70680145 255 O60216 RAD21 Double-strand-break repair protein rad21 homolog yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 69.038 68.978 2;3 5.7343E-15 21646 20211116_3445_TMUAki_TMT10x_S_F6 160.18 111.39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22081 255 20306 115148;115149 139615;139616 139616 2 YLLDHFLSMGINK Oxidation (M) 1565.7912 0.79119978 2082 Q7Z4S6;Q7Z4S6-5;Q7Z4S6-3;Q7Z4S6-2;Q7Z4S6-4;Q7Z4S6-6 KIF21A Kinesin-like protein KIF21A yes no 0 0 1 0 By MS/MS 3 0 1 1 76.382 76.246 3 0.00011478 27742 20211116_3441_TMUAki_TMT10x_S_F3 89.189 68.525 1859200 3490300 11648 3020100 2921800 2410600 2204700 2470300 2321300 2098900 2634000 1731200 3255000 179880 3105100 2784200 2494700 2277500 2497500 2367500 2065200 2531300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1859200 3490300 11648 3020100 2921800 2410600 2204700 2470300 2321300 2098900 2634000 1731200 3255000 179880 3105100 2784200 2494700 2277500 2497500 2367500 2065200 2531300 1 1 1 1 1 1 1 1 1 1 1 253240000 0 253240000 22082 2082 20307 115150 139617 139617 2590 1 YLLETSGNLDGLEYK Unmodified 1713.8461 0.8461317 1031 P43490 NAMPT Nicotinamide phosphoribosyltransferase yes yes 0 0 0 0 By MS/MS By MS/MS 3.67 1.15 2 2 2 3 6 3 73.472 73.398 2;3 1.3501E-29 24243 20211116_3433_TMUAki_TMT10x_P_F5 204.48 175.52 38237000 65081000 680280 61064000 45768000 68368000 47467000 49532000 50214000 51201000 52059000 35607000 60713000 3870300 62689000 43966000 68775000 48144000 51361000 51029000 49937000 50162000 10 10 8 10 10 10 10 10 10 10 10 23184000 37569000 531390 35189000 26574000 50863000 30350000 29719000 30611000 31269000 30356000 21591000 35047000 2444300 36301000 25606000 50374000 30596000 31329000 31121000 30475000 29291000 6 6 5 6 6 6 6 6 6 6 6 15052000 27512000 148890 25875000 19194000 17505000 17117000 19813000 19603000 19932000 21703000 14016000 25665000 1426000 26388000 18360000 18401000 17548000 20032000 19908000 19462000 20871000 4 4 3 4 4 4 4 4 4 4 4 4746500000 2890600000 1855900000 22083 1031 20308 115151;115152;115153;115154;115155;115156;115157;115158;115159 139618;139619;139620;139621;139622;139623;139624;139625;139626;139627;139628 139624 11 YLLGDMEGR Oxidation (M) 1068.491 0.49099502 1847 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 1 0 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 42.505 42.536 2 0.0062459 12828 20211116_3430_TMUAki_TMT10x_P_F3 79.809 52.926 6508200 10343000 36454 13095000 11596000 10490000 7178500 7973800 9025700 7387300 9698800 6059800 9661100 611510 13126000 11008000 10791000 7569600 8216600 9125200 7239000 9335200 4 4 3 4 4 4 4 4 4 4 4 3344400 5009900 17179 6441600 8732400 8166000 4616300 3911100 4771100 3836500 4883900 3113800 4680200 335450 6496200 8268400 8117000 4902500 4189000 4851000 3750000 4707900 2 2 1 2 2 2 2 2 2 2 2 3163900 5332700 19275 6653600 2863400 2323900 2562200 4062700 4254600 3550800 4814800 2946000 4980900 276060 6629700 2739200 2673500 2667100 4027600 4274200 3489000 4627400 2 2 2 2 2 2 2 2 2 2 2 660020000 411400000 248630000 22084 1847 20309 115160;115161;115162;115163;115164 139629;139630;139631;139632 139629 2461 4 YLLGDMEGR Unmodified 1052.4961 0.4960804 1847 Q16531 DDB1 DNA damage-binding protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 53.679 53.519 2 0.00058969 15822 20211116_3431_TMUAki_TMT10x_P_F4 117.72 84.328 9910300 16255000 34146 19431000 14821000 15009000 11702000 8457700 8087100 8098800 11507000 9227200 15180000 855730 19532000 14131000 15416000 11921000 8919100 8506800 7924500 10995000 3 3 1 3 3 3 3 3 3 3 3 7441800 11585000 34146 14194000 12555000 12975000 9625300 6200400 5880700 5894700 8204500 6929300 10820000 713860 14277000 11967000 13141000 9800600 6636900 6228900 5769700 7842600 2 2 1 2 2 2 2 2 2 2 2 2468500 4670200 0 5237100 2265700 2034500 2076800 2257300 2206400 2204100 3302600 2297900 4359900 141870 5254800 2163800 2275100 2120500 2282300 2277900 2154800 3151900 1 1 0 1 1 1 1 1 1 1 1 720400000 646780000 73621000 22085 1847 20309 115165;115166;115167;115168;115169 139633;139634;139635;139636 139634 4 YLLGTSLARPCIAR Unmodified 1589.8712 0.87118144 476 P00966 ASS1 Argininosuccinate synthase yes yes 0 0 0 1 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 51.877 52.177 3 2.2101E-19 15519 20211116_3433_TMUAki_TMT10x_P_F5 174.94 132.38 18716000 30550000 460100 32053000 24182000 30978000 21016000 29863000 30475000 28363000 28213000 17430000 28512000 2057000 32577000 23135000 31600000 21775000 30375000 30509000 27763000 27286000 8 8 8 8 8 8 8 8 8 8 8 7148400 10895000 217980 11738000 13165000 18701000 10100000 10470000 10584000 9922300 10101000 6657500 10169000 880060 12019000 12559000 18437000 10420000 11044000 10729000 9713200 9759000 3 3 3 3 3 3 3 3 3 3 3 11568000 19655000 242120 20315000 11017000 12277000 10916000 19393000 19891000 18441000 18112000 10772000 18343000 1177000 20558000 10576000 13163000 11356000 19330000 19780000 18050000 17527000 5 5 5 5 5 5 5 5 5 5 5 1893300000 1101000000 792290000 22086 476 20310 115170;115171;115172;115173;115174;115175 139637;139638;139639;139640;139641;139642;139643;139644 139637 8 YLLLNPK Unmodified 859.51674 0.51673948 132 O14776;O14776-2 TCERG1 Transcription elongation regulator 1 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 59.039 58.802 2 0.0057785 19661 20211116_3430_TMUAki_TMT10x_P_F3 106.76 10.804 24340000 41003000 511460 37624000 26288000 32059000 23550000 34126000 34136000 31783000 33779000 22666000 38247000 2521900 38538000 25168000 33049000 24359000 34523000 34252000 31138000 32596000 3 3 3 3 3 3 3 3 3 3 3 4933700 7086700 47933 7595900 8408900 11325000 6066300 6495900 7113400 5935400 6675700 4594100 6614500 502380 7768900 8006900 11199000 6308200 6831500 7175300 5819900 6453400 1 1 1 1 1 1 1 1 1 1 1 19406000 33916000 463530 30028000 17879000 20733000 17484000 27630000 27023000 25848000 27103000 18072000 31633000 2019500 30769000 17161000 21850000 18051000 27691000 27076000 25318000 26143000 2 2 2 2 2 2 2 2 2 2 2 635490000 245560000 389930000 22087 132 20311 115176;115177 139645;139646;139647 139645 3 YLLQYQEPIPCEQLVTALCDIK Unmodified 2693.3445 0.34446071 809 P25789;P25789-2 PSMA4 Proteasome subunit alpha type-4 yes no 0 0 0 0 By MS/MS By MS/MS 6.67 1.25 1 1 1 2 1 80.604 80.623 3 2.4234E-14 28514 20211116_3446_TMUAki_TMT10x_S_F7 130.05 121.76 5949500 9590400 43210 10284000 5607800 6810900 7064700 3154900 2712700 4062100 6342300 5539600 8951500 488060 10390000 5413600 7070500 6955200 3419300 3078900 3929800 6005900 3 3 1 3 3 3 3 3 3 3 3 1236200 1893900 0 1947100 1017600 1673600 1038100 665290 619640 830080 1329400 1150800 1767400 70452 1978500 974380 1699200 1039000 732250 673870 803910 1260500 1 1 0 1 1 1 1 1 1 1 1 4713300 7696500 43210 8336800 4590100 5137300 6026600 2489600 2093000 3232000 5012900 4388800 7184100 417610 8411800 4439200 5371400 5916200 2687100 2405000 3125900 4745400 2 2 1 2 2 2 2 2 2 2 2 1682400000 676440000 1005900000 22088 809 20312 115178;115179;115180 139648;139649;139650;139651 139650 4 YLMDEGAHLHIYDPK Oxidation (M) 1816.8454 0.8454202 283 O60701;O60701-3;O60701-2 UGDH UDP-glucose 6-dehydrogenase yes no 0 0 1 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 48.326 48.45 4 1.1971E-05 14047 20211116_3433_TMUAki_TMT10x_P_F5 99.927 86.947 15641000 23054000 72368 27345000 20367000 21847000 14508000 20057000 22603000 18006000 20380000 14563000 21528000 1268300 27511000 19375000 22555000 15273000 20422000 22562000 17670000 19728000 4 4 2 4 4 4 4 4 4 4 4 7716900 10764000 41545 12586000 14095000 15303000 8559800 9453000 10452000 7870800 9864400 7185000 10051000 703120 12752000 13374000 15291000 9030600 9859100 10530000 7752200 9534100 2 2 1 2 2 2 2 2 2 2 2 7924500 12290000 30823 14759000 6271900 6543400 5948400 10604000 12151000 10135000 10515000 7377900 11477000 565150 14760000 6001200 7264000 6242600 10563000 12032000 9918100 10194000 2 2 1 2 2 2 2 2 2 2 2 2236600000 1554300000 682310000 22089 283 20313 115181;115182;115183;115184;115185 139652;139653;139654;139655 139653 222 4 YLMEEDEDAYKK Oxidation (M) 1548.6654 0.66539015 1051 P46777 RPL5 60S ribosomal protein L5 yes yes 0 0 1 1 By MS/MS By MS/MS 3 0.707 1 2 1 3 1 43.076 42.957 3 0.0013317 12918 20211116_3430_TMUAki_TMT10x_P_F3 73.881 69.333 9127500 13470000 149400 19850000 28141000 16271000 11416000 9137700 12675000 7191900 13446000 8499600 12593000 1158100 19746000 26571000 16636000 12493000 9592400 12867000 7104200 12947000 5 5 4 5 5 5 5 5 5 5 5 6038800 8496100 135680 12388000 25638000 13987000 8847300 5885000 8179800 4879900 8818300 5623700 7942300 897460 12387000 24169000 13968000 9831500 6362200 8373400 4807300 8486900 4 4 3 4 4 4 4 4 4 4 4 3088600 4973900 13717 7462300 2503300 2284200 2568800 3252700 4494800 2312100 4627300 2875900 4650500 260650 7359500 2402800 2668100 2661800 3230100 4493100 2296900 4459700 1 1 1 1 1 1 1 1 1 1 1 1446000000 1287100000 158890000 22090 1051 20314 115186;115187;115188;115189 139656;139657;139658;139659;139660 139657 1359 5 YLMEEDEDAYKK Unmodified 1532.6705 0.67047553 1051 P46777 RPL5 60S ribosomal protein L5 yes yes 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 49.192 49.27 3 4.4594E-12 15711 20211116_3430_TMUAki_TMT10x_P_F3 171.57 156.55 20572000 27655000 417510 55683000 48721000 27214000 22696000 15082000 15150000 13646000 30025000 19157000 25909000 2488900 54400000 46087000 29207000 24149000 15904000 16270000 13387000 28504000 4 4 4 4 4 4 4 4 4 4 4 9381700 12302000 125700 23735000 41728000 21926000 16483000 7007800 7118800 6173400 12634000 8736200 11522000 1348000 23379000 39384000 22113000 17749000 7852900 7847600 6063700 12017000 2 2 2 2 2 2 2 2 2 2 2 11190000 15353000 291800 31948000 6992500 5288000 6213800 8074400 8031100 7472800 17391000 10421000 14388000 1140900 31021000 6702800 7094100 6399900 8050900 8422800 7323100 16487000 2 2 2 2 2 2 2 2 2 2 2 1449300000 1183100000 266210000 22091 1051 20314 115190;115191;115192 139661;139662;139663;139664 139661 4 YLNFFTK Unmodified 931.48035 0.48035398 635 P12004 PCNA Proliferating cell nuclear antigen yes yes 0 0 0 0 By MS/MS By MS/MS 2.88 1.05 1 2 2 3 5 3 61.916 61.779 2 0.0020561 23929 20211116_3429_TMUAki_TMT10x_P_F2 130.34 63.656 254490000 421560000 1753600 417340000 305950000 356200000 233990000 251250000 256520000 219550000 292790000 236960000 393340000 22721000 425140000 291610000 364280000 241810000 259800000 261260000 215730000 281320000 12 12 8 12 12 12 12 12 12 12 12 135310000 221940000 369030 219970000 184830000 254070000 133400000 132840000 138560000 115010000 154870000 125980000 207090000 11523000 225060000 175910000 254010000 138160000 140650000 141310000 113050000 148900000 7 7 3 7 7 7 7 7 7 7 7 119180000 199610000 1384600 197370000 121120000 102120000 100590000 118410000 117960000 104550000 137920000 110980000 186250000 11198000 200080000 115700000 110280000 103650000 119160000 119950000 102680000 132420000 5 5 5 5 5 5 5 5 5 5 5 20474000000 10818000000 9656100000 22092 635 20315 115193;115194;115195;115196;115197;115198;115199;115200 139665;139666;139667;139668;139669;139670;139671;139672;139673;139674;139675;139676 139666 12 YLNIFGESQPNPK Unmodified 1505.7514 0.75144346 3141 Q9UJS0;Q9UJS0-2 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes no 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 4 2 3 3 64.778 65.239 2;3 2.3861E-22 22097 20211116_3446_TMUAki_TMT10x_S_F7 201.75 176.91 30578000 49752000 48178 51557000 37122000 51903000 34298000 32091000 33036000 32193000 35923000 28470000 46431000 2489600 52474000 35514000 52409000 34898000 33631000 33766000 31437000 34565000 6 6 1 6 6 6 6 6 6 6 6 23295000 36570000 0 37986000 29725000 44896000 27407000 23761000 24699000 23955000 26546000 21688000 34129000 1840500 38755000 28432000 44836000 27838000 25231000 25311000 23388000 25551000 4 4 0 4 4 4 4 4 4 4 4 7283300 13182000 48178 13571000 7397000 7007000 6890200 8329900 8336700 8237800 9377600 6781800 12302000 649050 13719000 7082700 7572900 7060300 8399800 8454800 8049300 9014000 2 2 1 2 2 2 2 2 2 2 2 4580500000 2998500000 1582000000 22093 3141 20316 115201;115202;115203;115204;115205;115206 139677;139678;139679;139680;139681;139682;139683 139682 7 YLNTNPVGGLLEYAR Unmodified 1678.8679 0.8678702 1242 P55265;P55265-5;P55265-4;P55265-3;P55265-2 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 0 0 By MS/MS By MS/MS 5.18 3.19 4 3 4 5 6 75.441 75.422 2;3 1.0714E-72 23955 20211116_3447_TMUAki_TMT10x_S_F8 332.56 301.28 32737000 56620000 301550 51722000 39379000 50590000 40536000 33950000 33006000 35228000 41436000 30482000 52814000 2967900 53094000 37798000 51233000 40824000 35396000 34207000 34353000 39711000 10 10 6 10 10 10 10 10 10 10 10 17092000 28778000 266960 27115000 17792000 34196000 22223000 18656000 17460000 19141000 21379000 15917000 26847000 1675700 27885000 17187000 34050000 22163000 19767000 18110000 18674000 20503000 5 5 5 5 5 5 5 5 5 5 5 15644000 27842000 34593 24606000 21587000 16394000 18313000 15295000 15546000 16086000 20057000 14566000 25968000 1292200 25208000 20610000 17183000 18661000 15630000 16097000 15678000 19208000 5 5 1 5 5 5 5 5 5 5 5 9444700000 4531700000 4913000000 22094 1242 20317 115207;115208;115209;115210;115211;115212;115213;115214;115215;115216;115217 139684;139685;139686;139687;139688;139689;139690;139691;139692;139693;139694;139695;139696 139695 13 YLPELMAEK Unmodified 1092.5525 0.55253264 1538 Q07666;Q07666-2;Q07666-3;Q5VWX1;O75525;O75525-2 KHDRBS1;KHDRBS2;KHDRBS3 KH domain-containing, RNA-binding, signal transduction-associated protein 1;KH domain-containing, RNA-binding, signal transduction-associated protein 2;KH domain-containing, RNA-binding, signal transduction-associated protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 65.739 65.779 2 3.3848E-05 20013 20211116_3444_TMUAki_TMT10x_S_F5 124.23 90.434 27863000 43444000 134640 54131000 38129000 34095000 29555000 17580000 15600000 18645000 30398000 25943000 40578000 2391700 54168000 36340000 35599000 29995000 18739000 17006000 18166000 28866000 5 5 2 5 5 5 5 5 5 5 5 19399000 29948000 134640 36768000 30165000 29322000 23184000 12786000 11761000 13515000 20823000 18062000 27970000 1711400 36916000 28745000 29959000 23528000 13856000 12787000 13170000 19806000 4 4 2 4 4 4 4 4 4 4 4 8463400 13496000 0 17363000 7963900 4773300 6371400 4793800 3838000 5129700 9575600 7880100 12608000 680310 17252000 7595200 5639800 6467600 4883000 4219000 4996100 9059600 1 1 0 1 1 1 1 1 1 1 1 1966600000 1453500000 513140000 22095 1538 20318 115218;115219;115220;115221;115222 139697;139698;139699;139700;139701;139702 139701 6 YLPHSAGR Unmodified 899.46135 0.46134987 1055 P46782 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 3.43 1.4 1 1 1 2 2 6 1 27.846 27.765 2;3 0.00043936 5894 20211116_3433_TMUAki_TMT10x_P_F5 149.48 123.26 1417700 2328100 51979 1994400 1711300 2177100 1533900 1151900 1145100 1265600 1761500 1320400 2171100 170100 2060900 1639600 2183600 1553200 1226300 1203800 1231400 1680200 7 7 7 7 7 7 7 7 7 7 7 1261900 2029800 44207 1747700 1532700 2027900 1338500 1022100 1011400 1113100 1550800 1175300 1893000 149620 1807100 1467400 2026000 1357700 1092700 1062300 1083300 1479300 6 6 6 6 6 6 6 6 6 6 6 155790 298230 7772.6 246680 178650 149210 195440 129810 133710 152570 210780 145120 278090 20480 253840 172190 157580 195460 133650 141460 148070 200940 1 1 1 1 1 1 1 1 1 1 1 76801000 65021000 11780000 22096 1055 20319 115223;115224;115225;115226;115227;115228;115229 139703;139704;139705;139706;139707 139706 5 YLPPATQVVLISATLPHEILEMTNK Oxidation (M) 2793.4987 0.49865316 973 P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 0 0 1 0 By MS/MS By MS/MS 3.91 3.12 3 4 4 6 5 79.901 79.89 3;4 1.8881E-11 26249 20211116_3428_TMUAki_TMT10x_P_F1 102.21 90.016 27447000 46811000 180490 40020000 29767000 43785000 34662000 29189000 32317000 35526000 34848000 25555000 43654000 2137000 41363000 28654000 44045000 34831000 30604000 33070000 34435000 33538000 12 12 5 12 12 12 12 12 12 12 12 12046000 20126000 49690 16035000 11456000 24000000 13550000 13201000 14508000 15651000 15503000 11216000 18765000 959850 16767000 11035000 23716000 13665000 14040000 14753000 15185000 14925000 6 6 2 6 6 6 6 6 6 6 6 15401000 26685000 130800 23984000 18311000 19785000 21112000 15988000 17809000 19875000 19345000 14339000 24889000 1177200 24596000 17619000 20329000 21166000 16564000 18317000 19251000 18614000 6 6 3 6 6 6 6 6 6 6 6 13992000000 8332700000 5659500000 22097 973 20320 115230;115231;115232;115233;115234;115235;115236;115237;115238;115239;115240 139708;139709;139710;139711;139712;139713;139714;139715;139716;139717;139718;139719 139709 1247 12 YLQEEVNINR Unmodified 1276.6412 0.64116473 3118 Q9UHD8-5;Q9UHD8;Q9UHD8-2;Q9UHD8-7;Q9UHD8-3;Q9UHD8-4;Q9UHD8-9;Q9UHD8-8 SEPT9 Septin-9 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 45.08 45.011 2 1.0106E-08 12422 20211116_3431_TMUAki_TMT10x_P_F4 137.28 115.74 16469000 27347000 97389 27487000 18893000 20897000 16635000 22007000 21894000 19035000 22701000 15334000 25518000 1263000 27933000 18050000 21720000 17155000 22230000 22071000 18713000 21874000 7 7 2 7 7 7 7 7 7 7 7 4835800 8076100 97389 8125400 8493500 10305000 6074900 6647400 6928200 5726800 6689100 4503200 7536100 520640 8318300 8087600 10281000 6314900 6915600 7002400 5631000 6460100 3 3 2 3 3 3 3 3 3 3 3 11634000 19270000 0 19362000 10399000 10592000 10560000 15360000 14965000 13308000 16012000 10830000 17982000 742350 19615000 9962000 11438000 10840000 15315000 15069000 13082000 15414000 4 4 0 4 4 4 4 4 4 4 4 1943100000 991730000 951350000 22098 3118 20321 115241;115242;115243;115244;115245;115246;115247;115248 139720;139721;139722;139723;139724;139725;139726;139727 139722 8 YLQEEVNINRK Unmodified 1404.7361 0.73612775 3118 Q9UHD8-5;Q9UHD8;Q9UHD8-2;Q9UHD8-7;Q9UHD8-3;Q9UHD8-4;Q9UHD8-9;Q9UHD8-8 SEPT9 Septin-9 yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.745 3 2 1 2 4 41.493 41.577 3 1.0995E-16 10086 20211116_3444_TMUAki_TMT10x_S_F5 216.06 171.74 25037000 38217000 172720 41931000 30929000 30819000 23691000 18482000 19029000 18520000 26292000 23312000 35674000 2170800 42348000 29475000 31804000 24265000 19415000 19820000 18086000 25138000 6 6 3 6 6 6 6 6 6 6 6 18221000 27534000 121780 29776000 24289000 25766000 17657000 13574000 13779000 13571000 18891000 16966000 25701000 1568900 30158000 23121000 26222000 18137000 14416000 14369000 13255000 18065000 4 4 2 4 4 4 4 4 4 4 4 6815200 10682000 50940 12155000 6640700 5052300 6034200 4907600 5249600 4948100 7400500 6346000 9973100 601900 12190000 6354700 5581800 6128200 4998200 5451200 4830900 7072400 2 2 1 2 2 2 2 2 2 2 2 1675700000 1004900000 670740000 22099 3118 20322 115249;115250;115251;115252;115253;115254 139728;139729;139730;139731;139732;139733;139734;139735;139736 139735 9 YLQEFAPLGTGGGLYHFR Unmodified 2025.0108 0.010846043 2497 Q96IJ6;Q96IJ6-2 GMPPA Mannose-1-phosphate guanyltransferase alpha yes no 0 0 0 0 By MS/MS 2 0 2 2 72.368 72.255 3 1.9784E-07 23364 20211116_3440_TMUAki_TMT10x_S_F2 102.08 67.13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22100 2497 20323 115255;115256 139737;139738 139738 2 YLQEQNRPYSSQDVFGNLQR Unmodified 2441.1724 0.17238508 3071 Q9P2W1;Q9P2W1-2 PSMC3IP Homologous-pairing protein 2 homolog yes no 0 0 0 1 By MS/MS By MS/MS 7 0 2 1 1 52.179 52.872 3 7.702E-23 17051 20211116_3446_TMUAki_TMT10x_S_F7 154.11 131.99 2390600 3681600 111580 4433400 3706900 5522300 3510400 2949400 2553800 2596700 3059700 2226700 3438100 320620 4486000 3556200 5500700 3541400 3118000 2657900 2550600 2936000 1 1 1 1 1 1 1 1 1 1 1 2390600 3681600 111580 4433400 3706900 5522300 3510400 2949400 2553800 2596700 3059700 2226700 3438100 320620 4486000 3556200 5500700 3541400 3118000 2657900 2550600 2936000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 445550000 445550000 0 22101 3071 20324 115257;115258 139739;139740 139740 2 YLQLAEELIRPER Unmodified 1628.8886 0.88860564 1716 Q14566 MCM6 DNA replication licensing factor MCM6 yes yes 0 0 0 1 By MS/MS By MS/MS 5 1.78 1 2 2 2 2 2 1 5 7 75.391 75.373 3 2.4002E-25 24167 20211116_3445_TMUAki_TMT10x_S_F6 221.91 180.38 57888000 94724000 877000 93639000 64141000 77194000 64572000 51329000 51428000 55181000 66996000 53905000 88383000 5549500 95358000 61555000 79073000 65069000 53608000 53447000 53734000 64147000 17 17 15 17 17 17 17 17 17 17 17 24806000 39792000 255410 38712000 24183000 42841000 27526000 21747000 21627000 23470000 27962000 23099000 37127000 2285900 39631000 23287000 42915000 27564000 23227000 22485000 22851000 26778000 7 7 7 7 7 7 7 7 7 7 7 33082000 54931000 621580 54927000 39958000 34353000 37046000 29582000 29801000 31711000 39034000 30806000 51257000 3263600 55727000 38268000 36158000 37505000 30381000 30962000 30883000 37369000 10 10 8 10 10 10 10 10 10 10 10 15988000000 7993800000 7994200000 22102 1716 20325 115259;115260;115261;115262;115263;115264;115265;115266;115267;115268;115269;115270 139741;139742;139743;139744;139745;139746;139747;139748;139749;139750;139751;139752;139753;139754;139755;139756;139757 139755 17 YLQQIFESQR Unmodified 1310.6619 0.66190017 2475 Q96GM5;Q96GM5-2 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes no 0 0 0 0 By MS/MS By MS/MS 7 0 2 1 1 61.931 62.517 2 8.6174E-05 20373 20211116_3435_TMUAki_TMT10x_P_F7 125.83 94.07 9906100 15837000 156140 16677000 12404000 17061000 11834000 13087000 11490000 12225000 13253000 9224700 14781000 1001800 16960000 11889000 17267000 12023000 13480000 11767000 11975000 12730000 3 3 3 3 3 3 3 3 3 3 3 5871400 9351400 149200 9797400 7690200 12492000 7398300 8020300 6862500 7570500 8102200 5468000 8727500 651300 10004000 7375400 12459000 7503100 8366700 7048800 7412300 7777500 2 2 2 2 2 2 2 2 2 2 2 4034700 6485400 6945.6 6879500 4713700 4568900 4435700 5066400 4627800 4654500 5151000 3756700 6053000 350490 6955900 4513200 4808200 4519800 5113700 4718200 4562800 4952800 1 1 1 1 1 1 1 1 1 1 1 626320000 351500000 274820000 22103 2475 20326 115271;115272 139758;139759;139760 139758 3 YLQSLLAEVERR Unmodified 1475.8096 0.80962704 414 O95232 LUC7L3 Luc7-like protein 3 yes yes 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 3 1 72.715 72.792 3 1.4437E-24 23401 20211116_3436_TMUAki_TMT10x_P_F8 252.04 207.42 9148800 15144000 44816 13488000 8542200 14414000 11456000 9379600 10199000 10972000 10665000 8518600 14125000 760200 13891000 8264600 14513000 11429000 9838200 10447000 10650000 10274000 4 4 1 4 4 4 4 4 4 4 4 3985600 6313500 0 5575500 4453700 8280000 5010800 4277700 4649700 4824300 4381900 3710800 5888400 316170 5780500 4283000 8178400 5042400 4567700 4736600 4689200 4235400 2 2 0 2 2 2 2 2 2 2 2 5163200 8830600 44816 7912400 4088500 6133500 6445400 5101900 5549300 6147200 6282900 4807700 8236400 444030 8110200 3981500 6335000 6386800 5270600 5710700 5960600 6038200 2 2 1 2 2 2 2 2 2 2 2 2307600000 1388000000 919650000 22104 414 20327 115273;115274;115275;115276 139761;139762;139763;139764;139765 139763 5 YLQTVQYGVHGNFPR Unmodified 1777.89 0.89000263 1712 Q14527 HLTF Helicase-like transcription factor yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 49.713 49.515 3 2.6149E-20 14104 20211116_3440_TMUAki_TMT10x_S_F2 151.3 130.84 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22105 1712 20328 115277;115278 139766;139767 139767 2 YLSAQKPLLNDGQFR Unmodified 1748.921 0.9209684 789 P23786 CPT2 Carnitine O-palmitoyltransferase 2, mitochondrial yes yes 0 0 0 1 By MS/MS 2 0 1 1 54.021 53.772 3 3.2612E-14 17137 20211116_3429_TMUAki_TMT10x_P_F2 147.92 126.61 3053100 5443400 82458 5655600 5907600 7877600 4325400 4740800 4374400 4220500 4506700 2843300 5080100 369950 5787900 5629700 7817600 4471700 4962900 4452700 4143400 4343400 1 1 1 1 1 1 1 1 1 1 1 3053100 5443400 82458 5655600 5907600 7877600 4325400 4740800 4374400 4220500 4506700 2843300 5080100 369950 5787900 5629700 7817600 4471700 4962900 4452700 4143400 4343400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 548170000 548170000 0 22106 789 20329 115279 139768 139768 1 YLSEVASGDNK Unmodified 1181.5564 0.55643205 895 P31946;P31946-2 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes no 0 0 0 0 By MS/MS 4 0 1 1 44.62 44.831 3 0.011517 12673 20211116_3442_TMUAki_TMT10x_S_F4 58.829 43.563 2747500 4277400 0 4576700 2665200 2033300 2718500 3267400 3428600 2865900 3835100 2558100 3992400 222210 4609800 2556600 2256000 2776700 3247800 3471400 2815500 3687000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2747500 4277400 0 4576700 2665200 2033300 2718500 3267400 3428600 2865900 3835100 2558100 3992400 222210 4609800 2556600 2256000 2776700 3247800 3471400 2815500 3687000 1 1 0 1 1 1 1 1 1 1 1 100470000 0 100470000 22107 895 20330 115280 139769 139769 1 YLSEVASGDNKQTTVSNSQQAYQEAFEISKK Unmodified 3449.6587 0.65867187 895 P31946;P31946-2 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes no 0 0 0 2 By MS/MS By MS/MS 7.5 0.5 4 4 4 4 63.152 63.478 4;5 2.2797E-35 19603 20211116_3436_TMUAki_TMT10x_P_F8 171.31 162.9 47764000 94228000 205430 58721000 92595000 113990000 69620000 125600000 116150000 103900000 87257000 44470000 87792000 3755200 63240000 88180000 112980000 73261000 126460000 115100000 102370000 85069000 14 14 4 14 14 14 14 14 14 14 14 20303000 41763000 108610 24057000 36003000 76337000 43308000 58499000 53497000 46843000 35483000 18904000 38903000 1849200 26574000 34701000 74141000 43862000 60029000 53339000 46230000 34787000 7 7 3 7 7 7 7 7 7 7 7 27461000 52465000 96815 34664000 56592000 37658000 26313000 67098000 62656000 57058000 51775000 25566000 48889000 1906000 36665000 53478000 38840000 29399000 66434000 61766000 56140000 50282000 7 7 1 7 7 7 7 7 7 7 7 15931000000 8156100000 7775000000 22108 895 20331 115281;115282;115283;115284;115285;115286;115287;115288 139770;139771;139772;139773;139774;139775;139776;139777;139778;139779;139780;139781;139782;139783 139775 14 YLSFTPPEK Unmodified 1080.5492 0.54916182 1606 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes yes 0 0 0 0 By MS/MS 7 0 1 1 58.447 59.178 2 8.0071E-05 19008 20211116_3435_TMUAki_TMT10x_P_F7 141.52 95.169 7932100 13175000 82360 14555000 16077000 19109000 10657000 10205000 11253000 9325800 11076000 7386200 12299000 848460 14819000 15284000 18986000 11112000 10799000 11415000 9144300 10690000 2 2 2 2 2 2 2 2 2 2 2 7932100 13175000 82360 14555000 16077000 19109000 10657000 10205000 11253000 9325800 11076000 7386200 12299000 848460 14819000 15284000 18986000 11112000 10799000 11415000 9144300 10690000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 465300000 465300000 0 22109 1606 20332 115289 139784;139785 139784 2 YLSNAYAR Unmodified 956.47158 0.4715802 80 O00299 CLIC1 Chloride intracellular channel protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 7.25 0.829 1 1 2 3 1 34.379 34.697 2 0.0014497 7257 20211116_3434_TMUAki_TMT10x_P_F6 121.67 92.522 464350 820730 7487.6 816240 1073200 860400 598760 506140 545440 465120 665970 432370 765820 49142 833680 1017200 865840 630510 531260 561500 455950 638700 4 4 2 4 4 4 4 4 4 4 4 378250 656720 7487.6 642990 965200 782320 497930 396450 414070 370610 521010 352230 612740 44393 659010 914040 779710 526910 421790 428710 363020 499290 3 3 2 3 3 3 3 3 3 3 3 86101 164020 0 173250 107980 78082 100830 109690 131370 94506 144960 80147 153080 4749.4 174670 103180 86125 103600 109480 132790 92925 139410 1 1 0 1 1 1 1 1 1 1 1 54617000 44043000 10574000 22110 80 20333 115290;115291;115292;115293 139786;139787;139788;139789 139786 4 YLTAEAFGFK Unmodified 1145.5757 0.57571092 1859 Q16658 FSCN1 Fascin yes yes 0 0 0 0 By MS/MS By MS/MS 5.35 2.81 4 1 1 2 4 5 9 8 72 72.011 2;3 3.1882E-25 22544 20211116_3447_TMUAki_TMT10x_S_F8 262.83 185.78 284580000 460270000 2982000 476870000 310450000 345580000 294790000 231930000 204770000 238270000 313610000 264980000 429540000 24834000 483350000 297340000 357600000 297050000 241730000 216120000 232450000 299160000 26 26 13 26 26 26 26 26 26 26 26 121070000 197900000 1087300 198790000 132530000 206950000 138050000 100970000 89819000 104600000 132540000 112720000 184670000 9713400 202860000 127180000 207940000 138250000 108110000 95002000 102010000 126530000 13 13 5 13 13 13 13 13 13 13 13 163520000 262370000 1894800 278090000 177920000 138620000 156740000 130960000 114950000 133670000 181080000 152260000 244870000 15121000 280500000 170150000 149650000 158800000 133620000 121120000 130440000 172630000 13 13 8 13 13 13 13 13 13 13 13 40536000000 23178000000 17358000000 22111 1859 20334 115294;115295;115296;115297;115298;115299;115300;115301;115302;115303;115304;115305;115306;115307;115308;115309;115310 139790;139791;139792;139793;139794;139795;139796;139797;139798;139799;139800;139801;139802;139803;139804;139805;139806;139807;139808;139809;139810;139811;139812;139813;139814;139815;139816;139817;139818 139813 29 YLTEHPDPNNENIVGYNNK Unmodified 2230.0291 0.029074882 1997 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 0 By MS/MS 4 0 2 2 47.499 47.672 3;4 4.3429E-32 13855 20211116_3442_TMUAki_TMT10x_S_F4 195.28 185.49 2308500 3961500 14200 4870300 1992300 1780800 1641400 3573600 3602100 3172700 3703000 2149600 3699900 200200 4858100 1902300 2045000 1744000 3530900 3582300 3115100 3569100 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2308500 3961500 14200 4870300 1992300 1780800 1641400 3573600 3602100 3172700 3703000 2149600 3699900 200200 4858100 1902300 2045000 1744000 3530900 3582300 3115100 3569100 2 2 2 2 2 2 2 2 2 2 2 196390000 0 196390000 22112 1997 20335 115311;115312 139819;139820 139820 2 YLTGTYVQEESPEGGR Unmodified 1784.8217 0.82170787 2530 Q9UPQ3;Q96P47;Q9UPQ3-2;Q96P47-3;Q96P47-6;Q9UPQ3-3;Q96P47-2;Q96P47-4 AGAP1;AGAP3 Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1;Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 47.621 47.303 3 0.00014029 16014 20211116_3441_TMUAki_TMT10x_S_F3 77.746 64.546 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22113 2530 20336 115313;115314 139821;139822 139822 2 YLTMDDLTTALEGNR Oxidation (M) 1727.8036 0.80361496 1223 P54687;P54687-5;P54687-3;P54687-4;P54687-2 BCAT1 Branched-chain-amino-acid aminotransferase, cytosolic yes no 0 0 1 0 By MS/MS By MS/MS 4.1 0.831 3 3 4 5 5 65.941 65.917 2;3 9.1025E-20 21397 20211116_3442_TMUAki_TMT10x_S_F4 154 140.03 4267700 6803900 0 7305600 5209600 6418000 5037700 5245400 4451100 4575400 5286100 3973400 6350600 331330 7404200 4988600 6566600 5100800 5372300 4583500 4496200 5073500 2 2 0 2 2 2 2 2 2 2 2 2345700 3655900 0 4149000 2826600 4601200 3074300 2829600 2409400 2439300 2761500 2184100 3413200 200270 4204600 2716500 4619700 3084900 2954700 2492800 2398400 2653100 1 1 0 1 1 1 1 1 1 1 1 1922000 3148000 0 3156600 2383000 1816800 1963400 2415800 2041700 2136100 2524600 1789300 2937400 131060 3199600 2272100 1946900 2015900 2417700 2090800 2097800 2420400 1 1 0 1 1 1 1 1 1 1 1 792380000 361060000 431330000 22114 1223 20337 115315;115316;115317;115318;115319;115320;115321;115322;115323;115324 139823;139824;139825;139826;139827;139828;139829;139830;139831;139832 139830 1642 10 YLTNAYSR Unmodified 986.48214 0.48214489 3342 Q9Y696 CLIC4 Chloride intracellular channel protein 4 yes yes 0 0 0 0 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 35.497 35.861 2 0.0019237 7766 20211116_3447_TMUAki_TMT10x_S_F8 114.64 93.111 312790 539560 0 533950 1030200 742300 458720 369340 408720 323480 457990 291190 503440 30277 548230 973040 734970 493640 392970 419740 317820 440280 2 2 0 2 2 2 2 2 2 2 2 312790 539560 0 533950 1030200 742300 458720 369340 408720 323480 457990 291190 503440 30277 548230 973040 734970 493640 392970 419740 317820 440280 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 47003000 47003000 0 22115 3342 20338 115325;115326;115327 139833;139834;139835 139835 3 YLTNAYSRDEFTNTCPSDKEVEIAYSDVAK Unmodified 3485.5933 0.59329442 3342 Q9Y696 CLIC4 Chloride intracellular channel protein 4 yes yes 0 0 0 2 By MS/MS By MS/MS 5 1.41 2 1 2 1 64.473 64.668 4 2.858E-35 21346 20211116_3435_TMUAki_TMT10x_P_F7 172.18 166.34 8714300 15798000 44972 13445000 12532000 19217000 12871000 13466000 11800000 11988000 12928000 8114000 14732000 785120 13968000 12026000 19092000 13005000 13937000 12092000 11769000 12437000 3 3 1 3 3 3 3 3 3 3 3 6075600 10858000 44972 9206700 7543000 16005000 9381300 9967600 8330500 8277800 9225800 5657200 10125000 560120 9610600 7281100 15750000 9387200 10388000 8552600 8154200 8872100 2 2 1 2 2 2 2 2 2 2 2 2638800 4940100 0 4238200 4989200 3211800 3489900 3497900 3469800 3710200 3702500 2456700 4607000 225000 4357900 4744500 3341700 3617700 3548300 3539000 3614900 3564500 1 1 0 1 1 1 1 1 1 1 1 2972400000 2222700000 749740000 22116 3342 20339 115328;115329;115330 139836;139837;139838 139837 3 YLTTAVITNK Unmodified 1122.6285 0.62847478 1272 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 55.187 55.037 3 0.0015069 16052 20211116_3428_TMUAki_TMT10x_P_F1 78.655 51.557 4936000 7644700 140390 8079300 6637100 7791200 6195400 6591900 6088600 5664300 6785200 4597000 7134900 563900 8207200 6361400 7928000 6304100 6735000 6223500 5570200 6523900 2 2 2 2 2 2 2 2 2 2 2 2603300 3865600 90353 4449400 4241700 5572500 3573200 3605900 3368000 3051000 3618300 2424600 3609200 322980 4514700 4055800 5563500 3653000 3748900 3444200 3002600 3482700 1 1 1 1 1 1 1 1 1 1 1 2332700 3779000 50039 3629900 2395400 2218700 2622300 2986000 2720500 2613300 3166900 2172400 3525700 240910 3692500 2305500 2364500 2651100 2986100 2779200 2567600 3041100 1 1 1 1 1 1 1 1 1 1 1 356800000 250030000 106760000 22117 1272 20340 115331;115332 139839;139840 139839 2 YLTVAAVFR Unmodified 1038.5862 0.58621603 1418;539;488 P07437;P68371;P04350 TUBB;TUBB4B;TUBB4A Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain no no 0 0 0 0 By MS/MS By MS/MS 4 0.816 2 2 2 3 3 66.647 66.533 2 6.0687E-06 21157 20211116_3431_TMUAki_TMT10x_P_F4 160.54 110.5 48364000 89498000 301880 76972000 83785000 117900000 65563000 102030000 97146000 74362000 75187000 45033000 83464000 4632300 80021000 79887000 117220000 68434000 103710000 96668000 73765000 73210000 8 8 5 8 8 8 8 8 8 8 8 26625000 49007000 76908 42273000 55805000 95237000 44891000 60064000 56647000 42679000 41708000 24790000 45703000 2576000 44393000 53231000 92964000 46470000 62324000 56584000 42399000 40697000 4 4 3 4 4 4 4 4 4 4 4 21739000 40491000 224970 34699000 27980000 22659000 20671000 41961000 40499000 31682000 33479000 20243000 37761000 2056300 35628000 26656000 24260000 21964000 41381000 40084000 31366000 32513000 4 4 2 4 4 4 4 4 4 4 4 3786700000 2361100000 1425600000 22118 539;1418;488 20341 115333;115334;115335;115336;115337;115338 139841;139842;139843;139844;139845;139846;139847;139848 139843 8 YLTVATVFR Unmodified 1068.5968 0.59678072 1640;2673 Q13509;Q13509-2;Q9BUF5 TUBB3;TUBB6 Tubulin beta-3 chain;Tubulin beta-6 chain no no 0 0 0 0 By MS/MS By MS/MS 3 1.22 1 2 2 2 1 5 3 64.537 64.386 2 6.1269E-06 20195 20211116_3431_TMUAki_TMT10x_P_F4 163.2 111.21 68788000 127220000 343930 112130000 94734000 129320000 75972000 114130000 110090000 90955000 99878000 64045000 118650000 5703400 115710000 90340000 130340000 79099000 116120000 110140000 89786000 96664000 9 9 3 9 9 9 9 9 9 9 9 38450000 69251000 85561 59519000 61249000 99386000 50632000 59788000 57655000 49820000 54278000 35797000 64582000 3087100 62003000 58434000 97899000 52131000 62488000 58227000 49067000 52465000 6 6 2 6 6 6 6 6 6 6 6 30338000 57967000 258370 52608000 33485000 29930000 25340000 54346000 52434000 41135000 45600000 28248000 54070000 2616300 53708000 31906000 32438000 26968000 53627000 51915000 40719000 44200000 3 3 1 3 3 3 3 3 3 3 3 7409400000 4328300000 3081100000 22119 1640;2673 20342 115339;115340;115341;115342;115343;115344;115345;115346 139849;139850;139851;139852;139853;139854;139855;139856;139857 139852 9 YLVIDEAHR Unmodified 1114.5771 0.57710791 260;844 P28370-2;P28370;O60264 SMARCA1;SMARCA5 Probable global transcription activator SNF2L1;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 no no 0 0 0 0 By MS/MS By MS/MS 5.25 2.05 2 2 3 1 1 5 2 5 11 38.624 38.723 2;3 1.0567E-05 10174 20211116_3442_TMUAki_TMT10x_S_F4 155.88 124.57 5963400 9407800 236230 10097000 8982500 9659700 6922700 7947800 7853500 7521200 8694300 5554200 8781100 756850 10245000 8575300 9829100 7158500 8154400 7978700 7363200 8361000 16 16 16 16 16 16 16 16 16 16 16 2793200 4303100 131290 4740600 5829900 6824000 3985800 3977900 3952200 3695500 4234100 2601700 4016900 396470 4836400 5551600 6759300 4138300 4179600 4032100 3620800 4075800 8 8 8 8 8 8 8 8 8 8 8 3170200 5104700 104940 5356100 3152600 2835700 2936900 3969900 3901300 3825800 4460200 2952500 4764200 360380 5408700 3023800 3069800 3020100 3974800 3946600 3742400 4285300 8 8 8 8 8 8 8 8 8 8 8 1304800000 844090000 460670000 22120 844;260 20343 115347;115348;115349;115350;115351;115352;115353;115354;115355;115356;115357;115358;115359;115360;115361;115362 139858;139859;139860;139861;139862;139863;139864;139865;139866;139867;139868;139869;139870;139871;139872;139873;139874;139875;139876;139877;139878 139870 21 YLVLDCVPEER Unmodified 1391.6755 0.67550132 132 O14776;O14776-2 TCERG1 Transcription elongation regulator 1 yes no 0 0 0 0 By MS/MS 4 0 1 1 60.063 59.951 2 0.00030663 18921 20211116_3442_TMUAki_TMT10x_S_F4 94.692 73.186 7424800 13842000 58656 13083000 8938800 8029800 6813500 14084000 10301000 12736000 10755000 6913600 12914000 684730 13325000 8520700 8628000 7130300 13974000 10343000 12494000 10361000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7424800 13842000 58656 13083000 8938800 8029800 6813500 14084000 10301000 12736000 10755000 6913600 12914000 684730 13325000 8520700 8628000 7130300 13974000 10343000 12494000 10361000 3 3 2 3 3 3 3 3 3 3 3 626330000 0 626330000 22121 132 20344 115363 139879;139880;139881 139879 3 YLVLDEADR Unmodified 1092.5451 0.54513908 104 O00571;O00571-2;O15523;O15523-2;Q9NQI0;Q9NQI0-3;Q9NQI0-2;Q9NQI0-4 DDX3X;DDX3Y;DDX4 ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX4 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 52.132 52.013 2 5.0093E-05 17914 20211116_3441_TMUAki_TMT10x_S_F3 149.19 127.06 62730000 93570000 41991 109240000 76440000 83640000 62802000 59780000 63145000 63117000 71743000 58400000 87369000 4430600 109950000 72889000 86250000 64426000 62084000 64529000 61506000 68942000 10 10 4 10 10 10 10 10 10 10 10 35556000 52407000 11767 60571000 54013000 62251000 38767000 33477000 36636000 35884000 40578000 33101000 48931000 2605800 61241000 51368000 62667000 40054000 35561000 37504000 34947000 39022000 5 5 2 5 5 5 5 5 5 5 5 27174000 41163000 30225 48669000 22427000 21389000 24034000 26303000 26508000 27233000 31165000 25299000 38438000 1824700 48712000 21521000 23583000 24372000 26523000 27025000 26559000 29919000 5 5 2 5 5 5 5 5 5 5 5 3302300000 2012700000 1289600000 22122 104 20345 115364;115365;115366;115367;115368;115369;115370;115371 139882;139883;139884;139885;139886;139887;139888;139889;139890;139891 139889 10 YLVMDEADR Oxidation (M) 1126.4965 0.49647433 2779 Q9H0S4;Q9H0S4-2 DDX47 Probable ATP-dependent RNA helicase DDX47 yes no 0 0 1 0 By MS/MS 2 0 1 1 36.93 37.029 2 0.011389 8953 20211116_3440_TMUAki_TMT10x_S_F2 73.665 51.705 130510 210870 0 270470 118770 110860 141510 129380 148150 133810 198220 121510 196980 10084 269330 114410 123200 142550 130750 152200 130510 189660 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 130510 210870 0 270470 118770 110860 141510 129380 148150 133810 198220 121510 196980 10084 269330 114410 123200 142550 130750 152200 130510 189660 1 1 0 1 1 1 1 1 1 1 1 6433600 0 6433600 22123 2779 20346 115372 139892 139892 2945 1 YLVNDACVLAGRPLVSASALR Unmodified 2244.2049 0.20487118 428 O95396 MOCS3 Adenylyltransferase and sulfurtransferase MOCS3;Molybdopterin-synthase adenylyltransferase;Molybdopterin-synthase sulfurtransferase yes yes 0 0 0 1 By MS/MS By MS/MS 3 0 2 1 1 66.988 66.612 3 1.5094E-77 23958 20211116_3441_TMUAki_TMT10x_S_F3 276.77 232.04 6159500 10660000 26791 10377000 8272400 8886400 7387600 8133000 6757700 7521200 8730900 5735100 9945900 535400 10584000 7909400 9127900 7520300 8288800 6972300 7370800 8361300 3 3 2 3 3 3 3 3 3 3 3 1886000 3058300 0 3008800 1895300 4317100 2579800 2512400 2000800 2334800 2624800 1755800 2853500 126660 3092500 1832600 4276700 2563100 2640200 2082900 2287600 2512700 1 1 0 1 1 1 1 1 1 1 1 4273500 7601800 26791 7367700 6377100 4569300 4807800 5620500 4756900 5186500 6106100 3979200 7092400 408730 7491000 6076800 4851200 4957200 5648500 4889400 5083300 5848500 2 2 2 2 2 2 2 2 2 2 2 979110000 599220000 379890000 22124 428 20347 115373;115374 139893;139894;139895 139895 3 YLVPQAR Unmodified 845.47594 0.4759373 955 P36776;P36776-3;P36776-2 LONP1 Lon protease homolog, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 36.592 37.102 2 0.023322 8743 20211116_3436_TMUAki_TMT10x_P_F8 81.1 38.053 277950 456370 7380 476950 271950 262310 286810 264470 283140 254680 365810 258850 425920 29838 481910 261580 280510 290040 268490 291140 249140 350330 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 277950 456370 7380 476950 271950 262310 286810 264470 283140 254680 365810 258850 425920 29838 481910 261580 280510 290040 268490 291140 249140 350330 1 1 1 1 1 1 1 1 1 1 1 23586000 0 23586000 22125 955 20348 115375;115376 139896;139897 139896 2 YLVQDTDEFILPTGANK Unmodified 1922.9626 0.96255845 141 O14925;Q5SRD1;Q5SRD1-2 TIMM23;TIMM23B Mitochondrial import inner membrane translocase subunit Tim23;Putative mitochondrial import inner membrane translocase subunit Tim23B yes no 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 76.237 76.222 3 6.5585E-11 24235 20211116_3444_TMUAki_TMT10x_S_F5 124.92 113.65 39140000 65409000 862730 62895000 53915000 55003000 45618000 34412000 28432000 32978000 46737000 36450000 61024000 4252400 64222000 51539000 56057000 46174000 35984000 30327000 32267000 44519000 11 11 10 11 11 11 11 11 11 11 11 21420000 34635000 300710 32926000 20328000 35698000 23356000 18043000 15870000 18022000 24327000 19946000 32312000 2037200 33752000 19585000 35799000 23301000 19235000 16773000 17602000 23205000 6 6 5 6 6 6 6 6 6 6 6 17720000 30773000 562020 29968000 33587000 19304000 22262000 16370000 12562000 14956000 22411000 16503000 28712000 2215100 30470000 31954000 20258000 22873000 16749000 13554000 14665000 21314000 5 5 5 5 5 5 5 5 5 5 5 2812700000 1294800000 1517900000 22126 141 20349 115377;115378;115379;115380;115381;115382 139898;139899;139900;139901;139902;139903;139904;139905;139906;139907;139908 139906 11 YLYEIAR Unmodified 926.48617 0.48616764 38 CON__P02769;P02768;CON__P02768-1 ALB Serum albumin yes no 0 0 0 0 By MS/MS By MS/MS 5.29 1.03 2 2 2 1 3 4 49.675 49.874 2 0.001289 13733 20211116_3445_TMUAki_TMT10x_S_F6 139.27 0 + 35851000 51113000 502910 54916000 74848000 64429000 50435000 100550000 107060000 77405000 63126000 33384000 47708000 3814600 55897000 71173000 65861000 54188000 99719000 104880000 76551000 62256000 7 7 5 7 7 7 7 7 7 7 7 20310000 27850000 446900 30830000 59289000 54290000 38669000 58658000 60867000 45050000 34994000 18914000 25998000 2646300 31592000 56358000 53958000 40989000 59012000 60033000 44559000 34558000 4 4 4 4 4 4 4 4 4 4 4 15541000 23262000 56016 24086000 15559000 10139000 11767000 41894000 46197000 32355000 28132000 14470000 21709000 1168400 24305000 14815000 11903000 13200000 40707000 44850000 31992000 27698000 3 3 1 3 3 3 3 3 3 3 3 6024500000 3182400000 2842100000 22127 38 20350 115383;115384;115385;115386;115387;115388;115389 139909;139910;139911;139912;139913;139914;139915 139914 7 YLYEIARR Unmodified 1082.5873 0.58727866 38 CON__P02769;P02768;CON__P02768-1 ALB Serum albumin yes no 0 0 0 1 By MS/MS By MS/MS 3 2.92 2 1 1 1 3 40.711 40.666 3 0.00070487 10262 20211116_3428_TMUAki_TMT10x_P_F1 113.26 0 + 12207000 1540800 0 1688500 1141000 853390 860270 2543800 2620700 1936300 1797800 11362000 1438300 345090 1699600 1053700 958870 941790 2482800 2559900 1916100 1759800 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12207000 1540800 0 1688500 1141000 853390 860270 2543800 2620700 1936300 1797800 11362000 1438300 345090 1699600 1053700 958870 941790 2482800 2559900 1916100 1759800 2 2 0 2 2 2 2 2 2 2 2 83021000 0 83021000 22128 38 20351 115390;115391;115392;115393 139916;139917;139918;139919 139916 4 YLYHGNTNPELAFESAK Unmodified 1952.9268 0.92684164 2352 Q92621 NUP205 Nuclear pore complex protein Nup205 yes yes 0 0 0 0 By MS/MS By matching 6.33 1.11 2 1 2 1 4 2 54.507 54.802 3 3.2644E-06 15363 20211116_3434_TMUAki_TMT10x_P_F6 99.451 84.029 9375800 15546000 41773 16602000 14474000 19128000 12683000 12349000 11041000 11321000 11121000 8730100 14510000 887650 16900000 13836000 19178000 12908000 12867000 11307000 11100000 10725000 2 2 2 2 2 2 2 2 2 2 2 9375800 15546000 41773 16602000 14474000 19128000 12683000 12349000 11041000 11321000 11121000 8730100 14510000 887650 16900000 13836000 19178000 12908000 12867000 11307000 11100000 10725000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2791700000 1863800000 927920000 22129 2352 20352 115394;115395;115396;115397;115398;115399 139920;139921;139922 139921 3 YLYTLVITDK Unmodified 1227.6751 0.67509062 1401 P63173 RPL38 60S ribosomal protein L38 yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 3.09 4 4 4 6 6 75.915 75.94 2;3 1.036E-18 26598 20211116_3439_TMUAki_TMT10x_S_F1 243.03 192.22 111020000 171770000 1283700 187090000 90893000 105170000 107750000 61929000 58552000 69889000 107670000 103380000 160340000 9905900 188550000 87640000 111220000 106890000 65386000 63463000 67930000 102340000 12 12 9 12 12 12 12 12 12 12 12 50469000 74348000 741300 81722000 40946000 64662000 43769000 28260000 27139000 31804000 48078000 46997000 69402000 4664700 82594000 39372000 66108000 43735000 30676000 29080000 30916000 45731000 6 6 4 6 6 6 6 6 6 6 6 60550000 97423000 542430 105370000 49947000 40503000 63985000 33669000 31413000 38085000 59590000 56381000 90935000 5241300 105960000 48269000 45109000 63160000 34710000 34383000 37014000 56612000 6 6 5 6 6 6 6 6 6 6 6 10084000000 5792600000 4291300000 22130 1401 20353 115400;115401;115402;115403;115404;115405;115406;115407;115408;115409;115410;115411 139923;139924;139925;139926;139927;139928;139929;139930;139931;139932;139933;139934;139935 139930 13 YLYTLVITDKEK Unmodified 1484.8126 0.81264673 1401 P63173 RPL38 60S ribosomal protein L38 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.04 2 2 2 2 4 4 67.283 67.262 3 1.1627E-15 21090 20211116_3436_TMUAki_TMT10x_P_F8 194.24 168.12 65742000 127660000 1582300 76105000 112450000 199490000 112250000 143230000 122070000 129860000 109360000 61223000 118930000 7486100 83127000 107900000 194360000 114180000 148060000 123310000 127380000 105890000 9 9 7 9 9 9 9 9 9 9 9 50616000 97037000 1443800 57689000 89966000 175050000 93436000 111420000 94909000 101000000 82947000 47139000 90399000 6091600 63387000 86438000 169660000 94640000 116180000 96065000 99075000 80386000 6 6 5 6 6 6 6 6 6 6 6 15125000 30627000 138520 18416000 22480000 24441000 18817000 31810000 27164000 28857000 26417000 14084000 28533000 1394500 19740000 21465000 24693000 19537000 31882000 27243000 28305000 25507000 3 3 2 3 3 3 3 3 3 3 3 11479000000 7473200000 4005700000 22131 1401 20354 115412;115413;115414;115415;115416;115417;115418;115419 139936;139937;139938;139939;139940;139941;139942;139943;139944;139945 139940 10 YLYTLVITDKEKAEK Unmodified 1812.9873 0.98731663 1401 P63173 RPL38 60S ribosomal protein L38 yes yes 0 0 0 2 By MS/MS 8 0 1 1 64.701 64.872 4 3.7369E-05 20175 20211116_3436_TMUAki_TMT10x_P_F8 98.421 87.634 5595800 9741100 0 7351600 9762600 18085000 9360500 16118000 12062000 11129000 9977700 5210000 9080600 487730 7829100 9348500 17717000 9599400 16338000 12079000 11075000 9689700 1 1 0 1 1 1 1 1 1 1 1 5595800 9741100 0 7351600 9762600 18085000 9360500 16118000 12062000 11129000 9977700 5210000 9080600 487730 7829100 9348500 17717000 9599400 16338000 12079000 11075000 9689700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 777020000 777020000 0 22132 1401 20355 115420 139946 139946 1 YLYYTGR Unmodified 934.45487 0.45486751 203 O43242;O43242-2 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes no 0 0 0 0 By MS/MS 4.5 3.5 1 1 2 43.689 43.594 2 0.006572 13514 20211116_3439_TMUAki_TMT10x_S_F1 102.8 67.552 4767600 7453700 0 8961200 4659700 3517300 4187000 4897700 5428000 4532600 6465400 4438200 6960700 287080 8954000 4449100 3950000 4310200 4899100 5504500 4441800 6204800 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4767600 7453700 0 8961200 4659700 3517300 4187000 4897700 5428000 4532600 6465400 4438200 6960700 287080 8954000 4449100 3950000 4310200 4899100 5504500 4441800 6204800 2 2 0 2 2 2 2 2 2 2 2 88852000 0 88852000 22133 203 20356 115421;115422 139947;139948 139947 2 YMACCLLYR Oxidation (M) 1264.5403 0.54027017 1417;2044 P68363;P68363-2;P68366;P68366-2;A6NHL2;A6NHL2-2;Q71U36;Q71U36-2;Q9BQE3 TUBA1B;TUBA4A;TUBAL3;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-1C chain no no 0 0 1 0 By MS/MS By MS/MS 4.5 3.04 2 2 2 2 4 4 48.561 48.616 2 8.9048E-06 13397 20211116_3428_TMUAki_TMT10x_P_F1 164.1 107.05 22783000 43743000 151790 41252000 46448000 57810000 26254000 63415000 48562000 40100000 42411000 21214000 40808000 2231900 42507000 44030000 57997000 28377000 63495000 48209000 40124000 41102000 10 10 6 10 10 10 10 10 10 10 10 12951000 24658000 92706 22349000 35091000 49121000 20382000 36537000 27651000 22482000 23483000 12059000 23000000 1418800 23363000 33279000 48107000 21669000 37363000 27664000 22536000 22782000 5 5 3 5 5 5 5 5 5 5 5 9831900 19085000 59089 18903000 11357000 8689000 5871600 26877000 20911000 17618000 18928000 9154300 17807000 813100 19144000 10750000 9890500 6708200 26132000 20545000 17588000 18320000 5 5 3 5 5 5 5 5 5 5 5 9724000000 5883400000 3840600000 22134 1417;2044 20357 115423;115424;115425;115426;115427;115428;115429;115430 139949;139950;139951;139952;139953;139954;139955;139956;139957;139958 139949 1911 10 YMACCLLYR Unmodified 1248.5454 0.54535555 1417;2044 P68363;P68363-2;P68366;P68366-2;A6NHL2;A6NHL2-2;Q71U36;Q71U36-2;Q9BQE3 TUBA1B;TUBA4A;TUBAL3;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-1C chain no no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 56.425 56.156 2 4.1531E-06 19650 20211116_3441_TMUAki_TMT10x_S_F3 187.14 130.09 41679000 74283000 320070 73310000 61815000 47423000 34731000 38448000 27180000 33607000 50565000 38808000 69310000 3899200 74470000 58601000 49707000 36412000 39400000 28811000 33022000 48054000 8 8 6 8 8 8 8 8 8 8 8 12869000 21664000 86163 21675000 24246000 26945000 17654000 11067000 7729700 9577100 14613000 11983000 20215000 1229300 22190000 23082000 26768000 17945000 12009000 8542200 9414900 13884000 3 3 2 3 3 3 3 3 3 3 3 28809000 52619000 233910 51634000 37570000 20478000 17077000 27382000 19450000 24030000 35952000 26826000 49096000 2670000 52279000 35519000 22939000 18467000 27391000 20269000 23607000 34171000 5 5 4 5 5 5 5 5 5 5 5 3319300000 1723900000 1595500000 22135 1417;2044 20357 115431;115432;115433;115434 139959;139960;139961;139962;139963;139964;139965;139966 139964 8 YMACCLLYRGDVVPK Oxidation (M) 1859.8732 0.87323163 1417;2044 P68363;P68363-2;P68366;P68366-2;A6NHL2;A6NHL2-2;Q71U36;Q71U36-2;Q9BQE3 TUBA1B;TUBA4A;TUBAL3;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-1C chain no no 0 0 1 1 By MS/MS By MS/MS 4 3.29 2 1 2 2 3 54.411 54.323 3 8.819E-06 17863 20211116_3439_TMUAki_TMT10x_S_F1 101.2 90.736 28292000 47390000 211470 41678000 71872000 36066000 19887000 82917000 55894000 47695000 46908000 26343000 44198000 3015900 42838000 67611000 38141000 24005000 80885000 54968000 48033000 45529000 8 8 5 8 8 8 8 8 8 8 8 5654100 9292700 0 8175900 9013600 15041000 6645500 16547000 11540000 9158600 9281400 5263900 8666900 443930 8522300 8578400 14933000 7016100 16527000 11446000 9249100 9023400 1 1 0 1 1 1 1 1 1 1 1 22638000 38097000 211470 33503000 62859000 21025000 13241000 66370000 44354000 38536000 37627000 21079000 35531000 2571900 34316000 59033000 23208000 16989000 64359000 43522000 38783000 36506000 7 7 5 7 7 7 7 7 7 7 7 5096800000 2735300000 2361600000 22136 1417;2044 20358 115435;115436;115437;115438;115439 139967;139968;139969;139970;139971;139972;139973;139974 139969 1911 8 YMACCLLYRGDVVPK Unmodified 1843.8783 0.87831701 1417;2044 P68363;P68363-2;P68366;P68366-2;A6NHL2;A6NHL2-2;Q71U36;Q71U36-2;Q9BQE3 TUBA1B;TUBA4A;TUBAL3;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-1C chain no no 0 0 0 1 By MS/MS 2 0 1 1 60.053 59.821 3 0.0013399 18318 20211116_3440_TMUAki_TMT10x_S_F2 65.956 54.163 6621200 9397700 0 9302500 16611000 5498300 4782700 10816000 8912300 8114900 8902300 6163500 8768700 500280 9439900 15618000 5955500 5597600 10647000 8885700 8036700 8588100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6621200 9397700 0 9302500 16611000 5498300 4782700 10816000 8912300 8114900 8902300 6163500 8768700 500280 9439900 15618000 5955500 5597600 10647000 8885700 8036700 8588100 1 1 0 1 1 1 1 1 1 1 1 830060000 0 830060000 22137 1417;2044 20358 115440 139975 139975 1 YMEAFKPFLGIGLK Oxidation (M) 1628.8636 0.86363645 1739 Q14974;Q14974-2 KPNB1 Importin subunit beta-1 yes no 0 0 1 1 By MS/MS By MS/MS 4 0 2 1 1 75.563 75.534 3 0.0017862 24796 20211116_3431_TMUAki_TMT10x_P_F4 69.261 52.183 9535900 15564000 168260 15466000 8933400 13670000 11192000 8005700 9319300 9713000 11041000 8880100 14523000 938970 15758000 8632700 13910000 11176000 8476600 9623800 9415900 10598000 2 2 2 2 2 2 2 2 2 2 2 4678300 7609100 89686 7116400 4646300 8387900 5465600 3906800 4783600 4933900 5264100 4356700 7098300 471000 7313700 4481100 8365900 5480000 4229100 4913400 4776400 5063300 1 1 1 1 1 1 1 1 1 1 1 4857600 7955100 78573 8349300 4287100 5282500 5726400 4098900 4535700 4779100 5776900 4523500 7424400 467960 8443900 4151600 5544100 5696400 4247500 4710400 4639500 5534300 1 1 1 1 1 1 1 1 1 1 1 1023900000 485930000 537940000 22138 1739 20359 115441;115442 139976;139977 139976 2347 2 YMEVSGNLR Oxidation (M) 1083.5019 0.50189405 1572 Q12874 SF3A3 Splicing factor 3A subunit 3 yes yes 0 0 1 0 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 34.012 34.079 2 0.0061763 8130 20211116_3431_TMUAki_TMT10x_P_F4 79.893 50.743 1225700 1927200 0 1959000 2248200 2041000 1494100 1261100 1183300 1099400 1521100 1141100 1798400 102930 1997500 2135900 2056700 1545400 1316700 1229400 1080400 1456900 3 3 0 3 3 3 3 3 3 3 3 936040 1478300 0 1490400 2002900 1844600 1195200 1076700 1002100 902160 1205900 871460 1379500 82741 1524900 1899600 1840100 1248600 1128300 1035100 888290 1157000 1 1 0 1 1 1 1 1 1 1 1 289610 448900 0 468600 245290 196410 298970 184350 181220 197210 315230 269630 418940 20190 472590 236340 216600 296800 188430 194270 192070 299940 2 2 0 2 2 2 2 2 2 2 2 144690000 124830000 19857000 22139 1572 20360 115443;115444;115445;115446 139978;139979;139980 139978 2119 3 YMEVSGNLR Unmodified 1067.507 0.50697943 1572 Q12874 SF3A3 Splicing factor 3A subunit 3 yes yes 0 0 0 0 By MS/MS 4 0 1 1 40.737 40.947 2 3.1178E-05 11147 20211116_3442_TMUAki_TMT10x_S_F4 111.17 82.018 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22140 1572 20360 115447 139981 139981 1 YMFSRPFR Oxidation (M) 1118.5331 0.5331346 1052 P46778 RPL21 60S ribosomal protein L21 yes yes 0 0 1 1 By MS/MS By MS/MS 5.2 1.94 1 1 2 2 1 1 2 5 5 37.864 37.97 3 0.01598 12339 20211116_3441_TMUAki_TMT10x_S_F3 65.156 51.803 3437200 5822800 41540 5762400 7675200 8415100 4358500 5714300 5943500 4607100 5285000 3200700 5433100 379410 5922500 7278200 8348400 4643500 5913000 5953800 4545100 5118600 5 5 3 5 5 5 5 5 5 5 5 2434900 4138400 31988 3986800 6760800 7640200 3529200 4196200 4419000 3356600 3795200 2267300 3861000 292270 4132500 6403300 7480600 3776300 4415100 4434500 3312800 3680400 2 2 2 2 2 2 2 2 2 2 2 1002300 1684400 9551.5 1775600 914410 774880 829330 1518100 1524500 1250500 1489800 933330 1572100 87143 1790000 874980 867830 867190 1497900 1519300 1232300 1438200 3 3 1 3 3 3 3 3 3 3 3 972150000 864190000 107960000 22141 1052 20361 115448;115449;115450;115451;115452;115453;115454;115455;115456;115457 139982;139983;139984;139985;139986;139987 139984 1362 6 YMFSRPFR Unmodified 1102.5382 0.53821998 1052 P46778 RPL21 60S ribosomal protein L21 yes yes 0 0 0 1 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 43.263 43.546 3 0.0014559 11235 20211116_3445_TMUAki_TMT10x_S_F6 105.81 85.253 3374500 5687700 15438 6151800 3321200 2252700 2804400 3565600 3409100 3054500 4576800 3142100 5309000 293410 6184700 3172500 2564900 2890400 3543700 3483200 3004300 4379000 3 3 3 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3374500 5687700 15438 6151800 3321200 2252700 2804400 3565600 3409100 3054500 4576800 3142100 5309000 293410 6184700 3172500 2564900 2890400 3543700 3483200 3004300 4379000 3 3 3 3 3 3 3 3 3 3 3 172560000 0 172560000 22142 1052 20361 115458;115459;115460;115461;115462 139988;139989;139990;139991;139992 139991 5 YMFSRPFRK Oxidation (M) 1246.6281 0.62809762 1052 P46778 RPL21 60S ribosomal protein L21 yes yes 0 0 1 2 By MS/MS By MS/MS 6.33 1.49 1 1 1 1 2 5 1 35.924 36.133 4 0.035347 9059 20211116_3433_TMUAki_TMT10x_P_F5 51.113 36.447 13773000 20643000 919360 23828000 23275000 24760000 13787000 14041000 13917000 13155000 17171000 12831000 19274000 2131800 24098000 22134000 24926000 14485000 14791000 14268000 12884000 16464000 8 8 8 8 8 8 8 8 8 8 8 9425500 13936000 665900 16617000 19813000 20976000 9579700 10349000 10224000 9443600 12002000 8781000 13014000 1547500 16828000 18780000 20861000 10272000 11032000 10436000 9260500 11523000 6 6 6 6 6 6 6 6 6 6 6 4347300 6707100 253460 7210800 3462100 3784400 4207600 3692200 3692700 3711400 5169200 4049700 6260300 584240 7269400 3353700 4064600 4213000 3759200 3831600 3623900 4940800 2 2 2 2 2 2 2 2 2 2 2 1377700000 1337300000 40395000 22143 1052 20362 115463;115464;115465;115466;115467;115468 139993;139994 139994 1362 2 YMFSRPFRK Unmodified 1230.6332 0.633183 1052 P46778 RPL21 60S ribosomal protein L21 yes yes 0 0 0 2 By MS/MS By MS/MS 7 0.894 2 1 2 3 2 39.76 39.979 4 0.00070511 9548 20211116_3447_TMUAki_TMT10x_S_F8 109.44 85.35 8585000 12499000 69337 17300000 13705000 9618400 9192200 4580300 3250400 4641000 8957600 7993200 11681000 748500 17195000 13025000 10159000 9376100 4913000 3769200 4530100 8464400 6 6 3 6 6 6 6 6 6 6 6 5200100 7535900 44348 10370000 10825000 8047100 6983700 2777400 1942300 2793700 5281400 4841400 7042400 456880 10344000 10280000 8222700 7128600 3090300 2315000 2727800 4991400 3 3 2 3 3 3 3 3 3 3 3 3384900 4962800 24989 6930500 2879400 1571300 2208500 1802900 1308100 1847300 3676200 3151800 4638200 291620 6851100 2745200 1936500 2247400 1822700 1454200 1802300 3473000 3 3 1 3 3 3 3 3 3 3 3 1221700000 995770000 225980000 22144 1052 20362 115469;115470;115471;115472;115473 139995;139996;139997;139998;139999;140000 139999 6 YMHSGPVVAMVWEGLNVVK 2 Oxidation (M) 2147.0544 0.054367116 770;684 P15531;P15531-2;P22392-2 NME1;NME2 Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase B no no 0 0 2 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 67.844 67.708 3 6.2074E-05 21114 20211116_3428_TMUAki_TMT10x_P_F1 77.221 65.747 14829000 26148000 69630 20319000 15987000 28765000 18544000 17113000 17961000 21130000 19484000 13807000 24377000 1201900 21267000 15391000 28521000 18658000 18108000 18352000 20471000 18748000 6 6 2 6 6 6 6 6 6 6 6 6660800 11859000 10382 8596000 7494400 17634000 8739700 7396400 8036800 9463700 8232900 6201900 11054000 569110 9135000 7217600 17177000 8778200 8098700 8213700 9157600 7935900 2 2 1 2 2 2 2 2 2 2 2 8168500 14289000 59248 11723000 8492900 11131000 9804200 9716700 9924400 11666000 11251000 7605300 13323000 632780 12132000 8173200 11344000 9880000 10009000 10138000 11313000 10813000 4 4 1 4 4 4 4 4 4 4 4 2191800000 1248300000 943480000 22145 684;770 20363 115474;115475;115476;115477 140001;140002;140003;140004;140005;140006;140007 140001 772;773 7 YMHSGPVVAMVWEGLNVVK Oxidation (M) 2131.0595 0.059452494 770;684 P15531;P15531-2;P22392-2 NME1;NME2 Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase B no no 0 0 1 0 By MS/MS By MS/MS 2 0 3 2 1 77.591 77.541 3 3.1129E-07 23716 20211116_3440_TMUAki_TMT10x_S_F2 94.922 78.428 4135900 7325300 0 5565600 4865300 8097000 6052500 3134400 2935900 3597300 4546500 3850500 6828700 299850 5839900 4691400 7981000 5980800 3451100 3180300 3494200 4336000 1 1 0 1 1 1 1 1 1 1 1 4135900 7325300 0 5565600 4865300 8097000 6052500 3134400 2935900 3597300 4546500 3850500 6828700 299850 5839900 4691400 7981000 5980800 3451100 3180300 3494200 4336000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 713530000 713530000 0 22146 684;770 20363 115478;115479;115480 140008;140009;140010 140010 772;773 3 YMLLPNQVWDSIIQQATK Oxidation (M) 2163.1034 0.1034258 153 O14980 XPO1 Exportin-1 yes yes 0 0 1 0 By MS/MS By MS/MS 3 0.707 1 2 1 3 1 81.043 81.018 3 6.635E-06 28201 20211116_3429_TMUAki_TMT10x_P_F2 86.455 68.538 21192000 31599000 23112 34438000 18911000 23587000 25809000 13213000 14210000 18517000 21411000 19726000 29496000 1014900 34770000 18260000 24465000 25459000 14117000 15220000 17866000 20431000 3 3 1 3 3 3 3 3 3 3 3 6542600 9801800 23112 9928500 6357600 9865900 6704500 4375000 5001700 5624700 6746700 6090600 9146600 392220 10119000 6095100 9931200 6729800 4762700 5224800 5441900 6454300 2 2 1 2 2 2 2 2 2 2 2 14649000 21797000 0 24510000 12553000 13721000 19104000 8838500 9208600 12892000 14664000 13636000 20349000 622720 24651000 12164000 14534000 18730000 9354100 9994800 12424000 13977000 1 1 0 1 1 1 1 1 1 1 1 4148200000 2502300000 1645900000 22147 153 20364 115481;115482;115483;115484 140011;140012;140013 140011 120 3 YMLLPNQVWDSIIQQATK Unmodified 2147.1085 0.10851118 153 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 82.15 82.153 3 7.1748E-32 27959 20211116_3442_TMUAki_TMT10x_S_F4 195.6 175.04 4686700 6911200 86415 8230100 5047000 4303300 5466500 2360600 2606900 3059500 5449300 4364400 6453800 464520 8244200 4854500 4582500 5434500 2519000 2878100 2959300 5168700 4 4 3 4 4 4 4 4 4 4 4 1479200 2142700 37401 2552600 1487800 1559700 1738200 428360 520250 659560 1561000 1377600 2000900 157610 2560300 1435200 1624700 1712300 499540 619490 634640 1473600 1 1 1 1 1 1 1 1 1 1 1 3207500 4768500 49014 5677500 3559200 2743600 3728300 1932200 2086700 2400000 3888200 2986800 4452900 306900 5683900 3419300 2957800 3722100 2019500 2258600 2324700 3695100 3 3 2 3 3 3 3 3 3 3 3 651540000 304520000 347020000 22148 153 20364 115485;115486;115487 140014;140015;140016;140017 140015 4 YMMIVDPAISSSGPAGSYRPYDEGLRR 2 Oxidation (M) 3019.4168 0.4167908 604 P10253 GAA Lysosomal alpha-glucosidase;76 kDa lysosomal alpha-glucosidase;70 kDa lysosomal alpha-glucosidase yes yes 0 0 2 2 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 51.615 51.973 4 0.0011491 16705 20211116_3446_TMUAki_TMT10x_S_F7 59.943 30.769 3471100 6225100 26531 5187000 5420700 6963600 4016300 5780200 5740900 5162300 4800900 3232100 5804800 337250 5391500 5163800 6957900 4200700 5918100 5731600 5067300 4660400 2 2 1 2 2 2 2 2 2 2 2 1987600 3333200 26531 3086600 3825300 5651600 2731700 3719600 3793400 3076100 2830400 1850900 3109300 215250 3204600 3642000 5555800 2860900 3860000 3778500 3030800 2760200 1 1 1 1 1 1 1 1 1 1 1 1483500 2891900 0 2100400 1595400 1312000 1284600 2060600 1947600 2086200 1970500 1381200 2695500 122000 2186900 1521800 1402100 1339800 2058100 1953100 2036400 1900200 1 1 0 1 1 1 1 1 1 1 1 2753400000 1272800000 1480500000 22149 604 20365 115488;115489;115490 140018 140018 587;588 1 YMNSGPVVAMVWEGLNVVK Oxidation (M) 2108.0435 0.043468079 770 P22392-2;P22392;O60361 NME2;NME2P1 Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase yes no 0 0 1 0 By MS/MS By MS/MS 2 0 2 1 1 80.533 80.52 3 5.5819E-09 27957 20211116_3429_TMUAki_TMT10x_P_F2 117.29 104.53 8209700 13429000 0 12052000 9103200 10368000 11358000 4515600 3606900 4751200 8549200 7643500 12525000 633910 12367000 8781400 10535000 11163000 4893600 4184000 4630600 8094100 2 2 0 2 2 2 2 2 2 2 2 4790300 7995900 0 6564300 5311900 7307000 6836400 2175100 1584400 2225000 4733400 4460100 7455600 375050 6808900 5129700 7282800 6692200 2472000 1953400 2171000 4468700 1 1 0 1 1 1 1 1 1 1 1 3419300 5432900 0 5487400 3791200 3061300 4521800 2340500 2022500 2526200 3815700 3183500 5069700 258860 5557900 3651700 3252100 4471100 2421600 2230500 2459600 3625400 1 1 0 1 1 1 1 1 1 1 1 2422800000 1464600000 958200000 22150 770 20366 115491;115492 140019 140019 896 1 YMPQNPCIIATK Unmodified 1434.6999 0.69994194 1553 Q09028;Q09028-3;Q09028-2;Q09028-4 RBBP4 Histone-binding protein RBBP4 yes no 0 0 0 0 By MS/MS By MS/MS 4 3.46 4 3 4 3 55.487 55.4 2;3 1.7396E-16 16387 20211116_3436_TMUAki_TMT10x_P_F8 183.03 151.96 29066000 47545000 374610 57994000 42941000 40264000 32314000 25413000 23751000 24726000 36573000 27066000 44403000 2894500 58160000 40926000 41778000 33068000 26567000 24992000 24177000 34883000 8 8 4 8 8 8 8 8 8 8 8 15229000 24258000 270080 30315000 31581000 30294000 22193000 12534000 12458000 12718000 18516000 14181000 22658000 1696400 30498000 30059000 30464000 22701000 13646000 13315000 12413000 17674000 4 4 2 4 4 4 4 4 4 4 4 13837000 23287000 104520 27679000 11360000 9970200 10121000 12879000 11293000 12008000 18057000 12884000 21745000 1198100 27662000 10867000 11315000 10367000 12921000 11678000 11764000 17209000 4 4 2 4 4 4 4 4 4 4 4 2797500000 1578600000 1218900000 22151 1553 20367 115493;115494;115495;115496;115497;115498;115499 140020;140021;140022;140023;140024;140025;140026;140027;140028 140024 9 YMPQNPCIIATK Oxidation (M) 1450.6949 0.69485656 1553 Q09028;Q09028-3;Q09028-2;Q09028-4 RBBP4 Histone-binding protein RBBP4 yes no 0 0 1 0 By MS/MS By MS/MS 7.5 0.5 3 3 4 2 48.428 48.696 2;3 1.9485E-11 14785 20211116_3435_TMUAki_TMT10x_P_F7 130.63 113.86 27462000 45248000 312660 52768000 46215000 47100000 31050000 41438000 46906000 33728000 41793000 25571000 42250000 2711600 53217000 43943000 48205000 32779000 42187000 46843000 33259000 40474000 10 10 7 10 10 10 10 10 10 10 10 13772000 21349000 242970 24937000 33804000 34765000 18904000 18797000 21594000 16383000 19871000 12825000 19934000 1648800 25333000 32053000 34451000 20038000 19845000 21790000 16100000 19222000 5 5 5 5 5 5 5 5 5 5 5 13690000 23899000 69692 27832000 12412000 12335000 12146000 22642000 25311000 17346000 21921000 12746000 22315000 1062800 27884000 11891000 13754000 12742000 22342000 25053000 17159000 21252000 5 5 2 5 5 5 5 5 5 5 5 2907800000 1822500000 1085300000 22152 1553 20367 115500;115501;115502;115503;115504;115505 140029;140030;140031;140032;140033;140034;140035;140036;140037;140038;140039;140040 140031 2093 12 YMPQNPHIIATK Unmodified 1411.7282 0.7282056 1854 Q16576;Q16576-2 RBBP7 Histone-binding protein RBBP7 yes no 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 43.284 43.28 3 0.0013143 13359 20211116_3439_TMUAki_TMT10x_S_F1 73.881 56.641 10519000 16653000 80960 19181000 14290000 15813000 11956000 11894000 10939000 9687600 13561000 9795000 15548000 958050 19339000 13646000 16229000 12218000 12224000 11266000 9552300 13001000 3 3 2 3 3 3 3 3 3 3 3 6484300 10382000 61220 11889000 10734000 12739000 8547900 7291300 6619300 5790800 8184000 6038000 9693400 654170 12035000 10241000 12803000 8725100 7643300 6874000 5717400 7846400 1 1 1 1 1 1 1 1 1 1 1 4035200 6270300 19739 7292100 3556200 3073800 3408200 4602200 4320000 3896800 5377300 3756900 5854700 303870 7303900 3404500 3425900 3493100 4581000 4392500 3834900 5154500 2 2 1 2 2 2 2 2 2 2 2 193070000 92233000 100840000 22153 1854 20368 115506;115507;115508;115509 140041;140042;140043;140044 140043 4 YMQAVIQYGK Unmodified 1199.6009 0.60087982 1635 Q13451 FKBP5 Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed yes yes 0 0 0 0 By MS/MS 2 0 1 1 58.645 58.418 2 5.5631E-09 17755 20211116_3440_TMUAki_TMT10x_S_F2 150.28 77.938 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22154 1635 20369 115510 140045 140045 1 YMSVNQAAQQLLEIVQNQR Oxidation (M) 2248.127 0.12701479 2793 Q9H2P9;Q9H2P9-3;Q9H2P9-2;Q9H2P9-4;Q9H2P9-5;Q9H2P9-6 DPH5 Diphthine synthase yes no 0 0 1 0 By MS/MS By matching 3 0 3 2 1 79.577 79.515 3 4.0547E-05 28095 20211116_3430_TMUAki_TMT10x_P_F3 79.511 68.071 929670 1750400 0 1543100 934170 1608700 1250500 795050 710820 838140 1326800 865590 1632600 73854 1589800 903470 1616500 1235200 850700 768610 816800 1260800 1 1 0 1 1 1 1 1 1 1 1 929670 1750400 0 1543100 934170 1608700 1250500 795050 710820 838140 1326800 865590 1632600 73854 1589800 903470 1616500 1235200 850700 768610 816800 1260800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1500300000 489630000 1010700000 22155 2793 20370 115511;115512;115513 140046;140047 140047 2953 2 YMTDGMLLR 2 Oxidation (M) 1130.51 0.5100159 196;257;1715 O43143;O60231;Q14562 DHX15;DHX16;DHX8 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15;Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16;ATP-dependent RNA helicase DHX8 no no 0 0 2 0 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 39.184 39.268 2 0.040437 10879 20211116_3430_TMUAki_TMT10x_P_F3 49.57 35.052 4180100 6705200 53660 8084700 9417400 9347300 5284900 6830400 7577600 5343700 6752700 3892200 6261800 437200 8169200 8927100 9388000 5647800 7027200 7579400 5280200 6539600 5 5 4 5 5 5 5 5 5 5 5 2961400 4681300 37628 5635100 8257400 8337500 4286400 4951300 5588200 3814400 4785500 2757400 4371700 322040 5721800 7817900 8250900 4595800 5171000 5599600 3772100 4641300 3 3 2 3 3 3 3 3 3 3 3 1218700 2024000 16032 2449600 1160000 1009900 998550 1879200 1989400 1529400 1967200 1134800 1890200 115160 2447400 1109200 1137100 1052000 1856300 1979700 1508100 1898400 2 2 2 2 2 2 2 2 2 2 2 443010000 263200000 179810000 22156 196;257;1715 20371 115514;115515;115516;115517;115518 140048;140049;140050;140051 140048 155;156 4 YMVADKFTELQK Oxidation (M) 1487.733 0.7330162 869 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 1 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 54.933 55.391 3 0.014891 15864 20211116_3447_TMUAki_TMT10x_S_F8 62.14 43.776 21085000 33690000 569500 35250000 37230000 45925000 26702000 38536000 41057000 33393000 33115000 19637000 31442000 2505000 36010000 35468000 45961000 28080000 39400000 40858000 32825000 32191000 3 3 3 3 3 3 3 3 3 3 3 12641000 20092000 435160 20155000 29470000 37993000 19248000 23151000 24556000 19790000 19565000 11773000 18748000 1689300 20823000 28026000 37271000 20223000 24187000 24572000 19467000 19028000 2 2 2 2 2 2 2 2 2 2 2 8444600 13599000 134340 15095000 7760400 7932500 7454400 15385000 16501000 13603000 13550000 7863800 12694000 815730 15187000 7441500 8690400 7857400 15213000 16286000 13359000 13162000 1 1 1 1 1 1 1 1 1 1 1 2018000000 1630000000 388030000 22157 869 20372 115519;115520;115521;115522 140052;140053;140054 140054 1044 3 YMVADKFTELQK Unmodified 1471.7381 0.73810158 869 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 0 0 0 1 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 59.859 60.044 3 1.6537E-07 18189 20211116_3436_TMUAki_TMT10x_P_F8 132.97 103.03 15612000 24536000 52059 26429000 32441000 32736000 23642000 13538000 11469000 13674000 19770000 14537000 22902000 1578600 26923000 30887000 32529000 24064000 14737000 12495000 13349000 18814000 2 2 2 2 2 2 2 2 2 2 2 15612000 24536000 52059 26429000 32441000 32736000 23642000 13538000 11469000 13674000 19770000 14537000 22902000 1578600 26923000 30887000 32529000 24064000 14737000 12495000 13349000 18814000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 576670000 576670000 0 22158 869 20372 115523;115524;115525 140055;140056;140057;140058 140057 4 YNDYKLDFR Unmodified 1232.5826 0.58258722 2715 Q9BXP5;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3 SRRT Serrate RNA effector molecule homolog yes no 0 0 0 1 By MS/MS 7 0 1 1 47.552 48.035 3 0.081446 15050 20211116_3446_TMUAki_TMT10x_S_F7 39.625 19.244 1938700 3239300 17846 3698700 1223700 1378400 1686100 3830900 1015600 1810500 1964800 1805300 3024300 167350 3706100 1186000 1602400 1665400 3710800 1096200 1851500 1866000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1938700 3239300 17846 3698700 1223700 1378400 1686100 3830900 1015600 1810500 1964800 1805300 3024300 167350 3706100 1186000 1602400 1665400 3710800 1096200 1851500 1866000 1 1 1 1 1 1 1 1 1 1 1 115580000 0 115580000 22159 2715 20373 115526 140059 140059 1 YNEEERAQQEAEAAQR Unmodified 1920.8562 0.85619589 2570 Q99426;Q99426-2 TBCB Tubulin-folding cofactor B yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 32.411 32.427 3 3.7851E-93 6921 20211116_3428_TMUAki_TMT10x_P_F1 338.5 308.43 751510 1148300 10323 2120200 2634800 1902000 1030600 1688000 2139000 883690 1553200 699810 1075200 98302 2091000 2486600 1946300 1163600 1703000 2106800 896200 1516400 2 2 2 2 2 2 2 2 2 2 2 419160 597520 7198.2 1166200 2366700 1703000 781870 980790 1252400 505490 858190 390330 559680 68736 1157600 2229900 1685600 890510 1019400 1239500 513270 840070 1 1 1 1 1 1 1 1 1 1 1 332350 550810 3125 954000 268060 199030 248750 707250 886630 378200 694980 309480 515480 29566 933470 256730 260750 273070 683590 867280 382930 676360 1 1 1 1 1 1 1 1 1 1 1 535540000 361140000 174400000 22160 2570 20374 115527;115528;115529 140060;140061;140062 140060 3 YNEQHVPGSPFTAR Unmodified 1601.7587 0.7586541 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 4 2 2 1 2 2 4 3 33.335 33.387 3 9.6137E-05 8270 20211116_3444_TMUAki_TMT10x_S_F5 88.768 76.385 5753200 9046800 59886 10644000 11162000 10869000 6755700 7130800 7876600 6648900 8031100 5356900 8447600 557040 10749000 10592000 10974000 7117600 7424400 7969500 6513500 7742500 9 9 6 9 9 9 9 9 9 9 9 4189400 6369600 33098 7356400 9820400 9738300 5459200 5017500 5629300 4842600 5736700 3900600 5947200 405540 7470600 9305400 9667800 5770800 5334500 5723200 4736700 5530600 5 5 2 5 5 5 5 5 5 5 5 1563800 2677200 26788 3287600 1341200 1130400 1296500 2113300 2247300 1806300 2294400 1456300 2500400 151500 3278500 1286500 1306700 1346800 2089900 2246300 1776700 2211900 4 4 4 4 4 4 4 4 4 4 4 1848900000 1490200000 358690000 22161 755 20375 115530;115531;115532;115533;115534;115535;115536 140063;140064;140065;140066;140067;140068;140069;140070;140071 140070 9 YNFFTGCPK Unmodified 1132.5012 0.50116577 2609 Q99832;Q99832-3;Q99832-4;Q99832-2 CCT7 T-complex protein 1 subunit eta yes no 0 0 0 0 By MS/MS By MS/MS 2.73 1.81 2 4 4 1 6 5 58.605 58.347 2;3 6.0692E-06 19542 20211116_3439_TMUAki_TMT10x_S_F1 160.56 125.75 78372000 127780000 1238100 149920000 110700000 119650000 79381000 101770000 96540000 91648000 106080000 72979000 119310000 7798400 150930000 105410000 123350000 82689000 104070000 97801000 89925000 102040000 14 14 6 14 14 14 14 14 14 14 14 35421000 56297000 236770 65739000 73369000 85370000 49463000 46628000 45082000 41668000 47100000 32981000 52567000 3522100 66691000 69752000 84887000 51286000 49215000 46127000 40899000 45373000 6 6 2 6 6 6 6 6 6 6 6 42951000 71481000 1001300 84184000 37331000 34278000 29919000 55138000 51458000 49980000 58982000 39998000 66747000 4276300 84238000 35660000 38467000 31402000 54853000 51674000 49026000 56665000 8 8 4 8 8 8 8 8 8 8 8 13510000000 7666400000 5843600000 22162 2609 20376 115537;115538;115539;115540;115541;115542;115543;115544;115545;115546;115547 140072;140073;140074;140075;140076;140077;140078;140079;140080;140081;140082;140083;140084;140085;140086 140079 15 YNFPNPNPFVEDDMDKNEIASVAYR Oxidation (M) 2960.3287 0.3286873 185 O15371;O15371-2;O15371-3 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 0 0 1 1 By MS/MS 5 0 1 1 72.739 72.792 3 2.0246E-11 23919 20211116_3433_TMUAki_TMT10x_P_F5 107.25 100.88 4874000 8207000 28814 6495900 4961700 11768000 6138500 7738900 7148700 7409000 6405500 4538100 7651600 389380 6826600 4786000 11573000 6196300 8061800 7202000 7249600 6202200 3 3 1 3 3 3 3 3 3 3 3 4874000 8207000 28814 6495900 4961700 11768000 6138500 7738900 7148700 7409000 6405500 4538100 7651600 389380 6826600 4786000 11573000 6196300 8061800 7202000 7249600 6202200 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 832790000 832790000 0 22163 185 20377 115548 140087;140088;140089 140087 139 3 YNFPNPNPFVEDDMDKNEIASVAYR Unmodified 2944.3338 0.33377268 185 O15371;O15371-2;O15371-3 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 0 0 0 1 By MS/MS By MS/MS 5.57 0.728 4 2 1 2 5 76.388 76.396 3;4 1.4913E-22 25463 20211116_3433_TMUAki_TMT10x_P_F5 145.65 128.15 13686000 22021000 133960 21548000 16871000 14275000 16955000 8317500 7155100 9232700 15019000 12743000 20546000 1229400 21908000 16182000 14857000 16890000 8784700 7986900 8979400 14245000 6 6 3 6 6 6 6 6 6 6 6 4083800 6313400 7109.5 6261400 3971600 6001800 4816100 2548900 2168900 2642300 4293100 3802000 5890800 294440 6387500 3826600 6052700 4759100 2768600 2397700 2576800 4075600 2 2 1 2 2 2 2 2 2 2 2 9602200 15708000 126850 15287000 12900000 8272700 12139000 5768600 4986100 6590300 10726000 8941400 14655000 934970 15520000 12356000 8804100 12131000 6016100 5589200 6402600 10169000 4 4 2 4 4 4 4 4 4 4 4 2486300000 655680000 1830700000 22164 185 20377 115549;115550;115551;115552;115553;115554;115555 140090;140091;140092;140093;140094;140095 140090 6 YNFPVEVEVPMER Oxidation (M) 1623.7603 0.76029359 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 0 By MS/MS By MS/MS 4 0 2 1 1 63.548 63.527 2;3 0.038475 20420 20211116_3442_TMUAki_TMT10x_S_F4 40.983 30.349 9019900 14860000 68920 14313000 9620700 16016000 9695200 11560000 11554000 11390000 11040000 8398700 13864000 788820 14665000 9228800 16111000 9887900 11974000 11655000 11131000 10666000 3 3 1 3 3 3 3 3 3 3 3 6253500 9957200 68920 9382200 6309300 13469000 6948600 7930700 8652900 8618000 7400700 5822900 9288900 553540 9673100 6067900 13345000 7067600 8363500 8683900 8388500 7178000 2 2 1 2 2 2 2 2 2 2 2 2766400 4902500 0 4930400 3311500 2546800 2746600 3629700 2901200 2771600 3639200 2575800 4574700 235270 4992200 3160900 2765800 2820300 3610100 2970900 2742300 3487700 1 1 0 1 1 1 1 1 1 1 1 946750000 680680000 266070000 22165 1433 20378 115556;115557 140096;140097;140098 140098 1947 3 YNFPVEVEVPMER Unmodified 1607.7654 0.76537896 1433 P78527;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 70.087 70.033 2 3.8963E-24 22588 20211116_3431_TMUAki_TMT10x_P_F4 194.96 152.63 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22166 1433 20378 115558;115559 140099;140100 140099 2 YNGEPEHIER Unmodified 1242.5629 0.56291441 1732 Q14739 LBR Lamin-B receptor yes yes 0 0 0 0 By MS/MS 1.5 0.5 1 1 2 28.673 28.556 3 0.00081565 5427 20211116_3428_TMUAki_TMT10x_P_F1 82.171 61.842 250440 404140 5881.5 333020 312300 452140 306540 250190 270190 260030 310860 233220 376840 27111 346540 299660 448730 310120 264860 277910 253550 298620 2 2 2 2 2 2 2 2 2 2 2 250440 404140 5881.5 333020 312300 452140 306540 250190 270190 260030 310860 233220 376840 27111 346540 299660 448730 310120 264860 277910 253550 298620 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9257900 9257900 0 22167 1732 20379 115560;115561 140101;140102 140101 2 YNGLIHRK Unmodified 999.5614 0.56139826 1053 P46779;P46779-2;P46779-3;P46779-4;P46779-5 RPL28 60S ribosomal protein L28 yes no 0 0 0 1 By MS/MS By MS/MS 1.67 0.745 3 2 1 4 2 30.651 30.544 3;4 0.00076167 7742 20211116_3429_TMUAki_TMT10x_P_F2 116.88 96.364 1644900 2599300 27803 2512500 2184200 2507200 1846900 1311700 1418800 1321200 1969900 1531800 2425100 169620 2569200 2087500 2527600 1877700 1394300 1481700 1289900 1883200 6 6 5 6 6 6 6 6 6 6 6 1350000 2094100 25790 2035800 1855100 2252900 1519000 1065200 1164800 1094600 1613400 1257200 1953800 143030 2084200 1771900 2255000 1547400 1143800 1216400 1067800 1542500 4 4 4 4 4 4 4 4 4 4 4 294950 505220 2013.1 476660 329060 254300 327820 246520 254020 226600 356460 274640 471320 26592 484960 315590 272610 330300 250440 265290 222130 340690 2 2 1 2 2 2 2 2 2 2 2 92851000 71918000 20933000 22168 1053 20380 115562;115563;115564;115565;115566;115567 140103;140104;140105;140106;140107;140108 140104 6 YNGVFQECCQAEDK Unmodified 1746.6978 0.69776968 38 CON__P02769 yes yes 0 0 0 0 By MS/MS By MS/MS 3.56 1.07 2 2 3 2 6 3 47.451 47.455 2;3 2.0204E-35 13369 20211116_3431_TMUAki_TMT10x_P_F4 228.12 217.29 + 8006000 11006000 102330 15465000 18525000 13967000 10220000 15646000 20807000 12757000 14025000 7455000 10287000 890810 15440000 17559000 14359000 11128000 15736000 20464000 12578000 13740000 6 6 5 6 6 6 6 6 6 6 6 3973000 5602300 43590 7600500 16060000 11695000 8194800 7939700 10175000 6383100 6751900 3699500 5235000 523660 7673900 15203000 11577000 8784900 8215500 10144000 6298200 6619300 3 3 2 3 3 3 3 3 3 3 3 4033000 5403800 58740 7864900 2465100 2271900 2025100 7705800 10632000 6373600 7273500 3755600 5051500 367150 7766000 2356100 2781600 2343600 7520600 10320000 6279700 7120400 3 3 3 3 3 3 3 3 3 3 3 2191200000 1445600000 745540000 22169 38 20381 115568;115569;115570;115571;115572;115573;115574;115575;115576 140109;140110;140111;140112;140113;140114;140115;140116;140117 140113 9 YNGVFQECCQAEDKGACLLPK Unmodified 2486.1029 0.10285023 38 CON__P02769 yes yes 0 0 0 1 By MS/MS 6 0 1 1 61.624 61.615 4 0.011016 18587 20211116_3445_TMUAki_TMT10x_S_F6 47.392 34.838 + 1939600 3504000 0 3267700 3221600 2856500 2234900 5556700 4855200 5295700 3979700 1805900 3268700 168870 3344100 3063600 2996000 2399700 5505600 4793600 5182800 3866200 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1939600 3504000 0 3267700 3221600 2856500 2234900 5556700 4855200 5295700 3979700 1805900 3268700 168870 3344100 3063600 2996000 2399700 5505600 4793600 5182800 3866200 1 1 0 1 1 1 1 1 1 1 1 391750000 0 391750000 22170 38 20382 115577 140118 140118 1 YNHAACFGLQPGCLLPDGSR Unmodified 2232.0204 0.020441226 2732 Q9BYT8 NLN Neurolysin, mitochondrial yes yes 0 0 0 0 By MS/MS 8 0 1 1 57.635 57.8 3 1.5579E-05 17271 20211116_3436_TMUAki_TMT10x_P_F8 83.063 75.283 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22171 2732 20383 115578 140119 140119 1 YNIELDPR Unmodified 1018.5084 0.50835964 1419 P68400;Q8NEV1;P68400-2 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 46.665 46.726 2 0.025182 13078 20211116_3431_TMUAki_TMT10x_P_F4 67.032 19.183 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22172 1419 20384 115579;115580 140120;140121 140121 2 YNILGTNTIMDK Oxidation (M) 1397.6861 0.68606601 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 1 0 By MS/MS By MS/MS 6.33 0.667 1 4 4 5 4 57.155 57.484 2;3 5.5354E-06 16859 20211116_3445_TMUAki_TMT10x_S_F6 117.83 82.005 70844000 115860000 1681000 133730000 96433000 119810000 75121000 101690000 105190000 91838000 96337000 65973000 108180000 7446400 134960000 92008000 122510000 78244000 104010000 105380000 90099000 93207000 12 12 8 12 12 12 12 12 12 12 12 39131000 62050000 554780 69643000 69364000 94849000 50504000 54216000 54659000 48182000 50174000 36437000 57928000 3966600 70888000 66055000 94158000 52344000 56993000 55265000 47305000 48540000 7 7 5 7 7 7 7 7 7 7 7 31714000 53812000 1126200 64088000 27070000 24962000 24617000 47472000 50529000 43656000 46163000 29536000 50251000 3479800 64070000 25953000 28349000 25900000 47016000 50116000 42794000 44667000 5 5 3 5 5 5 5 5 5 5 5 13476000000 7889100000 5586700000 22173 1474 20385 115581;115582;115583;115584;115585;115586;115587;115588;115589 140122;140123;140124;140125;140126;140127;140128;140129;140130;140131;140132;140133 140131 1993 12 YNILGTNTIMDK Unmodified 1381.6912 0.69115139 1474 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 0 0 By MS/MS By MS/MS 7.27 0.75 2 4 5 6 5 65.759 66.006 2;3 5.8159E-15 20607 20211116_3436_TMUAki_TMT10x_P_F8 184.58 122.8 83199000 131980000 878890 166280000 92610000 77605000 79769000 42821000 37192000 51090000 85621000 77468000 123280000 7314600 165880000 88494000 83747000 80266000 45541000 41418000 49556000 81096000 14 14 9 14 14 14 14 14 14 14 14 36028000 56909000 438500 71304000 51808000 51437000 45095000 19960000 18235000 23881000 36836000 33547000 53156000 3404700 71428000 49520000 52919000 45262000 22000000 20386000 23162000 34958000 7 7 4 7 7 7 7 7 7 7 7 47171000 75074000 440390 94973000 40801000 26168000 34673000 22861000 18958000 27209000 48786000 43922000 70127000 3910000 94454000 38974000 30828000 35005000 23541000 21032000 26394000 46138000 7 7 5 7 7 7 7 7 7 7 7 9638900000 5487800000 4151100000 22174 1474 20385 115590;115591;115592;115593;115594;115595;115596;115597;115598;115599;115600 140134;140135;140136;140137;140138;140139;140140;140141;140142;140143;140144;140145;140146;140147;140148;140149 140140 16 YNIMLVR Oxidation (M) 923.48987 0.48987281 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 1 0 By MS/MS By MS/MS 5.33 3.09 2 2 2 3 3 45.612 45.762 2 0.057494 13744 20211116_3435_TMUAki_TMT10x_P_F7 74.717 52.789 25751000 40191000 134060 44535000 40351000 41369000 27229000 38549000 38388000 31454000 35967000 23975000 37519000 2145100 45079000 38348000 42276000 28651000 39123000 38479000 31012000 34771000 8 8 3 8 8 8 8 8 8 8 8 11983000 18504000 45201 20466000 27248000 29129000 15018000 17176000 17318000 14823000 16843000 11157000 17273000 1096900 20870000 25812000 28872000 15944000 17996000 17501000 14574000 16262000 4 4 1 4 4 4 4 4 4 4 4 13767000 21688000 88859 24069000 13104000 12240000 12211000 21373000 21070000 16631000 19124000 12818000 20246000 1048300 24209000 12536000 13404000 12707000 21128000 20978000 16438000 18509000 4 4 2 4 4 4 4 4 4 4 4 3680900000 2081600000 1599300000 22175 1146 20386 115601;115602;115603;115604;115605;115606 140150;140151;140152;140153;140154;140155 140151 1519 6 YNIMLVR Unmodified 907.49496 0.49495818 1146 P50990;P50990-2;P50990-3 CCT8 T-complex protein 1 subunit theta yes no 0 0 0 0 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 52.8 52.619 2 0.0019518 16653 20211116_3429_TMUAki_TMT10x_P_F2 153.88 107.12 34840000 50416000 0 64818000 54416000 50437000 40950000 19156000 16805000 22199000 36965000 32436000 47097000 2664700 64892000 51806000 51566000 41494000 21147000 18868000 21556000 35035000 5 5 0 5 5 5 5 5 5 5 5 30497000 43711000 0 56802000 50304000 47854000 37630000 16229000 14408000 19043000 32186000 28392000 40836000 2309400 56889000 47883000 48591000 38113000 18181000 16304000 18483000 30498000 4 4 0 4 4 4 4 4 4 4 4 4343300 6704700 0 8016100 4112300 2583100 3320800 2927700 2397500 3156200 4779300 4044100 6261100 355300 8003900 3923100 2974300 3381300 2966100 2563900 3073100 4536700 1 1 0 1 1 1 1 1 1 1 1 1883700000 1519200000 364520000 22176 1146 20386 115607;115608;115609;115610 140156;140157;140158;140159;140160 140158 5 YNKPAFLK Unmodified 979.5491 0.54910224 2890 Q9NPD8 UBE2T Ubiquitin-conjugating enzyme E2 T yes yes 0 0 0 1 By MS/MS 3 0 1 1 46.333 45.988 3 0.012731 15507 20211116_3441_TMUAki_TMT10x_S_F3 68.224 35.753 2733800 4257200 7782.6 5525900 2125200 1815100 2125600 2275200 2484600 1974900 3386700 2545500 3977200 225380 5492200 2038300 2088300 2167200 2281100 2544000 1941200 3239100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2733800 4257200 7782.6 5525900 2125200 1815100 2125600 2275200 2484600 1974900 3386700 2545500 3977200 225380 5492200 2038300 2088300 2167200 2281100 2544000 1941200 3239100 1 1 1 1 1 1 1 1 1 1 1 51039000 0 51039000 22177 2890 20387 115611 140161 140161 1 YNLGLDLR Unmodified 962.51853 0.5185304 463 P00367;P00367-3;P00367-2;P49448 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 0 0 0 0 By MS/MS 6 0 1 1 55.969 56.048 2 0.0019572 15923 20211116_3434_TMUAki_TMT10x_P_F6 116.37 39.089 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22178 463 20388 115612 140162 140162 1 YNLPESAPLIYNSFAQFLVK Unmodified 2313.2045 0.20452005 1944 Q5TFE4 NT5DC1 5'-nucleotidase domain-containing protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 82.081 82.084 3 1.2576E-24 27924 20211116_3442_TMUAki_TMT10x_S_F4 169.43 153.31 6188900 10345000 34818 9267400 7589800 9011900 8046900 6262800 5906700 6770200 7967200 5762400 9649400 534100 9526600 7289000 9134700 8072200 6521500 6175900 6591200 7621900 3 3 1 3 3 3 3 3 3 3 3 2556200 4452300 0 3599800 2646400 4918800 3084700 2775400 2544000 2790300 3269700 2379900 4151300 194430 3752300 2547300 4881400 3089300 2930500 2637500 2724500 3131700 1 1 0 1 1 1 1 1 1 1 1 3632600 5893200 34818 5667600 4943300 4093100 4962200 3487300 3362800 3979900 4697500 3382500 5498100 339670 5774300 4741700 4253300 4982900 3591000 3538400 3866700 4490200 2 2 1 2 2 2 2 2 2 2 2 1200900000 534820000 666060000 22179 1944 20389 115613;115614;115615 140163;140164;140165 140164 3 YNLSPSIFFCATPPDDGNLCR Unmodified 2443.0937 0.093665749 1473 Q00796 SORD Sorbitol dehydrogenase yes yes 0 0 0 0 By MS/MS By MS/MS 7.8 0.4 1 4 3 2 78.524 78.524 2;3 7.7779E-19 25815 20211116_3436_TMUAki_TMT10x_P_F8 144.88 139.89 26686000 42643000 1738100 43399000 29361000 39114000 33059000 26352000 23994000 28017000 33629000 24860000 39794000 3854400 44157000 28350000 39824000 33059000 27487000 25148000 27294000 32143000 4 4 3 4 4 4 4 4 4 4 4 15559000 25287000 680640 24560000 13600000 24954000 18441000 14882000 12821000 15569000 18790000 14492000 23593000 1881500 25112000 13202000 25171000 18278000 15659000 13501000 15177000 17942000 3 3 2 3 3 3 3 3 3 3 3 11127000 17357000 1057500 18839000 15761000 14160000 14618000 11470000 11172000 12448000 14839000 10368000 16201000 1972900 19045000 15147000 14653000 14781000 11827000 11647000 12117000 14201000 1 1 1 1 1 1 1 1 1 1 1 6712400000 4106300000 2606000000 22180 1473 20390 115616;115617;115618;115619;115620 140166;140167;140168 140167 3 YNNPAMLHNIDQEMLK 2 Oxidation (M) 1961.8975 0.89753212 3199 Q9UNS2;Q9UNS2-2 COPS3 COP9 signalosome complex subunit 3 yes no 0 0 2 0 By MS/MS By MS/MS 5.25 0.433 3 1 3 1 44.227 44.341 3 0.00080433 12374 20211116_3433_TMUAki_TMT10x_P_F5 66.965 34.578 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22181 3199 20391 115621;115622;115623;115624 140169;140170;140171;140172 140170 3189;3190 4 YNPENLATLER Unmodified 1318.6517 0.65172941 3084 Q9UBQ5;Q9UBQ5-2 EIF3K Eukaryotic translation initiation factor 3 subunit K yes no 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 50.694 50.652 2 3.1475E-14 15050 20211116_3442_TMUAki_TMT10x_S_F4 182.54 150.5 14648000 24867000 92644 29284000 23098000 28072000 17748000 17948000 19275000 17820000 20697000 13639000 23221000 1408700 29544000 22018000 28445000 18329000 18755000 19592000 17409000 19922000 5 5 3 5 5 5 5 5 5 5 5 9320200 15684000 92644 18712000 19361000 23578000 13893000 11910000 12531000 11945000 13151000 8678700 14646000 999670 18949000 18432000 23458000 14336000 12699000 12830000 11665000 12667000 3 3 3 3 3 3 3 3 3 3 3 5327800 9183600 0 10571000 3737700 4493900 3854300 6038000 6743300 5875000 7546000 4960600 8574500 408980 10596000 3586200 4987700 3992900 6056200 6762200 5744500 7254500 2 2 0 2 2 2 2 2 2 2 2 1641400000 926190000 715160000 22182 3084 20392 115625;115626;115627;115628 140173;140174;140175;140176;140177 140177 5 YNPNVLPVQCTGKR Unmodified 1644.8406 0.84060959 498 P05026;P05026-2 ATP1B1 Sodium/potassium-transporting ATPase subunit beta-1 yes no 0 0 0 1 By MS/MS 3 0 1 1 41.968 41.653 3 0.00038131 13713 20211116_3441_TMUAki_TMT10x_S_F3 69.258 46.022 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22183 498 20393 115629 140178 140178 1 YNPTWHCIVGR Unmodified 1401.6612 0.66118866 1399;2461 P63167;Q96FJ2 DYNLL1;DYNLL2 Dynein light chain 1, cytoplasmic;Dynein light chain 2, cytoplasmic no no 0 0 0 0 By MS/MS By MS/MS 3.85 2.32 2 3 2 1 2 1 2 6 7 43.444 43.425 2;3 2.4386E-08 11109 20211116_3445_TMUAki_TMT10x_S_F6 142.89 124.84 20744000 36749000 194080 40106000 37177000 35411000 27602000 28821000 27045000 26057000 31142000 19316000 34304000 1894900 40608000 35413000 36216000 28481000 29553000 27684000 25563000 29915000 16 16 9 16 16 16 16 16 16 16 16 9576600 17020000 167550 18543000 26044000 25735000 17892000 12321000 11770000 11914000 14105000 8917900 15887000 1168200 18917000 24776000 25472000 18385000 13192000 12325000 11652000 13534000 7 7 6 7 7 7 7 7 7 7 7 11168000 19729000 26531 21564000 11134000 9676400 9709600 16500000 15275000 14144000 17038000 10398000 18416000 726680 21691000 10637000 10744000 10096000 16361000 15359000 13911000 16381000 9 9 3 9 9 9 9 9 9 9 9 6522000000 4678500000 1843600000 22184 1399;2461 20394 115630;115631;115632;115633;115634;115635;115636;115637;115638;115639;115640;115641;115642 140179;140180;140181;140182;140183;140184;140185;140186;140187;140188;140189;140190;140191;140192;140193;140194 140192 16 YNPYTTRPNR Unmodified 1280.6262 0.62618337 3090 Q9UBU9;Q9UBU9-2 NXF1 Nuclear RNA export factor 1 yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 29.127 29.076 3 2.2796E-05 7199 20211116_3429_TMUAki_TMT10x_P_F2 133.89 113.1 646540 966520 6316.5 1102800 1107500 852180 758740 490580 576030 482890 788500 602010 902370 62719 1111700 1053300 875480 782210 516810 601550 471930 754060 3 3 2 3 3 3 3 3 3 3 3 362490 541310 1152.5 644290 825010 663150 436760 334650 424860 328710 462290 337500 505480 34379 650290 781160 667030 462960 356650 434080 321280 444800 2 2 1 2 2 2 2 2 2 2 2 284040 425210 5164.1 458530 282470 189030 321980 155930 151170 154180 326210 264510 396890 28340 461390 272150 208450 319240 160160 167470 150650 309260 1 1 1 1 1 1 1 1 1 1 1 35861000 24911000 10950000 22185 3090 20395 115643;115644;115645 140195;140196;140197 140196 3 YNQPFFVTSLPDDKIPK Unmodified 2008.0306 0.030578432 848 P29144 TPP2 Tripeptidyl-peptidase 2 yes yes 0 0 0 1 By MS/MS By MS/MS 5.2 3.43 2 3 2 3 70.113 70.028 3;4 1.8592E-11 21802 20211116_3447_TMUAki_TMT10x_S_F8 137.81 125.69 33354000 57610000 369720 50072000 39245000 46319000 39758000 37932000 37254000 40053000 42479000 31057000 53728000 3075900 51558000 37657000 47230000 40224000 39054000 38195000 39031000 40816000 7 7 4 7 7 7 7 7 7 7 7 7872600 13234000 68108 11206000 8292000 17149000 9651700 9285500 10057000 9798700 9674200 7330400 12341000 688300 11664000 7986900 16927000 9731600 9853000 10200000 9548700 9344200 2 2 1 2 2 2 2 2 2 2 2 25481000 44376000 301620 38866000 30953000 29170000 30107000 28647000 27197000 30255000 32805000 23727000 41387000 2387600 39894000 29670000 30303000 30493000 29200000 27995000 29482000 31472000 5 5 3 5 5 5 5 5 5 5 5 3586800000 1542500000 2044200000 22186 848 20396 115646;115647;115648;115649;115650 140198;140199;140200;140201;140202;140203;140204 140202 7 YNRDFESHITSYK Unmodified 1658.7689 0.76888444 2588 Q99613;Q99613-2;B5ME19 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 0 0 0 1 By MS/MS 6 0 1 1 39.375 39.392 4 0.038635 9220 20211116_3434_TMUAki_TMT10x_P_F6 46.704 32.285 1110100 1722900 0 2268800 3290900 2833800 1518800 1569900 1692700 1382900 1638800 1033300 1609700 89450 2284500 3108800 2823600 1638700 1654400 1712600 1358300 1582600 1 1 0 1 1 1 1 1 1 1 1 1110100 1722900 0 2268800 3290900 2833800 1518800 1569900 1692700 1382900 1638800 1033300 1609700 89450 2284500 3108800 2823600 1638700 1654400 1712600 1358300 1582600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50833000 50833000 0 22187 2588 20397 115651 140205 140205 1 YNSQLLSFVR Unmodified 1225.6455 0.64552182 480 P02786 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes yes 0 0 0 0 By MS/MS By MS/MS 2 0 2 1 1 63.523 63.255 2 0.0012521 21042 20211116_3429_TMUAki_TMT10x_P_F2 92.538 74.503 7063100 11739000 40563 11607000 8306400 10715000 8424600 7747700 7122900 7191900 8815900 6576300 10953000 586540 11837000 7966500 10904000 8499000 8010400 7363400 7046900 8451900 2 2 1 2 2 2 2 2 2 2 2 3742700 5747500 0 5627300 4428400 6881300 4416700 3725000 3303900 3646700 4362300 3484400 5362600 265650 5768000 4242400 6862000 4446200 3944300 3447400 3564800 4175400 1 1 0 1 1 1 1 1 1 1 1 3320400 5991200 40563 5979900 3878000 3833800 4008000 4022700 3819000 3545200 4453500 3091900 5590400 320890 6069200 3724100 4042300 4052800 4066200 3916000 3482100 4276500 1 1 1 1 1 1 1 1 1 1 1 598300000 406570000 191740000 22188 480 20398 115652;115653 140206;140207 140206 2 YNVGDLVWSK Unmodified 1179.5924 0.59242362 460 O96028;O96028-5;O96028-3;O96028-7;O96028-6 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 0 0 0 0 By MS/MS 7 0 1 1 68.241 68.729 2 0.086461 23018 20211116_3435_TMUAki_TMT10x_P_F7 57.174 16.145 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22189 460 20399 115654 140208 140208 1 YNVLGAETVLNQMR Oxidation (M) 1622.8086 0.80864076 1874 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 1 0 By MS/MS By MS/MS 6.57 0.495 3 4 4 3 58.518 59.029 2;3 1.4393E-06 17522 20211116_3445_TMUAki_TMT10x_S_F6 103.22 91.174 22093000 34703000 45438 35506000 29963000 40853000 25162000 33453000 31029000 30823000 28936000 20571000 32385000 1652600 36245000 28605000 41122000 25955000 34308000 31235000 30212000 27978000 6 6 1 6 6 6 6 6 6 6 6 14814000 23533000 45438 23224000 21870000 33568000 18671000 22640000 21350000 21611000 18881000 13793000 21958000 1085400 23869000 20888000 33313000 19189000 23540000 21515000 21149000 18290000 4 4 1 4 4 4 4 4 4 4 4 7279500 11170000 0 12282000 8093200 7285300 6490200 10813000 9678600 9212400 10055000 6777500 10427000 567190 12376000 7716800 7809200 6765800 10768000 9720100 9063200 9688100 2 2 0 2 2 2 2 2 2 2 2 4236600000 2804100000 1432500000 22190 1874 20400 115655;115656;115657;115658;115659;115660;115661 140209;140210;140211;140212;140213;140214;140215;140216 140214 2493 8 YNVLGAETVLNQMR Unmodified 1606.8137 0.81372614 1874 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 3 1 2 69.88 69.962 2;3 4.3649E-43 21727 20211116_3447_TMUAki_TMT10x_S_F8 250.48 203.22 2507400 4125700 10373 3388700 2982900 5213100 3985400 2111500 1596200 2170800 3104700 2334800 3846900 224210 3536400 2886000 5128500 3916200 2305100 1782000 2117700 2948300 1 1 1 1 1 1 1 1 1 1 1 2507400 4125700 10373 3388700 2982900 5213100 3985400 2111500 1596200 2170800 3104700 2334800 3846900 224210 3536400 2886000 5128500 3916200 2305100 1782000 2117700 2948300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 520650000 520650000 0 22191 1874 20400 115662;115663;115664 140217;140218;140219 140218 3 YNVPFLTFINKLDR Unmodified 1738.9406 0.94064121 2543 Q96RP9;Q96RP9-2 GFM1 Elongation factor G, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 6 0 2 1 1 79.043 79.031 3 0.00016454 25724 20211116_3445_TMUAki_TMT10x_S_F6 85.976 71.004 23605000 37882000 33444 34319000 24265000 29496000 26355000 17409000 16499000 19031000 23777000 21978000 35334000 1912000 35190000 23315000 30075000 26318000 18358000 17474000 18520000 22712000 3 3 1 3 3 3 3 3 3 3 3 15317000 23411000 33444 22757000 12833000 20766000 15092000 11140000 10612000 11788000 15388000 14261000 21843000 1190700 23232000 12359000 21061000 15052000 11831000 11161000 11486000 14696000 2 2 1 2 2 2 2 2 2 2 2 8288300 14470000 0 11562000 11432000 8730600 11262000 6268900 5886800 7242500 8389700 7717100 13491000 721230 11958000 10956000 9013500 11266000 6527100 6312800 7033300 8015800 1 1 0 1 1 1 1 1 1 1 1 1443000000 641370000 801620000 22192 2543 20401 115665;115666 140220;140221;140222 140222 3 YNVYGYTGQGVFSNVVR Unmodified 1921.9323 0.93226137 1641 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog yes yes 0 0 0 0 By MS/MS 3 0 1 1 66.909 66.619 3 0.011726 22904 20211116_3430_TMUAki_TMT10x_P_F3 46.65 33.883 2711700 4577700 35601 4563600 3625000 5733900 4049200 3178500 2888300 2939500 3739700 2525200 4271500 270790 4674100 3488700 5711700 4049200 3353500 3019400 2880700 3581200 1 1 1 1 1 1 1 1 1 1 1 2711700 4577700 35601 4563600 3625000 5733900 4049200 3178500 2888300 2939500 3739700 2525200 4271500 270790 4674100 3488700 5711700 4049200 3353500 3019400 2880700 3581200 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 389560000 389560000 0 22193 1641 20402 115667 140223 140223 1 YPASTVQILGAEK Unmodified 1375.7347 0.73473076 103 O00567 NOP56 Nucleolar protein 56 yes yes 0 0 0 0 By MS/MS By MS/MS 7 0 3 1 2 57.722 58.456 2;3 1.8671E-12 19277 20211116_3446_TMUAki_TMT10x_S_F7 137.4 116.53 1448600 2126100 10396 2603500 3075400 3742200 2018600 1913700 2112900 1859100 1953600 1348900 1985700 152570 2639300 2922900 3701000 2105800 2036300 2139700 1818000 1889500 1 1 1 1 1 1 1 1 1 1 1 1448600 2126100 10396 2603500 3075400 3742200 2018600 1913700 2112900 1859100 1953600 1348900 1985700 152570 2639300 2922900 3701000 2105800 2036300 2139700 1818000 1889500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 381760000 381760000 0 22194 103 20403 115668;115669;115670 140224;140225;140226 140225 3 YPDLSLVK Unmodified 933.51713 0.51713341 2246 Q8NEZ4;Q8NEZ4-3;Q8NEZ4-2 KMT2C Histone-lysine N-methyltransferase 2C yes no 0 0 0 0 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 50.351 50.514 3 0.058926 14023 20211116_3445_TMUAki_TMT10x_S_F6 40.045 6.2482 3416500 5115700 32003 4417100 1468000 3299300 2777100 2666500 2421500 2515300 3539300 3181300 4770900 285790 4538800 1442400 3415800 2737500 2738500 2518700 2462800 3379600 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3416500 5115700 32003 4417100 1468000 3299300 2777100 2666500 2421500 2515300 3539300 3181300 4770900 285790 4538800 1442400 3415800 2737500 2738500 2518700 2462800 3379600 1 1 1 1 1 1 1 1 1 1 1 228840000 0 228840000 22195 2246 20404 115671;115672;115673 140227;140228 140228 2 YPDPLIK Unmodified 844.46945 0.46945494 1362 P62701;Q8TD47 RPS4X;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2 yes no 0 0 0 0 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 53.133 53.286 2 0.044431 15160 20211116_3445_TMUAki_TMT10x_S_F6 72.138 33.302 27335000 41313000 119100 48800000 41052000 39901000 28552000 27209000 29261000 27480000 35053000 25452000 38577000 2479400 49122000 39050000 40912000 29637000 28313000 29942000 26827000 33635000 4 4 3 4 4 4 4 4 4 4 4 13997000 20874000 26845 24748000 30977000 29391000 17523000 13726000 14981000 14199000 18049000 13033000 19492000 1423300 25043000 29366000 29303000 18399000 14760000 15461000 13848000 17316000 2 2 2 2 2 2 2 2 2 2 2 13337000 20439000 92259 24052000 10075000 10510000 11029000 13484000 14279000 13281000 17004000 12418000 19086000 1056100 24079000 9684100 11609000 11238000 13553000 14481000 12979000 16319000 2 2 1 2 2 2 2 2 2 2 2 2060400000 1270300000 790160000 22196 1362 20405 115674;115675;115676;115677;115678 140229;140230;140231;140232 140232 4 YPDRVPVIVEK Unmodified 1313.7343 0.73433683 1274;408 P60520;O95166;Q9H0R8;Q9H0R8-2 GABARAPL2;GABARAP;GABARAPL1 Gamma-aminobutyric acid receptor-associated protein-like 2;Gamma-aminobutyric acid receptor-associated protein;Gamma-aminobutyric acid receptor-associated protein-like 1 no no 0 0 0 1 By MS/MS 6 0 1 1 48.403 48.559 3 0.0015685 13214 20211116_3445_TMUAki_TMT10x_S_F6 75.102 51.782 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22197 1274;408 20406 115679 140233 140233 1 YPDSHQLFVGNLPHDIDENELK Unmodified 2579.2292 0.22923125 3188 Q9UN86;Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.943 2 1 1 2 62.276 62.264 4 2.4006E-10 19434 20211116_3431_TMUAki_TMT10x_P_F4 105.96 97.872 20776000 31995000 235990 34239000 23840000 27233000 20277000 18343000 17010000 18813000 23317000 19345000 29863000 1855000 34666000 22775000 27976000 20653000 19113000 17672000 18354000 22298000 4 4 3 4 4 4 4 4 4 4 4 10728000 15449000 196410 17215000 13373000 17626000 10716000 9187500 9060800 9646000 11211000 9989900 14422000 1109500 17444000 12768000 17741000 10957000 9780800 9366500 9401900 10748000 2 2 2 2 2 2 2 2 2 2 2 10048000 16546000 39585 17023000 10467000 9606900 9561200 9155800 7949300 9166800 12107000 9355000 15441000 745470 17222000 10007000 10234000 9695800 9332100 8305200 8952300 11550000 2 2 1 2 2 2 2 2 2 2 2 1502900000 584030000 918830000 22198 3188 20407 115680;115681;115682 140234;140235;140236;140237 140235 4 YPEAPPFVR Unmodified 1074.5498 0.54983053 1627 Q13404;Q13404-7;Q13404-2;Q13404-1;Q13404-6 UBE2V1 Ubiquitin-conjugating enzyme E2 variant 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 1.12 2 2 2 2 4 4 50.426 50.682 2 1.8264E-05 14814 20211116_3433_TMUAki_TMT10x_P_F5 157.33 133.36 35170000 54788000 287280 61642000 52576000 59323000 37618000 45431000 44031000 42024000 46892000 32748000 51149000 3255400 62366000 50043000 60265000 39138000 46791000 44615000 41183000 45147000 9 9 6 9 9 9 9 9 9 9 9 18660000 28387000 101400 32239000 37143000 44946000 24686000 25301000 24258000 22983000 25205000 17375000 26502000 1896000 32807000 35307000 44562000 25678000 26646000 24731000 22542000 24285000 5 5 3 5 5 5 5 5 5 5 5 16510000 26401000 185880 29403000 15433000 14377000 12932000 20131000 19772000 19041000 21687000 15373000 24646000 1359400 29559000 14735000 15703000 13460000 20145000 19883000 18641000 20861000 4 4 3 4 4 4 4 4 4 4 4 5992000000 3065200000 2926700000 22199 1627 20408 115683;115684;115685;115686;115687;115688;115689;115690 140238;140239;140240;140241;140242;140243;140244;140245;140246 140240 9 YPEAPPSVR Unmodified 1014.5134 0.51344502 1833 Q15819 UBE2V2 Ubiquitin-conjugating enzyme E2 variant 2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 35.378 35.478 2 0.00022012 8621 20211116_3431_TMUAki_TMT10x_P_F4 133.86 106.61 1964000 2762400 5246.5 3761400 4965200 3921600 2127000 2320000 3382400 2191100 2775400 1828500 2581400 183460 3769000 4688100 3949200 2344700 2435700 3364600 2145300 2696100 2 2 1 2 2 2 2 2 2 2 2 1484100 2001600 0 2870900 4474800 3469800 1611200 1667900 2551600 1651300 1992200 1381700 1871000 138640 2876400 4217000 3457300 1813200 1786300 2534900 1613400 1939100 1 1 0 1 1 1 1 1 1 1 1 479900 760830 5246.5 890440 490340 451850 515770 652010 830770 539840 783220 446870 710420 44823 892690 471120 491860 531590 649460 829700 531860 757010 1 1 1 1 1 1 1 1 1 1 1 138700000 117750000 20955000 22200 1833 20409 115691;115692 140247;140248 140247 2 YPEAQSVASDILR Unmodified 1447.7307 0.73070802 2590 Q99615;Q99615-2 DNAJC7 DnaJ homolog subfamily C member 7 yes no 0 0 0 0 By MS/MS By MS/MS 4.25 0.433 3 1 2 2 60.26 60.148 2;3 6.9724E-09 19011 20211116_3442_TMUAki_TMT10x_S_F4 128.36 86.936 9467900 16643000 2514.9 17784000 10035000 7522700 8480100 8944200 8249700 9587800 11899000 8814800 15534000 695440 17909000 9576200 8328600 8675900 9041400 8532200 9337400 11365000 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9467900 16643000 2514.9 17784000 10035000 7522700 8480100 8944200 8249700 9587800 11899000 8814800 15534000 695440 17909000 9576200 8328600 8675900 9041400 8532200 9337400 11365000 3 3 1 3 3 3 3 3 3 3 3 921650000 0 921650000 22201 2590 20410 115693;115694;115695;115696 140249;140250;140251;140252;140253 140252 5 YPEDKITPENLPQILLQLK Unmodified 2251.2464 0.24638487 1026 P43243 MATR3 Matrin-3 yes yes 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 79.497 79.49 4 7.9274E-05 25594 20211116_3447_TMUAki_TMT10x_S_F8 78.021 64.594 8534800 15091000 32543 13853000 10193000 10977000 11831000 6640100 6269100 7766900 9706100 7946700 14076000 718130 14177000 9813500 11262000 11743000 7003700 6743100 7539100 9256700 3 3 2 3 3 3 3 3 3 3 3 2279700 4124900 0 3814100 2278800 3824300 2755100 1550800 1618500 1952700 2634500 2122300 3847900 145980 3913100 2194200 3844200 2734500 1703500 1732300 1890600 2509900 1 1 0 1 1 1 1 1 1 1 1 6255100 10966000 32543 10039000 7913800 7152500 9076200 5089300 4650600 5814200 7071600 5824400 10229000 572150 10264000 7619300 7418200 9008600 5300200 5010800 5648600 6746800 2 2 2 2 2 2 2 2 2 2 2 1724200000 900460000 823760000 22202 1026 20411 115697;115698 140254;140255;140256 140255 3 YPFESAEAQLLNK Unmodified 1508.7511 0.75110911 791 P23921 RRM1 Ribonucleoside-diphosphate reductase large subunit yes yes 0 0 0 0 By MS/MS By MS/MS 5.17 1.07 1 2 4 4 1 6 6 72.192 72.184 2;3 5.6296E-24 22587 20211116_3434_TMUAki_TMT10x_P_F6 191.04 160.48 55606000 96287000 800550 90172000 56179000 70561000 58577000 43544000 39818000 44788000 61250000 51781000 89823000 5344400 92129000 53974000 72486000 58711000 45673000 42090000 43691000 58422000 15 15 13 15 15 15 15 15 15 15 15 20010000 34154000 268750 32099000 19396000 34880000 22256000 17650000 15474000 17475000 22513000 18633000 31862000 1894600 32933000 18685000 34975000 22215000 18809000 16289000 17075000 21499000 6 6 5 6 6 6 6 6 6 6 6 35596000 62133000 531800 58073000 36783000 35681000 36322000 25894000 24344000 27312000 38738000 33147000 57961000 3449800 59196000 35289000 37511000 36496000 26864000 25801000 26616000 36923000 9 9 8 9 9 9 9 9 9 9 9 7749200000 3618400000 4130800000 22203 791 20412 115699;115700;115701;115702;115703;115704;115705;115706;115707;115708;115709;115710 140257;140258;140259;140260;140261;140262;140263;140264;140265;140266;140267;140268;140269;140270;140271;140272;140273;140274 140263 18 YPFILPHQQVDK Unmodified 1483.7823 0.78234966 3168 Q9ULC4;Q9ULC4-2;Q9ULC4-3 MCTS1 Malignant T-cell-amplified sequence 1 yes no 0 0 0 0 By MS/MS By MS/MS 5 3.29 2 1 2 3 2 54.994 54.933 3 6.3102E-12 15583 20211116_3447_TMUAki_TMT10x_S_F8 161.99 128.21 19350000 30569000 67718 38125000 19010000 23973000 18215000 20834000 20653000 20216000 23042000 18015000 28552000 1389800 38148000 18194000 25225000 18594000 21323000 20989000 19770000 22154000 5 5 2 5 5 5 5 5 5 5 5 6770200 10298000 67718 13157000 9444600 12953000 7810900 7293700 6935800 6921900 7348100 6304300 9619400 661870 13217000 9019000 13081000 7981300 7690200 7108900 6775700 7075700 2 2 2 2 2 2 2 2 2 2 2 12580000 20272000 0 24968000 9565400 11021000 10404000 13540000 13717000 13294000 15694000 11711000 18933000 727910 24931000 9175100 12144000 10612000 13632000 13880000 12994000 15079000 3 3 0 3 3 3 3 3 3 3 3 1251900000 747310000 504610000 22204 3168 20413 115711;115712;115713;115714;115715 140275;140276;140277;140278;140279;140280 140279 6 YPHLGQKPGGSDFLR Unmodified 1670.8529 0.85288884 1256 P56211;P56211-2 ARPP19 cAMP-regulated phosphoprotein 19 yes no 0 0 0 1 By MS/MS By MS/MS 3 2.92 2 1 1 1 3 44.022 43.966 4 0.00071234 11486 20211116_3428_TMUAki_TMT10x_P_F1 76.156 61.949 6692900 11395000 126450 11404000 11361000 13452000 8864000 7898800 7801400 7273100 8374700 6232400 10633000 703810 11664000 10836000 13453000 9088800 8292500 8003400 7129100 8061000 3 3 2 3 3 3 3 3 3 3 3 5529200 9314800 102680 9256600 10246000 12425000 7836300 6492200 6366400 5975300 6624100 5148700 8691500 585860 9494700 9767600 12329000 8029200 6884700 6550200 5857100 6382000 2 2 1 2 2 2 2 2 2 2 2 1163700 2080000 23772 2147900 1115400 1027100 1027700 1406600 1434900 1297800 1750600 1083700 1941200 117950 2169600 1068700 1124000 1059600 1407800 1453200 1272000 1679000 1 1 1 1 1 1 1 1 1 1 1 611740000 335810000 275930000 22205 1256 20414 115716;115717;115718;115719 140281;140282;140283 140281 3 YPHVEDYRR Unmodified 1233.5891 0.58906958 1307 P61289;P61289-2;P61289-3 PSME3 Proteasome activator complex subunit 3 yes no 0 0 0 1 By MS/MS 4.5 0.5 2 2 4 29.731 29.717 3;4 0.00073749 6224 20211116_3431_TMUAki_TMT10x_P_F4 99.855 83.561 997240 1641100 0 1579400 2038900 2045100 1318500 1093000 1194400 1000400 1323000 928400 1531100 80689 1622600 1935800 2033300 1371300 1156500 1225100 980830 1272300 4 4 0 4 4 4 4 4 4 4 4 997240 1641100 0 1579400 2038900 2045100 1318500 1093000 1194400 1000400 1323000 928400 1531100 80689 1622600 1935800 2033300 1371300 1156500 1225100 980830 1272300 4 4 0 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 108020000 108020000 0 22206 1307 20415 115720;115721;115722;115723 140284;140285;140286;140287 140285 4 YPIEHGIITNWDDMEK Oxidation (M) 1975.8986 0.89857798 1414 P68133;P68032;P62736;P63267 ACTA1;ACTC1;ACTA2;ACTG2 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle yes no 0 0 1 0 By MS/MS By MS/MS 4.19 1.47 2 6 11 12 14 10 2 28 29 57.209 57.23 2;3;4 1.5694E-07 19719 20211116_3441_TMUAki_TMT10x_S_F3 110.77 96.517 498370000 842490000 3101600 896890000 602360000 626420000 553330000 316030000 287450000 378700000 569110000 464020000 786330000 41211000 907090000 576240000 647870000 555600000 338860000 314060000 367280000 540280000 76 76 39 76 76 76 76 76 76 76 76 195910000 331850000 1545300 356180000 299280000 391830000 271250000 132540000 127030000 154750000 219890000 182410000 309740000 17450000 362170000 286240000 391140000 272150000 148510000 138840000 150220000 209250000 36 36 19 36 36 36 36 36 36 36 36 302450000 510640000 1556300 540720000 303080000 234590000 282080000 183490000 160420000 223950000 349210000 281600000 476590000 23761000 544920000 289990000 256720000 283460000 190350000 175220000 217060000 331030000 40 40 20 40 40 40 40 40 40 40 40 246100000000 97292000000 148810000000 22207 1414 20416 115724;115725;115726;115727;115728;115729;115730;115731;115732;115733;115734;115735;115736;115737;115738;115739;115740;115741;115742;115743;115744;115745;115746;115747;115748;115749;115750;115751;115752;115753;115754;115755;115756;115757;115758;115759;115760;115761;115762;115763;115764;115765;115766;115767;115768;115769;115770;115771;115772;115773;115774;115775;115776;115777;115778;115779;115780 140288;140289;140290;140291;140292;140293;140294;140295;140296;140297;140298;140299;140300;140301;140302;140303;140304;140305;140306;140307;140308;140309;140310;140311;140312;140313;140314;140315;140316;140317;140318;140319;140320;140321;140322;140323;140324;140325;140326;140327;140328;140329;140330;140331;140332;140333;140334;140335;140336;140337;140338;140339;140340;140341;140342;140343;140344;140345;140346;140347;140348;140349;140350;140351;140352;140353;140354;140355;140356;140357;140358;140359;140360;140361;140362;140363 140327 1899 76 YPIEHGIITNWDDMEK Unmodified 1959.9037 0.90366336 1414 P68133;P68032;P62736;P63267 ACTA1;ACTC1;ACTA2;ACTG2 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle yes no 0 0 0 0 By MS/MS By MS/MS 4.18 1.69 2 4 7 6 6 6 3 18 16 64.081 64.052 2;3;4 6.1794E-21 20066 20211116_3442_TMUAki_TMT10x_S_F4 168.02 153.78 885910000 1359900000 6664600 1647400000 950150000 710990000 1064200000 205100000 150370000 282660000 796000000 824830000 1270000000 69918000 1645800000 913230000 770640000 1045200000 236380000 215870000 272870000 747890000 54 54 26 53 53 53 54 54 54 54 54 519470000 776710000 4045900 950780000 606990000 517000000 710910000 122290000 88104000 164480000 457360000 483650000 725400000 41271000 950640000 584030000 544510000 696400000 145520000 129990000 158910000 429770000 29 29 15 28 28 28 29 29 29 29 29 366440000 583160000 2618700 696600000 343160000 193990000 353280000 82811000 62262000 118180000 338640000 341180000 544570000 28647000 695120000 329200000 226130000 348810000 90866000 85882000 113960000 318120000 25 25 11 25 25 25 25 25 25 25 25 183630000000 95647000000 87978000000 22208 1414 20416 115781;115782;115783;115784;115785;115786;115787;115788;115789;115790;115791;115792;115793;115794;115795;115796;115797;115798;115799;115800;115801;115802;115803;115804;115805;115806;115807;115808;115809;115810;115811;115812;115813;115814 140364;140365;140366;140367;140368;140369;140370;140371;140372;140373;140374;140375;140376;140377;140378;140379;140380;140381;140382;140383;140384;140385;140386;140387;140388;140389;140390;140391;140392;140393;140394;140395;140396;140397;140398;140399;140400;140401;140402;140403;140404;140405;140406;140407;140408;140409;140410;140411;140412;140413;140414;140415;140416;140417;140418 140408 55 YPIEHGIVTNWDDMEK Oxidation (M) 1961.8829 0.88292792 1276;1406 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 1 0 By MS/MS By MS/MS 4 0.756 2 3 2 5 2 56.034 56.039 3;4 0.00011974 17048 20211116_3433_TMUAki_TMT10x_P_F5 80.534 69.272 21705000 39800000 118690 38200000 29222000 34506000 25942000 18333000 17472000 20590000 26233000 20209000 37132000 1908400 39028000 27937000 35016000 26223000 19524000 18456000 20017000 25035000 7 7 4 7 7 7 7 7 7 7 7 12459000 21772000 107990 21717000 19096000 26482000 17056000 11113000 10639000 12076000 15009000 11601000 20315000 1119600 22230000 18259000 26338000 17209000 12104000 11260000 11754000 14343000 5 5 2 5 5 5 5 5 5 5 5 9245200 18028000 10696 16483000 10126000 8024100 8886200 7219800 6832600 8514700 11224000 8608300 16817000 788790 16798000 9678400 8678100 9014900 7420000 7196700 8262600 10692000 2 2 2 2 2 2 2 2 2 2 2 6119600000 2721300000 3398300000 22209 1276;1406 20417 115815;115816;115817;115818;115819;115820;115821 140419;140420;140421;140422;140423;140424;140425 140422 1726 7 YPIEHGIVTNWDDMEK Unmodified 1945.888 0.88801329 1276;1406 P60709;P63261 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 0 0 0 0 By MS/MS By MS/MS 5 0.816 2 2 2 3 3 62.389 62.424 3 2.3891E-21 18600 20211116_3444_TMUAki_TMT10x_S_F5 167.56 157.46 43441000 69201000 246780 80362000 44752000 38593000 49467000 17772000 16290000 19737000 40168000 40447000 64614000 3535300 80569000 43024000 41424000 48903000 19179000 18872000 19195000 38009000 8 8 4 8 8 8 8 8 8 8 8 22119000 34741000 148590 41717000 24368000 25395000 30002000 7818900 7045900 9048300 19672000 20595000 32443000 1816500 41821000 23503000 26482000 29427000 8873500 8620500 8786400 18586000 4 4 3 4 4 4 4 4 4 4 4 21322000 34460000 98185 38645000 20385000 13198000 19466000 9952900 9244500 10688000 20496000 19853000 32171000 1718800 38748000 19520000 14942000 19476000 10305000 10251000 10408000 19424000 4 4 1 4 4 4 4 4 4 4 4 9489700000 4526500000 4963200000 22210 1276;1406 20417 115822;115823;115824;115825;115826;115827 140426;140427;140428;140429;140430;140431;140432;140433 140431 8 YPLAVRPFYTMPDPR Oxidation (M) 1837.9185 0.91852556 678 P14868;P14868-2 DARS Aspartate--tRNA ligase, cytoplasmic yes no 0 0 1 1 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 55.752 55.46 3 0.00104 18273 20211116_3430_TMUAki_TMT10x_P_F3 71.548 53.091 8543200 13677000 62285 16164000 8892600 11615000 8755600 8829900 8797400 8551700 10333000 7955000 12771000 771230 16246000 8527000 12051000 8889700 9109900 9002500 8363500 9920700 4 4 4 4 4 4 4 4 4 4 4 4375000 6859000 33369 8148000 4834500 8281200 4793100 4378700 4332000 4246200 5274400 4073800 6405000 400260 8223300 4636600 8340400 4849700 4644900 4460700 4152500 5058900 2 2 2 2 2 2 2 2 2 2 2 4168100 6817800 28916 8016000 4058100 3334000 3962600 4451200 4465400 4305600 5059000 3881200 6366200 370970 8023000 3890400 3710300 4040000 4465000 4541900 4211100 4861800 2 2 2 2 2 2 2 2 2 2 2 1066800000 625590000 441180000 22211 678 20418 115828;115829;115830 140434;140435;140436;140437;140438 140435 760 5 YPLFEGQETGKK Unmodified 1395.7034 0.70343063 1001 P41250 GARS Glycine--tRNA ligase yes yes 0 0 0 1 By matching By MS/MS 7 0 2 1 1 47.423 47.962 3 0.00013032 15032 20211116_3446_TMUAki_TMT10x_S_F7 94.688 82.111 2951500 4454100 103970 7293000 1984700 2201200 2438200 5050800 6092300 4385600 5999100 2748900 4166800 328050 7163400 1920700 2620600 2562600 4971600 6034600 4310600 5790000 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2951500 4454100 103970 7293000 1984700 2201200 2438200 5050800 6092300 4385600 5999100 2748900 4166800 328050 7163400 1920700 2620600 2562600 4971600 6034600 4310600 5790000 1 1 1 1 1 1 1 1 1 1 1 486510000 317780000 168730000 22212 1001 20419 115831;115832 140439 140439 1 YPLFEGQETGKKETIEE Unmodified 1996.963 0.96295238 1001 P41250 GARS Glycine--tRNA ligase yes yes 0 0 0 2 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 54.855 54.969 3 3.9341E-07 16371 20211116_3431_TMUAki_TMT10x_P_F4 103.63 87.688 10682000 19565000 66807 20825000 28056000 36290000 19725000 30025000 30082000 23291000 21145000 9946100 18261000 1164000 21387000 26694000 35875000 20764000 30642000 29833000 23025000 20674000 4 4 2 4 4 4 4 4 4 4 4 8018300 14215000 66807 15204000 24818000 33574000 17965000 21664000 21605000 16901000 15135000 7466100 13268000 935960 15715000 23627000 32802000 18694000 22485000 21591000 16703000 14801000 3 3 2 3 3 3 3 3 3 3 3 2663500 5350300 0 5621500 3237600 2716100 1759600 8361700 8477300 6390300 6009300 2480000 4993400 228040 5672200 3067100 3073100 2070100 8157700 8242700 6322300 5873400 1 1 0 1 1 1 1 1 1 1 1 2812900000 1907200000 905730000 22213 1001 20420 115833;115834;115835;115836 140440;140441;140442;140443;140444 140440 5 YPMEHGIVK Oxidation (M) 1088.5325 0.5324659 1298 P61163 ACTR1A Alpha-centractin yes yes 0 0 1 0 By MS/MS 5.5 0.5 1 1 2 33.514 33.473 3 0.033625 6839 20211116_3434_TMUAki_TMT10x_P_F6 47.187 30.613 3484400 5237500 0 6070900 7419700 7084800 4385900 3523100 3617600 3759600 4796900 3244300 4890300 337690 6149600 7037700 7075000 4583700 3768900 3755800 3662000 4590900 2 2 0 2 2 2 2 2 2 2 2 3484400 5237500 0 6070900 7419700 7084800 4385900 3523100 3617600 3759600 4796900 3244300 4890300 337690 6149600 7037700 7075000 4583700 3768900 3755800 3662000 4590900 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 102100000 102100000 0 22214 1298 20421 115837;115838 140445;140446 140446 1752 2 YPMEHGIVK Unmodified 1072.5376 0.53755128 1298 P61163 ACTR1A Alpha-centractin yes yes 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 38.045 38.265 3 0.00029716 8766 20211116_3434_TMUAki_TMT10x_P_F6 111.65 94.216 360660 601300 0 639640 925080 705700 514870 318070 318860 304820 491530 335790 561220 35302 650820 876540 706130 537640 342560 339090 298250 468820 1 1 0 1 1 1 1 1 1 1 1 360660 601300 0 639640 925080 705700 514870 318070 318860 304820 491530 335790 561220 35302 650820 876540 706130 537640 342560 339090 298250 468820 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36577000 36577000 0 22215 1298 20421 115839;115840 140447 140447 1 YPNIELSYEVVDKDSIR Unmodified 2039.0211 0.021135958 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 1 By MS/MS 5 0 1 1 65.629 65.755 3 0.010259 21084 20211116_3433_TMUAki_TMT10x_P_F5 54.103 43.778 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22216 352 20422 115841 140448 140448 1 YPPPTELLDLQPLPVSALR Unmodified 2118.1725 0.17249164 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 By MS/MS By MS/MS 8 0 2 1 1 79.767 79.763 3 4.368E-18 25715 20211116_3447_TMUAki_TMT10x_S_F8 155.2 143.18 2750000 4400400 100060 4922200 2814400 3713500 3183300 2355400 2311500 2605300 3277000 2561200 4107900 322140 4966500 2713900 3827100 3182600 2470800 2423900 2534100 3131300 2 2 2 2 2 2 2 2 2 2 2 1632600 2550800 49362 2960200 1321100 2360600 1588600 1275900 1260900 1432700 1869000 1520400 2381700 176990 2982000 1276500 2417500 1587200 1356600 1318600 1392800 1784100 1 1 1 1 1 1 1 1 1 1 1 1117400 1849500 50694 1962000 1493200 1352900 1594700 1079500 1050600 1172600 1408000 1040800 1726200 145150 1984500 1437400 1409700 1595400 1114200 1105300 1141400 1347200 1 1 1 1 1 1 1 1 1 1 1 1038300000 494270000 543990000 22217 352 20423 115842;115843 140449;140450 140450 2 YPQLLPGIR Unmodified 1055.6128 0.61276513 786 P23526;P23526-2 AHCY Adenosylhomocysteinase yes no 0 0 0 0 By MS/MS By MS/MS 3.5 2.69 2 2 2 2 4 4 60.17 60.01 2 7.1902E-05 18403 20211116_3440_TMUAki_TMT10x_S_F2 143.61 109.52 155220000 253070000 938970 265550000 177690000 220450000 160970000 147500000 140390000 143160000 180470000 144530000 236190000 13628000 269350000 169980000 225720000 163520000 153520000 145140000 139990000 172850000 15 15 11 15 15 15 15 15 15 15 15 85824000 135960000 520220 142480000 105130000 162160000 104750000 80585000 75775000 77423000 96416000 79911000 126890000 7483500 145190000 100800000 162160000 105380000 85956000 79088000 75745000 92370000 8 8 5 8 8 8 8 8 8 8 8 69396000 117110000 418750 123070000 72558000 58288000 56219000 66912000 64613000 65736000 84057000 64618000 109300000 6144500 124160000 69184000 63569000 58140000 67561000 66055000 64249000 80485000 7 7 6 7 7 7 7 7 7 7 7 18386000000 10378000000 8008100000 22218 786 20424 115844;115845;115846;115847;115848;115849;115850;115851 140451;140452;140453;140454;140455;140456;140457;140458;140459;140460;140461;140462;140463;140464;140465 140462 15 YPSLELER Unmodified 1005.5131 0.51311067 1930 Q5SSJ5;Q5SSJ5-2;Q5SSJ5-3 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 0 By MS/MS 4 0 1 1 47.516 47.689 2 0.011948 13852 20211116_3442_TMUAki_TMT10x_S_F4 78.377 45.767 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22219 1930 20425 115852 140466 140466 1 YPSLSLHGIEGAFSGSGAK Unmodified 1876.9319 0.93192702 2511 Q96KP4;Q96KP4-2 CNDP2 Cytosolic non-specific dipeptidase yes no 0 0 0 0 By MS/MS By MS/MS 4.71 1.03 1 2 2 2 4 3 47.203 47.335 3 0.096205 12047 20211116_3444_TMUAki_TMT10x_S_F5 25.198 6.4094 28066000 45945000 360580 66126000 81968000 72879000 38359000 57045000 62361000 38500000 50643000 26132000 42947000 3026400 66135000 77495000 73472000 41933000 58243000 61976000 38365000 49216000 7 7 4 7 7 7 7 7 7 7 7 18370000 30560000 284020 43576000 75087000 66161000 32824000 37776000 40761000 24251000 32666000 17103000 28565000 2196400 43873000 70927000 65369000 35750000 39436000 40833000 24242000 31763000 4 4 2 4 4 4 4 4 4 4 4 9696000 15385000 76552 22550000 6880500 6718100 5535200 19268000 21600000 14249000 17976000 9028500 14383000 829980 22262000 6567800 8102500 6182300 18807000 21143000 14123000 17453000 3 3 2 3 3 3 3 3 3 3 3 4509800000 3436300000 1073500000 22220 2511 20426 115853;115854;115855;115856;115857;115858;115859 140467;140468 140468 2 YPSPFFVFGEK Unmodified 1316.6441 0.64412484 1546 Q08211;Q08211-2 DHX9 ATP-dependent RNA helicase A yes no 0 0 0 0 By MS/MS By MS/MS 3.04 1.52 4 14 23 6 2 2 18 33 47.938 47.885 2;3 1.4877E-08 25593 20211116_3428_TMUAki_TMT10x_P_F1 156.48 120.54 204150000 330100000 465510 324440000 193840000 302670000 212060000 180390000 174210000 204630000 236100000 190070000 308000000 14475000 331060000 186170000 306930000 212970000 190300000 181080000 198850000 225840000 42 42 20 42 42 42 42 42 42 42 42 103120000 161480000 238740 155060000 83380000 193670000 84958000 88311000 84293000 102850000 113520000 96009000 150650000 7746200 159220000 79954000 192550000 86074000 95541000 86819000 99853000 108600000 9 9 4 9 9 9 9 9 9 9 9 101030000 168620000 226760 169380000 110460000 109000000 127100000 92077000 89916000 101770000 122590000 94057000 157340000 6728400 171840000 106220000 114390000 126900000 94762000 94260000 98996000 117240000 33 33 16 33 33 33 33 33 33 33 33 37273000000 21383000000 15890000000 22221 1546 20427 115860;115861;115862;115863;115864;115865;115866;115867;115868;115869;115870;115871;115872;115873;115874;115875;115876;115877;115878;115879;115880;115881;115882;115883;115884;115885;115886;115887;115888;115889;115890;115891;115892;115893;115894;115895;115896;115897;115898;115899;115900;115901;115902;115903;115904;115905;115906;115907;115908;115909;115910 140469;140470;140471;140472;140473;140474;140475;140476;140477;140478;140479;140480;140481;140482;140483;140484;140485;140486;140487;140488;140489;140490;140491;140492;140493;140494;140495;140496;140497;140498;140499;140500;140501;140502;140503;140504;140505;140506;140507;140508;140509;140510;140511;140512;140513;140514;140515;140516;140517;140518;140519;140520;140521 140469 53 YPVNSVNILK Unmodified 1145.6445 0.64445919 712 P17987 TCP1 T-complex protein 1 subunit alpha yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.04 2 2 2 2 4 4 57.988 58.064 2 7.5402E-14 16835 20211116_3447_TMUAki_TMT10x_S_F8 220.39 133.21 52569000 85298000 180920 98174000 76145000 80159000 55998000 71907000 77567000 66665000 75993000 48944000 79640000 4273000 98975000 72478000 82586000 58523000 73369000 77911000 65324000 73356000 11 11 3 11 11 11 11 11 11 11 11 22342000 35739000 1716.2 41132000 50740000 56183000 32634000 29806000 33144000 28705000 31432000 20799000 33369000 1912700 41806000 48175000 55714000 34064000 31603000 33635000 28080000 30374000 5 5 1 5 5 5 5 5 5 5 5 30227000 49558000 179200 57042000 25405000 23976000 23365000 42101000 44423000 37959000 44561000 28144000 46271000 2360300 57169000 24303000 26872000 24458000 41767000 44276000 37244000 42982000 6 6 2 6 6 6 6 6 6 6 6 9269000000 6054100000 3214900000 22222 712 20428 115911;115912;115913;115914;115915;115916;115917;115918 140522;140523;140524;140525;140526;140527;140528;140529;140530;140531;140532 140532 11 YQAEIPDRLVEGESDNR Unmodified 1989.9392 0.93919724 384 O94776 MTA2 Metastasis-associated protein MTA2 yes yes 0 0 0 1 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 46.602 46.457 3 5.0004E-12 14216 20211116_3429_TMUAki_TMT10x_P_F2 140.16 125.47 1652100 3110300 22889 3305200 4243000 4935100 2689000 2921300 2811000 2307400 2776700 1538400 2903000 194590 3382500 4030700 4881800 2812600 3053400 2853100 2278800 2679600 2 2 2 2 2 2 2 2 2 2 2 1652100 3110300 22889 3305200 4243000 4935100 2689000 2921300 2811000 2307400 2776700 1538400 2903000 194590 3382500 4030700 4881800 2812600 3053400 2853100 2278800 2679600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 241690000 241690000 0 22223 384 20429 115919;115920;115921 140533;140534;140535 140534 3 YQAEIPDRLVEGESDNRNQQK Unmodified 2488.1942 0.19424273 384 O94776 MTA2 Metastasis-associated protein MTA2 yes yes 0 0 0 2 By MS/MS By MS/MS 3.6 1.02 1 1 2 1 1 4 42.206 42.234 4 1.534E-82 13932 20211116_3441_TMUAki_TMT10x_S_F3 280.2 252.46 12077000 19261000 202920 27061000 21566000 20789000 13012000 18046000 18716000 14978000 17730000 11246000 18002000 1270400 26962000 20473000 21504000 13822000 18394000 18756000 14755000 17134000 10 10 8 10 10 10 10 10 10 10 10 5994500 9359600 129350 13732000 17356000 16859000 9903200 9344000 9531600 7411300 8800500 5582100 8749900 732230 13747000 16459000 16813000 10423000 9821700 9687100 7317900 8512200 3 3 2 3 3 3 3 3 3 3 3 6083000 9901700 73569 13328000 4210300 3929800 3108400 8701800 9184500 7566800 8929500 5664300 9252200 538190 13215000 4013200 4690400 3398700 8572600 9068700 7436900 8621900 7 7 6 7 7 7 7 7 7 7 7 1359700000 625950000 733770000 22224 384 20430 115922;115923;115924;115925;115926 140536;140537;140538;140539;140540;140541;140542;140543;140544;140545 140541 10 YQAVTATLEEK Unmodified 1251.6347 0.63468237 983 P40429;Q6NVV1 RPL13A;RPL13AP3 60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3 yes no 0 0 0 0 By MS/MS By MS/MS 4.77 1.05 2 3 4 4 8 5 53.977 54.065 2;3 1.4147E-47 15245 20211116_3444_TMUAki_TMT10x_S_F5 302.2 219.74 70791000 106680000 241130 114990000 103670000 99239000 72795000 70554000 67491000 64155000 84396000 65910000 99572000 5813400 116480000 98597000 101420000 75290000 72990000 69492000 62921000 80890000 14 14 5 14 14 14 14 14 14 14 14 41777000 62002000 108910 66647000 72348000 76711000 45337000 41293000 39578000 37632000 48743000 38895000 57871000 3557400 67813000 68670000 76732000 47222000 43662000 40841000 36905000 46737000 8 8 2 8 8 8 8 8 8 8 8 29015000 44676000 132220 48339000 31326000 22528000 27458000 29260000 27913000 26522000 35653000 27014000 41701000 2256100 48669000 29928000 24693000 28068000 29328000 28651000 26016000 34153000 6 6 3 6 6 6 6 6 6 6 6 10327000000 6158400000 4168300000 22225 983 20431 115927;115928;115929;115930;115931;115932;115933;115934;115935;115936;115937;115938;115939 140546;140547;140548;140549;140550;140551;140552;140553;140554;140555;140556;140557;140558;140559 140557 14 YQDILVFR Unmodified 1052.5655 0.56548059 735 P19623 SRM Spermidine synthase yes yes 0 0 0 0 By MS/MS By MS/MS 7 0.707 1 2 1 2 2 64.645 64.985 2 0.0012715 21400 20211116_3435_TMUAki_TMT10x_P_F7 124.98 87.425 20798000 32714000 61644 32542000 24791000 28715000 22630000 23154000 20379000 22965000 26080000 19364000 30525000 1701400 33153000 23711000 29364000 22998000 23816000 21033000 22436000 24982000 3 3 1 3 3 3 3 3 3 3 3 8348100 12290000 0 12744000 10053000 15770000 9847400 8918400 7546900 8279300 9828500 7772500 11470000 670960 13015000 9631000 15725000 9928200 9394300 7859400 8112300 9410500 1 1 0 1 1 1 1 1 1 1 1 12449000 20424000 61644 19798000 14738000 12945000 12782000 14236000 12832000 14686000 16252000 11591000 19055000 1030500 20139000 14080000 13639000 13069000 14422000 13174000 14324000 15572000 2 2 1 2 2 2 2 2 2 2 2 1546000000 589950000 956040000 22226 735 20432 115940;115941;115942;115943 140560;140561;140562;140563 140561 4 YQEALHLGSQLLR Unmodified 1526.8205 0.82052608 73 O00231;O00231-2 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 61.103 60.96 3 2.1915E-15 18454 20211116_3428_TMUAki_TMT10x_P_F1 176.56 142.51 3011900 4958500 0 5373100 3682600 4480600 3458800 2936500 2933100 3186700 3808400 2804000 4628300 216010 5438800 3522600 4584900 3503800 3071100 3038000 3102000 3646800 2 2 0 2 2 2 2 2 2 2 2 1517100 2346400 0 2524900 1915200 2995200 1835600 1466200 1501800 1555000 1787600 1412400 2190100 118640 2570300 1833600 2987900 1855800 1570600 1552600 1515100 1715600 1 1 0 1 1 1 1 1 1 1 1 1494800 2612100 0 2848200 1767400 1485400 1623200 1470300 1431300 1631600 2020800 1391600 2438200 97366 2868500 1689000 1597000 1648000 1500500 1485400 1586900 1931200 1 1 0 1 1 1 1 1 1 1 1 928210000 413410000 514800000 22227 73 20433 115944;115945 140564;140565 140564 2 YQEEFEHFQQELDK Unmodified 1868.8217 0.82170787 1090 P49257 LMAN1 Protein ERGIC-53 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 3 1 2 64.614 64.488 3 0.00020624 21972 20211116_3439_TMUAki_TMT10x_S_F1 76.85 64.685 5606900 7836900 0 9298000 6264600 10222000 6030400 5094800 4893100 5690900 6132800 5220500 7318100 466830 9396100 6000400 10241000 6094000 5456600 5071600 5533500 5877700 1 1 0 1 1 1 1 1 1 1 1 5606900 7836900 0 9298000 6264600 10222000 6030400 5094800 4893100 5690900 6132800 5220500 7318100 466830 9396100 6000400 10241000 6094000 5456600 5071600 5533500 5877700 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1425000000 772170000 652790000 22228 1090 20434 115946;115947;115948 140566;140567 140567 2 YQEVTNNLEFAK Unmodified 1454.7042 0.70415892 1709 Q14444;Q14444-2 CAPRIN1 Caprin-1 yes no 0 0 0 0 By MS/MS By MS/MS 5.11 0.737 2 4 3 5 4 57.965 58.068 2;3 3.3618E-24 16847 20211116_3444_TMUAki_TMT10x_S_F5 250.26 191.28 31992000 51614000 555930 59424000 38463000 40579000 29471000 38168000 37968000 34829000 41865000 29791000 48191000 3211500 59789000 36685000 42447000 30627000 38829000 38392000 34154000 40265000 8 8 7 8 8 8 8 8 8 8 8 10432000 16931000 193240 18339000 19868000 23951000 13313000 12444000 12535000 11780000 13189000 9714700 15804000 1177100 18693000 18897000 23795000 13823000 13213000 12809000 11533000 12703000 3 3 3 3 3 3 3 3 3 3 3 21560000 34683000 362690 41085000 18595000 16628000 16158000 25724000 25433000 23049000 28677000 20076000 32387000 2034400 41096000 17787000 18652000 16804000 25616000 25583000 22621000 27563000 5 5 4 5 5 5 5 5 5 5 5 3091300000 1489900000 1601500000 22229 1709 20435 115949;115950;115951;115952;115953;115954;115955;115956;115957 140568;140569;140570;140571;140572;140573;140574;140575;140576 140574 9 YQFDAFYGER Unmodified 1294.5619 0.56185177 1734 Q14807;Q14807-2 KIF22 Kinesin-like protein KIF22 yes no 0 0 0 0 By MS/MS 4 0 1 1 58.368 58.274 2 0.096884 18248 20211116_3442_TMUAki_TMT10x_S_F4 55.806 39.266 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22230 1734 20436 115958 140577 140577 1 YQFVREPEDEEEEEEEEEEDEDEDLEELEVLER Unmodified 4185.7193 0.71933819 2903 Q9NQC3;Q9NQC3-2;Q9NQC3-5;Q9NQC3-4 RTN4 Reticulon-4 yes no 0 0 0 1 By matching By MS/MS 1 0 2 1 1 77.77 77.744 3 7.0405E-16 27357 20211116_3439_TMUAki_TMT10x_S_F1 114.76 110.09 543650 935330 8286 882630 714280 639660 733350 347740 361620 529100 581950 506250 872570 55184 900520 685860 660070 731360 373720 391970 509270 554560 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 543650 935330 8286 882630 714280 639660 733350 347740 361620 529100 581950 506250 872570 55184 900520 685860 660070 731360 373720 391970 509270 554560 1 1 1 1 1 1 1 1 1 1 1 3208800000 1666000000 1542900000 22231 2903 20437 115959;115960 140578 140578 1 YQGDGIVEDEEETMENNEEKK Oxidation (M) 2501.0388 0.038772449 3018 Q9NYF8;Q9NYF8-2;Q9NYF8-4;Q9NYF8-3 BCLAF1 Bcl-2-associated transcription factor 1 yes no 0 0 1 1 By MS/MS By matching 1 0 2 1 1 44.61 44.504 4 4.4538E-05 11813 20211116_3428_TMUAki_TMT10x_P_F1 74.047 66.244 3030200 4560300 0 6624400 10307000 9349100 5428800 4265500 5642100 3339100 4688600 2821000 4263000 301290 6652900 9756400 9241900 5768300 4565700 5696700 3299300 4552500 2 2 0 2 2 2 2 2 2 2 2 3030200 4560300 0 6624400 10307000 9349100 5428800 4265500 5642100 3339100 4688600 2821000 4263000 301290 6652900 9756400 9241900 5768300 4565700 5696700 3299300 4552500 2 2 0 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 273540000 214490000 59048000 22232 3018 20438 115961;115962 140579;140580 140580 3074 2 YQGDGIVEDEEETMENNEEKK Unmodified 2485.0439 0.043857827 3018 Q9NYF8;Q9NYF8-2;Q9NYF8-4;Q9NYF8-3 BCLAF1 Bcl-2-associated transcription factor 1 yes no 0 0 0 1 By MS/MS 1 0 1 1 54.219 53.923 4 1.5316E-06 17732 20211116_3439_TMUAki_TMT10x_S_F1 82.477 74.855 2051000 3558000 5754.6 4506800 1537700 1291400 1265400 1655400 1549000 1509900 2531300 1909700 3323600 168210 4482600 1468000 1522100 1306600 1660300 1598300 1480600 2411400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2051000 3558000 5754.6 4506800 1537700 1291400 1265400 1655400 1549000 1509900 2531300 1909700 3323600 168210 4482600 1468000 1522100 1306600 1660300 1598300 1480600 2411400 1 1 1 1 1 1 1 1 1 1 1 152760000 0 152760000 22233 3018 20438 115963 140581 140581 1 YQGVNLYVK Unmodified 1082.576 0.57604528 634 P11940;P11940-2;Q4VXU2;Q4VXU2-2 PABPC1;PABPC1L Polyadenylate-binding protein 1;Polyadenylate-binding protein 1-like yes no 0 0 0 0 By MS/MS 8 0 1 1 53.119 53.222 2 0.0384 15431 20211116_3436_TMUAki_TMT10x_P_F8 63.961 31.829 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22234 634 20439 115964 140582 140582 1 YQHLITNSFVECNR Unmodified 1779.8363 0.8362525 3306 Q9Y4X5 ARIH1 E3 ubiquitin-protein ligase ARIH1 yes yes 0 0 0 0 By MS/MS By matching 8 0 2 1 1 46.96 46.98 3 0.00036588 12916 20211116_3436_TMUAki_TMT10x_P_F8 79.614 69.417 1788400 2912200 0 2866000 3336900 4628300 2912100 3100500 2864300 2582100 2984200 1665100 2717300 160920 2953400 3188400 4572000 2974600 3213900 2920300 2543200 2875100 1 1 0 1 1 1 1 1 1 1 1 1788400 2912200 0 2866000 3336900 4628300 2912100 3100500 2864300 2582100 2984200 1665100 2717300 160920 2953400 3188400 4572000 2974600 3213900 2920300 2543200 2875100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 226250000 159010000 67245000 22235 3306 20440 115965;115966 140583 140583 1 YQIDPDACFSAK Unmodified 1413.6235 0.62346575 760 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.91 0.793 4 4 3 6 5 56.379 56.484 2;3 3.1929E-19 16136 20211116_3444_TMUAki_TMT10x_S_F5 221.6 196.04 58206000 94409000 396560 115390000 92961000 93523000 62174000 85853000 82074000 72993000 80604000 54196000 88172000 5311000 115910000 88361000 96452000 65292000 87292000 82573000 71819000 77801000 12 12 7 12 12 12 12 12 12 12 12 30369000 47404000 49608 60017000 64833000 74372000 44014000 43335000 42697000 37530000 40168000 28275000 44280000 2869500 60551000 61633000 74183000 45693000 45453000 43404000 36893000 38826000 6 6 3 6 6 6 6 6 6 6 6 27837000 47005000 346950 55374000 28128000 19151000 18160000 42518000 39377000 35463000 40436000 25920000 43892000 2441500 55358000 26728000 22269000 19599000 41839000 39169000 34925000 38975000 6 6 4 6 6 6 6 6 6 6 6 7920000000 4325300000 3594600000 22236 760 20441 115967;115968;115969;115970;115971;115972;115973;115974;115975;115976;115977 140584;140585;140586;140587;140588;140589;140590;140591;140592;140593;140594;140595;140596 140594 13 YQIHIPLPPK Unmodified 1204.6968 0.69682911 945 P35998;P35998-2 PSMC2 26S protease regulatory subunit 7 yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 56.123 55.891 3 0.00064196 16650 20211116_3440_TMUAki_TMT10x_S_F2 85.377 64.424 4850700 7627700 120190 8923700 6158000 6742000 5310200 6330200 5943900 5717700 6522400 4517400 7122300 532480 8979500 5890500 6993600 5450300 6438600 6039700 5609400 6274100 3 3 3 3 3 3 3 3 3 3 3 1759800 2734700 15919 3008700 3353200 3932900 2714900 2430600 2347500 2186200 2342900 1638700 2552800 183050 3063900 3200100 3915800 2775900 2539800 2404100 2145200 2260300 1 1 1 1 1 1 1 1 1 1 1 3090900 4893000 104270 5915000 2804800 2809100 2595300 3899600 3596400 3531500 4179500 2878700 4569500 349430 5915700 2690400 3077800 2674400 3898800 3635600 3464200 4013800 2 2 2 2 2 2 2 2 2 2 2 910930000 602260000 308660000 22237 945 20442 115978;115979;115980 140597;140598;140599;140600 140599 4 YQILPLHSQIPR Unmodified 1463.8249 0.82488317 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 By MS/MS By MS/MS 3.17 2.27 2 4 4 2 6 6 49.878 49.736 2;3 5.0858E-17 14101 20211116_3440_TMUAki_TMT10x_S_F2 209.64 185.79 36586000 61628000 372000 68829000 54904000 66015000 41506000 50725000 50491000 46512000 53332000 34065000 57532000 3235600 69667000 52304000 67082000 43080000 52220000 51073000 45600000 51359000 19 19 9 19 19 19 19 19 19 19 19 21424000 36007000 108830 39166000 40164000 52538000 29163000 30418000 30809000 28046000 31221000 19946000 33610000 1824800 39932000 38221000 52201000 30208000 31972000 31286000 27489000 30105000 11 11 5 11 11 11 11 11 11 11 11 15162000 25621000 263170 29664000 14740000 13477000 12343000 20308000 19682000 18466000 22111000 14118000 23922000 1410800 29734000 14084000 14881000 12873000 20247000 19788000 18111000 21254000 8 8 4 8 8 8 8 8 8 8 8 21175000000 12023000000 9152300000 22238 1546 20443 115981;115982;115983;115984;115985;115986;115987;115988;115989;115990;115991;115992 140601;140602;140603;140604;140605;140606;140607;140608;140609;140610;140611;140612;140613;140614;140615;140616;140617;140618;140619;140620 140613 20 YQILPLHSQIPREEQR Unmodified 2006.0698 0.069757905 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 42.335 42.666 4 3.4761E-11 10626 20211116_3447_TMUAki_TMT10x_S_F8 138.57 109.77 2966200 4662100 23224 5475100 5105200 5142200 3420800 4516100 4341500 3479800 4226400 2761800 4353200 274220 5523100 4852600 5245000 3586400 4592300 4372400 3441200 4080600 6 6 3 6 6 6 6 6 6 6 6 1817700 2679700 7468.6 3304900 3971300 4202400 2520200 2661600 2573500 2099500 2564700 1692400 2502800 168960 3340800 3770600 4191100 2633800 2767000 2615500 2073600 2474300 3 3 2 3 3 3 3 3 3 3 3 1148500 1982300 15756 2170200 1133900 939840 900640 1854600 1768000 1380300 1661700 1069400 1850400 105260 2182300 1082000 1053900 952610 1825200 1756900 1367600 1606200 3 3 1 3 3 3 3 3 3 3 3 612590000 387680000 224910000 22239 1546 20444 115993;115994;115995;115996 140621;140622;140623;140624;140625;140626 140626 6 YQLDKDGVVLFK Unmodified 1423.7711 0.77111627 533 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 1 By MS/MS By MS/MS 7 0.816 2 2 2 3 3 62.967 63.23 3 4.7908E-09 20634 20211116_3435_TMUAki_TMT10x_P_F7 148.91 108.34 76520000 141360000 748770 109520000 126320000 174940000 108370000 141440000 120450000 124420000 125810000 71252000 131780000 7559300 114950000 120700000 173430000 111230000 144990000 122200000 122220000 121200000 8 8 4 8 8 8 8 8 8 8 8 43166000 77182000 527250 60028000 82580000 129040000 72021000 77093000 68358000 68756000 67147000 40195000 71955000 4496800 63482000 78940000 126030000 73493000 80754000 69660000 67494000 64812000 4 4 2 4 4 4 4 4 4 4 4 33354000 64175000 221510 49488000 43740000 45907000 36346000 64344000 52094000 55667000 58668000 31057000 59827000 3062500 51469000 41764000 47402000 37742000 64231000 52541000 54725000 56391000 4 4 2 4 4 4 4 4 4 4 4 5541500000 3020400000 2521200000 22240 533 20445 115997;115998;115999;116000;116001;116002 140627;140628;140629;140630;140631;140632;140633;140634;140635 140628 9 YQLDKDGVVLFKK Unmodified 1551.8661 0.86607929 533 P07237 P4HB Protein disulfide-isomerase yes yes 0 0 0 2 By MS/MS By MS/MS 1 0 2 1 1 57.767 57.616 4 2.0701E-06 17127 20211116_3428_TMUAki_TMT10x_P_F1 116.96 95.088 12392000 21844000 83014 17610000 25695000 34257000 18108000 28359000 25043000 23292000 22290000 11539000 20367000 1285500 18513000 24452000 33739000 18979000 28979000 25076000 22957000 21588000 3 3 2 3 3 3 3 3 3 3 3 7751400 13236000 43921 10487000 20538000 28824000 14060000 18513000 16462000 15445000 13748000 7217600 12340000 857070 11167000 19532000 28001000 14675000 19251000 16546000 15211000 13346000 2 2 1 2 2 2 2 2 2 2 2 4640900 8608200 39093 7123200 5157600 5432300 4047200 9846100 8581000 7846300 8542400 4321400 8026800 428430 7346400 4919800 5737500 4303600 9728300 8529900 7745500 8241700 1 1 1 1 1 1 1 1 1 1 1 1102000000 868330000 233690000 22241 533 20446 116003;116004 140636;140637;140638 140637 3 YQLDPTASISAK Unmodified 1292.6612 0.66123147 1034 P45880;P45880-2;P45880-1 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 0 0 0 0 By MS/MS By MS/MS 5.92 0.828 5 4 4 6 7 53.819 54.157 2;3 1.0426E-30 17020 20211116_3435_TMUAki_TMT10x_P_F7 270.67 219.23 52354000 79623000 199730 98322000 107370000 95884000 62245000 77720000 83175000 63269000 74207000 48746000 74366000 4958400 98947000 101810000 97422000 66145000 79505000 83382000 62388000 71862000 12 12 4 12 12 12 12 12 12 12 12 35664000 52607000 199730 65031000 91056000 83456000 47975000 50947000 55485000 42202000 48600000 33207000 49135000 3739200 65741000 86226000 83152000 51148000 53178000 55874000 41577000 47096000 8 8 4 8 8 8 8 8 8 8 8 16690000 27015000 0 33291000 16312000 12428000 14270000 26773000 27690000 21068000 25607000 15539000 25232000 1219200 33207000 15579000 14270000 14997000 26326000 27509000 20811000 24766000 4 4 0 4 4 4 4 4 4 4 4 7502800000 4021000000 3481800000 22242 1034 20447 116005;116006;116007;116008;116009;116010;116011;116012;116013;116014;116015;116016;116017 140639;140640;140641;140642;140643;140644;140645;140646;140647;140648;140649;140650;140651;140652;140653;140654 140646 16 YQLEIKIPETYPFNPPK Unmodified 2076.0932 0.093178689 1293 P61086;P61086-3 UBE2K Ubiquitin-conjugating enzyme E2 K yes no 0 0 0 1 By MS/MS 4.5 3.5 1 1 2 74.031 74.041 4 0.00011613 23955 20211116_3436_TMUAki_TMT10x_P_F8 80.609 66.448 10554000 17484000 121530 14574000 10468000 21576000 12660000 13442000 13359000 13834000 13202000 9827100 16304000 930710 15178000 10096000 21366000 12748000 14089000 13554000 13495000 12740000 3 3 2 3 3 3 3 3 3 3 3 10554000 17484000 121530 14574000 10468000 21576000 12660000 13442000 13359000 13834000 13202000 9827100 16304000 930710 15178000 10096000 21366000 12748000 14089000 13554000 13495000 12740000 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 876440000 876440000 0 22243 1293 20448 116018;116019 140655;140656;140657 140657 3 YQLEIPENFTTR Unmodified 1509.7464 0.74635808 1183 P52701;P52701-3;P52701-4;P52701-2 MSH6 DNA mismatch repair protein Msh6 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 63.845 63.892 2 2.678E-15 19217 20211116_3444_TMUAki_TMT10x_S_F5 192.95 138.79 13220000 22445000 79963 22703000 15145000 20397000 15121000 16153000 15591000 16362000 17534000 12310000 20945000 1170200 23108000 14524000 20826000 15354000 16644000 15910000 15971000 16854000 6 6 4 6 6 6 6 6 6 6 6 6742100 11494000 57585 11051000 8167600 13931000 8338200 8257100 8223100 8682200 8696500 6277800 10723000 605240 11348000 7837500 13887000 8445400 8694400 8387400 8462000 8374600 3 3 1 3 3 3 3 3 3 3 3 6478200 10952000 22378 11652000 6977200 6465400 6782800 7895800 7368300 7679900 8837000 6032000 10222000 564930 11760000 6686500 6938500 6908400 7949300 7522500 7509500 8479300 3 3 3 3 3 3 3 3 3 3 3 1433700000 608140000 825610000 22244 1183 20449 116020;116021;116022;116023 140658;140659;140660;140661;140662;140663 140661 6 YQLLQLRPAQR Unmodified 1384.7939 0.7939174 2714 Q9BXJ9;Q9BXJ9-4 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes no 0 0 0 1 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 45.734 45.874 3 0.00032741 12976 20211116_3433_TMUAki_TMT10x_P_F5 86.189 60.251 21747000 33034000 299320 39676000 43444000 39718000 23698000 27084000 26754000 23035000 28539000 20251000 30849000 2385800 40008000 41178000 40175000 25165000 28054000 27147000 22664000 27475000 4 4 4 4 4 4 4 4 4 4 4 16151000 24350000 268540 29878000 37641000 35398000 19294000 20442000 19637000 16900000 21362000 15040000 22742000 1890300 30173000 35647000 35384000 20540000 21432000 20024000 16651000 20553000 3 3 3 3 3 3 3 3 3 3 3 5596200 8684200 30780 9798000 5802500 4320000 4404800 6642700 7116600 6135700 7177000 5210900 8107500 495540 9835000 5530400 4791000 4625000 6621500 7123400 6013400 6921500 1 1 1 1 1 1 1 1 1 1 1 997820000 634470000 363350000 22245 2714 20450 116024;116025;116026 140664;140665;140666;140667 140666 4 YQLLQLVEPFGVISNHLILNK Unmodified 2437.3733 0.37331671 1026 P43243;P43243-2 MATR3 Matrin-3 yes no 0 0 0 0 By MS/MS 6 0 1 1 80.952 80.952 3 0.060408 26512 20211116_3445_TMUAki_TMT10x_S_F6 32.833 22.776 642000 1114200 16531 1031700 833510 804010 835010 708070 701220 839210 893630 597890 1039400 71314 1054900 800250 830960 842770 728680 726060 814210 856090 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 642000 1114200 16531 1031700 833510 804010 835010 708070 701220 839210 893630 597890 1039400 71314 1054900 800250 830960 842770 728680 726060 814210 856090 1 1 1 1 1 1 1 1 1 1 1 687790000 0 687790000 22246 1026 20451 116027 140668 140668 1 YQNLSPVGSGAYGSVCAAFDTK Unmodified 2291.0528 0.052846792 1849 Q16539;Q16539-2;Q16539-5;Q16539-3;Q16539-4 MAPK14 Mitogen-activated protein kinase 14 yes no 0 0 0 0 By MS/MS 8 0 1 1 70.111 69.943 3 2.35E-05 21755 20211116_3447_TMUAki_TMT10x_S_F8 73.672 65.072 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22247 1849 20452 116028 140669 140669 1 YQPLASTASDNDFVTPEPR Unmodified 2106.9858 0.98581308 1754 Q15021 NCAPD2 Condensin complex subunit 1 yes yes 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 56.829 56.788 3 1.4278E-31 17169 20211116_3431_TMUAki_TMT10x_P_F4 186.05 170.16 2844100 5034000 15438 5168000 4475900 6795500 4203400 3961500 3770300 3571300 4122800 2648300 4697800 273040 5287100 4285800 6758800 4264600 4159100 3867100 3504000 3966200 2 2 2 2 2 2 2 2 2 2 2 2844100 5034000 15438 5168000 4475900 6795500 4203400 3961500 3770300 3571300 4122800 2648300 4697800 273040 5287100 4285800 6758800 4264600 4159100 3867100 3504000 3966200 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 983880000 983880000 0 22248 1754 20453 116029;116030 140670;140671 140670 2 YQQGDFGYCPR Unmodified 1389.5772 0.57718426 1412 P67870 CSNK2B Casein kinase II subunit beta yes yes 0 0 0 0 By MS/MS By MS/MS 4.75 0.829 2 1 1 2 2 41.304 41.413 2 9.8465E-45 11299 20211116_3442_TMUAki_TMT10x_S_F4 269.59 223.91 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22249 1412 20454 116031;116032;116033;116034 140672;140673;140674;140675 140674 4 YQQLFEDIRGQSDIAITK Unmodified 2124.0851 0.085133198 911 P33991 MCM4 DNA replication licensing factor MCM4 yes yes 0 0 0 1 By MS/MS By MS/MS 6.71 1.03 1 2 2 2 4 3 71.955 72.002 3 4.4152E-58 22866 20211116_3445_TMUAki_TMT10x_S_F6 250.22 215.95 122820000 201910000 1266500 193690000 125410000 188840000 137460000 119100000 119780000 124480000 148320000 114360000 188370000 10637000 198100000 120580000 191110000 138250000 124770000 123650000 121350000 142200000 13 13 8 13 13 13 13 13 13 13 13 77087000 124190000 761320 120140000 72756000 142380000 86430000 74304000 74999000 77517000 91473000 71775000 115870000 6359400 123180000 70107000 142140000 86601000 79078000 77383000 75575000 87730000 8 8 5 8 8 8 8 8 8 8 8 45733000 77723000 505160 73544000 52659000 46467000 51027000 44793000 44786000 46964000 56849000 42585000 72508000 4277600 74918000 50476000 48970000 51651000 45692000 46263000 45778000 54467000 5 5 3 5 5 5 5 5 5 5 5 17074000000 8233000000 8840700000 22250 911 20455 116035;116036;116037;116038;116039;116040;116041 140676;140677;140678;140679;140680;140681;140682;140683;140684;140685;140686;140687;140688 140684 13 YQQPFEDFR Unmodified 1228.5513 0.55128709 728 P19174-2;P19174 PLCG1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 51.371 51.27 2 6.1652E-06 16552 20211116_3430_TMUAki_TMT10x_P_F3 164.96 123.3 10880000 17584000 61987 21060000 17261000 20110000 12264000 12074000 12404000 11148000 14201000 10131000 16420000 1043900 21225000 16429000 20365000 12706000 12653000 12677000 10926000 13643000 4 4 3 4 4 4 4 4 4 4 4 8899900 14086000 55860 17372000 15499000 18494000 10749000 9744700 10187000 8800900 11603000 8287000 13156000 877020 17507000 14745000 18574000 11134000 10321000 10438000 8634300 11149000 3 3 2 3 3 3 3 3 3 3 3 1980300 3497600 6127.7 3688500 1762100 1616600 1515400 2328900 2217100 2347200 2598200 1843900 3264400 166840 3718400 1683700 1790700 1571800 2332400 2238300 2291600 2494600 1 1 1 1 1 1 1 1 1 1 1 937430000 851990000 85440000 22251 728 20456 116042;116043;116044 140689;140690;140691;140692 140690 4 YQQQYLQPLPLTHYELVTDAFGHR Unmodified 2916.4559 0.45587715 2562 Q96T37;Q96T37-4;Q96T37-2;Q96T37-3 RBM15 Putative RNA-binding protein 15 yes no 0 0 0 0 By MS/MS 8 0 1 1 72.022 72.068 4 0.0043964 23151 20211116_3436_TMUAki_TMT10x_P_F8 51.398 37.526 4762100 8207600 0 8829200 10094000 13043000 6530100 7669700 8613700 7273800 6610900 4433400 7660900 390920 9026300 9584000 12907000 6874700 8057300 8600700 7120200 6439300 1 1 0 1 1 1 1 1 1 1 1 4762100 8207600 0 8829200 10094000 13043000 6530100 7669700 8613700 7273800 6610900 4433400 7660900 390920 9026300 9584000 12907000 6874700 8057300 8600700 7120200 6439300 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 966840000 966840000 0 22252 2562 20457 116045 140693 140693 1 YQRGECQACDQLHFCR Unmodified 2126.8833 0.88329582 2482 Q96H79 ZC3HAV1L Zinc finger CCCH-type antiviral protein 1-like yes yes 0 0 0 1 By MS/MS 4 0 1 1 33.075 33.101 4 0.072564 7591 20211116_3431_TMUAki_TMT10x_P_F4 37.583 33.035 567550 953540 14479 1043200 1805000 1745900 775950 721750 1030800 782230 924450 528550 890080 77879 1068400 1705700 1712300 848780 787320 1033700 761470 895080 1 1 1 1 1 1 1 1 1 1 1 567550 953540 14479 1043200 1805000 1745900 775950 721750 1030800 782230 924450 528550 890080 77879 1068400 1705700 1712300 848780 787320 1033700 761470 895080 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29852000 29852000 0 22253 2482 20458 116046 140694 140694 1 YQVFFFGTHETAFLGPK Unmodified 1987.9832 0.98323431 1165 P51858;P51858-3;P51858-2 HDGF Hepatoma-derived growth factor yes no 0 0 0 0 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 77.106 77.018 3 2.2268E-15 27044 20211116_3430_TMUAki_TMT10x_P_F3 143.14 124.31 12698000 19824000 81029 16708000 12543000 26386000 14412000 13476000 16553000 18072000 15734000 11823000 18486000 1113300 17410000 12078000 25993000 14587000 14490000 16717000 17461000 15203000 3 3 2 3 3 3 3 3 3 3 3 9272300 13828000 81029 11703000 8258900 21196000 9855700 9449500 11844000 12991000 10677000 8634100 12895000 830060 12231000 7964100 20743000 9975200 10306000 11921000 12542000 10335000 2 2 2 2 2 2 2 2 2 2 2 3425300 5995700 0 5005300 4283900 5189900 4556300 4026100 4708800 5080800 5057400 3189200 5590900 283210 5179000 4113600 5249600 4612100 4183800 4796100 4918700 4867900 1 1 0 1 1 1 1 1 1 1 1 1802300000 698430000 1103900000 22254 1165 20459 116047;116048;116049 140695;140696;140697 140695 3 YQVGVHYELTEEEK Unmodified 1722.8101 0.81008055 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 46.515 46.452 3 3.9425E-19 15630 20211116_3441_TMUAki_TMT10x_S_F3 167.32 138.69 18490000 31383000 397430 37283000 28812000 33588000 22617000 20567000 19830000 19300000 23050000 17219000 29305000 1790300 37562000 27493000 34152000 23179000 21530000 20410000 18901000 22136000 9 9 7 9 9 9 9 9 9 9 9 13229000 22839000 353130 27203000 23471000 29311000 17852000 15261000 14558000 14233000 16649000 12320000 21327000 1311700 27475000 22384000 29414000 18300000 16195000 15029000 13943000 15996000 6 6 4 6 6 6 6 6 6 6 6 5261000 8543800 44302 10080000 5341100 4276900 4765300 5305400 5271800 5066800 6400800 4898900 7978000 478590 10088000 5109500 4738000 4879500 5335200 5381000 4958300 6139600 3 3 3 3 3 3 3 3 3 3 3 2376300000 1428400000 947890000 22255 1695 20460 116050;116051;116052;116053;116054;116055 140698;140699;140700;140701;140702;140703;140704;140705;140706 140705 9 YQVSWSLDHK Unmodified 1261.6091 0.60913632 1156 P51571 SSR4 Translocon-associated protein subunit delta yes yes 0 0 0 0 By MS/MS By matching 7 0 2 1 1 49.01 49.564 3 0.0038739 15142 20211116_3435_TMUAki_TMT10x_P_F7 66.617 48.002 3175000 4497200 194100 5458900 5639600 6668400 4009100 3589700 4005000 3099200 3255600 2957700 4200000 478640 5519100 5378300 6649600 4151700 3790400 4048000 3047100 3163800 1 1 1 1 1 1 1 1 1 1 1 3175000 4497200 194100 5458900 5639600 6668400 4009100 3589700 4005000 3099200 3255600 2957700 4200000 478640 5519100 5378300 6649600 4151700 3790400 4048000 3047100 3163800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 591270000 379620000 211660000 22256 1156 20461 116056;116057 140707 140707 1 YQWMLYKSK Oxidation (M) 1261.6165 0.61652988 2031 Q6ZMZ3;Q6ZMZ3-2 SYNE3 Nesprin-3 yes no 0 0 1 1 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 43.983 43.919 4 0.05257 11505 20211116_3428_TMUAki_TMT10x_P_F1 46.158 22.409 5134200 7793200 66807 9176800 6819700 5019500 5436500 2783100 2691100 2899200 5282700 4780900 7277100 511530 9202000 6508300 5319700 5501800 2946000 2949900 2826700 5015800 3 3 3 3 3 3 3 3 3 3 3 2783700 3980700 32101 4698400 4345200 3261000 3090500 1078100 868760 1201200 2446400 2592200 3717100 282580 4720900 4136800 3361700 3131700 1210000 1037000 1168000 2311100 1 1 1 1 1 1 1 1 1 1 1 2350500 3812600 34706 4478400 2474400 1758500 2346000 1705000 1822400 1698000 2836300 2188800 3560000 228950 4481000 2371500 1958000 2370100 1736000 1912900 1658600 2704700 2 2 2 2 2 2 2 2 2 2 2 551980000 287540000 264440000 22257 2031 20462 116058;116059;116060 140708;140709 140708 2557 2 YQYGGLNSGRPVTPPR Unmodified 1760.8958 0.89581629 1334 P62140 PPP1CB Serine/threonine-protein phosphatase PP1-beta catalytic subunit yes yes 0 0 0 1 By MS/MS By MS/MS 1.6 0.49 2 3 3 2 33.328 33.272 3 7.4036E-29 8515 20211116_3428_TMUAki_TMT10x_P_F1 183.73 163.68 12426000 22718000 200530 28172000 15375000 25673000 13376000 21481000 25659000 18802000 22655000 11571000 21219000 1184900 28318000 14699000 26214000 14053000 21971000 25459000 18474000 21948000 6 6 5 6 6 6 6 6 6 6 6 2248500 4161600 94137 5003400 7258300 8184600 4407500 4209900 5192300 3707200 3669100 2094300 3886400 344310 5092400 6893600 8052400 4644100 4465800 5193800 3641400 3586600 3 3 3 3 3 3 3 3 3 3 3 10177000 18557000 106390 23169000 8116500 17488000 8968600 17271000 20466000 15095000 18986000 9476400 17333000 840590 23225000 7805500 18161000 9408600 17506000 20265000 14832000 18361000 3 3 2 3 3 3 3 3 3 3 3 1763900000 1046400000 717580000 22258 1334 20463 116061;116062;116063;116064;116065 140710;140711;140712;140713;140714;140715;140716 140711 7 YRCELLYEGPPDDEAAMGIK Oxidation (M) 2342.0559 0.055883259 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 1 1 By MS/MS By MS/MS 3.35 1.41 2 3 4 4 3 1 8 9 55.749 55.673 3;4 6.3169E-18 16639 20211116_3431_TMUAki_TMT10x_P_F4 141.07 126.76 146370000 252300000 1948000 250150000 162010000 194420000 144210000 150200000 144900000 151080000 175810000 136290000 235420000 13528000 254520000 154970000 200510000 147230000 154970000 148470000 147520000 168640000 32 32 22 32 32 32 32 32 32 32 32 66984000 112540000 794280 111360000 80709000 126370000 77690000 63618000 64751000 65853000 78007000 62371000 105010000 6011000 113910000 77329000 126400000 78562000 67916000 66910000 64224000 74840000 13 13 9 13 13 13 13 13 13 13 13 79385000 139760000 1153700 138800000 81301000 68057000 66515000 86584000 80145000 85231000 97801000 73923000 130410000 7517100 140610000 77643000 74112000 68664000 87057000 81564000 83297000 93799000 19 19 13 19 19 19 19 19 19 19 19 30006000000 14441000000 15565000000 22259 653 20464 116066;116067;116068;116069;116070;116071;116072;116073;116074;116075;116076;116077;116078;116079;116080;116081;116082 140717;140718;140719;140720;140721;140722;140723;140724;140725;140726;140727;140728;140729;140730;140731;140732;140733;140734;140735;140736;140737;140738;140739;140740;140741;140742;140743;140744;140745;140746;140747;140748 140723 705 32 YRCELLYEGPPDDEAAMGIK Unmodified 2326.061 0.060968637 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 1 By MS/MS By MS/MS 3.94 1.3 3 3 4 4 2 8 8 61.69 61.624 3;4 4.9913E-51 21874 20211116_3441_TMUAki_TMT10x_S_F3 220.82 209.87 161850000 255550000 1631300 295180000 161570000 148980000 159150000 73022000 65719000 79636000 150630000 150700000 238600000 14112000 296150000 154910000 159080000 158670000 78275000 73959000 77505000 142670000 26 26 16 26 26 26 26 26 26 26 26 91512000 141500000 973600 161770000 94841000 109180000 98229000 42672000 38796000 46445000 83307000 85209000 132110000 8030900 162810000 91049000 112980000 97621000 46856000 43648000 45205000 78985000 14 14 8 14 14 14 14 14 14 14 14 70337000 114040000 657660 133410000 66729000 39794000 60920000 30349000 26923000 33191000 67318000 65493000 106490000 6080800 133330000 63856000 46102000 61045000 31419000 30311000 32299000 63689000 12 12 8 12 12 12 12 12 12 12 12 17652000000 9430600000 8221500000 22260 653 20464 116083;116084;116085;116086;116087;116088;116089;116090;116091;116092;116093;116094;116095;116096;116097;116098 140749;140750;140751;140752;140753;140754;140755;140756;140757;140758;140759;140760;140761;140762;140763;140764;140765;140766;140767;140768;140769;140770;140771;140772;140773;140774;140775 140766 27 YRDAGLHCLELGHTGEAGPHAMVR Oxidation (M) 2662.2493 0.24927196 157 O15067 PFAS Phosphoribosylformylglycinamidine synthase yes yes 0 0 1 1 By MS/MS By MS/MS 4.71 0.452 2 5 5 2 33.964 34.001 4;5;6 1.9757E-48 8234 20211116_3433_TMUAki_TMT10x_P_F5 213.2 197.4 2980400 5038700 57498 5420200 5887800 6183400 4087900 3728700 3872700 3167700 4176100 2775400 4703000 333150 5513900 5603200 6197000 4233900 3898200 3960000 3116800 4019100 8 8 6 8 8 8 8 8 8 8 8 2323000 4014400 46346 4370300 5143000 5563700 3332700 3120600 3228500 2588900 3386900 2163200 3747200 267030 4451200 4888100 5539400 3471900 3280200 3294600 2550400 3262300 6 6 4 6 6 6 6 6 6 6 6 657410 1024300 11152 1049900 744750 619710 755150 608130 644240 578750 789230 612190 955830 66120 1062800 715040 657590 762010 618010 665400 566450 756850 2 2 2 2 2 2 2 2 2 2 2 898670000 856150000 42521000 22261 157 20465 116099;116100;116101;116102;116103;116104;116105 140776;140777;140778;140779;140780;140781 140781 121 6 YRDLDEDEILGALTEEELR Unmodified 2278.0965 0.096485745 841 P28289 TMOD1 Tropomodulin-1 yes yes 0 0 0 1 By MS/MS 1 0 1 1 77.364 77.311 3 0.0064602 27123 20211116_3439_TMUAki_TMT10x_S_F1 55.744 38.044 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22262 841 20466 116106 140782 140782 1 YRDQIPSPGLMVFPKPVTALEYTFSR Oxidation (M) 3027.5528 0.552814 1225 P54709;P54709-2 ATP1B3 Sodium/potassium-transporting ATPase subunit beta-3 yes no 0 0 1 2 By MS/MS By MS/MS 4 0 2 1 1 76.679 76.656 4 2.4802E-08 25724 20211116_3442_TMUAki_TMT10x_S_F4 88.394 69.991 18950000 31351000 271870 29407000 22092000 27171000 22389000 19695000 18197000 19489000 23984000 17645000 29246000 1800200 30104000 21202000 27650000 22565000 20396000 18901000 19042000 22957000 3 3 2 3 3 3 3 3 3 3 3 8066100 12950000 3099.1 11446000 7349700 14495000 9447900 7844000 7053400 7583800 9294300 7510300 12078000 661590 11829000 7100200 14429000 9399600 8303100 7359900 7417400 8896500 1 1 1 1 1 1 1 1 1 1 1 10884000 18401000 268770 17960000 14742000 12677000 12941000 11851000 11144000 11905000 14689000 10135000 17169000 1138600 18275000 14102000 13221000 13165000 12093000 11542000 11625000 14061000 2 2 1 2 2 2 2 2 2 2 2 2434700000 1163800000 1270900000 22263 1225 20467 116107;116108 140783;140784;140785 140784 1644 3 YRDVAECGPQQELDLNSPR Unmodified 2246.0386 0.038593711 2663 Q9BTE3;Q9BTE3-2 MCMBP Mini-chromosome maintenance complex-binding protein yes no 0 0 0 1 By MS/MS By MS/MS 3.2 0.748 1 2 2 2 3 44.447 44.448 3 5.2093E-71 14861 20211116_3441_TMUAki_TMT10x_S_F3 288.69 275.5 6661000 11269000 41883 13877000 7577500 8155300 5721200 9121900 9726700 7346900 9046500 6201700 10525000 526070 13887000 7216400 8682700 6024300 9172600 9695800 7248500 8747900 7 7 3 7 7 7 7 7 7 7 7 2226400 3694600 19635 4133400 4582300 5793400 3404500 2962200 3106200 2467100 2700900 2073000 3449100 219460 4210500 4364200 5735900 3505700 3139800 3158700 2429900 2618000 3 3 1 3 3 3 3 3 3 3 3 4434600 7574000 22248 9744000 2995200 2361900 2316600 6159800 6620400 4879800 6345600 4128700 7075500 306610 9676800 2852200 2946800 2518600 6032800 6537100 4818600 6129900 4 4 2 4 4 4 4 4 4 4 4 2928300000 1765500000 1162700000 22264 2663 20468 116109;116110;116111;116112;116113 140786;140787;140788;140789;140790;140791;140792 140791 7 YRDVSPFDHSR Unmodified 1377.6426 0.64256171 713 P18031 PTPN1 Tyrosine-protein phosphatase non-receptor type 1 yes yes 0 0 0 1 By MS/MS 5 0 1 1 31.991 31.931 4 0.0059107 7466 20211116_3433_TMUAki_TMT10x_P_F5 63.611 50.843 282340 591690 32256 568890 772050 825560 455770 358150 415230 337890 492900 263130 552030 60329 585810 734280 814690 477590 387130 426960 330840 473080 1 1 1 1 1 1 1 1 1 1 1 282340 591690 32256 568890 772050 825560 455770 358150 415230 337890 492900 263130 552030 60329 585810 734280 814690 477590 387130 426960 330840 473080 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 43461000 43461000 0 22265 713 20469 116114 140793 140793 1 YRFEIAAEK Unmodified 1125.5819 0.58185893 2458 Q96FC7;Q96FC7-2 PHYHIPL Phytanoyl-CoA hydroxylase-interacting protein-like yes no 0 0 0 1 By MS/MS 7 0 1 1 43.644 44.192 3 0.052387 13472 20211116_3446_TMUAki_TMT10x_S_F7 45.603 22.724 1338500 2083800 12481 2450700 1273300 1115600 1280100 1594000 1500500 1451200 1760600 1246400 1945800 121690 2454300 1221800 1229600 1304900 1592300 1526000 1423200 1690300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1338500 2083800 12481 2450700 1273300 1115600 1280100 1594000 1500500 1451200 1760600 1246400 1945800 121690 2454300 1221800 1229600 1304900 1592300 1526000 1423200 1690300 1 1 1 1 1 1 1 1 1 1 1 45098000 0 45098000 22266 2458 20470 116115 140794 140794 1 YRGFTIPEAFR Unmodified 1355.6986 0.69862003 80 O00299 CLIC1 Chloride intracellular channel protein 1 yes yes 0 0 0 1 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 55.368 55.083 3 8.9095E-08 16034 20211116_3428_TMUAki_TMT10x_P_F1 119.21 87.279 12673000 22617000 154920 22170000 18656000 17264000 12545000 24039000 21963000 19592000 20749000 11801000 21102000 1255500 22575000 17743000 18043000 13336000 23966000 21888000 19317000 20054000 7 7 5 7 7 7 7 7 7 7 7 2045100 3401900 6653.2 3427600 3777700 5930200 2813000 3565600 3607300 3242100 3304500 1904200 3174500 200020 3532300 3598400 5833800 2928400 3734900 3624300 3179700 3197100 1 1 1 1 1 1 1 1 1 1 1 10628000 19215000 148260 18743000 14879000 11334000 9731900 20473000 18356000 16350000 17445000 9896400 17928000 1055500 19043000 14144000 12209000 10408000 20231000 18264000 16138000 16857000 6 6 4 6 6 6 6 6 6 6 6 3266900000 982020000 2284900000 22267 80 20471 116116;116117;116118;116119;116120;116121 140795;140796;140797;140798;140799;140800;140801;140802;140803 140795 9 YRGQHVPGSPFQFTVGPLGEGGAHK Unmodified 2622.3092 0.30915333 1703 Q14315;Q14315-2 FLNC Filamin-C yes no 0 0 0 1 By MS/MS 2 0 1 1 50.59 50.44 5 6.1947E-12 14513 20211116_3440_TMUAki_TMT10x_S_F2 117.4 104.36 1373900 2279000 44506 2421000 1249200 1116200 1020200 1919200 1982200 1658900 1948700 1279500 2127100 153630 2440300 1194700 1235700 1076600 1903000 1973300 1630800 1880800 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1373900 2279000 44506 2421000 1249200 1116200 1020200 1919200 1982200 1658900 1948700 1279500 2127100 153630 2440300 1194700 1235700 1076600 1903000 1973300 1630800 1880800 1 1 1 1 1 1 1 1 1 1 1 253600000 0 253600000 22268 1703 20472 116122 140804 140804 1 YRHPECFVCADCNLNLK Unmodified 2194.971 0.97104819 1904 Q53GG5-2;Q53GG5 PDLIM3 PDZ and LIM domain protein 3 yes no 0 0 0 1 By MS/MS 7 0 1 1 45.595 46.129 4 0.00042894 13836 20211116_3435_TMUAki_TMT10x_P_F7 72.11 61.322 13325000 23542000 20366 33337000 35816000 28269000 18547000 12436000 11549000 11620000 17135000 12407000 22004000 1379600 33242000 33905000 28755000 19499000 13419000 12254000 11382000 16356000 4 4 1 4 4 4 4 4 4 4 4 13325000 23542000 20366 33337000 35816000 28269000 18547000 12436000 11549000 11620000 17135000 12407000 22004000 1379600 33242000 33905000 28755000 19499000 13419000 12254000 11382000 16356000 4 4 1 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 681610000 681610000 0 22269 1904 20473 116123 140805;140806;140807;140808 140808 4 YRLPVATR Unmodified 974.56615 0.56614929 3296 Q9Y4C2;Q9Y4C2-2 TCAF1 TRPM8 channel-associated factor 1 yes no 0 0 0 1 By MS/MS 3 0 1 1 33.838 33.598 3 0.0046349 10485 20211116_3441_TMUAki_TMT10x_S_F3 85.67 62.242 269750 430110 0 446370 272740 232640 296990 256360 256580 231000 342670 251130 401400 17861 451030 261830 250710 298730 258690 265850 226660 327900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 269750 430110 0 446370 272740 232640 296990 256360 256580 231000 342670 251130 401400 17861 451030 261830 250710 298730 258690 265850 226660 327900 1 1 0 1 1 1 1 1 1 1 1 11487000 0 11487000 22270 3296 20474 116124 140809 140809 1 YRPASASVSALIGGR Unmodified 1503.8158 0.81577505 1045 P46108-2 CRK Adapter molecule crk yes yes 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 45.195 45.305 3 2.175E-19 12845 20211116_3442_TMUAki_TMT10x_S_F4 168.67 130.27 1170400 2001700 22922 2215500 1242900 1039100 1110600 1696700 1670000 1515200 1731800 1089900 1868600 119410 2227500 1189800 1145900 1150700 1686500 1676600 1487300 1668700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1170400 2001700 22922 2215500 1242900 1039100 1110600 1696700 1670000 1515200 1731800 1089900 1868600 119410 2227500 1189800 1145900 1150700 1686500 1676600 1487300 1668700 1 1 1 1 1 1 1 1 1 1 1 353040000 60239000 292800000 22271 1045 20475 116125;116126;116127 140810;140811 140811 2 YRPCSLGR Unmodified 1007.4971 0.49708345 991 P40938;P40938-2 RFC3 Replication factor C subunit 3 yes no 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 28.536 28.419 3 0.0061834 6957 20211116_3429_TMUAki_TMT10x_P_F2 80.787 56.156 276710 407660 7886.6 395700 396180 517910 308700 335820 281260 277140 382980 257700 380350 31400 406350 378120 515980 316850 348870 290940 273090 366300 2 2 1 2 2 2 2 2 2 2 2 276710 407660 7886.6 395700 396180 517910 308700 335820 281260 277140 382980 257700 380350 31400 406350 378120 515980 316850 348870 290940 273090 366300 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10272000 10272000 0 22272 991 20476 116128;116129 140812;140813 140813 2 YRPGTVALR Unmodified 1031.5876 0.58761301 1421 P68431;Q71DI3;Q16695;P84243;Q6NXT2 HIST1H3A;HIST2H3A;HIST3H3;H3F3A;H3F3C Histone H3.1;Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.3C yes no 0 0 0 1 By MS/MS By MS/MS 3.8 2.11 4 10 7 8 4 2 1 5 19 22 28.032 28.056 2;3 2.1404E-06 9586 20211116_3441_TMUAki_TMT10x_S_F3 187.5 136.44 302210000 503800000 947390 541620000 467200000 434110000 369010000 282920000 287450000 300970000 381760000 281370000 470240000 24918000 548000000 442950000 437050000 376810000 294740000 296280000 293200000 365250000 39 39 11 38 38 38 39 38 38 39 39 150790000 250610000 531610 245390000 355430000 354540000 164170000 174720000 183990000 168260000 205770000 140400000 233830000 14234000 252080000 335960000 350410000 177140000 186530000 187080000 164600000 197830000 17 17 2 16 17 17 17 17 17 17 17 151410000 253190000 415780 296230000 111770000 79570000 204850000 108190000 103470000 132710000 175990000 140970000 236410000 10684000 295920000 107000000 86639000 199680000 108210000 109200000 128600000 167430000 22 22 9 22 21 21 22 21 21 22 22 315220000000 172600000000 142620000000 22273 1421 20477 116130;116131;116132;116133;116134;116135;116136;116137;116138;116139;116140;116141;116142;116143;116144;116145;116146;116147;116148;116149;116150;116151;116152;116153;116154;116155;116156;116157;116158;116159;116160;116161;116162;116163;116164;116165;116166;116167;116168;116169;116170 140814;140815;140816;140817;140818;140819;140820;140821;140822;140823;140824;140825;140826;140827;140828;140829;140830;140831;140832;140833;140834;140835;140836;140837;140838;140839;140840;140841;140842;140843;140844;140845;140846;140847;140848;140849;140850;140851;140852;140853;140854;140855;140856;140857;140858;140859;140860;140861 140850 48 YRPGTVALREIR Unmodified 1429.8154 0.81538112 1421 P68431;Q71DI3;Q16695;P84243;Q6NXT2 HIST1H3A;HIST2H3A;HIST3H3;H3F3A;H3F3C Histone H3.1;Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.3C yes no 0 0 0 2 By MS/MS By MS/MS 1.75 0.829 4 2 2 4 4 33.656 33.543 3;4 2.2951E-13 8920 20211116_3429_TMUAki_TMT10x_P_F2 179.59 142.74 6824200 10842000 49084 10578000 10102000 10851000 7520700 10278000 9801700 8364100 9896300 6354200 10115000 630950 10814000 9622200 11025000 7834100 10422000 9875100 8247700 9543700 7 7 3 7 7 7 7 7 7 7 7 2457200 3759900 13455 3844900 5343600 6487400 3001500 3847500 3712100 2979200 3293100 2287800 3508700 239870 3956000 5064600 6386600 3189000 4019200 3730500 2945500 3189700 3 3 1 3 3 3 3 3 3 3 3 4367000 7081600 35628 6733200 4757900 4363600 4519100 6430400 6089600 5384900 6603200 4066300 6606600 391080 6858200 4557700 4638000 4645100 6402400 6144600 5302200 6354000 4 4 2 4 4 4 4 4 4 4 4 769140000 491650000 277500000 22274 1421 20478 116171;116172;116173;116174;116175;116176;116177;116178 140862;140863;140864;140865;140866;140867;140868 140864 7 YRPLFDYFLK Unmodified 1360.718 0.71795849 1002 P41252 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 74.277 74.271 3 1.3796E-06 24322 20211116_3431_TMUAki_TMT10x_P_F4 150.04 100.54 26638000 42656000 420050 42358000 33441000 39829000 35606000 27790000 24038000 29614000 30404000 24806000 39802000 2695200 43195000 32145000 40461000 35646000 28917000 25187000 28847000 29132000 5 5 5 5 5 5 5 5 5 5 5 12007000 18588000 114290 18333000 13993000 24035000 15500000 12447000 10714000 13341000 12910000 11180000 17343000 1129800 18806000 13462000 23873000 15496000 13267000 11187000 12993000 12386000 2 2 2 2 2 2 2 2 2 2 2 14631000 24068000 305760 24025000 19448000 15794000 20106000 15343000 13324000 16273000 17493000 13625000 22458000 1565500 24389000 18683000 16588000 20150000 15650000 14000000 15854000 16746000 3 3 3 3 3 3 3 3 3 3 3 2517500000 1447700000 1069800000 22275 1002 20479 116179;116180;116181;116182 140869;140870;140871;140872;140873 140869 5 YRPQTLNDLISHQDILSTIQK Unmodified 2482.318 0.31798668 990 P40937;P40937-2 RFC5 Replication factor C subunit 5 yes no 0 0 0 1 By MS/MS 2 0 1 1 68.68 68.478 4 2.3247E-05 21850 20211116_3440_TMUAki_TMT10x_S_F2 79.635 64.381 3883000 6518300 32413 6356700 3956400 5275600 4839600 4285000 4103200 3995800 4769600 3615700 6081700 353170 6480200 3817800 5418900 4840000 4398100 4230200 3914400 4580400 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3883000 6518300 32413 6356700 3956400 5275600 4839600 4285000 4103200 3995800 4769600 3615700 6081700 353170 6480200 3817800 5418900 4840000 4398100 4230200 3914400 4580400 1 1 1 1 1 1 1 1 1 1 1 398800000 0 398800000 22276 990 20480 116183 140874 140874 1 YRPYDGAASAYAQNYR Unmodified 1864.8493 0.84926002 155 O15027;O15027-5;O15027-2;O15027-4;O15027-3 SEC16A Protein transport protein Sec16A yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 37.228 37.739 3 9.1746E-43 8384 20211116_3447_TMUAki_TMT10x_S_F8 226.67 206.01 240430 467420 6790.7 520580 214020 180330 182260 359880 431110 351670 379350 223900 436350 16859 522230 204700 208730 194230 356590 425860 343790 367550 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 240430 467420 6790.7 520580 214020 180330 182260 359880 431110 351670 379350 223900 436350 16859 522230 204700 208730 194230 356590 425860 343790 367550 3 3 1 3 3 3 3 3 3 3 3 7755500 0 7755500 22277 155 20481 116184;116185 140875;140876;140877;140878 140877 4 YRSDGALLLGASSLSGR Unmodified 1721.906 0.90604662 2627 Q9BQA1;Q9BQA1-2 WDR77 Methylosome protein 50 yes no 0 0 0 1 By MS/MS By MS/MS 2.8 2.64 2 2 1 3 2 52.784 52.657 3 1.9051E-21 16616 20211116_3429_TMUAki_TMT10x_P_F2 165.17 110.83 26230000 42177000 545320 48332000 37664000 45663000 32479000 34735000 31376000 29740000 37048000 24426000 39379000 2447200 48832000 36016000 46437000 33182000 35718000 32169000 29251000 35564000 7 7 5 7 7 7 7 7 7 7 7 17661000 27315000 505930 30574000 25448000 36772000 22700000 21909000 20650000 19127000 24266000 16448000 25500000 2044800 31053000 24362000 36744000 23106000 22942000 21226000 18795000 23297000 4 4 4 4 4 4 4 4 4 4 4 8568100 14862000 39396 17758000 12216000 8891100 9778800 12827000 10726000 10613000 12782000 7978000 13879000 402340 17779000 11654000 9693000 10076000 12776000 10944000 10456000 12267000 3 3 1 3 3 3 3 3 3 3 3 7044500000 4321900000 2722600000 22278 2627 20482 116186;116187;116188;116189;116190 140879;140880;140881;140882;140883;140884;140885 140880 7 YRTDEVEVTWRD Unmodified 1567.7267 0.72668527 2892 Q9NPF4 OSGEP Probable tRNA N6-adenosine threonylcarbamoyltransferase yes yes 0 0 0 2 By MS/MS By MS/MS 3 0.707 1 2 1 1 3 43.257 43.245 3 3.0461E-16 14406 20211116_3441_TMUAki_TMT10x_S_F3 200.16 160.53 1995400 3165100 34360 3735500 2525000 2206700 2139100 2141400 2019800 1990900 2758900 1858100 2955500 204870 3747700 2413500 2340800 2186300 2176100 2086200 1950600 2638500 3 3 3 3 3 3 3 3 3 3 3 562450 882970 21910 1013100 1079500 1033200 752140 464800 453110 471220 701450 523860 824390 74291 1024600 1028100 1038500 770780 501450 482860 459950 668980 1 1 1 1 1 1 1 1 1 1 1 1432900 2282100 12450 2722400 1445500 1173500 1387000 1676600 1566700 1519700 2057400 1334300 2131100 130580 2723100 1385300 1302300 1415500 1674600 1603400 1490700 1969500 2 2 2 2 2 2 2 2 2 2 2 177850000 43689000 134160000 22279 2892 20483 116191;116192;116193;116194 140886;140887;140888 140888 3 YRVPDVLVADPPIAR Unmodified 1679.9359 0.93589019 1730 Q14697;Q14697-2 GANAB Neutral alpha-glucosidase AB yes no 0 0 0 1 By MS/MS By MS/MS 6.56 1.07 2 2 3 2 4 5 57.407 57.638 2;3 2.4791E-27 18956 20211116_3446_TMUAki_TMT10x_S_F7 178.53 145.69 56575000 91027000 908190 97304000 72820000 91119000 64376000 66245000 62962000 62118000 70424000 52682000 84961000 5576000 98730000 69656000 92649000 65697000 68486000 64380000 60838000 67705000 13 13 9 13 13 13 13 13 13 13 13 33853000 53193000 666240 58228000 47432000 69280000 41596000 39614000 37050000 36460000 41089000 31525000 49653000 3489100 59212000 45365000 69230000 42357000 41680000 38034000 35739000 39512000 7 7 5 7 7 7 7 7 7 7 7 22722000 37834000 241950 39076000 25389000 21839000 22780000 26631000 25912000 25659000 29335000 21158000 35308000 2086900 39518000 24290000 23419000 23340000 26806000 26346000 25100000 28192000 6 6 4 6 6 6 6 6 6 6 6 20127000000 10909000000 9217800000 22280 1730 20484 116195;116196;116197;116198;116199;116200;116201;116202;116203 140889;140890;140891;140892;140893;140894;140895;140896;140897;140898;140899;140900;140901 140901 13 YRWTEYGLTFTEK Unmodified 1692.8148 0.814772 760 P21796 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 0 0 0 1 By MS/MS 8 0 1 1 62.674 62.862 3 3.7785E-06 19310 20211116_3436_TMUAki_TMT10x_P_F8 108.71 87.155 17050000 28360000 62196 28579000 17743000 29119000 21620000 13460000 9544500 15973000 18088000 15876000 26464000 1460400 29148000 17113000 29279000 21354000 14550000 10542000 15497000 17184000 2 2 1 2 2 2 2 2 2 2 2 17050000 28360000 62196 28579000 17743000 29119000 21620000 13460000 9544500 15973000 18088000 15876000 26464000 1460400 29148000 17113000 29279000 21354000 14550000 10542000 15497000 17184000 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 655240000 655240000 0 22281 760 20485 116204 140902;140903 140902 2 YSASKPLK Unmodified 892.50182 0.5018177 786 P23526;P23526-2 AHCY Adenosylhomocysteinase yes no 0 0 0 1 By MS/MS By MS/MS 1 0 2 1 1 34.129 34.124 3 0.010964 9569 20211116_3439_TMUAki_TMT10x_S_F1 71.614 43.871 1951200 3482500 8598.5 2655700 2342900 2756400 2134000 1439300 1511100 1451800 2221500 1816800 3246400 175270 2769200 2241700 2772200 2156300 1530200 1589700 1417400 2121000 2 2 2 2 2 2 2 2 2 2 2 953220 1712900 5593 1278900 1311600 1861600 1098600 733060 767410 736930 1092900 887590 1596700 89261 1344100 1252700 1835200 1115200 802400 806750 719560 1044200 1 1 1 1 1 1 1 1 1 1 1 997990 1769600 3005.4 1376800 1031200 894770 1035400 706210 743670 714900 1128600 929250 1649700 86007 1425100 989080 937030 1041000 727810 782990 697850 1076800 1 1 1 1 1 1 1 1 1 1 1 58252000 29470000 28782000 22282 786 20486 116205;116206 140904;140905 140905 2 YSDIDIILLKGDVEEDETIPDSEQDIRPR Unmodified 3372.6573 0.65727489 2381 Q92973;Q92973-2;Q92973-3 TNPO1 Transportin-1 yes no 0 0 0 2 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 77.044 76.998 4 4.9439E-18 27031 20211116_3439_TMUAki_TMT10x_S_F1 126.99 117.37 5637000 9869800 0 8563600 6457900 9966400 7108800 7249700 7330800 7203600 7884100 5247000 9204600 284330 8849500 6195800 10006000 7183600 7506700 7467800 7037300 7588400 2 2 0 2 2 2 2 2 2 2 2 3215300 5374200 0 4865600 3419100 6684400 3901100 4004200 4010900 3817700 4250100 2993000 5012800 170550 5026800 3284100 6637200 3935200 4200800 4084100 3736200 4092600 1 1 0 1 1 1 1 1 1 1 1 2421600 4495500 0 3698100 3038700 3282000 3207700 3245600 3319900 3385900 3634000 2254000 4191800 113780 3822700 2911700 3368300 3248400 3305900 3383600 3301100 3495800 1 1 0 1 1 1 1 1 1 1 1 2399100000 1974200000 424880000 22283 2381 20487 116207;116208;116209 140906;140907 140907 2 YSDMIVAAIQAEK Oxidation (M) 1453.7123 0.71228076 534 P07305;P07305-2 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes no 0 0 1 0 By MS/MS By MS/MS 5.16 1.69 2 3 4 4 5 6 1 15 10 61.643 61.722 2;3 3.3384E-11 20234 20211116_3444_TMUAki_TMT10x_S_F5 147.62 125.49 126890000 213000000 819920 197210000 171700000 276070000 159300000 247660000 248470000 236270000 198580000 118140000 198690000 10562000 203480000 164290000 275740000 164990000 252900000 247100000 231220000 193110000 28 28 13 28 28 28 28 28 28 28 28 78353000 129890000 486260 117940000 114040000 216710000 105370000 148990000 150640000 143760000 118910000 72951000 121150000 6654200 122640000 109110000 213160000 108730000 154740000 150140000 140620000 115690000 20 20 9 20 20 20 20 20 20 20 20 48538000 83110000 333660 79273000 57657000 59357000 53932000 98672000 97826000 92504000 79672000 45191000 77536000 3907300 80844000 55175000 62581000 56259000 98155000 96956000 90598000 77418000 8 8 4 8 8 8 8 8 8 8 8 20135000000 12669000000 7465700000 22284 534 20488 116210;116211;116212;116213;116214;116215;116216;116217;116218;116219;116220;116221;116222;116223;116224;116225;116226;116227;116228;116229;116230;116231;116232;116233;116234 140908;140909;140910;140911;140912;140913;140914;140915;140916;140917;140918;140919;140920;140921;140922;140923;140924;140925;140926;140927;140928;140929;140930;140931;140932;140933;140934;140935;140936;140937;140938;140939;140940;140941;140942;140943;140944 140937 459 37 YSDMIVAAIQAEK Unmodified 1437.7174 0.71736614 534 P07305;P07305-2 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes no 0 0 0 0 By MS/MS By MS/MS 6.26 1.48 4 4 4 4 7 14 9 73.175 73.196 2;3 7.5781E-30 26785 20211116_3435_TMUAki_TMT10x_P_F7 250.48 215.95 186900000 296910000 389300 314700000 228030000 211990000 219100000 104610000 78409000 130480000 212520000 174010000 277110000 14085000 318250000 218290000 219880000 218360000 112550000 90683000 126370000 200860000 23 23 10 23 23 23 23 23 23 23 23 80097000 122210000 51600 127290000 98204000 128920000 96553000 47008000 34637000 57294000 90020000 74572000 114060000 6200800 129530000 94076000 129390000 96107000 52236000 39912000 55532000 85125000 13 13 5 13 13 13 13 13 13 13 13 106810000 174690000 337700 187400000 129820000 83067000 122550000 57599000 43772000 73190000 122500000 99436000 163060000 7884600 188720000 124210000 90486000 122250000 60314000 50771000 70839000 115730000 10 10 5 10 10 10 10 10 10 10 10 23304000000 10625000000 12679000000 22285 534 20488 116235;116236;116237;116238;116239;116240;116241;116242;116243;116244;116245;116246;116247;116248;116249;116250;116251;116252;116253;116254;116255;116256;116257 140945;140946;140947;140948;140949;140950;140951;140952;140953;140954;140955;140956;140957;140958;140959;140960;140961;140962;140963;140964;140965;140966;140967;140968;140969;140970 140952 26 YSEEANNLIEECEQAER Unmodified 2082.88 0.88002738 2484 Q96HE7 ERO1L ERO1-like protein alpha yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 56.104 55.953 3 1.0441E-15 18496 20211116_3439_TMUAki_TMT10x_S_F1 152.33 136.39 4903000 9140600 148140 8699800 6885400 10024000 5763400 9393200 7443600 7975900 8485600 4566200 8527500 568010 8926100 6582500 10116000 5956700 9539800 7536000 7848100 8153500 3 3 2 3 3 3 3 3 3 3 3 1955300 3687100 23491 3203000 3938900 7037400 3456700 4096600 2938300 3207500 3649400 1820700 3438700 211780 3359100 3766100 6866600 3515500 4287000 3037200 3169200 3498400 1 1 1 1 1 1 1 1 1 1 1 2947700 5453500 124650 5496800 2946500 2986800 2306700 5296600 4505300 4768500 4836200 2745500 5088800 356230 5567000 2816400 3249500 2441300 5252800 4498900 4678900 4655000 2 2 1 2 2 2 2 2 2 2 2 854160000 529460000 324700000 22286 2484 20489 116258;116259 140971;140972;140973 140972 3 YSEEGVYNVQYSFIK Unmodified 1824.857 0.85703074 2952 Q9NUJ1;Q9NUJ1-2 ABHD10 Mycophenolic acid acyl-glucuronide esterase, mitochondrial yes no 0 0 0 0 By MS/MS 6 0 1 1 68.897 68.82 3 0.059226 21570 20211116_3445_TMUAki_TMT10x_S_F6 39.685 27.892 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22287 2952 20490 116260 140974 140974 1 YSESLLCSNLESATYSNR Unmodified 2092.9371 0.93714833 1829 Q15785 TOMM34 Mitochondrial import receptor subunit TOM34 yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 60.755 60.82 3 1.1583E-31 17973 20211116_3444_TMUAki_TMT10x_S_F5 193.32 182.85 14441000 23092000 217900 23100000 17592000 20639000 17414000 16042000 14175000 15664000 18645000 13447000 21547000 1378100 23528000 16872000 21074000 17573000 16531000 14721000 15314000 17848000 7 7 5 7 7 7 7 7 7 7 7 6313000 9375100 182160 10032000 7903300 12537000 8786000 6749000 6193600 6676800 7970000 5879400 8750400 715430 10225000 7611200 12487000 8785600 7151900 6477400 6523900 7633300 3 3 3 3 3 3 3 3 3 3 3 8127800 13717000 35739 13068000 9688800 8101800 8628000 9292900 7981100 8987600 10675000 7567500 12797000 662690 13303000 9261300 8586700 8787200 9379100 8243300 8790300 10214000 4 4 2 4 4 4 4 4 4 4 4 2829600000 1928900000 900740000 22288 1829 20491 116261;116262;116263;116264 140975;140976;140977;140978;140979;140980;140981 140980 7 YSFLQFDPAPR Unmodified 1339.6561 0.65608651 1363 P67775;P62714;P67775-2 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform yes no 0 0 0 0 By MS/MS By MS/MS 4.71 3.24 3 2 2 4 3 69.28 69.377 2 6.8857E-08 23941 20211116_3439_TMUAki_TMT10x_S_F1 142 106.64 61548000 106990000 209840 111340000 72633000 76518000 70047000 51778000 49668000 52117000 75753000 57306000 99854000 5087700 112750000 69568000 79544000 70556000 53903000 52346000 50886000 72268000 7 7 3 7 7 7 7 7 7 7 7 19028000 33064000 101580 35510000 20655000 34675000 21696000 16931000 16829000 16890000 23926000 17717000 30862000 1579000 36041000 19830000 34977000 21802000 18108000 17585000 16497000 22861000 2 2 1 2 2 2 2 2 2 2 2 42520000 73930000 108260 75827000 51978000 41843000 48352000 34847000 32839000 35227000 51827000 39589000 68992000 3508700 76713000 49738000 44566000 48755000 35795000 34761000 34389000 49408000 5 5 2 5 5 5 5 5 5 5 5 5923200000 3362100000 2561100000 22289 1363 20492 116265;116266;116267;116268;116269;116270;116271 140982;140983;140984;140985;140986;140987;140988;140989 140985 8 YSGAYGASVSDEELK Unmodified 1574.71 0.71003215 3003 Q9NX63 CHCHD3 MICOS complex subunit MIC19 yes yes 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 49.53 49.428 3 3.2368E-06 14609 20211116_3442_TMUAki_TMT10x_S_F4 101.75 84.542 4127900 6554200 49687 8737600 3531500 2896200 2592700 6485800 6951500 4280100 6413900 3843600 6123900 348170 8672200 3363500 3391400 2813900 6347200 6862100 4271000 6203900 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4127900 6554200 49687 8737600 3531500 2896200 2592700 6485800 6951500 4280100 6413900 3843600 6123900 348170 8672200 3363500 3391400 2813900 6347200 6862100 4271000 6203900 2 2 1 2 2 2 2 2 2 2 2 305260000 0 305260000 22290 3003 20493 116272;116273 140990;140991 140990 2 YSGLCPHVVVLVATVR Unmodified 1768.9658 0.96581011 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS 3.5 0.5 1 1 2 60.21 60.139 3 0.00015824 18496 20211116_3431_TMUAki_TMT10x_P_F4 79.013 64.323 3915800 6311400 0 6791600 6494800 9492500 5639600 4914700 4619500 4542100 5443300 3645500 5891000 298210 6935000 6202000 9400800 5733600 5216800 4773400 4451400 5225400 1 1 0 1 1 1 1 1 1 1 1 3915800 6311400 0 6791600 6494800 9492500 5639600 4914700 4619500 4542100 5443300 3645500 5891000 298210 6935000 6202000 9400800 5733600 5216800 4773400 4451400 5225400 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 861460000 861460000 0 22291 629 20494 116274;116275 140992 140992 1 YSGPEDDAAISLAFSK Unmodified 1669.7835 0.78353145 625 P11388;P11388-2;P11388-3;P11388-4 TOP2A DNA topoisomerase 2-alpha yes no 0 0 0 0 By MS/MS By MS/MS 4.12 0.781 2 3 3 4 4 71.782 71.648 2;3 1.9697E-51 23246 20211116_3431_TMUAki_TMT10x_P_F4 241.51 206.98 38049000 63123000 566280 59652000 42000000 59375000 44273000 44478000 44031000 46156000 47969000 35430000 58887000 3533200 61096000 40350000 60169000 44781000 46024000 44945000 45009000 46152000 9 9 6 9 9 9 9 9 9 9 9 19957000 32104000 178830 30695000 21170000 40086000 24116000 24169000 24015000 24300000 24475000 18582000 29951000 1693000 31554000 20374000 39900000 24305000 25380000 24452000 23727000 23596000 4 4 2 4 4 4 4 4 4 4 4 18092000 31018000 387450 28957000 20830000 19288000 20157000 20310000 20016000 21856000 23494000 16848000 28936000 1840200 29542000 19975000 20269000 20476000 20644000 20493000 21282000 22556000 5 5 4 5 5 5 5 5 5 5 5 2691100000 1220800000 1470300000 22292 625 20495 116276;116277;116278;116279;116280;116281;116282;116283 140993;140994;140995;140996;140997;140998;140999;141000;141001;141002;141003;141004 140997 12 YSGPEDDAAISLAFSKK Unmodified 1797.8785 0.87849447 625 P11388;P11388-2;P11388-3;P11388-4 TOP2A DNA topoisomerase 2-alpha yes no 0 0 0 1 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 64.007 64.255 3 6.427E-09 21076 20211116_3435_TMUAki_TMT10x_P_F7 121.03 101.95 38458000 65253000 263290 61402000 47233000 62485000 41588000 64286000 60931000 56386000 57094000 35809000 60874000 2865100 62929000 45160000 63629000 43079000 65034000 61004000 55395000 55196000 6 6 3 6 6 6 6 6 6 6 6 14884000 24248000 226730 23737000 19537000 38792000 19552000 27404000 25191000 23564000 21041000 13860000 22624000 1474900 24477000 18745000 38335000 20007000 28322000 25233000 23172000 20426000 3 3 2 3 3 3 3 3 3 3 3 23573000 41005000 36560 37665000 27696000 23692000 22036000 36882000 35740000 32822000 36054000 21949000 38250000 1390200 38452000 26415000 25294000 23072000 36712000 35771000 32223000 34770000 3 3 1 3 3 3 3 3 3 3 3 4753100000 2881500000 1871600000 22293 625 20496 116284;116285;116286;116287;116288 141005;141006;141007;141008;141009;141010 141006 6 YSGRDSLIFLVDASK Unmodified 1669.8675 0.86753585 647 P12956;P12956-2 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 0 1 By MS/MS By MS/MS 8 0 2 1 1 67.956 67.955 3 5.0274E-14 20965 20211116_3447_TMUAki_TMT10x_S_F8 141.13 112.15 14173000 22416000 119160 23159000 19784000 18254000 14417000 14808000 14355000 13722000 16381000 13196000 20920000 1254200 23501000 18835000 18821000 14902000 15197000 14679000 13446000 15739000 2 2 1 2 2 2 2 2 2 2 2 7453200 10922000 0 11595000 7042900 12147000 7662200 6988500 6863300 6558800 7664600 6938800 10194000 501700 11789000 6761500 12225000 7715000 7352900 7045600 6423400 7369000 1 1 0 1 1 1 1 1 1 1 1 6719600 11494000 119160 11565000 12741000 6107000 6754600 7819800 7492200 7163100 8716100 6257500 10726000 752480 11711000 12073000 6596500 7187300 7844500 7633200 7022900 8370200 1 1 1 1 1 1 1 1 1 1 1 2597700000 1343200000 1254500000 22294 647 20497 116289;116290 141011;141012 141012 2 YSGSYNDYLR Unmodified 1236.5411 0.54111633 2534 Q96PK6 RBM14 RNA-binding protein 14 yes yes 0 0 0 0 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 44.895 45.04 2 0.0014453 12665 20211116_3433_TMUAki_TMT10x_P_F5 89.609 81.34 5931200 9539500 40276 10852000 20140000 12701000 8268200 10171000 13720000 7677800 11507000 5522800 8906300 728270 11006000 19015000 12768000 9176300 10394000 13641000 7601300 11169000 2 2 2 2 2 2 2 2 2 2 2 3299700 5130900 14683 5855000 16969000 10196000 5283500 5595800 7558800 4092300 5989300 3072400 4790400 478690 5986900 15977000 10016000 6040700 5876600 7534500 4058700 5826300 1 1 1 1 1 1 1 1 1 1 1 2631500 4408600 25593 4996900 3171000 2505200 2984700 4575400 6161400 3585500 5517200 2450400 4115900 249580 5018900 3037400 2752300 3135600 4517900 6106300 3542600 5342200 1 1 1 1 1 1 1 1 1 1 1 278800000 175200000 103600000 22295 2534 20498 116291;116292;116293 141013;141014 141013 2 YSGTLNLDR Unmodified 1037.5142 0.5141733 1092 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 0 By MS/MS 3 0 1 1 39.873 39.926 2 0.00091463 11842 20211116_3430_TMUAki_TMT10x_P_F3 108.26 77.692 668760 956210 3744.1 1116100 1509400 1236100 707910 700020 744840 613230 800700 622680 892850 67327 1129100 1427100 1239800 761120 736190 758110 602490 770670 2 2 1 2 2 2 2 2 2 2 2 668760 956210 3744.1 1116100 1509400 1236100 707910 700020 744840 613230 800700 622680 892850 67327 1129100 1427100 1239800 761120 736190 758110 602490 770670 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30637000 30637000 0 22296 1092 20499 116294 141015;141016 141015 2 YSHLQPGDHLTDITLK Unmodified 1836.937 0.9370124 1760 Q15046;Q15046-2 KARS Lysine--tRNA ligase yes no 0 0 0 0 By MS/MS By MS/MS 6.25 0.433 3 1 3 1 48.392 48.675 3;4 5.5959E-15 13246 20211116_3445_TMUAki_TMT10x_S_F6 144.05 125.46 11517000 19716000 66361 21606000 23728000 30907000 14571000 17314000 16733000 14362000 15234000 10724000 18404000 1176900 22047000 22524000 30607000 15325000 18201000 16875000 14148000 14742000 4 4 3 4 4 4 4 4 4 4 4 10001000 16949000 66361 18225000 22287000 29651000 13534000 15184000 14615000 12504000 12929000 9312800 15820000 1063100 18673000 21153000 29176000 14219000 16088000 14762000 12322000 12524000 3 3 3 3 3 3 3 3 3 3 3 1515200 2766600 0 3380800 1441200 1256600 1036700 2130100 2117400 1858000 2304600 1410700 2583900 113830 3373800 1371000 1430800 1106200 2113500 2113400 1825800 2217400 1 1 0 1 1 1 1 1 1 1 1 2077500000 1566700000 510800000 22297 1760 20500 116295;116296;116297;116298 141017;141018;141019;141020;141021 141021 5 YSIVFIAR Unmodified 967.5491 0.54910224 34;35 CON__Q2KJ62;CON__P01044-1;CON__P01045-1 no no 0 0 0 0 By MS/MS 3 0 1 1 26.263 25.97 3 0.077576 7487 20211116_3441_TMUAki_TMT10x_S_F3 34.931 17.692 + 67507 129260 0 96251 83956 59721 74910 63797 55478 71757 81806 62852 120490 5389.6 99977 80245 63185 75856 64897 58224 69753 78100 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 67507 129260 0 96251 83956 59721 74910 63797 55478 71757 81806 62852 120490 5389.6 99977 80245 63185 75856 64897 58224 69753 78100 1 1 0 1 1 1 1 1 1 1 1 4906500 0 4906500 22298 34;35 20501 116299 141022 141022 1 YSLDPENPTK Unmodified 1162.5506 0.55061839 721 P18621;P18621-3 RPL17 60S ribosomal protein L17 yes no 0 0 0 0 By MS/MS By MS/MS 3.86 0.639 2 4 1 3 4 45.508 45.529 2;3 2.8238E-19 12586 20211116_3431_TMUAki_TMT10x_P_F4 253.63 183.38 13542000 18859000 107970 31436000 49121000 31447000 18351000 21101000 27091000 14517000 23626000 12609000 17644000 1658600 31181000 46329000 31803000 20494000 21779000 27055000 14449000 22898000 7 7 5 7 7 7 7 7 7 7 7 10017000 13858000 107970 22118000 47010000 29546000 16192000 15004000 19325000 10772000 17124000 9328100 12962000 1449200 22092000 44307000 29315000 18132000 15862000 19445000 10695000 16587000 5 5 5 5 5 5 5 5 5 5 5 3524700 5000900 0 9317800 2111200 1901000 2159300 6097200 7765800 3744700 6501300 3281300 4682500 209350 9089900 2021400 2488400 2361300 5917000 7610100 3754200 6310800 2 2 0 2 2 2 2 2 2 2 2 1795900000 1248100000 547870000 22299 721 20502 116300;116301;116302;116303;116304;116305;116306 141023;141024;141025;141026;141027;141028;141029;141030;141031 141024 9 YSLEPVAVELK Unmodified 1246.6809 0.68090428 473 P00558;P00558-2 PGK1 Phosphoglycerate kinase 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.62 1 2 4 4 3 6 7 66.044 65.99 2;3 2.4128E-23 19948 20211116_3434_TMUAki_TMT10x_P_F6 246.59 192.81 91140000 129480000 206090 202820000 80101000 73780000 76296000 52821000 58516000 60667000 91981000 84856000 121100000 6772700 199800000 76668000 82650000 77039000 54997000 61495000 58928000 87694000 16 16 6 16 16 16 16 16 16 16 16 32756000 44044000 23517 70510000 35169000 39914000 28130000 18262000 20780000 21585000 30668000 30497000 41197000 2420100 69605000 33523000 42062000 28674000 19759000 21813000 20944000 29278000 6 6 1 6 6 6 6 6 6 6 6 58384000 85439000 182580 132310000 44933000 33866000 48166000 34559000 37735000 39082000 61312000 54359000 79898000 4352600 130190000 43146000 40588000 48365000 35237000 39682000 37983000 58416000 10 10 5 10 10 10 10 10 10 10 10 10283000000 4508000000 5774900000 22300 473 20503 116307;116308;116309;116310;116311;116312;116313;116314;116315;116316;116317;116318;116319 141032;141033;141034;141035;141036;141037;141038;141039;141040;141041;141042;141043;141044;141045;141046;141047 141037 16 YSLQSANASSLSSGQLK Unmodified 1739.869 0.86899241 2792 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein yes yes 0 0 0 0 By MS/MS 8 0 1 1 52.846 52.941 3 4.1815E-05 15320 20211116_3436_TMUAki_TMT10x_P_F8 83.404 60.267 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22301 2792 20504 116320 141048 141048 1 YSLRDEFPLLTTK Unmodified 1581.8403 0.84025847 493 P04818;P04818-2 TYMS Thymidylate synthase yes no 0 0 0 1 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 67.919 68.137 3 2.6507E-12 21428 20211116_3436_TMUAki_TMT10x_P_F8 157.68 125.52 74212000 129670000 2231100 128650000 76429000 116650000 84425000 69737000 62895000 63499000 85063000 69115000 120990000 8222800 131140000 73617000 118520000 84552000 73085000 65714000 62274000 81371000 9 9 8 9 9 9 9 9 9 9 9 47952000 82277000 2110100 82300000 47587000 88685000 57623000 44573000 40195000 40069000 52508000 44664000 76773000 5937000 84054000 46008000 88961000 57385000 47410000 42091000 39319000 50271000 6 6 6 6 6 6 6 6 6 6 6 26260000 47395000 120960 46348000 28842000 27968000 26802000 25164000 22700000 23430000 32555000 24451000 44221000 2285800 47082000 27609000 29562000 27166000 25675000 23623000 22954000 31100000 3 3 2 3 3 3 3 3 3 3 3 5860200000 3098200000 2761900000 22302 493 20505 116321;116322;116323;116324 141049;141050;141051;141052;141053;141054;141055;141056;141057 141052 9 YSLRDEFPLLTTKR Unmodified 1737.9414 0.94136949 493 P04818;P04818-2 TYMS Thymidylate synthase yes no 0 0 0 2 By matching By MS/MS 2.33 0.471 2 1 1 2 58.495 58.196 4 6.7571E-14 17617 20211116_3440_TMUAki_TMT10x_S_F2 152.34 125.2 6160500 10537000 26007 10034000 7452800 5414100 4896000 6262600 5577600 5499100 7550300 5735700 9830000 486400 10203000 7079000 5819500 5121000 6301700 5714400 5402200 7222400 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6160500 10537000 26007 10034000 7452800 5414100 4896000 6262600 5577600 5499100 7550300 5735700 9830000 486400 10203000 7079000 5819500 5121000 6301700 5714400 5402200 7222400 3 3 1 3 3 3 3 3 3 3 3 1499300000 765110000 734230000 22303 493 20506 116325;116326;116327 141058;141059;141060 141058 3 YSLVLELSDSGAFRR Unmodified 1711.8893 0.88933392 2878 Q9HDC9 APMAP Adipocyte plasma membrane-associated protein yes yes 0 0 0 1 By MS/MS 1.5 0.5 1 1 2 69.202 69.015 3 0.0016086 23801 20211116_3439_TMUAki_TMT10x_S_F1 66.387 50.163 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22304 2878 20507 116328;116329 141061;141062 141061 2 YSNDLYELQASR Unmodified 1457.6787 0.67867245 1160 P51610;P51610-2;P51610-4;P51610-3 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 50.083 50.246 2 1.684E-11 14491 20211116_3431_TMUAki_TMT10x_P_F4 162.1 130.68 2170600 3810800 0 4244000 5280000 5606500 3408500 3217600 2792900 2713500 2899800 2021000 3557500 216640 4319400 5015200 5573800 3536200 3376900 2872000 2670900 2794000 1 1 0 1 1 1 1 1 1 1 1 2170600 3810800 0 4244000 5280000 5606500 3408500 3217600 2792900 2713500 2899800 2021000 3557500 216640 4319400 5015200 5573800 3536200 3376900 2872000 2670900 2794000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 284450000 284450000 0 22305 1160 20508 116330;116331 141063;141064 141063 2 YSNENLDLAR Unmodified 1193.5677 0.56766543 955 P36776;P36776-3;P36776-2 LONP1 Lon protease homolog, mitochondrial yes no 0 0 0 0 By MS/MS 3 0 1 1 38 38.027 2 0.050952 11152 20211116_3430_TMUAki_TMT10x_P_F3 61.833 37.057 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22306 955 20509 116332 141065 141065 1 YSNFVSFPLYLNGR Unmodified 1675.8358 0.83584179 1578 Q12931;Q12931-2 TRAP1 Heat shock protein 75 kDa, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 77.938 77.949 2 2.7786E-09 25882 20211116_3431_TMUAki_TMT10x_P_F4 111.94 81.682 3153400 5330500 0 4962700 4393800 3173600 3868800 3200200 2827700 2895100 3936200 2935700 4972600 228080 5062000 4196500 3344000 3919500 3243200 2961600 2840000 3762800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3153400 5330500 0 4962700 4393800 3173600 3868800 3200200 2827700 2895100 3936200 2935700 4972600 228080 5062000 4196500 3344000 3919500 3243200 2961600 2840000 3762800 1 1 0 1 1 1 1 1 1 1 1 479630000 0 479630000 22307 1578 20510 116333;116334 141066;141067 141066 2 YSNSDVIIYVGCGER Unmodified 1730.7934 0.79338463 971 P38606;P38606-2 ATP6V1A V-type proton ATPase catalytic subunit A yes no 0 0 0 0 By MS/MS 4 0 2 2 56.733 56.686 2;3 7.0426E-20 17626 20211116_3442_TMUAki_TMT10x_S_F4 152.18 136.28 1748100 3181800 0 3029300 2018000 1667400 1691400 1875800 2014700 1770800 2278600 1627300 2968400 94820 3080800 1923200 1787300 1742800 1893600 2044800 1733800 2189900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1748100 3181800 0 3029300 2018000 1667400 1691400 1875800 2014700 1770800 2278600 1627300 2968400 94820 3080800 1923200 1787300 1742800 1893600 2044800 1733800 2189900 1 1 0 1 1 1 1 1 1 1 1 129800000 0 129800000 22308 971 20511 116335;116336 141068;141069 141069 2 YSPYSIPVPVPDGSSLLTTALPSMAAAAGPLDGK Unmodified 3342.7057 0.7057454 164 O15119;O15119-2 TBX3 T-box transcription factor TBX3 yes no 0 0 0 0 By MS/MS By matching 2 0 2 1 1 81.755 81.747 4 0.00016266 28469 20211116_3429_TMUAki_TMT10x_P_F2 61.941 47.533 1232900 1866900 7870.2 2021800 1190500 1811800 1551200 852780 777530 974490 1370500 1148000 1742600 108950 2048500 1151000 1837100 1530600 919090 845900 946730 1303800 2 2 2 2 2 2 2 2 2 2 2 1232900 1866900 7870.2 2021800 1190500 1811800 1551200 852780 777530 974490 1370500 1148000 1742600 108950 2048500 1151000 1837100 1530600 919090 845900 946730 1303800 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 559280000 191420000 367860000 22309 164 20512 116337;116338 141070;141071 141070 2 YSQKEDKYEEEIK Unmodified 1687.7941 0.79409613 526;527;525 P06753-2;P06753-3;P06753-5;P06753-4;P06753-7;P06753-6;P06753 TPM3 Tropomyosin alpha-3 chain no no 0 0 0 2 By MS/MS 5 1 1 1 2 39.533 39.561 4 0.0017372 9159 20211116_3434_TMUAki_TMT10x_P_F6 76.151 48.654 3164700 4899900 64302 5764100 19987000 8881400 5059500 4852900 6287300 3533000 5754500 2947100 4575400 557910 5865900 18793000 8765000 5950600 5097900 6323600 3504900 5567600 2 2 2 2 2 2 2 2 2 2 2 3164700 4899900 64302 5764100 19987000 8881400 5059500 4852900 6287300 3533000 5754500 2947100 4575400 557910 5865900 18793000 8765000 5950600 5097900 6323600 3504900 5567600 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 356580000 356580000 0 22310 526;527;525 20513 116339;116340 141072;141073 141073 2 YSQLVVETIR Unmodified 1206.6608 0.66083754 2336 Q92522 H1FX Histone H1x yes yes 0 0 0 0 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 55.052 55.303 2 1.3358E-09 15580 20211116_3434_TMUAki_TMT10x_P_F6 187.99 151.44 46596000 74014000 64871 84221000 64525000 76044000 52273000 62206000 62429000 59046000 66615000 43385000 69101000 3027800 85076000 61554000 77662000 53977000 63850000 63215000 57798000 64132000 7 7 2 7 7 7 7 7 7 7 7 22456000 34989000 64871 38184000 45662000 52942000 28165000 28637000 29349000 27766000 30060000 20908000 32660000 2145100 38949000 43341000 52478000 29520000 30317000 29831000 27153000 28976000 4 4 2 4 4 4 4 4 4 4 4 24140000 39025000 0 46037000 18863000 23101000 24108000 33568000 33080000 31281000 36555000 22477000 36440000 882630 46127000 18213000 25184000 24457000 33533000 33383000 30645000 35156000 3 3 0 3 3 3 3 3 3 3 3 4816600000 2761500000 2055000000 22311 2336 20514 116341;116342;116343;116344;116345;116346 141074;141075;141076;141077;141078;141079;141080;141081 141075 8 YSQLVVETIRR Unmodified 1362.7619 0.76194857 2336 Q92522 H1FX Histone H1x yes yes 0 0 0 1 By MS/MS By MS/MS 4.09 3.06 4 2 3 2 6 5 47.111 47.084 2;3 8.0754E-16 14217 20211116_3435_TMUAki_TMT10x_P_F7 180.09 141.07 13788000 21361000 131270 25242000 19905000 21044000 15159000 21230000 22112000 18970000 20905000 12839000 19946000 1345100 25414000 18974000 21701000 15839000 21508000 22148000 18620000 20204000 8 8 7 8 8 8 8 8 8 8 8 5745000 8401000 63670 9860800 12999000 13934000 7781300 8408300 8524800 7965800 8302500 5349600 7844500 637230 10017000 12336000 13820000 8188700 8814600 8632100 7798100 8016000 3 3 3 3 3 3 3 3 3 3 3 8043500 12960000 67595 15381000 6906100 7109500 7377200 12821000 13587000 11004000 12603000 7489700 12102000 707830 15397000 6637400 7881300 7650600 12693000 13516000 10822000 12188000 5 5 4 5 5 5 5 5 5 5 5 5918500000 3390100000 2528400000 22312 2336 20515 116347;116348;116349;116350;116351;116352;116353;116354;116355;116356;116357 141082;141083;141084;141085;141086;141087;141088;141089;141090;141091;141092 141085 11 YSQTGNYELAVALSR Unmodified 1670.8264 0.82639932 976 P39656;P39656-3;P39656-2 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 2 4 2 4 58.759 59.205 2;3 1.2967E-73 17598 20211116_3445_TMUAki_TMT10x_S_F6 335 306.27 24740000 41860000 201180 41257000 29886000 27620000 25487000 27291000 25034000 27465000 31264000 23036000 39058000 2127800 41927000 28546000 28971000 26069000 27770000 25709000 26817000 29967000 6 6 2 6 6 6 6 6 6 6 6 3786500 6294400 0 5745100 3722000 7083200 4447600 3844600 3817400 3981800 4384900 3525500 5871300 301000 5919700 3586300 7060600 4454000 4076500 3931300 3883100 4212400 1 1 0 1 1 1 1 1 1 1 1 20954000 35566000 201180 35511000 26164000 20537000 21040000 23447000 21217000 23484000 26879000 19510000 33187000 1826800 36007000 24959000 21911000 21615000 23693000 21777000 22934000 25754000 5 5 2 5 5 5 5 5 5 5 5 3258400000 786740000 2471600000 22313 976 20516 116358;116359;116360;116361;116362;116363 141093;141094;141095;141096;141097;141098;141099;141100 141096 8 YSQVLANGLDNK Unmodified 1320.6674 0.66737948 1345 P62269 RPS18 40S ribosomal protein S18 yes yes 0 0 0 0 By MS/MS By MS/MS 6 0 4 2 2 53.886 53.986 2;3 3.0478E-13 15084 20211116_3434_TMUAki_TMT10x_P_F6 145.14 111.06 8370100 13060000 161530 15850000 13964000 12237000 9236300 11911000 12063000 9684300 13379000 7794600 12197000 922830 15918000 13281000 12682000 9703500 12060000 12195000 9549900 12865000 2 2 2 2 2 2 2 2 2 2 2 3314100 5518200 83558 6390900 9223000 7989900 4792400 4738400 5017500 3943900 5270800 3086400 5152400 435400 6482100 8737100 7967900 5099800 4958000 5103600 3884600 5076700 1 1 1 1 1 1 1 1 1 1 1 5056000 7541400 77969 9459000 4741300 4247100 4443900 7172100 7045800 5740400 8107800 4708200 7044100 487430 9436300 4543400 4713900 4603700 7101700 7091700 5665300 7788400 1 1 1 1 1 1 1 1 1 1 1 875150000 512140000 363010000 22314 1345 20517 116364;116365;116366;116367 141101;141102;141103;141104 141102 4 YSSDVQEMILSSATADRIPIAVSGVR Unmodified 2764.4065 0.40654369 2350 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 1 By MS/MS 8 0 1 1 77.778 77.784 3 7.284E-06 25491 20211116_3436_TMUAki_TMT10x_P_F8 68.689 58.901 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22315 2350 20518 116368 141105 141105 1 YSSNLGNFNYER Unmodified 1462.6477 0.64770667 2744 Q9BZZ5-2;Q9BZZ5-5 API5 Apoptosis inhibitor 5 yes no 0 0 0 0 By MS/MS By MS/MS 6 0 2 1 1 47.03 47.191 2 1.6903E-15 12304 20211116_3434_TMUAki_TMT10x_P_F6 171.09 147.66 1212500 1883300 0 2496800 893240 810670 604880 2704300 2815800 1999700 2126400 1128600 1759600 56156 2478600 846630 972420 697070 2632900 2743400 1982100 2072600 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1212500 1883300 0 2496800 893240 810670 604880 2704300 2815800 1999700 2126400 1128600 1759600 56156 2478600 846630 972420 697070 2632900 2743400 1982100 2072600 1 1 0 1 1 1 1 1 1 1 1 235620000 0 235620000 22316 2744 20519 116369;116370 141106;141107 141106 2 YSTDVSVDEVK Unmodified 1240.5823 0.58231244 463 P00367;P00367-3;P49448 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 0 0 0 0 By MS/MS 3 0 1 1 46.614 46.612 2 5.5796E-22 14612 20211116_3430_TMUAki_TMT10x_P_F3 218.6 179.83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22317 463 20520 116371 141108 141108 1 YSVDIPLDK Unmodified 1048.5441 0.54407645 1310 P61353 RPL27 60S ribosomal protein L27 yes yes 0 0 0 0 By MS/MS By MS/MS 4.4 1.02 2 4 2 2 5 5 59.326 59.342 2;3 4.3476E-06 18156 20211116_3431_TMUAki_TMT10x_P_F4 186.54 136.41 70111000 107200000 378390 146240000 140940000 136110000 79239000 96385000 107040000 82111000 101020000 65281000 100180000 6865500 146280000 133590000 138390000 84463000 99575000 107460000 80782000 97638000 10 10 5 10 10 10 10 10 10 10 10 47796000 72040000 164670 96111000 125700000 121730000 66178000 64154000 71224000 55370000 66221000 44502000 67311000 4937200 96732000 119020000 121130000 70395000 67871000 72060000 54439000 64036000 7 7 3 7 7 7 7 7 7 7 7 22315000 35161000 213710 50125000 15242000 14385000 13062000 32231000 35813000 26741000 34801000 20778000 32865000 1928300 49545000 14571000 17260000 14067000 31705000 35402000 26343000 33602000 3 3 2 3 3 3 3 3 3 3 3 10721000000 7051000000 3670200000 22318 1310 20521 116372;116373;116374;116375;116376;116377;116378;116379;116380;116381 141109;141110;141111;141112;141113;141114;141115;141116;141117;141118;141119;141120 141110 12 YSVIMLDEAHER Oxidation (M) 1477.6871 0.68712864 2814 Q9H5Z1;Q9H5Z1-2 DHX35 Probable ATP-dependent RNA helicase DHX35 yes no 0 0 1 0 By MS/MS 3 0 1 1 40.336 40.389 3 0.034688 12043 20211116_3430_TMUAki_TMT10x_P_F3 43.03 26.456 159110 246670 2702.7 305740 325290 333860 190420 166570 183220 153000 198510 148170 230390 18038 308160 308680 334630 199980 177400 187250 149980 191020 1 1 1 1 1 1 1 1 1 1 1 159110 246670 2702.7 305740 325290 333860 190420 166570 183220 153000 198510 148170 230390 18038 308160 308680 334630 199980 177400 187250 149980 191020 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8668600 8668600 0 22319 2814 20522 116382 141121 141121 2961 1 YSVLQQHAEANGVDGVDALDTASHTNK Unmodified 2839.3373 0.33727815 2579 Q99523;Q99523-2 SORT1 Sortilin yes no 0 0 0 0 By MS/MS 5 0 1 1 50.832 51.018 4 9.2483E-14 13943 20211116_3444_TMUAki_TMT10x_S_F5 120.93 106.16 1613600 3380800 15141 2829700 1689900 1931400 1389400 4127600 4009800 3194800 3055100 1502500 3152600 148960 2912200 1613700 2072300 1506200 4057900 3930800 3158600 2976700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1613600 3380800 15141 2829700 1689900 1931400 1389400 4127600 4009800 3194800 3055100 1502500 3152600 148960 2912200 1613700 2072300 1506200 4057900 3930800 3158600 2976700 1 1 1 1 1 1 1 1 1 1 1 141660000 0 141660000 22320 2579 20523 116383 141122 141122 1 YSVQLLTPANLLAK Unmodified 1529.8817 0.88172935 3225 Q9Y265 RUVBL1 RuvB-like 1 yes yes 0 0 0 0 By MS/MS By MS/MS 3.5 0.5 2 2 3 1 78.302 78.27 2;3 1.9099E-08 25974 20211116_3431_TMUAki_TMT10x_P_F4 106.42 65.834 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22321 3225 20524 116384;116385;116386;116387 141123;141124;141125;141126 141124 4 YSVQTADHR Unmodified 1075.5047 0.50467125 1859 Q16658 FSCN1 Fascin yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 26.779 26.514 3 0.0035196 7853 20211116_3441_TMUAki_TMT10x_S_F3 70.908 48.168 189880 295220 560.37 238660 224610 254860 231870 175510 203970 249940 221310 176800 275260 15927 247710 215530 256850 233950 184680 209340 241040 212960 2 2 1 2 2 2 2 2 2 2 2 85577 133680 560.37 97551 120020 144970 96424 74741 89441 107520 94059 79685 124600 8099.6 102780 114520 143180 98825 80517 91461 103660 90592 1 1 1 1 1 1 1 1 1 1 1 104310 161540 0 141110 104590 109900 135440 100760 114530 142410 127250 97112 150660 7827.4 144930 101010 113670 135130 104160 117880 137370 122360 1 1 0 1 1 1 1 1 1 1 1 7736300 763960 6972400 22322 1859 20525 116388;116389 141127;141128 141128 2 YSVTGPGADQPPTGIFIINPISGQLSVTKPLDREQIAR Unmodified 4035.1429 0.14292943 727 P19022;P19022-2 CDH2 Cadherin-2 yes no 0 0 0 2 By MS/MS By MS/MS 3 0 3 2 1 77.281 77.182 4;5 7.7858E-24 28128 20211116_3441_TMUAki_TMT10x_S_F3 129.25 125.33 5072200 8893500 107490 7067500 5745200 9439800 6243000 5450900 4746100 5257900 6546800 4723500 8291800 427020 7374400 5527800 9380700 6260200 5737700 4957700 5143100 6259800 3 3 2 3 3 3 3 3 3 3 3 4014100 7302700 80704 5921900 4236800 8321800 4641800 4550400 4098100 4261000 5453800 3738100 6809000 308020 6174700 4077500 8244900 4670400 4808200 4241100 4173500 5219100 2 2 1 2 2 2 2 2 2 2 2 1058100 1590800 26787 1145600 1508400 1118000 1601200 900570 647930 996920 1093100 985420 1482700 119000 1199700 1450300 1135700 1589800 929500 716670 969680 1040700 1 1 1 1 1 1 1 1 1 1 1 4207800000 1915200000 2292600000 22323 727 20526 116390;116391;116392 141129;141130;141131 141131 3 YTAAVPYR Unmodified 939.48142 0.48141661 3080 Q9UBM7 DHCR7 7-dehydrocholesterol reductase yes yes 0 0 0 0 By MS/MS 6.5 0.5 1 1 2 35.429 35.637 2 0.01724 7770 20211116_3434_TMUAki_TMT10x_P_F6 75.109 45.96 1384500 2163200 4078.7 2286300 4195000 3019700 1799300 1737200 1891300 1473700 2087000 1288900 2019000 128070 2334600 3960400 3002200 1953200 1823100 1927000 1450200 2007200 4 4 2 4 4 4 4 4 4 4 4 1384500 2163200 4078.7 2286300 4195000 3019700 1799300 1737200 1891300 1473700 2087000 1288900 2019000 128070 2334600 3960400 3002200 1953200 1823100 1927000 1450200 2007200 4 4 2 4 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13931000 13931000 0 22324 3080 20527 116393;116394 141132;141133;141134;141135 141133 4 YTASGCEVIAVNTR Unmodified 1539.7351 0.73514147 265 O60341;O60341-2 KDM1A Lysine-specific histone demethylase 1A yes no 0 0 0 0 By MS/MS By MS/MS 4.8 0.4 1 4 3 2 43.138 43.249 2;3 9.088E-24 10832 20211116_3444_TMUAki_TMT10x_S_F5 195.94 167.24 38187000 62611000 841590 52336000 44691000 46253000 55199000 23717000 22767000 26362000 43448000 35561000 58385000 4007600 54026000 43165000 46989000 54437000 25331000 25314000 25638000 41273000 4 4 2 4 4 4 4 4 4 4 4 15870000 25478000 188940 21447000 20564000 25908000 18617000 9714800 9825500 11611000 17292000 14778000 23759000 1533500 22231000 19678000 25754000 18713000 10751000 10645000 11262000 16450000 2 2 1 2 2 2 2 2 2 2 2 22316000 37134000 652650 30889000 24127000 20346000 36582000 14002000 12941000 14751000 26156000 20783000 34626000 2474200 31795000 23487000 21235000 35724000 14579000 14669000 14376000 24823000 2 2 1 2 2 2 2 2 2 2 2 988600000 657500000 331100000 22325 265 20528 116395;116396;116397;116398;116399 141136;141137;141138;141139 141139 4 YTCSFCGK Unmodified 1021.3997 0.39973717 1313 P61513;A6NKH3 RPL37A;RPL37AP8 60S ribosomal protein L37a;Putative 60S ribosomal protein L37a-like protein yes no 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 1 4 39.027 39.387 2 0.00048424 9480 20211116_3447_TMUAki_TMT10x_S_F8 173.68 149.52 1221600 2129000 1056 2019100 1362600 984720 1275000 1031100 999660 1008700 1636300 1137300 1986100 90966 2052100 1303500 1068000 1289400 1045300 1051600 986110 1558800 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1221600 2129000 1056 2019100 1362600 984720 1275000 1031100 999660 1008700 1636300 1137300 1986100 90966 2052100 1303500 1068000 1289400 1045300 1051600 986110 1558800 3 3 1 3 3 3 3 3 3 3 3 89977000 0 89977000 22326 1313 20529 116400;116401;116402;116403;116404 141140;141141;141142;141143;141144 141144 5 YTDQGGEEEEDYESEEQLQHR Unmodified 2570.0317 0.031713237 316 O75208;O75208-2 COQ9 Ubiquinone biosynthesis protein COQ9, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 37.759 37.716 3 1.2668E-102 11016 20211116_3439_TMUAki_TMT10x_S_F1 330.54 318.58 799370 1150900 1373.6 2340300 2678100 2841100 1503400 1559300 1921300 1022400 1439800 744280 1078400 90751 2311000 2538200 2834600 1599300 1634000 1919200 1020600 1403900 2 2 1 2 2 2 2 2 2 2 2 659730 941970 1373.6 1832000 2614300 2766600 1447400 1374500 1637100 906220 1205000 614290 882280 83351 1820000 2477400 2729400 1535100 1453700 1641900 904360 1175800 1 1 1 1 1 1 1 1 1 1 1 139640 208940 0 508350 63821 74541 55963 184760 284140 116150 234790 129990 196080 7399.3 490970 60794 105170 64241 180230 277330 116260 228020 1 1 0 1 1 1 1 1 1 1 1 282170000 199370000 82795000 22327 316 20530 116405;116406 141145;141146 141146 2 YTFAAHMDGTYK Oxidation (M) 1419.6129 0.61290107 1790 Q15363 TMED2 Transmembrane emp24 domain-containing protein 2 yes yes 0 0 1 0 By MS/MS By MS/MS 6.43 1.05 2 1 3 1 4 3 38.573 38.925 3 8.9715E-06 8777 20211116_3434_TMUAki_TMT10x_P_F6 101.89 83.577 2855800 4554900 26866 5423200 5350900 4645200 3239800 3021200 3061100 2688700 3530200 2659200 4253500 292050 5459600 5078900 4743700 3391100 3143700 3138700 2639600 3391000 6 6 3 6 6 6 6 6 6 6 6 1960800 3153900 19036 3644000 4471800 3965600 2419200 1929600 1900000 1691600 2268400 1825800 2944700 210890 3687700 4237100 3974300 2545200 2057500 1968700 1661900 2176800 4 4 2 4 4 4 4 4 4 4 4 894960 1401100 7830.1 1779200 879080 679570 820550 1091500 1161200 997100 1261900 833360 1308800 81159 1771900 841900 769380 845920 1086200 1169900 977710 1214200 2 2 1 2 2 2 2 2 2 2 2 377110000 273240000 103870000 22328 1790 20531 116407;116408;116409;116410;116411;116412;116413 141147;141148;141149;141150;141151;141152 141149 2404 6 YTFAAHMDGTYK Unmodified 1403.618 0.61798644 1790 Q15363 TMED2 Transmembrane emp24 domain-containing protein 2 yes yes 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 46.317 46.697 3 0.001946 12084 20211116_3434_TMUAki_TMT10x_P_F6 68.809 55.147 22198000 34220000 146520 43358000 33821000 32423000 24786000 20668000 20735000 18145000 25476000 20668000 31965000 2043200 43423000 32205000 33441000 25489000 21532000 21440000 17825000 24429000 5 5 3 5 5 5 5 5 5 5 5 12683000 20182000 66184 24750000 24807000 26258000 17070000 12653000 12882000 11202000 15190000 11809000 18849000 1186500 24949000 23589000 26351000 17590000 13508000 13370000 11001000 14582000 4 4 2 4 4 4 4 4 4 4 4 9514800 14038000 80337 18608000 9013900 6165100 7715700 8015000 7853400 6942700 10286000 8859900 13116000 856700 18475000 8615200 7089600 7898500 8023600 8069800 6824800 9847200 1 1 1 1 1 1 1 1 1 1 1 1360400000 851190000 509260000 22329 1790 20531 116414;116415;116416 141153;141154;141155;141156;141157 141154 5 YTGEDFDEDLR Unmodified 1358.5626 0.56263964 1695 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 49.525 49.525 2 5.7679E-11 13856 20211116_3428_TMUAki_TMT10x_P_F1 167.12 160.68 1632600 2569700 0 3487300 4736400 4521900 2380600 2470500 2809900 2064000 2556200 1520000 2401300 161660 3508300 4481100 4496700 2551200 2603200 2830800 2032500 2473800 1 1 0 1 1 1 1 1 1 1 1 1632600 2569700 0 3487300 4736400 4521900 2380600 2470500 2809900 2064000 2556200 1520000 2401300 161660 3508300 4481100 4496700 2551200 2603200 2830800 2032500 2473800 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 308430000 308430000 0 22330 1695 20532 116417;116418 141158;141159 141158 2 YTHAANTVVYSSNKIDDTIR Unmodified 2267.1182 0.11822424 2026 Q6UXN9 WDR82 WD repeat-containing protein 82 yes yes 0 0 0 1 By MS/MS 7 0 1 1 43.678 44.158 4 0.00011041 12968 20211116_3435_TMUAki_TMT10x_P_F7 71.853 62.447 2034000 3465300 5860.4 3532100 3868900 4721500 1340900 2582900 2602700 2379400 2526400 1893900 3233800 199790 3616400 3646500 4688500 1531400 2727900 2589800 2332300 2439500 1 1 1 1 1 1 1 1 1 1 1 2034000 3465300 5860.4 3532100 3868900 4721500 1340900 2582900 2602700 2379400 2526400 1893900 3233800 199790 3616400 3646500 4688500 1531400 2727900 2589800 2332300 2439500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 740340000 740340000 0 22331 2026 20533 116419 141160 141160 1 YTISQEAYDQR Unmodified 1372.6259 0.62590859 2570 Q99426;Q99426-2 TBCB Tubulin-folding cofactor B yes no 0 0 0 0 By MS/MS By MS/MS 4 0 3 1 2 37.581 37.739 2;3 2.0936E-16 9791 20211116_3442_TMUAki_TMT10x_S_F4 215.84 178.69 545210 917600 3187.7 1103500 492740 494960 652960 521950 696180 531760 861180 507640 856910 43786 1103500 476450 542370 655280 529620 712210 518940 825640 2 2 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 545210 917600 3187.7 1103500 492740 494960 652960 521950 696180 531760 861180 507640 856910 43786 1103500 476450 542370 655280 529620 712210 518940 825640 2 2 1 2 2 2 2 2 2 2 2 48244000 0 48244000 22332 2570 20534 116420;116421;116422 141161;141162;141163 141162 3 YTISQEAYDQRQDTVR Unmodified 1971.9286 0.92863256 2570 Q99426;Q99426-2 TBCB Tubulin-folding cofactor B yes no 0 0 0 1 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 36.976 36.869 3 2.0393E-35 11714 20211116_3441_TMUAki_TMT10x_S_F3 203.06 177.75 1571500 2608700 19942 3641400 4395600 4136700 2366100 3108200 3849800 2269500 2740200 1463400 2438000 185350 3649300 4164700 4160500 2552100 3187000 3812200 2251100 2677700 3 3 2 3 3 3 3 3 3 3 3 1195300 1988400 14957 2860100 4066800 3901300 2103200 2456100 3094600 1827900 2160700 1113000 1858600 150180 2871800 3850800 3877700 2266700 2551400 3071700 1811100 2113300 2 2 1 2 2 2 2 2 2 2 2 376240 620290 4985.4 781290 328780 235440 262970 652050 755170 441650 579450 350350 579400 35174 777510 313900 282880 285420 635640 740490 440010 564410 1 1 1 1 1 1 1 1 1 1 1 506920000 444590000 62331000 22333 2570 20535 116423;116424 141164;141165;141166 141166 3 YTLETRPNQEGIDVR Unmodified 1789.8959 0.89587586 675 P14735 IDE Insulin-degrading enzyme yes yes 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 39.563 39.537 3 1.8667E-07 10421 20211116_3431_TMUAki_TMT10x_P_F4 119.96 76.937 5459800 8465500 46278 10186000 7718600 7257500 6285800 5096500 5863200 4887300 6638000 5083700 7905700 501010 10226000 7366000 7525600 6437800 5284500 6010800 4781800 6379500 6 6 3 6 6 6 6 6 6 6 6 2002000 2844400 29741 3697500 4865800 4648200 2680200 1995800 2327600 2062000 2320000 1864300 2657300 233810 3726000 4612400 4617000 2822000 2165000 2383100 2011100 2238200 1 1 1 1 1 1 1 1 1 1 1 3457800 5621200 16537 6488500 2852700 2609300 3605600 3100700 3535600 2825300 4318000 3219500 5248400 267200 6500000 2753600 2908500 3615700 3119500 3627700 2770700 4141200 5 5 2 5 5 5 5 5 5 5 5 359270000 283680000 75587000 22334 675 20536 116425;116426;116427 141167;141168;141169;141170;141171;141172 141167 6 YTLFSASSEGQNHSR Unmodified 1682.7649 0.76486169 2287 Q8TEQ6 GEMIN5 Gem-associated protein 5 yes yes 0 0 0 0 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 36.491 36.794 3 5.8468E-10 8414 20211116_3434_TMUAki_TMT10x_P_F6 113.94 94.619 423530 643750 6216.9 765170 850850 609460 404490 365680 386520 323910 509420 394350 601140 41535 769700 804640 625000 433070 382860 398360 318070 487610 3 3 2 3 3 3 3 3 3 3 3 279730 399720 0 468900 706110 491570 278830 237270 248970 185480 310820 260410 373240 23805 473810 665960 493670 304250 252520 256790 183290 297920 1 1 0 1 1 1 1 1 1 1 1 143800 244040 6216.9 296270 144740 117890 125660 128410 137540 138430 198600 133940 227910 17729 295890 138680 131340 128830 130330 141570 134790 189690 2 2 2 2 2 2 2 2 2 2 2 26393000 23630000 2762600 22335 2287 20537 116428;116429;116430 141173;141174;141175;141176 141173 4 YTLHVVDSPTVKPSR Unmodified 1697.9101 0.91006937 2204 Q8N6R0;Q8N6R0-3;Q8N6R0-4 METTL13 Methyltransferase-like protein 13 yes no 0 0 0 1 By matching By MS/MS 1 0 2 1 1 39.759 39.69 4 1.0384E-06 11875 20211116_3439_TMUAki_TMT10x_S_F1 113.94 100.74 340130 530340 5399 670840 270220 283010 273400 457590 478940 429540 497490 316740 495390 32252 668650 259500 316160 283520 455600 478900 420670 479340 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 340130 530340 5399 670840 270220 283010 273400 457590 478940 429540 497490 316740 495390 32252 668650 259500 316160 283520 455600 478900 420670 479340 1 1 1 1 1 1 1 1 1 1 1 99387000 48634000 50753000 22336 2204 20538 116431;116432 141177 141177 1 YTLNVLEDLGDGQK Unmodified 1563.7781 0.77805214 658 P13797;P13797-3;P13797-2 PLS3 Plastin-3 yes no 0 0 0 0 By matching By MS/MS 3 0.816 1 1 1 1 2 76.803 76.71 3 0.0062124 25779 20211116_3442_TMUAki_TMT10x_S_F4 58.814 43.612 3091800 5852800 0 5295500 4802900 3929600 4252200 3871600 3749700 4065800 4283800 2878200 5459200 211260 5421300 4586900 4086200 4326400 3945100 3855700 3962900 4115900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3091800 5852800 0 5295500 4802900 3929600 4252200 3871600 3749700 4065800 4283800 2878200 5459200 211260 5421300 4586900 4086200 4326400 3945100 3855700 3962900 4115900 1 1 0 1 1 1 1 1 1 1 1 871260000 270650000 600610000 22337 658 20539 116433;116434;116435 141178 141178 1 YTPSGQAGAAASESLFVSNHAY Unmodified 2227.0182 0.018175845 482 P04075;P04075-2 ALDOA Fructose-bisphosphate aldolase A yes no 0 0 0 0 By MS/MS By MS/MS 6.27 1.71 1 2 2 3 3 5 6 59.753 59.98 2;3 2.2638E-55 19368 20211116_3435_TMUAki_TMT10x_P_F7 228.38 212.49 30049000 51343000 705340 50122000 38381000 57882000 35997000 51901000 51734000 47252000 46734000 27983000 47903000 3112100 51335000 36783000 58353000 37125000 52932000 51764000 46341000 45237000 14 14 11 14 14 14 14 14 14 14 14 15537000 25355000 438730 24458000 20372000 38799000 19944000 25922000 26744000 23429000 24311000 14470000 23656000 1750400 25229000 19548000 38352000 20463000 26931000 26823000 22985000 23528000 7 7 5 7 7 7 7 7 7 7 7 14511000 25987000 266610 25664000 18009000 19083000 16053000 25978000 24990000 23824000 22423000 13513000 24248000 1361700 26106000 17235000 20001000 16662000 26000000 24941000 23356000 21710000 7 7 6 7 7 7 7 7 7 7 7 13877000000 8018300000 5858700000 22338 482 20540 116436;116437;116438;116439;116440;116441;116442;116443;116444;116445;116446 141179;141180;141181;141182;141183;141184;141185;141186;141187;141188;141189;141190;141191;141192;141193 141184 15 YTPVQQGPVGVNVTYGGDPIPK Unmodified 2285.1692 0.16919718 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 6.75 0.433 2 6 4 4 64.364 64.761 2;3;4 1.6198E-55 21329 20211116_3435_TMUAki_TMT10x_P_F7 231.17 212.71 25230000 43208000 142010 41349000 31969000 40704000 31766000 28983000 28519000 29455000 33452000 23491000 40311000 1957200 42305000 30646000 41243000 32132000 30073000 29331000 28748000 32118000 9 9 3 9 9 9 9 9 9 9 9 12717000 21729000 25920 21469000 16477000 26873000 17467000 14261000 15042000 15016000 16769000 11840000 20275000 821690 22001000 15818000 26760000 17590000 15159000 15470000 14634000 16123000 5 5 1 5 5 5 5 5 5 5 5 12512000 21479000 116090 19880000 15492000 13831000 14300000 14722000 13478000 14439000 16684000 11651000 20036000 1135500 20303000 14828000 14483000 14542000 14915000 13861000 14114000 15995000 4 4 2 4 4 4 4 4 4 4 4 15090000000 8373300000 6716600000 22339 755 20541 116447;116448;116449;116450;116451;116452;116453;116454 141194;141195;141196;141197;141198;141199;141200;141201;141202 141196 9 YTQGGLENLELSR Unmodified 1478.7365 0.73652168 1749 Q15006 EMC2 ER membrane protein complex subunit 2 yes yes 0 0 0 0 By MS/MS 4 0 1 1 52.776 52.823 2 5.9182E-06 16026 20211116_3442_TMUAki_TMT10x_S_F4 110.9 91.11 1258400 2314000 22159 2492500 1246200 1240300 950490 1916800 2197100 1794700 1938100 1171900 2159900 124810 2511400 1188800 1356000 1018200 1911000 2171500 1757800 1877700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1258400 2314000 22159 2492500 1246200 1240300 950490 1916800 2197100 1794700 1938100 1171900 2159900 124810 2511400 1188800 1356000 1018200 1911000 2171500 1757800 1877700 1 1 1 1 1 1 1 1 1 1 1 140710000 0 140710000 22340 1749 20542 116455 141203 141203 1 YTQVGPDHNR Unmodified 1185.5527 0.55268407 1546 Q08211 DHX9 ATP-dependent RNA helicase A yes yes 0 0 0 0 By MS/MS By MS/MS 3.25 1.09 1 2 1 2 2 26.456 26.231 2;3 2.589E-07 7747 20211116_3441_TMUAki_TMT10x_S_F3 157.78 146.41 272060 415680 0 416690 284370 366760 315010 235230 250070 242540 340550 253270 387880 15706 424270 273090 373750 315910 246020 260450 236580 325710 5 5 0 5 5 5 5 5 5 5 5 149280 219850 0 236890 178830 257880 180670 159230 153450 158230 222270 138960 205200 6391.8 240780 171210 259200 182320 166850 159740 154580 212290 3 3 0 3 3 3 3 3 3 3 3 122770 195830 0 179800 105540 108880 134330 75997 96622 84311 118280 114310 182670 9314.4 183500 101880 114550 133590 79177 100710 82000 113430 2 2 0 2 2 2 2 2 2 2 2 34308000 3100900 31207000 22341 1546 20543 116456;116457;116458;116459 141204;141205;141206;141207;141208 141207 5 YTRPGLPTFSQEVLHK Unmodified 1871.9894 0.98938232 2517 Q96ME7;Q96ME7-2;Q96ME7-3 ZNF512 Zinc finger protein 512 yes no 0 0 0 1 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 51.603 51.426 4 3.322E-07 16169 20211116_3429_TMUAki_TMT10x_P_F2 106.82 86.393 12434000 20526000 274280 20695000 18141000 25491000 15759000 21192000 20071000 19342000 18554000 11578000 19154000 1316700 21172000 17348000 25576000 16243000 21708000 20177000 18967000 17946000 6 6 5 6 6 6 6 6 6 6 6 6951700 11488000 158340 12329000 12726000 19725000 10968000 12076000 11281000 11017000 10613000 6473900 10722000 804780 12629000 12168000 19467000 11227000 12633000 11439000 10804000 10259000 3 3 3 3 3 3 3 3 3 3 3 5481800 9038700 115940 8365900 5415200 5766300 4790900 9115400 8790700 8324800 7941200 5104600 8431600 511960 8543200 5180500 6109900 5016100 9075200 8737900 8163000 7686900 3 3 2 3 3 3 3 3 3 3 3 1106600000 765390000 341200000 22342 2517 20544 116460;116461;116462;116463 141209;141210;141211;141212;141213;141214 141210 6 YTRPTPVQK Unmodified 1088.5978 0.59784335 104 O00571;O00571-2;O15523;O15523-2;O15523-3 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 30.473 30.418 3 0.00034736 6163 20211116_3428_TMUAki_TMT10x_P_F1 115.82 80.997 1968800 3587700 3546 2971300 2542200 2807200 2346900 1571600 1779700 1676800 2385600 1833100 3345400 164840 3072300 2432300 2842100 2373200 1663400 1856900 1633300 2282500 3 3 1 3 3 3 3 3 3 3 3 1105000 1939400 3546 1591200 1453400 2039900 1261000 906930 1038600 941840 1320500 1028900 1808400 98218 1654600 1388900 2025000 1282300 980330 1076300 918410 1265200 2 2 1 2 2 2 2 2 2 2 2 863820 1648300 0 1380100 1088800 767250 1085800 664670 741130 734950 1065000 804230 1537000 66619 1417700 1043400 817120 1090900 683070 780550 714890 1017400 1 1 0 1 1 1 1 1 1 1 1 153720000 82345000 71379000 22343 104 20545 116464;116465;116466 141215;141216;141217 141215 3 YTTPEDATPEPGEDPR Unmodified 1773.7693 0.76933795 1393 P63092;Q5JWF2;P63092-4;Q5JWF2-2;P63092-3;P63092-2 GNAS Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas yes no 0 0 0 0 By MS/MS By MS/MS 1.67 0.667 4 4 1 4 5 37.395 37.317 2;3 2.4629E-42 10526 20211116_3429_TMUAki_TMT10x_P_F2 221.8 188.57 2232100 3763300 48682 5067600 7039100 4804000 3013600 4112400 5413400 2768000 4271400 2078600 3516500 276830 5073800 6650100 4894700 3341600 4175900 5361700 2758700 4155800 10 10 5 10 10 10 10 10 10 10 10 946590 1552000 26761 2495100 5693600 3719200 1748700 2011900 2931800 1235100 2099400 881460 1451700 156860 2497100 5360900 3675000 2016600 2108400 2901300 1238300 2050900 4 4 2 4 4 4 4 4 4 4 4 1285600 2211400 21921 2572500 1345500 1084800 1264900 2100500 2481600 1532900 2172100 1197100 2064800 119960 2576700 1289200 1219800 1324900 2067400 2460400 1520500 2104900 6 6 3 6 6 6 6 6 6 6 6 706690000 531030000 175650000 22344 1393 20546 116467;116468;116469;116470;116471;116472;116473;116474;116475 141218;141219;141220;141221;141222;141223;141224;141225;141226;141227 141221 10 YTVQDESHSEWVSCVR Unmodified 1980.8636 0.86358946 1405 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 4.12 1.45 1 2 2 2 1 3 5 43.827 43.93 3 2.6123E-55 14604 20211116_3441_TMUAki_TMT10x_S_F3 277 247.02 31934000 52206000 1170000 70303000 59328000 52117000 40221000 33858000 33361000 31216000 44983000 29742000 48782000 4103400 70171000 56476000 53804000 41585000 35267000 34652000 30596000 43034000 16 16 14 16 16 16 16 16 16 16 16 19287000 30554000 660950 42018000 48790000 43112000 31374000 18937000 18214000 17670000 26339000 17963000 28553000 2628200 42072000 46384000 43309000 32328000 20436000 19394000 17309000 25157000 8 8 8 8 8 8 8 8 8 8 8 12647000 21652000 509090 28285000 10538000 9004500 8846700 14921000 15147000 13546000 18645000 11779000 20228000 1475100 28099000 10092000 10495000 9257000 14831000 15258000 13286000 17877000 8 8 6 8 8 8 8 8 8 8 8 9262700000 5325000000 3937700000 22345 1405 20547 116476;116477;116478;116479;116480;116481;116482;116483 141228;141229;141230;141231;141232;141233;141234;141235;141236;141237;141238;141239;141240;141241;141242;141243 141239 16 YVAQAHDKPR Unmodified 1183.6098 0.60980502 1578 Q12931;Q12931-2 TRAP1 Heat shock protein 75 kDa, mitochondrial yes no 0 0 0 1 By MS/MS 5 0 1 1 26.945 26.871 4 0.00058649 5454 20211116_3433_TMUAki_TMT10x_P_F5 97.472 77.265 208820 355420 0 288000 234170 549670 214700 607100 614460 472790 375730 194410 331390 14828 302480 223860 545120 231180 610340 599140 467280 369840 1 1 0 1 1 1 1 1 1 1 1 208820 355420 0 288000 234170 549670 214700 607100 614460 472790 375730 194410 331390 14828 302480 223860 545120 231180 610340 599140 467280 369840 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13212000 13212000 0 22346 1578 20548 116484 141244 141244 1 YVASYLLAALGGNSSPSAK Unmodified 1867.968 0.96797818 507 P05387 RPLP2 60S acidic ribosomal protein P2 yes yes 0 0 0 0 By MS/MS By MS/MS 5.89 0.737 3 4 2 6 3 79.769 79.765 2;3;4 3.9955E-58 25649 20211116_3434_TMUAki_TMT10x_P_F6 251.24 214.86 142520000 219380000 1325400 201630000 95949000 175400000 141670000 72329000 104590000 104240000 124480000 132690000 204640000 10203000 206560000 93087000 177990000 140160000 79696000 108730000 100490000 119470000 6 6 3 6 6 6 6 6 6 6 6 77134000 128380000 1135000 113320000 64827000 119440000 72607000 41291000 62404000 66728000 74504000 71811000 119740000 5142000 116760000 62285000 119550000 72926000 46687000 64361000 64122000 71497000 4 4 2 4 4 4 4 4 4 4 4 65382000 91000000 190420 88315000 31121000 55956000 69063000 31038000 42183000 37515000 49976000 60878000 84903000 5060700 89802000 30802000 58440000 67237000 33009000 44367000 36372000 47969000 2 2 1 2 2 2 2 2 2 2 2 25624000000 14032000000 11592000000 22347 507 20549 116485;116486;116487;116488;116489;116490;116491;116492;116493 141245;141246;141247;141248;141249;141250;141251;141252;141253;141254 141250 10 YVATLGVEVHPLVFHTNR Unmodified 2051.0952 0.095244374 1368 P62826 RAN GTP-binding nuclear protein Ran yes yes 0 0 0 0 By MS/MS By MS/MS 4 2.57 4 5 4 2 1 3 4 13 10 56.091 56.037 2;3;4 4.8009E-180 17623 20211116_3435_TMUAki_TMT10x_P_F7 411.61 353.24 54363000 90154000 595010 83586000 67634000 101110000 68271000 76838000 70903000 74913000 72537000 50620000 84099000 3782000 85997000 64890000 101380000 69298000 79291000 72075000 73243000 69923000 26 26 14 26 26 26 26 26 26 26 26 31769000 53972000 331070 46094000 44831000 78137000 45655000 45337000 42296000 44929000 42466000 29582000 50333000 2201700 48059000 43021000 76887000 46163000 47739000 43182000 43897000 40960000 15 15 9 15 15 15 15 15 15 15 15 22594000 36182000 263940 37492000 22803000 22973000 22615000 31501000 28607000 29983000 30070000 21038000 33766000 1580300 37939000 21869000 24491000 23135000 31552000 28893000 29346000 28962000 11 11 5 11 11 11 11 11 11 11 11 54409000000 30278000000 24131000000 22348 1368 20550 116494;116495;116496;116497;116498;116499;116500;116501;116502;116503;116504;116505;116506;116507;116508;116509;116510;116511;116512;116513;116514;116515;116516 141255;141256;141257;141258;141259;141260;141261;141262;141263;141264;141265;141266;141267;141268;141269;141270;141271;141272;141273;141274;141275;141276;141277;141278;141279;141280;141281;141282;141283 141268 29 YVATLGVEVHPLVFHTNRGPIK Unmodified 2446.3485 0.34849895 1368 P62826 RAN GTP-binding nuclear protein Ran yes yes 0 0 0 1 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 54.994 54.912 5 1.9992E-26 16834 20211116_3442_TMUAki_TMT10x_S_F4 164.59 151.74 21722000 35801000 226380 33208000 45016000 27050000 18910000 32554000 28884000 26869000 31273000 20225000 33397000 1528100 33968000 42504000 28060000 20855000 32651000 29032000 26476000 30094000 5 5 1 5 5 5 5 5 5 5 5 6060800 7520900 226380 6832900 7262200 14055000 6568800 8746100 7556900 7321100 5915400 5644900 7015200 730290 7127300 6959600 13754000 6729800 9117700 7586400 7208900 5757200 1 1 1 1 1 1 1 1 1 1 1 15661000 28280000 0 26375000 37754000 12995000 12342000 23808000 21327000 19548000 25358000 14580000 26381000 797790 26841000 35545000 14307000 14126000 23533000 21446000 19267000 24337000 4 4 0 4 4 4 4 4 4 4 4 6015700000 2550600000 3465100000 22349 1368 20551 116517;116518;116519 141284;141285;141286;141287;141288 141288 5 YVDIAIPCNNK Unmodified 1305.6387 0.63872189 565 P08865 RPSA 40S ribosomal protein SA yes yes 0 0 0 0 By MS/MS By MS/MS 5.93 0.961 1 4 4 5 8 6 56.501 56.849 2;3 1.2841E-18 16621 20211116_3445_TMUAki_TMT10x_S_F6 224.24 202.78 40611000 61604000 350620 77441000 68087000 70715000 42665000 69359000 66744000 56038000 60842000 37813000 57542000 3836800 77784000 64651000 72424000 45351000 70189000 66638000 55279000 58874000 9 9 4 9 9 9 9 9 9 9 9 20812000 31140000 246160 38736000 52489000 55457000 29657000 37838000 35356000 29795000 30596000 19378000 29085000 2255600 39231000 49761000 55068000 31452000 39120000 35551000 29431000 29662000 5 5 3 5 5 5 5 5 5 5 5 19799000 30464000 104460 38705000 15598000 15258000 13008000 31521000 31388000 26243000 30246000 18435000 28457000 1581200 38553000 14891000 17356000 13899000 31069000 31087000 25848000 29212000 4 4 1 4 4 4 4 4 4 4 4 6829600000 3691200000 3138300000 22350 565 20552 116520;116521;116522;116523;116524;116525;116526;116527;116528;116529;116530;116531;116532;116533 141289;141290;141291;141292;141293;141294;141295;141296;141297;141298;141299;141300;141301;141302 141300 14 YVDTPFGKPSDALILGK Unmodified 1819.972 0.97200092 1596 Q13126;Q13126-7;Q13126-4;Q13126-6;Q13126-5;Q13126-3;Q13126-2 MTAP S-methyl-5'-thioadenosine phosphorylase yes no 0 0 0 1 By MS/MS By MS/MS 5 3.29 2 1 2 3 2 70.73 70.666 3 1.8074E-15 22376 20211116_3428_TMUAki_TMT10x_P_F1 150.59 130.49 44925000 74167000 259430 70917000 53094000 67702000 52952000 48939000 47114000 49364000 56560000 41831000 69194000 4005000 72528000 50917000 68747000 53538000 50717000 48521000 48194000 54269000 7 7 5 7 7 7 7 7 7 7 7 23451000 38080000 114380 37116000 26586000 45360000 29050000 25436000 24770000 26013000 28722000 21836000 35529000 2019000 38056000 25556000 45253000 29205000 26884000 25527000 25382000 27585000 4 4 2 4 4 4 4 4 4 4 4 21474000 36087000 145050 33801000 26508000 22343000 23902000 23503000 22344000 23351000 27837000 19995000 33665000 1986000 34473000 25361000 23494000 24333000 23833000 22994000 22812000 26684000 3 3 3 3 3 3 3 3 3 3 3 4254800000 2551000000 1703800000 22351 1596 20553 116534;116535;116536;116537;116538 141303;141304;141305;141306;141307;141308;141309;141310 141303 8 YVELFLNSTAGASGGAYEHR Unmodified 2141.0178 0.017781914 894 P31943 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 5.43 2.29 1 2 1 2 2 3 3 8 6 65.208 65.257 3 2.487E-51 20269 20211116_3436_TMUAki_TMT10x_P_F8 225.86 213.94 30895000 52972000 484100 52946000 37763000 50035000 37181000 38764000 36968000 38264000 41944000 28769000 49429000 2879400 53972000 36216000 50899000 37738000 39967000 37794000 37392000 40308000 19 19 12 19 19 19 19 19 19 19 19 16515000 26246000 31914 25859000 18406000 32555000 19767000 20017000 18565000 19848000 20994000 15377000 24489000 1199400 26508000 17677000 32470000 19942000 20980000 19025000 19392000 20177000 9 9 4 9 9 9 9 9 9 9 9 14380000 26726000 452190 27087000 19357000 17480000 17414000 18747000 18403000 18416000 20950000 13392000 24940000 1680000 27464000 18539000 18428000 17796000 18987000 18769000 18000000 20131000 10 10 8 10 10 10 10 10 10 10 10 18449000000 10272000000 8177700000 22352 894 20554 116539;116540;116541;116542;116543;116544;116545;116546;116547;116548;116549;116550;116551;116552 141311;141312;141313;141314;141315;141316;141317;141318;141319;141320;141321;141322;141323;141324;141325;141326;141327;141328;141329;141330;141331;141332 141320 22 YVENPSQVLNCER Unmodified 1606.741 0.74095513 354 O75694;O75694-2 NUP155 Nuclear pore complex protein Nup155 yes no 0 0 0 0 By MS/MS 4 0 1 1 48.008 48.156 2 6.4867E-25 13637 20211116_3431_TMUAki_TMT10x_P_F4 202.3 186.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22353 354 20555 116553 141333 141333 1 YVEPIEDVPCGNIVGLVGVDQFLVK Unmodified 2758.4252 0.42515387 653 P13639 EEF2 Elongation factor 2 yes yes 0 0 0 0 By MS/MS By MS/MS 4.93 1.96 1 2 4 6 4 4 3 4 14 14 81.148 81.144 2;3;4 1.7035E-48 26181 20211116_3434_TMUAki_TMT10x_P_F6 205.43 196.34 218280000 359730000 1593200 308150000 231360000 278010000 257770000 175220000 172870000 194840000 245870000 203240000 335470000 16221000 317550000 222510000 282770000 257460000 183930000 182170000 189480000 234930000 49 49 24 49 49 49 49 49 49 49 49 82666000 138520000 437370 119930000 73084000 143280000 88071000 72233000 69425000 77330000 95790000 76968000 129180000 5598700 124010000 70436000 142920000 87973000 77180000 72379000 75314000 91589000 23 23 10 23 23 23 23 23 23 23 23 135620000 221210000 1155800 188220000 158280000 134730000 169700000 102990000 103450000 117510000 150080000 126280000 206290000 10623000 193540000 152080000 139840000 169490000 106750000 109790000 114170000 143340000 26 26 14 26 26 26 26 26 26 26 26 83259000000 37282000000 45977000000 22354 653 20556 116554;116555;116556;116557;116558;116559;116560;116561;116562;116563;116564;116565;116566;116567;116568;116569;116570;116571;116572;116573;116574;116575;116576;116577;116578;116579;116580;116581 141334;141335;141336;141337;141338;141339;141340;141341;141342;141343;141344;141345;141346;141347;141348;141349;141350;141351;141352;141353;141354;141355;141356;141357;141358;141359;141360;141361;141362;141363;141364;141365;141366;141367;141368;141369;141370;141371;141372;141373;141374;141375;141376;141377;141378;141379;141380;141381;141382;141383 141350 50 YVEVSPATER Unmodified 1149.5666 0.5666028 2949 Q9NTZ6 RBM12 RNA-binding protein 12 yes yes 0 0 0 0 By MS/MS 2.5 0.5 1 1 2 34.66 34.753 2 1.2682E-07 11491 20211116_3441_TMUAki_TMT10x_S_F3 122.28 90.347 106260 217180 0 216640 124340 100500 132720 103660 128660 107700 160120 98922 202650 7567.6 219310 119340 109610 134060 105350 132180 105020 153490 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 106260 217180 0 216640 124340 100500 132720 103660 128660 107700 160120 98922 202650 7567.6 219310 119340 109610 134060 105350 132180 105020 153490 1 1 0 1 1 1 1 1 1 1 1 24266000 0 24266000 22355 2949 20557 116582;116583 141384;141385 141385 2 YVEVYEINNEDVDALMK Oxidation (M) 2058.9456 0.94558775 1569 Q12849;Q12849-5 GRSF1 G-rich sequence factor 1 yes no 0 0 1 0 By MS/MS 2.5 0.5 1 1 2 70.537 70.254 3 0.0042503 24389 20211116_3430_TMUAki_TMT10x_P_F3 60.631 50.573 2133800 3743700 22296 3176000 2246700 4447600 2467300 3491000 2569000 2700600 2873000 1987000 3491100 199270 3299200 2161100 4431000 2494300 3574000 2619800 2670100 2762100 1 1 1 1 1 1 1 1 1 1 1 2133800 3743700 22296 3176000 2246700 4447600 2467300 3491000 2569000 2700600 2873000 1987000 3491100 199270 3299200 2161100 4431000 2494300 3574000 2619800 2670100 2762100 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 945690000 945690000 0 22356 1569 20558 116584;116585 141386;141387 141387 2114 2 YVGSRPIK Unmodified 918.5287 0.52870115 2661 Q9BTD8;Q9BTD8-4;Q9BTD8-2;Q9BTD8-3 RBM42 RNA-binding protein 42 yes no 0 0 0 1 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 31.854 31.79 3 0.0063655 8206 20211116_3429_TMUAki_TMT10x_P_F2 80.438 60.661 2534800 4364100 8100.7 4514800 3752200 3776000 3092900 2222100 2704600 2273200 3589500 2360200 4072700 224960 4584100 3581100 3857400 3159700 2339200 2799800 2218000 3435300 5 5 2 5 5 5 5 5 5 5 5 1785000 3041100 6623.4 3029800 2798100 3043200 2050500 1566900 1875300 1598100 2468900 1662000 2837600 160020 3091900 2664100 3066200 2113600 1668600 1936600 1559500 2363300 3 3 1 3 3 3 3 3 3 3 3 749820 1323000 1477.3 1485000 954070 732810 1042400 655160 829220 675120 1120600 698150 1235100 64939 1492300 917020 791190 1046100 670640 863260 658540 1072000 2 2 1 2 2 2 2 2 2 2 2 96718000 76985000 19732000 22357 2661 20559 116586;116587;116588 141388;141389;141390;141391;141392 141390 5 YVGVSSDSVGGFR Unmodified 1328.6361 0.63607935 1721 Q14677;Q14677-2;Q14677-3 CLINT1 Clathrin interactor 1 yes no 0 0 0 0 By matching By MS/MS 5.33 0.471 2 1 1 2 48.418 48.59 2 5.7836E-12 13208 20211116_3445_TMUAki_TMT10x_S_F6 157.24 137.76 5781200 10575000 117550 13132000 4593900 4872600 3908600 9177500 10528000 7584600 9460000 5383600 9877500 564430 13093000 4394200 5570100 4205400 9066100 10383000 7473200 9158800 3 3 2 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5781200 10575000 117550 13132000 4593900 4872600 3908600 9177500 10528000 7584600 9460000 5383600 9877500 564430 13093000 4394200 5570100 4205400 9066100 10383000 7473200 9158800 3 3 2 3 3 3 3 3 3 3 3 512280000 129260000 383020000 22358 1721 20560 116589;116590;116591 141393;141394;141395 141395 3 YVHLFPK Unmodified 902.50142 0.50142377 352 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 0 0 0 0 By MS/MS By MS/MS 1.86 0.833 3 2 2 3 4 47.867 47.672 3 0.0045885 13011 20211116_3428_TMUAki_TMT10x_P_F1 91.26 56.452 5617300 9241700 49383 11200000 10579000 10890000 6914500 7762300 8586300 7622900 7740400 5230600 8630800 578110 11283000 10055000 11043000 7257000 8045800 8631900 7450700 7493000 4 4 3 4 4 4 4 4 4 4 4 3238300 5476800 48292 6568500 8749300 8704700 4577900 4630200 5106100 4379600 4325200 3015500 5114500 390670 6655800 8287200 8644400 4878000 4905800 5143800 4287700 4196500 2 2 2 2 2 2 2 2 2 2 2 2379000 3764900 1091 4631700 1830200 2185200 2336600 3132100 3480200 3243300 3415200 2215100 3516300 187440 4627300 1767500 2398400 2379000 3140000 3488100 3163000 3296500 2 2 1 2 2 2 2 2 2 2 2 983060000 602710000 380350000 22359 352 20561 116592;116593;116594;116595;116596;116597;116598 141396;141397;141398;141399;141400;141401 141396 6 YVIHTVGPIAYGEPSASQAAELR Unmodified 2428.2387 0.23867373 2625 Q9BQ69 MACROD1 O-acetyl-ADP-ribose deacetylase MACROD1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 56.432 56.878 3 6.5549E-28 16268 20211116_3434_TMUAki_TMT10x_P_F6 166.91 153.68 6173100 10297000 128270 10913000 7195800 10276000 7388300 7661700 7418700 7548300 8633300 5748300 9610700 600420 11080000 6909300 10449000 7485100 7918400 7589000 7376700 8290600 4 4 2 4 4 4 4 4 4 4 4 3301100 5042400 0 4891700 3847600 6665700 4152900 3974300 3919400 3525900 4171800 3073300 4704500 236100 5027500 3694000 6620700 4189200 4163200 4006500 3462100 4016500 2 2 0 2 2 2 2 2 2 2 2 2871900 5254800 128270 6021400 3348100 3610300 3235400 3687400 3499300 4022300 4461500 2675000 4906200 364320 6052600 3215300 3828400 3295900 3755200 3582500 3914600 4274100 2 2 2 2 2 2 2 2 2 2 2 2290600000 1700300000 590300000 22360 2625 20562 116599;116600;116601 141402;141403;141404;141405 141402 4 YVINAIPPTLTAK Unmodified 1399.8075 0.80750177 757 P21397;P21397-2 MAOA Amine oxidase [flavin-containing] A yes no 0 0 0 0 By MS/MS 2 0 3 3 68.086 67.776 2;3 3.3814E-06 22654 20211116_3429_TMUAki_TMT10x_P_F2 105.17 87.362 7627700 11868000 99970 11544000 8419300 14425000 8947200 8437100 7992900 7882900 10183000 7102400 11073000 673710 11843000 8088000 14383000 9018400 8863900 8250900 7721700 9755800 3 3 1 3 3 3 3 3 3 3 3 7627700 11868000 99970 11544000 8419300 14425000 8947200 8437100 7992900 7882900 10183000 7102400 11073000 673710 11843000 8088000 14383000 9018400 8863900 8250900 7721700 9755800 3 3 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 707580000 707580000 0 22361 757 20563 116602;116603;116604 141406;141407;141408;141409;141410 141406 5 YVIYIER Unmodified 954.51747 0.51746776 1306 P61254;Q9UNX3 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 0 0 0 0 By MS/MS By MS/MS 5.5 1.12 2 2 2 2 4 4 51.345 51.601 2 0.0017075 14448 20211116_3445_TMUAki_TMT10x_S_F6 150.02 104.94 125300000 190750000 377130 229620000 156910000 148600000 119050000 111360000 99251000 107410000 149790000 116660000 178130000 10205000 230300000 149460000 155550000 122120000 114980000 103630000 105070000 142930000 13 13 4 13 13 13 13 13 13 13 13 63542000 92516000 266960 107660000 97913000 108940000 69675000 57552000 51064000 53016000 77265000 59163000 86383000 5641000 108780000 93166000 109750000 71574000 60972000 53693000 51965000 73724000 8 8 3 8 8 8 8 8 8 8 8 61755000 98230000 110160 121960000 58998000 39667000 49372000 53805000 48186000 54395000 72521000 57496000 91747000 4564000 121510000 56294000 45804000 50546000 54010000 49936000 53100000 69205000 5 5 1 5 5 5 5 5 5 5 5 9145000000 4484000000 4661100000 22362 1306 20564 116605;116606;116607;116608;116609;116610;116611;116612 141411;141412;141413;141414;141415;141416;141417;141418;141419;141420;141421;141422;141423 141421 13 YVKPTEPVTDYR Unmodified 1466.7405 0.74054442 2755 Q9GZR2 REXO4 RNA exonuclease 4 yes yes 0 0 0 1 By MS/MS 6 0 3 3 38.633 38.639 3 2.8226E-05 8967 20211116_3434_TMUAki_TMT10x_P_F6 92.939 74.315 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22363 2755 20565 116613;116614;116615 141424;141425;141426 141426 3 YVLCTAPR Unmodified 978.49569 0.49568646 799 P25205;P25205-2 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 37.739 38.199 2 0.0015313 10786 20211116_3435_TMUAki_TMT10x_P_F7 120.65 90.46 1543700 2732200 9566.8 2749800 3674000 3230600 1838700 2699000 2554100 2057700 2697300 1437400 2549500 163450 2811200 3477000 3249600 1983100 2751800 2572100 2036100 2597600 4 4 3 4 4 4 4 4 4 4 4 937390 1634100 2899 1611800 3011200 2718600 1346300 1495900 1535600 1112500 1382200 872800 1524700 106180 1662500 2845400 2673800 1458500 1571200 1548400 1102300 1338100 2 2 1 2 2 2 2 2 2 2 2 606310 1098200 6667.8 1138000 662790 512060 492350 1203100 1018500 945170 1315100 564590 1024800 57273 1148700 631630 575790 524620 1180600 1023700 933730 1259400 2 2 2 2 2 2 2 2 2 2 2 91065000 53360000 37705000 22364 799 20566 116616;116617;116618;116619 141427;141428;141429;141430 141427 4 YVLEEAEQLEPR Unmodified 1474.7304 0.73037367 2218 Q8NAV1 PRPF38A Pre-mRNA-splicing factor 38A yes yes 0 0 0 0 By matching By MS/MS 1 0 2 1 1 65.33 65.211 3 1.4025E-10 22283 20211116_3439_TMUAki_TMT10x_S_F1 159.99 84.171 914220 1672700 71597 1669700 1069100 1272700 1182600 1186000 1079400 1321400 1275900 851770 1560800 144690 1697700 1032300 1319100 1190500 1214300 1109600 1284900 1224700 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 914220 1672700 71597 1669700 1069100 1272700 1182600 1186000 1079400 1321400 1275900 851770 1560800 144690 1697700 1032300 1319100 1190500 1214300 1109600 1284900 1224700 1 1 1 1 1 1 1 1 1 1 1 655640000 399700000 255940000 22365 2218 20567 116620;116621 141431 141431 1 YVLEEAQR Unmodified 1006.5084 0.50835964 2737 Q9BZF1;Q9BZF1-3;Q9BZF1-2 OSBPL8 Oxysterol-binding protein-related protein 8 yes no 0 0 0 0 By MS/MS 3 0 2 2 34.938 34.928 2 0.0083516 9857 20211116_3430_TMUAki_TMT10x_P_F3 86.794 42.347 50778 79511 403.15 91006 129620 109040 60127 45170 54747 43298 67414 47282 74235 5689.7 92299 122560 108530 64456 49093 56381 42364 64639 1 1 1 1 1 1 1 1 1 1 1 50778 79511 403.15 91006 129620 109040 60127 45170 54747 43298 67414 47282 74235 5689.7 92299 122560 108530 64456 49093 56381 42364 64639 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2144000 2144000 0 22366 2737 20568 116622;116623 141432;141433 141432 2 YVLENHPGTNSNYQMHLLKK Oxidation (M) 2401.1849 0.18486402 1930 Q5SSJ5;Q5SSJ5-2;Q5SSJ5-3 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 1 1 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 40.486 40.522 5 8.9026E-07 10170 20211116_3428_TMUAki_TMT10x_P_F1 90.718 76.557 1134900 1880000 21985 2027400 2514300 2614400 1514500 1985200 2185800 1612900 1807000 1056900 1754800 133900 2066600 2387000 2613000 1609200 2039000 2180900 1590600 1754900 2 2 2 2 2 2 2 2 2 2 2 755390 1152000 17017 1269800 2181800 2328900 1254800 1431100 1571600 1124600 1171000 703470 1075400 98463 1302900 2069700 2287000 1331100 1491100 1570800 1111000 1142100 1 1 1 1 1 1 1 1 1 1 1 379560 728020 4967.9 757550 332520 285490 259620 554120 614160 488280 635950 353440 679430 35439 763680 317300 325990 278130 547860 610060 479590 612810 1 1 1 1 1 1 1 1 1 1 1 244220000 215970000 28246000 22367 1930 20569 116624;116625 141434;141435 141434 2522 2 YVLGMQELFR Unmodified 1254.6431 0.64307898 2503 Q96J01;Q96J01-2 THOC3 THO complex subunit 3 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 3 2 1 76.017 75.937 2 0.00077218 24790 20211116_3440_TMUAki_TMT10x_S_F2 99.815 65.726 9257100 15562000 100270 14492000 10203000 11279000 10524000 6105400 6248600 6947900 10107000 8620100 14517000 874170 14812000 9797100 11572000 10526000 6493900 6680900 6751000 9630500 2 2 2 2 2 2 2 2 2 2 2 4833500 8010200 30934 7101400 4635700 7212300 4973100 3062500 3405800 3820200 5247800 4500700 7471000 426790 7310500 4455300 7247400 4978300 3345900 3598700 3699800 5005400 1 1 1 1 1 1 1 1 1 1 1 4423700 7551400 69333 7391100 5567200 4066700 5550700 3042900 2842800 3127800 4859300 4119400 7045700 447380 7501700 5341800 4325000 5547300 3148000 3082100 3051200 4625200 1 1 1 1 1 1 1 1 1 1 1 637660000 283060000 354610000 22368 2503 20570 116626;116627;116628 141436;141437;141438 141438 3 YVLGMQELFR Oxidation (M) 1270.638 0.63799361 2503 Q96J01;Q96J01-2 THOC3 THO complex subunit 3 yes no 0 0 1 0 By MS/MS 7 0 1 1 60.203 60.927 2 0.037623 19736 20211116_3435_TMUAki_TMT10x_P_F7 65.246 50.556 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22369 2503 20570 116629 141439 141439 2780 1 YVLINWVGEDVPDARK Unmodified 1872.9734 0.9733979 1858 Q16643;Q16643-3;Q16643-2 DBN1 Drebrin yes no 0 0 0 1 By MS/MS By MS/MS 6.64 0.881 1 4 4 2 6 5 70.61 70.712 3;4 1.229E-35 24309 20211116_3446_TMUAki_TMT10x_S_F7 209.89 183.77 80020000 133260000 1111200 133360000 91470000 94357000 89919000 51675000 44374000 56097000 84682000 74512000 124350000 7510900 135460000 87713000 97571000 89880000 54826000 48566000 54605000 80442000 15 15 10 15 15 15 15 15 15 15 15 36912000 60818000 176850 61018000 40629000 58914000 44340000 25977000 22676000 27937000 39319000 34368000 56751000 3011200 62203000 39044000 59407000 44111000 28133000 24607000 27204000 37415000 8 8 4 8 8 8 8 8 8 8 8 43108000 72442000 934380 72338000 50841000 35444000 45579000 25697000 21698000 28159000 45362000 40144000 67596000 4499600 73253000 48670000 38164000 45769000 26693000 23959000 27401000 43027000 7 7 6 7 7 7 7 7 7 7 7 10593000000 6052800000 4540600000 22370 1858 20571 116630;116631;116632;116633;116634;116635;116636;116637;116638;116639;116640 141440;141441;141442;141443;141444;141445;141446;141447;141448;141449;141450;141451;141452;141453;141454 141449 15 YVLKPATEGK Unmodified 1104.6179 0.61791009 2973 Q9NVI7;Q9NVI7-2;Q9NVI7-3 ATAD3A ATPase family AAA domain-containing protein 3A yes no 0 0 0 1 By MS/MS 8 0 1 1 39.992 40.226 3 0.00025793 9601 20211116_3447_TMUAki_TMT10x_S_F8 107.18 77.877 1168800 1974700 2662.8 1872200 1192700 1028400 1341700 1271300 1538700 1244000 1614900 1088300 1842300 99718 1904600 1147500 1105200 1359200 1279500 1559400 1216100 1555500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1168800 1974700 2662.8 1872200 1192700 1028400 1341700 1271300 1538700 1244000 1614900 1088300 1842300 99718 1904600 1147500 1105200 1359200 1279500 1559400 1216100 1555500 1 1 1 1 1 1 1 1 1 1 1 59851000 0 59851000 22371 2973 20572 116641 141455 141455 1 YVLVAGITPTPLGEGK Unmodified 1613.9029 0.90285872 2018 Q6UB35 MTHFD1L Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 73.216 73.174 3 2.3127E-06 25458 20211116_3439_TMUAki_TMT10x_S_F1 90.367 69.703 18376000 31040000 231600 28101000 19223000 33389000 21883000 21036000 18046000 19344000 24420000 17111000 28953000 1749200 28955000 18512000 33411000 21939000 21961000 18753000 18962000 23360000 5 5 4 5 5 5 5 5 5 5 5 15475000 25751000 177840 23495000 15604000 30170000 18352000 17938000 15255000 15770000 20428000 14410000 24020000 1448500 24228000 15041000 30049000 18375000 18791000 15839000 15491000 19546000 4 4 3 4 4 4 4 4 4 4 4 2901000 5289300 53754 4606200 3619000 3218500 3530900 3098100 2791200 3574100 3991400 2701500 4932900 300670 4726600 3471100 3361700 3563200 3170300 2914500 3471100 3813200 1 1 1 1 1 1 1 1 1 1 1 1247800000 1030600000 217180000 22372 2018 20573 116642;116643;116644;116645 141456;141457;141458;141459;141460;141461 141460 6 YVMTTTTLER Oxidation (M) 1229.5962 0.59618837 504 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 0 0 1 0 By MS/MS By MS/MS 4.43 1.4 1 1 1 2 2 4 3 36.612 36.59 2 1.2144E-05 9338 20211116_3433_TMUAki_TMT10x_P_F5 140.35 103.59 3872800 5783000 1301.5 6750700 7887700 7107900 4272700 3900300 4727900 3923400 5209800 3605200 5399800 283770 6823800 7466200 7147000 4537100 4128100 4807100 3830900 5010700 7 7 1 7 7 7 7 7 7 7 7 3077100 4506900 0 5302900 7228100 6415400 3527900 3053600 3743900 3062200 4102000 2864300 4208400 222940 5370300 6831800 6391400 3778700 3274600 3812100 2990300 3945900 4 4 0 4 4 4 4 4 4 4 4 795750 1276200 1301.5 1447800 659610 692520 744800 846670 984000 861250 1107800 740900 1191400 60827 1453600 634400 755550 758430 853490 994980 840540 1064800 3 3 1 3 3 3 3 3 3 3 3 321860000 231230000 90635000 22373 504 20574 116646;116647;116648;116649;116650;116651;116652 141462;141463;141464;141465;141466;141467;141468 141463 408 7 YVMTTTTLER Unmodified 1213.6013 0.60127375 504 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 0 0 0 0 By MS/MS By matching 5.33 0.471 2 1 2 1 44.591 44.725 2 3.5408E-06 12558 20211116_3433_TMUAki_TMT10x_P_F5 146.23 125.95 1915000 3031600 23160 3979500 4826100 4177300 2833900 2045000 1994000 1865900 2690100 1783200 2832300 221120 3995800 4578800 4195400 2952700 2181500 2090000 1829700 2573500 1 1 1 1 1 1 1 1 1 1 1 1915000 3031600 23160 3979500 4826100 4177300 2833900 2045000 1994000 1865900 2690100 1783200 2832300 221120 3995800 4578800 4195400 2952700 2181500 2090000 1829700 2573500 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 292830000 128150000 164680000 22374 504 20574 116653;116654;116655 141469;141470 141469 2 YVPLADVK Unmodified 903.50657 0.50656873 1007 P42167;P42167-2 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes no 0 0 0 0 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 53.332 53.481 2 0.0014326 15208 20211116_3445_TMUAki_TMT10x_S_F6 121.99 63.008 28983000 48193000 687580 51262000 53180000 57650000 37232000 44570000 45215000 40627000 45476000 26991000 44980000 3382600 52175000 50632000 58042000 38847000 45858000 45658000 39841000 43861000 5 5 5 5 5 5 5 5 5 5 5 17929000 29458000 409920 31902000 41674000 46779000 27015000 27867000 28287000 25796000 28078000 16696000 27496000 2201000 32595000 39615000 46313000 28208000 29226000 28714000 25279000 27093000 3 3 3 3 3 3 3 3 3 3 3 11055000 18735000 277670 19360000 11506000 10871000 10218000 16703000 16928000 14830000 17397000 10295000 17484000 1181600 19580000 11017000 11729000 10639000 16632000 16944000 14561000 16768000 2 2 2 2 2 2 2 2 2 2 2 1625800000 851530000 774310000 22375 1007 20575 116656;116657;116658;116659 141471;141472;141473;141474;141475 141475 5 YVPPSLR Unmodified 830.46504 0.46503826 359 O75821 EIF3G Eukaryotic translation initiation factor 3 subunit G yes yes 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 4 2 2 4 37.577 38.036 2 0.0028979 10193 20211116_3446_TMUAki_TMT10x_S_F7 121.14 92.566 6952100 10954000 44230 10592000 10751000 10616000 7815500 6448500 7081400 6335700 8831700 6473000 10220000 615480 10832000 10234000 10720000 8058400 6763300 7298300 6192400 8465400 9 9 5 9 9 9 9 9 9 9 9 4641000 7086600 30980 6781000 8330000 8504700 5208100 4321200 4694000 4202300 5798100 4321000 6611400 415840 6965100 7907400 8463600 5430200 4601100 4837000 4109100 5559100 3 3 2 3 3 3 3 3 3 3 3 2311100 3867300 13249 3811400 2421100 2111800 2607400 2127200 2387400 2133400 3033500 2151900 3608400 199640 3866800 2326500 2256600 2628200 2162200 2461300 2083400 2906300 6 6 3 6 6 6 6 6 6 6 6 232740000 124560000 108180000 22376 359 20576 116660;116661;116662;116663;116664;116665 141476;141477;141478;141479;141480;141481;141482;141483;141484;141485;141486 141482 11 YVPVKGDHVIGIVTAK Unmodified 1694.9719 0.97194134 2909 Q9NQT5-2;Q9NQT5 EXOSC3 Exosome complex component RRP40 yes no 0 0 0 1 By MS/MS By MS/MS 2 0 2 1 1 52.076 51.865 4 6.9013E-06 16375 20211116_3429_TMUAki_TMT10x_P_F2 100.23 80.389 3528400 5674800 89032 5873400 5519700 6426900 3626400 5344900 4827300 4380900 4504200 3286000 5295900 403390 5986100 5250300 6488800 3814600 5460100 4846900 4318300 4355100 2 2 2 2 2 2 2 2 2 2 2 2306400 3511900 57696 3618300 4289300 5252800 2541100 3327600 3093000 2924100 2721000 2147900 3277400 272760 3708200 4072300 5207200 2686000 3468400 3109300 2872500 2636300 1 1 1 1 1 1 1 1 1 1 1 1222000 2162900 31336 2255100 1230400 1174000 1085300 2017300 1734300 1456700 1783300 1138100 2018600 130640 2277900 1178000 1281700 1128600 1991700 1737700 1445800 1718700 1 1 1 1 1 1 1 1 1 1 1 756130000 538680000 217450000 22377 2909 20577 116666;116667 141487;141488 141487 2 YVQELAAVR Unmodified 1047.5713 0.57129425 1741 Q14980;Q14980-2;Q14980-4;Q14980-3 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 0 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 47.404 47.576 2 0.0091406 12572 20211116_3444_TMUAki_TMT10x_S_F5 71.451 46.819 13698000 23173000 168900 26923000 16637000 16149000 11064000 18708000 21153000 16924000 20808000 12755000 21636000 1334200 27040000 15823000 17174000 11827000 18838000 21066000 16602000 20084000 3 3 3 3 3 3 3 3 3 3 3 3327300 4917500 49053 5458100 7346600 8291900 4486700 4347700 4847100 3866600 4592500 3098400 4590600 377860 5572400 6975300 8183800 4711700 4605100 4906300 3796100 4438100 1 1 1 1 1 1 1 1 1 1 1 10370000 18255000 119840 21465000 9290800 7857400 6577700 14360000 16306000 13057000 16216000 9656700 17046000 956350 21467000 8847500 8990000 7115100 14233000 16160000 12806000 15646000 2 2 2 2 2 2 2 2 2 2 2 474690000 334720000 139980000 22378 1741 20578 116668;116669;116670 141489;141490;141491;141492 141492 4 YVQLPADEVDTQLLQDAAR Unmodified 2144.075 0.074962442 3260 Q9Y333 LSM2 U6 snRNA-associated Sm-like protein LSm2 yes yes 0 0 0 0 By MS/MS By MS/MS 2.82 0.936 1 3 4 3 7 4 75.969 75.897 2;3 2.5672E-90 24984 20211116_3431_TMUAki_TMT10x_P_F4 323.24 311.78 29500000 46886000 146270 39923000 33675000 53061000 36215000 37197000 35007000 35131000 38317000 27467000 43724000 2085000 41416000 32344000 52888000 36564000 38558000 35784000 34396000 36861000 15 15 6 15 15 15 15 15 15 15 15 21487000 34951000 111730 29945000 22324000 41839000 26433000 25164000 23618000 24266000 26850000 20005000 32594000 1377000 31080000 21500000 41514000 26510000 26400000 24265000 23737000 25801000 11 11 5 11 11 11 11 11 11 11 11 8013600 11936000 34538 9978000 11351000 11223000 9781800 12033000 11389000 10865000 11467000 7461400 11130000 708000 10336000 10844000 11374000 10054000 12159000 11519000 10659000 11059000 4 4 1 4 4 4 4 4 4 4 4 7574000000 5301000000 2272900000 22379 3260 20579 116671;116672;116673;116674;116675;116676;116677;116678;116679;116680;116681 141493;141494;141495;141496;141497;141498;141499;141500;141501;141502;141503;141504;141505;141506;141507;141508 141503 16 YVQLPADEVDTQLLQDAARK Unmodified 2272.1699 0.16992546 3260 Q9Y333 LSM2 U6 snRNA-associated Sm-like protein LSm2 yes yes 0 0 0 1 By MS/MS By MS/MS 4.78 0.916 1 2 4 2 5 4 71.036 71.029 3;4 8.8791E-59 22986 20211116_3431_TMUAki_TMT10x_P_F4 247.36 228.29 25003000 40551000 217710 41302000 27316000 41864000 28049000 25872000 23587000 25995000 30047000 23281000 37842000 2160000 42090000 26214000 42255000 28275000 27116000 24420000 25383000 28786000 9 9 6 9 9 9 9 9 9 9 9 20712000 32944000 153540 33682000 21375000 37373000 23109000 21408000 19545000 21277000 24597000 19285000 30743000 1721300 34365000 20538000 37486000 23240000 22568000 20219000 20786000 23572000 7 7 4 7 7 7 7 7 7 7 7 4291200 7607400 64173 7619500 5941500 4491800 4939900 4464600 4042100 4717900 5450100 3996000 7098600 438690 7725500 5675700 4768200 5035300 4548200 4201400 4597300 5213900 2 2 2 2 2 2 2 2 2 2 2 4201200000 2739400000 1461800000 22380 3260 20580 116682;116683;116684;116685;116686;116687;116688;116689;116690 141509;141510;141511;141512;141513;141514;141515;141516;141517;141518 141509 10 YVSAQPLAGR Unmodified 1060.5665 0.56654322 2650 Q9BSJ2;Q9BSJ2-4;Q9BSJ2-3 TUBGCP2 Gamma-tubulin complex component 2 yes no 0 0 0 0 By MS/MS 7 0 1 1 36.211 36.649 2 0.00039162 10017 20211116_3435_TMUAki_TMT10x_P_F7 110.79 83.164 143150 257170 11645 275890 307110 302390 182640 155050 165870 144600 200090 133370 240040 25017 280530 292040 303110 191250 164770 170690 141660 191960 1 1 1 1 1 1 1 1 1 1 1 143150 257170 11645 275890 307110 302390 182640 155050 165870 144600 200090 133370 240040 25017 280530 292040 303110 191250 164770 170690 141660 191960 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10120000 10120000 0 22381 2650 20581 116691 141519 141519 1 YVSSLTEEISKR Unmodified 1410.7355 0.73545904 1090 P49257 LMAN1 Protein ERGIC-53 yes yes 0 0 0 1 By MS/MS 6 0 1 1 50.011 50.161 3 7.7116E-08 13868 20211116_3445_TMUAki_TMT10x_S_F6 108.5 92.909 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22382 1090 20582 116692 141520 141520 1 YVVGLIIK Unmodified 903.57934 0.57933974 153 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 3 0 2 1 1 70.132 69.776 2 0.0027937 24157 20211116_3430_TMUAki_TMT10x_P_F3 105.22 63.565 33906000 56015000 608320 45860000 38579000 54610000 35367000 45170000 38359000 50001000 46223000 31573000 52230000 3244700 47633000 36935000 54881000 36135000 46546000 39172000 48635000 44346000 2 2 1 2 2 2 2 2 2 2 2 11233000 16934000 0 16021000 11714000 26912000 13329000 15149000 13070000 16338000 15705000 10458000 15797000 739340 16572000 11260000 26480000 13428000 16032000 13401000 15908000 15068000 1 1 0 1 1 1 1 1 1 1 1 22673000 39082000 608320 29839000 26865000 27699000 22038000 30020000 25289000 33663000 30518000 21115000 36433000 2505400 31061000 25675000 28402000 22707000 30514000 25771000 32727000 29278000 1 1 1 1 1 1 1 1 1 1 1 1227500000 541840000 685680000 22383 153 20583 116693;116694 141521;141522 141521 2 YVVLCESPQDKR Unmodified 1492.7344 0.73441319 2269 Q8TC07-2;Q8TC07;Q8TC07-3 TBC1D15 TBC1 domain family member 15 yes no 0 0 0 1 By MS/MS 5.5 0.5 1 1 2 40.415 40.579 3 6.2808E-06 10050 20211116_3445_TMUAki_TMT10x_S_F6 109 79.309 432610 738120 8834.2 907670 410240 366400 392420 540760 550990 421340 675830 402870 689370 43787 905900 393450 410570 403890 537430 558020 416420 648080 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 432610 738120 8834.2 907670 410240 366400 392420 540760 550990 421340 675830 402870 689370 43787 905900 393450 410570 403890 537430 558020 416420 648080 1 1 1 1 1 1 1 1 1 1 1 47089000 0 47089000 22384 2269 20584 116695;116696 141523;141524 141524 2 YVVQITPAFK Unmodified 1164.6543 0.6542956 1626 Q13394;Q9Y586 MAB21L1;MAB21L2 Protein mab-21-like 1;Protein mab-21-like 2 yes no 0 0 0 0 By MS/MS By MS/MS 2 0 5 2 3 64.513 64.216 2;3 8.1922E-10 20147 20211116_3440_TMUAki_TMT10x_S_F2 165.83 120.52 5642600 8311900 0 8137100 6221100 9580700 6751400 5802000 5133900 5286900 6429300 5253200 7755300 400560 8335100 5973500 9586200 6770500 6074400 5339600 5184700 6162000 1 1 0 1 1 1 1 1 1 1 1 5642600 8311900 0 8137100 6221100 9580700 6751400 5802000 5133900 5286900 6429300 5253200 7755300 400560 8335100 5973500 9586200 6770500 6074400 5339600 5184700 6162000 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 541280000 541280000 0 22385 1626 20585 116697;116698;116699;116700;116701 141525;141526;141527;141528;141529 141528 5 YVVVTGITPTPLGEGK Unmodified 1629.8978 0.89777334 629 P11586 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 7.5 0.5 4 4 4 4 67.331 67.563 2;3 2.2352E-42 23057 20211116_3446_TMUAki_TMT10x_S_F7 223.31 203.55 139120000 229330000 442120 227080000 163840000 180430000 165750000 115860000 109350000 121720000 163360000 129510000 213980000 9387500 231120000 156990000 185240000 166280000 121240000 115630000 118630000 155920000 13 13 4 13 13 13 13 13 13 13 13 63397000 97557000 0 102840000 68323000 116300000 81716000 51820000 47859000 53272000 69646000 59011000 91051000 3102800 104740000 65704000 116200000 81140000 55985000 50943000 51968000 66510000 5 5 0 5 5 5 5 5 5 5 5 75721000 131770000 442120 124240000 95518000 64129000 84032000 64045000 61490000 68443000 93717000 70501000 122930000 6284800 126380000 91281000 69036000 85140000 65253000 64685000 66664000 89408000 8 8 4 8 8 8 8 8 8 8 8 12696000000 7982100000 4713900000 22386 629 20586 116702;116703;116704;116705;116706;116707;116708;116709 141530;141531;141532;141533;141534;141535;141536;141537;141538;141539;141540;141541;141542 141536 13 YVWLVYEQDRPLK Unmodified 1707.8984 0.89844205 867 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 66.841 66.8 3 1.2227E-22 20863 20211116_3428_TMUAki_TMT10x_P_F1 202.32 188.29 47954000 74783000 872990 83175000 51179000 66942000 56114000 33823000 28606000 36084000 51353000 44656000 69812000 4834500 84017000 49250000 68453000 55809000 36128000 31113000 35148000 48834000 6 6 6 6 6 6 6 6 6 6 6 32907000 50471000 615480 56329000 36112000 54608000 39620000 22634000 19341000 24418000 34046000 30645000 47117000 3346700 57025000 34752000 55019000 39377000 24679000 21086000 23774000 32387000 4 4 4 4 4 4 4 4 4 4 4 15046000 24312000 257520 26846000 15067000 12334000 16494000 11189000 9264600 11666000 17308000 14012000 22695000 1487700 26992000 14498000 13434000 16432000 11449000 10027000 11374000 16447000 2 2 2 2 2 2 2 2 2 2 2 2696300000 1426000000 1270300000 22387 867 20587 116710;116711;116712;116713 141543;141544;141545;141546;141547;141548 141543 6 YVWLVYEQDRPLKCDEPILSNR Unmodified 2792.3956 0.39558507 867 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 0 0 0 2 By MS/MS By MS/MS 6.14 2.23 1 2 2 2 3 4 67.88 67.959 4 3.1191E-76 21389 20211116_3436_TMUAki_TMT10x_P_F8 269.83 253.51 91880000 155820000 1173600 132010000 109800000 109920000 116840000 49286000 41086000 62334000 96309000 85558000 145310000 8893600 136030000 105530000 111980000 115810000 53561000 47073000 60341000 91196000 10 10 8 10 10 10 10 10 10 10 10 30814000 50374000 322300 43918000 35830000 53529000 42268000 17676000 15365000 21263000 31201000 28693000 46980000 2916100 45404000 34536000 53133000 41705000 19888000 17371000 20619000 29608000 3 3 2 3 3 3 3 3 3 3 3 61066000 105440000 851290 88096000 73975000 56392000 74576000 31610000 25721000 41071000 65108000 56865000 98325000 5977500 90623000 70994000 58847000 74102000 33673000 29702000 39722000 61588000 7 7 6 7 7 7 7 7 7 7 7 16980000000 8712600000 8267600000 22388 867 20588 116714;116715;116716;116717;116718;116719;116720 141549;141550;141551;141552;141553;141554;141555;141556;141557 141550 9 YWEAFLPEAK Unmodified 1252.6128 0.61282471 286;1651 O60749;O60749-2;Q13596;Q13596-2 SNX2;SNX1 Sorting nexin-2;Sorting nexin-1 no no 0 0 0 0 By MS/MS 7 0 1 1 77.781 77.844 2 0.024171 27352 20211116_3446_TMUAki_TMT10x_S_F7 65.347 45.018 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22389 286;1651 20589 116721 141558 141558 1 YWLCAATGPSIK Unmodified 1365.6751 0.67510739 1405 P63244 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 0 0 0 0 By MS/MS By MS/MS 3.61 0.951 3 4 8 3 13 5 62.18 62.06 2;3 1.7348E-19 22510 20211116_3430_TMUAki_TMT10x_P_F3 229.17 197.23 74445000 123800000 458200 134730000 78670000 73711000 75911000 37849000 29053000 44712000 77940000 69317000 115560000 6320900 135770000 75369000 78050000 75694000 40498000 33342000 43385000 73672000 20 20 14 20 20 20 20 20 20 20 20 28088000 44735000 196540 49279000 40098000 44404000 39768000 14670000 10787000 17080000 28644000 26153000 41759000 2558600 49879000 38444000 44868000 39458000 16488000 12876000 16582000 27079000 12 12 10 12 12 12 12 12 12 12 12 46358000 79063000 261660 85455000 38572000 29307000 36144000 23180000 18266000 27631000 49296000 43164000 73798000 3762400 85887000 36925000 33182000 36236000 24010000 20466000 26803000 46593000 8 8 4 8 8 8 8 8 8 8 8 8599500000 4756800000 3842700000 22390 1405 20590 116722;116723;116724;116725;116726;116727;116728;116729;116730;116731;116732;116733;116734;116735;116736;116737;116738;116739 141559;141560;141561;141562;141563;141564;141565;141566;141567;141568;141569;141570;141571;141572;141573;141574;141575;141576;141577;141578;141579 141562 21 YWLFSDEVPGLFIEK Unmodified 1841.924 0.9239881 3135 Q9UIG0;Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B yes no 0 0 0 0 By MS/MS By MS/MS 7.2 0.748 1 2 2 2 3 81.612 81.623 3 5.4144E-05 28512 20211116_3435_TMUAki_TMT10x_P_F7 89.648 71.284 3609000 5857500 60799 5806400 3971000 5343400 4397200 3113200 3122700 3333300 4240500 3360700 5465400 352170 5920200 3821400 5421900 4398500 3284400 3272300 3246400 4056100 4 4 2 4 4 4 4 4 4 4 4 1782900 2936200 60799 2928200 1861100 3201500 2153500 1593000 1544700 1630600 2040600 1660500 2739800 205570 2991900 1795600 3208500 2150300 1702000 1615800 1591000 1953200 2 2 2 2 2 2 2 2 2 2 2 1826100 2921200 0 2878200 2109900 2141900 2243700 1520200 1578000 1702700 2199900 1700200 2725700 146600 2928200 2025900 2213400 2248200 1582500 1656500 1655500 2102900 2 2 0 2 2 2 2 2 2 2 2 478280000 264000000 214280000 22391 3135 20591 116740;116741;116742;116743;116744 141580;141581;141582;141583 141580 4 YWPQEAGEYAVHVLCNSEDIR Unmodified 2535.1489 0.14887244 755 P21333;P21333-2 FLNA Filamin-A yes no 0 0 0 0 By MS/MS By MS/MS 4.88 1.69 1 1 1 2 1 2 4 4 77.013 77.03 3 2.3324E-10 26997 20211116_3446_TMUAki_TMT10x_S_F7 111.13 97.862 18654000 31307000 254140 28024000 20734000 31137000 23266000 19868000 18433000 21002000 23487000 17369000 29200000 1565200 28867000 19944000 31275000 23317000 20803000 19144000 20465000 22500000 6 6 4 6 6 6 6 6 6 6 6 12398000 20441000 216510 19312000 13078000 23462000 14888000 13833000 12071000 13900000 15911000 11544000 19069000 1098500 19843000 12589000 23429000 14920000 14552000 12539000 13572000 15230000 4 4 3 4 4 4 4 4 4 4 4 6256300 10866000 37635 8711200 7657000 7675100 8377300 6035200 6362900 7101900 7575700 5824600 10131000 466750 9023600 7355300 7845900 8397400 6250800 6604400 6892200 7270500 2 2 1 2 2 2 2 2 2 2 2 4785200000 2737600000 2047600000 22392 755 20592 116745;116746;116747;116748;116749;116750;116751;116752 141584;141585;141586;141587;141588;141589;141590 141590 7 YWPVIPLKF Unmodified 1161.6587 0.65865269 2994 Q9NWZ8 GEMIN8 Gem-associated protein 8 yes yes 0 0 0 1 By MS/MS 6 0 1 1 80.5 80.5 2 0.00021248 26302 20211116_3445_TMUAki_TMT10x_S_F6 97.068 73.996 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22393 2994 20593 116753 141591 141591 1 YWTLTATGGVQSTASSK Unmodified 1756.8632 0.86317875 1859 Q16658 FSCN1 Fascin yes yes 0 0 0 0 By MS/MS By MS/MS 3.2 2.48 2 4 2 2 5 5 59.641 59.462 2;3 7.4458E-125 19413 20211116_3429_TMUAki_TMT10x_P_F2 390.95 372.68 63701000 105880000 967690 119500000 71582000 65901000 73345000 38438000 32605000 41318000 66624000 59312000 98851000 5397400 120140000 68680000 69825000 73043000 40554000 36160000 40235000 63217000 13 13 9 13 13 13 13 13 13 13 13 26451000 42845000 190620 47041000 30768000 37676000 32697000 14341000 11184000 16142000 24240000 24624000 39995000 1705400 47553000 29515000 38435000 32399000 15812000 12782000 15690000 22980000 5 5 2 5 5 5 5 5 5 5 5 37250000 63038000 777060 72456000 40814000 28225000 40648000 24097000 21421000 25177000 42384000 34687000 58857000 3692000 72590000 39166000 31389000 40645000 24741000 23378000 24545000 40237000 8 8 7 8 8 8 8 8 8 8 8 11240000000 6938200000 4301400000 22394 1859 20594 116754;116755;116756;116757;116758;116759;116760;116761;116762;116763 141592;141593;141594;141595;141596;141597;141598;141599;141600;141601;141602;141603;141604 141593 13 YYAFPQMITPLVTKG Oxidation (M) 1743.8906 0.89057948 1708 Q14353 GAMT Guanidinoacetate N-methyltransferase yes yes 0 0 1 1 By MS/MS 3 0 1 1 74.944 74.758 3 0.0037365 27137 20211116_3441_TMUAki_TMT10x_S_F3 63.709 50.942 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22395 1708 20595 116764 141605 141605 2294 1 YYALCGFGGVLSCGLTHTAVVPLDLVK Unmodified 2909.482 0.48195724 1466 Q00325-2 SLC25A3 Phosphate carrier protein, mitochondrial yes yes 0 0 0 0 By MS/MS By MS/MS 4 0 2 1 1 79.881 79.874 4 1.4942E-13 26668 20211116_3431_TMUAki_TMT10x_P_F4 120.52 107.46 3919200 6959700 43507 6006000 4273700 5186900 4181500 3007900 2496100 3325400 4127600 3649500 6490600 236720 6182200 4098100 5285700 4194100 3177700 2671000 3234700 3931200 2 2 1 2 2 2 2 2 2 2 2 1633900 2868700 0 2428000 1509400 2772400 1370500 1164000 1104200 1411300 1582300 1521400 2675100 0 2513300 1443800 2766900 1389200 1272000 1152000 1368200 1511600 1 1 0 1 1 1 1 1 1 1 1 2285300 4091000 43507 3578000 2764200 2414500 2811000 1843900 1391900 1914000 2545300 2128100 3815500 236720 3669000 2654300 2518700 2805000 1905700 1519100 1866500 2419700 1 1 1 1 1 1 1 1 1 1 1 2406900000 1276100000 1130800000 22396 1466 20596 116765;116766 141606;141607 141606 2 YYAVNFPMRDGIDDESYGQIFKPIISK Oxidation (M) 3181.543 0.54303717 2362 Q92769;Q92769-3 HDAC2 Histone deacetylase 2 yes no 0 0 1 2 By MS/MS By MS/MS 4.5 3.14 3 2 2 3 5 5 76.768 76.757 4;5 7.9027E-13 26892 20211116_3439_TMUAki_TMT10x_S_F1 116.24 107.39 127170000 218310000 719030 196740000 121860000 198240000 144400000 114210000 123360000 130190000 145640000 118410000 203620000 10912000 202250000 117440000 199970000 144650000 120840000 127210000 126490000 139800000 13 13 8 13 13 13 13 13 13 13 13 68246000 116970000 406390 107410000 59704000 121540000 66780000 60695000 67891000 71806000 75279000 63545000 109110000 5753400 110470000 57439000 121580000 67402000 65114000 69281000 69671000 72391000 7 7 4 7 7 7 7 7 7 7 7 58921000 101340000 312640 89326000 62156000 76699000 77625000 53517000 55472000 58381000 70357000 54863000 94518000 5158400 91788000 60002000 78394000 77244000 55728000 57930000 56818000 67410000 6 6 4 6 6 6 6 6 6 6 6 20851000000 11520000000 9330600000 22397 2362 20597 116767;116768;116769;116770;116771;116772;116773;116774;116775;116776 141608;141609;141610;141611;141612;141613;141614;141615;141616;141617;141618;141619;141620 141616 2704 13 YYAVNFPMRDGIDDESYGQIFKPIISK Unmodified 3165.5481 0.54812255 2362 Q92769;Q92769-3 HDAC2 Histone deacetylase 2 yes no 0 0 0 2 By MS/MS 2 0 1 1 77.673 77.642 4 1.2183E-08 25532 20211116_3440_TMUAki_TMT10x_S_F2 92.242 83.846 7850500 13336000 185610 15276000 7943200 5681800 9962500 2291200 1559400 2940600 7926500 7310900 12451000 825130 15303000 7678300 6303900 9739700 2520100 2180100 2845200 7449300 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7850500 13336000 185610 15276000 7943200 5681800 9962500 2291200 1559400 2940600 7926500 7310900 12451000 825130 15303000 7678300 6303900 9739700 2520100 2180100 2845200 7449300 1 1 1 1 1 1 1 1 1 1 1 1630400000 0 1630400000 22398 2362 20597 116777 141621 141621 1 YYDSRPGGYGYGYGR Unmodified 1729.7485 0.74848335 1462 P98179 RBM3 RNA-binding protein 3 yes yes 0 0 0 1 By MS/MS By MS/MS 5.86 2.23 1 1 1 2 2 4 3 36.085 36.287 3 1.9329E-33 8803 20211116_3436_TMUAki_TMT10x_P_F8 222.16 201.43 3498600 5984500 38248 8531800 8779200 8242000 4749200 5411000 6212300 4152200 5379300 3257700 5593700 382960 8519600 8317900 8350700 5073300 5606800 6226400 4107100 5215000 16 16 7 16 16 16 16 16 16 16 16 2368000 4073700 38248 6035000 7889500 7430800 3896400 3624600 4237800 2781500 3484700 2205100 3808500 301950 6039000 7466500 7398300 4171600 3852100 4269500 2751300 3384900 11 11 7 11 11 11 11 11 11 11 11 1130600 1910800 0 2496800 889620 811230 852800 1786400 1974600 1370700 1894600 1052600 1785200 81006 2480600 851480 952310 901680 1754600 1956900 1355900 1830100 5 5 0 5 5 5 5 5 5 5 5 657480000 444900000 212580000 22399 1462 20598 116778;116779;116780;116781;116782;116783;116784 141622;141623;141624;141625;141626;141627;141628;141629;141630;141631;141632;141633;141634;141635;141636;141637 141632 16 YYEAADTVTQFDNVR Unmodified 1790.8111 0.81114318 2263 Q8TAQ2;Q8TAQ2-2;Q8TAQ2-3 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 0 0 0 0 By MS/MS By MS/MS 3.6 0.49 2 3 2 3 59.252 59.124 2;3 5.7607E-33 18639 20211116_3442_TMUAki_TMT10x_S_F4 202 173.3 8353100 12960000 113440 13855000 10392000 11685000 9167200 10199000 9654200 8941600 11177000 7778400 12096000 826810 14039000 9940200 12004000 9377800 10407000 9854200 8784600 10735000 3 3 3 3 3 3 3 3 3 3 3 3560600 4889500 47.013 5555100 5234200 6894600 4529500 3976500 3827900 3376300 4542600 3315300 4564900 318680 5640100 5001100 6875500 4609600 4172300 3950300 3322200 4359900 1 1 1 1 1 1 1 1 1 1 1 4792500 8070300 113400 8299700 5157500 4790100 4637700 6222600 5826300 5565300 6634100 4463100 7531300 508120 8398400 4939100 5128500 4768200 6234700 5903900 5462400 6374700 2 2 2 2 2 2 2 2 2 2 2 1302000000 452480000 849490000 22400 2263 20599 116785;116786;116787;116788;116789 141638;141639;141640;141641;141642 141642 5 YYEDLDEVSSTSSVSQSLESEDAR Unmodified 2695.1621 0.16205871 941 P35658;P35658-3;P35658-4;P35658-2;P35658-5 NUP214 Nuclear pore complex protein Nup214 yes no 0 0 0 0 By MS/MS 1 0 1 1 64.778 64.526 3 1.3463E-08 21993 20211116_3439_TMUAki_TMT10x_S_F1 93.407 84.807 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22401 941 20600 116790 141643 141643 1 YYEVLGAAATTDYNNNHEGREEDQR Unmodified 2914.2754 0.27540618 1047 P46379;P46379-2;P46379-3;P46379-4;P46379-5 BAG6 Large proline-rich protein BAG6 yes no 0 0 0 1 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 45.847 45.789 4 1.6715E-48 14210 20211116_3430_TMUAki_TMT10x_P_F3 211.06 199.43 5270700 9042400 26662 9546500 8187100 10258000 5946200 8953900 8444500 6430600 7706000 4907100 8439400 280620 9714000 7790100 10377000 6226000 9093900 8455300 6384400 7456500 8 8 3 8 8 8 8 8 8 8 8 3589600 5964800 21420 6112700 6575100 8663500 4699400 6152200 5636600 4213000 5150600 3341900 5566300 182310 6263600 6254600 8612000 4893900 6323800 5676100 4194500 4983600 5 5 2 5 5 5 5 5 5 5 5 1681100 3077600 5241.6 3433900 1612000 1594300 1246800 2801700 2807900 2217500 2555400 1565200 2873000 98304 3450400 1535500 1764700 1332100 2770200 2779300 2189800 2472900 3 3 1 3 3 3 3 3 3 3 3 2042000000 1260100000 781910000 22402 1047 20601 116791;116792;116793;116794;116795 141644;141645;141646;141647;141648;141649;141650;141651 141645 8 YYFEGIK Unmodified 918.44872 0.4487195 431 O95433 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 yes yes 0 0 0 0 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 57.032 57.474 2 0.0025686 18860 20211116_3446_TMUAki_TMT10x_S_F7 124.37 78.656 47044000 77016000 768420 90146000 66949000 68560000 46934000 69461000 73069000 60009000 68476000 43808000 71913000 4895200 90714000 63737000 71196000 49463000 70294000 73029000 58997000 66199000 5 5 5 5 5 5 5 5 5 5 5 18828000 30102000 103310 33382000 42738000 46662000 26834000 28646000 28438000 23568000 26191000 17531000 28100000 1992100 34022000 40586000 46312000 28100000 29882000 28781000 23227000 25335000 2 2 2 2 2 2 2 2 2 2 2 28216000 46914000 665110 56764000 24211000 21898000 20101000 40815000 44631000 36441000 42285000 26277000 43813000 2903100 56692000 23151000 24884000 21363000 40412000 44248000 35770000 40863000 3 3 3 3 3 3 3 3 3 3 3 1786000000 1378900000 407090000 22403 431 20602 116796;116797;116798;116799;116800 141652;141653;141654;141655;141656;141657;141658 141656 7 YYFSHDTD Unmodified 1046.3981 0.39814049 5 A0AVT1;A0AVT1-2 UBA6 Ubiquitin-like modifier-activating enzyme 6 yes no 0 0 0 0 By MS/MS 3 0 1 1 39.115 39.158 2 0.10175 11593 20211116_3430_TMUAki_TMT10x_P_F3 57.335 54.405 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22404 5 20603 116801 141659 141659 1 YYGGAEVVDEIELLCQR Unmodified 2012.9513 0.95134183 915 P34897;P34897-3;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 0 By MS/MS By MS/MS 1.71 0.7 3 3 1 4 3 78.762 78.736 2;3 5.2533E-51 27718 20211116_3439_TMUAki_TMT10x_S_F1 236.61 201.61 11672000 18728000 149580 19231000 10981000 19374000 14610000 9591200 10911000 13099000 13740000 10869000 17477000 1095200 19585000 10630000 19508000 14515000 10350000 11362000 12648000 13167000 5 5 4 5 5 5 5 5 5 5 5 8853600 14018000 74888 14448000 8218300 15674000 10516000 7547600 8202200 9713400 10399000 8244100 13082000 792720 14727000 7942300 15710000 10475000 8148900 8523500 9397400 9964000 4 4 3 4 4 4 4 4 4 4 4 2818500 4709900 74696 4782900 2763100 3699500 4094000 2043500 2709000 3385100 3340800 2624900 4395100 302510 4858000 2687400 3798400 4040200 2201500 2838900 3250800 3203200 1 1 1 1 1 1 1 1 1 1 1 3669800000 2396400000 1273400000 22405 915 20604 116802;116803;116804;116805;116806;116807;116808 141660;141661;141662;141663;141664;141665;141666 141666 7 YYGGAEVVDEIELLCQRR Unmodified 2169.0525 0.052452861 915 P34897;P34897-3;P34897-2 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 0 0 0 1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 75.141 75.007 3 8.1527E-51 27329 20211116_3441_TMUAki_TMT10x_S_F3 234.57 211.99 9270900 16075000 345130 14265000 11592000 18330000 12256000 11444000 11505000 12602000 12860000 8634700 14993000 1122800 14741000 11152000 18268000 12374000 12018000 11786000 12260000 12364000 3 3 3 3 3 3 3 3 3 3 3 7308400 12023000 232380 10464000 7904400 15108000 9091300 8808800 8686700 9565900 9606000 6806600 11213000 830830 10854000 7623000 14963000 9147100 9296800 8887600 9311400 9238100 2 2 2 2 2 2 2 2 2 2 2 1962500 4051900 112750 3801000 3687300 3222100 3164800 2635000 2818800 3036100 3253900 1828100 3779900 291940 3886700 3529200 3305000 3226800 2720800 2898200 2948700 3125500 1 1 1 1 1 1 1 1 1 1 1 1493200000 792540000 700650000 22406 915 20605 116809;116810;116811 141667;141668;141669 141669 3 YYGGGSEGGR Unmodified 1001.4203 0.42027292 677 P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes yes 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 28.777 28.523 2 4.1131E-06 8533 20211116_3441_TMUAki_TMT10x_S_F3 143.91 134.7 349280 590500 955.21 449130 394960 529340 453410 299010 400390 353130 383460 325220 550470 29310 469380 380150 529130 455220 317250 409040 342650 370430 2 2 1 2 2 2 2 2 2 2 2 172120 297180 955.21 226820 195710 330220 226060 156330 214080 189980 204480 160270 277040 15491 237910 188470 326120 227340 168730 217970 184150 197560 1 1 1 1 1 1 1 1 1 1 1 177160 293320 0 222320 199250 199120 227350 142670 186310 163150 178970 164950 273430 13819 231470 191680 203010 227870 148520 191070 158500 172880 1 1 0 1 1 1 1 1 1 1 1 13772000 3480500 10291000 22407 677 20606 116812;116813 141670;141671 141671 2 YYGLQILENVIK Unmodified 1451.8024 0.8024164 153 O14980 XPO1 Exportin-1 yes yes 0 0 0 0 By MS/MS By MS/MS 4.14 3.09 4 4 2 4 7 7 80.006 80.003 2;3 9.3054E-26 26294 20211116_3428_TMUAki_TMT10x_P_F1 257.4 207.99 51583000 87053000 252210 80578000 62996000 88629000 68261000 54482000 53631000 58566000 65209000 48029000 81205000 4518700 82780000 60541000 89026000 68512000 57239000 55611000 57031000 62547000 11 11 7 11 11 11 11 11 11 11 11 33442000 54598000 63157 51202000 37423000 67816000 43015000 36084000 35684000 38554000 41498000 31138000 50933000 2822700 52723000 36023000 67349000 43112000 38363000 36829000 37552000 39852000 6 6 4 6 6 6 6 6 6 6 6 18141000 32454000 189050 29376000 25573000 20813000 25247000 18398000 17947000 20012000 23711000 16891000 30272000 1696000 30057000 24518000 21677000 25400000 18876000 18782000 19479000 22695000 5 5 3 5 5 5 5 5 5 5 5 9176900000 5569800000 3607100000 22408 153 20607 116814;116815;116816;116817;116818;116819;116820;116821;116822;116823;116824;116825;116826;116827 141672;141673;141674;141675;141676;141677;141678;141679;141680;141681;141682;141683;141684 141672 13 YYITIIDAPGHR Unmodified 1417.7354 0.73539946 1520 Q05639 EEF1A2 Elongation factor 1-alpha 2 yes yes 0 0 0 0 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 52.69 53.061 3 4.3402E-09 16517 20211116_3435_TMUAki_TMT10x_P_F7 145.55 118.96 7130300 11830000 0 13240000 8590900 8530600 7191700 8471800 8171900 7422200 8747700 6638600 11044000 563100 13337000 8199000 8979600 7398400 8585100 8291000 7292100 8420700 3 3 0 3 3 3 3 3 3 3 3 2039400 3214600 0 3871300 3862400 4581200 2658600 2191200 2139700 2087700 2348700 1898700 3002000 174990 3913600 3671900 4569600 2743600 2345400 2206900 2043200 2259300 1 1 0 1 1 1 1 1 1 1 1 5090900 8615700 0 9368600 4728500 3949400 4533100 6280600 6032100 5334500 6399000 4739900 8042200 388120 9423300 4527100 4410000 4654800 6239700 6084100 5249000 6161500 2 2 0 2 2 2 2 2 2 2 2 2087700000 536690000 1551000000 22409 1520 20608 116828;116829;116830 141685;141686;141687 141685 3 YYITIIDAPGHRDFIK Unmodified 1921.0098 0.0097834104 1520 Q05639 EEF1A2 Elongation factor 1-alpha 2 yes yes 0 0 0 1 By MS/MS By MS/MS 4.5 3.5 2 2 2 2 60.173 60.148 4 5.535E-15 18162 20211116_3436_TMUAki_TMT10x_P_F8 148.57 115.26 55866000 89743000 341370 107510000 79644000 85537000 64957000 63308000 57804000 61248000 74381000 52016000 83806000 4965000 108100000 75997000 87996000 66435000 65427000 59707000 59903000 71239000 9 9 5 9 9 9 9 9 9 9 9 30635000 46966000 213920 56292000 45969000 60739000 36803000 33557000 31514000 33109000 38865000 28525000 43859000 2838100 56835000 43852000 60992000 37647000 35477000 32552000 32354000 37264000 5 5 3 5 5 5 5 5 5 5 5 25230000 42777000 127440 51221000 33675000 24798000 28154000 29751000 26290000 28139000 35515000 23491000 39947000 2126900 51262000 32145000 27004000 28788000 29950000 27155000 27549000 33975000 4 4 2 4 4 4 4 4 4 4 4 4317200000 2323500000 1993700000 22410 1520 20609 116831;116832;116833;116834 141688;141689;141690;141691;141692;141693;141694;141695;141696 141691 9 YYLCGFCPAELFTNTR Unmodified 2010.8968 0.89680384 414 O95232;O95232-2 LUC7L3 Luc7-like protein 3 yes no 0 0 0 0 By MS/MS By MS/MS 2.5 0.5 4 4 4 4 79.339 79.291 2;3 2.8179E-52 27946 20211116_3430_TMUAki_TMT10x_P_F3 263.57 241.9 33917000 56167000 37318 52532000 42498000 47125000 40919000 30033000 22119000 33482000 38363000 31577000 52396000 2474300 53767000 40679000 47957000 41006000 31501000 23902000 32558000 36505000 7 7 2 7 7 7 7 7 7 7 7 15908000 25421000 0 23482000 15717000 28052000 17422000 14725000 11064000 15772000 17828000 14810000 23713000 1098200 24161000 15099000 27996000 17386000 15675000 11774000 15361000 16989000 4 4 0 4 4 4 4 4 4 4 4 18010000 30746000 37318 29050000 26781000 19073000 23497000 15308000 11055000 17710000 20535000 16767000 28683000 1376100 29607000 25580000 19961000 23620000 15826000 12127000 17198000 19516000 3 3 2 3 3 3 3 3 3 3 3 13897000000 5725000000 8172300000 22411 414 20610 116835;116836;116837;116838;116839;116840;116841;116842 141697;141698;141699;141700;141701;141702;141703;141704 141700 8 YYPTEDVPR Unmodified 1138.5295 0.52948901 1499 Q02878 RPL6 60S ribosomal protein L6 yes yes 0 0 0 0 By MS/MS By MS/MS 3.42 1.8 2 2 3 2 1 1 1 5 7 40.187 40.178 2;3 2.205E-15 10252 20211116_3440_TMUAki_TMT10x_S_F2 240.48 212.31 15074000 23067000 188770 30195000 29689000 25302000 16259000 21948000 25619000 17159000 23148000 14036000 21551000 1568900 30227000 28137000 26002000 17484000 22341000 25566000 16956000 22407000 13 13 7 13 13 13 13 13 13 13 13 7095900 10547000 96704 13309000 23091000 19491000 9761700 9616900 11973000 7707700 9909500 6607600 9852100 885220 13475000 21810000 19253000 10667000 10219000 12011000 7606400 9623200 6 6 3 6 6 6 6 6 6 6 6 7977600 12520000 92065 16885000 6597800 5811000 6497100 12331000 13646000 9451500 13239000 7428300 11699000 683690 16752000 6326400 6749500 6816900 12122000 13555000 9349500 12783000 7 7 4 7 7 7 7 7 7 7 7 3546600000 1524800000 2021800000 22412 1499 20611 116843;116844;116845;116846;116847;116848;116849;116850;116851;116852;116853;116854 141705;141706;141707;141708;141709;141710;141711;141712;141713;141714;141715;141716;141717;141718;141719 141713 15 YYPTEDVPRK Unmodified 1266.6245 0.62445203 1499 Q02878 RPL6 60S ribosomal protein L6 yes yes 0 0 0 1 By MS/MS By MS/MS 5.5 0.5 2 2 3 1 37.998 38.048 3 3.3924E-09 8946 20211116_3444_TMUAki_TMT10x_S_F5 177.78 154.46 12229000 19044000 133020 26223000 21890000 14282000 13674000 12166000 16259000 10803000 17627000 11388000 17796000 1268600 26066000 20790000 15239000 14379000 12436000 16477000 10607000 16962000 6 6 5 6 6 6 6 6 6 6 6 4484600 7512000 64314 9760800 14834000 8673000 5697100 4602600 6131800 4121600 6441600 4176100 7017900 576690 9782500 13998000 8811100 6270000 4870600 6230000 4045100 6204400 3 3 3 3 3 3 3 3 3 3 3 7744800 11532000 68710 16463000 7055900 5609300 7976600 7563700 10128000 6681500 11186000 7211600 10779000 691920 16284000 6792500 6427700 8109400 7565200 10247000 6561800 10758000 3 3 2 3 3 3 3 3 3 3 3 1152400000 769440000 382950000 22413 1499 20612 116855;116856;116857;116858 141720;141721;141722;141723;141724;141725;141726 141726 7 YYREVLPGEIVEISR Unmodified 1821.9625 0.96249887 1524 Q06203 PPAT Amidophosphoribosyltransferase yes yes 0 0 0 1 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 58.571 58.637 3 3.42E-19 17924 20211116_3431_TMUAki_TMT10x_P_F4 162.26 143.92 8275200 12839000 27842 13922000 10111000 15181000 10232000 10520000 9580200 9069000 10954000 7705000 11984000 704880 14145000 9697600 15283000 10352000 10888000 9823400 8917000 10524000 3 3 1 3 3 3 3 3 3 3 3 6482600 9648400 27842 10346000 7800000 13187000 8231700 7708800 6915300 6422700 8086000 6036000 9005600 565550 10547000 7490500 13135000 8286400 8075700 7134300 6325700 7764100 2 2 1 2 2 2 2 2 2 2 2 1792600 3190100 0 3576200 2311200 1994300 1999900 2811400 2664900 2646300 2867700 1669000 2978200 139330 3597300 2207200 2147600 2065400 2812300 2689200 2591300 2760100 1 1 0 1 1 1 1 1 1 1 1 2115500000 1065600000 1049900000 22414 1524 20613 116859;116860;116861;116862;116863 141727;141728;141729;141730 141727 4 YYSEEAEVDLRDPGRDYELYK Unmodified 2609.1922 0.19217704 1661 Q13769 THOC5 THO complex subunit 5 homolog yes yes 0 0 0 2 By MS/MS By matching 2.5 0.5 1 1 1 1 58.992 58.658 4 1.1772E-07 19115 20211116_3429_TMUAki_TMT10x_P_F2 98.816 83.394 11319000 18499000 457080 17932000 14484000 27545000 15656000 15218000 15903000 14410000 13546000 10542000 17260000 1408700 18477000 13945000 27191000 15827000 16071000 16085000 14107000 13141000 2 2 2 2 2 2 2 2 2 2 2 11319000 18499000 457080 17932000 14484000 27545000 15656000 15218000 15903000 14410000 13546000 10542000 17260000 1408700 18477000 13945000 27191000 15827000 16071000 16085000 14107000 13141000 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 813220000 526790000 286430000 22415 1661 20614 116864;116865 141731;141732 141731 2 YYSFFDLNPK Unmodified 1292.6077 0.60773933 2406 Q96AC1;Q96AC1-2;Q96AC1-3;Q9BQL6;Q9BQL6-4;Q9BQL6-2 FERMT2;FERMT1 Fermitin family homolog 2;Fermitin family homolog 1 yes no 0 0 0 0 By MS/MS By MS/MS 1 0 2 1 1 76.822 76.79 3 0.021407 24928 20211116_3428_TMUAki_TMT10x_P_F1 60.434 45.232 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22416 2406 20615 116866;116867 141733;141734 141733 2 YYTEFPTVLDITAEDPSK Unmodified 2087.9939 0.99391815 142 O14929;O14929-2 HAT1 Histone acetyltransferase type B catalytic subunit yes no 0 0 0 0 By MS/MS 3 0 1 1 78.95 78.88 3 0.048471 28774 20211116_3441_TMUAki_TMT10x_S_F3 39.849 22.969 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22417 142 20616 116868 141735 141735 1 YYTLFGR Unmodified 918.45995 0.45995289 542 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 0 0 0 0 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 57.393 57.171 2 0.0013766 20079 20211116_3441_TMUAki_TMT10x_S_F3 138.25 117.38 11374000 17885000 396790 18522000 18871000 25159000 14855000 19979000 18908000 17459000 17190000 10593000 16691000 1363500 18950000 18014000 25105000 15403000 20499000 18997000 17155000 16636000 3 3 2 3 3 3 3 3 3 3 3 7034400 10716000 196200 11106000 13749000 20392000 10188000 12377000 11280000 10949000 10721000 6550700 10001000 805760 11441000 13102000 20021000 10554000 12946000 11407000 10752000 10360000 2 2 1 2 2 2 2 2 2 2 2 4340100 7168700 200590 7416000 5122500 4767100 4667000 7601700 7628400 6509800 6468700 4042500 6690100 557730 7508400 4912400 5083500 4849400 7553100 7589900 6402800 6276000 1 1 1 1 1 1 1 1 1 1 1 1042600000 845490000 197150000 22418 542 20617 116869;116870;116871;116872;116873 141736;141737;141738;141739 141739 4 YYTSASGDEMVSLK Unmodified 1549.697 0.69702463 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 0 0 By MS/MS By MS/MS 4.92 0.954 1 3 4 4 6 6 56.508 56.576 2;3 8.1792E-72 16164 20211116_3444_TMUAki_TMT10x_S_F5 326.24 281.93 70132000 101320000 702610 141740000 104820000 89997000 77154000 47139000 40150000 48674000 79742000 65302000 94690000 6623300 140970000 99831000 93911000 78562000 50137000 43870000 47474000 75698000 17 17 11 17 17 17 17 17 17 17 17 39908000 58324000 452780 77953000 81668000 74399000 57725000 29857000 26208000 30816000 45957000 37161000 54496000 4241600 78085000 77727000 75011000 58829000 32633000 28742000 30057000 43722000 10 10 7 10 10 10 10 10 10 10 10 30223000 42993000 249840 63785000 23151000 15598000 19430000 17282000 13942000 17858000 33785000 28140000 40194000 2381700 62882000 22103000 18900000 19733000 17504000 15128000 17418000 31977000 7 7 4 7 7 7 7 7 7 7 7 6033300000 2869700000 3163600000 22419 544 20618 116874;116875;116876;116877;116878;116879;116880;116881;116882;116883;116884;116885 141740;141741;141742;141743;141744;141745;141746;141747;141748;141749;141750;141751;141752;141753;141754;141755;141756;141757 141754 18 YYTSASGDEMVSLK Oxidation (M) 1565.6919 0.69193925 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 1 0 By MS/MS By MS/MS 4.5 0.957 2 4 4 2 5 7 48.655 48.818 2;3 1.2153E-18 14307 20211116_3442_TMUAki_TMT10x_S_F4 169.93 153.26 49457000 73807000 317350 98095000 95603000 85412000 54377000 63239000 69655000 54339000 71654000 46050000 68960000 4765700 98168000 90634000 87296000 57786000 65149000 70264000 53437000 69060000 15 15 8 15 15 15 15 15 15 15 15 25004000 35889000 48199 47863000 72087000 64931000 33520000 30408000 34653000 26019000 34625000 23280000 33533000 2595800 48237000 68142000 64319000 36052000 32527000 35203000 25592000 33402000 7 7 2 7 7 7 7 7 7 7 7 24453000 37918000 269150 50233000 23516000 20480000 20857000 32831000 35002000 28321000 37029000 22770000 35428000 2169900 49931000 22492000 22977000 21733000 32622000 35061000 27845000 35658000 8 8 6 8 8 8 8 8 8 8 8 6144400000 3350700000 2793700000 22420 544 20618 116886;116887;116888;116889;116890;116891;116892;116893;116894;116895;116896;116897 141758;141759;141760;141761;141762;141763;141764;141765;141766;141767;141768;141769;141770;141771;141772;141773;141774;141775;141776 141770 490 19 YYTSASGDEMVSLKDYCTR Oxidation (M) 2260.9616 0.96164852 544 P07900;P07900-2 HSP90AA1 Heat shock protein HSP 90-alpha yes no 0 0 1 1 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 48.04 48.164 3 1.9041E-12 13089 20211116_3445_TMUAki_TMT10x_S_F6 134.34 128.5 203570 414990 0 417660 347770 547700 249790 2928200 1204300 1656900 979560 189540 387240 18248 427840 330950 603440 288040 2819000 1175400 1670600 951900 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 203570 414990 0 417660 347770 547700 249790 2928200 1204300 1656900 979560 189540 387240 18248 427840 330950 603440 288040 2819000 1175400 1670600 951900 1 1 0 1 1 1 1 1 1 1 1 340470000 241490000 98981000 22421 544 20619 116898;116899;116900 141777;141778 141778 490 2 YYTVFDRDNNR Unmodified 1461.6637 0.66369108 536 P07339 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes yes 0 0 0 1 By MS/MS By MS/MS 5.5 1.12 2 2 2 2 4 4 39.391 39.602 3 3.6615E-15 9311 20211116_3434_TMUAki_TMT10x_P_F6 196.24 163.67 7449100 11803000 21707 15155000 15092000 13317000 8776300 10492000 10550000 8872900 11396000 6935900 11026000 728540 15197000 14312000 13617000 9287300 10762000 10685000 8732500 10967000 7 7 3 7 7 7 7 7 7 7 7 4050900 6229300 0 8086400 12169000 10728000 6246500 6052800 5929500 4828500 6390400 3771700 5819600 436700 8157800 11519000 10661000 6635900 6353400 6062500 4766200 6150300 3 3 0 3 3 3 3 3 3 3 3 3398100 5573200 21707 7069000 2923000 2589200 2529800 4439100 4620500 4044400 5005700 3164100 5206000 291840 7038900 2793900 2955600 2651300 4408200 4622700 3966200 4816900 4 4 3 4 4 4 4 4 4 4 4 807490000 510430000 297070000 22422 536 20620 116901;116902;116903;116904;116905;116906;116907;116908 141779;141780;141781;141782;141783;141784;141785 141780 7 YYVTIIDAPGHR Unmodified 1403.7197 0.7197494 1416 P68104;Q5VTE0 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 0 0 0 0 By MS/MS By MS/MS 5.11 2.15 2 1 2 1 3 4 4 2 10 9 48.545 48.712 2;3 7.6981E-39 14788 20211116_3435_TMUAki_TMT10x_P_F7 290.87 231.96 70577000 119940000 474910 151110000 116540000 117060000 83272000 67784000 73259000 71462000 91911000 65714000 112040000 5001900 151450000 110900000 120250000 85895000 71515000 75629000 69642000 88086000 25 25 11 25 25 25 25 25 25 25 25 41187000 72621000 324050 93094000 91548000 95032000 57113000 39263000 42228000 42680000 55601000 38350000 67839000 3382800 93554000 86914000 95439000 59272000 42837000 44085000 41543000 53222000 14 14 6 14 14 14 14 14 14 14 14 29389000 47322000 150860 58019000 24989000 22031000 26159000 28521000 31031000 28782000 36311000 27364000 44197000 1619000 57896000 23990000 24809000 26624000 28678000 31543000 28099000 34864000 11 11 5 11 11 11 11 11 11 11 11 47905000000 26298000000 21606000000 22423 1416 20621 116909;116910;116911;116912;116913;116914;116915;116916;116917;116918;116919;116920;116921;116922;116923;116924;116925;116926;116927 141786;141787;141788;141789;141790;141791;141792;141793;141794;141795;141796;141797;141798;141799;141800;141801;141802;141803;141804;141805;141806;141807;141808;141809;141810;141811;141812 141797 27 YYVTIIDAPGHRDFIK Unmodified 1906.9941 0.99413335 1416 P68104;Q5VTE0 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 0 0 0 1 By MS/MS By MS/MS 5.28 2.72 4 2 1 2 4 5 10 8 56.953 57.063 2;3;4 5.6616E-58 16936 20211116_3436_TMUAki_TMT10x_P_F8 281.25 238.85 185100000 310430000 2364200 415220000 288290000 336860000 211940000 205290000 189470000 193510000 237690000 172350000 290060000 17731000 415020000 274570000 345050000 218280000 215010000 195440000 189480000 227800000 26 26 16 26 26 26 26 26 26 26 26 122650000 206100000 1622000 281860000 216120000 292620000 159850000 135100000 123890000 128420000 154360000 114210000 192600000 12024000 282350000 205840000 293900000 163980000 145110000 128690000 125700000 147960000 14 14 9 14 14 14 14 14 14 14 14 62446000 104330000 742190 133360000 72172000 44246000 52085000 70181000 65579000 65091000 83334000 58147000 97464000 5706800 132670000 68722000 51154000 54300000 69894000 66755000 63781000 79839000 12 12 7 12 12 12 12 12 12 12 12 79858000000 48768000000 31090000000 22424 1416 20622 116928;116929;116930;116931;116932;116933;116934;116935;116936;116937;116938;116939;116940;116941;116942;116943;116944;116945 141813;141814;141815;141816;141817;141818;141819;141820;141821;141822;141823;141824;141825;141826;141827;141828;141829;141830;141831;141832;141833;141834;141835;141836 141824 24